7281 139 40 6 chr9 8 1318 -142270126 - L1PBa LINE L1 -4276 2587 1087 2348 158 22 9 chr9 1490 1939 -142269505 + L1MB1 LINE L1 5714 6168 0 1221 140 10 24 chr9 1951 2158 -142269286 - Tigger3(Golem) DNA MER2_type -24 3005 2802 321 153 333 0 chr9 2156 2228 -142269216 - Tigger3(Golem) DNA MER2_type -2932 97 2 * 1839 175 0 7 chr9 2543 2834 -142268610 - AluJb SINE Alu -23 289 1 359 294 73 0 chr9 4174 4283 -142267161 + L1ME3 LINE L1 5965 6081 -81 2006 105 28 65 chr9 4342 4665 -142266779 + AluSx SINE Alu 1 311 -1 970 221 114 76 chr9 4780 5282 -142266162 + MER39 LTR ERV1 1 707 0 190 227 0 23 chr9 5387 5431 -142266013 - MER5A DNA MER1_type -21 168 126 369 250 30 54 chr9 5573 5741 -142265703 + L1MC5 LINE L1 7773 7936 -25 192 270 139 70 chr9 5741 5856 -142265588 - MER5B DNA MER1_type -53 125 3 189 311 115 0 chr9 5861 5922 -142265522 - L2 LINE L2 -1 3271 3204 1624 163 20 24 chr9 8858 9152 -142262292 + AluJo SINE Alu 2 294 -18 1671 195 7 3 chr9 9180 9487 -142261957 + AluJb SINE Alu 1 308 -4 194 222 143 0 chr9 10367 10430 -142261014 + MIR SINE MIR 78 149 -113 188 67 33 0 chr9 10478 10508 -142260936 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1833 168 10 16 chr9 10717 11027 -142260417 + AluJo SINE Alu 1 308 -4 2702 146 17 2 chr9 11171 11638 -142259806 + L1MB1 LINE L1 5695 6168 0 42789 31 21 6 chr9 11749 17813 -142253631 + L1PA3 LINE L1 1 6155 0 25 0 0 0 chr9 17831 17856 -142253588 + AT_rich Low_complexity Low_complexity 1 25 0 2259 85 10 19 chr9 18994 19301 -142252143 + AluSc SINE Alu 1 304 -5 1679 126 72 4 chr9 19865 20128 -142251316 + AluSx SINE Alu 5 285 -27 257 27 54 0 chr9 20150 20187 -142251257 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr9 20679 20704 -142250740 + (A)n Simple_repeat Simple_repeat 1 25 0 185 331 145 8 chr9 21311 21435 -142250009 + L2 LINE L2 2718 2858 -456 222 297 55 78 chr9 21501 21629 -142249815 + L2 LINE L2 2948 3072 -200 193 270 206 40 chr9 21716 21842 -142249602 + L2 LINE L2 3122 3268 -4 2620 55 0 0 chr9 22217 22526 -142248918 - AluY SINE Alu -2 309 1 225 0 0 0 chr9 23538 23563 -142247881 + (A)n Simple_repeat Simple_repeat 1 25 0 587 246 181 0 chr9 25495 25710 -142245734 - MIR SINE MIR 0 262 9 21 0 0 0 chr9 26380 26401 -142245043 + AT_rich Low_complexity Low_complexity 1 21 0 801 175 0 0 chr9 27406 27532 -142243912 + FLAM_A SINE Alu 1 126 -7 1751 78 48 117 chr9 27922 28231 -142243213 + AluSx SINE Alu 1 288 -24 38 22 0 0 chr9 28231 28276 -142243168 + AT_rich Low_complexity Low_complexity 1 45 0 290 164 91 0 chr9 30281 30336 -142241108 + L2 LINE L2 3250 3309 -4 27 0 0 0 chr9 31200 31227 -142240217 + AT_rich Low_complexity Low_complexity 1 27 0 1377 113 120 21 chr9 31390 31673 -142239771 + L1MA9 LINE L1 5997 6307 -5 202 151 0 75 chr9 31762 31815 -142239629 + GA-rich Low_complexity Low_complexity 4 52 0 2355 96 3 0 chr9 33287 33588 -142237856 + AluSx SINE Alu 1 302 -10 259 86 0 0 chr9 33899 33934 -142237510 - U2 snRNA snRNA -153 35 1 809 56 47 0 chr9 34007 34114 -142237330 - L1PA10 LINE L1 -3 6165 6054 31 44 0 0 chr9 34799 34844 -142236600 + AT_rich Low_complexity Low_complexity 1 45 0 2203 115 0 28 chr9 35735 36056 -142235388 + AluSx SINE Alu 1 312 0 1233 168 28 5 chr9 37625 37839 -142233605 + MER20 DNA MER1_type 1 219 0 214 158 0 0 chr9 37873 37911 -142233533 + A-rich Low_complexity Low_complexity 5 42 0 742 251 143 72 chr9 38940 39465 -142231979 + HAL1b LINE L1 77 638 -710 * 745 234 104 57 chr9 39464 39780 -142231664 + HAL1b LINE L1 439 769 -579 12781 95 39 8 chr9 39783 40342 -142231102 + Tigger1 DNA MER2_type 388 928 -1490 2052 103 4 4 chr9 40342 40652 -142230792 - AluSg SINE Alu 0 310 1 12781 95 39 8 chr9 40652 41955 -142229489 + Tigger1 DNA MER2_type 928 2309 -109 1028 134 79 12 chr9 41955 42119 -142229325 - FRAM SINE Alu -4 172 1 691 183 0 0 chr9 42123 42238 -142229206 + Tigger1 DNA MER2_type 2304 2418 0 705 167 30 8 chr9 42242 42374 -142229070 - MER5A DNA MER1_type -23 166 32 456 123 0 0 chr9 42436 42509 -142228935 + (TG)n Simple_repeat Simple_repeat 2 74 0 1929 120 4 4 chr9 42511 42786 -142228658 - AluSx SINE Alu -37 275 1 1451 145 9 0 chr9 43638 43866 -142227578 - MER2 DNA MER2_type -115 230 1 299 189 68 14 chr9 44889 44963 -142226481 - L2 LINE L2 -4 3309 3232 2009 82 0 0 chr9 46006 46262 -142225182 + AluY SINE Alu 41 296 -15 2253 107 0 3 chr9 47198 47506 -142223938 + AluSc SINE Alu 2 308 -1 26 64 0 0 chr9 47886 47933 -142223511 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 48072 48093 -142223351 + AT_rich Low_complexity Low_complexity 1 21 0 328 183 112 52 chr9 48454 48624 -142222820 - L1ME LINE L1 -356 5806 5638 233 288 137 0 chr9 48987 49060 -142222384 - L2 LINE L2 -32 3281 3199 390 306 133 43 chr9 49280 49535 -142221909 - L2 LINE L2 -475 2839 2562 212 325 12 12 chr9 50570 50650 -142220794 - MIR SINE MIR -58 150 71 968 272 99 10 chr9 52069 52502 -142218942 - L1ME3A LINE L1 -337 5833 5357 191 106 21 106 chr9 52534 52581 -142218863 - MIR SINE MIR -136 126 84 1261 171 0 18 chr9 53230 53447 -142217997 - AluJo SINE Alu -18 294 82 2187 158 53 44 chr9 53562 54017 -142217427 + L1MB8 LINE L1 5715 6173 -5 2239 117 3 0 chr9 54276 54583 -142216861 - AluSg SINE Alu -2 308 1 733 274 58 14 chr9 54808 55016 -142216428 - MIR SINE MIR -31 231 15 603 189 25 16 chr9 55019 55141 -142216303 - MER58 DNA MER1_type -4 2416 2294 857 196 111 69 chr9 55162 55429 -142216015 + LTR54B LTR ERV1 1 288 -210 1889 143 4 0 chr9 55429 55695 -142215749 + AluSx SINE Alu 1 267 -45 857 196 111 69 chr9 55695 55789 -142215655 + LTR54B LTR ERV1 288 377 -121 453 164 0 133 chr9 55789 55917 -142215527 + MER57A-int LTR ERV1 7425 7535 -2 1020 153 55 92 chr9 55918 56229 -142215215 + MER57A LTR ERV1 1 403 0 400 213 71 50 chr9 56229 56333 -142215111 - MER58 DNA MER1_type -197 144 38 24 0 0 0 chr9 57014 57038 -142214406 + AT_rich Low_complexity Low_complexity 1 24 0 834 206 28 22 chr9 57905 58085 -142213359 - MLT1A1 LTR MaLR 0 365 185 1699 188 0 0 chr9 58224 58506 -142212938 + AluJo SINE Alu 1 282 -30 287 161 0 16 chr9 58514 58576 -142212868 + (TA)n Simple_repeat Simple_repeat 1 61 0 233 238 7 119 chr9 58944 59042 -142212402 - L1MC/D LINE L1 -1895 5913 5836 2273 119 0 0 chr9 59042 59345 -142212099 - AluSq SINE Alu -10 303 1 233 238 7 119 chr9 59345 59397 -142212047 - L1MC/D LINE L1 -1972 5836 5780 22 35 0 0 chr9 59624 59653 -142211791 + AT_rich Low_complexity Low_complexity 1 29 0 2035 153 3 3 chr9 59938 60246 -142211198 + AluSx SINE Alu 1 308 -4 2173 108 142 16 chr9 60562 60885 -142210559 - THE1B LTR MaLR 0 364 1 11972 90 25 15 chr9 60885 62449 -142208995 - THE1B-int LTR MaLR 0 1580 1 2374 114 76 15 chr9 62449 62792 -142208652 - THE1B LTR MaLR 0 364 1 253 253 0 36 chr9 63025 63108 -142208336 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr9 63252 63278 -142208166 + AT_rich Low_complexity Low_complexity 1 26 0 410 253 110 38 chr9 63278 63515 -142207929 + L1ME LINE L1 5546 5799 -322 2644 200 80 11 chr9 64487 65123 -142206321 - L1MC4a LINE L1 -3 7805 7126 616 298 91 5 chr9 65138 65336 -142206108 - L1ME1 LINE L1 -5 6161 5947 186 121 35 35 chr9 65717 65775 -142205669 + T-rich Low_complexity Low_complexity 4 61 0 438 252 67 118 chr9 65924 66162 -142205282 + MER102a DNA MER1_type 96 321 -9 235 170 19 0 chr9 66164 66217 -142205227 + (TA)n Simple_repeat Simple_repeat 1 54 0 1697 243 62 51 chr9 66514 67122 -142204322 - HAL1 LINE L1 -296 2211 1597 317 270 26 12 chr9 67129 67232 -142204212 - MLT1I LTR MaLR -5 445 324 2301 106 0 0 chr9 67525 67828 -142203616 - AluSg SINE Alu -7 303 1 1015 91 8 0 chr9 67828 67960 -142203484 - AluSg SINE Alu -177 133 1 3482 262 68 63 chr9 67960 68120 -142203324 - HAL1 LINE L1 -935 1572 1414 2151 165 12 54 chr9 68120 68525 -142202919 + MLT1B LTR MaLR 3 390 0 3482 262 68 63 chr9 68525 69011 -142202433 - HAL1 LINE L1 -1093 1414 932 4926 106 26 16 chr9 69011 69064 -142202380 - L1MA3 LINE L1 -1 6304 6253 2405 74 7 0 chr9 69064 69362 -142202082 - AluSp SINE Alu -12 301 2 4926 106 26 16 chr9 69362 70051 -142201393 - L1MA3 LINE L1 -52 6253 5555 3482 262 68 63 chr9 70051 70966 -142200478 - HAL1 LINE L1 -1575 932 1 610 254 17 86 chr9 71328 71420 -142200024 - MIR SINE MIR -12 250 153 2299 84 0 0 chr9 71420 71724 -142199720 + AluSx SINE Alu 1 304 0 610 254 17 86 chr9 71724 71862 -142199582 - MIR SINE MIR -109 153 35 2964 6 0 0 chr9 72232 72549 -142198895 + AluYb8 SINE Alu 1 317 -1 548 259 41 14 chr9 72549 72696 -142198748 + L2 LINE L2 3122 3272 0 2387 187 24 2 chr9 72725 73142 -142198302 + MSTB LTR MaLR 1 426 0 2389 68 122 12 chr9 73150 73486 -142197958 - THE1C LTR MaLR -2 373 1 1097 230 149 9 chr9 74295 74617 -142196827 + L1ME3A LINE L1 5781 6147 -23 1775 151 3 40 chr9 75862 76186 -142195258 - AluJb SINE Alu 0 312 1 270 311 150 36 chr9 76552 76719 -142194725 + MER5A DNA MER1_type 4 189 0 2710 39 0 3 chr9 77333 77645 -142193799 + AluY SINE Alu 1 311 0 25 0 0 0 chr9 77936 77961 -142193483 + AT_rich Low_complexity Low_complexity 1 25 0 421 170 0 85 chr9 78024 78118 -142193326 - L1MC4 LINE L1 -159 7883 7798 2508 189 9 5 chr9 78130 78563 -142192881 - MER41D LTR ERV1 -7 550 116 24 32 0 0 chr9 78662 78693 -142192751 + AT_rich Low_complexity Low_complexity 1 31 0 711 274 112 70 chr9 78757 79231 -142192213 + MLT1L LTR MaLR 122 615 0 648 281 87 5 chr9 79271 79467 -142191977 - MIR SINE MIR -49 213 2 712 292 72 8 chr9 79671 79907 -142191537 + MIR SINE MIR 2 252 -10 622 301 104 20 chr9 79915 80214 -142191230 - MLT1K LTR MaLR -150 438 115 266 288 104 40 chr9 81763 81888 -142189556 + L2 LINE L2 3180 3312 -1 25 31 0 0 chr9 82050 82082 -142189362 + AT_rich Low_complexity Low_complexity 1 32 0 2403 80 3 0 chr9 82115 82416 -142189028 - AluSp SINE Alu -11 302 1 896 223 129 41 chr9 82777 83095 -142188349 - L2 LINE L2 0 3313 2968 259 315 83 19 chr9 83827 83935 -142187509 - MIR SINE MIR -64 144 30 517 244 93 52 chr9 84135 84307 -142187137 + MIR SINE MIR 63 241 -21 1286 181 49 61 chr9 85476 85802 -142185642 - MER33 DNA MER1_type -2 322 1 2345 51 10 3 chr9 85832 86126 -142185318 - AluSc SINE Alu -13 296 1 1714 153 32 23 chr9 88348 88656 -142182788 + AluJo SINE Alu 1 311 -1 587 283 34 34 chr9 88961 89166 -142182278 + MIR SINE MIR 2 206 -56 542 207 18 0 chr9 89166 89277 -142182167 + Charlie5 DNA MER1_type 2364 2476 -136 479 257 102 58 chr9 89795 90021 -142181423 - MIR SINE MIR -9 253 18 925 261 56 8 chr9 90917 91166 -142180278 - MIR SINE MIR 0 262 2 259 289 48 0 chr9 91189 91272 -142180172 - MIR SINE MIR 0 262 176 2187 126 3 3 chr9 91288 91598 -142179846 + AluSx SINE Alu 1 310 -2 1989 157 0 0 chr9 91715 92014 -142179430 + AluJo SINE Alu 1 299 -13 1784 79 9 0 chr9 92811 93040 -142178404 - AluSg/x SINE Alu 0 312 82 1520 100 27 9 chr9 93410 93630 -142177814 - MER2 DNA MER2_type 0 345 122 2220 97 0 39 chr9 93630 93938 -142177506 + AluSx SINE Alu 1 296 -16 610 286 43 78 chr9 93979 94072 -142177372 - L1ME LINE L1 -298 5823 5728 1768 158 0 29 chr9 94072 94382 -142177062 + AluJo SINE Alu 1 301 -11 610 286 43 78 chr9 94382 94662 -142176782 - L1ME LINE L1 -393 5728 5463 205 355 56 19 chr9 95407 95514 -142175930 - L2 LINE L2 0 3272 3162 264 278 70 35 chr9 95585 95700 -142175744 - MARNA DNA Mariner -91 495 377 384 321 62 33 chr9 96085 96325 -142175119 - MARNA DNA Mariner -321 265 19 1253 280 159 25 chr9 97665 98146 -142173298 - L2 LINE L2 0 3313 2898 2616 100 43 6 chr9 98146 98497 -142172947 - THE1B LTR MaLR 0 364 1 1253 280 159 25 chr9 98497 98958 -142172486 - L2 LINE L2 -415 2898 2228 24 0 0 0 chr9 99052 99076 -142172368 + AT_rich Low_complexity Low_complexity 1 24 0 349 208 38 28 chr9 99094 99200 -142172244 + L1ME4a LINE L1 5942 6048 -73 652 286 156 4 chr9 99500 99731 -142171713 + MLT1I LTR MaLR 137 402 -7 392 313 43 24 chr9 100055 100266 -142171178 - L2 LINE L2 -1369 1945 1731 28 0 0 0 chr9 100545 100573 -142170871 + AT_rich Low_complexity Low_complexity 1 28 0 663 226 14 20 chr9 100667 100813 -142170631 + MLT1C LTR MaLR 321 465 -2 * 1384 228 49 62 chr9 100813 101295 -142170149 - MLT1H LTR MaLR -28 521 1 196 358 74 12 chr9 101479 101560 -142169884 + L3b LINE CR1 1478 1563 -20 321 211 22 56 chr9 101884 101974 -142169470 - MLT1J LTR MaLR 0 511 425 26 0 0 0 chr9 101978 102004 -142169440 + AT_rich Low_complexity Low_complexity 1 26 0 45335 36 2 1 chr9 102004 108151 -142163293 - L1PA4 LINE L1 0 6155 2 663 320 50 60 chr9 108154 108591 -142162853 - MLT1J LTR MaLR -74 437 5 931 275 71 75 chr9 108746 109197 -142162247 - MLT1J2 LTR MaLR -1 449 1 2148 141 0 0 chr9 109473 109779 -142161665 + AluJb SINE Alu 1 306 -6 3564 152 37 19 chr9 110669 111261 -142160183 - MER6A DNA MER2_type -2 603 1 233 236 0 18 chr9 111293 111348 -142160096 + (CA)n Simple_repeat Simple_repeat 2 55 0 704 275 101 9 chr9 111842 112169 -142159275 - L1ME4a LINE L1 -150 5971 5615 553 210 114 54 chr9 112774 112941 -142158503 - L2 LINE L2 0 3313 3137 244 257 100 0 chr9 112939 113009 -142158435 + MIR SINE MIR 116 192 -70 * 4574 122 18 1 chr9 113194 113872 -142157572 - L1MA5A LINE L1 -3 6294 5606 372 219 0 0 chr9 113949 114013 -142157431 - FRAM/FAM SINE Alu -102 64 1 297 274 88 39 chr9 114185 114287 -142157157 + MIR3 SINE MIR 82 188 -20 30 0 0 0 chr9 114575 114605 -142156839 + AT_rich Low_complexity Low_complexity 1 30 0 314 306 209 29 chr9 114609 114815 -142156629 - MIR SINE MIR -12 250 8 2569 42 0 13 chr9 116004 116310 -142155134 + AluY SINE Alu 2 303 -8 340 236 165 16 chr9 116313 116377 -142155067 + MER112 DNA MER1_type 4 57 -203 213 39 0 0 chr9 116377 116403 -142155041 + (CA)n Simple_repeat Simple_repeat 1 26 0 340 236 165 16 chr9 116403 116520 -142154924 + MER112 DNA MER1_type 57 212 -48 323 296 80 65 chr9 116569 116768 -142154676 + L2 LINE L2 3112 3313 0 2076 119 0 10 chr9 117287 117608 -142153836 - AluSx SINE Alu 0 312 1 1825 161 10 3 chr9 118038 118330 -142153114 + AluSx SINE Alu 1 294 -18 1511 154 60 39 chr9 118339 118624 -142152820 + AluJo SINE Alu 1 291 -21 746 191 0 0 chr9 118875 119013 -142152431 - FLAM_A SINE Alu 0 140 3 2235 60 0 14 chr9 119631 119912 -142151532 - AluY SINE Alu -9 302 26 725 189 0 9 chr9 120511 120741 -142150703 + CT-rich Low_complexity Low_complexity 1 227 0 2082 105 0 52 chr9 121703 122028 -142149416 - AluSx SINE Alu -4 308 1 187 315 39 85 chr9 122733 123038 -142148406 - L2 LINE L2 -1218 2096 1806 551 191 29 0 chr9 123752 123857 -142147587 + MIR SINE MIR 89 196 -66 2269 112 0 3 chr9 124068 124373 -142147071 - AluSg SINE Alu -6 304 1 275 276 17 0 chr9 124452 124519 -142146925 - MIR SINE MIR -89 119 51 2248 83 21 3 chr9 124621 124911 -142146533 + AluSx SINE Alu 1 295 -17 409 272 61 50 chr9 126926 127106 -142144338 + MER5A DNA MER1_type 8 189 0 2456 88 0 0 chr9 127486 127794 -142143650 + AluSx SINE Alu 1 308 -4 285 245 158 50 chr9 128447 128586 -142142858 + MIR SINE MIR 36 189 -73 399 246 146 9 chr9 128885 128995 -142142449 + L2 LINE L2 3189 3313 0 967 115 23 152 chr9 129544 129612 -142141832 - MER5A DNA MER1_type 0 189 114 2351 88 3 0 chr9 129612 129917 -142141527 - AluSc SINE Alu -3 306 1 967 115 23 152 chr9 129917 130065 -142141379 - MER5A DNA MER1_type -75 114 1 2417 95 0 0 chr9 130693 130998 -142140446 - AluSx SINE Alu -7 305 1 1735 164 24 7 chr9 131125 131417 -142140027 + AluJo SINE Alu 1 297 -15 420 272 239 9 chr9 131552 131765 -142139679 + MIR SINE MIR 1 262 0 421 271 51 0 chr9 132221 132339 -142139105 + L2 LINE L2 2234 2357 -957 681 238 157 20 chr9 132594 132898 -142138546 + L1MC4a LINE L1 5531 5829 -341 460 213 28 0 chr9 132897 133005 -142138439 + L1ME2 LINE L1 5751 5861 -303 * 811 61 0 0 chr9 133108 133207 -142138237 + AluY SINE Alu 204 302 -9 22 0 0 0 chr9 133410 133432 -142138012 + AT_rich Low_complexity Low_complexity 1 22 0 1410 251 80 20 chr9 133499 134085 -142137359 - L1MEc LINE L1 -3288 2927 2307 386 0 0 39 chr9 134086 134137 -142137307 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 370 157 0 0 chr9 134140 134210 -142137234 + L1PA15 LINE L1 6096 6165 0 2161 206 140 27 chr9 134223 134809 -142136635 + L1ME1 LINE L1 5379 6030 -136 487 196 47 0 chr9 134809 134916 -142136528 + L1MA10 LINE L1 6216 6327 -7 287 290 103 30 chr9 134923 135025 -142136419 - L1MEc LINE L1 -4039 2357 2264 2214 113 0 0 chr9 135025 135325 -142136119 + AluSx SINE Alu 1 300 -12 287 290 103 30 chr9 135325 136155 -142135289 - L1MEc LINE L1 -4132 2264 1248 275 287 0 0 chr9 136699 136786 -142134658 + (TA)n Simple_repeat Simple_repeat 1 87 0 2393 88 0 0 chr9 137027 137332 -142134112 - AluSq SINE Alu -8 305 1 344 364 8 8 chr9 137912 138044 -142133400 - MIR3 SINE MIR -19 189 58 279 0 0 0 chr9 138465 138496 -142132948 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 466 290 45 28 chr9 138525 138701 -142132743 - MER5A DNA MER1_type 0 189 11 2199 130 0 3 chr9 139299 139606 -142131838 - AluJb SINE Alu -6 306 1 408 312 58 56 chr9 139774 140274 -142131170 - L1ME4a LINE L1 -238 5883 5385 4037 169 28 27 chr9 141162 141653 -142129791 - L1MB8 LINE L1 -14 6164 5670 2260 115 0 7 chr9 141653 141958 -142129486 - AluSx SINE Alu -9 303 1 4037 169 28 27 chr9 141958 142216 -142129228 - L1MB8 LINE L1 -508 5670 5414 269 259 0 12 chr9 144214 144238 -142127206 - L1MA10 LINE L1 0 6334 6311 673 264 48 39 chr9 144238 144469 -142126975 - L1ME1 LINE L1 -14 6152 5920 1958 126 10 14 chr9 144491 144784 -142126660 - AluJo SINE Alu -20 292 1 29 47 0 0 chr9 145514 145557 -142125887 + AT_rich Low_complexity Low_complexity 1 43 0 2145 102 3 58 chr9 145781 146106 -142125338 - AluSp SINE Alu -6 307 1 264 122 0 0 chr9 146563 146604 -142124840 + (T)n Simple_repeat Simple_repeat 1 41 0 424 300 40 27 chr9 147111 147261 -142124183 + MIR SINE MIR 20 171 -91 523 197 311 0 chr9 147529 147661 -142123783 + MER5B DNA MER1_type 5 177 -1 25 0 0 0 chr9 147673 147698 -142123746 + AT_rich Low_complexity Low_complexity 1 25 0 2259 97 0 0 chr9 147701 147989 -142123455 - AluSx SINE Alu -24 288 1 2123 127 0 0 chr9 147992 148291 -142123153 - AluSx SINE Alu -13 299 1 1924 138 7 7 chr9 148903 149209 -142122235 - AluJb SINE Alu 0 306 1 1799 153 0 32 chr9 149233 149541 -142121903 + AluJo SINE Alu 1 298 -14 349 20 40 0 chr9 149541 149591 -142121853 + (GAGAA)n Simple_repeat Simple_repeat 1 52 0 183 204 0 0 chr9 149641 149685 -142121759 + GA-rich Low_complexity Low_complexity 3 46 0 2233 283 114 20 chr9 150480 151568 -142119876 - L2 LINE L2 0 3313 2120 301 260 68 0 chr9 151607 151680 -142119764 + MER81 DNA DNA 1 78 -36 438 193 175 0 chr9 151704 151818 -142119626 - L2 LINE L2 -1297 2017 1884 270 179 36 0 chr9 151998 152054 -142119390 + MIR SINE MIR 84 141 -121 181 143 163 20 chr9 152425 152474 -142118970 + L2 LINE L2 3216 3271 -1 409 242 80 106 chr9 152481 152820 -142118624 - MLT2C1 LTR ERVL -1 396 67 * 664 179 23 37 chr9 152675 152858 -142118586 - MLT1E1 LTR MaLR -376 278 46 * 717 207 14 7 chr9 152857 153002 -142118442 - MLT2F LTR ERVL -517 146 1 2029 128 21 0 chr9 153072 153361 -142118083 + AluSx SINE Alu 1 295 -17 270 143 0 0 chr9 153718 153767 -142117677 + (TG)n Simple_repeat Simple_repeat 2 50 0 191 254 110 85 chr9 154265 154383 -142117061 + L2 LINE L2 3187 3307 -6 1476 181 26 32 chr9 154509 154818 -142116626 - AluJo SINE Alu 0 312 6 476 244 122 0 chr9 155224 155347 -142116097 + MIR SINE MIR 11 148 -114 1868 155 0 24 chr9 155347 155501 -142115943 + MER46B DNA MER2_type 1 19 -2712 2216 157 23 0 chr9 155501 155852 -142115592 - L1PB4 LINE L1 0 6156 5798 1868 155 0 24 chr9 155852 156026 -142115418 + MER46B DNA MER2_type 19 196 -40 307 235 133 10 chr9 156044 156142 -142115302 + MIR SINE MIR 148 257 -5 4138 83 13 0 chr9 156674 157205 -142114239 + L1PA14 LINE L1 5624 6161 0 336 228 238 0 chr9 158997 159098 -142112346 + MIR SINE MIR 16 140 -122 233 200 0 0 chr9 159197 159237 -142112207 - MIR SINE MIR -6 256 217 796 191 0 22 chr9 159993 160129 -142111315 + FLAM_A SINE Alu 1 133 0 773 308 76 0 chr9 160421 160658 -142110786 + MIR SINE MIR 6 260 -2 733 276 43 30 chr9 160669 160901 -142110543 - MIR SINE MIR -22 240 6 23 0 0 0 chr9 161708 161731 -142109713 + AT_rich Low_complexity Low_complexity 1 23 0 2072 143 56 30 chr9 161736 162233 -142109211 - L1MC2 LINE L1 0 6344 5752 1482 123 45 18 chr9 162270 162490 -142108954 - MER30 DNA MER1_type 0 230 5 580 278 88 10 chr9 163557 163863 -142107581 - L1ME4a LINE L1 -202 5919 5590 1887 155 3 26 chr9 163882 164191 -142107253 + AluJo SINE Alu 2 303 -9 2374 71 6 52 chr9 164191 164514 -142106930 + AluSp SINE Alu 1 309 -4 346 274 110 51 chr9 164630 164922 -142106522 - L1ME4a LINE L1 -748 5398 5090 183 42 0 0 chr9 165544 165568 -142105876 + (GGAGAA)n Simple_repeat Simple_repeat 3 26 0 398 315 144 27 chr9 166248 166546 -142104898 - L1ME LINE L1 -311 5810 5478 1767 193 34 70 chr9 166671 166978 -142104466 + L1ME1 LINE L1 5594 5880 -286 2418 102 0 0 chr9 166978 167282 -142104162 + AluSx SINE Alu 1 304 -8 1767 193 34 70 chr9 167282 167446 -142103998 + L1ME1 LINE L1 5880 6048 -118 230 243 71 0 chr9 169197 169267 -142102177 + GA-rich Low_complexity Low_complexity 2 76 0 470 322 38 17 chr9 169274 169470 -142101974 - MIR SINE MIR -59 203 3 2174 132 0 0 chr9 170243 170553 -142100891 + AluSx SINE Alu 1 310 -2 244 237 103 52 chr9 170592 170689 -142100755 - MIR3 SINE MIR -10 198 97 324 0 0 0 chr9 170719 170755 -142100689 + (TG)n Simple_repeat Simple_repeat 2 37 0 1370 142 0 5 chr9 171459 171663 -142099781 - AluJb SINE Alu -109 203 1 2413 64 7 3 chr9 171840 172136 -142099308 + AluY SINE Alu 1 297 -14 10681 213 63 13 chr9 172537 174947 -142096497 + L1PA16 LINE L1 3078 5566 -600 1746 152 6 108 chr9 174947 175282 -142096162 + AluJo SINE Alu 1 301 -1 10681 213 63 13 chr9 175282 175916 -142095528 + L1PA16 LINE L1 5566 6166 0 734 303 49 12 chr9 177117 177361 -142094083 + MIR SINE MIR 10 262 0 2494 62 0 10 chr9 177377 177685 -142093759 - AluY SINE Alu -6 305 1 725 188 17 15 chr9 177889 178162 -142093282 + L1MB3 LINE L1 5657 6123 -60 199 267 67 0 chr9 178167 178227 -142093217 - MIR SINE MIR -118 144 81 389 229 59 20 chr9 178556 178709 -142092735 - LTR33A LTR ERVL -25 498 340 843 190 49 33 chr9 178716 178900 -142092544 - MER5A DNA MER1_type 0 189 3 773 236 170 66 chr9 178906 179350 -142092094 - LTR50 LTR ERVL -210 585 17 2541 77 6 0 chr9 179447 179758 -142091686 - AluSp SINE Alu 0 313 1 4660 115 27 3 chr9 179779 180448 -142090996 + L1MA5 LINE L1 5609 6293 -7 529 307 63 31 chr9 180653 180762 -142090682 - L1ME4a LINE L1 -179 5942 5838 2225 98 0 7 chr9 180762 181057 -142090387 - AluSc SINE Alu -16 293 1 529 307 63 31 chr9 181057 181296 -142090148 - L1ME4a LINE L1 -283 5838 5583 264 150 0 0 chr9 182033 182073 -142089371 - Alu SINE Alu -19 283 244 2258 105 3 0 chr9 182086 182381 -142089063 + AluSq SINE Alu 1 296 -17 2199 86 0 7 chr9 182570 182848 -142088596 - AluSq SINE Alu -24 289 14 589 218 58 13 chr9 182917 183073 -142088371 + MLT1E LTR MaLR 1 163 -430 1952 135 7 3 chr9 183104 183400 -142088044 + AluSx SINE Alu 1 297 -15 1222 186 4 52 chr9 183404 183652 -142087792 - AluJo SINE Alu -76 236 1 1699 158 63 26 chr9 185607 185956 -142085488 + L1MA7 LINE L1 5880 6241 -50 525 141 10 10 chr9 185951 186050 -142085394 + L1MA7 LINE L1 6192 6290 -1 * 266 160 64 85 chr9 187157 187251 -142084193 - MLT1K LTR MaLR -16 572 481 1407 205 45 40 chr9 187458 187892 -142083552 + L1MC5 LINE L1 7499 7917 -44 791 274 45 0 chr9 189525 189726 -142081718 - MER63A DNA MER1_type 0 210 1 398 304 142 28 chr9 189781 190028 -142081416 - Charlie8 DNA MER1_type -2141 276 2 314 227 23 34 chr9 190159 190247 -142081197 - Charlie7 DNA MER1_type -2500 112 26 183 333 32 11 chr9 190498 190591 -142080853 + MIR3 SINE MIR 108 202 -6 1691 156 53 11 chr9 191115 191397 -142080047 + AluJo SINE Alu 1 294 -18 324 285 27 97 chr9 192009 192195 -142079249 - MER5A DNA MER1_type -11 178 6 460 344 81 9 chr9 194526 194747 -142076697 + MIR SINE MIR 20 256 -6 2128 136 0 0 chr9 194911 195213 -142076231 + AluSq SINE Alu 1 302 -11 2984 114 21 44 chr9 195285 195319 -142076125 - L1MB3 LINE L1 -11 6172 6139 2380 93 3 0 chr9 195319 195621 -142075823 - AluSg SINE Alu -7 303 1 2984 114 21 44 chr9 195621 196068 -142075376 - L1MB3 LINE L1 -44 6139 5702 327 328 39 56 chr9 196071 196251 -142075193 - MIR SINE MIR -39 223 47 2916 105 36 27 chr9 196929 197367 -142074077 - L1PB3 LINE L1 0 6154 5713 682 260 136 41 chr9 198466 198517 -142072927 - MLT1J1 LTR MaLR -10 440 395 1345 128 11 0 chr9 198517 198704 -142072740 - MER5A DNA MER1_type 0 189 1 682 260 136 41 chr9 198704 199026 -142072418 - MLT1J1 LTR MaLR -55 395 64 1885 155 3 13 chr9 199493 199797 -142071647 - AluJb SINE Alu -11 301 1 472 297 34 7 chr9 200454 200602 -142070842 + MIR SINE MIR 29 180 -82 2270 109 3 6 chr9 201039 201352 -142070092 - AluSq SINE Alu -1 312 1 205 233 233 58 chr9 202575 202747 -142068697 + MIR SINE MIR 49 250 -12 221 240 180 80 chr9 203232 203332 -142068112 + L2 LINE L2 3153 3262 -10 494 239 127 29 chr9 204152 204466 -142066978 - L1ME4a LINE L1 -6 6115 5771 1792 184 3 3 chr9 204749 205058 -142066386 - AluJo SINE Alu -3 309 1 2436 81 0 0 chr9 205420 205716 -142065728 + AluY SINE Alu 1 296 -15 2227 109 3 3 chr9 206904 207206 -142064238 + AluSx SINE Alu 5 306 -6 431 283 17 52 chr9 208909 208932 -142062512 + MIR SINE MIR 93 115 -147 2495 142 60 0 chr9 208932 209334 -142062110 - MSTC LTR MaLR -2 426 1 431 283 17 52 chr9 209334 209483 -142061961 + MIR SINE MIR 115 259 -3 1108 172 8 64 chr9 209773 209974 -142061470 + L1MB2 LINE L1 5933 6119 -52 2350 94 7 0 chr9 209974 210272 -142061172 + AluSx SINE Alu 1 300 -12 1108 172 8 64 chr9 210272 210320 -142061124 + L1MB2 LINE L1 6119 6168 -3 192 212 142 80 chr9 210515 210628 -142060816 + MIR SINE MIR 84 203 -59 312 308 0 0 chr9 210740 210831 -142060613 + L3 LINE CR1 1272 1362 -215 2322 94 0 3 chr9 211617 211914 -142059530 - AluSc SINE Alu -13 296 1 194 217 0 22 chr9 212000 212046 -142059398 - MIR3 SINE MIR -29 179 135 2010 148 3 0 chr9 212440 212744 -142058700 + AluSx SINE Alu 1 305 -7 722 229 71 0 chr9 213155 213338 -142058106 + MER3 DNA MER1_type 9 204 -5 3671 108 19 23 chr9 213806 214335 -142057109 + MER1A DNA MER1_type 1 527 0 234 105 0 0 chr9 214381 214419 -142057025 + (T)n Simple_repeat Simple_repeat 1 38 0 2335 106 0 0 chr9 214562 214864 -142056580 - AluSg SINE Alu -4 306 5 427 304 130 20 chr9 214870 215169 -142056275 - L1ME3 LINE L1 -337 5825 5494 226 225 8 150 chr9 215196 215316 -142056128 - MIR3 SINE MIR -28 180 78 1303 199 68 14 chr9 215318 215599 -142055845 + AluJo SINE Alu 1 296 -16 2103 111 3 24 chr9 216866 217163 -142054281 + AluSq SINE Alu 1 291 -22 234 0 0 0 chr9 217870 217897 -142053547 + MADE1 DNA Mariner 1 27 -53 1946 141 7 7 chr9 219324 219623 -142051821 + AluJb SINE Alu 3 301 -11 1523 193 4 7 chr9 222209 222484 -142048960 - AluJo SINE Alu -10 302 29 2244 90 7 3 chr9 224562 224850 -142046594 + AluSg SINE Alu 1 289 -21 248 258 32 0 chr9 225097 225159 -142046285 - L2 LINE L2 0 3272 3209 1962 112 0 0 chr9 226150 226410 -142045034 + AluSq SINE Alu 1 260 -53 1260 215 72 99 chr9 226566 227120 -142044324 - MLT1F1 LTR MaLR 0 567 29 2321 104 3 3 chr9 227293 227602 -142043842 - AluSc SINE Alu 0 309 1 2507 69 0 7 chr9 228347 228653 -142042791 + AluY SINE Alu 1 304 -7 234 91 0 0 chr9 229552 229585 -142041859 + (TC)n Simple_repeat Simple_repeat 2 34 0 1820 128 21 52 chr9 230171 230490 -142040954 - AluJo SINE Alu 0 314 5 2303 122 0 0 chr9 230667 230979 -142040465 + AluSx SINE Alu 1 312 0 276 242 333 0 chr9 231082 231202 -142040242 - MER5A DNA MER1_type 0 189 30 410 276 35 8 chr9 231363 231518 -142039926 + MIR SINE MIR 8 169 -62 189 0 0 0 chr9 231904 231925 -142039519 + (A)n Simple_repeat Simple_repeat 1 21 0 2315 112 0 10 chr9 232134 232446 -142038998 + AluSx SINE Alu 1 309 -3 1551 188 3 30 chr9 232978 233276 -142038168 + AluJo SINE Alu 1 290 -22 339 255 0 21 chr9 235723 235817 -142035627 + MIR3 SINE MIR 95 186 -22 412 239 99 59 chr9 236214 236436 -142035008 + L1ME4a LINE L1 5685 5915 -206 1903 168 0 13 chr9 236451 236760 -142034684 + AluJb SINE Alu 1 305 -7 305 329 264 3 chr9 237010 237391 -142034053 - L2 LINE L2 -223 3049 2575 315 268 12 0 chr9 237766 237848 -142033596 - MIR SINE MIR -149 113 31 849 242 19 53 chr9 239046 239310 -142032134 + MIR SINE MIR 8 262 0 530 183 23 53 chr9 239358 239489 -142031955 - L2 LINE L2 0 3313 3187 30 45 0 0 chr9 240740 240784 -142030660 + AT_rich Low_complexity Low_complexity 1 44 0 2167 96 55 0 chr9 240909 241200 -142030244 - AluSq SINE Alu 0 313 7 445 279 85 42 chr9 241386 241551 -142029893 + MER91A DNA MER1_type 1 172 -24 1943 148 7 3 chr9 241906 242203 -142029241 - AluJb SINE Alu -14 298 1 664 154 36 0 chr9 244892 245002 -142026442 + AluSq SINE Alu 41 154 -159 2156 79 0 8 chr9 245003 245294 -142026150 + AluSx SINE Alu 21 309 0 878 203 89 54 chr9 245385 245701 -142025743 - L1MC5 LINE L1 -182 7779 7453 380 278 71 35 chr9 246057 246226 -142025218 + MIR SINE MIR 34 208 -54 1296 164 80 42 chr9 246325 246554 -142024890 + MER33 DNA MER1_type 1 247 -2338 1996 154 0 13 chr9 246554 246866 -142024578 - AluJo SINE Alu -4 308 1 1296 164 80 42 chr9 246866 246947 -142024497 + MER33 DNA MER1_type 247 323 -1 596 312 63 28 chr9 246964 247281 -142024163 - MER102b DNA MER1_type -8 333 6 244 261 22 80 chr9 247674 247812 -142023632 - MIR3 SINE MIR -3 205 76 2055 137 3 0 chr9 247815 248100 -142023344 + AluJb SINE Alu 1 286 -26 720 183 92 0 chr9 249737 249879 -142021565 - L1MB7 LINE L1 -44 6140 5986 343 285 51 0 chr9 251055 251192 -142020252 - L2 LINE L2 -212 3060 2917 240 192 51 51 chr9 251491 251569 -142019875 - MER5A DNA MER1_type -98 91 14 406 241 76 45 chr9 252107 252307 -142019137 + AluSx SINE Alu 2 197 -105 405 258 111 42 chr9 252307 252490 -142018954 + AluSx SINE Alu 2 197 -105 427 256 110 42 chr9 252490 252921 -142018523 + AluSx SINE Alu 2 204 -98 1795 164 0 11 chr9 252921 253201 -142018243 + AluJo SINE Alu 6 282 -30 225 0 0 0 chr9 253204 253229 -142018215 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2044 143 0 13 chr9 253774 254074 -142017370 + AluJb SINE Alu 1 296 -16 605 254 54 22 chr9 254227 254412 -142017032 + Charlie8 DNA MER1_type 86 276 -2141 2349 93 3 19 chr9 255218 255353 -142016091 + AluSq SINE Alu 1 137 -176 2226 108 10 0 chr9 255353 255649 -142015795 + AluSq SINE Alu 1 299 -14 2349 93 3 19 chr9 255649 255826 -142015618 + AluSq SINE Alu 137 308 -5 1701 185 83 0 chr9 255928 256291 -142015153 - L1MC3 LINE L1 0 7785 7393 324 169 0 101 chr9 256298 256387 -142015057 - L1MB7 LINE L1 -19 6165 6086 255 330 10 0 chr9 256565 256665 -142014779 + MIR SINE MIR 35 135 -73 2488 68 0 0 chr9 256735 257043 -142014401 + AluY SINE Alu 1 308 -3 230 241 0 0 chr9 257086 257140 -142014304 + MER116 DNA Mariner 2 55 -25 798 173 20 0 chr9 257145 257295 -142014149 - MER63B DNA MER1_type 0 434 282 1060 188 73 0 chr9 257295 257513 -142013931 + L1MD3 LINE L1 7730 7963 -32 976 235 91 30 chr9 257515 257813 -142013631 - MER63B DNA MER1_type -118 318 3 24 53 0 0 chr9 257911 257949 -142013495 + AT_rich Low_complexity Low_complexity 1 38 0 1126 140 62 6 chr9 258720 258899 -142012545 - MER5A DNA MER1_type 0 189 1 2253 112 3 0 chr9 259262 259566 -142011878 + AluSx SINE Alu 1 305 -7 2117 127 3 13 chr9 260654 260954 -142010490 - AluSx SINE Alu -15 297 1 446 333 0 0 chr9 261202 261316 -142010128 + MER81 DNA DNA 1 114 0 400 278 21 35 chr9 261612 261665 -142009779 - MIR3 SINE MIR -2 206 154 698 185 204 0 chr9 261665 261693 -142009751 + MER5A DNA MER1_type 1 22 -167 261 0 0 0 chr9 261693 261722 -142009722 + (CAG)n Simple_repeat Simple_repeat 1 29 0 698 185 204 0 chr9 261722 261834 -142009610 + MER5A DNA MER1_type 22 178 -11 1630 134 37 50 chr9 261834 262133 -142009311 + AluJb SINE Alu 1 295 -17 698 185 204 0 chr9 262133 262148 -142009296 + MER5A DNA MER1_type 178 189 0 400 278 21 35 chr9 262148 262238 -142009206 - MIR3 SINE MIR -54 154 65 783 293 120 34 chr9 262749 263561 -142007883 + L2 LINE L2 2432 3312 -1 207 0 0 0 chr9 263922 263945 -142007499 + (T)n Simple_repeat Simple_repeat 1 23 0 2184 121 3 0 chr9 263957 264254 -142007190 + AluSq SINE Alu 1 298 -15 223 298 120 51 chr9 264516 264674 -142006770 + MER5A DNA MER1_type 5 173 -16 217 278 90 62 chr9 264548 264692 -142006752 - MER5A DNA MER1_type -27 162 15 * 1283 152 5 0 chr9 265018 265215 -142006229 + AluJo SINE Alu 114 311 -1 417 191 35 71 chr9 265450 265591 -142005853 - MIR SINE MIR 0 262 127 691 320 39 48 chr9 265889 266404 -142005040 - LTR33 LTR ERVL -4 517 8 315 0 0 0 chr9 267632 267667 -142003777 + (TAG)n Simple_repeat Simple_repeat 1 35 0 230 179 0 15 chr9 267957 268024 -142003420 + (TA)n Simple_repeat Simple_repeat 2 67 0 307 147 0 44 chr9 269040 269108 -142002336 + L1ME4a LINE L1 6056 6120 -1 1586 128 4 32 chr9 269223 269472 -142001972 + AluSx SINE Alu 62 303 -9 1175 222 15 11 chr9 269487 269507 -142001937 + L1MC4 LINE L1 7775 7793 -249 2095 123 0 3 chr9 269507 269799 -142001645 + AluSx SINE Alu 1 291 -21 1175 222 15 11 chr9 269799 270044 -142001400 + L1MC4 LINE L1 7793 8041 -1 299 335 49 18 chr9 270149 270313 -142001131 - MIR SINE MIR -40 222 54 23 33 0 0 chr9 270636 270666 -142000778 + AT_rich Low_complexity Low_complexity 1 30 0 358 205 134 0 chr9 270940 271052 -142000392 + L1ME4a LINE L1 5879 6005 -116 1017 151 0 2 chr9 271991 272651 -141998793 + (CCA)n Simple_repeat Simple_repeat 2 836 0 1113 138 0 0 chr9 272664 273205 -141998239 + (CCA)n Simple_repeat Simple_repeat 1 541 0 226 354 13 0 chr9 273225 273304 -141998140 + MIR SINE MIR 66 145 -63 1873 219 54 46 chr9 273305 273845 -141997599 - LTR55 LTR ERV -4 544 1 262 167 0 0 chr9 273894 273936 -141997508 + 5S rRNA rRNA 1 42 -79 286 290 9 19 chr9 274288 274395 -141997049 + CT-rich Low_complexity Low_complexity 2 107 0 328 333 57 0 chr9 274418 274541 -141996903 + MIR3 SINE MIR 31 160 -48 2128 122 3 0 chr9 274995 275289 -141996155 - AluSx SINE Alu -17 295 1 1964 110 15 15 chr9 275702 275959 -141995485 + AluSx SINE Alu 21 277 -35 315 0 0 0 chr9 275959 275994 -141995450 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 870 83 0 0 chr9 275993 276113 -141995331 + (TA)n Simple_repeat Simple_repeat 1 120 0 1964 110 15 15 chr9 275994 276127 -141995317 + AluSx SINE Alu 276 292 -20 301 205 70 123 chr9 277506 277677 -141993767 + MER103 DNA DNA 3 164 -2 1803 159 23 7 chr9 278312 278614 -141992830 + AluSx SINE Alu 1 307 -5 219 292 22 0 chr9 278835 278924 -141992520 + MIR SINE MIR 81 171 -91 398 174 61 98 chr9 279846 279978 -141991466 - L2 LINE L2 0 3313 3187 345 140 0 0 chr9 280962 281019 -141990425 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 57 0 0 chr9 281639 281674 -141989770 + AT_rich Low_complexity Low_complexity 1 35 0 3550 43 86 0 chr9 281682 282103 -141989341 - L1PA5 LINE L1 0 6154 5698 491 36 0 0 chr9 282103 282159 -141989285 + L1PA5 LINE L1 5654 5709 -445 544 256 145 0 chr9 282227 282434 -141989010 - L1ME3 LINE L1 -2 6160 5924 569 251 74 39 chr9 282435 282666 -141988778 - L1ME3 LINE L1 -279 5883 5645 8724 196 42 51 chr9 282761 283231 -141988213 + L1MB7 LINE L1 3077 3550 -2634 2143 114 0 0 chr9 283231 283512 -141987932 + AluSq SINE Alu 1 281 -32 198 0 0 0 chr9 283515 283537 -141987907 + (TAA)n Simple_repeat Simple_repeat 2 23 0 8724 196 42 51 chr9 283537 284221 -141987223 + L1MB7 LINE L1 3552 4240 -1944 1976 159 0 6 chr9 284221 284535 -141986909 + AluJb SINE Alu 1 312 0 8724 196 42 51 chr9 284535 285958 -141985486 + L1MB7 LINE L1 4240 5624 -560 2105 101 38 7 chr9 285958 286246 -141985198 + AluSq SINE Alu 1 297 -16 8724 196 42 51 chr9 286246 286496 -141984948 + L1MB7 LINE L1 5624 5875 -309 238 266 78 0 chr9 286499 286563 -141984881 - MIR SINE MIR -192 70 2 185 293 86 0 chr9 286639 286697 -141984747 - MIR SINE MIR -198 64 2 202 276 86 0 chr9 286706 286764 -141984680 - MIR SINE MIR -198 64 2 247 271 18 53 chr9 287173 287278 -141984166 - Charlie7 DNA MER1_type -1 2611 2513 213 39 0 0 chr9 287278 287304 -141984140 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 247 271 18 53 chr9 287304 287368 -141984076 - Charlie7 DNA MER1_type -99 2513 2448 204 206 0 0 chr9 287760 287794 -141983650 + (CGTG)n Simple_repeat Simple_repeat 4 37 0 353 338 54 39 chr9 288726 288930 -141982514 + MIR SINE MIR 19 225 -37 1803 130 45 0 chr9 289113 289406 -141982038 + AluSx SINE Alu 1 305 0 2111 109 26 13 chr9 290364 290668 -141980776 - AluSx SINE Alu -4 308 1 748 226 164 47 chr9 294592 294814 -141976630 + L1ME4a LINE L1 5666 5861 -260 2283 96 0 0 chr9 294814 295107 -141976337 + AluSx SINE Alu 12 304 -8 748 226 164 47 chr9 295107 295292 -141976152 + L1ME4a LINE L1 5861 6121 0 22 70 0 0 chr9 295692 295735 -141975709 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 296226 296247 -141975197 + AT_rich Low_complexity Low_complexity 1 21 0 729 229 38 0 chr9 296307 296464 -141974980 + MER5B DNA MER1_type 1 163 -15 2138 152 0 0 chr9 296500 296810 -141974634 - AluJb SINE Alu -2 310 1 646 142 21 57 chr9 296811 296952 -141974492 + L1MB4 LINE L1 6045 6180 0 1475 173 51 19 chr9 296986 297299 -141974145 + MER33 DNA MER1_type 2 324 0 2509 68 0 0 chr9 297351 297659 -141973785 + AluYb8 SINE Alu 1 308 -10 271 100 0 0 chr9 297668 297708 -141973736 + L1MB4 LINE L1 6132 6171 -9 1124 123 59 0 chr9 297709 297879 -141973565 + AluJo SINE Alu 125 304 -8 280 304 109 38 chr9 299403 299587 -141971857 + MER117 DNA MER1_type 1 197 0 2052 120 3 0 chr9 301061 301367 -141970077 - AluSx SINE Alu 0 307 1 2030 157 3 0 chr9 302193 302499 -141968945 + AluSx SINE Alu 1 307 -5 1867 126 55 14 chr9 302502 302795 -141968649 + AluSx SINE Alu 3 307 -5 1750 164 7 20 chr9 302969 303274 -141968170 - AluJo SINE Alu -11 301 1 1843 134 22 0 chr9 303615 303891 -141967553 - AluSx SINE Alu -18 294 13 228 204 20 0 chr9 304479 304528 -141966916 + (TA)n Simple_repeat Simple_repeat 1 50 0 29 47 0 0 chr9 306278 306321 -141965123 + AT_rich Low_complexity Low_complexity 1 43 0 1189 142 32 41 chr9 307105 307324 -141964120 + MER20 DNA MER1_type 1 217 -2 268 242 94 94 chr9 307446 307574 -141963870 - MIR SINE MIR -50 212 85 21 0 0 0 chr9 308635 308656 -141962788 + AT_rich Low_complexity Low_complexity 1 21 0 941 261 97 44 chr9 309220 309633 -141961811 - MLT1K LTR MaLR -25 563 129 262 232 58 29 chr9 310236 310305 -141961139 + 7SK RNA RNA 7 77 -116 686 296 16 0 chr9 310307 310496 -141960948 + MER117 DNA MER1_type 5 196 -1 533 289 16 0 chr9 310614 310735 -141960709 + MER96 DNA MER1_type? 50 172 -3 293 246 14 0 chr9 311751 311820 -141959624 - MIR SINE MIR -111 151 82 2123 132 0 3 chr9 312120 312416 -141959028 - AluSx SINE Alu -13 299 5 22 0 0 0 chr9 312570 312592 -141958852 + AT_rich Low_complexity Low_complexity 1 22 0 1728 174 23 7 chr9 312830 313134 -141958310 - AluJo SINE Alu -3 309 1 702 302 60 8 chr9 315803 316051 -141955393 - MIR SINE MIR 0 262 2 1111 263 143 52 chr9 316245 316436 -141955008 - MER21B LTR ERV1 -154 709 537 270 0 0 0 chr9 316436 316466 -141954978 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1111 263 143 52 chr9 316466 316924 -141954520 - MER21B LTR ERV1 -326 537 1 1617 218 40 17 chr9 317608 318127 -141953317 - L1ME1 LINE L1 -28 6138 5441 38 107 0 0 chr9 318905 319055 -141952389 + AT_rich Low_complexity Low_complexity 1 150 0 203 0 37 0 chr9 320136 320163 -141951281 + (TTTCC)n Simple_repeat Simple_repeat 2 29 0 1663 156 13 49 chr9 320195 320503 -141950941 - AluJo SINE Alu -10 302 6 2233 131 12 72 chr9 320563 320968 -141950476 - MLT1B LTR MaLR -7 383 3 2142 117 3 0 chr9 321169 321477 -141949967 + AluSp SINE Alu 1 309 0 340 307 136 6 chr9 321524 321700 -141949744 + MIR SINE MIR 20 218 -44 2172 128 7 0 chr9 323132 323438 -141948006 + AluSx SINE Alu 2 309 -3 1822 162 7 3 chr9 323442 323739 -141947705 + AluJb SINE Alu 1 298 -14 315 167 0 62 chr9 323975 324071 -141947373 - L1MC4 LINE L1 -1339 6703 6614 225 0 0 0 chr9 324078 324103 -141947341 + (T)n Simple_repeat Simple_repeat 1 25 0 1096 176 11 0 chr9 324252 324439 -141947005 + MER5A DNA MER1_type 1 189 0 461 253 15 32 chr9 324521 324679 -141946765 - MIR SINE MIR -56 152 28 2142 148 0 0 chr9 325523 325827 -141945617 - AluSx SINE Alu -8 304 1 444 132 15 0 chr9 325829 325897 -141945547 - AluJo SINE Alu -178 134 66 31 26 0 0 chr9 325909 325947 -141945497 + AT_rich Low_complexity Low_complexity 1 38 0 1556 135 135 17 chr9 326302 326598 -141944846 + MER44D DNA MER2_type 1 601 -8 574 203 104 12 chr9 327253 327313 -141944131 - MER5A DNA MER1_type -3 186 133 2001 111 3 51 chr9 327313 327629 -141943815 + AluJb SINE Alu 1 301 -11 574 203 104 12 chr9 327629 327731 -141943713 - MER5A DNA MER1_type -56 133 9 213 65 0 0 chr9 327868 327899 -141943545 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 298 113 75 0 chr9 328011 328064 -141943380 - L2 LINE L2 0 3313 3257 392 216 18 9 chr9 328209 328320 -141943124 + L1MB8 LINE L1 6064 6175 -3 760 249 72 17 chr9 329299 329536 -141941908 + MIR SINE MIR 2 251 -11 366 275 36 22 chr9 329685 329823 -141941621 + MIR3 SINE MIR 30 169 -39 932 263 22 0 chr9 329913 330141 -141941303 - MIR SINE MIR -29 233 1 813 234 202 55 chr9 330151 330586 -141940858 - MLT1J LTR MaLR -12 499 1 1832 156 10 10 chr9 330629 330917 -141940527 + AluJb SINE Alu 1 288 -24 311 150 62 0 chr9 331542 331612 -141939832 - MLT1G LTR MaLR -5 590 482 577 267 241 12 chr9 331803 332156 -141939288 - MLT1G LTR MaLR -196 394 1 270 192 55 27 chr9 332192 332265 -141939179 - MIR SINE MIR -70 192 118 646 238 70 70 chr9 333348 333628 -141937816 - L1MEd LINE L1 -4897 1222 940 2030 159 0 6 chr9 333628 333942 -141937502 - AluJb SINE Alu 0 312 1 646 238 70 70 chr9 333942 333989 -141937455 - L1MEd LINE L1 -5178 941 895 578 308 81 65 chr9 334009 334913 -141936531 - L1MEd LINE L1 -5191 928 11 435 303 86 6 chr9 334963 335138 -141936306 + MIR SINE MIR 49 237 -25 908 181 6 6 chr9 335211 335371 -141936073 + FRAM SINE Alu 1 160 -6 387 302 0 9 chr9 335399 335515 -141935929 - MER5B DNA MER1_type -58 120 6 197 95 0 24 chr9 336043 336085 -141935359 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr9 337282 337306 -141934138 + AT_rich Low_complexity Low_complexity 1 24 0 319 222 72 105 chr9 338077 338230 -141933214 + L2 LINE L2 3166 3313 0 1321 158 59 65 chr9 338255 338332 -141933112 - MER33 DNA MER1_type -2263 322 246 2037 137 0 14 chr9 338332 338624 -141932820 + AluJb SINE Alu 1 288 -24 1321 158 59 65 chr9 338624 338868 -141932576 - MER33 DNA MER1_type -2339 246 3 2347 86 0 0 chr9 339635 339925 -141931519 - AluSx SINE Alu -10 302 13 2259 56 3 25 chr9 339981 340311 -141931133 + AluY SINE Alu 2 325 0 1871 158 36 7 chr9 340315 340618 -141930826 + AluJo SINE Alu 1 312 0 269 307 70 26 chr9 341076 341190 -141930254 + MIR SINE MIR 29 147 -61 1090 221 45 5 chr9 343722 343944 -141927500 + AluJo SINE Alu 2 232 -80 581 186 57 44 chr9 344612 344778 -141926666 + MLT1H LTR MaLR 66 242 -307 570 226 17 0 chr9 344779 344894 -141926550 - MER45A DNA AcHobo -1 177 61 283 340 107 15 chr9 345205 345402 -141926042 - MIR SINE MIR -23 239 25 2281 103 0 0 chr9 345803 346093 -141925351 - AluSc SINE Alu -14 295 6 354 313 157 35 chr9 346396 346626 -141924818 + MIR SINE MIR 5 262 0 3671 162 15 5 chr9 347022 347613 -141923831 + MER50 LTR ERV1 1 597 -137 2248 90 66 0 chr9 347613 347945 -141923499 + MER4E LTR ERV1 1 354 -425 1639 143 0 8 chr9 347947 348214 -141923230 - AluSx SINE Alu 0 306 42 325 43 0 0 chr9 348214 348261 -141923183 + AluSp/q SINE Alu 253 299 -4 2363 90 0 7 chr9 348339 348639 -141922805 + AluSx SINE Alu 1 298 -14 885 125 42 0 chr9 351022 351166 -141920278 - AluSq SINE Alu -12 301 152 280 221 26 13 chr9 351341 351418 -141920026 - MLT1K LTR MaLR -2 586 509 207 271 21 42 chr9 351569 351665 -141919779 - MIR SINE MIR -101 161 68 186 365 129 0 chr9 352797 352882 -141918562 + L3 LINE CR1 1432 1527 -50 2180 136 48 8 chr9 353023 353375 -141918069 - MER47A DNA MER2_type 0 366 1 203 27 0 81 chr9 353381 353418 -141918026 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 845 107 0 0 chr9 353849 353961 -141917483 + FRAM SINE Alu 52 163 -13 358 305 94 24 chr9 354496 354709 -141916735 - MIR SINE MIR -3 259 32 2454 169 69 9 chr9 354913 355374 -141916070 + MER44D DNA MER2_type 59 602 -3 472 262 7 35 chr9 355394 355535 -141915909 - MER5B DNA MER1_type -22 156 20 287 349 0 0 chr9 355587 355696 -141915748 + MIR SINE MIR 84 192 -70 418 253 108 6 chr9 356366 356532 -141914912 + MIR SINE MIR 60 242 -20 793 261 48 102 chr9 357197 357395 -141914049 + MLT1K LTR MaLR 74 281 -307 563 173 58 14 chr9 357395 357534 -141913910 - L1MB8 LINE L1 -1 6177 6033 793 261 48 102 chr9 357534 357691 -141913753 + MLT1K LTR MaLR 281 395 -193 2357 101 10 0 chr9 357691 357998 -141913446 + AluSx SINE Alu 1 310 -2 793 261 48 102 chr9 357998 358161 -141913283 + MLT1K LTR MaLR 395 565 -23 192 125 0 0 chr9 358443 358475 -141912969 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1064 245 4 16 chr9 358481 358730 -141912714 - MIR SINE MIR -15 247 2 2223 133 23 8 chr9 359274 359626 -141911818 + MER47A DNA MER2_type 1 357 -9 277 319 81 56 chr9 360578 360738 -141910706 + MIR SINE MIR 34 197 -65 276 233 200 25 chr9 361002 361122 -141910322 + MIR3 SINE MIR 6 146 -62 262 316 34 34 chr9 361168 361285 -141910159 + L2 LINE L2 3197 3313 0 564 149 0 0 chr9 361462 361549 -141909895 + MER53 DNA DNA 3 89 -100 476 188 0 0 chr9 361482 361567 -141909877 - MER53 DNA DNA -12 177 93 * 241 271 156 0 chr9 361741 361837 -141909607 + MIR SINE MIR 152 262 0 1515 189 7 28 chr9 362320 362635 -141908809 + AluJo SINE Alu 1 309 0 1065 224 74 82 chr9 362820 363059 -141908385 - L2 LINE L2 -1 3312 3073 1854 178 0 3 chr9 363059 363357 -141908087 - AluJo SINE Alu -11 301 5 1065 224 74 82 chr9 363357 363371 -141908073 - L2 LINE L2 -240 3073 3060 2306 95 0 3 chr9 363371 363667 -141907777 - AluSc SINE Alu -14 295 1 1065 224 74 82 chr9 363667 363805 -141907639 - L2 LINE L2 -253 3060 2922 2440 130 5 19 chr9 363805 364174 -141907270 + THE1B LTR MaLR 1 364 0 1065 224 74 82 chr9 364174 364267 -141907177 - L2 LINE L2 -391 2922 2830 482 215 30 122 chr9 364487 364724 -141906720 + MIR SINE MIR 48 262 0 2448 83 3 13 chr9 364843 365156 -141906288 + AluSp SINE Alu 1 310 -3 1701 210 81 79 chr9 365180 365655 -141905789 + MLT1F LTR MaLR 35 513 -29 2248 92 31 0 chr9 365655 365947 -141905497 - AluSx SINE Alu -11 301 1 1701 210 81 79 chr9 365947 365976 -141905468 + MLT1F LTR MaLR 513 540 -2 2337 102 0 0 chr9 365987 366280 -141905164 - AluSg SINE Alu -16 294 2 835 218 107 55 chr9 366559 366825 -141904619 + MLT1F1 LTR MaLR 73 363 -204 198 0 0 0 chr9 368069 368091 -141903353 + (CA)n Simple_repeat Simple_repeat 2 23 0 513 285 77 27 chr9 368138 368359 -141903085 + MIR SINE MIR 29 260 -2 1945 143 0 11 chr9 368372 368710 -141902734 + AluSx SINE Alu 1 335 0 222 233 33 33 chr9 368858 368918 -141902526 + L2 LINE L2 3213 3272 0 25 65 0 0 chr9 369015 369061 -141902383 + AT_rich Low_complexity Low_complexity 1 46 0 195 69 0 0 chr9 369531 369560 -141901884 + (CA)n Simple_repeat Simple_repeat 1 29 0 1679 134 4 4 chr9 369709 369955 -141901489 + AluJb SINE Alu 39 284 -28 183 42 0 0 chr9 369960 369984 -141901460 + (CA)n Simple_repeat Simple_repeat 1 24 0 254 287 0 46 chr9 370208 370295 -141901149 - MIR SINE MIR -74 188 106 2872 166 23 32 chr9 370592 370996 -141900448 + L1MB7 LINE L1 5202 5600 -578 2420 74 0 3 chr9 370996 371293 -141900151 + AluY SINE Alu 1 296 -15 2872 166 23 32 chr9 371293 371525 -141899919 + L1MB7 LINE L1 5600 5833 -345 2720 157 48 0 chr9 371793 372270 -141899174 - MER34 LTR ERV1 -16 526 27 294 73 0 0 chr9 373701 373742 -141897702 + (CA)n Simple_repeat Simple_repeat 1 41 0 568 190 52 35 chr9 373831 373947 -141897497 - FLAM_C SINE Alu -15 118 1 1662 171 67 3 chr9 374123 374468 -141896976 + L1MB7 LINE L1 5818 6184 0 2075 111 20 10 chr9 374629 374926 -141896518 - AluSx SINE Alu -12 300 1 1604 162 33 46 chr9 374936 375239 -141896205 - AluJb SINE Alu -13 299 1 300 385 7 28 chr9 375358 375501 -141895943 - MIR3 SINE MIR -33 175 36 21 57 0 0 chr9 376863 376898 -141894546 + GC_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 377185 377206 -141894238 + GC_rich Low_complexity Low_complexity 1 21 0 661 198 99 28 chr9 378105 378287 -141893157 - L1MB7 LINE L1 -2 6182 5988 237 65 0 0 chr9 378628 378659 -141892785 + (TG)n Simple_repeat Simple_repeat 1 31 0 1355 130 0 10 chr9 379267 379459 -141891985 + AluJo SINE Alu 97 286 -26 923 142 7 13 chr9 379491 379509 -141891935 - AluSx SINE Alu -158 154 137 1977 113 7 18 chr9 379509 379657 -141891787 - AluSq SINE Alu -32 281 136 2380 85 0 3 chr9 379657 379951 -141891493 - AluSc SINE Alu -11 298 6 1977 113 7 18 chr9 379951 380086 -141891358 - AluSq SINE Alu -177 136 1 923 142 7 13 chr9 380086 380222 -141891222 - AluSx SINE Alu -175 137 1 2451 77 6 0 chr9 380226 380537 -141890907 - AluSp SINE Alu 0 313 1 1567 267 68 34 chr9 380544 381135 -141890309 - L1ME3A LINE L1 -44 6126 5516 2194 96 7 0 chr9 381200 381491 -141889953 - AluSc SINE Alu -12 297 5 1740 157 0 51 chr9 381901 382213 -141889231 - AluJo SINE Alu -16 296 1 629 200 45 7 chr9 383498 383653 -141887791 + MIR SINE MIR 39 199 -63 1163 248 74 76 chr9 383912 384289 -141887155 - MLT1H1 LTR MaLR -4 622 207 999 231 54 30 chr9 384293 384331 -141887113 - MLT2D LTR ERVL 0 414 378 195 42 0 0 chr9 384331 384355 -141887089 + (TG)n Simple_repeat Simple_repeat 2 25 0 999 231 54 30 chr9 384355 384649 -141886795 - MLT2D LTR ERVL -36 378 74 557 229 83 13 chr9 384688 384845 -141886599 - MLT1H1 LTR MaLR -400 190 23 331 238 38 23 chr9 384869 385006 -141886438 - HAL1b LINE L1 -199 2308 785 1933 113 0 4 chr9 385869 386125 -141885319 + AluSx SINE Alu 36 290 -22 1188 111 0 0 chr9 386201 386381 -141885063 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1856 236 158 2 chr9 386563 387102 -141884342 - L1ME3A LINE L1 -159 6011 5389 2499 69 0 7 chr9 387162 387468 -141883976 + AluY SINE Alu 1 304 -7 261 0 0 0 chr9 389099 389128 -141882316 + (CA)n Simple_repeat Simple_repeat 2 30 0 2088 112 20 3 chr9 389208 389503 -141881941 - AluSg SINE Alu -10 300 1 2137 129 3 0 chr9 389836 390138 -141881306 - AluSx SINE Alu -9 303 1 2339 97 3 0 chr9 390990 391288 -141880156 - AluSp SINE Alu -12 301 3 2021 150 0 10 chr9 392156 392463 -141878981 + AluJb SINE Alu 1 304 -8 264 271 85 42 chr9 392483 392601 -141878843 - MLT1I LTR MaLR -232 177 55 2219 112 3 3 chr9 393663 393968 -141877476 - AluSx SINE Alu -7 305 1 23 0 0 0 chr9 394326 394349 -141877095 + AT_rich Low_complexity Low_complexity 1 23 0 1268 276 173 28 chr9 395098 396125 -141875319 + L2 LINE L2 2131 3307 -6 2040 143 3 0 chr9 396616 396917 -141874527 - AluSx SINE Alu -10 302 1 2316 96 0 26 chr9 397083 397395 -141874049 - AluSx SINE Alu -8 304 1 306 0 0 0 chr9 397451 397485 -141873959 + (TG)n Simple_repeat Simple_repeat 2 35 0 1721 115 4 27 chr9 397486 397747 -141873697 - AluSx SINE Alu -23 289 35 916 141 7 0 chr9 398531 398666 -141872778 + AluJo SINE Alu 1 136 -176 259 241 0 0 chr9 398832 398886 -141872558 + MER116 DNA Mariner 5 58 -22 708 251 137 38 chr9 398888 399310 -141872134 - HAL1 LINE L1 -167 2340 1877 1083 233 149 73 chr9 399313 399383 -141872061 - HAL1 LINE L1 -719 1788 1725 1874 151 3 0 chr9 399383 399701 -141871743 - AluSq SINE Alu 0 319 1 1083 233 149 73 chr9 399701 399967 -141871477 - HAL1 LINE L1 -782 1725 1481 2119 73 59 21 chr9 399967 400256 -141871188 + AluY SINE Alu 1 300 -11 1083 233 149 73 chr9 400256 400560 -141870884 - HAL1 LINE L1 -1026 1481 1097 2307 89 3 22 chr9 400570 400883 -141870561 - AluSx SINE Alu 0 312 6 1929 157 7 0 chr9 400906 401199 -141870245 - AluJb SINE Alu -17 295 1 402 100 0 0 chr9 401335 401395 -141870049 + (CA)n Simple_repeat Simple_repeat 2 61 0 434 83 0 4 chr9 401395 401599 -141869845 - AluSc SINE Alu -17 292 1 1152 309 100 17 chr9 401614 402203 -141869241 - L1MC4a LINE L1 -1847 5961 5324 21 0 0 0 chr9 402400 402421 -141869023 + AT_rich Low_complexity Low_complexity 1 21 0 273 241 114 32 chr9 402421 402579 -141868865 - L1P LINE L1 -1090 5056 4886 1450 169 126 0 chr9 402807 403068 -141868376 + AluJb SINE Alu 1 294 -18 1690 182 31 3 chr9 403257 403548 -141867896 + AluJo SINE Alu 1 299 -13 185 0 40 0 chr9 403945 403970 -141867474 + (TG)n Simple_repeat Simple_repeat 1 26 0 962 86 0 0 chr9 404332 404460 -141866984 - AluSp/q SINE Alu -3 310 183 198 0 0 0 chr9 404465 404487 -141866957 + (T)n Simple_repeat Simple_repeat 1 22 0 1096 151 13 23 chr9 404487 404714 -141866730 - L1MB3 LINE L1 -36 6147 5917 300 297 97 0 chr9 405418 405563 -141865881 + MIR SINE MIR 72 230 -32 238 206 389 0 chr9 407524 407655 -141863789 - MIR SINE MIR -3 259 78 1010 235 12 20 chr9 407842 408097 -141863347 - MLT1D-int LTR MaLR -1118 253 1 1970 179 37 103 chr9 408099 408160 -141863284 - MLT1D LTR MaLR -4 501 438 1996 124 7 14 chr9 408160 408450 -141862994 + AluSx SINE Alu 5 292 -20 1970 179 37 103 chr9 408450 408924 -141862520 - MLT1D LTR MaLR -67 438 1 929 126 161 60 chr9 409756 409955 -141861489 + MER20 DNA MER1_type 1 219 0 219 274 36 48 chr9 410239 410323 -141861121 + MIR SINE MIR 96 178 -84 214 274 65 0 chr9 410830 410892 -141860552 + MIR SINE MIR 117 182 -80 2148 131 7 0 chr9 410975 411281 -141860163 - AluSx SINE Alu -4 308 1 7439 171 100 16 chr9 411313 411594 -141859850 - L1 LINE L1 -1446 4700 4444 1883 164 17 3 chr9 411594 411887 -141859557 - AluJo SINE Alu -15 297 1 7439 171 100 16 chr9 411887 413217 -141858227 - L1 LINE L1 -1702 4444 2954 2215 201 21 70 chr9 413236 413540 -141857904 + L1MA9 LINE L1 4695 5012 -1172 240 108 0 0 chr9 413540 413577 -141857867 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 2215 201 21 70 chr9 413577 413908 -141857536 + L1MA9 LINE L1 5012 5322 -862 2719 10 0 0 chr9 413908 414201 -141857243 + AluY SINE Alu 1 293 -18 2215 201 21 70 chr9 414201 414316 -141857128 + L1MA9 LINE L1 5322 5441 -743 922 113 8 15 chr9 414317 414450 -141856994 + AluSq/x SINE Alu 1 132 -180 3962 166 91 17 chr9 414450 415268 -141856176 + L1MA9 LINE L1 5432 6309 -3 2298 108 0 10 chr9 415374 415680 -141855764 + AluSq SINE Alu 1 303 -10 257 27 54 0 chr9 416099 416136 -141855308 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1809 151 18 7 chr9 416139 416423 -141855021 - AluJo SINE Alu -25 287 1 235 333 86 37 chr9 416922 417084 -141854360 - L2 LINE L2 -491 2823 2654 416 282 189 18 chr9 417330 417663 -141853781 - L2 LINE L2 -881 2433 2044 2281 84 3 34 chr9 417825 418147 -141853297 - AluSx SINE Alu 0 312 1 392 352 101 6 chr9 418149 418308 -141853136 - MER91A DNA MER1_type -19 177 4 1103 203 28 24 chr9 418324 418536 -141852908 + MER20 DNA MER1_type 7 219 0 24 67 0 0 chr9 420816 420861 -141850583 + AT_rich Low_complexity Low_complexity 1 45 0 889 137 0 30 chr9 420897 421028 -141850416 + AluJo SINE Alu 1 127 -185 901 198 19 0 chr9 422564 422721 -141848723 + AluJo SINE Alu 137 296 -6 524 318 71 82 chr9 423711 423866 -141847578 - L2 LINE L2 -35 3237 3082 1932 145 13 26 chr9 423866 424169 -141847275 + AluJo SINE Alu 1 299 -13 524 318 71 82 chr9 424169 424353 -141847091 - L2 LINE L2 -190 3082 2902 250 303 15 0 chr9 424355 424421 -141847023 - L2 LINE L2 -626 2688 2622 2038 116 3 14 chr9 424963 425256 -141846188 + AluJo SINE Alu 1 290 -22 310 288 169 6 chr9 425425 425585 -141845859 - MIR SINE MIR -17 245 60 22 0 0 0 chr9 425981 426003 -141845441 + AT_rich Low_complexity Low_complexity 1 22 0 717 193 14 14 chr9 426004 426149 -141845295 - MER5A DNA MER1_type 0 189 45 2169 155 63 86 chr9 426153 426549 -141844895 - MLT2B2 LTR ERVL -10 505 122 3501 109 40 0 chr9 426549 427043 -141844401 - MER75 DNA T2_type 0 514 1 2169 155 63 86 chr9 427043 427157 -141844287 - MLT2B2 LTR ERVL -393 122 7 298 180 0 0 chr9 427163 427213 -141844231 - MER5A DNA MER1_type -138 51 2 919 188 6 6 chr9 429139 429309 -141842135 + AluJb SINE Alu 139 308 -4 384 234 53 66 chr9 429321 429547 -141841897 + L1MC5 LINE L1 7713 7935 -26 1523 169 99 0 chr9 429848 430121 -141841323 + AluJb SINE Alu 1 300 -12 2396 208 25 30 chr9 430401 430925 -141840519 + MER82 DNA MER2_type 11 531 -122 750 100 20 0 chr9 430926 431026 -141840418 + U6 snRNA snRNA 1 102 -5 519 217 130 0 chr9 431045 431160 -141840284 + MER82 DNA MER2_type 524 653 0 363 346 65 34 chr9 432197 432460 -141838984 + L3 LINE CR1 278 548 -1029 522 310 207 32 chr9 432813 433252 -141838192 + L3 LINE CR1 687 1202 -375 651 247 82 58 chr9 433388 433716 -141837728 - L1ME4a LINE L1 -216 5905 5570 221 298 60 0 chr9 433746 433830 -141837614 + L3 LINE CR1 1462 1550 -27 2925 10 0 0 chr9 434138 434452 -141836992 - AluYb8 SINE Alu -4 314 1 297 333 94 19 chr9 434664 434823 -141836621 + MIR SINE MIR 90 260 -2 231 289 144 0 chr9 434886 434983 -141836461 + L2 LINE L2 3198 3308 -5 2430 62 0 10 chr9 436155 436462 -141834982 - AluY SINE Alu -7 304 1 235 280 21 32 chr9 436496 436589 -141834855 - Charlie7 DNA MER1_type -11 2601 2510 3161 162 84 71 chr9 437498 437968 -141833476 - LTR8A LTR ERV1 0 727 243 5988 113 25 1 chr9 437968 439416 -141832028 - L1PA13 LINE L1 -11 6152 4681 3161 162 84 71 chr9 439416 439663 -141831781 - LTR8A LTR ERV1 -484 243 1 249 218 128 0 chr9 440114 440192 -141831252 - MIR SINE MIR -91 171 84 304 194 0 5 chr9 440547 440618 -141830826 - AluS SINE Alu -20 280 232 1508 175 46 15 chr9 440619 440882 -141830562 - AluJo SINE Alu -41 271 1 2756 98 83 2 chr9 441366 441762 -141829682 + MSTC LTR MaLR 1 428 0 392 278 25 102 chr9 442973 443218 -141828226 - L1ME LINE L1 -384 5737 5512 28 0 0 0 chr9 443660 443688 -141827756 + AT_rich Low_complexity Low_complexity 1 28 0 1688 169 13 23 chr9 444251 444425 -141827019 - AluJo SINE Alu -8 304 133 1869 80 0 8 chr9 444425 444664 -141826780 + AluY SINE Alu 57 293 -18 1688 169 13 23 chr9 444664 444796 -141826648 - AluJo SINE Alu -179 133 1 2413 63 0 3 chr9 445363 445670 -141825774 - AluY SINE Alu 0 306 1 2228 108 10 3 chr9 446675 446980 -141824464 + AluSx SINE Alu 1 307 -5 183 237 26 92 chr9 447367 447443 -141824001 - MIR SINE MIR -136 126 56 1891 154 3 14 chr9 447486 447779 -141823665 + AluJb SINE Alu 1 290 -22 2026 150 0 3 chr9 447840 448134 -141823310 + AluSx SINE Alu 1 293 -19 866 213 38 16 chr9 448148 448331 -141823113 + MER5A DNA MER1_type 2 188 -1 5007 65 194 27 chr9 448964 449672 -141821772 - LTR12 LTR ERV1 0 826 1 1055 208 33 0 chr9 449724 449907 -141821537 + MER5A DNA MER1_type 1 189 0 207 0 0 0 chr9 450430 450453 -141820991 + (TG)n Simple_repeat Simple_repeat 2 24 0 4538 119 134 31 chr9 452066 453430 -141818014 - pTR5 LTR ERV1 0 2606 1524 31 58 0 0 chr9 455772 455824 -141815620 + AT_rich Low_complexity Low_complexity 1 52 0 22 70 0 0 chr9 455986 456029 -141815415 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 456543 456564 -141814880 + AT_rich Low_complexity Low_complexity 1 21 0 284 312 178 36 chr9 456977 457253 -141814191 + L2 LINE L2 1771 2085 -1229 250 288 182 25 chr9 458140 458338 -141813106 - MIR SINE MIR -3 259 31 530 295 106 10 chr9 459753 459884 -141811560 - MIR SINE MIR -10 252 92 2271 125 0 0 chr9 459884 460196 -141811248 + AluSx SINE Alu 1 312 0 530 295 106 10 chr9 460196 460271 -141811173 - MIR SINE MIR -170 92 26 894 241 63 69 chr9 460322 460670 -141810774 - L1ME4a LINE L1 -286 5835 5490 300 213 516 7 chr9 460831 460986 -141810458 + MIR SINE MIR 21 254 -8 485 257 75 70 chr9 461211 461452 -141809992 - MIR SINE MIR -3 259 18 280 138 92 62 chr9 462407 462472 -141808972 + MIR3 SINE MIR 125 191 -17 349 222 178 10 chr9 462995 463251 -141808193 - L1ME LINE L1 -527 5594 5281 21 71 0 0 chr9 463258 463300 -141808144 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr9 463343 463372 -141808072 + AT_rich Low_complexity Low_complexity 1 29 0 370 327 96 6 chr9 463441 463712 -141807732 + L2 LINE L2 2653 2963 -309 319 310 14 41 chr9 463741 463770 -141807674 + L2 LINE L2 3121 3149 -164 1964 125 31 7 chr9 463770 464059 -141807385 - AluSq SINE Alu -17 296 1 319 310 14 41 chr9 464059 464174 -141807270 + L2 LINE L2 3149 3261 -52 2618 145 88 47 chr9 464183 464672 -141806772 + LTR22 LTR ERVK 1 509 0 310 294 34 62 chr9 464730 464907 -141806537 - L1ME4a LINE L1 -1088 5058 4887 30 0 0 0 chr9 466842 466872 -141804572 + AT_rich Low_complexity Low_complexity 1 30 0 761 188 0 0 chr9 467233 467350 -141804094 + FLAM_A SINE Alu 1 117 -16 2003 159 13 0 chr9 467614 467922 -141803522 - AluJo SINE Alu 0 312 1 2496 131 6 0 chr9 467999 468358 -141803086 - MER46B DNA MER2_type 0 236 1 4107 177 70 11 chr9 468831 469739 -141801705 - L1MB5 LINE L1 -1 6173 5215 2267 108 3 13 chr9 469750 470065 -141801379 - AluSx SINE Alu 0 312 1 2777 212 30 14 chr9 470067 470721 -141800723 - L1MB5 LINE L1 -1092 5054 4412 2251 116 6 3 chr9 470721 471032 -141800412 - AluSx SINE Alu 0 312 1 2777 212 30 14 chr9 471032 471121 -141800323 - L1MB5 LINE L1 -1734 4412 4336 2266 112 3 0 chr9 471121 471417 -141800027 - AluSp SINE Alu -15 298 2 2777 212 30 14 chr9 471417 471439 -141800005 - L1MB5 LINE L1 -1810 4336 4316 257 315 100 30 chr9 471665 471719 -141799725 - L1MC/D LINE L1 -1981 5827 5778 1098 219 8 60 chr9 471719 471970 -141799474 - MER8 DNA MER2_type -1 238 1 257 315 100 30 chr9 471970 472115 -141799329 - L1MC/D LINE L1 -2030 5778 5614 1991 157 57 21 chr9 472130 472513 -141798931 - L1MB2 LINE L1 0 6171 5775 1574 213 74 51 chr9 473203 473714 -141797730 - L1MD3 LINE L1 0 7995 7473 * 1668 202 18 9 chr9 473710 474037 -141797407 - L1MD3 LINE L1 -958 7037 6708 2187 103 0 0 chr9 474349 474658 -141796786 - AluSc SINE Alu 0 309 1 2237 107 3 16 chr9 475773 476083 -141795361 + AluSx SINE Alu 1 306 -6 217 250 0 0 chr9 476325 476373 -141795071 - MIR SINE MIR -2 260 213 1875 146 32 106 chr9 476375 476650 -141794794 + THE1C LTR MaLR 1 238 -137 2009 127 14 0 chr9 476650 476934 -141794510 + AluSx SINE Alu 1 288 -24 1875 146 32 106 chr9 476934 477063 -141794381 + THE1C LTR MaLR 238 375 0 2263 107 3 0 chr9 477123 477421 -141794023 + AluSg SINE Alu 2 300 -10 242 349 64 41 chr9 477494 477666 -141793778 - L2 LINE L2 -183 3089 2914 395 106 15 0 chr9 478243 478309 -141793135 + (CA)n Simple_repeat Simple_repeat 2 68 0 39 38 0 0 chr9 478309 478362 -141793082 + AT_rich Low_complexity Low_complexity 1 53 0 2214 108 3 0 chr9 478379 478667 -141792777 + AluSq SINE Alu 5 293 -20 236 186 17 0 chr9 478696 478755 -141792689 + (TA)n Simple_repeat Simple_repeat 2 61 0 405 269 56 0 chr9 478893 479001 -141792443 - L2 LINE L2 -1 3312 3199 2184 124 3 0 chr9 479309 479608 -141791836 + AluSx SINE Alu 6 305 -7 2691 3 0 0 chr9 480113 480421 -141791023 - AluYb8 SINE Alu 0 324 17 2129 123 0 10 chr9 481446 481755 -141789689 + AluSx SINE Alu 1 306 -6 2211 97 0 0 chr9 483828 484118 -141787326 - AluY SINE Alu -21 290 1 1443 89 139 0 chr9 485467 485669 -141785775 - MER30 DNA MER1_type 0 230 1 473 279 34 34 chr9 486649 486828 -141784616 - MER20B DNA MER1_type -604 179 1 1621 144 66 4 chr9 487064 487335 -141784109 - AluJo SINE Alu -23 289 2 1181 262 92 26 chr9 488729 489111 -141782333 - MLT1I LTR MaLR -2 407 1 2063 138 3 0 chr9 490310 490608 -141780836 - AluSx SINE Alu -13 299 1 2093 117 17 3 chr9 491955 492246 -141779198 + AluSx SINE Alu 1 295 -17 1941 112 0 28 chr9 492506 492793 -141778651 - AluSg SINE Alu -19 291 13 28 0 0 0 chr9 492795 492823 -141778621 + AT_rich Low_complexity Low_complexity 1 28 0 232 281 89 34 chr9 494383 494529 -141776915 - L2 LINE L2 -21 3292 3139 4666 177 73 24 chr9 494567 494722 -141776722 + L1MA9 LINE L1 4861 5007 -1305 2319 87 3 3 chr9 494722 495020 -141776424 + AluSg SINE Alu 1 298 -12 4666 177 73 24 chr9 495020 495409 -141776035 + L1MA9 LINE L1 5007 5375 -937 1979 145 0 46 chr9 495409 495734 -141775710 + AluJb SINE Alu 2 311 -1 4666 177 73 24 chr9 495734 496578 -141774866 + L1MA9 LINE L1 5375 6312 0 2221 106 17 0 chr9 496622 496915 -141774529 + AluSx SINE Alu 1 298 -14 236 314 81 5 chr9 497026 497131 -141774313 + MIR SINE MIR 52 163 -45 1742 121 133 0 chr9 498284 498548 -141772896 + AluSx SINE Alu 3 301 -11 197 293 53 0 chr9 499230 499305 -141772139 - MIR3 SINE MIR -1 207 129 351 380 41 36 chr9 500609 500830 -141770614 - L1MEd LINE L1 -5506 613 392 2123 114 13 3 chr9 500897 501195 -141770249 + AluSq SINE Alu 1 301 -12 263 293 27 0 chr9 501208 501283 -141770161 + HsTC2 DNA Tc2 1822 1898 0 266 200 0 0 chr9 501953 501998 -141769446 - L2 LINE L2 -18 3254 3210 1886 154 3 3 chr9 502066 502365 -141769079 + AluJb SINE Alu 1 299 -13 2087 70 19 4 chr9 502374 502645 -141768799 + AluY SINE Alu 1 275 -36 1728 86 0 5 chr9 502720 502940 -141768504 + AluSq SINE Alu 1 219 -94 871 161 0 0 chr9 502940 503077 -141768367 + AluSg/x SINE Alu 166 302 -8 189 246 53 0 chr9 503450 503507 -141767937 - L3b LINE CR1 -140 1443 1384 202 328 103 83 chr9 503841 504189 -141767255 + L2 LINE L2 2898 3252 -20 189 0 0 0 chr9 504782 504803 -141766641 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1989 114 0 14 chr9 504805 505094 -141766350 - AluSx SINE Alu -27 285 1 2262 57 3 7 chr9 505276 505584 -141765860 + AluY SINE Alu 1 307 0 1724 177 7 0 chr9 505768 506051 -141765393 - AluJo SINE Alu -27 285 1 2166 184 71 113 chr9 506170 506919 -141764525 - LTR8A LTR ERV1 -24 685 1 432 277 44 22 chr9 506920 507057 -141764387 - MLT1L LTR MaLR -128 487 348 340 289 44 0 chr9 507089 507203 -141764241 - MLT1L LTR MaLR -339 276 158 1977 115 83 0 chr9 507787 508075 -141763369 - AluSx SINE Alu 0 312 1 432 275 67 13 chr9 508177 508326 -141763118 - MER5B DNA MER1_type -16 162 6 2186 108 10 3 chr9 508686 508991 -141762453 + AluSg SINE Alu 1 307 -3 879 231 16 11 chr9 509558 509740 -141761704 - MER5A DNA MER1_type -6 183 1 181 125 25 0 chr9 509897 509937 -141761507 + MER5C DNA MER1_type 234 274 -50 480 292 26 13 chr9 509986 510140 -141761304 - MLT1L LTR MaLR -113 502 347 723 194 52 0 chr9 510279 510413 -141761031 - MSTC LTR MaLR -2 426 286 1985 139 30 0 chr9 511416 511717 -141759727 - AluSx SINE Alu -2 310 1 1866 189 36 25 chr9 511793 512153 -141759291 - MLT1A1 LTR MaLR -1 364 1 1070 133 36 0 chr9 512337 512503 -141758941 - AluSg/x SINE Alu -7 305 134 2070 129 3 0 chr9 512503 512797 -141758647 - AluSx SINE Alu -17 295 1 2291 95 0 0 chr9 512800 513096 -141758348 - AluY SINE Alu -15 296 1 1022 157 8 81 chr9 513900 514148 -141757296 - L1MB8 LINE L1 0 6178 5949 752 163 39 16 chr9 515650 515779 -141755665 - FLAM_C SINE Alu 0 133 2 2228 107 0 10 chr9 515794 516103 -141755341 - AluSx SINE Alu -6 306 1 2824 103 56 15 chr9 516455 516863 -141754581 - MSTA LTR MaLR -3 425 1 2077 127 3 13 chr9 516942 517250 -141754194 + AluSx SINE Alu 4 308 -4 1903 168 3 0 chr9 517265 517562 -141753882 + AluSx SINE Alu 7 304 -8 26 50 0 0 chr9 517626 517666 -141753778 + AT_rich Low_complexity Low_complexity 1 40 0 1284 95 0 18 chr9 517700 517869 -141753575 + AluSq SINE Alu 1 166 -147 504 121 0 0 chr9 517873 517939 -141753505 + AluS SINE Alu 221 286 -24 25 53 0 18 chr9 518287 518312 -141753132 + AT_rich Low_complexity Low_complexity 1 25 -31 821 143 0 53 chr9 518312 518445 -141752999 + FLAM_C SINE Alu 2 127 -6 25 53 0 18 chr9 518445 518476 -141752968 + AT_rich Low_complexity Low_complexity 25 56 0 2018 114 9 44 chr9 518775 519092 -141752352 - AluSx SINE Alu 0 312 7 201 154 0 0 chr9 519317 519356 -141752088 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2340 93 0 10 chr9 520100 520402 -141751042 - AluSc SINE Alu -10 299 1 189 359 0 0 chr9 520675 520728 -141750716 - L2 LINE L2 -87 3185 3133 235 287 109 20 chr9 520788 520889 -141750555 + MIR SINE MIR 107 216 -46 405 206 103 48 chr9 521357 521483 -141749961 - MER94 DNA DNA 0 134 2 339 270 20 10 chr9 522553 522653 -141748791 - MER5A DNA MER1_type -80 109 9 233 298 0 48 chr9 523109 523231 -141748213 + MIR SINE MIR 63 178 -30 271 284 56 128 chr9 524125 524339 -141747105 + L1ME4a LINE L1 5529 5714 -2094 2167 120 0 7 chr9 524339 524638 -141746806 + AluSq SINE Alu 1 297 -16 271 284 56 128 chr9 524638 524743 -141746701 + L1ME4a LINE L1 5714 5825 -1983 256 181 133 133 chr9 524805 524910 -141746534 + L1ME4a LINE L1 5945 6049 -72 355 274 128 34 chr9 525252 525431 -141746013 - MIR3 SINE MIR -9 199 4 587 218 68 0 chr9 526248 526381 -141745063 - MER5A DNA MER1_type -47 142 1 317 273 24 24 chr9 526411 526514 -141744930 + MER5A DNA MER1_type 3 116 -73 312 70 0 0 chr9 526915 526958 -141744486 + (GA)n Simple_repeat Simple_repeat 1 43 0 342 158 18 0 chr9 526991 527048 -141744396 - MER5A DNA MER1_type -131 58 1 472 250 57 10 chr9 527056 527182 -141744262 - MER5B DNA MER1_type 0 178 56 2257 109 0 3 chr9 527188 527492 -141743952 + AluSq SINE Alu 1 303 -10 477 244 179 19 chr9 527585 527741 -141743703 - MER5A DNA MER1_type 0 189 9 3351 176 48 42 chr9 528981 529726 -141741718 - L1MB2 LINE L1 0 6171 5422 726 161 154 0 chr9 530007 530137 -141741307 - FAM SINE Alu -34 151 2 225 293 67 60 chr9 530360 530510 -141740934 + L2 LINE L2 2717 2867 -447 977 213 65 54 chr9 530563 530934 -141740510 - L1MB2 LINE L1 -967 5179 4805 577 291 56 67 chr9 530936 531293 -141740151 + L2 LINE L2 2961 3313 0 909 178 16 27 chr9 531424 531609 -141739835 - MER5A DNA MER1_type -1 188 6 1448 185 240 9 chr9 531609 531955 -141739489 - MSTB LTR MaLR 0 426 1 7108 66 0 0 chr9 533245 534126 -141737318 - L1PA5 LINE L1 -20 6134 5254 4755 82 16 0 chr9 534134 534766 -141736678 + L1P LINE L1 4347 4988 -1158 2404 84 0 0 chr9 534766 535062 -141736382 - AluSx SINE Alu -16 296 1 1057 113 33 0 chr9 536063 536214 -141735230 + THE1C LTR MaLR 4 159 -216 1996 140 26 0 chr9 536215 536557 -141734887 - L1MA4 LINE L1 -181 6301 5951 657 125 0 21 chr9 536560 536656 -141734788 - AluJo SINE Alu -177 135 42 12963 177 41 21 chr9 536656 537998 -141733446 - L1MA4 LINE L1 -521 5961 4647 1568 164 40 43 chr9 537998 538297 -141733147 + AluJo SINE Alu 1 298 -14 12963 177 41 21 chr9 538297 539835 -141731609 - L1MA4 LINE L1 -1835 4647 3011 2145 122 34 0 chr9 539835 540131 -141731313 - AluSx SINE Alu -6 306 1 12963 177 41 21 chr9 540131 540500 -141730944 - L1MA4 LINE L1 -3471 3011 2651 583 84 122 0 chr9 540491 540598 -141730846 - L1MA4 LINE L1 -4203 1125 1006 * 7096 180 31 33 chr9 540605 540831 -141730613 - L1M1 LINE L1 -4031 2297 2072 1913 164 105 3 chr9 540831 541136 -141730308 - MER1B DNA MER1_type -1 336 1 7096 180 31 33 chr9 541136 543208 -141728236 - L1M1 LINE L1 -4256 2072 27 1938 72 110 0 chr9 543464 543728 -141727716 + AluY SINE Alu 1 293 -18 1763 79 0 0 chr9 543849 544063 -141727381 + AluSg/x SINE Alu 84 297 -15 240 277 88 22 chr9 544094 544231 -141727213 + MARNA DNA Mariner 424 569 -17 590 297 52 9 chr9 544237 544449 -141726995 + MIR SINE MIR 25 245 -17 2161 125 3 6 chr9 545298 545610 -141725834 - AluSx SINE Alu -1 311 1 2122 114 7 3 chr9 546806 547105 -141724339 - AluSx SINE Alu -12 300 1 25 31 0 0 chr9 547105 547137 -141724307 + AT_rich Low_complexity Low_complexity 1 32 0 423 238 157 22 chr9 547139 547362 -141724082 - L1ME4a LINE L1 -65 6056 5804 4152 138 26 10 chr9 547766 548391 -141723053 - MER41B LTR ERV1 0 635 1 279 318 45 11 chr9 549916 550004 -141721440 + MIR SINE MIR 20 110 -98 364 253 80 49 chr9 550361 550523 -141720921 - MIR SINE MIR -1 261 95 1947 136 11 0 chr9 550555 550841 -141720603 + AluSx SINE Alu 9 297 -15 237 200 31 31 chr9 551380 551445 -141719999 + L1MC4 LINE L1 6636 6700 -1342 225 236 0 18 chr9 551448 551503 -141719941 + (TA)n Simple_repeat Simple_repeat 2 55 0 1978 124 32 3 chr9 551524 551807 -141719637 - AluSx SINE Alu -21 291 1 491 181 86 9 chr9 552662 552767 -141718677 - L2 LINE L2 -14 3299 3187 1828 150 10 26 chr9 553032 553338 -141718106 + AluJo SINE Alu 1 301 -11 219 241 17 121 chr9 553629 553745 -141717699 + MIR SINE MIR 128 231 -31 2263 110 0 0 chr9 554098 554398 -141717046 + AluSx SINE Alu 1 300 -12 508 287 66 26 chr9 554568 554840 -141716604 - L1ME4a LINE L1 -246 5875 5593 186 43 0 0 chr9 559122 559145 -141712299 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 249 263 61 30 chr9 560059 560158 -141711286 - L2 LINE L2 0 3272 3171 2159 111 24 0 chr9 560425 560714 -141710730 + AluSx SINE Alu 2 297 -15 192 77 0 0 chr9 562064 562090 -141709354 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2248 96 0 56 chr9 562106 562429 -141709015 + AluSx SINE Alu 1 305 -7 346 211 21 21 chr9 562543 562638 -141708806 + MIR SINE MIR 127 221 -41 896 155 0 14 chr9 563519 563661 -141707783 - FLAM_C SINE Alu -3 140 1 1818 163 3 17 chr9 563712 564013 -141707431 - AluJb SINE Alu -11 301 5 477 214 57 34 chr9 564616 564763 -141706681 - L1ME1 LINE L1 0 6178 6021 1614 176 54 7 chr9 564833 565111 -141706333 + AluJo SINE Alu 1 291 -21 369 192 0 0 chr9 567908 567981 -141703463 - MIR SINE MIR -178 84 12 2500 38 28 0 chr9 568111 568400 -141703044 + AluY SINE Alu 1 297 -14 241 240 173 58 chr9 569073 569177 -141702267 - L1MC4 LINE L1 -2 8040 7925 300 27 0 0 chr9 569177 569214 -141702230 + (TG)n Simple_repeat Simple_repeat 2 38 0 700 201 178 169 chr9 569222 569895 -141701549 - L1MC4 LINE L1 -403 7639 6961 341 243 0 0 chr9 570950 571024 -141700420 + L2 LINE L2 2684 2757 -557 393 254 133 23 chr9 571298 571471 -141699973 + L2 LINE L2 3122 3313 0 1408 149 0 5 chr9 571882 572090 -141699354 + AluJo SINE Alu 84 290 -22 1958 109 47 0 chr9 573225 573500 -141697944 - AluSp SINE Alu -21 292 5 974 167 39 39 chr9 573577 573781 -141697663 - MER20 DNA MER1_type 0 219 16 426 234 53 0 chr9 574485 574579 -141696865 + L2 LINE L2 3186 3284 -29 203 147 0 0 chr9 574596 574630 -141696814 + (GA)n Simple_repeat Simple_repeat 2 35 0 2169 114 0 13 chr9 575094 575392 -141696052 - AluSx SINE Alu -18 294 1 2275 102 0 29 chr9 575800 576114 -141695330 - AluSx SINE Alu -7 305 1 899 285 32 21 chr9 576258 576542 -141694902 - MLT1J LTR MaLR -1 510 224 1870 157 0 38 chr9 576799 577118 -141694326 + AluJo SINE Alu 1 307 -5 23 33 0 0 chr9 577137 577167 -141694277 + AT_rich Low_complexity Low_complexity 1 30 0 2006 94 0 0 chr9 577304 577559 -141693885 + AluSx SINE Alu 1 255 -57 2104 106 0 11 chr9 577715 577997 -141693447 - AluSq SINE Alu -30 283 5 22 0 0 0 chr9 578000 578022 -141693422 + AT_rich Low_complexity Low_complexity 1 22 0 280 221 91 65 chr9 578569 578723 -141692721 + L1ME4a LINE L1 5962 6119 -2 2225 92 10 16 chr9 581711 582016 -141689428 - AluSq SINE Alu -10 303 1 960 211 18 44 chr9 582095 582323 -141689121 + L1PA16 LINE L1 5942 6163 -3 214 275 38 12 chr9 582352 582432 -141689012 - MIR SINE MIR -89 173 92 2281 110 10 3 chr9 582436 582746 -141688698 + AluSx SINE Alu 1 312 0 791 169 0 8 chr9 586058 586182 -141685262 + FLAM_A SINE Alu 1 123 -10 411 312 69 13 chr9 586199 586430 -141685014 - L2 LINE L2 -18 3295 3052 2062 135 14 0 chr9 586462 586758 -141684686 - AluSx SINE Alu -12 300 1 217 256 136 5 chr9 588285 588430 -141683014 + MIR SINE MIR 28 256 -6 1059 163 25 64 chr9 588879 589082 -141682362 + AluJo SINE Alu 87 281 -31 1836 163 17 3 chr9 589110 589411 -141682033 + AluJb SINE Alu 7 311 -1 23 33 0 0 chr9 589711 589741 -141681703 + AT_rich Low_complexity Low_complexity 1 30 0 180 327 39 65 chr9 590340 590399 -141681045 + MIR3 SINE MIR 30 89 -119 1977 161 10 6 chr9 590399 590710 -141680734 - AluJb SINE Alu 0 312 1 180 327 39 65 chr9 590710 590803 -141680641 + MIR3 SINE MIR 89 178 -30 2250 99 0 29 chr9 591054 591367 -141680077 - AluSg SINE Alu -6 304 1 23 0 0 0 chr9 591691 591714 -141679730 + AT_rich Low_complexity Low_complexity 1 23 0 620 125 0 118 chr9 591844 591980 -141679464 - FRAM SINE Alu -12 164 45 1446 193 7 43 chr9 592451 592756 -141678688 - AluJo SINE Alu -18 294 1 628 190 22 51 chr9 592758 592895 -141678549 - AluJo/FLAM SINE Alu -169 133 1 335 134 15 30 chr9 593102 593169 -141678275 - MER5B DNA MER1_type 0 178 113 3045 166 75 46 chr9 593169 594102 -141677342 + LTR8-int LTR ERV1 5043 6257 -6 1033 186 142 9 chr9 594112 594338 -141677106 + LTR8 LTR ERV1 1 256 -435 23 0 0 0 chr9 594353 594376 -141677068 + AT_rich Low_complexity Low_complexity 1 23 0 297 125 0 0 chr9 594414 594470 -141676974 + (TC)n Simple_repeat Simple_repeat 1 56 0 206 155 14 127 chr9 594494 594565 -141676879 + MER5B DNA MER1_type 116 178 0 602 232 49 32 chr9 595386 595571 -141675873 + L1ME2 LINE L1 5943 6130 -34 804 151 8 16 chr9 595600 595726 -141675718 + FRAM SINE Alu 21 145 -31 682 223 82 62 chr9 595800 595915 -141675529 + L1MC5 LINE L1 7489 7600 -361 1558 180 10 37 chr9 595915 596210 -141675234 + AluJb SINE Alu 5 291 -21 682 223 82 62 chr9 596210 596497 -141674947 + L1MC5 LINE L1 7600 7899 -62 2238 95 0 14 chr9 596616 596910 -141674534 + AluSx SINE Alu 1 290 -22 211 230 148 82 chr9 597261 597370 -141674074 + MIR3 SINE MIR 37 158 -50 1805 106 0 16 chr9 597370 597616 -141673828 + AluSx SINE Alu 60 301 -11 211 230 148 82 chr9 597616 597641 -141673803 + MIR3 SINE MIR 158 180 -28 257 319 35 9 chr9 597737 597850 -141673594 + MER5A DNA MER1_type 50 165 -24 2125 119 3 0 chr9 598457 598750 -141672694 + AluSx SINE Alu 1 294 -18 1977 129 3 23 chr9 598778 599080 -141672364 + AluSq SINE Alu 1 296 -17 2190 100 21 3 chr9 599423 599714 -141671730 - AluSx SINE Alu -14 298 3 429 20 0 0 chr9 599781 599831 -141671613 + (TG)n Simple_repeat Simple_repeat 1 50 0 249 284 0 0 chr9 599848 599922 -141671522 - L1ME4a LINE L1 -205 5916 5843 5245 115 29 62 chr9 599949 600282 -141671162 + MER4D LTR ERV1 1 344 -559 2117 107 9 28 chr9 600282 600599 -141670845 - AluSx SINE Alu -1 311 1 5245 115 29 62 chr9 600599 601199 -141670245 + MER4D LTR ERV1 344 903 0 2180 112 0 3 chr9 602510 602797 -141668647 + AluSx SINE Alu 1 286 -26 1221 183 100 0 chr9 605642 605871 -141665573 + AluJo SINE Alu 40 291 -21 26 0 0 0 chr9 605896 605922 -141665522 + AT_rich Low_complexity Low_complexity 1 26 0 2000 135 26 13 chr9 605931 606234 -141665210 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr9 606459 606481 -141664963 + AT_rich Low_complexity Low_complexity 1 22 0 2227 101 0 0 chr9 606490 606776 -141664668 + AluSx SINE Alu 7 292 -20 1010 163 180 85 chr9 607671 607812 -141663632 + MER2 DNA MER2_type 36 162 -183 1943 145 0 3 chr9 607812 608102 -141663342 + AluSx SINE Alu 1 289 -23 1976 74 0 8 chr9 608102 608359 -141663085 - AluY SINE Alu -55 256 1 1010 163 180 85 chr9 608359 608499 -141662945 + MER2 DNA MER2_type 161 345 0 1734 142 42 21 chr9 608524 608812 -141662632 + AluJb SINE Alu 3 296 -16 500 266 97 7 chr9 609998 610152 -141661292 - MIR SINE MIR -75 187 20 194 133 67 22 chr9 611685 611730 -141659714 + L2 LINE L2 2677 2723 -591 1498 143 23 37 chr9 613426 613588 -141657856 - AluSx SINE Alu -16 296 138 2235 92 0 0 chr9 613588 613882 -141657562 - AluY SINE Alu -12 299 6 1498 143 23 37 chr9 613882 614019 -141657425 - AluSx SINE Alu -174 138 1 234 196 78 0 chr9 615455 615506 -141655938 - L1PA15-16 LINE L1 -6208 641 587 1628 151 36 4 chr9 615683 615962 -141655482 + AluJo SINE Alu 1 288 -24 2307 92 0 3 chr9 618560 618863 -141652581 - AluY SINE Alu -9 302 1 221 115 0 19 chr9 619414 619466 -141651978 + (GA)n Simple_repeat Simple_repeat 1 51 0 1635 186 20 0 chr9 619962 620258 -141651186 + AluJo SINE Alu 5 306 -6 713 180 0 43 chr9 620407 620546 -141650898 + FLAM_A SINE Alu 1 133 0 1419 129 126 16 chr9 620980 621258 -141650186 + AluSg SINE Alu 1 306 0 203 222 0 22 chr9 621268 621313 -141650131 - MER5A DNA MER1_type -108 81 38 646 226 97 0 chr9 622918 623113 -141648331 + L1ME3A LINE L1 5944 6157 -13 652 307 68 43 chr9 623307 623704 -141647740 + MLT1I LTR MaLR 3 409 0 664 181 22 14 chr9 623789 623927 -141647517 - MER105 DNA DNA -28 176 38 1065 190 16 0 chr9 623996 624180 -141647264 - MER5A DNA MER1_type -2 187 1 2273 100 0 0 chr9 624583 624884 -141646560 + AluSq SINE Alu 1 301 -12 2050 129 0 0 chr9 625473 625767 -141645677 - AluSx SINE Alu -17 295 2 1982 97 0 33 chr9 625988 626288 -141645156 + AluSx SINE Alu 1 290 -22 595 350 45 8 chr9 626843 627089 -141644355 - MLT1H LTR MaLR -273 276 22 1986 125 7 0 chr9 627490 627779 -141643665 - AluSx SINE Alu -21 291 1 2182 97 0 25 chr9 628586 628906 -141642538 - AluSx SINE Alu 0 312 1 2114 99 3 3 chr9 629180 629472 -141641972 - AluSg SINE Alu -15 295 4 197 273 13 39 chr9 629490 629567 -141641877 + L3 LINE CR1 1245 1319 -258 1977 122 7 7 chr9 629888 630191 -141641253 - AluSx SINE Alu -9 303 1 246 32 0 0 chr9 630321 630352 -141641092 + (TG)n Simple_repeat Simple_repeat 2 32 0 1013 177 74 5 chr9 630386 630589 -141640855 - AluJb SINE Alu -13 299 83 2061 189 16 2 chr9 630698 631122 -141640322 - L1MB4 LINE L1 0 6180 5751 1583 141 82 4 chr9 631137 631406 -141640038 - AluJb SINE Alu -22 290 1 665 254 78 20 chr9 631591 631835 -141639609 - MIR SINE MIR -3 259 2 1370 230 60 7 chr9 632954 633398 -141638046 - MLT2B1 LTR ERVL 0 520 1 323 305 29 0 chr9 634261 634366 -141637078 + L2 LINE L2 2560 2667 -647 2298 81 0 0 chr9 635255 635563 -141635881 + AluY SINE Alu 1 308 -3 1665 140 0 11 chr9 635605 635876 -141635568 + AluSx SINE Alu 1 268 -44 26 98 0 0 chr9 635907 635989 -141635455 + AT_rich Low_complexity Low_complexity 1 82 0 511 303 26 7 chr9 636453 636605 -141634839 + MIR SINE MIR 21 175 -87 767 136 0 0 chr9 636696 636806 -141634638 + AluSq/x SINE Alu 2 111 -202 4147 125 86 26 chr9 636808 637542 -141633902 + MER4E LTR ERV1 2 779 0 697 123 38 0 chr9 637542 637648 -141633796 + MER50 LTR ERV1 595 704 -30 187 368 123 0 chr9 637659 637765 -141633679 - MIR SINE MIR -60 148 30 192 280 140 10 chr9 638126 638226 -141633218 + MIR SINE MIR 76 188 -74 30263 115 20 55 chr9 638572 644976 -141626468 + L1PA8 LINE L1 12 6172 0 2082 118 26 3 chr9 645133 645438 -141626006 + AluSx SINE Alu 1 312 0 261 0 0 0 chr9 645441 645470 -141625974 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1710 109 13 63 chr9 645627 645929 -141625515 - AluSx SINE Alu 0 312 26 1663 135 60 0 chr9 645989 646256 -141625188 + AluSq SINE Alu 21 303 -10 1056 146 0 0 chr9 646424 646588 -141624856 - AluSq SINE Alu -15 298 135 2015 131 0 0 chr9 646590 646880 -141624564 - AluSx SINE Alu -22 290 1 1917 132 7 0 chr9 646952 647241 -141624203 + AluSp SINE Alu 9 299 -14 264 30 0 0 chr9 647243 647276 -141624168 + (TA)n Simple_repeat Simple_repeat 1 33 0 657 209 67 53 chr9 647289 647449 -141623995 + MLT1E LTR MaLR 1 166 -427 1611 148 36 43 chr9 647449 647753 -141623691 - AluSx SINE Alu -10 302 1 657 209 67 53 chr9 647753 647817 -141623627 + MLT1E LTR MaLR 166 228 -365 1384 290 52 44 chr9 647840 648382 -141623062 + L1MA6 LINE L1 160 705 -6144 240 35 0 0 chr9 648708 648737 -141622707 + (CA)n Simple_repeat Simple_repeat 1 29 0 3982 219 57 26 chr9 648756 649396 -141622048 + L1MA6 LINE L1 1383 2002 -4847 1603 184 0 0 chr9 649396 649663 -141621781 + AluJb SINE Alu 1 267 -45 3982 219 57 26 chr9 649663 649853 -141621591 + L1MA6 LINE L1 2002 2185 -4664 1340 197 49 21 chr9 649853 650137 -141621307 + AluJo SINE Alu 1 292 -20 3982 219 57 26 chr9 650137 650444 -141621000 + L1MA6 LINE L1 2185 2556 -4293 11903 169 52 27 chr9 650454 651837 -141619607 + L1MA6 LINE L1 3434 4780 -2222 8884 50 8 2 chr9 651837 652900 -141618544 + MER11C LTR ERVK 1 1070 -1 11903 169 52 27 chr9 652900 653538 -141617906 + L1MA6 LINE L1 4780 5400 -1602 2070 124 0 7 chr9 653538 653836 -141617608 - AluSx SINE Alu -12 300 5 11903 169 52 27 chr9 653836 654280 -141617164 + L1MA6 LINE L1 5400 5831 -1171 2031 102 0 11 chr9 654280 654564 -141616880 - AluSx SINE Alu -31 281 1 11903 169 52 27 chr9 654564 655456 -141615988 + L1MA6 LINE L1 5831 7002 0 1322 150 184 83 chr9 655467 655874 -141615570 - LTR47A LTR ERVL 0 452 5 1170 228 64 10 chr9 655977 656288 -141615156 - L1MA6 LINE L1 -6 6294 5967 3393 168 66 138 chr9 656374 656757 -141614687 - MER21A LTR ERV1 -16 915 506 2219 102 0 7 chr9 656757 657062 -141614382 + AluSx SINE Alu 1 303 -9 3393 168 66 138 chr9 657062 657649 -141613795 - MER21A LTR ERV1 -425 506 15 227 326 54 86 chr9 657874 658187 -141613257 + MLT1I-int LTR MaLR 1039 1341 -30 1446 248 18 33 chr9 658232 658559 -141612885 + MLT1I LTR MaLR 9 330 -79 1308 206 44 24 chr9 658559 658855 -141612589 + AluSq SINE Alu 1 302 -1 1446 248 18 33 chr9 658855 658926 -141612518 + MLT1I LTR MaLR 330 401 -8 1598 174 32 76 chr9 659232 659456 -141611988 - MLT1B LTR MaLR 0 390 191 2001 109 24 0 chr9 659456 659749 -141611695 - AluSq SINE Alu -13 300 1 1598 174 32 76 chr9 659749 659932 -141611512 - MLT1B LTR MaLR -199 191 1 414 292 137 0 chr9 660528 660689 -141610755 + MIR SINE MIR 77 259 -3 198 274 55 14 chr9 660678 660751 -141610693 + L2 LINE L2 3238 3313 0 * 1896 136 18 0 chr9 661134 661420 -141610024 + AluSc SINE Alu 1 291 -18 1800 172 13 0 chr9 661428 661736 -141609708 + AluJb SINE Alu 1 312 0 1164 204 0 0 chr9 661736 661758 -141609686 + AluJo SINE Alu 1 330 0 1543 158 71 128 chr9 662021 662385 -141609059 - MLT1C LTR MaLR -2 465 135 1734 147 34 0 chr9 662385 662678 -141608766 - AluJb SINE Alu -9 303 1 1543 158 71 128 chr9 662678 662806 -141608638 - MLT1C LTR MaLR -332 135 1 436 252 72 14 chr9 662919 663058 -141608386 - MIR SINE MIR -18 244 98 2058 98 3 20 chr9 663268 663565 -141607879 - AluSx SINE Alu -20 292 1 2173 84 3 0 chr9 663994 664280 -141607164 - AluSg SINE Alu -23 287 1 277 292 68 114 chr9 664410 664718 -141606726 - L2 LINE L2 0 3272 2979 1423 147 9 0 chr9 665433 665651 -141605793 - AluJb SINE Alu -19 293 74 257 222 19 0 chr9 665652 665706 -141605738 + LTR67 LTR ERVL 495 549 -8 378 232 11 17 chr9 665811 665904 -141605540 - AluS SINE Alu -228 75 1 1143 166 5 0 chr9 666171 666358 -141605086 - MER5A DNA MER1_type 0 189 2 519 219 80 22 chr9 666403 666540 -141604904 + LTR67 LTR ERVL 405 549 -8 2187 104 0 16 chr9 667019 667335 -141604109 - AluSq SINE Alu -2 311 1 1755 100 108 0 chr9 667731 667990 -141603454 - AluSg SINE Alu -17 293 7 381 202 326 8 chr9 668159 668288 -141603156 + MER5B DNA MER1_type 5 174 -4 323 207 49 0 chr9 668296 668388 -141603056 - MIR SINE MIR -73 135 32 1080 186 0 69 chr9 668708 668892 -141602552 - AluJo SINE Alu -23 289 94 2263 88 0 0 chr9 668892 669187 -141602257 - AluSg SINE Alu -15 295 1 297 0 0 0 chr9 669187 669220 -141602224 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1080 186 0 69 chr9 669220 669281 -141602163 - AluJo SINE Alu -216 96 60 1781 136 11 7 chr9 669410 669697 -141601747 + AluSg SINE Alu 1 288 -22 2466 51 0 10 chr9 669732 670046 -141601398 - AluY SINE Alu 0 311 1 418 247 155 12 chr9 670090 670284 -141601160 - L1MC4a LINE L1 -202 5919 5708 2138 112 3 0 chr9 670287 670591 -141600853 + AluSx SINE Alu 1 305 -7 2428 48 0 0 chr9 671031 671326 -141600118 - AluY SINE Alu -16 295 1 334 266 70 8 chr9 671377 671505 -141599939 + L1ME LINE L1 5548 5683 -438 637 309 85 0 chr9 671505 671728 -141599716 + MIR SINE MIR 20 261 -1 303 242 162 20 chr9 671815 671914 -141599530 + L1ME4a LINE L1 6004 6116 -5 1848 159 29 35 chr9 671952 672254 -141599190 - MER2 DNA MER2_type 0 344 43 2134 98 0 16 chr9 672254 672559 -141598885 + AluSx SINE Alu 1 300 -12 1848 159 29 35 chr9 672559 672602 -141598842 - MER2 DNA MER2_type -301 43 1 1648 144 4 4 chr9 673073 673337 -141598107 + AluSx SINE Alu 39 302 -10 1569 156 64 14 chr9 675428 675711 -141595733 - MLT1C LTR MaLR 0 467 171 2100 115 0 10 chr9 675723 676037 -141595407 - AluSx SINE Alu -1 311 1 276 254 56 16 chr9 676086 676212 -141595232 + L1ME LINE L1 5758 5888 -233 712 322 135 24 chr9 676287 676746 -141594698 + L2 LINE L2 2804 3313 0 2194 87 10 3 chr9 676756 677067 -141594377 + AluSq SINE Alu 1 313 0 946 156 12 0 chr9 677827 677987 -141593457 - AluSg/x SINE Alu -8 304 143 431 154 121 0 chr9 678096 678173 -141593271 + MLT1A1 LTR MaLR 1 92 -273 2129 109 0 7 chr9 678173 678475 -141592969 + AluSq SINE Alu 1 300 -13 431 154 121 0 chr9 678475 678488 -141592956 + MLT1A1 LTR MaLR 92 102 -263 366 127 18 0 chr9 678521 678576 -141592868 + MSTD LTR MaLR 341 396 0 217 173 19 0 chr9 678765 678817 -141592627 + A-rich Low_complexity Low_complexity 6 58 0 709 221 128 0 chr9 679256 679451 -141591993 - MIR SINE MIR -35 227 8 1402 278 57 15 chr9 679554 680026 -141591418 + LTR33 LTR ERVL 24 515 -6 514 260 117 0 chr9 680369 680523 -141590921 + MIR SINE MIR 49 220 -42 1376 102 13 35 chr9 680523 680749 -141590695 + AluSc SINE Alu 81 301 -8 991 10 59 22 chr9 680825 681250 -141590194 + (TG)n Simple_repeat Simple_repeat 1 440 0 607 198 27 0 chr9 681290 681401 -141590043 + MER106B DNA MER1_type 42 155 -904 21 36 0 0 chr9 681404 681432 -141590012 + AT_rich Low_complexity Low_complexity 1 28 0 358 179 0 0 chr9 681511 681567 -141589877 + MLT1A2 LTR MaLR 1 56 -318 2447 59 0 0 chr9 681568 681871 -141589573 + AluSg SINE Alu 1 303 -7 805 213 63 19 chr9 681871 682078 -141589366 + MLT1A2 LTR MaLR 159 374 0 1520 170 21 24 chr9 682171 682459 -141588985 + AluJo SINE Alu 11 297 -15 1866 143 3 19 chr9 683006 683313 -141588131 - AluSx SINE Alu -10 302 1 379 309 104 53 chr9 683532 683869 -141587575 + L2 LINE L2 2945 3298 -15 198 103 0 0 chr9 683985 684014 -141587430 + (A)n Simple_repeat Simple_repeat 1 29 0 1843 284 59 38 chr9 684516 685224 -141586220 + L1MEd LINE L1 1 723 -5396 2062 127 0 19 chr9 685316 685632 -141585812 + AluSx SINE Alu 1 310 -2 2064 119 3 3 chr9 685764 686074 -141585370 + AluSx SINE Alu 1 310 -2 478 291 179 14 chr9 686232 686455 -141584989 + MIR SINE MIR 3 262 0 1517 185 35 3 chr9 686587 686874 -141584570 + AluJo SINE Alu 2 297 -15 2296 183 71 54 chr9 686934 687080 -141584364 + L1MD1 LINE L1 5061 5203 -1039 1693 163 0 26 chr9 687080 687386 -141584058 + AluJo SINE Alu 1 298 -14 2296 183 71 54 chr9 687386 687465 -141583979 + L1MD1 LINE L1 5203 5279 -963 2082 121 0 16 chr9 687465 687778 -141583666 - AluSx SINE Alu -4 308 1 1876 132 10 3 chr9 687780 688069 -141583375 - AluJb SINE Alu -9 303 13 2296 183 71 54 chr9 688069 688375 -141583069 + L1MD1 LINE L1 5279 5578 -664 2236 109 0 0 chr9 688375 688688 -141582756 - AluSq SINE Alu 0 313 1 2296 183 71 54 chr9 688688 689119 -141582325 + L1MD1 LINE L1 5578 6070 -172 1158 243 28 12 chr9 688909 689234 -141582210 + L1MB8 LINE L1 5843 6172 -6 * 1505 178 7 17 chr9 689250 689537 -141581907 + AluJo SINE Alu 11 294 -18 2185 98 0 0 chr9 689537 689823 -141581621 + AluSg SINE Alu 1 286 -24 2187 76 26 7 chr9 689837 690128 -141581316 + AluSg1 SINE Alu 1 300 -9 270 115 0 0 chr9 690128 690180 -141581264 + (TA)n Simple_repeat Simple_repeat 2 53 0 2187 76 26 7 chr9 690180 690191 -141581253 + AluSg1 SINE Alu 300 309 0 263 286 118 17 chr9 690526 690645 -141580799 - L2 LINE L2 -21 3251 3121 482 250 24 18 chr9 691443 691588 -141579856 + L1ME3 LINE L1 5998 6146 -16 1848 116 61 0 chr9 691588 691865 -141579579 - AluSx SINE Alu -18 294 1 482 250 24 18 chr9 691865 691883 -141579561 + L1ME3 LINE L1 6146 6162 0 644 130 43 9 chr9 691894 692009 -141579435 + L1MB3 LINE L1 6063 6181 -2 910 174 6 6 chr9 692067 692228 -141579216 + AluJb SINE Alu 1 161 -151 207 0 0 0 chr9 692253 692276 -141579168 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 503 300 62 12 chr9 692665 692825 -141578619 - MIR3 SINE MIR -9 199 32 1915 148 7 0 chr9 692922 693232 -141578212 - AluJo SINE Alu 0 312 1 2252 69 0 0 chr9 693267 693580 -141577864 - AluY SINE Alu 0 313 1 1492 191 68 3 chr9 693585 693894 -141577550 - L1MB8 LINE L1 -11 6167 5839 273 228 0 0 chr9 693947 694026 -141577418 + GA-rich Low_complexity Low_complexity 3 81 0 335 307 114 55 chr9 694082 694284 -141577160 - MIR SINE MIR -29 233 20 628 243 80 57 chr9 694446 694747 -141576697 + L1MC4a LINE L1 5697 6004 -1804 1996 136 3 0 chr9 694757 695065 -141576379 + AluSx SINE Alu 1 309 -3 194 264 28 42 chr9 695065 695137 -141576307 - L2 LINE L2 -20 3252 3182 1040 146 6 0 chr9 695174 695339 -141576105 - FRAM SINE Alu -15 161 1 252 161 0 61 chr9 695714 695908 -141575536 + AluJo SINE Alu 38 300 -2 436 280 84 0 chr9 695913 696056 -141575388 + MIR SINE MIR 47 201 -61 1778 174 7 0 chr9 696086 696390 -141575054 + AluJb SINE Alu 1 306 -6 953 197 55 24 chr9 696938 697192 -141574252 - MER58B DNA MER1_type 0 341 80 1334 126 37 5 chr9 697193 697408 -141574036 + AluJb SINE Alu 79 300 -12 1319 191 20 20 chr9 697411 697715 -141573729 + AluJb SINE Alu 1 304 -8 754 166 45 85 chr9 697827 698050 -141573394 - AluJo SINE Alu -11 301 88 2124 95 10 3 chr9 698050 698356 -141573088 - AluSx SINE Alu -4 308 1 449 140 40 30 chr9 698415 698515 -141572929 + MER53 DNA DNA 1 101 -88 245 363 0 7 chr9 698577 698723 -141572721 + C-rich Low_complexity Low_complexity 2 146 0 1471 132 8 31 chr9 699699 699956 -141571488 + AluSx SINE Alu 32 282 -30 2208 97 0 0 chr9 700598 700897 -141570547 + AluSc SINE Alu 1 299 -10 2094 117 0 0 chr9 700905 701204 -141570240 + AluSx SINE Alu 1 299 -13 2015 117 0 3 chr9 701239 701544 -141569900 + AluSx SINE Alu 3 306 0 1277 156 5 9 chr9 701561 701785 -141569659 + AluJb SINE Alu 1 223 -89 1795 57 0 4 chr9 701787 702014 -141569430 - AluY SINE Alu -85 226 1 1898 121 47 13 chr9 702071 702236 -141569208 - AluSx SINE Alu 0 312 131 1911 101 21 21 chr9 702236 702548 -141568896 - AluSx SINE Alu 0 312 2 1898 121 47 13 chr9 702548 702680 -141568764 - AluSx SINE Alu -181 131 5 2059 93 4 0 chr9 702842 703158 -141568286 + AluSg SINE Alu 1 317 0 2240 80 7 7 chr9 703162 703463 -141567981 + AluSc SINE Alu 1 301 -8 2417 37 0 7 chr9 703651 703946 -141567498 + AluY SINE Alu 6 298 -13 2162 96 6 10 chr9 704414 704727 -141566717 + AluSp SINE Alu 1 312 -1 794 313 64 0 chr9 704750 704983 -141566461 - MIR SINE MIR 0 262 15 331 262 121 56 chr9 705382 705628 -141565816 + L2 LINE L2 2735 2998 -274 763 214 26 0 chr9 706130 706284 -141565160 - MIR SINE MIR -26 236 79 1693 97 0 4 chr9 706398 706636 -141564808 + AluSq SINE Alu 1 237 -76 834 141 0 15 chr9 706636 706765 -141564679 + AluSg/x SINE Alu 168 294 -18 3210 176 71 69 chr9 706937 707078 -141564366 - L1MB7 LINE L1 -5 6179 6040 309 26 0 0 chr9 707078 707116 -141564328 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2054 110 7 3 chr9 707119 707410 -141564034 - AluSc SINE Alu -17 292 1 1052 156 0 0 chr9 707413 707573 -141563871 - FRAM SINE Alu -6 160 1 3210 176 71 69 chr9 707573 707897 -141563547 - L1MB7 LINE L1 -146 6038 5716 2025 92 14 17 chr9 707897 708033 -141563411 + AluSq SINE Alu 1 136 -177 2244 94 3 0 chr9 708033 708332 -141563112 + AluSp SINE Alu 1 300 -13 2025 92 14 17 chr9 708332 708489 -141562955 + AluSq SINE Alu 136 293 -20 3210 176 71 69 chr9 708489 708810 -141562634 - L1MB7 LINE L1 -468 5716 5397 1712 159 28 0 chr9 708810 709099 -141562345 - AluJo SINE Alu -15 297 1 3210 176 71 69 chr9 709099 709260 -141562184 - L1MB7 LINE L1 -787 5397 5238 2090 125 3 0 chr9 709260 709572 -141561872 - AluSq SINE Alu 0 313 1 3210 176 71 69 chr9 709572 709663 -141561781 - L1MB7 LINE L1 -946 5238 5117 1918 136 3 3 chr9 709663 709965 -141561479 - AluSx SINE Alu -10 302 1 3210 176 71 69 chr9 709965 710010 -141561434 - L1MB7 LINE L1 -1067 5117 5074 2094 113 3 0 chr9 710210 710502 -141560942 - AluSx SINE Alu -17 295 3 2090 112 0 3 chr9 710504 710799 -141560645 - AluSg SINE Alu -16 294 1 2076 103 3 7 chr9 710801 711101 -141560343 - AluSq SINE Alu -14 299 1 1523 207 0 7 chr9 711412 711550 -141559894 + AluJo SINE Alu 1 138 -174 2300 74 0 0 chr9 711550 711846 -141559598 + AluY SINE Alu 1 296 -15 1523 207 0 7 chr9 711846 712011 -141559433 + AluJo SINE Alu 138 302 -10 396 0 0 0 chr9 712825 712869 -141558575 + (TG)n Simple_repeat Simple_repeat 2 45 0 405 139 93 0 chr9 712870 712956 -141558488 - L1ME2 LINE L1 -12 6152 6059 2365 69 0 3 chr9 714331 714635 -141556809 - AluSx SINE Alu -8 304 2 27 29 0 0 chr9 716651 716685 -141554759 + AT_rich Low_complexity Low_complexity 1 34 0 2355 80 0 6 chr9 716808 717122 -141554322 - AluSx SINE Alu 0 312 1 2006 124 7 0 chr9 717309 717608 -141553836 - AluSx SINE Alu -11 301 1 2041 113 7 10 chr9 718124 718433 -141553011 - AluSx SINE Alu -4 308 1 885 194 0 0 chr9 718680 718845 -141552599 - FRAM SINE Alu -11 165 1 332 224 116 68 chr9 718876 719023 -141552421 + MER5A DNA MER1_type 9 162 -27 183 237 17 51 chr9 719490 719549 -141551895 - MIR3 SINE MIR -18 190 134 795 234 66 5 chr9 719890 720087 -141551357 - MER3 DNA MER1_type 0 209 1 357 264 28 38 chr9 720318 720424 -141551020 + MIR3 SINE MIR 69 173 -35 2210 119 0 3 chr9 720644 720955 -141550489 - AluSx SINE Alu -2 310 1 493 289 76 25 chr9 721147 721344 -141550100 - MIR SINE MIR -54 208 2 2063 93 21 3 chr9 721930 722219 -141549225 - AluSp SINE Alu -19 294 1 2315 104 0 0 chr9 722847 723156 -141548288 + AluSx SINE Alu 1 309 -3 2082 128 3 0 chr9 723334 723638 -141547806 - AluSx SINE Alu -7 305 1 2051 100 17 0 chr9 724038 724337 -141547107 - AluSx SINE Alu -8 304 1 1681 153 23 17 chr9 725187 725487 -141545957 - L1MC1 LINE L1 -16 6317 6016 33 25 0 0 chr9 725536 725576 -141545868 + AT_rich Low_complexity Low_complexity 1 40 0 1454 140 21 103 chr9 725576 725905 -141545539 - AluYb8 SINE Alu -16 302 1 1484 154 3 55 chr9 725906 726198 -141545246 - AluJo SINE Alu -22 290 14 964 144 0 20 chr9 726213 726366 -141545078 - FRAM SINE Alu -11 165 16 1357 141 14 0 chr9 726390 726603 -141544841 - AluSg/x SINE Alu -15 295 80 2354 58 0 7 chr9 726873 727167 -141544277 - AluY SINE Alu -19 292 1 295 297 123 22 chr9 727454 727592 -141543852 + L2 LINE L2 3162 3313 0 1633 159 10 7 chr9 727724 728019 -141543425 - AluJo SINE Alu -16 296 1 2352 72 0 0 chr9 728025 728315 -141543129 - AluSx SINE Alu -20 292 3 2608 196 77 15 chr9 728365 728972 -141542472 - L1MB7 LINE L1 -20 6164 5520 1995 110 28 0 chr9 729133 729415 -141542029 + AluSx SINE Alu 1 290 -22 190 116 47 0 chr9 729415 729458 -141541986 + (TA)n Simple_repeat Simple_repeat 1 45 0 4109 31 0 0 chr9 729726 730205 -141541239 - L1PA4 LINE L1 0 6155 5677 23 33 0 0 chr9 730613 730643 -141540801 + AT_rich Low_complexity Low_complexity 1 30 0 963 147 47 47 chr9 730646 730692 -141540752 - L1MB4 LINE L1 0 6180 6135 2029 90 75 0 chr9 730692 730971 -141540473 + AluSq SINE Alu 1 300 -13 219 36 0 0 chr9 730971 730999 -141540445 + (TA)n Simple_repeat Simple_repeat 2 29 0 963 147 47 47 chr9 730999 731142 -141540302 - L1MB4 LINE L1 -43 6137 5990 2305 77 0 13 chr9 732119 732431 -141539013 + AluSx SINE Alu 5 312 0 1031 248 74 60 chr9 732588 733020 -141538424 - L2 LINE L2 -1 3312 2875 9401 57 12 81 chr9 733156 734603 -141536841 - SVA Other Other 0 1386 40 240 35 0 0 chr9 734612 734641 -141536803 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 1900 221 72 70 chr9 734941 735135 -141536309 + MLT1E2 LTR MaLR 2 194 -432 1573 181 7 16 chr9 735135 735438 -141536006 + AluJo SINE Alu 3 302 -10 1900 221 72 70 chr9 735438 735867 -141535577 + MLT1E2 LTR MaLR 194 626 0 508 190 60 9 chr9 735871 735987 -141535457 - L1MB7 LINE L1 -2374 5434 5313 286 313 55 16 chr9 736072 736200 -141535244 - L2 LINE L2 -1099 2215 2083 1891 119 51 0 chr9 736298 736593 -141534851 - AluSx SINE Alu -2 310 1 2314 67 0 7 chr9 736600 736897 -141534547 - AluY SINE Alu -13 298 4 318 285 97 24 chr9 737352 737501 -141533943 + MIR SINE MIR 18 185 -64 2267 98 0 0 chr9 737982 738287 -141533157 + AluSx SINE Alu 1 305 -7 181 241 13 152 chr9 739094 739252 -141532192 + L3b LINE CR1 1103 1238 -345 549 286 92 54 chr9 739575 739816 -141531628 - MIR SINE MIR -12 250 2 1886 129 17 3 chr9 740083 740378 -141531066 - AluJb SINE Alu -13 299 1 196 316 158 11 chr9 740597 740692 -141530752 + MIR SINE MIR 29 137 -71 1776 175 0 3 chr9 740828 741137 -141530307 + AluJb SINE Alu 1 308 -4 2173 91 0 3 chr9 742217 742529 -141528915 + AluSq SINE Alu 2 312 0 1563 163 31 17 chr9 742810 743104 -141528340 - AluJb SINE Alu -10 302 5 1438 148 47 12 chr9 743158 743414 -141528030 - AluJb SINE Alu -34 278 14 2205 57 0 30 chr9 743439 743736 -141527708 - AluY SINE Alu -18 293 6 760 160 15 0 chr9 743743 743874 -141527570 - FLAM_C SINE Alu 0 133 1 2285 199 127 16 chr9 744119 744171 -141527273 - L1MB7 LINE L1 0 6184 6139 2182 79 0 3 chr9 744171 744461 -141526983 - AluSg SINE Alu -21 289 1 2285 199 127 16 chr9 744461 744990 -141526454 - L1MB7 LINE L1 -45 6139 5538 1054 157 47 5 chr9 745013 745204 -141526240 - MLT2B3 LTR ERVL -355 199 1 776 178 16 26 chr9 745204 745395 -141526049 - L1MB7 LINE L1 -717 5467 5279 2154 81 0 42 chr9 745411 745719 -141525725 - AluSq SINE Alu -18 295 1 245 299 123 13 chr9 746016 746170 -141525274 + L3b LINE CR1 1176 1346 -237 2308 81 0 10 chr9 746902 747210 -141524234 - AluY SINE Alu -6 305 1 250 140 53 0 chr9 747863 747920 -141523524 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1592 184 7 3 chr9 748629 748928 -141522516 - AluJo SINE Alu -10 302 3 381 318 175 5 chr9 750850 751061 -141520383 - MIR SINE MIR 0 262 16 5047 201 61 77 chr9 751275 752545 -141518899 - Charlie1a DNA MER1_type -1311 1450 206 2211 110 7 0 chr9 752545 752854 -141518590 + AluSx SINE Alu 1 311 -1 5047 201 61 77 chr9 752854 753057 -141518387 - Charlie1a DNA MER1_type -2555 206 1 333 289 0 25 chr9 753135 753256 -141518188 - MER5B DNA MER1_type -60 118 1 2146 100 6 10 chr9 754861 755172 -141516272 - AluSq SINE Alu -3 310 1 1731 136 17 10 chr9 755612 755907 -141515537 + AluJo SINE Alu 3 299 -13 2152 93 3 13 chr9 756789 757089 -141514355 + AluSx SINE Alu 1 297 -15 4030 163 35 49 chr9 757130 757926 -141513518 - LTR1 LTR ERV1 0 785 1 1989 110 13 10 chr9 758347 758656 -141512788 - AluSx SINE Alu -2 310 1 24 32 0 0 chr9 758770 758801 -141512643 + AT_rich Low_complexity Low_complexity 1 31 0 1004 111 6 47 chr9 759141 759313 -141512131 + AluSq SINE Alu 133 297 -16 263 180 0 20 chr9 760181 760231 -141511213 + L2 LINE L2 3263 3311 -2 1728 143 27 7 chr9 760400 760700 -141510744 - AluJb SINE Alu -6 306 1 869 194 15 61 chr9 760908 760945 -141510499 - MER5A DNA MER1_type -2 187 150 892 133 0 15 chr9 760945 761080 -141510364 + FLAM_C SINE Alu 1 133 0 869 194 15 61 chr9 761080 761238 -141510206 - MER5A DNA MER1_type -39 150 1 829 138 57 13 chr9 762187 762346 -141509098 - FRAM SINE Alu 0 166 1 2117 107 0 49 chr9 762804 763131 -141508313 - AluSx SINE Alu -1 311 1 895 147 0 14 chr9 763158 763301 -141508143 + FLAM_C SINE Alu 1 141 -2 1660 134 0 16 chr9 763323 763576 -141507868 + AluJb SINE Alu 59 307 -5 2143 111 0 32 chr9 763609 763924 -141507520 - AluY SINE Alu -6 305 1 218 200 150 0 chr9 763994 764054 -141507390 - L2 LINE L2 -9 3263 3195 427 257 46 4 chr9 765360 765510 -141505934 + MER58A DNA MER1_type 1 216 -8 315 303 0 10 chr9 766340 766439 -141505005 + (CA)n Simple_repeat Simple_repeat 1 98 0 222 62 0 0 chr9 766887 766919 -141504525 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2205 104 0 3 chr9 766927 767215 -141504229 - AluSx SINE Alu -25 287 1 216 268 94 71 chr9 767371 767498 -141503946 + L3 LINE CR1 1445 1574 -3 1649 137 13 48 chr9 767622 767902 -141503542 - L1MA9 LINE L1 -1 6311 6042 2395 83 0 0 chr9 767902 768203 -141503241 - AluSc SINE Alu -8 301 1 1649 137 13 48 chr9 768203 768237 -141503207 - L1MA9 LINE L1 -270 6042 6008 1189 102 60 0 chr9 768381 768547 -141502897 - AluSg/x SINE Alu -4 306 131 350 195 78 0 chr9 768547 768624 -141502820 - L1MA9 LINE L1 -296 6016 5934 2344 98 0 0 chr9 768633 768928 -141502516 + AluSg SINE Alu 1 295 -15 2020 88 0 22 chr9 769191 769501 -141501943 - AluSc SINE Alu 0 319 16 660 131 0 0 chr9 769611 769710 -141501734 + FRAM SINE Alu 66 164 -12 2211 118 3 13 chr9 770204 770519 -141500925 - AluSx SINE Alu 0 312 1 1372 133 90 8 chr9 770959 771215 -141500229 - L1 LINE L1 -1577 4569 4293 1648 161 20 43 chr9 772787 773092 -141498352 - AluJo SINE Alu -14 298 1 1860 165 3 19 chr9 773101 773417 -141498027 - AluJb SINE Alu -1 311 1 2440 84 0 0 chr9 773419 773727 -141497717 - AluSx SINE Alu -4 308 1 2391 75 10 0 chr9 774012 774305 -141497139 - AluSx SINE Alu -11 301 6 2175 121 0 7 chr9 774592 774889 -141496555 - AluSx SINE Alu -17 295 1 194 158 0 0 chr9 776664 776702 -141494742 - L2 LINE L2 -20 3252 3215 2321 84 10 0 chr9 776763 777059 -141494385 + AluSp SINE Alu 1 299 -14 543 247 102 24 chr9 777163 777329 -141494115 - MER97b DNA MER1_type? -874 179 1 327 25 0 0 chr9 777575 777615 -141493829 + (TG)n Simple_repeat Simple_repeat 1 40 0 256 283 34 0 chr9 777887 777995 -141493449 - MIR SINE MIR -62 146 31 294 50 0 0 chr9 778121 778161 -141493283 + (CA)n Simple_repeat Simple_repeat 2 41 0 388 256 62 74 chr9 779712 779888 -141491556 + MER112 DNA MER1_type 3 176 -84 261 0 0 0 chr9 779930 779959 -141491485 + (TG)n Simple_repeat Simple_repeat 2 30 0 1804 155 7 17 chr9 780271 780562 -141490882 + AluJo SINE Alu 1 288 -24 1734 180 7 7 chr9 781809 782114 -141489330 - AluJb SINE Alu -7 305 1 702 260 18 27 chr9 783195 783414 -141488030 - MER20 DNA MER1_type -2 217 1 2355 98 7 3 chr9 783581 783888 -141487556 - AluSx SINE Alu 0 312 5 1673 154 44 65 chr9 784054 784437 -141487007 - THE1C LTR MaLR 0 375 1 549 220 54 30 chr9 784863 785031 -141486413 + MER5B DNA MER1_type 1 172 -6 348 137 61 34 chr9 785047 785173 -141486271 + MER58 DNA MER1_type 169 2420 0 1894 135 11 0 chr9 785714 785996 -141485448 + AluSx SINE Alu 1 285 -27 2572 66 0 0 chr9 786393 786697 -141484747 + AluY SINE Alu 1 304 -7 27 29 0 0 chr9 787812 787846 -141483598 + AT_rich Low_complexity Low_complexity 1 34 0 2313 87 0 3 chr9 787846 788133 -141483311 - AluY SINE Alu -25 286 1 1762 178 0 17 chr9 788474 788772 -141482672 - AluJo SINE Alu -19 293 1 3233 245 52 51 chr9 791626 792918 -141478526 - L2 LINE L2 -457 2857 1565 354 220 220 0 chr9 792930 793103 -141478341 + MER5C DNA MER1_type 11 221 -103 3470 145 73 16 chr9 793108 793755 -141477689 - L1MB5 LINE L1 0 6174 5491 1147 130 52 42 chr9 793776 793968 -141477476 + AluJo SINE Alu 85 278 -34 1661 176 8 0 chr9 794012 794279 -141477165 - AluJb SINE Alu -43 269 1 421 195 0 76 chr9 794299 794417 -141477027 + MER5C DNA MER1_type 215 323 -1 220 190 103 0 chr9 794419 794477 -141476967 - L2 LINE L2 -1750 1564 1501 208 253 67 67 chr9 795252 795327 -141476117 - MIR3 SINE MIR -18 190 116 2202 120 0 0 chr9 796171 796472 -141474972 - AluSx SINE Alu -11 301 1 207 211 0 0 chr9 797740 797778 -141473666 + T-rich Low_complexity Low_complexity 3 40 0 284 198 233 0 chr9 797819 797905 -141473539 - MIR SINE MIR -47 215 110 279 0 0 0 chr9 798788 798819 -141472625 + (GA)n Simple_repeat Simple_repeat 2 32 0 558 166 103 34 chr9 800803 800929 -141470515 - MER53 DNA DNA -1 188 72 350 0 44 0 chr9 800929 800974 -141470470 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1873 134 0 4 chr9 800977 801239 -141470205 - AluSx SINE Alu -51 261 1 558 166 103 34 chr9 801239 801283 -141470161 - MER53 DNA DNA -118 71 2 602 134 0 10 chr9 801400 801497 -141469947 - FLAM_A SINE Alu -12 130 35 1386 153 27 135 chr9 802316 802517 -141468927 - AluJo SINE Alu -14 298 146 2437 69 10 0 chr9 802517 802808 -141468636 - AluY SINE Alu -17 294 1 1386 153 27 135 chr9 802808 802940 -141468504 - AluJo SINE Alu -166 146 1 2097 163 39 5 chr9 802949 803335 -141468109 - L1MB7 LINE L1 0 6184 5786 1293 166 101 93 chr9 803573 803958 -141467486 - MLT1B LTR MaLR -2 388 1 180 0 0 0 chr9 804267 804287 -141467157 + (CATTT)n Simple_repeat Simple_repeat 2 21 0 1268 217 50 34 chr9 804667 804989 -141466455 - MER21B LTR ERV1 -124 739 413 2304 94 0 13 chr9 805015 805313 -141466131 - AluSx SINE Alu -14 298 5 881 210 24 54 chr9 805316 805521 -141465923 - MER21B LTR ERV1 -664 199 1 711 235 96 0 chr9 805712 805899 -141465545 - MER3 DNA MER1_type 0 209 5 616 204 0 72 chr9 806301 806482 -141464962 - L1MB7 LINE L1 -893 5253 5086 1016 169 0 12 chr9 806484 806644 -141464800 + FRAM SINE Alu 1 157 -19 911 165 20 42 chr9 806663 806877 -141464567 - L1M4 LINE L1 -1055 5091 4867 2359 86 3 7 chr9 808570 808871 -141462573 + AluSq SINE Alu 1 300 -13 5211 189 57 13 chr9 808914 811001 -141460443 - L1MB4 LINE L1 0 6180 3989 2589 176 6 6 chr9 811978 812461 -141458983 + L1M3 LINE L1 5310 5792 -388 * 4276 165 55 37 chr9 812454 813826 -141457618 + L1MB3 LINE L1 4787 6183 0 574 305 43 31 chr9 813846 814282 -141457162 - L1MB4 LINE L1 -2203 3943 3491 1769 169 3 0 chr9 814371 814673 -141456771 - AluJb SINE Alu -9 303 1 518 297 54 54 chr9 816062 816321 -141455123 + MIR SINE MIR 2 260 -2 1966 120 0 14 chr9 817240 817556 -141453888 - AluSx SINE Alu 0 312 1 354 293 166 50 chr9 818022 818487 -141452957 - L1MC4a LINE L1 -1877 5931 5413 1471 122 32 5 chr9 819253 819474 -141451970 - MER30 DNA MER1_type 0 230 4 195 234 78 47 chr9 819655 819719 -141451725 - MIR3 SINE MIR -1 207 142 700 102 0 0 chr9 819720 819818 -141451626 - AluSg/x SINE Alu -8 302 205 320 54 161 18 chr9 819819 819875 -141451569 - MIR SINE MIR -55 153 90 1889 150 17 0 chr9 820879 821004 -141450440 + AluSx SINE Alu 6 127 -185 387 0 0 0 chr9 821004 821047 -141450397 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1889 150 17 0 chr9 821047 821215 -141450229 + AluSx SINE Alu 127 304 -8 1226 155 163 26 chr9 821224 821488 -141449956 + AluJo SINE Alu 2 301 -1 3576 171 28 21 chr9 821493 822212 -141449232 - L1MA10 LINE L1 -7 6327 5604 501 254 191 11 chr9 822512 822701 -141448743 + MIR SINE MIR 40 262 0 33 25 0 0 chr9 823285 823325 -141448119 + AT_rich Low_complexity Low_complexity 1 40 0 530 309 124 5 chr9 824034 824244 -141447200 - MIR SINE MIR -8 254 20 394 272 54 0 chr9 824249 824341 -141447103 + L2 LINE L2 3168 3264 -8 302 339 16 16 chr9 825122 825243 -141446201 - L1MB4 LINE L1 -3380 2766 2646 2091 103 20 0 chr9 826739 827040 -141444404 - AluSg SINE Alu -3 307 1 230 299 31 10 chr9 827046 827143 -141444301 - L2 LINE L2 -1017 2297 2199 1625 166 14 7 chr9 827528 827811 -141443633 + AluJb SINE Alu 6 290 -22 3656 151 44 27 chr9 827839 828516 -141442928 + L1MB3 LINE L1 5450 6138 -45 1112 144 0 0 chr9 828518 828692 -141442752 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr9 828820 828842 -141442602 + AT_rich Low_complexity Low_complexity 1 22 0 1237 127 84 14 chr9 829040 829253 -141442191 - L1PA16 LINE L1 0 6166 5939 1935 143 3 0 chr9 829828 830135 -141441309 + AluSx SINE Alu 1 308 -4 2015 122 0 3 chr9 830473 830768 -141440676 - AluSx SINE Alu -18 294 1 2055 126 3 0 chr9 831618 831928 -141439516 - AluSx SINE Alu -1 311 1 223 333 67 0 chr9 832034 832109 -141439335 - L2 LINE L2 -2 3270 3191 291 227 82 31 chr9 832599 832696 -141438748 - MIR SINE MIR -56 206 105 394 171 13 13 chr9 833147 833223 -141438221 - MIR SINE MIR -114 148 73 296 262 37 0 chr9 833983 834061 -141437383 - MIR SINE MIR -58 150 76 194 0 0 37 chr9 834646 834673 -141436771 + (GGGTG)n Simple_repeat Simple_repeat 5 30 0 465 324 62 6 chr9 836849 837025 -141434419 - L1ME LINE L1 -462 5659 5474 23 0 0 0 chr9 838443 838466 -141432978 + AT_rich Low_complexity Low_complexity 1 23 0 205 161 0 0 chr9 840040 840071 -141431373 + polypyrimidine Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 840616 840646 -141430798 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 842974 842995 -141428449 + GC_rich Low_complexity Low_complexity 1 21 0 1839 101 63 7 chr9 843253 843539 -141427905 + AluSx SINE Alu 3 304 -8 208 53 53 0 chr9 847584 847622 -141423822 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 201 288 18 45 chr9 848616 848727 -141422717 + G-rich Low_complexity Low_complexity 3 110 0 326 222 9 19 chr9 849389 849497 -141421947 + (CCG)n Simple_repeat Simple_repeat 3 109 0 238 152 0 0 chr9 852685 852731 -141418713 - LTR66 LTR ERVL -168 442 397 437 209 9 9 chr9 854134 854239 -141417205 + MER53 DNA DNA 84 188 -1 229 220 17 17 chr9 854908 854967 -141416477 + CT-rich Low_complexity Low_complexity 3 61 0 220 299 46 46 chr9 855638 855725 -141415719 + L2 LINE L2 3186 3272 0 2081 88 10 10 chr9 856560 856857 -141414587 - AluY SINE Alu -14 297 1 2153 105 0 0 chr9 858711 859006 -141412438 + AluSg SINE Alu 1 295 -15 2852 137 46 0 chr9 859134 859513 -141411931 - L1MB3 LINE L1 -1 6182 5775 405 0 0 0 chr9 859513 859558 -141411886 + (TG)n Simple_repeat Simple_repeat 2 46 0 2852 137 46 0 chr9 859558 859654 -141411790 - L1MB3 LINE L1 -408 5775 5685 319 214 0 0 chr9 864032 864088 -141407356 - L2 LINE L2 0 3272 3217 1760 182 34 0 chr9 864901 865192 -141406252 + AluJb SINE Alu 1 301 -11 2393 107 0 0 chr9 865654 865962 -141405482 + AluSx SINE Alu 1 308 -4 185 310 200 0 chr9 866493 866638 -141404806 + MER5A DNA MER1_type 10 183 -6 311 361 67 0 chr9 868309 868489 -141402955 + MER91A DNA MER1_type 4 195 -1 2394 102 0 0 chr9 868929 869233 -141402211 - AluSc SINE Alu -5 304 1 2215 96 7 0 chr9 869566 869901 -141401543 + AluSq SINE Alu 1 313 0 1638 156 23 0 chr9 869987 870243 -141401201 + AluJo SINE Alu 1 262 -50 484 201 195 0 chr9 870253 870412 -141401032 - MIR SINE MIR 0 262 73 201 149 0 64 chr9 872114 872161 -141399283 + (GGAGAA)n Simple_repeat Simple_repeat 4 47 0 376 200 44 0 chr9 872942 873032 -141398412 - MER53 DNA DNA -15 174 81 279 0 0 0 chr9 873040 873071 -141398373 + (TG)n Simple_repeat Simple_repeat 2 32 0 511 163 24 65 chr9 873172 873295 -141398149 - MER53 DNA DNA -71 118 1 506 260 46 35 chr9 873376 873549 -141397895 + Charlie8 DNA MER1_type 2 176 -2241 211 238 32 16 chr9 873805 873868 -141397576 + MIR SINE MIR 85 148 -60 618 158 10 0 chr9 873963 874064 -141397380 - U6 snRNA snRNA -5 102 1 321 174 58 0 chr9 874266 874335 -141397109 - MLT1I LTR MaLR -11 398 326 1882 124 34 4 chr9 874402 874669 -141396775 - AluSx SINE Alu -15 297 23 285 287 53 0 chr9 874766 874860 -141396584 - MLT1J2 LTR MaLR -306 144 46 2296 107 3 0 chr9 875092 875391 -141396053 - AluSq SINE Alu -13 300 1 231 254 0 0 chr9 875412 875471 -141395973 - MIR SINE MIR -58 204 146 1754 161 0 62 chr9 876215 876538 -141394906 - AluJb SINE Alu -9 303 1 811 266 71 77 chr9 876556 877165 -141394279 - L1MC4a LINE L1 -1845 5963 5359 1879 152 0 23 chr9 877600 877909 -141393535 + AluJb SINE Alu 1 302 -10 444 292 127 56 chr9 877910 878468 -141392976 - L1MC5 LINE L1 -38 7923 7326 235 184 28 47 chr9 878674 878717 -141392727 - L1MC4 LINE L1 -835 7207 7165 2313 87 13 10 chr9 878717 879026 -141392418 - AluSx SINE Alu -1 311 2 235 184 28 47 chr9 879026 879089 -141392355 - L1MC4 LINE L1 -877 7165 7082 550 284 153 5 chr9 879964 880179 -141391265 + MIR SINE MIR 3 249 -13 4964 121 16 15 chr9 880404 881199 -141390245 + L1MA4A LINE L1 5507 6302 -1 331 253 40 0 chr9 882034 882133 -141389311 + MER5A DNA MER1_type 13 115 -74 426 257 48 0 chr9 882192 882297 -141389147 + MER5B DNA MER1_type 1 110 -68 1606 187 3 20 chr9 882727 883026 -141388418 - AluJo SINE Alu -18 294 1 284 241 0 0 chr9 883034 883092 -141388352 + MER5A DNA MER1_type 132 189 0 2169 103 0 48 chr9 883493 883804 -141387640 - AluSx SINE Alu -16 296 1 502 237 8 38 chr9 884415 884546 -141386898 - Charlie8 DNA MER1_type -2203 214 88 192 77 0 0 chr9 884556 884582 -141386862 + (A)n Simple_repeat Simple_repeat 1 26 0 2359 85 3 0 chr9 884704 884997 -141386447 + AluSx SINE Alu 1 294 -18 524 251 71 51 chr9 885501 885812 -141385632 + HAL1b LINE L1 658 974 -374 3419 233 40 7 chr9 885935 886823 -141384621 - L1ME3A LINE L1 -18 6152 5237 2126 266 74 17 chr9 886885 887514 -141383930 - L1ME3A LINE L1 -1121 5025 4343 2181 128 0 0 chr9 887514 887812 -141383632 + AluJb SINE Alu 1 298 -14 2126 266 74 17 chr9 887812 887953 -141383491 - L1ME3A LINE L1 -1803 4343 4211 55 0 0 0 chr9 888287 888342 -141383102 + AT_rich Low_complexity Low_complexity 1 55 0 2143 112 3 3 chr9 888342 888636 -141382808 - AluSx SINE Alu -18 294 1 1991 150 0 0 chr9 888645 888932 -141382512 - AluSx SINE Alu -25 287 1 2216 178 22 10 chr9 888942 889504 -141381940 - L1M4 LINE L1 -704 5480 4911 457 303 198 17 chr9 890640 890802 -141380642 - L2 LINE L2 -1 3271 3140 1916 112 11 4 chr9 890802 891070 -141380374 + AluSq SINE Alu 1 270 -43 457 303 198 17 chr9 891070 891371 -141380073 - L2 LINE L2 -132 3140 2709 1809 159 18 0 chr9 892376 892659 -141378785 - AluJb SINE Alu -24 288 1 223 156 67 0 chr9 892831 892876 -141378568 - L2 LINE L2 -93 3220 3173 582 281 95 33 chr9 893738 893980 -141377464 + MIR SINE MIR 6 262 0 3051 201 60 31 chr9 894120 894282 -141377162 - L1ME1 LINE L1 -126 6040 5884 2260 122 0 0 chr9 894282 894577 -141376867 - AluSx SINE Alu -17 295 1 3051 201 60 31 chr9 894577 895229 -141376215 - L1ME1 LINE L1 -282 5884 5200 234 278 204 12 chr9 895905 896067 -141375377 - MIR SINE MIR -58 204 12 2073 140 3 0 chr9 896822 897114 -141374330 + AluSx SINE Alu 1 293 -19 222 80 60 0 chr9 897987 898037 -141373407 + CT-rich Low_complexity Low_complexity 1 53 0 1702 167 14 24 chr9 898037 898325 -141373119 - AluJb SINE Alu -27 285 1 398 279 84 19 chr9 898386 898540 -141372904 - L1ME LINE L1 -345 5776 5613 687 217 24 18 chr9 898545 898711 -141372733 + MIR SINE MIR 75 241 -21 2239 117 0 7 chr9 899333 899631 -141371813 - AluSx SINE Alu -16 296 1 658 291 78 21 chr9 899973 900419 -141371025 - L1MC/D LINE L1 -328 5793 5337 231 197 13 26 chr9 900498 900574 -141370870 + CT-rich Low_complexity Low_complexity 2 76 0 861 191 33 6 chr9 902351 902534 -141368910 + MER5A DNA MER1_type 2 189 0 1564 184 28 31 chr9 902601 902955 -141368489 - L1MA9 LINE L1 -2 6310 5958 186 287 223 0 chr9 902984 903078 -141368366 - MIR SINE MIR -121 141 27 1993 112 64 14 chr9 903101 903396 -141368048 + AluSx SINE Alu 1 310 -2 530 208 69 39 chr9 903485 903615 -141367829 - MER63A DNA MER1_type -1 209 76 292 175 15 153 chr9 904971 905050 -141366394 + L1ME2 LINE L1 6038 6092 -72 1574 194 17 10 chr9 905050 905343 -141366101 + AluJb SINE Alu 1 295 -17 292 175 15 153 chr9 905343 905400 -141366044 + L1ME2 LINE L1 6092 6155 -9 222 185 19 0 chr9 905950 906004 -141365440 + MIR3 SINE MIR 153 207 -1 1932 139 33 3 chr9 906907 907209 -141364235 - AluJb SINE Alu -1 311 1 368 231 108 0 chr9 907299 907429 -141364015 - MER117 DNA MER1_type -50 147 4 295 155 0 34 chr9 907789 907861 -141363583 + Alu SINE Alu 244 302 0 1738 172 37 3 chr9 908034 908330 -141363114 - AluJb SINE Alu -6 306 1 410 310 43 27 chr9 908648 908832 -141362612 + MIR SINE MIR 11 197 -65 256 86 0 0 chr9 908883 908918 -141362526 - U2 snRNA snRNA -153 35 1 521 278 98 8 chr9 909032 909296 -141362148 + L2 LINE L2 2719 3017 -296 37 62 0 0 chr9 909362 909427 -141362017 + AT_rich Low_complexity Low_complexity 1 65 0 1879 164 3 13 chr9 912623 912935 -141358509 - AluJb SINE Alu -3 309 1 291 268 0 0 chr9 913778 913849 -141357595 - MIR SINE MIR -110 152 82 200 216 134 82 chr9 915386 915483 -141355961 - MIR3 SINE MIR -54 154 53 258 290 11 32 chr9 916382 916475 -141354969 - MIR3 SINE MIR -35 173 83 22 0 0 0 chr9 916529 916551 -141354893 + GC_rich Low_complexity Low_complexity 1 22 0 2611 32 3 10 chr9 917257 917568 -141353876 - AluY SINE Alu -2 309 1 24 0 0 0 chr9 918568 918592 -141352852 + AT_rich Low_complexity Low_complexity 1 24 0 1567 130 0 20 chr9 918683 918937 -141352507 - AluJb SINE Alu -34 278 30 210 209 0 90 chr9 919017 919084 -141352360 + G-rich Low_complexity Low_complexity 6 66 0 268 180 107 41 chr9 919463 919585 -141351859 - MIR SINE MIR -98 164 35 211 280 97 21 chr9 920857 920950 -141350494 + MIR SINE MIR 108 207 -55 218 111 0 44 chr9 921386 921431 -141350013 - L2 LINE L2 -9 3304 3262 562 255 78 29 chr9 923594 923837 -141347607 + MER112 DNA MER1_type 1 255 -1 262 235 23 102 chr9 924488 924649 -141346795 + MIR SINE MIR 42 192 -63 188 209 115 135 chr9 927181 927291 -141344153 + MIR SINE MIR 2 110 -152 2121 102 3 24 chr9 927291 927586 -141343858 - AluSg SINE Alu -2 308 20 188 209 115 135 chr9 927586 927623 -141343821 + MIR SINE MIR 110 146 -116 186 269 77 0 chr9 927765 927817 -141343627 + L2 LINE L2 3258 3313 0 2073 132 0 13 chr9 928462 928765 -141342679 - AluJo SINE Alu -13 299 1 373 288 127 23 chr9 930041 930264 -141341180 + L1MC4a LINE L1 5576 5774 -390 1736 157 19 32 chr9 930264 930577 -141340867 + AluJo SINE Alu 1 309 -3 2338 87 3 10 chr9 930579 930889 -141340555 + AluSg SINE Alu 1 308 -2 373 288 127 23 chr9 930889 930962 -141340482 + L1MC4a LINE L1 5698 5762 -402 226 180 98 49 chr9 931376 931437 -141340007 + MLT1J LTR MaLR 111 174 -337 255 278 81 52 chr9 932237 932410 -141339034 + L2 LINE L2 3112 3289 -24 2201 227 39 20 chr9 933476 933965 -141337479 - MLT1D LTR MaLR -7 498 1 2202 76 31 24 chr9 933978 934269 -141337175 - AluSx SINE Alu -19 293 1 239 200 0 0 chr9 934836 934881 -141336563 - LTR33 LTR ERVL 0 521 477 314 318 228 5 chr9 935623 935834 -141335610 - MIR SINE MIR -2 260 3 933 275 152 7 chr9 935980 936395 -141335049 + L2 LINE L2 2190 2664 -650 451 288 29 79 chr9 936411 936727 -141334717 + L2 LINE L2 2563 2862 -452 23474 29 0 0 chr9 937085 940474 -141330970 + L1PA3 LINE L1 2639 6025 -130 568 292 32 55 chr9 941015 941327 -141330117 - L1ME LINE L1 -305 5816 5512 25 51 0 0 chr9 941383 941422 -141330022 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr9 941731 941774 -141329670 + AT_rich Low_complexity Low_complexity 1 43 0 249 219 0 94 chr9 942328 942424 -141329020 + L2 LINE L2 3227 3313 0 26 64 0 0 chr9 944001 944048 -141327396 + GC_rich Low_complexity Low_complexity 1 47 0 233 270 0 0 chr9 944048 944122 -141327322 + (CGA)n Simple_repeat Simple_repeat 2 75 0 1030 133 0 0 chr9 944407 944550 -141326894 - AluSg SINE Alu -165 145 3 335 278 9 26 chr9 944748 944863 -141326581 - L1MC4a LINE L1 -1866 5942 5830 252 308 11 0 chr9 944903 944994 -141326450 - MIR3 SINE MIR -28 180 89 217 204 20 0 chr9 945168 945217 -141326227 - MIR SINE MIR -125 137 88 278 332 58 13 chr9 946470 946751 -141324693 + L3 LINE CR1 1075 1416 -161 193 296 74 25 chr9 946872 946953 -141324491 - MER5B DNA MER1_type -72 106 22 209 196 0 39 chr9 947369 947420 -141324024 - MIR3 SINE MIR -13 195 147 230 339 16 0 chr9 947425 947487 -141323957 - MIR SINE MIR -112 96 34 389 337 17 6 chr9 947972 948144 -141323300 - MER5A DNA MER1_type -9 180 7 6693 227 57 10 chr9 949121 950889 -141320555 + L1M4 LINE L1 3401 5252 -894 6310 88 15 11 chr9 950890 950950 -141320494 + L1PA8 LINE L1 5254 5312 -860 2279 102 7 0 chr9 950950 951253 -141320191 + AluSq SINE Alu 1 305 -8 6310 88 15 11 chr9 951253 952107 -141319337 + L1PA8 LINE L1 5312 6172 0 11056 158 16 19 chr9 952107 952765 -141318679 + L1P LINE L1 2828 3486 -2660 1101 63 0 7 chr9 952765 952907 -141318537 + L1PA5 LINE L1 6007 6147 -7 11056 158 16 19 chr9 952907 953124 -141318320 + L1P LINE L1 3486 3702 -2444 369 0 0 0 chr9 953124 953165 -141318279 + (CA)n Simple_repeat Simple_repeat 1 41 0 11056 158 16 19 chr9 953165 954317 -141317127 + L1P LINE L1 3702 4851 -1295 3111 94 0 5 chr9 954379 954785 -141316659 + MLT2A1 LTR ERVL 1 404 -40 302 253 101 0 chr9 954785 954884 -141316560 - L1MC4 LINE L1 -1351 6691 6583 439 201 22 39 chr9 954885 955064 -141316380 + (TA)n Simple_repeat Simple_repeat 1 176 0 186 43 0 0 chr9 955118 955141 -141316303 + (TA)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr9 955229 955253 -141316191 + (TA)n Simple_repeat Simple_repeat 1 24 0 439 37 0 0 chr9 955261 955315 -141316129 + MLT2A1 LTR ERVL 391 444 0 6590 86 3 3 chr9 955321 956620 -141314824 + L1PA13 LINE L1 4849 6144 -19 231 167 0 0 chr9 956646 956688 -141314756 + (TATG)n Simple_repeat Simple_repeat 2 43 0 180 0 0 0 chr9 957041 957061 -141314383 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 186 321 80 51 chr9 957693 957830 -141313614 + MIR3 SINE MIR 3 143 -65 897 219 11 0 chr9 958547 958730 -141312714 + MER5A DNA MER1_type 4 188 -1 353 270 122 15 chr9 960264 960414 -141311030 + MIR SINE MIR 20 186 -60 21 36 0 0 chr9 960480 960508 -141310936 + AT_rich Low_complexity Low_complexity 1 28 0 834 205 5 60 chr9 961654 961854 -141309590 + MER5A DNA MER1_type 1 189 0 1066 156 22 0 chr9 961864 962043 -141309401 - MER20 DNA MER1_type -4 215 33 253 184 88 79 chr9 962239 962353 -141309091 + L1ME4a LINE L1 6006 6120 -1 384 257 179 14 chr9 962792 962932 -141308512 + MER5A DNA MER1_type 27 189 0 324 143 0 0 chr9 963030 963079 -141308365 - MLT1D LTR MaLR 0 505 457 428 240 72 72 chr9 963080 963205 -141308239 - MLT1D LTR MaLR -380 125 1 241 231 58 133 chr9 964638 964811 -141306633 + MLT1L LTR MaLR 438 597 -18 21 0 0 0 chr9 965085 965106 -141306338 + AT_rich Low_complexity Low_complexity 1 21 0 776 230 75 0 chr9 965134 965308 -141306136 + MER5A DNA MER1_type 3 189 0 3401 145 31 22 chr9 965585 966241 -141305203 + L1MB3 LINE L1 5417 6119 -64 1564 146 4 15 chr9 966243 966504 -141304940 - Tigger2 DNA MER2_type 0 2718 2461 1163 119 0 0 chr9 966559 966727 -141304717 - Tigger2 DNA MER2_type -1974 744 577 1367 235 76 53 chr9 966735 967420 -141304024 + MER49 LTR ERV1 5 881 -41 2446 64 0 6 chr9 967420 967731 -141303713 + AluSg SINE Alu 2 310 0 2584 125 48 2 chr9 967739 968179 -141303265 - Tigger2 DNA MER2_type -2202 516 57 198 0 0 0 chr9 968593 968615 -141302829 + (A)n Simple_repeat Simple_repeat 1 22 0 290 127 0 0 chr9 969729 969784 -141301660 - L1MB8 LINE L1 -16 6162 6108 1257 199 39 51 chr9 969809 970165 -141301279 - L1MA10 LINE L1 -7 6327 5976 570 226 25 25 chr9 970159 970318 -141301126 - L1ME1 LINE L1 -70 6096 5938 * 276 276 142 0 chr9 970591 970816 -141300628 + L1MC4a LINE L1 5705 5961 -1847 2353 36 0 0 chr9 971910 972222 -141299222 + AluY SINE Alu 1 312 0 183 250 0 0 chr9 972603 972647 -141298797 - MER5A DNA MER1_type -145 44 1 2121 105 14 0 chr9 972776 973072 -141298372 - AluSq SINE Alu -13 300 1 1569 120 85 108 chr9 973214 973614 -141297830 - L1MB3 LINE L1 -2 6181 5791 180 179 0 0 chr9 973617 973656 -141297788 + (TG)n Simple_repeat Simple_repeat 2 40 0 276 235 11 49 chr9 973992 974175 -141297269 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 587 238 0 2 chr9 974175 974331 -141297113 - L1MB3 LINE L1 -378 5796 5643 23 0 0 0 chr9 974904 974927 -141296517 + AT_rich Low_complexity Low_complexity 1 23 0 269 385 0 8 chr9 975461 975591 -141295853 + LTR16B LTR ERVL 102 230 -234 1524 330 123 29 chr9 976431 977418 -141294026 + L3 LINE CR1 355 1433 -144 2320 98 3 0 chr9 977737 978032 -141293412 - AluSp SINE Alu -17 296 1 1291 159 89 63 chr9 978039 978177 -141293267 - AluJo SINE Alu -16 296 163 195 0 27 54 chr9 978177 978214 -141293230 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 15724 91 5 11 chr9 978221 981107 -141290337 - L1PA7 LINE L1 -13 6141 3268 2151 134 0 0 chr9 981107 981414 -141290030 - AluSc SINE Alu -1 308 2 15724 91 5 11 chr9 981414 981582 -141289862 - L1PA7 LINE L1 -2886 3268 3100 1291 159 89 63 chr9 981582 981705 -141289739 - AluJo SINE Alu -154 158 20 2216 123 21 39 chr9 981724 982107 -141289337 - Tigger2a DNA MER2_type -58 376 1 1881 175 46 9 chr9 982152 982477 -141288967 - MER1B DNA MER1_type 0 337 1 191 265 15 44 chr9 983384 983452 -141287992 - L2 LINE L2 0 3313 3248 1249 199 0 5 chr9 983507 983718 -141287726 + AluJo SINE Alu 84 293 -19 729 261 97 39 chr9 983924 984307 -141287137 + MLT1J LTR MaLR 6 410 -101 2338 135 103 97 chr9 984358 985018 -141286426 - MER4A LTR ERV1 0 664 1 657 281 63 28 chr9 985572 985825 -141285619 - MIR SINE MIR 0 262 1 534 132 0 0 chr9 986367 986443 -141285001 - AluS SINE Alu -13 297 222 1030 120 7 0 chr9 986443 986593 -141284851 - AluJb SINE Alu -161 151 1 2330 78 17 0 chr9 986602 986895 -141284549 - AluY SINE Alu -13 298 1 2408 85 13 3 chr9 986910 987216 -141284228 - AluY SINE Alu 0 311 3 30 0 0 78 chr9 987645 987675 -141283769 + AT_rich Low_complexity Low_complexity 1 25 -34 1999 142 0 13 chr9 987675 987977 -141283467 - AluSx SINE Alu -14 298 1 30 0 0 78 chr9 987977 988010 -141283434 + AT_rich Low_complexity Low_complexity 25 59 0 2293 94 3 10 chr9 988081 988378 -141283066 - AluSg SINE Alu -15 295 1 720 217 39 10 chr9 990442 990649 -141280795 - L1MB3 LINE L1 -3 6180 5968 304 271 141 40 chr9 990814 990974 -141280470 - L1ME LINE L1 -545 5579 5397 237 322 22 11 chr9 990977 991157 -141280287 - L1ME LINE L1 -750 5396 5215 1884 149 4 0 chr9 991369 991650 -141279794 - AluJo SINE Alu -30 282 1 751 297 119 33 chr9 991650 992740 -141278704 - L1ME LINE L1 -1089 5057 3874 669 249 94 26 chr9 992996 993229 -141278215 - MIR SINE MIR -13 249 1 1209 211 39 24 chr9 993343 993680 -141277764 + L1MC4 LINE L1 6806 7147 -895 801 234 85 60 chr9 993832 994267 -141277177 + L1MC4 LINE L1 7587 8032 -10 1268 124 119 0 chr9 994328 994529 -141276915 + AluJo SINE Alu 87 311 -1 260 62 42 0 chr9 995113 995161 -141276283 - L1MB3 LINE L1 -7 6176 6127 894 188 42 16 chr9 995170 995362 -141276082 + Tigger2 DNA MER2_type 1 197 -2521 198 217 96 36 chr9 995802 995885 -141275559 - MIR3 SINE MIR -34 174 87 228 207 69 0 chr9 997166 997224 -141274220 + U6 snRNA snRNA 1 62 -45 180 77 0 0 chr9 997458 997484 -141273960 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 25 0 0 0 chr9 997915 997940 -141273504 + AT_rich Low_complexity Low_complexity 1 25 0 207 69 0 0 chr9 998731 998760 -141272684 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 227 255 0 64 chr9 998828 998922 -141272522 + T-rich Low_complexity Low_complexity 5 92 0 203 77 0 26 chr9 999174 999213 -141272231 + (CAA)n Simple_repeat Simple_repeat 2 39 0 679 167 0 24 chr9 1001544 1001670 -141269774 - AluJb SINE Alu -22 290 168 435 153 28 0 chr9 1051690 1051762 -141219682 - AluJ/FLAM SINE Alu -238 74 1 329 299 84 24 chr9 1051762 1051929 -141219515 + L2 LINE L2 1945 2121 -1193 202 191 44 103 chr9 1051919 1051987 -141219457 + MER5B DNA MER1_type 9 72 -106 * 319 296 87 0 chr9 1051975 1052090 -141219354 + L2 LINE L2 2250 2374 -940 3930 156 21 0 chr9 1052497 1053207 -141218237 - L1MA7 LINE L1 -10 6485 5761 1345 108 36 115 chr9 1053207 1053486 -141217958 - Tigger7 DNA MER2_type -1 2486 2230 11696 166 33 18 chr9 1053520 1053756 -141217688 - L1MA7 LINE L1 -728 5767 5536 212 77 26 0 chr9 1053756 1053795 -141217649 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6528 34 12 1 chr9 1053796 1055322 -141216122 - L1PA5 LINE L1 -13 6141 4547 11696 166 33 18 chr9 1055322 1057572 -141213872 - L1MA7 LINE L1 -959 5536 3236 2535 11 0 0 chr9 1057572 1057848 -141213596 - AluYa5 SINE Alu 0 311 36 11696 166 33 18 chr9 1057848 1057955 -141213489 - L1MA7 LINE L1 -3259 3236 3132 3890 262 30 33 chr9 1058292 1059960 -141211484 - L1MA7 LINE L1 -3213 3137 1466 1789 176 7 0 chr9 1059960 1060255 -141211189 - AluSx SINE Alu -15 297 1 3890 262 30 33 chr9 1060255 1060835 -141210609 - L1MA7 LINE L1 -4884 1466 1329 2035 143 0 29 chr9 1060835 1061143 -141210301 - AluSx SINE Alu -11 301 3 3890 262 30 33 chr9 1061143 1061872 -141209572 - L1MA7 LINE L1 -5021 1329 599 3192 244 9 23 chr9 1061849 1061934 -141209510 - L1MA7 LINE L1 -5543 738 653 * 2422 70 0 19 chr9 1061934 1062246 -141209198 + AluY SINE Alu 1 306 -5 3192 244 9 23 chr9 1062246 1062907 -141208537 - L1MA7 LINE L1 -5628 653 2 200 205 0 0 chr9 1062977 1063016 -141208428 + (TG)n Simple_repeat Simple_repeat 2 40 0 241 204 0 20 chr9 1063017 1063066 -141208378 - L1MA7 LINE L1 -6091 190 143 764 309 148 26 chr9 1063095 1063623 -141207821 - L2 LINE L2 -949 2365 1774 314 309 71 52 chr9 1063677 1063887 -141207557 + L1ME LINE L1 51 264 -5855 1217 301 26 25 chr9 1064305 1065086 -141206358 + L1ME LINE L1 742 1564 -4746 3623 163 34 34 chr9 1065110 1065724 -141205720 - L1MB1 LINE L1 -225 5943 5330 2188 108 0 3 chr9 1065724 1066021 -141205423 - AluSg SINE Alu -14 296 1 3623 163 34 34 chr9 1066021 1066880 -141204564 - L1MB1 LINE L1 -838 5330 3734 20141 49 3 7 chr9 1067026 1067672 -141203772 + L1PA5 LINE L1 2562 3209 -2945 2377 81 0 0 chr9 1067672 1067968 -141203476 - AluY SINE Alu -15 296 1 20141 49 3 7 chr9 1067968 1070917 -141200527 + L1PA5 LINE L1 3209 6153 -1 254 274 67 12 chr9 1070972 1071136 -141200308 + L1M4 LINE L1 3284 3456 -2690 * 285 353 55 0 chr9 1071112 1071330 -141200114 + L1M4 LINE L1 3382 3611 -2535 1062 282 78 32 chr9 1073071 1073325 -141198119 + L1M4 LINE L1 3625 3866 -2280 2289 104 0 13 chr9 1073325 1073642 -141197802 + AluSq SINE Alu 1 313 0 1062 282 78 32 chr9 1073642 1074097 -141197347 + L1M4 LINE L1 3866 4366 -1780 428 238 37 18 chr9 1074203 1074367 -141197077 - L1M4 LINE L1 -2107 4039 3873 646 277 140 15 chr9 1074371 1074829 -141196615 + L1M4 LINE L1 4510 5024 -1122 1268 194 4 9 chr9 1075010 1075242 -141196202 + MER8 DNA MER2_type 1 231 -8 274 302 53 36 chr9 1075616 1075841 -141195603 - HAL1 LINE L1 -846 1661 1433 351 113 0 0 chr9 1076611 1076664 -141194780 + (CA)n Simple_repeat Simple_repeat 1 53 0 223 254 14 0 chr9 1077070 1077141 -141194303 + (CA)n Simple_repeat Simple_repeat 1 72 0 986 215 24 0 chr9 1077852 1078061 -141193383 - MER58A DNA MER1_type 0 224 11 354 45 0 0 chr9 1079653 1079697 -141191747 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 901 174 0 0 chr9 1079707 1079845 -141191599 - FRAM SINE Alu -38 138 1 419 292 65 53 chr9 1080946 1081343 -141190101 + MLT1J LTR MaLR 79 480 -31 388 223 10 29 chr9 1081375 1081478 -141189966 + MIR SINE MIR 86 186 -76 411 296 0 9 chr9 1081636 1081751 -141189693 + MER81 DNA DNA 1 114 0 242 310 0 0 chr9 1081759 1081830 -141189614 + MER81 DNA DNA 44 114 0 303 297 83 48 chr9 1083684 1083829 -141187615 + MIR SINE MIR 110 259 -3 234 375 75 25 chr9 1084359 1084519 -141186925 - L2 LINE L2 -222 3050 2883 306 182 0 0 chr9 1084653 1084719 -141186725 + CT-rich Low_complexity Low_complexity 1 66 0 695 162 7 0 chr9 1084884 1085026 -141186418 + CT-rich Low_complexity Low_complexity 2 144 0 300 333 8 33 chr9 1085548 1085668 -141185776 - MIR SINE MIR -134 128 12 1510 224 259 23 chr9 1085886 1086414 -141185030 + MER82 DNA MER2_type 1 653 0 392 246 272 15 chr9 1086417 1086612 -141184832 - MIR SINE MIR -10 252 8 223 332 82 0 chr9 1086617 1086718 -141184726 - MIR SINE MIR -77 131 22 309 200 66 0 chr9 1087246 1087335 -141184109 + L1MC/D LINE L1 5715 5808 -313 430 283 61 20 chr9 1087649 1087847 -141183597 - L1MDa LINE L1 -3949 2591 2386 744 261 106 11 chr9 1088032 1088381 -141183063 - L1MDa LINE L1 -4573 2148 1767 497 345 133 15 chr9 1088587 1088926 -141182518 + L1MEd LINE L1 472 850 -5269 204 202 0 36 chr9 1089628 1089712 -141181732 + GA-rich Low_complexity Low_complexity 1 81 0 270 303 18 36 chr9 1090064 1090229 -141181215 - L2 LINE L2 -224 3048 2887 282 29 0 0 chr9 1091984 1092019 -141179425 + (TG)n Simple_repeat Simple_repeat 1 35 0 272 145 290 0 chr9 1095189 1095251 -141176193 + MADE1 DNA Mariner 1 80 0 890 201 48 0 chr9 1095417 1095606 -141175838 + MER58 DNA MER1_type 4 201 -2219 2007 151 6 10 chr9 1095606 1095917 -141175527 + AluJb SINE Alu 1 310 -2 21 0 0 0 chr9 1096283 1096304 -141175140 + AT_rich Low_complexity Low_complexity 1 21 0 809 259 59 4 chr9 1096368 1096607 -141174837 - L1ME1 LINE L1 -8 6158 5907 21 0 0 0 chr9 1096823 1096844 -141174600 + AT_rich Low_complexity Low_complexity 1 21 0 4179 85 51 22 chr9 1098665 1099290 -141172154 + L1PA11 LINE L1 5529 6171 -3 216 0 0 0 chr9 1099880 1099904 -141171540 + (T)n Simple_repeat Simple_repeat 1 24 0 429 275 129 23 chr9 1100749 1100920 -141170524 - MER5A DNA MER1_type 0 189 1 323 246 32 24 chr9 1101129 1101255 -141170189 - L1ME4a LINE L1 -17 6104 5978 250 260 41 24 chr9 1101687 1101810 -141169634 - LTR67 LTR ERVL 0 557 433 635 243 55 141 chr9 1101946 1101986 -141169458 - L2 LINE L2 0 3313 3271 2477 146 50 2 chr9 1101986 1102405 -141169039 - L1PA16 LINE L1 -11 6155 5717 635 243 55 141 chr9 1102405 1102767 -141168677 - L2 LINE L2 -42 3271 2946 * 1191 223 208 29 chr9 1102754 1102798 -141168646 - L2 LINE L2 -581 2733 2698 2220 84 3 17 chr9 1102798 1103095 -141168349 + AluY SINE Alu 1 293 -18 1191 223 208 29 chr9 1103095 1103576 -141167868 - L2 LINE L2 -616 2698 2061 249 375 77 0 chr9 1103973 1104077 -141167367 + L2 LINE L2 3149 3260 -12 649 184 18 9 chr9 1104096 1104210 -141167234 - FLAM_A SINE Alu -17 116 2 1322 283 109 13 chr9 1104295 1104829 -141166615 - MLT1K LTR MaLR -2 586 2 22 35 0 0 chr9 1106308 1106337 -141165107 + AT_rich Low_complexity Low_complexity 1 29 0 359 155 0 28 chr9 1106337 1106408 -141165036 + Charlie5 DNA MER1_type 2233 2301 -311 672 142 9 9 chr9 1106417 1106530 -141164914 - L1MC1 LINE L1 -5 6328 6216 12333 95 10 10 chr9 1106530 1108375 -141163069 - L1P LINE L1 -4301 1845 1 2450 142 11 47 chr9 1108374 1108847 -141162597 - L1MC1 LINE L1 -104 6229 5774 * 267 322 47 53 chr9 1109099 1109270 -141162174 + MIR SINE MIR 20 189 -73 450 127 0 0 chr9 1109316 1109387 -141162057 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 2009 138 17 0 chr9 1109387 1109678 -141161766 - AluSx SINE Alu -16 296 1 41119 46 3 3 chr9 1110439 1113387 -141158057 - L1PA4 LINE L1 -9 6146 3200 2371 86 3 0 chr9 1113387 1113688 -141157756 + AluY SINE Alu 1 302 -9 41119 46 3 3 chr9 1113688 1116881 -141154563 - L1PA4 LINE L1 -2955 3200 3 207 292 15 0 chr9 1116931 1116996 -141154448 + L2 LINE L2 3184 3249 -64 271 274 0 0 chr9 1117463 1117547 -141153897 + MER103 DNA DNA 80 163 -3 2287 95 0 25 chr9 1117750 1118066 -141153378 + AluSx SINE Alu 1 308 -4 608 278 99 9 chr9 1118585 1118797 -141152647 - MIR SINE MIR -18 244 14 198 103 0 0 chr9 1118817 1118846 -141152598 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 230 118 0 0 chr9 1119025 1119059 -141152385 + Charlie8 DNA MER1_type 2374 2407 -10 323 333 21 0 chr9 1119226 1119322 -141152122 - L3 LINE CR1 -54 1523 1426 300 376 68 14 chr9 1119553 1119774 -141151670 - L3 LINE CR1 -480 1097 865 687 256 23 6 chr9 1120880 1121056 -141150388 + MIR SINE MIR 13 191 -71 356 266 7 65 chr9 1122774 1122928 -141148516 + L1ME4a LINE L1 5571 5715 -406 237 75 25 25 chr9 1122991 1123031 -141148413 + L1ME4a LINE L1 5725 5764 -357 301 312 27 32 chr9 1123057 1123243 -141148201 + L1ME4a LINE L1 5861 6045 -76 368 314 50 0 chr9 1124746 1124867 -141146577 - MIR3 SINE MIR -41 167 41 1917 180 0 0 chr9 1125514 1125819 -141145625 - AluJo SINE Alu -7 305 1 313 234 49 12 chr9 1126213 1126318 -141145126 - MIR SINE MIR -79 129 20 1152 153 0 0 chr9 1126563 1126739 -141144705 + L1PA16 LINE L1 5980 6155 -11 486 259 94 18 chr9 1126764 1126934 -141144510 + MIR SINE MIR 59 241 -21 262 318 116 8 chr9 1127168 1127297 -141144147 - MIR SINE MIR -71 191 49 312 320 17 10 chr9 1128053 1128225 -141143219 + GA-rich Low_complexity Low_complexity 2 293 0 653 281 69 16 chr9 1129775 1130081 -141141363 - LTR33 LTR ERVL -20 501 180 754 22 0 0 chr9 1130081 1130172 -141141272 - L1PA5 LINE L1 -1322 4824 4734 7649 51 0 23 chr9 1130172 1131517 -141139927 + L1PA5 LINE L1 4831 6154 0 580 214 115 50 chr9 1131518 1131700 -141139744 - LTR33 LTR ERVL -327 194 1 882 133 0 8 chr9 1133375 1133503 -141137941 + AluJb SINE Alu 1 127 -185 293 296 125 6 chr9 1134520 1134696 -141136748 - L1ME LINE L1 -531 5590 5394 558 108 26 25 chr9 1134924 1135115 -141136329 - L1MA4A LINE L1 -24 6279 6028 288 277 40 0 chr9 1135348 1135449 -141135995 - LTR67 LTR ERVL -2 555 451 2742 146 5 34 chr9 1135835 1136279 -141135165 - Tigger2a DNA MER2_type -2 432 2 388 297 55 25 chr9 1136358 1136769 -141134675 - L1ME LINE L1 -1445 4701 4274 25 75 0 0 chr9 1138809 1138862 -141132582 + AT_rich Low_complexity Low_complexity 1 53 0 1227 269 63 41 chr9 1140041 1140361 -141131083 - LTR33 LTR ERVL -2 519 184 195 42 0 0 chr9 1140361 1140385 -141131059 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1227 269 63 41 chr9 1140385 1140525 -141130919 - LTR33 LTR ERVL -337 184 49 1448 175 126 7 chr9 1141068 1141337 -141130107 - AluJo SINE Alu -1 301 1 477 321 134 13 chr9 1141472 1141696 -141129748 - MIR SINE MIR -1 261 11 22 0 0 0 chr9 1141807 1141829 -141129615 + AT_rich Low_complexity Low_complexity 1 22 0 1853 167 49 71 chr9 1142495 1142962 -141128482 - LTR16A1 LTR ERVL 0 457 1 1834 213 3 42 chr9 1142985 1143365 -141128079 + MLT1A1 LTR MaLR 1 365 0 227 269 30 15 chr9 1143465 1143532 -141127912 - MER112 DNA MER1_type -189 71 4 2024 123 0 7 chr9 1144228 1144544 -141126900 - AluSx SINE Alu 0 314 1 43715 34 23 1 chr9 1144594 1150615 -141120829 + L1PA2 LINE L1 1 6155 0 189 74 0 0 chr9 1150643 1150670 -141120774 + (A)n Simple_repeat Simple_repeat 1 27 0 734 279 169 24 chr9 1150673 1150804 -141120640 + L1ME3A LINE L1 4015 4126 -2020 210 91 0 0 chr9 1150804 1150837 -141120607 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 734 279 169 24 chr9 1150837 1151450 -141119994 + L1ME3A LINE L1 4126 4867 -1279 528 272 36 15 chr9 1151534 1151729 -141119715 + L1ME3A LINE L1 5749 5947 -223 273 249 85 58 chr9 1151802 1151991 -141119453 + L1ME3A LINE L1 5963 6156 -14 480 190 0 0 chr9 1154033 1154112 -141117332 - FLAM_A SINE Alu -43 99 21 658 276 117 26 chr9 1154194 1154545 -141116899 - L1ME4a LINE L1 -218 5903 5521 22 0 0 0 chr9 1154593 1154615 -141116829 + AT_rich Low_complexity Low_complexity 1 22 0 404 260 164 71 chr9 1154963 1155509 -141115935 - L1ME4a LINE L1 -34 6087 5462 1775 170 0 16 chr9 1155509 1155826 -141115618 - AluJb SINE Alu 0 312 1 404 260 164 71 chr9 1155826 1156001 -141115443 - L1ME4a LINE L1 -659 5462 5305 21 0 0 0 chr9 1156314 1156335 -141115109 + AT_rich Low_complexity Low_complexity 1 21 0 392 289 133 8 chr9 1156633 1156761 -141114683 + MLT1J LTR MaLR 9 152 -359 593 231 8 0 chr9 1156860 1156977 -141114467 + LTR16A1 LTR ERVL 3 120 -337 334 278 44 0 chr9 1157013 1157103 -141114341 + MLT1J LTR MaLR 292 385 -126 2591 187 18 66 chr9 1157374 1157533 -141113911 - LTR27 LTR ERV1 0 636 471 1961 168 60 26 chr9 1157533 1157884 -141113560 - THE1B LTR MaLR -1 363 1 2591 187 18 66 chr9 1157884 1158391 -141113053 - LTR27 LTR ERV1 -165 471 2 224 264 36 45 chr9 1158399 1158509 -141112935 + MIR SINE MIR 100 208 -54 409 296 41 21 chr9 1159004 1159208 -141112236 - ERVL LTR ERVL -1923 3562 3357 255 323 40 0 chr9 1159362 1159461 -141111983 - ERVL LTR ERVL -2584 3180 3078 1059 232 147 4 chr9 1159538 1159810 -141111634 + LTR16C LTR ERVL 79 389 -102 312 235 0 49 chr9 1159835 1159937 -141111507 - L1MC4a LINE L1 -1860 5948 5852 627 125 0 0 chr9 1159969 1160065 -141111379 - L1PA16 LINE L1 0 6166 6071 1018 166 11 6 chr9 1160130 1160311 -141111133 - L1PA15 LINE L1 -100 6065 5884 300 191 16 0 chr9 1160311 1160374 -141111070 + LTR16C LTR ERVL 428 491 0 987 310 82 43 chr9 1160390 1161566 -141109878 - ERVL LTR ERVL -2462 3023 1787 2011 136 10 3 chr9 1161641 1161935 -141109509 - AluSg SINE Alu -14 296 1 1309 180 18 9 chr9 1162623 1162845 -141108599 + MSTB1 LTR MaLR 5 228 -204 529 299 48 11 chr9 1162849 1163036 -141108408 - MIR SINE MIR -19 243 50 459 343 94 9 chr9 1163493 1163726 -141107718 + MIR SINE MIR 10 262 0 2083 130 10 0 chr9 1164627 1164926 -141106518 + AluSq SINE Alu 1 302 -11 24 32 0 0 chr9 1164989 1165020 -141106424 + AT_rich Low_complexity Low_complexity 1 31 0 2360 115 138 26 chr9 1165445 1165829 -141105615 + MSTC LTR MaLR 2 428 0 421 294 39 39 chr9 1165911 1166091 -141105353 + MLT1J LTR MaLR 1 180 -331 2850 49 0 0 chr9 1166143 1166508 -141104936 + L1PA5 LINE L1 5812 6176 0 276 202 83 58 chr9 1166598 1166751 -141104693 + MLT1J LTR MaLR 403 599 -16 2073 171 11 22 chr9 1166865 1167233 -141104211 + MLT1A1 LTR MaLR 1 364 -1 186 343 0 0 chr9 1168267 1168334 -141103110 + MIR SINE MIR 182 248 -14 365 278 28 0 chr9 1168566 1168674 -141102770 + MIR SINE MIR 3 113 -149 243 166 26 0 chr9 1168677 1168778 -141102666 - L1P5 LINE L1 -446 5705 5591 283 287 160 7 chr9 1168778 1168928 -141102516 + MIR SINE MIR 90 262 0 207 0 0 0 chr9 1169838 1169861 -141101583 + (TG)n Simple_repeat Simple_repeat 2 24 0 33 56 0 0 chr9 1169861 1169915 -141101529 + AT_rich Low_complexity Low_complexity 1 54 0 452 72 14 0 chr9 1169916 1169985 -141101459 + (TA)n Simple_repeat Simple_repeat 1 70 0 292 292 36 105 chr9 1171609 1171828 -141099616 + MIR SINE MIR 48 251 -11 391 326 62 26 chr9 1171841 1172068 -141099376 + MIR SINE MIR 18 252 -10 228 233 0 0 chr9 1172717 1172760 -141098684 + polypurine Low_complexity Low_complexity 2 44 0 485 267 2 42 chr9 1173415 1173558 -141097886 + MIR SINE MIR 53 190 -68 507 246 266 10 chr9 1175242 1175445 -141095999 + MIR SINE MIR 3 257 -5 864 221 57 12 chr9 1175815 1176059 -141095385 - L1ME2 LINE L1 -199 5965 5711 304 281 0 12 chr9 1176915 1176997 -141094447 + MER81 DNA DNA 17 97 -17 291 218 173 64 chr9 1177210 1177320 -141094124 - MIR3 SINE MIR -47 161 40 5428 142 30 25 chr9 1177392 1179088 -141092356 + L1MA4 LINE L1 4563 6281 -19 218 273 18 0 chr9 1179127 1179182 -141092262 - MER5A DNA MER1_type -98 91 36 301 275 171 31 chr9 1183356 1183510 -141087934 + MIR SINE MIR 5 193 -69 366 23 0 0 chr9 1183510 1183553 -141087891 + (TG)n Simple_repeat Simple_repeat 2 44 0 301 275 171 31 chr9 1183553 1183591 -141087853 + MIR SINE MIR 193 224 -38 241 122 24 0 chr9 1183637 1183678 -141087766 - L2 LINE L2 -4 3309 3268 425 264 86 6 chr9 1183679 1183842 -141087602 - L2 LINE L2 -1907 1407 1232 282 239 54 33 chr9 1184361 1184453 -141086991 - MLT1H LTR MaLR -16 533 433 383 311 146 0 chr9 1185237 1185388 -141086056 - L3 LINE CR1 -8 1569 1397 210 239 103 65 chr9 1186502 1186657 -141084787 - L3 LINE CR1 -381 1196 1036 296 24 0 24 chr9 1187733 1187775 -141083669 + (TA)n Simple_repeat Simple_repeat 2 42 0 764 332 118 13 chr9 1187778 1188488 -141082956 + ERVL LTR ERVL 3305 4089 -1675 283 341 90 20 chr9 1188517 1188860 -141082584 + ERVL LTR ERVL 4296 4662 -992 495 347 46 28 chr9 1188906 1189364 -141082080 + ERVL LTR ERVL 4770 5235 -529 841 251 132 30 chr9 1189667 1190070 -141081374 + LTR16A1 LTR ERVL 14 457 0 263 267 11 0 chr9 1190205 1190295 -141081149 - LTR16A1 LTR ERVL -339 118 28 257 233 0 12 chr9 1190743 1190829 -141080615 + CT-rich Low_complexity Low_complexity 2 86 0 368 300 130 34 chr9 1192610 1192838 -141078606 - MIR SINE MIR 0 262 3 2168 125 0 0 chr9 1192884 1193173 -141078271 - AluSx SINE Alu -23 289 1 224 402 39 0 chr9 1193325 1193427 -141078017 - L2 LINE L2 -16 3256 3151 215 100 0 25 chr9 1195261 1195301 -141076143 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 4608 170 6 30 chr9 1195539 1196803 -141074641 + L1MB3 LINE L1 4903 6138 -45 1226 188 62 62 chr9 1196803 1196879 -141074565 + AluJo SINE Alu 44 119 -193 180 0 0 0 chr9 1196879 1196899 -141074545 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1226 188 62 62 chr9 1196899 1197078 -141074366 + AluJo SINE Alu 118 299 -13 331 131 0 0 chr9 1197078 1197139 -141074305 + L1MB2 LINE L1 6111 6171 0 1001 237 113 47 chr9 1197941 1198447 -141072997 - L1ME4a LINE L1 -17 6104 5566 317 289 26 46 chr9 1198621 1198773 -141072671 - L1ME4a LINE L1 -786 5360 5212 1169 167 8 71 chr9 1198848 1199100 -141072344 + MER46A DNA MER2_type 1 236 0 1233 160 60 14 chr9 1199240 1199299 -141072145 - L1MA7 LINE L1 -6 6285 6230 318 26 0 0 chr9 1199299 1199338 -141072106 + (CA)n Simple_repeat Simple_repeat 2 40 0 1233 160 60 14 chr9 1199338 1199559 -141071885 - L1MA7 LINE L1 -61 6230 5992 455 265 87 99 chr9 1199988 1200157 -141071287 - HAL1 LINE L1 -1 2506 2336 2447 45 0 19 chr9 1200157 1200466 -141070978 - AluY SINE Alu -8 303 1 455 265 87 99 chr9 1200466 1200700 -141070744 - HAL1 LINE L1 -171 2336 2108 1914 195 29 43 chr9 1200863 1201355 -141070089 - HAL1 LINE L1 -1959 548 64 26 30 0 0 chr9 1201566 1201599 -141069845 + AT_rich Low_complexity Low_complexity 1 33 0 2381 90 0 0 chr9 1202321 1202622 -141068822 - AluY SINE Alu -10 301 1 433 301 78 41 chr9 1202720 1202939 -141068505 - MIR SINE MIR -16 246 20 241 183 14 28 chr9 1203356 1203427 -141068017 + GA-rich Low_complexity Low_complexity 2 71 0 258 321 71 18 chr9 1203536 1203648 -141067796 + L2 LINE L2 3196 3313 0 208 121 0 0 chr9 1204604 1204637 -141066807 + (CA)n Simple_repeat Simple_repeat 2 34 0 343 96 0 0 chr9 1206932 1206984 -141064460 + L1 LINE L1 5197 5248 -898 996 127 6 11 chr9 1207652 1207833 -141063611 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 584 230 58 40 chr9 1208355 1208529 -141062915 + MER5B DNA MER1_type 2 178 0 261 268 16 71 chr9 1209114 1209241 -141062203 - MER5B DNA MER1_type 0 178 59 554 217 118 80 chr9 1209282 1209661 -141061783 + L1MC4a LINE L1 5523 5823 -298 243 309 18 36 chr9 1209681 1209791 -141061653 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 1516 206 22 43 chr9 1210066 1210435 -141061009 + MLT1A1 LTR MaLR 3 363 -2 273 292 75 50 chr9 1210708 1210869 -141060575 + MIR SINE MIR 70 234 -28 29 78 0 0 chr9 1211502 1211566 -141059878 + AT_rich Low_complexity Low_complexity 1 64 0 1224 189 45 89 chr9 1212040 1212422 -141059022 - MLT1A1 LTR MaLR 0 365 1 694 300 27 5 chr9 1212595 1212815 -141058629 - MIR SINE MIR -13 249 25 1898 161 6 3 chr9 1212975 1213286 -141058158 - AluJb SINE Alu 0 312 1 234 237 34 0 chr9 1216015 1216074 -141055370 + MIR3 SINE MIR 97 157 -51 463 175 88 0 chr9 1216160 1216274 -141055170 - Charlie8 DNA MER1_type -2246 171 48 536 265 21 48 chr9 1216283 1216472 -141054972 + L1MEc LINE L1 36 219 -6177 1932 152 7 0 chr9 1216515 1216811 -141054633 + AluSx SINE Alu 1 298 -14 5646 147 27 6 chr9 1217012 1218910 -141052534 - L1MA8 LINE L1 -137 6154 4213 1171 280 71 32 chr9 1218985 1219581 -141051863 + L2 LINE L2 2694 3313 0 15356 51 2 1 chr9 1220444 1223156 -141048288 - L1PA8 LINE L1 -6 6166 3441 10780 83 21 1 chr9 1223156 1224746 -141046698 + L1P LINE L1 2856 4478 -1668 250 273 281 7 chr9 1224848 1224987 -141046457 - MIR SINE MIR -27 235 59 183 323 71 0 chr9 1225092 1225191 -141046253 - L3b LINE CR1 -242 1341 1236 227 299 0 52 chr9 1227330 1227407 -141044037 - L2 LINE L2 0 3313 3241 1803 150 58 0 chr9 1228985 1229278 -141042166 - AluSx SINE Alu -2 310 1 535 330 42 0 chr9 1229304 1229495 -141041949 - MIR SINE MIR -8 254 56 503 256 173 0 chr9 1230336 1230469 -141040975 + MER5A DNA MER1_type 32 187 -2 2133 127 0 0 chr9 1230944 1231227 -141040217 + AluSx SINE Alu 3 285 -27 270 308 175 21 chr9 1231569 1231712 -141039732 - MIR SINE MIR -17 245 81 432 308 83 0 chr9 1231748 1231868 -141039576 - MIR SINE MIR -62 146 17 302 325 25 44 chr9 1232880 1233040 -141038404 - MIR SINE MIR 0 262 106 487 210 70 38 chr9 1233238 1233395 -141038049 - MER112 DNA MER1_type -6 254 93 42 15 0 44 chr9 1233397 1233465 -141037979 + AT_rich Low_complexity Low_complexity 1 65 0 338 183 61 12 chr9 1233465 1233547 -141037897 - MER112 DNA MER1_type -174 86 1 272 314 97 57 chr9 1233663 1234035 -141037409 - L2 LINE L2 -412 2902 2516 470 276 37 22 chr9 1235814 1235948 -141035496 - L2 LINE L2 -1 3271 3136 195 316 76 59 chr9 1236236 1236473 -141034971 - L2 LINE L2 -485 2829 2589 259 266 141 0 chr9 1236481 1236609 -141034835 - MER117 DNA MER1_type -1 196 51 204 271 121 72 chr9 1236714 1236921 -141034523 - L2 LINE L2 -791 2523 2307 190 238 57 76 chr9 1237008 1237113 -141034331 - L2 LINE L2 -1017 2297 2195 478 206 46 69 chr9 1237984 1238523 -141032921 + L1ME1 LINE L1 5929 6099 -67 1929 148 107 3 chr9 1238137 1238502 -141032942 - MER57A LTR ERV1 0 403 1 319 152 22 196 chr9 1238502 1238619 -141032825 + L1MA10 LINE L1 6190 6326 -8 441 54 0 0 chr9 1238623 1238679 -141032765 + (CA)n Simple_repeat Simple_repeat 2 57 0 540 313 19 6 chr9 1240621 1240781 -141030663 - MIR SINE MIR -23 239 78 515 239 67 35 chr9 1240915 1241170 -141030274 + L1ME3A LINE L1 4774 5036 -1110 719 279 146 18 chr9 1241343 1241952 -141029492 + L1ME3A LINE L1 5258 5944 -226 312 304 87 36 chr9 1241997 1242135 -141029309 + L1ME3A LINE L1 5953 6097 -73 197 317 10 109 chr9 1243529 1243630 -141027814 - MIR SINE MIR -97 111 21 238 150 0 0 chr9 1243691 1243731 -141027713 - MLT1B LTR MaLR -2 388 349 889 178 28 134 chr9 1243757 1244224 -141027220 - MLT1B LTR MaLR -23 444 1 343 307 69 35 chr9 1244793 1245083 -141026361 + LTR16C LTR ERVL 192 491 0 335 302 86 17 chr9 1245170 1245286 -141026158 - L2 LINE L2 -8 3264 3141 979 248 94 46 chr9 1246488 1246923 -141024521 + MLT1C LTR MaLR 4 459 -8 400 168 0 161 chr9 1247738 1247756 -141023688 + L1M2 LINE L1 5407 5426 -865 2185 117 3 13 chr9 1247756 1248090 -141023354 + AluSx SINE Alu 1 312 0 400 168 0 161 chr9 1248090 1248116 -141023328 + L1M2 LINE L1 5426 5455 -836 1852 156 12 23 chr9 1248116 1248462 -141022982 + L1PB4 LINE L1 5815 6156 0 400 168 0 161 chr9 1248462 1248553 -141022891 + L1M2 LINE L1 5455 5521 -770 502 245 129 31 chr9 1248574 1248737 -141022707 - L2 LINE L2 0 3313 3135 191 382 83 0 chr9 1248881 1249025 -141022419 + MIR3 SINE MIR 38 193 -15 1566 228 52 29 chr9 1249183 1249668 -141021776 + MLT1D LTR MaLR 6 386 -4 303 212 71 12 chr9 1249670 1249755 -141021689 + MLT1I LTR MaLR 61 150 -259 2126 185 15 37 chr9 1249965 1250429 -141021015 - MLT2B1 LTR ERVL -64 456 3 248 281 53 35 chr9 1250434 1250548 -141020896 + MLT1I LTR MaLR 256 371 -38 248 288 91 23 chr9 1250750 1250882 -141020562 + MER103 DNA DNA 2 142 -24 891 250 29 16 chr9 1252918 1253162 -141018282 + MLT1H1 LTR MaLR 307 553 -2 192 167 0 0 chr9 1253399 1253429 -141018015 + L2 LINE L2 3233 3262 -51 731 272 83 48 chr9 1253438 1253896 -141017548 - L2 LINE L2 -117 3196 2719 673 167 233 17 chr9 1255963 1256143 -141015301 + MER20 DNA MER1_type 1 219 0 4391 155 37 34 chr9 1256144 1257034 -141014410 - MER54A LTR ERVL -1 900 8 243 61 0 0 chr9 1257091 1257124 -141014320 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 187 316 26 26 chr9 1257206 1257282 -141014162 + L2 LINE L2 2712 2787 -527 431 297 116 7 chr9 1257400 1257555 -141013889 + MIR SINE MIR 10 181 -81 182 301 86 49 chr9 1258188 1258351 -141013093 + L2 LINE L2 2841 3009 -263 247 286 163 7 chr9 1258838 1258985 -141012459 + MIR SINE MIR 93 262 0 479 307 49 13 chr9 1259742 1259967 -141011477 - Charlie8 DNA MER1_type -2184 233 1 2196 115 36 39 chr9 1260009 1260373 -141011071 + THE1B LTR MaLR 1 363 -1 274 284 7 97 chr9 1261010 1261165 -141010279 + MLT1J LTR MaLR 136 276 -235 2327 289 42 24 chr9 1261167 1262176 -141009268 - MER69B DNA AcHobo -199 1027 1 674 321 91 19 chr9 1262478 1262952 -141008492 - MLT1G1 LTR MaLR -13 582 75 196 244 0 0 chr9 1263059 1263100 -141008344 + MIR SINE MIR 216 256 -6 1761 179 3 38 chr9 1263192 1263511 -141007933 + AluJo SINE Alu 1 308 -4 264 261 43 54 chr9 1264573 1264665 -141006779 - L3 LINE CR1 -12 1565 1475 3550 265 106 35 chr9 1266713 1266877 -141004567 - L2 LINE L2 0 3313 3162 2149 163 89 0 chr9 1266877 1267095 -141004349 - MSTA LTR MaLR 0 428 231 273 57 0 0 chr9 1267095 1267130 -141004314 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2149 163 89 0 chr9 1267130 1267304 -141004140 - MSTA LTR MaLR -197 231 1 3550 265 106 35 chr9 1267304 1268807 -141002637 - L2 LINE L2 -151 3162 1518 222 37 0 0 chr9 1268854 1268881 -141002563 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 344 122 28 chr9 1269246 1269638 -141001806 + L2 LINE L2 2829 3257 -15 425 263 73 39 chr9 1269655 1269860 -141001584 + HAL1 LINE L1 1 212 -2295 2314 261 141 52 chr9 1269928 1270151 -141001293 + HAL1 LINE L1 602 804 -1703 1457 170 7 7 chr9 1270151 1270421 -141001023 - L1PA16 LINE L1 0 6166 5897 2314 261 141 52 chr9 1270421 1271933 -140999511 + HAL1 LINE L1 804 2491 -16 324 272 120 27 chr9 1273184 1273321 -140998123 - MIR3 SINE MIR -23 185 33 1076 316 74 20 chr9 1273829 1274316 -140997128 - LTR33 LTR ERVL -8 513 1 1741 216 48 11 chr9 1274392 1274744 -140996700 + MLT1A1 LTR MaLR 1 365 0 4343 145 2 3 chr9 1275377 1276013 -140995431 - MER41B LTR ERV1 0 635 1 473 151 151 0 chr9 1276117 1276223 -140995221 - MIR SINE MIR -85 177 56 268 290 107 30 chr9 1276303 1276434 -140995010 + MIR SINE MIR 117 257 -5 * 630 256 113 10 chr9 1276424 1276619 -140994825 + MIR SINE MIR 11 225 -37 1039 313 35 28 chr9 1276856 1277256 -140994188 + LTR16A LTR ERVL 26 428 -22 5611 301 70 57 chr9 1277268 1278905 -140992539 + HERV16 LTR ERVL 1 1830 -3166 742 181 7 29 chr9 1278905 1279043 -140992401 + FLAM_A SINE Alu 8 142 0 5611 301 70 57 chr9 1279043 1280319 -140991125 + HERV16 LTR ERVL 1830 3089 -1907 858 286 107 39 chr9 1280467 1281156 -140990288 + HERV16 LTR ERVL 3328 4063 -1701 891 350 68 29 chr9 1281493 1282367 -140989077 + HERV16 LTR ERVL 4419 5326 -328 1031 324 58 15 chr9 1282534 1282944 -140988500 + LTR16A LTR ERVL 23 450 0 331 338 60 25 chr9 1283270 1283471 -140987973 - MIR SINE MIR -26 236 29 1218 231 86 52 chr9 1285067 1285452 -140985992 + MER93a LTR ERV1 1 398 -4 656 225 96 28 chr9 1286479 1286657 -140984787 + MER58C DNA MER1_type 26 215 0 487 281 97 17 chr9 1286660 1286898 -140984546 + MIR SINE MIR 5 261 -1 365 254 21 14 chr9 1286920 1287062 -140984382 + (TA)n Simple_repeat Simple_repeat 1 143 0 216 0 0 0 chr9 1287164 1287188 -140984256 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 398 25 88 0 chr9 1287187 1287267 -140984177 + (TA)n Simple_repeat Simple_repeat 1 87 0 2460 76 0 0 chr9 1288673 1288975 -140982469 + AluSc SINE Alu 1 302 -7 3498 124 24 10 chr9 1288979 1289488 -140981956 - L1PA15 LINE L1 -13 6152 5637 4307 155 65 21 chr9 1289492 1290256 -140981188 - L1MA7 LINE L1 0 6291 5485 2106 122 10 0 chr9 1290256 1290551 -140980893 - AluSp SINE Alu -13 300 3 4307 155 65 21 chr9 1290551 1290629 -140980815 - L1MA7 LINE L1 -806 5485 5412 1350 152 5 9 chr9 1290700 1290910 -140980534 + AluJb SINE Alu 86 294 -18 22 0 0 0 chr9 1290915 1290937 -140980507 + AT_rich Low_complexity Low_complexity 1 22 0 243 205 0 121 chr9 1291214 1291297 -140980147 + LTR67 LTR ERVL 468 540 -17 206 268 56 28 chr9 1291835 1291906 -140979538 + L2 LINE L2 3183 3255 -17 26 0 0 0 chr9 1292660 1292686 -140978758 + AT_rich Low_complexity Low_complexity 1 26 0 30930 114 20 57 chr9 1292736 1299139 -140972305 + L1PA8 LINE L1 12 6166 -6 1551 191 150 24 chr9 1299669 1300082 -140971362 - MLT1C LTR MaLR 0 467 3 319 308 51 51 chr9 1300526 1300682 -140970762 + MER5A DNA MER1_type 33 188 -1 5549 195 38 1 chr9 1302111 1303114 -140968330 - MER45B DNA AcHobo 0 1040 1 227 313 88 0 chr9 1303232 1303312 -140968132 + L2 LINE L2 3006 3092 -221 686 211 0 0 chr9 1303358 1303481 -140967963 - MER5A DNA MER1_type -66 123 1 359 321 60 28 chr9 1303481 1303694 -140967750 + L2 LINE L2 3094 3313 0 1771 191 38 24 chr9 1304184 1304556 -140966888 - MLT1B LTR MaLR -6 384 8 204 314 0 29 chr9 1304562 1304632 -140966812 - MER5A DNA MER1_type -103 86 19 221 56 0 28 chr9 1306935 1306971 -140964473 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 16372 31 1 6 chr9 1306971 1307744 -140963700 - L1PA3 LINE L1 -24 6131 5356 2892 10 0 0 chr9 1307744 1308054 -140963390 - AluYa5 SINE Alu -1 310 1 16372 31 1 6 chr9 1308054 1309977 -140961467 - L1PA3 LINE L1 -799 5356 3441 4538 37 0 3 chr9 1309968 1310535 -140960909 + L1PA3 LINE L1 2848 3412 -2734 * 327 322 49 63 chr9 1310777 1310920 -140960524 - L2 LINE L2 -3 3269 3129 1213 122 0 0 chr9 1311922 1312086 -140959358 + AluSg/x SINE Alu 133 296 -16 250 200 57 43 chr9 1312303 1312373 -140959071 - MIR SINE MIR -9 253 183 236 237 158 26 chr9 1312471 1312585 -140958859 + LTR33 LTR ERVL 116 244 -277 775 259 138 50 chr9 1312756 1313076 -140958368 - MLT1J LTR MaLR -102 409 62 318 276 150 8 chr9 1313162 1313289 -140958155 - MIR SINE MIR -93 169 25 260 325 43 17 chr9 1313588 1313705 -140957739 + MIR SINE MIR 16 135 -73 221 286 25 99 chr9 1315642 1315803 -140955641 + L3 LINE CR1 1139 1287 -290 199 313 71 85 chr9 1315799 1316080 -140955364 + L2 LINE L2 3023 3299 -14 * 22 0 0 0 chr9 1318164 1318186 -140953258 + AT_rich Low_complexity Low_complexity 1 22 0 331 320 67 5 chr9 1319516 1319710 -140951734 - L1MEd LINE L1 -4915 1204 999 813 164 15 0 chr9 1319717 1319851 -140951593 - FRAM SINE Alu -3 173 38 284 352 141 12 chr9 1321002 1321258 -140950186 + L2 LINE L2 2982 3270 -2 7300 40 28 0 chr9 1321544 1322857 -140948587 - L1PA4 LINE L1 0 6155 4824 12067 72 15 0 chr9 1322857 1324493 -140946951 - L1P LINE L1 -4485 1661 1 338 245 71 0 chr9 1325245 1325343 -140946101 - MIR3 SINE MIR -6 202 98 43 47 0 0 chr9 1326486 1326550 -140944894 + AT_rich Low_complexity Low_complexity 1 64 0 327 270 155 34 chr9 1327022 1327170 -140944274 + MIR SINE MIR 90 255 -7 246 182 0 0 chr9 1328434 1328478 -140942966 - MER66B LTR ERV1 -142 344 301 1885 251 45 38 chr9 1329879 1330303 -140941141 - HsTC2a DNA Tc2 -1157 743 310 1668 187 33 3 chr9 1330303 1330603 -140940841 - AluJo SINE Alu -3 309 1 1885 251 45 38 chr9 1330603 1330890 -140940554 - HsTC2a DNA Tc2 -1590 310 27 262 299 46 0 chr9 1330931 1331018 -140940426 - L2 LINE L2 -231 3041 2951 326 340 70 22 chr9 1331703 1331888 -140939556 - L2 LINE L2 -406 2908 2715 2121 125 0 0 chr9 1332358 1332654 -140938790 + AluSx SINE Alu 1 296 -16 2110 126 3 0 chr9 1332865 1333166 -140938278 - AluSc SINE Alu -7 302 1 779 249 120 34 chr9 1333275 1333508 -140937936 - MIR SINE MIR -1 261 9 187 31 62 0 chr9 1335334 1335366 -140936078 + A-rich Low_complexity Low_complexity 2 35 0 495 311 119 11 chr9 1335476 1335653 -140935791 + MIR SINE MIR 23 218 -44 2085 128 0 13 chr9 1336463 1336767 -140934677 - AluSx SINE Alu -10 302 3 2364 101 3 0 chr9 1336908 1337216 -140934228 + AluSc SINE Alu 1 309 0 530 277 42 45 chr9 1337797 1338086 -140933358 + Charlie7 DNA MER1_type 1245 1532 -1080 1000 245 61 114 chr9 1338639 1338779 -140932665 - LTR16C LTR ERVL -2 489 343 2255 98 3 0 chr9 1338779 1339075 -140932369 + AluSx SINE Alu 1 297 -15 1000 245 61 114 chr9 1339075 1339423 -140932021 - LTR16C LTR ERVL -148 343 27 978 304 122 29 chr9 1339757 1340240 -140931204 + MLT1G1 LTR MaLR 1 528 -67 417 177 124 9 chr9 1340369 1340482 -140930962 + L1MD3 LINE L1 7670 7795 -200 413 352 82 15 chr9 1340720 1340916 -140930528 - MIR SINE MIR -52 210 2 225 224 40 7 chr9 1341104 1341259 -140930185 + (TA)n Simple_repeat Simple_repeat 1 160 0 2105 189 88 24 chr9 1341397 1341951 -140929493 - L1MD3 LINE L1 -10 7985 7396 409 189 14 0 chr9 1341951 1342025 -140929419 - MLT1F1 LTR MaLR -457 110 36 2009 138 3 3 chr9 1342391 1342688 -140928756 - AluJb SINE Alu -15 297 1 236 223 53 0 chr9 1342759 1342853 -140928591 + (TA)n Simple_repeat Simple_repeat 1 99 0 465 311 53 24 chr9 1342881 1343090 -140928354 - MIR SINE MIR -1 261 47 2705 94 13 5 chr9 1343390 1343762 -140927682 - THE1C LTR MaLR 0 375 1 465 62 0 0 chr9 1344020 1344085 -140927359 + (GA)n Simple_repeat Simple_repeat 2 66 0 224 364 91 8 chr9 1346038 1346170 -140925274 + MIR3 SINE MIR 60 202 -6 203 286 76 59 chr9 1347458 1347577 -140923867 - L3 LINE CR1 -31 1546 1426 432 274 35 30 chr9 1347604 1347805 -140923639 - Charlie8 DNA MER1_type -9 2408 2207 913 239 85 96 chr9 1347851 1348299 -140923145 - Charlie8 DNA MER1_type -1973 444 2 1181 206 0 26 chr9 1348309 1348537 -140922907 + MER58A DNA MER1_type 2 223 -1 262 267 13 13 chr9 1348573 1348648 -140922796 - L3 LINE CR1 -180 1397 1323 612 327 88 22 chr9 1349042 1349494 -140921950 + L2 LINE L2 2832 3313 0 351 277 119 0 chr9 1349850 1349951 -140921493 - MIR SINE MIR -62 146 34 6506 83 3 28 chr9 1350058 1350875 -140920569 - L1PA10 LINE L1 0 6168 5332 2274 103 0 3 chr9 1350875 1351175 -140920269 - AluY SINE Alu -12 299 1 6506 83 3 28 chr9 1351175 1352278 -140919166 - L1PA10 LINE L1 -836 5332 4284 1117 154 18 0 chr9 1352285 1352454 -140918990 + AluSg/x SINE Alu 132 303 -9 909 225 22 13 chr9 1352457 1352688 -140918756 + L1ME1 LINE L1 5891 6123 -43 202 319 26 73 chr9 1352757 1352949 -140918495 - MIR SINE MIR -57 205 19 741 273 80 8 chr9 1353060 1353298 -140918146 - MIR SINE MIR 0 262 8 831 249 131 24 chr9 1353999 1354328 -140917116 - L2 LINE L2 -1 3312 2949 650 378 114 0 chr9 1354475 1354869 -140916575 - L3 LINE CR1 -1104 473 35 332 285 115 6 chr9 1354953 1355118 -140916326 - L1ME4a LINE L1 -4 6117 5935 266 247 55 0 chr9 1356019 1356092 -140915352 + L2 LINE L2 3197 3273 -40 1038 315 57 25 chr9 1356136 1356612 -140914832 - L2 LINE L2 0 3313 2823 980 235 111 60 chr9 1356609 1357022 -140914422 - L2 LINE L2 -876 2438 2005 * 241 313 107 0 chr9 1357797 1357909 -140913535 - MIR SINE MIR -70 192 69 239 222 0 0 chr9 1358582 1358645 -140912799 - LTR66 LTR ERVL -149 461 399 186 43 0 0 chr9 1358653 1358676 -140912768 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 27 29 0 0 chr9 1359407 1359441 -140912003 + AT_rich Low_complexity Low_complexity 1 34 0 351 362 74 23 chr9 1360262 1360746 -140910698 - L2 LINE L2 -914 2400 1892 204 367 22 11 chr9 1361081 1361171 -140910273 + L2 LINE L2 3168 3258 -14 260 333 55 56 chr9 1361211 1361412 -140910032 - MIR SINE MIR -5 203 1 468 286 64 71 chr9 1362105 1362388 -140909056 + L2 LINE L2 2992 3272 0 470 287 6 43 chr9 1362505 1362669 -140908775 - MIR SINE MIR -40 222 65 296 188 14 0 chr9 1362748 1362817 -140908627 + CT-rich Low_complexity Low_complexity 4 73 0 262 306 41 10 chr9 1362849 1362947 -140908497 + MIR SINE MIR 54 154 -108 424 137 1 35 chr9 1363035 1363124 -140908320 - L1MC3 LINE L1 -15 7770 6238 508 261 113 54 chr9 1363127 1363330 -140908114 - MIR SINE MIR -46 216 2 1577 201 35 32 chr9 1364537 1364910 -140906534 + MLT1A2 LTR MaLR 1 374 0 21 57 0 0 chr9 1366699 1366734 -140904710 + AT_rich Low_complexity Low_complexity 1 35 0 824 295 66 25 chr9 1366824 1367503 -140903941 + HAL1b LINE L1 89 795 -553 319 212 26 26 chr9 1367580 1367693 -140903751 - HAL1b LINE L1 -341 1007 895 1310 210 95 20 chr9 1367702 1368092 -140903352 - Charlie4a DNA MER1_type -63 445 27 1449 149 74 45 chr9 1370075 1370384 -140901060 + MLT2D LTR ERVL 73 534 -20 414 0 0 0 chr9 1370397 1370443 -140901001 + (CA)n Simple_repeat Simple_repeat 1 46 0 728 282 102 50 chr9 1370744 1371262 -140900182 + L2 LINE L2 527 1071 -2243 889 199 22 0 chr9 1371782 1371960 -140899484 - MER3 DNA MER1_type -19 190 9 767 196 136 11 chr9 1371960 1372144 -140899300 + MER58C DNA MER1_type 1 207 -8 213 379 70 9 chr9 1372516 1372730 -140898714 - L2 LINE L2 -234 3038 2812 201 39 0 0 chr9 1374795 1374821 -140896623 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 3071 166 35 35 chr9 1374822 1375448 -140895996 - MER73 LTR ERVL -18 626 1 3613 119 11 0 chr9 1375620 1376158 -140895286 - L1PA13 LINE L1 -56 6107 5564 2583 32 0 10 chr9 1376424 1376737 -140894707 + AluY SINE Alu 1 310 -1 303 272 174 0 chr9 1376827 1376919 -140894525 + MIR SINE MIR 126 233 -29 216 261 0 46 chr9 1377128 1377193 -140894251 + MIR SINE MIR 157 218 -44 10298 183 48 18 chr9 1377521 1380106 -140891338 - L1MA4A LINE L1 -5 6161 3654 1083 45 0 0 chr9 1380106 1380238 -140891206 - L1PA3 LINE L1 -3 6152 6021 10298 183 48 18 chr9 1380238 1380446 -140890998 - L1MA4A LINE L1 -2512 3654 3454 2006 118 37 0 chr9 1380446 1380742 -140890702 - AluSx SINE Alu -5 307 1 10298 183 48 18 chr9 1380742 1381153 -140890291 - L1MA4A LINE L1 -2712 3454 2849 2184 238 70 57 chr9 1381180 1382320 -140889124 - L1ME LINE L1 -369 5866 4676 279 100 0 0 chr9 1382320 1382360 -140889084 + U5 snRNA snRNA 3 42 -74 2184 238 70 57 chr9 1382360 1382595 -140888849 - L1ME LINE L1 -1559 4676 4446 4690 220 72 32 chr9 1382608 1384341 -140887103 - L1 LINE L1 -2659 4906 3100 2854 272 42 11 chr9 1384353 1385398 -140886046 - L1ME LINE L1 -1802 4413 3337 460 155 0 21 chr9 1386007 1386104 -140885340 - L1MA10 LINE L1 0 6334 6240 268 185 77 0 chr9 1386112 1386177 -140885267 - L1P LINE L1 -2890 3256 3187 1667 248 83 17 chr9 1386190 1386939 -140884505 - L1ME LINE L1 -3143 3072 2275 665 167 32 24 chr9 1386966 1387092 -140884352 + FLAM_C SINE Alu 10 136 -7 2285 94 0 0 chr9 1387094 1387380 -140884064 + AluSp SINE Alu 1 286 -27 1936 83 0 0 chr9 1387380 1387644 -140883800 - THE1B-int LTR MaLR -1316 264 1 2014 132 79 15 chr9 1387644 1387986 -140883458 - THE1B LTR MaLR 0 364 1 480 272 230 25 chr9 1388084 1388585 -140882859 - L1ME LINE L1 -4925 1471 1074 1912 137 20 3 chr9 1388585 1388877 -140882567 - AluSx SINE Alu -15 297 1 480 272 230 25 chr9 1388877 1389091 -140882353 - L1ME LINE L1 -5322 1074 609 1802 211 87 27 chr9 1389237 1389791 -140881653 + L1MC4 LINE L1 7443 8029 -13 346 299 35 62 chr9 1391245 1391389 -140880055 - MIR SINE MIR -108 154 15 721 330 83 29 chr9 1391460 1391942 -140879502 - L2 LINE L2 -2 3311 2804 239 211 0 19 chr9 1391991 1392043 -140879401 + L2 LINE L2 2715 2765 -549 253 364 76 0 chr9 1392616 1392734 -140878710 + L2 LINE L2 3184 3310 -3 199 234 0 117 chr9 1392743 1392820 -140878624 + MIR SINE MIR 58 125 -83 612 283 31 22 chr9 1392891 1393117 -140878327 - MIR SINE MIR -17 245 18 2226 90 6 40 chr9 1393169 1393531 -140877913 - AluY SINE Alu 0 351 1 4276 178 79 13 chr9 1393629 1394896 -140876548 - L1MA8 LINE L1 -4 6287 4936 2462 136 45 12 chr9 1395894 1396312 -140875132 + MSTB1 LTR MaLR 1 432 0 221 344 0 0 chr9 1396363 1396427 -140875017 - MIR SINE MIR -60 148 85 251 222 19 0 chr9 1396499 1396609 -140874835 + CT-rich Low_complexity Low_complexity 1 112 0 210 147 13 53 chr9 1396642 1396717 -140874727 + CT-rich Low_complexity Low_complexity 2 73 0 27 73 0 0 chr9 1396960 1397015 -140874429 + AT_rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr9 1397063 1397094 -140874350 + AT_rich Low_complexity Low_complexity 1 31 0 1253 124 21 5 chr9 1397297 1397491 -140873953 - L1PA13 LINE L1 -58 6105 5909 1386 247 92 13 chr9 1397535 1398135 -140873309 + MER114 LTR ERV 1 647 -1 598 229 52 60 chr9 1398426 1398675 -140872769 - L1MD2 LINE L1 -17 6342 6096 1196 221 56 21 chr9 1398676 1399007 -140872437 - Tigger7 DNA MER2_type 0 2491 2 1621 246 78 32 chr9 1399008 1399505 -140871939 - L1MD2 LINE L1 -263 6096 5577 1127 233 31 24 chr9 1399708 1399996 -140871448 - L1MD2 LINE L1 -651 5591 5302 2121 50 28 7 chr9 1399998 1400280 -140871164 - L1PA4 LINE L1 0 6155 5868 559 0 15 0 chr9 1400280 1400346 -140871098 + L1PA4 LINE L1 5797 5863 -291 1758 259 56 17 chr9 1400351 1401014 -140870430 - L1MD2 LINE L1 -842 5304 4616 3349 191 59 76 chr9 1401042 1402100 -140869344 - L1MB8 LINE L1 0 6178 5115 183 42 0 0 chr9 1402100 1402124 -140869320 + (TTG)n Simple_repeat Simple_repeat 3 26 0 3349 191 59 76 chr9 1402124 1402179 -140869265 - L1MB8 LINE L1 -1063 5115 5061 * 3382 200 35 15 chr9 1402175 1403364 -140868080 + L1MB5 LINE L1 4699 5953 -225 4357 152 53 13 chr9 1403364 1404158 -140867286 + LTR1B LTR ERV1 1 826 0 3382 200 35 15 chr9 1404158 1404370 -140867074 + L1MB5 LINE L1 5953 6159 -19 855 345 69 35 chr9 1405186 1405734 -140865710 - L3 LINE CR1 -1 1576 1010 386 325 24 16 chr9 1405756 1405879 -140865565 + L2 LINE L2 3141 3264 -8 181 347 0 14 chr9 1406392 1406464 -140864980 - MIR SINE MIR -118 90 20 1929 277 43 5 chr9 1408267 1408852 -140862592 - L1ME3A LINE L1 -23 6147 5541 1932 128 11 3 chr9 1409175 1409457 -140861987 + AluSx SINE Alu 4 287 -25 201 268 0 0 chr9 1409750 1409791 -140861653 - L2 LINE L2 -14 3258 3218 482 239 127 0 chr9 1411098 1411232 -140860212 + MER69 DNA AcHobo 6 156 -1070 1342 99 16 5 chr9 1411254 1411446 -140859998 - AluSc SINE Alu -12 297 104 230 304 64 60 chr9 1411480 1411730 -140859714 - L2 LINE L2 -205 3067 2817 950 88 22 15 chr9 1413331 1413468 -140857976 + MER85 DNA T2_type 1 138 -1 1726 168 42 3 chr9 1413496 1413782 -140857662 - MER50-int LTR ERV1 -6902 303 7 3891 129 32 71 chr9 1413782 1414533 -140856911 - MER50 LTR ERV1 -12 722 1 542 252 60 33 chr9 1414709 1414860 -140856584 + MIR SINE MIR 3 157 -105 21 36 0 0 chr9 1414928 1414956 -140856488 + AT_rich Low_complexity Low_complexity 1 28 0 775 195 15 135 chr9 1415021 1415355 -140856089 - TAR1 Satellite telomeric -1815 296 3 * 1459 186 49 34 chr9 1415150 1415500 -140855944 - LTR60 LTR ERV1 -3 583 229 709 169 83 156 chr9 1415500 1415801 -140855643 - LTR60 LTR ERV1 -307 279 1 792 142 0 8 chr9 1416466 1416586 -140854858 + THE1C LTR MaLR 1 119 -256 * 1049 82 0 0 chr9 1416581 1416715 -140854729 + THE1C LTR MaLR 242 375 0 1693 239 69 40 chr9 1418123 1418824 -140852620 - MER20B DNA MER1_type -12 771 24 1140 252 145 24 chr9 1418824 1419237 -140852207 - LTR16B LTR ERVL 0 464 2 3906 135 64 70 chr9 1420328 1421112 -140850332 + LTR1 LTR ERV1 7 785 0 332 234 58 88 chr9 1422465 1422602 -140848842 + L2 LINE L2 3122 3254 -18 650 329 82 47 chr9 1423031 1423390 -140848054 - MLT1K LTR MaLR -17 571 185 1548 155 59 98 chr9 1423390 1423796 -140847648 + MLT1B LTR MaLR 1 390 0 650 329 82 47 chr9 1423796 1423971 -140847473 - MLT1K LTR MaLR -403 185 18 2996 141 22 59 chr9 1424565 1424796 -140846648 + MER4B LTR ERV1 1 239 -371 1103 122 168 0 chr9 1424796 1424992 -140846452 + MER30 DNA MER1_type 1 229 -1 2996 141 22 59 chr9 1424992 1425356 -140846088 + MER4B LTR ERV1 239 574 -36 232 296 61 10 chr9 1425558 1425656 -140845788 + LTR33 LTR ERVL 112 214 -307 561 266 44 25 chr9 1425710 1425913 -140845531 + LTR33 LTR ERVL 308 514 -7 477 246 10 74 chr9 1426024 1426227 -140845217 + MIR SINE MIR 63 252 -10 938 303 92 10 chr9 1426273 1426673 -140844771 - LTR16A LTR ERVL 0 450 18 1702 310 63 31 chr9 1426992 1428029 -140843415 - HERV16 LTR ERVL -300 5026 4066 507 342 38 14 chr9 1428365 1428746 -140842698 - HERV16 LTR ERVL -2060 3704 3288 1096 172 5 15 chr9 1479486 1479689 -140791755 + ERVL-B2 LTR ERVL 4141 4341 -1423 308 102 0 17 chr9 1479687 1479746 -140791698 + ERVL-B2 LTR ERVL 5699 5756 -8 * 2277 198 4 26 chr9 1479746 1480215 -140791229 + MLT2B2 LTR ERVL 9 467 -48 244 182 18 36 chr9 1480215 1480270 -140791174 + (CCTA)n Simple_repeat Simple_repeat 4 57 0 4199 189 40 9 chr9 1480624 1481974 -140789470 - L1MB5 LINE L1 0 6174 4789 540 273 68 18 chr9 1483675 1483854 -140787590 + MIR SINE MIR 20 211 -51 28 48 0 0 chr9 1484303 1484345 -140787099 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr9 1484474 1484497 -140786947 + AT_rich Low_complexity Low_complexity 1 23 0 197 211 18 0 chr9 1484658 1484715 -140786729 + (CA)n Simple_repeat Simple_repeat 2 59 0 215 227 0 0 chr9 1484732 1484776 -140786668 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 898 226 19 33 chr9 1484776 1484988 -140786456 + MER63A DNA MER1_type 2 210 0 788 93 0 0 chr9 1485032 1485139 -140786305 - MER4E LTR ERV1 0 766 660 620 111 0 0 chr9 1485137 1485226 -140786218 - MER4E LTR ERV1 -562 217 129 809 233 38 38 chr9 1485226 1485518 -140785926 + LTR13 LTR ERVK 1 292 -715 495 245 1 2 chr9 1485523 1485667 -140785777 - L1MA10 LINE L1 -23 6143 6003 288 301 76 51 chr9 1486626 1486809 -140784635 - MIR SINE MIR -42 220 37 6364 168 27 7 chr9 1487870 1490068 -140781376 - L1PB3 LINE L1 -1 6153 3911 237 322 26 0 chr9 1490734 1490849 -140780595 + LTR40c LTR ERVL 171 288 -177 815 122 0 0 chr9 1490884 1491007 -140780437 - MLT2A2 LTR ERVL -30 423 301 41015 48 4 1 chr9 1491568 1497702 -140773742 + L1PA4 LINE L1 4 6155 0 302 300 100 19 chr9 1497849 1498009 -140773435 + L1ME4a LINE L1 5255 5427 -932 514 302 56 28 chr9 1498085 1498443 -140773001 + L1ME4a LINE L1 5566 5933 -188 759 195 7 7 chr9 1498797 1498946 -140772498 + MER106B DNA MER1_type 7 155 -904 4624 178 30 51 chr9 1498975 1499135 -140772309 - L1MA9 LINE L1 0 6548 6386 1720 99 114 33 chr9 1499135 1499408 -140772036 - AluSg SINE Alu -15 295 1 4624 178 30 51 chr9 1499408 1501420 -140770024 - L1MA9 LINE L1 -162 6386 4425 905 217 54 27 chr9 1501601 1502134 -140769310 - L1MA9 LINE L1 -4177 2206 1146 40511 38 21 1 chr9 1502152 1508181 -140763263 - L1PA3 LINE L1 -1 6154 3 2335 257 46 33 chr9 1508181 1509497 -140761947 - L1M3c LINE L1 -4739 2298 958 1359 193 0 7 chr9 1509497 1509771 -140761673 - L1M3c LINE L1 -6758 272 1 24 77 0 0 chr9 1509783 1509835 -140761609 + AT_rich Low_complexity Low_complexity 1 52 0 240 100 0 0 chr9 1510252 1510292 -140761152 + (CA)n Simple_repeat Simple_repeat 2 41 0 739 223 81 12 chr9 1511457 1511584 -140759860 - L1MD3 LINE L1 -2 7993 7876 2090 141 0 0 chr9 1511584 1511888 -140759556 + AluSx SINE Alu 1 304 -8 739 223 81 12 chr9 1511888 1512007 -140759437 - L1MD3 LINE L1 -119 7876 7730 462 303 8 8 chr9 1512306 1512428 -140759016 - MIR3 SINE MIR -29 179 58 236 170 19 0 chr9 1512491 1512544 -140758900 + (TA)n Simple_repeat Simple_repeat 2 55 0 314 341 8 38 chr9 1513432 1513564 -140757880 + MIR SINE MIR 8 135 -73 498 228 128 13 chr9 1513990 1514139 -140757305 + MLT1D LTR MaLR 1 166 -339 372 174 76 0 chr9 1514152 1514244 -140757200 + MLT1D LTR MaLR 407 505 0 325 325 118 14 chr9 1514549 1514761 -140756683 + MIR SINE MIR 14 247 -15 262 316 53 0 chr9 1514875 1514951 -140756493 - L2 LINE L2 -35 3278 3199 2276 101 29 9 chr9 1515681 1516029 -140755415 - L1PA7 LINE L1 -1 6153 5799 1157 266 91 54 chr9 1516072 1516587 -140754857 - L1M4 LINE L1 -5856 686 153 * 25930 50 15 1 chr9 1516585 1520843 -140750601 - L1PA5 LINE L1 0 6154 1834 349 205 13 0 chr9 1520943 1521021 -140750423 + L1 LINE L1 4138 4216 -1930 1324 183 9 68 chr9 1521044 1521367 -140750077 - MLT2A2 LTR ERVL -149 304 1 230 277 42 42 chr9 1521384 1521503 -140749941 + LTR40b LTR ERVL 305 423 -39 238 154 77 43 chr9 1522351 1522468 -140748976 + (TTAA)n Simple_repeat Simple_repeat 1 121 0 181 330 75 32 chr9 1522481 1522575 -140748869 - L2 LINE L2 -17 3255 3158 392 332 108 56 chr9 1522738 1523006 -140748438 + L2 LINE L2 2987 3268 -4 2480 211 46 48 chr9 1523104 1523938 -140747506 + L1ME1 LINE L1 5254 6243 -91 201 154 0 0 chr9 1523949 1523988 -140747456 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 86 0 0 chr9 1524746 1524816 -140746628 + AT_rich Low_complexity Low_complexity 1 70 0 207 100 0 0 chr9 1525030 1525060 -140746384 + (TG)n Simple_repeat Simple_repeat 1 30 0 266 296 0 0 chr9 1525060 1525158 -140746286 + GA-rich Low_complexity Low_complexity 2 99 0 467 360 7 7 chr9 1525989 1526142 -140745302 + MIR SINE MIR 33 185 -77 1194 131 23 0 chr9 1526786 1527048 -140744396 - L1MA10 LINE L1 -568 5766 5420 2527 184 19 25 chr9 1527048 1527614 -140743830 + L1MA10 LINE L1 5762 6324 -10 224 240 53 27 chr9 1527814 1527889 -140743555 - MIR SINE MIR -30 232 156 433 336 159 17 chr9 1527950 1528366 -140743078 - L2 LINE L2 0 3313 2839 758 263 56 117 chr9 1529001 1529538 -140741906 + LTR33 LTR ERVL 3 506 -15 398 236 154 0 chr9 1529620 1529730 -140741714 - MIR SINE MIR -99 163 37 1917 275 91 15 chr9 1530515 1531433 -140740011 - L1ME3A LINE L1 -5 6165 5175 376 183 238 16 chr9 1531578 1531704 -140739740 + MER21B LTR ERV1 662 815 -48 560 186 180 0 chr9 1531766 1531927 -140739517 + L1MC5 LINE L1 7712 7901 -60 481 335 17 30 chr9 1531945 1532181 -140739263 - L2 LINE L2 -1480 1834 1602 732 292 83 74 chr9 1532207 1532490 -140738954 - L2 LINE L2 -340 2974 2695 417 20 0 0 chr9 1532490 1532540 -140738904 + (TG)n Simple_repeat Simple_repeat 2 51 0 732 292 83 74 chr9 1532540 1532666 -140738778 - L2 LINE L2 -619 2695 2558 1583 249 46 20 chr9 1532666 1533119 -140738325 + MLT1C LTR MaLR 1 465 -2 732 292 83 74 chr9 1533119 1533153 -140738291 - L2 LINE L2 -756 2558 2526 58 102 0 0 chr9 1533153 1533358 -140738086 + AT_rich Low_complexity Low_complexity 1 205 0 403 267 91 91 chr9 1533488 1533806 -140737638 + L1ME4a LINE L1 4669 4986 -1160 42951 48 4 1 chr9 1533912 1540046 -140731398 + L1PA4 LINE L1 4 6155 0 228 300 9 9 chr9 1540243 1540353 -140731091 + L1P LINE L1 5318 5427 -724 597 304 50 22 chr9 1540429 1540787 -140730657 + L1ME4a LINE L1 5566 5933 -188 810 195 7 7 chr9 1541141 1541290 -140730154 + MER106B DNA MER1_type 7 155 -904 4951 178 30 51 chr9 1541319 1541479 -140729965 - L1MA9 LINE L1 0 6548 6386 1704 99 114 33 chr9 1541479 1541752 -140729692 - AluSg SINE Alu -15 295 1 4951 178 30 51 chr9 1541752 1543764 -140727680 - L1MA9 LINE L1 -162 6386 4425 972 227 66 32 chr9 1543752 1544478 -140726966 - L1MA9 LINE L1 -4177 2206 1146 * 40220 63 12 5 chr9 1544496 1550595 -140720849 - L1PA2 LINE L1 -1 6154 11 490 256 17 59 chr9 1550615 1550848 -140720596 - L1ME LINE L1 -690 5480 5256 314 304 81 40 chr9 1550857 1551005 -140720439 + MLT1D LTR MaLR 3 156 -349 1441 240 58 0 chr9 1551033 1551467 -140719977 + L1MB5 LINE L1 4114 4572 -1574 4433 179 21 26 chr9 1551477 1552383 -140719061 + L1MB5 LINE L1 5254 6154 -20 478 285 60 35 chr9 1552446 1552646 -140718798 - MLT1J2 LTR MaLR -241 209 5 242 297 66 22 chr9 1552649 1552740 -140718704 + MER5A DNA MER1_type 93 187 -2 359 21 21 0 chr9 1553709 1553757 -140717687 + (CA)n Simple_repeat Simple_repeat 2 50 0 3611 208 49 76 chr9 1553804 1553896 -140717548 + L1MB8 LINE L1 4021 4114 -2032 3625 72 4 6 chr9 1553896 1554383 -140717061 - L1PA8 LINE L1 -3 6169 5684 3611 208 49 76 chr9 1554383 1555587 -140715857 + L1MB8 LINE L1 4114 5282 -864 23 78 0 0 chr9 1555588 1555639 -140715805 + AT_rich Low_complexity Low_complexity 1 51 0 3187 192 74 44 chr9 1555694 1556560 -140714884 + L1MB8 LINE L1 5285 6176 -2 243 0 0 0 chr9 1556683 1556710 -140714734 + (TG)n Simple_repeat Simple_repeat 2 28 0 1496 208 38 38 chr9 1557314 1557661 -140713783 - MLT1A1 LTR MaLR 0 365 19 418 296 13 72 chr9 1557726 1557878 -140713566 + MIR SINE MIR 76 218 -44 5417 128 20 9 chr9 1558047 1558938 -140712506 - L1PB3 LINE L1 0 6154 5254 338 336 41 0 chr9 1559010 1559132 -140712312 - MIR3 SINE MIR -21 187 61 184 156 47 94 chr9 1559786 1559850 -140711594 + MIR SINE MIR 70 130 -132 193 311 0 0 chr9 1560210 1560255 -140711189 + MIR SINE MIR 196 240 -22 * 209 308 0 0 chr9 1560221 1560273 -140711171 + L2 LINE L2 3252 3303 -10 1958 145 7 0 chr9 1562001 1562297 -140709147 + AluSx SINE Alu 1 298 -14 411 196 38 0 chr9 1562301 1562459 -140708985 + (TA)n Simple_repeat Simple_repeat 2 165 0 469 211 11 0 chr9 1562474 1562564 -140708880 - LTR16C LTR ERVL -2 489 399 495 235 38 0 chr9 1565192 1565324 -140706120 - Charlie4 DNA MER1_type -1 1960 1824 911 182 21 42 chr9 1566286 1566478 -140704966 - MER5A DNA MER1_type -1 188 1 192 200 0 0 chr9 1566675 1566720 -140704724 + T-rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr9 1569102 1569127 -140702317 + AT_rich Low_complexity Low_complexity 1 25 0 595 242 149 6 chr9 1570027 1570188 -140701256 - MER5A DNA MER1_type 0 189 6 26 0 0 0 chr9 1570784 1570810 -140700634 + AT_rich Low_complexity Low_complexity 1 26 0 649 87 39 0 chr9 1571113 1571217 -140700227 + L1MA3 LINE L1 6198 6305 0 636 235 15 0 chr9 1571337 1571469 -140699975 + MER94 DNA DNA 1 134 0 2155 101 0 10 chr9 1571514 1571812 -140699632 + AluSg SINE Alu 6 300 -10 211 268 106 101 chr9 1571833 1572031 -140699413 - L3 LINE CR1 -100 1477 1279 430 292 5 103 chr9 1572201 1572396 -140699048 - L3 LINE CR1 -30 1547 1372 293 340 64 32 chr9 1573111 1573299 -140698145 + MIR3 SINE MIR 10 203 -5 1796 166 7 3 chr9 1574023 1574319 -140697125 - AluJb SINE Alu -15 297 1 381 307 92 0 chr9 1574823 1574986 -140696458 + Charlie8 DNA MER1_type 96 273 -2144 315 295 150 52 chr9 1576487 1576680 -140694764 + MIR SINE MIR 46 257 -5 205 325 163 12 chr9 1577142 1577302 -140694142 + L2 LINE L2 2157 2340 -974 2478 174 8 32 chr9 1577356 1577828 -140693616 - MER70B LTR ERVL -117 461 1 395 366 31 26 chr9 1578174 1578541 -140692903 + L2 LINE L2 2693 3053 -219 228 241 48 24 chr9 1578585 1578668 -140692776 + MLT1I LTR MaLR 130 214 -195 268 385 117 6 chr9 1578845 1579024 -140692420 + L2 LINE L2 3070 3268 -4 629 302 155 22 chr9 1579231 1579632 -140691812 - LTR33 LTR ERVL -2 519 66 408 261 137 70 chr9 1579774 1580015 -140691429 + L2 LINE L2 2980 3236 -36 199 283 0 0 chr9 1580503 1580556 -140690888 + MIR SINE MIR 76 128 -80 198 0 0 0 chr9 1581633 1581655 -140689789 + (CAG)n Simple_repeat Simple_repeat 1 22 0 420 284 43 7 chr9 1582171 1582312 -140689132 - L2 LINE L2 0 3313 3168 434 345 40 22 chr9 1582642 1582685 -140688759 - L2 LINE L2 -543 2771 2730 477 277 9 0 chr9 1582685 1582797 -140688647 - MER81 DNA DNA -1 113 1 434 345 40 22 chr9 1582797 1582979 -140688465 - L2 LINE L2 -584 2730 2542 1743 168 58 28 chr9 1583032 1583396 -140688048 - THE1C LTR MaLR 0 375 1 5122 132 11 19 chr9 1583396 1584244 -140687200 - THE1C-int LTR MaLR 0 1580 740 1817 116 21 0 chr9 1584248 1584533 -140686911 - THE1C-int LTR MaLR -1184 396 106 5342 108 13 12 chr9 1584533 1585353 -140686091 + HERVL-B3 LTR ERVL 4834 5654 0 1931 215 50 59 chr9 1585353 1585912 -140685532 + MLT2B3 LTR ERVL 1 554 0 807 309 139 14 chr9 1585935 1586440 -140685004 - L2 LINE L2 -826 2488 1921 452 111 0 0 chr9 1586441 1586504 -140684940 + AluJ/FRAM SINE Alu 233 295 -17 201 375 60 39 chr9 1586512 1586744 -140684700 - L2 LINE L2 -1391 1923 1687 250 276 43 43 chr9 1586920 1587036 -140684408 + L2 LINE L2 2595 2710 -604 735 224 37 8 chr9 1587042 1587287 -140684157 + L1MD2 LINE L1 2346 2597 -3943 3408 213 42 21 chr9 1587292 1587492 -140683952 + L1MD2 LINE L1 5482 5676 -1077 2068 84 7 15 chr9 1587492 1587766 -140683678 + AluY SINE Alu 22 293 -18 3408 213 42 21 chr9 1587766 1588584 -140682860 + L1MD2 LINE L1 5676 6538 -215 346 224 10 0 chr9 1588573 1588671 -140682773 + L1MC1 LINE L1 5204 5302 -844 * 271 203 0 0 chr9 1588712 1588771 -140682673 + L1MC1 LINE L1 5292 5350 -983 1019 153 20 10 chr9 1588781 1588977 -140682467 + L1MC1 LINE L1 5571 5768 -565 3065 180 38 19 chr9 1588981 1589579 -140681865 + L1MC1 LINE L1 5356 5941 -301 6220 57 1 1 chr9 1589579 1590354 -140681090 + L1PA6 LINE L1 5367 6141 -13 3065 180 38 19 chr9 1590354 1590379 -140681065 + L1MC1 LINE L1 5941 5964 -278 1671 205 19 3 chr9 1590379 1590745 -140680699 + L1MC1 LINE L1 5962 6333 0 3065 180 38 19 chr9 1590745 1590995 -140680449 + L1MC1 LINE L1 5964 6242 0 654 329 111 23 chr9 1590997 1591111 -140680333 + L2 LINE L2 2708 2811 -502 186 43 0 0 chr9 1591111 1591134 -140680310 + (TC)n Simple_repeat Simple_repeat 2 24 0 654 329 111 23 chr9 1591134 1591572 -140679872 + L2 LINE L2 2811 3312 -1 1075 149 97 154 chr9 1592281 1592664 -140678780 - MLT1A2 LTR MaLR -12 362 2 2897 6 0 0 chr9 1592909 1593223 -140678221 - AluYb8 SINE Alu -4 314 1 1635 264 128 38 chr9 1593322 1594273 -140677171 + L2 LINE L2 2032 3120 -193 2245 162 26 33 chr9 1594273 1594693 -140676751 + MER47B DNA MER2_type 1 417 -1 1635 264 128 38 chr9 1594693 1594902 -140676542 + L2 LINE L2 3120 3309 -4 197 200 25 0 chr9 1594905 1594945 -140676499 - MIR SINE MIR -63 145 105 2016 107 13 3 chr9 1594997 1595314 -140676130 - L1PA15 LINE L1 -582 5583 5264 3417 130 23 5 chr9 1595314 1595875 -140675569 + L1PA15 LINE L1 5595 6165 0 394 325 12 35 chr9 1597372 1597541 -140673903 - MER5B DNA MER1_type 0 178 14 302 274 51 45 chr9 1597708 1597865 -140673579 + MIR SINE MIR 80 237 -25 502 289 151 0 chr9 1598256 1598408 -140673036 + MER5A DNA MER1_type 9 183 -6 407 267 223 5 chr9 1600090 1600292 -140671152 - MER112 DNA MER1_type -7 253 8 1123 127 16 37 chr9 1600484 1600673 -140670771 + MER5A DNA MER1_type 5 189 0 237 248 23 39 chr9 1601533 1601662 -140669782 + (CA)n Simple_repeat Simple_repeat 1 127 0 304 118 29 0 chr9 1601695 1601763 -140669681 + (CA)n Simple_repeat Simple_repeat 1 70 0 2417 69 0 3 chr9 1601923 1602227 -140669217 + AluY SINE Alu 1 303 -8 1924 169 0 3 chr9 1602351 1602647 -140668797 + AluJb SINE Alu 3 297 -15 260 280 107 39 chr9 1602665 1603001 -140668443 + L1M4 LINE L1 3587 3945 -2201 4021 211 34 36 chr9 1603012 1604137 -140667307 - L1MB3 LINE L1 -3 6163 5036 1780 188 26 0 chr9 1604137 1604441 -140667003 - AluJb SINE Alu 0 312 1 4021 211 34 36 chr9 1604441 1605415 -140666029 - L1MB3 LINE L1 -1130 5036 4062 2795 239 71 2 chr9 1605402 1606274 -140665170 - L1MB3 LINE L1 -2319 3810 2879 * 2414 62 0 28 chr9 1606491 1606811 -140664633 - AluY SINE Alu 0 311 1 396 73 0 0 chr9 1606816 1606871 -140664573 + L1PA6 LINE L1 6094 6148 -6 1899 222 103 2 chr9 1606980 1607435 -140664009 + MLT1D LTR MaLR 1 501 -4 898 274 114 76 chr9 1607504 1608453 -140662991 - L1MB3 LINE L1 -4862 1257 335 2566 114 5 11 chr9 1608453 1608830 -140662614 - THE1C LTR MaLR 0 375 1 898 274 114 76 chr9 1608830 1609168 -140662276 - L1MB3 LINE L1 -5784 335 11 991 208 97 143 chr9 1609174 1609760 -140661684 - MLT1F1 LTR MaLR 0 567 17 1999 191 12 10 chr9 1609784 1610193 -140661251 - L1PA16 LINE L1 0 6166 5757 894 245 100 121 chr9 1610243 1611076 -140660368 + L1ME4a LINE L1 5307 6121 0 413 331 22 43 chr9 1611378 1611562 -140659882 - MIR SINE MIR -50 212 33 184 395 47 12 chr9 1611596 1611682 -140659762 - L2 LINE L2 -28 3244 3156 417 86 0 0 chr9 1612466 1612524 -140658920 + (TAA)n Simple_repeat Simple_repeat 3 60 0 200 257 57 14 chr9 1612640 1612710 -140658734 + MIR SINE MIR 58 130 -78 567 228 78 71 chr9 1612779 1613034 -140658410 - MIR SINE MIR -1 261 5 485 361 50 4 chr9 1613608 1613846 -140657598 + MIR SINE MIR 8 256 -6 239 279 15 0 chr9 1615956 1616024 -140655420 + MIR SINE MIR 178 246 -16 8312 198 31 17 chr9 1616393 1619264 -140652180 - L1PA16 LINE L1 -9 6157 3311 671 245 14 0 chr9 1620143 1620290 -140651154 - MIR SINE MIR -111 151 3 24 0 0 0 chr9 1620820 1620844 -140650600 + AT_rich Low_complexity Low_complexity 1 24 0 266 260 0 26 chr9 1620995 1621072 -140650372 + CT-rich Low_complexity Low_complexity 2 76 0 516 222 71 142 chr9 1623013 1623337 -140648107 + MLT1J2 LTR MaLR 150 450 0 27 0 0 0 chr9 1623468 1623495 -140647949 + AT_rich Low_complexity Low_complexity 1 27 0 255 300 0 0 chr9 1623566 1623636 -140647808 - L2 LINE L2 0 3313 3244 240 345 36 9 chr9 1623749 1623859 -140647585 - L2 LINE L2 -91 3222 3110 34 24 0 0 chr9 1624578 1624619 -140646825 + AT_rich Low_complexity Low_complexity 1 41 0 625 245 19 26 chr9 1625011 1625220 -140646224 - MIR SINE MIR 0 262 8 181 303 110 58 chr9 1626023 1626178 -140645266 + L3b LINE CR1 1225 1387 -196 321 260 20 82 chr9 1626271 1626417 -140645027 - MIR SINE MIR -56 206 70 279 0 0 0 chr9 1626728 1626759 -140644685 + (A)n Simple_repeat Simple_repeat 1 31 0 630 175 0 0 chr9 1626834 1626948 -140644496 - L1MB8 LINE L1 -2 6176 6063 307 331 97 36 chr9 1627323 1627737 -140643707 + L2 LINE L2 2267 2705 -609 3377 111 4 14 chr9 1627737 1628242 -140643202 + Charlie3 DNA MER1_type 1 500 -2210 404 119 0 0 chr9 1628236 1628295 -140643149 + Charlie3 DNA MER1_type 2242 2300 -410 * 3024 97 2 50 chr9 1628298 1628782 -140642662 + Charlie3 DNA MER1_type 2245 2705 -5 180 356 20 89 chr9 1628784 1628986 -140642458 + L2 LINE L2 2699 2886 -428 2505 61 0 0 chr9 1629061 1629372 -140642072 - AluY SINE Alu 0 311 1 261 290 0 0 chr9 1629600 1629669 -140641775 + L2 LINE L2 3196 3264 -8 1993 196 70 32 chr9 1629755 1630286 -140641158 + L1MB3 LINE L1 5625 6175 -8 2351 148 0 3 chr9 1630286 1630652 -140640792 + MLT1A1 LTR MaLR 1 365 0 348 359 27 29 chr9 1630662 1630831 -140640613 + MIR3 SINE MIR 20 191 -17 328 296 49 0 chr9 1631072 1631153 -140640291 - L2 LINE L2 -2 3270 3186 231 200 0 0 chr9 1632182 1632222 -140639222 - L2 LINE L2 -12 3301 3262 200 313 138 12 chr9 1632315 1632395 -140639049 - MIR SINE MIR -53 209 120 * 231 344 56 11 chr9 1632378 1632468 -140638976 + MIR SINE MIR 28 121 -87 1353 190 26 95 chr9 1632561 1632983 -140638461 - MSTD LTR MaLR 0 396 4 5602 237 84 27 chr9 1633000 1634626 -140636818 - MSTD-int LTR MaLR -15 1720 2 979 172 59 25 chr9 1634628 1634832 -140636612 - MSTD LTR MaLR 0 396 186 2298 125 0 0 chr9 1635185 1635497 -140635947 - AluSx SINE Alu 0 312 1 349 293 96 19 chr9 1636763 1636920 -140634524 - MIR3 SINE MIR 0 208 40 367 277 85 57 chr9 1637544 1637721 -140633723 + MIR SINE MIR 35 216 -46 932 303 92 10 chr9 1637723 1638135 -140633309 - LTR16A LTR ERVL -4 446 1 358 350 12 8 chr9 1638276 1638558 -140632886 - ERVL LTR ERVL -327 5327 5046 563 356 35 23 chr9 1638592 1639106 -140632338 - ERVL LTR ERVL -754 4900 4436 633 315 36 47 chr9 1639228 1639730 -140631714 - ERVL LTR ERVL -2020 3634 3137 738 317 75 13 chr9 1639766 1640072 -140631372 - ERVL LTR ERVL -1912 3084 2760 3779 290 51 11 chr9 1640073 1641379 -140630065 - HERV16 LTR ERVL -3480 1516 158 420 364 65 16 chr9 1642633 1642817 -140628627 + MIR3 SINE MIR 1 193 -15 345 345 39 97 chr9 1642837 1643251 -140628193 - L2 LINE L2 0 3272 2883 540 286 120 36 chr9 1643704 1644797 -140626647 - L1MDb LINE L1 -3660 2555 1398 315 278 7 48 chr9 1644809 1645069 -140626375 - L1MDb LINE L1 -5097 1108 857 305 339 36 9 chr9 1645727 1645839 -140625605 - L1MDb LINE L1 -5953 252 138 253 254 0 0 chr9 1647864 1647927 -140623517 + GA-rich Low_complexity Low_complexity 2 64 0 954 188 18 61 chr9 1648236 1648428 -140623016 + MER20 DNA MER1_type 1 183 -36 2067 212 125 64 chr9 1648428 1649205 -140622239 - LTR1B LTR ERV1 0 826 3 954 188 18 61 chr9 1649205 1649241 -140622203 + MER20 DNA MER1_type 183 219 0 2015 137 3 3 chr9 1649381 1649680 -140621764 - AluSx SINE Alu -11 301 3 21 36 0 0 chr9 1649812 1649840 -140621604 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr9 1649933 1649968 -140621476 + AT_rich Low_complexity Low_complexity 1 35 0 311 269 50 55 chr9 1650205 1650406 -140621038 - HAL1 LINE L1 -10 2497 2298 1266 298 109 10 chr9 1650418 1650931 -140620513 + Zaphod DNA AcHobo 44 607 -3424 2668 177 23 86 chr9 1650937 1651667 -140619777 - L1MC2 LINE L1 -2 6342 5659 642 254 83 99 chr9 1651665 1652525 -140618919 - L1ME LINE L1 -4968 1088 272 * 438 320 59 51 chr9 1652656 1653065 -140618379 - L1ME LINE L1 -5610 460 49 9598 224 46 29 chr9 1653117 1653629 -140617815 + L1MB2 LINE L1 1964 2466 -3941 12873 30 5 0 chr9 1653629 1655943 -140615501 + L1PA3 LINE L1 3833 6152 -3 9598 224 46 29 chr9 1655943 1659782 -140611662 + L1MB2 LINE L1 2466 6400 -7 1851 276 105 63 chr9 1659794 1659945 -140611499 - HAL1 LINE L1 -542 1965 1822 2512 74 3 0 chr9 1659945 1660254 -140611190 - AluSp SINE Alu -3 310 1 1851 276 105 63 chr9 1660254 1661884 -140609560 - HAL1 LINE L1 -685 1822 110 1034 184 23 122 chr9 1662493 1662836 -140608608 + MLT1A1 LTR MaLR 1 309 -56 196 29 0 57 chr9 1663793 1663828 -140607616 + (TTG)n Simple_repeat Simple_repeat 3 35 0 267 114 0 0 chr9 1664701 1664745 -140606699 + (CA)n Simple_repeat Simple_repeat 2 45 0 194 315 0 0 chr9 1665337 1665391 -140606053 - L2 LINE L2 -5 3308 3255 22 35 0 0 chr9 1665829 1665858 -140605586 + AT_rich Low_complexity Low_complexity 1 29 0 198 100 50 25 chr9 1666198 1666238 -140605206 + MIR SINE MIR 101 141 -67 2402 44 14 14 chr9 1666277 1666573 -140604871 + AluY SINE Alu 1 296 -15 777 193 0 40 chr9 1666651 1666827 -140604617 + MER3 DNA MER1_type 4 125 -84 248 148 19 56 chr9 1667532 1667586 -140603858 - MIR SINE MIR -79 183 132 242 253 53 13 chr9 1667813 1667888 -140603556 + L2 LINE L2 3194 3271 -1 5291 94 8 7 chr9 1667908 1668673 -140602771 + MER4E LTR ERV1 1 766 0 637 224 109 0 chr9 1669201 1669375 -140602069 + L1MC1 LINE L1 6141 6333 0 223 312 56 56 chr9 1669600 1669725 -140601719 + L2 LINE L2 3134 3258 -14 1240 180 25 109 chr9 1669827 1670221 -140601223 + MLT1A1 LTR MaLR 1 361 -4 692 269 55 43 chr9 1673911 1674167 -140597277 + MIR SINE MIR 4 262 0 23 54 0 0 chr9 1674516 1674553 -140596891 + AT_rich Low_complexity Low_complexity 1 37 0 243 220 0 34 chr9 1675382 1675441 -140596003 + (CATA)n Simple_repeat Simple_repeat 3 59 0 285 183 21 0 chr9 1675571 1675639 -140595805 - MER5A DNA MER1_type -116 73 4 597 196 0 0 chr9 1675663 1675770 -140595674 - AluSx SINE Alu -20 292 186 846 86 0 0 chr9 1675770 1675875 -140595569 - AluSx SINE Alu -207 105 1 703 351 59 52 chr9 1675930 1676703 -140594741 + L2 LINE L2 2481 3271 -1 1796 111 4 8 chr9 1676762 1677014 -140594430 + AluSq SINE Alu 12 262 -51 882 107 8 0 chr9 1677003 1677134 -140594310 + AluSp/q SINE Alu 179 310 -3 355 314 20 10 chr9 1677599 1677701 -140593743 + LTR67 LTR ERVL 115 217 -340 1238 251 5 64 chr9 1677732 1678122 -140593322 - L2 LINE L2 0 3313 2947 436 210 87 118 chr9 1678247 1678442 -140593002 + LTR67 LTR ERVL 361 549 -8 230 267 68 93 chr9 1678854 1678882 -140592562 + MER104 DNA Tc2 2 29 -1869 1853 145 0 30 chr9 1678882 1679202 -140592242 - AluSx SINE Alu 0 312 2 230 267 68 93 chr9 1679202 1679334 -140592110 + MER104 DNA Tc2 29 158 -22 3276 169 58 2 chr9 1679878 1680462 -140590982 - MER73 LTR ERVL 0 644 28 385 291 78 47 chr9 1680989 1681247 -140590197 - MLT1H LTR MaLR -204 345 80 207 321 43 62 chr9 1681415 1681577 -140589867 - MIR SINE MIR -6 256 98 216 0 0 0 chr9 1682409 1682433 -140589011 + (TA)n Simple_repeat Simple_repeat 2 25 0 241 224 20 0 chr9 1683099 1683148 -140588296 + GA-rich Low_complexity Low_complexity 4 53 0 838 246 212 15 chr9 1683753 1684078 -140587366 - MLT1J2 LTR MaLR -18 432 44 331 273 91 10 chr9 1684105 1684204 -140587240 - MIR SINE MIR -65 143 37 308 314 86 14 chr9 1685555 1685695 -140585749 + L2 LINE L2 3121 3270 -2 1745 226 12 0 chr9 1685788 1686125 -140585319 - MER58B DNA MER1_type 0 341 1 27 29 0 0 chr9 1686629 1686663 -140584781 + AT_rich Low_complexity Low_complexity 1 34 0 2075 113 44 10 chr9 1686754 1687047 -140584397 + AluSx SINE Alu 1 303 -9 614 328 70 29 chr9 1687233 1687474 -140583970 + MIR SINE MIR 12 262 0 259 357 134 0 chr9 1688385 1688497 -140582947 + MIR3 SINE MIR 55 181 -27 326 320 107 46 chr9 1688879 1689272 -140582172 + L2 LINE L2 2620 3034 -238 417 349 178 25 chr9 1689644 1689959 -140581485 - L2 LINE L2 -371 2943 2581 * 857 111 16 148 chr9 1689949 1690138 -140581306 - MER5A DNA MER1_type -25 164 1 238 370 0 0 chr9 1690138 1690228 -140581216 - L2 LINE L2 -724 2590 2501 2208 176 57 20 chr9 1690883 1691321 -140580123 + MLT1C LTR MaLR 11 464 -3 204 295 143 27 chr9 1691525 1691637 -140579807 + L2 LINE L2 3146 3270 -2 1573 202 76 9 chr9 1692328 1692670 -140578774 - MLT1A1 LTR MaLR 0 365 1 278 282 68 10 chr9 1692670 1692773 -140578671 + MER94 DNA DNA 26 134 0 2376 65 0 10 chr9 1692988 1693282 -140578162 - AluY SINE Alu -20 291 1 491 318 77 14 chr9 1693504 1693724 -140577720 + MIR SINE MIR 29 262 0 2169 106 0 0 chr9 1694843 1695126 -140576318 + AluSg SINE Alu 6 288 -22 595 281 54 0 chr9 1696146 1696331 -140575113 - LTR16A LTR ERVL -235 215 21 397 257 67 0 chr9 1696330 1696435 -140575009 + MER94 DNA DNA 22 133 -1 * 232 312 52 0 chr9 1697170 1697247 -140574197 + L2 LINE L2 3231 3311 -2 1600 328 17 17 chr9 1698408 1698990 -140572454 - HERV16 LTR ERVL -2764 2232 1651 1051 235 101 35 chr9 1699025 1699391 -140572053 - LTR16A LTR ERVL -1 449 60 388 257 67 0 chr9 1699422 1699527 -140571917 + MER94 DNA DNA 22 133 -1 2001 139 3 19 chr9 1700321 1700637 -140570807 + AluJb SINE Alu 1 311 -1 281 191 96 53 chr9 1701207 1701301 -140570143 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1701807 1701942 -140569502 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1702189 1702223 -140569221 + AT_rich Low_complexity Low_complexity 1 34 0 315 277 62 45 chr9 1702415 1702511 -140568933 + L1ME3 LINE L1 5747 5849 -313 2274 119 0 0 chr9 1702511 1702823 -140568621 - AluSx SINE Alu 0 312 1 315 277 62 45 chr9 1702823 1702903 -140568541 + L1ME3 LINE L1 5849 5926 -236 646 247 88 36 chr9 1703098 1703292 -140568152 - MLT1H LTR MaLR 0 549 364 646 233 124 71 chr9 1703313 1703579 -140567865 - MLT1H LTR MaLR -258 291 12 25 51 0 0 chr9 1703698 1703737 -140567707 + AT_rich Low_complexity Low_complexity 1 39 0 393 346 92 19 chr9 1707241 1707304 -140564140 - L3 LINE CR1 -31 1546 1489 2192 138 39 30 chr9 1707304 1707665 -140563779 + THE1B LTR MaLR 1 364 0 393 346 92 19 chr9 1707665 1707861 -140563583 - L3 LINE CR1 -88 1489 1268 354 228 184 56 chr9 1707888 1708208 -140563236 - L1ME4a LINE L1 -31 6090 5730 219 306 40 65 chr9 1708229 1708353 -140563091 - L2 LINE L2 0 3313 3193 279 278 38 45 chr9 1708511 1708644 -140562800 - L1ME4a LINE L1 -590 5531 5400 811 241 82 5 chr9 1709602 1709822 -140561622 - MIR SINE MIR 0 262 26 325 300 100 9 chr9 1709890 1710000 -140561444 - MIR3 SINE MIR -54 154 35 29 28 0 0 chr9 1710152 1710188 -140561256 + AT_rich Low_complexity Low_complexity 1 36 0 44120 44 6 3 chr9 1710925 1717054 -140554390 + L1PA3 LINE L1 8 6153 -2 222 118 0 0 chr9 1717147 1717181 -140554263 + (TC)n Simple_repeat Simple_repeat 2 35 0 902 358 47 12 chr9 1717522 1718094 -140553350 - L2 LINE L2 -1102 2212 1621 684 24 0 0 chr9 1718133 1718215 -140553229 + (TC)n Simple_repeat Simple_repeat 1 82 0 36850 54 9 6 chr9 1718681 1724192 -140547252 + L1PA4 LINE L1 628 6155 0 2786 16 0 0 chr9 1724195 1724500 -140546944 + AluYa5 SINE Alu 1 305 -6 29 0 0 0 chr9 1724670 1724699 -140546745 + AT_rich Low_complexity Low_complexity 1 29 0 3105 303 66 47 chr9 1725163 1726815 -140544629 + ERVL LTR ERVL 1012 2695 -3069 453 258 0 0 chr9 1726839 1726932 -140544512 + MER5A DNA MER1_type 9 101 -88 892 290 128 28 chr9 1726963 1727365 -140544079 + ERVL LTR ERVL 2675 3104 -2381 1253 127 0 0 chr9 1727482 1727655 -140543789 + AluJb SINE Alu 140 312 0 281 191 96 53 chr9 1728225 1728319 -140543125 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1728825 1728960 -140542484 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1729207 1729241 -140542203 + AT_rich Low_complexity Low_complexity 1 34 0 294 212 63 0 chr9 1729433 1729504 -140541940 + L1ME LINE L1 5747 5813 -349 2818 19 0 0 chr9 1729529 1729840 -140541604 - AluYa5 SINE Alu 0 311 1 35584 41 3 2 chr9 1729843 1734913 -140536531 - L1PA4 LINE L1 0 6155 1081 622 178 0 0 chr9 1734881 1734982 -140536462 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1735128 1735214 -140536230 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1735964 1735985 -140535459 + AT_rich Low_complexity Low_complexity 1 21 0 2642 287 119 14 chr9 1736240 1737485 -140533959 + L2 LINE L2 1378 2752 -562 232 273 130 63 chr9 1737485 1737723 -140533721 - LTR16A1 LTR ERVL -12 445 192 701 261 187 28 chr9 1737748 1738112 -140533332 + L2 LINE L2 2892 3313 0 1510 184 46 158 chr9 1739349 1739875 -140531569 - MLT1C LTR MaLR 0 467 1 512 321 29 24 chr9 1740592 1740838 -140530606 + MIR SINE MIR 2 248 -14 261 216 0 0 chr9 1741897 1741948 -140529496 - MADE1 DNA Mariner 0 80 30 2575 146 56 15 chr9 1742029 1742440 -140529004 + MSTA LTR MaLR 1 428 0 300 241 128 73 chr9 1742887 1743160 -140528284 + LTR16C LTR ERVL 163 483 -8 223 283 64 121 chr9 1743276 1743696 -140527748 + L2 LINE L2 2869 3264 -8 2089 110 40 3 chr9 1745009 1745308 -140526136 - AluSx SINE Alu -2 310 1 2459 161 32 19 chr9 1745324 1745795 -140525649 - L1MB7 LINE L1 -9 6175 5699 266 254 0 0 chr9 1748574 1748633 -140522811 + MIR SINE MIR 93 151 -111 313 282 10 58 chr9 1749558 1749661 -140521783 + MIR3 SINE MIR 90 187 -21 322 253 69 11 chr9 1750406 1750493 -140520951 - MIR SINE MIR -142 120 29 1139 226 11 90 chr9 1751563 1751940 -140519504 + MLT2B1 LTR ERVL 1 347 -173 1973 209 45 5 chr9 1751949 1752475 -140518969 + LTR69 LTR ERVL 1 588 0 659 176 0 135 chr9 1752475 1752668 -140518776 + MLT2B1 LTR ERVL 352 518 -2 579 245 108 44 chr9 1752805 1753009 -140518435 - MLT1C LTR MaLR 0 467 251 3700 198 32 26 chr9 1753014 1753816 -140517628 + L1MC3 LINE L1 5863 6669 -1116 743 198 32 0 chr9 1753973 1754099 -140517345 + FLAM_A SINE Alu 1 130 -3 536 165 157 58 chr9 1754524 1754645 -140516799 + FLAM_C SINE Alu 1 133 0 517 186 230 0 chr9 1755088 1755201 -140516243 - FLAM_C SINE Alu -2 141 3 24 53 0 0 chr9 1755846 1755884 -140515560 + AT_rich Low_complexity Low_complexity 1 38 0 851 192 47 5 chr9 1756190 1756383 -140515061 - L1MC4 LINE L1 -680 7362 7162 5365 133 23 52 chr9 1756533 1757397 -140514047 - L1MA9 LINE L1 0 6312 5481 2169 115 7 0 chr9 1757397 1757702 -140513742 - AluSx SINE Alu -5 307 1 5365 133 23 52 chr9 1757702 1757853 -140513591 - L1MA9 LINE L1 -831 5481 5327 258 32 0 0 chr9 1758811 1758842 -140512602 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 611 219 15 7 chr9 1759593 1759730 -140511714 - MSTD LTR MaLR -258 138 1 397 332 57 17 chr9 1760339 1760640 -140510804 + HAL1 LINE L1 110 422 -2085 403 302 132 16 chr9 1761277 1761466 -140509978 - MIR SINE MIR -39 223 13 243 0 0 0 chr9 1761550 1761577 -140509867 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2076 112 0 10 chr9 1762864 1763178 -140508266 + AluY SINE Alu 1 311 0 7722 41 7 1 chr9 1764302 1765404 -140506040 + L1PA4 LINE L1 5037 6144 -11 222 118 0 0 chr9 1765508 1765542 -140505902 + (TC)n Simple_repeat Simple_repeat 2 35 0 871 356 47 14 chr9 1765884 1766457 -140504987 - L2 LINE L2 -1102 2212 1621 399 21 0 0 chr9 1766496 1766544 -140504900 + (TC)n Simple_repeat Simple_repeat 1 48 0 2007 206 104 50 chr9 1766832 1767406 -140504038 - MLT1E3 LTR MaLR 0 624 20 201 94 0 0 chr9 1767521 1767553 -140503891 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2317 98 0 0 chr9 1767557 1767853 -140503591 - AluY SINE Alu -15 296 1 854 78 0 0 chr9 1768092 1768194 -140503250 + L1PA8 LINE L1 6057 6158 -14 916 266 72 26 chr9 1768235 1768540 -140502904 + L1M4b LINE L1 1062 1380 -5479 502 264 119 6 chr9 1768838 1769191 -140502253 + MLT1H LTR MaLR 138 549 0 302 291 30 79 chr9 1769991 1770156 -140501288 + MIR SINE MIR 12 168 -94 417 259 118 30 chr9 1770255 1770390 -140501054 + MIR SINE MIR 14 160 -102 2090 56 0 0 chr9 1770399 1770650 -140500794 - L1PA2 LINE L1 -403 5752 5502 3836 21 0 0 chr9 1770650 1771068 -140500376 + L1PA2 LINE L1 5737 6155 0 2174 186 74 9 chr9 1771436 1771871 -140499573 - L1MB2 LINE L1 -23 6148 5686 359 292 62 9 chr9 1772508 1772621 -140498823 + L2 LINE L2 3179 3297 -16 1583 176 61 3 chr9 1773368 1773663 -140497781 + AluJb SINE Alu 1 312 0 3514 77 2 0 chr9 1773813 1774268 -140497176 - L1PA7 LINE L1 -785 5361 4903 6600 62 6 0 chr9 1774268 1775054 -140496390 + L1PA7 LINE L1 5363 6154 0 229 282 14 84 chr9 1775064 1775135 -140496309 - MIR SINE MIR -109 99 34 184 0 97 0 chr9 1777008 1777039 -140494405 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2373 221 46 15 chr9 1777390 1777916 -140493528 - MLT1F LTR MaLR 0 542 1 202 234 9 140 chr9 1778792 1778899 -140492545 - MER5B DNA MER1_type 0 178 86 265 275 63 21 chr9 1779965 1780107 -140491337 - ERVL LTR ERVL -8 5756 5609 27 49 0 0 chr9 1780265 1780306 -140491138 + AT_rich Low_complexity Low_complexity 1 41 0 1642 209 8 48 chr9 1780441 1780819 -140490625 - MLT1A1 LTR MaLR 0 365 3 7132 205 23 64 chr9 1780832 1782178 -140489266 - MLT1A1-int LTR MaLR -6 1729 425 356 43 0 0 chr9 1782178 1782225 -140489219 + MADE1 DNA Mariner 30 76 -4 7132 205 23 64 chr9 1782225 1782634 -140488810 - MLT1A1-int LTR MaLR -1310 425 1 1475 248 19 14 chr9 1782634 1782997 -140488447 - MLT1A1 LTR MaLR 0 365 1 4864 306 71 69 chr9 1783013 1785446 -140485998 - ERVL LTR ERVL -546 5218 2677 457 258 0 0 chr9 1785446 1785539 -140485905 - MER5A DNA MER1_type -88 101 9 4864 306 71 69 chr9 1785539 1787408 -140484036 - ERVL LTR ERVL -3087 2677 814 29 0 0 0 chr9 1787679 1787708 -140483736 + AT_rich Low_complexity Low_complexity 1 29 0 2749 16 0 0 chr9 1787878 1788183 -140483261 - AluYa5 SINE Alu -6 305 1 33215 41 3 2 chr9 1788186 1793256 -140478188 - L1PA4 LINE L1 0 6155 1081 578 178 0 0 chr9 1793224 1793325 -140478119 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1793471 1793557 -140477887 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1794307 1794328 -140477116 + AT_rich Low_complexity Low_complexity 1 21 0 2661 286 120 15 chr9 1794583 1795828 -140475616 + L2 LINE L2 1378 2752 -562 698 270 177 32 chr9 1796048 1796455 -140474989 + L2 LINE L2 2848 3313 0 1307 184 46 158 chr9 1797692 1798218 -140473226 - MLT1C LTR MaLR 0 467 1 518 321 29 24 chr9 1798935 1799181 -140472263 + MIR SINE MIR 2 248 -14 236 178 0 0 chr9 1800246 1800291 -140471153 - MADE1 DNA Mariner -6 74 30 2385 146 56 15 chr9 1800372 1800783 -140470661 + MSTA LTR MaLR 1 428 0 231 236 131 75 chr9 1801230 1801496 -140469948 + LTR16C LTR ERVL 163 476 -15 230 309 52 109 chr9 1801619 1802039 -140469405 + L2 LINE L2 2869 3264 -8 2086 110 40 3 chr9 1803352 1803651 -140467793 - AluSx SINE Alu -2 310 1 2235 161 32 19 chr9 1803667 1804138 -140467306 - L1MB7 LINE L1 -9 6175 5699 270 254 0 0 chr9 1806917 1806976 -140464468 + MIR SINE MIR 93 151 -111 309 282 10 58 chr9 1807901 1808004 -140463440 + MIR3 SINE MIR 90 187 -21 321 253 69 11 chr9 1808749 1808836 -140462608 - MIR SINE MIR -142 120 29 1009 225 11 91 chr9 1809906 1810280 -140461164 + MLT2B1 LTR ERVL 1 344 -176 1811 209 45 5 chr9 1810292 1810818 -140460626 + LTR69 LTR ERVL 1 588 0 584 176 0 135 chr9 1810818 1811011 -140460433 + MLT2B1 LTR ERVL 352 518 -2 500 250 108 44 chr9 1811148 1811352 -140460092 - MLT1C LTR MaLR 0 467 251 5996 176 94 75 chr9 1811357 1812581 -140458863 + L1MC3 LINE L1 5863 7219 -566 230 264 33 33 chr9 1812581 1812672 -140458772 + MLT1F1 LTR MaLR 35 125 -442 5996 176 94 75 chr9 1812672 1813053 -140458391 + L1MC3 LINE L1 7219 7591 -194 862 174 60 0 chr9 1813056 1813240 -140458204 + L1MC2 LINE L1 6137 6331 -13 604 248 8 0 chr9 1814034 1814159 -140457285 + FLAM_A SINE Alu 1 126 -16 24 0 0 0 chr9 1814177 1814201 -140457243 + AT_rich Low_complexity Low_complexity 1 24 0 321 169 17 0 chr9 1814448 1814507 -140456937 - L1MB7 LINE L1 -445 5721 5662 669 70 85 4 chr9 1814507 1814779 -140456665 + (TA)n Simple_repeat Simple_repeat 1 293 0 206 108 92 15 chr9 1814780 1814845 -140456599 + (TTATA)n Simple_repeat Simple_repeat 2 71 0 627 96 39 34 chr9 1814849 1815027 -140456417 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 188 35 35 0 chr9 1815047 1815076 -140456368 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 186 98 59 0 chr9 1815185 1815236 -140456208 + (TA)n Simple_repeat Simple_repeat 1 54 0 63 14 0 0 chr9 1815236 1815306 -140456138 + AT_rich Low_complexity Low_complexity 1 70 0 538 96 45 39 chr9 1815306 1815484 -140455960 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 352 184 42 24 chr9 1815484 1815652 -140455792 + (TTATA)n Simple_repeat Simple_repeat 2 172 0 5599 244 51 20 chr9 1815652 1815700 -140455744 - L1P3 LINE L1 -470 5702 5657 7290 36 0 0 chr9 1815700 1816661 -140454783 - L1PA5 LINE L1 -15 6139 5172 5599 244 51 20 chr9 1816661 1818959 -140452485 - L1P3 LINE L1 -515 5657 3269 2041 146 0 0 chr9 1819159 1819446 -140451998 + AluSx SINE Alu 1 287 -25 494 154 22 7 chr9 1819446 1819582 -140451862 + (TA)n Simple_repeat Simple_repeat 1 138 0 2739 3 0 3 chr9 1819638 1819940 -140451504 + AluYa5 SINE Alu 1 301 -10 2229 246 14 26 chr9 1820416 1820985 -140450459 - MLT1F1 LTR MaLR -2 565 4 1327 176 12 8 chr9 1821062 1821318 -140450126 - L1 LINE L1 -2316 3830 3574 1818 143 0 3 chr9 1821318 1821605 -140449839 + L1PA15 LINE L1 5876 6161 -4 647 317 45 8 chr9 1822165 1822408 -140449036 + MIR SINE MIR 8 259 -3 35 16 0 49 chr9 1823007 1823068 -140448376 + AT_rich Low_complexity Low_complexity 1 58 0 199 430 52 10 chr9 1823243 1823436 -140448008 - L2 LINE L2 -215 3057 2857 312 343 60 69 chr9 1824566 1824916 -140446528 + HAL1 LINE L1 1 347 -2160 588 271 43 31 chr9 1825202 1825553 -140445891 + HAL1 LINE L1 812 1166 -1341 300 280 8 64 chr9 1825564 1825689 -140445755 + HAL1 LINE L1 1227 1344 -1163 2333 88 0 35 chr9 1827418 1827737 -140443707 - AluSg SINE Alu -2 308 1 216 298 0 0 chr9 1828544 1828601 -140442843 + GA-rich Low_complexity Low_complexity 1 57 0 1957 157 15 3 chr9 1829084 1829422 -140442022 - MER2 DNA MER2_type 0 344 3 318 268 0 57 chr9 1829568 1829691 -140441753 - L3 LINE CR1 -300 1277 1162 503 246 56 56 chr9 1829708 1829850 -140441594 - MER5A DNA MER1_type -21 168 27 540 317 136 40 chr9 1829856 1830386 -140441058 - L3 LINE CR1 -402 1175 595 385 95 0 119 chr9 1830405 1830489 -140440955 - MLT1D LTR MaLR -2 503 430 8551 97 7 8 chr9 1830495 1832444 -140439000 - L1PA7 LINE L1 0 6154 4188 7640 92 12 4 chr9 1832444 1833527 -140437917 - L1PA7 LINE L1 -3413 2733 1642 1424 207 153 26 chr9 1833531 1833918 -140437526 - MLT1D LTR MaLR -69 436 1 302 343 50 34 chr9 1833968 1834159 -140437285 - MIR SINE MIR -50 212 20 486 315 144 5 chr9 1834159 1834381 -140437063 - L3 LINE CR1 -1029 548 296 266 294 102 37 chr9 1835086 1835273 -140436171 + L2 LINE L2 2069 2267 -1047 982 174 35 6 chr9 1835585 1835757 -140435687 - MER5B DNA MER1_type 0 178 2 565 317 66 21 chr9 1836168 1836411 -140435033 + MIR SINE MIR 6 259 -3 184 294 29 29 chr9 1836505 1836573 -140434871 + L2 LINE L2 3244 3311 -2 219 139 0 0 chr9 1837318 1837344 -140434100 + (CA)n Simple_repeat Simple_repeat 2 30 -14 1514 180 115 49 chr9 1837344 1837710 -140433734 + MLT1B LTR MaLR 1 390 0 219 139 0 0 chr9 1837710 1837726 -140433718 + (CA)n Simple_repeat Simple_repeat 29 44 0 2164 111 7 0 chr9 1837943 1838231 -140433213 + AluSx SINE Alu 1 290 -22 28 29 0 0 chr9 1838231 1838266 -140433178 + AT_rich Low_complexity Low_complexity 1 35 0 480 302 135 14 chr9 1838549 1838771 -140432673 - MIR SINE MIR -3 259 11 5011 158 66 33 chr9 1839166 1839321 -140432123 + L1MC3 LINE L1 6709 6857 -928 225 0 0 0 chr9 1839321 1839346 -140432098 + (CA)n Simple_repeat Simple_repeat 2 26 0 5011 158 66 33 chr9 1839346 1840232 -140431212 + L1MC3 LINE L1 6857 7785 0 872 296 51 12 chr9 1840737 1841161 -140430283 - LTR16B LTR ERVL 0 464 1 293 109 0 0 chr9 1841829 1841875 -140429569 + MADE1 DNA Mariner 1 46 -34 268 179 0 71 chr9 1844268 1844324 -140427120 + L3 LINE CR1 1524 1575 -2 2156 117 0 0 chr9 1844533 1844816 -140426628 + AluSx SINE Alu 1 283 -29 1031 294 40 62 chr9 1844955 1845377 -140426067 - MER115 DNA AcHobo -271 422 10 268 380 23 8 chr9 1845954 1846083 -140425361 - MIR SINE MIR -62 146 16 253 253 11 46 chr9 1846160 1846247 -140425197 + L2 LINE L2 3229 3312 -1 256 247 101 0 chr9 1846935 1847024 -140424420 - MER113 DNA MER1_type? -420 101 4 395 277 107 0 chr9 1847028 1847140 -140424304 - MIR3 SINE MIR -49 159 36 267 306 0 0 chr9 1847405 1847497 -140423947 - MIR SINE MIR -62 146 66 321 251 156 52 chr9 1848241 1848296 -140423148 - MIR SINE MIR -18 244 196 1774 171 72 93 chr9 1848296 1848771 -140422673 - MLT1C LTR MaLR 0 467 3 321 251 156 52 chr9 1848771 1848926 -140422518 - MIR SINE MIR -66 196 12 798 253 30 47 chr9 1849052 1849147 -140422297 - MIR SINE MIR -8 254 159 1929 113 49 7 chr9 1849147 1849431 -140422013 - AluSx SINE Alu -16 296 1 798 253 30 47 chr9 1849431 1849568 -140421876 - MIR SINE MIR -103 159 26 576 232 99 72 chr9 1850863 1851072 -140420372 - MER102b DNA MER1_type -1093 335 116 468 0 0 0 chr9 1851072 1851124 -140420320 + (TG)n Simple_repeat Simple_repeat 2 53 0 576 232 99 72 chr9 1851124 1851177 -140420267 - MER102b DNA MER1_type -1312 116 66 356 198 214 57 chr9 1851191 1851383 -140420061 - MLT1H LTR MaLR -7 548 327 427 164 0 0 chr9 1851757 1851830 -140419614 + AluS SINE Alu 2 74 -238 550 275 38 30 chr9 1851848 1852124 -140419320 - MLT1H LTR MaLR -292 257 10 794 269 34 8 chr9 1852193 1852427 -140419017 + MIR SINE MIR 7 246 -16 1834 151 12 107 chr9 1852439 1852870 -140418574 - MLT1B LTR MaLR 0 390 1 315 280 27 13 chr9 1852956 1853106 -140418338 + (TA)n Simple_repeat Simple_repeat 2 153 0 1811 203 29 29 chr9 1853927 1854301 -140417143 + MLT1A2 LTR MaLR 1 374 0 668 280 114 4 chr9 1854626 1854862 -140416582 + MIR SINE MIR 1 262 0 353 316 186 0 chr9 1856601 1856816 -140414628 + MLT1L LTR MaLR 90 344 -271 2260 122 21 24 chr9 1857174 1857510 -140413934 - MER1B DNA MER1_type 0 337 3 4186 69 19 4 chr9 1857798 1858321 -140413123 + L1PA7 LINE L1 5624 6154 0 507 191 9 45 chr9 1858604 1858714 -140412730 + MER97b DNA MER1_type? 74 179 -874 2245 110 0 7 chr9 1859143 1859444 -140412000 + AluSx SINE Alu 1 299 -13 643 286 44 15 chr9 1859446 1859649 -140411795 + MLT1L LTR MaLR 394 602 -13 202 235 12 141 chr9 1860094 1860179 -140411265 - L2 LINE L2 -3 3269 3196 23 0 0 0 chr9 1860959 1860982 -140410462 + AT_rich Low_complexity Low_complexity 1 23 0 614 147 7 73 chr9 1861051 1861187 -140410257 - L1MB1 LINE L1 -26 6163 6037 276 289 133 16 chr9 1861464 1861592 -140409852 - L3 LINE CR1 -1 1576 1434 2535 175 17 7 chr9 1861681 1862103 -140409341 + MSTB LTR MaLR 1 426 0 2306 83 0 51 chr9 1862118 1862430 -140409014 + AluSc SINE Alu 1 296 -13 8357 189 41 22 chr9 1862431 1864047 -140407397 + MSTB-int LTR MaLR 6 1651 0 2228 188 57 5 chr9 1864047 1864452 -140406992 + MSTB LTR MaLR 1 426 0 798 69 0 0 chr9 1864487 1864589 -140406855 - L1PB1 LINE L1 0 6151 6050 257 274 0 14 chr9 1864595 1864668 -140406776 - L3 LINE CR1 -292 1285 1214 293 269 146 23 chr9 1865285 1865415 -140406029 - L3 LINE CR1 -426 1151 1006 900 316 39 31 chr9 1866197 1866612 -140404832 - LTR16C LTR ERVL -1 490 73 724 284 91 12 chr9 1867100 1867343 -140404101 + MIR SINE MIR 1 262 0 6351 216 52 28 chr9 1867793 1869033 -140402411 + L1MA5 LINE L1 13 1222 -5986 2091 58 0 0 chr9 1869033 1869276 -140402168 - L1PA5 LINE L1 0 6154 5912 6351 216 52 28 chr9 1869276 1869421 -140402023 + L1MA5 LINE L1 1222 1362 -5846 276 30 0 0 chr9 1869421 1869454 -140401990 + (CA)n Simple_repeat Simple_repeat 2 34 0 6351 216 52 28 chr9 1869454 1869821 -140401623 + L1MA5 LINE L1 1362 1719 -5489 2240 120 0 3 chr9 1869821 1870130 -140401314 + AluSx SINE Alu 1 308 -4 6351 216 52 28 chr9 1870130 1871261 -140400183 + L1MA5 LINE L1 1719 3845 -3363 * 25807 74 12 2 chr9 1871253 1875494 -140395950 + L1PA6 LINE L1 1872 6154 0 234 308 77 19 chr9 1875522 1875678 -140395766 + L1ME4a LINE L1 5956 6120 -1 2418 190 57 17 chr9 1875743 1876217 -140395227 + MER68 LTR ERV1 1 493 -69 6997 176 54 25 chr9 1876217 1879594 -140391850 + L1MA5 LINE L1 3822 7357 -5 1955 143 0 22 chr9 1879618 1879932 -140391512 + AluSx SINE Alu 1 307 -5 211 289 19 39 chr9 1880907 1881011 -140390433 + MIR3 SINE MIR 99 200 -8 237 255 170 21 chr9 1881111 1881205 -140390239 - L2 LINE L2 -5 3267 3160 1075 216 51 51 chr9 1883369 1883613 -140387831 + L1ME1 LINE L1 5753 5999 -167 507 261 18 0 chr9 1883613 1883724 -140387720 - MER81 DNA DNA 0 114 2 1075 216 51 51 chr9 1883724 1883775 -140387669 + L1ME1 LINE L1 5998 6048 -118 303 121 0 52 chr9 1883791 1883849 -140387595 + L1MB7 LINE L1 6113 6167 -17 256 280 32 21 chr9 1883880 1883973 -140387471 + L2 LINE L2 3139 3232 -40 214 268 85 78 chr9 1884173 1884326 -140387118 - MER5A DNA MER1_type 0 189 36 * 269 379 7 7 chr9 1884192 1884337 -140387107 + MER5B DNA MER1_type 21 165 -13 280 193 72 60 chr9 1884712 1884795 -140386649 + MIR3 SINE MIR 118 201 -7 2054 129 0 10 chr9 1885190 1885493 -140385951 + AluSx SINE Alu 1 300 -12 2157 149 10 72 chr9 1885676 1886092 -140385352 - MLT1B LTR MaLR 0 390 1 226 258 161 32 chr9 1887243 1887367 -140384077 + MIR SINE MIR 122 261 -1 457 268 67 31 chr9 1887803 1887997 -140383447 - MIR SINE MIR -49 213 13 2288 107 0 3 chr9 1888614 1888914 -140382530 - AluSp SINE Alu -14 299 1 607 124 0 11 chr9 1888914 1889003 -140382441 - AluSc SINE Alu -5 304 217 293 370 62 7 chr9 1890293 1890439 -140381005 + L2 LINE L2 3117 3270 -2 717 309 34 27 chr9 1890576 1890838 -140380606 - LTR16A LTR ERVL -170 280 17 2181 271 79 49 chr9 1891004 1892097 -140379347 - L2 LINE L2 -4 3309 2175 212 204 0 37 chr9 1892334 1892388 -140379056 - L2 LINE L2 -1143 2171 2120 457 252 109 41 chr9 1892628 1892952 -140378492 + MLT1I LTR MaLR 53 542 0 291 395 7 7 chr9 1892975 1893122 -140378322 + MIR SINE MIR 111 257 -5 234 337 50 39 chr9 1894804 1895086 -140376358 - LTR16C LTR ERVL -3 488 204 2221 171 25 3 chr9 1895111 1895468 -140375976 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr9 1895897 1895932 -140375512 + AT_rich Low_complexity Low_complexity 1 35 0 228 189 57 19 chr9 1895990 1896096 -140375348 + (TA)n Simple_repeat Simple_repeat 1 110 0 204 188 0 0 chr9 1896186 1896218 -140375226 - L2 LINE L2 -71 3242 3211 314 248 165 34 chr9 1896237 1896443 -140375001 - MARNA DNA Mariner -149 437 205 306 293 40 0 chr9 1896979 1897054 -140374390 - MIR SINE MIR -61 147 70 236 160 0 40 chr9 1897506 1897556 -140373888 - L2 LINE L2 -8 3305 3258 257 325 26 0 chr9 1897563 1897677 -140373767 - L1ME LINE L1 -254 5867 5751 186 389 11 0 chr9 1897892 1897982 -140373462 - L2 LINE L2 -2 3270 3180 2434 192 56 29 chr9 1898153 1898675 -140372769 - MLT1F LTR MaLR 0 542 7 269 274 116 0 chr9 1899595 1899690 -140371754 + MLT1K LTR MaLR 373 478 -110 1880 156 158 24 chr9 1899899 1900309 -140371135 + MLT1C LTR MaLR 3 467 0 195 69 0 0 chr9 1900432 1900461 -140370983 + (CA)n Simple_repeat Simple_repeat 2 30 0 328 225 48 33 chr9 1900483 1900658 -140370786 - L1ME3A LINE L1 -231 5939 5764 588 276 133 56 chr9 1901337 1901728 -140369716 + MLT1L LTR MaLR 195 615 0 195 304 0 0 chr9 1901858 1901904 -140369540 - MIR SINE MIR -69 139 94 180 111 0 0 chr9 1902296 1902323 -140369121 + (T)n Simple_repeat Simple_repeat 1 27 0 180 279 58 35 chr9 1904208 1904294 -140367150 + MIR3 SINE MIR 111 198 -10 2131 128 0 19 chr9 1905390 1905703 -140365741 - AluSg SINE Alu -3 307 1 235 271 86 0 chr9 1906754 1906824 -140364620 - MIR3 SINE MIR -15 193 118 310 286 22 22 chr9 1907014 1907105 -140364339 - HAL1 LINE L1 -172 2335 2245 21 57 0 0 chr9 1907338 1907373 -140364071 + AT_rich Low_complexity Low_complexity 1 35 0 443 269 42 12 chr9 1907856 1908023 -140363421 - LTR33A LTR ERVL -2 521 350 247 309 41 10 chr9 1908193 1908290 -140363154 - LTR33A LTR ERVL -365 158 59 575 235 55 67 chr9 1908445 1908700 -140362744 - HAL1 LINE L1 -803 1704 1453 195 114 0 0 chr9 1908702 1908737 -140362707 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 506 289 29 46 chr9 1908752 1908991 -140362453 + L2 LINE L2 2521 2755 -559 350 253 84 0 chr9 1908991 1909074 -140362370 - MLT1H LTR MaLR 0 549 460 227 200 0 147 chr9 1909243 1909318 -140362126 - MLT1H LTR MaLR -288 261 198 321 284 91 57 chr9 1909661 1909957 -140361487 + HAL1b LINE L1 219 524 -824 8605 221 20 16 chr9 1910138 1910574 -140360870 + L1 LINE L1 2605 3038 -3108 2370 86 3 0 chr9 1910574 1910876 -140360568 + AluY SINE Alu 1 303 -8 8605 221 20 16 chr9 1910876 1912521 -140358923 + L1 LINE L1 3038 4693 -1453 5277 149 50 3 chr9 1912521 1913520 -140357924 + L1PA16 LINE L1 5116 6157 -9 21 36 0 0 chr9 1913520 1913548 -140357896 + AT_rich Low_complexity Low_complexity 1 28 0 2003 173 17 11 chr9 1913697 1914049 -140357395 + THE1A LTR MaLR 2 355 0 12165 101 14 0 chr9 1914049 1915607 -140355837 + THE1A-int LTR MaLR 1 1580 0 2203 153 14 11 chr9 1915607 1915961 -140355483 + THE1A LTR MaLR 1 355 0 2068 133 0 0 chr9 1915998 1916306 -140355138 - AluSc SINE Alu 0 308 1 195 114 0 0 chr9 1916451 1916486 -140354958 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 257 315 14 0 chr9 1916492 1916565 -140354879 - L2 LINE L2 -4 3309 3236 321 26 0 0 chr9 1916710 1916749 -140354695 + U5 snRNA snRNA 6 44 -72 1000 270 90 31 chr9 1917009 1917431 -140354013 - MLT1J2 LTR MaLR 0 450 4 2118 143 71 13 chr9 1918574 1918953 -140352491 - L1MB3 LINE L1 -8 6175 5775 1671 56 0 0 chr9 1919039 1919234 -140352210 + L1PA11 LINE L1 5980 6174 0 656 297 78 47 chr9 1919279 1919687 -140351757 - LTR16C LTR ERVL -10 481 61 880 291 80 40 chr9 1919804 1920179 -140351265 - MLT1J2 LTR MaLR -57 393 4 484 251 64 35 chr9 1920739 1920811 -140350633 + L1ME LINE L1 5579 5647 -474 940 284 219 7 chr9 1920811 1921241 -140350203 + LTR33 LTR ERVL 1 521 0 484 251 64 35 chr9 1921241 1921339 -140350105 + L1ME LINE L1 5647 5754 -367 183 129 0 0 chr9 1921637 1921668 -140349776 + (A)n Simple_repeat Simple_repeat 1 31 0 240 281 231 0 chr9 1921811 1921932 -140349512 - MIR SINE MIR -8 254 106 669 283 197 49 chr9 1922160 1922726 -140348718 - L2 LINE L2 -4 3309 2669 189 0 0 0 chr9 1922813 1922834 -140348610 + (A)n Simple_repeat Simple_repeat 1 21 0 1397 224 131 57 chr9 1922861 1923366 -140348078 - MLT1F LTR MaLR 0 542 1 2593 102 5 8 chr9 2025887 2026261 -140245183 + THE1C LTR MaLR 3 375 0 413 267 10 0 chr9 2027580 2027681 -140243763 + MLT1E2 LTR MaLR 518 619 -7 2200 122 0 10 chr9 2028238 2028542 -140242902 + AluSx SINE Alu 2 302 -10 220 158 35 35 chr9 2030704 2030761 -140240683 + A-rich Low_complexity Low_complexity 2 58 0 875 315 99 19 chr9 2031974 2032396 -140239048 - L2 LINE L2 0 3313 2858 241 338 151 0 chr9 2033851 2033990 -140237454 + MER91A DNA MER1_type 3 162 -34 701 307 48 35 chr9 2035934 2036331 -140235113 - L1MC5 LINE L1 -531 7430 7029 2258 91 35 0 chr9 2036546 2036832 -140234612 - AluSq SINE Alu -17 296 1 315 181 145 12 chr9 2036995 2037078 -140234366 - L1MC4 LINE L1 -136 7906 7813 498 327 77 4 chr9 2039775 2040017 -140231427 + MIR SINE MIR 3 261 -1 2182 128 3 3 chr9 2040152 2040458 -140230986 - AluSx SINE Alu -6 306 1 670 261 44 32 chr9 2041412 2041661 -140229783 + MIR SINE MIR 6 257 -5 204 329 92 40 chr9 2041668 2041820 -140229624 - L2 LINE L2 -8 3264 3105 2858 13 0 3 chr9 2042128 2042440 -140229004 - AluYa5 SINE Alu 0 311 1 264 281 135 52 chr9 2042452 2042703 -140228741 - L2 LINE L2 -248 3024 2753 248 137 0 20 chr9 2043219 2043270 -140228174 + LTR33A LTR ERVL 4 53 -470 22 0 0 0 chr9 2043290 2043312 -140228132 + AT_rich Low_complexity Low_complexity 1 22 0 559 301 56 10 chr9 2043313 2043509 -140227935 - MIR SINE MIR -56 206 2 270 344 11 11 chr9 2043990 2044083 -140227361 + MIR3 SINE MIR 67 159 -49 213 39 0 0 chr9 2044246 2044272 -140227172 + (TG)n Simple_repeat Simple_repeat 1 26 0 403 326 7 14 chr9 2044283 2044421 -140227023 - MIR SINE MIR -98 164 28 209 188 0 75 chr9 2045078 2045158 -140226286 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 1588 175 58 7 chr9 2045192 2045483 -140225961 - AluJo SINE Alu -1 311 6 2446 74 0 3 chr9 2045579 2045875 -140225569 - AluY SINE Alu -16 295 1 686 301 122 34 chr9 2046143 2046611 -140224833 - LTR33A LTR ERVL -9 514 6 3585 39 15 2 chr9 2046671 2047130 -140224314 + L1PA5 LINE L1 5686 6150 -4 251 188 42 0 chr9 2047398 2047446 -140223998 + MIR SINE MIR 94 143 -119 869 237 54 0 chr9 2051060 2051246 -140220198 + Tigger7 DNA MER2_type 7 202 -2285 1430 216 96 35 chr9 2053285 2053775 -140217669 - MLT2B1 LTR ERVL 0 520 1 261 338 42 0 chr9 2054253 2054395 -140217049 + MER5A DNA MER1_type 40 187 -2 306 73 0 0 chr9 2054409 2054450 -140216994 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 340 327 7 4 chr9 2055221 2055510 -140215934 + (CA)n Simple_repeat Simple_repeat 1 290 0 238 216 98 49 chr9 2056294 2056396 -140215048 + LTR16C LTR ERVL 385 491 0 247 286 36 0 chr9 2056982 2057066 -140214378 - MIR SINE MIR -70 138 52 376 321 47 21 chr9 2058552 2058745 -140212699 - L1MEd LINE L1 -5920 199 2 239 312 128 0 chr9 2058863 2058988 -140212456 - L1M4 LINE L1 -1988 4158 4018 7596 17 0 0 chr9 2058994 2060329 -140211115 - L1PA3 LINE L1 0 6155 4821 6117 38 3 0 chr9 2060329 2061103 -140210341 + L1P LINE L1 3790 4565 -1581 220 320 70 55 chr9 2062485 2062613 -140208831 - L2 LINE L2 -1 3271 3142 1184 282 73 18 chr9 2063579 2064072 -140207372 - LTR33 LTR ERVL 0 521 2 391 252 137 33 chr9 2065145 2065374 -140206070 - MLT1G3 LTR MaLR -171 371 135 276 313 172 0 chr9 2066036 2066164 -140205280 + MIR SINE MIR 57 206 -56 583 203 0 34 chr9 2066226 2066344 -140205100 - MER58B DNA MER1_type -1 340 227 249 366 16 52 chr9 2067672 2067866 -140203578 + MIR SINE MIR 6 192 -70 930 247 113 53 chr9 2068145 2068367 -140203077 + MLT1L LTR MaLR 1 208 -303 850 252 61 0 chr9 2068367 2068613 -140202831 - MIR SINE MIR 0 262 2 930 247 113 53 chr9 2068613 2068946 -140202498 + MLT1L LTR MaLR 208 507 -4 204 313 38 12 chr9 2069039 2069119 -140202325 + L3 LINE CR1 1480 1561 -16 961 135 7 0 chr9 2069461 2069609 -140201835 + THE1B LTR MaLR 216 364 0 10081 98 37 40 chr9 2069609 2071194 -140200250 + THE1B-int LTR MaLR 1 1580 0 2616 110 0 0 chr9 2071194 2071558 -140199886 + THE1B LTR MaLR 1 364 0 303 378 58 29 chr9 2071568 2071809 -140199635 + L1 LINE L1 4531 4778 -1368 2550 66 0 3 chr9 2071996 2072297 -140199147 + AluY SINE Alu 2 301 -10 431 241 186 0 chr9 2072458 2072603 -140198841 + MER5A DNA MER1_type 10 181 -8 2316 235 51 46 chr9 2072840 2073594 -140197850 - L1M4 LINE L1 -1778 4368 3608 1366 171 98 29 chr9 2073594 2073869 -140197575 - AluJb SINE Alu -18 294 1 2316 235 51 46 chr9 2073869 2073880 -140197564 - L1M4 LINE L1 -2538 3608 3599 673 249 80 20 chr9 2073875 2074076 -140197368 - L1MD2 LINE L1 -16 6343 6131 * 255 197 237 0 chr9 2074318 2074394 -140197050 - L1MD2 LINE L1 -543 5699 5606 * 478 242 113 36 chr9 2074393 2074587 -140196857 - L1M4 LINE L1 -2523 3623 3415 504 336 195 23 chr9 2075205 2076039 -140195405 + L2 LINE L2 1167 2144 -1170 5256 88 11 49 chr9 2076096 2077128 -140194316 + L1MA3 LINE L1 4182 6287 -18 5256 102 13 45 chr9 2077128 2077857 -140193587 + L1MA3 LINE L1 5423 6119 -186 2618 64 0 10 chr9 2077857 2078171 -140193273 + AluY SINE Alu 1 311 0 5256 102 13 45 chr9 2078171 2078352 -140193092 + L1MA3 LINE L1 6119 6304 -1 5256 88 11 49 chr9 2078352 2078370 -140193074 + L1MA3 LINE L1 6287 6304 -1 25 0 0 0 chr9 2078392 2078417 -140193027 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 2078583 2078608 -140192836 + AT_rich Low_complexity Low_complexity 1 25 0 1020 160 0 0 chr9 2078608 2078752 -140192692 - AluSg/x SINE Alu -23 287 144 2507 79 0 3 chr9 2081334 2081638 -140189806 + AluY SINE Alu 1 303 -8 1135 146 0 6 chr9 2081638 2081809 -140189635 + AluSp SINE Alu 134 303 -10 276 165 21 62 chr9 2082260 2082357 -140189087 + (CAGAGA)n Simple_repeat Simple_repeat 6 98 0 2383 88 0 0 chr9 2091066 2091363 -140180081 + AluSg SINE Alu 1 297 -13 23 54 0 0 chr9 2091379 2091416 -140180028 + AT_rich Low_complexity Low_complexity 1 37 0 1974 141 39 33 chr9 2091440 2091802 -140179642 - THE1B LTR MaLR 0 364 1 311 0 26 0 chr9 2092773 2092812 -140178632 + (TG)n Simple_repeat Simple_repeat 2 41 0 604 292 23 88 chr9 2093364 2093795 -140177649 + L2 LINE L2 2649 3054 -218 940 215 21 0 chr9 2093804 2093990 -140177454 - MER58A DNA MER1_type 0 224 35 295 241 38 13 chr9 2094119 2094198 -140177246 + L2 LINE L2 3225 3305 -8 237 65 0 0 chr9 2094273 2094304 -140177140 + (TG)n Simple_repeat Simple_repeat 1 31 0 227 79 26 0 chr9 2094304 2094342 -140177102 + (GA)n Simple_repeat Simple_repeat 2 40 0 1869 203 29 61 chr9 2094468 2094738 -140176706 + L1MA9 LINE L1 5832 6109 -203 2632 49 0 3 chr9 2094738 2095042 -140176402 + AluY SINE Alu 1 303 -8 1869 203 29 61 chr9 2095042 2095217 -140176227 + L1MA9 LINE L1 6109 6262 -50 1854 166 0 7 chr9 2095217 2095506 -140175938 - AluJo SINE Alu -25 287 1 1869 203 29 61 chr9 2095506 2095551 -140175893 + L1MA9 LINE L1 6262 6307 -5 21 36 0 0 chr9 2095560 2095588 -140175856 + AT_rich Low_complexity Low_complexity 1 28 0 456 312 133 48 chr9 2095697 2096072 -140175372 - MLT1K LTR MaLR -33 555 149 245 279 58 0 chr9 2099271 2099375 -140172069 + MIR SINE MIR 29 138 -124 185 189 0 0 chr9 2099376 2099413 -140172031 + L2 LINE L2 3213 3249 -23 236 241 69 103 chr9 2100072 2100127 -140171317 - MLT1C LTR MaLR -15 452 397 1961 66 0 0 chr9 2100127 2100383 -140171061 + L1PA5 LINE L1 5898 6153 -1 236 241 69 103 chr9 2100383 2100501 -140170943 - MLT1C LTR MaLR -70 397 285 231 235 69 39 chr9 2100548 2100650 -140170794 - MLT1C LTR MaLR -273 194 90 1068 222 28 131 chr9 2101585 2102044 -140169400 - MLT2D LTR ERVL 0 414 3 538 26 26 93 chr9 2102166 2102359 -140169085 + (TA)n Simple_repeat Simple_repeat 1 180 0 324 252 52 102 chr9 2102363 2102736 -140168708 - L1MC5 LINE L1 -204 8037 1980 440 169 0 0 chr9 2103300 2103377 -140168067 + MLT1F1 LTR MaLR 491 567 0 2235 78 58 3 chr9 2104826 2105121 -140166323 + AluY SINE Alu 1 311 0 314 251 115 20 chr9 2105275 2105393 -140166051 - MIR SINE MIR -46 162 33 2206 246 46 26 chr9 2107345 2107477 -140163967 + MER67C LTR ERV1 1 129 -581 2179 103 13 3 chr9 2107477 2107779 -140163665 - AluSc SINE Alu -4 305 1 2206 246 46 26 chr9 2107779 2108342 -140163102 + MER67C LTR ERV1 129 710 0 668 195 157 5 chr9 2109389 2109599 -140161845 + MLT1D LTR MaLR 107 348 -157 234 245 28 56 chr9 2111826 2111969 -140159475 + CT-rich Low_complexity Low_complexity 3 141 0 208 239 15 15 chr9 2113281 2113348 -140158096 + CT-rich Low_complexity Low_complexity 1 67 0 2274 116 7 3 chr9 2113722 2114137 -140157307 + AluSq SINE Alu 1 416 0 1072 101 12 0 chr9 2114150 2114319 -140157125 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 288 0 0 0 chr9 2114323 2114355 -140157089 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 603 315 0 28 chr9 2115445 2115623 -140155821 + MLT1G1 LTR MaLR 1 173 -422 744 269 14 5 chr9 2115768 2115980 -140155464 + MLT1G1 LTR MaLR 176 389 -206 2397 261 92 8 chr9 2119978 2120730 -140150714 - MER21B LTR ERV1 0 863 49 292 294 0 0 chr9 2120741 2120809 -140150635 - MER21B LTR ERV1 -777 86 19 317 244 37 0 chr9 2120922 2121004 -140150440 + MLT1E2 LTR MaLR 124 208 -418 261 259 0 0 chr9 2121326 2121384 -140150060 + MARNA DNA Mariner 436 493 -93 351 0 0 0 chr9 2123025 2123064 -140148380 + (TTA)n Simple_repeat Simple_repeat 2 40 0 412 234 43 0 chr9 2123189 2123283 -140148161 + MIR SINE MIR 87 184 -78 663 241 0 0 chr9 2123301 2123438 -140148006 + L1MD1 LINE L1 5599 5735 -507 1702 221 48 0 chr9 2123441 2123792 -140147652 - MER74A LTR ERVL 0 558 191 3370 137 101 51 chr9 2123792 2124594 -140146850 + MER21A LTR ERV1 1 915 -16 738 184 61 31 chr9 2124635 2124798 -140146646 - MER74A LTR ERVL -390 168 1 507 138 43 11 chr9 2124802 2124896 -140146548 + L1MD1 LINE L1 5764 5860 -499 471 233 153 25 chr9 2124907 2125070 -140146374 + L1MD1 LINE L1 5992 6175 -67 5221 167 58 28 chr9 2125175 2125627 -140145817 - L1M2 LINE L1 -819 5493 5056 1705 27 0 0 chr9 2125627 2125811 -140145633 - AluY SINE Alu -127 184 1 5221 167 58 28 chr9 2125811 2125901 -140145543 - L1M2 LINE L1 -1256 5056 4970 2281 171 17 2 chr9 2125901 2126323 -140145121 - MSTC LTR MaLR 0 428 1 5221 167 58 28 chr9 2126323 2126775 -140144669 - L1M2 LINE L1 -1342 4970 4533 2246 113 7 0 chr9 2126775 2127076 -140144368 - AluSq SINE Alu -10 303 1 5221 167 58 28 chr9 2127076 2127452 -140143992 - L1M2 LINE L1 -1779 4533 3998 310 275 50 33 chr9 2127606 2127726 -140143718 - L1MEd LINE L1 -5298 821 700 33637 52 6 3 chr9 2127902 2132305 -140139139 - L1P LINE L1 -1316 4830 414 198 24 24 49 chr9 2132379 2132420 -140139024 + (TA)n Simple_repeat Simple_repeat 1 40 0 440 302 9 0 chr9 2132553 2132659 -140138785 + MIR SINE MIR 45 151 -111 461 233 74 5 chr9 2132660 2132823 -140138621 + MER63 DNA MER1_type 1 1656 -32 387 282 0 27 chr9 2132825 2132935 -140138509 + MIR SINE MIR 156 262 0 231 190 0 0 chr9 2133091 2133149 -140138295 + T-rich Low_complexity Low_complexity 1 58 0 2815 169 5 46 chr9 2134026 2134616 -140136828 - L1MB3 LINE L1 -177 6006 5441 240 111 0 0 chr9 2138348 2138384 -140133060 + (A)n Simple_repeat Simple_repeat 1 36 0 667 270 61 22 chr9 2139384 2139614 -140131830 - MIR SINE MIR -16 246 8 241 322 34 93 chr9 2142509 2142832 -140128612 - L2 LINE L2 -7 3265 2962 487 264 31 8 chr9 2143899 2144028 -140127416 + MLT1I LTR MaLR 104 235 -174 288 0 0 0 chr9 2144405 2144437 -140127007 + (A)n Simple_repeat Simple_repeat 1 32 0 332 358 129 29 chr9 2144691 2144970 -140126474 + L2 LINE L2 2966 3272 0 435 331 121 30 chr9 2145333 2145839 -140125605 + L1ME3 LINE L1 5341 5915 -255 2426 78 0 0 chr9 2145858 2146152 -140125292 - AluSg SINE Alu -15 295 2 200 216 59 0 chr9 2146584 2146635 -140124809 - L2 LINE L2 -2 3311 3258 189 300 133 11 chr9 2146836 2146926 -140124518 - MIR SINE MIR -25 237 137 430 298 34 0 chr9 2147053 2147209 -140124235 - MER20B DNA MER1_type -23 196 30 199 290 93 65 chr9 2150247 2150354 -140121090 - L2 LINE L2 -4 3309 3200 1950 166 132 3 chr9 2150453 2150832 -140120612 + MSTA LTR MaLR 1 428 0 253 363 98 0 chr9 2150966 2151068 -140120376 - MIR3 SINE MIR -3 205 94 520 216 11 58 chr9 2151788 2151978 -140119466 - L1MDb LINE L1 -2125 3955 3775 483 167 79 18 chr9 2151975 2152089 -140119355 - L1MB3 LINE L1 -2 6181 6061 * 999 156 6 6 chr9 2152129 2152309 -140119135 - L1MB3 LINE L1 -89 6094 5915 3652 239 60 19 chr9 2152310 2152656 -140118788 - L1MDb LINE L1 -2292 3788 3458 2072 134 0 0 chr9 2152656 2152946 -140118498 + AluSx SINE Alu 3 292 -20 3652 239 60 19 chr9 2152946 2153790 -140117654 - L1MDb LINE L1 -2622 3458 2549 576 268 40 30 chr9 2153772 2154192 -140117252 - L1MDb LINE L1 -5178 892 463 * 250 277 89 9 chr9 2154332 2154444 -140117000 - L1MDb LINE L1 -5683 387 267 2549 44 0 3 chr9 2155236 2155529 -140115915 - AluY SINE Alu -15 296 5 202 333 50 20 chr9 2155666 2155867 -140115577 - L3 LINE CR1 -60 1517 1311 552 260 40 0 chr9 2155920 2156093 -140115351 + MER68 LTR ERV1 1 180 -382 405 200 124 119 chr9 2156128 2156338 -140115106 + MER68 LTR ERV1 351 603 -2 3288 200 64 9 chr9 2157300 2158228 -140113216 + L1M3 LINE L1 4509 5485 -698 186 229 180 16 chr9 2158644 2158766 -140112678 + L2 LINE L2 2910 3051 -262 330 196 0 0 chr9 2158998 2159090 -140112354 + (TGGA)n Simple_repeat Simple_repeat 1 92 0 578 260 25 51 chr9 2160033 2160229 -140111215 + MIR3 SINE MIR 14 204 -4 2430 93 3 6 chr9 2161980 2162292 -140109152 - AluSp SINE Alu -2 311 1 231 36 0 0 chr9 2162355 2162383 -140109061 + (CA)n Simple_repeat Simple_repeat 2 29 0 282 273 52 0 chr9 2162898 2162975 -140108469 + MER5A DNA MER1_type 5 85 -104 232 277 9 9 chr9 2163053 2163165 -140108279 + (CA)n Simple_repeat Simple_repeat 2 113 0 1410 189 0 26 chr9 2163482 2163772 -140107672 + AluJo SINE Alu 25 307 0 262 302 148 16 chr9 2163910 2164099 -140107345 - MIR SINE MIR -26 236 23 663 262 102 44 chr9 2166445 2166789 -140104655 + MLT1B LTR MaLR 1 364 -26 617 264 39 14 chr9 2167227 2167435 -140104009 + MLT1A1 LTR MaLR 153 365 0 237 209 75 0 chr9 2167697 2167764 -140103680 - MLT1J LTR MaLR -341 170 99 27 29 0 0 chr9 2170651 2170685 -140100759 + AT_rich Low_complexity Low_complexity 1 34 0 71 106 0 0 chr9 2170767 2170908 -140100536 + AT_rich Low_complexity Low_complexity 1 141 0 319 258 57 69 chr9 2173939 2174098 -140097346 + MIR SINE MIR 98 254 -8 449 141 0 0 chr9 2174197 2174268 -140097176 - THE1B LTR MaLR 0 375 305 7250 52 2 1 chr9 2174269 2175280 -140096164 + L1PA5 LINE L1 5132 6148 -6 26 0 0 0 chr9 2175514 2175540 -140095904 + AT_rich Low_complexity Low_complexity 1 26 0 1895 117 9 37 chr9 2175540 2175864 -140095580 - THE1B LTR MaLR -49 315 1 314 344 0 0 chr9 2176044 2176134 -140095310 + L1MC4 LINE L1 6614 6703 -1339 306 352 0 0 chr9 2176066 2176154 -140095290 - L1MC4 LINE L1 -1339 6703 6616 * 210 246 0 0 chr9 2176166 2176227 -140095217 + (TA)n Simple_repeat Simple_repeat 1 61 0 353 39 19 0 chr9 2176228 2176280 -140095164 - MLT2A1 LTR ERVL -391 53 1 3054 74 0 7 chr9 2176345 2176358 -140095086 - MLT2A1 LTR ERVL -40 404 392 336 102 0 0 chr9 2176358 2176407 -140095037 + (TG)n Simple_repeat Simple_repeat 2 50 0 3054 74 0 7 chr9 2176407 2176800 -140094644 - MLT2A1 LTR ERVL -52 392 1 1953 159 49 138 chr9 2176800 2177459 -140093985 + LTR8A LTR ERV1 128 727 0 688 231 30 12 chr9 2177736 2177905 -140093539 + MER69A DNA AcHobo 3 174 -3 288 340 50 70 chr9 2178143 2178402 -140093042 + MIR SINE MIR 3 256 -6 387 351 57 19 chr9 2178550 2178812 -140092632 + MLT1J LTR MaLR 153 424 -87 835 191 26 0 chr9 2178825 2178977 -140092467 - MER5A DNA MER1_type -30 159 4 290 205 12 12 chr9 2178980 2179063 -140092381 + MLT1J LTR MaLR 416 498 -13 269 188 0 0 chr9 2179159 2179207 -140092237 - L2 LINE L2 -3 3310 3263 808 176 79 0 chr9 2179394 2179559 -140091885 - MER5B DNA MER1_type 0 178 1 204 210 222 12 chr9 2179570 2179651 -140091793 - MIR SINE MIR -90 118 21 355 292 136 33 chr9 2180046 2180289 -140091155 - L3 LINE CR1 -2 1575 1308 1386 271 61 67 chr9 2180941 2181661 -140089783 - MER21B LTR ERV1 -124 739 24 871 302 120 35 chr9 2182099 2182592 -140088852 - L3 LINE CR1 -78 1499 965 322 242 65 81 chr9 2182878 2183002 -140088442 + MLT1K LTR MaLR 380 501 -87 876 296 95 5 chr9 2183002 2183381 -140088063 - MER95 LTR ERV 0 431 19 581 290 54 67 chr9 2183389 2183720 -140087724 - MER89-int LTR ERV1 -479 7337 7011 404 190 13 0 chr9 2183925 2184004 -140087440 + Tigger5 DNA MER2_type 1 80 -2243 320 217 43 0 chr9 2184004 2184073 -140087371 - Tigger5 DNA MER2_type -5 2318 2247 284 262 0 36 chr9 2184069 2184153 -140087291 + Tigger5 DNA MER2_type 2243 2323 0 * 297 0 0 0 chr9 2185220 2185253 -140086191 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1501 162 68 54 chr9 2185258 2185536 -140085908 - AluJo SINE Alu -30 282 1 846 299 39 82 chr9 2185780 2187157 -140084287 - MER89-int LTR ERV1 -1390 6147 2017 276 225 87 69 chr9 2187280 2187453 -140083991 - MER89-int LTR ERV1 -1799 3155 2980 2648 138 74 5 chr9 2187495 2187915 -140083529 - LTR47A LTR ERVL 0 452 4 233 69 0 0 chr9 2187915 2187944 -140083500 - LTR47A LTR ERVL -421 31 3 2502 68 3 3 chr9 2189116 2189426 -140082018 - AluY SINE Alu -1 310 1 408 316 13 19 chr9 2189608 2189763 -140081681 - MER89-int LTR ERV1 -5429 1372 1219 5797 141 21 25 chr9 2190056 2190813 -140080631 - L1PA15 LINE L1 -1 6164 5425 1911 149 0 17 chr9 2190813 2191141 -140080303 - AluSg SINE Alu 0 310 1 5797 141 21 25 chr9 2191141 2191549 -140079895 - L1PA15 LINE L1 -740 5425 5017 16585 143 11 26 chr9 2191557 2192802 -140078642 - L1PA10 LINE L1 0 6168 4906 2203 128 0 0 chr9 2192802 2193100 -140078344 + AluSx SINE Alu 1 298 -14 16585 143 11 26 chr9 2193100 2195434 -140076010 - L1PA10 LINE L1 -1262 4906 2640 722 192 0 8 chr9 2195435 2195555 -140075889 - THE1B LTR MaLR -7 357 239 856 314 116 16 chr9 2195586 2196019 -140075425 - L3 LINE CR1 -901 676 201 294 347 5 24 chr9 2196990 2197175 -140074269 + MIR SINE MIR 36 212 -50 1443 179 40 27 chr9 2197794 2198095 -140073349 + AluSx SINE Alu 1 305 -7 3702 147 47 66 chr9 2198309 2198881 -140072563 + LTR8A LTR ERV1 1 557 -170 1687 194 7 13 chr9 2198881 2199191 -140072253 + AluJb SINE Alu 1 308 -4 3702 147 47 66 chr9 2199191 2199359 -140072085 + LTR8A LTR ERV1 557 727 0 1103 228 72 79 chr9 2199663 2200082 -140071362 + L2 LINE L2 2636 3054 -259 1747 219 36 11 chr9 2200082 2200447 -140070997 + MLT1A2 LTR MaLR 1 374 0 1103 228 72 79 chr9 2200447 2200696 -140070748 + L2 LINE L2 3054 3303 -10 504 315 56 41 chr9 2200696 2200862 -140070582 - L1ME LINE L1 -404 5717 5555 1818 179 7 0 chr9 2200862 2201164 -140070280 + AluJb SINE Alu 1 304 -8 504 315 56 41 chr9 2201164 2201510 -140069934 - L1ME LINE L1 -566 5555 5200 289 319 40 36 chr9 2201670 2201918 -140069526 - L1ME LINE L1 -1124 5022 4774 2124 144 0 0 chr9 2202292 2202604 -140068840 - AluSx SINE Alu 0 312 1 2136 188 86 46 chr9 2202793 2202897 -140068547 - LTR49 LTR ERV1 0 595 497 2824 128 36 5 chr9 2202897 2203312 -140068132 + MSTA LTR MaLR 1 428 0 2136 188 86 46 chr9 2203312 2203767 -140067677 - LTR49 LTR ERV1 -98 497 14 2040 127 0 0 chr9 2203767 2204082 -140067362 - AluSx SINE Alu 0 315 1 1990 146 33 0 chr9 2204511 2204813 -140066631 - AluSx SINE Alu 0 312 1 187 41 41 122 chr9 2205140 2205189 -140066255 - MIR3 SINE MIR -32 176 132 2850 198 53 52 chr9 2205218 2205911 -140065533 + LTR8A LTR ERV1 34 727 0 308 236 28 47 chr9 2205950 2206056 -140065388 + L1MC4 LINE L1 7899 8002 -40 1304 171 19 27 chr9 2206199 2206321 -140065123 + MER34B LTR ERV1 1 122 -443 2734 152 130 11 chr9 2206321 2206529 -140064915 + LTR49 LTR ERV1 1 183 -412 249 33 0 0 chr9 2206529 2206559 -140064885 + (CA)n Simple_repeat Simple_repeat 2 31 0 2734 152 130 11 chr9 2206559 2206882 -140064562 + LTR49 LTR ERV1 183 595 0 1304 171 19 27 chr9 2206882 2207016 -140064428 + MER34B LTR ERV1 122 255 -310 2395 151 26 3 chr9 2207018 2207402 -140064042 - MER57A LTR ERV1 -3 400 8 289 91 23 0 chr9 2207403 2207447 -140063997 + MER34B LTR ERV1 251 295 -270 2684 179 33 81 chr9 2207581 2208224 -140063220 - LTR9 LTR ERV1 0 612 1 1537 170 44 11 chr9 2208224 2208494 -140062950 - AluJo SINE Alu -33 279 1 1434 124 21 8 chr9 2208966 2209196 -140062248 + MER34B LTR ERV1 303 535 -30 1438 194 112 57 chr9 2209196 2209635 -140061809 + LTR56 LTR ERV1 1 437 0 2266 191 91 117 chr9 2209782 2210527 -140060917 + LTR8A LTR ERV1 2 727 0 2984 142 47 40 chr9 2210975 2211560 -140059884 - LTR49 LTR ERV1 -3 650 1 2825 159 37 12 chr9 2211560 2212070 -140059374 - MER34C LTR ERV1 -24 561 39 2742 100 47 10 chr9 2212159 2212607 -140058837 + LTR56 LTR ERV1 6 437 0 2187 122 0 3 chr9 2212787 2213091 -140058353 - AluSg SINE Alu -7 303 1 848 229 92 42 chr9 2213185 2213425 -140058019 + MLT1B LTR MaLR 3 254 -136 9677 202 15 18 chr9 2213436 2215886 -140055558 - L1P4 LINE L1 -588 5578 3141 901 261 35 0 chr9 2216029 2216286 -140055158 + Charlie5 DNA MER1_type 2 267 -2345 197 65 32 0 chr9 2216287 2216318 -140055126 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 683 176 8 25 chr9 2216321 2216440 -140055004 - AluJb SINE Alu -194 118 2 1245 239 25 28 chr9 2216445 2216614 -140054830 + Charlie5 DNA MER1_type 256 425 -2199 1668 150 221 11 chr9 2216614 2216782 -140054662 - MSTA LTR MaLR 0 428 297 186 43 0 0 chr9 2216782 2216805 -140054639 + (GA)n Simple_repeat Simple_repeat 1 23 0 1668 150 221 11 chr9 2216805 2216989 -140054455 - MSTA LTR MaLR -131 297 2 1245 239 25 28 chr9 2216989 2217146 -140054298 + Charlie5 DNA MER1_type 425 581 -2043 1924 181 111 2 chr9 2217342 2217811 -140053633 + Charlie5 DNA MER1_type 924 1443 -1169 276 222 50 119 chr9 2218054 2218306 -140053138 - LTR37A LTR ERV1 -165 261 26 2449 124 55 6 chr9 2218306 2218653 -140052791 - THE1B LTR MaLR 0 364 1 2673 156 27 9 chr9 2218862 2219312 -140052132 - MER65C LTR ERV1 -2 459 2 2371 86 0 7 chr9 2219759 2220062 -140051382 + AluY SINE Alu 2 302 -9 268 167 21 0 chr9 2220108 2220156 -140051288 + MLT1E2 LTR MaLR 2 50 -604 2104 161 76 55 chr9 2220183 2220501 -140050943 + MER31A LTR ERV1 1 334 -151 2584 39 6 6 chr9 2220501 2220812 -140050632 - AluY SINE Alu 0 311 1 2104 161 76 55 chr9 2220812 2220965 -140050479 + MER31A LTR ERV1 334 482 -3 1569 214 122 57 chr9 2220974 2221450 -140049994 + MLT1E2 LTR MaLR 120 626 0 3836 110 15 19 chr9 2221547 2222073 -140049371 - MER1A DNA MER1_type -3 524 1 274 257 112 62 chr9 2222135 2222314 -140049130 - MIR SINE MIR -15 247 60 2052 175 77 44 chr9 2222370 2222822 -140048622 - MLT1C LTR MaLR 0 467 1 203 365 0 0 chr9 2223330 2223415 -140048029 - MIR SINE MIR -8 254 170 2429 86 0 0 chr9 2223632 2223933 -140047511 - AluSp SINE Alu -12 301 1 537 280 33 22 chr9 2224212 2224394 -140047050 - MIR SINE MIR -51 211 28 1906 249 50 21 chr9 2224503 2225024 -140046420 - MLT1F LTR MaLR 0 542 7 3843 131 24 15 chr9 2225026 2225615 -140045829 + LTR49 LTR ERV1 1 594 -1 267 208 10 146 chr9 2225872 2225968 -140045476 + MIR3 SINE MIR 96 178 -30 3349 130 45 2 chr9 2226049 2226540 -140044904 + MER41E LTR ERV1 1 512 0 211 321 38 38 chr9 2226576 2226707 -140044737 - MIR SINE MIR -58 150 20 232 250 17 0 chr9 2226785 2226845 -140044599 + (CTA)n Simple_repeat Simple_repeat 2 62 0 201 282 97 65 chr9 2226897 2227021 -140044423 - MIR SINE MIR -82 180 53 523 283 19 47 chr9 2227767 2227957 -140043487 - MIR SINE MIR -51 211 27 466 241 62 53 chr9 2227970 2228164 -140043280 - MIR SINE MIR -19 243 49 1461 231 89 100 chr9 2228234 2228533 -140042911 + L2 LINE L2 346 647 -2666 3643 158 82 32 chr9 2228533 2229225 -140042219 + LTR8A LTR ERV1 1 727 0 1461 231 89 100 chr9 2229225 2230004 -140041440 + L2 LINE L2 647 3308 -5 245 106 0 43 chr9 2230309 2230356 -140041088 + (CATA)n Simple_repeat Simple_repeat 1 45 0 243 216 0 54 chr9 2230357 2230407 -140041037 - L1MC4 LINE L1 -1342 6700 6654 1901 152 0 16 chr9 2230407 2230710 -140040734 - AluJo SINE Alu -6 306 9 243 216 0 54 chr9 2230710 2230733 -140040711 - L1MC4 LINE L1 -1388 6654 6631 605 292 11 11 chr9 2231402 2231580 -140039864 + MIR SINE MIR 8 185 -77 631 291 80 37 chr9 2231885 2232235 -140039209 - MLT1I LTR MaLR -38 371 7 268 326 121 7 chr9 2232304 2232445 -140038999 - MIR SINE MIR 0 262 106 1841 142 6 49 chr9 2232450 2232775 -140038669 + AluJb SINE Alu 1 311 -1 361 273 175 0 chr9 2232950 2233093 -140038351 + MER117 DNA MER1_type 4 171 -26 192 298 0 0 chr9 2233109 2233166 -140038278 + MIR SINE MIR 90 146 -62 2302 109 0 6 chr9 2233483 2233794 -140037650 - AluSx SINE Alu 0 312 4 801 302 67 27 chr9 2233935 2234263 -140037181 - LTR33 LTR ERVL -8 513 173 923 215 24 29 chr9 2235077 2235282 -140036162 - MER3 DNA MER1_type 0 209 6 413 294 123 0 chr9 2235446 2235616 -140035828 - MIR SINE MIR 0 262 72 232 234 62 0 chr9 2235620 2235684 -140035760 + MER116 DNA Mariner 11 78 -2 208 174 196 0 chr9 2235686 2235732 -140035712 - MIR SINE MIR -183 79 25 195 256 171 0 chr9 2235775 2235857 -140035587 + MIR SINE MIR 157 252 -10 761 111 151 58 chr9 2236459 2236599 -140034845 + MER53 DNA DNA 1 161 -28 1010 230 56 90 chr9 2236599 2236977 -140034467 + MLT1A1 LTR MaLR 1 365 0 761 111 151 58 chr9 2236977 2237008 -140034436 + MER53 DNA DNA 161 188 -1 753 212 35 6 chr9 2237174 2237344 -140034100 + MER5A DNA MER1_type 4 178 -11 413 306 50 25 chr9 2237354 2237514 -140033930 + MIR SINE MIR 25 188 -74 1042 204 37 28 chr9 2238049 2238265 -140033179 - MER20 DNA MER1_type -1 218 1 1026 203 20 15 chr9 2238375 2238603 -140032841 - AluJo SINE Alu 0 313 85 424 275 67 17 chr9 2238612 2238732 -140032712 - MIR SINE MIR -111 151 26 460 287 28 58 chr9 2239841 2240075 -140031369 + MIR SINE MIR 20 238 -24 221 311 59 42 chr9 2240079 2240198 -140031246 + MIR SINE MIR 106 226 -36 318 311 120 18 chr9 2240488 2240655 -140030789 + MER91B DNA MER1_type 1 184 -6 432 269 168 0 chr9 2240946 2241095 -140030349 + MIR SINE MIR 20 193 -69 22 0 0 0 chr9 2241117 2241139 -140030305 + AT_rich Low_complexity Low_complexity 1 22 0 1591 51 51 0 chr9 2241419 2241616 -140029828 - L1PA4 LINE L1 -2 6153 5947 2064 162 3 26 chr9 2241817 2242162 -140029282 - MER1B DNA MER1_type 0 337 1 327 257 95 19 chr9 2243210 2243315 -140028129 + MARNA DNA Mariner 66 178 -408 499 307 70 23 chr9 2243400 2243615 -140027829 + MARNA DNA Mariner 313 537 -49 423 264 75 87 chr9 2243943 2244498 -140026946 + LTR50 LTR ERVL 1 520 -3 351 221 75 29 chr9 2245738 2245895 -140025549 + MLT1H LTR MaLR 12 177 -334 385 245 47 63 chr9 2246004 2246190 -140025254 + MLT1H LTR MaLR 333 530 -19 125 81 0 0 chr9 2246216 2246546 -140024898 + AT_rich Low_complexity Low_complexity 1 300 0 111 89 0 0 chr9 2246550 2246843 -140024601 + AT_rich Low_complexity Low_complexity 1 293 0 566 277 135 31 chr9 2246987 2247276 -140024168 + L2 LINE L2 2995 3313 0 23 0 0 0 chr9 2247989 2248012 -140023432 + AT_rich Low_complexity Low_complexity 1 23 0 286 244 47 110 chr9 2248490 2248617 -140022827 - MIR3 SINE MIR -53 155 37 461 239 92 8 chr9 2249047 2249177 -140022267 + MIR SINE MIR 14 154 -108 215 326 76 22 chr9 2252073 2252165 -140019279 - L2 LINE L2 -44 3228 3132 819 284 47 0 chr9 2252589 2252825 -140018619 - L1MC/D LINE L1 -2045 5763 5517 496 263 56 15 chr9 2252828 2253074 -140018370 - L1MC/D LINE L1 -748 5398 5220 330 213 118 66 chr9 2253201 2253337 -140018107 - L1MC/D LINE L1 -1156 4990 4848 2085 142 0 16 chr9 2253675 2253985 -140017459 + AluSx SINE Alu 1 305 -7 2288 114 0 0 chr9 2254040 2254339 -140017105 - AluSx SINE Alu -13 299 1 264 299 123 75 chr9 2254577 2254634 -140016810 + L3 LINE CR1 1380 1433 -144 2899 89 5 5 chr9 2254634 2255014 -140016430 - L1PA8 LINE L1 -1 6171 5792 264 299 123 75 chr9 2255014 2255143 -140016301 + L3 LINE CR1 1433 1575 -2 301 211 132 0 chr9 2255488 2255564 -140015880 - MIR SINE MIR -75 187 102 189 74 0 0 chr9 2255595 2255622 -140015822 + (TTA)n Simple_repeat Simple_repeat 2 28 0 202 286 179 9 chr9 2255670 2255782 -140015662 + L2 LINE L2 3151 3281 -32 404 211 0 0 chr9 2255799 2255875 -140015569 + L1MD1 LINE L1 6156 6231 -11 262 177 39 21 chr9 2256065 2256138 -140015306 + MIR SINE MIR 91 169 -39 335 164 0 14 chr9 2256421 2256494 -140014950 + MER3 DNA MER1_type 96 167 -42 31 0 0 0 chr9 2256502 2256533 -140014911 + AT_rich Low_complexity Low_complexity 1 31 0 1549 188 7 24 chr9 2256533 2256825 -140014619 - AluJb SINE Alu -25 287 1 417 104 60 0 chr9 2256825 2256892 -140014552 + MER3 DNA MER1_type 139 209 0 191 319 149 11 chr9 2257772 2257866 -140013578 - MIR3 SINE MIR -47 161 55 395 269 41 58 chr9 2258172 2258343 -140013101 - MIR3 SINE MIR -25 183 16 24 0 0 0 chr9 2259463 2259487 -140011957 + AT_rich Low_complexity Low_complexity 1 24 0 628 284 38 38 chr9 2259892 2260156 -140011288 - MLT1J LTR MaLR -8 503 240 864 233 10 26 chr9 2260157 2260350 -140011094 + AluJo SINE Alu 122 311 -1 310 258 47 74 chr9 2260835 2261025 -140010419 - L1ME4a LINE L1 -2 6119 5935 3042 60 19 0 chr9 2261066 2261434 -140010010 - L1PA8 LINE L1 -7 6165 5791 564 283 30 18 chr9 2261805 2261971 -140009473 + MIR3 SINE MIR 34 201 -7 229 189 75 0 chr9 2262047 2262100 -140009344 + L2 LINE L2 3257 3313 0 322 292 62 59 chr9 2262208 2262356 -140009088 - L1M4 LINE L1 -1630 4516 4370 2028 138 0 10 chr9 2262356 2262654 -140008790 - AluSx SINE Alu -17 295 1 322 292 62 59 chr9 2262654 2262909 -140008535 - L1M4 LINE L1 -1776 4370 4112 869 265 73 83 chr9 2262914 2263441 -140008003 - L1M4 LINE L1 -996 5150 4632 1381 170 134 0 chr9 2263441 2263694 -140007750 - AluSx SINE Alu -25 287 1 869 265 73 83 chr9 2263694 2263948 -140007496 - L1M4 LINE L1 -1514 4632 4377 294 214 0 0 chr9 2263950 2264006 -140007438 + MLT1F1 LTR MaLR 3 58 -509 867 248 63 38 chr9 2264047 2264285 -140007159 + MLT1F1 LTR MaLR 50 293 -274 366 315 81 35 chr9 2264363 2264769 -140006675 - L1M4 LINE L1 -1757 4389 3965 411 21 0 0 chr9 2264783 2264831 -140006613 + (CA)n Simple_repeat Simple_repeat 2 49 0 308 313 15 37 chr9 2264839 2265002 -140006442 - L1ME4a LINE L1 -487 5634 5495 974 243 21 0 chr9 2265038 2265273 -140006171 - MIR SINE MIR 0 262 23 1438 195 47 0 chr9 2265275 2265552 -140005892 - AluJo SINE Alu -14 298 9 191 269 247 0 chr9 2265617 2265710 -140005734 - MIR SINE MIR -4 258 143 994 167 6 36 chr9 2265928 2266096 -140005348 - FRAM SINE Alu -3 163 1 500 307 98 19 chr9 2266158 2266373 -140005071 + MIR SINE MIR 20 251 -11 765 268 9 28 chr9 2266548 2266761 -140004683 - MIR SINE MIR -25 237 29 640 280 69 0 chr9 2267009 2267227 -140004217 + MIR SINE MIR 29 261 -1 258 244 144 11 chr9 2267793 2267883 -140003561 - MER5B DNA MER1_type -51 127 26 1047 171 15 20 chr9 2268563 2268762 -140002682 - AluJo SINE Alu -21 291 94 313 221 158 11 chr9 2268801 2268896 -140002548 + MIR3 SINE MIR 47 155 -53 255 297 30 20 chr9 2269700 2269801 -140001643 - MIR SINE MIR -50 212 111 34 0 0 0 chr9 2269990 2270024 -140001420 + AT_rich Low_complexity Low_complexity 1 34 0 1705 181 7 19 chr9 2270057 2270367 -140001077 - AluJo SINE Alu -6 306 1 200 244 22 0 chr9 2270375 2270420 -140001024 - MER5A DNA MER1_type -79 110 65 611 111 202 0 chr9 2270965 2271064 -140000380 + AluJb SINE Alu 182 300 -12 243 225 56 28 chr9 2271070 2271141 -140000303 + MER5A DNA MER1_type 117 189 0 1384 160 36 4 chr9 2272335 2272560 -139998884 - MER46A DNA MER2_type 0 236 5 321 276 43 9 chr9 2272766 2272882 -139998562 - MIR SINE MIR -48 214 95 800 219 48 28 chr9 2272905 2272979 -139998465 - L1MB4 LINE L1 -23 6157 6086 1487 122 5 0 chr9 2272979 2273184 -139998260 + AluSx SINE Alu 1 206 -106 800 219 48 28 chr9 2273184 2273396 -139998048 - L1MB4 LINE L1 -94 6086 5950 2701 23 0 0 chr9 2273706 2274005 -139997439 + AluY SINE Alu 3 301 -10 1858 130 38 17 chr9 2274103 2274395 -139997049 - AluJb SINE Alu -14 298 1 327 49 0 0 chr9 2274427 2274468 -139996976 + (CA)n Simple_repeat Simple_repeat 2 42 0 308 267 10 20 chr9 2274949 2275050 -139996394 + MIR SINE MIR 150 249 -13 370 237 51 70 chr9 2275141 2275171 -139996273 - MIR SINE MIR -102 160 131 333 0 0 0 chr9 2275171 2275208 -139996236 + (TG)n Simple_repeat Simple_repeat 2 38 0 370 237 51 70 chr9 2275208 2275333 -139996111 - MIR SINE MIR -131 131 8 2143 132 0 0 chr9 2275886 2276181 -139995263 + AluSx SINE Alu 1 295 -17 2381 164 10 10 chr9 2277794 2278183 -139993261 + MLT1B LTR MaLR 1 389 -1 2219 125 3 0 chr9 2279250 2279554 -139991890 + AluSp SINE Alu 1 305 -8 1753 246 87 24 chr9 2279579 2280120 -139991324 - MER90 LTR ERV1 0 575 1 213 167 42 0 chr9 2281137 2281185 -139990259 + CT-rich Low_complexity Low_complexity 3 52 0 180 77 0 0 chr9 2281430 2281456 -139989988 + (T)n Simple_repeat Simple_repeat 1 26 0 2086 121 20 0 chr9 2282457 2282755 -139988689 + AluSx SINE Alu 1 304 -8 327 203 0 0 chr9 2282755 2282824 -139988620 + (TA)n Simple_repeat Simple_repeat 2 70 0 276 30 0 0 chr9 2282824 2282857 -139988587 + (CA)n Simple_repeat Simple_repeat 2 34 0 492 260 0 0 chr9 2282965 2283065 -139988379 - MER58B DNA MER1_type 0 341 242 472 153 0 14 chr9 2283111 2283183 -139988261 + AluSg/x SINE Alu 86 156 -154 532 160 180 82 chr9 2283194 2283388 -139988056 - MER58B DNA MER1_type -128 213 1 315 313 53 33 chr9 2283421 2283571 -139987873 - L1MC4a LINE L1 -1845 5963 5811 915 197 0 38 chr9 2283643 2283826 -139987618 - AluJb SINE Alu -3 309 134 1969 130 3 10 chr9 2283826 2284127 -139987317 - AluSx SINE Alu -13 299 1 274 351 0 0 chr9 2284129 2284243 -139987201 - L1MC4a LINE L1 -379 5742 5629 336 278 41 0 chr9 2284899 2284996 -139986448 + MIR3 SINE MIR 96 196 -12 238 292 29 109 chr9 2285020 2285107 -139986337 + L2 LINE L2 3146 3220 -52 1638 169 14 27 chr9 2285107 2285402 -139986042 + AluJo SINE Alu 1 291 -21 238 292 29 109 chr9 2285402 2285451 -139985993 + L2 LINE L2 3220 3271 -1 722 285 94 84 chr9 2285500 2286083 -139985361 + MLT1L LTR MaLR 19 607 -8 2388 83 0 0 chr9 2287052 2287354 -139984090 + AluY SINE Alu 1 302 -9 302 291 127 63 chr9 2287821 2287979 -139983465 + MIR SINE MIR 20 187 -75 563 323 96 27 chr9 2288004 2288084 -139983360 - L2 LINE L2 0 3272 3199 1973 159 0 3 chr9 2288084 2288386 -139983058 + AluSx SINE Alu 1 301 -11 563 323 96 27 chr9 2288386 2288711 -139982733 - L2 LINE L2 -73 3199 2839 2446 89 0 0 chr9 2288733 2289035 -139982409 + AluSc SINE Alu 1 302 -7 183 330 8 93 chr9 2289047 2289165 -139982279 - MIR SINE MIR -126 136 29 298 263 61 35 chr9 2291192 2291306 -139980138 + L2 LINE L2 3197 3313 0 2697 145 20 57 chr9 2291523 2292068 -139979376 + L1MB4 LINE L1 5655 6179 -1 506 338 32 18 chr9 2292160 2292379 -139979065 + MIR SINE MIR 29 250 -12 2815 110 0 3 chr9 2292495 2292860 -139978584 - THE1B LTR MaLR 0 364 1 503 231 59 117 chr9 2293201 2293673 -139977771 - HAL1 LINE L1 -32 2475 2031 2313 250 80 57 chr9 2293678 2294792 -139976652 - HAL1 LINE L1 -838 1669 530 313 298 43 27 chr9 2294942 2295130 -139976314 + L1ME4a LINE L1 5725 5915 -206 2267 108 3 0 chr9 2295576 2295873 -139975571 - AluY SINE Alu -13 298 1 509 317 54 32 chr9 2295881 2296253 -139975191 - L1M4 LINE L1 -2055 4091 3712 3797 152 17 2 chr9 2296355 2296934 -139974510 - L1PA15 LINE L1 0 6165 5578 977 233 49 0 chr9 2296962 2297207 -139974237 + L1M4 LINE L1 2476 2732 -3414 3224 245 33 16 chr9 2297210 2298129 -139973315 - L1M4 LINE L1 -1694 4452 3519 2211 107 3 7 chr9 2298644 2298944 -139972500 + AluSg SINE Alu 1 299 -11 437 341 29 39 chr9 2299625 2299830 -139971614 - MIR SINE MIR -58 204 2 2312 109 69 29 chr9 2300801 2301151 -139970293 - THE1B LTR MaLR 0 364 1 11275 102 2 81 chr9 2301151 2302865 -139968579 - THE1B-int LTR MaLR 0 1580 1 2380 125 43 14 chr9 2302867 2303219 -139968225 - THE1B LTR MaLR -2 362 1 375 247 58 39 chr9 2303808 2303962 -139967482 - L2 LINE L2 -202 3070 2914 221 114 45 0 chr9 2305433 2305477 -139965967 + T-rich Low_complexity Low_complexity 2 47 0 207 265 20 0 chr9 2305646 2305695 -139965749 + L3 LINE CR1 1526 1575 -2 905 289 141 18 chr9 2306307 2306977 -139964467 + L2 LINE L2 2563 3308 -5 180 0 0 0 chr9 2307880 2307900 -139963544 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 187 297 164 16 chr9 2307937 2308065 -139963379 - MIR SINE MIR -50 212 66 236 273 141 41 chr9 2309648 2309769 -139961675 + MIR SINE MIR 112 244 -18 289 289 193 15 chr9 2310134 2310269 -139961175 - MIR SINE MIR -22 240 82 252 0 0 0 chr9 2311884 2311912 -139959532 + (T)n Simple_repeat Simple_repeat 1 28 0 1027 84 30 0 chr9 2312412 2312543 -139958901 - AluJb SINE Alu -177 135 1 934 192 34 0 chr9 2313709 2313886 -139957558 - MER5A DNA MER1_type 0 189 7 213 290 68 91 chr9 2318911 2319012 -139952432 - L2 LINE L2 -554 2760 2663 1750 165 42 93 chr9 2319012 2319177 -139952267 + MLT1B LTR MaLR 1 173 -217 2136 117 0 0 chr9 2319177 2319468 -139951976 + AluSx SINE Alu 15 305 -7 1750 165 42 93 chr9 2319468 2319709 -139951735 + MLT1B LTR MaLR 173 386 -4 213 290 68 91 chr9 2319709 2319783 -139951661 - L2 LINE L2 -651 2663 2589 2475 65 6 37 chr9 2324386 2324709 -139946735 + AluSq SINE Alu 1 313 0 1757 188 36 36 chr9 2329401 2329762 -139941682 + MLT1A1 LTR MaLR 1 361 -4 524 221 44 0 chr9 2330111 2330224 -139941220 + MER94 DNA DNA 1 118 -16 189 0 0 0 chr9 2330865 2330886 -139940558 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2455 71 0 7 chr9 2330886 2331195 -139940249 - AluY SINE Alu -4 307 1 757 304 24 0 chr9 2333571 2333778 -139937666 + MLT1J LTR MaLR 70 281 -230 333 0 0 0 chr9 2335766 2335803 -139935641 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr9 2335802 2335823 -139935621 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 4601 157 29 8 chr9 2336993 2338106 -139933338 - L1MA4A LINE L1 -6 6150 5062 2120 133 10 0 chr9 2338761 2339070 -139932374 + AluSq SINE Alu 1 312 -1 529 272 108 15 chr9 2339233 2339428 -139932016 - MIR SINE MIR -35 227 15 787 181 29 103 chr9 2339634 2339838 -139931606 - MER5A DNA MER1_type 0 189 1 2308 87 0 7 chr9 2340972 2341272 -139930172 - AluSg SINE Alu -12 298 1 273 339 111 35 chr9 2341686 2341857 -139929587 + L2 LINE L2 3082 3265 -7 2207 134 61 9 chr9 2342405 2342748 -139928696 + MER46B DNA MER2_type 1 236 0 198 355 16 0 chr9 2343825 2343887 -139927557 - L3 LINE CR1 -1460 117 55 225 0 0 0 chr9 2346677 2346702 -139924742 + (CCG)n Simple_repeat Simple_repeat 1 25 0 307 286 24 0 chr9 2346739 2346823 -139924621 + G-rich Low_complexity Low_complexity 2 87 0 205 122 0 41 chr9 2346935 2346984 -139924460 + (GGGGA)n Simple_repeat Simple_repeat 5 51 0 23 33 0 0 chr9 2347103 2347133 -139924311 + GC_rich Low_complexity Low_complexity 1 30 0 251 366 24 0 chr9 2349098 2349180 -139922264 + MIR SINE MIR 65 148 -60 194 336 181 0 chr9 2349491 2349607 -139921837 - L2 LINE L2 0 3272 3136 708 265 45 9 chr9 2349782 2350005 -139921439 + MLT1I LTR MaLR 39 269 -140 791 255 82 0 chr9 2350079 2350263 -139921181 + MER58C DNA MER1_type 2 200 -15 351 193 121 12 chr9 2350304 2350387 -139921057 + MLT1I LTR MaLR 318 409 0 1610 161 23 33 chr9 2350771 2351076 -139920368 + AluJb SINE Alu 1 302 -10 342 339 3 7 chr9 2351214 2351348 -139920096 - MER5A DNA MER1_type -43 146 1 1123 159 74 0 chr9 2351774 2351950 -139919494 - MER5A DNA MER1_type 0 189 1 454 342 79 33 chr9 2352002 2352394 -139919050 + MLT1K LTR MaLR 162 571 -17 920 232 32 41 chr9 2352763 2352983 -139918461 + MER20B DNA MER1_type 2 219 0 845 249 92 9 chr9 2354201 2354418 -139917026 + MIR SINE MIR 2 236 -26 565 247 45 32 chr9 2354486 2354640 -139916804 + MER5B DNA MER1_type 3 158 -20 2405 97 3 0 chr9 2355499 2355809 -139915635 + AluSx SINE Alu 1 311 -1 5246 139 19 1 chr9 2356695 2357493 -139913951 + L1MA4A LINE L1 5486 6297 -6 1445 161 24 69 chr9 2358749 2359084 -139912360 - L1MA7 LINE L1 -2 6289 5970 2209 93 0 42 chr9 2359089 2359401 -139912043 - AluSx SINE Alu -13 299 1 367 303 8 8 chr9 2361324 2361443 -139910001 + MIR SINE MIR 32 150 -112 1564 233 81 40 chr9 2362026 2362558 -139908886 - MER20B DNA MER1_type -1 782 229 1289 172 19 34 chr9 2362612 2362880 -139908564 - AluJo SINE Alu -7 305 42 415 225 78 56 chr9 2362884 2363026 -139908418 - MER20B DNA MER1_type -608 175 31 473 294 73 14 chr9 2363417 2363547 -139907897 + MIR SINE MIR 18 168 -94 1572 213 96 0 chr9 2363547 2363880 -139907564 - MLT1A1 LTR MaLR 0 365 1 473 294 73 14 chr9 2363880 2363967 -139907477 + MIR SINE MIR 168 248 -14 5065 105 1 7 chr9 2364029 2364716 -139906728 - L1PA13 LINE L1 -13 6150 5468 280 295 18 18 chr9 2366198 2366310 -139905134 - L1ME4a LINE L1 -48 6073 5962 836 193 0 0 chr9 2366351 2366491 -139904953 + FRAM SINE Alu 1 140 -36 2192 106 0 3 chr9 2367124 2367416 -139904028 - AluSx SINE Alu -21 291 1 189 154 51 0 chr9 2367585 2367624 -139903820 + L2 LINE L2 184 224 -3090 300 234 0 64 chr9 2368823 2368917 -139902527 + CT-rich Low_complexity Low_complexity 1 88 0 306 125 0 0 chr9 2370054 2370102 -139901342 + (TCC)n Simple_repeat Simple_repeat 1 48 0 1923 173 3 0 chr9 2370102 2370408 -139901036 - AluJb SINE Alu -5 307 1 316 274 121 40 chr9 2371083 2371245 -139900199 + MIR SINE MIR 16 179 -56 209 312 184 32 chr9 2371354 2371572 -139899872 + MIR SINE MIR 11 261 -1 28 0 0 0 chr9 2373103 2373131 -139898313 + AT_rich Low_complexity Low_complexity 1 28 0 260 235 176 15 chr9 2373349 2373553 -139897891 - L1ME4a LINE L1 -4 6117 5881 235 332 161 10 chr9 2373699 2373868 -139897576 - L1ME4a LINE L1 -452 5669 5466 507 253 11 79 chr9 2373868 2374058 -139897386 + MER5B DNA MER1_type 1 177 -1 235 332 161 10 chr9 2374058 2374081 -139897363 - L1ME4a LINE L1 -655 5466 5448 470 305 78 38 chr9 2374902 2375272 -139896172 + MLT1J LTR MaLR 108 492 -19 2036 171 28 104 chr9 2375516 2375979 -139895465 + MSTB1 LTR MaLR 1 428 -4 9590 173 40 7 chr9 2375983 2377581 -139893863 + MSTB-int LTR MaLR 1 1651 0 2286 188 39 12 chr9 2377581 2377996 -139893448 + MSTB LTR MaLR 1 426 0 2236 153 5 16 chr9 2379184 2379556 -139891888 - L1PB1 LINE L1 -2 6149 5782 463 174 23 0 chr9 2379556 2379642 -139891802 + L1PB1 LINE L1 5777 5864 -287 305 151 0 0 chr9 2379655 2379708 -139891736 - L1PB1 LINE L1 -595 5556 5504 556 143 0 17 chr9 2379708 2379827 -139891617 + (TA)n Simple_repeat Simple_repeat 1 117 0 15366 193 27 7 chr9 2379827 2382452 -139888992 - L1P5 LINE L1 -360 6507 3936 207 0 0 0 chr9 2382452 2382475 -139888969 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 15366 193 27 7 chr9 2382475 2385443 -139886001 - L1P5 LINE L1 -2931 3936 653 259 184 126 23 chr9 2385584 2385671 -139885773 + MLT1A2 LTR MaLR 1 96 -278 402 21 0 0 chr9 2386014 2386061 -139885383 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 356 250 156 19 chr9 2387303 2387463 -139883981 - L1ME3A LINE L1 0 6170 5989 370 278 42 75 chr9 2387523 2387567 -139883877 - L1MEc LINE L1 -4869 1393 1349 3098 80 22 59 chr9 2387567 2388028 -139883416 - MLT2A1 LTR ERVL 0 444 1 370 278 42 75 chr9 2388028 2388518 -139882926 - L1MEc LINE L1 -4913 1349 928 2440 69 0 0 chr9 2388470 2388830 -139882614 - AluY SINE Alu -5 306 1 342 184 51 20 chr9 2389111 2389209 -139882235 - L1MC5 LINE L1 -30 7931 7831 389 351 121 4 chr9 2389221 2389469 -139881975 - L1MEc LINE L1 -5292 827 551 762 282 194 5 chr9 2390050 2390462 -139880982 + LTR33A LTR ERVL 5 494 -29 429 301 21 43 chr9 2391527 2391713 -139879731 + MIR SINE MIR 11 192 -70 1456 204 29 50 chr9 2393092 2393474 -139877970 - MLT1A2 LTR MaLR 0 374 1 635 178 0 75 chr9 2393556 2393702 -139877742 - AluJo/FRAM SINE Alu -3 309 175 317 183 56 14 chr9 2393702 2393773 -139877671 - Alu SINE Alu -251 52 2 507 279 161 43 chr9 2394229 2394576 -139876868 + L2 LINE L2 2924 3311 -2 224 266 164 31 chr9 2394588 2394716 -139876728 - MIR SINE MIR -66 196 52 2242 120 0 7 chr9 2394982 2395281 -139876163 - AluSx SINE Alu -15 297 1 2094 131 108 10 chr9 2396264 2396652 -139874792 + MSTB LTR MaLR 1 426 0 1879 199 14 0 chr9 2396913 2397284 -139874160 + MLT1B LTR MaLR 15 390 0 264 276 0 0 chr9 2397483 2397541 -139873903 - L2 LINE L2 -2 3270 3213 381 22 0 0 chr9 2398309 2398355 -139873089 - MLT2C1 LTR ERVL 0 515 470 1158 122 0 0 chr9 2398356 2398536 -139872908 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 258 0 43 chr9 2398546 2398732 -139872712 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 405 0 0 0 chr9 2398733 2398778 -139872666 + (TG)n Simple_repeat Simple_repeat 1 45 0 1665 193 15 9 chr9 2398816 2399153 -139872291 - MLT2C1 LTR ERVL -58 339 1 405 309 11 56 chr9 2399245 2399423 -139872021 - L3 LINE CR1 -112 1465 1296 229 135 0 0 chr9 2399523 2399560 -139871884 - MER103 DNA DNA -1 165 129 939 249 111 47 chr9 2399748 2400153 -139871291 - MLT1H LTR MaLR 0 549 119 242 313 117 31 chr9 2400263 2400426 -139871018 - MER5B DNA MER1_type -1 177 1 1677 165 47 52 chr9 2401139 2401521 -139869923 - MLT1B LTR MaLR -10 380 1 854 236 64 40 chr9 2402054 2402086 -139869358 + MIR SINE MIR 7 37 -225 1107 202 52 0 chr9 2402086 2402299 -139869145 + MER58A DNA MER1_type 1 224 0 854 236 64 40 chr9 2402299 2402516 -139868928 + MIR SINE MIR 37 262 0 1764 167 20 0 chr9 2403410 2403703 -139867741 + AluJo SINE Alu 1 299 -13 3038 81 26 2 chr9 2403884 2404305 -139867139 + MLT2A2 LTR ERVL 23 453 0 5250 141 47 1 chr9 2404349 2405314 -139866130 - L1MC1 LINE L1 -1 6612 5604 2240 105 10 0 chr9 2405314 2405610 -139865834 - AluSp SINE Alu -14 299 1 4288 111 28 7 chr9 2405628 2406315 -139865129 - L1MA3 LINE L1 0 6305 5605 210 71 0 0 chr9 2406315 2406343 -139865101 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 998 148 0 0 chr9 2406344 2406506 -139864938 - L1PA15 LINE L1 -31 6134 5973 19445 134 29 10 chr9 2406515 2409743 -139861701 - L1M1 LINE L1 -4262 3303 14 1309 229 61 11 chr9 2409748 2410108 -139861336 - L1MC1 LINE L1 -823 5603 5216 201 39 0 0 chr9 2410108 2410134 -139861310 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1309 229 61 11 chr9 2410134 2410213 -139861231 - L1MC1 LINE L1 -1210 5216 5142 * 1603 267 6 0 chr9 2410212 2410702 -139860742 - L1MC1 LINE L1 -3420 3006 2514 2521 179 53 2 chr9 2410702 2411287 -139860157 + L1PBa LINE L1 1758 2372 -4491 5964 92 14 22 chr9 2411287 2412208 -139859236 - L1PA12 LINE L1 -4 6164 5236 4272 76 43 3 chr9 2412208 2412790 -139858654 + LTR14B LTR ERVK 4 608 0 5964 92 14 22 chr9 2412790 2413399 -139858045 - L1PA12 LINE L1 -932 5236 4638 2200 132 0 0 chr9 2413399 2413695 -139857749 + AluSx SINE Alu 1 296 -16 5964 92 14 22 chr9 2413695 2413947 -139857497 - L1PA12 LINE L1 -1530 4638 4385 559 239 22 0 chr9 2413948 2414082 -139857362 - L1MC1 LINE L1 -6284 142 6 447 246 44 11 chr9 2414509 2414692 -139856752 - L1ME4a LINE L1 -2 6119 5931 378 323 62 0 chr9 2414716 2414877 -139856567 - MIR SINE MIR -2 260 90 21 71 0 0 chr9 2414938 2414980 -139856464 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 2415057 2415078 -139856366 + AT_rich Low_complexity Low_complexity 1 21 0 2447 63 0 3 chr9 2415724 2416025 -139855419 - AluY SINE Alu -11 300 1 338 216 129 52 chr9 2416292 2416408 -139855036 - MIR3 SINE MIR -6 202 78 1565 268 26 35 chr9 2416640 2417210 -139854234 - L1MD3 LINE L1 -18 7977 7413 476 202 0 23 chr9 2417212 2417341 -139854103 + L1MD3 LINE L1 6938 7063 -932 3145 207 32 2 chr9 2417348 2417975 -139853469 + MER82 DNA MER2_type 8 653 0 725 214 61 31 chr9 2417980 2418209 -139853235 + L1MC4a LINE L1 7015 7250 -558 24 0 0 0 chr9 2418342 2418366 -139853078 + AT_rich Low_complexity Low_complexity 1 24 0 333 282 137 8 chr9 2418575 2418706 -139852738 + L2 LINE L2 3122 3269 -3 813 262 187 18 chr9 2419133 2419518 -139851926 - MLT1J2 LTR MaLR 0 450 1 226 301 70 24 chr9 2420211 2420424 -139851020 - L1ME4a LINE L1 -4 6117 5895 599 208 214 0 chr9 2420644 2420812 -139850632 + MIR SINE MIR 58 261 -1 952 173 9 61 chr9 2420866 2421097 -139850347 + MER20 DNA MER1_type 1 219 0 706 216 29 39 chr9 2421325 2421533 -139849911 - MER106A DNA MER1_type -2 234 29 205 347 95 11 chr9 2422494 2422589 -139848855 + L2 LINE L2 3161 3263 -9 1554 201 7 26 chr9 2423777 2424080 -139847364 - AluJb SINE Alu -15 297 1 464 295 70 8 chr9 2424300 2424429 -139847015 + L2 LINE L2 3136 3272 0 5846 83 30 52 chr9 2425024 2426637 -139844807 + L1PA10 LINE L1 4558 6152 -16 2242 117 0 13 chr9 2427304 2427621 -139843823 + AluSq SINE Alu 1 313 0 22 0 0 0 chr9 2428381 2428403 -139843041 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 2429249 2429270 -139842174 + (T)n Simple_repeat Simple_repeat 1 21 0 29 0 0 0 chr9 2429886 2429915 -139841529 + AT_rich Low_complexity Low_complexity 1 29 0 215 274 0 0 chr9 2430192 2430243 -139841201 + G-rich Low_complexity Low_complexity 6 56 0 340 263 53 45 chr9 2431139 2431272 -139840172 - MIR SINE MIR -18 244 111 580 261 141 5 chr9 2432109 2432308 -139839136 + MIR SINE MIR 29 254 -8 823 243 79 69 chr9 2433817 2434224 -139837220 + HsTC2a DNA Tc2 94 504 -240 455 156 22 11 chr9 2434225 2434315 -139837129 + HsTC2a DNA Tc2 651 741 -1 250 292 83 0 chr9 2434931 2435051 -139836393 - L3b LINE CR1 -351 1232 1103 258 225 56 11 chr9 2435063 2435152 -139836292 - MER94 DNA DNA -9 125 33 863 274 155 44 chr9 2435190 2435602 -139835842 - L3 LINE CR1 -492 1085 615 2203 92 0 3 chr9 2435602 2435924 -139835520 + AluSg SINE Alu 1 321 0 863 274 155 44 chr9 2435924 2435967 -139835477 - L3 LINE CR1 -962 615 578 1144 199 85 99 chr9 2435969 2436462 -139834982 - LTR29 LTR ERV1 0 622 137 276 283 23 48 chr9 2436437 2436584 -139834860 - MER34 LTR ERV1 -409 133 1 * 182 329 25 63 chr9 2436605 2436763 -139834681 - L3 LINE CR1 -1055 522 371 180 143 0 122 chr9 2436844 2436893 -139834551 + L2 LINE L2 3261 3303 -10 2182 111 20 3 chr9 2438061 2438359 -139833085 + AluSx SINE Alu 1 303 -9 603 293 102 5 chr9 2438364 2438569 -139832875 + MIR SINE MIR 28 252 -10 547 281 207 5 chr9 2438766 2438969 -139832475 + MIR SINE MIR 2 245 -17 396 312 28 7 chr9 2439232 2439373 -139832071 - MER117 DNA MER1_type -53 144 1 2234 116 0 13 chr9 2439469 2439780 -139831664 - AluSx SINE Alu -5 307 1 1944 130 14 0 chr9 2440170 2440455 -139830989 - AluSq SINE Alu -7 306 18 665 302 33 13 chr9 2440606 2440915 -139830529 + L1ME LINE L1 5316 5558 -604 2822 82 3 72 chr9 2440946 2441337 -139830107 - THE1B LTR MaLR 0 364 1 523 220 20 0 chr9 2441376 2441476 -139829968 - MER94 DNA DNA 0 134 33 25 0 0 0 chr9 2441888 2441913 -139829531 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 2441965 2441989 -139829455 + AT_rich Low_complexity Low_complexity 1 24 0 240 86 0 0 chr9 2442847 2442882 -139828562 + (TG)n Simple_repeat Simple_repeat 1 35 0 264 59 0 0 chr9 2442882 2442916 -139828528 + (GA)n Simple_repeat Simple_repeat 2 35 0 902 180 33 27 chr9 2443086 2443260 -139828184 + MLT1H LTR MaLR 1 175 -374 3462 138 66 22 chr9 2443260 2443849 -139827595 - MER41B LTR ERV1 0 635 21 245 91 0 0 chr9 2443846 2443879 -139827565 - MER41A LTR ERV1 -496 58 26 * 590 235 103 135 chr9 2443887 2444236 -139827208 + MLT1H LTR MaLR 173 510 -39 827 133 103 42 chr9 2445333 2445498 -139825946 + L1PA16 LINE L1 5992 6166 0 21 57 0 0 chr9 2445607 2445642 -139825802 + AT_rich Low_complexity Low_complexity 1 35 0 216 299 219 12 chr9 2445773 2445937 -139825507 + MIR SINE MIR 59 256 -6 348 217 29 0 chr9 2446813 2446882 -139824562 - MER5B DNA MER1_type 0 178 108 12394 118 32 81 chr9 2446886 2453214 -139818230 + L1PA8 LINE L1 12 6172 0 371 197 21 3 chr9 2453214 2453302 -139818142 + L1M4 LINE L1 4657 4751 -1395 393 22 0 0 chr9 2453304 2453349 -139818095 - LTR7 LTR ERV1 -405 45 1 3529 107 6 28 chr9 2453349 2453882 -139817562 - HERVH LTR ERV1 0 7713 7193 3118 234 4 4 chr9 2453871 2454572 -139816872 - HERVH LTR ERV1 -2699 5014 4314 * 17139 185 21 36 chr9 2454636 2458728 -139812716 - HERVH LTR ERV1 -2297 4232 1 2083 162 60 21 chr9 2458728 2459161 -139812283 - LTR7 LTR ERV1 0 450 1 9999 147 57 82 chr9 2459215 2460719 -139810725 + L1MC3 LINE L1 5653 7194 -591 277 294 11 22 chr9 2460719 2460811 -139810633 + MLT1F1 LTR MaLR 35 125 -442 9999 147 57 82 chr9 2460811 2461383 -139810061 + L1MC3 LINE L1 7194 7766 -19 2697 20 0 0 chr9 2461383 2461683 -139809761 - AluY SINE Alu -11 300 1 9999 147 57 82 chr9 2461683 2461703 -139809741 + L1MC3 LINE L1 7766 7785 0 505 233 15 3 chr9 2461707 2461826 -139809618 - MER5B DNA MER1_type -57 126 12 255 240 10 80 chr9 2462755 2462855 -139808589 - L2 LINE L2 0 3313 3221 1185 202 5 14 chr9 2462934 2463152 -139808292 + MER20 DNA MER1_type 1 216 -3 1079 181 62 0 chr9 2463654 2463847 -139807597 - MER3 DNA MER1_type -4 205 1 2393 249 34 39 chr9 2465836 2466562 -139804882 + MER21B LTR ERV1 13 735 -128 2573 94 71 0 chr9 2466572 2466922 -139804522 + MER51B LTR ERV1 3 377 0 228 236 55 18 chr9 2466959 2467014 -139804430 - L2 LINE L2 -60 3212 3156 513 287 123 20 chr9 2467051 2467246 -139804198 + LTR33 LTR ERVL 1 215 -306 305 246 106 65 chr9 2467311 2467510 -139803934 + LTR33 LTR ERVL 315 521 0 391 319 60 44 chr9 2468446 2468545 -139802899 - MIR3 SINE MIR -21 187 82 2284 140 10 75 chr9 2468545 2468960 -139802484 - MLT1B LTR MaLR 0 390 3 391 319 60 44 chr9 2468960 2469042 -139802402 - MIR3 SINE MIR -126 82 3 199 306 32 0 chr9 2469829 2469891 -139801553 - MIR SINE MIR -63 145 82 545 291 14 0 chr9 2470180 2470328 -139801116 - MER103 DNA DNA -7 159 10 1082 252 70 83 chr9 2471355 2471954 -139799490 + MLT1L LTR MaLR 21 611 -4 627 322 153 8 chr9 2472185 2472539 -139798905 - L2 LINE L2 -8 3305 2901 250 297 168 0 chr9 2473444 2473545 -139797899 - MIR3 SINE MIR -4 204 87 374 243 168 34 chr9 2473671 2473846 -139797598 - MIR SINE MIR -30 232 31 482 314 168 9 chr9 2474155 2474375 -139797069 + MIR SINE MIR 2 256 -6 2267 97 3 3 chr9 2474527 2474825 -139796619 - AluSp SINE Alu -15 298 1 463 278 133 17 chr9 2476081 2476322 -139795122 - L1ME3 LINE L1 -215 5947 5679 2127 124 0 0 chr9 2476495 2476825 -139794619 - AluSx SINE Alu 0 330 1 1590 170 0 56 chr9 2476831 2477137 -139794307 - AluJb SINE Alu -17 295 7 371 187 131 9 chr9 2477318 2477425 -139794019 - L1MEd LINE L1 -5998 121 2 209 315 46 39 chr9 2478517 2478647 -139792797 + L2 LINE L2 2716 2846 -468 243 0 0 0 chr9 2478704 2478731 -139792713 + (A)n Simple_repeat Simple_repeat 1 27 0 358 256 183 0 chr9 2479273 2479410 -139792034 + MIR SINE MIR 57 218 -44 205 319 109 34 chr9 2479538 2479657 -139791787 - L2 LINE L2 -9 3263 3136 848 215 17 52 chr9 2479684 2479917 -139791527 + MER33 DNA MER1_type 1 225 -99 1045 61 0 0 chr9 2479917 2480048 -139791396 + AluY SINE Alu 181 311 0 252 0 0 0 chr9 2480052 2480080 -139791364 + (TA)n Simple_repeat Simple_repeat 2 29 0 408 112 45 34 chr9 2480087 2480176 -139791268 + MER33 DNA MER1_type 220 309 -15 1837 130 22 7 chr9 2480181 2480458 -139790986 - AluSq SINE Alu -19 294 14 264 300 148 51 chr9 2480522 2480779 -139790665 - L2 LINE L2 -167 3105 2824 225 158 329 13 chr9 2481452 2481528 -139789916 + MER5A DNA MER1_type 59 158 -31 * 445 212 30 10 chr9 2481462 2481561 -139789883 - MER5A DNA MER1_type -80 109 9 * 653 319 152 27 chr9 2481554 2482194 -139789250 - L3 LINE CR1 -16 1561 842 726 288 83 47 chr9 2482373 2482845 -139788599 - L1ME4a LINE L1 -280 5841 5353 2709 100 3 11 chr9 2483041 2483422 -139788022 - L1MA2 LINE L1 0 6304 5927 302 91 121 76 chr9 2483516 2483582 -139787862 + MADE1 DNA Mariner 12 80 0 461 281 39 54 chr9 2483647 2483661 -139787783 - L1ME4a LINE L1 -1968 4178 4165 2281 95 0 10 chr9 2483661 2483966 -139787478 - AluY SINE Alu -9 302 1 461 281 39 54 chr9 2483966 2484268 -139787176 - L1ME4a LINE L1 -1981 4165 3869 839 248 8 33 chr9 2484359 2484601 -139786843 + L1MB7 LINE L1 5948 6183 -1 1416 246 38 32 chr9 2484603 2485628 -139785816 - L1MC4 LINE L1 -384 7658 6462 21 36 0 0 chr9 2486841 2486869 -139784575 + AT_rich Low_complexity Low_complexity 1 28 0 343 316 0 10 chr9 2487364 2487462 -139783982 - L2 LINE L2 0 3313 3217 763 226 97 11 chr9 2487463 2487649 -139783795 + MER63A DNA MER1_type 9 210 0 208 283 0 0 chr9 2487649 2487695 -139783749 - L2 LINE L2 -93 3179 3134 1104 329 70 23 chr9 2487792 2488616 -139782828 - L2 LINE L2 -203 3069 2204 252 294 0 0 chr9 2488821 2488889 -139782555 + MIR SINE MIR 183 250 -12 338 157 12 0 chr9 2488891 2488974 -139782470 + CT-rich Low_complexity Low_complexity 2 85 0 222 125 25 0 chr9 2489087 2489127 -139782317 + (TG)n Simple_repeat Simple_repeat 1 41 0 1656 249 98 52 chr9 2489534 2489873 -139781571 - MLT1G1 LTR MaLR -15 580 258 1832 146 27 7 chr9 2489873 2490174 -139781270 - AluSx SINE Alu -5 307 1 790 282 28 5 chr9 2490089 2490180 -139781264 - AluJo SINE Alu -92 220 3 * 682 246 0 0 chr9 2490180 2490302 -139781142 - FLAM_A SINE Alu -10 123 2 1656 249 98 52 chr9 2490302 2490508 -139780936 - MLT1G1 LTR MaLR -341 254 3 2537 53 3 0 chr9 2491914 2492218 -139779226 + AluYa5 SINE Alu 2 306 -5 31 68 0 0 chr9 2492617 2492676 -139778768 + AT_rich Low_complexity Low_complexity 1 59 0 237 276 150 0 chr9 2493046 2493173 -139778271 + MER117 DNA MER1_type 51 196 -1 372 270 63 9 chr9 2494717 2494828 -139776616 + MIR SINE MIR 8 124 -138 385 273 113 92 chr9 2494833 2495126 -139776318 - L2 LINE L2 0 3272 2974 245 281 177 0 chr9 2495123 2495219 -139776225 + MIR SINE MIR 115 227 -35 * 1317 278 55 26 chr9 2495503 2495957 -139775487 + LTR16C LTR ERVL 1 467 -24 970 294 71 34 chr9 2495967 2496474 -139774970 + LTR67 LTR ERVL 23 548 -9 601 270 82 0 chr9 2496480 2496713 -139774731 - LTR33A LTR ERVL 0 523 272 204 315 121 60 chr9 2496775 2496924 -139774520 - L2 LINE L2 -1141 2173 2016 3057 161 21 3 chr9 2497468 2498047 -139773397 - L1MA8 LINE L1 -22 6269 5681 320 327 69 25 chr9 2498052 2498211 -139773233 + MIR SINE MIR 20 185 -77 186 43 0 0 chr9 2498324 2498347 -139773097 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 2499400 2499421 -139772023 + AT_rich Low_complexity Low_complexity 1 21 0 396 255 102 10 chr9 2499916 2500112 -139771332 - HAL1 LINE L1 -296 2211 1998 749 243 78 19 chr9 2500138 2500344 -139771100 - MIR SINE MIR -31 231 14 615 265 90 13 chr9 2500460 2500694 -139770750 - HAL1 LINE L1 -636 1871 1620 1155 248 110 63 chr9 2500713 2501486 -139769958 - HAL1 LINE L1 -1009 1498 690 349 391 14 0 chr9 2502408 2502546 -139768898 - MIR SINE MIR -98 164 25 435 309 33 48 chr9 2502723 2502933 -139768511 + L1MEd LINE L1 122 328 -5791 741 182 0 0 chr9 2503063 2503184 -139768260 + AluJo/FLAM SINE Alu 1 121 -191 1431 186 11 22 chr9 2503184 2503453 -139767991 + AluJo SINE Alu 27 292 -20 932 279 36 68 chr9 2503464 2504203 -139767241 + L1MEd LINE L1 494 1209 -4910 427 292 64 68 chr9 2504219 2504438 -139767006 + HAL1 LINE L1 1301 1518 -989 231 279 31 54 chr9 2505074 2505203 -139766241 + L1ME LINE L1 5610 5735 -386 417 281 136 28 chr9 2505389 2505685 -139765759 + L1ME4a LINE L1 5335 5689 -432 201 74 0 0 chr9 2505685 2505712 -139765732 + (TG)n Simple_repeat Simple_repeat 2 28 0 417 281 136 28 chr9 2505712 2505839 -139765605 + L1ME4a LINE L1 5689 5801 -320 30 59 0 0 chr9 2505869 2505920 -139765524 + AT_rich Low_complexity Low_complexity 1 51 0 243 225 78 47 chr9 2505946 2506075 -139765369 + L1ME4a LINE L1 5977 6109 -12 218 175 0 18 chr9 2506189 2506246 -139765198 + GA-rich Low_complexity Low_complexity 2 57 0 24 77 0 0 chr9 2506353 2506405 -139765039 + AT_rich Low_complexity Low_complexity 1 52 0 430 308 127 60 chr9 2507235 2507651 -139763793 + L2 LINE L2 2804 3247 -25 1719 243 94 8 chr9 2507653 2508164 -139763280 + L1ME3A LINE L1 5613 6167 -3 211 338 12 12 chr9 2509399 2509479 -139761965 + L2 LINE L2 2970 3049 -223 647 203 49 7 chr9 2509594 2509737 -139761707 - MIR SINE MIR -3 259 111 273 348 71 7 chr9 2511116 2511257 -139760187 + L2 LINE L2 3116 3265 -7 5214 175 17 6 chr9 2512332 2513395 -139758049 - L1 LINE L1 -1894 4252 3178 305 291 101 20 chr9 2513396 2513544 -139757900 - L2 LINE L2 -274 2998 2839 1810 101 42 32 chr9 2513597 2513905 -139757539 + L1MA3 LINE L1 5994 6304 -1 269 284 216 61 chr9 2513929 2514207 -139757237 + L2 LINE L2 2988 3308 -5 2212 90 0 0 chr9 2514226 2514527 -139756917 + L1PB1 LINE L1 5851 6151 0 427 286 138 22 chr9 2515741 2515972 -139755472 - MIR SINE MIR 0 262 5 847 140 25 13 chr9 2517648 2517805 -139753639 + L1M4b LINE L1 11 169 -6690 1365 216 28 21 chr9 2517810 2518199 -139753245 + L1 LINE L1 4848 5239 -907 297 54 0 0 chr9 2518200 2518237 -139753207 - MER61A LTR ERV1 0 343 307 337 57 0 38 chr9 2518237 2518290 -139753154 - MLT2A2 LTR ERVL 0 453 403 375 270 0 0 chr9 2518318 2518407 -139753037 - L1MC4 LINE L1 -1340 6702 6614 350 240 0 62 chr9 2518399 2518495 -139752949 + L1MC4 LINE L1 6614 6703 -1339 * 302 322 0 0 chr9 2518421 2518511 -139752933 - L1MC4 LINE L1 -1339 6703 6614 * 2970 77 0 5 chr9 2518513 2518915 -139752529 - MLT2A1 LTR ERVL -44 400 1 1531 140 29 57 chr9 2519005 2519355 -139752089 + L1MA9 LINE L1 5738 6077 -235 528 214 14 4 chr9 2519361 2519494 -139751950 + L1MA9 LINE L1 6180 6334 0 4612 239 52 11 chr9 2519502 2520646 -139750798 + L1M4b LINE L1 -372 818 -5510 281 230 63 0 chr9 2520654 2520771 -139750673 + L1M4b LINE L1 1806 1886 -4540 21379 37 12 10 chr9 2521036 2524519 -139746925 - L1PA4 LINE L1 0 6155 2667 5559 109 6 13 chr9 2524582 2525442 -139746002 + L1PA10 LINE L1 5305 6158 -10 271 173 245 43 chr9 2525465 2525481 -139745963 + L1MB8 LINE L1 5179 5190 -956 1900 181 33 33 chr9 2525481 2525845 -139745599 - THE1B LTR MaLR 0 364 1 271 173 245 43 chr9 2525845 2525967 -139745477 + L1MB8 LINE L1 5190 5345 -801 * 13454 147 37 21 chr9 2525966 2526315 -139745129 + L1PBa LINE L1 3 345 -6518 1800 94 4 33 chr9 2526315 2526560 -139744884 + AluSx SINE Alu 50 287 -25 203 0 0 36 chr9 2526564 2526592 -139744852 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 13454 147 37 21 chr9 2526592 2528749 -139742695 + L1PBa LINE L1 347 2552 -4311 12078 186 49 14 chr9 2528761 2535171 -139736273 + L1PB1 LINE L1 1 6864 -3 25 0 0 0 chr9 2535171 2535196 -139736248 + AT_rich Low_complexity Low_complexity 1 25 0 3619 179 28 43 chr9 2535203 2535348 -139736096 + L1MB8 LINE L1 5338 5484 -694 2166 122 0 3 chr9 2535348 2535642 -139735802 - AluSx SINE Alu -19 293 1 3619 179 28 43 chr9 2535642 2536347 -139735097 + L1MB8 LINE L1 5484 6175 -3 5862 49 3 0 chr9 2536567 2537284 -139734160 + L1PA7 LINE L1 5435 6153 -1 830 356 30 8 chr9 2537452 2537823 -139733621 - LTR16C LTR ERVL -11 480 102 340 236 62 35 chr9 2538543 2538687 -139732757 + MER103 DNA DNA 17 164 -2 538 281 43 0 chr9 2538752 2538891 -139732553 - MIR3 SINE MIR -51 157 13 391 239 141 33 chr9 2539252 2539436 -139732008 + MLT1J2 LTR MaLR 244 447 -3 563 337 80 52 chr9 2539697 2540391 -139731053 + L2 LINE L2 2550 3250 -22 210 118 0 0 chr9 2540623 2540657 -139730787 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 277 323 42 0 chr9 2540756 2540852 -139730592 + MIR SINE MIR 16 115 -147 435 286 28 45 chr9 2541035 2541213 -139730231 - MIR SINE MIR -84 178 4 274 351 105 12 chr9 2541676 2541847 -139729597 - MIR3 SINE MIR -3 205 19 196 286 44 33 chr9 2543329 2543420 -139728024 + MIR SINE MIR 2 93 -169 182 150 25 0 chr9 2543568 2543608 -139727836 + (CATAT)n Simple_repeat Simple_repeat 3 43 0 1130 284 94 23 chr9 2544283 2544857 -139726587 + MLT1L LTR MaLR 1 615 0 224 345 12 12 chr9 2544901 2544985 -139726459 + L2 LINE L2 3180 3263 -9 392 355 26 19 chr9 2545324 2545479 -139725965 - L2 LINE L2 -1 3271 3116 2020 142 10 0 chr9 2545867 2546169 -139725275 + AluSx SINE Alu 1 305 -7 370 291 82 0 chr9 2546514 2546624 -139724820 + MIR SINE MIR 29 147 -115 1913 163 29 27 chr9 2546649 2547023 -139724421 + THE1C LTR MaLR 1 375 0 320 202 24 12 chr9 2547168 2547252 -139724192 + L1ME3A LINE L1 6077 6161 -9 23 0 0 0 chr9 2547397 2547420 -139724024 + AT_rich Low_complexity Low_complexity 1 23 0 340 264 90 0 chr9 2547548 2547692 -139723752 - L1ME4a LINE L1 -289 5832 5676 369 0 0 0 chr9 2548548 2548589 -139722855 + (CA)n Simple_repeat Simple_repeat 1 41 0 265 330 92 63 chr9 2550160 2550508 -139720936 + L2 LINE L2 2362 2719 -595 1489 217 28 12 chr9 2550821 2551180 -139720264 + MLT1A1 LTR MaLR 1 365 0 367 115 297 40 chr9 2551181 2551329 -139720115 - MER53 DNA DNA -2 187 2 384 283 83 49 chr9 2551425 2551630 -139719814 + HAL1 LINE L1 1 212 -2295 246 332 50 50 chr9 2551750 2551970 -139719474 + HAL1 LINE L1 410 629 -1878 834 250 126 57 chr9 2552045 2552588 -139718856 + HAL1 LINE L1 780 1381 -1126 537 135 21 0 chr9 2552588 2552684 -139718760 + L1MB3 LINE L1 6083 6180 -3 834 250 126 57 chr9 2552684 2552821 -139718623 + HAL1 LINE L1 1381 1507 -1000 456 175 0 0 chr9 2552838 2552918 -139718526 + MADE1 DNA Mariner 1 80 0 1872 146 24 3 chr9 2552959 2553254 -139718190 + AluSx SINE Alu 3 303 -9 196 269 115 0 chr9 2553524 2553576 -139717868 - L2 LINE L2 -1 3271 3214 2128 152 0 15 chr9 2553584 2553926 -139717518 + MER1B DNA MER1_type 1 337 0 203 325 77 41 chr9 2554069 2554263 -139717181 - L2 LINE L2 -162 3110 2910 207 384 139 17 chr9 2554459 2554631 -139716813 + L2 LINE L2 3076 3268 -4 216 274 96 14 chr9 2556920 2556993 -139714451 - L2 LINE L2 -5 3267 3189 950 307 56 14 chr9 2557009 2557364 -139714080 - MLT1I LTR MaLR 0 409 40 22 0 0 0 chr9 2557799 2557821 -139713623 + AT_rich Low_complexity Low_complexity 1 22 0 311 299 0 21 chr9 2557874 2557971 -139713473 + L1MDa LINE L1 2459 2553 -3987 840 163 0 7 chr9 2557972 2558107 -139713337 + AluJo SINE Alu 1 134 -178 536 225 45 64 chr9 2558178 2558405 -139713039 + L1MDa LINE L1 2637 2860 -3680 2222 91 3 0 chr9 2558405 2558692 -139712752 + AluSp SINE Alu 1 288 -25 536 225 45 64 chr9 2558692 2558731 -139712713 + L1MDa LINE L1 2860 2898 -3642 3001 144 44 94 chr9 2558734 2559490 -139711954 + L1MB2 LINE L1 5449 6166 -5 834 272 121 49 chr9 2559549 2560083 -139711361 - MLT1F1 LTR MaLR -1 566 1 705 266 77 29 chr9 2560085 2560473 -139710971 + L1MDa LINE L1 2952 3363 -3177 2121 88 4 0 chr9 2560473 2560746 -139710698 + AluY SINE Alu 34 307 -4 705 266 77 29 chr9 2560746 2560774 -139710670 + L1MDa LINE L1 3363 3388 -3152 5644 180 161 28 chr9 2560995 2562559 -139708885 - MER52A LTR ERV1 0 1755 6 2879 249 58 43 chr9 2562853 2565138 -139706306 - L1 LINE L1 -3534 2816 830 1999 150 10 0 chr9 2565161 2565455 -139705989 + AluSx SINE Alu 1 297 -15 28408 107 13 10 chr9 2565457 2571122 -139700322 + L1PA7 LINE L1 748 6469 0 931 278 116 10 chr9 2571350 2571746 -139699698 + HAL1 LINE L1 1530 1967 -540 1101 284 149 15 chr9 2572437 2572973 -139698471 - L1 LINE L1 -5672 609 2 467 269 52 84 chr9 2573222 2574202 -139697242 + L1MEd LINE L1 648 1692 -884 893 241 67 15 chr9 2574416 2574818 -139696626 - L1M4 LINE L1 -2751 3395 2973 600 263 32 21 chr9 2575291 2575650 -139695794 + L1MEd LINE L1 2113 2437 -3778 3153 100 0 4 chr9 2575661 2576113 -139695331 - MER9 LTR ERVK -61 450 1 1542 246 66 26 chr9 2576274 2577013 -139694431 + L1MEd LINE L1 2704 3472 -2743 192 304 18 0 chr9 2577355 2577411 -139694033 + L2 LINE L2 3214 3270 -2 1349 214 121 6 chr9 2577518 2577873 -139693571 + MSTD LTR MaLR 1 396 0 2402 124 5 22 chr9 2579930 2580300 -139691144 + THE1B LTR MaLR 1 364 0 230 356 0 26 chr9 2580943 2581058 -139690386 - L2 LINE L2 -179 3093 2982 2276 94 0 0 chr9 2582476 2582764 -139688680 - AluSg SINE Alu -22 288 1 218 319 56 14 chr9 2582847 2582919 -139688525 - L2 LINE L2 -44 3228 3154 189 292 157 0 chr9 2582948 2583037 -139688407 + L2 LINE L2 3200 3302 -11 426 238 65 38 chr9 2583548 2583733 -139687711 + L1ME4a LINE L1 5929 6118 -3 299 222 52 30 chr9 2584296 2584431 -139687013 + L1ME4a LINE L1 5984 6121 0 2353 137 72 10 chr9 2585163 2585566 -139685878 + MSTA LTR MaLR 1 428 0 224 234 0 0 chr9 2585863 2585910 -139685534 + MER91A DNA MER1_type 2 48 -148 1741 194 85 8 chr9 2586004 2586405 -139685039 + MLT1C LTR MaLR 34 465 -2 225 224 0 52 chr9 2587729 2587787 -139683657 + MIR SINE MIR 99 153 -55 199 54 54 0 chr9 2587927 2587964 -139683480 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 517 197 230 0 chr9 2587968 2588120 -139683324 + MER5A DNA MER1_type 3 189 0 706 226 65 0 chr9 2588624 2588792 -139682652 - MER20 DNA MER1_type 0 219 41 2576 134 25 2 chr9 2588797 2589212 -139682232 - MSTB LTR MaLR 0 414 2 1479 221 25 43 chr9 2589518 2589962 -139681482 - LTR40b LTR ERVL 0 462 27 211 336 159 0 chr9 2589973 2590080 -139681364 + L2 LINE L2 3186 3309 -4 2142 195 86 13 chr9 2590162 2590629 -139680815 - MLT1D LTR MaLR -2 503 3 232 322 226 0 chr9 2591052 2591229 -139680215 - MIR SINE MIR -18 244 28 998 235 9 0 chr9 2591338 2591555 -139679889 + MER58A DNA MER1_type 1 219 -5 2016 183 113 33 chr9 2591555 2591995 -139679449 + MLT2B1 LTR ERVL 1 484 -36 419 35 18 0 chr9 2591995 2592052 -139679392 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2016 183 113 33 chr9 2592052 2592091 -139679353 + MLT2B1 LTR ERVL 484 518 -2 315 303 0 55 chr9 2592102 2592211 -139679233 - L1ME3A LINE L1 -105 6065 5963 395 260 1 9 chr9 2592308 2592441 -139679003 - L1ME3A LINE L1 -469 5693 5561 255 103 0 0 chr9 2592441 2592480 -139678964 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5236 154 31 23 chr9 2592480 2592729 -139678715 - L1MA5A LINE L1 -9 6288 6042 2034 151 15 0 chr9 2592729 2593060 -139678384 + MER1B DNA MER1_type 2 337 0 5236 154 31 23 chr9 2593060 2594607 -139676837 - L1MA5A LINE L1 -255 6042 4474 23 0 0 0 chr9 2594607 2594630 -139676814 + AT_rich Low_complexity Low_complexity 1 23 0 4554 144 5 1 chr9 2594630 2595398 -139676046 - L1PA13 LINE L1 -6 6157 5387 * 5751 169 8 6 chr9 2595392 2596476 -139674968 - L1PA13 LINE L1 -1315 4831 3745 9179 223 26 13 chr9 2596476 2599279 -139672165 - L1 LINE L1 -1643 5145 2349 24 32 0 0 chr9 2599285 2599316 -139672128 + AT_rich Low_complexity Low_complexity 1 31 0 10530 193 28 52 chr9 2599332 2601660 -139669784 - L1 LINE L1 -4514 2275 3 1842 257 120 45 chr9 2601700 2603482 -139667962 - L1MC/D LINE L1 -707 5444 3632 21 36 0 0 chr9 2603783 2603811 -139667633 + AT_rich Low_complexity Low_complexity 1 28 0 802 263 64 57 chr9 2603837 2604575 -139666869 - L1MC/D LINE L1 -2630 3516 2774 24 32 0 0 chr9 2604653 2604684 -139666760 + AT_rich Low_complexity Low_complexity 1 31 0 212 143 48 0 chr9 2604738 2604780 -139666664 + (TATG)n Simple_repeat Simple_repeat 4 47 0 312 304 7 22 chr9 2605633 2605771 -139665673 + CT-rich Low_complexity Low_complexity 3 138 0 583 226 0 51 chr9 2606201 2606338 -139665106 - FLAM_C SINE Alu -3 130 1 2297 116 0 3 chr9 2606656 2606959 -139664485 - AluSq SINE Alu -11 302 1 658 282 39 83 chr9 2607227 2607710 -139663734 + MLT1J LTR MaLR 23 484 -27 705 243 53 37 chr9 2607746 2607989 -139663455 + MIR SINE MIR 14 260 -2 207 0 0 0 chr9 2609263 2609286 -139662158 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1069 152 0 6 chr9 2610204 2610369 -139661075 + AluSg/x SINE Alu 125 288 -24 1376 238 42 118 chr9 2611593 2611767 -139659677 + MLT1E LTR MaLR 5 191 -402 2408 98 3 0 chr9 2611767 2612074 -139659370 + AluSg SINE Alu 1 308 -2 1376 238 42 118 chr9 2612074 2612524 -139658920 + MLT1E LTR MaLR 191 581 -12 802 147 84 101 chr9 2614933 2615171 -139656273 + MLT1B LTR MaLR 22 255 -135 2474 180 30 8 chr9 2615559 2616053 -139655391 + MLT1D LTR MaLR 1 505 0 734 133 0 8 chr9 2616063 2616191 -139655253 + (TCCCC)n Simple_repeat Simple_repeat 3 129 0 370 308 0 0 chr9 2616584 2616675 -139654769 - MIR SINE MIR -88 174 84 310 232 62 40 chr9 2616950 2617176 -139654268 + L1MC/D LINE L1 5600 5829 -303 471 306 100 58 chr9 2617337 2617736 -139653708 + L1MC/D LINE L1 3925 4340 -1806 42 57 0 0 chr9 2617826 2617896 -139653548 + AT_rich Low_complexity Low_complexity 1 70 0 249 316 40 40 chr9 2617983 2618280 -139653164 + L1MC/D LINE L1 4549 4845 -1301 359 331 45 45 chr9 2618346 2618721 -139652723 + L1MC/D LINE L1 4903 5277 -869 956 283 73 25 chr9 2618780 2619179 -139652265 + L1MC/D LINE L1 5360 5777 -2031 22 35 0 0 chr9 2619179 2619208 -139652236 + AT_rich Low_complexity Low_complexity 1 29 0 901 193 0 0 chr9 2619209 2619370 -139652074 + MSTB LTR MaLR 1 161 -265 * 2179 184 92 2 chr9 2619361 2619797 -139651647 - LTR36 LTR ERV1 -40 571 97 4512 152 38 7 chr9 2619814 2620621 -139650823 - MSTA-int LTR MaLR -819 832 1 2250 174 48 17 chr9 2620621 2621036 -139650408 - MSTA LTR MaLR 0 428 1 313 111 122 11 chr9 2621037 2621127 -139650317 - LTR36 LTR ERV1 -511 100 1 831 167 0 0 chr9 2621127 2621265 -139650179 + MSTB LTR MaLR 287 424 -2 4343 204 47 6 chr9 2621276 2622220 -139649224 + MSTB-int LTR MaLR 5 986 -665 200 325 84 0 chr9 2622855 2622938 -139648506 - L2 LINE L2 0 3272 3183 342 307 134 22 chr9 2624365 2624544 -139646900 + L1ME LINE L1 257 455 -5615 341 177 52 21 chr9 2624737 2624833 -139646611 + L1ME LINE L1 542 640 -5440 1409 130 5 0 chr9 2624862 2625062 -139646382 + AluSx SINE Alu 1 201 -111 820 256 0 0 chr9 2625070 2625242 -139646202 - MER58A DNA MER1_type -52 172 1 1867 355 54 23 chr9 2625296 2627360 -139644084 - ERVL LTR ERVL -1151 4613 2453 315 331 14 52 chr9 2627535 2627822 -139643622 - ERVL LTR ERVL -4653 1111 836 192 345 136 9 chr9 2628926 2629036 -139642408 - L2 LINE L2 -20 3293 3170 2446 173 22 7 chr9 2629127 2629573 -139641871 + LTR32 LTR ERVL 19 471 0 612 296 36 18 chr9 2629840 2630199 -139641245 - MLT1I LTR MaLR 0 409 2 476 285 36 112 chr9 2630222 2630527 -139640917 + L2 LINE L2 2990 3271 -1 511 231 134 11 chr9 2631269 2631432 -139640012 + MER5A DNA MER1_type 4 189 0 253 277 47 27 chr9 2632293 2632441 -139639003 + L2 LINE L2 1597 1747 -1567 221 364 119 36 chr9 2632655 2633067 -139638377 + L2 LINE L2 2822 3267 -5 1930 135 0 14 chr9 2634143 2634457 -139636987 - AluSx SINE Alu 0 310 1 21 82 0 0 chr9 2635172 2635221 -139636223 + AT_rich Low_complexity Low_complexity 1 49 0 27 49 0 0 chr9 2635257 2635298 -139636146 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr9 2635571 2635601 -139635843 + AT_rich Low_complexity Low_complexity 1 30 0 314 253 35 53 chr9 2636295 2636422 -139635022 - MIR SINE MIR -83 125 3 * 480 195 146 8 chr9 2636422 2636538 -139634906 - MER5A DNA MER1_type -15 174 42 2233 91 20 14 chr9 2636788 2637085 -139634359 - AluSq SINE Alu -14 299 1 4337 208 49 11 chr9 2637144 2637343 -139634101 - MER45B DNA AcHobo -548 1033 843 2326 88 0 0 chr9 2637343 2637638 -139633806 - AluY SINE Alu -16 295 1 4337 208 49 11 chr9 2637638 2638430 -139633014 - MER45B DNA AcHobo -738 843 4 2943 96 22 0 chr9 2638557 2638964 -139632480 + L1PA10 LINE L1 5749 6164 -4 2152 133 0 0 chr9 2640149 2640443 -139631001 - AluSg SINE Alu -16 294 1 384 310 62 31 chr9 2640487 2640713 -139630731 - L1MC/D LINE L1 -2034 5774 5542 2044 181 0 3 chr9 2640936 2641301 -139630143 + MLT2D LTR ERVL 1 364 -50 597 177 0 0 chr9 2641301 2641414 -139630030 + (TCCA)n Simple_repeat Simple_repeat 1 113 0 265 87 0 68 chr9 2641414 2641478 -139629966 + MLT2C1 LTR ERVL 355 397 0 272 273 58 65 chr9 2641519 2641794 -139629650 + L1M4 LINE L1 3951 4223 -1923 254 311 56 11 chr9 2642161 2642251 -139629193 - MIR SINE MIR -95 113 20 971 251 4 30 chr9 2642275 2642506 -139628938 - MIR SINE MIR -1 261 37 21 0 0 0 chr9 2642587 2642608 -139628836 + AT_rich Low_complexity Low_complexity 1 21 0 2327 78 0 0 chr9 2642608 2642891 -139628553 + AluY SINE Alu 1 283 -28 208 0 0 0 chr9 2642891 2642914 -139628530 + (TAAA)n Simple_repeat Simple_repeat 2 112 0 228 288 45 15 chr9 2643120 2643186 -139628258 + MIR SINE MIR 20 87 -175 662 265 26 48 chr9 2643310 2643540 -139627904 + MIR SINE MIR 36 260 -2 210 71 0 0 chr9 2644384 2644412 -139627032 + (TG)n Simple_repeat Simple_repeat 1 28 0 611 274 61 71 chr9 2644722 2645454 -139625990 + L1MC4a LINE L1 5148 5819 -302 1390 205 4 4 chr9 2645462 2645725 -139625719 + AluJo SINE Alu 32 294 -18 392 151 27 0 chr9 2645830 2645903 -139625541 + MER116 DNA Mariner 1 75 -5 21 0 0 0 chr9 2645904 2645925 -139625519 + AT_rich Low_complexity Low_complexity 1 21 0 359 265 71 109 chr9 2646193 2646431 -139625013 - MIR SINE MIR -25 237 9 776 279 59 41 chr9 2646730 2646806 -139624638 - LTR33 LTR ERVL -28 493 420 1212 162 69 0 chr9 2646806 2647010 -139624434 + MER20 DNA MER1_type 2 219 0 776 279 59 41 chr9 2647010 2647274 -139624170 - LTR33 LTR ERVL -101 420 147 612 159 102 64 chr9 2647444 2647601 -139623843 + MLT1A2 LTR MaLR 1 163 -211 193 204 0 56 chr9 2647663 2647771 -139623673 + CT-rich Low_complexity Low_complexity 6 107 0 911 184 61 31 chr9 2647771 2647967 -139623477 + MLT1A2 LTR MaLR 173 374 0 312 268 274 6 chr9 2648850 2649018 -139622426 + MIR SINE MIR 2 214 -48 366 237 140 77 chr9 2649556 2649684 -139621760 - MIR SINE MIR -9 253 106 2450 72 7 7 chr9 2649684 2649991 -139621453 + AluSc SINE Alu 1 307 -2 366 237 140 77 chr9 2649991 2650069 -139621375 - MIR SINE MIR -156 106 34 4724 157 37 21 chr9 2650621 2652532 -139618912 + L1MA2 LINE L1 15 1895 -5828 2311 113 0 0 chr9 2652532 2652833 -139618611 - AluSg SINE Alu -9 301 1 4724 157 37 21 chr9 2652833 2653861 -139617583 + L1MA2 LINE L1 1895 2906 -4817 2701 100 11 0 chr9 2653861 2654231 -139617213 - THE1C LTR MaLR -1 374 1 10400 123 14 30 chr9 2654231 2655837 -139615607 - THE1C-int LTR MaLR 0 1580 1 2188 131 50 8 chr9 2655837 2656197 -139615247 - THE1C LTR MaLR 0 375 1 4724 157 37 21 chr9 2656197 2657466 -139613978 + L1MA2 LINE L1 2906 4154 -3569 926 62 86 0 chr9 2657466 2657594 -139613850 + MER85 DNA T2_type 1 139 0 4724 157 37 21 chr9 2657594 2660807 -139610637 + L1MA2 LINE L1 4154 7723 0 467 309 186 14 chr9 2660851 2661136 -139610308 - MLT1I LTR MaLR -7 402 69 25 65 0 0 chr9 2661403 2661449 -139609995 + AT_rich Low_complexity Low_complexity 1 46 0 2244 103 3 7 chr9 2661449 2661749 -139609695 - AluSx SINE Alu -13 299 1 244 324 72 0 chr9 2663013 2663124 -139608320 + MIR SINE MIR 71 189 -73 347 241 23 0 chr9 2663580 2663667 -139607777 - MER96 DNA MER1_type? -81 94 6 285 231 0 26 chr9 2663959 2664037 -139607407 + L1MC5 LINE L1 7836 7911 -50 21 0 0 0 chr9 2664228 2664249 -139607195 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 2665377 2665398 -139606046 + AT_rich Low_complexity Low_complexity 1 21 0 2488 129 3 3 chr9 2665533 2665897 -139605547 + THE1B LTR MaLR 1 364 0 2066 192 117 16 chr9 2666701 2667154 -139604290 + MLT1D LTR MaLR 1 499 -6 2050 102 77 112 chr9 2667383 2667822 -139603622 + MSTA LTR MaLR 1 424 -4 304 147 147 42 chr9 2668070 2668165 -139603279 + MIR3 SINE MIR 98 202 -6 275 235 0 29 chr9 2668326 2668394 -139603050 - L2 LINE L2 0 3272 3207 768 224 12 0 chr9 2669721 2669882 -139601562 + MER69A DNA AcHobo 1 163 -14 888 158 184 11 chr9 2670144 2670334 -139601110 + MER58A DNA MER1_type 2 224 0 295 296 82 47 chr9 2670546 2670779 -139600665 + L2 LINE L2 3073 3313 0 1862 119 59 54 chr9 2670946 2671317 -139600127 + THE1C LTR MaLR 1 373 -2 885 271 54 7 chr9 2671898 2672228 -139599216 - MLT1H1 LTR MaLR -4 551 171 235 263 0 18 chr9 2675080 2675137 -139596307 - MIR3 SINE MIR -42 166 111 278 216 0 0 chr9 2677471 2677522 -139593922 + L2 LINE L2 3252 3302 -11 410 302 26 0 chr9 2677760 2677876 -139593568 + MIR SINE MIR 64 182 -80 288 239 0 14 chr9 2677925 2677996 -139593448 + HsTC2 DNA Tc2 1827 1896 -2 382 276 178 36 chr9 2678618 2678955 -139592489 + L1MC4a LINE L1 5527 5911 -1897 21 0 0 0 chr9 2678955 2678976 -139592468 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 2679142 2679178 -139592266 + AT_rich Low_complexity Low_complexity 1 36 0 3925 172 80 13 chr9 2680280 2681054 -139590390 - LTR1B LTR ERV1 0 826 1 25 0 0 0 chr9 2681350 2681375 -139590069 + AT_rich Low_complexity Low_complexity 1 25 0 2376 172 63 27 chr9 2681885 2682326 -139589118 - LTR32 LTR ERVL 0 471 15 209 291 186 0 chr9 2682374 2682460 -139588984 + MIR SINE MIR 53 154 -108 1994 114 61 10 chr9 2682467 2682764 -139588680 + AluSx SINE Alu 1 312 0 676 287 137 20 chr9 2683517 2684007 -139587437 - L2 LINE L2 -1 3312 2767 329 219 13 42 chr9 2684022 2684124 -139587320 + LTR16A LTR ERVL 358 457 0 832 153 200 12 chr9 2684456 2684626 -139586818 + AluSg/x SINE Alu 71 272 -37 3171 111 12 10 chr9 2684913 2685332 -139586112 + MER4E LTR ERV1 1 503 -263 1907 141 0 0 chr9 2685332 2685608 -139585836 + AluSx SINE Alu 37 312 0 3171 111 12 10 chr9 2685608 2685871 -139585573 + MER4E LTR ERV1 503 764 -2 649 196 14 7 chr9 2686111 2686254 -139585190 - MER5A DNA MER1_type -45 144 1 305 266 124 80 chr9 2686258 2686484 -139584960 + MLT1J LTR MaLR 274 509 -2 2968 71 2 117 chr9 2687323 2687829 -139583615 - LTR7 LTR ERV1 -2 448 1 2300 102 59 13 chr9 2687829 2688202 -139583242 - HERVH LTR ERV1 0 7713 7324 1383 129 18 5 chr9 2688202 2688419 -139583025 - HERVH LTR ERV1 -1894 5819 5600 3116 127 3 2 chr9 2688420 2689040 -139582404 - HERVH LTR ERV1 -2564 5149 4481 * 6013 97 5 2 chr9 2689037 2689889 -139581555 - HERVH LTR ERV1 -3720 3993 3140 * 15343 113 23 27 chr9 2689868 2692740 -139578704 - HERVH LTR ERV1 -4718 2995 1 2826 70 123 2 chr9 2692742 2693142 -139578302 - LTR7 LTR ERV1 -2 448 1 220 310 0 23 chr9 2695443 2695530 -139575914 + GA-rich Low_complexity Low_complexity 3 87 0 2641 35 0 16 chr9 2696584 2696900 -139574544 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 2696900 2696921 -139574523 + AT_rich Low_complexity Low_complexity 1 21 0 670 258 32 26 chr9 2697826 2698016 -139573428 + MIR SINE MIR 13 203 -59 773 198 48 39 chr9 2699118 2699325 -139572119 + L2 LINE L2 3104 3312 -1 282 255 97 41 chr9 2699867 2700012 -139571432 + MER103 DNA DNA 11 163 -3 1132 291 78 18 chr9 2700464 2700901 -139570543 - LTR16B LTR ERVL 0 464 2 460 186 41 105 chr9 2701067 2701260 -139570184 - MER69A DNA AcHobo 0 177 1 299 261 9 36 chr9 2701822 2701933 -139569511 + GA-rich Low_complexity Low_complexity 4 111 0 191 341 12 12 chr9 2702484 2702566 -139568878 + L2 LINE L2 3232 3313 0 652 296 105 35 chr9 2703649 2703856 -139567588 + L1MEd LINE L1 919 1110 -5200 5945 88 21 3 chr9 2703856 2704622 -139566822 + LTR17 LTR ERV1 1 780 0 652 296 105 35 chr9 2704622 2705251 -139566193 + L1MEd LINE L1 1110 1855 -4455 368 309 38 51 chr9 2706286 2706442 -139565002 + MIR SINE MIR 9 161 -69 373 213 0 13 chr9 2706616 2706691 -139564753 - MIR3 SINE MIR -15 193 120 278 253 20 40 chr9 2706878 2706977 -139564467 + MER113 DNA MER1_type? 310 406 -115 186 275 0 0 chr9 2708480 2708549 -139562895 + (CATA)n Simple_repeat Simple_repeat 4 72 0 199 333 0 31 chr9 2709030 2709126 -139562318 - L2 LINE L2 -606 2708 2616 403 269 135 55 chr9 2709298 2709581 -139561863 - MLT1I LTR MaLR -39 370 85 268 324 65 36 chr9 2710702 2710841 -139560603 - MIR3 SINE MIR -7 201 59 365 241 15 131 chr9 2711496 2711633 -139559811 + MIR3 SINE MIR 85 205 -3 21 36 0 0 chr9 2711921 2711949 -139559495 + AT_rich Low_complexity Low_complexity 1 28 0 1597 123 0 0 chr9 2711963 2712183 -139559261 - AluSq SINE Alu -93 220 1 731 273 157 37 chr9 2712885 2713350 -139558094 + LTR33 LTR ERVL 1 521 0 485 283 40 7 chr9 2713697 2713849 -139557595 + LTR33A LTR ERVL 367 523 0 456 277 117 26 chr9 2713976 2714207 -139557237 + MIR SINE MIR 11 262 0 1544 241 56 53 chr9 2715499 2715878 -139555566 + MLT1H LTR MaLR 1 427 -122 2583 89 60 20 chr9 2715878 2716228 -139555216 - THE1B LTR MaLR 0 364 1 1544 241 56 53 chr9 2716228 2716347 -139555097 + MLT1H LTR MaLR 427 544 -5 1745 227 33 85 chr9 2716750 2717318 -139554126 + MER77 LTR ERV1 85 601 -4 194 327 59 30 chr9 2717335 2717436 -139554008 + L2 LINE L2 2966 3069 -244 400 257 125 56 chr9 2717739 2717763 -139553681 - L2 LINE L2 -2 3311 3290 2332 115 0 0 chr9 2717763 2718067 -139553377 + AluSx SINE Alu 1 304 -8 400 257 125 56 chr9 2718067 2718186 -139553258 - L2 LINE L2 -23 3290 3158 1225 151 14 9 chr9 2718188 2718400 -139553044 - AluJo SINE Alu -14 298 86 558 317 42 0 chr9 2718409 2718576 -139552868 - L2 LINE L2 -160 3153 2980 2256 98 10 0 chr9 2719267 2719564 -139551880 + AluSx SINE Alu 1 300 -12 3051 197 5 17 chr9 2721001 2721590 -139549854 + L1MB7 LINE L1 5594 6175 -9 233 181 58 69 chr9 2721907 2721929 -139549515 - L1MD3 LINE L1 0 8039 8018 2235 116 7 0 chr9 2721929 2722231 -139549213 + AluSp SINE Alu 1 304 -9 233 181 58 69 chr9 2722231 2722337 -139549107 - L1MD3 LINE L1 -21 8018 7922 254 295 13 13 chr9 2722347 2722425 -139549019 + CT-rich Low_complexity Low_complexity 2 79 0 200 229 0 16 chr9 2722425 2722486 -139548958 + (TA)n Simple_repeat Simple_repeat 1 60 0 443 198 32 76 chr9 2722508 2722665 -139548779 - L1MC4 LINE L1 -156 7886 7737 1667 238 100 40 chr9 2722697 2723226 -139548218 - MLT1F1 LTR MaLR 0 567 3 3402 257 85 67 chr9 2723230 2723768 -139547676 - L1MC4a LINE L1 -195 7613 7086 1809 188 50 19 chr9 2723768 2724146 -139547298 - MLT1B LTR MaLR 0 390 1 3402 257 85 67 chr9 2724146 2724405 -139547039 - L1MC4a LINE L1 -722 7086 6833 713 136 18 0 chr9 2724405 2724515 -139546929 + L1MB5 LINE L1 6063 6174 0 3402 257 85 67 chr9 2724515 2725410 -139546034 - L1MC4a LINE L1 -975 6833 5889 195 42 0 0 chr9 2725868 2725892 -139545552 + (TC)n Simple_repeat Simple_repeat 1 24 0 189 74 0 0 chr9 2725907 2725934 -139545510 + (CA)n Simple_repeat Simple_repeat 1 27 0 2386 84 0 0 chr9 2727904 2728203 -139543241 + AluSx SINE Alu 1 299 -13 1470 250 97 24 chr9 2729638 2730186 -139541258 - L1ME3A LINE L1 -219 5951 5364 246 62 0 0 chr9 2730207 2730239 -139541205 + (TC)n Simple_repeat Simple_repeat 1 32 0 370 291 158 0 chr9 2730962 2731089 -139540355 + MER117 DNA MER1_type 1 147 -50 734 198 23 29 chr9 2731124 2731296 -139540148 + MER5B DNA MER1_type 1 171 -7 771 130 39 137 chr9 2731311 2731575 -139539869 - MER106B DNA MER1_type 0 1059 1 30 45 0 0 chr9 2731913 2731957 -139539487 + AT_rich Low_complexity Low_complexity 1 44 0 2034 158 0 0 chr9 2732098 2732408 -139539036 - AluSx SINE Alu -2 310 1 347 321 22 0 chr9 2732571 2732705 -139538739 + MIR SINE MIR 51 187 -75 1770 152 3 42 chr9 2732724 2733034 -139538410 + AluJo SINE Alu 1 298 -14 513 252 65 7 chr9 2735483 2735638 -139535806 - MER103 DNA DNA -1 165 2 563 228 55 118 chr9 2735802 2735968 -139535476 - MIR SINE MIR -10 252 77 191 59 0 29 chr9 2735968 2736002 -139535442 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2287 87 3 0 chr9 2736005 2736292 -139535152 - AluSp SINE Alu -25 288 1 563 228 55 118 chr9 2736292 2736375 -139535069 - MIR SINE MIR -187 75 15 935 235 11 0 chr9 2736754 2736941 -139534503 + MER5A DNA MER1_type 1 189 0 225 374 24 0 chr9 2736960 2737043 -139534401 - MIR SINE MIR -118 144 60 897 304 30 49 chr9 2737047 2737376 -139534068 + MLT1K LTR MaLR 2 324 -264 256 253 99 11 chr9 2737961 2738052 -139533392 - MIR SINE MIR -2 260 162 181 329 73 0 chr9 2738161 2738243 -139533201 - MIR SINE MIR -172 90 3 1969 155 3 0 chr9 2739606 2739903 -139531541 + AluJb SINE Alu 1 298 -14 271 252 225 0 chr9 2740748 2740859 -139530585 + MIR SINE MIR 57 192 -70 644 262 36 6 chr9 2741647 2741815 -139529629 - MIR3 SINE MIR -2 206 34 235 281 0 0 chr9 2742133 2742190 -139529254 + L2 LINE L2 3166 3222 -50 318 226 263 27 chr9 2742457 2742643 -139528801 + L1ME3A LINE L1 5931 6160 -10 22 70 0 0 chr9 2742667 2742710 -139528734 + AT_rich Low_complexity Low_complexity 1 43 0 4960 234 21 37 chr9 2742710 2743853 -139527591 + L1MC1 LINE L1 2115 3275 -3151 2761 23 0 0 chr9 2743853 2744155 -139527289 - AluY SINE Alu -9 302 1 4960 234 21 37 chr9 2744155 2744306 -139527138 + L1MC1 LINE L1 3275 3427 -2999 1809 133 33 0 chr9 2744306 2744576 -139526868 + AluJb SINE Alu 9 287 -25 4960 234 21 37 chr9 2744576 2745451 -139525993 + L1MC1 LINE L1 3427 4247 -2179 2845 108 13 5 chr9 2745453 2745850 -139525594 + MSTA LTR MaLR 1 400 -28 8051 31 0 0 chr9 2745850 2747452 -139523992 - L1PA4 LINE L1 0 6155 4553 6401 156 29 17 chr9 2747465 2748790 -139522654 + L1MC1 LINE L1 5272 6613 0 1504 140 42 45 chr9 2748853 2749117 -139522327 + L1PA15 LINE L1 5889 6151 -14 211 64 21 43 chr9 2749946 2749993 -139521451 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1335 272 60 8 chr9 2751197 2751561 -139519883 + LTR16C LTR ERVL 99 481 -10 378 222 0 0 chr9 2751628 2751709 -139519735 - MER57A LTR ERV1 0 403 323 406 274 41 45 chr9 2751871 2752134 -139519310 - MER57B LTR ERV1 -80 322 67 4766 133 32 1 chr9 2752228 2752948 -139518496 + Tigger2 DNA MER2_type 3 744 -1974 1401 152 19 60 chr9 2753014 2753049 -139518395 + Tigger2 DNA MER2_type 2461 2496 -222 2223 117 0 0 chr9 2753049 2753349 -139518095 - AluSx SINE Alu -12 300 1 1401 152 19 60 chr9 2753349 2753582 -139517862 + Tigger2 DNA MER2_type 2496 2718 0 643 234 102 24 chr9 2753931 2754136 -139517308 + MIR SINE MIR 10 230 -32 372 222 40 20 chr9 2755763 2755862 -139515582 - MIR3 SINE MIR 0 208 108 709 244 84 121 chr9 2756752 2757157 -139514287 - L2 LINE L2 0 3272 2883 2545 32 0 23 chr9 2757259 2757568 -139513876 + AluY SINE Alu 2 303 -8 537 330 45 5 chr9 2757568 2757789 -139513655 - Charlie8 DNA MER1_type -2187 230 1 1021 181 33 0 chr9 2757797 2757979 -139513465 + MER5A DNA MER1_type 1 188 -1 1291 200 77 0 chr9 2757989 2758289 -139513155 + MER33 DNA MER1_type 1 323 -1 182 335 88 59 chr9 2758306 2758545 -139512899 - L2 LINE L2 -486 2828 2583 816 273 0 6 chr9 2758704 2758887 -139512557 + MIR SINE MIR 12 193 -69 522 223 32 38 chr9 2759689 2759846 -139511598 + L1MC4a LINE L1 5784 5939 -1869 440 177 54 39 chr9 2759851 2759981 -139511463 - MER104 DNA Tc2 -13 167 36 1642 163 20 27 chr9 2760453 2760754 -139510690 + AluJo SINE Alu 1 299 -13 2190 120 10 0 chr9 2761076 2761376 -139510068 + AluSx SINE Alu 1 303 -9 2187 132 0 0 chr9 2762379 2762689 -139508755 + AluSx SINE Alu 1 310 -2 265 245 7 24 chr9 2762766 2762903 -139508541 + L1P3 LINE L1 5706 5833 -288 * 1740 216 41 19 chr9 2762895 2763535 -139507909 - L1ME LINE L1 -596 5570 4921 1284 201 108 2 chr9 2763539 2763998 -139507446 + L1ME1 LINE L1 5589 6164 -20 4082 233 56 43 chr9 2764039 2764348 -139507096 - L1MCb LINE L1 -3692 2872 2568 1819 172 0 10 chr9 2764348 2764650 -139506794 + AluJo SINE Alu 7 305 -7 4082 233 56 43 chr9 2764650 2766876 -139504568 - L1MCb LINE L1 -3996 2568 371 2220 139 150 5 chr9 2766876 2767250 -139504194 + MSTA LTR MaLR 1 428 0 8177 153 76 51 chr9 2767252 2767455 -139503989 + MSTA-int LTR MaLR 3 199 -1381 2279 110 0 0 chr9 2767455 2767765 -139503679 + AluY SINE Alu 2 311 0 8177 153 76 51 chr9 2767765 2769099 -139502345 + MSTA-int LTR MaLR 199 1579 -1 1934 168 129 31 chr9 2769102 2769490 -139501954 + MSTA LTR MaLR 3 428 0 4082 233 56 43 chr9 2769490 2769643 -139501801 - L1MCb LINE L1 -6194 370 6 254 174 221 0 chr9 2769764 2769850 -139501594 + L1ME4a LINE L1 6012 6116 -5 236 304 0 22 chr9 2769880 2769972 -139501472 + L1MC/D LINE L1 5813 5902 -1906 554 182 73 0 chr9 2770019 2770129 -139501315 + MER110A LTR ERV1 1 118 -350 470 174 55 9 chr9 2770222 2770331 -139501113 + MER110A LTR ERV1 355 468 0 2062 132 0 3 chr9 2770350 2770639 -139500805 - AluSx SINE Alu -19 293 6 1102 168 50 0 chr9 2771794 2771973 -139499471 - MER5A DNA MER1_type -1 188 1 198 292 101 11 chr9 2773189 2773278 -139498166 + MIR SINE MIR 104 200 -62 2281 69 7 36 chr9 2774181 2774487 -139496957 + AluY SINE Alu 1 297 -14 305 258 100 74 chr9 2774519 2774937 -139496507 + L1MC4 LINE L1 7611 8042 0 359 244 34 34 chr9 2777681 2777800 -139493644 - MER94 DNA DNA -15 119 1 435 236 47 66 chr9 2778394 2778606 -139492838 - L1MC4a LINE L1 -1971 5837 5630 1903 231 120 33 chr9 2779640 2780216 -139491228 + MLT1E2 LTR MaLR 1 626 0 653 190 0 0 chr9 2780952 2781052 -139490392 - AluS SINE Alu -212 100 1 33 25 0 0 chr9 2781123 2781163 -139490281 + AT_rich Low_complexity Low_complexity 1 40 0 1703 172 3 21 chr9 2781163 2781454 -139489990 - AluJo SINE Alu -21 291 6 632 209 98 33 chr9 2781519 2781734 -139489710 - MER96B DNA MER1_type? 0 417 189 550 217 9 0 chr9 2781784 2781890 -139489554 + MER5A DNA MER1_type 3 109 -80 2062 116 0 80 chr9 2782023 2782359 -139489085 + AluSx SINE Alu 1 309 -3 269 346 13 26 chr9 2782407 2782560 -139488884 - MIR SINE MIR -102 160 10 227 276 0 0 chr9 2782634 2782692 -139488752 + CT-rich Low_complexity Low_complexity 2 59 0 3001 138 72 23 chr9 2783271 2783827 -139487617 + L1MB2 LINE L1 5587 6169 -2 631 169 36 90 chr9 2784149 2784197 -139487247 + L1MD2 LINE L1 6186 6235 -124 2207 104 7 10 chr9 2784197 2784495 -139486949 + AluSg SINE Alu 1 297 -13 631 169 36 90 chr9 2784495 2784612 -139486832 + L1MD2 LINE L1 6235 6342 -17 2202 92 28 0 chr9 2785758 2786042 -139485402 + AluSx SINE Alu 1 292 -20 2247 106 10 3 chr9 2786054 2786365 -139485079 + AluSq SINE Alu 1 313 0 302 290 0 40 chr9 2787625 2787725 -139483719 - L1MC4 LINE L1 -1339 6703 6608 2414 71 3 0 chr9 2790997 2791294 -139480150 + AluSp SINE Alu 1 298 -15 1576 159 0 22 chr9 2791995 2792266 -139479178 + AluJb SINE Alu 5 269 -43 189 0 0 0 chr9 2792645 2792666 -139478778 + (A)n Simple_repeat Simple_repeat 1 21 0 2366 100 0 3 chr9 2792668 2792979 -139478465 + AluSp SINE Alu 1 310 -3 1930 143 3 19 chr9 2793896 2794211 -139477233 - AluJb SINE Alu -2 310 1 550 157 102 0 chr9 2795037 2795145 -139476299 + MER103 DNA DNA 2 120 -46 214 194 0 0 chr9 2795630 2795683 -139475761 + (CATA)n Simple_repeat Simple_repeat 1 53 0 221 371 124 12 chr9 2795689 2795948 -139475496 + L2 LINE L2 2384 2671 -643 271 239 65 43 chr9 2798432 2798524 -139472920 + MIR3 SINE MIR 9 102 -106 331 244 138 50 chr9 2798739 2798899 -139472545 + MIR SINE MIR 69 242 -20 2016 93 76 0 chr9 2800539 2800829 -139470615 + AluSq SINE Alu 2 313 0 190 324 121 44 chr9 2800930 2801112 -139470332 + L2 LINE L2 3077 3272 0 1196 311 153 46 chr9 2801778 2802991 -139468453 + L3 LINE CR1 213 1555 -22 577 282 4 73 chr9 2804306 2804540 -139466904 - MIR SINE MIR -42 220 3 300 206 41 14 chr9 2804627 2804700 -139466744 - Charlie8 DNA MER1_type 0 2417 2343 294 306 32 16 chr9 2804753 2804877 -139466567 - Charlie8 DNA MER1_type -2155 262 137 21 0 0 0 chr9 2805748 2805769 -139465675 + AT_rich Low_complexity Low_complexity 1 21 0 1374 103 5 5 chr9 2805898 2806082 -139465362 + U2 snRNA snRNA 4 187 -1 28 29 0 0 chr9 2809319 2809354 -139462090 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 2810111 2810133 -139461311 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr9 2810664 2810688 -139460756 + (T)n Simple_repeat Simple_repeat 1 24 0 1115 156 145 46 chr9 2811884 2812118 -139459326 + L1MB3 LINE L1 5874 6142 -41 2305 105 3 6 chr9 2812118 2812432 -139459012 + AluSp SINE Alu 1 313 0 1115 156 145 46 chr9 2812432 2812479 -139458965 + L1MB3 LINE L1 6142 6183 0 342 0 0 0 chr9 2813090 2813128 -139458316 + (A)n Simple_repeat Simple_repeat 1 38 0 2438 71 0 0 chr9 2813274 2813570 -139457874 + AluSg SINE Alu 7 302 -8 224 229 0 0 chr9 2814523 2814571 -139456873 + (CTA)n Simple_repeat Simple_repeat 2 49 0 820 264 37 16 chr9 2814591 2814837 -139456607 - MIR SINE MIR -9 253 3 6396 163 53 103 chr9 2815038 2815314 -139456130 - Tigger6b DNA MER2_type -12 1585 1297 1538 182 18 14 chr9 2815314 2815594 -139455850 - AluJo SINE Alu -31 281 1 6396 163 53 103 chr9 2815594 2815960 -139455484 - Tigger6b DNA MER2_type -300 1297 914 2094 122 6 28 chr9 2815960 2816279 -139455165 - AluSx SINE Alu 0 312 1 1830 121 27 40 chr9 2816282 2816579 -139454865 - AluSx SINE Alu -19 293 1 6396 163 53 103 chr9 2816579 2817100 -139454344 - Tigger6b DNA MER2_type -685 912 366 2031 141 3 7 chr9 2817100 2817399 -139454045 - AluSx SINE Alu -14 298 1 6396 163 53 103 chr9 2817399 2817801 -139453643 - Tigger6b DNA MER2_type -1231 366 100 2052 184 71 0 chr9 2817801 2818165 -139453279 + MLT1B LTR MaLR 1 390 0 6396 163 53 103 chr9 2818165 2818258 -139453186 - Tigger6b DNA MER2_type -1497 100 4 180 245 0 0 chr9 2818788 2818841 -139452603 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 2583 102 8 25 chr9 2819130 2819307 -139452137 + THE1A LTR MaLR 1 170 -185 2080 121 13 10 chr9 2819307 2819613 -139451831 - AluSx SINE Alu -5 307 1 2583 102 8 25 chr9 2819613 2819796 -139451648 + THE1A LTR MaLR 170 355 0 1042 173 6 0 chr9 2820040 2820208 -139451236 + AluJb SINE Alu 1 169 -143 1080 32 0 0 chr9 2820231 2820355 -139451089 + L1PA4 LINE L1 6029 6152 -3 724 183 8 38 chr9 2820851 2820982 -139450462 + FRAM SINE Alu 1 127 -49 2233 89 0 7 chr9 2820990 2821283 -139450161 - AluSx SINE Alu -19 293 3 4295 103 2 0 chr9 2821788 2822341 -139449103 + MER41A LTR ERV1 1 554 0 1930 131 147 6 chr9 2822483 2822803 -139448641 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr9 2823380 2823401 -139448043 + AT_rich Low_complexity Low_complexity 1 21 0 2125 109 3 20 chr9 2823519 2823821 -139447623 - AluSx SINE Alu -5 307 11 1709 194 118 78 chr9 2824357 2824976 -139446468 + LTR48B LTR ERV1 1 644 0 1460 126 141 27 chr9 2826245 2826629 -139444815 + LTR54 LTR ERV1 1 510 0 192 211 70 35 chr9 2827511 2827568 -139443876 + MIR SINE MIR 108 166 -96 2057 158 12 48 chr9 2828789 2829188 -139442256 + LTR8A LTR ERV1 35 419 -308 1371 171 62 43 chr9 2829404 2829708 -139441736 + LTR8A LTR ERV1 418 727 0 419 286 8 25 chr9 2830119 2830238 -139441206 - MIR SINE MIR -70 138 22 636 289 169 16 chr9 2831055 2831363 -139440081 - L2 LINE L2 0 3313 2959 2150 132 3 0 chr9 2832362 2832665 -139438779 + AluSx SINE Alu 1 304 -8 2226 116 0 0 chr9 2832710 2833004 -139438440 + AluSg SINE Alu 2 295 -15 1858 123 0 4 chr9 2833007 2833260 -139438184 + AluSx SINE Alu 2 253 -59 299 140 80 0 chr9 2833345 2833394 -139438050 - MLT1A1 LTR MaLR 0 365 313 2934 162 30 16 chr9 2833394 2833894 -139437550 + MLT2B2 LTR ERVL 1 507 -8 1193 208 96 7 chr9 2833896 2834189 -139437255 - MLT1A1 LTR MaLR -46 319 1 320 308 10 29 chr9 2834190 2834294 -139437150 - MIR SINE MIR -90 118 17 571 277 126 26 chr9 2834762 2834993 -139436451 - MIR SINE MIR -2 260 7 1491 178 87 11 chr9 2835266 2835553 -139435891 + AluJo SINE Alu 1 309 -3 22 70 0 0 chr9 2835989 2836032 -139435412 + AT_rich Low_complexity Low_complexity 1 43 0 1582 102 5 0 chr9 2836885 2837100 -139434344 - AluSc SINE Alu -4 305 90 424 41 0 0 chr9 2837100 2837149 -139434295 - AluSc SINE Alu -261 50 2 234 176 0 0 chr9 2838105 2838156 -139433288 + L1MC4 LINE L1 6653 6703 -1339 255 81 27 0 chr9 2838460 2838497 -139432947 - tRNA-Ser-TCC tRNA tRNA -44 41 4 1843 181 0 0 chr9 2838695 2838988 -139432456 + AluJb SINE Alu 1 293 -19 1376 286 46 52 chr9 2838990 2839424 -139432020 + MER21B LTR ERV1 20 450 -413 2183 97 0 0 chr9 2839424 2839712 -139431732 - AluY SINE Alu -23 288 1 1376 286 46 52 chr9 2839712 2839976 -139431468 + MER21B LTR ERV1 450 714 -149 689 218 20 27 chr9 2840078 2840225 -139431219 + MER69 DNA AcHobo 2 147 -1079 735 249 150 48 chr9 2841098 2841492 -139429952 + MLT1J1 LTR MaLR 1 434 -12 312 320 126 48 chr9 2841823 2842132 -139429312 + L3 LINE CR1 1237 1569 -8 274 205 96 36 chr9 2842790 2842873 -139428571 - L2 LINE L2 -1 3271 3184 2289 107 0 0 chr9 2843059 2843359 -139428085 + AluSx SINE Alu 1 300 -12 379 175 164 22 chr9 2844297 2844423 -139427021 + MIR3 SINE MIR 61 202 -6 200 213 33 49 chr9 2844505 2844566 -139426878 + MIR3 SINE MIR 134 193 -15 501 269 143 45 chr9 2848273 2848581 -139422863 + MER102b DNA MER1_type 3 340 -1 844 248 71 65 chr9 2848863 2849186 -139422258 - MER102a DNA MER1_type -5 325 1 274 309 148 27 chr9 2849626 2849775 -139421669 + MIR SINE MIR 47 213 -49 23 33 0 0 chr9 2850014 2850044 -139421400 + AT_rich Low_complexity Low_complexity 1 30 0 408 200 0 12 chr9 2851662 2851742 -139419702 + Tigger5 DNA MER2_type 1 79 -2244 389 143 0 0 chr9 2851773 2851836 -139419608 + Tigger5 DNA MER2_type 2261 2323 0 186 43 0 0 chr9 2853495 2853518 -139417926 + (CA)n Simple_repeat Simple_repeat 1 23 0 453 235 71 77 chr9 2853593 2853916 -139417528 + L1ME4a LINE L1 5531 5851 -270 229 317 158 17 chr9 2854267 2854387 -139417057 + L2 LINE L2 3119 3255 -17 364 250 22 0 chr9 2854926 2855018 -139416426 - MER58 DNA MER1_type -2326 94 1 321 262 24 0 chr9 2856646 2856730 -139414714 + L2 LINE L2 3183 3268 -4 184 313 78 55 chr9 2857036 2857164 -139414280 + MER5B DNA MER1_type 27 157 -21 1990 150 0 16 chr9 2857327 2857641 -139413803 - AluJb SINE Alu 0 312 4 417 281 128 18 chr9 2857943 2858107 -139413337 + MIR SINE MIR 81 262 0 3873 141 15 3 chr9 2860439 2861051 -139410393 + LTR31 LTR ERV1 1 619 0 2028 103 33 0 chr9 2861231 2861535 -139409909 + AluSx SINE Alu 1 313 0 38 61 0 0 chr9 2861698 2861764 -139409680 + AT_rich Low_complexity Low_complexity 1 66 0 220 372 12 12 chr9 2862399 2862485 -139408959 + L2 LINE L2 3129 3214 -58 289 283 31 101 chr9 2862659 2862818 -139408626 + MIR SINE MIR 114 261 -1 2197 99 0 26 chr9 2863311 2863615 -139407829 + AluSx SINE Alu 17 312 0 32 26 0 0 chr9 2864394 2864433 -139407011 + AT_rich Low_complexity Low_complexity 1 39 0 203 302 0 0 chr9 2864927 2864980 -139406464 + L2 LINE L2 3261 3313 0 227 79 26 0 chr9 2865148 2865186 -139406258 + (TC)n Simple_repeat Simple_repeat 2 40 0 237 65 0 0 chr9 2865186 2865217 -139406227 + (CA)n Simple_repeat Simple_repeat 1 31 0 319 241 38 13 chr9 2865292 2865371 -139406073 - L2 LINE L2 -8 3305 3225 893 215 21 0 chr9 2865500 2865686 -139405758 + MER58A DNA MER1_type 35 224 0 667 292 23 88 chr9 2865695 2866126 -139405318 - L2 LINE L2 -218 3054 2649 311 0 26 0 chr9 2866677 2866716 -139404728 + (CA)n Simple_repeat Simple_repeat 2 41 0 2021 141 39 33 chr9 2867688 2868050 -139403394 + THE1B LTR MaLR 1 364 0 23 54 0 0 chr9 2868074 2868111 -139403333 + AT_rich Low_complexity Low_complexity 1 37 0 1965 147 7 7 chr9 2868128 2868428 -139403016 - AluSx SINE Alu -12 300 1 254 330 48 10 chr9 2869734 2869837 -139401607 - MIR SINE MIR -107 155 49 1970 100 30 40 chr9 2869886 2870187 -139401257 - AluSq SINE Alu -15 298 1 2333 88 0 0 chr9 2873465 2873760 -139397684 + AluSg SINE Alu 1 295 -15 383 122 22 33 chr9 2873817 2873907 -139397537 - L1MA9 LINE L1 -17 6295 6207 481 328 20 10 chr9 2874018 2874219 -139397225 - MIR SINE MIR -7 255 53 458 233 112 99 chr9 2875094 2875567 -139395877 - Charlie7 DNA MER1_type -2086 526 48 2399 238 40 42 chr9 2876971 2877749 -139393695 + L1ME1 LINE L1 5374 6149 -17 534 285 95 18 chr9 2878229 2878450 -139392994 - MIR SINE MIR -12 250 13 28 29 0 0 chr9 2879948 2879983 -139391461 + AT_rich Low_complexity Low_complexity 1 35 0 244 298 21 21 chr9 2882197 2882291 -139389153 - MIR3 SINE MIR -2 206 113 258 274 71 0 chr9 2882547 2882660 -139388784 + Charlie8 DNA MER1_type 44 164 -2253 23 0 0 0 chr9 2883314 2883337 -139388107 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr9 2884431 2884478 -139386966 + (CA)n Simple_repeat Simple_repeat 2 48 0 405 0 0 0 chr9 2886497 2886542 -139384902 + (CA)n Simple_repeat Simple_repeat 1 45 0 218 348 59 30 chr9 2887857 2887992 -139383452 - L2 LINE L2 0 3313 3175 1039 228 39 4 chr9 2889195 2889427 -139382017 + Charlie1a DNA MER1_type 1 240 -1215 255 222 0 0 chr9 2889558 2889621 -139381823 + MER103 DNA DNA 8 70 -96 249 250 113 40 chr9 2889709 2889833 -139381611 - MER94 DNA DNA -1 133 1 2290 103 3 3 chr9 2889875 2890186 -139381258 - AluY SINE Alu 0 311 1 2211 128 0 3 chr9 2890353 2890659 -139380785 - AluSx SINE Alu -7 305 1 395 297 39 39 chr9 2891375 2891530 -139379914 - MIR SINE MIR -76 186 32 197 160 0 40 chr9 2892281 2892331 -139379113 + GA-rich Low_complexity Low_complexity 3 50 0 1218 124 0 0 chr9 2893027 2893204 -139378240 + AluSq SINE Alu 137 313 0 1906 147 7 0 chr9 2893985 2894264 -139377180 - AluJb SINE Alu -31 281 1 636 273 164 49 chr9 2895697 2896185 -139375259 + LTR67 LTR ERVL 3 546 -11 22 35 0 0 chr9 2897983 2898012 -139373432 + AT_rich Low_complexity Low_complexity 1 29 0 1260 133 10 0 chr9 2898870 2899073 -139372371 + L1PA16 LINE L1 5962 6166 0 2110 46 0 11 chr9 2899272 2899535 -139371909 - AluY SINE Alu -12 299 40 2385 77 0 0 chr9 2899782 2900079 -139371365 + AluY SINE Alu 1 297 -14 379 275 23 105 chr9 2901261 2901432 -139370012 + MIR SINE MIR 29 185 -77 523 202 9 9 chr9 2901593 2901702 -139369742 + L2 LINE L2 3205 3313 0 2362 68 0 3 chr9 2903803 2904095 -139367349 - AluY SINE Alu -20 291 1 523 303 0 0 chr9 2904536 2904678 -139366766 - MIR SINE MIR -6 256 115 318 268 94 79 chr9 2906190 2906317 -139365127 + L2 LINE L2 3137 3265 -7 23 0 0 0 chr9 2906761 2906784 -139364660 + AT_rich Low_complexity Low_complexity 1 23 0 310 185 0 0 chr9 2906800 2906865 -139364579 - L1MB3 LINE L1 -28 6155 6091 203 182 0 0 chr9 2908011 2908044 -139363400 + polypyrimidine Low_complexity Low_complexity 2 34 0 394 258 61 25 chr9 2908549 2908747 -139362697 - L1MC5 LINE L1 -54 7907 7703 288 0 0 0 chr9 2908847 2908879 -139362565 + (T)n Simple_repeat Simple_repeat 1 32 0 1862 194 11 14 chr9 2911541 2911907 -139359537 + MLT1A1 LTR MaLR 1 365 0 344 302 31 16 chr9 2911910 2912039 -139359405 + MIR3 SINE MIR 56 186 -22 260 280 93 104 chr9 2915385 2915578 -139355866 - MIR SINE MIR -48 214 24 2282 111 11 3 chr9 2915672 2916022 -139355422 + L1PA16 LINE L1 5805 6157 -9 2257 93 0 7 chr9 2916504 2916806 -139354638 - AluSx SINE Alu -12 300 1 192 77 0 0 chr9 2918649 2918675 -139352769 + (A)n Simple_repeat Simple_repeat 1 26 0 290 282 174 0 chr9 2920572 2920721 -139350723 - MIR SINE MIR -71 191 17 865 172 96 24 chr9 2920784 2920993 -139350451 + MER58A DNA MER1_type 1 224 0 42 48 0 0 chr9 2921657 2921720 -139349724 + GC_rich Low_complexity Low_complexity 1 63 0 29 70 0 0 chr9 2921797 2921854 -139349590 + GC_rich Low_complexity Low_complexity 1 57 0 329 297 39 8 chr9 2921890 2922018 -139349426 + GA-rich Low_complexity Low_complexity 4 135 0 189 307 136 0 chr9 2923024 2923112 -139348332 + L3b LINE CR1 1327 1426 -157 353 69 0 17 chr9 2923118 2923176 -139348268 + (TG)n Simple_repeat Simple_repeat 1 57 0 335 362 98 11 chr9 2923497 2923671 -139347773 + L3b LINE CR1 1392 1580 -3 662 239 0 7 chr9 2924283 2924425 -139347019 + MIR SINE MIR 58 198 -64 389 256 23 0 chr9 2926977 2927063 -139344381 + MIR SINE MIR 2 89 -173 2122 167 6 8 chr9 2927379 2927745 -139343699 + MLT1A1 LTR MaLR 1 365 0 657 129 0 0 chr9 2929127 2929243 -139342201 + (CTG)n Simple_repeat Simple_repeat 3 118 0 1105 150 59 24 chr9 2929706 2929960 -139341484 - MER33 DNA MER1_type -32 292 30 181 238 24 0 chr9 2930140 2930182 -139341262 - L2 LINE L2 -21 3292 3250 790 302 21 11 chr9 2930203 2930488 -139340956 - LTR16C LTR ERVL -9 482 195 489 303 45 11 chr9 2930661 2930839 -139340605 - MIR SINE MIR -59 203 20 303 71 0 0 chr9 2932778 2932820 -139338624 + (CA)n Simple_repeat Simple_repeat 2 43 0 2215 97 0 3 chr9 2933655 2933989 -139337455 + AluSx SINE Alu 1 333 0 1651 190 72 43 chr9 2934643 2934731 -139336713 + MLT1C LTR MaLR 1 85 -382 2355 86 3 0 chr9 2934731 2935033 -139336411 - AluSc SINE Alu -6 303 1 1651 190 72 43 chr9 2935033 2935386 -139336058 + MLT1C LTR MaLR 85 455 -12 322 351 73 26 chr9 2935508 2935699 -139335745 + MIR SINE MIR 35 234 -28 278 26 26 0 chr9 2936246 2936285 -139335159 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 331 316 35 29 chr9 2937761 2937932 -139333512 + L1MC4a LINE L1 5802 5973 -1835 2045 142 18 161 chr9 2938243 2938850 -139332594 + MLT2B1 LTR ERVL 1 520 0 233 283 123 9 chr9 2941371 2941477 -139329967 + L2 LINE L2 3191 3308 -5 1767 151 16 16 chr9 2941533 2941838 -139329606 - AluJo SINE Alu -7 305 1 310 304 126 0 chr9 2942845 2942980 -139328464 + MIR3 SINE MIR 32 183 -25 184 311 59 37 chr9 2944117 2944252 -139327192 - MIR3 SINE MIR -41 167 30 256 254 0 17 chr9 2946582 2946641 -139324803 + MIR SINE MIR 98 155 -107 23 0 0 0 chr9 2951308 2951331 -139320113 + GC_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr9 2955873 2955894 -139315550 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2146 125 0 0 chr9 2956917 2957220 -139314224 - AluSx SINE Alu -9 303 1 237 33 0 0 chr9 2957968 2957998 -139313446 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 355 225 163 31 chr9 2958177 2958306 -139313138 - MIR SINE MIR -28 234 89 1180 250 72 88 chr9 2958306 2958684 -139312760 + Charlie7 DNA MER1_type 1 384 -2228 2509 55 3 0 chr9 2958684 2958992 -139312452 - AluY SINE Alu -2 309 1 1180 250 72 88 chr9 2958992 2959198 -139312246 + Charlie7 DNA MER1_type 384 573 -2039 2228 105 3 16 chr9 2959198 2959512 -139311932 + AluSq SINE Alu 1 310 -3 1180 250 72 88 chr9 2959512 2959661 -139311783 + Charlie7 DNA MER1_type 573 723 -1889 402 153 137 8 chr9 2959659 2959783 -139311661 + Charlie7 DNA MER1_type 2432 2571 -41 * 225 65 0 0 chr9 2959783 2959814 -139311630 + (T)n Simple_repeat Simple_repeat 1 31 0 2289 88 3 0 chr9 2962319 2962614 -139308830 + AluSg SINE Alu 1 296 -14 333 0 0 0 chr9 2964017 2964054 -139307390 + (CCCTAA)n Simple_repeat Simple_repeat 5 41 0 22 0 0 0 chr9 2964177 2964199 -139307245 + AT_rich Low_complexity Low_complexity 1 22 0 248 200 0 27 chr9 2964346 2964421 -139307023 - L1ME4a LINE L1 -2 6119 6047 24 0 0 0 chr9 2965520 2965544 -139305900 + AT_rich Low_complexity Low_complexity 1 24 0 768 204 250 24 chr9 2965654 2965982 -139305462 - L1M4 LINE L1 -3248 2898 2497 1183 286 66 29 chr9 2966072 2966632 -139304812 - L1MC4a LINE L1 -1899 5909 5324 2453 76 0 0 chr9 2966632 2966935 -139304509 - AluY SINE Alu -8 303 1 1183 286 66 29 chr9 2966935 2966965 -139304479 - L1MC4a LINE L1 -2484 5324 5297 413 239 77 26 chr9 2967063 2967180 -139304264 + MARNA DNA Mariner 286 408 -178 206 261 31 0 chr9 2967524 2967589 -139303855 + (TATG)n Simple_repeat Simple_repeat 4 70 0 398 274 98 72 chr9 2970510 2970605 -139300839 - L1ME4a LINE L1 -223 5947 5856 931 240 34 5 chr9 2970605 2970813 -139300631 - MER58C DNA MER1_type 0 215 2 398 274 98 72 chr9 2970813 2971035 -139300409 - L1ME4a LINE L1 -314 5856 5622 266 222 111 127 chr9 2971368 2971557 -139299887 - MER102a DNA MER1_type 0 330 145 683 189 47 30 chr9 2971561 2971730 -139299714 - L1MB2 LINE L1 0 6171 6000 296 339 18 0 chr9 2972479 2972591 -139298853 - MIR SINE MIR -70 192 79 252 0 0 0 chr9 2973358 2973386 -139298058 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2191 118 3 0 chr9 2973587 2973883 -139297561 + AluSx SINE Alu 1 297 -15 242 329 24 0 chr9 2974173 2974255 -139297189 + MIR SINE MIR 179 262 0 222 329 200 0 chr9 2974538 2974678 -139296766 + MIR3 SINE MIR 20 187 -21 246 94 0 0 chr9 2975581 2975613 -139295831 + U6 snRNA snRNA 1 32 -75 753 212 35 6 chr9 2975894 2976064 -139295380 - MER5A DNA MER1_type -11 178 4 189 148 0 0 chr9 2976250 2976277 -139295167 + L2 LINE L2 3263 3289 -24 210 143 0 0 chr9 2976450 2976485 -139294959 - MIR SINE MIR -14 248 214 1291 267 122 13 chr9 2979176 2979554 -139291890 - MLT1G1 LTR MaLR -176 419 1 1822 161 10 22 chr9 2980643 2980954 -139290490 - AluJo SINE Alu -5 307 1 2363 82 0 0 chr9 2981049 2981342 -139290102 - AluY SINE Alu -18 293 1 487 110 0 0 chr9 2982097 2982170 -139289274 + Alu SINE Alu 235 307 -3 501 224 179 0 chr9 2982922 2983078 -139288366 - MIR SINE MIR -76 186 3 452 219 67 37 chr9 2983265 2983444 -139288000 - MER104 DNA Tc2 -3 177 1 2462 57 7 0 chr9 2983657 2983958 -139287486 + AluY SINE Alu 1 303 -8 240 221 0 73 chr9 2983961 2983997 -139287447 + Tigger5 DNA MER2_type 1 31 -335 2023 141 0 0 chr9 2983997 2984281 -139287163 - AluSx SINE Alu -16 296 13 240 221 0 73 chr9 2984281 2984312 -139287132 + Tigger5 DNA MER2_type 31 63 -303 2315 56 10 3 chr9 2985338 2985626 -139285818 + AluY SINE Alu 1 290 -21 284 284 210 62 chr9 2986279 2986779 -139284665 + HAL1 LINE L1 1 574 -1933 291 274 146 46 chr9 2986802 2987152 -139284292 + HAL1 LINE L1 654 1038 -1469 1118 209 25 4 chr9 2987173 2987408 -139284036 + AluJb SINE Alu 68 307 -5 1389 250 113 53 chr9 2987411 2988094 -139283350 + HAL1 LINE L1 1095 1818 -689 814 190 42 60 chr9 2988211 2988427 -139283017 - MLT1L LTR MaLR -7 608 397 644 256 207 33 chr9 2988851 2989301 -139282143 + HAL1 LINE L1 1956 2483 -24 192 287 35 46 chr9 2990228 2990315 -139281129 + L2 LINE L2 3019 3104 -168 188 178 67 67 chr9 2991063 2991108 -139280336 + L2 LINE L2 3142 3186 -86 728 266 13 42 chr9 2991269 2991506 -139279938 + MIR SINE MIR 30 259 -3 488 320 136 19 chr9 2991963 2992169 -139279275 - MIR SINE MIR -15 247 18 281 33 101 0 chr9 2992548 2992592 -139278852 + MLT2A1 LTR ERVL 402 444 0 * 419 205 68 43 chr9 2992592 2992708 -139278736 - LTR8 LTR ERV1 -572 119 1 388 300 7 57 chr9 2992738 2992878 -139278566 - MIR3 SINE MIR -31 177 45 2234 117 45 48 chr9 2994000 2994376 -139277068 - THE1C LTR MaLR 0 375 1 988 198 82 97 chr9 2994449 2994903 -139276541 - LTR37B LTR ERV1 -16 452 6 313 338 76 6 chr9 2995049 2995206 -139276238 - MIR SINE MIR -55 207 40 2213 92 0 0 chr9 2995295 2995577 -139275867 + AluY SINE Alu 1 282 -29 210 143 0 0 chr9 3097061 3097096 -139174348 + MIR SINE MIR 214 248 -14 188 148 0 0 chr9 3097269 3097296 -139174148 - L2 LINE L2 -24 3289 3263 229 94 0 0 chr9 3097763 3097795 -139173649 - U6 snRNA snRNA -75 32 1 216 329 200 0 chr9 3098698 3098838 -139172606 - MIR3 SINE MIR -21 187 20 243 329 24 0 chr9 3099121 3099203 -139172241 - MIR SINE MIR 0 262 179 2195 118 3 0 chr9 3099493 3099789 -139171655 - AluSx SINE Alu -15 297 1 252 0 0 0 chr9 3099990 3100018 -139171426 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 307 339 18 0 chr9 3100785 3100897 -139170547 + MIR SINE MIR 79 192 -70 588 138 62 8 chr9 3101683 3101813 -139169631 + L1MB2 LINE L1 6033 6169 -2 312 298 93 15 chr9 3102453 3102562 -139168882 + L1ME3A LINE L1 5727 5826 -344 843 240 34 5 chr9 3102562 3102770 -139168674 + MER58C DNA MER1_type 2 215 0 312 298 93 15 chr9 3102770 3102865 -139168579 + L1ME3A LINE L1 5826 5947 -223 206 261 31 0 chr9 3105786 3105851 -139165593 + (CATA)n Simple_repeat Simple_repeat 4 70 0 366 239 77 26 chr9 3106195 3106312 -139165132 - MARNA DNA Mariner -178 408 286 961 289 66 29 chr9 3106410 3106440 -139165004 + L1MC4a LINE L1 5297 5324 -2484 2382 82 0 0 chr9 3106440 3106743 -139164701 + AluY SINE Alu 1 303 -8 961 289 66 29 chr9 3106743 3107303 -139164141 + L1MC4a LINE L1 5324 5909 -1899 671 236 94 29 chr9 3107393 3107669 -139163775 + L1M4 LINE L1 2497 2790 -3356 24 0 0 0 chr9 3107831 3107855 -139163589 + AT_rich Low_complexity Low_complexity 1 24 0 262 143 14 100 chr9 3107959 3108099 -139163345 + (TTATA)n Simple_repeat Simple_repeat 1 128 0 22 0 0 0 chr9 3109177 3109199 -139162245 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr9 3109322 3109359 -139162085 + (TTAGGG)n Simple_repeat Simple_repeat 5 41 0 2277 88 3 0 chr9 3110761 3111056 -139160388 - AluSg SINE Alu -14 296 1 22 35 0 0 chr9 3112106 3112135 -139159309 + AT_rich Low_complexity Low_complexity 1 29 0 902 197 53 61 chr9 3113028 3113256 -139158188 - MIR SINE MIR -30 232 7 1698 188 7 16 chr9 3113309 3113617 -139157827 - AluJo SINE Alu -7 305 1 301 215 89 13 chr9 3115332 3115411 -139156033 + MIR SINE MIR 178 262 0 321 272 88 24 chr9 3117483 3117608 -139153836 - MIR SINE MIR -12 250 118 192 284 68 14 chr9 3117707 3117781 -139153663 + MIR SINE MIR 185 262 0 593 296 35 6 chr9 3119852 3120021 -139151423 - MIR SINE MIR -41 221 48 192 77 0 0 chr9 3120290 3120316 -139151128 + (A)n Simple_repeat Simple_repeat 1 26 0 1868 151 13 23 chr9 3120407 3120706 -139150738 + AluJb SINE Alu 1 296 -16 264 264 103 35 chr9 3121922 3122009 -139149435 + L2 LINE L2 3149 3241 -31 222 37 0 0 chr9 3122076 3122103 -139149341 + (TG)n Simple_repeat Simple_repeat 2 28 0 501 134 47 12 chr9 3125114 3125284 -139146160 - L1MD3 LINE L1 -13 7982 7755 2992 204 58 133 chr9 3125311 3125545 -139145899 - L1MD3 LINE L1 -346 7462 7212 331 269 65 0 chr9 3125545 3125653 -139145791 - MLT1F1 LTR MaLR -452 115 1 2992 204 58 133 chr9 3125653 3126577 -139144867 - L1MD3 LINE L1 -596 7212 6291 1776 133 68 11 chr9 3126583 3126847 -139144597 + AluSx SINE Alu 7 285 -27 494 284 14 14 chr9 3126847 3126988 -139144456 - L1MD3 LINE L1 -701 7294 7154 993 260 66 27 chr9 3127004 3127411 -139144033 - L1MC3 LINE L1 -1500 6285 5863 802 264 60 87 chr9 3127840 3128276 -139143168 + L2 LINE L2 2105 2528 -786 252 333 49 24 chr9 3128423 3128546 -139142898 + L2 LINE L2 2746 2871 -443 2682 36 0 0 chr9 3128847 3129154 -139142290 - AluY SINE Alu -4 307 1 391 288 106 7 chr9 3129760 3129962 -139141482 + MIR SINE MIR 2 262 0 191 77 0 0 chr9 3130038 3130064 -139141380 - MIR SINE MIR -117 145 120 968 226 102 37 chr9 3130065 3130468 -139140976 - MLT1C LTR MaLR -33 434 6 180 247 173 12 chr9 3130692 3130773 -139140671 - MIR SINE MIR -42 220 127 461 264 39 0 chr9 3131544 3131673 -139139771 + MIR SINE MIR 81 214 -48 2134 118 7 3 chr9 3131742 3132047 -139139397 + AluSx SINE Alu 1 306 -6 370 294 115 23 chr9 3132051 3132269 -139139175 - MLT1L LTR MaLR -18 597 360 509 283 88 0 chr9 3132606 3132765 -139138679 - MER5B DNA MER1_type -2 176 4 2066 108 35 0 chr9 3132789 3133077 -139138367 - AluSx SINE Alu -14 298 1 5775 53 10 3 chr9 3134222 3134951 -139136493 + L1PA5 LINE L1 5420 6153 -1 786 156 7 22 chr9 3135071 3135206 -139136238 - FLAM_C SINE Alu 0 133 1 762 364 24 12 chr9 3135259 3135685 -139135759 - LTR16B LTR ERVL 0 464 34 1763 349 31 35 chr9 3135750 3137179 -139134265 - ERVL LTR ERVL -17 5317 3979 689 287 7 6 chr9 3137208 3137495 -139133949 - ERVL LTR ERVL -2852 2912 2565 1082 270 59 23 chr9 3137515 3137956 -139133488 - HERV16 LTR ERVL -3855 1141 685 1246 276 53 29 chr9 3137983 3138436 -139133008 - LTR16C LTR ERVL -27 464 1 3351 153 23 22 chr9 3138759 3139296 -139132148 + MER7C DNA MER2_type 1 541 -2487 2571 58 0 0 chr9 3139296 3139604 -139131840 - AluY SINE Alu -3 308 1 3351 153 23 22 chr9 3139604 3139667 -139131777 + MER7C DNA MER2_type 541 602 0 317 284 30 8 chr9 3140778 3140912 -139130532 + GA-rich Low_complexity Low_complexity 5 141 0 1761 162 10 23 chr9 3140915 3141217 -139130227 + AluJo SINE Alu 1 298 -14 337 174 0 23 chr9 3141217 3141303 -139130141 + GA-rich Low_complexity Low_complexity 2 85 0 1353 267 144 11 chr9 3141840 3142501 -139128943 - L2 LINE L2 -2 3311 2549 1115 242 11 0 chr9 3143323 3143596 -139127848 - Charlie4a DNA MER1_type -32 476 201 21 82 0 0 chr9 3143613 3143662 -139127782 + AT_rich Low_complexity Low_complexity 1 49 0 200 315 0 0 chr9 3143668 3143722 -139127722 + T-rich Low_complexity Low_complexity 2 55 0 2211 119 3 3 chr9 3143738 3144050 -139127394 + AluSq SINE Alu 1 312 -1 39 22 0 0 chr9 3144061 3144107 -139127337 + AT_rich Low_complexity Low_complexity 1 46 0 258 56 0 0 chr9 3144109 3144145 -139127299 + (TA)n Simple_repeat Simple_repeat 2 37 0 1739 187 0 13 chr9 3144370 3144670 -139126774 + AluJo SINE Alu 4 299 -13 213 163 0 0 chr9 3144766 3144815 -139126629 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr9 3144843 3144866 -139126578 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 3144916 3144946 -139126498 + AT_rich Low_complexity Low_complexity 1 30 0 342 354 161 32 chr9 3144975 3145447 -139125997 + L3 LINE CR1 1 533 -1044 466 350 75 52 chr9 3145606 3146141 -139125303 + L3 LINE CR1 980 1526 -51 2287 94 0 3 chr9 3146213 3146510 -139124934 + AluSq SINE Alu 6 301 -12 29 60 0 0 chr9 3146746 3146796 -139124648 + AT_rich Low_complexity Low_complexity 1 50 0 180 262 24 0 chr9 3146811 3146853 -139124591 + L3 LINE CR1 1533 1575 -2 257 172 151 0 chr9 3147188 3147281 -139124163 - L1ME LINE L1 -374 5788 5682 21 0 0 0 chr9 3147315 3147336 -139124108 + AT_rich Low_complexity Low_complexity 1 21 0 252 311 67 17 chr9 3147618 3147737 -139123707 - L1ME3A LINE L1 -28 6142 6018 2495 152 16 28 chr9 3148735 3149168 -139122276 + MSTA LTR MaLR 1 428 0 2654 92 20 8 chr9 3149232 3149625 -139121819 + L1PA13 LINE L1 5764 6161 -2 248 267 187 0 chr9 3150751 3150826 -139120618 - L1ME LINE L1 -521 5600 5512 2137 91 0 70 chr9 3151419 3151604 -139119840 - AluSg SINE Alu -4 306 152 207 0 0 0 chr9 3151604 3151627 -139119817 + (TA)n Simple_repeat Simple_repeat 2 24 0 2137 91 0 70 chr9 3151627 3151770 -139119674 - AluSg SINE Alu -158 152 1 1899 176 47 29 chr9 3152594 3153002 -139118442 - MLT1C LTR MaLR -2 465 51 180 0 0 0 chr9 3153020 3153040 -139118404 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2269 87 10 10 chr9 3153047 3153347 -139118097 - AluSc SINE Alu -9 300 1 1910 100 46 0 chr9 3153347 3153608 -139117836 - L1PA15 LINE L1 -12 6153 5881 340 323 43 18 chr9 3156161 3156244 -139115200 - MIR SINE MIR -32 230 151 1585 140 23 57 chr9 3156244 3156544 -139114900 - AluJo SINE Alu -10 302 13 340 323 43 18 chr9 3156544 3156624 -139114820 - MIR SINE MIR -111 151 63 368 314 36 6 chr9 3157096 3157267 -139114177 + MIR SINE MIR 40 213 -49 189 273 23 0 chr9 3157326 3157370 -139114074 - L2 LINE L2 -86 3186 3142 302 361 87 21 chr9 3157458 3157699 -139113745 + L3 LINE CR1 1273 1529 -48 287 310 120 6 chr9 3157799 3157957 -139113487 + L2 LINE L2 2222 2397 -917 204 239 0 22 chr9 3158680 3158726 -139112718 + (TAGG)n Simple_repeat Simple_repeat 2 46 0 194 62 31 0 chr9 3159303 3159335 -139112109 + (CA)n Simple_repeat Simple_repeat 1 33 0 267 336 9 0 chr9 3161523 3161633 -139109811 + CT-rich Low_complexity Low_complexity 4 114 0 1730 298 132 24 chr9 3163263 3164130 -139107314 + L2 LINE L2 1735 2694 -620 395 276 124 39 chr9 3164153 3164410 -139107034 + L2 LINE L2 2923 3201 -112 1080 279 19 52 chr9 3164433 3164856 -139106588 - MLT1I LTR MaLR 0 409 1 186 239 43 0 chr9 3164857 3164903 -139106541 + L2 LINE L2 3265 3312 -1 322 260 67 0 chr9 3165472 3165576 -139105868 - MIR SINE MIR -48 214 104 634 197 170 0 chr9 3165974 3166121 -139105323 + MER5A DNA MER1_type 9 180 -9 193 260 13 65 chr9 3166066 3166143 -139105301 - MER5A DNA MER1_type -114 75 3 * 201 147 0 0 chr9 3166740 3166774 -139104670 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 510 343 59 9 chr9 3167167 3167386 -139104058 - MIR SINE MIR -31 231 2 536 113 0 0 chr9 3167521 3167592 -139103852 + AluY SINE Alu 13 83 -227 374 319 125 7 chr9 3167592 3167736 -139103708 + MER45C DNA AcHobo 440 600 -353 1453 72 88 5 chr9 3167796 3167989 -139103455 + AluSc SINE Alu 85 293 -16 1160 163 59 0 chr9 3168226 3168447 -139102997 - L1MA4 LINE L1 -5 6295 6062 3070 90 10 15 chr9 3168476 3168887 -139102557 - L1PA10 LINE L1 -5 6163 5755 1687 292 102 30 chr9 3169084 3169660 -139101784 + MER45C DNA AcHobo 16 633 -320 270 254 0 0 chr9 3169655 3169710 -139101734 + MER45C DNA AcHobo 899 953 0 * 230 271 0 29 chr9 3170014 3170084 -139101360 - L2 LINE L2 0 3313 3246 546 284 82 16 chr9 3170252 3170509 -139100935 + MLT1L LTR MaLR 3 276 -339 669 228 64 0 chr9 3170529 3170700 -139100744 + MIR SINE MIR 17 198 -64 14342 230 48 7 chr9 3170703 3174587 -139096857 + L1PA16 LINE L1 1485 5525 -641 2645 136 18 0 chr9 3174587 3174974 -139096470 + L1PA16 LINE L1 5760 6157 -9 1461 178 73 0 chr9 3174997 3175272 -139096172 - AluJo SINE Alu -17 295 1 237 237 17 0 chr9 3175395 3175454 -139095990 + MIR SINE MIR 186 245 -17 611 235 72 21 chr9 3175570 3175789 -139095655 + MLT1L LTR MaLR 266 601 -14 310 106 43 0 chr9 3176053 3176100 -139095344 - MLT2C2 LTR ERVL 0 464 416 240 200 0 0 chr9 3176144 3176199 -139095245 + (TA)n Simple_repeat Simple_repeat 2 56 0 2024 169 118 25 chr9 3176199 3176638 -139094806 - MLT2B1 LTR ERVL -40 480 1 419 271 66 12 chr9 3177101 3177267 -139094177 + MER117 DNA MER1_type 13 187 -10 426 312 35 70 chr9 3177364 3177733 -139093711 - L2 LINE L2 0 3272 2917 44270 43 3 11 chr9 3178284 3182572 -139088872 - L1PA4 LINE L1 0 6155 1928 7929 36 1 0 chr9 3182572 3183591 -139087853 + L1PA3 LINE L1 5132 6152 -3 44270 43 3 11 chr9 3183591 3185504 -139085940 - L1PA4 LINE L1 -4227 1928 3 21 0 0 0 chr9 3185525 3185546 -139085898 + AT_rich Low_complexity Low_complexity 1 21 0 202 328 15 0 chr9 3186533 3186600 -139084844 + CT-rich Low_complexity Low_complexity 5 72 0 289 322 76 18 chr9 3186755 3186926 -139084518 + L2 LINE L2 2881 3061 -252 638 189 39 71 chr9 3186966 3187206 -139084238 - L1MC4 LINE L1 -18 6148 5979 1244 184 0 0 chr9 3187213 3187419 -139084025 - AluJb SINE Alu -15 297 92 2651 220 50 54 chr9 3187419 3188640 -139082804 - L1ME1 LINE L1 -199 5967 4724 1792 155 6 43 chr9 3188703 3189026 -139082418 - AluJb SINE Alu -1 311 1 397 262 28 19 chr9 3189080 3189187 -139082257 + L2 LINE L2 3205 3312 -1 270 362 28 28 chr9 3189822 3189999 -139081445 + L2 LINE L2 3099 3275 -38 211 203 188 16 chr9 3190517 3190581 -139080863 - MIR SINE MIR -10 252 178 391 236 112 45 chr9 3191106 3191284 -139080160 - MIR SINE MIR -6 256 67 373 280 61 23 chr9 3191944 3192076 -139079368 - MIR3 SINE MIR -22 186 50 387 279 111 68 chr9 3193015 3193591 -139077853 - L1ME4a LINE L1 -2 6119 5519 1370 216 17 11 chr9 3193593 3193880 -139077564 - AluJo SINE Alu -20 292 4 230 208 132 0 chr9 3194038 3194091 -139077353 + L1MC3 LINE L1 7481 7540 -245 244 261 34 11 chr9 3195481 3195569 -139075875 + Charlie7 DNA MER1_type 1 90 -2522 1207 256 62 9 chr9 3195591 3195931 -139075513 + MLT1C LTR MaLR 6 363 -104 22 56 0 0 chr9 3195957 3195993 -139075451 + AT_rich Low_complexity Low_complexity 1 36 0 321 283 9 9 chr9 3196778 3196884 -139074560 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 459 0 0 0 chr9 3196887 3196938 -139074506 + (TG)n Simple_repeat Simple_repeat 2 52 0 311 248 8 34 chr9 3196974 3197091 -139074353 + Charlie7 DNA MER1_type 2498 2611 -1 255 288 32 64 chr9 3197636 3197761 -139073683 - MIR SINE MIR -128 134 14 207 100 0 0 chr9 3198353 3198383 -139073061 + (T)n Simple_repeat Simple_repeat 1 30 0 223 286 0 0 chr9 3198383 3198439 -139073005 + L3 LINE CR1 256 311 -1266 244 273 36 95 chr9 3199216 3199469 -139071975 + L1MC4a LINE L1 5802 6039 -1769 1035 350 119 25 chr9 3199485 3200504 -139070940 + L3 LINE CR1 298 1411 -166 748 324 68 39 chr9 3200523 3201036 -139070408 + L1MC4a LINE L1 5377 5904 -1904 324 209 30 0 chr9 3201229 3201296 -139070148 + L3 LINE CR1 1399 1467 -110 2105 117 3 7 chr9 3202250 3202548 -139068896 + AluSg SINE Alu 1 297 -13 268 318 26 3 chr9 3202548 3202703 -139068741 - MIR SINE MIR -15 247 49 796 158 8 24 chr9 3203292 3203419 -139068025 - AluJo SINE Alu -105 207 83 22 35 0 0 chr9 3203422 3203451 -139067993 + AT_rich Low_complexity Low_complexity 1 29 0 295 273 39 47 chr9 3205199 3205327 -139066117 + MIR SINE MIR 78 204 -58 399 338 25 25 chr9 3205589 3205749 -139065695 + L2 LINE L2 3110 3269 -3 951 332 47 3 chr9 3205875 3206258 -139065186 + MLT1I LTR MaLR 3 402 -7 225 303 30 0 chr9 3206588 3206654 -139064790 + MIR SINE MIR 186 253 -9 479 261 49 35 chr9 3206729 3206871 -139064573 + MIR SINE MIR 8 151 -111 184 217 150 0 chr9 3207289 3207349 -139064095 - MIR SINE MIR 0 262 194 306 0 0 0 chr9 3207418 3207452 -139063992 + (TG)n Simple_repeat Simple_repeat 2 35 0 943 313 40 52 chr9 3207484 3207989 -139063455 + MLT1K LTR MaLR 77 575 -13 200 211 0 0 chr9 3208392 3208430 -139063014 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1865 141 0 0 chr9 3208797 3209090 -139062354 + AluJb SINE Alu 14 306 0 378 257 6 26 chr9 3209413 3209587 -139061857 - MER63A DNA MER1_type -2 208 1 655 75 0 0 chr9 3209598 3209678 -139061766 - MADE1 DNA Mariner 0 80 1 765 280 20 0 chr9 3209790 3209990 -139061454 + MIR SINE MIR 58 261 -1 218 272 25 49 chr9 3210033 3210114 -139061330 + MER5B DNA MER1_type 2 80 -98 3234 83 30 0 chr9 3210607 3211039 -139060405 - L1PA7 LINE L1 -1778 4368 3924 7817 82 6 2 chr9 3211039 3212813 -139058631 + L1PA7 LINE L1 4376 6154 0 295 116 0 0 chr9 3213353 3213396 -139058048 + MADE1 DNA Mariner 1 43 -37 218 236 0 14 chr9 3213413 3213485 -139057959 + GA-rich Low_complexity Low_complexity 3 73 0 274 321 102 15 chr9 3213528 3213665 -139057779 - MER5B DNA MER1_type -26 152 4 210 240 0 20 chr9 3214457 3214507 -139056937 + GA-rich Low_complexity Low_complexity 2 50 0 1817 183 37 0 chr9 3214878 3215200 -139056244 - L1MB1 LINE L1 -5 6163 5830 3402 190 25 40 chr9 3215261 3216009 -139055435 - L1PA14 LINE L1 -3 6158 5422 578 325 104 21 chr9 3216450 3216924 -139054520 + MLT1K LTR MaLR 52 584 -4 314 158 0 0 chr9 3218374 3218431 -139053013 + MER52A LTR ERV1 2 58 -1697 6543 180 130 8 chr9 3219173 3220615 -139050829 + MER52A LTR ERV1 46 1753 -2 1749 107 51 4 chr9 3220741 3220994 -139050450 - AluSq SINE Alu -48 265 1 268 393 51 9 chr9 3221940 3222276 -139049168 + HERV16 LTR ERVL 1023 1372 -3624 1081 337 80 18 chr9 3222341 3223020 -139048424 + HERV16 LTR ERVL 1512 2232 -3422 454 271 24 59 chr9 3223041 3223211 -139048233 - MIR SINE MIR -98 164 1 1541 240 272 25 chr9 3223965 3225055 -139046389 - L2 LINE L2 -10 3303 1927 23 0 0 0 chr9 3225323 3225346 -139046098 + AT_rich Low_complexity Low_complexity 1 23 0 908 274 42 33 chr9 3225359 3225695 -139045749 + L1ME LINE L1 5384 5722 -399 180 0 0 0 chr9 3225913 3225933 -139045511 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2227 267 192 39 chr9 3226050 3227501 -139043943 - L2 LINE L2 -1 3312 1649 857 139 46 13 chr9 3228565 3228716 -139042728 + MER20 DNA MER1_type 2 157 -62 531 281 108 25 chr9 3229717 3229920 -139041524 - MIR SINE MIR 0 262 43 843 249 182 44 chr9 3230218 3230675 -139040769 + HAL1 LINE L1 1230 1749 -758 1122 224 102 63 chr9 3230838 3231033 -139040411 + HAL1 LINE L1 1996 2182 -325 1347 197 66 16 chr9 3231033 3231353 -139040091 + MER46C DNA MER2_type 2 337 -1 1122 224 102 63 chr9 3231353 3231649 -139039795 + HAL1 LINE L1 2182 2506 -1 333 321 15 22 chr9 3232418 3232555 -139038889 + MIR SINE MIR 17 152 -110 933 135 47 57 chr9 3232574 3232766 -139038678 - MER20 DNA MER1_type -7 212 23 358 299 43 37 chr9 3232999 3233163 -139038281 - MIR3 SINE MIR -9 199 35 203 319 14 0 chr9 3233845 3233914 -139037530 + (TATG)n Simple_repeat Simple_repeat 2 71 0 910 189 0 12 chr9 3234020 3234184 -139037260 - AluJb SINE Alu -9 303 142 23 0 0 0 chr9 3234312 3234335 -139037109 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 3235498 3235535 -139035909 + AT_rich Low_complexity Low_complexity 1 37 0 1865 147 17 10 chr9 3235540 3235833 -139035611 + AluSx SINE Alu 1 295 -17 289 294 85 7 chr9 3236237 3236390 -139035054 - L1ME LINE L1 -304 5817 5653 266 271 0 0 chr9 3236394 3236464 -139034980 - L1ME LINE L1 -499 5622 5553 451 373 12 12 chr9 3236912 3237081 -139034363 + MIR3 SINE MIR 31 199 -9 419 250 61 14 chr9 3237133 3237281 -139034163 - MER103 DNA DNA -1 165 11 277 211 0 79 chr9 3237892 3237968 -139033476 - MER4-int LTR ERV1 -5431 1167 1098 471 311 24 6 chr9 3238197 3238361 -139033083 + MIR SINE MIR 23 189 -73 256 242 32 0 chr9 3238694 3238789 -139032655 + L1ME LINE L1 5708 5805 -316 811 132 0 41 chr9 3238797 3238918 -139032526 - FLAM_C SINE Alu -16 127 12 1963 254 175 37 chr9 3239422 3240518 -139030926 + HAL1b LINE L1 102 1348 0 679 289 55 42 chr9 3241249 3241629 -139029815 + HAL1 LINE L1 1283 1667 -840 2148 112 14 0 chr9 3241775 3242070 -139029374 - AluSx SINE Alu -13 299 1 231 163 0 0 chr9 3242265 3242308 -139029136 + HAL1b LINE L1 781 823 -525 269 357 31 0 chr9 3242741 3242870 -139028574 - MIR3 SINE MIR -13 195 63 261 0 0 0 chr9 3243199 3243228 -139028216 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 239 383 150 0 chr9 3243746 3243866 -139027578 + L2 LINE L2 3125 3262 -10 1003 210 110 0 chr9 3244219 3244509 -139026935 + LTR37A LTR ERV1 105 426 0 207 0 0 0 chr9 3244596 3244619 -139026825 + (TG)n Simple_repeat Simple_repeat 2 24 0 732 284 48 8 chr9 3244619 3244869 -139026575 + MIR SINE MIR 1 260 -2 928 281 53 81 chr9 3245036 3245544 -139025900 + MLT1J LTR MaLR 1 494 -17 1922 149 0 7 chr9 3245648 3245944 -139025500 - AluJo SINE Alu -12 300 7 244 325 36 0 chr9 3246424 3246507 -139024937 - MIR SINE MIR -65 197 112 228 232 10 81 chr9 3248210 3248309 -139023135 - MIR3 SINE MIR -11 197 106 228 360 126 18 chr9 3249201 3249312 -139022132 - L2 LINE L2 -23 3249 3127 671 289 64 40 chr9 3249317 3249482 -139021962 - MIR SINE MIR 0 262 88 2603 178 26 2 chr9 3249482 3249936 -139021508 + MLT1C LTR MaLR 2 466 -1 671 289 64 40 chr9 3249936 3250019 -139021425 - MIR SINE MIR -174 88 8 1373 165 9 0 chr9 3250486 3250710 -139020734 - L1PA15 LINE L1 -13 6152 5927 2582 130 16 3 chr9 3251072 3251450 -139019994 + MLT1B LTR MaLR 4 386 -4 230 300 0 0 chr9 3252024 3252084 -139019360 + (TG)n Simple_repeat Simple_repeat 2 61 0 245 378 90 27 chr9 3253106 3253294 -139018150 + MLT1K LTR MaLR 126 325 -263 478 241 24 60 chr9 3253550 3253716 -139017728 + LTR45 LTR ERV1 366 525 0 412 319 8 0 chr9 3254386 3254505 -139016939 + L2 LINE L2 3187 3306 -7 259 292 177 0 chr9 3254567 3254663 -139016781 - L2 LINE L2 0 3313 3201 663 215 115 68 chr9 3254684 3254875 -139016569 - MER20 DNA MER1_type -19 200 1 1410 291 76 10 chr9 3254877 3255571 -139015873 - L2 LINE L2 -119 3194 2458 423 292 146 0 chr9 3255575 3255712 -139015732 - MIR SINE MIR -104 158 2 1871 253 144 16 chr9 3255840 3256751 -139014693 + Charlie7 DNA MER1_type 436 1462 -1150 7676 185 83 22 chr9 3256755 3258064 -139013380 + L1M4c LINE L1 19 1246 -5138 1358 183 147 0 chr9 3258064 3258316 -139013128 - AluJb SINE Alu -13 289 1 7676 185 83 22 chr9 3258316 3258350 -139013094 + L1M4c LINE L1 1246 1276 -5108 2078 138 0 0 chr9 3258350 3258679 -139012765 + AluSx SINE Alu 4 312 0 7676 185 83 22 chr9 3258679 3259130 -139012314 + L1M4c LINE L1 1276 1924 -4460 2044 152 0 0 chr9 3259132 3259434 -139012010 - AluSx SINE Alu -10 302 1 572 185 8 0 chr9 3259515 3259634 -139011810 - L1MA9 LINE L1 -4 6308 6189 225 206 0 32 chr9 3259636 3259699 -139011745 + L1M4c LINE L1 2041 2101 -4283 * 1539 236 29 28 chr9 3259688 3260340 -139011104 + L1M4c LINE L1 2835 3487 -2895 501 134 0 0 chr9 3260359 3260441 -139011003 + L1MB3 LINE L1 1386 1467 -4917 317 146 0 0 chr9 3260443 3260491 -139010953 - Alu SINE Alu -15 287 240 2056 147 55 30 chr9 3260503 3261007 -139010437 - MLT2A2 LTR ERVL -22 532 2 3503 219 39 28 chr9 3261010 3262046 -139009398 + L1MB3 LINE L1 3481 4527 -1855 1934 153 88 5 chr9 3262045 3262430 -139009014 + L1MB3 LINE L1 5561 5977 -442 * 893 189 91 103 chr9 3262430 3262788 -139008656 + MLT1A1 LTR MaLR 1 428 -4 2301 161 33 5 chr9 3262788 3263218 -139008226 + L1MB3 LINE L1 5969 6410 -9 2112 234 90 17 chr9 3263229 3263997 -139007447 + Charlie7 DNA MER1_type 1462 2285 -327 294 253 49 31 chr9 3264201 3264220 -139007224 - L1MA10 LINE L1 0 6334 6316 2212 202 102 40 chr9 3264220 3264894 -139006550 - L1ME2 LINE L1 -11 6153 5438 21 0 0 0 chr9 3265138 3265159 -139006285 + AT_rich Low_complexity Low_complexity 1 21 0 2779 185 42 24 chr9 3266163 3266790 -139004654 + LTR9B LTR ERV1 7 644 0 722 206 101 42 chr9 3267204 3267599 -139003845 - MLT1A1 LTR MaLR 0 365 24 219 269 164 0 chr9 3267622 3267689 -139003755 + MIR SINE MIR 76 153 -55 642 198 161 0 chr9 3267940 3268102 -139003342 + MER5A DNA MER1_type 2 189 0 625 285 34 34 chr9 3268570 3268698 -139002746 - MIR SINE MIR -34 228 98 2252 186 83 2 chr9 3268698 3269165 -139002279 + MLT1D LTR MaLR 1 505 0 625 285 34 34 chr9 3269165 3269243 -139002201 - MIR SINE MIR -163 99 22 919 298 75 11 chr9 3270767 3271139 -139000305 + LTR16A LTR ERVL 55 450 0 871 190 34 34 chr9 3271326 3271450 -138999994 + MER3 DNA MER1_type 5 131 -78 1790 177 23 7 chr9 3271450 3271619 -138999825 - AluSx SINE Alu -2 310 132 1689 139 4 4 chr9 3271619 3271864 -138999580 - AluSx SINE Alu -15 297 53 1790 177 23 7 chr9 3271864 3271999 -138999445 - AluSx SINE Alu -180 132 1 871 190 34 34 chr9 3271999 3272079 -138999365 + MER3 DNA MER1_type 130 209 0 809 111 0 0 chr9 3273630 3273738 -138997706 + AluSg/x SINE Alu 175 282 -30 345 216 0 0 chr9 3273946 3274020 -138997424 + L1MC4 LINE L1 7785 7858 -184 427 324 0 16 chr9 3274081 3274263 -138997181 + (TA)n Simple_repeat Simple_repeat 1 179 0 235 247 0 0 chr9 3274317 3274390 -138997054 + L1MC4 LINE L1 7925 7997 -45 424 211 0 21 chr9 3274390 3274485 -138996959 - FAM SINE Alu -5 180 88 1228 278 75 20 chr9 3275031 3275745 -138995699 + L1ME3A LINE L1 5183 5934 -236 21 0 0 0 chr9 3276816 3276837 -138994607 + AT_rich Low_complexity Low_complexity 1 21 0 2090 148 33 25 chr9 3276912 3277271 -138994173 - THE1B LTR MaLR -2 362 1 2402 66 0 38 chr9 3277383 3277700 -138993744 + AluY SINE Alu 1 305 -6 380 312 102 16 chr9 3277942 3278128 -138993316 + MIR SINE MIR 61 262 0 242 389 18 42 chr9 3278667 3278834 -138992610 - MIR SINE MIR -79 183 21 225 0 0 0 chr9 3279012 3279037 -138992407 + (TG)n Simple_repeat Simple_repeat 1 25 0 328 268 120 11 chr9 3280524 3280671 -138990773 - MIR SINE MIR -33 175 19 546 239 103 0 chr9 3281133 3281288 -138990156 + MLT1J2 LTR MaLR 280 450 0 300 339 112 52 chr9 3281306 3281592 -138989852 + L2 LINE L2 2967 3269 -3 263 247 108 32 chr9 3281957 3282050 -138989394 + L2 LINE L2 2874 2973 -341 1160 292 78 19 chr9 3282108 3282551 -138988893 + LTR33 LTR ERVL 1 477 -44 2744 106 39 14 chr9 3282551 3282929 -138988515 + MLT2A1 LTR ERVL 1 393 -51 308 102 0 17 chr9 3282929 3282988 -138988456 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2744 106 39 14 chr9 3282988 3283042 -138988402 + MLT2A1 LTR ERVL 393 444 0 1160 292 78 19 chr9 3283042 3283085 -138988359 + LTR33 LTR ERVL 477 516 -5 2509 0 0 0 chr9 3283200 3283468 -138987976 - AluYa5 SINE Alu -6 305 38 323 351 46 23 chr9 3283682 3283813 -138987631 + L2 LINE L2 3134 3267 -5 1821 163 15 18 chr9 3284463 3284800 -138986644 + MER2 DNA MER2_type 1 336 -9 277 303 125 20 chr9 3284824 3284976 -138986468 - MIR SINE MIR -5 257 90 3305 45 0 0 chr9 3285029 3285430 -138986014 - L1PA4 LINE L1 -3 6152 5752 225 262 131 0 chr9 3286405 3286466 -138984978 - L2 LINE L2 -19 3294 3226 520 260 172 21 chr9 3287041 3287326 -138984118 + MLT1L LTR MaLR 38 365 -250 272 383 104 0 chr9 3287460 3287661 -138983783 - L2 LINE L2 -663 2651 2430 252 59 0 0 chr9 3287776 3287810 -138983634 + (CTG)n Simple_repeat Simple_repeat 2 35 0 295 353 24 50 chr9 3287995 3288335 -138983109 + LTR16C LTR ERVL 159 489 -2 967 194 122 56 chr9 3288569 3288889 -138982555 - MER2 DNA MER2_type 0 344 4 1066 261 12 4 chr9 3289339 3289674 -138981770 + MLT1I LTR MaLR 13 388 -21 1868 199 39 18 chr9 3290345 3290787 -138980657 + MLT1C LTR MaLR 11 461 -6 27 0 0 0 chr9 3290815 3290842 -138980602 + AT_rich Low_complexity Low_complexity 1 27 0 324 333 33 13 chr9 3290972 3291125 -138980319 + MIR SINE MIR 23 178 -84 396 151 0 0 chr9 3291133 3291206 -138980238 + LTR67 LTR ERVL 2 74 -483 495 299 139 43 chr9 3291261 3291635 -138979809 + LTR67 LTR ERVL 148 557 0 314 268 6 159 chr9 3292610 3292841 -138978603 - MIR SINE MIR -3 205 9 790 328 16 4 chr9 3292967 3293214 -138978230 + MIR SINE MIR 13 262 0 367 228 0 13 chr9 3294061 3294140 -138977304 - MIR3 SINE MIR -6 202 125 522 46 0 0 chr9 3294772 3294837 -138976607 + (TC)n Simple_repeat Simple_repeat 1 65 0 264 256 0 0 chr9 3294847 3294925 -138976519 + L1ME LINE L1 58 135 -5935 2772 94 5 0 chr9 3294933 3295306 -138976138 - THE1C LTR MaLR 0 375 1 253 338 0 0 chr9 3295508 3295579 -138975865 + C-rich Low_complexity Low_complexity 1 71 0 927 251 7 10 chr9 3295916 3296386 -138975058 + L1ME LINE L1 364 940 -5143 879 287 75 41 chr9 3296591 3297083 -138974361 - MLT1H LTR MaLR -40 509 1 282 307 0 13 chr9 3297156 3297231 -138974213 - MIR SINE MIR -85 123 50 2464 182 22 55 chr9 3297543 3298121 -138973323 - L1MB5 LINE L1 -10 6164 5606 234 388 10 0 chr9 3298404 3298507 -138972937 - MIR SINE MIR -67 141 38 813 159 28 14 chr9 3298626 3298771 -138972673 + FRAM SINE Alu 19 165 -11 614 251 94 30 chr9 3298993 3299196 -138972248 - MIR SINE MIR -2 260 45 327 157 0 0 chr9 3299189 3299240 -138972204 - MER5A DNA MER1_type -138 51 1 * 216 250 29 0 chr9 3299808 3299876 -138971568 + (TA)n Simple_repeat Simple_repeat 2 71 0 414 305 11 29 chr9 3300573 3300747 -138970697 + MER5B DNA MER1_type 2 172 -6 1403 202 112 30 chr9 3300871 3301157 -138970287 - MSTD LTR MaLR 0 396 72 2141 131 3 7 chr9 3301157 3301462 -138969982 - AluSq SINE Alu -9 304 1 1403 202 112 30 chr9 3301462 3301541 -138969903 - MSTD LTR MaLR -324 72 1 316 298 106 13 chr9 3302244 3302395 -138969049 - L1ME4a LINE L1 -202 5919 5755 239 294 228 0 chr9 3302399 3302491 -138968953 + MER5A DNA MER1_type 69 181 -8 2277 123 0 3 chr9 3302647 3302955 -138968489 - AluSx SINE Alu -5 307 1 261 222 193 19 chr9 3303002 3303209 -138968235 - L1ME4a LINE L1 -36 6085 5843 202 373 27 0 chr9 3303244 3303319 -138968125 - L3 LINE CR1 -1043 534 458 353 404 13 30 chr9 3303390 3303620 -138967824 - L3 LINE CR1 -1309 268 43 613 317 69 29 chr9 3303644 3303991 -138967453 - MARNA DNA Mariner -201 385 25 1462 219 38 27 chr9 3303999 3304365 -138967079 - MLT1A2 LTR MaLR -4 370 1 216 0 0 0 chr9 3304556 3304580 -138966864 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 3304672 3304695 -138966749 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 3304907 3304931 -138966513 + (T)n Simple_repeat Simple_repeat 1 24 0 1924 68 0 16 chr9 3306078 3306326 -138965118 - AluY SINE Alu -5 306 63 259 331 58 32 chr9 3306461 3306615 -138964829 + L2 LINE L2 3149 3306 -7 549 203 25 20 chr9 3306645 3306893 -138964551 + CT-rich Low_complexity Low_complexity 1 249 0 573 315 91 4 chr9 3308460 3308701 -138962743 - MLT1K LTR MaLR -172 416 155 434 292 8 8 chr9 3309271 3309401 -138962043 - MER94 DNA DNA -3 131 2 23 68 0 0 chr9 3309717 3309761 -138961683 + AT_rich Low_complexity Low_complexity 1 44 0 413 270 50 87 chr9 3310918 3311159 -138960285 + MER102b DNA MER1_type 103 334 -7 294 125 0 0 chr9 3312392 3312440 -138959004 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 182 150 25 0 chr9 3313446 3313486 -138957958 + (CA)n Simple_repeat Simple_repeat 2 42 0 203 292 21 31 chr9 3313598 3313694 -138957750 + (CATA)n Simple_repeat Simple_repeat 4 98 0 217 218 109 0 chr9 3314000 3314055 -138957389 - L2 LINE L2 -15 3257 3197 224 30 30 0 chr9 3314111 3314144 -138957300 + (GA)n Simple_repeat Simple_repeat 1 34 0 188 304 0 36 chr9 3314641 3314697 -138956747 + L2 LINE L2 3148 3201 -71 1779 156 3 33 chr9 3314783 3315084 -138956360 - AluJb SINE Alu -20 292 1 1886 176 76 23 chr9 3315113 3315644 -138955800 - MLT2A2 LTR ERVL 0 554 1 202 233 0 0 chr9 3315649 3315692 -138955752 + MIR SINE MIR 196 238 -24 237 65 0 0 chr9 3315733 3315764 -138955680 + (TCC)n Simple_repeat Simple_repeat 3 33 0 321 343 56 0 chr9 3315838 3315946 -138955498 + MER91C DNA MER1_type 1 114 -26 868 107 0 0 chr9 3317410 3317532 -138953912 - FRAM SINE Alu -1 175 54 351 320 109 6 chr9 3317540 3317715 -138953729 - MIR SINE MIR -62 200 8 1769 184 27 15 chr9 3317730 3318067 -138953377 + MER58B DNA MER1_type 1 341 0 298 378 6 47 chr9 3318945 3319117 -138952327 + MIR3 SINE MIR 1 145 -63 594 251 118 102 chr9 3319171 3319673 -138951771 - MLT1J LTR MaLR 0 511 2 1056 224 29 22 chr9 3319982 3320295 -138951149 + MER33 DNA MER1_type 1 315 -9 219 311 68 0 chr9 3320296 3320370 -138951074 + L2 LINE L2 3192 3270 -43 434 365 36 12 chr9 3320541 3320793 -138950651 + MIR SINE MIR 5 262 0 984 273 90 19 chr9 3321126 3321504 -138949940 - MLT1I LTR MaLR -3 406 2 456 266 87 100 chr9 3321689 3322219 -138949225 + L1ME4a LINE L1 5485 6007 -114 181 240 40 0 chr9 3322384 3322434 -138949010 + L2 LINE L2 3261 3312 -1 512 176 84 59 chr9 3322981 3323100 -138948344 + MER91B DNA MER1_type 1 122 -68 310 245 20 69 chr9 3323124 3323226 -138948218 + MER91B DNA MER1_type 93 189 -1 216 272 0 99 chr9 3323708 3323789 -138947655 + L2 LINE L2 3239 3311 -2 1060 168 10 15 chr9 3323819 3324021 -138947423 + MER41B LTR ERV1 349 549 -86 357 263 36 15 chr9 3324104 3324241 -138947203 - L1MC/D LINE L1 -2043 5765 5626 414 100 0 0 chr9 3324249 3324309 -138947135 + (TA)n Simple_repeat Simple_repeat 2 61 0 23 33 0 0 chr9 3324309 3324339 -138947105 + AT_rich Low_complexity Low_complexity 1 30 0 1909 139 4 4 chr9 3324342 3324622 -138946822 + AluSx SINE Alu 1 280 -32 336 111 0 0 chr9 3324622 3324685 -138946759 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 21 36 0 0 chr9 3324685 3324713 -138946731 + AT_rich Low_complexity Low_complexity 1 28 0 376 106 106 0 chr9 3324755 3324916 -138946528 + (TA)n Simple_repeat Simple_repeat 1 178 0 29 60 0 0 chr9 3324916 3324966 -138946478 + AT_rich Low_complexity Low_complexity 1 50 0 368 96 117 0 chr9 3324968 3325525 -138945919 + (TA)n Simple_repeat Simple_repeat 1 622 0 734 202 12 40 chr9 3325526 3325699 -138945745 - AluJo SINE Alu -144 168 1 294 151 0 0 chr9 3326264 3326317 -138945127 - L1MC5 LINE L1 -185 7776 7724 2019 244 61 23 chr9 3326599 3327338 -138944106 + L1M4 LINE L1 2505 3271 -2875 2028 221 94 52 chr9 3327368 3328142 -138943302 + L1M4 LINE L1 3565 4371 -1775 * 2326 234 41 53 chr9 3328121 3328952 -138942492 + L1MC4 LINE L1 7215 8035 -7 389 220 28 28 chr9 3329185 3329294 -138942150 + MIR SINE MIR 84 192 -70 919 303 149 9 chr9 3329345 3329880 -138941564 + L2 LINE L2 2713 3313 0 27 49 0 0 chr9 3329962 3330003 -138941441 + AT_rich Low_complexity Low_complexity 1 41 0 1956 134 4 0 chr9 3330010 3330285 -138941159 + AluSx SINE Alu 1 276 -36 23 0 0 0 chr9 3330340 3330363 -138941081 + AT_rich Low_complexity Low_complexity 1 23 0 1678 253 31 13 chr9 3331721 3332171 -138939273 + LTR40c LTR ERVL 1 458 -7 625 338 30 72 chr9 3332644 3333380 -138938064 + L1ME2 LINE L1 110 814 -5582 * 1867 264 49 3 chr9 3333366 3334105 -138937339 + L1ME2 LINE L1 2888 3660 -2555 548 284 34 0 chr9 3334140 3334344 -138937100 + L1ME2 LINE L1 3959 4169 -2046 1409 239 164 13 chr9 3334373 3335072 -138936372 + L1ME2 LINE L1 4605 5409 -806 2280 200 91 35 chr9 3335074 3335704 -138935740 + L1ME2 LINE L1 5444 6108 -125 277 403 8 0 chr9 3336016 3336145 -138935299 + MER89-int LTR ERV1 6334 6463 -338 10352 25 19 2 chr9 3336479 3338466 -138932978 + L1PA4 LINE L1 4170 6155 0 207 0 0 0 chr9 3338818 3338841 -138932603 + (A)n Simple_repeat Simple_repeat 1 23 0 317 181 97 42 chr9 3339248 3339320 -138932124 - MIR SINE MIR -142 120 45 1833 199 50 13 chr9 3339321 3339703 -138931741 - MER57A LTR ERV1 0 403 8 218 260 87 39 chr9 3339897 3340001 -138931443 + MIR SINE MIR 98 206 -56 2374 95 0 7 chr9 3340066 3340371 -138931073 - AluSp SINE Alu -10 303 1 192 182 250 0 chr9 3341028 3341072 -138930372 + L2 LINE L2 3217 3271 -1 25 51 0 0 chr9 3341361 3341400 -138930044 + AT_rich Low_complexity Low_complexity 1 39 0 1573 166 76 3 chr9 3341531 3341821 -138929623 + AluJb SINE Alu 1 311 -1 23 86 0 0 chr9 3341886 3341944 -138929500 + AT_rich Low_complexity Low_complexity 1 58 0 230 310 99 0 chr9 3341944 3342086 -138929358 + L1ME4a LINE L1 5482 5637 -484 2161 106 6 13 chr9 3342310 3342622 -138928822 + AluSx SINE Alu 1 310 -2 1788 68 8 0 chr9 3342638 3342875 -138928569 + L1PA7 LINE L1 5916 6154 0 393 236 55 0 chr9 3342884 3343011 -138928433 + L1ME4a LINE L1 5988 6121 0 1277 165 11 56 chr9 3343180 3343446 -138927998 - AluJb SINE Alu -58 254 1 1565 239 45 19 chr9 3345247 3345709 -138925735 + MLT1E2 LTR MaLR 156 626 0 1536 266 55 82 chr9 3345721 3346713 -138924731 + HAL1 LINE L1 739 1704 -803 583 283 97 39 chr9 3346910 3347221 -138924223 + HAL1 LINE L1 2168 2496 -11 631 298 50 17 chr9 3347237 3347475 -138923969 - MIR SINE MIR 0 262 17 1557 192 76 21 chr9 3347888 3348269 -138923175 + LTR52 LTR ERVL 18 419 -2 260 257 76 29 chr9 3348708 3348813 -138922631 - MIR SINE MIR -94 168 59 344 259 108 76 chr9 3349159 3349344 -138922100 - MIR3 SINE MIR -10 198 8 4841 197 23 34 chr9 3349511 3350790 -138920654 - L1MD2 LINE L1 -24 6335 5074 28 0 0 0 chr9 3351698 3351726 -138919718 + AT_rich Low_complexity Low_complexity 1 28 0 424 109 0 0 chr9 3351726 3351781 -138919663 + LOR1-int LTR ERV1 3813 3867 -4253 1308 134 0 0 chr9 3351808 3352017 -138919427 - L1MA2 LINE L1 -4 6300 6092 325 347 172 24 chr9 3352956 3353247 -138918197 - L2 LINE L2 -7 3265 2932 276 287 43 17 chr9 3353479 3353594 -138917850 - MIR SINE MIR -43 219 102 210 37 0 0 chr9 3353678 3353705 -138917739 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 337 340 51 9 chr9 3354161 3354376 -138917068 + L1P LINE L1 3509 3732 -2414 201 412 0 8 chr9 3354379 3354498 -138916946 + MIR SINE MIR 41 158 -104 779 216 59 54 chr9 3354560 3354727 -138916717 - MIR SINE MIR -23 239 69 1818 189 55 3 chr9 3354727 3355070 -138916374 + MLT1A1 LTR MaLR 1 361 -4 779 216 59 54 chr9 3355070 3355124 -138916320 - MIR SINE MIR -193 69 17 326 298 127 72 chr9 3355151 3355464 -138915980 + L1ME LINE L1 3862 4156 -1990 2136 174 61 2 chr9 3355464 3355872 -138915572 - MSTB1 LTR MaLR 0 432 1 326 298 127 72 chr9 3355872 3356173 -138915271 + L1ME LINE L1 4156 4510 -1636 21 36 0 0 chr9 3356496 3356524 -138914920 + AT_rich Low_complexity Low_complexity 1 28 0 574 279 60 60 chr9 3356538 3356853 -138914591 + MLT1J LTR MaLR 197 511 0 5092 73 16 0 chr9 3357226 3357913 -138913531 - L1PA10 LINE L1 -186 5982 5285 490 304 68 34 chr9 3357931 3358257 -138913187 + L1ME LINE L1 5484 5820 -301 3278 146 8 42 chr9 3358738 3359354 -138912090 + L1MA10 LINE L1 5740 6334 0 208 311 39 0 chr9 3360058 3360161 -138911283 + L2 LINE L2 2549 2655 -659 303 339 99 9 chr9 3360219 3360440 -138911004 + MIR SINE MIR 6 246 -16 246 207 37 37 chr9 3360524 3360606 -138910838 - MER103 DNA DNA -82 84 3 1788 188 28 6 chr9 3361226 3361583 -138909861 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr9 3361594 3361618 -138909826 + AT_rich Low_complexity Low_complexity 1 24 0 548 326 82 10 chr9 3362228 3362424 -138909020 - MIR SINE MIR -33 229 20 186 327 140 47 chr9 3362497 3362604 -138908840 - L2 LINE L2 -17 3255 3139 1258 113 21 0 chr9 3363282 3363476 -138907968 - L1PB3 LINE L1 0 6154 5957 2869 9 0 0 chr9 3363860 3364175 -138907269 + AluYb8 SINE Alu 1 315 -3 426 253 7 20 chr9 3364187 3364333 -138907111 - L1MC4a LINE L1 -1913 5895 5752 433 280 19 32 chr9 3364406 3364684 -138906760 - L1MEd LINE L1 -4862 1257 1069 455 297 57 29 chr9 3364779 3365025 -138906419 + L1MEd LINE L1 971 1223 -4896 2201 114 0 7 chr9 3365353 3365659 -138905785 - AluSx SINE Alu -8 304 1 397 333 56 12 chr9 3365689 3365851 -138905593 - MIR3 SINE MIR -4 204 36 414 183 65 11 chr9 3366468 3366561 -138904883 + MER5A DNA MER1_type 9 106 -83 796 327 28 6 chr9 3367900 3368261 -138903183 + L1ME LINE L1 5452 5820 -301 1480 148 60 27 chr9 3369064 3369396 -138902048 - L1MA8 LINE L1 0 6291 5949 511 118 0 24 chr9 3370390 3370475 -138900969 - AluSc SINE Alu -226 83 1 3281 164 11 9 chr9 3370476 3371000 -138900444 + HUERS-P3 LTR ERV1 6198 6722 -2197 13005 119 27 45 chr9 3371000 3372169 -138899275 + HUERS-P3 LTR ERV1 6863 8051 -868 209 271 0 68 chr9 3372169 3372228 -138899216 + MER5A DNA MER1_type 1 55 -134 13005 119 27 45 chr9 3372228 3372245 -138899199 + HUERS-P3 LTR ERV1 8051 8067 -852 2225 114 0 7 chr9 3372245 3372553 -138898891 - AluSg SINE Alu -4 306 1 13005 119 27 45 chr9 3372553 3373401 -138898043 + HUERS-P3 LTR ERV1 8067 8919 0 2580 186 19 68 chr9 3373401 3374045 -138897399 + LTR9 LTR ERV1 1 612 0 1835 214 53 22 chr9 3374045 3374862 -138896582 - L1MC4a LINE L1 -477 5707 4917 252 0 0 0 chr9 3374862 3374890 -138896554 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1835 214 53 22 chr9 3374890 3375550 -138895894 - L1MC4a LINE L1 -1267 4917 4020 198 182 0 23 chr9 3375561 3375605 -138895839 - L2 LINE L2 -637 2677 2635 2029 125 3 28 chr9 3376150 3376471 -138894973 - AluSq SINE Alu 0 313 1 335 307 92 33 chr9 3376653 3376806 -138894638 + L2 LINE L2 2988 3149 -164 22 0 0 0 chr9 3376992 3377014 -138894430 + AT_rich Low_complexity Low_complexity 1 22 0 6203 132 52 9 chr9 3377518 3378599 -138892845 + L1MC1 LINE L1 5188 6317 -16 2542 75 80 3 chr9 3378627 3379002 -138892442 - L1PA13 LINE L1 -5 6158 5755 2599 89 3 3 chr9 3379003 3379361 -138892083 - L1PA12 LINE L1 -329 5839 5482 2388 4 0 0 chr9 3381329 3381584 -138889860 + AluYa5 SINE Alu 39 293 -18 204 381 16 8 chr9 3382006 3382132 -138889312 + L2 LINE L2 2629 2755 -559 526 274 91 43 chr9 3382211 3382407 -138889037 + MIR SINE MIR 20 225 -37 209 194 0 0 chr9 3382877 3382913 -138888531 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 186 133 0 0 chr9 3383634 3383664 -138887780 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1099 256 62 6 chr9 3384089 3384451 -138886993 - L1ME LINE L1 -552 5618 5237 826 333 89 24 chr9 3384563 3384935 -138886509 + LTR16C LTR ERVL 90 485 -6 242 270 79 0 chr9 3385782 3385871 -138885573 + L2 LINE L2 3218 3313 0 1858 155 0 7 chr9 3386012 3386309 -138885135 - AluJb SINE Alu -17 295 1 276 333 0 0 chr9 3386506 3386593 -138884851 - L2 LINE L2 -4 3268 3182 257 303 40 30 chr9 3386737 3386836 -138884608 - L2 LINE L2 -11 3302 3203 501 248 272 5 chr9 3386920 3387122 -138884322 + MIR SINE MIR 7 262 0 1535 271 126 46 chr9 3387726 3389649 -138881795 + L1ME2 LINE L1 187 1954 -4126 297 51 0 0 chr9 3389649 3389688 -138881756 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 684 67 0 0 chr9 3389687 3389777 -138881667 + (TA)n Simple_repeat Simple_repeat 2 91 0 1535 271 126 46 chr9 3389688 3390268 -138881176 + L1ME2 LINE L1 1954 2790 -3290 1784 242 55 32 chr9 3390279 3390931 -138880513 + L1ME2 LINE L1 3317 3983 -2097 426 215 56 21 chr9 3390926 3391070 -138880374 + L1ME2 LINE L1 5124 5272 -808 * 2223 98 0 0 chr9 3391117 3391403 -138880041 + AluSp SINE Alu 4 289 -24 21 0 0 0 chr9 3391405 3391426 -138880018 + AT_rich Low_complexity Low_complexity 1 21 0 2127 91 30 14 chr9 3391448 3391745 -138879699 + AluSc SINE Alu 6 307 -2 1779 257 25 17 chr9 3391748 3392278 -138879166 + L1ME2 LINE L1 5302 5835 -263 460 35 0 0 chr9 3392270 3392327 -138879117 - L1P LINE L1 -5916 230 174 * 36900 54 1 2 chr9 3392331 3395717 -138875727 + L1PA5 LINE L1 674 4060 -2094 7618 39 1 1 chr9 3395717 3396614 -138874830 - MER11D LTR ERVK 0 897 1 36900 54 1 2 chr9 3396614 3398693 -138872751 + L1PA5 LINE L1 4060 6138 -16 583 268 86 8 chr9 3398741 3398984 -138872460 + L1ME2 LINE L1 5813 6074 -24 12453 204 41 13 chr9 3400419 3400459 -138870985 - L1MB1 LINE L1 -209 6195 6158 624 193 0 0 chr9 3400459 3400594 -138870850 - L1MB1 LINE L1 -1 6167 6033 12453 204 41 13 chr9 3400594 3404440 -138867004 - L1MB1 LINE L1 -246 6158 2190 197 284 116 0 chr9 3405091 3405180 -138866264 + MIR SINE MIR 52 148 -62 21 36 0 0 chr9 3406188 3406216 -138865228 + AT_rich Low_complexity Low_complexity 1 28 0 2710 61 3 0 chr9 3406259 3406603 -138864841 - L1PA7 LINE L1 0 6154 5810 1932 58 0 0 chr9 3406603 3406845 -138864599 + L1PA7 LINE L1 5572 5813 -341 336 306 27 20 chr9 3408144 3408291 -138863153 + L1ME4a LINE L1 5965 6112 -9 185 0 0 39 chr9 3408618 3408644 -138862800 + (TTA)n Simple_repeat Simple_repeat 3 27 0 517 324 117 28 chr9 3408990 3409450 -138861994 - L1M4 LINE L1 -1586 4560 4060 23 54 0 0 chr9 3410114 3410151 -138861293 + AT_rich Low_complexity Low_complexity 1 37 0 340 238 105 70 chr9 3411089 3411158 -138860286 + MIR SINE MIR 76 141 -121 339 25 0 0 chr9 3411158 3411198 -138860246 + (ATG)n Simple_repeat Simple_repeat 3 42 0 340 238 105 70 chr9 3411198 3411271 -138860173 + MIR SINE MIR 141 223 -39 284 315 15 54 chr9 3412183 3412313 -138859131 - MIR3 SINE MIR -11 197 73 503 130 0 0 chr9 3412448 3412525 -138858919 - MADE1 DNA Mariner -3 77 1 561 282 17 35 chr9 3413453 3413627 -138857817 - MER20B DNA MER1_type -609 174 4 621 293 25 20 chr9 3414445 3414643 -138856801 - MIR SINE MIR -56 206 8 219 262 33 16 chr9 3414775 3414836 -138856608 - MIR SINE MIR -115 147 86 29 0 0 0 chr9 3414917 3414946 -138856498 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 3415116 3415136 -138856308 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 345 140 0 0 chr9 3416286 3416343 -138855101 + (CA)n Simple_repeat Simple_repeat 2 58 0 716 239 177 5 chr9 3416377 3416586 -138854858 - MIR SINE MIR 0 262 18 337 300 134 89 chr9 3416583 3417052 -138854392 + L2 LINE L2 2770 3255 -17 * 336 281 22 11 chr9 3418306 3418395 -138853049 + MER91A DNA MER1_type 2 91 -105 2102 177 28 23 chr9 3419095 3420680 -138850764 + L1MC3 LINE L1 4731 7765 -20 1957 119 0 41 chr9 3420680 3421001 -138850443 - AluSx SINE Alu 0 309 1 2102 177 28 23 chr9 3421001 3421023 -138850421 + L1MC3 LINE L1 7765 7785 0 525 267 99 15 chr9 3421225 3421487 -138849957 + HAL1 LINE L1 1398 1681 -826 35 0 0 0 chr9 3421637 3421672 -138849772 + AT_rich Low_complexity Low_complexity 1 35 0 1325 178 114 11 chr9 3423280 3423561 -138847883 + AluSx SINE Alu 2 311 -1 1003 289 16 9 chr9 3425017 3425339 -138846105 + L1MCc LINE L1 130 453 -5970 388 246 48 60 chr9 3425821 3425988 -138845456 + L1MCc LINE L1 795 959 -5464 1060 279 73 26 chr9 3426052 3426540 -138844904 + L1MCc LINE L1 1339 1803 -5319 2172 86 58 0 chr9 3426540 3426831 -138844613 + AluSg SINE Alu 1 308 -2 1060 279 73 26 chr9 3426831 3427287 -138844157 + L1MCc LINE L1 1803 2518 -4604 28895 102 13 3 chr9 3427337 3432470 -138838974 - L1PA7 LINE L1 0 6469 1288 4747 17 0 0 chr9 3432474 3433016 -138838428 - L1PA2 LINE L1 0 6155 5614 4669 34 2 0 chr9 3433016 3433583 -138837861 + L1P LINE L1 4686 5253 -893 * 9008 98 32 5 chr9 3433576 3434840 -138836604 - L1PA7 LINE L1 -5161 1300 2 1819 169 0 19 chr9 3435022 3435330 -138836114 - AluJo SINE Alu -10 302 1 2893 236 64 26 chr9 3435374 3436244 -138835200 + L1MEc LINE L1 40 942 -5454 701 318 32 53 chr9 3436279 3436657 -138834787 - MLT1L LTR MaLR -123 492 123 2533 239 28 11 chr9 3436756 3437299 -138834145 + REP3 LTR ERV 11 562 0 644 264 70 0 chr9 3437426 3437627 -138833817 + MER58C DNA MER1_type 1 215 0 231 361 139 0 chr9 3437697 3437805 -138833639 - MIR SINE MIR -112 150 28 252 59 0 0 chr9 3437976 3438010 -138833434 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 211 245 75 0 chr9 3438240 3438293 -138833151 - L2 LINE L2 -4 3268 3212 320 268 145 41 chr9 3438429 3438698 -138832746 - MER102a DNA MER1_type 0 330 34 729 117 0 83 chr9 3438838 3438983 -138832461 - L1MD1 LINE L1 -14 6228 6096 213 227 0 0 chr9 3439121 3439165 -138832279 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 606 228 42 5 chr9 3439176 3439365 -138832079 - L1MD1 LINE L1 -1985 5823 5628 874 298 80 35 chr9 3439380 3440172 -138831272 - L1MD1 LINE L1 -748 5398 4686 183 80 0 0 chr9 3440172 3440197 -138831247 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 874 298 80 35 chr9 3440197 3440589 -138830855 - L1MD1 LINE L1 -1460 4686 4313 3577 126 24 0 chr9 3440601 3441179 -138830265 - L1MA5A LINE L1 -3 6294 5703 1522 196 37 0 chr9 3441179 3441470 -138829974 + L1PB4 LINE L1 5837 6143 -13 2967 149 18 9 chr9 3441486 3442041 -138829403 - L1MA5A LINE L1 -587 5710 5144 4076 129 25 71 chr9 3442041 3442863 -138828581 - LTR1 LTR ERV1 0 785 1 2967 149 18 9 chr9 3442863 3443238 -138828206 - L1MA5A LINE L1 -1153 5144 4774 327 297 25 0 chr9 3443391 3443509 -138827935 - L1MD1 LINE L1 -1987 4159 4039 1785 189 88 43 chr9 3443931 3444226 -138827218 - Charlie4a DNA MER1_type -1453 508 183 3827 14 0 0 chr9 3444226 3444665 -138826779 + L1PA2 LINE L1 5717 6155 0 1785 189 88 43 chr9 3444665 3444835 -138826609 - Charlie4a DNA MER1_type -1778 183 22 1769 163 3 3 chr9 3446054 3446379 -138825065 - AluSx SINE Alu 0 325 1 1068 202 79 128 chr9 3446775 3446843 -138824601 - MLT1D LTR MaLR -1 504 434 2354 104 0 0 chr9 3446843 3447150 -138824294 + AluSg SINE Alu 3 309 -1 1068 202 79 128 chr9 3447150 3447611 -138823833 - MLT1D LTR MaLR -71 434 1 2977 278 109 28 chr9 3448533 3450647 -138820797 - L1MC4a LINE L1 -758 5388 3850 311 88 0 18 chr9 3450647 3450704 -138820740 + (TA)n Simple_repeat Simple_repeat 1 56 0 2977 278 109 28 chr9 3450704 3451553 -138819891 - L1MC4a LINE L1 -2296 3850 3071 399 21 0 0 chr9 3451777 3451825 -138819619 + (CA)n Simple_repeat Simple_repeat 2 49 0 267 293 75 43 chr9 3451891 3452079 -138819365 - HAL1b LINE L1 -929 419 226 26 30 0 0 chr9 3452202 3452235 -138819209 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr9 3452719 3452749 -138818695 + (TTG)n Simple_repeat Simple_repeat 2 31 0 237 385 54 0 chr9 3455021 3455151 -138816293 + MIR3 SINE MIR 2 138 -70 194 276 163 0 chr9 3455413 3455511 -138815933 + MIR SINE MIR 8 121 -141 307 179 0 24 chr9 3455917 3456001 -138815443 + CT-rich Low_complexity Low_complexity 4 85 0 468 231 23 62 chr9 3456611 3456664 -138814780 + L2 LINE L2 3189 3242 -71 1378 250 82 52 chr9 3456664 3457188 -138814256 + MLT1F LTR MaLR 3 542 0 468 231 23 62 chr9 3457188 3457264 -138814180 + L2 LINE L2 3242 3313 0 23 0 0 0 chr9 3457827 3457850 -138813594 + AT_rich Low_complexity Low_complexity 1 23 0 243 266 78 101 chr9 3457866 3458084 -138813360 - L2 LINE L2 -174 3139 2927 345 24 0 0 chr9 3458162 3458204 -138813240 + (CA)n Simple_repeat Simple_repeat 1 42 0 224 228 0 0 chr9 3458372 3458429 -138813015 + T-rich Low_complexity Low_complexity 1 57 0 290 293 81 10 chr9 3458431 3458530 -138812914 - MIR SINE MIR -87 175 70 1123 176 27 5 chr9 3459486 3459708 -138811736 + L1MA9 LINE L1 6049 6275 -37 2128 99 3 11 chr9 3460023 3460334 -138811110 - AluSq SINE Alu 0 311 3 304 232 141 40 chr9 3460973 3461072 -138810372 + MER20B DNA MER1_type 70 178 -605 641 190 25 0 chr9 3461374 3461495 -138809949 - MLT2D LTR ERVL -274 140 17 882 220 70 0 chr9 3461522 3461722 -138809722 + MLT1H1 LTR MaLR 342 555 0 966 305 90 11 chr9 3461733 3462166 -138809278 + L2 LINE L2 2842 3308 -5 3258 151 36 31 chr9 3462817 3463372 -138808072 + MER74A LTR ERVL 1 558 0 304 281 12 0 chr9 3463496 3463578 -138807866 - L2 LINE L2 -4 3268 3186 1583 213 0 3 chr9 3463960 3464247 -138807197 + AluJo SINE Alu 1 286 -26 659 315 84 4 chr9 3464251 3464489 -138806955 - MIR SINE MIR 0 262 6 339 213 0 50 chr9 3465464 3465544 -138805900 - L2 LINE L2 -5 3308 3233 223 311 25 8 chr9 3466460 3466579 -138804865 + (CACG)n Simple_repeat Simple_repeat 1 121 0 425 193 211 18 chr9 3468282 3468396 -138803048 - MER82 DNA MER2_type -504 149 14 1140 244 136 40 chr9 3468923 3469373 -138802071 - MLT1D LTR MaLR 0 505 13 2245 109 0 10 chr9 3469669 3469981 -138801463 - AluY SINE Alu 0 311 3 249 146 0 0 chr9 3470048 3470096 -138801348 + (GA)n Simple_repeat Simple_repeat 1 48 0 509 254 204 33 chr9 3470127 3470402 -138801042 + Charlie2 DNA MER1_type 1 322 -2540 611 199 121 0 chr9 3470409 3470550 -138800894 + Charlie2 DNA MER1_type 1858 2015 -847 743 244 120 14 chr9 3470637 3471055 -138800389 + Charlie2 DNA MER1_type 2334 2795 -67 2244 116 6 30 chr9 3471082 3471443 -138800001 + MER50 LTR ERV1 1 352 -382 518 264 156 64 chr9 3471455 3471781 -138799663 - LTR18A LTR ERVL -1 356 1 1840 143 39 34 chr9 3471781 3472138 -138799306 + MER50 LTR ERV1 347 705 -29 749 233 25 6 chr9 3474094 3474253 -138797191 - MER5A DNA MER1_type -3 186 25 1450 172 31 151 chr9 3474383 3474808 -138796636 + MLT1A2 LTR MaLR 1 374 0 185 359 39 19 chr9 3475075 3475178 -138796266 + MIR SINE MIR 104 208 -54 321 301 141 47 chr9 3475185 3475441 -138796003 + L2 LINE L2 3032 3311 -2 2056 107 0 14 chr9 3475762 3476052 -138795392 + AluSc SINE Alu 1 286 -23 243 217 36 48 chr9 3476902 3476985 -138794459 + MIR SINE MIR 104 185 -77 240 231 19 0 chr9 3477719 3477771 -138793673 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 253 298 118 8 chr9 3477776 3478003 -138793441 + L1MC4a LINE L1 5389 5640 -522 505 195 190 36 chr9 3478508 3478703 -138792741 + L1MC4a LINE L1 5674 5898 -1910 386 171 0 85 chr9 3478883 3478965 -138792479 - MER5B DNA MER1_type 0 178 104 249 290 176 51 chr9 3479174 3479350 -138792094 - MIR SINE MIR -45 217 20 337 261 76 8 chr9 3480288 3480407 -138791037 - L1ME4a LINE L1 -53 6068 5942 2585 36 3 7 chr9 3480412 3480717 -138790727 + AluY SINE Alu 1 304 -7 181 292 77 15 chr9 3481087 3481152 -138790292 - L3 LINE CR1 -1297 280 212 756 278 106 16 chr9 3481479 3481799 -138789645 - L2 LINE L2 -7 3306 2958 1504 215 7 7 chr9 3482024 3482312 -138789132 + AluJo SINE Alu 3 290 -22 264 30 0 0 chr9 3482485 3482518 -138788926 + (TG)n Simple_repeat Simple_repeat 2 34 0 715 236 0 8 chr9 3482717 3482844 -138788600 + FLAM_A SINE Alu 3 128 -5 2264 134 85 15 chr9 3484550 3485104 -138786340 - MER39 LTR ERV1 0 707 32 398 284 113 0 chr9 3485150 3485291 -138786153 - MIR SINE MIR -48 214 58 286 214 14 14 chr9 3485602 3485672 -138785772 + MIR SINE MIR 129 198 -64 544 276 46 46 chr9 3486971 3487014 -138784430 - MIR SINE MIR -64 198 156 1541 171 100 10 chr9 3487014 3487324 -138784120 - MER44D DNA MER2_type 0 609 2 544 276 46 46 chr9 3487324 3487476 -138783968 - MIR SINE MIR -105 157 3 211 182 0 0 chr9 3487524 3487557 -138783887 + polypurine Low_complexity Low_complexity 4 36 0 242 262 56 19 chr9 3487926 3488033 -138783411 + L1ME LINE L1 5314 5424 -2384 1301 211 57 82 chr9 3488037 3488285 -138783159 - MLT1C LTR MaLR -5 462 230 378 0 0 0 chr9 3488285 3488327 -138783117 + (TG)n Simple_repeat Simple_repeat 2 43 0 1301 211 57 82 chr9 3488327 3488552 -138782892 - MLT1C LTR MaLR -237 230 1 2313 118 0 0 chr9 3488825 3489130 -138782314 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr9 3489320 3489341 -138782103 + AT_rich Low_complexity Low_complexity 1 21 0 1942 167 139 54 chr9 3489633 3489861 -138781583 + MER39 LTR ERV1 4 211 -496 2281 169 39 10 chr9 3489861 3490246 -138781198 + MSTD LTR MaLR 1 396 0 1942 167 139 54 chr9 3490246 3490633 -138780811 + MER39 LTR ERV1 211 707 0 829 288 99 20 chr9 3491799 3492153 -138779291 - L1ME3A LINE L1 -60 6110 5729 246 291 55 18 chr9 3492617 3492727 -138778717 + L1ME LINE L1 5532 5645 -476 243 374 61 8 chr9 3492821 3492952 -138778492 - L2 LINE L2 -1 3271 3134 1516 185 10 17 chr9 3493034 3493326 -138778118 - AluJo SINE Alu -18 294 5 368 40 20 0 chr9 3493329 3493379 -138778065 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 524 117 0 0 chr9 3493479 3493556 -138777888 - L1M4 LINE L1 -863 5283 5207 1527 276 29 40 chr9 3493556 3494074 -138777370 - LTR40a LTR ERVL 0 519 8 371 242 32 24 chr9 3494084 3494208 -138777236 - L1ME3A LINE L1 -940 5206 5082 2734 193 46 48 chr9 3494212 3494232 -138777212 - L1ME3A LINE L1 -1022 5124 5105 2341 97 3 0 chr9 3494232 3494531 -138776913 - AluSp SINE Alu -13 300 1 2734 193 46 48 chr9 3494531 3495247 -138776197 - L1ME3A LINE L1 -1041 5105 4389 317 194 216 37 chr9 3495249 3495383 -138776061 - L1ME3A LINE L1 -3851 2295 2138 2061 128 7 3 chr9 3495865 3496170 -138775274 - AluSx SINE Alu -6 306 1 3985 129 48 12 chr9 3497478 3497953 -138773491 + L1MA6 LINE L1 5633 6138 -162 2631 168 12 16 chr9 3497953 3498381 -138773063 + MSTB LTR MaLR 1 426 0 3985 129 48 12 chr9 3498381 3498550 -138772894 + L1MA6 LINE L1 6138 6300 0 346 220 119 90 chr9 3498635 3498812 -138772632 - Charlie8 DNA MER1_type -2164 253 72 2259 99 3 0 chr9 3498962 3499256 -138772188 + AluSx SINE Alu 1 295 -17 324 284 10 49 chr9 3499883 3499985 -138771459 - MIR SINE MIR -161 101 4 244 322 8 50 chr9 3500017 3500138 -138771306 - MIR SINE MIR -63 145 30 986 291 76 46 chr9 3500241 3501188 -138770256 + MERVL LTR ERVL 4156 5209 -555 272 241 76 0 chr9 3501451 3501530 -138769914 + LTR33 LTR ERVL 419 503 -18 2193 113 10 0 chr9 3502658 3502960 -138768484 - AluSg SINE Alu -4 306 2 333 0 0 0 chr9 3503100 3503137 -138768307 + (TA)n Simple_repeat Simple_repeat 2 38 0 448 195 98 32 chr9 3503159 3503282 -138768162 + L1ME1 LINE L1 6036 6166 0 27 0 0 0 chr9 3503855 3503882 -138767562 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr9 3504834 3504857 -138766587 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 3511233 3511259 -138760185 + AT_rich Low_complexity Low_complexity 1 26 0 480 273 101 38 chr9 3515242 3515451 -138755993 + MARNA DNA Mariner 11 232 -354 509 296 94 31 chr9 3515525 3515748 -138755696 + MARNA DNA Mariner 328 564 -22 316 122 0 0 chr9 3515760 3515809 -138755635 - MADE1 DNA Mariner -31 49 1 298 241 0 0 chr9 3516800 3516858 -138754586 - L2 LINE L2 0 3313 3256 1722 100 120 12 chr9 3517177 3517431 -138754013 + AluSg SINE Alu 1 283 -23 294 95 0 0 chr9 3517431 3517473 -138753971 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 468 321 92 22 chr9 3517725 3517996 -138753448 + L2 LINE L2 3024 3313 0 254 190 10 30 chr9 3518163 3518263 -138753181 + GA-rich Low_complexity Low_complexity 1 98 0 263 233 0 17 chr9 3519196 3519256 -138752188 + MIR SINE MIR 203 261 -1 811 238 23 0 chr9 3519573 3519745 -138751699 - MER58A DNA MER1_type -1 223 48 1762 152 11 11 chr9 3519746 3520057 -138751387 + AluJb SINE Alu 1 311 0 330 261 0 0 chr9 3520086 3520151 -138751293 - MER58A DNA MER1_type -42 65 1 1599 188 84 81 chr9 3520835 3521343 -138750101 - MLT1D LTR MaLR 0 549 1 358 321 38 47 chr9 3522982 3523194 -138748250 - MIR SINE MIR -6 256 47 234 143 0 24 chr9 3523229 3523271 -138748173 + MIR SINE MIR 34 74 -188 822 95 0 0 chr9 3523277 3523382 -138748062 + AluJb SINE Alu 197 301 -11 1875 75 8 38 chr9 3524139 3524405 -138747039 + AluSp SINE Alu 44 301 -12 1680 258 131 28 chr9 3525075 3525698 -138745746 + MER115 DNA AcHobo 5 4029 -2 379 342 114 5 chr9 3527492 3527685 -138743759 + MIR SINE MIR 32 245 -17 29 78 0 0 chr9 3528291 3528355 -138743089 + AT_rich Low_complexity Low_complexity 1 64 0 39 22 0 0 chr9 3528639 3528685 -138742759 + AT_rich Low_complexity Low_complexity 1 46 0 737 253 43 74 chr9 3529254 3529382 -138742062 + MIR SINE MIR 8 126 -136 2286 98 0 13 chr9 3529382 3529698 -138741746 - AluSx SINE Alu 0 312 1 737 253 43 74 chr9 3529698 3529826 -138741618 + MIR SINE MIR 126 256 -6 603 268 41 130 chr9 3529952 3530344 -138741100 + L2 LINE L2 2914 3270 -2 319 324 36 18 chr9 3530351 3530462 -138740982 - MIR SINE MIR -66 142 30 381 316 85 32 chr9 3530583 3530920 -138740524 - L2 LINE L2 -225 3047 2682 248 314 25 17 chr9 3530938 3531056 -138740388 - L2 LINE L2 -797 2517 2399 641 239 97 85 chr9 3532735 3532982 -138738462 + MIR SINE MIR 12 261 -1 23 68 0 0 chr9 3534277 3534321 -138737123 + AT_rich Low_complexity Low_complexity 1 44 0 225 65 0 0 chr9 3534422 3534453 -138736991 + (TG)n Simple_repeat Simple_repeat 2 32 0 188 353 77 47 chr9 3534718 3534888 -138736556 + MIR SINE MIR 32 206 -56 24 0 0 0 chr9 3535332 3535356 -138736088 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr9 3535701 3535733 -138735711 + AT_rich Low_complexity Low_complexity 1 32 0 644 265 127 38 chr9 3535740 3536229 -138735215 + L1ME4a LINE L1 5361 5894 -227 508 235 23 65 chr9 3536383 3536600 -138734844 + L1ME4a LINE L1 5676 5883 -238 1413 174 57 14 chr9 3536746 3537028 -138734416 - AluJo SINE Alu -18 294 1 24 0 0 0 chr9 3537069 3537093 -138734351 + AT_rich Low_complexity Low_complexity 1 24 0 2081 82 4 0 chr9 3537233 3537500 -138733944 - AluSp SINE Alu -4 309 42 917 309 91 9 chr9 3537613 3538133 -138733311 - L2 LINE L2 -3 3310 2738 1212 106 0 0 chr9 3539935 3540096 -138731348 - AluY SINE Alu -16 295 135 210 73 0 98 chr9 3541295 3541336 -138730108 + MER5B DNA MER1_type 25 61 -117 2296 74 0 13 chr9 3541365 3541663 -138729781 - AluY SINE Alu -17 294 1 222 304 20 29 chr9 3541681 3541783 -138729661 - MER5B DNA MER1_type -72 106 6 846 260 0 6 chr9 3541823 3541996 -138729448 - MER5A DNA MER1_type -16 173 2 213 336 136 9 chr9 3543467 3543577 -138727867 + MIR3 SINE MIR 31 154 -54 250 296 178 46 chr9 3543794 3543946 -138727498 + L2 LINE L2 2247 2418 -896 286 205 47 24 chr9 3544164 3544291 -138727153 + (TA)n Simple_repeat Simple_repeat 2 131 0 321 272 73 32 chr9 3544294 3544540 -138726904 - L1ME4a LINE L1 -161 5960 5705 201 171 0 0 chr9 3545835 3545870 -138725574 + (TA)n Simple_repeat Simple_repeat 2 36 0 256 191 43 0 chr9 3546231 3546325 -138725119 + (TA)n Simple_repeat Simple_repeat 2 99 0 4580 189 18 9 chr9 3546515 3547590 -138723854 - L1MB8 LINE L1 0 6178 5102 379 303 45 30 chr9 3547957 3548089 -138723355 - MIR SINE MIR -128 134 1 1204 282 80 16 chr9 3549082 3549568 -138721876 + LTR33 LTR ERVL 1 517 -4 26 30 0 0 chr9 3549673 3549706 -138721738 + AT_rich Low_complexity Low_complexity 1 33 0 412 289 0 0 chr9 3549914 3550018 -138721426 - MIR SINE MIR -11 251 148 256 196 0 0 chr9 3550432 3550483 -138720961 + MER3 DNA MER1_type 1 51 -158 * 803 237 41 0 chr9 3550480 3550674 -138720770 + MER3 DNA MER1_type 7 208 -1 22 35 0 0 chr9 3553333 3553362 -138718082 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 3553694 3553715 -138717729 + AT_rich Low_complexity Low_complexity 1 21 0 767 57 33 8 chr9 3555445 3555567 -138715877 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 584 171 13 26 chr9 3556812 3556964 -138714480 + CT-rich Low_complexity Low_complexity 3 152 0 2264 101 0 3 chr9 3558967 3559264 -138712180 + AluSx SINE Alu 5 300 -12 249 167 0 0 chr9 3560219 3560273 -138711171 + (TA)n Simple_repeat Simple_repeat 2 55 0 587 285 54 51 chr9 3560292 3560643 -138710801 - L1MC4a LINE L1 -157 5964 5610 210 150 0 0 chr9 3562035 3562075 -138709369 + (CA)n Simple_repeat Simple_repeat 1 40 0 30 59 0 0 chr9 3562289 3562340 -138709104 + AT_rich Low_complexity Low_complexity 1 51 0 275 246 85 0 chr9 3563713 3563831 -138707613 - L1ME4a LINE L1 -30 6091 5964 329 349 48 27 chr9 3566041 3566187 -138705257 + MER5B DNA MER1_type 1 149 -29 215 150 50 100 chr9 3566439 3566499 -138704945 - L2 LINE L2 -8 3305 3249 465 287 0 9 chr9 3567898 3568013 -138703431 - L2 LINE L2 0 3272 3159 392 252 29 10 chr9 3568720 3568823 -138702621 - MIR SINE MIR -56 206 102 504 244 78 0 chr9 3569319 3569434 -138702010 + MIR3 SINE MIR 81 204 -4 24 0 0 0 chr9 3571710 3571734 -138699710 + AT_rich Low_complexity Low_complexity 1 24 0 227 224 86 0 chr9 3572821 3572879 -138698565 + MIR SINE MIR 61 123 -85 356 125 16 0 chr9 3572971 3573035 -138698409 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr9 3574582 3574605 -138696839 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 3574670 3574698 -138696746 + AT_rich Low_complexity Low_complexity 1 28 0 263 200 20 0 chr9 3576204 3576254 -138695190 + MER34 LTR ERV1 1 51 -491 1491 175 69 102 chr9 3576265 3576464 -138694980 + MER39 LTR ERV1 232 436 -271 1972 107 0 24 chr9 3576464 3576818 -138694626 + AluSx SINE Alu 1 347 0 1491 175 69 102 chr9 3576818 3577109 -138694335 + MER39 LTR ERV1 436 707 0 1949 101 14 22 chr9 3577196 3577473 -138693971 + AluSc SINE Alu 35 309 0 222 91 0 0 chr9 3578124 3578157 -138693287 + (TG)n Simple_repeat Simple_repeat 2 34 0 304 341 30 22 chr9 3579785 3579920 -138691524 - L2 LINE L2 -19 3294 3159 24 32 0 0 chr9 3579986 3580017 -138691427 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr9 3581292 3581314 -138690130 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 3581550 3581579 -138689865 + AT_rich Low_complexity Low_complexity 1 29 0 207 139 0 0 chr9 3581919 3581955 -138689489 + (TA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chr9 3583452 3583499 -138687945 + AT_rich Low_complexity Low_complexity 1 47 0 665 195 0 9 chr9 3583855 3583968 -138687476 - L2 LINE L2 -1 3312 3201 21 36 0 0 chr9 3585833 3585861 -138685583 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr9 3586831 3586854 -138684590 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr9 3588353 3588388 -138683056 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 3589611 3589641 -138681803 + AT_rich Low_complexity Low_complexity 1 30 0 2156 106 43 37 chr9 3589874 3590224 -138681220 + THE1B LTR MaLR 11 362 -2 1632 29 0 10 chr9 3591943 3592147 -138679297 + L1PA4 LINE L1 5954 6155 0 2069 138 19 32 chr9 3592261 3592630 -138678814 + THE1B LTR MaLR 1 364 0 197 337 124 72 chr9 3592714 3592907 -138678537 - L2 LINE L2 -555 2759 2557 282 204 0 97 chr9 3595981 3596074 -138675370 - MIR SINE MIR -62 200 117 359 182 15 15 chr9 3596911 3596977 -138674467 + MER5A DNA MER1_type 3 68 -121 1948 119 7 4 chr9 3596986 3597263 -138674181 + AluSx SINE Alu 3 280 -32 667 251 44 35 chr9 3597381 3597584 -138673860 - MER112 DNA MER1_type 0 260 56 240 200 15 62 chr9 3597614 3597679 -138673765 - MER112 DNA MER1_type -175 85 24 630 85 0 30 chr9 3597974 3598075 -138673369 + L1PA5 LINE L1 10 398 -6063 * 38595 68 3 3 chr9 3598060 3603916 -138667528 + L1PA5 LINE L1 612 6469 0 28 0 0 0 chr9 3603916 3603944 -138667500 + AT_rich Low_complexity Low_complexity 1 28 0 658 217 90 6 chr9 3604551 3604717 -138666727 + MER5A DNA MER1_type 5 184 -5 203 371 21 50 chr9 3605079 3605219 -138666225 + L2 LINE L2 3123 3258 -14 1869 138 6 22 chr9 3605652 3605963 -138665481 + AluSx SINE Alu 1 306 -6 244 254 0 0 chr9 3606073 3606128 -138665316 - L1MC4 LINE L1 -1339 6703 6649 387 0 0 0 chr9 3606150 3606193 -138665251 + (TA)n Simple_repeat Simple_repeat 2 44 0 717 299 56 43 chr9 3606209 3606293 -138665151 - L1MC4 LINE L1 -2000 5808 5727 2030 113 14 7 chr9 3606293 3606585 -138664859 - AluSx SINE Alu -18 294 1 717 299 56 43 chr9 3606585 3606895 -138664549 - L1MC4 LINE L1 -2081 5727 5409 303 298 53 40 chr9 3606904 3607132 -138664312 - L1MC4 LINE L1 -818 5328 5098 455 280 98 43 chr9 3607231 3607831 -138663613 - L1MC4 LINE L1 -1207 4939 4284 2173 118 0 3 chr9 3607831 3608128 -138663316 + AluSx SINE Alu 1 296 -16 455 280 98 43 chr9 3608128 3608282 -138663162 - L1MC4 LINE L1 -1862 4284 4140 21 36 0 0 chr9 3609089 3609117 -138662327 + AT_rich Low_complexity Low_complexity 1 28 0 344 226 89 96 chr9 3609868 3610014 -138661430 + L1MC4a LINE L1 5820 5964 -1844 2179 105 0 10 chr9 3610062 3610376 -138661068 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr9 3610769 3610797 -138660647 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 3611003 3611032 -138660412 + AT_rich Low_complexity Low_complexity 1 29 0 180 238 0 0 chr9 3611505 3611568 -138659876 + (TA)n Simple_repeat Simple_repeat 1 63 0 2967 84 10 0 chr9 3611714 3612119 -138659325 - L1PA12 LINE L1 -7 6161 5753 375 262 0 36 chr9 3613740 3613824 -138657620 - MIR3 SINE MIR -19 189 109 2227 112 0 10 chr9 3614504 3614817 -138656627 + AluSx SINE Alu 1 310 -2 305 176 15 0 chr9 3615087 3615155 -138656289 - MER113 DNA MER1_type? -408 113 45 459 282 107 38 chr9 3616417 3616679 -138654765 + L2 LINE L2 1709 1988 -1326 1788 151 71 0 chr9 3617549 3617886 -138653558 - MER46B DNA MER2_type 0 236 1 208 354 89 54 chr9 3617887 3618492 -138652952 + L2 LINE L2 2619 3244 -28 24 32 0 0 chr9 3618918 3618949 -138652495 + AT_rich Low_complexity Low_complexity 1 31 0 636 282 14 53 chr9 3619234 3619443 -138652001 - MIR SINE MIR -4 258 58 2065 98 14 11 chr9 3620219 3620534 -138650910 + AluSx SINE Alu 1 316 0 23 33 0 0 chr9 3620674 3620704 -138650740 + AT_rich Low_complexity Low_complexity 1 30 0 219 390 83 38 chr9 3621614 3622083 -138649361 - L2 LINE L2 0 3313 2824 495 268 52 7 chr9 3622111 3622264 -138649180 - MER112 DNA MER1_type -11 249 90 242 244 12 93 chr9 3622313 3622399 -138649045 - MER112 DNA MER1_type -181 79 1 780 274 98 57 chr9 3622794 3623235 -138648209 + LTR67 LTR ERVL 99 557 0 940 226 0 5 chr9 3623922 3624112 -138647332 - MER5A DNA MER1_type 0 189 1 2164 105 0 3 chr9 3624188 3624484 -138646960 + AluSg SINE Alu 1 295 -15 562 222 40 0 chr9 3624964 3625090 -138646354 - L2 LINE L2 -1 3312 3182 7570 35 0 0 chr9 3625119 3626795 -138644649 + L1PA4 LINE L1 4477 6152 -3 300 289 22 0 chr9 3626808 3626898 -138644546 - L2 LINE L2 -1393 1921 1830 273 282 56 0 chr9 3627005 3627076 -138644368 - L2 LINE L2 -1 3312 3238 21 36 0 0 chr9 3628032 3628060 -138643384 + AT_rich Low_complexity Low_complexity 1 28 0 1263 164 5 14 chr9 3629642 3629861 -138641583 - MER46A DNA MER2_type 0 236 20 281 356 25 19 chr9 3630912 3631072 -138640372 - MIR SINE MIR -27 235 75 297 231 26 39 chr9 3631135 3631213 -138640231 - L2 LINE L2 -40 3273 3197 24 32 0 0 chr9 3631492 3631523 -138639921 + AT_rich Low_complexity Low_complexity 1 31 0 2060 131 3 3 chr9 3632419 3632717 -138638727 + AluSx SINE Alu 1 298 -14 1972 248 66 106 chr9 3632879 3632922 -138638522 - L1MC5 LINE L1 -164 7797 7754 2051 125 3 10 chr9 3632922 3633218 -138638226 + AluSq SINE Alu 1 294 -19 1972 248 66 106 chr9 3633218 3635196 -138636248 - L1MC5 LINE L1 -207 7754 5848 5325 170 55 28 chr9 3635403 3636650 -138634794 + L1MC1 LINE L1 5042 6322 -11 22 0 0 0 chr9 3636724 3636746 -138634698 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr9 3636853 3636876 -138634568 + (CAA)n Simple_repeat Simple_repeat 2 24 0 399 312 104 21 chr9 3636967 3637246 -138634198 + L1ME4a LINE L1 5257 5558 -612 237 243 40 59 chr9 3637428 3637580 -138633864 + L1ME4a LINE L1 5777 5925 -1883 210 284 15 0 chr9 3637587 3637654 -138633790 + (TA)n Simple_repeat Simple_repeat 2 69 0 234 225 0 67 chr9 3637657 3637746 -138633698 + L1ME4a LINE L1 5937 6019 -102 23 78 0 0 chr9 3637826 3637877 -138633567 + AT_rich Low_complexity Low_complexity 1 51 0 4144 264 113 50 chr9 3637977 3638259 -138633185 + L1MEc LINE L1 31 294 -5921 4089 27 0 0 chr9 3638259 3638738 -138632706 + L1PA3 LINE L1 5674 6152 -3 4144 264 113 50 chr9 3638738 3639683 -138631761 + L1MEc LINE L1 294 1178 -5037 334 265 0 0 chr9 3639683 3639766 -138631678 + FLAM SINE Alu 43 125 -8 4144 264 113 50 chr9 3639766 3641536 -138629908 + L1MEc LINE L1 1178 2836 -3379 471 35 0 0 chr9 3641536 3641593 -138629851 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4144 264 113 50 chr9 3641593 3642321 -138629123 + L1MEc LINE L1 2836 4042 -2173 438 69 0 0 chr9 3642321 3642379 -138629065 + (CA)n Simple_repeat Simple_repeat 2 59 0 4144 264 113 50 chr9 3642379 3642467 -138628977 + L1MEc LINE L1 4042 4123 -2092 26 30 0 0 chr9 3642785 3642818 -138628626 + AT_rich Low_complexity Low_complexity 1 33 0 465 174 58 0 chr9 3642826 3642947 -138628497 + L1M4 LINE L1 2904 3031 -3115 1735 145 20 3 chr9 3642956 3643259 -138628185 + L1MA4 LINE L1 5978 6285 -15 182 329 34 67 chr9 3643496 3643645 -138627799 + MIR SINE MIR 107 250 -12 2316 110 27 19 chr9 3644054 3644426 -138627018 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr9 3645111 3645147 -138626297 + AT_rich Low_complexity Low_complexity 1 36 0 713 138 0 17 chr9 3646948 3647064 -138624380 + FLAM_C SINE Alu 28 141 -2 1616 160 4 0 chr9 3647079 3647356 -138624088 + AluJb SINE Alu 33 310 0 228 266 31 94 chr9 3648961 3649089 -138622355 - MIR SINE MIR -33 229 110 388 200 166 35 chr9 3649173 3649265 -138622179 - MER113 DNA MER1_type? 0 521 442 1997 131 0 7 chr9 3649265 3649556 -138621888 - AluSc SINE Alu -20 289 1 388 200 166 35 chr9 3649556 3649608 -138621836 - MER113 DNA MER1_type? -79 442 358 2214 81 14 3 chr9 3650402 3650697 -138620747 + AluSc SINE Alu 1 298 -11 298 314 62 67 chr9 3651382 3651592 -138619852 - MLT1I LTR MaLR -119 290 82 812 54 8 31 chr9 3652006 3652136 -138619308 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1430 251 115 6 chr9 3652472 3652971 -138618473 + MLT1E2 LTR MaLR 92 626 0 23 68 0 0 chr9 3653612 3653656 -138617788 + AT_rich Low_complexity Low_complexity 1 44 0 251 305 76 19 chr9 3654301 3654406 -138617038 + L2 LINE L2 3198 3308 -5 1722 185 55 9 chr9 3654528 3654874 -138616570 - MLT1A1 LTR MaLR -1 364 3 205 26 53 26 chr9 3655195 3655233 -138616211 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2133 41 3 45 chr9 3655235 3655525 -138615919 - AluY SINE Alu -33 278 1 30 0 0 0 chr9 3655563 3655593 -138615851 + AT_rich Low_complexity Low_complexity 1 30 0 42 20 0 0 chr9 3655847 3655896 -138615548 + AT_rich Low_complexity Low_complexity 1 49 0 497 218 80 80 chr9 3655901 3656089 -138615355 + L1ME2 LINE L1 5966 6153 -11 28 48 0 0 chr9 3656396 3656438 -138615006 + AT_rich Low_complexity Low_complexity 1 42 0 366 355 86 19 chr9 3657030 3657298 -138614146 + L3b LINE CR1 1105 1390 -193 1238 288 49 14 chr9 3657442 3657872 -138613572 + LTR16C LTR ERVL 43 487 -4 1832 109 0 117 chr9 3657920 3658270 -138613174 - AluSg1 SINE Alu 0 309 1 350 280 56 0 chr9 3658516 3658641 -138612803 + MER113 DNA MER1_type? 309 440 -81 289 255 143 0 chr9 3658880 3658978 -138612466 + MIR3 SINE MIR 74 185 -23 223 263 13 26 chr9 3659085 3659161 -138612283 + GA-rich Low_complexity Low_complexity 3 77 0 2062 111 0 0 chr9 3659181 3659461 -138611983 + AluY SINE Alu 1 280 -31 297 75 0 0 chr9 3659461 3659501 -138611943 + (CA)n Simple_repeat Simple_repeat 1 40 0 3729 126 52 56 chr9 3659505 3660237 -138611207 + L1MB2 LINE L1 5432 6164 -7 181 339 18 0 chr9 3660252 3660308 -138611136 + MIR3 SINE MIR 137 193 -15 2197 105 0 0 chr9 3661064 3661358 -138610086 + AluY SINE Alu 1 294 -17 2968 215 59 48 chr9 3661391 3661956 -138609488 + L1ME1 LINE L1 5318 5887 -279 7454 31 7 0 chr9 3661956 3662984 -138608460 + L1PA5 LINE L1 5119 6152 -2 2968 215 59 48 chr9 3662984 3663256 -138608188 + L1ME1 LINE L1 5887 6154 -12 297 179 38 19 chr9 3663315 3663421 -138608023 - Charlie7 DNA MER1_type -74 2538 2431 672 282 143 27 chr9 3663421 3663793 -138607651 - Charlie7 DNA MER1_type -1892 720 306 2163 131 3 0 chr9 3663929 3664241 -138607203 - AluSq SINE Alu 0 313 1 451 302 93 22 chr9 3664440 3664708 -138606736 - L2 LINE L2 0 3313 3027 411 21 0 0 chr9 3665265 3665313 -138606131 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2083 108 10 7 chr9 3665316 3665612 -138605832 - AluSq SINE Alu -16 297 1 182 313 0 0 chr9 3665837 3665885 -138605559 + L2 LINE L2 3209 3256 -16 299 271 0 14 chr9 3665889 3665968 -138605476 - MIR SINE MIR -81 127 49 21 71 0 0 chr9 3666389 3666431 -138605013 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr9 3667308 3667334 -138604110 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr9 3667381 3667403 -138604041 + AT_rich Low_complexity Low_complexity 1 22 0 712 186 23 8 chr9 3667450 3667579 -138603865 - FRAM SINE Alu -45 131 1 390 246 79 0 chr9 3668427 3668541 -138602903 - L1MC4 LINE L1 0 8042 7920 195 42 0 0 chr9 3669126 3669150 -138602294 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 345 289 96 26 chr9 3669839 3669995 -138601449 + MIR SINE MIR 96 262 0 208 348 79 22 chr9 3670159 3670386 -138601058 + L2 LINE L2 2835 3074 -239 1851 135 83 0 chr9 3670812 3671101 -138600343 + AluSp SINE Alu 1 313 0 200 213 0 0 chr9 3671670 3671717 -138599727 + (TAA)n Simple_repeat Simple_repeat 1 47 0 445 353 54 5 chr9 3671717 3671941 -138599503 - MIR SINE MIR 0 262 28 208 376 21 0 chr9 3672433 3672526 -138598918 + L2 LINE L2 2941 3035 -237 201 167 0 0 chr9 3672670 3672700 -138598744 + L2 LINE L2 3206 3235 -37 * 221 300 0 0 chr9 3672699 3672749 -138598695 - L3 LINE CR1 -469 1108 1059 23 0 0 0 chr9 3672749 3672772 -138598672 + AT_rich Low_complexity Low_complexity 1 23 0 1587 179 100 3 chr9 3674940 3675269 -138596175 + MER46B DNA MER2_type 1 236 0 742 124 0 18 chr9 3675505 3675618 -138595826 + THE1B LTR MaLR 1 111 -253 1678 93 0 72 chr9 3675622 3675900 -138595544 + THE1-int LTR MaLR 1 258 -1322 2179 133 8 31 chr9 3675913 3676273 -138595171 + THE1B LTR MaLR 13 364 0 368 17 317 0 chr9 3676290 3676350 -138595094 - MADE1 DNA Mariner 0 80 2 338 238 20 0 chr9 3677076 3677177 -138594267 - MER113 DNA MER1_type? -323 198 96 757 258 104 43 chr9 3677185 3678197 -138593247 + HAL1 LINE L1 380 1534 -973 488 244 18 18 chr9 3678184 3678348 -138593096 + HAL1 LINE L1 2022 2185 -322 * 186 43 0 0 chr9 3678431 3678454 -138592990 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 446 291 20 45 chr9 3678514 3678713 -138592731 + HAL1 LINE L1 2285 2478 -29 21 36 0 0 chr9 3679104 3679132 -138592312 + AT_rich Low_complexity Low_complexity 1 28 0 1086 212 4 4 chr9 3679143 3679374 -138592070 + L1PB4 LINE L1 5925 6155 -1 21 36 0 0 chr9 3679530 3679558 -138591886 + AT_rich Low_complexity Low_complexity 1 28 0 2287 77 7 3 chr9 3679566 3679866 -138591578 + AluY SINE Alu 1 301 -10 204 312 205 9 chr9 3680365 3680580 -138590864 - L2 LINE L2 -5 3308 3052 328 217 0 72 chr9 3680647 3680730 -138590714 + L2 LINE L2 3232 3308 -5 6534 37 2 1 chr9 3681425 3682218 -138589226 - L1PA4 LINE L1 0 6155 5362 201 256 0 0 chr9 3682219 3682258 -138589186 + L3 LINE CR1 1526 1564 -13 410 296 140 34 chr9 3682885 3683064 -138588380 - MIR3 SINE MIR -9 199 2 457 297 30 30 chr9 3683156 3683321 -138588123 - MIR SINE MIR 0 262 98 352 254 164 0 chr9 3683370 3683480 -138587964 - Charlie8 DNA MER1_type -2190 227 100 632 0 0 0 chr9 3684236 3684312 -138587132 + L1HS LINE L1 6080 6155 0 312 282 55 55 chr9 3684407 3684537 -138586907 + Charlie8 DNA MER1_type 7 139 -202 2002 135 0 28 chr9 3684537 3684855 -138586589 + AluSq SINE Alu 1 309 -4 312 282 55 55 chr9 3684855 3684887 -138586557 + Charlie8 DNA MER1_type 138 169 -172 2168 111 3 0 chr9 3685054 3685352 -138586092 + AluSg SINE Alu 1 299 -11 380 211 0 0 chr9 3685500 3685576 -138585868 - MIR SINE MIR -106 156 81 850 258 41 9 chr9 3686134 3686355 -138585089 - MIR SINE MIR -33 229 2 32 26 0 0 chr9 3688035 3688074 -138583370 + AT_rich Low_complexity Low_complexity 1 39 0 446 295 54 63 chr9 3690235 3690550 -138580894 + L2 LINE L2 1762 2073 -1241 201 158 0 0 chr9 3690582 3690620 -138580824 + A-rich Low_complexity Low_complexity 5 42 0 216 367 0 46 chr9 3690700 3690809 -138580635 + L2 LINE L2 2207 2310 -1004 418 325 61 99 chr9 3691249 3691331 -138580113 + L2 LINE L2 2842 2926 -346 1695 165 3 25 chr9 3691331 3691646 -138579798 - AluJb SINE Alu -4 308 1 418 325 61 99 chr9 3691646 3692006 -138579438 + L2 LINE L2 2926 3267 -5 406 198 113 19 chr9 3692695 3692801 -138578643 - MIR SINE MIR -49 213 98 23 0 0 0 chr9 3692801 3692824 -138578620 + AT_rich Low_complexity Low_complexity 1 23 0 222 62 0 0 chr9 3693966 3693998 -138577446 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 285 135 0 0 chr9 3693997 3694049 -138577395 + (CA)n Simple_repeat Simple_repeat 1 52 0 290 315 170 6 chr9 3695170 3695335 -138576109 - MIR3 SINE MIR -7 201 10 558 0 0 0 chr9 3695546 3695608 -138575836 + (TG)n Simple_repeat Simple_repeat 1 62 0 1472 175 77 0 chr9 3696754 3697039 -138574405 - AluJb SINE Alu -5 307 1 923 103 0 0 chr9 3697057 3697183 -138574261 - AluSq/x SINE Alu -180 132 7 298 370 82 32 chr9 3699406 3699625 -138571819 - MIR SINE MIR -13 249 20 307 247 78 0 chr9 3699884 3699961 -138571483 + L1MC4 LINE L1 6614 6696 -1346 624 219 0 0 chr9 3700031 3700200 -138571244 + (TA)n Simple_repeat Simple_repeat 2 170 0 302 247 0 62 chr9 3700201 3700298 -138571146 + L1MC4 LINE L1 6613 6703 -1339 216 216 0 0 chr9 3700301 3700352 -138571092 + (TA)n Simple_repeat Simple_repeat 2 52 0 244 254 0 0 chr9 3700614 3700669 -138570775 - L1MC4 LINE L1 -1339 6703 6649 387 0 0 0 chr9 3700691 3700734 -138570710 + (TA)n Simple_repeat Simple_repeat 1 43 0 707 301 56 43 chr9 3700750 3700834 -138570610 - L1MC4 LINE L1 -2000 5808 5727 2030 113 14 7 chr9 3700834 3701126 -138570318 - AluSx SINE Alu -18 294 1 707 301 56 43 chr9 3701126 3701436 -138570008 - L1MC4 LINE L1 -2081 5727 5409 596 281 107 48 chr9 3701772 3702372 -138569072 - L1MC4 LINE L1 -1207 4939 4283 2173 118 0 3 chr9 3702372 3702669 -138568775 + AluSx SINE Alu 1 296 -16 596 281 107 48 chr9 3702669 3702823 -138568621 - L1MC4 LINE L1 -1863 4283 4140 21 36 0 0 chr9 3703629 3703657 -138567787 + AT_rich Low_complexity Low_complexity 1 28 0 344 226 89 96 chr9 3704408 3704554 -138566890 + L1MC4a LINE L1 5820 5964 -1844 2179 105 0 10 chr9 3704602 3704916 -138566528 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr9 3705309 3705337 -138566107 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 3705543 3705572 -138565872 + AT_rich Low_complexity Low_complexity 1 29 0 180 238 0 0 chr9 3706045 3706108 -138565336 + (TA)n Simple_repeat Simple_repeat 2 64 0 2906 89 10 2 chr9 3706254 3706660 -138564784 - L1PA12 LINE L1 -7 6161 5753 375 262 0 36 chr9 3708281 3708365 -138563079 - MIR3 SINE MIR -19 189 109 2227 112 0 10 chr9 3709045 3709358 -138562086 + AluSx SINE Alu 1 310 -2 305 176 15 0 chr9 3709628 3709696 -138561748 - MER113 DNA MER1_type? -408 113 45 459 282 107 38 chr9 3710958 3711220 -138560224 + L2 LINE L2 1709 1988 -1326 1788 151 71 0 chr9 3712090 3712427 -138559017 - MER46B DNA MER2_type 0 236 1 208 354 89 54 chr9 3712428 3713033 -138558411 + L2 LINE L2 2619 3244 -28 24 32 0 0 chr9 3713459 3713490 -138557954 + AT_rich Low_complexity Low_complexity 1 31 0 636 282 14 53 chr9 3713775 3713984 -138557460 - MIR SINE MIR -4 258 58 2065 98 14 11 chr9 3714760 3715075 -138556369 + AluSx SINE Alu 1 316 0 23 33 0 0 chr9 3715215 3715245 -138556199 + AT_rich Low_complexity Low_complexity 1 30 0 219 390 83 38 chr9 3716156 3716625 -138554819 - L2 LINE L2 0 3313 2824 495 268 52 7 chr9 3716653 3716806 -138554638 - MER112 DNA MER1_type -11 249 90 242 244 12 93 chr9 3716855 3716941 -138554503 - MER112 DNA MER1_type -181 79 1 780 274 98 57 chr9 3717336 3717777 -138553667 + LTR67 LTR ERVL 99 557 0 940 226 0 5 chr9 3718464 3718654 -138552790 - MER5A DNA MER1_type 0 189 1 2092 109 3 3 chr9 3718730 3719024 -138552420 + AluSg SINE Alu 1 294 -16 562 222 40 0 chr9 3719504 3719630 -138551814 - L2 LINE L2 -1 3312 3182 7504 36 2 1 chr9 3719659 3721336 -138550108 + L1PA4 LINE L1 4477 6155 0 328 217 0 72 chr9 3722031 3722114 -138549330 - L2 LINE L2 -5 3308 3232 204 312 205 9 chr9 3722181 3722396 -138549048 + L2 LINE L2 3052 3308 -5 2287 77 7 3 chr9 3722895 3723195 -138548249 - AluY SINE Alu -10 301 1 21 36 0 0 chr9 3723203 3723231 -138548213 + AT_rich Low_complexity Low_complexity 1 28 0 1086 212 4 4 chr9 3723387 3723618 -138547826 - L1PB4 LINE L1 -1 6155 5925 21 36 0 0 chr9 3723629 3723657 -138547787 + AT_rich Low_complexity Low_complexity 1 28 0 446 291 20 45 chr9 3724048 3724247 -138547197 - HAL1 LINE L1 -29 2478 2285 186 43 0 0 chr9 3724307 3724330 -138547114 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 488 244 18 18 chr9 3724413 3724577 -138546867 - HAL1 LINE L1 -322 2185 2022 323 235 10 61 chr9 3724564 3724662 -138546782 - HAL1 LINE L1 -973 1534 1442 * 316 258 30 68 chr9 3724800 3724932 -138546512 + L1MC4 LINE L1 6595 6721 -1321 411 165 0 0 chr9 3724932 3725017 -138546427 + (TA)n Simple_repeat Simple_repeat 1 85 0 775 188 29 0 chr9 3725024 3725162 -138546282 - FRAM SINE Alu -36 140 1 376 279 124 25 chr9 3726031 3726192 -138545252 - MIR SINE MIR -84 178 2 2152 217 112 11 chr9 3726412 3727431 -138544013 + L1MEc LINE L1 1982 3049 -3166 720 271 15 73 chr9 3727857 3728130 -138543314 + MIR SINE MIR 6 262 0 2218 115 0 0 chr9 3728160 3728465 -138542979 - AluSx SINE Alu -7 305 1 21 36 0 0 chr9 3729112 3729140 -138542304 + AT_rich Low_complexity Low_complexity 1 28 0 511 156 0 7 chr9 3729419 3729543 -138541901 + MER2 DNA MER2_type 1 204 -141 303 111 74 25 chr9 3729543 3729624 -138541820 - L1MA4A LINE L1 0 6303 6219 303 291 0 38 chr9 3729633 3729712 -138541732 + MER2 DNA MER2_type 270 345 0 404 205 47 94 chr9 3730228 3730355 -138541089 - MIR SINE MIR -56 206 86 286 327 77 0 chr9 3731369 3731473 -138539971 - MIR SINE MIR -40 222 111 24 0 0 0 chr9 3732688 3732712 -138538732 + AT_rich Low_complexity Low_complexity 1 24 0 2027 197 96 48 chr9 3732940 3733545 -138537899 + L1ME1 LINE L1 5504 6137 -29 320 77 19 0 chr9 3733546 3733598 -138537846 + (TA)n Simple_repeat Simple_repeat 2 54 0 2184 88 0 0 chr9 3733651 3733948 -138537496 + AluY SINE Alu 1 297 -14 2677 19 3 0 chr9 3734424 3734734 -138536710 - AluY SINE Alu 0 311 1 1542 167 13 39 chr9 3735022 3735328 -138536116 + AluJb SINE Alu 1 298 -14 664 249 63 34 chr9 3735706 3736056 -138535388 - L1ME LINE L1 -4879 1663 1304 257 191 0 0 chr9 3736214 3736261 -138535183 - MLT1K LTR MaLR -55 533 487 1110 135 30 30 chr9 3736299 3736499 -138534945 - L1MA5A LINE L1 -23 6274 6075 3203 116 18 60 chr9 3736499 3737049 -138534395 + MER1A DNA MER1_type 1 527 0 261 308 43 16 chr9 3737065 3737250 -138534194 - L1ME LINE L1 -5234 1400 1211 301 79 103 18 chr9 3737280 3737445 -138533999 + (TA)n Simple_repeat Simple_repeat 2 180 0 201 137 77 0 chr9 3737465 3737582 -138533862 + (TA)n Simple_repeat Simple_repeat 2 127 0 755 340 25 14 chr9 3737872 3738240 -138533204 - L1ME LINE L1 -5954 871 500 352 118 118 118 chr9 3738981 3739074 -138532370 - ORSL DNA AcHobo 0 275 183 2562 34 0 0 chr9 3739100 3739396 -138532048 - AluY SINE Alu -15 296 1 215 127 18 36 chr9 3739461 3739516 -138531928 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 192 284 84 84 chr9 3740401 3740496 -138530948 + MIR SINE MIR 38 132 -76 14025 129 29 104 chr9 3740764 3743702 -138527742 + Tigger2 DNA MER2_type 3 2718 0 1107 185 25 0 chr9 3743865 3744065 -138527379 - MER58A DNA MER1_type -19 205 1 414 230 30 10 chr9 3744123 3744223 -138527221 - MER5A DNA MER1_type -79 110 9 355 298 8 58 chr9 3744237 3744358 -138527086 + L2 LINE L2 3199 3313 0 226 396 9 0 chr9 3744594 3744700 -138526744 + L2 LINE L2 2877 2983 -289 4211 121 65 8 chr9 3744845 3745557 -138525887 - Tigger3(Golem) DNA MER2_type -1 3028 2277 652 185 0 0 chr9 3745548 3745656 -138525788 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 369 280 21 0 chr9 3745721 3745814 -138525630 + L2 LINE L2 3178 3272 0 207 0 0 0 chr9 3745877 3745900 -138525544 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 3747012 3747035 -138524409 + AT_rich Low_complexity Low_complexity 1 23 0 6811 240 124 21 chr9 3748493 3751165 -138520279 + L1ME1 LINE L1 2125 5074 -1141 3474 212 128 70 chr9 3751164 3751382 -138520062 + L1MC3 LINE L1 6371 6575 -1210 * 216 0 0 0 chr9 3751382 3751406 -138520038 + (GA)n Simple_repeat Simple_repeat 1 24 0 3474 212 128 70 chr9 3751406 3751903 -138519541 + L1MC3 LINE L1 6575 7042 -743 289 310 0 0 chr9 3751903 3751974 -138519470 + MLT1F1 LTR MaLR 64 134 -433 3474 212 128 70 chr9 3751974 3751991 -138519453 + L1MC3 LINE L1 7042 7057 -728 2226 95 0 0 chr9 3751991 3752296 -138519148 + AluSq SINE Alu 1 305 0 3474 212 128 70 chr9 3752296 3752827 -138518617 + L1MC3 LINE L1 7057 7784 -1 3170 214 59 29 chr9 3752823 3753265 -138518179 + L1ME1 LINE L1 5061 5488 -747 * 5180 84 13 0 chr9 3753265 3753963 -138517481 - L1PA11 LINE L1 0 6174 5468 3170 214 59 29 chr9 3753963 3754673 -138516771 + L1ME1 LINE L1 5488 6230 -5 737 318 32 48 chr9 3754691 3755065 -138516379 + L3 LINE CR1 1183 1550 -27 230 301 126 7 chr9 3755394 3755537 -138515907 - MIR SINE MIR 0 262 103 504 374 161 15 chr9 3755808 3756212 -138515232 + L2 LINE L2 2810 3272 0 1523 188 3 24 chr9 3758663 3758951 -138512493 - AluJo SINE Alu -30 282 1 461 260 64 46 chr9 3759171 3759344 -138512100 + MIR SINE MIR 70 245 -17 1632 150 25 50 chr9 3759709 3760029 -138511415 + AluJo SINE Alu 1 312 0 22 0 0 0 chr9 3760258 3760280 -138511164 + AT_rich Low_complexity Low_complexity 1 22 0 202 244 0 0 chr9 3760504 3760549 -138510895 + T-rich Low_complexity Low_complexity 1 45 0 1715 161 40 83 chr9 3761063 3761395 -138510049 + L1MC3 LINE L1 6696 7008 -777 1768 143 32 4 chr9 3761395 3761674 -138509770 + AluJb SINE Alu 1 287 -25 1715 161 40 83 chr9 3761674 3761762 -138509682 + L1MC3 LINE L1 7008 7098 -687 246 284 0 15 chr9 3761762 3761829 -138509615 + MLT1F1 LTR MaLR 45 110 -457 608 144 0 9 chr9 3761853 3761964 -138509480 + L1MC3 LINE L1 7674 7783 -2 1468 196 0 8 chr9 3762440 3762705 -138508739 + AluJo SINE Alu 1 263 -49 453 290 30 8 chr9 3763143 3763274 -138508170 + MIR SINE MIR 98 231 -31 2108 114 0 33 chr9 3763555 3763861 -138507583 + AluSx SINE Alu 6 301 -11 38 22 0 0 chr9 3763978 3764023 -138507421 + AT_rich Low_complexity Low_complexity 1 45 0 250 272 161 44 chr9 3764910 3765101 -138506343 - MIR3 SINE MIR -46 216 3 234 365 65 35 chr9 3765163 3765363 -138506081 + L2 LINE L2 2624 2829 -485 216 0 0 0 chr9 3765494 3765518 -138505926 + (TTCCC)n Simple_repeat Simple_repeat 4 27 0 291 278 15 91 chr9 3765535 3765733 -138505711 + L2 LINE L2 3083 3265 -48 1242 305 165 46 chr9 3765917 3766028 -138505416 - L3 LINE CR1 -471 1106 1010 850 212 111 49 chr9 3766028 3766372 -138505072 - MLT1A1 LTR MaLR 0 365 1 1242 305 165 46 chr9 3766372 3766998 -138504446 - L3 LINE CR1 -567 1010 233 2306 96 20 0 chr9 3766998 3767301 -138504143 + AluSc SINE Alu 1 309 0 1242 305 165 46 chr9 3767301 3767493 -138503951 - L3 LINE CR1 -1344 233 65 407 351 100 41 chr9 3767895 3768214 -138503230 - L2 LINE L2 -1 3271 2934 203 417 10 0 chr9 3769048 3769144 -138502300 + L3 LINE CR1 1472 1568 -9 21 0 0 0 chr9 3770555 3770576 -138500868 + AT_rich Low_complexity Low_complexity 1 21 0 45 0 0 0 chr9 3771202 3771247 -138500197 + AT_rich Low_complexity Low_complexity 1 45 0 4259 228 89 37 chr9 3772165 3773801 -138497643 + L1ME1 LINE L1 3591 5310 -836 1435 178 4 12 chr9 3773820 3774079 -138497365 + AluJo SINE Alu 1 257 -55 3111 200 71 28 chr9 3774098 3774912 -138496532 + L1ME1 LINE L1 5313 6161 -5 1974 149 0 41 chr9 3775419 3775735 -138495709 - AluSx SINE Alu -9 303 1 237 339 73 40 chr9 3776349 3776473 -138494971 - MIR3 SINE MIR -66 142 15 21 36 0 0 chr9 3776512 3776540 -138494904 + AT_rich Low_complexity Low_complexity 1 28 0 280 91 436 0 chr9 3776640 3776695 -138494749 - MADE1 DNA Mariner -1 79 1 244 267 0 0 chr9 3777167 3777257 -138494187 + L1MC4 LINE L1 6614 6703 -1339 310 228 33 43 chr9 3777278 3777370 -138494074 + L1MC4 LINE L1 6612 6702 -1340 235 225 22 67 chr9 3777389 3777478 -138493966 - L1MC4 LINE L1 -1339 6703 6619 285 98 0 0 chr9 3778947 3778988 -138492456 + (A)n Simple_repeat Simple_repeat 1 41 0 674 37 0 0 chr9 3779913 3779994 -138491450 + AluSg/x SINE Alu 216 296 -13 2403 62 0 43 chr9 3780435 3780759 -138490685 - AluY SINE Alu -1 310 1 274 233 14 41 chr9 3780949 3781022 -138490422 + MIR3 SINE MIR 127 197 -11 280 266 127 52 chr9 3781123 3781296 -138490148 - MIR SINE MIR -41 221 36 449 268 45 76 chr9 3781390 3781588 -138489856 - MIR SINE MIR -70 192 1 548 300 68 11 chr9 3782373 3782563 -138488881 + MIR SINE MIR 4 204 -58 764 169 22 7 chr9 3784104 3784240 -138487204 - MER5A DNA MER1_type -51 138 1 294 276 114 16 chr9 3784697 3784820 -138486624 - MIR SINE MIR -105 157 23 1982 146 3 13 chr9 3784946 3785261 -138486183 + AluJo SINE Alu 1 312 0 6591 66 6 75 chr9 3785344 3786328 -138485116 - LTR13 LTR ERVK 0 1007 92 822 124 23 0 chr9 3786332 3786461 -138484983 - LTR13 LTR ERVK -875 132 1 563 295 68 11 chr9 3786960 3787150 -138484294 + MIR SINE MIR 4 204 -58 1474 223 117 7 chr9 3787386 3787812 -138483632 - L1M4c LINE L1 -4550 1834 1362 210 270 48 0 chr9 3789361 3789424 -138482020 + MIR3 SINE MIR 90 155 -53 334 210 151 8 chr9 3789452 3789571 -138481873 - MIR SINE MIR -16 246 111 270 0 0 0 chr9 3790267 3790297 -138481147 + (T)n Simple_repeat Simple_repeat 1 30 0 1664 161 124 16 chr9 3790461 3790847 -138480597 + MSTA LTR MaLR 1 428 0 2293 85 7 0 chr9 3792216 3792510 -138478934 + AluSp SINE Alu 1 296 -17 955 203 77 55 chr9 3792514 3792565 -138478879 + L1ME2 LINE L1 5730 5778 -386 1668 195 7 10 chr9 3792565 3792872 -138478572 + AluJo SINE Alu 1 306 -6 955 203 77 55 chr9 3792872 3793130 -138478314 + L1ME2 LINE L1 5778 6046 -118 706 222 124 0 chr9 3793130 3793315 -138478129 - MER3 DNA MER1_type 0 209 2 488 210 24 12 chr9 3794248 3794415 -138477029 + CT-rich Low_complexity Low_complexity 6 174 0 459 0 0 0 chr9 3796930 3796981 -138474463 + (CA)n Simple_repeat Simple_repeat 1 51 0 35 24 0 0 chr9 3797588 3797630 -138473814 + GC_rich Low_complexity Low_complexity 1 42 0 277 242 0 0 chr9 3797760 3797826 -138473618 + (CA)n Simple_repeat Simple_repeat 1 66 0 290 26 26 0 chr9 3797904 3797943 -138473501 + (GGA)n Simple_repeat Simple_repeat 1 40 0 276 77 0 0 chr9 3798029 3798068 -138473376 + (GA)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr9 3798187 3798214 -138473230 + (CA)n Simple_repeat Simple_repeat 1 27 0 27 29 0 0 chr9 3799308 3799342 -138472102 + AT_rich Low_complexity Low_complexity 1 34 0 1499 208 10 17 chr9 3799783 3800071 -138471373 + AluJo SINE Alu 1 286 -26 1165 175 0 54 chr9 3800638 3800861 -138470583 - AluJo SINE Alu -17 295 85 733 247 123 0 chr9 3801044 3801271 -138470173 + MIR SINE MIR 8 262 0 1598 161 11 90 chr9 3802507 3802885 -138468559 - MER7A DNA MER2_type 0 346 1 412 288 106 8 chr9 3803458 3803590 -138467854 + MIR3 SINE MIR 59 203 -5 198 0 0 0 chr9 3804013 3804035 -138467409 + (GA)n Simple_repeat Simple_repeat 2 23 0 22 43 0 21 chr9 3804387 3804413 -138467031 + AT_rich Low_complexity Low_complexity 1 27 -19 2380 82 0 0 chr9 3804413 3804705 -138466739 + AluY SINE Alu 1 292 -19 22 43 0 21 chr9 3804705 3804725 -138466719 + AT_rich Low_complexity Low_complexity 27 46 0 21 36 0 0 chr9 3804874 3804902 -138466542 + AT_rich Low_complexity Low_complexity 1 28 0 1290 177 62 11 chr9 3806024 3806324 -138465120 + AluJb SINE Alu 13 325 0 23 68 0 0 chr9 3808198 3808242 -138463202 + AT_rich Low_complexity Low_complexity 1 44 0 1101 148 55 0 chr9 3808664 3808866 -138462578 - L1MA3 LINE L1 -1 6304 6092 282 233 140 107 chr9 3810775 3810925 -138460519 - MIR3 SINE MIR -25 183 29 210 37 0 0 chr9 3811783 3811810 -138459634 + (TG)n Simple_repeat Simple_repeat 2 28 0 184 375 0 0 chr9 3812759 3812815 -138458629 - L2 LINE L2 -69 3203 3148 1223 217 126 10 chr9 3812869 3813178 -138458266 - MER2 DNA MER2_type 0 345 1 505 278 176 14 chr9 3813185 3813401 -138458043 + MIR SINE MIR 12 262 0 214 258 0 0 chr9 3814036 3814102 -138457342 + (TA)n Simple_repeat Simple_repeat 1 66 0 22 0 0 0 chr9 3814533 3814555 -138456889 + AT_rich Low_complexity Low_complexity 1 22 0 533 242 32 112 chr9 3814752 3815091 -138456353 - L2 LINE L2 0 3313 3002 286 202 79 0 chr9 3815260 3815374 -138456070 + T-rich Low_complexity Low_complexity 5 127 0 3226 250 60 76 chr9 3815538 3817034 -138454410 - L1M4 LINE L1 -5057 1485 14 22 35 0 0 chr9 3817124 3817153 -138454291 + AT_rich Low_complexity Low_complexity 1 29 0 502 278 73 28 chr9 3817792 3818234 -138453210 - MLT1G1 LTR MaLR -11 584 45 367 277 20 68 chr9 3818427 3818575 -138452869 + MIR SINE MIR 71 211 -51 488 308 87 5 chr9 3818768 3818953 -138452491 - MIR SINE MIR 0 262 63 225 300 0 0 chr9 3818959 3819009 -138452435 + L2 LINE L2 3263 3312 -1 23 33 0 0 chr9 3819195 3819225 -138452219 + AT_rich Low_complexity Low_complexity 1 30 0 658 326 100 16 chr9 3819394 3819882 -138451562 + L1ME LINE L1 5268 5796 -325 346 249 116 52 chr9 3820908 3821081 -138450363 + MER20 DNA MER1_type 29 212 -7 233 212 212 0 chr9 3821093 3821159 -138450285 + L2 LINE L2 3229 3308 -5 208 287 161 0 chr9 3821463 3821550 -138449894 + MIR SINE MIR 12 112 -150 427 297 27 60 chr9 3821562 3821632 -138449812 + MIR SINE MIR 84 155 -107 766 248 97 19 chr9 3821632 3821942 -138449502 - MER46C DNA MER2_type 0 338 5 427 297 27 60 chr9 3821942 3822056 -138449388 + MIR SINE MIR 155 262 0 1251 176 9 94 chr9 3822518 3822836 -138448608 + AluJo SINE Alu 1 291 -21 28 48 0 0 chr9 3822836 3822878 -138448566 + AT_rich Low_complexity Low_complexity 1 42 0 297 315 79 0 chr9 3823008 3823135 -138448309 - MIR SINE MIR -6 256 120 2340 84 10 3 chr9 3823558 3823869 -138447575 + AluSp SINE Alu 1 313 0 769 163 0 15 chr9 3824736 3824871 -138446573 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chr9 3825498 3825530 -138445914 + AT_rich Low_complexity Low_complexity 1 32 0 211 257 71 62 chr9 3825576 3825689 -138445755 + MIR SINE MIR 99 212 -50 21 57 0 0 chr9 3826824 3826859 -138444585 + AT_rich Low_complexity Low_complexity 1 35 0 26 64 0 0 chr9 3828133 3828180 -138443264 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr9 3828509 3828544 -138442900 + AT_rich Low_complexity Low_complexity 1 35 0 235 191 12 143 chr9 3829791 3829875 -138441569 - L2 LINE L2 -14 3299 3227 322 320 55 17 chr9 3830057 3830238 -138441206 + MER115 DNA AcHobo 1 188 -505 545 306 120 45 chr9 3830291 3830667 -138440777 + MER115 DNA AcHobo 290 693 0 2375 70 3 0 chr9 3831118 3831416 -138440028 + AluY SINE Alu 1 299 -12 273 57 0 0 chr9 3831416 3831451 -138439993 + (TA)n Simple_repeat Simple_repeat 1 35 0 276 244 37 0 chr9 3832001 3832081 -138439363 - Charlie1 DNA MER1_type -10 2751 2669 504 248 62 76 chr9 3832081 3832291 -138439153 + MER63A DNA MER1_type 1 207 -3 947 182 148 14 chr9 3832293 3832584 -138438860 - Charlie1 DNA MER1_type -85 2676 2347 254 130 0 37 chr9 3832789 3832843 -138438601 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 328 340 19 0 chr9 3834368 3834471 -138436973 - MIR SINE MIR -111 151 47 26 0 0 0 chr9 3837135 3837161 -138434283 + AT_rich Low_complexity Low_complexity 1 26 0 195 114 0 0 chr9 3837971 3838006 -138433438 + (CAAAG)n Simple_repeat Simple_repeat 5 39 0 2124 138 3 3 chr9 3839260 3839572 -138431872 - AluSx SINE Alu 0 312 1 25 0 0 0 chr9 3839577 3839602 -138431842 + AT_rich Low_complexity Low_complexity 1 25 0 2310 59 3 26 chr9 3839685 3839991 -138431453 + AluY SINE Alu 1 299 -12 21 36 0 0 chr9 3840987 3841015 -138430429 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 3841112 3841135 -138430309 + AT_rich Low_complexity Low_complexity 1 23 0 237 65 0 0 chr9 3841813 3841844 -138429600 + (TC)n Simple_repeat Simple_repeat 2 32 0 517 36 102 18 chr9 3841845 3842011 -138429433 + (TA)n Simple_repeat Simple_repeat 1 180 0 378 121 75 46 chr9 3842033 3842267 -138429177 + (TA)n Simple_repeat Simple_repeat 1 240 0 1652 173 7 3 chr9 3843398 3843682 -138427762 - AluJo SINE Alu -27 285 1 1306 44 0 0 chr9 3844491 3844651 -138426793 + L1PA5 LINE L1 5793 5952 -202 4420 157 32 11 chr9 3844751 3845573 -138425871 - L1MA8 LINE L1 -165 6126 5288 1881 141 7 14 chr9 3846348 3846639 -138424805 + AluSx SINE Alu 1 289 -23 263 220 0 30 chr9 3846919 3847019 -138424425 + (TA)n Simple_repeat Simple_repeat 2 98 0 368 304 36 60 chr9 3847191 3847527 -138423917 - L1ME4a LINE L1 -236 5885 5558 368 190 53 115 chr9 3847565 3847791 -138423653 + L2 LINE L2 2665 2876 -438 461 252 17 0 chr9 3847977 3848096 -138423348 + L2 LINE L2 3188 3308 -5 288 130 0 0 chr9 3848129 3848175 -138423269 + (T)n Simple_repeat Simple_repeat 1 46 0 283 286 75 20 chr9 3848410 3848557 -138422887 - L1ME1 LINE L1 -252 5914 5760 1063 175 14 28 chr9 3848918 3849129 -138422315 - MER3 DNA MER1_type -1 208 1 333 301 30 0 chr9 3849482 3849615 -138421829 - L1ME4a LINE L1 -218 5903 5767 262 179 0 71 chr9 3849699 3849755 -138421689 + AluJb SINE Alu 75 126 -176 23 54 0 0 chr9 3849955 3849992 -138421452 + AT_rich Low_complexity Low_complexity 1 37 0 386 196 82 10 chr9 3850853 3850950 -138420494 - MSTB LTR MaLR 0 426 323 19182 90 6 4 chr9 3850950 3853584 -138417860 + L1P LINE L1 31 2669 -3477 2038 163 70 0 chr9 3854444 3854813 -138416631 + MER57A LTR ERV1 8 402 -1 283 355 58 25 chr9 3854906 3855027 -138416417 - L2 LINE L2 0 3272 3148 491 271 79 22 chr9 3856214 3856443 -138415001 - L1MEd LINE L1 -4877 1242 1001 319 262 75 97 chr9 3856447 3856726 -138414718 - L1MEd LINE L1 -5161 958 686 317 343 36 29 chr9 3857694 3857834 -138413610 + MIR3 SINE MIR 2 142 -66 180 125 0 0 chr9 3857892 3857924 -138413520 + (A)n Simple_repeat Simple_repeat 1 32 0 402 332 111 5 chr9 3858924 3859141 -138412303 + MIR SINE MIR 10 249 -13 1108 257 49 18 chr9 3859261 3859713 -138411731 + L1M4 LINE L1 4247 4712 -1434 2040 86 0 0 chr9 3859713 3859969 -138411475 + AluY SINE Alu 37 292 -19 652 226 12 54 chr9 3861002 3861170 -138410274 - MER105 DNA DNA -42 162 2 339 182 0 0 chr9 3861808 3861863 -138409581 - Alu SINE Alu -244 56 2 621 296 62 33 chr9 3863117 3863357 -138408087 - MIR SINE MIR -14 248 2 402 299 52 52 chr9 3863863 3864057 -138407387 + L2 LINE L2 3120 3313 0 2272 98 0 3 chr9 3864116 3864411 -138407033 + AluSx SINE Alu 2 295 -17 511 326 80 46 chr9 3864411 3864801 -138406643 - L2 LINE L2 -21 3292 2890 1307 161 0 58 chr9 3864803 3865045 -138406399 + AluJo SINE Alu 85 312 0 1024 312 42 51 chr9 3865060 3865682 -138405762 - L2 LINE L2 -429 2885 2270 1850 258 43 11 chr9 3866272 3866998 -138404446 + L1MC/D LINE L1 3268 4016 -2130 829 187 0 20 chr9 3867003 3867153 -138404291 + AluJo SINE Alu 1 147 -165 186 43 0 0 chr9 3867177 3867200 -138404244 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3273 235 67 17 chr9 3867204 3868546 -138402898 + L1MC/D LINE L1 4028 5434 -743 492 175 42 8 chr9 3868994 3869114 -138402330 - L1MA5 LINE L1 -29 6271 6148 319 338 80 0 chr9 3869207 3869358 -138402086 - MIR SINE MIR -1 261 99 258 32 0 0 chr9 3869513 3869544 -138401900 + (CA)n Simple_repeat Simple_repeat 2 32 0 208 170 57 0 chr9 3870016 3870069 -138401375 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 288 226 16 0 chr9 3870095 3870157 -138401287 - MER2 DNA MER2_type 0 345 283 382 216 11 0 chr9 3870170 3870259 -138401185 - MER2 DNA MER2_type -150 89 1 3436 85 11 60 chr9 3870992 3871559 -138399885 - LTR10B LTR ERV1 0 547 9 26 64 0 0 chr9 3871663 3871710 -138399734 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 3871761 3871793 -138399651 + AT_rich Low_complexity Low_complexity 1 32 0 275 263 246 0 chr9 3871957 3872071 -138399373 - L2 LINE L2 -4 3309 3168 500 313 74 16 chr9 3872554 3872797 -138398647 - MIR SINE MIR 0 262 6 2284 89 0 3 chr9 3872915 3873217 -138398227 - AluSx SINE Alu -10 302 2 1905 116 0 0 chr9 3874120 3874378 -138397066 - AluSc SINE Alu -17 292 35 2648 121 16 14 chr9 3875519 3875951 -138395493 + L1MA5A LINE L1 5852 6287 -10 1752 130 54 7 chr9 3875951 3876227 -138395217 - AluSg SINE Alu -21 289 1 2648 121 16 14 chr9 3876227 3876239 -138395205 + L1MA5A LINE L1 6287 6297 0 419 347 40 22 chr9 3876597 3876822 -138394622 + L2 LINE L2 2071 2299 -1015 258 331 90 34 chr9 3876947 3877084 -138394360 + MIR SINE MIR 20 171 -91 2398 75 0 31 chr9 3877084 3877402 -138394042 + AluY SINE Alu 1 308 -3 258 331 90 34 chr9 3877402 3877442 -138394002 + MIR SINE MIR 171 207 -55 603 212 71 88 chr9 3877592 3877759 -138393685 + L1MC3 LINE L1 6886 7045 -740 180 77 0 0 chr9 3877759 3877785 -138393659 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 603 212 71 88 chr9 3877785 3877956 -138393488 + L1MC3 LINE L1 7045 7218 -567 568 185 34 0 chr9 3877998 3878117 -138393327 + L1MC3 LINE L1 5857 5979 -1806 1032 171 0 30 chr9 3878117 3878316 -138393128 + L1MC3 LINE L1 7307 7499 -286 1857 163 32 29 chr9 3878326 3878882 -138392562 + MLT2A2 LTR ERVL 1 554 0 965 159 3 103 chr9 3878883 3879173 -138392271 + L1MC3 LINE L1 7507 7767 -18 2151 30 0 0 chr9 3880964 3881232 -138390212 - L1PA4 LINE L1 -173 5982 5715 1277 65 0 0 chr9 3881232 3881392 -138390052 + L1PA4 LINE L1 5986 6153 -2 2728 219 22 16 chr9 3881553 3881846 -138389598 - MER82 DNA MER2_type -5 648 358 2518 78 0 3 chr9 3881846 3882153 -138389291 + AluSq SINE Alu 3 308 -5 2728 219 22 16 chr9 3882153 3882499 -138388945 - MER82 DNA MER2_type -295 358 5 3308 158 18 1 chr9 3882553 3883248 -138388196 + L1P4 LINE L1 4739 5441 -727 3656 206 60 13 chr9 3883356 3885261 -138386183 - L1MC2 LINE L1 -296 6048 4046 2392 90 3 7 chr9 3885854 3886164 -138385280 - AluSq SINE Alu -4 309 1 2110 117 0 7 chr9 3886893 3887203 -138384241 + AluSg SINE Alu 1 308 0 232 262 19 0 chr9 3888507 3888610 -138382834 + GA-rich Low_complexity Low_complexity 2 106 0 382 304 249 33 chr9 3889293 3890439 -138381005 - L2 LINE L2 -189 3083 1684 1005 195 0 16 chr9 3890489 3890674 -138380770 + AluJo SINE Alu 123 304 -8 369 272 97 9 chr9 3893138 3893252 -138378192 - L2 LINE L2 -3 3310 3187 243 277 36 18 chr9 3893967 3894079 -138377365 + L1ME4a LINE L1 5966 6079 -42 192 40 0 0 chr9 3895376 3895401 -138376043 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 215 345 0 0 chr9 3896061 3896119 -138375325 + MIR SINE MIR 194 251 -11 1820 149 22 0 chr9 3896763 3897070 -138374374 + AluSx SINE Alu 2 314 0 1393 183 10 11 chr9 3897104 3897415 -138374029 + MLT1A1 LTR MaLR 1 358 -7 2736 3 0 0 chr9 3898301 3898619 -138372825 + L1PA2 LINE L1 5689 6006 -149 2566 56 0 0 chr9 3899157 3899459 -138371985 + AluY SINE Alu 1 302 -9 296 167 33 0 chr9 3899708 3899726 -138371718 - AluS SINE Alu -246 62 46 1672 107 9 0 chr9 3899726 3899951 -138371493 - AluSg/x SINE Alu -12 298 72 296 167 33 0 chr9 3899951 3899992 -138371452 - AluS SINE Alu -262 46 1 2203 135 125 2 chr9 3900429 3900971 -138370473 - MER39B LTR ERV1 0 653 1 2779 135 107 13 chr9 3901336 3901821 -138369623 - LTR24C LTR ERV1 -29 606 61 2136 142 3 0 chr9 3901821 3902131 -138369313 - AluSx SINE Alu -1 311 1 2779 135 107 13 chr9 3902131 3902199 -138369245 - LTR24C LTR ERV1 -574 61 1 506 203 152 7 chr9 3902281 3902419 -138369025 + MER5A DNA MER1_type 26 183 -6 262 44 22 22 chr9 3902605 3902650 -138368794 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 233 331 164 28 chr9 3902840 3903127 -138368317 + L2 LINE L2 1125 1450 -1864 923 190 11 6 chr9 3903224 3903398 -138368046 - Tigger2 DNA MER2_type -2 2716 2542 320 134 0 0 chr9 3903477 3903544 -138367900 - Tigger2 DNA MER2_type -177 2541 2475 1955 139 0 0 chr9 3903545 3903812 -138367632 + AluSx SINE Alu 1 267 -45 1725 188 16 10 chr9 3903954 3904263 -138367181 + AluJb SINE Alu 1 311 -1 798 277 84 20 chr9 3904263 3904610 -138366834 - L1MCb LINE L1 -5104 941 573 1598 264 31 30 chr9 3904702 3905278 -138366166 - L1MCb LINE L1 -5467 578 2 2263 106 0 0 chr9 3905306 3905608 -138365836 - AluSx SINE Alu -10 302 1 209 405 0 17 chr9 3905645 3905761 -138365683 + L2 LINE L2 3154 3267 -5 202 160 40 0 chr9 3905766 3905816 -138365628 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 186 71 48 24 chr9 3906313 3906355 -138365089 + (TA)n Simple_repeat Simple_repeat 1 43 0 2137 110 17 0 chr9 3906433 3906732 -138364712 + AluSx SINE Alu 3 306 -6 895 284 92 57 chr9 3906921 3907562 -138363882 - L2 LINE L2 -82 3231 2560 324 175 21 62 chr9 3910098 3910195 -138361249 - MER34B LTR ERV1 0 565 473 273 228 22 22 chr9 3910172 3910264 -138361180 - LTR48 LTR ERV1 -65 722 631 * 2107 142 0 0 chr9 3910269 3910578 -138360866 + AluSx SINE Alu 1 309 -3 1256 161 161 20 chr9 3911258 3911512 -138359932 + AluJo SINE Alu 1 290 -12 743 246 68 50 chr9 3913227 3913447 -138357997 + LTR33 LTR ERVL 1 224 -297 544 255 101 27 chr9 3913475 3913663 -138357781 + LTR33 LTR ERVL 312 513 -8 2208 142 31 29 chr9 3913694 3914075 -138357369 - MLT1B LTR MaLR -8 382 1 262 304 108 0 chr9 3914400 3914520 -138356924 + MLT1J LTR MaLR 38 131 -315 600 290 94 27 chr9 3914771 3914995 -138356449 - MIR SINE MIR -21 241 3 27969 33 3 1 chr9 3915074 3919274 -138352170 - L1PA4 LINE L1 -3 6152 1945 3414 234 95 26 chr9 3920318 3922164 -138349280 - L1ME1 LINE L1 -5 6161 4178 364 262 24 36 chr9 3922290 3922458 -138348986 - HAL1b LINE L1 -435 913 748 * 622 303 101 21 chr9 3922440 3922777 -138348667 + L1MEd LINE L1 6 369 -5750 497 171 0 0 chr9 3923183 3923259 -138348185 + AluJ/FLAM SINE Alu 6 81 -231 382 93 0 0 chr9 3923338 3923392 -138348052 + Alu SINE Alu 243 296 -6 182 333 56 0 chr9 3924139 3924229 -138347215 + MIR SINE MIR 49 143 -119 1963 117 4 0 chr9 3924461 3924734 -138346710 - AluSx SINE Alu 0 312 39 22 35 0 0 chr9 3924825 3924854 -138346590 + AT_rich Low_complexity Low_complexity 1 29 0 436 123 74 164 chr9 3925100 3925222 -138346222 + FRAM SINE Alu 49 159 -17 586 249 117 10 chr9 3925518 3925715 -138345729 - MIR SINE MIR 0 262 45 2091 137 0 0 chr9 3925777 3926070 -138345374 + AluY SINE Alu 1 293 -18 1492 130 0 5 chr9 3926316 3926532 -138344912 + AluSg/x SINE Alu 88 302 -10 509 379 86 19 chr9 3926545 3927078 -138344366 + L2 LINE L2 2268 2836 -478 272 368 40 0 chr9 3927497 3927622 -138343822 + L2 LINE L2 2907 3036 -236 684 325 51 0 chr9 3927632 3927869 -138343575 - MIR SINE MIR -3 259 11 2136 133 0 0 chr9 3928079 3928381 -138343063 + AluSg SINE Alu 1 302 -8 296 217 36 12 chr9 3929762 3929845 -138341599 + MLT1J1 LTR MaLR 360 444 -2 1428 167 0 0 chr9 3930279 3930495 -138340949 + AluJb SINE Alu 72 287 -25 32 0 0 0 chr9 3930885 3930917 -138340527 + AT_rich Low_complexity Low_complexity 1 32 0 1643 126 84 11 chr9 3930917 3931179 -138340265 - AluSx SINE Alu -31 281 1 520 265 90 90 chr9 3932305 3932716 -138338728 + MLT1J LTR MaLR 1 411 -100 502 254 24 102 chr9 3932921 3933126 -138338318 + MIR SINE MIR 20 208 -54 252 0 0 0 chr9 3933151 3933179 -138338265 + (CA)n Simple_repeat Simple_repeat 2 29 0 297 315 130 0 chr9 3933250 3933396 -138338048 + MIR3 SINE MIR 33 197 -11 313 281 30 85 chr9 3933430 3933582 -138337862 + L1ME3A LINE L1 5968 6108 -62 1731 204 66 75 chr9 3933582 3934141 -138337303 - MLT2B3 LTR ERVL 0 554 1 313 281 30 85 chr9 3934141 3934187 -138337257 + L1ME3A LINE L1 6108 6155 -15 2366 82 3 0 chr9 3934261 3934565 -138336879 + AluSg SINE Alu 1 305 -5 499 157 104 17 chr9 3934916 3935031 -138336413 - L1MC2 LINE L1 0 6344 6220 31403 108 10 59 chr9 3935211 3941660 -138329784 - L1PA7 LINE L1 -15 6139 12 1143 138 5 0 chr9 3941670 3941859 -138329585 - L1MC2 LINE L1 -108 6236 6047 6759 129 24 57 chr9 3941872 3942361 -138329083 - Tigger3b DNA MER2_type -1823 1205 701 1941 124 0 37 chr9 3942361 3942660 -138328784 + AluJb SINE Alu 1 288 -24 6759 129 24 57 chr9 3942660 3943416 -138328028 - Tigger3b DNA MER2_type -2327 701 1 1702 149 63 23 chr9 3943436 3943785 -138327659 - L1MC2 LINE L1 -339 6005 5643 2223 113 3 0 chr9 3943954 3944256 -138327188 + AluSg SINE Alu 1 303 -7 2244 98 0 7 chr9 3944602 3944899 -138326545 + AluSx SINE Alu 3 297 -15 366 345 91 0 chr9 3945503 3945668 -138325776 + MIR SINE MIR 49 228 -34 276 345 78 0 chr9 3945701 3945843 -138325601 + MIR SINE MIR 85 237 -25 770 177 0 0 chr9 3946862 3946986 -138324458 + AluSg/x SINE Alu 170 293 -19 846 237 71 0 chr9 3947511 3947709 -138323735 + MER58C DNA MER1_type 4 215 0 273 242 44 77 chr9 3948459 3948550 -138322894 + MER102b DNA MER1_type 254 341 0 4174 122 10 57 chr9 3948572 3949345 -138322099 + L1MB3 LINE L1 5440 6176 -7 193 333 0 0 chr9 3949400 3949448 -138321996 + MIR SINE MIR 49 96 -166 335 364 120 16 chr9 3949644 3950104 -138321340 - L2 LINE L2 -221 3051 2550 313 335 29 41 chr9 3950180 3950350 -138321094 + L2 LINE L2 2201 2368 -946 181 305 183 37 chr9 3950688 3950791 -138320653 + MIR SINE MIR 60 147 -115 533 247 114 6 chr9 3950791 3950949 -138320495 + MER5B DNA MER1_type 1 175 -3 181 305 183 37 chr9 3950949 3951009 -138320435 + MIR SINE MIR 147 247 -15 * 570 284 111 0 chr9 3951004 3951212 -138320232 - MIR SINE MIR 0 262 32 525 312 74 39 chr9 3953149 3953551 -138317893 - L2 LINE L2 -205 3108 2682 356 270 26 59 chr9 3953865 3954017 -138317427 + L1M4 LINE L1 3843 3989 -2157 1059 135 30 110 chr9 3954357 3954594 -138316850 - MER20 DNA MER1_type 0 219 2 1086 238 45 79 chr9 3954696 3955100 -138316344 - MLT1B LTR MaLR 0 390 1 377 328 65 14 chr9 3955239 3955809 -138315635 + L1M4 LINE L1 4151 4793 -1353 2418 67 0 3 chr9 3956020 3956320 -138315124 - AluY SINE Alu -12 299 1 336 325 33 8 chr9 3956429 3956549 -138314895 - L2 LINE L2 -703 2611 2489 3474 217 117 45 chr9 3956570 3957713 -138313731 - MER69B DNA AcHobo -1 1225 1 201 300 0 0 chr9 3957716 3957766 -138313678 - L2 LINE L2 -833 2481 2432 2689 218 65 37 chr9 3957840 3958616 -138312828 + L1MDb LINE L1 457 1389 -5020 1770 152 0 7 chr9 3958698 3958968 -138312476 + AluJb SINE Alu 1 268 -44 214 75 75 0 chr9 3959016 3959056 -138312388 + A-rich Low_complexity Low_complexity 6 48 0 2419 152 43 10 chr9 3959082 3959496 -138311948 + MSTA LTR MaLR 1 428 0 633 157 9 0 chr9 3959496 3959604 -138311840 + MSTA-int LTR MaLR 1 109 -1542 1581 156 0 8 chr9 3959604 3959848 -138311596 + MSTB LTR MaLR 185 426 0 1453 242 63 0 chr9 3959848 3960278 -138311166 + L1MDb LINE L1 1503 1959 -4447 889 189 0 0 chr9 3960281 3960434 -138311010 + FRAM SINE Alu 14 166 -10 2969 236 71 10 chr9 3960540 3961787 -138309657 + L1MDb LINE L1 2072 3379 -3027 2212 299 105 66 chr9 3961813 3963073 -138308371 + L2 LINE L2 984 2320 -994 1599 190 58 0 chr9 3963073 3963368 -138308076 + AluJb SINE Alu 1 312 0 2212 299 105 66 chr9 3963368 3963691 -138307753 + L2 LINE L2 2320 2629 -685 494 337 7 95 chr9 3964321 3964615 -138306829 + L3 LINE CR1 110 377 -1200 480 299 184 0 chr9 3964638 3964855 -138306589 - MIR SINE MIR 0 262 6 324 383 54 9 chr9 3964934 3965156 -138306288 + L3 LINE CR1 483 714 -863 2330 121 57 45 chr9 3965165 3965534 -138305910 + MSTA LTR MaLR 1 377 -51 1733 163 144 21 chr9 3965534 3965915 -138305529 + MSTA LTR MaLR 1 428 0 2330 121 57 45 chr9 3965915 3965968 -138305476 + MSTA LTR MaLR 377 428 0 187 239 137 34 chr9 3965968 3966085 -138305359 + L3 LINE CR1 724 852 -725 4858 28 11 0 chr9 3966091 3966663 -138304781 + L1PA4 LINE L1 5575 6152 -3 36 53 0 0 chr9 3967155 3967212 -138304232 + AT_rich Low_complexity Low_complexity 1 57 0 644 264 115 19 chr9 3967405 3967666 -138303778 + L3 LINE CR1 936 1221 -356 732 318 61 0 chr9 3967751 3967965 -138303479 + MIR SINE MIR 3 229 -33 2087 142 33 28 chr9 3968290 3968650 -138302794 + THE1B LTR MaLR 3 364 0 300 215 51 13 chr9 3969084 3969163 -138302281 - L1MDb LINE L1 -5440 969 888 1056 308 99 62 chr9 3969170 3969654 -138301790 - L2 LINE L2 -6 3307 2842 1678 178 45 0 chr9 3969654 3969940 -138301504 + AluJb SINE Alu 1 299 -13 1056 308 99 62 chr9 3969940 3970288 -138301156 - L2 LINE L2 -471 2842 2508 2490 63 0 0 chr9 3970288 3970587 -138300857 + AluY SINE Alu 1 299 -12 1056 308 99 62 chr9 3970587 3970958 -138300486 - L2 LINE L2 -805 2508 2058 330 302 213 0 chr9 3971189 3971358 -138300086 - L2 LINE L2 -1320 1994 1790 282 359 34 17 chr9 3971722 3971839 -138299605 - MIR3 SINE MIR -54 154 36 2459 63 7 3 chr9 3971945 3972248 -138299196 + AluY SINE Alu 1 304 -7 640 343 30 18 chr9 3972492 3972827 -138298617 + HERVL LTR ERVL 3569 3907 -1747 2037 146 21 29 chr9 3972827 3973205 -138298239 - THE1C LTR MaLR 0 375 1 1478 381 34 5 chr9 3973437 3974403 -138297041 + HERVL LTR ERVL 3962 4955 -699 613 263 120 31 chr9 3974814 3975068 -138296376 + LTR16A LTR ERVL 3 282 -175 813 196 0 0 chr9 3975070 3975213 -138296231 - FLAM_C SINE Alu 0 143 1 5211 175 90 0 chr9 3975580 3976516 -138294928 + LTR28 LTR ERV1 1 1020 0 23 33 0 0 chr9 3976531 3976561 -138294883 + AT_rich Low_complexity Low_complexity 1 30 0 507 165 31 0 chr9 3976809 3976906 -138294538 - L1M4 LINE L1 -539 5645 5546 210 91 0 0 chr9 3977377 3977410 -138294034 + (T)n Simple_repeat Simple_repeat 1 33 0 204 297 0 31 chr9 3978298 3978362 -138293082 - MER5A DNA MER1_type 0 189 128 25 0 0 0 chr9 3978392 3978417 -138293027 + AT_rich Low_complexity Low_complexity 1 25 0 258 240 8 104 chr9 3978624 3978749 -138292695 - L1MC/D LINE L1 -1921 5887 5775 390 293 24 16 chr9 3978760 3978883 -138292561 + MER5A DNA MER1_type 44 167 -22 404 316 26 52 chr9 3980164 3980319 -138291125 - MIR3 SINE MIR -48 160 10 220 238 0 32 chr9 3981041 3981104 -138290340 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 326 146 12 61 chr9 3982519 3982601 -138288843 - HAL1 LINE L1 0 2507 2430 4433 97 11 32 chr9 3982692 3983354 -138288090 - MER39B LTR ERV1 -1 652 5 255 291 6 55 chr9 3983400 3983565 -138287879 - L1MC5 LINE L1 -33 7928 7772 2034 252 68 43 chr9 3983584 3983869 -138287575 - L1ME3A LINE L1 -13 6157 5881 2490 87 3 0 chr9 3983869 3984181 -138287263 - AluSp SINE Alu 0 313 1 2034 252 68 43 chr9 3984181 3985519 -138285925 - L1ME3A LINE L1 -289 5881 4484 247 316 51 17 chr9 3985743 3985920 -138285524 - HAL1 LINE L1 -1198 1309 1127 243 0 0 0 chr9 3985935 3985962 -138285482 + (TA)n Simple_repeat Simple_repeat 2 28 0 5945 115 7 3 chr9 3985962 3987308 -138284136 - L1PA15 LINE L1 -10 7574 6223 4417 201 18 10 chr9 3987310 3988333 -138283111 - L1PA15 LINE L1 -1435 6130 5100 545 202 23 55 chr9 3988315 3988533 -138282911 - HAL1 LINE L1 -1341 1166 956 * 566 137 0 0 chr9 3988538 3988640 -138282804 - L1MA8 LINE L1 -7 6284 6183 787 277 68 10 chr9 3988665 3989077 -138282367 - L1ME3A LINE L1 -1678 4468 4033 1093 159 0 23 chr9 3989081 3989257 -138282187 - AluJb SINE Alu -140 172 1 16913 148 68 5 chr9 3989257 3990662 -138280782 - L1PA15 LINE L1 -4385 3180 1865 204 40 0 0 chr9 3990662 3990687 -138280757 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 16913 148 68 5 chr9 3990687 3992263 -138279181 - L1PA15 LINE L1 -5700 1865 11 17218 140 18 10 chr9 3992359 3995642 -138275802 - L1PA11 LINE L1 -2 7610 4286 2264 99 3 10 chr9 3995642 3995946 -138275498 - AluSg SINE Alu -8 302 1 17218 140 18 10 chr9 3995946 3996660 -138274784 - L1PA11 LINE L1 -3326 4286 3579 28613 120 11 57 chr9 3996673 4002708 -138268736 - L1PA7 LINE L1 -15 6139 426 219 36 0 0 chr9 4002708 4002736 -138268708 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28613 120 11 57 chr9 4002736 4003133 -138268311 - L1PA7 LINE L1 -5728 426 12 4722 239 25 37 chr9 4003144 4005668 -138265776 - L1PA11 LINE L1 -3999 3585 7 827 244 41 51 chr9 4005679 4006069 -138265375 - L1M4 LINE L1 -951 5195 4810 652 256 122 48 chr9 4006072 4006639 -138264805 - L1MDb LINE L1 -5024 1194 630 362 367 66 15 chr9 4006703 4006899 -138264545 - L1MDb LINE L1 -5831 565 360 961 273 60 78 chr9 4007926 4008513 -138262931 + MER77 LTR ERV1 54 602 -3 825 217 38 79 chr9 4008521 4008901 -138262543 + MLT1A1 LTR MaLR 1 422 -6 757 179 0 0 chr9 4009483 4009606 -138261838 + FLAM_A SINE Alu 2 124 -9 519 260 8 0 chr9 4009765 4009892 -138261552 + MLT1L LTR MaLR 430 557 -58 195 129 0 0 chr9 4010142 4010173 -138261271 + (T)n Simple_repeat Simple_repeat 1 31 0 2036 98 7 11 chr9 4010176 4010453 -138260991 - AluSx SINE Alu 0 312 37 387 316 193 30 chr9 4011455 4011724 -138259720 - L3 LINE CR1 -85 1492 1180 348 316 72 24 chr9 4011816 4012189 -138259255 + L1MC4 LINE L1 7098 7488 -554 381 203 127 0 chr9 4012359 4012477 -138258967 + L1ME4a LINE L1 5977 6109 -12 250 387 34 42 chr9 4012529 4012767 -138258677 - L3 LINE CR1 -400 1177 942 502 316 17 11 chr9 4012824 4012998 -138258446 + MIR SINE MIR 87 261 -1 380 248 46 9 chr9 4013996 4014105 -138257339 - MLT1L LTR MaLR -339 276 164 2313 86 14 0 chr9 4014360 4014651 -138256793 - AluSx SINE Alu -17 295 1 270 355 118 0 chr9 4015181 4015274 -138256170 + MIR SINE MIR 31 134 -74 298 324 88 99 chr9 4015300 4015766 -138255678 - L2 LINE L2 0 3272 2812 207 162 0 0 chr9 4016308 4016345 -138255099 + CT-rich Low_complexity Low_complexity 3 39 0 1681 235 54 7 chr9 4017190 4017595 -138253849 + MER45B DNA AcHobo 1 424 -616 5242 120 24 14 chr9 4017595 4018544 -138252900 + L1MA8 LINE L1 5195 6154 -137 5793 108 13 2 chr9 4018556 4019506 -138251938 - L1PA8 LINE L1 -758 5388 4429 6002 68 2 9 chr9 4019506 4020287 -138251157 + L1PA8 LINE L1 5388 6492 -209 2304 107 0 3 chr9 4020287 4020596 -138250848 + AluSc SINE Alu 1 308 -1 6002 68 2 9 chr9 4020596 4020805 -138250639 + L1PA8 LINE L1 6492 6701 0 2689 164 91 2 chr9 4020813 4021360 -138250084 + MER45B DNA AcHobo 411 1006 -34 1045 45 8 0 chr9 4021437 4021569 -138249875 - L1PA7 LINE L1 -4 6150 6018 384 109 0 0 chr9 4021569 4021624 -138249820 + MER45B DNA AcHobo 984 1038 -2 1687 178 16 3 chr9 4021774 4022134 -138249310 + L1PB4 LINE L1 5812 6175 0 184 234 0 64 chr9 4022275 4022322 -138249122 + L2 LINE L2 3213 3256 -16 871 269 98 52 chr9 4022633 4023094 -138248350 - MLT1J LTR MaLR -8 503 22 2097 120 3 3 chr9 4023338 4023639 -138247805 - AluSx SINE Alu -6 306 6 376 330 28 0 chr9 4023753 4023862 -138247582 - MER5A DNA MER1_type -10 179 68 342 0 0 0 chr9 4025938 4025976 -138245468 + (TA)n Simple_repeat Simple_repeat 2 39 0 225 277 0 0 chr9 4027564 4027629 -138243815 + MLT1K LTR MaLR 519 583 -5 183 309 79 63 chr9 4027780 4027906 -138243538 - MIR SINE MIR 0 262 135 256 282 70 0 chr9 4028272 4028343 -138243101 - MIR SINE MIR -79 129 54 696 225 22 0 chr9 4028389 4028527 -138242917 - MER5A DNA MER1_type -29 160 20 24 32 0 0 chr9 4029375 4029406 -138242038 + AT_rich Low_complexity Low_complexity 1 31 0 1585 150 132 6 chr9 4029739 4030072 -138241372 + THE1C LTR MaLR 1 375 0 200 343 159 17 chr9 4030381 4030553 -138240891 - MIR3 SINE MIR -64 198 4 12765 180 40 47 chr9 4030571 4032464 -138238980 - L1MA4A LINE L1 0 7365 5460 180 0 0 0 chr9 4032464 4032484 -138238960 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 12765 180 40 47 chr9 4032484 4035152 -138236292 - L1MA4A LINE L1 -1905 5460 2646 1319 102 11 0 chr9 4035152 4035329 -138236115 - AluSp SINE Alu -3 310 132 12765 180 40 47 chr9 4035329 4037251 -138234193 - L1MA4A LINE L1 -4719 2646 712 1840 274 72 31 chr9 4037640 4038349 -138233095 - L1MA4A LINE L1 -6471 738 1 182 340 0 0 chr9 4038628 4038681 -138232763 - L2 LINE L2 0 3313 3261 301 200 60 184 chr9 4038724 4038909 -138232535 - MER5B DNA MER1_type 0 178 17 341 0 0 43 chr9 4039126 4039172 -138232272 + (CATTA)n Simple_repeat Simple_repeat 4 47 0 213 154 0 0 chr9 4039193 4039232 -138232212 + (TG)n Simple_repeat Simple_repeat 1 39 0 260 269 0 0 chr9 4039384 4039436 -138232008 - MIR3 SINE MIR -34 174 123 231 167 0 0 chr9 4040029 4040071 -138231373 + (CTG)n Simple_repeat Simple_repeat 1 42 0 477 300 170 0 chr9 4040418 4040618 -138230826 + MIR SINE MIR 29 262 0 416 244 64 32 chr9 4041079 4041235 -138230209 - MLT1J LTR MaLR -23 488 328 2239 109 7 7 chr9 4041642 4041946 -138229498 - AluSc SINE Alu -5 304 1 31 26 0 0 chr9 4041979 4042017 -138229427 + AT_rich Low_complexity Low_complexity 1 38 0 250 316 0 0 chr9 4042107 4042183 -138229261 + L1ME LINE L1 176 251 -5954 517 330 100 45 chr9 4042479 4043058 -138228386 + L1ME LINE L1 567 1177 -5028 489 304 35 3 chr9 4043084 4043373 -138228071 + L1ME LINE L1 1259 1556 -4840 207 0 0 0 chr9 4043407 4043430 -138228014 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1639 268 151 20 chr9 4043515 4045012 -138226432 + L1ME LINE L1 2169 3825 -2390 303 259 259 26 chr9 4045060 4045249 -138226195 + L1ME LINE L1 3998 4230 -1985 1796 107 40 10 chr9 4045250 4045549 -138225895 + L1PB2 LINE L1 5722 6037 -114 728 280 83 34 chr9 4045547 4046101 -138225343 + L1ME LINE L1 4569 5149 -1066 * 349 299 75 7 chr9 4047127 4047274 -138224170 + MIR SINE MIR 105 261 -1 1946 97 19 58 chr9 4047410 4047573 -138223871 - AluSg1 SINE Alu -9 300 132 239 0 0 31 chr9 4047573 4047605 -138223839 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1946 97 19 58 chr9 4047605 4047621 -138223823 - AluSg1 SINE Alu -177 132 117 2604 33 0 0 chr9 4047621 4047925 -138223519 - AluYb8 SINE Alu -14 304 1 1946 97 19 58 chr9 4047925 4048055 -138223389 - AluSg1 SINE Alu -192 117 2 749 210 26 65 chr9 4048418 4048647 -138222797 + MER112 DNA MER1_type 1 220 -40 279 233 106 100 chr9 4049086 4049247 -138222197 - MIR SINE MIR -57 205 45 186 43 0 0 chr9 4049389 4049412 -138222032 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1560 200 82 43 chr9 4051405 4051891 -138219553 - MLT1D LTR MaLR 0 505 1 465 250 22 71 chr9 4051983 4052167 -138219277 - MER5B DNA MER1_type -3 175 1 273 198 0 0 chr9 4054564 4054645 -138216799 + (CA)n Simple_repeat Simple_repeat 1 81 0 260 286 58 39 chr9 4054967 4055173 -138216271 + LTR16B LTR ERVL 4 213 -251 497 246 128 45 chr9 4057119 4057517 -138213927 - L1ME4a LINE L1 -4 6117 5687 1594 278 154 88 chr9 4058750 4059799 -138211645 - L2 LINE L2 0 3313 2334 204 40 0 0 chr9 4059799 4059824 -138211620 + (GGAGA)n Simple_repeat Simple_repeat 2 26 0 1594 278 154 88 chr9 4059824 4059961 -138211483 - L2 LINE L2 -979 2334 2207 553 234 16 0 chr9 4059961 4060085 -138211359 + MER94 DNA DNA 9 134 0 1594 278 154 88 chr9 4060085 4060516 -138210928 - L2 LINE L2 -1106 2207 1442 251 281 157 0 chr9 4060924 4061010 -138210434 + MIR SINE MIR 55 149 -59 2214 120 0 0 chr9 4061959 4062258 -138209186 - AluSx SINE Alu -13 299 1 295 337 61 0 chr9 4063418 4063516 -138207928 - L2 LINE L2 0 3272 3169 21 0 0 0 chr9 4063516 4063537 -138207907 + AT_rich Low_complexity Low_complexity 1 21 0 2745 74 21 5 chr9 4063537 4063915 -138207529 - L1PA10 LINE L1 0 6168 5785 215 271 0 0 chr9 4064125 4064184 -138207260 - L2 LINE L2 -298 2974 2916 2359 98 0 0 chr9 4064202 4064497 -138206947 + AluSg SINE Alu 1 295 -15 32 26 0 0 chr9 4064536 4064575 -138206869 + AT_rich Low_complexity Low_complexity 1 39 0 1056 183 18 22 chr9 4064699 4064928 -138206516 + MER96B DNA MER1_type? 190 417 0 208 167 0 0 chr9 4065382 4065418 -138206026 + L2 LINE L2 3273 3308 -5 2259 116 0 3 chr9 4066691 4067001 -138204443 - AluSx SINE Alu -3 309 1 2306 99 0 10 chr9 4067366 4067670 -138203774 - AluSq SINE Alu -12 301 1 2701 194 98 17 chr9 4068353 4068395 -138203049 + MER63C DNA MER1_type 11 48 -1012 267 31 0 0 chr9 4068395 4068427 -138203017 + (CA)n Simple_repeat Simple_repeat 2 33 0 2701 194 98 17 chr9 4068427 4069137 -138202307 + MER63C DNA MER1_type 48 824 -106 938 201 6 0 chr9 4069137 4069301 -138202143 - FRAM SINE Alu -7 169 5 415 234 21 0 chr9 4069305 4069399 -138202045 + MER63C DNA MER1_type 817 912 -18 297 279 77 93 chr9 4069460 4069707 -138201737 + MLT1J LTR MaLR 1 243 -268 382 182 130 71 chr9 4069753 4069907 -138201537 - MLT1J2 LTR MaLR -22 428 266 863 200 12 0 chr9 4070070 4070240 -138201204 - Tigger1 DNA MER2_type -2246 172 1 1327 190 0 4 chr9 4070337 4070563 -138200881 + AluJo SINE Alu 84 308 -4 1606 159 36 47 chr9 4071354 4071655 -138199789 + AluJb SINE Alu 1 298 -14 2405 80 7 0 chr9 4071839 4072140 -138199304 - AluSq SINE Alu -10 303 1 245 259 0 0 chr9 4072710 4072764 -138198680 + (TG)n Simple_repeat Simple_repeat 2 55 0 879 201 6 22 chr9 4072764 4072791 -138198653 - MER45A DNA AcHobo -1404 177 151 7613 27 0 0 chr9 4072791 4074186 -138197258 + L1PA4 LINE L1 4757 6152 -3 879 201 6 22 chr9 4074186 4074337 -138197107 - MER45A DNA AcHobo -1430 151 2 344 306 27 55 chr9 4074524 4074707 -138196737 + MIR SINE MIR 56 233 -29 21 36 0 0 chr9 4075552 4075580 -138195864 + AT_rich Low_complexity Low_complexity 1 28 0 407 316 21 16 chr9 4076937 4077124 -138194320 + MER117 DNA MER1_type 10 197 0 221 277 121 48 chr9 4077274 4077440 -138194004 - MIR SINE MIR 0 262 85 284 102 20 0 chr9 4080527 4080576 -138190868 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 998 216 50 0 chr9 4081073 4081295 -138190149 - MIR SINE MIR -8 254 22 185 387 40 0 chr9 4081334 4081409 -138190035 - L3 LINE CR1 -92 1485 1408 685 269 97 36 chr9 4081508 4081898 -138189546 - LTR16C LTR ERVL -18 473 60 980 175 6 0 chr9 4082033 4082199 -138189245 + MER5A DNA MER1_type 1 167 -22 567 275 86 57 chr9 4082389 4082796 -138188648 - MLT1J LTR MaLR -23 488 70 2357 93 0 0 chr9 4084082 4084383 -138187061 + AluY SINE Alu 1 301 -10 735 272 68 36 chr9 4084852 4085102 -138186342 + MIR SINE MIR 4 261 -1 275 292 358 0 chr9 4085277 4085414 -138186030 - MER5A DNA MER1_type 0 189 4 291 306 150 25 chr9 4085427 4085587 -138185857 + MIR SINE MIR 53 232 -30 1807 127 33 7 chr9 4085682 4086019 -138185425 + AluSx SINE Alu 1 344 0 1150 224 37 104 chr9 4086268 4086644 -138184800 + L1MEc LINE L1 36 373 -6023 2185 92 3 10 chr9 4086644 4086948 -138184496 + AluSx SINE Alu 1 302 -10 1150 224 37 104 chr9 4086948 4087061 -138184383 + L1MEc LINE L1 373 492 -5904 910 228 0 0 chr9 4087062 4087220 -138184224 + FRAM SINE Alu 1 157 -19 1920 216 145 8 chr9 4087252 4087899 -138183545 + L1MEc LINE L1 518 1253 -5143 1459 216 62 55 chr9 4087900 4087979 -138183465 + L1MEc LINE L1 1759 1836 -4560 1869 176 3 6 chr9 4087979 4088292 -138183152 - AluJb SINE Alu 0 312 1 1459 216 62 55 chr9 4088292 4088444 -138183000 + L1MEc LINE L1 1836 1985 -4411 1884 185 0 6 chr9 4088444 4088758 -138182686 - AluJo SINE Alu 0 312 1 1459 216 62 55 chr9 4088758 4089090 -138182354 + L1MEc LINE L1 1985 2327 -4069 * 3397 231 57 65 chr9 4089088 4090436 -138181008 + L1MEc LINE L1 2966 4297 -1918 1657 105 24 0 chr9 4090436 4090684 -138180760 + L1PA10 LINE L1 5915 6168 0 3397 231 57 65 chr9 4090684 4091048 -138180396 + L1MEc LINE L1 4297 4663 -1552 18766 157 46 25 chr9 4091054 4097904 -138173540 + L1M1 LINE L1 18 7008 -713 288 0 0 0 chr9 4098199 4098231 -138173213 + (A)n Simple_repeat Simple_repeat 1 32 0 1438 243 130 18 chr9 4098611 4099258 -138172186 + L2 LINE L2 2565 3311 -2 214 167 0 0 chr9 4099738 4099774 -138171670 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 4099937 4099989 -138171455 + AT_rich Low_complexity Low_complexity 1 52 0 643 277 116 55 chr9 4100085 4100811 -138170633 - L1MC4 LINE L1 -143 7899 7130 351 44 0 0 chr9 4100813 4100858 -138170586 + (TG)n Simple_repeat Simple_repeat 2 46 0 878 248 28 88 chr9 4101007 4101249 -138170195 - L1MC4 LINE L1 -981 7061 6849 2179 118 7 0 chr9 4101249 4101538 -138169906 - AluSx SINE Alu -21 291 1 878 248 28 88 chr9 4101538 4101682 -138169762 - L1MC4 LINE L1 -1193 6849 6698 206 229 147 83 chr9 4101922 4102031 -138169413 - MIR SINE MIR -70 138 23 5332 156 14 6 chr9 4102106 4103801 -138167643 + L1PA15 LINE L1 4309 6164 -1 963 177 23 0 chr9 4103938 4104113 -138167331 + MER5A DNA MER1_type 8 186 -3 227 313 31 0 chr9 4104564 4104628 -138166816 + MIR SINE MIR 119 184 -78 310 344 81 12 chr9 4105153 4105400 -138166044 + L2 LINE L2 2199 2462 -852 319 220 11 33 chr9 4105591 4105682 -138165762 - MIR SINE MIR -1 261 173 217 345 116 34 chr9 4105646 4105998 -138165446 + L2 LINE L2 2672 3059 -213 * 383 354 186 11 chr9 4106251 4106632 -138164812 - L2 LINE L2 0 3272 2825 1866 164 7 0 chr9 4106977 4107287 -138164157 + AluSx SINE Alu 1 312 0 3022 179 59 14 chr9 4107397 4108045 -138163399 + L1MB5 LINE L1 5492 6168 -6 6344 61 2 24 chr9 4108130 4109522 -138161922 + L1PA7 LINE L1 4774 6134 -20 285 29 0 0 chr9 4109522 4109556 -138161888 + (TG)n Simple_repeat Simple_repeat 2 35 0 366 325 43 11 chr9 4109564 4109752 -138161692 + L1M4 LINE L1 4260 4453 -1693 23 33 0 0 chr9 4110164 4110194 -138161250 + AT_rich Low_complexity Low_complexity 1 30 0 1384 74 0 23 chr9 4110217 4110393 -138161051 + AluY SINE Alu 1 172 -139 22 35 0 0 chr9 4111079 4111108 -138160336 + AT_rich Low_complexity Low_complexity 1 29 0 2570 49 0 0 chr9 4112009 4112315 -138159129 - AluY SINE Alu -5 306 1 306 206 31 19 chr9 4112390 4112488 -138158956 - L1ME LINE L1 -355 5766 5668 2469 62 0 13 chr9 4112488 4112793 -138158651 - AluY SINE Alu -10 301 1 306 206 31 19 chr9 4112793 4112826 -138158618 - L1ME LINE L1 -453 5668 5637 2474 55 3 3 chr9 4112976 4113286 -138158158 - AluY SINE Alu -1 310 1 446 194 21 11 chr9 4113542 4113635 -138157809 + MER20 DNA MER1_type 1 94 -125 447 123 14 0 chr9 4114448 4114521 -138156923 + AluS SINE Alu 1 74 -239 2233 66 3 35 chr9 4114660 4114978 -138156466 + AluY SINE Alu 1 308 -3 4008 191 52 27 chr9 4114992 4116623 -138154821 - L1MB2 LINE L1 -18 6153 4565 208 69 0 0 chr9 4116630 4116659 -138154785 + (TTTTG)n Simple_repeat Simple_repeat 4 80 0 2032 127 0 10 chr9 4116659 4116942 -138154502 - AluJb SINE Alu -6 306 1 4008 191 52 27 chr9 4116942 4117316 -138154128 - L1MB2 LINE L1 -1606 4565 4104 2373 55 3 35 chr9 4117316 4117626 -138153818 + AluY SINE Alu 1 300 -11 4008 191 52 27 chr9 4117626 4117656 -138153788 - L1MB2 LINE L1 -2067 4104 4076 35931 55 7 2 chr9 4117665 4123279 -138148165 - L1PA5 LINE L1 0 6154 511 347 62 31 31 chr9 4123381 4123445 -138147999 + Alu SINE Alu 237 300 -1 4130 207 127 36 chr9 4123459 4124160 -138147284 + L1MCb LINE L1 636 1272 -5292 2520 46 0 7 chr9 4124160 4124464 -138146980 - AluY SINE Alu -9 302 1 4130 207 127 36 chr9 4124464 4125525 -138145919 + L1MCb LINE L1 1272 2236 -4328 7265 47 5 0 chr9 4125525 4126586 -138144858 + L1PA5 LINE L1 5094 6151 -3 4130 207 127 36 chr9 4126586 4127361 -138144083 + L1MCb LINE L1 2236 3351 -3213 1239 246 47 0 chr9 4127369 4127756 -138143688 + L1MCb LINE L1 3908 4312 -2252 334 131 0 0 chr9 4127762 4127823 -138143621 + L1MC2 LINE L1 6274 6334 -10 2497 244 29 33 chr9 4127828 4128826 -138142618 + L1M4 LINE L1 2490 3483 -2663 1659 160 19 0 chr9 4129049 4129318 -138142126 - AluSx SINE Alu -38 274 1 313 343 56 9 chr9 4129977 4130085 -138141359 - MIR3 SINE MIR -93 115 3 1498 196 31 10 chr9 4130332 4130623 -138140821 - AluJo SINE Alu -15 297 1 360 298 158 35 chr9 4131161 4131332 -138140112 + MIR3 SINE MIR 3 194 -14 1691 195 36 28 chr9 4131555 4131944 -138139500 - MSTD LTR MaLR -4 392 1 4248 127 46 29 chr9 4133709 4135062 -138136382 + pTR5 LTR ERV1 738 2438 0 364 267 59 0 chr9 4135203 4135304 -138136140 - MIR3 SINE MIR -15 193 87 2343 87 23 0 chr9 4135644 4135944 -138135500 - AluSq SINE Alu -6 307 1 243 88 0 0 chr9 4136572 4136606 -138134838 + (TG)n Simple_repeat Simple_repeat 2 35 0 617 309 168 23 chr9 4136964 4137362 -138134082 + L3 LINE CR1 1101 1556 -21 780 286 61 12 chr9 4137648 4138087 -138133357 - MLT1J LTR MaLR -23 488 7 22 35 0 0 chr9 4138262 4138291 -138133153 + AT_rich Low_complexity Low_complexity 1 29 0 282 338 135 24 chr9 4139007 4139214 -138132230 - MIR SINE MIR -16 246 17 246 183 9 148 chr9 4139398 4139454 -138131990 - MLT1L LTR MaLR -6 609 575 1147 170 5 0 chr9 4139454 4139642 -138131802 + MER5A DNA MER1_type 1 189 0 246 183 9 148 chr9 4139642 4139700 -138131744 - MLT1L LTR MaLR -40 575 511 591 269 36 5 chr9 4139816 4140009 -138131435 - MLT1L LTR MaLR -289 326 128 369 308 38 8 chr9 4141111 4141244 -138130200 + MIR3 SINE MIR 49 185 -23 542 254 37 0 chr9 4141301 4141435 -138130009 + MIR SINE MIR 47 185 -77 618 193 107 0 chr9 4141693 4141843 -138129601 - MER5A DNA MER1_type -10 179 14 402 299 21 35 chr9 4141855 4141999 -138129445 - MER5A DNA MER1_type -28 161 20 281 237 0 118 chr9 4142511 4142604 -138128840 - MIR SINE MIR 0 262 181 1498 139 12 8 chr9 4142848 4143092 -138128352 + THE1B LTR MaLR 120 364 0 1045 266 39 53 chr9 4143121 4143535 -138127909 + MER20B DNA MER1_type 100 507 -276 296 279 0 0 chr9 4143547 4143626 -138127818 + (TA)n Simple_repeat Simple_repeat 2 80 0 886 246 14 7 chr9 4143699 4143975 -138127469 + MER20B DNA MER1_type 505 782 -1 325 350 72 6 chr9 4144544 4144724 -138126720 - MIR SINE MIR -50 212 21 613 265 180 17 chr9 4144988 4145410 -138126034 + MLT1H1 LTR MaLR 32 522 -33 189 0 0 0 chr9 4145775 4145796 -138125648 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 714 142 0 0 chr9 4145799 4145905 -138125539 - AluSx SINE Alu -23 289 184 1347 99 5 36 chr9 4145985 4146177 -138125267 - AluSx SINE Alu -126 186 1 359 291 56 56 chr9 4147804 4148055 -138123389 + L2 LINE L2 2271 2521 -793 1871 146 17 0 chr9 4148479 4148781 -138122663 + AluSx SINE Alu 1 307 -5 693 199 8 0 chr9 4148906 4149037 -138122407 - FLAM_A SINE Alu -1 132 1 203 393 10 81 chr9 4149046 4149354 -138122090 + L2 LINE L2 2901 3186 -86 1028 271 80 18 chr9 4149427 4149826 -138121618 + L1ME3 LINE L1 5486 5909 -261 2179 78 25 6 chr9 4149851 4150173 -138121271 + LTR7 LTR ERV1 121 448 -2 268 237 25 51 chr9 4150281 4150399 -138121045 + L1ME3 LINE L1 5967 6081 -81 1716 152 35 7 chr9 4150433 4150716 -138120728 - AluJb SINE Alu -21 291 1 249 108 0 0 chr9 4150794 4150831 -138120613 + (GA)n Simple_repeat Simple_repeat 2 38 0 540 101 13 0 chr9 4152179 4152258 -138119186 + MADE1 DNA Mariner 1 80 0 341 161 70 119 chr9 4152338 4152481 -138118963 - L1ME4a LINE L1 -11 6110 5975 2188 132 3 0 chr9 4153911 4154222 -138117222 - AluSx SINE Alu 0 312 1 26 0 0 0 chr9 4154222 4154248 -138117196 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr9 4154910 4154952 -138116492 + AT_rich Low_complexity Low_complexity 1 42 0 2250 77 3 46 chr9 4155482 4155807 -138115637 - AluY SINE Alu 0 311 1 1545 176 137 56 chr9 4156197 4156664 -138114780 - MLT1D LTR MaLR 0 505 1 212 263 0 0 chr9 4157021 4157078 -138114366 + (CATA)n Simple_repeat Simple_repeat 4 60 0 504 289 19 120 chr9 4157106 4157212 -138114232 - L2 LINE L2 -199 3114 2999 2254 125 0 0 chr9 4157212 4157515 -138113929 + AluSx SINE Alu 1 303 -9 504 289 19 120 chr9 4157515 4157674 -138113770 - L2 LINE L2 -314 2999 2876 710 245 54 113 chr9 4157761 4158337 -138113107 + MER34 LTR ERV1 1 542 0 240 287 298 0 chr9 4158423 4158517 -138112927 - MIR SINE MIR -115 147 26 336 194 87 0 chr9 4158863 4158966 -138112478 + MER104 DNA Tc2 6 117 -63 1904 114 13 40 chr9 4161196 4161494 -138109950 + AluSx SINE Alu 1 290 -22 273 171 105 57 chr9 4162598 4162703 -138108741 + LTR41 LTR ERVL 5 114 -659 2821 168 42 32 chr9 4162760 4163375 -138108069 - L1MB7 LINE L1 -42 6142 5522 651 249 37 11 chr9 4163376 4163565 -138107879 - MLT1A2 LTR MaLR 0 374 181 1538 289 53 80 chr9 4163581 4164595 -138106849 - L1M4 LINE L1 -1299 4847 3807 270 0 0 0 chr9 4164595 4164625 -138106819 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1984 122 3 14 chr9 4164632 4164920 -138106524 - AluSc SINE Alu -24 285 1 1538 289 53 80 chr9 4164920 4165583 -138105861 - L1M4 LINE L1 -2345 3801 3209 567 190 50 50 chr9 4165621 4165800 -138105644 + LTR41 LTR ERVL 585 763 -10 323 344 21 91 chr9 4165831 4166261 -138105183 + L2 LINE L2 2533 2932 -382 849 313 56 36 chr9 4166786 4167287 -138104157 - LTR33 LTR ERVL -8 513 3 22 35 0 0 chr9 4167331 4167360 -138104084 + AT_rich Low_complexity Low_complexity 1 29 0 331 213 0 0 chr9 4168080 4168141 -138103303 - L2 LINE L2 -1 3271 3211 316 328 50 0 chr9 4168472 4168591 -138102853 - MIR SINE MIR -108 154 30 192 186 0 47 chr9 4168814 4168857 -138102587 + L2 LINE L2 3229 3269 -3 977 220 113 50 chr9 4169726 4170090 -138101354 + LTR33A LTR ERVL 137 523 0 788 283 75 24 chr9 4170473 4170766 -138100678 - MLT1K LTR MaLR -4 584 277 405 399 0 0 chr9 4170944 4171082 -138100362 + MIR3 SINE MIR 19 156 -52 180 262 0 0 chr9 4171262 4171304 -138100140 + MIR3 SINE MIR 150 191 -17 202 264 43 71 chr9 4172254 4172394 -138099050 - L2 LINE L2 -188 3084 2949 1193 288 48 32 chr9 4172508 4173276 -138098168 + L2 LINE L2 2522 3306 -7 851 244 11 0 chr9 4174872 4175048 -138096396 - MER5A DNA MER1_type -5 184 7 599 250 62 82 chr9 4175289 4175533 -138095911 - MLT1K LTR MaLR -2 586 348 332 371 16 8 chr9 4178020 4178144 -138093300 - MIR SINE MIR -63 145 21 573 197 28 35 chr9 4179382 4179524 -138091920 + MER5B DNA MER1_type 35 175 -3 403 292 78 31 chr9 4179525 4179711 -138091733 + MIR SINE MIR 35 227 -35 1655 149 8 4 chr9 4180001 4180263 -138091181 + AluSx SINE Alu 32 294 -18 22 35 0 0 chr9 4180264 4180293 -138091151 + AT_rich Low_complexity Low_complexity 1 29 0 311 164 0 0 chr9 4180356 4180411 -138091033 - Alu SINE Alu -1 300 246 222 226 24 51 chr9 4180486 4180785 -138090659 + CT-rich Low_complexity Low_complexity 1 290 0 2918 6 0 0 chr9 4180946 4181257 -138090187 + AluY SINE Alu 1 311 0 245 326 57 17 chr9 4181273 4181448 -138089996 - MLT1J LTR MaLR 0 511 330 802 296 93 51 chr9 4181766 4182273 -138089171 - LTR67 LTR ERVL 0 557 30 242 139 0 0 chr9 4182347 4182383 -138089061 - MIR SINE MIR -62 146 111 434 280 70 33 chr9 4182390 4182661 -138088783 + L1MC4a LINE L1 5629 5909 -1899 1708 130 7 29 chr9 4182784 4183061 -138088383 + Tigger5 DNA MER2_type 2052 2322 -1 309 51 0 0 chr9 4183072 4183111 -138088333 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 200 104 32 chr9 4183121 4183246 -138088198 + L1ME4a LINE L1 5985 6118 -3 201 191 0 24 chr9 4184655 4184697 -138086747 + T-rich Low_complexity Low_complexity 2 42 0 699 250 101 48 chr9 4184839 4185087 -138086357 + MIR SINE MIR 2 262 0 180 183 14 42 chr9 4185794 4185805 -138085639 + CT-rich Low_complexity Low_complexity 4 14 -58 1259 225 78 52 chr9 4185805 4186191 -138085253 - MSTD LTR MaLR 0 396 1 180 183 14 42 chr9 4186191 4186250 -138085194 + CT-rich Low_complexity Low_complexity 14 72 0 596 132 9 0 chr9 4186340 4186446 -138084998 + C-rich Low_complexity Low_complexity 5 111 0 2604 86 44 17 chr9 4186886 4187248 -138084196 - THE1C LTR MaLR 0 375 4 10152 98 46 47 chr9 4187251 4188521 -138082923 - THE1C-int LTR MaLR 0 1580 310 2357 127 48 20 chr9 4188521 4188875 -138082569 + THE1B LTR MaLR 1 364 0 12584 93 4 0 chr9 4188875 4190449 -138080995 + THE1B-int LTR MaLR 1 1580 0 2203 145 54 20 chr9 4190449 4190801 -138080643 + THE1B LTR MaLR 1 364 0 10152 98 46 47 chr9 4190801 4191110 -138080334 - THE1C-int LTR MaLR -1267 313 1 2944 96 5 16 chr9 4191112 4191489 -138079955 - THE1C LTR MaLR -2 373 1 266 197 28 155 chr9 4191892 4192034 -138079410 + LTR67 LTR ERVL 434 557 0 2803 136 13 75 chr9 4192968 4193491 -138077953 + L1MB3 LINE L1 5693 6183 0 415 276 104 8 chr9 4193788 4193922 -138077522 - MIR SINE MIR -65 197 51 257 366 67 8 chr9 4195243 4195377 -138076067 + MIR3 SINE MIR 19 160 -48 182 37 37 0 chr9 4196838 4196865 -138074579 + (CAATT)n Simple_repeat Simple_repeat 1 28 0 368 243 54 45 chr9 4196872 4196983 -138074461 - L2 LINE L2 -22 3250 3139 686 184 171 13 chr9 4197754 4197912 -138073532 + MER5A DNA MER1_type 7 189 0 184 195 0 24 chr9 4197912 4197951 -138073493 - MIR SINE MIR -64 198 161 213 277 0 0 chr9 4198182 4198229 -138073215 + (CACG)n Simple_repeat Simple_repeat 1 47 0 183 129 0 0 chr9 4198669 4198700 -138072744 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 183 200 60 60 chr9 4198776 4198826 -138072618 + L2 LINE L2 3222 3271 -1 1257 278 75 63 chr9 4199843 4199986 -138071458 - L1ME3A LINE L1 -144 6262 6122 2020 152 66 23 chr9 4199986 4200335 -138071109 + MER47A DNA MER2_type 2 365 -1 1257 278 75 63 chr9 4200335 4200467 -138070977 - L1ME3A LINE L1 -284 6122 5993 16839 146 35 8 chr9 4200467 4200824 -138070620 + Tigger4(Zombi) DNA MER2_type 1 347 -2384 195 100 0 0 chr9 4200824 4200854 -138070590 + (TTG)n Simple_repeat Simple_repeat 1 30 0 16839 146 35 8 chr9 4200854 4203157 -138068287 + Tigger4(Zombi) DNA MER2_type 347 2731 0 1257 278 75 63 chr9 4203157 4203412 -138068032 - L1ME3A LINE L1 -413 5993 5743 1354 156 138 86 chr9 4203412 4203600 -138067844 - MER2 DNA MER2_type 0 344 129 1691 133 94 0 chr9 4203600 4203877 -138067567 + AluSx SINE Alu 5 305 0 1354 156 138 86 chr9 4203877 4204014 -138067430 - MER2 DNA MER2_type -215 129 1 1257 278 75 63 chr9 4204014 4205320 -138066124 - L1ME3A LINE L1 -663 5743 4402 26 21 0 42 chr9 4205496 4205511 -138065933 + AT_rich Low_complexity Low_complexity 1 15 -31 2524 38 0 0 chr9 4205511 4205801 -138065643 - AluY SINE Alu -21 290 1 26 21 0 42 chr9 4205801 4205833 -138065611 + AT_rich Low_complexity Low_complexity 15 46 0 552 267 74 20 chr9 4205997 4206199 -138065245 + MLT1I LTR MaLR 3 215 -194 518 258 60 56 chr9 4206339 4206914 -138064530 - L1ME3A LINE L1 -3518 2864 2287 344 290 44 47 chr9 4206900 4207497 -138063947 - HAL1b LINE L1 -885 1165 1077 * 236 286 60 23 chr9 4208364 4208497 -138062947 - L1M4 LINE L1 -1978 4168 4031 1227 42 56 0 chr9 4208803 4208947 -138062497 - L1PA8 LINE L1 -14 6158 6007 290 276 81 0 chr9 4210571 4210658 -138060786 - MIR SINE MIR -77 185 92 188 348 73 39 chr9 4211026 4211204 -138060240 + MIR3 SINE MIR 15 198 -10 2861 72 119 5 chr9 4211212 4211614 -138059830 - LTR7 LTR ERV1 -2 448 1 2254 107 62 16 chr9 4211614 4211987 -138059457 - HERVH LTR ERV1 0 7713 7324 1390 134 19 0 chr9 4211987 4212203 -138059241 - HERVH LTR ERV1 -1894 5819 5600 3808 145 2 2 chr9 4212207 4212779 -138058665 - HERVH LTR ERV1 -2567 5146 4575 1334 104 0 0 chr9 4212776 4212959 -138058485 - HERVH LTR ERV1 -3043 4670 4488 * 6451 69 2 2 chr9 4212961 4213815 -138057629 - HERVH LTR ERV1 -3720 3993 3140 * 16169 93 21 24 chr9 4213801 4216676 -138054768 - HERVH LTR ERV1 -4721 2992 1 2638 73 128 5 chr9 4216678 4217077 -138054367 - LTR7 LTR ERV1 -2 448 1 2491 248 65 44 chr9 4217714 4218391 -138053053 - MER115 DNA AcHobo 0 693 3 213 39 0 0 chr9 4218897 4218923 -138052521 + (CA)n Simple_repeat Simple_repeat 2 27 0 360 0 0 0 chr9 4218995 4219035 -138052409 + (TG)n Simple_repeat Simple_repeat 1 40 0 401 306 91 39 chr9 4219348 4219580 -138051864 + LTR16A LTR ERVL 201 444 -6 310 184 0 105 chr9 4219671 4219747 -138051697 + L2 LINE L2 3246 3313 0 2435 162 77 46 chr9 4220264 4220852 -138050592 - L1MB4 LINE L1 -6 6174 5569 528 239 34 0 chr9 4220913 4221030 -138050414 - MER103 DNA DNA -44 122 2 295 239 27 133 chr9 4221205 4221393 -138050051 + L2 LINE L2 2917 3084 -188 371 266 40 102 chr9 4221473 4221650 -138049794 - MER5A DNA MER1_type -12 177 12 203 170 21 0 chr9 4221717 4221764 -138049680 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 185 234 0 0 chr9 4221768 4221815 -138049629 + MIR3 SINE MIR 121 167 -41 1545 176 54 57 chr9 4222782 4223118 -138048326 + MER58B DNA MER1_type 6 340 -1 1035 254 86 84 chr9 4223193 4223751 -138047693 - L1ME3A LINE L1 -75 6095 5537 234 0 0 0 chr9 4223922 4223948 -138047496 + (A)n Simple_repeat Simple_repeat 1 26 0 201 39 0 0 chr9 4224698 4224724 -138046720 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr9 4225232 4225253 -138046191 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 4225625 4225647 -138045797 + AT_rich Low_complexity Low_complexity 1 22 0 367 353 85 34 chr9 4229054 4229465 -138041979 - L2 LINE L2 -338 2976 2545 318 294 105 14 chr9 4230751 4230894 -138040550 + MIR SINE MIR 107 262 0 803 327 55 35 chr9 4231604 4232200 -138039244 + L1ME4a LINE L1 5309 5916 -205 847 192 66 6 chr9 4232301 4232483 -138038961 + MIR SINE MIR 7 199 -63 48 77 0 0 chr9 4232487 4232591 -138038853 + AT_rich Low_complexity Low_complexity 1 104 0 1135 168 73 0 chr9 4234657 4234848 -138036596 + MER3 DNA MER1_type 5 209 0 272 302 16 48 chr9 4235944 4236070 -138035374 + MIR SINE MIR 135 256 -6 376 301 62 0 chr9 4236140 4236253 -138035191 - L2 LINE L2 -34 3279 3160 5001 150 53 15 chr9 4237548 4238395 -138033049 + L1MC1 LINE L1 5449 6327 -6 618 278 0 13 chr9 4238408 4238559 -138032885 + L2 LINE L2 3165 3313 0 343 309 82 31 chr9 4239784 4239978 -138031466 - MIR SINE MIR -6 256 53 194 343 187 6 chr9 4240316 4240482 -138030962 + MIR SINE MIR 49 244 -18 375 245 68 54 chr9 4241633 4241780 -138029664 + MIR SINE MIR 6 154 -108 2042 130 0 0 chr9 4242503 4242788 -138028656 + AluSg SINE Alu 1 285 -25 223 265 163 31 chr9 4242952 4243050 -138028394 + MER5A DNA MER1_type 35 145 -44 238 237 51 17 chr9 4243878 4243937 -138027507 - L2 LINE L2 -3 3310 3250 551 300 119 83 chr9 4245112 4245632 -138025812 + L1MC4a LINE L1 5373 5677 -444 261 182 0 0 chr9 4246022 4246077 -138025367 + (CA)n Simple_repeat Simple_repeat 2 56 0 609 288 79 14 chr9 4246158 4246373 -138025071 + MIR SINE MIR 2 230 -32 284 278 121 10 chr9 4246603 4246716 -138024728 + MIR SINE MIR 28 159 -49 2044 129 0 0 chr9 4247213 4247544 -138023900 + AluSx SINE Alu 1 331 0 2385 92 0 3 chr9 4248530 4248844 -138022600 + AluSq SINE Alu 1 313 0 180 182 0 0 chr9 4249559 4249592 -138021852 - MIR SINE MIR -107 155 123 393 343 9 23 chr9 4249720 4249936 -138021508 + MLT1J LTR MaLR 217 429 -82 2178 119 0 3 chr9 4249937 4250232 -138021212 + AluSx SINE Alu 1 294 -18 280 287 47 62 chr9 4250986 4251284 -138020160 + L2 LINE L2 2785 3078 -194 2109 134 0 7 chr9 4252172 4252477 -138018967 + AluSx SINE Alu 1 303 -9 1735 168 25 14 chr9 4253237 4253522 -138017922 + AluJo SINE Alu 1 288 -24 247 350 121 7 chr9 4253712 4253852 -138017592 - L2 LINE L2 -2 3311 3156 208 331 221 17 chr9 4253848 4254029 -138017415 - MIR SINE MIR -13 249 32 * 399 191 56 0 chr9 4254050 4254139 -138017305 - L1ME4a LINE L1 -65 6056 5963 589 221 61 31 chr9 4254206 4254369 -138017075 - MER104 DNA Tc2 -4 176 9 233 254 111 71 chr9 4254479 4254605 -138016839 + L2 LINE L2 3142 3272 0 2308 86 0 26 chr9 4254852 4255155 -138016289 - AluY SINE Alu -16 295 1 219 339 95 37 chr9 4255791 4255980 -138015464 - L2 LINE L2 -122 3150 2951 459 0 0 0 chr9 4259662 4259713 -138011731 + (CA)n Simple_repeat Simple_repeat 2 52 0 2443 84 7 0 chr9 4260305 4260614 -138010830 + AluY SINE Alu 1 311 0 219 349 18 37 chr9 4260938 4261047 -138010397 + MIR SINE MIR 21 127 -135 508 306 79 24 chr9 4261104 4261356 -138010088 - L2 LINE L2 0 3313 3048 4583 72 19 60 chr9 4261607 4262275 -138009169 + L1PA10 LINE L1 5528 6168 0 324 273 127 11 chr9 4262399 4262517 -138008927 - MIR3 SINE MIR -3 205 73 295 291 87 44 chr9 4266440 4266646 -138004798 - L2 LINE L2 0 3313 3099 976 71 16 0 chr9 4266655 4266781 -138004663 + AluY SINE Alu 165 292 -19 983 275 83 48 chr9 4266805 4267404 -138004040 - L2 LINE L2 -244 3069 2445 215 61 30 0 chr9 4267534 4267567 -138003877 + (TTG)n Simple_repeat Simple_repeat 2 35 0 399 113 0 0 chr9 4268027 4268089 -138003355 + (TG)n Simple_repeat Simple_repeat 1 62 0 476 300 52 67 chr9 4269220 4269430 -138002014 + L2 LINE L2 3030 3236 -36 252 0 0 0 chr9 4269578 4269606 -138001838 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 367 69 49 chr9 4270049 4270354 -138001090 - L2 LINE L2 -47 3225 2915 2086 177 61 34 chr9 4270506 4270735 -138000709 + L1MA4A LINE L1 2729 2950 -3353 2177 134 19 46 chr9 4270735 4271107 -138000337 - THE1B LTR MaLR 0 364 3 12426 98 4 4 chr9 4271109 4272690 -137998754 - THE1B-int LTR MaLR 0 1580 1 1913 150 33 46 chr9 4272692 4273059 -137998385 - THE1B LTR MaLR -2 362 1 2086 177 61 34 chr9 4273059 4273865 -137997579 + L1MA4A LINE L1 2950 6121 -182 462 189 0 27 chr9 4273876 4273987 -137997457 + L1MA4A LINE L1 6195 6302 -1 5099 168 38 15 chr9 4274283 4275126 -137996318 + MER21B LTR ERV1 1 862 -1 1210 237 18 85 chr9 4276414 4276908 -137994536 + L1MC4 LINE L1 7431 7891 -151 558 132 0 41 chr9 4276946 4277067 -137994377 + (GGGA)n Simple_repeat Simple_repeat 4 119 0 280 205 27 98 chr9 4277079 4277191 -137994253 + L1MC4 LINE L1 7939 8042 0 260 267 11 33 chr9 4277222 4277312 -137994132 - MIR SINE MIR -136 126 39 252 321 83 90 chr9 4277800 4278377 -137993067 + L2 LINE L2 2271 2843 -471 356 399 70 38 chr9 4278433 4278774 -137992670 + L2 LINE L2 2916 3267 -5 246 308 66 0 chr9 4282434 4282525 -137988919 - L2 LINE L2 -3 3269 3173 229 239 0 0 chr9 4282630 4282676 -137988768 - LTR16C LTR ERVL -257 234 189 223 245 19 0 chr9 4284878 4284931 -137986513 - MER5A DNA MER1_type -127 62 9 326 300 0 58 chr9 4285052 4285172 -137986272 - MIR SINE MIR -116 146 34 424 220 165 55 chr9 4286212 4286430 -137985014 + MIR SINE MIR 21 262 0 652 234 18 80 chr9 4290024 4290250 -137981194 - MER58C DNA MER1_type 0 215 4 427 291 200 0 chr9 4290889 4291064 -137980380 - MIR SINE MIR -19 243 34 212 0 36 0 chr9 4291111 4291139 -137980305 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr9 4291459 4291486 -137979958 + (GGA)n Simple_repeat Simple_repeat 3 29 0 1641 170 28 28 chr9 4291794 4292082 -137979362 + AluJo SINE Alu 13 300 -12 1127 101 63 0 chr9 4293319 4293478 -137977966 - L1PA13 LINE L1 -10 6153 5985 815 131 12 101 chr9 4294070 4294238 -137977206 + MER5A DNA MER1_type 23 175 -14 2142 110 0 13 chr9 4296747 4297047 -137974397 + AluSx SINE Alu 3 298 -14 27 29 0 0 chr9 4297797 4297831 -137973613 + AT_rich Low_complexity Low_complexity 1 34 0 636 314 131 23 chr9 4300089 4300516 -137970928 - L2 LINE L2 -2 3311 2839 410 257 138 83 chr9 4300561 4301004 -137970440 + L1ME LINE L1 5352 5818 -303 838 227 66 103 chr9 4301189 4301656 -137969788 + LTR7 LTR ERV1 1 450 0 828 251 55 5 chr9 4301678 4301877 -137969567 - MER63A DNA MER1_type -1 209 1 531 161 301 0 chr9 4302949 4303092 -137968352 - MER5A DNA MER1_type -2 187 2 804 248 140 30 chr9 4303941 4304276 -137967168 - L2 LINE L2 0 3313 2942 1707 167 31 97 chr9 4304480 4304905 -137966539 + MLT2C1 LTR ERVL 1 397 0 256 293 240 33 chr9 4305097 4305247 -137966197 - MIR SINE MIR -80 182 2 2273 70 0 63 chr9 4305339 4305654 -137965790 - AluY SINE Alu -16 295 1 956 288 179 39 chr9 4306291 4307004 -137964440 - L2 LINE L2 -239 3074 2247 342 0 0 0 chr9 4307970 4308008 -137963436 + (CA)n Simple_repeat Simple_repeat 2 39 0 580 248 117 9 chr9 4308019 4308233 -137963211 + LTR16A1 LTR ERVL 217 453 -4 402 359 37 23 chr9 4308466 4308683 -137962761 - L3 LINE CR1 -19 1558 1339 219 36 0 0 chr9 4309055 4309083 -137962361 + (T)n Simple_repeat Simple_repeat 1 28 0 830 150 72 7 chr9 4310159 4310312 -137961132 + MER3 DNA MER1_type 4 166 -43 286 265 35 105 chr9 4310347 4310547 -137960897 - L3 LINE CR1 -99 1478 1293 1555 188 7 11 chr9 4310691 4310983 -137960461 - AluJo SINE Alu 0 312 23 389 297 61 12 chr9 4311051 4311216 -137960228 + MIR SINE MIR 76 248 -14 292 309 127 27 chr9 4311214 4311434 -137960010 - L3 LINE CR1 -369 1208 967 * 446 48 0 16 chr9 4311443 4311505 -137959939 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 340 320 0 10 chr9 4311509 4311609 -137959835 - L2 LINE L2 -18 3295 3197 524 316 47 19 chr9 4311968 4312180 -137959264 + MIR SINE MIR 36 253 -9 471 278 78 17 chr9 4312329 4312509 -137958935 + MIR SINE MIR 2 192 -70 185 385 13 0 chr9 4313958 4314036 -137957408 + L2 LINE L2 2992 3070 -202 1747 153 0 68 chr9 4314491 4314817 -137956627 - AluJo SINE Alu -8 304 1 1671 199 130 31 chr9 4318643 4319059 -137952385 + LTR40b LTR ERVL 3 459 -3 353 333 44 7 chr9 4319606 4319741 -137951703 + MIR3 SINE MIR 5 144 -64 * 400 63 11 11 chr9 4319723 4319789 -137951655 - L1PA13 LINE L1 -211 5952 5906 * 1661 99 37 4 chr9 4319760 4320003 -137951441 + L1PA13 LINE L1 5913 6207 0 207 91 45 45 chr9 4320003 4320047 -137951397 + A-rich Low_complexity Low_complexity 3 180 0 2585 56 0 0 chr9 4320351 4320653 -137950791 - AluY SINE Alu -9 302 1 22 0 0 0 chr9 4320960 4320982 -137950462 + AT_rich Low_complexity Low_complexity 1 22 0 251 247 114 63 chr9 4321622 4321780 -137949664 - MIR SINE MIR -19 243 78 327 25 0 0 chr9 4322274 4322314 -137949130 + (CA)n Simple_repeat Simple_repeat 2 41 0 236 350 63 0 chr9 4322445 4322588 -137948856 + L1ME LINE L1 5669 5820 -301 645 327 156 21 chr9 4323036 4323510 -137947934 + L3 LINE CR1 47 584 -993 417 93 0 0 chr9 4324237 4324291 -137947153 + AluS SINE Alu 21 74 -238 2520 163 133 9 chr9 4325762 4325948 -137945496 + MER6A DNA MER2_type 1 163 -702 231 114 0 0 chr9 4325948 4325983 -137945461 + (TG)n Simple_repeat Simple_repeat 1 35 0 2520 163 133 9 chr9 4325983 4326329 -137945115 + MER6A DNA MER2_type 163 599 -6 2329 85 10 3 chr9 4326584 4326891 -137944553 - AluY SINE Alu -2 309 1 183 250 0 0 chr9 4326930 4326982 -137944462 + CT-rich Low_complexity Low_complexity 1 52 0 1934 118 33 26 chr9 4326982 4327286 -137944158 - AluSx SINE Alu -6 306 1 642 275 75 32 chr9 4327323 4327603 -137943841 + L2 LINE L2 3022 3313 0 266 267 33 22 chr9 4327735 4327825 -137943619 - MER103 DNA DNA -68 98 8 456 303 45 26 chr9 4331969 4332124 -137939320 + L3 LINE CR1 1417 1574 -3 1126 125 0 34 chr9 4333543 4333719 -137937725 - AluSq SINE Alu -19 294 125 207 0 0 0 chr9 4334056 4334079 -137937365 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 229 303 0 53 chr9 4334368 4334444 -137937000 - L2 LINE L2 -37 3276 3205 2357 107 3 0 chr9 4334760 4335070 -137936374 - AluSx SINE Alu -1 311 1 22 0 0 0 chr9 4336344 4336366 -137935078 + AT_rich Low_complexity Low_complexity 1 22 0 519 333 75 50 chr9 4339832 4340270 -137931174 + HAL1b LINE L1 236 684 -664 680 193 93 7 chr9 4341299 4341449 -137929995 + MER5A DNA MER1_type 2 164 -25 328 310 124 8 chr9 4341486 4341615 -137929829 + MER91B DNA MER1_type 46 189 -1 207 0 0 0 chr9 4341715 4341738 -137929706 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 739 70 18 26 chr9 4341740 4341854 -137929590 - L1HS LINE L1 -5 6150 6038 22 35 0 0 chr9 4342205 4342234 -137929210 + AT_rich Low_complexity Low_complexity 1 29 0 180 286 27 129 chr9 4343003 4343150 -137928294 + MER5A DNA MER1_type 48 179 -10 * 420 246 179 30 chr9 4343037 4343171 -137928273 - MER5A DNA MER1_type -32 157 4 1290 216 78 35 chr9 4345102 4345500 -137925944 - MSTB2 LTR MaLR 0 457 43 518 298 153 55 chr9 4346277 4346696 -137924748 + L2 LINE L2 2810 3269 -3 232 224 20 0 chr9 4349220 4349269 -137922175 + MIR SINE MIR 212 261 -1 532 219 16 24 chr9 4349302 4349425 -137922019 - MIR SINE MIR -105 157 36 198 294 15 44 chr9 4350032 4350100 -137921344 + L2 LINE L2 3246 3311 -2 1250 307 115 7 chr9 4350279 4351015 -137920429 + L2 LINE L2 2251 3061 -211 35 24 0 0 chr9 4351938 4351980 -137919464 + AT_rich Low_complexity Low_complexity 1 42 0 465 50 0 0 chr9 4352203 4352263 -137919181 + (CA)n Simple_repeat Simple_repeat 2 61 0 265 250 62 0 chr9 4352889 4352953 -137918491 + L2 LINE L2 3179 3246 -26 412 240 10 21 chr9 4353158 4353254 -137918190 - MER5A DNA MER1_type -84 105 11 324 0 0 0 chr9 4354122 4354158 -137917286 + (TC)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chr9 4354157 4354184 -137917260 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 219 152 0 0 chr9 4354195 4354241 -137917203 + (CA)n Simple_repeat Simple_repeat 1 46 0 183 290 120 50 chr9 4354558 4354658 -137916786 - MIR SINE MIR -60 148 42 276 100 0 0 chr9 4356390 4356430 -137915014 + (A)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr9 4356989 4357017 -137914427 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 216 306 88 64 chr9 4358647 4358888 -137912556 - MIR3 SINE MIR -14 248 1 327 355 57 21 chr9 4358932 4359073 -137912371 - L2 LINE L2 -5 3267 3122 1905 168 0 42 chr9 4359411 4359792 -137911652 + MLT1A1 LTR MaLR 1 365 0 459 301 106 17 chr9 4359794 4360030 -137911414 + L2 LINE L2 2699 2955 -359 1506 138 6 114 chr9 4360119 4360230 -137911214 + MLT1B LTR MaLR 69 190 -200 1985 116 53 0 chr9 4360230 4360515 -137910929 + AluSx SINE Alu 1 300 -12 1506 138 6 114 chr9 4360515 4360764 -137910680 + MLT1B LTR MaLR 190 390 0 494 286 79 26 chr9 4360782 4360971 -137910473 + L2 LINE L2 3115 3313 0 1780 173 0 46 chr9 4362283 4362607 -137908837 + AluJo SINE Alu 1 309 -3 181 352 0 70 chr9 4365300 4365371 -137906073 + MIR SINE MIR 32 97 -165 2432 82 3 0 chr9 4365544 4365850 -137905594 - AluSx SINE Alu -1 311 5 258 291 12 47 chr9 4366292 4366378 -137905066 + MER5A DNA MER1_type 6 88 -101 433 262 21 48 chr9 4366439 4366584 -137904860 + L2 LINE L2 3171 3311 -2 2009 78 81 3 chr9 4366874 4367158 -137904286 + AluSx SINE Alu 1 306 -6 620 235 31 15 chr9 4367165 4367361 -137904083 - L1MB7 LINE L1 -10 6174 5976 237 33 0 0 chr9 4367372 4367402 -137904042 + (A)n Simple_repeat Simple_repeat 1 30 0 2282 117 3 0 chr9 4367583 4367891 -137903553 + AluSx SINE Alu 2 310 -2 253 321 6 13 chr9 4367987 4368146 -137903298 + L1MC4a LINE L1 5775 5932 -1876 261 259 74 30 chr9 4369016 4369151 -137902293 - L1ME3A LINE L1 -5 6165 6025 450 165 132 0 chr9 4370920 4371011 -137900433 + MER20 DNA MER1_type 116 218 -1 656 161 0 32 chr9 4371312 4371498 -137899946 + GA-rich Low_complexity Low_complexity 1 180 0 1228 243 118 17 chr9 4373359 4373767 -137897677 - MER77 LTR ERV1 -3 602 154 239 210 170 30 chr9 4373809 4373909 -137897535 - MER77 LTR ERV1 -438 167 54 432 0 0 0 chr9 4377156 4377204 -137894240 + (A)n Simple_repeat Simple_repeat 1 48 0 258 286 97 45 chr9 4378699 4378968 -137892476 - L1ME3A LINE L1 -117 6004 5722 245 260 10 30 chr9 4378973 4379073 -137892371 + (TA)n Simple_repeat Simple_repeat 1 98 0 1010 152 73 0 chr9 4379268 4379459 -137891985 - MER2 DNA MER2_type -134 211 7 288 219 0 14 chr9 4379846 4379919 -137891525 + MIR SINE MIR 61 132 -130 217 231 29 77 chr9 4379888 4379992 -137891452 + L2 LINE L2 2993 3091 -181 * 442 272 76 86 chr9 4380122 4380412 -137891032 - L2 LINE L2 -3 3310 3024 314 239 97 18 chr9 4380673 4380786 -137890658 - MIR3 SINE MIR -76 132 11 186 43 0 0 chr9 4381174 4381197 -137890247 + (TTC)n Simple_repeat Simple_repeat 2 24 0 287 229 324 17 chr9 4381816 4381995 -137889449 + L2 LINE L2 3008 3241 -31 2313 113 25 19 chr9 4383391 4383753 -137887691 + THE1B LTR MaLR 1 364 0 4878 99 4 3 chr9 4383753 4384461 -137886983 + THE1B-int LTR MaLR 1 709 -871 4350 102 16 0 chr9 4384459 4385077 -137886367 + THE1B-int LTR MaLR 953 1580 0 * 2391 125 8 16 chr9 4385077 4385444 -137886000 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr9 4385495 4385521 -137885923 + AT_rich Low_complexity Low_complexity 1 26 0 1732 164 7 18 chr9 4385522 4385808 -137885636 - AluJb SINE Alu -29 283 1 3230 195 52 46 chr9 4386988 4387780 -137883664 + L1MD2 LINE L1 653 1439 -4967 2302 107 16 0 chr9 4387780 4388088 -137883356 + AluSq SINE Alu 1 313 0 3230 195 52 46 chr9 4388088 4388330 -137883114 + L1MD2 LINE L1 1439 1678 -4728 580 144 18 0 chr9 4388330 4388441 -137883003 - L1MA9 LINE L1 -4 6308 6196 3230 195 52 46 chr9 4388441 4388723 -137882721 + L1MD2 LINE L1 1678 1949 -4457 4378 202 50 13 chr9 4388880 4390420 -137881024 + L1MD2 LINE L1 5009 6595 -24 2562 59 0 0 chr9 4392044 4392350 -137879094 - AluY SINE Alu -5 306 1 216 91 23 45 chr9 4393830 4393874 -137877570 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 333 268 89 8 chr9 4394027 4394150 -137877294 - L1ME4a LINE L1 -241 5880 5748 760 212 118 6 chr9 4394321 4394491 -137876953 - MER5A DNA MER1_type 0 189 1 269 106 64 0 chr9 4394512 4394559 -137876885 + U5 snRNA snRNA 1 50 -66 812 308 68 51 chr9 4395109 4396337 -137875107 + L1MDa LINE L1 4 1252 -4867 380 338 125 10 chr9 4396374 4396710 -137874734 + L1MDa LINE L1 1407 1691 -863 652 307 92 10 chr9 4396886 4397397 -137874047 + L1ME3A LINE L1 2958 3510 -2636 2218 71 7 24 chr9 4397426 4397721 -137873723 + AluSp SINE Alu 1 290 -23 266 0 0 29 chr9 4397726 4397761 -137873683 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 317 258 207 35 chr9 4397861 4398319 -137873125 + L1ME3A LINE L1 3712 4248 -1898 1898 295 82 45 chr9 4398380 4399782 -137871662 - L1MC4a LINE L1 -864 6944 5491 543 286 52 44 chr9 4399799 4400317 -137871127 + L1ME3A LINE L1 4325 4846 -1300 438 289 35 39 chr9 4400341 4400653 -137870791 + L1ME3A LINE L1 5647 5957 -213 22 70 0 0 chr9 4400834 4400877 -137870567 + AT_rich Low_complexity Low_complexity 1 43 0 364 348 166 7 chr9 4400967 4401378 -137870066 + L2 LINE L2 2722 3186 -86 247 370 65 0 chr9 4401387 4401495 -137869949 - L2 LINE L2 -9 3263 3149 2131 166 67 34 chr9 4402319 4402796 -137868648 + MLT1D LTR MaLR 13 505 0 260 263 77 72 chr9 4403068 4403262 -137868182 + MLT1L LTR MaLR 197 391 -224 854 137 0 0 chr9 4403458 4403575 -137867869 + FLAM_C SINE Alu 1 117 -16 248 378 96 22 chr9 4404369 4404504 -137866940 - L2 LINE L2 -12 3260 3116 236 238 188 20 chr9 4405089 4405190 -137866254 - MIR SINE MIR -7 255 138 309 232 49 0 chr9 4405574 4405656 -137865788 + L1MC/D LINE L1 5567 5652 -469 294 273 10 20 chr9 4405684 4405783 -137865661 + (CATA)n Simple_repeat Simple_repeat 1 98 0 846 255 48 0 chr9 4405799 4406007 -137865437 + MIR SINE MIR 2 219 -43 267 210 86 25 chr9 4406057 4406138 -137865306 + L1MC/D LINE L1 5712 5797 -2011 225 0 0 0 chr9 4406665 4406690 -137864754 + (A)n Simple_repeat Simple_repeat 1 25 0 375 332 93 21 chr9 4406927 4407120 -137864324 - MIR SINE MIR -36 226 20 527 303 40 34 chr9 4409143 4409318 -137862126 - MIR3 SINE MIR -21 187 12 520 188 255 0 chr9 4410341 4410490 -137860954 - MER20 DNA MER1_type -2 217 31 732 301 35 13 chr9 4410547 4410776 -137860668 + MIR SINE MIR 9 242 -20 237 310 41 47 chr9 4410801 4410972 -137860472 + MLT2E LTR ERVL 41 210 -418 192 269 39 39 chr9 4411644 4411722 -137859722 - L2 LINE L2 -52 3220 3143 217 364 50 8 chr9 4412532 4412653 -137858791 + L2 LINE L2 3146 3271 -1 2196 119 0 0 chr9 4413120 4413415 -137858029 - AluSq SINE Alu 0 313 19 187 265 0 20 chr9 4413903 4413952 -137857492 + L2 LINE L2 3213 3260 -12 204 264 0 83 chr9 4414256 4414328 -137857116 + MER91A DNA MER1_type 2 67 -129 1762 193 32 10 chr9 4414715 4415115 -137856329 + MLT1C LTR MaLR 59 467 0 353 284 9 18 chr9 4415115 4415224 -137856220 - MIR3 SINE MIR -42 166 59 331 271 148 63 chr9 4415250 4415534 -137855910 - L2 LINE L2 -1 3312 3005 2356 101 0 3 chr9 4415966 4416273 -137855171 + AluSx SINE Alu 1 306 -6 212 147 0 0 chr9 4418503 4418537 -137852907 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 203 263 11 63 chr9 4419643 4419738 -137851706 - MIR SINE MIR -133 129 40 805 239 73 121 chr9 4419820 4420081 -137851363 - L2 LINE L2 -6 3307 3078 1540 167 21 76 chr9 4420081 4420411 -137851033 - AluJo SINE Alu 0 312 1 805 239 73 121 chr9 4420411 4420630 -137850814 - L2 LINE L2 -235 3078 2850 293 0 27 0 chr9 4420649 4420686 -137850758 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 294 73 0 0 chr9 4421510 4421551 -137849893 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 448 290 27 39 chr9 4422450 4422641 -137848803 - MIR SINE MIR -25 237 46 2020 224 50 32 chr9 4422879 4423445 -137847999 + L1ME1 LINE L1 5584 6159 -7 25 31 0 0 chr9 4423507 4423539 -137847905 + AT_rich Low_complexity Low_complexity 1 32 0 339 222 81 40 chr9 4424148 4424247 -137847197 + MER5C DNA MER1_type 21 123 -201 240 192 0 0 chr9 4424391 4424443 -137847001 + MER5C DNA MER1_type 270 321 -3 387 316 121 16 chr9 4425115 4425305 -137846139 + L2 LINE L2 3016 3225 -47 2161 108 7 10 chr9 4425327 4425633 -137845811 + AluSx SINE Alu 1 305 -7 2099 121 0 0 chr9 4425741 4426046 -137845398 - AluSc SINE Alu -4 305 1 189 0 0 0 chr9 4426888 4426909 -137844535 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 321 292 186 6 chr9 4427177 4427338 -137844106 - MIR SINE MIR -48 214 25 204 40 0 0 chr9 4427364 4427389 -137844055 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 494 273 74 51 chr9 4428495 4428711 -137842733 + MIR SINE MIR 28 248 -14 652 232 82 1 chr9 4428857 4429072 -137842372 - L1ME3A LINE L1 -7 6155 5929 7132 109 34 9 chr9 4429681 4431074 -137840370 - L1MA1 LINE L1 -4 6298 4863 4186 168 42 9 chr9 4431259 4432022 -137839422 + L1MB5 LINE L1 5386 6173 -1 40 37 0 0 chr9 4432798 4432852 -137838592 + AT_rich Low_complexity Low_complexity 1 54 0 2408 70 3 3 chr9 4433213 4433513 -137837931 - AluY SINE Alu -11 300 1 324 366 41 0 chr9 4433514 4433637 -137837807 - MER115 DNA AcHobo -175 518 391 740 345 9 4 chr9 4433686 4433915 -137837529 - MER115 DNA AcHobo -413 280 51 425 264 28 9 chr9 4433920 4434026 -137837418 + MER5A DNA MER1_type 7 114 -75 234 0 0 0 chr9 4434225 4434251 -137837193 + (A)n Simple_repeat Simple_repeat 1 26 0 1347 201 30 30 chr9 4434322 4434590 -137836854 + AluJb SINE Alu 23 290 -22 451 311 122 31 chr9 4435488 4435710 -137835734 - MIR SINE MIR -20 242 1 313 307 62 22 chr9 4437345 4437524 -137833920 + MIR SINE MIR 21 206 -56 710 285 60 4 chr9 4437596 4437828 -137833616 + MIR SINE MIR 2 252 -10 347 0 23 0 chr9 4437902 4437945 -137833499 + (CA)n Simple_repeat Simple_repeat 1 44 0 475 328 39 6 chr9 4439866 4440046 -137831398 - MIR3 SINE MIR -3 205 20 598 209 99 41 chr9 4441218 4441390 -137830054 + MER5A DNA MER1_type 1 182 -7 249 151 19 38 chr9 4441500 4441553 -137829891 - MER5B DNA MER1_type 0 178 127 630 233 5 87 chr9 4441554 4441760 -137829684 + MER20 DNA MER1_type 31 219 0 2808 139 90 25 chr9 4441988 4442512 -137828932 + LTR64 LTR ERVK 1 558 0 2084 103 3 14 chr9 4445706 4445997 -137825447 - AluSg SINE Alu -22 288 1 1284 335 159 23 chr9 4446172 4447290 -137824154 + L3 LINE CR1 105 1374 -203 2151 148 56 8 chr9 4447381 4447739 -137823705 + THE1C LTR MaLR 1 375 0 234 349 70 0 chr9 4447948 4448034 -137823410 - L2 LINE L2 -48 3224 3133 7676 52 1 0 chr9 4449970 4450970 -137820474 + L1PA6 LINE L1 5161 6154 0 3259 177 39 16 chr9 4452678 4453294 -137818150 - L1MB5 LINE L1 0 6174 5545 1868 163 7 3 chr9 4453315 4453609 -137817835 - AluSx SINE Alu -17 295 1 455 232 20 0 chr9 4453856 4453955 -137817489 + L2 LINE L2 3141 3241 -31 22 0 0 0 chr9 4454064 4454086 -137817358 + AT_rich Low_complexity Low_complexity 1 22 0 287 321 47 0 chr9 4454571 4454677 -137816767 + L2 LINE L2 3188 3298 -15 210 262 24 24 chr9 4456942 4457026 -137814418 + GA-rich Low_complexity Low_complexity 1 84 0 570 221 15 113 chr9 4457205 4457400 -137814044 - MER91B DNA MER1_type -14 176 1 904 230 6 11 chr9 4457530 4457708 -137813736 + MER45A DNA AcHobo 1 177 -1 896 269 114 21 chr9 4458820 4459063 -137812381 - L1MCc LINE L1 -4887 1536 1242 2345 87 0 7 chr9 4459063 4459372 -137812072 + AluY SINE Alu 5 311 0 896 269 114 21 chr9 4459372 4459515 -137811929 - L1MCc LINE L1 -5181 1242 1114 318 288 154 34 chr9 4459913 4460165 -137811279 - L1MCc LINE L1 -5994 429 209 234 0 0 0 chr9 4460165 4460191 -137811253 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 411 21 0 0 chr9 4460190 4460238 -137811206 + (GA)n Simple_repeat Simple_repeat 1 48 0 318 288 154 34 chr9 4460191 4460336 -137811108 - L1MCc LINE L1 -6214 209 37 351 0 0 0 chr9 4461380 4461419 -137810025 + (TG)n Simple_repeat Simple_repeat 2 40 0 220 402 0 8 chr9 4462099 4462216 -137809228 + MIR3 SINE MIR 77 192 -16 380 214 87 8 chr9 4462281 4462407 -137809037 + MER117 DNA MER1_type 47 182 -15 590 228 142 14 chr9 4463993 4464312 -137807132 - MLT1J2 LTR MaLR 0 450 60 1579 187 33 19 chr9 4464983 4465347 -137806097 + MER96B DNA MER1_type? 49 417 0 371 256 13 0 chr9 4465351 4465429 -137806015 + L2 LINE L2 3194 3272 0 201 74 0 0 chr9 4465880 4465907 -137805537 + (T)n Simple_repeat Simple_repeat 1 27 0 202 330 121 0 chr9 4466301 4466392 -137805052 + MIR SINE MIR 59 160 -102 194 392 21 10 chr9 4467474 4467571 -137803873 - L3 LINE CR1 -45 1532 1435 616 182 224 16 chr9 4467573 4468079 -137803365 - LTR50 LTR ERVL -2 793 12 361 291 99 7 chr9 4468169 4468320 -137803124 - L3 LINE CR1 -321 1256 1092 423 291 70 62 chr9 4468324 4468587 -137802857 + L1ME4a LINE L1 5573 5843 -278 1654 183 0 7 chr9 4468587 4468877 -137802567 - AluJb SINE Alu -24 288 1 423 291 70 62 chr9 4468877 4469125 -137802319 + L1ME4a LINE L1 5843 6088 -33 342 345 63 17 chr9 4469244 4469418 -137802026 - L3 LINE CR1 -503 1074 893 365 271 7 45 chr9 4469492 4469508 -137801936 - L1MA10 LINE L1 -1 6333 6318 1683 222 19 60 chr9 4469508 4470021 -137801423 - L1ME2 LINE L1 -10 6154 5663 2075 83 3 31 chr9 4470052 4470365 -137801079 - AluY SINE Alu 0 305 1 736 185 37 0 chr9 4470401 4470536 -137800908 - L1MA10 LINE L1 -15 6319 6180 185 0 40 0 chr9 4470536 4470561 -137800883 + (TTG)n Simple_repeat Simple_repeat 2 27 0 269 313 37 37 chr9 4470670 4470804 -137800640 + MIR3 SINE MIR 66 199 -9 377 204 82 61 chr9 4471770 4471917 -137799527 - MIR SINE MIR -10 252 103 334 320 79 28 chr9 4472189 4472367 -137799077 + MER5A DNA MER1_type 2 188 -1 190 222 111 16 chr9 4472944 4473007 -137798437 + L3 LINE CR1 305 373 -1204 205 171 0 24 chr9 4475026 4475067 -137796377 + (CA)n Simple_repeat Simple_repeat 2 41 0 273 197 0 0 chr9 4475105 4475171 -137796273 + (CA)n Simple_repeat Simple_repeat 1 66 0 298 281 39 55 chr9 4476603 4476731 -137794713 + MIR3 SINE MIR 73 198 -10 216 97 0 0 chr9 4476794 4476825 -137794619 + (CA)n Simple_repeat Simple_repeat 2 32 0 324 286 71 42 chr9 4477512 4477823 -137793621 - HAL1b LINE L1 -630 718 399 304 203 63 0 chr9 4478256 4478335 -137793109 - LTR50 LTR ERVL 0 795 712 25 65 0 0 chr9 4478336 4478382 -137793062 + AT_rich Low_complexity Low_complexity 1 46 0 21 95 0 0 chr9 4478389 4478452 -137792992 + AT_rich Low_complexity Low_complexity 1 63 0 596 252 5 48 chr9 4478843 4479049 -137792395 - LTR41 LTR ERVL -576 197 1 309 345 81 43 chr9 4480552 4480761 -137790683 - L3 LINE CR1 -1313 264 48 1300 132 10 29 chr9 4480897 4481101 -137790343 - AluSx SINE Alu -69 243 44 442 325 101 38 chr9 4481240 4481606 -137789838 - L1 LINE L1 -968 5178 4790 268 277 18 9 chr9 4482134 4482246 -137789198 - L1 LINE L1 -2238 3908 3796 2370 89 0 7 chr9 4482703 4483006 -137788438 - AluY SINE Alu -10 301 1 418 252 49 34 chr9 4483017 4483209 -137788235 - MIR SINE MIR -57 205 17 1948 58 8 0 chr9 4484174 4484435 -137787009 + L1PA5 LINE L1 5739 6001 -153 318 139 0 0 chr9 4484435 4484507 -137786937 + (A)n Simple_repeat Simple_repeat 1 72 0 320 272 40 24 chr9 4484516 4484641 -137786803 + L1M4 LINE L1 3073 3199 -2947 205 286 0 0 chr9 4484730 4484800 -137786644 + C-rich Low_complexity Low_complexity 1 70 0 210 37 0 0 chr9 4484829 4484856 -137786588 + (C)n Simple_repeat Simple_repeat 1 27 0 231 103 73 0 chr9 4484856 4484924 -137786520 + A-rich Low_complexity Low_complexity 3 75 0 2258 139 38 12 chr9 4485708 4486125 -137785319 + MSTA LTR MaLR 1 428 0 373 327 108 75 chr9 4486292 4486653 -137784791 + L2 LINE L2 2900 3272 0 201 222 19 19 chr9 4488269 4488323 -137783121 + GA-rich Low_complexity Low_complexity 1 54 0 204 303 40 61 chr9 4488398 4488497 -137782947 + L2 LINE L2 3168 3264 -8 303 319 42 25 chr9 4488745 4488864 -137782580 - L2 LINE L2 -4 3309 3189 24 0 0 0 chr9 4489603 4489627 -137781817 + AT_rich Low_complexity Low_complexity 1 24 0 1516 166 69 42 chr9 4489681 4489970 -137781474 + AluJo SINE Alu 1 297 -15 23 0 0 0 chr9 4490589 4490612 -137780832 + AT_rich Low_complexity Low_complexity 1 23 0 204 296 0 42 chr9 4490745 4490816 -137780628 + MIR SINE MIR 14 81 -181 566 274 121 21 chr9 4491018 4491208 -137780236 + MIR SINE MIR 4 212 -50 1717 172 0 40 chr9 4491210 4491512 -137779932 + AluJo SINE Alu 1 290 -22 21 36 0 0 chr9 4491583 4491611 -137779833 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr9 4491650 4491685 -137779759 + (CA)n Simple_repeat Simple_repeat 2 36 0 395 169 96 0 chr9 4491705 4491788 -137779656 - Tigger3b DNA MER2_type 0 1231 1141 973 98 93 27 chr9 4491797 4491980 -137779464 + THE1C LTR MaLR 181 375 0 * 5083 132 56 33 chr9 4491980 4492290 -137779154 - Tigger3b DNA MER2_type -2008 1020 719 2062 84 0 4 chr9 4492290 4492551 -137778893 - AluY SINE Alu -13 298 39 5083 132 56 33 chr9 4492551 4493237 -137778207 - Tigger3b DNA MER2_type -2309 719 1 831 172 28 0 chr9 4493249 4493394 -137778050 - MIR SINE MIR -112 150 2 24 32 0 0 chr9 4493911 4493942 -137777502 + AT_rich Low_complexity Low_complexity 1 31 0 311 282 26 43 chr9 4494373 4494490 -137776954 + L1ME LINE L1 5448 5562 -559 2281 79 9 3 chr9 4495030 4495360 -137776084 - L1MA5A LINE L1 0 6297 5966 485 284 102 49 chr9 4495889 4496114 -137775330 - MIR SINE MIR -6 256 20 1938 142 0 0 chr9 4496867 4497176 -137774268 + AluSx SINE Alu 1 309 0 1675 153 63 137 chr9 4499288 4499792 -137771652 - MLT1C LTR MaLR 0 467 1 293 211 9 114 chr9 4500076 4500190 -137771254 + MIR SINE MIR 90 191 -71 294 294 104 51 chr9 4501200 4501405 -137770039 + MIR SINE MIR 9 212 -50 871 225 18 31 chr9 4502581 4502803 -137768641 + MER20 DNA MER1_type 1 219 0 25 0 0 0 chr9 4502836 4502861 -137768583 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 4503365 4503386 -137768058 + AT_rich Low_complexity Low_complexity 1 21 0 1737 244 175 38 chr9 4504117 4504962 -137766482 + L2 LINE L2 2064 3022 -291 632 222 26 31 chr9 4507377 4507571 -137763873 + MLT1J2 LTR MaLR 1 193 -257 230 239 256 26 chr9 4507598 4507715 -137763729 + MLT1J2 LTR MaLR 266 409 -41 287 196 0 72 chr9 4507986 4508083 -137763361 - L1MC5 LINE L1 -30 7931 7842 390 325 149 48 chr9 4509862 4510277 -137761167 + L2 LINE L2 2816 3272 0 330 294 71 8 chr9 4510320 4510446 -137760998 - MER94 DNA DNA 0 134 1 21 36 0 0 chr9 4512020 4512048 -137759396 + AT_rich Low_complexity Low_complexity 1 28 0 556 194 276 0 chr9 4512616 4512750 -137758694 + MER5B DNA MER1_type 6 176 -2 402 328 67 36 chr9 4513214 4513680 -137757764 - L1ME3 LINE L1 -238 5924 5445 358 308 122 65 chr9 4518103 4518626 -137752818 - L1M2 LINE L1 -5481 1368 816 198 286 36 36 chr9 4519391 4519447 -137751997 - L2 LINE L2 -12 3260 3205 193 349 45 0 chr9 4521513 4521579 -137749865 + L2 LINE L2 3235 3303 -10 378 0 0 0 chr9 4521758 4521800 -137749644 + (CA)n Simple_repeat Simple_repeat 2 43 0 648 266 87 57 chr9 4523325 4523674 -137747770 + L1ME4a LINE L1 5415 5752 -369 24 0 0 0 chr9 4523674 4523698 -137747746 + AT_rich Low_complexity Low_complexity 1 24 0 648 266 87 57 chr9 4523698 4524016 -137747428 + L1ME4a LINE L1 5752 6119 -2 223 260 117 0 chr9 4524930 4525007 -137746437 - MIR SINE MIR -66 142 57 234 105 0 0 chr9 4525755 4525793 -137745651 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 4526334 4526362 -137745082 + AT_rich Low_complexity Low_complexity 1 28 0 206 300 29 0 chr9 4527330 4527400 -137744044 - MIR SINE MIR -79 129 58 459 218 143 0 chr9 4528077 4528224 -137743220 - MER104 DNA Tc2 -3 177 10 344 311 0 30 chr9 4528267 4528402 -137743042 + L2 LINE L2 2936 3066 -206 263 261 148 106 chr9 4529328 4529470 -137741974 + MIR SINE MIR 2 149 -113 2562 116 57 7 chr9 4529485 4529892 -137741552 + MSTA LTR MaLR 1 427 -1 8671 166 23 4 chr9 4529894 4531495 -137739949 + MSTA-int LTR MaLR 15 1645 -6 2432 142 54 5 chr9 4531500 4531908 -137739536 + MSTA LTR MaLR 1 428 0 285 307 59 50 chr9 4531908 4532009 -137739435 + MIR SINE MIR 161 262 0 23 0 0 0 chr9 4532180 4532203 -137739241 + AT_rich Low_complexity Low_complexity 1 23 0 240 320 68 19 chr9 4532708 4532811 -137738633 - L2 LINE L2 -24 3248 3141 279 213 12 25 chr9 4532858 4532938 -137738506 - MER116 DNA Mariner -1 79 1 654 214 26 7 chr9 4532979 4533133 -137738311 + MIR SINE MIR 50 206 -56 362 214 401 6 chr9 4533309 4533491 -137737953 - L1MC4 LINE L1 -146 7896 7643 777 190 107 19 chr9 4533626 4533831 -137737613 + MIR SINE MIR 13 235 -27 450 0 0 0 chr9 4533963 4534013 -137737431 + (CA)n Simple_repeat Simple_repeat 2 51 0 278 250 48 73 chr9 4534569 4534728 -137736716 + MIR SINE MIR 49 212 -50 23 0 0 0 chr9 4535357 4535380 -137736064 + AT_rich Low_complexity Low_complexity 1 23 0 324 261 26 17 chr9 4536554 4536669 -137734775 + MER103 DNA DNA 4 119 -47 262 225 31 132 chr9 4536977 4537106 -137734338 - MER5B DNA MER1_type 0 178 63 846 238 8 10 chr9 4538734 4538964 -137732480 + MIR SINE MIR 20 247 -15 195 237 0 0 chr9 4539435 4539473 -137731971 + L2 LINE L2 3231 3268 -4 1678 138 43 72 chr9 4539735 4540082 -137731362 - MER1B DNA MER1_type 0 337 1 1593 165 0 0 chr9 4540237 4540491 -137730953 + AluJb SINE Alu 59 312 0 2300 99 0 3 chr9 4540934 4541237 -137730207 - AluSq SINE Alu -11 302 1 21 0 0 0 chr9 4542780 4542801 -137728643 + AT_rich Low_complexity Low_complexity 1 21 0 2068 150 23 51 chr9 4543210 4543370 -137728074 - L1MA9 LINE L1 0 6312 6149 180 77 0 0 chr9 4543370 4543396 -137728048 + (TG)n Simple_repeat Simple_repeat 2 27 0 2068 150 23 51 chr9 4543396 4543422 -137728022 - L1MA9 LINE L1 -163 6149 6124 2489 75 7 0 chr9 4543422 4543729 -137727715 + AluSx SINE Alu 1 309 -3 2068 150 23 51 chr9 4543729 4543974 -137727470 - L1MA9 LINE L1 -188 6124 5892 197 226 28 19 chr9 4545821 4545927 -137725517 + CT-rich Low_complexity Low_complexity 2 108 0 22 0 0 0 chr9 4547953 4547975 -137723469 + AT_rich Low_complexity Low_complexity 1 22 0 215 275 52 136 chr9 4548359 4548785 -137722659 + L2 LINE L2 2859 3248 -24 201 156 0 0 chr9 4549239 4549271 -137722173 + (CTA)n Simple_repeat Simple_repeat 1 32 0 327 285 85 15 chr9 4549331 4549461 -137721983 - MIR SINE MIR -14 248 110 180 111 0 0 chr9 4549988 4550015 -137721429 + (ATG)n Simple_repeat Simple_repeat 2 28 0 185 250 0 0 chr9 4550641 4550685 -137720759 + L2 LINE L2 3212 3255 -17 620 270 55 0 chr9 4550837 4551000 -137720444 - MIR3 SINE MIR -3 205 34 225 269 224 13 chr9 4552344 4552500 -137718944 + L3 LINE CR1 1370 1558 -19 352 288 54 18 chr9 4552627 4552738 -137718706 + MIR3 SINE MIR 83 197 -11 388 275 231 16 chr9 4552790 4553087 -137718357 + L1ME4a LINE L1 4224 4596 -1550 868 200 41 45 chr9 4553087 4553307 -137718137 - MER20 DNA MER1_type 0 219 1 388 275 231 16 chr9 4553307 4553329 -137718115 + L1ME4a LINE L1 4596 4612 -1534 2097 133 0 0 chr9 4553419 4553705 -137717739 + AluSx SINE Alu 1 286 -26 934 276 100 39 chr9 4553927 4554488 -137716956 - MLT1G1 LTR MaLR 0 595 1 308 292 118 6 chr9 4554592 4554753 -137716691 + L1ME4a LINE L1 5120 5298 -848 289 257 62 35 chr9 4555027 4555171 -137716273 + L1ME4a LINE L1 5764 5911 -210 817 185 21 48 chr9 4555845 4556034 -137715410 - MER5A DNA MER1_type -5 184 1 181 415 0 12 chr9 4556554 4556636 -137714808 - L2 LINE L2 -2 3270 3190 787 189 7 7 chr9 4556993 4557136 -137714308 + MER5A DNA MER1_type 1 143 -46 529 337 71 68 chr9 4558827 4559237 -137712207 - L2 LINE L2 -65 3248 2838 224 297 127 34 chr9 4559256 4559374 -137712070 + L2 LINE L2 3140 3268 -4 2308 122 0 0 chr9 4559574 4559885 -137711559 + AluSx SINE Alu 1 311 -1 1435 156 30 117 chr9 4561099 4561432 -137710012 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 4561434 4561462 -137709982 + AT_rich Low_complexity Low_complexity 1 28 0 1305 193 18 115 chr9 4561714 4561813 -137709631 - MLT1C LTR MaLR 0 467 360 2059 110 10 36 chr9 4561813 4562121 -137709323 - AluSx SINE Alu -10 302 3 1305 193 18 115 chr9 4562121 4562504 -137708940 - MLT1C LTR MaLR -107 360 18 2167 89 26 13 chr9 4562715 4563019 -137708425 + AluY SINE Alu 1 308 -3 260 328 117 16 chr9 4563202 4563330 -137708114 - MIR3 SINE MIR -32 176 36 279 133 0 0 chr9 4563382 4563427 -137708017 + (CA)n Simple_repeat Simple_repeat 1 45 0 400 335 90 13 chr9 4563486 4563641 -137707803 - MIR3 SINE MIR -12 196 30 434 347 78 25 chr9 4563706 4563948 -137707496 + MIR SINE MIR 2 256 -6 2368 95 0 0 chr9 4565296 4565601 -137705843 + AluSq SINE Alu 1 305 -8 323 297 124 59 chr9 4565815 4566105 -137705339 - L2 LINE L2 -961 2353 2045 520 320 117 17 chr9 4566125 4566356 -137705088 + MIR SINE MIR 8 261 -1 256 316 175 18 chr9 4566641 4566812 -137704632 + MIR3 SINE MIR 4 201 -7 287 258 174 45 chr9 4567224 4567356 -137704088 - MIR3 SINE MIR -30 178 30 230 268 73 12 chr9 4567530 4567612 -137703832 - MIR SINE MIR -13 249 163 375 306 54 0 chr9 4567619 4567730 -137703714 + L2 LINE L2 3153 3269 -3 255 333 8 58 chr9 4567734 4567854 -137703590 - MIR SINE MIR -121 141 28 282 95 0 0 chr9 4568316 4568358 -137703086 + (CA)n Simple_repeat Simple_repeat 2 43 0 272 309 0 24 chr9 4569548 4569632 -137701812 + MIR SINE MIR 17 98 -110 1349 187 50 39 chr9 4569651 4570010 -137701434 + L1MC4 LINE L1 7680 8042 0 218 136 45 0 chr9 4572734 4572778 -137698666 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 446 300 17 11 chr9 4573034 4573214 -137698230 - Charlie8 DNA MER1_type -2215 202 22 369 0 0 0 chr9 4573699 4573740 -137697704 + (CA)n Simple_repeat Simple_repeat 2 42 0 918 176 31 6 chr9 4573748 4573907 -137697537 - AluJb SINE Alu -21 291 129 267 103 0 0 chr9 4574051 4574090 -137697354 + (CA)n Simple_repeat Simple_repeat 2 40 0 497 303 85 0 chr9 4575929 4576094 -137695350 - MIR SINE MIR -37 225 47 378 268 72 14 chr9 4576356 4576494 -137694950 - L1ME4a LINE L1 -12 6109 5964 269 303 0 91 chr9 4576643 4576754 -137694690 - L1ME4a LINE L1 -344 5777 5686 2147 137 0 0 chr9 4576754 4577061 -137694383 - AluSq SINE Alu -6 307 1 269 303 0 91 chr9 4577061 4577124 -137694320 - L1ME4a LINE L1 -435 5686 5619 396 0 0 0 chr9 4577268 4577312 -137694132 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 190 293 207 0 chr9 4577481 4577539 -137693905 + MIR SINE MIR 37 106 -102 30 0 0 0 chr9 4579007 4579037 -137692407 + AT_rich Low_complexity Low_complexity 1 30 0 326 220 230 0 chr9 4579560 4579660 -137691784 - MER94 DNA DNA -3 131 9 2318 95 0 0 chr9 4579765 4580060 -137691384 + AluSx SINE Alu 1 295 -17 268 251 137 69 chr9 4580511 4580686 -137690758 + MIR SINE MIR 65 251 -11 245 219 114 49 chr9 4581629 4581752 -137689692 + LTR67 LTR ERVL 2 132 -425 * 404 259 126 74 chr9 4581745 4582158 -137689286 + MLT1H LTR MaLR 52 547 -2 274 170 0 21 chr9 4582410 4582457 -137688987 + Charlie8 DNA MER1_type 231 276 -2141 229 158 0 26 chr9 4582848 4582886 -137688558 - MLT1F LTR MaLR -504 38 2 228 279 14 40 chr9 4583019 4583107 -137688337 - MIR SINE MIR -55 153 68 245 333 130 25 chr9 4583222 4583384 -137688060 + L3 LINE CR1 1204 1382 -195 389 288 68 8 chr9 4583672 4583804 -137687640 + MIR3 SINE MIR 49 188 -20 1886 226 51 31 chr9 4585099 4585599 -137685845 - L1ME1 LINE L1 -5 6161 5651 342 256 0 43 chr9 4585692 4585809 -137685635 - LTR33 LTR ERVL 0 521 410 547 333 0 6 chr9 4585893 4586073 -137685371 - LTR33 LTR ERVL -307 214 36 27380 32 3 1 chr9 4586142 4590036 -137681408 - L1PA3 LINE L1 -3 6152 2247 11270 48 1 1 chr9 4590037 4591421 -137680023 + L1PA3 LINE L1 854 2237 -3909 388 157 43 0 chr9 4591423 4591493 -137679951 + HsTC2 DNA Tc2 1823 1895 -3 31 0 0 0 chr9 4592005 4592036 -137679408 + AT_rich Low_complexity Low_complexity 1 31 0 207 114 0 0 chr9 4592757 4592792 -137678652 + (CATG)n Simple_repeat Simple_repeat 2 36 0 186 250 0 0 chr9 4592946 4593002 -137678442 + A-rich Low_complexity Low_complexity 1 56 0 423 346 118 36 chr9 4593009 4593291 -137678153 - L2 LINE L2 -340 2974 2717 1460 192 96 16 chr9 4593291 4593603 -137677841 + MER58B DNA MER1_type 5 341 0 423 346 118 36 chr9 4593603 4593877 -137677567 - L2 LINE L2 -597 2717 2372 511 309 22 45 chr9 4593958 4594181 -137677263 + Tigger8 DNA MER2_type 46 263 -403 207 0 0 0 chr9 4594182 4594205 -137677239 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2124 95 3 11 chr9 4594213 4594497 -137676947 - AluSx SINE Alu -30 282 1 21 0 0 0 chr9 4594585 4594606 -137676838 + AT_rich Low_complexity Low_complexity 1 21 0 3925 156 2 2 chr9 4594655 4595265 -137676179 + L1PA15-16 LINE L1 25 634 -6215 6745 155 101 87 chr9 4595265 4596936 -137674508 + pTR5 LTR ERV1 745 2438 0 13646 195 13 47 chr9 4596938 4601991 -137669453 + L1PA15-16 LINE L1 628 5851 -1094 1819 140 4 11 chr9 4601991 4602269 -137669175 + AluSx SINE Alu 1 276 -36 2078 85 0 29 chr9 4602269 4602550 -137668894 - AluY SINE Alu 0 311 39 13646 195 13 47 chr9 4602550 4602564 -137668880 + L1PA15-16 LINE L1 5850 5863 -1082 295 40 20 20 chr9 4602564 4602614 -137668830 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 13646 195 13 47 chr9 4602614 4603666 -137667778 + L1PA15-16 LINE L1 5863 6399 -546 3407 129 33 25 chr9 4603689 4604241 -137667203 + L1PA16 LINE L1 5602 6157 -9 396 314 70 39 chr9 4604268 4604526 -137666918 + Tigger8 DNA MER2_type 398 663 -3 1979 117 21 3 chr9 4604773 4605063 -137666381 + AluSq SINE Alu 1 295 -18 1823 115 15 8 chr9 4605071 4605331 -137666113 + AluSx SINE Alu 39 300 -12 751 236 98 94 chr9 4605392 4605893 -137665551 + MLT1K LTR MaLR 38 540 -48 183 80 0 0 chr9 4606106 4606131 -137665313 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 443 322 17 51 chr9 4607703 4607939 -137663505 - MIR SINE MIR -26 236 9 230 219 37 49 chr9 4609213 4609295 -137662149 - Charlie7 DNA MER1_type -2503 109 29 244 284 68 0 chr9 4609303 4609377 -137662067 - MIR3 SINE MIR -48 160 82 427 267 65 29 chr9 4609419 4609603 -137661841 + MER20B DNA MER1_type 5 198 -21 1051 173 99 15 chr9 4609821 4610023 -137661421 - MER20 DNA MER1_type 0 219 1 361 200 35 35 chr9 4610169 4610254 -137661190 + L2 LINE L2 3227 3311 -2 3013 201 53 5 chr9 4611696 4612318 -137659126 + L1MB8 LINE L1 5526 6177 -1 712 286 85 69 chr9 4612504 4613167 -137658277 - L2 LINE L2 0 3272 2596 281 271 106 40 chr9 4613305 4613456 -137657988 + L2 LINE L2 2927 3087 -185 1115 180 67 0 chr9 4613575 4613769 -137657675 + MER3 DNA MER1_type 2 208 -1 315 322 51 8 chr9 4613769 4613887 -137657557 + L2 LINE L2 3191 3313 0 385 340 106 7 chr9 4613927 4614068 -137657376 - L2 LINE L2 0 3313 3159 315 71 0 0 chr9 4615452 4615494 -137655950 + (TG)n Simple_repeat Simple_repeat 2 43 0 2365 88 0 25 chr9 4616328 4616645 -137654799 + AluY SINE Alu 1 309 -2 25 0 0 0 chr9 4617459 4617484 -137653960 + AT_rich Low_complexity Low_complexity 1 25 0 496 288 118 9 chr9 4618181 4618410 -137653034 + L2 LINE L2 2339 2592 -722 2445 56 17 0 chr9 4618427 4618715 -137652729 - AluY SINE Alu -18 293 1 969 154 32 21 chr9 4618717 4618905 -137652539 + MER3 DNA MER1_type 16 205 -4 364 301 156 6 chr9 4619022 4619195 -137652249 + L2 LINE L2 3111 3309 -4 3082 190 134 40 chr9 4619967 4620750 -137650694 + L1MC4 LINE L1 6701 7573 -469 576 197 30 53 chr9 4620750 4620882 -137650562 + FLAM_A SINE Alu 2 130 -3 3082 190 134 40 chr9 4620882 4620955 -137650489 + L1MC4 LINE L1 7573 7638 -404 999 164 0 0 chr9 4620970 4621122 -137650322 + AluJb SINE Alu 131 282 -30 180 0 0 0 chr9 4621122 4621142 -137650302 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 904 167 0 147 chr9 4621216 4621494 -137649950 + L1MC4 LINE L1 7819 7995 0 223 201 91 0 chr9 4623387 4623452 -137647992 + MIR SINE MIR 36 111 -97 309 353 10 0 chr9 4624313 4624415 -137647029 + MIR3 SINE MIR 85 187 -21 22 56 0 0 chr9 4625096 4625132 -137646312 + AT_rich Low_complexity Low_complexity 1 36 0 439 261 6 72 chr9 4625154 4625324 -137646120 - MIR SINE MIR -49 213 56 216 333 128 8 chr9 4626427 4626544 -137644900 + L2 LINE L2 3141 3271 -1 484 285 40 47 chr9 4626776 4627012 -137644432 + MIR SINE MIR 20 257 -5 192 77 0 0 chr9 4628336 4628362 -137643082 + (A)n Simple_repeat Simple_repeat 1 26 0 377 269 0 0 chr9 4629145 4629253 -137642191 + L1MC4a LINE L1 5809 5916 -1892 24 32 0 0 chr9 4630303 4630334 -137641110 + AT_rich Low_complexity Low_complexity 1 31 0 376 269 75 78 chr9 4631022 4631063 -137640381 + L1MDa LINE L1 1157 1197 -5343 905 207 12 0 chr9 4631063 4631227 -137640217 + FRAM SINE Alu 1 166 0 376 269 75 78 chr9 4631227 4631453 -137639991 + L1MDa LINE L1 1197 1423 -5117 230 259 147 42 chr9 4631523 4631666 -137639778 + L1MDa LINE L1 1490 1647 -4883 250 266 72 0 chr9 4631789 4631928 -137639516 + HAL1b LINE L1 437 1669 -785 1917 164 0 16 chr9 4632233 4632550 -137638894 + AluJo SINE Alu 1 312 0 243 297 72 9 chr9 4632618 4632729 -137638715 + MIR SINE MIR 65 182 -80 8877 124 21 9 chr9 4633479 4634913 -137636531 - Tigger1 DNA MER2_type -967 1451 1 220 231 0 0 chr9 4634935 4634974 -137636470 - MIR SINE MIR -146 116 78 2183 97 0 10 chr9 4635154 4635454 -137635990 + AluSc SINE Alu 1 297 -12 348 127 0 0 chr9 4636322 4636377 -137635067 + (A)n Simple_repeat Simple_repeat 1 55 0 274 190 69 0 chr9 4636815 4636873 -137634571 - L2 LINE L2 -2 3311 3250 480 270 103 88 chr9 4637159 4637615 -137633829 + L1ME4a LINE L1 5517 5979 -142 1806 23 0 0 chr9 4639079 4639296 -137632148 - L1PA4 LINE L1 -255 5900 5684 1430 6 12 6 chr9 4639298 4639467 -137631977 + L1PA4 LINE L1 5986 6155 0 2216 129 3 40 chr9 4640259 4640609 -137630835 - MER1B DNA MER1_type 0 337 1 952 57 0 0 chr9 4640884 4641006 -137630438 + L1PA13 LINE L1 6036 6157 -6 201 121 0 0 chr9 4641085 4641118 -137630326 + (TG)n Simple_repeat Simple_repeat 2 34 0 1021 160 41 78 chr9 4641466 4641759 -137629685 + L1MA4 LINE L1 6016 6297 -3 1901 161 0 22 chr9 4641804 4642121 -137629323 - AluSx SINE Alu -2 310 1 1028 162 80 51 chr9 4642782 4643096 -137628348 + MER33 DNA MER1_type 1 323 -1 243 146 0 0 chr9 4643517 4643558 -137627886 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 243 122 27 chr9 4643723 4643797 -137627647 + L3b LINE CR1 1198 1278 -305 233 402 37 0 chr9 4643813 4643920 -137627524 + L3b LINE CR1 1412 1522 -61 2286 120 0 3 chr9 4644712 4645013 -137626431 - AluSq SINE Alu -13 300 1 730 101 34 0 chr9 4645812 4645931 -137625513 + L1MA5 LINE L1 6176 6298 -2 747 130 130 0 chr9 4646232 4646355 -137625089 + AluSg SINE Alu 1 139 -171 3352 170 89 60 chr9 4747346 4748325 -137523119 + MER51B-int LTR ERV1 6809 7815 -1 2085 109 112 3 chr9 4748327 4748667 -137522777 + MER51B LTR ERV1 1 377 0 563 133 0 0 chr9 4748667 4748750 -137522694 + U6 snRNA snRNA 19 101 -6 182 37 37 0 chr9 4748799 4748826 -137522618 + (TAAAAA)n Simple_repeat Simple_repeat 5 32 0 1027 38 25 19 chr9 4749326 4749484 -137521960 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 996 130 0 7 chr9 4749585 4749731 -137521713 - AluSq/x SINE Alu -168 145 1 25 31 0 0 chr9 4750511 4750543 -137520901 + AT_rich Low_complexity Low_complexity 1 32 0 249 254 0 0 chr9 4750569 4750640 -137520804 + GA-rich Low_complexity Low_complexity 2 72 0 11324 164 53 59 chr9 4751957 4752590 -137518854 - L1 LINE L1 -1286 6279 5644 1386 117 5 33 chr9 4752590 4752803 -137518641 + AluSp SINE Alu 90 296 -17 11324 164 53 59 chr9 4752803 4753737 -137517707 - L1 LINE L1 -1921 5644 4706 2386 103 3 0 chr9 4753737 4754047 -137517397 - AluSp SINE Alu -1 312 2 11324 164 53 59 chr9 4754047 4757281 -137514163 - L1 LINE L1 -2859 4706 1280 1347 108 8 121 chr9 4757283 4757532 -137513912 + AluSg/x SINE Alu 84 304 -8 2005 88 4 0 chr9 4757638 4757888 -137513556 - AluSg SINE Alu -59 251 1 269 264 86 46 chr9 4758783 4758980 -137512464 - L1ME4a LINE L1 -211 5910 5706 212 359 83 28 chr9 4760162 4760307 -137511137 + MER5B DNA MER1_type 26 178 0 201 380 62 0 chr9 4760595 4760708 -137510736 - L2 LINE L2 -9 3263 3144 23 0 0 0 chr9 4761028 4761051 -137510393 + AT_rich Low_complexity Low_complexity 1 23 0 864 183 27 40 chr9 4761067 4761291 -137510153 - MER74B LTR ERVL -347 275 55 535 183 67 25 chr9 4761295 4761415 -137510029 - MER45 DNA AcHobo -914 126 2 338 330 65 25 chr9 4761772 4761972 -137509472 - L2 LINE L2 -498 2816 2609 2191 100 20 13 chr9 4762890 4763018 -137508426 + AluSc SINE Alu 1 127 -182 2302 106 0 6 chr9 4763018 4763330 -137508114 + AluSg SINE Alu 1 310 0 2191 100 20 13 chr9 4763330 4763502 -137507942 + AluSc SINE Alu 127 303 -6 475 152 13 0 chr9 4763606 4763685 -137507759 + MER33 DNA MER1_type 1 80 -244 216 309 30 19 chr9 4764065 4764214 -137507230 + GA-rich Low_complexity Low_complexity 3 243 0 324 0 0 0 chr9 4766220 4766256 -137505188 + (TG)n Simple_repeat Simple_repeat 2 37 0 2416 72 0 0 chr9 4766634 4766954 -137504490 + AluY SINE Alu 1 311 0 436 271 107 11 chr9 4767873 4768061 -137503383 - MIR SINE MIR -39 223 23 243 316 109 1 chr9 4768121 4768238 -137503206 + MIR SINE MIR 3 128 -80 339 237 21 63 chr9 4768435 4768580 -137502864 + MLT1K LTR MaLR 147 280 -335 1257 160 36 14 chr9 4768938 4769157 -137502287 - AluJo SINE Alu -3 309 86 13907 89 13 1 chr9 4769990 4772042 -137499402 - L1P LINE L1 -1423 4723 2646 395 198 79 141 chr9 4772329 4772556 -137498888 - MER102a DNA MER1_type -6 324 112 378 0 0 0 chr9 4772593 4772635 -137498809 + (CA)n Simple_repeat Simple_repeat 1 42 0 1532 157 16 12 chr9 4772829 4773084 -137498360 + AluJo SINE Alu 40 295 -17 3646 220 142 9 chr9 4773160 4774339 -137497105 - L1MC5 LINE L1 -28 8014 6699 375 260 7 89 chr9 4774355 4774501 -137496943 - L1MC4 LINE L1 -1438 6604 6471 381 284 149 0 chr9 4775178 4775319 -137496125 + MER5B DNA MER1_type 1 162 -16 3412 162 25 7 chr9 4775596 4776190 -137495254 - MER6A DNA MER2_type 0 605 1 246 235 0 0 chr9 4777657 4777708 -137493736 + CT-rich Low_complexity Low_complexity 2 52 0 241 330 28 0 chr9 4778328 4778437 -137493007 + GA-rich Low_complexity Low_complexity 3 114 0 1908 125 15 0 chr9 4778561 4778825 -137492619 + AluSx SINE Alu 1 268 -44 442 136 0 23 chr9 4778949 4779037 -137492407 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2679 45 0 0 chr9 4779332 4779643 -137491801 + AluYa5 SINE Alu 1 311 0 228 241 60 69 chr9 4779916 4780032 -137491412 + Charlie4 DNA MER1_type 1847 1961 0 1811 145 9 60 chr9 4780228 4780546 -137490898 + AluSx SINE Alu 1 302 -10 2153 109 33 0 chr9 4780585 4780887 -137490557 + AluSx SINE Alu 1 312 0 418 181 106 0 chr9 4780979 4781073 -137490371 + MER20 DNA MER1_type 24 127 -92 68 55 0 0 chr9 4782296 4782406 -137489038 + AT_rich Low_complexity Low_complexity 1 110 0 1631 198 63 25 chr9 4782831 4783226 -137488218 + L1MC4 LINE L1 7357 7766 -276 2012 73 0 33 chr9 4784329 4784604 -137486840 - AluY SINE Alu -45 266 1 2287 83 0 49 chr9 4785303 4785630 -137485814 + AluY SINE Alu 1 311 0 375 318 117 31 chr9 4785654 4785877 -137485567 + MIR SINE MIR 7 248 -14 218 342 94 8 chr9 4786111 4786228 -137485216 - MIR3 SINE MIR -51 157 31 190 310 40 60 chr9 4787299 4787399 -137484045 - MIR3 SINE MIR -22 186 89 31 0 0 0 chr9 4787843 4787874 -137483570 + AT_rich Low_complexity Low_complexity 1 31 0 509 93 58 0 chr9 4789530 4789616 -137481828 - MSTB1 LTR MaLR -341 91 1 487 261 30 37 chr9 4789667 4789801 -137481643 + MER5A DNA MER1_type 57 189 0 332 267 64 41 chr9 4790180 4790352 -137481092 + L1ME4a LINE L1 5574 5749 -372 1167 253 67 75 chr9 4790355 4790861 -137480583 - MLT1J LTR MaLR -7 504 3 331 226 209 43 chr9 4790900 4791134 -137480310 + L1ME4a LINE L1 5803 6075 -46 3686 98 7 19 chr9 4792275 4792746 -137478698 - L1PA15 LINE L1 -255 5910 5443 1826 148 3 14 chr9 4792746 4793049 -137478395 - AluJo SINE Alu 0 302 3 3686 98 7 19 chr9 4793049 4793114 -137478330 - L1PA15 LINE L1 -722 5443 5379 * 5310 172 23 14 chr9 4793112 4794250 -137477194 + L1P LINE L1 4252 5399 -765 1082 266 135 37 chr9 4794254 4794772 -137476672 - L2 LINE L2 -1652 1662 1094 1710 122 61 34 chr9 4795130 4795425 -137476019 + AluSg SINE Alu 1 303 -7 219 186 0 0 chr9 4796198 4796241 -137475203 + CT-rich Low_complexity Low_complexity 1 43 0 213 256 61 24 chr9 4796782 4796864 -137474580 + MER91C DNA MER1_type 24 108 -32 2808 159 39 4 chr9 4797809 4798300 -137473144 - L1MB3 LINE L1 -3 6180 5673 3167 88 16 7 chr9 4798307 4798730 -137472714 - L1PA11 LINE L1 -3 6171 5745 956 237 11 0 chr9 4798876 4799062 -137472382 - MER5A DNA MER1_type -1 188 1 444 172 0 94 chr9 4799148 4799340 -137472104 + (AGGTG)n Simple_repeat Simple_repeat 2 175 0 1433 224 118 7 chr9 4799670 4800086 -137471358 - MLT1C LTR MaLR 0 467 6 352 338 8 72 chr9 4800317 4800580 -137470864 - L2 LINE L2 -191 3081 2836 477 356 18 18 chr9 4800602 4800827 -137470617 - L3 LINE CR1 -287 1290 1066 2508 56 0 0 chr9 4801104 4801406 -137470038 + AluYa5 SINE Alu 1 302 -9 1731 110 16 0 chr9 4801406 4801651 -137469793 + L1MA2 LINE L1 6056 6304 0 22 35 0 0 chr9 4801651 4801680 -137469764 + AT_rich Low_complexity Low_complexity 1 29 0 1492 133 27 5 chr9 4801688 4801956 -137469488 + LTR24C LTR ERV1 316 635 0 1829 159 0 20 chr9 4802639 4802934 -137468510 - AluSx SINE Alu -23 289 1 185 0 40 0 chr9 4805199 4805224 -137466220 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 451 193 83 121 chr9 4805844 4806109 -137465335 + MER112 DNA MER1_type 1 255 -1 213 220 40 0 chr9 4806637 4806687 -137464757 + CT-rich Low_complexity Low_complexity 3 54 0 225 371 86 9 chr9 4807572 4807688 -137463756 + L2 LINE L2 3187 3311 -2 196 336 8 50 chr9 4808087 4808206 -137463238 + MIR SINE MIR 32 145 -63 2138 122 0 0 chr9 4809911 4810199 -137461245 + AluSx SINE Alu 1 288 -24 448 204 106 18 chr9 4810214 4810327 -137461117 + Charlie4 DNA MER1_type 1839 1961 0 1385 170 15 26 chr9 4810663 4810928 -137460516 + L1PA13 LINE L1 5891 6152 -11 189 0 0 0 chr9 4810928 4810949 -137460495 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2121 129 0 0 chr9 4810970 4811265 -137460179 + AluSx SINE Alu 1 295 -17 194 269 108 9 chr9 4811503 4811619 -137459825 + MIR SINE MIR 9 138 -70 618 247 159 18 chr9 4811621 4811848 -137459596 - MIR SINE MIR -3 259 1 287 228 0 0 chr9 4812178 4812235 -137459209 + MLT1J2 LTR MaLR 394 450 0 227 215 15 31 chr9 4812389 4812454 -137458990 + MIR SINE MIR 168 231 -31 436 267 50 62 chr9 4813537 4813698 -137457746 + MIR SINE MIR 53 211 -51 2099 190 72 11 chr9 4813780 4814237 -137457207 + MER31A LTR ERV1 1 485 0 29 47 0 0 chr9 4814928 4814971 -137456473 + AT_rich Low_complexity Low_complexity 1 43 0 190 148 37 0 chr9 4815134 4815188 -137456256 + (TA)n Simple_repeat Simple_repeat 2 57 0 961 211 0 0 chr9 4815253 4815433 -137456011 + AluJb SINE Alu 131 310 -2 2536 179 79 20 chr9 4815434 4815966 -137455478 - Tigger6a DNA MER2_type -575 1022 450 1769 127 33 23 chr9 4815966 4816266 -137455178 - AluSg SINE Alu -7 303 1 2536 179 79 20 chr9 4816266 4816331 -137455113 - Tigger6a DNA MER2_type -1147 450 390 693 323 81 9 chr9 4816609 4816953 -137454491 - L1MC/D LINE L1 -1986 5822 5454 439 272 146 0 chr9 4817101 4817259 -137454185 - MER20B DNA MER1_type -602 181 1 1616 101 5 0 chr9 4817652 4817871 -137453573 + AluSg/x SINE Alu 83 302 -10 386 165 142 63 chr9 4818290 4818417 -137453027 - MER113 DNA MER1_type? -90 431 295 2293 129 122 38 chr9 4818429 4818660 -137452784 - MSTA LTR MaLR 0 428 218 2055 106 39 0 chr9 4818660 4818965 -137452479 + AluSx SINE Alu 1 312 0 2293 129 122 38 chr9 4818965 4819128 -137452316 - MSTA LTR MaLR -210 218 1 287 224 0 94 chr9 4819247 4819332 -137452112 - MER5B DNA MER1_type -99 79 3 281 221 163 0 chr9 4819744 4819830 -137451614 - MER113 DNA MER1_type? -127 394 295 373 167 15 0 chr9 4819843 4819909 -137451535 - MSTA LTR MaLR 0 428 362 180 0 0 0 chr9 4820338 4820358 -137451086 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2166 132 0 16 chr9 4820358 4820669 -137450775 + AluSx SINE Alu 1 306 -6 445 260 253 4 chr9 4820934 4821215 -137450229 + L2 LINE L2 2303 2653 -661 284 279 13 0 chr9 4821216 4821295 -137450149 - MER116 DNA Mariner 0 80 1 628 310 48 85 chr9 4821300 4821913 -137449531 + L2 LINE L2 2660 3251 -21 338 304 152 23 chr9 4822013 4822184 -137449260 - MIR SINE MIR -50 212 20 243 0 0 0 chr9 4822190 4822217 -137449227 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 422 268 72 102 chr9 4822269 4822504 -137448940 - MER102b DNA MER1_type -11 330 103 763 276 30 42 chr9 4823487 4823686 -137447758 - MLT1J2 LTR MaLR 0 450 253 1383 175 0 43 chr9 4823686 4823724 -137447720 - MER58A DNA MER1_type -2196 224 186 2211 120 3 0 chr9 4823724 4824025 -137447419 + AluSq SINE Alu 1 302 -11 1383 175 0 43 chr9 4824025 4824220 -137447224 - MER58A DNA MER1_type -2234 186 1 763 276 30 42 chr9 4824220 4824285 -137447159 - MLT1J2 LTR MaLR -197 253 189 185 365 48 21 chr9 4824524 4824669 -137446775 - L2 LINE L2 -318 2954 2806 2073 132 0 22 chr9 4824790 4825108 -137446336 - AluSx SINE Alu 0 312 2 2077 157 0 0 chr9 4825311 4825623 -137445821 + AluSx SINE Alu 1 312 0 2234 103 0 3 chr9 4825976 4826277 -137445167 + AluSc SINE Alu 1 300 -9 322 295 156 64 chr9 4826398 4826693 -137444751 - L2 LINE L2 -17 3255 2934 189 171 0 0 chr9 4826744 4826779 -137444665 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 2402 70 0 3 chr9 4827831 4828111 -137443333 + AluY SINE Alu 1 281 -30 286 51 0 0 chr9 4828111 4828150 -137443294 + (CAAAA)n Simple_repeat Simple_repeat 1 130 0 313 228 272 13 chr9 4828316 4828474 -137442970 + L1ME4a LINE L1 5670 5868 -253 2221 96 13 26 chr9 4828687 4829000 -137442444 + AluSq SINE Alu 1 309 -4 391 279 14 21 chr9 4829542 4829568 -137441876 - MIR SINE MIR -46 216 191 483 69 0 0 chr9 4829568 4829640 -137441804 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 391 279 14 21 chr9 4829640 4829753 -137441691 - MIR SINE MIR -71 191 78 446 162 0 0 chr9 4829757 4829825 -137441619 + Tigger2 DNA MER2_type 2 69 -2649 * 2557 142 56 7 chr9 4829809 4830240 -137441204 + Tigger2 DNA MER2_type 2267 2718 0 182 271 0 0 chr9 4830260 4830308 -137441136 - MIR SINE MIR -208 54 7 2238 125 40 8 chr9 4830741 4831094 -137440350 + THE1B LTR MaLR 1 364 0 271 212 40 30 chr9 4831239 4831338 -137440106 - L1MEd LINE L1 -5029 1090 991 204 200 0 0 chr9 4831852 4831897 -137439547 + (CGG)n Simple_repeat Simple_repeat 2 46 0 1046 151 12 0 chr9 4833676 4833842 -137437602 + AluSg/x SINE Alu 140 307 -5 1986 131 17 10 chr9 4833854 4834151 -137437293 + AluJb SINE Alu 1 299 -13 537 219 62 23 chr9 4834960 4835088 -137436356 + FLAM_C SINE Alu 3 135 -8 324 293 138 22 chr9 4835496 4835721 -137435723 + MIR SINE MIR 6 256 -6 47 0 0 0 chr9 4835967 4836014 -137435430 + AT_rich Low_complexity Low_complexity 1 47 0 702 278 112 46 chr9 4836635 4836984 -137434460 - L2 LINE L2 0 3313 2942 345 361 67 13 chr9 4837217 4837516 -137433928 - L2 LINE L2 -923 2391 2077 816 181 0 0 chr9 4837724 4837857 -137433587 - FLAM_C SINE Alu 0 133 1 201 59 88 0 chr9 4837857 4837891 -137433553 + T-rich Low_complexity Low_complexity 2 38 0 1551 185 10 20 chr9 4837950 4838242 -137433202 + AluJo SINE Alu 1 289 -23 387 155 0 14 chr9 4838408 4838479 -137432965 - MLT1C LTR MaLR 0 467 398 689 169 245 0 chr9 4838500 4838684 -137432760 - MIR SINE MIR -26 236 8 202 319 121 45 chr9 4838680 4838837 -137432607 + L2 LINE L2 3096 3264 -8 * 25 31 0 0 chr9 4839996 4840028 -137431416 + AT_rich Low_complexity Low_complexity 1 32 0 205 182 0 0 chr9 4840146 4840179 -137431265 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 515 97 84 0 chr9 4840233 4840387 -137431057 + (TA)n Simple_repeat Simple_repeat 1 167 0 2302 105 0 0 chr9 4840388 4840682 -137430762 - AluSx SINE Alu -18 294 1 1292 131 5 15 chr9 4841639 4841837 -137429607 - AluSg/x SINE Alu -5 305 110 2146 109 13 3 chr9 4842875 4843178 -137428266 + AluY SINE Alu 3 308 -3 2035 124 7 3 chr9 4843224 4843515 -137427929 + AluSx SINE Alu 3 294 -18 317 267 33 27 chr9 4843550 4843700 -137427744 + L1ME4a LINE L1 5719 5869 -252 708 174 16 0 chr9 4843786 4843907 -137427537 + FLAM_C SINE Alu 2 124 -19 924 125 0 22 chr9 4844044 4844180 -137427264 - AluSq/x SINE Alu -173 139 7 739 155 9 0 chr9 4844756 4844872 -137426572 - AluSg/x SINE Alu -9 301 185 2037 113 18 0 chr9 4845059 4845334 -137426110 + AluSx SINE Alu 1 280 -32 234 0 0 0 chr9 4845338 4845364 -137426080 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 252 0 0 0 chr9 4845372 4845400 -137426044 + (TG)n Simple_repeat Simple_repeat 2 29 0 464 284 123 89 chr9 4845459 4845910 -137425534 - L1ME4a LINE L1 -293 5828 5372 266 257 0 0 chr9 4845952 4846022 -137425422 - MIR SINE MIR -127 135 66 2295 105 0 10 chr9 4847294 4847598 -137423846 + AluSg SINE Alu 1 301 -9 447 301 15 0 chr9 4847605 4847741 -137423703 + MIR SINE MIR 15 152 -110 287 316 41 0 chr9 4847776 4847874 -137423570 + MIR SINE MIR 140 241 -21 683 177 53 0 chr9 4847971 4848084 -137423360 + LTR8 LTR ERV1 1 119 -572 1316 117 0 0 chr9 4848084 4848263 -137423181 - AluSg/x SINE Alu -2 308 130 2238 117 7 0 chr9 4848263 4848571 -137422873 - AluSx SINE Alu 0 312 3 1136 145 40 122 chr9 4848573 4848869 -137422575 + LTR8A LTR ERV1 119 390 -337 2140 117 0 0 chr9 4848888 4849171 -137422273 - AluSq SINE Alu -30 283 1 1242 198 84 62 chr9 4849171 4849540 -137421904 + LTR8A LTR ERV1 351 727 0 2168 99 3 20 chr9 4849576 4849878 -137421566 - AluSq SINE Alu -16 297 1 21 89 0 0 chr9 4849902 4849958 -137421486 + AT_rich Low_complexity Low_complexity 1 56 0 2858 123 186 6 chr9 4850021 4850548 -137420896 + LTR29 LTR ERV1 1 622 0 1616 165 0 29 chr9 4850581 4850854 -137420590 - AluJo SINE Alu -47 265 1 957 64 0 0 chr9 4850938 4851048 -137420396 - AluSq SINE Alu -95 218 109 735 316 0 0 chr9 4851185 4851394 -137420050 - MIR SINE MIR -26 236 28 1530 173 0 26 chr9 4851545 4851811 -137419633 - AluJo SINE Alu -16 296 38 808 243 18 101 chr9 4852620 4852787 -137418657 + L2 LINE L2 1858 1985 -1329 1592 153 0 130 chr9 4852787 4853134 -137418310 - AluJb SINE Alu -10 302 1 808 243 18 101 chr9 4853134 4853303 -137418141 + L2 LINE L2 1985 2166 -1148 1451 269 112 11 chr9 4853303 4853825 -137417619 + L2 LINE L2 2449 2917 -396 2046 106 0 35 chr9 4853825 4854108 -137417336 - AluSg SINE Alu -37 273 1 1451 269 112 11 chr9 4854108 4854143 -137417301 + L2 LINE L2 2917 2947 -366 183 80 0 0 chr9 4854143 4854168 -137417276 + (CACCAT)n Simple_repeat Simple_repeat 3 27 0 1451 269 112 11 chr9 4854168 4854383 -137417061 + L2 LINE L2 2947 3313 0 2341 100 0 13 chr9 4854750 4855050 -137416394 - AluSc SINE Alu -13 296 1 1811 176 7 0 chr9 4855243 4855533 -137415911 - AluJo SINE Alu -18 294 3 3144 285 65 0 chr9 4855535 4856181 -137415263 + Tigger1 DNA MER2_type 44 731 -1687 2242 143 45 31 chr9 4856175 4856482 -137414962 + Tigger1 DNA MER2_type 1993 2309 -109 * 1967 145 21 3 chr9 4856482 4856772 -137414672 - AluSx SINE Alu -17 295 1 2242 143 45 31 chr9 4856772 4856883 -137414561 + Tigger1 DNA MER2_type 2309 2417 -1 238 321 37 83 chr9 4857050 4857159 -137414285 - MIR SINE MIR -89 119 16 7864 169 13 26 chr9 4857973 4859395 -137412049 - L1P LINE L1 -4732 1414 11 565 309 40 15 chr9 4859511 4859712 -137411732 - MLT1I LTR MaLR -203 206 1 673 243 0 0 chr9 4860197 4860333 -137411111 + FLAM_C SINE Alu 2 137 -6 11886 84 10 9 chr9 4860588 4863681 -137407763 + L1PA6 LINE L1 1635 5401 -745 3486 43 2 0 chr9 4863681 4864096 -137407348 + L1PA6 LINE L1 5730 6146 -8 10648 168 42 11 chr9 4864336 4864826 -137406618 + L1MA6 LINE L1 3197 3670 -2476 1815 162 7 13 chr9 4864826 4865135 -137406309 + AluJb SINE Alu 1 307 -5 10648 168 42 11 chr9 4865135 4866745 -137404699 + L1MA6 LINE L1 3670 5363 -783 1532 195 6 38 chr9 4866748 4867061 -137404383 + AluJb SINE Alu 1 303 -9 645 183 37 43 chr9 4867063 4867227 -137404217 + L1MA6 LINE L1 5906 6068 -232 746 162 58 104 chr9 4867227 4867486 -137403958 + L1MB8 LINE L1 5931 6177 -1 314 240 82 16 chr9 4867667 4867850 -137403594 - L1M4 LINE L1 -1786 4360 4166 * 40396 74 9 2 chr9 4867829 4873937 -137397507 - L1PA6 LINE L1 -2 6152 1 2389 235 37 7 chr9 4873948 4874620 -137396824 - L1M4 LINE L1 -2294 3852 3161 21 57 0 0 chr9 4874820 4874855 -137396589 + AT_rich Low_complexity Low_complexity 1 35 0 1138 86 0 7 chr9 4874855 4875007 -137396437 - L1MA1 LINE L1 -4 6298 6148 2069 141 0 3 chr9 4875017 4875330 -137396114 - AluSx SINE Alu 0 312 1 270 270 51 7 chr9 4875759 4875896 -137395548 + MER113 DNA MER1_type? 1 143 -378 2222 125 0 6 chr9 4875901 4876212 -137395232 + AluSx SINE Alu 1 309 -3 31 26 0 0 chr9 4876212 4876250 -137395194 + AT_rich Low_complexity Low_complexity 1 38 0 671 231 21 0 chr9 4876604 4876747 -137394697 + MER58B DNA MER1_type 181 326 -15 1520 199 11 11 chr9 4876866 4877147 -137394297 + AluJo SINE Alu 1 281 -31 395 250 75 19 chr9 4878765 4878925 -137392519 - L1MC5 LINE L1 -184 7777 7609 202 315 130 0 chr9 4879079 4879187 -137392257 + MIR SINE MIR 17 138 -70 692 281 59 64 chr9 4879578 4880034 -137391410 - L1ME4a LINE L1 -178 5943 5490 344 114 0 0 chr9 4880364 4880408 -137391036 + MER72 LTR ERV1 585 628 -94 864 172 0 0 chr9 4880760 4880882 -137390562 + FLAM_C SINE Alu 1 122 -11 746 276 16 79 chr9 4880936 4881240 -137390204 - MER102a DNA MER1_type -18 312 28 20138 39 10 2 chr9 4881790 4884510 -137386934 + L1P2 LINE L1 2915 5658 -497 260 290 220 5 chr9 4885846 4886032 -137385412 + L2 LINE L2 2921 3146 -167 2118 218 55 0 chr9 4886390 4886859 -137384585 - Charlie4a DNA MER1_type 0 508 14 217 233 178 0 chr9 4886911 4886984 -137384460 + L2 LINE L2 3227 3312 -1 498 116 0 0 chr9 4887963 4888032 -137383412 + MSTA LTR MaLR 360 428 0 281 221 163 0 chr9 4888045 4888131 -137383313 + MER113 DNA MER1_type? 295 394 -127 230 271 0 94 chr9 4888542 4888627 -137382817 + MER5B DNA MER1_type 3 79 -99 1338 247 36 11 chr9 4888785 4889141 -137382303 + L1ME1 LINE L1 5778 6142 -24 180 111 0 0 chr9 4889597 4889624 -137381820 + (TTGGGG)n Simple_repeat Simple_repeat 6 32 0 350 384 21 11 chr9 4889654 4889844 -137381600 - L2 LINE L2 -557 2757 2566 216 67 0 0 chr9 4889856 4889886 -137381558 + (CATTA)n Simple_repeat Simple_repeat 3 32 0 214 29 57 0 chr9 4889970 4890005 -137381439 + (TC)n Simple_repeat Simple_repeat 1 37 0 997 280 22 19 chr9 4890050 4890318 -137381126 - MLT1H1 LTR MaLR -284 271 3 224 298 162 10 chr9 4890398 4890596 -137380848 - L2 LINE L2 -993 2321 2094 247 258 16 0 chr9 4891963 4892025 -137379419 + MIR SINE MIR 77 139 -123 638 269 60 96 chr9 4892325 4892772 -137378672 - MLT1K LTR MaLR -2 586 156 2375 159 3 3 chr9 4893086 4893451 -137377993 - MLT1A1 LTR MaLR 0 365 1 306 0 0 0 chr9 4893500 4893534 -137377910 + (CA)n Simple_repeat Simple_repeat 2 35 0 2756 208 52 67 chr9 4893543 4894164 -137377280 + L1MC/D LINE L1 4019 4647 -1499 1946 146 20 3 chr9 4894164 4894466 -137376978 + AluJb SINE Alu 1 307 -5 2756 208 52 67 chr9 4894466 4894597 -137376847 + L1MC/D LINE L1 4647 4796 -1350 310 28 0 0 chr9 4894597 4894633 -137376811 - MADE1 DNA Mariner -44 36 1 2756 208 52 67 chr9 4894633 4894684 -137376760 + L1MC/D LINE L1 4796 4846 -1300 906 198 0 18 chr9 4894695 4894862 -137376582 - FRAM SINE Alu -12 164 1 2064 175 53 20 chr9 4894866 4895532 -137375912 + L1MC/D LINE L1 4849 5542 -744 2038 158 0 0 chr9 4895921 4896231 -137375213 + AluJb SINE Alu 1 310 -2 403 259 229 15 chr9 4896316 4896521 -137374923 - MIR SINE MIR -2 260 12 541 259 56 0 chr9 4896974 4897117 -137374327 - MER117 DNA MER1_type -35 162 12 2344 104 0 7 chr9 4898858 4899165 -137372279 - AluSx SINE Alu -7 305 1 1943 119 0 63 chr9 4899457 4899640 -137371804 - AluSx SINE Alu 0 316 160 1969 113 7 7 chr9 4899640 4899922 -137371522 - AluSx SINE Alu -10 302 21 1943 119 0 63 chr9 4899922 4900073 -137371371 - AluSx SINE Alu -156 160 1 2132 112 0 13 chr9 4900766 4901069 -137370375 + AluY SINE Alu 1 299 -12 561 304 52 87 chr9 4902665 4903092 -137368352 - L2 LINE L2 -27 3245 2834 1013 266 135 17 chr9 4903092 4903558 -137367886 - LTR33 LTR ERVL 0 521 1 1429 156 0 0 chr9 4903658 4903869 -137367575 - AluSg/x SINE Alu -20 290 80 1580 130 0 0 chr9 4903971 4904187 -137367257 - AluSx SINE Alu -96 216 1 264 257 14 14 chr9 4904368 4904442 -137367002 + L2 LINE L2 3195 3268 -4 224 282 15 84 chr9 4904678 4904809 -137366635 - L2 LINE L2 0 3272 3151 933 288 16 0 chr9 4904865 4905108 -137366336 - MIR SINE MIR -15 247 1 230 335 57 67 chr9 4905179 4905388 -137366056 - L2 LINE L2 -214 3058 2852 1230 239 38 35 chr9 4906476 4906844 -137364600 - MLT1J LTR MaLR 0 511 143 1581 164 36 22 chr9 4906903 4907178 -137364266 + AluJb SINE Alu 1 279 -33 288 211 14 0 chr9 4907282 4907353 -137364091 + L1MB3 LINE L1 4744 4815 -1331 565 185 0 11 chr9 4907353 4907445 -137363999 + AluJb SINE Alu 41 131 -181 709 252 99 10 chr9 4907445 4907741 -137363703 + L1MB3 LINE L1 4761 5093 -1053 1182 179 0 23 chr9 4907787 4908005 -137363439 - AluJb SINE Alu -13 299 87 976 177 0 11 chr9 4908076 4908257 -137363187 - AluSg/x SINE Alu -5 305 127 292 261 46 50 chr9 4908314 4908467 -137362977 + L1MB3 LINE L1 5257 5412 -753 708 212 54 163 chr9 4908532 4909004 -137362440 + L1MC4a LINE L1 5692 6101 -1707 848 157 0 30 chr9 4909004 4909138 -137362306 - FLAM_C SINE Alu -3 130 1 708 212 54 163 chr9 4909138 4909198 -137362246 + L1MC4a LINE L1 6101 6166 -1642 2318 108 0 0 chr9 4909444 4909751 -137361693 - AluSq SINE Alu -6 307 1 3455 128 67 92 chr9 4909944 4910512 -137360932 + L1MB3 LINE L1 5450 5996 -187 1943 148 3 3 chr9 4910512 4910803 -137360641 - AluJb SINE Alu -21 291 1 3455 128 67 92 chr9 4910803 4910985 -137360459 + L1MB3 LINE L1 5996 6181 -2 1572 227 108 83 chr9 4910985 4911421 -137360023 + L1MC5 LINE L1 6560 6984 -977 1936 112 21 17 chr9 4911421 4911708 -137359736 + AluSx SINE Alu 7 294 -18 1572 227 108 83 chr9 4911708 4912125 -137359319 + L1MC5 LINE L1 6984 7443 -518 27 0 0 0 chr9 4912137 4912164 -137359280 + AT_rich Low_complexity Low_complexity 1 27 0 383 147 0 29 chr9 4912178 4912246 -137359198 - AluJb SINE Alu -167 135 70 710 181 95 0 chr9 4912793 4912909 -137358535 + FLAM_C SINE Alu 3 129 -14 241 261 15 0 chr9 4912962 4913027 -137358417 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 183 292 0 97 chr9 4913221 4913293 -137358151 - L2 LINE L2 -332 2940 2876 205 348 22 0 chr9 4913323 4913415 -137358029 - L2 LINE L2 -484 2830 2737 2354 76 0 13 chr9 4914012 4914315 -137357129 - AluY SINE Alu -8 303 5 2756 186 117 41 chr9 4915201 4915809 -137355635 - MLT1E1 LTR MaLR 0 654 1 764 138 9 0 chr9 4916476 4916585 -137354859 - FLAM_C SINE Alu -11 132 23 262 290 54 21 chr9 4916590 4916776 -137354668 - L1MEd LINE L1 -3107 3022 2831 338 288 72 16 chr9 4916789 4917039 -137354405 - L1MEd LINE L1 -5043 1076 813 257 341 58 45 chr9 4917236 4917547 -137353897 - L1MEd LINE L1 -5555 564 250 1663 178 31 0 chr9 4917576 4917869 -137353575 + MSTB2 LTR MaLR 7 308 -149 30 27 0 0 chr9 4917874 4917911 -137353533 + AT_rich Low_complexity Low_complexity 1 37 0 1129 149 0 0 chr9 4917930 4918098 -137353346 + MSTB2 LTR MaLR 290 457 0 778 210 32 68 chr9 4918689 4918908 -137352536 + MIR SINE MIR 52 262 0 237 217 142 75 chr9 4919315 4919435 -137352009 - L2 LINE L2 -8 3305 3178 2349 131 16 31 chr9 4919686 4920067 -137351377 + THE1C LTR MaLR 1 375 0 247 241 17 0 chr9 4920199 4920257 -137351187 - MER5A DNA MER1_type -3 186 128 2520 78 0 0 chr9 4920259 4920567 -137350877 + AluY SINE Alu 1 308 -3 21 0 0 0 chr9 4921359 4921380 -137350064 + AT_rich Low_complexity Low_complexity 1 21 0 3755 170 20 27 chr9 4921395 4922162 -137349282 + L1MB7 LINE L1 5202 5969 -215 731 300 18 0 chr9 4922818 4923038 -137348406 + MIR SINE MIR 36 259 -3 1029 193 0 0 chr9 4924079 4924245 -137347199 + FRAM SINE Alu 1 166 0 2244 104 3 25 chr9 4924347 4924664 -137346780 - AluSx SINE Alu -2 310 1 515 179 36 0 chr9 4925155 4925267 -137346177 - L1 LINE L1 -2824 3322 3207 29 47 0 0 chr9 4925555 4925598 -137345846 + AT_rich Low_complexity Low_complexity 1 43 0 207 179 0 0 chr9 4926274 4926313 -137345131 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 201 281 53 61 chr9 4928024 4928138 -137343306 + MIR SINE MIR 99 211 -51 305 326 28 14 chr9 4928167 4928220 -137343224 - MIR3 SINE MIR -5 203 152 1901 164 0 22 chr9 4928220 4928538 -137342906 + AluJo SINE Alu 1 311 -1 305 326 28 14 chr9 4928538 4928628 -137342816 - MIR3 SINE MIR -56 152 58 699 295 52 33 chr9 4928728 4928999 -137342445 - Charlie8 DNA MER1_type -2141 276 1 1730 220 37 8 chr9 4929008 4929363 -137342081 + MLT1A1 LTR MaLR 1 365 0 2115 121 13 16 chr9 4929380 4929686 -137341758 - AluSx SINE Alu -7 305 1 190 379 38 15 chr9 4929686 4929818 -137341626 + L2 LINE L2 2776 2910 -404 1785 166 3 24 chr9 4929926 4930222 -137341222 - AluJo SINE Alu -19 293 4 1596 165 113 130 chr9 4930754 4931401 -137340043 + LTR1B LTR ERV1 110 745 -81 187 184 53 0 chr9 4931562 4931600 -137339844 - MIR SINE MIR -63 145 106 3675 112 112 0 chr9 4931922 4932493 -137338951 - LTR24C LTR ERV1 0 635 1 200 275 0 0 chr9 4932884 4932924 -137338520 + polypurine Low_complexity Low_complexity 4 43 0 183 80 0 0 chr9 4932930 4932955 -137338489 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr9 4933494 4933515 -137337929 + AT_rich Low_complexity Low_complexity 1 21 0 1813 156 14 3 chr9 4934634 4934929 -137336515 + AluJb SINE Alu 1 298 -14 44768 41 0 1 chr9 4936154 4942314 -137329130 + L1PA3 LINE L1 2 6155 0 25 0 0 0 chr9 4942328 4942353 -137329091 + AT_rich Low_complexity Low_complexity 1 25 0 738 263 40 11 chr9 4942381 4942556 -137328888 - AluJo SINE Alu -47 265 86 1287 192 5 0 chr9 4942556 4942775 -137328669 - AluJo SINE Alu -92 220 1 276 320 50 50 chr9 4942868 4943068 -137328376 + L2 LINE L2 2885 3084 -188 306 106 0 0 chr9 4943270 4943317 -137328127 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1969 152 7 7 chr9 4943451 4943761 -137327683 + AluSx SINE Alu 1 310 -2 1937 147 3 0 chr9 4944096 4944388 -137327056 - AluSx SINE Alu -19 293 1 482 237 21 0 chr9 4945140 4945237 -137326207 + MER81 DNA DNA 2 100 -14 22 0 0 0 chr9 4945770 4945792 -137325652 + AT_rich Low_complexity Low_complexity 1 22 0 180 255 21 0 chr9 4946006 4946053 -137325391 + L2 LINE L2 3225 3272 0 224 179 30 60 chr9 4946435 4946502 -137324942 - MIR SINE MIR -94 168 104 1217 124 36 26 chr9 4946502 4946695 -137324749 + AluJo SINE Alu 1 195 -117 222 361 0 0 chr9 4946995 4947067 -137324377 - L2 LINE L2 -445 2869 2798 750 120 0 0 chr9 4947548 4947648 -137323796 - AluSg/x SINE Alu -26 284 185 570 318 0 6 chr9 4948036 4948215 -137323229 + (CA)n Simple_repeat Simple_repeat 2 179 0 458 316 0 6 chr9 4948248 4948608 -137322836 + (CA)n Simple_repeat Simple_repeat 1 357 0 417 363 0 6 chr9 4948690 4948869 -137322575 + (CA)n Simple_repeat Simple_repeat 2 179 0 8562 48 1 2 chr9 4949253 4950949 -137320495 + L1PA3 LINE L1 4315 6007 -148 2087 115 0 3 chr9 4951246 4951555 -137319889 + AluSq SINE Alu 1 308 0 404 250 24 40 chr9 4951671 4951795 -137319649 + L2 LINE L2 3151 3272 0 301 291 13 0 chr9 4951825 4951904 -137319540 - MIR3 SINE MIR -20 188 109 229 288 41 27 chr9 4951974 4952047 -137319397 - L2 LINE L2 -1 3312 3239 806 303 73 23 chr9 4952241 4952866 -137318578 - L2 LINE L2 -60 3253 2590 705 250 66 0 chr9 4953294 4953506 -137317938 - MER20B DNA MER1_type 0 783 558 1084 214 140 84 chr9 4953522 4953915 -137317529 - MER20B DNA MER1_type -366 417 3 216 336 136 18 chr9 4953969 4954079 -137317365 + L2 LINE L2 3145 3267 -5 21 0 0 0 chr9 4955850 4955871 -137315573 + AT_rich Low_complexity Low_complexity 1 21 0 2336 94 0 3 chr9 4957148 4957447 -137313997 - AluSx SINE Alu -14 298 1 1292 125 100 0 chr9 4957526 4957726 -137313718 + AluSg/x SINE Alu 84 303 -7 608 332 16 24 chr9 4957727 4957980 -137313464 - MIR SINE MIR -5 257 7 23 0 0 0 chr9 4958441 4958464 -137312980 + AT_rich Low_complexity Low_complexity 1 23 0 820 231 95 18 chr9 4958777 4958998 -137312446 + MIR SINE MIR 9 246 -16 180 349 35 35 chr9 4959349 4959435 -137312009 + MIR SINE MIR 45 130 -78 1772 240 41 7 chr9 4959465 4959878 -137311566 - L1ME1 LINE L1 -25 6141 5715 286 155 42 70 chr9 4959880 4959951 -137311493 + MIR SINE MIR 120 188 -74 402 115 0 0 chr9 4959962 4960023 -137311421 + (TA)n Simple_repeat Simple_repeat 2 62 0 606 258 145 14 chr9 4960241 4960462 -137310982 + MIR SINE MIR 13 262 0 24 0 0 0 chr9 4961021 4961045 -137310399 + AT_rich Low_complexity Low_complexity 1 24 0 1729 127 0 4 chr9 4961059 4961318 -137310126 + AluSx SINE Alu 34 291 -21 30 27 0 0 chr9 4961323 4961360 -137310084 + AT_rich Low_complexity Low_complexity 1 37 0 4123 100 32 12 chr9 4961364 4961965 -137309479 - L1MA3 LINE L1 -1 6304 5692 496 156 13 0 chr9 4962610 4962687 -137308757 - AluJ/FLAM SINE Alu -228 84 7 621 235 136 60 chr9 4962696 4963049 -137308395 - L1ME4a LINE L1 0 6121 5742 1282 223 143 61 chr9 4963054 4963777 -137307667 - LTR50 LTR ERVL 0 795 14 257 150 0 0 chr9 4963849 4963889 -137307555 - L1ME4a LINE L1 -459 5662 5623 2397 85 0 0 chr9 4965024 4965319 -137306125 - AluSx SINE Alu -9 303 9 425 222 163 0 chr9 4965355 4965490 -137305954 + L1ME4a LINE L1 5964 6120 -1 1656 196 3 7 chr9 4965918 4966219 -137305225 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr9 4966219 4966241 -137305203 + AT_rich Low_complexity Low_complexity 1 22 0 884 231 100 9 chr9 4966519 4966748 -137304696 - MIR SINE MIR -12 250 1 1581 209 3 0 chr9 4966847 4967134 -137304310 - AluJo SINE Alu -20 292 5 2239 117 3 0 chr9 4967349 4967647 -137303797 + AluSg SINE Alu 1 299 -11 838 182 69 19 chr9 4967953 4968112 -137303332 - AluJo SINE Alu -24 288 122 1460 194 3 26 chr9 4968251 4968555 -137302889 - AluJo SINE Alu -15 297 1 2103 99 18 7 chr9 4968562 4968844 -137302600 - AluSx SINE Alu -27 285 1 762 179 0 30 chr9 4969126 4969260 -137302184 + FLAM_C SINE Alu 2 131 -2 22 0 0 0 chr9 4970469 4970491 -137300953 + AT_rich Low_complexity Low_complexity 1 22 0 339 293 75 45 chr9 4970905 4971038 -137300406 - L2 LINE L2 0 3272 3136 367 231 95 27 chr9 4971039 4971186 -137300258 + L1ME4a LINE L1 5713 5869 -252 514 269 99 13 chr9 4971258 4971444 -137300000 + L1ME4a LINE L1 5443 5657 -505 679 213 28 0 chr9 4971447 4971588 -137299856 + Charlie1 DNA MER1_type 5 149 -2612 * 1365 141 71 24 chr9 4971583 4971880 -137299564 + Charlie1 DNA MER1_type 2420 2730 -31 1137 154 135 5 chr9 4971986 4972194 -137299250 + MER46A DNA MER2_type 2 236 0 292 258 54 21 chr9 4972617 4972710 -137298734 + L1ME4a LINE L1 5956 6051 -70 33 25 0 0 chr9 4972733 4972773 -137298671 + AT_rich Low_complexity Low_complexity 1 40 0 1899 159 28 0 chr9 4972922 4973211 -137298233 - AluJo SINE Alu -15 297 1 622 244 73 6 chr9 4973429 4973593 -137297851 - MIR SINE MIR -3 259 85 410 206 20 0 chr9 4973879 4973981 -137297463 + CT-rich Low_complexity Low_complexity 1 104 0 2118 144 0 3 chr9 4974003 4974315 -137297129 - AluJo SINE Alu -1 311 1 1648 179 16 52 chr9 4974766 4975055 -137296389 - MER4D LTR ERV1 0 903 628 1890 174 26 0 chr9 4975055 4975359 -137296085 + AluJo SINE Alu 1 312 0 1648 179 16 52 chr9 4975359 4975432 -137296012 - MER4D LTR ERV1 -275 628 554 1781 147 35 7 chr9 4975452 4975738 -137295706 - MER49 LTR ERV1 -629 294 1 421 324 7 7 chr9 4975824 4975966 -137295478 + MIR SINE MIR 61 202 -60 1942 181 86 49 chr9 4975966 4976452 -137294992 - LTR54 LTR ERV1 0 510 7 263 333 79 8 chr9 4976726 4976852 -137294592 + MIR SINE MIR 48 182 -80 1305 189 58 0 chr9 4977353 4977635 -137293809 - AluJo SINE Alu 0 306 10 1179 233 78 33 chr9 4977636 4978076 -137293368 + LTR56 LTR ERV1 8 610 0 227 77 0 26 chr9 4978094 4978133 -137293311 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2298 69 24 3 chr9 4978155 4978445 -137292999 + AluSq SINE Alu 1 296 -17 1774 104 150 0 chr9 4978826 4979086 -137292358 - AluSx SINE Alu -2 300 2 182 196 62 93 chr9 4979112 4979209 -137292235 - MIR SINE MIR -70 192 99 1520 95 60 0 chr9 4979655 4979887 -137291557 - L1MA8 LINE L1 -4 6287 6042 1100 124 12 6 chr9 4979934 4980103 -137291341 - AluSg/x SINE Alu -16 294 125 192 324 0 15 chr9 4980205 4980273 -137291171 + L2 LINE L2 2673 2739 -575 2343 102 0 6 chr9 4980330 4980644 -137290800 - AluSx SINE Alu 0 312 1 343 351 38 15 chr9 4980974 4981105 -137290339 + MER5A DNA MER1_type 8 141 -48 1591 176 0 25 chr9 4981114 4981393 -137290051 + AluJb SINE Alu 1 272 -40 2081 108 0 0 chr9 4981547 4981826 -137289618 + AluY SINE Alu 1 279 -32 317 130 0 87 chr9 4983170 4983239 -137288205 + L1MC4 LINE L1 6471 6533 -1509 1230 172 102 19 chr9 4983239 4983495 -137287949 + AluJo SINE Alu 17 293 -19 495 261 41 60 chr9 4983496 4983714 -137287730 + L1MC4 LINE L1 6534 6747 -1295 24 0 0 0 chr9 4983726 4983750 -137287694 + AT_rich Low_complexity Low_complexity 1 24 0 1761 114 0 0 chr9 4983762 4983989 -137287455 + AluSg SINE Alu 1 227 -83 509 311 0 7 chr9 4984145 4984293 -137287151 + (CA)n Simple_repeat Simple_repeat 1 147 0 455 295 1 0 chr9 4984312 4985228 -137286216 + (CA)n Simple_repeat Simple_repeat 1 917 0 372 294 0 0 chr9 4985260 4985678 -137285766 + (CA)n Simple_repeat Simple_repeat 1 418 0 2269 110 7 0 chr9 4986375 4986683 -137284761 + AluSx SINE Alu 1 310 -2 1757 173 7 19 chr9 4986831 4987138 -137284306 - AluJb SINE Alu -9 303 1 849 232 170 26 chr9 4987237 4987639 -137283805 + MLT1K LTR MaLR 20 551 -37 438 296 46 15 chr9 4987793 4987989 -137283455 - MIR SINE MIR 0 262 61 1615 177 23 23 chr9 4988090 4988389 -137283055 + AluJo SINE Alu 1 299 -13 502 223 234 5 chr9 4988451 4988648 -137282796 - MIR SINE MIR 0 262 21 1840 173 127 0 chr9 4989002 4989325 -137282119 + MER47A DNA MER2_type 3 366 0 339 248 19 38 chr9 4989669 4989774 -137281670 + MLT1K LTR MaLR 459 561 -27 201 179 26 0 chr9 4990758 4990797 -137280647 + GA-rich Low_complexity Low_complexity 2 41 0 756 239 68 27 chr9 4990916 4991179 -137280265 + MLT2D LTR ERVL 1 274 -140 1994 112 20 7 chr9 4991228 4991523 -137279921 + AluSx SINE Alu 1 299 -13 2003 131 3 20 chr9 4991846 4992151 -137279293 + AluJo SINE Alu 1 300 -12 2078 128 21 0 chr9 4992571 4992861 -137278583 + AluSq SINE Alu 2 297 -16 1674 107 149 0 chr9 4993239 4993501 -137277943 - AluSx SINE Alu 0 302 2 1459 95 60 0 chr9 4994070 4994302 -137277142 - L1MA8 LINE L1 -4 6287 6042 1130 120 13 0 chr9 4994349 4994507 -137276937 - AluSg/x SINE Alu -16 294 135 2327 103 0 6 chr9 4994745 4995057 -137276387 - AluSx SINE Alu -2 310 1 325 344 38 15 chr9 4995387 4995518 -137275926 + MER5A DNA MER1_type 8 141 -48 1562 179 0 25 chr9 4995527 4995806 -137275638 + AluJb SINE Alu 1 272 -40 2081 108 0 0 chr9 4995960 4996239 -137275205 + AluY SINE Alu 1 279 -32 317 130 0 87 chr9 4997583 4997652 -137273792 + L1MC4 LINE L1 6471 6533 -1509 1213 176 102 19 chr9 4997652 4997908 -137273536 + AluJo SINE Alu 17 293 -19 495 261 41 60 chr9 4997909 4998127 -137273317 + L1MC4 LINE L1 6534 6747 -1295 24 0 0 0 chr9 4998139 4998163 -137273281 + AT_rich Low_complexity Low_complexity 1 24 0 2215 118 0 13 chr9 4998175 4998489 -137272955 + AluSg SINE Alu 1 310 0 306 347 0 0 chr9 4998585 4998683 -137272761 + L1MC/D LINE L1 5465 5562 -2246 369 109 0 0 chr9 4998687 4998742 -137272702 + MLT2B1 LTR ERVL 1 55 -465 1335 143 0 46 chr9 4998748 4998965 -137272479 + AluJb SINE Alu 1 207 -105 1913 162 0 20 chr9 4999320 4999623 -137271821 + AluSq SINE Alu 1 297 -16 2520 184 89 7 chr9 4999735 5000310 -137271134 - L1MB7 LINE L1 -76 6108 5487 1830 131 3 91 chr9 5000310 5000639 -137270805 - AluSx SINE Alu -12 300 1 5732 178 47 6 chr9 5000656 5001686 -137269758 + L1MA2 LINE L1 5 1076 -6489 315 203 0 0 chr9 5001702 5001771 -137269673 + T-rich Low_complexity Low_complexity 1 69 0 5937 174 30 85 chr9 5002538 5003390 -137268054 + L1MA2 LINE L1 1081 1978 -5745 2342 101 14 0 chr9 5003390 5003686 -137267758 - AluSx SINE Alu -12 300 1 5937 174 30 85 chr9 5003686 5004064 -137267380 + L1MA2 LINE L1 1978 2375 -5348 2282 114 0 3 chr9 5004064 5004371 -137267073 - AluSx SINE Alu -6 306 1 5937 174 30 85 chr9 5004371 5005666 -137265778 + L1MA2 LINE L1 2375 3739 -3984 2794 73 0 8 chr9 5005666 5006035 -137265409 + L1PA8 LINE L1 5807 6172 0 5937 174 30 85 chr9 5006035 5006417 -137265027 + L1MA2 LINE L1 3739 4140 -3583 2627 90 0 37 chr9 5006417 5006722 -137264722 + THE1B LTR MaLR 1 291 -73 2235 119 0 0 chr9 5006722 5007025 -137264419 - AluSg SINE Alu -7 303 1 2627 90 0 37 chr9 5007025 5007097 -137264347 + THE1B LTR MaLR 291 364 0 5937 174 30 85 chr9 5007097 5008699 -137262745 + L1MA2 LINE L1 4140 5828 -1895 1712 158 92 0 chr9 5008699 5008971 -137262473 - AluSx SINE Alu -15 297 1 5937 174 30 85 chr9 5008971 5009127 -137262317 + L1MA2 LINE L1 5828 5991 -1732 1653 151 45 34 chr9 5009127 5009418 -137262026 + AluJb SINE Alu 11 304 -8 5937 174 30 85 chr9 5009418 5010026 -137261418 + L1MA2 LINE L1 5991 6631 -1092 1311 140 0 0 chr9 5010026 5010212 -137261232 + AluSg/x SINE Alu 125 310 -2 5937 174 30 85 chr9 5010212 5011575 -137259869 + L1MA2 LINE L1 6631 7723 0 2209 150 0 0 chr9 5011580 5011941 -137259503 + L1 LINE L1 4644 5004 -1142 1303 198 68 0 chr9 5011941 5012178 -137259266 + AluJb SINE Alu 1 253 -59 1992 158 0 0 chr9 5013801 5014099 -137257345 + AluJo SINE Alu 1 298 -14 699 290 45 0 chr9 5014385 5014606 -137256838 + MIR SINE MIR 32 262 0 269 323 91 5 chr9 5014610 5014796 -137256648 - L1M4 LINE L1 -1010 5136 4935 2120 113 0 10 chr9 5014918 5015210 -137256234 + AluSx SINE Alu 18 306 -6 27 87 0 0 chr9 5015538 5015607 -137255837 + AT_rich Low_complexity Low_complexity 1 69 0 33150 100 12 59 chr9 5015617 5022071 -137249373 + L1PA7 LINE L1 12 6153 -1 295 264 0 11 chr9 5022773 5022860 -137248584 - L1MDb LINE L1 -5432 977 892 22 0 0 0 chr9 5022903 5022925 -137248519 + AT_rich Low_complexity Low_complexity 1 22 0 747 238 165 79 chr9 5023157 5023689 -137247755 + MLT1L LTR MaLR 4 580 -8 279 221 44 15 chr9 5023795 5023863 -137247581 - L2 LINE L2 -13 3300 3231 587 317 96 30 chr9 5023917 5024585 -137246859 - L2 LINE L2 -226 3046 2334 308 265 65 37 chr9 5024593 5024808 -137246636 - L1MC4 LINE L1 -1 8041 7821 1682 192 13 37 chr9 5024841 5025060 -137246384 - L1ME2 LINE L1 -10 6154 5936 1156 256 62 41 chr9 5025060 5025908 -137245536 - L1MB2 LINE L1 -224 6341 1476 257 0 30 0 chr9 5025910 5025943 -137245501 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 842 206 0 0 chr9 5025948 5026094 -137245350 - FRAM SINE Alu -30 146 1 748 211 34 96 chr9 5026099 5026507 -137244937 - L1ME LINE L1 -5136 934 552 251 111 0 22 chr9 5026919 5026964 -137244480 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 490 243 18 0 chr9 5026972 5027083 -137244361 + MER103 DNA DNA 8 120 -46 1377 170 88 28 chr9 5027112 5027395 -137244049 - AluJb SINE Alu -12 300 1 265 204 174 51 chr9 5027575 5027673 -137243771 + MIR SINE MIR 21 130 -78 2148 121 0 7 chr9 5028640 5028937 -137242507 - AluSx SINE Alu -17 295 1 272 279 52 10 chr9 5029409 5029575 -137241869 - LTR16C LTR ERVL -269 222 2 414 280 95 11 chr9 5030297 5030515 -137240929 + MLT1H LTR MaLR 62 334 -215 5116 63 38 0 chr9 5030592 5031227 -137240217 - PABL_A LTR ERV1 -1 659 1 220 221 103 29 chr9 5031462 5031530 -137239914 + MER5A DNA MER1_type 1 73 -116 478 207 78 17 chr9 5031532 5031648 -137239796 + L1ME2 LINE L1 5700 5822 -344 1175 127 0 0 chr9 5031648 5031813 -137239631 - AluSg/x SINE Alu -14 298 134 1175 213 63 72 chr9 5031813 5032161 -137239283 + L1ME2 LINE L1 5819 6163 -1 1951 121 34 14 chr9 5032224 5032521 -137238923 - AluJb SINE Alu -9 303 1 270 250 18 71 chr9 5032559 5032671 -137238773 + LTR67 LTR ERVL 32 190 -367 2256 105 0 0 chr9 5032893 5033187 -137238257 + AluSq SINE Alu 6 299 -14 409 260 57 24 chr9 5033209 5033332 -137238112 + L2 LINE L2 3182 3308 -5 1753 160 21 63 chr9 5033697 5034078 -137237366 + MLT1A1 LTR MaLR 1 365 0 289 243 97 29 chr9 5034588 5034691 -137236753 + MIR SINE MIR 152 261 -1 288 309 78 123 chr9 5034886 5035245 -137236199 - L2 LINE L2 -13 3259 2917 291 140 0 0 chr9 5035269 5035319 -137236125 + (TG)n Simple_repeat Simple_repeat 2 51 0 254 292 43 75 chr9 5035396 5035557 -137235887 + MIR3 SINE MIR 17 172 -36 859 257 61 39 chr9 5036113 5036393 -137235051 + MLT1K LTR MaLR 138 423 -165 265 107 18 36 chr9 5036420 5036476 -137234968 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 248 152 0 22 chr9 5036559 5036605 -137234839 + HSMAR1 DNA Mariner 1 45 -1242 2261 109 0 22 chr9 5036640 5036960 -137234484 - AluSq SINE Alu 0 313 1 234 250 0 0 chr9 5036978 5037026 -137234418 + MLT1K LTR MaLR 524 571 -17 2106 184 37 31 chr9 5037223 5037679 -137233765 + MLT1C LTR MaLR 3 461 -6 196 289 111 11 chr9 5039357 5039447 -137231997 - L2 LINE L2 -33 3239 3141 495 274 169 10 chr9 5039591 5039792 -137231652 - L1ME LINE L1 -307 5814 5582 1728 199 3 0 chr9 5040054 5040341 -137231103 + AluJb SINE Alu 1 288 -24 26 0 0 0 chr9 5040422 5040448 -137230996 + AT_rich Low_complexity Low_complexity 1 26 0 246 132 0 0 chr9 5042343 5042396 -137229048 + (TTTTA)n Simple_repeat Simple_repeat 4 56 0 2209 129 3 0 chr9 5042411 5042722 -137228722 - AluSx SINE Alu 0 312 1 329 274 133 0 chr9 5042800 5042935 -137228509 - MARNA DNA Mariner -199 387 235 979 112 0 42 chr9 5043175 5043318 -137228126 + AluJo SINE Alu 6 142 -170 271 62 0 0 chr9 5043318 5043350 -137228094 + AluSp/q SINE Alu 219 250 -53 1034 210 0 40 chr9 5043350 5043574 -137227870 + AluJo SINE Alu 85 299 -13 1885 211 25 3 chr9 5043998 5044354 -137227090 - MLT1A1 LTR MaLR -1 364 1 217 248 186 18 chr9 5044519 5044632 -137226812 + MIR3 SINE MIR 28 159 -49 764 292 65 27 chr9 5044804 5045322 -137226122 + MLT1K LTR MaLR 13 580 -8 730 20 41 0 chr9 5046137 5046235 -137225209 + (AATAG)n Simple_repeat Simple_repeat 3 104 0 1820 176 0 0 chr9 5046255 5046550 -137224894 + AluJo SINE Alu 1 295 -17 1864 152 13 23 chr9 5047753 5048062 -137223382 + AluJo SINE Alu 1 306 -6 299 253 137 11 chr9 5048198 5048293 -137223151 + MER103 DNA DNA 1 107 -59 2089 127 10 7 chr9 5048637 5048928 -137222516 - AluSq SINE Alu -21 292 1 221 245 0 0 chr9 5048995 5049044 -137222400 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 2110 107 17 3 chr9 5049062 5049351 -137222093 + AluSg SINE Alu 1 293 -17 2002 100 0 8 chr9 5049558 5049817 -137221627 + AluSq SINE Alu 9 265 -48 243 88 0 0 chr9 5049949 5049983 -137221461 + (A)n Simple_repeat Simple_repeat 1 34 0 603 316 30 6 chr9 5050392 5050560 -137220884 + MLT1K LTR MaLR 2 173 -415 22 35 0 0 chr9 5050604 5050633 -137220811 + AT_rich Low_complexity Low_complexity 1 29 0 188 229 29 57 chr9 5050691 5050761 -137220683 - MIR SINE MIR -63 145 78 277 100 0 0 chr9 5050891 5050931 -137220513 - FRAM/FAM SINE Alu -93 82 43 385 250 136 15 chr9 5050931 5051063 -137220381 + MLT1K LTR MaLR 421 568 -20 235 259 151 0 chr9 5051179 5051318 -137220126 - MIR SINE MIR -6 256 89 252 272 160 0 chr9 5051902 5052027 -137219417 - MIR SINE MIR -115 147 3 549 201 86 65 chr9 5052425 5052564 -137218880 + FLAM_C SINE Alu 1 142 -1 1102 113 6 0 chr9 5054478 5054637 -137216807 + L1PA10 LINE L1 6008 6167 -1 962 164 53 0 chr9 5054694 5054846 -137216598 + FRAM SINE Alu 1 155 -21 1763 201 105 62 chr9 5055797 5056383 -137215061 + MLT1E2 LTR MaLR 1 624 0 1203 246 163 12 chr9 5056666 5057065 -137214379 + LTR40c LTR ERVL 6 464 -1 28 61 0 0 chr9 5058040 5058089 -137213355 + AT_rich Low_complexity Low_complexity 1 49 0 675 164 9 0 chr9 5058344 5058454 -137212990 - FLAM_A SINE Alu -13 129 19 442 269 32 106 chr9 5058615 5058897 -137212547 - L2 LINE L2 -7 3306 3046 325 138 35 0 chr9 5059395 5059453 -137211991 - MER5B DNA MER1_type -3 175 116 2229 187 52 23 chr9 5059453 5059977 -137211467 + L1MB8 LINE L1 4788 5326 -820 418 184 41 19 chr9 5059983 5060224 -137211220 + AluJo SINE Alu 4 301 -11 4362 164 23 26 chr9 5060234 5061079 -137210365 + L1MB8 LINE L1 5336 6177 -1 2497 75 7 0 chr9 5063074 5063381 -137208063 - AluSg SINE Alu -1 309 1 2504 57 7 0 chr9 5064535 5064831 -137206613 + AluY SINE Alu 1 298 -13 671 258 56 56 chr9 5064832 5065065 -137206379 + MIR SINE MIR 8 240 -22 25 75 0 0 chr9 5065158 5065211 -137206233 + AT_rich Low_complexity Low_complexity 1 53 0 321 157 0 0 chr9 5065320 5065371 -137206073 + MER66A LTR ERV1 287 337 -141 206 333 81 9 chr9 5065558 5065669 -137205775 - MIR SINE MIR -123 139 21 2380 75 0 3 chr9 5065975 5066270 -137205174 + AluY SINE Alu 1 294 -17 231 36 0 0 chr9 5067645 5067673 -137203771 + (A)n Simple_repeat Simple_repeat 1 28 0 2077 111 31 0 chr9 5070978 5071267 -137200177 + AluSx SINE Alu 2 299 -13 443 274 127 6 chr9 5073043 5073200 -137198244 + Charlie8 DNA MER1_type 110 285 -2132 240 319 118 0 chr9 5075459 5075578 -137195866 - MIR SINE MIR -6 256 124 301 270 60 60 chr9 5075934 5076149 -137195295 + L1MC4 LINE L1 7809 8023 -19 28 29 0 0 chr9 5076283 5076318 -137195126 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr9 5077073 5077102 -137194342 + AT_rich Low_complexity Low_complexity 1 29 0 612 294 63 25 chr9 5079031 5079269 -137192175 + MIR SINE MIR 13 259 -3 241 307 0 13 chr9 5079307 5079382 -137192062 - Charlie4 DNA MER1_type 0 1961 1888 253 242 129 40 chr9 5080836 5080960 -137190484 + L1MC/D LINE L1 5689 5823 -1985 182 288 0 15 chr9 5082469 5082535 -137188909 - MIR SINE MIR -183 79 15 504 284 95 9 chr9 5083239 5083450 -137187994 + MIR SINE MIR 18 246 -16 25 0 0 0 chr9 5083707 5083732 -137187712 + AT_rich Low_complexity Low_complexity 1 25 0 272 319 0 0 chr9 5084696 5084790 -137186654 + MIR SINE MIR 169 262 0 217 345 115 0 chr9 5085195 5085334 -137186110 + MIR SINE MIR 61 215 -47 2482 76 7 0 chr9 5085373 5085675 -137185769 - AluSc SINE Alu -5 304 1 316 294 59 64 chr9 5086186 5086373 -137185071 + MIR3 SINE MIR 12 197 -11 1257 159 34 0 chr9 5086519 5086727 -137184717 + AluJo SINE Alu 86 300 -12 397 242 47 8 chr9 5087096 5087224 -137184220 + MIR3 SINE MIR 62 194 -14 524 289 13 0 chr9 5088231 5088383 -137183061 - MER102a DNA MER1_type 0 330 177 194 125 0 25 chr9 5088468 5088508 -137182936 + (CCA)n Simple_repeat Simple_repeat 3 41 0 21 0 0 0 chr9 5089428 5089449 -137181995 + AT_rich Low_complexity Low_complexity 1 21 0 2366 46 70 0 chr9 5090015 5090300 -137181144 - AluY SINE Alu -6 305 1 357 82 0 0 chr9 5090424 5090473 -137180971 + (CA)n Simple_repeat Simple_repeat 1 49 0 1270 167 58 109 chr9 5091946 5092257 -137179187 - AluJb SINE Alu -17 295 1 628 135 162 18 chr9 5092262 5092373 -137179071 - FLAM_C SINE Alu -5 128 2 381 175 0 0 chr9 5092391 5092448 -137178996 - AluJ/FLAM SINE Alu -244 58 2 1324 183 117 11 chr9 5093022 5093295 -137178149 + AluSx SINE Alu 1 302 -10 471 261 11 50 chr9 5093636 5093816 -137177628 + L1MC4a LINE L1 5710 5882 -1926 198 0 0 0 chr9 5094901 5094923 -137176521 + (A)n Simple_repeat Simple_repeat 1 22 0 30 0 0 0 chr9 5095340 5095370 -137176074 + AT_rich Low_complexity Low_complexity 1 30 0 1776 152 24 20 chr9 5095371 5095667 -137175777 - AluJo SINE Alu -13 299 3 228 283 0 0 chr9 5095688 5095734 -137175710 + polypurine Low_complexity Low_complexity 4 49 0 822 246 26 26 chr9 5096232 5096427 -137175017 + MSTD LTR MaLR 1 195 -201 615 237 0 8 chr9 5096429 5096560 -137174884 + FLAM_A SINE Alu 4 133 -9 992 213 29 24 chr9 5096562 5096769 -137174675 + MSTD LTR MaLR 187 394 -2 291 330 9 9 chr9 5096826 5096932 -137174512 - MIR SINE MIR -135 127 22 659 244 8 0 chr9 5096932 5097063 -137174381 - FLAM_C SINE Alu -1 132 1 317 330 84 6 chr9 5097164 5097343 -137174101 - MER112 DNA MER1_type -18 242 50 497 116 16 132 chr9 5098292 5098377 -137173067 - L1PB4 LINE L1 0 6156 6063 189 0 0 0 chr9 5098377 5098398 -137173046 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2348 49 0 0 chr9 5098398 5098664 -137172780 - AluSc SINE Alu -29 280 15 497 116 16 132 chr9 5098664 5098706 -137172738 - L1PB4 LINE L1 -91 6065 6043 252 163 23 0 chr9 5098839 5098882 -137172562 - MER1B DNA MER1_type 0 329 286 978 163 0 18 chr9 5098882 5099048 -137172396 + MER1B DNA MER1_type 122 284 -55 23 0 0 0 chr9 5099241 5099264 -137172180 + AT_rich Low_complexity Low_complexity 1 23 0 2113 111 30 3 chr9 5099306 5099604 -137171840 - AluSc SINE Alu -3 306 1 21 0 0 0 chr9 5099810 5099831 -137171613 + AT_rich Low_complexity Low_complexity 1 21 0 2342 107 0 0 chr9 5099984 5100292 -137171152 + AluSq SINE Alu 1 308 -5 1925 119 0 80 chr9 5100408 5100745 -137170699 + AluJb SINE Alu 1 310 -2 25 51 0 0 chr9 5100821 5100860 -137170584 + AT_rich Low_complexity Low_complexity 1 39 0 203 138 0 0 chr9 5102336 5102365 -137169079 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 554 175 143 0 chr9 5102819 5102945 -137168499 + MIR SINE MIR 13 156 -106 2322 102 7 3 chr9 5103519 5103822 -137167622 - AluSx SINE Alu -6 306 3 389 221 14 83 chr9 5104203 5104348 -137167096 - MIR SINE MIR -71 191 57 564 278 125 33 chr9 5104440 5105005 -137166439 - L2 LINE L2 -2 3270 2646 250 302 63 45 chr9 5105086 5105308 -137166136 - MIR SINE MIR -13 249 24 636 206 58 5 chr9 5106047 5106148 -137165296 - MER5C DNA MER1_type -50 274 180 1617 131 21 100 chr9 5106148 5106477 -137164967 - AluYb8 SINE Alu -15 303 1 636 206 58 5 chr9 5106477 5106564 -137164880 - MER5C DNA MER1_type -144 180 76 369 189 131 143 chr9 5106878 5107053 -137164391 + MER106B DNA MER1_type 7 1002 -57 1035 184 9 55 chr9 5107597 5107661 -137163783 - MER3 DNA MER1_type -1 208 143 909 119 0 15 chr9 5107661 5107795 -137163649 + FLAM_C SINE Alu 1 132 -1 1035 184 9 55 chr9 5107795 5107947 -137163497 - MER3 DNA MER1_type -66 143 2 624 242 55 28 chr9 5107978 5108160 -137163284 + MIR SINE MIR 2 188 -74 246 254 0 0 chr9 5108192 5108251 -137163193 + (TTA)n Simple_repeat Simple_repeat 2 60 0 322 313 37 12 chr9 5110439 5110602 -137160842 + L1ME4a LINE L1 5736 5902 -219 21 71 0 0 chr9 5110736 5110778 -137160666 + AT_rich Low_complexity Low_complexity 1 42 0 2124 124 3 0 chr9 5110871 5111175 -137160269 + AluSx SINE Alu 1 305 0 1400 148 14 9 chr9 5111766 5111982 -137159462 + AluSx SINE Alu 1 217 -95 23 33 0 0 chr9 5112064 5112094 -137159350 + AT_rich Low_complexity Low_complexity 1 30 0 745 125 8 33 chr9 5112094 5112214 -137159230 - FLAM_C SINE Alu -16 117 1 2443 91 0 10 chr9 5112222 5112530 -137158914 - AluSx SINE Alu -7 305 1 2556 38 3 10 chr9 5112788 5113101 -137158343 - L1PA2 LINE L1 -215 5940 5630 1816 33 0 0 chr9 5113076 5113288 -137158156 + L1PA2 LINE L1 5944 6155 0 * 435 287 172 4 chr9 5113773 5114017 -137157427 - L3 LINE CR1 -45 1532 1248 299 354 35 0 chr9 5113988 5114101 -137157343 + L3 LINE CR1 1237 1353 -224 * 231 146 0 0 chr9 5114243 5114284 -137157160 + (CA)n Simple_repeat Simple_repeat 2 42 0 508 256 34 0 chr9 5114664 5114781 -137156663 + MER45A DNA AcHobo 58 178 0 1941 132 170 16 chr9 5115497 5115868 -137155576 - MSTA LTR MaLR 0 428 1 866 132 0 22 chr9 5116727 5116863 -137154581 + FLAM_C SINE Alu 6 138 -5 22 35 0 0 chr9 5117439 5117468 -137153976 + AT_rich Low_complexity Low_complexity 1 29 0 3364 176 15 45 chr9 5117992 5118298 -137153146 - MER82 DNA MER2_type 0 653 339 1849 168 7 0 chr9 5118298 5118589 -137152855 + AluJo SINE Alu 5 297 -15 1623 157 95 4 chr9 5118595 5118869 -137152575 + AluJo SINE Alu 1 299 -13 3364 176 15 45 chr9 5118869 5119226 -137152218 - MER82 DNA MER2_type -319 334 3 1002 254 29 41 chr9 5119339 5119681 -137151763 - MER46C DNA MER2_type 0 338 1 345 258 31 21 chr9 5119976 5120073 -137151371 - L2 LINE L2 -9 3263 3166 2348 95 3 0 chr9 5120533 5120827 -137150617 - AluSx SINE Alu -17 295 1 1035 126 16 60 chr9 5120912 5121094 -137150350 + FRAM SINE Alu 1 168 -8 2852 66 56 13 chr9 5121135 5121531 -137149913 + L1PA12 LINE L1 5741 6153 -15 2190 108 0 3 chr9 5121550 5121864 -137149580 + AluSx SINE Alu 1 313 0 1909 166 0 7 chr9 5122703 5123005 -137148439 - AluJb SINE Alu -12 300 1 264 256 51 34 chr9 5123461 5123578 -137147866 + MIR SINE MIR 94 212 -50 187 296 43 62 chr9 5125720 5125882 -137145562 - L2 LINE L2 -181 3091 2933 225 338 39 26 chr9 5127295 5127449 -137143995 - L2 LINE L2 -178 3094 2939 2312 99 3 0 chr9 5127636 5127930 -137143514 - AluSx SINE Alu -16 296 2 338 304 181 24 chr9 5127931 5128312 -137143132 - L2 LINE L2 -601 2713 2273 567 255 87 10 chr9 5128376 5128572 -137142872 + MIR SINE MIR 43 253 -9 417 301 56 4 chr9 5128570 5128819 -137142625 - L2 LINE L2 -1114 2200 1939 * 230 143 57 0 chr9 5128891 5128926 -137142518 - MER3 DNA MER1_type -2 207 171 * 436 171 98 0 chr9 5128911 5128993 -137142451 - MER3 DNA MER1_type -118 91 2 1806 174 0 32 chr9 5130095 5130411 -137141033 + AluJb SINE Alu 1 306 -6 2017 148 0 0 chr9 5130455 5130752 -137140692 + AluJb SINE Alu 1 297 -15 459 0 0 0 chr9 5130758 5130809 -137140635 + (TG)n Simple_repeat Simple_repeat 2 52 0 258 215 0 0 chr9 5130874 5130953 -137140491 + (TAG)n Simple_repeat Simple_repeat 2 80 0 277 300 0 0 chr9 5130954 5131034 -137140410 + (CAG)n Simple_repeat Simple_repeat 1 80 0 575 66 0 0 chr9 5131055 5131131 -137140313 - L1PA8 LINE L1 -2 6170 6095 562 302 74 23 chr9 5131142 5131357 -137140087 - MIR SINE MIR -15 247 22 645 298 41 5 chr9 5133732 5133950 -137137494 + MIR SINE MIR 25 250 -12 270 0 0 0 chr9 5134010 5134040 -137137404 + (TC)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chr9 5134039 5134069 -137137375 + (CA)n Simple_repeat Simple_repeat 1 30 0 207 69 0 0 chr9 5136370 5136399 -137135045 + (TA)n Simple_repeat Simple_repeat 1 29 0 1640 204 3 0 chr9 5137721 5138015 -137133429 - AluJb SINE Alu -12 300 6 1813 162 13 7 chr9 5138211 5138514 -137132930 + AluJb SINE Alu 1 305 -7 374 332 101 5 chr9 5139218 5139426 -137132018 + MIR SINE MIR 28 255 -7 2200 108 0 0 chr9 5140094 5140380 -137131064 - AluSx SINE Alu -26 286 1 2420 90 0 0 chr9 5142189 5142490 -137128954 + AluSx SINE Alu 1 301 -11 637 228 124 5 chr9 5142535 5142737 -137128707 - MIR SINE MIR -22 240 15 953 197 95 61 chr9 5142836 5143100 -137128344 + L1MA10 LINE L1 6062 6334 0 628 226 92 36 chr9 5143121 5143314 -137128130 - MIR SINE MIR -21 241 38 230 280 66 117 chr9 5143663 5144348 -137127096 + L2 LINE L2 1745 2394 -920 2336 69 13 10 chr9 5144363 5144667 -137126777 - AluY SINE Alu -5 306 2 901 254 42 5 chr9 5147114 5147327 -137124117 - MIR SINE MIR 0 262 42 820 146 7 42 chr9 5147331 5147475 -137123969 + FLAM_C SINE Alu 5 143 0 450 0 0 0 chr9 5147476 5147526 -137123918 + (CA)n Simple_repeat Simple_repeat 2 51 0 2190 135 5 53 chr9 5149072 5149451 -137121993 - MER46B DNA MER2_type 0 236 1 217 180 0 66 chr9 5149496 5149557 -137121887 + T-rich Low_complexity Low_complexity 3 59 0 2128 165 46 6 chr9 5149654 5150005 -137121439 - MLT1A1 LTR MaLR 0 365 1 258 106 0 0 chr9 5150617 5150664 -137120780 + (GA)n Simple_repeat Simple_repeat 1 47 0 262 213 197 57 chr9 5151148 5151270 -137120174 + MIR SINE MIR 81 219 -43 427 131 0 24 chr9 5151328 5151412 -137120032 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 691 191 27 48 chr9 5152946 5153093 -137118351 + MIR SINE MIR 64 207 -55 2257 107 17 0 chr9 5153306 5153606 -137117838 + AluSg SINE Alu 1 305 -5 466 283 133 52 chr9 5153750 5154150 -137117294 - L2 LINE L2 -54 3259 2828 189 254 102 0 chr9 5154193 5154252 -137117192 - L3 LINE CR1 -324 1253 1189 784 163 16 8 chr9 5154574 5154703 -137116741 - FLAM_C SINE Alu -3 130 1 217 208 51 168 chr9 5155254 5155451 -137115993 + L2 LINE L2 2992 3165 -107 239 301 38 30 chr9 5155619 5155752 -137115692 + L1ME4a LINE L1 5795 5928 -193 291 263 66 46 chr9 5155760 5155912 -137115532 + L1ME4a LINE L1 5961 6115 -6 21 0 0 0 chr9 5155926 5155947 -137115497 + AT_rich Low_complexity Low_complexity 1 21 0 43573 32 24 1 chr9 5155956 5161968 -137109476 + L1PA3 LINE L1 2 6155 0 25 0 0 0 chr9 5161982 5162007 -137109437 + AT_rich Low_complexity Low_complexity 1 25 0 667 263 0 15 chr9 5162035 5162168 -137109276 - AluJo/FRAM SINE Alu -47 265 135 1413 183 141 8 chr9 5162168 5162430 -137109014 - AluJo SINE Alu -5 297 1 276 320 50 50 chr9 5162523 5162723 -137108721 + L2 LINE L2 2885 3084 -188 270 116 0 0 chr9 5162925 5162968 -137108476 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1969 152 7 7 chr9 5163102 5163412 -137108032 + AluSx SINE Alu 1 310 -2 1937 147 3 0 chr9 5163747 5164039 -137107405 - AluSx SINE Alu -19 293 1 482 237 21 0 chr9 5164791 5164888 -137106556 + MER81 DNA DNA 2 100 -14 22 0 0 0 chr9 5165421 5165443 -137106001 + AT_rich Low_complexity Low_complexity 1 22 0 180 255 21 0 chr9 5165657 5165704 -137105740 + L2 LINE L2 3225 3272 0 224 179 30 60 chr9 5166086 5166153 -137105291 - MIR SINE MIR -94 168 104 1828 145 24 17 chr9 5166153 5166442 -137105002 + AluJb SINE Alu 1 291 -21 212 270 54 14 chr9 5166462 5166536 -137104908 - MIR SINE MIR -93 115 39 2364 92 3 0 chr9 5166737 5167041 -137104403 - AluSp SINE Alu -8 305 1 529 246 36 0 chr9 5167453 5167563 -137103881 + MER81 DNA DNA 1 114 0 349 226 151 8 chr9 5167659 5167799 -137103645 + L1ME4a LINE L1 1194 6108 -13 2278 91 3 3 chr9 5169305 5169601 -137101843 - AluSx SINE Alu -3 309 14 785 196 141 0 chr9 5170539 5170702 -137100742 + MER5A DNA MER1_type 4 189 0 201 260 29 96 chr9 5170790 5170894 -137100550 + MIR SINE MIR 37 133 -75 1168 170 25 34 chr9 5171435 5171645 -137099799 + Charlie1 DNA MER1_type 1 210 -2551 2373 94 3 0 chr9 5171645 5171944 -137099500 - AluSp SINE Alu -13 300 1 1168 170 25 34 chr9 5171944 5171968 -137099476 + Charlie1 DNA MER1_type 210 233 -2528 647 188 38 0 chr9 5171957 5172090 -137099354 + Charlie1 DNA MER1_type 2619 2756 -5 * 312 311 75 12 chr9 5172760 5172921 -137098523 + L3b LINE CR1 1201 1371 -212 2415 73 0 0 chr9 5173154 5173471 -137097973 + AluSp SINE Alu 1 317 0 258 291 9 9 chr9 5174338 5174448 -137096996 + L1ME4a LINE L1 5817 5926 -195 2285 111 0 0 chr9 5174607 5174905 -137096539 + AluSx SINE Alu 6 303 -9 772 236 153 63 chr9 5176040 5176139 -137095305 + L1ME4a LINE L1 5623 5712 -409 1428 206 153 73 chr9 5176139 5176875 -137094569 + LTR50 LTR ERVL 1 795 0 772 236 153 63 chr9 5176875 5177233 -137094211 + L1ME4a LINE L1 5712 6121 0 496 156 13 0 chr9 5177242 5177319 -137094125 + AluJ/FLAM SINE Alu 7 84 -228 4123 100 32 12 chr9 5177964 5178565 -137092879 + L1MA3 LINE L1 5692 6304 -1 30 27 0 0 chr9 5178569 5178606 -137092838 + AT_rich Low_complexity Low_complexity 1 37 0 1729 127 0 4 chr9 5178611 5178870 -137092574 - AluSx SINE Alu -21 291 34 24 0 0 0 chr9 5178884 5178908 -137092536 + AT_rich Low_complexity Low_complexity 1 24 0 606 258 145 14 chr9 5179467 5179688 -137091756 - MIR SINE MIR 0 262 13 258 219 16 0 chr9 5179906 5179970 -137091474 + L1MC4 LINE L1 6655 6719 -1323 273 148 0 82 chr9 5179976 5180037 -137091407 - MIR SINE MIR -87 175 120 1772 240 41 7 chr9 5180039 5180452 -137090992 + L1ME1 LINE L1 5715 6141 -25 180 349 35 35 chr9 5180482 5180568 -137090876 - MIR SINE MIR -78 130 45 820 231 95 18 chr9 5180919 5181140 -137090304 - MIR SINE MIR -16 246 9 23 0 0 0 chr9 5181453 5181476 -137089968 + AT_rich Low_complexity Low_complexity 1 23 0 608 332 16 24 chr9 5181937 5182190 -137089254 + MIR SINE MIR 7 257 -5 1292 125 100 0 chr9 5182191 5182391 -137089053 - AluSg/x SINE Alu -7 305 86 2385 87 0 0 chr9 5182470 5182768 -137088676 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 5184045 5184066 -137087378 + AT_rich Low_complexity Low_complexity 1 21 0 216 336 136 18 chr9 5185837 5185947 -137085497 - L2 LINE L2 -5 3267 3145 1084 214 140 84 chr9 5186001 5186394 -137085050 + MER20B DNA MER1_type 3 417 -366 705 250 66 0 chr9 5186410 5186622 -137084822 + MER20B DNA MER1_type 558 783 0 806 303 73 23 chr9 5187050 5187675 -137083769 + L2 LINE L2 2590 3253 -60 229 288 41 27 chr9 5187868 5187941 -137083503 + L2 LINE L2 3239 3312 -1 301 291 13 0 chr9 5188011 5188090 -137083354 + MIR3 SINE MIR 109 188 -20 404 250 24 40 chr9 5188120 5188244 -137083200 - L2 LINE L2 0 3272 3151 2086 115 0 3 chr9 5188360 5188669 -137082775 - AluSq SINE Alu 0 308 1 1263 102 0 0 chr9 5188929 5189095 -137082349 - AluSg/x SINE Alu 0 310 145 531 340 15 15 chr9 5189105 5189302 -137082142 + MIR SINE MIR 32 228 -34 386 272 34 60 chr9 5189973 5190147 -137081297 - MIR SINE MIR -11 197 28 578 194 0 20 chr9 5191418 5191516 -137079928 + MER2 DNA MER2_type 2 97 -248 1432 168 31 8 chr9 5191573 5191829 -137079615 + MER2 DNA MER2_type 83 344 -1 1683 170 18 0 chr9 5191922 5192224 -137079220 - AluJb SINE Alu 0 307 1 2027 135 0 0 chr9 5193162 5193450 -137077994 - AluSg SINE Alu -10 300 13 1986 136 0 19 chr9 5193879 5194187 -137077257 + AluSx SINE Alu 1 302 -10 1272 166 89 76 chr9 5194221 5194523 -137076921 + AluJb SINE Alu 1 306 -6 252 0 0 0 chr9 5194815 5194843 -137076601 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 351 0 0 0 chr9 5194842 5194881 -137076563 + (CA)n Simple_repeat Simple_repeat 1 39 0 1118 170 71 20 chr9 5195063 5195316 -137076128 - MER58B DNA MER1_type 0 341 76 674 162 115 0 chr9 5195316 5195464 -137075980 + L1MB7 LINE L1 5572 5736 -448 2119 111 40 12 chr9 5195464 5195789 -137075655 - MSTC LTR MaLR 0 428 95 1991 182 43 0 chr9 5195789 5196157 -137075287 + L1MB7 LINE L1 5785 6168 -16 418 259 12 0 chr9 5196157 5196242 -137075202 - MER58B DNA MER1_type -252 89 4 198 0 0 0 chr9 5196280 5196302 -137075142 + (CA)n Simple_repeat Simple_repeat 2 23 0 25 51 0 0 chr9 5196359 5196398 -137075046 + AT_rich Low_complexity Low_complexity 1 39 0 198 71 0 0 chr9 5196775 5196803 -137074641 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2129 115 82 6 chr9 5196905 5197235 -137074209 + L1PA13 LINE L1 5808 6162 -1 2212 121 3 0 chr9 5197466 5197771 -137073673 + AluSx SINE Alu 1 306 -6 2079 147 0 0 chr9 5197992 5198291 -137073153 - AluSx SINE Alu -13 299 1 4880 93 10 42 chr9 5198519 5198574 -137072870 - L1PB1 LINE L1 0 6151 6096 2387 42 0 3 chr9 5198574 5198890 -137072554 + AluY SINE Alu 1 315 0 4880 93 10 42 chr9 5198890 5199219 -137072225 - L1PB1 LINE L1 -55 6096 5797 297 0 0 0 chr9 5199219 5199252 -137072192 + (CA)n Simple_repeat Simple_repeat 2 34 0 4880 93 10 42 chr9 5199252 5199575 -137071869 - L1PB1 LINE L1 -354 5797 5465 574 286 10 41 chr9 5199594 5199790 -137071654 - MIR SINE MIR -71 191 2 1064 210 8 8 chr9 5200545 5200812 -137070632 + L1MB7 LINE L1 3063 3329 -2817 1963 143 27 0 chr9 5200814 5200981 -137070463 - AluSx SINE Alu -10 302 122 459 0 0 0 chr9 5200981 5201032 -137070412 + (TG)n Simple_repeat Simple_repeat 2 52 0 1963 143 27 0 chr9 5201032 5201157 -137070287 - AluSx SINE Alu -190 122 2 953 205 0 0 chr9 5201167 5201333 -137070111 - AluJb SINE Alu -20 292 127 8144 181 67 34 chr9 5201374 5202295 -137069149 + L1MB7 LINE L1 3341 4231 -1953 1636 99 0 5 chr9 5202295 5202516 -137068928 + AluSp SINE Alu 1 220 -93 246 146 0 0 chr9 5202516 5202564 -137068880 + AluSp SINE Alu 256 303 0 8144 181 67 34 chr9 5202564 5202724 -137068720 + L1MB7 LINE L1 4231 4384 -1800 2170 116 30 0 chr9 5202724 5203027 -137068417 + AluSp SINE Alu 1 312 -1 8144 181 67 34 chr9 5203027 5203804 -137067640 + L1MB7 LINE L1 4384 5318 -866 1791 168 3 25 chr9 5203804 5204119 -137067325 + AluJo SINE Alu 1 308 -4 8144 181 67 34 chr9 5204119 5204432 -137067012 + L1MB7 LINE L1 5318 5619 -565 4081 117 130 7 chr9 5204432 5205131 -137066313 - LTR1 LTR ERV1 0 785 1 2506 165 28 7 chr9 5205174 5205610 -137065834 + L1MB7 LINE L1 5616 6060 -124 2356 108 0 6 chr9 5205693 5206007 -137065437 - AluSx SINE Alu 0 312 1 1720 173 0 0 chr9 5206314 5206592 -137064852 + AluJb SINE Alu 2 279 -33 615 27 0 0 chr9 5206594 5206667 -137064777 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 1015 157 30 35 chr9 5207490 5207688 -137063756 + MLT1C LTR MaLR 1 197 -270 721 220 58 73 chr9 5207718 5207977 -137063467 - MER93b LTR ERV1 -5 368 114 642 220 61 0 chr9 5207974 5208106 -137063338 - MER93b LTR ERV1 -216 157 18 * 1008 233 124 8 chr9 5208124 5208373 -137063071 + MLT1C LTR MaLR 190 467 0 1492 128 163 8 chr9 5208867 5209125 -137062319 + AluSg1 SINE Alu 1 298 -11 9156 52 50 0 chr9 5209481 5211296 -137060148 + L1PA5 LINE L1 4289 6141 -13 470 296 145 0 chr9 5217803 5217989 -137053455 - MIR SINE MIR -3 259 47 283 299 226 0 chr9 5218096 5218313 -137053131 + L2 LINE L2 2003 2268 -1046 26 82 0 0 chr9 5219111 5219172 -137052272 + AT_rich Low_complexity Low_complexity 1 61 0 822 259 160 32 chr9 5219211 5219265 -137052179 + L1MC4a LINE L1 5491 5537 -2271 1849 174 126 51 chr9 5219265 5219525 -137051919 - MLT1D LTR MaLR 0 505 266 2390 110 0 0 chr9 5219525 5219834 -137051610 - AluSx SINE Alu -3 309 1 1849 174 126 51 chr9 5219834 5220043 -137051401 - MLT1D LTR MaLR -239 266 1 822 259 160 32 chr9 5220043 5220389 -137051055 + L1MC4a LINE L1 5537 5942 -1866 2252 111 3 0 chr9 5221580 5221886 -137049558 + AluSx SINE Alu 1 307 -5 329 274 10 20 chr9 5221903 5222005 -137049439 - L1MCa LINE L1 -4358 2068 1968 714 212 62 36 chr9 5222194 5222241 -137049203 - MER3 DNA MER1_type -11 198 154 2118 109 0 3 chr9 5222241 5222546 -137048898 - AluSq SINE Alu 0 304 1 714 212 62 36 chr9 5222546 5222690 -137048754 - MER3 DNA MER1_type -55 154 1 289 211 40 0 chr9 5222690 5222766 -137048678 + L1MC5 LINE L1 7330 7408 -553 834 182 8 0 chr9 5222797 5222969 -137048475 + AluJb SINE Alu 150 322 0 2290 88 0 7 chr9 5222970 5223254 -137048190 + AluSp SINE Alu 1 282 -31 418 257 41 104 chr9 5223279 5223479 -137047965 + L1MC5 LINE L1 7474 7685 -357 2230 116 0 3 chr9 5223479 5223782 -137047662 - AluSp SINE Alu -11 302 1 418 257 41 104 chr9 5223782 5224089 -137047355 + L1MC5 LINE L1 7685 8015 -27 1605 183 14 10 chr9 5224110 5224399 -137047045 + AluJo SINE Alu 1 290 -22 2430 83 0 0 chr9 5224597 5224899 -137046545 - AluY SINE Alu -9 302 1 760 200 8 0 chr9 5225443 5225563 -137045881 + FLAM_A SINE Alu 1 121 -12 752 321 74 32 chr9 5225755 5226226 -137045218 - L2 LINE L2 0 3313 2823 2280 88 0 29 chr9 5226232 5226539 -137044905 + AluSx SINE Alu 1 298 -14 362 250 11 11 chr9 5226593 5226685 -137044759 + MLT1L LTR MaLR 1 92 -523 587 293 26 60 chr9 5226709 5226975 -137044469 + MLT1L LTR MaLR 206 462 -153 353 147 0 15 chr9 5226975 5227043 -137044401 + (TTCCC)n Simple_repeat Simple_repeat 2 68 0 1562 139 120 8 chr9 5227043 5227309 -137044135 - AluSg1 SINE Alu -13 296 1 343 296 133 0 chr9 5227310 5227445 -137043999 + MLT1L LTR MaLR 450 602 -13 1196 290 159 15 chr9 5227456 5228067 -137043377 - L2 LINE L2 -580 2734 2036 254 231 0 0 chr9 5228068 5228120 -137043324 - MIR SINE MIR -7 255 204 430 301 143 40 chr9 5228385 5228459 -137042985 - L1MC4a LINE L1 -1757 6051 5986 342 0 0 0 chr9 5228459 5228497 -137042947 + (CA)n Simple_repeat Simple_repeat 2 39 0 430 301 143 40 chr9 5228497 5229017 -137042427 - L1MC4a LINE L1 -1822 5986 5396 317 329 129 7 chr9 5229032 5229172 -137042272 + MIR SINE MIR 17 173 -89 335 306 43 3 chr9 5231486 5231586 -137039858 - MIR SINE MIR -102 106 2 1592 85 42 5 chr9 5231593 5231805 -137039639 + AluSp SINE Alu 75 294 -19 2100 115 0 50 chr9 5232312 5232486 -137038958 - AluSx SINE Alu -5 307 155 2296 85 7 3 chr9 5232486 5232781 -137038663 - AluY SINE Alu -15 296 1 2100 115 0 50 chr9 5232781 5232929 -137038515 - AluSx SINE Alu -157 155 1 202 146 62 0 chr9 5233106 5233154 -137038290 + (TTATA)n Simple_repeat Simple_repeat 3 53 0 229 139 66 7 chr9 5233156 5233307 -137038137 + (TA)n Simple_repeat Simple_repeat 2 161 0 222 361 0 0 chr9 5233691 5233763 -137037681 - L2 LINE L2 -445 2869 2798 2129 124 0 0 chr9 5234160 5234443 -137037001 + AluSc SINE Alu 1 283 -26 217 328 0 0 chr9 5234745 5234803 -137036641 - L2 LINE L2 -8 3264 3207 279 269 0 26 chr9 5235677 5235755 -137035689 - MIR3 SINE MIR -36 172 97 1663 183 10 28 chr9 5236037 5236327 -137035117 + AluJb SINE Alu 1 285 -27 1638 127 58 7 chr9 5236925 5237233 -137034211 + MER33 DNA MER1_type 1 324 0 2197 138 0 0 chr9 5237553 5237858 -137033586 + AluJo SINE Alu 1 305 -7 2256 89 0 7 chr9 5238163 5238454 -137032990 - AluSg SINE Alu -21 289 1 22 0 0 0 chr9 5238497 5238519 -137032925 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 5238912 5238948 -137032496 + AT_rich Low_complexity Low_complexity 1 36 0 295 332 101 10 chr9 5239274 5239473 -137031971 - L2 LINE L2 -221 3051 2835 22 35 0 0 chr9 5239639 5239668 -137031776 + AT_rich Low_complexity Low_complexity 1 29 0 605 269 48 32 chr9 5239845 5240094 -137031350 - ERVL LTR ERVL -849 4915 4663 1011 303 63 30 chr9 5240250 5240775 -137030669 - ERVL LTR ERVL -1126 4638 4097 365 316 23 11 chr9 5240928 5241105 -137030339 - ERVL LTR ERVL -2805 2959 2781 2166 78 30 0 chr9 5241330 5241626 -137029818 - L1PA12 LINE L1 -4 6164 5860 30 0 0 0 chr9 5242003 5242033 -137029411 + AT_rich Low_complexity Low_complexity 1 30 0 2370 76 0 0 chr9 5242429 5242718 -137028726 - AluSq SINE Alu -16 297 9 377 208 176 0 chr9 5242764 5242889 -137028555 + L1ME4a LINE L1 5974 6120 -1 1693 197 3 3 chr9 5243317 5243617 -137027827 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr9 5243617 5243639 -137027805 + AT_rich Low_complexity Low_complexity 1 22 0 875 236 100 9 chr9 5243917 5244146 -137027298 - MIR SINE MIR -12 250 1 1617 209 3 0 chr9 5244245 5244532 -137026912 - AluJo SINE Alu -20 292 5 2249 117 3 0 chr9 5244747 5245045 -137026399 + AluSg SINE Alu 1 299 -11 748 189 69 19 chr9 5245351 5245510 -137025934 - AluJo SINE Alu -24 288 122 1481 194 3 26 chr9 5245649 5245953 -137025491 - AluJo SINE Alu -15 297 1 2096 99 18 7 chr9 5245960 5246242 -137025202 - AluSx SINE Alu -27 285 1 710 179 0 30 chr9 5246519 5246653 -137024791 + FLAM_C SINE Alu 2 131 -2 22 0 0 0 chr9 5247862 5247884 -137023560 + AT_rich Low_complexity Low_complexity 1 22 0 351 293 75 45 chr9 5248298 5248431 -137023013 - L2 LINE L2 0 3272 3136 300 228 97 28 chr9 5248432 5248577 -137022867 + L1ME4a LINE L1 5713 5867 -254 450 261 85 13 chr9 5248684 5248837 -137022607 + L1ME4a LINE L1 5494 5657 -505 625 210 29 0 chr9 5248840 5248978 -137022466 + Charlie1 DNA MER1_type 5 146 -2615 * 1208 141 71 24 chr9 5248976 5249273 -137022171 + Charlie1 DNA MER1_type 2420 2730 -31 1035 154 135 5 chr9 5249379 5249587 -137021857 + MER46A DNA MER2_type 2 236 0 274 257 0 0 chr9 5250029 5250103 -137021341 + L1ME4a LINE L1 5978 6051 -70 33 25 0 0 chr9 5250126 5250166 -137021278 + AT_rich Low_complexity Low_complexity 1 40 0 1916 159 28 0 chr9 5250315 5250604 -137020840 - AluJo SINE Alu -15 297 1 636 244 73 6 chr9 5250822 5250986 -137020458 - MIR SINE MIR -3 259 85 2497 48 0 25 chr9 5252756 5253070 -137018374 + AluY SINE Alu 1 306 -5 359 269 107 13 chr9 5254312 5254461 -137016983 - MIR SINE MIR -44 218 56 23 0 0 0 chr9 5255334 5255357 -137016087 + AT_rich Low_complexity Low_complexity 1 23 0 197 200 67 50 chr9 5256002 5256062 -137015382 - MIR SINE MIR -200 62 2 28 29 0 0 chr9 5258517 5258552 -137012892 + AT_rich Low_complexity Low_complexity 1 35 0 2053 80 0 4 chr9 5258802 5259065 -137012379 + AluSc SINE Alu 1 262 -47 243 0 0 0 chr9 5259968 5259995 -137011449 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 2484 26 0 40 chr9 5260372 5260675 -137010769 - AluY SINE Alu -20 291 1 1657 178 39 0 chr9 5260797 5261083 -137010361 + AluJo SINE Alu 5 301 -11 264 314 0 0 chr9 5263496 5263566 -137007878 - MIR SINE MIR -13 249 180 441 296 0 0 chr9 5264045 5264352 -137007092 + (CA)n Simple_repeat Simple_repeat 1 307 0 2249 111 7 0 chr9 5265093 5265400 -137006044 + AluSx SINE Alu 1 309 -3 1760 174 7 20 chr9 5265548 5265853 -137005591 - AluJb SINE Alu -11 301 1 720 229 171 26 chr9 5265955 5266354 -137005090 + MLT1K LTR MaLR 23 551 -37 181 231 96 0 chr9 5266444 5266496 -137004948 + L2 LINE L2 3171 3227 -45 506 296 46 15 chr9 5266508 5266704 -137004740 - MIR SINE MIR 0 262 61 1619 177 23 23 chr9 5266805 5267104 -137004340 + AluJo SINE Alu 1 299 -13 597 233 219 5 chr9 5267166 5267381 -137004063 - MIR SINE MIR 0 262 2 1697 173 127 0 chr9 5267717 5268040 -137003404 + MER47A DNA MER2_type 3 366 0 296 243 19 39 chr9 5268386 5268489 -137002955 + MLT1K LTR MaLR 461 561 -27 237 229 43 29 chr9 5269025 5269095 -137002349 + L2 LINE L2 3200 3270 -2 201 179 26 0 chr9 5269470 5269509 -137001935 + GA-rich Low_complexity Low_complexity 2 41 0 676 220 59 14 chr9 5269628 5269891 -137001553 + MLT2B1 LTR ERVL 1 274 -140 1977 115 20 7 chr9 5269940 5270235 -137001209 + AluSx SINE Alu 1 299 -13 1938 137 3 20 chr9 5270558 5270858 -137000586 + AluJo SINE Alu 1 295 -17 2032 143 0 7 chr9 5271278 5271578 -136999866 + AluSx SINE Alu 2 299 -13 2257 108 3 0 chr9 5271619 5271915 -136999529 - AluSx SINE Alu -15 297 1 261 231 87 29 chr9 5271925 5272029 -136999415 + L2 LINE L2 3113 3222 -91 219 294 71 24 chr9 5272451 5272536 -136998908 - MIR3 SINE MIR -30 178 90 1993 117 3 47 chr9 5272931 5273248 -136998196 + AluSx SINE Alu 1 303 -9 343 229 42 35 chr9 5273276 5273420 -136998024 + L1ME4a LINE L1 5921 6065 -56 360 313 60 76 chr9 5273761 5274128 -136997316 - L1ME4a LINE L1 -206 5915 5555 406 232 89 0 chr9 5274603 5274715 -136996729 + L1MB8 LINE L1 4080 4201 -1945 1567 156 0 0 chr9 5274729 5274954 -136996490 + AluJb SINE Alu 77 301 -11 1309 229 23 30 chr9 5274956 5275178 -136996266 + L1MB8 LINE L1 4808 5027 -1119 2262 92 17 7 chr9 5275178 5275473 -136995971 - AluSg SINE Alu -12 298 1 1309 229 23 30 chr9 5275473 5275643 -136995801 + L1MB8 LINE L1 5027 5197 -949 966 65 16 8 chr9 5275643 5275767 -136995677 + AluSq/x SINE Alu 1 125 -188 976 166 79 6 chr9 5275780 5276065 -136995379 + L1MB8 LINE L1 5188 5484 -694 14947 113 22 5 chr9 5276069 5278421 -136993023 - Tigger1 DNA MER2_type 0 2418 26 623 196 16 0 chr9 5278432 5278446 -136992998 + L1MB8 LINE L1 5478 5490 -694 2124 122 3 3 chr9 5278446 5278749 -136992695 + AluSx SINE Alu 1 303 -9 623 196 16 0 chr9 5278749 5278871 -136992573 + L1MB8 LINE L1 5490 5616 -568 726 171 0 0 chr9 5278872 5278989 -136992455 + FLAM_C SINE Alu 2 118 -15 344 300 0 0 chr9 5279002 5279092 -136992352 - L1MC4 LINE L1 -1339 6703 6614 405 177 0 0 chr9 5279094 5279173 -136992271 + (TA)n Simple_repeat Simple_repeat 1 79 0 2170 119 3 0 chr9 5279173 5279467 -136991977 - AluSq SINE Alu -18 295 1 841 178 34 0 chr9 5279482 5279628 -136991816 + FRAM SINE Alu 1 145 -31 3114 149 16 17 chr9 5279648 5279710 -136991734 + L1MB7 LINE L1 5609 5670 -514 1552 183 27 23 chr9 5279710 5280011 -136991433 + AluJo SINE Alu 1 302 -10 3114 149 16 17 chr9 5280011 5280525 -136990919 + L1MB7 LINE L1 5670 6184 0 21 36 0 0 chr9 5280597 5280625 -136990819 + AT_rich Low_complexity Low_complexity 1 28 0 1009 158 0 0 chr9 5280633 5280785 -136990659 + AluJb SINE Alu 156 307 -5 2607 100 10 5 chr9 5281275 5281666 -136989778 - L1PA13 LINE L1 -5 6158 5766 2042 172 98 5 chr9 5281929 5282097 -136989347 + Tigger2a DNA MER2_type 2 153 -2555 1805 174 10 10 chr9 5282097 5282407 -136989037 - AluJo SINE Alu -2 310 1 2042 172 98 5 chr9 5282407 5282634 -136988810 + Tigger2a DNA MER2_type 153 434 0 1588 146 8 16 chr9 5283053 5283300 -136988144 - AluJo SINE Alu -62 250 6 200 314 97 8 chr9 5283708 5283832 -136987612 + L2 LINE L2 1699 1833 -1481 1567 199 47 24 chr9 5284163 5284544 -136986900 + MLT1B LTR MaLR 1 390 0 198 208 0 0 chr9 5284667 5284715 -136986729 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 1627 166 11 30 chr9 5284896 5285257 -136986187 + L1MB8 LINE L1 5716 6069 -109 25 31 0 0 chr9 5285252 5285284 -136986160 + AT_rich Low_complexity Low_complexity 1 32 0 * 633 168 0 18 chr9 5285284 5285397 -136986047 + AluJb SINE Alu 1 111 -201 495 123 0 0 chr9 5285397 5285556 -136985888 + (TA)n Simple_repeat Simple_repeat 1 159 0 324 250 3 31 chr9 5285549 5285676 -136985768 - L1MC4 LINE L1 -1337 6705 6614 * 1883 136 45 14 chr9 5285677 5285963 -136985481 - AluSx SINE Alu -17 295 1 45 34 0 0 chr9 5285963 5286022 -136985422 + AT_rich Low_complexity Low_complexity 1 59 0 2339 106 0 0 chr9 5286028 5286330 -136985114 + AluSx SINE Alu 1 302 -10 706 138 0 0 chr9 5286332 5286448 -136984996 + L1MB8 LINE L1 6063 6178 0 235 293 10 61 chr9 5286757 5286856 -136984588 - MIR3 SINE MIR -7 201 108 1817 149 24 7 chr9 5286884 5287172 -136984272 - AluJo SINE Alu -19 293 1 200 260 102 79 chr9 5287571 5287668 -136983776 + MIR3 SINE MIR 44 146 -62 1628 131 26 22 chr9 5287668 5287936 -136983508 + AluSx SINE Alu 36 304 -8 200 260 102 79 chr9 5287936 5287965 -136983479 + MIR3 SINE MIR 146 173 -35 477 269 91 62 chr9 5288201 5288368 -136983076 + L1ME4a LINE L1 5625 5786 -335 2267 106 0 0 chr9 5288368 5288660 -136982784 - AluSq SINE Alu -21 292 1 477 269 91 62 chr9 5288660 5288956 -136982488 + L1ME4a LINE L1 5786 6101 -20 1932 148 3 19 chr9 5288956 5289267 -136982177 - AluSx SINE Alu -6 306 1 1669 159 32 11 chr9 5289391 5289674 -136981770 - AluSq SINE Alu -10 303 15 1653 88 0 0 chr9 5289844 5290060 -136981384 + AluY SINE Alu 1 216 -95 264 100 0 0 chr9 5290253 5290293 -136981151 + (A)n Simple_repeat Simple_repeat 1 40 0 226 188 47 16 chr9 5290407 5290471 -136980973 - L1MB7 LINE L1 0 6184 6119 215 61 30 0 chr9 5290690 5290723 -136980721 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 2205 91 39 0 chr9 5292804 5293089 -136978355 - AluSp SINE Alu -17 296 1 2043 134 3 17 chr9 5293092 5293390 -136978054 - AluSq SINE Alu -18 295 2 247 232 0 0 chr9 5294052 5294108 -136977336 + L2 LINE L2 3254 3309 -4 1908 134 31 0 chr9 5294131 5294422 -136977022 - AluSx SINE Alu -12 300 1 1916 209 88 2 chr9 5294505 5294935 -136976509 + MLT1C LTR MaLR 1 467 0 1902 135 3 64 chr9 5295117 5295428 -136976016 + AluJb SINE Alu 1 292 -20 2023 124 0 31 chr9 5295438 5295759 -136975685 + AluSx SINE Alu 1 312 0 1143 168 0 0 chr9 5295759 5295932 -136975512 + AluSg/x SINE Alu 130 302 -8 463 274 73 22 chr9 5295937 5296116 -136975328 - L2 LINE L2 -337 2977 2790 1295 242 50 29 chr9 5296116 5296622 -136974822 + MLT1G LTR MaLR 1 518 -49 411 226 110 108 chr9 5296689 5297429 -136974015 - L1MD3 LINE L1 -1 7994 7141 1503 128 83 55 chr9 5297429 5297718 -136973726 + AluJo SINE Alu 1 297 -15 411 226 110 108 chr9 5297718 5298327 -136973117 - L1MD3 LINE L1 -854 7141 6535 216 0 0 0 chr9 5298379 5298403 -136973041 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1599 152 3 69 chr9 5298406 5298696 -136972748 - AluJo SINE Alu -30 282 12 1642 252 105 16 chr9 5299189 5299753 -136971691 - L2 LINE L2 -773 2541 1928 2292 119 0 3 chr9 5299769 5300080 -136971364 + AluSg SINE Alu 1 310 0 198 204 0 0 chr9 5300876 5300920 -136970524 - L2 LINE L2 -773 2541 2498 710 251 182 19 chr9 5300920 5301227 -136970217 - MLT1A1 LTR MaLR -8 357 1 1122 180 80 51 chr9 5301414 5301783 -136969661 - MSTC LTR MaLR 0 428 15 338 241 13 13 chr9 5302137 5302216 -136969228 + MER63 DNA MER1_type 688 766 -296 395 221 0 0 chr9 5302237 5302305 -136969139 + MER63 DNA MER1_type 994 1061 0 977 229 25 55 chr9 5302307 5302634 -136968810 + L1MC4a LINE L1 5256 5572 -2236 1126 183 116 12 chr9 5302634 5302885 -136968559 - LTR23 LTR ERV1 0 437 161 1910 159 0 7 chr9 5302980 5303358 -136968086 + AluSx SINE Alu 1 376 0 2285 117 0 0 chr9 5303433 5303742 -136967702 - AluSx SINE Alu -3 309 1 480 148 23 0 chr9 5303742 5303830 -136967614 - LTR23 LTR ERV1 -347 90 1 250 250 0 16 chr9 5303830 5303894 -136967550 + L1MC4a LINE L1 5569 5631 -2177 490 302 113 8 chr9 5303898 5304146 -136967298 + L1MC4a LINE L1 5670 5943 -1865 1431 161 0 0 chr9 5304185 5304403 -136967041 + AluJb SINE Alu 1 218 -94 2208 104 23 7 chr9 5304451 5304758 -136966686 + AluSp SINE Alu 1 312 -1 410 206 20 0 chr9 5304859 5304961 -136966483 + CT-rich Low_complexity Low_complexity 1 104 0 2129 145 0 3 chr9 5304983 5305294 -136966150 - AluJo SINE Alu -2 310 1 1640 179 16 52 chr9 5305745 5306034 -136965410 - MER4D LTR ERV1 0 903 628 1898 174 26 0 chr9 5306034 5306338 -136965106 + AluJo SINE Alu 1 312 0 1640 179 16 52 chr9 5306338 5306411 -136965033 - MER4D LTR ERV1 -275 628 554 1781 147 35 7 chr9 5306431 5306717 -136964727 - MER49 LTR ERV1 -629 294 1 380 324 7 7 chr9 5306803 5306945 -136964499 + MIR SINE MIR 61 202 -60 1915 183 86 49 chr9 5306945 5307431 -136964013 - LTR54 LTR ERV1 0 510 7 228 333 68 8 chr9 5307702 5307819 -136963625 + MIR SINE MIR 48 146 -62 1322 189 58 0 chr9 5308330 5308616 -136962828 - AluJo SINE Alu 0 310 10 1118 239 79 31 chr9 5308617 5309035 -136962409 + LTR56 LTR ERV1 8 445 0 236 29 0 29 chr9 5309072 5309106 -136962338 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 2429 66 0 3 chr9 5309128 5309417 -136962027 + AluY SINE Alu 1 288 -23 25 0 0 0 chr9 5309671 5309696 -136961748 + AT_rich Low_complexity Low_complexity 1 25 0 478 240 145 12 chr9 5309889 5310131 -136961313 + L1M4 LINE L1 5124 5397 -749 * 2859 200 136 10 chr9 5310128 5310748 -136960696 + L1MA5 LINE L1 11 708 -6460 3717 202 39 6 chr9 5310778 5311677 -136959767 + L1MA5 LINE L1 2211 3139 -4029 1382 197 66 4 chr9 5311677 5311951 -136959493 + AluJo SINE Alu 1 291 -21 2717 161 49 60 chr9 5311958 5312089 -136959355 + L1MA5 LINE L1 4949 5080 -2087 6829 46 0 4 chr9 5312089 5313056 -136958388 - L1PA6 LINE L1 -6 6148 5143 2717 161 49 60 chr9 5313056 5313700 -136957744 + L1MA5 LINE L1 5080 5770 -1397 618 195 0 18 chr9 5313703 5313816 -136957628 + AluJo SINE Alu 24 134 -178 1890 143 40 13 chr9 5313822 5314936 -136956508 + L1MA5 LINE L1 5931 7141 -180 1318 119 40 44 chr9 5314936 5315162 -136956282 - AluJo SINE Alu -3 309 85 994 94 61 39 chr9 5315162 5315342 -136956102 + L1MA5 LINE L1 7136 7319 -2 1929 245 129 21 chr9 5315345 5316058 -136955386 + L1ME3A LINE L1 5377 6166 -4 2192 122 0 34 chr9 5316115 5316435 -136955009 + AluSx SINE Alu 1 309 -3 2267 99 3 3 chr9 5316635 5316937 -136954507 + AluSc SINE Alu 1 302 -7 439 260 95 22 chr9 5316942 5317203 -136954241 + L1MC4a LINE L1 5613 5819 -302 1978 140 0 10 chr9 5317643 5317943 -136953501 + AluJb SINE Alu 10 306 -6 5640 231 72 36 chr9 5317943 5318425 -136953019 + L1MD1 LINE L1 2376 2839 -3307 2320 103 3 0 chr9 5318425 5318725 -136952719 + AluSp SINE Alu 2 302 -11 5640 231 72 36 chr9 5318725 5319603 -136951841 + L1MD1 LINE L1 2839 3684 -2462 426 39 0 0 chr9 5319603 5319655 -136951789 + (TG)n Simple_repeat Simple_repeat 2 53 0 5640 231 72 36 chr9 5319655 5320165 -136951279 + L1MD1 LINE L1 3684 4329 -1817 471 48 0 0 chr9 5320165 5320227 -136951217 + (CA)n Simple_repeat Simple_repeat 2 63 0 5640 231 72 36 chr9 5320227 5320396 -136951048 + L1MD1 LINE L1 4329 4490 -1656 728 181 52 26 chr9 5320847 5321002 -136950442 - FRAM SINE Alu -9 167 9 298 120 0 40 chr9 5321046 5321096 -136950348 - AluJb SINE Alu -170 132 85 1467 173 3 90 chr9 5323103 5323435 -136948009 + AluJo SINE Alu 1 305 0 2626 187 129 44 chr9 5323733 5324026 -136947418 + L1MD1 LINE L1 4477 4744 -1498 1934 116 13 51 chr9 5324026 5324337 -136947107 + AluSx SINE Alu 1 299 -13 2626 187 129 44 chr9 5324337 5324771 -136946673 + L1MD1 LINE L1 4744 5140 -1102 1578 202 0 26 chr9 5324771 5325078 -136946366 + AluJo SINE Alu 1 299 -13 2626 187 129 44 chr9 5325078 5325298 -136946146 + L1MD1 LINE L1 5140 5340 -902 2233 110 3 3 chr9 5325298 5325598 -136945846 + AluSx SINE Alu 1 300 -12 2626 187 129 44 chr9 5325598 5325736 -136945708 + L1MD1 LINE L1 5340 5465 -777 2219 117 10 0 chr9 5325736 5326045 -136945399 + AluSx SINE Alu 1 312 0 2626 187 129 44 chr9 5326045 5326247 -136945197 + L1MD1 LINE L1 5465 5892 -350 38 0 0 0 chr9 5326528 5326566 -136944878 + AT_rich Low_complexity Low_complexity 1 38 0 2116 141 11 22 chr9 5326573 5326942 -136944502 + L1MD1 LINE L1 5878 6242 0 665 233 0 0 chr9 5326977 5327110 -136944334 + FLAM_C SINE Alu 1 133 0 484 179 14 28 chr9 5327110 5327255 -136944189 + GA-rich Low_complexity Low_complexity 3 145 0 189 0 0 0 chr9 5327255 5327276 -136944168 + (GAAAA)n Simple_repeat Simple_repeat 1 21 0 183 80 0 0 chr9 5327353 5327378 -136944066 + (A)n Simple_repeat Simple_repeat 1 25 0 196 250 269 19 chr9 5327791 5327899 -136943545 - MIR3 SINE MIR -60 148 14 1209 174 38 5 chr9 5328585 5328797 -136942647 - MER20 DNA MER1_type 0 219 1 309 283 83 17 chr9 5328838 5328958 -136942486 + L3 LINE CR1 1218 1345 -232 745 206 63 71 chr9 5328959 5329212 -136942232 - MIR SINE MIR 0 262 12 3363 136 28 16 chr9 5329299 5329551 -136941893 + L1PB4 LINE L1 5579 5826 -330 1588 197 28 14 chr9 5329551 5329840 -136941604 + AluJo SINE Alu 1 293 -19 3363 136 28 16 chr9 5329840 5330155 -136941289 + L1PB4 LINE L1 5826 6153 -3 180 305 67 9 chr9 5330364 5330469 -136940975 + L2 LINE L2 3200 3310 -3 217 274 14 14 chr9 5330552 5330625 -136940819 + L3 LINE CR1 1495 1567 -10 234 195 37 98 chr9 5330770 5330852 -136940592 - L1MC4 LINE L1 -1339 6703 6627 2136 102 3 20 chr9 5330868 5331172 -136940272 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr9 5332983 5333011 -136938433 + GC_rich Low_complexity Low_complexity 1 28 0 1271 203 68 0 chr9 5334432 5334669 -136936775 - AluJb SINE Alu -59 253 1 2209 150 0 0 chr9 5334669 5335030 -136936414 - L1 LINE L1 -1142 5004 4644 16205 129 29 77 chr9 5335035 5336398 -136935046 - L1MA2 LINE L1 0 7723 6297 1304 141 0 0 chr9 5336398 5336583 -136934861 - AluSg/x SINE Alu -3 307 123 16205 129 29 77 chr9 5336583 5337191 -136934253 - L1MA2 LINE L1 -1426 6297 5662 1599 144 48 41 chr9 5337191 5337482 -136933962 - AluJb SINE Alu -9 303 11 16205 129 29 77 chr9 5337482 5337638 -136933806 - L1MA2 LINE L1 -2061 5662 5500 1696 158 92 0 chr9 5337638 5337910 -136933534 + AluSx SINE Alu 1 297 -15 16205 129 29 77 chr9 5337910 5339512 -136931932 - L1MA2 LINE L1 -2223 5500 3824 2777 90 0 37 chr9 5339512 5339584 -136931860 - THE1B LTR MaLR 0 364 291 2218 119 0 0 chr9 5339584 5339887 -136931557 + AluSg SINE Alu 1 303 -7 2777 90 0 37 chr9 5339887 5340192 -136931252 - THE1B LTR MaLR -73 291 1 16205 129 29 77 chr9 5340192 5340574 -136930870 - L1MA2 LINE L1 -3899 3824 3426 2947 73 0 5 chr9 5340574 5340942 -136930502 - L1PA8 LINE L1 0 6172 5807 16205 129 29 77 chr9 5340942 5342238 -136929206 - L1MA2 LINE L1 -4297 3426 2070 2262 114 0 3 chr9 5342238 5342545 -136928899 + AluSx SINE Alu 1 306 -6 16205 129 29 77 chr9 5342545 5342923 -136928521 - L1MA2 LINE L1 -5653 2070 1676 2290 105 14 0 chr9 5342923 5343218 -136928226 + AluSx SINE Alu 1 299 -13 16205 129 29 77 chr9 5343218 5344070 -136927374 - L1MA2 LINE L1 -6047 1676 1081 282 179 0 0 chr9 5344837 5344893 -136926551 + GA-rich Low_complexity Low_complexity 2 57 0 5690 178 47 6 chr9 5344909 5345939 -136925505 - L1MA2 LINE L1 -6489 1076 5 1823 131 3 91 chr9 5345956 5346285 -136925159 + AluSx SINE Alu 1 300 -12 2562 184 89 7 chr9 5346285 5346860 -136924584 + L1MB7 LINE L1 5487 6108 -76 1899 162 0 20 chr9 5346972 5347275 -136924169 - AluSq SINE Alu -16 297 1 1349 138 0 46 chr9 5347629 5347846 -136923598 - AluJb SINE Alu -105 207 1 320 146 0 0 chr9 5347852 5347907 -136923537 - MLT2B2 LTR ERVL -460 55 1 325 347 0 0 chr9 5347911 5348009 -136923435 - L1MC/D LINE L1 -2246 5562 5465 2117 131 0 13 chr9 5348115 5348428 -136923016 - AluSx SINE Alu -3 309 1 1237 124 27 5 chr9 5348523 5348708 -136922736 + AluSq SINE Alu 1 189 -124 262 185 0 37 chr9 5348711 5348819 -136922625 + GA-rich Low_complexity Low_complexity 2 105 0 1575 174 71 14 chr9 5349047 5349329 -136922115 - AluJo SINE Alu -4 298 1 1756 201 9 25 chr9 5349501 5349803 -136921641 - MLT2B1 LTR ERVL -111 409 61 1788 158 0 27 chr9 5349803 5350095 -136921349 - AluJb SINE Alu -28 284 1 1756 201 9 25 chr9 5350095 5350156 -136921288 - MLT2B1 LTR ERVL -459 61 1 528 296 0 0 chr9 5350167 5350302 -136921142 - L1MC/D LINE L1 -2253 5555 5421 1947 23 0 0 chr9 5350878 5351097 -136920347 - L1PA4 LINE L1 -160 5995 5777 1318 28 0 0 chr9 5351097 5351242 -136920202 + L1PA4 LINE L1 6003 6147 -8 2243 105 6 6 chr9 5351289 5351602 -136919842 - AluSq SINE Alu 0 313 1 41 36 0 0 chr9 5351608 5351663 -136919781 + AT_rich Low_complexity Low_complexity 1 55 0 1255 208 112 16 chr9 5351687 5351987 -136919457 + MLT1I LTR MaLR 92 407 -2 400 315 189 21 chr9 5352177 5352552 -136918892 - L3 LINE CR1 -1 1576 1139 2318 80 3 7 chr9 5352615 5352914 -136918530 + AluY SINE Alu 1 298 -13 247 173 49 25 chr9 5353434 5353515 -136917929 - L1ME4a LINE L1 -1 6120 6038 971 225 0 0 chr9 5353616 5353785 -136917659 + FAM SINE Alu 1 169 -6 230 200 67 53 chr9 5354018 5354093 -136917351 + L2 LINE L2 2316 2391 -923 1771 172 10 10 chr9 5354193 5354495 -136916949 + AluJo SINE Alu 1 302 -10 946 146 0 38 chr9 5354520 5354678 -136916766 - AluSg/x SINE Alu -20 292 141 2195 75 0 52 chr9 5354681 5354987 -136916457 - AluY SINE Alu -21 290 1 546 221 30 70 chr9 5355246 5355445 -136915999 - L2 LINE L2 -3 3310 3120 705 344 6 34 chr9 5355490 5355816 -136915628 - L2 LINE L2 -622 2692 2376 1660 98 0 0 chr9 5355841 5356046 -136915398 + AluSx SINE Alu 5 209 -103 720 112 0 0 chr9 5356085 5356183 -136915261 + AluSx SINE Alu 209 306 -6 312 109 43 0 chr9 5357653 5357699 -136913745 - MLT2D LTR ERVL 0 414 367 242 213 40 13 chr9 5357699 5357774 -136913670 + (TATG)n Simple_repeat Simple_repeat 1 77 0 1647 228 24 73 chr9 5357774 5358278 -136913166 - MLT2B1 LTR ERVL -41 479 1 429 278 23 8 chr9 5358439 5358572 -136912872 - L2 LINE L2 -955 2359 2225 759 192 8 0 chr9 5358599 5358719 -136912725 + AluJb SINE Alu 2 122 -190 28 0 0 0 chr9 5358790 5358818 -136912626 + AT_rich Low_complexity Low_complexity 1 28 0 266 335 73 35 chr9 5358818 5359078 -136912366 - L2 LINE L2 -1131 2183 1914 207 0 0 0 chr9 5359081 5359104 -136912340 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 392 208 0 0 chr9 5359358 5359430 -136912014 - MER94 DNA DNA -61 73 2 2224 237 94 5 chr9 5359710 5360318 -136911126 - L1MC4 LINE L1 -140 7902 7241 1180 183 76 55 chr9 5360332 5360622 -136910822 - L1MC4 LINE L1 -970 7072 6777 2347 91 0 3 chr9 5360625 5360923 -136910521 + AluSx SINE Alu 1 297 -15 2439 82 3 0 chr9 5360949 5361254 -136910190 + AluSc SINE Alu 1 306 -3 246 205 0 0 chr9 5361276 5361315 -136910129 + AluJ/monomer SINE Alu 1 39 -262 22 35 0 0 chr9 5362489 5362518 -136908926 + AT_rich Low_complexity Low_complexity 1 29 0 442 182 65 71 chr9 5362521 5362675 -136908769 - L1ME4a LINE L1 -4 6117 5965 1569 149 50 114 chr9 5362763 5362927 -136908517 + MLT1B LTR MaLR 1 174 -216 2154 130 0 0 chr9 5362927 5363228 -136908216 + AluSx SINE Alu 12 312 0 1569 149 50 114 chr9 5363228 5363465 -136907979 + MLT1B LTR MaLR 174 376 -14 1033 289 46 28 chr9 5363571 5364033 -136907411 - L1ME4a LINE L1 -188 5933 5468 2255 78 10 10 chr9 5364913 5365206 -136906238 + AluSq SINE Alu 1 293 -20 291 123 70 26 chr9 5365206 5365320 -136906124 + (TA)n Simple_repeat Simple_repeat 1 119 0 1937 103 31 78 chr9 5365483 5365675 -136905769 - AluSx SINE Alu -8 304 131 2179 60 43 0 chr9 5365675 5365984 -136905460 - AluY SINE Alu 0 311 1 1937 103 31 78 chr9 5365984 5366110 -136905334 - AluSx SINE Alu -181 131 1 409 274 51 0 chr9 5366305 5366422 -136905022 - MIR SINE MIR -27 235 113 1868 121 10 38 chr9 5367406 5367721 -136903723 - AluSx SINE Alu 0 307 1 711 286 122 61 chr9 5367741 5368120 -136903324 - L1ME4a LINE L1 -1792 4354 4000 2245 109 0 0 chr9 5368120 5368414 -136903030 + AluSx SINE Alu 1 294 -18 711 286 122 61 chr9 5368414 5368922 -136902522 - L1ME4a LINE L1 -2146 4000 3408 430 311 34 48 chr9 5369062 5369408 -136902036 + MLT1K LTR MaLR 225 586 -2 2214 100 3 3 chr9 5369775 5370074 -136901370 - AluSx SINE Alu -13 299 1 332 296 32 38 chr9 5370132 5370318 -136901126 - L1ME4a LINE L1 -3093 3053 2869 685 154 52 0 chr9 5370357 5370493 -136900951 - L1MC3 LINE L1 -1 7784 7642 1104 153 62 0 chr9 5370509 5370685 -136900759 - L1MC3 LINE L1 -427 7358 7172 1604 188 19 16 chr9 5370688 5370997 -136900447 - AluJo SINE Alu -2 310 1 354 231 9 37 chr9 5370997 5371105 -136900339 - MLT1F1 LTR MaLR -443 124 20 1389 194 70 39 chr9 5371105 5371461 -136899983 - L1MC3 LINE L1 -709 7076 6710 21 36 0 0 chr9 5371498 5371526 -136899918 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr9 5371545 5371577 -136899867 + AT_rich Low_complexity Low_complexity 1 32 0 44263 41 6 0 chr9 5371577 5377694 -136893750 - L1PA4 LINE L1 -3 6152 2 2103 117 7 7 chr9 5377696 5377994 -136893450 - AluSq SINE Alu -15 298 1 351 246 184 0 chr9 5378005 5378119 -136893325 - MLT1H LTR MaLR -65 484 350 2946 119 113 61 chr9 5378384 5378878 -136892566 - MLT2B1 LTR ERVL 0 520 1 255 313 10 20 chr9 5379662 5379761 -136891683 - MLT1-int LTR MaLR -1269 102 5 964 175 0 75 chr9 5381100 5381300 -136890144 + MER20 DNA MER1_type 1 185 -34 852 152 0 0 chr9 5381382 5381514 -136889930 + FRAM SINE Alu 33 164 -12 791 200 23 46 chr9 5381547 5381722 -136889722 - MER5B DNA MER1_type -1 177 7 297 178 208 20 chr9 5381728 5381829 -136889615 - MIR3 SINE MIR -48 160 41 26 82 0 0 chr9 5381931 5381992 -136889452 + AT_rich Low_complexity Low_complexity 1 61 0 3215 199 27 37 chr9 5382014 5382767 -136888677 + L1ME1 LINE L1 5408 6152 -14 231 295 147 0 chr9 5382774 5382903 -136888541 - HAL1b LINE L1 -6 1342 1195 1089 279 58 49 chr9 5382909 5383478 -136887966 - HAL1b LINE L1 -692 656 83 1358 188 19 16 chr9 5384360 5384616 -136886828 - MER58B DNA MER1_type -5 336 80 592 222 0 0 chr9 5384619 5384718 -136886726 + FLAM_A SINE Alu 1 99 -43 371 277 0 0 chr9 5384733 5384816 -136886628 - MER58B DNA MER1_type -258 83 1 1554 204 59 4 chr9 5385059 5385236 -136886208 - AluJo SINE Alu 0 308 108 189 0 0 0 chr9 5385236 5385257 -136886187 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1554 204 59 4 chr9 5385257 5385372 -136886072 - AluJo SINE Alu -200 108 1 271 258 152 3 chr9 5385544 5385636 -136885808 + MER2 DNA MER2_type 2 104 -135 1362 130 0 5 chr9 5385716 5385908 -136885536 + AluSx SINE Alu 7 197 -115 567 216 203 0 chr9 5387294 5387442 -136884002 + MER5A DNA MER1_type 9 186 -3 701 232 19 19 chr9 5387459 5387516 -136883928 - MER5B DNA MER1_type -5 173 117 2282 116 0 3 chr9 5387516 5387818 -136883626 + AluSg SINE Alu 1 301 -9 701 232 19 19 chr9 5387818 5387915 -136883529 - MER5B DNA MER1_type -60 118 19 2501 77 0 0 chr9 5388096 5388394 -136883050 - AluY SINE Alu -13 298 1 3283 184 11 17 chr9 5388410 5389072 -136882372 - L1MB4 LINE L1 -6 6174 5517 1698 192 0 3 chr9 5390065 5390362 -136881082 - AluJb SINE Alu -16 296 1 1668 169 17 40 chr9 5390367 5390669 -136880775 - AluJo SINE Alu -17 295 1 605 137 56 96 chr9 5390879 5390995 -136880449 - MER53 DNA DNA 0 189 83 2193 117 0 3 chr9 5390995 5391294 -136880150 + AluY SINE Alu 2 299 -12 605 137 56 96 chr9 5391294 5391374 -136880070 - MER53 DNA DNA -106 83 1 295 253 214 17 chr9 5391816 5391994 -136879450 - LTR33 LTR ERVL -297 224 12 487 284 45 13 chr9 5392002 5392157 -136879287 - MIR SINE MIR -19 243 84 23 0 0 0 chr9 5392220 5392243 -136879201 + AT_rich Low_complexity Low_complexity 1 23 0 310 218 46 35 chr9 5392570 5392657 -136878787 - L3 LINE CR1 -7 1570 1483 43 35 0 0 chr9 5393297 5393354 -136878090 + AT_rich Low_complexity Low_complexity 1 57 0 487 211 37 9 chr9 5394036 5394145 -136877299 - MER81 DNA DNA 0 114 3 198 103 0 0 chr9 5394462 5394491 -136876953 + (CA)n Simple_repeat Simple_repeat 2 30 0 301 350 6 0 chr9 5394854 5395017 -136876427 + L1M4 LINE L1 2880 3043 -3103 303 28 0 0 chr9 5395072 5395108 -136876336 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 195 284 84 63 chr9 5395408 5395503 -136875941 - MIR SINE MIR -59 149 53 267 284 159 35 chr9 5395980 5396212 -136875232 - L3 LINE CR1 -19 1558 1298 697 223 0 0 chr9 5396813 5396934 -136874510 - FLAM_A SINE Alu -12 121 1 584 247 45 40 chr9 5396934 5397181 -136874263 + L1ME4a LINE L1 5588 5835 -286 300 215 50 91 chr9 5397760 5397881 -136873563 - MLT1H LTR MaLR 0 549 434 901 137 0 0 chr9 5398004 5398135 -136873309 + AluSg/x SINE Alu 178 308 -4 1923 140 0 47 chr9 5398598 5398919 -136872525 - AluSx SINE Alu -6 306 1 214 340 0 10 chr9 5401406 5401509 -136869935 + (CCA)n Simple_repeat Simple_repeat 1 102 0 2390 68 3 0 chr9 5401900 5402195 -136869249 - AluY SINE Alu 0 311 16 306 0 0 0 chr9 5402514 5402548 -136868896 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1898 153 0 33 chr9 5402643 5402950 -136868494 - AluSx SINE Alu -15 297 1 1631 192 17 7 chr9 5403185 5403487 -136867957 - AluJb SINE Alu -7 305 1 524 240 6 55 chr9 5403490 5403673 -136867771 - L1ME2 LINE L1 -36 6128 5955 503 246 94 36 chr9 5403687 5403891 -136867553 - L1ME2 LINE L1 -633 5537 5289 792 206 12 0 chr9 5403891 5404051 -136867393 - FRAM SINE Alu -1 165 4 503 246 94 36 chr9 5404051 5404160 -136867284 - L1ME2 LINE L1 -881 5289 5188 397 154 22 33 chr9 5404166 5404257 -136867187 - Charlie1a DNA MER1_type -633 822 733 41880 39 3 0 chr9 5404263 5410395 -136861049 - L1PA4 LINE L1 -6 6149 8 462 194 31 0 chr9 5410402 5410500 -136860944 - Charlie1a DNA MER1_type -710 745 645 768 226 7 0 chr9 5410512 5410658 -136860786 + AluJb SINE Alu 148 294 -18 1321 189 61 10 chr9 5410688 5411000 -136860444 - Charlie1a DNA MER1_type -803 652 325 5081 153 19 38 chr9 5411001 5411740 -136859704 + L1MC2 LINE L1 5308 6023 -321 2340 78 0 10 chr9 5411740 5412046 -136859398 - AluY SINE Alu -8 303 1 5081 153 19 38 chr9 5412046 5412351 -136859093 + L1MC2 LINE L1 6023 6332 -12 1056 181 7 90 chr9 5412351 5412639 -136858805 - Charlie1a DNA MER1_type -1110 345 82 560 252 41 41 chr9 5412661 5413017 -136858427 - L1ME LINE L1 -4831 1249 892 2316 91 10 0 chr9 5413040 5413336 -136858108 + AluSx SINE Alu 1 299 -13 2892 9 0 0 chr9 5413354 5413670 -136857774 + AluYb8 SINE Alu 1 316 -2 799 147 55 10 chr9 5413815 5414007 -136857437 - L1MA7 LINE L1 -6 6285 6093 366 243 33 38 chr9 5414005 5414215 -136857229 - L1ME LINE L1 -5179 891 683 * 4867 180 25 26 chr9 5414252 5415206 -136856238 + L1 LINE L1 818 1770 -5398 1798 158 22 0 chr9 5415199 5415559 -136855885 + L1 LINE L1 5284 5651 -1516 * 680 122 65 0 chr9 5415564 5415687 -136855757 - L1MA4 LINE L1 -17 6283 6153 1327 275 43 37 chr9 5415693 5416184 -136855260 - L1M3b LINE L1 -5777 504 11 871 210 125 23 chr9 5416202 5416670 -136854774 - L1M4c LINE L1 -4137 2509 1914 674 144 0 0 chr9 5416691 5416795 -136854649 + AluSg/x SINE Alu 170 273 -39 789 157 31 6 chr9 5416842 5417001 -136854443 - L1MC/D LINE L1 -756 5577 5415 8869 155 91 86 chr9 5417006 5417074 -136854370 - L1MCa LINE L1 -3948 2478 2412 1877 183 0 16 chr9 5417074 5417391 -136854053 - AluJo SINE Alu 0 312 1 8869 155 91 86 chr9 5417391 5417865 -136853579 - L1MCa LINE L1 -4014 2412 1942 226 185 0 74 chr9 5417865 5417919 -136853525 - Alu SINE Alu -249 50 1 8869 155 91 86 chr9 5417919 5419816 -136851628 - L1MCa LINE L1 -4484 1942 56 3488 217 66 22 chr9 5419837 5421265 -136850179 - L1M4c LINE L1 -4726 1920 448 628 264 58 14 chr9 5421404 5421681 -136849763 - L1ME4a LINE L1 -296 5825 5537 442 306 153 6 chr9 5421785 5421942 -136849502 - MER5A DNA MER1_type -1 188 9 1153 122 0 43 chr9 5423155 5423343 -136848101 - AluSg/x SINE Alu -1 311 132 511 343 23 23 chr9 5424126 5424298 -136847146 + MER5B DNA MER1_type 3 174 -4 701 152 23 38 chr9 5424310 5424442 -136847002 + MER5B DNA MER1_type 1 130 -48 279 262 0 0 chr9 5424479 5424540 -136846904 + MER5B DNA MER1_type 118 178 0 599 207 200 0 chr9 5424613 5424763 -136846681 - MER5A DNA MER1_type 0 189 10 1777 139 89 4 chr9 5424921 5425202 -136846242 - AluSx SINE Alu -7 305 1 345 47 0 0 chr9 5425453 5425496 -136845948 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 238 39 28 chr9 5425859 5426013 -136845431 - HAL1b LINE L1 -12 1336 1233 206 158 26 0 chr9 5426013 5426051 -136845393 + T-rich Low_complexity Low_complexity 2 40 0 2033 135 0 3 chr9 5426862 5427151 -136844293 + AluSx SINE Alu 6 293 -19 1453 250 69 40 chr9 5427371 5427919 -136843525 + L2 LINE L2 847 1410 -1904 686 286 57 74 chr9 5428135 5428307 -136843137 + LTR16B LTR ERVL 118 282 -182 3074 147 17 28 chr9 5428307 5428911 -136842533 - L1MB8 LINE L1 0 6178 5582 686 286 57 74 chr9 5428911 5429091 -136842353 + LTR16B LTR ERVL 282 464 0 2828 234 119 60 chr9 5429095 5430189 -136841255 + L2 LINE L2 1512 2669 -645 273 193 122 92 chr9 5430200 5430438 -136841006 + L1MC5 LINE L1 7639 7883 -78 377 268 151 34 chr9 5430446 5430466 -136840978 + HAL1b LINE L1 444 460 -888 3234 143 38 4 chr9 5430466 5430998 -136840446 + MER44D DNA MER2_type 1 605 0 377 268 151 34 chr9 5430998 5431044 -136840400 + HAL1b LINE L1 460 499 -849 2508 71 0 3 chr9 5431044 5431353 -136840091 + AluY SINE Alu 1 308 -3 377 268 151 34 chr9 5431353 5431576 -136839868 + HAL1b LINE L1 499 768 -580 2031 126 13 10 chr9 5431627 5431928 -136839516 - AluSx SINE Alu -9 303 2 324 288 65 52 chr9 5431962 5432115 -136839329 + MIR SINE MIR 18 172 -90 398 278 254 28 chr9 5432157 5432441 -136839003 - L2 LINE L2 -38 3275 2928 234 167 167 0 chr9 5432776 5432830 -136838614 - MIR SINE MIR -90 172 110 352 275 28 28 chr9 5433095 5433204 -136838240 - L2 LINE L2 0 3313 3205 1156 181 0 0 chr9 5433863 5434051 -136837393 - MER5A DNA MER1_type 0 189 2 555 312 73 12 chr9 5434308 5434555 -136836889 + MIR SINE MIR 1 262 0 397 327 31 6 chr9 5434550 5434709 -136836735 - MIR SINE MIR -26 236 74 * 225 356 27 0 chr9 5434939 5435012 -136836432 + L2 LINE L2 3195 3269 -3 351 295 89 85 chr9 5435067 5435677 -136835767 + L1ME4a LINE L1 5495 6121 0 2061 128 3 3 chr9 5437464 5437783 -136833661 - AluY SINE Alu 0 311 1 192 308 10 92 chr9 5438509 5438704 -136832740 - L3 LINE CR1 -708 869 691 433 260 122 25 chr9 5438736 5438932 -136832512 - MIR SINE MIR -42 220 6 216 320 48 29 chr9 5438933 5439036 -136832408 + MER5B DNA MER1_type 5 109 -69 253 307 122 42 chr9 5439075 5439264 -136832180 - L3 LINE CR1 -931 646 443 1429 245 49 56 chr9 5440378 5440892 -136830552 + L2 LINE L2 2804 3313 0 333 261 59 128 chr9 5441269 5441606 -136829838 + L1M2 LINE L1 662 975 -5874 319 289 99 99 chr9 5441506 5442234 -136829210 - L1M2 LINE L1 -5479 1370 776 * 1292 156 115 0 chr9 5443191 5443497 -136827947 - MER46B DNA MER2_type -8 228 1 248 289 256 39 chr9 5443915 5444000 -136827444 + MIR SINE MIR 9 74 -188 2358 103 0 0 chr9 5444000 5444310 -136827134 + AluSx SINE Alu 1 310 -2 248 289 256 39 chr9 5444310 5444404 -136827040 + MIR SINE MIR 74 227 -35 876 195 118 10 chr9 5444798 5445110 -136826334 + MER119 DNA MER1_type 137 583 0 300 320 80 8 chr9 5446751 5446876 -136824568 - MIR3 SINE MIR -9 199 66 185 328 40 34 chr9 5446893 5447070 -136824374 - L2 LINE L2 -889 2425 2248 538 297 36 5 chr9 5448288 5448480 -136822964 + L2 LINE L2 1471 1668 -1646 1451 207 134 88 chr9 5448491 5449036 -136822408 - MLT1G LTR MaLR -12 578 14 3242 138 71 3 chr9 5450295 5450861 -136820583 + MER6A DNA MER2_type 2 605 0 825 201 37 27 chr9 5450870 5451054 -136820390 - MER5A DNA MER1_type -3 175 1 911 239 4 39 chr9 5451062 5451292 -136820152 - MER58A DNA MER1_type 0 224 3 358 254 91 0 chr9 5451298 5451408 -136820036 + L2 LINE L2 1707 1826 -1488 289 303 175 20 chr9 5451459 5451710 -136819734 - L1MC/D LINE L1 -2105 5703 5414 1667 123 4 0 chr9 5452770 5453037 -136818407 + AluSq SINE Alu 58 325 0 25 31 0 0 chr9 5453059 5453091 -136818353 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr9 5453299 5453334 -136818110 + AT_rich Low_complexity Low_complexity 1 35 0 1771 154 13 16 chr9 5453468 5453779 -136817665 - AluJb SINE Alu -2 310 1 2459 140 29 7 chr9 5453781 5454196 -136817248 - MSTA LTR MaLR -4 424 1 2421 87 0 0 chr9 5454802 5455101 -136816343 - AluSg SINE Alu -11 299 1 217 161 54 0 chr9 5455266 5455322 -136816122 + A-rich Low_complexity Low_complexity 2 60 0 2234 49 32 14 chr9 5455385 5455669 -136815775 - AluY SINE Alu -20 291 3 1213 79 57 6 chr9 5456050 5456227 -136815217 - MLT2A1 LTR ERVL -8 436 251 436 131 0 0 chr9 5456232 5456293 -136815151 - AluS SINE Alu -255 63 3 273 272 44 44 chr9 5456468 5456604 -136814840 - L1M4 LINE L1 -660 6220 6085 780 192 5 101 chr9 5457340 5457559 -136813885 - MER74B LTR ERVL -367 255 58 2738 222 52 15 chr9 5457560 5458376 -136813068 - L1M4 LINE L1 -1805 5043 4198 12915 161 20 45 chr9 5458482 5461113 -136810331 - L1M4 LINE L1 -4285 2564 1 1588 164 10 31 chr9 5461412 5461705 -136809739 - AluJb SINE Alu -25 287 1 26 0 0 0 chr9 5462063 5462089 -136809355 + AT_rich Low_complexity Low_complexity 1 26 0 1934 114 41 6 chr9 5462781 5463124 -136808320 - L1MA4A LINE L1 -138 6165 5811 1870 212 65 11 chr9 5463131 5463580 -136807864 - L1M2 LINE L1 -6366 483 11 315 169 0 0 chr9 5463585 5463644 -136807800 - L1M4 LINE L1 -5615 927 869 2396 86 0 0 chr9 5463747 5464037 -136807407 + AluY SINE Alu 1 290 -21 891 279 75 83 chr9 5464152 5464984 -136806460 - L1M4 LINE L1 -5716 826 2 214 172 0 35 chr9 5465226 5465284 -136806160 + CT-rich Low_complexity Low_complexity 2 57 0 1769 156 52 0 chr9 5465302 5465591 -136805853 - AluSx SINE Alu -8 304 1 369 263 95 22 chr9 5465832 5466106 -136805338 - L1M4 LINE L1 -2984 3864 3571 226 222 0 0 chr9 5466470 5466515 -136804929 + (TG)n Simple_repeat Simple_repeat 2 46 0 468 267 119 9 chr9 5466585 5466795 -136804649 - Charlie2 DNA MER1_type 0 2862 2630 14814 131 21 12 chr9 5466975 5469371 -136802073 - Tigger1 DNA MER2_type -2 2416 1 437 266 101 60 chr9 5470236 5470435 -136801009 - MIR SINE MIR -42 220 14 26 0 0 0 chr9 5470619 5470645 -136800799 + AT_rich Low_complexity Low_complexity 1 26 0 340 312 72 38 chr9 5470653 5470890 -136800554 + L1 LINE L1 4268 4512 -1634 40219 49 11 1 chr9 5471544 5477638 -136793806 + L1PA4 LINE L1 1 6151 -4 1046 237 112 5 chr9 5477945 5478312 -136793132 + L1MB7 LINE L1 3365 3770 -2376 1170 179 8 49 chr9 5478312 5478558 -136792886 - MER46A DNA MER2_type 0 236 1 5796 223 31 14 chr9 5478563 5478991 -136792453 + L1MB7 LINE L1 3775 4194 -1952 1924 169 33 0 chr9 5478991 5479323 -136792121 - MER2 DNA MER2_type -1 343 1 5796 223 31 14 chr9 5479323 5480493 -136790951 + L1MB7 LINE L1 4194 5400 -746 2834 19 0 0 chr9 5481893 5482209 -136789235 - AluYb8 SINE Alu -2 316 1 332 252 89 158 chr9 5482446 5482871 -136788573 - L1M4 LINE L1 -5907 942 547 2513 169 22 3 chr9 5483118 5483748 -136787696 + L1MB7 LINE L1 5386 6175 -9 4184 168 59 33 chr9 5485169 5486475 -136784969 - L1MB3 LINE L1 -3 6180 4845 1192 171 9 57 chr9 5487445 5487673 -136783771 - AluJo SINE Alu -95 217 1 2260 111 0 3 chr9 5487906 5488213 -136783231 - AluSg SINE Alu -4 306 1 2106 163 3 9 chr9 5489450 5489799 -136781645 - MER7A DNA MER2_type 0 346 2 1547 164 95 0 chr9 5490081 5490343 -136781101 - AluJo SINE Alu -25 287 1 1221 175 69 0 chr9 5490708 5490925 -136780519 - MER46A DNA MER2_type -3 233 2 328 369 6 18 chr9 5491155 5491323 -136780121 + MER5A DNA MER1_type 2 167 -22 * 504 271 7 21 chr9 5491187 5491331 -136780113 - MER5A DNA MER1_type -22 167 26 277 208 0 0 chr9 5491753 5491801 -136779643 - L2 LINE L2 0 3313 3266 4268 186 37 13 chr9 5492245 5493296 -136778148 - L1MB7 LINE L1 -1 6183 5110 455 305 140 5 chr9 5493308 5493508 -136777936 - L2 LINE L2 -1391 1923 1697 302 320 47 62 chr9 5496353 5496481 -136774963 + L2 LINE L2 3146 3271 -1 337 304 49 10 chr9 5496623 5496725 -136774719 - MIR SINE MIR -139 123 18 4711 160 44 21 chr9 5497147 5497349 -136774095 - L1MB2 LINE L1 0 6171 5975 2181 109 7 3 chr9 5497349 5497653 -136773791 - AluSg SINE Alu -5 305 1 4711 160 44 21 chr9 5497653 5497980 -136773464 - L1MB2 LINE L1 -196 5975 5657 1810 137 64 20 chr9 5497980 5498337 -136773107 - THE1C LTR MaLR -2 373 1 4711 160 44 21 chr9 5498337 5498840 -136772604 - L1MB2 LINE L1 -514 5657 5121 2688 253 56 18 chr9 5498846 5499705 -136771739 - L1ME3 LINE L1 -8 6154 5263 14737 127 31 16 chr9 5499738 5501850 -136769594 - Tigger1 DNA MER2_type -1 2417 265 1403 205 0 0 chr9 5501850 5502089 -136769355 - MER8 DNA MER2_type 0 239 1 14737 127 31 16 chr9 5502089 5502358 -136769086 - Tigger1 DNA MER2_type -2153 265 1 474 278 124 36 chr9 5502386 5502692 -136768752 - L1MC/D LINE L1 -2179 5629 5297 479 262 78 85 chr9 5502871 5503344 -136768100 - HAL1 LINE L1 -327 2180 1711 2131 101 0 0 chr9 5503648 5503924 -136767520 + AluSg SINE Alu 1 276 -34 1969 141 14 0 chr9 5504028 5504325 -136767119 + AluSx SINE Alu 9 309 -3 1109 174 47 0 chr9 5505238 5505428 -136766016 + MER3 DNA MER1_type 2 200 -9 223 409 64 0 chr9 5505806 5505916 -136765528 - L2 LINE L2 0 3272 3156 30 0 0 0 chr9 5506741 5506771 -136764673 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr9 5507245 5507268 -136764176 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 5507422 5507447 -136763997 + AT_rich Low_complexity Low_complexity 1 25 0 2282 92 0 25 chr9 5507644 5507961 -136763483 + AluSc SINE Alu 1 309 0 21 57 0 0 chr9 5508124 5508159 -136763285 + AT_rich Low_complexity Low_complexity 1 35 0 383 349 54 46 chr9 5508224 5508541 -136762903 - L2 LINE L2 -219 3053 2735 240 211 18 0 chr9 5510118 5510175 -136761269 + L1MEd LINE L1 115 172 -5947 709 217 119 7 chr9 5510182 5510325 -136761119 + MER8 DNA MER2_type 1 159 -80 26 30 0 0 chr9 5510326 5510359 -136761085 + AT_rich Low_complexity Low_complexity 1 33 0 238 173 39 0 chr9 5510359 5510411 -136761033 - Alu SINE Alu -5 297 244 502 156 0 0 chr9 5510476 5510553 -136760891 - Tigger2 DNA MER2_type -2641 77 1 1912 282 74 33 chr9 5510614 5511497 -136759947 + L1MEd LINE L1 238 1156 -4963 420 305 0 0 chr9 5511545 5511650 -136759794 - MIR SINE MIR -146 116 12 756 275 78 29 chr9 5511685 5511929 -136759515 - MIR SINE MIR 0 262 7 13971 129 39 30 chr9 5514055 5516451 -136754993 + Tigger1 DNA MER2_type 1 2417 -1 24 53 0 0 chr9 5516694 5516732 -136754712 + AT_rich Low_complexity Low_complexity 1 38 0 32 43 0 0 chr9 5516971 5517017 -136754427 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 5517156 5517188 -136754256 + AT_rich Low_complexity Low_complexity 1 32 0 719 198 21 88 chr9 5519409 5519601 -136751843 + AluJb SINE Alu 114 292 -20 431 320 47 13 chr9 5519662 5519842 -136751602 + MIR3 SINE MIR 1 185 -23 2617 46 0 0 chr9 5520660 5520967 -136750477 - AluY SINE Alu -4 307 1 501 183 72 46 chr9 5521758 5521808 -136749636 + MER103 DNA DNA 10 57 -109 3435 194 58 53 chr9 5521808 5522772 -136748672 - LTR5 LTR ERVK 0 969 1 501 183 72 46 chr9 5522772 5522874 -136748570 + MER103 DNA DNA 57 166 0 320 171 260 14 chr9 5523672 5523818 -136747626 - L1ME4a LINE L1 -202 5919 5738 21 0 0 0 chr9 5524255 5524276 -136747168 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr9 5524305 5524335 -136747109 + AT_rich Low_complexity Low_complexity 1 30 0 311 53 0 0 chr9 5525839 5525877 -136745567 - THE1-int LTR MaLR -125 1455 1418 26 0 0 0 chr9 5525891 5525917 -136745527 + GC_rich Low_complexity Low_complexity 1 26 0 2147 101 70 20 chr9 5526890 5527247 -136744197 - THE1C LTR MaLR 0 375 1 431 273 101 62 chr9 5527346 5527627 -136743817 + L1ME LINE L1 5407 5708 -413 22 0 0 0 chr9 5527709 5527731 -136743713 + AT_rich Low_complexity Low_complexity 1 22 0 408 323 57 6 chr9 5527846 5528004 -136743440 - MIR SINE MIR -79 183 18 1531 214 24 40 chr9 5528361 5528739 -136742705 - MLT1A2 LTR MaLR -2 372 1 2432 84 0 0 chr9 5529030 5529338 -136742106 + AluY SINE Alu 2 309 -2 22 0 0 0 chr9 5529371 5529393 -136742051 + AT_rich Low_complexity Low_complexity 1 22 0 2303 70 0 10 chr9 5538470 5538768 -136732676 - AluY SINE Alu -16 295 1 22 35 0 0 chr9 5539251 5539280 -136732164 + AT_rich Low_complexity Low_complexity 1 29 0 34787 90 17 12 chr9 5540688 5546808 -136724636 + L1PA6 LINE L1 12 6146 -8 252 0 0 0 chr9 5552964 5552992 -136718452 + (T)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr9 5553197 5553222 -136718222 + (A)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr9 5554705 5554730 -136716714 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6795 66 9 6 chr9 5554730 5555847 -136715597 + L1PA7 LINE L1 5030 6154 0 702 275 140 5 chr9 5555852 5556059 -136715385 - MIR SINE MIR -10 252 18 21 36 0 0 chr9 5556122 5556150 -136715294 + AT_rich Low_complexity Low_complexity 1 28 0 222 310 0 0 chr9 5556410 5556468 -136714976 - L2 LINE L2 -12 3301 3244 712 153 19 149 chr9 5556762 5557030 -136714414 + MLT1A1 LTR MaLR 116 348 -17 238 280 75 11 chr9 5557086 5557179 -136714265 - L2 LINE L2 -548 2766 2668 408 198 123 0 chr9 5557200 5557306 -136714138 + Charlie1 DNA MER1_type 52 170 -2591 * 1268 171 58 3 chr9 5557303 5557595 -136713849 + Charlie1 DNA MER1_type 2454 2761 0 2637 192 98 143 chr9 5557668 5557868 -136713576 - Charlie2a DNA MER1_type 0 2862 2655 563 88 0 0 chr9 5557868 5557948 -136713496 + Alu SINE Alu 217 296 -15 2637 192 98 143 chr9 5557948 5559754 -136711690 - Charlie2a DNA MER1_type -207 2655 871 1148 184 37 110 chr9 5559754 5560128 -136711316 - MLT1A1 LTR MaLR 0 365 19 328 342 167 30 chr9 5560511 5560892 -136710552 - L2 LINE L2 -773 2541 2077 3515 138 60 18 chr9 5560892 5561573 -136709871 - MER67C LTR ERV1 0 710 1 328 342 167 30 chr9 5561573 5561682 -136709762 - L2 LINE L2 -1237 2077 1984 694 202 8 0 chr9 5562337 5562461 -136708983 - MER68 LTR ERV1 0 562 438 * 1176 166 85 0 chr9 5562458 5562681 -136708763 - MER68 LTR ERV1 -320 242 1 3903 154 32 11 chr9 5562936 5563662 -136707782 - L1PB4 LINE L1 -3 6153 5413 1914 193 21 5 chr9 5563673 5564247 -136707197 - L1PB4 LINE L1 -751 5395 4887 1769 146 3 6 chr9 5564245 5564574 -136706870 + L1PB4 LINE L1 4556 4883 -1263 * 529 265 108 79 chr9 5564881 5565642 -136705802 - L1ME4a LINE L1 -74 6047 5258 369 0 0 0 chr9 5567853 5567894 -136703550 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 86 0 0 chr9 5569646 5569704 -136701740 + AT_rich Low_complexity Low_complexity 1 58 0 2610 42 0 3 chr9 5570492 5570801 -136700643 - AluY SINE Alu -3 308 1 2413 79 0 7 chr9 5571208 5571512 -136699932 - AluSq SINE Alu -11 302 1 438 189 175 63 chr9 5572824 5573030 -136698414 + MER106A DNA MER1_type 7 235 -1 10756 124 20 18 chr9 5573206 5575130 -136696314 + L1PA7 LINE L1 1383 4098 -3486 18309 79 10 1 chr9 5575132 5578512 -136692932 + L1PA7 LINE L1 4161 7588 -4 21 0 0 0 chr9 5578676 5578697 -136692747 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5578815 5578837 -136692607 + AT_rich Low_complexity Low_complexity 1 22 0 287 194 126 39 chr9 5578970 5579073 -136692371 - L1M4 LINE L1 -699 5475 5364 318 308 42 30 chr9 5579401 5579581 -136691863 - MIR3 SINE MIR -23 185 1 282 330 93 22 chr9 5580239 5580421 -136691023 + L2 LINE L2 2590 2784 -530 19260 173 38 14 chr9 5580488 5583436 -136688008 - L1PA13 LINE L1 -2 6812 3936 2237 108 3 0 chr9 5583436 5583731 -136687713 - AluSx SINE Alu -16 296 1 19260 173 38 14 chr9 5583731 5586452 -136684992 - L1PA13 LINE L1 -2878 3936 890 1855 263 58 0 chr9 5586466 5586895 -136684549 - L1PA13 LINE L1 -5950 837 384 2671 120 5 2 chr9 5586922 5587330 -136684114 - L1PA12 LINE L1 -5579 2002 1594 2294 260 60 7 chr9 5587342 5588115 -136683329 - L1PA12 LINE L1 -4509 3072 2259 321 202 36 12 chr9 5588417 5588501 -136682943 - L1PA12 LINE L1 -5412 2169 2084 584 327 148 26 chr9 5588755 5589174 -136682270 - L1PA12 LINE L1 -6317 1257 788 4266 184 50 11 chr9 5589198 5590619 -136680825 + L1PB4 LINE L1 4321 5809 -347 315 0 0 0 chr9 5590619 5590654 -136680790 + (CA)n Simple_repeat Simple_repeat 2 36 0 4266 184 50 11 chr9 5590654 5591004 -136680440 + L1PB4 LINE L1 5809 6144 -12 251 239 71 9 chr9 5591010 5591123 -136680321 + HsTC2 DNA Tc2 251 370 -1528 1467 233 118 31 chr9 5591179 5592515 -136678929 + L1MEc LINE L1 1850 3286 -2929 4580 129 16 0 chr9 5592521 5593256 -136678188 + L1P3 LINE L1 2 748 -5713 9384 62 1 1 chr9 5593256 5595260 -136676184 + L1PA4 LINE L1 4145 6155 0 3057 52 0 5 chr9 5595318 5595706 -136675738 + L1PA7 LINE L1 5769 6154 0 2014 215 179 97 chr9 5595706 5596691 -136674753 + L1MEc LINE L1 3281 4184 -2031 740 142 17 0 chr9 5596691 5596811 -136674633 + AluSg/x SINE Alu 185 306 -6 2014 215 179 97 chr9 5596811 5597418 -136674026 + L1MEc LINE L1 4184 5133 -1082 9277 162 25 27 chr9 5597426 5599662 -136671782 + L1M1 LINE L1 1931 4166 -3399 2255 101 0 13 chr9 5599662 5599969 -136671475 + AluSq SINE Alu 1 303 -10 9277 162 25 27 chr9 5599969 5601593 -136669851 + L1M1 LINE L1 4166 5792 -1773 1608 141 42 15 chr9 5601594 5601857 -136669587 + AluJo SINE Alu 25 294 -18 975 188 11 21 chr9 5602851 5603037 -136668407 - MER5A DNA MER1_type -1 188 5 3913 173 58 13 chr9 5604260 5604698 -136666746 - L1MB7 LINE L1 -20 6164 5747 2147 122 0 10 chr9 5604698 5605002 -136666442 + AluSx SINE Alu 1 301 -11 3913 173 58 13 chr9 5605002 5605397 -136666047 - L1MB7 LINE L1 -437 5747 5294 212 0 36 0 chr9 5605974 5606002 -136665442 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 359 298 135 7 chr9 5606178 5606614 -136664830 + L1 LINE L1 3196 3687 -2459 21544 170 43 24 chr9 5606735 5608700 -136662744 + L1PA10 LINE L1 10 1937 -4546 2116 121 3 3 chr9 5608700 5608997 -136662447 - AluSq SINE Alu -15 298 2 21544 170 43 24 chr9 5608997 5612419 -136659025 + L1PA10 LINE L1 1937 5659 -824 2228 118 3 0 chr9 5612419 5612716 -136658728 + AluSx SINE Alu 1 298 -14 21544 170 43 24 chr9 5612716 5613557 -136657887 + L1PA10 LINE L1 5659 6483 0 4023 253 117 49 chr9 5613644 5614712 -136656732 + L2 LINE L2 1361 2355 -958 2403 73 0 3 chr9 5614712 5615012 -136656432 - AluY SINE Alu -12 299 1 4023 253 117 49 chr9 5615012 5615292 -136656152 + L2 LINE L2 2355 2614 -699 3612 123 13 8 chr9 5615292 5615814 -136655630 + MER1A DNA MER1_type 3 527 0 4023 253 117 49 chr9 5615814 5616290 -136655154 + L2 LINE L2 2614 3312 -1 244 303 40 0 chr9 5616385 5616484 -136654960 + L1 LINE L1 3987 4089 -2057 331 226 99 23 chr9 5616552 5616773 -136654671 + L1 LINE L1 4231 4468 -1678 3533 226 62 51 chr9 5616859 5617638 -136653806 + L1PA12 LINE L1 4 802 -6779 2230 127 3 0 chr9 5617638 5617945 -136653499 - AluSx SINE Alu -2 310 3 3533 226 62 51 chr9 5617945 5618351 -136653093 + L1PA12 LINE L1 802 1202 -6379 6383 79 34 0 chr9 5618355 5619791 -136651653 + L1PA11 LINE L1 4716 6174 0 5784 50 143 60 chr9 5619825 5620897 -136650547 + MER11A LTR ERVK 1 1266 0 342 324 115 61 chr9 5620899 5621341 -136650103 + L1ME3A LINE L1 4581 5046 -1100 568 325 99 11 chr9 5621486 5622036 -136649408 + L1ME3A LINE L1 5256 5847 -323 466 259 114 6 chr9 5622206 5622364 -136649080 + L2 LINE L2 3135 3309 -4 25 0 0 0 chr9 5622989 5623014 -136648430 + AT_rich Low_complexity Low_complexity 1 25 0 474 247 213 7 chr9 5623589 5623739 -136647705 + MER5A DNA MER1_type 9 189 0 197 167 24 0 chr9 5623918 5623960 -136647484 - L2 LINE L2 0 3313 3271 394 181 26 60 chr9 5624564 5624680 -136646764 + MER45 DNA AcHobo 1463 1574 -7 300 313 134 18 chr9 5624741 5624853 -136646591 - L2 LINE L2 -206 3066 2942 190 278 28 28 chr9 5625892 5625964 -136645480 + L2 LINE L2 3161 3232 -40 880 214 54 17 chr9 5626761 5627055 -136644389 + L1M1 LINE L1 3358 3662 -3903 2239 219 33 10 chr9 5627061 5627389 -136644055 + L1M1 LINE L1 4027 4377 -3188 2099 122 0 3 chr9 5627389 5627677 -136643767 + AluSx SINE Alu 1 287 -25 2239 219 33 10 chr9 5627677 5627955 -136643489 + L1M1 LINE L1 4377 4647 -2918 1882 255 49 89 chr9 5627950 5628976 -136642468 - L1P3 LINE L1 -5467 994 10 * 352 58 0 39 chr9 5629107 5629159 -136642285 + THE1B LTR MaLR 1 50 -314 1745 224 81 35 chr9 5629620 5630285 -136641159 - L1MD1 LINE L1 -5 6237 5542 912 278 67 9 chr9 5630417 5630853 -136640591 + MLT1C LTR MaLR 1 461 -6 233 200 0 0 chr9 5631358 5631408 -136640036 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 4717 129 6 0 chr9 5636137 5636864 -136634580 - L1PA16 LINE L1 -4 6162 5432 2829 258 50 30 chr9 5637754 5638991 -136632453 - L1MD1 LINE L1 -872 5274 4013 1162 238 84 35 chr9 5639223 5639685 -136631759 - L1MD1 LINE L1 0 6242 5758 416 341 17 12 chr9 5639808 5639981 -136631463 + MER5B DNA MER1_type 5 178 0 351 0 0 0 chr9 5640301 5640340 -136631104 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 0 0 0 chr9 5640926 5640948 -136630496 + AT_rich Low_complexity Low_complexity 1 22 0 2858 122 7 5 chr9 5643733 5644160 -136627284 - MSTA LTR MaLR 0 428 1 380 305 19 0 chr9 5644303 5644457 -136626987 - MER5B DNA MER1_type -21 157 1 232 229 33 0 chr9 5645480 5645541 -136625903 - MER5B DNA MER1_type -33 145 83 243 71 214 0 chr9 5645544 5645586 -136625858 + LTR50 LTR ERVL 272 322 -473 595 215 19 65 chr9 5645736 5645997 -136625447 + L1MA4 LINE L1 3210 3458 -4107 * 11406 169 21 41 chr9 5645994 5646555 -136624889 + L1MA4 LINE L1 4156 4727 -2992 2229 114 0 7 chr9 5646555 5646862 -136624582 + AluSx SINE Alu 3 307 -5 11406 169 21 41 chr9 5646862 5649937 -136621507 + L1MA4 LINE L1 4727 7712 -7 900 125 33 20 chr9 5651522 5651674 -136619770 - MSTC LTR MaLR -273 155 2 2030 249 69 25 chr9 5651836 5652530 -136618914 + L1MD1 LINE L1 5509 6233 -9 230 207 0 0 chr9 5652533 5652591 -136618853 + L1MA8 LINE L1 5291 5348 -823 422 163 12 12 chr9 5652602 5652688 -136618756 + L1MB3 LINE L1 6081 6166 -17 1786 178 55 17 chr9 5652708 5653125 -136618319 + L1MA8 LINE L1 5843 6275 -16 356 264 91 30 chr9 5653132 5653363 -136618081 + L1M4 LINE L1 5 249 -6293 356 222 60 26 chr9 5653636 5653753 -136617691 + L1M4 LINE L1 802 922 -5724 231 229 0 0 chr9 5653805 5653853 -136617591 + L1M4 LINE L1 1412 1459 -5116 1752 136 0 4 chr9 5653855 5654112 -136617332 - AluSx SINE Alu -8 304 49 1253 289 43 36 chr9 5654148 5654678 -136616766 + L1M3e LINE L1 1439 1972 -5058 * 5375 48 12 2 chr9 5654677 5655580 -136615864 + L1PA7 LINE L1 5020 5928 -226 1077 137 11 42 chr9 5655580 5655770 -136615674 - THE1B LTR MaLR -180 184 1 1726 150 13 37 chr9 5656282 5656582 -136614862 - AluJo SINE Alu -19 293 1 24 91 0 0 chr9 5657059 5657125 -136614319 + AT_rich Low_complexity Low_complexity 1 66 0 357 326 17 34 chr9 5658130 5658308 -136613136 - MER5B DNA MER1_type -3 175 1 2561 184 8 6 chr9 5658420 5658893 -136612551 + MER101 LTR ERV1 1 474 0 1428 219 66 22 chr9 5658932 5659385 -136612059 + L1MD1 LINE L1 5770 6242 0 2409 228 78 50 chr9 5659655 5660018 -136611426 + L1MB2 LINE L1 4076 4427 -1719 3654 88 32 4 chr9 5660018 5660515 -136610929 + MER9 LTR ERVK 1 511 0 2409 228 78 50 chr9 5660515 5661124 -136610320 + L1MB2 LINE L1 4427 5075 -1071 228 265 163 25 chr9 5661169 5661365 -136610079 + L1MB2 LINE L1 5052 5274 -872 23 0 0 0 chr9 5661697 5661720 -136609724 + AT_rich Low_complexity Low_complexity 1 23 0 21339 173 39 18 chr9 5661911 5667651 -136603793 + L1PA11 LINE L1 914 7609 -3 441 0 0 0 chr9 5667823 5667872 -136603572 + (TG)n Simple_repeat Simple_repeat 1 49 0 1586 128 28 17 chr9 5668374 5668663 -136602781 + LTR22B LTR ERVK 1 292 -200 12290 97 10 1 chr9 5668663 5670320 -136601124 + HERVK22 LTR ERVK 5165 6837 0 2594 140 30 34 chr9 5670320 5670814 -136600630 + LTR22B LTR ERVK 1 492 0 1274 139 29 8 chr9 5673816 5674054 -136597390 + L1MA4 LINE L1 6046 6288 -12 192 326 58 0 chr9 5675335 5675421 -136596023 - L2 LINE L2 -23 3290 3200 1005 214 150 20 chr9 5675724 5676070 -136595374 - MLT1C LTR MaLR -17 450 60 1793 191 42 35 chr9 5676076 5676501 -136594943 - MSTC LTR MaLR 0 428 1 1433 233 50 94 chr9 5676658 5677372 -136594072 + L1MD1 LINE L1 5546 6228 -14 3467 227 38 15 chr9 5677380 5678223 -136593221 + L1MB2 LINE L1 5291 6152 -19 1937 161 79 12 chr9 5678251 5678668 -136592776 + L1MA8 LINE L1 5843 6287 -4 321 254 85 34 chr9 5678674 5678907 -136592537 + L1M4c LINE L1 467 955 -6082 423 0 0 0 chr9 5679098 5679145 -136592299 + (CA)n Simple_repeat Simple_repeat 2 48 0 366 301 175 6 chr9 5679228 5679554 -136591890 + L1M4c LINE L1 1266 1646 -5462 7963 14 0 0 chr9 5679571 5680827 -136590617 - L1HS LINE L1 0 6155 4900 * 18776 24 0 0 chr9 5680822 5683054 -136588390 + L1HS LINE L1 2673 4904 -1242 443 217 24 63 chr9 5683049 5683256 -136588188 + L1M4c LINE L1 1629 1827 -5281 * 1282 313 47 5 chr9 5683251 5683999 -136587445 + L1 LINE L1 3547 4325 -1821 2742 280 44 26 chr9 5684001 5686176 -136585268 + L1M3c LINE L1 1224 3166 -3940 7145 50 0 0 chr9 5686176 5687186 -136584258 - L1PA7 LINE L1 -5 6149 5139 2742 280 44 26 chr9 5687186 5687356 -136584088 + L1M3c LINE L1 3166 3332 -3774 988 173 42 0 chr9 5687390 5687581 -136583863 + L1PB1 LINE L1 2 200 -6663 11272 131 70 16 chr9 5687581 5690800 -136580644 + L1PB1 LINE L1 634 3678 -3189 339 25 0 0 chr9 5690800 5690840 -136580604 + (CA)n Simple_repeat Simple_repeat 2 41 0 11272 131 70 16 chr9 5690840 5691188 -136580256 + L1PB1 LINE L1 3678 6866 -1 2265 252 26 6 chr9 5691198 5691881 -136579563 + L1M3c LINE L1 3348 4044 -3062 760 271 80 3 chr9 5691873 5692246 -136579198 + L1 LINE L1 2810 3211 -2935 * 5292 166 26 7 chr9 5692249 5693980 -136577464 - L1PB4 LINE L1 -12 6847 4892 12912 155 23 31 chr9 5693984 5697371 -136574073 - L1PA6 LINE L1 0 6154 2789 454 128 23 23 chr9 5697382 5697468 -136573976 - L1PB4 LINE L1 -3362 3487 3402 17886 118 37 20 chr9 5697468 5698670 -136572774 - MER57B-int LTR ERV1 -744 6793 5613 6710 112 27 18 chr9 5698670 5699731 -136571713 + MER11C LTR ERVK 1 1071 0 17886 118 37 20 chr9 5699731 5701665 -136569779 - MER57B-int LTR ERV1 -1924 5613 1276 889 124 29 0 chr9 5701675 5701812 -136569632 - MER57B-int LTR ERV1 -4616 2921 2781 699 157 0 9 chr9 5701808 5701923 -136569521 - MER57B-int LTR ERV1 -3929 2017 1904 * 3604 135 45 10 chr9 5701924 5702494 -136568950 - MER57B-int LTR ERV1 -4231 3585 3037 204 40 0 0 chr9 5702494 5702519 -136568925 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3604 135 45 10 chr9 5702519 5702722 -136568722 - MER57B-int LTR ERV1 -4779 3037 648 1264 109 0 0 chr9 5702714 5702889 -136568555 - MER57B-int LTR ERV1 -6570 967 793 * 4334 130 24 13 chr9 5702877 5703554 -136567890 - MER57B-int LTR ERV1 -6853 684 1 2523 138 35 19 chr9 5703554 5703981 -136567463 - MER57B LTR ERV1 0 434 1 2519 255 60 64 chr9 5703982 5706064 -136565380 - L1PB4 LINE L1 -3674 3175 987 981 313 26 55 chr9 5706170 5706861 -136564583 - L1PB4 LINE L1 -6176 673 3 3646 180 41 51 chr9 5706862 5707891 -136563553 - L1MCa LINE L1 -4588 1838 731 399 248 19 9 chr9 5708954 5709059 -136562385 - LTR39 LTR ERV1 -81 702 597 1092 198 18 94 chr9 5709137 5709476 -136561968 - LTR39 LTR ERV1 -467 316 4 764 299 43 4 chr9 5709616 5709850 -136561594 - MIR SINE MIR 0 262 20 6105 140 11 25 chr9 5710320 5711344 -136560100 + MSTA-int LTR MaLR 572 1580 0 1764 150 203 11 chr9 5711344 5711703 -136559741 + MSTA LTR MaLR 1 428 0 5384 167 33 10 chr9 5712295 5713324 -136558120 - Ricksha_b DNA DNA -13 1241 240 609 197 71 0 chr9 5713335 5713462 -136557982 - Ricksha_b DNA DNA -1117 137 2 3093 235 44 20 chr9 5714100 5714892 -136556552 + L1MCa LINE L1 1 811 -5615 2800 212 16 18 chr9 5714888 5715671 -136555773 + L1PA15-16 LINE L1 1637 2428 -4369 * 2614 111 16 18 chr9 5715739 5716126 -136555318 + MSTB1 LTR MaLR 1 386 -46 5691 146 4 10 chr9 5716126 5717402 -136554042 + L1PA15 LINE L1 4879 6144 -21 2831 245 136 73 chr9 5717419 5718204 -136553240 + L1M4 LINE L1 2247 2982 -3164 1857 169 5 66 chr9 5718204 5718631 -136552813 + MER57A LTR ERV1 3 403 0 2831 245 136 73 chr9 5718631 5718910 -136552534 + L1M4 LINE L1 2982 3242 -2904 2014 139 0 0 chr9 5718910 5719204 -136552240 + AluSx SINE Alu 1 294 -18 2831 245 136 73 chr9 5719204 5719521 -136551923 + L1M4 LINE L1 3242 3538 -2608 2178 108 14 0 chr9 5719521 5719807 -136551637 + AluSc SINE Alu 1 290 -19 2831 245 136 73 chr9 5719807 5719868 -136551576 + L1M4 LINE L1 3538 3594 -2552 13526 89 9 0 chr9 5719868 5722579 -136548865 + L1PA8 LINE L1 3425 6170 -2 2831 245 136 73 chr9 5722579 5722877 -136548567 + L1M4 LINE L1 3594 4099 -2047 2198 166 42 14 chr9 5722886 5723319 -136548125 + L1MA7 LINE L1 5528 5972 -328 830 228 30 42 chr9 5723318 5723555 -136547889 + L1MCb LINE L1 605 838 -5207 * 2645 200 73 10 chr9 5723566 5724265 -136547179 + L1MCb LINE L1 893 1635 -4929 934 194 0 0 chr9 5724269 5724439 -136547005 + L1MB4 LINE L1 3999 4168 -1978 2092 269 75 28 chr9 5724471 5725287 -136546157 - L1M2 LINE L1 -6005 1204 1 1542 145 25 0 chr9 5725291 5725573 -136545871 + L1MA7 LINE L1 6001 6289 -2 3307 168 22 58 chr9 5725599 5725958 -136545486 + L1MB4 LINE L1 5435 5805 -375 339 25 0 0 chr9 5725958 5725998 -136545446 + (TG)n Simple_repeat Simple_repeat 2 41 0 3307 168 22 58 chr9 5725998 5726412 -136545032 + L1MB4 LINE L1 5805 6180 0 5336 179 21 21 chr9 5726416 5726704 -136544740 + L1MC2 LINE L1 5023 5309 -1035 12522 161 19 15 chr9 5726704 5728153 -136543291 - L1PA11 LINE L1 -4 6170 4729 197 33 33 0 chr9 5728153 5728183 -136543261 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 12522 161 19 15 chr9 5728183 5729876 -136541568 - L1PA11 LINE L1 -1445 4729 3022 5336 179 21 21 chr9 5729876 5730902 -136540542 + L1MC2 LINE L1 5309 6343 -1 1048 161 15 62 chr9 5730902 5731151 -136540293 + L1MC2 LINE L1 6089 6336 -8 342 256 82 73 chr9 5731488 5731721 -136539723 + MLT1J LTR MaLR 61 333 -178 31776 107 14 18 chr9 5732554 5738946 -136532498 + L1PA7 LINE L1 10 6469 0 193 345 101 17 chr9 5741679 5741798 -136529646 - L3b LINE CR1 -99 1484 1356 27 29 0 0 chr9 5741924 5741958 -136529486 + AT_rich Low_complexity Low_complexity 1 34 0 366 290 101 5 chr9 5742406 5742623 -136528821 + L1ME4a LINE L1 5645 5882 -239 396 0 0 0 chr9 5745132 5745176 -136526268 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr9 5745175 5745200 -136526244 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1978 116 7 0 chr9 5745869 5746146 -136525298 - AluSq SINE Alu 0 313 35 274 250 107 68 chr9 5746626 5746831 -136524613 + MLT1J LTR MaLR 61 311 -200 703 19 48 0 chr9 5746991 5747096 -136524348 + (TAGA)n Simple_repeat Simple_repeat 2 111 0 21 0 0 0 chr9 5747642 5747663 -136523781 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5747814 5747836 -136523608 + AT_rich Low_complexity Low_complexity 1 22 0 2370 190 51 0 chr9 5748430 5748919 -136522525 + LTR53 LTR ERVL 6 519 0 195 357 97 32 chr9 5749013 5749321 -136522123 + L2 LINE L2 2634 2961 -353 1992 146 73 2 chr9 5750336 5750760 -136520684 - L1MCa LINE L1 -4112 2314 1861 933 18 0 0 chr9 5751598 5751707 -136519737 - L1PA2 LINE L1 0 6155 6047 487 20 2 0 chr9 5751707 5751780 -136519664 + L1M LINE L1 5279 5352 -812 2939 206 35 21 chr9 5752504 5753309 -136518135 - L1 LINE L1 -3153 2993 2178 786 158 0 29 chr9 5753316 5753487 -136517957 - L1MA7 LINE L1 0 6291 6126 5039 237 98 6 chr9 5753488 5754752 -136516692 + L1M2a LINE L1 -779 600 -5783 4162 222 48 29 chr9 5754746 5756079 -136515365 + L1M2a LINE L1 911 2064 -4320 * 4535 64 25 3 chr9 5756079 5756671 -136514773 - L1PA7 LINE L1 0 6154 5550 4162 222 48 29 chr9 5756671 5757101 -136514343 + L1M2a LINE L1 2064 2484 -3900 896 133 0 0 chr9 5757117 5757237 -136514207 + AluSg/x SINE Alu 174 293 -17 1077 225 44 24 chr9 5757438 5757767 -136513677 + L1MC/D LINE L1 5263 5601 -2207 297 51 0 0 chr9 5757767 5757806 -136513638 + (TG)n Simple_repeat Simple_repeat 2 40 0 869 131 0 8 chr9 5757823 5757945 -136513499 - AluSq/x SINE Alu -192 121 1 2197 121 0 0 chr9 5759760 5760057 -136511387 - AluSx SINE Alu -14 298 2 2020 143 0 7 chr9 5760143 5760443 -136511001 - AluSx SINE Alu -14 298 1 238 304 328 12 chr9 5761103 5761353 -136510091 + L2 LINE L2 2984 3312 -1 268 225 36 0 chr9 5761359 5761470 -136509974 + GA-rich Low_complexity Low_complexity 3 117 0 432 222 116 62 chr9 5762631 5763148 -136508296 + MER34 LTR ERV1 42 542 0 1882 148 3 7 chr9 5763536 5763843 -136507601 + AluSx SINE Alu 1 306 0 33 43 0 0 chr9 5764839 5764886 -136506558 + AT_rich Low_complexity Low_complexity 1 47 0 494 292 149 11 chr9 5766004 5766367 -136505077 - LTR33 LTR ERVL -87 434 22 22 0 0 0 chr9 5766669 5766691 -136504753 + AT_rich Low_complexity Low_complexity 1 22 0 22418 112 13 29 chr9 5766701 5768794 -136502650 + L1P LINE L1 11 2136 -4010 2855 22 0 0 chr9 5768794 5769111 -136502333 + AluYb8 SINE Alu 1 317 -1 22418 112 13 29 chr9 5769111 5770129 -136501315 + L1P LINE L1 2136 3054 -3092 2410 84 0 0 chr9 5770129 5770438 -136501006 + AluY SINE Alu 1 309 -2 22418 112 13 29 chr9 5770438 5771119 -136500325 + L1P LINE L1 3054 3744 -2402 3835 56 14 0 chr9 5771119 5771600 -136499844 + L1PA6 LINE L1 5660 6152 -2 507 329 18 28 chr9 5771615 5772004 -136499440 + L1MC4a LINE L1 5548 5932 -1876 2199 84 24 10 chr9 5772393 5772689 -136498755 - AluSq SINE Alu -13 300 1 6320 136 8 1 chr9 5773049 5774110 -136497334 + L1P LINE L1 3242 4310 -1836 261 0 0 0 chr9 5776762 5776791 -136494653 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 5777108 5777132 -136494312 + AT_rich Low_complexity Low_complexity 1 24 0 283 276 126 14 chr9 5777575 5777789 -136493655 + L1ME4a LINE L1 5645 5882 -239 21 0 0 0 chr9 5780233 5780254 -136491190 + AT_rich Low_complexity Low_complexity 1 21 0 194 146 0 24 chr9 5780296 5780337 -136491107 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 2032 104 0 22 chr9 5781008 5781286 -136490158 - AluSq SINE Alu -7 306 35 4244 220 59 15 chr9 5781626 5782246 -136489198 + L1MA9 LINE L1 2527 3118 -3028 2141 145 3 0 chr9 5782246 5782557 -136488887 - AluSx SINE Alu 0 312 1 4244 220 59 15 chr9 5782557 5783234 -136488210 + L1MA9 LINE L1 3118 3881 -2265 2842 99 9 5 chr9 5783242 5783664 -136487780 + L1PB1 LINE L1 5728 6151 0 1711 134 39 36 chr9 5783703 5784039 -136487405 + L1MC3 LINE L1 7441 7777 -8 504 295 5 37 chr9 5784126 5784316 -136487128 + MIR SINE MIR 78 261 -1 4392 181 22 22 chr9 5784397 5785396 -136486048 + L1MA6 LINE L1 5299 6297 -3 6281 192 17 40 chr9 5785401 5786880 -136484564 + L1MA9 LINE L1 3928 5439 -873 2744 20 0 0 chr9 5786880 5787185 -136484259 + AluY SINE Alu 1 305 -6 6281 192 17 40 chr9 5787185 5787585 -136483859 + L1MA9 LINE L1 5439 5757 -555 195 42 0 0 chr9 5787585 5787609 -136483835 + (TG)n Simple_repeat Simple_repeat 1 24 0 6281 192 17 40 chr9 5787609 5788072 -136483372 + L1MA9 LINE L1 5757 6229 -83 351 164 0 0 chr9 5788097 5788152 -136483292 - MER2 DNA MER2_type -10 335 281 * 638 278 11 6 chr9 5788126 5788302 -136483142 - MER8 DNA MER2_type -60 179 3 692 244 121 22 chr9 5788454 5788819 -136482625 - L1M1 LINE L1 -4200 3365 2965 1058 181 0 0 chr9 5788819 5788990 -136482454 + AluSg/x SINE Alu 132 302 -8 2305 269 57 12 chr9 5788990 5789364 -136482080 - L1M2 LINE L1 -4271 2897 2541 2315 90 3 0 chr9 5789364 5789665 -136481779 - AluY SINE Alu -9 302 1 2305 269 57 12 chr9 5789665 5790499 -136480945 - L1M2 LINE L1 -4627 2541 1623 306 106 0 0 chr9 5791307 5791354 -136480090 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 250 25 50 chr9 5791606 5791726 -136479718 - L1MC5 LINE L1 -44 7917 7801 426 184 117 81 chr9 5791767 5791990 -136479454 - L1ME2 LINE L1 -24 6140 5910 21 0 0 0 chr9 5794571 5794592 -136476852 + AT_rich Low_complexity Low_complexity 1 21 0 316 316 105 0 chr9 5794674 5794807 -136476637 + MIR3 SINE MIR 52 198 -10 27 0 0 0 chr9 5795516 5795543 -136475901 + AT_rich Low_complexity Low_complexity 1 27 0 250 313 70 62 chr9 5796384 5796661 -136474783 + L2 LINE L2 2755 3028 -244 695 255 39 77 chr9 5796807 5797117 -136474327 + L2 LINE L2 3010 3307 -6 459 278 125 37 chr9 5797397 5797613 -136473831 + MIR SINE MIR 23 257 -5 22 0 0 0 chr9 5797854 5797876 -136473568 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 5797893 5797925 -136473519 + AT_rich Low_complexity Low_complexity 1 32 0 1900 131 48 3 chr9 5798832 5799122 -136472322 - AluSx SINE Alu -9 303 1 1799 203 71 30 chr9 5799577 5800084 -136471360 + MER63C DNA MER1_type 1 528 -402 779 214 99 5 chr9 5800085 5800286 -136471158 - MER58A DNA MER1_type -4 220 1 1270 211 53 65 chr9 5800286 5800704 -136470740 + MER63C DNA MER1_type 518 930 0 201 225 87 55 chr9 5801164 5801262 -136470182 + MIR SINE MIR 85 187 -55 492 213 21 112 chr9 5803854 5804042 -136467402 + MER5B DNA MER1_type 4 174 -4 4056 200 48 46 chr9 5804147 5805233 -136466211 + L1MC3 LINE L1 6018 7105 -680 316 247 12 0 chr9 5805235 5805320 -136466124 + MLT1F1 LTR MaLR 39 124 -443 897 234 62 4 chr9 5805339 5805613 -136465831 + L1MC3 LINE L1 7495 7784 -1 1806 183 13 38 chr9 5806330 5806779 -136464665 + L1 LINE L1 3952 4389 -1757 417 81 0 0 chr9 5806779 5806841 -136464603 + (CA)n Simple_repeat Simple_repeat 2 63 0 5842 109 28 2 chr9 5806855 5808512 -136462932 + L1PA16 LINE L1 4480 6165 -1 6657 47 37 6 chr9 5808516 5809888 -136461556 + L1PA7 LINE L1 4778 6177 0 2536 100 17 0 chr9 5811077 5811426 -136460018 + THE1A LTR MaLR 1 355 0 2003 90 4 4 chr9 5811759 5812015 -136459429 - AluSc SINE Alu -17 292 37 225 337 49 18 chr9 5812176 5812339 -136459105 - LTR67 LTR ERVL -19 538 371 451 219 50 17 chr9 5812647 5812766 -136458678 - MIR SINE MIR -111 151 29 189 331 44 37 chr9 5812951 5813087 -136458357 + L2 LINE L2 1772 1908 -1406 1433 196 79 0 chr9 5813290 5813570 -136457874 + AluJb SINE Alu 1 302 0 297 338 89 14 chr9 5813723 5813936 -136457508 + L2 LINE L2 2088 2316 -998 276 369 130 27 chr9 5813981 5814312 -136457132 + L2 LINE L2 2549 2913 -401 270 309 128 21 chr9 5814326 5814420 -136457024 + MIR SINE MIR 20 123 -139 3375 144 20 8 chr9 5815457 5816061 -136455383 + L1MB3 LINE L1 5478 6088 -95 644 250 60 6 chr9 5816073 5816249 -136455195 + MIR SINE MIR 7 185 -27 296 236 27 73 chr9 5816249 5816359 -136455085 + L1MC4a LINE L1 5530 5634 -2174 183 42 0 0 chr9 5816409 5816433 -136455011 + (CAT)n Simple_repeat Simple_repeat 2 25 0 317 217 60 0 chr9 5816446 5816529 -136454915 + L1MC4a LINE L1 5835 5922 -1886 192 77 0 0 chr9 5816537 5816563 -136454881 + (CATA)n Simple_repeat Simple_repeat 3 28 0 25 31 0 0 chr9 5816745 5816777 -136454667 + AT_rich Low_complexity Low_complexity 1 32 0 398 295 10 82 chr9 5817831 5818038 -136453406 + HAL1 LINE L1 762 953 -1554 572 228 66 12 chr9 5818190 5818357 -136453087 + L1ME3A LINE L1 5836 6011 -159 317 324 86 31 chr9 5818414 5818810 -136452634 + L1ME LINE L1 2397 2824 -3322 604 163 108 0 chr9 5819144 5819273 -136452171 - MER3 DNA MER1_type -1 208 66 513 323 86 14 chr9 5819400 5819830 -136451614 + L1ME LINE L1 5338 5798 -323 2393 76 0 16 chr9 5819855 5820171 -136451273 + AluY SINE Alu 1 311 0 268 271 29 71 chr9 5820171 5820311 -136451133 - MIR SINE MIR -2 260 127 * 809 253 53 32 chr9 5820287 5820572 -136450872 + L2 LINE L2 3021 3311 -2 1818 129 97 23 chr9 5820581 5820930 -136450514 + THE1C LTR MaLR 1 375 0 2337 121 3 16 chr9 5820951 5821331 -136450113 + THE1-int LTR MaLR 549 923 -657 235 174 0 0 chr9 5821382 5821428 -136450016 - MSTA LTR MaLR 0 428 383 619 305 103 47 chr9 5822126 5822691 -136448753 - L2 LINE L2 -217 3055 2454 1127 233 99 35 chr9 5822697 5823131 -136448313 + MLT1C LTR MaLR 6 467 0 3366 104 87 0 chr9 5823161 5823643 -136447801 - MER1A DNA MER1_type 0 527 4 251 318 73 0 chr9 5823664 5823774 -136447670 - L2 LINE L2 -896 2418 2301 205 316 131 53 chr9 5823837 5824081 -136447363 - L2 LINE L2 -1018 2296 2034 25 0 0 0 chr9 5824660 5824685 -136446759 + AT_rich Low_complexity Low_complexity 1 25 0 438 296 10 36 chr9 5824742 5824938 -136446506 - L2 LINE L2 -410 2904 2714 815 88 0 0 chr9 5825119 5825221 -136446223 - AluY SINE Alu -162 149 48 1480 257 41 33 chr9 5825511 5826024 -136445420 + LTR40a LTR ERVL 3 519 0 1072 165 46 46 chr9 5826114 5826332 -136445112 + MER20 DNA MER1_type 2 219 0 416 325 8 0 chr9 5826669 5826786 -136444658 - L2 LINE L2 -380 2934 2817 287 329 206 0 chr9 5826803 5826949 -136444495 - MER5A DNA MER1_type 0 189 14 542 250 68 0 chr9 5826961 5827093 -136444351 - L2 LINE L2 -505 2809 2669 1398 246 55 14 chr9 5827125 5827564 -136443880 + L1ME3 LINE L1 5698 6154 -8 750 254 17 0 chr9 5827585 5827762 -136443682 - L2 LINE L2 -647 2667 2488 1139 251 52 25 chr9 5827772 5828134 -136443310 - L2 LINE L2 -1010 2304 1933 182 265 20 0 chr9 5828157 5828206 -136443238 + MIR SINE MIR 202 251 -11 792 229 6 0 chr9 5828530 5828687 -136442757 + MIR SINE MIR 102 259 -3 2038 215 45 6 chr9 5828706 5829241 -136442203 - MER90 LTR ERV1 0 575 20 180 296 28 42 chr9 5829426 5829497 -136441947 + L3 LINE CR1 276 345 -1232 321 118 0 0 chr9 5829964 5830015 -136441429 + (TG)n Simple_repeat Simple_repeat 2 52 0 184 239 65 0 chr9 5830481 5830527 -136440917 + MIR SINE MIR 158 206 -56 184 224 0 61 chr9 5831065 5831114 -136440330 - L2 LINE L2 -2886 428 383 750 291 45 5 chr9 5832320 5832543 -136438901 + MIR SINE MIR 30 261 -1 2389 102 0 0 chr9 5832609 5832914 -136438530 - AluSx SINE Alu -7 305 1 2328 94 0 0 chr9 5834179 5834478 -136436966 - AluSx SINE Alu -6 306 8 2304 112 0 0 chr9 5835661 5835965 -136435479 - AluSx SINE Alu -7 305 2 2193 117 0 29 chr9 5836051 5836367 -136435077 - AluSx SINE Alu -5 307 1 299 261 318 15 chr9 5837032 5837296 -136434148 + L2 LINE L2 2969 3312 -1 329 266 0 8 chr9 5837298 5837426 -136434018 + GA-rich Low_complexity Low_complexity 3 129 0 454 249 98 61 chr9 5838576 5839096 -136432348 + LTR48 LTR ERV1 1 787 0 1987 120 3 7 chr9 5839479 5839795 -136431649 + AluSx SINE Alu 1 315 0 189 361 76 25 chr9 5840413 5840532 -136430912 + L2 LINE L2 3188 3312 -1 26 64 0 0 chr9 5840791 5840838 -136430606 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 5841575 5841596 -136429848 + AT_rich Low_complexity Low_complexity 1 21 0 671 280 123 23 chr9 5841995 5842424 -136429020 - LTR33 LTR ERVL -28 493 22 2536 71 0 3 chr9 5842987 5843297 -136428147 - AluSq SINE Alu -4 309 1 11439 109 13 3 chr9 5843654 5846540 -136424904 + L1PA10 LINE L1 3242 6158 -10 836 104 24 0 chr9 5846540 5846658 -136424786 + L1PB3 LINE L1 6020 6147 -7 224 281 90 0 chr9 5847239 5847328 -136424116 + L2 LINE L2 3217 3313 0 180 77 0 0 chr9 5847651 5847677 -136423767 + (TG)n Simple_repeat Simple_repeat 1 26 0 5348 191 36 8 chr9 5847918 5848926 -136422518 + MST-int LTR MaLR 51 1086 -565 3114 75 18 5 chr9 5848926 5849324 -136422120 + MLT2A1 LTR ERVL 1 403 -41 1904 158 22 33 chr9 5849324 5849684 -136421760 + THE1-int LTR MaLR 1065 1420 -160 28 61 0 0 chr9 5849809 5849858 -136421586 + AT_rich Low_complexity Low_complexity 1 49 0 1277 126 177 52 chr9 5850030 5850301 -136421143 + AluSg1 SINE Alu 5 309 0 242 174 22 0 chr9 5850356 5850402 -136421042 - MER65C LTR ERV1 -312 149 103 2298 121 0 3 chr9 5850874 5851187 -136420257 + AluSx SINE Alu 1 312 0 487 279 16 8 chr9 5851237 5851366 -136420078 - MIR SINE MIR -108 154 25 7959 253 74 40 chr9 5851578 5852120 -136419324 + L1MC4a LINE L1 4475 4997 -2811 1277 199 224 9 chr9 5852120 5852446 -136418998 + MSTD LTR MaLR 1 396 0 7959 253 74 40 chr9 5852446 5853083 -136418361 + L1MC4a LINE L1 4997 5611 -2197 2495 181 66 25 chr9 5853083 5853568 -136417876 + MLT1D LTR MaLR 1 505 0 7959 253 74 40 chr9 5853568 5853943 -136417501 + L1MC4a LINE L1 5611 5972 -1836 2137 117 0 3 chr9 5853943 5854233 -136417211 - AluSx SINE Alu -16 296 8 7959 253 74 40 chr9 5854233 5855901 -136415543 + L1MC4a LINE L1 5972 7807 -1 1459 207 43 6 chr9 5857083 5857431 -136414013 + L1MB5 LINE L1 4922 5282 -864 4161 177 7 45 chr9 5859321 5860184 -136411260 + L1MB5 LINE L1 5328 6157 -17 1395 265 84 25 chr9 5860797 5861364 -136410080 + L2 LINE L2 2712 3313 0 382 278 17 57 chr9 5861392 5861568 -136409876 - MIR SINE MIR -2 260 92 899 220 76 73 chr9 5861571 5861968 -136409476 + L1MC5 LINE L1 6827 7228 -733 784 294 54 21 chr9 5862010 5862417 -136409027 + L1MC5 LINE L1 7260 7630 -178 296 317 128 4 chr9 5862678 5862899 -136408545 - HAL1b LINE L1 -701 1651 400 324 284 92 37 chr9 5862989 5863098 -136408346 + L2 LINE L2 3158 3272 0 268 150 0 50 chr9 5863339 5863399 -136408045 + L2 LINE L2 1951 2007 -1307 1040 193 0 6 chr9 5863462 5863643 -136407801 - AluJb SINE Alu 0 312 133 390 142 83 24 chr9 5863643 5863812 -136407632 + (TA)n Simple_repeat Simple_repeat 2 180 0 343 80 94 25 chr9 5863841 5864068 -136407376 + (TA)n Simple_repeat Simple_repeat 1 242 0 335 144 56 25 chr9 5864103 5864263 -136407181 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 31 68 0 0 chr9 5864263 5864322 -136407122 + AT_rich Low_complexity Low_complexity 1 59 0 321 86 36 64 chr9 5864324 5864464 -136406980 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 279 93 0 0 chr9 5864478 5864521 -136406923 + (GA)n Simple_repeat Simple_repeat 1 43 0 506 171 207 18 chr9 5864543 5864654 -136406790 - AluJb SINE Alu -92 220 89 267 238 89 89 chr9 5865413 5865514 -136405930 + MER5B DNA MER1_type 74 174 -4 1336 194 184 45 chr9 5866405 5866778 -136404666 + LTR40c LTR ERVL 1 435 -30 2912 203 88 33 chr9 5866778 5867473 -136403971 + MER44D DNA MER2_type 1 605 0 1336 194 184 45 chr9 5867473 5867502 -136403942 + LTR40c LTR ERVL 435 459 -6 299 302 17 64 chr9 5867536 5867708 -136403736 + HERVL40 LTR ERVL 20 183 -5347 903 218 68 33 chr9 5867818 5868171 -136403273 + HERVL40 LTR ERVL 918 1353 -4177 1700 184 0 13 chr9 5868459 5868768 -136402676 - AluJo SINE Alu -1 311 7 292 247 82 112 chr9 5868796 5868966 -136402478 + HERVL40 LTR ERVL 1380 1544 -3986 1936 162 141 62 chr9 5869142 5869575 -136401869 - MLT1C LTR MaLR 0 467 1 525 227 61 45 chr9 5869575 5869707 -136401737 + HERVL40 LTR ERVL 2682 2815 -2715 1137 239 81 25 chr9 5869753 5870038 -136401406 + LTR40a LTR ERVL 218 518 -1 635 196 240 11 chr9 5870320 5870499 -136400945 - MIR SINE MIR -38 224 5 1468 171 132 48 chr9 5870736 5871030 -136400414 - MLT1D LTR MaLR -2 503 172 2095 121 27 0 chr9 5871030 5871327 -136400117 + AluSx SINE Alu 1 305 -7 1468 171 132 48 chr9 5871327 5871389 -136400055 - MLT1D LTR MaLR -333 172 117 394 278 79 0 chr9 5871888 5872014 -136399430 + MIR3 SINE MIR 50 185 -23 6025 116 47 21 chr9 5872257 5875111 -136396333 + SVA Other Other 19 1386 0 301 255 277 16 chr9 5878463 5878647 -136392797 + MIR SINE MIR 3 234 -28 187 268 0 0 chr9 5878619 5878660 -136392784 + L2 LINE L2 3211 3251 -21 * 633 225 98 140 chr9 5878670 5879070 -136392374 - LTR33 LTR ERVL -138 383 1 3170 39 0 0 chr9 5879079 5879439 -136392005 - L1PA5 LINE L1 0 6154 5795 2007 161 26 77 chr9 5880086 5880577 -136390867 - MER31B LTR ERV1 0 466 1 1115 289 82 17 chr9 5880673 5881137 -136390307 + LTR33 LTR ERVL 12 505 -16 211 281 0 0 chr9 5881375 5881432 -136390012 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 257 223 36 0 chr9 5881566 5881676 -136389768 - L1MC3 LINE L1 -1139 6702 6571 238 232 29 14 chr9 5881626 5881695 -136389749 + L1MCa LINE L1 1995 2064 -4362 * 263 333 0 0 chr9 5881718 5881808 -136389636 + L1MC4 LINE L1 6614 6703 -1339 231 314 47 0 chr9 5881816 5881902 -136389542 - L1MC4 LINE L1 -1339 6703 6614 3296 145 41 23 chr9 5882451 5883015 -136388429 - L1MB7 LINE L1 -19 6165 5592 1077 219 23 0 chr9 5883074 5883289 -136388155 + MIR SINE MIR 9 228 -34 366 239 0 54 chr9 5883965 5884057 -136387387 + MER21B LTR ERV1 1 87 -776 1248 226 124 6 chr9 5884080 5884403 -136387041 + MER21B LTR ERV1 20 380 -483 4348 39 8 0 chr9 5884507 5885020 -136386424 - L1PA5 LINE L1 -384 5770 5254 3354 58 2 2 chr9 5885031 5885430 -136386014 + L1PA5 LINE L1 5755 6153 -1 241 176 27 0 chr9 5885982 5886056 -136385388 + (TA)n Simple_repeat Simple_repeat 2 77 0 521 311 102 22 chr9 5886073 5886674 -136384770 + L2 LINE L2 2458 3174 -139 269 257 112 73 chr9 5887885 5888064 -136383380 - MER5A DNA MER1_type 0 189 4 229 190 69 0 chr9 5888657 5888715 -136382729 - MIR SINE MIR -98 110 49 424 258 108 24 chr9 5888731 5888898 -136382546 - MER112 DNA MER1_type -9 251 71 424 88 206 15 chr9 5889396 5889464 -136381980 + AluS SINE Alu 4 84 -228 561 287 89 3 chr9 5891039 5891321 -136380123 - L1ME4a LINE L1 -267 5854 5549 803 146 0 8 chr9 5891617 5891747 -136379697 - FLAM_C SINE Alu -8 135 7 2386 80 30 0 chr9 5891788 5892089 -136379355 - AluSx SINE Alu -2 310 1 38 39 0 0 chr9 5892766 5892818 -136378626 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr9 5893101 5893122 -136378322 + AT_rich Low_complexity Low_complexity 1 21 0 281 289 185 33 chr9 5893158 5893521 -136377923 + L1ME4a LINE L1 5581 5998 -123 945 188 16 36 chr9 5893539 5893731 -136377713 - MER20 DNA MER1_type 0 219 32 22 70 0 0 chr9 5893788 5893831 -136377613 + AT_rich Low_complexity Low_complexity 1 43 0 635 284 105 57 chr9 5894293 5894817 -136376627 - L1MC/D LINE L1 -2005 5803 5255 412 304 24 16 chr9 5895012 5895137 -136376307 + L2 LINE L2 3183 3308 -5 182 61 0 30 chr9 5897307 5897340 -136374104 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 271 268 143 62 chr9 5898001 5898210 -136373234 - L3 LINE CR1 -7 1570 1345 572 223 4 128 chr9 5899654 5899919 -136371525 + L2 LINE L2 3082 3313 0 236 321 0 25 chr9 5900115 5900196 -136371248 - MIR SINE MIR -24 238 160 252 238 50 0 chr9 5900197 5900277 -136371167 + HsTC2 DNA Tc2 3 86 -1812 664 253 13 13 chr9 5900295 5900445 -136370999 - MIR SINE MIR -111 151 2 318 269 86 6 chr9 5900548 5900658 -136370786 - Charlie7 DNA MER1_type -4 2608 2477 375 200 0 12 chr9 5900658 5900738 -136370706 - MER116 DNA Mariner -1 79 1 318 269 86 6 chr9 5900738 5900802 -136370642 - Charlie7 DNA MER1_type -135 2477 2420 * 1067 223 136 14 chr9 5900798 5901143 -136370301 - Charlie7 DNA MER1_type -1891 721 335 1173 176 41 16 chr9 5901666 5901910 -136369534 + L1MC3 LINE L1 7526 7775 -10 534 96 0 24 chr9 5902250 5902333 -136369111 - L1PB4 LINE L1 -8 6148 6068 297 263 79 0 chr9 5902923 5902999 -136368445 + L2 LINE L2 3191 3272 0 376 239 123 29 chr9 5903476 5903614 -136367830 + MIR SINE MIR 80 230 -32 379 232 35 84 chr9 5904017 5904159 -136367285 + MIR SINE MIR 72 206 -56 2261 117 0 0 chr9 5904577 5904876 -136366568 + AluSx SINE Alu 1 299 -13 251 327 58 10 chr9 5905002 5905106 -136366338 - MIR SINE MIR -153 109 1 341 279 59 82 chr9 5906892 5906975 -136364469 - MIR SINE MIR -27 235 152 225 0 0 0 chr9 5906975 5907000 -136364444 + (GA)n Simple_repeat Simple_repeat 2 26 0 341 279 59 82 chr9 5907000 5907164 -136364280 - MIR SINE MIR -110 152 2 300 216 0 0 chr9 5907398 5907449 -136363995 + MER81 DNA DNA 3 53 -61 364 279 121 7 chr9 5908437 5908577 -136362867 - MIR SINE MIR -58 204 49 465 326 56 25 chr9 5908622 5908818 -136362626 - L2 LINE L2 0 3272 3071 24 32 0 0 chr9 5910223 5910254 -136361190 + AT_rich Low_complexity Low_complexity 1 31 0 2232 110 3 0 chr9 5910962 5911262 -136360182 - AluSq SINE Alu -12 301 1 23 33 0 0 chr9 5911543 5911573 -136359871 + AT_rich Low_complexity Low_complexity 1 30 0 41817 66 3 4 chr9 5911587 5917739 -136353705 - L1PA5 LINE L1 -2 6152 3 3580 125 8 43 chr9 5917751 5917943 -136353501 - L1MA6 LINE L1 -22 6278 6081 2110 138 50 56 chr9 5917943 5918320 -136353124 - THE1C LTR MaLR 0 375 1 3580 125 8 43 chr9 5918320 5918622 -136352822 - L1MA6 LINE L1 -219 6081 5770 405 0 0 0 chr9 5918622 5918667 -136352777 + (TG)n Simple_repeat Simple_repeat 2 46 0 3580 125 8 43 chr9 5918667 5918682 -136352762 - L1MA6 LINE L1 -530 5770 5756 710 153 89 24 chr9 5918682 5918806 -136352638 - FLAM_A SINE Alu -1 132 1 3580 125 8 43 chr9 5918806 5918919 -136352525 - L1MA6 LINE L1 -544 5756 5676 205 106 21 21 chr9 5918925 5918972 -136352472 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 45 45 0 0 chr9 5919680 5919746 -136351698 + AT_rich Low_complexity Low_complexity 1 66 0 195 238 188 38 chr9 5920252 5920332 -136351112 - L2 LINE L2 -12 3260 3169 874 281 42 4 chr9 5920674 5920912 -136350532 - MIR SINE MIR -13 249 3 1883 249 55 21 chr9 5921073 5921976 -136349468 - L1ME LINE L1 -438 5724 4787 1930 154 0 0 chr9 5922197 5922495 -136348949 + AluJb SINE Alu 1 298 -14 1390 112 0 39 chr9 5922701 5922907 -136348537 - AluSg/x SINE Alu -10 300 103 361 268 48 26 chr9 5923727 5923933 -136347511 - MLT1L LTR MaLR -363 252 5 194 311 98 59 chr9 5923950 5924204 -136347240 + L2 LINE L2 2603 2866 -448 332 176 0 0 chr9 5924218 5924269 -136347175 - MER58A DNA MER1_type -33 191 141 699 77 30 179 chr9 5924288 5924386 -136347058 + Tigger7 DNA MER2_type 2232 2296 -195 861 137 23 8 chr9 5924386 5924517 -136346927 - FLAM_C SINE Alu 0 133 1 699 77 30 179 chr9 5924517 5924586 -136346858 + Tigger7 DNA MER2_type 2296 2374 -117 814 123 0 16 chr9 5924669 5924791 -136346653 + Tigger7 DNA MER2_type 2368 2487 0 675 248 14 0 chr9 5924791 5924932 -136346512 - MER58A DNA MER1_type 0 143 1 690 296 94 14 chr9 5925607 5925830 -136345614 + MIR SINE MIR 15 255 -7 1083 267 49 21 chr9 5925919 5926207 -136345237 - MLT1J1 LTR MaLR -128 318 23 667 321 109 44 chr9 5926596 5927120 -136344324 - L2 LINE L2 0 3313 2728 2368 97 0 0 chr9 5927120 5927429 -136344015 - AluSc SINE Alu 0 309 1 667 321 109 44 chr9 5927429 5927576 -136343868 - L2 LINE L2 -585 2728 2592 841 285 34 4 chr9 5929292 5929527 -136341917 + MIR SINE MIR 8 249 -13 548 235 53 82 chr9 5930391 5930634 -136340810 + L1ME4a LINE L1 5631 5866 -255 466 17 0 34 chr9 5930695 5930754 -136340690 + AluY SINE Alu 242 298 -13 1845 51 0 0 chr9 5930758 5930972 -136340472 + L1PA5 LINE L1 5933 6146 -8 22 0 0 0 chr9 5930972 5930994 -136340450 + AT_rich Low_complexity Low_complexity 1 22 0 815 272 40 36 chr9 5931328 5931578 -136339866 - MIR SINE MIR -4 258 8 260 200 0 20 chr9 5931758 5931808 -136339636 + MIR SINE MIR 101 149 -59 331 273 147 47 chr9 5932018 5932168 -136339276 + L2 LINE L2 3106 3270 -2 2140 130 19 3 chr9 5932422 5932729 -136338715 - AluJb SINE Alu 0 312 1 348 267 147 47 chr9 5932949 5933099 -136338345 - L2 LINE L2 -2 3270 3106 517 291 32 6 chr9 5933394 5933552 -136337892 - MER5B DNA MER1_type -16 162 1 7801 45 7 0 chr9 5934393 5935728 -136335716 - L1PA4 LINE L1 0 6155 4817 2871 165 49 27 chr9 5935912 5935968 -136335476 - L1MB8 LINE L1 0 6178 6125 2241 147 6 32 chr9 5935968 5936314 -136335130 + MER1B DNA MER1_type 1 337 0 2871 165 49 27 chr9 5936314 5936844 -136334600 - L1MB8 LINE L1 -53 6125 5579 211 194 0 0 chr9 5937418 5937454 -136333990 + CT-rich Low_complexity Low_complexity 5 40 0 1025 181 0 0 chr9 5937549 5937715 -136333729 - FRAM SINE Alu -11 165 1 1444 114 14 5 chr9 5937726 5937946 -136333498 - L1MA5 LINE L1 -5 6295 6074 2320 91 0 3 chr9 5938442 5938740 -136332704 - AluSx SINE Alu -15 297 1 286 235 12 35 chr9 5939023 5939108 -136332336 - MIR SINE MIR -7 255 173 310 193 12 12 chr9 5939109 5939192 -136332252 + (CATTA)n Simple_repeat Simple_repeat 2 84 0 229 369 0 0 chr9 5939244 5939328 -136332116 + MIR SINE MIR 61 144 -118 549 176 0 0 chr9 5939549 5939634 -136331810 + AluJb SINE Alu 1 85 -227 2208 110 0 3 chr9 5939634 5939935 -136331509 - LTR46 LTR ERV1 0 460 161 1963 162 48 14 chr9 5939938 5940296 -136331148 - LTR46-int LTR ERV1 -3 6982 6613 2765 88 0 1 chr9 5940412 5940820 -136330624 + LTR46 LTR ERV1 1 460 0 1293 186 0 4 chr9 5940822 5941048 -136330396 + AluJb SINE Alu 83 307 -5 16887 172 22 17 chr9 5941249 5947286 -136324158 + L1PA12 LINE L1 1 6115 -704 2351 82 0 3 chr9 5947286 5947579 -136323865 + AluY SINE Alu 1 292 -19 16887 172 22 17 chr9 5947579 5948233 -136323211 + L1PA12 LINE L1 6115 6764 -55 227 200 0 0 chr9 5948663 5948703 -136322741 - MLT1K LTR MaLR -359 229 190 183 308 223 0 chr9 5949186 5949316 -136322128 + MIR SINE MIR 34 192 -70 999 208 98 4 chr9 5949340 5949585 -136321859 + MLT1C LTR MaLR 9 276 -191 2540 161 9 0 chr9 5949785 5950220 -136321224 + L1P LINE L1 3951 4389 -1757 269 173 19 0 chr9 5951418 5951470 -136319974 + L3 LINE CR1 1518 1570 -7 328 308 38 53 chr9 5951613 5951746 -136319698 + L2 LINE L2 3142 3272 0 253 349 77 12 chr9 5952977 5953146 -136318298 + L2 LINE L2 2872 3051 -221 227 263 18 0 chr9 5953538 5953595 -136317849 - Charlie8 DNA MER1_type -999 1418 1361 283 278 151 56 chr9 5953939 5954065 -136317379 + L2 LINE L2 3134 3271 -1 967 162 5 89 chr9 5954367 5954558 -136316886 + FAM SINE Alu 1 175 0 257 269 26 13 chr9 5954656 5954734 -136316710 - L2 LINE L2 -209 3063 2985 4666 190 99 30 chr9 5955148 5955415 -136316029 - MER52A LTR ERV1 -518 1237 990 2338 97 3 3 chr9 5955415 5955725 -136315719 + AluSg SINE Alu 1 310 0 4666 190 99 30 chr9 5955725 5955815 -136315629 - MER52A LTR ERV1 -765 990 908 2298 91 10 3 chr9 5955815 5956123 -136315321 - AluSq SINE Alu -3 310 1 4666 190 99 30 chr9 5956123 5956838 -136314606 - MER52A LTR ERV1 -847 908 1 353 100 20 0 chr9 5956840 5956890 -136314554 + AluJ/FRAM SINE Alu 225 275 -27 582 314 91 19 chr9 5957028 5957292 -136314152 - MER115 DNA AcHobo -390 303 21 1337 246 87 27 chr9 5957294 5957697 -136313747 - L2 LINE L2 -519 2795 2369 358 345 54 14 chr9 5957866 5958014 -136313430 - MIR SINE MIR -96 166 13 1616 261 183 30 chr9 5958401 5958695 -136312749 + L2 LINE L2 1673 1921 -1393 3291 149 29 23 chr9 5958695 5959250 -136312194 - MER74A LTR ERVL 0 558 1 1616 261 183 30 chr9 5959250 5959698 -136311746 + L2 LINE L2 1921 2529 -785 2571 197 8 126 chr9 5959698 5960571 -136310873 + L1MB7 LINE L1 4481 5250 -896 * 3377 161 7 11 chr9 5960562 5961132 -136310312 + L1MB7 LINE L1 5567 6134 -50 228 187 0 93 chr9 5961139 5961214 -136310230 + L1MA10 LINE L1 6263 6330 -4 27 49 0 0 chr9 5961214 5961255 -136310189 + AT_rich Low_complexity Low_complexity 1 41 0 386 262 91 77 chr9 5961265 5961486 -136309958 + L2 LINE L2 2548 2771 -543 543 264 167 17 chr9 5963832 5964006 -136307438 - MIR SINE MIR -11 251 52 28 29 0 0 chr9 5964557 5964592 -136306852 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 5964812 5964834 -136306610 + AT_rich Low_complexity Low_complexity 1 22 0 2103 119 16 7 chr9 5964839 5965142 -136306302 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr9 5965275 5965297 -136306147 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr9 5965415 5965440 -136306004 + AT_rich Low_complexity Low_complexity 1 25 0 2337 84 0 0 chr9 5965540 5965837 -136305607 + AluSg SINE Alu 1 297 -13 25 31 0 0 chr9 5965961 5965993 -136305451 + AT_rich Low_complexity Low_complexity 1 32 0 252 175 53 18 chr9 5966074 5966131 -136305313 - L1ME3A LINE L1 -95 6075 6017 1597 188 10 10 chr9 5966223 5966511 -136304933 - AluJo SINE Alu -24 288 1 252 219 146 57 chr9 5966597 5966720 -136304724 - L1ME3A LINE L1 -268 5853 5720 2699 196 69 13 chr9 5966943 5967064 -136304380 - L1ME1 LINE L1 -187 5979 5866 180 0 0 0 chr9 5967064 5967084 -136304360 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2699 196 69 13 chr9 5967084 5967594 -136303850 - L1ME1 LINE L1 -300 5866 5458 2186 123 0 3 chr9 5967594 5967903 -136303541 - AluSx SINE Alu -4 308 1 2699 196 69 13 chr9 5967903 5968002 -136303442 - L1ME1 LINE L1 -708 5458 5366 221 58 77 0 chr9 5968010 5968062 -136303382 + (TA)n Simple_repeat Simple_repeat 1 56 0 1836 167 3 13 chr9 5968078 5968378 -136303066 - AluJo SINE Alu -15 297 1 2161 190 40 77 chr9 5968387 5968520 -136302924 - L1ME1 LINE L1 -757 5389 5253 1694 157 25 0 chr9 5968520 5968794 -136302650 - AluSx SINE Alu -23 289 9 2161 190 40 77 chr9 5968794 5969307 -136302137 - L1ME1 LINE L1 -893 5253 4767 671 268 93 0 chr9 5970360 5970554 -136300890 + MIR SINE MIR 49 260 -2 411 224 299 0 chr9 5970603 5970737 -136300707 - MER5A DNA MER1_type -6 183 10 510 277 40 40 chr9 5970788 5970965 -136300479 - MER5B DNA MER1_type -1 177 1 215 308 192 42 chr9 5972284 5972404 -136299040 - L2 LINE L2 -2 3270 3133 581 316 66 20 chr9 5972590 5972834 -136298610 - MIR SINE MIR -6 256 2 233 73 0 24 chr9 5972884 5972925 -136298519 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 985 251 112 27 chr9 5973123 5973497 -136297947 + MER113 DNA MER1_type? 116 521 0 302 304 143 54 chr9 5973497 5973721 -136297723 + MIR SINE MIR 13 256 -6 555 240 85 25 chr9 5973787 5973987 -136297457 + MIR SINE MIR 51 262 0 532 246 41 86 chr9 5975191 5975459 -136295985 - MER112 DNA MER1_type 0 256 1 248 290 0 0 chr9 5975460 5975529 -136295915 - MIR3 SINE MIR -49 159 91 518 308 12 12 chr9 5975940 5976109 -136295335 + MIR SINE MIR 89 257 -5 804 273 144 11 chr9 5976511 5976789 -136294655 + Charlie2 DNA MER1_type 4 318 -2464 2214 210 101 30 chr9 5976801 5977251 -136294193 + Charlie2 DNA MER1_type 1871 2388 -474 3527 39 17 0 chr9 5977251 5977657 -136293787 + L1PA4 LINE L1 5743 6155 0 2214 210 101 30 chr9 5977657 5977897 -136293547 + Charlie2 DNA MER1_type 2388 2610 -252 2521 52 0 10 chr9 5978175 5978485 -136292959 + AluY SINE Alu 1 307 -4 1264 101 48 0 chr9 5978614 5978802 -136292642 - L1MA5A LINE L1 -3 6294 6098 419 265 70 22 chr9 5978806 5979036 -136292408 + Charlie2 DNA MER1_type 2606 2846 -16 12851 165 27 18 chr9 5979625 5983027 -136288417 + L1PB1 LINE L1 2598 6032 -119 2500 69 0 0 chr9 5983029 5983332 -136288112 + AluY SINE Alu 1 303 -8 22 56 0 0 chr9 5983580 5983616 -136287828 + AT_rich Low_complexity Low_complexity 1 36 0 255 308 59 18 chr9 5983706 5983875 -136287569 + L3 LINE CR1 270 445 -1132 1192 266 110 17 chr9 5983906 5984379 -136287065 - LTR33A LTR ERVL -5 518 2 209 285 76 101 chr9 5984402 5984560 -136286884 + L3 LINE CR1 473 626 -951 411 358 55 5 chr9 5984655 5984873 -136286571 + L3 LINE CR1 1044 1272 -305 288 275 290 15 chr9 5984876 5985076 -136286368 - MIR SINE MIR 0 262 8 308 312 7 78 chr9 5985108 5985262 -136286182 + L3 LINE CR1 1326 1468 -109 1157 208 60 18 chr9 5985288 5985624 -136285820 + L1M4 LINE L1 2368 2717 -3429 229 233 50 0 chr9 5986960 5987020 -136284424 - L1ME LINE L1 -536 5585 5523 3360 154 64 43 chr9 5987341 5987426 -136284018 - L1MA7 LINE L1 -1 6290 6208 2327 103 7 3 chr9 5987426 5987736 -136283708 + AluSq SINE Alu 1 311 -2 3360 154 64 43 chr9 5987736 5988370 -136283074 - L1MA7 LINE L1 -83 6208 5556 219 149 0 64 chr9 5988441 5988488 -136282956 + (TG)n Simple_repeat Simple_repeat 2 45 0 439 348 49 18 chr9 5988774 5988998 -136282446 + MIR SINE MIR 32 262 0 1714 236 113 11 chr9 5989403 5989874 -136281570 - LTR33 LTR ERVL -2 519 1 2122 199 44 58 chr9 5990182 5990471 -136280973 - MLT1D LTR MaLR -7 498 217 2235 109 3 0 chr9 5990471 5990764 -136280680 - AluSx SINE Alu -18 294 1 2122 199 44 58 chr9 5990764 5990976 -136280468 - MLT1D LTR MaLR -288 217 4 927 313 67 46 chr9 5991729 5992253 -136279191 - ERVL LTR ERVL -420 5344 4810 892 178 5 49 chr9 5992715 5992900 -136278544 + AluJo SINE Alu 123 299 -13 192 182 0 45 chr9 5993968 5994012 -136277432 + MIR SINE MIR 213 254 -8 591 286 45 15 chr9 5994560 5994759 -136276685 + MIR SINE MIR 13 217 -45 2218 108 0 7 chr9 5994904 5995200 -136276244 + AluSq SINE Alu 1 294 -19 650 261 153 47 chr9 5995272 5995698 -136275746 - MLT1J LTR MaLR -10 501 31 434 323 12 24 chr9 5996215 5996382 -136275062 + MIR3 SINE MIR 37 201 -7 247 298 0 0 chr9 5996949 5997006 -136274438 + polypurine Low_complexity Low_complexity 1 57 0 216 67 0 0 chr9 5997023 5997053 -136274391 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 879 264 65 0 chr9 5997070 5997286 -136274158 + MIR SINE MIR 13 242 -20 257 340 11 0 chr9 5998553 5998647 -136272797 + GA-rich Low_complexity Low_complexity 2 96 0 264 357 37 1 chr9 5999221 5999349 -136272095 + MIR SINE MIR 17 148 -60 357 364 137 25 chr9 5999387 5999825 -136271619 + L2 LINE L2 2564 3055 -217 365 371 0 0 chr9 6000744 6000860 -136270584 + L2 LINE L2 3137 3252 -20 714 173 173 43 chr9 6000904 6001089 -136270355 - MER3 DNA MER1_type 0 209 1 356 270 162 14 chr9 6001091 6001268 -136270176 - MIR SINE MIR -48 214 16 185 143 57 0 chr9 6001467 6001502 -136269942 - MER5C DNA MER1_type 0 324 288 * 278 224 90 0 chr9 6001500 6001567 -136269877 - MER5C DNA MER1_type -249 75 3 3229 102 7 7 chr9 6001978 6002421 -136269023 + L1PB3 LINE L1 5712 6154 0 1989 151 16 6 chr9 6003507 6003824 -136267620 - MLT2C1 LTR ERVL -77 320 1 243 270 17 70 chr9 6004542 6004657 -136266787 + L2 LINE L2 2893 3001 -271 646 246 33 74 chr9 6004699 6004943 -136266501 - MIR SINE MIR -26 236 3 1872 150 10 14 chr9 6004962 6005255 -136266189 - AluJo SINE Alu -20 292 1 23 0 0 0 chr9 6005508 6005531 -136265913 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 6005564 6005601 -136265843 + AT_rich Low_complexity Low_complexity 1 37 0 26 64 0 0 chr9 6005682 6005729 -136265715 + AT_rich Low_complexity Low_complexity 1 47 0 1573 248 28 18 chr9 6006107 6006494 -136264950 + MLT1I LTR MaLR 11 401 -8 313 316 70 51 chr9 6006534 6006847 -136264597 + L1ME4a LINE L1 5803 6121 0 362 299 0 0 chr9 6007051 6007138 -136264306 - MIR SINE MIR -95 113 27 279 298 0 12 chr9 6007332 6007416 -136264028 - MIR3 SINE MIR -35 173 91 228 206 0 130 chr9 6007475 6007567 -136263877 - L2 LINE L2 0 3272 3193 2374 130 12 35 chr9 6008001 6008346 -136263098 + MER1B DNA MER1_type 1 337 0 1375 276 106 15 chr9 6008939 6009413 -136262031 - LTR33 LTR ERVL -4 517 1 212 250 0 18 chr9 6010611 6010667 -136260777 + MIR SINE MIR 102 156 -106 585 258 57 5 chr9 6011551 6011750 -136259694 - MIR SINE MIR -2 260 53 5277 55 40 5 chr9 6011865 6012518 -136258926 + L1PA8 LINE L1 5486 6161 -11 228 365 94 10 chr9 6012568 6012664 -136258780 + MIR SINE MIR 28 131 -131 2209 132 0 0 chr9 6012678 6012982 -136258462 + AluSx SINE Alu 1 304 -8 231 61 0 0 chr9 6012998 6013031 -136258413 + (TA)n Simple_repeat Simple_repeat 1 33 0 36 0 0 0 chr9 6013057 6013093 -136258351 + AT_rich Low_complexity Low_complexity 1 36 0 2202 121 0 19 chr9 6013095 6013409 -136258035 + AluSg SINE Alu 1 308 -2 2341 86 3 10 chr9 6013609 6013911 -136257533 - AluSp SINE Alu -13 300 1 2358 87 3 0 chr9 6014212 6014511 -136256933 + AluSp SINE Alu 1 300 -13 398 238 0 10 chr9 6014562 6014663 -136256781 - L1ME LINE L1 -298 5823 5724 1626 230 49 45 chr9 6014685 6015057 -136256387 + LTR33 LTR ERVL 1 377 -144 279 114 0 0 chr9 6015057 6015101 -136256343 + (CA)n Simple_repeat Simple_repeat 2 45 0 1626 230 49 45 chr9 6015101 6015220 -136256224 + LTR33 LTR ERVL 377 494 -27 373 290 20 0 chr9 6015263 6015363 -136256081 - L1ME LINE L1 -461 5660 5559 263 272 29 48 chr9 6015616 6015719 -136255725 + MIR SINE MIR 104 204 -58 1007 156 0 0 chr9 6015968 6016150 -136255294 - AluJb SINE Alu 0 323 142 2193 119 3 0 chr9 6016228 6016530 -136254914 - AluSp SINE Alu -10 303 1 642 235 138 113 chr9 6016990 6017424 -136254020 - MLT1H LTR MaLR 0 549 105 422 324 113 35 chr9 6017836 6018207 -136253237 - ERVL LTR ERVL -5067 697 298 415 249 79 42 chr9 6018653 6018818 -136252626 - LTR50 LTR ERVL -617 178 8 2341 71 0 0 chr9 6019047 6019378 -136252066 - AluY SINE Alu 0 333 3 682 301 160 33 chr9 6019417 6019843 -136251601 - MLT1K LTR MaLR -19 569 90 589 204 84 36 chr9 6020202 6020293 -136251151 - MIR SINE MIR -27 235 150 2560 107 120 5 chr9 6020293 6020677 -136250767 - MSTA LTR MaLR 0 428 1 589 204 84 36 chr9 6020677 6020752 -136250692 - MIR SINE MIR -112 150 61 266 346 58 6 chr9 6020824 6020980 -136250464 + L2 LINE L2 3146 3309 -4 4514 70 23 0 chr9 6021443 6022004 -136249440 + L1PA11 LINE L1 5596 6169 -5 1872 103 20 0 chr9 6023514 6023767 -136247677 + AluSx SINE Alu 34 291 -21 363 262 8 40 chr9 6023783 6023909 -136247535 - MIR SINE MIR -50 212 91 1996 164 0 0 chr9 6023946 6024245 -136247199 + AluJb SINE Alu 1 299 -13 225 283 61 30 chr9 6024280 6024379 -136247065 + L3 LINE CR1 398 499 -1078 828 297 183 73 chr9 6024437 6024555 -136246889 + L3 LINE CR1 647 751 -826 1980 162 0 0 chr9 6024555 6024857 -136246587 + AluJb SINE Alu 8 309 -3 828 297 183 73 chr9 6024857 6025084 -136246360 + L3 LINE CR1 751 952 -625 1931 155 3 3 chr9 6025084 6025381 -136246063 + AluJb SINE Alu 1 297 -15 828 297 183 73 chr9 6025381 6025870 -136245574 + L3 LINE CR1 952 1574 -3 300 261 136 11 chr9 6025877 6025965 -136245479 + MIR3 SINE MIR 99 197 -11 451 270 117 7 chr9 6027506 6027643 -136243801 + MIR SINE MIR 32 183 -79 2079 138 3 0 chr9 6027688 6027986 -136243458 - AluSx SINE Alu -13 299 1 21 71 0 0 chr9 6028367 6028409 -136243035 + AT_rich Low_complexity Low_complexity 1 42 0 213 59 0 29 chr9 6028445 6028479 -136242965 - L2 LINE L2 0 3272 3240 372 318 68 27 chr9 6029211 6029431 -136242013 - MIR SINE MIR -6 256 28 883 241 117 14 chr9 6030047 6030338 -136241106 - MER5C DNA MER1_type -2 322 2 2426 91 3 0 chr9 6030350 6030657 -136240787 - AluSx SINE Alu -4 308 1 192 152 0 0 chr9 6030760 6030793 -136240651 + T-rich Low_complexity Low_complexity 1 33 0 691 79 0 11 chr9 6031080 6031169 -136240275 - AluJb SINE Alu -194 118 31 220 196 0 39 chr9 6031934 6031985 -136239459 + L2 LINE L2 3262 3310 -3 382 225 200 8 chr9 6032515 6032635 -136238809 - MER5A DNA MER1_type 0 189 47 1016 101 51 6 chr9 6032635 6032793 -136238651 + MSTB LTR MaLR 1 165 -261 1750 193 90 69 chr9 6032801 6033310 -136238134 + MER21B LTR ERV1 299 818 -45 968 145 0 0 chr9 6033402 6033533 -136237911 - FLAM_C SINE Alu -2 131 1 1680 151 33 4 chr9 6034346 6034617 -136236827 + AluJb SINE Alu 1 279 -33 1015 198 68 34 chr9 6035640 6035877 -136235567 - MIR SINE MIR 0 262 18 343 298 89 0 chr9 6036494 6036618 -136234826 - MIR3 SINE MIR -4 204 70 291 274 27 0 chr9 6037461 6037534 -136233910 + L2 LINE L2 3184 3258 -14 231 163 20 20 chr9 6037535 6037584 -136233860 + GA-rich Low_complexity Low_complexity 2 50 0 597 262 115 0 chr9 6038198 6038381 -136233063 - MIR SINE MIR -52 210 7 266 236 167 0 chr9 6038550 6038622 -136232822 + MIR SINE MIR 63 146 -116 589 248 35 0 chr9 6038623 6038768 -136232676 + L1MC4a LINE L1 5674 5823 -1985 2352 137 2 68 chr9 6038768 6039192 -136232252 + MER61E LTR ERV1 54 449 -120 479 221 50 61 chr9 6039201 6039382 -136232062 + L1MC4a LINE L1 5812 5990 -1818 1287 265 38 19 chr9 6039451 6039902 -136231542 - LTR33 LTR ERVL -1 520 1 1755 118 49 26 chr9 6039973 6040279 -136231165 + AluSq SINE Alu 1 313 0 2054 97 18 4 chr9 6040618 6040933 -136230511 - AluSx SINE Alu 0 319 1 359 277 161 19 chr9 6041140 6041295 -136230149 - MER5B DNA MER1_type 0 178 2 356 299 90 57 chr9 6041343 6041587 -136229857 + L2 LINE L2 2839 3090 -182 934 284 56 40 chr9 6041706 6042210 -136229234 + L1ME4a LINE L1 5506 6017 -104 506 311 0 8 chr9 6042313 6042435 -136229009 - MER91A DNA MER1_type 0 196 76 409 303 55 0 chr9 6042463 6042608 -136228836 - L1ME3A LINE L1 -230 5940 5788 2201 283 82 39 chr9 6043243 6044962 -136226482 + L1MEc LINE L1 2141 3785 -2430 1850 167 3 10 chr9 6044962 6045290 -136226154 + AluJb SINE Alu 1 312 0 2201 283 82 39 chr9 6045290 6045301 -136226143 + L1MEc LINE L1 3785 3794 -2421 2151 122 0 0 chr9 6045301 6045614 -136225830 + AluSq SINE Alu 1 313 0 2201 283 82 39 chr9 6045614 6045689 -136225755 + L1MEc LINE L1 3794 3982 -2233 1221 266 81 75 chr9 6045709 6045932 -136225512 + L1MEc LINE L1 4136 4356 -1859 2162 107 7 3 chr9 6045932 6046223 -136225221 + AluSp SINE Alu 1 292 -21 1221 266 81 75 chr9 6046223 6046349 -136225095 + L1MEc LINE L1 4356 4480 -1735 2692 106 19 6 chr9 6046349 6046708 -136224736 + THE1B LTR MaLR 1 364 0 1221 266 81 75 chr9 6046708 6047525 -136223919 + L1MEc LINE L1 4480 5311 -904 558 270 92 25 chr9 6047529 6047725 -136223719 + MER63A DNA MER1_type 2 210 0 784 250 72 51 chr9 6047725 6047971 -136223473 + L1MEc LINE L1 5305 5544 -687 835 191 0 22 chr9 6047971 6048107 -136223337 + FLAM_A SINE Alu 1 133 0 784 250 72 51 chr9 6048107 6048364 -136223080 + L1MEc LINE L1 5544 5817 -414 1119 240 193 14 chr9 6048365 6048782 -136222662 - MLT2F LTR ERVL -3 660 93 258 121 172 35 chr9 6048788 6048846 -136222598 - MIR3 SINE MIR -46 162 97 30 69 0 0 chr9 6049673 6049731 -136221713 + AT_rich Low_complexity Low_complexity 1 58 0 32 0 0 0 chr9 6049891 6049923 -136221521 + AT_rich Low_complexity Low_complexity 1 32 0 381 213 12 0 chr9 6050340 6050420 -136221024 - LTR16A LTR ERVL -5 445 365 1989 89 4 0 chr9 6050639 6050896 -136220548 - L1PB1 LINE L1 -1 6150 5893 264 295 11 32 chr9 6051865 6051960 -136219484 - MIR SINE MIR -2 260 168 205 298 0 0 chr9 6051992 6052039 -136219405 - MIR SINE MIR -196 66 20 1537 249 66 10 chr9 6052155 6052549 -136218895 + LTR16C LTR ERVL 76 491 0 2322 102 0 0 chr9 6053050 6053343 -136218101 - AluSg SINE Alu -17 293 1 1787 120 69 4 chr9 6053528 6053804 -136217640 + AluSx SINE Alu 1 294 -18 2050 116 31 7 chr9 6054254 6054546 -136216898 - AluSx SINE Alu -13 299 1 203 86 0 29 chr9 6055152 6055187 -136216257 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 787 219 125 5 chr9 6055620 6055812 -136215632 + MIR SINE MIR 48 262 0 407 304 28 66 chr9 6056317 6056498 -136214946 - MER5A DNA MER1_type -9 180 7 22 0 0 0 chr9 6056590 6056612 -136214832 + AT_rich Low_complexity Low_complexity 1 22 0 4399 117 26 48 chr9 6057077 6057811 -136213633 + L1MB2 LINE L1 5343 6060 -111 26 50 0 0 chr9 6058404 6058444 -136213000 + AT_rich Low_complexity Low_complexity 1 40 0 6131 133 60 34 chr9 6058493 6059103 -136212341 - Tigger3b DNA MER2_type -1797 1231 639 2363 90 0 0 chr9 6059103 6059404 -136212040 - AluSg SINE Alu -9 301 1 2055 123 3 29 chr9 6059406 6059716 -136211728 - AluSx SINE Alu -10 302 1 6131 133 60 34 chr9 6059716 6059858 -136211586 - Tigger3b DNA MER2_type -2389 639 502 1725 158 10 17 chr9 6059858 6060150 -136211294 - AluJo SINE Alu -14 298 9 6131 133 60 34 chr9 6060150 6060524 -136210920 - Tigger3b DNA MER2_type -2526 502 71 881 145 7 7 chr9 6060630 6060775 -136210669 - Tigger1 DNA MER2_type -185 2233 2089 2350 85 0 0 chr9 6060781 6061076 -136210368 - AluSc SINE Alu -14 295 1 1415 133 4 112 chr9 6061076 6061354 -136210090 - Tigger1 DNA MER2_type -864 1554 1307 9176 142 10 23 chr9 6061391 6062186 -136209258 - Tigger1 DNA MER2_type -921 1497 730 1660 174 27 20 chr9 6062186 6062480 -136208964 - AluJo SINE Alu -14 298 3 9176 142 10 23 chr9 6062480 6063147 -136208297 - Tigger1 DNA MER2_type -1688 730 55 1630 176 35 3 chr9 6063280 6063569 -136207875 - AluJb SINE Alu -14 298 1 2215 126 7 0 chr9 6063730 6064040 -136207404 + AluSx SINE Alu 1 312 0 380 253 55 0 chr9 6064191 6064282 -136207162 - Tigger1 DNA MER2_type -2254 164 69 880 104 0 0 chr9 6064284 6064399 -136207045 - AluSg/x SINE Alu -13 297 183 2367 95 3 0 chr9 6064523 6064828 -136206616 + AluSp SINE Alu 1 306 -7 2132 101 10 3 chr9 6065676 6065972 -136205472 - AluSx SINE Alu -14 298 1 23 68 0 0 chr9 6066918 6066962 -136204482 + GC_rich Low_complexity Low_complexity 1 44 0 227 189 94 0 chr9 6067138 6067191 -136204253 - L1ME LINE L1 -521 5600 5543 345 185 46 83 chr9 6067206 6067314 -136204130 - L1ME LINE L1 -688 5468 5363 359 264 99 40 chr9 6068145 6068309 -136203135 + L1ME4a LINE L1 5770 5923 -198 2330 63 0 7 chr9 6068309 6068626 -136202818 + AluY SINE Alu 1 315 0 2261 91 3 19 chr9 6068635 6068942 -136202502 + AluSx SINE Alu 1 302 -10 194 62 31 0 chr9 6068949 6068981 -136202463 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 359 264 99 40 chr9 6068981 6069119 -136202325 + L1ME4a LINE L1 5935 6110 -11 342 247 0 0 chr9 6069911 6069992 -136201452 + MIR SINE MIR 74 154 -108 1716 172 39 4 chr9 6070008 6070287 -136201157 + AluJb SINE Alu 1 289 -23 698 297 25 8 chr9 6070704 6070848 -136200596 + MIR SINE MIR 2 153 -109 234 0 0 0 chr9 6070848 6070874 -136200570 + (ATG)n Simple_repeat Simple_repeat 2 27 0 698 297 25 8 chr9 6070874 6070965 -136200479 + MIR SINE MIR 153 241 -21 233 297 45 45 chr9 6071078 6071189 -136200255 - MIR3 SINE MIR -92 116 6 629 252 122 32 chr9 6071783 6071894 -136199550 - L1ME4a LINE L1 -121 6000 5900 1588 197 13 7 chr9 6071894 6072203 -136199241 - AluJo SINE Alu -1 311 1 629 252 122 32 chr9 6072203 6072436 -136199008 - L1ME4a LINE L1 -221 5900 5625 585 280 100 47 chr9 6073618 6073883 -136197561 - L1ME4a LINE L1 -224 5897 5607 1753 158 47 10 chr9 6073883 6074181 -136197263 - AluJo SINE Alu -3 309 1 585 280 100 47 chr9 6074181 6074276 -136197168 - L1ME4a LINE L1 -514 5607 5518 1323 155 76 55 chr9 6074323 6074614 -136196830 - AluSx SINE Alu -13 299 3 270 239 46 15 chr9 6074812 6074942 -136196502 - L1ME LINE L1 -894 5252 5119 25 0 0 0 chr9 6074994 6075019 -136196425 + AT_rich Low_complexity Low_complexity 1 25 0 774 195 16 0 chr9 6075156 6075284 -136196160 + FLAM_A SINE Alu 1 130 -3 883 100 21 14 chr9 6076799 6076939 -136194505 + AluSg/x SINE Alu 168 308 -2 1750 211 88 25 chr9 6076978 6077509 -136193935 + L1MC2 LINE L1 4252 4816 -1330 * 2684 178 151 16 chr9 6077497 6078186 -136193258 + L1MC2 LINE L1 5569 6336 -8 1462 151 79 50 chr9 6078189 6078468 -136192976 - AluJo SINE Alu -25 287 1 2240 102 3 0 chr9 6078503 6078797 -136192647 + AluSg SINE Alu 1 295 -15 183 42 0 0 chr9 6078800 6078824 -136192620 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 1960 195 165 7 chr9 6079305 6079741 -136191703 - MLT1D LTR MaLR 0 505 1 434 276 41 21 chr9 6079741 6079877 -136191567 + MIR SINE MIR 38 179 -83 2420 79 0 0 chr9 6079900 6080205 -136191239 - AluY SINE Alu 0 311 7 448 246 0 101 chr9 6080683 6080821 -136190623 - MIR3 SINE MIR -2 206 83 2165 121 3 3 chr9 6080852 6081150 -136190294 + AluSx SINE Alu 1 298 -14 1561 101 0 0 chr9 6081152 6081350 -136190094 + AluSq SINE Alu 1 198 -115 381 127 0 16 chr9 6081351 6081414 -136190030 + AluSq SINE Alu 239 300 -1 377 193 48 0 chr9 6081415 6081498 -136189946 + L1MCa LINE L1 1578 1664 -4762 * 5857 167 49 66 chr9 6081495 6082824 -136188620 + L1MCa LINE L1 17 1322 -5104 1157 150 9 44 chr9 6082824 6083050 -136188394 + AluSx SINE Alu 1 218 -94 1815 151 21 3 chr9 6084470 6084755 -136186689 + AluSx SINE Alu 1 290 -22 542 220 83 64 chr9 6085185 6085403 -136186041 + MER34 LTR ERV1 295 516 -26 662 268 56 6 chr9 6085418 6085597 -136185847 + MER5A DNA MER1_type 1 188 -1 186 103 0 0 chr9 6086569 6086598 -136184846 + (CCG)n Simple_repeat Simple_repeat 3 31 0 205 244 47 58 chr9 6086999 6087085 -136184359 - MIR SINE MIR -54 208 124 298 324 29 15 chr9 6087085 6087221 -136184223 - MIR SINE MIR 0 262 125 871 315 91 37 chr9 6087529 6088013 -136183431 + L2 LINE L2 2758 3271 -1 307 247 0 108 chr9 6088078 6088171 -136183273 + L2 LINE L2 3155 3237 -35 426 85 0 0 chr9 6088182 6088241 -136183203 + (TG)n Simple_repeat Simple_repeat 2 60 0 192 345 76 17 chr9 6088314 6088433 -136183011 + MIR SINE MIR 59 184 -78 242 56 28 0 chr9 6088433 6088469 -136182975 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 * 432 0 0 0 chr9 6088468 6088516 -136182928 + (TG)n Simple_repeat Simple_repeat 1 48 0 755 267 88 44 chr9 6088720 6089016 -136182428 - L2 LINE L2 -9 3304 2996 291 355 41 8 chr9 6089129 6089250 -136182194 - L2 LINE L2 -10 3262 3138 197 33 33 0 chr9 6090007 6090037 -136181407 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 270 307 135 26 chr9 6090134 6090326 -136181118 - MIR SINE MIR -29 233 21 282 287 9 43 chr9 6090539 6090654 -136180790 - MIR SINE MIR -72 190 80 313 278 70 17 chr9 6090745 6090860 -136180584 + MER117 DNA MER1_type 75 195 -2 243 171 0 0 chr9 6090980 6091021 -136180423 - L2 LINE L2 -19 3253 3213 1566 172 62 28 chr9 6091209 6091499 -136179945 + AluJo SINE Alu 1 300 -12 202 323 81 0 chr9 6091570 6091632 -136179812 + L2 LINE L2 3157 3223 -49 924 157 187 57 chr9 6091868 6092098 -136179346 - AluJo SINE Alu -13 299 40 1051 216 65 8 chr9 6092101 6092346 -136179098 + MSTD LTR MaLR 138 396 0 450 0 0 0 chr9 6092426 6092476 -136178968 + (TG)n Simple_repeat Simple_repeat 2 51 0 216 0 0 0 chr9 6092973 6092997 -136178447 + (T)n Simple_repeat Simple_repeat 1 24 0 1870 148 0 33 chr9 6093257 6093274 -136178170 - AluJo SINE Alu -19 293 277 186 71 0 0 chr9 6093274 6093302 -136178142 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1870 148 0 33 chr9 6093302 6093587 -136177857 - AluJo SINE Alu -35 277 1 1675 171 7 52 chr9 6093593 6093902 -136177542 - AluJo SINE Alu -17 295 1 23 0 0 0 chr9 6094780 6094803 -136176641 + AT_rich Low_complexity Low_complexity 1 23 0 196 360 63 36 chr9 6095168 6095279 -136176165 - L2 LINE L2 -2 3270 3157 1663 159 0 34 chr9 6095320 6095616 -136175828 - AluJo SINE Alu 0 312 27 21 36 0 0 chr9 6095655 6095683 -136175761 + AT_rich Low_complexity Low_complexity 1 28 0 2342 103 3 3 chr9 6096236 6096547 -136174897 - AluSx SINE Alu -1 311 1 1427 194 7 4 chr9 6096547 6096809 -136174635 - L1MB5 LINE L1 -111 6063 5798 22 0 0 0 chr9 6096818 6096840 -136174604 + AT_rich Low_complexity Low_complexity 1 22 0 236 314 29 0 chr9 6097322 6097392 -136174052 - MIR SINE MIR -111 151 80 188 293 172 0 chr9 6097792 6097850 -136173594 - L2 LINE L2 -41 3231 3164 1218 64 146 0 chr9 6097870 6098041 -136173403 + MER30 DNA MER1_type 1 196 -34 22 0 0 0 chr9 6098250 6098272 -136173172 + AT_rich Low_complexity Low_complexity 1 22 0 230 318 199 0 chr9 6098336 6098487 -136172957 - MIR3 SINE MIR -12 196 16 495 205 139 0 chr9 6098529 6098680 -136172764 + MIR SINE MIR 89 260 -2 1528 134 119 32 chr9 6098932 6099209 -136172235 - AluSx SINE Alu -11 301 1 2656 173 41 15 chr9 6099363 6099905 -136171539 - MER34B LTR ERV1 0 565 10 668 177 44 0 chr9 6100036 6100149 -136171295 - FLAM_C SINE Alu -15 118 1 231 114 0 0 chr9 6100158 6100193 -136171251 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 1325 90 22 0 chr9 6100193 6100371 -136171073 - AluY SINE Alu -30 281 100 512 99 0 0 chr9 6100373 6100454 -136170990 - AluY SINE Alu -49 262 182 989 102 29 0 chr9 6100454 6100591 -136170853 - AluYa8 SINE Alu -169 141 1 1191 106 116 10 chr9 6100707 6100914 -136170530 - MER30 DNA MER1_type -1 229 1 188 267 280 0 chr9 6101685 6101760 -136169684 - MIR SINE MIR -17 245 150 665 208 136 61 chr9 6101925 6102219 -136169225 - L1MC5 LINE L1 -25 7936 7621 407 265 43 8 chr9 6102681 6102798 -136168646 - L2 LINE L2 -5 3308 3188 1695 137 69 7 chr9 6103617 6103923 -136167521 + MER65A LTR ERV1 1 325 -120 3177 32 0 0 chr9 6103923 6104387 -136167057 + L1PA5 LINE L1 5576 6153 -1 771 114 38 15 chr9 6104394 6104526 -136166918 + MER65A LTR ERV1 309 443 -2 1775 166 6 25 chr9 6104670 6104984 -136166460 - AluJo SINE Alu 0 312 5 227 151 94 19 chr9 6105066 6105119 -136166325 + LTR67 LTR ERVL 501 557 0 211 211 118 145 chr9 6105148 6105300 -136166144 - MIR SINE MIR -80 182 35 578 167 72 100 chr9 6106558 6106598 -136164846 - MIR SINE MIR -34 228 188 2202 89 24 7 chr9 6106598 6106889 -136164555 - AluSp SINE Alu -17 296 1 578 167 72 100 chr9 6106889 6107028 -136164416 - MIR SINE MIR -74 188 54 501 252 107 39 chr9 6107621 6107827 -136163617 - MIR SINE MIR -24 238 19 1958 134 0 0 chr9 6108193 6108468 -136162976 + AluSx SINE Alu 1 275 -37 368 304 51 22 chr9 6108998 6109136 -136162308 + L2 LINE L2 2921 3062 -251 194 94 0 62 chr9 6109306 6109338 -136162106 - L3 LINE CR1 -25 1552 1523 8901 108 14 9 chr9 6109513 6110721 -136160723 + HSMAR1 DNA Mariner 1 1218 -69 2330 86 0 3 chr9 6110721 6111013 -136160431 + AluSc SINE Alu 1 291 -18 8901 108 14 9 chr9 6111013 6111084 -136160360 + HSMAR1 DNA Mariner 1218 1287 0 213 150 17 33 chr9 6112276 6112336 -136159108 + (TA)n Simple_repeat Simple_repeat 2 60 0 560 176 37 143 chr9 6113391 6113664 -136157780 - MER112 DNA MER1_type -6 254 11 1991 103 18 11 chr9 6113691 6114011 -136157433 + AluSp SINE Alu 1 322 0 181 160 20 20 chr9 6114038 6114088 -136157356 + GA-rich Low_complexity Low_complexity 2 51 0 378 0 0 0 chr9 6114934 6114976 -136156468 + (TG)n Simple_repeat Simple_repeat 2 43 0 1850 132 69 36 chr9 6114977 6115310 -136156134 - MER2 DNA MER2_type 0 344 1 282 317 10 30 chr9 6115363 6115464 -136155980 - MER5A DNA MER1_type 0 189 91 803 191 56 28 chr9 6115475 6115653 -136155791 + MIR SINE MIR 9 191 -71 234 0 0 0 chr9 6116614 6116640 -136154804 + (TTG)n Simple_repeat Simple_repeat 2 27 0 686 136 0 0 chr9 6116642 6116745 -136154699 - AluSc SINE Alu -18 291 189 22 70 0 0 chr9 6117140 6117183 -136154261 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr9 6117203 6117225 -136154219 + AT_rich Low_complexity Low_complexity 1 22 0 193 230 58 69 chr9 6117802 6117889 -136153555 + L3 LINE CR1 1491 1576 -1 21 57 0 0 chr9 6118423 6118458 -136152986 + AT_rich Low_complexity Low_complexity 1 35 0 493 236 203 0 chr9 6118694 6118817 -136152627 + MER5A DNA MER1_type 41 188 -1 335 130 159 0 chr9 6119813 6119882 -136151562 - MER116 DNA Mariner 0 80 1 22 0 0 0 chr9 6120890 6120912 -136150532 + AT_rich Low_complexity Low_complexity 1 22 0 1898 149 3 3 chr9 6122835 6123136 -136148308 + AluJo SINE Alu 1 301 -11 300 65 81 0 chr9 6123550 6123612 -136147832 + (TTATG)n Simple_repeat Simple_repeat 4 70 0 32 57 0 0 chr9 6123969 6124022 -136147422 + AT_rich Low_complexity Low_complexity 1 53 0 265 128 0 0 chr9 6124226 6124273 -136147171 - L1MC2 LINE L1 -9 6335 6289 22 35 0 0 chr9 6125091 6125120 -136146324 + AT_rich Low_complexity Low_complexity 1 29 0 2133 71 7 68 chr9 6125519 6125828 -136145616 + AluSg SINE Alu 1 290 -20 631 222 108 75 chr9 6126081 6126293 -136145151 + MER20 DNA MER1_type 1 219 0 23 0 0 0 chr9 6126991 6127014 -136144430 + AT_rich Low_complexity Low_complexity 1 23 0 211 369 63 36 chr9 6127379 6127490 -136143954 - L2 LINE L2 -2 3270 3157 26 0 0 27 chr9 6127523 6127545 -136143899 + AT_rich Low_complexity Low_complexity 1 23 -13 1653 160 0 28 chr9 6127545 6127827 -136143617 - AluJo SINE Alu -12 300 27 26 0 0 27 chr9 6127827 6127841 -136143603 + AT_rich Low_complexity Low_complexity 23 36 0 21 36 0 0 chr9 6127866 6127894 -136143550 + AT_rich Low_complexity Low_complexity 1 28 0 2199 90 7 3 chr9 6128447 6128737 -136142707 - AluSx SINE Alu -1 311 21 2096 122 3 7 chr9 6128768 6129064 -136142380 - AluSg SINE Alu -15 295 1 1717 187 3 0 chr9 6129644 6129938 -136141506 - AluJb SINE Alu -17 295 1 266 132 0 0 chr9 6131234 6131272 -136140172 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 2013 147 0 22 chr9 6131346 6131658 -136139786 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr9 6132853 6132874 -136138570 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr9 6133074 6133117 -136138327 + AT_rich Low_complexity Low_complexity 1 43 0 1725 167 0 13 chr9 6133313 6133618 -136137826 + MER2 DNA MER2_type 1 301 -44 225 0 0 0 chr9 6135617 6135642 -136135802 + (TA)n Simple_repeat Simple_repeat 1 25 0 245 133 67 0 chr9 6135839 6135884 -136135560 + L1MB8 LINE L1 6131 6178 0 416 314 92 59 chr9 6136077 6136316 -136135128 + MIR SINE MIR 14 260 -2 21 36 0 0 chr9 6136599 6136627 -136134817 + AT_rich Low_complexity Low_complexity 1 28 0 4739 252 99 23 chr9 6137061 6138889 -136132555 - L2 LINE L2 -2 3311 1326 246 274 44 71 chr9 6138889 6139002 -136132442 - L3b LINE CR1 -84 1499 1390 263 182 61 15 chr9 6139102 6139168 -136132276 - MIR SINE MIR -97 165 97 2187 78 0 0 chr9 6139215 6139485 -136131959 + AluY SINE Alu 35 304 -7 1274 153 5 5 chr9 6139490 6139692 -136131752 + AluJb SINE Alu 87 288 -24 2138 107 0 0 chr9 6139796 6140068 -136131376 + AluSg SINE Alu 1 272 -38 2289 115 0 0 chr9 6140623 6140935 -136130509 - AluSx SINE Alu 0 312 1 1142 171 33 19 chr9 6141513 6141723 -136129721 + AluJo SINE Alu 84 296 -16 369 0 0 0 chr9 6146427 6146468 -136124976 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr9 6146750 6146779 -136124665 + AT_rich Low_complexity Low_complexity 1 29 0 677 149 74 0 chr9 6147178 6147299 -136124145 - AluSg/x SINE Alu -12 300 171 257 119 0 85 chr9 6147299 6147358 -136124086 - MADE1 DNA Mariner 0 80 27 1065 127 42 0 chr9 6147408 6147574 -136123870 - AluJb SINE Alu -135 177 5 2050 101 3 62 chr9 6148152 6148460 -136122984 - AluSx SINE Alu -22 290 1 181 268 18 54 chr9 6148481 6148537 -136122907 + L2 LINE L2 2772 2825 -489 181 355 151 17 chr9 6148538 6148710 -136122734 + L2 LINE L2 2776 2970 -344 23 68 0 0 chr9 6149413 6149457 -136121987 + AT_rich Low_complexity Low_complexity 1 44 0 318 206 0 0 chr9 6149468 6149536 -136121908 + (TA)n Simple_repeat Simple_repeat 1 68 0 204 301 24 36 chr9 6150303 6150386 -136121058 - L2 LINE L2 -203 3069 2988 394 253 101 0 chr9 6150589 6150688 -136120756 + MIR SINE MIR 136 244 -18 2697 55 0 0 chr9 6151289 6151600 -136119844 + AluY SINE Alu 1 311 0 5769 153 32 38 chr9 6153614 6154177 -136117267 + L1 LINE L1 4115 4680 -1466 2271 108 10 0 chr9 6154177 6154484 -136116960 + AluSx SINE Alu 1 310 -2 5769 153 32 38 chr9 6154484 6155093 -136116351 + L1 LINE L1 4680 5280 -866 225 211 19 0 chr9 6155109 6155161 -136116283 - MLT1J LTR MaLR -149 362 310 1132 242 132 31 chr9 6155761 6156178 -136115266 - MER113 DNA MER1_type? -42 479 21 2421 76 3 0 chr9 6156454 6156745 -136114699 + AluSp SINE Alu 1 292 -21 951 211 32 0 chr9 6157800 6157985 -136113459 - MIR SINE MIR -71 191 1 1227 177 77 39 chr9 6157994 6158035 -136113409 - MER33 DNA MER1_type -2262 323 285 2271 114 0 0 chr9 6158035 6158341 -136113103 - AluSq SINE Alu -7 306 1 1227 177 77 39 chr9 6158341 6158610 -136112834 - MER33 DNA MER1_type -2300 285 1 493 121 55 22 chr9 6158835 6158926 -136112518 - L1MB3 LINE L1 -2 6181 6088 484 258 108 11 chr9 6159214 6159400 -136112044 + MIR SINE MIR 49 252 -10 1778 97 136 60 chr9 6159444 6159664 -136111780 + L1MCa LINE L1 1723 1981 -4445 1314 209 87 7 chr9 6159664 6159941 -136111503 - AluJo SINE Alu -2 300 2 1778 97 136 60 chr9 6159941 6160072 -136111372 + L1MCa LINE L1 1981 2101 -4325 1702 211 23 8 chr9 6160073 6160424 -136111020 - MER4D LTR ERV1 0 903 548 429 132 60 24 chr9 6160423 6160532 -136110912 - MER4E LTR ERV1 -588 284 62 * 1536 166 55 7 chr9 6160506 6160795 -136110649 - MER49 LTR ERV1 -620 303 1 6333 180 45 91 chr9 6160795 6160939 -136110505 + L1MCa LINE L1 2099 2248 -4178 2304 104 0 0 chr9 6160939 6161238 -136110206 + AluY SINE Alu 1 299 -12 2064 110 28 14 chr9 6161247 6161537 -136109907 + AluSx SINE Alu 1 294 -18 6333 180 45 91 chr9 6161537 6161853 -136109591 + L1MCa LINE L1 2256 2585 -3841 2213 112 0 3 chr9 6161853 6162148 -136109296 + AluSx SINE Alu 1 294 -18 6333 180 45 91 chr9 6162148 6163205 -136108239 + L1MCa LINE L1 2585 3689 -2737 1553 154 0 126 chr9 6163205 6163562 -136107882 + AluJo SINE Alu 1 312 0 6333 180 45 91 chr9 6163562 6164190 -136107254 + L1MCa LINE L1 3689 4122 -2304 2043 144 0 10 chr9 6164190 6164496 -136106948 + AluJb SINE Alu 1 303 -9 6333 180 45 91 chr9 6164496 6164847 -136106597 + L1MCa LINE L1 4122 4487 -1939 204 247 165 17 chr9 6164949 6165085 -136106359 - MER5A DNA MER1_type -23 155 3 30 27 0 0 chr9 6165610 6165647 -136105797 + AT_rich Low_complexity Low_complexity 1 37 0 347 250 135 0 chr9 6166176 6166272 -136105172 - L2 LINE L2 -23 3249 3141 2101 167 32 47 chr9 6167473 6167677 -136103767 + MSTD LTR MaLR 1 198 -198 1556 127 69 33 chr9 6167677 6167953 -136103491 + AluJb SINE Alu 12 297 -15 2101 167 32 47 chr9 6167953 6168150 -136103294 + MSTD LTR MaLR 198 396 0 558 283 73 34 chr9 6168838 6169071 -136102373 - MIR SINE MIR 0 262 21 277 337 11 0 chr9 6169580 6169672 -136101772 - MIR3 SINE MIR -8 200 108 486 281 119 5 chr9 6169692 6169877 -136101567 - MIR SINE MIR -1 261 56 215 254 113 14 chr9 6169900 6169971 -136101473 - MIR3 SINE MIR -125 83 6 483 326 17 6 chr9 6170228 6170406 -136101038 + MER5A DNA MER1_type 9 188 -1 22 0 0 0 chr9 6170606 6170628 -136100816 + AT_rich Low_complexity Low_complexity 1 22 0 834 247 155 43 chr9 6171109 6171737 -136099707 + LTR50 LTR ERVL 3 787 -8 405 279 163 7 chr9 6171941 6172088 -136099356 + MIR SINE MIR 8 177 -85 303 271 225 7 chr9 6172117 6172268 -136099176 + MLT1J LTR MaLR 170 353 -158 182 367 127 13 chr9 6172824 6172903 -136098541 + L2 LINE L2 3133 3220 -52 527 62 0 0 chr9 6175388 6175453 -136095991 + HSMAR1 DNA Mariner 1223 1287 0 603 97 0 174 chr9 6175590 6175745 -136095699 - MER53 DNA DNA -19 170 43 616 159 0 28 chr9 6175755 6175862 -136095582 - U13 snRNA snRNA 0 104 1 495 279 29 23 chr9 6176899 6177071 -136094373 - MER5A DNA MER1_type 0 189 17 289 234 0 85 chr9 6177312 6177365 -136094079 + L2 LINE L2 3208 3251 -62 1041 210 83 5 chr9 6177365 6177570 -136093874 - MER58A DNA MER1_type -3 221 1 289 234 0 85 chr9 6177570 6177610 -136093834 + L2 LINE L2 3251 3293 -20 363 169 28 0 chr9 6178410 6178481 -136092963 - MER116 DNA Mariner -5 75 3 237 227 53 27 chr9 6181081 6181156 -136090288 - L1M3f LINE L1 -5022 306 230 425 325 38 19 chr9 6181946 6182103 -136089341 - L2 LINE L2 -3 3269 3110 668 262 38 99 chr9 6182168 6182391 -136089053 + MLT1J LTR MaLR 1 236 -275 1969 156 3 19 chr9 6182391 6182705 -136088739 + AluJo SINE Alu 1 309 -3 668 262 38 99 chr9 6182705 6182777 -136088667 + MLT1J LTR MaLR 236 311 -200 2188 194 29 52 chr9 6182777 6183293 -136088151 - MLT1D LTR MaLR -1 504 1 668 262 38 99 chr9 6183293 6183439 -136088005 + MLT1J LTR MaLR 311 416 -95 253 300 80 0 chr9 6183522 6183622 -136087822 - L2 LINE L2 -237 3035 2928 1939 123 0 0 chr9 6183971 6184231 -136087213 + AluSx SINE Alu 31 290 -22 250 356 0 0 chr9 6184342 6184401 -136087043 + G-rich Low_complexity Low_complexity 1 59 0 320 169 34 0 chr9 6184434 6184493 -136086951 + LTR40a LTR ERVL 457 517 -2 205 171 0 0 chr9 6184495 6184536 -136086908 + A-rich Low_complexity Low_complexity 3 43 0 344 205 25 57 chr9 6184650 6184772 -136086672 + L1MC4 LINE L1 7098 7215 -827 338 305 117 15 chr9 6184781 6184978 -136086466 + L1MC4 LINE L1 7274 7490 -552 1796 88 0 0 chr9 6185364 6185591 -136085853 - AluY SINE Alu 0 311 85 2413 97 3 0 chr9 6185602 6185912 -136085532 - AluSx SINE Alu 0 312 2 21 0 0 0 chr9 6186003 6186024 -136085420 + AT_rich Low_complexity Low_complexity 1 21 0 2239 86 41 0 chr9 6186332 6186622 -136084822 - AluSx SINE Alu -10 302 1 569 248 33 8 chr9 6187021 6187142 -136084302 + L2 LINE L2 3190 3313 0 21 36 0 0 chr9 6187556 6187584 -136083860 + AT_rich Low_complexity Low_complexity 1 28 0 3578 212 74 30 chr9 6187902 6188187 -136083257 + L1ME1 LINE L1 4724 4995 -1171 2206 103 0 7 chr9 6188187 6188469 -136082975 - AluSx SINE Alu -31 281 2 3578 212 74 30 chr9 6188469 6189554 -136081890 + L1ME1 LINE L1 4995 6161 -5 517 279 49 11 chr9 6189618 6189801 -136081643 - LTR33A LTR ERVL -2 521 332 656 280 213 17 chr9 6189801 6190204 -136081240 - LTR50 LTR ERVL -306 489 8 1029 199 35 87 chr9 6190307 6190528 -136080916 - L1MC5 LINE L1 -728 7233 7071 1729 165 22 41 chr9 6190528 6190844 -136080600 + AluJo SINE Alu 1 310 -2 1029 199 35 87 chr9 6190844 6191031 -136080413 - L1MC5 LINE L1 -890 7071 6876 6393 130 30 65 chr9 6191890 6193621 -136077823 - HERVH LTR ERV1 -5916 1797 1 3112 92 11 9 chr9 6193623 6194070 -136077374 - LTR7 LTR ERV1 -2 448 1 294 308 27 104 chr9 6194081 6194380 -136077064 + L2 LINE L2 2804 3079 -193 2466 77 0 0 chr9 6194576 6194875 -136076569 - AluSc SINE Alu -10 299 1 2344 80 0 43 chr9 6194922 6195248 -136076196 - AluSx SINE Alu 0 312 1 553 192 54 42 chr9 6195252 6195426 -136076018 - L1MC/D LINE L1 -589 5575 5395 21 0 0 0 chr9 6195438 6195459 -136075985 + AT_rich Low_complexity Low_complexity 1 21 0 2354 122 0 0 chr9 6195533 6195845 -136075599 + AluSx SINE Alu 1 312 0 339 344 38 38 chr9 6195898 6196081 -136075363 - MER5A DNA MER1_type 0 189 7 2289 98 0 0 chr9 6196122 6196409 -136075035 - AluSc SINE Alu -22 287 1 2277 99 3 13 chr9 6196872 6197184 -136074260 + AluSc SINE Alu 1 309 0 226 340 46 46 chr9 6197244 6197397 -136074047 - MIR3 SINE MIR -39 169 17 213 270 0 16 chr9 6197421 6197484 -136073960 + MER5A DNA MER1_type 127 188 -1 1592 151 69 7 chr9 6197542 6197847 -136073597 - L1MB8 LINE L1 0 6178 5855 1980 125 10 3 chr9 6197919 6198214 -136073230 + AluJb SINE Alu 1 297 -15 183 314 186 0 chr9 6202967 6203053 -136068391 + MIR SINE MIR 161 262 0 282 271 81 27 chr9 6203228 6203431 -136068013 + L1ME4a LINE L1 5878 6095 -26 2211 105 10 3 chr9 6203431 6203736 -136067708 - AluSq SINE Alu -6 307 1 282 271 81 27 chr9 6203736 6203753 -136067691 + L1ME4a LINE L1 6095 6110 -11 440 168 193 0 chr9 6204046 6204165 -136067279 + MIR SINE MIR 121 262 0 206 224 0 20 chr9 6205691 6205740 -136065704 + C-rich Low_complexity Low_complexity 2 49 0 22 89 0 0 chr9 6205922 6205967 -136065477 + GC_rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr9 6206020 6206058 -136065386 + GC_rich Low_complexity Low_complexity 1 38 0 300 305 71 108 chr9 6206286 6206748 -136064696 - L1M2 LINE L1 -5761 1088 644 768 184 55 18 chr9 6207775 6207938 -136063506 + MIR SINE MIR 91 259 -3 238 217 22 0 chr9 6208408 6208454 -136062990 - L3 LINE CR1 -7 1570 1524 23 33 0 0 chr9 6208562 6208592 -136062852 + AT_rich Low_complexity Low_complexity 1 30 0 1936 85 22 0 chr9 6208596 6208866 -136062578 - AluSx SINE Alu -36 276 1 269 269 60 0 chr9 6209642 6209709 -136061735 + MIR3 SINE MIR 89 159 -49 356 238 25 0 chr9 6210130 6210210 -136061234 + Charlie7 DNA MER1_type 3 84 -2528 37 39 0 0 chr9 6210293 6210344 -136061100 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 6210882 6210903 -136060541 + AT_rich Low_complexity Low_complexity 1 21 0 1684 166 30 27 chr9 6211111 6211407 -136060037 + AluSq SINE Alu 2 298 -15 213 186 0 23 chr9 6211846 6211889 -136059555 - L2 LINE L2 -5 3267 3226 236 296 84 0 chr9 6212428 6212499 -136058945 - L2 LINE L2 -5 3267 3191 224 357 137 15 chr9 6212578 6213032 -136058412 - L2 LINE L2 -376 2938 2430 393 263 50 12 chr9 6213908 6214068 -136057376 + L1ME4a LINE L1 5951 6116 -5 192 274 119 24 chr9 6214225 6214309 -136057135 - L2 LINE L2 -1 3271 3180 272 318 88 46 chr9 6214339 6214515 -136056929 - L2 LINE L2 -310 2962 2793 23 0 0 0 chr9 6214994 6215017 -136056427 + AT_rich Low_complexity Low_complexity 1 23 0 310 320 98 7 chr9 6215918 6216071 -136055373 + L2 LINE L2 2307 2473 -841 260 276 145 41 chr9 6216189 6216334 -136055110 + L2 LINE L2 3154 3313 0 1965 150 0 38 chr9 6217467 6217787 -136053657 + AluSx SINE Alu 4 311 -1 22 56 0 0 chr9 6217903 6217939 -136053505 + AT_rich Low_complexity Low_complexity 1 36 0 292 303 183 6 chr9 6217947 6218122 -136053322 + L2 LINE L2 2195 2400 -914 242 327 111 7 chr9 6218418 6218571 -136052873 - L2 LINE L2 -1354 1960 1792 2347 82 3 3 chr9 6218895 6219199 -136052245 + AluSp SINE Alu 1 304 -9 613 240 74 4 chr9 6219727 6220224 -136051220 - Charlie7 DNA MER1_type 0 2612 2020 1492 251 122 9 chr9 6220226 6220685 -136050759 + LTR33 LTR ERVL 1 511 -10 585 131 82 112 chr9 6220695 6220758 -136050686 - Charlie7 DNA MER1_type -591 2021 1958 2254 102 10 0 chr9 6220758 6221061 -136050383 - AluSx SINE Alu -6 306 1 585 131 82 112 chr9 6221061 6221203 -136050241 - Charlie7 DNA MER1_type -654 1958 1822 21 36 0 0 chr9 6221628 6221656 -136049788 + AT_rich Low_complexity Low_complexity 1 28 0 1017 302 79 23 chr9 6221800 6222349 -136049095 - L2 LINE L2 -14 3299 2705 2154 125 0 7 chr9 6222349 6222654 -136048790 - AluSx SINE Alu -9 303 1 1017 302 79 23 chr9 6222654 6222767 -136048677 - L2 LINE L2 -608 2705 2600 189 0 0 0 chr9 6222893 6222914 -136048530 + (TA)n Simple_repeat Simple_repeat 1 21 0 666 318 84 14 chr9 6222968 6223453 -136047991 - L1MC4a LINE L1 -1903 5974 5456 21 36 0 0 chr9 6223819 6223847 -136047597 + AT_rich Low_complexity Low_complexity 1 28 0 1900 125 45 3 chr9 6224266 6224554 -136046890 + AluJb SINE Alu 1 300 -12 860 169 38 76 chr9 6224775 6224959 -136046485 - AluJb SINE Alu -10 302 126 2284 96 3 13 chr9 6224959 6225273 -136046171 - AluSp SINE Alu -2 311 1 24 53 0 0 chr9 6226009 6226047 -136045397 + AT_rich Low_complexity Low_complexity 1 38 0 196 375 0 0 chr9 6226184 6226240 -136045204 - L3 LINE CR1 -1 1576 1521 192 255 43 0 chr9 6226386 6226433 -136045011 - MIR SINE MIR -60 148 100 591 253 10 3 chr9 6227048 6227244 -136044200 - MIR SINE MIR 0 262 6 23 0 0 0 chr9 6227550 6227573 -136043871 + AT_rich Low_complexity Low_complexity 1 23 0 4763 77 22 2 chr9 6227608 6228248 -136043196 + L1PA10 LINE L1 5507 6159 -9 1939 241 104 22 chr9 6228387 6228409 -136043035 - L1MC4a LINE L1 -847 5368 5349 2352 94 3 0 chr9 6228409 6228718 -136042726 - AluSp SINE Alu -3 310 1 1939 241 104 22 chr9 6228718 6229578 -136041866 - L1MC4a LINE L1 -866 5349 4365 509 222 36 30 chr9 6229574 6229741 -136041703 - L1MC4a LINE L1 -3633 2582 2415 * 1443 240 84 57 chr9 6229717 6230215 -136041229 - L1MC4a LINE L1 -4257 2139 1611 396 0 0 0 chr9 6230215 6230259 -136041185 + (TG)n Simple_repeat Simple_repeat 2 45 0 1443 240 84 57 chr9 6230259 6230547 -136040897 - L1MC4a LINE L1 -4785 1611 1332 286 190 175 36 chr9 6230557 6230694 -136040750 - L1MC4a LINE L1 -5267 1129 974 615 296 89 25 chr9 6230706 6231101 -136040343 - L1MC4a LINE L1 -5483 913 494 273 231 0 0 chr9 6231161 6231213 -136040231 - MER2 DNA MER2_type 0 345 294 405 358 55 12 chr9 6231308 6231473 -136039971 - L1MC4a LINE L1 -6012 384 213 2283 138 104 3 chr9 6231474 6231858 -136039586 - MSTC LTR MaLR 0 428 6 571 243 40 12 chr9 6231872 6232045 -136039399 - L1MC4a LINE L1 -6183 213 36 210 143 0 0 chr9 6232153 6232188 -136039256 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1080 59 0 0 chr9 6232190 6232325 -136039119 - L1PB1 LINE L1 -7 6144 6010 310 269 48 87 chr9 6232349 6232557 -136038887 - L1ME3 LINE L1 -295 5867 5668 548 97 18 26 chr9 6232558 6232671 -136038773 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 216 290 145 0 chr9 6232671 6232733 -136038711 + L2 LINE L2 2250 2320 -994 357 331 70 6 chr9 6232937 6233094 -136038350 - LTR33 LTR ERVL -265 256 90 219 69 0 0 chr9 6233268 6233297 -136038147 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2135 132 7 0 chr9 6234177 6234487 -136036957 - AluSx SINE Alu 0 312 1 1852 148 20 10 chr9 6234687 6234990 -136036454 - AluJb SINE Alu -6 306 1 415 350 0 21 chr9 6235195 6235338 -136036106 + LTR67 LTR ERVL 13 152 -405 467 233 40 45 chr9 6235501 6235677 -136035767 + LTR67 LTR ERVL 380 554 -3 2294 70 42 0 chr9 6236371 6236656 -136034788 - AluY SINE Alu -14 297 1 195 320 48 39 chr9 6237091 6237194 -136034250 + MIR SINE MIR 41 144 -64 624 190 83 24 chr9 6238036 6238241 -136033203 - HAL1 LINE L1 -30 2477 2261 2181 206 71 36 chr9 6238514 6238756 -136032688 - L1MEc LINE L1 -5227 1169 937 2309 106 3 13 chr9 6238756 6239068 -136032376 - AluSq SINE Alu -4 309 1 2181 206 71 36 chr9 6239068 6239443 -136032001 - L1MEc LINE L1 -5459 937 530 1193 255 66 45 chr9 6239471 6239867 -136031577 - L1MEc LINE L1 -5955 441 38 532 285 68 41 chr9 6239888 6240299 -136031145 - L1MEc LINE L1 -4729 1667 1246 1744 174 24 0 chr9 6240317 6240615 -136030829 - AluJo SINE Alu -7 305 1 2134 132 0 0 chr9 6240749 6241037 -136030407 - AluSx SINE Alu -24 288 1 250 284 67 8 chr9 6241261 6241395 -136030049 - HAL1 LINE L1 -862 1645 1504 2270 191 34 0 chr9 6241395 6241813 -136029631 - MSTB1 LTR MaLR 0 432 1 393 321 82 51 chr9 6241832 6242443 -136029001 - L1MEc LINE L1 -5167 1038 409 23 33 0 0 chr9 6242529 6242559 -136028885 + AT_rich Low_complexity Low_complexity 1 30 0 1794 182 76 50 chr9 6242749 6243142 -136028302 - L1M4 LINE L1 -435 5749 5317 2204 125 0 3 chr9 6243142 6243453 -136027991 - AluSq SINE Alu -3 310 1 1794 182 76 50 chr9 6243453 6243760 -136027684 - L1M4 LINE L1 -867 5317 5019 23 0 0 0 chr9 6243936 6243959 -136027485 + AT_rich Low_complexity Low_complexity 1 23 0 2240 102 0 7 chr9 6244376 6244680 -136026764 + AluSx SINE Alu 1 302 -10 2283 114 0 0 chr9 6247464 6247771 -136023673 + AluSg SINE Alu 1 307 -3 28 0 0 0 chr9 6247781 6247809 -136023635 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr9 6247826 6247854 -136023590 + AT_rich Low_complexity Low_complexity 1 28 0 464 203 133 31 chr9 6248450 6248511 -136022933 - MER103 DNA DNA 0 166 113 555 253 119 66 chr9 6248511 6248831 -136022613 - MER46C DNA MER2_type -1 337 1 464 203 133 31 chr9 6248831 6248897 -136022547 - MER103 DNA DNA -53 113 26 14261 23 2 0 chr9 6249152 6252076 -136019368 - L1PA2 LINE L1 0 6155 3227 2003 19 0 0 chr9 6252072 6252329 -136019115 + L1PA2 LINE L1 2981 3237 -2909 * 23 0 0 0 chr9 6252715 6252738 -136018706 + AT_rich Low_complexity Low_complexity 1 23 0 446 250 55 30 chr9 6253244 6253444 -136018000 - L1ME4a LINE L1 -205 5916 5712 2421 91 0 0 chr9 6253634 6253942 -136017502 - AluSq SINE Alu -5 308 1 703 212 42 94 chr9 6254693 6254905 -136016539 - MIR SINE MIR -3 259 59 593 130 10 0 chr9 6255601 6255701 -136015743 - FLAM_A SINE Alu -26 116 16 27 0 0 0 chr9 6256407 6256434 -136015010 + AT_rich Low_complexity Low_complexity 1 27 0 379 294 95 50 chr9 6256630 6256851 -136014593 + MIR SINE MIR 20 250 -12 592 296 42 19 chr9 6256891 6257107 -136014337 + MIR SINE MIR 35 255 -7 251 376 73 18 chr9 6257327 6257436 -136014008 - L2 LINE L2 -50 3222 3108 774 222 53 113 chr9 6257592 6257858 -136013586 - MIR SINE MIR -3 259 10 2352 110 0 0 chr9 6259108 6259416 -136012028 - AluSq SINE Alu -5 308 1 3127 99 12 12 chr9 6259575 6260061 -136011383 - MER41A LTR ERV1 -68 486 1 480 267 105 53 chr9 6260068 6260315 -136011129 - HAL1 LINE L1 -1172 1335 1076 567 81 12 0 chr9 6260349 6260435 -136011009 - L1M4 LINE L1 -3424 2722 2636 237 211 0 0 chr9 6262213 6262270 -136009174 + (TA)n Simple_repeat Simple_repeat 1 57 0 1984 62 0 4 chr9 6262939 6263180 -136008264 + AluSc SINE Alu 61 300 -9 4700 163 49 37 chr9 6265049 6266339 -136005105 - L1MA9 LINE L1 -5 7726 6416 396 104 0 0 chr9 6266348 6266415 -136005029 - L1MA3 LINE L1 -1 6304 6238 339 62 44 239 chr9 6266415 6266477 -136004967 - L1MA2 LINE L1 -196 6108 6076 1599 193 44 0 chr9 6266477 6266751 -136004693 - AluJo SINE Alu -26 286 1 339 62 44 239 chr9 6266751 6266801 -136004643 - L1MA2 LINE L1 -228 6076 6018 11554 153 45 70 chr9 6266805 6267081 -136004363 - L1MA9 LINE L1 -1139 6426 6145 1629 181 40 27 chr9 6267081 6267451 -136003993 + THE1C LTR MaLR 1 375 0 11554 153 45 70 chr9 6267451 6267782 -136003662 - L1MA9 LINE L1 -1420 6145 5807 2249 120 3 0 chr9 6267782 6268090 -136003354 - AluSq SINE Alu -4 309 1 11554 153 45 70 chr9 6268090 6268483 -136002961 - L1MA9 LINE L1 -1758 5807 5406 3294 115 33 4 chr9 6268483 6268523 -136002921 - L1MA2 LINE L1 0 6304 6267 1879 161 0 31 chr9 6268523 6268840 -136002604 - AluJb SINE Alu -5 307 1 3294 115 33 4 chr9 6268840 6269345 -136002099 - L1MA2 LINE L1 -37 6267 5743 11554 153 45 70 chr9 6269345 6270387 -136001057 - L1MA9 LINE L1 -2159 5406 4340 1665 187 38 0 chr9 6270387 6270676 -136000768 - AluJb SINE Alu -12 300 1 11554 153 45 70 chr9 6270676 6272565 -135998879 - L1MA9 LINE L1 -3225 4340 2654 2439 64 3 0 chr9 6272565 6272862 -135998582 - AluY SINE Alu -13 298 1 11554 153 45 70 chr9 6272862 6274184 -135997260 - L1MA9 LINE L1 -4911 2654 1301 287 263 184 11 chr9 6274291 6274481 -135996963 + MER113 DNA MER1_type? 5 227 -294 1224 177 0 32 chr9 6274491 6274711 -135996733 + AluJb SINE Alu 3 215 -97 557 202 0 0 chr9 6274894 6274988 -135996456 + AluJb SINE Alu 198 291 -21 362 275 72 18 chr9 6275029 6275196 -135996248 + MER113 DNA MER1_type? 297 472 -49 30 59 0 0 chr9 6275247 6275298 -135996146 + AT_rich Low_complexity Low_complexity 1 51 0 793 242 57 8 chr9 6275583 6275847 -135995597 - L1ME1 LINE L1 -48 6118 5842 920 196 63 1 chr9 6275854 6276058 -135995386 - L1PB4 LINE L1 -2 6164 5948 1240 228 112 36 chr9 6276058 6276569 -135994875 - L1ME1 LINE L1 -339 5827 5320 964 240 65 0 chr9 6276579 6276808 -135994636 - AluJo SINE Alu -66 246 3 373 153 41 31 chr9 6276809 6276907 -135994537 - L1ME1 LINE L1 -821 5325 5227 * 3469 177 39 49 chr9 6276906 6277803 -135993641 - L1MB3 LINE L1 -65 6820 5934 483 200 62 76 chr9 6277809 6277954 -135993490 + Tigger3(Golem) DNA MER2_type 1 143 -2886 * 1375 169 4 11 chr9 6277950 6278210 -135993234 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 2946 267 35 16 chr9 6278210 6279363 -135992081 - L1MB3 LINE L1 -920 5928 4727 1960 142 0 37 chr9 6279363 6279408 -135992036 - AluSx SINE Alu 0 312 267 558 43 0 0 chr9 6279408 6279477 -135991967 + (TGG)n Simple_repeat Simple_repeat 2 70 0 1960 142 0 37 chr9 6279477 6279755 -135991689 - AluSx SINE Alu -45 267 1 2946 267 35 16 chr9 6279755 6279895 -135991549 - L1MB3 LINE L1 -2121 4727 4591 2655 135 41 3 chr9 6279888 6280471 -135990973 - L1M1 LINE L1 -541 5762 5164 * 751 164 8 8 chr9 6280494 6280622 -135990822 + AluJb SINE Alu 172 299 -13 433 230 7 30 chr9 6280624 6280759 -135990685 + L1 LINE L1 2764 2895 -3251 7242 216 55 37 chr9 6280760 6282891 -135988553 - L1MB3 LINE L1 -4679 2170 1 6600 162 35 18 chr9 6282890 6283030 -135988414 - L1M1 LINE L1 -1011 5135 4999 * 2213 113 7 13 chr9 6283030 6283339 -135988105 - AluSx SINE Alu -5 307 1 6600 162 35 18 chr9 6283339 6284599 -135986845 - L1M1 LINE L1 -1147 4999 3711 1599 221 14 45 chr9 6284601 6285057 -135986387 - L1M4 LINE L1 -1194 4952 4512 2233 136 0 0 chr9 6285057 6285367 -135986077 - AluSg SINE Alu 0 310 1 1599 221 14 45 chr9 6285367 6285422 -135986022 - L1M4 LINE L1 -1634 4512 4457 1351 153 5 23 chr9 6285475 6285690 -135985754 - AluJb SINE Alu -16 296 86 2101 130 3 13 chr9 6285703 6286019 -135985425 - AluSq SINE Alu 0 313 1 1759 144 26 52 chr9 6286019 6286324 -135985120 - AluSq SINE Alu -15 298 1 2411 220 58 74 chr9 6286354 6286763 -135984681 - L1M4 LINE L1 -1793 4353 3939 2227 117 3 0 chr9 6286763 6287072 -135984372 - AluSq SINE Alu -3 310 1 2411 220 58 74 chr9 6287072 6287337 -135984107 - L1M4 LINE L1 -2207 3939 3695 2347 82 0 13 chr9 6287337 6287641 -135983803 - AluY SINE Alu -11 300 1 2411 220 58 74 chr9 6287641 6287885 -135983559 - L1M4 LINE L1 -2451 3695 3449 452 359 42 9 chr9 6288856 6289073 -135982371 - MIR SINE MIR -5 257 34 2402 235 62 13 chr9 6289210 6289903 -135981541 + Cheshire DNA MER1_type 1 727 -1693 1202 220 33 3 chr9 6289894 6290194 -135981250 + Cheshire DNA MER1_type 940 1248 -1172 * 783 200 29 44 chr9 6290197 6290589 -135980855 + Cheshire DNA MER1_type 1373 2249 -171 959 206 31 182 chr9 6290599 6291317 -135980127 - L1M4 LINE L1 -1222 4924 4316 * 19874 156 21 10 chr9 6291312 6295599 -135975845 - L1PA11 LINE L1 -5 7607 3272 2202 94 7 17 chr9 6295599 6295896 -135975548 + AluSc SINE Alu 1 294 -15 19874 156 21 10 chr9 6295896 6296458 -135974986 - L1PA11 LINE L1 -4340 3272 2718 1073 143 15 0 chr9 6296464 6296660 -135974784 - L1P LINE L1 -3577 2569 2371 * 2297 205 45 30 chr9 6296656 6297721 -135973723 - L1PA11 LINE L1 -3551 4033 983 1537 222 109 2 chr9 6297722 6298274 -135973170 - L1M4 LINE L1 -1804 4840 4195 647 251 66 29 chr9 6298293 6298514 -135972930 - L1M4 LINE L1 -2713 3931 3689 1457 221 10 0 chr9 6298514 6298803 -135972641 + AluJo SINE Alu 1 292 -20 647 251 66 29 chr9 6298803 6298959 -135972485 - L1M4 LINE L1 -2955 3689 3540 1925 151 7 3 chr9 6298976 6299275 -135972169 - AluJo SINE Alu -12 300 1 624 72 10 21 chr9 6299305 6299402 -135972042 - THE1C-int LTR MaLR -1484 96 1 2549 105 13 8 chr9 6299402 6299775 -135971669 - THE1C LTR MaLR 0 375 1 2079 226 94 23 chr9 6299776 6300662 -135970782 - L1M4 LINE L1 -4833 1709 835 2410 74 0 12 chr9 6300681 6301020 -135970424 - L1PB1 LINE L1 -75 6076 5742 2393 122 129 9 chr9 6301078 6301511 -135969933 - MER31A LTR ERV1 0 485 1 21 0 0 0 chr9 6301916 6301937 -135969507 + AT_rich Low_complexity Low_complexity 1 21 0 2373 133 81 60 chr9 6302143 6302639 -135968805 - LTR8A LTR ERV1 0 727 222 1981 127 0 20 chr9 6302717 6303047 -135968397 - AluSx SINE Alu 0 324 1 413 337 96 38 chr9 6304029 6304427 -135967017 + HAL1 LINE L1 1181 1601 -906 439 291 156 14 chr9 6304691 6305007 -135966437 + L1MC4a LINE L1 5299 5569 -558 210 37 0 0 chr9 6305007 6305034 -135966410 + (TA)n Simple_repeat Simple_repeat 1 27 0 439 291 156 14 chr9 6305034 6305252 -135966192 + L1MC4a LINE L1 5569 5932 -195 227 292 108 0 chr9 6305610 6305740 -135965704 + L1ME4a LINE L1 5978 6121 0 2977 90 33 11 chr9 6305953 6306407 -135965037 + MER4C LTR ERV1 2 465 0 1924 165 138 37 chr9 6306424 6306910 -135964534 - LTR10A LTR ERV1 -61 548 14 1336 92 61 0 chr9 6307375 6307571 -135963873 + LTR8A LTR ERV1 1 208 -519 759 162 0 0 chr9 6307571 6307688 -135963756 - FLAM_C SINE Alu -26 117 1 743 211 12 19 chr9 6307872 6308033 -135963411 - MIR SINE MIR -29 233 74 2521 230 48 11 chr9 6308201 6308862 -135962582 - L1ME1 LINE L1 -192 6043 5358 1071 214 70 0 chr9 6308864 6309149 -135962295 - L1ME1 LINE L1 -1191 5024 4720 42520 43 11 5 chr9 6309324 6312287 -135959157 - L1PA4 LINE L1 -3 6152 3208 2860 7 0 0 chr9 6312287 6312597 -135958847 - AluY SINE Alu -1 310 1 42520 43 11 5 chr9 6312597 6315745 -135955699 - L1PA4 LINE L1 -2947 3208 7 243 0 0 0 chr9 6315746 6315773 -135955671 + (C)n Simple_repeat Simple_repeat 1 27 0 4077 230 138 31 chr9 6315775 6316560 -135954884 - L1ME1 LINE L1 -1508 4707 4007 7838 26 0 0 chr9 6316560 6318261 -135953183 + L1PA2 LINE L1 4453 6154 -1 4077 230 138 31 chr9 6318261 6319170 -135952274 - L1ME1 LINE L1 -2208 4007 2833 373 184 23 23 chr9 6319157 6319244 -135952200 - L1ME1 LINE L1 -4472 1924 1838 * 22 0 0 0 chr9 6319263 6319285 -135952159 + AT_rich Low_complexity Low_complexity 1 22 0 469 258 129 41 chr9 6319310 6319698 -135951746 - L1ME1 LINE L1 -5142 1254 833 * 761 268 39 9 chr9 6319690 6319921 -135951523 - L1ME1 LINE L1 -6066 330 93 2459 68 0 10 chr9 6320512 6320822 -135950622 - AluY SINE Alu -4 307 1 197 116 0 23 chr9 6322403 6322446 -135948998 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr9 6322460 6322492 -135948952 + AT_rich Low_complexity Low_complexity 1 32 0 331 296 59 30 chr9 6322540 6322709 -135948735 + L1ME4a LINE L1 5743 5916 -205 566 317 95 21 chr9 6323643 6323886 -135947558 + MIR SINE MIR 2 262 0 255 313 104 22 chr9 6324084 6324218 -135947226 + MIR SINE MIR 77 221 -41 735 256 103 0 chr9 6324308 6324511 -135946933 - MIR SINE MIR -38 224 1 450 292 141 48 chr9 6326391 6326703 -135944741 - L2 LINE L2 -42 3271 2931 2283 100 7 0 chr9 6327043 6327342 -135944102 - AluSx SINE Alu -11 301 1 295 65 0 87 chr9 6328176 6328222 -135943222 - L1ME LINE L1 -512 5654 5613 893 281 127 27 chr9 6328225 6328925 -135942519 - L1MEc LINE L1 -5571 825 56 193 267 22 0 chr9 6329260 6329305 -135942139 - L2 LINE L2 -18 3254 3209 197 324 93 86 chr9 6330098 6330237 -135941207 + MIR3 SINE MIR 21 160 -48 1907 177 80 6 chr9 6330618 6330968 -135940476 + MER6A DNA MER2_type 43 418 -187 31 18 0 53 chr9 6332034 6332091 -135939353 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr9 6332286 6332329 -135939115 + AT_rich Low_complexity Low_complexity 1 43 0 1775 123 67 7 chr9 6332800 6333084 -135938360 + AluSx SINE Alu 1 301 -11 1804 98 130 144 chr9 6333750 6334002 -135937442 - MSTA LTR MaLR 0 428 183 1997 110 3 26 chr9 6334002 6334310 -135937134 - AluSx SINE Alu -3 309 9 1804 98 130 144 chr9 6334310 6334487 -135936957 - MSTA LTR MaLR -245 183 5 2123 136 26 6 chr9 6334496 6334841 -135936603 - MSTA-int LTR MaLR -6 1645 1294 9368 210 86 49 chr9 6334848 6335687 -135935757 - L1MB8 LINE L1 -78 6336 5530 1674 186 27 3 chr9 6335687 6335983 -135935461 - AluJo SINE Alu -9 303 1 9368 210 86 49 chr9 6335983 6337650 -135933794 - L1MB8 LINE L1 -884 5530 3927 2013 114 21 4 chr9 6337650 6337930 -135933514 + AluSc SINE Alu 3 287 -22 9368 210 86 49 chr9 6337930 6339127 -135932317 - L1MB8 LINE L1 -2487 3927 2776 246 32 0 0 chr9 6339127 6339158 -135932286 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9368 210 86 49 chr9 6339158 6339442 -135932002 - L1MB8 LINE L1 -3638 2776 2504 270 56 0 0 chr9 6339442 6339478 -135931966 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9368 210 86 49 chr9 6339478 6340427 -135931017 - L1MB8 LINE L1 -3910 2504 1162 670 286 18 23 chr9 6340546 6340717 -135930727 - MLT1I LTR MaLR -191 218 49 423 344 48 11 chr9 6340873 6341062 -135930382 + MIR SINE MIR 50 245 -17 1208 278 115 35 chr9 6341833 6342711 -135928733 + HAL1 LINE L1 586 1533 -974 281 273 61 18 chr9 6342793 6342958 -135928486 - L1MC5 LINE L1 -188 7773 7602 22 35 0 0 chr9 6343026 6343055 -135928389 + AT_rich Low_complexity Low_complexity 1 29 0 6490 40 0 0 chr9 6343055 6343828 -135927616 - L1PA5 LINE L1 -8 6146 5374 1557 39 20 0 chr9 6343827 6344031 -135927413 + L1PA5 LINE L1 5156 5363 -783 * 236 247 41 0 chr9 6344073 6344146 -135927298 + HAL1 LINE L1 2432 2507 0 23 92 0 0 chr9 6345654 6345719 -135925725 + AT_rich Low_complexity Low_complexity 1 65 0 248 241 96 0 chr9 6346086 6346169 -135925275 + L1MC/D LINE L1 5801 5891 -1917 187 272 136 0 chr9 6346841 6346922 -135924522 + MIR3 SINE MIR 89 180 -28 294 73 0 0 chr9 6347254 6347295 -135924149 + (TCCCC)n Simple_repeat Simple_repeat 5 45 0 1499 139 20 90 chr9 6347315 6347616 -135923828 - AluJb SINE Alu -32 280 1 2067 111 14 24 chr9 6347797 6348094 -135923350 + AluSg SINE Alu 1 294 -16 691 164 16 8 chr9 6348319 6348441 -135923003 - FLAM_A SINE Alu -10 123 1 324 275 84 35 chr9 6348492 6348774 -135922670 - L1MEc LINE L1 -4933 1659 1344 3311 105 91 36 chr9 6348908 6349034 -135922410 - LTR24C LTR ERV1 0 635 517 2009 123 27 0 chr9 6349034 6349326 -135922118 + AluSx SINE Alu 1 300 -12 2440 84 3 0 chr9 6349330 6349638 -135921806 + AluSx SINE Alu 1 309 -3 3311 105 91 36 chr9 6349638 6350108 -135921336 - LTR24C LTR ERV1 -120 515 1 21 36 0 0 chr9 6350183 6350211 -135921233 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 61 61 chr9 6350569 6350716 -135920728 + L2 LINE L2 1964 2110 -1204 227 279 76 0 chr9 6350741 6350820 -135920624 - L2 LINE L2 -13 3300 3216 355 308 51 8 chr9 6350898 6351015 -135920429 + L2 LINE L2 3150 3271 -1 878 208 31 16 chr9 6351065 6351257 -135920187 - MER3 DNA MER1_type -8 201 7 812 292 78 25 chr9 6352413 6352727 -135918717 - HAL1 LINE L1 -76 2431 2080 1659 136 65 127 chr9 6352727 6353176 -135918268 - MER61B LTR ERV1 -4 421 1 812 292 78 25 chr9 6353176 6353350 -135918094 - HAL1 LINE L1 -427 2080 1917 2238 107 3 0 chr9 6353351 6353659 -135917785 - AluSp SINE Alu -4 309 1 21 0 0 0 chr9 6353727 6353748 -135917696 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr9 6353820 6353854 -135917590 + (TG)n Simple_repeat Simple_repeat 2 35 0 39832 73 8 3 chr9 6354034 6360147 -135911297 - L1PA5 LINE L1 -8 6146 3 492 259 54 7 chr9 6360148 6360295 -135911149 - HAL1 LINE L1 -585 1922 1769 850 316 103 58 chr9 6360353 6361129 -135910315 - HAL1 LINE L1 -1693 814 4 21 0 0 0 chr9 6361731 6361752 -135909692 + AT_rich Low_complexity Low_complexity 1 21 0 433 215 69 15 chr9 6361846 6361976 -135909468 + L1ME3A LINE L1 5810 5946 -224 793 310 46 20 chr9 6362268 6362749 -135908695 + L2 LINE L2 2753 3313 0 437 289 234 15 chr9 6363178 6363379 -135908065 - MIR SINE MIR -13 249 5 209 356 0 14 chr9 6363475 6363548 -135907896 - L2 LINE L2 -50 3263 3192 286 287 130 9 chr9 6364425 6364533 -135906911 - L2 LINE L2 -2 3311 3191 2196 67 17 17 chr9 6364735 6365034 -135906410 - AluY SINE Alu -12 299 1 401 206 130 54 chr9 6365212 6365490 -135905954 - L1 LINE L1 -2365 3781 3465 286 98 61 0 chr9 6365491 6365573 -135905871 + (TA)n Simple_repeat Simple_repeat 2 88 0 2071 126 10 0 chr9 6365573 6365875 -135905569 - AluSg SINE Alu -5 305 1 279 291 45 8 chr9 6365885 6366019 -135905425 - L1 LINE L1 -2672 3474 3336 326 170 113 70 chr9 6366199 6366350 -135905094 - L1ME3 LINE L1 -287 5875 5733 422 310 55 30 chr9 6366354 6366683 -135904761 - L1MC4 LINE L1 -214 7828 7492 349 302 189 0 chr9 6367262 6367431 -135904013 - L1MC4 LINE L1 -546 7496 7296 888 257 81 40 chr9 6367753 6368123 -135903321 + L1MEc LINE L1 43 427 -5969 * 957 166 90 18 chr9 6368121 6368344 -135903100 + L1MEc LINE L1 996 1234 -5162 21 36 0 0 chr9 6368819 6368847 -135902597 + AT_rich Low_complexity Low_complexity 1 28 0 2242 141 49 33 chr9 6369098 6369523 -135901921 - Tigger2a DNA MER2_type -2 432 1 576 229 70 84 chr9 6369536 6369871 -135901573 - L1ME3A LINE L1 -333 5837 5514 189 0 0 0 chr9 6370017 6370038 -135901406 + (T)n Simple_repeat Simple_repeat 1 21 0 13668 68 15 6 chr9 6370124 6371890 -135899554 - HERVL-A1 LTR ERVL -3872 1782 1 3427 51 13 27 chr9 6371890 6372340 -135899104 - MLT2A1 LTR ERVL 0 444 1 1021 286 113 43 chr9 6372526 6373731 -135897713 - L1MEd LINE L1 -4656 1473 269 230 309 114 65 chr9 6374670 6374793 -135896651 - L2 LINE L2 -6 3307 3179 1102 145 56 23 chr9 6375279 6375493 -135895951 - AluJo SINE Alu -11 301 81 1783 139 100 9 chr9 6375908 6376239 -135895205 - MER46B DNA MER2_type 0 236 1 428 353 42 32 chr9 6376798 6376988 -135894456 - MIR3 SINE MIR -2 206 15 24 0 0 0 chr9 6377686 6377710 -135893734 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 6377793 6377817 -135893627 + AT_rich Low_complexity Low_complexity 1 24 0 336 290 48 0 chr9 6377946 6378070 -135893374 + MER103 DNA DNA 34 163 -3 182 216 0 0 chr9 6380233 6380270 -135891174 + MIR3 SINE MIR 172 208 0 517 196 45 15 chr9 6380489 6380622 -135890822 - MIR3 SINE MIR -5 203 67 2500 74 6 3 chr9 6381236 6381548 -135889896 - AluSq SINE Alu 0 313 1 2109 103 4 0 chr9 6382845 6383126 -135888318 - AluSx SINE Alu -30 282 1 2169 113 17 0 chr9 6383906 6384207 -135887237 - AluSq SINE Alu -7 306 1 195 304 54 0 chr9 6384891 6384947 -135886497 - L2 LINE L2 -4 3268 3210 210 118 0 0 chr9 6385485 6385519 -135885925 + (TG)n Simple_repeat Simple_repeat 2 35 0 383 352 93 10 chr9 6385549 6385742 -135885702 - MIR SINE MIR -6 256 48 21 0 0 0 chr9 6385815 6385836 -135885608 + AT_rich Low_complexity Low_complexity 1 21 0 1901 121 10 17 chr9 6385916 6386206 -135885238 + AluSx SINE Alu 1 288 -24 28 0 0 0 chr9 6386283 6386311 -135885133 + AT_rich Low_complexity Low_complexity 1 28 0 1762 148 93 3 chr9 6386735 6387046 -135884398 - MER44D DNA MER2_type 0 609 1 2106 117 0 0 chr9 6387112 6387426 -135884018 + AluSx SINE Alu 1 314 0 217 372 64 11 chr9 6388995 6389089 -135882355 - L2 LINE L2 -4 3268 3170 448 372 202 2 chr9 6389191 6389613 -135881831 - L2 LINE L2 -209 3063 2550 410 250 44 127 chr9 6389940 6390201 -135881243 - L3 LINE CR1 -202 1375 1143 2358 96 0 13 chr9 6390201 6390514 -135880930 - AluSc SINE Alu 0 309 1 410 250 44 127 chr9 6390514 6390568 -135880876 - L3 LINE CR1 -434 1143 1086 306 305 130 37 chr9 6390713 6390959 -135880485 + L1MC4 LINE L1 7381 7649 -393 228 171 0 0 chr9 6390972 6391007 -135880437 - tRNA-Val-GTG tRNA tRNA -39 37 3 565 234 94 61 chr9 6391020 6391383 -135880061 + L1MC5 LINE L1 7551 7925 -36 205 211 0 0 chr9 6391430 6391468 -135879976 + L3 LINE CR1 1081 1118 -459 208 313 116 36 chr9 6391598 6391710 -135879734 + L3 LINE CR1 1384 1504 -73 2427 84 0 7 chr9 6392576 6392885 -135878559 - AluSg SINE Alu -3 307 1 21 36 0 0 chr9 6392972 6393000 -135878444 + AT_rich Low_complexity Low_complexity 1 28 0 282 296 112 18 chr9 6393020 6393189 -135878255 + L2 LINE L2 2356 2540 -774 206 218 18 36 chr9 6393857 6393912 -135877532 + L2 LINE L2 3242 3295 -18 380 300 140 0 chr9 6396551 6396701 -135874743 + MIR SINE MIR 86 256 -6 1993 134 3 0 chr9 6397528 6397812 -135873632 - AluSx SINE Alu -27 285 1 4593 111 22 4 chr9 6397825 6398540 -135872904 - L1PB1 LINE L1 -2 6149 5422 203 226 0 19 chr9 6398995 6399048 -135872396 + MIR SINE MIR 210 261 -1 2358 84 3 0 chr9 6399062 6399358 -135872086 - AluSp SINE Alu -16 297 1 745 253 107 9 chr9 6399371 6399596 -135871848 - MIR SINE MIR -14 248 2 1734 157 7 20 chr9 6399720 6400013 -135871431 + AluJo SINE Alu 6 294 -18 1334 142 6 120 chr9 6401959 6402318 -135869126 + Cheshire DNA MER1_type 2103 2420 0 2158 192 102 17 chr9 6402539 6403205 -135868239 - L1MB1 LINE L1 -28 6161 5436 1203 221 124 53 chr9 6403228 6403848 -135867596 - L1MC5 LINE L1 -52 7909 7246 34 0 0 0 chr9 6404646 6404680 -135866764 + AT_rich Low_complexity Low_complexity 1 34 0 320 356 27 20 chr9 6404983 6405132 -135866312 + MIR3 SINE MIR 38 187 -21 25 0 0 0 chr9 6408131 6408156 -135863288 + AT_rich Low_complexity Low_complexity 1 25 0 513 136 0 0 chr9 6408401 6408489 -135862955 - L1MB7 LINE L1 -217 5967 5880 573 198 190 12 chr9 6408504 6408761 -135862683 - L1MB7 LINE L1 -700 5484 5188 3338 206 154 29 chr9 6408970 6410171 -135861273 - L1MB7 LINE L1 -944 5202 3834 1663 200 7 0 chr9 6410171 6410461 -135860983 - AluJb SINE Alu -20 292 1 3338 206 154 29 chr9 6410461 6410518 -135860926 - L1MB7 LINE L1 -2312 3834 3786 11145 124 30 128 chr9 6410678 6413518 -135857926 + L1PA7 LINE L1 12 2570 -3576 8225 70 15 5 chr9 6413521 6415431 -135856013 + L1PA7 LINE L1 4217 6150 -4 229 308 162 0 chr9 6419257 6419374 -135852070 + MIR SINE MIR 20 155 -107 419 293 74 36 chr9 6420527 6421002 -135850442 + HAL1b LINE L1 153 645 -703 437 202 48 0 chr9 6421026 6421110 -135850334 - AluJb SINE Alu -22 290 203 226 171 0 0 chr9 6421137 6421178 -135850266 - Alu SINE Alu -33 269 229 1379 186 27 4 chr9 6421186 6421449 -135849995 - AluJo SINE Alu -43 269 1 829 98 0 0 chr9 6421641 6421753 -135849691 - AluSg/x SINE Alu -2 310 199 498 329 69 23 chr9 6421800 6422309 -135849135 + L1MDa LINE L1 2417 2953 -3587 582 176 30 30 chr9 6422328 6422459 -135848985 + L1ME2 LINE L1 6021 6151 -13 216 67 0 0 chr9 6422643 6422673 -135848771 + (GA)n Simple_repeat Simple_repeat 2 31 0 1740 174 46 17 chr9 6422678 6423029 -135848415 - MLT2D LTR ERVL -53 361 1 262 312 136 30 chr9 6423236 6423435 -135848009 - L2 LINE L2 -8 3305 3086 518 198 236 0 chr9 6424179 6424361 -135847083 + L1MCa LINE L1 2099 2323 -4103 * 7872 211 48 26 chr9 6424352 6426969 -135844475 + L1MC2 LINE L1 1840 4540 -1886 2362 95 7 0 chr9 6426969 6427275 -135844169 + AluSg SINE Alu 1 308 -2 7872 211 48 26 chr9 6427275 6427845 -135843599 + L1MC2 LINE L1 4540 5096 -1330 2431 169 122 19 chr9 6427833 6428519 -135842925 + L1MC2 LINE L1 5849 6610 -14 * 1507 151 77 49 chr9 6428519 6428804 -135842640 - AluJo SINE Alu -19 293 1 2431 169 122 19 chr9 6428804 6428816 -135842628 + L1MC2 LINE L1 6610 6619 -5 2454 84 0 0 chr9 6428839 6429138 -135842306 + AluSg SINE Alu 1 299 -11 2347 80 3 0 chr9 6429688 6429987 -135841457 - AluSp SINE Alu -13 300 1 717 243 109 0 chr9 6431025 6431227 -135840217 + MER58A DNA MER1_type 1 224 0 2208 116 0 3 chr9 6431864 6432165 -135839279 + AluSx SINE Alu 1 300 -12 2094 137 0 3 chr9 6433857 6434156 -135837288 - AluSx SINE Alu -13 299 2 769 119 0 0 chr9 6434397 6434533 -135836911 + AluSg/x SINE Alu 176 311 0 1785 161 0 39 chr9 6437900 6438211 -135833233 - AluJb SINE Alu -13 299 1 2177 128 0 0 chr9 6438935 6439239 -135832205 + AluSx SINE Alu 1 304 -8 735 148 17 9 chr9 6439477 6439592 -135831852 - FLAM_C SINE Alu -25 118 3 1696 137 76 4 chr9 6440208 6440490 -135830954 - AluJb SINE Alu 0 301 1 2378 48 10 0 chr9 6440501 6440791 -135830653 - AluY SINE Alu -18 293 1 517 265 53 20 chr9 6441024 6441175 -135830269 - L2 LINE L2 0 3313 3158 25 0 0 0 chr9 6442427 6442452 -135828992 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr9 6442803 6442844 -135828600 + A-rich Low_complexity Low_complexity 1 41 0 296 304 78 48 chr9 6442954 6443184 -135828260 + L2 LINE L2 1739 1975 -1339 273 280 160 10 chr9 6443147 6443247 -135828197 - L2 LINE L2 -3 3269 3155 * 247 246 90 0 chr9 6444856 6444924 -135826520 - L1ME LINE L1 -213 5908 5848 1397 140 35 0 chr9 6444924 6445152 -135826292 - MER46A DNA MER2_type 0 236 1 247 246 90 0 chr9 6445152 6445205 -135826239 - L1ME LINE L1 -273 5848 5776 23 33 0 0 chr9 6445218 6445248 -135826196 + AT_rich Low_complexity Low_complexity 1 30 0 226 240 13 0 chr9 6445321 6445396 -135826048 + (TA)n Simple_repeat Simple_repeat 1 76 0 599 290 34 65 chr9 6445507 6445831 -135825613 + MLT1I LTR MaLR 93 406 -3 1881 132 44 14 chr9 6445932 6446227 -135825217 + AluSx SINE Alu 1 304 -8 302 234 0 0 chr9 6446252 6446329 -135825115 + L1MCc LINE L1 1386 1462 -4961 301 273 47 53 chr9 6446350 6446500 -135824944 + L1MCc LINE L1 1675 1823 -5108 288 306 16 15 chr9 6446527 6446680 -135824764 + L1MCc LINE L1 1816 2069 -4862 1763 219 91 34 chr9 6446702 6447327 -135824117 + L1MC4 LINE L1 6785 7445 -597 23 78 0 0 chr9 6447385 6447436 -135824008 + AT_rich Low_complexity Low_complexity 1 51 0 332 258 126 0 chr9 6447653 6447820 -135823624 + L1MC4 LINE L1 7634 7821 -221 413 218 78 62 chr9 6447837 6448016 -135823428 - L1M4 LINE L1 -2243 3903 3722 646 235 143 0 chr9 6448037 6448254 -135823190 + L1ME4a LINE L1 5585 5832 -338 268 328 9 69 chr9 6448254 6448370 -135823074 - MIR SINE MIR -130 132 24 2335 90 0 0 chr9 6448370 6448669 -135822775 - AluY SINE Alu -12 299 1 2385 72 0 7 chr9 6448669 6448961 -135822483 - AluSx SINE Alu -22 290 1 376 221 127 70 chr9 6449333 6449491 -135821953 - L2 LINE L2 -1317 1997 1831 622 179 19 0 chr9 6449539 6449645 -135821799 + FRAM SINE Alu 53 160 -16 565 265 99 0 chr9 6449651 6449832 -135821612 - L2 LINE L2 -1502 1812 1614 1882 179 10 0 chr9 6449905 6450212 -135821232 + AluJo SINE Alu 1 310 -2 374 288 167 1 chr9 6450236 6450415 -135821029 - L1MC/D LINE L1 -460 5661 5459 2220 189 42 14 chr9 6450476 6450751 -135820693 + L1MB8 LINE L1 5577 5874 -304 2490 126 22 38 chr9 6450751 6451203 -135820241 + MER65A LTR ERV1 1 445 0 2220 189 42 14 chr9 6451203 6451424 -135820020 + L1MB8 LINE L1 5874 6087 -91 2141 110 3 0 chr9 6451489 6451780 -135819664 + AluSx SINE Alu 1 292 -20 262 238 10 50 chr9 6451838 6451939 -135819505 + L1ME4a LINE L1 5936 6032 -89 1825 172 7 0 chr9 6453442 6453738 -135817706 + AluJb SINE Alu 1 298 -14 1234 29 0 7 chr9 6454279 6454419 -135817025 + MER85 DNA T2_type 1 139 0 1692 169 37 10 chr9 6454473 6454769 -135816675 + AluJb SINE Alu 1 304 -8 983 237 47 0 chr9 6454958 6455190 -135816254 + MIR SINE MIR 12 254 -8 856 137 0 0 chr9 6455762 6455879 -135815565 + AluJo/FLAM SINE Alu 1 117 -185 312 159 111 0 chr9 6455879 6455942 -135815502 - AluSp/q SINE Alu -2 301 232 1383 209 72 70 chr9 6456043 6456444 -135815000 - LTR40a LTR ERVL -95 424 23 867 286 133 29 chr9 6456498 6456875 -135814569 + LTR33 LTR ERVL 99 514 -7 341 284 54 27 chr9 6457021 6457169 -135814275 + L1M4 LINE L1 3792 3943 -2203 373 256 171 18 chr9 6457314 6457478 -135813966 + MER5A DNA MER1_type 1 189 0 898 98 81 0 chr9 6457492 6457615 -135813829 - FLAM_C SINE Alu 0 133 1 310 257 57 74 chr9 6457645 6457820 -135813624 - HAL1 LINE L1 -10 2497 2326 1853 96 146 0 chr9 6457977 6458238 -135813206 - AluSq SINE Alu -4 299 1 2376 74 0 36 chr9 6458319 6458628 -135812816 + AluY SINE Alu 1 298 -13 1718 120 32 0 chr9 6458724 6458974 -135812470 - AluSc SINE Alu -16 293 36 921 195 16 16 chr9 6459278 6459463 -135811981 - AluJo SINE Alu -7 305 121 27 49 0 0 chr9 6459799 6459840 -135811604 + AT_rich Low_complexity Low_complexity 1 41 0 2196 113 0 31 chr9 6460051 6460369 -135811075 + AluSx SINE Alu 3 310 -2 7172 187 132 8 chr9 6460495 6461905 -135809539 + L1PA13 LINE L1 1 1585 -5202 5868 107 53 2 chr9 6461908 6463205 -135808239 + L1PA13 LINE L1 4817 6163 0 1042 135 53 6 chr9 6464016 6464186 -135807258 - L1PB3 LINE L1 -1 6869 6692 12613 235 62 65 chr9 6464434 6465841 -135805603 - L1PB3 LINE L1 -164 6706 5296 2104 134 3 3 chr9 6465841 6466148 -135805296 - AluSq SINE Alu -6 307 1 12613 235 62 65 chr9 6466148 6467468 -135803976 - L1PB3 LINE L1 -1574 5296 3973 2006 133 0 44 chr9 6467468 6467785 -135803659 - AluSx SINE Alu -9 303 1 12613 235 62 65 chr9 6467785 6470189 -135801255 - L1PB3 LINE L1 -2897 3973 2682 2193 122 20 0 chr9 6470189 6470493 -135800951 - AluSx SINE Alu -2 310 1 12613 235 62 65 chr9 6470493 6473165 -135798279 - L1PB3 LINE L1 -4188 2682 3 255 384 58 0 chr9 6473645 6473731 -135797713 - MIR SINE MIR -90 118 28 1683 87 4 13 chr9 6473905 6474136 -135797308 + AluSq SINE Alu 44 272 -41 745 16 63 0 chr9 6474238 6474343 -135797101 - L1P1 LINE L1 -670 5484 5374 271 0 51 0 chr9 6474682 6474721 -135796723 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 7584 22 0 0 chr9 6474725 6475583 -135795861 - L1PA3 LINE L1 0 6155 5298 * 41614 71 6 2 chr9 6475578 6480946 -135790498 - L1P LINE L1 -756 5390 5 574 267 37 19 chr9 6482984 6483145 -135788299 - MIR SINE MIR -93 169 6 359 262 19 19 chr9 6483423 6483530 -135787914 - MIR SINE MIR -26 236 130 3393 60 2 10 chr9 6484415 6484830 -135786614 + L1PA5 LINE L1 5743 6154 0 379 231 161 0 chr9 6485071 6485201 -135786243 - L1MC5 LINE L1 -48 7913 7763 602 180 9 0 chr9 6485907 6486018 -135785426 - Charlie4 DNA MER1_type -34 1927 1816 391 298 7 64 chr9 6486706 6486847 -135784597 + MLT1I LTR MaLR 22 154 -255 198 167 0 0 chr9 6486849 6486885 -135784559 + CT-rich Low_complexity Low_complexity 2 37 0 728 171 0 0 chr9 6486895 6487000 -135784444 - FLAM_C SINE Alu -21 122 18 739 266 41 18 chr9 6487037 6487259 -135784185 + MLT1I LTR MaLR 184 450 0 315 235 12 12 chr9 6487306 6487387 -135784057 - MIR SINE MIR -110 152 72 180 225 25 0 chr9 6487739 6487779 -135783665 + MER5B DNA MER1_type 13 53 -125 237 311 76 98 chr9 6487989 6488266 -135783178 + L2 LINE L2 2924 3194 -78 21 0 0 0 chr9 6488294 6488315 -135783129 + GC_rich Low_complexity Low_complexity 1 21 0 546 242 95 38 chr9 6488688 6488899 -135782545 - L2 LINE L2 0 3313 3091 180 0 0 0 chr9 6489208 6489228 -135782216 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1101 216 24 111 chr9 6489236 6489607 -135781837 + MSTD LTR MaLR 1 339 -57 514 147 10 10 chr9 6489607 6489709 -135781735 + CT-rich Low_complexity Low_complexity 3 104 0 5204 91 11 14 chr9 6489722 6490418 -135781026 - L1PA13 LINE L1 -14 6149 5456 507 100 0 0 chr9 6490419 6490489 -135780955 + MSTD LTR MaLR 388 457 0 1737 157 0 35 chr9 6490637 6490923 -135780521 - AluJo SINE Alu -36 276 1 365 280 107 33 chr9 6491504 6491654 -135779790 + LTR16C LTR ERVL 322 482 -9 1318 81 27 27 chr9 6492450 6492635 -135778809 + AluY SINE Alu 1 185 -126 1639 170 3 39 chr9 6493247 6493559 -135777885 + AluJo SINE Alu 1 301 -11 2032 95 4 0 chr9 6493572 6493835 -135777609 - AluSq SINE Alu -6 307 44 1616 267 42 56 chr9 6494065 6495121 -135776323 - HERVI LTR ERV1 -6646 1139 23 3738 110 12 2 chr9 6495147 6495655 -135775789 - LTR10D LTR ERV1 0 513 1 220 313 163 0 chr9 6495932 6496079 -135775365 - L2 LINE L2 -1226 2088 1918 235 248 86 68 chr9 6496417 6496470 -135774974 - MER103 DNA DNA -37 129 78 2224 118 0 0 chr9 6496470 6496774 -135774670 - AluSx SINE Alu -8 304 1 235 248 86 68 chr9 6496774 6496837 -135774607 - MER103 DNA DNA -88 78 11 2335 93 3 0 chr9 6497454 6497756 -135773688 - AluY SINE Alu -8 303 1 2058 105 3 37 chr9 6497986 6498316 -135773128 - AluY SINE Alu 0 320 1 1853 96 146 0 chr9 6498397 6498658 -135772786 + AluSq SINE Alu 1 299 -4 310 257 57 74 chr9 6498815 6498990 -135772454 + HAL1 LINE L1 2326 2497 -10 898 98 81 0 chr9 6499020 6499143 -135772301 + FLAM_C SINE Alu 1 133 0 373 256 171 18 chr9 6499157 6499321 -135772123 - MER5A DNA MER1_type 0 189 1 23 68 0 0 chr9 6499370 6499414 -135772030 + AT_rich Low_complexity Low_complexity 1 44 0 341 284 54 27 chr9 6499466 6499614 -135771830 - L1M4 LINE L1 -2203 3943 3792 867 286 133 29 chr9 6499760 6500137 -135771307 - LTR33 LTR ERVL -7 514 99 1482 208 72 67 chr9 6500191 6500610 -135770834 + LTR40a LTR ERVL 23 443 -76 829 219 16 37 chr9 6500731 6500758 -135770686 - L1P LINE L1 -2652 3494 3468 2061 86 23 36 chr9 6500758 6501061 -135770383 + AluY SINE Alu 1 299 -12 829 219 16 37 chr9 6501061 6501275 -135770169 - L1P LINE L1 -2678 3468 3258 345 202 218 24 chr9 6501276 6501400 -135770044 + LTR50 LTR ERVL 586 733 -62 216 266 16 0 chr9 6501446 6501510 -135769934 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2273 112 3 0 chr9 6501541 6501845 -135769599 - AluSc SINE Alu -4 305 1 1139 213 46 59 chr9 6502042 6502347 -135769097 - LTR8A LTR ERV1 0 727 427 316 271 81 27 chr9 6503386 6503589 -135767855 + L1ME4a LINE L1 5878 6095 -26 2236 105 10 3 chr9 6503589 6503894 -135767550 - AluSq SINE Alu -6 307 1 316 271 81 27 chr9 6503894 6503911 -135767533 + L1ME4a LINE L1 6095 6110 -11 428 168 193 0 chr9 6504204 6504323 -135767121 + MIR SINE MIR 121 262 0 2149 55 0 8 chr9 6505947 6506235 -135765209 + AluY SINE Alu 27 312 0 7241 215 35 11 chr9 6506246 6506672 -135764772 + L1 LINE L1 3511 3925 -2221 2236 139 39 28 chr9 6506672 6507032 -135764412 - THE1B LTR MaLR 0 364 1 7241 215 35 11 chr9 6507032 6508242 -135763202 + L1 LINE L1 3925 5187 -959 4724 128 44 33 chr9 6508243 6509056 -135762388 + L1PA16 LINE L1 5340 6161 -5 400 163 12 5 chr9 6509416 6509673 -135761771 + AluJb SINE Alu 17 307 -5 795 209 12 31 chr9 6509772 6509957 -135761487 - AluJo SINE Alu 0 312 127 926 223 9 38 chr9 6509991 6510202 -135761242 - MER3 DNA MER1_type 0 209 5 622 241 28 47 chr9 6510203 6510415 -135761029 + L1MC5 LINE L1 7706 7913 -48 2296 166 21 23 chr9 6510568 6511013 -135760431 - MSTB1 LTR MaLR 0 397 1 385 286 0 0 chr9 6511096 6511194 -135760250 - L1MC4a LINE L1 -1965 5843 5746 679 325 94 22 chr9 6511253 6511656 -135759788 - L2 LINE L2 -702 2612 2181 221 125 0 42 chr9 6512478 6512526 -135758918 + (TTTTTA)n Simple_repeat Simple_repeat 1 46 0 360 344 51 28 chr9 6512883 6513098 -135758346 - MLT1J LTR MaLR -291 220 1 534 306 124 6 chr9 6513100 6513414 -135758030 + HAL1 LINE L1 1726 2076 -431 3774 106 10 8 chr9 6513419 6513931 -135757513 - LTR10D LTR ERV1 0 513 1 37184 187 12 21 chr9 6513947 6520635 -135750809 - HERVI LTR ERV1 -16 7769 1144 1630 264 56 55 chr9 6520965 6522037 -135749407 - HERVI LTR ERV1 -6614 1171 23 3742 110 12 2 chr9 6522063 6522571 -135748873 - LTR10D LTR ERV1 0 513 1 220 313 163 0 chr9 6522848 6522995 -135748449 - L2 LINE L2 -1226 2088 1918 235 248 86 68 chr9 6523333 6523386 -135748058 - MER103 DNA DNA -37 129 78 2224 118 0 0 chr9 6523386 6523690 -135747754 - AluSx SINE Alu -8 304 1 235 248 86 68 chr9 6523690 6523753 -135747691 - MER103 DNA DNA -88 78 11 2283 103 3 0 chr9 6524370 6524672 -135746772 - AluY SINE Alu -8 303 1 1948 108 7 51 chr9 6524902 6525234 -135746210 - AluSg SINE Alu 0 319 1 430 186 150 35 chr9 6525529 6525642 -135745802 + FLAM_C SINE Alu 1 126 -7 1317 177 45 78 chr9 6526523 6526599 -135744845 - LTR37A LTR ERV1 0 426 349 1739 167 38 0 chr9 6526599 6526887 -135744557 - AluJo SINE Alu -13 299 1 1317 177 45 78 chr9 6526887 6527233 -135744211 - LTR37A LTR ERV1 -77 349 18 4104 126 76 35 chr9 6527484 6528233 -135743211 - LTR1 LTR ERV1 0 785 6 2121 131 0 0 chr9 6529038 6529344 -135742100 + AluSq SINE Alu 1 306 0 258 269 106 14 chr9 6529351 6529492 -135741952 - L1ME4a LINE L1 -1 6120 5967 1080 201 44 97 chr9 6529583 6529996 -135741448 + L1M4 LINE L1 4924 5314 -832 331 183 73 12 chr9 6530222 6530304 -135741140 - MLT1H LTR MaLR 0 549 463 1169 191 9 23 chr9 6530604 6530824 -135740620 + MER20 DNA MER1_type 3 219 0 308 253 48 0 chr9 6530831 6530914 -135740530 - MLT1H LTR MaLR -462 87 1 1971 138 13 7 chr9 6531416 6531720 -135739724 + AluJb SINE Alu 1 306 -6 1040 165 41 28 chr9 6531817 6532035 -135739409 + AluJo SINE Alu 87 307 -5 534 241 13 57 chr9 6532386 6532544 -135738900 - LTR67 LTR ERVL -14 543 393 437 295 36 36 chr9 6532687 6532853 -135738591 - LTR67 LTR ERVL -369 188 23 1347 265 23 8 chr9 6533500 6533851 -135737593 + LTR16A LTR ERVL 89 444 -6 502 319 101 4 chr9 6533866 6534123 -135737321 - MLT1J LTR MaLR -2 509 228 1051 140 22 22 chr9 6534381 6534559 -135736885 - LTR8A LTR ERV1 -317 410 233 925 174 11 17 chr9 6534560 6534738 -135736706 + LTR28 LTR ERV1 2 178 -842 261 132 0 0 chr9 6534715 6534753 -135736691 + MER61B LTR ERV1 102 139 -286 * 1173 167 13 107 chr9 6534835 6535134 -135736310 + LTR27 LTR ERV1 364 634 -2 972 179 19 61 chr9 6535139 6535351 -135736093 - LTR8A LTR ERV1 -491 236 34 1665 40 0 5 chr9 6536478 6536678 -135734766 + MLT2A1 LTR ERVL 2 200 -244 41354 75 10 5 chr9 6536679 6542417 -135729027 + HERVL-A1 LTR ERVL 33 5756 -8 3475 76 32 5 chr9 6542418 6542809 -135728635 + MLT2A1 LTR ERVL 1 407 -37 225 0 0 0 chr9 6542809 6542834 -135728610 + (TA)n Simple_repeat Simple_repeat 1 25 0 3475 76 32 5 chr9 6542834 6542874 -135728570 + MLT2A1 LTR ERVL 407 444 0 27 0 0 0 chr9 6542990 6543017 -135728427 + AT_rich Low_complexity Low_complexity 1 27 0 432 271 160 27 chr9 6543049 6543237 -135728207 + MIR SINE MIR 48 260 -2 1158 218 40 0 chr9 6543488 6543713 -135727731 + L1PB4 LINE L1 5921 6154 -2 1187 197 165 76 chr9 6543998 6544093 -135727351 - LTR50 LTR ERVL -8 787 702 192 40 0 0 chr9 6544093 6544118 -135727326 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1187 197 165 76 chr9 6544118 6544653 -135726791 - LTR50 LTR ERVL -93 702 11 24 53 0 0 chr9 6545092 6545130 -135726314 + AT_rich Low_complexity Low_complexity 1 38 0 2403 90 0 6 chr9 6545131 6545442 -135726002 - AluY SINE Alu -2 309 1 1492 163 63 11 chr9 6545444 6545714 -135725730 - AluJo SINE Alu -26 286 3 581 309 82 0 chr9 6545768 6545988 -135725456 - MIR SINE MIR -2 260 23 422 114 0 29 chr9 6547292 6547362 -135724082 + L1PB4 LINE L1 6087 6154 -2 210 167 0 0 chr9 6548293 6548329 -135723115 - MER91B DNA MER1_type -142 48 13 424 149 7 41 chr9 6548487 6548623 -135722821 + MER53 DNA DNA 3 189 0 1905 190 36 8 chr9 6549209 6549655 -135721789 + MER89 LTR ERV1 1 559 0 431 367 25 17 chr9 6550014 6550251 -135721193 + MIR SINE MIR 24 262 0 7985 166 135 15 chr9 6551282 6552849 -135718595 + MER52A LTR ERV1 1 1755 0 2181 84 28 0 chr9 6553021 6553306 -135718138 - L1PB1 LINE L1 -1 6150 5858 2169 100 4 4 chr9 6553310 6553614 -135717830 + AluSq SINE Alu 5 308 0 239 167 0 0 chr9 6553715 6553751 -135717693 - L1PB1 LINE L1 -297 5854 5819 2470 84 0 3 chr9 6553751 6554061 -135717383 - AluY SINE Alu -2 309 1 2331 131 8 11 chr9 6554087 6554446 -135716998 - THE1B LTR MaLR -1 363 6 1807 256 43 4 chr9 6554470 6554963 -135716481 - L1M4 LINE L1 -1018 5128 4617 2155 123 0 0 chr9 6554974 6555266 -135716178 - AluSg SINE Alu -18 292 1 344 296 20 29 chr9 6555646 6555802 -135715642 - MIR SINE MIR -36 172 21 1939 132 40 0 chr9 6556806 6557102 -135714342 + AluSx SINE Alu 5 312 0 1376 171 38 3 chr9 6557285 6557577 -135713867 - L1MB7 LINE L1 0 6184 5883 233 195 12 24 chr9 6557882 6557964 -135713480 + (TAA)n Simple_repeat Simple_repeat 1 81 0 285 267 23 0 chr9 6558580 6558666 -135712778 - MER69 DNA AcHobo -1727 799 712 27 0 0 0 chr9 6560077 6560104 -135711340 + AT_rich Low_complexity Low_complexity 1 27 0 563 196 34 121 chr9 6560114 6560316 -135711128 + L1MC5 LINE L1 7452 7601 -360 1831 154 21 7 chr9 6560316 6560602 -135710842 + AluJo SINE Alu 1 290 -22 563 196 34 121 chr9 6560602 6560813 -135710631 + L1MC5 LINE L1 7601 7829 -132 195 42 0 0 chr9 6562705 6562729 -135708715 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 3915 155 39 33 chr9 6562738 6563144 -135708300 + L1MB4 LINE L1 5174 5576 -604 2222 100 0 3 chr9 6563144 6563435 -135708009 + AluSc SINE Alu 1 290 -19 3915 155 39 33 chr9 6563435 6563762 -135707682 + L1MB4 LINE L1 5576 5926 -254 2427 173 7 9 chr9 6563762 6564189 -135707255 - MSTB LTR MaLR 0 426 1 3915 155 39 33 chr9 6564189 6564373 -135707071 + L1MB4 LINE L1 5926 6107 -73 512 325 75 9 chr9 6564450 6564662 -135706782 - MIR SINE MIR -31 231 6 25 0 0 0 chr9 6565082 6565107 -135706337 + AT_rich Low_complexity Low_complexity 1 25 0 225 69 0 0 chr9 6565964 6565993 -135705451 + U2 snRNA snRNA 1 29 -159 1018 252 35 22 chr9 6566021 6566422 -135705022 + L1MC5 LINE L1 6968 7373 -588 369 284 29 54 chr9 6566474 6566678 -135704766 + L1ME3A LINE L1 5963 6161 -9 2502 174 72 30 chr9 6567012 6567024 -135704420 + L1MB5 LINE L1 5566 5576 -598 1679 118 4 12 chr9 6567024 6567269 -135704175 + AluSx SINE Alu 38 280 -32 297 0 0 0 chr9 6567270 6567303 -135704141 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2502 174 72 30 chr9 6567303 6567856 -135703588 + L1MB5 LINE L1 5575 6157 -17 4628 170 6 20 chr9 6567876 6568850 -135702594 + L1P LINE L1 3037 3996 -2150 604 284 83 31 chr9 6569179 6569408 -135702036 - MIR SINE MIR -21 241 1 198 247 62 49 chr9 6569408 6569441 -135702003 - MER5A DNA MER1_type -148 41 8 600 226 104 28 chr9 6570135 6570347 -135701097 + MLT1H LTR MaLR 3 230 -319 323 163 24 122 chr9 6570429 6570552 -135700892 + MLT1H LTR MaLR 426 536 -13 187 369 131 8 chr9 6570963 6571085 -135700359 + L2 LINE L2 3136 3272 0 249 33 0 0 chr9 6571608 6571638 -135699806 + (TG)n Simple_repeat Simple_repeat 1 30 0 1742 149 3 11 chr9 6571649 6571931 -135699513 - AluJb SINE Alu -32 280 1 197 345 9 52 chr9 6572958 6573074 -135698370 + L3 LINE CR1 1458 1568 -9 40151 36 26 2 chr9 6573232 6579235 -135692209 + L1PA2 LINE L1 4 6155 0 669 239 25 50 chr9 6579501 6579702 -135691742 - MIR SINE MIR -2 260 65 203 152 0 0 chr9 6580927 6580960 -135690484 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1986 130 52 30 chr9 6581061 6581391 -135690053 - MER1B DNA MER1_type 0 337 1 269 100 0 0 chr9 6581466 6581506 -135689938 - MLT1I LTR MaLR -272 137 98 317 225 130 0 chr9 6581515 6581653 -135689791 + L1MEc LINE L1 1599 1754 -4642 25 0 0 0 chr9 6581780 6581805 -135689639 + AT_rich Low_complexity Low_complexity 1 25 0 306 197 29 117 chr9 6581871 6582008 -135689436 + L1M4 LINE L1 4562 4686 -1460 22 70 0 0 chr9 6582233 6582276 -135689168 + AT_rich Low_complexity Low_complexity 1 43 0 439 183 83 33 chr9 6582314 6582434 -135689010 - L1MC5 LINE L1 -48 7913 7788 8465 152 29 4 chr9 6582434 6583896 -135687548 - ERVL-B1 LTR ERVL -2210 3554 2057 2953 170 68 47 chr9 6583923 6584946 -135686498 - MER21A LTR ERV1 -19 912 26 9970 187 43 18 chr9 6584992 6585746 -135685698 - ERVL-B1 LTR ERVL -3711 2053 1320 1191 210 78 49 chr9 6585746 6586131 -135685313 + MSTD LTR MaLR 1 396 0 9970 187 43 18 chr9 6586131 6586760 -135684684 - ERVL-B1 LTR ERVL -4444 1320 709 2459 131 31 5 chr9 6586760 6587148 -135684296 + MER48 LTR ERV1 1 398 0 9970 187 43 18 chr9 6587148 6587764 -135683680 - ERVL-B1 LTR ERVL -5055 709 2 1699 181 151 54 chr9 6587771 6588235 -135683209 - MLT2B1 LTR ERVL -6 514 6 986 103 19 0 chr9 6588235 6588391 -135683053 + L1MB8 LINE L1 5737 5895 -283 320 305 59 0 chr9 6588623 6588741 -135682703 + L2 LINE L2 1879 2003 -1311 225 344 84 7 chr9 6588774 6588928 -135682516 - MLT1L LTR MaLR -67 548 383 10762 190 30 36 chr9 6588987 6590639 -135680805 + L1MB3 LINE L1 266 1926 -4456 2758 112 57 69 chr9 6590639 6591164 -135680280 - LTR44 LTR ERV1 0 519 1 2154 138 0 0 chr9 6591171 6591482 -135679962 - AluSx SINE Alu -1 311 1 10762 190 30 36 chr9 6591482 6592107 -135679337 + L1MB3 LINE L1 1932 2559 -3823 1935 149 7 3 chr9 6592107 6592396 -135679048 - AluJb SINE Alu -20 292 3 10762 190 30 36 chr9 6592396 6593118 -135678326 + L1MB3 LINE L1 2559 3284 -3098 2023 165 7 0 chr9 6593118 6593427 -135678017 + AluJb SINE Alu 1 311 -1 10762 190 30 36 chr9 6593427 6595611 -135675833 + L1MB3 LINE L1 3284 5424 -958 1746 170 0 33 chr9 6595740 6595897 -135675547 - AluJo SINE Alu -22 290 146 243 0 0 0 chr9 6595897 6595924 -135675520 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 1746 170 0 33 chr9 6595924 6596066 -135675378 - AluJo SINE Alu -166 146 1 4250 165 27 40 chr9 6596535 6597497 -135673947 + L1MB3 LINE L1 5424 6374 -45 2293 98 0 10 chr9 6597497 6597802 -135673642 + AluSx SINE Alu 1 302 -10 4250 165 27 40 chr9 6597802 6597846 -135673598 + L1MB3 LINE L1 6374 6417 -2 553 264 41 86 chr9 6598018 6598598 -135672846 - L1MEd LINE L1 -4871 1248 695 180 152 0 0 chr9 6598681 6598714 -135672730 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 385 336 69 83 chr9 6599127 6599622 -135671822 + L2 LINE L2 2589 3073 -199 2212 123 3 7 chr9 6599622 6599931 -135671513 - AluSx SINE Alu -4 308 1 385 336 69 83 chr9 6599931 6600129 -135671315 + L2 LINE L2 3073 3272 0 207 200 0 0 chr9 6600545 6600580 -135670864 + (TG)n Simple_repeat Simple_repeat 2 36 0 281 211 0 0 chr9 6600792 6600863 -135670581 - L1ME LINE L1 -303 5818 5748 831 240 159 0 chr9 6600867 6601075 -135670369 - MIR SINE MIR -21 241 1 636 280 13 0 chr9 6601166 6601316 -135670128 + MIR SINE MIR 15 166 -96 315 49 0 0 chr9 6601433 6601474 -135669970 + (A)n Simple_repeat Simple_repeat 1 41 0 253 234 106 0 chr9 6601905 6601999 -135669445 - MIR SINE MIR 0 262 159 216 0 0 0 chr9 6602038 6602062 -135669382 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 347 198 242 0 chr9 6602064 6602155 -135669289 - FLAM_A SINE Alu -17 116 4 243 273 26 39 chr9 6602155 6602232 -135669212 - MIR SINE MIR -145 117 42 211 262 0 0 chr9 6602298 6602340 -135669104 - MIR3 SINE MIR -17 191 150 309 213 12 12 chr9 6602736 6602816 -135668628 - MER116 DNA Mariner 0 80 1 1153 160 0 55 chr9 6604439 6604482 -135666962 + AluJo SINE Alu 91 135 -177 2556 43 0 3 chr9 6604482 6604782 -135666662 + AluY SINE Alu 1 299 -12 1153 160 0 55 chr9 6604782 6604957 -135666487 + AluJo SINE Alu 135 297 -15 654 242 0 0 chr9 6605159 6605287 -135666157 + FLAM_A SINE Alu 3 130 -3 405 307 130 31 chr9 6606638 6606957 -135664487 + HAL1b LINE L1 123 379 -969 350 213 36 169 chr9 6606967 6607192 -135664252 - MLT1L LTR MaLR 0 615 421 301 308 119 6 chr9 6607327 6607486 -135663958 + MLT1J LTR MaLR 2 178 -333 985 200 60 113 chr9 6607495 6607865 -135663579 + MLT2D LTR ERVL 1 350 -64 211 177 32 0 chr9 6607881 6607943 -135663501 + (TA)n Simple_repeat Simple_repeat 2 65 0 278 206 151 0 chr9 6608062 6608135 -135663309 + MLT1L LTR MaLR 311 394 -221 509 305 86 12 chr9 6608315 6608571 -135662873 - MLT1L LTR MaLR -340 275 1 2481 125 24 5 chr9 6609088 6609505 -135661939 - LTR24C LTR ERV1 -210 425 1 726 364 21 9 chr9 6609703 6610137 -135661307 + L1M3a LINE L1 14 452 -5503 15989 32 1 1 chr9 6610961 6613009 -135658435 + L1P LINE L1 1547 3595 -2551 957 166 67 46 chr9 6613901 6613970 -135657474 + L1MA8 LINE L1 6002 6068 -223 2514 66 3 0 chr9 6613970 6614272 -135657172 + AluY SINE Alu 1 303 -8 957 166 67 46 chr9 6614272 6614428 -135657016 + L1MA8 LINE L1 6068 6237 -54 267 31 0 0 chr9 6614428 6614460 -135656984 + (TA)n Simple_repeat Simple_repeat 1 32 0 957 166 67 46 chr9 6614460 6614517 -135656927 + L1MA8 LINE L1 6237 6291 0 465 356 56 0 chr9 6614901 6615081 -135656363 + L2 LINE L2 2811 3000 -313 1757 48 5 0 chr9 6615095 6615301 -135656143 - AluY SINE Alu -13 298 92 336 322 59 8 chr9 6615423 6615541 -135655903 + MIR3 SINE MIR 10 133 -75 2293 105 7 0 chr9 6615901 6616207 -135655237 + AluSp SINE Alu 1 308 -5 366 183 0 0 chr9 6616394 6616465 -135654979 + (CA)n Simple_repeat Simple_repeat 2 72 0 194 259 65 111 chr9 6616541 6616649 -135654795 + MER5A DNA MER1_type 65 167 -22 283 222 43 103 chr9 6616736 6616853 -135654591 + MIR SINE MIR 71 180 -82 304 204 46 125 chr9 6617063 6617215 -135654229 - MER112 DNA MER1_type -1 259 120 2533 168 95 6 chr9 6617239 6617744 -135653700 - MER44D DNA MER2_type 0 605 1 463 138 38 0 chr9 6617972 6618052 -135653392 + MER44D DNA MER2_type 575 657 -48 386 365 28 38 chr9 6618523 6618776 -135652668 - MIR SINE MIR -2 260 8 314 281 94 23 chr9 6619902 6620030 -135651414 - MIR SINE MIR -20 242 106 211 267 0 40 chr9 6620242 6620317 -135651127 - L2 LINE L2 -6 3307 3236 * 334 233 165 0 chr9 6620313 6620416 -135651028 + MIR SINE MIR 13 132 -130 1091 90 0 0 chr9 6620526 6620660 -135650784 - AluSq/x SINE Alu -179 134 1 22 0 0 0 chr9 6620783 6620805 -135650639 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr9 6622175 6622217 -135649227 + AT_rich Low_complexity Low_complexity 1 42 0 497 321 65 11 chr9 6622275 6622459 -135648985 + MIR SINE MIR 1 194 -68 1550 145 4 4 chr9 6623053 6623281 -135648163 - AluSx SINE Alu -84 228 1 1584 137 8 16 chr9 6623429 6623684 -135647760 + AluSc SINE Alu 1 253 -56 189 257 119 79 chr9 6625798 6625899 -135645545 - MIR SINE MIR -147 115 11 480 247 100 32 chr9 6626105 6626315 -135645129 - MIR SINE MIR 0 262 38 4085 241 75 21 chr9 6626458 6628083 -135643361 + L1M3f LINE L1 539 2242 -4086 2250 128 88 7 chr9 6628083 6628491 -135642953 + L1MA4 LINE L1 5849 6289 -11 477 255 101 64 chr9 6628649 6628933 -135642511 + L1M3f LINE L1 3255 3527 -2801 1793 167 10 10 chr9 6628933 6629233 -135642211 + AluJo SINE Alu 1 300 -12 236 77 26 0 chr9 6629233 6629272 -135642172 + (TA)n Simple_repeat Simple_repeat 2 41 0 477 255 101 64 chr9 6629272 6629398 -135642046 + L1M3f LINE L1 3526 3672 -2656 800 177 6 55 chr9 6629412 6629593 -135641851 + MLT1D LTR MaLR 17 188 -317 2528 165 19 39 chr9 6629593 6630108 -135641336 + MLT1D LTR MaLR 1 505 0 40618 35 23 1 chr9 6630136 6636156 -135635288 - L1PA3 LINE L1 0 6155 3 475 275 105 18 chr9 6636261 6636595 -135634849 + L1M3f LINE L1 3802 4164 -2164 592 337 102 38 chr9 6636642 6637177 -135634267 - L2 LINE L2 -2 3270 2703 365 242 25 25 chr9 6637435 6637555 -135633889 + LTR33 LTR ERVL 402 521 0 518 276 19 26 chr9 6637565 6637721 -135633723 - L2 LINE L2 -596 2718 2564 1504 173 15 11 chr9 6637729 6638130 -135633314 + MER76 LTR ERV 1 466 -222 358 164 45 0 chr9 6638174 6638241 -135633203 + MER76 LTR ERV 590 659 -29 638 312 41 54 chr9 6638242 6638684 -135632760 - L2 LINE L2 -744 2570 2135 180 250 0 0 chr9 6638817 6638853 -135632591 + L2 LINE L2 3220 3255 -17 322 119 237 0 chr9 6639223 6639282 -135632162 - THE1B LTR MaLR 0 375 303 1027 146 0 0 chr9 6639284 6639465 -135631979 + AluSg/x SINE Alu 134 314 0 219 167 0 0 chr9 6639485 6639527 -135631917 + GA-rich Low_complexity Low_complexity 4 45 0 2098 116 0 0 chr9 6639540 6639842 -135631602 - THE1B LTR MaLR -62 302 1 286 323 222 35 chr9 6640049 6640247 -135631197 + MIR SINE MIR 20 254 -8 1321 174 0 21 chr9 6641037 6641273 -135630171 + AluJo SINE Alu 70 300 -12 202 267 0 0 chr9 6641628 6641673 -135629771 + (CAG)n Simple_repeat Simple_repeat 3 47 0 628 213 90 62 chr9 6641894 6642105 -135629339 + MIR SINE MIR 40 256 -6 1591 151 7 60 chr9 6642493 6642813 -135628631 - AluJb SINE Alu 0 304 1 264 353 88 0 chr9 6643054 6643190 -135628254 - MIR3 SINE MIR -5 203 56 235 286 0 16 chr9 6643528 6643591 -135627853 - MIR SINE MIR -127 81 20 1688 148 20 67 chr9 6644029 6644435 -135627009 - L1MB8 LINE L1 -6 6172 5786 1456 173 24 0 chr9 6644438 6644733 -135626711 - L1MB8 LINE L1 -538 5646 5345 1186 277 54 12 chr9 6644740 6645242 -135626202 - L1M4c LINE L1 -4738 1646 1124 1625 256 113 35 chr9 6645246 6645780 -135625664 + L1ME LINE L1 89 580 -5500 2064 144 3 0 chr9 6645780 6646071 -135625373 + AluSx SINE Alu 1 292 -20 1625 256 113 35 chr9 6646071 6646717 -135624727 + L1ME LINE L1 580 1362 -4718 2833 6 15 3 chr9 6646740 6647068 -135624376 + L1PA3 LINE L1 5824 6155 0 183 42 0 0 chr9 6647136 6647160 -135624284 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 334 215 47 0 chr9 6647168 6647275 -135624169 + L1ME LINE L1 1403 1514 -4566 2495 191 57 78 chr9 6647887 6648593 -135622851 - LTR8 LTR ERV1 0 691 1 1939 135 49 0 chr9 6649786 6650074 -135621370 + AluSx SINE Alu 5 306 -6 283 282 18 0 chr9 6650575 6650685 -135620759 + LTR33 LTR ERVL 4 115 -406 573 238 42 0 chr9 6651098 6651241 -135620203 + MLT1D LTR MaLR 355 503 -2 1629 115 125 16 chr9 6652288 6652593 -135618851 - MER44D DNA MER2_type -1 608 1 3676 162 19 0 chr9 6653775 6654423 -135617021 + L1MB5 LINE L1 5515 6174 0 4356 213 36 30 chr9 6654455 6654843 -135616601 - L1M4 LINE L1 -649 6023 5639 1578 194 40 0 chr9 6654843 6655121 -135616323 + AluJb SINE Alu 9 297 -15 4356 213 36 30 chr9 6655121 6656100 -135615344 - L1M4 LINE L1 -1033 5639 4648 207 0 0 0 chr9 6656100 6656123 -135615321 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4356 213 36 30 chr9 6656123 6656190 -135615254 - L1M4 LINE L1 -2024 4648 4583 25554 87 7 6 chr9 6656194 6661618 -135609826 + L1PA7 LINE L1 1377 7588 -4 203 0 37 0 chr9 6661644 6661671 -135609773 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1346 245 6 14 chr9 6661679 6662026 -135609418 - L1M4 LINE L1 -2046 4598 4255 4432 235 54 43 chr9 6662029 6664025 -135607419 - L1M4 LINE L1 -4656 1990 5 476 343 78 12 chr9 6664050 6664371 -135607073 - L1MEc LINE L1 -3404 2725 2384 1529 188 18 25 chr9 6664382 6664700 -135606744 - AluJo SINE Alu 0 319 4 3041 93 32 5 chr9 6664701 6665133 -135606311 - MLT2A1 LTR ERVL 0 444 1 550 322 70 36 chr9 6665142 6665642 -135605802 - L1MEc LINE L1 -4016 2294 1778 234 0 0 0 chr9 6666544 6666570 -135604874 + (A)n Simple_repeat Simple_repeat 1 26 0 2332 64 0 3 chr9 6666701 6667010 -135604434 + AluY SINE Alu 1 308 0 612 242 80 58 chr9 6667041 6667379 -135604065 + L1MEc LINE L1 2179 2492 -3723 1199 165 5 15 chr9 6669049 6669276 -135602168 - AluJo SINE Alu 0 309 85 1967 127 0 43 chr9 6669388 6669687 -135601757 + AluSq SINE Alu 7 292 -21 3261 136 71 43 chr9 6669814 6670492 -135600952 - LTR8A LTR ERV1 -30 697 1 521 184 31 17 chr9 6671513 6671873 -135599571 + (TA)n Simple_repeat Simple_repeat 1 365 0 421 301 35 60 chr9 6672438 6672637 -135598807 + MIR SINE MIR 2 195 -67 355 240 123 68 chr9 6672706 6672852 -135598592 - MIR SINE MIR -75 187 34 228 67 0 0 chr9 6673670 6673700 -135597744 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1762 178 21 0 chr9 6673702 6673983 -135597461 - AluJb SINE Alu -25 287 1 366 284 24 95 chr9 6675835 6676046 -135595398 - L1ME3A LINE L1 -1 6169 5974 595 280 111 18 chr9 6676647 6676979 -135594465 - MLT1L LTR MaLR 0 615 253 526 195 0 70 chr9 6678330 6678458 -135592986 + MIR SINE MIR 33 151 -57 1143 209 0 30 chr9 6678647 6678877 -135592567 - AluJb SINE Alu -9 303 81 1363 294 71 30 chr9 6678878 6678930 -135592514 - L1MEd LINE L1 -4865 1254 1206 1748 168 0 25 chr9 6678930 6679245 -135592199 - AluJo SINE Alu -5 307 1 1363 294 71 30 chr9 6679245 6680202 -135591242 - L1MEd LINE L1 -4913 1206 274 841 242 11 0 chr9 6680905 6681083 -135590361 + MIR SINE MIR 79 258 -4 717 231 81 0 chr9 6681083 6681256 -135590188 + AluJo SINE Alu 120 306 -6 1800 140 39 3 chr9 6681504 6681790 -135589654 + AluJo SINE Alu 1 296 -16 260 245 0 0 chr9 6682107 6682160 -135589284 - MIR SINE MIR -59 149 97 399 339 133 33 chr9 6682634 6683032 -135588412 - L2 LINE L2 -16 3256 2819 292 311 152 7 chr9 6683790 6683941 -135587503 + MIR SINE MIR 36 208 -54 431 358 33 30 chr9 6683975 6684307 -135587137 + L2 LINE L2 2559 2891 -423 4747 222 93 18 chr9 6684443 6685526 -135585918 - L1M4 LINE L1 -1825 4321 3321 231 88 0 0 chr9 6685526 6685560 -135585884 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4747 222 93 18 chr9 6685560 6685910 -135585534 - L1M4 LINE L1 -2825 3321 2999 1822 166 0 10 chr9 6685910 6686212 -135585232 - AluSx SINE Alu -13 299 1 4747 222 93 18 chr9 6686212 6686446 -135584998 - L1M4 LINE L1 -3147 2999 2528 1779 161 3 17 chr9 6686685 6686983 -135584461 + AluJb SINE Alu 1 294 -18 457 299 128 9 chr9 6687624 6687835 -135583609 - MIR SINE MIR -7 255 20 222 317 70 75 chr9 6688374 6688560 -135582884 - L2 LINE L2 -995 2319 2135 616 199 93 7 chr9 6688664 6688815 -135582629 - LTR53 LTR ERVL -61 458 295 453 159 0 0 chr9 6689162 6689231 -135582213 - AluJ/FLAM SINE Alu -243 69 1 1182 267 63 13 chr9 6689248 6689791 -135581653 - L1M4 LINE L1 -2400 3746 3177 35 0 0 0 chr9 6689795 6689830 -135581614 + AT_rich Low_complexity Low_complexity 1 35 0 1742 187 52 3 chr9 6689938 6690286 -135581158 + MLT1A1 LTR MaLR 1 365 0 230 121 0 0 chr9 6690527 6690560 -135580884 - L2 LINE L2 -16 3256 3224 309 214 87 19 chr9 6690636 6690739 -135580705 - MLT1J LTR MaLR -33 478 369 334 265 120 56 chr9 6690752 6690850 -135580594 - LTR16A1 LTR ERVL 0 457 367 195 100 0 0 chr9 6690850 6690880 -135580564 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 334 265 120 56 chr9 6690880 6691015 -135580429 - LTR16A1 LTR ERVL -90 367 209 2105 123 3 7 chr9 6691290 6691583 -135579861 - AluSx SINE Alu -16 296 5 330 234 34 88 chr9 6691626 6691858 -135579586 - MLT1J LTR MaLR -200 311 54 247 275 87 81 chr9 6691953 6692102 -135579342 - MIR SINE MIR -58 150 1 364 99 0 0 chr9 6692137 6692199 -135579245 - MLT2B3 LTR ERVL 0 520 403 234 81 0 0 chr9 6692199 6692236 -135579208 + (TA)n Simple_repeat Simple_repeat 2 38 0 227 104 0 0 chr9 6692243 6692291 -135579153 - LTR66 LTR ERVL -169 441 394 2019 199 17 60 chr9 6692296 6692310 -135579134 - MLT2B3 LTR ERVL -44 500 487 459 0 0 0 chr9 6692310 6692361 -135579083 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2019 199 17 60 chr9 6692361 6692780 -135578664 - MLT2B3 LTR ERVL -57 487 115 1939 154 3 3 chr9 6692780 6693085 -135578359 + AluJb SINE Alu 1 305 -7 2019 199 17 60 chr9 6693085 6693196 -135578248 - MLT2B3 LTR ERVL -429 115 1 1983 138 0 7 chr9 6693551 6693840 -135577604 + AluSg SINE Alu 1 287 -23 1337 87 0 0 chr9 6694092 6694276 -135577168 - L1PA14 LINE L1 0 6161 5978 1725 84 0 24 chr9 6694296 6694547 -135576897 - L1PA14 LINE L1 -291 5870 5626 204 295 103 13 chr9 6695150 6695228 -135576216 - L2 LINE L2 -21 3251 3167 38914 69 4 3 chr9 6695351 6697185 -135574259 + L1PA5 LINE L1 11 1841 -4313 2285 52 41 3 chr9 6697185 6697475 -135573969 - AluY SINE Alu -10 301 1 38914 69 4 3 chr9 6697475 6701774 -135569670 + L1PA5 LINE L1 1841 6152 -2 234 304 29 10 chr9 6704078 6704180 -135567264 + MIR SINE MIR 28 131 -131 425 222 22 0 chr9 6704217 6704307 -135567137 + MLT1H LTR MaLR 458 549 0 322 289 10 10 chr9 6704311 6704415 -135567029 + MIR SINE MIR 159 262 0 533 177 218 7 chr9 6704896 6705043 -135566401 - MER5A DNA MER1_type 0 189 12 637 246 191 24 chr9 6705677 6706018 -135565426 + MLT1J LTR MaLR 107 504 -7 25 0 0 0 chr9 6706441 6706466 -135564978 + AT_rich Low_complexity Low_complexity 1 25 0 331 266 24 32 chr9 6706590 6706714 -135564730 - MER117 DNA MER1_type -69 128 6 1952 154 23 0 chr9 6707741 6708047 -135563397 - AluSq SINE Alu 0 313 1 22 0 0 0 chr9 6708170 6708192 -135563252 + AT_rich Low_complexity Low_complexity 1 22 0 233 237 21 10 chr9 6708949 6709046 -135562398 - L1ME LINE L1 -193 5928 5831 850 213 66 92 chr9 6709422 6709769 -135561675 - MER46C DNA MER2_type 0 338 1 646 258 30 39 chr9 6709907 6710117 -135561327 - MIR SINE MIR -3 259 52 1143 232 77 16 chr9 6710853 6710926 -135560518 - MSTD LTR MaLR 0 396 329 1930 158 6 19 chr9 6710926 6711237 -135560207 + AluJo SINE Alu 1 307 -5 1143 232 77 16 chr9 6711237 6711473 -135559971 - MSTD LTR MaLR -67 329 68 739 62 0 0 chr9 6711473 6711569 -135559875 + AluSc SINE Alu 212 307 -2 432 168 47 0 chr9 6711579 6711668 -135559776 - MSTD LTR MaLR -344 89 1 680 284 48 141 chr9 6712435 6712885 -135558559 + L2 LINE L2 1950 2440 -874 1756 196 17 63 chr9 6712885 6713221 -135558223 - MSTD LTR MaLR -1 395 80 2363 103 0 0 chr9 6713221 6713523 -135557921 - AluSc SINE Alu -7 302 1 1756 196 17 63 chr9 6713523 6713600 -135557844 - MSTD LTR MaLR -316 80 1 680 284 48 141 chr9 6713600 6713712 -135557732 + L2 LINE L2 2440 2561 -753 2473 84 0 3 chr9 6713712 6714023 -135557421 - AluY SINE Alu 0 311 2 680 284 48 141 chr9 6714023 6714382 -135557062 + L2 LINE L2 2561 2786 -528 653 302 21 8 chr9 6714415 6714650 -135556794 - Charlie8 DNA MER1_type -2179 238 1 1452 167 105 0 chr9 6715171 6715465 -135555979 + MER44D DNA MER2_type 9 603 -6 2024 121 11 3 chr9 6716150 6716432 -135555012 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr9 6716436 6716456 -135554988 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1982 155 39 62 chr9 6716625 6717010 -135554434 + MSTB1 LTR MaLR 3 378 -54 2813 95 87 27 chr9 6717010 6717494 -135553950 + MER75 DNA T2_type 2 514 0 1982 155 39 62 chr9 6717494 6717546 -135553898 + MSTB1 LTR MaLR 378 430 -2 184 287 58 35 chr9 6717567 6717654 -135553790 + L2 LINE L2 3179 3267 -5 5703 124 32 13 chr9 6718294 6719302 -135552142 + Tigger3b DNA MER2_type 7 1033 -198 1912 149 56 20 chr9 6719306 6719696 -135551748 + MER4E LTR ERV1 371 774 -5 268 288 105 13 chr9 6719722 6719875 -135551569 + L1MC4a LINE L1 6415 6581 -1227 * 402 230 178 0 chr9 6719872 6720007 -135551437 + L1MC4 LINE L1 6769 6927 -1115 1239 262 67 80 chr9 6720055 6720708 -135550736 - LTR19C LTR ERV1 0 779 135 279 214 0 0 chr9 6720764 6720834 -135550610 + L1MC4 LINE L1 7154 7223 -819 418 297 110 7 chr9 6721495 6721640 -135549804 - MIR3 SINE MIR -15 193 34 285 303 19 0 chr9 6722069 6722224 -135549220 - MER103 DNA DNA 0 166 9 2130 120 3 13 chr9 6722911 6723219 -135548225 - AluSx SINE Alu -7 305 1 233 167 17 0 chr9 6723387 6723447 -135547997 - L1ME4a LINE L1 -1 6120 6060 532 290 80 35 chr9 6723463 6723745 -135547699 - L1ME4a LINE L1 -139 5982 5714 447 87 0 0 chr9 6723745 6723814 -135547630 + (TG)n Simple_repeat Simple_repeat 2 70 0 532 290 80 35 chr9 6723814 6724106 -135547338 - L1ME4a LINE L1 -407 5714 5382 1547 198 13 31 chr9 6724461 6724779 -135546665 + AluJo SINE Alu 1 312 0 417 364 18 49 chr9 6724869 6725155 -135546289 - L2 LINE L2 -493 2821 2545 266 259 52 0 chr9 6725237 6725295 -135546149 - MIR SINE MIR -116 92 32 274 354 137 13 chr9 6725424 6725803 -135545641 - L2 LINE L2 -903 2411 1986 666 176 14 131 chr9 6726016 6726237 -135545207 + MIR SINE MIR 68 262 0 1059 94 50 28 chr9 6726640 6726820 -135544624 + L1MB3 LINE L1 5999 6182 -1 612 242 80 58 chr9 6728606 6728944 -135542500 - L1MEc LINE L1 -3723 2423 2110 2405 50 0 0 chr9 6728975 6729283 -135542161 - AluY SINE Alu 0 308 1 679 198 93 0 chr9 6729286 6729448 -135541996 - L1 LINE L1 -1800 4346 4170 3201 88 0 0 chr9 6731327 6731768 -135539676 - L1P LINE L1 -5705 441 1 29 60 0 0 chr9 6731783 6731833 -135539611 + AT_rich Low_complexity Low_complexity 1 50 0 2051 118 0 0 chr9 6731973 6732244 -135539200 + AluSx SINE Alu 24 294 -18 2193 96 0 51 chr9 6732450 6732764 -135538680 + AluSc SINE Alu 1 298 -11 6038 138 16 16 chr9 6733084 6735121 -135536323 - L1MA3 LINE L1 -1 6304 4266 297 73 0 0 chr9 6735122 6735163 -135536281 + HERVL LTR ERVL 1339 1379 -4275 389 301 46 53 chr9 6735238 6735833 -135535611 + L1M4 LINE L1 2402 3000 -3146 1715 209 64 43 chr9 6735833 6736301 -135535143 - MER31A LTR ERV1 -4 481 4 389 301 46 53 chr9 6736301 6736422 -135535022 + L1M4 LINE L1 3000 3120 -3026 2176 127 7 0 chr9 6736422 6736729 -135534715 + AluSx SINE Alu 1 309 -3 389 301 46 53 chr9 6736729 6736972 -135534472 + L1M4 LINE L1 3120 3355 -2791 1275 236 64 12 chr9 6737101 6737520 -135533924 + L1M4 LINE L1 4507 4947 -1199 210 168 0 69 chr9 6737523 6737624 -135533820 + GA-rich Low_complexity Low_complexity 1 94 0 388 252 17 0 chr9 6737624 6737743 -135533701 + L1M4 LINE L1 4943 5063 -1083 211 125 0 71 chr9 6737819 6737875 -135533569 + (GGGA)n Simple_repeat Simple_repeat 2 53 0 413 237 17 0 chr9 6737905 6738023 -135533421 + L1MC2 LINE L1 4943 5062 -1084 1040 168 139 9 chr9 6738555 6738811 -135532633 + L1ME1 LINE L1 5877 6161 -5 2246 146 55 55 chr9 6739098 6739586 -135531858 + L1MC2 LINE L1 5436 5923 -410 1276 158 14 0 chr9 6739586 6739808 -135531636 + Tigger3(Golem) DNA MER2_type 1 225 -2804 1862 87 42 19 chr9 6739821 6740131 -135531313 - Tigger3b DNA MER2_type -572 659 343 30 0 0 0 chr9 6741738 6741768 -135529676 + AT_rich Low_complexity Low_complexity 1 30 0 1002 119 57 23 chr9 6741954 6742131 -135529313 - MER46A DNA MER2_type 0 236 54 212 57 0 29 chr9 6743545 6743580 -135527864 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1117 147 15 10 chr9 6743657 6743854 -135527590 + L1MC2 LINE L1 6139 6336 -8 449 257 86 29 chr9 6743886 6744026 -135527418 + MIR SINE MIR 40 187 -75 262 279 0 15 chr9 6744055 6744123 -135527321 + MER5A DNA MER1_type 10 76 -113 1764 159 43 7 chr9 6744123 6744424 -135527020 + AluJb SINE Alu 1 312 0 231 36 0 0 chr9 6744838 6744866 -135526578 + (A)n Simple_repeat Simple_repeat 1 28 0 2449 60 0 7 chr9 6744873 6745175 -135526269 + AluY SINE Alu 1 300 -11 6379 130 16 15 chr9 6745495 6747531 -135523913 - L1MA3 LINE L1 -1 6304 4266 297 73 0 0 chr9 6747532 6747573 -135523871 + HERVL LTR ERVL 1339 1379 -4275 565 313 51 47 chr9 6747648 6748243 -135523201 + L1M4 LINE L1 2402 2993 -3153 1715 209 64 43 chr9 6748243 6748711 -135522733 - MER31A LTR ERV1 -4 481 4 565 313 51 47 chr9 6748711 6748832 -135522612 + L1M4 LINE L1 2993 3112 -3034 2176 127 7 0 chr9 6748832 6749139 -135522305 + AluSx SINE Alu 1 309 -3 565 313 51 47 chr9 6749139 6749685 -135521759 + L1M4 LINE L1 3112 3671 -2475 790 334 47 31 chr9 6749722 6750320 -135521124 + L1M4 LINE L1 4018 4640 -1506 2196 108 0 44 chr9 6750320 6750466 -135520978 + AluSx SINE Alu 1 127 -185 2469 82 0 22 chr9 6750466 6750781 -135520663 + AluY SINE Alu 1 308 -3 2196 108 0 44 chr9 6750781 6750949 -135520495 + AluSx SINE Alu 127 301 -11 790 334 47 31 chr9 6750949 6751354 -135520090 + L1M4 LINE L1 4640 5037 -1109 * 1364 124 10 74 chr9 6751343 6751575 -135519869 + L1MC1 LINE L1 5657 5754 -579 2330 112 0 6 chr9 6751575 6751888 -135519556 + AluSx SINE Alu 1 311 -1 1364 124 10 74 chr9 6751888 6752020 -135519424 + L1MC1 LINE L1 5754 5893 -440 378 0 0 0 chr9 6752043 6752085 -135519359 + (CA)n Simple_repeat Simple_repeat 2 43 0 360 327 19 0 chr9 6752198 6752302 -135519142 + L2 LINE L2 3162 3267 -5 252 0 0 0 chr9 6752737 6752765 -135518679 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2133 135 26 0 chr9 6754526 6754830 -135516614 + AluSx SINE Alu 1 312 0 1554 214 38 17 chr9 6755122 6755623 -135515821 - MER21B LTR ERV1 -107 756 206 1137 157 20 0 chr9 6755704 6755901 -135515543 - L1PB3 LINE L1 -1 6153 5953 2158 94 0 60 chr9 6755910 6756228 -135515216 - AluSc SINE Alu -10 299 1 237 259 0 0 chr9 6756228 6756282 -135515162 - MER21B LTR ERV1 -770 93 40 2051 118 0 0 chr9 6756434 6756705 -135514739 - AluSx SINE Alu -18 294 24 29 60 0 0 chr9 6756845 6756895 -135514549 + AT_rich Low_complexity Low_complexity 1 50 0 27322 42 1 3 chr9 6756910 6763076 -135508368 + L1PA4 LINE L1 1 6152 -3 1053 277 95 25 chr9 6764045 6764773 -135506671 - L1ME LINE L1 -403 5759 4922 2194 109 0 0 chr9 6764773 6765057 -135506387 + AluSx SINE Alu 5 288 -24 1053 277 95 25 chr9 6765057 6765427 -135506017 - L1ME LINE L1 -1240 4922 4579 265 353 15 45 chr9 6765487 6765620 -135505824 - L2 LINE L2 0 3272 3144 2087 175 35 22 chr9 6765750 6766156 -135505288 - MLT2D LTR ERVL 0 414 4 2126 134 3 0 chr9 6766156 6766454 -135504990 - AluJb SINE Alu -13 299 1 2329 110 0 16 chr9 6767016 6767333 -135504111 - AluSx SINE Alu 0 312 1 840 125 8 16 chr9 6767339 6767467 -135503977 - FLAM_C SINE Alu -10 133 7 420 274 42 38 chr9 6767849 6768016 -135503428 + MIR3 SINE MIR 4 172 -36 205 271 85 0 chr9 6768127 6768186 -135503258 + MIR3 SINE MIR 142 205 -3 501 290 10 62 chr9 6768411 6768604 -135502840 + MER5A DNA MER1_type 1 183 -6 528 220 165 11 chr9 6768982 6769140 -135502304 + MER5A DNA MER1_type 4 189 0 692 203 24 0 chr9 6769242 6769365 -135502079 - AluJb SINE Alu -46 266 141 1600 109 9 0 chr9 6769927 6770148 -135501296 + AluSq SINE Alu 77 299 -14 3326 234 109 26 chr9 6770412 6771581 -135499863 - HAL1 LINE L1 -540 1967 702 241 224 15 15 chr9 6771601 6771668 -135499776 + MLT1L LTR MaLR 15 81 -534 1278 228 71 63 chr9 6772869 6773378 -135498066 + HAL1 LINE L1 3 515 -1992 359 265 138 5 chr9 6773444 6773633 -135497811 + L1ME LINE L1 5391 5604 -517 370 184 178 55 chr9 6773639 6773802 -135497642 + L1ME LINE L1 5622 5804 -317 283 150 0 0 chr9 6773948 6774008 -135497436 + L1MC3 LINE L1 7726 7785 0 233 310 128 75 chr9 6774531 6774662 -135496782 - L2 LINE L2 -211 3061 2912 2023 136 16 48 chr9 6774662 6775038 -135496406 - THE1B LTR MaLR 0 364 1 233 310 128 75 chr9 6775038 6775132 -135496312 - L2 LINE L2 -360 2912 2824 532 227 102 6 chr9 6775316 6775492 -135495952 + L1ME3A LINE L1 5759 5951 -219 255 226 0 0 chr9 6775732 6775794 -135495650 + HsTC2 DNA Tc2 1 62 -1836 21 36 0 0 chr9 6775819 6775847 -135495597 + AT_rich Low_complexity Low_complexity 1 28 0 688 133 38 0 chr9 6775847 6775952 -135495492 - FRAM SINE Alu -21 155 47 13924 197 30 19 chr9 6775998 6778479 -135492965 + L1PB1 LINE L1 1 2454 -4434 207 69 0 0 chr9 6778479 6778508 -135492936 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 13924 197 30 19 chr9 6778508 6779403 -135492041 + L1PB1 LINE L1 2454 3338 -3550 2172 98 14 0 chr9 6779403 6779690 -135491754 + AluSc SINE Alu 3 293 -16 13924 197 30 19 chr9 6779690 6779910 -135491534 + L1PB1 LINE L1 3338 3554 -3334 2277 109 0 0 chr9 6779910 6780213 -135491231 + AluSx SINE Alu 1 303 -9 13924 197 30 19 chr9 6780213 6783229 -135488215 + L1PB1 LINE L1 3554 6888 0 594 183 40 40 chr9 6783230 6783356 -135488088 - FLAM_C SINE Alu -17 126 1 1865 173 84 13 chr9 6783359 6783752 -135487692 + MSTB LTR MaLR 2 422 -4 1219 152 107 49 chr9 6784046 6784324 -135487120 + AluJb SINE Alu 27 318 0 2044 178 18 13 chr9 6784798 6785181 -135486263 - MSTD LTR MaLR -11 385 1 5195 118 7 23 chr9 6787188 6788051 -135483393 - L1PA16 LINE L1 -1 6165 5317 2871 10 0 0 chr9 6788054 6788365 -135483079 - AluYa5 SINE Alu 0 311 1 679 198 93 0 chr9 6788368 6788530 -135482914 - L1 LINE L1 -1800 4346 4170 21 0 0 0 chr9 6792408 6792429 -135479015 + AT_rich Low_complexity Low_complexity 1 21 0 319 316 85 69 chr9 6792831 6793288 -135478156 - L2 LINE L2 -182 3090 2616 1199 181 188 19 chr9 6793811 6794120 -135477324 + MLT1A1 LTR MaLR 5 365 0 10761 143 48 87 chr9 6794579 6796817 -135474627 + L1M4c LINE L1 14 2142 -4242 2371 96 0 13 chr9 6796817 6797131 -135474313 - AluY SINE Alu -1 310 1 10761 143 48 87 chr9 6797131 6797432 -135474012 + L1M4c LINE L1 2142 2453 -3931 38155 71 7 4 chr9 6797432 6803562 -135467882 + L1PA5 LINE L1 3 6153 -1 4007 228 56 2 chr9 6803566 6804444 -135467000 + L1MA4 LINE L1 6 930 -6238 336 236 56 14 chr9 6804444 6804516 -135466928 + L1MA4 LINE L1 858 932 -6236 * 10775 175 92 31 chr9 6804513 6806541 -135464903 + L1MA4 LINE L1 3405 5309 -2012 850 169 0 0 chr9 6806541 6806671 -135464773 + FLAM_C SINE Alu 3 132 -1 10775 175 92 31 chr9 6806671 6806828 -135464616 + L1MA4 LINE L1 5309 5455 -1866 1719 186 3 37 chr9 6806828 6807151 -135464293 - AluJo SINE Alu 0 312 1 10775 175 92 31 chr9 6807151 6807262 -135464182 + L1MA4 LINE L1 5455 5558 -1763 1971 158 0 13 chr9 6807262 6807578 -135463866 + AluJb SINE Alu 1 312 0 10775 175 92 31 chr9 6807578 6808766 -135462678 + L1MA4 LINE L1 5558 7145 -176 2402 67 3 3 chr9 6808766 6809063 -135462381 - AluY SINE Alu -14 297 1 10775 175 92 31 chr9 6809063 6809247 -135462197 + L1MA4 LINE L1 7145 7316 -5 5169 226 33 23 chr9 6809260 6809820 -135461624 + L1M4c LINE L1 2439 2992 -3390 2275 104 0 0 chr9 6809820 6810109 -135461335 + AluY SINE Alu 1 289 -22 5169 226 33 23 chr9 6810109 6811391 -135460053 + L1M4c LINE L1 2992 4307 -2075 468 282 10 0 chr9 6811913 6812016 -135459428 - L2 LINE L2 0 3313 3210 1401 163 45 45 chr9 6812021 6812126 -135459318 + AluJo SINE Alu 7 111 -201 1786 109 70 4 chr9 6812126 6812383 -135459061 - AluSx SINE Alu -38 274 1 1401 163 45 45 chr9 6812383 6812566 -135458878 + AluJo SINE Alu 110 295 -17 530 292 13 0 chr9 6813148 6813302 -135458142 - MIR SINE MIR 0 262 107 322 253 0 13 chr9 6813302 6813377 -135458067 + MER39 LTR ERV1 1 74 -633 932 149 0 37 chr9 6813391 6813552 -135457892 + FRAM SINE Alu 18 172 -4 1119 206 47 117 chr9 6813597 6814067 -135457377 + MER39 LTR ERV1 269 705 -2 352 257 20 20 chr9 6814068 6814169 -135457275 - MIR SINE MIR -151 111 11 210 273 0 0 chr9 6814270 6814314 -135457130 + L2 LINE L2 2963 3006 -307 290 194 16 16 chr9 6814316 6814378 -135457066 + MLT1B LTR MaLR 4 65 -325 2498 50 17 0 chr9 6814702 6815001 -135456443 - AluY SINE Alu -7 304 1 1815 171 7 13 chr9 6815171 6815469 -135455975 + AluJo SINE Alu 3 298 -14 2394 94 0 0 chr9 6816537 6816836 -135454608 + AluSg SINE Alu 1 299 -11 744 157 58 8 chr9 6817751 6817872 -135453572 - FLAM_A SINE Alu -2 131 5 744 258 97 5 chr9 6817950 6818167 -135453277 - MIR SINE MIR -18 244 8 252 130 0 0 chr9 6819167 6819213 -135452231 + (A)n Simple_repeat Simple_repeat 1 46 0 184 342 165 13 chr9 6819956 6820114 -135451330 + L2 LINE L2 2755 2936 -378 726 312 26 26 chr9 6820119 6820388 -135451056 + MER115 DNA AcHobo 34 302 -391 2300 90 0 34 chr9 6821500 6821822 -135449622 - AluSx SINE Alu -1 311 1 1285 312 71 47 chr9 6821918 6822059 -135449385 - ERVL LTR ERVL -3046 2608 2472 2325 84 3 0 chr9 6822059 6822375 -135449069 + AluSq SINE Alu 2 318 0 1285 312 71 47 chr9 6822375 6823351 -135448093 - ERVL LTR ERVL -3182 2472 1449 1019 340 52 38 chr9 6823503 6824261 -135447183 - ERVL LTR ERVL -3809 1187 420 1634 188 50 10 chr9 6824723 6824842 -135446602 + AluJo SINE Alu 2 115 -197 2227 95 0 7 chr9 6824842 6825136 -135446308 + AluSg SINE Alu 1 292 -18 1634 188 50 10 chr9 6825136 6825314 -135446130 + AluJo SINE Alu 115 311 -1 2166 139 0 0 chr9 6825314 6825617 -135445827 + AluSx SINE Alu 1 303 -9 2083 129 17 0 chr9 6825619 6825913 -135445531 + AluSx SINE Alu 1 299 -13 2112 183 39 39 chr9 6826355 6826819 -135444625 - MER67A LTR ERV1 0 543 80 294 154 282 0 chr9 6826887 6826965 -135444479 - MER67A LTR ERV1 -443 100 1 231 167 0 0 chr9 6827111 6827153 -135444291 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1781 186 3 0 chr9 6827966 6828262 -135443182 + AluJb SINE Alu 1 297 -15 803 215 0 0 chr9 6828267 6828411 -135443033 + AluSg/x SINE Alu 165 308 -2 360 94 0 0 chr9 6828411 6828464 -135442980 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 311 243 112 57 chr9 6828949 6829086 -135442358 + MER5A DNA MER1_type 29 186 -3 337 268 0 0 chr9 6829095 6829166 -135442278 + L1ME LINE L1 5512 5582 -539 15042 141 12 6 chr9 6829703 6831943 -135439501 + L1MA3 LINE L1 12 2264 -5301 1830 166 7 7 chr9 6831943 6832245 -135439199 - AluJb SINE Alu -10 302 1 4723 135 3 7 chr9 6832262 6832953 -135438491 + THE1-int LTR MaLR 629 1316 -264 384 129 16 0 chr9 6832953 6833015 -135438429 - MER61A LTR ERV1 -280 63 1 17498 79 49 22 chr9 6833015 6835257 -135436187 - MER61A-int LTR ERV1 0 5217 2903 1966 135 7 3 chr9 6835257 6835553 -135435891 + AluSx SINE Alu 1 297 -15 17498 79 49 22 chr9 6835553 6835754 -135435690 - MER61A-int LTR ERV1 -2314 2903 2709 15736 84 5 0 chr9 6835763 6837819 -135433625 + L1P LINE L1 11 2077 -4069 44061 50 1 4 chr9 6837819 6843985 -135427459 + L1PA5 LINE L1 2 6147 -7 8320 88 82 25 chr9 6844003 6845125 -135426319 - MER61A-int LTR ERV1 -2496 2721 1510 1892 117 60 0 chr9 6845125 6845406 -135426038 + AluY SINE Alu 13 310 -1 8320 88 82 25 chr9 6845406 6845609 -135425835 - MER61A-int LTR ERV1 -3707 1510 1320 337 134 45 15 chr9 6845583 6845650 -135425794 - MER61A-int LTR ERV1 -4418 799 731 * 2712 176 35 20 chr9 6845712 6846251 -135425193 - MER61A-int LTR ERV1 -4668 549 3 1941 135 74 19 chr9 6846252 6846577 -135424867 - MER61A LTR ERV1 0 343 1 15881 164 20 25 chr9 6846577 6846819 -135424625 + L1MA3 LINE L1 3353 3595 -4129 1703 180 0 66 chr9 6846819 6847153 -135424291 + AluJb SINE Alu 1 312 0 15881 164 20 25 chr9 6847153 6847499 -135423945 + L1MA3 LINE L1 3595 3941 -3783 2305 85 3 3 chr9 6847499 6847792 -135423652 + AluSp SINE Alu 1 293 -20 15881 164 20 25 chr9 6847792 6848968 -135422476 + L1MA3 LINE L1 3941 5121 -2603 21572 30 3 0 chr9 6848968 6852179 -135419265 - L1PA3 LINE L1 0 6155 2938 15881 164 20 25 chr9 6852179 6852279 -135419165 + L1MA3 LINE L1 5121 5220 -2504 1371 203 43 14 chr9 6852279 6852560 -135418884 + AluJo SINE Alu 1 289 -23 15881 164 20 25 chr9 6852560 6854943 -135416501 + L1MA3 LINE L1 5220 7557 -167 1903 169 0 6 chr9 6854943 6855257 -135416187 + AluSx SINE Alu 1 312 0 15881 164 20 25 chr9 6855257 6855423 -135416021 + L1MA3 LINE L1 7557 7722 -2 306 73 0 0 chr9 6855460 6855501 -135415943 + (TG)n Simple_repeat Simple_repeat 2 42 0 1276 194 68 4 chr9 6855529 6855667 -135415777 - AluJb SINE Alu -35 277 149 276 30 0 0 chr9 6855667 6855700 -135415744 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1276 194 68 4 chr9 6855700 6855813 -135415631 - AluJb SINE Alu -163 149 10 31 76 0 0 chr9 6855813 6855879 -135415565 + AT_rich Low_complexity Low_complexity 1 66 0 189 0 0 0 chr9 6855879 6855900 -135415544 + (TTATA)n Simple_repeat Simple_repeat 4 24 0 2142 136 0 0 chr9 6856027 6856328 -135415116 + AluSx SINE Alu 1 301 -11 334 271 140 28 chr9 6856333 6856551 -135414893 + L1ME LINE L1 5631 5820 -301 1278 186 7 52 chr9 6857264 6857533 -135413911 - AluJb SINE Alu -18 294 38 1805 132 50 46 chr9 6858117 6858470 -135412974 + MLT1B LTR MaLR 3 392 -36 341 176 29 29 chr9 6858630 6858698 -135412746 + MLT1B LTR MaLR 323 390 0 2134 135 0 0 chr9 6858773 6859069 -135412375 + AluSx SINE Alu 1 296 -16 561 144 25 8 chr9 6859083 6859201 -135412243 + GA-rich Low_complexity Low_complexity 1 120 0 1855 149 7 13 chr9 6859549 6859850 -135411594 + AluJo SINE Alu 7 305 -7 746 196 15 23 chr9 6860770 6860903 -135410541 + FLAM_A SINE Alu 2 133 0 204 275 33 33 chr9 6861360 6861451 -135409993 + (CATA)n Simple_repeat Simple_repeat 4 94 0 206 163 41 0 chr9 6861451 6861500 -135409944 + (CATG)n Simple_repeat Simple_repeat 4 54 0 1953 120 11 0 chr9 6861617 6861926 -135409518 - AluSx SINE Alu 0 312 1 2504 230 109 45 chr9 6862143 6862935 -135408509 - L1ME3 LINE L1 -16 6146 5305 941 207 57 10 chr9 6862992 6863185 -135408259 + MER8 DNA MER2_type 1 202 -37 450 139 0 28 chr9 6863431 6863503 -135407941 + Tigger2 DNA MER2_type 1 70 -2648 2366 83 0 13 chr9 6863730 6864030 -135407414 + AluY SINE Alu 1 296 -15 1226 124 0 0 chr9 6864033 6864202 -135407242 + AluSg/x SINE Alu 130 298 -14 1269 204 12 12 chr9 6864203 6864453 -135406991 + MLT1H LTR MaLR 22 271 -278 2127 138 0 0 chr9 6864579 6864891 -135406553 + AluSx SINE Alu 1 312 0 574 248 46 100 chr9 6864998 6865215 -135406229 + Tigger8 DNA MER2_type 155 347 -319 1718 183 3 3 chr9 6865215 6865505 -135405939 + AluJb SINE Alu 6 295 -17 574 248 46 100 chr9 6865505 6865638 -135405806 + Tigger8 DNA MER2_type 347 486 -180 298 238 72 0 chr9 6865757 6865876 -135405568 + L1ME LINE L1 5631 5765 -397 1578 158 18 32 chr9 6865879 6866157 -135405287 + AluJo SINE Alu 1 274 -38 793 273 24 14 chr9 6866261 6866470 -135404974 + MER58A DNA MER1_type 4 214 -10 1709 197 0 7 chr9 6866816 6867110 -135404334 - AluJo SINE Alu -20 292 1 1133 226 8 77 chr9 6867178 6867358 -135404086 + MLT1G1 LTR MaLR 1 106 -484 2355 75 9 40 chr9 6867358 6867680 -135403764 + AluSx SINE Alu 1 312 0 1133 226 8 77 chr9 6867680 6867859 -135403585 + MLT1G1 LTR MaLR 106 296 -294 290 138 35 11 chr9 6867886 6867973 -135403471 + GA-rich Low_complexity Low_complexity 2 90 0 420 221 11 72 chr9 6868010 6868151 -135403293 + MLT1F1 LTR MaLR 425 530 -37 1363 175 163 44 chr9 6868245 6868448 -135402996 - LTR54B LTR ERV1 -11 487 310 2255 119 0 0 chr9 6868448 6868743 -135402701 - AluSx SINE Alu -17 295 1 1363 175 163 44 chr9 6868743 6868953 -135402491 - LTR54B LTR ERV1 -188 310 17 2006 133 0 36 chr9 6868953 6869261 -135402183 - AluSx SINE Alu -15 297 1 1363 175 163 44 chr9 6869261 6869281 -135402163 - LTR54B LTR ERV1 -481 17 1 275 259 206 46 chr9 6869573 6869704 -135401740 + MIR3 SINE MIR 21 172 -36 1871 175 3 0 chr9 6870659 6870967 -135400477 + AluSx SINE Alu 1 309 -3 201 341 49 71 chr9 6871453 6871864 -135399580 + L2 LINE L2 2257 2658 -656 253 275 174 9 chr9 6872214 6872323 -135399121 - MIR SINE MIR -119 143 17 545 105 13 0 chr9 6872682 6872758 -135398686 - MADE1 DNA Mariner -3 77 1 2336 92 0 7 chr9 6872930 6873234 -135398210 - AluSx SINE Alu -10 302 1 1326 47 0 10 chr9 6873473 6873711 -135397733 + AluY SINE Alu 2 286 -25 279 0 0 0 chr9 6873711 6873742 -135397702 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1326 47 0 10 chr9 6873742 6873761 -135397683 + AluY SINE Alu 286 304 -7 30 0 0 0 chr9 6874967 6874997 -135396447 + GC_rich Low_complexity Low_complexity 1 30 0 325 290 54 0 chr9 6877106 6877199 -135394245 - MER91B DNA MER1_type -1 189 92 460 149 243 68 chr9 6877443 6877591 -135393853 + MER5A DNA MER1_type 10 183 -6 1998 103 19 23 chr9 6877612 6877922 -135393522 - AluSc SINE Alu 0 309 1 2417 28 52 0 chr9 6878090 6878381 -135393063 - AluY SINE Alu -5 306 1 185 123 53 18 chr9 6878572 6878629 -135392815 + (TA)n Simple_repeat Simple_repeat 1 59 0 23 0 0 0 chr9 6879814 6879837 -135391607 + AT_rich Low_complexity Low_complexity 1 23 0 1690 168 144 47 chr9 6880331 6880753 -135390691 - MLT1C LTR MaLR -4 463 1 357 179 64 13 chr9 6880780 6880858 -135390586 - MLT1B LTR MaLR -271 119 38 1488 161 38 65 chr9 6881288 6881603 -135389841 - AluJb SINE Alu 0 307 1 2069 112 17 3 chr9 6881615 6881909 -135389535 - AluSg SINE Alu -12 298 1 2300 63 7 17 chr9 6881977 6882276 -135389168 + AluY SINE Alu 1 296 -15 2131 119 0 16 chr9 6882961 6883271 -135388173 - AluSx SINE Alu -7 305 1 453 260 136 16 chr9 6883475 6883688 -135387756 - L1ME3A LINE L1 -321 5800 5612 1233 117 6 0 chr9 6883741 6883912 -135387532 - AluSg SINE Alu -116 194 23 474 271 86 24 chr9 6883915 6884170 -135387274 - L1ME3A LINE L1 -1384 4762 4492 987 148 12 0 chr9 6884170 6884332 -135387112 - AluJb SINE Alu -18 294 131 2246 108 0 3 chr9 6885218 6885523 -135385921 + AluSg SINE Alu 1 304 -6 349 285 46 8 chr9 6885586 6885716 -135385728 + L1 LINE L1 4060 4194 -1952 2571 153 244 139 chr9 6886074 6886641 -135384803 - L1MC3 LINE L1 -2 7783 7276 271 214 39 78 chr9 6886641 6886744 -135384700 - MLT1F1 LTR MaLR -442 125 27 2571 153 244 139 chr9 6886744 6887027 -135384417 - L1MC3 LINE L1 -509 7276 7024 2009 115 13 35 chr9 6887027 6887341 -135384103 + AluSx SINE Alu 1 307 -5 2571 153 244 139 chr9 6887341 6887491 -135383953 - L1MC3 LINE L1 -761 7024 6565 209 370 69 40 chr9 6887834 6888007 -135383437 + MIR SINE MIR 1 178 -84 2176 118 10 0 chr9 6888297 6888602 -135382842 - AluSq SINE Alu -5 308 1 2022 134 7 0 chr9 6888959 6889251 -135382193 + AluSx SINE Alu 1 294 -18 249 278 35 43 chr9 6889826 6889941 -135381503 - L1ME3A LINE L1 -95 6075 5962 1911 160 20 0 chr9 6890096 6890402 -135381042 - AluJo SINE Alu 0 312 1 2048 134 3 7 chr9 6890436 6890735 -135380709 + AluSx SINE Alu 1 298 -14 182 369 98 16 chr9 6890749 6890871 -135380573 + MIR SINE MIR 19 150 -112 360 191 0 0 chr9 6890967 6891035 -135380409 - Alu SINE Alu 0 301 234 1043 95 0 20 chr9 6891035 6891183 -135380261 - AluSq/x SINE Alu -165 147 3 261 308 64 0 chr9 6891332 6891410 -135380034 - MIR SINE MIR -149 113 31 1941 145 17 0 chr9 6891574 6891864 -135379580 - AluSq SINE Alu -18 295 1 1830 213 107 22 chr9 6891993 6892481 -135378963 + MER74B LTR ERVL 78 606 -16 1281 199 102 0 chr9 6892880 6893146 -135378298 + AluJo SINE Alu 1 293 -19 320 331 142 7 chr9 6894011 6894159 -135377285 + MIR SINE MIR 6 173 -89 2113 109 31 7 chr9 6894394 6894688 -135376756 - AluSx SINE Alu -11 301 1 2099 118 7 7 chr9 6896004 6896293 -135375151 - AluSx SINE Alu -23 289 1 1402 204 25 32 chr9 6896405 6896554 -135374890 - AluJb SINE Alu -32 280 132 1986 105 54 14 chr9 6896554 6896848 -135374596 - AluSx SINE Alu -6 306 1 1402 204 25 32 chr9 6896848 6896978 -135374466 - AluJb SINE Alu -180 132 3 544 164 239 13 chr9 6896988 6897147 -135374297 - L1MB7 LINE L1 0 6184 5990 1942 130 0 7 chr9 6897158 6897463 -135373981 - AluSx SINE Alu 0 303 1 2092 143 0 0 chr9 6898779 6899087 -135372357 - AluSx SINE Alu -4 308 1 455 328 218 29 chr9 6899092 6899162 -135372282 + L3 LINE CR1 916 971 -606 1904 158 20 0 chr9 6899162 6899466 -135371978 - AluSx SINE Alu -2 310 1 455 328 218 29 chr9 6899466 6899922 -135371522 + L3 LINE CR1 971 1542 -35 1418 142 134 0 chr9 6900741 6900994 -135370450 - AluSx SINE Alu -12 300 14 21 0 0 0 chr9 6902081 6902102 -135369342 + AT_rich Low_complexity Low_complexity 1 21 0 312 282 58 83 chr9 6902330 6902486 -135368958 - MER5B DNA MER1_type -1 177 26 277 146 42 0 chr9 6902528 6902576 -135368868 - MER5B DNA MER1_type -128 50 1 598 180 33 161 chr9 6902584 6902657 -135368787 + MER5A DNA MER1_type 1 82 -107 1755 154 17 33 chr9 6902657 6902956 -135368488 + AluJb SINE Alu 7 300 -12 598 180 33 161 chr9 6902956 6903093 -135368351 + MER5A DNA MER1_type 82 184 -5 1864 137 7 0 chr9 6903547 6903818 -135367626 - AluSx SINE Alu -39 273 1 1602 167 7 48 chr9 6904006 6904344 -135367100 - AluJo SINE Alu 0 327 2 449 269 173 15 chr9 6904830 6905027 -135366417 - MIR SINE MIR -32 230 3 211 235 20 92 chr9 6906062 6906160 -135365284 - MER5A DNA MER1_type -32 157 67 2084 125 3 3 chr9 6906160 6906456 -135364988 - AluSq SINE Alu -17 296 1 934 145 0 36 chr9 6906563 6906701 -135364743 + FLAM_C SINE Alu 1 133 0 1913 137 11 0 chr9 6906838 6907115 -135364329 - AluSx SINE Alu -32 280 1 1804 161 0 20 chr9 6907117 6907409 -135364035 - AluJo SINE Alu -17 295 10 1544 165 0 26 chr9 6907536 6907714 -135363730 - AluJb SINE Alu -2 310 140 1934 124 39 0 chr9 6907714 6907997 -135363447 - AluSx SINE Alu -18 294 1 1544 165 0 26 chr9 6907997 6908091 -135363353 - AluJb SINE Alu -172 140 45 1869 151 24 10 chr9 6908123 6908421 -135363023 + AluSx SINE Alu 3 304 -8 2385 79 0 3 chr9 6908451 6908743 -135362701 - AluY SINE Alu -20 291 1 605 289 73 50 chr9 6909160 6909503 -135361941 + HAL1 LINE L1 1 351 -2156 686 228 159 38 chr9 6909545 6909940 -135361504 + HAL1 LINE L1 1728 2170 -337 317 259 265 24 chr9 6909988 6910154 -135361290 + MIR SINE MIR 17 222 -40 280 229 141 65 chr9 6910232 6910402 -135361042 + HAL1 LINE L1 2305 2487 -20 419 235 17 9 chr9 6910525 6910640 -135360804 - L1MC5 LINE L1 -102 7859 7744 306 323 8 24 chr9 6910717 6910841 -135360603 + LTR16B LTR ERVL 34 155 -309 265 321 28 9 chr9 6910939 6911048 -135360396 + LTR16B LTR ERVL 292 402 -62 637 249 121 66 chr9 6911094 6911113 -135360331 - L1MC5 LINE L1 -254 7707 7690 2438 175 68 68 chr9 6911113 6911673 -135359771 + MER68 LTR ERV1 3 562 0 637 249 121 66 chr9 6911673 6912091 -135359353 - L1MC5 LINE L1 -271 7690 7246 416 201 179 80 chr9 6912165 6912560 -135358884 - L1MC5 LINE L1 -888 6920 6563 2227 53 36 13 chr9 6913021 6913325 -135358119 - AluY SINE Alu 0 311 1 237 33 0 0 chr9 6913328 6913358 -135358086 + (TTG)n Simple_repeat Simple_repeat 1 30 0 822 74 0 50 chr9 6913358 6913464 -135357980 - AluSc SINE Alu -32 277 174 254 243 0 27 chr9 6913525 6913599 -135357845 + (TA)n Simple_repeat Simple_repeat 1 72 0 890 281 91 12 chr9 6913600 6914017 -135357427 - L1MC5 LINE L1 -1883 5925 5476 212 298 114 23 chr9 6914277 6914408 -135357036 - L2 LINE L2 -913 2401 2259 1812 123 0 11 chr9 6915214 6915474 -135355970 + AluY SINE Alu 40 296 -15 425 300 79 11 chr9 6915564 6915754 -135355690 - MIR SINE MIR 0 262 60 914 189 86 6 chr9 6916398 6916573 -135354871 - MER5A DNA MER1_type 0 189 1 207 0 0 0 chr9 6916685 6916708 -135354736 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3432 53 0 2 chr9 6916708 6916906 -135354538 - L1PA5 LINE L1 -16 6138 5941 15270 100 24 33 chr9 6916906 6917257 -135354187 - L1MA4A LINE L1 -362 5941 5588 1756 187 7 0 chr9 6917257 6917556 -135353888 + AluJb SINE Alu 1 301 -11 15270 100 24 33 chr9 6917556 6920149 -135351295 - L1MA4A LINE L1 -715 5588 3049 5076 55 12 5 chr9 6920149 6920783 -135350661 + L1PA7 LINE L1 5496 6153 -1 15270 100 24 33 chr9 6920783 6920808 -135350636 - L1MA4A LINE L1 -3254 3049 3025 2283 110 0 0 chr9 6920941 6921241 -135350203 + AluSx SINE Alu 1 300 -12 1577 209 3 0 chr9 6921246 6921543 -135349901 + AluJo SINE Alu 1 298 -14 285 149 14 27 chr9 6922881 6922955 -135348489 + CT-rich Low_complexity Low_complexity 1 73 0 1916 133 4 0 chr9 6922955 6923226 -135348218 - AluSx SINE Alu -40 272 1 304 218 149 0 chr9 6923411 6923498 -135347946 - L1ME LINE L1 -385 5736 5637 22 35 0 0 chr9 6923539 6923568 -135347876 + AT_rich Low_complexity Low_complexity 1 29 0 850 236 6 0 chr9 6923691 6923873 -135347571 + MER58A DNA MER1_type 42 224 0 21 0 0 0 chr9 6923875 6923896 -135347548 + AT_rich Low_complexity Low_complexity 1 21 0 2215 115 0 0 chr9 6924191 6924479 -135346965 + AluSg SINE Alu 1 288 -22 2107 118 7 3 chr9 6924554 6924850 -135346594 + AluSp SINE Alu 1 297 -16 1854 155 3 3 chr9 6925026 6925323 -135346121 - AluSx SINE Alu -13 299 3 22 0 0 0 chr9 6925325 6925347 -135346097 + AT_rich Low_complexity Low_complexity 1 22 0 732 256 105 49 chr9 6925406 6926358 -135345086 - L1ME LINE L1 -402 5768 4759 301 327 99 6 chr9 6926454 6926766 -135344678 - L1ME LINE L1 -1800 4346 4006 729 265 161 12 chr9 6926774 6927291 -135344153 - L1ME LINE L1 -2381 3765 3172 1040 118 0 0 chr9 6927673 6927809 -135343635 + AluSq/x SINE Alu 1 136 -177 2277 121 0 6 chr9 6927810 6928124 -135343320 + AluSx SINE Alu 1 312 0 728 247 103 0 chr9 6928288 6928482 -135342962 + L2 LINE L2 2864 3077 -236 2132 85 4 4 chr9 6929997 6930268 -135341176 - AluY SINE Alu -40 271 1 1921 141 0 35 chr9 6931192 6931505 -135339939 - AluJb SINE Alu -10 302 1 356 143 14 0 chr9 6931505 6931575 -135339869 + L1MD2 LINE L1 6289 6359 0 2054 136 3 10 chr9 6931666 6931797 -135339647 + AluSx SINE Alu 5 135 -177 2086 151 0 0 chr9 6931797 6932108 -135339336 + AluSq SINE Alu 1 311 -2 2054 136 3 10 chr9 6932108 6932286 -135339158 + AluSx SINE Alu 135 312 0 188 377 124 22 chr9 6933000 6933501 -135337943 + L2 LINE L2 2380 2931 -383 873 81 15 37 chr9 6933645 6933781 -135337663 - FLAM_C SINE Alu 0 133 1 315 253 33 11 chr9 6933990 6934081 -135337363 + L2 LINE L2 2377 2469 -845 282 240 145 45 chr9 6934244 6934371 -135337073 + HAL1 LINE L1 2129 2285 -222 2511 80 3 0 chr9 6934371 6934682 -135336762 + AluSp SINE Alu 1 312 -1 282 240 145 45 chr9 6934682 6934754 -135336690 + HAL1 LINE L1 2285 2348 -159 1104 195 73 41 chr9 6934755 6935001 -135336443 + AluJb SINE Alu 1 254 -58 228 321 0 0 chr9 6935001 6935054 -135336390 + G-rich Low_complexity Low_complexity 1 53 0 1334 174 51 68 chr9 6935185 6935479 -135335965 + AluJo SINE Alu 21 309 -3 2414 94 3 0 chr9 6935552 6935860 -135335584 + AluSp SINE Alu 1 309 -4 25 51 0 0 chr9 6935870 6935909 -135335535 + AT_rich Low_complexity Low_complexity 1 39 0 1424 181 55 66 chr9 6935939 6936193 -135335251 - MER2 DNA MER2_type 0 344 94 2194 120 3 0 chr9 6936193 6936492 -135334952 - AluSx SINE Alu -7 305 6 1424 181 55 66 chr9 6936492 6936585 -135334859 - MER2 DNA MER2_type -250 94 1 2195 84 38 3 chr9 6936656 6936943 -135334501 + AluY SINE Alu 1 297 -14 1306 173 47 17 chr9 6938562 6938911 -135332533 - L1MC/D LINE L1 -517 5663 5290 368 272 158 16 chr9 6939305 6939489 -135331955 + MIR SINE MIR 49 258 -4 2149 144 0 0 chr9 6939515 6939814 -135331630 + AluSx SINE Alu 1 299 -13 538 191 122 63 chr9 6940364 6940553 -135330891 + MIR SINE MIR 13 212 -50 841 161 0 15 chr9 6941066 6941203 -135330241 - FLAM_C SINE Alu -8 135 1 23 54 0 0 chr9 6943420 6943457 -135327987 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr9 6944488 6944509 -135326935 + AT_rich Low_complexity Low_complexity 1 21 0 2015 137 0 3 chr9 6944704 6944997 -135326447 - AluSx SINE Alu -20 292 1 198 0 0 0 chr9 6945157 6945179 -135326265 + (A)n Simple_repeat Simple_repeat 1 22 0 684 259 153 35 chr9 6946211 6946392 -135325052 - L1ME4a LINE L1 -7 6114 5956 1528 174 0 33 chr9 6946392 6946668 -135324776 - AluJo SINE Alu -45 267 1 684 259 153 35 chr9 6946668 6947023 -135324421 - L1ME4a LINE L1 -165 5956 5515 358 143 0 0 chr9 6947371 6947427 -135324017 + AluS SINE Alu 2 57 -251 * 5456 117 56 32 chr9 6947425 6947522 -135323922 + Tigger3b DNA MER2_type 191 284 -2744 2044 126 0 0 chr9 6947522 6947836 -135323608 - AluSx SINE Alu 0 314 1 5456 117 56 32 chr9 6947836 6948016 -135323428 + Tigger3b DNA MER2_type 284 458 -2570 1788 154 7 30 chr9 6948016 6948315 -135323129 + AluJb SINE Alu 1 292 -20 5456 117 56 32 chr9 6948315 6948576 -135322868 + Tigger3b DNA MER2_type 458 711 -2317 2249 109 0 0 chr9 6948576 6948870 -135322574 + AluSx SINE Alu 2 295 -17 5456 117 56 32 chr9 6948870 6949345 -135322099 + Tigger3b DNA MER2_type 711 1231 0 2315 96 7 0 chr9 6949395 6949696 -135321748 - AluSp SINE Alu -9 304 2 558 280 58 13 chr9 6949856 6950081 -135321363 - AluSg/x SINE Alu -12 300 66 2744 149 30 20 chr9 6950530 6951068 -135320376 + L1MA4 LINE L1 5750 6292 -8 21 0 0 0 chr9 6951068 6951089 -135320355 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 6951894 6951943 -135319501 + AT_rich Low_complexity Low_complexity 1 49 0 2177 130 3 0 chr9 6952081 6952389 -135319055 - AluSx SINE Alu -3 309 1 410 247 55 22 chr9 6952798 6952980 -135318464 - L1MC5 LINE L1 -444 7517 7330 649 208 29 29 chr9 6952995 6953168 -135318276 + MER58B DNA MER1_type 169 341 0 1223 225 143 54 chr9 6953180 6953908 -135317536 - L1MC5 LINE L1 -630 7331 6543 502 221 52 100 chr9 6954614 6954845 -135316599 + L1ME1 LINE L1 5944 6163 -1 594 200 0 17 chr9 6955094 6955209 -135316235 - MLT1F LTR MaLR -85 457 345 763 256 29 33 chr9 6955221 6955463 -135315981 - MLT1F LTR MaLR -301 241 1 1454 295 185 35 chr9 6955878 6957014 -135314430 - L2 LINE L2 -526 2788 1483 181 311 16 0 chr9 6957460 6957521 -135313923 + MIR SINE MIR 180 241 -21 255 343 113 64 chr9 6957576 6957985 -135313459 - L2 LINE L2 -225 3047 2596 2301 103 0 3 chr9 6958396 6958688 -135312756 - AluSp SINE Alu -22 291 1 1916 114 0 11 chr9 6958688 6958951 -135312493 - AluSx SINE Alu -21 291 32 6861 112 12 9 chr9 6959238 6960670 -135310774 + L1MA1 LINE L1 4869 6302 0 1879 218 95 57 chr9 6960687 6961734 -135309710 + L1MD2 LINE L1 5241 6344 -15 2378 95 0 3 chr9 6961737 6962041 -135309403 + AluSx SINE Alu 1 303 -9 1627 207 111 53 chr9 6962763 6963275 -135308169 - MLT1F LTR MaLR 0 542 1 1566 161 4 12 chr9 6963389 6963637 -135307807 + AluJb SINE Alu 1 246 -66 978 282 108 5 chr9 6963719 6964088 -135307356 - MLT1I LTR MaLR -2 407 1 695 221 202 19 chr9 6964143 6964450 -135306994 + L1ME LINE L1 5452 5814 -350 387 245 106 59 chr9 6965310 6965547 -135305897 + L1MC5 LINE L1 7246 7493 -468 2687 23 0 0 chr9 6965587 6965887 -135305557 - AluYa5 SINE Alu -11 300 1 232 218 149 0 chr9 6966072 6966159 -135305285 - L1ME LINE L1 -385 5736 5637 22 35 0 0 chr9 6966200 6966229 -135305215 + AT_rich Low_complexity Low_complexity 1 29 0 920 236 6 0 chr9 6966352 6966534 -135304910 + MER58A DNA MER1_type 42 224 0 21 0 0 0 chr9 6966536 6966557 -135304887 + AT_rich Low_complexity Low_complexity 1 21 0 2229 115 0 0 chr9 6966852 6967140 -135304304 + AluSg SINE Alu 1 288 -22 2114 119 7 3 chr9 6967215 6967510 -135303934 + AluSp SINE Alu 1 296 -17 1851 158 3 3 chr9 6967686 6967983 -135303461 - AluSx SINE Alu -13 299 3 22 0 0 0 chr9 6967985 6968007 -135303437 + AT_rich Low_complexity Low_complexity 1 22 0 909 256 105 49 chr9 6968067 6969019 -135302425 - L1ME LINE L1 -402 5751 4742 388 320 99 6 chr9 6969115 6969427 -135302017 - L1ME LINE L1 -1800 4329 3989 916 264 160 11 chr9 6969435 6969955 -135301489 - L1ME LINE L1 -2381 3748 3152 1044 118 0 0 chr9 6970334 6970470 -135300974 + AluSq/x SINE Alu 1 136 -177 2217 127 0 6 chr9 6970471 6970785 -135300659 + AluSx SINE Alu 1 312 0 576 259 73 54 chr9 6970947 6971220 -135300224 + L2 LINE L2 2864 3145 -168 1719 203 97 32 chr9 6971220 6971694 -135299750 - MLT1D LTR MaLR 0 505 1 576 259 73 54 chr9 6971694 6971733 -135299711 + L2 LINE L2 3145 3182 -131 198 0 0 0 chr9 6971809 6971831 -135299613 + (T)n Simple_repeat Simple_repeat 1 22 0 252 339 15 31 chr9 6971950 6972080 -135299364 - L1ME LINE L1 -5553 566 439 562 248 29 79 chr9 6973517 6973764 -135297680 - L1MC5 LINE L1 -37 7924 7691 1613 205 0 3 chr9 6973764 6974061 -135297383 + AluJb SINE Alu 1 296 -16 562 248 29 79 chr9 6974061 6974091 -135297353 - L1MC5 LINE L1 -270 7691 7661 255 221 91 0 chr9 6974138 6974215 -135297229 - U13 snRNA snRNA -2 102 19 32 86 0 0 chr9 6974550 6974631 -135296813 + AT_rich Low_complexity Low_complexity 1 81 0 180 262 119 32 chr9 6974683 6974809 -135296635 - MIR SINE MIR -55 153 17 216 163 0 0 chr9 6974928 6974971 -135296473 + A-rich Low_complexity Low_complexity 1 43 0 304 204 11 45 chr9 6975178 6975266 -135296178 + MIR SINE MIR 96 180 -82 223 57 86 0 chr9 6975367 6975402 -135296042 + L2 LINE L2 3017 3054 -259 189 0 0 0 chr9 6975995 6976016 -135295428 + (TC)n Simple_repeat Simple_repeat 2 22 0 2293 114 0 3 chr9 6976371 6976678 -135294766 + AluSx SINE Alu 2 307 -5 23 33 0 0 chr9 6977090 6977120 -135294324 + AT_rich Low_complexity Low_complexity 1 30 0 2243 116 0 0 chr9 6977177 6977479 -135293965 + AluSg SINE Alu 2 303 -7 1881 138 0 28 chr9 6977490 6977781 -135293663 + AluSx SINE Alu 1 283 -29 2387 103 0 0 chr9 6978376 6978678 -135292766 + AluSq SINE Alu 1 302 -11 26 30 0 0 chr9 6978693 6978726 -135292718 + AT_rich Low_complexity Low_complexity 1 33 0 258 280 49 21 chr9 6978890 6979033 -135292411 + L1M4 LINE L1 4599 4745 -1401 2733 167 5 92 chr9 6979034 6979608 -135291836 - MER44D DNA MER2_type 0 605 27 1468 213 119 20 chr9 6979618 6980065 -135291379 + L1M4 LINE L1 4744 5234 -912 387 291 17 26 chr9 6980548 6980665 -135290779 + LTR67 LTR ERVL 432 547 -10 420 129 0 0 chr9 6980933 6980995 -135290449 + AluSp SINE Alu 137 198 -115 2010 116 0 34 chr9 6980995 6981287 -135290157 + AluSx SINE Alu 23 304 -8 450 131 7 189 chr9 6981946 6982030 -135289414 + MER5A DNA MER1_type 1 46 -143 1965 103 41 0 chr9 6982030 6982301 -135289143 + AluSx SINE Alu 31 312 0 450 131 7 189 chr9 6982301 6982369 -135289075 + MER5A DNA MER1_type 46 125 -64 302 233 103 43 chr9 6982574 6982690 -135288754 + MER117 DNA MER1_type 53 175 -22 1199 128 0 22 chr9 6982857 6983037 -135288407 + AluSg/x SINE Alu 134 309 -3 440 227 0 42 chr9 6983055 6983174 -135288270 - MER5B DNA MER1_type -64 114 1 968 181 39 6 chr9 6983182 6983364 -135288080 + MER5A DNA MER1_type 2 189 0 1779 171 6 16 chr9 6983938 6984253 -135287191 - MLT1A1 LTR MaLR 0 365 54 1363 106 5 0 chr9 6984259 6984448 -135286996 - AluSq SINE Alu -1 312 123 253 278 195 73 chr9 6985135 6985291 -135286153 + MIR SINE MIR 33 221 -41 2197 115 3 13 chr9 6985291 6985603 -135285841 + AluSq SINE Alu 1 309 -4 253 278 195 73 chr9 6985603 6985651 -135285793 + MIR SINE MIR 221 262 0 495 273 67 70 chr9 6985888 6986116 -135285328 + MLT1J LTR MaLR 1 229 -282 2426 97 0 3 chr9 6986116 6986426 -135285018 - AluSx SINE Alu -3 309 1 495 273 67 70 chr9 6986426 6986553 -135284891 + MLT1J LTR MaLR 229 355 -156 2193 125 3 0 chr9 6987953 6988249 -135283195 + AluSp SINE Alu 1 297 -16 2156 67 103 0 chr9 6988307 6988589 -135282855 + AluY SINE Alu 1 311 0 418 298 123 21 chr9 6990688 6991111 -135280333 + L1ME4a LINE L1 5635 6100 -21 200 139 0 28 chr9 6991196 6991232 -135280212 - MIR SINE MIR -110 152 118 1679 177 42 0 chr9 6991407 6991695 -135279749 - AluJb SINE Alu -12 300 1 201 255 0 0 chr9 6991766 6991813 -135279631 - MER5A DNA MER1_type 0 189 143 253 317 67 29 chr9 6991854 6991873 -135279571 - L1MC4 LINE L1 -1 8041 8024 1894 155 3 20 chr9 6991873 6992170 -135279274 + AluJb SINE Alu 1 292 -20 253 317 67 29 chr9 6992170 6992358 -135279086 - L1MC4 LINE L1 -18 8024 7826 404 202 1 0 chr9 6992400 6992482 -135278962 - L1ME2 LINE L1 -22 6140 6058 243 304 89 0 chr9 6992599 6992711 -135278733 + MER5A DNA MER1_type 43 164 -25 243 282 39 13 chr9 6992643 6992721 -135278723 - MER5A DNA MER1_type -85 104 25 251 109 43 0 chr9 6992916 6992962 -135278482 - L2 LINE L2 -2 3311 3264 2053 127 0 3 chr9 6993572 6993855 -135277589 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr9 6993882 6993903 -135277541 + AT_rich Low_complexity Low_complexity 1 21 0 227 132 26 0 chr9 6995211 6995249 -135276195 - Tigger4(Zombi) DNA MER2_type -2646 85 47 743 210 21 0 chr9 6995252 6995395 -135276049 + AluSq/x SINE Alu 2 147 -165 565 143 0 11 chr9 6995395 6995486 -135275958 + AluJb SINE Alu 210 299 -3 1991 136 3 17 chr9 6995917 6996218 -135275226 + AluSx SINE Alu 1 297 -15 2367 85 0 0 chr9 6996336 6996629 -135274815 + AluSc SINE Alu 1 293 -16 1800 138 14 18 chr9 6996629 6996912 -135274532 - AluJb SINE Alu -28 284 3 1954 167 3 3 chr9 6996980 6997286 -135274158 + AluJb SINE Alu 1 306 -6 1381 185 8 0 chr9 6997426 6997664 -135273780 + AluJo SINE Alu 56 295 -17 210 239 120 35 chr9 6999298 6999440 -135272004 + L2 LINE L2 2725 2878 -436 2321 117 0 0 chr9 6999762 7000071 -135271373 + AluSx SINE Alu 1 309 -3 255 273 112 25 chr9 7001304 7001465 -135269979 - MER5B DNA MER1_type 0 178 4 1973 128 3 72 chr9 7004904 7005239 -135266205 + AluSx SINE Alu 1 312 0 183 218 109 0 chr9 7005372 7005427 -135266017 - MIR SINE MIR -61 147 87 2264 121 0 3 chr9 7005928 7006241 -135265203 + AluSx SINE Alu 1 312 0 1584 94 49 8 chr9 7006475 7006720 -135264724 + L1MA5A LINE L1 6040 6294 -3 2359 94 0 3 chr9 7006731 7007038 -135264406 + AluSc SINE Alu 1 306 -3 2378 100 0 0 chr9 7008650 7008959 -135262485 + AluSq SINE Alu 1 309 -4 2107 96 55 17 chr9 7008968 7009260 -135262184 + AluSg SINE Alu 1 303 -7 22 0 0 0 chr9 7010054 7010076 -135261368 + AT_rich Low_complexity Low_complexity 1 22 0 2064 187 85 13 chr9 7010153 7010624 -135260820 + MLT1D LTR MaLR 1 505 0 2071 139 0 0 chr9 7010785 7011079 -135260365 + AluSx SINE Alu 1 294 -18 184 290 48 0 chr9 7011565 7011627 -135259817 + MIR SINE MIR 193 257 -5 2236 104 0 3 chr9 7011987 7012276 -135259168 - AluSx SINE Alu -21 291 4 183 255 106 43 chr9 7013140 7013234 -135258210 + L2 LINE L2 3173 3272 0 368 242 53 11 chr9 7013272 7013367 -135258077 + FRAM SINE Alu 1 99 -67 2359 97 0 7 chr9 7013382 7013682 -135257762 + AluSx SINE Alu 1 298 -14 238 232 91 40 chr9 7014320 7014419 -135257025 - L2 LINE L2 0 3313 3210 22 35 0 0 chr9 7017960 7017989 -135253455 + AT_rich Low_complexity Low_complexity 1 29 0 1803 165 17 3 chr9 7018900 7019197 -135252247 - AluJb SINE Alu -11 301 1 471 306 97 26 chr9 7021062 7021341 -135250103 + L2 LINE L2 2776 3082 -231 650 188 20 0 chr9 7021366 7021467 -135249977 - FLAM_A SINE Alu -28 114 12 279 269 185 0 chr9 7021468 7021598 -135249846 + L2 LINE L2 3113 3266 -47 1861 140 3 7 chr9 7021878 7022187 -135249257 - AluSx SINE Alu 0 308 1 23 33 0 0 chr9 7022198 7022228 -135249216 + AT_rich Low_complexity Low_complexity 1 30 0 2498 71 0 0 chr9 7022907 7023216 -135248228 - AluY SINE Alu -2 309 1 779 186 76 0 chr9 7023249 7023421 -135248023 - L1MA4 LINE L1 -6 6294 6110 180 219 0 0 chr9 7024160 7024201 -135247243 + (TA)n Simple_repeat Simple_repeat 2 42 0 1836 160 7 3 chr9 7024201 7024488 -135246956 - AluSx SINE Alu -24 288 1 240 299 43 43 chr9 7024667 7024784 -135246660 - MIR SINE MIR -116 146 30 1901 122 3 24 chr9 7026109 7026405 -135245039 - AluSq SINE Alu -23 290 1 2825 220 73 19 chr9 7026405 7027437 -135244007 - L1MDa LINE L1 -4399 2141 901 321 278 179 77 chr9 7027731 7027965 -135243479 - L1MDa LINE L1 -6129 411 154 1991 120 0 11 chr9 7028130 7028441 -135243003 - AluSc SINE Alu 0 308 1 2031 118 54 0 chr9 7028692 7028988 -135242456 + AluSq SINE Alu 1 312 -1 10082 46 2 11 chr9 7029323 7031291 -135240153 - L1PA5 LINE L1 -1 6153 4197 1643 131 14 137 chr9 7031517 7031731 -135239713 - AluYb8 SINE Alu 0 308 152 2410 60 10 7 chr9 7031731 7032031 -135239413 - AluY SINE Alu -10 301 1 1643 131 14 137 chr9 7032031 7032167 -135239277 - AluYb8 SINE Alu -156 152 1 531 253 145 60 chr9 7032189 7032924 -135238520 - L1MEd LINE L1 -839 1651 754 2061 112 4 0 chr9 7033379 7033675 -135237769 - AluSg SINE Alu 0 299 3 331 280 60 0 chr9 7034041 7034141 -135237303 - MIR SINE MIR -108 154 49 802 137 8 8 chr9 7034273 7034404 -135237040 + FLAM_C SINE Alu 1 131 -12 1977 110 0 55 chr9 7034518 7034872 -135236572 - AluSx SINE Alu 0 312 1 2165 79 3 60 chr9 7034883 7035200 -135236244 - AluY SINE Alu -12 299 1 1615 197 14 0 chr9 7035425 7035709 -135235735 + AluJb SINE Alu 9 296 -16 1464 93 67 44 chr9 7036650 7036772 -135234672 + MER30 DNA MER1_type 1 132 -98 2131 127 0 3 chr9 7036772 7037072 -135234372 - AluSx SINE Alu -13 299 1 1464 93 67 44 chr9 7037072 7037174 -135234270 + MER30 DNA MER1_type 132 230 0 2236 123 0 0 chr9 7037801 7038102 -135233342 - AluSx SINE Alu -11 301 1 400 187 44 0 chr9 7038965 7039056 -135232388 + L1MB4 LINE L1 6081 6175 -5 429 100 50 10 chr9 7039123 7039223 -135232221 + (TA)n Simple_repeat Simple_repeat 2 105 0 2160 122 7 0 chr9 7039391 7039694 -135231750 - AluSx SINE Alu -7 305 1 2360 106 0 3 chr9 7039705 7040017 -135231427 - AluSx SINE Alu -1 311 1 324 228 0 0 chr9 7040018 7040075 -135231369 - MLT1A2 LTR MaLR -317 57 1 236 261 100 39 chr9 7040807 7040937 -135230507 - HAL1b LINE L1 -8 1340 1203 255 288 45 0 chr9 7041063 7041174 -135230270 - L1 LINE L1 -2990 3156 3041 1154 180 48 0 chr9 7041174 7041380 -135230064 - AluJo SINE Alu -10 302 87 301 125 42 0 chr9 7041380 7041428 -135230016 - Alu SINE Alu -8 294 245 312 312 71 7 chr9 7041539 7041680 -135229764 - L1M4 LINE L1 -2932 3214 3065 763 180 47 0 chr9 7041872 7042000 -135229444 - AluJo SINE Alu -176 136 3 3388 141 37 8 chr9 7042594 7043104 -135228340 + LTR45 LTR ERV1 1 525 0 258 322 76 64 chr9 7043361 7043532 -135227912 + LTR16C LTR ERVL 78 250 -241 885 272 35 31 chr9 7043537 7043827 -135227617 + LTR16C LTR ERVL 201 491 0 5114 157 14 34 chr9 7044192 7044283 -135227161 + L1MB3 LINE L1 5173 5264 -919 2211 122 3 0 chr9 7044283 7044587 -135226857 + AluSx SINE Alu 1 305 -7 2078 116 0 7 chr9 7044587 7044880 -135226564 + AluSx SINE Alu 1 292 -20 5114 157 14 34 chr9 7044880 7044897 -135226547 + L1MB3 LINE L1 5263 5279 -904 2531 53 0 0 chr9 7044897 7045196 -135226248 + AluY SINE Alu 1 299 -12 5114 157 14 34 chr9 7045196 7045742 -135225702 + L1MB3 LINE L1 5279 5807 -376 1737 179 0 3 chr9 7045742 7046039 -135225405 + AluJb SINE Alu 1 296 -16 5114 157 14 34 chr9 7046039 7046407 -135225037 + L1MB3 LINE L1 5807 6181 -2 695 145 36 114 chr9 7047327 7047520 -135223924 - MER5B DNA MER1_type 0 178 1 259 208 14 69 chr9 7047999 7048071 -135223373 - MER5A DNA MER1_type -113 76 9 366 85 0 0 chr9 7048182 7048241 -135223203 + (TATG)n Simple_repeat Simple_repeat 2 60 0 479 196 101 101 chr9 7048299 7048363 -135223081 - MER5A DNA MER1_type 0 189 126 2388 93 3 0 chr9 7048363 7048675 -135222769 + AluSp SINE Alu 1 313 0 479 196 101 101 chr9 7048675 7048799 -135222645 - MER5A DNA MER1_type -62 127 1 202 276 207 11 chr9 7048819 7048906 -135222538 - MIR SINE MIR -68 140 37 680 277 62 56 chr9 7048979 7049468 -135221976 + MLT1G1 LTR MaLR 1 549 0 208 269 0 0 chr9 7049668 7049720 -135221724 + (TAA)n Simple_repeat Simple_repeat 3 54 0 567 252 49 0 chr9 7049723 7049866 -135221578 - MIR SINE MIR -29 233 84 595 208 8 54 chr9 7050032 7050162 -135221282 + FLAM_A SINE Alu 1 124 -9 29 0 0 0 chr9 7050519 7050548 -135220896 + AT_rich Low_complexity Low_complexity 1 29 0 267 31 0 0 chr9 7051757 7051789 -135219655 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1703 166 18 3 chr9 7051792 7052076 -135219368 - AluJb SINE Alu -24 288 1 2435 78 0 10 chr9 7052365 7052673 -135218771 - AluSq SINE Alu -8 305 1 232 122 73 0 chr9 7053183 7053224 -135218220 + MER57A LTR ERV1 295 338 -65 1586 205 3 10 chr9 7053245 7053548 -135217896 + AluJb SINE Alu 5 305 -7 2209 97 10 0 chr9 7053616 7053916 -135217528 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 7053974 7054003 -135217441 + AT_rich Low_complexity Low_complexity 1 29 0 755 168 0 8 chr9 7054003 7054122 -135217322 - FLAM_C SINE Alu -15 118 1 4080 173 43 8 chr9 7054180 7054932 -135216512 - L1MB7 LINE L1 -16 6168 5391 797 176 0 0 chr9 7054972 7055103 -135216341 - FLAM_C SINE Alu -3 140 10 750 199 27 20 chr9 7055742 7055888 -135215556 - FRAM SINE Alu -30 146 1 661 153 6 6 chr9 7056715 7056878 -135214566 + CT-rich Low_complexity Low_complexity 3 165 0 1919 148 4 0 chr9 7056879 7057157 -135214287 - AluSx SINE Alu -33 279 1 254 253 99 49 chr9 7057267 7057429 -135214015 + L1MC/D LINE L1 5309 5478 -2330 699 209 16 0 chr9 7057447 7057576 -135213868 + FLAM_A SINE Alu 1 131 -2 2308 113 0 0 chr9 7057578 7057879 -135213565 + AluSx SINE Alu 1 301 -11 1616 188 7 36 chr9 7057969 7058273 -135213171 + AluJo SINE Alu 1 295 -17 27 0 0 0 chr9 7058275 7058302 -135213142 + AT_rich Low_complexity Low_complexity 1 27 0 2176 116 3 22 chr9 7059680 7059999 -135211445 + AluSp SINE Alu 1 313 0 1647 177 10 35 chr9 7060333 7060644 -135210800 + AluJo SINE Alu 1 303 -9 1790 169 23 10 chr9 7060644 7060951 -135210493 + AluSx SINE Alu 1 312 0 2231 117 0 0 chr9 7061141 7061440 -135210004 + AluSg SINE Alu 1 299 -11 1597 178 0 21 chr9 7061893 7062179 -135209265 - AluJb SINE Alu -32 280 1 216 97 0 0 chr9 7062268 7062299 -135209145 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2094 80 88 0 chr9 7062626 7062900 -135208544 - AluSx SINE Alu -13 299 2 270 244 178 39 chr9 7063096 7063194 -135208250 - MER2 DNA MER2_type -16 329 246 2289 118 0 0 chr9 7063194 7063500 -135207944 + AluSx SINE Alu 1 306 -6 270 244 178 39 chr9 7063500 7063581 -135207863 - MER2 DNA MER2_type -99 246 125 857 186 48 14 chr9 7063583 7063728 -135207716 + AluJb SINE Alu 2 151 -161 344 164 14 82 chr9 7063721 7063781 -135207663 + AluS SINE Alu 223 279 -23 * 244 0 0 0 chr9 7063781 7063808 -135207636 + (TAAA)n Simple_repeat Simple_repeat 2 144 0 344 164 14 82 chr9 7063808 7063820 -135207624 + AluS SINE Alu 279 290 -12 2204 120 3 0 chr9 7063967 7064276 -135207168 - AluSg SINE Alu 0 310 1 201 74 0 0 chr9 7064277 7064304 -135207140 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 298 170 0 0 chr9 7065161 7065208 -135206236 - L2 LINE L2 0 3313 3267 2246 77 0 10 chr9 7066274 7066587 -135204857 + AluY SINE Alu 1 310 -1 1958 87 37 24 chr9 7067039 7067337 -135204107 + AluSq SINE Alu 1 302 -11 1923 114 4 0 chr9 7067549 7067869 -135203575 + AluSx SINE Alu 1 321 0 907 158 0 74 chr9 7067873 7068075 -135203369 - AluJb SINE Alu -2 310 124 1710 168 21 0 chr9 7068089 7068375 -135203069 + AluJb SINE Alu 1 292 -20 2274 72 0 28 chr9 7068380 7068700 -135202744 + AluY SINE Alu 1 311 0 2177 59 0 21 chr9 7068707 7069046 -135202398 + AluY SINE Alu 1 333 0 331 224 0 0 chr9 7069459 7069526 -135201918 + L1ME LINE L1 5619 5685 -436 845 75 17 0 chr9 7069643 7069763 -135201681 + AluSp/q SINE Alu 181 302 -11 1381 96 0 10 chr9 7069763 7069960 -135201484 + AluY SINE Alu 1 195 -116 642 0 0 0 chr9 7069960 7070031 -135201413 + AluY SINE Alu 62 132 -179 1956 115 0 3 chr9 7070035 7070331 -135201113 + AluY SINE Alu 1 295 -16 2345 34 7 17 chr9 7070337 7070665 -135200779 + AluY SINE Alu 1 311 0 373 200 44 11 chr9 7071248 7071338 -135200106 - MIR SINE MIR -121 141 49 1587 169 0 44 chr9 7071472 7071791 -135199653 + AluJb SINE Alu 1 305 -7 826 224 0 0 chr9 7071842 7072007 -135199437 + FRAM SINE Alu 1 164 -12 1818 99 4 4 chr9 7072009 7072272 -135199172 + AluSq SINE Alu 1 263 -50 2113 104 0 3 chr9 7072718 7073016 -135198428 - AluSx SINE Alu -15 297 1 525 220 135 21 chr9 7073016 7073157 -135198287 - FRAM SINE Alu -13 163 7 1973 259 96 31 chr9 7073173 7073441 -135198003 + L2 LINE L2 2005 2254 -1060 2045 129 0 0 chr9 7073441 7073752 -135197692 - AluY SINE Alu 0 311 1 1973 259 96 31 chr9 7073752 7074246 -135197198 + L2 LINE L2 2254 2816 -498 597 244 65 57 chr9 7074251 7074481 -135196963 - LTR33 LTR ERVL -2 519 288 273 193 0 0 chr9 7074589 7074646 -135196798 + Alu SINE Alu 245 301 -1 195 42 0 0 chr9 7074900 7074924 -135196520 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1973 131 3 3 chr9 7075078 7075375 -135196069 - AluSp SINE Alu -16 297 1 2340 81 0 7 chr9 7075375 7075682 -135195762 - AluSx SINE Alu -7 305 1 474 18 0 0 chr9 7075688 7075743 -135195701 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1872 101 4 0 chr9 7075747 7076004 -135195440 - AluSx SINE Alu -32 280 23 1853 136 3 7 chr9 7076012 7076327 -135195117 - AluSx SINE Alu 0 314 1 2161 84 3 0 chr9 7076859 7077178 -135194266 - AluSx SINE Alu 0 320 1 1319 209 17 24 chr9 7077186 7077482 -135193962 - AluJo SINE Alu -18 294 1 966 201 14 5 chr9 7077490 7077699 -135193745 - AluJb SINE Alu 0 312 102 565 147 147 0 chr9 7077699 7077801 -135193643 + FLAM_C SINE Alu 1 117 -26 1882 154 0 3 chr9 7077814 7078125 -135193319 - AluJb SINE Alu -2 310 1 606 213 12 50 chr9 7078302 7078453 -135192991 + AluJb SINE Alu 157 303 -9 1691 169 23 10 chr9 7078453 7078761 -135192683 + AluSx SINE Alu 1 312 0 2276 93 0 0 chr9 7078951 7079253 -135192191 + AluSg1 SINE Alu 1 302 -7 484 240 260 24 chr9 7079253 7079461 -135191983 + Zaphod DNA AcHobo 383 639 -3392 2191 99 3 3 chr9 7079461 7079763 -135191681 + AluSx SINE Alu 1 302 -10 1304 53 0 6 chr9 7079818 7079987 -135191457 + AluY SINE Alu 136 303 -8 252 231 15 0 chr9 7080009 7080074 -135191370 + Zaphod DNA AcHobo 663 728 -3303 1988 119 10 0 chr9 7080074 7080369 -135191075 + AluSx SINE Alu 1 298 -14 2189 179 87 50 chr9 7080378 7080837 -135190607 + MER21A LTR ERV1 386 861 -70 986 186 6 0 chr9 7080837 7081020 -135190424 - AluSg/x SINE Alu -8 304 121 569 168 71 9 chr9 7081296 7081409 -135190035 + FLAM_C SINE Alu 12 131 -12 23 0 0 0 chr9 7081438 7081461 -135189983 + AT_rich Low_complexity Low_complexity 1 23 0 2089 109 0 7 chr9 7081465 7081759 -135189685 - AluSc SINE Alu -17 292 1 2252 74 0 0 chr9 7081764 7082072 -135189372 - AluY SINE Alu 0 308 1 893 186 47 131 chr9 7082078 7082438 -135189006 + MER34C LTR ERV1 256 585 0 1950 128 3 7 chr9 7082557 7082854 -135188590 - AluSx SINE Alu -16 296 1 2404 70 3 0 chr9 7083944 7084246 -135187198 - AluSx SINE Alu -9 303 1 207 0 0 0 chr9 7084258 7084281 -135187163 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2037 105 7 0 chr9 7084458 7084744 -135186700 - AluSg SINE Alu -21 289 2 2034 111 0 26 chr9 7084949 7085255 -135186189 - AluSx SINE Alu -14 298 1 23 33 0 0 chr9 7085961 7085991 -135185453 + AT_rich Low_complexity Low_complexity 1 30 0 1223 167 77 42 chr9 7086198 7086485 -135184959 + AluJo SINE Alu 1 297 -15 1818 142 10 10 chr9 7086505 7086801 -135184643 - AluSx SINE Alu -16 296 1 870 229 0 0 chr9 7086811 7086986 -135184458 - FAM SINE Alu 0 175 1 1140 107 6 0 chr9 7089234 7089393 -135182051 - AluSp SINE Alu -51 262 103 195 42 0 0 chr9 7089852 7089876 -135181568 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2131 105 13 0 chr9 7089880 7090186 -135181258 - AluSx SINE Alu -2 310 1 1675 179 3 3 chr9 7090742 7091054 -135180390 + AluJo SINE Alu 1 312 0 2181 105 0 3 chr9 7091384 7091689 -135179755 - AluSx SINE Alu -4 308 5 902 282 49 8 chr9 7092202 7092447 -135178997 - MIR SINE MIR 0 262 8 227 280 28 28 chr9 7092979 7093086 -135178358 + L1ME4a LINE L1 5967 6073 -48 2371 178 93 8 chr9 7093726 7094232 -135177212 - MER89 LTR ERV1 -10 549 1 261 0 0 0 chr9 7094252 7094281 -135177163 + (TA)n Simple_repeat Simple_repeat 1 29 0 208 232 131 50 chr9 7094886 7094929 -135176515 - L2 LINE L2 -15 3298 3260 2239 99 0 0 chr9 7094929 7095223 -135176221 - AluSg SINE Alu -14 296 3 208 232 131 50 chr9 7095223 7095278 -135176166 - L2 LINE L2 -53 3260 3192 2100 102 9 19 chr9 7095439 7095754 -135175690 + AluSx SINE Alu 1 312 0 2190 99 0 13 chr9 7096161 7096475 -135174969 + AluSg SINE Alu 1 310 0 2109 92 0 0 chr9 7096745 7097026 -135174418 + AluSx SINE Alu 1 281 -31 1611 171 3 13 chr9 7098194 7098493 -135172951 + AluSx SINE Alu 10 305 -7 2276 85 0 0 chr9 7098821 7099115 -135172329 - AluSg SINE Alu -16 294 1 372 22 0 0 chr9 7099446 7099491 -135171953 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 42 0 0 chr9 7099539 7099563 -135171881 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 10861 28 20 31 chr9 7099568 7100931 -135170513 + SVA Other Other 38 1385 -1 1856 199 97 21 chr9 7101493 7101924 -135169520 + MLT1C LTR MaLR 1 464 -3 2129 99 0 3 chr9 7102008 7102301 -135169143 + AluSx SINE Alu 5 296 -16 2428 60 0 3 chr9 7104312 7104613 -135166831 + AluY SINE Alu 1 300 -11 747 114 21 6 chr9 7105806 7106051 -135165393 + AluJ SINE Alu 1 294 -18 1927 75 20 0 chr9 7106520 7106774 -135164670 - AluSq SINE Alu -16 297 39 25 0 0 0 chr9 7107100 7107125 -135164319 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr9 7107226 7107249 -135164195 + (TA)n Simple_repeat Simple_repeat 2 24 0 908 132 0 22 chr9 7107251 7107387 -135164057 - FLAM_C SINE Alu 0 133 1 969 91 0 0 chr9 7107457 7107589 -135163855 + AluY SINE Alu 173 304 -7 1442 156 31 28 chr9 7109082 7109371 -135162073 + AluJo SINE Alu 1 290 -22 187 355 106 23 chr9 7110589 7110854 -135160590 + L2 LINE L2 2140 2426 -888 271 261 0 0 chr9 7110872 7110937 -135160507 + LTR16B LTR ERVL 54 118 -346 435 193 45 0 chr9 7110939 7111027 -135160417 + AluS SINE Alu 2 93 -220 631 167 135 26 chr9 7111031 7111187 -135160257 + L1ME3A LINE L1 5693 5865 -305 464 154 0 0 chr9 7112472 7112537 -135158907 - HERVL18 LTR ERVL -3265 2782 2718 * 1206 155 64 2 chr9 7112534 7112794 -135158650 - HERVL18 LTR ERVL -3595 2452 2119 2728 196 14 26 chr9 7112819 7113698 -135157746 - HERVL18 LTR ERVL -4425 1622 56 1205 135 5 25 chr9 7113799 7113999 -135157445 - AluSx SINE Alu -116 196 1 1822 95 91 18 chr9 7114712 7114986 -135156458 + AluSc SINE Alu 2 295 -14 2247 101 13 7 chr9 7116174 7116480 -135154964 - AluSx SINE Alu 0 312 5 1482 197 4 4 chr9 7117038 7117317 -135154127 + AluJo SINE Alu 1 279 -33 360 259 2 0 chr9 7117530 7117620 -135153824 - AluJ/FLAM SINE Alu -227 75 1 2452 86 3 0 chr9 7117737 7118038 -135153406 + AluSp SINE Alu 1 302 -11 1195 38 0 0 chr9 7118038 7118170 -135153274 + AluY SINE Alu 1 132 -179 2363 71 0 7 chr9 7118174 7118471 -135152973 + AluY SINE Alu 1 295 -16 2230 42 46 18 chr9 7118471 7118788 -135152656 + AluY SINE Alu 1 311 0 372 200 44 11 chr9 7119371 7119461 -135151983 - MIR SINE MIR -121 141 49 1785 163 0 44 chr9 7119595 7119914 -135151530 + AluJb SINE Alu 1 305 -7 927 218 0 0 chr9 7119965 7120130 -135151314 + FRAM SINE Alu 1 164 -12 353 64 0 0 chr9 7120132 7120179 -135151265 + Alu SINE Alu 1 47 -255 1560 179 14 7 chr9 7120413 7120703 -135150741 + AluSx SINE Alu 21 312 0 195 42 0 0 chr9 7120706 7120730 -135150714 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr9 7122087 7122116 -135149328 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 7122457 7122480 -135148964 + AT_rich Low_complexity Low_complexity 1 23 0 1120 90 0 0 chr9 7123391 7123525 -135147919 + AluSq/x SINE Alu 1 134 -178 1455 127 5 9 chr9 7123527 7123740 -135147704 + AluSp SINE Alu 1 212 -101 483 240 202 8 chr9 7123756 7123885 -135147559 - AluJo SINE Alu -38 274 121 524 44 15 0 chr9 7123885 7123953 -135147491 - L1PA8 LINE L1 -319 5853 5785 1966 166 44 70 chr9 7123954 7124272 -135147172 - Tigger7 DNA MER2_type -2062 425 119 2402 89 10 0 chr9 7124272 7124576 -135146868 + AluSp SINE Alu 1 307 -6 1966 166 44 70 chr9 7124576 7124685 -135146759 - Tigger7 DNA MER2_type -2368 119 9 366 310 84 0 chr9 7124709 7124864 -135146580 - L1MCb LINE L1 -5308 737 570 459 286 34 7 chr9 7124956 7125103 -135146341 - L1MCb LINE L1 -5471 574 424 264 176 0 44 chr9 7125105 7125173 -135146271 - L1MCb LINE L1 -5772 273 209 2090 134 0 0 chr9 7125204 7125495 -135145949 - AluSx SINE Alu -8 304 14 404 182 0 0 chr9 7125500 7125577 -135145867 - AluJ/FRAM SINE Alu -7 305 229 684 61 0 0 chr9 7125677 7125759 -135145685 - AluY SINE Alu -228 83 2 * 757 164 16 0 chr9 7125759 7125878 -135145566 + AluSg/x SINE Alu 183 303 -9 1684 162 4 0 chr9 7125893 7126197 -135145247 + AluJb SINE Alu 16 320 0 891 280 15 19 chr9 7126202 7126470 -135144974 + LTR16B LTR ERVL 109 375 -89 181 347 27 0 chr9 7126651 7126726 -135144718 + L2 LINE L2 2872 2948 -324 409 256 0 0 chr9 7127130 7127216 -135144228 + FRAM SINE Alu 77 162 -14 1453 226 7 13 chr9 7127222 7127532 -135143912 + AluJb SINE Alu 3 310 -2 1348 151 29 59 chr9 7127555 7127652 -135143792 + L1MC1 LINE L1 6059 6157 -176 2203 115 7 3 chr9 7127652 7127947 -135143497 + AluSx SINE Alu 1 296 -16 1348 151 29 59 chr9 7127947 7128121 -135143323 + L1MC1 LINE L1 6157 6322 -11 1926 150 10 10 chr9 7128122 7128422 -135143022 + AluJo SINE Alu 1 300 -12 2119 110 0 0 chr9 7128433 7128706 -135142738 + AluSx SINE Alu 3 275 -37 2025 97 6 61 chr9 7128736 7129047 -135142397 + AluSq SINE Alu 3 296 -17 1948 144 6 52 chr9 7129069 7129395 -135142049 - AluSx SINE Alu -1 311 1 725 124 66 25 chr9 7129483 7129604 -135141840 - FLAM_C SINE Alu -4 139 14 1985 153 3 16 chr9 7130083 7130396 -135141048 + AluSx SINE Alu 1 309 -3 1012 207 195 0 chr9 7130726 7130987 -135140457 + MER21B LTR ERV1 1 312 -551 1122 82 0 0 chr9 7130988 7131123 -135140321 + AluSq/x SINE Alu 1 135 -177 2441 77 0 0 chr9 7131123 7131423 -135140021 + AluY SINE Alu 1 300 -11 2226 168 85 78 chr9 7131429 7131888 -135139556 + MER21A LTR ERV1 386 851 -80 1979 148 3 23 chr9 7131888 7132198 -135139246 - AluSx SINE Alu -8 304 1 2226 168 85 78 chr9 7132198 7132280 -135139164 + MER21A LTR ERV1 851 931 0 2157 68 79 7 chr9 7132442 7132722 -135138722 - AluSp SINE Alu -13 300 1 2293 109 0 0 chr9 7132821 7133115 -135138329 - AluSg SINE Alu -15 295 2 194 125 0 25 chr9 7133166 7133206 -135138238 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 2058 117 11 3 chr9 7133281 7133590 -135137854 + AluSx SINE Alu 1 311 0 388 174 315 0 chr9 7133656 7133748 -135137696 + FLAM_A SINE Alu 1 121 -12 37 0 0 0 chr9 7133969 7134006 -135137438 + AT_rich Low_complexity Low_complexity 1 37 0 888 206 11 29 chr9 7134006 7134145 -135137299 + AluJo SINE Alu 1 138 -174 2479 78 0 0 chr9 7134145 7134440 -135137004 + AluSx SINE Alu 1 295 -17 888 206 11 29 chr9 7134440 7134475 -135136969 + AluJo SINE Alu 138 172 -140 253 200 55 0 chr9 7134483 7134538 -135136906 + FAM SINE Alu 116 173 -2 2182 125 0 0 chr9 7134540 7134837 -135136607 + AluSx SINE Alu 2 298 -14 827 135 0 8 chr9 7134838 7135006 -135136438 + FLAM_C SINE Alu 1 167 0 817 303 135 53 chr9 7135199 7135538 -135135906 + ERVL LTR ERVL 884 1194 -4460 1941 135 36 30 chr9 7135538 7135842 -135135602 + AluJb SINE Alu 3 308 -4 817 303 135 53 chr9 7135842 7136416 -135135028 + ERVL LTR ERVL 1194 1827 -3827 628 139 0 0 chr9 7136537 7136638 -135134806 + AluSg/x SINE Alu 209 309 0 271 163 24 0 chr9 7136638 7136694 -135134750 + AluY SINE Alu 142 188 -113 768 149 8 22 chr9 7136744 7136878 -135134566 - FLAM_C SINE Alu 0 133 2 2249 115 0 0 chr9 7136887 7137183 -135134261 - AluSq SINE Alu -16 297 2 2495 61 3 0 chr9 7137241 7137534 -135133910 - AluY SINE Alu -17 294 1 886 202 60 101 chr9 7137536 7137902 -135133542 + MER34C LTR ERV1 235 585 0 2144 118 3 7 chr9 7138021 7138317 -135133127 - AluSx SINE Alu -17 295 1 2395 86 3 0 chr9 7139406 7139707 -135131737 - AluSx SINE Alu -10 302 1 207 0 0 0 chr9 7139719 7139742 -135131702 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2175 105 7 0 chr9 7139919 7140205 -135131239 - AluSg SINE Alu -21 289 2 2204 108 0 23 chr9 7140410 7140715 -135130729 - AluSx SINE Alu -14 298 1 264 254 228 9 chr9 7141385 7141499 -135129945 + MIR SINE MIR 82 220 -42 387 60 0 0 chr9 7141544 7141594 -135129850 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1903 139 21 0 chr9 7141634 7141922 -135129522 + AluJb SINE Alu 8 301 -11 1404 14 0 0 chr9 7142074 7142222 -135129222 - AluY SINE Alu -163 148 1 779 251 67 110 chr9 7142725 7142824 -135128620 + MLT1H LTR MaLR 52 154 -395 1946 147 0 0 chr9 7142824 7143110 -135128334 - AluJb SINE Alu -26 286 1 779 251 67 110 chr9 7143110 7143519 -135127925 + MLT1H LTR MaLR 154 538 -11 2279 122 0 0 chr9 7143820 7144115 -135127329 - AluSg SINE Alu -15 295 1 2351 107 3 0 chr9 7144260 7144569 -135126875 - AluSq SINE Alu -3 310 1 1447 150 0 26 chr9 7144577 7144804 -135126640 - AluJo SINE Alu -1 311 91 2193 131 3 0 chr9 7144955 7145260 -135126184 + AluSp SINE Alu 1 306 -7 183 42 0 0 chr9 7145722 7145746 -135125698 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2504 74 3 0 chr9 7145749 7146048 -135125396 - AluSp SINE Alu -13 300 1 1849 146 41 7 chr9 7146056 7146378 -135125066 - AluSx SINE Alu 0 312 1 528 248 101 50 chr9 7146548 7146711 -135124733 + Charlie1 DNA MER1_type 37 213 -2548 2304 81 27 3 chr9 7146711 7147008 -135124436 - AluY SINE Alu -7 304 1 528 248 101 50 chr9 7147008 7147042 -135124402 + Charlie1 DNA MER1_type 213 244 -2517 234 0 0 0 chr9 7147045 7147071 -135124373 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1726 186 0 24 chr9 7147074 7147240 -135124204 - AluJb SINE Alu -23 289 132 2659 36 13 0 chr9 7147240 7147547 -135123897 - AluY SINE Alu 0 311 1 1726 186 0 24 chr9 7147547 7147676 -135123768 - AluJb SINE Alu -180 132 1 2619 39 3 7 chr9 7147705 7148011 -135123433 + AluY SINE Alu 1 305 -6 2094 113 13 17 chr9 7148033 7148169 -135123275 + AluSx SINE Alu 1 136 -176 2295 106 13 0 chr9 7148169 7148471 -135122973 + AluSp SINE Alu 2 307 -6 2094 113 13 17 chr9 7148471 7148634 -135122810 + AluSx SINE Alu 136 299 -13 188 135 27 0 chr9 7148634 7148671 -135122773 + (TATAA)n Simple_repeat Simple_repeat 1 38 0 1522 171 75 0 chr9 7148676 7148957 -135122487 - AluJo SINE Alu 0 302 1 216 111 0 0 chr9 7149273 7149309 -135122135 + (GGA)n Simple_repeat Simple_repeat 3 38 0 702 197 15 29 chr9 7149580 7149717 -135121727 + AluJo SINE Alu 2 136 -176 2361 103 0 3 chr9 7149729 7150029 -135121415 - AluSc SINE Alu -9 300 2 875 168 0 0 chr9 7150226 7150357 -135121087 + FLAM_C SINE Alu 1 131 -2 2017 147 7 3 chr9 7150467 7150774 -135120670 + AluSx SINE Alu 1 308 -4 186 398 21 0 chr9 7150881 7150974 -135120470 - L2 LINE L2 0 3272 3178 886 129 0 0 chr9 7151247 7151371 -135120073 - AluSg/x SINE Alu -14 296 173 306 177 0 0 chr9 7151530 7151592 -135119852 + AluS SINE Alu 233 294 -8 466 218 44 87 chr9 7151606 7151812 -135119632 + L1MDa LINE L1 1471 1667 -4873 229 195 0 0 chr9 7151812 7151853 -135119591 + MER57A LTR ERV1 296 336 -67 236 286 109 0 chr9 7151864 7151983 -135119461 + L1MDa LINE L1 1638 1769 -4771 737 95 0 0 chr9 7151987 7152082 -135119362 + AluSg SINE Alu 28 122 -188 1725 109 0 0 chr9 7152082 7152311 -135119133 + AluSg/x SINE Alu 82 310 -2 744 154 0 70 chr9 7152406 7152549 -135118895 + FLAM_C SINE Alu 1 133 0 643 221 49 71 chr9 7152589 7152854 -135118590 + L1MDa LINE L1 1860 2119 -4421 2170 118 3 3 chr9 7152854 7153158 -135118286 - AluSc SINE Alu -5 304 1 643 221 49 71 chr9 7153158 7153200 -135118244 + L1MDa LINE L1 2119 2160 -4380 1768 135 12 0 chr9 7153200 7153445 -135117999 + AluSg SINE Alu 50 297 -13 2216 126 0 0 chr9 7153455 7153756 -135117688 + AluSx SINE Alu 1 301 -11 2400 70 0 0 chr9 7153771 7154079 -135117365 + AluY SINE Alu 1 308 0 2284 116 0 6 chr9 7154084 7154395 -135117049 + AluSc SINE Alu 1 309 0 671 156 57 8 chr9 7154426 7154548 -135116896 - FLAM_C SINE Alu -4 139 12 2075 139 0 0 chr9 7154901 7155196 -135116248 + AluSx SINE Alu 1 295 -17 1510 135 0 91 chr9 7155234 7155389 -135116055 + AluJb SINE Alu 3 120 -192 1434 135 138 67 chr9 7155389 7155671 -135115773 + AluSx SINE Alu 1 302 -10 1510 135 0 91 chr9 7155671 7155812 -135115632 + AluJb SINE Alu 120 272 -40 1976 106 8 0 chr9 7155815 7156079 -135115365 - AluSx SINE Alu -46 266 1 432 0 0 0 chr9 7156090 7156138 -135115306 + (TTTAG)n Simple_repeat Simple_repeat 3 50 0 1973 125 18 4 chr9 7156138 7156419 -135115025 - AluSq SINE Alu -28 285 1 1371 88 39 61 chr9 7156419 7156587 -135114857 - L1P4 LINE L1 -664 5501 5331 2324 117 0 10 chr9 7156587 7156895 -135114549 - AluSq SINE Alu -8 305 1 1371 88 39 61 chr9 7156895 7157104 -135114340 - L1P4 LINE L1 -834 5331 5128 256 162 4 70 chr9 7157123 7157188 -135114256 - AluJo SINE Alu -168 134 83 1933 141 3 3 chr9 7157199 7157503 -135113941 - AluSx SINE Alu -6 306 3 602 228 7 0 chr9 7157510 7157646 -135113798 - L1P LINE L1 -1823 4323 4187 6191 96 3 0 chr9 7157650 7158514 -135112930 - THE1B-int LTR MaLR -712 868 2 2202 132 30 28 chr9 7158515 7158878 -135112566 - THE1B LTR MaLR 0 364 1 670 239 112 10 chr9 7158900 7159105 -135112339 - REP3 LTR ERV -47 515 290 2447 85 3 0 chr9 7159680 7159985 -135111459 + AluSp SINE Alu 1 306 -7 2561 183 48 25 chr9 7159986 7160123 -135111321 - HERVL40 LTR ERVL -1084 1953 1821 4270 77 9 0 chr9 7160123 7160672 -135110772 + MER41A LTR ERV1 1 554 0 2561 183 48 25 chr9 7160672 7161098 -135110346 - HERVL40 LTR ERVL -1216 1821 1377 893 101 52 109 chr9 7161122 7161242 -135110202 + MER57B-int LTR ERV1 632 757 -6010 2283 120 0 0 chr9 7161242 7161543 -135109901 - AluSx SINE Alu -11 301 1 893 101 52 109 chr9 7161543 7161726 -135109718 + MER57B-int LTR ERV1 757 2365 -4402 302 93 0 0 chr9 7161726 7161769 -135109675 + Alu SINE Alu 1 43 -260 599 94 0 62 chr9 7161769 7161865 -135109579 - AluS SINE Alu -222 91 2 2528 74 7 0 chr9 7161879 7162188 -135109256 - AluY SINE Alu 0 311 1 3340 82 144 122 chr9 7162193 7162642 -135108802 + MER57B-int LTR ERV1 6788 7261 -276 2538 63 9 25 chr9 7162642 7162960 -135108484 + AluSp SINE Alu 1 313 0 3340 82 144 122 chr9 7162960 7163240 -135108204 + MER57B-int LTR ERV1 7261 7533 -4 2486 121 24 66 chr9 7163244 7163645 -135107799 + MER57B LTR ERV1 1 382 -52 2519 64 0 0 chr9 7163645 7163940 -135107504 - AluY SINE Alu -16 295 1 2486 121 24 66 chr9 7163940 7163991 -135107453 + MER57B LTR ERV1 382 434 0 1828 181 36 48 chr9 7163991 7164144 -135107300 - HERVL40 LTR ERVL -1693 1344 1191 2176 133 0 0 chr9 7164144 7164446 -135106998 - AluSx SINE Alu -10 302 1 1828 181 36 48 chr9 7164446 7164713 -135106731 - HERVL40 LTR ERVL -1846 1191 929 1739 159 17 23 chr9 7164713 7165015 -135106429 - AluJb SINE Alu -12 300 1 2483 87 0 3 chr9 7165040 7165350 -135106094 - AluSg1 SINE Alu 0 309 1 2321 101 0 3 chr9 7165402 7165709 -135105735 - AluSg SINE Alu -4 306 1 2111 134 13 0 chr9 7165721 7166020 -135105424 - AluSg SINE Alu -7 303 1 678 200 13 13 chr9 7166032 7166182 -135105262 - HERVL40 LTR ERVL -2118 919 770 225 0 0 0 chr9 7166182 7166207 -135105237 + (T)n Simple_repeat Simple_repeat 1 25 0 1002 54 15 0 chr9 7166668 7166798 -135104646 - AluY SINE Alu -179 132 1 2126 121 0 0 chr9 7166798 7167105 -135104339 - AluSq SINE Alu -6 307 1 1989 125 3 0 chr9 7167239 7167527 -135103917 + AluSx SINE Alu 1 289 -23 292 163 0 0 chr9 7167992 7168035 -135103409 + MER57A LTR ERV1 295 337 -66 2043 123 16 7 chr9 7168050 7168359 -135103085 + AluSx SINE Alu 1 312 0 1334 127 0 14 chr9 7168364 7168576 -135102868 + AluSg/x SINE Alu 102 310 0 1360 115 0 14 chr9 7168586 7168794 -135102650 + AluSq SINE Alu 104 308 -5 1409 177 106 40 chr9 7169117 7169439 -135102005 + MLT1D LTR MaLR 163 505 0 2092 92 0 3 chr9 7169445 7169759 -135101685 + AluSc SINE Alu 1 313 0 586 341 70 24 chr9 7169775 7170144 -135101300 - HERVL40 LTR ERVL -2655 2875 2490 269 119 24 0 chr9 7170419 7170461 -135100983 - HERVL40 LTR ERVL -1723 3807 3765 * 485 226 49 0 chr9 7170455 7170557 -135100887 - HERVL40 LTR ERVL -1914 3616 3510 390 56 14 111 chr9 7170623 7170695 -135100749 - Alu SINE Alu 0 301 237 372 331 47 0 chr9 7170739 7170866 -135100578 - HERVL40 LTR ERVL -4314 1216 1084 1913 100 0 4 chr9 7170878 7171148 -135100296 - AluSq SINE Alu -10 303 35 1513 169 0 77 chr9 7171246 7171461 -135099983 - AluJb SINE Alu 0 312 131 2281 85 3 0 chr9 7171461 7171756 -135099688 + AluSp SINE Alu 1 296 -17 1513 169 0 77 chr9 7171756 7171878 -135099566 - AluJb SINE Alu -181 131 1 1349 181 12 116 chr9 7172252 7172386 -135099058 + AluJo SINE Alu 1 147 -155 2228 83 0 3 chr9 7172386 7172687 -135098757 + AluSg SINE Alu 1 300 -10 1928 141 0 26 chr9 7172690 7173002 -135098442 + AluSx SINE Alu 1 304 -8 1349 181 12 116 chr9 7173002 7173200 -135098244 + AluJo SINE Alu 149 302 0 1937 114 3 50 chr9 7173582 7173899 -135097545 + AluSp SINE Alu 1 302 -11 2290 76 3 7 chr9 7173919 7174222 -135097222 + AluSx SINE Alu 1 302 -10 2298 85 7 0 chr9 7174398 7174705 -135096739 + AluSq SINE Alu 1 309 -4 3819 150 49 71 chr9 7175262 7175339 -135096105 - LTR39 LTR ERV1 0 783 706 2028 127 0 0 chr9 7175339 7175638 -135095806 - AluSx SINE Alu -10 302 4 3819 150 49 71 chr9 7175638 7175658 -135095786 - LTR39 LTR ERV1 -77 706 687 1730 153 14 0 chr9 7175658 7175945 -135095499 - AluJb SINE Alu -21 291 1 3819 150 49 71 chr9 7175945 7176647 -135094797 - LTR39 LTR ERV1 -96 687 1 696 144 0 24 chr9 7176688 7176813 -135094631 - FLAM_C SINE Alu -7 126 5 216 200 0 0 chr9 7176819 7176864 -135094580 + CT-rich Low_complexity Low_complexity 4 48 0 2199 88 3 7 chr9 7176881 7177187 -135094257 - AluSp SINE Alu -8 305 1 2013 113 17 3 chr9 7178566 7178866 -135092578 - AluSx SINE Alu -8 304 1 2004 96 0 36 chr9 7178888 7179191 -135092253 - AluSx SINE Alu -20 292 1 411 303 73 12 chr9 7179662 7179827 -135091617 - MIR SINE MIR -3 259 85 222 209 47 0 chr9 7179830 7179873 -135091571 - MIR SINE MIR -151 111 67 647 131 46 39 chr9 7179885 7180015 -135091429 - FLAM_A SINE Alu -2 131 1 304 280 72 32 chr9 7180053 7180131 -135091313 + MIR SINE MIR 17 90 -118 2266 94 0 3 chr9 7180131 7180440 -135091004 - AluSq SINE Alu -5 308 1 1236 172 4 70 chr9 7180441 7180697 -135090747 - MER8 DNA MER2_type 0 239 1 304 280 72 32 chr9 7180697 7180741 -135090703 + MIR SINE MIR 89 146 -62 2091 137 0 3 chr9 7180817 7181130 -135090314 + AluSx SINE Alu 1 312 0 2201 95 3 7 chr9 7181565 7181869 -135089575 - AluSc SINE Alu -6 303 1 1861 106 71 3 chr9 7182207 7182490 -135088954 - AluSx SINE Alu -10 302 1 300 224 83 68 chr9 7182996 7183188 -135088256 - L1MC5 LINE L1 -196 7765 7571 27 0 0 0 chr9 7183188 7183215 -135088229 + AT_rich Low_complexity Low_complexity 1 27 0 1689 146 4 7 chr9 7183247 7183527 -135087917 - AluJb SINE Alu -29 283 5 389 92 70 21 chr9 7184055 7184197 -135087247 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 561 126 23 0 chr9 7184341 7184428 -135087016 - AluSg SINE Alu -210 100 12 2129 106 0 13 chr9 7184477 7184779 -135086665 + AluSx SINE Alu 1 298 -14 2138 118 0 0 chr9 7184784 7185089 -135086355 + AluSx SINE Alu 1 305 -7 1990 118 3 13 chr9 7185106 7185410 -135086034 + AluSc SINE Alu 9 309 0 1237 225 3 40 chr9 7185464 7185627 -135085817 - AluJo SINE Alu -22 290 141 2175 120 0 0 chr9 7185627 7185936 -135085508 - AluSx SINE Alu -3 309 1 1237 225 3 40 chr9 7185936 7186070 -135085374 - AluJo SINE Alu -171 141 4 607 275 18 30 chr9 7186124 7186291 -135085153 - MER61D LTR ERV1 0 501 337 430 240 116 8 chr9 7186296 7186425 -135085019 - LTR28 LTR ERV1 -676 344 202 305 242 78 18 chr9 7186448 7186577 -135084867 + L1MCa LINE L1 1933 2065 -4361 1098 235 0 0 chr9 7186596 7186792 -135084652 - LTR28 LTR ERV1 -824 196 1 1889 101 69 3 chr9 7186917 7187205 -135084239 - AluSx SINE Alu -5 307 1 364 188 58 0 chr9 7187241 7187310 -135084134 - MER70A LTR ERVL 0 472 400 2177 164 9 83 chr9 7187411 7187729 -135083715 - MER70A LTR ERVL -82 390 50 2126 91 3 23 chr9 7187729 7188036 -135083408 - AluSp SINE Alu -12 301 1 2177 164 9 83 chr9 7188036 7188059 -135083385 - MER70A LTR ERVL -422 50 27 1876 146 14 0 chr9 7188059 7188346 -135083098 + AluSx SINE Alu 1 291 -21 2177 164 9 83 chr9 7188346 7188424 -135083020 - MER70A LTR ERVL -445 27 1 268 253 190 0 chr9 7188708 7188786 -135082658 - MLT1G1 LTR MaLR -206 389 297 539 160 0 20 chr9 7188786 7188886 -135082558 + MER4A LTR ERV1 1 98 -566 1606 112 37 121 chr9 7188886 7189263 -135082181 + MER4A LTR ERV1 261 664 0 1988 139 0 0 chr9 7189413 7189715 -135081729 - AluSx SINE Alu -4 308 7 2180 86 7 13 chr9 7189906 7190209 -135081235 - AluSg SINE Alu -8 302 2 1182 96 0 0 chr9 7191286 7191452 -135079992 - AluSg/x SINE Alu -15 295 130 2257 47 40 7 chr9 7192370 7192671 -135078773 - AluY SINE Alu 0 311 1 736 147 133 21 chr9 7192671 7192814 -135078630 - AluSg/x SINE Alu -13 299 141 2323 252 90 26 chr9 7192828 7193096 -135078348 + L2 LINE L2 2005 2254 -1060 2494 61 0 0 chr9 7193096 7193407 -135078037 - AluY SINE Alu 0 311 1 2323 252 90 26 chr9 7193407 7193901 -135077543 + L2 LINE L2 2254 2816 -498 649 241 120 49 chr9 7193906 7194172 -135077272 - LTR33 LTR ERVL -2 519 235 423 233 100 0 chr9 7194264 7194384 -135077060 - LTR33 LTR ERVL -388 133 2 778 263 50 93 chr9 7194384 7194597 -135076847 + L2 LINE L2 2827 3048 -265 2066 100 0 62 chr9 7194597 7194918 -135076526 + AluSx SINE Alu 1 301 -11 778 263 50 93 chr9 7194918 7195168 -135076276 + L2 LINE L2 3048 3270 -43 208 200 213 12 chr9 7195202 7195282 -135076162 - MIR SINE MIR -45 217 122 1678 152 47 7 chr9 7195327 7195624 -135075820 - AluJb SINE Alu -3 309 1 2192 102 16 0 chr9 7195671 7195974 -135075470 - AluSx SINE Alu -4 308 1 1065 111 0 0 chr9 7196021 7196174 -135075270 + AluSp/q SINE Alu 161 313 0 321 155 12 36 chr9 7196188 7196272 -135075172 - Zaphod DNA AcHobo -3041 990 909 241 180 0 20 chr9 7196343 7196393 -135075051 + LTR59 LTR ERV1 471 519 -78 21 57 0 0 chr9 7196397 7196432 -135075012 + AT_rich Low_complexity Low_complexity 1 35 0 2152 96 3 3 chr9 7196441 7196734 -135074710 - AluSq SINE Alu -20 293 1 389 176 73 94 chr9 7196737 7196817 -135074627 - Zaphod DNA AcHobo -3141 890 810 881 159 38 6 chr9 7196817 7196974 -135074470 + FRAM SINE Alu 1 162 -4 389 176 73 94 chr9 7196974 7197060 -135074384 - Zaphod DNA AcHobo -3221 810 728 2068 108 10 0 chr9 7197060 7197355 -135074089 - AluSx SINE Alu -14 298 1 389 176 73 94 chr9 7197355 7197420 -135074024 - Zaphod DNA AcHobo -3303 728 663 1321 53 0 6 chr9 7197441 7197612 -135073832 - AluY SINE Alu -6 305 136 2191 99 3 3 chr9 7197667 7197969 -135073475 - AluSx SINE Alu -10 302 1 1125 268 135 39 chr9 7197969 7198177 -135073267 - Zaphod DNA AcHobo -3392 639 453 2265 92 0 3 chr9 7198177 7198481 -135072963 - AluSg SINE Alu -7 303 1 1125 268 135 39 chr9 7198481 7198686 -135072758 - Zaphod DNA AcHobo -3578 453 186 1641 138 145 59 chr9 7198689 7198822 -135072622 + LTR54B LTR ERV1 1 121 -377 2210 108 7 0 chr9 7198822 7199129 -135072315 + AluSc SINE Alu 1 309 0 1641 138 145 59 chr9 7199129 7199237 -135072207 + LTR54B LTR ERV1 121 218 -280 1953 107 10 24 chr9 7199237 7199535 -135071909 + AluSx SINE Alu 1 294 -18 1641 138 145 59 chr9 7199535 7199747 -135071697 + LTR54B LTR ERV1 218 494 -4 706 168 61 26 chr9 7200420 7200636 -135070808 - MLT1A1 LTR MaLR 0 365 207 983 149 11 17 chr9 7200677 7200852 -135070592 + MER4A LTR ERV1 1 174 -490 2562 39 0 0 chr9 7200873 7201178 -135070266 + AluY SINE Alu 1 305 -6 878 164 18 12 chr9 7201279 7201450 -135069994 + AluJo SINE Alu 126 297 -15 208 222 42 69 chr9 7201526 7201598 -135069846 + MIR SINE MIR 193 262 0 2143 48 44 0 chr9 7202560 7202857 -135068587 - AluY SINE Alu 0 309 1 823 195 84 97 chr9 7204087 7204395 -135067049 + MER2 DNA MER2_type 42 345 0 305 340 113 5 chr9 7204437 7204640 -135066804 - MIR SINE MIR -18 244 20 314 89 0 0 chr9 7204853 7204898 -135066546 - MADE1 DNA Mariner -4 76 32 2071 89 14 0 chr9 7204898 7205189 -135066255 + AluSx SINE Alu 1 295 -17 1208 128 0 0 chr9 7205191 7205371 -135066073 + AluSq SINE Alu 134 313 0 951 199 0 0 chr9 7205497 7205663 -135065781 - AluJb SINE Alu -13 299 134 1883 106 65 0 chr9 7205663 7205938 -135065506 - AluSx SINE Alu -19 293 1 235 284 43 9 chr9 7205944 7206060 -135065384 - L1ME LINE L1 -338 5783 5664 621 118 0 0 chr9 7206204 7206289 -135065155 + AluY SINE Alu 207 291 -20 1410 165 120 39 chr9 7206458 7206631 -135064813 - MSTD LTR MaLR -2 394 236 2008 121 7 3 chr9 7206631 7206928 -135064516 - AluSx SINE Alu -14 298 1 1410 165 120 39 chr9 7206928 7207063 -135064381 - MSTD LTR MaLR -160 236 61 418 269 45 87 chr9 7207178 7207427 -135064017 + MIR SINE MIR 23 260 -2 2099 96 0 53 chr9 7207973 7208295 -135063149 - AluSg SINE Alu -5 305 1 1626 176 0 20 chr9 7208298 7208599 -135062845 - AluJo SINE Alu -17 295 1 192 395 45 13 chr9 7208599 7208756 -135062688 + L2 LINE L2 2517 2678 -636 2162 111 3 0 chr9 7208788 7209095 -135062349 + AluSp SINE Alu 1 308 -5 2194 100 0 10 chr9 7209584 7209884 -135061560 - AluSg SINE Alu -13 297 1 2182 112 0 6 chr9 7209970 7210283 -135061161 - AluSx SINE Alu -1 311 1 373 327 79 16 chr9 7210283 7210573 -135060871 + L2 LINE L2 2772 3081 -191 629 212 80 7 chr9 7210646 7210797 -135060647 + AluJb SINE Alu 134 295 -17 1474 115 0 0 chr9 7211338 7211547 -135059897 + AluSg/x SINE Alu 92 300 -10 1906 155 0 0 chr9 7211699 7212008 -135059436 + AluSx SINE Alu 1 309 -3 416 291 147 103 chr9 7212013 7212420 -135059024 + L1MEd LINE L1 66 513 -5606 1992 103 26 0 chr9 7212420 7212743 -135058701 + AluSg SINE Alu 1 330 0 416 291 147 103 chr9 7212743 7212966 -135058478 + L1MEd LINE L1 513 725 -5394 1136 189 12 87 chr9 7212975 7213123 -135058321 + AluJb SINE Alu 5 116 -196 2125 94 3 26 chr9 7213123 7213431 -135058013 + AluSq SINE Alu 1 301 -12 1136 189 12 87 chr9 7213431 7213615 -135057829 + AluJb SINE Alu 116 312 0 376 192 50 20 chr9 7213686 7213785 -135057659 + L1MC5 LINE L1 7336 7437 -524 604 274 63 83 chr9 7213806 7214038 -135057406 - L1 LINE L1 -2084 4062 3827 1516 79 26 40 chr9 7214038 7214265 -135057179 + AluSx SINE Alu 1 224 -88 604 274 63 83 chr9 7214265 7214694 -135056750 - L1 LINE L1 -2319 3827 3442 1837 129 33 0 chr9 7215759 7216061 -135055383 - AluJb SINE Alu 0 312 1 648 105 0 11 chr9 7216186 7216281 -135055163 + FLAM_C SINE Alu 34 127 -16 2099 110 7 0 chr9 7216289 7216599 -135054845 + AluSp SINE Alu 1 312 -1 2489 47 0 0 chr9 7216828 7217126 -135054318 - AluY SINE Alu -13 298 1 202 303 210 12 chr9 7217186 7217348 -135054096 + MIR SINE MIR 48 241 -21 1504 204 92 36 chr9 7217432 7217851 -135053593 + MER39 LTR ERV1 269 565 0 2255 100 0 0 chr9 7217915 7218224 -135053220 - AluSx SINE Alu -3 309 1 2141 103 3 10 chr9 7218256 7218567 -135052877 + AluSx SINE Alu 3 311 -1 195 42 0 0 chr9 7218812 7218836 -135052608 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1992 128 3 3 chr9 7218990 7219287 -135052157 - AluSp SINE Alu -16 297 1 2121 114 0 10 chr9 7219287 7219595 -135051849 - AluSx SINE Alu -7 305 1 1959 97 0 0 chr9 7219601 7219915 -135051529 - AluSc SINE Alu 0 336 23 1669 176 0 0 chr9 7219923 7220236 -135051208 - AluJb SINE Alu 0 313 1 2161 84 3 0 chr9 7220768 7221087 -135050357 - AluSx SINE Alu 0 320 1 1319 209 17 24 chr9 7221095 7221391 -135050053 - AluJo SINE Alu -18 294 1 966 201 14 5 chr9 7221399 7221608 -135049836 - AluJb SINE Alu 0 312 102 565 147 147 0 chr9 7221608 7221710 -135049734 + FLAM_C SINE Alu 1 117 -26 1882 154 0 3 chr9 7221723 7222034 -135049410 - AluJb SINE Alu -2 310 1 2188 92 3 7 chr9 7222101 7222406 -135049038 + AluSx SINE Alu 1 304 -8 1542 170 44 27 chr9 7222696 7223059 -135048385 - L1MA7 LINE L1 -100 6200 5825 974 166 0 12 chr9 7223066 7223229 -135048215 - AluJb SINE Alu -18 294 134 2146 105 0 0 chr9 7223229 7223523 -135047921 - AluSc SINE Alu -15 294 1 2060 124 0 3 chr9 7223528 7223826 -135047618 - AluSx SINE Alu -15 297 1 294 202 11 79 chr9 7224074 7224163 -135047281 - MER34B LTR ERV1 -448 117 35 259 161 18 18 chr9 7224326 7224382 -135047062 - AluSp SINE Alu -133 170 115 21 0 0 0 chr9 7224550 7224571 -135046873 + AT_rich Low_complexity Low_complexity 1 21 0 1890 155 0 0 chr9 7224571 7224867 -135046577 + AluSx SINE Alu 1 296 -16 1510 157 20 38 chr9 7224880 7225045 -135046399 - AluJo SINE Alu -14 298 139 2211 113 3 0 chr9 7225045 7225356 -135046088 - AluSx SINE Alu 0 312 1 1510 157 20 38 chr9 7225356 7225483 -135045961 - AluJo SINE Alu -173 139 11 754 133 18 0 chr9 7225610 7225723 -135045721 + AluSq/x SINE Alu 2 116 -196 1479 96 58 139 chr9 7225727 7225748 -135045696 - MER4C-int LTR ERV1 -4278 1268 1247 2199 114 0 0 chr9 7225748 7226055 -135045389 + AluSq SINE Alu 1 307 -6 1479 96 58 139 chr9 7226055 7226293 -135045151 - MER4C-int LTR ERV1 -4299 1247 991 2042 111 14 0 chr9 7226293 7226590 -135044854 - AluSg SINE Alu -9 301 1 1479 96 58 139 chr9 7226590 7226649 -135044795 - MER4C-int LTR ERV1 -4555 991 511 235 178 0 44 chr9 7226669 7226714 -135044730 - LTR49 LTR ERV1 -282 313 271 309 143 0 0 chr9 7226781 7226830 -135044614 - MER4C-int LTR ERV1 -5799 799 751 713 229 227 24 chr9 7226841 7227288 -135044156 - MER4C-int LTR ERV1 -6009 589 1 489 144 264 8 chr9 7227309 7227434 -135044010 - MER4C LTR ERV1 -18 447 291 358 195 98 89 chr9 7227489 7227612 -135043832 - MER4A LTR ERV1 -322 342 219 1800 86 89 51 chr9 7227612 7227904 -135043540 + AluSq SINE Alu 1 303 -10 412 16 16 0 chr9 7227926 7227987 -135043457 - AluY SINE Alu -1 310 249 252 0 0 0 chr9 7228090 7228118 -135043326 + (A)n Simple_repeat Simple_repeat 1 28 0 1954 121 28 0 chr9 7228170 7228459 -135042985 - AluSq SINE Alu -16 297 1 865 195 51 96 chr9 7229139 7229194 -135042250 - MSTD LTR MaLR 0 396 340 862 133 0 22 chr9 7229194 7229329 -135042115 - FLAM_C SINE Alu 0 133 2 865 195 51 96 chr9 7229329 7229546 -135041898 - MSTD LTR MaLR -56 340 87 2362 77 0 7 chr9 7229622 7229932 -135041512 - AluY SINE Alu -3 308 1 2110 132 0 0 chr9 7229958 7230269 -135041175 - AluSq SINE Alu -2 311 1 1820 145 7 7 chr9 7230350 7230660 -135040784 + AluJb SINE Alu 1 310 -2 1672 147 6 58 chr9 7230712 7230846 -135040598 + AluSx SINE Alu 1 140 -172 2165 102 0 0 chr9 7230846 7231140 -135040304 + AluY SINE Alu 1 294 -17 1672 147 6 58 chr9 7231140 7231332 -135040112 + AluSx SINE Alu 140 310 -2 591 236 52 17 chr9 7231895 7232069 -135039375 + MIR SINE MIR 77 256 -6 2216 73 0 0 chr9 7232191 7232479 -135038965 + AluSx SINE Alu 1 288 -24 1740 122 44 0 chr9 7235427 7235752 -135035692 + AluSx SINE Alu 1 337 0 2137 158 47 27 chr9 7235753 7236202 -135035242 - L1MB8 LINE L1 -72 6106 5649 180 0 0 0 chr9 7236202 7236222 -135035222 + (TA)n Simple_repeat Simple_repeat 1 20 0 2237 73 0 7 chr9 7236299 7236628 -135034816 - AluY SINE Alu 0 327 1 2008 98 13 36 chr9 7236759 7237065 -135034379 - AluSx SINE Alu -13 299 1 1201 209 60 11 chr9 7237093 7237376 -135034068 - AluJo SINE Alu -15 297 1 1984 73 52 11 chr9 7237568 7237854 -135033590 - AluSg SINE Alu -12 298 1 1752 64 0 0 chr9 7237855 7238074 -135033370 - L1PA6 LINE L1 0 6154 5936 773 171 39 0 chr9 7238098 7238227 -135033217 - AluJo SINE Alu -177 135 2 205 195 52 0 chr9 7238332 7238409 -135033035 + (TTATA)n Simple_repeat Simple_repeat 3 83 0 2143 104 3 7 chr9 7238419 7238716 -135032728 - AluSq SINE Alu -17 296 1 238 234 90 112 chr9 7238975 7239163 -135032281 + L2 LINE L2 2868 3051 -221 388 233 70 39 chr9 7239284 7239413 -135032031 + L1ME4a LINE L1 5987 6119 -2 2144 91 3 7 chr9 7239518 7239815 -135031629 - AluSp SINE Alu -17 296 1 300 200 67 40 chr9 7240254 7240329 -135031115 - L2 LINE L2 -33 3280 3204 202 299 81 58 chr9 7240541 7240849 -135030595 + L2 LINE L2 2290 2604 -710 359 294 99 60 chr9 7241030 7241394 -135030050 + L2 LINE L2 2934 3311 -2 394 161 23 23 chr9 7241429 7241516 -135029928 + MER112 DNA MER1_type 23 109 -151 2018 121 0 16 chr9 7241539 7241844 -135029600 - AluSx SINE Alu -11 301 2 23 33 0 0 chr9 7241848 7241878 -135029566 + AT_rich Low_complexity Low_complexity 1 30 0 640 150 154 91 chr9 7241882 7242102 -135029342 - MER46A DNA MER2_type -1 235 2 2237 86 0 10 chr9 7242883 7243197 -135028247 - AluY SINE Alu 0 311 1 1727 121 6 82 chr9 7243200 7243515 -135027929 - AluSx SINE Alu -21 291 1 22 35 0 0 chr9 7243656 7243685 -135027759 + AT_rich Low_complexity Low_complexity 1 29 0 716 221 117 29 chr9 7244202 7244442 -135027002 - L1MC4 LINE L1 -180 7862 7602 2279 100 3 0 chr9 7244520 7244829 -135026615 - AluSq SINE Alu -3 310 1 198 167 0 0 chr9 7245086 7245122 -135026322 + T-rich Low_complexity Low_complexity 2 37 0 373 272 41 47 chr9 7245170 7245375 -135026069 + MIR SINE MIR 30 237 -25 1987 136 7 0 chr9 7245656 7245966 -135025478 + AluSq SINE Alu 2 313 0 2353 88 0 0 chr9 7246524 7246830 -135024614 - AluSg SINE Alu -4 306 1 918 125 0 22 chr9 7246851 7246987 -135024457 - FLAM_C SINE Alu 0 133 1 2055 122 3 0 chr9 7247063 7247367 -135024077 - AluSx SINE Alu -7 305 1 1658 74 5 0 chr9 7247908 7248123 -135023321 - AluSg/x SINE Alu -14 298 83 2206 89 3 0 chr9 7248124 7248416 -135023028 - AluSp SINE Alu -19 294 2 2134 107 0 16 chr9 7248435 7248752 -135022692 - AluSx SINE Alu 0 312 1 1695 150 7 20 chr9 7248752 7249051 -135022393 - AluJo SINE Alu -5 307 12 2071 128 3 0 chr9 7249246 7249543 -135021901 + AluSx SINE Alu 1 298 -14 226 48 0 48 chr9 7249661 7249703 -135021741 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1677 118 0 0 chr9 7249715 7249944 -135021500 - AluSx SINE Alu -83 229 1 1815 145 32 0 chr9 7250140 7250422 -135021022 + AluSx SINE Alu 2 292 -20 612 252 30 70 chr9 7250738 7250769 -135020675 - L1ME3A LINE L1 -294 5872 5841 1914 139 0 20 chr9 7250769 7251071 -135020373 - AluSx SINE Alu -14 298 3 612 252 30 70 chr9 7251071 7251269 -135020175 - L1ME3A LINE L1 -325 5841 5652 2130 93 7 0 chr9 7251287 7251576 -135019868 - AluSq SINE Alu -21 292 2 658 212 179 5 chr9 7251583 7251767 -135019677 - MER20 DNA MER1_type -3 216 1 778 199 0 57 chr9 7251839 7252015 -135019429 - FRAM SINE Alu -11 165 1 1777 96 88 7 chr9 7252024 7252296 -135019148 - AluSc SINE Alu -15 294 1 1976 99 20 10 chr9 7252355 7252658 -135018786 - AluSq SINE Alu -7 306 1 591 98 0 0 chr9 7253396 7253478 -135017966 - AluSg/x SINE Alu -20 289 208 903 148 24 30 chr9 7253673 7253842 -135017602 - AluJo/FRAM SINE Alu -11 301 134 2148 110 0 0 chr9 7253842 7254141 -135017303 - AluSx SINE Alu -8 304 6 2024 109 0 3 chr9 7254241 7254525 -135016919 + AluSx SINE Alu 1 283 -29 296 69 52 52 chr9 7254573 7254631 -135016813 - Alu SINE Alu 0 300 243 1008 111 0 7 chr9 7254635 7254779 -135016665 - AluSq/x SINE Alu -170 143 1 2185 64 42 0 chr9 7254790 7255073 -135016371 - AluY SINE Alu -16 295 1 227 242 91 0 chr9 7255452 7255518 -135015926 + LTR67 LTR ERVL 485 556 -1 1937 136 3 7 chr9 7256242 7256552 -135014892 + AluSq SINE Alu 1 309 -4 3157 186 18 46 chr9 7256975 7257578 -135013866 + MER82 DNA MER2_type 2 586 -67 1992 106 7 16 chr9 7257578 7257881 -135013563 - AluSq SINE Alu -13 300 1 3157 186 18 46 chr9 7257881 7257945 -135013499 + MER82 DNA MER2_type 586 650 -3 451 256 147 24 chr9 7258096 7258307 -135013137 + MIR SINE MIR 6 242 -20 584 232 64 64 chr9 7259855 7260058 -135011386 - MIR SINE MIR -26 236 30 1248 138 0 15 chr9 7260094 7260289 -135011155 - AluSx SINE Alu -120 192 1 1956 202 23 32 chr9 7260808 7261099 -135010345 - MLT1C LTR MaLR 0 467 180 2179 92 0 7 chr9 7261099 7261394 -135010050 - AluSg SINE Alu -17 293 1 1956 202 23 32 chr9 7261394 7261573 -135009871 - MLT1C LTR MaLR -287 180 1 256 263 140 22 chr9 7262542 7262680 -135008764 + L1ME LINE L1 5320 5474 -647 184 268 244 0 chr9 7262895 7262977 -135008467 + MIR SINE MIR 29 130 -78 2015 122 0 3 chr9 7262987 7263291 -135008153 - AluSx SINE Alu -9 303 1 704 256 142 89 chr9 7263296 7263984 -135007460 + L2 LINE L2 2422 3145 -168 208 351 117 35 chr9 7264367 7264794 -135006650 - L2 LINE L2 -1 3271 2810 1673 127 3 71 chr9 7264798 7264976 -135006468 - AluJb SINE Alu -9 303 155 2313 83 3 0 chr9 7264976 7265277 -135006167 - AluSp SINE Alu -11 302 1 1673 127 3 71 chr9 7265277 7265421 -135006023 - AluJb SINE Alu -157 155 3 1036 147 0 6 chr9 7265824 7265994 -135005450 + AluJb SINE Alu 3 171 -141 1708 77 88 49 chr9 7266160 7266445 -135004999 - AluY SINE Alu -2 309 14 261 83 0 0 chr9 7266559 7266595 -135004849 + (A)n Simple_repeat Simple_repeat 1 36 0 272 174 0 0 chr9 7266724 7266770 -135004674 + L2 LINE L2 3264 3309 -4 212 359 76 40 chr9 7266819 7267042 -135004402 + L2 LINE L2 2851 3081 -191 1768 149 26 4 chr9 7267042 7267310 -135004134 - AluSx SINE Alu -38 274 1 2175 128 3 0 chr9 7267645 7267951 -135003493 + AluSp SINE Alu 1 307 -6 2072 107 7 10 chr9 7267964 7268255 -135003189 + AluSx SINE Alu 3 292 -20 194 0 39 0 chr9 7268256 7268282 -135003162 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 278 139 0 0 chr9 7268424 7268467 -135002977 - AluSg SINE Alu -6 295 253 2136 112 0 0 chr9 7268467 7268743 -135002701 - AluSg SINE Alu -34 276 1 2419 85 0 9 chr9 7269583 7269899 -135001545 - AluSq SINE Alu 0 313 1 979 178 15 54 chr9 7269904 7270163 -135001281 - L1MB7 LINE L1 0 6184 5936 527 194 32 48 chr9 7270176 7270300 -135001144 - L2 LINE L2 -2 3311 3190 244 363 104 0 chr9 7270327 7270462 -135000982 - L2 LINE L2 -284 3029 2881 283 286 109 51 chr9 7270585 7270760 -135000684 - L2 LINE L2 -607 2707 2523 2206 122 0 3 chr9 7271383 7271686 -134999758 - AluSx SINE Alu -8 304 3 1900 174 0 0 chr9 7271724 7272028 -134999416 - AluJb SINE Alu -8 304 1 1632 95 14 0 chr9 7272220 7272442 -134999002 + AluSq SINE Alu 1 225 -88 1519 119 78 71 chr9 7273048 7273343 -134998101 - AluJb SINE Alu -15 297 1 10869 55 29 16 chr9 7274309 7275674 -134995770 - SVA Other Other -2 1384 2 228 67 0 0 chr9 7275687 7275717 -134995727 + (T)n Simple_repeat Simple_repeat 1 30 0 1703 157 13 43 chr9 7275997 7276142 -134995302 + AluJo SINE Alu 1 134 -178 2101 138 10 0 chr9 7276142 7276446 -134994998 + AluSx SINE Alu 1 307 -5 1703 157 13 43 chr9 7276446 7276600 -134994844 + AluJo SINE Alu 134 291 -21 1979 137 0 16 chr9 7276667 7276982 -134994462 - AluJb SINE Alu 0 312 3 210 257 57 0 chr9 7277109 7277179 -134994265 + MIR SINE MIR 62 135 -127 260 231 51 0 chr9 7277217 7277295 -134994149 + L1ME3A LINE L1 5003 5084 -1062 2242 64 68 14 chr9 7277298 7277593 -134993851 - AluY SINE Alu 0 311 1 345 24 0 0 chr9 7277675 7277717 -134993727 + (TC)n Simple_repeat Simple_repeat 2 43 0 1663 255 31 103 chr9 7277773 7277879 -134993565 + L1ME3A LINE L1 5263 5375 -795 2324 91 3 3 chr9 7277879 7278177 -134993267 + AluSq SINE Alu 1 298 -15 1663 255 31 103 chr9 7278177 7278673 -134992771 + L1ME3A LINE L1 5375 5770 -400 1735 145 80 0 chr9 7278673 7278963 -134992481 - AluSx SINE Alu 0 311 1 1663 255 31 103 chr9 7278963 7279337 -134992107 + L1ME3A LINE L1 5770 6170 0 2141 94 3 41 chr9 7279347 7279667 -134991777 + AluSc SINE Alu 1 308 -1 790 163 31 0 chr9 7279686 7279815 -134991629 + FLAM_C SINE Alu 1 133 0 1846 156 28 3 chr9 7279891 7280179 -134991265 - AluSx SINE Alu -17 295 1 814 284 10 0 chr9 7280281 7280489 -134990955 - MER63A DNA MER1_type 0 210 1 2260 98 3 3 chr9 7280534 7280831 -134990613 + AluSg SINE Alu 1 297 -13 2283 98 0 0 chr9 7280959 7281255 -134990189 - AluSg SINE Alu -14 296 1 306 262 219 16 chr9 7281297 7281480 -134989964 + MIR SINE MIR 34 253 -9 1868 180 158 68 chr9 7282227 7282269 -134989175 - MLT1F1 LTR MaLR 0 567 530 2268 101 3 0 chr9 7282269 7282593 -134988851 + AluSp SINE Alu 1 325 0 1868 180 158 68 chr9 7282593 7282916 -134988528 - MLT1F1 LTR MaLR -37 530 237 504 45 0 0 chr9 7282916 7282983 -134988461 + (TCTCCC)n Simple_repeat Simple_repeat 1 67 0 8756 24 9 264 chr9 7282983 7284767 -134986677 + SVA Other Other 57 1386 0 1868 180 158 68 chr9 7284767 7284909 -134986535 - MLT1F1 LTR MaLR -329 238 11 1789 166 31 0 chr9 7285773 7286063 -134985381 + AluJb SINE Alu 1 299 -13 228 299 130 0 chr9 7286351 7286428 -134985016 + L2 LINE L2 3186 3272 0 1810 153 7 7 chr9 7286647 7286956 -134984488 + AluJb SINE Alu 2 310 0 2012 83 8 8 chr9 7287217 7287481 -134983963 - AluSg SINE Alu -19 291 28 400 345 81 5 chr9 7287672 7287895 -134983549 - MIR SINE MIR -15 247 8 1111 90 28 0 chr9 7288160 7288305 -134983139 + AluSg/x SINE Alu 150 298 -14 1989 126 77 0 chr9 7288462 7288772 -134982672 - MER1B DNA MER1_type 0 337 4 2217 89 13 16 chr9 7288950 7289264 -134982180 + AluSp SINE Alu 1 313 0 507 176 96 64 chr9 7289264 7289381 -134982063 - FLAM_C SINE Alu -174 128 5 273 286 70 29 chr9 7290017 7290188 -134981256 - L1ME LINE L1 -406 5715 5538 25 0 0 0 chr9 7291242 7291267 -134980177 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr9 7291407 7291450 -134979994 + AT_rich Low_complexity Low_complexity 1 43 0 695 170 0 0 chr9 7291458 7291570 -134979874 - FLAM_C SINE Alu -30 113 2 327 281 38 72 chr9 7291576 7291661 -134979783 - L1MC4 LINE L1 -1 8041 7955 869 165 83 61 chr9 7291661 7291891 -134979553 + MER46A DNA MER2_type 1 235 -1 327 281 38 72 chr9 7291891 7292040 -134979404 - L1MC4 LINE L1 -87 7955 7815 247 119 203 0 chr9 7292045 7292104 -134979340 - L1MC4 LINE L1 -273 7769 7699 326 228 22 73 chr9 7292146 7292282 -134979162 - L1MC4 LINE L1 -725 7317 7189 710 200 35 102 chr9 7292287 7292618 -134978826 - L1ME3A LINE L1 -1 6169 5865 562 209 160 12 chr9 7292646 7292887 -134978557 - L1ME3A LINE L1 -556 5606 5328 231 276 105 6 chr9 7293061 7293242 -134978202 + L1MC5 LINE L1 7628 7826 -135 1881 155 7 10 chr9 7293265 7293561 -134977883 - AluJo SINE Alu -17 295 1 350 284 22 33 chr9 7293715 7293820 -134977624 - L1ME4a LINE L1 -9 6112 6008 2266 110 0 0 chr9 7293820 7294121 -134977323 - AluSg SINE Alu -9 301 1 350 284 22 33 chr9 7294121 7294198 -134977246 - L1ME4a LINE L1 -113 6008 5932 192 185 19 37 chr9 7294784 7294838 -134976606 - MIR SINE MIR -67 141 89 7430 51 2 0 chr9 7296779 7297678 -134973766 - L1PA6 LINE L1 0 6154 5254 1871 134 42 0 chr9 7297707 7297991 -134973453 - AluSx SINE Alu -16 296 1 575 256 94 6 chr9 7298193 7298373 -134973071 + MER58A DNA MER1_type 28 223 -1 1333 155 52 174 chr9 7300541 7300918 -134970526 - Charlie1b DNA MER1_type -2238 523 238 2261 111 0 7 chr9 7300918 7301225 -134970219 + AluSq SINE Alu 1 305 -8 1333 155 52 174 chr9 7301225 7301437 -134970007 - Charlie1b DNA MER1_type -2523 238 2 1804 186 0 3 chr9 7301856 7302168 -134969276 - AluJb SINE Alu -1 311 1 378 307 108 25 chr9 7302382 7302623 -134968821 - L1ME4a LINE L1 -43 6078 5818 2318 103 0 3 chr9 7302640 7302942 -134968502 + AluSx SINE Alu 1 301 -11 240 326 93 8 chr9 7303248 7303377 -134968067 + MIR3 SINE MIR 67 206 -2 231 299 186 26 chr9 7303865 7304096 -134967348 + L3 LINE CR1 891 1158 -419 2442 74 0 0 chr9 7304207 7304503 -134966941 - AluY SINE Alu -15 296 1 206 339 43 38 chr9 7304509 7304645 -134966799 + L3 LINE CR1 1372 1511 -66 2278 98 3 3 chr9 7304645 7304941 -134966503 + AluSp SINE Alu 1 296 -17 206 339 43 38 chr9 7304941 7304990 -134966454 + L3 LINE CR1 1511 1558 -19 351 279 98 27 chr9 7305536 7305719 -134965725 - MIR3 SINE MIR -4 204 9 728 286 51 83 chr9 7307227 7307417 -134964027 - MLT1J LTR MaLR 0 511 316 1881 117 92 0 chr9 7307417 7307698 -134963746 - AluSx SINE Alu -5 307 1 728 286 51 83 chr9 7307698 7308035 -134963409 - MLT1J LTR MaLR -195 316 1 2426 54 3 10 chr9 7308114 7308410 -134963034 + AluY SINE Alu 1 294 -17 2673 61 0 0 chr9 7308590 7308901 -134962543 - AluY SINE Alu 0 311 1 2136 116 0 35 chr9 7308901 7309212 -134962232 - AluSq SINE Alu -13 300 1 434 309 57 10 chr9 7309700 7309894 -134961550 + MIR SINE MIR 54 256 -6 1847 158 20 3 chr9 7310220 7310512 -134960932 - AluSx SINE Alu -15 297 1 262 0 53 0 chr9 7311839 7311877 -134959567 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 628 106 0 4 chr9 7312348 7312567 -134958877 + AluSx SINE Alu 3 299 -11 777 299 59 21 chr9 7312814 7313235 -134958209 - L1ME3A LINE L1 -204 5949 5513 1705 197 3 0 chr9 7313239 7313533 -134957911 - AluJo SINE Alu -17 295 1 526 200 159 3 chr9 7313549 7313699 -134957745 - L1MB7 LINE L1 -9 6155 5992 344 219 136 67 chr9 7313698 7314050 -134957394 - L1ME3A LINE L1 -686 5475 5102 * 279 245 50 80 chr9 7314099 7314299 -134957145 - L1ME3A LINE L1 -5016 1103 910 22 35 0 0 chr9 7365332 7365361 -134906083 + AT_rich Low_complexity Low_complexity 1 29 0 579 295 101 4 chr9 7367064 7367322 -134904122 + LTR16A LTR ERVL 168 450 0 1702 203 42 3 chr9 7368001 7368331 -134903113 - MER2 DNA MER2_type 0 344 2 245 337 41 51 chr9 7368970 7369068 -134902376 + L2 LINE L2 3157 3253 -19 493 138 0 58 chr9 7369365 7369452 -134901992 + L1M3f LINE L1 6 87 -5241 2210 98 3 10 chr9 7369453 7369749 -134901695 + AluSc SINE Alu 1 294 -15 384 240 0 0 chr9 7369749 7369870 -134901574 + (TA)n Simple_repeat Simple_repeat 2 122 0 3820 174 42 52 chr9 7369870 7370586 -134900858 + L1M3f LINE L1 77 784 -4544 1989 127 6 41 chr9 7370586 7370726 -134900718 + AluSx SINE Alu 5 148 -164 2278 49 39 29 chr9 7370726 7371034 -134900410 + AluY SINE Alu 1 311 0 1989 127 6 41 chr9 7371034 7371208 -134900236 + AluSx SINE Alu 148 308 -4 3820 174 42 52 chr9 7371208 7371369 -134900075 + L1M3f LINE L1 784 945 -4383 2931 90 7 7 chr9 7371846 7372291 -134899153 - L1P LINE L1 -3470 2676 2232 806 158 0 7 chr9 7372291 7372430 -134899014 - Tigger1 DNA MER2_type -1217 1201 1064 1149 112 0 0 chr9 7372430 7372582 -134898862 - AluSp SINE Alu -14 299 148 1514 112 5 27 chr9 7372582 7372805 -134898639 - AluSx SINE Alu -94 218 1 2852 135 100 27 chr9 7372805 7373406 -134898038 - Tigger1 DNA MER2_type -1346 1072 428 522 43 0 0 chr9 7373406 7373475 -134897969 + (GA)n Simple_repeat Simple_repeat 1 69 0 1517 187 59 0 chr9 7373475 7373796 -134897648 - Tigger1 DNA MER2_type -2076 342 3 830 112 0 70 chr9 7374306 7374449 -134896995 + FLAM_C SINE Alu 1 133 0 271 57 0 0 chr9 7375741 7375776 -134895668 - U2 snRNA snRNA -153 35 1 2313 87 0 0 chr9 7376713 7377002 -134894442 - AluY SINE Alu -22 289 1 187 182 0 0 chr9 7377004 7377037 -134894407 + MIR3 SINE MIR 154 186 -22 22 0 0 0 chr9 7378997 7379019 -134892425 + AT_rich Low_complexity Low_complexity 1 22 0 188 206 123 41 chr9 7379151 7379224 -134892220 + MIR SINE MIR 75 153 -55 21 0 0 0 chr9 7379827 7379848 -134891596 + AT_rich Low_complexity Low_complexity 1 21 0 336 48 0 0 chr9 7382212 7382254 -134889190 + (TG)n Simple_repeat Simple_repeat 1 42 0 207 240 0 20 chr9 7384070 7384120 -134887324 + CT-rich Low_complexity Low_complexity 4 52 0 1125 184 45 58 chr9 7384445 7384755 -134886689 - L1ME1 LINE L1 -4 6162 5857 1733 157 35 3 chr9 7385762 7385922 -134885522 - AluSx SINE Alu -16 296 122 2223 117 10 7 chr9 7385922 7386231 -134885213 - AluSg SINE Alu 0 310 1 1733 157 35 3 chr9 7386231 7386357 -134885087 - AluSx SINE Alu -190 122 1 2768 7 0 3 chr9 7388221 7388527 -134882917 - AluYa5 SINE Alu -6 305 1 360 0 0 0 chr9 7388651 7388691 -134882753 + (TG)n Simple_repeat Simple_repeat 1 40 0 462 277 35 7 chr9 7389761 7389902 -134881542 + MIR SINE MIR 98 242 -20 2102 188 25 11 chr9 7390734 7391212 -134880232 + L1MB7 LINE L1 5691 6175 -9 21 0 0 0 chr9 7391345 7391366 -134880078 + AT_rich Low_complexity Low_complexity 1 21 0 422 195 0 0 chr9 7391408 7391495 -134879949 + L1ME2 LINE L1 6068 6154 -10 22 35 0 0 chr9 7393731 7393760 -134877684 + AT_rich Low_complexity Low_complexity 1 29 0 905 252 96 15 chr9 7394661 7394994 -134876450 - MLT1E2 LTR MaLR 0 626 267 331 225 0 25 chr9 7394992 7395072 -134876372 - MLT1E2 LTR MaLR -407 98 21 * 759 161 22 29 chr9 7395146 7395283 -134876161 + AluJ SINE Alu 1 136 -176 32 0 0 0 chr9 7395996 7396028 -134875416 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 7396093 7396114 -134875330 + AT_rich Low_complexity Low_complexity 1 21 0 981 189 0 0 chr9 7398691 7398876 -134872568 - L1MC1 LINE L1 -12 6321 6137 781 139 0 15 chr9 7398920 7399057 -134872387 - L1MC1 LINE L1 -184 6149 6015 252 0 0 0 chr9 7399070 7399098 -134872346 + (TG)n Simple_repeat Simple_repeat 2 29 0 879 184 6 12 chr9 7400012 7400175 -134871269 + AluJ SINE Alu 136 297 -15 212 305 95 38 chr9 7401313 7401418 -134870026 - L2 LINE L2 -13 3259 3149 285 332 51 16 chr9 7401426 7401566 -134869878 + MER5B DNA MER1_type 38 175 -3 265 277 70 7 chr9 7401969 7402095 -134869349 + MIR SINE MIR 48 151 -57 472 321 132 35 chr9 7402869 7403209 -134868235 + L1MC/D LINE L1 5431 5803 -318 2134 134 3 0 chr9 7403484 7403783 -134867661 + AluSx SINE Alu 1 300 -12 290 49 0 0 chr9 7406029 7406070 -134865374 - FLAM_A SINE Alu -71 61 21 1177 174 0 15 chr9 7406072 7406267 -134865177 - AluJo SINE Alu -119 193 2 251 234 78 13 chr9 7406634 7406711 -134864733 + L1MC/D LINE L1 5800 5881 -1927 387 261 203 39 chr9 7408253 7408460 -134862984 + MIR SINE MIR 12 252 -10 21 36 0 0 chr9 7409131 7409159 -134862285 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr9 7409310 7409350 -134862094 + AT_rich Low_complexity Low_complexity 1 40 0 522 280 63 0 chr9 7409808 7409951 -134861493 - MIR SINE MIR -3 259 108 267 174 167 72 chr9 7409980 7410118 -134861326 + L1ME4a LINE L1 5314 5464 -2344 486 275 53 8 chr9 7410195 7410439 -134861005 + L1ME4a LINE L1 5595 5849 -272 2118 110 3 41 chr9 7413368 7413685 -134857759 - AluSp SINE Alu -8 305 1 1335 210 24 66 chr9 7413891 7414272 -134857172 + MLT1A1 LTR MaLR 1 365 0 839 138 239 0 chr9 7415706 7415873 -134855571 - AluJo SINE Alu -105 207 1 1854 273 150 16 chr9 7416550 7417316 -134854128 + L2 LINE L2 837 1705 -1609 5296 116 15 29 chr9 7417338 7418172 -134853272 - L1PA16 LINE L1 -13 6153 5309 2199 103 3 7 chr9 7418172 7418464 -134852980 - AluSg SINE Alu -19 291 1 5296 116 15 29 chr9 7418464 7418532 -134852912 - L1PA16 LINE L1 -857 5309 5242 599 59 0 12 chr9 7418532 7418617 -134852827 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 5296 116 15 29 chr9 7418617 7418731 -134852713 - L1PA16 LINE L1 -924 5242 5160 310 325 57 46 chr9 7418732 7418842 -134852602 + L2 LINE L2 1701 1808 -1506 501 62 0 0 chr9 7418842 7418907 -134852537 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2115 111 4 0 chr9 7418908 7419188 -134852256 - AluSq SINE Alu -32 281 1 310 325 57 46 chr9 7419188 7419269 -134852175 + L2 LINE L2 1807 1896 -1418 1076 190 143 60 chr9 7419283 7419668 -134851776 - LTR8A LTR ERV1 0 727 311 1380 121 43 5 chr9 7419669 7419876 -134851568 + AluSg/x SINE Alu 77 291 -21 929 160 166 22 chr9 7419914 7420249 -134851195 - LTR29 LTR ERV1 -198 424 1 1946 276 122 41 chr9 7420268 7421331 -134850113 + L2 LINE L2 1937 3090 -223 499 224 65 0 chr9 7421333 7421440 -134850004 + L2 LINE L2 3200 3313 0 1842 185 0 0 chr9 7421778 7422076 -134849368 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr9 7422542 7422571 -134848873 + AT_rich Low_complexity Low_complexity 1 29 0 260 252 41 16 chr9 7423587 7423710 -134847734 + LTR33 LTR ERVL 1 126 -395 241 294 55 40 chr9 7423798 7423999 -134847445 + LTR33 LTR ERVL 303 506 -15 303 286 29 0 chr9 7424711 7424781 -134846663 + C-rich Low_complexity Low_complexity 3 74 0 450 216 29 0 chr9 7424802 7424904 -134846540 - FLAM_C SINE Alu -26 107 3 459 0 0 0 chr9 7426403 7426454 -134844990 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1954 153 0 0 chr9 7426455 7426743 -134844701 - AluSx SINE Alu -24 288 1 235 350 91 0 chr9 7427127 7427270 -134844174 + L2 LINE L2 1813 1968 -1346 517 280 242 22 chr9 7427274 7427638 -134843806 + L2 LINE L2 1723 2166 -1148 308 233 100 33 chr9 7427640 7427760 -134843684 + L2 LINE L2 3159 3286 -27 21 0 0 0 chr9 7427913 7427934 -134843510 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr9 7428779 7428804 -134842640 + (T)n Simple_repeat Simple_repeat 1 25 0 207 305 102 31 chr9 7428918 7429046 -134842398 - MIR SINE MIR -92 170 34 365 187 78 12 chr9 7429800 7429966 -134841478 + (TA)n Simple_repeat Simple_repeat 2 178 0 332 199 54 36 chr9 7429911 7430077 -134841367 + (TATAA)n Simple_repeat Simple_repeat 5 173 0 * 251 254 45 0 chr9 7430159 7430226 -134841218 - MER5B DNA MER1_type -7 171 102 1915 170 0 0 chr9 7430820 7431114 -134840330 - AluJb SINE Alu -18 294 1 223 203 95 0 chr9 7431913 7431987 -134839457 - MIR SINE MIR -132 130 50 722 220 56 33 chr9 7432010 7432224 -134839220 + MER20 DNA MER1_type 1 219 0 324 143 0 0 chr9 7433162 7433218 -134838226 - Alu SINE Alu 0 302 247 23 0 0 0 chr9 7433468 7433491 -134837953 + AT_rich Low_complexity Low_complexity 1 23 0 1769 83 36 7 chr9 7433491 7433769 -134837675 - L1MA5A LINE L1 -1 6296 6011 420 276 70 68 chr9 7434462 7434846 -134836598 + L1ME4a LINE L1 5477 5861 -260 189 107 0 0 chr9 7434853 7434881 -134836563 + (TA)n Simple_repeat Simple_repeat 1 28 0 2223 100 3 0 chr9 7434901 7435190 -134836254 - AluSq SINE Alu -23 290 1 2631 85 26 8 chr9 7438464 7438852 -134832592 + L1MA1 LINE L1 5908 6302 0 718 231 75 6 chr9 7438988 7439161 -134832283 + MER58A DNA MER1_type 39 223 -1 21 0 0 0 chr9 7440534 7440555 -134830889 + AT_rich Low_complexity Low_complexity 1 21 0 2112 122 3 10 chr9 7440753 7441049 -134830395 + AluSx SINE Alu 1 294 -18 711 227 91 91 chr9 7441627 7442187 -134829257 - MER69 DNA AcHobo -207 2319 1760 486 281 52 30 chr9 7442228 7442459 -134828985 - MER69 DNA AcHobo -914 312 77 26 0 0 0 chr9 7442886 7442912 -134828532 + AT_rich Low_complexity Low_complexity 1 26 0 349 290 84 39 chr9 7443064 7443219 -134828225 + MER5B DNA MER1_type 17 178 0 10115 46 18 32 chr9 7443823 7445118 -134826326 - SVA Other Other -6 1380 104 1430 183 129 0 chr9 7445361 7445624 -134825820 - AluJb SINE Alu -5 297 1 1306 206 14 27 chr9 7445878 7446170 -134825274 + AluJb SINE Alu 1 288 -24 260 217 0 0 chr9 7446595 7446655 -134824789 + A-rich Low_complexity Low_complexity 1 60 0 360 0 0 0 chr9 7446728 7446768 -134824676 + (CA)n Simple_repeat Simple_repeat 2 41 0 287 254 0 44 chr9 7447031 7447145 -134824299 - Charlie8 DNA MER1_type -2247 170 62 274 238 12 0 chr9 7447154 7447234 -134824210 + (CA)n Simple_repeat Simple_repeat 2 82 0 576 110 134 0 chr9 7447633 7447760 -134823684 + L1P LINE L1 5254 5397 -764 948 146 139 0 chr9 7447760 7447918 -134823526 + AluSx SINE Alu 19 198 -114 24 32 0 0 chr9 7448262 7448293 -134823151 + AT_rich Low_complexity Low_complexity 1 31 0 203 214 34 51 chr9 7448814 7448931 -134822513 + (CATATA)n Simple_repeat Simple_repeat 3 117 0 2093 118 0 0 chr9 7449090 7449378 -134822066 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr9 7449378 7449399 -134822045 + AT_rich Low_complexity Low_complexity 1 21 0 271 156 0 0 chr9 7449890 7449935 -134821509 + Alu SINE Alu 2 46 -256 29 0 0 0 chr9 7449943 7449972 -134821472 + AT_rich Low_complexity Low_complexity 1 29 0 532 274 117 48 chr9 7450159 7450389 -134821055 - MIR SINE MIR -11 251 6 1331 110 0 6 chr9 7451504 7451686 -134819758 + AluSg/x SINE Alu 119 299 -11 28 29 0 0 chr9 7452199 7452234 -134819210 + AT_rich Low_complexity Low_complexity 1 35 0 2414 69 0 10 chr9 7452340 7452644 -134818800 + AluSc SINE Alu 1 301 -8 1136 153 6 0 chr9 7452644 7452821 -134818623 + AluJb SINE Alu 134 311 -1 345 47 0 0 chr9 7452876 7452919 -134818525 + (TG)n Simple_repeat Simple_repeat 1 43 0 647 174 16 0 chr9 7452919 7453040 -134818404 + L1MC1 LINE L1 6210 6332 -1 1128 151 170 0 chr9 7453160 7453378 -134818066 - AluJo SINE Alu -57 255 1 1539 166 95 14 chr9 7454706 7454989 -134816455 - AluJo SINE Alu -6 306 1 311 188 16 16 chr9 7455252 7455316 -134816128 - MER20 DNA MER1_type -154 65 2 186 43 0 0 chr9 7456144 7456167 -134815277 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 621 260 158 0 chr9 7457442 7457619 -134813825 + MIR SINE MIR 34 238 -24 21 36 0 0 chr9 7458459 7458487 -134812957 + AT_rich Low_complexity Low_complexity 1 28 0 3754 60 0 4 chr9 7458519 7459002 -134812442 - L1PA5 LINE L1 0 6154 5674 1873 57 0 4 chr9 7459002 7459232 -134812212 + AluY SINE Alu 73 301 -10 1171 108 0 0 chr9 7459239 7459396 -134812048 + AluSg/x SINE Alu 138 294 -18 269 193 24 12 chr9 7459714 7459797 -134811647 + (TA)n Simple_repeat Simple_repeat 2 85 0 794 283 87 49 chr9 7459870 7460364 -134811080 - MLT2B1 LTR ERVL -7 513 1 467 198 0 0 chr9 7460366 7460467 -134810977 + L1M4 LINE L1 3821 3921 -2225 414 268 82 64 chr9 7460528 7460621 -134810823 + L1M4 LINE L1 4013 4103 -2043 2257 50 43 0 chr9 7460621 7460900 -134810544 - AluYa5 SINE Alu -20 291 1 414 268 82 64 chr9 7460900 7461026 -134810418 + L1M4 LINE L1 4103 4236 -1910 634 282 60 23 chr9 7461182 7461568 -134809876 + L1M4 LINE L1 4945 5344 -802 2177 113 3 3 chr9 7461572 7461873 -134809571 + AluSx SINE Alu 1 301 -11 218 328 89 89 chr9 7462250 7462497 -134808947 + MIR SINE MIR 13 259 -3 23 68 0 0 chr9 7462516 7462560 -134808884 + AT_rich Low_complexity Low_complexity 1 44 0 668 186 34 8 chr9 7462631 7462749 -134808695 + FLAM_C SINE Alu 3 123 -20 1977 144 3 0 chr9 7463382 7463667 -134807777 - AluSx SINE Alu -26 286 1 21 0 0 0 chr9 7464145 7464166 -134807278 + AT_rich Low_complexity Low_complexity 1 21 0 371 246 39 14 chr9 7464295 7464492 -134806952 - MLT1K LTR MaLR -170 418 165 21 57 0 0 chr9 7465474 7465509 -134805935 + AT_rich Low_complexity Low_complexity 1 35 0 377 312 111 11 chr9 7466356 7466545 -134804899 - L2 LINE L2 -6 3307 3100 180 152 0 0 chr9 7466687 7466720 -134804724 + (TA)n Simple_repeat Simple_repeat 1 33 0 712 189 0 15 chr9 7467644 7467776 -134803668 - FLAM_C SINE Alu -13 130 1 321 262 8 74 chr9 7468504 7468626 -134802818 + MIR SINE MIR 60 173 -89 2093 121 7 0 chr9 7468792 7469089 -134802355 - AluSx SINE Alu -13 299 1 277 241 0 100 chr9 7469887 7470002 -134801442 + MIR SINE MIR 34 137 -71 2141 114 14 0 chr9 7470197 7470486 -134800958 + AluSx SINE Alu 7 299 -13 774 136 0 0 chr9 7471441 7471559 -134799885 - AluJo SINE Alu -173 139 22 21 0 0 0 chr9 7471734 7471755 -134799689 + AT_rich Low_complexity Low_complexity 1 21 0 581 280 0 14 chr9 7472524 7472667 -134798777 - MIR SINE MIR -74 188 48 1397 186 29 7 chr9 7472994 7473268 -134798176 - MLT1-int LTR MaLR -456 915 636 549 238 136 25 chr9 7476263 7476549 -134794895 - L1ME4a LINE L1 0 6121 5804 550 244 62 21 chr9 7476825 7477018 -134794426 - MER112 DNA MER1_type -58 202 2 649 179 8 0 chr9 7477887 7478004 -134793440 + FLAM_C SINE Alu 1 118 -15 486 0 0 0 chr9 7478006 7478060 -134793384 + (CA)n Simple_repeat Simple_repeat 2 55 0 211 180 10 90 chr9 7478223 7478323 -134793121 + T-rich Low_complexity Low_complexity 1 92 0 319 301 164 44 chr9 7479452 7479794 -134791650 + L2 LINE L2 2465 2847 -467 263 360 0 0 chr9 7479986 7480075 -134791369 - L2 LINE L2 -225 3047 2959 2003 148 0 0 chr9 7480148 7480438 -134791006 - AluSx SINE Alu -22 290 1 213 213 0 0 chr9 7480653 7480700 -134790744 + (TG)n Simple_repeat Simple_repeat 2 48 0 969 170 16 6 chr9 7481362 7481544 -134789900 - L1MD1 LINE L1 -5 6237 6054 1661 162 29 35 chr9 7482322 7482636 -134788808 + AluJo SINE Alu 1 312 0 483 18 0 0 chr9 7483107 7483163 -134788281 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 714 308 106 22 chr9 7483164 7483531 -134787913 + L2 LINE L2 2884 3281 -32 1565 180 10 17 chr9 7484232 7484526 -134786918 - AluJo SINE Alu -20 292 1 1529 178 20 49 chr9 7485527 7485831 -134785613 - AluJb SINE Alu -15 297 3 662 200 0 8 chr9 7486201 7486331 -134785113 + FLAM_A SINE Alu 1 129 -4 1859 166 52 28 chr9 7488412 7488737 -134782707 - MER1B DNA MER1_type -6 333 1 249 98 0 0 chr9 7489775 7489816 -134781628 + (CA)n Simple_repeat Simple_repeat 2 42 0 291 253 27 73 chr9 7489876 7490026 -134781418 + L1ME4a LINE L1 5742 5884 -237 2475 58 0 0 chr9 7490124 7490417 -134781027 - AluY SINE Alu -18 293 1 902 89 7 30 chr9 7490439 7490574 -134780870 - L1PB4 LINE L1 -13 6143 6012 253 284 0 11 chr9 7491341 7491436 -134780008 + L1MEd LINE L1 18 111 -6008 215 321 0 37 chr9 7491518 7491599 -134779845 + MIR SINE MIR 116 193 -69 226 240 53 67 chr9 7491975 7492050 -134779394 + L1MEd LINE L1 549 622 -5497 284 273 121 15 chr9 7492077 7492209 -134779235 + MIR3 SINE MIR 31 176 -32 2045 133 0 7 chr9 7492964 7493296 -134778148 + AluSx SINE Alu 1 312 0 32 43 0 0 chr9 7493787 7493833 -134777611 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 7494630 7494662 -134776782 + AT_rich Low_complexity Low_complexity 1 32 0 201 219 24 0 chr9 7495161 7495202 -134776242 - MIR SINE MIR -151 111 70 2084 130 0 0 chr9 7496038 7496331 -134775113 - AluSx SINE Alu -13 299 7 533 215 75 5 chr9 7496459 7496645 -134774799 - L1MA7 LINE L1 0 6291 6093 398 339 0 8 chr9 7496888 7497009 -134774435 - MIR SINE MIR -122 140 21 1862 145 0 17 chr9 7497020 7497310 -134774134 - AluSx SINE Alu -27 285 1 22 0 0 0 chr9 7497460 7497482 -134773962 + AT_rich Low_complexity Low_complexity 1 22 0 2833 119 54 29 chr9 7499020 7499298 -134772146 - LTR22B LTR ERVK 0 492 195 2420 80 3 0 chr9 7499298 7499597 -134771847 + AluSq SINE Alu 1 300 -13 2833 119 54 29 chr9 7499597 7499798 -134771646 - LTR22B LTR ERVK -296 196 1 27 0 0 0 chr9 7501076 7501103 -134770341 + AT_rich Low_complexity Low_complexity 1 27 0 568 181 49 62 chr9 7501798 7502041 -134769403 - Charlie1 DNA MER1_type 0 2761 2522 1504 209 16 16 chr9 7502049 7502370 -134769074 + L1M3e LINE L1 2 322 -6708 2538 238 39 62 chr9 7502370 7503416 -134768028 + L1M3e LINE L1 1216 2245 -4792 1511 270 109 10 chr9 7503417 7503913 -134767531 - Charlie1a DNA MER1_type -907 548 4 1929 163 116 2 chr9 7503930 7504334 -134767110 + Tigger2 DNA MER2_type 1 450 -2268 2007 142 10 10 chr9 7504908 7505217 -134766227 + AluSq SINE Alu 3 311 -2 191 286 14 43 chr9 7505283 7505353 -134766091 + L2 LINE L2 3201 3268 -4 1317 188 7 44 chr9 7506215 7506486 -134764958 - AluJo SINE Alu -14 298 38 306 0 0 0 chr9 7509060 7509094 -134762350 + (CA)n Simple_repeat Simple_repeat 2 35 0 39 50 0 0 chr9 7509625 7509685 -134761759 + AT_rich Low_complexity Low_complexity 1 60 0 2434 82 0 0 chr9 7510264 7510567 -134760877 - AluY SINE Alu -8 303 1 2124 127 3 0 chr9 7510567 7510866 -134760578 - AluSx SINE Alu -11 301 1 1949 164 0 3 chr9 7511077 7511376 -134760068 - AluJo SINE Alu -13 299 2 22 35 0 0 chr9 7511621 7511650 -134759794 + AT_rich Low_complexity Low_complexity 1 29 0 1664 170 112 3 chr9 7512190 7512502 -134758942 - MER7A DNA MER2_type 0 346 3 22 0 0 0 chr9 7514700 7514722 -134756722 + AT_rich Low_complexity Low_complexity 1 22 0 1710 137 19 55 chr9 7514723 7515102 -134756342 - L1MA2 LINE L1 -3 7720 7356 301 70 47 0 chr9 7515112 7515155 -134756289 - L1M LINE L1 -895 6826 6782 189 0 0 0 chr9 7515169 7515190 -134756254 + (TG)n Simple_repeat Simple_repeat 2 22 0 14867 170 24 16 chr9 7515194 7515205 -134756239 - L1MA2 LINE L1 -762 6803 6794 2221 83 24 0 chr9 7515205 7515493 -134755951 - AluSx SINE Alu -17 295 1 14867 170 24 16 chr9 7515493 7518390 -134753054 - L1MA2 LINE L1 -771 6794 3921 5598 39 3 0 chr9 7518390 7519064 -134752380 - L1PA4 LINE L1 -8 6147 5472 14867 170 24 16 chr9 7519064 7519971 -134751473 - L1MA2 LINE L1 -3644 3921 3022 2033 142 3 3 chr9 7519971 7520282 -134751162 + AluSx SINE Alu 1 311 -1 14867 170 24 16 chr9 7520282 7523174 -134748270 - L1MA2 LINE L1 -4543 3022 19 39 60 0 0 chr9 7523594 7523661 -134747783 + AT_rich Low_complexity Low_complexity 1 67 0 1638 156 28 0 chr9 7524404 7524693 -134746751 + L1MC1 LINE L1 6037 6333 0 402 57 0 0 chr9 7525171 7525224 -134746220 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 2053 117 7 0 chr9 7525226 7525509 -134745935 - AluSx SINE Alu -27 285 1 213 196 0 0 chr9 7525652 7525698 -134745746 + (TA)n Simple_repeat Simple_repeat 1 46 0 222 37 0 0 chr9 7525725 7525752 -134745692 + (TG)n Simple_repeat Simple_repeat 2 28 0 226 306 68 41 chr9 7526648 7526795 -134744649 - MIR3 SINE MIR -46 162 12 23 0 0 0 chr9 7527191 7527214 -134744230 + AT_rich Low_complexity Low_complexity 1 23 0 5483 140 45 19 chr9 7528130 7529049 -134742395 - L1MA5A LINE L1 0 6297 5403 1874 169 0 6 chr9 7529049 7529363 -134742081 - AluJb SINE Alu 0 312 1 5483 140 45 19 chr9 7529363 7530280 -134741164 - L1MA5A LINE L1 -894 5403 4408 253 224 198 35 chr9 7530808 7530924 -134740520 + L2 LINE L2 3179 3313 0 259 370 8 0 chr9 7532716 7532835 -134738609 - L1MC/D LINE L1 -2153 6450 6331 241 241 36 36 chr9 7533142 7533254 -134738190 - L1MC/D LINE L1 -1070 5871 5760 512 278 159 48 chr9 7533335 7533536 -134737908 - L1MC/D LINE L1 -5082 1849 1672 2205 155 63 17 chr9 7533536 7533950 -134737494 - Tigger2a DNA MER2_type 0 434 2 512 278 159 48 chr9 7533950 7534100 -134737344 - L1MC/D LINE L1 -5259 1672 1459 544 223 107 22 chr9 7534100 7534324 -134737120 - L1MEd LINE L1 -4313 1997 1755 342 169 0 0 chr9 7534345 7534410 -134737034 + CT-rich Low_complexity Low_complexity 4 68 0 423 92 0 0 chr9 7534419 7534484 -134736960 + (TG)n Simple_repeat Simple_repeat 2 66 0 937 305 45 34 chr9 7534484 7535135 -134736309 - L1MEd LINE L1 -4555 1755 1056 2011 136 33 9 chr9 7535143 7535475 -134735969 - MER2 DNA MER2_type -5 340 1 449 291 58 16 chr9 7535564 7535822 -134735622 - L1MC/D LINE L1 -5041 1382 1114 404 265 68 0 chr9 7536201 7536318 -134735126 - MIR SINE MIR -98 164 40 530 280 108 11 chr9 7536914 7537100 -134734344 + MER58A DNA MER1_type 21 224 0 290 370 62 0 chr9 7537101 7537263 -134734181 + MIR SINE MIR 80 251 -11 196 320 144 49 chr9 7538000 7538284 -134733160 - L2 LINE L2 -2 3311 3001 639 303 213 15 chr9 7538479 7539086 -134732358 - L2 LINE L2 -684 2630 1904 338 300 86 7 chr9 7541668 7541808 -134729636 + Charlie8 DNA MER1_type 7 157 -2260 232 340 186 16 chr9 7542227 7542474 -134728970 + L3b LINE CR1 1284 1572 -11 496 183 8 11 chr9 7545913 7546061 -134725383 - MER20 DNA MER1_type -9 210 3 218 191 0 0 chr9 7546404 7546446 -134724998 + L2 LINE L2 3271 3312 -1 438 36 0 0 chr9 7546912 7546968 -134724476 + (GA)n Simple_repeat Simple_repeat 2 57 0 200 200 0 0 chr9 7548365 7548400 -134723044 + CT-rich Low_complexity Low_complexity 2 36 0 1595 114 0 4 chr9 7549030 7549258 -134722186 + AluSc SINE Alu 76 302 -7 251 229 383 11 chr9 7551491 7551666 -134719778 + MIR SINE MIR 21 260 -2 1462 254 34 23 chr9 7552356 7552402 -134719042 + Charlie1 DNA MER1_type 1428 1472 -1289 409 288 54 44 chr9 7552402 7552607 -134718837 + MER63A DNA MER1_type 4 210 0 1462 254 34 23 chr9 7552607 7553000 -134718444 + Charlie1 DNA MER1_type 1472 1872 -889 950 184 40 10 chr9 7552997 7553198 -134718246 + Charlie1 DNA MER1_type 1902 2108 -653 * 694 163 0 0 chr9 7553203 7553326 -134718118 - AluJo SINE Alu -7 305 183 * 721 201 0 14 chr9 7553317 7553461 -134717983 - AluJo SINE Alu -170 142 1 2587 164 93 21 chr9 7553469 7554074 -134717370 + Charlie1 DNA MER1_type 2114 2761 0 2231 92 0 0 chr9 7554505 7554838 -134716606 - AluSc SINE Alu 0 333 1 318 249 46 136 chr9 7554917 7555330 -134716114 - HAL1 LINE L1 -29 2478 2103 323 252 67 17 chr9 7555332 7555451 -134715993 - HAL1 LINE L1 -540 1967 1843 * 409 278 112 0 chr9 7555441 7555610 -134715834 - HAL1 LINE L1 -1602 905 718 1366 280 86 39 chr9 7555616 7556037 -134715407 - HAL1 LINE L1 -1828 679 279 2220 93 0 3 chr9 7556037 7556326 -134715118 - AluY SINE Alu -23 288 1 1366 280 86 39 chr9 7556326 7556432 -134715012 - HAL1 LINE L1 -2228 279 179 1681 194 13 7 chr9 7556432 7556742 -134714702 - AluJb SINE Alu 0 312 1 1366 280 86 39 chr9 7556742 7556855 -134714589 - HAL1 LINE L1 -2328 179 8 27 0 0 0 chr9 7557293 7557320 -134714124 + AT_rich Low_complexity Low_complexity 1 27 0 236 167 0 21 chr9 7557574 7557622 -134713822 - L2 LINE L2 0 3313 3267 449 230 40 55 chr9 7558023 7558223 -134713221 + Charlie5 DNA MER1_type 1 197 -2415 812 180 64 21 chr9 7558227 7558460 -134712984 + Charlie5 DNA MER1_type 2352 2594 -18 21 0 0 0 chr9 7561685 7561706 -134709738 + AT_rich Low_complexity Low_complexity 1 21 0 2368 72 0 3 chr9 7561862 7562154 -134709290 - AluY SINE Alu -20 291 1 252 354 53 0 chr9 7562530 7562643 -134708801 + MIR SINE MIR 11 129 -133 2411 102 0 0 chr9 7562742 7563055 -134708389 - AluSq SINE Alu 0 313 1 237 331 55 8 chr9 7563111 7563238 -134708206 + MIR SINE MIR 130 262 0 627 167 0 0 chr9 7563474 7563570 -134707874 + FRAM SINE Alu 51 146 -30 195 42 0 0 chr9 7563572 7563596 -134707848 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 380 283 101 0 chr9 7563596 7563734 -134707710 - L1MD2 LINE L1 -13 6346 6195 404 300 77 15 chr9 7563830 7564157 -134707287 + L1ME1 LINE L1 1868 2214 -4182 4371 247 79 35 chr9 7564166 7565879 -134705565 + L1ME1 LINE L1 3445 5351 -884 318 95 0 0 chr9 7565879 7565921 -134705523 + 5S rRNA rRNA 1 42 -79 4371 247 79 35 chr9 7565921 7566815 -134704629 + L1ME1 LINE L1 5351 6204 -31 501 156 0 0 chr9 7566871 7566961 -134704483 - L1MA6 LINE L1 0 6300 6211 189 238 111 0 chr9 7567358 7567421 -134704023 + MIR SINE MIR 178 247 -15 194 268 61 24 chr9 7567460 7567542 -134703902 - MIR3 SINE MIR -118 90 6 1993 149 0 10 chr9 7568222 7568524 -134702920 - AluSx SINE Alu -12 300 2 1563 182 49 56 chr9 7569365 7569789 -134701655 + MSTB1 LTR MaLR 3 416 -16 478 114 0 0 chr9 7569868 7569938 -134701506 - AluSp/q SINE Alu -10 303 234 219 373 36 0 chr9 7570336 7570446 -134700998 - MIR SINE MIR -146 116 3 195 129 0 0 chr9 7570512 7570543 -134700901 + (CAA)n Simple_repeat Simple_repeat 3 33 0 364 291 68 0 chr9 7571539 7571656 -134699788 - MIR SINE MIR -76 186 62 22 0 0 0 chr9 7572147 7572169 -134699275 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 7572236 7572257 -134699187 + AT_rich Low_complexity Low_complexity 1 21 0 567 209 0 9 chr9 7572872 7572987 -134698457 - MER68 LTR ERV1 -6 556 443 1510 140 34 23 chr9 7573000 7573265 -134698179 - MER68 LTR ERV1 -285 277 10 2043 142 7 0 chr9 7573377 7573680 -134697764 - AluSx SINE Alu -7 305 1 531 294 62 5 chr9 7573806 7574017 -134697427 + Charlie2 DNA MER1_type 12 234 -2628 601 266 131 26 chr9 7574158 7574523 -134696921 + MLT1J1 LTR MaLR 16 422 -28 760 151 45 50 chr9 7574574 7574773 -134696671 + Charlie2a DNA MER1_type 1466 1663 -1199 1028 199 50 9 chr9 7577214 7577435 -134694009 - MER46A DNA MER2_type -1 235 6 1686 175 42 9 chr9 7577438 7577769 -134693675 - MER7A DNA MER2_type -6 340 1 333 0 0 0 chr9 7577770 7577807 -134693637 + (TG)n Simple_repeat Simple_repeat 2 38 0 477 260 106 31 chr9 7578242 7578469 -134692975 + MLT1I LTR MaLR 141 384 -25 445 287 154 0 chr9 7578672 7578815 -134692629 + MIR SINE MIR 70 234 -28 512 344 75 40 chr9 7578836 7579234 -134692210 - L2 LINE L2 -10 3262 2851 248 252 207 9 chr9 7579246 7579357 -134692087 + MIR3 SINE MIR 9 141 -67 26 0 0 0 chr9 7579719 7579745 -134691699 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 7579900 7579931 -134691513 + AT_rich Low_complexity Low_complexity 1 31 0 2318 87 0 7 chr9 7579932 7580230 -134691214 + AluSx SINE Alu 1 296 -16 254 225 84 0 chr9 7580855 7580926 -134690518 + Charlie2 DNA MER1_type 93 169 -2613 2150 215 116 26 chr9 7581075 7581971 -134689473 + Charlie2 DNA MER1_type 1847 2823 -39 373 243 83 95 chr9 7582012 7582181 -134689263 + MER5A DNA MER1_type 1 167 -22 183 80 0 0 chr9 7582898 7582923 -134688521 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 7585630 7585651 -134685793 + AT_rich Low_complexity Low_complexity 1 21 0 215 238 284 4 chr9 7586251 7586379 -134685065 - MIR SINE MIR -51 211 41 27 0 0 0 chr9 7587421 7587448 -134683996 + AT_rich Low_complexity Low_complexity 1 27 0 604 190 127 16 chr9 7587650 7587873 -134683571 - Charlie4 DNA MER1_type -20 1941 225 307 319 67 22 chr9 7588045 7588180 -134683264 - MIR SINE MIR -15 247 107 353 0 0 0 chr9 7588408 7588452 -134682992 - L1PA3 LINE L1 -3 6152 6109 488 228 62 28 chr9 7593678 7593823 -134677621 + MER5A DNA MER1_type 4 153 -36 201 206 27 27 chr9 7593932 7594005 -134677439 + T-rich Low_complexity Low_complexity 6 78 0 664 198 43 0 chr9 7594178 7594294 -134677150 + FLAM_C SINE Alu 6 126 -17 2231 123 0 0 chr9 7594398 7594698 -134676746 - AluSx SINE Alu -12 300 1 267 152 0 0 chr9 7594804 7594850 -134676594 + T-rich Low_complexity Low_complexity 3 48 0 216 0 0 0 chr9 7596368 7596392 -134675052 + (T)n Simple_repeat Simple_repeat 1 24 0 412 311 76 58 chr9 7597943 7598168 -134673276 + L2 LINE L2 3044 3272 0 316 346 53 0 chr9 7598222 7598355 -134673089 + MER91C DNA MER1_type 1 140 0 444 295 90 13 chr9 7599304 7599460 -134671984 + MIR SINE MIR 14 181 -81 218 167 0 0 chr9 7599501 7599537 -134671907 + (CTG)n Simple_repeat Simple_repeat 3 38 0 268 330 10 10 chr9 7599564 7599661 -134671783 - MIR SINE MIR -108 154 58 31 26 0 0 chr9 7600706 7600744 -134670700 + AT_rich Low_complexity Low_complexity 1 38 0 648 196 0 0 chr9 7600746 7600853 -134670591 - FLAM_C SINE Alu -36 107 1 225 0 0 0 chr9 7601906 7601931 -134669513 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2027 154 0 0 chr9 7602290 7602595 -134668849 - AluJb SINE Alu -7 305 1 22 0 0 0 chr9 7603321 7603343 -134668101 + AT_rich Low_complexity Low_complexity 1 22 0 1319 133 246 13 chr9 7603869 7604170 -134667274 + THE1C LTR MaLR 5 375 0 240 240 80 30 chr9 7604221 7604321 -134667123 - L1MC5 LINE L1 -1162 6799 6695 23 0 0 0 chr9 7604465 7604488 -134666956 + AT_rich Low_complexity Low_complexity 1 23 0 795 202 32 87 chr9 7605202 7605295 -134666149 - MIR SINE MIR -10 252 155 1022 184 108 0 chr9 7605295 7605507 -134665937 + MER46A DNA MER2_type 2 236 0 795 202 32 87 chr9 7605507 7605666 -134665778 - MIR SINE MIR -107 155 14 237 308 88 22 chr9 7605650 7605741 -134665703 - L2 LINE L2 -343 2970 2874 * 299 156 31 0 chr9 7608094 7608158 -134663286 - MER116 DNA Mariner -2 78 13 1524 161 93 21 chr9 7608882 7609173 -134662271 + AluJo SINE Alu 1 312 0 305 321 102 21 chr9 7611011 7611198 -134660246 - MIR SINE MIR 0 262 61 370 208 0 10 chr9 7611584 7611685 -134659759 - L1M4 LINE L1 -1424 4722 4623 378 0 0 0 chr9 7611685 7611727 -134659717 + (CA)n Simple_repeat Simple_repeat 2 43 0 457 219 123 102 chr9 7613410 7613831 -134657613 + Charlie4a DNA MER1_type 59 488 -20 306 343 96 36 chr9 7613919 7614085 -134657359 + L2 LINE L2 3076 3251 -21 253 186 119 51 chr9 7615045 7615163 -134656281 - L1ME4a LINE L1 -46 6075 5950 1615 221 88 24 chr9 7615168 7615666 -134655778 - MLT1H LTR MaLR -19 530 1 2306 119 111 3 chr9 7616086 7616298 -134655146 - MSTA LTR MaLR 0 428 240 243 0 0 0 chr9 7616298 7616325 -134655119 + (CA)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr9 7616324 7616344 -134655100 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2306 119 111 3 chr9 7616325 7616517 -134654927 - MSTA LTR MaLR -188 240 1 205 271 45 98 chr9 7616536 7616669 -134654775 + MIR SINE MIR 64 189 -73 193 300 118 64 chr9 7617597 7617707 -134653737 - L2 LINE L2 0 3272 3157 327 200 100 20 chr9 7618132 7618232 -134653212 - MIR SINE MIR -82 180 73 215 327 51 63 chr9 7619088 7619342 -134652102 + L2 LINE L2 2726 2976 -338 212 179 0 0 chr9 7620106 7620145 -134651299 - MIR SINE MIR -6 256 218 257 181 0 84 chr9 7620175 7620258 -134651186 - L1M4 LINE L1 -5870 672 597 2021 267 104 27 chr9 7620489 7621071 -134650373 + L1MC4 LINE L1 6459 6995 -1047 387 119 0 0 chr9 7621071 7621138 -134650306 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 2021 267 104 27 chr9 7621138 7621681 -134649763 + L1MC4 LINE L1 6995 7671 -371 239 250 0 0 chr9 7621801 7621849 -134649595 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 281 129 0 165 chr9 7621898 7621983 -134649461 + L1MC4 LINE L1 7960 8030 -12 23 33 0 0 chr9 7621987 7622017 -134649427 + AT_rich Low_complexity Low_complexity 1 30 0 204 304 0 0 chr9 7622066 7622122 -134649322 + T-rich Low_complexity Low_complexity 2 57 0 487 140 131 19 chr9 7622500 7622607 -134648837 - MSTC LTR MaLR -309 119 1 234 91 0 0 chr9 7622829 7622862 -134648582 + (TG)n Simple_repeat Simple_repeat 2 34 0 239 324 39 39 chr9 7623592 7623694 -134647750 - L2 LINE L2 -1 3271 3170 690 277 37 16 chr9 7623809 7624051 -134647393 - MIR SINE MIR 0 262 16 1836 144 0 33 chr9 7624813 7625119 -134646325 - AluJo SINE Alu -8 304 9 605 119 83 0 chr9 7625442 7625551 -134645893 - MLT2B1 LTR ERVL 0 520 403 912 121 0 0 chr9 7625552 7625676 -134645768 - AluJb SINE Alu -188 124 1 369 175 62 0 chr9 7630154 7630234 -134641210 - L1M4 LINE L1 -852 5294 5210 2599 189 32 15 chr9 7630245 7630909 -134640535 - L1ME LINE L1 -369 5797 5123 23 0 0 0 chr9 7631044 7631067 -134640377 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 7632127 7632150 -134639294 + AT_rich Low_complexity Low_complexity 1 23 0 1858 163 0 16 chr9 7632591 7632897 -134638547 + AluJo SINE Alu 1 301 -11 1773 183 0 10 chr9 7633048 7633354 -134638090 + AluJb SINE Alu 1 303 -9 1668 147 0 11 chr9 7633860 7634125 -134637319 - MER50 LTR ERV1 -38 696 435 1326 129 26 35 chr9 7634122 7634354 -134637090 - MER50 LTR ERV1 -504 230 1 * 219 158 35 18 chr9 7634376 7634433 -134637011 + T-rich Low_complexity Low_complexity 1 58 0 335 398 8 0 chr9 7634745 7634863 -134636581 - L2 LINE L2 -25 3247 3129 624 310 105 29 chr9 7635044 7635238 -134636206 - L2 LINE L2 -457 2857 2679 1214 126 10 20 chr9 7635238 7635406 -134636038 + MER107 DNA MER1_type 1 168 -29 182 36 0 36 chr9 7635406 7635434 -134636010 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1214 126 10 20 chr9 7635434 7635464 -134635980 + MER107 DNA MER1_type 168 197 0 624 310 105 29 chr9 7635464 7635756 -134635688 - L2 LINE L2 -635 2679 2334 23 0 0 0 chr9 7636154 7636177 -134635267 + AT_rich Low_complexity Low_complexity 1 23 0 654 169 81 16 chr9 7636347 7636471 -134634973 - FLAM_C SINE Alu -10 133 2 189 0 0 0 chr9 7636912 7636933 -134634511 + (TG)n Simple_repeat Simple_repeat 2 22 0 635 152 0 139 chr9 7638165 7638330 -134633114 - FLAM_C SINE Alu 0 143 2 214 258 135 0 chr9 7638528 7638617 -134632827 + MIR3 SINE MIR 85 185 -23 534 310 82 71 chr9 7639574 7640109 -134631335 - L3 LINE CR1 -50 1527 987 848 174 192 11 chr9 7640122 7640398 -134631046 + L1ME4a LINE L1 5793 6118 -3 361 241 167 30 chr9 7641765 7641884 -134629560 + MIR SINE MIR 17 118 -144 4585 175 108 125 chr9 7641884 7643665 -134627779 - MER52A LTR ERV1 0 1755 4 361 241 167 30 chr9 7643665 7643750 -134627694 + MIR SINE MIR 118 238 -24 194 247 130 0 chr9 7644575 7644652 -134626792 + L2 LINE L2 3162 3248 -24 795 161 0 0 chr9 7645087 7645211 -134626233 + FLAM_C SINE Alu 1 124 -9 1407 150 80 36 chr9 7645468 7645742 -134625702 + AluJo SINE Alu 1 286 -26 699 269 50 17 chr9 7646204 7646501 -134624943 + L1ME4a LINE L1 5599 5905 -216 1508 142 46 7 chr9 7646504 7646786 -134624658 + L1MB3 LINE L1 5891 6183 0 894 110 7 29 chr9 7647163 7647299 -134624145 - FLAM_C SINE Alu 0 133 1 232 333 39 16 chr9 7647454 7647583 -134623861 - MARNA DNA Mariner -178 408 277 456 244 59 7 chr9 7647746 7647881 -134623563 - LTR67 LTR ERVL -8 549 408 180 0 0 0 chr9 7648001 7648021 -134623423 + (CTG)n Simple_repeat Simple_repeat 1 20 0 37874 84 14 8 chr9 7649418 7655519 -134615925 - L1PA6 LINE L1 -2 6152 13 647 222 7 15 chr9 7657207 7657342 -134614102 - MER119 DNA MER1_type -1 582 449 396 272 76 0 chr9 7657360 7657452 -134613992 - MER119 DNA MER1_type -478 105 7 309 198 35 78 chr9 7658810 7658926 -134612518 + MIR SINE MIR 102 212 -50 240 86 0 0 chr9 7660499 7660534 -134610910 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr9 7660714 7660747 -134610697 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr9 7661202 7661241 -134610203 + AT_rich Low_complexity Low_complexity 1 39 0 501 235 9 17 chr9 7661301 7661416 -134610028 - MER81 DNA DNA 0 114 1 2217 111 0 19 chr9 7661958 7662274 -134609170 + AluSq SINE Alu 1 310 -3 1458 161 96 38 chr9 7662841 7663132 -134608312 + AluJb SINE Alu 1 308 -4 2280 103 7 0 chr9 7663390 7663691 -134607753 - AluSc SINE Alu -6 303 1 1385 114 31 22 chr9 7664878 7665106 -134606338 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr9 7665887 7665911 -134605533 + AT_rich Low_complexity Low_complexity 1 24 0 200 344 33 0 chr9 7667073 7667163 -134604281 - L2 LINE L2 -6 3266 3174 234 280 122 0 chr9 7669999 7670106 -134601338 - MIR3 SINE MIR -19 189 70 227 176 221 15 chr9 7670161 7670229 -134601215 - MLT1G1 LTR MaLR -36 559 478 279 306 68 27 chr9 7672014 7672161 -134599283 - MIR SINE MIR -13 249 97 1088 167 63 9 chr9 7672331 7672553 -134598891 + L1ME1 LINE L1 5928 6161 -5 249 324 69 6 chr9 7672666 7672839 -134598605 - L2 LINE L2 -1153 2161 1978 1051 284 39 56 chr9 7672980 7673392 -134598052 - L1MDa LINE L1 -6079 461 57 2214 117 10 0 chr9 7673419 7673728 -134597716 - AluSx SINE Alu 0 312 1 2083 184 86 4 chr9 7674129 7674595 -134596849 + MLT1D LTR MaLR 2 505 0 503 196 41 0 chr9 7674784 7674895 -134596549 - L1MB7 LINE L1 0 6174 6055 1533 181 83 0 chr9 7674950 7675226 -134596218 - AluJb SINE Alu -13 299 1 521 180 54 31 chr9 7675867 7676105 -134595339 + MER46C DNA MER2_type 61 338 0 2347 187 20 47 chr9 7676267 7676409 -134595035 + MLT2B2 LTR ERVL 1 145 -370 2728 98 8 0 chr9 7676409 7676768 -134594676 + THE1B LTR MaLR 3 364 0 2347 187 20 47 chr9 7676768 7677118 -134594326 + MLT2B2 LTR ERVL 145 480 -35 248 224 0 0 chr9 7677149 7677207 -134594237 + MLT2B2 LTR ERVL 458 515 0 6422 64 0 3 chr9 7677226 7678008 -134593436 + LTR17 LTR ERV1 1 780 0 312 370 60 10 chr9 7679190 7679390 -134592054 + MIR SINE MIR 21 230 -32 216 0 0 0 chr9 7681054 7681078 -134590366 + (T)n Simple_repeat Simple_repeat 1 24 0 185 283 98 22 chr9 7681148 7681240 -134590204 + L2 LINE L2 3209 3307 -6 595 234 13 19 chr9 7681243 7681397 -134590047 + MIR SINE MIR 88 240 -22 187 220 20 0 chr9 7681428 7681478 -134589966 + L2 LINE L2 3263 3313 0 1606 159 58 18 chr9 7681531 7681808 -134589636 - AluJo SINE Alu -16 296 9 2377 105 48 20 chr9 7681999 7682352 -134589092 - THE1B LTR MaLR -1 363 1 202 292 6 123 chr9 7683224 7683287 -134588157 + MER5B DNA MER1_type 3 72 -106 2237 112 3 0 chr9 7683287 7683590 -134587854 + AluSq SINE Alu 1 304 -9 202 292 6 123 chr9 7683590 7683697 -134587747 + MER5B DNA MER1_type 72 153 -25 306 269 129 65 chr9 7683815 7684001 -134587443 + MIR SINE MIR 20 217 -45 321 292 29 22 chr9 7684246 7684383 -134587061 + HAL1 LINE L1 1 138 -2369 677 228 61 6 chr9 7684412 7684592 -134586852 + HAL1 LINE L1 1562 1751 -756 777 340 54 4 chr9 7684618 7684897 -134586547 + LTR33 LTR ERVL 48 340 -181 1295 239 49 72 chr9 7684917 7685487 -134585957 + HAL1 LINE L1 1836 2392 -115 27 29 0 0 chr9 7686788 7686822 -134584622 + AT_rich Low_complexity Low_complexity 1 34 0 2117 134 0 17 chr9 7686822 7687121 -134584323 - AluSx SINE Alu -16 296 3 268 319 141 16 chr9 7687529 7687714 -134583730 - MIR SINE MIR -8 254 47 681 98 0 0 chr9 7688827 7688939 -134582505 + (TCCA)n Simple_repeat Simple_repeat 3 114 0 1275 84 0 0 chr9 7688953 7689240 -134582204 + (TCCA)n Simple_repeat Simple_repeat 1 287 0 288 354 9 0 chr9 7689242 7689355 -134582089 - L2 LINE L2 -14 3299 3186 406 253 0 0 chr9 7690374 7690473 -134580971 + L1MC/D LINE L1 5706 5804 -2004 2217 282 131 25 chr9 7690577 7692021 -134579423 + L2 LINE L2 1481 3084 -229 382 281 44 0 chr9 7692059 7692173 -134579271 - MER91C DNA MER1_type -17 123 5 1065 52 40 12 chr9 7692214 7692387 -134579057 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2112 132 7 0 chr9 7692389 7692685 -134578759 - AluSx SINE Alu -14 298 1 323 290 145 0 chr9 7692689 7692820 -134578624 + L2 LINE L2 3164 3313 0 307 303 13 26 chr9 7692842 7692997 -134578447 + HAL1b LINE L1 1189 1341 -7 471 269 140 5 chr9 7693012 7693205 -134578239 + MIR SINE MIR 30 248 -14 213 120 60 0 chr9 7693225 7693275 -134578169 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1793 173 3 3 chr9 7694087 7694371 -134577073 + AluJo SINE Alu 5 288 -24 837 282 50 31 chr9 7696612 7696935 -134574509 + HAL1 LINE L1 11 339 -2168 4842 128 11 7 chr9 7697314 7698059 -134573385 - L1MC1 LINE L1 -1 6332 5585 2101 100 0 4 chr9 7698247 7698518 -134572926 + AluSq SINE Alu 5 274 -39 880 228 46 32 chr9 7698580 7698799 -134572645 - MER58A DNA MER1_type -2 222 1 661 283 79 18 chr9 7698884 7699163 -134572281 - MLT1K LTR MaLR -2 586 291 668 154 30 124 chr9 7699307 7699508 -134571936 + MER5A DNA MER1_type 3 184 -5 232 268 82 10 chr9 7699526 7699623 -134571821 + L2 LINE L2 3121 3224 -48 1614 164 98 14 chr9 7700362 7700648 -134570796 - AluSx SINE Alu -2 310 1 994 199 92 5 chr9 7701058 7701264 -134570180 + MER58A DNA MER1_type 1 224 0 628 152 0 9 chr9 7701382 7701487 -134569957 - AluJ SINE Alu -19 293 190 899 150 0 0 chr9 7701494 7701627 -134569817 - AluJ SINE Alu -179 133 1 403 199 87 132 chr9 7701634 7702079 -134569365 - L1MC4 LINE L1 -1 8041 7549 271 270 22 31 chr9 7704614 7704752 -134566692 - MLT1J LTR MaLR -339 172 110 268 200 125 12 chr9 7704747 7704827 -134566617 - MLT1L LTR MaLR -524 91 3 * 244 184 28 138 chr9 7705596 7705705 -134565739 - MER5A DNA MER1_type -30 159 63 204 278 40 71 chr9 7705772 7705898 -134565546 - MIR SINE MIR -19 243 122 248 75 0 25 chr9 7706306 7706346 -134565098 + (GA)n Simple_repeat Simple_repeat 2 40 0 548 270 56 19 chr9 7706707 7706920 -134564524 - MIR SINE MIR -26 236 17 1565 147 13 63 chr9 7707958 7708258 -134563186 - AluJo SINE Alu -23 289 5 620 284 110 78 chr9 7708866 7709292 -134562152 + LTR67 LTR ERVL 115 554 -3 637 196 0 0 chr9 7709341 7709443 -134562001 + FLAM_C SINE Alu 17 118 -25 270 0 0 0 chr9 7709447 7709477 -134561967 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2216 116 10 0 chr9 7709804 7710097 -134561347 - AluSx SINE Alu -16 296 1 34272 93 55 10 chr9 7710323 7716196 -134555248 + L1PA6 LINE L1 11 6153 -1 195 362 17 9 chr9 7716219 7716335 -134555109 + L2 LINE L2 2942 3058 -214 421 234 81 16 chr9 7716921 7717069 -134554375 + MIR3 SINE MIR 18 157 -51 249 291 13 0 chr9 7717285 7717364 -134554080 + MLT1L LTR MaLR 1 80 -535 249 108 0 0 chr9 7717603 7717640 -134553804 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 461 151 12 0 chr9 7717791 7717877 -134553567 + CT-rich Low_complexity Low_complexity 4 90 0 214 311 0 0 chr9 7718581 7718642 -134552802 - L2 LINE L2 -9 3263 3203 26 0 0 0 chr9 7718649 7718675 -134552769 + AT_rich Low_complexity Low_complexity 1 26 0 875 296 88 21 chr9 7718712 7719185 -134552259 + MLT2F LTR ERVL 1 434 -229 484 237 22 22 chr9 7719203 7719342 -134552102 + MLT2E LTR ERVL 475 613 -15 233 348 8 39 chr9 7719374 7719466 -134551978 + MLT1-int LTR MaLR 292 385 -986 2514 118 6 6 chr9 7719466 7719830 -134551614 - THE1B LTR MaLR 0 364 1 233 348 8 39 chr9 7719830 7719996 -134551448 + MLT1-int LTR MaLR 385 542 -829 24 0 0 0 chr9 7720398 7720422 -134551022 + AT_rich Low_complexity Low_complexity 1 24 0 760 333 68 12 chr9 7720655 7720994 -134550450 + LTR16C LTR ERVL 133 490 -1 186 321 24 0 chr9 7721113 7721197 -134550247 - L2 LINE L2 -315 2957 2872 * 234 333 29 0 chr9 7721188 7721257 -134550187 - MER91A DNA MER1_type -7 189 119 360 310 26 0 chr9 7721303 7721419 -134550025 - MER91A DNA MER1_type -40 156 38 273 263 38 0 chr9 7721821 7721901 -134549543 + MLT1J2 LTR MaLR 67 149 -301 227 196 0 20 chr9 7722573 7722624 -134548820 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 85 0 0 chr9 7723228 7723287 -134548157 + (TG)n Simple_repeat Simple_repeat 1 59 0 229 250 42 90 chr9 7723401 7723545 -134547899 - MIR SINE MIR 0 262 126 696 224 56 28 chr9 7724159 7724338 -134547106 - MIR SINE MIR -66 196 13 1653 177 24 3 chr9 7724417 7724711 -134546733 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 7724714 7724739 -134546705 + (CAA)n Simple_repeat Simple_repeat 3 27 0 295 299 120 33 chr9 7725342 7725526 -134545918 - MIR SINE MIR -6 256 57 636 167 0 0 chr9 7725827 7725917 -134545527 - AluJ/FLAM SINE Alu -221 91 2 4640 169 63 3 chr9 7726284 7727171 -134544273 + L1MD1 LINE L1 5292 6231 -11 274 231 0 0 chr9 7727173 7727238 -134544206 + MARNA DNA Mariner 327 391 -195 316 226 0 0 chr9 7727452 7727514 -134543930 - MER21B LTR ERV1 -144 719 658 * 3016 99 39 27 chr9 7727508 7727994 -134543450 - LTR21A LTR ERV1 -13 492 1 1393 188 82 36 chr9 7727996 7728300 -134543144 - MER21B LTR ERV1 -202 661 344 434 194 155 0 chr9 7728362 7728465 -134542979 - MER21B LTR ERV1 -647 216 98 376 127 228 0 chr9 7728490 7728569 -134542875 - FRAM SINE Alu -2 164 68 563 176 0 0 chr9 7728593 7728678 -134542766 - FRAM/FAM SINE Alu -92 84 1 397 210 25 0 chr9 7728697 7728778 -134542666 - MER21B LTR ERV1 -760 103 21 366 309 9 9 chr9 7728941 7729051 -134542393 - MIR SINE MIR -60 148 39 757 271 65 0 chr9 7729790 7730004 -134541440 - MIR SINE MIR -13 249 22 1984 123 3 49 chr9 7730005 7730330 -134541114 - AluJb SINE Alu -2 310 1 265 242 61 53 chr9 7731517 7731649 -134539795 - L2 LINE L2 -23 3290 3158 2446 178 48 85 chr9 7731717 7732256 -134539188 + LTR40a LTR ERVL 1 519 0 306 280 67 16 chr9 7733431 7733624 -134537820 + L1MEd LINE L1 638 840 -5279 1006 196 6 0 chr9 7733682 7733855 -134537589 + L1MDa LINE L1 19 192 -6348 * 2872 181 120 107 chr9 7733853 7734153 -134537291 + L1MDa LINE L1 807 1102 -5438 1725 189 3 7 chr9 7734153 7734454 -134536990 + AluJo SINE Alu 1 300 -12 2872 181 120 107 chr9 7734454 7735169 -134536275 + L1MDa LINE L1 1102 1835 -4705 1077 154 66 0 chr9 7735604 7735786 -134535658 - AluSc SINE Alu -2 307 114 2789 129 35 2 chr9 7735949 7736374 -134535070 + Tigger2 DNA MER2_type 2280 2718 0 207 195 0 24 chr9 7736655 7736681 -134534763 + CT-rich Low_complexity Low_complexity 2 28 -13 2201 108 3 10 chr9 7736681 7736995 -134534449 - AluSx SINE Alu 0 312 1 207 195 0 24 chr9 7736995 7737009 -134534435 + CT-rich Low_complexity Low_complexity 28 41 0 276 261 165 17 chr9 7737320 7737435 -134534009 + MIR3 SINE MIR 13 144 -64 379 299 25 80 chr9 7737492 7737693 -134533751 - MLT1J LTR MaLR -104 407 218 246 65 0 0 chr9 7737722 7737753 -134533691 - MLT1J2 LTR MaLR -356 94 64 257 235 20 0 chr9 7739232 7739283 -134532161 - MLT1K LTR MaLR 0 588 537 2038 141 76 17 chr9 7740063 7740417 -134531027 - THE1C LTR MaLR 0 375 1 242 314 157 0 chr9 7740695 7740816 -134530628 + MIR SINE MIR 11 150 -112 345 229 41 74 chr9 7741093 7741127 -134530317 + MIR SINE MIR 141 175 -87 536 313 44 0 chr9 7741127 7741309 -134530135 + MER91B DNA MER1_type 1 190 0 345 229 41 74 chr9 7741309 7741396 -134530048 + MIR SINE MIR 175 258 -4 256 300 43 21 chr9 7741556 7741696 -134529748 - L1MC4 LINE L1 -15 8027 7885 3362 210 26 41 chr9 7741836 7741890 -134529554 - L1ME2 LINE L1 -10 6154 6101 2286 105 0 0 chr9 7741890 7742185 -134529259 + AluSx SINE Alu 1 295 -17 3362 210 26 41 chr9 7742185 7742254 -134529190 - L1ME2 LINE L1 -63 6101 6032 2232 112 3 3 chr9 7742254 7742566 -134528878 + AluSx SINE Alu 1 312 0 3362 210 26 41 chr9 7742566 7743289 -134528155 - L1ME2 LINE L1 -132 6032 5320 1019 222 48 4 chr9 7743286 7743538 -134527906 - L1MD3 LINE L1 -2 7993 7731 * 1755 145 91 0 chr9 7743547 7743823 -134527621 - AluSx SINE Alu -11 301 1 4419 243 91 52 chr9 7743859 7745837 -134525607 - L1ME2 LINE L1 -830 5316 3273 5930 138 11 18 chr9 7745853 7746752 -134524692 - L1MC1 LINE L1 0 6333 5438 1859 54 0 5 chr9 7746752 7747000 -134524444 - AluY SINE Alu 0 319 73 5930 138 11 18 chr9 7747000 7747054 -134524390 - L1MC1 LINE L1 -895 5438 5385 7055 48 0 9 chr9 7747054 7747910 -134523534 - L1PA5 LINE L1 0 6154 5307 403 285 145 5 chr9 7748011 7748204 -134523240 - L1MC4a LINE L1 -1058 6750 6531 2476 59 0 31 chr9 7748426 7748747 -134522697 - AluY SINE Alu 0 311 1 514 275 8 0 chr9 7748884 7749015 -134522429 - L1MC4a LINE L1 -1902 5906 5775 1066 293 157 5 chr9 7749225 7749666 -134521778 + MLT1L LTR MaLR 86 593 -22 195 42 0 0 chr9 7750169 7750193 -134521251 + (TC)n Simple_repeat Simple_repeat 2 25 0 727 172 19 51 chr9 7750550 7750707 -134520737 + MIR SINE MIR 101 252 -10 229 293 61 0 chr9 7753151 7753233 -134518211 - L3b LINE CR1 -246 1337 1251 204 125 0 0 chr9 7753275 7753307 -134518137 + (TC)n Simple_repeat Simple_repeat 1 32 0 757 235 15 67 chr9 7753320 7753588 -134517856 + L1MC4a LINE L1 5677 5930 -1878 227 304 36 43 chr9 7753638 7753776 -134517668 + HAL1 LINE L1 2357 2493 -14 631 77 0 0 chr9 7754491 7754569 -134516875 + MADE1 DNA Mariner 3 80 0 39640 83 6 7 chr9 7755692 7761848 -134509596 + L1PA6 LINE L1 5 6154 0 37 0 0 0 chr9 7761848 7761885 -134509559 + AT_rich Low_complexity Low_complexity 1 37 0 381 289 72 41 chr9 7761907 7762147 -134509297 + MLT1L LTR MaLR 110 341 -274 2083 145 0 6 chr9 7762147 7762458 -134508986 + AluSx SINE Alu 1 309 -3 381 289 72 41 chr9 7762458 7762609 -134508835 + MLT1L LTR MaLR 341 615 0 184 212 0 0 chr9 7762613 7762646 -134508798 - L2 LINE L2 -97 3216 3184 245 319 55 22 chr9 7763567 7763658 -134507786 + MIR SINE MIR 99 192 -70 204 410 40 29 chr9 7763905 7764078 -134507366 - L2 LINE L2 -16 3256 3082 271 322 144 8 chr9 7764584 7764702 -134506742 - L2 LINE L2 -1 3271 3138 297 68 0 0 chr9 7765919 7765963 -134505481 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 4912 110 36 7 chr9 7766035 7766753 -134504691 + L1PA16 LINE L1 5417 6155 -11 321 125 0 0 chr9 7767823 7767879 -134503565 + (TC)n Simple_repeat Simple_repeat 1 56 0 333 240 165 8 chr9 7768182 7768303 -134503141 - L2 LINE L2 -214 3058 2919 234 255 59 0 chr9 7770365 7770416 -134501028 - MIR3 SINE MIR -52 156 103 200 242 0 32 chr9 7770822 7770884 -134500560 - MIR SINE MIR -6 256 197 814 263 137 26 chr9 7770991 7771379 -134500065 + MLT1J LTR MaLR 7 437 -74 274 208 218 20 chr9 7771460 7771561 -134499883 + MLT1J LTR MaLR 334 454 -57 1367 177 9 79 chr9 7772823 7773139 -134498305 + L1MB5 LINE L1 5881 6174 0 248 274 47 38 chr9 7773154 7773260 -134498184 + L3 LINE CR1 1265 1371 -206 357 267 114 28 chr9 7773276 7773452 -134497992 - MIR SINE MIR -12 250 60 1751 183 26 7 chr9 7773486 7773792 -134497652 - AluJb SINE Alu 0 312 1 180 111 0 0 chr9 7774194 7774221 -134497223 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1927 191 63 26 chr9 7774364 7774746 -134496698 - MSTD LTR MaLR 0 396 1 236 211 53 0 chr9 7775583 7775640 -134495804 - MLT1K LTR MaLR -7 581 522 370 278 35 0 chr9 7776498 7776613 -134494831 + MLT1L LTR MaLR 368 486 -129 649 341 60 30 chr9 7776713 7777366 -134494078 + L2 LINE L2 2628 3308 -5 241 219 37 0 chr9 7777371 7777453 -134493991 + G-rich Low_complexity Low_complexity 3 87 0 402 261 96 102 chr9 7777566 7777900 -134493544 - MLT1K LTR MaLR -247 341 10 1090 181 48 9 chr9 7778093 7778303 -134493141 + L1PB3 LINE L1 5936 6153 -1 361 277 43 116 chr9 7779755 7780084 -134491360 + L2 LINE L2 2966 3270 -2 288 0 0 0 chr9 7780637 7780669 -134490775 + (CA)n Simple_repeat Simple_repeat 2 33 0 2178 111 0 3 chr9 7781220 7781508 -134489936 + AluSx SINE Alu 11 297 -15 408 208 25 67 chr9 7781968 7782088 -134489356 + L1ME LINE L1 97 211 -5859 1053 277 88 71 chr9 7782153 7782607 -134488837 - MLT1G LTR MaLR -135 460 1 277 229 57 0 chr9 7782608 7782713 -134488731 + L1M4 LINE L1 3047 3157 -2989 9320 223 42 11 chr9 7782762 7784119 -134487325 + L1M4 LINE L1 2930 4394 -1752 2070 121 0 13 chr9 7784119 7784417 -134487027 + AluSc SINE Alu 1 294 -15 9320 223 42 11 chr9 7784417 7785450 -134485994 + L1M4 LINE L1 4394 5394 -752 1580 88 0 0 chr9 7785458 7785684 -134485760 + L1P LINE L1 5081 5306 -840 255 317 0 12 chr9 7785784 7785866 -134485578 - MIR SINE MIR -179 83 3 428 204 41 20 chr9 7786043 7786141 -134485303 - MIR3 SINE MIR -15 193 94 387 316 8 0 chr9 7787113 7787246 -134484198 + MIR SINE MIR 58 191 -71 1724 99 4 21 chr9 7787300 7787533 -134483911 - AluSp SINE Alu -11 302 74 200 132 0 26 chr9 7788442 7788480 -134482964 - MIR SINE MIR -109 153 117 511 250 8 0 chr9 7789356 7789488 -134481956 + L1MB7 LINE L1 6040 6172 -12 2521 76 0 0 chr9 7790242 7790546 -134480898 + AluY SINE Alu 1 304 -7 670 167 67 40 chr9 7790963 7791113 -134480331 + MIR SINE MIR 109 262 0 703 263 123 4 chr9 7791934 7792162 -134479282 - MIR SINE MIR 0 262 8 185 323 56 71 chr9 7792424 7792622 -134478822 - MIR SINE MIR -44 218 24 405 0 0 0 chr9 7793612 7793657 -134477787 + (CA)n Simple_repeat Simple_repeat 2 46 0 390 213 155 32 chr9 7795110 7795265 -134476179 - MIR3 SINE MIR -26 182 9 479 227 123 19 chr9 7795708 7795862 -134475582 - MIR SINE MIR -91 171 2 494 160 0 0 chr9 7796766 7796841 -134474603 - MSTD LTR MaLR -321 75 1 3163 154 11 71 chr9 7796845 7797351 -134474093 + MER6A DNA MER2_type 1 461 -404 1779 143 68 4 chr9 7797351 7797631 -134473813 - AluJo SINE Alu -14 298 1 3163 154 11 71 chr9 7797631 7797768 -134473676 + MER6A DNA MER2_type 461 605 0 769 215 70 0 chr9 7797842 7798000 -134473444 + MER45A DNA AcHobo 9 177 -1 589 225 198 22 chr9 7799236 7799549 -134471895 - MLT1J LTR MaLR -23 488 82 201 39 0 0 chr9 7899834 7899860 -134371584 + (CA)n Simple_repeat Simple_repeat 2 27 0 632 209 19 87 chr9 7900199 7900405 -134371039 - MER4C LTR ERV1 -1 464 273 * 1005 180 56 135 chr9 7900390 7900925 -134370519 - MER4A LTR ERV1 -165 432 1 2029 136 172 5 chr9 7901038 7901405 -134370039 + MSTA LTR MaLR 1 428 0 357 318 101 16 chr9 7901564 7901753 -134369691 + MIR SINE MIR 52 256 -6 2098 171 31 6 chr9 7903287 7903643 -134367801 + MLT1A1 LTR MaLR 1 365 0 195 289 19 0 chr9 7904173 7904225 -134367219 - L2 LINE L2 -1 3271 3219 211 254 104 0 chr9 7904236 7904303 -134367141 + MIR SINE MIR 125 198 -64 555 254 89 46 chr9 7905991 7906417 -134365027 + MLT1L LTR MaLR 126 614 -1 283 316 58 26 chr9 7906815 7907011 -134364433 - MIR SINE MIR -3 259 58 281 228 35 0 chr9 7907047 7907161 -134364283 + (TA)n Simple_repeat Simple_repeat 2 119 0 2262 98 3 0 chr9 7907826 7908113 -134363331 + AluSp SINE Alu 1 288 -25 238 224 0 26 chr9 7908134 7908210 -134363234 + L1MC5 LINE L1 7853 7926 -35 978 206 25 25 chr9 7908265 7908542 -134362902 - Charlie2a DNA MER1_type -1850 1012 736 827 214 291 40 chr9 7908543 7908684 -134362760 - Charlie2a DNA MER1_type -2308 474 370 2024 118 27 3 chr9 7908684 7908980 -134362464 + AluSx SINE Alu 1 303 -9 827 214 291 40 chr9 7908980 7909216 -134362228 - Charlie2a DNA MER1_type -2412 370 2 519 328 6 17 chr9 7909764 7909944 -134361500 + MIR3 SINE MIR 20 197 -11 476 281 98 58 chr9 7912043 7912267 -134359177 - MIR SINE MIR -26 236 4 234 302 0 0 chr9 7914209 7914272 -134357172 - MER5A DNA MER1_type -76 113 51 198 329 75 80 chr9 7914356 7914569 -134356875 + MIR SINE MIR 51 262 0 476 338 87 14 chr9 7915009 7915228 -134356216 + MIR SINE MIR 20 254 -8 410 261 113 20 chr9 7915331 7915526 -134355918 - MIR SINE MIR -48 214 2 210 171 0 0 chr9 7916243 7916284 -134355160 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 477 292 52 7 chr9 7916286 7916440 -134355004 - MIR SINE MIR -7 255 95 612 292 82 26 chr9 7917227 7917460 -134353984 + MLT1H1 LTR MaLR 1 246 -309 258 218 64 0 chr9 7917498 7917576 -134353868 + MLT1H1 LTR MaLR 507 554 -1 467 230 164 24 chr9 7917755 7917920 -134353524 + MIR3 SINE MIR 21 208 0 225 266 28 73 chr9 7918217 7918326 -134353118 + MIR SINE MIR 81 184 -78 471 296 123 0 chr9 7918393 7918572 -134352872 - MIR SINE MIR -13 249 49 234 0 0 0 chr9 7918627 7918653 -134352791 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1037 186 11 6 chr9 7918750 7918927 -134352517 - MER5B DNA MER1_type 0 178 1 317 276 43 17 chr9 7919965 7920081 -134351363 + LTR67 LTR ERVL 429 547 -10 2800 174 49 8 chr9 7920456 7920984 -134350460 - MER44D DNA MER2_type 0 605 1 375 312 55 0 chr9 7921474 7921583 -134349861 + MIR SINE MIR 28 142 -120 25 0 0 0 chr9 7921883 7921908 -134349536 + AT_rich Low_complexity Low_complexity 1 25 0 839 284 29 0 chr9 7922047 7922251 -134349193 + MER63A DNA MER1_type 1 210 0 370 227 40 80 chr9 7922314 7922464 -134348980 + L2 LINE L2 3160 3303 -10 2069 138 3 0 chr9 7923212 7923508 -134347936 - AluSx SINE Alu -13 299 3 189 205 0 0 chr9 7924201 7924240 -134347204 + MIR SINE MIR 158 196 -66 506 296 69 57 chr9 7924980 7925227 -134346217 + MIR SINE MIR 1 250 -12 728 218 18 41 chr9 7926602 7926822 -134344622 - L1MA7 LINE L1 -1 6290 6076 1983 161 70 6 chr9 7927312 7927654 -134343790 - MLT1A1 LTR MaLR -1 364 1 2691 26 7 0 chr9 7928722 7929030 -134342414 - AluY SINE Alu -1 310 1 250 239 30 0 chr9 7929095 7929162 -134342282 + (TA)n Simple_repeat Simple_repeat 1 69 0 214 216 27 0 chr9 7930448 7930522 -134340922 + CT-rich Low_complexity Low_complexity 2 77 0 242 283 54 0 chr9 7930901 7930993 -134340451 - MIR SINE MIR -70 192 96 233 342 149 0 chr9 7931567 7931681 -134339763 - MIR3 SINE MIR -63 145 15 972 169 19 5 chr9 7932532 7932739 -134338705 - L1MA7 LINE L1 -2 6289 6080 1124 151 27 28 chr9 7933034 7933252 -134338192 - L1PB1 LINE L1 -13 6153 5945 1433 122 10 0 chr9 7934270 7934475 -134336969 - L1PB1 LINE L1 0 6151 5945 258 308 65 19 chr9 7934495 7934602 -134336842 + MIR SINE MIR 61 172 -90 439 259 109 23 chr9 7934851 7935025 -134336419 - LTR67 LTR ERVL -13 544 356 305 325 19 57 chr9 7935176 7935333 -134336111 - LTR67 LTR ERVL -355 202 52 210 277 96 0 chr9 7935591 7935685 -134335759 - MIR SINE MIR -80 182 80 475 316 124 10 chr9 7935737 7935930 -134335514 + MIR SINE MIR 7 221 -41 232 200 12 129 chr9 7937500 7937554 -134333890 + MIR SINE MIR 105 147 -115 2262 77 7 0 chr9 7937554 7937840 -134333604 - AluSp SINE Alu -25 288 1 232 200 12 129 chr9 7937840 7937870 -134333574 + MIR SINE MIR 147 179 -83 2272 136 33 25 chr9 7937949 7938310 -134333134 + THE1B LTR MaLR 1 364 0 2522 62 0 7 chr9 7941436 7941745 -134329699 + AluY SINE Alu 1 307 -4 235 214 0 0 chr9 7942337 7942379 -134329065 + L2 LINE L2 3228 3269 -3 1073 90 8 0 chr9 7942987 7943121 -134328323 + AluSq/x SINE Alu 1 135 -177 1827 161 3 3 chr9 7943122 7943413 -134328031 + AluSx SINE Alu 1 291 -21 2683 162 54 35 chr9 7943565 7944140 -134327304 + L1MA7 LINE L1 5607 6192 -99 1725 171 0 51 chr9 7946880 7947196 -134324248 - AluJb SINE Alu -12 300 1 1317 282 44 12 chr9 7947818 7948300 -134323144 + Tigger8 DNA MER2_type 157 653 -13 279 259 16 77 chr9 7949019 7949174 -134322270 + L1ME LINE L1 5465 5605 -516 908 243 62 110 chr9 7949514 7949996 -134321448 + HAL1 LINE L1 16 474 -2033 1058 137 12 6 chr9 7949996 7950164 -134321280 + FRAM SINE Alu 1 169 -7 241 215 169 0 chr9 7950165 7950230 -134321214 + HAL1 LINE L1 466 541 -1966 1210 182 9 18 chr9 7950233 7950453 -134320991 + AluJo SINE Alu 73 290 -22 2625 227 116 136 chr9 7950467 7950896 -134320548 + HAL1 LINE L1 530 966 -1541 189 0 0 0 chr9 7950896 7950917 -134320527 + (TA)n Simple_repeat Simple_repeat 2 22 0 2625 227 116 136 chr9 7950917 7951369 -134320075 + HAL1 LINE L1 966 1426 -1081 764 160 82 82 chr9 7951369 7951483 -134319961 - MER58C DNA MER1_type -2212 208 95 483 18 0 0 chr9 7951483 7951539 -134319905 + (TTGG)n Simple_repeat Simple_repeat 4 59 0 764 160 82 82 chr9 7951539 7951606 -134319838 - MER58C DNA MER1_type -2325 95 24 2669 167 22 31 chr9 7951606 7952096 -134319348 + MER66B LTR ERV1 1 486 0 764 160 82 82 chr9 7952096 7952119 -134319325 - MER58C DNA MER1_type -2395 25 3 2625 227 116 136 chr9 7952119 7952955 -134318489 + HAL1 LINE L1 1426 2414 -93 299 243 40 0 chr9 7953419 7953493 -134317951 + LTR67 LTR ERVL 3 79 -478 2483 132 16 65 chr9 7953545 7953991 -134317453 - Tigger2a DNA MER2_type 0 434 11 329 314 0 8 chr9 7954043 7954164 -134317280 + LTR67 LTR ERVL 438 557 0 182 306 26 119 chr9 7955171 7955364 -134316080 - MIR SINE MIR -70 192 18 21 57 0 0 chr9 7955642 7955677 -134315767 + AT_rich Low_complexity Low_complexity 1 35 0 7236 221 82 19 chr9 7955799 7956067 -134315377 - L1M2 LINE L1 -4523 2686 2436 2083 124 3 0 chr9 7956067 7956378 -134315066 - AluSp SINE Alu 0 312 1 7236 221 82 19 chr9 7956378 7958578 -134312866 - L1M2 LINE L1 -4773 2436 1 199 283 67 0 chr9 7958735 7958795 -134312649 + L2 LINE L2 2191 2254 -1060 740 304 35 4 chr9 7959070 7959297 -134312147 + MIR SINE MIR 25 258 -4 304 286 8 40 chr9 7959733 7959859 -134311585 + GA-rich Low_complexity Low_complexity 3 124 0 377 247 62 84 chr9 7960604 7960782 -134310662 + HAL1 LINE L1 22 195 -2312 287 330 42 62 chr9 7961179 7961485 -134309959 + HAL1 LINE L1 706 1005 -1502 265 342 17 17 chr9 7962430 7962550 -134308894 + MIR SINE MIR 23 142 -120 2866 221 100 12 chr9 7964492 7965270 -134306174 - L1ME1 LINE L1 -3 6163 5317 241 235 15 15 chr9 7966033 7966101 -134305343 + MLT1K LTR MaLR 179 246 -342 2064 160 0 0 chr9 7966438 7966744 -134304700 + AluJo SINE Alu 1 306 -6 232 333 8 79 chr9 7966962 7967088 -134304356 - L3 LINE CR1 -3 1574 1458 389 355 33 16 chr9 7968134 7968376 -134303068 - MIR SINE MIR -14 248 3 404 258 116 37 chr9 7969494 7969684 -134301760 + MIR SINE MIR 56 260 -2 2111 221 61 17 chr9 7970578 7971052 -134300392 + MLT1F LTR MaLR 1 495 -47 2060 221 31 48 chr9 7971053 7971574 -134299870 - LTR40a LTR ERVL 0 519 8 262 235 0 0 chr9 7971580 7971631 -134299813 + MLT1F LTR MaLR 492 542 0 351 276 95 0 chr9 7972650 7972766 -134298678 + MIR SINE MIR 124 250 -12 555 163 0 0 chr9 7972771 7972863 -134298581 - AluJ/FRAM SINE Alu 0 312 221 1521 263 50 19 chr9 7973516 7973992 -134297452 + LTR16C LTR ERVL 1 491 0 345 329 96 0 chr9 7974138 7974284 -134297160 - MIR SINE MIR -66 196 37 1016 251 140 40 chr9 7974375 7974946 -134296498 + L2 LINE L2 2698 3308 -5 329 243 162 0 chr9 7975512 7975648 -134295796 - L1ME4a LINE L1 -3 6118 5961 1046 110 6 0 chr9 7975729 7975893 -134295551 + (TTTCC)n Simple_repeat Simple_repeat 2 166 0 1708 169 22 0 chr9 7975893 7976166 -134295278 - AluJb SINE Alu -33 279 1 272 275 11 0 chr9 7976308 7976399 -134295045 - HsTC2 DNA Tc2 -1007 891 800 482 134 0 0 chr9 7976435 7976502 -134294942 + Tigger2 DNA MER2_type 1 67 -2651 * 570 143 0 10 chr9 7976488 7976586 -134294858 + Tigger2 DNA MER2_type 2267 2363 -355 226 103 0 0 chr9 7976583 7976612 -134294832 + Tigger2 DNA MER2_type 2680 2708 -10 * 648 260 87 5 chr9 7976616 7976824 -134294620 - HsTC2 DNA Tc2 -1138 760 536 336 276 33 59 chr9 7976826 7976978 -134294466 - HsTC2 DNA Tc2 -1750 148 1 21 0 0 0 chr9 7977127 7977148 -134294296 + AT_rich Low_complexity Low_complexity 1 21 0 510 271 25 30 chr9 7977895 7978030 -134293414 - L1ME4a LINE L1 -162 5959 5824 2153 132 47 44 chr9 7978030 7978393 -134293051 + THE1B LTR MaLR 1 364 0 510 271 25 30 chr9 7978393 7978456 -134292988 - L1ME4a LINE L1 -297 5824 5762 2451 68 0 0 chr9 7978945 7979239 -134292205 + AluY SINE Alu 1 294 -17 381 197 13 0 chr9 7980048 7980124 -134291320 + MER58 DNA MER1_type 2343 2419 -1 234 258 33 67 chr9 7980932 7981052 -134290392 - L1MC4 LINE L1 -116 7926 7811 295 271 21 21 chr9 7981181 7981277 -134290167 - L1MC4 LINE L1 -368 7674 7579 2531 230 17 35 chr9 7981295 7981930 -134289514 - L1ME1 LINE L1 -4 6162 5539 253 220 68 0 chr9 7981973 7982032 -134289412 - L1ME LINE L1 -6002 68 6 234 307 53 0 chr9 7982105 7982180 -134289264 - MIR3 SINE MIR -14 194 116 346 236 42 0 chr9 7982203 7982275 -134289169 - L2 LINE L2 -4 3268 3194 294 254 0 0 chr9 7983674 7983741 -134287703 + MIR3 SINE MIR 137 203 -5 27 49 0 0 chr9 7984430 7984471 -134286973 + AT_rich Low_complexity Low_complexity 1 41 0 632 255 21 32 chr9 7984660 7984848 -134286596 + MIR SINE MIR 2 187 -75 23 33 0 0 chr9 7987182 7987212 -134284232 + AT_rich Low_complexity Low_complexity 1 30 0 431 193 0 23 chr9 7988157 7988245 -134283199 + MIR SINE MIR 174 259 -3 189 0 0 0 chr9 7988552 7988573 -134282871 + (CA)n Simple_repeat Simple_repeat 1 21 0 216 111 0 0 chr9 7989987 7990023 -134281421 + (CA)n Simple_repeat Simple_repeat 1 36 0 1323 261 68 38 chr9 7990386 7990857 -134280587 + LTR16C LTR ERVL 1 485 -6 203 316 52 44 chr9 7991069 7991126 -134280318 + L2 LINE L2 3171 3226 -87 2622 52 7 0 chr9 7991126 7991435 -134280009 - AluY SINE Alu 0 311 1 203 316 52 44 chr9 7991435 7991513 -134279931 + L2 LINE L2 3226 3307 -6 1629 169 96 37 chr9 7992400 7992754 -134278690 + THE1C LTR MaLR 1 375 0 1030 273 101 21 chr9 7994128 7994505 -134276939 - MLT1I LTR MaLR -2 407 1 2559 65 0 0 chr9 7994547 7994856 -134276588 + AluY SINE Alu 3 311 0 382 294 48 14 chr9 7994990 7995166 -134276278 + MIR SINE MIR 42 221 -41 261 244 142 47 chr9 7995763 7995890 -134275554 + Charlie8 DNA MER1_type 87 225 -2192 259 306 102 23 chr9 7996297 7996455 -134274989 - MIR SINE MIR -63 145 1 198 333 0 26 chr9 7996714 7996792 -134274652 + L2 LINE L2 3197 3272 0 359 297 40 14 chr9 7997628 7997904 -134273540 - L1MDb LINE L1 -5023 1921 1639 7993 170 8 9 chr9 7997929 8000136 -134271308 + L1PA14 LINE L1 3923 6149 -12 24 0 0 0 chr9 8000138 8000162 -134271282 + AT_rich Low_complexity Low_complexity 1 24 0 343 231 27 150 chr9 8000238 8000498 -134270946 - L1MDb LINE L1 -5082 1341 1114 810 314 47 38 chr9 8000814 8001266 -134270178 - L1MDb LINE L1 -5944 479 24 324 290 43 48 chr9 8001269 8001476 -134269968 - L1ME LINE L1 -307 5814 5609 * 424 169 7 115 chr9 8001472 8001620 -134269824 + L1ME3A LINE L1 6017 6148 -22 24 0 0 0 chr9 8001715 8001739 -134269705 + AT_rich Low_complexity Low_complexity 1 24 0 366 331 44 7 chr9 8002995 8003131 -134268313 - MIR3 SINE MIR -23 185 45 1474 194 55 73 chr9 8003195 8003576 -134267868 - MLT1A2 LTR MaLR 0 374 1 5805 129 40 2 chr9 8004361 8005893 -134265551 + L1PA15 LINE L1 4594 6159 -6 2545 74 0 0 chr9 8006333 8006644 -134264800 + AluY SINE Alu 1 311 0 4797 118 43 3 chr9 8006814 8007515 -134263929 - L1PA16 LINE L1 -9 6472 5744 3088 220 126 12 chr9 8007516 8007528 -134263916 - L1PA16 LINE L1 -813 5648 5639 2141 104 27 7 chr9 8007528 8007827 -134263617 - AluSx SINE Alu -7 305 1 3088 220 126 12 chr9 8007827 8008741 -134262703 - L1PA16 LINE L1 -822 5639 4616 * 11503 152 20 20 chr9 8008729 8010056 -134261388 - L1MA3 LINE L1 -2 7722 6397 2542 48 0 10 chr9 8010056 8010368 -134261076 - AluY SINE Alu 0 311 3 11503 152 20 20 chr9 8010368 8012233 -134259211 - L1MA3 LINE L1 -1327 6397 4527 750 129 0 0 chr9 8012249 8012365 -134259079 - L1PA16 LINE L1 -1829 4632 4517 * 4388 129 2 8 chr9 8012363 8013005 -134258439 - L1PA16 LINE L1 -4757 1118 481 1817 167 69 3 chr9 8013009 8013326 -134258118 - L1PA16 LINE L1 -5536 339 2 20213 160 32 24 chr9 8013326 8016948 -134254496 - L1MA3 LINE L1 -3898 3667 16 3327 199 45 8 chr9 8016954 8017663 -134253781 - L1 LINE L1 -1817 4329 3595 * 12312 191 33 20 chr9 8017632 8020805 -134250639 - L1PA15-16 LINE L1 -3368 3481 716 2366 161 97 11 chr9 8020819 8021273 -134250171 - LTR49 LTR ERV1 -102 493 1 3110 77 41 10 chr9 8021598 8022015 -134249429 - L1PA11 LINE L1 -2 6172 5743 320 261 109 0 chr9 8022565 8022657 -134248787 + MIR SINE MIR 156 257 -5 3092 196 56 59 chr9 8023154 8023883 -134247561 - LTR8A LTR ERV1 0 727 1 349 262 10 48 chr9 8025351 8025454 -134245990 + MIR SINE MIR 9 107 -155 1364 315 118 29 chr9 8026106 8026816 -134244628 + HERVL LTR ERVL 2937 3725 -1929 2850 7 0 0 chr9 8026816 8027120 -134244324 + AluYb8 SINE Alu 1 304 -14 1364 315 118 29 chr9 8027120 8027199 -134244245 + HERVL LTR ERVL 3725 3796 -1858 1542 331 43 50 chr9 8027281 8028274 -134243170 + HERVL LTR ERVL 4050 5035 -729 1023 231 51 121 chr9 8028655 8029057 -134242387 + LTR16C LTR ERVL 1 357 -134 2769 117 6 80 chr9 8029057 8029546 -134241898 - MLT2A2 LTR ERVL 0 453 1 1023 231 51 121 chr9 8029546 8029673 -134241771 + LTR16C LTR ERVL 357 491 0 701 240 34 43 chr9 8029832 8030040 -134241404 - MER58C DNA MER1_type 0 215 10 2562 46 3 0 chr9 8031690 8031997 -134239447 + AluY SINE Alu 1 308 -3 180 0 0 0 chr9 8031997 8032017 -134239427 + (TA)n Simple_repeat Simple_repeat 2 21 0 336 355 51 0 chr9 8032055 8032193 -134239251 + L2 LINE L2 2917 3061 -211 1245 216 42 45 chr9 8032193 8032615 -134238829 - MER66A LTR ERV1 0 525 165 389 295 85 123 chr9 8032835 8033177 -134238267 + MER102b DNA MER1_type 13 341 0 2240 110 0 0 chr9 8033361 8033651 -134237793 - AluSx SINE Alu -22 290 1 218 246 18 18 chr9 8033786 8033843 -134237601 + L2 LINE L2 3179 3235 -78 240 35 0 0 chr9 8033890 8033919 -134237525 + (TA)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr9 8033918 8033947 -134237497 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 1166 148 0 48 chr9 8033953 8034182 -134237262 - L1PA16 LINE L1 -9 6157 5940 827 211 54 66 chr9 8034592 8034834 -134236610 + MER8 DNA MER2_type 1 239 0 331 370 126 38 chr9 8035312 8035709 -134235735 - L2 LINE L2 0 3272 2841 334 153 64 38 chr9 8036090 8036199 -134235245 + MER45C DNA AcHobo 82 195 -758 1254 285 76 12 chr9 8036317 8036815 -134234629 + MER45C DNA AcHobo 424 953 0 259 316 0 0 chr9 8037050 8037126 -134234318 + GA-rich Low_complexity Low_complexity 2 77 0 2722 126 7 2 chr9 8038189 8038617 -134232827 - L1PA16 LINE L1 -9 6157 5728 404 297 89 50 chr9 8039152 8039354 -134232090 - MIR SINE MIR -19 243 34 2085 148 0 0 chr9 8039767 8040065 -134231379 + AluSx SINE Alu 3 300 -12 398 249 66 76 chr9 8041119 8041305 -134230139 - MLT1J2 LTR MaLR -6 440 254 241 272 169 7 chr9 8041400 8041536 -134229908 - MLT1J LTR MaLR -346 165 8 348 302 52 0 chr9 8041634 8041750 -134229694 + MIR SINE MIR 141 262 0 28 48 0 0 chr9 8041831 8041873 -134229571 + AT_rich Low_complexity Low_complexity 1 42 0 978 219 25 5 chr9 8042033 8042234 -134229210 - MER58A DNA MER1_type 0 224 20 348 283 87 36 chr9 8042310 8042448 -134228996 - MIR SINE MIR -112 150 6 509 223 0 6 chr9 8044773 8044930 -134226514 + (TA)n Simple_repeat Simple_repeat 1 156 0 259 143 0 0 chr9 8044930 8044972 -134226472 + (TG)n Simple_repeat Simple_repeat 2 43 0 393 248 46 0 chr9 8045036 8045145 -134226299 - MER94 DNA DNA -20 114 1 751 274 139 49 chr9 8046182 8047222 -134224222 + L1MEd LINE L1 599 1831 -745 21 57 0 0 chr9 8047801 8047836 -134223608 + AT_rich Low_complexity Low_complexity 1 35 0 306 344 62 10 chr9 8047938 8048133 -134223311 + L1MEd LINE L1 2033 2237 -4159 510 272 37 28 chr9 8048862 8049079 -134222365 + MLT1J LTR MaLR 293 511 0 434 296 25 49 chr9 8049169 8049331 -134222113 - MIR SINE MIR -73 189 32 892 219 12 0 chr9 8049877 8050046 -134221398 - MER5A DNA MER1_type -2 187 17 199 288 0 34 chr9 8050116 8050175 -134221269 - MIR SINE MIR -90 118 62 189 87 43 22 chr9 8050299 8050345 -134221099 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1194 215 98 0 chr9 8050728 8051035 -134220409 - MER58B DNA MER1_type 0 341 5 415 266 113 83 chr9 8051195 8051567 -134219877 + L1ME LINE L1 5413 5795 -326 196 250 62 16 chr9 8052653 8052717 -134218727 - MIR3 SINE MIR 0 208 142 208 195 0 172 chr9 8052903 8052990 -134218454 - MIR3 SINE MIR -22 186 115 432 321 85 66 chr9 8054810 8055115 -134216329 - L2 LINE L2 -4 3268 2958 2864 96 69 5 chr9 8056223 8056660 -134214784 - MER4C LTR ERV1 0 465 1 214 303 111 0 chr9 8056758 8056857 -134214587 - MIR SINE MIR -78 184 75 284 306 20 61 chr9 8058360 8058507 -134212937 - L2 LINE L2 0 3313 3173 527 154 107 13 chr9 8059406 8059555 -134211889 + MER53 DNA DNA 1 163 -26 228 67 0 0 chr9 8059565 8059595 -134211849 + (TG)n Simple_repeat Simple_repeat 1 30 0 1639 199 3 3 chr9 8059608 8059890 -134211554 - AluJb SINE Alu -30 282 1 244 232 116 11 chr9 8060268 8060363 -134211081 + MIR SINE MIR 81 185 -77 249 235 76 59 chr9 8060788 8060907 -134210537 - LTR26 LTR ERV1 -16 587 467 858 227 10 141 chr9 8060917 8061335 -134210109 - LTR8A LTR ERV1 -328 399 37 1174 120 0 6 chr9 8062025 8062192 -134209252 + AluSg/x SINE Alu 126 291 -21 955 192 34 14 chr9 8062766 8062974 -134208470 - MER20 DNA MER1_type -7 212 1 406 299 32 32 chr9 8064868 8065025 -134206419 - MIR SINE MIR -86 176 20 361 316 54 6 chr9 8065650 8065818 -134205626 + MIR SINE MIR 35 210 -52 306 373 68 43 chr9 8065850 8066172 -134205272 - L2 LINE L2 -8 3264 2935 530 289 59 21 chr9 8067693 8067880 -134203564 + MIR SINE MIR 20 213 -49 318 244 209 0 chr9 8068219 8068334 -134203110 + MIR SINE MIR 60 198 -64 728 277 67 9 chr9 8068353 8068577 -134202867 - MIR SINE MIR -6 256 20 11671 121 19 2 chr9 8068577 8069954 -134201490 + L1PA10 LINE L1 3514 4928 -1240 1873 157 29 0 chr9 8069954 8070235 -134201209 - AluSx SINE Alu -20 292 4 11671 121 19 2 chr9 8070235 8071498 -134199946 + L1PA10 LINE L1 4928 6168 0 676 191 137 12 chr9 8071520 8071541 -134199903 + MER5A DNA MER1_type 1 18 -171 198 71 0 0 chr9 8071541 8071569 -134199875 + (CAG)n Simple_repeat Simple_repeat 2 29 0 676 191 137 12 chr9 8071569 8071715 -134199729 + MER5A DNA MER1_type 18 189 0 404 245 0 0 chr9 8071745 8071843 -134199601 + MER58A DNA MER1_type 42 139 0 337 164 30 0 chr9 8071889 8071956 -134199488 + MER58A DNA MER1_type 152 220 -4 244 268 18 18 chr9 8071979 8072035 -134199409 + L2 LINE L2 3210 3265 -7 1887 168 0 10 chr9 8072752 8073055 -134198389 - AluJb SINE Alu -12 300 1 552 292 13 72 chr9 8073218 8073288 -134198156 - LTR33 LTR ERVL -7 514 441 658 216 94 53 chr9 8073288 8073342 -134198102 - MER45A DNA AcHobo -1403 178 128 1678 189 30 7 chr9 8073342 8073643 -134197801 + AluJb SINE Alu 1 308 -4 658 216 94 53 chr9 8073643 8073759 -134197685 - MER45A DNA AcHobo -1453 128 1 552 292 13 72 chr9 8073759 8073924 -134197520 - LTR33 LTR ERVL -80 441 293 283 237 260 0 chr9 8073961 8074134 -134197310 - LTR33 LTR ERVL -300 221 4 1170 220 41 89 chr9 8074425 8074816 -134196628 + MLT1A2 LTR MaLR 3 374 0 185 176 0 0 chr9 8075007 8075041 -134196403 + MIR SINE MIR 106 139 -69 217 326 88 48 chr9 8076032 8076179 -134195265 + L2 LINE L2 2824 2976 -296 240 245 0 0 chr9 8076345 8076394 -134195050 + L2 LINE L2 3222 3270 -2 487 279 118 49 chr9 8076454 8076820 -134194624 - MLT1K LTR MaLR -11 577 187 1158 252 82 52 chr9 8078103 8078674 -134192770 - HsTC2a DNA Tc2 -129 615 28 349 276 92 23 chr9 8078680 8078854 -134192590 - MIR3 SINE MIR -9 199 14 2111 100 0 33 chr9 8079093 8079394 -134192050 + AluY SINE Alu 1 291 -20 216 0 0 0 chr9 8079426 8079450 -134191994 + (TC)n Simple_repeat Simple_repeat 1 24 0 1914 130 0 43 chr9 8081133 8081432 -134190012 - AluSq SINE Alu -27 286 1 2163 241 35 25 chr9 8081432 8081594 -134189850 + MER99 DNA DNA 16 175 -653 2238 85 3 3 chr9 8081594 8081889 -134189555 + AluSg SINE Alu 1 295 -15 2163 241 35 25 chr9 8081889 8082377 -134189067 + MER99 DNA DNA 175 673 -155 5051 181 67 8 chr9 8082383 8083832 -134187612 - L1 LINE L1 -2660 4905 3361 779 222 18 0 chr9 8083835 8084002 -134187442 + MER99 DNA DNA 659 828 0 258 346 0 20 chr9 8086492 8086593 -134184851 - MIR SINE MIR -78 130 32 325 284 166 24 chr9 8086805 8086974 -134184470 - MIR3 SINE MIR -13 195 3 239 343 24 21 chr9 8087586 8087726 -134183718 - MIR SINE MIR -57 151 12 258 320 109 32 chr9 8088396 8088552 -134182892 + MIR SINE MIR 81 248 -14 379 252 91 42 chr9 8090340 8090483 -134180961 - L2 LINE L2 -5 3308 3159 821 267 33 11 chr9 8090484 8090757 -134180687 - LTR16C LTR ERVL 0 491 213 1376 289 64 24 chr9 8090969 8091598 -134179846 - L2 LINE L2 -167 3146 2124 306 274 0 0 chr9 8091606 8091668 -134179776 + MER2 DNA MER2_type 13 74 -271 233 276 52 0 chr9 8092487 8092545 -134178899 + MIR SINE MIR 116 176 -86 339 271 100 87 chr9 8093193 8093422 -134178022 + MIR SINE MIR 7 238 -24 522 308 50 16 chr9 8095184 8095366 -134176078 + MIR3 SINE MIR 12 199 -9 252 250 62 38 chr9 8097882 8097962 -134173482 - L2 LINE L2 0 3313 3232 547 273 44 0 chr9 8099337 8099492 -134171952 + MIR3 SINE MIR 34 198 -10 252 311 46 53 chr9 8099492 8099643 -134171801 + MIR SINE MIR 63 212 -50 246 303 76 43 chr9 8100902 8101084 -134170360 + MIR SINE MIR 37 221 -41 735 249 48 40 chr9 8101537 8101786 -134169658 - MIR SINE MIR 0 262 12 325 162 40 14 chr9 8101801 8101875 -134169569 - MER69 DNA AcHobo -15 2511 2436 429 318 56 47 chr9 8102390 8102623 -134168821 + MIR SINE MIR 2 236 -26 299 252 229 0 chr9 8103296 8103427 -134168017 + MIR SINE MIR 102 262 0 263 206 15 0 chr9 8103533 8103601 -134167843 + MER103 DNA DNA 87 155 -11 503 319 100 11 chr9 8103975 8104335 -134167109 + MLT1J2 LTR MaLR 59 450 0 2339 72 3 3 chr9 8104389 8104682 -134166762 - AluSg SINE Alu -17 293 1 278 158 88 18 chr9 8105499 8105556 -134165888 + L2 LINE L2 3253 3313 0 219 310 0 14 chr9 8105564 8105635 -134165809 - L2 LINE L2 -528 2786 2717 354 244 37 0 chr9 8106961 8107043 -134164401 + LTR33 LTR ERVL 48 132 -389 * 506 295 70 27 chr9 8107033 8107291 -134164153 + LTR33 LTR ERVL 235 503 -18 295 293 69 0 chr9 8107884 8108000 -134163444 - MIR SINE MIR -48 214 91 561 281 9 18 chr9 8108514 8108726 -134162718 - MLT1H LTR MaLR -202 215 29 511 224 179 34 chr9 8110876 8111055 -134160389 - MER3 DNA MER1_type 0 209 5 2378 236 71 35 chr9 8111609 8112587 -134158857 - L1MC4 LINE L1 -258 7784 6772 357 247 13 0 chr9 8112588 8112665 -134158779 - MLT1G1 LTR MaLR -80 515 438 961 176 150 50 chr9 8112673 8113013 -134158431 - MLT1A2 LTR MaLR 0 374 1 423 311 71 40 chr9 8113083 8115308 -134156136 - L1M4 LINE L1 -1684 4462 2170 1808 163 20 7 chr9 8115316 8115611 -134155833 + AluJb SINE Alu 1 299 -13 631 336 52 40 chr9 8115922 8116327 -134155117 - HAL1b LINE L1 -549 799 390 297 0 0 0 chr9 8116465 8116498 -134154946 + (CA)n Simple_repeat Simple_repeat 2 34 0 2280 122 3 6 chr9 8116639 8116991 -134154453 + L1PA8A LINE L1 5781 6131 0 1449 257 27 38 chr9 8116992 8117443 -134154001 - MLT2B1 LTR ERVL -74 446 1 2113 104 0 14 chr9 8117720 8118000 -134153444 - AluSx SINE Alu -36 276 1 840 242 0 10 chr9 8118048 8118242 -134153202 + MER20 DNA MER1_type 28 219 0 431 283 62 36 chr9 8119270 8119436 -134152008 + MER20B DNA MER1_type 45 214 -5 346 333 70 9 chr9 8119451 8119565 -134151879 - MIR SINE MIR -55 153 33 24 0 0 0 chr9 8119763 8119787 -134151657 + AT_rich Low_complexity Low_complexity 1 24 0 275 273 30 0 chr9 8120460 8120526 -134150918 - L2 LINE L2 -1 3312 3245 215 236 36 18 chr9 8120704 8120759 -134150685 - L2 LINE L2 -68 3245 3190 186 236 18 55 chr9 8120808 8120863 -134150581 + MIR SINE MIR 203 255 -7 6553 148 107 17 chr9 8121077 8126430 -134145014 - L1PA8A LINE L1 -319 6127 130 375 105 53 53 chr9 8126431 8126507 -134144937 + MLT2C2 LTR ERVL 389 464 0 418 274 0 0 chr9 8126540 8126635 -134144809 + MIR SINE MIR 84 178 -84 1131 159 5 10 chr9 8127777 8127984 -134143460 + MER2 DNA MER2_type 1 206 -139 227 79 26 0 chr9 8127990 8128028 -134143416 + (TA)n Simple_repeat Simple_repeat 1 39 0 293 277 0 0 chr9 8128034 8128099 -134143345 + MER2 DNA MER2_type 281 345 0 281 250 69 17 chr9 8128257 8128373 -134143071 - MER103 DNA DNA -44 122 1 621 350 64 0 chr9 8128690 8128910 -134142534 + MIR SINE MIR 19 252 -10 453 287 130 14 chr9 8129065 8129288 -134142156 + L2 LINE L2 2811 3059 -254 349 291 87 10 chr9 8129728 8129846 -134141598 - MIR SINE MIR -85 123 21 432 335 58 15 chr9 8130086 8130304 -134141140 + MIR SINE MIR 2 226 -36 305 316 59 37 chr9 8131335 8131471 -134139973 - L2 LINE L2 0 3272 3134 236 389 47 7 chr9 8132189 8132338 -134139106 - L2 LINE L2 -529 2785 2631 646 275 99 30 chr9 8132367 8132793 -134138651 + LTR16A LTR ERVL 3 450 0 360 289 125 19 chr9 8134311 8134519 -134136925 - MIR SINE MIR -4 258 29 248 246 16 0 chr9 8134759 8134820 -134136624 + (CAT)n Simple_repeat Simple_repeat 1 62 0 182 300 117 58 chr9 8136546 8136973 -134134471 + L2 LINE L2 1965 2416 -898 685 284 24 0 chr9 8137058 8137227 -134134217 - MIR SINE MIR -88 174 2 570 320 40 18 chr9 8137549 8137746 -134133698 - MIR SINE MIR -16 246 42 4483 79 7 2 chr9 8137746 8138351 -134133093 + L1PA8A LINE L1 5522 6129 -2 570 320 40 18 chr9 8138351 8138375 -134133069 - MIR SINE MIR -220 42 20 1001 230 168 10 chr9 8139438 8139747 -134131697 - MLT1A2 LTR MaLR -16 358 1 381 329 82 6 chr9 8139822 8139992 -134131452 - MIR SINE MIR -59 203 21 1026 231 14 5 chr9 8139997 8140218 -134131226 + MER58A DNA MER1_type 2 224 0 219 319 43 74 chr9 8141303 8141466 -134129978 + MIR SINE MIR 11 168 -94 375 311 196 5 chr9 8142016 8142225 -134129219 - MIR SINE MIR -12 250 2 384 295 74 65 chr9 8142617 8142755 -134128689 - L2 LINE L2 0 3313 3178 2309 116 0 7 chr9 8142755 8143065 -134128379 + AluSc SINE Alu 1 308 -1 384 295 74 65 chr9 8143065 8143251 -134128193 - L2 LINE L2 -135 3178 2985 690 288 65 92 chr9 8143785 8144168 -134127276 + L1MEd LINE L1 781 1182 -5064 276 30 0 0 chr9 8144168 8144201 -134127243 + (CA)n Simple_repeat Simple_repeat 2 34 0 690 288 65 92 chr9 8144201 8144399 -134127045 + L1MEd LINE L1 1182 1384 -4862 297 0 0 0 chr9 8145095 8145128 -134126316 + (A)n Simple_repeat Simple_repeat 1 33 0 1977 134 46 11 chr9 8145457 8145823 -134125621 + MLT1B LTR MaLR 9 387 -3 260 304 47 27 chr9 8146015 8146163 -134125281 - L2 LINE L2 -815 2499 2349 231 204 0 0 chr9 8148114 8148168 -134123276 + (CA)n Simple_repeat Simple_repeat 2 55 0 1705 189 78 44 chr9 8148508 8148959 -134122485 + MER31B LTR ERV1 1 466 0 369 280 0 0 chr9 8149632 8149725 -134121719 - MER96 DNA MER1_type? 0 175 83 708 294 74 9 chr9 8150439 8150670 -134120774 - MIR SINE MIR -11 251 6 828 246 33 48 chr9 8150851 8151226 -134120218 - L1MD3 LINE L1 0 8042 7687 226 262 0 19 chr9 8151249 8151352 -134120092 + CT-rich Low_complexity Low_complexity 2 102 0 1824 149 58 22 chr9 8151400 8151762 -134119682 + THE1C LTR MaLR 1 375 0 416 255 21 27 chr9 8153212 8153343 -134118101 + MIR SINE MIR 2 134 -74 276 77 0 0 chr9 8154120 8154159 -134117285 + (TG)n Simple_repeat Simple_repeat 2 40 0 239 349 211 0 chr9 8154223 8154441 -134117003 + L2 LINE L2 2641 2904 -410 800 334 85 42 chr9 8154812 8155751 -134115693 + L2 LINE L2 2304 3294 -19 28 29 0 0 chr9 8156667 8156702 -134114742 + AT_rich Low_complexity Low_complexity 1 35 0 907 142 15 0 chr9 8156856 8156990 -134114454 - AluJo SINE Alu -176 136 1 258 250 12 12 chr9 8158727 8158807 -134112637 + MER112 DNA MER1_type 179 258 -2 14877 94 10 10 chr9 8160367 8163383 -134108061 - L1PA8 LINE L1 0 6172 3159 313 288 142 59 chr9 8163805 8164024 -134107420 - L2 LINE L2 0 3313 3077 360 341 49 9 chr9 8164231 8164454 -134106990 - L2 LINE L2 -799 2515 2284 757 175 6 79 chr9 8164470 8164647 -134106797 - MER58A DNA MER1_type -29 195 32 23 33 0 0 chr9 8164895 8164925 -134106519 + AT_rich Low_complexity Low_complexity 1 30 0 198 336 18 62 chr9 8165613 8165726 -134105718 - MIR SINE MIR -59 149 42 216 302 43 86 chr9 8166063 8166179 -134105265 - L2 LINE L2 -15 3257 3147 255 313 15 61 chr9 8166305 8166436 -134105008 + L2 LINE L2 3183 3307 -6 1871 222 49 22 chr9 8166772 8167262 -134104182 + MER87 LTR ERV1 33 535 -6 1404 225 30 35 chr9 8167550 8167919 -134103525 + MLT1A2 LTR MaLR 6 372 -2 374 236 0 22 chr9 8167904 8167993 -134103451 + MER21B LTR ERV1 1 87 -776 * 238 125 62 21 chr9 8168049 8168097 -134103347 + MER21B LTR ERV1 98 147 -716 2481 161 36 78 chr9 8168317 8168871 -134102573 - LTR26B LTR ERV1 0 531 1 2272 86 0 0 chr9 8168919 8169198 -134102246 - AluY SINE Alu -32 279 1 286 284 84 63 chr9 8169427 8169617 -134101827 + MER117 DNA MER1_type 4 197 0 207 111 0 28 chr9 8169642 8169678 -134101766 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 411 285 43 38 chr9 8170255 8170441 -134101003 - MIR3 SINE MIR -3 205 19 1156 196 30 121 chr9 8170617 8171046 -134100398 - MLT2D LTR ERVL -24 390 1 2106 91 66 0 chr9 8172182 8172469 -134098975 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 8172680 8172701 -134098743 + AT_rich Low_complexity Low_complexity 1 21 0 2871 100 83 21 chr9 8172711 8173191 -134098253 - MER9 LTR ERVK -1 510 1 40 0 0 0 chr9 8173338 8173378 -134098066 + AT_rich Low_complexity Low_complexity 1 40 0 272 307 45 23 chr9 8174496 8174584 -134096860 - MIR SINE MIR -89 119 30 23 0 0 0 chr9 8175207 8175230 -134096214 + AT_rich Low_complexity Low_complexity 1 23 0 222 290 54 54 chr9 8175260 8175353 -134096091 - MIR SINE MIR -97 111 19 252 0 0 0 chr9 8175360 8175388 -134096056 + (TG)n Simple_repeat Simple_repeat 2 29 0 340 336 36 0 chr9 8175475 8175615 -134095829 + MIR SINE MIR 112 256 -6 773 176 22 60 chr9 8175700 8175882 -134095562 - MER5B DNA MER1_type 0 178 4 398 270 0 0 chr9 8176248 8176337 -134095107 - L2 LINE L2 0 3272 3184 976 201 54 0 chr9 8177357 8177561 -134093883 - MER20 DNA MER1_type 0 219 5 324 0 0 0 chr9 8177872 8177908 -134093536 + (CA)n Simple_repeat Simple_repeat 2 37 0 245 294 15 0 chr9 8177973 8178041 -134093403 + MIR SINE MIR 71 139 -123 216 0 0 0 chr9 8178041 8178065 -134093379 + (CAT)n Simple_repeat Simple_repeat 2 25 0 622 275 60 63 chr9 8178113 8178477 -134092967 + L1MB1 LINE L1 413 775 -5528 1626 243 47 56 chr9 8178928 8179012 -134092432 + L1MB1 LINE L1 801 884 -5429 2457 136 0 8 chr9 8179012 8179388 -134092056 + THE1C LTR MaLR 1 373 -2 1626 243 47 56 chr9 8179388 8180224 -134091220 + L1MB1 LINE L1 884 1793 -4520 * 3458 232 27 7 chr9 8180213 8181204 -134090240 - L1 LINE L1 -2369 3777 2767 4980 169 30 13 chr9 8181206 8182915 -134088529 + L1PA16 LINE L1 4105 5833 -333 1059 85 0 0 chr9 8182916 8183045 -134088399 + AluSg SINE Alu 5 133 -177 2369 101 7 0 chr9 8183045 8183351 -134088093 + AluSg SINE Alu 1 308 -2 1580 156 25 54 chr9 8183352 8183705 -134087739 + L1PA16 LINE L1 5815 6157 -9 5763 211 56 11 chr9 8184563 8187059 -134084385 + L1MB1 LINE L1 3798 6404 0 429 279 65 13 chr9 8187938 8188092 -134083352 + L2 LINE L2 34 195 -3119 672 278 17 43 chr9 8188111 8188345 -134083099 + L2 LINE L2 3078 3305 -8 299 290 29 88 chr9 8188528 8188969 -134082475 + MLT1I LTR MaLR 1 409 0 220 304 98 29 chr9 8189254 8189356 -134082088 - L2 LINE L2 -2 3311 3203 512 255 180 12 chr9 8189590 8189751 -134081693 - MIR SINE MIR -59 203 16 465 297 24 0 chr9 8190217 8190382 -134081062 - LTR33 LTR ERVL -4 517 349 2102 220 28 18 chr9 8190412 8190912 -134080532 + MLT1D LTR MaLR 1 505 0 900 267 50 21 chr9 8190912 8191193 -134080251 - LTR33 LTR ERVL -232 289 1 351 356 58 14 chr9 8191641 8191849 -134079595 - L2 LINE L2 -214 3058 2842 189 132 0 0 chr9 8192295 8192333 -134079111 + (CA)n Simple_repeat Simple_repeat 2 39 0 200 294 103 66 chr9 8192817 8192953 -134078491 + MIR3 SINE MIR 8 148 -60 279 318 155 0 chr9 8193017 8193165 -134078279 + MIR SINE MIR 51 221 -41 745 142 0 15 chr9 8195586 8195720 -134075724 - FLAM_C SINE Alu 0 133 2 238 276 20 82 chr9 8196587 8196685 -134074759 + L2 LINE L2 1142 1233 -2081 5636 167 13 15 chr9 8196685 8198560 -134072884 - L1PB1 LINE L1 0 6151 4286 2169 134 0 0 chr9 8198560 8198859 -134072585 - AluSq SINE Alu -14 299 1 5636 167 13 15 chr9 8198859 8199126 -134072318 - L1PB1 LINE L1 -1865 4286 4020 1556 326 65 56 chr9 8199132 8199496 -134071948 + L2 LINE L2 1229 1588 -1726 861 149 0 0 chr9 8199496 8199650 -134071794 + L1MA4 LINE L1 6145 6298 -2 1556 326 65 56 chr9 8199650 8200147 -134071297 + L2 LINE L2 1588 2098 -1216 307 39 77 0 chr9 8200389 8200441 -134071003 - L1P1 LINE L1 -710 5445 5390 6180 53 1 1 chr9 8200441 8201257 -134070187 + L1P LINE L1 3469 4284 -1862 271 103 0 0 chr9 8201275 8201314 -134070130 - MLT2D LTR ERVL -48 366 328 216 0 0 0 chr9 8201315 8201339 -134070105 + (CA)n Simple_repeat Simple_repeat 1 24 0 280 135 19 0 chr9 8201345 8201397 -134070047 + MLT2B1 LTR ERVL 468 520 0 227 303 73 28 chr9 8202430 8202539 -134068905 - L2 LINE L2 -220 3052 2939 325 325 56 51 chr9 8202973 8203348 -134068096 + HAL1 LINE L1 4 380 -2127 339 310 92 28 chr9 8203413 8203555 -134067889 + HAL1 LINE L1 480 630 -1877 2297 89 0 7 chr9 8203796 8204088 -134067356 - AluSg SINE Alu -20 290 1 207 221 13 39 chr9 8204152 8204229 -134067215 + A-rich Low_complexity Low_complexity 5 79 0 2241 152 12 14 chr9 8204853 8205273 -134066171 + L1MB3 LINE L1 5757 6175 -8 39 60 0 0 chr9 8205432 8205499 -134065945 + AT_rich Low_complexity Low_complexity 1 67 0 1929 147 17 3 chr9 8205499 8205798 -134065646 + AluSx SINE Alu 1 303 -9 411 285 57 85 chr9 8206991 8207237 -134064207 - MIR3 SINE MIR -18 244 6 1830 160 0 14 chr9 8208483 8208777 -134062667 + AluJb SINE Alu 1 290 -22 857 284 96 11 chr9 8209095 8209458 -134061986 + MLT1I LTR MaLR 1 394 -15 338 288 25 25 chr9 8210932 8211050 -134060394 + MER5A DNA MER1_type 35 152 -37 288 222 28 0 chr9 8211279 8211351 -134060093 + MLT1L LTR MaLR 5 78 -537 242 244 155 37 chr9 8211421 8211598 -134059846 + MLT1J2 LTR MaLR 72 315 -196 313 315 89 98 chr9 8212481 8212808 -134058636 + L2 LINE L2 2930 3253 -19 2774 10 0 0 chr9 8212814 8213117 -134058327 + AluYb8 SINE Alu 16 318 0 23 0 0 0 chr9 8213117 8213140 -134058304 + AT_rich Low_complexity Low_complexity 1 23 0 255 289 22 11 chr9 8213178 8213268 -134058176 - MER103 DNA DNA -75 91 1 395 349 12 41 chr9 8213365 8213466 -134057978 - MIR3 SINE MIR -21 187 92 1732 251 40 41 chr9 8213466 8214021 -134057423 - MLT2B3 LTR ERVL 0 554 1 395 349 12 41 chr9 8214021 8214091 -134057353 - MIR3 SINE MIR -116 92 21 1304 20 0 0 chr9 8214624 8214776 -134056668 + L1PA2 LINE L1 6004 6155 0 1401 137 30 5 chr9 8214786 8215076 -134056368 - MLT2D LTR ERVL -65 349 3 333 280 59 59 chr9 8215225 8215343 -134056101 + MER5B DNA MER1_type 61 178 0 275 281 41 89 chr9 8216289 8216435 -134055009 - MIR3 SINE MIR -66 142 4 * 391 365 97 24 chr9 8216435 8216695 -134054749 + L2 LINE L2 2267 2547 -767 1928 174 10 0 chr9 8217622 8217927 -134053517 - AluJb SINE Alu 0 312 5 228 200 0 20 chr9 8218144 8218194 -134053250 + L2 LINE L2 3219 3267 -5 254 309 9 18 chr9 8218630 8218740 -134052704 + GA-rich Low_complexity Low_complexity 4 112 0 625 274 46 20 chr9 8219726 8219923 -134051521 - MIR SINE MIR 0 262 61 2083 179 3 6 chr9 8219926 8220289 -134051155 + MLT1A1 LTR MaLR 1 362 -3 242 254 32 16 chr9 8220596 8220659 -134050785 + L2 LINE L2 3249 3312 -1 208 353 60 24 chr9 8220739 8220906 -134050538 - L2 LINE L2 -635 2679 2507 195 424 47 0 chr9 8221056 8221141 -134050303 + L2 LINE L2 3121 3209 -63 320 333 42 0 chr9 8222492 8222612 -134048832 + MIR SINE MIR 55 179 -83 304 247 37 12 chr9 8223044 8223125 -134048319 + L2 LINE L2 3185 3267 -5 240 35 0 0 chr9 8223126 8223155 -134048289 + (T)n Simple_repeat Simple_repeat 1 29 0 2530 59 3 3 chr9 8223394 8223700 -134047744 - AluSc SINE Alu 0 309 4 703 57 0 0 chr9 8224047 8224135 -134047309 - AluY SINE Alu -222 88 1 642 305 59 29 chr9 8224804 8225246 -134046198 + L1MEc LINE L1 69 523 -5873 369 0 0 0 chr9 8225258 8225299 -134046145 + (TG)n Simple_repeat Simple_repeat 1 41 0 183 80 0 0 chr9 8225299 8225324 -134046120 + (GA)n Simple_repeat Simple_repeat 2 26 0 374 321 9 0 chr9 8226481 8226587 -134044857 + L2 LINE L2 3188 3294 -19 953 252 20 56 chr9 8226708 8226769 -134044675 - MLT2F LTR ERVL 0 663 601 287 85 21 0 chr9 8226769 8226816 -134044628 + (TG)n Simple_repeat Simple_repeat 2 49 0 953 252 20 56 chr9 8226816 8227060 -134044384 - MLT2F LTR ERVL -62 601 369 1812 141 3 40 chr9 8227143 8227440 -134044004 + AluSq SINE Alu 1 286 -27 425 228 6 64 chr9 8229975 8230100 -134041344 - L1MA10 LINE L1 -2 6332 6218 1764 189 5 39 chr9 8230100 8230482 -134040962 - MLT1A2 LTR MaLR -2 372 4 425 228 6 64 chr9 8230482 8230527 -134040917 - L1MA10 LINE L1 -116 6218 6172 1946 144 31 7 chr9 8230533 8230824 -134040620 - AluSx SINE Alu -14 298 1 1643 207 58 24 chr9 8230836 8231252 -134040192 - L1ME1 LINE L1 -246 5920 5491 4871 234 59 26 chr9 8231261 8232343 -134039101 - L1ME1 LINE L1 -1031 5115 3950 1990 195 29 0 chr9 8232343 8232722 -134038722 - MLT1B LTR MaLR 0 390 1 4871 234 59 26 chr9 8232722 8233392 -134038052 - L1ME1 LINE L1 -2196 3950 3304 5205 260 32 31 chr9 8233578 8235660 -134035784 + L1PA16 LINE L1 1473 3556 -2590 326 100 0 0 chr9 8235660 8235710 -134035734 - MLT2A2 LTR ERVL 0 453 404 374 127 14 0 chr9 8235712 8235783 -134035661 + (TA)n Simple_repeat Simple_repeat 1 72 0 313 187 33 44 chr9 8235785 8235876 -134035568 - L1MC4 LINE L1 -1339 6703 6614 3007 85 15 0 chr9 8235890 8236301 -134035143 - MLT2A2 LTR ERVL -35 418 2 6803 193 31 7 chr9 8236303 8236430 -134035014 + L1PA16 LINE L1 3553 3675 -2491 213 65 0 0 chr9 8236430 8236461 -134034983 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6803 193 31 7 chr9 8236461 8238327 -134033117 + L1PA16 LINE L1 3675 5624 -542 2041 141 7 0 chr9 8238327 8238624 -134032820 + AluSx SINE Alu 1 299 -13 6803 193 31 7 chr9 8238624 8239180 -134032264 + L1PA16 LINE L1 5624 6165 -1 856 222 63 12 chr9 8239398 8239838 -134031606 + MLT1D LTR MaLR 7 505 0 202 349 0 0 chr9 8241312 8241375 -134030069 + L2 LINE L2 3210 3272 0 216 0 0 0 chr9 8242944 8242968 -134028476 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr9 8243503 8243538 -134027906 + AT_rich Low_complexity Low_complexity 1 35 0 1650 140 118 4 chr9 8243541 8243820 -134027624 + AluSx SINE Alu 1 311 -1 335 349 11 48 chr9 8244149 8244338 -134027106 - MER5A DNA MER1_type -6 183 2 302 206 29 0 chr9 8244489 8244557 -134026887 - Charlie8 DNA MER1_type -1000 1417 1348 227 313 82 41 chr9 8245044 8245191 -134026253 + MIR SINE MIR 96 248 -14 396 0 0 0 chr9 8245555 8245599 -134025845 + (CA)n Simple_repeat Simple_repeat 2 45 0 487 242 8 8 chr9 8246322 8246442 -134025002 + MLT1J1 LTR MaLR 1 120 -326 439 237 96 20 chr9 8246517 8246715 -134024729 + MLT1J1 LTR MaLR 234 446 0 1106 216 82 40 chr9 8246741 8247100 -134024344 - L1M4 LINE L1 -1271 4875 4492 219 36 0 0 chr9 8247100 8247128 -134024316 + (TG)n Simple_repeat Simple_repeat 2 29 0 1106 216 82 40 chr9 8247128 8247218 -134024226 - L1M4 LINE L1 -1654 4492 4407 4083 276 69 10 chr9 8247223 8249107 -134022337 - L1M4 LINE L1 -1880 4266 2271 28925 104 13 26 chr9 8249113 8255216 -134016228 - L1PA7 LINE L1 -1 6468 371 455 279 52 73 chr9 8255198 8255396 -134016048 - L1ME LINE L1 -5608 462 274 * 1960 160 0 0 chr9 8255396 8255702 -134015742 - AluSx SINE Alu -6 306 1 455 279 52 73 chr9 8255702 8255872 -134015572 - L1ME LINE L1 -5796 274 102 539 289 96 56 chr9 8255878 8256328 -134015116 - L1ME LINE L1 -5582 488 21 303 304 188 0 chr9 8256368 8256480 -134014964 - MIR3 SINE MIR -9 199 67 1775 190 16 19 chr9 8257124 8257425 -134014019 + MLT1A1 LTR MaLR 3 304 -61 574 88 0 0 chr9 8257425 8257505 -134013939 - MADE1 DNA Mariner 0 80 1 1775 190 16 19 chr9 8257505 8257567 -134013877 + MLT1A1 LTR MaLR 304 365 0 199 299 104 0 chr9 8258505 8258572 -134012872 + L2 LINE L2 3160 3233 -39 25 0 0 0 chr9 8259206 8259231 -134012213 + AT_rich Low_complexity Low_complexity 1 25 0 270 122 0 0 chr9 8260282 8260323 -134011121 - ERVL LTR ERVL -467 5297 5257 396 0 0 0 chr9 8260355 8260399 -134011045 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 210 250 0 0 chr9 8260407 8260451 -134010993 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1112 272 91 7 chr9 8260492 8260911 -134010533 - MLT2B2 LTR ERVL -61 454 1 4517 125 62 15 chr9 8260930 8261118 -134010326 + MER4E LTR ERV1 1 179 -600 2202 91 14 7 chr9 8261118 8261405 -134010039 + AluSc SINE Alu 1 289 -20 4517 125 62 15 chr9 8261405 8261960 -134009484 + MER4E LTR ERV1 179 779 0 3591 173 21 6 chr9 8261960 8262658 -134008786 - MER50 LTR ERV1 -25 709 1 1891 278 66 12 chr9 8262660 8263053 -134008391 - ERVL LTR ERVL -510 5254 4811 3603 142 23 5 chr9 8263053 8263652 -134007792 - MER4B LTR ERV1 0 610 1 1891 278 66 12 chr9 8263652 8263906 -134007538 - ERVL LTR ERVL -953 4811 4572 1869 233 93 47 chr9 8263959 8264603 -134006841 - ERVL LTR ERVL -1278 4486 3813 182 33 67 0 chr9 8264887 8264917 -134006527 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1924 163 56 28 chr9 8265212 8265679 -134005765 + MLT2A2 LTR ERVL 1 483 -71 2284 114 0 0 chr9 8265679 8265987 -134005457 - AluSq SINE Alu -5 308 1 1924 163 56 28 chr9 8265987 8266062 -134005382 + MLT2A2 LTR ERVL 483 554 0 1454 264 79 39 chr9 8266077 8266829 -134004615 - ERVL LTR ERVL -2585 2900 2104 1134 302 51 20 chr9 8267016 8267407 -134004037 - MLT2E LTR ERVL -59 569 167 809 175 0 0 chr9 8268106 8268232 -134003212 - FLAM_A SINE Alu -7 126 1 180 321 19 0 chr9 8269078 8269131 -134002313 + L2 LINE L2 3255 3308 -5 547 313 35 31 chr9 8269281 8269508 -134001936 + MIR SINE MIR 8 235 -27 182 289 0 0 chr9 8269478 8269523 -134001921 + L2 LINE L2 3251 3295 -18 * 2080 198 75 13 chr9 8269554 8270019 -134001425 + MLT1D LTR MaLR 12 505 0 2367 317 112 59 chr9 8270635 8271260 -134000184 - L2 LINE L2 0 3313 2723 2131 75 11 4 chr9 8271260 8271526 -133999918 - AluSp SINE Alu -7 306 39 2367 317 112 59 chr9 8271526 8273535 -133997909 - L2 LINE L2 -590 2723 541 239 267 22 0 chr9 8273558 8273648 -133997796 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 333 292 23 46 chr9 8275075 8275205 -133996239 - L2 LINE L2 0 3313 3187 342 0 0 0 chr9 8275686 8275724 -133995720 + (CA)n Simple_repeat Simple_repeat 2 39 0 1984 163 14 0 chr9 8277357 8277712 -133993732 + MER46B DNA MER2_type -1 233 -3 291 303 138 9 chr9 8277716 8277825 -133993619 - MIR SINE MIR -130 132 10 484 305 17 40 chr9 8277867 8278044 -133993400 - MER5B DNA MER1_type -3 175 3 967 321 111 38 chr9 8278094 8278136 -133993308 - L2 LINE L2 -5 3308 3271 1715 155 197 11 chr9 8278136 8278497 -133992947 + MSTA LTR MaLR 1 428 0 9583 118 35 39 chr9 8278499 8280082 -133991362 + MSTA-int LTR MaLR 3 1580 0 1363 176 92 42 chr9 8280082 8280439 -133991005 + THE1C LTR MaLR 1 375 0 967 321 111 38 chr9 8280439 8280841 -133990603 - L2 LINE L2 -41 3272 2827 5857 147 11 31 chr9 8282147 8282945 -133988499 - L1MA3 LINE L1 0 7724 6912 2133 117 3 13 chr9 8282945 8283244 -133988200 - AluSq SINE Alu -8 305 10 5857 147 11 31 chr9 8283244 8284536 -133986908 - L1MA3 LINE L1 -812 6912 5677 19314 167 39 12 chr9 8284544 8286204 -133985240 - L1MA3 LINE L1 -2748 4817 3202 2265 104 0 13 chr9 8286204 8286511 -133984933 + AluSg SINE Alu 1 303 -7 19314 167 39 12 chr9 8286511 8287330 -133984114 - L1MA3 LINE L1 -4363 3202 2406 2397 84 0 10 chr9 8287330 8287640 -133983804 - AluY SINE Alu -4 307 1 19314 167 39 12 chr9 8287640 8289838 -133981606 - L1MA3 LINE L1 -5159 2406 14 369 0 0 0 chr9 8290070 8290111 -133981333 + (GA)n Simple_repeat Simple_repeat 2 42 0 199 318 30 15 chr9 8290305 8290371 -133981073 - L3b LINE CR1 0 1583 1517 2098 138 33 28 chr9 8290391 8290753 -133980691 - THE1B LTR MaLR 0 364 1 384 360 14 7 chr9 8290753 8290892 -133980552 - MIR3 SINE MIR -25 183 44 243 295 84 0 chr9 8292022 8292117 -133979327 + MIR SINE MIR 121 223 -39 242 294 71 0 chr9 8292151 8292236 -133979208 + MIR SINE MIR 121 211 -51 303 264 45 15 chr9 8292311 8292512 -133978932 + MER113 DNA MER1_type? 19 225 -296 480 229 238 0 chr9 8292583 8292705 -133978739 + MER5A DNA MER1_type 9 159 -30 350 245 115 43 chr9 8293891 8294030 -133977414 - MIR3 SINE MIR 0 208 60 1124 265 54 52 chr9 8295800 8296245 -133975199 - MLT1J1 LTR MaLR 0 446 1 340 296 12 0 chr9 8296374 8296455 -133974989 - L2 LINE L2 0 3272 3191 180 0 0 0 chr9 8296780 8296800 -133974644 + (CAA)n Simple_repeat Simple_repeat 2 21 0 293 298 107 16 chr9 8297020 8297141 -133974303 + MIR SINE MIR 17 148 -114 1363 213 24 14 chr9 8297984 8298275 -133973169 - MLT1A1 LTR MaLR -71 294 1 378 237 89 106 chr9 8298671 8298907 -133972537 - MLT1L LTR MaLR -221 394 163 504 196 0 14 chr9 8298997 8299135 -133972309 - LTR37A LTR ERV1 0 426 291 34800 90 18 11 chr9 8299173 8305283 -133966161 + L1PA6 LINE L1 11 6154 0 21 0 0 0 chr9 8305283 8305304 -133966140 + AT_rich Low_complexity Low_complexity 1 21 0 1978 118 38 3 chr9 8305343 8305631 -133965813 + AluSx SINE Alu 1 298 -14 634 221 12 91 chr9 8305640 8305894 -133965550 - LTR37A LTR ERV1 -174 252 19 827 217 27 0 chr9 8306938 8307122 -133964322 - MER5A DNA MER1_type 0 189 1 191 231 183 10 chr9 8308698 8308802 -133962642 - MIR SINE MIR 0 262 141 5923 88 11 16 chr9 8308869 8309767 -133961677 - L1PA12 LINE L1 0 6168 5275 1191 190 86 30 chr9 8309857 8310267 -133961177 + MLT1D LTR MaLR 1 483 -22 242 243 139 56 chr9 8310965 8311109 -133960335 - MIR SINE MIR -26 236 81 572 295 100 33 chr9 8312075 8312404 -133959040 + LTR33 LTR ERVL 167 517 -4 212 167 0 0 chr9 8313835 8313877 -133957567 + A-rich Low_complexity Low_complexity 1 42 0 1047 291 42 9 chr9 8315348 8315681 -133955763 - MLT1I LTR MaLR -3 406 63 222 320 120 10 chr9 8316820 8316920 -133954524 - L2 LINE L2 0 3313 3203 242 217 0 0 chr9 8317642 8317688 -133953756 - MIR SINE MIR -110 152 107 1101 211 52 83 chr9 8318044 8318489 -133952955 + MLT1C LTR MaLR 37 467 0 217 87 22 22 chr9 8318518 8318564 -133952880 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1822 150 89 29 chr9 8318643 8319023 -133952421 + MER57A LTR ERV1 1 403 0 3062 168 3 43 chr9 8319056 8319585 -133951859 + MLT2B3 LTR ERVL 1 507 -47 1826 171 33 0 chr9 8319585 8319918 -133951526 + MER2 DNA MER2_type 1 344 0 3062 168 3 43 chr9 8319918 8319965 -133951479 + MLT2B3 LTR ERVL 507 554 0 293 216 0 0 chr9 8320116 8320167 -133951277 - MLT2B3 LTR ERVL -175 379 329 430 292 192 9 chr9 8320559 8320778 -133950666 - MIR SINE MIR 0 262 4 200 354 0 97 chr9 8320926 8321039 -133950405 + MIR SINE MIR 19 120 -88 12173 129 27 13 chr9 8322641 8323582 -133947862 - Tigger1 DNA MER2_type 0 2418 1491 2259 115 0 0 chr9 8323582 8323878 -133947566 - AluSg SINE Alu -14 296 1 12173 129 27 13 chr9 8323878 8325228 -133946216 - Tigger1 DNA MER2_type -927 1491 1 379 311 7 40 chr9 8325390 8325538 -133945906 - L2 LINE L2 -4 3309 3167 448 293 66 52 chr9 8325738 8325950 -133945494 - MLT1K LTR MaLR -185 403 189 373 215 45 0 chr9 8326017 8326106 -133945338 - FRAM SINE Alu -72 94 11 229 262 7 117 chr9 8326415 8326560 -133944884 - MIR SINE MIR -27 235 107 196 265 61 92 chr9 8327278 8327376 -133944068 - MIR SINE MIR -48 214 120 914 210 88 46 chr9 8327438 8327767 -133943677 - MER2 DNA MER2_type -1 343 1 275 280 30 10 chr9 8328442 8328542 -133942902 + MLT1J2 LTR MaLR 7 108 -342 403 300 73 0 chr9 8328574 8328684 -133942760 + MLT1J2 LTR MaLR 188 305 -145 223 344 211 0 chr9 8328803 8328893 -133942551 + L2 LINE L2 3142 3250 -22 469 264 76 108 chr9 8329085 8329335 -133942109 - L3 LINE CR1 -933 644 403 314 372 30 12 chr9 8329345 8329509 -133941935 - L3 LINE CR1 -1376 201 35 1555 182 8 54 chr9 8329704 8329838 -133941606 - L1MB5 LINE L1 -2 6172 6033 1757 182 7 3 chr9 8329838 8330134 -133941310 + AluJb SINE Alu 1 297 -15 1555 182 8 54 chr9 8330134 8330331 -133941113 - L1MB5 LINE L1 -141 6033 5857 3460 111 8 2 chr9 8330331 8330838 -133940606 - MER75 DNA T2_type 0 514 5 1555 182 8 54 chr9 8330838 8330874 -133940570 - L1MB5 LINE L1 -317 5857 5821 1401 210 16 11 chr9 8330886 8331311 -133940133 - L1MA8 LINE L1 0 6291 5469 210 189 0 19 chr9 8331313 8331366 -133940078 + T-rich Low_complexity Low_complexity 5 56 0 5954 213 44 22 chr9 8331376 8331431 -133940013 - L1MB5 LINE L1 -697 5477 5425 1491 173 0 0 chr9 8331431 8331662 -133939782 - AluJb SINE Alu -6 306 76 5954 213 44 22 chr9 8331662 8333380 -133938064 - L1MB5 LINE L1 -749 5425 3657 180 276 143 29 chr9 8333703 8333808 -133937636 + L2 LINE L2 3197 3313 0 * 981 271 12 0 chr9 8333805 8334052 -133937392 - MIR SINE MIR 0 262 13 186 267 17 50 chr9 8334723 8334783 -133936661 + L2 LINE L2 2590 2647 -667 464 229 28 28 chr9 8335073 8335217 -133936227 + L1MC4a LINE L1 5826 5969 -1839 358 298 0 11 chr9 8335855 8335949 -133935495 - L2 LINE L2 0 3272 3180 1364 217 26 29 chr9 8336122 8336435 -133935009 - MLT1A1 LTR MaLR -53 312 1 1900 237 60 5 chr9 8336442 8336860 -133934584 - MLT1A1-int LTR MaLR -1 1734 1294 5584 169 30 22 chr9 8337339 8338057 -133933387 + L1PA16 LINE L1 4412 5123 -1043 1841 180 3 0 chr9 8338057 8338368 -133933076 - AluJb SINE Alu 0 312 1 5584 169 30 22 chr9 8338368 8339387 -133932057 + L1PA16 LINE L1 5123 6156 -10 492 304 42 6 chr9 8339483 8339651 -133931793 - MER5B DNA MER1_type -4 174 1 204 413 7 21 chr9 8339850 8339993 -133931451 - MIR SINE MIR -116 146 6 732 256 55 29 chr9 8340141 8340379 -133931065 + MLT1A2 LTR MaLR 131 374 0 261 0 0 0 chr9 8340458 8340487 -133930957 + (A)n Simple_repeat Simple_repeat 1 29 0 477 28 9 255 chr9 8341132 8341238 -133930206 - MADE1 DNA Mariner 0 80 1 485 292 92 33 chr9 8342565 8342805 -133928639 + MIR SINE MIR 9 262 0 208 333 14 0 chr9 8343462 8343531 -133927913 - MIR SINE MIR -113 149 80 286 272 25 0 chr9 8344670 8344751 -133926693 + L2 LINE L2 2998 3080 -192 228 324 109 39 chr9 8344955 8345185 -133926259 + L2 LINE L2 2772 3057 -215 1973 138 41 29 chr9 8346015 8346355 -133925089 + MER2 DNA MER2_type 1 344 0 219 259 55 28 chr9 8346497 8346595 -133924849 + L2 LINE L2 2875 2983 -330 1154 259 95 18 chr9 8346633 8347023 -133924421 - LTR16A LTR ERVL -13 437 18 441 253 140 43 chr9 8347503 8347874 -133923570 - L1ME4a LINE L1 -1 6120 5714 430 313 40 45 chr9 8348039 8348215 -133923229 + MIR3 SINE MIR 33 207 -1 410 290 15 8 chr9 8348848 8348979 -133922465 - MIR SINE MIR -10 252 121 6080 161 46 18 chr9 8349388 8349812 -133921632 + Tigger1 DNA MER2_type 3 413 -2005 2188 96 0 0 chr9 8349812 8350084 -133921360 + AluSg SINE Alu 2 273 -37 222 37 0 0 chr9 8350088 8350115 -133921329 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6080 161 46 18 chr9 8350115 8350769 -133920675 + Tigger1 DNA MER2_type 415 1117 -1301 2541 127 117 5 chr9 8350775 8351193 -133920251 + MER4C LTR ERV1 1 465 0 446 115 0 0 chr9 8351194 8351255 -133920189 + Tigger1 DNA MER2_type 1120 1180 -1238 7753 136 14 19 chr9 8351425 8352042 -133919402 + Tigger1 DNA MER2_type 1187 1795 -623 2191 134 0 0 chr9 8352042 8352347 -133919097 + AluSg SINE Alu 1 305 -5 7753 136 14 19 chr9 8352347 8352968 -133918476 + Tigger1 DNA MER2_type 1795 2418 0 239 257 149 0 chr9 8353371 8353445 -133917999 + L2 LINE L2 3203 3287 -26 7516 49 1 0 chr9 8353779 8355224 -133916220 - L1PA5 LINE L1 0 6154 4700 245 316 70 18 chr9 8355527 8355641 -133915803 - MIR SINE MIR -44 218 99 305 277 79 2 chr9 8356338 8356469 -133914975 + MIR SINE MIR 18 157 -92 639 301 128 38 chr9 8357225 8358069 -133913375 - L2 LINE L2 0 3313 2380 256 260 128 108 chr9 8358200 8358450 -133912994 + MIR SINE MIR 8 262 0 189 295 67 95 chr9 8358566 8358671 -133912773 + MIR SINE MIR 45 146 -62 211 263 147 32 chr9 8358827 8358922 -133912522 - MIR SINE MIR -71 191 86 1345 155 116 5 chr9 8359191 8359487 -133911957 - MER33 DNA MER1_type -4 320 1 195 100 0 0 chr9 8359786 8359816 -133911628 + (TA)n Simple_repeat Simple_repeat 2 31 0 333 270 174 0 chr9 8360760 8360875 -133910569 + MIR SINE MIR 60 194 -68 479 313 44 22 chr9 8362137 8362319 -133909125 + MER5A DNA MER1_type 1 186 -3 268 214 2 2 chr9 8363256 8363321 -133908123 - MLT1L LTR MaLR -137 465 310 219 289 0 0 chr9 8363674 8363719 -133907725 + polypurine Low_complexity Low_complexity 3 47 0 2269 97 0 17 chr9 8364957 8365257 -133906187 + AluY SINE Alu 1 295 -16 318 259 47 0 chr9 8366614 8366699 -133904745 - MIR3 SINE MIR -8 200 112 2044 299 56 19 chr9 8366709 8367691 -133903753 - L2 LINE L2 -1 3312 2298 2329 112 0 0 chr9 8368575 8368880 -133902564 - AluSx SINE Alu -7 305 1 211 294 22 66 chr9 8368974 8369110 -133902334 - MIR SINE MIR -42 220 91 237 263 158 21 chr9 8369692 8369787 -133901657 - MIR SINE MIR -69 193 86 244 207 64 129 chr9 8370034 8370174 -133901270 + MIR SINE MIR 66 196 -66 594 101 13 0 chr9 8370325 8370404 -133901040 - MADE1 DNA Mariner 0 80 1 262 315 130 55 chr9 8370970 8371069 -133900375 + L2 LINE L2 3116 3231 -41 1743 188 94 31 chr9 8371069 8371420 -133900024 - MER93b LTR ERV1 0 373 1 262 315 130 55 chr9 8371420 8371466 -133899978 + L2 LINE L2 3231 3272 0 26 0 0 0 chr9 8371697 8371723 -133899721 + AT_rich Low_complexity Low_complexity 1 26 0 183 299 94 39 chr9 8371941 8372068 -133899376 - MIR SINE MIR -106 156 23 22 0 0 0 chr9 8372488 8372510 -133898934 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 8373201 8373222 -133898222 + AT_rich Low_complexity Low_complexity 1 21 0 280 282 141 43 chr9 8373244 8373407 -133898037 - MIR SINE MIR -64 198 20 271 297 59 20 chr9 8373709 8373810 -133897634 + MIR SINE MIR 110 214 -48 26 88 0 0 chr9 8374262 8374330 -133897114 + AT_rich Low_complexity Low_complexity 1 68 0 217 364 64 16 chr9 8374491 8374648 -133896796 - MIR SINE MIR -39 223 55 231 353 49 8 chr9 8375309 8375431 -133896013 - L3 LINE CR1 -95 1482 1356 2451 158 61 7 chr9 8375496 8375908 -133895536 - Tigger2a DNA MER2_type 0 434 1 180 0 0 0 chr9 8377229 8377249 -133894195 + (T)n Simple_repeat Simple_repeat 1 20 0 1737 204 115 87 chr9 8377495 8378102 -133893342 + MLT1E3 LTR MaLR 1 624 0 326 283 242 0 chr9 8378353 8378473 -133892971 - MIR SINE MIR -25 237 89 722 328 80 48 chr9 8378766 8379770 -133891674 + L2 LINE L2 2233 3272 0 717 195 32 32 chr9 8379837 8379991 -133891453 + MER5A DNA MER1_type 1 154 -35 480 369 5 5 chr9 8380070 8380257 -133891187 + MIR3 SINE MIR 20 206 -2 2411 135 136 131 chr9 8380567 8381176 -133890268 + LTR18B LTR ERVL 3 614 0 969 228 0 0 chr9 8381265 8381445 -133889999 - HERVL18 LTR ERVL -4803 1244 1065 13385 190 16 4 chr9 8381459 8383700 -133887744 + HERVL18 LTR ERVL 68 2335 -3712 5068 166 8 65 chr9 8383757 8384671 -133886773 + HERVL18 LTR ERVL 2718 3579 -2468 8661 156 6 1 chr9 8384673 8386314 -133885130 + HERVL18 LTR ERVL 4394 6047 0 2250 133 154 82 chr9 8386467 8387030 -133884414 + LTR18B LTR ERVL 1 604 -10 10355 136 43 12 chr9 8387273 8387418 -133884026 - Tigger1 DNA MER2_type -94 2324 2185 2369 91 0 13 chr9 8387418 8387725 -133883719 - AluSq SINE Alu -10 303 1 10355 136 43 12 chr9 8387725 8389779 -133881665 - Tigger1 DNA MER2_type -233 2185 1 260 250 9 26 chr9 8390577 8390693 -133880751 + (TA)n Simple_repeat Simple_repeat 1 114 0 396 59 0 0 chr9 8390698 8390749 -133880695 + (TG)n Simple_repeat Simple_repeat 1 51 0 358 329 43 23 chr9 8390751 8390929 -133880515 + MIR3 SINE MIR 10 194 -14 26 0 0 0 chr9 8391184 8391210 -133880234 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 8391892 8391913 -133879531 + AT_rich Low_complexity Low_complexity 1 21 0 950 288 107 28 chr9 8392050 8392584 -133878860 - L1MC4a LINE L1 -1926 5882 5307 383 303 139 24 chr9 8392587 8392960 -133878484 - L1MC4a LINE L1 -846 5300 4885 707 158 113 15 chr9 8392982 8393115 -133878329 + FAM SINE Alu 20 165 -20 23 68 0 0 chr9 8393116 8393160 -133878284 + AT_rich Low_complexity Low_complexity 1 44 0 329 169 12 0 chr9 8393179 8393262 -133878182 + (TA)n Simple_repeat Simple_repeat 2 85 0 459 337 56 6 chr9 8393262 8393603 -133877841 - L1MC4a LINE L1 -1301 4845 4488 342 0 0 0 chr9 8393823 8393861 -133877583 + (TG)n Simple_repeat Simple_repeat 1 38 0 313 335 76 38 chr9 8393872 8394162 -133877282 - L1MC4a LINE L1 -2476 3670 3370 1681 199 0 4 chr9 8394168 8394449 -133876995 + AluJo SINE Alu 1 280 -32 1288 244 101 7 chr9 8394536 8394950 -133876494 + MLT1D LTR MaLR 51 503 -2 514 217 45 19 chr9 8395029 8395186 -133876258 - HAL1b LINE L1 -849 499 339 24 53 0 0 chr9 8395767 8395805 -133875639 + AT_rich Low_complexity Low_complexity 1 38 0 596 238 50 30 chr9 8397970 8398172 -133873272 + MLT1I LTR MaLR 204 409 0 269 214 71 0 chr9 8398174 8398244 -133873200 + MER20B DNA MER1_type 4 78 -705 21 71 0 0 chr9 8398469 8398511 -133872933 + AT_rich Low_complexity Low_complexity 1 42 0 231 316 13 26 chr9 8398537 8398613 -133872831 + L2 LINE L2 3190 3264 -8 462 301 38 0 chr9 8400635 8400768 -133870676 - MIR SINE MIR -64 198 61 413 306 108 16 chr9 8400815 8401001 -133870443 - MIR SINE MIR -59 203 1 480 319 32 27 chr9 8401421 8401609 -133869835 - MIR SINE MIR -40 222 34 224 100 25 0 chr9 8402695 8402735 -133868709 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 1354 13 0 0 chr9 8402741 8402896 -133868548 - L1PA2 LINE L1 -4 6151 5997 551 29 0 0 chr9 8402896 8402964 -133868480 + L1PA2 LINE L1 5903 5970 -185 21 36 0 0 chr9 8403554 8403582 -133867862 + AT_rich Low_complexity Low_complexity 1 28 0 7071 26 8 0 chr9 8403889 8404757 -133866687 - L1PA5 LINE L1 -5 6149 5275 265 296 35 70 chr9 8405005 8405024 -133866420 - MER5A DNA MER1_type -1 188 170 1361 171 117 107 chr9 8405024 8405122 -133866322 - MSTD LTR MaLR 0 396 300 2342 110 0 3 chr9 8405122 8405432 -133866012 - AluSg SINE Alu -1 309 1 1361 171 117 107 chr9 8405432 8405725 -133865719 - MSTD LTR MaLR -96 300 1 265 296 35 70 chr9 8405725 8405820 -133865624 - MER5A DNA MER1_type -19 170 78 2106 248 55 23 chr9 8405827 8406488 -133864956 + L1ME1 LINE L1 5480 6161 -5 363 44 0 0 chr9 8406615 8406660 -133864784 + (TG)n Simple_repeat Simple_repeat 1 45 0 219 186 0 0 chr9 8406896 8406939 -133864505 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 1436 127 16 65 chr9 8406948 8407255 -133864189 + L1MB8 LINE L1 5887 6178 0 2282 231 49 50 chr9 8407337 8408279 -133863165 + L1MC5 LINE L1 6638 7578 -383 401 258 117 16 chr9 8408420 8408548 -133862896 + MER21B LTR ERV1 363 503 -360 423 194 57 87 chr9 8408580 8408639 -133862805 + L1MC5 LINE L1 7618 7677 -284 2112 134 3 10 chr9 8408639 8408952 -133862492 - AluSx SINE Alu -1 311 1 423 194 57 87 chr9 8408952 8409191 -133862253 + L1MC5 LINE L1 7677 7907 -54 1032 203 219 72 chr9 8410158 8410675 -133860769 + MLT1E1 LTR MaLR 1 654 0 322 205 60 12 chr9 8411427 8411510 -133859934 + MIR3 SINE MIR 87 173 -35 881 282 104 14 chr9 8411643 8412086 -133859358 + L1MC4a LINE L1 5413 5895 -1913 2308 91 3 52 chr9 8412094 8412423 -133859021 + AluSp SINE Alu 1 313 0 280 125 31 0 chr9 8412453 8412517 -133858927 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 71 0 0 chr9 8412782 8412824 -133858620 + AT_rich Low_complexity Low_complexity 1 42 0 615 298 8 55 chr9 8413380 8413618 -133857826 + MIR SINE MIR 20 246 -16 550 220 143 14 chr9 8413612 8413796 -133857648 - MIR SINE MIR -19 243 40 * 2138 255 18 8 chr9 8415363 8415877 -133855567 - LTR40a LTR ERVL 0 519 1 737 263 95 0 chr9 8415877 8416109 -133855335 - HERVL40 LTR ERVL 0 5530 5277 447 322 17 29 chr9 8416095 8416334 -133855110 - MER89-int LTR ERV1 -319 6482 6247 * 285 266 48 96 chr9 8416433 8416662 -133854782 - HERVL40 LTR ERVL -333 2704 2487 716 242 49 65 chr9 8416879 8417209 -133854235 - HERVL40 LTR ERVL -688 4660 2034 1957 222 24 30 chr9 8417243 8417484 -133853960 + MLT1D LTR MaLR 8 249 -256 2129 109 53 34 chr9 8417484 8417841 -133853603 - THE1B LTR MaLR 0 364 1 1957 222 24 30 chr9 8417841 8418100 -133853344 + MLT1D LTR MaLR 249 505 0 6436 251 47 30 chr9 8418102 8420001 -133851443 - HERVL40 LTR ERVL -1269 4261 2330 895 284 74 53 chr9 8420001 8420506 -133850938 + L2 LINE L2 2750 3274 -39 654 279 25 20 chr9 8422170 8422367 -133849077 + MIR SINE MIR 10 207 -55 260 163 20 0 chr9 8422376 8422436 -133849008 + MLT1J LTR MaLR 7 67 -383 297 100 0 0 chr9 8422447 8422497 -133848947 + L1MA9 LINE L1 6263 6312 0 22 0 0 0 chr9 8422502 8422524 -133848920 + AT_rich Low_complexity Low_complexity 1 22 0 6464 72 25 0 chr9 8422732 8424045 -133847399 - L1PA8A LINE L1 0 6131 4800 448 283 51 11 chr9 8424051 8424228 -133847216 + MLT1J2 LTR MaLR 62 245 -205 2090 132 0 14 chr9 8424388 8424684 -133846760 - AluSx SINE Alu -20 292 1 738 264 50 5 chr9 8425711 8425912 -133845532 + MIR SINE MIR 35 244 -18 1023 166 33 6 chr9 8425941 8426122 -133845322 + MER5A DNA MER1_type 1 186 -3 965 314 44 42 chr9 8426198 8426673 -133844771 + MLT1K LTR MaLR 24 499 -89 187 329 21 70 chr9 8426730 8426823 -133844621 + MIR SINE MIR 120 205 -57 881 279 84 60 chr9 8426823 8427274 -133844170 - LTR16B LTR ERVL -2 462 1 187 329 21 70 chr9 8427274 8427323 -133844121 + MIR SINE MIR 205 255 -7 24 32 0 0 chr9 8427874 8427905 -133843539 + AT_rich Low_complexity Low_complexity 1 31 0 2217 115 10 0 chr9 8427985 8428289 -133843155 - AluSp SINE Alu -6 307 1 914 277 4 11 chr9 8429565 8429825 -133841619 + MIR SINE MIR 3 260 -2 198 71 0 0 chr9 8430359 8430387 -133841057 + (CA)n Simple_repeat Simple_repeat 2 29 0 230 380 64 64 chr9 8430577 8430938 -133840506 - L2 LINE L2 -39 3233 2873 436 275 192 0 chr9 8431219 8431412 -133840032 + Charlie8 DNA MER1_type 57 286 -2131 2228 174 59 17 chr9 8431816 8432225 -133839219 - MSTB LTR MaLR 0 426 1 1220 123 22 20 chr9 8433241 8433485 -133837959 - MLT2A2 LTR ERVL 0 453 280 2892 134 0 0 chr9 8433485 8433919 -133837525 + MER57B LTR ERV1 1 434 0 3944 137 41 6 chr9 8433919 8434571 -133836873 + MER57B-int LTR ERV1 1 675 -6862 * 6447 148 68 41 chr9 8434565 8437451 -133833993 + MER57B-int LTR ERV1 288 4041 -1905 5721 107 101 51 chr9 8437442 8439539 -133831905 + MER57B-int LTR ERV1 5307 7537 0 * 2003 104 0 3 chr9 8439539 8439828 -133831616 + MER57B LTR ERV1 1 288 -146 1948 120 7 7 chr9 8439828 8440136 -133831308 - MLT2A2 LTR ERVL -145 308 1 220 136 23 23 chr9 8440801 8440807 -133830637 + (TCCA)n Simple_repeat Simple_repeat 1 6 -38 1602 193 69 33 chr9 8440807 8441257 -133830187 - MER31B LTR ERV1 0 466 1 220 136 23 23 chr9 8441257 8441294 -133830150 + (TCCA)n Simple_repeat Simple_repeat 5 44 0 589 258 47 38 chr9 8441814 8442027 -133829417 - MIR SINE MIR -14 248 34 341 300 67 20 chr9 8442495 8442645 -133828799 - MIR SINE MIR -49 213 57 471 242 16 65 chr9 8442781 8442967 -133828477 + MER104 DNA Tc2 3 179 -1 2035 140 10 3 chr9 8443213 8443513 -133827931 + AluSq SINE Alu 1 302 -11 321 226 13 157 chr9 8443923 8444082 -133827362 + MIR SINE MIR 57 193 -15 303 222 198 0 chr9 8444500 8444581 -133826863 + L2 LINE L2 3176 3272 0 242 301 81 29 chr9 8445989 8446125 -133825319 + MIR SINE MIR 97 239 -23 264 77 0 0 chr9 8446126 8446165 -133825279 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 450 277 21 27 chr9 8446457 8446645 -133824799 + MER5A DNA MER1_type 3 189 0 506 297 35 0 chr9 8447860 8448005 -133823439 - L2 LINE L2 0 3272 3123 689 274 8 60 chr9 8448718 8448952 -133822492 + MIR SINE MIR 41 262 0 407 328 0 10 chr9 8449092 8449287 -133822157 + L1M4 LINE L1 4025 4217 -1929 1516 149 7 24 chr9 8449298 8449656 -133821788 + Charlie3 DNA MER1_type 24 2712 0 368 256 58 12 chr9 8449672 8449844 -133821600 + L1M4 LINE L1 4253 4432 -1714 2362 78 0 10 chr9 8449902 8450208 -133821236 + AluY SINE Alu 1 303 -8 32783 36 40 2 chr9 8450217 8454529 -133816915 - L1PA3 LINE L1 -1052 5094 615 7623 27 2 0 chr9 8454529 8455575 -133815869 + L1PA3 LINE L1 5107 6154 -1 318 226 137 0 chr9 8455666 8455768 -133815676 - L1M4 LINE L1 -1428 4718 4603 311 309 122 11 chr9 8456168 8456356 -133815088 + MLT1J2 LTR MaLR 1 209 -241 276 293 39 34 chr9 8456562 8456770 -133814674 + L1MEd LINE L1 1025 1233 -4886 28 71 0 0 chr9 8457254 8457310 -133814134 + AT_rich Low_complexity Low_complexity 1 56 0 418 68 81 25 chr9 8457356 8457517 -133813927 + (TA)n Simple_repeat Simple_repeat 1 170 0 232 167 28 28 chr9 8457526 8457598 -133813846 + (ATATG)n Simple_repeat Simple_repeat 4 75 0 282 142 47 9 chr9 8457623 8457729 -133813715 + (TA)n Simple_repeat Simple_repeat 1 110 0 304 254 14 0 chr9 8459218 8459289 -133812155 - MER112 DNA MER1_type -7 253 182 180 359 77 8 chr9 8459875 8459992 -133811452 - MIR SINE MIR -73 189 65 2061 126 6 25 chr9 8460807 8461124 -133810320 - AluSx SINE Alu -1 311 1 2101 141 21 26 chr9 8462661 8463038 -133808406 + THE1C LTR MaLR 1 375 0 10215 129 5 33 chr9 8463038 8464663 -133806781 + THE1C-int LTR MaLR 1 1580 0 1571 166 16 75 chr9 8464663 8465048 -133806396 + THE1C LTR MaLR 1 362 -13 24102 140 14 22 chr9 8466605 8473086 -133798358 + L1PA8 LINE L1 4 6484 -3 833 289 56 0 chr9 8473680 8473912 -133797532 + MIR SINE MIR 13 257 -5 1147 189 81 7 chr9 8474376 8474673 -133796771 - MER33 DNA MER1_type -5 319 1 1703 163 52 35 chr9 8475193 8475561 -133795883 - THE1C LTR MaLR 0 375 2 389 302 93 54 chr9 8476750 8477008 -133794436 - L2 LINE L2 -51 3262 2995 2501 74 3 0 chr9 8477176 8477486 -133793958 + AluY SINE Alu 1 311 0 2362 100 7 0 chr9 8477627 8477928 -133793516 - AluY SINE Alu -8 303 1 2376 103 0 0 chr9 8477962 8478273 -133793171 + AluY SINE Alu 1 311 0 2118 122 54 20 chr9 8478472 8478824 -133792620 - THE1B LTR MaLR 0 364 1 936 56 0 0 chr9 8478824 8478950 -133792494 - THE1B-int LTR MaLR 0 1580 1455 1945 138 62 34 chr9 8478964 8479318 -133792126 - THE1B LTR MaLR 0 364 1 498 238 0 62 chr9 8479318 8479478 -133791966 - MLT2D LTR ERVL -83 331 182 583 342 155 47 chr9 8479478 8480638 -133790806 - L2 LINE L2 -715 2599 1314 21 0 0 0 chr9 8481935 8481956 -133789488 + AT_rich Low_complexity Low_complexity 1 21 0 923 199 30 10 chr9 8482054 8482255 -133789189 - MER20 DNA MER1_type -14 205 1 722 333 48 18 chr9 8482589 8482989 -133788455 + L2 LINE L2 2465 2876 -438 400 206 7 110 chr9 8483108 8483254 -133788190 + L2 LINE L2 3183 3313 0 205 222 19 0 chr9 8483497 8483551 -133787893 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 218 227 0 0 chr9 8484037 8484081 -133787363 + (TAA)n Simple_repeat Simple_repeat 3 46 0 222 221 143 13 chr9 8484458 8484535 -133786909 - MIR SINE MIR -56 206 120 184 351 0 0 chr9 8484922 8484999 -133786445 - MIR SINE MIR -25 237 161 1028 251 8 8 chr9 8485008 8485259 -133786185 + MIR SINE MIR 12 262 0 609 245 48 0 chr9 8485258 8485405 -133786039 - MIR SINE MIR -105 157 4 * 1656 209 39 64 chr9 8485485 8486001 -133785443 + MLT1D LTR MaLR 1 503 -2 337 291 131 6 chr9 8486331 8486498 -133784946 + MIR3 SINE MIR 9 192 -64 309 300 60 8 chr9 8486533 8486666 -133784778 - MIR SINE MIR -65 143 34 35 24 0 0 chr9 8487466 8487508 -133783936 + AT_rich Low_complexity Low_complexity 1 42 0 196 327 87 39 chr9 8487911 8488015 -133783429 - L2 LINE L2 0 3313 3205 579 281 27 65 chr9 8488426 8488611 -133782833 - MIR SINE MIR -78 184 7 982 244 133 10 chr9 8490918 8491308 -133780136 + L1ME2 LINE L1 5726 6163 -1 560 259 105 46 chr9 8491784 8492023 -133779421 - MIR SINE MIR 0 262 10 541 192 0 56 chr9 8492448 8492573 -133778871 - MLT1C LTR MaLR 0 467 350 2596 139 38 24 chr9 8492623 8493121 -133778323 - L1MA7 LINE L1 0 6291 5787 470 145 0 0 chr9 8493121 8493197 -133778247 + L1MA7 LINE L1 5732 5807 -505 620 259 44 74 chr9 8493233 8493406 -133778038 - MLT1C LTR MaLR -205 262 98 2371 84 10 0 chr9 8493406 8493714 -133777730 - AluSq SINE Alu 0 313 3 620 259 44 74 chr9 8493714 8493810 -133777634 - MLT1C LTR MaLR -369 98 1 205 103 0 51 chr9 8495038 8495077 -133776367 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2070 93 0 5 chr9 8495897 8496189 -133775255 + L1PB1 LINE L1 5859 6146 -5 355 342 32 19 chr9 8496401 8496556 -133774888 + L2 LINE L2 3116 3272 0 337 271 150 15 chr9 8497204 8497337 -133774107 + MIR SINE MIR 30 180 -82 1002 221 149 24 chr9 8497365 8497791 -133773653 + MLT1D LTR MaLR 12 390 0 28 0 0 0 chr9 8498595 8498623 -133772821 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr9 8499845 8499881 -133771563 + A-rich Low_complexity Low_complexity 2 37 0 2008 157 0 40 chr9 8500213 8500564 -133770880 - MER1B DNA MER1_type 0 337 1 386 318 75 19 chr9 8500678 8500857 -133770587 - MIR SINE MIR -64 144 6 363 326 70 32 chr9 8501090 8501277 -133770167 + MIR SINE MIR 4 197 -65 1240 199 45 87 chr9 8501583 8501964 -133769480 - MLT1A1 LTR MaLR 0 365 1 291 303 174 17 chr9 8502590 8502831 -133768613 + L1MC/D LINE L1 5294 5572 -2236 916 222 4 78 chr9 8502831 8502988 -133768456 + MLT1A1 LTR MaLR 1 133 -232 1807 174 0 10 chr9 8502988 8503293 -133768151 + AluJo SINE Alu 1 302 -10 916 222 4 78 chr9 8503293 8503392 -133768052 + MLT1A1 LTR MaLR 133 238 -127 489 306 41 0 chr9 8504625 8504772 -133766672 + MIR3 SINE MIR 50 202 -6 238 282 24 12 chr9 8505130 8505215 -133766229 - LTR16A1 LTR ERVL -25 432 347 682 271 107 27 chr9 8506332 8506500 -133764944 + LTR16C LTR ERVL 209 407 -84 756 164 99 6 chr9 8506500 8506671 -133764773 - MER53 DNA DNA 0 189 3 682 271 107 27 chr9 8506671 8506764 -133764680 + LTR16C LTR ERVL 407 491 0 509 284 52 90 chr9 8506908 8507274 -133764170 + MLT1J LTR MaLR 158 509 -2 249 333 0 29 chr9 8507326 8507395 -133764049 + L2 LINE L2 3009 3075 -238 204 330 144 0 chr9 8507446 8507543 -133763901 + MIR SINE MIR 152 262 0 2051 142 3 3 chr9 8507822 8508125 -133763319 + AluSg SINE Alu 1 303 -7 219 180 0 20 chr9 8508127 8508177 -133763267 + (ATTG)n Simple_repeat Simple_repeat 4 52 0 394 261 9 0 chr9 8508180 8508295 -133763149 + L1MC4 LINE L1 7922 8037 -5 256 220 186 0 chr9 8508342 8508401 -133763043 - MIR3 SINE MIR -48 160 91 223 305 0 0 chr9 8510084 8510143 -133761301 + (CA)n Simple_repeat Simple_repeat 2 60 0 302 298 165 0 chr9 8510158 8510279 -133761165 - L2 LINE L2 -12 3301 3161 1598 203 11 44 chr9 8510407 8510767 -133760677 + MER7A DNA MER2_type 1 346 0 193 377 57 16 chr9 8511162 8511284 -133760160 - L2 LINE L2 -9 3263 3137 566 345 22 9 chr9 8511400 8511632 -133759812 - MIR SINE MIR -10 252 18 1843 175 63 26 chr9 8511690 8512072 -133759372 - MSTD LTR MaLR 0 396 1 258 229 0 0 chr9 8512446 8512516 -133758928 + GA-rich Low_complexity Low_complexity 3 72 0 685 281 54 40 chr9 8513376 8513600 -133757844 - MIR SINE MIR -18 244 18 562 275 39 28 chr9 8513654 8513832 -133757612 + MLT1K LTR MaLR 26 205 -383 451 265 113 63 chr9 8513835 8514073 -133757371 + MLT1K LTR MaLR 331 580 -8 1907 197 14 3 chr9 8514418 8514769 -133756675 - MLT1A1 LTR MaLR 0 365 11 1573 214 27 24 chr9 8514784 8515157 -133756287 + MLT1A2 LTR MaLR 1 374 0 188 200 22 22 chr9 8515367 8515412 -133756032 + L2 LINE L2 3264 3308 -5 2343 167 151 10 chr9 8515435 8515697 -133755747 - MLT2B3 LTR ERVL 0 554 330 203 0 37 0 chr9 8515697 8515724 -133755720 + (GA)n Simple_repeat Simple_repeat 2 29 0 2343 167 151 10 chr9 8515724 8515945 -133755499 - MLT2B3 LTR ERVL -224 330 3 215 227 0 0 chr9 8516041 8516085 -133755359 + (TATG)n Simple_repeat Simple_repeat 1 44 0 507 33 0 0 chr9 8516087 8516148 -133755296 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 420 269 40 86 chr9 8516932 8517107 -133754337 + MER63A DNA MER1_type 44 210 0 23 0 0 0 chr9 8517406 8517429 -133754015 + AT_rich Low_complexity Low_complexity 1 23 0 210 135 19 39 chr9 8518092 8518144 -133753300 + GA-rich Low_complexity Low_complexity 2 52 0 358 252 74 0 chr9 8518333 8518468 -133752976 + L1ME4a LINE L1 5690 5834 -287 1384 230 48 19 chr9 8518541 8518985 -133752459 + L1ME1 LINE L1 5688 6137 -27 303 253 100 65 chr9 8518990 8519019 -133752425 + L1ME4a LINE L1 5879 5906 -215 1811 178 45 17 chr9 8519019 8519374 -133752070 - MLT1A1 LTR MaLR 0 365 1 303 253 100 65 chr9 8519374 8519514 -133751930 + L1ME4a LINE L1 5906 6054 -67 239 276 13 13 chr9 8519562 8519638 -133751806 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 23 54 0 0 chr9 8520106 8520143 -133751301 + AT_rich Low_complexity Low_complexity 1 37 0 203 291 219 40 chr9 8520199 8520350 -133751094 - MIR SINE MIR -84 178 1 2731 29 3 0 chr9 8521630 8521940 -133749504 - AluY SINE Alu 0 311 1 189 226 0 0 chr9 8521979 8522032 -133749412 + (TA)n Simple_repeat Simple_repeat 2 54 0 388 135 135 0 chr9 8524457 8524531 -133746913 - MLT1B LTR MaLR -305 85 2 212 253 0 131 chr9 8524721 8524820 -133746624 - MIR SINE MIR -89 173 88 488 333 64 5 chr9 8526104 8526308 -133745136 - MIR SINE MIR 0 262 47 415 238 25 16 chr9 8527137 8527259 -133744185 - L1ME3A LINE L1 -284 5886 5764 21 0 0 0 chr9 8527622 8527643 -133743801 + AT_rich Low_complexity Low_complexity 1 21 0 321 264 110 12 chr9 8527970 8528157 -133743287 - L1ME3 LINE L1 -289 5873 5665 659 302 74 20 chr9 8528221 8529007 -133742437 - L1ME3 LINE L1 -649 5513 4677 417 293 91 55 chr9 8529073 8529636 -133741808 - L1ME3 LINE L1 -1952 4194 3612 341 278 137 67 chr9 8529723 8530007 -133741437 - L1ME3 LINE L1 -2611 3535 3232 2718 84 16 11 chr9 8530187 8530558 -133740886 + THE1C LTR MaLR 1 373 -2 4666 67 2 2 chr9 8532456 8533057 -133738387 - L1PA7 LINE L1 0 6154 5554 29 47 0 0 chr9 8533064 8533107 -133738337 + AT_rich Low_complexity Low_complexity 1 43 0 789 217 56 28 chr9 8533907 8534087 -133737357 - MER3 DNA MER1_type -24 185 1 181 270 0 0 chr9 8534347 8534384 -133737060 + L2 LINE L2 3256 3292 -21 299 219 37 0 chr9 8534394 8534476 -133736968 - LTR50 LTR ERVL 0 795 711 1141 245 133 28 chr9 8534502 8535000 -133736444 - LTR50 LTR ERVL -142 653 1 3005 201 98 28 chr9 8535131 8536568 -133734876 + L1MB5 LINE L1 4304 5851 -323 182 235 0 0 chr9 8536644 8536678 -133734766 - L2 LINE L2 -6 3266 3233 499 257 151 29 chr9 8536680 8536886 -133734558 - MIR SINE MIR 0 262 32 201 368 15 0 chr9 8537827 8537895 -133733549 + MIR SINE MIR 54 122 -86 24 96 0 0 chr9 8537926 8537999 -133733445 + AT_rich Low_complexity Low_complexity 1 73 0 466 371 0 10 chr9 8538003 8538197 -133733247 - MIR SINE MIR -13 249 58 193 279 29 44 chr9 8538289 8538357 -133733087 + L2 LINE L2 3194 3260 -12 246 213 0 0 chr9 8538942 8538989 -133732455 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 75 0 0 chr9 8538989 8539042 -133732402 + AT_rich Low_complexity Low_complexity 1 53 0 1584 205 46 10 chr9 8540501 8540852 -133730592 + MLT1A1 LTR MaLR 1 418 -10 255 333 26 9 chr9 8541165 8541279 -133730165 - MIR SINE MIR -55 207 92 243 295 109 12 chr9 8541596 8541918 -133729526 - L1MEc LINE L1 -2169 4046 3694 249 303 79 0 chr9 8541949 8542025 -133729419 + L2 LINE L2 3192 3273 -40 209 204 0 20 chr9 8542045 8542094 -133729350 + GA-rich Low_complexity Low_complexity 3 50 0 993 325 88 45 chr9 8542161 8543285 -133728159 - L1MEc LINE L1 -2659 3556 2384 531 220 15 38 chr9 8543482 8543614 -133727830 + FLAM_A SINE Alu 8 136 -6 313 318 136 15 chr9 8543660 8543924 -133727520 - L1MEc LINE L1 -3998 2398 2103 1505 168 44 54 chr9 8544619 8544916 -133726528 - AluJo SINE Alu -13 299 6 261 244 73 49 chr9 8544986 8545109 -133726335 - HAL1 LINE L1 -1151 1356 1231 23 54 0 0 chr9 8545253 8545290 -133726154 + AT_rich Low_complexity Low_complexity 1 37 0 279 310 23 11 chr9 8546025 8546112 -133725332 + MIR SINE MIR 57 144 -64 234 91 0 0 chr9 8547393 8547426 -133724018 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr9 8547747 8547770 -133723674 + (CA)n Simple_repeat Simple_repeat 2 24 0 430 243 13 185 chr9 8548566 8548866 -133722578 + MIR SINE MIR 4 248 -14 225 178 0 0 chr9 8549011 8549056 -133722388 + (CA)n Simple_repeat Simple_repeat 1 45 0 231 356 30 0 chr9 8550278 8550410 -133721034 + LTR16A LTR ERVL 13 148 -302 253 321 44 50 chr9 8551880 8552101 -133719343 - MIR3 SINE MIR -34 228 14 802 297 38 4 chr9 8552924 8553187 -133718257 + L2 LINE L2 2896 3167 -146 539 286 124 0 chr9 8553208 8553369 -133718075 + MIR SINE MIR 13 193 -69 486 304 0 14 chr9 8553416 8553554 -133717890 + L2 LINE L2 3178 3313 0 2602 163 5 66 chr9 8554774 8555346 -133716098 + MER74A LTR ERVL 1 537 -21 1111 188 39 0 chr9 8555810 8556018 -133715426 + MER58A DNA MER1_type 1 216 -8 2102 113 0 3 chr9 8556396 8556704 -133714740 + AluSq SINE Alu 1 307 0 351 130 0 0 chr9 8556877 8556931 -133714513 + MER20 DNA MER1_type 31 84 -135 6579 156 12 21 chr9 8556979 8558482 -133712962 - Ricksha DNA DNA -13 3238 1711 592 152 16 24 chr9 8558468 8558593 -133712851 - Ricksha DNA DNA -1049 132 9 * 497 224 9 0 chr9 8558612 8558719 -133712725 + MER20 DNA MER1_type 107 214 -5 180 240 135 31 chr9 8558724 8558820 -133712624 + MIR SINE MIR 102 207 -55 21 36 0 0 chr9 8558854 8558882 -133712562 + AT_rich Low_complexity Low_complexity 1 28 0 712 174 52 0 chr9 8559817 8559932 -133711512 - FLAM_A SINE Alu -9 124 4 196 392 13 0 chr9 8562604 8562683 -133708761 + L2 LINE L2 3164 3243 -29 428 266 16 23 chr9 8562844 8562972 -133708472 - MIR SINE MIR -21 241 115 216 202 26 26 chr9 8563055 8563169 -133708275 + (TA)n Simple_repeat Simple_repeat 2 115 0 459 224 0 112 chr9 8563324 8563458 -133707986 - MIR3 SINE MIR -46 162 44 227 217 49 105 chr9 8563648 8563791 -133707653 + L2 LINE L2 2878 3012 -260 486 227 109 0 chr9 8563896 8564006 -133707438 + MER45A DNA AcHobo 57 178 0 248 297 81 0 chr9 8564065 8564139 -133707305 + L2 LINE L2 3136 3215 -57 240 352 16 39 chr9 8564968 8565071 -133706373 - L2 LINE L2 -7 3306 3207 894 223 9 40 chr9 8565071 8565295 -133706149 + MIR SINE MIR 2 218 -44 2121 133 7 0 chr9 8565779 8566088 -133705356 - AluSx SINE Alu 0 312 2 2264 101 0 16 chr9 8566161 8566468 -133704976 - AluSg SINE Alu -8 302 1 2013 137 21 6 chr9 8568151 8568487 -133702957 + L1P4 LINE L1 5393 5733 -432 1463 214 31 26 chr9 8568538 8568922 -133702522 - MER89 LTR ERV1 0 559 174 318 143 32 0 chr9 8568922 8568985 -133702459 - MER89 LTR ERV1 -494 65 1 995 150 56 100 chr9 8569026 8569106 -133702338 + MER33 DNA MER1_type 1 83 -2502 2215 71 0 52 chr9 8569106 8569416 -133702028 + AluY SINE Alu 1 294 -17 995 150 56 100 chr9 8569416 8569674 -133701770 + MER33 DNA MER1_type 83 324 0 413 322 17 0 chr9 8573599 8573714 -133697730 + MIR3 SINE MIR 86 202 -6 28 48 0 0 chr9 8574103 8574145 -133697299 + AT_rich Low_complexity Low_complexity 1 42 0 262 239 103 77 chr9 8575321 8575438 -133696006 - MER20B DNA MER1_type -607 176 57 1991 165 123 8 chr9 8575929 8576311 -133695133 - MSTA LTR MaLR 0 428 3 1648 171 3 58 chr9 8576534 8576712 -133694732 - AluJo SINE Alu -2 310 157 1996 144 17 0 chr9 8576712 8577003 -133694441 - AluSx SINE Alu -16 296 1 1648 171 3 58 chr9 8577003 8577151 -133694293 - AluJo SINE Alu -155 157 2 442 326 47 23 chr9 8577421 8577593 -133693851 - MIR SINE MIR -50 212 37 201 310 42 0 chr9 8577814 8577885 -133693559 - MIR3 SINE MIR -11 197 124 363 277 97 13 chr9 8577886 8578041 -133693403 + MLT1J2 LTR MaLR 1 168 -282 228 86 0 0 chr9 8578062 8578097 -133693347 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 28 29 0 0 chr9 8578181 8578216 -133693228 + AT_rich Low_complexity Low_complexity 1 35 0 820 192 7 0 chr9 8578223 8578369 -133693075 - AluJb SINE Alu -30 282 136 260 243 0 27 chr9 8578383 8578457 -133692987 + MLT1I LTR MaLR 336 407 -2 486 272 97 20 chr9 8579202 8579426 -133692018 + L1M4b LINE L1 11 549 -6306 1121 267 40 14 chr9 8579539 8579959 -133691485 + L1ME1 LINE L1 5731 6161 -5 184 283 321 9 chr9 8580173 8580279 -133691165 - MIR3 SINE MIR -16 192 54 269 294 147 45 chr9 8580857 8581034 -133690410 + MIR SINE MIR 7 201 -61 227 343 95 0 chr9 8581589 8581694 -133689750 + L2 LINE L2 3150 3264 -8 1882 127 25 28 chr9 8583230 8583513 -133687931 - AluY SINE Alu -29 282 1 23 0 0 0 chr9 8585587 8585610 -133685834 + AT_rich Low_complexity Low_complexity 1 23 0 2088 117 7 3 chr9 8585706 8586021 -133685423 - AluSq SINE Alu 0 316 1 22 56 0 0 chr9 8587361 8587397 -133684047 + AT_rich Low_complexity Low_complexity 1 36 0 183 292 167 31 chr9 8587872 8587968 -133683476 - L2 LINE L2 -1 3312 3204 328 367 130 18 chr9 8588621 8589013 -133682431 - L2 LINE L2 0 3272 2837 1259 123 36 5 chr9 8589163 8589382 -133682062 - L1MA8 LINE L1 -5 6286 6061 38561 69 10 8 chr9 8589389 8595484 -133675960 - L1PA3 LINE L1 -3 6152 44 4132 145 9 0 chr9 8595484 8596298 -133675146 - L1MA8 LINE L1 -744 5402 4450 1655 154 0 0 chr9 8596324 8596596 -133674848 - L1MA8 LINE L1 -1800 4346 4075 1210 168 15 0 chr9 8596817 8597020 -133674424 + L1PA15 LINE L1 5939 6144 -21 338 314 128 21 chr9 8597436 8597678 -133673766 - LTR33A LTR ERVL -129 394 127 1175 226 146 45 chr9 8597912 8598289 -133673155 + LTR48 LTR ERV1 1 415 -372 574 178 34 126 chr9 8598292 8598561 -133672883 + LTR48 LTR ERV1 544 787 0 266 263 52 0 chr9 8599511 8599614 -133671830 - Charlie8 DNA MER1_type -1014 1403 203 223 277 89 50 chr9 8599645 8599746 -133671698 - L2 LINE L2 -283 3030 2926 598 245 0 73 chr9 8599746 8599791 -133671653 - MER5B DNA MER1_type 0 178 131 2537 81 0 0 chr9 8599791 8600100 -133671344 - AluSx SINE Alu -3 309 1 598 245 0 73 chr9 8600100 8600246 -133671198 - MER5B DNA MER1_type -47 131 1 240 326 11 11 chr9 8600252 8600341 -133671103 - Charlie8 DNA MER1_type -2201 216 128 281 262 72 42 chr9 8600829 8601066 -133670378 + L1ME4a LINE L1 5872 6115 -6 282 29 0 0 chr9 8601116 8601151 -133670293 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr9 8601209 8601233 -133670211 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 280 230 81 23 chr9 8602085 8602172 -133669272 - MIR3 SINE MIR -50 158 67 1651 166 60 21 chr9 8603257 8603570 -133667874 - MER2 DNA MER2_type 0 345 17 2423 127 27 78 chr9 8603570 8604019 -133667425 - MSTB LTR MaLR 0 426 1 1651 166 60 21 chr9 8604019 8604037 -133667407 - MER2 DNA MER2_type -328 17 1 227 228 35 0 chr9 8604104 8604161 -133667283 - MLT1J LTR MaLR -30 481 423 266 308 0 0 chr9 8604466 8604531 -133666913 + L3b LINE CR1 1276 1340 -243 7998 25 2 2 chr9 8604674 8606392 -133665052 - L1PA3 LINE L1 -1 6154 4437 886 9 0 0 chr9 8606392 8606499 -133664945 + L1PA3 LINE L1 4326 4432 -1714 193 245 0 38 chr9 8606715 8606768 -133664676 - L2 LINE L2 0 3313 3263 198 71 0 0 chr9 8607891 8607919 -133663525 + (TA)n Simple_repeat Simple_repeat 2 29 0 260 222 69 0 chr9 8608808 8608880 -133662564 - MIR SINE MIR -88 174 98 8349 130 16 1 chr9 8609140 8610409 -133661035 + HSMAR2 DNA Mariner 5 1292 -10 363 325 80 51 chr9 8610865 8611216 -133660228 + L2 LINE L2 2535 2895 -419 301 369 0 39 chr9 8611379 8611509 -133659935 + L2 LINE L2 3133 3257 -15 460 243 59 64 chr9 8611523 8611587 -133659857 - MIR SINE MIR -3 259 196 2247 192 12 19 chr9 8611587 8611820 -133659624 - MSTB LTR MaLR -2 424 194 1395 234 3 23 chr9 8611820 8612123 -133659321 - AluJb SINE Alu -15 297 1 2247 192 12 19 chr9 8612123 8612316 -133659128 - MSTB LTR MaLR -232 194 1 460 243 59 64 chr9 8612316 8612472 -133658972 - MIR SINE MIR -66 196 40 208 253 220 22 chr9 8613590 8613681 -133657763 + MIR SINE MIR 36 144 -118 181 314 114 38 chr9 8613803 8613908 -133657536 + L3b LINE CR1 1296 1408 -175 804 139 0 39 chr9 8613960 8614089 -133657355 - FLAM_C SINE Alu -19 124 1 218 242 16 16 chr9 8615055 8615117 -133656327 + L2 LINE L2 3251 3312 -1 758 263 124 0 chr9 8615224 8615441 -133656003 + MIR SINE MIR 14 257 -5 205 281 158 23 chr9 8615515 8615784 -133655660 - L2 LINE L2 0 3272 2928 851 201 36 82 chr9 8615853 8616072 -133655372 - MER20 DNA MER1_type -10 209 1 183 379 81 0 chr9 8617497 8617621 -133653823 + L3b LINE CR1 1377 1510 -73 186 167 0 0 chr9 8618196 8618232 -133653212 + (TG)n Simple_repeat Simple_repeat 2 37 0 317 266 38 0 chr9 8618824 8618903 -133652541 + L2 LINE L2 3190 3271 -1 402 100 0 0 chr9 8619771 8619831 -133651613 + (TG)n Simple_repeat Simple_repeat 2 61 0 1242 218 157 11 chr9 8620677 8621302 -133650142 - LTR50 LTR ERVL 0 795 5 296 396 132 7 chr9 8621708 8621852 -133649592 + MER91A DNA MER1_type 34 195 -1 194 263 70 0 chr9 8621883 8621940 -133649504 + L2 LINE L2 3006 3066 -206 1286 211 34 4 chr9 8622328 8622757 -133648687 + L1MB8 LINE L1 5137 5578 -596 2020 132 140 8 chr9 8622766 8623144 -133648300 - MSTA LTR MaLR 0 428 1 8968 168 19 31 chr9 8623149 8624814 -133646630 - MSTA-int LTR MaLR -6 1645 1 2250 127 99 10 chr9 8624814 8625207 -133646237 - MSTA LTR MaLR 0 428 1 1469 176 35 6 chr9 8625207 8625526 -133645918 + L1MB8 LINE L1 5583 5910 -268 398 145 0 0 chr9 8625528 8625590 -133645854 - MADE1 DNA Mariner -18 62 1 394 228 11 5 chr9 8625590 8625778 -133645666 + L1MB8 LINE L1 5908 6172 -6 400 349 24 8 chr9 8626000 8626126 -133645318 - L2 LINE L2 0 3272 3145 761 326 143 33 chr9 8626175 8626777 -133644667 - L2 LINE L2 -653 2661 1994 241 174 0 0 chr9 8627091 8627137 -133644307 - L1MB1 LINE L1 -1 6167 6122 2801 110 19 14 chr9 8627139 8627567 -133643877 - L1PA16 LINE L1 0 6166 5737 3100 149 5 13 chr9 8627567 8628362 -133643082 + L1PA16 LINE L1 4949 5737 -429 473 162 108 0 chr9 8628360 8628471 -133642973 - L1MB1 LINE L1 -39 6129 6007 * 841 180 19 0 chr9 8628475 8628636 -133642808 - L1MB1 LINE L1 -236 5932 5769 * 24463 63 5 2 chr9 8628635 8632603 -133638841 - L1PA6 LINE L1 0 6154 2175 3852 131 29 3 chr9 8632603 8633222 -133638222 - MER11B LTR ERVK -601 635 1 4825 167 34 5 chr9 8633222 8634728 -133636716 - L1PA14 LINE L1 -332 6480 4935 5285 167 19 10 chr9 8634730 8636296 -133635148 + L1PB1 LINE L1 4573 6143 -8 11262 199 39 32 chr9 8636311 8640533 -133630911 - L1PA14 LINE L1 -1851 4946 728 279 0 0 0 chr9 8640533 8640564 -133630880 + (CA)n Simple_repeat Simple_repeat 1 31 0 11262 199 39 32 chr9 8640564 8641173 -133630271 - L1PA14 LINE L1 -6069 728 125 2294 272 71 28 chr9 8641178 8642517 -133628927 - L1M4 LINE L1 -2478 3668 2273 27 0 0 0 chr9 8642599 8642626 -133628818 + AT_rich Low_complexity Low_complexity 1 27 0 203 0 37 0 chr9 8643102 8643129 -133628315 + (TTA)n Simple_repeat Simple_repeat 3 30 0 278 267 139 10 chr9 8644426 8644527 -133626917 + LTR16A LTR ERVL 337 450 0 255 176 68 27 chr9 8644528 8644602 -133626842 + MLT1K LTR MaLR 496 572 -16 832 166 21 100 chr9 8644879 8645120 -133626324 - L1MA4A LINE L1 -114 6189 5968 * 1627 51 0 0 chr9 8645097 8645312 -133626132 - L1P2 LINE L1 -644 5510 5296 * 1652 121 18 33 chr9 8645303 8645575 -133625869 + L1M1 LINE L1 5465 5732 -571 * 12292 218 55 22 chr9 8645573 8647627 -133623817 - L1 LINE L1 -842 6006 4023 234 0 0 0 chr9 8647627 8647653 -133623791 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 12292 218 55 22 chr9 8647653 8649536 -133621908 - L1 LINE L1 -2825 4023 1908 3659 202 61 13 chr9 8649544 8650309 -133621135 - L1 LINE L1 -6067 782 2 388 222 5 62 chr9 8651082 8651191 -133620253 - MLT2E LTR ERVL -336 185 36 24 0 0 0 chr9 8651458 8651482 -133619962 + AT_rich Low_complexity Low_complexity 1 24 0 201 268 0 36 chr9 8652384 8652440 -133619004 + GA-rich Low_complexity Low_complexity 4 57 0 437 315 56 29 chr9 8653165 8653718 -133617726 - L1MC4a LINE L1 -846 5445 5297 286 245 170 34 chr9 8653805 8654070 -133617374 - L1MC4a LINE L1 -1773 4373 4073 2429 77 3 3 chr9 8654136 8654447 -133616997 - AluY SINE Alu 0 311 1 321 306 32 64 chr9 8654451 8654670 -133616774 - L1MC4a LINE L1 -2117 4029 3818 723 119 24 8 chr9 8654694 8654820 -133616624 - L1MA5A LINE L1 -4 6293 6166 2716 125 26 9 chr9 8654849 8655304 -133616140 - L1PA16 LINE L1 -9 6157 5695 5483 245 66 25 chr9 8655306 8656071 -133615373 - L1M4 LINE L1 -758 5388 4656 1702 187 0 22 chr9 8656071 8656386 -133615058 - AluJo SINE Alu 0 312 5 5483 245 66 25 chr9 8656386 8657893 -133613551 - L1M4 LINE L1 -1490 4656 2762 287 266 64 0 chr9 8658096 8658190 -133613254 - L1PA12 LINE L1 -5398 2183 2084 914 343 20 51 chr9 8658289 8658922 -133612522 - L1PA12 LINE L1 -6173 1401 788 227 272 52 81 chr9 8658951 8659124 -133612320 - L1MC4a LINE L1 -2342 3804 3637 253 328 55 55 chr9 8659168 8659351 -133612093 - MER5A DNA MER1_type -2 187 5 1504 319 83 25 chr9 8659421 8660238 -133611206 + HAL1 LINE L1 10 874 -1633 185 62 0 31 chr9 8660247 8660279 -133611165 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 3415 25 0 0 chr9 8660279 8660674 -133610770 - L1PA4 LINE L1 -24 6131 5737 363 0 0 0 chr9 8660671 8660711 -133610733 + L1P2 LINE L1 5618 5657 -498 * 461 238 115 73 chr9 8660707 8661282 -133610162 + HAL1 LINE L1 863 1461 -1046 456 318 40 0 chr9 8661282 8661430 -133610014 + L2 LINE L2 3160 3313 0 381 316 36 14 chr9 8661621 8661760 -133609684 - L3 LINE CR1 -8 1569 1428 2030 130 0 0 chr9 8662234 8662511 -133608933 - AluSq SINE Alu -15 298 22 339 270 132 7 chr9 8662774 8662926 -133608518 + MIR3 SINE MIR 31 201 -7 1997 112 13 16 chr9 8662972 8663275 -133608169 - AluSq SINE Alu -11 302 1 293 306 50 16 chr9 8663674 8663795 -133607649 + MIR3 SINE MIR 8 132 -76 200 231 19 19 chr9 8663952 8664004 -133607440 - L2 LINE L2 -8 3305 3254 415 232 141 68 chr9 8664522 8664699 -133606745 - MIR SINE MIR -24 238 49 4627 88 8 8 chr9 8664952 8665602 -133605842 + L1PA10 LINE L1 5519 6168 0 302 186 253 98 chr9 8665640 8665834 -133605610 + MLT1H LTR MaLR 1 224 -325 2388 151 45 0 chr9 8665873 8666270 -133605174 - MSTB LTR MaLR -11 415 1 36842 98 6 6 chr9 8666479 8672625 -133598819 - L1PA6 LINE L1 -4 6150 11 1986 111 0 14 chr9 8673592 8673871 -133597573 + AluSc SINE Alu 1 275 -34 756 32 0 0 chr9 8673871 8673966 -133597478 + (TC)n Simple_repeat Simple_repeat 2 96 0 2485 56 0 3 chr9 8674054 8674359 -133597085 + AluY SINE Alu 1 304 -7 1745 44 0 31 chr9 8674529 8674757 -133596687 + L1PA5 LINE L1 5928 6148 -6 203 211 0 0 chr9 8675280 8675318 -133596126 - MIR SINE MIR -72 136 99 264 170 0 0 chr9 8675425 8675478 -133595966 + (TATG)n Simple_repeat Simple_repeat 2 54 0 353 292 175 38 chr9 8675818 8676212 -133595232 + MLT1L LTR MaLR 166 613 -2 216 261 0 0 chr9 8676409 8676455 -133594989 - MER5A DNA MER1_type -128 61 16 234 174 0 0 chr9 8676582 8676628 -133594816 + (ATG)n Simple_repeat Simple_repeat 3 48 0 788 277 38 34 chr9 8676657 8676809 -133594635 + MIR SINE MIR 7 162 -100 1899 148 49 25 chr9 8676809 8677175 -133594269 + THE1C LTR MaLR 1 375 0 788 277 38 34 chr9 8677175 8677257 -133594187 + MIR SINE MIR 162 242 -20 323 260 79 0 chr9 8679143 8679270 -133592174 - L1ME4a LINE L1 -50 6071 5935 350 299 216 0 chr9 8680867 8681001 -133590443 - MER5A DNA MER1_type -2 187 25 2750 20 0 0 chr9 8682165 8682468 -133588976 + AluY SINE Alu 1 303 -8 595 324 29 0 chr9 8683885 8684055 -133587389 + MIR3 SINE MIR 19 193 -15 10675 200 27 41 chr9 8684553 8685009 -133586435 - L1PA16 LINE L1 0 6166 5705 2584 108 14 3 chr9 8685009 8685379 -133586065 - THE1C LTR MaLR -1 374 1 10675 200 27 41 chr9 8685379 8685793 -133585651 - L1PA16 LINE L1 -461 5705 5287 3780 94 14 38 chr9 8685793 8686418 -133585026 - L1MA2 LINE L1 0 6304 5695 10675 200 27 41 chr9 8686418 8687266 -133584178 - L1PA16 LINE L1 -879 5287 4429 2316 98 0 16 chr9 8687266 8687582 -133583862 - AluY SINE Alu 0 311 1 10675 200 27 41 chr9 8687582 8689752 -133581692 - L1PA16 LINE L1 -1737 4429 2304 * 20968 47 3 1 chr9 8689742 8693164 -133578280 - L1PA5 LINE L1 0 6154 2725 209 179 39 77 chr9 8693279 8693357 -133578087 + A-rich Low_complexity Low_complexity 5 79 0 516 268 0 9 chr9 8695235 8695347 -133576097 + MIR SINE MIR 41 151 -111 210 71 0 0 chr9 8695917 8695945 -133575499 + (TA)n Simple_repeat Simple_repeat 1 28 0 301 263 131 0 chr9 8695948 8696047 -133575397 - MIR SINE MIR -25 237 126 377 265 103 0 chr9 8696383 8696500 -133574944 + Zaphod DNA AcHobo 3900 4028 -3 516 271 17 0 chr9 8696501 8696619 -133574825 - MIR SINE MIR -137 125 6 336 219 93 35 chr9 8696978 8697163 -133574281 + MIR SINE MIR 10 248 -14 580 266 83 16 chr9 8697216 8697408 -133574036 - MIR SINE MIR -1 261 57 1041 243 31 20 chr9 8697414 8697735 -133573709 - MER58B DNA MER1_type 0 341 1 1502 214 57 10 chr9 8698854 8699261 -133572183 + LTR37A LTR ERV1 1 426 0 245 325 105 26 chr9 8700815 8700929 -133570515 - L2 LINE L2 -12 3260 3138 625 355 132 20 chr9 8701481 8702338 -133569106 - L2 LINE L2 -825 2489 1537 417 225 28 84 chr9 8703956 8704098 -133567346 + MIR SINE MIR 8 141 -121 181 246 31 77 chr9 8704280 8704345 -133567099 - L2 LINE L2 -45 3268 3207 783 290 75 36 chr9 8704367 8704726 -133566718 + LTR33 LTR ERVL 149 521 0 397 339 48 16 chr9 8704865 8705051 -133566393 - MIR SINE MIR -70 192 1 493 276 6 41 chr9 8706129 8706299 -133565145 + MIR SINE MIR 29 191 -69 197 367 41 31 chr9 8708059 8708157 -133563287 - L2 LINE L2 -32 3240 3142 1140 189 42 0 chr9 8708425 8708685 -133562759 + L1MA4 LINE L1 6018 6288 -12 767 297 64 55 chr9 8708961 8709399 -133562045 - L1MEd LINE L1 -5613 506 65 503 329 70 51 chr9 8709557 8709913 -133561531 + L2 LINE L2 2939 3301 -12 537 258 22 39 chr9 8710513 8710691 -133560753 + MER5B DNA MER1_type 2 176 -2 291 337 0 0 chr9 8710768 8710860 -133560584 + L2 LINE L2 3180 3271 -1 21 36 0 0 chr9 8711746 8711774 -133559670 + AT_rich Low_complexity Low_complexity 1 28 0 369 43 0 0 chr9 8711980 8712027 -133559417 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 5100 171 35 24 chr9 8713493 8714867 -133556577 - L1MA9 LINE L1 0 6312 4927 2742 136 28 29 chr9 8714857 8715488 -133555956 - L1P4 LINE L1 -425 5740 5113 * 1154 193 75 55 chr9 8715487 8715939 -133555505 - L1MA9 LINE L1 -2757 3389 2929 * 859 254 39 21 chr9 8715990 8716269 -133555175 + L1MA9 LINE L1 5987 6270 -42 4029 146 84 40 chr9 8716651 8717540 -133553904 - L1PB4 LINE L1 0 6156 5229 6154 147 17 4 chr9 8717540 8718558 -133552886 + Ricksha_c DNA DNA 906 1936 -110 333 0 0 0 chr9 8718723 8718760 -133552684 + (TC)n Simple_repeat Simple_repeat 2 38 0 321 321 0 0 chr9 8718760 8718844 -133552600 - L1MC4 LINE L1 -1341 6701 6618 21 36 0 0 chr9 8718962 8718990 -133552454 + AT_rich Low_complexity Low_complexity 1 28 0 2118 124 0 7 chr9 8719093 8719391 -133552053 + AluSx SINE Alu 1 296 -16 43 56 0 0 chr9 8719529 8719600 -133551844 + AT_rich Low_complexity Low_complexity 1 71 0 1864 117 8 4 chr9 8721277 8721542 -133549902 - AluSc SINE Alu -9 300 35 1061 266 100 35 chr9 8721673 8722185 -133549259 - MLT1H LTR MaLR 0 549 5 625 266 141 0 chr9 8722319 8722518 -133548926 + MIR SINE MIR 23 249 -13 310 266 120 20 chr9 8723686 8723820 -133547624 - MIR SINE MIR -62 146 38 279 0 0 0 chr9 8724031 8724062 -133547382 + (CA)n Simple_repeat Simple_repeat 1 31 0 2091 94 59 0 chr9 8725266 8725552 -133545892 - AluSg SINE Alu -5 305 3 359 307 90 16 chr9 8726456 8726645 -133544799 + MIR SINE MIR 49 251 -11 281 330 50 105 chr9 8727566 8727908 -133543536 - L2 LINE L2 0 3272 2950 242 332 237 12 chr9 8728175 8728512 -133542932 - L2 LINE L2 -925 2389 1977 704 270 37 68 chr9 8729179 8729534 -133541910 - MLT1H LTR MaLR -131 418 75 310 290 0 0 chr9 8729614 8729683 -133541761 + MIR SINE MIR 3 71 -191 195 196 0 65 chr9 8729735 8729781 -133541663 + MIR SINE MIR 201 243 -19 478 224 106 12 chr9 8730051 8730212 -133541232 - L1ME LINE L1 -439 5682 5507 483 18 0 0 chr9 8732024 8732080 -133539364 + (TA)n Simple_repeat Simple_repeat 2 57 0 1971 186 21 8 chr9 8732158 8732539 -133538905 + MLT1B LTR MaLR 3 388 -2 24 32 0 0 chr9 8732601 8732632 -133538812 + AT_rich Low_complexity Low_complexity 1 31 0 288 210 32 0 chr9 8732788 8732850 -133538594 - MLT1I LTR MaLR 0 409 346 508 292 14 14 chr9 8733141 8733285 -133538159 - MLT1I LTR MaLR -207 202 59 1952 309 16 48 chr9 8734156 8734903 -133536541 + L1PA15 LINE L1 1 723 -6064 14158 223 23 15 chr9 8735018 8737523 -133533921 + L1PA15 LINE L1 1324 3809 -3007 2445 123 13 11 chr9 8737523 8737897 -133533547 + THE1C LTR MaLR 1 375 0 14158 223 23 15 chr9 8737897 8740844 -133530600 + L1PA15 LINE L1 3809 6815 -1 216 86 0 0 chr9 8741986 8742021 -133529423 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 8742090 8742111 -133529333 + AT_rich Low_complexity Low_complexity 1 21 0 236 200 0 50 chr9 8742587 8742647 -133528797 + L2 LINE L2 3255 3311 -2 22 56 0 0 chr9 8742981 8743017 -133528427 + AT_rich Low_complexity Low_complexity 1 36 0 264 222 0 0 chr9 8743606 8743678 -133527766 + (TG)n Simple_repeat Simple_repeat 1 72 0 333 0 0 0 chr9 8744198 8744235 -133527209 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 309 230 190 10 chr9 8744372 8744472 -133526972 - L2 LINE L2 -1 3312 3195 2160 136 0 0 chr9 8746235 8746544 -133524900 - AluSc SINE Alu 0 309 1 481 263 112 0 chr9 8746636 8746788 -133524656 - MLT1H1 LTR MaLR 0 555 387 382 297 68 68 chr9 8746806 8747028 -133524416 - MLT1H1 LTR MaLR -273 282 61 504 328 6 22 chr9 8748270 8748450 -133522994 - MIR SINE MIR -32 230 54 1710 229 28 21 chr9 8748490 8748923 -133522521 - L1ME1 LINE L1 -9 6157 5722 2569 67 0 0 chr9 8749143 8749443 -133522001 - AluY SINE Alu -11 300 1 180 265 61 0 chr9 8749467 8749516 -133521928 + L2 LINE L2 3221 3272 0 382 343 6 17 chr9 8750080 8750260 -133521184 + MIR SINE MIR 30 206 -41 2429 81 7 3 chr9 8751264 8751573 -133519871 + AluY SINE Alu 1 310 -1 297 128 0 0 chr9 8755896 8755943 -133515501 + (A)n Simple_repeat Simple_repeat 1 47 0 497 173 0 10 chr9 8756050 8756154 -133515290 + CT-rich Low_complexity Low_complexity 2 104 0 446 311 28 17 chr9 8756550 8756730 -133514714 + MIR SINE MIR 81 262 0 188 346 90 32 chr9 8756860 8757239 -133514205 + L2 LINE L2 2670 3071 -201 523 255 50 32 chr9 8757775 8757973 -133513471 - MIR SINE MIR -42 220 18 352 234 117 7 chr9 8758125 8758270 -133513174 - L1ME4a LINE L1 0 6121 5961 836 84 0 0 chr9 8758311 8758418 -133513026 - AluY SINE Alu -6 305 199 23 33 0 0 chr9 8758650 8758680 -133512764 + AT_rich Low_complexity Low_complexity 1 30 0 1019 247 17 0 chr9 8759172 8759411 -133512033 + MIR SINE MIR 20 262 0 3523 251 53 23 chr9 8759525 8759868 -133511576 - L1MDb LINE L1 -2295 3785 3454 2090 134 0 0 chr9 8759868 8760158 -133511286 + AluSx SINE Alu 3 292 -20 3523 251 53 23 chr9 8760158 8761403 -133510041 - L1MDb LINE L1 -2626 3454 463 274 279 101 16 chr9 8761526 8761655 -133509789 - L1MDb LINE L1 -5664 406 267 333 296 63 0 chr9 8761836 8762017 -133509427 - L1ME LINE L1 -5384 686 515 1003 167 19 0 chr9 8763790 8763952 -133507492 - AluJb SINE Alu -15 297 133 430 335 70 44 chr9 8765133 8765476 -133505968 + MLT1J2 LTR MaLR 99 450 0 289 283 10 10 chr9 8765878 8765905 -133505539 + L3 LINE CR1 647 673 -904 2543 196 21 44 chr9 8765905 8766472 -133504972 - MLT2B3 LTR ERVL 0 554 1 289 283 10 10 chr9 8766472 8766543 -133504901 + L3 LINE CR1 672 745 -832 2043 118 48 3 chr9 8766899 8767188 -133504256 - AluSc SINE Alu -7 302 1 207 139 23 23 chr9 8767347 8767390 -133504054 + A-rich Low_complexity Low_complexity 2 44 0 229 373 117 12 chr9 8767677 8767924 -133503520 + L3 LINE CR1 1251 1523 -54 1860 191 0 20 chr9 8767941 8768291 -133503153 + MLT1A1 LTR MaLR 21 363 -2 222 217 29 43 chr9 8768410 8768479 -133502965 + CT-rich Low_complexity Low_complexity 4 71 0 337 393 17 6 chr9 8768479 8768657 -133502787 - L2 LINE L2 -1 3312 3133 629 281 65 5 chr9 8769452 8769680 -133501764 + MIR SINE MIR 5 246 -16 180 158 40 13 chr9 8771412 8771488 -133499956 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 251 181 36 24 chr9 8771505 8771671 -133499773 + (TCTCTG)n Simple_repeat Simple_repeat 4 171 0 435 156 21 54 chr9 8771688 8771874 -133499570 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 1079 145 0 12 chr9 8772340 8772512 -133498932 - AluSp SINE Alu -10 303 134 2420 95 0 3 chr9 8772512 8772816 -133498628 - AluY SINE Alu -8 303 1 258 292 0 0 chr9 8773736 8773808 -133497636 + MER5A DNA MER1_type 4 75 -114 232 277 9 9 chr9 8773892 8774004 -133497440 + (CA)n Simple_repeat Simple_repeat 2 113 0 1421 189 0 26 chr9 8774321 8774611 -133496833 + AluJo SINE Alu 25 307 0 251 313 157 7 chr9 8774791 8774938 -133496506 - MIR SINE MIR -71 191 23 2510 107 8 8 chr9 8776524 8776897 -133494547 - THE1C LTR MaLR 0 375 3 247 286 36 0 chr9 8778139 8778223 -133493221 + MIR SINE MIR 52 138 -70 238 216 98 49 chr9 8778809 8778911 -133492533 - LTR16C LTR ERVL 0 491 385 208 195 0 46 chr9 8779603 8779690 -133491754 + (CACCC)n Simple_repeat Simple_repeat 3 85 0 2200 122 0 10 chr9 8780785 8781089 -133490355 - AluSx SINE Alu -10 302 2 1352 263 54 28 chr9 8781646 8782107 -133489337 - MLT1E2 LTR MaLR -7 619 147 375 278 57 41 chr9 8786469 8786663 -133484781 - MER58A DNA MER1_type -2 222 26 1144 175 60 19 chr9 8786728 8786997 -133484447 - THE1C LTR MaLR 0 375 96 602 224 76 59 chr9 8788356 8788593 -133482851 + MIR SINE MIR 8 248 -14 360 246 129 23 chr9 8788614 8788834 -133482610 + MLT1K LTR MaLR 360 613 -2 1998 59 0 0 chr9 8789203 8789459 -133481985 - L1PA5 LINE L1 -1 6153 5898 185 189 0 0 chr9 8790172 8790209 -133481235 - L2 LINE L2 -23 3249 3213 245 279 58 0 chr9 8790210 8790314 -133481130 - MIR SINE MIR -124 138 29 216 184 0 0 chr9 8791003 8791041 -133480403 + (CA)n Simple_repeat Simple_repeat 1 38 0 282 243 0 0 chr9 8791173 8791247 -133480197 + G-rich Low_complexity Low_complexity 1 74 0 633 276 92 0 chr9 8793591 8793830 -133477614 - Charlie5 DNA MER1_type 0 2624 2364 256 288 14 0 chr9 8793817 8793890 -133477554 - Charlie5 DNA MER1_type -2536 76 3 * 215 286 83 7 chr9 8794416 8794510 -133476934 + MIR SINE MIR 45 144 -64 564 214 17 0 chr9 8794718 8794891 -133476553 + CT-rich Low_complexity Low_complexity 1 176 0 1480 94 44 5 chr9 8795777 8795980 -133475464 + AluSg/x SINE Alu 85 295 -17 259 301 54 0 chr9 8796726 8796819 -133474625 + MIR3 SINE MIR 92 189 -19 298 224 0 0 chr9 8796952 8797010 -133474434 + L2 LINE L2 3215 3272 0 1696 149 55 3 chr9 8797080 8797369 -133474075 - AluSx SINE Alu -8 304 1 421 345 40 0 chr9 8798312 8798486 -133472958 + MIR SINE MIR 50 230 -32 1165 252 55 3 chr9 8799081 8799406 -133472038 + MER7A DNA MER2_type 1 340 -6 298 283 11 22 chr9 8799792 8799884 -133471560 + MIR SINE MIR 87 177 -85 188 333 0 0 chr9 8799940 8799988 -133471456 - MIR SINE MIR -106 156 109 233 209 75 0 chr9 8801065 8801132 -133470312 - MLT1J LTR MaLR -341 170 99 181 296 28 14 chr9 8802913 8802984 -133468460 + L2 LINE L2 2994 3065 -248 2352 60 0 0 chr9 8803218 8803529 -133467915 - AluY SINE Alu 0 311 1 817 164 0 29 chr9 8803529 8803669 -133467775 - AluJo SINE Alu -176 136 1 1912 97 0 0 chr9 8803718 8803965 -133467479 - AluSx SINE Alu -19 293 47 186 200 20 20 chr9 8804593 8804643 -133466801 - MIR SINE MIR -57 151 102 390 303 70 32 chr9 8805043 8805228 -133466216 + MIR SINE MIR 41 232 -30 401 330 62 17 chr9 8805494 8805785 -133465659 - L1MEc LINE L1 -6028 368 65 627 253 220 10 chr9 8807652 8808011 -133463433 - MLT1C LTR MaLR -47 420 1 194 126 11 69 chr9 8808720 8808807 -133462637 + (GGA)n Simple_repeat Simple_repeat 2 83 0 351 297 109 0 chr9 8810989 8811127 -133460317 - MIR SINE MIR -19 243 91 23 0 0 0 chr9 8812822 8812845 -133458599 + GC_rich Low_complexity Low_complexity 1 23 0 326 251 115 20 chr9 8814357 8814475 -133456969 + MIR SINE MIR 33 162 -46 2122 78 58 3 chr9 8814629 8814924 -133456520 - AluY SINE Alu 0 311 1 2299 258 92 8 chr9 8815815 8816567 -133454877 - MER21B LTR ERV1 0 863 49 276 294 0 0 chr9 8816578 8816646 -133454798 - MER21B LTR ERV1 -777 86 19 285 244 37 0 chr9 8816759 8816841 -133454603 + MLT1E2 LTR MaLR 124 208 -418 248 259 0 0 chr9 8817163 8817221 -133454223 + MARNA DNA Mariner 436 493 -93 1883 184 47 19 chr9 8818264 8818629 -133452815 + THE1C LTR MaLR 1 375 0 1274 193 28 0 chr9 8820040 8820252 -133451192 + MER20 DNA MER1_type 1 218 -1 22 0 0 0 chr9 8821420 8821442 -133450002 + GC_rich Low_complexity Low_complexity 1 22 0 392 330 84 0 chr9 8822125 8822304 -133449140 + MIR SINE MIR 43 236 -26 279 363 9 9 chr9 8823020 8823133 -133448311 + L3 LINE CR1 1417 1529 -48 495 244 154 5 chr9 8823160 8823361 -133448083 + MER113 DNA MER1_type? 61 291 -230 206 295 33 0 chr9 8825487 8825548 -133445896 - MER91B DNA MER1_type -127 63 1 569 209 157 5 chr9 8825555 8825765 -133445679 - MLT1D LTR MaLR -157 348 107 372 277 108 19 chr9 8826553 8826766 -133444678 - LTR16A LTR ERVL -17 433 202 255 168 76 0 chr9 8826840 8826959 -133444485 + (CAGGA)n Simple_repeat Simple_repeat 3 130 0 242 272 48 24 chr9 8826959 8827084 -133444360 + (CGGGA)n Simple_repeat Simple_repeat 3 130 0 1732 231 86 25 chr9 8830488 8830978 -133440466 - MLT2B1 LTR ERVL 0 520 1 2659 104 8 29 chr9 8831550 8831933 -133439511 + THE1C LTR MaLR 1 375 0 441 104 42 52 chr9 8833668 8833764 -133437680 - L1MA8 LINE L1 -1 6290 6196 234 245 28 56 chr9 8837570 8837713 -133433731 + GA-rich Low_complexity Low_complexity 3 141 0 203 222 0 37 chr9 8839837 8839891 -133431553 - MIR SINE MIR -64 144 93 201 244 0 0 chr9 8840066 8840111 -133431333 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 193 260 188 0 chr9 8840641 8840737 -133430707 - MIR SINE MIR -128 134 21 234 188 14 110 chr9 8841122 8841209 -133430235 - MIR SINE MIR -61 147 86 3165 142 45 215 chr9 8845793 8847158 -133424286 + L1 LINE L1 3240 4372 -1774 2049 122 7 0 chr9 8847159 8847453 -133423991 + AluSq SINE Alu 1 296 -17 404 259 29 43 chr9 8847457 8847596 -133423848 - L2 LINE L2 -256 3057 2921 5156 284 40 19 chr9 8847721 8849820 -133421624 - L1P LINE L1 -2537 3609 1466 261 247 53 94 chr9 8850422 8850592 -133420852 + LTR67 LTR ERVL 381 543 -14 214 239 15 15 chr9 8850698 8850765 -133420679 + (TA)n Simple_repeat Simple_repeat 2 68 0 204 179 0 0 chr9 8850882 8850921 -133420523 + T-rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr9 8851407 8851432 -133420012 + AT_rich Low_complexity Low_complexity 1 25 0 379 256 175 0 chr9 8851650 8851787 -133419657 - MIR SINE MIR -2 260 100 220 158 26 0 chr9 8852520 8852558 -133418886 + L2 LINE L2 3264 3302 -11 906 231 54 0 chr9 8855032 8855218 -133416226 + Tigger7 DNA MER2_type 7 202 -503 713 278 27 0 chr9 8855433 8855656 -133415788 + Tigger7 DNA MER2_type 191 419 -2068 667 149 90 70 chr9 8856415 8856616 -133414828 - MLT1C LTR MaLR -231 236 32 252 258 0 0 chr9 8857547 8857609 -133413835 - MER2 DNA MER2_type -1 344 283 241 290 0 0 chr9 8857585 8857654 -133413790 - MER8 DNA MER2_type -60 179 111 * 425 242 121 0 chr9 8857767 8857916 -133413528 + MLT1F1 LTR MaLR 1 167 -223 476 264 142 44 chr9 8858746 8859041 -133412403 + MLT1F1 LTR MaLR 244 567 0 672 198 20 10 chr9 8859429 8859600 -133411844 - MLT1A1 LTR MaLR -175 190 15 288 207 198 0 chr9 8859921 8860032 -133411412 + MLT1K LTR MaLR 431 563 -25 729 262 72 20 chr9 8861162 8861639 -133409805 - MER77 LTR ERV1 -4 601 58 247 176 0 39 chr9 8863380 8863431 -133408013 - L2 LINE L2 -5 3267 3219 2325 241 49 29 chr9 8864438 8864570 -133406874 + MER67C LTR ERV1 1 129 -581 2074 96 13 3 chr9 8864570 8864872 -133406572 - AluSc SINE Alu -4 305 1 2325 241 49 29 chr9 8864872 8865435 -133406009 + MER67C LTR ERV1 129 710 0 2020 101 3 3 chr9 8866041 8866327 -133405117 + AluSg1 SINE Alu 1 286 -23 2179 101 53 71 chr9 8866506 8866725 -133404719 + MER51A LTR ERV1 1 222 -412 238 67 44 0 chr9 8866725 8866770 -133404674 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1974 125 0 20 chr9 8866773 8867077 -133404367 - AluSx SINE Alu -14 298 1 2179 101 53 71 chr9 8867077 8867403 -133404041 + MER51A LTR ERV1 224 634 0 2400 234 51 43 chr9 8867794 8868546 -133402898 - L1M4 LINE L1 -1778 4368 3608 1226 171 98 29 chr9 8868546 8868821 -133402623 - AluJb SINE Alu -18 294 1 2400 234 51 43 chr9 8868821 8868832 -133402612 - L1M4 LINE L1 -2538 3608 3599 723 244 80 20 chr9 8868827 8869028 -133402416 - L1MD2 LINE L1 -16 6343 6131 * 266 197 237 0 chr9 8869270 8869346 -133402098 - L1MD2 LINE L1 -543 5699 5606 480 239 22 29 chr9 8869401 8869539 -133401905 - L1M4 LINE L1 -2595 3551 3415 237 300 51 74 chr9 8869774 8870031 -133401413 + MLT1-int LTR MaLR 1114 1364 -7 6076 18 0 0 chr9 8870237 8870914 -133400530 - L1PA3 LINE L1 -16 6139 5463 * 7326 36 18 0 chr9 8870911 8871894 -133399550 + L1PA4 LINE L1 5149 6147 -8 2192 67 7 24 chr9 8872034 8872332 -133399112 + AluY SINE Alu 1 293 -18 201 74 0 0 chr9 8872396 8872423 -133399021 + (TA)n Simple_repeat Simple_repeat 2 28 0 271 279 52 22 chr9 8872499 8872635 -133398809 - L1MC/D LINE L1 -1928 5880 5741 5588 72 3 0 chr9 8872791 8873499 -133397945 - L1PA7 LINE L1 -3 6151 5442 5205 156 41 1 chr9 8874202 8875203 -133396241 - L1PA16 LINE L1 -9 6157 5116 180 0 0 0 chr9 8875405 8875425 -133396019 + (T)n Simple_repeat Simple_repeat 1 20 0 380 326 116 31 chr9 8876585 8876843 -133394601 - L2 LINE L2 -3 3310 3031 426 262 121 7 chr9 8878232 8878373 -133393071 + MER5A DNA MER1_type 33 189 0 1905 135 0 3 chr9 8878871 8879160 -133392284 - AluJb SINE Alu -16 296 9 236 375 22 52 chr9 8881143 8881279 -133390165 + MIR SINE MIR 19 150 -58 204 326 102 0 chr9 8881476 8881574 -133389870 + MIR SINE MIR 152 259 -3 1807 77 151 4 chr9 8883068 8883327 -133388117 - AluY SINE Alu -3 298 2 344 257 38 0 chr9 8883643 8883748 -133387696 + MER103 DNA DNA 1 109 -57 23 0 0 0 chr9 8885221 8885244 -133386200 + AT_rich Low_complexity Low_complexity 1 23 0 295 284 40 14 chr9 8887364 8887438 -133384006 + MIR SINE MIR 32 107 -155 235 311 66 25 chr9 8888080 8888202 -133383242 - L2 LINE L2 0 3313 3187 712 316 112 54 chr9 8889492 8890453 -133380991 + L2 LINE L2 2297 3313 0 1905 149 0 10 chr9 8891015 8891323 -133380121 - AluSx SINE Alu -3 309 5 24 0 0 0 chr9 8891537 8891561 -133379883 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr9 8891870 8891901 -133379543 + AT_rich Low_complexity Low_complexity 1 31 0 1578 189 70 83 chr9 8892292 8892774 -133378670 - LTR8 LTR ERV1 -215 476 1 2000 111 10 0 chr9 8892860 8893157 -133378287 - AluSq SINE Alu -12 301 2 1012 149 28 11 chr9 8894158 8894339 -133377105 + MER5A DNA MER1_type 6 189 0 498 147 138 0 chr9 8894394 8894503 -133376941 + MER53 DNA DNA 3 126 -63 1866 153 73 14 chr9 8896402 8896756 -133374688 + THE1C LTR MaLR 1 375 0 219 277 117 51 chr9 8897469 8897606 -133373838 + L2 LINE L2 3166 3311 -2 872 359 87 11 chr9 8898354 8898883 -133372561 - MLT1K LTR MaLR -3 585 17 180 378 14 0 chr9 8898953 8899027 -133372417 - L2 LINE L2 -218 3054 2980 395 330 16 68 chr9 8899125 8899316 -133372128 + MER5A DNA MER1_type 7 187 -2 342 275 0 0 chr9 8899372 8899452 -133371992 - L2 LINE L2 0 3313 3234 616 174 232 7 chr9 8899478 8899616 -133371828 - MER45A DNA AcHobo -9 169 1 890 170 105 0 chr9 8899880 8900051 -133371393 + MER5A DNA MER1_type 1 189 0 4993 116 26 8 chr9 8900932 8902241 -133369203 + L1PA14 LINE L1 4781 6158 -3 348 212 68 25 chr9 8903050 8903168 -133368276 - MLT1K LTR MaLR -47 541 419 243 218 0 0 chr9 8903216 8903271 -133368173 - MLT1K LTR MaLR -158 430 376 2117 139 0 3 chr9 8903528 8903831 -133367613 - AluSx SINE Alu -10 302 1 327 49 0 0 chr9 8904246 8904287 -133367157 + (CA)n Simple_repeat Simple_repeat 2 42 0 33 80 0 0 chr9 8905136 8905211 -133366233 + AT_rich Low_complexity Low_complexity 1 75 0 184 283 43 0 chr9 8905420 8905466 -133365978 + L2 LINE L2 1835 1882 -1432 214 241 60 60 chr9 8906360 8906443 -133365001 - MIR SINE MIR -56 206 124 1574 162 19 4 chr9 8906449 8906715 -133364729 + MLT1A1 LTR MaLR 1 270 -95 3552 266 44 20 chr9 8906830 8908247 -133363197 + L1M4 LINE L1 3213 4663 -1483 1231 179 70 5 chr9 8909263 8909526 -133361918 - L1MD2 LINE L1 -21 7752 6172 227 176 0 0 chr9 8909529 8909563 -133361881 + Charlie3 DNA MER1_type 1 34 -2676 4297 168 29 20 chr9 8909728 8910076 -133361368 - L1MB5 LINE L1 0 6174 5830 1860 150 0 32 chr9 8910076 8910390 -133361054 - AluJb SINE Alu -8 304 1 4297 168 29 20 chr9 8910390 8910883 -133360561 - L1MB5 LINE L1 -344 5830 5326 1721 168 31 17 chr9 8910896 8911188 -133360256 - AluJb SINE Alu -16 296 1 1857 167 0 16 chr9 8911194 8911506 -133359938 - AluJo SINE Alu -5 307 1 1636 196 28 0 chr9 8911511 8911797 -133359647 - AluJb SINE Alu -18 294 1 230 170 0 0 chr9 8911804 8911851 -133359593 - L1MB5 LINE L1 -834 5328 5282 909 236 41 20 chr9 8911854 8912197 -133359247 - L1M4c LINE L1 -4071 2313 1964 2463 111 17 37 chr9 8912381 8912785 -133358659 - HERVK9 LTR ERVK -5520 396 1 3370 125 2 6 chr9 8912785 8913282 -133358162 - MER9 LTR ERVK 0 511 17 8024 157 18 8 chr9 8913439 8914824 -133356620 + Tigger1 DNA MER2_type 1 1399 -1019 2049 92 4 0 chr9 8914926 8915186 -133356258 - AluSq SINE Alu -50 263 3 303 167 24 60 chr9 8915538 8915622 -133355822 - L1M4 LINE L1 -3170 2976 2896 6462 26 3 0 chr9 8915731 8916491 -133354953 + L1PA2 LINE L1 5391 6152 -3 280 179 155 12 chr9 8917091 8917175 -133354269 - MER33 DNA MER1_type -224 100 5 200 309 49 81 chr9 8918209 8918332 -133353112 + L2 LINE L2 3187 3305 -8 412 330 59 39 chr9 8919803 8920006 -133351438 - MIR SINE MIR -7 255 49 573 320 64 27 chr9 8920371 8920788 -133350656 + L1ME3A LINE L1 5268 5689 -520 204 204 37 0 chr9 8920789 8920843 -133350601 + (TA)n Simple_repeat Simple_repeat 2 57 0 310 374 36 12 chr9 8920919 8921085 -133350359 + L1ME3A LINE L1 5728 5897 -273 207 365 81 0 chr9 8921526 8921600 -133349844 - L2 LINE L2 -223 3049 2970 301 302 63 32 chr9 8921830 8921956 -133349488 - MLT1J LTR MaLR 0 511 382 1523 237 91 24 chr9 8921962 8922419 -133349025 + MLT2B1 LTR ERVL 1 534 -20 224 182 0 18 chr9 8922425 8922480 -133348964 + CT-rich Low_complexity Low_complexity 1 54 0 221 147 0 0 chr9 8922481 8922515 -133348929 + (TC)n Simple_repeat Simple_repeat 2 35 0 388 318 95 34 chr9 8922536 8922800 -133348644 - MLT1J LTR MaLR -226 285 6 2243 259 10 19 chr9 8923728 8924242 -133347202 - MLT1F LTR MaLR -6 536 28 2562 177 18 11 chr9 8924592 8925032 -133346412 + L1PA13 LINE L1 2 444 -6343 368 95 16 32 chr9 8925132 8925195 -133346249 - MER30 DNA MER1_type -162 68 7 3993 118 3 0 chr9 8925201 8925779 -133345665 + Tigger1 DNA MER2_type 1461 2040 -378 288 243 0 0 chr9 8926668 8926742 -133344702 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 268 338 110 15 chr9 8926898 8927034 -133344410 - MIR SINE MIR -109 153 5 380 145 0 0 chr9 8927358 8927420 -133344024 + MSTB1 LTR MaLR 344 405 -27 22 0 0 0 chr9 8929944 8929966 -133341478 + AT_rich Low_complexity Low_complexity 1 22 0 6071 55 3 10 chr9 8930070 8930899 -133340545 + L1P3 LINE L1 2 953 -5193 471 281 99 18 chr9 8930999 8931170 -133340274 - L2 LINE L2 -40 3273 3089 863 183 91 6 chr9 8931172 8931347 -133340097 + MER58A DNA MER1_type 25 214 -10 483 273 107 0 chr9 8931356 8931506 -133339938 - L2 LINE L2 -504 2810 2645 1297 86 15 40 chr9 8931506 8931704 -133339740 - MER30 DNA MER1_type -37 193 1 840 321 11 4 chr9 8931824 8932101 -133339343 - L2 LINE L2 -861 2453 2175 216 0 0 0 chr9 8932103 8932127 -133339317 + (T)n Simple_repeat Simple_repeat 1 24 0 189 216 0 0 chr9 8932428 8932465 -133338979 - MIR SINE MIR -3 259 223 5561 65 39 0 chr9 8932810 8933547 -133337897 + L1PA7 LINE L1 5386 6151 -3 265 276 52 22 chr9 8933703 8933837 -133337607 + L1MC/D LINE L1 5741 5878 -1930 201 74 0 0 chr9 8933915 8933942 -133337502 + (TA)n Simple_repeat Simple_repeat 2 28 0 1866 62 8 29 chr9 8934006 8934250 -133337194 - AluY SINE Alu -18 293 55 7073 181 13 21 chr9 8934350 8936546 -133334898 + L1PA13 LINE L1 3944 6145 -18 779 251 0 26 chr9 8936583 8936774 -133334670 + AluJb SINE Alu 127 312 0 645 274 88 18 chr9 8937061 8937401 -133334043 + L1ME3A LINE L1 4037 4400 -1746 1100 278 168 10 chr9 8937411 8937994 -133333450 + L1ME3A LINE L1 4573 5247 -899 2305 246 71 24 chr9 8938067 8938621 -133332823 + L1ME3A LINE L1 5274 5883 -287 782 230 99 5 chr9 8938621 8938812 -133332632 - MER63A DNA MER1_type -1 209 1 2305 246 71 24 chr9 8938812 8939106 -133332338 + L1ME3A LINE L1 5883 6162 -8 905 191 12 0 chr9 8939161 8939323 -133332121 - MER58B DNA MER1_type -5 336 173 240 289 45 58 chr9 8939392 8939548 -133331896 - MIR3 SINE MIR -25 183 30 592 191 0 116 chr9 8939716 8939830 -133331614 + L1MA9 LINE L1 6105 6189 -123 2231 90 0 0 chr9 8939830 8940144 -133331300 - AluSc SINE Alu 0 316 3 592 191 0 116 chr9 8940144 8940227 -133331217 + L1MA9 LINE L1 6189 6280 -32 23 54 0 0 chr9 8940530 8940567 -133330877 + AT_rich Low_complexity Low_complexity 1 37 0 3382 133 57 25 chr9 8941398 8942031 -133329413 - MER39B LTR ERV1 0 653 1 583 76 0 0 chr9 8942509 8942639 -133328805 - AluSg/x SINE Alu 0 333 204 268 250 0 0 chr9 8943571 8943631 -133327813 + Charlie8 DNA MER1_type 2357 2416 -1 1879 181 25 27 chr9 8943967 8944375 -133327069 - L1MA10 LINE L1 -13 6321 5915 1483 312 57 40 chr9 8944543 8945249 -133326195 - L3 LINE CR1 -99 1478 761 641 313 96 24 chr9 8945324 8945742 -133325702 + MLT1H LTR MaLR 102 549 0 366 350 87 15 chr9 8946600 8946806 -133324638 + MIR SINE MIR 1 221 -41 265 267 120 0 chr9 8946926 8947001 -133324443 - MLT1J LTR MaLR -142 369 286 974 247 126 40 chr9 8947308 8947985 -133323459 - L1MEc LINE L1 -4813 1583 849 1333 275 61 7 chr9 8948003 8948446 -133322998 - L1MEc LINE L1 -5640 756 290 187 336 101 40 chr9 8948446 8948595 -133322849 - MER5A DNA MER1_type -16 173 16 208 352 66 9 chr9 8948786 8948979 -133322465 + MIR SINE MIR 18 221 -41 387 324 101 26 chr9 8949072 8949378 -133322066 - HAL1 LINE L1 -1353 1154 826 780 179 0 22 chr9 8949678 8949862 -133321582 + CT-rich Low_complexity Low_complexity 1 180 0 1909 161 0 13 chr9 8950362 8950667 -133320777 + AluJb SINE Alu 3 303 -9 243 204 0 0 chr9 8950991 8951045 -133320399 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 2851 12 0 6 chr9 8951470 8951790 -133319654 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr9 8953224 8953246 -133318198 + AT_rich Low_complexity Low_complexity 1 22 0 511 163 273 5 chr9 8954213 8954332 -133317112 + MSTA LTR MaLR 1 151 -241 400 357 78 0 chr9 8955149 8955303 -133316141 - L2 LINE L2 -1 3271 3106 518 243 41 18 chr9 8955425 8955857 -133315587 + LTR33 LTR ERVL 3 521 0 228 195 0 0 chr9 8956082 8956123 -133315321 + MER34 LTR ERV1 6 46 -496 1491 187 127 19 chr9 8956181 8956550 -133314894 + MER39 LTR ERV1 290 698 -9 1938 227 38 47 chr9 8956593 8957169 -133314275 + MLT1E3 LTR MaLR 4 574 -50 1092 173 25 0 chr9 8957454 8957651 -133313793 + MER3 DNA MER1_type 3 204 -5 3109 131 15 27 chr9 8957750 8958157 -133313287 - L1PA16 LINE L1 0 6166 5766 180 0 0 0 chr9 8958157 8958177 -133313267 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 3109 131 15 27 chr9 8958177 8958318 -133313126 - L1PA16 LINE L1 -400 5766 5625 22 0 0 0 chr9 8958353 8958375 -133313069 + AT_rich Low_complexity Low_complexity 1 22 0 211 350 114 24 chr9 8958585 8958708 -133312736 + MIR3 SINE MIR 13 146 -62 22 35 0 0 chr9 8958923 8958952 -133312492 + AT_rich Low_complexity Low_complexity 1 29 0 333 0 0 0 chr9 8959683 8959720 -133311724 + (TC)n Simple_repeat Simple_repeat 2 38 0 346 232 61 0 chr9 8959732 8959814 -133311630 - L1MC4 LINE L1 -1339 6703 6617 999 228 97 28 chr9 8960629 8961102 -133310342 + Charlie4a DNA MER1_type 3 508 0 407 312 153 27 chr9 8961360 8961732 -133309712 - MLT1L LTR MaLR -54 561 143 355 365 76 25 chr9 8962972 8963249 -133308195 + L2 LINE L2 2977 3267 -5 288 169 15 0 chr9 8966829 8966894 -133304550 + MADE1 DNA Mariner 14 79 -1 823 51 0 0 chr9 8967290 8967388 -133304056 + L1PA4 LINE L1 1 98 -6048 * 38668 40 6 0 chr9 8967386 8972893 -133298551 + L1PA4 LINE L1 623 6161 0 875 173 21 37 chr9 8974003 8974194 -133297250 + MER5A DNA MER1_type 2 189 0 262 306 86 27 chr9 8974551 8974773 -133296671 - L1MC4 LINE L1 -1960 5848 5614 566 186 9 9 chr9 8974786 8974899 -133296545 + MER74A LTR ERVL 1 113 -445 1959 219 16 26 chr9 8974950 8975375 -133296069 + MER74B LTR ERVL 176 596 -26 326 208 78 0 chr9 8975605 8975682 -133295762 + L1MC4 LINE L1 6621 6703 -1339 333 0 0 0 chr9 8975694 8975731 -133295713 + (GA)n Simple_repeat Simple_repeat 2 38 0 2728 231 44 5 chr9 8976414 8977167 -133294277 + L1ME1 LINE L1 3981 4762 -1384 2006 129 0 0 chr9 8977820 8978099 -133293345 + AluSx SINE Alu 1 279 -33 249 108 0 0 chr9 8978099 8978136 -133293308 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 837 271 48 36 chr9 8978547 8978798 -133292646 + MIR SINE MIR 8 261 -1 2355 192 48 43 chr9 8978850 8979635 -133291809 + L1ME1 LINE L1 4801 5623 -543 444 213 0 0 chr9 8979635 8979715 -133291729 + AluJ/FLAM SINE Alu 5 84 -228 2355 192 48 43 chr9 8979715 8979965 -133291479 + L1ME1 LINE L1 5623 5870 -296 3934 172 18 1 chr9 8979967 8981129 -133290315 - L1M2 LINE L1 -490 5822 4647 193 329 96 0 chr9 8981154 8981227 -133290217 - MIR SINE MIR -109 153 74 191 388 36 24 chr9 8981589 8981754 -133289690 + L2 LINE L2 2887 3053 -219 383 324 71 24 chr9 8983365 8983535 -133287909 + MER5B DNA MER1_type 1 178 0 231 94 0 0 chr9 8984019 8984051 -133287393 - L2 LINE L2 -259 3054 3023 193 303 0 15 chr9 8984063 8984129 -133287315 + L2 LINE L2 3249 3313 0 227 299 55 24 chr9 8984235 8984362 -133287082 - L2 LINE L2 -481 2833 2703 989 249 155 22 chr9 8984409 8984855 -133286589 - L2 LINE L2 -590 2724 2220 207 241 12 60 chr9 8984901 8984984 -133286460 + CT-rich Low_complexity Low_complexity 5 83 0 252 203 34 17 chr9 8985102 8985161 -133286283 + MIR SINE MIR 82 141 -67 2261 221 21 0 chr9 8985439 8985906 -133285538 + LTR53 LTR ERVL 1 477 -42 1828 125 3 42 chr9 8985921 8986208 -133285236 + AluSq SINE Alu 1 276 -37 693 194 17 6 chr9 8986210 8986385 -133285059 + GA-rich Low_complexity Low_complexity 3 179 0 2263 85 0 10 chr9 8986426 8986720 -133284724 - AluY SINE Alu -20 291 1 2133 112 3 38 chr9 8986720 8987034 -133284410 - AluSx SINE Alu -1 311 9 459 313 107 21 chr9 8987038 8987271 -133284173 + MLT1I LTR MaLR 150 402 -7 769 180 97 44 chr9 8987530 8987736 -133283708 - MER20 DNA MER1_type -2 217 1 2078 104 42 0 chr9 8988543 8988830 -133282614 + AluY SINE Alu 1 299 -12 24 0 0 0 chr9 8990527 8990551 -133280893 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 0 45 chr9 8990682 8990748 -133280696 + L2 LINE L2 3249 3311 -2 412 240 50 0 chr9 8991767 8991867 -133279577 - L2 LINE L2 -4 3309 3205 * 1545 278 42 24 chr9 8991865 8992362 -133279082 - L2 LINE L2 -500 2814 2309 293 327 137 29 chr9 8992386 8992664 -133278780 - L2 LINE L2 -1 3312 3005 1487 127 27 0 chr9 8992695 8992916 -133278528 + MER30 DNA MER1_type 4 230 0 269 121 52 0 chr9 8993942 8994000 -133277444 + HSMAR1 DNA Mariner 1227 1287 0 319 261 8 75 chr9 8996027 8996161 -133275283 + MIR SINE MIR 88 212 -50 296 244 9 61 chr9 8997110 8997225 -133274219 + MLT1L LTR MaLR 387 495 -120 230 340 29 10 chr9 8997302 8997405 -133274039 + L2 LINE L2 3181 3285 -28 189 0 0 0 chr9 8997601 8997622 -133273822 + (T)n Simple_repeat Simple_repeat 1 21 0 282 250 100 0 chr9 8998683 8998783 -133272661 - L1ME LINE L1 -381 5740 5631 2250 121 36 33 chr9 8999841 9000204 -133271240 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr9 9002222 9002254 -133269190 + AT_rich Low_complexity Low_complexity 1 32 0 533 309 104 17 chr9 9002397 9002627 -133268817 + MIR SINE MIR 12 261 -1 314 315 35 35 chr9 9002949 9003092 -133268352 + MIR3 SINE MIR 41 183 -25 378 0 0 0 chr9 9003767 9003809 -133267635 + (CA)n Simple_repeat Simple_repeat 2 43 0 229 203 31 31 chr9 9003905 9003969 -133267475 + G-rich Low_complexity Low_complexity 1 64 0 791 305 4 21 chr9 9004496 9004735 -133266709 - MIR SINE MIR -25 237 3 1218 231 34 0 chr9 9004980 9005274 -133266170 - L1ME1 LINE L1 -6 6160 5857 812 146 22 14 chr9 9005279 9005618 -133265826 + CT-rich Low_complexity Low_complexity 1 341 0 1540 163 22 22 chr9 9005644 9005921 -133265523 - AluJo SINE Alu -3 309 33 1367 185 48 0 chr9 9005921 9006191 -133265253 - L1ME1 LINE L1 -307 5859 5577 1243 198 39 61 chr9 9006374 9006784 -133264660 + MER39 LTR ERV1 307 707 0 730 195 12 12 chr9 9006784 9006953 -133264491 - L1ME1 LINE L1 -583 5583 5415 196 293 0 35 chr9 9007492 9007550 -133263894 + MER5A DNA MER1_type 45 100 -89 215 179 0 0 chr9 9007568 9007607 -133263837 + L2 LINE L2 3257 3295 -18 2012 151 0 3 chr9 9007800 9008104 -133263340 + AluSx SINE Alu 1 303 -9 978 70 0 56 chr9 9008106 9008249 -133263195 + AluY SINE Alu 175 309 -2 216 0 0 0 chr9 9008629 9008653 -133262791 + (A)n Simple_repeat Simple_repeat 1 24 0 216 240 133 93 chr9 9009795 9009945 -133261499 + MER5A DNA MER1_type 34 189 0 324 93 19 0 chr9 9010018 9010072 -133261372 - L1PB2 LINE L1 -2 6149 6095 503 265 7 52 chr9 9010075 9010141 -133261303 - L2 LINE L2 -9 3263 3204 1725 208 43 41 chr9 9010141 9010607 -133260837 - MLT1C LTR MaLR 0 467 1 503 265 7 52 chr9 9010607 9010676 -133260768 - L2 LINE L2 -68 3204 3134 211 292 150 0 chr9 9011578 9011691 -133259753 - MIR SINE MIR -5 257 128 23 33 0 0 chr9 9012901 9012931 -133258513 + AT_rich Low_complexity Low_complexity 1 30 0 330 383 6 16 chr9 9013598 9013781 -133257663 + MIR SINE MIR 8 188 -74 459 254 47 41 chr9 9015274 9015332 -133256112 - LTR67 LTR ERVL -293 264 208 1522 105 0 0 chr9 9015332 9015532 -133255912 - AluSg/x SINE Alu -2 308 109 459 254 47 41 chr9 9015532 9015642 -133255802 - LTR67 LTR ERVL -349 208 95 207 0 0 0 chr9 9015657 9015680 -133255764 + (A)n Simple_repeat Simple_repeat 1 23 0 2952 271 105 56 chr9 9015802 9016593 -133254851 + L2 LINE L2 1511 2393 -921 2316 77 10 3 chr9 9016593 9016892 -133254552 + AluSg SINE Alu 1 301 -9 2952 271 105 56 chr9 9016892 9017416 -133254028 + L2 LINE L2 2393 2890 -424 186 194 0 0 chr9 9017634 9017665 -133253779 - L2 LINE L2 -23 3249 3219 2438 91 0 0 chr9 9017998 9018307 -133253137 + AluSc SINE Alu 1 309 0 318 26 0 0 chr9 9018694 9018733 -133252711 + (CA)n Simple_repeat Simple_repeat 2 40 0 224 307 40 0 chr9 9018923 9018998 -133252446 - MIR SINE MIR -14 248 171 323 217 17 104 chr9 9020851 9020966 -133250478 - MIR SINE MIR -108 154 50 1922 128 45 0 chr9 9021216 9021505 -133249939 + AluSg SINE Alu 1 302 -8 428 222 126 29 chr9 9021553 9021760 -133249684 - HAL1 LINE L1 -5 2502 2276 581 290 80 8 chr9 9021836 9022074 -133249370 - L2 LINE L2 0 3313 3059 1929 228 120 86 chr9 9022074 9023392 -133248052 - HAL1 LINE L1 -331 2176 814 2579 52 3 0 chr9 9023774 9024082 -133247362 - AluY SINE Alu -2 309 1 216 200 0 0 chr9 9024335 9024380 -133247064 + (TA)n Simple_repeat Simple_repeat 1 45 0 235 0 0 54 chr9 9026223 9026260 -133245184 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 233 330 28 28 chr9 9027032 9027138 -133244306 + L2 LINE L2 3158 3263 -50 322 282 101 32 chr9 9027476 9027603 -133243841 - MER5B DNA MER1_type -39 150 5 195 329 53 26 chr9 9027893 9027969 -133243475 - MIR SINE MIR -162 100 23 353 330 98 15 chr9 9028774 9028977 -133242467 - MIR SINE MIR -34 228 9 650 255 51 23 chr9 9029542 9029776 -133241668 - MIR SINE MIR -23 239 3 188 35 35 0 chr9 9031442 9031471 -133239973 + (TAA)n Simple_repeat Simple_repeat 1 30 0 279 288 68 38 chr9 9033267 9033399 -133238045 - L2 LINE L2 0 3272 3137 369 299 149 8 chr9 9035096 9035230 -133236214 - MER5A DNA MER1_type -6 183 31 380 226 66 9 chr9 9036209 9036315 -133235129 + MER117 DNA MER1_type 7 118 -79 306 270 45 0 chr9 9036503 9036592 -133234852 - L2 LINE L2 0 3313 3221 8416 213 39 25 chr9 9037763 9039554 -133231890 - L1MC1 LINE L1 0 6333 4569 2480 62 0 0 chr9 9039554 9039869 -133231575 + AluSc SINE Alu 1 315 0 8416 213 39 25 chr9 9039869 9041888 -133229556 - L1MC1 LINE L1 -1764 4569 2460 1948 166 77 0 chr9 9042294 9042632 -133228812 - THE1B LTR MaLR 0 364 1 11498 103 5 2 chr9 9042632 9044207 -133227237 - THE1B-int LTR MaLR 0 1580 1 2065 108 108 15 chr9 9044207 9044540 -133226904 - THE1B LTR MaLR 0 364 1 281 294 49 10 chr9 9044833 9044935 -133226509 - MIR SINE MIR -94 168 63 820 230 8 6 chr9 9045090 9045314 -133226130 - L1PA16 LINE L1 -5 6146 5921 475 287 84 0 chr9 9045754 9045897 -133225547 + MIR SINE MIR 89 243 -19 288 274 168 9 chr9 9045906 9046019 -133225425 - MER94 DNA DNA -1 133 3 589 316 92 5 chr9 9047064 9047270 -133224174 + MIR SINE MIR 29 252 -10 497 309 48 30 chr9 9047522 9047687 -133223757 - MIR SINE MIR -77 185 18 325 375 8 0 chr9 9048039 9048159 -133223285 - MIR SINE MIR -65 143 23 198 0 0 0 chr9 9048526 9048548 -133222896 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 1166 212 29 67 chr9 9050066 9050457 -133220987 + MLT1B LTR MaLR 1 342 -32 403 331 73 17 chr9 9050892 9050979 -133220465 + MIR SINE MIR 65 146 -116 1612 171 72 17 chr9 9050979 9051325 -133220119 - MLT1A1 LTR MaLR 0 365 1 403 331 73 17 chr9 9051325 9051415 -133220029 + MIR SINE MIR 146 252 -10 280 310 80 10 chr9 9051993 9052093 -133219351 - MIR SINE MIR -72 190 84 369 198 0 47 chr9 9052852 9052938 -133218506 - MIR SINE MIR -5 257 176 980 273 112 12 chr9 9053440 9053858 -133217586 + LTR16B LTR ERVL 1 460 -4 21 0 0 0 chr9 9054915 9054936 -133216508 + AT_rich Low_complexity Low_complexity 1 21 0 928 186 60 5 chr9 9056168 9056367 -133215077 + MER6B DNA MER2_type 1 210 0 2328 192 29 5 chr9 9056741 9057148 -133214296 + MLT2C2 LTR ERVL 7 427 -37 432 0 0 0 chr9 9057148 9057196 -133214248 + (CA)n Simple_repeat Simple_repeat 2 49 0 2328 192 29 5 chr9 9057196 9057235 -133214209 + MLT2C2 LTR ERVL 427 464 0 323 106 0 0 chr9 9058223 9058270 -133213174 - L2 LINE L2 0 3313 3267 2894 6 0 6 chr9 9058415 9058735 -133212709 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr9 9060169 9060191 -133211253 + AT_rich Low_complexity Low_complexity 1 22 0 2023 151 137 11 chr9 9061173 9061538 -133209906 + MSTA LTR MaLR 18 428 0 652 139 9 0 chr9 9061538 9061646 -133209798 + MSTA-int LTR MaLR 1 109 -1542 * 1779 128 7 14 chr9 9061641 9061931 -133209513 + MSTA-int LTR MaLR 1293 1580 0 2217 144 105 5 chr9 9061931 9062320 -133209124 + MSTA LTR MaLR 1 428 0 1090 278 86 24 chr9 9062827 9063198 -133208246 - MLT1J1 LTR MaLR -45 401 8 326 298 35 26 chr9 9064445 9064559 -133206885 - LTR67 LTR ERVL -6 551 437 1867 165 71 10 chr9 9064919 9065313 -133206131 + LTR52 LTR ERVL 1 418 -3 181 191 0 29 chr9 9066005 9066073 -133205371 + GA-rich Low_complexity Low_complexity 3 68 0 245 295 0 108 chr9 9066246 9066385 -133205059 - L3 LINE CR1 -21 1556 1433 229 402 21 0 chr9 9068174 9068271 -133203173 - MIR SINE MIR -142 120 22 355 240 88 2 chr9 9068521 9068640 -133202804 - MIR SINE MIR -67 141 13 295 312 65 14 chr9 9068677 9068815 -133202629 + MIR SINE MIR 67 211 -51 1069 202 10 5 chr9 9069163 9069371 -133202073 + MER2 DNA MER2_type 2 210 -135 23 54 0 0 chr9 9069381 9069418 -133202026 + AT_rich Low_complexity Low_complexity 1 37 0 353 269 67 10 chr9 9069510 9069614 -133201830 - MIR SINE MIR -102 160 51 7144 216 91 22 chr9 9069649 9070097 -133201347 - L1MB3 LINE L1 -2 6417 6001 2492 162 16 2 chr9 9070097 9070523 -133200921 + MSTB1 LTR MaLR 1 432 0 7144 216 91 22 chr9 9070523 9071786 -133199658 - L1MB3 LINE L1 -418 6001 4826 2065 132 0 0 chr9 9071786 9072097 -133199347 - AluSc SINE Alu 0 311 1 7144 216 91 22 chr9 9072097 9073158 -133198286 - L1MB3 LINE L1 -1593 4826 3839 1676 146 0 4 chr9 9073158 9073405 -133198039 - AluSx SINE Alu -66 246 1 7144 216 91 22 chr9 9073405 9075379 -133196065 - L1MB3 LINE L1 -2580 3839 1340 857 211 43 24 chr9 9075386 9075594 -133195850 + AluJo SINE Alu 84 295 -17 5375 172 147 18 chr9 9075616 9076784 -133194660 - L1MB3 LINE L1 -5044 1340 22 198 0 0 0 chr9 9077330 9077352 -133194092 + (T)n Simple_repeat Simple_repeat 1 22 0 212 328 0 0 chr9 9077513 9077574 -133193870 - L3b LINE CR1 -243 1340 1280 1187 321 80 5 chr9 9077865 9078451 -133192993 - L1ME3A LINE L1 -258 5981 5352 1710 263 94 22 chr9 9078477 9079467 -133191977 - L1ME3A LINE L1 -2814 3401 2341 316 298 123 6 chr9 9079505 9079676 -133191768 - L1ME3A LINE L1 -4093 2303 2113 21 0 0 0 chr9 9079855 9079876 -133191568 + AT_rich Low_complexity Low_complexity 1 21 0 364 208 28 176 chr9 9080908 9081124 -133190320 + MLT1K LTR MaLR 399 582 -6 323 335 112 6 chr9 9081137 9081316 -133190128 + L2 LINE L2 3116 3313 0 180 250 264 0 chr9 9081539 9081611 -133189833 + MIR SINE MIR 80 170 -92 241 224 0 59 chr9 9082129 9082214 -133189230 + A-rich Low_complexity Low_complexity 5 84 0 211 216 0 0 chr9 9083125 9083176 -133188268 + T-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 9084119 9084140 -133187304 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 9087011 9087036 -133184408 + AT_rich Low_complexity Low_complexity 1 25 0 301 197 28 0 chr9 9087052 9087123 -133184321 - MER116 DNA Mariner -7 73 1 219 256 0 0 chr9 9088637 9088680 -133182764 + L3 LINE CR1 1524 1566 -11 243 0 0 0 chr9 9088965 9088992 -133182452 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 360 0 0 0 chr9 9088991 9089031 -133182413 + (TA)n Simple_repeat Simple_repeat 1 40 0 12959 125 21 60 chr9 9089309 9091610 -133179834 + Tigger1 DNA MER2_type 3 2214 -204 29542 146 42 7 chr9 9091610 9097824 -133173620 - L1PA7 LINE L1 -3 6466 5 869 133 109 24 chr9 9097827 9097992 -133173452 + Tigger1 DNA MER2_type 2240 2418 0 214 308 165 0 chr9 9098148 9098239 -133173205 - MIR SINE MIR -72 136 31 23146 80 36 11 chr9 9100913 9105088 -133166356 + L1PA7 LINE L1 1852 6132 -22 194 0 0 37 chr9 9106600 9106627 -133164817 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 228 296 11 45 chr9 9106729 9106817 -133164627 + L2 LINE L2 3229 3313 0 185 299 86 34 chr9 9112189 9112306 -133159138 + MIR SINE MIR 34 156 -106 263 213 0 0 chr9 9112671 9112718 -133158726 + L2 LINE L2 3214 3260 -12 189 243 272 10 chr9 9113548 9113651 -133157793 + L2 LINE L2 2364 2493 -821 600 175 171 26 chr9 9113768 9113864 -133157580 - MER63B DNA MER1_type -750 312 231 4306 157 28 6 chr9 9113864 9114578 -133156866 + MER44D DNA MER2_type 2 603 -2 600 175 171 26 chr9 9114578 9114724 -133156720 - MER63B DNA MER1_type -831 231 7 412 252 118 30 chr9 9114834 9114969 -133156475 - L2 LINE L2 -8 3305 3159 1691 187 38 51 chr9 9115060 9115455 -133155989 + MLT1B LTR MaLR 1 390 0 472 317 60 42 chr9 9115725 9116110 -133155334 - HAL1b LINE L1 -659 689 298 34 24 0 0 chr9 9116514 9116555 -133154889 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr9 9117409 9117431 -133154013 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 9118238 9118273 -133153171 + AT_rich Low_complexity Low_complexity 1 35 0 727 275 67 22 chr9 9118366 9118635 -133152809 + L1MC4a LINE L1 5563 5843 -1965 270 0 0 0 chr9 9119218 9119248 -133152196 + (A)n Simple_repeat Simple_repeat 1 30 0 232 277 0 15 chr9 9119986 9120051 -133151393 + MER91 DNA MER1_type 1 64 -76 2342 99 0 0 chr9 9120308 9120610 -133150834 + AluSc SINE Alu 3 304 -5 255 31 0 0 chr9 9120893 9120925 -133150519 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1899 134 0 14 chr9 9120925 9121209 -133150235 - AluSx SINE Alu -32 280 1 894 137 0 0 chr9 9121293 9121439 -133150005 + (TA)n Simple_repeat Simple_repeat 2 147 0 829 80 0 0 chr9 9121440 9121540 -133149904 - AluSc SINE Alu -17 292 193 28 86 0 0 chr9 9121541 9121611 -133149833 + AT_rich Low_complexity Low_complexity 1 70 0 1688 181 74 23 chr9 9122473 9122826 -133148618 + MSTB LTR MaLR 1 371 -55 216 318 38 23 chr9 9123196 9123328 -133148116 + MER5A DNA MER1_type 31 164 -25 * 578 250 7 0 chr9 9123216 9123356 -133148088 - MER5A DNA MER1_type -40 149 9 249 263 123 35 chr9 9125949 9126063 -133145381 + MIR SINE MIR 57 180 -82 2545 28 0 3 chr9 9126322 9126613 -133144831 + AluY SINE Alu 22 311 0 292 221 42 63 chr9 9126623 9126665 -133144779 - MIR3 SINE MIR -5 203 162 798 156 9 133 chr9 9126665 9126813 -133144631 + MER5A DNA MER1_type 3 119 -70 1740 172 0 30 chr9 9126813 9127109 -133144335 - AluSx SINE Alu -25 287 1 798 156 9 133 chr9 9127109 9127171 -133144273 + MER5A DNA MER1_type 119 187 -2 292 221 42 63 chr9 9127171 9127223 -133144221 - MIR3 SINE MIR -46 162 111 336 184 233 0 chr9 9128294 9128397 -133143047 - MER103 DNA DNA -37 129 3 320 135 54 27 chr9 9129185 9129259 -133142185 + L1MC5 LINE L1 7832 7907 -54 25 0 0 0 chr9 9132608 9132633 -133138811 + AT_rich Low_complexity Low_complexity 1 25 0 468 229 145 39 chr9 9133093 9133488 -133137956 + MLT1H LTR MaLR 4 547 -2 751 268 34 43 chr9 9134261 9134586 -133136858 - MARNA DNA Mariner -9 577 256 789 245 38 5 chr9 9134793 9135005 -133136439 + MER20 DNA MER1_type 1 219 0 687 283 35 10 chr9 9135286 9135484 -133135960 - MIR SINE MIR -10 252 50 337 338 27 34 chr9 9135666 9135814 -133135630 + MIR SINE MIR 50 196 -66 291 114 0 0 chr9 9137670 9137714 -133133730 + (CA)n Simple_repeat Simple_repeat 1 44 0 229 146 0 49 chr9 9137887 9137928 -133133516 + MIR SINE MIR 80 118 -144 342 311 37 31 chr9 9138309 9138470 -133132974 + MIR SINE MIR 63 224 -38 673 282 64 37 chr9 9139809 9140062 -133131382 - MIR SINE MIR -2 260 4 396 0 0 0 chr9 9141083 9141127 -133130317 + (TG)n Simple_repeat Simple_repeat 2 45 0 414 57 0 0 chr9 9141275 9141328 -133130116 + (TATG)n Simple_repeat Simple_repeat 4 56 0 * 677 54 21 0 chr9 9141327 9141420 -133130024 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 363 23 0 0 chr9 9141598 9141642 -133129802 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr9 9141935 9141956 -133129488 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr9 9142726 9142761 -133128683 + AT_rich Low_complexity Low_complexity 1 35 0 341 310 70 16 chr9 9147412 9147541 -133123903 + MIR SINE MIR 127 262 0 236 298 43 21 chr9 9147643 9147737 -133123707 - L2 LINE L2 -9 3263 3168 26 30 0 0 chr9 9148149 9148182 -133123262 + AT_rich Low_complexity Low_complexity 1 33 0 2155 117 7 0 chr9 9152013 9152312 -133119132 - AluSp SINE Alu -12 301 1 1458 188 49 10 chr9 9152729 9153017 -133118427 + AluJo SINE Alu 1 299 -13 420 272 136 19 chr9 9153579 9153741 -133117703 - MIR SINE MIR -59 203 23 562 291 11 11 chr9 9155107 9155286 -133116158 + MIR SINE MIR 2 180 -82 189 74 0 0 chr9 9156470 9156497 -133114947 + (T)n Simple_repeat Simple_repeat 1 27 0 441 254 113 7 chr9 9157357 9157499 -133113945 - MIR SINE MIR -60 202 46 484 281 135 23 chr9 9157579 9157839 -133113605 + L2 LINE L2 2606 2894 -420 473 296 196 39 chr9 9158188 9158597 -133112847 + L3 LINE CR1 1090 1562 -15 828 159 16 0 chr9 9159596 9159722 -133111722 + AluJb SINE Alu 7 134 -178 1467 202 10 17 chr9 9159735 9160027 -133111417 + AluJo SINE Alu 6 295 -17 186 294 88 15 chr9 9161203 9161271 -133110173 - MIR3 SINE MIR -18 190 118 320 378 7 13 chr9 9161981 9162132 -133109312 + MIR3 SINE MIR 41 190 -18 203 220 55 88 chr9 9163612 9163703 -133107741 + MIR SINE MIR 119 206 -56 715 233 61 0 chr9 9165656 9165819 -133105625 - MIR SINE MIR 0 262 90 1402 179 23 101 chr9 9166000 9166396 -133105048 + MLT1A1 LTR MaLR 1 365 0 271 336 38 15 chr9 9167320 9167451 -133103993 + MIR SINE MIR 41 174 -88 385 257 88 61 chr9 9168142 9168291 -133103153 + MIR3 SINE MIR 9 161 -68 218 246 228 0 chr9 9168398 9168455 -133102989 - MIR SINE MIR -69 139 70 989 172 0 0 chr9 9168650 9168807 -133102637 - AluJb SINE Alu -11 301 145 26 0 0 0 chr9 9170327 9170353 -133101091 + AT_rich Low_complexity Low_complexity 1 26 0 2214 99 0 20 chr9 9171613 9171916 -133099528 - AluSx SINE Alu -15 297 1 242 242 8 42 chr9 9172790 9172910 -133098534 + T-rich Low_complexity Low_complexity 2 117 0 230 337 191 13 chr9 9173738 9174041 -133097403 + L2 LINE L2 2429 2785 -529 322 261 109 25 chr9 9174723 9174842 -133096602 - MIR SINE MIR -30 232 104 191 192 58 39 chr9 9174837 9174889 -133096555 - L2 LINE L2 -4 3309 3257 * 209 338 39 0 chr9 9174897 9174974 -133096470 - MIR SINE MIR -155 107 28 737 325 49 0 chr9 9176604 9176847 -133094597 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 9178749 9178787 -133092657 + AT_rich Low_complexity Low_complexity 1 38 0 2050 137 13 0 chr9 9178788 9179087 -133092357 - AluSx SINE Alu -5 307 5 622 177 0 54 chr9 9179609 9179739 -133091705 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 9181680 9181705 -133089739 + AT_rich Low_complexity Low_complexity 1 25 0 285 291 34 34 chr9 9181846 9181963 -133089481 + Tigger8 DNA MER2_type 127 243 -423 490 219 10 0 chr9 9182135 9182231 -133089213 - MER94 DNA DNA -35 99 3 237 65 0 0 chr9 9182357 9182388 -133089056 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 506 29 0 14 chr9 9182492 9182561 -133088883 + (GA)n Simple_repeat Simple_repeat 1 68 0 22 0 0 0 chr9 9183048 9183070 -133088374 + AT_rich Low_complexity Low_complexity 1 22 0 266 262 85 37 chr9 9183869 9184033 -133087411 + L1ME4a LINE L1 5933 6104 -17 558 286 5 46 chr9 9184375 9184571 -133086873 - MIR SINE MIR -70 192 5 1113 186 12 39 chr9 9186576 9186834 -133084610 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 9187129 9187150 -133084294 + AT_rich Low_complexity Low_complexity 1 21 0 340 308 68 8 chr9 9187757 9187874 -133083570 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 9187953 9187988 -133083456 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 9188491 9188524 -133082920 + AT_rich Low_complexity Low_complexity 1 33 0 16824 68 1 5 chr9 9188809 9191047 -133080397 + L1P LINE L1 2780 5009 -1137 261 98 0 0 chr9 9191168 9191209 -133080235 + (C)n Simple_repeat Simple_repeat 1 41 0 478 273 58 0 chr9 9191246 9191385 -133080059 + MIR SINE MIR 111 257 -5 1862 107 4 0 chr9 9192649 9192902 -133078542 + AluSx SINE Alu 1 254 -58 962 306 90 35 chr9 9192938 9193483 -133077961 + L1M4 LINE L1 192 766 -5776 6854 118 8 98 chr9 9193584 9194918 -133076526 + Tigger1 DNA MER2_type 995 2208 -210 4459 84 0 0 chr9 9194918 9195510 -133075934 - L1PA7 LINE L1 -1 6153 5562 2634 50 0 0 chr9 9195510 9195833 -133075611 + L1PA5 LINE L1 5830 6152 -2 489 255 213 0 chr9 9196662 9196803 -133074641 - MER5A DNA MER1_type -2 187 17 214 333 11 21 chr9 9197091 9197184 -133074260 + L2 LINE L2 2604 2695 -619 284 293 83 38 chr9 9197357 9197514 -133073930 + L2 LINE L2 2896 3059 -213 221 348 87 26 chr9 9197627 9197742 -133073702 + L2 LINE L2 3134 3255 -17 413 210 15 29 chr9 9198054 9198259 -133073185 + GA-rich Low_complexity Low_complexity 1 202 0 320 202 8 42 chr9 9198267 9198386 -133073058 + A-rich Low_complexity Low_complexity 2 116 0 314 269 134 29 chr9 9198492 9198663 -133072781 + L1ME LINE L1 5607 5795 -326 430 205 90 32 chr9 9199163 9199188 -133072256 - MER83B-int LTR ERV1 -3789 4331 4309 1725 183 10 0 chr9 9199188 9199489 -133071955 - AluJo SINE Alu -8 304 1 430 205 90 32 chr9 9199489 9199619 -133071825 - MER83B-int LTR ERV1 -3811 4309 4167 391 253 58 35 chr9 9199633 9199992 -133071452 - MER83B-int LTR ERV1 -1938 2942 1952 3587 79 8 2 chr9 9199992 9200500 -133070944 - LTR6B LTR ERV1 0 558 48 6185 137 1 1 chr9 9200500 9201435 -133070009 - HERVS71 LTR ERV1 -48 8930 7996 645 325 4 17 chr9 9202551 9202782 -133068662 - MIR SINE MIR -34 228 1 822 210 23 109 chr9 9203127 9203362 -133068082 - MIR SINE MIR -10 252 39 1098 153 9 37 chr9 9203362 9203577 -133067867 - MER3 DNA MER1_type 0 209 1 822 210 23 109 chr9 9203577 9203598 -133067846 - MIR SINE MIR -223 39 18 3480 68 0 1 chr9 9203848 9205031 -133066413 - L1P LINE L1 -4015 2131 858 * 5452 35 17 0 chr9 9205029 9205965 -133065479 + L1PA4 LINE L1 5017 5968 -187 1865 148 0 24 chr9 9207577 9207874 -133063570 + AluJb SINE Alu 3 292 -20 648 172 0 67 chr9 9207983 9208117 -133063327 + FLAM_A SINE Alu 1 125 -8 317 295 18 27 chr9 9208247 9208359 -133063085 - L1MEd LINE L1 -5310 809 699 922 193 0 0 chr9 9208361 9208506 -133062938 - AluJb SINE Alu -28 284 140 2003 119 7 23 chr9 9209001 9209303 -133062141 - AluSx SINE Alu -15 297 1 2459 93 0 3 chr9 9210254 9210567 -133060877 - AluSx SINE Alu 0 312 1 720 169 124 28 chr9 9210892 9211070 -133060374 - MER31B LTR ERV1 0 466 272 255 277 50 40 chr9 9211180 9211281 -133060163 + MER5B DNA MER1_type 19 120 -58 1390 178 90 59 chr9 9211392 9211808 -133059636 - MER21B LTR ERV1 -186 745 317 1486 207 133 85 chr9 9211814 9212326 -133059118 + MER50 LTR ERV1 10 565 -169 2284 110 0 0 chr9 9212326 9212625 -133058819 - AluSg SINE Alu -11 299 1 1486 207 133 85 chr9 9212625 9212804 -133058640 + MER50 LTR ERV1 565 734 0 1112 151 45 113 chr9 9212805 9213151 -133058293 - MER39 LTR ERV1 -237 470 62 278 171 0 122 chr9 9213263 9213345 -133058099 - MER21A LTR ERV1 -859 72 1 544 266 66 8 chr9 9213353 9213593 -133057851 - L1M4 LINE L1 -1857 4289 4045 321 197 0 0 chr9 9213698 9213764 -133057680 - LTR54B LTR ERV1 -419 79 14 6681 169 32 14 chr9 9213764 9215073 -133056371 - MER57-int LTR ERV1 -381 7156 5825 5787 152 58 31 chr9 9215398 9216035 -133055409 - MER57-int LTR ERV1 -1717 5820 5202 1452 182 87 0 chr9 9216035 9216153 -133055291 + AluSx SINE Alu 1 107 -205 419 0 20 0 chr9 9216153 9216204 -133055240 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1452 182 87 0 chr9 9216204 9216360 -133055084 + AluSx SINE Alu 107 299 -13 5787 152 58 31 chr9 9216360 9216964 -133054480 - MER57-int LTR ERV1 -2335 5202 4545 2249 94 0 20 chr9 9218450 9218748 -133052696 + AluSg SINE Alu 1 292 -18 1790 175 24 7 chr9 9219643 9219935 -133051509 - AluSx SINE Alu -15 297 1 520 248 149 30 chr9 9219963 9220326 -133051118 - L1ME4a LINE L1 -2 6119 5714 1076 181 8 46 chr9 9220327 9220416 -133051028 + MLT2B1 LTR ERVL 1 92 -428 4499 87 51 6 chr9 9220416 9221048 -133050396 - PABL_A LTR ERV1 0 660 1 1076 181 8 46 chr9 9221048 9221196 -133050248 + MLT2B1 LTR ERVL 92 229 -291 23 78 0 0 chr9 9221838 9221889 -133049555 + AT_rich Low_complexity Low_complexity 1 51 0 261 0 0 0 chr9 9221889 9221918 -133049526 + (TA)n Simple_repeat Simple_repeat 2 30 0 2171 120 0 3 chr9 9221918 9222217 -133049227 - AluSx SINE Alu -13 299 2 763 61 0 0 chr9 9222488 9222586 -133048858 + L1P LINE L1 1 98 -6048 * 5321 119 0 2 chr9 9222584 9223418 -133048026 + L1P LINE L1 623 1454 -4692 12768 51 5 0 chr9 9223531 9225819 -133045625 - L1PA5 LINE L1 -140 6014 3716 7552 28 16 0 chr9 9227740 9228747 -133042697 - L1PA3 LINE L1 0 6155 5144 3601 209 125 64 chr9 9228955 9229511 -133041933 + L1MC4 LINE L1 6450 6971 -1071 1851 241 124 8 chr9 9229511 9230041 -133041403 + MLT1G1 LTR MaLR 4 595 0 3601 209 125 64 chr9 9230041 9230850 -133040594 + L1MC4 LINE L1 6971 7898 -144 983 135 6 0 chr9 9230962 9231125 -133040319 - L1MA4 LINE L1 -362 5938 5775 257 214 60 0 chr9 9231126 9231210 -133040234 + (TA)n Simple_repeat Simple_repeat 2 90 0 437 289 121 0 chr9 9231210 9231400 -133040044 + LTR33 LTR ERVL 309 521 0 352 384 23 6 chr9 9231648 9231820 -133039624 + MIR3 SINE MIR 19 193 -15 23 0 0 0 chr9 9232285 9232308 -133039136 + AT_rich Low_complexity Low_complexity 1 23 0 2666 86 6 0 chr9 9232611 9232962 -133038482 + THE1A LTR MaLR 3 355 0 2857 96 7 0 chr9 9232963 9233380 -133038064 + THE1A-int LTR MaLR 2 421 -1159 2326 116 30 58 chr9 9233484 9233701 -133037743 - L1MA5A LINE L1 -175 6122 5900 1749 132 90 39 chr9 9233701 9234056 -133037388 - THE1C LTR MaLR -2 373 1 2326 116 30 58 chr9 9234056 9234143 -133037301 - L1MA5A LINE L1 -397 5900 5812 2038 158 0 0 chr9 9234143 9234446 -133036998 - AluJb SINE Alu -9 303 1 2326 116 30 58 chr9 9234446 9234604 -133036840 - L1MA5A LINE L1 -485 5812 5672 1260 220 86 40 chr9 9234611 9235016 -133036428 - L1ME2 LINE L1 -9 6155 5732 713 199 0 14 chr9 9235675 9235816 -133035628 + FLAM_C SINE Alu 3 141 -2 198 167 0 0 chr9 9235927 9235963 -133035481 + (TA)n Simple_repeat Simple_repeat 2 37 0 707 257 45 4 chr9 9235997 9236242 -133035202 - L1ME3A LINE L1 -220 5950 5696 23 33 0 0 chr9 9236754 9236784 -133034660 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr9 9236821 9236845 -133034599 + (TA)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr9 9236913 9236948 -133034496 + AT_rich Low_complexity Low_complexity 1 35 0 1630 202 40 3 chr9 9237365 9237717 -133033727 - MLT1A1 LTR MaLR 0 365 1 306 208 0 14 chr9 9237925 9237997 -133033447 + HAL1b LINE L1 1197 1267 -81 469 33 0 0 chr9 9238540 9238601 -133032843 + L1PA4 LINE L1 6092 6152 -3 1756 170 3 50 chr9 9238601 9238983 -133032461 - MSTA LTR MaLR -64 364 1 8260 195 29 5 chr9 9238983 9240595 -133030849 - MSTA-int LTR MaLR 0 1651 2 702 151 122 14 chr9 9240596 9240735 -133030709 - MSTA LTR MaLR 0 428 275 315 93 0 0 chr9 9240735 9240778 -133030666 - THE1A LTR MaLR 0 355 313 644 179 0 0 chr9 9240778 9240901 -133030543 - THE1B LTR MaLR 0 364 242 24 0 0 0 chr9 9241192 9241216 -133030228 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr9 9241349 9241386 -133030058 + AT_rich Low_complexity Low_complexity 1 37 0 206 146 24 24 chr9 9242794 9242835 -133028609 + CT-rich Low_complexity Low_complexity 2 42 0 588 98 12 0 chr9 9242963 9243045 -133028399 + AluY SINE Alu 1 83 -227 224 307 40 0 chr9 9243634 9243709 -133027735 + MIR SINE MIR 171 248 -14 291 28 0 0 chr9 9243901 9243937 -133027507 + (TG)n Simple_repeat Simple_repeat 2 37 0 2393 93 0 3 chr9 9244324 9244635 -133026809 - AluSg SINE Alu 0 310 1 1813 144 0 0 chr9 9244652 9244902 -133026542 - AluSq SINE Alu -63 250 1 308 270 87 0 chr9 9244903 9245018 -133026426 + L1ME2 LINE L1 6040 6164 0 332 174 122 26 chr9 9245038 9245153 -133026291 + L1MC5 LINE L1 7786 7911 -50 287 278 69 14 chr9 9246088 9246232 -133025212 + BaEV-int LTR ERV1 216 367 -6282 499 325 5 10 chr9 9246577 9246780 -133024664 + BaEV-int LTR ERV1 802 1003 -6782 732 320 39 34 chr9 9246947 9247634 -133023810 + BaEV-int LTR ERV1 1048 1738 -4911 1836 118 16 6 chr9 9247821 9248143 -133023301 - L1M3f LINE L1 -4221 1107 783 4941 120 5 0 chr9 9248143 9248893 -133022551 - THE1A-int LTR MaLR -826 754 1 2457 130 0 6 chr9 9248893 9249248 -133022196 - THE1A LTR MaLR 0 355 3 3923 111 48 0 chr9 9249252 9249810 -133021634 + BaEV-int LTR ERV1 4152 4736 -2355 610 104 0 0 chr9 9249810 9249888 -133021556 + Alu SINE Alu 2 78 -232 180 0 0 0 chr9 9250927 9250947 -133020497 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1537 236 51 6 chr9 9251002 9251333 -133020111 + MLT1A1 LTR MaLR 14 359 -6 203 0 37 0 chr9 9251575 9251602 -133019842 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 30 111 0 0 chr9 9251830 9251965 -133019479 + AT_rich Low_complexity Low_complexity 1 135 0 2472 172 17 44 chr9 9252507 9253242 -133018202 - MER52A-int LTR ERV1 -1331 1966 953 * 6312 180 35 41 chr9 9253236 9253449 -133017995 - MER52A-int LTR ERV1 -1882 1261 1048 2446 159 3 0 chr9 9253449 9253821 -133017623 - THE1C LTR MaLR -2 373 1 6312 180 35 41 chr9 9253821 9254914 -133016530 - MER52A-int LTR ERV1 -2095 1048 30 480 271 6 54 chr9 9254919 9255085 -133016359 - MER52A LTR ERV1 0 1755 1598 561 306 22 71 chr9 9255090 9255358 -133016086 - MER52A LTR ERV1 -285 1470 1216 1916 170 69 20 chr9 9255594 9255941 -133015503 + THE1B LTR MaLR 1 364 0 11764 115 10 2 chr9 9255942 9257508 -133013936 + THE1B-int LTR MaLR 2 1579 -1 1065 167 59 25 chr9 9257509 9257713 -133013731 + THE1B LTR MaLR 1 211 -153 1092 105 6 19 chr9 9257813 9257975 -133013469 - LTR14B LTR ERVK -432 176 17 662 336 8 4 chr9 9257975 9258237 -133013207 + Harlequin LTR ERV1 5494 5756 -2029 333 269 25 25 chr9 9258468 9258587 -133012857 + Harlequin LTR ERV1 4735 4853 -1796 466 284 78 35 chr9 9258986 9259218 -133012226 + Harlequin LTR ERV1 5297 5538 -1111 332 193 50 67 chr9 9259445 9259564 -133011880 + Harlequin LTR ERV1 3819 3935 -2961 2007 78 11 14 chr9 9259615 9259898 -133011546 - AluY SINE Alu -1 310 29 20863 33 7 0 chr9 9260204 9262705 -133008739 + L1P LINE L1 2545 5062 -1084 14860 89 6 5 chr9 9262805 9264869 -133006575 + L1P LINE L1 3038 5104 -1042 737 325 49 0 chr9 9315384 9315627 -132955817 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 9317529 9317567 -132953877 + AT_rich Low_complexity Low_complexity 1 38 0 2050 137 13 0 chr9 9317568 9317867 -132953577 - AluSx SINE Alu -5 307 5 622 177 0 54 chr9 9318389 9318519 -132952925 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 9320460 9320485 -132950959 + AT_rich Low_complexity Low_complexity 1 25 0 285 291 34 34 chr9 9320626 9320743 -132950701 + Tigger8 DNA MER2_type 127 243 -423 490 219 10 0 chr9 9320915 9321011 -132950433 - MER94 DNA DNA -35 99 3 636 143 0 0 chr9 9321138 9321250 -132950194 + (GA)n Simple_repeat Simple_repeat 1 112 0 22 0 0 0 chr9 9321736 9321758 -132949686 + AT_rich Low_complexity Low_complexity 1 22 0 266 262 85 37 chr9 9322557 9322721 -132948723 + L1ME4a LINE L1 5933 6104 -17 558 286 5 46 chr9 9323063 9323259 -132948185 - MIR SINE MIR -70 192 5 1144 189 8 39 chr9 9325264 9325523 -132945921 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 9325818 9325839 -132945605 + AT_rich Low_complexity Low_complexity 1 21 0 340 308 68 8 chr9 9326446 9326563 -132944881 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 9326642 9326677 -132944767 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 9327071 9327104 -132944340 + AT_rich Low_complexity Low_complexity 1 33 0 409 199 7 28 chr9 9327529 9327670 -132943774 + CT-rich Low_complexity Low_complexity 1 138 0 1901 159 7 3 chr9 9328135 9328443 -132943001 + AluJb SINE Alu 3 311 -1 21 0 0 0 chr9 9330289 9330310 -132941134 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 9330413 9330434 -132941010 + AT_rich Low_complexity Low_complexity 1 21 0 914 227 71 21 chr9 9330575 9330813 -132940631 + MIR SINE MIR 11 260 -2 245 256 24 39 chr9 9330927 9331029 -132940415 + GA-rich Low_complexity Low_complexity 3 170 0 207 357 14 13 chr9 9332036 9332115 -132939329 - MIR3 SINE MIR -54 154 75 414 327 73 29 chr9 9332433 9332638 -132938806 - MIR SINE MIR -39 223 10 183 146 0 0 chr9 9333922 9333963 -132937481 + (TTA)n Simple_repeat Simple_repeat 2 42 0 737 224 6 17 chr9 9334022 9334196 -132937248 + MER104 DNA Tc2 6 177 -3 451 333 138 4 chr9 9334199 9334430 -132937014 - MIR SINE MIR 0 262 1 204 40 0 0 chr9 9334941 9334966 -132936478 + (TG)n Simple_repeat Simple_repeat 2 26 0 360 289 47 31 chr9 9335542 9335678 -132935766 + MIR3 SINE MIR 49 187 -21 1906 148 0 22 chr9 9336527 9336844 -132934600 - AluJb SINE Alu -2 310 1 500 219 0 0 chr9 9336893 9336989 -132934455 - MER5A DNA MER1_type -80 109 14 425 309 8 8 chr9 9337931 9338057 -132933387 + MER5A DNA MER1_type 7 132 -57 1841 92 0 0 chr9 9338060 9338311 -132933133 - L1P LINE L1 -2459 3687 3437 279 286 52 104 chr9 9338512 9338743 -132932701 - L3b LINE CR1 -74 1509 1291 5632 165 87 3 chr9 9339355 9340243 -132931201 + Tigger3b DNA MER2_type 2 813 -2215 294 29 0 0 chr9 9340243 9340278 -132931166 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1968 107 7 4 chr9 9340278 9340548 -132930896 - AluSq SINE Alu -42 271 1 5632 165 87 3 chr9 9340548 9340791 -132930653 + Tigger3b DNA MER2_type 812 1230 -1 333 118 0 0 chr9 9341968 9342019 -132929425 + (CA)n Simple_repeat Simple_repeat 2 52 0 1085 159 85 0 chr9 9342368 9342569 -132928875 + L1MA7 LINE L1 5893 6110 -181 27 0 0 0 chr9 9342591 9342618 -132928826 + AT_rich Low_complexity Low_complexity 1 27 0 316 344 94 25 chr9 9345443 9345603 -132925841 + MIR3 SINE MIR 8 178 -30 279 0 0 0 chr9 9346203 9346234 -132925210 + (T)n Simple_repeat Simple_repeat 1 31 0 340 250 26 0 chr9 9346235 9346311 -132925133 + MER5B DNA MER1_type 65 142 -36 2239 99 3 0 chr9 9346587 9346880 -132924564 - AluSg SINE Alu -16 294 1 380 299 24 31 chr9 9347090 9347217 -132924227 - MIR3 SINE MIR -6 202 77 225 191 0 0 chr9 9347324 9347366 -132924078 - Charlie8 DNA MER1_type -28 2389 2348 377 301 78 44 chr9 9347377 9347817 -132923627 - Charlie8 DNA MER1_type -2196 221 1 272 324 70 28 chr9 9348003 9348145 -132923299 - MIR3 SINE MIR -49 159 12 1094 213 13 30 chr9 9349186 9349416 -132922028 + AluJb SINE Alu 61 286 -26 392 324 42 19 chr9 9350317 9350530 -132920914 + L1MC/D LINE L1 5586 5803 -2005 29 60 0 0 chr9 9350771 9350821 -132920623 + AT_rich Low_complexity Low_complexity 1 50 0 1645 182 0 10 chr9 9354310 9354601 -132916843 + AluJb SINE Alu 1 288 -24 204 125 0 0 chr9 9355513 9355545 -132915899 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 294 252 146 24 chr9 9359275 9359398 -132912046 + MIR3 SINE MIR 57 194 -14 2276 68 0 4 chr9 9359452 9359731 -132911713 - AluY SINE Alu -33 278 1 896 200 5 36 chr9 9359943 9360138 -132911306 - MER5A DNA MER1_type 0 189 1 243 220 17 0 chr9 9360205 9360264 -132911180 + (TA)n Simple_repeat Simple_repeat 2 61 0 185 0 40 0 chr9 9360487 9360512 -132910932 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 333 0 0 0 chr9 9361079 9361116 -132910328 + (TG)n Simple_repeat Simple_repeat 1 37 0 315 281 156 0 chr9 9362386 9362482 -132908962 - L2 LINE L2 -18 3295 3185 29 28 0 0 chr9 9363197 9363233 -132908211 + AT_rich Low_complexity Low_complexity 1 36 0 426 263 51 36 chr9 9363409 9363546 -132907898 - MIR3 SINE MIR -45 163 25 22 0 0 0 chr9 9365785 9365807 -132905637 + AT_rich Low_complexity Low_complexity 1 22 0 219 275 110 28 chr9 9367172 9367281 -132904163 - L2 LINE L2 -15 3298 3181 854 150 0 0 chr9 9368090 9368217 -132903227 - FLAM_C SINE Alu -16 127 1 247 375 27 18 chr9 9369139 9369251 -132902193 + L2 LINE L2 3154 3266 -6 234 0 0 0 chr9 9369576 9369602 -132901842 + (A)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr9 9372945 9372971 -132898473 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr9 9373366 9373395 -132898049 + AT_rich Low_complexity Low_complexity 1 29 0 722 185 15 29 chr9 9373646 9373809 -132897635 - MIR SINE MIR 0 262 103 1311 204 39 0 chr9 9378778 9379086 -132892358 + MER33 DNA MER1_type 5 324 0 565 308 31 62 chr9 9380269 9380717 -132890727 + L2 LINE L2 340 773 -2541 1290 346 103 36 chr9 9380717 9382315 -132889129 + L2 LINE L2 1118 2823 -491 1997 158 3 32 chr9 9382375 9382722 -132888722 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr9 9382932 9382953 -132888491 + AT_rich Low_complexity Low_complexity 1 21 0 462 257 182 30 chr9 9384113 9384315 -132887129 + MIR SINE MIR 3 228 -34 479 248 35 0 chr9 9384344 9384457 -132886987 + MIR SINE MIR 75 191 -71 275 319 21 11 chr9 9386155 9386249 -132885195 + L2 LINE L2 2976 3070 -202 265 302 35 99 chr9 9386477 9386679 -132884765 + L2 LINE L2 2909 3097 -175 582 226 68 0 chr9 9386835 9386968 -132884476 + L1MA10 LINE L1 6192 6333 -1 2265 91 3 3 chr9 9387126 9387434 -132884010 + AluY SINE Alu 1 308 -3 2122 117 0 0 chr9 9388045 9388348 -132883096 - AluSg SINE Alu 0 303 1 2100 98 0 80 chr9 9389738 9390098 -132881346 + AluY SINE Alu 1 333 0 353 286 56 89 chr9 9392982 9393251 -132878193 - MIR SINE MIR -1 261 2 338 263 0 0 chr9 9393349 9393444 -132878000 + MIR SINE MIR 120 214 -48 1326 207 46 25 chr9 9393715 9393803 -132877641 + AluJo SINE Alu 1 86 -226 2064 94 33 0 chr9 9393803 9394108 -132877336 + AluSp SINE Alu 1 314 0 1326 207 46 25 chr9 9394108 9394298 -132877146 + AluJo SINE Alu 86 286 -26 22 56 0 0 chr9 9394910 9394946 -132876498 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr9 9397926 9397946 -132873498 + (A)n Simple_repeat Simple_repeat 1 20 0 705 288 95 21 chr9 9398561 9398888 -132872556 + L2 LINE L2 2943 3293 -20 594 226 119 43 chr9 9399459 9399694 -132871750 + MIR SINE MIR 7 259 -3 498 91 0 0 chr9 9400231 9400308 -132871136 + (CA)n Simple_repeat Simple_repeat 2 78 0 306 344 139 35 chr9 9401186 9401756 -132869688 + L2 LINE L2 2045 2673 -641 643 233 38 88 chr9 9401757 9402019 -132869425 - MER112 DNA MER1_type 0 260 12 507 17 0 0 chr9 9402439 9402499 -132868945 + (CA)n Simple_repeat Simple_repeat 2 61 0 1078 80 98 18 chr9 9403057 9403220 -132868224 - MER30 DNA MER1_type -54 176 1 230 245 0 53 chr9 9403966 9404060 -132867384 + GA-rich Low_complexity Low_complexity 2 90 0 1756 108 0 15 chr9 9404534 9404794 -132866650 - AluSc SINE Alu -4 305 50 183 129 0 0 chr9 9406318 9406349 -132865095 + (A)n Simple_repeat Simple_repeat 1 31 0 315 49 0 0 chr9 9406817 9406858 -132864586 + (A)n Simple_repeat Simple_repeat 1 41 0 211 282 0 0 chr9 9407381 9407452 -132863992 + A-rich Low_complexity Low_complexity 1 71 0 234 217 0 0 chr9 9409099 9409145 -132862299 + L1MC4 LINE L1 6658 6703 -1339 2411 76 0 10 chr9 9411608 9411922 -132859522 + AluY SINE Alu 1 311 0 212 162 0 0 chr9 9412105 9412142 -132859302 + (TATG)n Simple_repeat Simple_repeat 2 38 0 755 289 47 16 chr9 9412735 9412988 -132858456 + MIR SINE MIR 2 262 0 213 356 0 0 chr9 9413985 9414072 -132857372 + MIR SINE MIR 160 246 -16 180 0 0 0 chr9 9414262 9414282 -132857162 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 450 79 0 0 chr9 9415131 9415194 -132856250 + (TG)n Simple_repeat Simple_repeat 2 64 0 1683 172 0 26 chr9 9416274 9416577 -132854867 + AluJo SINE Alu 6 300 -12 562 297 79 40 chr9 9416604 9416907 -132854537 - MER102b DNA MER1_type -8 333 19 242 239 14 0 chr9 9417278 9417349 -132854095 + (TA)n Simple_repeat Simple_repeat 1 72 0 1516 194 7 14 chr9 9417350 9417638 -132853806 - AluJb SINE Alu -26 286 1 21 0 0 0 chr9 9417745 9417766 -132853678 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 9417973 9418001 -132853443 + AT_rich Low_complexity Low_complexity 1 28 0 2003 145 49 25 chr9 9421029 9421395 -132850049 + THE1C LTR MaLR 1 375 0 395 258 88 57 chr9 9421409 9421603 -132849841 + MIR SINE MIR 39 238 -24 2132 195 28 11 chr9 9421689 9422146 -132849298 + MLT1C LTR MaLR 1 465 -2 342 239 146 23 chr9 9422150 9422280 -132849164 - MIR SINE MIR -83 179 34 1900 130 29 29 chr9 9423066 9423373 -132848071 - AluSx SINE Alu -5 307 1 435 286 29 0 chr9 9424919 9425125 -132846319 + MIR SINE MIR 49 229 -33 264 361 0 53 chr9 9425820 9425953 -132845491 + L2 LINE L2 3188 3313 0 244 369 0 0 chr9 9426674 9426758 -132844686 + L2 LINE L2 3188 3271 -42 28 48 0 0 chr9 9429089 9429131 -132842313 + AT_rich Low_complexity Low_complexity 1 42 0 219 235 20 0 chr9 9430843 9430894 -132840550 + GA-rich Low_complexity Low_complexity 4 55 0 336 200 0 0 chr9 9432518 9432588 -132838856 + A-rich Low_complexity Low_complexity 1 70 0 184 128 21 21 chr9 9432681 9432728 -132838716 + GA-rich Low_complexity Low_complexity 2 48 0 195 100 0 0 chr9 9433291 9433321 -132838123 + (TA)n Simple_repeat Simple_repeat 1 30 0 26 0 0 0 chr9 9433534 9433560 -132837884 + AT_rich Low_complexity Low_complexity 1 26 0 250 200 17 0 chr9 9434761 9434821 -132836623 + A-rich Low_complexity Low_complexity 1 61 0 824 65 0 0 chr9 9436063 9436170 -132835274 - L1PA5 LINE L1 -5 6149 6043 340 219 27 0 chr9 9441207 9441280 -132830164 - L2 LINE L2 -2 3311 3237 214 256 105 12 chr9 9441337 9441423 -132830021 + MIR SINE MIR 141 234 -28 362 198 23 0 chr9 9442660 9442746 -132828698 - L1MC4 LINE L1 -1339 6703 6616 32 57 0 0 chr9 9444529 9444582 -132826862 + AT_rich Low_complexity Low_complexity 1 53 0 1318 219 70 147 chr9 9444801 9446360 -132825084 + L1MC4 LINE L1 6539 7896 -146 1365 228 7 7 chr9 9447496 9447794 -132823650 - AluJb SINE Alu -11 301 4 592 210 14 22 chr9 9447796 9447934 -132823510 - FLAM_C SINE Alu -6 137 1 202 195 0 0 chr9 9447936 9447977 -132823467 + (TG)n Simple_repeat Simple_repeat 2 42 0 2102 135 3 0 chr9 9449974 9450277 -132821167 - AluSg SINE Alu -6 304 1 870 122 8 0 chr9 9450432 9450563 -132820881 - AluSx SINE Alu -9 303 172 530 107 12 12 chr9 9450563 9450647 -132820797 - AluSx SINE Alu -227 86 3 2011 136 3 3 chr9 9450735 9451036 -132820408 - AluSx SINE Alu -9 303 3 274 163 20 0 chr9 9451036 9451085 -132820359 + MADE1 DNA Mariner 30 79 -1 198 0 0 0 chr9 9451157 9451179 -132820265 + (T)n Simple_repeat Simple_repeat 1 22 0 2115 125 0 6 chr9 9452755 9453068 -132818376 - AluSx SINE Alu -1 311 1 203 167 0 0 chr9 9453590 9453626 -132817818 + GA-rich Low_complexity Low_complexity 2 37 0 1677 194 7 0 chr9 9453635 9453929 -132817515 + AluJb SINE Alu 6 301 -11 1902 152 3 3 chr9 9454638 9454935 -132816509 - AluSx SINE Alu -15 297 1 2483 68 13 0 chr9 9454949 9455256 -132816188 - AluSp SINE Alu 0 313 3 227 304 138 29 chr9 9455263 9455401 -132816043 - L2 LINE L2 -567 2747 2595 275 306 28 19 chr9 9456541 9456649 -132814795 + MIR SINE MIR 152 260 -2 242 231 19 0 chr9 9457720 9457772 -132813672 + CT-rich Low_complexity Low_complexity 3 55 0 286 100 0 80 chr9 9459925 9459975 -132811469 + U2 snRNA snRNA 1 46 -142 2183 103 0 4 chr9 9460174 9460479 -132810965 + AluSg SINE Alu 1 304 0 1427 182 50 12 chr9 9461402 9461660 -132809784 + AluJb SINE Alu 1 268 -44 213 268 0 0 chr9 9463562 9463603 -132807841 + L2 LINE L2 3215 3255 -17 213 39 0 0 chr9 9463699 9463725 -132807719 + (TA)n Simple_repeat Simple_repeat 2 27 0 2326 106 0 0 chr9 9463728 9464040 -132807404 + AluSx SINE Alu 1 312 0 342 67 0 0 chr9 9464047 9464092 -132807352 + (CA)n Simple_repeat Simple_repeat 2 46 0 222 235 0 0 chr9 9464092 9464143 -132807301 + (TA)n Simple_repeat Simple_repeat 2 52 0 984 203 83 0 chr9 9465419 9465660 -132805784 + L1MA4 LINE L1 6036 6296 -4 330 87 0 0 chr9 9466704 9466750 -132804694 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr9 9466791 9466813 -132804631 + AT_rich Low_complexity Low_complexity 1 22 0 2337 206 28 29 chr9 9467211 9467872 -132803572 + LTR27 LTR ERV1 1 498 -138 22 35 0 0 chr9 9468091 9468120 -132803324 + AT_rich Low_complexity Low_complexity 1 29 0 1922 158 0 0 chr9 9468696 9469004 -132802440 - AluJb SINE Alu 0 308 1 714 219 63 15 chr9 9469060 9469265 -132802179 - L1M4 LINE L1 -1034 5112 4898 644 256 48 6 chr9 9469264 9469489 -132801955 + L1ME2 LINE L1 5756 5993 -177 * 465 186 21 0 chr9 9469538 9469635 -132801809 + L1MA10 LINE L1 6221 6319 -15 209 152 22 0 chr9 9469640 9469668 -132801776 + (CATATA)n Simple_repeat Simple_repeat 3 29 -20 1978 202 14 31 chr9 9469668 9469704 -132801740 + MER47B DNA MER2_type 1 36 -2287 1888 116 4 0 chr9 9469704 9469962 -132801482 - AluSg SINE Alu -11 299 41 1714 155 0 15 chr9 9469962 9470233 -132801211 - AluSx SINE Alu -45 267 1 1978 202 14 31 chr9 9470233 9470620 -132800824 + MER47B DNA MER2_type 34 418 0 209 152 22 0 chr9 9470620 9470637 -132800807 + (CATATA)n Simple_repeat Simple_repeat 29 49 0 1944 117 14 21 chr9 9470684 9470975 -132800469 + AluSx SINE Alu 1 289 -23 369 0 0 0 chr9 9472368 9472409 -132799035 + (TG)n Simple_repeat Simple_repeat 2 42 0 282 319 92 17 chr9 9472866 9472985 -132798459 + L2 LINE L2 3144 3271 -1 250 282 103 136 chr9 9473553 9473883 -132797561 + L2 LINE L2 2954 3272 0 22 35 0 0 chr9 9474379 9474408 -132797036 + AT_rich Low_complexity Low_complexity 1 29 0 212 345 84 21 chr9 9478221 9478363 -132793081 + MIR3 SINE MIR 33 183 -25 23 0 0 0 chr9 9480370 9480393 -132791051 + AT_rich Low_complexity Low_complexity 1 23 0 180 306 69 69 chr9 9481879 9481951 -132789493 - L2 LINE L2 0 3313 3242 241 272 7 110 chr9 9483260 9483299 -132788145 + L2 LINE L2 2938 2979 -293 2170 95 3 3 chr9 9483299 9483629 -132787815 - AluSp SINE Alu 0 330 1 241 272 7 110 chr9 9483629 9483724 -132787720 + L2 LINE L2 2979 3059 -213 933 197 16 16 chr9 9483801 9483989 -132787455 + MER5A DNA MER1_type 1 188 -1 343 346 58 6 chr9 9485546 9485702 -132785742 - L2 LINE L2 -1 3271 3108 463 322 64 35 chr9 9487219 9487533 -132783911 + L1ME LINE L1 2979 3301 -2845 2346 90 3 0 chr9 9487541 9487842 -132783602 + AluY SINE Alu 1 302 -9 270 116 0 0 chr9 9487842 9487885 -132783559 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 462 188 111 8 chr9 9487887 9488004 -132783440 + FLAM_C SINE Alu 5 133 0 438 273 108 45 chr9 9488267 9488601 -132782843 + L1ME LINE L1 4905 5259 -887 444 285 57 44 chr9 9488627 9489115 -132782329 + L1ME LINE L1 5312 5803 -367 1739 141 4 15 chr9 9489135 9489397 -132782047 - MER1B DNA MER1_type -80 259 1 627 197 0 53 chr9 9489426 9489558 -132781886 - FLAM_A SINE Alu -8 125 1 1851 174 0 7 chr9 9489944 9490232 -132781212 + AluJb SINE Alu 1 286 -26 32 26 0 0 chr9 9490232 9490271 -132781173 + AT_rich Low_complexity Low_complexity 1 39 0 2572 121 3 5 chr9 9490795 9491166 -132780278 - THE1C LTR MaLR 0 375 6 23 33 0 0 chr9 9491357 9491387 -132780057 + AT_rich Low_complexity Low_complexity 1 30 0 257 313 80 0 chr9 9491832 9491944 -132779500 - MIR SINE MIR -21 241 121 28 0 0 26 chr9 9492075 9492094 -132779350 + AT_rich Low_complexity Low_complexity 1 19 -19 1997 133 3 0 chr9 9492094 9492379 -132779065 + AluSg SINE Alu 1 286 -24 28 0 0 26 chr9 9492379 9492398 -132779046 + AT_rich Low_complexity Low_complexity 19 38 0 25 51 0 0 chr9 9492834 9492873 -132778571 + AT_rich Low_complexity Low_complexity 1 39 0 2234 102 0 10 chr9 9492940 9493253 -132778191 + AluY SINE Alu 1 310 -1 24 32 0 0 chr9 9493389 9493420 -132778024 + AT_rich Low_complexity Low_complexity 1 31 0 298 324 29 0 chr9 9494932 9495034 -132776410 + MER5A DNA MER1_type 40 144 -45 1739 194 35 78 chr9 9496877 9497399 -132774045 - MLT1D LTR MaLR -3 502 4 219 375 94 31 chr9 9498895 9499151 -132772293 - L2 LINE L2 -184 3088 2817 206 247 143 137 chr9 9500084 9500266 -132771178 - L3 LINE CR1 -130 1447 1265 1921 127 69 30 chr9 9500563 9500924 -132770520 + THE1C LTR MaLR 1 375 0 2314 96 0 3 chr9 9500935 9501237 -132770207 - AluY SINE Alu -10 301 1 218 289 0 21 chr9 9503557 9503654 -132767790 + A-rich Low_complexity Low_complexity 2 96 0 22 0 0 0 chr9 9503937 9503959 -132767485 + AT_rich Low_complexity Low_complexity 1 22 0 1816 110 8 34 chr9 9504277 9504573 -132766871 + AluSx SINE Alu 34 322 0 2452 137 0 0 chr9 9505032 9505396 -132766048 + THE1B LTR MaLR 1 364 0 2241 82 26 7 chr9 9505688 9505992 -132765452 - AluSp SINE Alu -3 310 1 9674 193 25 6 chr9 9506002 9507768 -132763676 + L1M1 LINE L1 111 1911 -5654 21 0 0 0 chr9 9508602 9508623 -132762821 + AT_rich Low_complexity Low_complexity 1 21 0 259 254 132 35 chr9 9510153 9510267 -132761177 - L2 LINE L2 -6 3307 3183 339 355 74 31 chr9 9510744 9511000 -132760444 - L2 LINE L2 -757 2557 2291 382 307 106 5 chr9 9511609 9511798 -132759646 + MIR SINE MIR 49 256 -6 186 43 0 0 chr9 9512012 9512035 -132759409 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1361 166 73 7 chr9 9513082 9513384 -132758060 + L1MA8 LINE L1 5964 6285 -6 2098 126 0 7 chr9 9513437 9513739 -132757705 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr9 9515710 9515734 -132755710 + AT_rich Low_complexity Low_complexity 1 24 0 269 321 18 18 chr9 9516040 9516149 -132755295 + MIR SINE MIR 98 206 -56 423 242 87 60 chr9 9516261 9516410 -132755034 + MIR SINE MIR 109 261 -1 264 343 14 21 chr9 9516403 9516546 -132754898 - MIR SINE MIR -107 155 14 * 1825 166 6 13 chr9 9517497 9517811 -132753633 + AluJb SINE Alu 1 312 0 349 221 19 10 chr9 9517811 9517915 -132753529 + GA-rich Low_complexity Low_complexity 5 109 0 260 45 68 0 chr9 9518001 9518045 -132753399 + A-rich Low_complexity Low_complexity 1 47 0 * 270 125 0 0 chr9 9518043 9518091 -132753353 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 285 51 0 0 chr9 9518177 9518216 -132753228 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 429 304 88 21 chr9 9519647 9519841 -132751603 - L3 LINE CR1 -106 1471 1265 640 255 76 0 chr9 9520264 9520409 -132751035 - MER82 DNA MER2_type -25 628 473 1723 163 0 72 chr9 9524775 9524941 -132746503 - AluSx SINE Alu -16 296 162 303 49 0 0 chr9 9524941 9524982 -132746462 + (TG)n Simple_repeat Simple_repeat 2 42 0 1723 163 0 72 chr9 9524982 9525134 -132746310 - AluSx SINE Alu -150 162 1 1795 176 35 23 chr9 9525139 9525570 -132745874 - L1MA8 LINE L1 0 6291 5856 459 289 28 0 chr9 9527089 9527231 -132744213 - MER69 DNA AcHobo -2380 146 1 28 48 0 0 chr9 9527449 9527491 -132743953 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 9528037 9528058 -132743386 + AT_rich Low_complexity Low_complexity 1 21 0 231 296 112 40 chr9 9528628 9528753 -132742691 + L2 LINE L2 3139 3272 0 1380 197 10 48 chr9 9528931 9529240 -132742204 + AluJo SINE Alu 1 297 -15 270 274 147 0 chr9 9529241 9529336 -132742108 - L2 LINE L2 -13 3300 3192 220 224 0 0 chr9 9529635 9529684 -132741760 + (TAA)n Simple_repeat Simple_repeat 1 49 0 439 346 87 9 chr9 9529687 9529918 -132741526 - MIR SINE MIR 0 262 14 327 200 50 0 chr9 9530529 9530589 -132740855 - L2 LINE L2 -16 3256 3194 297 328 94 18 chr9 9530647 9530818 -132740626 - MIR SINE MIR -6 256 73 254 244 204 35 chr9 9531084 9531256 -132740188 - L2 LINE L2 -5 3308 3108 249 175 16 32 chr9 9531257 9531320 -132740124 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1203 249 97 45 chr9 9532538 9533032 -132738412 + MLT2B1 LTR ERVL 1 520 0 352 289 33 25 chr9 9533403 9533524 -132737920 + MIR3 SINE MIR 79 200 -8 28 0 0 0 chr9 9533575 9533603 -132737841 + AT_rich Low_complexity Low_complexity 1 28 0 202 340 41 31 chr9 9534701 9534798 -132736646 - MIR SINE MIR -78 130 33 354 23 0 0 chr9 9538196 9538239 -132733205 + (TG)n Simple_repeat Simple_repeat 2 44 0 316 300 0 18 chr9 9540990 9541100 -132730344 - L2 LINE L2 -16 3297 3190 213 66 115 0 chr9 9541106 9541167 -132730277 + (TA)n Simple_repeat Simple_repeat 2 69 0 29 60 0 0 chr9 9541487 9541537 -132729907 + AT_rich Low_complexity Low_complexity 1 50 0 432 359 32 14 chr9 9542216 9542436 -132729008 + MLT1K LTR MaLR 23 246 -342 273 298 72 53 chr9 9543718 9543980 -132727464 + L1ME4a LINE L1 5637 5903 -218 23 0 0 0 chr9 9544178 9544201 -132727243 + AT_rich Low_complexity Low_complexity 1 23 0 2155 104 0 0 chr9 9544900 9545215 -132726229 - AluSc SINE Alu 0 315 1 1571 197 7 0 chr9 9546006 9546296 -132725148 - AluJb SINE Alu -13 299 8 671 115 0 26 chr9 9546344 9546457 -132724987 + AluSp/q SINE Alu 204 313 0 234 81 0 0 chr9 9546621 9546658 -132724786 + (A)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chr9 9546755 9546787 -132724657 + AT_rich Low_complexity Low_complexity 1 32 0 356 86 0 17 chr9 9549417 9549475 -132721969 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 6125 183 37 71 chr9 9549670 9551075 -132720369 + MER52A LTR ERV1 399 1755 0 237 261 0 15 chr9 9551699 9551764 -132719680 + GA-rich Low_complexity Low_complexity 1 64 0 339 268 84 106 chr9 9552088 9552267 -132719177 + MER5B DNA MER1_type 4 178 0 229 351 77 36 chr9 9552573 9552741 -132718703 + L2 LINE L2 2918 3092 -180 373 248 97 31 chr9 9553606 9553832 -132717612 - L1ME LINE L1 -364 5757 5517 1717 184 7 0 chr9 9555996 9556289 -132715155 - AluJo SINE Alu -16 296 2 2294 81 17 7 chr9 9556325 9556622 -132714822 + AluSp SINE Alu 4 303 -10 764 194 90 0 chr9 9560068 9560223 -132711221 - MER20 DNA MER1_type -19 200 32 359 267 87 52 chr9 9562176 9562348 -132709096 + MER5A DNA MER1_type 8 185 -4 844 274 202 13 chr9 9562541 9562917 -132708527 + MER69 DNA AcHobo 1 447 -2079 424 254 42 0 chr9 9562897 9563015 -132708429 + MER69 DNA AcHobo 1917 2039 -487 * 1729 101 26 38 chr9 9563082 9563239 -132708205 - L1P4 LINE L1 -697 5477 5320 2371 95 0 3 chr9 9563239 9563543 -132707901 - AluSq SINE Alu -10 303 1 1729 101 26 38 chr9 9563543 9563805 -132707639 - L1P4 LINE L1 -854 5320 5058 21 36 0 0 chr9 9564003 9564031 -132707413 + AT_rich Low_complexity Low_complexity 1 28 0 193 200 60 0 chr9 9567073 9567123 -132704321 - MIR SINE MIR -93 169 117 258 156 0 0 chr9 9567990 9568035 -132703409 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 516 270 0 0 chr9 9568035 9568146 -132703298 - FLAM_A SINE Alu -22 120 10 279 0 0 0 chr9 9568378 9568409 -132703035 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2100 127 3 3 chr9 9569558 9569865 -132701579 - AluSx SINE Alu -5 307 1 2257 108 0 0 chr9 9573131 9573436 -132698008 + AluSq SINE Alu 1 305 -8 1354 148 44 109 chr9 9573504 9573829 -132697615 + MER46B DNA MER2_type 3 176 -2555 188 0 74 0 chr9 9573829 9573856 -132697588 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1354 148 44 109 chr9 9573856 9573914 -132697530 + MER46B DNA MER2_type 176 236 0 270 154 0 0 chr9 9573978 9574017 -132697427 + MER57A LTR ERV1 295 333 -70 27 0 0 0 chr9 9574019 9574046 -132697398 + AT_rich Low_complexity Low_complexity 1 27 0 503 283 21 26 chr9 9576241 9576432 -132695012 - L1MA9 LINE L1 -173 6139 5950 323 148 0 0 chr9 9576498 9576552 -132694892 - L1MA9 LINE L1 -375 5937 5884 22 0 0 0 chr9 9577306 9577328 -132694116 + AT_rich Low_complexity Low_complexity 1 22 0 921 204 0 52 chr9 9579862 9580092 -132691352 - MER20 DNA MER1_type -1 218 1 2324 85 0 0 chr9 9580264 9580558 -132690886 + AluSc SINE Alu 13 306 -3 396 286 111 20 chr9 9581249 9581448 -132689996 + MIR SINE MIR 44 260 -2 236 98 0 24 chr9 9581570 9581611 -132689833 + (CA)n Simple_repeat Simple_repeat 2 41 0 225 0 0 0 chr9 9581613 9581638 -132689806 + (A)n Simple_repeat Simple_repeat 1 25 0 1147 147 5 0 chr9 9582447 9582631 -132688813 - AluSq SINE Alu -2 311 127 2197 87 13 13 chr9 9582636 9582948 -132688496 - AluSp SINE Alu -1 312 1 2822 139 23 12 chr9 9583273 9583754 -132687690 + L1PA15 LINE L1 5673 6158 -7 25 51 0 0 chr9 9586197 9586236 -132685208 + AT_rich Low_complexity Low_complexity 1 39 0 375 268 12 24 chr9 9586640 9586808 -132684636 + (CATATA)n Simple_repeat Simple_repeat 3 168 0 268 138 447 0 chr9 9588457 9588551 -132682893 + L1MA4 LINE L1 6164 6299 -1 23 33 0 0 chr9 9588610 9588640 -132682804 + AT_rich Low_complexity Low_complexity 1 30 0 872 244 65 98 chr9 9589719 9590289 -132681155 + MLT1G LTR MaLR 40 590 0 408 284 168 10 chr9 9590339 9590536 -132680908 - MIR SINE MIR -27 235 8 26 0 0 0 chr9 9591904 9591930 -132679514 + AT_rich Low_complexity Low_complexity 1 26 0 359 329 64 7 chr9 9592597 9592737 -132678707 - MIR SINE MIR -78 184 37 2440 73 3 0 chr9 9594357 9594660 -132676784 + AluY SINE Alu 1 304 -7 296 230 23 46 chr9 9594886 9594973 -132676471 + MIR3 SINE MIR 118 202 -6 29 0 0 0 chr9 9595277 9595306 -132676138 + AT_rich Low_complexity Low_complexity 1 29 0 2261 120 20 3 chr9 9595441 9595790 -132675654 - THE1A LTR MaLR 0 355 1 1997 150 3 10 chr9 9595898 9596211 -132675233 + AluSx SINE Alu 1 311 -1 2121 117 0 7 chr9 9596318 9596617 -132674827 + AluY SINE Alu 1 297 -14 306 217 23 132 chr9 9597419 9597548 -132673896 + MER117 DNA MER1_type 57 171 -26 580 268 108 10 chr9 9598278 9598472 -132672972 - MLT1J2 LTR MaLR -15 435 223 337 311 16 8 chr9 9600213 9600335 -132671109 + L1M4 LINE L1 3339 3461 -2685 898 272 92 65 chr9 9600991 9601586 -132669858 - MLT1L LTR MaLR -2 613 3 260 303 193 29 chr9 9602413 9602687 -132668757 - L2 LINE L2 0 3313 2995 242 330 18 18 chr9 9602745 9602857 -132668587 - L2 LINE L2 -446 2868 2757 26 0 0 0 chr9 9603460 9603486 -132667958 + AT_rich Low_complexity Low_complexity 1 26 0 2293 119 0 0 chr9 9603490 9603793 -132667651 - AluSx SINE Alu -7 305 3 252 100 0 0 chr9 9603815 9603855 -132667589 + (TG)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr9 9604999 9605026 -132666418 + AT_rich Low_complexity Low_complexity 1 27 0 2179 96 0 0 chr9 9606974 9607245 -132664199 + AluSg SINE Alu 22 292 -18 2174 83 0 7 chr9 9607425 9607713 -132663731 + AluSp SINE Alu 1 286 -27 246 132 0 0 chr9 9608476 9608514 -132662930 - L2 LINE L2 -4 3268 3231 2165 76 21 14 chr9 9608688 9608979 -132662465 - AluSg SINE Alu -17 293 1 1257 308 78 54 chr9 9609416 9610212 -132661232 + L2 LINE L2 1795 2609 -705 325 258 0 22 chr9 9610407 9610496 -132660948 + GA-rich Low_complexity Low_complexity 2 88 0 1490 113 66 51 chr9 9610767 9611024 -132660420 + AluSg SINE Alu 49 309 -1 1096 116 24 0 chr9 9611303 9611467 -132659977 - AluSg/x SINE Alu -19 293 126 3972 161 19 48 chr9 9614295 9614464 -132656980 + L1MA8 LINE L1 5442 5614 -677 2360 96 0 16 chr9 9614464 9614777 -132656667 + AluSq SINE Alu 1 308 -5 3972 161 19 48 chr9 9614777 9615305 -132656139 + L1MA8 LINE L1 5614 6112 -179 2458 84 0 3 chr9 9615305 9615616 -132655828 + AluY SINE Alu 1 310 -1 3972 161 19 48 chr9 9615616 9615790 -132655654 + L1MA8 LINE L1 6112 6289 -2 431 312 89 46 chr9 9615974 9616211 -132655233 + MIR SINE MIR 13 259 -3 1972 153 3 0 chr9 9616407 9616708 -132654736 + AluJb SINE Alu 1 302 -10 24 32 0 0 chr9 9617369 9617400 -132654044 + AT_rich Low_complexity Low_complexity 1 31 0 364 277 23 39 chr9 9617660 9617790 -132653654 - MER5B DNA MER1_type 0 178 51 725 227 305 32 chr9 9617845 9618343 -132653101 + L1MC3 LINE L1 5684 6317 -1468 2257 71 0 4 chr9 9618810 9619091 -132652353 - AluSq SINE Alu -33 280 1 237 33 0 0 chr9 9620379 9620409 -132651035 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 837 230 56 136 chr9 9620621 9621069 -132650375 + L2 LINE L2 2852 3263 -50 21 0 0 0 chr9 9621537 9621558 -132649886 + AT_rich Low_complexity Low_complexity 1 21 0 367 336 9 9 chr9 9621558 9621674 -132649770 - MIR SINE MIR -144 118 3 272 75 0 0 chr9 9622169 9622209 -132649235 + MADE1 DNA Mariner 41 80 0 269 333 115 10 chr9 9622696 9622888 -132648556 + MER102b DNA MER1_type 105 316 -25 1077 190 109 16 chr9 9622989 9623236 -132648208 + AluJb SINE Alu 34 303 -9 302 354 104 17 chr9 9623434 9623674 -132647770 + L2 LINE L2 2496 2756 -558 354 345 53 18 chr9 9623675 9623846 -132647598 - MER5B DNA MER1_type -1 177 1 933 239 52 0 chr9 9625617 9625830 -132645614 + MER58A DNA MER1_type 1 224 0 201 74 0 0 chr9 9625920 9625947 -132645497 + (A)n Simple_repeat Simple_repeat 1 27 0 565 288 96 34 chr9 9626069 9626578 -132644866 - MLT1H LTR MaLR 0 555 1 21 0 0 0 chr9 9627111 9627132 -132644312 + AT_rich Low_complexity Low_complexity 1 21 0 2159 139 0 3 chr9 9627219 9627528 -132643916 + AluSx SINE Alu 1 308 -4 40 49 0 0 chr9 9627581 9627642 -132643802 + AT_rich Low_complexity Low_complexity 1 61 0 479 326 78 10 chr9 9627658 9627851 -132643593 - MIR SINE MIR 0 262 57 345 161 37 25 chr9 9628014 9628095 -132643349 + MER20 DNA MER1_type 1 82 -137 387 0 0 0 chr9 9628196 9628239 -132643205 + (TG)n Simple_repeat Simple_repeat 2 44 0 314 281 52 85 chr9 9629225 9629495 -132641949 + L2 LINE L2 2883 3143 -170 189 330 70 62 chr9 9630455 9630713 -132640731 + L2 LINE L2 2563 2822 -492 1594 172 0 14 chr9 9630741 9631020 -132640424 + AluJb SINE Alu 17 291 -21 754 200 16 11 chr9 9631053 9631243 -132640201 + L1MC4a LINE L1 7618 7808 0 22 35 0 0 chr9 9631347 9631376 -132640068 + AT_rich Low_complexity Low_complexity 1 29 0 345 342 17 8 chr9 9631383 9631500 -132639944 + L2 LINE L2 3189 3306 -7 601 313 84 13 chr9 9631694 9631921 -132639523 - MIR SINE MIR 0 262 20 363 73 0 0 chr9 9632083 9632138 -132639306 + (CA)n Simple_repeat Simple_repeat 2 56 0 909 120 15 0 chr9 9632378 9632511 -132638933 + AluJb SINE Alu 1 135 -177 417 109 0 0 chr9 9632656 9632720 -132638724 + (TA)n Simple_repeat Simple_repeat 2 65 0 1322 155 3 123 chr9 9632724 9633066 -132638378 + AluJo SINE Alu 2 302 0 770 219 26 0 chr9 9633704 9633891 -132637553 - AluJo SINE Alu 0 319 129 501 82 0 12 chr9 9633898 9633983 -132637461 - L1MB8 LINE L1 -2 6176 6093 2280 91 0 7 chr9 9634116 9634413 -132637031 + AluSp SINE Alu 1 295 -18 807 171 0 0 chr9 9634524 9634647 -132636797 - AluJo SINE Alu -188 124 2 2044 128 7 0 chr9 9634853 9635143 -132636301 + AluSx SINE Alu 6 297 -15 189 159 159 45 chr9 9635611 9635655 -132635789 + L2 LINE L2 3216 3264 -8 438 284 28 103 chr9 9635673 9635955 -132635489 - MIR SINE MIR 0 262 2 2458 72 0 0 chr9 9636125 9636431 -132635013 + AluY SINE Alu 1 306 -5 197 135 0 27 chr9 9640788 9640825 -132630619 - L2 LINE L2 -13 3300 3265 343 254 36 18 chr9 9641157 9641267 -132630177 - MER5A DNA MER1_type -7 182 71 2065 155 7 0 chr9 9641284 9641594 -132629850 - AluSx SINE Alu 0 312 1 467 118 15 0 chr9 9641638 9641706 -132629738 - MER5A DNA MER1_type -116 73 5 2177 122 3 7 chr9 9641778 9642082 -132629362 + AluSx SINE Alu 1 303 -9 2057 124 0 7 chr9 9643808 9644099 -132627345 - AluSg SINE Alu -21 289 1 689 245 32 68 chr9 9644566 9644920 -132626524 + L1MC5 LINE L1 6730 7050 -911 677 183 167 6 chr9 9645504 9645684 -132625760 + MER3 DNA MER1_type 1 209 0 2018 133 98 21 chr9 9645861 9646199 -132625245 + THE1B LTR MaLR 1 364 0 268 159 0 0 chr9 9646282 9646326 -132625118 + 5S rRNA rRNA 1 44 -77 2202 129 0 22 chr9 9647722 9648039 -132623405 - AluSg SINE Alu 0 310 1 708 158 44 27 chr9 9648376 9648559 -132622885 - L1MA8 LINE L1 0 6291 6106 602 250 17 28 chr9 9649038 9649214 -132622230 + MER20 DNA MER1_type 46 219 0 5858 119 15 18 chr9 9649721 9649942 -132621502 + L1PB1 LINE L1 4958 5178 -973 339 25 0 0 chr9 9649942 9649982 -132621462 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5858 119 15 18 chr9 9649982 9650956 -132620488 + L1PB1 LINE L1 5178 6150 -1 250 342 71 27 chr9 9651261 9651445 -132619999 - MIR3 SINE MIR -1 207 16 261 0 0 0 chr9 9651935 9651964 -132619480 + (TC)n Simple_repeat Simple_repeat 2 30 0 1550 185 18 4 chr9 9651964 9652240 -132619204 - AluJo SINE Alu -28 284 5 828 169 0 0 chr9 9652862 9652992 -132618452 + FLAM_C SINE Alu 1 130 -3 4940 70 9 0 chr9 9653374 9654036 -132617408 + HERV17 LTR ERV1 5352 6019 -2607 285 51 0 0 chr9 9654029 9654068 -132617376 + HERV17 LTR ERV1 7510 7548 -1078 * 2229 52 10 0 chr9 9654058 9654347 -132617097 + HERV17 LTR ERV1 8335 8626 0 2392 40 28 31 chr9 9654347 9654674 -132616770 + LTR17 LTR ERV1 1 326 -454 255 125 0 0 chr9 9654674 9654714 -132616730 + (A)n Simple_repeat Simple_repeat 1 40 0 1795 166 3 7 chr9 9654780 9655076 -132616368 + AluSp SINE Alu 1 295 -18 242 168 74 11 chr9 9655160 9655255 -132616189 - Charlie7 DNA MER1_type -74 2538 2438 2000 136 3 23 chr9 9655329 9655639 -132615805 - AluSx SINE Alu -6 306 3 2144 115 0 0 chr9 9655991 9656279 -132615165 - AluSx SINE Alu -24 288 1 421 301 113 58 chr9 9656302 9656754 -132614690 - L2 LINE L2 -175 3138 2653 201 74 0 0 chr9 9657224 9657251 -132614193 + (A)n Simple_repeat Simple_repeat 1 27 0 883 254 53 82 chr9 9657698 9657899 -132613545 + MLT1H LTR MaLR 64 269 -280 4445 59 0 4 chr9 9657899 9658455 -132612989 + MER41A LTR ERV1 1 554 0 883 254 53 82 chr9 9658455 9658754 -132612690 + MLT1H LTR MaLR 269 549 0 1678 250 69 30 chr9 9659525 9659684 -132611760 + L1ME LINE L1 4381 4532 -1614 2193 107 0 0 chr9 9659684 9659974 -132611470 + AluSx SINE Alu 1 290 -22 1678 250 69 30 chr9 9659974 9660645 -132610799 + L1ME LINE L1 4532 5243 -903 878 273 92 30 chr9 9660709 9661069 -132610375 + L1ME LINE L1 5325 5722 -448 2329 91 3 0 chr9 9661069 9661367 -132610077 + AluSq SINE Alu 1 299 -14 878 273 92 30 chr9 9661367 9661472 -132609972 + L1ME LINE L1 5722 5819 -351 278 257 73 37 chr9 9661947 9662056 -132609388 + MIR SINE MIR 17 129 -79 212 279 39 84 chr9 9662031 9662185 -132609259 + L2 LINE L2 3081 3227 -86 * 336 274 161 0 chr9 9662818 9662942 -132608502 + MIR SINE MIR 49 192 -70 1531 198 7 7 chr9 9663517 9663810 -132607634 - AluJb SINE Alu -19 293 1 2044 135 0 0 chr9 9663873 9664154 -132607290 + AluSx SINE Alu 1 281 -31 907 169 46 62 chr9 9664364 9664559 -132606885 - AluJb SINE Alu -4 308 117 526 141 0 0 chr9 9664659 9664737 -132606707 + AluSg/x SINE Alu 207 284 -26 482 119 12 0 chr9 9665196 9665280 -132606164 + (TA)n Simple_repeat Simple_repeat 1 85 0 868 201 46 0 chr9 9665792 9665986 -132605458 - MER105 DNA DNA -1 203 1 500 65 0 0 chr9 9666353 9666415 -132605029 - AluY SINE Alu -16 296 235 1306 81 0 0 chr9 9666416 9666576 -132604868 - AluY SINE Alu -151 160 1 1659 169 0 72 chr9 9666624 9666943 -132604501 - AluJb SINE Alu -16 296 1 214 244 0 47 chr9 9667185 9667271 -132604173 + T-rich Low_complexity Low_complexity 1 82 0 985 114 0 0 chr9 9667649 9667781 -132603663 - AluSx SINE Alu -139 173 42 273 29 0 0 chr9 9668186 9668220 -132603224 + (TG)n Simple_repeat Simple_repeat 1 34 0 2132 117 3 3 chr9 9669778 9670078 -132601366 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr9 9671185 9671207 -132600237 + (T)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chr9 9671397 9671423 -132600021 + AT_rich Low_complexity Low_complexity 1 26 0 267 365 19 10 chr9 9671506 9671610 -132599834 + MER5A DNA MER1_type 72 176 -13 184 280 227 8 chr9 9671716 9671848 -132599596 - MIR3 SINE MIR -11 197 37 222 281 61 24 chr9 9672079 9672161 -132599283 - MIR SINE MIR -115 147 63 295 211 14 0 chr9 9673353 9673424 -132598020 - Charlie8 DNA MER1_type -2272 145 74 338 289 13 39 chr9 9673582 9673738 -132597706 - LTR16C LTR ERVL -244 247 96 192 238 0 0 chr9 9674961 9675024 -132596420 + (TA)n Simple_repeat Simple_repeat 2 64 0 454 391 55 19 chr9 9675550 9675972 -132595472 + L3 LINE CR1 284 720 -857 1233 180 0 21 chr9 9676156 9676395 -132595049 - AluJo SINE Alu -78 234 1 292 301 159 51 chr9 9676658 9676834 -132594610 + L2 LINE L2 3068 3262 -10 194 277 15 46 chr9 9679091 9679156 -132592288 - L2 LINE L2 -37 3276 3214 993 168 19 93 chr9 9680139 9680353 -132591091 + AluJo SINE Alu 85 282 -30 27 100 0 0 chr9 9680995 9681085 -132590359 + AT_rich Low_complexity Low_complexity 1 90 0 1969 150 3 7 chr9 9681794 9682088 -132589356 + AluSx SINE Alu 1 293 -19 210 167 37 19 chr9 9682104 9682158 -132589286 + (TATAA)n Simple_repeat Simple_repeat 3 57 0 1909 137 18 0 chr9 9683080 9683400 -132588044 + AluSg SINE Alu 1 325 0 1644 201 67 93 chr9 9683725 9684307 -132587137 + MLT1F1 LTR MaLR 1 567 0 323 319 37 37 chr9 9684344 9684507 -132586937 + MIR3 SINE MIR 14 176 -32 193 277 12 72 chr9 9684650 9684695 -132586749 + L3 LINE CR1 1497 1536 -41 4586 164 33 9 chr9 9684695 9685540 -132585904 + MER6 DNA MER2_type 1 865 0 193 277 12 72 chr9 9685540 9685577 -132585867 + L3 LINE CR1 1536 1574 -3 2366 94 3 0 chr9 9685682 9685980 -132585464 - AluSq SINE Alu -13 300 2 329 319 76 14 chr9 9685984 9686128 -132585316 + L1MC/D LINE L1 5607 5759 -2049 696 203 21 112 chr9 9686212 9686399 -132585045 + MER5B DNA MER1_type 8 177 -1 816 199 0 53 chr9 9686681 9686852 -132584592 + AluJo SINE Alu 5 166 -146 1623 167 7 14 chr9 9686853 9687129 -132584315 + AluJb SINE Alu 21 294 -18 22 0 0 0 chr9 9687683 9687705 -132583739 + AT_rich Low_complexity Low_complexity 1 22 0 2116 115 3 13 chr9 9688563 9688877 -132582567 + AluSx SINE Alu 1 311 -1 2346 66 0 7 chr9 9689463 9689750 -132581694 + AluY SINE Alu 2 286 -25 412 231 74 133 chr9 9689966 9690169 -132581275 - MIR SINE MIR 0 262 72 26 30 0 0 chr9 9690882 9690915 -132580529 + AT_rich Low_complexity Low_complexity 1 33 0 2078 121 7 0 chr9 9690937 9691226 -132580218 + AluSx SINE Alu 1 291 -21 516 284 35 12 chr9 9691739 9691908 -132579536 - MIR SINE MIR -74 188 16 26 50 0 0 chr9 9691966 9692006 -132579438 + AT_rich Low_complexity Low_complexity 1 40 0 246 32 0 0 chr9 9692831 9692862 -132578582 + (TC)n Simple_repeat Simple_repeat 1 31 0 2149 93 4 0 chr9 9693240 9693518 -132577926 - AluSg1 SINE Alu -30 279 1 374 264 24 16 chr9 9694244 9694367 -132577077 - MIR SINE MIR -78 130 30 215 285 98 24 chr9 9694448 9694571 -132576873 + L2 LINE L2 2629 2760 -554 475 319 109 22 chr9 9694653 9695010 -132576434 + L2 LINE L2 1983 2370 -944 992 143 22 28 chr9 9695032 9695214 -132576230 + AluJb SINE Alu 108 288 -24 267 20 0 78 chr9 9695215 9695266 -132576178 + (GGAAA)n Simple_repeat Simple_repeat 1 47 0 3850 121 4 0 chr9 9695286 9695838 -132575606 - MER41A LTR ERV1 0 554 1 7819 129 37 3 chr9 9695838 9697135 -132574309 - MER41A-int LTR ERV1 -2 5944 4604 3311 110 24 0 chr9 9697141 9697651 -132573793 - MER41A LTR ERV1 -32 522 1 596 348 92 20 chr9 9697748 9698366 -132573078 + L2 LINE L2 2589 3256 -16 282 345 43 75 chr9 9698483 9698590 -132572854 + L2 LINE L2 2933 3042 -230 211 53 26 26 chr9 9698590 9698628 -132572816 + (CA)n Simple_repeat Simple_repeat 2 39 0 282 345 43 75 chr9 9698628 9698775 -132572669 + L2 LINE L2 3042 3179 -93 2175 131 0 0 chr9 9698881 9699179 -132572265 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 9699465 9699486 -132571958 + AT_rich Low_complexity Low_complexity 1 21 0 1721 187 25 8 chr9 9699776 9700129 -132571315 + MLT1A1 LTR MaLR 5 363 -2 1215 189 41 78 chr9 9700665 9701052 -132570392 - L1ME2 LINE L1 -1 6163 5791 386 305 102 11 chr9 9701276 9701463 -132569981 + MIR SINE MIR 1 204 -58 860 265 12 31 chr9 9701582 9701839 -132569605 - MIR SINE MIR -7 255 4 234 333 0 26 chr9 9702614 9702692 -132568752 - MIR3 SINE MIR -24 184 109 236 277 12 12 chr9 9703662 9703745 -132567699 - MIR SINE MIR -44 218 136 1630 186 0 18 chr9 9703774 9704054 -132567390 - AluJo SINE Alu -37 275 1 293 267 80 0 chr9 9704055 9704130 -132567314 - MIR SINE MIR -115 147 67 205 262 0 0 chr9 9704879 9704921 -132566523 + polypyrimidine Low_complexity Low_complexity 4 45 0 23 0 0 0 chr9 9705074 9705097 -132566347 + AT_rich Low_complexity Low_complexity 1 23 0 1983 114 10 10 chr9 9705099 9705389 -132566055 - AluSx SINE Alu -22 290 1 331 313 27 27 chr9 9705787 9705899 -132565545 - MIR SINE MIR -63 145 34 4178 79 2 2 chr9 9705982 9706536 -132564908 - MER41A LTR ERV1 0 554 1 216 325 76 45 chr9 9707828 9707985 -132563459 - MIR SINE MIR -75 187 26 270 330 54 9 chr9 9708096 9708208 -132563236 + L2 LINE L2 3197 3313 0 688 163 16 8 chr9 9708832 9708955 -132562489 + FRAM SINE Alu 43 166 -10 253 344 82 41 chr9 9708968 9709090 -132562354 - L2 LINE L2 -19 3253 3127 24 0 0 0 chr9 9709599 9709623 -132561821 + AT_rich Low_complexity Low_complexity 1 24 0 291 146 21 0 chr9 9709631 9709679 -132561765 - U7 snRNA snRNA -1 62 14 23 54 0 0 chr9 9709916 9709953 -132561491 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr9 9710511 9710533 -132560911 + AT_rich Low_complexity Low_complexity 1 22 0 1975 120 7 14 chr9 9711357 9711649 -132559795 + AluSx SINE Alu 1 290 -22 797 188 0 0 chr9 9712182 9712315 -132559129 + FLAM_A SINE Alu 1 133 0 1590 221 127 43 chr9 9713252 9713741 -132557703 - MLT1F LTR MaLR -9 533 4 196 354 31 0 chr9 9713758 9713823 -132557621 + MIR SINE MIR 67 133 -75 237 315 14 0 chr9 9713969 9714042 -132557402 + GA-rich Low_complexity Low_complexity 4 77 0 753 115 0 0 chr9 9715188 9715301 -132556143 + AluSg/x SINE Alu 190 302 -8 2386 101 0 0 chr9 9715303 9715610 -132555834 + AluSg SINE Alu 3 309 -1 653 222 31 25 chr9 9715823 9715985 -132555459 + MER3 DNA MER1_type 1 163 -46 213 253 152 25 chr9 9716176 9716255 -132555189 - L2 LINE L2 0 3313 3225 1107 115 0 0 chr9 9716256 9716413 -132555031 + AluSg/x SINE Alu 150 306 -6 202 230 27 68 chr9 9716413 9716487 -132554957 - L2 LINE L2 -85 3228 3158 1690 200 3 0 chr9 9716509 9716804 -132554640 + AluJo SINE Alu 1 296 -16 483 230 37 12 chr9 9716901 9717062 -132554382 - L1M4 LINE L1 -1033 5113 4949 2428 75 3 28 chr9 9717536 9717856 -132553588 + AluSp SINE Alu 1 312 -1 256 275 0 46 chr9 9718382 9718491 -132552953 + CT-rich Low_complexity Low_complexity 4 107 0 257 237 26 26 chr9 9718884 9718960 -132552484 + MARNA DNA Mariner 460 535 -51 325 142 9 8 chr9 9718975 9719200 -132552244 + AluJo SINE Alu 1 294 -8 2282 96 0 16 chr9 9719398 9719711 -132551733 + AluSx SINE Alu 3 310 -2 333 0 0 0 chr9 9720040 9720077 -132551367 + (CA)n Simple_repeat Simple_repeat 2 38 0 409 326 54 33 chr9 9722512 9722696 -132548748 + MIR SINE MIR 49 236 -26 2309 84 7 7 chr9 9723239 9723538 -132547906 + AluSg SINE Alu 1 299 -11 899 108 7 0 chr9 9723658 9723797 -132547647 + L1MA8 LINE L1 6021 6160 -131 704 136 179 0 chr9 9723799 9723961 -132547483 + L1MA8 LINE L1 6079 6269 -22 488 325 12 0 chr9 9727230 9727399 -132544045 - MIR SINE MIR -26 236 66 1514 136 31 19 chr9 9728891 9729149 -132542295 + AluJb SINE Alu 37 297 -15 417 116 64 23 chr9 9729170 9729343 -132542101 + (TA)n Simple_repeat Simple_repeat 1 180 0 1611 176 38 3 chr9 9729543 9729832 -132541612 + AluJb SINE Alu 1 299 -13 892 142 0 0 chr9 9730306 9730433 -132541011 - FLAM_C SINE Alu -16 127 1 427 159 0 0 chr9 9730479 9730548 -132540896 + L1PA16 LINE L1 6089 6157 -9 2544 65 3 0 chr9 9731301 9731607 -132539837 + AluSp SINE Alu 1 307 -6 222 170 208 0 chr9 9731985 9732038 -132539406 - MIR SINE MIR -111 151 88 367 354 76 8 chr9 9732201 9732543 -132538901 - L2 LINE L2 -221 3051 2688 3453 218 48 75 chr9 9732543 9733475 -132537969 + L1MEc LINE L1 36 933 -5463 1518 164 25 0 chr9 9733475 9733719 -132537725 - AluJo SINE Alu -13 299 50 3453 218 48 75 chr9 9733719 9733935 -132537509 + L1MEc LINE L1 933 1153 -5243 225 0 0 0 chr9 9733973 9733998 -132537446 + (TTG)n Simple_repeat Simple_repeat 2 26 0 887 68 38 8 chr9 9734027 9734159 -132537285 - L1MA3 LINE L1 -1 6304 6169 21 0 0 0 chr9 9734297 9734318 -132537126 + AT_rich Low_complexity Low_complexity 1 21 0 201 180 0 0 chr9 9735151 9735201 -132536243 + CT-rich Low_complexity Low_complexity 1 50 0 288 0 0 0 chr9 9736091 9736123 -132535321 + (CA)n Simple_repeat Simple_repeat 2 33 0 416 258 32 39 chr9 9736921 9737076 -132534368 - MIR SINE MIR 0 262 109 476 276 32 101 chr9 9737786 9737894 -132533550 + L2 LINE L2 3027 3141 -172 1838 154 6 28 chr9 9737894 9738212 -132533232 - AluJb SINE Alu 0 312 2 476 276 32 101 chr9 9738212 9738411 -132533033 + L2 LINE L2 3141 3313 0 2054 75 0 4 chr9 9738963 9739218 -132532226 - AluSc SINE Alu -2 307 54 2110 108 38 0 chr9 9739401 9739689 -132531755 - AluSx SINE Alu -12 300 2 1500 214 20 17 chr9 9739858 9740177 -132531267 - AluJb SINE Alu 0 312 1 2122 107 4 0 chr9 9741676 9742000 -132529444 - AluSx SINE Alu 0 325 1 2268 123 51 14 chr9 9742560 9742911 -132528533 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 9743803 9743826 -132527618 + AT_rich Low_complexity Low_complexity 1 23 0 2162 102 3 0 chr9 9744105 9744398 -132527046 + AluSx SINE Alu 1 294 -18 303 242 121 0 chr9 9745322 9745421 -132526023 - MER94 DNA DNA -23 111 1 609 230 54 7 chr9 9745841 9745989 -132525455 + MER3 DNA MER1_type 2 156 -53 197 266 165 25 chr9 9746250 9746329 -132525115 + MIR3 SINE MIR 93 182 -26 27 0 0 0 chr9 9748547 9748574 -132522870 + AT_rich Low_complexity Low_complexity 1 27 0 475 308 66 85 chr9 9748731 9749360 -132522084 - L2 LINE L2 -41 3231 2635 1581 162 0 46 chr9 9750696 9750980 -132520464 - AluJo SINE Alu 0 312 42 363 300 34 11 chr9 9751100 9751247 -132520197 + MIR SINE MIR 6 152 -64 241 328 16 55 chr9 9751355 9751483 -132519961 + MIR SINE MIR 132 254 -8 1341 103 5 0 chr9 9751678 9751862 -132519582 - AluY SINE Alu -7 304 120 1495 41 0 0 chr9 9751862 9752031 -132519413 - AluY SINE Alu -140 171 3 364 303 0 18 chr9 9754246 9754355 -132517089 - MIR SINE MIR -108 154 48 21 0 0 0 chr9 9755528 9755549 -132515895 + AT_rich Low_complexity Low_complexity 1 21 0 6574 48 22 0 chr9 9756351 9757182 -132514262 + L1PA7 LINE L1 5306 6154 0 474 252 23 8 chr9 9757315 9757446 -132513998 + MIR3 SINE MIR 70 202 -6 180 398 11 0 chr9 9757838 9757926 -132513518 - L2 LINE L2 -44 3228 3140 186 262 0 0 chr9 9757992 9758034 -132513410 + L2 LINE L2 3256 3297 -16 371 329 29 61 chr9 9758102 9758348 -132513096 - L2 LINE L2 -196 3076 2839 24 0 0 0 chr9 9758526 9758550 -132512894 + AT_rich Low_complexity Low_complexity 1 24 0 684 191 14 7 chr9 9759060 9759207 -132512237 + L1MA3 LINE L1 6158 6305 0 421 343 77 0 chr9 9759859 9760028 -132511416 + L2 LINE L2 2872 3053 -219 238 244 215 15 chr9 9760522 9760657 -132510787 + MIR SINE MIR 52 213 -49 403 283 6 24 chr9 9760995 9761161 -132510283 + CT-rich Low_complexity Low_complexity 2 164 0 210 71 0 0 chr9 9761164 9761192 -132510252 + (T)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr9 9765322 9765347 -132506097 + (T)n Simple_repeat Simple_repeat 1 25 0 2044 108 16 32 chr9 9765397 9765713 -132505731 - AluSq SINE Alu -2 311 1 249 108 0 0 chr9 9766831 9766868 -132504576 + (TG)n Simple_repeat Simple_repeat 1 37 0 1985 126 4 0 chr9 9767408 9767685 -132503759 + AluSx SINE Alu 22 299 -13 262 186 23 23 chr9 9767963 9768049 -132503395 + (CATG)n Simple_repeat Simple_repeat 2 87 0 459 182 36 24 chr9 9768087 9768252 -132503192 + (CATG)n Simple_repeat Simple_repeat 1 167 0 1770 161 21 3 chr9 9768335 9768621 -132502823 + AluSx SINE Alu 1 291 -21 12442 86 9 120 chr9 9768757 9770401 -132501043 - L1P LINE L1 -1116 5030 3746 7467 39 0 2 chr9 9770401 9772084 -132499360 - L1PA5 LINE L1 -9 6145 4465 12442 86 9 120 chr9 9772084 9772897 -132498547 - L1P LINE L1 -2400 3746 2845 6110 100 8 0 chr9 9772893 9773762 -132497682 - L1P3 LINE L1 -5584 877 2 * 198 0 0 0 chr9 9773773 9773795 -132497649 + (T)n Simple_repeat Simple_repeat 1 22 0 1662 62 40 22 chr9 9774020 9774246 -132497198 + MER30 DNA MER1_type 1 230 0 1982 120 0 0 chr9 9774336 9774649 -132496795 - AluSx SINE Alu 0 313 1 272 330 42 25 chr9 9774909 9775027 -132496417 + MER5B DNA MER1_type 20 139 -39 218 266 107 130 chr9 9774914 9775030 -132496414 - MER5A DNA MER1_type -24 165 53 * 2260 124 0 0 chr9 9775030 9775329 -132496115 - AluSx SINE Alu -13 299 1 218 266 107 130 chr9 9775329 9775381 -132496063 - MER5A DNA MER1_type -136 53 1 1977 93 0 99 chr9 9776174 9776498 -132494946 - AluSc SINE Alu -17 292 1 2334 103 0 0 chr9 9776504 9776877 -132494567 - AluSx SINE Alu 0 373 1 23 0 0 0 chr9 9777591 9777614 -132493830 + AT_rich Low_complexity Low_complexity 1 23 0 313 303 33 49 chr9 9778591 9778835 -132492609 + L2 LINE L2 2090 2329 -985 864 82 0 0 chr9 9779130 9779265 -132492179 + (TA)n Simple_repeat Simple_repeat 2 136 0 2275 95 34 0 chr9 9779639 9779934 -132491510 + AluSx SINE Alu 1 305 -7 237 386 44 0 chr9 9780669 9780783 -132490661 - MIR SINE MIR -20 242 124 314 252 115 43 chr9 9781412 9781551 -132489893 - MIR3 SINE MIR -23 185 37 180 0 0 0 chr9 9781827 9781847 -132489597 + (TG)n Simple_repeat Simple_repeat 2 21 0 201 178 22 22 chr9 9781847 9781883 -132489561 + GA-rich Low_complexity Low_complexity 7 45 0 1156 321 147 29 chr9 9781903 9782629 -132488815 + L2 LINE L2 1992 2803 -511 182 128 26 0 chr9 9782688 9782727 -132488717 + (TA)n Simple_repeat Simple_repeat 2 41 0 319 265 76 53 chr9 9782807 9782939 -132488505 + L2 LINE L2 3178 3312 -1 21 71 0 0 chr9 9783741 9783783 -132487661 + AT_rich Low_complexity Low_complexity 1 42 0 5058 175 16 4 chr9 9783977 9785204 -132486240 + L1PA16 LINE L1 4921 6166 0 576 312 153 14 chr9 9785699 9786064 -132485380 + L3b LINE CR1 1102 1517 -66 36 0 0 0 chr9 9786299 9786335 -132485109 + AT_rich Low_complexity Low_complexity 1 36 0 195 129 0 0 chr9 9787126 9787157 -132484287 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 479 240 199 14 chr9 9787503 9787649 -132483795 + MER5B DNA MER1_type 1 173 -5 368 333 89 7 chr9 9788292 9788427 -132483017 + L2 LINE L2 3123 3268 -4 284 208 0 0 chr9 9789837 9789890 -132481554 - L2 LINE L2 0 3313 3261 685 297 53 12 chr9 9790726 9790972 -132480472 + MIR SINE MIR 6 261 -1 450 309 20 56 chr9 9791372 9791621 -132479823 + MIR SINE MIR 23 262 0 296 339 17 44 chr9 9791795 9791975 -132479469 - L2 LINE L2 -173 3099 2925 270 319 0 0 chr9 9792790 9792859 -132478585 - L2 LINE L2 -4 3268 3200 234 62 0 0 chr9 9793222 9793254 -132478190 + (GA)n Simple_repeat Simple_repeat 2 33 0 649 223 120 12 chr9 9793638 9793880 -132477564 + L1ME3A LINE L1 5682 5949 -221 475 194 0 9 chr9 9794156 9794264 -132477180 - L1 LINE L1 -2198 3948 3842 225 132 0 0 chr9 9794437 9794475 -132476969 + (TCC)n Simple_repeat Simple_repeat 1 38 0 336 83 0 0 chr9 9794591 9794639 -132476805 + (TCC)n Simple_repeat Simple_repeat 2 49 0 230 241 0 19 chr9 9794678 9794732 -132476712 + CT-rich Low_complexity Low_complexity 3 55 0 507 45 0 0 chr9 9795302 9795368 -132476076 + (CA)n Simple_repeat Simple_repeat 2 67 0 270 314 137 8 chr9 9797273 9797397 -132474047 - MIR3 SINE MIR -62 146 7 269 262 0 0 chr9 9797499 9797560 -132473884 + MIR3 SINE MIR 138 198 -10 227 224 155 17 chr9 9797808 9797924 -132473520 - MER112 DNA MER1_type -9 251 120 28 0 0 0 chr9 9797927 9797955 -132473489 + AT_rich Low_complexity Low_complexity 1 28 0 505 243 81 29 chr9 9798009 9798182 -132473262 - MIR SINE MIR -70 192 11 2244 101 3 7 chr9 9798580 9798877 -132472567 + AluSx SINE Alu 1 296 -16 2474 42 7 0 chr9 9799278 9799586 -132471858 + L1PA3 LINE L1 5846 6155 0 232 290 58 77 chr9 9802919 9803126 -132468318 + L2 LINE L2 2550 2752 -562 223 231 13 13 chr9 9803751 9803829 -132467615 + CT-rich Low_complexity Low_complexity 2 79 0 300 229 58 133 chr9 9804665 9804790 -132466654 + MER5B DNA MER1_type 4 112 -66 1965 132 7 16 chr9 9804790 9805093 -132466351 - AluSx SINE Alu -12 300 1 300 229 58 133 chr9 9805093 9805155 -132466289 + MER5B DNA MER1_type 112 177 -1 291 227 40 13 chr9 9806098 9806173 -132465271 + MER5A DNA MER1_type 87 163 -26 378 0 0 0 chr9 9807277 9807319 -132464125 + (CA)n Simple_repeat Simple_repeat 2 43 0 367 264 164 0 chr9 9809714 9809824 -132461620 + L2 LINE L2 3145 3272 0 553 283 45 60 chr9 9809836 9810101 -132461343 + L2 LINE L2 3043 3303 -10 205 190 69 17 chr9 9810752 9810810 -132460634 - MIR SINE MIR -110 152 92 2185 123 0 0 chr9 9811031 9811340 -132460104 - AluSc SINE Alu 0 309 1 24 67 0 0 chr9 9811593 9811638 -132459806 + AT_rich Low_complexity Low_complexity 1 45 0 1378 199 31 50 chr9 9812631 9812948 -132458496 - AluJo SINE Alu -1 311 1 189 74 0 0 chr9 9813489 9813516 -132457928 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 242 261 17 118 chr9 9813530 9813649 -132457795 - L2 LINE L2 -19 3253 3147 1437 163 103 39 chr9 9814900 9815182 -132456262 - AluJb SINE Alu -12 300 1 362 264 96 56 chr9 9815237 9815362 -132456082 - L2 LINE L2 0 3272 3143 515 274 39 39 chr9 9816402 9816555 -132454889 - MIR3 SINE MIR -22 186 34 1993 153 0 0 chr9 9816718 9817012 -132454432 + AluSx SINE Alu 1 294 -18 348 264 44 0 chr9 9817212 9817303 -132454141 - MIR SINE MIR 0 262 168 219 371 35 28 chr9 9818147 9818308 -132453136 - MIR SINE MIR -62 146 25 264 250 14 14 chr9 9818917 9818989 -132452455 - L2 LINE L2 0 3313 3242 312 305 166 11 chr9 9819301 9819386 -132452058 - MIR SINE MIR -43 219 149 583 198 27 0 chr9 9819386 9819497 -132451947 + MER81 DNA DNA 1 114 0 312 305 166 11 chr9 9819497 9819598 -132451846 - MIR SINE MIR -113 149 4 2196 127 0 0 chr9 9819604 9819912 -132451532 - AluSq SINE Alu -5 308 1 21 0 0 0 chr9 9820498 9820519 -132450925 + AT_rich Low_complexity Low_complexity 1 21 0 724 293 19 38 chr9 9821065 9821331 -132450113 - MIR SINE MIR 0 262 2 563 324 22 21 chr9 9822911 9823120 -132448324 + MIR SINE MIR 2 213 -49 245 106 0 21 chr9 9823365 9823412 -132448032 + (GA)n Simple_repeat Simple_repeat 1 46 0 460 204 11 11 chr9 9823422 9823515 -132447929 + L2 LINE L2 3180 3272 0 21 0 0 0 chr9 9823565 9823586 -132447858 + AT_rich Low_complexity Low_complexity 1 21 0 4553 92 6 0 chr9 9823586 9824218 -132447226 - L1PB1 LINE L1 -3 6148 5513 2430 55 3 0 chr9 9825254 9825545 -132445899 - AluY SINE Alu -17 294 3 185 255 39 39 chr9 9826467 9826518 -132444926 - MIR3 SINE MIR -18 190 140 * 195 337 22 22 chr9 9826510 9826602 -132444842 - L2 LINE L2 -18 3295 3204 309 227 34 11 chr9 9826609 9826697 -132444747 + L1MCa LINE L1 1979 2068 -4358 * 319 262 71 0 chr9 9826674 9826758 -132444686 + L1MC4 LINE L1 6894 6983 -1339 339 311 0 0 chr9 9826764 9826854 -132444590 + L1MC4 LINE L1 6614 6703 -1339 229 265 0 0 chr9 9827655 9827704 -132443740 + L1ME3A LINE L1 5480 5528 -638 865 303 52 19 chr9 9828140 9828187 -132443257 + L1ME3A LINE L1 5783 5827 -343 2184 128 0 3 chr9 9828187 9828491 -132442953 + AluSq SINE Alu 1 303 -10 865 303 52 19 chr9 9828491 9828809 -132442635 + L1ME3A LINE L1 5827 6160 -10 255 346 6 58 chr9 9831906 9832062 -132439382 + MIR SINE MIR 65 212 -50 21 71 0 0 chr9 9834258 9834300 -132437144 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 9834620 9834641 -132436803 + AT_rich Low_complexity Low_complexity 1 21 0 431 264 30 85 chr9 9835547 9835748 -132435696 - MIR SINE MIR -40 222 33 252 330 62 36 chr9 9836011 9836123 -132435321 + MIR3 SINE MIR 45 159 -49 337 350 34 28 chr9 9836332 9836446 -132434998 + MER5A DNA MER1_type 9 126 -63 2188 127 0 6 chr9 9836446 9836760 -132434684 - AluSx SINE Alu 0 312 1 337 350 34 28 chr9 9836760 9836822 -132434622 + MER5A DNA MER1_type 126 186 -3 767 168 7 13 chr9 9837263 9837412 -132434032 - L1PA16 LINE L1 0 6166 6019 194 250 60 0 chr9 9837771 9837838 -132433606 + MIR SINE MIR 68 141 -67 775 261 72 13 chr9 9838138 9838444 -132433000 - L1MC4 LINE L1 0 8042 7719 2057 139 14 0 chr9 9838505 9838800 -132432644 + AluSx SINE Alu 1 299 -13 2137 130 0 0 chr9 9839572 9839871 -132431573 + AluSx SINE Alu 1 299 -13 471 299 36 0 chr9 9840487 9840624 -132430820 + MIR SINE MIR 58 199 -63 384 268 18 47 chr9 9841201 9841444 -132430000 + L1MB8 LINE L1 892 1131 -5411 1286 122 0 0 chr9 9841481 9841649 -132429795 + AluY SINE Alu 130 300 -11 189 0 0 0 chr9 9841649 9841670 -132429774 + (TA)n Simple_repeat Simple_repeat 1 21 0 1286 122 0 0 chr9 9841670 9841681 -132429763 + AluY SINE Alu 299 309 -2 1998 279 45 13 chr9 9841691 9842477 -132428967 + L1MB8 LINE L1 1249 2059 -4587 4172 244 58 72 chr9 9842482 9844093 -132427351 + L1MB8 LINE L1 3253 4884 -1792 2683 124 11 30 chr9 9844093 9844136 -132427308 + MSTC LTR MaLR 1 43 -385 2246 78 4 0 chr9 9844136 9844452 -132426992 - AluY SINE Alu 0 317 1 2683 124 11 30 chr9 9844452 9844843 -132426601 + MSTC LTR MaLR 43 428 0 4172 244 58 72 chr9 9844843 9845504 -132425940 + L1MB8 LINE L1 4884 5552 -1124 404 19 19 0 chr9 9845504 9845557 -132425887 + (TG)n Simple_repeat Simple_repeat 1 54 0 4172 244 58 72 chr9 9845557 9846771 -132424673 + L1MB8 LINE L1 5552 6674 -2 23 0 0 0 chr9 9846823 9846846 -132424598 + AT_rich Low_complexity Low_complexity 1 23 0 219 316 143 53 chr9 9846879 9847088 -132424356 + MIR SINE MIR 34 261 -1 24 53 0 0 chr9 9847649 9847687 -132423757 + AT_rich Low_complexity Low_complexity 1 38 0 374 302 30 59 chr9 9848009 9848211 -132423233 - L2 LINE L2 0 3313 3118 3048 221 89 17 chr9 9848226 9849057 -132422387 - MER97a DNA MER1_type 0 894 4 237 352 69 110 chr9 9849103 9849495 -132421949 - L2 LINE L2 -366 2948 2573 226 170 21 0 chr9 9849555 9849602 -132421842 - MLT2C2 LTR ERVL 0 464 417 254 304 25 0 chr9 9849607 9849686 -132421758 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 318 248 58 9 chr9 9849689 9849830 -132421614 - MLT2D LTR ERVL -109 411 238 293 299 80 37 chr9 9850318 9850505 -132420939 + MIR SINE MIR 57 251 -11 221 246 49 0 chr9 9850724 9850785 -132420659 + MIR SINE MIR 128 191 -71 839 169 41 52 chr9 9850899 9851071 -132420373 + AluJo SINE Alu 4 173 -139 381 327 70 0 chr9 9851398 9851554 -132419890 + MIR SINE MIR 13 179 -83 311 261 121 48 chr9 9851560 9851725 -132419719 + MLT1L LTR MaLR 437 613 -2 3050 131 59 85 chr9 9853214 9853254 -132418190 - L1MA9 LINE L1 -2 6310 6270 261 0 0 0 chr9 9853254 9853283 -132418161 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 753 71 0 0 chr9 9853282 9853395 -132418049 + (TA)n Simple_repeat Simple_repeat 1 113 0 3050 131 59 85 chr9 9853283 9854003 -132417441 - L1MA9 LINE L1 -42 6270 5679 1292 151 21 45 chr9 9854002 9854293 -132417151 + L1 LINE L1 4178 4461 -1685 * 1802 155 0 50 chr9 9854991 9855314 -132416130 + AluJb SINE Alu 3 309 -3 227 336 60 87 chr9 9856781 9856930 -132414514 - L2 LINE L2 -1 3271 3127 386 154 13 0 chr9 9857103 9857181 -132414263 + GA-rich Low_complexity Low_complexity 3 81 0 196 30 61 0 chr9 9858721 9858754 -132412690 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2189 99 0 35 chr9 9859141 9859454 -132411990 - AluSx SINE Alu -10 302 1 288 0 0 0 chr9 9859688 9859720 -132411724 + (ATG)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr9 9860032 9860060 -132411384 + AT_rich Low_complexity Low_complexity 1 28 0 203 250 26 13 chr9 9860214 9860290 -132411154 + (TA)n Simple_repeat Simple_repeat 1 77 0 410 245 93 29 chr9 9860332 9860471 -132410973 + MIR SINE MIR 59 206 -56 21 0 0 0 chr9 9860491 9860512 -132410932 + AT_rich Low_complexity Low_complexity 1 21 0 2161 106 0 0 chr9 9860652 9860966 -132410478 - AluSq SINE Alu 0 314 1 5817 160 19 36 chr9 9861688 9863789 -132407655 + L1MA3 LINE L1 4185 6174 -131 4956 239 35 22 chr9 9863889 9863976 -132407468 - L1P LINE L1 -2274 3872 3788 1722 174 21 0 chr9 9863976 9864263 -132407181 - AluJo SINE Alu -19 293 1 4956 239 35 22 chr9 9864263 9865445 -132405999 - L1P LINE L1 -2358 3788 2579 2146 109 10 16 chr9 9865445 9865748 -132405696 + AluSx SINE Alu 1 301 -11 4956 239 35 22 chr9 9865748 9865974 -132405470 - L1P LINE L1 -3567 2579 2357 5688 168 23 57 chr9 9865974 9867916 -132403528 + L1PA16 LINE L1 3977 5888 -278 6298 36 0 3 chr9 9868125 9868881 -132402563 - L1PA5 LINE L1 -23 6131 5378 663 329 28 9 chr9 9868884 9869100 -132402344 - MIR SINE MIR -37 225 6 330 321 62 53 chr9 9869172 9869415 -132402029 + L1ME LINE L1 5104 5348 -798 497 281 84 38 chr9 9869475 9869795 -132401649 + L1ME LINE L1 5383 5717 -453 346 19 0 38 chr9 9871238 9871291 -132400153 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 584 303 188 0 chr9 9871721 9871929 -132399515 + MIR SINE MIR 2 248 -14 706 253 84 5 chr9 9872058 9872248 -132399196 - MIR SINE MIR 0 262 58 22 0 0 0 chr9 9872347 9872369 -132399075 + AT_rich Low_complexity Low_complexity 1 22 0 215 224 0 15 chr9 9872842 9872909 -132398535 + GA-rich Low_complexity Low_complexity 3 68 0 222 307 121 7 chr9 9872931 9873071 -132398373 - MIR SINE MIR -10 252 97 5154 156 20 3 chr9 9873509 9874683 -132396761 - L1PA16 LINE L1 -105 6061 4868 861 86 0 0 chr9 9874747 9874864 -132396580 - L1PA8 LINE L1 0 6172 6056 2253 113 0 0 chr9 9875164 9875464 -132395980 + AluSq SINE Alu 1 300 -13 243 258 32 0 chr9 9875671 9875733 -132395711 - MIR SINE MIR -48 160 96 210 118 0 0 chr9 9876137 9876171 -132395273 + (TA)n Simple_repeat Simple_repeat 2 35 0 240 211 184 28 chr9 9876172 9876281 -132395163 - L1ME4a LINE L1 -196 5925 5800 195 306 65 0 chr9 9876606 9876668 -132394776 + L2 LINE L2 3246 3311 -2 237 367 176 27 chr9 9877236 9877828 -132393616 + L2 LINE L2 2225 2904 -410 216 351 0 14 chr9 9878717 9878791 -132392653 + L2 LINE L2 3236 3308 -5 234 270 79 0 chr9 9878839 9878902 -132392542 - MER91A DNA MER1_type -19 177 110 4299 199 38 27 chr9 9879653 9880857 -132390587 + L1MA9 LINE L1 5057 6274 -38 211 163 20 41 chr9 9882053 9882102 -132389342 + MIR SINE MIR 158 205 -57 207 286 0 0 chr9 9882891 9882954 -132388490 + A-rich Low_complexity Low_complexity 1 63 0 1459 164 52 31 chr9 9883874 9884160 -132387284 - AluJo SINE Alu -20 292 1 200 325 75 0 chr9 9884179 9884259 -132387185 - MIR SINE MIR -73 189 104 23 78 0 0 chr9 9884531 9884582 -132386862 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr9 9884777 9884801 -132386643 + AT_rich Low_complexity Low_complexity 1 24 0 337 313 121 16 chr9 9886652 9886908 -132384536 - L1ME4a LINE L1 -1 6120 5838 252 262 141 53 chr9 9886972 9887178 -132384266 - L1ME4a LINE L1 -386 5735 5512 21 0 0 0 chr9 9887517 9887538 -132383906 + AT_rich Low_complexity Low_complexity 1 21 0 208 306 0 40 chr9 9888292 9888416 -132383028 + GA-rich Low_complexity Low_complexity 2 120 0 3043 140 30 4 chr9 9889425 9889967 -132381477 - L1MA4 LINE L1 -1 6299 5744 3457 144 33 33 chr9 9890824 9891283 -132380161 + MER39 LTR ERV1 75 536 -171 2101 125 0 13 chr9 9891283 9891588 -132379856 + AluSx SINE Alu 1 301 -11 3457 144 33 33 chr9 9891588 9891761 -132379683 + MER39 LTR ERV1 535 707 0 448 308 96 0 chr9 9893547 9893703 -132377741 + MIR SINE MIR 36 206 -56 21 36 0 0 chr9 9895451 9895479 -132375965 + AT_rich Low_complexity Low_complexity 1 28 0 549 215 55 6 chr9 9895546 9895709 -132375735 + L1MC5 LINE L1 7610 7780 -181 2468 223 18 38 chr9 9896324 9896864 -132374580 + L1ME1 LINE L1 5508 6034 -132 1731 175 42 28 chr9 9896864 9897224 -132374220 - MLT1A1 LTR MaLR 0 365 1 2468 223 18 38 chr9 9897224 9897350 -132374094 + L1ME1 LINE L1 6034 6161 -5 233 314 29 9 chr9 9897449 9897554 -132373890 - L1ME LINE L1 -305 5816 5710 14884 130 14 15 chr9 9897566 9899986 -132371458 + Tigger1 DNA MER2_type 1 2417 -1 250 306 117 9 chr9 9901496 9901607 -132369837 - L2 LINE L2 0 3313 3191 302 301 24 57 chr9 9901673 9901796 -132369648 - MIR SINE MIR -108 154 36 358 279 39 3 chr9 9903247 9903381 -132368063 - MER63 DNA MER1_type 0 1061 692 29 47 0 0 chr9 9904644 9904687 -132366757 + AT_rich Low_complexity Low_complexity 1 43 0 258 368 26 13 chr9 9905611 9905766 -132365678 + MIR SINE MIR 106 262 0 26 50 0 0 chr9 9906351 9906391 -132365053 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr9 9907417 9907443 -132364001 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr9 9907809 9907835 -132363609 + AT_rich Low_complexity Low_complexity 1 26 0 362 266 156 41 chr9 9907931 9908149 -132363295 - HAL1 LINE L1 -577 1930 1688 21 0 0 0 chr9 9908168 9908189 -132363255 + AT_rich Low_complexity Low_complexity 1 21 0 867 39 0 0 chr9 9908278 9908382 -132363062 - L1PA3 LINE L1 -3 6152 6049 2209 64 7 0 chr9 9908558 9908890 -132362554 - AluY SINE Alu 0 334 1 249 33 0 0 chr9 9909770 9909800 -132361644 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 508 117 0 0 chr9 9909800 9909877 -132361567 - L1PA10 LINE L1 -21 6147 6071 790 283 81 25 chr9 9910735 9911181 -132360263 + LTR33 LTR ERVL 33 519 -2 24 53 0 0 chr9 9911308 9911346 -132360098 + AT_rich Low_complexity Low_complexity 1 38 0 2102 224 77 37 chr9 9912192 9912727 -132358717 + MLT1E LTR MaLR 1 556 -37 195 69 0 0 chr9 9914543 9914572 -132356872 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 264 299 0 0 chr9 9915288 9915355 -132356089 + (TG)n Simple_repeat Simple_repeat 2 68 0 4184 79 2 7 chr9 9915510 9916067 -132355377 + MER41A LTR ERV1 1 554 0 382 314 106 5 chr9 9916663 9916870 -132354574 + MIR SINE MIR 2 229 -33 198 302 116 0 chr9 9917221 9917323 -132354121 - MIR SINE MIR -63 145 25 874 9 27 0 chr9 9919620 9919730 -132351714 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 1948 139 0 3 chr9 9919790 9920077 -132351367 + AluSx SINE Alu 1 286 -26 24 0 0 0 chr9 9920097 9920121 -132351323 + AT_rich Low_complexity Low_complexity 1 24 0 618 248 19 36 chr9 9920331 9920599 -132350845 + L1MA10 LINE L1 5916 6333 -1 1017 305 102 4 chr9 9920687 9921139 -132350305 - L2 LINE L2 -601 2713 2218 285 354 49 18 chr9 9921140 9921304 -132350140 - L2 LINE L2 -2518 796 628 5908 153 42 52 chr9 9921567 9922286 -132349158 + Tigger3b DNA MER2_type 1 703 -2325 1746 69 0 0 chr9 9922286 9922519 -132348925 + L1PA8 LINE L1 5938 6170 -2 5908 153 42 52 chr9 9922519 9923043 -132348401 + Tigger3b DNA MER2_type 703 1231 0 227 294 46 28 chr9 9923424 9923533 -132347911 + MIR SINE MIR 123 233 -29 1399 175 33 17 chr9 9923909 9924223 -132347221 - L1PA16 LINE L1 -9 6165 5813 851 284 99 49 chr9 9924355 9925175 -132346269 - L1ME4a LINE L1 -3 6118 5258 641 310 94 53 chr9 9926240 9926756 -132344688 - L2 LINE L2 0 3313 2784 219 290 32 16 chr9 9928969 9929031 -132342413 - L2 LINE L2 -10 3262 3200 1204 141 101 52 chr9 9929323 9929629 -132341815 + MER33 DNA MER1_type 1 321 -3 22 0 0 0 chr9 9929861 9929883 -132341561 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr9 9930642 9930674 -132340770 + (T)n Simple_repeat Simple_repeat 1 32 0 229 299 15 0 chr9 9931578 9931645 -132339799 + L2 LINE L2 3242 3309 -4 1554 146 32 0 chr9 9931650 9931897 -132339547 - Tigger3(Golem) DNA MER2_type 0 3037 2783 560 250 25 0 chr9 9931898 9932018 -132339426 - Tigger3(Golem) DNA MER2_type -2889 140 18 190 229 71 0 chr9 9932197 9932267 -132339177 - L2 LINE L2 -227 3045 2971 338 280 80 40 chr9 9933071 9933221 -132338223 + MIR SINE MIR 51 206 -56 374 316 52 11 chr9 9933614 9933788 -132337656 - MIR3 SINE MIR -6 202 22 246 235 15 15 chr9 9934027 9934095 -132337349 + CT-rich Low_complexity Low_complexity 2 69 0 402 280 21 39 chr9 9934685 9934842 -132336602 + MIR SINE MIR 39 191 -71 583 235 166 18 chr9 9935005 9935222 -132336222 + MIR SINE MIR 12 260 -2 264 276 15 104 chr9 9935416 9935550 -132335894 + L2 LINE L2 3150 3271 -1 2936 203 23 38 chr9 9935569 9936259 -132335185 + MER67C LTR ERV1 1 680 -30 22 0 0 0 chr9 9936572 9936594 -132334850 + AT_rich Low_complexity Low_complexity 1 22 0 1194 165 21 25 chr9 9936770 9937012 -132334432 + L1MC3 LINE L1 7480 7720 -65 487 270 17 0 chr9 9937551 9937666 -132333778 - MIR3 SINE MIR -9 199 83 278 321 98 9 chr9 9938247 9938359 -132333085 + MIR SINE MIR 24 145 -63 25 0 0 0 chr9 9938389 9938414 -132333030 + AT_rich Low_complexity Low_complexity 1 25 0 2151 106 3 7 chr9 9938923 9939224 -132332220 - AluSq SINE Alu -12 301 2 26 0 0 0 chr9 9939231 9939257 -132332187 + AT_rich Low_complexity Low_complexity 1 26 0 894 197 45 40 chr9 9939817 9940040 -132331404 + MER58A DNA MER1_type 1 224 0 191 263 0 0 chr9 9940377 9940415 -132331029 - MIR SINE MIR -115 147 110 315 248 179 81 chr9 9940422 9940656 -132330788 - MIR SINE MIR 0 262 6 23 33 0 0 chr9 9941523 9941553 -132329891 + AT_rich Low_complexity Low_complexity 1 30 0 2654 88 0 0 chr9 9941575 9941937 -132329507 - L1PA13 LINE L1 -2 6161 5800 235 319 219 12 chr9 9942061 9942221 -132329223 - MIR3 SINE MIR -11 197 5 559 322 79 59 chr9 9942357 9942901 -132328543 - MLT1K LTR MaLR -29 559 5 219 69 0 0 chr9 9942965 9942994 -132328450 + (T)n Simple_repeat Simple_repeat 1 29 0 458 288 165 76 chr9 9943110 9943516 -132327928 + LTR67 LTR ERVL 101 542 -15 1865 152 0 0 chr9 9943981 9944343 -132327101 + AluSx SINE Alu 1 362 0 540 272 17 29 chr9 9946974 9947147 -132324297 - MER58B DNA MER1_type -1 340 170 6470 135 61 9 chr9 9947147 9949318 -132322126 + L1MA2 LINE L1 4014 6304 0 245 189 0 0 chr9 9949639 9949676 -132321768 - MER105 DNA DNA -162 42 6 258 310 37 53 chr9 9950362 9950554 -132320890 + MIR SINE MIR 27 212 -50 1122 252 94 3 chr9 9950840 9951126 -132320318 + Tigger7 DNA MER2_type 1 312 -2175 * 1253 148 5 0 chr9 9951115 9951324 -132320120 + Tigger7 DNA MER2_type 2365 2574 -13 22 35 0 0 chr9 9951513 9951542 -132319902 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr9 9951577 9951611 -132319833 + AT_rich Low_complexity Low_complexity 1 34 0 1871 170 19 32 chr9 9952330 9952700 -132318744 - MLT1A1 LTR MaLR 0 365 1 222 368 0 0 chr9 9953558 9953634 -132317810 + MIR SINE MIR 1 76 -186 243 103 0 0 chr9 9953742 9953781 -132317663 + (ATG)n Simple_repeat Simple_repeat 1 39 0 629 205 21 52 chr9 9953891 9954064 -132317380 + MLT1C LTR MaLR 311 467 0 392 291 7 61 chr9 9954456 9954604 -132316840 - MIR SINE MIR -31 231 92 243 355 40 24 chr9 9955039 9955163 -132316281 - L2 LINE L2 -1 3271 3146 452 301 63 10 chr9 9955373 9955579 -132315865 + L1ME LINE L1 5505 5724 -446 858 191 65 0 chr9 9955592 9955791 -132315653 + L1MA8 LINE L1 6075 6286 -5 442 273 9 0 chr9 9955800 9955910 -132315534 - MLT2D LTR ERVL -303 111 1 245 213 73 6 chr9 9956075 9956239 -132315205 + (TA)n Simple_repeat Simple_repeat 1 175 0 22 35 0 0 chr9 9957151 9957180 -132314264 + AT_rich Low_complexity Low_complexity 1 29 0 274 267 0 0 chr9 9957665 9957725 -132313719 - MIR3 SINE MIR -7 201 142 2595 23 7 3 chr9 9958806 9959116 -132312328 - AluY SINE Alu 0 311 1 22 35 0 0 chr9 9960027 9960056 -132311388 + AT_rich Low_complexity Low_complexity 1 29 0 1038 273 122 35 chr9 9960078 9961077 -132310367 + L1ME3A LINE L1 4272 5357 -789 764 263 72 65 chr9 9961203 9961621 -132309823 + L1ME3A LINE L1 5743 6163 -7 339 136 23 11 chr9 9962886 9962974 -132308470 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 434 345 20 35 chr9 9963452 9963655 -132307789 + MIR3 SINE MIR 9 208 0 305 303 22 11 chr9 9963936 9964025 -132307419 + L2 LINE L2 3219 3308 -5 997 293 83 34 chr9 9965388 9966069 -132305375 - L2 LINE L2 -4 3309 2577 305 340 25 31 chr9 9966218 9966380 -132305064 + MIR SINE MIR 102 262 0 663 307 45 22 chr9 9966424 9966825 -132304619 - L1M4 LINE L1 -2383 3763 3354 1098 249 78 80 chr9 9966831 9967305 -132304139 + MLT1D LTR MaLR 3 475 -30 1750 129 52 4 chr9 9967324 9967628 -132303816 + AluSp SINE Alu 1 317 0 3314 210 28 41 chr9 9967989 9968465 -132302979 - L1MD2 LINE L1 -1 6358 5883 288 327 51 37 chr9 9968465 9968899 -132302545 - L1PA8A LINE L1 -232 5899 5460 1943 139 3 0 chr9 9968979 9969273 -132302171 - AluSc SINE Alu -14 295 1 23 0 0 0 chr9 9970962 9970985 -132300459 + AT_rich Low_complexity Low_complexity 1 23 0 975 168 5 59 chr9 9971283 9971486 -132299958 - AluJo SINE Alu -28 284 93 1566 214 64 120 chr9 9971529 9972225 -132299219 + MLT1E1 LTR MaLR 1 650 -4 378 0 0 0 chr9 9972644 9972686 -132298758 + (CA)n Simple_repeat Simple_repeat 2 43 0 308 343 7 21 chr9 9972953 9973096 -132298348 - MIR SINE MIR -12 250 110 229 273 18 0 chr9 9973552 9973607 -132297837 - L2 LINE L2 -8 3305 3250 2018 189 112 5 chr9 9973745 9974163 -132297281 + MLT2C2 LTR ERVL 2 464 0 327 237 119 25 chr9 9974298 9974416 -132297028 + MIR SINE MIR 121 249 -13 22 0 0 0 chr9 9974946 9974968 -132296476 + AT_rich Low_complexity Low_complexity 1 22 0 1085 87 6 6 chr9 9974968 9975167 -132296277 - L1M LINE L1 -743 5403 5214 1507 106 16 8 chr9 9975514 9975759 -132295685 - L1MA3 LINE L1 0 6305 6059 6765 58 84 0 chr9 9975776 9976762 -132294682 - L1PA5 LINE L1 -2 6152 5146 5231 105 8 19 chr9 9976771 9977652 -132293792 - L1MA3 LINE L1 -257 6048 5179 618 260 78 39 chr9 9978973 9979204 -132292240 - LTR16A LTR ERVL -6 444 205 463 113 72 10 chr9 9979204 9979301 -132292143 - L1MA5A LINE L1 -1 6296 6194 321 176 29 0 chr9 9979301 9979369 -132292075 - L1MA5A LINE L1 -57 6240 6171 * 2945 148 47 9 chr9 9979343 9979983 -132291461 - L1MA5A LINE L1 -46 6251 5548 243 298 80 16 chr9 9980542 9980674 -132290770 - MIR SINE MIR -61 147 2 539 258 91 45 chr9 9980797 9981018 -132290426 - MIR SINE MIR -27 235 5 8082 99 3 6 chr9 9981099 9982294 -132289150 - L1PA7 LINE L1 -2718 3428 2237 3782 109 16 0 chr9 9982295 9982864 -132288580 + L1PA7 LINE L1 3444 4021 -2125 9206 96 4 3 chr9 9982865 9984942 -132286502 + L1PA7 LINE L1 4075 6153 -1 22 0 0 0 chr9 9987711 9987733 -132283711 + AT_rich Low_complexity Low_complexity 1 22 0 223 315 77 31 chr9 9987984 9988114 -132283330 - MIR SINE MIR -41 221 86 2208 121 16 0 chr9 9988257 9988564 -132282880 - AluSx SINE Alu 0 312 1 2155 115 26 0 chr9 9988688 9988992 -132282452 + AluSx SINE Alu 1 312 0 648 223 141 15 chr9 9989167 9989373 -132282071 + MIR SINE MIR 28 259 -3 254 208 0 0 chr9 9989598 9989645 -132281799 - MER58A DNA MER1_type -17 207 161 475 255 57 0 chr9 9989645 9989751 -132281693 - MER58A DNA MER1_type 0 113 2 182 333 118 11 chr9 9989824 9989917 -132281527 + MIR3 SINE MIR 83 185 -23 2804 135 30 4 chr9 9990310 9990806 -132280638 - L1MA4 LINE L1 0 6300 5792 228 184 184 0 chr9 9991964 9992013 -132279431 + L2 LINE L2 3209 3266 -6 5312 255 87 36 chr9 9993178 9994561 -132276883 + L1MEc LINE L1 2197 3507 -2708 3002 112 18 22 chr9 9994561 9995063 -132276381 + L1PB2 LINE L1 5651 6150 -1 5312 255 87 36 chr9 9995063 9995126 -132276318 + L1MEc LINE L1 3507 3565 -2650 191 35 0 35 chr9 9995126 9995155 -132276289 + (CAA)n Simple_repeat Simple_repeat 2 29 0 5312 255 87 36 chr9 9995155 9995814 -132275630 + L1MEc LINE L1 3565 4402 -1813 468 198 23 0 chr9 9995922 9996008 -132275436 - AluJ/FLAM SINE Alu -222 90 3 2998 197 68 16 chr9 9996024 9996731 -132274713 + L1MA9 LINE L1 5531 6274 -38 316 247 0 0 chr9 9996975 9997052 -132274392 - L1MC4 LINE L1 -4 8038 7962 475 278 22 28 chr9 9997385 9997565 -132273879 + Charlie8 DNA MER1_type 85 263 -2154 2152 86 0 7 chr9 9997785 9998065 -132273379 - AluY SINE Alu -6 305 28 1060 200 48 0 chr9 9998112 9998342 -132273102 + LTR40a LTR ERVL 1 241 -278 38 51 0 0 chr9 9998408 9998467 -132272977 + AT_rich Low_complexity Low_complexity 1 59 0 201 194 0 56 chr9 9998643 9998674 -132272770 + T-rich Low_complexity Low_complexity 5 36 -36 1740 136 31 0 chr9 9998674 9998931 -132272513 - AluSx SINE Alu -47 265 1 201 194 0 56 chr9 9998931 9998971 -132272473 + T-rich Low_complexity Low_complexity 36 72 0 332 354 69 33 chr9 9999075 9999437 -132272007 + L1ME3A LINE L1 5515 5889 -275 180 68 45 23 chr9 10001544 10001588 -132269856 + A-rich Low_complexity Low_complexity 1 45 0 202 98 24 49 chr9 10003198 10003239 -132268205 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1748 165 0 13 chr9 10004077 10004386 -132267058 + AluJb SINE Alu 1 305 -7 1223 221 67 45 chr9 10004477 10004808 -132266636 - MER58B DNA MER1_type -3 338 1 300 389 32 11 chr9 10005486 10005671 -132265773 - MIR3 SINE MIR -13 195 7 22 35 0 0 chr9 10006666 10006695 -132264749 + AT_rich Low_complexity Low_complexity 1 29 0 326 306 191 25 chr9 10006696 10006895 -132264549 - MIR SINE MIR 0 262 31 207 0 0 0 chr9 10006991 10007014 -132264430 + (A)n Simple_repeat Simple_repeat 1 23 0 505 276 39 111 chr9 10008762 10009121 -132262323 - MLT1I LTR MaLR 0 409 77 329 328 102 16 chr9 10009717 10009903 -132261541 + MIR SINE MIR 13 214 -48 919 180 51 6 chr9 10010651 10010829 -132260615 + MER5A DNA MER1_type 1 186 -3 310 373 108 52 chr9 10011119 10011157 -132260287 - L2 LINE L2 -24 3248 3214 811 232 45 58 chr9 10011157 10011381 -132260063 + MER58A DNA MER1_type 4 224 0 310 373 108 52 chr9 10011381 10011629 -132259815 - L2 LINE L2 -58 3214 2946 1690 178 3 35 chr9 10013339 10013653 -132257791 - AluJo SINE Alu -8 304 1 3538 154 27 109 chr9 10015695 10016591 -132254853 + L1PB3 LINE L1 5330 6151 -3 2463 109 8 31 chr9 10016611 10016996 -132254448 + L1PB3 LINE L1 5770 6145 -9 247 291 76 0 chr9 10017269 10017348 -132254096 + L2 LINE L2 3227 3311 -2 508 247 16 70 chr9 10018273 10018459 -132252985 - MER69A DNA AcHobo -1 176 1 2021 104 35 3 chr9 10019915 10020202 -132251242 - AluSx SINE Alu -16 296 1 400 198 31 0 chr9 10020267 10020363 -132251081 + L1MA4A LINE L1 6182 6280 -23 347 183 0 118 chr9 10020506 10020599 -132250845 - MER103 DNA DNA -36 130 49 371 335 59 18 chr9 10020984 10021154 -132250290 - MER5B DNA MER1_type -1 177 1 478 319 12 0 chr9 10021281 10021441 -132250003 - MIR SINE MIR -2 260 99 3671 129 13 13 chr9 10021605 10022208 -132249236 + L1PB1 LINE L1 5546 6148 -3 192 40 0 0 chr9 10023382 10023407 -132248037 + (TTG)n Simple_repeat Simple_repeat 2 26 0 365 318 82 29 chr9 10025837 10026007 -132245437 + L2 LINE L2 3088 3266 -6 715 343 73 27 chr9 10026055 10026662 -132244782 - L2 LINE L2 -8 3264 2628 3827 178 36 99 chr9 10026762 10027361 -132244083 - MER6 DNA MER2_type 0 865 343 255 103 0 0 chr9 10027361 10027400 -132244044 + (CA)n Simple_repeat Simple_repeat 1 39 0 3827 178 36 99 chr9 10027400 10027723 -132243721 - MER6 DNA MER2_type -522 343 1 329 325 124 47 chr9 10027748 10028175 -132243269 - L2 LINE L2 -708 2606 2147 21 0 0 0 chr9 10028564 10028585 -132242859 + AT_rich Low_complexity Low_complexity 1 21 0 220 306 0 0 chr9 10028685 10028747 -132242697 + (CA)n Simple_repeat Simple_repeat 2 63 0 2089 93 18 0 chr9 10029486 10029785 -132241659 + AluSq SINE Alu 1 304 0 577 256 231 0 chr9 10030216 10030411 -132241033 + MIR SINE MIR 6 245 -17 2244 70 0 7 chr9 10032376 10032687 -132238757 - AluY SINE Alu 0 309 1 677 255 292 11 chr9 10034318 10034434 -132237010 + L2 LINE L2 2319 2401 -913 2831 16 0 3 chr9 10034434 10034748 -132236696 - AluYb8 SINE Alu -2 316 4 677 255 292 11 chr9 10034748 10035011 -132236433 + L2 LINE L2 2401 2805 -509 446 245 8 97 chr9 10035025 10035262 -132236182 + L2 LINE L2 3077 3292 -21 229 296 0 0 chr9 10036362 10036416 -132235028 + (CATA)n Simple_repeat Simple_repeat 3 56 0 23 54 0 0 chr9 10037598 10037635 -132233809 + AT_rich Low_complexity Low_complexity 1 37 0 182 375 48 10 chr9 10037782 10037886 -132233558 + MIR3 SINE MIR 69 176 -32 227 327 39 10 chr9 10038339 10038443 -132233001 - MIR SINE MIR -62 146 40 250 206 135 92 chr9 10038626 10038767 -132232677 + MIR SINE MIR 116 262 0 1109 141 0 47 chr9 10039488 10039587 -132231857 - Tigger7 DNA MER2_type -7 2484 2397 1022 178 25 5 chr9 10039587 10039789 -132231655 + MER6B DNA MER2_type 2 207 -3 1109 141 0 47 chr9 10039789 10039881 -132231563 - Tigger7 DNA MER2_type -94 2397 2302 * 1544 192 49 13 chr9 10039877 10040184 -132231260 - Tigger7 DNA MER2_type -415 318 1 258 105 0 0 chr9 10040570 10040608 -132230836 + (A)n Simple_repeat Simple_repeat 1 38 0 2563 44 0 0 chr9 10040960 10041256 -132230188 - AluY SINE Alu -15 296 1 403 278 85 40 chr9 10041285 10041461 -132229983 + MLT1J1 LTR MaLR 36 219 -227 245 225 0 56 chr9 10041472 10041632 -132229812 + CT-rich Low_complexity Low_complexity 2 152 0 342 310 83 7 chr9 10041662 10041807 -132229637 + MLT1J2 LTR MaLR 290 445 -5 350 186 40 16 chr9 10042055 10042179 -132229265 + (TA)n Simple_repeat Simple_repeat 1 127 0 336 312 188 10 chr9 10043164 10043579 -132227865 + LTR33 LTR ERVL 1 517 -4 317 341 115 1 chr9 10043587 10043761 -132227683 - MIR3 SINE MIR -63 145 3 2064 133 7 3 chr9 10044850 10045159 -132226285 + AluSg SINE Alu 1 310 0 24 32 0 0 chr9 10046623 10046654 -132224790 + AT_rich Low_complexity Low_complexity 1 31 0 483 315 33 5 chr9 10046693 10046877 -132224567 + MER5A DNA MER1_type 1 189 0 206 238 63 48 chr9 10046960 10047023 -132224421 - MIR3 SINE MIR -18 190 127 32 26 0 0 chr9 10047731 10047770 -132223674 + AT_rich Low_complexity Low_complexity 1 39 0 1376 162 59 15 chr9 10047862 10048133 -132223311 + MER58B DNA MER1_type 56 338 -3 531 218 40 114 chr9 10048163 10048365 -132223079 + MER5A DNA MER1_type 2 188 -1 21 0 0 0 chr9 10049019 10049040 -132222404 + AT_rich Low_complexity Low_complexity 1 21 0 657 307 49 25 chr9 10049449 10049693 -132221751 + MIR SINE MIR 13 262 0 310 286 71 36 chr9 10050667 10050779 -132220665 - L2 LINE L2 -8 3264 3149 227 86 54 65 chr9 10050785 10050878 -132220566 + (TA)n Simple_repeat Simple_repeat 1 92 0 1736 133 66 0 chr9 10050878 10051149 -132220295 - AluSx SINE Alu -23 289 1 362 266 98 90 chr9 10054298 10054647 -132216797 + MLT1I LTR MaLR 19 373 -36 962 245 80 52 chr9 10054647 10055010 -132216434 - MLT1A2 LTR MaLR -1 373 1 362 266 98 90 chr9 10055010 10055048 -132216396 + MLT1I LTR MaLR 373 409 0 43 47 0 0 chr9 10056799 10056863 -132214581 + AT_rich Low_complexity Low_complexity 1 64 0 10150 177 27 30 chr9 10057469 10058084 -132213360 + L1MA7 LINE L1 2949 3565 -2726 3985 97 30 15 chr9 10058084 10058685 -132212759 - L1PA11 LINE L1 0 6174 5565 10150 177 27 30 chr9 10058685 10058710 -132212734 + L1MA7 LINE L1 3565 3589 -2702 2139 94 0 0 chr9 10058710 10059002 -132212442 + AluSg SINE Alu 14 305 0 10150 177 27 30 chr9 10059002 10061711 -132209733 + L1MA7 LINE L1 3589 6289 -2 25 31 0 0 chr9 10061888 10061920 -132209524 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 10062234 10062255 -132209189 + AT_rich Low_complexity Low_complexity 1 21 0 1439 346 95 39 chr9 10062568 10064344 -132207100 + L2 LINE L2 1167 3049 -223 1957 211 67 43 chr9 10064447 10064940 -132206504 - MLT1D LTR MaLR 0 505 1 308 287 23 0 chr9 10064980 10065067 -132206377 + L2 LINE L2 3225 3313 0 2101 109 7 13 chr9 10065109 10065229 -132206215 + AluSx SINE Alu 1 120 -192 342 0 0 0 chr9 10065229 10065267 -132206177 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2101 109 7 13 chr9 10065267 10065448 -132205996 + AluSx SINE Alu 120 300 -12 261 376 105 0 chr9 10065482 10065615 -132205829 - L2 LINE L2 -4 3268 3122 310 349 11 0 chr9 10067418 10067529 -132203915 - MIR SINE MIR -78 130 14 288 0 0 0 chr9 10067706 10067738 -132203706 + (TG)n Simple_repeat Simple_repeat 1 32 0 2184 133 0 0 chr9 10067850 10068159 -132203285 + AluSp SINE Alu 1 309 -4 930 227 72 0 chr9 10068418 10068625 -132202819 + MER58A DNA MER1_type 2 223 -1 23 0 0 0 chr9 10068780 10068803 -132202641 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr9 10069246 10069282 -132202162 + AT_rich Low_complexity Low_complexity 1 36 0 36 40 0 0 chr9 10071702 10071752 -132199692 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr9 10072092 10072123 -132199321 + AT_rich Low_complexity Low_complexity 1 31 0 194 343 0 29 chr9 10072562 10072632 -132198812 + L2 LINE L2 3246 3313 0 851 275 115 50 chr9 10073058 10073608 -132197836 + L2 LINE L2 2457 3039 -274 1802 154 11 76 chr9 10073776 10074145 -132197299 - MER7A DNA MER2_type -2 344 2 195 167 146 0 chr9 10074233 10074281 -132197163 + L2 LINE L2 3180 3234 -38 363 301 89 14 chr9 10074551 10074697 -132196747 + L2 LINE L2 3152 3308 -5 27 29 0 0 chr9 10075136 10075170 -132196274 + AT_rich Low_complexity Low_complexity 1 34 0 1768 201 22 3 chr9 10075220 10075578 -132195866 + MLT1A1 LTR MaLR 1 365 0 2373 97 0 7 chr9 10075718 10076028 -132195416 + AluSg SINE Alu 1 308 -2 1779 203 39 21 chr9 10076894 10077283 -132194161 + MSTD LTR MaLR 1 396 0 2179 124 18 47 chr9 10077388 10077774 -132193670 - THE1C LTR MaLR 0 375 1 515 284 88 42 chr9 10078229 10078468 -132192976 + L3 LINE CR1 998 1247 -330 202 265 0 0 chr9 10078474 10078523 -132192921 + L3 LINE CR1 1363 1411 -166 354 202 18 18 chr9 10078665 10078774 -132192670 + CT-rich Low_complexity Low_complexity 4 112 0 291 321 80 15 chr9 10078812 10078949 -132192495 + MIR3 SINE MIR 52 197 -11 189 315 117 63 chr9 10079933 10080044 -132191400 - L2 LINE L2 -3 3269 3153 407 254 238 22 chr9 10080158 10080343 -132191101 + MIR SINE MIR 28 252 -10 4467 38 0 0 chr9 10080451 10080985 -132190459 + L1PA4 LINE L1 5619 6152 -3 244 333 14 0 chr9 10081165 10081237 -132190207 + L3 LINE CR1 411 483 -1094 227 319 138 26 chr9 10081392 10081508 -132189936 + MIR3 SINE MIR 11 139 -69 201 129 0 0 chr9 10081548 10081579 -132189865 + MIR SINE MIR 220 250 -12 21 36 0 0 chr9 10081847 10081875 -132189569 + AT_rich Low_complexity Low_complexity 1 28 0 527 289 96 23 chr9 10081880 10082098 -132189346 - MIR SINE MIR -4 258 25 210 314 0 0 chr9 10083707 10083758 -132187686 - L2 LINE L2 -85 3187 3137 203 272 111 12 chr9 10083782 10083863 -132187581 - MIR SINE MIR -74 188 100 378 200 156 0 chr9 10084622 10084712 -132186732 + MLT1J2 LTR MaLR 1 104 -346 280 250 39 86 chr9 10084906 10085034 -132186410 + MLT1J2 LTR MaLR 311 432 -18 199 359 10 78 chr9 10085051 10085154 -132186290 + L2 LINE L2 3141 3236 -36 1026 213 0 5 chr9 10086791 10086979 -132184465 + AluJb SINE Alu 87 273 -39 498 46 0 0 chr9 10086979 10087044 -132184400 + (TC)n Simple_repeat Simple_repeat 1 65 0 26 0 0 0 chr9 10087365 10087391 -132184053 + AT_rich Low_complexity Low_complexity 1 26 0 204 200 0 0 chr9 10087951 10087996 -132183448 + CT-rich Low_complexity Low_complexity 1 45 0 186 103 0 0 chr9 10088185 10088214 -132183230 + (TG)n Simple_repeat Simple_repeat 2 30 0 1012 233 90 23 chr9 10088315 10088903 -132182541 - L1ME3A LINE L1 -20 6150 5490 329 0 24 0 chr9 10089186 10089227 -132182217 + (TG)n Simple_repeat Simple_repeat 1 42 0 476 335 44 0 chr9 10089609 10089767 -132181677 - MIR3 SINE MIR -7 201 37 403 383 47 34 chr9 10089821 10090119 -132181325 + L2 LINE L2 2970 3271 -1 558 258 140 6 chr9 10090205 10090383 -132181061 + MLT1I LTR MaLR 17 218 -191 1780 216 39 23 chr9 10090434 10090623 -132180821 + MSTD LTR MaLR 2 187 -209 2173 70 138 0 chr9 10090623 10090935 -132180509 + THE1A LTR MaLR 1 355 0 1780 216 39 23 chr9 10090935 10091134 -132180310 + MSTD LTR MaLR 187 396 0 384 306 37 0 chr9 10091135 10091243 -132180201 + MLT1I LTR MaLR 295 406 -3 225 213 16 0 chr9 10091244 10091305 -132180139 + MST-int LTR MaLR 1560 1621 -30 1284 231 61 112 chr9 10091332 10091930 -132179514 + MLT1F1 LTR MaLR 1 567 0 23 0 0 0 chr9 10092132 10092155 -132179289 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 10093524 10093550 -132177894 + AT_rich Low_complexity Low_complexity 1 26 0 7355 129 31 2 chr9 10093789 10094986 -132176458 - Tigger3b DNA MER2_type 0 1231 1 227 162 0 73 chr9 10095377 10095445 -132175999 + L1MC4 LINE L1 6641 6703 -1339 * 266 228 127 0 chr9 10095413 10095492 -132175952 + L1MC4 LINE L1 6614 6702 -1340 222 316 122 10 chr9 10096420 10096518 -132174926 + MIR SINE MIR 43 151 -57 503 350 9 27 chr9 10096884 10097107 -132174337 + MIR SINE MIR 31 249 -13 2590 207 42 10 chr9 10097165 10097760 -132173684 + MER90 LTR ERV1 1 614 0 2163 108 0 0 chr9 10097802 10098088 -132173356 - AluSx SINE Alu -26 286 1 180 200 0 0 chr9 10098163 10098198 -132173246 + L2 LINE L2 3238 3272 0 25 51 0 0 chr9 10100161 10100200 -132171244 + AT_rich Low_complexity Low_complexity 1 39 0 252 311 152 8 chr9 10100245 10100377 -132171067 + MIR SINE MIR 28 178 -84 243 307 84 58 chr9 10100503 10100728 -132170716 + MLT1K LTR MaLR 336 566 -22 326 270 165 23 chr9 10100826 10101001 -132170443 - MIR3 SINE MIR -11 251 26 836 122 0 0 chr9 10103491 10103606 -132167838 + AluSp/q SINE Alu 167 281 -32 264 30 0 0 chr9 10103608 10103641 -132167803 + (CA)n Simple_repeat Simple_repeat 2 34 0 719 294 54 67 chr9 10106121 10106810 -132164634 - L2 LINE L2 0 3313 2624 2023 157 45 42 chr9 10106812 10107353 -132164091 + MLT2A2 LTR ERVL 1 554 0 1132 310 27 10 chr9 10107353 10107766 -132163678 - L2 LINE L2 -688 2626 2207 1545 279 12 34 chr9 10107878 10108372 -132163072 + L1MC5 LINE L1 5453 5935 -1873 2325 69 16 0 chr9 10108413 10108719 -132162725 - AluY SINE Alu 0 311 1 1635 240 97 68 chr9 10108983 10109215 -132162229 + L1MC5 LINE L1 7008 7232 -729 2331 77 0 3 chr9 10109215 10109513 -132161931 - AluY SINE Alu -14 297 1 1635 240 97 68 chr9 10109513 10110159 -132161285 + L1MC5 LINE L1 7232 7911 -50 21 0 0 0 chr9 10110165 10110186 -132161258 + AT_rich Low_complexity Low_complexity 1 21 0 1984 225 89 7 chr9 10110189 10110647 -132160797 - LTR40a LTR ERVL -18 501 6 21 0 0 0 chr9 10110849 10110870 -132160574 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 10111336 10111357 -132160087 + AT_rich Low_complexity Low_complexity 1 21 0 228 86 0 0 chr9 10111477 10111512 -132159932 + (TG)n Simple_repeat Simple_repeat 2 36 0 631 344 27 19 chr9 10111605 10111861 -132159583 + MIR SINE MIR 4 261 -1 255 61 0 0 chr9 10111869 10111902 -132159542 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 411 21 0 0 chr9 10111917 10111965 -132159479 + (CA)n Simple_repeat Simple_repeat 1 48 0 530 302 15 42 chr9 10112102 10112370 -132159074 - MIR SINE MIR 0 262 3 13443 83 2 5 chr9 10162588 10165331 -132106113 + L1PA7 LINE L1 3415 6152 -2 27434 64 4 12 chr9 10166123 10170636 -132100808 + L1PA6 LINE L1 1675 6148 -6 302 257 29 0 chr9 10170657 10170727 -132100717 - SATR1 Satellite Satellite -387 83 12 8788 41 0 0 chr9 10170830 10172712 -132098732 + L1PA3 LINE L1 4283 6152 -3 35399 44 1 4 chr9 10173661 10178016 -132093428 - L1P LINE L1 -1802 4344 2 1168 279 97 3 chr9 10178192 10178575 -132092869 + L2 LINE L2 2016 2434 -880 14569 126 14 5 chr9 10178770 10181159 -132090285 + L1P LINE L1 952 3360 -2786 2169 164 38 75 chr9 10181261 10181728 -132089716 - L1MC3 LINE L1 -709 7076 6630 3216 191 99 6 chr9 10181728 10182397 -132089047 - MER44D DNA MER2_type -2 603 1 2169 164 38 75 chr9 10182397 10182478 -132088966 - L1MC3 LINE L1 -1155 6630 6548 1087 235 45 79 chr9 10182505 10182909 -132088535 + MLT1B LTR MaLR 1 390 0 21 71 0 0 chr9 10182935 10182977 -132088467 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr9 10183121 10183149 -132088295 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 10185672 10185693 -132085751 + AT_rich Low_complexity Low_complexity 1 21 0 374 223 96 0 chr9 10185947 10186041 -132085403 - MIR SINE MIR -28 234 132 210 281 35 0 chr9 10186076 10186133 -132085311 + L2 LINE L2 3214 3272 0 201 351 20 20 chr9 10186142 10186290 -132085154 - L2 LINE L2 -828 2486 2339 955 166 71 33 chr9 10187368 10187579 -132083865 + MER20 DNA MER1_type 1 219 0 463 348 80 26 chr9 10188178 10188517 -132082927 + L2 LINE L2 2620 2976 -338 1702 198 19 19 chr9 10188570 10188934 -132082510 + MLT1A1 LTR MaLR 2 365 0 380 324 0 9 chr9 10189056 10189167 -132082277 + L2 LINE L2 3143 3252 -20 21 0 0 0 chr9 10190474 10190495 -132080949 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr9 10190686 10190713 -132080731 + (T)n Simple_repeat Simple_repeat 1 27 0 333 264 63 38 chr9 10192007 10192166 -132079278 - HAL1 LINE L1 -14 2493 2331 482 304 101 34 chr9 10192175 10192471 -132078973 - L2 LINE L2 0 3313 2998 749 281 83 112 chr9 10192486 10193442 -132078002 - HAL1 LINE L1 -1577 930 3 242 308 54 39 chr9 10193450 10193580 -132077864 - L2 LINE L2 -4 3268 3137 1185 210 60 111 chr9 10193695 10194128 -132077316 + MLT1C LTR MaLR 53 463 -4 2285 104 3 3 chr9 10194377 10194685 -132076759 + AluSx SINE Alu 1 308 -4 424 374 33 39 chr9 10195713 10196045 -132075399 + L2 LINE L2 2647 2976 -338 2158 106 0 0 chr9 10198731 10199060 -132072384 + AluSp SINE Alu 1 329 0 186 312 119 9 chr9 10199262 10199371 -132072073 - MIR SINE MIR -81 181 61 204 316 0 61 chr9 10200244 10200342 -132071102 - MIR SINE MIR -71 191 100 4613 167 37 7 chr9 10200490 10201327 -132070117 + MER6 DNA MER2_type 1 862 -3 244 322 0 35 chr9 10202675 10202762 -132068682 + L2 LINE L2 3188 3271 -1 216 0 0 0 chr9 10203929 10203953 -132067491 + (T)n Simple_repeat Simple_repeat 1 24 0 297 325 192 41 chr9 10205365 10205824 -132065620 + L2 LINE L2 2249 2776 -538 2223 107 10 3 chr9 10205985 10206293 -132065151 + AluSp SINE Alu 1 310 -3 230 156 0 0 chr9 10206298 10206343 -132065101 + A-rich Low_complexity Low_complexity 4 48 0 21 36 0 0 chr9 10208520 10208548 -132062896 + AT_rich Low_complexity Low_complexity 1 28 0 2112 113 7 0 chr9 10209369 10209662 -132061782 + AluSp SINE Alu 1 295 -18 561 267 85 0 chr9 10209793 10209958 -132061486 + MIR SINE MIR 72 250 -12 369 339 79 21 chr9 10210381 10210570 -132060874 - MIR SINE MIR -15 247 48 21 0 0 0 chr9 10211056 10211077 -132060367 + AT_rich Low_complexity Low_complexity 1 21 0 379 297 85 18 chr9 10211432 10211597 -132059847 - MIR SINE MIR -64 198 23 12718 59 0 1 chr9 10211791 10214183 -132057261 - L1PA6 LINE L1 -4 6150 3758 262 342 0 0 chr9 10214526 10214605 -132056839 - MIR SINE MIR -113 149 71 1680 76 22 0 chr9 10215900 10216125 -132055319 + MER30 DNA MER1_type 1 230 0 1903 161 3 3 chr9 10216721 10217032 -132054412 - AluSx SINE Alu 0 312 2 228 100 0 0 chr9 10217333 10217373 -132054071 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 311 48 48 16 chr9 10221451 10221514 -132049930 + (TA)n Simple_repeat Simple_repeat 1 65 0 221 377 9 38 chr9 10221565 10221671 -132049773 + MIR3 SINE MIR 4 106 -102 415 286 96 11 chr9 10222548 10222726 -132048718 + MIR SINE MIR 63 255 -7 216 111 0 0 chr9 10222730 10222766 -132048678 + (CAT)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr9 10223544 10223575 -132047869 + AT_rich Low_complexity Low_complexity 1 31 0 195 244 22 0 chr9 10223724 10223769 -132047675 - MIR3 SINE MIR -36 172 127 29 70 0 0 chr9 10226446 10226503 -132044941 + AT_rich Low_complexity Low_complexity 1 57 0 1676 76 0 4 chr9 10226682 10226907 -132044537 - L1PA7 LINE L1 -3 6151 5928 1992 72 0 34 chr9 10227183 10227448 -132043996 + AluY SINE Alu 1 256 -55 192 328 16 0 chr9 10227539 10227600 -132043844 + L2 LINE L2 3251 3312 -1 22 0 0 0 chr9 10229779 10229801 -132041643 + AT_rich Low_complexity Low_complexity 1 22 0 1967 153 0 3 chr9 10229801 10230096 -132041348 - AluSx SINE Alu -18 294 1 6097 50 11 27 chr9 10230698 10231515 -132039929 - L1PA7 LINE L1 0 6154 5351 2436 87 3 3 chr9 10232148 10232493 -132038951 + L1PA8 LINE L1 5826 6170 -2 38 39 0 0 chr9 10232730 10232782 -132038662 + AT_rich Low_complexity Low_complexity 1 52 0 27 49 0 0 chr9 10233215 10233256 -132038188 + AT_rich Low_complexity Low_complexity 1 41 0 528 316 26 74 chr9 10233620 10233889 -132037555 + MIR SINE MIR 7 262 0 2186 117 0 0 chr9 10234681 10234980 -132036464 - AluSq SINE Alu -14 299 1 675 255 0 13 chr9 10235010 10235163 -132036281 + AluJb SINE Alu 139 289 -23 294 167 0 0 chr9 10235292 10235352 -132036092 + (TA)n Simple_repeat Simple_repeat 1 60 0 188 188 0 0 chr9 10237138 10237170 -132034274 + L2 LINE L2 2705 2736 -578 348 344 110 0 chr9 10239738 10239901 -132031543 + MIR SINE MIR 11 191 -71 510 211 0 19 chr9 10239993 10240097 -132031347 - AluJ/FLAM SINE Alu -210 102 1 357 336 66 5 chr9 10240099 10240310 -132031134 - L1MC4a LINE L1 -1906 5902 5679 390 159 0 0 chr9 10240315 10240384 -132031060 + (TG)n Simple_repeat Simple_repeat 2 70 0 346 364 19 6 chr9 10241327 10241489 -132029955 - MIR3 SINE MIR 0 208 45 1468 243 98 17 chr9 10241727 10242310 -132029134 - MLT1E3 LTR MaLR 0 624 1 928 290 120 40 chr9 10242518 10243083 -132028361 - L2 LINE L2 -38 3275 2670 430 202 67 10 chr9 10243087 10243191 -132028253 - L1MA10 LINE L1 -58 6276 6167 3244 277 46 19 chr9 10243261 10244353 -132027091 - L2 LINE L2 -638 2676 1556 321 381 39 0 chr9 10244657 10244812 -132026632 + MIR3 SINE MIR 20 180 -28 23 0 0 0 chr9 10245692 10245715 -132025729 + AT_rich Low_complexity Low_complexity 1 23 0 181 316 82 20 chr9 10247782 10247880 -132023564 - L2 LINE L2 -5 3267 3164 890 181 102 0 chr9 10249510 10249715 -132021729 - L1MA4 LINE L1 0 6300 6075 225 299 52 10 chr9 10249823 10249920 -132021524 - L2 LINE L2 -13 3300 3200 21 0 0 0 chr9 10250276 10250297 -132021147 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 10251099 10251120 -132020324 + AT_rich Low_complexity Low_complexity 1 21 0 193 261 0 0 chr9 10251790 10251836 -132019608 - MIR SINE MIR -120 142 97 1117 293 103 41 chr9 10252257 10253088 -132018356 - L2 LINE L2 -43 3270 2392 371 325 52 13 chr9 10256157 10256311 -132015133 + MIR SINE MIR 47 206 -56 28898 32 1 1 chr9 10256750 10260879 -132010565 - L1PA4 LINE L1 -3 6152 1872 242 313 90 14 chr9 10260885 10261029 -132010415 - L1ME LINE L1 -484 5637 5483 514 294 0 0 chr9 10261132 10261258 -132010186 + MIR SINE MIR 4 129 -133 1431 227 135 33 chr9 10261368 10261826 -132009618 - MLT1D LTR MaLR 0 505 1 338 315 80 0 chr9 10261830 10261992 -132009452 - L1ME LINE L1 -813 5333 5159 216 97 0 0 chr9 10263059 10263090 -132008354 + (TG)n Simple_repeat Simple_repeat 2 32 0 2055 195 64 26 chr9 10263140 10263304 -132008140 + L1MB4 LINE L1 5660 5816 -364 2215 114 3 0 chr9 10263304 10263611 -132007833 + AluSg SINE Alu 1 308 -2 2055 195 64 26 chr9 10263611 10263957 -132007487 + L1MB4 LINE L1 5816 6179 -1 368 304 185 5 chr9 10265420 10265604 -132005840 - MIR SINE MIR 0 262 46 4482 214 73 10 chr9 10265899 10267184 -132004260 - L1MC2 LINE L1 -16 6608 5126 255 39 20 39 chr9 10267184 10267235 -132004209 + (TA)n Simple_repeat Simple_repeat 2 51 0 4482 214 73 10 chr9 10267235 10268198 -132003246 - L1MC2 LINE L1 -1498 5126 4225 2528 227 19 34 chr9 10268205 10268364 -132003080 - L1MC2 LINE L1 -3145 3281 3121 775 42 0 0 chr9 10268364 10268460 -132002984 - L1MA1 LINE L1 0 6302 6207 2528 227 19 34 chr9 10268460 10269347 -132002097 - L1MC2 LINE L1 -3305 3121 2252 1741 161 38 0 chr9 10269347 10269638 -132001806 - AluJb SINE Alu -8 304 3 261 145 0 0 chr9 10269660 10269722 -132001722 + (T)n Simple_repeat Simple_repeat 1 62 0 2123 215 6 18 chr9 10269756 10270263 -132001181 - L1 LINE L1 -1389 4757 4257 * 2835 187 69 11 chr9 10270262 10271032 -132000412 + L1MB1 LINE L1 5051 5882 -307 190 301 53 35 chr9 10271197 10271310 -132000134 + L2 LINE L2 3184 3298 -15 303 336 92 34 chr9 10271684 10271976 -131999468 - MLT1I LTR MaLR -2 407 99 369 0 0 0 chr9 10272331 10272372 -131999072 + (T)n Simple_repeat Simple_repeat 1 41 0 316 362 71 14 chr9 10273697 10273907 -131997537 - MIR SINE MIR -36 226 5 318 242 0 0 chr9 10275463 10275529 -131995915 - L1M4c LINE L1 -4713 1671 1606 947 130 0 43 chr9 10275674 10275836 -131995608 - LTR1 LTR ERV1 0 785 631 1895 129 57 9 chr9 10275863 10276385 -131995059 - LTR1 LTR ERV1 -146 639 1 322 257 14 0 chr9 10276451 10276521 -131994923 + MER94 DNA DNA 64 134 0 29 0 0 0 chr9 10276681 10276710 -131994734 + AT_rich Low_complexity Low_complexity 1 29 0 669 210 28 55 chr9 10277013 10277194 -131994250 + MIR SINE MIR 86 261 -1 2108 116 20 0 chr9 10277216 10277517 -131993927 + AluSp SINE Alu 1 307 -6 581 313 103 34 chr9 10277766 10278312 -131993132 - L2 LINE L2 -1 3312 2728 25 0 0 0 chr9 10278531 10278556 -131992888 + AT_rich Low_complexity Low_complexity 1 25 0 256 261 77 69 chr9 10278733 10278863 -131992581 + MIR SINE MIR 52 182 -80 1431 189 101 1 chr9 10280873 10281181 -131990263 + MER61B LTR ERV1 1 425 0 342 247 34 0 chr9 10281554 10281643 -131989801 + MLT1H LTR MaLR 458 549 0 467 313 92 5 chr9 10281645 10281840 -131989604 + MIR SINE MIR 49 260 -2 382 336 30 0 chr9 10282278 10282409 -131989035 + L2 LINE L2 3179 3313 0 668 282 116 0 chr9 10282435 10282651 -131988793 + MIR SINE MIR 21 261 -1 191 333 40 0 chr9 10282776 10282851 -131988593 + MER5B DNA MER1_type 1 78 -100 419 219 0 0 chr9 10283210 10283291 -131988153 + MER5A DNA MER1_type 4 84 -105 317 291 46 69 chr9 10283296 10283471 -131987973 - MER5B DNA MER1_type -1 177 7 397 306 140 6 chr9 10284277 10284434 -131987010 + MER5A DNA MER1_type 10 187 -2 276 186 0 0 chr9 10286068 10286127 -131985317 + CT-rich Low_complexity Low_complexity 1 59 0 25 31 0 0 chr9 10286683 10286715 -131984729 + AT_rich Low_complexity Low_complexity 1 32 0 2272 112 0 92 chr9 10287527 10287928 -131983516 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 10289022 10289045 -131982399 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 10289116 10289144 -131982300 + AT_rich Low_complexity Low_complexity 1 28 0 192 217 0 0 chr9 10289257 10289303 -131982141 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 2336 131 11 8 chr9 10289638 10290012 -131981432 + THE1C LTR MaLR 1 375 0 818 289 122 30 chr9 10290120 10290951 -131980493 + L1MEd LINE L1 43 1130 -4989 225 83 0 0 chr9 10290954 10290990 -131980454 + (A)n Simple_repeat Simple_repeat 1 36 0 1940 156 0 10 chr9 10290996 10291310 -131980134 + AluSx SINE Alu 2 312 0 213 39 0 0 chr9 10291397 10291423 -131980021 + (TC)n Simple_repeat Simple_repeat 1 26 0 35 24 0 0 chr9 10291651 10291693 -131979751 + AT_rich Low_complexity Low_complexity 1 42 0 1515 291 132 48 chr9 10291694 10292829 -131978615 - L2 LINE L2 -1 3312 2094 541 269 54 21 chr9 10294892 10295078 -131976366 + MIR SINE MIR 4 195 -67 662 295 49 16 chr9 10295109 10295414 -131976030 - L1ME3A LINE L1 -192 5978 5664 401 363 81 4 chr9 10295572 10295806 -131975638 + MIR SINE MIR 5 256 -6 232 343 0 0 chr9 10296747 10296820 -131974624 + MIR SINE MIR 175 247 -15 314 400 22 17 chr9 10297466 10297696 -131973748 + L1MEd LINE L1 561 791 -5328 204 40 0 0 chr9 10299029 10299054 -131972390 + (TG)n Simple_repeat Simple_repeat 2 26 0 357 218 40 50 chr9 10299890 10299991 -131971453 - MIR3 SINE MIR -32 176 77 183 80 0 0 chr9 10300122 10300147 -131971297 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2862 9 0 0 chr9 10301085 10301401 -131970043 - AluYb8 SINE Alu -2 316 1 417 349 42 16 chr9 10301649 10301838 -131969606 + MIR SINE MIR 57 250 -12 211 394 55 0 chr9 10302715 10302842 -131968602 - L2 LINE L2 0 3272 3139 662 244 37 30 chr9 10302887 10303051 -131968393 + MER45A DNA AcHobo 4 168 -10 198 275 73 73 chr9 10303092 10303201 -131968243 - L2 LINE L2 -167 3146 3038 1751 173 0 0 chr9 10303202 10303491 -131967953 + AluSg SINE Alu 22 310 0 180 254 56 14 chr9 10303879 10303950 -131967494 - L2 LINE L2 -309 2963 2890 279 389 92 11 chr9 10304005 10304288 -131967156 + L2 LINE L2 2444 2749 -565 326 316 34 8 chr9 10304298 10304415 -131967029 + MIR SINE MIR 13 132 -130 199 325 70 13 chr9 10304499 10304656 -131966788 + L2 LINE L2 2764 2929 -385 296 248 91 33 chr9 10305716 10305837 -131965607 + MIR SINE MIR 97 224 -38 434 324 65 12 chr9 10306462 10306632 -131964812 + MIR SINE MIR 23 201 -61 333 0 0 0 chr9 10307116 10307153 -131964291 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr9 10308012 10308037 -131963407 + AT_rich Low_complexity Low_complexity 1 25 0 304 301 109 43 chr9 10308488 10308764 -131962680 + L1ME4a LINE L1 5572 5865 -256 369 258 16 121 chr9 10308986 10309168 -131962276 - MER91B DNA MER1_type -27 163 1 29 0 0 0 chr9 10309327 10309356 -131962088 + AT_rich Low_complexity Low_complexity 1 29 0 189 266 31 0 chr9 10309766 10309830 -131961614 + L2 LINE L2 3236 3301 -12 216 200 0 53 chr9 10309917 10309992 -131961452 + A-rich Low_complexity Low_complexity 2 72 0 705 238 17 50 chr9 10310075 10310256 -131961188 - MIR SINE MIR -10 252 78 1263 207 120 20 chr9 10311167 10311504 -131959940 + MLT1A2 LTR MaLR 4 463 -4 482 327 45 11 chr9 10311541 10311917 -131959527 + L1MEd LINE L1 753 1141 -4978 665 261 125 0 chr9 10312115 10312299 -131959145 + LTR16A LTR ERVL 231 437 -13 346 246 115 4 chr9 10312680 10312815 -131958629 + L1 LINE L1 4217 4362 -1784 558 327 44 25 chr9 10312892 10313166 -131958278 + MLT1H LTR MaLR 72 305 -244 208 110 64 37 chr9 10313345 10313454 -131957990 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 441 147 0 0 chr9 10313467 10313542 -131957902 - MADE1 DNA Mariner -5 75 1 15684 93 2 4 chr9 10313909 10316090 -131955354 + L1P LINE L1 1 2176 -3970 40103 71 3 2 chr9 10316234 10322403 -131949041 + L1PA5 LINE L1 1 6179 0 2159 168 10 22 chr9 10324605 10325022 -131946422 + L1 LINE L1 4419 4830 -1316 303 150 33 0 chr9 10325019 10325079 -131946365 + L1MA6 LINE L1 6230 6291 -9 * 214 169 31 15 chr9 10325144 10325209 -131946235 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 1448 157 45 63 chr9 10325541 10325827 -131945617 + AluJo SINE Alu 1 281 -31 27 29 0 0 chr9 10326014 10326048 -131945396 + AT_rich Low_complexity Low_complexity 1 34 0 494 303 95 35 chr9 10326394 10326711 -131944733 + LTR16C LTR ERVL 156 491 0 23 0 0 0 chr9 10327797 10327820 -131943624 + AT_rich Low_complexity Low_complexity 1 23 0 1312 202 33 85 chr9 10328207 10328573 -131942871 - MLT1B LTR MaLR -42 348 2 588 276 13 0 chr9 10330089 10330245 -131941199 - MIR SINE MIR -53 209 52 23 0 0 0 chr9 10330595 10330618 -131940826 + AT_rich Low_complexity Low_complexity 1 23 0 941 317 50 12 chr9 10331170 10331574 -131939870 - LTR16A LTR ERVL -31 419 1 2077 13 0 0 chr9 10332842 10333077 -131938367 + 7SLRNA srpRNA srpRNA 1 235 -85 254 313 10 20 chr9 10333677 10333776 -131937668 + (TATG)n Simple_repeat Simple_repeat 1 98 0 180 0 0 0 chr9 10334025 10334045 -131937399 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 188 329 0 94 chr9 10334050 10334135 -131937309 - L3b LINE CR1 -24 1559 1483 934 306 122 31 chr9 10334157 10334666 -131936778 + MLT1H1 LTR MaLR 1 555 0 2643 96 8 8 chr9 10336209 10336584 -131934860 - THE1C LTR MaLR 0 375 1 285 245 10 69 chr9 10337340 10337442 -131934002 - L2 LINE L2 -9 3304 3209 5766 109 7 9 chr9 10337442 10338457 -131932987 + L1PA13 LINE L1 5136 6149 -14 931 337 117 10 chr9 10338569 10338961 -131932483 - L2 LINE L2 -340 2974 2541 181 403 16 23 chr9 10338989 10339023 -131932421 - L2 LINE L2 0 3313 3280 1608 146 52 78 chr9 10339023 10339406 -131932038 + THE1C LTR MaLR 1 373 -2 181 403 16 23 chr9 10339406 10339500 -131931944 - L2 LINE L2 -33 3280 3186 4824 110 19 3 chr9 10340519 10340878 -131930566 - L1PB2 LINE L1 0 6151 5799 381 22 0 0 chr9 10340878 10340924 -131930520 + (TG)n Simple_repeat Simple_repeat 2 47 0 4824 110 19 3 chr9 10340924 10341290 -131930154 - L1PB2 LINE L1 -352 5799 5414 417 70 0 0 chr9 10341721 10341778 -131929666 + (CA)n Simple_repeat Simple_repeat 2 58 0 22 70 0 0 chr9 10342112 10342155 -131929289 + AT_rich Low_complexity Low_complexity 1 43 0 250 326 58 29 chr9 10342262 10342642 -131928802 + L1MEd LINE L1 698 1088 -5117 374 339 34 21 chr9 10342797 10343122 -131928322 + L1MEd LINE L1 1316 1644 -4752 26 30 0 0 chr9 10344170 10344203 -131927241 + AT_rich Low_complexity Low_complexity 1 33 0 834 260 10 0 chr9 10344969 10345177 -131926267 + MER63A DNA MER1_type 1 210 0 248 297 54 0 chr9 10345524 10345598 -131925846 - L2 LINE L2 -7 3265 3188 276 100 0 0 chr9 10345613 10345653 -131925791 + (TA)n Simple_repeat Simple_repeat 2 41 0 34 0 0 0 chr9 10346059 10346093 -131925351 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr9 10346170 10346209 -131925235 + AT_rich Low_complexity Low_complexity 1 39 0 612 346 35 4 chr9 10347407 10347661 -131923783 - MIR SINE MIR 0 262 1 1476 206 7 0 chr9 10349453 10349740 -131921704 + AluJb SINE Alu 12 300 -12 481 229 0 9 chr9 10349917 10350026 -131921418 + L1PB4 LINE L1 744 851 -5353 * 5544 196 24 4 chr9 10350016 10352103 -131919341 + L1PB4 LINE L1 4073 6197 -16 329 345 131 35 chr9 10352618 10352931 -131918513 + L2 LINE L2 2966 3308 -5 234 294 0 11 chr9 10354143 10354235 -131917209 + GA-rich Low_complexity Low_complexity 1 91 0 778 217 30 30 chr9 10354417 10354514 -131916930 - L1PA16 LINE L1 0 6166 6070 2777 174 8 4 chr9 10354514 10355009 -131916435 + LOR1a LTR ERV1 1 497 0 778 217 30 30 chr9 10355009 10355114 -131916330 - L1PA16 LINE L1 -95 6071 5964 1575 203 3 3 chr9 10356809 10357095 -131914349 + AluJb SINE Alu 1 286 -26 22 0 0 0 chr9 10357474 10357496 -131913948 + AT_rich Low_complexity Low_complexity 1 22 0 313 299 59 21 chr9 10357613 10357800 -131913644 - L1M4 LINE L1 -1430 4716 4523 216 0 0 0 chr9 10357996 10358020 -131913424 + (T)n Simple_repeat Simple_repeat 1 24 0 2062 131 3 0 chr9 10358088 10358393 -131913051 + AluSx SINE Alu 1 306 -6 429 296 107 67 chr9 10358535 10359089 -131912355 - L1M4 LINE L1 -2229 3917 3342 303 290 137 48 chr9 10359293 10359607 -131911837 - L1M4 LINE L1 -3037 3109 2768 915 172 90 37 chr9 10359816 10360084 -131911360 + MER33 DNA MER1_type 27 308 -16 2801 16 0 0 chr9 10363087 10363400 -131908044 - AluYb8 SINE Alu -5 313 1 5291 188 36 12 chr9 10363733 10365856 -131905588 - L1MA5 LINE L1 0 6300 4126 365 318 68 21 chr9 10366342 10366534 -131904910 - MLT1K LTR MaLR -34 554 354 250 373 47 18 chr9 10366590 10366759 -131904685 - MER5A DNA MER1_type -1 188 15 185 274 129 65 chr9 10366992 10367116 -131904328 - MIR SINE MIR -61 147 16 2095 127 7 0 chr9 10367623 10367931 -131903513 - AluSp SINE Alu -3 310 1 413 257 203 7 chr9 10369307 10369455 -131901989 - MIR SINE MIR -12 250 74 22 70 0 0 chr9 10369580 10369623 -131901821 + AT_rich Low_complexity Low_complexity 1 43 0 258 32 0 0 chr9 10370318 10370349 -131901095 + (CA)n Simple_repeat Simple_repeat 1 31 0 205 330 32 0 chr9 10370450 10370544 -131900900 - MIR SINE MIR -71 191 95 266 0 0 29 chr9 10370696 10370731 -131900713 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 277 318 70 31 chr9 10371903 10372032 -131899412 + MIR SINE MIR 68 201 -61 291 54 0 0 chr9 10372059 10372096 -131899348 + (ATG)n Simple_repeat Simple_repeat 3 39 0 216 361 60 8 chr9 10372253 10372386 -131899058 + MIR SINE MIR 51 190 -72 926 185 58 62 chr9 10372417 10372693 -131898751 - ORSL DNA AcHobo 0 275 1 382 149 0 0 chr9 10373336 10373403 -131898041 - L1MC2 LINE L1 -2 6342 6276 23 78 0 0 chr9 10375094 10375145 -131896299 + AT_rich Low_complexity Low_complexity 1 51 0 923 253 54 54 chr9 10375155 10375527 -131895917 + L1ME3 LINE L1 5789 6160 -2 736 312 40 8 chr9 10375531 10375781 -131895663 - MIR SINE MIR -3 259 2 2313 110 0 0 chr9 10376838 10377148 -131894296 + AluSg SINE Alu 1 310 0 202 338 0 0 chr9 10377475 10377549 -131893895 + T-rich Low_complexity Low_complexity 3 76 0 265 323 136 39 chr9 10377665 10377922 -131893522 + L2 LINE L2 3008 3289 -24 32 26 0 0 chr9 10377960 10377999 -131893445 + AT_rich Low_complexity Low_complexity 1 39 0 4058 42 0 0 chr9 10378027 10378523 -131892921 - L1PA4 LINE L1 0 6155 5660 22 0 0 0 chr9 10378645 10378667 -131892777 + AT_rich Low_complexity Low_complexity 1 22 0 11090 215 70 31 chr9 10379561 10383641 -131887803 + L1MB3 LINE L1 6 4246 -2136 2578 188 19 0 chr9 10383641 10384119 -131887325 + Tigger1 DNA MER2_type 1 487 -1931 5610 152 25 34 chr9 10384121 10384476 -131886968 + Tigger1 DNA MER2_type 1123 1479 -939 2503 72 0 0 chr9 10384476 10384783 -131886661 + AluY SINE Alu 3 309 -2 5610 152 25 34 chr9 10384783 10385498 -131885946 + Tigger1 DNA MER2_type 1479 2184 -234 2514 230 95 7 chr9 10385498 10386185 -131885259 + L1MB3 LINE L1 4539 5285 -1097 2317 189 111 34 chr9 10386377 10387103 -131884341 + LTR28 LTR ERV1 204 1020 0 4723 188 33 19 chr9 10387108 10387532 -131883912 + L1MB3 LINE L1 5300 5717 -702 193 0 94 0 chr9 10387532 10387564 -131883880 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4723 188 33 19 chr9 10387564 10388257 -131883187 + L1MB3 LINE L1 5717 6419 0 364 312 19 0 chr9 10388825 10388963 -131882481 + MIR3 SINE MIR 63 205 -3 267 179 0 0 chr9 10389912 10389979 -131881465 + CT-rich Low_complexity Low_complexity 2 68 0 315 187 0 112 chr9 10391428 10391562 -131879882 + L1 LINE L1 2889 3007 -3139 2441 175 63 15 chr9 10391577 10392102 -131879342 - L1MA10 LINE L1 -2 6332 5783 1973 262 50 7 chr9 10392100 10392681 -131878763 + L1ME2 LINE L1 5530 6135 -29 * 2094 146 14 97 chr9 10393280 10393765 -131877679 + MER65A LTR ERV1 1 445 0 1776 228 33 4 chr9 10394093 10394545 -131876899 + L1 LINE L1 3959 4423 -1723 388 271 83 31 chr9 10394641 10394833 -131876611 + LTR16B LTR ERVL 263 464 0 21 0 0 0 chr9 10395660 10395681 -131875763 + AT_rich Low_complexity Low_complexity 1 21 0 200 279 73 78 chr9 10395812 10395991 -131875453 + L3b LINE CR1 1234 1411 -172 262 279 82 74 chr9 10396551 10397049 -131874395 + L1ME4a LINE L1 5619 6120 -1 22 35 0 0 chr9 10398655 10398684 -131872760 + AT_rich Low_complexity Low_complexity 1 29 0 2829 154 2 21 chr9 10398900 10399381 -131872063 + LOR1a LTR ERV1 26 497 0 28 29 0 0 chr9 10399412 10399447 -131871997 + AT_rich Low_complexity Low_complexity 1 35 0 262 270 52 17 chr9 10399478 10399593 -131871851 + LTR33A LTR ERVL 1 119 -404 241 281 78 66 chr9 10399756 10399923 -131871521 + LTR33A LTR ERVL 346 514 -9 207 305 0 0 chr9 10399977 10400036 -131871408 + L2 LINE L2 3209 3267 -5 21 0 0 0 chr9 10400385 10400406 -131871038 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr9 10405287 10405328 -131866116 + AT_rich Low_complexity Low_complexity 1 41 0 1958 135 0 0 chr9 10406135 10406445 -131864999 - AluSc SINE Alu 0 318 9 829 269 89 27 chr9 10408603 10409243 -131862201 + L1M4 LINE L1 2749 3428 -2718 564 281 26 6 chr9 10409232 10409631 -131861813 + L1M4 LINE L1 4399 4844 -1302 * 204 154 0 0 chr9 10409883 10409935 -131861509 + (TA)n Simple_repeat Simple_repeat 1 52 0 276 258 314 8 chr9 10410537 10410661 -131860783 + MER5A DNA MER1_type 24 185 -4 2261 105 3 0 chr9 10411493 10411797 -131859647 + AluSp SINE Alu 1 305 -8 25 31 0 0 chr9 10412288 10412320 -131859124 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr9 10412748 10412778 -131858666 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr9 10413063 10413083 -131858361 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 310 283 112 52 chr9 10413210 10413443 -131858001 + L2 LINE L2 1869 2115 -1199 363 256 101 23 chr9 10413503 10413632 -131857812 + MLT1K LTR MaLR 83 221 -367 322 268 41 32 chr9 10413715 10413838 -131857606 + MLT1K LTR MaLR 352 475 -113 226 250 0 54 chr9 10413873 10413929 -131857515 + polypyrimidine Low_complexity Low_complexity 4 56 0 2281 54 7 0 chr9 10414455 10414770 -131856674 - AluY SINE Alu 0 319 3 289 315 20 0 chr9 10415471 10415591 -131855853 - L1ME3 LINE L1 -53 6109 5988 711 281 109 19 chr9 10415674 10416041 -131855403 - L1ME3 LINE L1 -216 5954 5555 27 0 0 0 chr9 10416051 10416078 -131855366 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr9 10416503 10416525 -131854919 + AT_rich Low_complexity Low_complexity 1 22 0 988 322 49 16 chr9 10417553 10418041 -131853403 + L1MEc LINE L1 454 957 -5764 432 315 70 32 chr9 10418112 10418483 -131852961 + L1MEc LINE L1 1521 1905 -4635 * 1088 207 66 68 chr9 10418474 10418544 -131852900 + L1ME1 LINE L1 5022 5091 -1075 2146 110 20 3 chr9 10418544 10418845 -131852599 - AluSg SINE Alu 0 310 5 1088 207 66 68 chr9 10418845 10419436 -131852008 + L1ME1 LINE L1 5091 5678 -488 266 259 9 19 chr9 10419438 10419546 -131851898 + (TA)n Simple_repeat Simple_repeat 1 107 0 2824 175 39 3 chr9 10419571 10420182 -131851262 + L1MA4A LINE L1 2934 3566 -2580 3012 153 26 34 chr9 10420184 10420797 -131850647 + L1MA4A LINE L1 5685 6292 -11 353 222 0 44 chr9 10420814 10420904 -131850540 + L1ME1 LINE L1 5774 5859 -307 1143 203 64 4 chr9 10421170 10421436 -131850008 - L1MB5 LINE L1 -305 5869 5588 204 256 26 0 chr9 10421509 10421587 -131849857 + (TA)n Simple_repeat Simple_repeat 1 80 0 207 284 49 78 chr9 10424510 10424612 -131846832 - L2 LINE L2 -18 3295 3197 209 320 73 87 chr9 10426737 10426943 -131844501 - MIR SINE MIR -7 255 53 23 33 0 0 chr9 10427490 10427520 -131843924 + AT_rich Low_complexity Low_complexity 1 30 0 744 322 107 30 chr9 10428526 10429020 -131842424 - L2 LINE L2 0 3313 2778 275 356 34 0 chr9 10429862 10429980 -131841464 - L2 LINE L2 -2 3311 3190 250 364 28 14 chr9 10430316 10430459 -131840985 - L2 LINE L2 -1855 1459 1315 265 252 39 79 chr9 10430474 10430601 -131840843 + L1ME2 LINE L1 18 139 -6284 320 287 89 63 chr9 10430871 10431108 -131840336 + MLT1H1 LTR MaLR 187 429 -126 659 249 51 68 chr9 10431514 10431908 -131839536 + L1ME2 LINE L1 3825 4211 -2730 * 2302 232 75 48 chr9 10431900 10432991 -131838453 + L1ME2 LINE L1 5738 6854 -105 23 68 0 0 chr9 10433071 10433115 -131838329 + AT_rich Low_complexity Low_complexity 1 44 0 194 0 0 37 chr9 10433309 10433336 -131838108 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 291 273 140 13 chr9 10434092 10434242 -131837202 + MARNA DNA Mariner 91 259 -327 28 0 0 0 chr9 10434377 10434405 -131837039 + AT_rich Low_complexity Low_complexity 1 28 0 3235 176 70 16 chr9 10434599 10435243 -131836201 - L1MC1 LINE L1 -13 6320 5642 2102 227 44 70 chr9 10435247 10435974 -131835470 - L1MC1 LINE L1 -1312 4834 4127 202 214 45 135 chr9 10436307 10436396 -131835048 - MIR SINE MIR 0 262 182 1705 167 48 80 chr9 10436547 10437007 -131834437 + MER65A LTR ERV1 1 445 0 368 298 86 20 chr9 10437069 10437220 -131834224 + MIR SINE MIR 96 256 -6 1294 279 57 46 chr9 10437351 10437414 -131834030 + L1ME LINE L1 2041 2102 -4839 252 0 0 0 chr9 10437414 10437442 -131834002 + (CA)n Simple_repeat Simple_repeat 1 28 0 1294 279 57 46 chr9 10437442 10438015 -131833429 + L1ME LINE L1 2102 2667 -4274 1545 112 40 0 chr9 10438015 10438239 -131833205 - AluSg/x SINE Alu -2 308 76 1294 279 57 46 chr9 10438239 10438676 -131832768 + L1ME LINE L1 2667 3491 -3450 855 221 51 72 chr9 10438674 10439159 -131832285 + L1ME LINE L1 5835 6306 -653 * 384 196 88 10 chr9 10439161 10439263 -131832181 + L1ME LINE L1 6389 6498 -461 * 931 255 39 23 chr9 10439259 10439565 -131831879 + L1MC/D LINE L1 4837 5147 -999 1944 164 112 0 chr9 10439587 10439952 -131831492 + MLT2C2 LTR ERVL 10 415 -49 338 156 66 42 chr9 10440007 10440174 -131831270 + (TATATG)n Simple_repeat Simple_repeat 2 172 0 275 133 0 0 chr9 10440182 10440227 -131831217 + MLT2C2 LTR ERVL 459 503 -12 1630 212 66 22 chr9 10440238 10440783 -131830661 + L1MC/D LINE L1 5146 5709 -650 349 239 116 29 chr9 10441669 10441807 -131829637 - MIR SINE MIR -21 241 92 22 56 0 0 chr9 10442654 10442690 -131828754 + AT_rich Low_complexity Low_complexity 1 36 0 345 301 47 31 chr9 10442946 10443139 -131828305 - MIR SINE MIR -10 252 57 2553 127 72 2 chr9 10445609 10446026 -131825418 - Tigger2 DNA MER2_type 0 2718 2273 372 157 29 14 chr9 10446013 10446083 -131825361 - Tigger2 DNA MER2_type -2646 72 2 * 3537 165 46 16 chr9 10446736 10447400 -131824044 + MER4D LTR ERV1 1 684 -219 3188 127 47 61 chr9 10447400 10448023 -131823421 - LTR18B LTR ERVL 0 614 1 3071 191 5 29 chr9 10448224 10448780 -131822664 - HERVL18 LTR ERVL -2556 3491 2949 728 196 23 0 chr9 10448776 10448909 -131822535 - HERVL18 LTR ERVL -2963 3084 2949 * 1191 177 54 6 chr9 10448905 10449183 -131822261 - HERVL18 LTR ERVL -2963 3084 2718 715 160 8 6 chr9 10449180 10449408 -131822036 - HERVL18 LTR ERVL -3595 2452 2119 * 1056 205 22 7 chr9 10449407 10449774 -131821670 - HERVL18 LTR ERVL -4237 1810 1375 1497 205 14 4 chr9 10449973 10450251 -131821193 - HERVL18 LTR ERVL -5760 287 7 2961 132 52 55 chr9 10450263 10450879 -131820565 - LTR18B LTR ERVL 0 614 1 1204 178 9 13 chr9 10450879 10451104 -131820340 + MER4D LTR ERV1 680 903 0 1690 299 92 46 chr9 10451366 10452630 -131818814 + L2 LINE L2 2005 3311 -2 195 312 143 26 chr9 10453542 10453696 -131817748 - MER5A DNA MER1_type 0 189 18 221 359 46 38 chr9 10453761 10453892 -131817552 - MER5B DNA MER1_type -25 153 22 23 0 0 0 chr9 10454051 10454074 -131817370 + AT_rich Low_complexity Low_complexity 1 23 0 307 390 0 8 chr9 10454074 10454192 -131817252 + MER5A DNA MER1_type 73 189 0 261 0 0 0 chr9 10454502 10454531 -131816913 + (T)n Simple_repeat Simple_repeat 1 29 0 180 375 29 39 chr9 10455963 10456067 -131815377 - MIR SINE MIR -140 122 20 21 0 0 0 chr9 10456648 10456669 -131814775 + AT_rich Low_complexity Low_complexity 1 21 0 222 284 27 14 chr9 10456710 10456784 -131814660 - L2 LINE L2 -194 3078 3004 674 324 110 55 chr9 10457256 10457839 -131813605 + MLT1L LTR MaLR 1 615 0 187 373 28 28 chr9 10457841 10457983 -131813461 - MIR3 SINE MIR -6 202 61 265 263 53 13 chr9 10458497 10458573 -131812871 + L2 LINE L2 3189 3267 -5 183 80 0 0 chr9 10459814 10459839 -131811605 + (TTA)n Simple_repeat Simple_repeat 2 26 0 24 103 0 0 chr9 10461373 10461460 -131809984 + AT_rich Low_complexity Low_complexity 1 87 0 305 257 29 48 chr9 10461552 10461758 -131809686 + L1ME3A LINE L1 5009 5210 -936 519 252 0 8 chr9 10461787 10461906 -131809538 + MER63 DNA MER1_type 1 744 -92 230 129 12 71 chr9 10462156 10462241 -131809203 + L1MC4 LINE L1 6624 6703 -1339 269 239 14 0 chr9 10462242 10462313 -131809131 + (TA)n Simple_repeat Simple_repeat 1 72 0 1018 251 103 68 chr9 10462315 10463153 -131808291 + L1ME3A LINE L1 5282 6160 -2 24 32 0 0 chr9 10463192 10463223 -131808221 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr9 10463625 10463661 -131807783 + AT_rich Low_complexity Low_complexity 1 36 0 2281 97 7 3 chr9 10465056 10465414 -131806030 + AluSg SINE Alu 1 359 0 1820 170 6 3 chr9 10466899 10467210 -131804234 + AluJb SINE Alu 1 312 0 2266 118 0 0 chr9 10467383 10467689 -131803755 + AluSx SINE Alu 3 308 -4 27 0 0 0 chr9 10468162 10468189 -131803255 + AT_rich Low_complexity Low_complexity 1 27 0 303 321 290 0 chr9 10468497 10468690 -131802754 - MIR SINE MIR -2 260 12 560 300 58 5 chr9 10468852 10469042 -131802402 - MIR SINE MIR -10 252 53 1235 107 54 29 chr9 10469050 10469255 -131802189 - L1PA10 LINE L1 -4 6164 5955 4700 158 21 37 chr9 10469325 10470156 -131801288 - L1PB4 LINE L1 -5 6151 5334 2177 126 0 0 chr9 10470156 10470466 -131800978 - AluSx SINE Alu -2 310 1 4700 158 21 37 chr9 10470466 10470624 -131800820 - L1PB4 LINE L1 -822 5334 5175 22 0 0 0 chr9 10470787 10470809 -131800635 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 33 33 chr9 10471465 10471557 -131799887 - L2 LINE L2 0 3272 3181 639 309 116 56 chr9 10471731 10472145 -131799299 + MLT1J LTR MaLR 1 439 -72 346 227 13 8 chr9 10472147 10472278 -131799166 + L1MB7 LINE L1 5951 6184 0 285 194 30 45 chr9 10473623 10473690 -131797754 - MER5A DNA MER1_type 0 189 124 253 204 19 0 chr9 10473700 10473754 -131797690 + MER5A DNA MER1_type 55 109 -80 189 0 0 0 chr9 10473977 10473998 -131797446 + (TTA)n Simple_repeat Simple_repeat 2 22 0 315 341 66 57 chr9 10474922 10475288 -131796156 + L2 LINE L2 2132 2500 -814 1777 206 12 38 chr9 10475326 10475797 -131795647 - MER89 LTR ERV1 -2 557 1 220 274 32 16 chr9 10476757 10476819 -131794625 + MIR SINE MIR 48 110 -152 22 56 0 0 chr9 10476828 10476864 -131794580 + AT_rich Low_complexity Low_complexity 1 36 0 456 323 37 1 chr9 10476909 10477082 -131794362 - MIR SINE MIR -44 218 45 430 194 291 15 chr9 10477196 10477330 -131794114 - MER5A DNA MER1_type 0 189 19 2133 163 50 5 chr9 10477330 10477766 -131793678 + L1MA4A LINE L1 5848 6303 0 22 35 0 0 chr9 10478938 10478967 -131792477 + AT_rich Low_complexity Low_complexity 1 29 0 403 213 131 0 chr9 10479283 10479405 -131792039 - MER104 DNA Tc2 -13 167 30 269 346 23 0 chr9 10479461 10479591 -131791853 + L1ME LINE L1 5492 5624 -497 378 333 29 0 chr9 10479882 10479987 -131791457 + L2 LINE L2 3193 3300 -13 24 0 0 0 chr9 10480221 10480245 -131791199 + AT_rich Low_complexity Low_complexity 1 24 0 2213 226 51 36 chr9 10480608 10481218 -131790226 + MLT1E2 LTR MaLR 1 619 -7 1954 145 54 0 chr9 10481293 10481644 -131789800 - L1MA6 LINE L1 0 6300 5931 221 148 0 19 chr9 10481923 10481977 -131789467 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 2067 153 0 0 chr9 10482384 10482692 -131788752 + AluSx SINE Alu 5 312 0 308 122 23 0 chr9 10482692 10482777 -131788667 + GA-rich Low_complexity Low_complexity 1 86 0 203 0 37 0 chr9 10482809 10482836 -131788608 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 191 122 0 24 chr9 10482968 10483009 -131788435 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 2065 218 14 6 chr9 10483883 10484375 -131787069 - L1PB1 LINE L1 -988 5158 4663 * 3041 100 0 10 chr9 10484372 10484895 -131786549 + L1PB1 LINE L1 5164 5682 -469 442 118 39 33 chr9 10484895 10485048 -131786396 + (TA)n Simple_repeat Simple_repeat 1 154 0 297 51 0 0 chr9 10485079 10485156 -131786288 + (TG)n Simple_repeat Simple_repeat 1 116 0 297 51 0 0 chr9 10485156 10485195 -131786249 + (TG)n Simple_repeat Simple_repeat 2 40 0 2301 132 3 5 chr9 10485201 10485571 -131785873 + L1PB1 LINE L1 5783 6151 0 23 0 0 0 chr9 10485571 10485594 -131785850 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr9 10488092 10488125 -131783319 + AT_rich Low_complexity Low_complexity 1 33 0 220 320 43 38 chr9 10488393 10488509 -131782935 + MIR SINE MIR 1 124 -84 286 344 57 53 chr9 10488775 10489022 -131782422 - MIR SINE MIR 0 262 15 300 274 37 53 chr9 10489099 10489289 -131782155 - L1MEd LINE L1 -4955 1164 978 353 304 85 36 chr9 10489354 10489601 -131781843 + L1M4 LINE L1 4317 4575 -1571 198 71 0 0 chr9 10490016 10490044 -131781400 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 357 24 0 0 chr9 10490729 10490771 -131780673 + (TG)n Simple_repeat Simple_repeat 1 42 0 399 257 91 67 chr9 10491283 10491493 -131779951 - L2 LINE L2 -2 3311 3097 26 0 0 0 chr9 10491973 10491999 -131779445 + AT_rich Low_complexity Low_complexity 1 26 0 245 309 49 0 chr9 10492110 10492191 -131779253 + MIR SINE MIR 118 202 -60 1753 191 15 9 chr9 10493067 10493402 -131778042 + MER1B DNA MER1_type 1 337 0 528 105 42 0 chr9 10493460 10493555 -131777889 - L1PA15 LINE L1 -2 6163 6065 28 0 0 0 chr9 10493598 10493626 -131777818 + AT_rich Low_complexity Low_complexity 1 28 0 224 380 96 0 chr9 10495167 10495333 -131776111 - L2 LINE L2 -527 2787 2606 360 0 0 0 chr9 10496583 10496623 -131774821 + (A)n Simple_repeat Simple_repeat 1 40 0 275 319 69 9 chr9 10496966 10497082 -131774362 - MIR SINE MIR -18 244 122 363 338 58 0 chr9 10497716 10497855 -131773589 + MIR SINE MIR 116 262 0 191 122 0 24 chr9 10498985 10499026 -131772418 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2066 137 0 0 chr9 10499073 10499379 -131772065 - AluSx SINE Alu -5 307 2 313 287 75 46 chr9 10499519 10499693 -131771751 + MER102b DNA MER1_type 154 332 -9 300 279 68 14 chr9 10500351 10500498 -131770946 - L1ME4a LINE L1 -3 6118 5964 183 163 0 70 chr9 10500534 10500577 -131770867 + L2 LINE L2 3234 3273 -40 404 261 179 31 chr9 10500599 10500856 -131770588 - L1ME4a LINE L1 -170 5951 5657 400 236 250 0 chr9 10502580 10502720 -131768724 - MER5A DNA MER1_type 0 189 15 396 59 0 0 chr9 10502740 10502791 -131768653 + (TA)n Simple_repeat Simple_repeat 1 51 0 306 282 254 7 chr9 10503302 10503444 -131768000 + MER5A DNA MER1_type 13 189 0 258 281 83 10 chr9 10503611 10503707 -131767737 + MIR SINE MIR 151 253 -9 252 217 17 0 chr9 10503713 10503773 -131767671 + (TA)n Simple_repeat Simple_repeat 2 62 0 617 176 111 33 chr9 10504481 10504634 -131766810 + LTR41 LTR ERVL 1 165 -608 272 203 0 17 chr9 10505192 10505251 -131766193 + LTR41 LTR ERVL 710 767 -6 456 297 104 25 chr9 10505341 10505543 -131765901 - MIR SINE MIR -44 218 1 547 220 68 17 chr9 10505780 10505957 -131765487 - MER53 DNA DNA -3 186 1 873 129 14 14 chr9 10506314 10506461 -131764983 + MER41B LTR ERV1 392 538 -97 673 98 20 0 chr9 10506461 10506563 -131764881 - L1P LINE L1 -3327 2819 2716 308 203 9 59 chr9 10506565 10506675 -131764769 + MER41A LTR ERV1 403 474 -12 216 339 57 42 chr9 10507119 10507311 -131764133 - L2 LINE L2 -234 3038 2844 2595 48 0 0 chr9 10507408 10507719 -131763725 + AluY SINE Alu 1 311 0 671 341 165 14 chr9 10508054 10508973 -131762471 - L2 LINE L2 -689 2625 1568 356 226 33 2 chr9 10509049 10509590 -131761854 + (TA)n Simple_repeat Simple_repeat 1 557 0 267 133 0 0 chr9 10509591 10509636 -131761808 + (GA)n Simple_repeat Simple_repeat 1 45 0 183 250 0 0 chr9 10509899 10509935 -131761509 + L2 LINE L2 3191 3226 -87 312 283 43 0 chr9 10513266 10513358 -131758086 + MER5A DNA MER1_type 15 110 -79 210 37 0 0 chr9 10513891 10513918 -131757526 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1955 137 0 18 chr9 10513920 10514205 -131757239 - AluSx SINE Alu -32 280 1 940 277 5 9 chr9 10515510 10515730 -131755714 - MER58A DNA MER1_type 0 224 6 280 311 44 11 chr9 10515938 10516028 -131755416 + L2 LINE L2 3208 3300 -13 186 209 0 0 chr9 10516167 10516210 -131755234 + GA-rich Low_complexity Low_complexity 4 46 0 192 344 109 27 chr9 10516282 10516465 -131754979 - MIR SINE MIR -50 212 15 1909 131 28 3 chr9 10516649 10516931 -131754513 + AluSx SINE Alu 1 289 -23 248 275 100 0 chr9 10517414 10517494 -131753950 - L2 LINE L2 -1 3312 3225 25 75 0 0 chr9 10518450 10518503 -131752941 + AT_rich Low_complexity Low_complexity 1 53 0 2249 93 6 13 chr9 10518509 10518821 -131752623 + AluSg SINE Alu 1 310 0 328 179 12 12 chr9 10518837 10518921 -131752523 + (TA)n Simple_repeat Simple_repeat 2 85 0 23 78 0 0 chr9 10520336 10520387 -131751057 + AT_rich Low_complexity Low_complexity 1 51 0 186 344 33 0 chr9 10520456 10520517 -131750927 + L2 LINE L2 3246 3308 -5 261 299 41 21 chr9 10520679 10520776 -131750668 + MIR SINE MIR 1 99 -163 297 0 0 0 chr9 10520810 10520843 -131750601 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1989 202 38 44 chr9 10521691 10522196 -131749248 + L1MB7 LINE L1 5667 6168 -16 201 321 46 38 chr9 10522443 10522574 -131748870 - L2 LINE L2 -223 3049 2918 2025 137 0 22 chr9 10522630 10522943 -131748501 + AluSx SINE Alu 1 306 -6 349 304 10 57 chr9 10525315 10525509 -131745935 + L2 LINE L2 2427 2611 -703 233 197 0 33 chr9 10526063 10526124 -131745320 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 255 343 133 20 chr9 10526135 10526383 -131745061 + MLT1L LTR MaLR 220 495 -120 930 222 33 111 chr9 10526385 10526781 -131744663 - MLT1A1 LTR MaLR 0 365 1 6218 234 122 10 chr9 10526782 10528342 -131743102 - MLT1A1-int LTR MaLR -1 1734 1 789 172 126 128 chr9 10528342 10528708 -131742736 - MLT1A1 LTR MaLR 0 365 1 298 298 44 51 chr9 10528801 10528959 -131742485 + L2 LINE L2 3156 3312 -1 211 364 146 12 chr9 10529047 10529212 -131742232 - L3 LINE CR1 -377 1200 1014 743 335 80 29 chr9 10529652 10530175 -131741269 + MLT1K LTR MaLR 37 586 -2 4728 85 15 14 chr9 10531129 10531553 -131739891 + PABL_A LTR ERV1 1 428 -232 4307 10 0 0 chr9 10531553 10532041 -131739403 + L1PA2 LINE L1 5663 6150 -5 4728 85 15 14 chr9 10532041 10532275 -131739169 + PABL_A LTR ERV1 428 660 0 451 310 23 40 chr9 10532361 10532535 -131738909 - MIR SINE MIR -47 215 45 208 344 21 10 chr9 10532701 10532797 -131738647 - MER5A DNA MER1_type -78 111 15 897 180 16 86 chr9 10534195 10534440 -131737004 + LTR1B LTR ERV1 1 228 -598 936 194 150 70 chr9 10534455 10534843 -131736601 + LTR1B LTR ERV1 347 775 -10 421 257 38 0 chr9 10534843 10534948 -131736496 + MIR SINE MIR 83 191 -71 255 61 0 0 chr9 10535065 10535098 -131736346 + (TA)n Simple_repeat Simple_repeat 1 33 0 301 175 0 0 chr9 10535520 10535583 -131735861 - L1MA3 LINE L1 -3 6302 6240 225 263 152 79 chr9 10535795 10535920 -131735524 - L1MEc LINE L1 -4702 1608 1494 474 33 0 0 chr9 10535920 10535980 -131735464 + (TG)n Simple_repeat Simple_repeat 2 61 0 225 263 152 79 chr9 10535980 10536261 -131735183 - L1MEc LINE L1 -4816 1494 1172 1510 141 121 33 chr9 10536270 10536575 -131734869 - MER44D DNA MER2_type -1 608 7 469 325 90 62 chr9 10536628 10537431 -131734013 - L1MEc LINE L1 -5026 1093 269 31 26 0 0 chr9 10539432 10539470 -131731974 + AT_rich Low_complexity Low_complexity 1 38 0 1547 145 92 45 chr9 10539618 10539976 -131731468 + THE1C LTR MaLR 1 375 0 1236 163 54 0 chr9 10539977 10540198 -131731246 - L1P LINE L1 -2283 3863 3631 1417 113 24 0 chr9 10540198 10540408 -131731036 + L1PA13 LINE L1 5945 6161 -2 28 79 0 0 chr9 10540479 10540542 -131730902 + AT_rich Low_complexity Low_complexity 1 63 0 286 297 81 0 chr9 10540612 10540723 -131730721 - MIR SINE MIR -73 189 70 3755 99 13 2 chr9 10540859 10541405 -131730039 - L1PA13 LINE L1 -2 6161 5610 2254 89 6 25 chr9 10541444 10541759 -131729685 - AluY SINE Alu -2 309 1 1947 145 7 3 chr9 10542235 10542531 -131728913 - AluSq SINE Alu -16 297 1 2917 3 0 0 chr9 10542678 10542996 -131728448 + AluYb8 SINE Alu 1 318 0 23 33 0 0 chr9 10543548 10543578 -131727866 + AT_rich Low_complexity Low_complexity 1 30 0 225 281 0 0 chr9 10544027 10544084 -131727360 + L1MD3 LINE L1 6619 6675 -1320 219 103 0 0 chr9 10544610 10544649 -131726795 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr9 10544710 10544731 -131726713 + AT_rich Low_complexity Low_complexity 1 21 0 4989 163 32 61 chr9 10544768 10544905 -131726539 + L1MC1 LINE L1 5185 5324 -1009 1960 151 3 0 chr9 10544905 10545189 -131726255 + AluSx SINE Alu 1 285 -27 564 15 0 0 chr9 10545193 10545258 -131726186 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 4989 163 32 61 chr9 10545258 10545313 -131726131 + L1MC1 LINE L1 5327 5382 -951 1980 139 0 0 chr9 10545313 10545607 -131725837 + AluSx SINE Alu 1 294 -18 4989 163 32 61 chr9 10545607 10546572 -131724872 + L1MC1 LINE L1 5382 6325 -8 254 312 0 26 chr9 10546681 10546758 -131724686 + L2 LINE L2 3239 3313 0 23 68 0 0 chr9 10546798 10546842 -131724602 + AT_rich Low_complexity Low_complexity 1 44 0 2437 105 14 3 chr9 10546867 10547230 -131724214 + L1PA7 LINE L1 5787 6153 -1 242 313 75 75 chr9 10547912 10548139 -131723305 + L2 LINE L2 3074 3300 -13 395 261 244 6 chr9 10548375 10548555 -131722889 - MIR SINE MIR -10 252 30 533 245 126 13 chr9 10549029 10549188 -131722256 + MER5B DNA MER1_type 2 178 0 22 56 0 0 chr9 10549644 10549680 -131721764 + AT_rich Low_complexity Low_complexity 1 36 0 695 271 65 81 chr9 10549781 10550212 -131721232 - L2 LINE L2 -476 2838 2415 23 33 0 0 chr9 10552993 10553023 -131718421 + AT_rich Low_complexity Low_complexity 1 30 0 218 372 69 13 chr9 10553085 10553316 -131718128 + L2 LINE L2 2289 2532 -782 32 0 0 0 chr9 10553792 10553824 -131717620 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr9 10554550 10554572 -131716872 + AT_rich Low_complexity Low_complexity 1 22 0 242 363 40 16 chr9 10555133 10555257 -131716187 - MIR SINE MIR -115 147 21 341 290 62 16 chr9 10555789 10555982 -131715462 + L1ME4a LINE L1 5710 5911 -210 277 322 18 53 chr9 10557518 10557689 -131713755 - MER5A DNA MER1_type -3 186 22 312 45 0 0 chr9 10558900 10558944 -131712500 - L1PA3 LINE L1 0 6155 6112 879 45 0 0 chr9 10558944 10559054 -131712390 + L1P2 LINE L1 5630 5739 -415 345 0 0 0 chr9 10560029 10560068 -131711376 + THE1B LTR MaLR 1 39 -325 8297 107 19 32 chr9 10560068 10561335 -131710109 + THE1A-int LTR MaLR 330 1580 0 2212 124 11 11 chr9 10561335 10561690 -131709754 + THE1A LTR MaLR 1 355 0 655 312 51 4 chr9 10562166 10562400 -131709044 - MIR SINE MIR -1 261 17 321 344 49 0 chr9 10563062 10563184 -131708260 + L2 LINE L2 3143 3270 -2 242 206 0 32 chr9 10563295 10563358 -131708086 + L1MEd LINE L1 1231 1291 -5081 267 350 0 0 chr9 10563691 10563811 -131707633 + L1MEd LINE L1 1577 1696 -4688 208 176 39 20 chr9 10563957 10564008 -131707436 + A-rich Low_complexity Low_complexity 1 52 0 344 337 36 29 chr9 10564351 10564627 -131706817 + L1MEd LINE L1 2453 2730 -3652 22 35 0 0 chr9 10564731 10564760 -131706684 + AT_rich Low_complexity Low_complexity 1 29 0 545 231 50 0 chr9 10565150 10565271 -131706173 - FLAM_A SINE Alu -6 127 1 1275 37 25 0 chr9 10566291 10566452 -131704992 - L1PA5 LINE L1 -189 5965 5801 1285 61 0 0 chr9 10566452 10566611 -131704833 + L1PA5 LINE L1 5989 6151 -3 351 333 71 29 chr9 10567179 10567389 -131704055 - MIR SINE MIR -13 249 31 2063 136 0 3 chr9 10568925 10569220 -131702224 + AluSx SINE Alu 1 294 -18 354 325 102 0 chr9 10569547 10569704 -131701740 - MIR SINE MIR 0 262 90 32 26 0 0 chr9 10569994 10570033 -131701411 + AT_rich Low_complexity Low_complexity 1 39 0 2002 270 18 18 chr9 10570657 10571202 -131700242 - MLT1H1 LTR MaLR -10 545 1 964 220 11 5 chr9 10571585 10571776 -131699668 + AluJb SINE Alu 104 295 -17 28 0 0 0 chr9 10572044 10572072 -131699372 + AT_rich Low_complexity Low_complexity 1 28 0 370 304 152 13 chr9 10572081 10572239 -131699205 - MER5A DNA MER1_type 0 189 10 518 115 13 0 chr9 10572309 10572387 -131699057 - MSTA LTR MaLR 0 428 350 2003 143 0 6 chr9 10573077 10573391 -131698053 - AluSx SINE Alu 0 312 1 21 0 0 0 chr9 10574170 10574191 -131697253 + AT_rich Low_complexity Low_complexity 1 21 0 202 349 70 104 chr9 10574205 10574446 -131696998 + L2 LINE L2 3035 3267 -5 25 31 0 0 chr9 10574962 10574994 -131696450 + AT_rich Low_complexity Low_complexity 1 32 0 4867 235 47 11 chr9 10575903 10578039 -131693405 + L1MA4 LINE L1 2005 4227 -3338 2762 203 18 3 chr9 10578030 10578642 -131692802 + L1MA4 LINE L1 4812 5432 -2133 * 5802 224 64 22 chr9 10578643 10580390 -131691054 + L1MA2 LINE L1 513 2677 -4888 1280 202 91 23 chr9 10580398 10580749 -131690695 - THE1C LTR MaLR 0 375 1 6732 158 23 4 chr9 10580749 10582805 -131688639 + L1MA2 LINE L1 5489 7584 -139 1496 176 60 3 chr9 10582909 10583228 -131688216 + L1MA2 LINE L1 5968 6304 0 4583 184 47 13 chr9 10583230 10584867 -131686577 + L1MA4 LINE L1 6027 7719 0 245 287 117 0 chr9 10584967 10585061 -131686383 - MIR SINE MIR -71 191 87 228 236 42 0 chr9 10585260 10585332 -131686112 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1636 192 40 32 chr9 10586016 10586386 -131685058 - THE1C LTR MaLR -2 373 1 520 43 0 0 chr9 10586597 10586667 -131684777 - L1PA3 LINE L1 0 6155 6086 241 311 66 19 chr9 10587260 10587366 -131684078 + L2 LINE L2 3162 3272 0 347 229 202 27 chr9 10587534 10587722 -131683722 - L1ME3 LINE L1 -4 6158 5938 24 0 0 0 chr9 10587753 10587777 -131683667 + AT_rich Low_complexity Low_complexity 1 24 0 206 287 35 9 chr9 10588875 10588990 -131682454 + (TA)n Simple_repeat Simple_repeat 2 119 0 364 339 90 17 chr9 10589192 10589425 -131682019 - MIR SINE MIR 0 262 13 267 31 0 0 chr9 10589510 10589542 -131681902 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr9 10594201 10594222 -131677222 + AT_rich Low_complexity Low_complexity 1 21 0 213 121 0 0 chr9 10594989 10595022 -131676422 + (GA)n Simple_repeat Simple_repeat 1 33 0 25 0 0 0 chr9 10595264 10595289 -131676155 + AT_rich Low_complexity Low_complexity 1 25 0 9167 38 1 0 chr9 10595751 10596864 -131674580 - L1PA4 LINE L1 -1240 4906 3793 7281 37 5 1 chr9 10596864 10598101 -131673343 + L1PA4 LINE L1 4911 6149 -6 2359 32 0 0 chr9 10598794 10599077 -131672367 + L1PA4 LINE L1 5862 6144 -11 324 302 65 22 chr9 10599138 10599370 -131672074 - L1MEd LINE L1 -2242 4140 3899 444 289 99 44 chr9 10599571 10600151 -131671293 - L1MEd LINE L1 -2744 3638 2967 344 337 36 29 chr9 10600397 10600673 -131670771 - L1MEd LINE L1 -3652 2730 2453 208 176 39 20 chr9 10601016 10601067 -131670377 + T-rich Low_complexity Low_complexity 1 52 0 242 306 37 30 chr9 10601199 10601333 -131670111 - L1MEd LINE L1 -4673 1711 1577 313 288 23 45 chr9 10601666 10601798 -131669646 - L1MEd LINE L1 -5081 1291 1163 281 353 49 0 chr9 10601840 10601962 -131669482 - L2 LINE L2 -2 3270 3143 647 312 51 4 chr9 10602627 10602861 -131668583 + MIR SINE MIR 17 261 -1 25 0 0 0 chr9 10603631 10603656 -131667788 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 10605162 10605185 -131666259 + AT_rich Low_complexity Low_complexity 1 23 0 2426 58 3 0 chr9 10605386 10605680 -131665764 + AluY SINE Alu 1 295 -16 312 304 82 26 chr9 10605689 10605883 -131665561 + L1M4 LINE L1 2379 2583 -3563 363 248 183 30 chr9 10605927 10606157 -131665287 + L1M4 LINE L1 2690 2954 -3192 22 35 0 0 chr9 10607617 10607646 -131663798 + AT_rich Low_complexity Low_complexity 1 29 0 520 273 155 9 chr9 10611636 10611975 -131659469 - L1ME1 LINE L1 -201 5965 5587 429 283 121 36 chr9 10612032 10612671 -131658773 - L1ME1 LINE L1 -687 5479 4787 3028 185 77 65 chr9 10612774 10613421 -131658023 - L1MB7 LINE L1 -24 6160 5522 2064 50 0 0 chr9 10613421 10613681 -131657763 + L1PA4 LINE L1 5894 6153 -2 3028 185 77 65 chr9 10613681 10613857 -131657587 - L1MB7 LINE L1 -662 5522 5307 2167 111 16 10 chr9 10613857 10614164 -131657280 - AluSx SINE Alu -3 309 1 3028 185 77 65 chr9 10614164 10614276 -131657168 - L1MB7 LINE L1 -877 5307 5198 23 33 0 0 chr9 10614438 10614468 -131656976 + AT_rich Low_complexity Low_complexity 1 30 0 211 277 0 0 chr9 10614555 10614602 -131656842 + (CATG)n Simple_repeat Simple_repeat 3 49 0 319 347 96 6 chr9 10614602 10614769 -131656675 - L1ME1 LINE L1 -1992 4154 3973 398 280 146 57 chr9 10614854 10615537 -131655907 - L1ME1 LINE L1 -2713 3433 2690 369 306 58 65 chr9 10615581 10615784 -131655660 - L1ME1 LINE L1 -3563 2583 2381 2294 63 0 20 chr9 10615784 10616086 -131655358 - AluY SINE Alu -15 296 1 369 306 58 65 chr9 10616086 10616157 -131655287 - L1ME1 LINE L1 -3765 2381 2311 5290 90 69 5 chr9 10616873 10617638 -131653806 - L1PA6 LINE L1 -5 6149 5336 479 288 64 63 chr9 10618690 10618919 -131652525 + MIR SINE MIR 14 246 -16 450 0 0 0 chr9 10619148 10619198 -131652246 + (CA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr9 10620524 10620548 -131650896 + AT_rich Low_complexity Low_complexity 1 24 0 181 327 106 0 chr9 10621145 10621249 -131650195 + L2 LINE L2 3125 3239 -33 2118 126 0 19 chr9 10622956 10623273 -131648171 - AluSq SINE Alu -2 311 1 257 336 19 10 chr9 10626744 10626848 -131644596 + MIR SINE MIR 49 153 -109 1320 213 48 78 chr9 10626866 10627266 -131644178 + MLT1C LTR MaLR 3 390 0 210 260 182 0 chr9 10627266 10627343 -131644101 + MIR SINE MIR 159 249 -13 349 287 85 37 chr9 10627746 10627910 -131643534 - MIR3 SINE MIR -5 203 32 215 372 74 65 chr9 10629247 10629478 -131641966 + L2 LINE L2 2948 3180 -92 259 250 98 11 chr9 10629820 10629912 -131641532 + MIR SINE MIR 58 157 -105 432 337 28 6 chr9 10630383 10630564 -131640880 + MER5A DNA MER1_type 1 185 -4 31 99 0 0 chr9 10631219 10631320 -131640124 + AT_rich Low_complexity Low_complexity 1 101 0 353 312 80 76 chr9 10631803 10631977 -131639467 - MIR SINE MIR -10 252 75 961 161 33 0 chr9 10631977 10632157 -131639287 + L1MB5 LINE L1 5981 6166 -8 353 312 80 76 chr9 10632157 10632232 -131639212 - MIR SINE MIR -187 75 2 207 0 0 0 chr9 10633563 10633586 -131637858 + (A)n Simple_repeat Simple_repeat 1 23 0 2197 119 0 3 chr9 10634978 10635281 -131636163 - AluSg SINE Alu -8 302 1 393 22 0 0 chr9 10636021 10636067 -131635377 + (CA)n Simple_repeat Simple_repeat 1 46 0 4542 193 48 22 chr9 10636104 10637157 -131634287 + L1MD2 LINE L1 5280 6359 0 21 0 0 0 chr9 10637309 10637330 -131634114 + AT_rich Low_complexity Low_complexity 1 21 0 514 164 55 18 chr9 10637343 10637453 -131633991 - MLT1B LTR MaLR -2 388 275 373 176 54 0 chr9 10637672 10637746 -131633698 - MLT1B-int LTR MaLR -488 883 806 * 1736 226 29 13 chr9 10637742 10638122 -131633322 - MLT1B-int LTR MaLR -703 668 283 438 243 36 9 chr9 10638127 10638238 -131633206 - MLT1B-int LTR MaLR -1256 115 2 1147 214 19 62 chr9 10638239 10638561 -131632883 - MLT1B LTR MaLR 0 390 83 377 184 56 56 chr9 10638594 10638719 -131632725 - L1ME4a LINE L1 -30 6091 5967 21 0 0 0 chr9 10639256 10639277 -131632167 + AT_rich Low_complexity Low_complexity 1 21 0 244 376 78 45 chr9 10639350 10639592 -131631852 + L2 LINE L2 2987 3236 -36 283 325 0 12 chr9 10640145 10640225 -131631219 - MIR SINE MIR -155 107 29 2357 71 0 7 chr9 10641071 10641379 -131630065 - AluY SINE Alu -5 306 1 192 352 111 14 chr9 10641381 10641597 -131629847 - L3b LINE CR1 -224 1359 1123 26 0 0 0 chr9 10642196 10642222 -131629222 + AT_rich Low_complexity Low_complexity 1 26 0 395 181 48 0 chr9 10643680 10643763 -131627681 + MIR SINE MIR 174 260 -2 27 29 0 0 chr9 10643784 10643818 -131627626 + AT_rich Low_complexity Low_complexity 1 34 0 201 268 0 0 chr9 10644518 10644574 -131626870 + A-rich Low_complexity Low_complexity 1 56 0 2476 65 0 3 chr9 10644735 10645045 -131626399 - AluY SINE Alu -2 309 1 5397 57 3 0 chr9 10645062 10645734 -131625710 - L1PA7 LINE L1 -33 6121 5448 2153 161 13 15 chr9 10647418 10647809 -131623635 + MLT1B LTR MaLR 1 390 0 598 291 65 57 chr9 10648159 10648510 -131622934 + L1ME4a LINE L1 5500 5853 -268 293 333 56 9 chr9 10650772 10650880 -131620564 + MIR3 SINE MIR 42 154 -54 2356 59 3 40 chr9 10651081 10651402 -131620042 + AluY SINE Alu 1 309 -2 434 367 56 53 chr9 10651543 10651954 -131619490 + L2 LINE L2 2857 3268 -4 288 77 0 0 chr9 10652738 10652777 -131618667 + (CA)n Simple_repeat Simple_repeat 1 39 0 1556 205 3 10 chr9 10652835 10653137 -131618307 + AluJb SINE Alu 1 300 -12 985 356 26 21 chr9 10653461 10654043 -131617401 + L1PA13 LINE L1 1 585 -6202 4333 163 55 66 chr9 10654230 10655818 -131615626 + L1PA16 LINE L1 4588 6157 -9 3026 221 59 14 chr9 10655793 10656763 -131614681 + L1MC3 LINE L1 5254 7764 -21 * 25 51 0 0 chr9 10656772 10656811 -131614633 + AT_rich Low_complexity Low_complexity 1 39 0 2382 71 3 0 chr9 10657229 10657526 -131613918 - AluY SINE Alu -13 298 1 25 0 0 0 chr9 10659255 10659280 -131612164 + AT_rich Low_complexity Low_complexity 1 25 0 191 168 47 19 chr9 10660197 10660304 -131611140 + (TA)n Simple_repeat Simple_repeat 1 110 0 183 129 0 0 chr9 10660303 10660334 -131611110 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 2130 266 68 13 chr9 10660612 10661327 -131610117 + L1MC4a LINE L1 7052 7806 -2 198 156 22 44 chr9 10661593 10661638 -131609806 - L2 LINE L2 -8 3305 3262 428 88 0 0 chr9 10662048 10662105 -131609339 - L1P1 LINE L1 -524 5631 5575 962 43 0 0 chr9 10662105 10662218 -131609226 + L1PA5 LINE L1 6034 6150 -4 25 97 0 9 chr9 10662262 10662299 -131609145 + AT_rich Low_complexity Low_complexity 1 37 -75 1686 147 31 20 chr9 10662299 10662592 -131608852 + AluSg SINE Alu 1 296 -14 25 97 0 9 chr9 10662592 10662667 -131608777 + AT_rich Low_complexity Low_complexity 37 112 0 2017 122 0 7 chr9 10663203 10663522 -131607922 - AluSx SINE Alu 0 312 1 2407 70 0 3 chr9 10663708 10664020 -131607424 + AluY SINE Alu 1 311 0 2396 66 20 0 chr9 10664955 10665260 -131606184 + AluY SINE Alu 1 311 0 191 246 70 18 chr9 10666236 10666293 -131605151 + L2 LINE L2 3254 3313 0 231 233 0 0 chr9 10668901 10668944 -131602500 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 182 381 103 8 chr9 10669429 10669555 -131601889 - L2 LINE L2 -8 3264 3127 285 244 23 0 chr9 10669579 10669665 -131601779 + L1MC4 LINE L1 6615 6702 -1340 345 377 0 0 chr9 10670067 10670205 -131601239 - MIR SINE MIR -56 206 69 265 302 23 54 chr9 10670254 10670383 -131601061 - L2 LINE L2 -592 2722 2598 2649 268 72 23 chr9 10670418 10671316 -131600128 + MER69 DNA AcHobo 1 942 -1584 446 240 126 29 chr9 10671307 10671553 -131599891 + MER69 DNA AcHobo 2156 2425 -101 * 294 347 36 32 chr9 10671777 10672025 -131599419 - L2 LINE L2 -933 2381 2133 556 232 7 7 chr9 10672240 10672378 -131599066 - L1MA10 LINE L1 -4 6330 6193 198 0 0 0 chr9 10672679 10672701 -131598743 + (T)n Simple_repeat Simple_repeat 1 22 0 39 50 0 0 chr9 10672743 10672803 -131598641 + AT_rich Low_complexity Low_complexity 1 60 0 1946 146 0 7 chr9 10672999 10673307 -131598137 + AluSq SINE Alu 1 306 -7 25 0 0 0 chr9 10673576 10673601 -131597843 + AT_rich Low_complexity Low_complexity 1 25 0 1119 240 94 36 chr9 10673625 10674087 -131597357 - MER39 LTR ERV1 0 707 1 24 0 0 0 chr9 10674561 10674585 -131596859 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 10675473 10675494 -131595950 + AT_rich Low_complexity Low_complexity 1 21 0 850 188 19 0 chr9 10675622 10675782 -131595662 + FRAM SINE Alu 1 159 -17 195 337 208 0 chr9 10676045 10676146 -131595298 + L2 LINE L2 3151 3272 0 21 0 0 0 chr9 10676473 10676494 -131594950 + AT_rich Low_complexity Low_complexity 1 21 0 341 254 35 70 chr9 10678058 10678172 -131593272 + L2 LINE L2 3200 3309 -4 21 36 0 0 chr9 10678854 10678882 -131592562 + AT_rich Low_complexity Low_complexity 1 28 0 233 204 0 0 chr9 10680007 10680051 -131591393 + L2 LINE L2 3262 3305 -8 26 30 0 0 chr9 10680238 10680271 -131591173 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 10680378 10680399 -131591045 + AT_rich Low_complexity Low_complexity 1 21 0 266 272 196 58 chr9 10680528 10680752 -131590692 + MIR SINE MIR 6 260 -2 925 171 48 16 chr9 10681572 10681759 -131589685 + MER50 LTR ERV1 1 193 -541 510 260 73 29 chr9 10681952 10682156 -131589288 + LTR7 LTR ERV1 238 450 0 * 2737 181 39 8 chr9 10682156 10682644 -131588800 + MER50 LTR ERV1 182 685 -49 2901 154 16 8 chr9 10682966 10683473 -131587971 + MER75 DNA T2_type 4 514 0 2429 213 73 63 chr9 10683627 10684220 -131587224 + LTR48 LTR ERV1 1 604 -183 1270 226 3 37 chr9 10684220 10684516 -131586928 - AluJo SINE Alu -26 286 1 2429 213 73 63 chr9 10684516 10684679 -131586765 + LTR48 LTR ERV1 604 764 -23 2195 94 10 0 chr9 10684695 10684993 -131586451 - AluY SINE Alu -9 302 2 353 206 0 0 chr9 10685375 10685438 -131586006 + Tigger2 DNA MER2_type 7 69 -2649 * 1145 160 166 64 chr9 10685427 10685740 -131585704 + Tigger2 DNA MER2_type 2273 2617 -101 * 7621 140 10 99 chr9 10685729 10686394 -131585050 + Tigger1 DNA MER2_type 975 1698 -720 748 181 0 23 chr9 10686394 10686527 -131584917 + AluJo/FLAM SINE Alu 1 130 -172 424 169 0 0 chr9 10686527 10686592 -131584852 + AluSp SINE Alu 134 198 -115 7621 140 10 99 chr9 10686592 10686864 -131584580 + Tigger1 DNA MER2_type 1697 1992 -426 2240 101 0 0 chr9 10686864 10687162 -131584282 + AluY SINE Alu 1 298 -13 7621 140 10 99 chr9 10687162 10687743 -131583701 + Tigger1 DNA MER2_type 1992 2418 0 8434 208 71 41 chr9 10687751 10690237 -131581207 + L1MA9 LINE L1 2125 4684 -1462 1413 142 164 0 chr9 10690241 10690473 -131580971 - AluJb SINE Alu -10 302 33 2332 209 13 20 chr9 10690493 10691038 -131580406 + L1MA9 LINE L1 4682 5222 -924 1431 149 33 78 chr9 10691057 10691392 -131580052 + L1MA9 LINE L1 5865 6184 -128 452 123 14 0 chr9 10691401 10691474 -131579970 - MER41E LTR ERV1 -112 400 327 424 195 16 24 chr9 10691486 10691609 -131579835 + L1MA9 LINE L1 6190 6311 -1 25 99 0 0 chr9 10691925 10692006 -131579438 + AT_rich Low_complexity Low_complexity 1 81 0 24 32 0 0 chr9 10692594 10692625 -131578819 + AT_rich Low_complexity Low_complexity 1 31 0 2163 123 0 0 chr9 10694077 10694377 -131577067 + AluSg SINE Alu 1 300 -10 5119 180 59 6 chr9 10694947 10696726 -131574718 - L1PA16 LINE L1 -6 6160 4280 387 337 76 6 chr9 10697081 10697253 -131574191 - MIR SINE MIR -34 228 45 194 81 27 0 chr9 10697355 10697392 -131574052 + (TA)n Simple_repeat Simple_repeat 2 39 0 2052 133 0 0 chr9 10697569 10697854 -131573590 + AluSc SINE Alu 1 285 -24 360 85 102 0 chr9 10697854 10697972 -131573472 + (TA)n Simple_repeat Simple_repeat 1 130 0 1262 199 86 12 chr9 10698146 10698245 -131573199 + MER46B DNA MER2_type 1 91 -2640 4319 164 20 12 chr9 10698245 10698557 -131572887 + L1MA4 LINE L1 5484 5792 -508 2252 158 62 10 chr9 10698557 10698961 -131572483 - MSTA LTR MaLR -3 425 1 4319 164 20 12 chr9 10698961 10699453 -131571991 + L1MA4 LINE L1 5792 6294 -6 1262 199 86 12 chr9 10699453 10699689 -131571755 + MER46B DNA MER2_type 91 236 0 340 263 79 20 chr9 10700031 10700183 -131571261 + MER113 DNA MER1_type? 276 436 -85 374 301 21 0 chr9 10700344 10700461 -131570983 + MIR SINE MIR 11 130 -78 748 221 17 30 chr9 10700464 10700695 -131570749 - L1MC5 LINE L1 -731 7230 7003 647 197 6 0 chr9 10700746 10700924 -131570520 + GA-rich Low_complexity Low_complexity 2 180 0 572 321 71 64 chr9 10701149 10701731 -131569713 - L1MCa LINE L1 -834 1050 17 230 106 0 85 chr9 10702129 10702160 -131569284 - L1PA4 LINE L1 -1929 4217 4190 9321 42 8 0 chr9 10702160 10704084 -131567360 + L1PA4 LINE L1 4218 6149 -6 230 106 0 85 chr9 10704084 10704099 -131567345 - L1P LINE L1 -1956 4190 4175 187 200 0 0 chr9 10705347 10705382 -131566062 - L2 LINE L2 -4 3268 3234 42 71 0 0 chr9 10705501 10705585 -131565859 + AT_rich Low_complexity Low_complexity 1 84 0 22 70 0 0 chr9 10705608 10705651 -131565793 + AT_rich Low_complexity Low_complexity 1 43 0 386 298 119 70 chr9 10707832 10708262 -131563182 + MLT1L LTR MaLR 1 451 -164 4673 47 6 9 chr9 10708592 10709577 -131561867 - MER11C LTR ERVK 0 1071 1 1050 338 66 33 chr9 10709661 10710329 -131561115 + ERVL LTR ERVL 1949 2638 -3126 1072 350 65 47 chr9 10710891 10711873 -131559571 + ERVL LTR ERVL 3286 4285 -1479 542 268 191 0 chr9 10712015 10712183 -131559261 + MIR SINE MIR 41 240 -22 7494 30 6 5 chr9 10713110 10714532 -131556912 - L1PA3 LINE L1 -3 6152 4730 5080 36 2 0 chr9 10714532 10715148 -131556296 + L1PA3 LINE L1 4131 4747 -1399 1460 154 143 0 chr9 10715366 10715638 -131555806 - AluSx SINE Alu -1 311 1 1445 67 0 0 chr9 10715951 10716131 -131555313 + AluSc SINE Alu 130 309 0 397 324 44 9 chr9 10716633 10716862 -131554582 + MIR SINE MIR 28 262 0 322 346 50 39 chr9 10716897 10717079 -131554365 - MIR3 SINE MIR -6 202 19 216 0 0 0 chr9 10717638 10717662 -131553782 + (T)n Simple_repeat Simple_repeat 1 24 0 803 274 43 10 chr9 10718326 10718534 -131552910 + MER58A DNA MER1_type 1 215 -9 281 294 161 7 chr9 10718770 10718913 -131552531 + MIR SINE MIR 86 250 -12 853 155 37 0 chr9 10719655 10719816 -131551628 + L1MA9 LINE L1 5863 6029 -283 383 121 0 91 chr9 10720372 10720570 -131550874 + (TA)n Simple_repeat Simple_repeat 1 180 0 328 311 192 6 chr9 10723801 10723968 -131547476 - MIR SINE MIR -49 213 16 1436 169 58 38 chr9 10725892 10726236 -131545208 - L1MA8 LINE L1 -4 6287 5937 525 230 109 30 chr9 10726330 10726495 -131544949 + MIR SINE MIR 68 245 -17 885 205 0 0 chr9 10726970 10727121 -131544323 + AluJb SINE Alu 134 284 -28 281 361 71 0 chr9 10728027 10728196 -131543248 - MIR SINE MIR 0 262 82 1218 245 30 18 chr9 10728468 10728803 -131542641 - MER58B DNA MER1_type -1 340 2 2065 119 0 29 chr9 10728879 10729190 -131542254 - AluSc SINE Alu -2 307 6 1427 147 29 21 chr9 10729197 10729476 -131541968 - L1MA6 LINE L1 -2 6298 6018 1378 209 94 115 chr9 10730850 10731785 -131539659 - LTR1B LTR ERV1 -4 1016 1 22 0 0 0 chr9 10732900 10732922 -131538522 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 10732963 10732984 -131538460 + AT_rich Low_complexity Low_complexity 1 21 0 270 285 65 24 chr9 10734015 10734138 -131537306 - MIR3 SINE MIR -5 203 76 246 316 32 11 chr9 10734170 10734265 -131537179 - MIR3 SINE MIR -29 179 83 1584 168 45 45 chr9 10734278 10734652 -131536792 + THE1C LTR MaLR 1 374 -1 333 251 18 105 chr9 10734666 10734837 -131536607 + MER117 DNA MER1_type 41 196 -1 2263 78 3 7 chr9 10736621 10736928 -131534516 - AluSc SINE Alu -3 306 1 330 332 56 39 chr9 10737289 10737521 -131533923 - L1MC/D LINE L1 -2062 5746 5511 229 294 167 49 chr9 10738521 10738766 -131532678 - L2 LINE L2 -676 2638 2365 250 267 35 23 chr9 10738854 10738940 -131532504 + MLT1L LTR MaLR 120 206 -409 2255 101 0 16 chr9 10739362 10739679 -131531765 + AluSx SINE Alu 1 312 0 1672 181 20 0 chr9 10739849 10740148 -131531296 - AluJo SINE Alu -3 309 5 26 64 0 0 chr9 10740237 10740284 -131531160 + AT_rich Low_complexity Low_complexity 1 47 0 2235 159 51 19 chr9 10740568 10740983 -131530461 + MSTC LTR MaLR 1 428 0 21 57 0 0 chr9 10742090 10742125 -131529319 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr9 10743624 10743648 -131527796 + AT_rich Low_complexity Low_complexity 1 24 0 343 348 51 41 chr9 10743800 10744327 -131527117 + HAL1b LINE L1 303 590 -758 620 261 30 53 chr9 10744450 10744714 -131526730 + L1MC5 LINE L1 6976 7233 -728 281 277 61 48 chr9 10744910 10745141 -131526303 + L1MC5 LINE L1 7262 7495 -466 244 311 68 19 chr9 10745415 10745576 -131525868 + L1MC5 LINE L1 7749 7917 -44 397 325 0 26 chr9 10745888 10746116 -131525328 + L1MC4 LINE L1 7693 7914 -128 312 305 16 8 chr9 10747245 10747373 -131524071 - MIR SINE MIR 0 262 134 485 284 40 113 chr9 10747531 10747667 -131523777 + MIR SINE MIR 7 115 -147 1516 162 53 15 chr9 10747667 10747933 -131523511 + AluJo SINE Alu 11 286 -26 485 284 40 113 chr9 10747933 10748071 -131523373 + MIR SINE MIR 115 261 -1 296 207 0 0 chr9 10750671 10750729 -131520715 + AluJ/monomer SINE Alu 241 298 -2 210 176 0 0 chr9 10751372 10751423 -131520021 + GA-rich Low_complexity Low_complexity 3 53 0 2140 112 7 0 chr9 10753032 10753335 -131518109 + AluSp SINE Alu 1 305 -8 192 77 0 0 chr9 10754294 10754320 -131517124 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 654 234 57 29 chr9 10754553 10754762 -131516682 - MER20 DNA MER1_type -1 218 4 1716 114 87 70 chr9 10755320 10755689 -131515755 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr9 10756465 10756498 -131514946 + AT_rich Low_complexity Low_complexity 1 33 0 252 330 199 6 chr9 10756750 10756926 -131514518 + MIR SINE MIR 20 229 -33 322 306 40 24 chr9 10757189 10757313 -131514131 + MLT1H LTR MaLR 229 354 -195 21 0 0 0 chr9 10757818 10757839 -131513605 + AT_rich Low_complexity Low_complexity 1 21 0 1944 189 70 5 chr9 10758094 10758491 -131512953 + MSTB LTR MaLR 1 423 -3 2761 96 5 5 chr9 10759943 10760318 -131511126 + THE1C LTR MaLR 1 375 0 329 311 92 26 chr9 10760319 10760547 -131510897 + MLT1-int LTR MaLR 291 533 -838 830 194 138 6 chr9 10760835 10761198 -131510246 + MLT1D LTR MaLR 59 494 -11 843 293 162 31 chr9 10761873 10762421 -131509023 + MLT1G LTR MaLR 11 590 0 1950 184 45 21 chr9 10763725 10764144 -131507300 + MSTB1 LTR MaLR 4 432 0 2006 146 50 31 chr9 10764324 10764743 -131506701 + L1MA8 LINE L1 5861 6287 -4 877 226 252 87 chr9 10764917 10765128 -131506316 + LTR41 LTR ERVL 1 176 -597 387 41 0 0 chr9 10765128 10765177 -131506267 + (TG)n Simple_repeat Simple_repeat 1 49 0 877 226 252 87 chr9 10765177 10765542 -131505902 + LTR41 LTR ERVL 176 700 -73 1531 175 7 11 chr9 10765542 10765827 -131505617 - AluJo SINE Alu -17 295 12 877 226 252 87 chr9 10765827 10765904 -131505540 + LTR41 LTR ERVL 700 763 -10 1400 311 32 64 chr9 10767407 10768487 -131502957 - L2 LINE L2 0 3313 2198 1288 221 13 7 chr9 10768504 10768802 -131502642 + L1P LINE L1 2022 2321 -3825 199 296 28 0 chr9 10768945 10769016 -131502428 - L2 LINE L2 -1606 1708 1636 1227 246 31 24 chr9 10769169 10769458 -131501986 - AluJb SINE Alu -11 291 1 454 313 87 38 chr9 10769495 10769783 -131501661 + L2 LINE L2 2584 2885 -429 294 330 76 0 chr9 10770051 10770169 -131501275 + L2 LINE L2 3182 3308 -5 701 154 75 58 chr9 10770871 10771059 -131500385 + L1MA8 LINE L1 5938 6128 -163 270 0 0 0 chr9 10772471 10772501 -131498943 + (CA)n Simple_repeat Simple_repeat 2 31 0 822 248 61 5 chr9 10773178 10773376 -131498068 - MER58A DNA MER1_type -6 218 10 219 368 34 8 chr9 10774105 10774222 -131497222 + MER5A DNA MER1_type 6 125 -64 934 221 52 31 chr9 10774267 10774593 -131496851 + L1M4 LINE L1 4178 4510 -1636 * 3576 160 57 8 chr9 10774580 10775361 -131496083 + L1MA8 LINE L1 5180 5993 -298 3041 182 12 21 chr9 10775424 10775981 -131495463 - MSTB-int LTR MaLR -1051 600 48 1962 106 0 0 chr9 10775981 10776236 -131495208 - AluSc SINE Alu -16 293 39 3041 182 12 21 chr9 10776236 10776283 -131495161 - MSTB-int LTR MaLR -1603 48 2 1022 232 19 5 chr9 10776284 10776495 -131494949 - MSTB LTR MaLR 0 426 213 22 0 0 0 chr9 10776827 10776849 -131494595 + AT_rich Low_complexity Low_complexity 1 22 0 38 22 0 0 chr9 10776903 10776948 -131494496 + AT_rich Low_complexity Low_complexity 1 45 0 1395 175 93 11 chr9 10776999 10777268 -131494176 - MSTA LTR MaLR 0 428 138 22 0 0 0 chr9 10777887 10777909 -131493535 + AT_rich Low_complexity Low_complexity 1 22 0 325 269 134 15 chr9 10778712 10778846 -131492598 + MIR SINE MIR 110 259 -3 233 298 36 24 chr9 10778865 10778949 -131492495 + L2 LINE L2 3184 3268 -4 189 261 152 43 chr9 10779898 10779990 -131491454 + MIR SINE MIR 105 206 -56 1644 190 44 36 chr9 10782646 10783031 -131488413 - MLT1B LTR MaLR 0 390 3 537 265 143 31 chr9 10785352 10785575 -131485869 + MIR SINE MIR 15 262 0 22 35 0 0 chr9 10787134 10787163 -131484281 + AT_rich Low_complexity Low_complexity 1 29 0 6790 231 40 34 chr9 10788755 10792029 -131479415 + L1M2c LINE L1 3 2999 -3789 * 8154 200 103 16 chr9 10792006 10794261 -131477183 + L1M2c LINE L1 3208 5658 -1130 23 0 0 0 chr9 10796571 10796594 -131474850 + AT_rich Low_complexity Low_complexity 1 23 0 548 253 203 25 chr9 10797139 10797341 -131474103 - MIR SINE MIR -20 242 5 1006 250 103 32 chr9 10798061 10798449 -131472995 + L1MC4 LINE L1 7502 7936 -106 269 68 23 0 chr9 10798449 10798493 -131472951 + (TG)n Simple_repeat Simple_repeat 2 46 0 1006 250 103 32 chr9 10798493 10798608 -131472836 + L1MC4 LINE L1 7936 8041 -1 310 240 64 8 chr9 10798618 10798743 -131472701 + HAL1 LINE L1 1102 1233 -1274 301 244 61 0 chr9 10799238 10799320 -131472124 + HAL1 LINE L1 1846 1932 -575 507 246 113 35 chr9 10799425 10799681 -131471763 + HAL1 LINE L1 2117 2392 -115 1658 191 3 7 chr9 10801166 10801469 -131469975 - AluJo SINE Alu -10 302 1 279 0 0 0 chr9 10804097 10804128 -131467316 + (CA)n Simple_repeat Simple_repeat 2 32 0 2078 118 0 10 chr9 10804743 10805031 -131466413 - AluSc SINE Alu -24 285 1 180 0 0 0 chr9 10805363 10805383 -131466061 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 21 36 0 0 chr9 10805936 10805964 -131465480 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr9 10806043 10806083 -131465361 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr9 10806303 10806329 -131465115 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr9 10806522 10806551 -131464893 + AT_rich Low_complexity Low_complexity 1 29 0 42078 37 23 2 chr9 10806553 10812577 -131458867 + L1PA3 LINE L1 2 6154 -1 28 0 0 0 chr9 10812577 10812605 -131458839 + AT_rich Low_complexity Low_complexity 1 28 0 25 90 0 0 chr9 10812760 10812827 -131458617 + AT_rich Low_complexity Low_complexity 1 67 0 383 241 9 19 chr9 10815336 10815444 -131456000 - LTR33 LTR ERVL -13 508 402 371 316 78 31 chr9 10815539 10815795 -131455649 - LTR33 LTR ERVL -250 271 4 197 391 120 0 chr9 10815830 10815922 -131455522 + MIR SINE MIR 49 151 -111 268 378 75 70 chr9 10816038 10816307 -131455137 + L2 LINE L2 2869 3142 -130 1346 127 35 35 chr9 10816307 10816535 -131454909 + MER30 DNA MER1_type 3 230 0 268 378 75 70 chr9 10816535 10816667 -131454777 + L2 LINE L2 3142 3272 0 1854 148 7 0 chr9 10816679 10816962 -131454482 - AluSx SINE Alu -27 285 1 887 284 116 34 chr9 10817451 10818148 -131453296 - L1MC4a LINE L1 -1748 6060 5307 180 0 0 0 chr9 10818753 10818773 -131452671 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 496 329 119 35 chr9 10818788 10819098 -131452346 - L2 LINE L2 -33 3280 2945 267 257 9 48 chr9 10819141 10819246 -131452198 + LTR16A LTR ERVL 28 128 -322 543 274 0 0 chr9 10819457 10819581 -131451863 + LTR16A LTR ERVL 267 390 -60 1804 320 123 23 chr9 10819679 10821042 -131450402 - L2 LINE L2 0 3313 1806 326 331 6 6 chr9 10821047 10821204 -131450240 + L1M4 LINE L1 2679 2835 -3311 27 92 0 0 chr9 10821275 10821351 -131450093 + AT_rich Low_complexity Low_complexity 1 76 0 313 367 75 0 chr9 10821516 10821636 -131449808 + L2 LINE L2 3141 3269 -3 678 42 84 6 chr9 10822645 10822811 -131448633 + (TA)n Simple_repeat Simple_repeat 2 180 0 721 41 71 12 chr9 10822822 10822992 -131448452 + (TA)n Simple_repeat Simple_repeat 1 180 0 200 122 0 24 chr9 10825014 10825055 -131446389 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 285 294 57 52 chr9 10825136 10825330 -131446114 + MLT1K LTR MaLR 375 569 -19 2641 23 7 3 chr9 10825782 10826092 -131445352 + AluY SINE Alu 1 311 0 259 333 59 75 chr9 10826970 10827559 -131443885 + ERVL LTR ERVL 841 1420 -4344 897 325 122 31 chr9 10827893 10828469 -131442975 + ERVL LTR ERVL 1801 2428 -3336 608 243 143 11 chr9 10828477 10828666 -131442778 + MLT2D LTR ERVL 4 217 -197 717 166 14 7 chr9 10828667 10828806 -131442638 + L1PB2 LINE L1 6012 6151 0 339 65 0 0 chr9 10828833 10828879 -131442565 + (CA)n Simple_repeat Simple_repeat 2 47 0 2092 127 13 0 chr9 10829354 10829662 -131441782 + AluSx SINE Alu 1 312 0 2348 53 4 0 chr9 10830837 10831161 -131440283 - AluY SINE Alu 0 325 1 21 36 0 0 chr9 10831857 10831885 -131439559 + AT_rich Low_complexity Low_complexity 1 28 0 249 389 13 6 chr9 10832519 10832676 -131438768 + L1MC3 LINE L1 558 715 -5404 337 284 27 34 chr9 10832874 10833022 -131438422 + L1MC3 LINE L1 3596 3742 -2387 * 8386 212 81 36 chr9 10833014 10833587 -131437857 + L1MC3 LINE L1 4607 5152 -2616 2197 100 0 3 chr9 10833587 10833876 -131437568 + AluSq SINE Alu 1 288 -25 8386 212 81 36 chr9 10833876 10836174 -131435270 + L1MC3 LINE L1 5152 7591 -177 1909 67 4 0 chr9 10836144 10836412 -131435032 + L1P LINE L1 5118 5386 -743 * 226 184 20 0 chr9 10836476 10836525 -131434919 + (TA)n Simple_repeat Simple_repeat 1 50 0 297 146 463 0 chr9 10837238 10837320 -131434124 + L1MA6 LINE L1 6173 6293 -4 180 191 0 24 chr9 10837589 10837631 -131433813 - L2 LINE L2 -969 2345 2305 419 103 82 0 chr9 10839363 10839460 -131431984 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 349 321 83 37 chr9 10840995 10841213 -131430231 + MIR SINE MIR 32 259 -3 233 313 53 30 chr9 10842287 10842418 -131429026 - MIR SINE MIR -114 148 15 464 262 119 12 chr9 10842429 10842597 -131428847 + MIR SINE MIR 5 190 -72 476 319 68 16 chr9 10842816 10843007 -131428437 - MIR SINE MIR -10 252 52 199 351 13 46 chr9 10844234 10844385 -131427059 - L2 LINE L2 -10 3303 3158 224 321 57 0 chr9 10844559 10844665 -131426779 - L2 LINE L2 -411 2903 2792 198 295 57 72 chr9 10845350 10845543 -131425901 - L2 LINE L2 -437 2877 2688 2003 39 78 0 chr9 10845543 10845799 -131425645 + AluY SINE Alu 36 311 0 21 0 0 0 chr9 10846266 10846287 -131425157 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 10846756 10846782 -131424662 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr9 10847305 10847344 -131424100 + AT_rich Low_complexity Low_complexity 1 39 0 1968 213 78 23 chr9 10847873 10848347 -131423097 - MLT1D LTR MaLR 0 505 6 1558 185 3 33 chr9 10848520 10848823 -131422621 + AluJo SINE Alu 1 294 -18 221 109 22 0 chr9 10849116 10849162 -131422282 + T-rich Low_complexity Low_complexity 1 47 0 295 320 72 16 chr9 10850047 10850172 -131421272 + L2 LINE L2 3141 3272 0 342 313 167 7 chr9 10850818 10850968 -131420476 + MER5A DNA MER1_type 9 182 -7 368 301 103 20 chr9 10851080 10851226 -131420218 + MIR SINE MIR 25 182 -80 506 281 32 67 chr9 10851367 10851652 -131419792 + Charlie2 DNA MER1_type 6 280 -2502 2080 133 3 3 chr9 10851726 10852026 -131419418 - AluSx SINE Alu -12 300 1 207 0 0 0 chr9 10852029 10852052 -131419392 + (A)n Simple_repeat Simple_repeat 1 23 0 493 185 123 31 chr9 10852206 10852368 -131419076 + Charlie2a DNA MER1_type 1495 1671 -1191 372 284 22 15 chr9 10853289 10853423 -131418021 + L1MCc LINE L1 19 153 -6270 1021 257 84 97 chr9 10853512 10854623 -131416821 + L1MCc LINE L1 1350 2601 -4479 24 85 0 0 chr9 10854818 10854877 -131416567 + AT_rich Low_complexity Low_complexity 1 59 0 281 221 35 122 chr9 10855587 10855666 -131415778 + MER106B DNA MER1_type 903 961 -98 2084 125 3 3 chr9 10855666 10855978 -131415466 + AluSx SINE Alu 1 312 0 281 221 35 122 chr9 10855978 10856070 -131415374 + MER106B DNA MER1_type 961 1059 0 316 264 0 64 chr9 10856078 10856188 -131415256 + L1ME3A LINE L1 5265 5367 -2441 330 354 59 39 chr9 10856257 10856613 -131414831 + L1ME3A LINE L1 5513 5875 -295 2335 69 0 20 chr9 10856694 10856999 -131414445 - AluY SINE Alu -12 299 1 334 248 57 95 chr9 10857121 10857331 -131414113 + L2 LINE L2 3102 3303 -10 360 0 0 0 chr9 10857815 10857855 -131413589 + (TG)n Simple_repeat Simple_repeat 2 41 0 30 0 0 0 chr9 10858082 10858112 -131413332 + AT_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr9 10859429 10859492 -131411952 + AT_rich Low_complexity Low_complexity 1 63 0 366 295 111 53 chr9 10859540 10859784 -131411660 - LTR41 LTR ERVL -6 767 510 407 263 66 7 chr9 10860235 10860372 -131411072 - LTR41 LTR ERVL -588 185 41 23 54 0 0 chr9 10860997 10861034 -131410410 + AT_rich Low_complexity Low_complexity 1 37 0 29 0 0 0 chr9 10861119 10861148 -131410296 + AT_rich Low_complexity Low_complexity 1 29 0 467 280 127 25 chr9 10861429 10861768 -131409676 + L1ME4a LINE L1 5467 5840 -281 280 304 47 12 chr9 10861829 10862000 -131409444 + L1ME4a LINE L1 5944 6120 -1 641 167 80 0 chr9 10862108 10862258 -131409186 + L1MB1 LINE L1 6007 6168 0 1721 124 124 24 chr9 10862635 10862965 -131408479 - THE1B LTR MaLR 0 364 2 261 0 0 0 chr9 10864356 10864385 -131407059 + (A)n Simple_repeat Simple_repeat 1 29 0 1932 208 99 87 chr9 10864518 10865334 -131406110 + LTR1B LTR ERV1 1 826 0 1454 247 100 45 chr9 10865435 10865897 -131405547 + HUERS-P2 LTR ERV1 72 558 -2530 250 237 64 110 chr9 10866229 10866277 -131405167 + L1ME LINE L1 5013 5062 -1084 2151 115 7 0 chr9 10866277 10866573 -131404871 - AluSq SINE Alu -15 298 1 250 237 64 110 chr9 10866573 10866700 -131404744 + L1ME LINE L1 5062 5193 -953 2274 103 3 0 chr9 10866700 10867000 -131404444 - AluSp SINE Alu -12 301 1 250 237 64 110 chr9 10867000 10867169 -131404275 + L1ME LINE L1 5193 5342 -804 333 0 0 0 chr9 10867172 10867209 -131404235 + (CA)n Simple_repeat Simple_repeat 1 37 0 1593 176 126 28 chr9 10867214 10867611 -131403833 + L1MB8 LINE L1 5741 6176 -2 21 36 0 0 chr9 10867624 10867652 -131403792 + AT_rich Low_complexity Low_complexity 1 28 0 4589 77 0 0 chr9 10867693 10868340 -131403104 + L1PA5 LINE L1 5546 6154 0 240 254 136 0 chr9 10868358 10868468 -131402976 + L1ME LINE L1 5523 5647 -523 1567 275 49 45 chr9 10868483 10869151 -131402293 + L1ME3A LINE L1 5499 6169 -1 760 261 94 0 chr9 10869305 10869508 -131401936 - MIR SINE MIR -27 235 14 225 263 136 42 chr9 10869743 10869861 -131401583 + L2 LINE L2 3173 3301 -12 273 224 90 0 chr9 10870821 10870888 -131400556 + LTR33 LTR ERVL 1 73 -448 291 232 30 71 chr9 10871224 10871323 -131400121 - L3 LINE CR1 -113 1464 1370 3231 228 27 28 chr9 10871729 10872622 -131398822 + L1M4 LINE L1 530 1421 -5121 2203 102 3 13 chr9 10872625 10872928 -131398516 - AluSp SINE Alu -13 300 1 2127 187 28 37 chr9 10872946 10873405 -131398039 + LTR9B LTR ERV1 7 461 -183 476 17 0 0 chr9 10873408 10873468 -131397976 + L1PA6 LINE L1 6095 6154 0 21 0 0 0 chr9 10873468 10873489 -131397955 + AT_rich Low_complexity Low_complexity 1 21 0 2574 105 25 0 chr9 10873496 10873858 -131397586 + HUERS-P3 LTR ERV1 2883 3253 -5666 675 227 7 47 chr9 10873861 10874011 -131397433 + HUERS-P3 LTR ERV1 4539 4682 -4237 2577 136 42 10 chr9 10874014 10874419 -131397025 + HUERS-P3 LTR ERV1 4903 5320 -3599 * 3491 197 38 39 chr9 10874406 10875153 -131396291 + HUERS-P3 LTR ERV1 6214 6959 -1960 879 143 22 18 chr9 10875171 10875398 -131396046 + HUERS-P3 LTR ERV1 2383 4320 -560 1355 169 2 12 chr9 10875671 10875925 -131395519 + HUERS-P3 LTR ERV1 7176 8918 0 2998 165 63 31 chr9 10875925 10876543 -131394901 + LTR9B LTR ERV1 7 644 0 1664 269 44 55 chr9 10876547 10877665 -131393779 + L1M4 LINE L1 1422 2648 -3996 195 69 0 0 chr9 10877665 10877694 -131393750 + (TA)n Simple_repeat Simple_repeat 2 30 0 1664 269 44 55 chr9 10877694 10878408 -131393036 + L1M4 LINE L1 2648 3368 -3276 368 272 24 16 chr9 10879030 10879155 -131392289 - MIR SINE MIR 0 262 137 25 31 0 0 chr9 10879716 10879748 -131391696 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr9 10879896 10879928 -131391516 + AT_rich Low_complexity Low_complexity 1 32 0 209 33 33 0 chr9 10879964 10879994 -131391450 + (CA)n Simple_repeat Simple_repeat 2 32 0 336 284 101 39 chr9 10881032 10881370 -131390074 + L1ME4a LINE L1 5555 5913 -208 313 364 43 48 chr9 10881993 10882224 -131389220 - L3 LINE CR1 -995 582 353 242 368 69 7 chr9 10882382 10882526 -131388918 - MIR SINE MIR -74 188 36 26 0 0 0 chr9 10883085 10883111 -131388333 + AT_rich Low_complexity Low_complexity 1 26 0 2040 255 68 20 chr9 10883434 10884123 -131387321 + MER72 LTR ERV1 1 722 0 26 30 0 0 chr9 10884249 10884282 -131387162 + AT_rich Low_complexity Low_complexity 1 33 0 3905 170 36 10 chr9 10884535 10885264 -131386180 - MER4D LTR ERV1 0 903 156 330 257 0 50 chr9 10886606 10886707 -131384737 - MIR SINE MIR -111 151 56 225 291 0 0 chr9 10888059 10888114 -131383330 + GA-rich Low_complexity Low_complexity 3 57 0 319 20 20 20 chr9 10888717 10888766 -131382678 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2464 4 0 7 chr9 10888871 10889148 -131382296 - AluYa5 SINE Alu -36 275 1 7422 32 1 1 chr9 10889216 10890236 -131381208 + L1PA4 LINE L1 5131 6150 -5 185 284 37 62 chr9 10890238 10890319 -131381125 + MIR SINE MIR 152 230 -32 21 0 0 0 chr9 10890409 10890430 -131381014 + AT_rich Low_complexity Low_complexity 1 21 0 1731 105 8 4 chr9 10890596 10890843 -131380601 - AluSc SINE Alu -4 305 58 226 291 115 61 chr9 10891319 10891484 -131379960 + MLT1L LTR MaLR 369 542 -73 201 189 0 0 chr9 10891572 10891609 -131379835 + L2 LINE L2 3272 3308 -5 394 60 0 0 chr9 10891668 10891718 -131379726 - MADE1 DNA Mariner 0 80 31 22 0 0 0 chr9 10892209 10892231 -131379213 + AT_rich Low_complexity Low_complexity 1 22 0 7710 19 0 0 chr9 10893813 10894962 -131376482 - L1PA4 LINE L1 -8 6147 4999 1139 297 15 10 chr9 10894962 10895370 -131376074 - L1 LINE L1 -3335 2811 2402 28 48 0 0 chr9 10897611 10897653 -131373791 + AT_rich Low_complexity Low_complexity 1 42 0 1905 147 77 18 chr9 10897928 10898268 -131373176 + THE1B LTR MaLR 3 362 -2 11018 94 40 0 chr9 10898270 10899790 -131371654 + THE1B-int LTR MaLR 1 1580 0 1926 130 78 26 chr9 10899791 10900136 -131371308 + THE1B LTR MaLR 2 364 0 263 340 137 26 chr9 10900175 10900554 -131370890 - L2 LINE L2 -826 2488 2068 2534 81 74 15 chr9 10901183 10901555 -131369889 + MLT2A1 LTR ERVL 6 355 -89 387 0 0 0 chr9 10901555 10901598 -131369846 + (TA)n Simple_repeat Simple_repeat 1 43 0 348 24 0 0 chr9 10901597 10901638 -131369806 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 2534 81 74 15 chr9 10901598 10901659 -131369785 + MLT2A1 LTR ERVL 355 422 -22 366 307 92 31 chr9 10901709 10901872 -131369572 + L3 LINE CR1 375 547 -1030 723 161 0 0 chr9 10902399 10902529 -131368915 + L1 LINE L1 4529 4658 -1488 5473 94 47 5 chr9 10902797 10903970 -131367474 - L1PA13 LINE L1 0 6163 4999 25 0 0 0 chr9 10904532 10904557 -131366887 + AT_rich Low_complexity Low_complexity 1 25 0 390 74 0 0 chr9 10904868 10904922 -131366522 + (CA)n Simple_repeat Simple_repeat 1 54 0 2047 97 4 0 chr9 10904955 10905257 -131366187 - AluSc SINE Alu 0 315 13 1466 196 3 25 chr9 10905259 10905544 -131365900 - AluJb SINE Alu -11 301 23 1822 182 100 5 chr9 10905582 10905961 -131365483 + MSTA LTR MaLR 2 416 -12 304 344 114 31 chr9 10906369 10906721 -131364723 + L2 LINE L2 1869 2249 -1065 582 291 98 0 chr9 10906837 10907040 -131364404 - MIR SINE MIR 0 262 40 216 252 54 117 chr9 10907990 10908101 -131363343 + MIR3 SINE MIR 74 177 -31 262 370 68 25 chr9 10911338 10911500 -131359944 + MIR3 SINE MIR 19 187 -21 455 335 24 0 chr9 10912953 10913117 -131358327 - MIR SINE MIR -46 216 49 23 0 0 0 chr9 10913614 10913637 -131357807 + AT_rich Low_complexity Low_complexity 1 23 0 266 298 19 39 chr9 10915571 10915675 -131355769 + MIR SINE MIR 48 149 -113 357 62 0 0 chr9 10915686 10915734 -131355710 + (TG)n Simple_repeat Simple_repeat 1 48 0 276 333 67 22 chr9 10916127 10916262 -131355182 + MIR SINE MIR 79 219 -43 248 271 0 0 chr9 10917562 10917621 -131353823 - MIR3 SINE MIR -12 196 138 335 77 0 19 chr9 10917773 10917825 -131353619 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr9 10918086 10918114 -131353330 + AT_rich Low_complexity Low_complexity 1 28 0 342 323 90 18 chr9 10918313 10918480 -131352964 + L2 LINE L2 3130 3308 -5 2266 97 3 6 chr9 10918652 10918963 -131352481 + AluSg SINE Alu 1 310 0 1999 33 0 0 chr9 10919826 10920068 -131351376 - L1PA4 LINE L1 -3 6152 5911 1354 170 5 0 chr9 10920319 10920542 -131350902 - AluJb SINE Alu -13 299 76 401 252 191 62 chr9 10920878 10921088 -131350356 - MIR SINE MIR -6 256 20 22 35 0 0 chr9 10921304 10921333 -131350111 + AT_rich Low_complexity Low_complexity 1 29 0 1908 145 7 0 chr9 10922142 10922431 -131349013 - AluSx SINE Alu -20 292 2 1908 200 130 19 chr9 10922783 10923203 -131348241 + MER67D LTR ERV1 3 480 -34 1434 214 26 45 chr9 10923203 10923356 -131348088 + MLT1A2 LTR MaLR 4 158 -216 204 40 0 0 chr9 10923356 10923381 -131348063 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 1434 214 26 45 chr9 10923381 10923605 -131347839 + MLT1A2 LTR MaLR 158 374 0 1908 200 130 19 chr9 10923605 10923645 -131347799 + MER67D LTR ERV1 480 514 0 644 325 42 17 chr9 10923715 10923955 -131347489 - MIR SINE MIR -4 258 13 249 174 61 0 chr9 10924172 10924270 -131347174 + (TA)n Simple_repeat Simple_repeat 1 104 0 2094 133 0 0 chr9 10924414 10924708 -131346736 + AluSg SINE Alu 1 294 -16 231 385 56 7 chr9 10925396 10925539 -131345905 + MIR3 SINE MIR 3 152 -56 358 264 62 0 chr9 10925644 10925788 -131345656 - LTR33A LTR ERVL -2 521 369 1939 121 10 3 chr9 10925948 10926245 -131345199 + AluSg SINE Alu 12 310 0 1457 188 84 10 chr9 10926569 10926925 -131344519 + LTR56 LTR ERV1 86 467 0 23 0 0 0 chr9 10927362 10927385 -131344059 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr9 10928135 10928168 -131343276 + AT_rich Low_complexity Low_complexity 1 33 0 1216 92 8 8 chr9 10929150 10929399 -131342045 + (TTTC)n Simple_repeat Simple_repeat 1 249 0 849 221 16 21 chr9 10930215 10930405 -131341039 + MER5A DNA MER1_type 1 189 0 688 215 116 45 chr9 10930417 10930696 -131340748 - LTR37A LTR ERV1 0 426 121 2044 142 0 3 chr9 10930696 10931007 -131340437 + AluSq SINE Alu 1 310 -3 688 215 116 45 chr9 10931007 10931038 -131340406 - LTR37A LTR ERV1 -305 121 94 180 380 28 19 chr9 10931832 10931940 -131339504 + MIR SINE MIR 42 150 -58 194 0 0 37 chr9 10932202 10932229 -131339215 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 525 198 0 19 chr9 10933087 10933193 -131338251 + L1PA16 LINE L1 6054 6157 -9 21 0 0 0 chr9 10933193 10933214 -131338230 + AT_rich Low_complexity Low_complexity 1 21 0 477 0 0 0 chr9 10933515 10933568 -131337876 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 27 0 0 0 chr9 10934788 10934815 -131336629 + AT_rich Low_complexity Low_complexity 1 27 0 186 259 19 0 chr9 10935813 10935867 -131335577 - MIR SINE MIR -104 158 104 390 228 96 101 chr9 10935913 10936132 -131335312 - MIR SINE MIR -42 220 3 828 223 88 0 chr9 10936175 10936368 -131335076 + MER63A DNA MER1_type 1 210 0 184 298 20 126 chr9 10936540 10936691 -131334753 + MIR3 SINE MIR 10 144 -64 23 68 0 0 chr9 10938222 10938266 -131333178 + AT_rich Low_complexity Low_complexity 1 44 0 180 329 14 0 chr9 10938359 10938432 -131333012 - MER5A DNA MER1_type -45 144 71 2393 246 35 35 chr9 10939257 10940122 -131331322 + L1MC3 LINE L1 4246 5110 -1036 24 53 0 0 chr9 10940282 10940320 -131331124 + AT_rich Low_complexity Low_complexity 1 38 0 607 220 181 6 chr9 10940375 10940669 -131330775 + L1MC3 LINE L1 5125 5487 -838 180 0 0 0 chr9 10940669 10940689 -131330755 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 607 220 181 6 chr9 10940689 10940722 -131330722 + L1MC3 LINE L1 5487 5513 -812 646 160 0 0 chr9 10940722 10940822 -131330622 - LTR12 LTR ERV1 0 714 615 300 273 10 0 chr9 10940824 10940923 -131330521 - LTR30 LTR ERV1 -79 643 544 687 155 38 113 chr9 10940923 10941136 -131330308 - LTR12 LTR ERV1 -437 277 81 1802 183 158 7 chr9 10941136 10941584 -131329860 + L1MC3 LINE L1 5564 6079 -1706 949 192 20 15 chr9 10941590 10941788 -131329656 + L1MC3 LINE L1 6169 6367 -1418 620 189 45 0 chr9 10941787 10941919 -131329525 + L1MC3 LINE L1 7481 7618 -167 * 37 62 0 0 chr9 10943828 10943893 -131327551 + AT_rich Low_complexity Low_complexity 1 65 0 422 235 10 10 chr9 10943922 10944020 -131327424 + L2 LINE L2 3216 3313 0 242 351 45 22 chr9 10945714 10945848 -131325596 + MER5A DNA MER1_type 7 143 -46 2230 118 21 3 chr9 10945870 10946210 -131325234 - L1PA15 LINE L1 -6 6159 5814 469 283 135 80 chr9 10946566 10946604 -131324840 - L3 LINE CR1 -3 1574 1540 2111 127 0 16 chr9 10946604 10946919 -131324525 + AluSg SINE Alu 1 310 0 469 283 135 80 chr9 10946919 10947332 -131324112 - L3 LINE CR1 -37 1540 1098 1500 203 58 29 chr9 10949729 10950086 -131321358 + MLT1A1 LTR MaLR 6 428 0 435 19 0 0 chr9 10951186 10951238 -131320206 + (CA)n Simple_repeat Simple_repeat 2 53 0 1403 185 129 16 chr9 10952031 10952334 -131319110 - MER1B DNA MER1_type 0 337 1 248 314 26 103 chr9 10952343 10952499 -131318945 + MIR SINE MIR 48 191 -71 553 312 83 5 chr9 10953002 10953207 -131318237 - MER58A DNA MER1_type -2 222 2 185 156 0 22 chr9 10954042 10954087 -131317357 + (CA)n Simple_repeat Simple_repeat 1 44 0 245 363 41 29 chr9 10957026 10957197 -131314247 + MIR SINE MIR 86 258 -4 399 196 83 43 chr9 10957198 10957335 -131314109 + L1MB7 LINE L1 6018 6137 -43 1021 233 16 12 chr9 10957335 10957613 -131313831 + AluJo SINE Alu 38 316 0 395 214 111 8 chr9 10959084 10959210 -131312234 + MER104 DNA Tc2 5 143 -37 369 0 0 0 chr9 10959293 10959334 -131312110 + (CA)n Simple_repeat Simple_repeat 2 42 0 4999 187 26 7 chr9 10960934 10962492 -131308952 + L1PA16 LINE L1 4591 6175 0 21 0 0 0 chr9 10962577 10962598 -131308846 + AT_rich Low_complexity Low_complexity 1 21 0 252 86 0 0 chr9 10962894 10962929 -131308515 + (T)n Simple_repeat Simple_repeat 1 35 0 11431 34 2 0 chr9 10964738 10966247 -131305197 - L1PA4 LINE L1 -624 5531 4018 5286 38 0 0 chr9 10966247 10966900 -131304544 + L1PA4 LINE L1 5519 6175 0 220 312 97 32 chr9 10967117 10967210 -131304234 - MIR SINE MIR -111 151 53 684 251 25 25 chr9 10967544 10967743 -131303701 + MIR SINE MIR 2 200 -62 281 189 19 0 chr9 10967744 10967797 -131303647 + L1PA16 LINE L1 5858 5911 -255 227 250 22 22 chr9 10968305 10968397 -131303047 - MER103 DNA DNA -63 103 12 422 293 183 11 chr9 10968596 10968787 -131302657 - MIR SINE MIR -20 242 19 316 346 63 0 chr9 10969074 10969233 -131302211 - MIR SINE MIR 0 262 94 26 0 0 0 chr9 10969374 10969400 -131302044 + AT_rich Low_complexity Low_complexity 1 26 0 26 64 0 0 chr9 10970903 10970950 -131300494 + AT_rich Low_complexity Low_complexity 1 47 0 29 0 0 0 chr9 10971747 10971776 -131299668 + AT_rich Low_complexity Low_complexity 1 29 0 2981 117 6 26 chr9 10972232 10972730 -131298714 + L1MB3 LINE L1 5696 6183 0 275 326 11 21 chr9 10973868 10973963 -131297481 + MIR3 SINE MIR 101 194 -14 319 192 164 14 chr9 10974258 10974331 -131297113 - MLT1I LTR MaLR -245 164 81 216 0 0 0 chr9 10974387 10974411 -131297033 + (A)n Simple_repeat Simple_repeat 1 24 0 435 311 90 6 chr9 10975855 10976032 -131295412 + MIR SINE MIR 65 256 -6 229 309 82 0 chr9 10976015 10976125 -131295319 + L2 LINE L2 3187 3305 -8 * 253 313 20 27 chr9 10976311 10976461 -131294983 + MLT1I LTR MaLR 1 149 -260 1864 171 13 19 chr9 10976556 10976931 -131294513 - L1MA8 LINE L1 -3 6288 5916 1717 155 19 7 chr9 10976932 10977241 -131294203 + L1MA8 LINE L1 5588 5900 -391 223 347 96 30 chr9 10978596 10978763 -131292681 - MIR SINE MIR -15 247 70 238 328 67 22 chr9 10979396 10979530 -131291914 + MIR SINE MIR 63 202 -60 2806 13 0 0 chr9 10979600 10979911 -131291533 - AluYa5 SINE Alu 0 311 1 529 275 28 3 chr9 10981578 10981789 -131289655 - MIR SINE MIR -37 225 9 306 289 52 39 chr9 10981894 10982065 -131289379 + MER5A DNA MER1_type 4 187 -2 408 241 15 3 chr9 10982098 10982233 -131289211 - MER5A DNA MER1_type 0 189 10 283 289 87 71 chr9 10982296 10982463 -131288981 - MER5A DNA MER1_type -11 167 12 189 132 0 0 chr9 10982845 10982883 -131288561 + (TC)n Simple_repeat Simple_repeat 2 39 0 257 244 12 0 chr9 10982913 10982999 -131288445 + (TA)n Simple_repeat Simple_repeat 2 88 0 829 226 122 19 chr9 10984735 10985054 -131286390 + Charlie4a DNA MER1_type 119 508 0 653 282 235 19 chr9 10985058 10985556 -131285888 + L2 LINE L2 2703 3313 0 1092 226 147 48 chr9 10985728 10986144 -131285300 - MLT1C LTR MaLR 0 467 11 342 0 0 0 chr9 10986570 10986608 -131284836 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 254 229 31 0 chr9 10986624 10986720 -131284724 + (TA)n Simple_repeat Simple_repeat 2 100 0 204 371 9 26 chr9 10986777 10986893 -131284551 + MIR SINE MIR 149 262 0 671 334 127 30 chr9 10986915 10987241 -131284203 + L3 LINE CR1 810 1103 -474 306 0 0 0 chr9 10987241 10987275 -131284169 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 671 334 127 30 chr9 10987275 10987523 -131283921 + L3 LINE CR1 1103 1440 -137 197 293 130 32 chr9 10987532 10987655 -131283789 - MIR SINE MIR -4 258 124 1235 191 62 57 chr9 10987883 10988306 -131283138 - LTR37A LTR ERV1 0 426 2 407 273 22 14 chr9 10988691 10988830 -131282614 - MIR SINE MIR -50 212 73 26 74 0 0 chr9 10989025 10989079 -131282365 + AT_rich Low_complexity Low_complexity 1 54 0 25 65 0 0 chr9 10989341 10989387 -131282057 + AT_rich Low_complexity Low_complexity 1 46 0 2200 110 0 0 chr9 10990399 10990689 -131280755 + AluSx SINE Alu 1 290 -22 2139 92 16 13 chr9 10993761 10993996 -131277448 - AluSg SINE Alu 0 310 123 315 0 0 0 chr9 10993996 10994031 -131277413 + (TG)n Simple_repeat Simple_repeat 2 36 0 2139 92 16 13 chr9 10994031 10994151 -131277293 - AluSg SINE Alu -187 123 5 333 0 0 0 chr9 10994800 10994837 -131276607 + (CA)n Simple_repeat Simple_repeat 2 38 0 1116 258 82 55 chr9 10995049 10995596 -131275848 + MER68 LTR ERV1 1 562 0 2436 172 29 2 chr9 10996567 10997020 -131274424 + MLT1C LTR MaLR 1 465 -2 24 0 0 0 chr9 10997230 10997254 -131274190 + AT_rich Low_complexity Low_complexity 1 24 0 180 338 56 28 chr9 10997714 10997927 -131273517 + L2 LINE L2 1880 2098 -1216 21 36 0 0 chr9 10998184 10998212 -131273232 + AT_rich Low_complexity Low_complexity 1 28 0 210 340 111 14 chr9 10999676 10999820 -131271624 + MIR SINE MIR 105 262 0 898 247 85 62 chr9 11001197 11001508 -131269936 + MLT1F LTR MaLR 3 328 -239 4534 268 13 22 chr9 11002792 11004931 -131266513 + L1PA16 LINE L1 2182 4249 -3335 7994 11 0 0 chr9 11004931 11006088 -131265356 + L1HS LINE L1 4999 6155 0 8408 213 26 28 chr9 11006094 11006790 -131264654 + L1PA16 LINE L1 4252 4948 -2656 230 0 33 0 chr9 11006790 11006820 -131264624 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8408 213 26 28 chr9 11006820 11008703 -131262741 + L1PA16 LINE L1 4948 6823 -781 17718 31 1 0 chr9 11008703 11011661 -131259783 + L1PA3 LINE L1 3220 6155 0 8408 213 26 28 chr9 11011661 11012436 -131259008 + L1PA16 LINE L1 6823 7598 -6 23 33 0 0 chr9 11012471 11012501 -131258943 + AT_rich Low_complexity Low_complexity 1 30 0 270 293 0 57 chr9 11012599 11012705 -131258739 + MLT1F1 LTR MaLR 1 100 -467 22 0 0 0 chr9 11012705 11012727 -131258717 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr9 11013419 11013443 -131258001 + AT_rich Low_complexity Low_complexity 1 24 0 260 171 0 0 chr9 11013655 11013696 -131257748 - MER8 DNA MER2_type -2 237 197 * 2325 156 10 5 chr9 11013692 11014076 -131257368 + Tigger2 DNA MER2_type 2328 2713 -5 195 42 0 0 chr9 11014524 11014548 -131256896 + (TA)n Simple_repeat Simple_repeat 2 25 0 364 129 0 24 chr9 11014564 11014649 -131256795 + (CATA)n Simple_repeat Simple_repeat 2 84 0 465 256 51 51 chr9 11014650 11014826 -131256618 - L2 LINE L2 -4 3309 3134 676 45 0 0 chr9 11015638 11015727 -131255717 - L1PA2 LINE L1 -1 6154 6066 767 11 0 0 chr9 11015727 11015814 -131255630 + L1P1 LINE L1 5650 5736 -419 2043 133 3 0 chr9 11015971 11016265 -131255179 + AluSq SINE Alu 1 295 -18 276 290 130 23 chr9 11016686 11016817 -131254627 - L2 LINE L2 -2 3311 3167 703 241 24 0 chr9 11017052 11017218 -131254226 + MER5B DNA MER1_type 8 177 -1 191 418 11 0 chr9 11017974 11018065 -131253379 + MIR SINE MIR 7 98 -164 2258 112 0 0 chr9 11018097 11018402 -131253042 - AluSg SINE Alu -5 305 1 22 0 0 0 chr9 11018408 11018430 -131253014 + AT_rich Low_complexity Low_complexity 1 22 0 358 314 44 25 chr9 11018449 11018608 -131252836 + L1ME LINE L1 5611 5772 -349 3205 81 5 0 chr9 11018608 11019042 -131252402 + L1PA5 LINE L1 5716 6151 -3 200 135 0 96 chr9 11019045 11019097 -131252347 + (A)n Simple_repeat Simple_repeat 1 47 0 1287 120 0 6 chr9 11019433 11019616 -131251828 - AluSc SINE Alu -11 298 117 2333 83 3 3 chr9 11019630 11019930 -131251514 - AluSg SINE Alu -6 304 5 1891 237 147 20 chr9 11019945 11020862 -131250582 - L1ME1 LINE L1 0 6166 5170 333 140 0 0 chr9 11020859 11020916 -131250528 + L1MA7 LINE L1 5773 5829 -483 * 2188 80 7 0 chr9 11020917 11021193 -131250251 + AluSp SINE Alu 1 278 -35 2365 150 32 13 chr9 11021209 11021676 -131249768 + L1MA7 LINE L1 5815 6290 -1 392 250 100 5 chr9 11021683 11021883 -131249561 - L1ME1 LINE L1 -954 5192 4974 14380 197 92 11 chr9 11021923 11024448 -131246996 - L1PA13 LINE L1 -14 6791 4474 417 20 0 0 chr9 11024448 11024498 -131246946 + (TG)n Simple_repeat Simple_repeat 1 50 0 14380 197 92 11 chr9 11024498 11026377 -131245067 - L1PA13 LINE L1 -2331 4474 2750 207 0 0 0 chr9 11026377 11026400 -131245044 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1766 147 4 7 chr9 11026402 11026681 -131244763 - AluSg SINE Alu -32 278 1 14380 197 92 11 chr9 11026681 11026741 -131244703 - L1PA13 LINE L1 -4055 2750 1874 357 328 8 0 chr9 11026742 11026867 -131244577 - L1ME1 LINE L1 -2299 3847 3722 * 3553 236 9 9 chr9 11026862 11027599 -131243845 + L1M4b LINE L1 6 742 -4586 242 100 40 0 chr9 11027599 11027649 -131243795 + L1MA4 LINE L1 707 758 -4570 2388 186 52 14 chr9 11027736 11028387 -131243057 + L1MA4 LINE L1 732 1398 -4065 888 216 0 10 chr9 11028385 11028589 -131242855 + L1MA4 LINE L1 2340 2541 -3787 * 1190 177 33 4 chr9 11028581 11028824 -131242620 + L1MA4 LINE L1 3524 3773 -2555 5630 190 28 10 chr9 11028829 11030974 -131240470 + L1MA4 LINE L1 4049 6231 -251 279 215 0 0 chr9 11030975 11031040 -131240404 + (TA)n Simple_repeat Simple_repeat 1 65 0 225 143 0 0 chr9 11031040 11031082 -131240362 - LTR66 LTR ERVL -171 439 398 384 103 0 0 chr9 11031083 11031141 -131240303 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 226 173 19 0 chr9 11031351 11031403 -131240041 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 23 0 0 0 chr9 11031476 11031499 -131239945 + AT_rich Low_complexity Low_complexity 1 23 0 208 278 37 0 chr9 11034256 11034364 -131237080 + (TA)n Simple_repeat Simple_repeat 2 113 0 231 206 40 8 chr9 11034377 11034503 -131236941 + (TA)n Simple_repeat Simple_repeat 1 130 0 2575 36 0 0 chr9 11037566 11037867 -131233577 + AluY SINE Alu 1 301 -10 593 274 43 43 chr9 11038153 11038387 -131233057 + L1M4b LINE L1 719 952 -5278 2259 72 14 0 chr9 11038783 11039074 -131232370 + AluY SINE Alu 1 295 -16 226 247 14 55 chr9 11039360 11039433 -131232011 + L2 LINE L2 3235 3304 -9 1558 140 73 62 chr9 11039575 11039894 -131231550 + THE1B LTR MaLR 1 326 -38 2357 70 3 0 chr9 11039894 11040196 -131231248 - AluY SINE Alu -8 303 1 1558 140 73 62 chr9 11040196 11040234 -131231210 + THE1B LTR MaLR 326 362 -2 27 49 0 0 chr9 11040759 11040800 -131230644 + AT_rich Low_complexity Low_complexity 1 41 0 303 282 39 19 chr9 11041711 11041814 -131229630 - MIR SINE MIR -102 160 56 2001 180 64 10 chr9 11042527 11042932 -131228512 + MSTB1 LTR MaLR 1 427 -5 264 323 91 38 chr9 11043556 11043742 -131227702 + MIR SINE MIR 67 262 0 22 0 0 0 chr9 11044609 11044631 -131226813 + AT_rich Low_complexity Low_complexity 1 22 0 370 370 36 51 chr9 11045691 11046080 -131225364 - L2 LINE L2 -436 2878 2496 1005 184 53 0 chr9 11047049 11047255 -131224189 - MER20 DNA MER1_type 0 219 3 340 374 63 35 chr9 11047474 11047792 -131223652 + HAL1 LINE L1 1444 1770 -737 514 282 159 9 chr9 11047975 11048195 -131223249 - MIR SINE MIR -1 261 9 409 250 32 32 chr9 11048675 11048799 -131222645 + L2 LINE L2 2765 2888 -426 729 294 68 39 chr9 11048843 11049536 -131221908 + L1 LINE L1 3529 4241 -1905 388 310 73 67 chr9 11049587 11050036 -131221408 + L1 LINE L1 4326 4777 -1369 261 231 96 29 chr9 11050106 11050210 -131221234 + L1 LINE L1 4904 5014 -1132 234 0 0 0 chr9 11050316 11050342 -131221102 + (A)n Simple_repeat Simple_repeat 1 26 0 2036 133 3 19 chr9 11050347 11050663 -131220781 + AluY SINE Alu 1 311 0 254 222 12 37 chr9 11050856 11050937 -131220507 - MIR SINE MIR -1 261 183 338 324 58 24 chr9 11050972 11051264 -131220180 + L1ME LINE L1 5366 5667 -497 247 268 74 121 chr9 11051296 11051527 -131219917 + MIR SINE MIR 26 245 -17 1903 136 7 0 chr9 11052516 11052828 -131218616 + AluSx SINE Alu 1 314 0 304 220 17 0 chr9 11052889 11052948 -131218496 + L2 LINE L2 3201 3260 -12 184 344 0 0 chr9 11053166 11053230 -131218214 + MIR SINE MIR 178 241 -21 24 0 0 0 chr9 11053444 11053468 -131217976 + AT_rich Low_complexity Low_complexity 1 24 0 541 308 85 27 chr9 11053809 11054033 -131217411 - MIR SINE MIR -6 256 20 338 87 0 0 chr9 11055835 11055881 -131215563 + LTR42 LTR ERVL 363 408 -87 208 351 88 40 chr9 11056154 11056302 -131215142 + L2 LINE L2 2585 2739 -575 22 0 0 0 chr9 11056701 11056723 -131214721 + AT_rich Low_complexity Low_complexity 1 22 0 287 260 144 0 chr9 11057202 11057306 -131214138 - MLT1H LTR MaLR 0 549 431 305 258 21 32 chr9 11057362 11057455 -131213989 + LTR42 LTR ERVL 1 92 -403 1149 176 10 10 chr9 11057464 11057669 -131213775 + LTR42 LTR ERVL 291 495 0 580 287 111 42 chr9 11057690 11057979 -131213465 - MLT1H LTR MaLR -228 321 13 183 363 72 85 chr9 11057993 11058381 -131213063 - L2 LINE L2 -78 3194 2812 1886 103 18 70 chr9 11058458 11058787 -131212657 + AluSx SINE Alu 1 312 0 2252 123 0 0 chr9 11058809 11059117 -131212327 + AluSq SINE Alu 1 308 -5 207 0 0 0 chr9 11059438 11059461 -131211983 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 11059592 11059613 -131211831 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr9 11059651 11059686 -131211758 + AT_rich Low_complexity Low_complexity 1 35 0 715 203 14 7 chr9 11060668 11060816 -131210628 - MLT1D LTR MaLR 0 505 357 225 0 0 0 chr9 11060819 11060844 -131210600 + (A)n Simple_repeat Simple_repeat 1 25 0 271 391 96 10 chr9 11061245 11061442 -131210002 - L3b LINE CR1 -69 1514 1301 22 0 0 0 chr9 11062230 11062252 -131209192 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr9 11062691 11062720 -131208724 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 486 0 0 0 chr9 11062719 11062773 -131208671 + (GA)n Simple_repeat Simple_repeat 2 55 0 206 276 35 0 chr9 11062843 11062901 -131208543 - MIR SINE MIR -123 139 80 206 289 82 41 chr9 11063149 11063246 -131208198 - MIR SINE MIR -1 261 161 1333 107 39 73 chr9 11063315 11063548 -131207896 - AluSq SINE Alu -13 300 76 292 233 0 0 chr9 11063615 11063675 -131207769 + MIR SINE MIR 103 162 -100 570 246 59 21 chr9 11063681 11063868 -131207576 + MLT1J LTR MaLR 7 200 -311 1079 236 52 35 chr9 11064156 11064524 -131206920 + L1ME1 LINE L1 5769 6142 -24 311 275 28 18 chr9 11064676 11064785 -131206659 + MIR SINE MIR 147 256 -6 1246 256 28 19 chr9 11065110 11065470 -131205974 + MLT1A1 LTR MaLR 1 363 -2 320 332 22 74 chr9 11067900 11068129 -131203315 - MIR SINE MIR -19 243 27 267 31 0 0 chr9 11068277 11068309 -131203135 + (CA)n Simple_repeat Simple_repeat 1 32 0 904 209 33 33 chr9 11068669 11068884 -131202560 + MER20 DNA MER1_type 1 215 -4 226 42 0 167 chr9 11069906 11069954 -131201490 - L1M2 LINE L1 -491 5821 5782 345 195 11 11 chr9 11069970 11070057 -131201387 - L1M2 LINE L1 -507 5793 5707 631 175 0 0 chr9 11070057 11070173 -131201271 + L1MA7 LINE L1 6170 6289 -2 225 239 65 33 chr9 11070227 11070319 -131201125 + L1ME4a LINE L1 5992 6086 -35 775 328 82 29 chr9 11070321 11070812 -131200632 + L3 LINE CR1 1052 1568 -9 261 57 0 0 chr9 11071038 11071073 -131200371 + (TA)n Simple_repeat Simple_repeat 2 36 0 831 192 15 56 chr9 11071190 11071388 -131200056 + MLT1A1 LTR MaLR 165 354 -11 21 0 0 0 chr9 11071543 11071564 -131199880 + AT_rich Low_complexity Low_complexity 1 21 0 201 158 0 26 chr9 11071625 11071663 -131199781 + MIR SINE MIR 219 255 -7 215 347 48 9 chr9 11071765 11071914 -131199530 + MER5A DNA MER1_type 1 164 -25 435 38 0 0 chr9 11073741 11073794 -131197650 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 1833 149 7 3 chr9 11073796 11074078 -131197366 - AluSx SINE Alu -29 283 1 22 88 0 0 chr9 11074127 11074184 -131197260 + AT_rich Low_complexity Low_complexity 1 57 0 384 384 83 35 chr9 11074246 11074644 -131196800 - L2 LINE L2 -1 3271 2855 240 328 71 74 chr9 11074970 11075281 -131196163 - L2 LINE L2 -880 2434 2125 671 262 52 98 chr9 11075349 11075716 -131195728 - L1ME2 LINE L1 0 6164 5815 628 225 0 48 chr9 11075713 11075900 -131195544 - L1M4 LINE L1 -2413 3733 3556 * 26 0 0 0 chr9 11076092 11076118 -131195326 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 11076240 11076268 -131195176 + AT_rich Low_complexity Low_complexity 1 28 0 2374 41 0 0 chr9 11076606 11076899 -131194545 + AluY SINE Alu 1 293 -18 291 191 0 0 chr9 11079007 11079075 -131192369 + (TA)n Simple_repeat Simple_repeat 1 68 0 212 169 51 0 chr9 11079096 11079155 -131192289 + (TA)n Simple_repeat Simple_repeat 1 62 0 318 106 0 0 chr9 11079170 11079217 -131192227 + (TA)n Simple_repeat Simple_repeat 2 48 0 1813 196 3 0 chr9 11079987 11080323 -131191121 + L1PB4 LINE L1 5808 6144 -12 284 267 145 23 chr9 11081738 11081869 -131189575 + MLT1J2 LTR MaLR 132 278 -172 1491 169 46 42 chr9 11082642 11082949 -131188495 - AluSq SINE Alu 0 308 1 686 314 59 26 chr9 11083711 11084172 -131187272 + L1ME LINE L1 5321 5796 -374 23 86 0 0 chr9 11084185 11084243 -131187201 + AT_rich Low_complexity Low_complexity 1 58 0 350 235 51 0 chr9 11084272 11084370 -131187074 + MER20 DNA MER1_type 113 215 -4 697 210 126 29 chr9 11084415 11084653 -131186791 + MER96B DNA MER1_type? 156 416 -1 210 174 0 22 chr9 11085653 11085699 -131185745 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 299 97 8 chr9 11085862 11085996 -131185448 - MER117 DNA MER1_type -51 146 1 27 49 0 0 chr9 11086744 11086785 -131184659 + AT_rich Low_complexity Low_complexity 1 41 0 404 233 47 40 chr9 11087062 11087212 -131184232 + HAL1b LINE L1 1196 1346 -2 33 25 0 0 chr9 11088005 11088045 -131183399 + AT_rich Low_complexity Low_complexity 1 40 0 29 60 0 0 chr9 11088342 11088392 -131183052 + AT_rich Low_complexity Low_complexity 1 50 0 405 260 89 45 chr9 11088619 11088865 -131182579 - MIR SINE MIR -3 259 3 30 0 0 0 chr9 11088964 11088994 -131182450 + AT_rich Low_complexity Low_complexity 1 30 0 194 114 0 23 chr9 11089300 11089344 -131182100 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 229 313 0 0 chr9 11089635 11089702 -131181742 + (CA)n Simple_repeat Simple_repeat 1 67 0 22 0 0 0 chr9 11089890 11089912 -131181532 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 11090529 11090558 -131180886 + AT_rich Low_complexity Low_complexity 1 29 0 197 233 0 17 chr9 11091550 11091610 -131179834 + CT-rich Low_complexity Low_complexity 3 61 0 1652 177 3 21 chr9 11091756 11092088 -131179356 + AluSx SINE Alu 1 327 0 549 64 13 0 chr9 11092736 11092814 -131178630 - L1PA2 LINE L1 -3 6152 6074 2511 150 7 25 chr9 11093030 11093469 -131177975 + Tigger2a DNA MER2_type 4 434 0 22 0 0 0 chr9 11093515 11093537 -131177907 + AT_rich Low_complexity Low_complexity 1 22 0 26 88 0 0 chr9 11093557 11093625 -131177819 + AT_rich Low_complexity Low_complexity 1 68 0 212 191 60 71 chr9 11094288 11094372 -131177072 - MIR SINE MIR 0 262 180 1142 315 77 55 chr9 11094470 11095066 -131176378 - MER45C DNA AcHobo -343 610 2 180 111 0 0 chr9 11096080 11096107 -131175337 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 317 199 43 21 chr9 11097082 11097223 -131174221 + (TA)n Simple_repeat Simple_repeat 2 145 0 6541 42 0 0 chr9 11097440 11098236 -131173208 + L1PA4 LINE L1 5357 6152 -3 890 250 15 10 chr9 11098508 11098712 -131172732 + MLT1C LTR MaLR 263 467 0 851 70 8 0 chr9 11098765 11098893 -131172551 + (TCTA)n Simple_repeat Simple_repeat 3 131 0 201 171 49 0 chr9 11099901 11099942 -131171502 + G-rich Low_complexity Low_complexity 3 45 0 365 253 0 23 chr9 11099970 11100057 -131171387 + L2 LINE L2 3186 3270 -2 1797 177 39 52 chr9 11100122 11100330 -131171114 + MSTB2 LTR MaLR 1 210 -247 306 0 0 0 chr9 11100330 11100364 -131171080 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 351 0 0 0 chr9 11100363 11100402 -131171042 + (TG)n Simple_repeat Simple_repeat 1 39 0 1797 177 39 52 chr9 11100364 11100656 -131170788 + MSTB2 LTR MaLR 210 457 0 1504 103 0 5 chr9 11102360 11102563 -131168881 + AluSx SINE Alu 17 218 -94 47 0 0 0 chr9 11102574 11102621 -131168823 + AT_rich Low_complexity Low_complexity 1 47 0 1696 178 28 0 chr9 11105300 11105621 -131165823 + L1MC1 LINE L1 5986 6315 -18 2538 147 43 9 chr9 11106506 11106947 -131164497 + MER65C LTR ERV1 1 456 -5 1259 258 101 75 chr9 11107218 11107979 -131163465 + MER20B DNA MER1_type 3 783 0 2361 184 93 77 chr9 11108142 11108763 -131162681 + MER39 LTR ERV1 75 705 -2 273 173 0 0 chr9 11108908 11108960 -131162484 + L1ME1 LINE L1 3680 3731 -2415 2980 253 49 35 chr9 11109094 11110235 -131161209 + L1ME1 LINE L1 5007 6161 -5 227 300 29 0 chr9 11110872 11110942 -131160502 - L2 LINE L2 -5 3267 3196 257 167 19 0 chr9 11111277 11111331 -131160113 + GA-rich Low_complexity Low_complexity 1 55 0 425 299 147 5 chr9 11112268 11112472 -131158972 + MIR SINE MIR 28 260 -2 283 378 45 0 chr9 11112657 11112768 -131158676 + L2 LINE L2 3145 3260 -12 184 296 56 0 chr9 11113831 11113885 -131157559 - L2 LINE L2 -4 3268 3212 204 250 0 0 chr9 11114004 11114052 -131157392 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1787 149 4 0 chr9 11114615 11114916 -131156528 - AluSq SINE Alu 0 302 1 1007 136 13 0 chr9 11115138 11115293 -131156151 + AluSp SINE Alu 152 308 -5 31 26 0 0 chr9 11115293 11115331 -131156113 + AT_rich Low_complexity Low_complexity 1 38 0 2107 141 45 17 chr9 11116219 11116573 -131154871 + THE1B LTR MaLR 1 364 0 186 71 0 0 chr9 11116885 11116913 -131154531 + (A)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr9 11118254 11118278 -131153166 + AT_rich Low_complexity Low_complexity 1 24 0 280 223 43 0 chr9 11119154 11119273 -131152171 + (TA)n Simple_repeat Simple_repeat 1 124 0 268 267 91 61 chr9 11119577 11119742 -131151702 - MIR SINE MIR -30 232 63 21 0 0 0 chr9 11119773 11119794 -131151650 + AT_rich Low_complexity Low_complexity 1 21 0 342 276 80 75 chr9 11119832 11120031 -131151413 + MIR SINE MIR 63 262 0 769 265 87 107 chr9 11120072 11120152 -131151292 + MLT1G1 LTR MaLR 6 86 -509 1760 141 87 14 chr9 11120152 11120507 -131150937 + L1MA7 LINE L1 5911 6291 0 769 265 87 107 chr9 11120507 11120864 -131150580 + MLT1G1 LTR MaLR 86 434 -161 21 57 0 0 chr9 11120943 11120978 -131150466 + AT_rich Low_complexity Low_complexity 1 35 0 264 219 31 0 chr9 11120978 11121042 -131150402 + MLT1G1 LTR MaLR 522 587 -8 2161 118 3 0 chr9 11121160 11121456 -131149988 - AluSx SINE Alu -15 297 1 5047 130 60 24 chr9 11123553 11124249 -131147195 - Tigger3b DNA MER2_type -1799 1229 490 1907 151 6 62 chr9 11124249 11124606 -131146838 + MER1B DNA MER1_type 1 337 0 5047 130 60 24 chr9 11124606 11124831 -131146613 - Tigger3b DNA MER2_type -2538 490 275 554 194 10 0 chr9 11124833 11124931 -131146513 - Tigger3b DNA MER2_type -1132 99 1 250 310 22 92 chr9 11125115 11125299 -131146145 + L2 LINE L2 2868 3038 -234 186 310 220 20 chr9 11125410 11125510 -131145934 + L2 LINE L2 3137 3256 -16 189 107 0 0 chr9 11127117 11127145 -131144299 + (TC)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr9 11127209 11127238 -131144206 + AT_rich Low_complexity Low_complexity 1 29 0 2458 61 0 6 chr9 11127384 11127697 -131143747 - AluY SINE Alu 0 311 1 322 244 56 0 chr9 11128459 11128549 -131142895 - MER53 DNA DNA -93 96 2 309 281 22 0 chr9 11129353 11129442 -131142002 + L1MC4 LINE L1 6614 6704 -1338 198 103 0 0 chr9 11129442 11129471 -131141973 + (TA)n Simple_repeat Simple_repeat 1 29 0 26 30 0 0 chr9 11130541 11130574 -131140870 + AT_rich Low_complexity Low_complexity 1 33 0 407 330 91 17 chr9 11130673 11130903 -131140541 - MIR SINE MIR -12 250 4 425 353 8 0 chr9 11130966 11131099 -131140345 + MIR SINE MIR 16 149 -59 2154 119 42 33 chr9 11131199 11131560 -131139884 + THE1B LTR MaLR 1 364 0 10394 103 33 40 chr9 11131560 11133150 -131138294 + THE1B-int LTR MaLR 1 1580 0 2093 134 42 28 chr9 11133150 11133509 -131137935 + THE1B LTR MaLR 1 364 0 392 263 52 36 chr9 11133717 11133888 -131137556 + MLT1H LTR MaLR 330 501 -48 1078 175 0 0 chr9 11133888 11134071 -131137373 - MER58A DNA MER1_type 0 224 42 265 207 0 0 chr9 11134137 11134195 -131137249 + MLT1H LTR MaLR 491 548 -1 255 274 0 0 chr9 11134471 11134533 -131136911 + (CA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr9 11134687 11134715 -131136729 + AT_rich Low_complexity Low_complexity 1 28 0 2229 106 3 10 chr9 11135282 11135594 -131135850 + AluSg SINE Alu 1 310 0 1281 205 28 59 chr9 11136372 11136660 -131134784 + AluJo SINE Alu 1 279 -33 345 47 0 0 chr9 11136667 11136710 -131134734 + (TAA)n Simple_repeat Simple_repeat 2 44 0 712 178 82 0 chr9 11137284 11137430 -131134014 - MER20 DNA MER1_type -61 158 1 224 224 0 0 chr9 11137743 11137792 -131133652 + (TATG)n Simple_repeat Simple_repeat 4 52 0 21 71 0 0 chr9 11138585 11138627 -131132817 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr9 11139208 11139237 -131132207 + AT_rich Low_complexity Low_complexity 1 29 0 1231 172 84 56 chr9 11139248 11139498 -131131946 - AluJo SINE Alu -55 257 1 33 66 0 0 chr9 11139568 11139629 -131131815 + AT_rich Low_complexity Low_complexity 1 61 0 2295 117 0 0 chr9 11139907 11140215 -131131229 - AluSx SINE Alu -4 308 1 21 0 0 0 chr9 11190257 11190278 -131081166 + AT_rich Low_complexity Low_complexity 1 21 0 2191 193 62 32 chr9 11190325 11190858 -131080586 - L1MB8 LINE L1 -5 6173 5625 318 325 9 18 chr9 11192416 11192530 -131078914 + MIR3 SINE MIR 91 203 -5 247 258 76 106 chr9 11193449 11193581 -131077863 + MER91B DNA MER1_type 2 129 -61 244 269 97 43 chr9 11193606 11193699 -131077745 + MER91B DNA MER1_type 91 188 -2 203 86 0 29 chr9 11193794 11193829 -131077615 + (GA)n Simple_repeat Simple_repeat 1 34 0 221 121 0 48 chr9 11195555 11195638 -131075806 + (CAAAAA)n Simple_repeat Simple_repeat 3 81 0 465 293 104 4 chr9 11195780 11195976 -131075468 + MIR SINE MIR 48 257 -5 2136 77 13 7 chr9 11196255 11196555 -131074889 + AluY SINE Alu 1 302 -9 228 35 0 0 chr9 11197141 11197170 -131074274 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2219 71 0 0 chr9 11197172 11197452 -131073992 - AluY SINE Alu -31 280 1 289 204 65 75 chr9 11197999 11198092 -131073352 - L2 LINE L2 -1 3312 3221 21 36 0 0 chr9 11198423 11198451 -131072993 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 11198739 11198769 -131072675 + (CA)n Simple_repeat Simple_repeat 1 30 0 677 217 76 60 chr9 11198882 11198993 -131072451 - MER5A DNA MER1_type -2 187 70 1453 183 7 47 chr9 11198993 11199294 -131072150 - AluJo SINE Alu -23 289 1 677 217 76 60 chr9 11199294 11199366 -131072078 - MER5A DNA MER1_type -119 70 1 22 0 0 0 chr9 11200358 11200380 -131071064 + AT_rich Low_complexity Low_complexity 1 22 0 426 234 236 1 chr9 11200487 11200666 -131070778 + MIR SINE MIR 20 232 -30 212 231 96 0 chr9 11200645 11200697 -131070747 + L2 LINE L2 3216 3272 0 * 287 315 102 9 chr9 11200777 11200885 -131070559 + MIR3 SINE MIR 89 206 -2 474 287 102 0 chr9 11200984 11201141 -131070303 - MER5B DNA MER1_type -2 176 4 228 35 0 0 chr9 11201504 11201533 -131069911 + (CA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr9 11201544 11201578 -131069866 + AT_rich Low_complexity Low_complexity 1 34 0 349 314 73 0 chr9 11201714 11201838 -131069606 + L2 LINE L2 3180 3312 -1 304 273 0 34 chr9 11201853 11201941 -131069503 - L1ME LINE L1 -682 5439 5355 241 325 62 19 chr9 11202306 11202466 -131068978 + MIR3 SINE MIR 33 199 -9 258 132 75 0 chr9 11202564 11202617 -131068827 + Alu SINE Alu 246 302 0 1135 186 81 39 chr9 11202893 11203237 -131068207 - MLT1E3 LTR MaLR -5 619 231 392 266 47 90 chr9 11203885 11203984 -131067460 + MIR SINE MIR 25 127 -135 2381 63 7 0 chr9 11203984 11204286 -131067158 - AluY SINE Alu -7 304 1 392 266 47 90 chr9 11204286 11204419 -131067025 + MIR SINE MIR 127 247 -15 251 218 18 0 chr9 11204421 11204476 -131066968 + (TATG)n Simple_repeat Simple_repeat 2 57 0 1110 198 0 5 chr9 11204621 11204813 -131066631 + AluJb SINE Alu 85 275 -37 39 22 0 0 chr9 11204820 11204866 -131066578 + AT_rich Low_complexity Low_complexity 1 46 0 1875 146 0 10 chr9 11204969 11205277 -131066167 - AluSg SINE Alu -5 305 1 211 111 28 0 chr9 11206533 11206569 -131064875 + G-rich Low_complexity Low_complexity 1 37 0 186 143 0 0 chr9 11207402 11207437 -131064007 + (T)n Simple_repeat Simple_repeat 1 35 0 321 310 115 48 chr9 11209424 11209680 -131061764 + MLT1L LTR MaLR 175 457 -158 1618 204 25 67 chr9 11209680 11210204 -131061240 + MLT1D LTR MaLR 1 502 -3 321 310 115 48 chr9 11210204 11210260 -131061184 + MLT1L LTR MaLR 457 508 -107 669 272 217 19 chr9 11210550 11210863 -131060581 + L2 LINE L2 2428 2802 -512 250 260 71 97 chr9 11210869 11211023 -131060421 + MLT1I LTR MaLR 242 391 -18 284 272 54 33 chr9 11212983 11213075 -131058369 - MIR3 SINE MIR -2 206 113 1117 223 42 28 chr9 11213991 11214278 -131057166 + MLT1E2 LTR MaLR 1 291 -335 1812 182 91 41 chr9 11214619 11215058 -131056386 + LOR1b LTR ERV1 1 461 0 215 31 31 0 chr9 11215482 11215514 -131055930 + (TA)n Simple_repeat Simple_repeat 2 34 0 651 47 12 0 chr9 11215514 11215600 -131055844 - L1PA5 LINE L1 -9 6145 6059 22 0 0 0 chr9 11215617 11215639 -131055805 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 11215656 11215700 -131055744 + AT_rich Low_complexity Low_complexity 1 44 0 226 188 21 0 chr9 11217051 11217099 -131054345 + (TA)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr9 11217129 11217151 -131054293 + AT_rich Low_complexity Low_complexity 1 22 0 317 287 40 33 chr9 11217325 11217475 -131053969 + MIR SINE MIR 110 260 -2 21 82 0 0 chr9 11217510 11217559 -131053885 + AT_rich Low_complexity Low_complexity 1 49 0 213 429 15 0 chr9 11217749 11217882 -131053562 + MIR3 SINE MIR 33 167 -41 261 122 0 41 chr9 11218597 11218646 -131052798 + L1PA7 LINE L1 5 51 -6410 * 31052 108 6 23 chr9 11218628 11224807 -131046637 + L1PA7 LINE L1 292 6461 -8 5451 173 33 18 chr9 11225311 11227189 -131044255 - L1MA4A LINE L1 -5 6298 4392 702 318 40 16 chr9 11227172 11227493 -131043951 - L1MC/D LINE L1 -1985 5823 5495 * 1945 142 0 40 chr9 11227719 11228042 -131043402 - AluSx SINE Alu -1 311 2 228 367 11 57 chr9 11229764 11229915 -131041529 + MIR SINE MIR 33 176 -62 286 255 92 41 chr9 11229943 11230041 -131041403 - L2 LINE L2 -3 3310 3208 189 0 0 0 chr9 11231776 11231797 -131039647 + (CA)n Simple_repeat Simple_repeat 2 22 0 243 377 83 30 chr9 11232458 11232988 -131038456 - L2 LINE L2 -527 2787 2230 340 273 23 0 chr9 11234485 11234573 -131036871 - L1MC4 LINE L1 -1339 6703 6614 23 0 0 0 chr9 11235325 11235348 -131036096 + AT_rich Low_complexity Low_complexity 1 23 0 400 259 47 59 chr9 11235911 11236081 -131035363 - Charlie8 DNA MER1_type -2188 229 62 827 204 11 11 chr9 11236986 11237167 -131034277 - AluJb SINE Alu -9 303 123 216 250 0 0 chr9 11237369 11237413 -131034031 + CT-rich Low_complexity Low_complexity 4 47 0 1758 180 13 0 chr9 11239103 11239403 -131032041 - AluJb SINE Alu -8 304 1 192 386 0 39 chr9 11239659 11239786 -131031658 - L2 LINE L2 -255 3058 2937 1112 217 91 0 chr9 11241519 11241578 -131029866 - AluJo SINE Alu 0 349 297 792 96 0 0 chr9 11241578 11241693 -131029751 + (TCCCC)n Simple_repeat Simple_repeat 2 116 0 1112 217 91 0 chr9 11241693 11241841 -131029603 - AluJo SINE Alu -52 297 109 180 77 0 0 chr9 11241841 11241867 -131029577 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1112 217 91 0 chr9 11241867 11241949 -131029495 - AluJo SINE Alu -240 109 36 279 184 13 79 chr9 11242904 11242980 -131028464 + 7SK RNA RNA 16 86 -107 434 282 160 0 chr9 11243507 11243663 -131027781 - MER5A DNA MER1_type -1 188 8 24 32 0 0 chr9 11244441 11244472 -131026972 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr9 11244974 11245026 -131026418 + AT_rich Low_complexity Low_complexity 1 52 0 303 154 0 144 chr9 11245463 11245567 -131025877 + L1MC4 LINE L1 6615 6703 -1339 22 0 0 0 chr9 11245976 11245998 -131025446 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 11247722 11247743 -131023701 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 11247777 11247800 -131023644 + AT_rich Low_complexity Low_complexity 1 23 0 1435 306 50 28 chr9 11248950 11249588 -131021856 + MLT2F LTR ERVL 11 628 0 375 251 89 10 chr9 11249766 11249909 -131021535 + MLT1G LTR MaLR 413 585 -10 195 292 67 22 chr9 11250755 11250844 -131020600 - MIR SINE MIR -58 204 112 629 325 0 0 chr9 11251024 11251181 -131020263 - MIR SINE MIR -100 162 6 424 297 21 68 chr9 11251283 11251475 -131019969 + L2 LINE L2 3131 3313 0 4598 218 17 34 chr9 11252649 11254544 -131016900 + L1MC/D LINE L1 3860 5718 -615 378 198 79 20 chr9 11254755 11254856 -131016588 - MLT1J2 LTR MaLR -239 211 105 386 183 29 0 chr9 11254894 11254998 -131016446 + L1M4 LINE L1 3869 3975 -2171 522 341 78 15 chr9 11256068 11256273 -131015171 - MIR SINE MIR -44 218 1 26 0 0 0 chr9 11256337 11256363 -131015081 + AT_rich Low_complexity Low_complexity 1 26 0 258 371 53 7 chr9 11258926 11259077 -131012367 + MIR SINE MIR 61 218 -44 367 262 28 28 chr9 11259317 11259424 -131012020 + MIR3 SINE MIR 54 160 -48 199 276 69 0 chr9 11260065 11260123 -131011321 + MIR SINE MIR 92 153 -109 196 345 76 25 chr9 11261146 11261265 -131010179 + L2 LINE L2 3147 3271 -1 7617 52 5 48 chr9 11261360 11263221 -131008223 - L1PA6 LINE L1 -4 6150 4337 201 317 17 100 chr9 11263403 11263523 -131007921 + L2 LINE L2 3182 3291 -22 30 59 0 0 chr9 11263539 11263590 -131007854 + AT_rich Low_complexity Low_complexity 1 51 0 5527 66 19 4 chr9 11263652 11264393 -131007051 - L1PA7 LINE L1 0 6154 5403 889 213 48 54 chr9 11265673 11265782 -131005662 - L1MA4 LINE L1 -6 6294 6186 2323 105 3 0 chr9 11265782 11266088 -131005356 - AluSp SINE Alu -6 307 1 889 213 48 54 chr9 11266088 11266154 -131005290 - L1MA4 LINE L1 -114 6186 6121 1933 130 3 3 chr9 11266154 11266447 -131004997 + AluSx SINE Alu 1 293 -19 889 213 48 54 chr9 11266447 11266584 -131004860 - L1MA4 LINE L1 -179 6121 5983 240 246 29 0 chr9 11266839 11266908 -131004536 - MER117 DNA MER1_type -51 146 76 1834 136 5 87 chr9 11267113 11267502 -131003942 + MER4A LTR ERV1 1 357 -307 447 176 119 31 chr9 11267556 11267715 -131003729 + MER4C LTR ERV1 293 465 0 31 44 0 0 chr9 11268061 11268106 -131003338 + AT_rich Low_complexity Low_complexity 1 45 0 280 254 0 0 chr9 11268112 11268175 -131003269 + MLT1D LTR MaLR 3 65 -440 1127 117 6 6 chr9 11268176 11268339 -131003105 - AluSx SINE Alu -149 163 1 21 71 0 0 chr9 11268813 11268855 -131002589 + AT_rich Low_complexity Low_complexity 1 42 0 532 287 67 15 chr9 11268855 11269050 -131002394 - MIR SINE MIR -17 245 41 270 308 114 35 chr9 11269148 11269437 -131002007 - L2 LINE L2 0 3313 3002 312 284 7 61 chr9 11272910 11273058 -130998386 - L1MEd LINE L1 -5968 151 12 2331 91 3 0 chr9 11273849 11274156 -130997288 - AluSp SINE Alu -5 308 1 2137 117 3 3 chr9 11275052 11275359 -130996085 - AluSx SINE Alu -5 307 1 524 298 98 9 chr9 11275756 11275971 -130995473 + MIR SINE MIR 23 256 -6 432 132 0 0 chr9 11276032 11276100 -130995344 - MER41A LTR ERV1 -86 468 401 257 177 152 0 chr9 11276483 11276562 -130994882 + L1MA4A LINE L1 6208 6298 -5 263 289 44 31 chr9 11277648 11277807 -130993637 - HAL1 LINE L1 -5 2502 2342 203 393 8 25 chr9 11278546 11278668 -130992776 + MIR3 SINE MIR 37 156 -52 1317 249 83 18 chr9 11278998 11279199 -130992245 - Charlie1b DNA MER1_type -2238 523 337 2416 58 7 0 chr9 11279199 11279507 -130991937 + AluY SINE Alu 1 310 -1 1317 249 83 18 chr9 11279507 11279796 -130991648 - Charlie1b DNA MER1_type -2424 337 1 383 313 6 3 chr9 11280619 11280787 -130990657 - MIR SINE MIR -11 251 33 2192 89 0 0 chr9 11280978 11281285 -130990159 + AluSg SINE Alu 1 307 0 352 314 0 0 chr9 11281285 11281371 -130990073 + L2 LINE L2 3220 3305 -8 459 320 154 0 chr9 11281513 11281669 -130989775 - MER5A DNA MER1_type -6 183 4 2444 72 0 7 chr9 11282370 11282677 -130988767 - AluY SINE Alu -4 307 3 275 382 14 14 chr9 11282679 11282791 -130988653 - MIR SINE MIR -111 151 37 374 183 0 0 chr9 11282791 11282873 -130988571 + L1PB4 LINE L1 6068 6149 -7 275 382 14 14 chr9 11282873 11282904 -130988540 - MIR SINE MIR -224 38 8 189 341 11 23 chr9 11283215 11283303 -130988141 + L2 LINE L2 2261 2347 -967 226 296 0 0 chr9 11284012 11284066 -130987378 + L2 LINE L2 3219 3272 0 27 0 0 0 chr9 11284156 11284183 -130987261 + AT_rich Low_complexity Low_complexity 1 27 0 341 274 19 0 chr9 11285043 11285149 -130986295 - L1MC5 LINE L1 -67 7894 7787 362 288 54 0 chr9 11285325 11285436 -130986008 + L1ME3A LINE L1 6045 6161 -9 211 269 15 30 chr9 11286201 11286268 -130985176 + MIR SINE MIR 87 152 -110 190 376 28 50 chr9 11287449 11287590 -130983854 + MIR SINE MIR 9 146 -116 632 274 13 27 chr9 11288284 11288498 -130982946 - MIR SINE MIR 0 262 55 356 281 125 44 chr9 11289473 11289768 -130981676 - HAL1 LINE L1 -127 2380 2062 650 289 64 68 chr9 11289860 11290314 -130981130 - HAL1 LINE L1 -607 1900 1449 1726 140 68 0 chr9 11291215 11291510 -130979934 - AluSx SINE Alu 0 313 1 542 335 6 0 chr9 11292144 11292320 -130979124 + MER102b DNA MER1_type 154 330 -11 24 32 0 0 chr9 11294767 11294798 -130976646 + AT_rich Low_complexity Low_complexity 1 31 0 3511 98 17 2 chr9 11295147 11295669 -130975775 - L1MA2 LINE L1 -6 6298 5769 2998 46 0 3 chr9 11295677 11296046 -130975398 - L1PA5 LINE L1 -8 6146 5779 953 35 0 0 chr9 11296046 11296161 -130975283 + L1P2 LINE L1 5461 5575 -580 * 2834 165 8 36 chr9 11296148 11297844 -130973600 - L1MA2 LINE L1 -507 5797 4052 678 216 0 49 chr9 11298330 11298492 -130972952 - FRAM SINE Alu -12 164 11 26 0 0 0 chr9 11299450 11299476 -130971968 + AT_rich Low_complexity Low_complexity 1 26 0 229 250 104 10 chr9 11300230 11300326 -130971118 + MIR SINE MIR 102 206 -56 24 0 0 0 chr9 11301219 11301243 -130970201 + AT_rich Low_complexity Low_complexity 1 24 0 2199 108 20 6 chr9 11302364 11302707 -130968737 + L1MA2 LINE L1 5957 6304 0 195 308 13 51 chr9 11303624 11303702 -130967742 + L2 LINE L2 3099 3173 -99 386 286 130 25 chr9 11303981 11304142 -130967302 + MIR SINE MIR 56 233 -29 230 321 123 45 chr9 11304800 11305038 -130966406 + MLT1K LTR MaLR 142 405 -183 207 0 0 0 chr9 11305038 11305061 -130966383 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 230 321 123 45 chr9 11305061 11305090 -130966354 + MLT1K LTR MaLR 405 430 -158 1487 193 89 65 chr9 11305131 11305624 -130965820 + MLT1D LTR MaLR 1 505 0 864 144 0 0 chr9 11306206 11306338 -130965106 - FLAM_C SINE Alu 0 133 2 226 204 23 0 chr9 11306797 11306841 -130964603 + L2 LINE L2 3266 3310 -3 25 65 0 0 chr9 11306936 11306982 -130964462 + AT_rich Low_complexity Low_complexity 1 46 0 518 333 61 0 chr9 11307063 11307261 -130964183 + MIR SINE MIR 47 256 -6 2073 246 54 27 chr9 11309311 11309904 -130961540 - MER90 LTR ERV1 0 614 6 463 343 111 11 chr9 11309936 11310207 -130961237 + L2 LINE L2 2501 2798 -516 687 318 82 21 chr9 11310254 11310584 -130960860 + L2 LINE L2 2931 3280 -33 270 56 0 0 chr9 11311666 11311702 -130959742 + (TG)n Simple_repeat Simple_repeat 1 36 0 688 186 0 0 chr9 11311887 11312000 -130959444 + FLAM_C SINE Alu 1 113 -30 232 111 37 0 chr9 11312065 11312119 -130959325 + (TA)n Simple_repeat Simple_repeat 1 56 0 376 297 45 0 chr9 11312309 11312420 -130959024 - L2 LINE L2 -33 3280 3165 591 160 17 0 chr9 11312423 11312598 -130958846 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 36 0 0 chr9 11312607 11312635 -130958809 + AT_rich Low_complexity Low_complexity 1 28 0 237 65 0 0 chr9 11313323 11313354 -130958090 + (T)n Simple_repeat Simple_repeat 1 31 0 2434 50 0 13 chr9 11313487 11313804 -130957640 - L1PA5 LINE L1 -8 6146 5834 351 174 0 0 chr9 11314314 11314400 -130957044 + GA-rich Low_complexity Low_complexity 2 87 0 390 330 77 6 chr9 11315571 11315753 -130955691 + MIR SINE MIR 47 241 -21 1405 131 31 207 chr9 11315911 11316332 -130955112 + MER7A DNA MER2_type 2 346 0 1299 205 4 15 chr9 11316476 11316744 -130954700 + AluJo SINE Alu 3 267 -45 245 192 0 0 chr9 11316744 11316796 -130954648 + (TA)n Simple_repeat Simple_repeat 1 52 0 442 250 0 43 chr9 11316797 11316913 -130954531 + MER77 LTR ERV1 491 601 -4 189 360 50 0 chr9 11316915 11317015 -130954429 - L2 LINE L2 -20 3293 3189 561 306 56 0 chr9 11317167 11317327 -130954117 - MIR SINE MIR -71 191 23 254 352 112 60 chr9 11317827 11318396 -130953048 - L2 LINE L2 -5 3267 2688 595 312 86 17 chr9 11318460 11318694 -130952750 + MIR SINE MIR 11 260 -2 21 36 0 0 chr9 11318746 11318774 -130952670 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr9 11319141 11319169 -130952275 + AT_rich Low_complexity Low_complexity 1 28 0 554 254 28 14 chr9 11319784 11319926 -130951518 + MER106A DNA MER1_type 1 144 -92 288 0 0 0 chr9 11321677 11321709 -130949735 + (TA)n Simple_repeat Simple_repeat 2 33 0 34 42 0 0 chr9 11321830 11321878 -130949566 + AT_rich Low_complexity Low_complexity 1 48 0 2802 178 55 3 chr9 11321886 11322612 -130948832 + L1MC1 LINE L1 5442 6322 -11 25 31 0 0 chr9 11322616 11322648 -130948796 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr9 11324276 11324300 -130947144 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr9 11325643 11325669 -130945775 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr9 11326299 11326332 -130945112 + AT_rich Low_complexity Low_complexity 1 33 0 594 281 97 0 chr9 11327451 11327647 -130943797 + MER58C DNA MER1_type 1 215 0 1710 217 43 27 chr9 11328073 11328543 -130942901 + MLT1F LTR MaLR 5 542 0 264 119 51 0 chr9 11328703 11328762 -130942682 + (TA)n Simple_repeat Simple_repeat 1 62 0 517 294 91 5 chr9 11329291 11329512 -130941932 + MIR SINE MIR 13 252 -10 9460 200 31 10 chr9 11330620 11331055 -130940389 + L1PA14 LINE L1 3240 3664 -2497 465 50 0 0 chr9 11331055 11331115 -130940329 + (CA)n Simple_repeat Simple_repeat 2 61 0 9460 200 31 10 chr9 11331115 11333555 -130937889 + L1PA14 LINE L1 3664 6160 -1 256 319 11 11 chr9 11333595 11333689 -130937755 + MIR SINE MIR 112 205 -57 2004 123 0 35 chr9 11334515 11334831 -130936613 + AluSx SINE Alu 1 305 -7 1169 223 47 76 chr9 11335052 11335082 -130936362 - MER110A LTR ERV1 0 468 482 1142 215 55 70 chr9 11335082 11335557 -130935887 - MER110A LTR ERV1 0 468 1 579 216 60 117 chr9 11336853 11336896 -130934548 + L2 LINE L2 3038 3082 -231 468 0 0 0 chr9 11336896 11336948 -130934496 + (CA)n Simple_repeat Simple_repeat 2 53 0 579 216 60 117 chr9 11336948 11337187 -130934257 + L2 LINE L2 3082 3304 -9 344 347 52 21 chr9 11337594 11337787 -130933657 + L2 LINE L2 1876 2074 -1240 796 273 72 29 chr9 11337948 11338325 -130933119 - Charlie7 DNA MER1_type -1889 723 331 235 180 20 0 chr9 11338507 11338557 -130932887 + (TAA)n Simple_repeat Simple_repeat 1 51 0 195 302 0 32 chr9 11338601 11338664 -130932780 - MIR SINE MIR -6 256 196 291 362 133 20 chr9 11338679 11338875 -130932569 - L3 LINE CR1 -1325 252 35 1358 82 117 0 chr9 11339419 11339625 -130931819 + MER30 DNA MER1_type 1 230 0 220 244 8 73 chr9 11340187 11340310 -130931134 + T-rich Low_complexity Low_complexity 6 120 0 210 360 90 9 chr9 11340421 11340485 -130930959 - L2 LINE L2 0 3272 3215 7047 53 0 3 chr9 11340485 11341913 -130929531 + L1PA6 LINE L1 4716 6148 -6 210 360 90 9 chr9 11341913 11341959 -130929485 - L2 LINE L2 -57 3215 3153 270 0 0 0 chr9 11342763 11342793 -130928651 + (TC)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr9 11344263 11344286 -130927158 + AT_rich Low_complexity Low_complexity 1 23 0 261 233 14 14 chr9 11344402 11344475 -130926969 + (TA)n Simple_repeat Simple_repeat 1 73 0 21 82 0 0 chr9 11346416 11346465 -130924979 + AT_rich Low_complexity Low_complexity 1 49 0 1745 138 42 18 chr9 11346486 11346769 -130924675 + AluSg SINE Alu 4 293 -17 305 274 32 42 chr9 11347343 11347438 -130924006 + MIR SINE MIR 86 179 -83 31 26 0 0 chr9 11347511 11347549 -130923895 + AT_rich Low_complexity Low_complexity 1 38 0 2530 168 33 6 chr9 11347618 11348105 -130923339 + L1MA4A LINE L1 5479 5978 -325 335 262 0 57 chr9 11348126 11348248 -130923196 + L1PB4 LINE L1 5941 6055 -101 269 320 41 10 chr9 11348266 11348363 -130923081 - MIR SINE MIR -71 191 92 21 82 0 0 chr9 11348732 11348781 -130922663 + AT_rich Low_complexity Low_complexity 1 49 0 7703 19 1 1 chr9 11349674 11350899 -130920545 + L1PA2 LINE L1 4931 6155 0 21 0 0 0 chr9 11351725 11351746 -130919698 + AT_rich Low_complexity Low_complexity 1 21 0 314 381 14 14 chr9 11353850 11353989 -130917455 - MIR3 SINE MIR -66 142 4 228 185 37 0 chr9 11354679 11354733 -130916711 + L1MC4 LINE L1 6648 6703 -1339 209 171 0 0 chr9 11355040 11355075 -130916369 + (CA)n Simple_repeat Simple_repeat 2 36 0 195 42 0 0 chr9 11356455 11356479 -130914965 + (TA)n Simple_repeat Simple_repeat 1 24 0 217 359 48 10 chr9 11356490 11356593 -130914851 - MIR SINE MIR -114 148 42 514 178 10 40 chr9 11356776 11356877 -130914567 + Tigger5 DNA MER2_type 2225 2322 -1 22 56 0 0 chr9 11357169 11357205 -130914239 + AT_rich Low_complexity Low_complexity 1 36 0 249 103 0 0 chr9 11358435 11358474 -130912970 + L1PA3 LINE L1 6115 6153 -2 320 365 67 47 chr9 11359453 11359752 -130911692 + L2 LINE L2 2530 2834 -480 227 357 64 32 chr9 11359833 11359990 -130911454 + L2 LINE L2 2897 3058 -214 180 0 0 0 chr9 11362295 11362315 -130909129 + (CA)n Simple_repeat Simple_repeat 1 20 0 1758 180 13 0 chr9 11364994 11365294 -130906150 - AluJb SINE Alu -8 304 1 192 386 0 39 chr9 11365551 11365678 -130905766 - L2 LINE L2 -255 3058 2937 23 0 0 0 chr9 11367014 11367037 -130904407 + AT_rich Low_complexity Low_complexity 1 23 0 261 233 14 14 chr9 11367153 11367226 -130904218 + (TA)n Simple_repeat Simple_repeat 2 74 0 21 82 0 0 chr9 11369169 11369218 -130902226 + AT_rich Low_complexity Low_complexity 1 49 0 1793 117 50 25 chr9 11369239 11369522 -130901922 + AluSg SINE Alu 4 293 -17 312 274 32 42 chr9 11370096 11370191 -130901253 + MIR SINE MIR 86 179 -83 31 26 0 0 chr9 11370264 11370302 -130901142 + AT_rich Low_complexity Low_complexity 1 38 0 2499 170 33 6 chr9 11370371 11370858 -130900586 + L1MA4A LINE L1 5479 5978 -325 335 262 0 57 chr9 11370879 11371001 -130900443 + L1PB4 LINE L1 5941 6055 -101 269 320 41 10 chr9 11371019 11371116 -130900328 - MIR SINE MIR -71 191 92 21 82 0 0 chr9 11371485 11371534 -130899910 + AT_rich Low_complexity Low_complexity 1 49 0 7699 19 1 1 chr9 11372427 11373652 -130897792 + L1PA2 LINE L1 4931 6155 0 21 0 0 0 chr9 11374477 11374498 -130896946 + AT_rich Low_complexity Low_complexity 1 21 0 314 381 14 14 chr9 11376601 11376740 -130894704 - MIR3 SINE MIR -66 142 4 228 185 37 0 chr9 11377430 11377484 -130893960 + L1MC4 LINE L1 6648 6703 -1339 209 171 0 0 chr9 11377791 11377826 -130893618 + (CA)n Simple_repeat Simple_repeat 2 36 0 258 32 0 0 chr9 11381024 11381055 -130890389 + (T)n Simple_repeat Simple_repeat 1 31 0 185 105 0 26 chr9 11382603 11382641 -130888803 + (TG)n Simple_repeat Simple_repeat 2 38 0 204 288 111 9 chr9 11382656 11382764 -130888680 - MIR SINE MIR -63 145 34 310 284 41 58 chr9 11383187 11383393 -130888051 - MIR SINE MIR -39 223 20 254 29 0 0 chr9 11383621 11383655 -130887789 + L1PA6 LINE L1 6117 6150 -4 5814 77 25 7 chr9 11383657 11384875 -130886569 + SVA Other Other 31 1385 -1 25 51 0 0 chr9 11384880 11384919 -130886525 + AT_rich Low_complexity Low_complexity 1 39 0 403 269 99 57 chr9 11386081 11386293 -130885151 + MIR SINE MIR 41 261 -1 4811 204 35 22 chr9 11386790 11388577 -130882867 - L1M2 LINE L1 -511 5801 3986 249 108 0 0 chr9 11389425 11389462 -130881982 + (CA)n Simple_repeat Simple_repeat 2 38 0 793 267 141 20 chr9 11391780 11392425 -130879019 - L1MB7 LINE L1 -7 6155 5419 3633 220 64 3 chr9 11392428 11393493 -130877951 + L1MA9 LINE L1 3205 4334 -1812 6506 83 28 23 chr9 11393517 11394443 -130877001 - L1PA7 LINE L1 -4 6150 5226 30 59 0 0 chr9 11394455 11394506 -130876938 + AT_rich Low_complexity Low_complexity 1 51 0 513 147 20 0 chr9 11394545 11394647 -130876797 - L1MB4 LINE L1 0 6180 6077 4090 207 48 17 chr9 11394691 11396230 -130875214 + L1MA9 LINE L1 4326 5927 -385 2280 106 3 0 chr9 11396233 11396536 -130874908 - AluSx SINE Alu -8 304 1 272 326 7 50 chr9 11396779 11396835 -130874609 + L2 LINE L2 1773 1830 -1484 1849 166 0 3 chr9 11396835 11397137 -130874307 - AluSx SINE Alu -11 301 1 272 326 7 50 chr9 11397137 11397221 -130874223 + L2 LINE L2 1830 1907 -1407 1182 200 9 9 chr9 11397312 11397532 -130873912 + AluJo SINE Alu 1 220 -92 248 189 0 0 chr9 11397532 11397585 -130873859 + FAM SINE Alu 127 179 0 609 219 175 32 chr9 11398308 11398646 -130872798 + L1ME2 LINE L1 5765 6150 -14 909 144 17 58 chr9 11399293 11399466 -130871978 - FRAM SINE Alu -13 163 1 767 158 25 0 chr9 11400553 11400673 -130870771 - FLAM_C SINE Alu -20 123 1 2214 120 0 7 chr9 11400724 11401024 -130870420 + AluSx SINE Alu 1 298 -14 1933 123 42 7 chr9 11401087 11401371 -130870073 + AluSx SINE Alu 9 302 -10 647 256 106 45 chr9 11401424 11401670 -130869774 - MIR SINE MIR -1 261 1 372 354 101 13 chr9 11401674 11401911 -130869533 + L2 LINE L2 2807 3064 -208 192 346 37 12 chr9 11401995 11402076 -130869368 + L2 LINE L2 3190 3272 0 1376 174 27 15 chr9 11402573 11402915 -130868529 + Tigger3(Golem) DNA MER2_type 48 3029 0 425 255 47 65 chr9 11403191 11403364 -130868080 - MIR SINE MIR -70 138 8 2504 78 3 0 chr9 11403394 11403703 -130867741 + AluSp SINE Alu 2 311 -2 5975 77 5 2 chr9 11404900 11405701 -130865743 + L1PA7 LINE L1 5341 6143 -11 326 299 36 28 chr9 11405922 11406173 -130865271 + L1M4 LINE L1 3875 4127 -2019 457 317 67 18 chr9 11406667 11406831 -130864613 + MIR3 SINE MIR 30 201 -7 1753 189 42 3 chr9 11406881 11407215 -130864229 - MER7A DNA MER2_type 0 346 2 1113 170 13 45 chr9 11407878 11408041 -130863403 - MER20 DNA MER1_type -2 217 61 2067 122 24 10 chr9 11408041 11408335 -130863109 + AluSx SINE Alu 1 298 -14 1113 170 13 45 chr9 11408335 11408395 -130863049 - MER20 DNA MER1_type -158 61 1 305 339 36 9 chr9 11410456 11410568 -130860876 + L1ME LINE L1 3 117 -5953 360 304 132 67 chr9 11411544 11411886 -130859558 + L1M2 LINE L1 611 974 -5875 347 265 145 8 chr9 11412727 11412844 -130858600 + MIR3 SINE MIR 30 162 -46 198 329 13 25 chr9 11413941 11414020 -130857424 + L2 LINE L2 3004 3081 -232 958 128 20 13 chr9 11414134 11414283 -130857161 - AluJo SINE Alu -159 153 4 1547 104 5 0 chr9 11414306 11414518 -130856926 + AluSg1 SINE Alu 1 213 -96 2498 51 0 0 chr9 11414518 11414810 -130856634 + AluSc SINE Alu 1 293 -16 577 75 25 0 chr9 11414810 11414890 -130856554 + AluSg1 SINE Alu 205 286 -26 389 250 36 0 chr9 11414897 11414981 -130856463 + L2 LINE L2 3203 3289 -24 181 360 30 30 chr9 11419251 11419351 -130852093 + MER5A DNA MER1_type 69 168 -21 21 0 0 0 chr9 11419647 11419668 -130851776 + AT_rich Low_complexity Low_complexity 1 21 0 214 247 14 27 chr9 11420507 11420580 -130850864 + T-rich Low_complexity Low_complexity 6 77 0 675 233 7 20 chr9 11420995 11421145 -130850299 + MER5A DNA MER1_type 5 152 -37 359 217 12 12 chr9 11421255 11421338 -130850106 - MLT1K LTR MaLR -338 250 168 495 0 0 0 chr9 11421398 11421453 -130849991 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2172 98 0 16 chr9 11422340 11422645 -130848799 - AluSq SINE Alu -13 300 1 261 0 0 0 chr9 11423070 11423099 -130848345 + (TA)n Simple_repeat Simple_repeat 1 29 0 2189 98 0 0 chr9 11423099 11423376 -130848068 - AluSp SINE Alu -7 306 30 476 152 0 0 chr9 11424128 11424194 -130847250 - AluJo SINE Alu -120 192 127 1693 158 50 4 chr9 11424204 11424364 -130847080 - AluJb SINE Alu -20 292 112 186 43 0 0 chr9 11424364 11424387 -130847057 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1693 158 50 4 chr9 11424387 11424505 -130846939 - AluJb SINE Alu -200 112 1 1993 90 14 31 chr9 11424777 11425067 -130846377 + AluY SINE Alu 1 285 -26 775 215 108 0 chr9 11425166 11425380 -130846064 - L1ME2 LINE L1 -10 6154 5918 1097 209 5 5 chr9 11425430 11425631 -130845813 - AluJo SINE Alu -92 220 20 239 213 150 0 chr9 11425646 11425726 -130845718 - L1ME2 LINE L1 -279 5885 5794 215 341 111 14 chr9 11425726 11425934 -130845510 + L2 LINE L2 1742 1969 -1345 233 315 143 19 chr9 11425934 11426150 -130845294 + L2 LINE L2 2328 2570 -744 194 348 11 11 chr9 11426302 11426391 -130845053 - MIR SINE MIR -63 145 57 2179 137 0 0 chr9 11427453 11427746 -130843698 + AluSx SINE Alu 3 295 -17 1416 188 72 51 chr9 11428006 11428299 -130843145 - AluJo SINE Alu -13 299 1 309 312 115 13 chr9 11428500 11428657 -130842787 + MIR SINE MIR 80 252 -10 445 287 44 48 chr9 11428658 11428923 -130842521 - L1ME2 LINE L1 -456 5665 5443 662 179 0 0 chr9 11428946 11429058 -130842386 - AluJb SINE Alu -81 231 120 340 287 41 26 chr9 11429172 11429367 -130842077 + L1MA9 LINE L1 5987 6184 -128 26 0 0 0 chr9 11429382 11429408 -130842036 + AT_rich Low_complexity Low_complexity 1 26 0 304 374 39 0 chr9 11429524 11429679 -130841765 - MIR SINE MIR -82 180 20 30 93 0 0 chr9 11430003 11430089 -130841355 + AT_rich Low_complexity Low_complexity 1 86 0 193 128 43 0 chr9 11430118 11430165 -130841279 + (TA)n Simple_repeat Simple_repeat 2 50 0 353 341 17 34 chr9 11430766 11430942 -130840502 + HAL1b LINE L1 330 502 -846 22 35 0 0 chr9 11431082 11431111 -130840333 + AT_rich Low_complexity Low_complexity 1 29 0 1325 171 98 15 chr9 11431284 11431558 -130839886 + AluSx SINE Alu 1 297 -15 373 181 21 0 chr9 11431558 11431652 -130839792 + GA-rich Low_complexity Low_complexity 1 96 0 31 26 0 0 chr9 11431848 11431886 -130839558 + AT_rich Low_complexity Low_complexity 1 38 0 415 228 87 0 chr9 11432928 11433020 -130838424 - MIR SINE MIR -78 184 85 195 169 43 26 chr9 11433455 11433505 -130837939 - MIR SINE MIR -57 151 105 181 171 0 49 chr9 11433658 11433699 -130837745 + MIR SINE MIR 39 77 -131 196 128 77 26 chr9 11434512 11434551 -130836893 + L2 LINE L2 3230 3270 -2 331 284 127 22 chr9 11434597 11434731 -130836713 - MIR SINE MIR -70 192 45 258 32 0 0 chr9 11434948 11434979 -130836465 + (TG)n Simple_repeat Simple_repeat 1 31 0 1367 94 5 11 chr9 11435080 11435271 -130836173 + AluY SINE Alu 111 300 -11 2474 60 0 0 chr9 11435406 11435704 -130835740 + AluY SINE Alu 4 301 -10 412 196 143 58 chr9 11435715 11435779 -130835665 + L2 LINE L2 3109 3166 -147 695 206 0 22 chr9 11435779 11435915 -130835529 - FLAM_A SINE Alu 0 133 1 412 196 143 58 chr9 11435915 11436039 -130835405 + L2 LINE L2 3166 3313 0 977 161 39 39 chr9 11436732 11436912 -130834532 + MER20 DNA MER1_type 40 219 0 1660 178 7 26 chr9 11437429 11437733 -130833711 - AluJo SINE Alu -14 298 1 880 188 48 0 chr9 11437761 11437926 -130833518 + AluJb SINE Alu 127 299 -13 1170 237 16 0 chr9 11438065 11438318 -130833126 - MER58 DNA MER1_type -2163 257 1 27 29 0 0 chr9 11438822 11438856 -130832588 + AT_rich Low_complexity Low_complexity 1 34 0 2334 88 0 3 chr9 11438947 11439243 -130832201 + AluSx SINE Alu 1 295 -17 1771 174 0 20 chr9 11439369 11439668 -130831776 + AluJo SINE Alu 1 293 -19 202 271 172 16 chr9 11440183 11440305 -130831139 - MIR3 SINE MIR -62 146 6 248 333 26 26 chr9 11440622 11440739 -130830705 + L2 LINE L2 3134 3250 -22 383 338 69 61 chr9 11441080 11441441 -130830003 - L2 LINE L2 -12 3260 2897 431 244 61 61 chr9 11441617 11441748 -130829696 - MER20 DNA MER1_type -88 131 1 27 0 0 26 chr9 11441819 11441837 -130829607 + AT_rich Low_complexity Low_complexity 1 18 -19 3158 69 16 5 chr9 11441837 11442284 -130829160 + L1PA7 LINE L1 5700 6151 -3 27 0 0 26 chr9 11442284 11442303 -130829141 + AT_rich Low_complexity Low_complexity 18 37 0 278 360 205 5 chr9 11442423 11442623 -130828821 + MIR SINE MIR 5 244 -18 25 31 0 0 chr9 11443080 11443112 -130828332 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr9 11443858 11443899 -130827545 + AT_rich Low_complexity Low_complexity 1 41 0 358 306 49 35 chr9 11445774 11445918 -130825526 - L2 LINE L2 0 3313 3168 189 197 155 28 chr9 11446492 11446563 -130824881 - L2 LINE L2 -4 3268 3189 21 36 0 0 chr9 11446851 11446879 -130824565 + AT_rich Low_complexity Low_complexity 1 28 0 6799 74 6 0 chr9 11447365 11448635 -130822809 + L1PA8 LINE L1 4893 6171 -1 212 410 38 0 chr9 11448798 11448903 -130822541 + MIR SINE MIR 52 160 -102 231 88 0 0 chr9 11449199 11449233 -130822211 + (TA)n Simple_repeat Simple_repeat 2 35 0 1093 176 19 37 chr9 11450060 11450106 -130821338 + AluJb SINE Alu 85 130 -182 312 27 0 0 chr9 11450106 11450143 -130821301 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1093 176 19 37 chr9 11450143 11450312 -130821132 + AluJb SINE Alu 130 296 -16 26 64 0 0 chr9 11451096 11451143 -130820301 + AT_rich Low_complexity Low_complexity 1 47 0 378 250 82 41 chr9 11451595 11451791 -130819653 + L1MC5 LINE L1 7726 7929 -32 205 167 0 0 chr9 11452075 11452111 -130819333 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr9 11452202 11452224 -130819220 + AT_rich Low_complexity Low_complexity 1 22 0 250 263 21 21 chr9 11452468 11452563 -130818881 + A-rich Low_complexity Low_complexity 5 99 0 2269 64 0 0 chr9 11452567 11452893 -130818551 + AluY SINE Alu 1 326 0 4976 185 31 24 chr9 11452905 11454548 -130816896 + L1PB3 LINE L1 4143 5803 -351 180 77 0 0 chr9 11454548 11454574 -130816870 + (CA)n Simple_repeat Simple_repeat 2 27 0 4976 185 31 24 chr9 11454574 11454920 -130816524 + L1PB3 LINE L1 5803 6145 -9 * 5283 183 39 5 chr9 11454919 11456302 -130815142 - L1M1 LINE L1 -705 7019 5606 372 258 0 0 chr9 11456322 11456411 -130815033 - L1M1 LINE L1 -2759 4806 4718 * 3837 118 17 0 chr9 11456401 11457030 -130814414 - L1P LINE L1 -732 5422 4781 3010 198 22 14 chr9 11457021 11458068 -130813376 - L1M1 LINE L1 -3233 4332 3274 * 1558 117 0 25 chr9 11458071 11458311 -130813133 + L1PA8A LINE L1 5884 6117 -14 9334 194 19 41 chr9 11458332 11458444 -130813000 - L1M1 LINE L1 -5687 1878 1765 369 0 0 0 chr9 11458444 11458485 -130812959 + (TC)n Simple_repeat Simple_repeat 2 42 0 9334 194 19 41 chr9 11458485 11458563 -130812881 - L1M1 LINE L1 -5800 1765 1687 2464 70 0 0 chr9 11458563 11458865 -130812579 + AluY SINE Alu 1 302 -9 9334 194 19 41 chr9 11458865 11460571 -130810873 - L1M1 LINE L1 -5878 1687 22 415 301 17 46 chr9 11461471 11461644 -130809800 + L2 LINE L2 3146 3313 0 6794 73 8 2 chr9 11462193 11463339 -130808105 - L1PA7 LINE L1 -2 6152 5004 4862 110 7 1 chr9 11463339 11464082 -130807362 + L1PA7 LINE L1 4250 4996 -1150 219 289 91 25 chr9 11464894 11465015 -130806429 - MIR SINE MIR -46 216 88 21 0 0 0 chr9 11465192 11465213 -130806231 + AT_rich Low_complexity Low_complexity 1 21 0 211 293 0 0 chr9 11466016 11466074 -130805370 - MIR SINE MIR -21 241 184 27 29 0 0 chr9 11466492 11466526 -130804918 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr9 11466866 11466898 -130804546 + AT_rich Low_complexity Low_complexity 1 32 0 2450 125 0 0 chr9 11466979 11467426 -130804018 - L1P4 LINE L1 -558 5608 5159 2031 156 17 3 chr9 11467426 11467784 -130803660 + L1PA16 LINE L1 5793 6156 -10 352 311 42 17 chr9 11467839 11467958 -130803486 + L2 LINE L2 3149 3270 -2 2736 0 0 7 chr9 11469229 11469532 -130801912 + AluYa5 SINE Alu 1 301 -10 587 76 0 0 chr9 11469713 11469792 -130801652 - L1PA8 LINE L1 -224 5948 5870 25 51 0 0 chr9 11470356 11470395 -130801049 + AT_rich Low_complexity Low_complexity 1 39 0 6000 145 35 5 chr9 11470889 11471980 -130799464 - L1MA2 LINE L1 0 6304 5184 577 257 22 34 chr9 11472315 11472494 -130798950 - MER5B DNA MER1_type -1 177 1 22 0 0 0 chr9 11472761 11472783 -130798661 + AT_rich Low_complexity Low_complexity 1 22 0 202 291 8 94 chr9 11473303 11473430 -130798014 - L3 LINE CR1 -1 1576 1461 183 42 0 0 chr9 11473671 11473695 -130797749 + (A)n Simple_repeat Simple_repeat 1 24 0 640 297 28 73 chr9 11474045 11474312 -130797132 - L2 LINE L2 -2 3311 3060 2548 52 0 0 chr9 11474312 11474619 -130796825 + AluY SINE Alu 1 307 -4 640 297 28 73 chr9 11474619 11474678 -130796766 - L2 LINE L2 -253 3060 3000 390 295 3 48 chr9 11475109 11475274 -130796170 - MIR SINE MIR -65 143 19 1392 202 50 106 chr9 11476688 11476917 -130794527 - L1MD3 LINE L1 -1 7994 7754 1218 87 49 0 chr9 11476917 11477102 -130794342 + L1MA3 LINE L1 6112 6305 0 1392 202 50 106 chr9 11477102 11477392 -130794052 - L1MD3 LINE L1 -241 7754 7504 1210 35 0 0 chr9 11477392 11477537 -130793907 - L1P LINE L1 -1969 4177 4033 8876 54 7 0 chr9 11477537 11479433 -130792011 + L1PA5 LINE L1 4253 6153 -1 378 278 28 9 chr9 11479453 11479561 -130791883 - L1MD3 LINE L1 -482 7513 7404 2618 244 77 112 chr9 11479562 11479944 -130791500 - L1MD3 LINE L1 -718 7277 6883 312 27 0 0 chr9 11479944 11479981 -130791463 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 2618 244 77 112 chr9 11479981 11481053 -130790391 - L1MD3 LINE L1 -1112 6883 5775 2295 178 29 2 chr9 11481053 11481502 -130789942 - L1MA4 LINE L1 -6 6294 5834 2618 244 77 112 chr9 11481502 11481898 -130789546 - L1MD3 LINE L1 -2220 5775 5491 1796 143 0 41 chr9 11481898 11482191 -130789253 - AluSg SINE Alu -29 281 1 2618 244 77 112 chr9 11482191 11482246 -130789198 - L1MD3 LINE L1 -2504 5491 5436 243 0 0 0 chr9 11482330 11482357 -130789087 + (TG)n Simple_repeat Simple_repeat 2 28 0 249 300 0 0 chr9 11482373 11482463 -130788981 + L1MC4 LINE L1 6614 6703 -1339 243 152 0 0 chr9 11482483 11482529 -130788915 - LTR66 LTR ERVL -171 439 394 241 152 0 0 chr9 11482489 11482535 -130788909 + LTR66 LTR ERVL 394 439 -171 * 183 42 0 0 chr9 11483601 11483625 -130787819 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 249 33 0 0 chr9 11483650 11483680 -130787764 + (TG)n Simple_repeat Simple_repeat 1 30 0 782 260 48 18 chr9 11484012 11484348 -130787096 + MLT1I LTR MaLR 6 405 -4 23 54 0 0 chr9 11484732 11484769 -130786675 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr9 11484924 11484964 -130786480 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr9 11486019 11486061 -130785383 + AT_rich Low_complexity Low_complexity 1 42 0 4902 200 22 7 chr9 11486061 11487987 -130783457 - L1MB1 LINE L1 -6 6162 4209 236 234 13 13 chr9 11488073 11488150 -130783294 + (TA)n Simple_repeat Simple_repeat 1 77 0 2406 68 0 0 chr9 11489013 11489309 -130782135 - AluY SINE Alu -15 296 1 23 0 0 0 chr9 11489317 11489340 -130782104 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr9 11489735 11489760 -130781684 + (A)n Simple_repeat Simple_repeat 1 25 0 13268 151 25 29 chr9 11490046 11492452 -130778992 + Tigger1 DNA MER2_type 24 2418 0 24 67 0 0 chr9 11493305 11493350 -130778094 + AT_rich Low_complexity Low_complexity 1 45 0 219 88 0 0 chr9 11494067 11494101 -130777343 + (TA)n Simple_repeat Simple_repeat 1 34 0 363 121 0 0 chr9 11494104 11494162 -130777282 + (GA)n Simple_repeat Simple_repeat 2 59 0 648 276 26 49 chr9 11494369 11494633 -130776811 - MLT1B LTR MaLR -4 386 129 21 36 0 0 chr9 11496105 11496133 -130775311 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 11496205 11496235 -130775209 + (TG)n Simple_repeat Simple_repeat 2 31 0 231 250 80 11 chr9 11496300 11496388 -130775056 + Charlie2 DNA MER1_type 173 266 -2596 783 250 14 10 chr9 11496393 11496601 -130774843 - MER3 DNA MER1_type 0 209 1 404 274 94 18 chr9 11496660 11496989 -130774455 + Charlie2 DNA MER1_type 2478 2831 -31 563 273 105 43 chr9 11498687 11498896 -130772548 + MIR SINE MIR 13 234 -28 4368 66 2 0 chr9 11499645 11500208 -130771236 + L1PA7 LINE L1 5591 6154 0 2538 84 11 0 chr9 11500208 11500551 -130770893 + L1PA8 LINE L1 5815 6165 -7 1228 264 53 57 chr9 11500944 11501432 -130770012 + L1MC4 LINE L1 6745 7232 -810 1981 146 0 0 chr9 11501432 11501727 -130769717 - AluSx SINE Alu -17 295 1 1228 264 53 57 chr9 11501727 11501780 -130769664 + L1MC4 LINE L1 7232 7284 -758 375 273 1 10 chr9 11502353 11502465 -130768979 + L1MC4 LINE L1 7224 7396 -473 233 29 29 0 chr9 11502919 11502953 -130768491 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 294 97 43 21 chr9 11503039 11503132 -130768312 + (TA)n Simple_repeat Simple_repeat 1 95 0 1517 191 62 76 chr9 11503380 11503803 -130767641 + MSTB1 LTR MaLR 16 432 0 21 0 0 0 chr9 11504068 11504089 -130767355 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 11504228 11504249 -130767195 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr9 11504450 11504483 -130766961 + AT_rich Low_complexity Low_complexity 1 33 0 31 0 0 0 chr9 11504854 11504885 -130766559 + AT_rich Low_complexity Low_complexity 1 31 0 180 360 30 30 chr9 11506573 11506673 -130764771 + MER5A DNA MER1_type 69 168 -21 21 0 0 0 chr9 11506969 11506990 -130764454 + AT_rich Low_complexity Low_complexity 1 21 0 214 247 14 27 chr9 11507829 11507902 -130763542 + T-rich Low_complexity Low_complexity 6 77 0 659 233 7 20 chr9 11508314 11508464 -130762980 + MER5A DNA MER1_type 5 152 -37 368 283 104 40 chr9 11508574 11508717 -130762727 - MLT1K LTR MaLR -338 250 93 531 0 0 0 chr9 11508717 11508776 -130762668 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 368 283 104 40 chr9 11508776 11508805 -130762639 - MLT1K LTR MaLR -495 93 67 2028 137 0 0 chr9 11509663 11509962 -130761482 - AluSx SINE Alu -13 299 1 1333 224 34 31 chr9 11509974 11510390 -130761054 + LTR52 LTR ERVL 3 419 -2 1775 157 10 7 chr9 11510504 11510803 -130760641 - AluSx SINE Alu -10 302 3 23 54 0 0 chr9 11512010 11512047 -130759397 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr9 11512074 11512126 -130759318 + AT_rich Low_complexity Low_complexity 1 52 0 1347 112 4 13 chr9 11513198 11513518 -130757926 - AluSp SINE Alu -15 298 11 602 227 0 0 chr9 11513530 11513662 -130757782 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr9 11513755 11513792 -130757652 + AT_rich Low_complexity Low_complexity 1 37 0 432 82 0 0 chr9 11513957 11514018 -130757426 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 36 0 0 chr9 11516969 11516997 -130754447 + AT_rich Low_complexity Low_complexity 1 28 0 200 143 24 0 chr9 11518163 11518205 -130753239 + (TA)n Simple_repeat Simple_repeat 1 43 0 453 99 4 0 chr9 11520759 11520829 -130750615 - L1PA16 LINE L1 -1 6155 6084 600 305 106 7 chr9 11520830 11521112 -130750332 - LTR16C LTR ERVL -5 486 177 1486 215 0 16 chr9 11521529 11521841 -130749603 + AluJo SINE Alu 1 307 -5 1329 220 87 32 chr9 11521874 11522220 -130749224 + MLT1A1 LTR MaLR 1 365 0 2386 67 0 6 chr9 11525124 11525437 -130746007 - AluY SINE Alu 0 311 1 350 305 69 93 chr9 11526454 11526818 -130744626 + L1ME4a LINE L1 5530 5884 -237 229 227 15 36 chr9 11527850 11527937 -130743507 + CT-rich Low_complexity Low_complexity 1 134 0 558 271 40 13 chr9 11528375 11528526 -130742918 + MER45A DNA AcHobo 1 155 -23 248 170 75 0 chr9 11529007 11529060 -130742384 + MIR SINE MIR 69 125 -137 * 277 276 138 46 chr9 11529045 11529241 -130742203 + L2 LINE L2 3100 3313 0 335 222 172 0 chr9 11529799 11529898 -130741546 - MER3 DNA MER1_type -13 196 81 7587 22 1 7 chr9 11530029 11531055 -130740389 + L1PA3 LINE L1 5135 6155 0 781 226 0 6 chr9 11531223 11531387 -130740057 - MER3 DNA MER1_type -46 163 1 213 272 154 62 chr9 11531586 11531781 -130739663 + MIR SINE MIR 1 213 -49 262 320 0 0 chr9 11531949 11532024 -130739420 + L2 LINE L2 3235 3309 -4 252 277 85 0 chr9 11532201 11532295 -130739149 + MIR3 SINE MIR 100 201 -7 240 335 61 30 chr9 11533618 11533782 -130737662 + MLT1K LTR MaLR 160 328 -260 22 0 0 0 chr9 11534038 11534060 -130737384 + AT_rich Low_complexity Low_complexity 1 22 0 219 167 24 0 chr9 11534115 11534157 -130737287 + (TTG)n Simple_repeat Simple_repeat 2 44 0 195 42 0 0 chr9 11534308 11534332 -130737112 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1364 183 22 51 chr9 11534481 11534792 -130736652 - AluJb SINE Alu -10 302 1 21 71 0 0 chr9 11535718 11535760 -130735684 + AT_rich Low_complexity Low_complexity 1 42 0 202 263 26 13 chr9 11536290 11536366 -130735078 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 723 303 87 16 chr9 11536479 11536915 -130734529 - L1ME3A LINE L1 -225 5945 5479 462 271 94 39 chr9 11537027 11537388 -130734056 - L1ME3A LINE L1 -856 5290 4910 186 49 49 24 chr9 11538394 11538435 -130733009 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5450 27 0 0 chr9 11538446 11539085 -130732359 - L1PA4 LINE L1 -3 6152 5514 4533 39 5 0 chr9 11539085 11539756 -130731688 + L1PA4 LINE L1 4827 5499 -656 25 0 0 0 chr9 11539890 11539915 -130731529 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr9 11539983 11540010 -130731434 + (TC)n Simple_repeat Simple_repeat 2 28 0 234 105 0 0 chr9 11541038 11541076 -130730368 + (CA)n Simple_repeat Simple_repeat 1 38 0 347 269 67 37 chr9 11541934 11542068 -130729376 + MIR SINE MIR 6 143 -119 1997 149 3 20 chr9 11542130 11542473 -130728971 - MER1B DNA MER1_type 0 337 1 1303 159 10 0 chr9 11543970 11544177 -130727267 + L1PA13 LINE L1 1 209 -6578 637 136 0 0 chr9 11544322 11544433 -130727011 + L1PA8 LINE L1 6022 6171 -1 216 97 0 0 chr9 11544675 11544706 -130726738 + (TG)n Simple_repeat Simple_repeat 2 32 0 185 237 68 17 chr9 11544928 11544987 -130726457 + MIR SINE MIR 85 146 -62 243 141 31 62 chr9 11545273 11545337 -130726107 + LTR66 LTR ERVL 402 463 -147 218 313 0 0 chr9 11546230 11546297 -130725147 + CT-rich Low_complexity Low_complexity 2 68 0 719 238 18 0 chr9 11547976 11548144 -130723300 + MLT1D LTR MaLR 335 505 0 2262 100 13 0 chr9 11548388 11548687 -130722757 - AluSx SINE Alu -9 303 1 21 0 0 0 chr9 11548833 11548854 -130722590 + AT_rich Low_complexity Low_complexity 1 21 0 841 109 7 43 chr9 11549197 11549335 -130722109 - L1PA16 LINE L1 -1 6165 6033 189 0 0 0 chr9 11549338 11549359 -130722085 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1420 111 5 0 chr9 11549369 11549601 -130721843 - L1PA8 LINE L1 0 6172 5955 947 85 0 8 chr9 11549601 11549730 -130721714 + L1PA8 LINE L1 5796 5923 -208 * 4591 128 46 7 chr9 11549725 11550483 -130720961 - L1PA16 LINE L1 -125 6041 5254 21 0 0 0 chr9 11551164 11551185 -130720259 + AT_rich Low_complexity Low_complexity 1 21 0 698 332 12 16 chr9 11551456 11551712 -130719732 + MIR SINE MIR 2 256 -6 2243 50 0 84 chr9 11553932 11554255 -130717189 - AluY SINE Alu -15 296 1 207 100 0 0 chr9 11554660 11554690 -130716754 + (A)n Simple_repeat Simple_repeat 1 30 0 26 64 0 0 chr9 11555675 11555722 -130715722 + AT_rich Low_complexity Low_complexity 1 47 0 229 89 44 0 chr9 11556182 11556227 -130715217 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr9 11557931 11557952 -130713492 + AT_rich Low_complexity Low_complexity 1 21 0 264 30 0 0 chr9 11558905 11558938 -130712506 + (CA)n Simple_repeat Simple_repeat 2 34 0 446 284 46 46 chr9 11559220 11559438 -130712006 + L2 LINE L2 3000 3217 -96 21 71 0 0 chr9 11560386 11560428 -130711016 + AT_rich Low_complexity Low_complexity 1 42 0 252 253 113 27 chr9 11560785 11560801 -130710643 - L1MA10 LINE L1 -3 6331 6316 1281 211 64 36 chr9 11560801 11561189 -130710255 - L1ME2 LINE L1 -8 6156 5758 39 0 0 0 chr9 11561369 11561408 -130710036 + AT_rich Low_complexity Low_complexity 1 39 0 226 211 14 56 chr9 11561544 11561615 -130709829 + MLT1J LTR MaLR 3 70 -472 519 237 137 80 chr9 11562298 11562547 -130708897 + MLT1F1 LTR MaLR 278 565 -2 230 250 0 0 chr9 11563036 11563088 -130708356 + LTR30 LTR ERV1 1 52 -670 621 180 41 95 chr9 11563088 11563353 -130708091 + LTR12 LTR ERV1 55 258 -456 248 271 8 78 chr9 11563353 11563482 -130707962 + LTR30 LTR ERV1 524 643 -79 707 100 0 0 chr9 11563484 11563584 -130707860 + LTR12 LTR ERV1 615 714 0 421 255 11 0 chr9 11563711 11563805 -130707639 - MER5A DNA MER1_type -86 103 9 32 0 0 0 chr9 11566121 11566153 -130705291 + AT_rich Low_complexity Low_complexity 1 32 0 216 325 81 31 chr9 11566549 11566709 -130704735 - MIR SINE MIR -58 204 37 21 36 0 0 chr9 11567051 11567079 -130704365 + AT_rich Low_complexity Low_complexity 1 28 0 183 123 0 53 chr9 11567548 11567605 -130703839 + (TA)n Simple_repeat Simple_repeat 2 55 0 259 316 73 37 chr9 11569002 11569138 -130702306 + MIR3 SINE MIR 17 157 -51 466 16 32 0 chr9 11569148 11569211 -130702233 + (TG)n Simple_repeat Simple_repeat 2 66 0 392 291 7 43 chr9 11569404 11569545 -130701899 + MLT1J LTR MaLR 24 159 -352 28 0 0 0 chr9 11571597 11571625 -130699819 + AT_rich Low_complexity Low_complexity 1 28 0 182 255 0 0 chr9 11572069 11572116 -130699328 + MER5C DNA MER1_type 159 205 -119 821 227 29 0 chr9 11574023 11574195 -130697249 + MIR SINE MIR 86 262 0 21 0 0 0 chr9 11574935 11574956 -130696488 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 11577681 11577711 -130693733 + AT_rich Low_complexity Low_complexity 1 30 0 252 239 56 0 chr9 11578520 11578591 -130692853 + MIR3 SINE MIR 120 194 -14 23 0 0 0 chr9 11578604 11578627 -130692817 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 11582686 11582710 -130688734 + (A)n Simple_repeat Simple_repeat 1 24 0 392 297 21 102 chr9 11583173 11583456 -130687988 - L1M2 LINE L1 -5720 1129 870 28 29 0 0 chr9 11583575 11583610 -130687834 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr9 11583653 11583684 -130687760 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr9 11583922 11583942 -130687502 + (TTA)n Simple_repeat Simple_repeat 2 21 0 205 182 0 0 chr9 11585106 11585139 -130686305 + polypyrimidine Low_complexity Low_complexity 2 34 0 451 269 44 76 chr9 11587350 11587599 -130683845 + LTR33 LTR ERVL 1 241 -280 1680 233 22 80 chr9 11587997 11588585 -130682859 + MLT2B3 LTR ERVL 1 554 0 1932 125 24 0 chr9 11588665 11588952 -130682492 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr9 11589379 11589403 -130682041 + AT_rich Low_complexity Low_complexity 1 24 0 1374 192 43 14 chr9 11589628 11589909 -130681535 - AluJb SINE Alu -23 289 1 372 286 62 50 chr9 11589910 11590071 -130681373 - MIR SINE MIR -89 173 11 21 57 0 0 chr9 11590717 11590752 -130680692 + AT_rich Low_complexity Low_complexity 1 35 0 2015 122 10 0 chr9 11591382 11591678 -130679766 - AluSg SINE Alu -11 299 1 43 56 0 0 chr9 11592692 11592763 -130678681 + AT_rich Low_complexity Low_complexity 1 71 0 2577 151 9 14 chr9 11593139 11593569 -130677875 - MSTA LTR MaLR 0 428 1 6791 194 61 0 chr9 11593569 11594851 -130676593 - MSTA-int LTR MaLR 0 1651 292 341 359 23 8 chr9 11597066 11597197 -130674247 + MIR SINE MIR 2 134 -128 302 232 172 10 chr9 11597242 11597341 -130674103 + MIR SINE MIR 114 228 -34 218 347 163 0 chr9 11598525 11598623 -130672821 + MIR SINE MIR 75 188 -74 22 70 0 0 chr9 11598832 11598875 -130672569 + AT_rich Low_complexity Low_complexity 1 43 0 304 272 64 56 chr9 11599152 11599277 -130672167 + MIR SINE MIR 64 189 -73 22 0 0 0 chr9 11599398 11599420 -130672024 + AT_rich Low_complexity Low_complexity 1 22 0 248 211 39 102 chr9 11599995 11600123 -130671321 + MLT1L LTR MaLR 492 611 -4 23 0 0 0 chr9 11600163 11600186 -130671258 + AT_rich Low_complexity Low_complexity 1 23 0 210 143 0 0 chr9 11600460 11600495 -130670949 + (CA)n Simple_repeat Simple_repeat 2 36 0 222 381 17 8 chr9 11600804 11600922 -130670522 - MIR3 SINE MIR 0 208 90 2102 113 0 0 chr9 11601040 11601349 -130670095 + AluSx SINE Alu 1 309 0 256 254 0 15 chr9 11602396 11602463 -130668981 - MLT1K LTR MaLR -18 570 505 261 0 0 0 chr9 11602560 11602589 -130668855 + (A)n Simple_repeat Simple_repeat 1 29 0 364 313 61 0 chr9 11603737 11603884 -130667560 - MIR SINE MIR -16 246 91 27 0 0 0 chr9 11604258 11604285 -130667159 + AT_rich Low_complexity Low_complexity 1 27 0 560 287 37 53 chr9 11604299 11604599 -130666845 + LTR16B LTR ERVL 11 305 -159 2316 81 7 3 chr9 11604816 11605126 -130666318 + AluY SINE Alu 1 311 0 279 287 121 67 chr9 11605164 11605792 -130665652 - L1M4 LINE L1 -1088 5058 4397 255 61 0 0 chr9 11607170 11607203 -130664241 + (TG)n Simple_repeat Simple_repeat 2 34 0 358 286 48 24 chr9 11607222 11607348 -130664096 - MIR SINE MIR -78 184 56 360 200 40 0 chr9 11607460 11607535 -130663909 - L2 LINE L2 0 3313 3236 261 372 84 5 chr9 11607678 11607869 -130663575 - L2 LINE L2 -358 2956 2751 1208 251 48 59 chr9 11608260 11608755 -130662689 + MLT1D LTR MaLR 1 490 -15 234 289 109 55 chr9 11608767 11608895 -130662549 + L2 LINE L2 3177 3311 -2 666 373 90 9 chr9 11608903 11609453 -130661991 + L2 LINE L2 2716 3309 -4 849 214 42 33 chr9 11610226 11610352 -130661092 - MER34 LTR ERV1 0 542 412 2012 144 129 28 chr9 11610352 11610740 -130660704 - MSTA LTR MaLR -1 427 1 849 214 42 33 chr9 11610740 11610828 -130660616 - MER34 LTR ERV1 -130 412 326 857 240 72 12 chr9 11610860 11611110 -130660334 - MER34 LTR ERV1 -277 265 1 306 0 0 0 chr9 11611356 11611390 -130660054 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1188 48 0 0 chr9 11611390 11611536 -130659908 - L1PA5 LINE L1 -18 6136 5991 259 341 148 28 chr9 11611810 11612027 -130659417 - MIR SINE MIR -1 261 19 373 313 7 21 chr9 11613480 11613624 -130657820 - MIR SINE MIR -51 211 70 293 301 26 26 chr9 11615365 11615478 -130655966 - MIR SINE MIR -60 202 90 252 302 12 12 chr9 11616098 11616184 -130655260 + (TA)n Simple_repeat Simple_repeat 1 86 0 22 70 0 0 chr9 11617841 11617884 -130653560 + AT_rich Low_complexity Low_complexity 1 43 0 259 309 95 0 chr9 11617986 11618070 -130653374 + MIR SINE MIR 41 132 -76 1363 196 21 25 chr9 11618191 11618476 -130652968 + AluJo SINE Alu 1 284 -28 380 316 26 0 chr9 11619781 11619895 -130651549 - L2 LINE L2 0 3313 3197 331 346 13 6 chr9 11620611 11620767 -130650677 - L1MC4a LINE L1 -472 7336 7180 8373 229 28 82 chr9 11620930 11623638 -130647806 + L1M2 LINE L1 1 2564 -4285 10886 79 26 6 chr9 11723644 11725922 -130545522 + L1PA4 LINE L1 3849 6154 -1 303 210 61 31 chr9 11726054 11726186 -130545258 - L1MC4a LINE L1 -1289 6507 6382 1154 276 58 11 chr9 11726195 11726575 -130544869 + L1MCc LINE L1 19 416 -6007 203 103 26 0 chr9 11726576 11726615 -130544829 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 186 43 0 0 chr9 11726623 11726646 -130544798 + (GA)n Simple_repeat Simple_repeat 2 24 0 389 348 11 28 chr9 11727515 11727693 -130543751 - MER5A DNA MER1_type -6 183 9 44 46 0 0 chr9 11727840 11727905 -130543539 + AT_rich Low_complexity Low_complexity 1 65 0 382 294 62 56 chr9 11728049 11728209 -130543235 + MIR SINE MIR 28 188 -74 467 355 82 38 chr9 11728387 11728753 -130542691 + L2 LINE L2 2582 2963 -351 275 365 69 13 chr9 11728875 11729034 -130542410 + L2 LINE L2 3104 3271 -1 257 319 0 0 chr9 11729636 11729708 -130541736 - L2 LINE L2 -9 3263 3192 388 300 119 0 chr9 11730346 11730506 -130540938 - MIR SINE MIR -69 193 15 267 333 69 38 chr9 11730913 11731072 -130540372 + L3 LINE CR1 1400 1563 -14 2016 148 0 0 chr9 11732888 11733192 -130538252 + AluSx SINE Alu 1 304 -8 268 132 0 0 chr9 11734407 11734445 -130536999 - THE1B LTR MaLR 0 428 391 620 160 0 0 chr9 11734447 11734553 -130536891 + AluSg/x SINE Alu 203 308 -2 2129 120 37 3 chr9 11734569 11734894 -130536550 - THE1B LTR MaLR -28 336 1 2149 154 76 5 chr9 11735386 11735808 -130535636 - L1MA4 LINE L1 -1 6299 5848 292 379 47 18 chr9 11736794 11736963 -130534481 + LTR16A LTR ERVL 1 174 -276 440 261 18 18 chr9 11737075 11737240 -130534204 + MER115 DNA AcHobo 505 669 -24 1011 159 43 0 chr9 11738337 11738500 -130532944 + AluSg/x SINE Alu 122 291 -21 5999 90 2 18 chr9 11738532 11739417 -130532027 - L1PA7 LINE L1 -846 5300 4430 6342 72 2 0 chr9 11739417 11740252 -130531192 + L1PA7 LINE L1 5317 6153 -1 1714 84 0 4 chr9 11740274 11740500 -130530944 + AluY SINE Alu 27 251 -60 315 300 12 0 chr9 11741000 11741080 -130530364 + MIR SINE MIR 2 82 -180 24 53 0 0 chr9 11741127 11741165 -130530279 + AT_rich Low_complexity Low_complexity 1 38 0 251 300 14 0 chr9 11741372 11741442 -130530002 + MIR SINE MIR 173 243 -19 1859 158 0 16 chr9 11742528 11742839 -130528605 + AluSx SINE Alu 3 308 -4 371 279 67 36 chr9 11742950 11743115 -130528329 + MER5A DNA MER1_type 4 173 -16 344 246 0 123 chr9 11743282 11743404 -130528040 - MER5B DNA MER1_type -71 107 1 1186 244 154 60 chr9 11743468 11743981 -130527463 + MLT1E2 LTR MaLR 1 565 -61 315 0 0 0 chr9 11743981 11744016 -130527428 + (TG)n Simple_repeat Simple_repeat 2 36 0 302 0 26 0 chr9 11744052 11744090 -130527354 + (TG)n Simple_repeat Simple_repeat 2 40 0 882 121 161 15 chr9 11744121 11744320 -130527124 - L1MA3 LINE L1 -1 6304 6077 3844 71 4 0 chr9 11744437 11744944 -130526500 + L1PA7 LINE L1 5643 6151 -3 427 267 141 7 chr9 11745120 11745255 -130526189 - MIR SINE MIR -10 252 100 186 295 85 62 chr9 11745290 11745419 -130526025 - MIR SINE MIR -74 188 57 444 19 0 0 chr9 11746156 11746209 -130525235 + (GA)n Simple_repeat Simple_repeat 2 54 0 5553 40 3 0 chr9 11746755 11747425 -130524019 - L1PA4 LINE L1 -2 6153 5482 9836 32 0 2 chr9 11747425 11748618 -130522826 + L1P LINE L1 3213 4402 -1744 1362 204 11 15 chr9 11748627 11748892 -130522552 - AluJo SINE Alu -22 290 27 264 296 64 54 chr9 11748926 11749206 -130522238 + L1MC/D LINE L1 5607 5889 -1919 416 280 91 88 chr9 11749227 11749591 -130521853 - MER93b LTR ERV1 0 373 9 26 0 0 0 chr9 11749595 11749621 -130521823 + AT_rich Low_complexity Low_complexity 1 26 0 229 295 124 23 chr9 11749725 11749854 -130521590 - MIR SINE MIR -120 142 1 204 226 0 0 chr9 11749956 11750009 -130521435 + A-rich Low_complexity Low_complexity 1 53 0 2666 176 44 21 chr9 11752131 11752919 -130518525 + L1PA16 LINE L1 4699 5506 -660 1288 144 5 5 chr9 11752919 11753127 -130518317 - L1PA16 LINE L1 -283 5883 5676 1062 124 0 0 chr9 11753145 11753298 -130518146 + L1PA16 LINE L1 5495 5647 -519 1581 128 152 3 chr9 11753400 11753723 -130517721 + L1PA16 LINE L1 5813 6179 0 2501 25 0 0 chr9 11753851 11754135 -130517309 + AluY SINE Alu 24 307 -4 313 288 161 0 chr9 11754793 11754911 -130516533 + L2 LINE L2 3136 3272 0 405 54 0 0 chr9 11755316 11755372 -130516072 + (CA)n Simple_repeat Simple_repeat 1 56 0 1803 153 27 7 chr9 11756985 11757280 -130514164 - AluSx SINE Alu -11 301 1 1140 219 124 22 chr9 11758220 11758630 -130512814 - L1ME3A LINE L1 -8 6231 5780 906 114 0 0 chr9 11758631 11758754 -130512690 + AluSc SINE Alu 166 288 -21 231 114 0 0 chr9 11758754 11758789 -130512655 + (GGGAGA)n Simple_repeat Simple_repeat 2 36 0 1341 156 0 41 chr9 11758802 11759046 -130512398 + AluJb SINE Alu 79 312 0 702 266 41 12 chr9 11759046 11759290 -130512154 - L1ME3A LINE L1 -463 5776 5526 523 206 79 52 chr9 11759344 11759633 -130511811 - L1ME3A LINE L1 -681 5552 5253 2879 13 0 0 chr9 11759633 11759947 -130511497 - AluYb8 SINE Alu -4 314 1 523 206 79 52 chr9 11759947 11760028 -130511416 - L1ME3A LINE L1 -980 5253 5176 4042 55 0 2 chr9 11760029 11760537 -130510907 - L1PA7 LINE L1 -12 6142 5636 479 48 0 0 chr9 11760537 11760599 -130510845 + L1P LINE L1 3577 3638 -2508 1253 248 142 41 chr9 11760897 11761389 -130510055 + MLT1F LTR MaLR 1 542 0 987 254 104 73 chr9 11761402 11762374 -130509070 - L1ME3A LINE L1 -1304 4911 3910 21 57 0 0 chr9 11762376 11762411 -130509033 + AT_rich Low_complexity Low_complexity 1 35 0 2002 147 0 0 chr9 11762571 11762878 -130508566 + AluSx SINE Alu 3 309 -3 180 111 0 0 chr9 11762885 11762912 -130508532 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 809 257 172 67 chr9 11762912 11764795 -130506649 - L1MEc LINE L1 -2300 3915 1869 2166 232 106 13 chr9 11765035 11765147 -130506297 - L1MA5 LINE L1 -25 6275 6175 312 27 0 0 chr9 11765147 11765184 -130506260 + (TG)n Simple_repeat Simple_repeat 2 38 0 2166 232 106 13 chr9 11765184 11766260 -130505184 - L1MA5 LINE L1 -125 6175 4955 6712 44 1 1 chr9 11766260 11767081 -130504363 + L1PA5 LINE L1 5332 6152 -2 365 222 14 0 chr9 11767109 11767181 -130504263 - L1MA5 LINE L1 -1179 4967 4895 3020 217 6 42 chr9 11767185 11767991 -130503453 + L1 LINE L1 3595 4371 -1775 2123 128 7 3 chr9 11768321 11768626 -130502818 - AluSg SINE Alu -4 306 1 22 0 0 0 chr9 11768956 11768978 -130502466 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr9 11769177 11769205 -130502239 + AT_rich Low_complexity Low_complexity 1 28 0 353 376 6 19 chr9 11769775 11769937 -130501507 + L3 LINE CR1 1388 1547 -30 1281 304 20 38 chr9 11769943 11770393 -130501051 - LTR33 LTR ERVL -18 503 62 400 392 73 18 chr9 11771812 11772242 -130499202 + L2 LINE L2 2613 3068 -245 348 176 0 0 chr9 11772320 11772388 -130499056 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 207 0 0 0 chr9 11773427 11773450 -130497994 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 501 355 56 4 chr9 11774552 11774850 -130496594 - HERV16 LTR ERVL -2023 2973 2684 41323 62 4 2 chr9 11774869 11781000 -130490444 + L1PA5 LINE L1 11 6147 -7 274 380 52 10 chr9 11781024 11781411 -130490033 - HERV16 LTR ERVL -2819 2666 2264 618 382 16 13 chr9 11781467 11781839 -130489605 - HERV16 LTR ERVL -3487 2277 1905 356 391 37 14 chr9 11782041 11782335 -130489109 - HERV16 LTR ERVL -3412 1584 1284 2290 31 41 34 chr9 11783297 11783590 -130487854 - AluY SINE Alu -16 295 1 496 329 43 29 chr9 11783864 11784141 -130487303 - LTR16C LTR ERVL -18 473 193 319 322 85 43 chr9 11784337 11785286 -130486158 + L1M4 LINE L1 3553 4541 -1605 * 4423 47 0 9 chr9 11785272 11785286 -130486158 + L1PA4 LINE L1 5352 5365 -790 2181 35 0 0 chr9 11785286 11785545 -130485899 - L1PA5 LINE L1 -1 6153 5895 4423 47 0 9 chr9 11785545 11786079 -130485365 + L1PA5 LINE L1 5365 5895 -260 248 270 48 24 chr9 11786076 11786202 -130485242 + L1M4 LINE L1 4532 4660 -1486 * 5897 211 110 36 chr9 11786775 11788283 -130483161 + MER52A LTR ERV1 136 1755 0 237 265 15 0 chr9 11788292 11788360 -130483084 + L1M LINE L1 5349 5417 -747 3753 214 34 70 chr9 11788614 11789993 -130481451 - L1MB1 LINE L1 -1 5991 4611 389 207 12 0 chr9 11789993 11790075 -130481369 - MER52A LTR ERV1 -460 1295 1213 3753 214 34 70 chr9 11790075 11790409 -130481035 - L1MB1 LINE L1 -1381 4611 4266 2131 225 19 73 chr9 11790420 11790997 -130480447 - MLT2B3 LTR ERVL -8 546 1 14782 158 23 27 chr9 11790999 11793578 -130477866 - HERVL-B3 LTR ERVL -2 5652 3063 4467 64 0 10 chr9 11793578 11794156 -130477288 - L1PA7 LINE L1 0 6154 5583 14782 158 23 27 chr9 11794156 11794259 -130477185 - HERVL-B3 LTR ERVL -2591 3063 2961 1833 144 27 56 chr9 11794259 11794634 -130476810 + THE1B LTR MaLR 1 364 0 14782 158 23 27 chr9 11794634 11794966 -130476478 - HERVL-B3 LTR ERVL -2693 2961 2548 3052 257 76 48 chr9 11794972 11795391 -130476053 - L1MB1 LINE L1 -2813 3157 2751 2149 109 0 17 chr9 11795391 11795706 -130475738 - AluSx SINE Alu 0 312 1 3052 257 76 48 chr9 11795706 11796513 -130474931 - L1MB1 LINE L1 -3219 2751 1968 6584 155 23 17 chr9 11796513 11797732 -130473712 + Tigger3b DNA MER2_type 5 1230 -1 3052 257 76 48 chr9 11797732 11799489 -130471955 - L1MB1 LINE L1 -4002 1968 444 876 314 81 14 chr9 11799513 11799860 -130471584 - L1MB1 LINE L1 -5520 371 2 1532 193 4 0 chr9 11799866 11800130 -130471314 - AluJo SINE Alu -12 300 36 24 53 0 0 chr9 11800344 11800382 -130471062 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr9 11800419 11800442 -130471002 + AT_rich Low_complexity Low_complexity 1 23 0 262 312 48 64 chr9 11800609 11800859 -130470585 - HERVL LTR ERVL -4383 1271 1026 22 0 0 0 chr9 11800924 11800946 -130470498 + AT_rich Low_complexity Low_complexity 1 22 0 325 361 68 21 chr9 11801336 11801527 -130469917 - L2 LINE L2 -469 2845 2646 1537 204 37 30 chr9 11801961 11802392 -130469052 + L1MB2 LINE L1 5738 6171 0 430 239 165 37 chr9 11802648 11802836 -130468608 - L1ME2 LINE L1 0 6164 5953 1738 184 7 3 chr9 11803065 11803364 -130468080 + AluJb SINE Alu 13 312 0 276 100 0 0 chr9 11803375 11803415 -130468029 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 224 350 25 67 chr9 11803441 11803561 -130467883 - MER5A DNA MER1_type 0 189 75 361 282 98 23 chr9 11803617 11803791 -130467653 - MER5A DNA MER1_type 0 189 3 207 133 0 0 chr9 11804793 11804838 -130466606 + (A)n Simple_repeat Simple_repeat 1 45 0 1764 173 10 10 chr9 11805779 11806091 -130465353 - AluJb SINE Alu 0 312 1 1943 147 53 11 chr9 11806673 11807033 -130464411 + THE1C LTR MaLR 1 375 0 294 29 0 0 chr9 11809381 11809416 -130462028 + (CA)n Simple_repeat Simple_repeat 2 36 0 284 331 127 0 chr9 11809633 11809775 -130461669 + L2 LINE L2 2696 2855 -459 303 224 60 43 chr9 11810877 11810993 -130460451 + L1M4 LINE L1 2816 2933 -3213 1101 253 29 3 chr9 11811009 11811321 -130460123 - L1 LINE L1 -3318 2828 2509 525 248 21 0 chr9 11811328 11811469 -130459975 - L1M4 LINE L1 -1549 4597 4454 * 5690 121 18 14 chr9 11811465 11811738 -130459706 + L1PA16 LINE L1 5215 5485 -681 450 0 0 0 chr9 11811738 11811788 -130459656 + (TA)n Simple_repeat Simple_repeat 1 50 0 5690 121 18 14 chr9 11811788 11812081 -130459363 + L1PA16 LINE L1 5485 5775 -391 1320 195 31 69 chr9 11812081 11812399 -130459045 + AluJb SINE Alu 1 306 -6 5690 121 18 14 chr9 11812399 11812774 -130458670 + L1PA16 LINE L1 5775 6154 -12 189 74 0 0 chr9 11812887 11812914 -130458530 + (CA)n Simple_repeat Simple_repeat 2 28 0 255 200 0 0 chr9 11812958 11813013 -130458431 - L1MC4 LINE L1 -1340 6702 6648 1857 225 34 135 chr9 11813037 11813504 -130457940 - MLT2B3 LTR ERVL -26 498 75 431 143 0 0 chr9 11813600 11813670 -130457774 - MLT2B3 LTR ERVL -483 71 2 1391 237 56 31 chr9 11813675 11814194 -130457250 - L1M4 LINE L1 -1701 4445 3914 689 231 19 61 chr9 11814248 11814365 -130457079 + L1 LINE L1 2626 2732 -3414 1638 199 7 7 chr9 11814365 11814652 -130456792 - AluJb SINE Alu -23 289 3 689 231 19 61 chr9 11814652 11814746 -130456698 + L1 LINE L1 2732 2828 -3318 189 74 0 0 chr9 11814787 11814814 -130456630 + (CA)n Simple_repeat Simple_repeat 2 28 0 1654 154 96 9 chr9 11814845 11815190 -130456254 - THE1C LTR MaLR 0 375 1 8378 134 106 6 chr9 11815193 11816615 -130454829 - THE1C-int LTR MaLR -17 1563 1 1603 141 73 62 chr9 11816615 11816984 -130454460 - THE1C LTR MaLR 0 375 3 658 188 34 20 chr9 11816986 11817094 -130454350 - L1M4 LINE L1 -2289 3857 3745 2889 210 9 4 chr9 11817094 11817641 -130453803 - MER44D DNA MER2_type 0 605 1 658 188 34 20 chr9 11817641 11817681 -130453763 - L1M4 LINE L1 -2401 3745 3707 1750 24 9 0 chr9 11818639 11818850 -130452594 - L1PA4 LINE L1 0 6155 5943 961 242 50 0 chr9 11818890 11819109 -130452335 + MIR SINE MIR 3 232 -30 510 361 38 0 chr9 11819118 11819301 -130452143 + LTR16A LTR ERVL 5 194 -256 318 234 65 56 chr9 11820364 11820471 -130450973 + L3b LINE CR1 1329 1436 -147 2147 107 0 3 chr9 11820511 11820800 -130450644 + AluSq SINE Alu 1 288 -25 358 258 0 21 chr9 11820803 11820896 -130450548 + L1MC4 LINE L1 6614 6704 -1338 441 0 0 0 chr9 11820954 11821003 -130450441 + (TG)n Simple_repeat Simple_repeat 2 50 0 23 68 0 0 chr9 11821135 11821179 -130450265 + AT_rich Low_complexity Low_complexity 1 44 0 1909 146 44 0 chr9 11821430 11821725 -130449719 - AluSp SINE Alu -5 308 1 3281 99 18 16 chr9 11821766 11822259 -130449185 - L1PA14 LINE L1 -4 6157 5664 13948 214 22 20 chr9 11822260 11824691 -130446753 - L1P LINE L1 -882 5264 2823 2857 10 0 0 chr9 11824691 11825002 -130446442 - AluY SINE Alu 0 311 1 13948 214 22 20 chr9 11825002 11825880 -130445564 - L1P LINE L1 -3323 2823 1948 201 250 25 0 chr9 11826271 11826311 -130445133 + MIR3 SINE MIR 114 154 -54 23 0 0 0 chr9 11827182 11827205 -130444239 + AT_rich Low_complexity Low_complexity 1 23 0 2184 114 3 3 chr9 11827395 11827694 -130443750 - AluSq SINE Alu -12 301 3 198 385 31 43 chr9 11827767 11827928 -130443516 - L2 LINE L2 0 3272 3114 235 368 39 44 chr9 11828396 11828578 -130442866 + MIR SINE MIR 70 250 -12 1449 160 53 153 chr9 11830805 11831356 -130440088 + LTR54B LTR ERV1 1 496 -2 4897 124 28 35 chr9 11832359 11833340 -130438104 + pTR5 LTR ERV1 741 2025 -413 301 276 10 0 chr9 11833340 11833438 -130438006 + LTR30 LTR ERV1 544 642 -80 1233 163 34 5 chr9 11833445 11833654 -130437790 + pTR5 LTR ERV1 175 389 -2049 2173 91 0 30 chr9 11833785 11834083 -130437361 + AluY SINE Alu 5 293 -18 6708 140 33 25 chr9 11834990 11835744 -130435700 + Tigger3b DNA MER2_type 1 769 -2259 2235 92 14 0 chr9 11835744 11836036 -130435408 - AluY SINE Alu -13 298 3 6708 140 33 25 chr9 11836036 11836503 -130434941 + Tigger3b DNA MER2_type 769 1231 0 314 297 26 58 chr9 11836755 11836910 -130434534 - MIR SINE MIR -1 261 112 248 139 93 0 chr9 11836959 11837002 -130434442 + MLT1G1 LTR MaLR 1 47 -548 518 198 85 41 chr9 11837022 11837271 -130434173 + MLT1G1 LTR MaLR 194 567 0 282 329 33 26 chr9 11837271 11837423 -130434021 + MLT1G1-int LTR MaLR 1 153 -1218 3991 250 54 64 chr9 11837481 11838662 -130432782 - L1MEc LINE L1 -853 5362 4207 1799 126 33 0 chr9 11838662 11838932 -130432512 - AluSg SINE Alu -6 304 26 3991 250 54 64 chr9 11838932 11839708 -130431736 - L1MEc LINE L1 -2008 4207 3425 1837 255 90 13 chr9 11839709 11840231 -130431213 - MLT1F1 LTR MaLR -5 562 1 2446 265 79 15 chr9 11840264 11840405 -130431039 - L1MEc LINE L1 -2827 3388 3257 1213 234 31 0 chr9 11840405 11840695 -130430749 - AluJo SINE Alu -13 299 1 2446 265 79 15 chr9 11840695 11842182 -130429262 - L1MEc LINE L1 -2958 3257 1703 348 0 58 0 chr9 11842261 11842313 -130429131 + (TTA)n Simple_repeat Simple_repeat 3 57 0 7463 21 3 0 chr9 11842313 11843732 -130427712 - L1PA3 LINE L1 -18 6137 4708 685 245 83 0 chr9 11843853 11844106 -130427338 - L1MC3 LINE L1 -1 7784 7511 21101 30 2 0 chr9 11845782 11848341 -130423103 - L1PA3 LINE L1 -784 5362 2800 6806 19 0 0 chr9 11848341 11849155 -130422289 + L1PA3 LINE L1 5354 6167 0 290 291 58 12 chr9 11849527 11849613 -130421831 + MIR SINE MIR 19 108 -154 808 213 6 22 chr9 11849916 11850099 -130421345 + AluJb SINE Alu 132 311 -1 287 227 13 0 chr9 11850707 11850782 -130420662 + (TA)n Simple_repeat Simple_repeat 2 77 0 346 273 84 0 chr9 11851952 11852095 -130419349 + LTR16A1 LTR ERVL 299 453 -4 277 272 114 26 chr9 11852183 11852297 -130419147 + HAL1 LINE L1 258 381 -2126 707 296 100 34 chr9 11852642 11853320 -130418124 + HAL1 LINE L1 817 1539 -968 384 313 40 7 chr9 11853342 11853492 -130417952 + HAL1 LINE L1 1619 1773 -734 656 288 123 48 chr9 11853494 11854001 -130417443 - L2 LINE L2 -98 3215 2648 3219 43 0 0 chr9 11854001 11854396 -130417048 + L1PA4 LINE L1 5758 6152 -3 656 288 123 48 chr9 11854396 11854432 -130417012 - L2 LINE L2 -665 2648 2616 1413 153 16 28 chr9 11854894 11855143 -130416301 - L1PB3 LINE L1 0 6154 5909 211 220 138 88 chr9 11855974 11856133 -130415311 - L2 LINE L2 -37 3276 3110 23 0 0 0 chr9 11856250 11856273 -130415171 + AT_rich Low_complexity Low_complexity 1 23 0 1850 262 82 39 chr9 11856547 11857991 -130413453 + L1ME LINE L1 10 1505 -4575 306 286 165 9 chr9 11857991 11858215 -130413229 + L1ME LINE L1 3522 3780 -2300 2127 255 71 38 chr9 11858326 11859596 -130411848 + L1ME LINE L1 4298 5600 -500 28 29 0 0 chr9 11862601 11862636 -130408808 + AT_rich Low_complexity Low_complexity 1 35 0 269 235 12 0 chr9 11862923 11863008 -130408436 + (CATA)n Simple_repeat Simple_repeat 3 88 0 332 278 111 12 chr9 11864854 11864985 -130406459 + MIR SINE MIR 11 151 -57 5548 116 8 0 chr9 11864989 11865816 -130405628 + L1PA13 LINE L1 5310 6143 -20 29 47 0 0 chr9 11865859 11865902 -130405542 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr9 11866156 11866180 -130405264 + (CA)n Simple_repeat Simple_repeat 1 24 0 394 243 98 75 chr9 11866747 11866920 -130404524 + MER5B DNA MER1_type 2 178 0 262 257 14 0 chr9 11867028 11867102 -130404342 + (CA)n Simple_repeat Simple_repeat 1 75 0 2602 39 0 7 chr9 11867166 11867474 -130403970 + AluY SINE Alu 1 306 -5 199 286 57 29 chr9 11867670 11867740 -130403704 + MIR SINE MIR 82 153 -55 1643 147 55 68 chr9 11868219 11868599 -130402845 - THE1C LTR MaLR 0 375 1 9533 126 63 6 chr9 11868599 11870094 -130401350 - THE1C-int LTR MaLR 0 1580 1 1510 167 66 74 chr9 11870094 11870472 -130400972 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr9 11870594 11870620 -130400824 + AT_rich Low_complexity Low_complexity 1 26 0 34 42 0 0 chr9 11870924 11870972 -130400472 + AT_rich Low_complexity Low_complexity 1 48 0 261 297 66 0 chr9 11871082 11871173 -130400271 - MIR SINE MIR -62 200 104 22 0 0 0 chr9 11872321 11872343 -130399101 + AT_rich Low_complexity Low_complexity 1 22 0 664 295 71 5 chr9 11872636 11872860 -130398584 + MIR SINE MIR 13 251 -11 416 226 81 24 chr9 11872987 11873111 -130398333 + L2 LINE L2 3183 3313 0 183 304 170 7 chr9 11873432 11873567 -130397877 - MIR SINE MIR -11 251 95 2131 160 38 30 chr9 11873582 11874131 -130397313 - MLT2A2 LTR ERVL 0 554 1 211 304 14 29 chr9 11874577 11874646 -130396798 - L2 LINE L2 -1 3312 3245 1105 221 0 32 chr9 11875297 11875550 -130395894 + L1MC3 LINE L1 6548 6792 -993 241 292 135 22 chr9 11875584 11875673 -130395771 + MIR SINE MIR 32 130 -78 2071 101 6 38 chr9 11876343 11876661 -130394783 - AluSp SINE Alu -1 312 5 2487 77 0 0 chr9 11876768 11877078 -130394366 + AluY SINE Alu 1 310 -1 180 111 0 0 chr9 11877779 11877806 -130393638 + (T)n Simple_repeat Simple_repeat 1 27 0 567 216 69 78 chr9 11879958 11880264 -130391180 - LTR37A LTR ERV1 -12 414 112 598 284 85 6 chr9 11880990 11881166 -130390278 + MIR SINE MIR 70 259 -3 2353 94 139 5 chr9 11881557 11881952 -130389492 + LTR7 LTR ERV1 1 448 -2 14533 111 6 26 chr9 11881954 11884764 -130386680 + HERVH LTR ERV1 1 2995 -4718 877 160 7 0 chr9 11884743 11884893 -130386551 + HERVH LTR ERV1 3140 3290 -4423 * 1598 121 12 0 chr9 11884892 11885132 -130386312 + HERVH LTR ERV1 3500 3742 -3971 7600 126 13 2 chr9 11885139 11886294 -130385150 + HERVH LTR ERV1 3993 5149 -2564 1418 125 19 0 chr9 11886295 11886511 -130384933 + HERVH LTR ERV1 5600 5819 -1894 2374 96 48 13 chr9 11886511 11886888 -130384556 + HERVH LTR ERV1 7324 7713 0 2241 96 152 18 chr9 11886888 11887283 -130384161 + LTR7 LTR ERV1 1 448 -2 635 77 0 22 chr9 11887283 11887374 -130384070 + LTR7 LTR ERV1 354 442 -8 2326 91 0 16 chr9 11887593 11887902 -130383542 - AluY SINE Alu -6 305 2 1540 168 44 24 chr9 11888948 11889246 -130382198 + AluJb SINE Alu 1 304 -8 617 186 8 0 chr9 11889552 11889676 -130381768 + L1MB4 LINE L1 6050 6174 -6 2037 47 3 10 chr9 11889766 11889777 -130381667 + L1PA4 LINE L1 5668 5678 -496 217 49 0 49 chr9 11889777 11889818 -130381626 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2037 47 3 10 chr9 11889818 11890099 -130381345 + L1PA4 LINE L1 5678 5954 -220 270 0 0 0 chr9 11890392 11890422 -130381022 + (TG)n Simple_repeat Simple_repeat 1 30 0 238 265 0 0 chr9 11891773 11891822 -130379622 - L2 LINE L2 -5 3267 3219 3356 129 39 2 chr9 11892264 11892798 -130378646 + MER41C LTR ERV1 1 554 0 905 203 144 13 chr9 11893088 11893324 -130378120 + AluYa8 SINE Alu 44 310 0 283 340 10 0 chr9 11894439 11894536 -130376908 - L2 LINE L2 -19 3294 3197 2278 129 25 8 chr9 11894982 11895338 -130376106 - THE1B LTR MaLR 0 364 3 10908 108 1 32 chr9 11895344 11896967 -130374477 - THE1B-int LTR MaLR -4 1576 5 1109 146 0 16 chr9 11896968 11897153 -130374291 - THE1B LTR MaLR -6 358 177 11153 75 2 6 chr9 11897253 11899574 -130371870 + L1PA5 LINE L1 3848 6151 -3 1047 140 7 4 chr9 11899580 11901133 -130370311 + ALR/Alpha Satellite centromeric 1 1557 -34 1816 101 8 0 chr9 11901233 11901471 -130369973 - AluSq SINE Alu -73 240 1 2060 147 0 0 chr9 11901639 11901939 -130369505 + AluSx SINE Alu 1 300 -12 1799 127 48 4 chr9 11902221 11902489 -130368955 + AluSc SINE Alu 11 290 -19 1734 160 0 17 chr9 11902696 11902983 -130368461 + AluSx SINE Alu 1 282 -30 1636 170 37 0 chr9 11903180 11903474 -130367970 - AluSx SINE Alu 0 305 2 443 113 16 0 chr9 11904241 11904303 -130367141 - AluSg/x SINE Alu -134 176 114 1276 134 0 46 chr9 11904406 11904622 -130366822 + AluSq SINE Alu 95 300 -13 217 119 48 0 chr9 11904635 11904677 -130366767 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2082 113 0 7 chr9 11905333 11905642 -130365802 + AluSg SINE Alu 1 307 0 1082 215 15 5 chr9 11905681 11905886 -130365558 - AluJo SINE Alu -30 282 76 2007 99 11 0 chr9 11905886 11906158 -130365286 - AluSx SINE Alu -35 277 3 650 163 8 16 chr9 11906193 11906316 -130365128 + FLAM_C SINE Alu 2 123 -10 923 100 21 29 chr9 11906332 11906472 -130364972 - AluJb SINE Alu -152 160 22 409 236 0 0 chr9 11906528 11906634 -130364810 - FRAM SINE Alu -8 168 63 301 258 171 69 chr9 11907241 11907458 -130363986 + L1M2 LINE L1 840 1078 -5771 2166 80 3 0 chr9 11907549 11907838 -130363606 + AluSg SINE Alu 1 290 -20 550 157 0 0 chr9 11907920 11908003 -130363441 + AluSg/x SINE Alu 205 287 -23 1329 136 5 5 chr9 11908058 11908264 -130363180 + AluJb SINE Alu 1 206 -106 422 172 46 23 chr9 11908273 11908360 -130363084 - AluJ/FLAM SINE Alu -223 89 1 943 172 108 135 chr9 11908491 11908787 -130362657 - AluJb SINE Alu -12 290 3 242 180 0 0 chr9 11908831 11908881 -130362563 - Alu SINE Alu -3 296 247 769 220 75 0 chr9 11910525 11910711 -130360733 - MER3 DNA MER1_type -1 208 9 462 180 40 30 chr9 11910908 11911008 -130360436 - MER5A DNA MER1_type -83 106 6 299 319 163 0 chr9 11911080 11911221 -130360223 + MIR SINE MIR 20 183 -79 26 0 0 0 chr9 11913012 11913038 -130358406 + AT_rich Low_complexity Low_complexity 1 26 0 3081 60 2 2 chr9 11913144 11913543 -130357901 - L1PA6 LINE L1 -2 6152 5754 2185 95 3 10 chr9 11914106 11914402 -130357042 + AluSp SINE Alu 1 294 -19 22 35 0 0 chr9 11915090 11915119 -130356325 + AT_rich Low_complexity Low_complexity 1 29 0 956 196 138 45 chr9 11915465 11915594 -130355850 + AluJo SINE Alu 1 116 -196 2200 99 24 0 chr9 11915594 11915886 -130355558 + AluSq SINE Alu 1 299 -14 956 196 138 45 chr9 11915886 11915980 -130355464 + AluJo SINE Alu 116 245 -67 491 310 167 58 chr9 11916418 11916541 -130354903 - L2 LINE L2 -10 3262 3154 1124 154 288 3 chr9 11916541 11916826 -130354618 - MER47A DNA MER2_type 0 366 1 491 310 167 58 chr9 11916826 11917607 -130353837 - L2 LINE L2 -118 3154 2228 2304 92 3 0 chr9 11918058 11918363 -130353081 - AluY SINE Alu -5 306 1 228 143 20 41 chr9 11918465 11918514 -130352930 + Alu SINE Alu 121 168 -135 2278 102 0 0 chr9 11918566 11918859 -130352585 - AluSg SINE Alu -17 293 1 1378 162 26 0 chr9 11918860 11919089 -130352355 + MER46A DNA MER2_type 2 236 0 557 203 15 30 chr9 11919660 11919793 -130351651 - FLAM_A SINE Alu 0 133 3 23 54 0 0 chr9 11920149 11920186 -130351258 + AT_rich Low_complexity Low_complexity 1 37 0 2251 92 0 0 chr9 11922031 11922315 -130349129 - AluSx SINE Alu -24 288 5 22 0 0 0 chr9 11923170 11923192 -130348252 + AT_rich Low_complexity Low_complexity 1 22 0 1936 166 0 13 chr9 11923192 11923500 -130347944 + AluJb SINE Alu 1 304 -8 4358 74 16 20 chr9 11923500 11924530 -130346914 - MER11A LTR ERVK 0 1266 1 406 295 45 0 chr9 11925043 11925155 -130346289 + MER5A DNA MER1_type 73 189 0 25 31 0 0 chr9 11926280 11926312 -130345132 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr9 11926753 11926781 -130344663 + AT_rich Low_complexity Low_complexity 1 28 0 650 339 40 49 chr9 11926824 11927252 -130344192 + MER45C DNA AcHobo 1 424 -529 407 300 58 0 chr9 11927249 11927439 -130344005 + MER45B DNA AcHobo 768 968 -72 * 472 211 0 0 chr9 11927441 11927536 -130343908 - MLT1E2 LTR MaLR -480 146 52 2200 103 66 6 chr9 11928187 11928535 -130342909 - MER51B LTR ERV1 -8 369 1 415 129 0 0 chr9 11928537 11928599 -130342845 - MER51B-int LTR ERV1 -1 7815 7754 21 57 0 0 chr9 11928795 11928830 -130342614 + AT_rich Low_complexity Low_complexity 1 35 0 231 133 0 0 chr9 11928830 11928875 -130342569 + (TA)n Simple_repeat Simple_repeat 2 46 0 467 244 91 17 chr9 11934563 11934739 -130336705 - MIR SINE MIR 0 262 74 202 358 15 45 chr9 11935502 11935636 -130335808 - MIR SINE MIR -109 153 24 294 50 0 0 chr9 11935998 11936038 -130335406 + (TC)n Simple_repeat Simple_repeat 1 40 0 1056 349 49 25 chr9 11936280 11936907 -130334537 - L2 LINE L2 -830 2484 1843 200 211 0 0 chr9 11937269 11937307 -130334137 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 739 321 57 46 chr9 11937833 11938394 -130333050 - L2 LINE L2 -1485 1829 1263 24 0 0 0 chr9 11938397 11938421 -130333023 + AT_rich Low_complexity Low_complexity 1 24 0 780 343 102 21 chr9 11938522 11939082 -130332362 + L2 LINE L2 1935 2541 -773 414 298 37 46 chr9 11939082 11939266 -130332178 - MER5B DNA MER1_type -1 177 10 273 398 37 12 chr9 11939357 11939518 -130331926 + L2 LINE L2 2608 2772 -542 571 355 13 4 chr9 11939766 11939994 -130331450 - MIR SINE MIR -2 260 31 5221 159 11 44 chr9 11940050 11940617 -130330827 - L1MA10 LINE L1 0 6334 5750 1582 126 57 4 chr9 11940617 11940864 -130330580 - AluSq SINE Alu -9 304 45 5221 159 11 44 chr9 11940864 11941586 -130329858 - L1MA10 LINE L1 -584 5750 5078 19267 91 9 2 chr9 11941935 11945492 -130325952 - L1PA7 LINE L1 -2 6152 2561 2136 126 0 0 chr9 11946798 11947083 -130324361 + AluSx SINE Alu 1 285 -27 21 0 0 0 chr9 11947083 11947104 -130324340 + AT_rich Low_complexity Low_complexity 1 21 0 297 233 0 0 chr9 11947415 11947475 -130323969 - MER33 DNA MER1_type -222 102 43 2029 135 0 14 chr9 11947626 11947923 -130323521 - AluSp SINE Alu -20 293 1 2107 134 7 0 chr9 11948417 11948722 -130322722 - AluSx SINE Alu -5 307 1 2183 138 0 0 chr9 11949216 11949521 -130321923 - AluSg SINE Alu -5 305 1 1163 141 6 3 chr9 11950393 11954290 -130317154 - ALR/Alpha Satellite centromeric 0 3910 1 1075 157 2 0 chr9 11954390 11955241 -130316203 - ALR/Alpha Satellite centromeric 0 852 1 843 202 26 26 chr9 11955624 11955817 -130315627 + MER46A DNA MER2_type 43 235 -1 610 219 62 12 chr9 11955826 11955986 -130315458 - MIR SINE MIR 0 262 95 191 362 79 31 chr9 11955979 11956106 -130315338 - MIR SINE MIR -57 151 19 * 260 266 13 38 chr9 11956700 11956779 -130314665 + MIR SINE MIR 156 232 -30 288 0 0 0 chr9 11958291 11958323 -130313121 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 424 233 188 7 chr9 11959172 11959311 -130312133 - MER5A DNA MER1_type -5 184 1 3367 215 66 27 chr9 11960225 11961062 -130310382 - L1MC3 LINE L1 -457 7328 6450 1957 159 0 0 chr9 11961062 11961364 -130310080 + AluSg SINE Alu 1 302 -8 3367 215 66 27 chr9 11961364 11961453 -130309991 - L1MC3 LINE L1 -1335 6450 6366 1723 196 0 0 chr9 11961625 11961921 -130309523 + AluJb SINE Alu 1 296 -16 1495 150 9 4 chr9 11962777 11963010 -130308434 + AluSp SINE Alu 1 234 -79 387 140 0 0 chr9 11963010 11963067 -130308377 - AluJ/FLAM SINE Alu -200 102 46 632 307 88 34 chr9 11963151 11963717 -130307727 - L1ME3A LINE L1 -310 5860 5264 642 194 129 48 chr9 11963892 11964140 -130307304 + MER33 DNA MER1_type 57 324 0 21 0 0 0 chr9 11964152 11964173 -130307271 + AT_rich Low_complexity Low_complexity 1 21 0 310 308 128 15 chr9 11964441 11964902 -130306542 - L1ME3A LINE L1 -1371 4775 4263 1517 163 31 7 chr9 11964991 11965285 -130306159 + AluSq SINE Alu 1 301 -12 192 287 0 0 chr9 11965326 11965427 -130306017 + (CAGAC)n Simple_repeat Simple_repeat 5 105 0 303 292 0 0 chr9 11965445 11965613 -130305831 + (CAGAC)n Simple_repeat Simple_repeat 3 170 0 300 270 0 0 chr9 11965702 11965828 -130305616 + (GACTG)n Simple_repeat Simple_repeat 3 128 0 219 224 0 0 chr9 11965840 11965889 -130305555 + (GACTG)n Simple_repeat Simple_repeat 1 49 0 212 211 14 0 chr9 11965890 11965961 -130305483 + (CAGAC)n Simple_repeat Simple_repeat 4 75 0 255 301 0 0 chr9 11965965 11966038 -130305406 + (GACTG)n Simple_repeat Simple_repeat 1 73 0 330 288 0 0 chr9 11966039 11966199 -130305245 + (CAGAC)n Simple_repeat Simple_repeat 4 163 0 402 297 0 0 chr9 11966203 11966321 -130305123 + (GACTG)n Simple_repeat Simple_repeat 3 120 0 285 283 0 0 chr9 11966324 11966476 -130304968 + (CAGAC)n Simple_repeat Simple_repeat 4 155 0 366 282 0 0 chr9 11966508 11966678 -130304766 + (CAGAC)n Simple_repeat Simple_repeat 3 172 0 412 187 7 29 chr9 11966730 11966823 -130304621 - AluJ/FLAM SINE Alu -240 62 1 1614 146 27 8 chr9 11967202 11967462 -130303982 + AluSq SINE Alu 49 313 0 1131 150 10 2 chr9 11967709 11970978 -130300466 + ALR/Alpha Satellite centromeric 1 3297 -4 1442 72 97 5 chr9 11970979 11971186 -130300258 - AluY SINE Alu -19 292 67 1212 136 5 8 chr9 11971192 11973292 -130298152 + ALR/Alpha Satellite centromeric 1 2094 -66 25 0 0 0 chr9 11976505 11976530 -130294914 + AT_rich Low_complexity Low_complexity 1 25 0 397 151 0 0 chr9 11977017 11977103 -130294341 + L1PA12 LINE L1 5932 6017 -151 1910 153 3 0 chr9 11977247 11977555 -130293889 - AluSx SINE Alu -3 309 1 965 336 24 16 chr9 11977592 11978135 -130293309 + L2 LINE L2 2683 3313 0 253 310 35 35 chr9 11978143 11978285 -130293159 + MIR SINE MIR 81 222 -40 21 0 0 0 chr9 11978722 11978743 -130292701 + AT_rich Low_complexity Low_complexity 1 21 0 3570 125 64 8 chr9 11979492 11980100 -130291344 - LTR12 LTR ERV1 0 1797 130 1251 129 5 3 chr9 11981714 11988664 -130282780 - ALR/Alpha Satellite centromeric 0 6961 1 4433 86 21 6 chr9 11988664 11989681 -130281763 - MER11A LTR ERVK 0 1266 1 1263 128 2 11 chr9 11989681 11992571 -130278873 - ALR/Alpha Satellite centromeric 0 2864 1 1286 121 2 1 chr9 11992583 11997914 -130273530 - ALR/Alpha Satellite centromeric 0 5336 1 1041 139 7 0 chr9 11998016 11998294 -130273150 - ALR/Alpha Satellite centromeric -3 279 1 289 241 175 51 chr9 11998850 11998987 -130272457 + MIR3 SINE MIR 29 182 -26 181 363 77 0 chr9 11999617 11999708 -130271736 - MIR SINE MIR 0 262 165 578 280 48 43 chr9 11999709 11999916 -130271528 - L2 LINE L2 -5 3308 3101 1623 177 11 11 chr9 11999931 12000208 -130271236 + AluJb SINE Alu 11 287 -25 22 56 0 0 chr9 12000210 12000246 -130271198 + AT_rich Low_complexity Low_complexity 1 36 0 198 273 26 39 chr9 12000251 12000328 -130271116 - L2 LINE L2 -207 3106 3031 5216 10 2 2 chr9 12000995 12001579 -130269865 + L1PA2 LINE L1 5478 6061 -94 9335 95 24 9 chr9 12001682 12001778 -130269666 - HERVL LTR ERVL -1047 4607 4514 2343 87 0 0 chr9 12001778 12002078 -130269366 - AluY SINE Alu -11 300 1 9335 95 24 9 chr9 12002078 12003252 -130268192 - HERVL LTR ERVL -1140 4514 3319 2402 144 23 0 chr9 12003252 12003605 -130267839 - THE1B LTR MaLR -3 361 1 417 333 73 20 chr9 12004638 12004842 -130266602 - MIR SINE MIR -3 259 45 224 80 120 0 chr9 12005206 12005256 -130266188 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 21 0 0 0 chr9 12005267 12005288 -130266156 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 12005656 12005677 -130265767 + AT_rich Low_complexity Low_complexity 1 21 0 444 269 124 43 chr9 12006097 12006283 -130265161 + MLT1H1 LTR MaLR 7 207 -348 2867 276 77 59 chr9 12006351 12007498 -130263946 - L1MCc LINE L1 -4887 1536 438 186 43 0 0 chr9 12007498 12007521 -130263923 + (TC)n Simple_repeat Simple_repeat 2 24 0 2867 276 77 59 chr9 12007521 12007949 -130263495 - L1MCc LINE L1 -5985 438 19 309 214 65 31 chr9 12007950 12008090 -130263354 + L1MC4a LINE L1 6344 6507 -1289 41173 70 3 4 chr9 12008222 12014366 -130257078 - L1PA4 LINE L1 -1 6154 11 192 40 0 0 chr9 12014384 12014409 -130257035 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2148 101 0 0 chr9 12014413 12014689 -130256755 - AluY SINE Alu -35 276 1 481 303 41 74 chr9 12014812 12015056 -130256388 - MLT1J LTR MaLR -60 451 216 516 359 11 6 chr9 12016352 12016533 -130254911 + MIR SINE MIR 11 192 -70 2606 158 59 9 chr9 12016589 12017031 -130254413 - MLT2C2 LTR ERVL 0 464 1 189 387 0 43 chr9 12018432 12018525 -130252919 + MIR SINE MIR 30 118 -90 2866 99 3 0 chr9 12018616 12018970 -130252474 - THE1A LTR MaLR 0 355 1 12104 107 3 1 chr9 12018971 12020547 -130250897 - THE1A-int LTR MaLR -1 1579 1 2831 102 3 0 chr9 12020547 12020901 -130250543 - THE1A LTR MaLR 0 355 1 327 175 16 0 chr9 12020965 12021028 -130250416 + MIR SINE MIR 86 149 -113 2317 95 3 13 chr9 12021030 12021345 -130250099 + AluSx SINE Alu 1 312 0 276 188 129 47 chr9 12021976 12022061 -130249383 + MLT1A1 LTR MaLR 95 186 -188 371 323 19 38 chr9 12022168 12022326 -130249118 - MIR SINE MIR -30 232 78 1378 199 29 19 chr9 12022465 12022777 -130248667 + MLT1A1 LTR MaLR 1 315 -50 236 314 154 0 chr9 12022816 12022922 -130248522 - MIR SINE MIR -69 139 46 830 251 120 43 chr9 12023103 12023423 -130248021 + MLT1I LTR MaLR 7 362 -47 2184 110 47 65 chr9 12023423 12023805 -130247639 - THE1C LTR MaLR 0 375 1 830 251 120 43 chr9 12023805 12023858 -130247586 + MLT1I LTR MaLR 362 409 0 252 253 107 0 chr9 12024043 12024118 -130247326 - Charlie8 DNA MER1_type -2236 181 99 246 261 81 54 chr9 12024243 12024354 -130247090 + MIR3 SINE MIR 55 168 -40 953 181 15 10 chr9 12025681 12025880 -130245564 + L1MA6 LINE L1 6099 6298 -2 371 367 28 17 chr9 12026040 12026217 -130245227 + MER5A DNA MER1_type 1 179 -10 682 296 29 15 chr9 12026228 12026434 -130245010 - MLT1K LTR MaLR -7 581 373 467 333 73 18 chr9 12026460 12026679 -130244765 - MIR SINE MIR -17 245 15 2136 139 0 13 chr9 12027235 12027544 -130243900 + AluSx SINE Alu 1 305 -7 351 253 119 36 chr9 12027742 12028037 -130243407 + MLT1G LTR MaLR 226 549 0 21 0 0 0 chr9 12028389 12028410 -130243034 + AT_rich Low_complexity Low_complexity 1 21 0 688 293 38 9 chr9 12028410 12028622 -130242822 - MIR SINE MIR -35 227 10 2395 39 0 0 chr9 12028689 12028969 -130242475 - L1P LINE L1 -1772 4374 4095 339 300 112 24 chr9 12029367 12029654 -130241790 + Tigger8 DNA MER2_type 237 548 -118 3212 206 28 84 chr9 12030556 12031582 -130239862 + LTR5 LTR ERVK 1 969 0 403 333 62 1 chr9 12032819 12033002 -130238442 + MIR SINE MIR 19 208 -39 323 103 0 17 chr9 12033794 12033852 -130237592 + (TC)n Simple_repeat Simple_repeat 1 57 0 2974 231 51 26 chr9 12034096 12034896 -130236548 + MER99 DNA DNA 5 824 -4 797 167 68 123 chr9 12035716 12035967 -130235477 - MLT2B1 LTR ERVL 0 520 284 7779 144 56 7 chr9 12035967 12037297 -130234147 - Ricksha DNA DNA -39 3207 1821 1528 135 139 0 chr9 12037295 12037547 -130233897 - Ricksha DNA DNA -2957 289 3 * 1222 211 61 22 chr9 12037550 12037862 -130233582 - MLT2B1 LTR ERVL -196 324 1 7689 98 6 11 chr9 12038087 12039136 -130232308 + HERVL LTR ERVL 4611 5654 0 3723 164 6 30 chr9 12039145 12039853 -130231591 + Tigger1 DNA MER2_type 1440 2130 -288 2096 194 112 7 chr9 12039858 12041452 -130229992 - SATR1 Satellite Satellite -140 1761 1 2038 190 95 30 chr9 12041479 12042509 -130228935 - SATR1 Satellite Satellite -20 1096 1 221 250 11 53 chr9 12042592 12042780 -130228664 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2413 186 111 0 chr9 12042799 12044441 -130227003 + SATR1 Satellite Satellite 1 1823 -411 3247 50 3 0 chr9 12044607 12044985 -130226459 + L1PA4 LINE L1 5774 6152 -3 356 320 82 24 chr9 12045373 12045547 -130225897 + MIR3 SINE MIR 20 207 -1 1843 157 17 3 chr9 12045561 12045855 -130225589 + AluSp SINE Alu 2 299 -14 953 248 216 19 chr9 12046050 12046559 -130224885 - L2 LINE L2 -2 3311 2664 800 130 19 80 chr9 12046562 12046724 -130224720 + AluSg/x SINE Alu 138 289 -21 585 243 64 0 chr9 12046734 12046907 -130224537 - L2 LINE L2 -639 2675 2492 243 205 143 80 chr9 12046973 12047085 -130224359 + L2 LINE L2 3154 3272 0 979 146 31 28 chr9 12047207 12047415 -130224029 - AluSg/x SINE Alu -4 308 145 3362 71 5 5 chr9 12047518 12047941 -130223503 + L1PA6 LINE L1 5732 6154 0 862 180 50 0 chr9 12047941 12048102 -130223342 - THE1C LTR MaLR -206 169 1 26 0 0 0 chr9 12048540 12048566 -130222878 + AT_rich Low_complexity Low_complexity 1 26 0 244 100 100 0 chr9 12049768 12049808 -130221636 + MSTA LTR MaLR 385 428 0 532 284 59 49 chr9 12050002 12050393 -130221051 + L1MDa LINE L1 1525 1919 -4621 384 125 0 0 chr9 12050776 12050840 -130220604 + (CA)n Simple_repeat Simple_repeat 2 65 0 1972 141 0 0 chr9 12051026 12051330 -130220114 - AluSx SINE Alu 0 304 1 818 284 61 68 chr9 12051366 12052784 -130218660 + L1MDa LINE L1 2621 4028 -2512 238 306 24 0 chr9 12052968 12053053 -130218391 + L1MCc LINE L1 113 199 -6224 1392 280 39 2 chr9 12053126 12053583 -130217861 + L1MCc LINE L1 3032 3505 -3436 3780 146 64 40 chr9 12053773 12054528 -130216916 - LTR1 LTR ERV1 0 785 13 1206 62 19 0 chr9 12054836 12054998 -130216446 + L1PA7 LINE L1 5990 6154 0 186 43 0 0 chr9 12055109 12055132 -130216312 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 12055518 12055539 -130215905 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 12055640 12055669 -130215775 + AT_rich Low_complexity Low_complexity 1 29 0 3837 36 0 0 chr9 12055811 12056289 -130215155 + L1P LINE L1 2296 2773 -3373 897 296 154 28 chr9 12056748 12057598 -130213846 + HAL1 LINE L1 817 1773 -734 641 288 123 48 chr9 12057600 12058107 -130213337 - L2 LINE L2 -98 3215 2648 3205 43 0 0 chr9 12058107 12058502 -130212942 + L1PA4 LINE L1 5758 6152 -3 641 288 123 48 chr9 12058502 12058538 -130212906 - L2 LINE L2 -665 2648 2616 1404 153 16 28 chr9 12059000 12059249 -130212195 - L1PB3 LINE L1 0 6154 5909 219 220 138 88 chr9 12060080 12060239 -130211205 - L2 LINE L2 -37 3276 3110 23 0 0 0 chr9 12060356 12060379 -130211065 + AT_rich Low_complexity Low_complexity 1 23 0 1913 262 82 39 chr9 12060653 12062097 -130209347 + L1ME LINE L1 10 1505 -4575 327 286 165 9 chr9 12062097 12062321 -130209123 + L1ME LINE L1 3522 3780 -2300 2202 258 69 46 chr9 12062321 12063702 -130207742 + L1ME LINE L1 4199 5600 -500 28 29 0 0 chr9 12066707 12066742 -130204702 + AT_rich Low_complexity Low_complexity 1 35 0 269 235 12 0 chr9 12067029 12067114 -130204330 + (CATA)n Simple_repeat Simple_repeat 3 88 0 332 278 111 12 chr9 12068960 12069091 -130202353 + MIR SINE MIR 11 151 -57 5555 117 8 0 chr9 12069093 12069922 -130201522 + L1PA13 LINE L1 5308 6143 -20 29 47 0 0 chr9 12069965 12070008 -130201436 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr9 12070262 12070286 -130201158 + (CA)n Simple_repeat Simple_repeat 1 24 0 395 243 98 75 chr9 12070853 12071026 -130200418 + MER5B DNA MER1_type 2 178 0 262 257 14 0 chr9 12071134 12071208 -130200236 + (CA)n Simple_repeat Simple_repeat 1 75 0 2559 39 0 7 chr9 12071272 12071580 -130199864 + AluY SINE Alu 1 306 -5 200 286 57 29 chr9 12071776 12071846 -130199598 + MIR SINE MIR 82 153 -55 1627 147 55 68 chr9 12072325 12072705 -130198739 - THE1C LTR MaLR 0 375 1 9425 126 63 6 chr9 12072705 12074200 -130197244 - THE1C-int LTR MaLR 0 1580 1 1505 167 66 74 chr9 12074200 12074578 -130196866 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr9 12074700 12074726 -130196718 + AT_rich Low_complexity Low_complexity 1 26 0 34 42 0 0 chr9 12075030 12075078 -130196366 + AT_rich Low_complexity Low_complexity 1 48 0 261 297 66 0 chr9 12075188 12075279 -130196165 - MIR SINE MIR -62 200 104 22 0 0 0 chr9 12076427 12076449 -130194995 + AT_rich Low_complexity Low_complexity 1 22 0 673 295 71 5 chr9 12076742 12076966 -130194478 + MIR SINE MIR 13 251 -11 416 226 81 24 chr9 12077093 12077217 -130194227 + L2 LINE L2 3183 3313 0 191 311 170 7 chr9 12077538 12077673 -130193771 - MIR SINE MIR -11 251 95 2116 160 38 30 chr9 12077688 12078237 -130193207 - MLT2A2 LTR ERVL 0 554 1 214 304 14 29 chr9 12078683 12078752 -130192692 - L2 LINE L2 -1 3312 3245 1117 221 0 32 chr9 12079403 12079656 -130191788 + L1MC3 LINE L1 6548 6792 -993 241 292 135 22 chr9 12079690 12079779 -130191665 + MIR SINE MIR 32 130 -78 2041 101 6 38 chr9 12080449 12080767 -130190677 - AluSp SINE Alu -1 312 5 2101 104 3 27 chr9 12080874 12081172 -130190272 + AluSg SINE Alu 1 291 -19 25 0 0 0 chr9 12081199 12081224 -130190220 + AT_rich Low_complexity Low_complexity 1 25 0 2112 114 3 0 chr9 12081472 12081762 -130189682 - AluSq SINE Alu -20 293 3 180 97 0 0 chr9 12081774 12081805 -130189639 + (T)n Simple_repeat Simple_repeat 1 31 0 1724 140 0 23 chr9 12081805 12082070 -130189374 - AluSx SINE Alu -53 259 1 2175 131 33 6 chr9 12082070 12082405 -130189039 - MER41A LTR ERV1 -210 344 1 23 33 0 0 chr9 12083099 12083129 -130188315 + AT_rich Low_complexity Low_complexity 1 30 0 268 217 11 65 chr9 12083134 12083226 -130188218 - L2 LINE L2 -994 2320 2234 502 224 8 75 chr9 12083306 12083329 -130188115 - FLAM_A SINE Alu -177 125 102 1999 122 37 0 chr9 12083329 12083623 -130187821 + AluSp SINE Alu 1 305 -8 502 224 8 75 chr9 12083623 12083733 -130187711 - FLAM_A SINE Alu -200 102 1 1790 127 32 49 chr9 12083890 12084198 -130187246 - AluSx SINE Alu -9 303 1 367 233 134 35 chr9 12084235 12084407 -130187037 - L1MC5 LINE L1 -61 7900 7712 2224 121 0 3 chr9 12084516 12084829 -130186615 - AluSx SINE Alu 0 312 1 21 0 0 0 chr9 12085005 12085026 -130186418 + AT_rich Low_complexity Low_complexity 1 21 0 2035 143 0 3 chr9 12085186 12085493 -130185951 + AluSx SINE Alu 1 306 -6 2228 88 0 0 chr9 12085663 12085985 -130185459 - AluY SINE Alu 0 322 1 33 0 0 0 chr9 12085992 12086025 -130185419 + AT_rich Low_complexity Low_complexity 1 33 0 1216 140 4 1 chr9 12086338 12087913 -130183531 - ALR/Alpha Satellite centromeric 0 1579 1 4338 93 17 4 chr9 12087916 12088927 -130182517 - MER11A LTR ERVK -5 1261 1 1288 134 3 1 chr9 12088907 12094067 -130177377 - ALR/Alpha Satellite centromeric -55 5169 1 * 1220 140 2 4 chr9 12094167 12095389 -130176055 + ALR/Alpha Satellite centromeric 1 1220 -27 1196 133 3 3 chr9 12095402 12097452 -130173992 + ALR/Alpha Satellite centromeric 1 2049 -4 547 141 0 0 chr9 12097452 12097537 -130173907 + AluS SINE Alu 220 304 -8 1300 126 5 3 chr9 12097544 12102597 -130168847 + ALR/Alpha Satellite centromeric 1 5064 0 490 226 0 0 chr9 12103434 12103551 -130167893 - L1MC4 LINE L1 0 8042 7901 1870 110 50 0 chr9 12103614 12103895 -130167549 - AluSx SINE Alu -16 296 2 576 227 148 75 chr9 12103895 12104141 -130167303 - L1MC4 LINE L1 -995 6813 6586 2012 124 10 7 chr9 12104141 12104439 -130167005 - AluSx SINE Alu -13 299 1 576 227 148 75 chr9 12104439 12104861 -130166583 - L1MC4 LINE L1 -1222 6586 6116 * 1004 147 28 6 chr9 12104854 12105031 -130166413 - L1PA16 LINE L1 -34 6132 5952 625 187 89 31 chr9 12105056 12105251 -130166193 - MER33 DNA MER1_type -255 69 1 192 163 0 0 chr9 12105633 12105676 -130165768 + (CA)n Simple_repeat Simple_repeat 2 44 0 1126 205 20 12 chr9 12106454 12106708 -130164736 + Tigger1 DNA MER2_type 2163 2418 0 235 322 11 11 chr9 12108508 12108595 -130162849 + L2 LINE L2 3227 3313 0 2466 49 16 7 chr9 12108792 12109098 -130162346 - AluY SINE Alu -2 309 1 198 103 0 0 chr9 12109485 12109514 -130161930 + (TA)n Simple_repeat Simple_repeat 2 30 0 2027 154 13 34 chr9 12109827 12110209 -130161235 + THE1C LTR MaLR 2 375 0 21 0 0 0 chr9 12111354 12111375 -130160069 + AT_rich Low_complexity Low_complexity 1 21 0 239 316 35 18 chr9 12111535 12111649 -130159795 + MLT1I LTR MaLR 278 393 -16 180 350 80 29 chr9 12112319 12112456 -130158988 + L3 LINE CR1 1425 1568 -9 23 54 0 0 chr9 12112558 12112595 -130158849 + AT_rich Low_complexity Low_complexity 1 37 0 1153 147 10 5 chr9 12112667 12112864 -130158580 + L1PBa LINE L1 3 200 -6663 11404 125 87 72 chr9 12112866 12114188 -130157256 + L1PBa LINE L1 636 1937 -4925 1060 78 0 14 chr9 12114188 12114329 -130157115 - AluY SINE Alu -15 296 158 11404 125 87 72 chr9 12114329 12114703 -130156741 + L1PBa LINE L1 1937 2304 -4558 2386 75 3 7 chr9 12114703 12115010 -130156434 + AluY SINE Alu 2 307 -4 11404 125 87 72 chr9 12115010 12115939 -130155505 + L1PBa LINE L1 2304 3444 -3418 2321 187 106 0 chr9 12115941 12116395 -130155049 + L1PB3 LINE L1 5593 6094 -60 394 32 0 81 chr9 12116405 12116467 -130154977 - L1PA3 LINE L1 0 6155 6099 1957 21 0 0 chr9 12116469 12116705 -130154739 + L1P LINE L1 4987 5222 -924 366 67 0 50 chr9 12116705 12116760 -130154684 + L1PB1 LINE L1 6091 6147 -4 2143 95 60 0 chr9 12117342 12117627 -130153817 - AluSq SINE Alu -11 302 1 1057 244 117 22 chr9 12118637 12118810 -130152634 - L1M4 LINE L1 -1316 4830 4675 2466 129 3 3 chr9 12118810 12119174 -130152270 - THE1B LTR MaLR 0 364 1 1057 244 117 22 chr9 12119174 12119435 -130152009 - L1M4 LINE L1 -1471 4675 4339 11821 35 9 3 chr9 12119435 12121650 -130149794 - L1PA4 LINE L1 -3 6152 3928 1057 244 117 22 chr9 12121650 12121717 -130149727 - L1M4 LINE L1 -1807 4339 4280 201 155 52 0 chr9 12121757 12121815 -130149629 + (TTAA)n Simple_repeat Simple_repeat 4 64 0 273 58 58 0 chr9 12121828 12121880 -130149564 + (TTAA)n Simple_repeat Simple_repeat 3 57 0 424 223 33 25 chr9 12121926 12122047 -130149397 - L1M4 LINE L1 -1922 4224 4103 6028 165 28 5 chr9 12122913 12124343 -130147101 - L1MA3 LINE L1 0 6305 4843 1725 165 51 38 chr9 12124343 12124713 -130146731 - THE1C LTR MaLR 0 375 1 5877 161 24 19 chr9 12124713 12125739 -130145705 - THE1C-int LTR MaLR 0 1580 549 518 269 88 46 chr9 12126740 12127023 -130144421 - L1ME1 LINE L1 -44 6122 5828 461 296 0 0 chr9 12127047 12127199 -130144245 + L1M4 LINE L1 3605 3756 -2390 280 269 113 6 chr9 12127231 12127307 -130144137 + L1M4 LINE L1 3742 3809 -2337 7075 34 2 0 chr9 12127307 12128153 -130143291 + L1PA4 LINE L1 5304 6151 -4 280 269 113 6 chr9 12128153 12128236 -130143208 + L1M4 LINE L1 3809 3918 -2228 366 333 123 4 chr9 12128238 12128481 -130142963 + HAL1 LINE L1 1298 1569 -938 829 298 39 12 chr9 12128706 12129038 -130142406 + HAL1 LINE L1 1550 1890 -617 29 47 0 0 chr9 12129456 12129499 -130141945 + AT_rich Low_complexity Low_complexity 1 43 0 254 326 7 20 chr9 12129858 12130005 -130141439 + CT-rich Low_complexity Low_complexity 3 147 0 2250 89 86 0 chr9 12131060 12131385 -130140059 + THE1A LTR MaLR 3 355 0 11339 105 1 7 chr9 12131385 12132974 -130138470 + THE1A-int LTR MaLR 1 1580 0 2153 107 71 21 chr9 12132976 12133312 -130138132 + THE1A LTR MaLR 3 355 0 22 0 0 0 chr9 12133580 12133602 -130137842 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr9 12133625 12133658 -130137786 + (TG)n Simple_repeat Simple_repeat 2 34 0 189 377 61 0 chr9 12134703 12134817 -130136627 + MIR SINE MIR 20 140 -122 191 167 24 0 chr9 12134861 12134903 -130136541 + (CATA)n Simple_repeat Simple_repeat 3 45 0 237 258 0 0 chr9 12135069 12135099 -130136345 + (CA)n Simple_repeat Simple_repeat 1 30 -36 2225 103 0 0 chr9 12135099 12135381 -130136063 + AluSc SINE Alu 3 284 -25 237 258 0 0 chr9 12135381 12135416 -130136028 + (CA)n Simple_repeat Simple_repeat 29 66 0 23 0 0 0 chr9 12135836 12135859 -130135585 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr9 12136871 12136900 -130134544 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr9 12136977 12137002 -130134442 + AT_rich Low_complexity Low_complexity 1 25 0 189 107 0 0 chr9 12137399 12137427 -130134017 + (TG)n Simple_repeat Simple_repeat 2 29 0 583 269 184 3 chr9 12137664 12137980 -130133464 - Charlie2 DNA MER1_type -19 2843 2471 272 352 0 11 chr9 12138599 12138687 -130132757 + L2 LINE L2 3137 3223 -49 2034 127 3 7 chr9 12138735 12139027 -130132417 + AluSx SINE Alu 9 299 -13 222 139 23 0 chr9 12139760 12139803 -130131641 + (TG)n Simple_repeat Simple_repeat 2 45 0 1251 295 102 27 chr9 12140957 12141739 -130129705 + L2 LINE L2 2467 3304 -9 360 292 56 21 chr9 12141770 12141914 -130129530 - MIR3 SINE MIR -6 202 54 707 296 89 44 chr9 12142295 12142701 -130128743 + L3b LINE CR1 1106 1529 -54 1256 194 131 45 chr9 12143342 12143678 -130127766 - MLT1A1 LTR MaLR 0 365 1 453 355 77 11 chr9 12144388 12144571 -130126873 + MER91A DNA MER1_type 2 196 0 228 248 59 59 chr9 12144585 12144686 -130126758 - HAL1 LINE L1 -14 2493 2393 799 177 96 90 chr9 12144726 12144875 -130126569 - L1MA9 LINE L1 0 6312 6178 365 39 20 0 chr9 12144875 12144926 -130126518 + (TG)n Simple_repeat Simple_repeat 1 52 0 799 177 96 90 chr9 12144926 12145084 -130126360 - L1MA9 LINE L1 -134 6178 6022 322 277 28 14 chr9 12145088 12145229 -130126215 - HAL1 LINE L1 -128 2379 2237 3204 120 16 0 chr9 12145428 12145943 -130125501 - L1MA3 LINE L1 0 6305 5783 11596 181 59 25 chr9 12145945 12147806 -130123638 - L1 LINE L1 -1080 6485 4472 2079 139 0 0 chr9 12147806 12148115 -130123329 - AluSx SINE Alu 0 312 4 11596 181 59 25 chr9 12148115 12149295 -130122149 - L1 LINE L1 -3093 4472 3334 18943 158 35 12 chr9 12151460 12151935 -130119509 - L1 LINE L1 -4219 3346 2883 3438 128 6 4 chr9 12151935 12152445 -130118999 - MER9 LTR ERVK 0 511 1 18943 158 35 12 chr9 12152445 12152795 -130118649 - L1 LINE L1 -4682 2883 2542 2089 137 6 6 chr9 12152795 12153108 -130118336 - AluSq SINE Alu 0 313 1 18943 158 35 12 chr9 12153108 12155542 -130115902 - L1 LINE L1 -5023 2542 12 538 339 13 48 chr9 12155549 12156009 -130115435 - HAL1 LINE L1 -423 2084 1641 440 333 86 17 chr9 12156027 12156261 -130115183 - MIR SINE MIR -9 253 4 237 238 152 19 chr9 12156354 12156564 -130114880 - HAL1 LINE L1 -1241 1266 1029 439 343 131 7 chr9 12156600 12156897 -130114547 - HAL1 LINE L1 -1735 772 439 404 251 118 93 chr9 12156905 12157113 -130114331 - HAL1 LINE L1 -2134 373 153 2269 107 7 0 chr9 12157113 12157421 -130114023 - AluSx SINE Alu -2 310 1 404 251 118 93 chr9 12157421 12157535 -130113909 - HAL1 LINE L1 -2354 153 43 24 0 0 0 chr9 12159315 12159339 -130112105 + AT_rich Low_complexity Low_complexity 1 24 0 267 279 205 31 chr9 12159623 12159784 -130111660 - MER5A DNA MER1_type 0 189 1 629 290 45 77 chr9 12159818 12160170 -130111274 - LTR16C LTR ERVL 0 491 151 23 0 0 0 chr9 12160373 12160396 -130111048 + AT_rich Low_complexity Low_complexity 1 23 0 369 93 0 0 chr9 12161419 12161473 -130109971 + (CA)n Simple_repeat Simple_repeat 2 55 0 272 275 62 12 chr9 12162011 12162091 -130109353 + MIR SINE MIR 173 256 -6 615 295 120 0 chr9 12162195 12162429 -130109015 - MIR SINE MIR 0 262 1 225 0 0 0 chr9 12163068 12163093 -130108351 + (CA)n Simple_repeat Simple_repeat 2 26 0 288 256 13 0 chr9 12164043 12164121 -130107323 + MER116 DNA Mariner 2 80 0 21 0 0 0 chr9 12164432 12164453 -130106991 + AT_rich Low_complexity Low_complexity 1 21 0 1822 163 79 30 chr9 12164605 12165011 -130106433 - MSTB LTR MaLR 0 426 1 8572 185 33 4 chr9 12165019 12166622 -130104822 - MSTB-int LTR MaLR -1 1650 1 2096 195 19 16 chr9 12166622 12167047 -130104397 - MSTB LTR MaLR 0 426 1 11203 41 0 0 chr9 12167409 12168776 -130102668 + L1P LINE L1 3808 5174 -972 3324 261 52 32 chr9 12168776 12170157 -130101287 - L1MEc LINE L1 -2185 4030 2622 1167 259 21 16 chr9 12170273 12170697 -130100747 - L1MEc LINE L1 -3534 2681 2256 394 319 44 54 chr9 12170713 12171030 -130100414 - L1MEc LINE L1 -4352 2044 1731 303 309 21 42 chr9 12171168 12171359 -130100085 - L1MEc LINE L1 -4595 1801 1615 * 2737 195 75 37 chr9 12171340 12172077 -130099367 - L1MD1 LINE L1 0 6242 5478 23 54 0 0 chr9 12172368 12172405 -130099039 + AT_rich Low_complexity Low_complexity 1 37 0 2119 110 17 0 chr9 12172633 12172933 -130098511 - AluSc SINE Alu -4 305 1 24 0 0 0 chr9 12173107 12173131 -130098313 + AT_rich Low_complexity Low_complexity 1 24 0 813 241 174 15 chr9 12174169 12174434 -130097010 - MLT1A1 LTR MaLR -3 362 56 5248 149 15 52 chr9 12174478 12175878 -130095566 - L1PA16 LINE L1 0 6166 4795 186 71 0 0 chr9 12176908 12176936 -130094508 + (A)n Simple_repeat Simple_repeat 1 28 0 1352 150 48 0 chr9 12176985 12177212 -130094232 + MER41B LTR ERV1 1 238 -397 2689 98 93 5 chr9 12177212 12177619 -130093825 + LTR7 LTR ERV1 1 443 -7 2252 156 5 24 chr9 12177626 12178036 -130093408 + MER41B LTR ERV1 234 635 0 295 100 0 20 chr9 12178947 12179019 -130092425 - AluSc SINE Alu 0 299 247 1886 139 45 27 chr9 12179041 12179372 -130092072 + MER1B DNA MER1_type 1 337 0 23 54 0 0 chr9 12179662 12179699 -130091745 + AT_rich Low_complexity Low_complexity 1 37 0 302 295 72 97 chr9 12179822 12180026 -130091418 - MLT1K LTR MaLR -110 478 281 309 26 0 0 chr9 12180026 12180064 -130091380 + (CA)n Simple_repeat Simple_repeat 2 39 0 302 295 72 97 chr9 12180064 12180137 -130091307 - MLT1K LTR MaLR -307 281 208 210 457 16 0 chr9 12180375 12180502 -130090942 + L2 LINE L2 2896 3024 -248 656 153 0 8 chr9 12180560 12180678 -130090766 - L1MC/D LINE L1 -759 5574 5458 280 325 67 25 chr9 12180685 12180805 -130090639 + L2 LINE L2 3148 3272 0 26 0 0 0 chr9 12182624 12182650 -130088794 + AT_rich Low_complexity Low_complexity 1 26 0 188 279 101 13 chr9 12184481 12184560 -130086884 + MIR SINE MIR 81 166 -96 2208 112 0 3 chr9 12184918 12185221 -130086223 + AluSg SINE Alu 1 302 -8 612 256 81 78 chr9 12185533 12185853 -130085591 + L2 LINE L2 1372 1692 -1622 339 328 22 0 chr9 12185848 12185982 -130085462 + L2 LINE L2 1831 1967 -1347 * 470 253 121 20 chr9 12185982 12186180 -130085264 - L1MA10 LINE L1 0 6334 6117 842 308 91 42 chr9 12186235 12186915 -130084529 + L2 LINE L2 1958 2762 -552 645 259 101 28 chr9 12186917 12187354 -130084090 + Charlie2 DNA MER1_type 2394 2862 0 187 333 98 8 chr9 12188013 12188136 -130083308 - L2 LINE L2 -213 3059 2926 286 222 141 0 chr9 12188374 12188473 -130082971 - L1MD3 LINE L1 -23 7972 7860 502 226 102 0 chr9 12188574 12188711 -130082733 - L1MD3 LINE L1 -110 7885 7735 333 314 101 13 chr9 12189836 12189995 -130081449 - MLT1K LTR MaLR -80 508 336 314 356 16 31 chr9 12190017 12190211 -130081233 - L1MEc LINE L1 -6096 300 110 37 23 0 0 chr9 12191113 12191157 -130080287 + AT_rich Low_complexity Low_complexity 1 44 0 2692 183 14 45 chr9 12191822 12191860 -130079584 + MER34 LTR ERV1 1 39 -503 2453 138 44 7 chr9 12191860 12192273 -130079171 - MSTA LTR MaLR 0 428 1 2692 183 14 45 chr9 12192273 12192793 -130078651 + MER34 LTR ERV1 39 542 0 306 280 65 0 chr9 12192851 12192958 -130078486 + MIR SINE MIR 73 186 -76 251 54 27 0 chr9 12192965 12193002 -130078442 + (TC)n Simple_repeat Simple_repeat 1 38 0 2018 128 66 9 chr9 12193228 12193563 -130077881 + THE1A LTR MaLR 1 354 -1 10768 113 8 14 chr9 12193564 12195154 -130076290 + THE1A-int LTR MaLR 1 1580 0 2304 113 8 11 chr9 12195156 12195510 -130075934 + THE1A LTR MaLR 3 355 0 297 221 44 44 chr9 12195765 12195860 -130075584 - MER34 LTR ERV1 -419 123 29 822 150 36 7 chr9 12195860 12196000 -130075444 + MSTA LTR MaLR 1 144 -284 23 78 0 0 chr9 12196871 12196922 -130074522 + AT_rich Low_complexity Low_complexity 1 51 0 1942 229 61 28 chr9 12197566 12198170 -130073274 + MER92B LTR ERV1 1 624 -12 32 76 0 11 chr9 12198247 12198281 -130073163 + AT_rich Low_complexity Low_complexity 1 34 -57 2058 134 3 0 chr9 12198281 12198571 -130072873 - AluSx SINE Alu -21 291 1 32 76 0 11 chr9 12198571 12198628 -130072816 + AT_rich Low_complexity Low_complexity 34 91 0 24 67 0 0 chr9 12198691 12198736 -130072708 + AT_rich Low_complexity Low_complexity 1 45 0 33 0 0 0 chr9 12198914 12198947 -130072497 + AT_rich Low_complexity Low_complexity 1 33 0 338 286 121 29 chr9 12199233 12199439 -130072005 - L1M4 LINE L1 -2326 3820 3596 24 0 0 0 chr9 12199551 12199575 -130071869 + AT_rich Low_complexity Low_complexity 1 24 0 268 273 22 22 chr9 12200033 12200172 -130071272 - L1M4 LINE L1 -3155 2991 2853 22 0 0 0 chr9 12200176 12200198 -130071246 + AT_rich Low_complexity Low_complexity 1 22 0 219 200 20 0 chr9 12200835 12200885 -130070559 + (TA)n Simple_repeat Simple_repeat 1 51 0 853 175 148 27 chr9 12201480 12201703 -130069741 - LTR48 LTR ERV1 -537 250 1 1339 230 69 19 chr9 12201872 12202294 -130069150 - L1ME1 LINE L1 -5 6161 5719 1275 259 86 23 chr9 12202268 12202592 -130068852 - L1ME1 LINE L1 -1131 5015 4713 * 1879 187 25 129 chr9 12202592 12203143 -130068301 + LTR9 LTR ERV1 1 469 -143 1481 133 130 11 chr9 12203143 12203437 -130068007 - AluSx SINE Alu 0 312 2 1879 187 25 129 chr9 12203437 12203568 -130067876 + LTR9 LTR ERV1 469 612 0 1275 259 86 23 chr9 12203568 12203849 -130067595 - L1ME1 LINE L1 -1433 4713 4372 218 177 0 48 chr9 12203957 12204019 -130067425 + CT-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr9 12205040 12205070 -130066374 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr9 12206972 12206996 -130064448 + AT_rich Low_complexity Low_complexity 1 24 0 230 252 92 25 chr9 12207800 12207919 -130063525 - MLT1L LTR MaLR -8 607 481 1720 173 3 0 chr9 12208016 12208300 -130063144 - AluSx SINE Alu -27 285 1 31 26 0 0 chr9 12210704 12210742 -130060702 + AT_rich Low_complexity Low_complexity 1 38 0 2385 77 3 0 chr9 12210936 12211246 -130060198 - AluY SINE Alu 0 311 1 207 0 0 0 chr9 12212547 12212570 -130058874 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7369 197 46 12 chr9 12212594 12215800 -130055644 - L1MA4 LINE L1 -14 7705 22 2289 107 24 0 chr9 12216501 12216838 -130054606 + L1PA10 LINE L1 5823 6167 -1 293 294 0 0 chr9 12217011 12217096 -130054348 + T-rich Low_complexity Low_complexity 1 85 0 290 151 0 0 chr9 12217132 12217185 -130054259 + MER41A LTR ERV1 402 454 -100 21 36 0 0 chr9 12217305 12217333 -130054111 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 12217698 12217721 -130053723 + AT_rich Low_complexity Low_complexity 1 23 0 2078 123 0 0 chr9 12218325 12218629 -130052815 - AluSq SINE Alu 0 305 2 2189 64 0 0 chr9 12218693 12218960 -130052484 + AluY SINE Alu 1 267 -44 30 0 0 0 chr9 12219070 12219100 -130052344 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 12219154 12219182 -130052262 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 12219410 12219435 -130052009 + AT_rich Low_complexity Low_complexity 1 25 0 225 313 0 10 chr9 12219473 12219572 -130051872 + (TTAA)n Simple_repeat Simple_repeat 1 98 0 26 30 0 0 chr9 12219768 12219801 -130051643 + AT_rich Low_complexity Low_complexity 1 33 0 1117 246 141 17 chr9 12220293 12220712 -130050732 + MLT1D LTR MaLR 1 471 -34 1911 203 44 7 chr9 12220815 12221224 -130050220 - MSTB LTR MaLR -2 424 1 223 218 18 0 chr9 12221401 12221456 -130049988 + (TA)n Simple_repeat Simple_repeat 2 57 0 613 158 82 54 chr9 12222767 12222951 -130048493 - MER53 DNA DNA 0 189 1 1022 205 9 14 chr9 12223212 12223427 -130048017 + AluJo SINE Alu 87 300 -12 677 45 11 0 chr9 12223427 12223516 -130047928 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 2516 113 16 3 chr9 12224796 12225166 -130046278 - THE1C LTR MaLR 0 375 1 270 132 0 0 chr9 12226024 12226077 -130045367 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 285 165 19 chr9 12228084 12228242 -130043202 + MIR SINE MIR 26 206 -56 567 328 134 8 chr9 12228769 12229150 -130042294 - MLT1J2 LTR MaLR -19 431 3 1695 104 39 0 chr9 12229242 12229473 -130041971 - AluSx SINE Alu -72 240 1 2504 68 0 0 chr9 12229667 12229975 -130041469 - AluY SINE Alu -3 308 1 210 296 0 0 chr9 12230225 12230279 -130041165 + (CA)n Simple_repeat Simple_repeat 2 55 0 782 236 6 0 chr9 12230296 12230457 -130040987 + FAM SINE Alu 1 162 -13 26 30 0 0 chr9 12230464 12230497 -130040947 + AT_rich Low_complexity Low_complexity 1 33 0 275 202 48 29 chr9 12230729 12230833 -130040611 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 236 366 30 8 chr9 12231997 12232131 -130039313 + L2 LINE L2 2215 2351 -963 252 374 9 61 chr9 12232528 12232742 -130038702 + L2 LINE L2 2857 3059 -213 266 273 15 15 chr9 12232883 12232949 -130038495 + L2 LINE L2 3201 3266 -6 246 81 0 0 chr9 12233034 12233071 -130038373 + (TA)n Simple_repeat Simple_repeat 2 38 0 237 363 73 22 chr9 12233140 12233457 -130037987 + L2 LINE L2 1752 2084 -1230 253 289 197 73 chr9 12234628 12234846 -130036598 - MIR SINE MIR -12 250 6 1627 166 86 12 chr9 12236276 12236614 -130034830 - MER47A DNA MER2_type -2 364 2 1198 234 70 56 chr9 12236801 12237316 -130034128 + MER39 LTR ERV1 4 707 0 2122 244 76 37 chr9 12237454 12238102 -130033342 + LTR48 LTR ERV1 1 674 -113 1850 170 55 32 chr9 12238102 12238203 -130033241 - MER61C LTR ERV1 0 434 337 1898 121 0 7 chr9 12238203 12238504 -130032940 - AluSc SINE Alu 0 299 1 1850 170 55 32 chr9 12238504 12238841 -130032603 - MER61C LTR ERV1 -97 337 1 441 142 50 5 chr9 12238843 12238950 -130032494 + MER39 LTR ERV1 447 703 -4 320 274 12 12 chr9 12238953 12239037 -130032407 + MER58B DNA MER1_type 240 323 -18 1549 208 0 13 chr9 12239369 12239672 -130031772 + AluJb SINE Alu 1 299 -13 256 175 0 0 chr9 12239935 12239975 -130031469 - LTR7 LTR ERV1 0 450 411 429 191 35 9 chr9 12239975 12240090 -130031354 - HERVH LTR ERV1 -7595 118 1 1274 170 150 42 chr9 12240090 12240496 -130030948 - LTR7 LTR ERV1 0 450 1 324 205 36 36 chr9 12240758 12240841 -130030603 + LTR48-int LTR ERV1 1537 1619 -4712 424 100 0 0 chr9 12240841 12240901 -130030543 + Alu SINE Alu 1 60 -250 6322 208 57 57 chr9 12240901 12241905 -130029539 + LTR48-int LTR ERV1 1671 2721 -3610 235 182 0 0 chr9 12241905 12241949 -130029495 - MER54B LTR ERVL -4 789 746 6322 208 57 57 chr9 12241949 12242597 -130028847 + LTR48-int LTR ERV1 2721 3367 -2964 1085 175 53 77 chr9 12242632 12242969 -130028475 + LTR48-int LTR ERV1 3352 3680 -2651 717 180 0 16 chr9 12242985 12243113 -130028331 - FLAM_C SINE Alu -7 126 1 2152 172 41 111 chr9 12243200 12243564 -130027880 + LTR48-int LTR ERV1 3712 3999 -2332 2007 126 0 3 chr9 12243564 12243850 -130027594 - AluSx SINE Alu -27 285 1 2152 172 41 111 chr9 12243850 12244222 -130027222 + LTR48-int LTR ERV1 3999 4396 -1935 558 267 69 69 chr9 12244222 12244484 -130026960 + LTR48-int LTR ERV1 4510 4771 -1560 1375 149 3 57 chr9 12244493 12244775 -130026669 - LTR23 LTR ERV1 -10 427 161 19542 180 28 12 chr9 12244825 12248083 -130023361 + L1M1 LINE L1 16 3220 -4345 1204 109 47 0 chr9 12248083 12248275 -130023169 + L1PA13 LINE L1 5959 6159 -4 19542 180 28 12 chr9 12248275 12248414 -130023030 + L1M1 LINE L1 3220 3355 -4210 614 48 0 12 chr9 12248414 12248497 -130022947 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 19542 180 28 12 chr9 12248497 12249618 -130021826 + L1M1 LINE L1 3355 4622 -2943 1957 152 3 0 chr9 12249618 12249915 -130021529 - AluSx SINE Alu -14 298 1 19542 180 28 12 chr9 12249915 12250281 -130021163 + L1M1 LINE L1 4622 4981 -2584 995 188 45 0 chr9 12250281 12250457 -130020987 - AluSg/x SINE Alu -22 290 107 389 206 246 0 chr9 12250461 12250587 -130020857 + L1M1 LINE L1 4986 5142 -2423 * 6545 116 19 11 chr9 12250564 12251610 -130019834 + L1MA1 LINE L1 6671 7721 0 555 190 70 28 chr9 12251673 12251815 -130019629 - LTR23 LTR ERV1 -287 150 3 5483 148 26 16 chr9 12251815 12252271 -130019173 + LTR48-int LTR ERV1 4771 5221 -1110 2045 188 30 5 chr9 12252271 12252664 -130018780 - MER57A LTR ERV1 0 403 1 5483 148 26 16 chr9 12252664 12253217 -130018227 + LTR48-int LTR ERV1 5221 5790 -541 469 259 22 87 chr9 12253213 12253398 -130018046 + LTR48-int LTR ERV1 4541 4713 -223 * 717 254 110 19 chr9 12253568 12253777 -130017667 + LTR48 LTR ERV1 1 228 -559 3847 168 45 4 chr9 12253792 12254475 -130016969 + MER50 LTR ERV1 1 711 -23 2110 213 54 10 chr9 12254476 12255104 -130016340 - L1MC/D LINE L1 -575 5769 5114 1777 156 104 42 chr9 12255581 12255793 -130015651 - MSTA LTR MaLR 0 428 231 2132 102 0 3 chr9 12255793 12256115 -130015329 - AluSg SINE Alu 0 321 1 1777 156 104 42 chr9 12256115 12256304 -130015140 - MSTA LTR MaLR -197 231 1 2606 249 20 23 chr9 12257706 12258591 -130012853 - L1MC/D LINE L1 -1031 5115 4233 3073 92 5 0 chr9 12258591 12259016 -130012428 - L1PA6 LINE L1 0 6154 5728 2265 117 0 67 chr9 12259042 12259110 -130012334 - THE1B LTR MaLR -4 360 289 2762 74 22 0 chr9 12259110 12259477 -130011967 + L1PA8 LINE L1 5794 6168 -4 2265 117 0 67 chr9 12259477 12259794 -130011650 - THE1B LTR MaLR -75 289 1 9625 113 48 37 chr9 12259794 12261357 -130010087 - THE1B-int LTR MaLR 0 1580 1 2627 116 6 0 chr9 12261357 12261719 -130009725 - THE1B LTR MaLR 0 364 1 676 212 66 0 chr9 12261719 12261870 -130009574 - L1MC/D LINE L1 -1935 4211 4051 1523 235 166 34 chr9 12262519 12263072 -130008372 - MLT1E2 LTR MaLR 0 626 1 22 0 0 0 chr9 12263421 12263443 -130008001 + AT_rich Low_complexity Low_complexity 1 22 0 968 235 15 0 chr9 12264951 12265155 -130006289 - MER58A DNA MER1_type -9 215 9 21 0 0 0 chr9 12265884 12265905 -130005539 + AT_rich Low_complexity Low_complexity 1 21 0 284 330 11 0 chr9 12267505 12267596 -130003848 - MIR SINE MIR 0 262 171 207 0 0 0 chr9 12268457 12268480 -130002964 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr9 12269465 12269488 -130001956 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4238 179 55 30 chr9 12270098 12270378 -130001066 - Charlie5 DNA MER1_type -13 2611 2339 2164 147 108 5 chr9 12270378 12270766 -130000678 + MSTA LTR MaLR 1 428 0 4238 179 55 30 chr9 12270766 12270885 -130000559 - Charlie5 DNA MER1_type -285 2339 2224 2241 78 7 20 chr9 12270885 12271191 -130000253 + AluSp SINE Alu 1 302 -11 4238 179 55 30 chr9 12271191 12271879 -129999565 - Charlie5 DNA MER1_type -400 2224 1496 2987 241 61 10 chr9 12271914 12272879 -129998565 - Charlie5 DNA MER1_type -2488 124 1 22 35 0 0 chr9 12272983 12273012 -129998432 + AT_rich Low_complexity Low_complexity 1 29 0 35 0 0 0 chr9 12273194 12273229 -129998215 + AT_rich Low_complexity Low_complexity 1 35 0 3086 155 24 7 chr9 12273690 12274227 -129997217 + LTR38 LTR ERV1 11 556 0 21 0 0 0 chr9 12274609 12274630 -129996814 + AT_rich Low_complexity Low_complexity 1 21 0 213 240 0 0 chr9 12274698 12274773 -129996671 + (TG)n Simple_repeat Simple_repeat 2 76 0 190 421 40 16 chr9 12275138 12275264 -129996180 - L2 LINE L2 -2 3270 3142 1050 255 102 6 chr9 12275370 12275723 -129995721 + MLT1B LTR MaLR 1 387 -3 33 56 0 0 chr9 12276784 12276838 -129994606 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr9 12276944 12276967 -129994477 + AT_rich Low_complexity Low_complexity 1 23 0 2027 163 12 58 chr9 12277482 12277911 -129993533 - L1MA7 LINE L1 0 6291 5883 762 211 69 6 chr9 12278860 12279035 -129992409 + L1MB3 LINE L1 5997 6182 -1 244 269 0 0 chr9 12279617 12279669 -129991775 + (CA)n Simple_repeat Simple_repeat 2 53 0 1690 166 20 17 chr9 12280443 12280745 -129990699 - AluJb SINE Alu -8 304 2 1056 120 204 0 chr9 12280788 12280979 -129990465 - MER30 DNA MER1_type 0 230 1 198 0 0 0 chr9 12281648 12281670 -129989774 + (A)n Simple_repeat Simple_repeat 1 22 0 570 302 212 38 chr9 12282351 12283110 -129988334 + HAL1 LINE L1 66 956 -1551 668 258 19 43 chr9 12283131 12283550 -129987894 + L1ME1 LINE L1 5599 6068 -98 1230 225 75 28 chr9 12283694 12284014 -129987430 + MLT1B LTR MaLR 1 335 -55 22 56 0 0 chr9 12284115 12284151 -129987293 + AT_rich Low_complexity Low_complexity 1 36 0 1211 156 49 8 chr9 12284400 12284644 -129986800 - Tigger2 DNA MER2_type -10 2708 2455 1163 109 5 5 chr9 12284647 12284831 -129986613 + L1MA1 LINE L1 6118 6301 -1 43 20 0 0 chr9 12284832 12284882 -129986562 + AT_rich Low_complexity Low_complexity 1 50 0 252 345 61 12 chr9 12285120 12285531 -129985913 + L1M4 LINE L1 2268 2698 -3448 655 325 66 12 chr9 12285713 12286045 -129985399 + HERV16 LTR ERVL 851 1200 -3796 301 390 14 14 chr9 12286183 12286406 -129985038 + HERV16 LTR ERVL 1493 1715 -4049 1587 143 14 38 chr9 12286852 12287181 -129984263 + AluSx SINE Alu 1 312 0 240 320 143 7 chr9 12287551 12287698 -129983746 - MIR SINE MIR -60 202 36 2373 57 0 38 chr9 12287795 12288109 -129983335 - AluY SINE Alu -9 302 1 265 353 122 0 chr9 12288704 12288843 -129982601 + MIR3 SINE MIR 39 194 -14 1416 265 131 10 chr9 12289555 12290158 -129981286 - L1ME1 LINE L1 -140 6026 5351 198 108 81 0 chr9 12290234 12290308 -129981136 + (TA)n Simple_repeat Simple_repeat 1 80 0 1646 278 26 7 chr9 12290395 12291013 -129980431 + L1M4 LINE L1 3234 3863 -2283 * 11402 239 31 31 chr9 12291007 12293061 -129978383 - L1P4 LINE L1 -622 6982 4938 216 67 0 0 chr9 12293061 12293091 -129978353 + (TTG)n Simple_repeat Simple_repeat 1 30 0 11402 239 31 31 chr9 12293091 12294751 -129976693 - L1P4 LINE L1 -2666 4938 3280 2186 269 52 19 chr9 12294758 12295490 -129975954 - L1P4 LINE L1 -4654 2927 2172 340 340 0 10 chr9 12295716 12295819 -129975625 - L1P4 LINE L1 -5399 2182 2081 999 310 47 48 chr9 12295963 12296541 -129974903 - L1P4 LINE L1 -6210 1364 788 393 290 95 12 chr9 12296809 12296978 -129974466 - L1ME3A LINE L1 -233 5937 5755 1184 196 25 21 chr9 12297078 12297358 -129974086 - L1MC2 LINE L1 -11 6333 6053 742 175 0 8 chr9 12297358 12297484 -129973960 - Tigger1 DNA MER2_type -9 2409 2285 * 6046 145 19 21 chr9 12297480 12298509 -129972935 - Tigger1 DNA MER2_type -754 1664 638 939 242 68 37 chr9 12298509 12298904 -129972540 + MSTB1 LTR MaLR 1 432 0 4868 264 73 21 chr9 12298913 12300486 -129970958 + MSTB1-int LTR MaLR 28 1620 -31 1637 210 125 70 chr9 12300486 12301175 -129970269 + LTR8A LTR ERV1 1 727 0 4868 264 73 21 chr9 12301175 12301202 -129970242 + MSTB1-int LTR MaLR 1620 1644 -7 256 33 0 0 chr9 12301222 12301252 -129970192 + MSTB2 LTR MaLR 43 72 -385 1418 193 83 70 chr9 12301255 12301758 -129969686 - LTR54 LTR ERV1 0 510 1 1605 237 122 17 chr9 12301759 12302219 -129969225 - HUERS-P3b LTR ERV1 -395 7142 6635 2945 197 70 102 chr9 12302274 12303738 -129967706 - HUERS-P3b LTR ERV1 -791 5094 3475 4196 168 38 3 chr9 12303738 12304494 -129966950 - LTR39 LTR ERV1 0 783 1 2945 197 70 102 chr9 12304494 12304934 -129966510 - HUERS-P3b LTR ERV1 -2410 3475 3022 341 158 0 40 chr9 12304930 12305006 -129966438 - HUERS-P3b LTR ERV1 -2680 3918 3846 * 1048 215 53 40 chr9 12305008 12305544 -129965900 - HUERS-P3b LTR ERV1 -2558 2565 1728 291 239 0 14 chr9 12305553 12305624 -129965820 - HUERS-P3b LTR ERV1 -2575 3371 3302 251 277 0 0 chr9 12305678 12305743 -129965701 - HUERS-P3b LTR ERV1 -3373 4045 3981 2016 198 16 3 chr9 12306216 12306590 -129964854 + MER72 LTR ERV1 9 387 -335 2890 117 2 2 chr9 12306592 12307003 -129964441 - PABL_B LTR ERV1 -2 665 255 466 271 8 0 chr9 12307068 12307190 -129964254 - L1M4 LINE L1 -3577 2569 2447 251 229 59 7 chr9 12308322 12308475 -129962969 + (TA)n Simple_repeat Simple_repeat 2 162 0 616 268 155 0 chr9 12308720 12308914 -129962530 - MER58A DNA MER1_type 0 224 1 231 279 0 15 chr9 12310231 12310299 -129961145 + GA-rich Low_complexity Low_complexity 3 69 0 307 321 230 12 chr9 12311675 12311840 -129959604 + MIR SINE MIR 45 245 -17 694 266 28 83 chr9 12313018 12313623 -129957821 + L1MEc LINE L1 645 1216 -5180 22 70 0 0 chr9 12314019 12314062 -129957382 + AT_rich Low_complexity Low_complexity 1 43 0 242 309 40 13 chr9 12315167 12315319 -129956125 + MER103 DNA DNA 1 156 -10 814 233 50 63 chr9 12315822 12316268 -129955176 - L1ME LINE L1 -623 5612 5178 246 234 0 0 chr9 12316266 12316330 -129955114 - L1ME LINE L1 -3952 2263 2200 * 2238 282 69 39 chr9 12316442 12317973 -129953471 - L1ME LINE L1 -4732 1664 37 198 169 46 0 chr9 12318572 12318637 -129952807 + (TA)n Simple_repeat Simple_repeat 1 68 0 25 75 0 0 chr9 12318645 12318698 -129952746 + AT_rich Low_complexity Low_complexity 1 53 0 240 239 15 0 chr9 12318718 12318785 -129952659 + (TA)n Simple_repeat Simple_repeat 1 68 0 456 104 0 0 chr9 12318785 12318852 -129952592 + (CA)n Simple_repeat Simple_repeat 2 68 0 207 250 0 0 chr9 12319619 12319663 -129951781 + (CA)n Simple_repeat Simple_repeat 2 45 0 293 331 26 45 chr9 12320028 12320182 -129951262 - L2 LINE L2 -36 3277 3127 4772 173 61 24 chr9 12321590 12322275 -129949169 - L1MC1 LINE L1 -1 6332 5600 2405 67 0 10 chr9 12322275 12322589 -129948855 - AluY SINE Alu 0 311 1 4772 173 61 24 chr9 12322589 12322874 -129948570 - L1MC1 LINE L1 -733 5600 5327 2812 157 43 26 chr9 12322886 12323473 -129947971 - L1MA5A LINE L1 -10 6287 5691 2551 159 16 3 chr9 12323476 12324292 -129947152 - MER66A-int LTR ERV1 -702 5974 5018 7092 178 35 24 chr9 12324315 12325669 -129945775 - MER66A-int LTR ERV1 -4098 2578 1210 2932 216 30 69 chr9 12326030 12326981 -129944463 - MER66A-int LTR ERV1 -5562 1114 67 1133 203 22 87 chr9 12327022 12327428 -129944016 - MER66A LTR ERV1 -40 438 97 1725 203 32 15 chr9 12327467 12328011 -129943433 - L1MC/D LINE L1 -743 5403 4923 517 188 55 16 chr9 12327986 12328133 -129943311 - L1MA5A LINE L1 -756 5390 5241 * 347 335 108 20 chr9 12329172 12329375 -129942069 - MIR SINE MIR -7 255 35 479 244 39 13 chr9 12329429 12329471 -129941973 - L1MA10 LINE L1 -8 6326 6285 1947 262 57 28 chr9 12329471 12330438 -129941006 - L1ME1 LINE L1 -44 6122 5135 354 217 0 54 chr9 12330530 12330622 -129940822 - L1MC/D LINE L1 -1380 4766 4680 21 0 0 0 chr9 12331800 12331821 -129939623 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 12333986 12334008 -129937436 + AT_rich Low_complexity Low_complexity 1 22 0 773 217 144 37 chr9 12334261 12334560 -129936884 + MLT1C LTR MaLR 6 336 -131 3820 125 14 163 chr9 12334560 12336099 -129935345 + pTR5 LTR ERV1 781 2606 0 843 218 6 6 chr9 12336099 12336269 -129935175 + MLT1C LTR MaLR 296 465 -2 222 358 44 15 chr9 12336765 12336902 -129934542 - MER5A DNA MER1_type -48 141 1 223 288 27 55 chr9 12336949 12337022 -129934422 + MER5A DNA MER1_type 54 124 -65 396 0 0 0 chr9 12339337 12339381 -129932063 + (TATG)n Simple_repeat Simple_repeat 2 45 0 947 190 0 0 chr9 12339383 12339541 -129931903 - FAM SINE Alu -17 158 1 2446 161 19 26 chr9 12340949 12341416 -129930028 + MLT1C LTR MaLR 2 465 -2 343 198 0 23 chr9 12342089 12342175 -129929269 + L1MA9 LINE L1 6215 6298 -14 1110 228 44 34 chr9 12342347 12342712 -129928732 + MLT1B LTR MaLR 6 390 0 25 0 0 0 chr9 12344576 12344601 -129926843 + AT_rich Low_complexity Low_complexity 1 25 0 498 320 157 29 chr9 12345469 12345750 -129925694 - L3 LINE CR1 -5 1572 1256 234 274 217 0 chr9 12345761 12345867 -129925577 - L2 LINE L2 0 3313 3185 231 213 0 16 chr9 12346133 12346194 -129925250 - Charlie7 DNA MER1_type -2512 100 41 22 35 0 0 chr9 12346648 12346677 -129924767 + AT_rich Low_complexity Low_complexity 1 29 0 217 354 0 0 chr9 12346677 12346756 -129924688 - L2 LINE L2 -5 3308 3230 22 35 0 0 chr9 12349277 12349306 -129922138 + AT_rich Low_complexity Low_complexity 1 29 0 2512 111 6 3 chr9 12350337 12350698 -129920746 - THE1B LTR MaLR -2 362 1 256 297 22 43 chr9 12350905 12351043 -129920401 + L1MC/D LINE L1 5616 5750 -2058 2073 131 0 10 chr9 12351100 12351412 -129920032 + AluSx SINE Alu 4 312 0 27 49 0 0 chr9 12351582 12351623 -129919821 + AT_rich Low_complexity Low_complexity 1 41 0 24 53 0 0 chr9 12351680 12351718 -129919726 + AT_rich Low_complexity Low_complexity 1 38 0 783 131 0 48 chr9 12351798 12351943 -129919501 - L1MA3 LINE L1 -2 6303 6166 9678 39 0 4 chr9 12351943 12353629 -129917815 - L1PA5 LINE L1 -270 5884 4205 1128 56 0 0 chr9 12353623 12353766 -129917678 + L1PA5 LINE L1 5901 6043 -111 * 1964 68 0 0 chr9 12353629 12353872 -129917572 + L1PA5 LINE L1 5901 6149 -5 5014 155 17 42 chr9 12354044 12355237 -129916207 - L1MA3 LINE L1 -118 6187 5023 2187 154 32 2 chr9 12355237 12355640 -129915804 + L1MA3 LINE L1 4612 5026 -1120 351 222 167 9 chr9 12355677 12355785 -129915659 - L2 LINE L2 -7 3306 3182 298 380 25 0 chr9 12358237 12358358 -129913086 + MIR3 SINE MIR 57 180 -28 180 0 0 0 chr9 12358853 12358873 -129912571 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr9 12358916 12358945 -129912499 + AT_rich Low_complexity Low_complexity 1 29 0 190 339 0 32 chr9 12358947 12359009 -129912435 - MIR SINE MIR -173 89 30 628 272 117 58 chr9 12360076 12360579 -129910865 + HAL1 LINE L1 1586 2118 -389 21 0 0 0 chr9 12361083 12361104 -129910340 + AT_rich Low_complexity Low_complexity 1 21 0 1957 141 3 10 chr9 12361120 12361417 -129910027 + AluSq SINE Alu 3 297 -16 3980 33 0 6 chr9 12361419 12361941 -129909503 + L1PA3 LINE L1 5674 6155 0 26 0 0 0 chr9 12362152 12362178 -129909266 + AT_rich Low_complexity Low_complexity 1 26 0 297 363 20 10 chr9 12362950 12363052 -129908392 - L2 LINE L2 -17 3255 3153 857 212 33 24 chr9 12363643 12363855 -129907589 + MER20 DNA MER1_type 2 215 -4 41 66 0 0 chr9 12363979 12364055 -129907389 + AT_rich Low_complexity Low_complexity 1 76 0 280 308 136 42 chr9 12364067 12364684 -129906760 - HAL1b LINE L1 -601 747 73 24 67 0 0 chr9 12364839 12364884 -129906560 + AT_rich Low_complexity Low_complexity 1 45 0 427 219 171 0 chr9 12365272 12365377 -129906067 - MER5C DNA MER1_type -200 124 2 1550 164 0 93 chr9 12365884 12365919 -129905525 - MER4A LTR ERV1 0 664 627 1457 56 0 0 chr9 12365919 12366099 -129905345 + L1PA3 LINE L1 5976 6155 0 1550 164 0 93 chr9 12366099 12366386 -129905058 - MER4A LTR ERV1 -37 627 372 265 111 22 22 chr9 12366438 12366483 -129904961 - MER4A LTR ERV1 -566 98 54 1151 157 30 0 chr9 12366701 12366898 -129904546 - L1PA16 LINE L1 -9 7595 7393 3347 89 25 0 chr9 12366943 12367417 -129904027 - LTR19A LTR ERV1 0 486 1 39530 77 31 12 chr9 12367417 12372903 -129898541 - LTR19A-int LTR ERV1 0 5586 1 1519 90 50 0 chr9 12372904 12373290 -129898154 - LTR19A LTR ERV1 0 486 1 10691 236 31 15 chr9 12373720 12377409 -129894035 - L1PA16 LINE L1 -261 7343 3599 1996 176 12 18 chr9 12377411 12377723 -129893721 + MER1B DNA MER1_type 1 312 -2400 5275 74 0 25 chr9 12377723 12378429 -129893015 - LTR12 LTR ERV1 0 688 1 1996 176 12 18 chr9 12378429 12378457 -129892987 + MER1B DNA MER1_type 312 339 0 846 210 4 4 chr9 12378458 12378693 -129892751 - L1PA16 LINE L1 -3981 3603 3262 650 342 10 28 chr9 12379797 12380189 -129891255 - L1PA16 LINE L1 -7187 394 10 3030 217 25 130 chr9 12380200 12381612 -129889832 - L1 LINE L1 -2301 3845 2581 21 0 0 0 chr9 12382422 12382443 -129889001 + AT_rich Low_complexity Low_complexity 1 21 0 5725 110 3 34 chr9 12382764 12383685 -129887759 - L1PA11 LINE L1 0 6174 5302 23 54 0 0 chr9 12383737 12383774 -129887670 + AT_rich Low_complexity Low_complexity 1 37 0 482 245 13 40 chr9 12383936 12384087 -129887357 + L1ME2 LINE L1 5952 6098 -66 10152 197 22 12 chr9 12384405 12387467 -129883977 + L1PA15 LINE L1 2963 6049 -116 686 167 12 24 chr9 12387654 12387822 -129883622 + CT-rich Low_complexity Low_complexity 4 169 0 26 50 0 0 chr9 12387858 12387898 -129883546 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr9 12387957 12387985 -129883459 + AT_rich Low_complexity Low_complexity 1 28 0 9206 30 0 10 chr9 12388338 12390230 -129881214 - L1PA4 LINE L1 0 6155 4275 3345 131 16 0 chr9 12390330 12390833 -129880611 - HERVK22 LTR ERVK -6326 511 1 2373 167 76 25 chr9 12390833 12391317 -129880127 - LTR22 LTR ERVK 0 509 1 1284 257 117 8 chr9 12391317 12391885 -129879559 + L1MB3 LINE L1 4784 5418 -745 5594 113 10 18 chr9 12391886 12392755 -129878689 + L1PA10 LINE L1 5307 6168 0 2221 216 13 11 chr9 12392755 12393282 -129878162 + L1MB3 LINE L1 5652 6181 -2 353 286 0 0 chr9 12393325 12393423 -129878021 + L1M4 LINE L1 4617 4714 -1432 30 45 0 0 chr9 12394033 12394077 -129877367 + AT_rich Low_complexity Low_complexity 1 44 0 7277 196 33 40 chr9 12394279 12394992 -129876452 + L1M4c LINE L1 163 880 -5504 12702 44 1 0 chr9 12394992 12397340 -129874104 + L1PA4 LINE L1 3812 6152 -3 7277 196 33 40 chr9 12397340 12398026 -129873418 + L1M4c LINE L1 880 1549 -4835 1046 244 13 13 chr9 12398026 12398264 -129873180 + MER8 DNA MER2_type 2 239 0 7277 196 33 40 chr9 12398264 12398613 -129872831 + L1M4c LINE L1 1549 1899 -4485 * 7386 251 30 28 chr9 12398611 12398837 -129872607 + L1M4c LINE L1 2261 2485 -3897 2060 147 45 14 chr9 12398837 12399190 -129872254 - THE1B LTR MaLR 0 364 1 7386 251 30 28 chr9 12399190 12401725 -129869719 + L1M4c LINE L1 2485 5025 -1357 2246 174 65 26 chr9 12401725 12402215 -129869229 - LTR22 LTR ERVK 0 509 1 22752 85 4 2 chr9 12402215 12406725 -129864719 - HERVK22 LTR ERVK 0 6837 2314 432 173 0 24 chr9 12406708 12406846 -129864598 - HERVK22 LTR ERVK -6043 794 625 * 4280 268 65 30 chr9 12406997 12409572 -129861872 - L1PA13 LINE L1 -3481 3316 550 2169 80 14 3 chr9 12409572 12409860 -129861584 + AluSc SINE Alu 1 291 -18 4280 268 65 30 chr9 12409860 12410430 -129861014 - L1PA13 LINE L1 -6247 550 1 449 279 25 0 chr9 12411119 12411241 -129860203 + L1M4 LINE L1 825 949 -5593 1801 256 81 18 chr9 12411308 12412187 -129859257 + L1M4 LINE L1 1443 2466 -4180 2222 118 0 0 chr9 12412194 12412500 -129858944 + AluSg SINE Alu 1 306 -4 1272 144 43 0 chr9 12412521 12412729 -129858715 + MER30 DNA MER1_type 14 230 0 336 121 52 0 chr9 12412754 12412812 -129858632 - MER61D LTR ERV1 0 501 441 273 57 0 0 chr9 12412860 12412895 -129858549 + (A)n Simple_repeat Simple_repeat 1 35 0 1075 179 12 64 chr9 12412897 12413148 -129858296 - MLT1B LTR MaLR -28 362 125 408 114 171 0 chr9 12413152 12413222 -129858222 - THE1A LTR MaLR -273 82 1 11075 112 10 2 chr9 12413222 12414791 -129856653 - THE1A-int LTR MaLR 0 1580 1 2553 108 6 0 chr9 12414791 12415143 -129856301 - THE1A LTR MaLR 0 355 2 2447 187 22 9 chr9 12415145 12415697 -129855747 - L1 LINE L1 -1371 6194 5636 1638 195 16 8 chr9 12415697 12416039 -129855405 + MER61C LTR ERV1 1 434 0 1435 254 28 36 chr9 12416039 12416429 -129855015 + MER61C-int LTR ERV1 2 388 -4829 * 25457 125 55 34 chr9 12416427 12417886 -129853558 + MER61C-int LTR ERV1 666 2093 -3124 2321 72 0 0 chr9 12417886 12418176 -129853268 - AluY SINE Alu -11 300 11 25457 125 55 34 chr9 12418176 12418892 -129852552 + MER61C-int LTR ERV1 2093 2793 -2424 2229 97 0 10 chr9 12418892 12419214 -129852230 + AluSp SINE Alu 1 319 0 25457 125 55 34 chr9 12419214 12421492 -129849952 + MER61C-int LTR ERV1 2793 5216 -1 1469 178 69 7 chr9 12421492 12421816 -129849628 + MER61C LTR ERV1 1 431 -2 4084 223 36 4 chr9 12421819 12422800 -129848644 - L1 LINE L1 -1927 5638 4627 3942 161 14 56 chr9 12422797 12423352 -129848092 + L1PA16 LINE L1 5389 5903 -263 * 2169 125 3 0 chr9 12423352 12423657 -129847787 + AluSx SINE Alu 2 307 -5 3942 161 14 56 chr9 12423657 12423892 -129847552 + L1PA16 LINE L1 5903 6146 -20 * 6422 224 13 79 chr9 12423881 12425538 -129845906 - L1 LINE L1 -5046 2519 972 444 237 13 32 chr9 12427274 12427430 -129844014 - L1M4 LINE L1 -986 5160 5008 1383 178 62 38 chr9 12427444 12427669 -129843775 + MER44D DNA MER2_type 11 229 -2262 303 93 0 0 chr9 12427669 12427712 -129843732 + (CA)n Simple_repeat Simple_repeat 2 44 0 1383 178 62 38 chr9 12427712 12427806 -129843638 + MER44D DNA MER2_type 229 608 -1 1470 207 38 90 chr9 12427816 12427990 -129843454 - L1M4 LINE L1 -1149 4997 4816 1806 169 4 4 chr9 12427990 12428268 -129843176 - AluJb SINE Alu -32 280 3 1470 207 38 90 chr9 12428268 12428614 -129842830 - L1M4 LINE L1 -1330 4816 4504 586 256 123 10 chr9 12428622 12428825 -129842619 - L1M4 LINE L1 -2419 3727 3502 216 0 0 0 chr9 12428827 12428851 -129842593 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1583 163 43 29 chr9 12428997 12429347 -129842097 - L1MA7 LINE L1 -1 6290 5936 582 222 24 77 chr9 12429347 12429595 -129841849 - L1M4 LINE L1 -2650 3496 3262 4796 203 5 0 chr9 12429598 12430437 -129841007 - HUERS-P3 LTR ERV1 -2332 4759 3917 1795 273 15 35 chr9 12430465 12431008 -129840436 - HUERS-P3 LTR ERV1 -6242 2677 2146 5303 253 27 21 chr9 12431039 12432484 -129838960 - HUERS-P3 LTR ERV1 -5247 1749 296 1290 256 95 72 chr9 12432688 12433515 -129837929 - L1ME2 LINE L1 -2 6162 5283 216 0 0 0 chr9 12433515 12433539 -129837905 + (CA)n Simple_repeat Simple_repeat 2 25 0 1290 256 95 72 chr9 12433539 12434124 -129837320 - L1ME2 LINE L1 -881 5283 4713 5467 180 29 8 chr9 12434172 12435010 -129836434 - L1MA3 LINE L1 0 6305 5421 2862 156 37 89 chr9 12435010 12435739 -129835705 + LTR8 LTR ERV1 1 691 0 5467 180 29 8 chr9 12435739 12436351 -129835093 - L1MA3 LINE L1 -884 5421 4823 3060 230 64 39 chr9 12436356 12437324 -129834120 + MER61E-int LTR ERV1 5998 6989 -7 295 203 8 136 chr9 12437339 12437457 -129833987 + MER61E LTR ERV1 2 104 -465 * 499 250 23 15 chr9 12437444 12437576 -129833868 + LTR25 LTR ERV1 248 380 -414 250 217 14 43 chr9 12437566 12437635 -129833809 + MER61E LTR ERV1 99 165 -404 * 1104 159 56 0 chr9 12437645 12437840 -129833604 + MER61E LTR ERV1 342 547 -22 1794 158 50 7 chr9 12437883 12438005 -129833439 + AluSx SINE Alu 1 116 -196 348 43 0 0 chr9 12438005 12438051 -129833393 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1794 158 50 7 chr9 12438051 12438225 -129833219 + AluSx SINE Alu 116 310 -2 235 222 56 0 chr9 12438515 12438569 -129832875 + L2 LINE L2 3257 3313 0 186 306 74 0 chr9 12439242 12439350 -129832094 + MIR SINE MIR 97 212 -50 34 55 0 0 chr9 12439396 12439451 -129831993 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr9 12440505 12440528 -129830916 + AT_rich Low_complexity Low_complexity 1 23 0 362 39 19 0 chr9 12440635 12440687 -129830757 + (CA)n Simple_repeat Simple_repeat 2 54 0 739 293 150 26 chr9 12440704 12441131 -129830313 - MLT1H LTR MaLR -15 534 55 1544 179 0 30 chr9 12441226 12441517 -129829927 - AluJb SINE Alu 0 305 23 1187 205 5 0 chr9 12443557 12443767 -129827677 + AluJo SINE Alu 1 211 -101 704 175 0 111 chr9 12443816 12443987 -129827457 + FRAM SINE Alu 1 152 -14 25 31 0 0 chr9 12443994 12444026 -129827418 + AT_rich Low_complexity Low_complexity 1 32 0 222 358 138 22 chr9 12445881 12446236 -129825208 - L2 LINE L2 -1028 2286 1891 188 343 28 56 chr9 12446521 12446629 -129824815 + L2 LINE L2 3149 3253 -19 293 303 85 66 chr9 12446829 12447040 -129824404 - MLT1J LTR MaLR -74 437 223 327 385 21 17 chr9 12447375 12447609 -129823835 + L2 LINE L2 2227 2461 -853 17512 42 1 5 chr9 12447944 12450145 -129821299 + L1P LINE L1 2992 5183 -963 4946 204 13 1 chr9 12450259 12451135 -129820309 - L1M1 LINE L1 -6668 897 12 727 270 27 31 chr9 12451130 12451612 -129819832 - L1M4 LINE L1 -1445 4701 4222 * 2282 272 45 51 chr9 12451623 12452902 -129818542 - L1M4 LINE L1 -1843 4303 3033 923 255 41 52 chr9 12452902 12453271 -129818173 + MLT1A1 LTR MaLR 1 365 0 2282 272 45 51 chr9 12453271 12453563 -129817881 - L1M4 LINE L1 -3113 3033 2741 1129 317 62 49 chr9 12453763 12454786 -129816658 + L1MEc LINE L1 39 1139 -5257 23 92 0 0 chr9 12454797 12454862 -129816582 + AT_rich Low_complexity Low_complexity 1 65 0 225 313 134 0 chr9 12454894 12455006 -129816438 + L1MEc LINE L1 1194 1320 -5076 2451 212 49 11 chr9 12455083 12455696 -129815748 + L1MD3 LINE L1 7350 7985 -10 1680 66 0 9 chr9 12459233 12459460 -129811984 - L1PA7 LINE L1 -3 6151 5927 41 93 0 0 chr9 12461454 12461572 -129809872 + AT_rich Low_complexity Low_complexity 1 118 0 213 39 0 0 chr9 12462030 12462056 -129809388 + (A)n Simple_repeat Simple_repeat 1 26 0 183 304 72 36 chr9 12462226 12462364 -129809080 - MIR SINE MIR 0 262 120 25 31 0 0 chr9 12462461 12462493 -129808951 + AT_rich Low_complexity Low_complexity 1 32 0 906 61 0 30 chr9 12462498 12462629 -129808815 + SVA Other Other 1260 1386 0 533 202 0 18 chr9 12462629 12462743 -129808701 - MER104 DNA Tc2 -64 116 5 938 265 118 42 chr9 12463710 12464117 -129807327 + LTR38 LTR ERV1 87 524 -32 321 26 0 0 chr9 12464360 12464398 -129807046 + (TG)n Simple_repeat Simple_repeat 1 38 0 2604 215 21 36 chr9 12464561 12465222 -129806222 - L1MC3 LINE L1 -9 7776 7126 1456 221 135 29 chr9 12465229 12465682 -129805762 - MLT1D LTR MaLR -4 501 1 1656 147 40 0 chr9 12465817 12466068 -129805376 + Charlie3 DNA MER1_type 1 261 -2449 886 201 45 76 chr9 12466085 12466349 -129805095 - L1MA9 LINE L1 -330 5982 5727 539 316 73 89 chr9 12466787 12467094 -129804350 - ERVL LTR ERVL -2117 3647 3337 624 198 32 0 chr9 12467094 12467220 -129804224 - L1PA16 LINE L1 -14 6152 6023 539 316 73 89 chr9 12467220 12467747 -129803697 - ERVL LTR ERVL -2427 3337 2826 2331 191 107 31 chr9 12468067 12468675 -129802769 - LTR28 LTR ERV1 -395 625 1 852 341 66 41 chr9 12468675 12469284 -129802160 - ERVL LTR ERVL -3136 2628 2005 1600 204 36 40 chr9 12469292 12469738 -129801706 - L1M4 LINE L1 -451 5733 5290 6693 229 36 19 chr9 12469738 12471539 -129799905 + Cheshire DNA MER1_type 589 2419 -1 416 245 129 68 chr9 12471541 12472263 -129799181 + L1MC4 LINE L1 5901 6592 -1216 3337 243 43 50 chr9 12472670 12473795 -129797649 + L1MC4 LINE L1 6669 7785 -257 393 291 82 41 chr9 12473853 12473953 -129797491 + L1M4 LINE L1 4297 4391 -1755 1571 183 3 30 chr9 12473953 12474248 -129797196 - AluJb SINE Alu -25 287 1 393 291 82 41 chr9 12474248 12474463 -129796981 + L1M4 LINE L1 4391 4625 -1521 1467 162 68 39 chr9 12475710 12476019 -129795425 + MER44D DNA MER2_type 22 609 0 226 321 87 98 chr9 12476077 12476445 -129794999 + L2 LINE L2 2950 3313 0 1524 175 7 59 chr9 12476814 12477117 -129794327 + AluJb SINE Alu 3 289 -23 36 23 0 0 chr9 12477135 12477178 -129794266 + AT_rich Low_complexity Low_complexity 1 43 0 212 0 36 0 chr9 12478584 12478612 -129792832 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 993 263 146 38 chr9 12480225 12480731 -129790713 - MLT1E1 LTR MaLR -4 650 90 1575 154 113 0 chr9 12480789 12481082 -129790362 - MER44D DNA MER2_type 0 609 14 518 0 16 0 chr9 12481224 12481286 -129790158 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 256 134 60 0 chr9 12481286 12481353 -129790091 + (TA)n Simple_repeat Simple_repeat 2 72 0 38 61 0 0 chr9 12481557 12481623 -129789821 + AT_rich Low_complexity Low_complexity 1 66 0 360 299 246 9 chr9 12482476 12482687 -129788757 + MIR SINE MIR 2 262 0 290 143 76 162 chr9 12482883 12482930 -129788514 - MIR SINE MIR -11 251 216 2128 112 0 3 chr9 12482930 12483233 -129788211 - AluSx SINE Alu -8 304 3 290 143 76 162 chr9 12483233 12483290 -129788154 - MIR SINE MIR -46 216 156 192 307 47 39 chr9 12483777 12483904 -129787540 + L2 LINE L2 2271 2398 -916 1670 214 114 72 chr9 12484147 12484714 -129786730 + L1ME2 LINE L1 5435 6038 -126 3779 132 8 37 chr9 12484714 12485368 -129786076 - MER41B LTR ERV1 0 635 1 1670 214 114 72 chr9 12485368 12485492 -129785952 + L1ME2 LINE L1 6038 6155 -9 1167 228 44 35 chr9 12485611 12486057 -129785387 + LTR56 LTR ERV1 12 437 0 332 206 0 14 chr9 12486396 12486469 -129784975 - LTR27 LTR ERV1 0 1020 949 2052 250 27 22 chr9 12486521 12487416 -129784028 - LTR27 LTR ERV1 -70 950 1 1247 215 29 0 chr9 12488713 12488867 -129782577 - AluJo SINE Alu -24 288 123 410 0 0 20 chr9 12488867 12488918 -129782526 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1247 215 29 0 chr9 12488918 12489009 -129782435 - AluJo SINE Alu -189 123 36 219 346 0 0 chr9 12489749 12489827 -129781617 - MIR SINE MIR -26 236 159 24 0 0 0 chr9 12490891 12490915 -129780529 + AT_rich Low_complexity Low_complexity 1 24 0 237 119 0 0 chr9 12491115 12491157 -129780287 + (CA)n Simple_repeat Simple_repeat 2 43 0 234 288 0 0 chr9 12491167 12491226 -129780218 + MLT1J2 LTR MaLR 93 151 -299 269 278 41 30 chr9 12491895 12492064 -129779380 - L1MC/D LINE L1 -1926 5882 5712 21 57 0 0 chr9 12494779 12494814 -129776630 + AT_rich Low_complexity Low_complexity 1 35 0 700 255 43 64 chr9 12495315 12495734 -129775710 - Charlie1 DNA MER1_type -9 2752 2343 387 268 0 0 chr9 12495826 12495983 -129775461 + (TA)n Simple_repeat Simple_repeat 1 157 0 * 462 251 0 0 chr9 12495967 12496130 -129775314 + (TATATG)n Simple_repeat Simple_repeat 5 167 0 23 54 0 0 chr9 12496172 12496209 -129775235 + AT_rich Low_complexity Low_complexity 1 37 0 2423 65 0 7 chr9 12496350 12496656 -129774788 + AluY SINE Alu 1 304 -7 349 172 7 6 chr9 12498354 12498456 -129772988 - L1PB3 LINE L1 -667 5484 5382 * 3130 117 83 62 chr9 12498455 12499081 -129772363 + L1PB3 LINE L1 5516 6154 0 24 53 0 0 chr9 12499618 12499656 -129771788 + AT_rich Low_complexity Low_complexity 1 38 0 369 163 35 12 chr9 12500018 12500104 -129771340 + L1MCc LINE L1 27 114 -6309 804 301 9 0 chr9 12500189 12500402 -129771042 + ERVL LTR ERVL 338 552 -5212 6174 183 225 35 chr9 12500402 12501876 -129769568 + MER52A LTR ERV1 1 1755 0 591 292 43 11 chr9 12501876 12502110 -129769334 + ERVL LTR ERVL 549 863 -4901 3762 222 63 20 chr9 12502116 12502334 -129769110 + ERVL LTR ERVL 4548 4755 -1009 2421 212 11 0 chr9 12502334 12502801 -129768643 + MER70A LTR ERVL 1 472 0 3762 222 63 20 chr9 12502801 12503423 -129768021 + ERVL LTR ERVL 4755 5424 -340 387 250 0 0 chr9 12503496 12503584 -129767860 + ERVL LTR ERVL 5534 5621 -143 21 89 0 0 chr9 12503710 12503766 -129767678 + AT_rich Low_complexity Low_complexity 1 56 0 213 294 130 11 chr9 12505597 12505689 -129765755 - MIR SINE MIR -24 238 136 204 0 0 36 chr9 12505691 12505719 -129765725 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1002 136 0 26 chr9 12505719 12505873 -129765571 - AluSg/x SINE Alu -28 284 135 187 319 0 0 chr9 12505876 12505923 -129765521 - MIR SINE MIR -64 144 98 24 0 0 0 chr9 12506161 12506185 -129765259 + AT_rich Low_complexity Low_complexity 1 24 0 295 315 148 0 chr9 12507051 12507159 -129764285 + L2 LINE L2 3116 3239 -33 2364 93 0 0 chr9 12508543 12508845 -129762599 - AluSc SINE Alu -7 302 1 22 56 0 0 chr9 12509267 12509303 -129762141 + AT_rich Low_complexity Low_complexity 1 36 0 1413 131 0 38 chr9 12510853 12511089 -129760355 + MER30 DNA MER1_type 4 230 0 2132 166 22 0 chr9 12511197 12511553 -129759891 - THE1B LTR MaLR 0 364 1 10390 120 12 27 chr9 12511553 12513158 -129758286 - THE1B-int LTR MaLR 0 1580 1 2207 146 22 0 chr9 12513158 12513514 -129757930 - THE1B LTR MaLR 0 364 1 2345 94 0 0 chr9 12514050 12514349 -129757095 - AluSx SINE Alu -13 299 1 759 262 33 19 chr9 12514931 12515141 -129756303 + MIR SINE MIR 22 234 -28 22 0 0 0 chr9 12521634 12521656 -129749788 + AT_rich Low_complexity Low_complexity 1 22 0 436 183 0 0 chr9 12521852 12521923 -129749521 + AluJ/FLAM SINE Alu 12 82 -230 23 92 0 0 chr9 12521942 12522007 -129749437 + AT_rich Low_complexity Low_complexity 1 65 0 250 227 193 85 chr9 12523220 12523396 -129748048 + MER112 DNA MER1_type 1 195 -65 75 57 0 0 chr9 12524356 12524480 -129746964 + AT_rich Low_complexity Low_complexity 1 124 0 240 175 12 25 chr9 12524860 12524940 -129746504 + (TA)n Simple_repeat Simple_repeat 1 79 0 1806 181 112 20 chr9 12525351 12525743 -129745701 + MSTA LTR MaLR 1 428 0 8272 153 27 52 chr9 12525745 12526109 -129745335 + MSTA-int LTR MaLR 3 374 -1206 2214 117 3 13 chr9 12526109 12526425 -129745019 - AluSp SINE Alu 0 313 1 8272 153 27 52 chr9 12526425 12527678 -129743766 + MSTA-int LTR MaLR 374 1580 0 1738 172 158 11 chr9 12527678 12528051 -129743393 + MSTA LTR MaLR 1 428 0 4713 198 91 8 chr9 12530242 12531184 -129740260 + LTR28 LTR ERV1 1 1020 0 45 27 0 27 chr9 12532651 12532667 -129738777 + AT_rich Low_complexity Low_complexity 1 16 -56 1989 92 0 86 chr9 12532667 12532971 -129738473 + AluSq SINE Alu 1 278 -35 45 27 0 27 chr9 12532971 12533028 -129738416 + AT_rich Low_complexity Low_complexity 16 72 0 385 239 93 133 chr9 12533028 12533329 -129738115 - MLT1J2 LTR MaLR -33 417 83 186 429 97 9 chr9 12534278 12534609 -129736835 + L2 LINE L2 2571 2930 -384 350 292 8 54 chr9 12534826 12534956 -129736488 + L2 LINE L2 3184 3307 -6 353 337 95 19 chr9 12535014 12535278 -129736166 + LTR16A LTR ERVL 78 361 -89 765 295 82 21 chr9 12535353 12535733 -129735711 + HERV16 LTR ERVL 1 403 -4593 1221 291 78 13 chr9 12535954 12536405 -129735039 + HERV16 LTR ERVL 686 1165 -3831 471 348 82 49 chr9 12536441 12536769 -129734675 + HERV16 LTR ERVL 1243 1581 -3415 643 309 32 12 chr9 12536844 12537093 -129734351 + HERV16 LTR ERVL 1741 1994 -3002 559 234 6 51 chr9 12537106 12537264 -129734180 - MLT1A1 LTR MaLR -214 151 1 994 363 59 32 chr9 12537398 12537965 -129733479 + HERV16 LTR ERVL 2736 3286 -2478 2452 127 5 11 chr9 12537965 12538342 -129733102 + THE1C LTR MaLR 1 375 0 9849 123 18 31 chr9 12538342 12539942 -129731502 + THE1C-int LTR MaLR 1 1580 0 2153 152 5 24 chr9 12539942 12540324 -129731120 + THE1C LTR MaLR 1 375 0 994 363 59 32 chr9 12540324 12540828 -129730616 + HERV16 LTR ERVL 3285 3903 -1861 866 213 96 5 chr9 12541387 12541575 -129729869 - Tigger7 DNA MER2_type -2259 228 24 405 345 92 25 chr9 12541852 12542289 -129729155 + HERV16 LTR ERVL 4917 5382 -382 296 345 30 71 chr9 12542479 12542676 -129728768 + LTR16A LTR ERVL 81 269 -181 302 232 14 0 chr9 12542720 12542789 -129728655 + LTR16A LTR ERVL 381 450 0 219 69 0 0 chr9 12543309 12543338 -129728106 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 312 330 27 0 chr9 12543943 12544055 -129727389 - MIR SINE MIR -112 150 36 196 346 37 12 chr9 12545178 12545259 -129726185 - MIR SINE MIR -58 150 68 298 306 119 15 chr9 12548271 12548405 -129723039 - MIR SINE MIR -58 204 57 24 67 0 0 chr9 12548468 12548513 -129722931 + AT_rich Low_complexity Low_complexity 1 45 0 2482 59 0 3 chr9 12548767 12549070 -129722374 + AluY SINE Alu 1 302 -9 209 128 0 26 chr9 12549177 12549216 -129722228 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1589 191 32 0 chr9 12549297 12549580 -129721864 + AluJb SINE Alu 16 307 -5 5041 183 41 22 chr9 12550794 12552552 -129718892 - L1MA9 LINE L1 -20 6292 4495 26 0 0 0 chr9 12554034 12554060 -129717384 + AT_rich Low_complexity Low_complexity 1 26 0 208 385 9 0 chr9 12554518 12554627 -129716817 + GA-rich Low_complexity Low_complexity 1 110 0 23 54 0 0 chr9 12555192 12555229 -129716215 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr9 12555284 12555321 -129716123 + AT_rich Low_complexity Low_complexity 1 37 0 282 289 99 8 chr9 12555932 12556053 -129715391 - Charlie1 DNA MER1_type -837 1924 1793 514 250 0 0 chr9 12556053 12556157 -129715287 + Tigger3(Golem) DNA MER2_type 1 104 -2925 3075 143 51 11 chr9 12556167 12556735 -129714709 + Tigger3(Golem) DNA MER2_type 2391 2981 -48 22 0 0 0 chr9 12557199 12557221 -129714223 + AT_rich Low_complexity Low_complexity 1 22 0 258 312 55 0 chr9 12557228 12557337 -129714107 - MER104 DNA Tc2 -25 155 41 931 144 32 32 chr9 12557867 12558054 -129713390 - L1MA9 LINE L1 -331 5981 5795 2268 164 26 55 chr9 12558078 12558119 -129713325 - L1MA9 LINE L1 -1948 4198 4157 2070 134 3 0 chr9 12558119 12558424 -129713020 - AluSx SINE Alu -6 306 1 2268 164 26 55 chr9 12558424 12558875 -129712569 - L1MA9 LINE L1 -1989 4157 3720 1942 164 42 14 chr9 12558876 12559266 -129712178 + MLT2A2 LTR ERVL 1 304 -149 4517 261 89 62 chr9 12559271 12559345 -129712099 + L1MCa LINE L1 1540 1611 -4835 1999 139 16 0 chr9 12559345 12559662 -129711782 + L1PA15 LINE L1 5827 6148 -17 4517 261 89 62 chr9 12559662 12561036 -129710408 + L1MCa LINE L1 1611 2946 -3500 879 103 0 0 chr9 12561036 12561152 -129710292 + AluJb SINE Alu 21 136 -176 4517 261 89 62 chr9 12561152 12562281 -129709163 + L1MCa LINE L1 2946 4043 -2403 180 0 0 0 chr9 12562281 12562301 -129709143 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4517 261 89 62 chr9 12562301 12563667 -129707777 + L1MCa LINE L1 4043 5371 -1075 1109 37 0 0 chr9 12563667 12563802 -129707642 + L1PA3 LINE L1 6021 6155 0 4517 261 89 62 chr9 12563802 12563911 -129707533 + L1MCa LINE L1 5371 5476 -970 189 0 0 0 chr9 12563911 12563932 -129707512 + (TA)n Simple_repeat Simple_repeat 1 21 0 4517 261 89 62 chr9 12563932 12564232 -129707212 + L1MCa LINE L1 5476 6268 -178 298 67 44 0 chr9 12564233 12564278 -129707166 - U2 snRNA snRNA -141 47 1 1013 272 53 100 chr9 12564302 12564964 -129706480 + MER45C DNA AcHobo 1 631 -322 254 268 0 0 chr9 12564960 12565016 -129706428 + MER45C DNA AcHobo 898 953 0 * 472 264 0 8 chr9 12565036 12565161 -129706283 + L1MA10 LINE L1 6202 6325 -9 201 178 0 0 chr9 12565930 12565975 -129705469 + (TA)n Simple_repeat Simple_repeat 2 46 0 198 234 16 78 chr9 12566633 12566697 -129704747 - L2 LINE L2 0 3272 3213 182 114 0 29 chr9 12568029 12568064 -129703380 + (TG)n Simple_repeat Simple_repeat 2 35 0 25 31 0 0 chr9 12568922 12568954 -129702490 + AT_rich Low_complexity Low_complexity 1 32 0 26 64 0 0 chr9 12570743 12570790 -129700654 + AT_rich Low_complexity Low_complexity 1 47 0 257 172 30 10 chr9 12570866 12570965 -129700479 + (TA)n Simple_repeat Simple_repeat 1 101 0 33 0 0 0 chr9 12571526 12571559 -129699885 + AT_rich Low_complexity Low_complexity 1 33 0 181 204 111 0 chr9 12571823 12571877 -129699567 + MER5C DNA MER1_type 264 323 -1 2063 137 0 0 chr9 12572017 12572317 -129699127 + AluSx SINE Alu 1 300 -12 646 179 22 37 chr9 12572987 12573121 -129698323 + FLAM_C SINE Alu 1 132 -1 398 163 0 12 chr9 12573121 12573201 -129698243 + GA-rich Low_complexity Low_complexity 2 80 0 235 306 65 16 chr9 12573421 12573545 -129697899 + MIR SINE MIR 116 245 -17 344 209 40 54 chr9 12573576 12573724 -129697720 + L1ME4a LINE L1 6253 6398 -3 2017 130 7 0 chr9 12575112 12575405 -129696039 + AluSg SINE Alu 1 295 -15 453 36 0 0 chr9 12575864 12575919 -129695525 + (CA)n Simple_repeat Simple_repeat 2 56 0 1564 206 20 23 chr9 12576603 12576947 -129694497 - MER2 DNA MER2_type -1 343 1 1563 197 8 64 chr9 12577208 12577584 -129693860 - MLT1B LTR MaLR -32 358 4 3613 156 95 19 chr9 12577588 12578356 -129693088 - LTR1B LTR ERV1 0 826 1 754 209 175 7 chr9 12578502 12578819 -129692625 + L1MC3 LINE L1 5084 5436 -743 2210 224 67 39 chr9 12578824 12579513 -129691931 + L1MC3 LINE L1 5624 6331 -1454 21 57 0 0 chr9 12579726 12579761 -129691683 + AT_rich Low_complexity Low_complexity 1 35 0 2917 171 6 4 chr9 12579865 12580362 -129691082 - Tigger1 DNA MER2_type 0 2418 1921 3929 165 17 4 chr9 12580362 12581084 -129690360 + L1MA3 LINE L1 5363 6093 -212 7972 218 42 10 chr9 12581168 12583276 -129688168 + L1MB1 LINE L1 3073 5246 -900 2056 126 102 42 chr9 12583276 12583638 -129687806 + MSTA LTR MaLR 1 391 -37 2071 142 3 0 chr9 12583638 12583941 -129687503 - AluSx SINE Alu -8 304 1 2056 126 102 42 chr9 12583941 12583982 -129687462 + MSTA LTR MaLR 391 428 0 8531 170 34 16 chr9 12583983 12585604 -129685840 + MSTA-int LTR MaLR 2 1651 0 2122 155 80 6 chr9 12585606 12585967 -129685477 + MSTA LTR MaLR 3 390 -38 499 171 0 0 chr9 12585968 12586044 -129685400 + THE1-int LTR MaLR 1051 1126 -454 3652 201 21 52 chr9 12586075 12586204 -129685240 + L1MB1 LINE L1 5237 5368 -800 2520 60 0 0 chr9 12586204 12586506 -129684938 + AluY SINE Alu 1 302 -9 3652 201 21 52 chr9 12586506 12587248 -129684196 + L1MB1 LINE L1 5368 6086 -82 2347 153 32 25 chr9 12587248 12587679 -129683765 - Tigger2a DNA MER2_type 0 434 1 3652 201 21 52 chr9 12587679 12587759 -129683685 + L1MB1 LINE L1 6086 6167 -1 186 315 0 55 chr9 12588107 12588180 -129683264 - MIR3 SINE MIR -43 165 97 201 307 80 0 chr9 12589098 12589173 -129682271 - L2 LINE L2 -4 3309 3229 21 57 0 0 chr9 12589293 12589328 -129682116 + AT_rich Low_complexity Low_complexity 1 35 0 2118 145 22 6 chr9 12589335 12589693 -129681751 + THE1B LTR MaLR 1 364 0 8900 126 32 82 chr9 12589693 12591356 -129680088 + THE1B-int LTR MaLR 1 1580 0 2076 163 28 3 chr9 12591356 12591711 -129679733 + THE1B LTR MaLR 1 364 0 515 329 31 45 chr9 12591711 12592003 -129679441 - L2 LINE L2 -170 3143 2856 694 292 74 3 chr9 12592007 12592305 -129679139 - HAL1 LINE L1 -730 1777 1459 37 62 0 0 chr9 12592423 12592488 -129678956 + AT_rich Low_complexity Low_complexity 1 65 0 1330 261 59 50 chr9 12592488 12593150 -129678294 - L1ME2 LINE L1 -40 6124 5457 1828 181 39 16 chr9 12593270 12593656 -129677788 - L1MA9 LINE L1 -483 5829 5435 354 332 31 62 chr9 12593891 12594117 -129677327 - HAL1 LINE L1 -1577 930 712 427 256 138 0 chr9 12594434 12594594 -129676850 - L2 LINE L2 -2646 668 487 1037 184 8 3 chr9 12594946 12595163 -129676281 + L1MDa LINE L1 2511 2726 -3814 750 201 13 0 chr9 12595268 12595417 -129676027 - FRAM SINE Alu -16 160 10 1040 157 12 0 chr9 12595557 12595723 -129675721 + AluSg/x SINE Alu 130 297 -15 43 56 0 0 chr9 12595911 12595982 -129675462 + AT_rich Low_complexity Low_complexity 1 71 0 284 321 53 8 chr9 12596474 12596605 -129674839 + L2 LINE L2 2468 2604 -710 479 157 25 9 chr9 12596634 12596747 -129674697 - L1MA5 LINE L1 -241 5939 5826 270 278 0 9 chr9 12596694 12596802 -129674642 + L1MA3 LINE L1 6199 6305 0 * 721 272 14 115 chr9 12596813 12597299 -129674145 + LTR16B LTR ERVL 28 464 0 353 320 77 17 chr9 12597305 12597486 -129673958 + L2 LINE L2 2612 2803 -511 360 324 52 0 chr9 12597503 12597639 -129673805 + L2 LINE L2 2940 3082 -231 307 291 82 38 chr9 12598154 12598312 -129673132 + L2 LINE L2 3148 3312 -1 28 29 0 0 chr9 12598455 12598490 -129672954 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr9 12598547 12598579 -129672865 + AT_rich Low_complexity Low_complexity 1 32 0 1952 106 8 0 chr9 12598589 12598853 -129672591 + AluSx SINE Alu 11 276 -36 4423 235 64 21 chr9 12599121 12601559 -129669885 - L1MC2 LINE L1 -9 6615 4086 2180 249 30 43 chr9 12601561 12603183 -129668261 - L1MC2 LINE L1 -4851 1056 7 322 289 122 20 chr9 12603211 12603408 -129668036 + L1M4 LINE L1 4213 4429 -1717 41 93 0 0 chr9 12603749 12603867 -129667577 + AT_rich Low_complexity Low_complexity 1 118 0 22 0 0 30 chr9 12603991 12604010 -129667434 + AT_rich Low_complexity Low_complexity 1 20 -12 2382 78 3 0 chr9 12604010 12604305 -129667139 + AluSp SINE Alu 1 296 -17 22 0 0 30 chr9 12604305 12604318 -129667126 + AT_rich Low_complexity Low_complexity 20 32 0 1376 203 0 4 chr9 12654789 12655030 -129616414 + L1P3 LINE L1 10 249 -6212 2187 111 3 35 chr9 12655194 12655509 -129615935 - AluSx SINE Alu -7 305 1 2288 112 3 0 chr9 12655585 12655890 -129615554 - AluSx SINE Alu -6 306 1 421 181 0 0 chr9 12656221 12656293 -129615151 - FLAM_A SINE Alu -18 124 53 2326 67 0 0 chr9 12656396 12656716 -129614728 + AluY SINE Alu 1 320 0 1317 105 0 28 chr9 12656716 12656897 -129614547 + AluSg/x SINE Alu 132 307 -5 2397 85 3 0 chr9 12658062 12658356 -129613088 - AluSp SINE Alu -16 297 3 2443 94 13 0 chr9 12658532 12658840 -129612604 - AluSx SINE Alu 0 312 1 702 157 0 0 chr9 12659117 12659238 -129612206 - AluSg/x SINE Alu 0 309 189 1548 118 0 5 chr9 12659119 12659339 -129612105 - AluSg/x SINE Alu -2 308 90 208 139 0 0 chr9 12661204 12661240 -129610204 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr9 12661907 12661929 -129609515 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr9 12662916 12662945 -129608499 + AT_rich Low_complexity Low_complexity 1 29 0 300 315 99 17 chr9 12662961 12663253 -129608191 - L1MC4a LINE L1 -1920 5888 5573 42 0 0 0 chr9 12663539 12663581 -129607863 + AT_rich Low_complexity Low_complexity 1 42 0 856 326 94 15 chr9 12663663 12664377 -129607067 + L1M4 LINE L1 3840 4609 -1537 281 343 62 48 chr9 12664497 12664806 -129606638 + L1MEc LINE L1 92 404 -5992 204 135 0 0 chr9 12664898 12664935 -129606509 + (CCA)n Simple_repeat Simple_repeat 2 38 0 254 322 78 0 chr9 12664970 12665085 -129606359 + L1MEc LINE L1 499 622 -5774 29388 111 13 43 chr9 12666003 12672341 -129599103 - L1PA7 LINE L1 -5 6464 154 303 183 56 14 chr9 12672341 12672412 -129599032 - MER31A LTR ERV1 -332 153 80 29388 111 13 43 chr9 12672412 12672562 -129598882 - L1PA7 LINE L1 -6315 154 1 32 26 0 0 chr9 12672687 12672726 -129598718 + AT_rich Low_complexity Low_complexity 1 39 0 744 222 66 37 chr9 12673185 12673428 -129598016 - MER31A LTR ERV1 -235 250 1 664 249 51 30 chr9 12673429 12673458 -129597986 - MER31A-int LTR ERV1 -21 4915 4888 180 111 0 0 chr9 12673458 12673485 -129597959 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 664 249 51 30 chr9 12673485 12673692 -129597752 - MER31A-int LTR ERV1 -48 4888 4674 269 279 44 0 chr9 12675645 12675713 -129595731 - MER31A-int LTR ERV1 -4674 4245 4175 261 250 69 52 chr9 12676004 12676120 -129595324 - LTR57-int LTR ERVL -3196 2147 2030 24 32 0 0 chr9 12677709 12677740 -129593704 + AT_rich Low_complexity Low_complexity 1 31 0 760 207 89 43 chr9 12677957 12678159 -129593285 - MLT1D LTR MaLR 0 618 335 400 353 115 12 chr9 12678901 12679153 -129592291 + L2 LINE L2 2995 3272 0 278 244 89 49 chr9 12679708 12679831 -129591613 - MIR SINE MIR -115 147 20 22 35 0 0 chr9 12679983 12680012 -129591432 + AT_rich Low_complexity Low_complexity 1 29 0 1042 169 0 12 chr9 12680206 12680378 -129591066 + AluJo SINE Alu 1 170 -142 342 268 41 21 chr9 12680842 12680939 -129590505 - MIR3 SINE MIR -49 159 61 1820 216 36 78 chr9 12681125 12681703 -129589741 - MLT2B3 LTR ERVL 0 554 1 22 35 0 0 chr9 12682197 12682226 -129589218 + AT_rich Low_complexity Low_complexity 1 29 0 2516 127 63 97 chr9 12683844 12684470 -129586974 - MER4B LTR ERV1 0 766 1 530 193 18 18 chr9 12684509 12684623 -129586821 - FLAM_A SINE Alu -11 131 18 1646 162 51 51 chr9 12684643 12684800 -129586644 + MLT1B LTR MaLR 10 166 -224 1710 142 4 4 chr9 12684800 12685060 -129586384 + AluSq SINE Alu 39 298 -15 1646 162 51 51 chr9 12685060 12685253 -129586191 + MLT1B LTR MaLR 165 360 -30 1040 222 143 101 chr9 12685303 12686018 -129585426 + LTR1B LTR ERV1 82 826 0 2197 149 22 3 chr9 12686342 12686712 -129584732 + LTR8A LTR ERV1 1 377 -350 4220 121 49 49 chr9 12686713 12687467 -129583977 - LTR1 LTR ERV1 0 785 32 1201 195 47 58 chr9 12687480 12687824 -129583620 + LTR8A LTR ERV1 375 714 -13 2031 287 51 24 chr9 12688112 12688148 -129583296 + L1ME1 LINE L1 150 184 -6212 318 26 0 0 chr9 12688148 12688187 -129583257 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2031 287 51 24 chr9 12688187 12688975 -129582469 + L1ME1 LINE L1 184 996 -5400 313 250 81 48 chr9 12688979 12689103 -129582341 - L1MEc LINE L1 -5034 1350 1223 343 218 20 10 chr9 12689113 12689214 -129582230 - L1MEc LINE L1 -5227 1336 1235 258 250 118 80 chr9 12689331 12689847 -129581597 + L1ME1 LINE L1 2898 3433 -2782 951 253 152 62 chr9 12690062 12690247 -129581197 + L1M4 LINE L1 1 168 -6374 3550 179 25 15 chr9 12690247 12690967 -129580477 - LTR8A LTR ERV1 0 727 1 951 253 152 62 chr9 12690967 12691280 -129580164 + L1M4 LINE L1 168 544 -5998 331 248 104 24 chr9 12691287 12691412 -129580032 + MLT1B LTR MaLR 404 538 -4 247 279 185 71 chr9 12691530 12691784 -129579660 + L1ME1 LINE L1 5094 5376 -839 1044 277 66 7 chr9 12691816 12692238 -129579206 + L1ME1 LINE L1 5479 5925 -310 225 128 0 0 chr9 12692954 12693001 -129578443 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 719 185 31 15 chr9 12693219 12693349 -129578095 - FLAM_C SINE Alu -1 132 1 21 36 0 0 chr9 12693390 12693418 -129578026 + AT_rich Low_complexity Low_complexity 1 28 0 4351 197 25 48 chr9 12693424 12694683 -129576761 - L1MA10 LINE L1 -15 6319 5088 2202 211 40 29 chr9 12694680 12695309 -129576135 + L1MA10 LINE L1 4441 5076 -1070 * 2006 90 60 4 chr9 12695526 12695817 -129575627 + AluY SINE Alu 1 306 0 22 35 0 0 chr9 12695953 12695982 -129575462 + AT_rich Low_complexity Low_complexity 1 29 0 2328 138 11 3 chr9 12696041 12696402 -129575042 + THE1B LTR MaLR 1 364 0 10215 123 37 3 chr9 12696403 12697930 -129573514 + THE1B-int LTR MaLR 2 1580 0 1589 144 25 18 chr9 12697930 12698208 -129573236 + THE1B LTR MaLR 1 280 -84 1400 164 0 0 chr9 12698208 12698422 -129573022 + THE1-int LTR MaLR 938 1151 -429 305 414 55 0 chr9 12699586 12699731 -129571713 + L2 LINE L2 3112 3264 -8 369 93 0 0 chr9 12700728 12700782 -129570662 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1941 169 107 13 chr9 12701393 12701784 -129569660 + MSTA LTR MaLR 1 428 0 761 268 65 0 chr9 12704272 12704533 -129566911 - MER5C DNA MER1_type -43 281 4 1382 269 75 53 chr9 12705533 12706636 -129564808 + L1ME LINE L1 508 1611 -4469 577 308 40 9 chr9 12706816 12707040 -129564404 + LTR16A LTR ERVL 176 406 -44 311 353 43 27 chr9 12707046 12707346 -129564098 + L1ME LINE L1 2271 2575 -3505 1840 175 51 0 chr9 12707363 12707694 -129563750 - MER7A DNA MER2_type 0 346 1 370 188 0 62 chr9 12707694 12707780 -129563664 - L1MC4 LINE L1 -1347 6695 6614 364 265 0 31 chr9 12707699 12707797 -129563647 + L1MC4 LINE L1 6614 6708 -1334 * 402 304 12 70 chr9 12708789 12708960 -129562484 + MER5B DNA MER1_type 1 161 -17 408 258 52 79 chr9 12709238 12709529 -129561915 - L1ME3 LINE L1 -22 6140 5858 33 66 0 0 chr9 12709565 12709626 -129561818 + AT_rich Low_complexity Low_complexity 1 61 0 408 281 131 70 chr9 12709802 12710224 -129561220 + MLT1H LTR MaLR 114 549 -6 21 57 0 0 chr9 12710339 12710374 -129561070 + AT_rich Low_complexity Low_complexity 1 35 0 374 80 0 0 chr9 12711050 12711100 -129560344 + L1P LINE L1 5123 5172 -974 2378 252 10 0 chr9 12711109 12711705 -129559739 + L1 LINE L1 2253 2854 -3292 1302 309 74 24 chr9 12711708 12712332 -129559112 + MER110-int LTR ERV1 2254 2908 -1739 192 40 0 0 chr9 12712544 12712569 -129558875 + (T)n Simple_repeat Simple_repeat 1 25 0 326 313 47 47 chr9 12712582 12712775 -129558669 + MER110-int LTR ERV1 4410 4605 -42 2186 108 3 3 chr9 12712775 12713081 -129558363 + AluSq SINE Alu 1 306 -7 326 313 47 47 chr9 12713081 12713101 -129558343 + MER110-int LTR ERV1 4604 4623 -24 331 350 110 30 chr9 12713211 12713548 -129557896 + L1ME3 LINE L1 5526 5889 -273 328 368 72 13 chr9 12713652 12713804 -129557640 - L2 LINE L2 -239 3074 2914 199 338 76 25 chr9 12713999 12714156 -129557288 + L2 LINE L2 3149 3313 0 216 200 0 0 chr9 12714277 12714322 -129557122 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 204 407 82 21 chr9 12714340 12714583 -129556861 - L2 LINE L2 -89 3183 2926 41 36 0 0 chr9 12714943 12714998 -129556446 + AT_rich Low_complexity Low_complexity 1 55 0 4038 74 0 0 chr9 12715619 12716146 -129555298 - L1PA7 LINE L1 -3 6151 5625 579 360 20 65 chr9 12716281 12716776 -129554668 + L2 LINE L2 237 709 -2605 763 247 150 30 chr9 12716909 12717217 -129554227 - Charlie1a DNA MER1_type -1084 371 27 357 330 101 9 chr9 12717482 12717700 -129553744 + L3 LINE CR1 1155 1392 -185 25 0 0 0 chr9 12718063 12718088 -129553356 + AT_rich Low_complexity Low_complexity 1 25 0 29 67 0 0 chr9 12718965 12719010 -129552434 + AT_rich Low_complexity Low_complexity 1 45 0 369 225 13 40 chr9 12719034 12719185 -129552259 + (TATAA)n Simple_repeat Simple_repeat 2 148 0 56 67 0 0 chr9 12719290 12719395 -129552049 + AT_rich Low_complexity Low_complexity 1 105 0 536 294 74 69 chr9 12719427 12719647 -129551797 + L1MC4 LINE L1 6702 6926 -1116 1605 193 0 6 chr9 12719647 12719969 -129551475 + L1MA6 LINE L1 5981 6300 0 536 294 74 69 chr9 12719969 12720112 -129551332 + L1MC4 LINE L1 6926 7067 -975 314 314 33 19 chr9 12720347 12720557 -129550887 + L1MC4 LINE L1 7690 7902 -140 245 155 17 0 chr9 12720565 12720623 -129550821 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 268 266 51 25 chr9 12720885 12720964 -129550480 + L2 LINE L2 3228 3308 -5 186 393 9 9 chr9 12722722 12722829 -129548615 + L2 LINE L2 2376 2482 -832 1069 219 81 51 chr9 12723120 12723454 -129547990 + MER2 DNA MER2_type 1 344 0 25 0 0 0 chr9 12723691 12723716 -129547728 + AT_rich Low_complexity Low_complexity 1 25 0 2041 141 3 0 chr9 12724965 12725271 -129546173 + AluSp SINE Alu 1 307 -6 1498 212 68 0 chr9 12725920 12726260 -129545184 + MLT1A1 LTR MaLR 1 363 -2 22 0 0 0 chr9 12726410 12726432 -129545012 + AT_rich Low_complexity Low_complexity 1 22 0 8673 46 2 4 chr9 12727190 12729039 -129542405 + L1PA5 LINE L1 4305 6151 -3 188 207 138 0 chr9 12729770 12729828 -129541616 + L2 LINE L2 2686 2751 -563 719 353 74 30 chr9 12731844 12732641 -129538803 + ERVL LTR ERVL 1944 2747 -2249 7062 199 88 24 chr9 12732872 12734426 -129537018 + MER52A LTR ERV1 1 1755 0 3289 206 62 5 chr9 12734461 12735134 -129536310 - MER44D DNA MER2_type 0 605 22 222 37 0 0 chr9 12735806 12735833 -129535611 + (A)n Simple_repeat Simple_repeat 1 27 0 269 345 9 9 chr9 12736416 12736526 -129534918 + ERVL LTR ERVL 5216 5325 -439 207 0 0 0 chr9 12736598 12736621 -129534823 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr9 12736622 12736652 -129534792 + AT_rich Low_complexity Low_complexity 1 30 0 9414 210 70 32 chr9 12736673 12739543 -129531901 - L1M LINE L1 -769 5377 2447 27 0 0 0 chr9 12739543 12739570 -129531874 + AT_rich Low_complexity Low_complexity 1 27 0 328 360 23 29 chr9 12739578 12739750 -129531694 - L1M3d LINE L1 -5509 382 212 2903 299 51 29 chr9 12739822 12742278 -129529166 - L1M1 LINE L1 -3873 2278 6 423 301 57 17 chr9 12742310 12742486 -129528958 - LTR33 LTR ERVL -10 511 329 1155 274 95 16 chr9 12742546 12742977 -129528467 + MLT1D LTR MaLR 39 503 -2 21 57 0 0 chr9 12744616 12744651 -129526793 + AT_rich Low_complexity Low_complexity 1 35 0 704 325 54 31 chr9 12744841 12745195 -129526249 + L2 LINE L2 2949 3310 -3 270 297 42 8 chr9 12745499 12745617 -129525827 - L2 LINE L2 -1449 1865 1744 284 62 0 21 chr9 12746015 12746063 -129525381 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1006 128 12 0 chr9 12746077 12746249 -129525195 + CT-rich Low_complexity Low_complexity 3 176 0 2191 91 0 32 chr9 12746251 12746559 -129524885 - AluSc SINE Alu -10 299 2 25 0 0 0 chr9 12746961 12746986 -129524458 + AT_rich Low_complexity Low_complexity 1 25 0 2490 114 34 42 chr9 12746986 12747458 -129523986 - L1MA3 LINE L1 0 7724 7257 448 123 0 0 chr9 12747458 12747531 -129523913 - L1MA3 LINE L1 -914 6810 6738 5667 179 46 9 chr9 12747547 12748732 -129522712 - L1MA3 LINE L1 -1263 6302 5074 * 15103 175 32 25 chr9 12748728 12751550 -129519894 - L1MA3 LINE L1 -4715 2850 9 215 372 0 0 chr9 12752314 12752408 -129519036 + GA-rich Low_complexity Low_complexity 2 95 0 25 31 0 0 chr9 12752853 12752885 -129518559 + AT_rich Low_complexity Low_complexity 1 32 0 812 106 0 0 chr9 12754390 12754503 -129516941 - L1P LINE L1 -5442 704 592 11327 57 9 1 chr9 12754503 12756718 -129514726 + L1PA5 LINE L1 3932 6154 0 312 280 80 8 chr9 12756794 12756919 -129514525 - MLT1I LTR MaLR -267 142 9 325 360 52 28 chr9 12757389 12757639 -129513805 + L1ME4a LINE L1 5639 5894 -227 669 279 198 13 chr9 12758208 12758769 -129512675 - LTR50 LTR ERVL -42 753 50 21 36 0 0 chr9 12758929 12758957 -129512487 + AT_rich Low_complexity Low_complexity 1 28 0 369 250 0 0 chr9 12759024 12759108 -129512336 - MER94 DNA DNA -39 95 12 2757 186 47 29 chr9 12760008 12760620 -129510824 - L1MD1 LINE L1 -1 6241 5619 32 64 0 13 chr9 12760631 12760657 -129510787 + AT_rich Low_complexity Low_complexity 1 26 -51 252 0 0 0 chr9 12760657 12760685 -129510759 + (CA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr9 12760684 12760704 -129510740 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 32 64 0 13 chr9 12760685 12760755 -129510689 + AT_rich Low_complexity Low_complexity 26 77 0 703 20 4 0 chr9 12760755 12760852 -129510592 - L1PA4 LINE L1 -3 6152 6053 275 130 19 0 chr9 12760850 12760904 -129510540 + (TA)n Simple_repeat Simple_repeat 1 55 0 360 77 0 0 chr9 12760974 12761026 -129510418 + (TG)n Simple_repeat Simple_repeat 2 53 0 28 29 0 0 chr9 12761738 12761773 -129509671 + AT_rich Low_complexity Low_complexity 1 35 0 231 114 0 0 chr9 12764648 12764683 -129506761 + (TG)n Simple_repeat Simple_repeat 2 36 0 1323 239 28 12 chr9 12764851 12765177 -129506267 - MLT1A1 LTR MaLR -34 331 1 722 197 56 17 chr9 12765185 12765363 -129506081 - L1MD1 LINE L1 -136 6106 5922 4940 255 56 30 chr9 12765377 12767409 -129504035 + L1M4 LINE L1 14 2096 -4550 1933 336 64 15 chr9 12767637 12768429 -129503015 + L1M4b LINE L1 260 1090 -5769 5867 117 9 3 chr9 12768478 12769404 -129502040 - L1PB1 LINE L1 0 6151 5221 1402 261 59 52 chr9 12769405 12770636 -129500808 + L1M4b LINE L1 1185 2418 -4541 4372 28 0 0 chr9 12770974 12771502 -129499942 - L1P LINE L1 -772 5374 4847 822 58 0 0 chr9 12771502 12771598 -129499846 + L1PA3 LINE L1 6050 6152 -3 699 287 37 12 chr9 12771622 12772211 -129499233 + L1M4b LINE L1 2775 3478 -3479 * 1233 252 40 86 chr9 12772207 12772961 -129498483 + L1M4b LINE L1 3831 4549 -2408 1107 261 40 8 chr9 12772968 12773347 -129498097 + L1M4b LINE L1 5074 5464 -1493 * 2112 226 8 8 chr9 12773335 12773867 -129497577 + L1M4b LINE L1 5683 6214 -743 2146 101 23 4 chr9 12773873 12774382 -129497062 + L1PB1 LINE L1 5470 6151 0 2393 228 33 81 chr9 12774395 12774954 -129496490 + L1MB7 LINE L1 4646 5230 -954 2337 82 0 16 chr9 12774954 12775270 -129496174 + AluY SINE Alu 1 311 0 2393 228 33 81 chr9 12775270 12775383 -129496061 + L1MB7 LINE L1 5230 5347 -837 210 37 0 0 chr9 12775383 12775410 -129496034 + (CA)n Simple_repeat Simple_repeat 2 28 0 2393 228 33 81 chr9 12775410 12776352 -129495092 + L1MB7 LINE L1 5347 6184 0 545 265 107 28 chr9 12776344 12776736 -129494708 + L1M4c LINE L1 1921 2343 -4041 * 24 53 0 0 chr9 12776931 12776969 -129494475 + AT_rich Low_complexity Low_complexity 1 38 0 875 213 88 43 chr9 12777054 12777359 -129494085 - L1MC3 LINE L1 -1377 6802 6484 254 177 32 0 chr9 12777367 12777429 -129494015 - HSMAR2 DNA Mariner 0 1302 1239 4154 263 43 10 chr9 12777430 12779579 -129491865 - L1MC3 LINE L1 -743 5797 4135 1160 294 47 18 chr9 12779628 12780009 -129491435 - L1MC3 LINE L1 -5538 1002 611 225 65 0 0 chr9 12780091 12780122 -129491322 + (TG)n Simple_repeat Simple_repeat 2 32 0 304 163 125 12 chr9 12780142 12780222 -129491222 - L1MC3 LINE L1 -6175 365 277 225 108 0 0 chr9 12781030 12781067 -129490377 + (CA)n Simple_repeat Simple_repeat 2 38 0 265 188 38 25 chr9 12781518 12781598 -129489846 + (TTTA)n Simple_repeat Simple_repeat 2 82 0 207 0 0 0 chr9 12783029 12783052 -129488392 + (A)n Simple_repeat Simple_repeat 1 23 0 2371 72 3 28 chr9 12783195 12783514 -129487930 - AluY SINE Alu 0 311 1 219 69 0 0 chr9 12783783 12783812 -129487632 + (CA)n Simple_repeat Simple_repeat 2 30 0 2361 57 0 0 chr9 12784764 12785096 -129486348 + AluY SINE Alu 1 332 0 433 250 133 8 chr9 12785113 12785478 -129485966 + L1MC4 LINE L1 6188 6560 -1248 279 0 0 0 chr9 12785478 12785509 -129485935 + (CA)n Simple_repeat Simple_repeat 2 32 0 433 250 133 8 chr9 12785509 12785553 -129485891 + L1MC4 LINE L1 6560 6597 -1211 899 223 83 9 chr9 12785565 12786035 -129485409 + MER34 LTR ERV1 13 542 0 288 53 0 0 chr9 12786035 12786073 -129485371 + (TG)n Simple_repeat Simple_repeat 2 39 0 254 284 40 0 chr9 12786082 12786156 -129485288 + L1MC4 LINE L1 6743 6819 -1223 * 3912 209 13 23 chr9 12786141 12787131 -129484313 + L1 LINE L1 4154 5133 -1013 3119 251 48 31 chr9 12787126 12788205 -129483239 + L1MC4a LINE L1 6704 7800 -8 * 441 0 0 0 chr9 12788493 12788542 -129482902 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 307 264 203 56 chr9 12789290 12789383 -129482061 + MIR SINE MIR 37 115 -147 252 0 0 0 chr9 12789383 12789411 -129482033 + (TAA)n Simple_repeat Simple_repeat 1 28 0 307 264 203 56 chr9 12789411 12789514 -129481930 + MIR SINE MIR 115 262 0 2294 100 0 0 chr9 12790938 12791238 -129480206 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr9 12791346 12791366 -129480078 + (TG)n Simple_repeat Simple_repeat 2 21 0 231 217 22 0 chr9 12794394 12794440 -129477004 + CT-rich Low_complexity Low_complexity 5 51 0 8729 112 24 2 chr9 12794501 12795637 -129475807 - HSMAR1 DNA Mariner 0 1287 119 270 56 0 0 chr9 12795637 12795673 -129475771 + (CAA)n Simple_repeat Simple_repeat 2 37 0 8729 112 24 2 chr9 12795673 12795792 -129475652 - HSMAR1 DNA Mariner -1168 119 4 234 0 0 0 chr9 12796748 12796774 -129474670 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 810 196 76 73 chr9 12796941 12797216 -129474228 + MLT2D LTR ERVL 1 276 -138 188 103 51 0 chr9 12797459 12797498 -129473946 + CT-rich Low_complexity Low_complexity 3 43 0 2784 179 47 25 chr9 12798659 12799212 -129472232 - Tigger3b DNA MER2_type -666 565 1 1923 93 99 42 chr9 12799278 12799566 -129471878 + MER4D LTR ERV1 1 312 -591 4513 124 27 33 chr9 12799566 12800349 -129471095 - MER4E LTR ERV1 0 779 2 1923 93 99 42 chr9 12800349 12800392 -129471052 + MER4D LTR ERV1 312 351 -552 336 167 31 21 chr9 12800569 12800665 -129470779 + CT-rich Low_complexity Low_complexity 4 100 0 269 255 110 7 chr9 12801561 12801706 -129469738 - MER97b DNA MER1_type? -194 859 700 223 214 56 22 chr9 12802402 12802491 -129468953 + (CCCTG)n Simple_repeat Simple_repeat 5 96 0 720 163 23 0 chr9 12802932 12803061 -129468383 - FLAM_C SINE Alu -1 132 1 467 222 71 0 chr9 12803135 12803261 -129468183 - MER97c DNA MER1_type? -392 698 564 511 294 117 0 chr9 12803315 12803512 -129467932 - MIR SINE MIR -30 232 13 24 0 0 0 chr9 12804210 12804234 -129467210 + AT_rich Low_complexity Low_complexity 1 24 0 850 161 67 0 chr9 12804378 12804571 -129466873 - L1MA8 LINE L1 -2 6289 6084 1720 151 28 16 chr9 12805017 12805334 -129466110 - L1MA8 LINE L1 -185 6106 5786 792 163 101 17 chr9 12805334 12805512 -129465932 - Tigger1 DNA MER2_type 0 2418 2226 21 0 0 0 chr9 12805520 12805541 -129465903 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 12805843 12805864 -129465580 + AT_rich Low_complexity Low_complexity 1 21 0 1962 110 3 43 chr9 12806348 12806647 -129464797 - AluSq SINE Alu -26 287 1 244 316 26 0 chr9 12806848 12806924 -129464520 + MIR3 SINE MIR 85 162 -46 881 322 75 37 chr9 12807271 12807672 -129463772 - LTR16A LTR ERVL -9 441 26 357 357 14 0 chr9 12808262 12808405 -129463039 - LTR16A LTR ERVL 0 450 306 1411 127 4 48 chr9 12808482 12808710 -129462734 - AluSg/x SINE Alu -20 292 75 27 0 0 0 chr9 12809066 12809093 -129462351 + AT_rich Low_complexity Low_complexity 1 27 0 324 312 48 24 chr9 12809412 12809537 -129461907 - MIR SINE MIR -115 147 20 1310 185 4 0 chr9 12809537 12809775 -129461669 + L1MA7 LINE L1 5681 5919 -372 1571 177 52 33 chr9 12809782 12810149 -129461295 + THE1C LTR MaLR 1 374 -1 8188 154 39 36 chr9 12810157 12811627 -129459817 + THE1C-int LTR MaLR 3 1476 -104 221 56 0 28 chr9 12811627 12811663 -129459781 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7365 29 1 1 chr9 12811663 12813243 -129458201 - L1PA3 LINE L1 -24 6131 4552 531 106 15 121 chr9 12813236 12813307 -129458137 + THE1C-int LTR MaLR 1463 1515 -65 * 1609 115 0 21 chr9 12813307 12813542 -129457902 - AluSg/x SINE Alu -4 308 79 531 106 15 121 chr9 12813542 12813602 -129457842 + THE1C-int LTR MaLR 1515 1580 0 1717 158 65 14 chr9 12813604 12813959 -129457485 + THE1C LTR MaLR 3 375 0 1575 193 40 0 chr9 12813959 12814311 -129457133 + L1MA7 LINE L1 5924 6289 -2 2163 124 0 0 chr9 12814461 12814759 -129456685 + AluSq SINE Alu 1 298 -15 2169 112 0 3 chr9 12815688 12815992 -129455452 + AluSg SINE Alu 5 307 -3 262 267 130 74 chr9 12816519 12816789 -129454655 - L1ME3 LINE L1 -150 6081 5797 266 237 96 59 chr9 12817105 12817240 -129454204 + MLT1H LTR MaLR 410 549 0 744 278 101 9 chr9 12817265 12817611 -129453833 - L1ME3 LINE L1 -470 5761 5384 14680 57 2 2 chr9 12817615 12820271 -129451173 - L1PA5 LINE L1 -13 6141 3486 2668 68 0 0 chr9 12820272 12820641 -129450803 + L1P LINE L1 3061 3429 -2717 * 21642 66 7 5 chr9 12820636 12823983 -129447461 - L1PA5 LINE L1 -322 5832 2479 1651 186 27 0 chr9 12824358 12824654 -129446790 - AluJb SINE Alu -8 304 1 1083 303 99 19 chr9 12825006 12826068 -129445376 - L1ME3 LINE L1 -1828 4387 3241 * 1797 289 69 47 chr9 12826065 12827454 -129443990 - L1ME3 LINE L1 -3950 2446 1027 1459 310 67 24 chr9 12827500 12828314 -129443130 - L1ME3 LINE L1 -5449 947 91 4759 43 2 0 chr9 12828314 12828896 -129442548 - L1PA5 LINE L1 -1 6153 5571 1459 310 67 24 chr9 12828896 12828956 -129442488 - L1ME3 LINE L1 -6305 91 35 830 348 81 3 chr9 12829307 12829666 -129441778 - L1MEc LINE L1 -5876 520 134 21 89 0 0 chr9 12829666 12829722 -129441722 + AT_rich Low_complexity Low_complexity 1 56 0 245 132 0 94 chr9 12829763 12829816 -129441628 - L1MEc LINE L1 -6294 102 55 369 291 163 26 chr9 12829839 12830639 -129440805 - L1MEc LINE L1 -3174 3041 2171 209 191 22 45 chr9 12830668 12830757 -129440687 + T-rich Low_complexity Low_complexity 6 92 0 197 383 8 17 chr9 12831639 12831759 -129439685 - L2 LINE L2 -925 2389 2271 2081 107 14 0 chr9 12832195 12832484 -129438960 - AluSc SINE Alu -16 293 1 30 0 0 0 chr9 12834651 12834681 -129436763 + AT_rich Low_complexity Low_complexity 1 30 0 266 241 46 0 chr9 12835189 12835276 -129436168 - MER58 DNA MER1_type -224 117 27 216 0 0 0 chr9 12837463 12837487 -129433957 + (TG)n Simple_repeat Simple_repeat 2 25 0 3106 188 29 9 chr9 12838249 12838905 -129432539 - L1MB1 LINE L1 -9 6159 5491 31 88 0 0 chr9 12839411 12839491 -129431953 + AT_rich Low_complexity Low_complexity 1 80 0 793 289 46 18 chr9 12840931 12841211 -129430233 - MLT1G LTR MaLR 0 590 303 185 255 43 0 chr9 12841876 12841923 -129429521 - L2 LINE L2 -5 3267 3219 183 42 0 0 chr9 12841988 12842012 -129429432 + (CA)n Simple_repeat Simple_repeat 1 24 0 349 191 22 38 chr9 12842152 12842335 -129429109 + (TA)n Simple_repeat Simple_repeat 1 180 0 1827 170 3 13 chr9 12842412 12842723 -129428721 + AluSx SINE Alu 3 310 -2 2849 268 55 51 chr9 12843094 12843323 -129428121 + L1M4 LINE L1 33 259 -6283 2101 125 0 13 chr9 12843323 12843635 -129427809 + AluSq SINE Alu 1 308 -5 2849 268 55 51 chr9 12843635 12844549 -129426895 + L1M4 LINE L1 259 1181 -5361 303 192 20 50 chr9 12844550 12844649 -129426795 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 263 165 35 41 chr9 12844663 12844833 -129426611 + (TA)n Simple_repeat Simple_repeat 1 169 0 10962 234 35 16 chr9 12844910 12848826 -129422618 - L1M2 LINE L1 -522 7209 3213 22 66 0 40 chr9 12848831 12848907 -129422537 + AT_rich Low_complexity Low_complexity 1 73 0 28373 40 2 0 chr9 12848913 12853222 -129418222 - L1PA3 LINE L1 -11 6144 1827 1220 257 18 33 chr9 12853218 12853698 -129417746 - L1M2 LINE L1 -4166 3400 2728 * 10300 228 53 49 chr9 12853712 12854279 -129417165 - L1MA6 LINE L1 0 7719 7156 198 0 0 0 chr9 12854279 12854301 -129417143 + (TA)n Simple_repeat Simple_repeat 1 22 0 10300 228 53 49 chr9 12854301 12856450 -129414994 - L1MA6 LINE L1 -563 7156 5019 1539 202 121 5 chr9 12856450 12856831 -129414613 + MSTB LTR MaLR 1 425 -1 10300 228 53 49 chr9 12856831 12859350 -129412094 - L1MA6 LINE L1 -2700 5019 2527 243 253 13 27 chr9 12859700 12859775 -129411669 - MIR SINE MIR -110 152 79 261 320 40 58 chr9 12861235 12861397 -129410047 + MIR SINE MIR 37 188 -67 1935 67 0 0 chr9 12862021 12862259 -129409185 + AluY SINE Alu 1 238 -73 2120 217 50 9 chr9 12862259 12862896 -129408548 - L1 LINE L1 -2606 3540 2140 1297 251 109 7 chr9 12862975 12863378 -129408066 + L1 LINE L1 2420 2863 -3283 251 29 59 0 chr9 12863384 12863418 -129408026 + L1PA3 LINE L1 4206 4241 -1905 6772 113 18 10 chr9 12863421 12865070 -129406374 + L1PA3 LINE L1 4517 6181 0 755 198 78 5 chr9 12865070 12865262 -129406182 + L1MC4 LINE L1 7697 7902 -140 1260 96 0 0 chr9 12865279 12865445 -129405999 + AluSq SINE Alu 40 205 -108 29 47 0 0 chr9 12865466 12865509 -129405935 + AT_rich Low_complexity Low_complexity 1 43 0 277 240 0 0 chr9 12865509 12865559 -129405885 + L2 LINE L2 3256 3305 -8 345 239 19 31 chr9 12865822 12865981 -129405463 + (TA)n Simple_repeat Simple_repeat 2 158 0 21 0 0 0 chr9 12867249 12867270 -129404174 + AT_rich Low_complexity Low_complexity 1 21 0 334 351 154 10 chr9 12867451 12867659 -129403785 - MIR SINE MIR -11 251 14 192 333 56 42 chr9 12868198 12868342 -129403102 + MIR SINE MIR 1 146 -116 241 356 48 14 chr9 12868739 12868885 -129402559 + MIR SINE MIR 20 170 -92 242 217 17 0 chr9 12868925 12868985 -129402459 + (CAT)n Simple_repeat Simple_repeat 2 62 0 22 0 0 0 chr9 12869387 12869409 -129402035 + AT_rich Low_complexity Low_complexity 1 22 0 396 206 28 37 chr9 12870849 12870956 -129400488 - FLAM_A SINE Alu -8 125 20 1491 219 0 0 chr9 12871347 12871626 -129399818 + AluJb SINE Alu 2 280 -32 784 117 7 7 chr9 12871628 12871765 -129399679 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 629 191 30 6 chr9 12871804 12871972 -129399472 + GA-rich Low_complexity Low_complexity 1 172 0 1997 110 21 27 chr9 12874569 12874897 -129396547 + L1PA13 LINE L1 5835 6160 -3 1492 203 13 19 chr9 12875029 12875340 -129396104 + AluJo SINE Alu 1 309 -3 222 111 44 22 chr9 12875757 12875802 -129395642 + A-rich Low_complexity Low_complexity 2 47 0 251 191 16 0 chr9 12875880 12875943 -129395501 + GA-rich Low_complexity Low_complexity 3 66 0 478 113 0 0 chr9 12876464 12876526 -129394918 - MER8 DNA MER2_type -4 235 174 2243 158 49 7 chr9 12876530 12876940 -129394504 + Tigger2 DNA MER2_type 2292 2718 0 423 0 0 0 chr9 12879046 12879093 -129392351 + (CA)n Simple_repeat Simple_repeat 2 48 0 204 67 0 0 chr9 12879670 12879700 -129391744 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2059 116 0 0 chr9 12879704 12879979 -129391465 - AluSg SINE Alu -35 275 1 1426 281 50 88 chr9 12879979 12881549 -129389895 - L1PA12 LINE L1 -4978 2603 9 329 300 61 70 chr9 12881558 12881788 -129389656 + HAL1 LINE L1 1351 1578 -929 193 296 0 0 chr9 12881789 12881833 -129389611 + MIR SINE MIR 80 123 -139 1365 194 18 37 chr9 12882551 12882824 -129388620 + AluJb SINE Alu 1 268 -44 196 30 61 0 chr9 12882834 12882867 -129388577 + (TAA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr9 12883194 12883219 -129388225 + AT_rich Low_complexity Low_complexity 1 25 0 1721 147 4 0 chr9 12883396 12883648 -129387796 + AluSx SINE Alu 7 259 -53 272 371 18 24 chr9 12883760 12883927 -129387517 - Zaphod DNA AcHobo -3857 174 9 2273 84 0 3 chr9 12885027 12885324 -129386120 - AluY SINE Alu -15 296 1 34 65 0 0 chr9 12885452 12885514 -129385930 + AT_rich Low_complexity Low_complexity 1 62 0 261 309 53 32 chr9 12885994 12886088 -129385356 + MIR3 SINE MIR 10 105 -103 1508 134 9 0 chr9 12887268 12887491 -129383953 - AluSq SINE Alu -84 229 5 242 246 138 82 chr9 12887899 12887946 -129383498 - MIR SINE MIR -49 213 170 1821 143 50 61 chr9 12887946 12888325 -129383119 - THE1C LTR MaLR 0 375 1 242 246 138 82 chr9 12888325 12888472 -129382972 - MIR SINE MIR -92 170 8 2304 98 10 0 chr9 12888783 12889089 -129382355 + AluY SINE Alu 1 309 -2 200 321 18 37 chr9 12889133 12889242 -129382202 + L2 LINE L2 2292 2398 -916 224 319 112 26 chr9 12890063 12890179 -129381265 + L2 LINE L2 3184 3309 -4 198 0 0 0 chr9 12893124 12893146 -129378298 + (TA)n Simple_repeat Simple_repeat 1 22 0 315 0 0 0 chr9 12893483 12893518 -129377926 + (CA)n Simple_repeat Simple_repeat 2 36 0 255 31 0 0 chr9 12893523 12893555 -129377889 + (TA)n Simple_repeat Simple_repeat 2 33 0 276 336 19 19 chr9 12894220 12894324 -129377120 - MIR SINE MIR -63 145 42 294 222 11 78 chr9 12896466 12896556 -129374888 + MIR3 SINE MIR 119 202 -6 2054 224 50 47 chr9 12896586 12896956 -129374488 - MER92B LTR ERV1 0 636 262 1713 193 21 19 chr9 12896956 12897330 -129374114 + THE1C LTR MaLR 1 375 0 2054 224 50 47 chr9 12897330 12897593 -129373851 - MER92B LTR ERV1 -374 262 1 402 21 0 0 chr9 12897881 12897928 -129373516 + (TG)n Simple_repeat Simple_repeat 2 48 0 327 49 0 0 chr9 12897966 12898007 -129373437 + (TG)n Simple_repeat Simple_repeat 2 42 0 215 205 0 0 chr9 12898297 12898336 -129373108 + (CA)n Simple_repeat Simple_repeat 2 40 0 41 58 0 0 chr9 12898872 12898941 -129372503 + AT_rich Low_complexity Low_complexity 1 69 0 3780 138 26 5 chr9 12899079 12899701 -129371743 + MER41B LTR ERV1 1 635 0 210 333 48 0 chr9 12899710 12899773 -129371671 + MIR SINE MIR 24 89 -173 22 0 0 0 chr9 12899776 12899798 -129371646 + AT_rich Low_complexity Low_complexity 1 22 0 1963 134 10 26 chr9 12899804 12900111 -129371333 + AluSx SINE Alu 1 302 -10 251 273 15 0 chr9 12900197 12900263 -129371181 - MER67D LTR ERV1 -8 506 440 3940 135 21 6 chr9 12900264 12900899 -129370545 - MER39B LTR ERV1 0 630 1 228 298 0 71 chr9 12900899 12900977 -129370467 - MER67D LTR ERV1 -87 427 356 1330 180 38 64 chr9 12900988 12901368 -129370076 - MER67C LTR ERV1 -271 243 1 183 256 0 0 chr9 12901577 12901616 -129369828 + MIR SINE MIR 203 241 -21 257 282 122 35 chr9 12903798 12904025 -129367419 - L1M2 LINE L1 -570 5584 5392 1702 227 78 49 chr9 12904526 12905348 -129366096 - L1MDa LINE L1 -3922 2618 1763 384 22 0 0 chr9 12905985 12906030 -129365414 + (TA)n Simple_repeat Simple_repeat 1 45 0 279 221 11 21 chr9 12906105 12906200 -129365244 + (TA)n Simple_repeat Simple_repeat 1 94 0 939 275 67 11 chr9 12906208 12906657 -129364787 - MLT1H LTR MaLR -24 525 12 273 210 8 48 chr9 12906679 12906803 -129364641 + T-rich Low_complexity Low_complexity 4 122 0 21 0 0 0 chr9 12907343 12907364 -129364080 + AT_rich Low_complexity Low_complexity 1 21 0 1245 238 83 17 chr9 12907949 12908298 -129363146 + L1MC2 LINE L1 5952 6323 -21 328 286 24 18 chr9 12908308 12908476 -129362968 - Charlie5 DNA MER1_type -1933 679 511 454 248 145 21 chr9 12909882 12910164 -129361280 - Charlie4a DNA MER1_type -7 501 185 390 318 31 8 chr9 12910663 12910792 -129360652 - L2 LINE L2 -2 3270 3139 745 183 12 24 chr9 12911465 12911629 -129359815 + AluSg/x SINE Alu 119 280 -32 22 0 0 0 chr9 12912047 12912069 -129359375 + AT_rich Low_complexity Low_complexity 1 22 0 1569 218 76 51 chr9 12913456 12913906 -129357538 + MLT1C LTR MaLR 7 467 0 24 0 0 0 chr9 12914105 12914129 -129357315 + AT_rich Low_complexity Low_complexity 1 24 0 1246 203 88 30 chr9 12914719 12915049 -129356395 + THE1C LTR MaLR 1 349 -26 24 32 0 0 chr9 12915075 12915106 -129356338 + AT_rich Low_complexity Low_complexity 1 31 0 576 261 67 75 chr9 12915540 12915793 -129355651 - AluJo SINE Alu -23 289 39 1002 313 40 13 chr9 12915810 12916353 -129355091 - L1 LINE L1 -3125 3021 2464 906 182 42 42 chr9 12916866 12917058 -129354386 - AluJb SINE Alu -11 301 110 3629 173 50 8 chr9 12917059 12917408 -129354036 - L1MA8 LINE L1 -324 5967 5634 234 0 0 0 chr9 12917408 12917434 -129354010 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3629 173 50 8 chr9 12917434 12918150 -129353294 - L1MA8 LINE L1 -657 5634 4857 279 321 27 27 chr9 12918271 12918458 -129352986 - L1 LINE L1 -3324 2822 2636 540 303 27 90 chr9 12918531 12918782 -129352662 + L1M4 LINE L1 13 221 -6321 1618 140 0 0 chr9 12918782 12919060 -129352384 + AluYa5 SINE Alu 28 305 -6 540 303 27 90 chr9 12919060 12919286 -129352158 + L1M4 LINE L1 221 460 -6082 1582 206 57 40 chr9 12919585 12919988 -129351456 + MER77 LTR ERV1 196 605 0 409 242 8 32 chr9 12920723 12920847 -129350597 - L1M4 LINE L1 -6420 122 2 2181 269 79 24 chr9 12920900 12922025 -129349419 + L1M4 LINE L1 3125 4311 -2333 678 80 0 10 chr9 12922798 12922898 -129348546 + AluY SINE Alu 195 293 -18 234 227 21 10 chr9 12922935 12923032 -129348412 + (TA)n Simple_repeat Simple_repeat 2 99 0 1125 255 35 22 chr9 12924599 12924917 -129346527 + Charlie1b DNA MER1_type 1 322 -201 291 243 40 0 chr9 12924998 12925072 -129346372 + Charlie1b DNA MER1_type 442 518 -5 23 54 0 0 chr9 12925649 12925686 -129345758 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr9 12925753 12925794 -129345650 + AT_rich Low_complexity Low_complexity 1 41 0 196 326 43 22 chr9 12927035 12927127 -129344317 + MIR SINE MIR 58 151 -57 1185 188 87 7 chr9 12927444 12927720 -129343724 - L1MC/D LINE L1 -600 5733 5436 671 192 150 21 chr9 12927795 12927917 -129343527 - L1MA4 LINE L1 -15 6285 6180 1826 153 17 3 chr9 12927917 12928218 -129343226 - AluSx SINE Alu -7 305 1 671 192 150 21 chr9 12928218 12928288 -129343156 - L1MA4 LINE L1 -120 6180 6068 1061 256 37 48 chr9 12928293 12928886 -129342558 - L1MC/D LINE L1 -743 5403 4811 368 244 53 0 chr9 12928886 12929017 -129342427 - L1MA7 LINE L1 -2 6289 4791 12201 42 2 2 chr9 12929445 12930977 -129340467 - L1P LINE L1 -1090 5056 3525 540 232 76 35 chr9 12930977 12931175 -129340269 + L1MC4 LINE L1 7697 7902 -140 226 118 0 0 chr9 12931192 12931226 -129340218 + AluJo SINE Alu 40 73 -230 2728 33 0 0 chr9 12931229 12931560 -129339884 + L1P LINE L1 2696 3026 -3120 559 228 146 67 chr9 12931544 12931798 -129339646 - L1MC4 LINE L1 -323 7719 7446 * 388 207 0 0 chr9 12931818 12931905 -129339539 - L1MA5 LINE L1 -12 6288 6202 1422 183 71 13 chr9 12931905 12932385 -129339059 + L1M1 LINE L1 5100 5603 -697 358 261 23 39 chr9 12932407 12932537 -129338907 - MIR SINE MIR -68 194 67 3375 148 74 5 chr9 12933773 12934383 -129337061 - MER39B LTR ERV1 0 653 2 1380 318 110 58 chr9 12934994 12935836 -129335608 + L1ME3A LINE L1 857 1654 -4909 1914 141 0 7 chr9 12935836 12936120 -129335324 + AluSx SINE Alu 2 283 -29 324 0 0 0 chr9 12936127 12936163 -129335281 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1380 318 110 58 chr9 12936163 12936684 -129334760 + L1ME3A LINE L1 1659 2463 -4100 198 0 0 0 chr9 12936819 12936841 -129334603 + (CA)n Simple_repeat Simple_repeat 2 23 0 604 354 42 20 chr9 12937560 12938033 -129333411 + L1ME3A LINE L1 5622 6117 -289 1177 182 19 0 chr9 12938320 12938529 -129332915 + AluJo SINE Alu 83 295 -17 255 259 74 0 chr9 12938533 12938614 -129332830 - L1MC4 LINE L1 -1342 6700 6614 254 302 23 0 chr9 12938541 12938627 -129332817 + L1MC4 LINE L1 6615 6702 -1340 * 298 235 47 0 chr9 12938628 12938713 -129332731 + L1MC4 LINE L1 6614 6702 -1340 240 226 38 0 chr9 12938725 12938778 -129332666 + GA-rich Low_complexity Low_complexity 2 56 0 2327 195 13 7 chr9 12939233 12939689 -129331755 + MER65C LTR ERV1 3 461 0 205 146 42 0 chr9 12939743 12939791 -129331653 + (TA)n Simple_repeat Simple_repeat 2 51 0 319 193 0 0 chr9 12940981 12941038 -129330406 + AluS SINE Alu 1 57 -242 316 260 0 60 chr9 12941043 12941193 -129330251 - L1MC4 LINE L1 -1338 6704 6614 497 218 6 0 chr9 12941197 12941367 -129330077 + (TA)n Simple_repeat Simple_repeat 2 172 0 32 0 0 0 chr9 12941370 12941402 -129330042 + AT_rich Low_complexity Low_complexity 1 32 0 334 178 22 0 chr9 12941548 12941638 -129329806 + GA-rich Low_complexity Low_complexity 3 94 0 759 157 36 0 chr9 12941677 12941843 -129329601 + GA-rich Low_complexity Low_complexity 1 172 0 326 209 0 81 chr9 12941945 12942031 -129329413 + HsTC2 DNA Tc2 1 79 -1819 191 305 106 57 chr9 12942137 12942278 -129329166 + MIR SINE MIR 9 156 -106 225 0 0 0 chr9 12942803 12942828 -129328616 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2625 38 0 3 chr9 12942828 12943145 -129328299 - L1PA3 LINE L1 -18 6137 5822 4405 24 1 0 chr9 12943145 12943716 -129327728 + L1P1 LINE L1 4860 5431 -724 300 352 28 11 chr9 12943747 12943923 -129327521 + L2 LINE L2 1303 1481 -1833 338 304 89 0 chr9 12944307 12944442 -129327002 - MLT1J1 LTR MaLR -299 147 1 781 335 67 61 chr9 12944442 12945161 -129326283 - L2 LINE L2 -2591 723 1 337 109 91 0 chr9 12945497 12945552 -129325892 + L1PA12 LINE L1 2535 2594 -4987 8499 140 19 9 chr9 12945562 12947783 -129323661 - L1PA10 LINE L1 -11 6157 3962 2255 103 0 7 chr9 12947783 12948085 -129323359 - AluSg SINE Alu -10 300 1 8499 140 19 9 chr9 12948085 12948148 -129323296 - L1PA10 LINE L1 -2206 3962 3901 516 330 161 43 chr9 12948164 12948999 -129322445 + L2 LINE L2 1851 2783 -531 240 307 69 63 chr9 12949245 12949434 -129322010 + L2 LINE L2 3082 3271 -42 522 0 0 0 chr9 12950174 12950232 -129321212 + (TA)n Simple_repeat Simple_repeat 2 59 0 1681 140 52 55 chr9 12950695 12951060 -129320384 + THE1B LTR MaLR 1 364 0 23 68 0 0 chr9 12951417 12951461 -129319983 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr9 12951957 12951995 -129319449 + AT_rich Low_complexity Low_complexity 1 38 0 1788 239 46 5 chr9 12952074 12952513 -129318931 + MER74C LTR ERVL 4 460 0 527 232 43 23 chr9 12952612 12952817 -129318627 - MER61D LTR ERV1 -17 744 340 633 299 35 44 chr9 12953190 12953745 -129317699 - MER51-int LTR ERV1 -1 8254 6776 302 200 0 0 chr9 12953886 12953941 -129317503 - MER51-int LTR ERV1 -274 7542 7488 1356 251 62 6 chr9 12954296 12954619 -129316825 - MER51-int LTR ERV1 -3671 3420 3080 243 103 0 0 chr9 12955576 12955615 -129315829 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 254 250 0 0 chr9 12955616 12955672 -129315772 + CT-rich Low_complexity Low_complexity 2 57 0 426 20 0 0 chr9 12955672 12955723 -129315721 + (CA)n Simple_repeat Simple_repeat 1 51 0 44 84 0 0 chr9 12957275 12957382 -129314062 + AT_rich Low_complexity Low_complexity 1 107 0 21 82 0 0 chr9 12957724 12957773 -129313671 + AT_rich Low_complexity Low_complexity 1 49 0 270 116 0 0 chr9 12957983 12958026 -129313418 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 1704 322 111 20 chr9 12958434 12959371 -129312073 - L2 LINE L2 -353 2961 1940 225 403 42 21 chr9 12959547 12959738 -129311706 - MIR SINE MIR -2 260 66 384 323 31 8 chr9 12959945 12960075 -129311369 + L2 LINE L2 3139 3271 -1 254 306 83 9 chr9 12960514 12960622 -129310822 + L1MDb LINE L1 142 257 -6286 29225 43 2 1 chr9 12960667 12965105 -129306339 + L1PA4 LINE L1 1714 6155 0 1585 216 118 60 chr9 12965102 12965832 -129305612 + L1MDb LINE L1 1180 1951 -4589 * 21 57 0 0 chr9 12965871 12965906 -129305538 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr9 12965976 12966014 -129305430 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr9 12966082 12966120 -129305324 + AT_rich Low_complexity Low_complexity 1 38 0 330 343 50 22 chr9 12966359 12966540 -129304904 + MIR SINE MIR 46 231 -31 833 190 80 6 chr9 12968489 12968652 -129302792 - FAM SINE Alu 0 175 1 21 0 0 0 chr9 12969891 12969912 -129301532 + AT_rich Low_complexity Low_complexity 1 21 0 273 210 8 48 chr9 12970452 12970576 -129300868 + A-rich Low_complexity Low_complexity 4 122 0 957 283 84 10 chr9 12970598 12970909 -129300535 + MLT1H LTR MaLR 12 345 -204 233 237 0 0 chr9 12971053 12971112 -129300332 - L1MC4 LINE L1 -1344 6698 6640 * 264 169 34 0 chr9 12971060 12971119 -129300325 + L1MC4 LINE L1 6640 6700 -1342 240 86 0 0 chr9 12971169 12971204 -129300240 + (CA)n Simple_repeat Simple_repeat 2 36 0 366 274 112 45 chr9 12971558 12971737 -129299707 + LTR67 LTR ERVL 367 557 0 261 277 80 62 chr9 12972113 12972225 -129299219 + L2 LINE L2 3199 3312 -1 342 0 0 0 chr9 12972320 12972358 -129299086 + (CA)n Simple_repeat Simple_repeat 2 39 0 3732 166 20 22 chr9 12973627 12974369 -129297075 - L1MA4 LINE L1 -13 6287 5547 22 0 0 0 chr9 12974505 12974527 -129296917 + AT_rich Low_complexity Low_complexity 1 22 0 8404 159 15 2 chr9 12975225 12976637 -129294807 - Tigger1 DNA MER2_type 0 2418 989 388 346 62 44 chr9 12976733 12977054 -129294390 + MLT1H LTR MaLR 17 343 -206 29 0 0 0 chr9 12977339 12977368 -129294076 + AT_rich Low_complexity Low_complexity 1 29 0 302 365 161 19 chr9 12977642 12977853 -129293591 - MIR SINE MIR -12 250 10 194 337 60 12 chr9 12978468 12978551 -129292893 + MIR SINE MIR 26 112 -150 25 31 0 0 chr9 12979081 12979113 -129292331 + AT_rich Low_complexity Low_complexity 1 32 0 441 36 0 0 chr9 12980843 12980898 -129290546 + (CA)n Simple_repeat Simple_repeat 2 56 0 744 134 0 0 chr9 12980912 12981024 -129290420 - AluSg/x SINE Alu -17 295 184 2018 137 0 0 chr9 12981718 12982011 -129289433 + AluSg SINE Alu 1 293 -17 438 53 0 0 chr9 12982028 12982085 -129289359 + (TG)n Simple_repeat Simple_repeat 2 58 0 1363 127 0 19 chr9 12983724 12983929 -129287515 - AluSg/x SINE Alu -20 292 92 9783 190 28 74 chr9 12984486 12985044 -129286400 + L1MA5 LINE L1 2464 3046 -3254 801 242 68 57 chr9 12985044 12985292 -129286152 + AluJo SINE Alu 39 289 -23 9783 190 28 74 chr9 12985292 12988168 -129283276 + L1MA5 LINE L1 3046 5944 -356 2044 109 0 7 chr9 12988168 12988461 -129282983 + AluSx SINE Alu 1 291 -21 9783 190 28 74 chr9 12988461 12988803 -129282641 + L1MA5 LINE L1 5944 6300 0 218 366 128 26 chr9 12988865 12989092 -129282352 + L2 LINE L2 1459 1708 -1606 325 197 23 3 chr9 12989340 12989416 -129282028 + MSTA LTR MaLR 1 78 -354 3771 195 30 62 chr9 12989639 12990833 -129280611 + L1PA13 LINE L1 1540 2728 -4069 3297 149 2 23 chr9 12990845 12991163 -129280281 + L1PA15 LINE L1 5594 5896 -269 2128 123 3 0 chr9 12991163 12991472 -129279972 + AluSg SINE Alu 1 310 0 3297 149 2 23 chr9 12991472 12991715 -129279729 + L1PA15 LINE L1 5896 6143 -22 27 49 0 0 chr9 12992539 12992580 -129278864 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr9 12993406 12993430 -129278014 + AT_rich Low_complexity Low_complexity 1 24 0 1629 203 76 51 chr9 12993629 12994077 -129277367 - MLT1C LTR MaLR 0 467 9 454 254 104 67 chr9 12994314 12994660 -129276784 + LTR37A LTR ERV1 22 380 -46 582 311 28 6 chr9 12994660 12994840 -129276604 + L1MA8 LINE L1 375 558 -6095 * 1441 233 81 3 chr9 12994827 12995149 -129276295 + L1MA8 LINE L1 1134 1480 -5173 10728 208 26 22 chr9 12995154 12996824 -129274620 + L1MA8 LINE L1 3240 4903 -1974 7810 16 0 0 chr9 12996824 12997915 -129273529 + L1PA2 LINE L1 5062 6152 -3 2068 133 13 0 chr9 12997923 12998224 -129273220 + AluSx SINE Alu 1 305 -7 10728 208 26 22 chr9 12998224 13000291 -129271153 + L1MA8 LINE L1 4909 6874 -3 241 172 47 31 chr9 13000294 13000358 -129271086 + L1MA7 LINE L1 5993 6057 -234 715 161 65 11 chr9 13000359 13000545 -129270899 + L1MA7 LINE L1 6095 6290 -1 496 294 19 102 chr9 13000899 13001164 -129270280 - MIR SINE MIR -6 256 14 22 0 0 0 chr9 13002575 13002597 -129268847 + AT_rich Low_complexity Low_complexity 1 22 0 3864 180 42 45 chr9 13002640 13003267 -129268177 - L1MC1 LINE L1 0 6333 5708 1986 154 0 0 chr9 13003267 13003559 -129267885 - AluSx SINE Alu -20 292 1 3864 180 42 45 chr9 13003559 13003832 -129267612 - L1MC1 LINE L1 -625 5708 5436 714 181 150 21 chr9 13003907 13004029 -129267415 - L1MA4 LINE L1 -15 6285 6180 2107 120 17 3 chr9 13004029 13004330 -129267114 - AluSx SINE Alu -7 305 1 714 181 150 21 chr9 13004330 13004400 -129267044 - L1MA4 LINE L1 -120 6180 6068 1448 246 25 21 chr9 13004405 13004987 -129266457 - L1MC1 LINE L1 -743 5403 4857 405 221 53 0 chr9 13004992 13005123 -129266321 - L1MA7 LINE L1 -2 6289 6152 2368 288 11 34 chr9 13005167 13006365 -129265079 + L1PA13 LINE L1 1 1686 -5101 798 265 35 3 chr9 13006365 13006652 -129264792 - L1MC1 LINE L1 -3719 2427 2132 258 376 73 28 chr9 13007641 13008135 -129263309 + L2 LINE L2 1978 2493 -821 300 351 60 66 chr9 13008302 13008815 -129262629 + L2 LINE L2 2804 3313 0 31 76 0 0 chr9 13009023 13009089 -129262355 + AT_rich Low_complexity Low_complexity 1 66 0 33 25 0 0 chr9 13009147 13009187 -129262257 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr9 13009438 13009470 -129261974 + AT_rich Low_complexity Low_complexity 1 32 0 296 346 69 20 chr9 13009813 13010163 -129261281 + L1ME LINE L1 5362 5728 -393 294 95 0 0 chr9 13013098 13013140 -129258304 + (CA)n Simple_repeat Simple_repeat 1 42 0 258 268 84 26 chr9 13013445 13013635 -129257809 - HAL1 LINE L1 -61 2446 2246 50 18 0 0 chr9 13014761 13014818 -129256626 + AT_rich Low_complexity Low_complexity 1 57 0 243 224 20 10 chr9 13015497 13015595 -129255849 + (TA)n Simple_repeat Simple_repeat 1 99 0 678 80 0 10 chr9 13015632 13015732 -129255712 - AluY SINE Alu -18 293 195 1872 135 0 28 chr9 13016473 13016762 -129254682 + AluY SINE Alu 3 283 -28 1918 168 111 0 chr9 13016840 13017220 -129254224 - MSTB LTR MaLR 0 426 5 319 343 93 7 chr9 13017401 13017541 -129253903 - L1ME LINE L1 -337 5833 5682 1386 285 56 39 chr9 13017893 13018176 -129253268 + L1ME1 LINE L1 3566 3843 -2303 1801 149 79 22 chr9 13018176 13018531 -129252913 + THE1C LTR MaLR 1 375 0 1386 285 56 39 chr9 13018531 13019218 -129252226 + L1ME1 LINE L1 3843 4552 -1594 926 191 56 0 chr9 13019225 13019440 -129252004 + L1MA4 LINE L1 6068 6294 -6 2217 245 35 26 chr9 13019518 13020057 -129251387 + MLT2B3 LTR ERVL 1 544 -10 588 294 52 8 chr9 13020078 13020330 -129251114 + L1ME1 LINE L1 4605 4867 -1279 192 346 191 33 chr9 13020757 13021240 -129250204 - L2 LINE L2 -557 2757 2199 2014 218 62 19 chr9 13021256 13021774 -129249670 - MER90 LTR ERV1 0 614 75 265 290 0 0 chr9 13021845 13021907 -129249537 - MER90 LTR ERV1 -525 89 28 23 68 0 0 chr9 13022331 13022375 -129249069 + AT_rich Low_complexity Low_complexity 1 44 0 1937 144 13 3 chr9 13022936 13023235 -129248209 - AluSx SINE Alu -10 302 1 21 82 0 0 chr9 13024419 13024468 -129246976 + AT_rich Low_complexity Low_complexity 1 49 0 38 0 0 0 chr9 13024483 13024521 -129246923 + AT_rich Low_complexity Low_complexity 1 38 0 528 90 13 0 chr9 13024706 13024784 -129246660 + L1MB1 LINE L1 5336 5414 -769 2675 192 20 2 chr9 13024800 13025357 -129246087 + L1MB1 LINE L1 5591 6157 -11 225 0 0 0 chr9 13025357 13025382 -129246062 + (CA)n Simple_repeat Simple_repeat 1 25 0 389 349 123 21 chr9 13025395 13025965 -129245479 + HAL1 LINE L1 24 651 -1856 342 0 0 0 chr9 13026077 13026115 -129245329 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr9 13027174 13027195 -129244249 + AT_rich Low_complexity Low_complexity 1 21 0 348 171 43 0 chr9 13027477 13027547 -129243897 + L1ME LINE L1 5550 5622 -542 22 35 0 0 chr9 13027547 13027576 -129243868 + AT_rich Low_complexity Low_complexity 1 29 0 241 264 109 30 chr9 13027824 13028153 -129243291 + L1ME1 LINE L1 4947 5304 -842 908 254 75 20 chr9 13028198 13028674 -129242770 + L1ME1 LINE L1 5494 6103 -63 27064 128 23 72 chr9 13028773 13031577 -129239867 - L1PA8 LINE L1 -13 6159 3218 2097 102 13 25 chr9 13031577 13031891 -129239553 - AluSq SINE Alu -3 310 1 27064 128 23 72 chr9 13031891 13033116 -129238328 - L1PA8 LINE L1 -2954 3218 1934 2138 56 42 24 chr9 13033116 13033403 -129238041 + AluY SINE Alu 1 292 -19 27064 128 23 72 chr9 13033403 13035861 -129235583 - L1PA8 LINE L1 -4238 1934 9 6137 116 49 21 chr9 13035940 13037028 -129234416 - L1MA2 LINE L1 0 6304 5184 189 422 92 0 chr9 13037682 13037791 -129233653 + L2 LINE L2 3151 3269 -3 2139 99 7 10 chr9 13038489 13038793 -129232651 + AluSg SINE Alu 1 303 -7 21 36 0 0 chr9 13038968 13038996 -129232448 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 13039188 13039210 -129232234 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 13039561 13039596 -129231848 + AT_rich Low_complexity Low_complexity 1 35 0 378 0 0 0 chr9 13042032 13042074 -129229370 + (TG)n Simple_repeat Simple_repeat 2 43 0 2137 111 3 0 chr9 13042074 13042371 -129229073 - AluSg SINE Alu -12 298 1 1578 228 144 78 chr9 13042644 13043250 -129228194 - MLT1E1 LTR MaLR -8 646 1 808 268 47 33 chr9 13044323 13044789 -129226655 - Charlie1b DNA MER1_type -1 522 16 202 200 0 0 chr9 13045280 13045320 -129226124 + (CA)n Simple_repeat Simple_repeat 1 40 0 337 319 65 27 chr9 13045514 13045699 -129225745 + L1MEd LINE L1 904 1095 -5024 183 184 20 82 chr9 13045723 13045772 -129225672 - L2 LINE L2 -2630 684 639 627 280 99 35 chr9 13046381 13046613 -129224831 - MIR SINE MIR -14 248 2 337 321 78 45 chr9 13046670 13047028 -129224416 + L1 LINE L1 3977 4346 -1800 316 159 14 29 chr9 13047797 13047866 -129223578 + L1M1 LINE L1 5543 5610 -694 1237 212 43 96 chr9 13048690 13048881 -129222563 + MER110A LTR ERV1 5 205 -273 333 0 0 0 chr9 13048881 13048918 -129222526 + (CA)n Simple_repeat Simple_repeat 2 38 0 1237 212 43 96 chr9 13048918 13049251 -129222193 + MER110A LTR ERV1 205 470 -8 1847 99 72 0 chr9 13049573 13049835 -129221609 - AluSg SINE Alu -20 290 10 1514 186 27 27 chr9 13050210 13050506 -129220938 + AluJb SINE Alu 6 301 -11 1402 198 35 31 chr9 13050756 13051074 -129220370 - MLT1A1 LTR MaLR -46 319 1 1542 217 160 5 chr9 13051333 13051770 -129219674 + MLT1D LTR MaLR 1 505 0 385 280 21 0 chr9 13052008 13052101 -129219343 - MER81 DNA DNA 0 114 20 1242 228 120 7 chr9 13052197 13052631 -129218813 + Charlie4a DNA MER1_type 25 507 -1 1772 174 52 0 chr9 13054243 13054570 -129216874 - MER2 DNA MER2_type 0 344 1 304 253 63 11 chr9 13055518 13055613 -129215831 - MIR SINE MIR -162 100 1 2221 4 19 0 chr9 13055772 13056034 -129215410 + L1PA3 LINE L1 5889 6155 0 22 0 0 0 chr9 13056600 13056622 -129214822 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr9 13056663 13056695 -129214749 + AT_rich Low_complexity Low_complexity 1 32 0 1616 127 6 106 chr9 13056699 13057030 -129214414 + AluSx SINE Alu 2 299 -3 471 128 139 0 chr9 13057064 13057150 -129214294 + AluSg/x SINE Alu 207 304 -6 4892 160 50 16 chr9 13057166 13057830 -129213614 - L1MA7 LINE L1 -6 6285 5645 234 0 0 0 chr9 13057830 13057856 -129213588 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4892 160 50 16 chr9 13057856 13058601 -129212843 - L1MA7 LINE L1 -646 5645 4828 22 0 0 0 chr9 13059338 13059360 -129212084 + AT_rich Low_complexity Low_complexity 1 22 0 2267 230 54 17 chr9 13059514 13060105 -129211339 - L1MB7 LINE L1 -44 6140 5528 284 250 0 14 chr9 13062231 13062303 -129209141 - MER77 LTR ERV1 0 605 535 1703 209 45 76 chr9 13063042 13063530 -129207914 - MER77 LTR ERV1 0 605 133 2044 209 44 65 chr9 13063534 13063980 -129207464 + MLT2B1 LTR ERVL 3 438 -82 1868 182 23 8 chr9 13063980 13064376 -129207068 + L1MA5 LINE L1 5897 6298 -2 2044 209 44 65 chr9 13064376 13064456 -129206988 + MLT2B1 LTR ERVL 438 518 -2 410 269 43 50 chr9 13064456 13064594 -129206850 - MER77 LTR ERV1 -468 137 1 4460 254 59 57 chr9 13065106 13067910 -129203534 - L1M4c LINE L1 -3475 3169 260 2565 4 0 0 chr9 13067910 13068188 -129203256 - AluYa5 SINE Alu -6 305 28 4460 254 59 57 chr9 13068188 13068448 -129202996 - L1M4c LINE L1 -6384 260 2 4328 253 94 19 chr9 13068501 13070398 -129201046 + L1MC2 LINE L1 2627 4665 -1481 4146 184 99 6 chr9 13070464 13071350 -129200094 + L1MC2 LINE L1 5355 6323 -21 410 275 24 12 chr9 13071360 13071527 -129199917 - Charlie5 DNA MER1_type -1933 679 511 492 292 162 5 chr9 13072947 13073132 -129198312 - MIR SINE MIR -1 261 48 252 224 15 60 chr9 13073235 13073302 -129198142 - L2 LINE L2 -5 3267 3204 3447 183 58 36 chr9 13073402 13073523 -129197921 - L1MA7 LINE L1 -4 6287 6170 1676 161 7 33 chr9 13073523 13073827 -129197617 - AluJb SINE Alu -8 304 9 3447 183 58 36 chr9 13073827 13074546 -129196898 - L1MA7 LINE L1 -121 6170 5428 328 313 30 0 chr9 13074583 13074717 -129196727 - L1M3b LINE L1 -6139 142 5 816 139 51 126 chr9 13075407 13075653 -129195791 + AluJb SINE Alu 87 316 0 370 95 53 0 chr9 13075934 13076029 -129195415 + (TA)n Simple_repeat Simple_repeat 2 101 0 307 272 126 19 chr9 13076285 13076388 -129195056 - L2 LINE L2 -7 3306 3193 187 367 11 11 chr9 13076684 13076774 -129194670 + L2 LINE L2 3183 3272 0 204 350 49 28 chr9 13076779 13076922 -129194522 + MIR SINE MIR 8 153 -109 206 99 89 10 chr9 13078097 13078198 -129193246 + (TA)n Simple_repeat Simple_repeat 2 110 0 182 225 75 0 chr9 13078284 13078324 -129193120 + L2 LINE L2 3268 3310 -3 186 308 25 83 chr9 13079693 13079813 -129191631 + MIR SINE MIR 75 187 -75 183 264 0 19 chr9 13079857 13079910 -129191534 - MIR SINE MIR -2 260 209 360 0 0 0 chr9 13079914 13079954 -129191490 + (TA)n Simple_repeat Simple_repeat 1 40 0 24 53 0 0 chr9 13080671 13080709 -129190735 + AT_rich Low_complexity Low_complexity 1 38 0 522 0 0 0 chr9 13080867 13080925 -129190519 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 1374 189 4 8 chr9 13080941 13081190 -129190254 - AluJo SINE Alu -64 248 1 192 40 0 0 chr9 13082870 13082895 -129188549 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 34 55 0 0 chr9 13083068 13083123 -129188321 + AT_rich Low_complexity Low_complexity 1 55 0 278 281 26 26 chr9 13084165 13084279 -129187165 + L1ME LINE L1 5696 5809 -312 198 0 0 0 chr9 13085804 13085826 -129185618 + (CA)n Simple_repeat Simple_repeat 2 23 0 30 0 0 0 chr9 13085880 13085910 -129185534 + AT_rich Low_complexity Low_complexity 1 30 0 2005 110 7 24 chr9 13085950 13086240 -129185204 - AluSg SINE Alu -12 298 14 307 271 82 35 chr9 13086405 13086575 -129184869 + L1ME4a LINE L1 5769 5946 -175 1125 252 117 10 chr9 13086800 13087273 -129184171 + Charlie1b DNA MER1_type 1 518 -5 22 56 0 0 chr9 13087851 13087887 -129183557 + AT_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr9 13087954 13087995 -129183449 + AT_rich Low_complexity Low_complexity 1 41 0 540 256 150 11 chr9 13088275 13088455 -129182989 - MER58C DNA MER1_type -10 205 1 24 67 0 0 chr9 13088540 13088585 -129182859 + AT_rich Low_complexity Low_complexity 1 45 0 249 210 0 0 chr9 13088800 13088862 -129182582 + GA-rich Low_complexity Low_complexity 2 63 0 228 281 0 0 chr9 13089494 13089558 -129181886 + L1ME LINE L1 5727 5790 -331 * 756 203 18 16 chr9 13089556 13089749 -129181695 + L1MC3 LINE L1 6137 6326 -18 567 283 106 1 chr9 13090434 13090637 -129180807 - MIR SINE MIR -1 261 38 204 67 0 0 chr9 13091120 13091150 -129180294 + (A)n Simple_repeat Simple_repeat 1 30 0 237 119 0 0 chr9 13092830 13092872 -129178572 + (TC)n Simple_repeat Simple_repeat 2 43 0 1194 108 0 17 chr9 13093546 13093722 -129177722 - AluSg/x SINE Alu 0 312 140 1533 198 38 25 chr9 13093727 13094041 -129177403 + MLT1A1 LTR MaLR 48 365 0 233 260 87 8 chr9 13094762 13094889 -129176555 + L1MB8 LINE L1 2896 3032 -3114 3046 242 57 36 chr9 13094917 13097096 -129174348 + L1MB8 LINE L1 3923 6163 -15 21 36 0 0 chr9 13097224 13097252 -129174192 + AT_rich Low_complexity Low_complexity 1 28 0 524 316 161 0 chr9 13097379 13097597 -129173847 - MIR SINE MIR -3 259 7 9467 178 30 20 chr9 13097991 13102421 -129169023 - L1PBa LINE L1 -1546 5316 620 438 211 19 0 chr9 13102406 13102510 -129168934 - L1PBa LINE L1 -6668 195 90 * 3174 208 91 70 chr9 13102611 13103385 -129168059 - L1 LINE L1 -1515 4631 3875 6313 124 9 10 chr9 13103385 13104355 -129167089 - LTR5 LTR ERVK 0 969 1 207 0 0 0 chr9 13104356 13104379 -129167065 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1871 138 4 0 chr9 13104380 13104655 -129166789 - AluSg SINE Alu -32 278 3 3174 208 91 70 chr9 13104655 13105443 -129166001 - L1 LINE L1 -2270 3876 2750 * 4301 74 6 0 chr9 13105441 13106124 -129165320 + L1PA7 LINE L1 5143 5828 -326 1963 92 4 18 chr9 13106125 13106397 -129165047 + AluY SINE Alu 43 310 -1 1351 82 0 0 chr9 13106398 13106568 -129164876 + AluY SINE Alu 123 292 -19 2405 78 3 14 chr9 13106568 13106913 -129164531 + L1PA7 LINE L1 5814 6154 0 21 71 0 0 chr9 13107907 13107949 -129163495 + AT_rich Low_complexity Low_complexity 1 42 0 765 222 21 21 chr9 13108277 13108466 -129162978 - MLT1C LTR MaLR 0 467 279 1386 136 103 7 chr9 13108485 13108757 -129162687 - MER67C LTR ERV1 -307 403 106 2252 133 63 24 chr9 13108758 13109171 -129162273 - Tigger2a DNA MER2_type -5 429 1 497 208 8 17 chr9 13109171 13109285 -129162159 - MER67D LTR ERV1 -401 113 1 239 348 0 42 chr9 13109285 13109403 -129162041 + L2 LINE L2 3163 3275 -38 2021 142 10 0 chr9 13109442 13109744 -129161700 - AluSx SINE Alu -5 307 3 1968 280 76 24 chr9 13112064 13112983 -129158461 - L1ME1 LINE L1 -51 6115 5155 1507 240 232 40 chr9 13113241 13114037 -129157407 - L1MC4 LINE L1 -314 7728 6780 997 275 26 39 chr9 13114103 13114499 -129156945 - MLT1E3 LTR MaLR -1 623 200 271 247 41 0 chr9 13114510 13114583 -129156861 - MLT1C LTR MaLR -391 263 188 7283 112 23 60 chr9 13115321 13121323 -129150121 - L1PA5 LINE L1 -6 6148 418 270 0 0 0 chr9 13121323 13121353 -129150091 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 7283 112 23 60 chr9 13121353 13121749 -129149695 - L1PA5 LINE L1 -5736 418 9 2149 134 30 19 chr9 13122914 13123279 -129148165 - THE1C LTR MaLR -4 371 3 24 67 0 0 chr9 13123384 13123429 -129148015 + AT_rich Low_complexity Low_complexity 1 45 0 300 359 39 0 chr9 13124073 13124176 -129147268 + MER91C DNA MER1_type 2 108 -32 234 347 29 35 chr9 13124305 13124475 -129146969 + L1MCc LINE L1 114 282 -6141 3846 204 10 7 chr9 13124625 13125396 -129146048 - MSTA-int LTR MaLR -877 774 1 2053 190 59 5 chr9 13125396 13125802 -129145642 - MSTA LTR MaLR 0 428 1 3199 215 36 12 chr9 13125802 13126634 -129144810 - L1 LINE L1 -1171 4975 4124 * 3991 178 61 6 chr9 13126633 13127449 -129143995 + L1MB3 LINE L1 5319 6179 -4 491 281 31 6 chr9 13127707 13127867 -129143577 + L1MC5 LINE L1 7762 7925 -36 1773 217 13 0 chr9 13127876 13128250 -129143194 + L1MC1 LINE L1 5950 6328 -5 2222 168 21 46 chr9 13128385 13128820 -129142624 + MLT1C LTR MaLR 1 424 -43 662 168 0 48 chr9 13128818 13128943 -129142501 + MLT1C LTR MaLR 349 467 0 * 2225 126 0 0 chr9 13129561 13129870 -129141574 + AluSq SINE Alu 3 311 -2 647 289 79 33 chr9 13130020 13130185 -129141259 + L1ME2 LINE L1 4624 4780 -1366 1440 104 50 9 chr9 13130185 13130406 -129141038 - MER30 DNA MER1_type 0 230 1 647 289 79 33 chr9 13130406 13130749 -129140695 + L1ME2 LINE L1 4780 5155 -991 3138 115 17 19 chr9 13130808 13131347 -129140097 - L1MA3 LINE L1 0 6305 5768 231 242 62 37 chr9 13131432 13131508 -129139936 + L1ME2 LINE L1 5265 5338 -824 1441 208 48 28 chr9 13131508 13131864 -129139580 + MLT1A1 LTR MaLR 3 365 0 231 242 62 37 chr9 13131864 13131948 -129139496 + L1ME2 LINE L1 5338 5429 -733 696 286 65 26 chr9 13131949 13132360 -129139084 + L1ME2 LINE L1 5719 6148 -16 1753 210 39 50 chr9 13132395 13132833 -129138611 + MER82 DNA MER2_type 2 434 -219 5167 185 16 10 chr9 13132833 13133429 -129138015 - L1P LINE L1 -1218 4928 4322 2336 97 3 0 chr9 13133429 13133738 -129137706 - AluSp SINE Alu -3 310 1 5167 185 16 10 chr9 13133738 13134175 -129137269 - L1P LINE L1 -1824 4322 3889 * 5584 113 28 78 chr9 13134173 13135502 -129135942 + L1PA14 LINE L1 4927 6161 0 195 129 0 0 chr9 13135887 13135918 -129135526 + (A)n Simple_repeat Simple_repeat 1 31 0 745 271 64 9 chr9 13135921 13136139 -129135305 + MER82 DNA MER2_type 424 653 0 3744 121 48 139 chr9 13136742 13138284 -129133160 - pTR5 LTR ERV1 0 2438 741 26 0 0 0 chr9 13138426 13138452 -129132992 + AT_rich Low_complexity Low_complexity 1 26 0 216 163 0 0 chr9 13138564 13138607 -129132837 + (TA)n Simple_repeat Simple_repeat 2 44 0 216 216 0 0 chr9 13138598 13138649 -129132795 + (CA)n Simple_repeat Simple_repeat 2 52 0 1754 155 36 65 chr9 13138649 13139029 -129132415 + Tigger2a DNA MER2_type 1 371 -2337 225 0 0 0 chr9 13139029 13139054 -129132390 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr9 13139181 13139204 -129132240 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 13139241 13139264 -129132180 + AT_rich Low_complexity Low_complexity 1 23 0 193 54 0 54 chr9 13139736 13139773 -129131671 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 24 53 0 0 chr9 13140314 13140352 -129131092 + AT_rich Low_complexity Low_complexity 1 38 0 251 366 59 0 chr9 13141060 13141161 -129130283 + MER91C DNA MER1_type 2 108 -32 1885 166 84 56 chr9 13141652 13142092 -129129352 + L1PA15 LINE L1 5456 5842 -314 234 91 0 0 chr9 13142092 13142125 -129129319 + (TA)n Simple_repeat Simple_repeat 2 34 0 1885 166 84 56 chr9 13142125 13142447 -129128997 + L1PA15 LINE L1 5842 6153 -3 261 117 67 33 chr9 13142450 13142510 -129128934 + Tigger3(Golem) DNA MER2_type 198 259 -2770 23 54 0 0 chr9 13142607 13142644 -129128800 + AT_rich Low_complexity Low_complexity 1 37 0 930 306 93 58 chr9 13144010 13144601 -129126843 + L1M2c LINE L1 7 618 -6171 * 1629 160 16 13 chr9 13144598 13144916 -129126528 - L1 LINE L1 -1751 4395 4077 1930 211 29 88 chr9 13144969 13145558 -129125886 - MLT2B3 LTR ERVL 0 554 1 2233 112 0 0 chr9 13145736 13146039 -129125405 + AluY SINE Alu 7 309 -2 28 29 0 0 chr9 13146342 13146377 -129125067 + AT_rich Low_complexity Low_complexity 1 35 0 201 213 0 0 chr9 13146481 13146528 -129124916 + (TA)n Simple_repeat Simple_repeat 2 48 0 249 83 0 0 chr9 13146539 13146575 -129124869 + (CA)n Simple_repeat Simple_repeat 2 37 0 975 227 10 15 chr9 13146576 13146779 -129124665 - MER8 DNA MER2_type -2 237 36 21 57 0 0 chr9 13146783 13146818 -129124626 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 13146913 13146938 -129124506 + AT_rich Low_complexity Low_complexity 1 25 0 1953 125 4 0 chr9 13146940 13147219 -129124225 + AluSx SINE Alu 3 282 -30 317 252 0 0 chr9 13147226 13147333 -129124111 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 704 61 10 0 chr9 13147500 13147598 -129123846 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 265 235 37 0 chr9 13147734 13147815 -129123629 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 240 311 68 25 chr9 13147954 13148115 -129123329 - L1 LINE L1 -1983 4163 3996 701 335 23 23 chr9 13148132 13148559 -129122885 - L1ME3A LINE L1 -17 6153 5727 1609 220 35 27 chr9 13148595 13148968 -129122476 + L1MDa LINE L1 18 393 -6147 1450 118 45 0 chr9 13149054 13149274 -129122170 + MER30 DNA MER1_type 1 230 0 7730 39 2 5 chr9 13150005 13151735 -129119709 - L1PA4 LINE L1 -3 6152 4425 23573 40 9 2 chr9 13151735 13154703 -129116741 + L1PA4 LINE L1 1408 4398 -1748 549 286 132 19 chr9 13155563 13155829 -129115615 + MLT1I LTR MaLR 111 406 -3 21 57 0 0 chr9 13156221 13156256 -129115188 + AT_rich Low_complexity Low_complexity 1 35 0 1844 203 84 66 chr9 13156365 13156863 -129114581 + MER67D LTR ERV1 1 507 -7 791 349 29 14 chr9 13157272 13157622 -129113822 + Charlie6 DNA MER1_type 21 375 -3125 1197 150 340 3 chr9 13157763 13158057 -129113387 - MSTA LTR MaLR -34 394 2 968 97 7 14 chr9 13158058 13158202 -129113242 - THE1C-int LTR MaLR 0 1580 1438 6336 150 60 6 chr9 13158213 13159286 -129112158 - THE1C-int LTR MaLR -449 1131 1 1678 155 78 19 chr9 13159298 13159620 -129111824 - THE1C LTR MaLR -34 341 1 225 247 123 0 chr9 13159623 13159704 -129111740 + Charlie6 DNA MER1_type 636 726 -2774 402 279 81 25 chr9 13160631 13160792 -129110652 - MLT1J2 LTR MaLR -8 442 273 213 196 0 0 chr9 13163299 13163350 -129108094 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 57 0 0 chr9 13163421 13163456 -129107988 + AT_rich Low_complexity Low_complexity 1 35 0 34 79 0 0 chr9 13163614 13163690 -129107754 + AT_rich Low_complexity Low_complexity 1 76 0 36 53 0 0 chr9 13164178 13164235 -129107209 + AT_rich Low_complexity Low_complexity 1 57 0 287 221 12 0 chr9 13164477 13164563 -129106881 + (TA)n Simple_repeat Simple_repeat 2 88 0 250 295 57 57 chr9 13164644 13164749 -129106695 - MIR SINE MIR -147 115 11 30 27 0 0 chr9 13165622 13165659 -129105785 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr9 13166128 13166171 -129105273 + AT_rich Low_complexity Low_complexity 1 43 0 979 225 4 26 chr9 13166187 13166414 -129105030 - L1MD2 LINE L1 -17 6342 6121 5239 201 28 7 chr9 13166861 13168110 -129103334 - L1MC1 LINE L1 -6 6396 5122 321 246 0 0 chr9 13168112 13168177 -129103267 - L1MC1 LINE L1 -4041 2355 2291 1994 162 123 5 chr9 13168417 13168800 -129102644 - MSTA LTR MaLR 0 428 1 4589 217 37 15 chr9 13270014 13272053 -128999391 + L1M2 LINE L1 1928 4066 -2782 234 0 0 0 chr9 13272063 13272089 -128999355 + (GA)n Simple_repeat Simple_repeat 2 27 0 3757 202 39 24 chr9 13272189 13274118 -128997326 - L1M2 LINE L1 -656 5656 3512 1383 169 0 25 chr9 13274301 13274579 -128996865 + L1PB1 LINE L1 5786 6056 -95 586 305 126 41 chr9 13275011 13275549 -128995895 - L1MC5 LINE L1 -45 7916 7333 214 214 29 58 chr9 13275861 13275964 -128995480 + (TATAA)n Simple_repeat Simple_repeat 1 100 0 22 80 0 0 chr9 13276478 13276528 -128994916 + AT_rich Low_complexity Low_complexity 1 50 0 9551 207 34 13 chr9 13276933 13277161 -128994283 + L1P5 LINE L1 2694 2916 -3235 2782 7 0 0 chr9 13277161 13277465 -128993979 + AluYa5 SINE Alu 1 304 -7 9551 207 34 13 chr9 13277465 13280237 -128991207 + L1P5 LINE L1 2916 5754 -397 2890 193 63 15 chr9 13280337 13281021 -128990423 - L1PA12 LINE L1 -4811 2773 2057 225 270 0 16 chr9 13281058 13281121 -128990323 - L1PA12 LINE L1 -5660 1925 1864 324 356 37 30 chr9 13281413 13281683 -128989761 - L1M2 LINE L1 -5782 1067 796 1137 323 65 36 chr9 13281795 13282606 -128988838 - L1PA12 LINE L1 -5660 1921 10 1136 234 69 76 chr9 13284056 13284449 -128986995 + MLT1B LTR MaLR 1 390 0 1013 287 45 27 chr9 13284473 13284874 -128986570 - L1MCc LINE L1 -5994 429 22 953 291 175 41 chr9 13285284 13285792 -128985652 - MLT1H1 LTR MaLR 0 555 15 237 65 0 0 chr9 13285795 13285826 -128985618 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 301 48 0 chr9 13286163 13286246 -128985198 - HAL1 LINE L1 -16 2491 2405 1184 216 17 6 chr9 13286286 13286617 -128984827 + MER74C LTR ERVL 3 419 -139 302 266 115 91 chr9 13288039 13288423 -128983021 + MLT1J LTR MaLR 45 437 -74 437 316 175 0 chr9 13288659 13288865 -128982579 - MIR SINE MIR 0 262 21 1025 216 9 0 chr9 13289655 13289873 -128981571 - THE1-int LTR MaLR -33 1547 1328 787 310 7 19 chr9 13290081 13290500 -128980944 - L1P4 LINE L1 -486 6383 5970 278 23 0 68 chr9 13290582 13290626 -128980818 + (T)n Simple_repeat Simple_repeat 1 41 0 8040 251 62 26 chr9 13290626 13291415 -128980029 - L1P4 LINE L1 -964 5885 5126 362 21 21 0 chr9 13291415 13291462 -128979982 + (TG)n Simple_repeat Simple_repeat 1 48 0 8040 251 62 26 chr9 13291462 13291664 -128979780 - L1P4 LINE L1 -1723 5126 4933 2361 61 3 3 chr9 13291664 13291974 -128979470 + AluY SINE Alu 1 310 -1 8040 251 62 26 chr9 13291974 13293613 -128977831 - L1P4 LINE L1 -1916 4933 3160 2998 145 26 33 chr9 13293616 13294197 -128977247 - L1P4 LINE L1 -3952 2897 2321 620 149 35 8 chr9 13294298 13294518 -128976926 + L1P3 LINE L1 112 519 -5356 323 130 52 0 chr9 13294516 13294593 -128976851 - L1P LINE L1 -2962 3184 3104 * 10085 191 17 27 chr9 13294597 13295287 -128976157 + L1P3 LINE L1 523 1219 -5242 350 85 17 0 chr9 13295287 13295346 -128976098 + (CAA)n Simple_repeat Simple_repeat 1 60 0 10085 191 17 27 chr9 13295346 13297432 -128974012 + L1P3 LINE L1 1219 3344 -3117 184 327 40 10 chr9 13297680 13297781 -128973663 + MIR SINE MIR 48 151 -111 22 35 0 0 chr9 13297935 13297964 -128973480 + AT_rich Low_complexity Low_complexity 1 29 0 369 62 0 0 chr9 13297972 13298020 -128973424 + (TA)n Simple_repeat Simple_repeat 2 49 0 1646 166 0 4 chr9 13298092 13298351 -128973093 - AluSq SINE Alu -49 264 7 23 33 0 0 chr9 13298447 13298477 -128972967 + AT_rich Low_complexity Low_complexity 1 30 0 1908 172 34 0 chr9 13298600 13298926 -128972518 + MER1B DNA MER1_type 1 337 0 3583 161 25 3 chr9 13299355 13300026 -128971418 - L1MA4 LINE L1 -4 6296 5611 2060 161 18 19 chr9 13300026 13300456 -128970988 + L1M1 LINE L1 5221 5650 -650 193 335 97 65 chr9 13300584 13300769 -128970675 - MIR SINE MIR -68 194 4 1402 245 50 6 chr9 13301714 13302053 -128969391 - MER21B LTR ERV1 -146 717 364 194 296 130 28 chr9 13302057 13302165 -128969279 - L2 LINE L2 -12 3260 3142 21 36 0 0 chr9 13304886 13304914 -128966530 + AT_rich Low_complexity Low_complexity 1 28 0 192 77 0 0 chr9 13305980 13306006 -128965438 + (GA)n Simple_repeat Simple_repeat 1 26 0 348 250 45 75 chr9 13306507 13306539 -128964905 - L1M4c LINE L1 -5077 1307 1276 306 73 0 0 chr9 13306539 13306580 -128964864 + (CA)n Simple_repeat Simple_repeat 1 41 0 348 250 45 75 chr9 13306580 13306747 -128964697 - L1M4c LINE L1 -5108 1276 1114 376 184 3 8 chr9 13306810 13306907 -128964537 - AluJ/FRAM SINE Alu -15 287 131 207 0 0 0 chr9 13307500 13307523 -128963921 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 14183 131 13 0 chr9 13307857 13310925 -128960519 + L1PA8A LINE L1 3028 6126 -5 1800 210 82 12 chr9 13310990 13311418 -128960026 + LOR1b LTR ERV1 1 458 -3 1513 163 12 0 chr9 13312115 13312366 -128959078 + MSTA LTR MaLR 1 254 -174 310 146 21 0 chr9 13312841 13312889 -128958555 - LOR1a LTR ERV1 0 497 449 29 84 0 0 chr9 13313040 13313111 -128958333 + AT_rich Low_complexity Low_complexity 1 71 0 189 74 0 0 chr9 13313797 13313824 -128957620 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 239 352 43 31 chr9 13314441 13314603 -128956841 + MIR SINE MIR 32 195 -67 302 268 92 52 chr9 13314686 13314789 -128956655 + MIR SINE MIR 41 153 -109 1689 187 57 157 chr9 13314789 13315597 -128955847 + LTR8A LTR ERV1 1 727 0 302 268 92 52 chr9 13315597 13315646 -128955798 + MIR SINE MIR 153 199 -63 584 313 152 36 chr9 13317706 13318173 -128953271 - L2 LINE L2 -528 2786 2266 273 29 0 0 chr9 13318175 13318209 -128953235 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr9 13318584 13318610 -128952834 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 13318801 13318829 -128952615 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 13319012 13319034 -128952410 + AT_rich Low_complexity Low_complexity 1 22 0 1753 167 3 13 chr9 13319284 13319616 -128951828 - AluSx SINE Alu 0 312 2 2221 183 49 6 chr9 13320399 13320892 -128950552 - L1MA9 LINE L1 -2 6310 5797 219 69 0 0 chr9 13320897 13320926 -128950518 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 153 17 0 chr9 13321019 13321078 -128950366 + (TA)n Simple_repeat Simple_repeat 1 60 0 323 23 23 0 chr9 13321116 13321160 -128950284 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 980 180 0 0 chr9 13321188 13321355 -128950089 - L1MA9 LINE L1 -542 5749 5583 2658 209 42 12 chr9 13321357 13322028 -128949416 - L1MA9 LINE L1 -909 5237 4547 4473 165 22 26 chr9 13322028 13323027 -128948417 - L1PB4 LINE L1 -3 6153 5158 25 0 0 0 chr9 13323516 13323541 -128947903 + AT_rich Low_complexity Low_complexity 1 25 0 2270 96 3 0 chr9 13324580 13324882 -128946562 + AluSx SINE Alu 2 304 -8 21 36 0 0 chr9 13324971 13324999 -128946445 + AT_rich Low_complexity Low_complexity 1 28 0 719 135 0 0 chr9 13325033 13325137 -128946307 - MLT1A1 LTR MaLR 0 365 262 566 167 32 56 chr9 13325139 13325265 -128946179 - MLT1A1 LTR MaLR -242 123 1 8652 223 63 60 chr9 13325317 13329821 -128941623 - L1MA9 LINE L1 -11 6537 2015 3106 148 17 0 chr9 13329901 13330379 -128941065 + LTR10B LTR ERV1 20 505 0 650 176 170 13 chr9 13330379 13330532 -128940912 - MER4A-int LTR ERV1 -6421 177 1 3397 133 6 50 chr9 13330539 13331162 -128940282 - MER4A LTR ERV1 -4 596 1 488 331 36 49 chr9 13331227 13331638 -128939806 + L1MC4a LINE L1 5487 5892 -1916 24 103 0 0 chr9 13332475 13332562 -128938882 + AT_rich Low_complexity Low_complexity 1 87 0 23 33 0 0 chr9 13332938 13332968 -128938476 + AT_rich Low_complexity Low_complexity 1 30 0 2165 57 4 0 chr9 13333523 13333788 -128937656 - AluY SINE Alu -11 300 35 903 271 48 38 chr9 13335042 13335415 -128936029 - LTR52 LTR ERVL -34 387 11 187 377 0 26 chr9 13335609 13335686 -128935758 + L2 LINE L2 3021 3095 -177 428 336 114 19 chr9 13335887 13336211 -128935233 + LTR33 LTR ERVL 111 465 -56 1622 205 130 20 chr9 13336563 13337016 -128934428 - MLT1D LTR MaLR -2 503 1 1549 189 36 6 chr9 13337587 13337921 -128933523 + L1MA5 LINE L1 5955 6298 -2 204 245 0 19 chr9 13338613 13338666 -128932778 + MIR SINE MIR 175 226 -36 21 0 0 0 chr9 13338716 13338737 -128932707 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 13339331 13339365 -128932079 + AT_rich Low_complexity Low_complexity 1 34 0 1916 125 4 7 chr9 13339681 13339962 -128931482 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr9 13339966 13339998 -128931446 + (GA)n Simple_repeat Simple_repeat 2 33 0 2336 138 102 4 chr9 13340242 13340687 -128930757 - L1MA5 LINE L1 -35 6265 5775 248 184 0 0 chr9 13340671 13340720 -128930724 + L1MA6 LINE L1 6248 6296 -4 * 30 45 0 0 chr9 13340720 13340764 -128930680 + AT_rich Low_complexity Low_complexity 1 44 0 225 211 42 11 chr9 13341010 13341105 -128930339 + (TA)n Simple_repeat Simple_repeat 1 98 0 219 188 0 0 chr9 13341125 13341173 -128930271 + (TA)n Simple_repeat Simple_repeat 2 49 0 23 54 0 0 chr9 13341747 13341784 -128929660 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr9 13343172 13343224 -128928220 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 13344060 13344089 -128927355 + AT_rich Low_complexity Low_complexity 1 29 0 2230 68 26 13 chr9 13344752 13344878 -128926566 + AluY SINE Alu 1 124 -187 243 0 0 0 chr9 13344878 13344905 -128926539 + (CA)n Simple_repeat Simple_repeat 2 28 0 2230 68 26 13 chr9 13344905 13345085 -128926359 + AluY SINE Alu 124 311 0 26 0 0 0 chr9 13345252 13345278 -128926166 + AT_rich Low_complexity Low_complexity 1 26 0 25 75 0 0 chr9 13345677 13345730 -128925714 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr9 13345852 13345881 -128925563 + AT_rich Low_complexity Low_complexity 1 29 0 962 168 10 41 chr9 13346287 13346483 -128924961 - L1MB1 LINE L1 -24 6144 5955 3166 178 49 77 chr9 13346486 13347965 -128923479 - L1MB1 LINE L1 -286 5882 4456 2608 239 36 61 chr9 13347975 13348044 -128923400 - L1MB1 LINE L1 -2751 3395 3326 2043 140 16 0 chr9 13348044 13348351 -128923093 - AluSx SINE Alu 0 312 1 2608 239 36 61 chr9 13348351 13348899 -128922545 - L1MB1 LINE L1 -2820 3326 2818 825 233 0 6 chr9 13348899 13349062 -128922382 - FAM SINE Alu -12 163 2 2608 239 36 61 chr9 13349062 13349613 -128921831 - L1MB1 LINE L1 -3328 2818 2255 1202 237 48 74 chr9 13349616 13349799 -128921645 + L1M4c LINE L1 1415 1601 -4783 213 39 0 0 chr9 13349799 13349825 -128921619 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1202 237 48 74 chr9 13349825 13350101 -128921343 + L1M4c LINE L1 1601 1862 -4522 235 253 44 33 chr9 13350268 13350359 -128921085 - L1MCb LINE L1 -4682 2063 1972 4176 233 58 46 chr9 13350360 13351274 -128920170 - L1MC3 LINE L1 -16 7769 6833 204 40 0 0 chr9 13351274 13351299 -128920145 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4176 233 58 46 chr9 13351299 13351674 -128919770 - L1MC3 LINE L1 -952 6833 6464 358 207 24 24 chr9 13351682 13351764 -128919680 - L1MC3 LINE L1 -1402 6383 6302 1141 199 21 102 chr9 13351864 13352311 -128919133 - LTR34 LTR ERV1 -304 395 1 2635 199 55 25 chr9 13352349 13353113 -128918331 - LTR1B LTR ERV1 -1 784 1 2527 280 69 25 chr9 13353113 13353610 -128917834 - L1MCb LINE L1 -4851 1194 721 189 0 0 0 chr9 13353610 13353631 -128917813 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2527 280 69 25 chr9 13353631 13354559 -128916885 - L1MCb LINE L1 -5324 721 3 994 323 61 23 chr9 13354592 13355066 -128916378 - L1MCc LINE L1 -5102 1321 830 1174 283 46 12 chr9 13355370 13355801 -128915643 - L1MCc LINE L1 -5948 475 30 252 409 42 42 chr9 13356116 13356329 -128915115 - L2 LINE L2 -19 3253 3041 27 29 0 0 chr9 13357407 13357441 -128914003 + AT_rich Low_complexity Low_complexity 1 34 0 4202 281 88 35 chr9 13357511 13361080 -128910364 - L1MD2 LINE L1 0 6428 2435 987 139 0 0 chr9 13361080 13361260 -128910184 + (TA)n Simple_repeat Simple_repeat 1 180 0 4202 281 88 35 chr9 13361260 13363728 -128907716 - L1MD2 LINE L1 -3993 2435 100 185 224 17 0 chr9 13364084 13364142 -128907302 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 739 264 17 64 chr9 13364241 13364476 -128906968 - MER58A DNA MER1_type 0 224 1 24 0 0 0 chr9 13365371 13365395 -128906049 + AT_rich Low_complexity Low_complexity 1 24 0 270 381 116 28 chr9 13365750 13366112 -128905332 - L2 LINE L2 -411 2903 2510 203 406 0 0 chr9 13366244 13366313 -128905131 - MIR SINE MIR -188 74 6 25 95 0 0 chr9 13367299 13367373 -128904071 + AT_rich Low_complexity Low_complexity 1 74 0 240 35 0 0 chr9 13368981 13369010 -128902434 + (CA)n Simple_repeat Simple_repeat 1 29 0 205 200 0 22 chr9 13369247 13369292 -128902152 + CT-rich Low_complexity Low_complexity 3 46 0 1829 218 47 24 chr9 13369651 13370118 -128901326 + MLT1D LTR MaLR 28 505 0 239 304 94 22 chr9 13370625 13370849 -128900595 - HAL1 LINE L1 -295 2212 1973 416 325 25 15 chr9 13370950 13371150 -128900294 - HAL1 LINE L1 -749 1758 1557 21 36 0 0 chr9 13371180 13371208 -128900236 + AT_rich Low_complexity Low_complexity 1 28 0 254 306 75 48 chr9 13371989 13372136 -128899308 + L2 LINE L2 3122 3272 0 2557 163 2 0 chr9 13372781 13373204 -128898240 - THE1C-int LTR MaLR -1153 427 4 1400 193 76 25 chr9 13373207 13373564 -128897880 - THE1C LTR MaLR 0 375 1 1091 179 0 0 chr9 13373995 13374191 -128897253 + L1PBa LINE L1 3 198 -6665 * 9653 136 54 18 chr9 13374179 13375959 -128895485 + L1PBa LINE L1 617 2672 -4190 2296 82 7 0 chr9 13375959 13376252 -128895192 + AluY SINE Alu 1 295 -16 9653 136 54 18 chr9 13376252 13377000 -128894444 + L1PBa LINE L1 2672 3391 -3471 203 222 42 14 chr9 13378087 13378159 -128893285 + A-rich Low_complexity Low_complexity 5 78 0 257 0 30 0 chr9 13378491 13378524 -128892920 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2014 125 0 0 chr9 13378527 13378807 -128892637 - AluSg SINE Alu -30 280 1 5298 71 43 3 chr9 13379729 13380464 -128890980 - MER4E LTR ERV1 -1 765 1 24 32 0 0 chr9 13380502 13380533 -128890911 + AT_rich Low_complexity Low_complexity 1 31 0 578 190 35 81 chr9 13381994 13382168 -128889276 - LTR40b LTR ERVL -6 456 291 1431 302 42 30 chr9 13382170 13382697 -128888747 - REP3 LTR ERV -27 535 3 346 308 75 50 chr9 13382697 13382834 -128888610 - LTR40a LTR ERVL -172 347 207 1401 188 65 7 chr9 13382835 13383111 -128888333 + MSTB LTR MaLR 3 294 -132 1931 147 7 0 chr9 13383613 13383913 -128887531 + AluSx SINE Alu 11 312 0 731 256 31 0 chr9 13384364 13384587 -128886857 - L1M4 LINE L1 -2369 3777 3548 24 0 0 0 chr9 13384729 13384753 -128886691 + AT_rich Low_complexity Low_complexity 1 24 0 2289 91 3 0 chr9 13385247 13385544 -128885900 + AluSp SINE Alu 1 298 -15 810 237 0 29 chr9 13386233 13386406 -128885038 + AluJo SINE Alu 122 289 -23 427 206 153 24 chr9 13386422 13386592 -128884852 + LTR37A LTR ERV1 166 357 -69 704 270 49 85 chr9 13386611 13387162 -128884282 - L1M4 LINE L1 -2600 3546 3016 2054 139 6 30 chr9 13387162 13387494 -128883950 + THE1B LTR MaLR 1 324 -40 296 170 0 0 chr9 13387485 13387538 -128883906 - AluSg/x SINE Alu -116 184 132 * 805 158 0 0 chr9 13387538 13387671 -128883773 - AluJo/FLAM SINE Alu -169 133 1 990 191 0 62 chr9 13387671 13387896 -128883548 + THE1B LTR MaLR 154 364 0 396 291 7 20 chr9 13387899 13388047 -128883397 - L1M4 LINE L1 -3129 3017 2872 275 330 92 0 chr9 13388047 13388156 -128883288 + L2 LINE L2 1719 1837 -1477 1208 190 0 25 chr9 13388270 13388507 -128882937 - AluJb SINE Alu -16 296 66 313 285 29 81 chr9 13388623 13389185 -128882259 + L1MEd LINE L1 936 1357 -4774 21 0 0 0 chr9 13389611 13389632 -128881812 + AT_rich Low_complexity Low_complexity 1 21 0 230 109 16 47 chr9 13389847 13389911 -128881533 + (TA)n Simple_repeat Simple_repeat 1 62 0 965 342 18 10 chr9 13390667 13391062 -128880382 + LTR16A LTR ERVL 22 419 -31 386 271 60 26 chr9 13391510 13391661 -128879783 + L1MC4a LINE L1 5424 5579 -2229 1915 125 11 4 chr9 13391733 13392013 -128879431 - AluSx SINE Alu -30 282 1 975 74 5 58 chr9 13392013 13392203 -128879241 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 301 162 29 0 chr9 13392206 13392274 -128879170 + CT-rich Low_complexity Low_complexity 2 71 0 1349 201 56 26 chr9 13392291 13392472 -128878972 - AluJb SINE Alu 0 312 117 216 0 0 0 chr9 13392472 13392496 -128878948 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1349 201 56 26 chr9 13392496 13392617 -128878827 - AluJb SINE Alu -195 117 1 335 267 164 44 chr9 13392617 13393074 -128878370 + L1MC4a LINE L1 5844 6355 -1453 583 69 23 0 chr9 13393138 13393225 -128878219 - LTR19A LTR ERV1 -2 484 396 2038 172 79 0 chr9 13393235 13393676 -128877768 + L1MC2 LINE L1 5479 5954 -1831 1506 145 58 52 chr9 13393645 13393989 -128877455 + L1MB1 LINE L1 5819 6164 -4 * 394 313 10 10 chr9 13394250 13394458 -128876986 + L1MB1 LINE L1 5938 6145 -23 332 264 42 60 chr9 13394497 13394564 -128876880 + L1MC2 LINE L1 5971 6038 -306 10427 50 1 0 chr9 13394564 13396593 -128874851 - L1PA5 LINE L1 -15 6139 4081 332 264 42 60 chr9 13396593 13396692 -128874752 + L1MC2 LINE L1 6038 6134 -210 4106 213 70 19 chr9 13396729 13397852 -128873592 + L1MC3 LINE L1 6597 7777 -8 636 238 0 0 chr9 13397866 13397988 -128873456 + L1MC4 LINE L1 6712 6833 -1209 231 284 58 82 chr9 13398149 13398357 -128873087 + L1MC4 LINE L1 6903 7105 -937 250 250 135 10 chr9 13398642 13398738 -128872706 + MIR SINE MIR 154 261 -1 2493 91 17 0 chr9 13398993 13399344 -128872100 - L1PA10 LINE L1 0 6168 5812 180 172 0 0 chr9 13399667 13399696 -128871748 + MER5A DNA MER1_type 129 157 -32 408 301 28 23 chr9 13400428 13400604 -128870840 + MER5B DNA MER1_type 1 177 -1 1476 255 54 22 chr9 13401149 13401596 -128869848 - MLT1H1 LTR MaLR -3 552 92 1951 199 41 21 chr9 13401600 13402036 -128869408 + MER34 LTR ERV1 1 445 -97 2717 138 5 13 chr9 13402053 13402558 -128868886 - L1P4 LINE L1 -475 6394 5893 282 115 0 0 chr9 13402561 13402613 -128868831 + (T)n Simple_repeat Simple_repeat 1 52 0 308 351 25 25 chr9 13402656 13402895 -128868549 - L1 LINE L1 -1022 5124 4886 10541 245 38 28 chr9 13403184 13403458 -128867986 - L1P4 LINE L1 -1005 5844 5574 180 0 0 0 chr9 13403458 13403478 -128867966 + (TTG)n Simple_repeat Simple_repeat 1 20 0 10541 245 38 28 chr9 13403478 13407584 -128863860 - L1P4 LINE L1 -1275 5574 1336 734 317 49 7 chr9 13407632 13407916 -128863528 - L1P4 LINE L1 -6553 296 1 * 1232 195 47 12 chr9 13407915 13408253 -128863191 - L1 LINE L1 -1584 4562 4213 * 4037 106 7 5 chr9 13408239 13408817 -128862627 + L1P LINE L1 3884 4462 -1684 4167 155 70 36 chr9 13409838 13410703 -128860741 + MER4D LTR ERV1 1 895 -8 500 165 21 10 chr9 13410717 13410814 -128860630 + MER4A LTR ERV1 1 98 -566 1761 170 3 22 chr9 13410814 13411166 -128860278 + MER4A LTR ERV1 261 664 0 2871 105 165 10 chr9 13411168 13411494 -128859950 + MER4A-int LTR ERV1 1 275 -6323 221 0 0 33 chr9 13411494 13411524 -128859920 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2871 105 165 10 chr9 13411524 13411747 -128859697 + MER4A-int LTR ERV1 275 686 -5912 375 23 0 0 chr9 13411818 13411862 -128859582 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 604 256 50 5 chr9 13411928 13412186 -128859258 + MER4A-int LTR ERV1 1861 2161 -4170 3885 150 14 23 chr9 13412263 13412903 -128858541 + MER4A-int LTR ERV1 198 831 -5927 1335 137 29 72 chr9 13412934 13413211 -128858233 + MER4A-int LTR ERV1 924 1188 -5570 4006 104 60 8 chr9 13413222 13413926 -128857518 + MER4A-int LTR ERV1 1756 2495 -4103 1340 158 67 8 chr9 13413926 13414166 -128857278 - LTR8 LTR ERV1 -434 257 4 2535 161 74 21 chr9 13414168 13414892 -128856552 + MER4A-int LTR ERV1 2736 4140 -2536 324 169 34 0 chr9 13414889 13414948 -128856496 + MER4A-int LTR ERV1 3626 3686 -2912 * 6131 111 59 15 chr9 13414942 13415987 -128855457 + MER4A-int LTR ERV1 3837 4927 -1671 9555 122 51 18 chr9 13416087 13417742 -128853702 + MER4A-int LTR ERV1 4876 6584 -14 519 134 31 21 chr9 13417761 13417858 -128853586 + MER4A LTR ERV1 1 98 -566 1757 160 0 23 chr9 13417909 13418209 -128853235 + MER4A LTR ERV1 372 664 0 285 322 62 17 chr9 13418316 13418493 -128852951 + MIR SINE MIR 78 262 0 1195 220 68 153 chr9 13418649 13418871 -128852573 - L1MC4 LINE L1 -959 7083 6844 419 102 0 159 chr9 13418871 13418959 -128852485 + MER84 LTR ERVI 1 74 -433 2793 175 22 0 chr9 13418959 13419450 -128851994 + MER84 LTR ERV1 2 503 -4 1195 220 68 153 chr9 13419450 13419820 -128851624 - L1MC4 LINE L1 -1196 6846 6461 1458 120 9 0 chr9 13420213 13420446 -128850998 - L1MA1 LINE L1 0 6302 6068 23 0 0 0 chr9 13420457 13420480 -128850964 + AT_rich Low_complexity Low_complexity 1 23 0 956 154 0 70 chr9 13421778 13421992 -128849452 + L1MA8 LINE L1 6085 6283 -8 437 117 0 0 chr9 13421918 13421995 -128849449 + L1MA8 LINE L1 6210 6286 -5 336 155 99 14 chr9 13422023 13422094 -128849350 + L1ME2 LINE L1 5995 6071 -93 1500 209 118 112 chr9 13422187 13422934 -128848510 - LTR1B LTR ERV1 -75 751 1 25 0 0 0 chr9 13423084 13423109 -128848335 + AT_rich Low_complexity Low_complexity 1 25 0 1676 166 18 0 chr9 13423244 13423546 -128847898 - AluJb SINE Alu 0 307 1 763 219 0 114 chr9 13424295 13424523 -128846921 - MLT1A1 LTR MaLR 0 365 164 645 177 16 16 chr9 13424573 13424697 -128846747 + MLT1A1 LTR MaLR 230 353 -12 1949 181 36 32 chr9 13425142 13425691 -128845753 + MLT2A2 LTR ERVL 1 554 0 336 329 82 37 chr9 13425752 13425995 -128845449 - MIR SINE MIR -2 260 7 380 353 27 0 chr9 13426211 13426361 -128845083 - MIR SINE MIR -17 245 92 278 254 42 14 chr9 13426704 13426775 -128844669 + MIR SINE MIR 35 107 -155 240 177 32 65 chr9 13426815 13426877 -128844567 + MIR SINE MIR 201 260 -2 * 267 202 95 12 chr9 13426870 13426954 -128844490 + MIR SINE MIR 99 189 -73 496 188 0 0 chr9 13426975 13427055 -128844389 + Charlie5 DNA MER1_type 10 89 -2523 229 250 0 0 chr9 13427859 13427907 -128843537 + MLT1K LTR MaLR 202 249 -339 24 0 0 0 chr9 13429682 13429706 -128841738 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 13430176 13430205 -128841239 + AT_rich Low_complexity Low_complexity 1 29 0 821 221 16 112 chr9 13430640 13430889 -128840555 + MER8 DNA MER2_type 15 239 0 403 330 167 19 chr9 13431363 13431939 -128839505 - L1M4 LINE L1 -2263 3883 3223 222 37 0 0 chr9 13432002 13432029 -128839415 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 856 236 67 18 chr9 13432314 13432635 -128838809 + MSTD LTR MaLR 1 396 0 189 318 101 23 chr9 13432924 13433053 -128838391 - MIR SINE MIR -110 152 14 180 288 29 93 chr9 13433093 13433232 -128838212 + L2 LINE L2 3160 3289 -24 321 26 0 0 chr9 13434378 13434416 -128837028 + (TTA)n Simple_repeat Simple_repeat 2 39 0 375 43 0 0 chr9 13434420 13434466 -128836978 - L1PA11 LINE L1 -41 6133 6088 22 0 0 0 chr9 13435215 13435237 -128836207 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr9 13436805 13436835 -128834609 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 13437973 13438001 -128833443 + AT_rich Low_complexity Low_complexity 1 28 0 2364 91 0 0 chr9 13438379 13438686 -128832758 + AluY SINE Alu 1 307 -4 2297 167 10 61 chr9 13439531 13440039 -128831405 - MER66B LTR ERV1 0 486 5 12482 244 37 34 chr9 13440042 13440539 -128830905 - MER66B-int LTR ERV1 0 6676 6182 2377 75 3 0 chr9 13440539 13440845 -128830599 - AluY SINE Alu -4 307 1 12482 244 37 34 chr9 13440845 13447397 -128824047 - MER66B-int LTR ERV1 -494 6182 1210 539 297 13 19 chr9 13447488 13447643 -128823801 - MER66B-int LTR ERV1 -3574 3102 2949 2920 228 79 27 chr9 13447738 13448514 -128822930 - MER66B-int LTR ERV1 -5571 1105 290 1354 163 105 25 chr9 13448517 13448794 -128822650 + THE1C LTR MaLR 77 375 0 2056 200 8 64 chr9 13448980 13449465 -128821979 - MER66B LTR ERV1 -4 482 25 345 294 49 14 chr9 13449875 13450018 -128821426 + MIR SINE MIR 101 248 -14 35 63 0 0 chr9 13450028 13450091 -128821353 + AT_rich Low_complexity Low_complexity 1 63 0 28 29 0 0 chr9 13450320 13450355 -128821089 + AT_rich Low_complexity Low_complexity 1 35 0 250 59 78 0 chr9 13450429 13450480 -128820964 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2268 228 51 2 chr9 13451490 13452038 -128819406 - L1MD3 LINE L1 -20 7975 7401 354 289 0 0 chr9 13452041 13452124 -128819320 - MLT1F1 LTR MaLR -448 119 37 34 72 0 0 chr9 13452257 13452326 -128819118 + AT_rich Low_complexity Low_complexity 1 69 0 263 323 234 6 chr9 13452414 13452572 -128818872 + MIR SINE MIR 51 244 -18 225 83 0 0 chr9 13452868 13452904 -128818540 + (CATAA)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr9 13453982 13454004 -128817440 + (A)n Simple_repeat Simple_repeat 1 22 0 1937 132 43 35 chr9 13454814 13455186 -128816258 - THE1C LTR MaLR 0 375 1 207 0 0 0 chr9 13455352 13455375 -128816069 + (TA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr9 13455374 13455397 -128816047 + (GA)n Simple_repeat Simple_repeat 2 24 0 35 54 0 0 chr9 13455845 13455901 -128815543 + AT_rich Low_complexity Low_complexity 1 56 0 213 414 0 0 chr9 13456811 13456922 -128814522 + MIR SINE MIR 34 144 -64 197 278 14 69 chr9 13457118 13457190 -128814254 - L2 LINE L2 -5 3267 3200 799 200 78 6 chr9 13460338 13460518 -128810926 - MLT1A1 LTR MaLR 0 365 173 208 389 14 22 chr9 13460654 13460793 -128810651 - MER5A DNA MER1_type -1 188 51 327 296 72 32 chr9 13461256 13461381 -128810063 - MIR SINE MIR -67 195 66 386 282 8 24 chr9 13461697 13461821 -128809623 + (CATA)n Simple_repeat Simple_repeat 2 123 0 365 293 57 21 chr9 13463498 13463638 -128807806 + LTR33 LTR ERVL 126 270 -251 30 45 0 0 chr9 13464383 13464427 -128807017 + AT_rich Low_complexity Low_complexity 1 44 0 2371 180 101 41 chr9 13464447 13465154 -128806290 + LTR28 LTR ERV1 1 634 -2 406 296 113 0 chr9 13465620 13465762 -128805682 + MIR SINE MIR 3 160 -102 245 164 36 0 chr9 13465992 13466047 -128805397 + (TA)n Simple_repeat Simple_repeat 2 58 0 2252 90 14 0 chr9 13466093 13466383 -128805061 - AluY SINE Alu -17 294 1 254 287 28 46 chr9 13466600 13466708 -128804736 + MIR SINE MIR 56 161 -101 390 309 73 36 chr9 13466728 13466948 -128804496 - L2 LINE L2 0 3313 3086 24 53 0 0 chr9 13467776 13467814 -128803630 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 13468298 13468319 -128803125 + AT_rich Low_complexity Low_complexity 1 21 0 216 296 102 11 chr9 13468720 13468808 -128802636 - MIR SINE MIR -87 175 80 221 0 0 33 chr9 13469452 13469482 -128801962 + (TATAA)n Simple_repeat Simple_repeat 5 33 0 21 36 0 0 chr9 13469484 13469512 -128801932 + AT_rich Low_complexity Low_complexity 1 28 0 424 34 0 17 chr9 13470437 13470496 -128800948 - L1PA3 LINE L1 -5 6150 6093 21 57 0 0 chr9 13470645 13470680 -128800764 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 13470984 13471009 -128800435 + AT_rich Low_complexity Low_complexity 1 25 0 185 350 70 40 chr9 13471082 13471282 -128800162 + MIR SINE MIR 2 207 -55 22 0 0 0 chr9 13472501 13472523 -128798921 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 13472546 13472574 -128798870 + AT_rich Low_complexity Low_complexity 1 28 0 344 172 83 0 chr9 13472633 13472790 -128798654 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 509 198 11 88 chr9 13474141 13474317 -128797127 + MER66A LTR ERV1 97 303 -251 180 0 0 0 chr9 13475320 13475340 -128796104 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 513 370 35 0 chr9 13475826 13476056 -128795388 - ERVL LTR ERVL -426 5338 5101 1950 207 20 47 chr9 13476189 13476633 -128794811 - MSTB1 LTR MaLR 0 432 1 483 287 57 24 chr9 13476802 13477136 -128794308 + L1ME LINE L1 3860 4204 -1942 212 224 15 0 chr9 13477186 13477253 -128794191 + GA-rich Low_complexity Low_complexity 3 70 0 280 355 79 14 chr9 13477618 13477832 -128793612 - LTR16C LTR ERVL 0 491 264 225 282 24 0 chr9 13478212 13478297 -128793147 + L1ME LINE L1 4757 4843 -1303 250 104 21 0 chr9 13478785 13478833 -128792611 + L1MD1 LINE L1 6194 6242 0 242 319 9 0 chr9 13478839 13478952 -128792492 + L1ME LINE L1 5333 5446 -718 2605 30 3 0 chr9 13478954 13479256 -128792188 + AluY SINE Alu 1 303 -8 867 180 85 0 chr9 13479954 13480143 -128791301 - L1MA4 LINE L1 -11 6289 6085 457 299 48 23 chr9 13480234 13480669 -128790775 - L1MEc LINE L1 -2887 3495 3050 519 265 53 35 chr9 13480700 13480870 -128790574 - MIR SINE MIR -60 202 30 1241 50 25 0 chr9 13481358 13481517 -128789927 - L1PA4 LINE L1 -2 6153 5991 39 60 0 0 chr9 13481559 13481626 -128789818 + AT_rich Low_complexity Low_complexity 1 67 0 1562 184 63 25 chr9 13481770 13482134 -128789310 + MLT1C LTR MaLR 89 466 -1 21 0 0 0 chr9 13482389 13482410 -128789034 + AT_rich Low_complexity Low_complexity 1 21 0 10216 30 1 10 chr9 13483785 13485777 -128785667 + L1PA4 LINE L1 4168 6151 -4 189 0 0 0 chr9 13485787 13485808 -128785636 + (TAAAAA)n Simple_repeat Simple_repeat 3 23 0 447 341 29 6 chr9 13485831 13486004 -128785440 + LTR16A1 LTR ERVL 226 402 -55 547 313 110 19 chr9 13486666 13487157 -128784287 - L1MEc LINE L1 -4902 1533 947 188 0 74 0 chr9 13487706 13487733 -128783711 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 330 306 24 47 chr9 13488263 13488433 -128783011 - MLT1J2 LTR MaLR -33 417 252 978 199 11 0 chr9 13488465 13488641 -128782803 + U2 snRNA snRNA 1 178 -10 625 82 49 8 chr9 13488671 13488793 -128782651 + GA-rich Low_complexity Low_complexity 2 128 0 2579 241 41 4 chr9 13489369 13490128 -128781316 + L1MC1 LINE L1 4540 5326 -820 951 210 0 5 chr9 13490129 13490315 -128781129 + AluJb SINE Alu 128 312 0 4943 172 45 30 chr9 13490319 13490901 -128780543 + L1MC1 LINE L1 5293 5899 -434 2833 118 13 45 chr9 13490901 13491369 -128780075 - MLT2A2 LTR ERVL 0 453 1 4943 172 45 30 chr9 13491369 13491801 -128779643 + L1MC1 LINE L1 5899 6323 -10 213 39 0 0 chr9 13491801 13491827 -128779617 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 375 283 31 102 chr9 13493147 13493373 -128778071 - HAL1 LINE L1 -938 1569 1360 349 337 26 26 chr9 13494183 13494376 -128777068 - L1MEc LINE L1 -4435 1961 1769 26 64 0 0 chr9 13494793 13494840 -128776604 + AT_rich Low_complexity Low_complexity 1 47 0 1047 259 58 10 chr9 13495236 13495693 -128775751 - MER92B LTR ERV1 -2 552 1 1673 204 7 3 chr9 13495784 13496093 -128775351 + AluJo SINE Alu 1 310 -2 245 29 29 0 chr9 13496102 13496136 -128775308 + (GAA)n Simple_repeat Simple_repeat 3 37 0 402 271 54 54 chr9 13496831 13497089 -128774355 + MER34B LTR ERV1 304 561 -4 446 251 53 16 chr9 13497100 13497287 -128774157 - MER67C LTR ERV1 -19 691 498 238 281 70 8 chr9 13497373 13497501 -128773943 - MER67C LTR ERV1 -538 172 37 365 109 0 0 chr9 13497730 13497785 -128773659 + MER89 LTR ERV1 1 55 -504 1460 120 20 83 chr9 13497787 13498088 -128773356 - MER52C LTR ERV1 0 1278 997 1438 212 70 47 chr9 13498076 13498620 -128772824 - MER52A LTR ERV1 -549 729 1 * 1713 214 96 43 chr9 13498650 13499117 -128772327 + MER89 LTR ERV1 68 559 0 1646 187 48 3 chr9 13499214 13499588 -128771856 + L1 LINE L1 3104 3494 -2652 25 0 0 0 chr9 13499717 13499742 -128771702 + AT_rich Low_complexity Low_complexity 1 25 0 201 94 0 0 chr9 13500132 13500164 -128771280 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1874 154 146 11 chr9 13500304 13500681 -128770763 - MSTA LTR MaLR 0 428 1 1551 63 14 5 chr9 13502205 13502426 -128769018 - L1PA13 LINE L1 -1 6162 5940 264 303 0 26 chr9 13502648 13502724 -128768720 - tRNA-Glu-GAG tRNA tRNA 0 75 2 2063 199 101 81 chr9 13502724 13503454 -128767990 - MER31-int LTR ERV1 -5115 1216 472 422 295 7 14 chr9 13503454 13503593 -128767851 - LTR29 LTR ERV1 -252 370 233 351 253 273 5 chr9 13503603 13503749 -128767695 - MER39 LTR ERV1 -574 133 1 443 257 0 9 chr9 13503750 13503863 -128767581 - MER67D LTR ERV1 -402 112 1 1268 268 80 14 chr9 13503900 13504230 -128767214 - MER31-int LTR ERV1 -1135 3801 3434 189 0 0 0 chr9 13504230 13504251 -128767193 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 1268 268 80 14 chr9 13504251 13504356 -128767088 - MER31-int LTR ERV1 -1502 3434 3337 803 249 42 54 chr9 13505132 13505466 -128765978 - MER31-int LTR ERV1 -1883 3053 2724 * 1741 251 101 70 chr9 13505454 13506837 -128764607 - MER31-int LTR ERV1 -2325 2611 1095 1718 216 15 48 chr9 13506837 13507295 -128764149 + LTR47B LTR ERVL 1 443 0 1741 251 101 70 chr9 13507295 13507665 -128763779 - MER31-int LTR ERV1 -3841 1095 738 2154 135 28 0 chr9 13507900 13508226 -128763218 + MER1B DNA MER1_type 2 336 -1 2210 92 7 3 chr9 13509015 13509320 -128762124 - AluY SINE Alu -5 306 1 876 214 74 72 chr9 13510290 13510762 -128760682 - MER92C LTR ERV1 -2 552 1 288 77 0 0 chr9 13511920 13511959 -128759485 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 237 336 67 51 chr9 13512143 13512593 -128758851 - HAL1b LINE L1 -661 687 231 275 284 153 34 chr9 13512660 13512794 -128758650 + MIR SINE MIR 63 224 -38 884 206 44 136 chr9 13512794 13513206 -128758238 + MLT1A2 LTR MaLR 1 374 0 275 284 153 34 chr9 13513206 13513247 -128758197 + MIR SINE MIR 224 259 -3 22 70 0 0 chr9 13513353 13513396 -128758048 + AT_rich Low_complexity Low_complexity 1 43 0 211 217 0 22 chr9 13513505 13513551 -128757893 + CT-rich Low_complexity Low_complexity 4 48 0 222 118 0 0 chr9 13514602 13514636 -128756808 + (TG)n Simple_repeat Simple_repeat 2 35 0 254 336 66 69 chr9 13514820 13515183 -128756261 + MLT1J LTR MaLR 5 366 -145 556 270 152 5 chr9 13516367 13516571 -128754873 - MIR SINE MIR -28 234 1 207 0 0 0 chr9 13516926 13516949 -128754495 + (CA)n Simple_repeat Simple_repeat 2 24 0 278 215 13 0 chr9 13517823 13517902 -128753542 + (TCCA)n Simple_repeat Simple_repeat 2 81 0 391 244 109 67 chr9 13517915 13518108 -128753336 - L2 LINE L2 0 3313 3113 1151 120 17 0 chr9 13518109 13518284 -128753160 + L1MA9 LINE L1 5986 6163 -149 390 129 0 14 chr9 13518285 13518355 -128753089 + L1MA9 LINE L1 6239 6307 -5 2120 135 0 0 chr9 13518470 13518782 -128752662 - AluSx SINE Alu 0 312 1 589 312 18 52 chr9 13518782 13519064 -128752380 - L2 LINE L2 -263 3050 2777 901 247 55 105 chr9 13519144 13519634 -128751810 - MLT1G1 LTR MaLR -115 452 1 1178 308 108 31 chr9 13519635 13519789 -128751655 - L2 LINE L2 -527 2787 2646 2314 88 3 3 chr9 13519789 13520097 -128751347 + AluSc SINE Alu 1 308 -1 1178 308 108 31 chr9 13520097 13520589 -128750855 - L2 LINE L2 -668 2646 2091 21 0 0 0 chr9 13521238 13521259 -128750185 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 13521345 13521373 -128750071 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 13521607 13521628 -128749816 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 13523124 13523146 -128748298 + AT_rich Low_complexity Low_complexity 1 22 0 235 374 40 52 chr9 13525116 13525290 -128746154 + L2 LINE L2 2175 2346 -968 337 260 75 55 chr9 13526700 13526846 -128744598 - MIR SINE MIR -48 214 66 581 175 42 121 chr9 13527336 13527502 -128743942 + MER2 DNA MER2_type 188 340 -5 1010 252 119 7 chr9 13527550 13527852 -128743592 - L2 LINE L2 -525 2789 2454 250 333 0 43 chr9 13527940 13528033 -128743411 - MIR SINE MIR -125 137 49 21 36 0 0 chr9 13528540 13528568 -128742876 + AT_rich Low_complexity Low_complexity 1 28 0 2155 105 0 26 chr9 13528749 13529062 -128742382 + AluSg SINE Alu 6 310 0 24 32 0 0 chr9 13529099 13529130 -128742314 + AT_rich Low_complexity Low_complexity 1 31 0 1623 137 19 0 chr9 13529130 13529401 -128742043 - L1PB1 LINE L1 0 6151 5876 3696 153 15 1 chr9 13529403 13530380 -128741064 - L1PB1 LINE L1 -376 5775 4792 1234 196 0 15 chr9 13530376 13530641 -128740803 + L1PB1 LINE L1 4545 4805 -1341 * 983 243 86 86 chr9 13530978 13531422 -128740022 - L1MD2 LINE L1 -218 6141 5698 3619 249 66 59 chr9 13531426 13532701 -128738743 + L1M2a LINE L1 4 1145 -6023 5142 228 38 11 chr9 13532734 13534741 -128736703 + L1M2a LINE L1 1618 3679 -3488 677 100 46 15 chr9 13534735 13534865 -128736579 + L1M LINE L1 5295 5428 -872 * 1179 204 127 8 chr9 13535095 13535457 -128735987 - L1 LINE L1 -1510 4636 4232 835 281 70 23 chr9 13535830 13536132 -128735312 + L2 LINE L2 2997 3312 -1 413 315 73 69 chr9 13536451 13536505 -128734939 - MIR SINE MIR -1 261 209 2060 118 0 3 chr9 13536505 13536820 -128734624 - AluSx SINE Alu 0 314 1 413 315 73 69 chr9 13536820 13537023 -128734421 - MIR SINE MIR -53 209 1 227 301 169 0 chr9 13537048 13537131 -128734313 - MIR3 SINE MIR -17 191 95 432 0 0 0 chr9 13537361 13537409 -128734035 + (CA)n Simple_repeat Simple_repeat 1 48 0 692 277 25 22 chr9 13538061 13538335 -128733109 - L1MD2 LINE L1 -15 6344 6070 * 1696 230 43 22 chr9 13538304 13538807 -128732637 - L1MD2 LINE L1 -88 6076 5551 266 87 22 0 chr9 13539759 13539805 -128731639 + (CCTA)n Simple_repeat Simple_repeat 1 47 0 548 336 6 6 chr9 13540820 13541013 -128730431 - MIR SINE MIR -39 223 33 1649 177 13 13 chr9 13541035 13541335 -128730109 - AluJo SINE Alu -12 300 1 915 153 17 17 chr9 13541641 13541818 -128729626 + L1MC1 LINE L1 6156 6332 -1 814 238 0 0 chr9 13542341 13542513 -128728931 + FAM SINE Alu 1 172 -3 24 0 0 0 chr9 13542513 13542537 -128728907 + AT_rich Low_complexity Low_complexity 1 24 0 203 208 19 0 chr9 13542706 13542759 -128728685 + (TA)n Simple_repeat Simple_repeat 2 55 0 1919 107 17 20 chr9 13542854 13543154 -128728290 - AluSg1 SINE Alu -10 299 1 1123 47 0 0 chr9 13543331 13543460 -128727984 + AluY SINE Alu 1 129 -182 2488 38 3 0 chr9 13543675 13543965 -128727479 + AluY SINE Alu 1 291 -20 46 33 0 0 chr9 13544943 13545003 -128726441 + AT_rich Low_complexity Low_complexity 1 60 0 2084 97 16 10 chr9 13545387 13545695 -128725749 + AluY SINE Alu 1 310 -1 24 0 0 0 chr9 13545785 13545809 -128725635 + AT_rich Low_complexity Low_complexity 1 24 0 1161 231 98 34 chr9 13546189 13546575 -128724869 + MER92A LTR ERV1 2 412 0 264 298 60 66 chr9 13546845 13547147 -128724297 + MER92A-int LTR ERV1 198 497 -4439 258 410 18 6 chr9 13547933 13548099 -128723345 + MER31-int LTR ERV1 2539 2706 -4095 1573 93 12 57 chr9 13548443 13548690 -128722754 - AluSp SINE Alu -14 299 64 397 297 67 68 chr9 13548889 13549511 -128721933 + MER31-int LTR ERV1 3237 4948 -3309 231 36 0 0 chr9 13549610 13549638 -128721806 + (A)n Simple_repeat Simple_repeat 1 28 0 389 320 81 12 chr9 13549785 13549957 -128721487 + MER31-int LTR ERV1 751 934 -4002 3298 35 4 0 chr9 13550091 13551053 -128720391 - L1PA4 LINE L1 -1 6154 5037 * 4037 39 0 0 chr9 13551052 13551542 -128719902 + L1PA4 LINE L1 4548 5037 -1109 1513 214 14 82 chr9 13552014 13552429 -128719015 + MLT1B LTR MaLR 1 387 -3 1605 261 5 19 chr9 13553969 13554379 -128717065 + MER92A LTR ERV1 1 404 -8 3028 151 20 2 chr9 13554953 13555456 -128715988 + MER41E LTR ERV1 1 512 0 232 271 0 0 chr9 13555475 13555534 -128715910 - MLT1I LTR MaLR 0 409 351 300 247 180 34 chr9 13556072 13556250 -128715194 + MLT1L LTR MaLR 405 608 -7 23 0 0 0 chr9 13556305 13556328 -128715116 + AT_rich Low_complexity Low_complexity 1 23 0 1701 177 126 26 chr9 13556373 13556762 -128714682 + MSTA LTR MaLR 1 428 0 6880 151 166 39 chr9 13556764 13558164 -128713280 + MSTA-int LTR MaLR 3 1580 0 1697 180 136 18 chr9 13558164 13558547 -128712897 + MSTA LTR MaLR 1 428 0 354 45 0 0 chr9 13559200 13559244 -128712200 + (TC)n Simple_repeat Simple_repeat 1 44 0 342 0 0 0 chr9 13559243 13559281 -128712163 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 276 284 11 11 chr9 13560063 13560158 -128711286 + CT-rich Low_complexity Low_complexity 2 96 0 531 309 25 6 chr9 13560875 13561037 -128710407 - MIR SINE MIR -50 212 48 21 0 0 0 chr9 13561145 13561166 -128710278 + AT_rich Low_complexity Low_complexity 1 21 0 790 294 97 98 chr9 13561285 13562471 -128708973 - L2 LINE L2 -60 3253 2084 520 206 0 66 chr9 13562568 13562704 -128708740 + MLT1C LTR MaLR 11 137 -330 255 301 0 0 chr9 13562705 13562788 -128708656 + MLT1D LTR MaLR 414 496 -9 24 0 0 0 chr9 13563692 13563716 -128707728 + AT_rich Low_complexity Low_complexity 1 24 0 251 234 0 16 chr9 13563727 13563791 -128707653 - L1ME3A LINE L1 -35 6135 6073 33 43 0 0 chr9 13563883 13563930 -128707514 + AT_rich Low_complexity Low_complexity 1 47 0 289 300 0 0 chr9 13563942 13564042 -128707402 - L1M4 LINE L1 -1817 4329 4230 2123 178 28 30 chr9 13564753 13565186 -128706258 + MSTB1 LTR MaLR 1 432 0 383 222 51 51 chr9 13565421 13565538 -128705906 + LTR16C LTR ERVL 316 432 -59 321 26 0 0 chr9 13565604 13565642 -128705802 + (TA)n Simple_repeat Simple_repeat 1 38 0 429 109 0 0 chr9 13566215 13566279 -128705165 + (TA)n Simple_repeat Simple_repeat 1 64 0 1372 208 13 35 chr9 13568092 13568405 -128703039 - AluJo SINE Alu -6 306 1 21 82 0 0 chr9 13568520 13568569 -128702875 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr9 13569053 13569074 -128702370 + AT_rich Low_complexity Low_complexity 1 21 0 2818 68 32 20 chr9 13569710 13570273 -128701171 + L1PA5 LINE L1 5201 6141 -13 1307 117 40 0 chr9 13570274 13570497 -128700947 + L1PB1 LINE L1 5362 5592 -559 2190 55 0 0 chr9 13570500 13570773 -128700671 - L1PA8 LINE L1 0 6172 5900 1179 142 0 0 chr9 13570783 13570966 -128700478 + L1PB1 LINE L1 5796 5978 -173 505 42 0 0 chr9 13570968 13571039 -128700405 + L1PB1 LINE L1 6079 6149 -2 264 408 22 6 chr9 13571056 13571235 -128700209 - LTR16C LTR ERVL -179 312 131 2117 121 0 3 chr9 13571611 13571918 -128699526 + AluSg SINE Alu 1 306 -4 1282 253 110 22 chr9 13572161 13572901 -128698543 + L1ME2 LINE L1 5325 6145 -19 2305 65 3 3 chr9 13573022 13573314 -128698130 + AluY SINE Alu 1 292 -19 231 287 124 0 chr9 13573345 13573547 -128697897 + L1M4 LINE L1 2159 2385 -3761 415 187 0 44 chr9 13573745 13573836 -128697608 - MLT1E2 LTR MaLR -453 173 87 1044 93 35 6 chr9 13573853 13574025 -128697419 - L1MA6 LINE L1 0 6300 6124 1804 120 94 7 chr9 13574090 13574389 -128697055 + THE1A LTR MaLR 31 355 0 442 202 10 10 chr9 13574391 13574495 -128696949 - L1MA6 LINE L1 -208 6092 5989 684 106 9 0 chr9 13574511 13574624 -128696820 - L1MC3 LINE L1 -746 7039 6926 969 252 38 33 chr9 13574690 13575254 -128696190 - L1ME LINE L1 -580 5586 5029 507 217 89 56 chr9 13575271 13575443 -128696001 - L1 LINE L1 -1194 4952 4776 343 191 71 12 chr9 13575468 13575552 -128695892 + MIR SINE MIR 140 228 -34 825 103 0 0 chr9 13576747 13576863 -128694581 - L1P LINE L1 -4481 1665 1550 20781 47 7 2 chr9 13576863 13580244 -128691200 + L1PA5 LINE L1 2776 6148 -6 1670 202 124 5 chr9 13581002 13581413 -128690031 + MLT1C LTR MaLR 1 460 -7 3219 130 4 103 chr9 13581886 13582563 -128688881 + MER4B LTR ERV1 1 610 0 1112 110 0 19 chr9 13582901 13583055 -128688389 - AluSq/x SINE Alu -162 151 1 718 306 31 9 chr9 13583219 13583448 -128687996 - MIR SINE MIR -22 240 7 3281 66 0 2 chr9 13583725 13584149 -128687295 + L1PA7 LINE L1 5728 6150 -4 2393 301 90 28 chr9 13584311 13585534 -128685910 - L1MEc LINE L1 -5063 1333 35 283 270 0 0 chr9 13586251 13586314 -128685130 - MER5A DNA MER1_type -120 69 7 2558 134 44 2 chr9 13586675 13587084 -128684360 - MSTA LTR MaLR -2 426 1 5210 166 35 27 chr9 13587366 13587432 -128684012 - L1MA8 LINE L1 -3 6288 6224 508 43 145 0 chr9 13587432 13587501 -128683943 + MADE1 DNA Mariner 2 80 0 5210 166 35 27 chr9 13587501 13588916 -128682528 - L1MA8 LINE L1 -67 6224 4802 5686 66 4 0 chr9 13590329 13591069 -128680375 - L1PA8 LINE L1 -6 6166 5424 21 0 0 0 chr9 13591430 13591451 -128679993 + AT_rich Low_complexity Low_complexity 1 21 0 756 65 0 0 chr9 13591954 13592061 -128679383 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 25 90 0 0 chr9 13592087 13592154 -128679290 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr9 13592221 13592244 -128679200 + AT_rich Low_complexity Low_complexity 1 23 0 42390 36 21 3 chr9 13592583 13598621 -128672823 - L1PA3 LINE L1 0 6155 3 415 216 62 0 chr9 13598861 13598958 -128672486 - L1ME1 LINE L1 -190 6256 6154 336 216 36 33 chr9 13598963 13599094 -128672350 - L1ME1 LINE L1 -680 5774 5643 680 194 18 18 chr9 13599094 13599264 -128672180 - L1MA4 LINE L1 -5 6295 6126 480 221 55 21 chr9 13599271 13599416 -128672028 - L1M3f LINE L1 -5164 164 15 3340 224 53 99 chr9 13599428 13600193 -128671251 - L1ME1 LINE L1 -783 5643 4844 2983 114 16 5 chr9 13600193 13600630 -128670814 - MLT2A1 LTR ERVL -2 442 1 3340 224 53 99 chr9 13600630 13601671 -128669773 - L1ME1 LINE L1 -1582 4844 3921 1920 151 0 7 chr9 13601808 13602119 -128669325 - AluSx SINE Alu 0 309 1 548 199 7 28 chr9 13602180 13602321 -128669123 - L1ME1 LINE L1 -4474 1952 1815 7149 183 31 6 chr9 13602324 13602737 -128668707 + L1 LINE L1 3566 3967 -2179 6244 113 25 39 chr9 13602737 13603759 -128667685 + LTR13 LTR ERVK 1 1007 0 7149 183 31 6 chr9 13603759 13604268 -128667176 + L1 LINE L1 3967 4462 -1684 216 0 0 0 chr9 13604268 13604292 -128667152 + (CA)n Simple_repeat Simple_repeat 2 25 0 7149 183 31 6 chr9 13604292 13604844 -128666600 + L1 LINE L1 4462 5078 -1068 560 133 0 0 chr9 13604946 13605044 -128666400 + L1MA4 LINE L1 6198 6295 -5 990 198 60 16 chr9 13605071 13605387 -128666057 - L1ME1 LINE L1 -4547 1879 1413 283 259 0 0 chr9 13605477 13605535 -128665909 - HsTC2 DNA Tc2 -1747 151 94 207 0 0 0 chr9 13605630 13605653 -128665791 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3281 78 39 0 chr9 13605761 13606197 -128665247 + MLT2A2 LTR ERVL 1 453 0 27 29 0 0 chr9 13606257 13606291 -128665153 + AT_rich Low_complexity Low_complexity 1 34 0 506 245 32 16 chr9 13606394 13606582 -128664862 - MER69 DNA AcHobo -4 2522 2332 232 324 0 0 chr9 13606583 13606651 -128664793 - MER69 DNA AcHobo -2454 72 5 257 369 80 23 chr9 13606815 13606991 -128664453 - MIR3 SINE MIR -7 201 16 182 386 10 20 chr9 13609005 13609106 -128662338 + MER5A DNA MER1_type 45 144 -45 638 199 118 39 chr9 13609129 13609380 -128662064 - Charlie2 DNA MER1_type -10 2852 2567 1957 46 0 4 chr9 13609380 13609619 -128661825 + AluY SINE Alu 74 311 0 638 199 118 39 chr9 13609619 13609698 -128661746 - Charlie2 DNA MER1_type -295 2567 2496 591 254 40 22 chr9 13609718 13609993 -128661451 - L1MC5 LINE L1 -53 7908 7629 711 186 124 11 chr9 13610119 13610296 -128661148 + MER3 DNA MER1_type 5 201 -8 920 247 69 10 chr9 13610386 13610690 -128660754 - L1MC5 LINE L1 -535 7426 7105 488 239 26 0 chr9 13610691 13610804 -128660640 + FLAM_A SINE Alu 1 116 -17 210 128 0 0 chr9 13610809 13610848 -128660596 + (GA)n Simple_repeat Simple_repeat 1 39 0 528 228 35 14 chr9 13610848 13610993 -128660451 - L1MC5 LINE L1 -843 7118 6971 2310 97 0 10 chr9 13611008 13611317 -128660127 - AluY SINE Alu -5 306 1 236 340 53 44 chr9 13613517 13613723 -128657721 + L2 LINE L2 1739 1946 -1368 254 313 21 0 chr9 13613819 13613915 -128657529 + L2 LINE L2 1974 2071 -1243 444 366 33 36 chr9 13613925 13614258 -128657186 + L2 LINE L2 2825 3156 -157 30 59 0 0 chr9 13614283 13614334 -128657110 + AT_rich Low_complexity Low_complexity 1 51 0 226 354 13 0 chr9 13614371 13614450 -128656994 + L2 LINE L2 3234 3313 0 441 257 81 0 chr9 13614667 13614803 -128656641 - L1M3 LINE L1 -552 5628 5482 * 958 205 51 77 chr9 13614779 13615125 -128656319 + L1MB7 LINE L1 5856 6178 0 378 308 65 33 chr9 13615230 13615444 -128656000 - L1M3 LINE L1 -1774 4372 4152 25760 159 12 17 chr9 13615695 13622170 -128649274 + L1PA8 LINE L1 14 6487 0 21 0 0 0 chr9 13622321 13622342 -128649102 + AT_rich Low_complexity Low_complexity 1 21 0 556 169 145 6 chr9 13622551 13622717 -128648727 + AluSg/x SINE Alu 117 305 -4 34 42 0 0 chr9 13622827 13622875 -128648569 + AT_rich Low_complexity Low_complexity 1 48 0 309 372 54 0 chr9 13623492 13623640 -128647804 - MLT1K LTR MaLR -197 391 236 259 371 91 8 chr9 13623900 13624164 -128647280 + L2 LINE L2 2534 2819 -495 2089 61 93 4 chr9 13625343 13625622 -128645822 + AluY SINE Alu 1 304 -7 2285 108 0 0 chr9 13626058 13626364 -128645080 + AluY SINE Alu 1 306 -5 186 43 0 0 chr9 13626647 13626670 -128644774 + (TC)n Simple_repeat Simple_repeat 2 24 0 1161 182 108 130 chr9 13626961 13627368 -128644076 - MLT2B2 LTR ERVL 0 515 118 270 0 0 0 chr9 13627375 13627405 -128644039 + (GA)n Simple_repeat Simple_repeat 2 31 0 538 160 150 0 chr9 13627405 13627505 -128643939 - MLT2B3 LTR ERVL -322 232 118 198 0 0 0 chr9 13627512 13627534 -128643910 + (GA)n Simple_repeat Simple_repeat 2 23 0 544 160 150 0 chr9 13627534 13627634 -128643810 - MLT2B3 LTR ERVL -322 232 118 216 0 0 0 chr9 13627641 13627665 -128643779 + (GA)n Simple_repeat Simple_repeat 2 25 0 528 170 150 0 chr9 13627665 13627765 -128643679 - MLT2B3 LTR ERVL -322 232 118 1183 190 69 0 chr9 13627791 13628007 -128643437 - MLT2B3 LTR ERVL -323 231 1 402 380 79 0 chr9 13628013 13628242 -128643202 + MIR SINE MIR 13 259 -3 1475 210 39 47 chr9 13628805 13629038 -128642406 - MLT1B LTR MaLR -12 378 148 2422 73 0 13 chr9 13629038 13629353 -128642091 + AluY SINE Alu 1 311 0 1475 210 39 47 chr9 13629353 13629500 -128641944 - MLT1B LTR MaLR -242 148 1 692 271 40 29 chr9 13629932 13630205 -128641239 + LTR16A LTR ERVL 86 361 -89 4849 161 11 14 chr9 13630305 13630793 -128640651 + L1PB4 LINE L1 4950 5438 -718 1655 196 3 3 chr9 13630793 13631089 -128640355 + AluJb SINE Alu 3 298 -14 4849 161 11 14 chr9 13631089 13631797 -128639647 + L1PB4 LINE L1 5438 6149 -7 204 284 0 74 chr9 13632136 13632217 -128639227 + L2 LINE L2 3161 3235 -37 914 197 110 99 chr9 13632534 13633069 -128638375 + MER67C LTR ERV1 1 466 0 279 221 79 57 chr9 13633853 13633993 -128637451 - L1ME4a LINE L1 -11 6110 5968 562 332 49 0 chr9 13634014 13634219 -128637225 - MIR SINE MIR -27 235 21 423 293 56 26 chr9 13634220 13634486 -128636958 - L1ME4a LINE L1 -335 5786 5513 23 54 0 0 chr9 13634573 13634610 -128636834 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr9 13635173 13635196 -128636248 + AT_rich Low_complexity Low_complexity 1 23 0 266 315 52 56 chr9 13635284 13635497 -128635947 - L2 LINE L2 -6 3307 3096 23 0 0 0 chr9 13636114 13636137 -128635307 + AT_rich Low_complexity Low_complexity 1 23 0 473 219 10 0 chr9 13637103 13637199 -128634245 + Charlie5 DNA MER1_type 142 238 -2374 233 98 24 0 chr9 13637213 13637254 -128634190 + Charlie5 DNA MER1_type 2530 2571 -41 1324 198 20 3 chr9 13637259 13637557 -128633887 - L1MA7 LINE L1 -1 6290 5988 258 333 12 42 chr9 13637610 13637778 -128633666 - MIR SINE MIR -1 261 99 270 0 0 0 chr9 13637874 13637904 -128633540 + (TG)n Simple_repeat Simple_repeat 2 31 0 5726 154 36 7 chr9 13638724 13639739 -128631705 + L1MC1 LINE L1 5288 6332 -1 1234 170 0 5 chr9 13639920 13640120 -128631324 + AluJb SINE Alu 85 283 -29 859 159 10 66 chr9 13640147 13640345 -128631099 + L1MC1 LINE L1 6037 6211 -122 772 278 53 56 chr9 13641239 13641706 -128629738 + L1ME LINE L1 490 955 -5575 765 278 138 47 chr9 13641694 13642412 -128629032 + L1ME LINE L1 846 1593 -4947 * 1295 251 86 53 chr9 13642393 13643760 -128627684 + L1ME LINE L1 1889 3292 -3248 26 0 0 0 chr9 13644151 13644177 -128627267 + AT_rich Low_complexity Low_complexity 1 26 0 828 256 89 63 chr9 13644622 13645051 -128626393 - MER67D LTR ERV1 -8 506 67 44 0 0 0 chr9 13645355 13645399 -128626045 + AT_rich Low_complexity Low_complexity 1 44 0 282 363 16 44 chr9 13645797 13645979 -128625465 - MIR SINE MIR -82 180 4 228 111 0 0 chr9 13647056 13647092 -128624352 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 333 0 0 0 chr9 13647234 13647271 -128624173 + (TG)n Simple_repeat Simple_repeat 1 37 0 192 77 0 0 chr9 13647486 13647512 -128623932 + (CAG)n Simple_repeat Simple_repeat 1 26 0 947 236 81 24 chr9 13649189 13649650 -128621794 - MLT1E1 LTR MaLR 0 593 119 1994 252 101 24 chr9 13649937 13650875 -128620569 - L1MEc LINE L1 -2843 4114 3104 1910 292 17 10 chr9 13650877 13651463 -128619981 + MER90 LTR ERV1 1 590 -24 1570 277 76 27 chr9 13651499 13652060 -128619384 - L1MEc LINE L1 -4011 3127 2504 2840 150 8 10 chr9 13652060 13652548 -128618896 - L1PA16 LINE L1 -3 6163 5677 1570 277 76 27 chr9 13652548 13652899 -128618545 - L1MEc LINE L1 -4634 2504 2171 325 246 188 29 chr9 13652913 13653190 -128618254 - L1MC5 LINE L1 -36 7925 7605 1740 176 80 41 chr9 13653191 13653730 -128617714 - MLT2A2 LTR ERVL -2 552 1 22 0 0 0 chr9 13653745 13653767 -128617677 + AT_rich Low_complexity Low_complexity 1 22 0 1988 110 0 4 chr9 13653881 13654186 -128617258 - AluY SINE Alu 0 304 1 275 343 106 25 chr9 13654423 13654668 -128616776 + L2 LINE L2 1707 1971 -1343 342 0 0 0 chr9 13654861 13654899 -128616545 + (TC)n Simple_repeat Simple_repeat 1 38 0 416 302 76 44 chr9 13654967 13655206 -128616238 - MLT1F LTR MaLR -291 264 19 1185 160 9 5 chr9 13655321 13655540 -128615904 - L1MA5A LINE L1 -6 6291 6072 301 327 60 22 chr9 13655614 13655931 -128615513 - L1MEc LINE L1 -4864 2093 1781 247 263 0 0 chr9 13655937 13655994 -128615450 - L1PA16 LINE L1 -15 6151 6095 * 799 237 39 2 chr9 13655963 13656190 -128615254 - L1PA16 LINE L1 -73 6092 5858 514 289 102 29 chr9 13656191 13656485 -128614959 - L1MEc LINE L1 -5223 1738 1373 2318 69 3 31 chr9 13656790 13657109 -128614335 - AluY SINE Alu -1 310 1 30 45 0 0 chr9 13657726 13657770 -128613674 + AT_rich Low_complexity Low_complexity 1 44 0 243 300 69 85 chr9 13658808 13658938 -128612506 - L2 LINE L2 -8 3264 3137 331 300 27 18 chr9 13658969 13659079 -128612365 + MER91B DNA MER1_type 19 129 -61 271 161 0 0 chr9 13659553 13659609 -128611835 + L1MC4 LINE L1 6648 6703 -1339 217 146 55 0 chr9 13659757 13659812 -128611632 + (TA)n Simple_repeat Simple_repeat 2 59 0 282 330 199 23 chr9 13661192 13661413 -128610031 - MLT1K LTR MaLR -201 387 128 996 190 10 10 chr9 13661853 13662058 -128609386 + MER3 DNA MER1_type 1 205 -4 685 243 60 46 chr9 13662940 13663158 -128608286 + MIR SINE MIR 41 261 -1 371 65 32 0 chr9 13663744 13663806 -128607638 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 307 339 34 25 chr9 13666175 13666293 -128605151 + L2 LINE L2 3144 3262 -10 1149 227 131 28 chr9 13666673 13667083 -128604361 - MER66A LTR ERV1 -4 474 122 691 310 24 20 chr9 13667182 13667437 -128604007 - MER90 LTR ERV1 -1 613 358 216 0 0 0 chr9 13667437 13667461 -128603983 + (T)n Simple_repeat Simple_repeat 1 24 0 2321 77 6 16 chr9 13668391 13668704 -128602740 + AluY SINE Alu 1 310 -1 456 315 30 75 chr9 13669351 13669535 -128601909 - MLT1K LTR MaLR -2 586 418 216 0 0 0 chr9 13669535 13669559 -128601885 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 456 315 30 75 chr9 13669559 13669669 -128601775 - MLT1K LTR MaLR -170 418 305 363 313 125 11 chr9 13669671 13669847 -128601597 + LTR16C LTR ERVL 4 199 -292 550 230 32 0 chr9 13669914 13670040 -128601404 + LTR16C LTR ERVL 358 487 -4 13265 147 33 20 chr9 13670668 13673057 -128598387 + Tigger1 DNA MER2_type 1 2418 0 320 337 89 0 chr9 13674594 13674695 -128596749 + MIR3 SINE MIR 84 193 -15 24 53 0 0 chr9 13675104 13675142 -128596302 + AT_rich Low_complexity Low_complexity 1 38 0 602 255 24 106 chr9 13675856 13676111 -128595333 - MIR SINE MIR -24 238 5 251 439 14 0 chr9 13676267 13676415 -128595029 + MIR3 SINE MIR 31 180 -28 183 410 0 48 chr9 13678169 13678274 -128593170 + MIR SINE MIR 16 115 -93 609 319 47 21 chr9 13678931 13679166 -128592278 + LTR33 LTR ERVL 10 250 -271 6816 35 4 0 chr9 13679336 13680155 -128591289 - L1PA5 LINE L1 0 6154 5333 467 330 73 31 chr9 13681028 13681452 -128589992 + MLT1J1 LTR MaLR 1 442 -4 21 0 0 0 chr9 13681489 13681510 -128589934 + AT_rich Low_complexity Low_complexity 1 21 0 209 373 125 25 chr9 13681624 13682056 -128589388 - L2 LINE L2 -26 3287 2813 1205 322 99 6 chr9 13682144 13682657 -128588787 + MLT1G1 LTR MaLR 3 563 -32 646 322 46 21 chr9 13682712 13682951 -128588493 + MIR SINE MIR 7 251 -11 207 0 0 0 chr9 13683331 13683354 -128588090 + (A)n Simple_repeat Simple_repeat 1 23 0 624 109 0 157 chr9 13683779 13683926 -128587518 + AluSg/x SINE Alu 159 282 -30 22 0 0 0 chr9 13684055 13684077 -128587367 + AT_rich Low_complexity Low_complexity 1 22 0 375 270 111 21 chr9 13684092 13684281 -128587163 - MIR SINE MIR -47 215 10 4158 184 29 55 chr9 13684702 13686052 -128585392 + L1MA6 LINE L1 4991 6295 -5 1504 104 101 56 chr9 13686064 13686332 -128585112 + AluY SINE Alu 19 298 -13 238 188 16 47 chr9 13687119 13687183 -128584261 + CT-rich Low_complexity Low_complexity 5 66 0 1515 114 61 8 chr9 13688474 13688720 -128582724 + MER44D DNA MER2_type 2 530 -79 1393 174 87 53 chr9 13688721 13689097 -128582347 - MER66A LTR ERV1 -3 475 97 1918 177 49 38 chr9 13689119 13689662 -128581782 - MLT2A2 LTR ERVL 0 554 1 279 246 18 0 chr9 13689843 13689900 -128581544 + MER44D DNA MER2_type 547 604 -1 22 0 0 0 chr9 13690350 13690372 -128581072 + AT_rich Low_complexity Low_complexity 1 22 0 509 271 93 19 chr9 13690946 13691160 -128580284 - MIR SINE MIR -1 261 32 210 133 67 50 chr9 13691211 13691271 -128580173 + MIR SINE MIR 106 166 -96 721 311 37 87 chr9 13691429 13691778 -128579666 + L2 LINE L2 2620 2912 -401 2215 105 0 3 chr9 13691778 13692083 -128579361 - AluY SINE Alu -7 304 1 721 311 37 87 chr9 13692083 13692466 -128578978 + L2 LINE L2 2912 3313 0 23 0 0 0 chr9 13692883 13692906 -128578538 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 13693036 13693059 -128578385 + AT_rich Low_complexity Low_complexity 1 23 0 204 125 0 0 chr9 13693385 13693417 -128578027 + (T)n Simple_repeat Simple_repeat 1 32 0 223 308 100 50 chr9 13694583 13694703 -128576741 + MIR3 SINE MIR 2 127 -81 181 324 27 97 chr9 13698157 13698342 -128573102 - MIR3 SINE MIR -5 203 32 1162 139 53 127 chr9 13699205 13699528 -128571916 + AluJb SINE Alu 2 300 -2 232 170 30 150 chr9 13699629 13699729 -128571715 + L1ME4a LINE L1 5935 6022 -99 7630 186 37 10 chr9 13699905 13701689 -128569755 + L1M2 LINE L1 3700 5536 -743 209 379 103 0 chr9 13701757 13701873 -128569571 + MIR SINE MIR 19 146 -116 11190 206 31 34 chr9 13702806 13703193 -128568251 - L1MA4A LINE L1 -23 6982 6595 357 43 0 0 chr9 13703193 13703240 -128568204 + (TG)n Simple_repeat Simple_repeat 2 48 0 11190 206 31 34 chr9 13703240 13703566 -128567878 - L1MA4A LINE L1 -410 6595 6270 207 0 0 0 chr9 13703566 13703589 -128567855 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 11190 206 31 34 chr9 13703589 13704053 -128567391 - L1MA4A LINE L1 -735 6270 5806 1765 157 62 20 chr9 13704053 13704410 -128567034 + THE1C LTR MaLR 1 372 -3 11190 206 31 34 chr9 13704410 13705446 -128565998 - L1MA4A LINE L1 -1199 5806 4769 2020 116 7 3 chr9 13705446 13705738 -128565706 - AluY SINE Alu -18 293 1 11190 206 31 34 chr9 13705738 13708114 -128563330 - L1MA4A LINE L1 -2236 4769 2442 185 0 0 39 chr9 13708114 13708140 -128563304 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 11190 206 31 34 chr9 13708140 13708793 -128562651 - L1MA4A LINE L1 -4563 2442 1789 4536 183 38 49 chr9 13708805 13708977 -128562467 - L1PB3 LINE L1 0 6154 5982 207 0 0 0 chr9 13708977 13709000 -128562444 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1809 161 0 0 chr9 13709000 13709274 -128562170 - AluSx SINE Alu -28 284 11 4536 183 38 49 chr9 13709274 13709527 -128561917 - L1PB3 LINE L1 -171 5983 5729 222 37 0 0 chr9 13709527 13709554 -128561890 + (TG)n Simple_repeat Simple_repeat 1 27 0 4536 183 38 49 chr9 13709554 13711003 -128560441 - L1PB3 LINE L1 -425 5729 4300 4235 284 26 2 chr9 13711006 13712190 -128559254 - L1MA4A LINE L1 -5058 1791 580 653 298 0 0 chr9 13712207 13712368 -128559076 - L1MA4A LINE L1 -6368 481 321 23 33 0 0 chr9 13712400 13712430 -128559014 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr9 13712460 13712495 -128558949 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr9 13712773 13712815 -128558629 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr9 13713243 13713279 -128558165 + AT_rich Low_complexity Low_complexity 1 36 0 3211 48 0 106 chr9 13713618 13714119 -128557325 - LTR7 LTR ERV1 -2 448 1 21 0 0 0 chr9 13715289 13715310 -128556134 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr9 13717188 13717226 -128554218 + AT_rich Low_complexity Low_complexity 1 38 0 3159 188 40 1 chr9 13718416 13719133 -128552311 + L1M2 LINE L1 4697 5443 -766 2256 109 3 0 chr9 13719133 13719435 -128552009 + AluSq SINE Alu 1 303 -10 3159 188 40 1 chr9 13719435 13719460 -128551984 + L1M2 LINE L1 5443 5466 -743 2605 111 6 0 chr9 13719563 13719924 -128551520 + THE1B LTR MaLR 2 364 0 9941 118 50 8 chr9 13719926 13721441 -128550003 + THE1B-int LTR MaLR 3 1580 0 2341 134 11 0 chr9 13721443 13721801 -128549643 + THE1B LTR MaLR 3 364 0 21 0 0 0 chr9 13721861 13721882 -128549562 + AT_rich Low_complexity Low_complexity 1 21 0 300 323 88 16 chr9 13722208 13722400 -128549044 - HAL1b LINE L1 -1019 329 124 728 357 23 23 chr9 13722421 13722763 -128548681 + LTR16A LTR ERVL 72 413 -37 1235 284 99 24 chr9 13722819 13723323 -128548121 - MLT1F LTR MaLR 0 542 1 1350 270 157 18 chr9 13723346 13723850 -128547594 - MLT1E LTR MaLR -3 590 17 733 315 67 63 chr9 13723851 13724356 -128547088 + HERV16 LTR ERVL 74 580 -4416 195 290 0 32 chr9 13724786 13724848 -128546596 + MIR SINE MIR 85 144 -64 198 0 0 0 chr9 13725948 13725970 -128545474 + (TG)n Simple_repeat Simple_repeat 1 22 0 1432 183 26 95 chr9 13725974 13726363 -128545081 - MLT1B LTR MaLR -2 388 27 2261 118 0 6 chr9 13726370 13726684 -128544760 - AluSx SINE Alu 0 312 1 210 319 43 32 chr9 13728586 13728680 -128542764 - MIR SINE MIR -97 165 71 653 286 42 24 chr9 13730009 13730222 -128541222 + MIR SINE MIR 8 224 -38 471 104 0 0 chr9 13730284 13730351 -128541093 + Alu SINE Alu 1 67 -251 1105 213 47 84 chr9 13730418 13730846 -128540598 - MER92A LTR ERV1 0 412 1 912 219 16 3 chr9 13731419 13731694 -128539750 + MER89 LTR ERV1 1 378 -181 2044 120 7 10 chr9 13731735 13731868 -128539576 + AluSc SINE Alu 1 133 -176 1988 109 0 72 chr9 13731868 13732199 -128539245 + AluSg SINE Alu 1 307 -3 2044 120 7 10 chr9 13732199 13732374 -128539070 + AluSc SINE Alu 133 308 -1 2304 196 32 6 chr9 13732380 13732853 -128538591 - MER67D LTR ERV1 -33 478 1 866 196 0 50 chr9 13732853 13732967 -128538477 + MER89 LTR ERV1 369 470 -89 2336 128 6 6 chr9 13732967 13733310 -128538134 - MER61A LTR ERV1 0 343 1 866 196 0 50 chr9 13733310 13733394 -128538050 + MER89 LTR ERV1 470 557 -2 797 241 99 26 chr9 13733471 13733813 -128537631 - MSTD LTR MaLR -3 393 1 227 302 94 68 chr9 13734003 13734195 -128537249 - L2 LINE L2 -144 3169 2973 458 170 54 18 chr9 13734195 13734307 -128537137 + MER4C LTR ERV1 1 116 -349 1029 217 100 112 chr9 13734389 13734878 -128536566 + LTR34 LTR ERV1 137 695 -4 515 244 0 133 chr9 13734905 13735130 -128536314 - L2 LINE L2 -391 2923 2729 337 124 34 15 chr9 13735226 13735296 -128536148 - MER67D LTR ERV1 -392 122 64 856 203 13 4 chr9 13735632 13736096 -128535348 + CT-rich Low_complexity Low_complexity 1 468 0 202 234 0 0 chr9 13740137 13740184 -128531260 + A-rich Low_complexity Low_complexity 1 47 0 357 313 69 6 chr9 13740443 13740603 -128530841 + MIR SINE MIR 49 218 -44 2152 129 0 0 chr9 13741025 13741336 -128530108 + AluSx SINE Alu 1 311 -1 219 296 184 0 chr9 13741955 13742053 -128529391 - L2 LINE L2 -16 3256 3141 188 330 87 50 chr9 13742198 13742416 -128529028 - L2 LINE L2 -231 3041 2816 26 0 0 0 chr9 13742698 13742724 -128528720 + AT_rich Low_complexity Low_complexity 1 26 0 1728 169 14 0 chr9 13743245 13743523 -128527921 + AluJo SINE Alu 5 286 -26 218 161 32 32 chr9 13743531 13743593 -128527851 + A-rich Low_complexity Low_complexity 5 66 0 1804 112 0 0 chr9 13744181 13744432 -128527012 - AluSc SINE Alu -21 288 38 25 31 0 0 chr9 13744738 13744770 -128526674 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 13744999 13745020 -128526424 + AT_rich Low_complexity Low_complexity 1 21 0 351 292 58 18 chr9 13745138 13745309 -128526135 + L1ME LINE L1 5482 5659 -462 1284 212 48 10 chr9 13745437 13745748 -128525696 - MER33 DNA MER1_type 0 324 2 198 302 47 23 chr9 13746050 13746136 -128525308 + MIR SINE MIR 54 141 -67 2124 122 19 50 chr9 13746477 13746853 -128524591 + THE1B LTR MaLR 1 364 0 11184 101 19 0 chr9 13746853 13748403 -128523041 + THE1B-int LTR MaLR 1 1580 0 2044 114 62 31 chr9 13748404 13748756 -128522688 + THE1B LTR MaLR 2 364 0 482 272 99 47 chr9 13748785 13748818 -128522626 + MIR SINE MIR 33 63 -199 1511 175 50 68 chr9 13748818 13749200 -128522244 + THE1C LTR MaLR 1 375 0 482 272 99 47 chr9 13749200 13749379 -128522065 + MIR SINE MIR 63 256 -6 181 196 59 59 chr9 13749439 13749490 -128521954 + MIR SINE MIR 207 257 -5 9483 25 0 0 chr9 13749562 13751460 -128519984 - L1PA2 LINE L1 -1 6154 4257 27 36 0 36 chr9 13752143 13752161 -128519283 + AT_rich Low_complexity Low_complexity 1 18 -36 2237 75 4 0 chr9 13752161 13752487 -128518957 + AluY SINE Alu 2 328 0 27 36 0 36 chr9 13752487 13752523 -128518921 + AT_rich Low_complexity Low_complexity 18 54 0 228 306 41 16 chr9 13753131 13753252 -128518192 + L1ME LINE L1 5518 5641 -480 203 217 0 29 chr9 13755151 13755220 -128516224 + (TA)n Simple_repeat Simple_repeat 2 68 0 8223 186 21 12 chr9 13755352 13757291 -128514153 + L1MC1 LINE L1 6 2053 -4373 760 242 27 31 chr9 13757309 13757602 -128513842 + L1M4 LINE L1 4310 4601 -1545 297 250 110 0 chr9 13757597 13757733 -128513711 + L1M4 LINE L1 3794 3944 -2202 * 761 168 22 119 chr9 13757730 13757956 -128513488 + L1MA6 LINE L1 6093 6296 -4 1094 245 112 40 chr9 13758041 13758331 -128513113 + L1M4 LINE L1 4699 5038 -1108 2173 104 0 0 chr9 13758331 13758619 -128512825 + AluSg SINE Alu 13 300 -10 1094 245 112 40 chr9 13758619 13758802 -128512642 + L1M4 LINE L1 5038 5206 -940 * 3622 231 54 3 chr9 13758799 13760137 -128511307 + L1MC1 LINE L1 2100 3507 -2919 2768 143 47 0 chr9 13760168 13760679 -128510765 + L1MA2 LINE L1 5769 6303 -1 262 236 63 24 chr9 13760724 13760851 -128510593 + L1ME4a LINE L1 5944 6075 -46 5619 189 22 38 chr9 13760854 13762531 -128508913 + L1MC1 LINE L1 4971 6607 -6 187 345 46 11 chr9 13762544 13762631 -128508813 - MIR SINE MIR -83 125 36 302 86 29 29 chr9 13763367 13763437 -128508007 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 358 291 48 62 chr9 13763887 13764097 -128507347 - MIR SINE MIR -8 254 48 2120 141 34 8 chr9 13764370 13764725 -128506719 + THE1B LTR MaLR 1 364 0 180 335 39 95 chr9 13765446 13765625 -128505819 - L2 LINE L2 -207 3065 2897 231 225 28 0 chr9 13765865 13765936 -128505508 + (CA)n Simple_repeat Simple_repeat 2 74 0 187 366 123 25 chr9 13766233 13766517 -128504927 - L2 LINE L2 -670 2644 2333 32 57 0 0 chr9 13766539 13766592 -128504852 + AT_rich Low_complexity Low_complexity 1 53 0 321 89 0 0 chr9 13767090 13767135 -128504309 + (T)n Simple_repeat Simple_repeat 1 45 0 207 0 0 0 chr9 13767368 13767391 -128504053 + (T)n Simple_repeat Simple_repeat 1 23 0 240 86 0 0 chr9 13768178 13768213 -128503231 + (TG)n Simple_repeat Simple_repeat 2 36 0 1997 244 99 38 chr9 13769216 13769975 -128501469 - L1ME1 LINE L1 -5 6161 5357 489 301 100 26 chr9 13770065 13770566 -128500878 + L1M4 LINE L1 3044 3581 -2565 1443 228 43 73 chr9 13770571 13771037 -128500407 + L1ME1 LINE L1 5672 6123 -43 236 261 15 0 chr9 13771245 13771310 -128500134 + L1MEd LINE L1 973 1038 -5081 413 307 42 32 chr9 13771354 13771612 -128499832 + L1MEd LINE L1 1098 1403 -4786 327 292 75 32 chr9 13771964 13772310 -128499134 + L1MEd LINE L1 2114 2474 -3655 26 74 0 0 chr9 13772634 13772688 -128498756 + AT_rich Low_complexity Low_complexity 1 54 0 219 250 0 0 chr9 13773039 13773087 -128498357 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 262 253 36 0 chr9 13773088 13773171 -128498273 + L1MC4 LINE L1 6614 6699 -1343 1089 139 18 72 chr9 13773755 13773978 -128497466 - L1PA16 LINE L1 0 6166 5956 202 182 0 0 chr9 13774348 13774381 -128497063 + (TGG)n Simple_repeat Simple_repeat 3 35 0 2045 132 0 13 chr9 13775465 13775768 -128495676 - AluSx SINE Alu -13 299 1 25 0 0 0 chr9 13776294 13776319 -128495125 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr9 13777793 13777835 -128493609 + AT_rich Low_complexity Low_complexity 1 42 0 1308 114 36 0 chr9 13778020 13778213 -128493231 + MSTA LTR MaLR 1 200 -228 18287 81 8 3 chr9 13778213 13781651 -128489793 + L1PA7 LINE L1 2700 6154 0 1218 145 97 0 chr9 13781666 13781894 -128489550 + MSTA LTR MaLR 179 428 0 2555 180 49 64 chr9 13784371 13785029 -128486415 + L1MA4 LINE L1 5632 6289 -11 642 259 131 34 chr9 13785366 13785602 -128485842 - MIR SINE MIR 0 262 4 1739 157 18 0 chr9 13787416 13787738 -128483706 - AluSg SINE Alu 0 327 1 1825 34 13 8 chr9 13788330 13788568 -128482876 + L1PA4 LINE L1 5917 6155 0 236 384 46 26 chr9 13788588 13788739 -128482705 + L2 LINE L2 2943 3096 -217 311 314 107 0 chr9 13789782 13789903 -128481541 + L2 LINE L2 3176 3309 -4 183 80 0 0 chr9 13791113 13791138 -128480306 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 242 247 0 22 chr9 13793321 13793410 -128478034 - L1MC4 LINE L1 -1339 6703 6617 819 301 67 33 chr9 13793566 13793985 -128477459 + L2 LINE L2 2877 3309 -4 365 267 70 76 chr9 13794855 13795027 -128476417 + MIR SINE MIR 73 243 -19 2064 238 11 6 chr9 13795763 13796306 -128475138 + L1M4 LINE L1 4734 5279 -867 9785 127 36 5 chr9 13796308 13797864 -128473580 + Tigger1 DNA MER2_type 814 2418 0 912 240 164 21 chr9 13799364 13799835 -128471609 - L1MDb LINE L1 -1224 5182 4645 933 302 63 4 chr9 13799962 13800340 -128471104 - L1MDb LINE L1 -1903 4503 4094 30 83 0 0 chr9 13800341 13800413 -128471031 + AT_rich Low_complexity Low_complexity 1 72 0 568 273 83 14 chr9 13800420 13800636 -128470808 - L1MDb LINE L1 -2305 4101 3871 1003 190 0 16 chr9 13800637 13800821 -128470623 - AluJb SINE Alu 0 312 132 213 225 0 0 chr9 13800821 13800861 -128470583 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 739 154 0 0 chr9 13800890 13801007 -128470437 - AluJb SINE Alu -193 119 3 1647 260 48 66 chr9 13801014 13801802 -128469642 - L1MDb LINE L1 -2531 3875 3105 1606 204 119 28 chr9 13801802 13802263 -128469181 + MLT1D LTR MaLR 1 503 -2 1647 260 48 66 chr9 13802263 13802400 -128469044 - L1MDb LINE L1 -3301 3105 2967 583 267 66 14 chr9 13802471 13802838 -128468606 - L1MDb LINE L1 -4815 1591 1202 297 135 0 0 chr9 13803561 13803613 -128467831 + (TG)n Simple_repeat Simple_repeat 1 52 0 522 158 16 24 chr9 13803614 13803741 -128467703 + GA-rich Low_complexity Low_complexity 1 126 0 286 327 61 67 chr9 13804575 13804872 -128466572 + LTR16C LTR ERVL 194 488 -3 840 157 0 8 chr9 13805862 13805996 -128465448 + AluSq/x SINE Alu 2 134 -179 1609 162 7 74 chr9 13806011 13806320 -128465124 + AluSx SINE Alu 3 290 -22 2343 138 42 45 chr9 13806400 13806580 -128464864 - MSTB LTR MaLR 0 426 247 2146 132 73 9 chr9 13806580 13806922 -128464522 - THE1B LTR MaLR 0 364 1 11633 94 1 7 chr9 13806922 13808511 -128462933 - THE1B-int LTR MaLR 0 1580 1 1959 163 80 0 chr9 13808511 13808848 -128462596 - THE1B LTR MaLR 0 364 1 2343 138 42 45 chr9 13808848 13809092 -128462352 - MSTB LTR MaLR -176 250 1 587 304 49 66 chr9 13809273 13809516 -128461928 + MIR SINE MIR 5 243 -19 26 88 0 0 chr9 13809654 13809722 -128461722 + AT_rich Low_complexity Low_complexity 1 68 0 29 47 0 0 chr9 13810859 13810902 -128460542 + AT_rich Low_complexity Low_complexity 1 43 0 2069 118 0 19 chr9 13811254 13811567 -128459877 + AluSg SINE Alu 1 307 -3 233 232 0 0 chr9 13812242 13812298 -128459146 + T-rich Low_complexity Low_complexity 1 56 0 1708 233 15 25 chr9 13813237 13813640 -128457804 - MER47B DNA MER2_type 0 418 20 433 320 45 6 chr9 13814085 13814292 -128457152 + MIR SINE MIR 15 228 -34 384 314 133 18 chr9 13815053 13815279 -128456165 - MLT1J LTR MaLR -154 357 106 6093 74 1 4 chr9 13815430 13816229 -128455215 - L1PA6 LINE L1 0 6154 5358 225 0 0 0 chr9 13817302 13817327 -128454117 + (CA)n Simple_repeat Simple_repeat 1 25 0 315 244 0 24 chr9 13819551 13819633 -128451811 - MLT1H LTR MaLR -364 185 106 2295 99 3 6 chr9 13819677 13819989 -128451455 - AluSx SINE Alu -1 311 1 1134 256 76 51 chr9 13821426 13821914 -128449530 + LTR53 LTR ERVL 20 519 0 29 28 0 0 chr9 13823947 13823983 -128447461 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 13824223 13824244 -128447200 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 13824362 13824411 -128447033 + AT_rich Low_complexity Low_complexity 1 49 0 238 186 57 29 chr9 13824411 13824481 -128446963 + L1ME LINE L1 5337 5408 -713 326 269 22 15 chr9 13824535 13824669 -128446775 + GA-rich Low_complexity Low_complexity 2 136 0 230 303 127 0 chr9 13824803 13825031 -128446413 + L1ME LINE L1 5636 5892 -229 1476 209 39 33 chr9 13825118 13825481 -128445963 - MLT1A1 LTR MaLR 0 365 1 282 56 0 0 chr9 13825929 13825965 -128445479 + (TA)n Simple_repeat Simple_repeat 1 36 0 2109 89 17 10 chr9 13825966 13826259 -128445185 - AluSx SINE Alu -17 295 1 22 0 0 0 chr9 13826407 13826429 -128445015 + AT_rich Low_complexity Low_complexity 1 22 0 758 287 101 49 chr9 13827172 13827500 -128443944 - MLT1J LTR MaLR -57 454 110 1491 223 108 32 chr9 13828064 13828562 -128442882 - LTR55 LTR ERV -7 541 6 4689 144 30 25 chr9 13828597 13829444 -128442000 - MER49 LTR ERV1 -24 899 49 262 92 92 174 chr9 13829433 13829542 -128441902 - MER49 LTR ERV1 -823 100 1 * 372 163 0 0 chr9 13829551 13829637 -128441807 + T-rich Low_complexity Low_complexity 1 86 0 10196 14 0 0 chr9 13829637 13831600 -128439844 - L1HS LINE L1 0 6155 4193 6465 24 0 0 chr9 13831598 13832356 -128439088 + L1HS LINE L1 3439 4196 -1950 * 21 0 0 0 chr9 13833259 13833280 -128438164 + AT_rich Low_complexity Low_complexity 1 21 0 271 311 48 0 chr9 13834033 13834136 -128437308 + L2 LINE L2 3148 3255 -17 480 297 150 38 chr9 13837308 13837601 -128433843 + MLT1J2 LTR MaLR 5 330 -120 475 314 69 25 chr9 13839600 13839804 -128431640 + L2 LINE L2 2424 2636 -678 1364 225 28 3 chr9 13839806 13840091 -128431353 - ERVL-B1 LTR ERVL -5244 520 229 487 254 29 14 chr9 13840131 13840269 -128431175 - ERVL-B1 LTR ERVL -5623 141 2 2146 208 83 29 chr9 13840274 13840756 -128430688 - MLT2B1 LTR ERVL -8 512 5 845 312 112 31 chr9 13840764 13841219 -128430225 + L2 LINE L2 2805 3296 -17 378 42 0 0 chr9 13841221 13841269 -128430175 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 2015 106 11 3 chr9 13841980 13842263 -128429181 - AluSq SINE Alu -15 298 14 287 278 178 30 chr9 13842434 13842603 -128428841 - MIR SINE MIR -58 204 11 186 143 0 0 chr9 13843283 13843318 -128428126 + (CCA)n Simple_repeat Simple_repeat 2 36 0 2013 160 27 11 chr9 13843672 13844041 -128427403 - THE1C LTR MaLR 0 375 1 437 130 0 0 chr9 13844366 13844435 -128427009 - L1PA13 LINE L1 -3 6160 6092 25 31 0 0 chr9 13845042 13845074 -128426370 + AT_rich Low_complexity Low_complexity 1 32 0 180 365 0 0 chr9 13845752 13845815 -128425629 - L2 LINE L2 0 3313 3251 245 393 21 38 chr9 13845944 13846130 -128425314 - L2 LINE L2 -246 3026 2844 23 0 0 0 chr9 13846313 13846336 -128425108 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr9 13846384 13846425 -128425019 + (CA)n Simple_repeat Simple_repeat 2 42 0 456 335 71 22 chr9 13846956 13847180 -128424264 - MIR SINE MIR -15 247 13 268 241 121 91 chr9 13848681 13848913 -128422531 + L1MC4 LINE L1 6755 6993 -1049 186 174 0 0 chr9 13849124 13849170 -128422274 + (TA)n Simple_repeat Simple_repeat 2 47 0 2652 140 33 11 chr9 13849311 13849768 -128421676 - MLT1C LTR MaLR 0 467 1 220 349 93 35 chr9 13851432 13851604 -128419840 - MER5A DNA MER1_type -7 182 1 4878 200 43 17 chr9 13851762 13853689 -128417755 - L1MA10 LINE L1 -4 6330 4344 26 0 0 0 chr9 13856377 13856403 -128415041 + AT_rich Low_complexity Low_complexity 1 26 0 236 378 28 0 chr9 13858333 13858476 -128412968 + MIR SINE MIR 102 248 -14 207 211 19 19 chr9 13859637 13859689 -128411755 + CT-rich Low_complexity Low_complexity 2 53 0 727 217 12 24 chr9 13860176 13860342 -128411102 - FRAM SINE Alu -2 164 1 387 273 31 70 chr9 13860376 13860452 -128410992 - MLT1K LTR MaLR 0 588 511 2324 55 0 3 chr9 13860452 13860744 -128410700 + AluY SINE Alu 1 291 -20 531 0 0 0 chr9 13860744 13860803 -128410641 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 387 273 31 70 chr9 13860803 13860952 -128410492 - MLT1K LTR MaLR -75 513 371 1748 187 0 0 chr9 13861063 13861357 -128410087 - AluJo SINE Alu -16 296 3 242 28 0 28 chr9 13861894 13861930 -128409514 + (TTG)n Simple_repeat Simple_repeat 2 36 0 473 270 38 13 chr9 13861988 13862147 -128409297 - MER104 DNA Tc2 -9 171 9 478 327 57 16 chr9 13862178 13862426 -128409018 + MIR SINE MIR 5 262 0 788 236 97 0 chr9 13863095 13863290 -128408154 + MER20 DNA MER1_type 1 214 -5 881 148 112 133 chr9 13864336 13864674 -128406770 - MER33 DNA MER1_type 0 324 1 393 329 51 7 chr9 13865116 13865253 -128406191 - MIR SINE MIR -114 148 6 507 107 0 0 chr9 13867742 13867817 -128403627 + (TA)n Simple_repeat Simple_repeat 1 75 0 2017 218 54 30 chr9 13867832 13868273 -128403171 - MLT2B1 LTR ERVL -68 452 1 1027 234 12 81 chr9 13868412 13868758 -128402686 - MLT1H LTR MaLR -169 380 59 192 347 40 0 chr9 13868809 13868884 -128402560 + MIR SINE MIR 51 128 -80 706 191 48 64 chr9 13869184 13869372 -128402072 - MER5A DNA MER1_type -1 188 4 580 318 87 12 chr9 13869425 13869677 -128401767 - MLT1I LTR MaLR -134 275 5 377 390 110 24 chr9 13869763 13870299 -128401145 - L2 LINE L2 -880 2434 1853 195 42 0 0 chr9 13870631 13870655 -128400789 + (CA)n Simple_repeat Simple_repeat 2 25 0 279 203 22 138 chr9 13870762 13870900 -128400544 - MLT1H LTR MaLR -3 546 425 769 265 45 30 chr9 13871161 13871361 -128400083 - MER63A DNA MER1_type -2 208 6 239 196 54 120 chr9 13871454 13871546 -128399898 - L2 LINE L2 0 3272 3187 273 128 0 0 chr9 13871596 13871643 -128399801 + (CA)n Simple_repeat Simple_repeat 2 48 0 202 388 29 29 chr9 13873415 13873585 -128397859 + L3 LINE CR1 1407 1576 -1 320 365 72 38 chr9 13873781 13874044 -128397400 + L3 LINE CR1 557 828 -749 254 226 0 16 chr9 13874047 13874109 -128397335 + L1ME2 LINE L1 6004 6064 -100 597 344 82 22 chr9 13874489 13874855 -128396589 + L3 LINE CR1 837 1224 -353 44 20 0 0 chr9 13874969 13875020 -128396424 + AT_rich Low_complexity Low_complexity 1 51 0 186 167 0 0 chr9 13875078 13875114 -128396330 + (CA)n Simple_repeat Simple_repeat 1 36 0 953 256 73 38 chr9 13875960 13876409 -128395035 + Charlie4a DNA MER1_type 3 467 -41 218 57 57 0 chr9 13876512 13876547 -128394897 + T-rich Low_complexity Low_complexity 4 40 0 184 225 141 14 chr9 13876784 13876855 -128394589 + L2 LINE L2 137 216 -3098 459 252 9 9 chr9 13877540 13877651 -128393793 + MIR SINE MIR 31 141 -121 418 344 7 26 chr9 13877845 13877999 -128393445 - MIR3 SINE MIR -19 189 39 190 358 63 0 chr9 13878531 13878626 -128392818 + L2 LINE L2 3193 3293 -20 250 340 119 16 chr9 13878769 13878963 -128392481 + L2 LINE L2 2812 3025 -247 251 326 44 44 chr9 13879396 13879531 -128391913 - L2 LINE L2 -1 3271 3137 864 305 0 5 chr9 13879623 13879846 -128391598 + MIR SINE MIR 8 229 -33 22 70 0 0 chr9 13879933 13879976 -128391468 + AT_rich Low_complexity Low_complexity 1 43 0 1087 86 0 7 chr9 13879979 13880130 -128391314 - L1PA10 LINE L1 -11 6157 6008 1190 278 54 84 chr9 13880306 13880878 -128390566 - MLT1H1 LTR MaLR 0 555 1 354 352 98 34 chr9 13880976 13881240 -128390204 + L2 LINE L2 2950 3230 -42 21 0 0 0 chr9 13881401 13881422 -128390022 + AT_rich Low_complexity Low_complexity 1 21 0 492 278 181 0 chr9 13881881 13882086 -128389358 - MIR SINE MIR -10 252 11 212 235 12 74 chr9 13882211 13882292 -128389152 - L2 LINE L2 -905 2409 2334 381 229 57 8 chr9 13882721 13882843 -128388601 + LTR16A1 LTR ERVL 330 457 0 206 398 27 32 chr9 13883754 13883975 -128387469 + L2 LINE L2 2684 2903 -411 182 327 159 19 chr9 13885931 13886038 -128385406 - L2 LINE L2 0 3272 3151 738 241 93 0 chr9 13886176 13886392 -128385052 + MER69 DNA AcHobo 2291 2526 0 2327 81 0 0 chr9 13886710 13887006 -128384438 + AluY SINE Alu 1 296 -15 654 322 48 9 chr9 13887712 13887942 -128383502 + MIR SINE MIR 10 248 -14 217 128 43 0 chr9 13888667 13888714 -128382730 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 249 187 93 40 chr9 13890159 13890234 -128381210 - MIR SINE MIR 0 262 184 28 0 0 0 chr9 13890320 13890348 -128381096 + AT_rich Low_complexity Low_complexity 1 28 0 213 238 16 66 chr9 13890573 13890695 -128380749 + A-rich Low_complexity Low_complexity 4 119 0 23 78 0 0 chr9 13890787 13890838 -128380606 + AT_rich Low_complexity Low_complexity 1 51 0 318 319 55 55 chr9 13891217 13891578 -128379866 + L1M4 LINE L1 2690 3050 -3096 2780 239 22 8 chr9 13891639 13892282 -128379162 + MER82 DNA MER2_type 2 653 0 1527 222 29 18 chr9 13892528 13892871 -128378573 + MLT1A1 LTR MaLR 7 353 -12 22 0 0 0 chr9 13893039 13893061 -128378383 + AT_rich Low_complexity Low_complexity 1 22 0 309 143 16 16 chr9 13895537 13895600 -128375844 - MLT1H LTR MaLR -446 103 41 2007 124 0 0 chr9 13896783 13897056 -128374388 + AluSx SINE Alu 1 273 -39 207 0 0 0 chr9 13898347 13898370 -128373074 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 237 235 0 86 chr9 13898399 13898480 -128372964 + MLT1L LTR MaLR 137 221 -367 301 213 0 0 chr9 13898531 13898578 -128372866 + MER5A DNA MER1_type 50 96 -93 2338 152 8 0 chr9 13898578 13898946 -128372498 + MLT2D LTR ERVL 1 371 -43 513 162 10 50 chr9 13899026 13899125 -128372319 + MER5A DNA MER1_type 94 188 -1 1332 277 137 31 chr9 13899202 13899786 -128371658 + MLT2F LTR ERVL 18 663 0 1568 155 0 12 chr9 13900457 13900715 -128370729 - AluJb SINE Alu -57 255 1 189 214 31 10 chr9 13901074 13901172 -128370272 + (CTATA)n Simple_repeat Simple_repeat 4 103 0 306 0 0 0 chr9 13901666 13901700 -128369744 + (CA)n Simple_repeat Simple_repeat 1 34 0 1731 165 0 32 chr9 13903066 13903375 -128368069 + AluJb SINE Alu 1 299 -13 354 110 0 122 chr9 13904100 13904182 -128367262 + L1MA10 LINE L1 6253 6324 -10 264 185 0 0 chr9 13904566 13904620 -128366824 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 370 0 0 chr9 13904721 13904794 -128366650 - L2 LINE L2 -234 3038 2966 288 0 0 0 chr9 13905643 13905675 -128365769 + (TG)n Simple_repeat Simple_repeat 2 33 0 2016 89 48 7 chr9 13905680 13905951 -128365493 - AluSx SINE Alu -15 297 16 236 366 0 0 chr9 13906221 13906303 -128365141 - L2 LINE L2 0 3313 3232 321 256 47 116 chr9 13907181 13907439 -128364005 - L2 LINE L2 0 3313 3074 202 250 39 0 chr9 13907595 13907647 -128363797 + L2 LINE L2 3219 3272 0 297 0 0 0 chr9 13907996 13908029 -128363415 + (TG)n Simple_repeat Simple_repeat 2 34 0 192 289 100 56 chr9 13908329 13908419 -128363025 + MIR3 SINE MIR 6 99 -109 1155 305 72 54 chr9 13908517 13908908 -128362536 + L2 LINE L2 2346 2728 -585 1744 180 3 7 chr9 13908908 13909208 -128362236 + AluJo SINE Alu 10 308 -4 381 22 0 0 chr9 13909209 13909255 -128362189 + (CA)n Simple_repeat Simple_repeat 1 46 0 1155 305 72 54 chr9 13909255 13909803 -128361641 + L2 LINE L2 2727 3313 0 277 417 22 7 chr9 13909915 13910054 -128361390 + L2 LINE L2 3127 3267 -5 315 85 0 0 chr9 13912366 13912413 -128359031 + (TC)n Simple_repeat Simple_repeat 1 47 0 24 32 0 0 chr9 13913284 13913315 -128358129 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr9 13914817 13914842 -128356602 + (TG)n Simple_repeat Simple_repeat 2 26 0 363 60 0 0 chr9 13915234 13915284 -128356160 + (TG)n Simple_repeat Simple_repeat 1 50 0 26 30 0 0 chr9 13915749 13915782 -128355662 + AT_rich Low_complexity Low_complexity 1 33 0 1041 252 136 19 chr9 13915837 13916433 -128355011 - Charlie7 DNA MER1_type -316 2296 1631 431 281 79 55 chr9 13916523 13916815 -128354629 - Charlie7 DNA MER1_type -2277 335 37 368 20 0 20 chr9 13917253 13917303 -128354141 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr9 13917591 13917620 -128353824 + AT_rich Low_complexity Low_complexity 1 29 0 2119 99 0 0 chr9 13919391 13919664 -128351780 + AluSq SINE Alu 41 313 0 578 264 99 20 chr9 13919728 13919929 -128351515 - LTR33 LTR ERVL 0 521 305 377 220 136 51 chr9 13920036 13920064 -128351380 - LTR33 LTR ERVL -380 141 117 1909 184 19 21 chr9 13920064 13920440 -128351004 - THE1C LTR MaLR 0 375 1 377 220 136 51 chr9 13920440 13920529 -128350915 - LTR33 LTR ERVL -404 117 14 208 65 87 0 chr9 13920625 13920671 -128350773 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chr9 13920747 13920770 -128350674 + AT_rich Low_complexity Low_complexity 1 23 0 264 353 10 0 chr9 13921377 13921479 -128349965 + MIR3 SINE MIR 97 199 -9 333 363 52 44 chr9 13922891 13923139 -128348305 + L1MEd LINE L1 964 1213 -4906 266 313 97 23 chr9 13923256 13923473 -128347971 + HAL1 LINE L1 1429 1661 -846 1332 161 158 61 chr9 13924400 13924761 -128346683 + MSTD LTR MaLR 1 396 0 27 0 0 0 chr9 13925395 13925422 -128346022 + AT_rich Low_complexity Low_complexity 1 27 0 2807 257 70 56 chr9 13925424 13926916 -128344528 - L1MC4 LINE L1 0 8042 6531 403 321 87 5 chr9 13926986 13927170 -128344274 + MIR SINE MIR 59 257 -5 280 288 0 0 chr9 13928128 13928208 -128343236 + T-rich Low_complexity Low_complexity 1 80 0 187 321 0 0 chr9 13928220 13928273 -128343171 - L2 LINE L2 -4 3309 3257 567 327 122 41 chr9 13928372 13929002 -128342442 - L2 LINE L2 -110 3203 2439 1898 101 7 64 chr9 13929700 13929998 -128341446 - MER52A-int LTR ERV1 -5113 1978 1698 3080 160 76 0 chr9 13930115 13930550 -128340894 - MER52A-int LTR ERV1 -6520 571 88 195 42 0 0 chr9 13930550 13930574 -128340870 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3080 160 76 0 chr9 13930574 13930662 -128340782 - MER52A-int LTR ERV1 -7003 88 8 1610 196 24 0 chr9 13930669 13930960 -128340484 - MER52A LTR ERV1 0 1755 1458 4415 204 79 20 chr9 13930981 13931967 -128339477 - MER52A LTR ERV1 -711 1044 1 360 188 62 0 chr9 13931993 13932057 -128339387 - L1M1 LINE L1 -5856 1709 1642 * 14015 172 33 15 chr9 13932010 13937978 -128333466 + L1MA2 LINE L1 1640 7723 0 2078 110 10 10 chr9 13938192 13938358 -128333086 - AluSx SINE Alu -11 301 133 348 24 0 0 chr9 13938358 13938399 -128333045 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2078 110 10 10 chr9 13938399 13938531 -128332913 - AluSx SINE Alu -178 134 3 642 206 18 30 chr9 13938561 13938726 -128332718 + L1ME3 LINE L1 5999 6161 -1 717 238 20 15 chr9 13938990 13939203 -128332241 + Ricksha DNA DNA 2 291 -963 * 8265 150 43 17 chr9 13939196 13939749 -128331695 + Ricksha DNA DNA 1690 2227 -1019 4109 93 0 4 chr9 13939749 13940305 -128331139 - MER41A LTR ERV1 0 554 1 8265 150 43 17 chr9 13940305 13941260 -128330184 + Ricksha DNA DNA 2227 3237 -9 23 78 0 0 chr9 13941614 13941665 -128329779 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr9 13943199 13943223 -128328221 + AT_rich Low_complexity Low_complexity 1 24 0 381 342 8 0 chr9 13944780 13944897 -128326547 - L2 LINE L2 -1 3271 3154 276 315 74 9 chr9 13945238 13945346 -128326098 - L2 LINE L2 -4 3268 3154 462 297 78 45 chr9 13946080 13946607 -128324837 - L1M4 LINE L1 -1984 4398 3854 1717 187 20 0 chr9 13947404 13947751 -128323693 - L1MA4A LINE L1 -7 6296 5943 276 285 65 41 chr9 13948164 13948287 -128323157 + MIR3 SINE MIR 74 199 -9 435 227 97 32 chr9 13948391 13948545 -128322899 + MIR SINE MIR 97 260 -2 514 360 102 21 chr9 13948854 13949470 -128321974 + L3 LINE CR1 502 1167 -410 342 0 0 0 chr9 13949488 13949526 -128321918 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr9 13950048 13950078 -128321366 + AT_rich Low_complexity Low_complexity 1 30 0 520 284 137 55 chr9 13950078 13950307 -128321137 - L2 LINE L2 -31 3282 3073 1943 122 0 14 chr9 13950307 13950685 -128320759 + AluSx SINE Alu 1 374 0 520 284 137 55 chr9 13950685 13950995 -128320449 - L2 LINE L2 -240 3073 2689 1396 205 81 9 chr9 13951973 13952305 -128319139 + MER65C LTR ERV1 106 461 0 345 125 0 0 chr9 13952677 13952733 -128318711 + (TG)n Simple_repeat Simple_repeat 1 56 0 320 227 76 68 chr9 13952741 13952873 -128318571 + L2 LINE L2 3169 3301 -12 182 323 81 10 chr9 13952994 13953093 -128318351 + L2 LINE L2 3158 3263 -9 546 186 141 0 chr9 13953942 13954098 -128317346 + MER53 DNA DNA 12 189 0 2558 182 30 9 chr9 13954209 13954221 -128317223 - L1MA4A LINE L1 -407 5776 5766 1707 174 3 9 chr9 13954221 13954555 -128316889 - L1MB3 LINE L1 -4 6179 5848 2558 182 30 9 chr9 13954555 13955101 -128316343 - L1MA4A LINE L1 -417 5766 5208 1926 221 33 14 chr9 13955085 13955655 -128315789 - L1MA4A LINE L1 -2471 3675 3095 * 277 312 9 9 chr9 13955672 13955781 -128315663 - L1M4 LINE L1 -3631 2751 2643 533 231 62 5 chr9 13955790 13955893 -128315551 - L1M4 LINE L1 -3639 2743 2647 485 58 14 0 chr9 13955893 13955962 -128315482 + (TA)n Simple_repeat Simple_repeat 1 70 0 533 231 62 5 chr9 13955962 13956053 -128315391 - L1M4 LINE L1 -3735 2647 2538 * 6883 185 79 10 chr9 13956047 13956835 -128314609 - L1M4 LINE L1 -4850 1534 802 1602 192 3 7 chr9 13956835 13956857 -128314587 - AluJb SINE Alu -6 306 285 532 24 73 0 chr9 13956857 13956939 -128314505 + (GTTTG)n Simple_repeat Simple_repeat 2 89 0 1602 192 3 7 chr9 13956939 13957223 -128314221 - AluJb SINE Alu -27 285 1 6883 185 79 10 chr9 13957223 13957847 -128313597 - L1M4 LINE L1 -5582 802 24 257 329 60 27 chr9 13958178 13958327 -128313117 - MLT1I LTR MaLR -255 154 1 295 350 52 36 chr9 13958377 13958571 -128312873 - L3 LINE CR1 -47 1530 1334 1945 156 0 0 chr9 13959379 13959662 -128311782 + AluSx SINE Alu 3 285 -27 217 355 47 9 chr9 13959969 13960076 -128311368 + MIR3 SINE MIR 12 122 -86 234 146 24 0 chr9 13960080 13960121 -128311323 + MIR SINE MIR 148 189 -73 21 36 0 0 chr9 13960388 13960416 -128311028 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr9 13961459 13961481 -128309963 + (TC)n Simple_repeat Simple_repeat 1 22 0 369 0 0 0 chr9 13961485 13961526 -128309918 + (TG)n Simple_repeat Simple_repeat 2 42 0 228 86 0 0 chr9 13962248 13962283 -128309161 + (TC)n Simple_repeat Simple_repeat 2 36 0 520 111 12 0 chr9 13963304 13963385 -128308059 + AluJ/FRAM SINE Alu 216 297 -15 28 0 0 0 chr9 13963424 13963452 -128307992 + AT_rich Low_complexity Low_complexity 1 28 0 6862 138 27 6 chr9 13963664 13965813 -128305631 - L1MA1 LINE L1 -4 6298 4104 488 296 0 0 chr9 13967142 13967257 -128304187 - MIR3 SINE MIR -5 203 89 249 271 0 0 chr9 13967305 13967353 -128304091 - L2 LINE L2 -15 3257 3210 433 307 80 18 chr9 13967669 13967832 -128303612 - MIR SINE MIR -6 256 84 510 217 0 0 chr9 13969123 13969229 -128302215 + L1MA9 LINE L1 6171 6276 -36 215 348 11 11 chr9 13972812 13972904 -128298540 - MIR SINE MIR -3 259 168 272 343 0 10 chr9 13973705 13973807 -128297637 - Charlie7 DNA MER1_type -2511 101 1 207 262 16 16 chr9 13974080 13974141 -128297303 - L2 LINE L2 -11 3261 3201 352 328 9 0 chr9 13975688 13975804 -128295640 - MIR SINE MIR -121 141 25 318 106 0 0 chr9 13976590 13976637 -128294807 + (TG)n Simple_repeat Simple_repeat 2 48 0 1712 137 0 0 chr9 13978291 13978539 -128292905 + AluSx SINE Alu 21 268 -44 345 319 53 43 chr9 13980009 13980197 -128291247 - L2 LINE L2 -32 3281 3092 244 202 138 46 chr9 13980237 13980346 -128291098 - L2 LINE L2 -411 2903 2785 21 36 0 0 chr9 13980653 13980681 -128290763 + AT_rich Low_complexity Low_complexity 1 28 0 404 323 83 10 chr9 13981005 13981197 -128290247 - MIR SINE MIR -11 251 46 369 316 29 46 chr9 13981343 13981517 -128289927 + MIR SINE MIR 2 172 -90 22 56 0 0 chr9 13982935 13982971 -128288473 + AT_rich Low_complexity Low_complexity 1 36 0 235 329 37 0 chr9 13983325 13983407 -128288037 - L2 LINE L2 -2 3311 3227 338 354 14 51 chr9 13983421 13983636 -128287808 - L2 LINE L2 -236 3036 2830 31 58 0 0 chr9 13983913 13983965 -128287479 + AT_rich Low_complexity Low_complexity 1 52 0 3921 246 47 20 chr9 13983977 13985402 -128286042 + L1M4c LINE L1 2251 3720 -2662 343 309 111 51 chr9 13985784 13986173 -128285271 + L3 LINE CR1 708 1119 -458 1496 268 23 0 chr9 13986173 13986568 -128284876 - L1 LINE L1 -3553 2593 2190 536 164 8 67 chr9 13986550 13986580 -128284864 - L1 LINE L1 -2701 3445 3415 * 1751 153 60 44 chr9 13986580 13986946 -128284498 - THE1C LTR MaLR 0 375 4 536 164 8 67 chr9 13986946 13987049 -128284395 - L1 LINE L1 -2731 3415 3320 290 360 18 9 chr9 13987373 13987484 -128283960 - MIR3 SINE MIR -23 185 74 183 392 69 10 chr9 13988033 13988135 -128283309 + L2 LINE L2 3156 3263 -9 479 246 96 48 chr9 13988905 13989259 -128282185 + HAL1 LINE L1 2010 2380 -127 25 0 0 0 chr9 13989337 13989362 -128282082 + AT_rich Low_complexity Low_complexity 1 25 0 1053 210 48 65 chr9 13990279 13990631 -128280813 - L1MC4 LINE L1 -3 8039 7694 438 348 57 13 chr9 13990814 13991041 -128280403 + MIR SINE MIR 26 262 0 207 0 0 0 chr9 13993715 13993738 -128277706 + (A)n Simple_repeat Simple_repeat 1 23 0 1508 216 57 67 chr9 13994089 13994599 -128276845 - MLT1D LTR MaLR 0 505 1 580 354 66 8 chr9 13995055 13995419 -128276025 + L2 LINE L2 2098 2482 -832 26 64 0 0 chr9 13996650 13996697 -128274747 + AT_rich Low_complexity Low_complexity 1 47 0 257 218 106 13 chr9 13996958 13997052 -128274392 + AluY SINE Alu 132 201 -100 329 62 21 0 chr9 13997548 13997596 -128273848 + (TG)n Simple_repeat Simple_repeat 2 50 0 2329 39 42 0 chr9 13998013 13998298 -128273146 - AluY SINE Alu -14 297 1 191 214 125 0 chr9 13998343 13998399 -128273045 - MIR SINE MIR -101 161 99 5991 152 68 15 chr9 13998453 13999618 -128271826 + Tigger3b DNA MER2_type 2 1228 -3 721 149 0 0 chr9 13999791 13999905 -128271539 + FLAM_C SINE Alu 14 127 -16 332 238 267 0 chr9 14000867 14000972 -128270472 - MER102b DNA MER1_type -14 327 195 935 293 75 58 chr9 14000981 14001514 -128269930 - MER34 LTR ERV1 0 542 1 371 288 83 8 chr9 14001515 14001647 -128269797 - MER102b DNA MER1_type -164 177 36 2699 172 67 7 chr9 14001924 14002476 -128268968 + L1MA9 LINE L1 5728 6312 0 210 276 17 0 chr9 14002700 14002758 -128268686 - MIR SINE MIR 0 262 204 325 323 109 0 chr9 14002778 14002998 -128268446 - L1ME4a LINE L1 -165 5956 5713 227 338 82 36 chr9 14002998 14003279 -128268165 - MLT1L LTR MaLR -1 614 321 274 194 41 171 chr9 14003626 14003796 -128267648 - L1ME4a LINE L1 -443 5678 5531 24 32 0 0 chr9 14004019 14004050 -128267394 + AT_rich Low_complexity Low_complexity 1 31 0 2790 152 98 12 chr9 14004060 14004664 -128266780 + L1MC1 LINE L1 5197 5854 -479 855 229 5 21 chr9 14004685 14004877 -128266567 + 7SLRNA srpRNA srpRNA 111 299 -21 2556 178 13 4 chr9 14004880 14005358 -128266086 + L1MC1 LINE L1 5840 6321 -12 198 0 0 0 chr9 14005359 14005381 -128266063 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 444 82 0 0 chr9 14005380 14005441 -128266003 + (TG)n Simple_repeat Simple_repeat 2 62 0 194 360 113 7 chr9 14005791 14005941 -128265503 + L2 LINE L2 2809 2974 -298 391 326 36 31 chr9 14005951 14006147 -128265297 + MIR SINE MIR 51 247 -15 204 382 56 7 chr9 14006558 14006702 -128264742 + L2 LINE L2 3161 3311 -2 1464 219 132 39 chr9 14007073 14007535 -128263909 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr9 14008975 14008997 -128262447 + AT_rich Low_complexity Low_complexity 1 22 0 1798 171 13 3 chr9 14009508 14009817 -128261627 - AluJb SINE Alu 0 312 1 419 315 61 17 chr9 14011259 14011440 -128260004 + MER5A DNA MER1_type 1 189 0 212 286 188 53 chr9 14012212 14012345 -128259099 + MIR3 SINE MIR 9 159 -49 29 70 0 0 chr9 14012404 14012461 -128258983 + AT_rich Low_complexity Low_complexity 1 57 0 620 335 61 50 chr9 14012861 14013557 -128257887 - L2 LINE L2 -245 3068 2321 14224 120 12 4 chr9 14013998 14016986 -128254458 - L1PA8A LINE L1 0 6446 3448 1058 87 19 0 chr9 14016999 14017160 -128254284 + L1P LINE L1 3865 4028 -2118 235 152 0 0 chr9 14017159 14017205 -128254239 - L1PA8A LINE L1 -3014 3447 3402 * 1146 151 234 12 chr9 14017210 14017462 -128253982 - AluSg1 SINE Alu -1 308 1 10798 170 14 41 chr9 14017462 14020010 -128251434 - L1PA12 LINE L1 -3061 3400 14 742 243 92 34 chr9 14020173 14020442 -128251002 - L1ME2 LINE L1 0 6162 5874 580 271 65 9 chr9 14020453 14020667 -128250777 - L1ME2 LINE L1 -1034 5112 4887 247 326 53 8 chr9 14021027 14021159 -128250285 + L2 LINE L2 2837 2974 -298 771 331 83 11 chr9 14021821 14022087 -128249357 - MLT1I LTR MaLR -1 408 124 515 282 50 44 chr9 14022180 14022361 -128249083 + MIR SINE MIR 75 256 -6 543 244 96 89 chr9 14022551 14022822 -128248622 - MLT1H1 LTR MaLR -196 359 87 9114 249 41 25 chr9 14022940 14024483 -128246961 - L1M4 LINE L1 -758 5388 3871 763 127 0 0 chr9 14024483 14024601 -128246843 - FLAM_C SINE Alu -15 118 1 9114 249 41 25 chr9 14024601 14026109 -128245335 - L1M4 LINE L1 -2275 3871 2285 1623 219 0 0 chr9 14026109 14026411 -128245033 - AluJb SINE Alu -9 303 2 9114 249 41 25 chr9 14026411 14026434 -128245010 - L1M4 LINE L1 -3861 2285 2264 30 45 0 0 chr9 14027590 14027634 -128243810 + AT_rich Low_complexity Low_complexity 1 44 0 750 130 0 0 chr9 14028486 14028594 -128242850 + L1PA8 LINE L1 6052 6159 -13 2832 104 17 7 chr9 14029098 14029487 -128241957 + MLT2A2 LTR ERVL 1 396 -57 534 16 0 0 chr9 14029487 14029550 -128241894 + (TA)n Simple_repeat Simple_repeat 1 63 0 2832 104 17 7 chr9 14029550 14029572 -128241872 + MLT2A2 LTR ERVL 396 416 -37 460 242 57 13 chr9 14030697 14030854 -128240590 - MER103 DNA DNA -2 164 1 239 140 20 0 chr9 14031291 14031341 -128240103 + (CA)n Simple_repeat Simple_repeat 2 52 0 185 0 40 0 chr9 14031343 14031368 -128240076 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 217 197 30 0 chr9 14031443 14031509 -128239935 + (TA)n Simple_repeat Simple_repeat 2 69 0 219 274 3 15 chr9 14031626 14031694 -128239750 + MIR SINE MIR 88 140 -68 192 40 0 0 chr9 14032508 14032533 -128238911 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr9 14034020 14034042 -128237402 + AT_rich Low_complexity Low_complexity 1 22 0 186 359 51 26 chr9 14034261 14034378 -128237066 + L2 LINE L2 3148 3267 -5 2423 84 0 3 chr9 14035292 14035601 -128235843 - AluY SINE Alu -3 308 1 21 36 0 0 chr9 14035927 14035955 -128235489 + AT_rich Low_complexity Low_complexity 1 28 0 299 251 126 40 chr9 14036172 14036347 -128235097 + MIR SINE MIR 11 200 -62 292 282 23 30 chr9 14036465 14036596 -128234848 + GA-rich Low_complexity Low_complexity 3 132 0 189 0 0 0 chr9 14037424 14037445 -128233999 + (T)n Simple_repeat Simple_repeat 1 21 0 1613 187 14 10 chr9 14037458 14037752 -128233692 - 7SLRNA srpRNA srpRNA -13 307 13 243 61 0 0 chr9 14038876 14038909 -128232535 + (TC)n Simple_repeat Simple_repeat 2 34 0 494 197 27 158 chr9 14039806 14039883 -128231561 + Tigger3(Golem) DNA MER2_type 1 86 -2942 2145 95 21 0 chr9 14039883 14040168 -128231276 + AluSp SINE Alu 1 291 -22 494 197 27 158 chr9 14040168 14040273 -128231171 + Tigger3(Golem) DNA MER2_type 86 2585 -443 232 103 0 0 chr9 14040245 14040284 -128231160 + Tigger3(Golem) DNA MER2_type 2771 2809 -220 * 1321 174 55 0 chr9 14040448 14040683 -128230761 + Tigger3(Golem) DNA MER2_type 2790 3037 0 826 157 0 15 chr9 14040783 14040917 -128230527 - FLAM_C SINE Alu 0 133 2 184 367 89 6 chr9 14040940 14041120 -128230324 + MIR SINE MIR 55 249 -13 204 67 0 0 chr9 14042379 14042409 -128229035 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2225 91 0 0 chr9 14042413 14042687 -128228757 - AluSc SINE Alu -33 276 3 1291 214 162 15 chr9 14042817 14043224 -128228220 + MLT1C LTR MaLR 1 467 0 1616 205 44 48 chr9 14043398 14043832 -128227612 - MER63B DNA MER1_type -4 432 1 1085 191 0 43 chr9 14045559 14045790 -128225654 - AluJo SINE Alu -6 306 86 204 125 0 0 chr9 14046188 14046220 -128225224 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 201 213 0 0 chr9 14048557 14048604 -128222840 + (CGG)n Simple_repeat Simple_repeat 3 49 0 278 274 78 29 chr9 14049564 14049666 -128221778 + MIR3 SINE MIR 71 177 -31 510 67 53 0 chr9 14050624 14050699 -128220745 + MADE1 DNA Mariner 2 80 0 389 308 68 0 chr9 14051013 14051159 -128220285 + MIR SINE MIR 53 208 -54 188 275 0 0 chr9 14051448 14051488 -128219956 - L2 LINE L2 -16 3256 3217 1312 159 112 35 chr9 14051566 14051880 -128219564 - MER44D DNA MER2_type 0 609 2 319 278 154 84 chr9 14051892 14051972 -128219472 - MIR SINE MIR -14 248 175 2497 59 13 0 chr9 14051972 14052275 -128219169 - AluY SINE Alu -4 307 1 319 278 154 84 chr9 14052275 14052421 -128219023 - MIR SINE MIR -87 175 6 260 189 19 0 chr9 14053197 14053250 -128218194 - MIR SINE MIR -111 151 98 24 53 0 0 chr9 14053428 14053466 -128217978 + AT_rich Low_complexity Low_complexity 1 38 0 9251 155 28 7 chr9 14053601 14053664 -128217780 - L1MA3 LINE L1 -106 7618 7558 2309 78 3 0 chr9 14053664 14053976 -128217468 - AluSp SINE Alu 0 313 1 9251 155 28 7 chr9 14053976 14056541 -128214903 - L1MA3 LINE L1 -166 7558 4929 9676 176 189 19 chr9 14056557 14058667 -128212777 - L1MA3 LINE L1 -5091 2474 8 331 289 0 35 chr9 14058765 14058879 -128212565 - MIR SINE MIR -1 261 152 359 40 0 20 chr9 14059238 14059288 -128212156 + (TA)n Simple_repeat Simple_repeat 1 49 0 240 86 0 0 chr9 14060028 14060063 -128211381 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 261 357 10 0 chr9 14060278 14060376 -128211068 - L3 LINE CR1 -87 1490 1392 1866 152 31 0 chr9 14060536 14060915 -128210529 + AluSx SINE Alu 1 388 0 437 270 77 61 chr9 14061013 14061339 -128210105 + L1ME4a LINE L1 5496 5826 -295 333 214 71 64 chr9 14061388 14061528 -128209916 + L1ME4a LINE L1 5961 6101 -20 924 203 5 42 chr9 14061549 14061766 -128209678 + AluJo SINE Alu 65 273 -39 195 42 0 0 chr9 14061797 14061821 -128209623 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 14062811 14062834 -128208610 + AT_rich Low_complexity Low_complexity 1 23 0 461 187 32 24 chr9 14064216 14064339 -128207105 - L1MC4 LINE L1 0 8042 7919 183 80 0 0 chr9 14064349 14064374 -128207070 + (TC)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chr9 14064395 14064419 -128207025 + (CA)n Simple_repeat Simple_repeat 2 25 0 205 329 82 14 chr9 14067819 14067965 -128203479 + L2 LINE L2 2885 3040 -232 24 32 0 0 chr9 14068087 14068118 -128203326 + AT_rich Low_complexity Low_complexity 1 31 0 243 362 73 34 chr9 14070115 14070292 -128201152 + MIR3 SINE MIR 17 200 -8 2385 65 20 0 chr9 14070616 14070909 -128200535 + AluY SINE Alu 1 299 -12 984 199 39 31 chr9 14070932 14071188 -128200256 - L1MA9 LINE L1 -40 6272 6015 306 289 78 82 chr9 14071216 14071448 -128199996 - MIR SINE MIR -4 258 28 1152 129 12 0 chr9 14071728 14071898 -128199546 + MSTA LTR MaLR 257 428 0 215 136 68 0 chr9 14072449 14072493 -128198951 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2284 140 46 10 chr9 14073263 14073676 -128197768 + MSTA LTR MaLR 1 428 0 313 404 67 5 chr9 14074284 14074477 -128196967 - MIR3 SINE MIR -2 206 2 1995 143 7 0 chr9 14075364 14075658 -128195786 - AluSx SINE Alu -14 298 3 29 47 0 0 chr9 14075680 14075723 -128195721 + AT_rich Low_complexity Low_complexity 1 43 0 362 197 66 0 chr9 14075893 14075969 -128195475 + MER58A DNA MER1_type 18 98 -9 22 0 0 0 chr9 14076037 14076059 -128195385 + AT_rich Low_complexity Low_complexity 1 22 0 1129 212 28 107 chr9 14077135 14077631 -128193813 - LTR37B LTR ERV1 0 468 12 566 14 0 0 chr9 14077990 14078063 -128193381 + AluY SINE Alu 232 304 -5 1472 67 62 0 chr9 14078070 14078112 -128193332 + AluY SINE Alu 80 118 -193 216 0 0 0 chr9 14078112 14078136 -128193308 + (TA)n Simple_repeat Simple_repeat 2 25 0 1472 67 62 0 chr9 14078136 14078286 -128193158 + AluY SINE Alu 118 284 -27 255 79 0 0 chr9 14078286 14078324 -128193120 + (CTAA)n Simple_repeat Simple_repeat 3 40 0 219 299 77 34 chr9 14078450 14078567 -128192877 + MIR SINE MIR 21 142 -120 7497 177 109 71 chr9 14078573 14079345 -128192099 - L1MCa LINE L1 -3881 2545 1804 973 92 0 7 chr9 14079345 14079487 -128191957 - L1MB3 LINE L1 -7 6176 6036 7497 177 109 71 chr9 14079487 14079876 -128191568 - L1MCa LINE L1 -4622 1804 1431 2188 172 52 7 chr9 14079876 14080284 -128191160 - MSTB LTR MaLR 0 426 1 7497 177 109 71 chr9 14080284 14081552 -128189892 - L1MCa LINE L1 -4995 1431 23 224 320 26 0 chr9 14081606 14081684 -128189760 + MIR SINE MIR 183 262 0 180 0 0 0 chr9 14081900 14081920 -128189524 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1588 257 44 55 chr9 14082740 14083288 -128188156 - MLT1F LTR MaLR 0 542 1 197 211 0 0 chr9 14083288 14083326 -128188118 + MER5A DNA MER1_type 37 74 -115 3006 206 87 51 chr9 14084155 14085177 -128186267 - MER63D DNA MER1_type 0 1061 3 258 233 11 78 chr9 14087378 14087468 -128183976 - MIR SINE MIR -57 151 68 1272 148 95 15 chr9 14088036 14088300 -128183144 - L1MA5A LINE L1 -4 6293 6009 402 256 22 0 chr9 14088391 14088481 -128182963 + Charlie1 DNA MER1_type 1 92 -2669 2184 109 0 0 chr9 14088567 14088870 -128182574 + AluY SINE Alu 9 311 0 4490 170 96 36 chr9 14088870 14089996 -128181448 + Charlie1 DNA MER1_type 1564 2756 -5 259 254 94 85 chr9 14090339 14090658 -128180786 + L1ME4a LINE L1 5797 6118 -3 622 245 97 46 chr9 14090703 14091095 -128180349 + L1ME4a LINE L1 5675 6086 -35 22 0 0 0 chr9 14091505 14091527 -128179917 + AT_rich Low_complexity Low_complexity 1 22 0 1816 221 34 86 chr9 14092522 14092835 -128178609 + L1M4 LINE L1 3170 3498 -2648 1882 151 24 0 chr9 14092835 14093126 -128178318 + AluSx SINE Alu 1 298 -14 1816 221 34 86 chr9 14093126 14093581 -128177863 + L1M4 LINE L1 3498 3898 -2248 325 300 83 8 chr9 14094127 14094247 -128177197 - MLT1J LTR MaLR -253 258 130 973 280 83 21 chr9 14094247 14094617 -128176827 + MLT1I LTR MaLR 1 393 -16 1513 194 127 17 chr9 14094617 14095020 -128176424 + Charlie1b DNA MER1_type 1 447 -76 597 231 15 15 chr9 14095544 14095674 -128175770 + FLAM_A SINE Alu 1 130 -3 2304 59 0 7 chr9 14095857 14096147 -128175297 + AluY SINE Alu 24 311 0 2206 92 0 0 chr9 14096603 14096913 -128174531 + AluSx SINE Alu 1 310 0 206 264 38 0 chr9 14097737 14097790 -128173654 - L2 LINE L2 -8 3305 3251 1180 148 160 49 chr9 14097830 14098093 -128173351 - AluJb SINE Alu -10 292 1 2221 68 4 0 chr9 14099059 14099339 -128172105 + AluY SINE Alu 1 281 -30 293 267 95 26 chr9 14099664 14099780 -128171664 + MIR SINE MIR 124 247 -15 433 276 126 15 chr9 14101875 14102074 -128169370 - MIR SINE MIR -5 257 37 2162 69 0 7 chr9 14103328 14103603 -128167841 + AluY SINE Alu 35 307 -4 1778 161 10 0 chr9 14103634 14103925 -128167519 - AluJb SINE Alu -5 307 14 701 219 0 0 chr9 14103953 14104081 -128167363 + FLAM_A SINE Alu 1 128 -5 2598 288 97 15 chr9 14104109 14105369 -128166075 + L2 LINE L2 1923 3302 -11 298 241 46 56 chr9 14105407 14105515 -128165929 - L2 LINE L2 -17 3255 3149 1005 171 136 64 chr9 14105524 14105804 -128165640 + MLT1D LTR MaLR 3 302 -203 618 246 66 6 chr9 14106912 14107079 -128164365 + MIR SINE MIR 85 261 -1 268 301 32 0 chr9 14107249 14107342 -128164102 + MLT1J LTR MaLR 106 201 -310 26 74 0 0 chr9 14108045 14108099 -128163345 + AT_rich Low_complexity Low_complexity 1 54 0 8872 103 19 7 chr9 14108877 14110149 -128161295 - HSMAR1 DNA Mariner 0 1287 1 31 44 0 0 chr9 14111211 14111256 -128160188 + AT_rich Low_complexity Low_complexity 1 45 0 42 36 0 0 chr9 14111902 14111958 -128159486 + AT_rich Low_complexity Low_complexity 1 56 0 2202 108 7 0 chr9 14112044 14112351 -128159093 - AluSc SINE Alu 0 309 1 279 125 0 0 chr9 14112618 14112658 -128158786 - Alu SINE Alu -260 41 2 909 171 74 11 chr9 14112660 14112835 -128158609 - MER47A DNA MER2_type -180 186 1 1806 170 0 0 chr9 14114881 14115157 -128156287 + AluSx SINE Alu 1 276 -36 189 0 0 0 chr9 14115157 14115178 -128156266 + (TG)n Simple_repeat Simple_repeat 2 22 0 407 263 126 63 chr9 14115317 14115953 -128155491 + L1MC5 LINE L1 7260 7935 -26 1979 286 60 21 chr9 14116002 14116813 -128154631 - L1ME LINE L1 -5201 869 27 2482 265 93 23 chr9 14117645 14118858 -128152586 - L1ME LINE L1 -2889 3191 1902 1602 222 22 17 chr9 14118858 14119219 -128152225 + MLT1A1 LTR MaLR 1 363 -2 2482 265 93 23 chr9 14119219 14119344 -128152100 - L1ME LINE L1 -4178 1902 1787 1840 161 0 31 chr9 14119418 14119740 -128151704 + AluJb SINE Alu 1 312 0 816 284 83 75 chr9 14119750 14120999 -128150445 - L1ME LINE L1 -4693 1568 324 1734 200 33 80 chr9 14121400 14121443 -128150001 + MLT1A1 LTR MaLR 3 46 -319 837 152 8 0 chr9 14121443 14121575 -128149869 + FLAM_C SINE Alu 1 133 0 1734 200 33 80 chr9 14121575 14121921 -128149523 + MLT1A1 LTR MaLR 46 365 0 339 292 51 36 chr9 14121939 14122076 -128149368 - L1ME LINE L1 -5855 215 77 250 122 0 0 chr9 14122076 14122117 -128149327 + U5 snRNA snRNA 1 41 -75 468 0 0 0 chr9 14124419 14124471 -128146973 + (CA)n Simple_repeat Simple_repeat 2 53 0 278 300 12 0 chr9 14124542 14124702 -128146742 + (TA)n Simple_repeat Simple_repeat 1 162 0 231 184 35 0 chr9 14124737 14124824 -128146620 + (TA)n Simple_repeat Simple_repeat 1 90 0 312 327 25 6 chr9 14125813 14125972 -128145472 + L1ME4a LINE L1 5589 5750 -371 27 49 0 0 chr9 14126008 14126049 -128145395 + AT_rich Low_complexity Low_complexity 1 41 0 26 50 0 0 chr9 14126068 14126108 -128145336 + AT_rich Low_complexity Low_complexity 1 40 0 391 310 78 4 chr9 14126117 14126362 -128145082 + L1ME3A LINE L1 5683 5945 -225 281 235 17 109 chr9 14126435 14126554 -128144890 + L1ME3A LINE L1 5965 6072 -98 2585 98 8 11 chr9 14126680 14127056 -128144388 - THE1C LTR MaLR 0 375 1 1542 43 0 34 chr9 14127854 14128061 -128143383 + L1PA5 LINE L1 5955 6154 0 21 0 0 0 chr9 14128414 14128435 -128143009 + AT_rich Low_complexity Low_complexity 1 21 0 300 381 0 0 chr9 14130441 14130546 -128140898 + GA-rich Low_complexity Low_complexity 4 108 0 370 296 61 0 chr9 14131457 14131555 -128139889 + L2 LINE L2 3150 3253 -19 272 404 31 15 chr9 14132192 14132452 -128138992 + LTR16C LTR ERVL 215 478 -13 763 360 92 14 chr9 14132562 14133140 -128138304 + MERVL LTR ERVL 2637 3259 -2226 186 71 0 0 chr9 14133527 14133555 -128137889 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 468 263 9 9 chr9 14133559 14133673 -128137771 - FLAM_A SINE Alu -19 114 1 386 290 94 12 chr9 14134542 14134707 -128136737 + L1ME4a LINE L1 5845 6066 -55 23 33 0 0 chr9 14134707 14134737 -128136707 + AT_rich Low_complexity Low_complexity 1 30 0 386 290 94 12 chr9 14134737 14134797 -128136647 + L1ME4a LINE L1 6066 6120 -1 1885 161 0 0 chr9 14136050 14136336 -128135108 + AluSx SINE Alu 3 288 -24 273 29 0 0 chr9 14136337 14136371 -128135073 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 25 31 0 0 chr9 14136412 14136444 -128135000 + AT_rich Low_complexity Low_complexity 1 32 0 2112 138 0 13 chr9 14136655 14136959 -128134485 + AluSx SINE Alu 1 300 -12 783 263 6 0 chr9 14136984 14137159 -128134285 + MER45A DNA AcHobo 1 176 -2 265 250 0 0 chr9 14137706 14137758 -128133686 - L2 LINE L2 -38 3234 3183 1448 214 7 23 chr9 14137769 14138078 -128133366 - AluJo SINE Alu -8 304 1 505 208 9 28 chr9 14138365 14138471 -128132973 + L2 LINE L2 3210 3313 0 26 0 0 0 chr9 14139521 14139547 -128131897 + AT_rich Low_complexity Low_complexity 1 26 0 417 210 0 0 chr9 14139601 14139682 -128131762 + MIR SINE MIR 182 262 0 247 197 49 131 chr9 14139684 14139806 -128131638 - MIR SINE MIR -70 192 81 362 309 53 27 chr9 14140069 14140257 -128131187 - L2 LINE L2 -2 3311 3119 29 0 0 0 chr9 14140418 14140447 -128130997 + AT_rich Low_complexity Low_complexity 1 29 0 1443 123 0 0 chr9 14140460 14140655 -128130789 + AluSx SINE Alu 3 197 -115 948 191 5 36 chr9 14140798 14140992 -128130452 - MER5A DNA MER1_type -1 188 1 23 33 0 0 chr9 14143100 14143130 -128128314 + AT_rich Low_complexity Low_complexity 1 30 0 231 358 20 20 chr9 14143326 14143474 -128127970 + MIR SINE MIR 114 261 -1 22 0 0 0 chr9 14143560 14143582 -128127862 + AT_rich Low_complexity Low_complexity 1 22 0 27898 99 8 3 chr9 14143716 14148655 -128122789 - L1PA7 LINE L1 -11 6143 1178 1579 157 92 0 chr9 14148875 14149156 -128122288 - AluJb SINE Alu -5 307 1 1131 143 67 13 chr9 14149357 14149581 -128121863 - Tigger2 DNA MER2_type 0 2718 2483 84 36 0 0 chr9 14149581 14149693 -128121751 + AT_rich Low_complexity Low_complexity 1 112 0 1365 143 5 5 chr9 14149693 14149910 -128121534 - Tigger2 DNA MER2_type -234 2484 2268 1555 201 6 13 chr9 14149913 14150226 -128121218 + AluSx SINE Alu 1 311 -1 363 191 0 0 chr9 14150231 14150294 -128121150 - Tigger2 DNA MER2_type -2655 63 1 210 268 0 18 chr9 14150485 14150541 -128120903 + MIR SINE MIR 197 251 -11 732 260 46 25 chr9 14151972 14152321 -128119123 + L1MB1 LINE L1 3085 3449 -4116 703 224 0 0 chr9 14152322 14152456 -128118988 + AluJo SINE Alu 1 134 -178 410 250 8 0 chr9 14152457 14152577 -128118867 + L1MB1 LINE L1 3447 3567 -4000 856 170 14 7 chr9 14152613 14152760 -128118684 - AluJb SINE Alu -20 292 145 3747 78 10 10 chr9 14152794 14153308 -128118136 + L1PA10 LINE L1 5654 6167 -1 21 0 0 0 chr9 14153311 14153332 -128118112 + AT_rich Low_complexity Low_complexity 1 21 0 1151 255 10 3 chr9 14153339 14153637 -128117807 + L1MB1 LINE L1 6082 6381 -1184 430 205 0 0 chr9 14153779 14153857 -128117587 - AluJ/FRAM SINE Alu -19 293 216 4591 194 19 9 chr9 14153871 14155096 -128116348 + L1MB1 LINE L1 6344 7583 -4 293 250 0 42 chr9 14155234 14155306 -128116138 + L2 LINE L2 3241 3309 -4 229 342 13 0 chr9 14155733 14155809 -128115635 - L2 LINE L2 -299 2973 2897 3994 127 28 8 chr9 14156055 14156707 -128114737 + Tigger3b DNA MER2_type 32 696 -535 1227 125 198 32 chr9 14156703 14156951 -128114493 + Tigger3b DNA MER2_type 944 1232 0 * 201 39 0 0 chr9 14158621 14158647 -128112797 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chr9 14158657 14158687 -128112757 + AT_rich Low_complexity Low_complexity 1 30 0 212 331 55 31 chr9 14159020 14159147 -128112297 - L2 LINE L2 -830 2484 2355 21 0 0 0 chr9 14159284 14159305 -128112139 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr9 14160332 14160361 -128111083 + (TG)n Simple_repeat Simple_repeat 2 30 0 31 96 0 0 chr9 14160648 14160742 -128110702 + AT_rich Low_complexity Low_complexity 1 94 0 1302 53 0 24 chr9 14160825 14160994 -128110450 + AluY SINE Alu 134 298 -13 25 51 0 0 chr9 14161950 14161989 -128109455 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr9 14162155 14162179 -128109265 + AT_rich Low_complexity Low_complexity 1 24 0 5310 20 0 0 chr9 14162914 14163524 -128107920 + L1PA2 LINE L1 5545 6154 -1 499 176 0 11 chr9 14164212 14164303 -128107141 + HY4 scRNA scRNA 1 90 -3 340 229 42 76 chr9 14164861 14164979 -128106465 + MIR3 SINE MIR 54 167 -41 2154 175 56 10 chr9 14165354 14165766 -128105678 - MSTB1 LTR MaLR -1 431 1 867 283 88 34 chr9 14166039 14166538 -128104906 + L2 LINE L2 1447 1972 -1342 20223 160 70 53 chr9 14166543 14166609 -128104835 + L1MA2 LINE L1 13 76 -7647 2381 71 3 13 chr9 14166609 14166919 -128104525 - AluY SINE Alu -4 307 1 20223 160 70 53 chr9 14166919 14169879 -128101565 + L1MA2 LINE L1 76 2985 -4738 2034 121 16 23 chr9 14169879 14170185 -128101259 + AluSc SINE Alu 1 304 -5 20223 160 70 53 chr9 14170185 14172558 -128098886 + L1MA2 LINE L1 2985 5317 -2406 1966 163 28 17 chr9 14172558 14172913 -128098531 - THE1C LTR MaLR 0 375 17 20223 160 70 53 chr9 14172913 14174746 -128096698 + L1MA2 LINE L1 5317 7723 0 228 242 91 0 chr9 14174758 14174824 -128096620 + L2 LINE L2 1996 2067 -1247 357 238 73 78 chr9 14174825 14175031 -128096413 - L1ME3A LINE L1 -1 6169 5965 233 200 0 38 chr9 14175113 14175193 -128096251 - L1MC5 LINE L1 -431 7530 7454 617 314 34 25 chr9 14175278 14175517 -128095927 + L2 LINE L2 2461 2701 -613 713 265 88 8 chr9 14175590 14175839 -128095605 - L1MC4 LINE L1 -233 7809 7541 712 162 14 21 chr9 14175849 14175991 -128095453 - L1MC1 LINE L1 0 6333 6193 1165 141 0 198 chr9 14175994 14176362 -128095082 + L1MC2 LINE L1 5907 6201 -143 1163 123 5 5 chr9 14176380 14176575 -128094869 - L1MC1 LINE L1 -435 5898 5704 1327 123 50 3 chr9 14176577 14176895 -128094549 - L1MCa LINE L1 -4128 2298 1926 2816 16 0 0 chr9 14176896 14177207 -128094237 + AluYa5 SINE Alu 1 311 0 3843 192 23 54 chr9 14177315 14177911 -128093533 - L1MCa LINE L1 -5518 908 295 237 65 0 0 chr9 14177911 14177942 -128093502 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1812 161 0 0 chr9 14177946 14178220 -128093224 - AluSx SINE Alu -37 275 2 3843 192 23 54 chr9 14178220 14178474 -128092970 - L1MCa LINE L1 -6134 292 79 2018 251 238 22 chr9 14178505 14179374 -128092070 - L1MC4 LINE L1 -528 7514 6458 1777 156 38 27 chr9 14179824 14180195 -128091249 + THE1C LTR MaLR 1 375 0 484 289 93 81 chr9 14180215 14180821 -128090623 + L2 LINE L2 2687 3309 -4 230 346 0 25 chr9 14181298 14181379 -128090065 + L2 LINE L2 3232 3310 -3 21 71 0 0 chr9 14181786 14181828 -128089616 + AT_rich Low_complexity Low_complexity 1 42 0 1911 119 0 0 chr9 14183294 14183562 -128087882 + AluSq SINE Alu 46 313 0 2164 103 3 3 chr9 14183650 14183941 -128087503 + AluSg1 SINE Alu 1 291 -18 316 269 14 92 chr9 14184009 14184150 -128087294 + MIR3 SINE MIR 13 142 -66 208 239 0 0 chr9 14185011 14185057 -128086387 + CT-rich Low_complexity Low_complexity 2 47 0 1817 145 46 36 chr9 14185144 14185448 -128085996 + AluSx SINE Alu 4 310 -2 190 261 0 90 chr9 14186053 14186164 -128085280 + MIR SINE MIR 147 247 -15 660 191 41 7 chr9 14186735 14186882 -128084562 - MER3 DNA MER1_type -10 199 48 2260 167 101 83 chr9 14186892 14187563 -128083881 - LTR8 LTR ERV1 -8 683 1 2198 122 10 0 chr9 14188461 14188755 -128082689 + AluSx SINE Alu 1 297 -15 35 0 0 0 chr9 14189251 14189286 -128082158 + AT_rich Low_complexity Low_complexity 1 35 0 345 215 20 40 chr9 14190117 14190138 -128081306 - L1MA10 LINE L1 -3 6331 6311 1079 222 43 40 chr9 14190138 14190490 -128080954 - L1ME2 LINE L1 -12 6152 5800 1439 246 39 47 chr9 14190548 14191040 -128080404 - MLT1E2 LTR MaLR 0 626 139 354 23 0 0 chr9 14191167 14191210 -128080234 + (TG)n Simple_repeat Simple_repeat 2 44 0 426 256 50 8 chr9 14191789 14191910 -128079534 + MER115 DNA AcHobo 567 692 -1 243 333 62 6 chr9 14191989 14192151 -128079293 - L1MEd LINE L1 -5663 456 286 1853 155 3 3 chr9 14192506 14192824 -128078620 + AluSx SINE Alu 1 318 0 642 347 70 66 chr9 14192990 14193734 -128077710 + L2 LINE L2 2288 3032 -240 230 261 225 29 chr9 14193913 14194051 -128077393 + MIR3 SINE MIR 20 184 -24 24 32 0 0 chr9 14194404 14194435 -128077009 + AT_rich Low_complexity Low_complexity 1 31 0 183 182 61 0 chr9 14194529 14194595 -128076849 + (TGAA)n Simple_repeat Simple_repeat 1 70 0 446 316 15 25 chr9 14195143 14195339 -128076105 + L2 LINE L2 3118 3311 -2 561 84 0 0 chr9 14196509 14196580 -128074864 - AluS SINE Alu -232 80 10 280 172 172 13 chr9 14197136 14197287 -128074157 + MER33 DNA MER1_type 48 222 -102 398 148 69 0 chr9 14197362 14197463 -128073981 + MER33 DNA MER1_type 171 278 -46 578 240 176 28 chr9 14197881 14198240 -128073204 + L1MC5 LINE L1 7474 7885 -76 27 0 0 0 chr9 14198980 14199007 -128072437 + AT_rich Low_complexity Low_complexity 1 27 0 281 358 74 20 chr9 14199327 14199475 -128071969 - L2 LINE L2 -1 3271 3116 2219 122 0 0 chr9 14200803 14201098 -128070346 + AluSx SINE Alu 1 295 -17 236 233 244 22 chr9 14201563 14201743 -128069701 - MLT1L LTR MaLR -80 535 316 348 183 0 0 chr9 14201844 14201904 -128069540 - MER81 DNA DNA 0 114 55 542 261 0 39 chr9 14202065 14202245 -128069199 - MER5B DNA MER1_type -4 174 2 505 336 85 9 chr9 14202962 14203185 -128068259 - MIR SINE MIR -21 241 2 268 298 63 31 chr9 14203896 14204033 -128067411 + MIR3 SINE MIR 26 169 -39 2812 128 14 0 chr9 14204445 14204873 -128066571 - MER57B LTR ERV1 0 434 1 2522 137 31 19 chr9 14204884 14205478 -128065966 + MER4E LTR ERV1 1 779 0 706 163 111 58 chr9 14205762 14205952 -128065492 - MER3 DNA MER1_type 0 209 10 26 0 0 0 chr9 14206999 14207025 -128064419 + AT_rich Low_complexity Low_complexity 1 26 0 2229 110 3 10 chr9 14207032 14207333 -128064111 + AluSp SINE Alu 1 299 -14 185 176 137 0 chr9 14207432 14207483 -128063961 - MIR SINE MIR -98 164 107 714 306 103 16 chr9 14207548 14207973 -128063471 - MLT1K LTR MaLR 0 588 127 437 164 58 174 chr9 14208241 14208448 -128062996 + MLT1D LTR MaLR 5 187 -318 705 243 17 6 chr9 14209810 14209983 -128061461 - LTR40a LTR ERVL -344 175 1 377 255 128 4 chr9 14210883 14211268 -128060176 - L1MC4a LINE L1 -216 5905 5523 252 359 0 13 chr9 14211742 14211820 -128059624 + MIR SINE MIR 3 79 -183 446 303 73 18 chr9 14212244 14212409 -128059035 + MIR SINE MIR 77 250 -12 268 221 263 0 chr9 14212431 14212526 -128058918 + L2 LINE L2 3192 3311 -2 1519 128 0 9 chr9 14212738 14212965 -128058479 - AluJb SINE Alu -4 308 84 23 0 0 0 chr9 14214518 14214541 -128056903 + AT_rich Low_complexity Low_complexity 1 23 0 314 370 25 0 chr9 14214759 14214878 -128056566 - L2 LINE L2 -17 3255 3134 22 35 0 0 chr9 14214903 14214932 -128056512 + AT_rich Low_complexity Low_complexity 1 29 0 332 222 0 0 chr9 14215165 14215237 -128056207 - MIR SINE MIR -21 241 170 2167 134 0 0 chr9 14215606 14215913 -128055531 + AluSx SINE Alu 1 307 -5 1047 63 0 0 chr9 14216073 14216229 -128055215 + AluY SINE Alu 170 325 0 215 253 160 13 chr9 14217327 14217402 -128054042 - L2 LINE L2 -1 3271 3186 2456 92 0 0 chr9 14217736 14218039 -128053405 + AluSx SINE Alu 1 303 -9 306 309 206 6 chr9 14218973 14219138 -128052306 + MIR SINE MIR 45 242 -20 22 35 0 0 chr9 14221058 14221087 -128050357 + AT_rich Low_complexity Low_complexity 1 29 0 728 187 0 8 chr9 14221087 14221210 -128050234 + FLAM_C SINE Alu 1 122 -21 3602 45 2 0 chr9 14221552 14221995 -128049449 + L1PA6 LINE L1 5708 6151 -3 25 0 0 0 chr9 14222202 14222227 -128049217 + AT_rich Low_complexity Low_complexity 1 25 0 322 250 130 10 chr9 14223406 14223506 -128047938 - L2 LINE L2 -22 3291 3180 287 127 0 36 chr9 14223508 14223563 -128047881 - MLT2B1 LTR ERVL 0 520 468 282 250 0 0 chr9 14223651 14223739 -128047705 + (TA)n Simple_repeat Simple_repeat 2 89 0 1030 209 45 126 chr9 14223739 14224183 -128047261 - MLT2B1 LTR ERVL -40 480 73 552 281 21 68 chr9 14224205 14224486 -128046958 + L2 LINE L2 2212 2479 -835 451 371 38 26 chr9 14224769 14225082 -128046362 + L2 LINE L2 2872 3188 -84 1699 177 7 30 chr9 14225702 14226001 -128045443 - AluJo SINE Alu -20 292 1 3203 56 2 71 chr9 14226039 14226520 -128044924 + LTR7 LTR ERV1 1 448 -2 18764 85 41 18 chr9 14226522 14229441 -128042003 + HERVH LTR ERV1 1 2987 -4726 804 149 20 0 chr9 14229435 14229583 -128041861 + HERVH LTR ERV1 3140 3290 -4423 * 3152 113 4 10 chr9 14229573 14230078 -128041366 + HERVH LTR ERV1 3492 3993 -3720 4063 140 1 3 chr9 14230080 14230743 -128040701 + HERVH LTR ERV1 4488 5149 -2564 1280 120 18 40 chr9 14230744 14230969 -128040475 + HERVH LTR ERV1 5600 5819 -1894 2196 88 59 13 chr9 14230969 14231342 -128040102 + HERVH LTR ERV1 7324 7713 0 3222 54 2 71 chr9 14231342 14231823 -128039621 + LTR7 LTR ERV1 1 448 -2 24 32 0 0 chr9 14231931 14231962 -128039482 + AT_rich Low_complexity Low_complexity 1 31 0 2195 206 40 6 chr9 14231970 14232471 -128038973 - MLT1F1 LTR MaLR 0 567 50 1184 98 10 26 chr9 14232500 14232694 -128038750 - L1PB1 LINE L1 -2 6149 5959 457 105 51 13 chr9 14232789 14232928 -128038516 - L1PBa LINE L1 -5463 1400 1112 2230 84 0 3 chr9 14232928 14233239 -128038205 + AluY SINE Alu 1 310 0 1785 132 0 4 chr9 14233346 14233597 -128037847 - AluSc SINE Alu -59 250 1 207 231 0 46 chr9 14233623 14233688 -128037756 + CT-rich Low_complexity Low_complexity 5 66 0 297 345 98 5 chr9 14233831 14234034 -128037410 - HERV16 LTR ERVL -3422 1574 1353 529 347 10 40 chr9 14234043 14234343 -128037101 - HERV16 LTR ERVL -3760 1236 946 567 230 32 28 chr9 14234347 14234571 -128036873 - MER61D LTR ERV1 0 743 222 765 350 34 11 chr9 14235115 14235583 -128035861 - HERV16 LTR ERVL -4154 842 364 978 294 72 11 chr9 14235906 14236280 -128035164 - LTR16A LTR ERVL -8 442 46 205 300 11 33 chr9 14237801 14237891 -128033553 - MIR SINE MIR -70 192 105 833 256 125 14 chr9 14238280 14238631 -128032813 + L1MC4 LINE L1 7525 7914 -128 34 24 0 0 chr9 14238644 14238685 -128032759 + AT_rich Low_complexity Low_complexity 1 41 0 418 153 66 3 chr9 14238685 14239028 -128032416 + (TA)n Simple_repeat Simple_repeat 1 364 0 284 280 54 0 chr9 14239031 14239124 -128032320 + L1MC4 LINE L1 7929 8026 -16 821 241 73 8 chr9 14240833 14241078 -128030366 + MIR SINE MIR 1 261 -1 191 284 42 63 chr9 14241412 14241507 -128029937 + L2 LINE L2 3140 3232 -40 3046 100 33 113 chr9 14242243 14242851 -128028593 - L1PA12 LINE L1 -16 6152 5594 2379 94 0 0 chr9 14243643 14243950 -128027494 + AluSc SINE Alu 1 307 -2 798 251 126 46 chr9 14243975 14244453 -128026991 - MLT1G3 LTR MaLR -5 537 2 270 136 0 0 chr9 14244591 14244635 -128026809 + (TG)n Simple_repeat Simple_repeat 1 44 0 26 74 0 0 chr9 14245596 14245650 -128025794 + AT_rich Low_complexity Low_complexity 1 54 0 381 317 83 24 chr9 14245662 14245952 -128025492 + L1M4 LINE L1 3869 4175 -1971 298 175 0 0 chr9 14245985 14246048 -128025396 - L1MA7 LINE L1 -4 6287 6225 1743 195 74 18 chr9 14246311 14246746 -128024698 - MLT1C LTR MaLR 0 467 9 203 0 0 36 chr9 14246992 14247020 -128024424 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1832 110 28 62 chr9 14247028 14247318 -128024126 - AluSx SINE Alu -32 280 1 315 277 189 69 chr9 14247321 14247480 -128023964 + MER5B DNA MER1_type 1 178 0 360 252 64 120 chr9 14247914 14248148 -128023296 + L1MC/D LINE L1 5564 5784 -2024 239 226 17 17 chr9 14251052 14251167 -128020277 + (TA)n Simple_repeat Simple_repeat 1 115 0 333 0 0 0 chr9 14251207 14251244 -128020200 + (CA)n Simple_repeat Simple_repeat 2 38 0 192 313 106 39 chr9 14251327 14251506 -128019938 - MIR SINE MIR -55 207 17 22 0 0 0 chr9 14251911 14251933 -128019511 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr9 14252426 14252477 -128018967 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr9 14252510 14252539 -128018905 + AT_rich Low_complexity Low_complexity 1 29 0 213 232 34 147 chr9 14252688 14252865 -128018579 + L3 LINE CR1 1162 1318 -259 573 132 0 11 chr9 14252894 14252985 -128018459 + MLT2B2 LTR ERVL 1 90 -425 * 1152 245 4 4 chr9 14252971 14253212 -128018232 - MLT1A1 LTR MaLR -124 241 1 2501 50 3 0 chr9 14253551 14253851 -128017593 - AluY SINE Alu -7 304 4 733 267 194 22 chr9 14253857 14254448 -128016996 + L2 LINE L2 2519 3313 0 363 278 132 103 chr9 14254738 14255156 -128016288 + MLT1J LTR MaLR 33 462 -49 2291 101 3 0 chr9 14255198 14255504 -128015940 - AluSx SINE Alu -5 307 1 21 0 0 0 chr9 14255538 14255559 -128015885 + AT_rich Low_complexity Low_complexity 1 21 0 334 339 43 21 chr9 14255662 14255848 -128015596 - MIR SINE MIR -14 248 59 246 203 14 14 chr9 14256441 14256510 -128014934 - L1MCa LINE L1 -4353 2073 2005 1676 270 59 26 chr9 14257852 14258344 -128013100 - MLT1H LTR MaLR 0 549 42 565 250 9 0 chr9 14258353 14258469 -128012975 + MLT1H LTR MaLR 238 354 -195 1976 25 0 13 chr9 14258920 14259156 -128012288 - L1PA3 LINE L1 -523 5632 5400 4275 24 20 0 chr9 14259156 14259655 -128011789 + L1PA3 LINE L1 5641 6152 -3 29 28 0 0 chr9 14261306 14261342 -128010102 + AT_rich Low_complexity Low_complexity 1 36 0 427 319 17 21 chr9 14261944 14262185 -128009259 + MER112 DNA MER1_type 20 259 -1 23 0 0 0 chr9 14262366 14262389 -128009055 + AT_rich Low_complexity Low_complexity 1 23 0 297 289 87 13 chr9 14262405 14262564 -128008880 - MIR SINE MIR -63 145 14 290 222 79 0 chr9 14264049 14264112 -128007332 + L2 LINE L2 3203 3270 -2 582 149 11 0 chr9 14264865 14264952 -128006492 - AluJo SINE Alu -23 289 202 279 211 0 92 chr9 14264952 14265028 -128006416 - AluJo SINE Alu -148 154 86 22 35 0 0 chr9 14265094 14265123 -128006321 + AT_rich Low_complexity Low_complexity 1 29 0 259 282 10 58 chr9 14265347 14265450 -128005994 + MIR SINE MIR 97 194 -68 1626 297 74 5 chr9 14265474 14266169 -128005275 - L2 LINE L2 -8 3305 2547 2987 99 30 7 chr9 14266170 14266604 -128004840 - MLT2A1 LTR ERVL 0 444 1 1450 70 0 0 chr9 14266604 14266803 -128004641 - HERVL-A1 LTR ERVL 0 5654 5456 284 122 0 0 chr9 14266803 14266844 -128004600 - MLT2A1 LTR ERVL -403 41 1 1679 282 124 17 chr9 14266845 14267600 -128003844 - L2 LINE L2 -765 2549 1714 1232 242 105 44 chr9 14267613 14268089 -128003355 + MLT1H LTR MaLR 14 518 -31 470 258 96 39 chr9 14268148 14268377 -128003067 - L2 LINE L2 -1607 1707 1466 1792 148 13 17 chr9 14269002 14269300 -128002144 - AluSx SINE Alu -15 297 1 701 297 10 0 chr9 14270333 14270528 -128000916 + L1MCc LINE L1 280 476 -5947 900 283 30 17 chr9 14271004 14271304 -128000140 + L1MCc LINE L1 825 1128 -5295 490 223 16 8 chr9 14271301 14271422 -128000022 + L1ME1 LINE L1 4928 5049 -1097 * 2752 231 41 37 chr9 14271451 14272263 -127999181 + L1ME1 LINE L1 5349 6163 -3 25 51 0 0 chr9 14273546 14273585 -127997859 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr9 14273868 14273891 -127997553 + AT_rich Low_complexity Low_complexity 1 23 0 465 274 75 44 chr9 14273995 14274408 -127997036 + L1ME4a LINE L1 5694 6119 -2 935 247 57 4 chr9 14274827 14275054 -127996390 - MIR SINE MIR -21 241 3 326 160 0 13 chr9 14275102 14275177 -127996267 + (TA)n Simple_repeat Simple_repeat 2 75 0 236 221 50 0 chr9 14275177 14275264 -127996180 + L1MC3 LINE L1 6572 6646 -1139 1983 136 7 3 chr9 14275264 14275565 -127995879 - AluSx SINE Alu -10 302 1 22 0 0 0 chr9 14275568 14275590 -127995854 + AT_rich Low_complexity Low_complexity 1 22 0 2139 118 3 0 chr9 14275597 14275894 -127995550 + AluSx SINE Alu 1 298 -14 2159 112 7 3 chr9 14276379 14276683 -127994761 - AluSx SINE Alu -3 309 5 1783 169 7 10 chr9 14277091 14277376 -127994068 + AluJb SINE Alu 1 285 -23 240 59 0 0 chr9 14277376 14277410 -127994034 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 216 260 13 26 chr9 14279214 14279291 -127992153 + A-rich Low_complexity Low_complexity 3 78 0 299 200 15 0 chr9 14279761 14279826 -127991618 - MLT1E2 LTR MaLR -2 624 559 2021 66 0 8 chr9 14280265 14280523 -127990921 + AluY SINE Alu 53 308 -3 1994 219 92 43 chr9 14280749 14281311 -127990133 - MLT1G1 LTR MaLR 0 595 6 1618 170 12 49 chr9 14283594 14283918 -127987526 - AluJo SINE Alu 0 312 1 21 0 0 0 chr9 14285080 14285101 -127986343 + AT_rich Low_complexity Low_complexity 1 21 0 2240 109 0 0 chr9 14285176 14285478 -127985966 - AluSx SINE Alu 0 312 11 267 276 69 102 chr9 14286783 14287029 -127984415 - MLT1K LTR MaLR -168 420 183 328 298 97 32 chr9 14287137 14287261 -127984183 - L2 LINE L2 0 3272 3141 1089 163 36 5 chr9 14287448 14287644 -127983800 + MER6B DNA MER2_type 9 210 0 323 288 118 66 chr9 14287659 14287826 -127983618 - MIR SINE MIR -37 225 43 1754 184 38 70 chr9 14287826 14288272 -127983172 - MSTB1 LTR MaLR 0 432 1 323 288 118 66 chr9 14288272 14288316 -127983128 - MIR SINE MIR -219 43 3 1997 200 76 24 chr9 14288584 14289424 -127982020 - L1ME1 LINE L1 -313 5853 4972 1211 237 29 0 chr9 14289418 14289734 -127981710 + L1ME1 LINE L1 4651 4975 -1171 * 227 258 24 48 chr9 14290282 14290326 -127981118 - L1ME LINE L1 -536 5634 5590 1718 206 48 33 chr9 14290326 14290786 -127980658 - MLT1C LTR MaLR 0 467 1 227 258 24 48 chr9 14290786 14290865 -127980579 - L1ME LINE L1 -580 5590 5514 265 259 14 43 chr9 14290935 14291104 -127980340 - L1P LINE L1 -727 5424 5255 233 310 0 0 chr9 14291295 14291366 -127980078 + (CA)n Simple_repeat Simple_repeat 1 71 0 229 306 0 10 chr9 14291972 14292070 -127979374 - MLT1I LTR MaLR -8 401 305 324 273 53 8 chr9 14292193 14292325 -127979119 - MLT1J2 LTR MaLR -310 140 3 1280 193 146 71 chr9 14293458 14293925 -127977519 - MLT1D LTR MaLR -3 502 1 4638 181 14 11 chr9 14294931 14296046 -127975398 - L1MB1 LINE L1 0 6168 5049 1949 169 66 27 chr9 14296862 14296959 -127974485 + L1MA9 LINE L1 5684 5776 -536 276 30 0 0 chr9 14296959 14296992 -127974452 + (CA)n Simple_repeat Simple_repeat 2 34 0 1949 169 66 27 chr9 14296992 14297333 -127974111 + L1MA9 LINE L1 5776 6139 -173 974 164 6 6 chr9 14298902 14299085 -127972359 + L1MA9 LINE L1 6130 6312 0 2055 108 29 0 chr9 14300700 14300978 -127970466 - AluSx SINE Alu -26 286 1 199 355 82 0 chr9 14301390 14301500 -127969944 + L2 LINE L2 3149 3267 -5 706 222 17 0 chr9 14301668 14301844 -127969600 + L1 LINE L1 4472 4650 -1496 3698 125 24 13 chr9 14301845 14302459 -127968985 + L1PA16 LINE L1 5533 6153 -13 739 144 0 0 chr9 14302477 14302588 -127968856 + FLAM_C SINE Alu 1 111 -32 267 93 0 0 chr9 14302589 14302632 -127968812 + (GA)n Simple_repeat Simple_repeat 2 44 0 474 296 17 47 chr9 14302699 14302871 -127968573 - L2 LINE L2 0 3313 3147 651 279 98 41 chr9 14303268 14303584 -127967860 - L2 LINE L2 -171 3142 2809 28 29 0 0 chr9 14305262 14305297 -127966147 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr9 14305527 14305557 -127965887 + AT_rich Low_complexity Low_complexity 1 30 0 316 329 95 30 chr9 14305563 14305794 -127965650 - L2 LINE L2 -43 3270 3025 325 198 25 12 chr9 14305936 14306017 -127965427 - MER103 DNA DNA -41 125 44 189 351 119 22 chr9 14306309 14306443 -127965001 - L2 LINE L2 -607 2707 2561 283 60 16 66 chr9 14306973 14307223 -127964221 + AluY SINE Alu 1 299 -1 293 231 0 0 chr9 14307484 14307549 -127963895 + MIR SINE MIR 59 123 -139 2141 123 0 3 chr9 14307549 14307858 -127963586 - AluSx SINE Alu -3 309 2 2135 110 0 3 chr9 14308871 14309161 -127962283 - AluSg SINE Alu -21 289 1 320 254 30 60 chr9 14309545 14309679 -127961765 + L2 LINE L2 3143 3272 0 197 242 0 48 chr9 14309722 14309784 -127961660 + MIR SINE MIR 191 249 -13 * 242 146 42 0 chr9 14309752 14309800 -127961644 + L2 LINE L2 3263 3312 -1 258 111 89 0 chr9 14310053 14310098 -127961346 + L2 LINE L2 3264 3312 -1 1082 159 10 20 chr9 14310915 14311110 -127960334 + AluJb SINE Alu 120 312 0 1666 247 62 14 chr9 14311219 14311782 -127959662 - L1ME2 LINE L1 -16 6148 5559 1549 203 49 49 chr9 14311787 14312240 -127959204 - MLT1C LTR MaLR -8 459 7 1196 233 62 68 chr9 14312245 14312616 -127958828 - L1ME2 LINE L1 -597 5567 5195 2065 129 6 10 chr9 14312616 14312927 -127958517 - AluSx SINE Alu 0 312 3 1196 233 62 68 chr9 14312927 14313563 -127957881 - L1ME2 LINE L1 -969 5195 4575 40601 35 22 1 chr9 14313825 14319851 -127951593 + L1PA2 LINE L1 1 6154 -1 31 26 0 0 chr9 14320018 14320056 -127951388 + AT_rich Low_complexity Low_complexity 1 38 0 914 182 17 6 chr9 14321282 14321458 -127949986 - MER45A DNA AcHobo 0 178 1 203 326 58 23 chr9 14322086 14322172 -127949272 - L2 LINE L2 -4 3309 3221 285 307 223 5 chr9 14322267 14322469 -127948975 - MIR SINE MIR -16 246 1 266 341 116 51 chr9 14322655 14323069 -127948375 - L2 LINE L2 -402 2912 2472 1931 167 0 3 chr9 14323207 14323518 -127947926 - AluJo SINE Alu -2 310 1 547 199 0 15 chr9 14324517 14324653 -127946791 + (CA)n Simple_repeat Simple_repeat 2 135 0 360 43 0 0 chr9 14327701 14327747 -127943697 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 293 271 41 16 chr9 14328484 14328606 -127942838 - LTR16B LTR ERVL -74 390 266 23 33 0 0 chr9 14329813 14329843 -127941601 + AT_rich Low_complexity Low_complexity 1 30 0 229 263 53 0 chr9 14330147 14330204 -127941240 - MIR SINE MIR -67 141 82 1544 215 26 26 chr9 14330227 14330608 -127940836 + MLT2D LTR ERVL 22 402 -12 417 86 0 0 chr9 14332214 14332272 -127939172 + (TG)n Simple_repeat Simple_repeat 2 59 0 1753 184 52 0 chr9 14332702 14333049 -127938395 - MLT1A1 LTR MaLR 0 365 1 1144 242 38 63 chr9 14333268 14333296 -127938148 + L1MC4 LINE L1 7549 7576 -466 2206 129 7 0 chr9 14333296 14333606 -127937838 + AluSx SINE Alu 1 312 0 1144 242 38 63 chr9 14333606 14334082 -127937362 + L1MC4 LINE L1 7576 8040 -2 200 149 0 90 chr9 14334305 14334372 -127937072 + (TAAAAA)n Simple_repeat Simple_repeat 3 63 0 282 304 10 20 chr9 14334389 14334491 -127936953 + MIR SINE MIR 53 153 -109 1913 112 0 45 chr9 14334973 14335260 -127936184 - AluSx SINE Alu -24 288 15 208 278 241 9 chr9 14335996 14336104 -127935340 - MIR3 SINE MIR -53 155 23 277 304 65 11 chr9 14336377 14336469 -127934975 - L2 LINE L2 -5 3267 3171 296 426 7 7 chr9 14338135 14338283 -127933161 + MIR3 SINE MIR 29 176 -32 1092 168 41 0 chr9 14338823 14339019 -127932425 + MER3 DNA MER1_type 6 209 0 349 120 0 0 chr9 14338976 14339026 -127932418 - MER3 DNA MER1_type -119 90 41 * 552 294 0 19 chr9 14339076 14339236 -127932208 - MER5B DNA MER1_type -21 157 1 333 345 108 14 chr9 14339543 14339691 -127931753 + L2 LINE L2 3107 3268 -4 318 253 11 11 chr9 14339812 14339899 -127931545 + (TG)n Simple_repeat Simple_repeat 1 87 0 341 293 61 0 chr9 14340892 14340991 -127930453 - MIR3 SINE MIR -9 199 95 333 211 45 15 chr9 14341444 14341577 -127929867 + L1M2 LINE L1 2682 2818 -4031 195 243 0 0 chr9 14341584 14341621 -127929823 - MIR SINE MIR -150 112 76 38 39 0 0 chr9 14342418 14342470 -127928974 + AT_rich Low_complexity Low_complexity 1 52 0 438 20 0 0 chr9 14342622 14342673 -127928771 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 261 0 0 0 chr9 14343075 14343104 -127928340 + (CA)n Simple_repeat Simple_repeat 2 30 0 29 47 0 0 chr9 14343249 14343292 -127928152 + AT_rich Low_complexity Low_complexity 1 43 0 3623 202 59 26 chr9 14343303 14343846 -127927598 + L1MC2 LINE L1 4812 5336 -1008 1733 181 3 16 chr9 14343846 14344149 -127927295 + AluJb SINE Alu 1 299 -13 3623 202 59 26 chr9 14344149 14344884 -127926560 + L1MC2 LINE L1 5336 6222 -122 2495 56 13 3 chr9 14344886 14345192 -127926252 + AluY SINE Alu 1 309 -2 21 0 0 0 chr9 14345327 14345348 -127926096 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr9 14346092 14346127 -127925317 + AT_rich Low_complexity Low_complexity 1 35 0 793 284 132 84 chr9 14346619 14347284 -127924160 + L1MEc LINE L1 39 671 -5725 2277 102 0 3 chr9 14347284 14347579 -127923865 + AluSq SINE Alu 1 294 -19 793 284 132 84 chr9 14347579 14348309 -127923135 + L1MEc LINE L1 671 1501 -4895 693 95 11 0 chr9 14348356 14348451 -127922993 - MLT1B LTR MaLR 0 390 295 246 113 75 19 chr9 14348489 14348542 -127922902 - MLT2B1 LTR ERVL 0 520 465 1460 192 112 33 chr9 14348662 14349027 -127922417 - MLT2B1 LTR ERVL -126 394 1 1134 200 26 4 chr9 14349027 14349254 -127922190 - MLT1B LTR MaLR -158 232 1 563 256 73 18 chr9 14349254 14349473 -127921971 + L1MEc LINE L1 1541 1771 -4625 * 2114 291 62 9 chr9 14349467 14350161 -127921283 + L1ME1 LINE L1 25 755 -5641 1130 123 5 37 chr9 14350165 14350352 -127921092 + AluSg/x SINE Alu 117 297 -12 356 170 29 164 chr9 14350354 14350431 -127921013 + L1ME1 LINE L1 764 807 -5589 1556 182 10 40 chr9 14350431 14350727 -127920717 + AluJo SINE Alu 1 287 -25 356 170 29 164 chr9 14350727 14350820 -127920624 + L1ME1 LINE L1 807 911 -5485 1783 286 83 9 chr9 14350881 14351678 -127919766 + L1ME1 LINE L1 1248 2103 -4293 678 204 3 28 chr9 14351692 14351915 -127919529 + MLT1A1 LTR MaLR 1 363 -2 1817 241 39 30 chr9 14351916 14352689 -127918755 + L1ME1 LINE L1 2118 2854 -3361 7001 150 20 16 chr9 14352689 14352969 -127918475 - Tigger3b DNA MER2_type -1797 1231 954 3030 127 79 16 chr9 14352969 14353465 -127917979 - MER1A DNA MER1_type 0 527 1 7001 150 20 16 chr9 14353465 14354409 -127917035 - Tigger3b DNA MER2_type -2074 954 2 6175 224 81 59 chr9 14354410 14354812 -127916632 + L1ME1 LINE L1 2853 3244 -2991 2043 113 17 10 chr9 14354812 14355112 -127916332 + AluSc SINE Alu 1 302 -7 6175 224 81 59 chr9 14355112 14355599 -127915845 + L1ME1 LINE L1 3244 3719 -2516 1677 168 6 56 chr9 14355599 14355921 -127915523 + AluJo SINE Alu 1 306 -6 6175 224 81 59 chr9 14355921 14357869 -127913575 + L1ME1 LINE L1 3719 5789 -446 2599 31 0 0 chr9 14357869 14358163 -127913281 - AluY SINE Alu -17 294 1 6175 224 81 59 chr9 14358163 14358611 -127912833 + L1ME1 LINE L1 5789 6225 -10 319 313 22 30 chr9 14359136 14359270 -127912174 + MIR SINE MIR 15 147 -115 9026 125 32 32 chr9 14360442 14360917 -127910527 + Tigger1 DNA MER2_type 1 475 -1943 936 177 12 0 chr9 14360917 14361081 -127910363 + FAM SINE Alu 3 168 -7 9026 125 32 32 chr9 14361081 14362117 -127909327 + Tigger1 DNA MER2_type 475 1511 -907 1123 129 0 0 chr9 14362117 14362280 -127909164 - AluSg/x SINE Alu 0 312 150 5640 132 21 9 chr9 14362280 14363190 -127908254 + Tigger1 DNA MER2_type 1498 2418 0 195 42 0 0 chr9 14363750 14363774 -127907670 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2140 46 32 18 chr9 14363776 14364056 -127907388 - AluY SINE Alu -27 284 1 247 261 315 0 chr9 14366315 14366407 -127905037 + MIR3 SINE MIR 40 160 -48 210 250 70 60 chr9 14367295 14367395 -127904049 - MIR SINE MIR 0 262 162 * 232 390 71 18 chr9 14367381 14367550 -127903894 - L2 LINE L2 -225 3047 2870 2133 142 0 0 chr9 14368283 14368593 -127902851 + AluSx SINE Alu 1 310 -2 333 203 81 25 chr9 14368662 14368786 -127902658 - MER34C LTR ERV1 0 585 413 668 252 48 60 chr9 14368807 14369129 -127902315 - MER34 LTR ERV1 -184 523 1 205 260 0 0 chr9 14372752 14372802 -127898642 + CT-rich Low_complexity Low_complexity 1 50 0 36 53 0 0 chr9 14372982 14373039 -127898405 + AT_rich Low_complexity Low_complexity 1 57 0 312 286 143 19 chr9 14374817 14374978 -127896466 - MIR SINE MIR -70 192 12 3253 124 49 5 chr9 14375144 14375729 -127895715 + MER4B LTR ERV1 1 779 0 1345 143 27 82 chr9 14375819 14376113 -127895331 + AluJb SINE Alu 29 306 -6 892 255 52 15 chr9 14377491 14377817 -127893627 - MER113 DNA MER1_type? -178 343 6 211 241 76 25 chr9 14377946 14378025 -127893419 - MIR SINE MIR -8 254 172 2285 90 7 3 chr9 14379131 14379431 -127892013 - AluY SINE Alu -10 301 1 459 0 0 0 chr9 14379547 14379598 -127891846 + (TG)n Simple_repeat Simple_repeat 2 52 0 1497 140 93 50 chr9 14380046 14380324 -127891120 - AluSq SINE Alu -16 297 8 1166 248 129 7 chr9 14380351 14380754 -127890690 - MLT1C LTR MaLR -6 461 10 258 325 163 6 chr9 14381086 14381246 -127890198 - MIR3 SINE MIR 0 208 24 21 36 0 0 chr9 14382234 14382262 -127889182 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 14383750 14383774 -127887670 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 14384421 14384443 -127887001 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 14385027 14385048 -127886396 + AT_rich Low_complexity Low_complexity 1 21 0 889 170 144 5 chr9 14387054 14387248 -127884196 + MER58A DNA MER1_type 1 221 -3 434 254 66 57 chr9 14388362 14388590 -127882854 + MIR SINE MIR 20 249 -13 21 0 0 0 chr9 14390530 14390551 -127880893 + AT_rich Low_complexity Low_complexity 1 21 0 2040 117 4 4 chr9 14390561 14390882 -127880562 + AluSg SINE Alu 1 321 0 2274 62 3 24 chr9 14391624 14391915 -127879529 + AluY SINE Alu 20 304 -7 304 277 184 15 chr9 14392167 14392373 -127879071 + MIR SINE MIR 14 254 -8 1385 127 142 70 chr9 14392875 14393191 -127878253 - MER44D DNA MER2_type 0 609 1 2184 65 0 0 chr9 14393225 14393486 -127877958 + AluY SINE Alu 35 295 -16 2371 91 3 0 chr9 14393785 14394083 -127877361 - AluSp SINE Alu -12 301 3 1576 162 103 4 chr9 14395054 14395326 -127876118 - AluJb SINE Alu -13 299 1 211 282 42 42 chr9 14395875 14395946 -127875498 - MIR SINE MIR -172 90 20 384 324 39 103 chr9 14397126 14397456 -127873988 + L2 LINE L2 2945 3253 -19 2178 119 14 0 chr9 14398465 14398758 -127872686 - AluSx SINE Alu -15 297 1 22 35 0 0 chr9 14399386 14399415 -127872029 + AT_rich Low_complexity Low_complexity 1 29 0 320 208 52 26 chr9 14400700 14400777 -127870667 - MIR SINE MIR -92 170 92 317 321 109 7 chr9 14400859 14400996 -127870448 - MIR3 SINE MIR -39 169 19 206 378 0 12 chr9 14403766 14403848 -127867596 + MIR SINE MIR 61 141 -121 1427 219 104 9 chr9 14404079 14404568 -127866876 + MLT1F LTR MaLR 5 534 -8 471 336 76 53 chr9 14404570 14405005 -127866439 + MLT1K LTR MaLR 136 580 -8 2227 102 0 0 chr9 14405122 14405459 -127865985 + AluSx SINE Alu 1 312 0 612 146 184 0 chr9 14405689 14405792 -127865652 - FLAM_A SINE Alu -11 122 1 23 33 0 0 chr9 14406185 14406215 -127865229 + AT_rich Low_complexity Low_complexity 1 30 0 231 222 22 0 chr9 14406860 14406905 -127864539 + MIR SINE MIR 30 75 -133 295 252 99 36 chr9 14407294 14407405 -127864039 - MIR SINE MIR -41 221 104 838 173 78 6 chr9 14407640 14407819 -127863625 + LTR47A LTR ERVL 261 452 0 272 256 122 0 chr9 14408184 14408274 -127863170 - MIR SINE MIR -65 197 97 586 245 48 48 chr9 14408640 14408828 -127862616 - MIR SINE MIR -73 189 2 203 318 30 15 chr9 14408848 14408914 -127862530 - L2 LINE L2 -5 3267 3201 774 215 62 23 chr9 14409522 14409699 -127861745 - MER5A DNA MER1_type 0 189 6 217 178 56 22 chr9 14409930 14410020 -127861424 + (TTATA)n Simple_repeat Simple_repeat 4 96 0 243 301 0 27 chr9 14411182 14411255 -127860189 + L2 LINE L2 3238 3308 -5 2297 92 13 3 chr9 14412262 14412567 -127858877 - AluSc SINE Alu -1 308 1 29 28 0 0 chr9 14412840 14412876 -127858568 + AT_rich Low_complexity Low_complexity 1 36 0 314 165 82 57 chr9 14414721 14414841 -127856603 + MLT1F LTR MaLR 261 413 -175 283 127 175 0 chr9 14414863 14414926 -127856518 + MLT1F LTR MaLR 517 590 0 279 215 152 0 chr9 14415579 14415658 -127855786 - MIR SINE MIR -62 146 56 23 0 0 0 chr9 14416226 14416249 -127855195 + AT_rich Low_complexity Low_complexity 1 23 0 291 54 0 0 chr9 14416324 14416361 -127855083 + (TA)n Simple_repeat Simple_repeat 1 37 0 219 150 0 0 chr9 14416598 14416638 -127854806 + (TA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr9 14416927 14416949 -127854495 + AT_rich Low_complexity Low_complexity 1 22 0 334 86 224 0 chr9 14417252 14417310 -127854134 + MADE1 DNA Mariner 10 80 0 246 333 106 72 chr9 14417312 14417492 -127853952 - MIR3 SINE MIR -3 205 20 24 77 0 0 chr9 14417673 14417725 -127853719 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 14418340 14418362 -127853082 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 25 51 0 0 chr9 14420217 14420256 -127851188 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr9 14422559 14422601 -127848843 + AT_rich Low_complexity Low_complexity 1 42 0 293 337 41 0 chr9 14425725 14425823 -127845621 + L2 LINE L2 3171 3272 0 201 250 0 0 chr9 14425922 14425962 -127845482 + (CA)n Simple_repeat Simple_repeat 1 40 0 242 100 0 0 chr9 14426608 14426648 -127844796 + L1PA3 LINE L1 6113 6152 -3 21 0 0 0 chr9 14426648 14426669 -127844775 + AT_rich Low_complexity Low_complexity 1 21 0 3798 191 73 12 chr9 14426912 14427343 -127844101 + L1MB3 LINE L1 5033 5436 -747 189 0 0 0 chr9 14427343 14427364 -127844080 + (CA)n Simple_repeat Simple_repeat 2 22 0 3798 191 73 12 chr9 14427364 14428022 -127843422 + L1MB3 LINE L1 5436 6175 -8 505 299 0 51 chr9 14428433 14428493 -127842951 + L2 LINE L2 2788 2849 -465 2434 111 28 17 chr9 14428493 14428853 -127842591 + THE1B LTR MaLR 1 364 0 505 299 0 51 chr9 14428853 14428989 -127842455 + L2 LINE L2 2849 2974 -340 758 149 5 155 chr9 14429637 14429831 -127841613 - FRAM SINE Alu -4 172 8 218 217 0 0 chr9 14430000 14430046 -127841398 + A-rich Low_complexity Low_complexity 1 46 0 609 273 24 18 chr9 14430123 14430288 -127841156 - MIR SINE MIR 0 262 97 639 218 77 101 chr9 14430604 14430852 -127840592 + MIR SINE MIR 21 262 0 213 189 0 0 chr9 14430857 14430894 -127840550 + (TGG)n Simple_repeat Simple_repeat 1 37 0 427 278 67 103 chr9 14431014 14431138 -127840306 + L1MC4a LINE L1 5440 5567 -2241 2174 115 0 3 chr9 14431138 14431425 -127840019 + AluSc SINE Alu 1 286 -23 427 278 67 103 chr9 14431425 14431807 -127839637 + L1MC4a LINE L1 5567 5928 -1880 456 241 161 12 chr9 14432317 14432479 -127838965 - MIR SINE MIR -25 237 52 2182 116 33 28 chr9 14432519 14432881 -127838563 - THE1B LTR MaLR 0 364 1 27 0 0 0 chr9 14433242 14433269 -127838175 + AT_rich Low_complexity Low_complexity 1 27 0 219 36 0 0 chr9 14433826 14433854 -127837590 + (CA)n Simple_repeat Simple_repeat 2 29 0 309 281 215 61 chr9 14435323 14435551 -127835893 - L3 LINE CR1 -22 1555 1293 228 405 0 0 chr9 14436271 14436350 -127835094 - MIR SINE MIR -182 80 2 213 274 129 0 chr9 14436428 14436490 -127834954 + MIR SINE MIR 45 114 -148 1887 139 49 9 chr9 14436904 14437032 -127834412 - MER2 DNA MER2_type -7 338 217 360 0 0 0 chr9 14437032 14437072 -127834372 + (TA)n Simple_repeat Simple_repeat 1 40 0 1887 139 49 9 chr9 14437072 14437267 -127834177 - MER2 DNA MER2_type -128 217 2 2169 111 0 10 chr9 14437491 14437788 -127833656 + AluSq SINE Alu 3 296 -17 1787 184 3 3 chr9 14438188 14438487 -127832957 + AluJb SINE Alu 6 304 -8 36 23 0 0 chr9 14438662 14438705 -127832739 + AT_rich Low_complexity Low_complexity 1 43 0 308 281 0 0 chr9 14439647 14439711 -127831733 - L2 LINE L2 0 3272 3209 242 65 65 22 chr9 14443890 14443936 -127827508 - MARNA DNA Mariner -342 244 197 23 101 0 0 chr9 14444786 14444865 -127826579 + AT_rich Low_complexity Low_complexity 1 79 0 279 351 81 9 chr9 14445202 14445313 -127826131 - L2 LINE L2 0 3313 3195 971 349 37 44 chr9 14445415 14446117 -127825327 + L2 LINE L2 2261 2957 -357 22 35 0 0 chr9 14446210 14446239 -127825205 + AT_rich Low_complexity Low_complexity 1 29 0 424 301 75 20 chr9 14447213 14447412 -127824032 + MIR SINE MIR 48 257 -5 202 385 55 9 chr9 14447608 14447717 -127823727 + MIR SINE MIR 36 149 -113 2337 84 0 13 chr9 14448578 14448888 -127822556 - AluSq SINE Alu -7 306 1 2305 156 58 2 chr9 14449072 14449503 -127821941 + L1MB3 LINE L1 5727 6181 -2 326 231 22 0 chr9 14449504 14449595 -127821849 + L1M4 LINE L1 3849 3941 -2205 1939 127 7 10 chr9 14449622 14449922 -127821522 + AluSq SINE Alu 1 299 -14 216 234 0 0 chr9 14450016 14450063 -127821381 + L2 LINE L2 2689 2735 -579 366 216 142 27 chr9 14450651 14450799 -127820645 - MER103 DNA DNA -1 165 1 255 233 14 27 chr9 14453633 14453706 -127817738 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 532 290 126 13 chr9 14453846 14454077 -127817367 + MIR SINE MIR 3 259 -3 708 79 89 0 chr9 14454189 14454290 -127817154 - AluY SINE Alu -186 125 16 1402 85 0 11 chr9 14454290 14454479 -127816965 + AluY SINE Alu 114 300 -11 556 254 130 14 chr9 14454925 14455295 -127816149 - L1M4 LINE L1 -881 5265 4853 28 29 0 0 chr9 14457580 14457615 -127813829 + AT_rich Low_complexity Low_complexity 1 35 0 457 234 49 6 chr9 14458758 14458938 -127812506 + L1M4 LINE L1 5272 5458 -712 233 393 51 8 chr9 14460972 14461089 -127810355 - MIR3 SINE MIR -28 180 59 26 0 0 0 chr9 14461935 14461961 -127809483 + AT_rich Low_complexity Low_complexity 1 26 0 223 212 35 35 chr9 14462613 14462698 -127808746 + GA-rich Low_complexity Low_complexity 1 85 0 26 50 0 0 chr9 14462869 14462909 -127808535 + AT_rich Low_complexity Low_complexity 1 40 0 1840 123 14 14 chr9 14464438 14464715 -127806729 + AluSx SINE Alu 1 277 -35 234 0 0 0 chr9 14464715 14464741 -127806703 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 263 211 19 0 chr9 14467096 14467148 -127804296 + MIR SINE MIR 156 208 -54 293 271 12 35 chr9 14467930 14468015 -127803429 + MIR SINE MIR 111 193 -69 550 279 78 11 chr9 14468043 14468222 -127803222 - MIR SINE MIR -57 205 15 26 0 0 0 chr9 14468561 14468587 -127802857 + AT_rich Low_complexity Low_complexity 1 26 0 320 278 108 41 chr9 14468837 14469031 -127802413 + L1MC4a LINE L1 5866 6072 -1736 23 33 0 0 chr9 14469095 14469125 -127802319 + AT_rich Low_complexity Low_complexity 1 30 0 265 277 9 60 chr9 14470023 14470129 -127801315 - MIR3 SINE MIR -4 204 104 3052 55 15 7 chr9 14470525 14470928 -127800516 + L1PA8 LINE L1 5764 6169 -3 1796 160 0 0 chr9 14471208 14471513 -127799931 + AluJb SINE Alu 1 305 0 224 167 222 14 chr9 14471525 14471597 -127799847 + MIR SINE MIR 174 260 -2 22 0 0 0 chr9 14473362 14473384 -127798060 + AT_rich Low_complexity Low_complexity 1 22 0 293 176 0 0 chr9 14473443 14473494 -127797950 + L1MA5 LINE L1 6024 6074 -226 186 43 0 0 chr9 14473494 14473517 -127797927 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 400 231 135 0 chr9 14473522 14473626 -127797818 - FLAM_A SINE Alu -15 118 1 6110 139 36 10 chr9 14473678 14474932 -127796512 - L1MA4 LINE L1 -7 6497 5202 423 0 0 0 chr9 14474940 14474987 -127796457 + (TG)n Simple_repeat Simple_repeat 2 48 0 8414 220 43 67 chr9 14474999 14477536 -127793908 - L1MA4 LINE L1 -1396 4954 2478 1754 269 17 52 chr9 14477554 14478379 -127793065 - L1MA4 LINE L1 -4466 1885 1094 537 364 47 32 chr9 14478728 14479222 -127792222 - L1MA4 LINE L1 -5780 501 1 1197 96 0 30 chr9 14479225 14479422 -127792022 + L1MA5 LINE L1 6108 6298 -2 414 0 0 0 chr9 14479979 14480025 -127791419 + (CA)n Simple_repeat Simple_repeat 1 46 0 192 77 0 0 chr9 14480025 14480051 -127791393 + (GA)n Simple_repeat Simple_repeat 1 26 0 815 159 8 0 chr9 14480556 14480682 -127790762 + AluSq/x SINE Alu 1 127 -186 23 33 0 0 chr9 14480903 14480933 -127790511 + AT_rich Low_complexity Low_complexity 1 30 0 222 234 33 174 chr9 14482527 14482638 -127788806 + MER5B DNA MER1_type 18 94 -84 248 290 21 65 chr9 14482530 14482623 -127788821 - MER5A DNA MER1_type -22 167 79 1445 203 17 30 chr9 14482638 14482805 -127788639 - AluJo SINE Alu -11 301 138 2263 77 31 0 chr9 14482805 14483092 -127788352 - AluSc SINE Alu -13 296 1 1445 203 17 30 chr9 14483092 14483225 -127788219 - AluJo SINE Alu -174 138 5 222 234 33 174 chr9 14483225 14483297 -127788147 + MER5B DNA MER1_type 94 175 -3 259 344 59 29 chr9 14483490 14483763 -127787681 + L2 LINE L2 2691 2971 -343 1776 169 0 25 chr9 14484411 14484725 -127786719 + AluJb SINE Alu 1 306 -6 185 224 19 19 chr9 14484832 14484939 -127786505 + (TA)n Simple_repeat Simple_repeat 2 108 0 326 301 62 70 chr9 14486008 14486425 -127785019 + L1M3c LINE L1 1195 1529 -1042 582 154 137 0 chr9 14488941 14489058 -127782386 + FLAM_C SINE Alu 1 133 0 3322 160 7 3 chr9 14490275 14490845 -127780599 + L1MB8 LINE L1 5598 6169 -9 2005 143 55 18 chr9 14491213 14491598 -127779846 - L1MB2 LINE L1 -1 6170 5772 237 233 0 0 chr9 14491598 14491688 -127779756 + (TA)n Simple_repeat Simple_repeat 2 91 0 483 172 86 0 chr9 14491692 14491785 -127779659 - L1MB2 LINE L1 -390 5793 5693 239 173 39 19 chr9 14491952 14492004 -127779440 + MER103 DNA DNA 17 69 -97 1065 177 5 30 chr9 14492006 14492204 -127779240 - AluJo SINE Alu 0 312 120 206 32 32 0 chr9 14493596 14493627 -127777817 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 221 250 79 0 chr9 14494015 14494091 -127777353 - MIR SINE MIR -6 256 175 598 197 153 33 chr9 14496633 14496816 -127774628 + MER3 DNA MER1_type 5 209 0 23 33 0 0 chr9 14497890 14497920 -127773524 + AT_rich Low_complexity Low_complexity 1 30 0 294 200 0 50 chr9 14499069 14499129 -127772315 - MER2 DNA MER2_type 0 345 289 1196 170 24 15 chr9 14499310 14499516 -127771928 - MER2 DNA MER2_type -136 209 2 1737 168 7 10 chr9 14500061 14500353 -127771091 + AluJo SINE Alu 1 291 -21 344 289 7 47 chr9 14500988 14501137 -127770307 + L1ME LINE L1 5599 5741 -380 857 117 64 18 chr9 14501451 14501622 -127769822 + Tigger3(Golem) DNA MER2_type 2434 2612 -417 2246 136 53 5 chr9 14501734 14502110 -127769334 + Tigger3(Golem) DNA MER2_type 2595 2988 -41 692 250 96 17 chr9 14502109 14502349 -127769095 + MER77 LTR ERV1 342 600 -5 * 226 204 20 122 chr9 14502417 14502515 -127768929 + MER21A LTR ERV1 680 767 -164 577 311 152 35 chr9 14502734 14503161 -127768283 + L2 LINE L2 2828 3304 -9 348 285 65 8 chr9 14505548 14505671 -127765773 - MLT1E LTR MaLR -457 136 7 312 293 58 16 chr9 14505674 14505865 -127765579 + L1M2 LINE L1 2285 2483 -4366 284 48 24 0 chr9 14505875 14505917 -127765527 + (CA)n Simple_repeat Simple_repeat 1 43 0 232 310 32 25 chr9 14506095 14506253 -127765191 + L1ME1 LINE L1 1892 2050 -4346 * 2386 247 90 15 chr9 14506248 14507023 -127764421 + L1ME1 LINE L1 5305 6144 -91 963 264 214 48 chr9 14507086 14507595 -127763849 + L1ME3 LINE L1 2982 3405 -2810 1781 151 40 4 chr9 14507595 14507873 -127763571 + AluSx SINE Alu 1 288 -24 963 264 214 48 chr9 14507873 14508611 -127762833 + L1ME3 LINE L1 3405 4436 -1779 1948 264 62 39 chr9 14508654 14509931 -127761513 + L1ME3 LINE L1 4873 6184 -47 24 53 0 0 chr9 14510342 14510380 -127761064 + AT_rich Low_complexity Low_complexity 1 38 0 281 278 122 0 chr9 14511683 14511773 -127759671 - L2 LINE L2 -1 3312 3212 480 117 0 0 chr9 14512485 14512562 -127758882 + (TG)n Simple_repeat Simple_repeat 2 78 0 2360 80 6 16 chr9 14512579 14512892 -127758552 - AluSp SINE Alu -3 310 1 3718 200 109 29 chr9 14513382 14513472 -127757972 + Charlie1 DNA MER1_type 1584 1665 -1096 1809 132 20 16 chr9 14513472 14513775 -127757669 + AluJb SINE Alu 1 304 -8 3718 200 109 29 chr9 14513775 14514327 -127757117 + Charlie1 DNA MER1_type 1665 2171 -590 2949 162 32 50 chr9 14514327 14514950 -127756494 + LTR9 LTR ERV1 1 612 0 3718 200 109 29 chr9 14514950 14515386 -127756058 + Charlie1 DNA MER1_type 2171 2750 -11 523 235 38 8 chr9 14515657 14515789 -127755655 + MIR SINE MIR 102 237 -25 207 0 0 0 chr9 14516892 14516915 -127754529 + (A)n Simple_repeat Simple_repeat 1 23 0 241 337 92 31 chr9 14516915 14517078 -127754366 + MIR SINE MIR 20 192 -70 1854 115 0 11 chr9 14518527 14518796 -127752648 - AluSx SINE Alu -2 310 45 878 238 9 48 chr9 14519081 14519308 -127752136 - MER20 DNA MER1_type 0 219 2 31 0 0 0 chr9 14521431 14521462 -127749982 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr9 14521520 14521569 -127749875 + AT_rich Low_complexity Low_complexity 1 49 0 247 270 270 9 chr9 14521765 14521876 -127749568 + MIR3 SINE MIR 42 181 -27 2040 128 20 0 chr9 14522478 14522775 -127748669 + AluSx SINE Alu 2 304 -8 2328 87 0 3 chr9 14524256 14524556 -127746888 + AluSx SINE Alu 1 299 -13 2103 126 0 28 chr9 14525001 14525318 -127746126 + AluSx SINE Alu 5 312 0 306 0 0 0 chr9 14525416 14525450 -127745994 + (CA)n Simple_repeat Simple_repeat 1 34 0 190 207 17 52 chr9 14527072 14527130 -127744314 - L2 LINE L2 -81 3232 3177 2138 135 0 0 chr9 14527158 14527469 -127743975 + AluSx SINE Alu 1 311 -1 184 291 51 13 chr9 14528200 14528279 -127743165 + MIR SINE MIR 48 129 -133 2263 83 0 13 chr9 14528597 14528897 -127742547 + AluSc SINE Alu 1 296 -13 1091 126 126 6 chr9 14528900 14529082 -127742362 + AluSx SINE Alu 1 204 -108 280 296 233 0 chr9 14529159 14529311 -127742133 + MIR SINE MIR 19 203 -59 698 255 142 9 chr9 14530154 14530366 -127741078 - MIR SINE MIR -21 241 2 1026 118 14 91 chr9 14530771 14530901 -127740543 + Tigger7 DNA MER2_type 2288 2396 -95 14144 140 29 6 chr9 14530901 14533265 -127738179 - Tigger1 DNA MER2_type 0 2418 1 1026 118 14 91 chr9 14533265 14533355 -127738089 + Tigger7 DNA MER2_type 2396 2491 0 344 297 31 23 chr9 14533628 14533756 -127737688 - MIR SINE MIR -120 142 14 802 119 108 34 chr9 14534053 14534229 -127737215 + MER53 DNA DNA 1 189 0 441 81 0 0 chr9 14535271 14535333 -127736111 + AluSc SINE Alu 156 217 -92 267 170 0 19 chr9 14535354 14535407 -127736037 + MER53 DNA DNA 138 189 0 324 65 0 0 chr9 14535539 14535585 -127735859 - AluSc SINE Alu -80 219 174 408 149 11 11 chr9 14535585 14535672 -127735772 + AluS SINE Alu 220 306 -3 234 343 87 48 chr9 14535856 14536144 -127735300 - L2 LINE L2 -183 3089 2743 2047 120 3 26 chr9 14536144 14536452 -127734992 - AluSx SINE Alu -11 301 1 234 343 87 48 chr9 14536452 14536603 -127734841 - L2 LINE L2 -529 2743 2599 1007 228 65 54 chr9 14536830 14537216 -127734228 + MLT1B LTR MaLR 1 390 0 1501 177 3 57 chr9 14538071 14538388 -127733056 + AluJo SINE Alu 11 310 -2 1559 159 55 14 chr9 14538492 14538781 -127732663 + AluJo SINE Alu 1 301 -11 418 280 58 40 chr9 14538876 14539101 -127732343 + L1MDa LINE L1 2351 2579 -3961 30 0 0 0 chr9 14539150 14539180 -127732264 + AT_rich Low_complexity Low_complexity 1 30 0 607 237 65 38 chr9 14539402 14539588 -127731856 + L1MC5 LINE L1 7727 7917 -44 198 307 243 21 chr9 14540728 14540868 -127730576 - MIR3 SINE MIR -17 191 21 24 0 0 0 chr9 14540961 14540985 -127730459 + AT_rich Low_complexity Low_complexity 1 24 0 2010 124 3 0 chr9 14541612 14541903 -127729541 + AluSp SINE Alu 14 305 -8 297 292 124 7 chr9 14543628 14543765 -127727679 - MIR SINE MIR -48 214 62 23 0 0 0 chr9 14544459 14544482 -127726962 + AT_rich Low_complexity Low_complexity 1 23 0 351 172 103 9 chr9 14544660 14544776 -127726668 + MER69 DNA AcHobo 2400 2526 0 196 185 11 174 chr9 14545653 14545745 -127725699 + L2 LINE L2 3194 3270 -43 951 207 43 55 chr9 14546741 14547069 -127724375 + MER33 DNA MER1_type 1 324 0 21 36 0 0 chr9 14547431 14547459 -127723985 + AT_rich Low_complexity Low_complexity 1 28 0 416 209 49 80 chr9 14547628 14547791 -127723653 + MER34 LTR ERV1 3 160 -382 237 200 88 25 chr9 14547937 14548017 -127723427 + MER34 LTR ERV1 458 542 0 1225 208 47 29 chr9 14548090 14548470 -127722974 + L1ME1 LINE L1 5776 6162 -4 864 130 0 36 chr9 14548887 14549025 -127722419 + AluSq/x SINE Alu 1 133 -179 1986 155 42 11 chr9 14549201 14549555 -127721889 + MLT1A1 LTR MaLR 1 365 0 798 130 62 0 chr9 14549928 14550090 -127721354 - Charlie5 DNA MER1_type 0 2624 2453 21 82 0 0 chr9 14550489 14550538 -127720906 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr9 14550830 14550854 -127720590 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 14550923 14550958 -127720486 + AT_rich Low_complexity Low_complexity 1 35 0 1909 148 89 3 chr9 14551484 14551843 -127719601 + MLT1B LTR MaLR 1 390 0 813 140 7 0 chr9 14551843 14551979 -127719465 + MLT1B-int LTR MaLR 1 137 -1234 205 306 0 20 chr9 14553559 14553657 -127717787 + GA-rich Low_complexity Low_complexity 2 97 0 2130 110 0 0 chr9 14553857 14554175 -127717269 - AluSx SINE Alu 0 312 1 246 62 0 0 chr9 14555873 14555905 -127715539 + (CCCCCA)n Simple_repeat Simple_repeat 1 32 0 29 28 0 0 chr9 14555935 14555971 -127715473 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 14556323 14556345 -127715099 + GC_rich Low_complexity Low_complexity 1 22 0 893 153 16 26 chr9 14556440 14556629 -127714815 - MER53 DNA DNA -1 188 2 420 217 114 39 chr9 14557231 14557411 -127714033 - MER69 DNA AcHobo -19 2507 1 300 308 220 23 chr9 14557417 14557722 -127713722 + L2 LINE L2 2061 2425 -889 296 340 99 21 chr9 14557807 14557948 -127713496 + L2 LINE L2 3096 3247 -25 475 328 0 16 chr9 14560210 14560399 -127711045 + MLT1L LTR MaLR 426 611 -4 235 312 46 0 chr9 14560737 14560846 -127710598 - HAL1 LINE L1 -1641 866 753 256 254 0 14 chr9 14560992 14561063 -127710381 + (TG)n Simple_repeat Simple_repeat 1 70 0 388 165 165 0 chr9 14561222 14561325 -127710119 - MER5C DNA MER1_type 0 324 205 394 212 221 0 chr9 14561459 14561572 -127709872 + MER5A DNA MER1_type 41 178 -11 755 303 77 15 chr9 14561618 14561945 -127709499 + L2 LINE L2 2944 3290 -23 605 227 13 7 chr9 14562402 14562552 -127708892 - L1ME2 LINE L1 -14 6150 6000 913 164 57 53 chr9 14562554 14562798 -127708646 - MER96B DNA MER1_type? -170 247 3 780 256 48 37 chr9 14562814 14563083 -127708361 - MLT1G LTR MaLR -294 296 25 417 346 32 5 chr9 14564455 14564643 -127706801 - LTR16A LTR ERVL -52 398 206 1999 217 113 21 chr9 14564817 14565481 -127705963 + MER50 LTR ERV1 10 734 0 407 317 136 5 chr9 14565996 14566195 -127705249 + MIR SINE MIR 19 243 -19 207 204 0 0 chr9 14566208 14566257 -127705187 + (ATG)n Simple_repeat Simple_repeat 3 51 0 1504 179 0 75 chr9 14566283 14566591 -127704853 - AluJb SINE Alu -27 285 1 271 371 9 0 chr9 14566831 14566936 -127704508 - MIR SINE MIR -139 123 18 201 219 24 0 chr9 14567035 14567076 -127704368 - MER5B DNA MER1_type -136 42 1 21 36 0 0 chr9 14567114 14567142 -127704302 + AT_rich Low_complexity Low_complexity 1 28 0 565 216 0 0 chr9 14567262 14567373 -127704071 + FLAM_A SINE Alu 24 134 -8 440 376 78 9 chr9 14567472 14567690 -127703754 - L1MC4 LINE L1 -17 8025 7793 2303 77 0 35 chr9 14567723 14568036 -127703408 + AluY SINE Alu 1 302 -9 252 146 0 0 chr9 14568041 14568082 -127703362 - AluJ/FLAM SINE Alu -218 84 44 1072 259 52 118 chr9 14568175 14569041 -127702403 - L1MC4 LINE L1 -370 7672 6876 1761 184 16 3 chr9 14569041 14569346 -127702098 - AluJb SINE Alu -3 309 1 1072 259 52 118 chr9 14569346 14569456 -127701988 - L1MC4 LINE L1 -1166 6876 6760 749 334 71 56 chr9 14569950 14570804 -127700640 + L1MEc LINE L1 894 1823 -753 2072 136 0 13 chr9 14571017 14571319 -127700125 + AluSx SINE Alu 9 306 -6 1047 167 46 0 chr9 14571345 14571519 -127699925 + FRAM SINE Alu 1 176 0 317 270 26 37 chr9 14571558 14571747 -127699697 + L1MEc LINE L1 2387 2573 -3642 24 0 0 0 chr9 14571882 14571906 -127699538 + AT_rich Low_complexity Low_complexity 1 24 0 1323 275 102 8 chr9 14572161 14572634 -127698810 - MLT1H LTR MaLR -27 522 6 2523 66 0 0 chr9 14572659 14572960 -127698484 + AluY SINE Alu 1 301 -10 345 243 200 22 chr9 14572967 14573152 -127698292 + L1MEc LINE L1 3033 3250 -2965 383 271 69 24 chr9 14573182 14573473 -127697971 + L1MEc LINE L1 3247 3550 -2665 2088 175 44 14 chr9 14573683 14574118 -127697326 - LOR1b LTR ERV1 -13 448 1 462 297 53 29 chr9 14574169 14574623 -127696821 + L1MEc LINE L1 3828 4292 -1923 629 240 11 66 chr9 14574649 14574936 -127696508 - LTR37B LTR ERV1 0 468 198 446 250 42 7 chr9 14575053 14575197 -127696247 - LTR37B LTR ERV1 -314 154 6 334 217 62 155 chr9 14575205 14575347 -127696097 + L1MEc LINE L1 4320 4429 -1786 1543 184 16 48 chr9 14575347 14575657 -127695787 + AluJo SINE Alu 1 300 -12 334 217 62 155 chr9 14575657 14575772 -127695672 + L1MEc LINE L1 4429 4553 -1662 1496 202 22 0 chr9 14576195 14576472 -127694972 - AluJo SINE Alu -28 284 2 541 182 56 56 chr9 14576523 14576666 -127694778 + FLAM_C SINE Alu 1 143 0 206 303 45 0 chr9 14576718 14576784 -127694660 - MIR SINE MIR 0 262 194 2177 121 0 7 chr9 14577089 14577387 -127694057 + AluSx SINE Alu 3 298 -14 32743 39 4 10 chr9 14578100 14583209 -127688235 - L1PA4 LINE L1 0 6155 1081 559 102 0 0 chr9 14583177 14583289 -127688155 - L1P3 LINE L1 -6066 395 10 * 2229 85 7 3 chr9 14583422 14583715 -127687729 - AluY SINE Alu -17 294 1 443 320 164 3 chr9 14583778 14584090 -127687354 + LTR33A LTR ERVL 142 503 -20 249 283 232 0 chr9 14584206 14584305 -127687139 - L2 LINE L2 0 3313 3192 558 229 0 0 chr9 14584313 14584422 -127687022 + MER81 DNA DNA 1 109 -5 417 292 64 58 chr9 14584465 14584636 -127686808 - L2 LINE L2 -164 3149 2978 489 145 0 0 chr9 14584733 14584802 -127686642 - AluS SINE Alu -239 70 2 1425 114 0 30 chr9 14584805 14585007 -127686437 + AluSc SINE Alu 96 291 -18 351 263 73 15 chr9 14585051 14585188 -127686256 - LTR33 LTR ERVL -135 386 242 1847 152 158 13 chr9 14585396 14585770 -127685674 - MSTA LTR MaLR 0 428 1 184 333 81 0 chr9 14586123 14586222 -127685222 - MIR SINE MIR -75 187 81 483 210 5 15 chr9 14586603 14586808 -127684636 + CT-rich Low_complexity Low_complexity 1 203 0 2172 110 0 0 chr9 14586808 14587089 -127684355 - AluSq SINE Alu -32 281 1 2099 149 0 0 chr9 14587990 14588285 -127683159 - AluSx SINE Alu -13 299 5 24 0 0 0 chr9 14588730 14588754 -127682690 + AT_rich Low_complexity Low_complexity 1 24 0 269 200 86 14 chr9 14588818 14588888 -127682556 + MLT1L LTR MaLR 35 109 -506 1285 231 86 5 chr9 14588921 14589306 -127682138 + LTR40c LTR ERVL 44 459 -6 431 234 52 120 chr9 14589333 14589641 -127681803 + MLT1J LTR MaLR 124 410 -101 1674 184 3 20 chr9 14589704 14590008 -127681436 - AluJo SINE Alu -13 299 1 1222 211 0 0 chr9 14590067 14590275 -127681169 - AluJb SINE Alu -22 290 83 1797 180 7 10 chr9 14590324 14590624 -127680820 - AluJo SINE Alu -13 299 1 326 258 43 0 chr9 14591814 14591907 -127679537 - MLT1G1 LTR MaLR -498 97 1 2366 99 7 0 chr9 14592593 14592896 -127678548 + AluSg SINE Alu 1 305 -5 393 282 92 45 chr9 14593001 14593246 -127678198 + HAL1 LINE L1 3 317 -2190 324 0 0 0 chr9 14593280 14593316 -127678128 + (TG)n Simple_repeat Simple_repeat 2 37 0 1062 84 35 0 chr9 14593320 14593462 -127677982 - AluSg/x SINE Alu -25 287 141 341 120 0 0 chr9 14593462 14593512 -127677932 - Alu SINE Alu -250 50 1 507 302 83 36 chr9 14593516 14593768 -127677676 + HAL1 LINE L1 349 612 -1895 1560 268 40 21 chr9 14593967 14594389 -127677055 - LTR16A LTR ERVL -2 448 19 250 225 155 14 chr9 14594391 14594462 -127676982 + HAL1 LINE L1 738 818 -1689 650 305 24 20 chr9 14594503 14594720 -127676724 - MLT1I LTR MaLR -121 288 91 340 301 58 46 chr9 14594745 14594918 -127676526 - MLT1H1 LTR MaLR -29 526 352 1483 273 110 5 chr9 14594966 14595595 -127675849 + HAL1 LINE L1 1116 1810 -697 454 224 97 90 chr9 14595726 14595967 -127675477 + HAL1 LINE L1 2104 2349 -158 2673 94 11 0 chr9 14595967 14596327 -127675117 - THE1B LTR MaLR 0 364 1 454 224 97 90 chr9 14596327 14596353 -127675091 + HAL1 LINE L1 2349 2373 -134 337 200 0 0 chr9 14596354 14596419 -127675025 + MLT1K LTR MaLR 488 552 -36 182 206 0 132 chr9 14596514 14596582 -127674862 - MER5A DNA MER1_type -114 75 17 * 203 330 0 0 chr9 14596521 14596583 -127674861 + MER5A DNA MER1_type 116 188 -1 2103 254 35 15 chr9 14597251 14597794 -127673650 - MLT1H1 LTR MaLR -1 554 1 1301 195 55 12 chr9 14597895 14598152 -127673292 + AluJb SINE Alu 9 276 -36 21 36 0 0 chr9 14600244 14600272 -127671172 + AT_rich Low_complexity Low_complexity 1 28 0 238 167 17 17 chr9 14600915 14600975 -127670469 + (TA)n Simple_repeat Simple_repeat 1 60 0 384 273 230 25 chr9 14601143 14601166 -127670278 + MIR SINE MIR 4 21 -241 1384 208 67 18 chr9 14601166 14601493 -127669951 - MER2 DNA MER2_type 0 344 2 384 273 230 25 chr9 14601493 14601630 -127669814 + MIR SINE MIR 21 197 -65 500 282 141 46 chr9 14601636 14601877 -127669567 - LTR41 LTR ERVL -170 603 340 662 0 13 0 chr9 14601887 14601965 -127669479 + (TATTG)n Simple_repeat Simple_repeat 3 81 0 918 190 40 0 chr9 14601976 14602150 -127669294 - LTR41 LTR ERVL -590 183 3 290 222 0 0 chr9 14602157 14602211 -127669233 + MIR SINE MIR 203 256 -6 456 287 127 74 chr9 14602263 14602507 -127668937 - L1ME4a LINE L1 -210 5911 5681 783 157 0 0 chr9 14602507 14602628 -127668816 - FLAM_C SINE Alu -12 121 1 456 287 127 74 chr9 14602628 14602909 -127668535 - L1ME4a LINE L1 -440 5681 5358 8843 183 29 22 chr9 14603257 14603842 -127667602 + L1 LINE L1 2710 3289 -2857 1717 164 11 7 chr9 14603842 14604122 -127667322 + AluJb SINE Alu 1 281 -31 8843 183 29 22 chr9 14604122 14605462 -127665982 + L1 LINE L1 3289 4649 -1497 1143 163 15 0 chr9 14605463 14605665 -127665779 - L1 LINE L1 -1268 4878 4674 319 203 85 0 chr9 14605665 14605783 -127665661 - L1ME4a LINE L1 -19 6102 5975 21 36 0 0 chr9 14605875 14605903 -127665541 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 14605973 14606003 -127665441 + AT_rich Low_complexity Low_complexity 1 30 0 2119 138 0 0 chr9 14606007 14606298 -127665146 - AluSx SINE Alu -21 291 1 545 311 42 0 chr9 14606345 14606538 -127664906 - L1ME LINE L1 -436 5685 5485 413 310 59 31 chr9 14606699 14606954 -127664490 - L1 LINE L1 -1499 4647 4386 212 261 171 57 chr9 14607044 14607132 -127664312 + MIR SINE MIR 1 98 -164 964 240 257 7 chr9 14607140 14607552 -127663892 + LTR33 LTR ERVL 3 517 -4 1895 136 13 19 chr9 14608693 14609002 -127662442 + AluSx SINE Alu 1 307 -5 477 135 0 0 chr9 14609854 14609943 -127661501 + L1MA4A LINE L1 6207 6295 -8 1618 192 28 0 chr9 14610133 14610420 -127661024 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr9 14610561 14610591 -127660853 + AT_rich Low_complexity Low_complexity 1 30 0 2346 84 0 3 chr9 14611384 14611680 -127659764 - AluY SINE Alu -16 295 1 27 0 0 0 chr9 14611684 14611711 -127659733 + AT_rich Low_complexity Low_complexity 1 27 0 683 249 110 74 chr9 14612078 14612349 -127659095 - L1 LINE L1 -1984 4162 3902 13794 141 16 36 chr9 14612349 14614152 -127657292 - Tigger1 DNA MER2_type -1 2417 580 2228 100 3 0 chr9 14614152 14614443 -127657001 - AluSq SINE Alu -21 292 1 13794 141 16 36 chr9 14614443 14614491 -127656953 - Tigger1 DNA MER2_type -1838 580 533 1749 178 3 3 chr9 14614491 14614789 -127656655 - AluJo SINE Alu -9 303 6 13794 141 16 36 chr9 14614789 14615401 -127656043 - Tigger1 DNA MER2_type -1885 533 2 683 249 110 74 chr9 14615401 14615667 -127655777 - L1 LINE L1 -2244 3902 3606 21 36 0 0 chr9 14615667 14615695 -127655749 + AT_rich Low_complexity Low_complexity 1 28 0 2005 131 35 35 chr9 14615724 14616097 -127655347 - THE1C LTR MaLR -2 373 1 803 230 20 5 chr9 14616510 14616714 -127654730 + L1M4 LINE L1 2670 2876 -3270 21326 34 8 0 chr9 14616748 14620130 -127651314 - L1PA4 LINE L1 -3 6152 2748 15408 54 6 1 chr9 14620130 14622108 -127649336 + L1PA4 LINE L1 766 2751 -3395 25 31 0 0 chr9 14622286 14622318 -127649126 + AT_rich Low_complexity Low_complexity 1 32 0 209 244 158 12 chr9 14622574 14622656 -127648788 + MIR SINE MIR 150 243 -19 27 73 0 0 chr9 14622750 14622805 -127648639 + AT_rich Low_complexity Low_complexity 1 55 0 458 270 31 75 chr9 14622811 14623037 -127648407 + MIR SINE MIR 47 262 0 23 78 0 0 chr9 14624506 14624557 -127646887 + AT_rich Low_complexity Low_complexity 1 51 0 1582 193 30 7 chr9 14624665 14624966 -127646478 + AluJo SINE Alu 3 310 -2 362 141 0 26 chr9 14624971 14625049 -127646395 + (GGA)n Simple_repeat Simple_repeat 3 78 0 31 44 0 0 chr9 14625930 14625975 -127645469 + AT_rich Low_complexity Low_complexity 1 45 0 473 276 63 16 chr9 14626138 14626265 -127645179 - MER5B DNA MER1_type 0 178 46 1553 173 14 11 chr9 14626267 14626550 -127644894 - L1MC1 LINE L1 -4 6329 6046 2308 113 0 0 chr9 14626557 14626868 -127644576 - AluSq SINE Alu -2 311 1 341 327 129 25 chr9 14627223 14627305 -127644139 + MIR SINE MIR 28 100 -162 2353 92 3 3 chr9 14627305 14627610 -127643834 - AluY SINE Alu -6 305 1 341 327 129 25 chr9 14627610 14627729 -127643715 + MIR SINE MIR 100 250 -12 21 36 0 0 chr9 14630362 14630390 -127641054 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr9 14631096 14631116 -127640328 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1717 136 38 4 chr9 14631122 14631386 -127640058 - AluSx SINE Alu -39 273 1 323 354 9 9 chr9 14632504 14632617 -127638827 + MIR SINE MIR 21 133 -129 2139 136 3 0 chr9 14633214 14633522 -127637922 - AluSq SINE Alu -4 309 1 271 203 87 14 chr9 14634265 14634334 -127637110 + MIR3 SINE MIR 130 203 -5 1188 131 11 0 chr9 14635753 14635936 -127635508 - AluSg/x SINE Alu -6 306 122 1894 128 30 20 chr9 14636145 14636449 -127634995 + AluSc SINE Alu 1 307 -2 2006 190 53 25 chr9 14636801 14637290 -127634154 + MLT1D LTR MaLR 1 503 -2 238 176 0 0 chr9 14637505 14637556 -127633888 + L1MA4A LINE L1 6005 6055 -248 281 250 62 91 chr9 14637951 14638159 -127633285 - MLT1L LTR MaLR -74 541 235 1803 175 0 3 chr9 14639060 14639357 -127632087 - AluJb SINE Alu -14 298 3 1020 207 87 103 chr9 14639595 14639951 -127631493 + MER39 LTR ERV1 5 522 -185 2240 98 0 25 chr9 14639951 14640268 -127631176 + AluY SINE Alu 3 311 0 1020 207 87 103 chr9 14640268 14640452 -127630992 + MER39 LTR ERV1 522 707 0 197 236 73 55 chr9 14640576 14640631 -127630813 + L2 LINE L2 3204 3259 -54 186 350 100 17 chr9 14640625 14640745 -127630699 + MIR SINE MIR 46 175 -87 * 442 275 36 0 chr9 14640871 14641009 -127630435 + MIR3 SINE MIR 58 200 -8 22 35 0 0 chr9 14643606 14643635 -127627809 + AT_rich Low_complexity Low_complexity 1 29 0 633 250 132 23 chr9 14644166 14644386 -127627058 + MIR SINE MIR 9 252 -10 303 298 26 40 chr9 14644382 14644533 -127626911 - MIR SINE MIR -108 154 6 * 585 224 170 0 chr9 14644533 14644680 -127626764 + MER5A DNA MER1_type 10 181 -8 234 0 0 0 chr9 14644925 14644951 -127626493 + (TA)n Simple_repeat Simple_repeat 2 27 0 1511 134 25 109 chr9 14644966 14645287 -127626157 - AluYb8 SINE Alu -24 294 1 426 297 95 18 chr9 14645427 14645649 -127625795 + MIR SINE MIR 13 251 -11 23 0 0 0 chr9 14646875 14646898 -127624546 + AT_rich Low_complexity Low_complexity 1 23 0 2856 157 4 6 chr9 14647540 14648042 -127623402 - L1MA3 LINE L1 -5 6300 5800 564 209 68 31 chr9 14648369 14648532 -127622912 + MER104 DNA Tc2 2 170 -10 249 139 0 0 chr9 14648647 14648690 -127622754 + (A)n Simple_repeat Simple_repeat 1 43 0 201 191 0 24 chr9 14649726 14649768 -127621676 + (CATA)n Simple_repeat Simple_repeat 4 44 0 427 176 80 22 chr9 14649783 14649947 -127621497 + MER104 DNA Tc2 3 177 -3 609 276 102 18 chr9 14649956 14650181 -127621263 - MIR SINE MIR -1 261 18 605 283 102 0 chr9 14650949 14651136 -127620308 + MIR SINE MIR 54 259 -3 765 256 81 18 chr9 14651764 14651987 -127619457 + MIR SINE MIR 14 250 -12 1060 234 83 18 chr9 14652814 14653152 -127618292 + L1ME3 LINE L1 5802 6161 -1 219 36 0 0 chr9 14654469 14654497 -127616947 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr9 14654614 14654635 -127616809 + AT_rich Low_complexity Low_complexity 1 21 0 362 305 37 24 chr9 14655355 14655418 -127616026 - MER5B DNA MER1_type -3 175 114 1708 142 0 58 chr9 14655418 14655727 -127615717 + AluSx SINE Alu 1 291 -21 362 305 37 24 chr9 14655727 14655827 -127615617 - MER5B DNA MER1_type -64 114 10 1071 164 11 0 chr9 14655844 14656027 -127615417 - MER5A DNA MER1_type -4 185 1 2097 122 7 0 chr9 14656454 14656748 -127614696 - AluSx SINE Alu -16 296 1 1693 186 58 35 chr9 14657233 14657610 -127613834 + MLT1B LTR MaLR 1 386 -4 400 238 77 71 chr9 14658252 14658420 -127613024 - MIR SINE MIR -43 219 51 374 303 97 7 chr9 14659442 14659587 -127611857 - MIR3 SINE MIR -5 203 46 299 358 24 12 chr9 14660111 14660276 -127611168 - MIR SINE MIR -5 257 91 * 338 290 193 17 chr9 14660267 14660443 -127611001 + MIR SINE MIR 49 255 -7 2165 149 3 32 chr9 14660576 14660951 -127610493 + THE1B LTR MaLR 1 364 0 11196 112 6 0 chr9 14660952 14662520 -127608924 + THE1B-int LTR MaLR 3 1580 0 2380 126 3 29 chr9 14662520 14662894 -127608550 + THE1B LTR MaLR 1 364 0 1961 157 0 10 chr9 14663132 14663437 -127608007 - AluSx SINE Alu -10 302 1 330 288 45 9 chr9 14663460 14663571 -127607873 + L2 LINE L2 3198 3312 -1 21 36 0 0 chr9 14665276 14665304 -127606140 + AT_rich Low_complexity Low_complexity 1 28 0 414 313 22 89 chr9 14665421 14665645 -127605799 + MIR SINE MIR 12 220 -42 12586 170 13 16 chr9 14666393 14669275 -127602169 + L1PA14 LINE L1 2800 5778 -383 2537 64 0 3 chr9 14669275 14669586 -127601858 + AluY SINE Alu 1 310 -1 12586 170 13 16 chr9 14669586 14669966 -127601478 + L1PA14 LINE L1 5778 6158 -3 675 226 59 23 chr9 14670202 14670423 -127601021 - MER106A DNA MER1_type -7 229 1 222 37 0 0 chr9 14670668 14670695 -127600749 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 813 45 63 0 chr9 14670695 14670806 -127600638 + L1PA4 LINE L1 6035 6152 -3 26 0 0 0 chr9 14670806 14670832 -127600612 + AT_rich Low_complexity Low_complexity 1 26 0 275 333 81 0 chr9 14671074 14671197 -127600247 + MIR SINE MIR 53 185 -77 196 333 31 21 chr9 14671217 14671313 -127600131 + L2 LINE L2 2799 2895 -419 1773 154 17 7 chr9 14671465 14671763 -127599681 - LTR1 LTR ERV1 0 785 485 1543 162 68 11 chr9 14672210 14672488 -127598956 + AluJb SINE Alu 11 304 -8 359 298 147 18 chr9 14672704 14672929 -127598515 - MIR SINE MIR -2 260 7 216 0 0 0 chr9 14673035 14673059 -127598385 + (CA)n Simple_repeat Simple_repeat 1 24 0 316 251 158 42 chr9 14673066 14673281 -127598163 - L1ME4a LINE L1 -157 5964 5725 417 268 51 51 chr9 14673620 14673777 -127597667 + MIR SINE MIR 34 190 -72 520 252 76 0 chr9 14674975 14675106 -127596338 - MER69A DNA AcHobo 0 177 37 21 0 0 0 chr9 14676268 14676289 -127595155 + AT_rich Low_complexity Low_complexity 1 21 0 199 294 43 33 chr9 14677726 14677818 -127593626 + MIR SINE MIR 148 240 -22 252 360 13 27 chr9 14678103 14678253 -127593191 - MIR3 SINE MIR -41 167 20 276 346 58 10 chr9 14678317 14678421 -127593023 - L2 LINE L2 -9 3304 3196 210 171 26 26 chr9 14678735 14678811 -127592633 + GA-rich Low_complexity Low_complexity 2 77 0 1279 200 35 46 chr9 14678828 14679113 -127592331 + AluJo SINE Alu 1 282 -30 315 49 0 0 chr9 14679118 14679159 -127592285 + (GA)n Simple_repeat Simple_repeat 2 42 0 374 271 97 26 chr9 14680636 14680791 -127590653 - MIR SINE MIR -44 218 53 24 32 0 0 chr9 14681545 14681576 -127589868 + AT_rich Low_complexity Low_complexity 1 31 0 476 111 33 11 chr9 14681594 14681684 -127589760 - L1PA4 LINE L1 -3 6152 6061 23 0 0 0 chr9 14682185 14682208 -127589236 + AT_rich Low_complexity Low_complexity 1 23 0 200 350 12 25 chr9 14682477 14682557 -127588887 - L2 LINE L2 -612 2702 2624 2409 87 3 3 chr9 14682684 14682993 -127588451 - AluSg SINE Alu 0 310 2 192 318 16 16 chr9 14683039 14683102 -127588342 + MIR SINE MIR 3 65 -197 239 344 64 8 chr9 14684350 14684475 -127586969 - MIR SINE MIR -74 188 57 234 257 57 14 chr9 14685992 14686062 -127585382 - MIR SINE MIR -69 193 121 211 263 95 21 chr9 14686134 14686229 -127585215 + L2 LINE L2 3167 3268 -4 348 315 66 11 chr9 14686489 14686670 -127584774 + L1ME4a LINE L1 5638 5828 -293 271 200 0 0 chr9 14686697 14686752 -127584692 - L1ME3A LINE L1 -5 6165 6111 301 215 28 37 chr9 14686942 14687049 -127584395 + L1ME4a LINE L1 5946 6051 -70 270 299 0 0 chr9 14688708 14688785 -127582659 + MIR SINE MIR 84 160 -102 227 209 0 0 chr9 14688860 14688903 -127582541 + MIR SINE MIR 109 151 -57 21 89 0 0 chr9 14689644 14689700 -127581744 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr9 14690156 14690186 -127581258 + AT_rich Low_complexity Low_complexity 1 30 0 1364 94 59 10 chr9 14690477 14690680 -127580764 + L1PA8 LINE L1 5954 6166 -6 358 252 238 14 chr9 14690746 14690893 -127580551 + MIR SINE MIR 82 261 -1 264 255 0 0 chr9 14691476 14691527 -127579917 - L2 LINE L2 -4 3268 3218 674 281 110 26 chr9 14691550 14691895 -127579549 - MLT1I LTR MaLR -20 389 16 1558 68 5 0 chr9 14692272 14692464 -127578980 + AluSp SINE Alu 1 193 -120 250 75 0 0 chr9 14692464 14692504 -127578940 + AluSp SINE Alu 261 300 -2 2835 159 4 6 chr9 14694062 14694564 -127576880 + L1MA3 LINE L1 5800 6300 -5 23 0 0 0 chr9 14695208 14695231 -127576213 + AT_rich Low_complexity Low_complexity 1 23 0 267 361 33 8 chr9 14696482 14696604 -127574840 + MIR SINE MIR 61 185 -77 185 276 35 0 chr9 14697031 14697089 -127574355 + L2 LINE L2 3254 3313 0 2333 81 0 42 chr9 14697224 14697533 -127573911 - AluSq SINE Alu -17 296 1 965 224 85 4 chr9 14697572 14697831 -127573613 - MER63 DNA MER1_type 0 1062 783 24 32 0 0 chr9 14698108 14698139 -127573305 + AT_rich Low_complexity Low_complexity 1 31 0 4977 58 6 6 chr9 14698233 14698883 -127572561 + L1PA8 LINE L1 5523 6172 0 11701 36 4 0 chr9 14699153 14701269 -127570175 + L1PA4 LINE L1 3880 5999 -156 240 111 0 0 chr9 14701727 14701763 -127569681 + (CTAA)n Simple_repeat Simple_repeat 1 36 0 324 70 0 0 chr9 14703406 14703449 -127567995 + (TG)n Simple_repeat Simple_repeat 2 44 0 396 0 0 0 chr9 14704594 14704638 -127566806 + (TA)n Simple_repeat Simple_repeat 2 45 0 333 0 0 0 chr9 14704639 14704676 -127566768 + (CA)n Simple_repeat Simple_repeat 1 37 0 2093 117 3 0 chr9 14705204 14705536 -127565908 + AluSx SINE Alu 1 333 0 348 254 108 39 chr9 14705656 14705786 -127565658 + MIR SINE MIR 16 154 -108 680 224 13 19 chr9 14705864 14706020 -127565424 + MER5B DNA MER1_type 24 178 0 209 329 29 0 chr9 14707489 14707559 -127563885 - L2 LINE L2 -1 3271 3200 302 329 48 27 chr9 14707617 14707763 -127563681 + MIR SINE MIR 57 205 -57 246 224 0 0 chr9 14708078 14708127 -127563317 + GA-rich Low_complexity Low_complexity 2 50 0 810 231 23 0 chr9 14708228 14708401 -127563043 + MER45A DNA AcHobo 2 178 0 398 235 110 29 chr9 14709135 14709148 -127562296 - L3 LINE CR1 -159 1418 1407 2246 120 0 0 chr9 14709148 14709447 -127561997 - AluSx SINE Alu -8 304 6 398 235 110 29 chr9 14709447 14709569 -127561875 - L3 LINE CR1 -170 1407 1272 182 367 0 62 chr9 14710753 14710881 -127560563 - MIR SINE MIR -120 142 23 32 0 0 0 chr9 14711223 14711255 -127560189 + AT_rich Low_complexity Low_complexity 1 32 0 311 261 54 9 chr9 14712211 14712322 -127559122 + MIR SINE MIR 147 262 0 265 303 91 45 chr9 14713003 14713135 -127558309 - MIR3 SINE MIR -38 170 33 991 282 4 20 chr9 14713216 14713468 -127557976 - MIR SINE MIR -10 252 5 198 71 0 0 chr9 14715953 14715981 -127555463 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 21 82 0 0 chr9 14717336 14717385 -127554059 + AT_rich Low_complexity Low_complexity 1 49 0 891 313 36 48 chr9 14720244 14720637 -127550807 + L3 LINE CR1 983 1370 -207 685 233 138 35 chr9 14720779 14721011 -127550433 - L2 LINE L2 0 3313 3058 418 263 53 7 chr9 14721611 14721763 -127549681 - MLT1J LTR MaLR -4 507 349 261 366 52 22 chr9 14721952 14722086 -127549358 - MIR SINE MIR -55 153 16 287 267 47 12 chr9 14724345 14724431 -127547013 - MIR3 SINE MIR -9 199 111 348 24 0 0 chr9 14725136 14725177 -127546267 + (CA)n Simple_repeat Simple_repeat 1 41 0 2075 85 37 0 chr9 14727048 14727350 -127544094 - AluSg SINE Alu 0 312 1 448 217 273 0 chr9 14727925 14728068 -127543376 + MER5A DNA MER1_type 7 188 -1 269 26 26 0 chr9 14728284 14728322 -127543122 + (CA)n Simple_repeat Simple_repeat 1 39 0 342 338 164 17 chr9 14728341 14728572 -127542872 - L2 LINE L2 -3 3310 3046 311 332 111 29 chr9 14728840 14729120 -127542324 + LTR16C LTR ERVL 189 491 0 1282 261 155 34 chr9 14729122 14729687 -127541757 - L2 LINE L2 -266 3047 2414 368 314 84 26 chr9 14729961 14730187 -127541257 - MIR SINE MIR -10 252 14 1752 162 26 13 chr9 14730409 14730717 -127540727 - AluJb SINE Alu 0 312 1 197 330 55 118 chr9 14731716 14732167 -127539277 - L2 LINE L2 -14 3258 2836 892 215 0 0 chr9 14732291 14732454 -127538990 - FRAM SINE Alu -3 163 1 1638 105 149 0 chr9 14732483 14732731 -127538713 - AluSx SINE Alu -16 286 2 816 152 0 0 chr9 14732743 14732868 -127538576 - FLAM_C SINE Alu -8 125 1 32 57 0 0 chr9 14733099 14733152 -127538292 + AT_rich Low_complexity Low_complexity 1 53 0 256 306 98 27 chr9 14733739 14733900 -127537544 + MER5A DNA MER1_type 1 181 -8 574 183 179 0 chr9 14734024 14734176 -127537268 + MER5A DNA MER1_type 4 189 0 755 265 115 0 chr9 14734184 14734384 -127537060 + MER58A DNA MER1_type 1 223 -1 2212 123 3 0 chr9 14735186 14735494 -127535950 + AluSx SINE Alu 1 309 -3 771 255 21 65 chr9 14735605 14735665 -127535779 + LTR16C LTR ERVL 209 270 -221 2296 96 7 3 chr9 14735665 14735966 -127535478 - AluSc SINE Alu -7 302 1 771 255 21 65 chr9 14735966 14736194 -127535250 + LTR16C LTR ERVL 270 484 -7 1292 238 110 42 chr9 14736194 14736693 -127534751 + MLT1F LTR MaLR 1 593 0 533 357 75 27 chr9 14737140 14737541 -127533903 - MLT1K LTR MaLR -162 426 7 675 238 61 0 chr9 14738785 14738949 -127532495 - MER69A DNA AcHobo 0 177 4 634 295 45 37 chr9 14739155 14739399 -127532045 + MIR SINE MIR 17 262 0 1632 212 21 9 chr9 14739684 14740108 -127531336 + L1M4 LINE L1 4412 4840 -1306 21 36 0 0 chr9 14740289 14740317 -127531127 + AT_rich Low_complexity Low_complexity 1 28 0 2071 175 31 44 chr9 14741133 14741585 -127529859 - LTR47A LTR ERVL -6 446 1 220 355 125 5 chr9 14741599 14741799 -127529645 - L2 LINE L2 -530 2784 2561 1140 250 68 33 chr9 14742234 14742811 -127528633 - L1MC5 LINE L1 -35 7926 7330 564 247 38 59 chr9 14742859 14743045 -127528399 + MER20 DNA MER1_type 29 210 -9 10830 210 16 15 chr9 14743189 14748349 -127523095 - L1PA15 LINE L1 -13 6803 1220 2316 103 7 0 chr9 14748349 14748651 -127522793 - AluY SINE Alu -7 304 1 10830 210 16 15 chr9 14748651 14749872 -127521572 - L1PA15 LINE L1 -5596 1220 1 453 129 10 40 chr9 14749882 14749983 -127521461 - L1MC5 LINE L1 -784 7177 7080 359 326 52 7 chr9 14750692 14750827 -127520617 - MLT1K LTR MaLR -391 197 57 183 335 150 17 chr9 14752055 14752228 -127519216 - L3b LINE CR1 -102 1481 1286 885 307 69 10 chr9 14752541 14752956 -127518488 + LTR16A LTR ERVL 1 442 -15 1133 271 44 53 chr9 14752972 14753425 -127518019 + HERV16 LTR ERVL 1 449 -4547 357 304 35 8 chr9 14753577 14753754 -127517690 + LTR16A1 LTR ERVL 33 211 -239 243 188 0 0 chr9 14754136 14754184 -127517260 + CT-rich Low_complexity Low_complexity 5 52 0 330 300 158 0 chr9 14754609 14754729 -127516715 - MIR3 SINE MIR -39 169 31 24 32 0 0 chr9 14754815 14754846 -127516598 + AT_rich Low_complexity Low_complexity 1 31 0 212 216 0 74 chr9 14754964 14755112 -127516332 + CT-rich Low_complexity Low_complexity 2 138 0 410 315 52 4 chr9 14756491 14756723 -127514721 - L1ME4a LINE L1 -276 5845 5603 291 366 91 0 chr9 14757472 14757658 -127513786 + MIR SINE MIR 60 262 0 223 283 17 17 chr9 14757915 14757975 -127513469 + MIR3 SINE MIR 97 156 -52 2087 113 55 0 chr9 14758082 14758374 -127513070 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr9 14758410 14758432 -127513012 + AT_rich Low_complexity Low_complexity 1 22 0 1444 194 132 52 chr9 14758804 14759268 -127512176 + MLT1D LTR MaLR 5 505 0 24 0 0 0 chr9 14761508 14761532 -127509912 + AT_rich Low_complexity Low_complexity 1 24 0 324 315 8 8 chr9 14761824 14761951 -127509493 + MLT1L LTR MaLR 118 244 -371 387 293 103 8 chr9 14762002 14762255 -127509189 + MLT1L LTR MaLR 331 607 -8 351 0 0 0 chr9 14762387 14762426 -127509018 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 296 307 35 26 chr9 14764516 14764630 -127506814 + MIR SINE MIR 10 124 -138 192 276 26 92 chr9 14764671 14764747 -127506697 - L2 LINE L2 0 3313 3243 248 217 43 29 chr9 14764781 14764850 -127506594 + MIR SINE MIR 192 261 -1 365 301 108 42 chr9 14766463 14766798 -127504646 - MLT1I LTR MaLR 0 409 53 1574 121 0 27 chr9 14766958 14767214 -127504230 - L1PA16 LINE L1 -1 6165 5917 1876 125 3 3 chr9 14767214 14767511 -127503933 + L1PA16 LINE L1 5611 5907 -259 949 176 58 0 chr9 14767571 14767759 -127503685 + MER20 DNA MER1_type 1 199 -20 243 205 0 64 chr9 14767835 14767913 -127503531 + L1ME2 LINE L1 4747 4819 -1327 367 317 21 14 chr9 14767944 14768086 -127503358 + L1ME2 LINE L1 4910 5052 -1094 3140 215 71 18 chr9 14768266 14768327 -127503117 + L1MC3 LINE L1 6797 6853 -932 207 0 0 0 chr9 14768327 14768350 -127503094 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3140 215 71 18 chr9 14768350 14769221 -127502223 + L1MC3 LINE L1 6853 7778 -7 262 274 14 7 chr9 14769246 14769392 -127502052 + L1M2 LINE L1 5299 5445 -867 999 106 0 0 chr9 14769440 14769572 -127501872 - AluYb8 SINE Alu -186 132 1 2071 137 0 7 chr9 14769663 14769969 -127501475 + AluJb SINE Alu 9 312 0 368 236 90 46 chr9 14770016 14770086 -127501358 + L1ME2 LINE L1 5601 5666 -498 1959 140 19 29 chr9 14770086 14770465 -127500979 + THE1C LTR MaLR 1 375 0 368 236 90 46 chr9 14770465 14770593 -127500851 + L1ME2 LINE L1 5666 5804 -360 224 139 69 28 chr9 14770613 14770685 -127500759 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 297 206 168 76 chr9 14771014 14771145 -127500299 + MER5A DNA MER1_type 47 189 0 190 196 22 22 chr9 14771424 14771470 -127499974 + L2 LINE L2 1190 1235 -2079 295 231 122 103 chr9 14771970 14772281 -127499163 + MLT1H LTR MaLR 230 546 -3 558 198 16 110 chr9 14774000 14774182 -127497262 + L1ME2 LINE L1 5965 6129 -35 669 304 99 21 chr9 14774190 14774473 -127496971 - L2 LINE L2 -470 2844 2540 207 0 0 0 chr9 14774483 14774506 -127496938 + (CTGTG)n Simple_repeat Simple_repeat 2 24 0 819 249 179 6 chr9 14774506 14774864 -127496580 + LTR16A LTR ERVL 26 445 -5 294 244 23 12 chr9 14774994 14775080 -127496364 + MIR SINE MIR 60 146 -62 201 39 0 0 chr9 14775373 14775399 -127496045 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 356 287 70 9 chr9 14775527 14775642 -127495802 + L2 LINE L2 2934 3055 -217 1205 251 51 11 chr9 14776111 14776599 -127494845 + MLT1H1 LTR MaLR 1 555 0 1985 130 39 41 chr9 14776788 14777150 -127494294 - THE1B LTR MaLR -3 361 1 1506 150 27 11 chr9 14777189 14777449 -127493995 + AluJo SINE Alu 49 312 0 615 157 157 0 chr9 14777488 14777596 -127493848 + FLAM_C SINE Alu 1 125 -18 184 212 82 129 chr9 14777951 14777988 -127493456 + MER5A DNA MER1_type 97 134 -55 2445 75 10 0 chr9 14777988 14778296 -127493148 - AluSp SINE Alu -1 312 2 184 212 82 129 chr9 14778296 14778343 -127493101 + MER5A DNA MER1_type 134 177 -12 2104 119 3 10 chr9 14778906 14779209 -127492235 + AluSx SINE Alu 1 301 -11 814 245 39 10 chr9 14782023 14782227 -127489217 - MIR SINE MIR 0 262 53 2272 117 0 13 chr9 14784663 14784979 -127486465 + AluSx SINE Alu 1 312 0 2010 133 11 0 chr9 14786623 14786908 -127484536 - AluSx SINE Alu -24 288 1 1034 292 31 58 chr9 14787287 14787922 -127483522 - L2 LINE L2 -5 3308 2694 881 233 193 7 chr9 14788005 14788310 -127483134 + LTR50 LTR ERVL 23 384 -411 553 205 176 5 chr9 14788338 14788548 -127482896 + LTR50 LTR ERVL 547 792 -3 1238 279 71 8 chr9 14788550 14788944 -127482500 - L2 LINE L2 -614 2700 2282 323 314 51 8 chr9 14789075 14789193 -127482251 + MIR SINE MIR 17 139 -123 467 270 72 7 chr9 14789292 14789444 -127482000 + MIR SINE MIR 84 245 -17 2416 115 13 13 chr9 14789694 14790069 -127481375 + THE1C LTR MaLR 1 375 0 339 285 190 22 chr9 14790334 14790513 -127480931 + MIR SINE MIR 3 211 -51 2046 124 0 0 chr9 14790598 14790872 -127480572 - AluSx SINE Alu -17 295 22 22 0 0 0 chr9 14791503 14791525 -127479919 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr9 14793310 14793349 -127478095 + (CA)n Simple_repeat Simple_repeat 2 40 0 459 0 0 0 chr9 14794815 14794866 -127476578 + (TA)n Simple_repeat Simple_repeat 1 51 0 309 354 41 7 chr9 14794938 14795120 -127476324 + MIR SINE MIR 5 192 -62 464 321 51 19 chr9 14795538 14795753 -127475691 - MIR SINE MIR -29 233 12 2189 100 3 3 chr9 14796356 14796655 -127474789 + AluSg SINE Alu 1 299 -11 520 273 110 89 chr9 14796947 14797657 -127473787 + L1ME4a LINE L1 5379 6103 -18 838 213 19 128 chr9 14798866 14799233 -127472211 - L1MC4 LINE L1 -1179 6863 6537 386 273 8 0 chr9 14799404 14799525 -127471919 - L1MC4 LINE L1 -1461 6581 6460 504 0 0 0 chr9 14800072 14800128 -127471316 + (TG)n Simple_repeat Simple_repeat 1 56 0 607 280 185 49 chr9 14800348 14800716 -127470728 + MLT1J2 LTR MaLR 31 448 -2 452 76 0 0 chr9 14800839 14800905 -127470539 - AluY SINE Alu -6 305 240 1442 80 0 0 chr9 14800905 14801081 -127470363 - AluY SINE Alu -135 176 1 197 286 82 61 chr9 14802636 14802734 -127468710 - L2 LINE L2 -5 3267 3168 348 323 92 15 chr9 14802786 14802916 -127468528 - MER91A DNA MER1_type -21 175 36 223 244 0 0 chr9 14803845 14803890 -127467554 + GA-rich Low_complexity Low_complexity 1 45 0 400 377 14 0 chr9 14803940 14804086 -127467358 + MIR3 SINE MIR 32 179 -29 212 172 0 31 chr9 14804738 14804802 -127466642 + GA-rich Low_complexity Low_complexity 3 64 0 5443 124 21 3 chr9 14805312 14806670 -127464774 - L1PA15 LINE L1 -3 6162 4765 2318 274 49 21 chr9 14806674 14808001 -127463443 - L1PA13 LINE L1 -4962 1825 1 600 272 97 9 chr9 14808531 14808748 -127462696 - MIR SINE MIR -6 256 21 515 268 56 62 chr9 14810202 14810542 -127460902 + L1MC4a LINE L1 5727 6064 -1744 22 35 0 0 chr9 14810711 14810740 -127460704 + AT_rich Low_complexity Low_complexity 1 29 0 243 246 0 0 chr9 14810768 14810825 -127460619 - L1 LINE L1 -1208 4938 4882 761 209 20 7 chr9 14810951 14811104 -127460340 - FRAM SINE Alu -11 155 1 354 318 43 51 chr9 14811239 14811420 -127460024 - L1 LINE L1 -1537 4609 4428 9604 80 18 4 chr9 14811420 14813534 -127457910 - L1PA7 LINE L1 -2 6152 4018 354 318 43 51 chr9 14813534 14813818 -127457626 - L1 LINE L1 -1718 4428 4132 252 0 0 0 chr9 14815304 14815332 -127456112 + (TG)n Simple_repeat Simple_repeat 2 29 0 208 250 0 0 chr9 14816675 14816731 -127454713 + A-rich Low_complexity Low_complexity 1 56 0 286 304 22 0 chr9 14816731 14816820 -127454624 + L3 LINE CR1 1392 1482 -95 420 254 177 8 chr9 14816820 14816950 -127454494 - MER5A DNA MER1_type 0 189 38 2191 120 13 0 chr9 14817987 14818295 -127453149 + AluSq SINE Alu 1 312 -1 568 274 84 31 chr9 14818872 14819098 -127452346 + MIR SINE MIR 15 252 -10 333 251 82 88 chr9 14819114 14819285 -127452159 + MIR SINE MIR 79 248 -14 21 0 0 0 chr9 14819299 14819320 -127452124 + AT_rich Low_complexity Low_complexity 1 21 0 207 391 68 24 chr9 14819956 14820163 -127451281 + L2 LINE L2 2679 2894 -420 258 264 91 0 chr9 14820248 14820369 -127451075 + L1MEd LINE L1 46 177 -5942 251 324 102 36 chr9 14820497 14820722 -127450722 + L1MEd LINE L1 307 546 -5573 281 217 79 122 chr9 14821056 14821425 -127450019 + L1MEd LINE L1 895 1247 -4872 335 319 77 64 chr9 14821477 14821712 -127449732 + L1MEc LINE L1 111 348 -6048 4114 143 58 23 chr9 14822449 14823193 -127448251 - LTR1 LTR ERV1 0 785 16 1269 286 135 29 chr9 14823423 14824420 -127447024 + L1MEc LINE L1 1265 2367 -4029 3316 225 44 22 chr9 14824499 14825627 -127445817 - L1ME1 LINE L1 0 6166 5018 395 278 181 29 chr9 14825845 14826387 -127445057 + L1P LINE L1 4027 4667 -1479 189 0 0 0 chr9 14829493 14829514 -127441930 + (T)n Simple_repeat Simple_repeat 1 21 0 2155 128 0 0 chr9 14830146 14830436 -127441008 - AluSx SINE Alu -22 290 1 550 184 53 9 chr9 14831156 14831270 -127440174 + MLT1A1 LTR MaLR 4 122 -243 313 242 247 42 chr9 14831755 14831945 -127439499 + MIR SINE MIR 28 256 -6 217 359 101 38 chr9 14833007 14833166 -127438278 - L3 LINE CR1 -3 1574 1406 200 233 0 0 chr9 14833204 14833247 -127438197 + (TA)n Simple_repeat Simple_repeat 2 44 0 581 324 70 9 chr9 14833291 14833504 -127437940 + MIR SINE MIR 37 262 0 453 216 10 49 chr9 14833551 14833653 -127437791 - Tigger7 DNA MER2_type 0 2587 2490 * 1294 167 108 4 chr9 14833652 14833892 -127437552 - Tigger7 DNA MER2_type -466 267 3 418 289 37 44 chr9 14834106 14834365 -127437079 - L1ME3A LINE L1 -225 5945 5691 256 330 33 0 chr9 14834388 14834479 -127436965 - L3 LINE CR1 -211 1366 1273 2215 186 22 5 chr9 14834749 14835162 -127436282 - MSTB LTR MaLR -6 420 1 28 61 0 0 chr9 14835316 14835365 -127436079 + AT_rich Low_complexity Low_complexity 1 49 0 849 187 187 0 chr9 14835805 14836003 -127435441 + MER46A DNA MER2_type 1 235 -1 226 330 23 29 chr9 14836047 14836220 -127435224 - L1MC/D LINE L1 -1954 5854 5683 311 261 87 26 chr9 14836220 14836335 -127435109 - L2 LINE L2 -10 3303 3182 21 0 0 0 chr9 14836747 14836768 -127434676 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr9 14836942 14836979 -127434465 + AT_rich Low_complexity Low_complexity 1 37 0 363 23 0 0 chr9 14837020 14837064 -127434380 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2505 77 3 0 chr9 14837110 14837422 -127434022 - AluSp SINE Alu 0 313 1 26 30 0 0 chr9 14837496 14837529 -127433915 + AT_rich Low_complexity Low_complexity 1 33 0 314 331 41 8 chr9 14838030 14838151 -127433293 + MIR SINE MIR 47 171 -91 716 252 26 17 chr9 14838476 14838706 -127432738 + L1ME3A LINE L1 5868 6099 -71 2293 76 3 0 chr9 14838804 14839092 -127432352 - AluY SINE Alu -22 289 1 252 244 16 41 chr9 14839135 14839258 -127432186 - L1ME4a LINE L1 -17 6104 5985 374 248 162 30 chr9 14839268 14839466 -127431978 - L1ME4a LINE L1 -195 5926 5703 183 42 0 0 chr9 14841999 14842023 -127429421 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1667 116 66 76 chr9 14842719 14843022 -127428422 - AluSx SINE Alu -12 300 1 1988 143 7 7 chr9 14843326 14843634 -127427810 + AluJb SINE Alu 1 308 -4 331 238 0 76 chr9 14844010 14844115 -127427329 + MIR SINE MIR 97 193 -69 6602 152 15 20 chr9 14844680 14845027 -127426417 - L1PB1 LINE L1 -1 6150 5802 222 37 0 0 chr9 14845027 14845054 -127426390 + (TG)n Simple_repeat Simple_repeat 2 28 0 6602 152 15 20 chr9 14845054 14846893 -127424551 - L1PB1 LINE L1 -349 5802 3977 236 374 12 0 chr9 14847372 14847455 -127423989 - L2 LINE L2 -3 3310 3227 212 158 0 0 chr9 14848570 14848608 -127422836 + CT-rich Low_complexity Low_complexity 1 38 0 369 131 0 0 chr9 14848625 14848686 -127422758 + (CA)n Simple_repeat Simple_repeat 2 62 0 324 0 0 0 chr9 14849139 14849175 -127422269 + (CA)n Simple_repeat Simple_repeat 2 37 0 277 272 39 39 chr9 14849302 14849446 -127421998 + MER5B DNA MER1_type 29 182 -7 180 163 0 0 chr9 14849471 14849514 -127421930 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 272 371 41 6 chr9 14850569 14850734 -127420710 - MIR3 SINE MIR -13 195 22 2190 122 0 6 chr9 14851052 14851364 -127420080 + AluSx SINE Alu 1 310 -2 1689 165 14 14 chr9 14851631 14851928 -127419516 + AluSx SINE Alu 1 297 -15 753 270 133 6 chr9 14852879 14853201 -127418243 + MER115 DNA AcHobo 331 693 0 226 308 15 0 chr9 14854359 14854424 -127417020 + MIR SINE MIR 74 139 -123 396 93 47 23 chr9 14855598 14855684 -127415760 - L1MA9 LINE L1 0 6312 6225 3441 142 81 9 chr9 14855702 14856372 -127415072 - L1MA9 LINE L1 -149 6163 5446 1788 45 18 18 chr9 14856386 14856608 -127414836 - AluY SINE Alu -13 298 77 1019 193 57 5 chr9 14857876 14858088 -127413356 + MER58A DNA MER1_type 2 224 0 239 304 29 0 chr9 14859284 14859353 -127412091 + CT-rich Low_complexity Low_complexity 5 75 0 240 86 0 0 chr9 14859677 14859712 -127411732 + (TCC)n Simple_repeat Simple_repeat 1 35 0 264 282 28 0 chr9 14859878 14859949 -127411495 + (TATG)n Simple_repeat Simple_repeat 2 74 0 195 283 0 0 chr9 14861916 14861962 -127409482 - L2 LINE L2 -26 3287 3242 785 218 39 6 chr9 14861997 14862176 -127409268 - MIR SINE MIR 0 262 78 480 313 124 41 chr9 14862794 14863360 -127408084 - L2 LINE L2 -580 2734 2122 1065 186 38 0 chr9 14864441 14864651 -127406793 + MER20 DNA MER1_type 2 219 0 1713 156 27 16 chr9 14865081 14865421 -127406023 + THE1C LTR MaLR 1 399 -29 802 124 0 0 chr9 14865455 14865576 -127405868 - L1PB1 LINE L1 -1 6150 6030 231 54 54 0 chr9 14865584 14865621 -127405823 + THE1A LTR MaLR 317 355 0 1924 164 3 0 chr9 14866067 14866365 -127405079 + AluJb SINE Alu 1 299 -13 680 132 23 8 chr9 14866449 14866578 -127404866 + L1MA9 LINE L1 6175 6305 -7 275 236 83 90 chr9 14866808 14866952 -127404492 + L2 LINE L2 3166 3308 -5 429 296 25 0 chr9 14867099 14867261 -127404183 - L1ME1 LINE L1 -5 6161 5996 213 403 0 0 chr9 14867612 14867689 -127403755 + L2 LINE L2 3231 3307 -6 1990 137 0 3 chr9 14867773 14868072 -127403372 - AluSx SINE Alu -14 298 1 763 139 0 0 chr9 14868085 14868200 -127403244 - AluSp/q SINE Alu -14 299 185 2143 100 13 13 chr9 14869589 14869899 -127401545 + AluSx SINE Alu 1 310 -2 34 24 0 0 chr9 14869952 14869993 -127401451 + AT_rich Low_complexity Low_complexity 1 41 0 272 320 39 13 chr9 14870263 14870416 -127401028 - L1MDa LINE L1 -3572 3276 3120 612 306 91 8 chr9 14870417 14870659 -127400785 - MIR SINE MIR 0 262 1 912 173 70 9 chr9 14870952 14871166 -127400278 + MER33 DNA MER1_type 5 231 -93 938 171 0 24 chr9 14871169 14871333 -127400111 + FRAM SINE Alu 2 161 -15 352 137 10 128 chr9 14871333 14871435 -127400009 + MER33 DNA MER1_type 232 321 -3 334 199 166 40 chr9 14871978 14872129 -127399315 - L1MDa LINE L1 -4518 2330 2161 2994 196 77 13 chr9 14872347 14873418 -127398026 - L1ME1 LINE L1 -63 6103 4959 11869 200 88 5 chr9 14873539 14876183 -127395261 - L1M4 LINE L1 -3984 2865 2 21 0 0 0 chr9 14876185 14876206 -127395238 + AT_rich Low_complexity Low_complexity 1 21 0 1729 119 31 97 chr9 14876583 14876902 -127394542 - AluSx SINE Alu -14 298 1 215 345 34 61 chr9 14877577 14877725 -127393719 - L2 LINE L2 -609 2705 2562 22 0 0 0 chr9 14877874 14877896 -127393548 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 14878821 14878849 -127392595 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 14879007 14879032 -127392412 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 14881180 14881204 -127390240 + AT_rich Low_complexity Low_complexity 1 24 0 325 254 117 73 chr9 14882096 14882301 -127389143 + MIR SINE MIR 49 262 0 275 188 145 0 chr9 14882960 14883029 -127388415 + MIR SINE MIR 78 156 -106 1001 217 55 0 chr9 14883653 14883870 -127387574 - MLT1A1 LTR MaLR 0 365 137 324 258 45 8 chr9 14883915 14884047 -127387397 + MER103 DNA DNA 28 164 -2 21 0 0 0 chr9 14884524 14884545 -127386899 + AT_rich Low_complexity Low_complexity 1 21 0 892 259 110 5 chr9 14884636 14885045 -127386399 - L1ME4a LINE L1 -128 5993 5542 683 284 155 36 chr9 14885450 14885837 -127385607 + L2 LINE L2 2881 3313 0 285 29 0 0 chr9 14886311 14886345 -127385099 + (TC)n Simple_repeat Simple_repeat 1 34 0 233 287 226 11 chr9 14887088 14887269 -127384175 - L3 LINE CR1 -169 1408 1189 520 304 32 57 chr9 14887272 14887555 -127383889 + Charlie8 DNA MER1_type 1 276 -2141 253 353 67 20 chr9 14887723 14887873 -127383571 - L3 LINE CR1 -384 1193 1037 1190 207 102 23 chr9 14887877 14888220 -127383224 + MLT1A2 LTR MaLR 1 370 -4 189 364 20 10 chr9 14888299 14888398 -127383046 - L3 LINE CR1 -665 912 813 302 279 61 41 chr9 14888424 14888571 -127382873 + MIR3 SINE MIR 8 157 -51 832 156 0 0 chr9 14888955 14889077 -127382367 - FLAM_C SINE Alu -18 125 4 22 0 0 0 chr9 14891803 14891825 -127379619 + AT_rich Low_complexity Low_complexity 1 22 0 1766 174 11 27 chr9 14892140 14892514 -127378930 - MER73 LTR ERVL 0 644 277 213 204 0 41 chr9 14892522 14892571 -127378873 + CT-rich Low_complexity Low_complexity 3 49 0 1648 206 33 26 chr9 14892577 14893070 -127378374 - MER54A LTR ERVL -345 398 1 398 287 150 18 chr9 14894215 14894382 -127377062 + MIR SINE MIR 2 190 -72 418 330 74 37 chr9 14894680 14895113 -127376331 - LTR33 LTR ERVL 0 521 73 2354 114 0 6 chr9 14895134 14895449 -127375995 + AluSq SINE Alu 1 313 0 823 151 25 0 chr9 14895495 14895654 -127375790 + LTR24C LTR ERV1 473 635 0 295 167 20 98 chr9 14895654 14895756 -127375688 + L1MA9 LINE L1 5714 5790 -378 2011 179 43 14 chr9 14895798 14896154 -127375290 + L1MA9 LINE L1 5802 6175 -137 336 48 0 0 chr9 14896154 14896196 -127375248 + (CA)n Simple_repeat Simple_repeat 1 42 0 2011 179 43 14 chr9 14896196 14896285 -127375159 + L1MA9 LINE L1 6175 6260 -52 1558 184 89 77 chr9 14896292 14896721 -127374723 + MER21B LTR ERV1 1 434 -429 1657 179 0 0 chr9 14896829 14897091 -127374353 - AluJb SINE Alu -50 262 1 1338 57 0 0 chr9 14897275 14897464 -127373980 + AluY SINE Alu 124 312 0 4937 166 16 4 chr9 14897499 14898501 -127372943 - L1MA4 LINE L1 -817 5329 4316 825 178 19 0 chr9 14898502 14898659 -127372785 + L1MA4 LINE L1 5331 5490 -815 5383 184 30 17 chr9 14898661 14904241 -127367203 + L1PA13 LINE L1 217 5996 -818 2208 108 3 0 chr9 14904241 14904536 -127366908 + AluSc SINE Alu 1 296 -13 5383 184 30 17 chr9 14904536 14905366 -127366078 + L1PA13 LINE L1 5996 6814 0 4165 150 50 21 chr9 14905366 14906162 -127365282 + L1MA4 LINE L1 5476 6298 -2 253 228 18 123 chr9 14906328 14906442 -127365002 + L1MA9 LINE L1 2659 2760 -3386 4421 257 76 45 chr9 14906456 14908769 -127362675 + L1ME3 LINE L1 2919 5303 -843 1374 231 57 33 chr9 14908770 14909138 -127362306 + MLT1D LTR MaLR 123 499 -6 250 221 126 0 chr9 14909186 14909281 -127362163 + L1ME3 LINE L1 5680 5786 -376 2305 106 0 19 chr9 14909353 14909665 -127361779 - AluSq SINE Alu -7 306 1 1604 200 90 65 chr9 14909718 14910209 -127361235 - MLT1D LTR MaLR -2 503 1 617 329 148 34 chr9 14910577 14911231 -127360213 - L2 LINE L2 -1966 1348 620 267 330 94 52 chr9 14911262 14911529 -127359915 - L2 LINE L2 -874 2440 2163 2190 67 11 0 chr9 14911642 14911911 -127359533 - AluY SINE Alu -10 301 30 234 0 0 0 chr9 14911931 14911957 -127359487 + (CA)n Simple_repeat Simple_repeat 1 26 0 3196 197 57 40 chr9 14912300 14912783 -127358661 + L1MA9 LINE L1 3329 3833 -2313 1251 181 165 0 chr9 14912783 14913031 -127358413 + AluJb SINE Alu 1 289 -13 3196 197 57 40 chr9 14913031 14913371 -127358073 + L1MA9 LINE L1 3833 4166 -1980 2457 130 21 108 chr9 14913370 14913937 -127357507 + L1MA9 LINE L1 5410 5928 -384 * 187 127 79 0 chr9 14913942 14914005 -127357439 + (TA)n Simple_repeat Simple_repeat 1 68 0 1724 163 66 11 chr9 14914021 14914383 -127357061 + L1MA9 LINE L1 5931 6312 0 275 333 23 0 chr9 14914631 14914718 -127356726 + MIR SINE MIR 64 152 -110 182 388 24 24 chr9 14916328 14916413 -127355031 + MIR3 SINE MIR 5 89 -119 334 285 120 19 chr9 14916478 14916636 -127354808 + MIR SINE MIR 62 235 -27 498 202 22 0 chr9 14919269 14919358 -127352086 + MER58C DNA MER1_type 125 215 0 1010 233 20 8 chr9 14919503 14919748 -127351696 + L1ME3 LINE L1 5901 6148 -14 441 291 40 38 chr9 14919825 14920183 -127351261 + L1MEc LINE L1 1440 1858 -718 256 246 0 0 chr9 14920282 14920339 -127351105 + L1ME3 LINE L1 6092 6148 -14 2411 190 38 14 chr9 14920416 14920917 -127350527 - LTR53 LTR ERVL -2 517 5 319 177 16 48 chr9 14922392 14922454 -127348990 + MER20 DNA MER1_type 1 60 -159 5247 70 4 3 chr9 14922461 14923152 -127348292 - L1PA7 LINE L1 0 6154 5463 1868 98 0 0 chr9 14923152 14923416 -127348028 - L1P3 LINE L1 -6173 288 25 599 247 0 77 chr9 14923416 14923610 -127347834 + MER20 DNA MER1_type 41 219 0 279 0 0 0 chr9 14924143 14924174 -127347270 + (A)n Simple_repeat Simple_repeat 1 31 0 782 308 82 30 chr9 14925398 14925726 -127345718 - MLT1I LTR MaLR -13 396 52 2031 133 7 3 chr9 14926152 14926454 -127344990 - AluSc SINE Alu -6 303 1 238 313 157 15 chr9 14926841 14927109 -127344335 + L1MC/D LINE L1 5324 5629 -2179 2725 26 3 0 chr9 14927284 14927594 -127343850 + AluY SINE Alu 1 311 0 3177 257 34 12 chr9 14927923 14928867 -127342577 + L1MEc LINE L1 35 999 -5397 2065 123 7 0 chr9 14928898 14929191 -127342253 + AluSx SINE Alu 1 295 -17 2429 237 31 45 chr9 14929369 14929575 -127341869 + L1MB1 LINE L1 3459 3666 -3899 1715 164 13 13 chr9 14929575 14929880 -127341564 + AluJb SINE Alu 1 305 -7 2429 237 31 45 chr9 14929880 14930501 -127340943 + L1MB1 LINE L1 3666 4288 -3277 21 0 0 0 chr9 14930760 14930781 -127340663 + AT_rich Low_complexity Low_complexity 1 21 0 861 246 43 5 chr9 14931340 14931551 -127339893 + MER20 DNA MER1_type 1 219 0 28 0 0 0 chr9 14932173 14932201 -127339243 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 14933838 14933868 -127337576 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6916 58 18 0 chr9 14933869 14935045 -127336399 - L1PA7 LINE L1 -18 6136 4953 13208 89 11 9 chr9 14935047 14936947 -127334497 + L1PA7 LINE L1 3053 4954 -1192 1332 285 86 22 chr9 14937313 14937769 -127333675 - MLT1H LTR MaLR 0 549 65 1111 138 0 0 chr9 14937785 14937937 -127333507 - AluSg/x SINE Alu -26 286 135 241 306 28 0 chr9 14937937 14938009 -127333435 - MLT1H LTR MaLR -472 77 4 184 280 0 20 chr9 14938061 14938111 -127333333 - L2 LINE L2 -15 3298 3250 1891 109 0 0 chr9 14938141 14938389 -127333055 + AluSg SINE Alu 40 287 -23 3567 196 32 2 chr9 14938412 14939572 -127331872 - L1MA8 LINE L1 -291 6000 4805 740 261 34 25 chr9 14939742 14939980 -127331464 + MIR SINE MIR 12 251 -11 6146 205 77 7 chr9 14940141 14941636 -127329808 + L1MB1 LINE L1 5047 6646 -919 2173 147 61 7 chr9 14941642 14942050 -127329394 + L1MB1 LINE L1 7158 7587 0 323 271 146 21 chr9 14942236 14942380 -127329064 + MIR SINE MIR 97 258 -4 321 248 71 26 chr9 14942621 14942734 -127328710 - MLT1L LTR MaLR -71 544 427 2064 142 0 0 chr9 14942750 14943046 -127328398 - AluSx SINE Alu -16 296 1 1562 221 82 16 chr9 14944511 14944949 -127326495 - MLT1C LTR MaLR 0 467 1 530 306 15 20 chr9 14945241 14945437 -127326007 - L2 LINE L2 -189 3083 2889 264 316 106 80 chr9 14946038 14946275 -127325169 + L2 LINE L2 3030 3272 0 226 260 13 13 chr9 14948560 14948637 -127322807 - L1MC4 LINE L1 -40 8002 7926 227 91 0 45 chr9 14948649 14948693 -127322751 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 2298 243 124 75 chr9 14948693 14950076 -127321368 - L1MC4 LINE L1 -133 7909 6460 609 165 39 0 chr9 14950928 14951031 -127320413 - Tigger1 DNA MER2_type 0 2418 2312 12533 137 23 19 chr9 14951032 14951140 -127320304 - Tigger1 DNA MER2_type -348 2070 1964 1875 119 0 11 chr9 14951140 14951417 -127320027 - AluSx SINE Alu 0 312 39 12533 137 23 19 chr9 14951417 14953369 -127318075 - Tigger1 DNA MER2_type -454 1964 2 615 305 114 39 chr9 14954978 14955386 -127316058 + L2 LINE L2 2812 3261 -52 2098 142 5 45 chr9 14955386 14955766 -127315678 - MLT1A1 LTR MaLR 0 365 1 615 305 114 39 chr9 14955766 14955822 -127315622 + L2 LINE L2 3261 3311 -2 1393 197 42 39 chr9 14956667 14957006 -127314438 + Tigger7 DNA MER2_type 1 2491 0 245 308 34 60 chr9 14957013 14957130 -127314314 - MIR3 SINE MIR -4 204 91 198 0 0 0 chr9 14957390 14957412 -127314032 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2069 129 60 20 chr9 14958080 14958429 -127313015 - THE1B LTR MaLR 0 364 2 197 305 95 0 chr9 14958451 14958546 -127312898 - L2 LINE L2 -1 3271 3168 504 189 36 18 chr9 14958622 14958733 -127312711 + L1ME3 LINE L1 6020 6132 -30 2472 54 0 10 chr9 14959032 14959327 -127312117 + AluY SINE Alu 2 293 -18 237 251 70 87 chr9 14961241 14961410 -127310034 + MIR SINE MIR 21 192 -63 252 281 86 55 chr9 14961957 14962085 -127309359 + MIR SINE MIR 40 171 -91 308 179 80 19 chr9 14962228 14962390 -127309054 + (TA)n Simple_repeat Simple_repeat 1 172 0 5949 172 18 4 chr9 14962484 14963677 -127307767 - L1MC1 LINE L1 -6 6396 5187 * 19822 192 31 14 chr9 14963666 14966579 -127304865 - L1PA13 LINE L1 0 6814 3952 450 0 0 0 chr9 14966579 14966629 -127304815 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 19822 192 31 14 chr9 14966629 14970391 -127301053 - L1PA13 LINE L1 -2862 3952 2 2766 260 41 3 chr9 14970407 14971281 -127300163 - L1MC1 LINE L1 -1010 5205 4295 4288 40 4 0 chr9 14971281 14971803 -127299641 - L1PA4 LINE L1 -1 6154 5631 9006 27 7 0 chr9 14971803 14973108 -127298336 + L1PA4 LINE L1 4298 5607 -548 7438 241 33 15 chr9 14973109 14975518 -127295926 - L1MC1 LINE L1 -1898 4317 1914 292 318 40 0 chr9 14976197 14976323 -127295121 + MIR SINE MIR 88 218 -44 309 330 11 0 chr9 14976842 14976936 -127294508 + L2 LINE L2 3217 3311 -2 300 345 40 7 chr9 14976977 14977125 -127294319 - MIR SINE MIR -73 189 37 447 207 198 0 chr9 14977125 14977236 -127294208 + MER63 DNA MER1_type 1 759 -77 223 377 85 0 chr9 14978390 14978520 -127292924 + MIR3 SINE MIR 39 179 -29 594 254 169 0 chr9 14978923 14979100 -127292344 - MIR SINE MIR -6 256 50 431 319 108 11 chr9 14980641 14980790 -127290654 - MIR SINE MIR 0 262 90 7610 22 0 0 chr9 14980790 14981863 -127289581 - L1PA3 LINE L1 -1 6154 5093 431 319 108 11 chr9 14981863 14981898 -127289546 - MIR SINE MIR -172 90 60 435 198 0 41 chr9 14982795 14982967 -127288477 + (TA)n Simple_repeat Simple_repeat 2 166 0 415 236 12 6 chr9 14982998 14983322 -127288122 + (TA)n Simple_repeat Simple_repeat 1 326 0 917 221 47 50 chr9 14983337 14983596 -127287848 - L1ME3A LINE L1 -10 6160 5901 1448 151 62 127 chr9 14983596 14983967 -127287477 + MER7A DNA MER2_type 1 345 -1 917 221 47 50 chr9 14983967 14984006 -127287438 - L1ME3A LINE L1 -269 5901 5863 336 97 0 0 chr9 14984312 14984361 -127287083 + Alu SINE Alu 1 44 -256 1468 113 0 14 chr9 14984361 14984573 -127286871 + AluSg/x SINE Alu 90 298 -12 26 30 0 0 chr9 14984832 14984865 -127286579 + AT_rich Low_complexity Low_complexity 1 33 0 2098 125 46 25 chr9 14984927 14985294 -127286150 + THE1C LTR MaLR 1 375 0 226 322 101 20 chr9 14985986 14986135 -127285309 - MER117 DNA MER1_type -35 162 2 2620 178 36 27 chr9 14986632 14987215 -127284229 + L1MC3 LINE L1 7080 7667 -118 200 309 55 55 chr9 14987427 14987537 -127283907 + MIR3 SINE MIR 98 207 -1 369 62 0 0 chr9 14988120 14988168 -127283276 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 213 121 0 0 chr9 14988249 14988282 -127283162 + (TA)n Simple_repeat Simple_repeat 2 34 0 215 225 0 67 chr9 14988834 14988923 -127282521 + GA-rich Low_complexity Low_complexity 1 83 0 210 385 67 0 chr9 14989625 14989729 -127281715 + L2 LINE L2 3152 3262 -10 293 307 57 0 chr9 14990511 14990599 -127280845 - L2 LINE L2 0 3313 3221 759 296 120 29 chr9 14991217 14991568 -127279876 - MLT1I LTR MaLR -11 398 16 184 282 0 0 chr9 14993596 14993635 -127277809 - L2 LINE L2 -12 3301 3263 * 226 268 98 102 chr9 14993603 14993849 -127277595 - MIR SINE MIR -13 249 5 702 294 24 37 chr9 14993888 14994265 -127277179 + L1M4 LINE L1 3521 3892 -2254 2519 149 38 5 chr9 14994401 14994882 -127276562 + L1MA6 LINE L1 5219 5716 -584 631 191 0 8 chr9 14994882 14995011 -127276433 + L1MA6 LINE L1 6170 6299 -1 2519 149 38 5 chr9 14995011 14995025 -127276419 + L1MA6 LINE L1 5716 5728 -572 300 306 103 41 chr9 14995066 14995308 -127276136 + L1M4 LINE L1 4113 4369 -1777 267 222 156 11 chr9 14995486 14995576 -127275868 + L2 LINE L2 3195 3297 -16 339 306 66 73 chr9 14995597 14995777 -127275667 + L1M4 LINE L1 4748 4927 -1219 2366 77 0 17 chr9 14995777 14996077 -127275367 + AluY SINE Alu 1 295 -16 339 306 66 73 chr9 14996077 14996184 -127275260 + L1M4 LINE L1 4927 5033 -1113 293 274 122 43 chr9 14997088 14997252 -127274192 + MIR SINE MIR 7 183 -79 234 281 135 0 chr9 14998208 14998304 -127273140 - L2 LINE L2 0 3313 3205 407 303 61 40 chr9 14998605 14998803 -127272641 - MIR SINE MIR -18 244 43 462 360 32 28 chr9 14999445 14999698 -127271746 + MIR SINE MIR 8 261 -1 398 223 39 10 chr9 15001928 15002031 -127269413 - MER58 DNA MER1_type -57 284 179 753 267 63 10 chr9 15002081 15002384 -127269060 - L1ME LINE L1 -297 5824 5506 223 280 70 108 chr9 15003573 15003759 -127267685 + L2 LINE L2 2699 2877 -437 411 128 0 51 chr9 15003861 15003939 -127267505 + L1MC2 LINE L1 6247 6320 -24 259 254 17 0 chr9 15004361 15004420 -127267024 - MIR SINE MIR -2 260 201 681 223 137 25 chr9 15004741 15004938 -127266506 + MIR SINE MIR 23 241 -21 2016 134 10 22 chr9 15005397 15005710 -127265734 - AluSc SINE Alu 0 309 1 615 219 152 19 chr9 15006061 15006317 -127265127 + MER102b DNA MER1_type 51 340 -1 240 299 39 0 chr9 15006643 15006720 -127264724 + MIR SINE MIR 109 188 -74 297 317 89 0 chr9 15007450 15007551 -127263893 + L2 LINE L2 3199 3308 -5 1023 171 0 43 chr9 15007638 15007814 -127263630 - AluJo SINE Alu -8 304 135 1553 181 0 55 chr9 15007814 15007976 -127263468 - AluJo SINE Alu -20 292 153 1902 140 42 3 chr9 15007976 15008261 -127263183 - AluSx SINE Alu -16 296 1 1553 181 0 55 chr9 15008261 15008407 -127263037 - AluJo SINE Alu -159 153 1 21 0 0 0 chr9 15008852 15008873 -127262571 + AT_rich Low_complexity Low_complexity 1 21 0 2011 125 29 0 chr9 15009383 15009663 -127261781 - AluSx SINE Alu -24 288 1 1253 260 108 39 chr9 15010112 15010323 -127261121 - MLT1G LTR MaLR -18 572 377 8588 104 16 41 chr9 15010323 15011643 -127259801 - HSMAR1 DNA Mariner 0 1287 1 1253 260 108 39 chr9 15011643 15011966 -127259478 - MLT1G LTR MaLR -213 377 1 396 306 73 8 chr9 15012280 15012528 -127258916 + L1ME4a LINE L1 5604 5867 -254 31 26 0 0 chr9 15012734 15012772 -127258672 + AT_rich Low_complexity Low_complexity 1 38 0 218 160 0 40 chr9 15012848 15012898 -127258546 + A-rich Low_complexity Low_complexity 3 50 0 1340 236 48 37 chr9 15013068 15013530 -127257914 + MLT1C LTR MaLR 1 467 0 44 0 0 0 chr9 15014109 15014153 -127257291 + AT_rich Low_complexity Low_complexity 1 44 0 2007 144 3 0 chr9 15014252 15014543 -127256901 - AluSx SINE Alu -13 299 8 319 247 20 25 chr9 15014603 15014793 -127256651 - L1ME LINE L1 -303 5818 5562 1245 212 89 9 chr9 15014883 15015199 -127256245 - MER58B DNA MER1_type 0 341 1 21 0 0 0 chr9 15016982 15017003 -127254441 + AT_rich Low_complexity Low_complexity 1 21 0 1623 170 71 14 chr9 15019303 15019585 -127251859 - AluJb SINE Alu -14 298 1 442 258 25 42 chr9 15019592 15019712 -127251732 - MER5A DNA MER1_type -11 178 61 7275 67 9 1 chr9 15019721 15021455 -127249989 - L1PA6 LINE L1 0 6154 4395 1053 155 0 6 chr9 15025200 15025361 -127246083 - AluSq SINE Alu -153 160 1 240 278 0 0 chr9 15025900 15025954 -127245490 + GA-rich Low_complexity Low_complexity 4 57 0 242 324 0 14 chr9 15026210 15026284 -127245160 - MER5B DNA MER1_type -80 98 26 325 296 111 25 chr9 15028475 15028654 -127242790 + MIR SINE MIR 41 234 -28 326 258 151 63 chr9 15030027 15030186 -127241258 + L2 LINE L2 3137 3309 -4 265 283 131 21 chr9 15030274 15030419 -127241025 - MIR SINE MIR -53 209 49 2499 161 11 36 chr9 15032211 15032683 -127238761 + MLT1C LTR MaLR 5 464 -3 295 267 59 59 chr9 15033252 15033439 -127238005 + LTR16A LTR ERVL 1 183 -267 1091 374 50 4 chr9 15033439 15034266 -127237178 - HERV16 LTR ERVL -776 4988 4124 318 296 70 0 chr9 15034291 15034406 -127237038 - HERV16 LTR ERVL -2020 3465 3343 395 282 34 0 chr9 15034591 15034708 -127236736 - HERV16 LTR ERVL -2496 3158 3038 1573 328 52 20 chr9 15035045 15036294 -127235150 - HERV16 LTR ERVL -2649 3005 1709 264 215 215 0 chr9 15036804 15036883 -127234561 - HERV16 LTR ERVL -3967 1029 934 1086 324 45 22 chr9 15037107 15037662 -127233782 - HERV16 LTR ERVL -4316 680 110 986 244 136 12 chr9 15037662 15037994 -127233450 - MLT1A2 LTR MaLR -1 373 1 1086 324 45 22 chr9 15037994 15038015 -127233429 - HERV16 LTR ERVL -4886 110 91 882 283 75 44 chr9 15038073 15038486 -127232958 - LTR16A LTR ERVL -8 442 17 240 273 0 30 chr9 15039969 15040035 -127231409 + L2 LINE L2 2230 2293 -1021 206 400 57 0 chr9 15040108 15040213 -127231231 + L2 LINE L2 2564 2674 -640 1468 107 0 0 chr9 15040297 15040484 -127230960 + AluY SINE Alu 1 187 -124 324 67 0 33 chr9 15040488 15040548 -127230896 + AluSp/q SINE Alu 246 303 0 1342 177 61 49 chr9 15040872 15041326 -127230118 + MLT2B3 LTR ERVL 1 554 0 306 0 0 0 chr9 15041341 15041375 -127230069 + (T)n Simple_repeat Simple_repeat 1 34 0 344 188 9 27 chr9 15044016 15044128 -127227316 + (TA)n Simple_repeat Simple_repeat 2 111 0 616 348 45 44 chr9 15044325 15044880 -127226564 + L2 LINE L2 2720 3276 -37 1946 142 0 3 chr9 15045329 15045617 -127225827 - AluSx SINE Alu -25 287 1 182 194 0 0 chr9 15045915 15045946 -127225498 + L2 LINE L2 3240 3270 -2 182 234 0 109 chr9 15046096 15046160 -127225284 - L3 LINE CR1 -124 1453 1397 323 301 83 19 chr9 15046728 15046884 -127224560 - MIR SINE MIR -6 256 91 198 0 0 0 chr9 15047619 15047641 -127223803 + (CA)n Simple_repeat Simple_repeat 1 22 0 289 261 9 18 chr9 15048764 15048875 -127222569 - L1ME2 LINE L1 -216 5948 5839 199 273 0 61 chr9 15050070 15050136 -127221308 - L2 LINE L2 -1 3271 3210 393 276 147 6 chr9 15051490 15051660 -127219784 - MIR SINE MIR -3 259 66 12528 136 40 40 chr9 15051963 15052487 -127218957 + Tigger1 DNA MER2_type 52 575 -1843 4804 109 18 20 chr9 15052487 15052814 -127218630 - L1MA2 LINE L1 -1 6303 5977 1315 120 65 5 chr9 15052814 15053031 -127218413 - MER30 DNA MER1_type 0 230 1 4804 109 18 20 chr9 15053031 15053489 -127217955 - L1MA2 LINE L1 -327 5977 5520 12528 136 40 40 chr9 15053489 15055123 -127216321 + Tigger1 DNA MER2_type 575 2211 -207 1532 146 0 0 chr9 15055123 15055336 -127216108 + AluSx SINE Alu 24 236 -76 12528 136 40 40 chr9 15055336 15055544 -127215900 + Tigger1 DNA MER2_type 2211 2418 0 391 300 31 86 chr9 15056529 15056819 -127214625 - L1ME4a LINE L1 -214 5907 5634 1878 152 44 0 chr9 15056893 15057189 -127214255 - AluSx SINE Alu -3 309 1 230 316 0 21 chr9 15060144 15060239 -127211205 + GA-rich Low_complexity Low_complexity 6 98 0 378 0 0 0 chr9 15060410 15060452 -127210992 + (CA)n Simple_repeat Simple_repeat 1 42 0 910 179 112 45 chr9 15060817 15061040 -127210404 - MER8 DNA MER2_type 0 239 2 212 364 0 0 chr9 15061509 15061575 -127209869 - MIR SINE MIR -67 141 76 565 200 7 22 chr9 15061683 15061818 -127209626 + L1MB5 LINE L1 6041 6173 -1 198 294 0 0 chr9 15062175 15062226 -127209218 + L2 LINE L2 3250 3300 -13 877 182 21 74 chr9 15062607 15062730 -127208714 - L1MB1 LINE L1 -242 5926 5821 1771 167 3 33 chr9 15062730 15063036 -127208408 + AluSx SINE Alu 1 297 -15 877 182 21 74 chr9 15063036 15063154 -127208290 - L1MB1 LINE L1 -347 5821 5698 1324 139 0 18 chr9 15063168 15063391 -127208053 + THE1B LTR MaLR 1 219 -145 15409 133 20 57 chr9 15063410 15066451 -127204993 + L1PA7 LINE L1 12 2939 -3207 7040 39 15 1 chr9 15066451 15067312 -127204132 + L1PA4 LINE L1 5274 6155 0 * 18030 71 11 7 chr9 15067305 15070537 -127200907 + L1PA7 LINE L1 2913 6153 -1 777 114 18 1 chr9 15070645 15070780 -127200664 + THE1A LTR MaLR 220 355 0 1468 217 50 29 chr9 15071148 15071591 -127199853 + MER63C DNA MER1_type 1 452 -478 548 173 62 6 chr9 15071609 15071771 -127199673 + MER63C DNA MER1_type 675 845 -85 475 326 88 19 chr9 15072255 15072574 -127198870 + L1M4 LINE L1 3604 3944 -2202 785 130 12 80 chr9 15072704 15072866 -127198578 + MER5A DNA MER1_type 3 153 -36 1642 213 27 12 chr9 15072867 15073275 -127198169 - MER63C DNA MER1_type 0 930 517 794 274 42 9 chr9 15073275 15073490 -127197954 - MER58A DNA MER1_type -2 222 1 * 1081 234 54 24 chr9 15073490 15073847 -127197597 - MER63C DNA MER1_type -409 521 154 455 311 73 43 chr9 15073876 15074271 -127197173 + L1M4 LINE L1 4142 4548 -1598 505 301 96 50 chr9 15074707 15075325 -127196119 - L1MC4a LINE L1 -1833 5975 5330 413 339 94 29 chr9 15075830 15076213 -127195231 - L2 LINE L2 -259 3054 2653 417 294 54 20 chr9 15076548 15076779 -127194665 - MLT1J1 LTR MaLR -228 283 4 414 273 41 16 chr9 15076804 15076925 -127194519 - MIR SINE MIR -130 132 9 851 240 62 0 chr9 15077045 15077253 -127194191 + MER58A DNA MER1_type 4 224 0 1206 236 62 23 chr9 15079636 15080025 -127191419 - MER74B LTR ERVL -77 545 142 364 363 44 0 chr9 15080412 15080572 -127190872 + MIR SINE MIR 29 195 -67 180 263 165 23 chr9 15081688 15081821 -127189623 + L3 LINE CR1 1105 1256 -321 644 327 125 38 chr9 15085940 15086872 -127184572 + L2 LINE L2 2233 3272 0 1059 264 132 2 chr9 15087632 15088026 -127183418 - LTR16A1 LTR ERVL -12 445 1 2071 110 24 81 chr9 15090361 15090521 -127180923 + THE1B LTR MaLR 4 172 -192 2205 126 0 0 chr9 15090521 15090815 -127180629 - AluSp SINE Alu -14 299 6 2071 110 24 81 chr9 15090815 15091037 -127180407 + THE1B LTR MaLR 172 364 0 456 279 207 8 chr9 15091138 15091389 -127180055 - L1MC/D LINE L1 -2168 5640 5340 1977 203 68 0 chr9 15092131 15092530 -127178914 + MSTB LTR MaLR 1 426 0 8054 190 18 11 chr9 15092530 15094165 -127177279 + MSTB-int LTR MaLR 1 1646 -5 2211 182 65 2 chr9 15094170 15094571 -127176873 + MSTB LTR MaLR 1 426 0 457 174 20 20 chr9 15095546 15095644 -127175800 - MLT1A1 LTR MaLR -267 98 1 562 301 76 10 chr9 15095985 15096274 -127175170 + HAL1 LINE L1 13 320 -2187 408 213 19 38 chr9 15096822 15096982 -127174462 - L1MC4 LINE L1 -195 7847 7691 226 254 261 8 chr9 15097477 15097611 -127173833 + MIR SINE MIR 48 215 -47 332 313 67 17 chr9 15098411 15098564 -127172880 - L1MEd LINE L1 -3324 2805 2661 1148 247 0 8 chr9 15098564 15098803 -127172641 + MER8 DNA MER2_type 1 237 -2 332 313 67 17 chr9 15098803 15098994 -127172450 - L1MEd LINE L1 -3468 2661 2444 233 331 38 12 chr9 15099644 15099804 -127171640 - HAL1 LINE L1 -937 1570 1407 1795 290 91 32 chr9 15099809 15100942 -127170502 - L1MEd LINE L1 -4862 1257 58 6800 129 52 5 chr9 15101426 15102602 -127168842 - Tigger3b DNA MER2_type 0 1231 1 1135 154 10 5 chr9 15102767 15102968 -127168476 + L1PA16 LINE L1 5949 6150 -16 1567 206 7 17 chr9 15103032 15103324 -127168120 + AluJo SINE Alu 1 289 -23 644 348 165 30 chr9 15103822 15104694 -127166750 + L2 LINE L2 1768 2757 -557 250 301 12 24 chr9 15104719 15104812 -127166632 - MER5A DNA MER1_type -73 116 14 265 392 97 17 chr9 15104963 15105139 -127166305 + L2 LINE L2 2902 3091 -181 192 336 42 17 chr9 15105351 15105470 -127165974 + MIR3 SINE MIR 46 167 -41 686 210 51 27 chr9 15105487 15105744 -127165700 - L1MC5 LINE L1 -34 7927 7665 2092 164 11 14 chr9 15105864 15106229 -127165215 + THE1B LTR MaLR 1 364 0 10354 106 29 29 chr9 15106229 15107808 -127163636 + THE1B-int LTR MaLR 1 1579 -1 1940 137 84 23 chr9 15107809 15108152 -127163292 + THE1B LTR MaLR 1 364 0 247 131 66 49 chr9 15108397 15108458 -127162986 + MLT1I LTR MaLR 316 377 -32 3221 238 40 23 chr9 15108560 15109559 -127161885 - L1ME2 LINE L1 -12 6152 5134 262 197 70 14 chr9 15109553 15109624 -127161820 - L1MD1 LINE L1 -94 6148 6074 * 24 53 0 0 chr9 15109631 15109669 -127161775 + AT_rich Low_complexity Low_complexity 1 38 0 1973 247 115 37 chr9 15109773 15111249 -127160195 + L1ME1 LINE L1 4577 6161 -5 478 190 10 20 chr9 15111942 15112042 -127159402 - MIR SINE MIR -70 192 94 2681 10 3 0 chr9 15112649 15112944 -127158500 + AluY SINE Alu 1 296 -15 342 223 18 9 chr9 15113161 15113273 -127158171 + GA-rich Low_complexity Low_complexity 3 115 0 277 316 59 37 chr9 15113362 15113498 -127157946 + MIR SINE MIR 78 216 -46 198 0 0 0 chr9 15114710 15114732 -127156712 + (CAT)n Simple_repeat Simple_repeat 2 23 0 426 314 38 35 chr9 15115102 15115310 -127156134 + MIR SINE MIR 5 216 -46 2046 138 21 13 chr9 15115315 15115698 -127155746 - Charlie5 DNA MER1_type 0 2619 2234 682 158 0 0 chr9 15115702 15115816 -127155628 - MER3 DNA MER1_type -41 168 55 233 213 21 0 chr9 15115818 15115865 -127155579 + MIR SINE MIR 203 250 -12 5633 163 71 17 chr9 15116274 15118290 -127153154 + L1MA7 LINE L1 4133 6258 -33 1407 189 84 0 chr9 15120559 15120834 -127150610 - LTR40a LTR ERVL 0 519 222 25 51 0 0 chr9 15121058 15121097 -127150347 + AT_rich Low_complexity Low_complexity 1 39 0 388 313 110 57 chr9 15121167 15121394 -127150050 - MIR SINE MIR -23 239 1 2717 107 8 0 chr9 15121677 15122062 -127149382 + L1PA15 LINE L1 5773 6160 -5 2655 22 0 22 chr9 15123394 15123712 -127147732 + AluY SINE Alu 1 311 0 309 313 156 36 chr9 15124071 15124263 -127147181 - MIR SINE MIR -46 216 2 567 296 60 28 chr9 15125200 15125416 -127146028 - MIR SINE MIR -11 251 29 336 230 55 145 chr9 15126731 15126931 -127144513 - MIR SINE MIR 0 262 81 228 288 68 83 chr9 15127099 15127231 -127144213 - L2 LINE L2 0 3272 3143 303 294 184 28 chr9 15127443 15127661 -127143783 - MIR SINE MIR -5 257 6 1821 209 9 4 chr9 15128001 15128349 -127143095 - MLT1A1 LTR MaLR 0 365 1 229 338 0 0 chr9 15129374 15129451 -127141993 - MIR SINE MIR -6 256 180 228 325 63 8 chr9 15129869 15129995 -127141449 + MER5A DNA MER1_type 13 145 -44 1259 276 147 58 chr9 15130319 15131487 -127139957 - HAL1 LINE L1 -6 2501 1230 280 304 95 48 chr9 15131831 15131999 -127139445 + MER5B DNA MER1_type 2 177 -1 246 241 277 27 chr9 15134008 15134120 -127137324 - MIR SINE MIR -70 192 53 22 35 0 0 chr9 15134245 15134274 -127137170 + AT_rich Low_complexity Low_complexity 1 29 0 201 214 0 36 chr9 15135583 15135639 -127135805 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 342 303 76 14 chr9 15135740 15135885 -127135559 - MIR SINE MIR -61 201 48 2304 65 3 3 chr9 15137287 15137580 -127133864 + AluY SINE Alu 19 311 0 293 170 0 0 chr9 15137610 15137663 -127133781 - L1MB7 LINE L1 -65 6119 6067 533 239 83 61 chr9 15137666 15137930 -127133514 + MER113 DNA MER1_type? 131 400 -121 441 258 148 105 chr9 15138180 15138409 -127133035 + MLT1G LTR MaLR 348 581 -9 439 281 7 22 chr9 15138426 15138561 -127132883 - MER94 DNA DNA 0 134 2 22 0 0 0 chr9 15138754 15138776 -127132668 + AT_rich Low_complexity Low_complexity 1 22 0 780 239 53 5 chr9 15139044 15139232 -127132212 - MIR SINE MIR -50 212 16 7301 173 55 20 chr9 15139644 15142140 -127129304 - L1MA5 LINE L1 0 7362 4779 2391 159 14 42 chr9 15142140 15142529 -127128915 - MSTC LTR MaLR -2 426 49 1688 167 35 0 chr9 15142529 15142816 -127128628 + AluJb SINE Alu 1 297 -15 2391 159 14 42 chr9 15142816 15142860 -127128584 - MSTC LTR MaLR -379 49 5 2327 203 28 4 chr9 15142864 15143371 -127128073 - L1MA5 LINE L1 -2423 4785 4267 854 192 13 6 chr9 15143417 15143573 -127127871 + Tigger1 DNA MER2_type 1 157 -2261 * 1100 143 64 0 chr9 15143562 15143765 -127127679 + Tigger1 DNA MER2_type 2202 2417 -1 4104 189 33 42 chr9 15143767 15144652 -127126792 - L1MA5 LINE L1 -2988 4220 3347 2315 48 48 10 chr9 15144652 15144946 -127126498 - AluY SINE Alu -4 307 3 4104 189 33 42 chr9 15144946 15145257 -127126187 - L1MA5 LINE L1 -3861 3347 3035 3520 173 80 1 chr9 15145267 15145932 -127125512 - Tigger1 DNA MER2_type 0 2418 1702 1274 142 28 5 chr9 15145942 15146154 -127125290 - Tigger1 DNA MER2_type -2178 240 24 2700 175 55 18 chr9 15146159 15146354 -127125090 - L1MA5 LINE L1 -4186 3023 2837 1812 165 7 16 chr9 15146354 15146663 -127124781 - AluJb SINE Alu -4 308 3 2700 175 55 18 chr9 15146663 15147015 -127124429 - L1MA5 LINE L1 -4372 2837 2456 1845 283 109 41 chr9 15147009 15148005 -127123439 - L1MA5 LINE L1 -5525 1684 1 * 1990 128 3 7 chr9 15148095 15148383 -127123061 + AluSx SINE Alu 1 287 -25 655 245 131 38 chr9 15148841 15149078 -127122366 - MIR SINE MIR 0 262 4 21 36 0 0 chr9 15149712 15149740 -127121704 + AT_rich Low_complexity Low_complexity 1 28 0 440 257 92 18 chr9 15152397 15152562 -127118882 - MIR SINE MIR -44 218 47 3984 87 0 9 chr9 15152717 15153268 -127118176 + L1PA7 LINE L1 5609 6154 0 362 360 74 0 chr9 15153949 15154124 -127117320 + MIR SINE MIR 1 188 -74 467 304 91 42 chr9 15154158 15154453 -127116991 + MLT1J LTR MaLR 17 297 -149 531 304 90 36 chr9 15154760 15155148 -127116296 + MLT1J2 LTR MaLR 17 425 -25 11912 201 51 24 chr9 15155902 15160618 -127110826 + L1M3 LINE L1 17 4900 -1519 7268 47 0 1 chr9 15160618 15161547 -127109897 + L1PA6 LINE L1 5222 6149 -5 11912 201 51 24 chr9 15161547 15162346 -127109098 + L1M3 LINE L1 4900 5676 -743 869 145 8 0 chr9 15162347 15162471 -127108973 + FLAM_C SINE Alu 1 125 -18 31 0 0 0 chr9 15162471 15162502 -127108942 + AT_rich Low_complexity Low_complexity 1 31 0 196 286 214 0 chr9 15162654 15162766 -127108678 - MIR SINE MIR 0 262 127 316 311 54 24 chr9 15162779 15162946 -127108498 - MIR SINE MIR -60 202 31 2749 216 10 0 chr9 15163717 15164336 -127107108 - L1P LINE L1 -3048 3098 2474 2157 129 3 0 chr9 15164401 15164712 -127106732 + AluSx SINE Alu 1 312 0 185 326 22 45 chr9 15165098 15165187 -127106257 - L2 LINE L2 0 3272 3186 251 285 38 111 chr9 15165621 15165856 -127105588 - MIR SINE MIR -28 234 17 5562 122 20 2 chr9 15166264 15167109 -127104335 + L1PA15 LINE L1 5294 6153 -12 622 298 57 20 chr9 15171589 15171837 -127099607 - MIR SINE MIR -1 261 5 547 276 138 0 chr9 15173078 15173259 -127098185 - MIR SINE MIR 0 262 57 1570 125 153 3 chr9 15173775 15174070 -127097374 + MER44D DNA MER2_type 1 609 0 938 209 6 11 chr9 15174166 15174536 -127096908 + GA-rich Low_complexity Low_complexity 1 368 0 535 264 0 0 chr9 15175186 15175307 -127096137 - MER94 DNA DNA -10 124 4 322 275 69 15 chr9 15175379 15175510 -127095934 + MIR SINE MIR 75 212 -50 204 398 79 45 chr9 15177093 15177513 -127093931 + L2 LINE L2 2831 3264 -8 202 300 38 25 chr9 15177540 15177620 -127093824 + MIR3 SINE MIR 9 89 -119 2234 248 45 45 chr9 15177629 15178477 -127092967 + L1M4 LINE L1 3356 4203 -1943 7114 50 7 0 chr9 15178637 15180212 -127091232 + L1PA5 LINE L1 4568 6148 -6 418 204 21 175 chr9 15180692 15180932 -127090512 - MIR SINE MIR -6 256 54 332 272 15 92 chr9 15180953 15181159 -127090285 + L1MC5 LINE L1 7736 7925 -36 1801 57 0 4 chr9 15181777 15182004 -127089440 - AluY SINE Alu 0 311 86 235 251 166 91 chr9 15182110 15182297 -127089147 + MIR SINE MIR 28 228 -34 2042 199 18 0 chr9 15183848 15184304 -127087140 - MLT2B1 LTR ERVL 0 520 5 296 397 55 0 chr9 15184388 15184534 -127086910 + MER91A DNA MER1_type 21 174 -22 489 152 45 15 chr9 15185014 15185216 -127086228 - MER58B DNA MER1_type 0 341 72 3554 123 53 10 chr9 15185226 15185555 -127085889 - L1PB4 LINE L1 -20 6136 5770 473 31 0 16 chr9 15185555 15185619 -127085825 + (TG)n Simple_repeat Simple_repeat 2 64 0 3554 123 53 10 chr9 15185619 15185873 -127085571 - L1PB4 LINE L1 -386 5770 5528 245 163 47 0 chr9 15185876 15185919 -127085525 - MER58B DNA MER1_type -253 88 44 604 270 72 14 chr9 15186207 15186506 -127084938 + MLT1J2 LTR MaLR 1 332 -118 206 163 61 0 chr9 15186975 15187024 -127084420 - L3 LINE CR1 -334 1243 1192 437 364 61 4 chr9 15187476 15187707 -127083737 + MIR SINE MIR 19 262 0 * 439 253 101 13 chr9 15187672 15187830 -127083614 - MIR SINE MIR -79 183 12 636 221 101 40 chr9 15188451 15188627 -127082817 + MIR SINE MIR 31 222 -40 2199 119 0 0 chr9 15188627 15188929 -127082515 - AluSq SINE Alu -11 302 1 636 221 101 40 chr9 15188929 15188951 -127082493 + MIR SINE MIR 222 241 -21 207 127 0 56 chr9 15189560 15189631 -127081813 + (TTA)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr9 15190039 15190059 -127081385 + (A)n Simple_repeat Simple_repeat 1 20 0 359 377 41 0 chr9 15191702 15191848 -127079596 + L2 LINE L2 3121 3272 0 23 0 0 0 chr9 15193708 15193731 -127077713 + AT_rich Low_complexity Low_complexity 1 23 0 234 281 78 0 chr9 15194925 15194989 -127076455 + MIR3 SINE MIR 114 182 -26 1436 105 0 0 chr9 15195337 15195528 -127075916 - LOR1a LTR ERV1 0 497 307 288 307 11 0 chr9 15195985 15196073 -127075371 - MIR3 SINE MIR 0 208 120 28 61 0 0 chr9 15196497 15196546 -127074898 + AT_rich Low_complexity Low_complexity 1 49 0 2247 68 16 48 chr9 15196606 15196916 -127074528 - AluY SINE Alu -11 300 1 22 0 0 0 chr9 15197504 15197526 -127073918 + AT_rich Low_complexity Low_complexity 1 22 0 339 204 91 53 chr9 15198265 15198397 -127073047 - MIR SINE MIR -15 247 111 2079 128 0 0 chr9 15198435 15198756 -127072688 - AluSx SINE Alu 0 324 4 257 273 99 16 chr9 15199289 15199386 -127072058 - MIR SINE MIR -3 259 149 1731 164 55 6 chr9 15199386 15199716 -127071728 - MER7A DNA MER2_type -2 344 1 257 273 99 16 chr9 15199716 15199739 -127071705 - MIR SINE MIR -113 149 129 269 83 0 0 chr9 15200530 15200566 -127070878 + U2 snRNA snRNA 1 36 -152 2628 201 93 70 chr9 15200584 15201463 -127069981 + L1MC4 LINE L1 7058 7956 -86 333 182 0 65 chr9 15202353 15202430 -127069014 - L1ME4a LINE L1 -76 6045 5974 219 139 0 0 chr9 15203165 15203201 -127068243 + (CA)n Simple_repeat Simple_repeat 2 37 0 633 248 50 0 chr9 15203772 15203913 -127067531 - MER45A DNA AcHobo -30 148 1 366 218 73 17 chr9 15205458 15205637 -127065807 + MER113 DNA MER1_type? 7 195 -326 1288 54 0 0 chr9 15207583 15207750 -127063694 - L1P LINE L1 -5358 788 622 238 139 0 0 chr9 15207750 15207786 -127063658 + HSMAR1 DNA Mariner 417 452 -835 337 330 126 41 chr9 15208240 15208906 -127062538 + L2 LINE L2 2499 3306 -7 * 777 265 120 8 chr9 15208881 15209115 -127062329 - MIR SINE MIR 0 262 3 205 205 0 0 chr9 15209117 15209156 -127062288 + L2 LINE L2 3272 3310 -3 446 287 0 0 chr9 15210048 15210149 -127061295 - MER5A DNA MER1_type -80 109 9 21 0 0 0 chr9 15210539 15210560 -127060884 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr9 15211112 15211158 -127060286 + (TG)n Simple_repeat Simple_repeat 1 46 0 756 284 22 18 chr9 15212623 15212852 -127058592 - MIR SINE MIR -17 245 16 3496 152 2 2 chr9 15214842 15215390 -127056054 + MER44D DNA MER2_type 3 605 0 600 257 26 0 chr9 15216290 15216442 -127055002 + MIR SINE MIR 95 250 -12 429 333 107 14 chr9 15216864 15217218 -127054226 - L1ME4a LINE L1 -83 6038 5652 311 302 116 31 chr9 15217806 15218064 -127053380 - L1M4 LINE L1 -3722 2424 2145 1076 195 116 30 chr9 15218084 15218454 -127052990 - LTR37A LTR ERV1 -21 405 4 549 342 82 57 chr9 15218762 15219582 -127051862 - HAL1b LINE L1 -579 1593 26 261 272 144 45 chr9 15219970 15220172 -127051272 + HAL1 LINE L1 319 540 -1967 2607 249 116 39 chr9 15220290 15221632 -127049812 + HAL1 LINE L1 756 2205 -302 1868 175 25 11 chr9 15221632 15221992 -127049452 - MLT1A1 LTR MaLR 0 365 1 31 58 0 0 chr9 15222178 15222230 -127049214 + AT_rich Low_complexity Low_complexity 1 52 0 499 110 0 0 chr9 15223349 15223422 -127048022 + Alu SINE Alu 227 299 -11 654 300 25 17 chr9 15223551 15223791 -127047653 - MLT1J LTR MaLR -159 352 111 1233 225 67 59 chr9 15227314 15227815 -127043629 + MER39 LTR ERV1 1 686 -21 730 253 29 57 chr9 15228989 15229270 -127042174 + Charlie8 DNA MER1_type 1 273 -2144 1490 203 32 11 chr9 15229775 15230056 -127041388 + AluJo SINE Alu 1 287 -25 300 191 90 22 chr9 15230064 15230153 -127041291 + L1MC4 LINE L1 6608 6702 -1340 536 128 34 28 chr9 15230162 15230341 -127041103 + (TA)n Simple_repeat Simple_repeat 1 180 0 192 40 0 0 chr9 15230339 15230364 -127041080 + (CCCTAA)n Simple_repeat Simple_repeat 4 28 0 * 347 192 87 19 chr9 15230375 15230479 -127040965 + L1MCa LINE L1 1995 2105 -4321 203 227 15 15 chr9 15230479 15230545 -127040899 + (TA)n Simple_repeat Simple_repeat 1 66 0 198 287 157 13 chr9 15231081 15231173 -127040271 - MIR SINE MIR -61 147 60 220 281 146 0 chr9 15231334 15231416 -127040028 + MIR SINE MIR 107 200 -62 908 247 28 0 chr9 15231499 15231677 -127039767 - MER5A DNA MER1_type 0 189 7 200 300 0 0 chr9 15232315 15232365 -127039079 + (TG)n Simple_repeat Simple_repeat 1 50 0 243 0 0 0 chr9 15232891 15232918 -127038526 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr9 15233078 15233100 -127038344 + AT_rich Low_complexity Low_complexity 1 22 0 807 223 43 11 chr9 15233167 15233355 -127038089 - MIR SINE MIR -38 224 31 185 323 46 0 chr9 15234791 15234856 -127036588 - L2 LINE L2 -1 3312 3245 2176 79 52 0 chr9 15235869 15236159 -127035285 + AluSp SINE Alu 1 305 -8 413 229 76 0 chr9 15236261 15236366 -127035078 + MER94 DNA DNA 1 113 -21 2193 97 0 0 chr9 15236368 15236679 -127034765 + AluSq SINE Alu 1 311 0 367 295 180 0 chr9 15236737 15236876 -127034568 + MIR SINE MIR 65 228 -34 241 318 0 0 chr9 15238289 15238355 -127033089 - MIR SINE MIR -10 252 187 243 164 66 33 chr9 15238715 15238776 -127032668 - MIR SINE MIR -115 147 85 280 312 20 7 chr9 15238823 15238966 -127032478 + MER20B DNA MER1_type 27 174 -45 232 284 110 37 chr9 15239965 15240128 -127031316 + MIR SINE MIR 15 192 -65 239 197 15 15 chr9 15240499 15240565 -127030879 + (GTTTG)n Simple_repeat Simple_repeat 2 67 0 682 294 76 5 chr9 15240716 15240927 -127030517 + MIR SINE MIR 37 262 0 217 296 0 0 chr9 15240939 15240993 -127030451 - L2 LINE L2 -9 3263 3210 354 287 0 0 chr9 15241673 15241760 -127029684 + L2 LINE L2 3227 3313 0 308 372 29 17 chr9 15241919 15242091 -127029353 + MIR3 SINE MIR 6 179 -29 1626 220 78 31 chr9 15242295 15242809 -127028635 - MLT1F LTR MaLR -4 538 1 1668 232 42 20 chr9 15243215 15243663 -127027781 + MER70A LTR ERVL 15 472 0 191 366 14 0 chr9 15243821 15243892 -127027552 + MIR SINE MIR 69 140 -122 749 307 71 24 chr9 15244153 15244534 -127026910 - MLT1I LTR MaLR -10 399 1 519 276 110 12 chr9 15245062 15245225 -127026219 + MIR3 SINE MIR 24 202 -6 376 225 90 11 chr9 15245972 15246061 -127025383 + MIR SINE MIR 85 180 -82 2191 117 0 3 chr9 15246453 15246753 -127024691 - AluSx SINE Alu -11 301 3 198 91 0 0 chr9 15247229 15247262 -127024182 + (T)n Simple_repeat Simple_repeat 1 33 0 304 283 81 0 chr9 15247302 15247401 -127024043 - MIR3 SINE MIR -1 207 101 205 349 36 0 chr9 15247488 15247571 -127023873 + MIR3 SINE MIR 76 161 -47 180 0 0 0 chr9 15249237 15249257 -127022187 + (T)n Simple_repeat Simple_repeat 1 20 0 192 247 12 74 chr9 15250784 15250865 -127020579 + MIR SINE MIR 5 80 -182 347 333 9 9 chr9 15251368 15251482 -127019962 + MIR3 SINE MIR 76 189 -19 286 56 19 37 chr9 15251819 15251873 -127019571 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 2131 92 7 0 chr9 15251876 15252148 -127019296 - AluSx SINE Alu -37 275 2 336 309 41 24 chr9 15252824 15252947 -127018497 + MIR SINE MIR 21 145 -117 188 250 0 59 chr9 15254110 15254178 -127017266 - MIR SINE MIR 0 262 199 1115 150 6 0 chr9 15254274 15254441 -127017003 - FRAM SINE Alu -14 162 1 1673 162 10 32 chr9 15254446 15254754 -127016690 - AluJb SINE Alu -11 301 1 315 255 99 21 chr9 15254914 15255055 -127016389 + L1ME4a LINE L1 5970 6121 0 447 280 155 20 chr9 15255245 15255445 -127015999 + L3b LINE CR1 1126 1352 -231 28 0 0 0 chr9 15256038 15256066 -127015378 + AT_rich Low_complexity Low_complexity 1 28 0 332 318 57 17 chr9 15256151 15256329 -127015115 - MIR SINE MIR -64 144 6 331 300 69 8 chr9 15256783 15256913 -127014531 - MIR SINE MIR -47 215 78 577 240 111 41 chr9 15256929 15257200 -127014244 + MLT1H LTR MaLR 18 307 -242 1788 25 0 0 chr9 15257399 15257600 -127013844 - L1P2 LINE L1 -473 5681 5481 7951 30 27 0 chr9 15257600 15258572 -127012872 - L1PA4 LINE L1 -1 6154 5176 277 356 0 0 chr9 15260270 15260385 -127011059 + GA-rich Low_complexity Low_complexity 2 116 0 396 269 23 15 chr9 15261072 15261202 -127010242 + MLT1J LTR MaLR 53 183 -328 333 365 74 17 chr9 15261245 15261475 -127009969 + MLT1J LTR MaLR 246 488 -23 348 243 6 127 chr9 15261949 15262122 -127009322 - L2 LINE L2 -50 3263 3112 220 233 0 0 chr9 15262459 15262502 -127008942 - MIR SINE MIR -4 258 216 2318 91 0 3 chr9 15262573 15262871 -127008573 - AluY SINE Alu -14 297 1 348 24 0 0 chr9 15262939 15262980 -127008464 + (TG)n Simple_repeat Simple_repeat 2 42 0 227 366 0 10 chr9 15263777 15263878 -127007566 - MIR SINE MIR -155 107 8 399 41 0 0 chr9 15263885 15263934 -127007510 + (CA)n Simple_repeat Simple_repeat 2 50 0 204 40 0 0 chr9 15263933 15263958 -127007486 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 824 279 108 22 chr9 15264029 15264505 -127006939 + MLT1K LTR MaLR 10 556 -32 282 143 0 0 chr9 15264857 15264920 -127006524 + (TC)n Simple_repeat Simple_repeat 2 64 0 288 0 0 0 chr9 15264920 15264952 -127006492 + (CA)n Simple_repeat Simple_repeat 1 32 0 318 50 0 0 chr9 15265354 15265394 -127006050 + (CA)n Simple_repeat Simple_repeat 2 41 0 302 265 90 78 chr9 15267073 15267239 -127004205 - MIR3 SINE MIR -25 183 16 6142 120 7 19 chr9 15267254 15268136 -127003308 - HSMAR1 DNA Mariner 0 1287 417 39515 36 3 4 chr9 15268136 15273675 -126997769 + L1PA4 LINE L1 622 6155 0 2947 95 11 32 chr9 15273680 15273783 -126997661 - HSMAR1 DNA Mariner -854 433 329 1995 161 0 0 chr9 15273783 15274087 -126997357 - AluSx SINE Alu -8 304 1 2947 95 11 32 chr9 15274087 15274416 -126997028 - HSMAR1 DNA Mariner -958 329 10 279 337 43 27 chr9 15275133 15275320 -126996124 + MLT1J2 LTR MaLR 261 450 0 989 271 82 38 chr9 15275328 15275745 -126995699 - LTR16A LTR ERVL 0 450 16 290 340 14 14 chr9 15275884 15276031 -126995413 - HERVL LTR ERVL -327 5327 5181 687 347 57 15 chr9 15276180 15276772 -126994672 - HERVL LTR ERVL -498 4987 4500 1288 351 45 18 chr9 15276832 15277620 -126993824 - HERVL LTR ERVL -1283 4371 3613 323 337 127 39 chr9 15277619 15277824 -126993620 - HERV16 LTR ERVL -3189 1807 1585 * 361 121 17 0 chr9 15277863 15277921 -126993523 - LTR10B LTR ERV1 -2 545 487 652 312 5 0 chr9 15278214 15278413 -126993031 - HERV16 LTR ERVL -3677 1319 1120 714 320 46 12 chr9 15278444 15278703 -126992741 - LTR16A LTR ERVL -122 328 61 332 328 110 69 chr9 15278792 15279155 -126992289 + L2 LINE L2 2895 3272 0 294 146 0 0 chr9 15280130 15280185 -126991259 + LTR1 LTR ERV1 8 62 -723 328 139 4 0 chr9 15280200 15280263 -126991181 - Alu SINE Alu -254 48 2 3909 124 45 51 chr9 15280451 15281177 -126990267 + LTR1 LTR ERV1 63 784 -1 369 275 116 7 chr9 15281305 15281443 -126990001 + MIR SINE MIR 82 234 -28 442 269 31 0 chr9 15281643 15281773 -126989671 + MIR SINE MIR 97 230 -32 405 104 15 30 chr9 15282210 15282277 -126989167 + L1MC1 LINE L1 6263 6328 -5 198 248 85 85 chr9 15282431 15282560 -126988884 - MIR SINE MIR -50 212 84 819 291 29 0 chr9 15283319 15283563 -126987881 - MIR SINE MIR 0 262 12 879 134 0 0 chr9 15283567 15283709 -126987735 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 1521 172 12 68 chr9 15283711 15284037 -126987407 - AluJb SINE Alu 0 312 5 495 271 16 8 chr9 15285559 15285688 -126985756 - MER94 DNA DNA 0 134 5 435 323 48 56 chr9 15285922 15286173 -126985271 - L2 LINE L2 0 3272 3024 350 340 96 10 chr9 15286258 15286467 -126984977 - L2 LINE L2 -428 2886 2660 234 269 29 39 chr9 15286611 15286715 -126984729 + MIR SINE MIR 81 183 -79 451 321 104 17 chr9 15287011 15287251 -126984193 - MIR SINE MIR 0 262 2 228 205 29 70 chr9 15287882 15288053 -126983391 + (TTTAA)n Simple_repeat Simple_repeat 1 164 0 * 229 125 14 69 chr9 15287988 15288060 -126983384 + (TTAAA)n Simple_repeat Simple_repeat 3 70 0 1589 266 109 56 chr9 15288068 15289019 -126982425 + L2 LINE L2 2235 3255 -58 1433 205 57 10 chr9 15289053 15289170 -126982274 + AluJb SINE Alu 1 111 -201 1043 75 0 7 chr9 15289170 15289317 -126982127 + (GAAA)n Simple_repeat Simple_repeat 3 148 0 1433 205 57 10 chr9 15289317 15289497 -126981947 + AluJb SINE Alu 111 312 0 302 287 19 19 chr9 15290407 15290515 -126980929 + Charlie1 DNA MER1_type 2355 2462 -299 39 38 0 0 chr9 15290599 15290652 -126980792 + AT_rich Low_complexity Low_complexity 1 53 0 261 320 95 35 chr9 15290826 15291026 -126980418 - MIR SINE MIR -1 261 50 808 134 0 0 chr9 15291637 15291756 -126979688 - AluSg/x SINE Alu -4 306 188 224 271 176 0 chr9 15291879 15291964 -126979480 + MIR SINE MIR 106 205 -57 652 319 32 39 chr9 15291985 15292199 -126979245 + L2 LINE L2 2239 2452 -862 4002 138 3 0 chr9 15292199 15292771 -126978673 - L1PA16 LINE L1 -9 6157 5584 652 319 32 39 chr9 15292771 15292866 -126978578 + L2 LINE L2 2452 2546 -768 2025 137 3 0 chr9 15292877 15293169 -126978275 + AluSx SINE Alu 1 293 -19 896 295 120 33 chr9 15293176 15293750 -126977694 + L2 LINE L2 2696 3309 -4 1147 291 65 10 chr9 15293986 15294399 -126977045 + L1MC4a LINE L1 5496 5931 -1877 838 316 97 42 chr9 15295465 15296016 -126975428 + L2 LINE L2 2174 2792 -480 1763 185 0 10 chr9 15296016 15296314 -126975130 - AluJb SINE Alu -14 298 4 838 316 97 42 chr9 15296314 15296618 -126974826 + L2 LINE L2 2792 3078 -194 219 301 48 39 chr9 15296863 15296966 -126974478 + MIR SINE MIR 60 163 -99 326 388 8 0 chr9 15298773 15298894 -126972550 + L2 LINE L2 3134 3255 -17 741 23 0 0 chr9 15298895 15298982 -126972462 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 283 362 26 63 chr9 15299305 15299573 -126971871 - L2 LINE L2 -191 3081 2824 332 301 123 25 chr9 15299655 15299858 -126971586 + MIR SINE MIR 11 233 -29 252 302 145 19 chr9 15301098 15301257 -126970187 + MIR SINE MIR 72 250 -12 23 0 0 0 chr9 15301912 15301935 -126969509 + AT_rich Low_complexity Low_complexity 1 23 0 403 281 83 69 chr9 15301941 15302304 -126969140 + L1ME4a LINE L1 5462 5829 -292 2271 94 0 7 chr9 15302304 15302601 -126968843 + AluSg SINE Alu 1 295 -15 244 236 0 14 chr9 15302669 15302741 -126968703 + L1ME4a LINE L1 6049 6119 -2 24 32 0 0 chr9 15303186 15303217 -126968227 + GC_rich Low_complexity Low_complexity 1 31 0 941 196 17 0 chr9 15305005 15305178 -126966266 + MER5B DNA MER1_type 1 176 -2 206 388 66 8 chr9 15305753 15305874 -126965570 + L2 LINE L2 3121 3248 -24 2682 111 28 14 chr9 15305950 15306309 -126965135 - THE1B LTR MaLR 0 364 1 1929 157 14 3 chr9 15306733 15307026 -126964418 - AluSx SINE Alu -16 296 1 261 238 0 82 chr9 15307174 15307223 -126964221 + A-rich Low_complexity Low_complexity 3 54 -60 1551 187 9 78 chr9 15307223 15307555 -126963889 + AluJo SINE Alu 1 309 -3 261 238 0 82 chr9 15307555 15307627 -126963817 + A-rich Low_complexity Low_complexity 54 114 0 234 282 39 13 chr9 15307648 15307726 -126963718 - MIR SINE MIR -88 174 95 1606 204 0 7 chr9 15307728 15308043 -126963401 + AluJo SINE Alu 1 313 0 230 333 0 56 chr9 15309091 15309235 -126962209 - MIR SINE MIR -27 235 100 336 324 22 54 chr9 15309330 15309515 -126961929 - L3 LINE CR1 -211 1366 1188 276 185 0 0 chr9 15309696 15309750 -126961694 + (TA)n Simple_repeat Simple_repeat 2 55 0 1799 133 0 98 chr9 15309799 15310145 -126961299 + AluJb SINE Alu 1 312 0 195 100 0 0 chr9 15310328 15310358 -126961086 + (TTA)n Simple_repeat Simple_repeat 2 31 0 432 278 198 5 chr9 15310701 15310888 -126960556 + MIR SINE MIR 34 256 -6 14597 134 25 2 chr9 15310963 15313327 -126958117 - Tigger1 DNA MER2_type 0 2418 1 299 287 20 0 chr9 15314978 15315079 -126956365 + L1ME LINE L1 5713 5815 -306 22 35 0 0 chr9 15315489 15315518 -126955926 + AT_rich Low_complexity Low_complexity 1 29 0 1898 171 0 3 chr9 15315754 15316047 -126955397 + AluJo SINE Alu 1 292 -20 285 296 139 0 chr9 15316495 15316603 -126954841 + MER5C DNA MER1_type 1 123 -201 502 313 61 70 chr9 15317305 15317717 -126953727 + L1MC4a LINE L1 3524 3931 -2215 431 316 65 39 chr9 15317744 15318051 -126953393 + L1MC4a LINE L1 4747 5061 -1085 378 285 130 48 chr9 15318115 15318798 -126952646 + L1MC4a LINE L1 5192 5367 -779 2227 77 35 0 chr9 15319052 15319337 -126952107 - AluSc SINE Alu -14 295 1 268 234 52 32 chr9 15319868 15320022 -126951422 - L1M4 LINE L1 -798 5348 5192 329 325 0 57 chr9 15320117 15320240 -126951204 - MIR SINE MIR -95 113 4 327 229 229 25 chr9 15320756 15320913 -126950531 - L1MEc LINE L1 -4096 2300 2112 3306 46 0 5 chr9 15320968 15321380 -126950064 + L1PA3 LINE L1 5746 6155 0 26 0 0 27 chr9 15321390 15321401 -126950043 + AT_rich Low_complexity Low_complexity 1 11 -25 3244 28 0 3 chr9 15321401 15321788 -126949656 + L1PA4 LINE L1 5770 6155 0 26 0 0 27 chr9 15321788 15321813 -126949631 + AT_rich Low_complexity Low_complexity 11 36 0 1602 186 41 14 chr9 15321946 15322236 -126949208 - AluJb SINE Alu -14 298 1 495 246 8 0 chr9 15322664 15322798 -126948646 + L1MD2 LINE L1 6139 6273 -86 1756 146 32 14 chr9 15323244 15323552 -126947892 - AluSx SINE Alu 0 313 1 389 297 27 0 chr9 15324331 15324442 -126947002 - MIR3 SINE MIR -13 195 82 424 254 39 117 chr9 15325764 15326150 -126945294 - MLT1I LTR MaLR 0 409 54 1805 124 0 55 chr9 15326235 15326510 -126944934 + AluSg SINE Alu 21 280 -30 235 233 0 33 chr9 15326714 15326774 -126944670 + GA-rich Low_complexity Low_complexity 32 89 0 216 191 21 0 chr9 15327625 15327672 -126943772 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 0 0 0 chr9 15327818 15327840 -126943604 + AT_rich Low_complexity Low_complexity 1 22 0 1514 231 14 16 chr9 15328427 15328791 -126942653 - MLT1A2 LTR MaLR -11 363 1 546 292 64 5 chr9 15330085 15330287 -126941157 + MIR SINE MIR 49 262 0 441 155 14 0 chr9 15332419 15332490 -126938954 - AluJ/FLAM SINE Alu -236 76 5 1121 179 0 31 chr9 15332554 15332750 -126938694 - AluJo SINE Alu -118 194 5 1451 146 50 124 chr9 15332873 15333277 -126938167 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr9 15333427 15333448 -126937996 + AT_rich Low_complexity Low_complexity 1 21 0 266 226 0 0 chr9 15334266 15334319 -126937125 + MIR SINE MIR 107 159 -103 491 272 103 22 chr9 15334541 15334725 -126936719 + MIR3 SINE MIR 3 201 -7 259 291 183 23 chr9 15337018 15337193 -126934251 - L2 LINE L2 -34 3279 3077 261 314 44 73 chr9 15337532 15337669 -126933775 - MER5B DNA MER1_type -38 140 8 496 297 39 28 chr9 15338269 15338451 -126932993 - MIR3 SINE MIR -7 201 18 427 295 93 79 chr9 15339082 15339401 -126932043 + MLT1J LTR MaLR 1 331 -180 1753 166 39 0 chr9 15339401 15339684 -126931760 + AluJb SINE Alu 1 294 -18 427 295 93 79 chr9 15339684 15339835 -126931609 + MLT1J LTR MaLR 331 478 -33 449 289 16 8 chr9 15340946 15341067 -126930377 - MIR SINE MIR -135 127 6 287 302 155 0 chr9 15342657 15342773 -126928671 + L2 LINE L2 2958 3091 -181 33 25 0 0 chr9 15342974 15343014 -126928430 + AT_rich Low_complexity Low_complexity 1 40 0 2048 145 0 0 chr9 15343027 15343317 -126928127 - AluSx SINE Alu -22 290 1 280 333 135 0 chr9 15343492 15343633 -126927811 - L3 LINE CR1 -164 1413 1254 287 181 95 31 chr9 15344358 15344465 -126926979 - MER5B DNA MER1_type 0 178 1 208 263 348 0 chr9 15344956 15345074 -126926370 - MIR SINE MIR -102 160 2 427 233 53 73 chr9 15346567 15346597 -126924847 - MIR SINE MIR -24 238 209 2441 93 3 0 chr9 15346597 15346909 -126924535 - AluSp SINE Alu 0 313 1 427 233 53 73 chr9 15346909 15347028 -126924416 - MIR SINE MIR -53 209 92 2063 134 3 3 chr9 15347653 15347958 -126923486 + AluSc SINE Alu 1 305 -4 411 279 103 49 chr9 15348855 15349059 -126922385 + MIR SINE MIR 48 262 0 21 0 0 0 chr9 15349303 15349324 -126922120 + AT_rich Low_complexity Low_complexity 1 21 0 598 271 33 17 chr9 15349399 15349580 -126921864 + MIR SINE MIR 67 250 -12 1998 139 19 13 chr9 15351237 15351547 -126919897 - AluJb SINE Alu 0 312 1 633 267 75 11 chr9 15353179 15353366 -126918078 - MIR SINE MIR -31 231 33 1850 131 0 11 chr9 15353436 15353703 -126917741 - AluJb SINE Alu -5 307 44 21 0 0 0 chr9 15355187 15355208 -126916236 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr9 15355746 15355770 -126915674 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr9 15356062 15356086 -126915358 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr9 15356454 15356476 -126914968 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr9 15357262 15357283 -126914161 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 15359223 15359252 -126912192 + AT_rich Low_complexity Low_complexity 1 29 0 216 86 0 0 chr9 15359748 15359783 -126911661 + (T)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr9 15359850 15359871 -126911573 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 15360439 15360460 -126910984 + AT_rich Low_complexity Low_complexity 1 21 0 270 160 0 0 chr9 15360531 15360581 -126910863 + T-rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr9 15361117 15361143 -126910301 + AT_rich Low_complexity Low_complexity 1 26 0 193 222 0 0 chr9 15362971 15363007 -126908437 + L2 LINE L2 3256 3291 -22 22 0 0 0 chr9 15364277 15364299 -126907145 + AT_rich Low_complexity Low_complexity 1 22 0 241 310 14 14 chr9 15365033 15365104 -126906340 + L3 LINE CR1 1025 1095 -482 490 282 118 9 chr9 15365290 15365482 -126905962 - MIR SINE MIR -19 243 35 313 358 119 11 chr9 15365512 15365688 -126905756 + L3 LINE CR1 1343 1537 -40 23 33 0 0 chr9 15366506 15366536 -126904908 + AT_rich Low_complexity Low_complexity 1 30 0 943 280 21 4 chr9 15366905 15367148 -126904296 - MIR SINE MIR -8 254 8 206 173 0 19 chr9 15370588 15370640 -126900804 + (CA)n Simple_repeat Simple_repeat 2 52 0 366 80 0 0 chr9 15370826 15370876 -126900568 + (T)n Simple_repeat Simple_repeat 1 50 0 1963 139 10 3 chr9 15372773 15373082 -126898362 + AluSx SINE Alu 1 311 -1 2321 40 0 20 chr9 15373409 15373706 -126897738 + AluY SINE Alu 1 291 -20 1977 134 24 3 chr9 15376904 15377194 -126894250 - AluSx SINE Alu -14 298 3 992 174 45 67 chr9 15377561 15377785 -126893659 - AluJo SINE Alu -10 302 84 21 36 0 0 chr9 15378962 15378990 -126892454 + AT_rich Low_complexity Low_complexity 1 28 0 341 296 185 6 chr9 15380541 15380703 -126890741 - MIR3 SINE MIR -17 191 1 210 71 0 0 chr9 15391739 15391767 -126879677 + (T)n Simple_repeat Simple_repeat 1 28 0 1850 123 0 4 chr9 15393963 15394223 -126877221 + AluSq SINE Alu 1 259 -54 185 0 40 0 chr9 15394239 15394264 -126877180 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 185 0 40 0 chr9 15394286 15394311 -126877133 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr9 15394739 15394762 -126876682 + AT_rich Low_complexity Low_complexity 1 23 0 388 271 25 25 chr9 15395344 15395466 -126875978 + MER5A DNA MER1_type 64 185 -4 2052 115 22 26 chr9 15395949 15396262 -126875182 + AluSx SINE Alu 1 312 0 448 335 43 43 chr9 15396332 15396586 -126874858 + L2 LINE L2 2598 2851 -463 229 380 0 6 chr9 15396668 15396826 -126874618 + (CCTG)n Simple_repeat Simple_repeat 3 159 0 2288 95 0 0 chr9 15398142 15398436 -126873008 - AluSg SINE Alu -14 296 3 184 365 148 0 chr9 15399232 15399347 -126872097 - L2 LINE L2 0 3272 3141 313 372 58 0 chr9 15399829 15399950 -126871494 - L2 LINE L2 0 3272 3145 874 206 29 40 chr9 15400321 15400593 -126870851 - L1MC5 LINE L1 -34 7927 7659 21 0 0 0 chr9 15401218 15401239 -126870205 + AT_rich Low_complexity Low_complexity 1 21 0 2280 97 10 0 chr9 15401398 15401697 -126869747 + AluSq SINE Alu 1 302 -11 24 32 0 0 chr9 15401893 15401924 -126869520 + AT_rich Low_complexity Low_complexity 1 31 0 228 86 0 0 chr9 15402370 15402405 -126869039 + (A)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr9 15402508 15402531 -126868913 + AT_rich Low_complexity Low_complexity 1 23 0 258 374 61 9 chr9 15403886 15404001 -126867443 - L2 LINE L2 -15 3257 3137 1565 188 29 0 chr9 15405499 15405845 -126865599 - AluJo SINE Alu 0 356 3 316 252 135 0 chr9 15407217 15407328 -126864116 + L1ME4a LINE L1 5524 5649 -472 214 234 53 96 chr9 15407328 15407422 -126864022 - L2 LINE L2 -2 3311 3222 733 248 80 57 chr9 15407431 15407592 -126863852 + L1ME4a LINE L1 5661 5817 -304 2191 108 0 19 chr9 15407592 15407908 -126863536 + AluSx SINE Alu 1 310 -2 733 248 80 57 chr9 15407908 15408182 -126863262 + L1ME4a LINE L1 5817 6106 -15 281 313 122 9 chr9 15410502 15410617 -126860827 - MIR3 SINE MIR -7 201 74 24 32 0 0 chr9 15410695 15410726 -126860718 + AT_rich Low_complexity Low_complexity 1 31 0 428 288 167 9 chr9 15411010 15411225 -126860219 + MIR SINE MIR 1 249 -13 615 276 97 17 chr9 15411312 15411714 -126859730 + L1MC5 LINE L1 7452 7885 -76 198 103 0 0 chr9 15411875 15411904 -126859540 + (TG)n Simple_repeat Simple_repeat 2 30 0 208 273 236 18 chr9 15412163 15412273 -126859171 + MIR3 SINE MIR 65 198 -10 229 217 0 0 chr9 15413460 15413506 -126857938 - MER103 DNA DNA -45 121 76 1648 171 0 4 chr9 15413634 15413908 -126857536 + AluJb SINE Alu 1 273 -39 347 176 0 14 chr9 15414805 15414879 -126856565 + LTR30 LTR ERV1 552 624 -98 216 0 0 0 chr9 15414885 15414909 -126856535 + (A)n Simple_repeat Simple_repeat 1 24 0 2058 125 75 20 chr9 15415111 15415456 -126855988 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr9 15415944 15415979 -126855465 + AT_rich Low_complexity Low_complexity 1 35 0 378 0 0 0 chr9 15416974 15417016 -126854428 + (TG)n Simple_repeat Simple_repeat 2 43 0 403 274 29 10 chr9 15417522 15417624 -126853820 - L2 LINE L2 -5 3308 3205 285 371 13 13 chr9 15417921 15418072 -126853372 - L2 LINE L2 -507 2807 2657 1295 169 0 14 chr9 15418633 15418852 -126852592 - AluJb SINE Alu -12 300 85 517 326 38 21 chr9 15420213 15420449 -126850995 + MIR SINE MIR 21 260 -2 21 36 0 0 chr9 15420463 15420491 -126850953 + AT_rich Low_complexity Low_complexity 1 28 0 1803 177 0 7 chr9 15420619 15420924 -126850520 - AluJb SINE Alu -9 303 1 1644 170 50 20 chr9 15421094 15421394 -126850050 - AluJb SINE Alu -1 311 3 22 35 0 0 chr9 15421396 15421425 -126850019 + AT_rich Low_complexity Low_complexity 1 29 0 405 319 64 43 chr9 15421492 15421680 -126849764 - MIR3 SINE MIR -1 207 16 232 178 22 0 chr9 15423033 15423084 -126848360 + (CCTA)n Simple_repeat Simple_repeat 1 52 0 756 41 41 0 chr9 15423816 15423913 -126847531 + L1MA3 LINE L1 6158 6258 -47 486 264 29 7 chr9 15424063 15424203 -126847241 + MIR SINE MIR 114 256 -6 187 230 207 11 chr9 15424328 15424415 -126847029 - L2 LINE L2 0 3272 3169 1916 166 45 20 chr9 15425755 15426152 -126845292 + L1MA4 LINE L1 5883 6289 -11 505 279 29 47 chr9 15429934 15430106 -126841338 + MIR SINE MIR 8 176 -86 1890 107 0 0 chr9 15430851 15431135 -126840309 + AluSg SINE Alu 39 322 0 195 353 30 68 chr9 15431446 15431579 -126839865 + L2 LINE L2 3125 3252 -20 377 231 0 13 chr9 15433454 15433532 -126837912 + L3 LINE CR1 1238 1314 -263 248 250 50 38 chr9 15433653 15433733 -126837711 - MIR SINE MIR -60 202 122 237 108 0 0 chr9 15433814 15433851 -126837593 + (A)n Simple_repeat Simple_repeat 1 37 0 1118 251 85 54 chr9 15434453 15435030 -126836414 - L1ME4a LINE L1 -135 5986 5392 431 303 128 63 chr9 15435128 15435683 -126835761 - L1ME4a LINE L1 -2028 4118 3528 24 85 0 0 chr9 15435763 15435822 -126835622 + AT_rich Low_complexity Low_complexity 1 59 0 314 325 169 0 chr9 15435942 15436102 -126835342 + MIR SINE MIR 5 191 -71 263 286 27 0 chr9 15436172 15436284 -126835160 + A-rich Low_complexity Low_complexity 2 116 0 481 289 204 34 chr9 15436284 15436986 -126834458 + L1M4 LINE L1 2131 2951 -3195 252 265 73 35 chr9 15437017 15437216 -126834228 + L1M4 LINE L1 3081 3271 -2875 1851 157 36 12 chr9 15437216 15437553 -126833891 - MER7A DNA MER2_type -1 345 3 252 265 73 35 chr9 15437553 15437723 -126833721 + L1M4 LINE L1 3271 3464 -2682 707 232 11 17 chr9 15437737 15437914 -126833530 - MER5B DNA MER1_type -1 177 2 418 284 148 13 chr9 15437926 15438081 -126833363 + MER5A DNA MER1_type 10 185 -4 344 238 161 6 chr9 15438374 15438542 -126832902 + L1M4 LINE L1 3735 3928 -2218 1764 151 7 0 chr9 15438721 15439012 -126832432 + L1MB2 LINE L1 5878 6170 -1 457 195 57 110 chr9 15440118 15440243 -126831201 + L1MA10 LINE L1 5949 6079 -249 1735 171 34 0 chr9 15440243 15440535 -126830909 + AluSx SINE Alu 1 302 -10 457 195 57 110 chr9 15440535 15440611 -126830833 + L1MA10 LINE L1 6079 6323 -5 446 157 0 11 chr9 15442243 15442332 -126829112 + GA-rich Low_complexity Low_complexity 4 91 0 234 0 0 0 chr9 15442962 15442988 -126828456 + (CA)n Simple_repeat Simple_repeat 2 27 0 1600 159 59 14 chr9 15443209 15443499 -126827945 - AluSx SINE Alu -9 303 1 225 0 0 0 chr9 15443727 15443752 -126827692 + (A)n Simple_repeat Simple_repeat 1 25 0 564 280 155 19 chr9 15444060 15444267 -126827177 - MIR SINE MIR 0 262 28 233 204 0 0 chr9 15447561 15447605 -126823839 + (CA)n Simple_repeat Simple_repeat 2 45 0 503 216 27 27 chr9 15449835 15449946 -126821498 - MIR SINE MIR -80 182 72 806 223 27 0 chr9 15450434 15450618 -126820826 - MER5A DNA MER1_type 0 189 1 239 263 62 12 chr9 15450652 15450732 -126820712 + L2 LINE L2 2702 2785 -529 617 217 66 24 chr9 15451311 15451477 -126819967 + MER45A DNA AcHobo 1 173 -5 385 344 38 5 chr9 15452849 15453035 -126818409 + MIR SINE MIR 70 261 -1 22 70 0 0 chr9 15453234 15453277 -126818167 + AT_rich Low_complexity Low_complexity 1 43 0 489 34 0 0 chr9 15453520 15453579 -126817865 + (TC)n Simple_repeat Simple_repeat 2 60 0 405 0 0 0 chr9 15453578 15453623 -126817821 + (TG)n Simple_repeat Simple_repeat 2 46 0 * 2391 92 3 0 chr9 15454410 15454713 -126816731 + AluSp SINE Alu 1 304 -9 207 0 0 0 chr9 15456413 15456436 -126815008 + (A)n Simple_repeat Simple_repeat 1 23 0 396 0 0 0 chr9 15457874 15457918 -126813526 + (CA)n Simple_repeat Simple_repeat 2 45 0 354 224 12 24 chr9 15458476 15458561 -126812883 - MIR SINE MIR -104 158 75 190 296 19 0 chr9 15458906 15458960 -126812484 + MIR3 SINE MIR 100 154 -54 329 161 0 16 chr9 15459294 15459356 -126812088 + MLT1E1 LTR MaLR 3 63 -591 1887 158 26 3 chr9 15459554 15459857 -126811587 + AluJb SINE Alu 3 312 0 2038 131 10 0 chr9 15461234 15461524 -126809920 + AluSx SINE Alu 1 293 -19 1740 167 11 7 chr9 15462055 15462336 -126809108 + AluJo SINE Alu 1 282 -30 306 385 0 8 chr9 15463435 15463565 -126807879 - L2 LINE L2 -955 2359 2231 2130 96 0 0 chr9 15464470 15464740 -126806704 - AluSg SINE Alu -17 293 24 26 82 0 0 chr9 15465104 15465165 -126806279 + AT_rich Low_complexity Low_complexity 1 61 0 256 318 0 0 chr9 15465229 15465292 -126806152 + L2 LINE L2 3246 3308 -5 2452 70 0 3 chr9 15466181 15466481 -126804963 + AluSg SINE Alu 1 299 -11 2445 68 0 16 chr9 15466859 15467169 -126804275 - AluY SINE Alu -6 305 1 192 125 0 0 chr9 15467955 15467987 -126803457 + (A)n Simple_repeat Simple_repeat 1 32 0 27 49 0 0 chr9 15468253 15468294 -126803150 + AT_rich Low_complexity Low_complexity 1 41 0 393 329 45 13 chr9 15472027 15472182 -126799262 + L3 LINE CR1 281 440 -1137 183 338 53 53 chr9 15472404 15472537 -126798907 + L2 LINE L2 3137 3269 -3 234 0 0 0 chr9 15474382 15474408 -126797036 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 459 0 0 0 chr9 15474407 15474458 -126796986 + (TG)n Simple_repeat Simple_repeat 2 52 0 329 325 41 16 chr9 15474475 15474598 -126796846 + MIR SINE MIR 56 181 -81 24 91 0 0 chr9 15474688 15474754 -126796690 + AT_rich Low_complexity Low_complexity 1 66 0 2151 121 0 3 chr9 15475104 15475401 -126796043 - AluJb SINE Alu -14 298 3 1595 128 4 24 chr9 15476450 15476700 -126794744 + AluSx SINE Alu 15 259 -53 186 262 24 0 chr9 15476701 15476743 -126794701 + L2 LINE L2 3222 3264 -8 277 275 29 0 chr9 15477819 15477888 -126793556 + MIR3 SINE MIR 135 205 -3 24 77 0 0 chr9 15478120 15478172 -126793272 + AT_rich Low_complexity Low_complexity 1 52 0 600 40 0 0 chr9 15478668 15478704 -126792740 + (TG)n Simple_repeat Simple_repeat 1 111 0 600 40 0 0 chr9 15478704 15478779 -126792665 + (TG)n Simple_repeat Simple_repeat 2 76 0 188 35 35 0 chr9 15478934 15478963 -126792481 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 391 270 122 0 chr9 15481387 15481502 -126789942 + L2 LINE L2 3183 3311 -2 948 141 0 0 chr9 15482608 15482743 -126788701 + AluSq/x SINE Alu 1 135 -178 1823 188 0 0 chr9 15482743 15483052 -126788392 + AluJb SINE Alu 1 309 -3 579 281 98 32 chr9 15484157 15484549 -126786895 + LTR33A LTR ERVL 6 475 -48 325 309 29 14 chr9 15490274 15490413 -126781031 - MER5A DNA MER1_type -5 184 44 271 326 158 41 chr9 15492281 15493158 -126778286 + L2 LINE L2 1986 2965 -349 262 326 22 22 chr9 15493609 15493701 -126777743 - L2 LINE L2 -23 3290 3199 324 0 0 0 chr9 15493824 15493860 -126777584 + (CA)n Simple_repeat Simple_repeat 1 36 0 1437 120 60 0 chr9 15546880 15547097 -126724347 + MER30 DNA MER1_type 1 230 0 920 211 68 77 chr9 15548374 15548710 -126722734 - MER2 DNA MER2_type -12 333 1 1017 206 38 0 chr9 15548842 15549080 -126722364 - L1MA9 LINE L1 -163 6149 5903 1273 14 0 0 chr9 15549256 15549400 -126722044 + AluYa5/8 SINE Alu 167 310 0 1736 181 3 3 chr9 15550179 15550478 -126720966 + AluJb SINE Alu 1 299 -13 2054 132 7 10 chr9 15550771 15551081 -126720363 + AluSq SINE Alu 1 309 -4 233 295 162 9 chr9 15551222 15551327 -126720117 + L2 LINE L2 3151 3271 -1 23 0 0 0 chr9 15551517 15551540 -126719904 + AT_rich Low_complexity Low_complexity 1 23 0 462 274 41 34 chr9 15551610 15551798 -126719646 - MIR SINE MIR -56 152 7 24 53 0 0 chr9 15551832 15551870 -126719574 + AT_rich Low_complexity Low_complexity 1 38 0 1918 113 8 4 chr9 15552108 15552373 -126719071 - AluSx SINE Alu -10 302 37 197 182 0 0 chr9 15553317 15553350 -126718094 - L2 LINE L2 0 3272 3240 1826 88 4 16 chr9 15553767 15554018 -126717426 - AluSp SINE Alu -65 248 1 358 256 47 47 chr9 15554378 15554507 -126716937 + L2 LINE L2 3168 3296 -17 288 0 0 0 chr9 15555049 15555081 -126716363 + (TA)n Simple_repeat Simple_repeat 2 33 0 270 164 0 0 chr9 15555205 15555260 -126716184 + GA-rich Low_complexity Low_complexity 1 55 0 2386 91 0 7 chr9 15557332 15557641 -126713803 - AluSx SINE Alu -3 309 3 2103 108 28 0 chr9 15558287 15558573 -126712871 - AluSg SINE Alu -14 296 3 25 65 0 0 chr9 15558621 15558667 -126712777 + AT_rich Low_complexity Low_complexity 1 46 0 264 330 80 0 chr9 15559243 15559343 -126712101 + MIR3 SINE MIR 56 163 -45 22 0 0 0 chr9 15560761 15560783 -126710661 + AT_rich Low_complexity Low_complexity 1 22 0 251 241 35 69 chr9 15561452 15561568 -126709876 - MIR SINE MIR -60 202 91 584 142 0 8 chr9 15561677 15561804 -126709640 + (TG)n Simple_repeat Simple_repeat 2 127 0 518 305 142 36 chr9 15561813 15562229 -126709215 - L2 LINE L2 -50 3263 2804 294 148 0 0 chr9 15564143 15564197 -126707247 + (TC)n Simple_repeat Simple_repeat 1 54 0 340 337 109 5 chr9 15568536 15568720 -126702724 + MIR SINE MIR 60 262 0 209 318 159 5 chr9 15568999 15569200 -126702244 + L2 LINE L2 2266 2497 -817 213 140 18 70 chr9 15569350 15569407 -126702037 + A-rich Low_complexity Low_complexity 1 54 0 2090 128 0 0 chr9 15569504 15569792 -126701652 + AluSx SINE Alu 1 288 -24 1182 204 22 117 chr9 15570701 15571113 -126700331 + MLT1A2 LTR MaLR 1 373 -1 329 339 116 21 chr9 15571503 15571692 -126699752 + MIR SINE MIR 53 259 -3 1838 135 4 4 chr9 15571834 15572101 -126699343 - AluJo SINE Alu 0 312 46 240 143 0 0 chr9 15572105 15572147 -126699297 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 261 98 0 0 chr9 15572195 15572236 -126699208 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 1387 178 4 4 chr9 15572259 15572484 -126698960 - AluJo SINE Alu -87 225 1 806 301 120 31 chr9 15572491 15572976 -126698468 + MLT1K LTR MaLR 42 569 -19 346 343 108 5 chr9 15573050 15573254 -126698190 - MIR SINE MIR -1 261 37 203 218 18 0 chr9 15573572 15573627 -126697817 + GA-rich Low_complexity Low_complexity 4 59 0 327 146 0 0 chr9 15576850 15576905 -126694539 + (GGGA)n Simple_repeat Simple_repeat 1 55 0 683 197 0 8 chr9 15577462 15577584 -126693860 + FLAM_A SINE Alu 1 121 -12 24 53 0 0 chr9 15577584 15577622 -126693822 + AT_rich Low_complexity Low_complexity 1 38 0 213 335 195 0 chr9 15577735 15577920 -126693524 + L2 LINE L2 2804 3024 -248 1790 168 4 0 chr9 15577933 15578207 -126693237 + AluSx SINE Alu 1 275 -37 284 0 28 0 chr9 15578211 15578247 -126693197 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 1501 187 4 8 chr9 15578898 15579166 -126692278 + AluJo SINE Alu 46 312 0 410 277 145 24 chr9 15579839 15580005 -126691439 + MIR SINE MIR 7 192 -70 22 0 0 0 chr9 15580234 15580256 -126691188 + AT_rich Low_complexity Low_complexity 1 22 0 203 289 0 22 chr9 15580367 15580457 -126690987 + GA-rich Low_complexity Low_complexity 2 89 0 662 274 99 9 chr9 15580965 15581188 -126690256 + MIR SINE MIR 2 244 -18 2140 126 3 3 chr9 15581387 15581697 -126689747 + AluSx SINE Alu 1 310 -2 2124 101 0 14 chr9 15583532 15583849 -126687595 + AluSx SINE Alu 1 313 0 2168 117 0 0 chr9 15584948 15585239 -126686205 + AluSx SINE Alu 1 291 -21 2311 191 92 20 chr9 15585377 15585978 -126685466 - LTR48B LTR ERV1 0 644 1 241 26 53 0 chr9 15586679 15586717 -126684727 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 202 397 98 16 chr9 15588677 15588871 -126682573 - L3b LINE CR1 -5 1578 1369 1628 174 18 60 chr9 15589164 15589549 -126681895 + MLT1A2 LTR MaLR 1 369 -5 325 324 133 82 chr9 15589625 15589940 -126681504 - L2 LINE L2 -2 3270 2940 225 349 95 27 chr9 15590100 15590222 -126681222 + L2 LINE L2 2227 2339 -975 1548 204 13 25 chr9 15590222 15590536 -126680908 + AluJb SINE Alu 1 310 -2 225 349 95 27 chr9 15590536 15590708 -126680736 + L2 LINE L2 2339 2541 -773 27 0 0 0 chr9 15591162 15591189 -126680255 + AT_rich Low_complexity Low_complexity 1 27 0 564 266 23 75 chr9 15591428 15591733 -126679711 + L2 LINE L2 3025 3313 0 1985 101 52 11 chr9 15591764 15592050 -126679394 + AluSx SINE Alu 1 298 -14 252 0 0 0 chr9 15594493 15594521 -126676923 + (A)n Simple_repeat Simple_repeat 1 28 0 288 263 0 13 chr9 15595077 15595153 -126676291 + C-rich Low_complexity Low_complexity 3 77 0 243 0 0 0 chr9 15596606 15596633 -126674811 + (A)n Simple_repeat Simple_repeat 1 27 0 194 295 27 89 chr9 15597680 15597792 -126673652 - L2 LINE L2 -2855 459 355 360 0 0 0 chr9 15598165 15598205 -126673239 + (CA)n Simple_repeat Simple_repeat 2 41 0 377 313 43 18 chr9 15600460 15600623 -126670821 + MIR SINE MIR 40 206 -56 315 104 0 0 chr9 15601237 15601285 -126670159 + (CA)n Simple_repeat Simple_repeat 1 48 0 614 265 60 0 chr9 15604115 15604266 -126667178 + MIR SINE MIR 40 199 -63 289 293 87 33 chr9 15606556 15606706 -126664738 - MIR SINE MIR -70 192 35 566 273 70 31 chr9 15606710 15606937 -126664507 + MIR SINE MIR 24 259 -3 313 309 75 11 chr9 15607945 15608123 -126663321 + MIR SINE MIR 8 193 -69 2244 106 3 0 chr9 15609044 15609337 -126662107 - AluSx SINE Alu -18 294 1 509 245 221 14 chr9 15609466 15609674 -126661770 + MIR SINE MIR 7 257 -5 335 330 13 3 chr9 15609776 15609904 -126661540 - MIR SINE MIR -62 146 34 437 280 127 0 chr9 15610585 15610703 -126660741 + L2 LINE L2 3138 3270 -2 2456 35 14 0 chr9 15611065 15611354 -126660090 + AluY SINE Alu 1 293 -18 2035 82 14 11 chr9 15611354 15611635 -126659809 - AluSg SINE Alu -28 282 1 315 71 0 0 chr9 15612997 15613039 -126658405 + (TG)n Simple_repeat Simple_repeat 2 43 0 198 103 0 0 chr9 15613039 15613068 -126658376 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 22 80 0 0 chr9 15613079 15613129 -126658315 + AT_rich Low_complexity Low_complexity 1 50 0 310 227 0 0 chr9 15613137 15613203 -126658241 - L1MC4 LINE L1 -1337 6705 6640 341 222 19 0 chr9 15613453 15613561 -126657883 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 382 362 81 0 chr9 15614312 15614522 -126656922 - MIR SINE MIR -16 246 20 1998 120 14 4 chr9 15615117 15615393 -126656051 + AluSx SINE Alu 1 279 -33 21 57 0 0 chr9 15615471 15615506 -126655938 + AT_rich Low_complexity Low_complexity 1 35 0 237 288 163 0 chr9 15616136 15616216 -126655228 + MIR3 SINE MIR 102 194 -14 295 324 38 19 chr9 15616460 15616565 -126654879 - MIR3 SINE MIR -11 197 91 2136 69 0 21 chr9 15619259 15619580 -126651864 + AluY SINE Alu 1 315 0 615 237 26 0 chr9 15620169 15620321 -126651123 - MIR SINE MIR -57 205 50 1584 195 29 11 chr9 15620360 15620709 -126650735 + MLT1A1 LTR MaLR 11 365 0 22 0 0 0 chr9 15621802 15621824 -126649620 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr9 15621894 15621939 -126649505 + AT_rich Low_complexity Low_complexity 1 45 0 210 171 0 0 chr9 15625480 15625521 -126645923 + CT-rich Low_complexity Low_complexity 4 44 0 218 152 0 43 chr9 15626638 15626684 -126644760 + C-rich Low_complexity Low_complexity 2 45 0 24 32 0 0 chr9 15629944 15629975 -126641469 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 15630250 15630271 -126641173 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 15633864 15633886 -126637558 + AT_rich Low_complexity Low_complexity 1 22 0 246 128 0 0 chr9 15639024 15639063 -126632381 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr9 15640545 15640570 -126630874 + (T)n Simple_repeat Simple_repeat 1 25 0 234 0 0 0 chr9 15644116 15644142 -126627302 + (A)n Simple_repeat Simple_repeat 1 26 0 258 176 0 0 chr9 15644336 15644387 -126627057 + (TG)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr9 15644710 15644731 -126626713 + GC_rich Low_complexity Low_complexity 1 21 0 35 54 0 0 chr9 15647194 15647250 -126624194 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr9 15647864 15647894 -126623550 + AT_rich Low_complexity Low_complexity 1 30 0 192 40 0 0 chr9 15649854 15649879 -126621565 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1714 154 7 21 chr9 15650193 15650479 -126620965 - AluJb SINE Alu -18 294 13 22 0 0 0 chr9 15650502 15650524 -126620920 + AT_rich Low_complexity Low_complexity 1 22 0 418 298 73 0 chr9 15650932 15651110 -126620334 + Charlie8 DNA MER1_type 84 274 -2143 399 283 58 22 chr9 15651184 15651322 -126620122 - MIR3 SINE MIR -48 160 18 2359 108 0 0 chr9 15651549 15651855 -126619589 - AluSg SINE Alu -4 306 1 2290 92 0 13 chr9 15651884 15652199 -126619245 + AluY SINE Alu 1 311 0 181 231 51 51 chr9 15653173 15653251 -126618193 - MIR SINE MIR -1 261 184 699 253 25 5 chr9 15653434 15653636 -126617808 - MARNA DNA Mariner -146 440 235 453 327 70 19 chr9 15653704 15653918 -126617526 + MIR SINE MIR 28 252 -10 2332 87 7 0 chr9 15654093 15654393 -126617051 + AluSx SINE Alu 1 302 -10 224 292 15 0 chr9 15654558 15654623 -126616821 - L2 LINE L2 -13 3300 3235 694 296 11 5 chr9 15655235 15655421 -126616023 - MIR SINE MIR -61 201 15 2061 270 67 18 chr9 15655779 15656698 -126614746 - L1ME3A LINE L1 -20 6150 5181 602 237 0 24 chr9 15656704 15656722 -126614722 - L1MA10 LINE L1 0 6334 6317 3596 201 36 26 chr9 15656722 15658200 -126613244 - L1ME1 LINE L1 -5 6161 4670 187 254 48 32 chr9 15658528 15658591 -126612853 - MIR SINE MIR -13 249 186 481 210 20 0 chr9 15658680 15658780 -126612664 + MER45 DNA AcHobo 1 102 -938 243 0 0 0 chr9 15658783 15658810 -126612634 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1312 204 14 17 chr9 15658895 15659189 -126612255 - MER58B DNA MER1_type -43 298 6 398 286 4 0 chr9 15659192 15659419 -126612025 + L1ME3A LINE L1 5647 5944 -226 302 284 231 18 chr9 15659445 15659614 -126611830 + L1ME3A LINE L1 5927 6131 -39 2605 58 0 0 chr9 15660155 15660466 -126610978 + AluY SINE Alu 1 311 0 273 375 40 23 chr9 15660477 15660653 -126610791 + MIR SINE MIR 14 192 -70 291 259 23 6 chr9 15660751 15660932 -126610512 + CT-rich Low_complexity Low_complexity 1 184 0 314 206 16 0 chr9 15661246 15661309 -126610135 + MIR SINE MIR 199 262 0 305 362 37 5 chr9 15661577 15661765 -126609679 - L3 LINE CR1 -827 750 557 549 265 20 14 chr9 15662033 15662180 -126609264 - MIR3 SINE MIR -40 168 21 769 229 6 34 chr9 15662395 15662570 -126608874 - MER5B DNA MER1_type -5 173 4 206 170 170 0 chr9 15663309 15663362 -126608082 + MER91A DNA MER1_type 18 79 -117 469 132 8 41 chr9 15664466 15664587 -126606857 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 201 283 0 0 chr9 15664803 15664849 -126606595 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 399 41 0 0 chr9 15666129 15666178 -126605266 + (GA)n Simple_repeat Simple_repeat 2 50 0 208 269 0 0 chr9 15666230 15666308 -126605136 + (CAGA)n Simple_repeat Simple_repeat 2 79 0 30 0 0 0 chr9 15668153 15668183 -126603261 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 15669192 15669220 -126602224 + AT_rich Low_complexity Low_complexity 1 28 0 229 120 0 80 chr9 15669411 15669461 -126601983 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 197 78 0 47 chr9 15673855 15673891 -126597553 - MIR SINE MIR -63 145 112 22 0 0 0 chr9 15674169 15674191 -126597253 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr9 15675889 15675915 -126595529 + (T)n Simple_repeat Simple_repeat 1 26 0 220 340 9 19 chr9 15676018 15676124 -126595320 + MIR3 SINE MIR 87 191 -17 333 0 0 0 chr9 15676823 15676860 -126594584 + (TG)n Simple_repeat Simple_repeat 2 38 0 1971 147 110 8 chr9 15677162 15677516 -126593928 + MLT1B LTR MaLR 1 390 0 608 222 28 44 chr9 15677625 15677717 -126593727 + MER45A DNA AcHobo 1 90 -1491 2442 80 0 3 chr9 15677717 15678029 -126593415 + AluY SINE Alu 1 311 0 608 222 28 44 chr9 15678029 15678116 -126593328 + MER45A DNA AcHobo 90 177 -1 2370 212 8 12 chr9 15679691 15680196 -126591248 + L1MB8 LINE L1 5652 6154 -24 229 216 39 10 chr9 15680220 15680322 -126591122 + (TA)n Simple_repeat Simple_repeat 1 105 0 482 287 84 24 chr9 15680627 15680793 -126590651 + MLT1K LTR MaLR 12 187 -401 1795 232 27 10 chr9 15680793 15681203 -126590241 - MER63B DNA MER1_type 0 436 20 1428 259 75 25 chr9 15681210 15681689 -126589755 + MLT1D LTR MaLR 1 503 -2 324 206 175 21 chr9 15681718 15681815 -126589629 + MLT1K LTR MaLR 199 310 -278 22 80 0 0 chr9 15681976 15682026 -126589418 + AT_rich Low_complexity Low_complexity 1 50 0 2471 56 0 37 chr9 15682576 15682898 -126588546 - AluY SINE Alu -1 310 1 29 0 0 0 chr9 15683029 15683058 -126588386 + AT_rich Low_complexity Low_complexity 1 29 0 1523 201 7 7 chr9 15684656 15684964 -126586480 + AluJo SINE Alu 1 308 -4 568 236 69 0 chr9 15685000 15685144 -126586300 + MER69A DNA AcHobo 19 172 -5 216 171 49 0 chr9 15685623 15685664 -126585780 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 237 184 0 0 chr9 15685664 15685713 -126585731 + LTR66 LTR ERVL 395 443 -167 960 266 91 36 chr9 15685734 15686261 -126585183 - L1ME4a LINE L1 -74 6047 5492 476 234 35 35 chr9 15687058 15687199 -126584245 + MIR SINE MIR 119 259 -3 2223 116 3 3 chr9 15688521 15688824 -126582620 - AluSg SINE Alu -5 305 3 494 334 40 35 chr9 15689141 15689512 -126581932 - L2 LINE L2 0 3272 2900 3514 30 0 0 chr9 15689651 15690056 -126581388 + L1PA7 LINE L1 5722 6126 -28 431 120 40 80 chr9 15690109 15690209 -126581235 + L1PA8 LINE L1 6077 6172 0 358 206 199 15 chr9 15690903 15691034 -126580410 + MIR SINE MIR 85 239 -23 227 303 145 0 chr9 15691115 15691191 -126580253 + L2 LINE L2 3195 3281 -32 225 160 0 60 chr9 15691194 15691244 -126580200 - MIR SINE MIR -148 114 68 358 345 71 58 chr9 15691558 15692010 -126579434 + L2 LINE L2 2325 2782 -532 244 370 94 0 chr9 15692057 15692249 -126579195 + L2 LINE L2 2841 3050 -222 2255 111 0 0 chr9 15692855 15693144 -126578300 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr9 15693157 15693184 -126578260 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 290 229 18 110 chr9 15693469 15693578 -126577866 + MIR SINE MIR 25 106 -102 525 217 172 59 chr9 15693585 15693806 -126577638 + Charlie8 DNA MER1_type 2 247 -2170 235 231 123 15 chr9 15694246 15694311 -126577133 + Charlie8 DNA MER1_type 2337 2408 -9 336 111 0 0 chr9 15695667 15695721 -126575723 + (TG)n Simple_repeat Simple_repeat 1 54 0 218 254 0 0 chr9 15696232 15696287 -126575157 + CT-rich Low_complexity Low_complexity 1 55 0 1989 141 0 0 chr9 15696670 15696980 -126574464 + AluSx SINE Alu 1 310 0 636 271 104 88 chr9 15697107 15697418 -126574026 - MLT1J LTR MaLR -4 507 184 2207 103 7 10 chr9 15697418 15697720 -126573724 + AluSq SINE Alu 1 301 -12 636 271 104 88 chr9 15697720 15697907 -126573537 - MLT1J LTR MaLR -327 184 1 962 168 19 0 chr9 15698109 15698264 -126573180 - FAM SINE Alu -16 159 2 2137 130 0 3 chr9 15698561 15698860 -126572584 - AluSx SINE Alu -14 298 1 1385 206 25 11 chr9 15699282 15699559 -126571885 - AluJo SINE Alu -31 281 1 235 338 102 0 chr9 15700149 15700306 -126571138 + MIR SINE MIR 74 246 -16 2402 101 0 0 chr9 15700389 15700697 -126570747 - AluSc SINE Alu -1 308 1 207 0 0 0 chr9 15701716 15701739 -126569705 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2382 85 0 0 chr9 15701742 15702025 -126569419 - AluSq SINE Alu -30 283 1 249 309 169 0 chr9 15702764 15702900 -126568544 - MIR SINE MIR -52 210 52 848 40 0 0 chr9 15703039 15703139 -126568305 + AluSg/x SINE Alu 203 302 -7 2022 156 3 0 chr9 15703226 15703527 -126567917 - AluJb SINE Alu -4 308 7 277 176 0 15 chr9 15703820 15703913 -126567531 + L2 LINE L2 3187 3313 0 209 184 0 0 chr9 15704116 15704154 -126567290 + L2 LINE L2 3179 3216 -97 264 59 0 0 chr9 15704388 15704422 -126567022 + (GA)n Simple_repeat Simple_repeat 1 34 0 499 252 147 43 chr9 15704594 15704852 -126566592 + L1ME3A LINE L1 5554 5838 -332 603 273 20 10 chr9 15707145 15707343 -126564101 - MIR SINE MIR -21 241 42 352 226 25 57 chr9 15707592 15707751 -126563693 - L1ME4a LINE L1 -42 6079 5926 2045 155 0 0 chr9 15707827 15708123 -126563321 - AluSx SINE Alu -14 298 3 311 271 41 33 chr9 15708915 15709037 -126562407 + MER103 DNA DNA 2 124 -42 475 241 92 24 chr9 15709422 15709723 -126561721 + L1ME LINE L1 5152 5473 -755 242 298 29 29 chr9 15709740 15709844 -126561600 + L1ME LINE L1 5540 5643 -519 230 286 13 97 chr9 15710040 15710194 -126561250 + L1ME LINE L1 5647 5787 -383 633 189 0 24 chr9 15710252 15710379 -126561065 + AluJb SINE Alu 121 244 -68 652 188 11 22 chr9 15710406 15710587 -126560857 + GA-rich Low_complexity Low_complexity 2 180 0 530 303 17 11 chr9 15710935 15711110 -126560334 + MER5B DNA MER1_type 1 176 -2 363 231 0 0 chr9 15712289 15712367 -126559077 + MIR SINE MIR 83 160 -102 861 233 24 75 chr9 15712388 15712595 -126558849 + L1MC3 LINE L1 6772 6957 -828 2276 168 3 3 chr9 15712595 15712959 -126558485 + MLT1A1 LTR MaLR 1 364 -1 861 233 24 75 chr9 15712959 15713082 -126558362 + L1MC3 LINE L1 6957 7085 -700 345 306 0 10 chr9 15713090 15713188 -126558256 + MLT1F1 LTR MaLR 35 131 -436 705 157 60 15 chr9 15713196 15713330 -126558114 + L1MC3 LINE L1 7203 7342 -443 3937 159 20 44 chr9 15713330 15714073 -126557371 + MER50 LTR ERV1 1 725 -9 2184 174 34 5 chr9 15714073 15714487 -126556957 + L1MC3 LINE L1 7351 7776 -9 1752 172 31 0 chr9 15714488 15714778 -126556666 + AluJb SINE Alu 1 299 -13 278 306 74 0 chr9 15714786 15714894 -126556550 + MIR SINE MIR 147 262 0 212 308 0 0 chr9 15716052 15716104 -126555340 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 404 342 51 25 chr9 15716107 15716265 -126555179 - L2 LINE L2 -9 3263 3102 2576 127 25 0 chr9 15716366 15716721 -126554723 - THE1B LTR MaLR 0 364 1 326 290 84 0 chr9 15716774 15716881 -126554563 + MIR SINE MIR 28 143 -119 252 0 0 0 chr9 15717769 15717797 -126553647 + (T)n Simple_repeat Simple_repeat 1 28 0 204 200 0 0 chr9 15719134 15719169 -126552275 + polypyrimidine Low_complexity Low_complexity 2 36 0 182 333 14 0 chr9 15720008 15720077 -126551367 - MIR SINE MIR 0 262 193 1141 191 89 57 chr9 15721011 15721325 -126550119 + MER33 DNA MER1_type 1 324 0 284 367 25 25 chr9 15723484 15723604 -126547840 + L2 LINE L2 3143 3262 -10 30 27 0 0 chr9 15724888 15724925 -126546519 + AT_rich Low_complexity Low_complexity 1 37 0 273 57 0 0 chr9 15725546 15725581 -126545863 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 378 253 11 0 chr9 15726328 15726415 -126545029 - L2 LINE L2 0 3272 3185 373 320 62 65 chr9 15726650 15726975 -126544469 + LTR67 LTR ERVL 83 406 -151 1231 252 95 27 chr9 15726991 15727403 -126544041 + MLT1J1 LTR MaLR 4 443 -3 916 286 48 33 chr9 15728669 15729018 -126542426 + MLT1J1 LTR MaLR 79 423 -23 417 241 23 45 chr9 15729067 15729200 -126542244 + LTR67 LTR ERVL 418 547 -10 1591 210 3 3 chr9 15729728 15730023 -126541421 - AluJo SINE Alu -12 300 6 408 313 71 65 chr9 15730446 15730756 -126540688 - MLT1J LTR MaLR -181 330 19 25 0 0 0 chr9 15730798 15730823 -126540621 + AT_rich Low_complexity Low_complexity 1 25 0 964 237 19 10 chr9 15730833 15731040 -126540404 - MIR SINE MIR -21 241 33 238 163 0 41 chr9 15731079 15731128 -126540316 + MER63 DNA MER1_type 2 48 -882 1322 148 14 0 chr9 15731182 15731399 -126540045 + MER63 DNA MER1_type 837 1056 -6 2152 198 88 29 chr9 15733747 15734238 -126537206 + MLT1F LTR MaLR 12 531 -11 305 336 151 0 chr9 15734316 15734435 -126537009 + L2 LINE L2 3136 3272 0 264 363 55 7 chr9 15735465 15735611 -126535833 + MIR SINE MIR 21 173 -89 2322 100 10 0 chr9 15736197 15736498 -126534946 + AluSc SINE Alu 1 304 -5 544 306 60 0 chr9 15736575 15736741 -126534703 + MIR SINE MIR 76 250 -12 2339 209 43 82 chr9 15736966 15737575 -126533869 - MLT1E LTR MaLR -2 591 7 332 366 32 21 chr9 15737975 15738161 -126533283 + L3b LINE CR1 1230 1417 -166 584 178 10 0 chr9 15738182 15738283 -126533161 + Tigger3b DNA MER2_type 1 102 -1129 5903 114 29 8 chr9 15738286 15738927 -126532517 + Tigger3b DNA MER2_type 284 951 -2077 2374 92 3 3 chr9 15738927 15739232 -126532212 - AluSg SINE Alu -5 305 1 5903 114 29 8 chr9 15739232 15739495 -126531949 + Tigger3b DNA MER2_type 951 1207 -24 401 350 0 62 chr9 15739691 15739816 -126531628 + MER5A DNA MER1_type 8 118 -71 2421 65 10 10 chr9 15739816 15740122 -126531322 - AluSq SINE Alu -7 306 1 401 350 0 62 chr9 15740122 15740190 -126531254 + MER5A DNA MER1_type 118 189 0 203 133 0 0 chr9 15741330 15741360 -126530084 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 608 218 188 3 chr9 15741484 15741634 -126529810 + MER45A DNA AcHobo 1 171 -7 202 375 52 0 chr9 15741965 15742061 -126529383 - MIR SINE MIR -56 152 52 2230 118 3 0 chr9 15742206 15742512 -126528932 + AluSx SINE Alu 1 307 -5 201 196 0 0 chr9 15743192 15743238 -126528206 + CT-rich Low_complexity Low_complexity 4 49 0 246 316 0 13 chr9 15744683 15744759 -126526685 - MLT1K LTR MaLR -329 259 185 709 158 123 0 chr9 15746394 15746540 -126524904 - MER103 DNA DNA -1 165 2 216 0 0 0 chr9 15747649 15747673 -126523771 + (T)n Simple_repeat Simple_repeat 1 24 0 286 328 78 9 chr9 15747784 15747900 -126523544 + L2 LINE L2 3149 3272 0 233 366 106 14 chr9 15748432 15748574 -126522870 + L2 LINE L2 3112 3266 -6 216 97 0 0 chr9 15749299 15749330 -126522114 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1005 272 16 8 chr9 15749333 15749587 -126521857 - MIR SINE MIR -4 258 3 2162 140 7 3 chr9 15749979 15750287 -126521157 - AluJb SINE Alu -3 309 1 236 280 107 0 chr9 15751361 15751436 -126520008 - MIR SINE MIR -133 129 47 1900 149 0 0 chr9 15752616 15752923 -126518521 - AluSx SINE Alu 0 307 1 188 241 56 37 chr9 15753695 15753749 -126517695 - MIR SINE MIR -149 113 59 486 256 92 61 chr9 15754144 15754437 -126517007 + MLT1K LTR MaLR 186 487 -101 695 0 0 0 chr9 15755981 15756053 -126515391 - tRNA-His-CAC tRNA tRNA -3 72 1 264 310 0 0 chr9 15757310 15757381 -126514063 + MER113 DNA MER1_type? 4 74 -447 1021 230 39 9 chr9 15757415 15757645 -126513799 + MIR SINE MIR 21 257 -5 695 262 103 24 chr9 15757653 15757993 -126513451 + MER113 DNA MER1_type? 114 480 -41 724 307 118 12 chr9 15758027 15758359 -126513085 - MLT1I LTR MaLR -40 369 3 236 371 33 26 chr9 15758799 15758950 -126512494 - L2 LINE L2 0 3272 3121 581 265 15 46 chr9 15759034 15759230 -126512214 + MIR3 SINE MIR 6 195 -13 333 313 54 14 chr9 15759429 15759576 -126511868 + L3b LINE CR1 1328 1480 -103 321 169 0 0 chr9 15760053 15760112 -126511332 + (TG)n Simple_repeat Simple_repeat 1 59 0 1700 162 4 0 chr9 15761130 15761401 -126510043 + AluJb SINE Alu 1 272 -40 800 213 59 0 chr9 15761425 15761594 -126509850 + MIR SINE MIR 80 258 -4 188 160 40 133 chr9 15762237 15762312 -126509132 + L2 LINE L2 3159 3226 -46 240 143 0 0 chr9 15763176 15763218 -126508226 + (A)n Simple_repeat Simple_repeat 1 42 0 200 188 0 0 chr9 15763620 15763652 -126507792 + polypyrimidine Low_complexity Low_complexity 2 33 0 578 266 115 18 chr9 15763993 15764219 -126507225 - MIR SINE MIR -3 259 12 320 176 24 47 chr9 15764344 15764429 -126507015 + MIR SINE MIR 110 192 -70 1357 171 121 44 chr9 15764476 15764867 -126506577 - MLT1C LTR MaLR 0 467 3 386 317 64 36 chr9 15765311 15765592 -126505852 + L2 LINE L2 2188 2476 -838 268 352 40 40 chr9 15765808 15765933 -126505511 + L2 LINE L2 3143 3267 -5 587 291 15 10 chr9 15766157 15766353 -126505091 - L2 LINE L2 -964 2350 2154 188 241 48 60 chr9 15766483 15766566 -126504878 - L2 LINE L2 -1064 2250 2169 618 213 6 25 chr9 15766986 15767146 -126504298 - L1ME3A LINE L1 -213 5940 5784 1054 264 56 60 chr9 15767162 15767791 -126503653 - L1ME3A LINE L1 -1794 4335 3710 680 311 70 39 chr9 15767849 15768588 -126502856 - L1ME3A LINE L1 -4579 1731 970 230 210 33 161 chr9 15768794 15769099 -126502345 - L1MC5 LINE L1 -52 7909 7644 680 299 59 29 chr9 15769160 15769615 -126501829 - L1ME3A LINE L1 -5204 915 447 22 0 0 0 chr9 15770428 15770450 -126500994 + AT_rich Low_complexity Low_complexity 1 22 0 734 251 17 0 chr9 15771318 15771493 -126499951 - MER5B DNA MER1_type 0 178 1 2067 108 0 18 chr9 15771689 15771975 -126499469 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr9 15771982 15772005 -126499439 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2120 78 0 0 chr9 15772022 15772306 -126499138 - L1PA6 LINE L1 -11 6143 5860 568 205 91 124 chr9 15772332 15772814 -126498630 + MER110A LTR ERV1 1 466 -2 198 277 179 18 chr9 15772989 15773101 -126498343 - MIR SINE MIR -99 163 34 267 186 39 108 chr9 15773391 15773493 -126497951 - L1MC5 LINE L1 -48 7913 7819 328 233 63 50 chr9 15773525 15773571 -126497873 - L1MC5 LINE L1 -222 7739 7695 180 0 0 0 chr9 15773571 15773591 -126497853 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 328 233 63 50 chr9 15773591 15773703 -126497741 - L1MC5 LINE L1 -266 7695 7579 693 36 0 0 chr9 15774376 15774471 -126496973 + (GGAAA)n Simple_repeat Simple_repeat 1 179 0 693 36 0 0 chr9 15774471 15774555 -126496889 + (GGAAA)n Simple_repeat Simple_repeat 5 88 0 2144 79 43 0 chr9 15775842 15776119 -126495325 + AluSc SINE Alu 1 289 -20 900 263 62 36 chr9 15776818 15777122 -126494322 + MLT1I LTR MaLR 98 409 0 246 184 0 0 chr9 15777143 15777192 -126494252 + L2 LINE L2 3265 3313 0 317 155 17 0 chr9 15778150 15778208 -126493236 - MER116 DNA Mariner -21 59 1 1211 292 47 43 chr9 15778492 15779193 -126492251 + L1MC4a LINE L1 5255 5958 -1850 19435 37 1 0 chr9 15779412 15782569 -126488875 + L1PA4 LINE L1 2995 6152 -3 24 32 0 0 chr9 15782697 15782728 -126488716 + AT_rich Low_complexity Low_complexity 1 31 0 550 343 0 27 chr9 15782738 15782957 -126488487 + L2 LINE L2 2665 2877 -437 2546 61 0 0 chr9 15784312 15784623 -126486821 - AluY SINE Alu 0 311 1 25 65 0 0 chr9 15785093 15785139 -126486305 + AT_rich Low_complexity Low_complexity 1 46 0 259 150 20 60 chr9 15785147 15785247 -126486197 + (TTAA)n Simple_repeat Simple_repeat 3 98 0 317 277 96 0 chr9 15785287 15785464 -126485980 + L1M4 LINE L1 4411 4604 -1542 2576 39 13 0 chr9 15785696 15786001 -126485443 - AluY SINE Alu -2 309 1 576 278 116 5 chr9 15786792 15787008 -126484436 + MIR SINE MIR 23 262 0 324 0 0 0 chr9 15787614 15787650 -126483794 + (CA)n Simple_repeat Simple_repeat 2 37 0 876 128 12 35 chr9 15787808 15787980 -126483464 - MER20 DNA MER1_type -26 193 26 266 213 46 28 chr9 15789608 15789716 -126481728 + (TTCA)n Simple_repeat Simple_repeat 3 112 0 413 291 48 0 chr9 15789720 15789823 -126481621 - L2 LINE L2 -4 3309 3202 423 298 146 6 chr9 15789835 15790006 -126481438 - MIR SINE MIR -48 214 20 291 294 94 25 chr9 15790761 15790921 -126480523 - MIR SINE MIR -26 236 66 662 232 20 13 chr9 15792089 15792240 -126479204 + MIR SINE MIR 79 230 -32 477 265 54 30 chr9 15792808 15792974 -126478470 + MIR3 SINE MIR 21 190 -18 1263 186 18 65 chr9 15794355 15794615 -126476829 + MER5C DNA MER1_type 3 245 -79 2388 58 0 3 chr9 15794615 15794907 -126476537 + AluY SINE Alu 16 306 -5 1263 186 18 65 chr9 15794907 15794984 -126476460 + MER5C DNA MER1_type 245 324 0 1950 184 37 3 chr9 15796174 15796527 -126474917 - MLT1A1 LTR MaLR 0 365 1 1353 194 95 0 chr9 15796531 15796814 -126474630 - MLT1A1-int LTR MaLR -6 1729 1420 1830 174 22 3 chr9 15796851 15797173 -126474271 - MLT2B1 LTR ERVL -192 328 1 650 211 58 23 chr9 15797182 15797353 -126474091 - MIR SINE MIR -68 194 18 386 292 94 21 chr9 15800599 15800977 -126470467 - L1MC4a LINE L1 -302 5819 5529 269 276 114 9 chr9 15801626 15801731 -126469713 + MIR SINE MIR 30 145 -63 362 126 0 17 chr9 15801919 15801985 -126469459 + L1MB7 LINE L1 6049 6113 -71 234 242 0 0 chr9 15801988 15802054 -126469390 + GA-rich Low_complexity Low_complexity 1 66 0 192 40 0 0 chr9 15802069 15802094 -126469350 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 222 326 130 22 chr9 15802137 15802367 -126469077 - MIR SINE MIR -6 256 2 1144 254 37 59 chr9 15803064 15803220 -126468224 + LTR16C LTR ERVL 96 254 -237 180 0 0 0 chr9 15803220 15803240 -126468204 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 321 26 0 0 chr9 15803239 15803277 -126468167 + (TA)n Simple_repeat Simple_repeat 1 38 0 1144 254 37 59 chr9 15803240 15803525 -126467919 + LTR16C LTR ERVL 254 491 0 183 120 0 0 chr9 15804003 15804028 -126467416 + L3b LINE CR1 1531 1555 -28 21 0 0 0 chr9 15805255 15805276 -126466168 + AT_rich Low_complexity Low_complexity 1 21 0 429 289 224 10 chr9 15805527 15805728 -126465716 + MIR SINE MIR 11 254 -8 366 218 57 65 chr9 15806190 15806314 -126465130 - L2 LINE L2 0 3313 3191 180 333 0 0 chr9 15806732 15806786 -126464658 - L2 LINE L2 -1 3312 3259 1283 209 57 43 chr9 15806851 15807038 -126464406 - MLT1A2 LTR MaLR 0 374 191 240 35 0 0 chr9 15807038 15807067 -126464377 + (GA)n Simple_repeat Simple_repeat 2 30 0 1283 209 57 43 chr9 15807067 15807248 -126464196 - MLT1A2 LTR MaLR -183 191 1 357 289 26 158 chr9 15807543 15807636 -126463808 - L2 LINE L2 0 3272 3168 2257 124 0 0 chr9 15807636 15807943 -126463501 + AluSx SINE Alu 3 309 -3 357 289 26 158 chr9 15807943 15808268 -126463176 - L2 LINE L2 -104 3168 2909 370 301 71 68 chr9 15808297 15808606 -126462838 - L2 LINE L2 -1153 2161 1852 240 35 0 0 chr9 15808738 15808767 -126462677 + (CA)n Simple_repeat Simple_repeat 2 30 0 326 257 46 0 chr9 15808826 15808935 -126462509 + L1ME4a LINE L1 6005 6118 -3 1649 178 52 14 chr9 15810133 15810420 -126461024 + AluJo SINE Alu 1 298 -14 230 339 16 48 chr9 15810420 15810544 -126460900 + MER5A DNA MER1_type 44 163 -26 235 314 85 8 chr9 15811000 15811118 -126460326 + MIR SINE MIR 122 248 -14 25 95 0 0 chr9 15811782 15811856 -126459588 + AT_rich Low_complexity Low_complexity 1 74 0 545 268 131 58 chr9 15811863 15812176 -126459268 - L1MC4a LINE L1 -1942 5866 5531 933 273 121 13 chr9 15812333 15813089 -126458355 + L1ME LINE L1 4968 5818 -348 633 291 138 0 chr9 15813099 15813288 -126458156 + MIR SINE MIR 28 242 -20 2647 119 19 21 chr9 15814057 15814123 -126457321 - MSTA LTR MaLR -1 427 362 2329 79 0 0 chr9 15814123 15814468 -126456976 + AluY SINE Alu 1 311 0 2647 119 19 21 chr9 15814468 15814829 -126456615 - MSTA LTR MaLR -66 362 1 214 262 243 0 chr9 15814901 15815008 -126456436 + MIR SINE MIR 14 146 -116 196 241 0 69 chr9 15815109 15815167 -126456277 - MIR SINE MIR -136 72 19 748 260 78 17 chr9 15817915 15818146 -126453298 + MIR SINE MIR 5 249 -13 1709 169 30 30 chr9 15818166 15818527 -126452917 - MER46B DNA MER2_type 0 236 1 420 218 129 67 chr9 15819927 15820120 -126451324 + MLT1K LTR MaLR 374 578 -10 361 258 114 53 chr9 15820144 15820276 -126451168 - MIR3 SINE MIR -64 144 5 603 102 0 0 chr9 15820806 15820894 -126450550 + (TCCC)n Simple_repeat Simple_repeat 4 91 0 329 235 122 10 chr9 15820902 15821000 -126450444 - L2 LINE L2 -10 3262 3154 516 176 0 0 chr9 15821030 15821132 -126450312 + (TG)n Simple_repeat Simple_repeat 1 102 0 324 344 19 17 chr9 15821592 15821782 -126449662 - MIR SINE MIR -50 212 22 194 288 188 12 chr9 15822099 15822179 -126449265 + L2 LINE L2 2826 2919 -395 * 679 236 14 0 chr9 15822171 15822319 -126449125 - MIR SINE MIR -100 162 13 185 103 0 0 chr9 15822709 15822738 -126448706 + L2 LINE L2 3285 3313 0 225 268 98 24 chr9 15823530 15823612 -126447832 + MIR SINE MIR 116 203 -59 897 265 57 16 chr9 15824093 15824410 -126447034 - MER46C DNA MER2_type -3 335 6 31 26 0 0 chr9 15824741 15824779 -126446665 + AT_rich Low_complexity Low_complexity 1 38 0 7710 169 14 47 chr9 15824781 15827435 -126444009 - L1PA16 LINE L1 -16 6150 3614 677 197 94 18 chr9 15827966 15828189 -126443255 + MER69 DNA AcHobo 2153 2392 -134 187 205 77 0 chr9 15828360 15828399 -126443045 - L2 LINE L2 -26 3246 3205 22 80 0 0 chr9 15829069 15829119 -126442325 + AT_rich Low_complexity Low_complexity 1 50 0 363 73 0 0 chr9 15829981 15830036 -126441408 + (CA)n Simple_repeat Simple_repeat 2 56 0 249 203 40 0 chr9 15830119 15830193 -126441251 + (TA)n Simple_repeat Simple_repeat 1 77 0 203 224 0 15 chr9 15830233 15830300 -126441144 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 447 254 61 18 chr9 15831123 15831237 -126440207 - L2 LINE L2 -5 3308 3190 2224 105 3 0 chr9 15831951 15832237 -126439207 - AluSx SINE Alu -25 287 1 373 139 0 105 chr9 15833099 15833185 -126438259 - L1ME LINE L1 -515 5606 5530 29 60 0 0 chr9 15833427 15833477 -126437967 + AT_rich Low_complexity Low_complexity 1 50 0 517 332 100 17 chr9 15833480 15833721 -126437723 - MIR SINE MIR 0 262 2 449 264 194 38 chr9 15833756 15834154 -126437290 - L1M4 LINE L1 -1310 4836 4377 328 298 0 11 chr9 15834741 15834835 -126436609 + CT-rich Low_complexity Low_complexity 4 96 0 218 176 0 20 chr9 15835371 15835389 -126436055 + A-rich Low_complexity Low_complexity 2 19 -32 2416 107 0 0 chr9 15835389 15835698 -126435746 + AluSg SINE Alu 1 309 -1 218 176 0 20 chr9 15835698 15835730 -126435714 + A-rich Low_complexity Low_complexity 19 51 0 686 263 58 5 chr9 15835796 15835986 -126435458 + MIR SINE MIR 48 247 -15 333 118 0 0 chr9 15836341 15836392 -126435052 + (CA)n Simple_repeat Simple_repeat 2 52 0 437 264 50 57 chr9 15836832 15836972 -126434472 + MER5B DNA MER1_type 40 178 0 265 342 128 11 chr9 15837352 15837539 -126433905 - MIR SINE MIR -21 241 33 266 216 162 42 chr9 15837543 15837710 -126433734 + MER5A DNA MER1_type 3 189 0 361 265 29 10 chr9 15837776 15837878 -126433566 - MER5A DNA MER1_type -77 112 9 22 0 0 0 chr9 15838291 15838313 -126433131 + AT_rich Low_complexity Low_complexity 1 22 0 237 312 11 32 chr9 15839834 15839927 -126431517 + L2 LINE L2 2893 2983 -289 217 259 35 0 chr9 15840026 15840084 -126431360 + L2 LINE L2 3178 3237 -76 832 295 34 4 chr9 15841704 15841938 -126429506 - MIR SINE MIR -19 243 3 544 250 33 11 chr9 15842717 15842897 -126428547 - MER112 DNA MER1_type -5 255 72 590 273 32 43 chr9 15843448 15843635 -126427809 + MIR SINE MIR 47 231 -31 217 300 170 10 chr9 15846138 15846238 -126425206 - L2 LINE L2 -8 3305 3190 191 219 0 0 chr9 15846963 15847004 -126424440 - MIR SINE MIR -62 200 160 266 373 39 0 chr9 15847429 15847582 -126423862 + MIR SINE MIR 70 228 -34 184 333 30 0 chr9 15848406 15848472 -126422972 - L2 LINE L2 -6 3266 3199 230 273 15 15 chr9 15849656 15849722 -126421722 + L2 LINE L2 3243 3308 -5 237 65 0 0 chr9 15852443 15852474 -126418970 + (GA)n Simple_repeat Simple_repeat 1 31 0 195 204 0 0 chr9 15852938 15852982 -126418462 + A-rich Low_complexity Low_complexity 1 44 0 216 196 22 0 chr9 15854446 15854492 -126416952 + GA-rich Low_complexity Low_complexity 3 49 0 183 80 0 0 chr9 15855724 15855749 -126415695 + (T)n Simple_repeat Simple_repeat 1 25 0 285 333 56 0 chr9 15855967 15856057 -126415387 - L2 LINE L2 -22 3250 3156 293 233 27 14 chr9 15857470 15857543 -126413901 + MIR SINE MIR 46 119 -143 210 309 10 10 chr9 15857631 15857728 -126413716 + GA-rich Low_complexity Low_complexity 2 98 0 586 265 65 25 chr9 15858040 15858228 -126413216 + MIR SINE MIR 1 199 -63 546 244 0 0 chr9 15858228 15858363 -126413081 + L1MA10 LINE L1 6198 6332 -2 586 265 65 25 chr9 15858363 15858374 -126413070 + MIR SINE MIR 199 208 -54 182 318 171 47 chr9 15858427 15858556 -126412888 - MIR3 SINE MIR -45 163 19 276 175 31 82 chr9 15860337 15860434 -126411010 + L1MD2 LINE L1 6268 6359 0 429 267 121 9 chr9 15861229 15861345 -126410099 - L2 LINE L2 -1 3271 3143 1763 50 0 0 chr9 15861478 15861679 -126409765 + AluY SINE Alu 1 201 -110 3143 251 37 21 chr9 15861679 15862895 -126408549 - L1M4 LINE L1 -1894 4252 3018 279 356 37 7 chr9 15862947 15863082 -126408362 - L3 LINE CR1 -239 1338 1200 195 146 24 49 chr9 15863395 15863436 -126408008 + MIR SINE MIR 36 75 -133 289 333 32 32 chr9 15864190 15864316 -126407128 + MIR3 SINE MIR 13 138 -70 203 306 0 28 chr9 15864973 15865045 -126406399 + CT-rich Low_complexity Low_complexity 1 70 0 383 293 190 19 chr9 15865387 15865592 -126405852 - MIR SINE MIR 0 262 23 252 224 75 0 chr9 15865790 15865857 -126405587 + L2 LINE L2 3242 3313 0 825 84 15 0 chr9 15867653 15867784 -126403660 + L1MA5A LINE L1 6164 6296 -1 24 0 0 0 chr9 15867911 15867935 -126403509 + AT_rich Low_complexity Low_complexity 1 24 0 230 279 49 16 chr9 15868008 15868130 -126403314 - L1ME LINE L1 -203 5918 5793 2232 165 70 5 chr9 15868130 15868530 -126402914 - MSTB LTR MaLR 0 426 1 8117 166 67 19 chr9 15868530 15870105 -126401339 - MSTB-int LTR MaLR 0 1651 1 2048 151 18 87 chr9 15870107 15870558 -126400886 - MSTB LTR MaLR -6 420 1 434 300 88 9 chr9 15870751 15870978 -126400466 - MLT1H LTR MaLR -244 305 61 319 286 149 30 chr9 15871031 15871199 -126400245 - L1ME LINE L1 -410 5711 5524 201 39 0 0 chr9 15871257 15871283 -126400161 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 596 279 81 63 chr9 15871551 15872118 -126399326 - L1MC4a LINE L1 -1978 5830 5254 1056 296 98 42 chr9 15872126 15872904 -126398540 - L1MC4a LINE L1 -941 5205 4385 1485 126 79 7 chr9 15873178 15873455 -126397989 - L1MB3 LINE L1 -3 6180 5884 22 0 0 0 chr9 15873572 15873594 -126397850 + AT_rich Low_complexity Low_complexity 1 22 0 204 125 0 0 chr9 15874002 15874034 -126397410 + (A)n Simple_repeat Simple_repeat 1 32 0 221 234 31 31 chr9 15874812 15874876 -126396568 + L2 LINE L2 3204 3267 -5 331 286 246 14 chr9 15874886 15875106 -126396338 + L3 LINE CR1 389 659 -918 282 349 9 0 chr9 15875665 15875771 -126395673 - L2 LINE L2 -4 3268 3162 187 280 40 13 chr9 15875776 15875851 -126395593 + L3 LINE CR1 676 752 -825 1585 158 76 10 chr9 15875859 15876150 -126395294 - AluJb SINE Alu -2 310 1 202 216 0 0 chr9 15876577 15876614 -126394830 + L2 LINE L2 3259 3295 -18 330 286 77 62 chr9 15877523 15877896 -126393548 - L2 LINE L2 -1 3271 2821 413 275 131 6 chr9 15877957 15878117 -126393327 + MIR SINE MIR 4 183 -79 203 156 0 0 chr9 15878217 15878249 -126393195 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1705 181 0 13 chr9 15878277 15878591 -126392853 - AluJb SINE Alu 0 312 3 983 249 93 71 chr9 15878905 15879484 -126391960 + HAL1 LINE L1 1915 2506 -1 215 331 152 43 chr9 15879637 15880540 -126390904 - L2 LINE L2 -575 2739 1739 22 0 0 0 chr9 15881055 15881077 -126390367 + AT_rich Low_complexity Low_complexity 1 22 0 491 0 0 17 chr9 15881119 15881179 -126390265 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 224 296 57 38 chr9 15881301 15881460 -126389984 - L2 LINE L2 -1635 1679 1518 2595 88 36 6 chr9 15881468 15881832 -126389612 + THE1C LTR MaLR 1 375 0 268 229 29 14 chr9 15882182 15882252 -126389192 - MER58 DNA MER1_type -5 2415 2345 1975 140 20 11 chr9 15882261 15882617 -126388827 + L1MB2 LINE L1 5810 6168 -3 1384 124 76 0 chr9 15882874 15883084 -126388360 + MER30 DNA MER1_type 5 230 0 1029 209 73 10 chr9 15884405 15884707 -126386737 + MER33 DNA MER1_type 3 323 -1 243 0 0 0 chr9 15886658 15886685 -126384759 + (CA)n Simple_repeat Simple_repeat 1 27 0 366 243 68 81 chr9 15887478 15887626 -126383818 - MIR3 SINE MIR -11 197 52 1039 224 175 38 chr9 15887699 15888168 -126383276 - MLT1H LTR MaLR -3 546 14 181 294 56 95 chr9 15888192 15888318 -126383126 + L2 LINE L2 2854 2974 -339 1137 286 83 36 chr9 15888412 15889017 -126382427 + HAL1 LINE L1 50 686 -1821 2204 120 3 0 chr9 15889017 15889325 -126382119 + AluSx SINE Alu 2 310 -2 234 136 0 0 chr9 15889336 15889380 -126382064 + (GAAAA)n Simple_repeat Simple_repeat 5 48 0 369 277 86 121 chr9 15889380 15889636 -126381808 + HAL1 LINE L1 667 913 -1594 226 306 82 36 chr9 15889651 15889847 -126381597 + HAL1 LINE L1 2230 2434 -73 237 213 21 0 chr9 15890418 15890465 -126380979 + GA-rich Low_complexity Low_complexity 3 50 0 2268 108 0 0 chr9 15890737 15891034 -126380410 - AluSq SINE Alu -16 297 1 9810 93 5 5 chr9 15891332 15892814 -126378630 - L1PA7 LINE L1 -2113 4033 2551 9855 79 3 0 chr9 15892814 15894925 -126376519 + L1PA7 LINE L1 4041 6154 0 219 283 67 0 chr9 15895166 15895226 -126376218 + L2 LINE L2 3208 3271 -1 194 226 172 43 chr9 15895521 15895614 -126375830 + MIR SINE MIR 151 255 -7 1846 167 0 0 chr9 15895914 15896196 -126375248 - AluJb SINE Alu -30 282 1 273 219 89 32 chr9 15896566 15896689 -126374755 + L1ME4a LINE L1 5946 6075 -46 525 16 0 0 chr9 15897007 15897069 -126374375 + (TC)n Simple_repeat Simple_repeat 2 63 0 324 70 0 0 chr9 15897068 15897111 -126374333 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 2525 58 3 3 chr9 15897704 15898013 -126373431 - AluY SINE Alu -2 309 1 189 419 65 0 chr9 15898433 15898557 -126372887 + L2 LINE L2 2069 2200 -1114 302 329 80 58 chr9 15898980 15899117 -126372327 + L1M2 LINE L1 1045 1184 -5665 13792 202 40 24 chr9 15899117 15899832 -126371612 + L1MA4 LINE L1 818 1520 -5482 369 0 0 0 chr9 15899832 15899873 -126371571 + (TA)n Simple_repeat Simple_repeat 1 41 0 13792 202 40 24 chr9 15899873 15901697 -126369747 + L1MA4 LINE L1 1520 3313 -3689 216 0 0 0 chr9 15901697 15901721 -126369723 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2137 102 0 0 chr9 15901725 15902000 -126369444 - AluSx SINE Alu -37 275 1 13792 202 40 24 chr9 15902000 15903315 -126368129 + L1MA4 LINE L1 3315 4607 -2395 2335 93 0 3 chr9 15903315 15903617 -126367827 - AluSg SINE Alu -9 301 1 13792 202 40 24 chr9 15903617 15905745 -126365699 + L1MA4 LINE L1 4607 6991 -11 207 269 0 30 chr9 15905779 15905846 -126365598 + L2 LINE L2 2715 2779 -535 223 284 112 26 chr9 15905973 15906089 -126365355 + L2 LINE L2 2935 3060 -212 231 268 146 0 chr9 15906180 15906262 -126365182 + MIR SINE MIR 40 133 -75 419 292 211 10 chr9 15906285 15906494 -126364950 + MIR SINE MIR 3 253 -9 225 338 147 15 chr9 15906833 15906969 -126364475 + MIR SINE MIR 106 259 -3 189 333 144 0 chr9 15906946 15907036 -126364408 + L2 LINE L2 3202 3304 -9 * 26 0 0 0 chr9 15907156 15907182 -126364262 + AT_rich Low_complexity Low_complexity 1 26 0 840 232 121 0 chr9 15907422 15907646 -126363798 - MIR SINE MIR 0 262 12 488 288 204 0 chr9 15909063 15909254 -126362190 + MIR SINE MIR 31 260 -2 2593 53 0 0 chr9 15910240 15910542 -126360902 + AluSq SINE Alu 1 302 -11 213 121 0 0 chr9 15910750 15910783 -126360661 + (ATG)n Simple_repeat Simple_repeat 2 34 0 2924 281 116 22 chr9 15911313 15913242 -126358202 + L1MEc LINE L1 88 2198 -4198 1095 189 116 61 chr9 15913242 15913570 -126357874 + MLT1A1 LTR MaLR 3 348 -17 260 207 24 12 chr9 15913574 15913656 -126357788 + L1MEc LINE L1 2191 2273 -4123 342 282 48 27 chr9 15913667 15913855 -126357589 + Charlie1 DNA MER1_type 1465 1656 -1105 812 275 49 5 chr9 15913859 15914382 -126357062 - L1MEc LINE L1 -3764 2471 1948 23 33 0 0 chr9 15914390 15914420 -126357024 + AT_rich Low_complexity Low_complexity 1 30 0 2720 243 43 17 chr9 15914500 15915515 -126355929 + L1MEc LINE L1 2493 3534 -2681 2764 213 79 15 chr9 15916256 15917662 -126353782 + L1MB7 LINE L1 4630 6152 -32 2012 174 74 71 chr9 15917660 15918284 -126353160 + L1ME LINE L1 5204 5819 -347 * 6572 225 149 5 chr9 15918828 15920767 -126350677 + L1M2b LINE L1 1 2232 -4977 27 0 0 0 chr9 15920767 15920794 -126350650 + AT_rich Low_complexity Low_complexity 1 27 0 1671 158 0 40 chr9 15920797 15921100 -126350344 - AluJb SINE Alu -17 295 5 258 100 25 0 chr9 15921146 15921186 -126350258 + THE1A LTR MaLR 195 235 -120 4687 107 0 5 chr9 15921190 15921817 -126349627 + L1PA7 LINE L1 4 627 -5834 11201 94 6 1 chr9 15921818 15924201 -126347243 + L1PA7 LINE L1 4076 6469 0 2616 164 51 15 chr9 15924201 15924750 -126346694 + L1M2b LINE L1 2260 2828 -4381 897 175 6 35 chr9 15924818 15924989 -126346455 + FRAM SINE Alu 1 166 0 211 212 0 45 chr9 15925234 15925300 -126346144 + C-rich Low_complexity Low_complexity 3 65 0 23 0 0 0 chr9 15925501 15925524 -126345920 + AT_rich Low_complexity Low_complexity 1 23 0 311 343 73 56 chr9 15926341 15926519 -126344925 + MIR3 SINE MIR 13 193 -15 436 149 53 75 chr9 15928548 15928642 -126342802 + AluJb SINE Alu 198 289 -23 231 238 36 0 chr9 15928730 15928814 -126342630 + (TAG)n Simple_repeat Simple_repeat 3 89 0 1179 163 13 96 chr9 15929352 15929538 -126341906 - AluJo SINE Alu -11 301 150 2301 97 0 0 chr9 15929538 15929838 -126341606 - AluSx SINE Alu -12 300 1 1179 163 13 96 chr9 15929838 15929964 -126341480 - AluJo SINE Alu -162 150 15 290 247 65 21 chr9 15930146 15930239 -126341205 - MIR SINE MIR -70 192 96 1881 131 0 34 chr9 15930718 15931029 -126340415 - AluSx SINE Alu 0 301 1 997 212 0 0 chr9 15932178 15932367 -126339077 + MER5A DNA MER1_type 1 189 0 387 127 0 0 chr9 15933870 15933933 -126337511 + (CA)n Simple_repeat Simple_repeat 2 64 0 26 30 0 0 chr9 15933938 15933971 -126337473 + AT_rich Low_complexity Low_complexity 1 33 0 687 197 41 0 chr9 15934838 15934985 -126336459 + LTR65 LTR ERV1 18 170 -499 699 236 26 73 chr9 15936558 15936605 -126334839 - MER58A DNA MER1_type -2198 222 174 2139 104 14 0 chr9 15936605 15936908 -126334536 - AluSx SINE Alu 0 307 1 699 236 26 73 chr9 15936908 15937092 -126334352 - MER58A DNA MER1_type -2246 174 1 623 250 110 15 chr9 15937141 15937341 -126334103 + MIR SINE MIR 34 252 -10 323 342 125 47 chr9 15937577 15938390 -126333054 + L2 LINE L2 2332 3268 -4 381 248 13 129 chr9 15940633 15940751 -126330693 + L1MC4 LINE L1 7743 7873 -169 2235 90 0 17 chr9 15940751 15941050 -126330394 + AluSg SINE Alu 1 294 -16 381 248 13 129 chr9 15941050 15941233 -126330211 + L1MC4 LINE L1 7873 8009 -33 226 333 0 0 chr9 15941264 15941330 -126330114 + MER5B DNA MER1_type 50 115 -63 2501 236 39 55 chr9 15941471 15942266 -126329178 + L1M3e LINE L1 7 813 -6294 2067 132 0 0 chr9 15942266 15942555 -126328889 + AluSq SINE Alu 1 289 -24 2501 236 39 55 chr9 15942555 15943525 -126327919 + L1M3e LINE L1 813 2923 -4184 41762 34 22 21 chr9 15943625 15949520 -126321924 - L1PA2 LINE L1 -250 5905 1 213 154 0 0 chr9 15949955 15949994 -126321450 + A-rich Low_complexity Low_complexity 1 39 0 191 200 0 67 chr9 15950113 15950158 -126321286 - L2 LINE L2 -5 3267 3226 * 209 227 182 36 chr9 15950127 15950237 -126321207 - MIR SINE MIR -10 252 127 248 302 81 0 chr9 15951556 15951642 -126319802 + MIR SINE MIR 167 259 -3 237 271 0 14 chr9 15952058 15952128 -126319316 + (TA)n Simple_repeat Simple_repeat 1 69 0 2228 105 0 22 chr9 15953118 15953432 -126318012 - AluSx SINE Alu -5 307 1 24 32 0 0 chr9 15955113 15955144 -126316300 + AT_rich Low_complexity Low_complexity 1 31 0 342 0 0 0 chr9 15956187 15956225 -126315219 + (TG)n Simple_repeat Simple_repeat 2 39 0 258 132 0 0 chr9 15956335 15956388 -126315056 + (GA)n Simple_repeat Simple_repeat 2 54 0 28 0 0 0 chr9 15957966 15957994 -126313450 + AT_rich Low_complexity Low_complexity 1 28 0 249 167 0 33 chr9 15958323 15958383 -126313061 - L1ME3 LINE L1 -1 6161 6104 26 30 0 0 chr9 15958541 15958574 -126312870 + AT_rich Low_complexity Low_complexity 1 33 0 1306 178 9 33 chr9 15958975 15959091 -126312353 - L1 LINE L1 -840 5306 5189 1651 161 0 58 chr9 15959091 15959402 -126312042 - AluJo SINE Alu -19 293 1 1306 178 9 33 chr9 15959402 15959617 -126311827 - L1 LINE L1 -957 5189 4983 24 53 0 0 chr9 15962175 15962213 -126309231 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr9 15962926 15962949 -126308495 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 15964761 15964784 -126306660 + AT_rich Low_complexity Low_complexity 1 23 0 4367 163 52 30 chr9 15967506 15968647 -126302797 - L1MB1 LINE L1 0 6168 4991 1286 248 118 40 chr9 15968951 15969500 -126301944 + MLT1G1 LTR MaLR 4 595 0 564 270 28 24 chr9 15969739 15969950 -126301494 + L1ME LINE L1 5563 5774 -347 606 156 8 2 chr9 15969983 15970226 -126301218 + AluJ SINE Alu 5 292 -20 268 329 0 0 chr9 15970595 15970668 -126300776 - MLT1F LTR MaLR -469 73 1 634 149 75 8 chr9 15972015 15972149 -126299295 + L1MB8 LINE L1 5547 5689 -489 10555 182 26 19 chr9 15972152 15974187 -126297257 + L1M2 LINE L1 6 2054 -4795 1311 186 129 0 chr9 15974451 15974730 -126296714 + MER58B DNA MER1_type 11 325 -16 635 142 25 8 chr9 15975833 15975953 -126295491 + L1MB8 LINE L1 6045 6166 -12 22 70 0 0 chr9 15976439 15976482 -126294962 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 15977060 15977087 -126294357 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr9 15977248 15977284 -126294160 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 15977545 15977567 -126293877 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 15977827 15977856 -126293588 + AT_rich Low_complexity Low_complexity 1 29 0 476 194 73 16 chr9 15978796 15978920 -126292524 + L1ME3 LINE L1 5589 5719 -443 737 198 36 44 chr9 15978928 15979130 -126292314 + L1ME3 LINE L1 5957 6161 -9 298 283 12 30 chr9 15979483 15979629 -126291815 + MER5A DNA MER1_type 1 143 -35 570 356 47 47 chr9 15979711 15980051 -126291393 - L2 LINE L2 0 3272 2933 225 333 25 0 chr9 15980353 15980434 -126291010 - L2 LINE L2 -792 2522 2440 818 272 115 59 chr9 15982614 15983281 -126288163 + L1ME2 LINE L1 5448 6151 -13 317 282 65 51 chr9 15983313 15983529 -126287915 + L1MC4 LINE L1 7822 8040 -2 25 0 0 0 chr9 15983866 15983891 -126287553 + AT_rich Low_complexity Low_complexity 1 25 0 645 189 76 80 chr9 15985222 15985363 -126286081 + MER112 DNA MER1_type 18 159 -101 707 179 126 0 chr9 15985363 15985514 -126285930 - FAM SINE Alu -2 173 4 645 189 76 80 chr9 15985514 15985610 -126285834 + MER112 DNA MER1_type 159 254 -6 304 350 10 10 chr9 15985611 15985714 -126285730 - L2 LINE L2 -517 2797 2695 252 0 0 0 chr9 15985864 15985892 -126285552 + (TG)n Simple_repeat Simple_repeat 2 29 0 28410 50 2 4 chr9 15985947 15990348 -126281096 + L1PA7 LINE L1 1761 6154 0 218 292 62 0 chr9 15990584 15990649 -126280795 + L2 LINE L2 3203 3271 -1 205 226 172 43 chr9 15990944 15991037 -126280407 + MIR SINE MIR 151 255 -7 233 303 149 46 chr9 15991041 15991216 -126280228 - MER117 DNA MER1_type -1 196 4 1810 167 0 0 chr9 15991337 15991619 -126279825 - AluJb SINE Alu -30 282 1 320 204 144 15 chr9 15991989 15992121 -126279323 + L1ME4a LINE L1 5946 6094 -27 2277 26 7 4 chr9 15992706 15992978 -126278466 + AluY SINE Alu 39 311 0 1102 215 9 14 chr9 15993726 15993945 -126277499 + MER58A DNA MER1_type 7 224 0 356 268 229 16 chr9 15993963 15994146 -126277298 + MIR SINE MIR 31 252 -10 789 203 85 85 chr9 15994292 15994573 -126276871 - L1M4 LINE L1 -1133 5013 4733 14401 142 25 8 chr9 15994645 15994669 -126276775 + Tigger1 DNA MER2_type 26 48 -2370 291 28 0 0 chr9 15994669 15994705 -126276739 + (TG)n Simple_repeat Simple_repeat 2 37 0 14401 142 25 8 chr9 15994705 15996691 -126274753 + Tigger1 DNA MER2_type 48 2083 -335 2100 109 3 0 chr9 15996691 15996984 -126274460 - AluSc SINE Alu -6 303 10 14401 142 25 8 chr9 15996984 15997326 -126274118 + Tigger1 DNA MER2_type 2083 2418 0 24 53 0 0 chr9 15997927 15997965 -126273479 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr9 16000101 16000137 -126271307 + AT_rich Low_complexity Low_complexity 1 36 0 242 203 81 27 chr9 16000780 16000854 -126270590 + L2 LINE L2 3149 3226 -87 515 301 78 38 chr9 16001135 16001689 -126269755 - L1M4 LINE L1 -4848 1694 1219 391 228 51 0 chr9 16002447 16002526 -126268918 + MER91C DNA MER1_type 34 116 -24 342 302 39 8 chr9 16004671 16004795 -126266649 - MIR SINE MIR -65 143 37 29 0 0 0 chr9 16004890 16004919 -126266525 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 16005038 16005060 -126266384 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr9 16006926 16006957 -126264487 + AT_rich Low_complexity Low_complexity 1 31 0 1110 178 33 24 chr9 16007020 16007233 -126264211 + MER20 DNA MER1_type 1 215 -4 26 74 0 0 chr9 16007370 16007424 -126264020 + AT_rich Low_complexity Low_complexity 1 54 0 2081 286 202 17 chr9 16007437 16008499 -126262945 - L2 LINE L2 0 3313 2043 857 295 61 14 chr9 16008504 16008863 -126262581 - L2 LINE L2 -2225 1089 714 1302 263 143 18 chr9 16009226 16009660 -126261784 - L2 LINE L2 0 3313 2826 1460 273 89 30 chr9 16009930 16011010 -126260434 - L1ME3A LINE L1 -284 5886 4735 742 188 35 14 chr9 16011092 16011236 -126260208 - MER106B DNA MER1_type -912 147 1 249 224 0 0 chr9 16011357 16011415 -126260029 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 1585 269 157 51 chr9 16011461 16012809 -126258635 + L1M4 LINE L1 3787 5277 -869 1972 101 7 37 chr9 16012954 16013252 -126258192 - AluSx SINE Alu -23 289 1 2004 158 15 40 chr9 16013367 16013767 -126257677 - MLT1B LTR MaLR 0 390 1 210 384 80 8 chr9 16015532 16015657 -126255787 + L2 LINE L2 3138 3271 -1 240 111 0 0 chr9 16015864 16015900 -126255544 + (T)n Simple_repeat Simple_repeat 1 36 0 5914 154 40 17 chr9 16016559 16018597 -126252847 - L1MA4A LINE L1 -5 6298 4222 233 246 0 0 chr9 16018613 16018674 -126252770 - L1MA4A LINE L1 -2132 4014 3954 245 293 67 0 chr9 16018830 16018905 -126252539 - Tigger5 DNA MER2_type -7 2316 2237 436 230 11 0 chr9 16018916 16019003 -126252441 + Tigger5 DNA MER2_type 1 88 -2235 302 218 0 0 chr9 16019061 16019116 -126252328 - Tigger5 DNA MER2_type -2267 56 2 9812 204 24 53 chr9 16019117 16021346 -126250098 + L1MA8 LINE L1 3093 4891 -2674 3900 92 29 2 chr9 16021346 16021897 -126249547 + L1PA10 LINE L1 5589 6160 -8 9812 204 24 53 chr9 16021897 16023682 -126247762 + L1MA8 LINE L1 4891 6727 -838 1392 211 11 8 chr9 16023683 16023944 -126247500 + Tigger7 DNA MER2_type 2 263 -470 516 198 0 10 chr9 16023949 16024045 -126247399 + Tigger7 DNA MER2_type 2397 2491 0 4641 166 45 18 chr9 16024045 16025001 -126246443 + L1MA8 LINE L1 6726 7707 -3 286 247 101 107 chr9 16025263 16025441 -126246003 - MER5B DNA MER1_type 0 178 2 191 337 133 0 chr9 16025485 16025583 -126245861 + L2 LINE L2 3162 3272 0 207 277 0 0 chr9 16026535 16026582 -126244862 + MIR3 SINE MIR 139 185 -23 2058 122 27 3 chr9 16026772 16027068 -126244376 + AluSx SINE Alu 1 303 -9 189 147 0 0 chr9 16027250 16027284 -126244160 + (TATG)n Simple_repeat Simple_repeat 3 36 0 2069 124 0 0 chr9 16027451 16027759 -126243685 + AluSx SINE Alu 1 308 0 776 271 58 19 chr9 16027917 16028175 -126243269 + MLT1L LTR MaLR 343 610 -5 224 238 12 0 chr9 16028262 16028346 -126243098 + (TA)n Simple_repeat Simple_repeat 1 85 0 496 307 193 5 chr9 16028367 16028585 -126242859 + MIR SINE MIR 1 259 -3 337 325 116 47 chr9 16028597 16028917 -126242527 - L2 LINE L2 -1 3312 2971 305 318 8 76 chr9 16028952 16029084 -126242360 + L2 LINE L2 3150 3272 0 313 304 20 10 chr9 16029242 16029344 -126242100 + L2 LINE L2 3178 3280 -33 541 266 52 31 chr9 16029667 16029716 -126241728 + L2 LINE L2 3113 3159 -154 189 74 0 0 chr9 16029716 16029743 -126241701 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 541 266 52 31 chr9 16029743 16029885 -126241559 + L2 LINE L2 3159 3308 -5 242 242 137 32 chr9 16030258 16030353 -126241091 - MIR SINE MIR -45 217 113 460 276 66 7 chr9 16030598 16030750 -126240694 + MIR SINE MIR 86 246 -16 262 129 32 16 chr9 16030788 16030850 -126240594 - MER116 DNA Mariner 0 80 18 26 30 0 0 chr9 16031365 16031398 -126240046 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 16031450 16031471 -126239973 + AT_rich Low_complexity Low_complexity 1 21 0 771 121 0 0 chr9 16032302 16032442 -126239002 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 425 340 35 0 chr9 16032544 16032688 -126238756 - MIR3 SINE MIR -10 198 50 223 222 0 0 chr9 16033523 16033568 -126237876 + L2 LINE L2 3261 3305 -8 423 0 0 0 chr9 16035937 16035984 -126235460 + (CA)n Simple_repeat Simple_repeat 1 47 0 1401 186 57 18 chr9 16037057 16037337 -126234107 - AluJo SINE Alu -15 297 7 222 355 11 32 chr9 16037674 16037767 -126233677 - L2 LINE L2 -36 3236 3146 186 164 194 15 chr9 16039382 16039449 -126231995 - L2 LINE L2 0 3272 3194 2246 129 0 0 chr9 16039540 16039851 -126231593 + AluSx SINE Alu 1 311 -1 205 292 163 34 chr9 16040965 16041174 -126230270 + L2 LINE L2 688 923 -2391 * 265 251 133 59 chr9 16041147 16041240 -126230204 + L2 LINE L2 3096 3181 -132 2474 63 0 3 chr9 16041240 16041541 -126229903 - AluY SINE Alu -11 300 1 265 251 133 59 chr9 16041541 16041650 -126229794 + L2 LINE L2 3181 3313 0 410 331 64 67 chr9 16041951 16042045 -126229399 + L2 LINE L2 1023 1116 -2198 2037 130 0 0 chr9 16042045 16042346 -126229098 + AluSx SINE Alu 3 303 -9 410 331 64 67 chr9 16042346 16042686 -126228758 + L2 LINE L2 1116 1456 -1858 2229 218 21 43 chr9 16045029 16045372 -126226072 - L1M4 LINE L1 -3339 2807 2481 2059 109 11 3 chr9 16045372 16045691 -126225753 + AluSq SINE Alu 1 321 0 2229 218 21 43 chr9 16045691 16045965 -126225479 - L1M4 LINE L1 -3665 2481 2202 21 0 0 0 chr9 16046534 16046555 -126224889 + AT_rich Low_complexity Low_complexity 1 21 0 1463 169 45 22 chr9 16046564 16046878 -126224566 - L1MB7 LINE L1 -7 6177 5857 192 304 0 51 chr9 16047045 16047124 -126224320 + MIR3 SINE MIR 126 200 -8 272 340 0 32 chr9 16047478 16047572 -126223872 + L2 LINE L2 3220 3310 -3 21 0 0 0 chr9 16050121 16050142 -126221302 + AT_rich Low_complexity Low_complexity 1 21 0 901 179 92 20 chr9 16050839 16051034 -126220410 + MIR SINE MIR 54 262 0 2321 106 0 0 chr9 16051800 16052102 -126219342 + AluSx SINE Alu 1 302 -10 1772 183 0 0 chr9 16052191 16052476 -126218968 - AluJb SINE Alu -27 285 1 573 140 22 0 chr9 16052522 16052658 -126218786 + (TA)n Simple_repeat Simple_repeat 1 139 0 497 253 75 6 chr9 16052879 16053053 -126218391 - L1ME LINE L1 -319 5802 5617 21 0 0 0 chr9 16053910 16053931 -126217513 + AT_rich Low_complexity Low_complexity 1 21 0 320 111 69 42 chr9 16054098 16054170 -126217274 + L1MA7 LINE L1 6218 6291 0 25 0 0 0 chr9 16054170 16054195 -126217249 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 16054317 16054340 -126217104 + AT_rich Low_complexity Low_complexity 1 23 0 217 322 119 28 chr9 16055992 16056135 -126215309 + MIR SINE MIR 57 212 -50 25 31 0 0 chr9 16057120 16057152 -126214292 + AT_rich Low_complexity Low_complexity 1 32 0 2285 243 60 39 chr9 16057316 16057974 -126213470 - L1ME2 LINE L1 -6 6158 5477 2510 104 16 8 chr9 16057974 16058359 -126213085 + L1PA13 LINE L1 5776 6163 0 2285 243 60 39 chr9 16058359 16058700 -126212744 - L1ME2 LINE L1 -687 5477 5144 287 39 481 0 chr9 16059182 16059234 -126212210 + MADE1 DNA Mariner 1 77 -3 283 172 62 31 chr9 16059283 16059347 -126212097 + L2 LINE L2 3247 3312 -1 27 0 0 0 chr9 16060664 16060691 -126210753 + AT_rich Low_complexity Low_complexity 1 27 0 1670 160 0 38 chr9 16064439 16064732 -126206712 + AluJb SINE Alu 1 282 -30 265 306 27 48 chr9 16065132 16065279 -126206165 - L2 LINE L2 -15 3298 3155 239 0 32 0 chr9 16065922 16065953 -126205491 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 955 171 51 0 chr9 16067549 16067724 -126203720 + MLT1C LTR MaLR 1 184 -283 1013 114 0 0 chr9 16067724 16067855 -126203589 + AluSg SINE Alu 1 131 -179 2006 114 19 19 chr9 16067956 16068271 -126203173 + THE1C LTR MaLR 61 375 0 446 200 27 0 chr9 16069433 16069543 -126201901 + L1M4 LINE L1 4642 4754 -1392 1140 193 40 40 chr9 16069718 16069967 -126201477 + AluJo SINE Alu 20 268 -44 1137 163 0 0 chr9 16070055 16070221 -126201223 - AluSg/x SINE Alu -22 290 125 349 283 36 13 chr9 16070463 16070607 -126200837 - MIR SINE MIR -62 146 2 603 317 72 73 chr9 16071381 16071987 -126199457 - L2 LINE L2 0 3272 2613 192 323 54 39 chr9 16073571 16073701 -126197743 - L2 LINE L2 -3 3310 3179 246 238 73 46 chr9 16074855 16075006 -126196438 - L1ME4a LINE L1 -3 6118 5964 767 144 8 0 chr9 16075143 16075261 -126196183 + AluJb SINE Alu 163 281 -31 278 229 14 0 chr9 16075742 16075812 -126195632 - MER116 DNA Mariner -2 78 8 320 0 25 0 chr9 16075812 16075852 -126195592 + (CATA)n Simple_repeat Simple_repeat 3 43 0 239 309 74 0 chr9 16075973 16076054 -126195390 + L2 LINE L2 3223 3309 -4 2280 139 8 16 chr9 16076390 16076757 -126194687 - THE1B LTR MaLR 0 364 1 276 53 0 0 chr9 16078033 16078071 -126193373 + (TG)n Simple_repeat Simple_repeat 2 39 0 2065 131 7 3 chr9 16079180 16079478 -126191966 + AluSq SINE Alu 3 301 -12 207 93 0 70 chr9 16079886 16079929 -126191515 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr9 16080535 16080556 -126190888 + AT_rich Low_complexity Low_complexity 1 21 0 2528 50 0 0 chr9 16081127 16081429 -126190015 - AluY SINE Alu -9 302 1 1626 152 7 40 chr9 16082064 16082341 -126189103 + AluJb SINE Alu 1 268 -44 420 174 49 21 chr9 16082350 16082494 -126188950 + GA-rich Low_complexity Low_complexity 4 151 0 515 198 25 20 chr9 16082519 16082766 -126188678 + GA-rich Low_complexity Low_complexity 1 248 0 2115 117 18 47 chr9 16084138 16084435 -126187009 + L1MA8 LINE L1 5919 6204 -87 2112 117 9 25 chr9 16084435 16084752 -126186692 + AluSx SINE Alu 1 312 0 2115 117 18 47 chr9 16084752 16084838 -126186606 + L1MA8 LINE L1 6204 6291 0 2157 43 0 0 chr9 16085676 16085934 -126185510 + L1PA3 LINE L1 5898 6155 0 928 207 18 50 chr9 16086418 16086640 -126184804 - AluJb SINE Alu -3 309 95 858 125 0 0 chr9 16086746 16086866 -126184578 + AluSg/x SINE Alu 176 295 -17 948 218 76 8 chr9 16086883 16087145 -126184299 + MLT1C LTR MaLR 188 467 0 219 330 177 23 chr9 16087583 16087798 -126183646 + L2 LINE L2 2977 3224 -48 2114 114 3 0 chr9 16089193 16089490 -126181954 + AluSx SINE Alu 1 298 -14 2179 108 0 0 chr9 16091147 16091434 -126180010 + AluSq SINE Alu 1 287 -26 335 212 0 59 chr9 16091988 16092073 -126179371 - MIR SINE MIR -65 197 118 2750 183 27 24 chr9 16093464 16094012 -126177432 + MER44D DNA MER2_type 1 605 0 215 303 0 30 chr9 16094102 16094201 -126177243 + GA-rich Low_complexity Low_complexity 1 96 0 776 235 16 0 chr9 16095102 16095285 -126176159 - MER20 DNA MER1_type -28 191 6 655 116 0 0 chr9 16095337 16095432 -126176012 + AluSg/x SINE Alu 206 300 -12 360 297 72 9 chr9 16095729 16095840 -126175604 + L2 LINE L2 3196 3313 0 2097 113 43 60 chr9 16095882 16096252 -126175192 + THE1B LTR MaLR 1 364 0 585 278 11 0 chr9 16096496 16096672 -126174772 + MER20 DNA MER1_type 40 217 -2 207 211 0 0 chr9 16096820 16096858 -126174586 + MIR SINE MIR 92 129 -133 392 266 162 26 chr9 16097292 16097446 -126173998 + MIR SINE MIR 82 256 -6 261 241 46 35 chr9 16098085 16098172 -126173272 + MIR SINE MIR 162 249 -13 216 290 226 16 chr9 16098988 16099112 -126172332 - MIR SINE MIR -108 154 5 421 186 39 20 chr9 16099370 16099472 -126171972 + MIR SINE MIR 90 193 -69 22 35 0 0 chr9 16100176 16100205 -126171239 + AT_rich Low_complexity Low_complexity 1 29 0 344 198 33 44 chr9 16100430 16100521 -126170923 + L2 LINE L2 3224 3313 0 238 49 24 24 chr9 16100860 16100901 -126170543 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 189 229 62 0 chr9 16102868 16102916 -126168528 + L2 LINE L2 3187 3237 -35 441 281 41 34 chr9 16102947 16103093 -126168351 + L2 LINE L2 3163 3309 -4 255 233 27 67 chr9 16103700 16103850 -126167594 + L1MC4a LINE L1 5787 5930 -1878 374 231 81 131 chr9 16103993 16104413 -126167031 + L1ME4a LINE L1 5442 5919 -202 1224 205 11 32 chr9 16105956 16106234 -126165210 + MLT2D LTR ERVL 86 357 -57 468 0 0 0 chr9 16106234 16106286 -126165158 + (TC)n Simple_repeat Simple_repeat 1 52 0 323 264 145 14 chr9 16106509 16106686 -126164758 + MIR SINE MIR 2 209 -53 427 333 103 10 chr9 16106798 16106993 -126164451 - MIR SINE MIR -30 232 20 2158 127 0 7 chr9 16107146 16107454 -126163990 + AluSx SINE Alu 1 306 -6 316 255 28 28 chr9 16108474 16108580 -126162864 + MIR3 SINE MIR 85 190 -18 185 319 97 14 chr9 16108710 16108782 -126162662 - MIR3 SINE MIR -116 92 15 24 67 0 0 chr9 16109318 16109363 -126162081 + AT_rich Low_complexity Low_complexity 1 45 0 30 27 0 0 chr9 16110013 16110050 -126161394 + AT_rich Low_complexity Low_complexity 1 37 0 1951 148 10 0 chr9 16110056 16110353 -126161091 + AluJb SINE Alu 6 305 -7 798 63 16 24 chr9 16110355 16110482 -126160962 + (GGGAA)n Simple_repeat Simple_repeat 2 127 0 685 203 8 0 chr9 16110484 16110612 -126160832 + FLAM_C SINE Alu 2 130 -3 268 370 56 0 chr9 16112809 16112917 -126158527 + MIR SINE MIR 32 145 -63 359 172 126 13 chr9 16113103 16113254 -126158190 + MER113 DNA MER1_type? 4 171 -350 191 61 30 0 chr9 16113323 16113356 -126158088 + (CA)n Simple_repeat Simple_repeat 2 35 0 2252 92 3 3 chr9 16113432 16113726 -126157718 - AluSq SINE Alu -19 294 1 315 341 30 15 chr9 16113801 16113933 -126157511 + MER5B DNA MER1_type 15 148 -30 361 236 38 47 chr9 16113807 16113913 -126157531 - MER5A DNA MER1_type -22 167 63 729 255 86 29 chr9 16114449 16114692 -126156752 - MIR SINE MIR 0 262 6 364 216 0 0 chr9 16115967 16116055 -126155389 - L1MA9 LINE L1 -38 6274 6187 996 300 58 17 chr9 16116531 16117051 -126154393 + L1ME3A LINE L1 5327 5867 -303 2660 145 50 2 chr9 16117217 16117679 -126153765 + L1MB2 LINE L1 5681 6164 -7 556 342 5 5 chr9 16117854 16118038 -126153406 - MIR SINE MIR -78 184 1 1186 166 43 9 chr9 16118236 16118447 -126152997 + MER20 DNA MER1_type 1 218 -1 261 0 0 0 chr9 16119005 16119034 -126152410 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 380 292 87 10 chr9 16119170 16119365 -126152079 + MLT1J1 LTR MaLR 1 210 -236 21 0 0 0 chr9 16119726 16119747 -126151697 + AT_rich Low_complexity Low_complexity 1 21 0 181 242 33 110 chr9 16119856 16119947 -126151497 - L2 LINE L2 -3 3269 3186 34 42 0 0 chr9 16120216 16120264 -126151180 + AT_rich Low_complexity Low_complexity 1 48 0 214 309 0 0 chr9 16120544 16120599 -126150845 + GA-rich Low_complexity Low_complexity 2 56 0 1762 116 0 45 chr9 16123564 16123860 -126147584 - AluSg SINE Alu 0 310 27 423 38 0 0 chr9 16123995 16124048 -126147396 + (CA)n Simple_repeat Simple_repeat 2 54 0 219 241 69 78 chr9 16124933 16125049 -126146395 - MIR SINE MIR -56 206 92 311 272 139 35 chr9 16125950 16126152 -126145292 - LTR16C LTR ERVL -89 402 180 2371 100 3 0 chr9 16126461 16126771 -126144673 + AluY SINE Alu 1 311 0 801 251 86 25 chr9 16126901 16127144 -126144300 - MIR SINE MIR 0 262 5 505 248 202 14 chr9 16127384 16127602 -126143842 + MIR SINE MIR 2 260 -2 1980 121 0 0 chr9 16128106 16128371 -126143073 - AluSx SINE Alu -44 268 4 22 70 0 0 chr9 16128590 16128633 -126142811 + AT_rich Low_complexity Low_complexity 1 43 0 1070 176 87 23 chr9 16128846 16129175 -126142269 + MSTD LTR MaLR 1 396 0 211 226 68 75 chr9 16129275 16129408 -126142036 + MIR SINE MIR 118 249 -13 24 0 0 0 chr9 16130077 16130101 -126141343 + AT_rich Low_complexity Low_complexity 1 24 0 377 257 79 46 chr9 16130413 16130565 -126140879 + MIR SINE MIR 33 189 -73 507 200 43 21 chr9 16132572 16132712 -126138732 - MER103 DNA DNA -1 165 23 21 0 0 0 chr9 16133409 16133430 -126138014 + AT_rich Low_complexity Low_complexity 1 21 0 331 286 198 16 chr9 16134126 16134318 -126137126 - Charlie8 DNA MER1_type -1016 1401 77 2205 134 26 0 chr9 16134348 16134698 -126136746 + THE1B LTR MaLR 6 364 0 252 91 23 0 chr9 16135900 16135944 -126135500 + MADE1 DNA Mariner 36 80 0 589 158 22 125 chr9 16135945 16136129 -126135315 + MLT1C LTR MaLR 303 467 0 24 32 0 0 chr9 16137597 16137628 -126133816 + AT_rich Low_complexity Low_complexity 1 31 0 2166 133 0 0 chr9 16137632 16137933 -126133511 + AluSq SINE Alu 1 301 -12 303 169 34 0 chr9 16137937 16137996 -126133448 + L1MC4 LINE L1 6640 6700 -1342 2057 113 20 0 chr9 16138523 16138816 -126132628 - AluSx SINE Alu -13 299 1 1145 208 17 123 chr9 16139026 16139434 -126132010 + MLT1A1 LTR MaLR 1 365 0 7189 199 67 24 chr9 16139447 16141072 -126130372 + MLT1A1-int LTR MaLR 36 1730 -5 194 352 19 0 chr9 16141225 16141279 -126130165 + L2 LINE L2 3121 3175 -97 598 244 117 17 chr9 16141320 16141500 -126129944 + MIR SINE MIR 52 249 -13 206 333 0 48 chr9 16141506 16141590 -126129854 + L2 LINE L2 3193 3272 0 1591 173 130 8 chr9 16141839 16142192 -126129252 + MSTD LTR MaLR 1 396 0 1281 113 0 0 chr9 16143043 16143237 -126128207 + LTR9B LTR ERV1 451 644 0 1936 218 31 48 chr9 16143238 16143753 -126127691 + HUERS-P3b LTR ERV1 2 507 -6911 3885 127 3 10 chr9 16143783 16144435 -126127009 + HUERS-P3b LTR ERV1 764 1483 -5935 185 227 107 0 chr9 16144435 16144510 -126126934 - MER5C DNA MER1_type -241 83 1 6036 111 31 10 chr9 16144510 16145510 -126125934 + HUERS-P3b LTR ERV1 1559 2642 -4776 2263 182 33 2 chr9 16145510 16145938 -126125506 - LTR8 LTR ERV1 -250 441 1 5662 86 1 20 chr9 16145938 16146755 -126124689 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 15313 107 28 9 chr9 16146748 16149303 -126122141 + HUERS-P3b LTR ERV1 2123 7411 -7 3272 94 32 43 chr9 16149304 16149868 -126121576 + LTR9B LTR ERV1 1 558 -86 318 50 0 0 chr9 16149868 16149908 -126121536 + (CA)n Simple_repeat Simple_repeat 1 40 0 465 314 57 31 chr9 16150311 16150505 -126120939 - MIR SINE MIR -13 249 51 231 36 0 0 chr9 16150914 16150942 -126120502 + (CA)n Simple_repeat Simple_repeat 1 28 0 212 358 75 33 chr9 16151107 16151227 -126120217 - L2 LINE L2 -10 3262 3138 269 320 205 24 chr9 16151539 16151876 -126119568 - L2 LINE L2 -676 2638 2241 2503 96 5 40 chr9 16152749 16153124 -126118320 - THE1B LTR MaLR -2 362 1 645 274 155 9 chr9 16153350 16153569 -126117875 - MIR SINE MIR 0 262 12 348 320 8 23 chr9 16154501 16154629 -126116815 + MIR SINE MIR 53 178 -84 295 330 104 0 chr9 16155229 16155344 -126116100 + MIR SINE MIR 28 154 -108 1612 191 35 140 chr9 16155345 16155911 -126115533 + MLT2B3 LTR ERVL 1 507 -47 309 109 0 0 chr9 16155912 16155958 -126115486 + (TAGG)n Simple_repeat Simple_repeat 1 46 0 249 232 0 0 chr9 16155963 16156019 -126115425 + MLT2B3 LTR ERVL 465 520 0 189 139 28 0 chr9 16156061 16156097 -126115347 + MIR SINE MIR 226 262 0 612 205 26 53 chr9 16156123 16156274 -126115170 + MER5A DNA MER1_type 1 147 -42 856 277 36 5 chr9 16156301 16156525 -126114919 + MIR SINE MIR 20 250 -12 2326 90 3 0 chr9 16156650 16156949 -126114495 - AluSx SINE Alu -12 300 1 2414 107 0 0 chr9 16157720 16158029 -126113415 - AluSx SINE Alu -3 309 1 2957 63 0 2 chr9 16158546 16158945 -126112499 + L1PA8 LINE L1 5755 6152 -20 201 162 0 0 chr9 16159090 16159127 -126112317 + T-rich Low_complexity Low_complexity 5 41 0 443 143 0 12 chr9 16159809 16159893 -126111551 + (GGGA)n Simple_repeat Simple_repeat 3 85 0 187 268 18 0 chr9 16160329 16160385 -126111059 + L3b LINE CR1 1256 1312 -271 198 277 0 0 chr9 16160960 16161007 -126110437 + MIR SINE MIR 103 149 -113 904 195 32 45 chr9 16161536 16161757 -126109687 + MER20 DNA MER1_type 2 219 0 488 335 58 11 chr9 16162574 16162765 -126108679 + L3b LINE CR1 1249 1448 -135 795 104 0 0 chr9 16162853 16162959 -126108485 + U6 snRNA snRNA 1 106 -1 1424 70 11 0 chr9 16162960 16163146 -126108298 + L1PA10 LINE L1 5964 6151 -17 504 295 46 43 chr9 16163247 16163576 -126107868 + MER102b DNA MER1_type 4 333 -8 637 265 24 12 chr9 16164137 16164307 -126107137 - MER5B DNA MER1_type 0 178 7 427 285 65 25 chr9 16164309 16164509 -126106935 + MIR SINE MIR 22 229 -33 1719 166 17 27 chr9 16164835 16165131 -126106313 + AluJo SINE Alu 6 298 -14 306 279 111 17 chr9 16166699 16166871 -126104573 + L1MEc LINE L1 2216 2403 -3993 575 326 46 58 chr9 16167237 16167445 -126103999 - L1M4 LINE L1 -930 5216 5007 1914 140 0 34 chr9 16167445 16167764 -126103680 - AluSx SINE Alu 0 309 1 575 326 46 58 chr9 16167764 16168035 -126103409 - L1M4 LINE L1 -1139 5007 4742 290 275 8 0 chr9 16168103 16168223 -126103221 - L1M4 LINE L1 -1438 4708 4588 904 264 67 68 chr9 16168532 16169292 -126102152 - HAL1 LINE L1 -758 1749 991 516 167 0 0 chr9 16169345 16169435 -126102009 - U6 snRNA snRNA 0 107 18 198 71 0 0 chr9 16169748 16169776 -126101668 + (A)n Simple_repeat Simple_repeat 1 28 0 5105 172 38 22 chr9 16169784 16170145 -126101299 + L1MA10 LINE L1 5116 5470 -864 2347 112 79 2 chr9 16170145 16170564 -126100880 - MLT2A2 LTR ERVL -2 451 1 5105 172 38 22 chr9 16170564 16171245 -126100199 + L1MA10 LINE L1 5470 6183 -151 180 111 0 0 chr9 16171245 16171272 -126100172 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5105 172 38 22 chr9 16171272 16171427 -126100017 + L1MA10 LINE L1 6183 6334 0 1291 179 4 30 chr9 16172298 16172532 -126098912 - AluJo SINE Alu -84 228 1 216 292 99 109 chr9 16173078 16173270 -126098174 - L2 LINE L2 -493 2821 2632 295 350 43 21 chr9 16173556 16173742 -126097702 + L2 LINE L2 1840 2029 -1285 182 340 125 43 chr9 16173754 16174145 -126097299 + L2 LINE L2 2553 2975 -339 895 223 27 0 chr9 16174621 16174805 -126096639 - MER7C DNA MER2_type -413 189 1 304 285 252 33 chr9 16175922 16176164 -126095280 + HAL1 LINE L1 826 1120 -1387 646 184 39 67 chr9 16176303 16176451 -126094993 - MER21B LTR ERV1 -1 862 718 1910 141 20 23 chr9 16176451 16176750 -126094694 - AluSx SINE Alu -14 298 1 646 184 39 67 chr9 16176750 16176780 -126094664 - MER21B LTR ERV1 -145 718 689 534 270 60 75 chr9 16176981 16177233 -126094211 - MER102a DNA MER1_type -15 315 68 2139 127 7 0 chr9 16177248 16177556 -126093888 + AluSx SINE Alu 1 310 -2 2294 94 3 0 chr9 16178327 16178625 -126092819 + AluSx SINE Alu 1 299 -13 856 277 36 5 chr9 16178750 16178974 -126092470 - MIR SINE MIR -12 250 20 625 211 20 53 chr9 16179001 16179153 -126092291 - MER5A DNA MER1_type -42 147 1 2365 116 3 0 chr9 16179760 16180071 -126091373 - AluSx SINE Alu 0 312 1 5302 58 0 31 chr9 16180673 16181380 -126090064 - L1PA7 LINE L1 0 6154 5470 235 256 110 0 chr9 16182432 16182514 -126088930 - MIR SINE MIR -61 201 111 2148 142 0 0 chr9 16184936 16185238 -126086206 + AluSx SINE Alu 1 302 -10 342 0 0 0 chr9 16186396 16186434 -126085010 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 74 0 0 chr9 16188061 16188088 -126083356 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr9 16188707 16188736 -126082708 + AT_rich Low_complexity Low_complexity 1 29 0 2295 101 0 0 chr9 16188738 16189036 -126082408 - AluY SINE Alu -13 298 1 2286 176 79 4 chr9 16189062 16189555 -126081889 + L1MB7 LINE L1 5597 6126 -58 632 328 87 52 chr9 16189660 16190354 -126081090 + L1M4 LINE L1 4446 5159 -987 652 216 196 5 chr9 16190897 16191101 -126080343 - MIR SINE MIR -9 253 11 2218 59 0 11 chr9 16191379 16191650 -126079794 + AluY SINE Alu 35 302 -9 803 165 0 0 chr9 16193172 16193293 -126078151 - FLAM_C SINE Alu -22 121 1 416 269 130 43 chr9 16193615 16193823 -126077621 - MIR SINE MIR 0 262 37 16303 73 2 6 chr9 16193937 16196301 -126075143 - L1P LINE L1 -2118 4028 1675 1274 268 95 3 chr9 16196522 16196902 -126074542 + L2 LINE L2 2025 2439 -875 1139 250 63 16 chr9 16196952 16197432 -126074012 + MLT1E LTR MaLR 1 593 0 1514 272 49 43 chr9 16197432 16198082 -126073362 + L2 LINE L2 2520 3194 -119 552 86 0 12 chr9 16198082 16198163 -126073281 + MADE1 DNA Mariner 1 80 0 1514 272 49 43 chr9 16198163 16198284 -126073160 + L2 LINE L2 3194 3313 0 2153 129 0 3 chr9 16198379 16198682 -126072762 + AluSq SINE Alu 1 302 -11 338 285 72 12 chr9 16198983 16199235 -126072209 + L1ME LINE L1 5635 5818 -303 1388 162 139 35 chr9 16199431 16199770 -126071674 + MLT1A2 LTR MaLR 1 374 0 2315 110 7 0 chr9 16199827 16200136 -126071308 + AluSx SINE Alu 1 311 -1 965 261 76 58 chr9 16201165 16201651 -126069793 + MLT1J LTR MaLR 3 497 -14 2137 115 23 10 chr9 16201957 16202262 -126069182 - AluSx SINE Alu -3 309 1 929 98 0 0 chr9 16202311 16202434 -126069010 + AluSg/x SINE Alu 174 296 -14 2173 98 0 0 chr9 16203478 16203764 -126067680 + AluSx SINE Alu 27 312 0 2265 41 0 0 chr9 16204421 16204689 -126066755 - AluY SINE Alu -3 308 41 256 83 21 0 chr9 16204879 16204927 -126066517 - L1MA8 LINE L1 -5 6286 6238 1688 162 3 14 chr9 16204927 16205217 -126066227 - AluJo SINE Alu -15 297 11 1530 133 48 3 chr9 16205269 16205562 -126065882 - L1MA8 LINE L1 -49 6242 5937 2468 84 0 3 chr9 16205611 16205920 -126065524 + AluSc SINE Alu 2 309 0 1445 157 59 59 chr9 16206122 16206428 -126065016 + AluJb SINE Alu 4 309 -3 205 349 47 0 chr9 16207219 16207325 -126064119 - MIR SINE MIR -23 239 129 1892 127 0 0 chr9 16207350 16207603 -126063841 - AluSq SINE Alu -60 253 1 759 290 67 8 chr9 16207605 16207843 -126063601 - MIR SINE MIR -6 256 5 393 315 109 18 chr9 16208463 16208793 -126062651 - L1ME4a LINE L1 -228 5893 5534 706 264 34 52 chr9 16209221 16209726 -126061718 - MER34 LTR ERV1 -3 640 5 327 246 35 9 chr9 16209897 16210011 -126061433 - MER103 DNA DNA -4 162 46 180 0 0 0 chr9 16210059 16210079 -126061365 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 320 293 43 64 chr9 16210783 16210951 -126060493 - L2 LINE L2 -1 3312 3147 634 227 0 0 chr9 16210951 16211083 -126060361 + FLAM_A SINE Alu 1 132 -1 320 293 43 64 chr9 16211083 16211102 -126060342 - L2 LINE L2 -166 3147 3129 715 21 0 0 chr9 16211465 16211560 -126059884 + MER41A LTR ERV1 402 496 -58 363 94 0 2 chr9 16211600 16211655 -126059789 + MER41A LTR ERV1 501 554 0 267 154 320 13 chr9 16211655 16211733 -126059711 + MER41A-int LTR ERV1 1 102 -5844 4955 120 49 5 chr9 16211745 16212547 -126058897 + MER41A-int LTR ERV1 4 840 -5106 2574 138 45 31 chr9 16212547 16212667 -126058777 + MER41A-int LTR ERV1 1567 1684 -6132 204 40 0 0 chr9 16212667 16212692 -126058752 + (TC)n Simple_repeat Simple_repeat 2 26 0 2574 138 45 31 chr9 16212692 16213192 -126058252 + MER41A-int LTR ERV1 1684 3757 -4059 * 12892 87 19 6 chr9 16213181 16215434 -126056010 + MER41A-int LTR ERV1 2856 5944 -2 3247 82 2 25 chr9 16215434 16215769 -126055675 + MER41A LTR ERV1 1 323 -231 2361 95 0 3 chr9 16215769 16216074 -126055370 + AluSg SINE Alu 1 304 -6 3247 82 2 25 chr9 16216074 16216215 -126055229 + MER41A LTR ERV1 323 466 -88 415 211 232 7 chr9 16216662 16216804 -126054640 - MIR SINE MIR 0 262 89 296 233 0 0 chr9 16216906 16216966 -126054478 - MIR SINE MIR -73 135 76 1795 172 0 16 chr9 16217096 16217399 -126054045 - AluJo SINE Alu -14 298 1 349 284 41 47 chr9 16217674 16217843 -126053601 + MIR SINE MIR 89 256 -6 21 36 0 0 chr9 16217879 16217907 -126053537 + AT_rich Low_complexity Low_complexity 1 28 0 1287 125 64 50 chr9 16217913 16217965 -126053479 + L1MC2 LINE L1 6060 6110 -234 2171 114 13 0 chr9 16217965 16218263 -126053181 + AluSx SINE Alu 1 302 -10 1287 125 64 50 chr9 16218263 16218490 -126052954 + L1MC2 LINE L1 6110 6343 -1 205 231 64 77 chr9 16219433 16219511 -126051933 - MER91C DNA MER1_type -31 109 33 613 156 28 9 chr9 16219726 16219835 -126051609 - MER5B DNA MER1_type -67 111 1 22 35 0 0 chr9 16220587 16220616 -126050828 + AT_rich Low_complexity Low_complexity 1 29 0 197 275 87 0 chr9 16221284 16221353 -126050091 + MIR SINE MIR 110 184 -78 1542 199 20 7 chr9 16221355 16221651 -126049793 - AluJb SINE Alu -12 300 1 2468 47 24 3 chr9 16223345 16223643 -126047801 + AluY SINE Alu 1 304 -7 736 334 26 13 chr9 16223744 16224046 -126047398 + L3 LINE CR1 591 896 -681 282 206 359 8 chr9 16224055 16224186 -126047258 + L3 LINE CR1 1242 1418 -159 559 292 64 92 chr9 16224273 16224742 -126046702 + L2 LINE L2 2816 3271 -1 2232 104 0 16 chr9 16225112 16225428 -126046016 + AluSx SINE Alu 1 311 -1 291 291 134 24 chr9 16225670 16225797 -126045647 - MIR SINE MIR -96 166 26 379 274 137 8 chr9 16227333 16227457 -126043987 - MIR3 SINE MIR -15 193 54 276 222 26 111 chr9 16227456 16227573 -126043871 + L2 LINE L2 3160 3266 -6 * 273 306 204 0 chr9 16228244 16228401 -126043043 + MER5A DNA MER1_type 1 189 0 346 217 7 7 chr9 16229981 16230133 -126041311 + (CA)n Simple_repeat Simple_repeat 1 152 0 322 316 22 0 chr9 16230145 16230281 -126041163 + (CA)n Simple_repeat Simple_repeat 1 139 0 274 327 9 9 chr9 16230931 16231041 -126040403 + GA-rich Low_complexity Low_complexity 3 112 0 407 247 64 78 chr9 16232644 16232940 -126038504 + L1MC4a LINE L1 3718 4009 -2137 704 281 73 25 chr9 16232956 16233433 -126038011 + L1MC4a LINE L1 4110 4609 -1537 518 181 29 12 chr9 16233443 16233614 -126037830 + (TA)n Simple_repeat Simple_repeat 1 174 0 274 285 48 88 chr9 16233614 16234158 -126037286 + L1MC4a LINE L1 4620 5141 -1005 279 322 33 25 chr9 16234863 16234984 -126036460 - MER5A DNA MER1_type 0 189 68 198 71 0 0 chr9 16235141 16235169 -126036275 + (CAT)n Simple_repeat Simple_repeat 1 28 0 329 357 52 7 chr9 16235177 16235331 -126036113 - MIR SINE MIR -12 250 90 607 213 18 18 chr9 16235428 16235466 -126035978 + L1ME LINE L1 5625 5662 -500 2132 182 65 5 chr9 16235466 16235868 -126035576 - MSTB LTR MaLR 0 426 1 607 213 18 18 chr9 16235868 16235998 -126035446 + L1ME LINE L1 5661 5793 -369 2280 104 10 0 chr9 16236039 16236346 -126035098 - AluSg SINE Alu 0 310 1 440 287 91 32 chr9 16236358 16236699 -126034745 - L1ME LINE L1 -301 5820 5460 2123 246 188 64 chr9 16237043 16237515 -126033929 + L1MC4a LINE L1 5327 5739 -2069 1681 189 18 0 chr9 16237515 16237796 -126033648 + AluJb SINE Alu 3 288 -24 2123 246 188 64 chr9 16237796 16238727 -126032717 + L1MC4a LINE L1 5739 6952 -856 1656 239 20 64 chr9 16238727 16239271 -126032173 - MLT2B1 LTR ERVL 0 520 1 2123 246 188 64 chr9 16239271 16239455 -126031989 + L1MC4a LINE L1 6952 7112 -696 1213 236 79 52 chr9 16239457 16239974 -126031470 + L1MC4 LINE L1 7508 8038 -4 21 104 0 0 chr9 16240101 16240178 -126031266 + AT_rich Low_complexity Low_complexity 1 77 0 25 65 0 0 chr9 16240206 16240252 -126031192 + AT_rich Low_complexity Low_complexity 1 46 0 309 103 44 0 chr9 16240273 16240341 -126031103 + (TA)n Simple_repeat Simple_repeat 2 72 0 1932 157 0 0 chr9 16240341 16240627 -126030817 - AluSx SINE Alu -26 286 1 405 197 0 0 chr9 16240747 16240813 -126030631 - AluJ/FLAM SINE Alu -228 84 19 320 293 48 34 chr9 16241003 16241211 -126030233 - L1ME LINE L1 -436 5685 5475 193 273 107 33 chr9 16241534 16241684 -126029760 + MIR SINE MIR 100 260 -2 1808 150 3 59 chr9 16243573 16243893 -126027551 - AluSx SINE Alu -10 302 1 22 35 0 0 chr9 16244474 16244503 -126026941 + AT_rich Low_complexity Low_complexity 1 29 0 2554 62 0 3 chr9 16244517 16244826 -126026618 + AluSc SINE Alu 1 308 -1 409 281 37 22 chr9 16245224 16245359 -126026085 + MIR3 SINE MIR 12 148 -60 1092 71 7 0 chr9 16245368 16245509 -126025935 - AluSg/x SINE Alu -5 307 166 250 182 18 0 chr9 16245826 16245881 -126025563 - Charlie1 DNA MER1_type -1 2760 2705 196 116 47 0 chr9 16247358 16247401 -126024043 - MIR SINE MIR -51 211 167 270 0 0 0 chr9 16247617 16247647 -126023797 + (A)n Simple_repeat Simple_repeat 1 30 0 185 318 38 38 chr9 16247706 16247838 -126023606 - L2 LINE L2 -464 2850 2719 296 279 0 0 chr9 16248277 16248345 -126023099 - L2 LINE L2 -248 3065 2998 327 327 36 0 chr9 16248646 16248756 -126022688 - MIR SINE MIR -62 146 33 258 344 42 11 chr9 16248783 16248972 -126022472 - L2 LINE L2 0 3313 3119 3091 169 20 2 chr9 16249473 16250066 -126021378 + L1MB2 LINE L1 5512 6115 -56 1949 111 14 14 chr9 16250296 16250575 -126020869 - AluSg SINE Alu -31 279 1 22 0 0 0 chr9 16250575 16250597 -126020847 + AT_rich Low_complexity Low_complexity 1 22 0 276 333 12 0 chr9 16251364 16251448 -126019996 - L2 LINE L2 0 3313 3229 718 266 37 33 chr9 16251458 16251702 -126019742 - LTR40b LTR ERVL -6 456 212 211 331 70 25 chr9 16251905 16252062 -126019382 - L2 LINE L2 -422 2892 2729 184 268 112 140 chr9 16253519 16253698 -126017746 - MIR3 SINE MIR -11 197 24 302 301 51 3 chr9 16254056 16254182 -126017262 + MIR SINE MIR 7 147 -61 622 217 18 24 chr9 16254393 16254559 -126016885 - L1ME3 LINE L1 -8 6154 5990 1275 183 0 3 chr9 16254586 16254814 -126016630 + MLT2B1 LTR ERVL 275 494 -26 801 211 143 4 chr9 16254814 16255080 -126016364 - L1ME3 LINE L1 -216 5954 5652 264 256 12 0 chr9 16255103 16255185 -126016259 - L1ME3 LINE L1 -479 5683 5601 259 299 140 19 chr9 16255288 16255327 -126016117 - L2 LINE L2 -11 3302 3269 3262 161 12 2 chr9 16255327 16255842 -126015602 + MLT2B1 LTR ERVL 1 520 0 259 299 140 19 chr9 16255842 16255909 -126015535 - L2 LINE L2 -44 3269 3183 180 346 30 20 chr9 16256058 16256159 -126015285 + MIR SINE MIR 25 126 -82 2051 134 0 0 chr9 16256400 16256707 -126014737 + AluSq SINE Alu 1 307 0 1697 190 10 10 chr9 16256862 16257173 -126014271 - AluJb SINE Alu -1 311 1 1516 205 51 0 chr9 16257202 16257558 -126013886 + Charlie1b DNA MER1_type 1 374 -149 303 289 33 8 chr9 16257721 16257842 -126013602 + L1ME3 LINE L1 5872 5995 -167 395 255 0 0 chr9 16257849 16257943 -126013501 + L1ME3 LINE L1 6065 6158 -4 1722 185 0 17 chr9 16257969 16258256 -126013188 + AluJo SINE Alu 5 286 -26 557 39 0 13 chr9 16258259 16258336 -126013108 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 185 293 69 17 chr9 16258354 16258412 -126013032 - MIR SINE MIR -108 100 40 289 259 31 57 chr9 16258495 16258688 -126012756 + L1ME4a LINE L1 5728 5915 -206 2205 171 61 0 chr9 16259001 16259702 -126011742 + L1M1 LINE L1 14 865 -6700 6346 106 19 14 chr9 16259741 16260875 -126010569 + L1MA3 LINE L1 5167 6305 0 28 29 0 0 chr9 16261843 16261878 -126009566 + AT_rich Low_complexity Low_complexity 1 35 0 29381 111 12 57 chr9 16263292 16269732 -126001712 + L1PA7 LINE L1 12 6153 -1 432 280 206 27 chr9 16271093 16271568 -125999876 + L2 LINE L2 1385 1944 -1370 1634 188 70 22 chr9 16271616 16272074 -125999370 - MER31A LTR ERV1 0 543 5 1167 271 171 35 chr9 16272075 16272790 -125998654 + L2 LINE L2 2029 2840 -474 278 283 33 33 chr9 16272834 16272926 -125998518 + LTR67 LTR ERVL 99 190 -367 765 237 17 78 chr9 16273322 16273443 -125998001 + MIR SINE MIR 44 146 -116 1724 180 0 24 chr9 16273443 16273737 -125997707 + AluJo SINE Alu 3 289 -23 765 237 17 78 chr9 16273737 16273847 -125997597 + MIR SINE MIR 146 261 -1 289 371 62 35 chr9 16273883 16274252 -125997192 + L2 LINE L2 2932 3310 -3 212 283 83 55 chr9 16274437 16274453 -125996991 - MIR SINE MIR -46 216 202 414 0 0 0 chr9 16274453 16274499 -125996945 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1626 178 33 4 chr9 16274499 16274774 -125996670 - AluJo SINE Alu -27 285 3 212 283 83 55 chr9 16274774 16274901 -125996543 - MIR SINE MIR -59 203 68 568 213 133 7 chr9 16274918 16275068 -125996376 + MIR SINE MIR 58 226 -36 3676 153 35 13 chr9 16275158 16275793 -125995651 + MER51A LTR ERV1 1 640 0 767 280 19 5 chr9 16276878 16277085 -125994359 - MIR SINE MIR -21 241 32 2575 105 18 7 chr9 16277141 16277550 -125993894 + LTR12 LTR ERV1 98 713 -1 2348 173 106 9 chr9 16277550 16280401 -125991043 - SATR1 Satellite Satellite -2 3126 1 2260 171 110 19 chr9 16280429 16281753 -125989691 - SATR1 Satellite Satellite -1 1444 1 2376 183 14 5 chr9 16281753 16282185 -125989259 + LTR22 LTR ERVK 2 437 -143 30230 65 4 12 chr9 16282185 16287003 -125984441 + L1PA6 LINE L1 1382 6153 -1 2505 159 148 9 chr9 16287003 16288364 -125983080 - SATR1 Satellite Satellite -24 1551 1 1246 206 235 2 chr9 16288379 16288840 -125982604 + SATR1 Satellite Satellite 1 568 -140 1737 145 0 4 chr9 16288851 16289113 -125982331 - AluSx SINE Alu -51 261 1 27 0 0 0 chr9 16289396 16289423 -125982021 + AT_rich Low_complexity Low_complexity 1 27 0 973 196 0 0 chr9 16289432 16289590 -125981854 + AluJb SINE Alu 129 286 -26 2563 50 3 0 chr9 16289880 16290182 -125981262 + AluY SINE Alu 1 303 -8 1709 136 6 92 chr9 16290310 16290648 -125980796 - AluSx SINE Alu -3 309 1 190 266 31 16 chr9 16290901 16290965 -125980479 - L2 LINE L2 0 3272 3208 1730 163 10 27 chr9 16291095 16291395 -125980049 + AluJo SINE Alu 1 295 -17 183 80 0 0 chr9 16291395 16291420 -125980024 + (GA)n Simple_repeat Simple_repeat 1 25 0 697 75 0 19 chr9 16291420 16291527 -125979917 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 439 128 13 26 chr9 16292524 16292602 -125978842 + MADE1 DNA Mariner 1 77 -3 1236 128 10 5 chr9 16293101 16293296 -125978148 - AluSg/x SINE Alu -9 303 108 304 233 14 0 chr9 16293604 16293677 -125977767 - MLT1I LTR MaLR -20 389 316 264 296 89 37 chr9 16293893 16294028 -125977416 - MLT1I LTR MaLR -267 142 1 2144 120 0 0 chr9 16294717 16295008 -125976436 + AluSx SINE Alu 16 306 -6 192 264 51 42 chr9 16295371 16295516 -125975928 + L2 LINE L2 2363 2979 -293 2167 140 0 0 chr9 16295941 16295962 -125975482 - AluSx SINE Alu -4 308 288 258 32 0 0 chr9 16295962 16295993 -125975451 + (TG)n Simple_repeat Simple_repeat 2 32 0 2167 140 0 0 chr9 16295993 16296279 -125975165 - AluSx SINE Alu -23 289 1 2430 161 85 5 chr9 16297178 16297601 -125973843 - MSTB2 LTR MaLR 0 457 1 375 371 8 0 chr9 16298010 16298134 -125973310 - MIR3 SINE MIR -54 154 30 22 0 0 0 chr9 16298311 16298333 -125973111 + AT_rich Low_complexity Low_complexity 1 22 0 1341 158 12 12 chr9 16298359 16298600 -125972844 - L1MA9 LINE L1 -5 6307 6067 629 290 58 37 chr9 16298621 16299000 -125972444 + L1ME4a LINE L1 5560 5946 -175 27 81 0 0 chr9 16299045 16299107 -125972337 + AT_rich Low_complexity Low_complexity 1 62 0 849 119 76 0 chr9 16299108 16299226 -125972218 - FLAM_C SINE Alu -16 127 1 420 270 113 0 chr9 16299706 16299821 -125971623 + L2 LINE L2 3145 3272 0 238 139 0 0 chr9 16299895 16299931 -125971513 - L2 LINE L2 -10 3303 3268 1903 139 24 7 chr9 16300819 16301107 -125970337 - AluSx SINE Alu -17 295 3 198 0 0 0 chr9 16301802 16301824 -125969620 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1964 166 0 0 chr9 16301850 16302151 -125969293 - AluJo SINE Alu -11 301 1 865 148 7 22 chr9 16302571 16302706 -125968738 + FLAM_C SINE Alu 1 133 0 717 268 53 14 chr9 16302815 16303024 -125968420 + MIR SINE MIR 1 217 -45 5261 138 47 11 chr9 16303039 16303912 -125967532 + L1MA7 LINE L1 5387 6290 -1 338 169 28 162 chr9 16304290 16304432 -125967012 + HAL1 LINE L1 35 157 -2350 1838 173 45 43 chr9 16304476 16304537 -125966907 + MLT1C LTR MaLR 65 124 -343 2356 109 0 0 chr9 16304537 16304849 -125966595 + AluSx SINE Alu 1 312 0 1838 173 45 43 chr9 16304849 16305186 -125966258 + MLT1C LTR MaLR 124 464 -3 531 247 135 49 chr9 16305200 16305548 -125965896 + HAL1 LINE L1 184 561 -1946 2183 129 0 0 chr9 16305560 16305855 -125965589 - AluSx SINE Alu -15 297 3 1942 174 159 29 chr9 16305861 16306315 -125965129 + MLT2B1 LTR ERVL 8 520 0 227 309 136 0 chr9 16306344 16306425 -125965019 + HAL1 LINE L1 575 666 -1841 202 442 0 0 chr9 16306444 16306616 -125964828 + (CACCC)n Simple_repeat Simple_repeat 3 174 0 2139 237 92 65 chr9 16306628 16307683 -125963761 + HAL1 LINE L1 759 1842 -665 591 234 166 0 chr9 16307687 16307832 -125963612 - MER5A DNA MER1_type -10 179 11 2194 123 3 10 chr9 16308387 16308696 -125962748 + AluSx SINE Alu 1 307 -5 952 154 20 36 chr9 16308718 16308913 -125962531 - L1 LINE L1 -1544 4602 4411 8085 142 15 2 chr9 16308938 16310188 -125961256 + HSMAR2 DNA Mariner 36 1301 -1 237 167 0 0 chr9 16310188 16310230 -125961214 - L1 LINE L1 -2137 4009 3968 * 2146 182 7 2 chr9 16310229 16310635 -125960809 + L1MA10 LINE L1 4629 5036 -1110 5766 158 37 19 chr9 16310740 16310996 -125960448 + L1MA10 LINE L1 5221 5471 -863 3467 90 16 5 chr9 16310996 16311442 -125960002 - MLT2A2 LTR ERVL -2 451 1 5766 158 37 19 chr9 16311442 16312123 -125959321 + L1MA10 LINE L1 5471 6183 -151 180 111 0 0 chr9 16312123 16312150 -125959294 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5766 158 37 19 chr9 16312150 16312305 -125959139 + L1MA10 LINE L1 6183 6334 0 194 237 0 34 chr9 16313565 16313624 -125957820 - L2 LINE L2 -92 3221 3165 296 298 123 35 chr9 16314191 16314362 -125957082 - MIR3 SINE MIR -7 201 16 481 236 79 53 chr9 16314495 16314684 -125956760 - MIR SINE MIR -48 214 18 2246 128 0 0 chr9 16315566 16315878 -125955566 + AluSx SINE Alu 1 312 0 328 213 138 62 chr9 16316386 16316611 -125954833 - L1ME4a LINE L1 -223 5898 5657 236 216 155 10 chr9 16316905 16317002 -125954442 - L1MC/D LINE L1 -1884 5924 5814 1699 45 10 0 chr9 16317157 16317357 -125954087 - L1PA4 LINE L1 0 6155 5954 241 273 99 16 chr9 16317405 16317526 -125953918 - L1ME4a LINE L1 -2274 5534 5404 30 0 0 0 chr9 16317593 16317623 -125953821 + AT_rich Low_complexity Low_complexity 1 30 0 1935 152 7 0 chr9 16317625 16317914 -125953530 - AluSx SINE Alu -21 291 1 1305 160 82 57 chr9 16317921 16318202 -125953242 - AluJo SINE Alu -24 288 1 950 195 32 41 chr9 16319277 16319498 -125951946 + MER20 DNA MER1_type 1 219 0 1327 214 0 16 chr9 16319722 16319965 -125951479 - MER8 DNA MER2_type 0 239 1 695 236 129 18 chr9 16320455 16320680 -125950764 - MIR SINE MIR 0 262 13 859 214 86 19 chr9 16320851 16321061 -125950383 + MIR SINE MIR 38 261 -1 201 296 0 42 chr9 16321857 16321928 -125949516 + L2 LINE L2 3245 3312 -1 25 0 0 0 chr9 16322187 16322212 -125949232 + GC_rich Low_complexity Low_complexity 1 25 0 376 206 274 0 chr9 16323414 16323516 -125947928 + L2 LINE L2 3168 3297 -16 21 57 0 0 chr9 16323947 16323982 -125947462 + AT_rich Low_complexity Low_complexity 1 35 0 287 288 163 0 chr9 16324273 16324433 -125947011 + L1ME LINE L1 5608 5793 -328 462 264 132 0 chr9 16324690 16324834 -125946610 + Charlie1 DNA MER1_type 1434 1596 -1165 439 235 0 0 chr9 16324834 16324919 -125946525 + FLAM_A SINE Alu 39 123 -19 1484 192 197 22 chr9 16324952 16325499 -125945945 + Charlie1 DNA MER1_type 1624 2266 -495 3594 56 0 0 chr9 16325935 16326382 -125945062 - L1PA6 LINE L1 0 6154 5708 253 247 22 45 chr9 16326432 16326521 -125944923 + MIR SINE MIR 76 162 -100 21 36 0 0 chr9 16326914 16326942 -125944502 + AT_rich Low_complexity Low_complexity 1 28 0 2188 98 0 0 chr9 16326942 16327216 -125944228 + AluSq SINE Alu 1 274 -39 1880 114 46 0 chr9 16327239 16327501 -125943943 - AluSx SINE Alu -8 304 31 350 272 39 19 chr9 16329578 16329681 -125941763 - MIR SINE MIR -71 191 87 271 321 30 30 chr9 16330201 16330332 -125941112 - L1ME LINE L1 -376 5745 5615 240 143 0 0 chr9 16330335 16330377 -125941067 + (TG)n Simple_repeat Simple_repeat 1 42 0 343 208 141 10 chr9 16330408 16330591 -125940853 - L1M2 LINE L1 -798 5493 5293 336 324 50 27 chr9 16330670 16330932 -125940512 - L1ME LINE L1 -990 5156 4889 486 292 133 22 chr9 16332026 16332252 -125939192 + MIR SINE MIR 12 262 0 279 189 54 14 chr9 16332931 16333005 -125938439 + Charlie5 DNA MER1_type 36 112 -2500 1276 150 158 47 chr9 16333031 16333284 -125938160 - AluJo SINE Alu -30 282 2 340 132 143 0 chr9 16333343 16333434 -125938010 + Charlie5 DNA MER1_type 2416 2519 -93 221 222 159 79 chr9 16334042 16334168 -125937276 - MIR SINE MIR -14 248 113 2100 116 20 0 chr9 16334198 16334491 -125936953 - AluSq SINE Alu -14 299 1 297 203 101 13 chr9 16334987 16335066 -125936378 + MER117 DNA MER1_type 5 90 -107 1674 148 63 25 chr9 16335481 16335765 -125935679 - AluJb SINE Alu -17 295 1 936 174 34 6 chr9 16336390 16336568 -125934876 + MER2 DNA MER2_type 28 210 -135 568 196 220 0 chr9 16336676 16336849 -125934595 - MER58C DNA MER1_type -4 211 1 2064 108 7 0 chr9 16336931 16337235 -125934209 + AluSc SINE Alu 1 306 0 189 312 151 0 chr9 16338256 16338349 -125933095 + MIR SINE MIR 34 140 -122 231 351 0 26 chr9 16338367 16338477 -125932967 - MIR SINE MIR -109 153 47 396 299 185 0 chr9 16338477 16338634 -125932810 - MER5A DNA MER1_type 0 189 4 571 200 97 40 chr9 16338643 16338818 -125932626 - MER5A DNA MER1_type 0 189 5 203 228 54 54 chr9 16339005 16339097 -125932347 + MIR SINE MIR 170 261 -1 2171 116 3 0 chr9 16340514 16340808 -125930636 + AluSq SINE Alu 1 295 -18 184 245 57 0 chr9 16340889 16340942 -125930502 - MIR3 SINE MIR -15 193 138 22 0 0 0 chr9 16341686 16341708 -125929736 + AT_rich Low_complexity Low_complexity 1 22 0 1823 256 185 74 chr9 16342678 16342744 -125928700 + L2 LINE L2 635 692 -2622 1912 157 27 0 chr9 16342744 16343038 -125928406 + AluJb SINE Alu 11 312 0 1823 256 185 74 chr9 16343038 16343049 -125928395 + L2 LINE L2 692 700 -2614 252 0 0 0 chr9 16343049 16343077 -125928367 + (TA)n Simple_repeat Simple_repeat 1 28 0 1823 256 185 74 chr9 16343077 16344213 -125927231 + L2 LINE L2 700 2066 -1248 1562 168 14 31 chr9 16344213 16344505 -125926939 - AluJo SINE Alu -21 291 5 1823 256 185 74 chr9 16344505 16344865 -125926579 + L2 LINE L2 2066 2385 -929 7063 25 7 0 chr9 16344865 16345694 -125925750 - L1PA4 LINE L1 -2 6153 5319 1086 246 28 7 chr9 16345696 16345984 -125925460 + L2 LINE L2 2393 2686 -628 34067 77 3 7 chr9 16345984 16351491 -125919953 + L1PA6 LINE L1 666 6146 -8 966 167 33 0 chr9 16351491 16351671 -125919773 + Tigger1 DNA MER2_type 2232 2417 -1 1994 158 3 0 chr9 16351779 16352082 -125919362 + AluSx SINE Alu 1 304 -8 218 32 32 0 chr9 16352425 16352456 -125918988 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2183 88 28 3 chr9 16352458 16352743 -125918701 - AluY SINE Alu -19 292 1 1975 190 55 39 chr9 16352899 16353388 -125918056 + MLT1D LTR MaLR 7 503 -2 734 231 172 13 chr9 16353395 16353633 -125917811 + MLT1G LTR MaLR 10 285 -305 198 156 0 0 chr9 16353646 16353691 -125917753 + GA-rich Low_complexity Low_complexity 2 46 0 880 149 25 65 chr9 16353773 16353974 -125917470 + L1MA2 LINE L1 6101 6293 -11 432 262 87 29 chr9 16354001 16354173 -125917271 + MLT1G LTR MaLR 379 560 -7 24 0 0 0 chr9 16355386 16355410 -125916034 + AT_rich Low_complexity Low_complexity 1 24 0 29 70 0 0 chr9 16356245 16356302 -125915142 + AT_rich Low_complexity Low_complexity 1 57 0 739 269 52 24 chr9 16356890 16357139 -125914305 + MIR SINE MIR 4 259 -3 386 359 70 0 chr9 16357140 16357296 -125914148 - MIR3 SINE MIR -10 198 32 21459 35 1 0 chr9 16357319 16360728 -125910716 + L1PA4 LINE L1 2737 6155 0 823 133 0 44 chr9 16361191 16361326 -125910118 - FLAM_C SINE Alu -4 129 1 283 288 44 12 chr9 16362280 16362440 -125909004 + L1MC4a LINE L1 5666 5830 -1978 180 0 0 0 chr9 16362494 16362514 -125908930 + (TA)n Simple_repeat Simple_repeat 2 21 0 285 236 45 45 chr9 16362593 16362703 -125908741 + L1MC4a LINE L1 6067 6176 -1632 1036 184 0 31 chr9 16362852 16363048 -125908396 + AluJo SINE Alu 1 190 -122 708 191 93 131 chr9 16363263 16363630 -125907814 + L1MC5 LINE L1 6650 7002 -959 560 188 8 16 chr9 16363810 16363938 -125907506 + L1ME1 LINE L1 6033 6159 -7 1710 244 136 31 chr9 16363961 16364529 -125906915 + L2 LINE L2 1713 2357 -957 1916 210 38 46 chr9 16364529 16364967 -125906477 + MLT1D LTR MaLR 5 440 -65 2362 93 0 3 chr9 16364967 16365279 -125906165 - AluY SINE Alu 0 311 1 1916 210 38 46 chr9 16365279 16365344 -125906100 + MLT1D LTR MaLR 440 504 -1 1710 244 136 31 chr9 16365344 16365413 -125906031 + L2 LINE L2 2357 2417 -897 308 315 108 0 chr9 16365429 16365540 -125905904 + L2 LINE L2 3191 3313 0 2235 131 0 0 chr9 16365775 16366087 -125905357 - AluSx SINE Alu 0 312 1 892 181 34 0 chr9 16366195 16366372 -125905072 - Tigger1 DNA MER2_type -1 2417 2235 5342 64 4 3 chr9 16366372 16367071 -125904373 - L1PA6 LINE L1 -5 6149 5450 384 264 122 0 chr9 16367348 16367545 -125903899 - MER112 DNA MER1_type 0 260 40 981 241 38 13 chr9 16367990 16368226 -125903218 + MIR SINE MIR 9 250 -12 1272 157 90 4 chr9 16368291 16368546 -125902898 - L1M4 LINE L1 -985 5161 4885 1670 109 0 38 chr9 16369045 16369284 -125902160 - AluSg/x SINE Alu -5 307 78 927 161 12 48 chr9 16370167 16370335 -125901109 + FRAM SINE Alu 1 160 -16 1850 91 9 3 chr9 16370702 16371140 -125900304 - L1P LINE L1 -744 5410 4418 5464 90 1 13 chr9 16371140 16371574 -125899870 + L1PA7 LINE L1 5395 5820 -334 2286 78 3 7 chr9 16371574 16371870 -125899574 + AluSc SINE Alu 1 295 -14 5464 90 1 13 chr9 16371870 16372202 -125899242 + L1PA7 LINE L1 5820 6154 0 211 305 146 12 chr9 16372444 16372526 -125898918 + MIR3 SINE MIR 14 106 -102 25 0 0 0 chr9 16372821 16372846 -125898598 + AT_rich Low_complexity Low_complexity 1 25 0 1828 141 46 0 chr9 16373313 16373596 -125897848 + AluJb SINE Alu 1 296 -16 1734 208 31 50 chr9 16374042 16374524 -125896920 + L1MC4 LINE L1 7445 7917 -125 543 154 44 15 chr9 16374591 16374725 -125896719 + L1MC4 LINE L1 7668 7783 -2 267 245 157 14 chr9 16375657 16375804 -125895640 - L2 LINE L2 -815 2499 2332 2179 107 0 7 chr9 16376765 16377056 -125894388 + AluJo SINE Alu 1 289 -23 508 155 103 10 chr9 16377249 16377346 -125894098 - U6 snRNA snRNA -1 106 1 2090 125 0 37 chr9 16380437 16380758 -125890686 - AluSx SINE Alu -1 311 3 2135 127 0 3 chr9 16380873 16381172 -125890272 + AluSg SINE Alu 1 298 -12 200 250 45 0 chr9 16381449 16381493 -125889951 + L2 LINE L2 3219 3264 -8 1215 67 11 11 chr9 16382139 16382319 -125889125 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 454 157 13 7 chr9 16382319 16382465 -125888979 + GA-rich Low_complexity Low_complexity 1 146 0 234 206 81 169 chr9 16383305 16383465 -125887979 - MER5A DNA MER1_type 0 189 33 508 261 97 32 chr9 16383828 16384217 -125887227 + MLT1K LTR MaLR 99 588 0 270 261 22 22 chr9 16384263 16384355 -125887089 - L2 LINE L2 -673 2641 2550 2036 135 0 28 chr9 16384445 16384764 -125886680 + AluSx SINE Alu 1 310 -2 2361 82 3 0 chr9 16384889 16385183 -125886261 + AluSc SINE Alu 5 299 -10 21 57 0 0 chr9 16386407 16386442 -125885002 + AT_rich Low_complexity Low_complexity 1 35 0 949 223 47 0 chr9 16386573 16386766 -125884678 + MER58A DNA MER1_type 1 202 -22 876 281 62 9 chr9 16386884 16387204 -125884240 - L1MC/D LINE L1 -2144 5664 5328 615 223 122 101 chr9 16387226 16387652 -125883792 - LTR37B LTR ERV1 -33 435 1 725 130 0 8 chr9 16388565 16388696 -125882748 + (TTCC)n Simple_repeat Simple_repeat 2 131 0 1026 133 0 0 chr9 16388700 16388843 -125882601 - AluSg/x SINE Alu -44 268 126 21 0 0 0 chr9 16388851 16388872 -125882572 + AT_rich Low_complexity Low_complexity 1 21 0 2039 132 3 0 chr9 16388879 16389166 -125882278 - AluSx SINE Alu -24 288 1 23 0 0 0 chr9 16389357 16389380 -125882064 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr9 16390053 16390075 -125881369 + AT_rich Low_complexity Low_complexity 1 22 0 1837 113 102 4 chr9 16392018 16392292 -125879152 - AluSq SINE Alu -12 301 1 326 171 129 14 chr9 16392792 16392862 -125878582 - LTR33A LTR ERVL -2 521 444 547 283 102 20 chr9 16393551 16393859 -125877585 + L2 LINE L2 2709 3041 -272 377 285 135 5 chr9 16393879 16394086 -125877358 + L1M4 LINE L1 4425 4658 -1488 1876 176 68 47 chr9 16394308 16394759 -125876685 + L1MB7 LINE L1 5625 6124 -46 2046 142 3 3 chr9 16394759 16395055 -125876389 + AluSx SINE Alu 1 296 -16 1876 176 68 47 chr9 16395055 16395101 -125876343 + L1MB7 LINE L1 6124 6168 -2 2006 135 3 0 chr9 16395107 16395396 -125876048 + AluSg SINE Alu 1 290 -20 180 111 0 0 chr9 16395508 16395535 -125875909 + (T)n Simple_repeat Simple_repeat 1 27 0 763 268 0 25 chr9 16395683 16395959 -125875485 - L1P LINE L1 -1936 4210 3942 18603 90 5 6 chr9 16395967 16398576 -125872868 + L1P LINE L1 2762 5367 -779 1158 52 0 0 chr9 16398576 16398710 -125872734 + AluYa5 SINE Alu 1 134 -177 1333 89 0 0 chr9 16399772 16399940 -125871504 + AluSg/x SINE Alu 143 310 0 807 246 41 9 chr9 16400018 16400238 -125871206 + L1ME1 LINE L1 5935 6161 -5 690 281 104 5 chr9 16400252 16400473 -125870971 + MLT1I LTR MaLR 167 409 0 1677 168 106 38 chr9 16401027 16401396 -125870048 - MSTD LTR MaLR 0 396 3 2072 139 0 0 chr9 16401527 16401821 -125869623 - AluSx SINE Alu -18 294 1 1192 249 7 20 chr9 16402221 16402514 -125868930 + AluSx SINE Alu 1 289 -13 5985 179 28 63 chr9 16402521 16402714 -125868730 + L1M3 LINE L1 3994 4192 -1976 2329 105 0 0 chr9 16402714 16403018 -125868426 + AluSg SINE Alu 4 307 -3 5985 179 28 63 chr9 16403018 16404196 -125867248 + L1M3 LINE L1 4192 5324 -844 1750 195 0 0 chr9 16404196 16404488 -125866956 + AluJb SINE Alu 1 292 -20 5985 179 28 63 chr9 16404488 16404665 -125866779 + L1M3 LINE L1 5324 5506 -662 2357 124 58 0 chr9 16404665 16405011 -125866433 + MSTC LTR MaLR 1 366 -62 305 170 0 0 chr9 16405010 16405063 -125866381 + Alu SINE Alu 250 302 0 * 22 35 0 0 chr9 16405182 16405211 -125866233 + AT_rich Low_complexity Low_complexity 1 29 0 241 327 33 65 chr9 16406346 16406499 -125864945 - MIR3 SINE MIR -4 204 57 662 293 150 34 chr9 16407566 16408067 -125863377 - L1ME4a LINE L1 -70 6051 5493 228 361 92 8 chr9 16408262 16408381 -125863063 + L2 LINE L2 3139 3267 -5 337 174 139 76 chr9 16408571 16408715 -125862729 + MER112 DNA MER1_type 7 159 -101 192 211 39 19 chr9 16409809 16409861 -125861583 - MIR SINE MIR -112 150 98 515 207 27 9 chr9 16409878 16409989 -125861455 + MLT1J LTR MaLR 17 129 -382 1876 181 11 43 chr9 16410024 16410399 -125861045 - MLT1A2 LTR MaLR -11 363 1 484 336 179 6 chr9 16410399 16410717 -125860727 + MLT1J LTR MaLR 139 511 0 254 337 10 20 chr9 16410717 16410815 -125860629 - MIR SINE MIR -164 98 2 195 285 135 75 chr9 16412136 16412455 -125858989 + L3b LINE CR1 1133 1470 -113 2080 137 13 0 chr9 16412472 16412778 -125858666 + AluSx SINE Alu 1 310 -2 1786 235 73 7 chr9 16413157 16413579 -125857865 - LTR40c LTR ERVL -12 453 4 734 260 140 1 chr9 16413959 16414203 -125857241 + L1M4 LINE L1 4703 4989 -1157 979 130 19 0 chr9 16414274 16414428 -125857016 + LTR54B LTR ERV1 1 157 -341 805 250 0 0 chr9 16414430 16414594 -125856850 + FRAM SINE Alu 2 165 -11 1468 177 53 3 chr9 16414594 16414893 -125856551 + LTR54B LTR ERV1 185 498 0 21 36 0 0 chr9 16414898 16414926 -125856518 + AT_rich Low_complexity Low_complexity 1 28 0 386 188 38 0 chr9 16414946 16415026 -125856418 + L1ME LINE L1 5740 5822 -344 735 186 16 0 chr9 16415036 16415160 -125856284 + FLAM_C SINE Alu 2 127 -6 1443 188 19 50 chr9 16415174 16415452 -125855992 + AluJo SINE Alu 1 269 -43 1854 131 163 27 chr9 16415452 16415751 -125855693 + MSTA LTR MaLR 3 365 -63 2359 106 0 0 chr9 16415751 16416054 -125855390 - AluSx SINE Alu -9 303 1 1854 131 163 27 chr9 16416054 16416129 -125855315 + MSTA LTR MaLR 365 428 0 1443 188 19 50 chr9 16416129 16416169 -125855275 + AluJo SINE Alu 269 309 -3 317 94 38 0 chr9 16416170 16416223 -125855221 + GA-rich Low_complexity Low_complexity 4 58 0 316 136 0 25 chr9 16416227 16416308 -125855136 + (CTG)n Simple_repeat Simple_repeat 2 80 0 1146 122 0 0 chr9 16416322 16416502 -125854942 + (TCC)n Simple_repeat Simple_repeat 1 180 0 379 141 13 39 chr9 16416631 16416709 -125854735 - L1MC1 LINE L1 -235 6098 6023 1751 164 7 27 chr9 16416874 16417173 -125854271 + AluJo SINE Alu 1 293 -19 681 281 134 9 chr9 16417998 16418229 -125853215 + MIR SINE MIR 3 262 0 375 320 28 11 chr9 16419395 16419576 -125851868 + MARNA DNA Mariner 389 572 -14 784 264 25 36 chr9 16419951 16420228 -125851216 + L2 LINE L2 2191 2464 -850 570 234 144 0 chr9 16420231 16420398 -125851046 + L2 LINE L2 2605 2795 -519 2279 212 25 39 chr9 16420437 16420677 -125850767 + LTR40a LTR ERVL 7 249 -270 2075 125 0 7 chr9 16420677 16420980 -125850464 + AluSg SINE Alu 1 301 -9 2279 212 25 39 chr9 16420980 16421258 -125850186 + LTR40a LTR ERVL 249 518 -1 739 264 36 48 chr9 16421259 16421592 -125849852 + L2 LINE L2 2826 3154 -159 888 233 82 0 chr9 16421594 16421800 -125849644 - MER58A DNA MER1_type -1 223 1 2169 177 14 8 chr9 16422037 16422398 -125849046 + MLT1A1 LTR MaLR 3 365 0 368 185 31 154 chr9 16422626 16422733 -125848711 + L1ME LINE L1 5610 5684 -437 1565 174 21 7 chr9 16422733 16423014 -125848430 + AluJb SINE Alu 1 285 -27 368 185 31 154 chr9 16423014 16423101 -125848343 + L1ME LINE L1 5684 5780 -341 278 155 17 0 chr9 16423109 16423167 -125848277 - L1MD3 LINE L1 -10 7985 7927 2179 122 3 7 chr9 16423170 16423473 -125847971 + AluSx SINE Alu 1 302 -10 1536 234 92 34 chr9 16423498 16423946 -125847498 - MLT1E2 LTR MaLR 0 626 153 458 199 19 2 chr9 16424055 16424176 -125847268 - L1M LINE L1 -795 5379 5254 22 70 0 0 chr9 16424331 16424374 -125847070 + AT_rich Low_complexity Low_complexity 1 43 0 1312 256 19 19 chr9 16424525 16424944 -125846500 + L1PBb LINE L1 480 989 -5214 1530 179 10 10 chr9 16424957 16425269 -125846175 + L1PBb LINE L1 1042 1353 -4850 1714 169 23 19 chr9 16425530 16425838 -125845606 - HUERS-P3 LTR ERV1 -8382 537 229 5730 72 27 11 chr9 16425904 16427653 -125843791 + SVA Other Other 1 1762 0 5780 183 9 46 chr9 16427653 16429613 -125841831 + L1PBb LINE L1 1333 3222 -2981 2174 137 0 0 chr9 16429613 16429913 -125841531 + AluSx SINE Alu 1 300 -12 5780 183 9 46 chr9 16429913 16430291 -125841153 + L1PBb LINE L1 3222 3612 -2591 1121 177 0 30 chr9 16431085 16431283 -125840161 - AluSg/x SINE Alu -20 290 99 1805 184 3 0 chr9 16431852 16432146 -125839298 - AluJo SINE Alu -17 295 1 420 294 153 26 chr9 16433110 16433488 -125837956 + L1MC4a LINE L1 5511 5936 -1872 1037 159 0 33 chr9 16434717 16434899 -125836545 - FRAM SINE Alu -3 173 1 627 199 60 7 chr9 16435118 16435269 -125836175 - L1PB4 LINE L1 -7 6149 5991 2762 160 21 0 chr9 16435996 16436466 -125834978 + ERVL LTR ERVL 3697 4176 -1588 246 214 18 0 chr9 16437891 16437947 -125833497 + L1MC5 LINE L1 7311 7367 -594 1432 257 20 20 chr9 16438140 16438584 -125832860 + L1MC4a LINE L1 7365 7808 0 15146 123 21 7 chr9 16438923 16439775 -125831669 + Tigger1 DNA MER2_type 2 840 -1578 2334 102 0 3 chr9 16439775 16440080 -125831364 + AluSg SINE Alu 1 304 -6 15146 123 21 7 chr9 16440080 16441610 -125829834 + Tigger1 DNA MER2_type 840 2418 0 289 265 36 0 chr9 16441851 16441934 -125829510 + L1ME LINE L1 308 393 -5979 244 213 25 25 chr9 16441982 16442062 -125829382 + L1ME LINE L1 1262 1341 -5043 891 254 145 43 chr9 16442064 16442563 -125828881 + L1ME LINE L1 1565 2011 -4552 2088 119 0 3 chr9 16442563 16442848 -125828596 + AluSg SINE Alu 1 284 -26 234 0 0 0 chr9 16442848 16442874 -125828570 + (TA)n Simple_repeat Simple_repeat 2 27 0 891 254 145 43 chr9 16442874 16443124 -125828320 + L1ME LINE L1 2010 2392 -4171 1111 224 67 14 chr9 16443188 16443559 -125827885 + L1ME LINE L1 2471 2861 -3521 282 93 0 23 chr9 16443571 16443614 -125827830 - MER3 DNA MER1_type -167 42 1 2722 42 0 0 chr9 16443840 16444151 -125827293 + AluY SINE Alu 1 311 0 226 313 61 10 chr9 16444879 16444978 -125826466 + MIR3 SINE MIR 102 205 -3 2366 94 0 0 chr9 16445106 16445415 -125826029 + AluSc SINE Alu 1 309 0 2141 112 0 0 chr9 16446817 16447094 -125824350 + AluSx SINE Alu 1 277 -35 1285 88 0 52 chr9 16447763 16447955 -125823489 - AluSq SINE Alu -131 182 1 2438 86 0 0 chr9 16448641 16448942 -125822502 + AluSp SINE Alu 1 301 -12 254 287 201 10 chr9 16449390 16449607 -125821837 + MIR SINE MIR 2 257 -5 926 189 10 36 chr9 16451139 16451229 -125820215 - AluSg/x SINE Alu -9 303 212 2153 128 21 39 chr9 16451229 16451611 -125819833 + THE1C LTR MaLR 1 375 0 926 189 10 36 chr9 16451611 16451716 -125819728 - AluSg/x SINE Alu -100 212 113 2492 73 3 0 chr9 16452098 16452399 -125819045 + AluY SINE Alu 1 302 -9 1406 257 123 13 chr9 16452688 16453151 -125818293 + MLT1G1 LTR MaLR 73 586 -9 571 302 117 66 chr9 16453158 16453569 -125817875 + L3 LINE CR1 985 1416 -161 183 156 0 0 chr9 16454025 16454057 -125817387 + A-rich Low_complexity Low_complexity 1 32 0 308 274 39 10 chr9 16454161 16454263 -125817181 + MIR SINE MIR 81 185 -77 184 344 56 11 chr9 16454402 16454492 -125816952 + L2 LINE L2 3142 3235 -37 254 269 126 42 chr9 16454676 16454795 -125816649 + L2 LINE L2 3170 3298 -15 344 22 0 22 chr9 16454796 16454842 -125816602 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2249 102 0 0 chr9 16457109 16457402 -125814042 + AluSg SINE Alu 1 293 -17 336 209 8 82 chr9 16457455 16457494 -125813950 - L1ME4a LINE L1 -45 6076 6036 2067 89 7 0 chr9 16457494 16457763 -125813681 + AluSp SINE Alu 21 291 -22 336 209 8 82 chr9 16457763 16457857 -125813587 - L1ME4a LINE L1 -85 6036 5953 308 268 0 12 chr9 16457859 16457941 -125813503 - L1MC4 LINE L1 -1348 6694 6614 358 289 35 18 chr9 16458102 16458216 -125813228 - L2 LINE L2 -35 3237 3122 2246 92 0 3 chr9 16458560 16458853 -125812591 + AluY SINE Alu 1 292 -19 931 168 32 5 chr9 16458853 16459064 -125812380 + L1MC3 LINE L1 6138 6333 -11 1925 201 53 25 chr9 16459306 16459794 -125811650 + MLT1D LTR MaLR 1 502 -3 363 23 0 0 chr9 16461022 16461066 -125810378 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 82 0 0 chr9 16461319 16461368 -125810076 + AT_rich Low_complexity Low_complexity 1 49 0 1590 139 45 137 chr9 16462202 16462604 -125808840 + MLT1A1 LTR MaLR 1 365 0 305 317 68 92 chr9 16462621 16462959 -125808485 - L2 LINE L2 0 3272 2943 397 287 67 26 chr9 16462988 16463183 -125808261 - L2 LINE L2 -424 2890 2688 299 173 126 31 chr9 16463185 16463312 -125808132 + L1MC5 LINE L1 7561 7699 -262 505 251 54 25 chr9 16463352 16463650 -125807794 + L1MC5 LINE L1 7702 7925 -36 1786 170 10 3 chr9 16463650 16463939 -125807505 - AluJb SINE Alu -20 292 2 214 332 70 11 chr9 16464192 16464379 -125807065 + L2 LINE L2 2142 2339 -975 306 321 153 21 chr9 16464623 16464813 -125806631 + MIR SINE MIR 38 252 -10 2268 117 0 3 chr9 16464837 16465145 -125806299 - AluSg SINE Alu -3 307 1 282 205 168 0 chr9 16465256 16465341 -125806103 + MLT1I LTR MaLR 40 166 -299 614 312 35 52 chr9 16465720 16466201 -125805243 - MLT1K LTR MaLR -3 473 1 1655 160 0 35 chr9 16466507 16466795 -125804649 + AluJb SINE Alu 1 278 -34 189 214 0 0 chr9 16466797 16466839 -125804605 + GA-rich Low_complexity Low_complexity 3 44 0 232 269 75 21 chr9 16467378 16467471 -125803973 + L2 LINE L2 3146 3243 -29 2518 223 75 43 chr9 16468010 16468885 -125802559 - L1MD2 LINE L1 -412 5947 5008 2035 118 11 0 chr9 16468885 16469192 -125802252 - AluSx SINE Alu 0 310 1 2518 223 75 43 chr9 16469192 16469867 -125801577 - L1MD2 LINE L1 -1351 5008 4356 2225 82 3 10 chr9 16469912 16470216 -125801228 - AluY SINE Alu -9 302 1 21 0 0 0 chr9 16470216 16470237 -125801207 + AT_rich Low_complexity Low_complexity 1 21 0 225 353 95 14 chr9 16471369 16471652 -125799792 + L1MC/D LINE L1 5510 5815 -1993 2353 75 0 10 chr9 16474317 16474612 -125796832 - AluSp SINE Alu -9 304 13 1147 177 27 4 chr9 16474751 16475011 -125796433 + L1MA4 LINE L1 6028 6293 -7 225 321 27 0 chr9 16475047 16475159 -125796285 + GA-rich Low_complexity Low_complexity 1 115 0 555 29 0 0 chr9 16476214 16476283 -125795161 + (TG)n Simple_repeat Simple_repeat 1 69 0 1407 166 55 60 chr9 16476314 16476731 -125794713 + LTR37A LTR ERV1 3 417 -9 1373 154 82 26 chr9 16476892 16477159 -125794285 + AluJo SINE Alu 13 294 -18 2117 108 3 10 chr9 16477186 16477474 -125793970 + AluSq SINE Alu 14 299 -14 2180 119 0 19 chr9 16477479 16477791 -125793653 + AluSx SINE Alu 4 309 -3 326 267 150 0 chr9 16478098 16478218 -125793226 + L2 LINE L2 3169 3306 -7 664 279 99 36 chr9 16478633 16478966 -125792478 - L2 LINE L2 -9 3304 2951 185 237 0 0 chr9 16479616 16479654 -125791790 - MER5A DNA MER1_type -3 186 149 1963 73 150 0 chr9 16479829 16480089 -125791355 + AluSg SINE Alu 2 300 0 194 278 196 21 chr9 16480173 16480270 -125791174 + MIR SINE MIR 30 143 -65 23 0 0 0 chr9 16480528 16480551 -125790893 + AT_rich Low_complexity Low_complexity 1 23 0 426 252 0 55 chr9 16481022 16481149 -125790295 + MIR SINE MIR 65 184 -78 229 217 130 0 chr9 16481436 16481505 -125789939 + MER21A LTR ERV1 182 259 -672 211 259 24 82 chr9 16482328 16482413 -125789031 + MIR SINE MIR 97 176 -86 336 144 167 0 chr9 16482576 16482666 -125788778 - L1MD3 LINE L1 -12 7983 7879 553 158 59 0 chr9 16482666 16482767 -125788677 - L1MC4 LINE L1 -473 7569 7463 677 172 0 0 chr9 16482767 16482866 -125788578 + 5S rRNA rRNA 1 99 -22 2158 229 102 8 chr9 16482866 16483516 -125787928 - L1MC4a LINE L1 -421 7387 6677 864 115 21 110 chr9 16484172 16484363 -125787081 - L1MB2 LINE L1 0 6171 5998 842 153 55 43 chr9 16485661 16485824 -125785620 + MER46A DNA MER2_type 1 165 -71 21 0 0 0 chr9 16486528 16486549 -125784895 + AT_rich Low_complexity Low_complexity 1 21 0 268 152 13 114 chr9 16487380 16487459 -125783985 + L1ME4a LINE L1 5941 6011 -110 29 47 0 0 chr9 16487509 16487552 -125783892 + AT_rich Low_complexity Low_complexity 1 43 0 372 311 122 33 chr9 16488125 16488517 -125782927 - L1ME4a LINE L1 -60 6061 5635 209 56 0 28 chr9 16488875 16488911 -125782533 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2359 82 0 3 chr9 16488930 16489224 -125782220 + AluSq SINE Alu 5 297 -16 21 71 0 0 chr9 16489859 16489901 -125781543 + AT_rich Low_complexity Low_complexity 1 42 0 2324 93 0 0 chr9 16490082 16490371 -125781073 + AluSq SINE Alu 1 289 -24 704 231 68 4 chr9 16490375 16490692 -125780752 + MER93b LTR ERV1 7 373 0 1191 216 93 41 chr9 16491171 16491514 -125779930 + LTR37B LTR ERV1 22 382 -86 313 327 97 29 chr9 16491587 16491936 -125779508 - L1ME4a LINE L1 -1299 4847 4475 2733 146 46 84 chr9 16492114 16492602 -125778842 - L1MB8 LINE L1 0 6178 5720 2356 89 0 13 chr9 16492602 16492906 -125778538 + AluSx SINE Alu 1 300 -12 2733 146 46 84 chr9 16492906 16493070 -125778374 - L1MB8 LINE L1 -458 5720 5551 829 164 15 0 chr9 16493081 16493215 -125778229 - AluJo SINE Alu -176 136 1 1036 192 106 9 chr9 16493216 16493498 -125777946 - L1MB8 LINE L1 -629 5555 5254 22 70 0 0 chr9 16493653 16493696 -125777748 + AT_rich Low_complexity Low_complexity 1 43 0 2701 224 71 14 chr9 16493847 16494591 -125776853 + L1PB4 LINE L1 480 1353 -4850 1714 169 23 19 chr9 16494852 16495160 -125776284 - HUERS-P3 LTR ERV1 -8382 537 229 5255 53 12 5 chr9 16495226 16496343 -125775101 + SVA Other Other 1 1401 0 216 0 0 0 chr9 16496346 16496370 -125775074 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10191 211 21 30 chr9 16496372 16498330 -125773114 + L1PB4 LINE L1 1348 3238 -2965 2161 137 0 0 chr9 16498330 16498630 -125772814 + AluSx SINE Alu 1 300 -12 10191 211 21 30 chr9 16498630 16500000 -125771444 + L1PB4 LINE L1 3238 4619 -1584 1796 181 3 0 chr9 16500000 16500293 -125771151 + AluJb SINE Alu 1 294 -18 5088 156 17 11 chr9 16500294 16501220 -125770224 + L1PB4 LINE L1 5282 6212 -1 287 292 123 27 chr9 16502797 16503016 -125768428 + L3 LINE CR1 795 1034 -543 2229 112 0 10 chr9 16503042 16503337 -125768107 - AluSx SINE Alu -12 300 9 219 278 217 35 chr9 16503370 16503485 -125767959 + L2 LINE L2 3178 3313 0 2039 155 0 3 chr9 16503599 16503909 -125767535 + AluJb SINE Alu 1 309 -3 667 195 82 18 chr9 16504004 16504175 -125767269 + L1MC4 LINE L1 7874 8042 0 819 156 62 34 chr9 16504746 16504925 -125766519 + L1M1 LINE L1 17 200 -7365 1287 182 27 4 chr9 16504927 16505152 -125766292 + AluJo SINE Alu 1 230 -82 317 256 37 60 chr9 16505599 16505772 -125765672 + MIR3 SINE MIR 1 167 -67 197 397 64 19 chr9 16506257 16506413 -125765031 + L2 LINE L2 3033 3195 -77 2202 83 3 17 chr9 16507272 16507582 -125763862 + AluSp SINE Alu 1 306 0 1586 255 123 13 chr9 16507795 16508258 -125763186 + MLT1G1 LTR MaLR 73 586 -9 550 302 117 66 chr9 16508265 16508676 -125762768 + L3 LINE CR1 985 1416 -161 183 156 0 0 chr9 16509132 16509164 -125762280 + A-rich Low_complexity Low_complexity 1 32 0 303 284 39 10 chr9 16509268 16509370 -125762074 + MIR SINE MIR 81 185 -77 249 277 169 0 chr9 16509819 16509902 -125761542 + L2 LINE L2 3161 3257 -15 416 19 0 19 chr9 16509903 16509957 -125761487 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 2269 99 0 0 chr9 16512224 16512517 -125758927 + AluSg SINE Alu 1 293 -17 1606 141 3 31 chr9 16512609 16512899 -125758545 + AluSp SINE Alu 21 302 -11 1919 112 56 0 chr9 16512959 16513253 -125758191 + AluSx SINE Alu 3 311 0 1771 151 3 20 chr9 16513284 16513346 -125758098 + AluJo SINE Alu 13 75 -237 5257 82 14 54 chr9 16513346 16514066 -125757378 + LTR8 LTR ERV1 1 691 0 1771 151 3 20 chr9 16514066 16514295 -125757149 + AluJo SINE Alu 75 299 -13 308 119 0 0 chr9 16514779 16514821 -125756623 + Alu SINE Alu 3 44 -259 1690 81 31 0 chr9 16514823 16515046 -125756398 + LTR8 LTR ERV1 106 335 -356 1988 185 30 22 chr9 16515127 16515489 -125755955 - MLT1A1 LTR MaLR 0 365 1 224 196 84 103 chr9 16515608 16515633 -125755811 - MER5A DNA MER1_type -40 149 125 204 40 0 0 chr9 16515633 16515658 -125755786 + (CAG)n Simple_repeat Simple_repeat 2 26 0 224 196 84 103 chr9 16515658 16515739 -125755705 - MER5A DNA MER1_type -64 125 45 2315 71 3 7 chr9 16515773 16516069 -125755375 - AluY SINE Alu -16 295 1 240 200 0 0 chr9 16516093 16516143 -125755301 + CT-rich Low_complexity Low_complexity 2 51 0 788 205 53 0 chr9 16516147 16516318 -125755126 - L1M4 LINE L1 -1949 4197 4018 782 188 182 11 chr9 16516319 16516500 -125754944 - AluSc SINE Alu -11 298 87 991 210 42 38 chr9 16516503 16516765 -125754679 - L1M4 LINE L1 -2121 4025 3763 198 0 0 0 chr9 16516813 16516835 -125754609 + (TCTCCC)n Simple_repeat Simple_repeat 1 22 0 514 333 119 18 chr9 16516843 16517231 -125754213 + L2 LINE L2 2550 2976 -338 254 258 17 50 chr9 16517350 16517470 -125753974 + L2 LINE L2 3122 3237 -76 902 115 0 89 chr9 16517564 16517603 -125753841 - MSTA LTR MaLR 0 428 387 1960 163 27 0 chr9 16517603 16517904 -125753540 + AluJo SINE Alu 1 309 -3 902 115 0 89 chr9 16517904 16518021 -125753423 - MSTA LTR MaLR -41 387 286 2500 94 12 6 chr9 16518121 16518463 -125752981 - MER4E LTR ERV1 -435 344 1 537 126 0 32 chr9 16518773 16518868 -125752576 + L1PA13 LINE L1 6058 6149 -14 2562 123 27 57 chr9 16518887 16519118 -125752326 + MER4E LTR ERV1 28 264 -502 2130 88 50 0 chr9 16519118 16519401 -125752043 - AluSp SINE Alu -16 297 1 2562 123 27 57 chr9 16519401 16519721 -125751723 + MER4E LTR ERV1 264 741 -25 2213 117 0 0 chr9 16519825 16520123 -125751321 + AluSx SINE Alu 1 298 -14 761 197 31 105 chr9 16520123 16520417 -125751027 - LTR8 LTR ERV1 -174 517 246 1352 74 6 6 chr9 16520538 16520713 -125750731 + AluSq SINE Alu 122 296 -17 592 299 50 84 chr9 16520714 16521118 -125750326 - L2 LINE L2 -616 2698 2309 354 360 13 7 chr9 16521866 16522016 -125749428 - L1MEd LINE L1 -5471 648 498 1284 179 13 0 chr9 16522043 16522278 -125749166 + L1MB7 LINE L1 5591 5828 -356 354 182 0 0 chr9 16522279 16522334 -125749110 + Tigger5 DNA MER2_type 1 55 -2268 * 519 175 48 0 chr9 16522326 16522429 -125749015 + Tigger5 DNA MER2_type 2215 2322 -1 800 231 40 59 chr9 16522458 16522761 -125748683 + L1MB7 LINE L1 5888 6184 0 229 242 161 0 chr9 16522925 16522987 -125748457 + HsTC2 DNA Tc2 1820 1891 -7 318 51 0 0 chr9 16523379 16523418 -125748026 - U2 snRNA snRNA -149 39 1 1838 159 20 0 chr9 16523836 16524132 -125747312 + AluJo SINE Alu 1 302 -10 29 0 0 25 chr9 16524706 16524727 -125746717 + AT_rich Low_complexity Low_complexity 1 22 -17 2312 116 0 0 chr9 16524727 16525038 -125746406 - AluSx SINE Alu -1 311 1 29 0 0 25 chr9 16525038 16525056 -125746388 + AT_rich Low_complexity Low_complexity 22 39 0 216 67 0 0 chr9 16525159 16525189 -125746255 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 844 186 27 22 chr9 16525701 16525884 -125745560 + MLT2B1 LTR ERVL 337 520 0 316 224 318 29 chr9 16525901 16526071 -125745373 - MIR SINE MIR -7 255 37 529 212 19 112 chr9 16526866 16527009 -125744435 + L1MA9 LINE L1 6039 6147 -165 2371 96 0 10 chr9 16527009 16527312 -125744132 + AluSx SINE Alu 1 300 -12 529 212 19 112 chr9 16527312 16527437 -125744007 + L1MA9 LINE L1 6147 6282 -30 3403 163 15 15 chr9 16528254 16528869 -125742575 + L1MC3 LINE L1 7162 7776 -9 26 0 0 0 chr9 16529105 16529131 -125742313 + AT_rich Low_complexity Low_complexity 1 26 0 1370 245 8 45 chr9 16529301 16529437 -125742007 + MLT1A2 LTR MaLR 33 172 -202 2327 65 3 3 chr9 16529437 16529727 -125741717 + AluY SINE Alu 1 290 -21 1370 245 8 45 chr9 16529727 16529945 -125741499 + MLT1A2 LTR MaLR 172 374 0 273 293 117 19 chr9 16529945 16530262 -125741182 + L1ME4a LINE L1 5567 5914 -207 319 281 8 0 chr9 16531119 16531247 -125740197 + (CA)n Simple_repeat Simple_repeat 2 130 0 530 302 116 32 chr9 16531327 16531940 -125739504 + L2 LINE L2 2545 3205 -108 216 0 0 0 chr9 16532004 16532028 -125739416 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 2312 102 0 10 chr9 16532211 16532524 -125738920 + AluSg SINE Alu 1 310 0 2175 130 0 3 chr9 16532526 16532826 -125738618 + AluSx SINE Alu 1 299 -13 183 80 0 0 chr9 16533247 16533272 -125738172 + (A)n Simple_repeat Simple_repeat 1 25 0 507 142 117 92 chr9 16533282 16533402 -125738042 + FLAM_A SINE Alu 10 132 -10 234 257 34 74 chr9 16533546 16533694 -125737750 - MIR SINE MIR -3 259 118 1565 210 41 34 chr9 16533807 16534011 -125737433 + LTR37B LTR ERV1 51 252 -216 2207 130 15 21 chr9 16534011 16534350 -125737094 - MER1B DNA MER1_type 0 337 1 1565 210 41 34 chr9 16534350 16534559 -125736885 + LTR37B LTR ERV1 252 467 -1 205 171 0 57 chr9 16536091 16536161 -125735283 + CT-rich Low_complexity Low_complexity 1 66 0 2345 97 3 0 chr9 16537682 16537980 -125733464 - AluSp SINE Alu -14 299 1 185 304 128 0 chr9 16539008 16539110 -125732334 + MIR SINE MIR 129 243 -19 204 303 144 53 chr9 16539302 16539434 -125732010 + MIR SINE MIR 4 147 -115 2176 89 18 0 chr9 16539786 16540068 -125731376 + AluSp SINE Alu 1 287 -26 237 314 0 23 chr9 16540245 16540331 -125731113 + MIR3 SINE MIR 84 167 -41 22 35 0 0 chr9 16541268 16541297 -125730147 + AT_rich Low_complexity Low_complexity 1 29 0 491 236 61 24 chr9 16541482 16541647 -125729797 - MIR SINE MIR 0 262 92 278 301 62 14 chr9 16541633 16541779 -125729665 + MIR SINE MIR 97 249 -13 * 372 299 37 0 chr9 16542084 16542191 -125729253 + MIR SINE MIR 18 128 -134 728 198 21 109 chr9 16542451 16542523 -125728921 + MER58A DNA MER1_type 3 80 -2340 2368 108 0 6 chr9 16542523 16542837 -125728607 - AluSx SINE Alu 0 312 1 728 198 21 109 chr9 16542837 16543002 -125728442 + MER58A DNA MER1_type 80 219 -5 186 171 0 0 chr9 16543640 16543681 -125727763 + T-rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr9 16543818 16543842 -125727602 + (CAA)n Simple_repeat Simple_repeat 2 25 0 404 277 101 0 chr9 16543848 16544007 -125727437 + MIR SINE MIR 82 256 -6 225 0 0 0 chr9 16544265 16544290 -125727154 + (A)n Simple_repeat Simple_repeat 1 25 0 1952 140 7 7 chr9 16544318 16544610 -125726834 - AluSx SINE Alu -14 298 7 777 223 38 46 chr9 16545245 16545483 -125725961 - MIR SINE MIR 0 262 27 423 303 198 29 chr9 16546284 16546829 -125724615 + L1MB7 LINE L1 4758 5394 -752 330 316 155 20 chr9 16546841 16547145 -125724299 + L1MB7 LINE L1 5439 5783 -2025 25 83 0 0 chr9 16547444 16547504 -125723940 + AT_rich Low_complexity Low_complexity 1 60 0 2555 39 0 26 chr9 16547616 16547925 -125723519 + AluY SINE Alu 1 301 -10 273 136 7 0 chr9 16547977 16548035 -125723409 - L1MC4 LINE L1 0 8042 7936 913 116 22 0 chr9 16548044 16548182 -125723262 + L1MA3 LINE L1 6165 6305 0 2461 51 0 3 chr9 16548209 16548504 -125722940 + AluY SINE Alu 1 294 -17 2134 235 82 50 chr9 16548641 16549550 -125721894 - L1MC4 LINE L1 -141 7901 6963 1987 66 7 26 chr9 16550345 16550617 -125720827 + AluY SINE Alu 45 311 0 4296 150 94 9 chr9 16550823 16551577 -125719867 + LTR1B LTR ERV1 1 818 -8 191 210 258 0 chr9 16551726 16551788 -125719656 - MIR3 SINE MIR -45 163 86 399 205 27 27 chr9 16552087 16552199 -125719245 - MIR SINE MIR -87 175 64 25 0 0 0 chr9 16552735 16552760 -125718684 + AT_rich Low_complexity Low_complexity 1 25 0 501 184 1 13 chr9 16552789 16552897 -125718547 + L1MB7 LINE L1 6018 6125 -55 1354 184 100 139 chr9 16552902 16553585 -125717859 + MER4A LTR ERV1 5 660 -4 2467 122 5 19 chr9 16553811 16554180 -125717264 + THE1B LTR MaLR 1 364 0 392 225 45 18 chr9 16554511 16554622 -125716822 + MIR SINE MIR 64 177 -85 6667 124 88 9 chr9 16554879 16555994 -125715450 + Tigger3b DNA MER2_type 28 1230 -1 340 204 91 91 chr9 16556172 16556304 -125715140 + MER5A DNA MER1_type 57 188 -1 2358 148 21 0 chr9 16556333 16556719 -125714725 + MER57A LTR ERV1 1 394 -9 279 241 139 28 chr9 16557532 16557640 -125713804 - MIR SINE MIR -111 151 32 829 185 74 42 chr9 16557815 16558004 -125713440 - MER58A DNA MER1_type -3 221 27 313 333 0 18 chr9 16558028 16558142 -125713302 + MIR3 SINE MIR 2 113 -95 2198 112 0 7 chr9 16559138 16559433 -125712011 - AluSq SINE Alu -20 293 1 810 183 0 107 chr9 16559459 16559656 -125711788 + AluJb SINE Alu 137 312 0 402 270 20 40 chr9 16559924 16560072 -125711372 - MIR3 SINE MIR -18 190 46 2765 184 6 24 chr9 16560502 16560986 -125710458 + MLT2B3 LTR ERVL 1 475 -79 2492 132 6 3 chr9 16560986 16561349 -125710095 - THE1B LTR MaLR 0 364 1 409 139 76 0 chr9 16561349 16561425 -125710019 + MLT2B2 LTR ERVL 421 502 -13 407 230 97 118 chr9 16561473 16561812 -125709632 + L2 LINE L2 2904 3235 -37 2345 92 3 19 chr9 16563240 16563555 -125707889 + AluSq SINE Alu 1 310 -3 385 245 53 0 chr9 16563833 16563927 -125707517 - MER94 DNA DNA -35 99 1 240 322 70 0 chr9 16563987 16564102 -125707342 + L2 LINE L2 3150 3272 0 2211 122 0 3 chr9 16564109 16564420 -125707024 + AluSx SINE Alu 1 310 -2 263 139 0 89 chr9 16564592 16564671 -125706773 - MER106B DNA MER1_type -154 905 834 2144 119 0 10 chr9 16564677 16564971 -125706473 + AluSx SINE Alu 1 291 -21 512 70 0 12 chr9 16564971 16565199 -125706245 + AluSg SINE Alu 1 305 -7 2297 93 3 17 chr9 16565199 16565501 -125705943 + AluSq SINE Alu 1 298 -15 846 115 96 46 chr9 16565504 16565524 -125705920 - MER106B DNA MER1_type -241 818 800 2396 69 0 3 chr9 16565524 16565814 -125705630 + AluSc SINE Alu 1 289 -20 846 115 96 46 chr9 16565814 16566011 -125705433 - MER106B DNA MER1_type -259 800 590 2146 110 17 3 chr9 16566015 16566306 -125705138 - AluSg SINE Alu -15 295 1 5554 124 33 7 chr9 16566306 16567158 -125704286 - Tigger1 DNA MER2_type -1543 875 2 1596 257 20 20 chr9 16567497 16567941 -125703503 - L1MC4a LINE L1 0 7808 7365 269 214 18 0 chr9 16568134 16568190 -125703254 - L1MC5 LINE L1 -594 7367 7311 2981 162 21 0 chr9 16569616 16570086 -125701358 - ERVL LTR ERVL -1588 4176 3697 2174 95 7 0 chr9 16570212 16570496 -125700948 - AluSp SINE Alu -27 286 1 257 227 91 11 chr9 16570717 16570805 -125700639 - MIR SINE MIR -82 180 86 1020 183 6 0 chr9 16570884 16571053 -125700391 - AluJo/FRAM SINE Alu -9 303 134 2216 106 3 0 chr9 16571053 16571354 -125700090 - AluSg SINE Alu -8 302 1 1042 165 102 82 chr9 16571355 16571394 -125700050 - LTR8 LTR ERV1 -431 260 223 2415 146 72 66 chr9 16571394 16571881 -125699563 - LTR2B LTR ERV1 0 490 1 1042 165 102 82 chr9 16571881 16572096 -125699348 - LTR8 LTR ERV1 -468 223 1 233 287 64 0 chr9 16572096 16572190 -125699254 + L2 LINE L2 2310 2409 -905 701 211 7 0 chr9 16572540 16572687 -125698757 + L1PB4 LINE L1 6002 6149 -7 2423 42 0 11 chr9 16572966 16573281 -125698163 + AluY SINE Alu 1 312 0 351 320 49 0 chr9 16573801 16573923 -125697521 + L2 LINE L2 3182 3309 -4 2193 102 0 3 chr9 16573950 16574265 -125697179 - AluSq SINE Alu 0 314 1 423 325 33 7 chr9 16574597 16574748 -125696696 + MER5B DNA MER1_type 12 166 -12 210 352 0 0 chr9 16575163 16575234 -125696210 - MIR SINE MIR -47 215 145 2165 120 3 7 chr9 16575253 16575554 -125695890 + AluSq SINE Alu 1 300 -13 230 157 0 57 chr9 16577077 16577147 -125694297 + GA-rich Low_complexity Low_complexity 1 66 0 1565 210 41 34 chr9 16578679 16578888 -125692556 - LTR37B LTR ERV1 -1 467 261 2207 130 15 21 chr9 16578888 16579227 -125692217 + MER1B DNA MER1_type 1 337 0 1565 210 41 34 chr9 16579227 16579431 -125692013 - LTR37B LTR ERV1 -207 261 51 234 257 34 74 chr9 16579544 16579692 -125691752 + MIR SINE MIR 118 259 -3 504 168 147 0 chr9 16579860 16579955 -125691489 - FLAM_A SINE Alu -24 118 10 183 80 0 0 chr9 16579965 16579990 -125691454 + (T)n Simple_repeat Simple_repeat 1 25 0 1537 68 5 5 chr9 16580503 16580695 -125690749 + AluSq SINE Alu 105 296 -17 492 309 45 79 chr9 16580696 16581100 -125690344 - L2 LINE L2 -616 2698 2309 349 360 13 7 chr9 16581848 16581998 -125689446 - L1MEd LINE L1 -5471 648 498 1238 183 13 0 chr9 16582025 16582260 -125689184 + L1MB7 LINE L1 5591 5828 -356 362 182 0 0 chr9 16582261 16582316 -125689128 + Tigger5 DNA MER2_type 1 55 -2268 * 514 175 48 0 chr9 16582308 16582411 -125689033 + Tigger5 DNA MER2_type 2215 2322 -1 738 230 40 62 chr9 16582440 16582744 -125688700 + L1MB7 LINE L1 5888 6184 0 317 51 0 0 chr9 16583363 16583402 -125688042 - U2 snRNA snRNA -149 39 1 1855 156 20 0 chr9 16583820 16584115 -125687329 + AluJo SINE Alu 1 301 -11 21 0 0 0 chr9 16584689 16584710 -125686734 + AT_rich Low_complexity Low_complexity 1 21 0 2122 83 0 11 chr9 16584710 16584986 -125686458 - AluSx SINE Alu -1 311 39 186 338 81 0 chr9 16585399 16585473 -125685971 + L2 LINE L2 3020 3099 -173 237 284 80 0 chr9 16585951 16586039 -125685405 + L1ME LINE L1 5520 5614 -507 375 244 74 30 chr9 16586042 16586177 -125685267 - MLT1J LTR MaLR 0 511 371 679 278 85 14 chr9 16586273 16586485 -125684959 - MLT1J LTR MaLR -272 239 13 2106 108 0 29 chr9 16586569 16586884 -125684560 - AluSx SINE Alu -5 307 2 608 264 97 31 chr9 16586884 16586945 -125684499 - L1MC4a LINE L1 -1978 5830 5774 1894 167 3 7 chr9 16586945 16587245 -125684199 - AluJb SINE Alu -13 299 1 608 264 97 31 chr9 16587245 16587441 -125684003 - L1MC4a LINE L1 -2034 5774 5556 1605 179 29 4 chr9 16587462 16587767 -125683677 + AluJo SINE Alu 1 312 0 639 189 116 79 chr9 16587892 16588082 -125683362 + MER34B LTR ERV1 11 207 -358 709 241 45 78 chr9 16588225 16588557 -125682887 - L1ME LINE L1 -5484 586 266 385 220 21 64 chr9 16588590 16588641 -125682803 - L1ME LINE L1 -5924 146 94 2288 42 3 18 chr9 16588641 16588963 -125682481 - AluY SINE Alu 0 318 1 385 220 21 64 chr9 16588963 16589051 -125682393 - L1ME LINE L1 -5976 94 12 553 254 6 18 chr9 16589083 16589252 -125682192 + L2 LINE L2 3113 3279 -34 2292 87 3 0 chr9 16589435 16589733 -125681711 - AluSp SINE Alu -14 299 1 3978 154 42 27 chr9 16589848 16590626 -125680818 - L1MB5 LINE L1 0 6174 5385 3458 65 2 37 chr9 16590663 16590938 -125680506 + THE1B-int LTR MaLR 1137 1391 -189 2233 116 3 0 chr9 16590938 16591239 -125680205 - AluSp SINE Alu -7 306 5 3458 65 2 37 chr9 16591239 16591423 -125680021 + THE1B-int LTR MaLR 1391 1580 0 2047 120 7 26 chr9 16591423 16591731 -125679713 + THE1B LTR MaLR 1 302 -62 1003 127 0 0 chr9 16591831 16591973 -125679471 + AluSp/q SINE Alu 156 297 -16 1192 152 8 99 chr9 16592247 16592462 -125678982 + MER2 DNA MER2_type 1 189 -156 2127 130 3 0 chr9 16592462 16592761 -125678683 - AluSx SINE Alu -12 300 1 1192 152 8 99 chr9 16592761 16592808 -125678636 + MER2 DNA MER2_type 189 239 -106 4533 158 127 58 chr9 16592844 16593977 -125677467 - pTR5 LTR ERV1 0 2438 1352 2046 91 4 14 chr9 16593987 16594263 -125677181 + AluSp SINE Alu 31 303 -10 846 115 96 46 chr9 16594266 16594286 -125677158 - MER106B DNA MER1_type -241 818 800 2325 96 0 0 chr9 16594286 16594578 -125676866 + AluSx SINE Alu 1 292 -20 846 115 96 46 chr9 16594578 16594775 -125676669 - MER106B DNA MER1_type -259 800 590 1264 145 28 33 chr9 16594779 16594993 -125676451 - AluJo SINE Alu -14 298 86 2154 205 47 34 chr9 16595010 16595034 -125676410 - MER106B DNA MER1_type -491 568 546 2324 86 3 10 chr9 16595034 16595335 -125676109 - AluSq SINE Alu -14 299 1 2154 205 47 34 chr9 16595335 16595837 -125675607 - MER106B DNA MER1_type -513 546 35 282 238 57 57 chr9 16596081 16596203 -125675241 - MIR3 SINE MIR -5 203 82 344 237 21 21 chr9 16596207 16596304 -125675140 + L2 LINE L2 3212 3308 -5 181 224 163 0 chr9 16596854 16596903 -125674541 + L2 LINE L2 3215 3271 -1 260 158 0 18 chr9 16596967 16597024 -125674420 - L2 LINE L2 -1 3312 3257 351 284 103 9 chr9 16597129 16597245 -125674199 - MER94 DNA DNA 0 134 8 21 36 0 0 chr9 16598333 16598361 -125673083 + GC_rich Low_complexity Low_complexity 1 28 0 521 241 9 0 chr9 16599287 16599399 -125672045 + L2 LINE L2 3197 3309 -4 820 224 141 4 chr9 16599482 16599723 -125671721 - L1ME1 LINE L1 -12 6154 5881 753 260 56 20 chr9 16599764 16600014 -125671430 - MIR SINE MIR -3 259 1 496 185 34 8 chr9 16600206 16600325 -125671119 + L1MB7 LINE L1 6063 6184 0 653 180 16 33 chr9 16600339 16600461 -125670983 + FLAM_C SINE Alu 1 120 -13 621 129 0 0 chr9 16600470 16600563 -125670881 - AluSp/q SINE Alu -19 294 202 1759 145 0 21 chr9 16600634 16600923 -125670521 + AluSg SINE Alu 3 285 -25 23 33 0 0 chr9 16600923 16600953 -125670491 + AT_rich Low_complexity Low_complexity 1 30 0 371 237 137 108 chr9 16602003 16602281 -125669163 + L2 LINE L2 3028 3313 0 419 202 10 0 chr9 16602678 16602782 -125668662 + (TA)n Simple_repeat Simple_repeat 1 105 0 580 192 31 31 chr9 16602951 16603081 -125668363 + FLAM_A SINE Alu 3 132 -1 279 160 40 0 chr9 16603081 16603156 -125668288 + GA-rich Low_complexity Low_complexity 1 78 0 411 155 0 28 chr9 16603263 16603334 -125668110 + MLT1J LTR MaLR 100 168 -343 8074 111 15 11 chr9 16603401 16603939 -125667505 + Tigger1 DNA MER2_type 616 1150 -1268 2375 97 0 0 chr9 16603939 16604237 -125667207 + AluSc SINE Alu 1 298 -11 8074 111 15 11 chr9 16604237 16604877 -125666567 + Tigger1 DNA MER2_type 1150 1799 -619 1392 209 17 35 chr9 16604886 16605165 -125666279 - AluJo SINE Alu 0 332 57 1967 139 31 50 chr9 16605165 16605547 -125665897 - THE1C LTR MaLR 0 375 1 1392 209 17 35 chr9 16605547 16605604 -125665840 - AluJo SINE Alu -275 57 1 3507 171 11 11 chr9 16605605 16605849 -125665595 + Tigger1 DNA MER2_type 1798 2041 -377 2285 99 0 23 chr9 16605849 16606153 -125665291 + AluSq SINE Alu 3 299 -14 3507 171 11 11 chr9 16606153 16606528 -125664916 + Tigger1 DNA MER2_type 2040 2417 -1 1080 166 0 11 chr9 16606909 16607090 -125664354 + FRAM SINE Alu 1 175 -1 2564 52 0 16 chr9 16607152 16607458 -125663986 + AluY SINE Alu 2 302 -9 273 136 7 0 chr9 16607510 16607568 -125663876 - L1MC4 LINE L1 0 8042 7936 913 116 22 0 chr9 16607577 16607715 -125663729 + L1MA3 LINE L1 6165 6305 0 2433 47 0 10 chr9 16607741 16608038 -125663406 + AluY SINE Alu 1 294 -17 1673 247 89 41 chr9 16608175 16608863 -125662581 - L1MC4 LINE L1 -141 7901 7181 333 0 0 0 chr9 16609095 16609132 -125662312 + (TA)n Simple_repeat Simple_repeat 2 38 0 942 137 0 20 chr9 16609153 16609299 -125662145 + AluSg/x SINE Alu 154 296 -16 816 304 27 14 chr9 16609422 16609787 -125661657 + L1MC4a LINE L1 3879 4248 -1898 561 133 153 0 chr9 16610068 16610166 -125661278 - MER39B LTR ERV1 -2 651 539 749 90 0 0 chr9 16610171 16610271 -125661173 + AluY SINE Alu 197 296 -15 3100 99 24 79 chr9 16611125 16611658 -125659786 - MER39B LTR ERV1 -149 504 1 1213 296 125 8 chr9 16611661 16612277 -125659167 + L1MC4a LINE L1 5488 6175 -1633 899 89 0 0 chr9 16612288 16612400 -125659044 + AluSg SINE Alu 1 112 -198 3908 86 2 6 chr9 16612400 16612913 -125658531 + MER9 LTR ERVK 1 511 0 1535 92 15 0 chr9 16612913 16613108 -125658336 + AluSg SINE Alu 107 304 -6 301 250 67 10 chr9 16613371 16613475 -125657969 + L1M4 LINE L1 4729 4838 -1308 895 226 31 44 chr9 16613561 16613787 -125657657 + MER87 LTR ERV1 1 223 -318 1352 183 0 56 chr9 16613826 16614094 -125657350 + AluJo SINE Alu 11 263 -49 826 153 15 0 chr9 16614130 16614261 -125657183 + FRAM SINE Alu 32 164 -12 846 192 28 11 chr9 16615231 16615408 -125656036 + FRAM SINE Alu 1 176 0 189 107 0 0 chr9 16615804 16615832 -125655612 + (T)n Simple_repeat Simple_repeat 1 28 0 2912 121 17 46 chr9 16615855 16616199 -125655245 - MER4E LTR ERV1 0 766 414 2117 92 50 0 chr9 16616199 16616481 -125654963 + AluSp SINE Alu 1 296 -17 2912 121 17 46 chr9 16616481 16616712 -125654732 - MER4E LTR ERV1 -352 414 28 511 126 0 32 chr9 16616731 16616826 -125654618 - L1PA13 LINE L1 -14 6149 6058 4964 115 23 16 chr9 16617136 16617885 -125653559 + MER4E LTR ERV1 1 754 -25 2230 117 0 0 chr9 16617989 16618287 -125653157 + AluSx SINE Alu 1 298 -14 1613 183 64 117 chr9 16618287 16618576 -125652868 - LTR8 LTR ERV1 -174 517 214 2216 101 3 0 chr9 16618576 16618873 -125652571 - AluSg SINE Alu -12 298 1 1613 183 64 117 chr9 16618873 16618913 -125652531 - LTR8 LTR ERV1 -477 214 173 2415 146 72 66 chr9 16618913 16619400 -125652044 - LTR2B LTR ERV1 0 490 1 1613 183 64 117 chr9 16619400 16619615 -125651829 - LTR8 LTR ERV1 -518 173 1 233 287 64 0 chr9 16619615 16619709 -125651735 + L2 LINE L2 2310 2409 -905 701 211 7 0 chr9 16620059 16620206 -125651238 + L1PB4 LINE L1 6002 6149 -7 2437 46 0 7 chr9 16620485 16620799 -125650645 + AluY SINE Alu 1 312 0 351 320 49 0 chr9 16621319 16621441 -125650003 + L2 LINE L2 3182 3309 -4 2228 102 0 0 chr9 16621468 16621790 -125649654 - AluSq SINE Alu 0 322 1 423 325 33 7 chr9 16622122 16622273 -125649171 + MER5B DNA MER1_type 12 166 -12 210 352 0 0 chr9 16622688 16622759 -125648685 - MIR SINE MIR -47 215 145 2324 106 3 0 chr9 16622778 16623080 -125648364 + AluSq SINE Alu 1 303 -10 445 241 38 15 chr9 16623101 16623234 -125648210 + MIR SINE MIR 119 254 -8 284 247 11 65 chr9 16623246 16623339 -125648105 - MIR3 SINE MIR -109 99 12 1037 172 0 0 chr9 16623379 16623542 -125647902 + FAM SINE Alu 1 163 -12 326 311 44 30 chr9 16623685 16623820 -125647624 + MIR SINE MIR 22 158 -104 2241 109 3 0 chr9 16623872 16624166 -125647278 + AluSx SINE Alu 1 295 -17 1149 101 0 0 chr9 16624301 16624470 -125646974 - AluSg/x SINE Alu 0 300 132 1822 202 74 40 chr9 16624473 16624919 -125646525 - MLT2B1 LTR ERVL -59 461 1 2606 221 118 20 chr9 16624920 16625672 -125645772 - L1MEc LINE L1 -5549 847 22 1092 199 118 103 chr9 16625682 16626131 -125645313 + MER34C LTR ERV1 35 495 -90 1741 167 33 3 chr9 16626131 16626431 -125645013 - AluJb SINE Alu -3 309 1 1092 199 118 103 chr9 16626431 16626524 -125644920 + MER34C LTR ERV1 495 585 0 2200 123 3 3 chr9 16626658 16626967 -125644477 - AluSx SINE Alu -1 311 3 317 43 21 0 chr9 16627166 16627213 -125644231 + (TG)n Simple_repeat Simple_repeat 2 49 0 2395 73 13 0 chr9 16627379 16627679 -125643765 - AluSp SINE Alu -9 304 1 1969 184 40 153 chr9 16627852 16628635 -125642809 - LTR8A LTR ERV1 0 727 34 659 159 18 0 chr9 16628647 16628760 -125642684 + FLAM_A SINE Alu 28 142 0 253 193 18 0 chr9 16628760 16628817 -125642627 - HAL1b LINE L1 -46 1302 1245 1567 162 50 46 chr9 16629029 16629083 -125642361 + MSTB LTR MaLR 3 55 -371 1994 116 0 44 chr9 16629083 16629402 -125642042 + AluSp SINE Alu 1 305 -8 1567 162 50 46 chr9 16629402 16629650 -125641794 + MSTB LTR MaLR 55 306 -120 690 164 0 0 chr9 16629750 16629854 -125641590 - MER1B DNA MER1_type -193 104 1 * 884 187 56 14 chr9 16629854 16630063 -125641381 + LTR37B LTR ERV1 250 467 -1 230 157 0 57 chr9 16631595 16631665 -125639779 + CT-rich Low_complexity Low_complexity 1 66 0 2325 97 3 0 chr9 16633186 16633484 -125637960 - AluSp SINE Alu -14 299 1 213 299 140 0 chr9 16634507 16634614 -125636830 + MIR SINE MIR 122 243 -19 243 308 216 34 chr9 16634806 16635014 -125636430 + MIR SINE MIR 4 249 -13 2151 89 18 0 chr9 16635290 16635572 -125635872 + AluSp SINE Alu 1 287 -26 260 314 0 23 chr9 16635749 16635835 -125635609 + MIR3 SINE MIR 84 167 -41 22 35 0 0 chr9 16636772 16636801 -125634643 + AT_rich Low_complexity Low_complexity 1 29 0 538 236 61 24 chr9 16636986 16637151 -125634293 - MIR SINE MIR 0 262 92 316 301 62 14 chr9 16637137 16637283 -125634161 + MIR SINE MIR 97 249 -13 * 405 299 37 0 chr9 16637588 16637695 -125633749 + MIR SINE MIR 18 128 -134 734 198 21 109 chr9 16637955 16638027 -125633417 + MER58A DNA MER1_type 3 80 -2340 2347 108 0 6 chr9 16638027 16638341 -125633103 - AluSx SINE Alu 0 312 1 734 198 21 109 chr9 16638341 16638506 -125632938 + MER58A DNA MER1_type 80 219 -5 186 171 0 0 chr9 16639144 16639185 -125632259 + T-rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr9 16639322 16639346 -125632098 + (CAA)n Simple_repeat Simple_repeat 2 25 0 450 277 101 0 chr9 16639352 16639511 -125631933 + MIR SINE MIR 82 256 -6 225 0 0 0 chr9 16639769 16639794 -125631650 + (A)n Simple_repeat Simple_repeat 1 25 0 1908 150 3 7 chr9 16639822 16640115 -125631329 - AluSx SINE Alu -14 298 7 848 223 38 46 chr9 16640752 16640990 -125630454 - MIR SINE MIR 0 262 27 195 346 65 19 chr9 16641498 16641605 -125629839 - MIR SINE MIR -10 252 141 511 290 204 35 chr9 16641788 16642333 -125629111 + L1MC/D LINE L1 4758 5394 -752 307 322 155 20 chr9 16642345 16642649 -125628795 + L1MC/D LINE L1 5439 5783 -2025 25 83 0 0 chr9 16642948 16643008 -125628436 + AT_rich Low_complexity Low_complexity 1 60 0 1998 137 0 0 chr9 16643121 16643405 -125628039 + AluSg SINE Alu 2 285 -25 23 33 0 0 chr9 16643405 16643435 -125628009 + AT_rich Low_complexity Low_complexity 1 30 0 442 255 126 97 chr9 16644485 16644763 -125626681 + L2 LINE L2 3028 3313 0 258 85 0 0 chr9 16645159 16645206 -125626238 - LTR66 LTR ERVL -170 440 394 224 212 15 0 chr9 16645214 16645280 -125626164 + (TA)n Simple_repeat Simple_repeat 2 68 0 627 192 31 31 chr9 16645449 16645579 -125625865 + FLAM_A SINE Alu 3 132 -1 279 160 40 0 chr9 16645579 16645654 -125625790 + GA-rich Low_complexity Low_complexity 1 78 0 418 155 0 28 chr9 16645761 16645832 -125625612 + MLT1J LTR MaLR 100 168 -343 8133 113 14 10 chr9 16645899 16646437 -125625007 + Tigger1 DNA MER2_type 616 1150 -1268 2367 97 0 0 chr9 16646437 16646736 -125624708 + AluSc SINE Alu 1 299 -10 8133 113 14 10 chr9 16646736 16647384 -125624060 + Tigger1 DNA MER2_type 1150 1807 -611 1351 213 17 35 chr9 16647385 16647664 -125623780 - AluJo SINE Alu 0 332 57 2094 141 34 52 chr9 16647664 16648046 -125623398 - THE1C LTR MaLR 0 375 1 1351 213 17 35 chr9 16648046 16648103 -125623341 - AluJo SINE Alu -275 57 1 3539 173 11 11 chr9 16648104 16648348 -125623096 + Tigger1 DNA MER2_type 1798 2041 -377 2273 99 0 23 chr9 16648348 16648652 -125622792 + AluSq SINE Alu 3 299 -14 3539 173 11 11 chr9 16648652 16649027 -125622417 + Tigger1 DNA MER2_type 2040 2417 -1 1071 166 0 11 chr9 16649408 16649589 -125621855 + FRAM SINE Alu 1 175 -1 2502 56 0 16 chr9 16649651 16649956 -125621488 + AluY SINE Alu 2 301 -10 407 245 108 0 chr9 16649956 16650058 -125621386 - MER5A DNA MER1_type 0 189 77 224 196 84 103 chr9 16649980 16650061 -125621383 + MER5A DNA MER1_type 45 125 -64 * 204 40 0 0 chr9 16650061 16650086 -125621358 + (CTG)n Simple_repeat Simple_repeat 2 26 0 224 196 84 103 chr9 16650086 16650111 -125621333 + MER5A DNA MER1_type 125 149 -40 1988 185 30 22 chr9 16650230 16650592 -125620852 + MLT1A1 LTR MaLR 1 365 0 1690 81 31 0 chr9 16650673 16650896 -125620548 - LTR8 LTR ERV1 -356 335 106 308 119 0 0 chr9 16650898 16650940 -125620504 - Alu SINE Alu -258 44 3 1804 147 3 20 chr9 16651426 16651656 -125619788 - AluJo SINE Alu -12 300 75 5257 82 14 54 chr9 16651656 16652376 -125619068 - LTR8 LTR ERV1 0 691 1 1804 147 3 20 chr9 16652376 16652438 -125619006 - AluJo SINE Alu -237 75 13 1918 112 56 0 chr9 16652469 16652763 -125618681 - AluSx SINE Alu 0 311 3 2360 83 7 0 chr9 16652823 16653123 -125618321 - AluSp SINE Alu -11 302 1 276 227 91 11 chr9 16653344 16653432 -125618012 - MIR SINE MIR -82 180 86 1681 168 3 48 chr9 16653511 16653680 -125617764 - AluJo SINE Alu -9 303 153 2197 122 0 3 chr9 16653680 16653983 -125617461 - AluSg SINE Alu -8 302 1 1681 168 3 48 chr9 16653983 16654128 -125617316 - AluJo SINE Alu -159 153 3 207 0 0 0 chr9 16654136 16654159 -125617285 + (T)n Simple_repeat Simple_repeat 1 23 0 2220 113 7 0 chr9 16654290 16654590 -125616854 - AluSp SINE Alu -11 302 1 1157 213 38 33 chr9 16654800 16655123 -125616321 + L1MB5 LINE L1 3020 3347 -2799 2332 76 0 23 chr9 16655123 16655424 -125616020 + AluY SINE Alu 1 294 -17 1157 213 38 33 chr9 16655424 16655467 -125615977 + L1MB5 LINE L1 3347 3388 -2758 1377 169 0 4 chr9 16655476 16655718 -125615726 + L1MB5 LINE L1 4447 4687 -1459 2493 105 11 29 chr9 16655719 16655879 -125615565 + THE1C LTR MaLR 1 162 -213 1872 117 0 120 chr9 16655879 16656213 -125615231 - AluSg SINE Alu -5 295 2 2493 105 11 29 chr9 16656213 16656434 -125615010 + THE1C LTR MaLR 162 375 0 11281 112 37 5 chr9 16656434 16657965 -125613479 + THE1C-int LTR MaLR 1 1580 0 2645 106 21 24 chr9 16657965 16658341 -125613103 + THE1C LTR MaLR 1 375 0 2246 202 22 27 chr9 16658341 16658809 -125612635 + L1MB5 LINE L1 4684 5150 -996 1524 175 42 52 chr9 16658809 16658951 -125612493 + AluJo SINE Alu 3 145 -167 2249 110 0 7 chr9 16658951 16659250 -125612194 + AluY SINE Alu 1 297 -14 1524 175 42 52 chr9 16659250 16659415 -125612029 + AluJo SINE Alu 145 307 -5 2246 202 22 27 chr9 16659415 16659500 -125611944 + L1MB5 LINE L1 5150 5234 -912 718 221 0 7 chr9 16659504 16659640 -125611804 + FLAM_A SINE Alu 6 140 -2 560 220 58 23 chr9 16659647 16659820 -125611624 + L1MB5 LINE L1 5221 5399 -747 * 1919 133 10 17 chr9 16659802 16660103 -125611341 + L1PA15 LINE L1 5811 6109 -56 2279 122 8 62 chr9 16660103 16660172 -125611272 - THE1B LTR MaLR 0 364 293 8318 13 6 0 chr9 16660172 16661228 -125610216 + L1PA2 LINE L1 5095 6155 0 2279 122 8 62 chr9 16661228 16661543 -125609901 - THE1B LTR MaLR -71 293 1 3490 61 2 37 chr9 16661543 16661727 -125609717 - THE1B-int LTR MaLR 0 1580 1391 2218 116 3 0 chr9 16661727 16662028 -125609416 + AluSp SINE Alu 5 306 -7 3490 61 2 37 chr9 16662028 16662303 -125609141 - THE1B-int LTR MaLR -189 1391 1137 4029 154 42 27 chr9 16662340 16663118 -125608326 + L1MB5 LINE L1 5385 6174 0 2296 84 3 0 chr9 16663234 16663532 -125607912 + AluSp SINE Alu 1 299 -14 637 243 6 18 chr9 16663715 16663884 -125607560 - L2 LINE L2 -34 3279 3113 391 222 21 69 chr9 16663916 16664007 -125607437 + L1ME LINE L1 10 94 -5976 2244 49 3 14 chr9 16664007 16664328 -125607116 + AluY SINE Alu 1 318 0 391 222 21 69 chr9 16664328 16664379 -125607065 + L1ME LINE L1 94 146 -5924 718 241 45 78 chr9 16664412 16664744 -125606700 + L1ME LINE L1 266 586 -5484 645 189 116 79 chr9 16664887 16665077 -125606367 - MER34B LTR ERV1 -358 207 11 1587 179 29 4 chr9 16665207 16665505 -125605939 - AluJo SINE Alu 0 305 1 625 264 97 31 chr9 16665526 16665722 -125605722 + L1MC4a LINE L1 5556 5774 -2034 1878 167 3 7 chr9 16665722 16666022 -125605422 + AluJb SINE Alu 1 299 -13 625 264 97 31 chr9 16666022 16666083 -125605361 + L1MC4a LINE L1 5774 5830 -1978 2085 108 0 29 chr9 16666083 16666397 -125605047 + AluSx SINE Alu 2 306 -6 685 278 85 14 chr9 16666481 16666693 -125604751 + MLT1J LTR MaLR 13 239 -272 381 244 74 30 chr9 16666789 16666924 -125604520 + MLT1J LTR MaLR 371 511 0 244 284 80 0 chr9 16666927 16667015 -125604429 - L1ME LINE L1 -507 5614 5520 211 338 81 0 chr9 16667493 16667567 -125603877 - L2 LINE L2 -173 3099 3020 2069 82 0 11 chr9 16667980 16668250 -125603194 + AluSx SINE Alu 39 305 -7 238 328 63 16 chr9 16668411 16668600 -125602844 + L2 LINE L2 2142 2339 -975 278 303 206 12 chr9 16668869 16669034 -125602410 + MIR SINE MIR 56 252 -10 2278 114 0 3 chr9 16669058 16669366 -125602078 - AluSg SINE Alu -3 307 1 310 205 168 0 chr9 16669477 16669562 -125601882 + MLT1I LTR MaLR 40 166 -299 782 316 35 52 chr9 16669941 16670422 -125601022 - MLT1K LTR MaLR -3 473 1 225 114 0 0 chr9 16670658 16670693 -125600751 - HSMAR1 DNA Mariner 0 1287 1253 1650 160 0 35 chr9 16670728 16671016 -125600428 + AluJb SINE Alu 1 278 -34 189 214 0 0 chr9 16671018 16671060 -125600384 + GA-rich Low_complexity Low_complexity 3 44 0 225 269 51 26 chr9 16671599 16671677 -125599767 + L2 LINE L2 3146 3225 -47 3580 208 63 98 chr9 16672232 16673107 -125598337 - L1MD2 LINE L1 -412 5947 5042 2032 118 11 0 chr9 16673107 16673414 -125598030 - AluSx SINE Alu 0 310 1 3580 208 63 98 chr9 16673414 16674134 -125597310 - L1MD2 LINE L1 -1317 5042 4298 2135 99 3 10 chr9 16674134 16674438 -125597006 - AluY SINE Alu -9 302 1 3580 208 63 98 chr9 16674438 16674615 -125596829 - L1MD2 LINE L1 -2061 4298 4274 2349 80 3 6 chr9 16674615 16674926 -125596518 - AluY SINE Alu -1 310 1 3580 208 63 98 chr9 16674926 16675175 -125596269 - L1MD2 LINE L1 -2085 4274 4018 782 188 182 11 chr9 16675176 16675357 -125596087 - AluSc SINE Alu -11 298 87 991 210 42 38 chr9 16675360 16675622 -125595822 - L1MD2 LINE L1 -2121 4025 3763 198 0 0 0 chr9 16675670 16675692 -125595752 + (TCTCCC)n Simple_repeat Simple_repeat 1 22 0 528 329 116 18 chr9 16675700 16676089 -125595355 + L2 LINE L2 2550 2976 -338 247 262 8 57 chr9 16676208 16676330 -125595114 + L2 LINE L2 3122 3237 -76 1814 165 29 0 chr9 16676463 16676735 -125594709 + AluJo SINE Alu 1 280 -32 1891 131 7 24 chr9 16676836 16677126 -125594318 - THE1B LTR MaLR -79 285 1 3444 65 2 37 chr9 16677126 16677310 -125594134 - THE1B-int LTR MaLR 0 1580 1391 2218 116 3 0 chr9 16677310 16677611 -125593833 + AluSp SINE Alu 5 306 -7 3444 65 2 37 chr9 16677611 16677886 -125593558 - THE1B-int LTR MaLR -189 1391 1137 4033 154 42 27 chr9 16677923 16678701 -125592743 + L1MB5 LINE L1 5385 6174 0 2270 87 3 0 chr9 16678816 16679114 -125592330 + AluSp SINE Alu 1 299 -14 609 249 6 18 chr9 16679297 16679466 -125591978 - L2 LINE L2 -34 3279 3113 397 224 21 63 chr9 16679498 16679588 -125591856 + L1ME LINE L1 10 94 -5976 2270 46 3 14 chr9 16679588 16679909 -125591535 + AluY SINE Alu 1 318 0 397 224 21 63 chr9 16679909 16679960 -125591484 + L1ME LINE L1 94 146 -5924 684 253 47 64 chr9 16679993 16680290 -125591154 + L1ME LINE L1 266 557 -5513 645 189 116 79 chr9 16680468 16680658 -125590786 - MER34B LTR ERV1 -358 207 11 697 257 109 84 chr9 16680710 16680783 -125590661 + L1MC4a LINE L1 5449 5519 -2289 247 32 0 0 chr9 16680783 16680814 -125590630 + (TTG)n Simple_repeat Simple_repeat 1 180 0 1604 179 29 4 chr9 16680814 16681088 -125590356 - AluJo SINE Alu -31 281 1 697 257 109 84 chr9 16681088 16681305 -125590139 + L1MC4a LINE L1 5519 5729 -2079 1894 167 3 7 chr9 16681305 16681605 -125589839 + AluJb SINE Alu 1 299 -13 697 257 109 84 chr9 16681605 16681666 -125589778 + L1MC4a LINE L1 5729 5787 -2021 2106 108 0 29 chr9 16681666 16681981 -125589463 + AluSx SINE Alu 2 307 -5 697 257 109 84 chr9 16681981 16682065 -125589379 + L1MC4a LINE L1 5787 5898 -1910 679 278 85 14 chr9 16682065 16682277 -125589167 + MLT1J LTR MaLR 13 239 -272 375 244 74 30 chr9 16682373 16682508 -125588936 + MLT1J LTR MaLR 371 511 0 903 298 20 0 chr9 16682549 16682841 -125588603 - L1MC4a LINE L1 -1919 5889 5592 306 0 0 0 chr9 16682845 16682879 -125588565 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 365 44 7 chr9 16683041 16683178 -125588266 + L2 LINE L2 3109 3250 -22 208 229 21 0 chr9 16683178 16683226 -125588218 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2212 120 0 0 chr9 16684410 16684709 -125586735 - AluSx SINE Alu -13 299 1 383 119 0 15 chr9 16684719 16684786 -125586658 - L1MA10 LINE L1 -13 6321 6256 1999 67 7 19 chr9 16684944 16685214 -125586230 - AluY SINE Alu 0 311 45 2134 235 82 50 chr9 16686009 16686918 -125584526 + L1MC4 LINE L1 6963 7901 -141 2474 48 0 3 chr9 16687055 16687350 -125584094 - AluY SINE Alu -17 294 1 913 116 22 0 chr9 16687377 16687515 -125583929 - L1MA3 LINE L1 0 6305 6165 273 136 7 0 chr9 16687524 16687582 -125583862 + L1MC4 LINE L1 7936 8042 0 2431 63 3 3 chr9 16687634 16687936 -125583508 - AluY SINE Alu -9 302 1 634 248 0 0 chr9 16687943 16688072 -125583372 - MLT1A2 LTR MaLR -213 161 33 26 0 0 0 chr9 16688242 16688268 -125583176 + AT_rich Low_complexity Low_complexity 1 26 0 3329 172 14 14 chr9 16688504 16689127 -125582317 - L1MC3 LINE L1 -9 7776 7154 2433 95 0 0 chr9 16689562 16689868 -125581576 + AluSq SINE Alu 1 306 -7 516 62 0 49 chr9 16689903 16689984 -125581460 - L1PA8 LINE L1 -1 6171 6095 2771 66 3 0 chr9 16689990 16690339 -125581105 + L1PA8 LINE L1 5746 6095 -77 501 162 121 10 chr9 16690470 16690569 -125580875 - MER2 DNA MER2_type -1 344 235 2264 108 0 16 chr9 16690574 16690890 -125580554 - AluSq SINE Alu -2 311 1 810 183 0 107 chr9 16690916 16691113 -125580331 + AluJb SINE Alu 137 312 0 402 270 20 40 chr9 16691381 16691529 -125579915 - MIR3 SINE MIR -18 190 46 2765 184 6 24 chr9 16691959 16692443 -125579001 + MLT2B3 LTR ERVL 1 475 -79 2492 132 6 3 chr9 16692443 16692806 -125578638 - THE1B LTR MaLR 0 364 1 409 139 76 0 chr9 16692806 16692882 -125578562 + MLT2B2 LTR ERVL 421 502 -13 407 230 97 118 chr9 16692930 16693269 -125578175 + L2 LINE L2 2904 3235 -37 2353 92 3 19 chr9 16694697 16695013 -125576431 + AluSq SINE Alu 1 311 -2 385 245 53 0 chr9 16695291 16695385 -125576059 - MER94 DNA DNA -35 99 1 240 322 70 0 chr9 16695445 16695560 -125575884 + L2 LINE L2 3150 3272 0 2169 129 0 3 chr9 16695567 16695878 -125575566 + AluSx SINE Alu 1 310 -2 263 139 0 89 chr9 16696050 16696129 -125575315 - MER106B DNA MER1_type -154 905 834 2144 119 0 10 chr9 16696135 16696429 -125575015 + AluSx SINE Alu 1 291 -21 508 70 0 12 chr9 16696429 16696655 -125574789 + AluSg SINE Alu 1 301 -9 697 84 11 0 chr9 16696655 16696750 -125574694 + AluS SINE Alu 1 96 -217 755 98 9 0 chr9 16696856 16696968 -125574476 + L1PBa LINE L1 2788 2900 -3963 2004 107 0 0 chr9 16696970 16697222 -125574222 + AluSc SINE Alu 1 252 -57 1810 133 0 4 chr9 16697223 16697471 -125573973 + AluSq SINE Alu 1 247 -66 1393 165 84 130 chr9 16697970 16698456 -125572988 + MER4C LTR ERV1 1 464 -1 331 221 66 49 chr9 16698667 16698789 -125572655 + L1ME4a LINE L1 5972 6095 -26 1643 77 0 0 chr9 16699090 16699284 -125572160 + AluSc SINE Alu 13 206 -103 1781 166 118 46 chr9 16699297 16699437 -125572007 - LTR10A LTR ERV1 -61 548 419 2505 66 0 3 chr9 16699437 16699739 -125571705 - AluY SINE Alu -10 301 1 1781 166 118 46 chr9 16699739 16700064 -125571380 - LTR10A LTR ERV1 -190 419 2 468 149 0 0 chr9 16700064 16700138 -125571306 + AluSg/x SINE Alu 202 275 -35 1225 181 104 102 chr9 16700147 16700588 -125570856 - LTR7 LTR ERV1 -8 442 1 196 67 0 67 chr9 16700598 16700643 -125570801 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 312 203 114 0 chr9 16700920 16700999 -125570445 + MIR SINE MIR 105 192 -70 2410 95 0 3 chr9 16701312 16701617 -125569827 - AluSx SINE Alu -8 304 1 368 156 0 16 chr9 16701927 16701991 -125569453 - MER116 DNA Mariner -11 69 7 263 100 0 0 chr9 16701999 16702039 -125569405 - MIR SINE MIR -106 156 117 769 190 91 11 chr9 16702289 16702516 -125568928 + AluJo SINE Alu 5 296 -16 238 256 0 77 chr9 16702875 16702906 -125568538 - L2 LINE L2 -1 3271 3239 1923 161 125 10 chr9 16702906 16703322 -125568122 + MLT2C2 LTR ERVL 1 464 0 238 256 0 77 chr9 16703322 16703368 -125568076 - L2 LINE L2 -33 3239 3200 1740 153 0 43 chr9 16703371 16703671 -125567773 + AluJo SINE Alu 1 287 -25 216 364 74 0 chr9 16704240 16704361 -125567083 - L2 LINE L2 -6 3266 3137 2351 99 0 3 chr9 16704723 16705026 -125566418 + AluSq SINE Alu 1 302 -11 380 312 84 14 chr9 16705037 16705252 -125566192 + L1ME LINE L1 5488 5717 -453 676 164 0 57 chr9 16705703 16705843 -125565601 + FLAM_C SINE Alu 11 142 -1 339 148 49 0 chr9 16705849 16705910 -125565534 + L1 LINE L1 2687 2750 -3396 458 184 29 52 chr9 16705916 16706052 -125565392 + L1M1 LINE L1 3296 3428 -4137 506 284 83 97 chr9 16706080 16706288 -125565156 - LTR67 LTR ERVL -19 538 328 1768 160 0 4 chr9 16706288 16706563 -125564881 + AluSx SINE Alu 35 308 -4 506 284 83 97 chr9 16706563 16706899 -125564545 - LTR67 LTR ERVL -229 328 2 183 42 0 0 chr9 16707011 16707035 -125564409 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 2427 110 54 56 chr9 16707057 16707267 -125564177 + MSTA LTR MaLR 1 210 -218 1958 67 0 12 chr9 16707267 16707507 -125563937 + AluY SINE Alu 1 237 -74 2427 110 54 56 chr9 16707507 16707725 -125563719 + MSTA LTR MaLR 210 428 0 1408 211 3 45 chr9 16708646 16708710 -125562734 + AluJo SINE Alu 4 69 -243 2300 101 7 13 chr9 16708710 16709016 -125562428 + AluSg SINE Alu 1 304 -6 1408 211 3 45 chr9 16709016 16709264 -125562180 + AluJo SINE Alu 69 303 -9 1990 105 4 0 chr9 16710308 16710565 -125560879 + AluSx SINE Alu 35 292 -20 747 295 165 24 chr9 16711262 16711716 -125559728 - LTR33 LTR ERVL -3 518 1 219 36 0 0 chr9 16711823 16711851 -125559593 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1963 144 14 0 chr9 16711851 16712136 -125559308 - AluJb SINE Alu -23 289 1 2325 110 0 0 chr9 16712371 16712681 -125558763 + AluSg SINE Alu 1 310 0 1541 161 89 18 chr9 16713044 16713324 -125558120 + AluJo SINE Alu 1 300 -12 204 182 0 0 chr9 16713856 16713900 -125557544 + CT-rich Low_complexity Low_complexity 2 45 0 992 205 162 34 chr9 16713982 16714013 -125557431 - L1ME1 LINE L1 -4 6162 6136 1725 98 87 34 chr9 16714013 16714302 -125557142 - AluSg SINE Alu 0 303 1 1752 146 7 26 chr9 16714305 16714607 -125556837 - AluJo SINE Alu -16 296 1 992 205 162 34 chr9 16714607 16714921 -125556523 - L1ME1 LINE L1 -31 6135 5767 2300 63 0 37 chr9 16714946 16715245 -125556199 + AluY SINE Alu 1 288 -23 399 237 0 0 chr9 16715245 16715254 -125556190 + (TA)n Simple_repeat Simple_repeat 2 10 -100 2927 3 0 0 chr9 16715254 16715561 -125555883 + AluYb8 SINE Alu 1 307 -11 399 237 0 0 chr9 16715561 16715660 -125555784 + (TA)n Simple_repeat Simple_repeat 9 110 0 1897 127 9 50 chr9 16715668 16715815 -125555629 + AluJo SINE Alu 1 152 -160 1757 133 37 20 chr9 16715815 16716109 -125555335 + AluSx SINE Alu 1 299 -13 1897 127 9 50 chr9 16716109 16716284 -125555160 + AluJo SINE Alu 152 310 -2 3989 232 93 28 chr9 16716284 16716666 -125554778 - L1ME1 LINE L1 -383 5781 5425 2334 101 0 13 chr9 16716666 16716972 -125554472 + AluSg SINE Alu 1 302 -8 3989 232 93 28 chr9 16716972 16717411 -125554033 - L1ME1 LINE L1 -739 5425 5016 2463 83 3 3 chr9 16717411 16717723 -125553721 + AluSp SINE Alu 1 312 -1 3989 232 93 28 chr9 16717723 16718579 -125552865 - L1ME1 LINE L1 -1148 5016 3981 1533 190 17 17 chr9 16718583 16718872 -125552572 + AluJb SINE Alu 3 291 -21 521 45 0 0 chr9 16718875 16718942 -125552502 + AluY SINE Alu 2 68 -242 384 297 61 47 chr9 16719151 16719363 -125552081 + L1ME LINE L1 5394 5608 -513 1027 248 51 0 chr9 16719363 16719617 -125551827 - MER110 LTR ERV1 0 491 225 1601 199 16 7 chr9 16719633 16719940 -125551504 - AluJb SINE Alu -2 310 1 2338 102 7 0 chr9 16719986 16720114 -125551330 + AluSc SINE Alu 1 127 -182 233 0 62 0 chr9 16720114 16720146 -125551298 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2338 102 7 0 chr9 16720146 16720321 -125551123 + AluSc SINE Alu 127 306 -3 632 186 107 79 chr9 16720600 16720777 -125550667 - MER63A DNA MER1_type -28 182 1 349 259 47 59 chr9 16720777 16720934 -125550510 - MLT1L LTR MaLR -22 593 439 327 197 16 0 chr9 16720951 16721012 -125550432 - MLT1J LTR MaLR -338 173 112 234 216 149 14 chr9 16721084 16721158 -125550286 - MLT1L LTR MaLR -530 85 2 22 56 0 0 chr9 16721193 16721229 -125550215 + AT_rich Low_complexity Low_complexity 1 36 0 721 186 0 16 chr9 16721229 16721358 -125550086 + FLAM_A SINE Alu 1 127 -6 1979 161 3 0 chr9 16721361 16721666 -125549778 - AluSp SINE Alu -7 306 1 1978 171 67 3 chr9 16721805 16722192 -125549252 - L1MC1 LINE L1 0 6333 5922 1009 152 0 0 chr9 16722192 16722343 -125549101 - Tigger1 DNA MER2_type 0 2418 2268 1757 179 0 3 chr9 16722350 16722635 -125548809 + AluJb SINE Alu 9 292 -20 944 192 0 0 chr9 16722636 16722803 -125548641 + AluJb SINE Alu 140 306 -6 1943 89 13 73 chr9 16722806 16722880 -125548564 - Tigger1 DNA MER2_type -518 1900 1823 792 122 0 0 chr9 16722880 16722987 -125548457 + U6 snRNA snRNA 1 107 0 6773 79 8 9 chr9 16722987 16724019 -125547425 + L1PA10 LINE L1 5133 6168 0 1943 89 13 73 chr9 16724019 16724256 -125547188 - Tigger1 DNA MER2_type -593 1825 1607 1458 175 7 42 chr9 16724264 16724549 -125546895 + AluJo SINE Alu 9 283 -29 1842 143 0 0 chr9 16724560 16724825 -125546619 - AluSx SINE Alu -5 307 43 1066 90 7 0 chr9 16724864 16725009 -125546435 - Tigger1 DNA MER2_type -808 1610 1465 24 0 0 0 chr9 16725012 16725036 -125546408 + AT_rich Low_complexity Low_complexity 1 24 0 2215 103 14 0 chr9 16725036 16725327 -125546117 - AluY SINE Alu -14 297 3 2332 101 3 0 chr9 16725331 16725627 -125545817 - AluSx SINE Alu -15 297 1 429 250 0 39 chr9 16725666 16725770 -125545674 - AluJo SINE Alu -92 220 121 1453 190 17 71 chr9 16725782 16726280 -125545164 + L1M4c LINE L1 1568 2143 -4241 305 221 70 0 chr9 16726282 16726368 -125545076 - Tigger5 DNA MER2_type -17 2306 2215 288 211 0 0 chr9 16726360 16726412 -125545032 - Tigger5 DNA MER2_type -2268 55 4 * 2181 123 3 0 chr9 16726461 16726754 -125544690 + AluSx SINE Alu 1 294 -18 611 204 18 0 chr9 16726787 16726900 -125544544 + FLAM_A SINE Alu 12 126 -16 278 266 28 9 chr9 16726914 16727023 -125544421 + L1M4c LINE L1 2615 2725 -3657 1377 211 0 4 chr9 16727023 16727289 -125544155 + AluJb SINE Alu 40 304 -8 3130 204 113 96 chr9 16727289 16728762 -125542682 + L1M4c LINE L1 2715 4212 -2170 2157 110 10 0 chr9 16728762 16729052 -125542392 + AluSx SINE Alu 1 293 -19 3441 203 61 27 chr9 16729052 16729170 -125542274 + L1M4c LINE L1 4599 4712 -1670 2423 89 0 3 chr9 16729170 16729474 -125541970 + AluSp SINE Alu 1 303 -10 3441 203 61 27 chr9 16729474 16730151 -125541293 + L1M4c LINE L1 4712 5430 -952 2227 133 0 0 chr9 16730151 16730459 -125540985 + AluSq SINE Alu 1 308 -5 3441 203 61 27 chr9 16730459 16730550 -125540894 + L1M4c LINE L1 5430 5516 -866 1206 104 12 0 chr9 16730550 16730713 -125540731 - AluSq SINE Alu -15 298 134 2317 100 0 0 chr9 16730713 16731004 -125540440 - AluSx SINE Alu -21 291 1 308 242 70 19 chr9 16731234 16731252 -125540192 - L1MA10 LINE L1 -1 6333 6316 1713 208 43 69 chr9 16731252 16731493 -125539951 - L1ME1 LINE L1 -9 6157 5911 2064 126 7 0 chr9 16731493 16731778 -125539666 + AluSx SINE Alu 1 287 -25 1713 208 43 69 chr9 16731778 16732042 -125539402 - L1ME1 LINE L1 -255 5911 5665 1970 141 0 52 chr9 16732044 16732231 -125539213 - AluSx SINE Alu -2 310 115 221 0 35 0 chr9 16732231 16732260 -125539184 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1946 134 7 0 chr9 16732260 16732536 -125538908 - AluSg SINE Alu -30 280 3 1970 141 0 52 chr9 16732536 16732674 -125538770 - AluSx SINE Alu -195 117 1 1461 133 5 5 chr9 16732675 16732886 -125538558 + THE1B LTR MaLR 154 364 0 * 1886 176 9 3 chr9 16732886 16733203 -125538241 - MLT2C2 LTR ERVL -145 319 1 1427 212 24 17 chr9 16733207 16733500 -125537944 + AluJb SINE Alu 1 295 -17 428 119 179 0 chr9 16733525 16733609 -125537835 - L1ME1 LINE L1 -549 5617 5519 2849 140 76 23 chr9 16733709 16734224 -125537220 - MER34C LTR ERV1 0 585 44 314 193 18 0 chr9 16734601 16734658 -125536786 - MLT2B2 LTR ERVL -263 252 195 192 40 0 0 chr9 16735231 16735256 -125536188 + (TC)n Simple_repeat Simple_repeat 2 26 0 219 337 20 10 chr9 16735467 16735568 -125535876 + CT-rich Low_complexity Low_complexity 4 105 0 372 134 0 45 chr9 16735628 16735695 -125535749 + MER4D LTR ERV1 1 64 -808 * 708 110 46 0 chr9 16735692 16735801 -125535643 + MER4E LTR ERV1 653 766 0 5952 128 64 66 chr9 16735807 16736019 -125535425 + MER4E-int LTR ERV1 22 233 -6525 2222 82 3 10 chr9 16736019 16736310 -125535134 - AluY SINE Alu -22 289 1 5952 128 64 66 chr9 16736310 16737085 -125534359 + MER4E-int LTR ERV1 233 1008 -5750 767 186 0 0 chr9 16737085 16737209 -125534235 - FLAM_C SINE Alu -9 124 1 5952 128 64 66 chr9 16737209 16737349 -125534095 + MER4E-int LTR ERV1 1008 1147 -5611 342 0 0 0 chr9 16737349 16737387 -125534057 + (TG)n Simple_repeat Simple_repeat 2 39 0 1188 183 56 37 chr9 16737387 16737796 -125533648 + MER4E-int LTR ERV1 1161 1673 -4925 2042 128 3 7 chr9 16737815 16738112 -125533332 + AluSc SINE Alu 1 296 -13 10196 127 18 13 chr9 16738131 16739490 -125531954 + L1PBa LINE L1 1 1371 -5492 2288 119 0 0 chr9 16739490 16739792 -125531652 - AluSg SINE Alu -8 302 1 10196 127 18 13 chr9 16739792 16740012 -125531432 + L1PBa LINE L1 1371 1588 -5275 2996 89 49 2 chr9 16740038 16740485 -125530959 + L1PBa LINE L1 2076 2543 -4320 516 204 76 0 chr9 16740586 16740718 -125530726 - L1M4 LINE L1 -2161 3985 3844 925 201 23 11 chr9 16740718 16740892 -125530552 - AluJb SINE Alu -11 301 126 2985 215 52 45 chr9 16740894 16741494 -125529950 - L1M4 LINE L1 -2652 3494 2900 2236 93 7 3 chr9 16741494 16741784 -125529660 + AluSc SINE Alu 2 292 -17 2985 215 52 45 chr9 16741784 16741818 -125529626 - L1M4 LINE L1 -3246 2900 2868 243 0 0 0 chr9 16741818 16741845 -125529599 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1566 175 36 7 chr9 16741849 16742123 -125529321 - AluJo SINE Alu -30 282 1 2985 215 52 45 chr9 16742123 16742485 -125528959 - L1M4 LINE L1 -3280 2866 2485 282 286 157 11 chr9 16742629 16742814 -125528630 - L1MEc LINE L1 -6076 320 109 752 171 0 36 chr9 16742830 16742970 -125528474 - FLAM_C SINE Alu -8 135 1 1879 212 54 5 chr9 16743116 16743502 -125527942 + LTR57 LTR ERVL 7 411 0 331 343 93 23 chr9 16743538 16743754 -125527690 + MIR SINE MIR 26 256 -6 2517 80 0 3 chr9 16744342 16744654 -125526790 + AluY SINE Alu 1 311 0 253 258 289 16 chr9 16744908 16745036 -125526408 - MIR3 SINE MIR -21 187 25 749 163 14 0 chr9 16745236 16745377 -125526067 + L1MA10 LINE L1 6179 6321 -13 2149 128 0 0 chr9 16745387 16745684 -125525760 + AluSx SINE Alu 1 297 -15 208 229 21 0 chr9 16746869 16746917 -125524527 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 282 360 48 8 chr9 16746917 16747042 -125524402 - L2 LINE L2 -22 3250 3121 252 0 0 0 chr9 16747216 16747244 -125524200 + (CA)n Simple_repeat Simple_repeat 2 29 0 915 294 20 0 chr9 16747248 16747540 -125523904 + L1MC4a LINE L1 5592 5889 -1919 6767 67 21 60 chr9 16747540 16749658 -125521786 + SVA Other Other 4 1386 0 2286 110 7 0 chr9 16749721 16750029 -125521415 + AluSg SINE Alu 1 310 0 2006 139 21 68 chr9 16750685 16750910 -125520534 - MLT1A1 LTR MaLR -2 363 162 1552 148 112 0 chr9 16750910 16751188 -125520256 - AluJo SINE Alu -3 309 1 2006 139 21 68 chr9 16751188 16751343 -125520101 - MLT1A1 LTR MaLR -203 162 1 2465 105 5 14 chr9 16751503 16751874 -125519570 - L1PB1 LINE L1 -1 6150 5783 570 83 68 0 chr9 16751881 16752014 -125519430 + (TA)n Simple_repeat Simple_repeat 1 142 0 3951 167 8 1 chr9 16752023 16753279 -125518165 - L1PB1 LINE L1 -360 5791 4526 2384 62 0 0 chr9 16753281 16753555 -125517889 - AluSg SINE Alu -36 274 1 7445 213 18 16 chr9 16753556 16754341 -125517103 - L1PB1 LINE L1 -2187 3959 3177 194 0 39 0 chr9 16754341 16754367 -125517077 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7445 213 18 16 chr9 16754367 16755199 -125516245 - L1PB1 LINE L1 -2969 3177 2335 2330 107 0 7 chr9 16755199 16755507 -125515937 + AluY SINE Alu 1 306 -5 7445 213 18 16 chr9 16755507 16755606 -125515838 - L1PB1 LINE L1 -3811 2335 2238 798 132 0 0 chr9 16755736 16755850 -125515594 - AluY SINE Alu -56 255 142 1320 125 0 0 chr9 16755850 16756026 -125515418 - AluSc SINE Alu -133 176 1 1014 164 73 32 chr9 16756030 16756250 -125515194 - AluJb SINE Alu 0 312 84 2479 81 13 0 chr9 16756277 16756584 -125514860 + AluSp SINE Alu 1 311 -2 26 0 0 0 chr9 16756973 16756999 -125514445 + AT_rich Low_complexity Low_complexity 1 26 0 2118 129 0 3 chr9 16756999 16757294 -125514150 - AluSx SINE Alu -18 294 1 325 193 0 0 chr9 16757307 16757364 -125514080 - FLAM_A SINE Alu 0 133 77 509 164 74 187 chr9 16757372 16757668 -125513776 + Charlie8 DNA MER1_type 59 1415 -1002 229 75 104 119 chr9 16758450 16758517 -125512927 - MLT1K LTR MaLR -1 587 522 378 79 175 0 chr9 16758535 16758598 -125512846 + MER34 LTR ERV1 1 74 -468 25 31 0 0 chr9 16758609 16758641 -125512803 + AT_rich Low_complexity Low_complexity 1 32 0 2376 70 0 0 chr9 16758641 16758925 -125512519 - AluSg SINE Alu -26 284 1 4124 98 52 8 chr9 16758927 16759536 -125511908 + LTR9B LTR ERV1 9 644 0 3249 126 2 4 chr9 16759536 16760009 -125511435 + MER34 LTR ERV1 71 542 0 331 252 28 37 chr9 16760209 16760316 -125511128 - MLT1K LTR MaLR -325 263 158 1519 144 5 5 chr9 16760419 16760641 -125510803 + AluJb SINE Alu 1 222 -90 1069 177 160 86 chr9 16760641 16760758 -125510686 - LTR7 LTR ERV1 0 450 343 2437 90 0 0 chr9 16760758 16761059 -125510385 - AluSg SINE Alu -9 301 1 1069 177 160 86 chr9 16761059 16761360 -125510084 - LTR7 LTR ERV1 -107 343 1 469 191 0 0 chr9 16761361 16761450 -125509994 + AluJb SINE Alu 219 307 -5 2373 102 0 6 chr9 16761456 16761771 -125509673 + AluSp SINE Alu 1 313 0 1182 186 103 7 chr9 16761797 16762088 -125509356 + L1MB8 LINE L1 5300 5618 -566 595 254 41 18 chr9 16762098 16762267 -125509177 + MER8 DNA MER2_type 7 179 -60 355 191 0 0 chr9 16762243 16762306 -125509138 + MER2 DNA MER2_type 283 345 0 * 868 136 212 0 chr9 16762309 16762493 -125508951 + L1MB8 LINE L1 5634 5856 -318 2099 212 132 18 chr9 16762494 16763145 -125508299 - MER50 LTR ERV1 0 734 10 1159 187 117 11 chr9 16763151 16763434 -125508010 + L1MB8 LINE L1 5854 6166 -12 23 54 0 0 chr9 16764089 16764126 -125507318 + GC_rich Low_complexity Low_complexity 1 37 0 317 303 59 38 chr9 16765368 16765655 -125505789 - L1MC4 LINE L1 -30 8012 7720 947 195 132 3 chr9 16765735 16766022 -125505422 - MER5C DNA MER1_type 0 324 1 186 43 0 0 chr9 16766529 16766552 -125504892 + (TTATG)n Simple_repeat Simple_repeat 2 24 0 1852 122 11 7 chr9 16766552 16766839 -125504605 - AluSx SINE Alu -24 288 1 249 319 148 23 chr9 16767065 16767179 -125504265 + L2 LINE L2 2699 2797 -517 1962 128 30 3 chr9 16767179 16767475 -125503969 - AluSp SINE Alu -9 304 1 249 319 148 23 chr9 16767475 16767576 -125503868 + L2 LINE L2 2797 2941 -373 299 299 90 15 chr9 16767734 16767868 -125503576 + L2 LINE L2 3169 3312 -1 23 0 0 0 chr9 16768337 16768360 -125503084 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr9 16768658 16768684 -125502760 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1886 131 11 18 chr9 16768686 16768969 -125502475 - AluSx SINE Alu -31 281 1 1893 111 0 0 chr9 16769204 16769456 -125501988 + AluSx SINE Alu 54 305 -7 1457 47 0 0 chr9 16769683 16769852 -125501592 + AluY SINE Alu 134 302 -9 259 322 76 52 chr9 16770120 16770698 -125500746 + HAL1b LINE L1 54 645 -703 362 306 24 0 chr9 16771163 16771333 -125500111 + L1MC4a LINE L1 2232 2405 -3741 1601 201 7 3 chr9 16771471 16771774 -125499670 + AluJo SINE Alu 1 304 -8 249 175 41 41 chr9 16771774 16771871 -125499573 + L1MC4a LINE L1 3063 3159 -2987 818 219 61 117 chr9 16771872 16772214 -125499230 + L1MC4a LINE L1 5609 5931 -1877 1107 207 204 36 chr9 16772215 16772829 -125498615 + LTR41 LTR ERVL 1 766 -7 793 214 89 77 chr9 16772837 16773187 -125498257 + L1MC4a LINE L1 5936 6289 -1519 198 0 0 0 chr9 16773207 16773229 -125498215 + (T)n Simple_repeat Simple_repeat 1 22 0 426 194 0 0 chr9 16773229 16773301 -125498143 - U6 snRNA snRNA -9 98 27 4451 220 64 59 chr9 16773374 16774790 -125496654 + L1MC4a LINE L1 6387 7808 0 4509 153 58 14 chr9 16775449 16775731 -125495713 - L1MB4 LINE L1 -2 6414 6146 2220 112 7 0 chr9 16775731 16776027 -125495417 - AluSx SINE Alu -14 298 1 4509 153 58 14 chr9 16776027 16776612 -125494832 - L1MB4 LINE L1 -270 6146 5509 2254 110 0 0 chr9 16776612 16776903 -125494541 + AluSx SINE Alu 1 291 -21 1206 104 12 0 chr9 16776903 16777066 -125494378 + AluSq SINE Alu 134 298 -15 3441 203 61 27 chr9 16777066 16777157 -125494287 - L1MB4 LINE L1 -866 5516 5430 2227 133 0 0 chr9 16777157 16777465 -125493979 - AluSq SINE Alu -5 308 1 3441 203 61 27 chr9 16777465 16778142 -125493302 - L1MB4 LINE L1 -952 5430 4712 2423 89 0 3 chr9 16778142 16778446 -125492998 - AluSp SINE Alu -10 303 1 3441 203 61 27 chr9 16778446 16778564 -125492880 - L1MB4 LINE L1 -1670 4712 4599 2157 110 10 0 chr9 16778564 16778854 -125492590 - AluSx SINE Alu -19 293 1 3130 204 113 96 chr9 16778854 16780327 -125491117 - L1MB4 LINE L1 -2170 4212 2715 1377 211 0 4 chr9 16780327 16780593 -125490851 - AluJb SINE Alu -8 304 40 278 266 28 9 chr9 16780593 16780702 -125490742 - L1MB4 LINE L1 -3657 2725 2615 611 204 18 0 chr9 16780716 16780829 -125490615 - FLAM_A SINE Alu -16 126 12 2181 123 3 0 chr9 16780862 16781155 -125490289 - AluSx SINE Alu -18 294 1 288 211 0 0 chr9 16781204 16781256 -125490188 + Tigger5 DNA MER2_type 4 55 -2268 * 305 221 70 0 chr9 16781248 16781334 -125490110 + Tigger5 DNA MER2_type 2215 2306 -17 1453 190 17 71 chr9 16781336 16781834 -125489610 - L1MB4 LINE L1 -4241 2143 1568 429 250 0 39 chr9 16781846 16781950 -125489494 + AluJo SINE Alu 121 220 -92 2666 47 0 0 chr9 16781989 16782289 -125489155 + AluY SINE Alu 1 300 -11 306 153 0 69 chr9 16782311 16782383 -125489061 - L1MB4 LINE L1 -4807 1577 1511 252 89 0 44 chr9 16782429 16782474 -125488970 - L1MA5 LINE L1 -4 6296 6254 915 168 25 3 chr9 16782534 16782706 -125488738 - L1P5 LINE L1 -473 5683 5514 5606 74 19 38 chr9 16782712 16783539 -125487905 - SVA Other Other 0 1386 575 23 33 0 0 chr9 16783541 16783571 -125487873 + GC_rich Low_complexity Low_complexity 1 30 0 4778 198 29 5 chr9 16783760 16784941 -125486503 - L1M LINE L1 -792 5354 4187 2000 70 30 4 chr9 16784969 16785239 -125486205 - AluSq SINE Alu -36 277 1 286 298 33 33 chr9 16785538 16785689 -125485755 - LTR41 LTR ERVL -622 151 1 24 53 0 0 chr9 16785711 16785749 -125485695 + AT_rich Low_complexity Low_complexity 1 38 0 2222 100 0 7 chr9 16785777 16786076 -125485368 - AluSx SINE Alu -15 297 1 894 158 6 25 chr9 16786223 16786381 -125485063 + AluJo SINE Alu 1 155 -157 361 75 0 0 chr9 16786565 16786618 -125484826 - Alu SINE Alu -247 53 1 243 250 13 53 chr9 16787873 16787949 -125483495 + MLT1K LTR MaLR 152 224 -364 842 269 123 48 chr9 16787996 16788579 -125482865 + MER77 LTR ERV1 66 652 -13 1602 260 26 33 chr9 16788877 16789550 -125481894 - L1PA13 LINE L1 -4718 2863 2256 434 318 7 0 chr9 16790273 16790424 -125481020 - L1PA13 LINE L1 -5276 2298 2147 676 346 27 29 chr9 16790448 16790896 -125480548 - L1PA13 LINE L1 -6200 1374 928 5904 74 25 13 chr9 16791106 16791962 -125479482 - SVA Other Other -518 868 3 442 228 41 0 chr9 16792020 16792165 -125479279 - L1M4 LINE L1 -5353 927 777 434 303 0 0 chr9 16792200 16792332 -125479112 - L1M4 LINE L1 -5595 685 554 254 257 110 68 chr9 16792449 16792686 -125478758 - L1M4 LINE L1 -6028 356 110 274 292 212 26 chr9 16792873 16792986 -125478458 + MIR SINE MIR 10 143 -119 220 298 184 18 chr9 16793178 16793292 -125478152 - MIR SINE MIR -128 134 2 1845 164 0 7 chr9 16793555 16793836 -125477608 + AluJo SINE Alu 3 281 -31 1554 187 56 4 chr9 16794409 16794677 -125476767 + AluJb SINE Alu 1 282 -30 1850 178 34 0 chr9 16794955 16795248 -125476196 - AluJo SINE Alu -7 305 3 906 232 60 45 chr9 16795307 16795643 -125475801 - MER74A LTR ERVL -63 495 155 220 340 21 10 chr9 16796107 16796204 -125475240 + L2 LINE L2 1741 1838 -1476 565 92 0 0 chr9 16796255 16796342 -125475102 - Alu SINE Alu 0 312 226 198 305 24 0 chr9 16796370 16796452 -125474992 + L2 LINE L2 1925 2008 -1306 212 399 101 4 chr9 16797024 16797252 -125474192 + L2 LINE L2 2808 3057 -215 2039 122 23 7 chr9 16797551 16797854 -125473590 - AluSx SINE Alu -4 308 1 261 0 0 0 chr9 16798279 16798308 -125473136 + (TA)n Simple_repeat Simple_repeat 1 29 0 2189 98 0 0 chr9 16798308 16798585 -125472859 - AluSp SINE Alu -7 306 30 292 296 58 47 chr9 16798889 16799061 -125472383 - MIR SINE MIR -49 213 40 494 257 41 35 chr9 16799165 16799336 -125472108 - MIR SINE MIR -55 207 36 423 252 204 7 chr9 16799379 16799526 -125471918 - MER5B DNA MER1_type -1 177 2 929 168 0 13 chr9 16800311 16800466 -125470978 + FAM SINE Alu 1 40 -9 1812 154 4 0 chr9 16800732 16801005 -125470439 - AluSx SINE Alu -37 275 2 488 207 35 41 chr9 16801038 16801066 -125470378 - Charlie1 DNA MER1_type 0 2761 2734 2253 88 10 0 chr9 16801066 16801361 -125470083 - AluSp SINE Alu -15 298 1 488 207 35 41 chr9 16801361 16801477 -125469967 - Charlie1 DNA MER1_type -27 2734 2618 2031 149 30 0 chr9 16802701 16803002 -125468442 + AluJb SINE Alu 2 311 -1 640 268 118 38 chr9 16803052 16803399 -125468045 + HAL1 LINE L1 1654 2028 -479 2311 80 10 0 chr9 16803399 16803699 -125467745 + AluY SINE Alu 1 303 -8 346 264 125 42 chr9 16803862 16804006 -125467438 + HAL1 LINE L1 2342 2497 -10 2105 132 7 0 chr9 16804028 16804323 -125467121 + AluSx SINE Alu 1 297 -15 2290 102 0 13 chr9 16804441 16804609 -125466835 - AluSx SINE Alu -11 301 137 2386 88 3 0 chr9 16804609 16804917 -125466527 - AluSp SINE Alu -4 309 1 2290 102 0 13 chr9 16804917 16805053 -125466391 - AluSx SINE Alu -175 137 1 1827 185 0 0 chr9 16805214 16805511 -125465933 - AluJo SINE Alu -15 297 1 320 360 50 14 chr9 16805687 16805826 -125465618 - MIR3 SINE MIR -7 201 58 1907 173 0 0 chr9 16806056 16806356 -125465088 + AluJo SINE Alu 1 300 -12 272 279 107 0 chr9 16807100 16807222 -125464222 - MER103 DNA DNA 0 166 32 345 151 151 23 chr9 16807423 16807509 -125463935 + FLAM_C SINE Alu 37 133 0 942 154 84 44 chr9 16807546 16807773 -125463671 + MER46A DNA MER2_type 1 236 0 302 234 86 16 chr9 16808849 16808977 -125462467 - L1M4 LINE L1 -855 5291 5155 2275 102 0 0 chr9 16809140 16809433 -125462011 - AluSq SINE Alu -20 293 1 1704 170 0 7 chr9 16809914 16810203 -125461241 - AluJb SINE Alu -24 288 2 1378 90 0 0 chr9 16811958 16812135 -125459309 - AluSg/x SINE Alu -3 309 133 306 0 0 0 chr9 16812236 16812270 -125459174 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 2152 115 10 3 chr9 16814840 16815145 -125456299 + AluSq SINE Alu 1 307 -6 264 210 170 62 chr9 16816217 16816441 -125455003 + L1MC5 LINE L1 7670 7917 -44 2236 100 3 10 chr9 16816583 16816884 -125454560 + AluSp SINE Alu 3 301 -12 1830 128 153 8 chr9 16816885 16817276 -125454168 - Tigger4(Zombi) DNA MER2_type -392 2339 1892 28 29 0 0 chr9 16819378 16819413 -125452031 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr9 16819677 16819701 -125451743 + (A)n Simple_repeat Simple_repeat 1 24 0 2026 148 23 0 chr9 16822370 16822675 -125448769 + AluSx SINE Alu 1 312 0 340 257 44 26 chr9 16823700 16823813 -125447631 - MIR3 SINE MIR -9 199 85 349 248 120 8 chr9 16824178 16824311 -125447133 + L1MC/D LINE L1 5547 5694 -2114 1052 141 22 0 chr9 16825962 16826146 -125445298 - L1MA8 LINE L1 -10 6281 6094 21 57 0 0 chr9 16826512 16826547 -125444897 + AT_rich Low_complexity Low_complexity 1 35 0 1656 145 54 14 chr9 16826601 16826897 -125444547 + AluJo SINE Alu 1 308 -4 1948 152 13 3 chr9 16829384 16829687 -125441757 + AluSx SINE Alu 1 306 -6 255 267 57 48 chr9 16829904 16830009 -125441435 + MER5B DNA MER1_type 68 173 -5 1898 132 42 17 chr9 16830155 16830443 -125441001 + AluSg SINE Alu 1 295 -15 200 324 42 0 chr9 16832300 16832371 -125439073 + L2 LINE L2 3169 3242 -71 623 147 0 0 chr9 16832492 16832587 -125438857 + AluSg SINE Alu 37 131 -179 2241 108 0 40 chr9 16832590 16832915 -125438529 + AluSx SINE Alu 1 312 0 1115 194 61 68 chr9 16832945 16833061 -125438383 + AluJo SINE Alu 14 129 -183 2186 111 3 35 chr9 16833061 16833196 -125438248 + AluSx SINE Alu 1 139 -173 1996 128 30 7 chr9 16833196 16833500 -125437944 + AluSx SINE Alu 1 311 -1 2186 111 3 35 chr9 16833500 16833679 -125437765 + AluSx SINE Alu 139 305 -7 1115 194 61 68 chr9 16833679 16833840 -125437604 + AluJo SINE Alu 129 289 -23 351 225 106 56 chr9 16834367 16834509 -125436935 - MIR SINE MIR -1 261 113 393 295 124 60 chr9 16835386 16835526 -125435918 - MIR SINE MIR -12 250 90 2272 100 3 0 chr9 16835526 16835827 -125435617 + AluSp SINE Alu 1 302 -11 393 295 124 60 chr9 16835827 16835903 -125435541 - MIR SINE MIR -172 90 20 285 217 48 48 chr9 16835959 16836042 -125435402 - MIR SINE MIR -110 152 70 561 234 72 51 chr9 16836551 16836670 -125434774 + MLT1E LTR MaLR 108 264 -362 2133 120 0 3 chr9 16836670 16836970 -125434474 + AluSg SINE Alu 1 299 -11 561 234 72 51 chr9 16836970 16837040 -125434404 + MLT1E LTR MaLR 264 331 -295 383 310 9 0 chr9 16837711 16837827 -125433617 - MIR SINE MIR -36 226 110 735 112 0 0 chr9 16837838 16837936 -125433508 + L1P LINE L1 1 98 -6048 * 33317 60 7 3 chr9 16837934 16842207 -125429237 + L1P LINE L1 847 5138 -1008 823 135 16 0 chr9 16843243 16843369 -125428075 - AluJo/FRAM SINE Alu -6 306 179 444 129 99 59 chr9 16843365 16843466 -125427978 + AluJb SINE Alu 198 302 -10 * 2035 126 0 23 chr9 16843571 16843881 -125427563 + AluSx SINE Alu 5 307 -5 180 321 149 30 chr9 16843981 16844115 -125427329 - L2 LINE L2 -7 3265 3116 2100 125 3 10 chr9 16844303 16844614 -125426830 + AluSg SINE Alu 1 309 -1 974 70 0 0 chr9 16844879 16844994 -125426450 + AluY SINE Alu 21 135 -176 2359 68 3 0 chr9 16844994 16845286 -125426158 + AluY SINE Alu 1 293 -18 2234 117 3 3 chr9 16845580 16845887 -125425557 + AluSq SINE Alu 1 307 -6 417 55 55 0 chr9 16846597 16846652 -125424792 + L1MB2 LINE L1 6068 6125 -46 2498 82 0 0 chr9 16846656 16846960 -125424484 + AluSx SINE Alu 2 305 -7 1568 210 49 10 chr9 16847201 16847795 -125423649 + MER82 DNA MER2_type 15 653 0 368 274 0 0 chr9 16847821 16847905 -125423539 - Tigger5 DNA MER2_type 0 2323 2240 231 156 16 156 chr9 16847920 16847960 -125423484 - Tigger5 DNA MER2_type -311 55 11 1986 119 91 26 chr9 16847960 16848312 -125423132 - THE1C LTR MaLR 0 375 1 10134 120 68 8 chr9 16848312 16849803 -125421641 - THE1C-int LTR MaLR 0 1580 1 1897 139 85 26 chr9 16849805 16850157 -125421287 - THE1C LTR MaLR -2 373 1 231 156 16 156 chr9 16850157 16850176 -125421268 - Tigger5 DNA MER2_type -355 11 1 2281 107 7 0 chr9 16850539 16850848 -125420596 + AluSp SINE Alu 1 311 -2 336 263 184 13 chr9 16851198 16851350 -125420094 + HAL1 LINE L1 2 179 -2328 267 250 28 0 chr9 16851358 16851430 -125420014 + HAL1 LINE L1 241 314 -2193 21 0 0 0 chr9 16851473 16851494 -125419950 + AT_rich Low_complexity Low_complexity 1 21 0 4104 201 94 14 chr9 16851615 16852562 -125418882 - Tigger6a DNA MER2_type -59 1024 2 2505 169 88 56 chr9 16853082 16853580 -125417864 + L1MB8 LINE L1 5395 5920 -258 2346 90 0 10 chr9 16853580 16853879 -125417565 - AluSg SINE Alu -14 296 1 2505 169 88 56 chr9 16853879 16854025 -125417419 + L1MB8 LINE L1 5920 6060 -118 2063 133 0 19 chr9 16854382 16854698 -125416746 + AluSx SINE Alu 1 310 -2 332 265 94 17 chr9 16855291 16855408 -125416036 - MIR3 SINE MIR -17 191 66 2208 110 0 7 chr9 16855846 16856146 -125415298 + AluSx SINE Alu 1 298 -14 30 0 0 0 chr9 16856314 16856344 -125415100 + AT_rich Low_complexity Low_complexity 1 30 0 2099 98 3 20 chr9 16856439 16856736 -125414708 + AluY SINE Alu 1 292 -19 524 236 91 30 chr9 16857270 16857435 -125414009 - MIR SINE MIR -35 227 53 314 239 177 0 chr9 16857527 16857640 -125413804 - L2 LINE L2 -5 3308 3176 353 268 43 73 chr9 16857830 16857994 -125413450 - L2 LINE L2 -472 2842 2684 490 163 139 54 chr9 16857997 16858095 -125413349 + MER2 DNA MER2_type 1 114 -231 243 0 0 0 chr9 16858095 16858122 -125413322 + (TA)n Simple_repeat Simple_repeat 2 28 0 490 163 139 54 chr9 16858122 16858152 -125413292 + MER2 DNA MER2_type 114 140 -205 1664 123 67 21 chr9 16858153 16858437 -125413007 + MER1B DNA MER1_type 3 299 -40 1179 159 48 5 chr9 16858441 16858648 -125412796 + MER2 DNA MER2_type 130 345 0 692 187 15 60 chr9 16858693 16858827 -125412617 - FLAM_A SINE Alu -5 128 1 297 273 71 71 chr9 16858876 16859030 -125412414 - L2 LINE L2 -749 2565 2412 2129 134 3 0 chr9 16859339 16859646 -125411798 + AluSx SINE Alu 1 308 -4 1323 169 54 65 chr9 16859649 16859928 -125411516 + AluJo SINE Alu 21 296 -16 2189 127 0 0 chr9 16860000 16860299 -125411145 - AluSg SINE Alu -11 299 1 2204 69 0 4 chr9 16860737 16861013 -125410431 + AluY SINE Alu 28 302 -9 717 226 37 47 chr9 16861101 16861214 -125410230 - MER5A DNA MER1_type 0 189 77 1620 158 90 0 chr9 16861214 16861492 -125409952 - AluJb SINE Alu -9 303 1 717 226 37 47 chr9 16861492 16861568 -125409876 - MER5A DNA MER1_type -112 77 2 561 218 259 14 chr9 16861788 16862008 -125409436 + L1MB8 LINE L1 5904 6177 -1 21 0 0 0 chr9 16862909 16862930 -125408514 + AT_rich Low_complexity Low_complexity 1 21 0 745 229 201 14 chr9 16863009 16863293 -125408151 + MER46C DNA MER2_type 1 337 -1 572 254 113 11 chr9 16863435 16863620 -125407824 - MER113 DNA MER1_type? -86 435 232 1903 148 34 0 chr9 16863623 16863914 -125407530 + AluSg SINE Alu 1 301 -9 194 250 167 12 chr9 16865691 16865775 -125405669 - MIR3 SINE MIR -27 181 85 200 186 0 51 chr9 16866794 16866853 -125404591 + G-rich Low_complexity Low_complexity 4 59 0 471 245 231 0 chr9 16869027 16869174 -125402270 + MER5A DNA MER1_type 9 189 0 272 118 0 20 chr9 16869577 16869628 -125401816 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 406 211 57 52 chr9 16869874 16870024 -125401420 - MIR SINE MIR -46 162 18 2203 93 0 3 chr9 16870409 16870699 -125400745 + AluSg SINE Alu 2 290 -20 2112 125 0 35 chr9 16871482 16871795 -125399649 - AluSx SINE Alu -10 302 1 2212 118 0 7 chr9 16871795 16872099 -125399345 - AluSx SINE Alu -6 306 5 458 248 70 13 chr9 16872527 16872684 -125398760 + MER103 DNA DNA 1 166 0 586 269 76 0 chr9 16872952 16873123 -125398321 + MIR SINE MIR 21 204 -58 1575 192 0 28 chr9 16873323 16873686 -125397758 - AluJo SINE Alu 0 312 1 5304 126 66 7 chr9 16873713 16874573 -125396871 - L1MC1 LINE L1 0 6333 5423 1669 151 43 0 chr9 16874857 16875136 -125396308 - AluJo SINE Alu -19 293 3 1428 218 15 206 chr9 16875175 16875538 -125395906 - L1MD3 LINE L1 0 7995 7493 829 110 17 0 chr9 16875538 16875656 -125395788 - AluSg/x SINE Alu -5 307 188 1428 218 15 206 chr9 16875656 16875919 -125395525 - L1MD3 LINE L1 -502 7493 7182 246 226 11 118 chr9 16875919 16876012 -125395432 - MLT1F1 LTR MaLR -450 117 35 318 133 33 0 chr9 16876014 16876074 -125395370 - L1MD3 LINE L1 -877 7118 7057 1117 184 88 102 chr9 16876541 16876896 -125394548 - Charlie2a DNA MER1_type -53 2809 2451 2300 112 0 0 chr9 16876896 16877192 -125394252 + AluSx SINE Alu 1 296 -16 1117 184 88 102 chr9 16877192 16877534 -125393910 - Charlie2a DNA MER1_type -411 2451 986 626 175 100 33 chr9 16877534 16877654 -125393790 - FLAM_A SINE Alu -7 135 8 234 229 42 0 chr9 16877723 16877771 -125393673 - MER2 DNA MER2_type 0 345 296 473 160 24 0 chr9 16877878 16877966 -125393478 - MER2 DNA MER2_type -150 89 1 720 238 28 14 chr9 16877970 16878184 -125393260 - Charlie2a DNA MER1_type -1974 888 672 867 186 17 47 chr9 16878184 16878356 -125393088 + FRAM SINE Alu 1 159 -17 272 292 115 10 chr9 16878386 16878482 -125392962 - Charlie2a DNA MER1_type -2230 632 527 3994 195 51 56 chr9 16879483 16880466 -125390978 - L1MD1 LINE L1 -12 6230 5253 189 0 0 0 chr9 16880506 16880527 -125390917 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1854 100 77 0 chr9 16880527 16880787 -125390657 - AluSx SINE Alu -32 280 1 3641 123 10 0 chr9 16881141 16881646 -125389798 + MER75 DNA T2_type 5 514 0 1536 252 28 9 chr9 16881722 16882151 -125389293 - L1MD1 LINE L1 -858 5288 4852 1770 194 9 13 chr9 16882188 16882503 -125388941 - 7SLRNA srpRNA srpRNA -6 314 1 186 167 44 9 chr9 16882531 16882645 -125388799 + (TA)n Simple_repeat Simple_repeat 1 118 0 792 216 92 79 chr9 16882661 16883040 -125388404 - L1MD1 LINE L1 -1564 4582 4199 528 264 17 6 chr9 16883043 16883217 -125388227 - L1MD1 LINE L1 -3357 2789 2614 772 176 0 29 chr9 16883223 16883359 -125388085 - FLAM_C SINE Alu -1 132 1 22 0 0 0 chr9 16883374 16883396 -125388048 + GC_rich Low_complexity Low_complexity 1 22 0 592 105 0 23 chr9 16884309 16884395 -125387049 - AluSg/x SINE Alu -21 289 206 968 90 0 8 chr9 16884495 16884628 -125386816 + AluSg/x SINE Alu 171 302 -10 1189 285 60 70 chr9 16884852 16885470 -125385974 - MER89-int LTR ERV1 -426 4221 3610 658 158 71 24 chr9 16885473 16885600 -125385844 + FLAM_C SINE Alu 1 133 0 2251 80 0 11 chr9 16885633 16885942 -125385502 + AluY SINE Alu 1 306 0 322 341 71 0 chr9 16885966 16886092 -125385352 - MER89-int LTR ERV1 -1044 3603 3469 1125 239 64 98 chr9 16886102 16886663 -125384781 - MER77 LTR ERV1 -8 597 138 1724 174 0 27 chr9 16886770 16887105 -125384339 + AluJb SINE Alu 1 312 0 2420 90 0 19 chr9 16887112 16887424 -125384020 + AluSx SINE Alu 1 306 -6 331 208 75 38 chr9 16887510 16887616 -125383828 - MER89-int LTR ERV1 -1218 3429 3320 841 253 64 67 chr9 16887665 16888053 -125383391 - MER89-int LTR ERV1 -1319 3328 2942 347 316 101 6 chr9 16888109 16888277 -125383167 - MER89-int LTR ERV1 -1640 5161 4978 26 0 0 0 chr9 16888680 16888706 -125382738 + AT_rich Low_complexity Low_complexity 1 26 0 550 118 18 18 chr9 16888734 16888844 -125382600 + L1MDb LINE L1 1081 1190 -5219 477 195 20 141 chr9 16888996 16889246 -125382198 - LTR50 LTR ERVL 0 795 556 2153 84 27 3 chr9 16889262 16889560 -125381884 - AluSq SINE Alu -8 305 1 343 298 33 33 chr9 16889859 16890010 -125381434 - LTR41 LTR ERVL -622 151 1 24 53 0 0 chr9 16890032 16890070 -125381374 + AT_rich Low_complexity Low_complexity 1 38 0 2227 100 0 7 chr9 16890098 16890397 -125381047 - AluSx SINE Alu -15 297 1 25982 50 3 62 chr9 16890577 16894509 -125376935 + L1PA5 LINE L1 2264 6152 -2 269 291 12 58 chr9 16894524 16894610 -125376834 - MIR SINE MIR -158 104 23 633 238 181 5 chr9 16895246 16895456 -125375988 - MIR SINE MIR -15 247 1 402 343 22 15 chr9 16895585 16895719 -125375725 - MIR3 SINE MIR -21 187 53 2434 51 0 3 chr9 16895876 16896171 -125375273 + AluY SINE Alu 2 295 -16 222 274 113 48 chr9 16896482 16896606 -125374838 - L2 LINE L2 0 3313 3182 414 0 0 0 chr9 16897879 16897925 -125373519 + (CA)n Simple_repeat Simple_repeat 2 47 0 28 0 0 0 chr9 16898483 16898511 -125372933 + AT_rich Low_complexity Low_complexity 1 28 0 1025 144 0 0 chr9 16898511 16898664 -125372780 - AluJb SINE Alu 0 312 160 2577 43 0 7 chr9 16898683 16898985 -125372459 + AluY SINE Alu 1 300 -11 240 381 48 0 chr9 16899101 16899206 -125372238 - L2 LINE L2 0 3272 3163 213 312 144 8 chr9 16899355 16899480 -125371964 - L2 LINE L2 -447 2867 2726 22 35 0 0 chr9 16900085 16900114 -125371330 + AT_rich Low_complexity Low_complexity 1 29 0 1383 44 12 0 chr9 16900674 16900834 -125370610 - L1PA7 LINE L1 -2 6152 5991 190 363 26 18 chr9 16900964 16901077 -125370367 + L2 LINE L2 2694 2807 -507 712 161 113 32 chr9 16901283 16901407 -125370037 - AluJb SINE Alu -177 135 2 204 228 18 18 chr9 16901408 16901465 -125369979 - MIR SINE MIR -6 256 200 252 0 0 0 chr9 16901466 16901493 -125369951 + MSTD LTR MaLR 1 27 -369 907 107 119 36 chr9 16901494 16901662 -125369782 + Tigger1 DNA MER2_type 421 602 -1816 459 217 94 29 chr9 16901662 16901800 -125369644 + AluSg/x SINE Alu 129 275 -35 3123 144 52 8 chr9 16901800 16902334 -125369110 + Tigger1 DNA MER2_type 622 1179 -1239 2355 104 0 0 chr9 16902337 16902634 -125368810 + AluSx SINE Alu 1 297 -15 2190 103 14 0 chr9 16902638 16902929 -125368515 + AluY SINE Alu 3 297 -14 24 0 0 0 chr9 16902929 16902953 -125368491 + AT_rich Low_complexity Low_complexity 1 24 0 1072 90 7 0 chr9 16902956 16903101 -125368343 + Tigger1 DNA MER2_type 1465 1610 -808 1841 143 0 0 chr9 16903139 16903404 -125368040 + AluSx SINE Alu 43 307 -5 1453 175 7 42 chr9 16903415 16903700 -125367744 - AluJo SINE Alu -29 283 9 1956 89 13 73 chr9 16903708 16903945 -125367499 + Tigger1 DNA MER2_type 1607 1857 -561 7080 79 42 8 chr9 16903945 16904977 -125366467 - L1PA10 LINE L1 0 6168 5133 829 122 0 0 chr9 16904977 16905084 -125366360 - U6 snRNA snRNA 0 107 1 1956 89 13 73 chr9 16905084 16905158 -125366286 + Tigger1 DNA MER2_type 1855 1900 -518 937 192 0 0 chr9 16905161 16905328 -125366116 - AluJb SINE Alu -6 306 140 1743 179 0 3 chr9 16905329 16905614 -125365830 - AluJb SINE Alu -20 292 9 1015 152 0 0 chr9 16905621 16905772 -125365672 + Tigger1 DNA MER2_type 2268 2418 0 2100 169 68 3 chr9 16905774 16906159 -125365285 + L1MC1 LINE L1 5924 6333 0 1967 161 3 0 chr9 16906298 16906603 -125364841 + AluSp SINE Alu 1 306 -7 728 194 0 16 chr9 16906606 16906735 -125364709 - FLAM_A SINE Alu -6 127 1 232 216 149 14 chr9 16906805 16906879 -125364565 + MLT1L LTR MaLR 2 85 -530 327 197 16 0 chr9 16906951 16907012 -125364432 + MLT1J LTR MaLR 112 173 -338 351 259 47 59 chr9 16907029 16907186 -125364258 + MLT1L LTR MaLR 439 593 -22 632 186 107 79 chr9 16907186 16907363 -125364081 + MER63A DNA MER1_type 1 182 -28 2322 102 7 0 chr9 16907642 16907817 -125363627 - AluSc SINE Alu -3 306 127 212 31 62 0 chr9 16907817 16907849 -125363595 + T-rich Low_complexity Low_complexity 2 35 0 2322 102 7 0 chr9 16907849 16907977 -125363467 - AluSc SINE Alu -182 127 1 1600 199 16 7 chr9 16908023 16908330 -125363114 + AluJb SINE Alu 1 310 -2 1040 248 51 0 chr9 16908346 16908600 -125362844 + MER110 LTR ERV1 225 491 0 402 297 61 47 chr9 16908600 16908812 -125362632 - L1ME LINE L1 -513 5608 5394 2406 61 0 3 chr9 16909481 16909810 -125361634 - AluY SINE Alu 0 328 1 1561 203 0 0 chr9 16910573 16910859 -125360585 + AluJo SINE Alu 5 290 -22 396 184 133 63 chr9 16910935 16911028 -125360416 - L1ME LINE L1 -1306 4840 4730 1805 182 0 7 chr9 16911028 16911336 -125360108 - AluJb SINE Alu -6 306 1 396 184 133 63 chr9 16911336 16911400 -125360044 - L1ME LINE L1 -1416 4730 4672 476 248 30 23 chr9 16911413 16911546 -125359898 - L2 LINE L2 0 3313 3180 910 188 134 5 chr9 16911550 16911774 -125359670 + MER110 LTR ERV1 1 253 -238 28 29 0 0 chr9 16912311 16912346 -125359098 + AT_rich Low_complexity Low_complexity 1 35 0 689 160 61 38 chr9 16912350 16912481 -125358963 - AluJo SINE Alu -176 136 3 2512 51 0 0 chr9 16912493 16912788 -125358656 - AluY SINE Alu -16 295 1 634 175 0 33 chr9 16912927 16913047 -125358397 - AluSg/x SINE Alu 0 309 194 1539 153 14 37 chr9 16913114 16913409 -125358035 + AluJb SINE Alu 1 288 -24 180 200 0 0 chr9 16913493 16913538 -125357906 + (TA)n Simple_repeat Simple_repeat 2 46 0 24 53 0 0 chr9 16913959 16913997 -125357447 + AT_rich Low_complexity Low_complexity 1 38 0 2458 50 0 0 chr9 16913997 16914329 -125357115 + AluY SINE Alu 1 332 0 2144 103 0 7 chr9 16914575 16914892 -125356552 + AluSg SINE Alu 1 315 0 298 130 0 37 chr9 16915087 16915141 -125356303 - Alu SINE Alu 0 302 251 9404 85 11 7 chr9 16915143 16916444 -125355000 - L1P LINE L1 -3993 2153 847 735 112 0 0 chr9 16916442 16916540 -125354904 - L1P LINE L1 -6048 98 1 * 383 310 9 0 chr9 16916551 16916667 -125354777 + MIR SINE MIR 110 226 -36 561 234 72 51 chr9 16917338 16917408 -125354036 - MLT1E LTR MaLR -295 331 264 2133 120 0 3 chr9 16917408 16917708 -125353736 - AluSg SINE Alu -11 299 1 561 234 72 51 chr9 16917708 16917827 -125353617 - MLT1E LTR MaLR -362 264 108 285 217 48 48 chr9 16918336 16918419 -125353025 + MIR SINE MIR 70 152 -110 393 295 124 60 chr9 16918475 16918551 -125352893 + MIR SINE MIR 20 90 -172 2272 100 3 0 chr9 16918551 16918852 -125352592 - AluSp SINE Alu -11 302 1 393 295 124 60 chr9 16918852 16918992 -125352452 + MIR SINE MIR 90 250 -12 619 205 186 0 chr9 16920173 16920388 -125351056 + MER5C DNA MER1_type 70 324 0 1276 118 0 27 chr9 16920501 16920687 -125350757 - AluSg/x SINE Alu -9 303 123 689 171 16 31 chr9 16920768 16920897 -125350547 - FLAM_A SINE Alu -6 127 1 4112 194 37 32 chr9 16920967 16921691 -125349753 - L1MB7 LINE L1 -209 5975 5256 1917 161 0 3 chr9 16921691 16921995 -125349449 + AluSx SINE Alu 1 303 -9 4112 194 37 32 chr9 16921995 16922443 -125349001 - L1MB7 LINE L1 -928 5256 4812 1970 114 18 0 chr9 16922443 16922716 -125348728 - AluSg SINE Alu -14 296 19 4112 194 37 32 chr9 16922716 16923075 -125348369 - L1MB7 LINE L1 -1372 4812 4432 1893 155 10 0 chr9 16923075 16923366 -125348078 - AluJo SINE Alu -18 294 1 4112 194 37 32 chr9 16923366 16923442 -125348002 - L1MB7 LINE L1 -1752 4432 4358 2174 110 7 7 chr9 16923536 16923837 -125347607 - AluSp SINE Alu -12 301 1 6481 45 4 32 chr9 16923863 16924699 -125346745 - SVA Other Other 0 1386 575 1705 163 4 4 chr9 16924802 16925079 -125346365 - AluSc SINE Alu -32 277 1 2332 119 3 0 chr9 16925184 16925496 -125345948 - AluSq SINE Alu 0 313 1 224 217 0 0 chr9 16925502 16925548 -125345896 - L2 LINE L2 0 3272 3227 331 272 147 15 chr9 16925822 16925958 -125345486 - MIR SINE MIR -50 212 59 210 191 24 0 chr9 16926135 16926177 -125345267 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1901 264 121 63 chr9 16927175 16928102 -125343342 + HAL1 LINE L1 64 936 -1571 2009 143 3 3 chr9 16928102 16928409 -125343035 + AluSq SINE Alu 1 307 -6 1901 264 121 63 chr9 16928409 16928531 -125342913 + HAL1 LINE L1 936 1050 -1457 2494 62 0 0 chr9 16928531 16928839 -125342605 - AluY SINE Alu -3 308 1 1901 264 121 63 chr9 16928839 16928916 -125342528 + HAL1 LINE L1 1050 1256 -1251 611 255 205 20 chr9 16928939 16929139 -125342305 - MIR SINE MIR -25 237 1 226 206 234 65 chr9 16929147 16929331 -125342113 + HAL1 LINE L1 1266 1480 -1027 1799 121 34 1 chr9 16929347 16929803 -125341641 + L1P4 LINE L1 5026 5492 -669 2684 43 0 0 chr9 16929803 16930105 -125341339 + AluY SINE Alu 1 302 -9 5298 195 37 33 chr9 16930107 16930421 -125341023 + L1MB7 LINE L1 4119 4430 -1754 1893 155 10 0 chr9 16930421 16930712 -125340732 + AluJo SINE Alu 1 294 -18 5298 195 37 33 chr9 16930712 16931071 -125340373 + L1MB7 LINE L1 4430 4786 -1398 1979 113 18 0 chr9 16931071 16931345 -125340099 + AluSg SINE Alu 19 297 -13 5298 195 37 33 chr9 16931345 16931793 -125339651 + L1MB7 LINE L1 4786 5231 -953 1834 168 3 3 chr9 16931793 16932096 -125339348 - AluSx SINE Alu -9 303 1 5298 195 37 33 chr9 16932096 16932779 -125338665 + L1MB7 LINE L1 5231 5933 -251 7895 36 0 2 chr9 16932880 16934427 -125337017 + L1PA3 LINE L1 4609 6154 -1 46 54 0 0 chr9 16934448 16934522 -125336922 + AT_rich Low_complexity Low_complexity 1 74 0 235 273 80 57 chr9 16934683 16934859 -125336585 - HAL1 LINE L1 -1963 544 365 2369 156 38 7 chr9 16934881 16935298 -125336146 - L1MB8 LINE L1 -11 6167 5738 1103 148 28 12 chr9 16935298 16935518 -125335926 - MLT2A2 LTR ERVL 0 453 295 456 189 11 0 chr9 16935524 16935614 -125335830 - L1MB8 LINE L1 -782 5392 5302 1850 116 30 7 chr9 16935642 16935944 -125335500 - MLT2A2 LTR ERVL -144 309 1 2155 172 11 18 chr9 16935946 16936388 -125335056 - L1M4 LINE L1 -438 5740 5302 2041 154 0 3 chr9 16936706 16937011 -125334433 + AluJb SINE Alu 1 304 -8 2319 119 0 0 chr9 16937213 16937525 -125333919 + AluSx SINE Alu 1 312 0 202 292 150 0 chr9 16937851 16937964 -125333480 - MIR SINE MIR -56 206 77 956 35 28 14 chr9 16938252 16938393 -125333051 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 789 157 0 0 chr9 16938400 16938515 -125332929 - FLAM_A SINE Alu -18 115 1 235 71 48 0 chr9 16939140 16939182 -125332262 + CT-rich Low_complexity Low_complexity 1 44 0 1013 186 0 17 chr9 16939685 16939862 -125331582 + FAM SINE Alu 1 174 -1 291 282 13 0 chr9 16940067 16940145 -125331299 + L2 LINE L2 3221 3299 -14 1604 36 5 0 chr9 16940377 16940569 -125330875 - L1PA3 LINE L1 -2 6153 5961 194 345 134 8 chr9 16942156 16942275 -125329169 - MIR3 SINE MIR -54 154 21 30221 38 5 0 chr9 16942653 16947296 -125324148 - L1PA4 LINE L1 0 6155 1497 2122 116 3 0 chr9 16947904 16948189 -125323255 - AluSg SINE Alu -24 286 1 1350 253 122 78 chr9 16948189 16948573 -125322871 - HAL1 LINE L1 -1424 1083 717 2149 118 48 25 chr9 16948573 16948929 -125322515 - THE1B LTR MaLR 0 364 1 1350 253 122 78 chr9 16948929 16949031 -125322413 - HAL1 LINE L1 -1790 717 621 1654 178 10 27 chr9 16949031 16949323 -125322121 + AluJo SINE Alu 1 287 -25 1350 253 122 78 chr9 16949323 16949778 -125321666 - HAL1 LINE L1 -1886 621 100 308 282 10 0 chr9 16949828 16949931 -125321513 - L1MC4 LINE L1 -15 8027 7924 221 235 0 0 chr9 16949934 16949985 -125321459 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 239 258 0 0 chr9 16949997 16950059 -125321385 - L1MC4 LINE L1 -155 7887 7826 2766 237 23 34 chr9 16950094 16950149 -125321295 - L1ME2 LINE L1 -13 6151 6097 1923 160 7 0 chr9 16950149 16950436 -125321008 - AluSx SINE Alu -11 301 13 2766 237 23 34 chr9 16950436 16951214 -125320230 - L1ME2 LINE L1 -67 6097 5327 281 255 49 29 chr9 16951214 16951316 -125320128 + MIR3 SINE MIR 89 192 -16 388 220 105 55 chr9 16951366 16951531 -125319913 + MER39 LTR ERV1 4 165 -377 * 1448 169 116 11 chr9 16951526 16951888 -125319556 + MER39 LTR ERV1 308 707 0 2353 63 0 10 chr9 16951978 16952278 -125319166 + AluSg1 SINE Alu 2 298 -11 3485 91 40 22 chr9 16952361 16952715 -125318729 - L1PB1 LINE L1 -1 6150 5781 2336 74 17 0 chr9 16952715 16953011 -125318433 - AluSc SINE Alu -8 301 1 3485 91 40 22 chr9 16953011 16953204 -125318240 - L1PB1 LINE L1 -370 5781 5593 * 10141 67 4 0 chr9 16953203 16955308 -125316136 - L1PA7 LINE L1 0 6154 4047 2403 147 18 20 chr9 16955308 16956148 -125315296 - L1PB1 LINE L1 -551 5600 4769 949 173 85 8 chr9 16956212 16956460 -125314984 + L1ME3A LINE L1 5686 5952 -218 2725 126 36 2 chr9 16956841 16957255 -125314189 + MSTA LTR MaLR 1 428 0 490 284 154 47 chr9 16957255 16957759 -125313685 - HAL1 LINE L1 -1633 874 263 1860 185 22 16 chr9 16957759 16958122 -125313322 + MLT1A1 LTR MaLR 1 365 0 490 284 154 47 chr9 16958122 16958364 -125313080 - HAL1 LINE L1 -2244 263 48 978 227 38 0 chr9 16958940 16959178 -125312266 - L1M4 LINE L1 -487 5691 5445 1285 120 34 4 chr9 16959178 16959412 -125312032 - MER6 DNA MER2_type -4 861 621 2339 87 3 7 chr9 16959429 16959738 -125311706 - AluSg SINE Alu 0 310 3 285 133 0 3 chr9 16959741 16959799 -125311645 - L1M4 LINE L1 -745 5429 5373 * 1474 218 31 6 chr9 16959798 16960151 -125311293 - L1M4 LINE L1 -5595 947 586 915 236 3 76 chr9 16960168 16960498 -125310946 - L1M4 LINE L1 -6202 340 35 410 286 9 0 chr9 16960649 16960754 -125310690 - HAL1 LINE L1 -1667 840 735 361 260 174 21 chr9 16960778 16961151 -125310293 + L1M4 LINE L1 3430 3859 -2287 1703 174 13 7 chr9 16961695 16961861 -125309583 - AluJb SINE Alu -11 301 131 2279 114 0 3 chr9 16961861 16962169 -125309275 - AluSx SINE Alu -5 307 1 1703 174 13 7 chr9 16962169 16962301 -125309143 - AluJb SINE Alu -181 131 1 36 53 0 0 chr9 16962339 16962396 -125309048 + AT_rich Low_complexity Low_complexity 1 57 0 1326 105 0 20 chr9 16962758 16962958 -125308486 - MSTA LTR MaLR 0 428 233 1934 123 15 9 chr9 16962959 16963291 -125308153 - L1P3 LINE L1 -4844 1617 1284 1290 76 0 0 chr9 16963297 16963455 -125307989 - AluY SINE Alu -15 296 139 794 190 6 49 chr9 16963579 16963742 -125307702 - AluJb SINE Alu -20 292 137 183 42 0 0 chr9 16963744 16963768 -125307676 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2329 63 0 3 chr9 16963768 16964052 -125307392 - AluY SINE Alu -28 283 1 6819 136 27 32 chr9 16964062 16965338 -125306106 - L1P3 LINE L1 -5183 1278 10 12111 137 26 22 chr9 16965356 16967342 -125304102 + Tigger1 DNA MER2_type 221 2218 -200 2087 139 0 3 chr9 16967342 16967643 -125303801 - AluSx SINE Alu -12 300 1 12111 137 26 22 chr9 16967643 16967844 -125303600 + Tigger1 DNA MER2_type 2218 2417 -1 4865 114 6 1 chr9 16967960 16968670 -125302774 + L1PA13 LINE L1 5447 6159 -4 288 0 0 0 chr9 16969852 16969884 -125301560 + (CA)n Simple_repeat Simple_repeat 1 32 0 30699 61 4 1 chr9 16970650 16974796 -125296648 - L1P LINE L1 -1980 4166 7 2311 105 0 7 chr9 16976147 16976453 -125294991 - AluSx SINE Alu -8 304 1 2104 79 0 34 chr9 16976461 16976753 -125294691 - AluY SINE Alu -3 308 27 6552 73 21 12 chr9 16976753 16977826 -125293618 - L1PA10 LINE L1 -14 6154 5074 1515 186 76 3 chr9 16978402 16978693 -125292751 - AluJo SINE Alu 0 312 1 2184 93 6 35 chr9 16978894 16979207 -125292237 + AluSg SINE Alu 1 304 -6 1524 137 90 13 chr9 16979430 16979730 -125291714 - MER44D DNA MER2_type -10 599 7 344 296 53 8 chr9 16979746 16979878 -125291566 - L1ME LINE L1 -400 5762 5625 2002 151 0 3 chr9 16980956 16981261 -125290183 - AluJb SINE Alu -8 304 1 232 319 35 35 chr9 16981297 16981374 -125290070 - L1ME LINE L1 -335 5835 5756 2573 145 31 0 chr9 16981374 16981789 -125289655 - MSTC LTR MaLR 0 428 1 232 319 35 35 chr9 16981789 16981852 -125289592 - L1ME LINE L1 -413 5757 5695 244 239 220 37 chr9 16981896 16982114 -125289330 - L1ME LINE L1 -577 5585 5328 1033 195 5 15 chr9 16982214 16982414 -125289030 + AluJb SINE Alu 97 294 -18 2276 98 0 22 chr9 16982462 16982779 -125288665 - AluSx SINE Alu -2 310 1 873 150 0 0 chr9 16982976 16983116 -125288328 + FLAM_C SINE Alu 1 140 -3 21 57 0 0 chr9 16983292 16983327 -125288117 + AT_rich Low_complexity Low_complexity 1 35 0 2224 115 0 13 chr9 16983328 16983640 -125287804 - AluSg SINE Alu -2 308 1 1045 84 0 56 chr9 16983641 16983784 -125287660 - AluSq/x SINE Alu -177 135 1 200 279 0 0 chr9 16984005 16984048 -125287396 + MIR SINE MIR 88 130 -78 2028 121 6 32 chr9 16984355 16984669 -125286775 - AluJo SINE Alu -6 306 1 790 147 60 106 chr9 16984769 16984987 -125286457 + Charlie4 DNA MER1_type 1 208 -1753 2252 113 0 0 chr9 16985009 16985301 -125286143 + AluSx SINE Alu 5 296 -16 297 0 0 0 chr9 16985333 16985366 -125286078 + (TG)n Simple_repeat Simple_repeat 2 34 0 1658 184 3 17 chr9 16985399 16985693 -125285751 - AluJo SINE Alu -22 290 1 471 271 110 34 chr9 16986815 16987163 -125284281 - LTR33A LTR ERVL -13 510 84 1791 155 40 0 chr9 16987434 16987613 -125283831 - AluJb SINE Alu -4 308 111 387 0 0 0 chr9 16987613 16987656 -125283788 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1791 155 40 0 chr9 16987656 16987772 -125283672 - AluJb SINE Alu -201 111 1 23 0 0 0 chr9 16987922 16987945 -125283499 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 16988758 16988779 -125282665 + AT_rich Low_complexity Low_complexity 1 21 0 737 205 25 12 chr9 16988836 16989047 -125282397 - L1ME3A LINE L1 -160 6002 5774 22201 54 2 2 chr9 16989319 16992959 -125278485 - L1PA5 LINE L1 -7 6147 2508 43473 45 2 2 chr9 16993036 16998637 -125272807 + L1P1 LINE L1 1 5605 -550 323 344 40 20 chr9 16999692 16999843 -125271601 - MIR SINE MIR -56 206 53 302 248 10 69 chr9 17000036 17000137 -125271307 - MIR SINE MIR -167 95 1 1732 122 37 1 chr9 17000347 17000802 -125270642 + L1P4 LINE L1 5026 5492 -669 2521 56 0 0 chr9 17000802 17001104 -125270340 + AluY SINE Alu 1 302 -9 1159 154 27 23 chr9 17001106 17001366 -125270078 + L1ME4a LINE L1 4119 4379 -1767 778 146 0 0 chr9 17001367 17001497 -125269947 + AluSc SINE Alu 180 309 0 1548 50 0 0 chr9 17001843 17002023 -125269421 + AluY SINE Alu 121 300 -11 901 126 0 0 chr9 17002024 17002159 -125269285 - L1MA4 LINE L1 -384 5916 5782 646 196 0 0 chr9 17002203 17002315 -125269129 - FLAM_A SINE Alu -10 132 21 1094 134 6 0 chr9 17002332 17002504 -125268940 - L1MA4 LINE L1 -518 5785 5613 2155 111 3 3 chr9 17002504 17002828 -125268616 - pTR5 LTR ERV1 -2049 389 66 406 188 30 20 chr9 17002828 17002929 -125268515 - LTR30 LTR ERV1 -80 642 541 800 129 184 12 chr9 17002930 17003093 -125268351 - pTR5 LTR ERV1 -417 2021 1831 2160 105 0 10 chr9 17003381 17003685 -125267759 - AluY SINE Alu -10 301 1 1449 211 66 34 chr9 17004392 17004861 -125266583 + HAL1 LINE L1 1069 1552 -955 1351 206 3 41 chr9 17005037 17005092 -125266352 + L1ME4a LINE L1 4614 4670 -1476 2140 131 0 0 chr9 17005092 17005382 -125266062 + AluSx SINE Alu 1 290 -22 1351 206 3 41 chr9 17005382 17005670 -125265774 + L1ME4a LINE L1 4670 4944 -1202 278 148 0 0 chr9 17005687 17005741 -125265703 + Alu SINE Alu 247 300 -1 691 240 37 28 chr9 17005741 17005958 -125265486 + L1MB8 LINE L1 5960 6178 0 692 283 109 31 chr9 17006385 17007038 -125264406 + L1ME4a LINE L1 5215 5942 -179 25 51 0 0 chr9 17007152 17007191 -125264253 + AT_rich Low_complexity Low_complexity 1 39 0 243 88 0 0 chr9 17007210 17007244 -125264200 + (TA)n Simple_repeat Simple_repeat 1 34 0 1679 181 17 3 chr9 17007350 17007638 -125263806 - AluJb SINE Alu -20 292 1 2129 120 0 7 chr9 17007758 17008070 -125263374 + AluSx SINE Alu 1 312 0 9707 128 20 4 chr9 17008220 17009549 -125261895 + L1M1 LINE L1 1205 2562 -5003 276 30 0 0 chr9 17009549 17009582 -125261862 + (GA)n Simple_repeat Simple_repeat 1 33 0 9707 128 20 4 chr9 17009582 17009716 -125261728 + L1M1 LINE L1 2562 2692 -4873 379 365 76 0 chr9 17010476 17010621 -125260823 + L2 LINE L2 3117 3272 0 22 0 0 0 chr9 17010690 17010712 -125260732 + AT_rich Low_complexity Low_complexity 1 22 0 927 59 0 0 chr9 17010833 17010952 -125260492 - L1PA5 LINE L1 -7 6147 6029 430 303 197 67 chr9 17011053 17011591 -125259853 + L2 LINE L2 1706 2313 -1001 234 246 18 0 chr9 17011599 17011656 -125259788 - L2 LINE L2 0 3272 3215 196 289 42 127 chr9 17011806 17011881 -125259563 + L2 LINE L2 2424 2504 -810 234 91 0 0 chr9 17011881 17011914 -125259530 + (CAATC)n Simple_repeat Simple_repeat 3 35 0 196 289 42 127 chr9 17011914 17012098 -125259346 + L2 LINE L2 2504 2661 -653 707 211 40 7 chr9 17012141 17012293 -125259151 + MIR SINE MIR 99 255 -7 21 0 0 0 chr9 17013133 17013154 -125258290 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr9 17014032 17014071 -125257373 + AT_rich Low_complexity Low_complexity 1 39 0 1084 316 66 9 chr9 17014245 17014698 -125256746 + LTR33 LTR ERVL 23 501 -20 1744 124 25 0 chr9 17014815 17015089 -125256355 - Tigger1 DNA MER2_type -60 2358 2078 1026 158 37 23 chr9 17015123 17015338 -125256106 - L1MA4A LINE L1 -16 6287 6070 30 0 0 0 chr9 17015584 17015614 -125255830 + AT_rich Low_complexity Low_complexity 1 30 0 599 220 0 0 chr9 17018619 17018728 -125252716 + FLAM_A SINE Alu 14 122 -20 271 269 0 0 chr9 17019255 17019322 -125252122 + L2 LINE L2 2634 2700 -614 1240 156 60 39 chr9 17019330 17019457 -125251987 + L1MA9 LINE L1 6021 6144 -168 270 0 0 0 chr9 17019457 17019487 -125251957 + (CA)n Simple_repeat Simple_repeat 2 31 0 1240 156 60 39 chr9 17019487 17019641 -125251803 + L1MA9 LINE L1 6144 6308 -4 749 311 78 14 chr9 17019659 17020003 -125251441 + L2 LINE L2 2702 3063 -250 6686 44 0 0 chr9 17020012 17020825 -125250619 + L1PA5 LINE L1 5342 6154 0 631 216 110 5 chr9 17020831 17021112 -125250332 - L1M4 LINE L1 -699 5475 5173 1817 116 44 44 chr9 17021144 17021507 -125249937 - L1MA4A LINE L1 -5 6298 5936 2225 105 3 0 chr9 17021533 17021827 -125249617 - AluSx SINE Alu -17 295 1 773 140 0 91 chr9 17021832 17021975 -125249469 - FLAM_C SINE Alu -3 130 1 1733 96 16 8 chr9 17021975 17022225 -125249219 - L1MA4A LINE L1 -353 5950 5699 225 0 0 0 chr9 17022244 17022269 -125249175 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 22 35 0 0 chr9 17023634 17023663 -125247781 + AT_rich Low_complexity Low_complexity 1 29 0 1674 175 3 30 chr9 17024482 17024785 -125246659 + AluJb SINE Alu 3 297 -15 22 0 0 0 chr9 17025008 17025030 -125246414 + AT_rich Low_complexity Low_complexity 1 22 0 435 262 86 27 chr9 17025367 17025554 -125245890 + MIR SINE MIR 7 204 -58 902 85 0 0 chr9 17025555 17025673 -125245771 + AluY SINE Alu 187 304 -7 6274 216 33 34 chr9 17025698 17026448 -125244996 + L1MC4 LINE L1 2280 3029 -3117 773 173 0 8 chr9 17026448 17026575 -125244869 + FLAM_A SINE Alu 4 129 -4 6274 216 33 34 chr9 17026575 17026979 -125244465 + L1MC4 LINE L1 3029 3432 -2714 2222 115 3 0 chr9 17026979 17027283 -125244161 + AluSg SINE Alu 5 309 -1 6274 216 33 34 chr9 17027283 17027928 -125243516 + L1MC4 LINE L1 3432 4078 -2068 2158 100 0 33 chr9 17028030 17028331 -125243113 - AluSp SINE Alu -22 291 1 1613 180 10 23 chr9 17028511 17028811 -125242633 + AluJb SINE Alu 1 296 -16 2901 211 54 33 chr9 17028856 17030111 -125241333 + L1MC4 LINE L1 4690 5398 -748 3086 230 51 25 chr9 17030112 17031323 -125240121 + L1ME2 LINE L1 4842 6088 -76 1821 127 22 9 chr9 17031323 17031647 -125239797 + L1MA4A LINE L1 5968 6295 -8 3086 230 51 25 chr9 17031647 17031714 -125239730 + L1ME2 LINE L1 6088 6152 -12 30 0 0 0 chr9 17031900 17031930 -125239514 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr9 17032473 17032502 -125238942 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr9 17033086 17033132 -125238312 + AT_rich Low_complexity Low_complexity 1 46 0 351 273 76 58 chr9 17034936 17035108 -125236336 + MIR3 SINE MIR 33 207 -1 277 335 42 108 chr9 17036795 17036835 -125234609 - MIR SINE MIR -96 166 125 2340 103 0 0 chr9 17036835 17037136 -125234308 + AluSx SINE Alu 1 301 -11 277 335 42 108 chr9 17037136 17037262 -125234182 - MIR SINE MIR -137 125 11 6507 143 20 2 chr9 17038156 17039147 -125232297 - L1M1 LINE L1 -6541 1024 16 2132 165 58 5 chr9 17039150 17039526 -125231918 + MSTD LTR MaLR 1 396 0 421 167 24 0 chr9 17039894 17039978 -125231466 + L1MB2 LINE L1 5923 6008 -163 243 196 36 0 chr9 17039978 17040034 -125231410 + MLT2B2 LTR ERVL 1 58 -457 4603 268 41 37 chr9 17040814 17042318 -125229126 + ERVL LTR ERVL 1308 2817 -2947 2910 259 33 10 chr9 17042336 17043638 -125227806 + ERVL LTR ERVL 3238 4603 -1161 691 134 8 8 chr9 17043638 17043757 -125227687 + L1MB2 LINE L1 5890 6008 -163 1115 234 174 30 chr9 17043757 17044091 -125227353 + MLT2B1 LTR ERVL 1 382 -138 635 200 60 0 chr9 17044094 17044244 -125227200 + ERVL LTR ERVL 5219 5377 -387 431 192 13 0 chr9 17044256 17044334 -125227110 + Tigger5 DNA MER2_type 1 79 -2244 540 202 18 0 chr9 17044362 17044471 -125226973 + MLT2B1 LTR ERVL 512 622 -6 574 198 98 11 chr9 17044842 17045018 -125226426 - MER3 DNA MER1_type -86 123 12 417 233 41 0 chr9 17045018 17045164 -125226280 + L1MC5 LINE L1 7344 7495 -466 1988 128 7 3 chr9 17045169 17045457 -125225987 + AluSx SINE Alu 1 289 -23 2065 98 25 3 chr9 17045465 17045750 -125225694 + AluY SINE Alu 1 291 -20 213 179 0 0 chr9 17045750 17045781 -125225663 + GA-rich Low_complexity Low_complexity 6 39 0 24 77 0 0 chr9 17045900 17045952 -125225492 + AT_rich Low_complexity Low_complexity 1 52 0 500 197 88 27 chr9 17046068 17046215 -125225229 + L1MC5 LINE L1 7758 7913 -48 22 35 0 0 chr9 17046391 17046420 -125225024 + AT_rich Low_complexity Low_complexity 1 29 0 2100 128 0 0 chr9 17047922 17048204 -125223240 + AluSx SINE Alu 5 286 -26 1787 176 14 0 chr9 17049478 17049768 -125221676 + AluJb SINE Alu 1 294 -18 3437 27 2 0 chr9 17049872 17050276 -125221168 - L1PA3 LINE L1 -186 5969 5565 21 0 0 0 chr9 17050709 17050730 -125220714 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr9 17050876 17050918 -125220526 + AT_rich Low_complexity Low_complexity 1 42 0 242 300 0 0 chr9 17052215 17052265 -125219179 + L2 LINE L2 3207 3256 -16 2125 126 10 0 chr9 17054099 17054393 -125217051 + AluSx SINE Alu 1 297 -15 241 284 23 0 chr9 17054496 17054584 -125216860 - L1MC4 LINE L1 -1339 6703 6614 * 249 277 0 0 chr9 17054505 17054588 -125216856 + L1MC4 LINE L1 6621 6703 -1339 505 85 0 0 chr9 17055292 17055374 -125216070 - L1PB1 LINE L1 -4 6147 6066 3216 179 26 17 chr9 17055777 17056474 -125214970 - L1MB7 LINE L1 -19 6165 5463 33684 71 3 3 chr9 17056484 17060895 -125210549 + L1P LINE L1 11 4420 -1726 578 134 67 45 chr9 17061553 17061687 -125209757 + L1MA5A LINE L1 6160 6296 -1 21 36 0 0 chr9 17061764 17061792 -125209652 + AT_rich Low_complexity Low_complexity 1 28 0 221 167 0 0 chr9 17061851 17061887 -125209557 + MIR3 SINE MIR 151 186 -22 1476 201 10 7 chr9 17064306 17064594 -125206850 + AluJo SINE Alu 9 297 -15 1723 191 0 3 chr9 17065935 17066218 -125205226 + AluJo SINE Alu 1 282 -30 479 93 0 13 chr9 17066219 17066294 -125205150 + (TA)n Simple_repeat Simple_repeat 1 74 0 183 80 0 0 chr9 17066314 17066339 -125205105 + (TG)n Simple_repeat Simple_repeat 2 26 0 229 300 0 12 chr9 17066356 17066436 -125205008 + (TA)n Simple_repeat Simple_repeat 1 79 0 668 247 104 91 chr9 17066855 17067611 -125203833 + HAL1 LINE L1 1104 1869 -638 632 170 0 0 chr9 17067618 17067724 -125203720 + L1PA6 LINE L1 5 110 -6351 * 30812 77 4 10 chr9 17067707 17072799 -125198645 + L1PA6 LINE L1 1408 6467 -2 296 242 32 32 chr9 17072820 17072915 -125198529 + HAL1 LINE L1 1865 1959 -548 926 188 0 0 chr9 17073033 17073193 -125198251 - AluJo/FRAM SINE Alu -8 304 145 412 192 0 5 chr9 17073196 17073286 -125198158 - AluJ/FLAM SINE Alu -230 72 1 246 219 355 7 chr9 17073288 17073443 -125198001 - L2 LINE L2 -8 3305 3097 762 233 95 38 chr9 17073474 17073791 -125197653 + HAL1 LINE L1 2167 2501 -6 204 40 0 0 chr9 17074169 17074194 -125197250 + (T)n Simple_repeat Simple_repeat 1 25 0 1615 143 0 7 chr9 17074541 17074820 -125196624 + L1MA4 LINE L1 6024 6300 0 22 0 0 0 chr9 17075308 17075330 -125196114 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr9 17075567 17075590 -125195854 + AT_rich Low_complexity Low_complexity 1 23 0 563 329 98 11 chr9 17075840 17076126 -125195318 - L3 LINE CR1 -10 1567 1257 446 270 25 45 chr9 17076377 17076486 -125194958 + MER113 DNA MER1_type? 16 121 -400 2245 108 0 0 chr9 17076486 17076783 -125194661 - AluSx SINE Alu -15 297 1 446 270 25 45 chr9 17076783 17076873 -125194571 + MER113 DNA MER1_type? 121 211 -310 283 256 250 0 chr9 17077083 17077247 -125194197 + MIR SINE MIR 58 262 0 1104 143 0 12 chr9 17077367 17077528 -125193916 - AluJo SINE Alu -75 237 79 25 0 0 0 chr9 17078326 17078351 -125193093 + AT_rich Low_complexity Low_complexity 1 25 0 1925 162 0 7 chr9 17078358 17078648 -125192796 - AluJo SINE Alu -24 288 1 309 185 15 0 chr9 17078805 17078870 -125192574 + L1MC5 LINE L1 7725 7790 -171 830 167 13 20 chr9 17078873 17079023 -125192421 + FRAM SINE Alu 18 166 -10 398 141 81 30 chr9 17079061 17079160 -125192284 + L1MC5 LINE L1 7808 7911 -50 2075 75 4 4 chr9 17079191 17079457 -125191987 + AluSp SINE Alu 44 309 -4 219 36 0 0 chr9 17079551 17079579 -125191865 + (TG)n Simple_repeat Simple_repeat 2 29 0 1792 180 0 0 chr9 17079598 17079893 -125191551 + AluJb SINE Alu 1 295 -17 1940 138 16 3 chr9 17079893 17080213 -125191231 - L1PB4 LINE L1 -19 6137 5814 2524 67 0 3 chr9 17080241 17080553 -125190891 + AluY SINE Alu 1 311 0 249 211 42 0 chr9 17080608 17080679 -125190765 + L1MC4a LINE L1 5875 5948 -1860 316 314 13 85 chr9 17080969 17081122 -125190322 + MIR SINE MIR 56 197 -65 2019 119 0 18 chr9 17081122 17081453 -125189991 - AluSx SINE Alu 0 326 1 305 318 27 9 chr9 17081460 17081570 -125189874 - L2 LINE L2 -5 3308 3197 2071 121 0 0 chr9 17081870 17082151 -125189293 - AluSx SINE Alu -30 282 2 4323 117 10 41 chr9 17082814 17082847 -125188597 + L1PA16 LINE L1 5468 5500 -666 2436 60 0 0 chr9 17082847 17083148 -125188296 - AluY SINE Alu -9 302 2 4323 117 10 41 chr9 17083148 17083826 -125187618 + L1PA16 LINE L1 5500 6157 -9 2474 176 72 9 chr9 17085234 17085695 -125185749 - MLT1D LTR MaLR -8 497 8 268 333 89 22 chr9 17085755 17085980 -125185464 + L2 LINE L2 2636 2875 -439 938 178 168 0 chr9 17086053 17086244 -125185200 - MER58A DNA MER1_type 0 224 2 196 365 144 0 chr9 17086437 17086541 -125184903 + L2 LINE L2 3177 3295 -18 287 197 127 0 chr9 17086623 17086694 -125184750 - Cheshire DNA MER1_type -2131 289 210 250 309 0 0 chr9 17086697 17086752 -125184692 - Cheshire DNA MER1_type -2364 56 2 3426 221 3 43 chr9 17087216 17087807 -125183637 - L1ME1 LINE L1 -5 6161 5639 2382 76 0 10 chr9 17087807 17088110 -125183334 - AluY SINE Alu -11 300 1 3426 221 3 43 chr9 17088110 17088605 -125182839 - L1ME1 LINE L1 -527 5639 5126 22 35 0 0 chr9 17088903 17088932 -125182512 + AT_rich Low_complexity Low_complexity 1 29 0 2662 42 12 0 chr9 17088956 17089287 -125182157 - L1PA4 LINE L1 0 6155 5821 1366 100 0 0 chr9 17089294 17089484 -125181960 - L1P LINE L1 -5956 190 1 262 161 62 12 chr9 17090148 17090229 -125181215 + L1MC5 LINE L1 7610 7694 -267 511 216 108 0 chr9 17090243 17090354 -125181090 + FLAM_C SINE Alu 1 123 -20 729 223 34 39 chr9 17090386 17090619 -125180825 + L1MC5 LINE L1 7694 7925 -36 1641 179 0 11 chr9 17090706 17090985 -125180459 + AluJb SINE Alu 1 276 -36 1478 186 7 62 chr9 17091331 17091407 -125180037 + L1M4 LINE L1 4684 4763 -1383 1452 179 52 34 chr9 17091407 17091698 -125179746 + AluSx SINE Alu 1 296 -16 1478 186 7 62 chr9 17091698 17092024 -125179420 + L1M4 LINE L1 4763 5064 -1082 1133 177 20 15 chr9 17092027 17092230 -125179214 + AluJb SINE Alu 87 290 -22 25 75 0 0 chr9 17092466 17092519 -125178925 + AT_rich Low_complexity Low_complexity 1 53 0 884 156 7 7 chr9 17093120 17093274 -125178170 - L1M4 LINE L1 -527 5638 5481 21 36 0 0 chr9 17094120 17094148 -125177296 + AT_rich Low_complexity Low_complexity 1 28 0 234 299 0 45 chr9 17094181 17094248 -125177196 - L2 LINE L2 -5 3267 3204 207 293 159 57 chr9 17094266 17094423 -125177021 - L2 LINE L2 -1 3312 3140 484 269 103 13 chr9 17094786 17094942 -125176502 + MIR SINE MIR 77 246 -16 2178 115 0 0 chr9 17095058 17095354 -125176090 - AluY SINE Alu -15 296 1 797 295 48 47 chr9 17095457 17095769 -125175675 - L1M4 LINE L1 -1092 5054 4744 1955 139 0 17 chr9 17095769 17096057 -125175387 - AluSx SINE Alu -29 283 1 797 295 48 47 chr9 17096057 17096430 -125175014 - L1M4 LINE L1 -1402 4744 4333 2423 170 19 19 chr9 17096430 17096907 -125174537 - L1MB5 LINE L1 -2 6172 5696 797 295 48 47 chr9 17096907 17097224 -125174220 - L1M4 LINE L1 -1813 4333 4018 638 216 15 22 chr9 17098120 17098254 -125173190 - FLAM_A SINE Alu 0 133 1 594 182 0 0 chr9 17098401 17098500 -125172944 - AluJ/FLAM SINE Alu -213 99 1 1850 162 3 19 chr9 17098575 17098889 -125172555 - AluJo SINE Alu 0 312 4 34026 91 24 43 chr9 17102055 17108327 -125163117 + L1PA6 LINE L1 11 6154 0 444 313 49 6 chr9 17109698 17109888 -125161556 + MIR SINE MIR 57 253 -9 795 212 40 54 chr9 17110061 17110283 -125161161 + MIR SINE MIR 44 262 0 2985 159 31 65 chr9 17110728 17111401 -125160043 + L1MB8 LINE L1 5524 6173 -5 323 235 0 35 chr9 17111446 17111531 -125159913 - MLT1L LTR MaLR -338 277 196 2401 90 10 67 chr9 17111793 17112103 -125159341 - L1PA16 LINE L1 0 6166 5840 1859 154 39 39 chr9 17112103 17112459 -125158985 + THE1B LTR MaLR 5 360 -4 11456 81 13 16 chr9 17112467 17114051 -125157393 + THE1B-int LTR MaLR 1 1580 0 2021 143 48 28 chr9 17114051 17114408 -125157036 + THE1B LTR MaLR 1 364 0 2401 90 10 67 chr9 17114408 17114476 -125156968 - L1PA16 LINE L1 -331 5835 5800 213 103 0 77 chr9 17114524 17114563 -125156881 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 1586 199 85 16 chr9 17114772 17115149 -125156295 - L1MC4 LINE L1 -198 7844 7442 370 282 15 8 chr9 17115161 17115292 -125156152 - L1ME4a LINE L1 -218 5903 5772 519 236 115 7 chr9 17115835 17115983 -125155461 + MIR SINE MIR 1 164 -98 507 206 194 0 chr9 17116869 17117016 -125154428 + MER5A DNA MER1_type 4 183 -6 34 42 0 0 chr9 17117028 17117076 -125154368 + AT_rich Low_complexity Low_complexity 1 48 0 543 236 120 54 chr9 17118077 17118318 -125153126 - L1ME1 LINE L1 -7 6159 5903 1000 255 48 131 chr9 17118340 17119059 -125152385 - MER21B LTR ERV1 -193 670 35 1202 236 14 7 chr9 17119082 17119379 -125152065 - L1ME1 LINE L1 -251 5913 5615 3617 250 87 83 chr9 17119438 17121121 -125150323 - L2 LINE L2 -337 2977 1288 454 261 62 8 chr9 17121128 17121258 -125150186 - L2 LINE L2 -2139 1175 1039 2192 226 37 31 chr9 17121258 17121744 -125149700 + LTR40a LTR ERVL 1 489 -30 575 152 0 22 chr9 17121746 17121838 -125149606 - FRAM/FAM SINE Alu -93 83 1 1011 210 77 55 chr9 17121852 17122063 -125149381 + Charlie2 DNA MER1_type 2433 2657 -205 1783 173 0 31 chr9 17122063 17122381 -125149063 - AluJo SINE Alu -2 310 3 1011 210 77 55 chr9 17122381 17122535 -125148909 + Charlie2 DNA MER1_type 2657 2806 -56 2000 211 57 39 chr9 17122535 17123029 -125148415 - MLT1D LTR MaLR -2 503 1 598 182 0 0 chr9 17123214 17123324 -125148120 - AluSq/x SINE Alu -202 110 1 378 330 162 38 chr9 17123341 17123768 -125147676 + L2 LINE L2 2175 2654 -660 258 237 13 26 chr9 17124060 17124136 -125147308 + MIR SINE MIR 138 212 -50 906 208 27 88 chr9 17124654 17124948 -125146496 + Charlie4 DNA MER1_type 1 276 -1685 1009 248 92 75 chr9 17125151 17125791 -125145653 + Charlie4 DNA MER1_type 1293 1943 -18 21 36 0 0 chr9 17126291 17126319 -125145125 + AT_rich Low_complexity Low_complexity 1 28 0 238 295 18 27 chr9 17126339 17126451 -125144993 - L1MC/D LINE L1 -1999 5809 5699 192 167 48 0 chr9 17126487 17126529 -125144915 - L3 LINE CR1 -708 869 826 378 286 156 59 chr9 17126581 17127141 -125144303 - L1MC/D LINE L1 -747 5399 4889 1765 156 3 3 chr9 17127141 17127423 -125144021 - AluSx SINE Alu -30 282 1 378 286 156 59 chr9 17127423 17127692 -125143752 - L1MC/D LINE L1 -1257 4889 4648 354 322 33 22 chr9 17127906 17128089 -125143355 - L2 LINE L2 -484 2830 2646 328 233 9 26 chr9 17128256 17128372 -125143072 + (TTA)n Simple_repeat Simple_repeat 1 114 0 22 0 0 0 chr9 17128952 17128974 -125142470 + AT_rich Low_complexity Low_complexity 1 22 0 1999 147 24 72 chr9 17129256 17129672 -125141772 - MSTD LTR MaLR 0 396 1 265 281 176 41 chr9 17129888 17130183 -125141261 + L1MEd LINE L1 282 616 -5503 353 280 119 18 chr9 17130426 17130594 -125140850 + L1MEd LINE L1 918 1102 -5017 321 234 32 0 chr9 17130767 17130861 -125140583 - L1ME1 LINE L1 -8 6394 6298 * 323 167 0 135 chr9 17130858 17130954 -125140490 - L1PA15-16 LINE L1 -5466 1383 1301 * 884 145 0 150 chr9 17130947 17131174 -125140270 - L1PA15-16 LINE L1 -5436 1413 1221 * 1462 223 84 71 chr9 17131149 17131472 -125139972 - L1ME1 LINE L1 -520 6349 6032 1960 146 3 0 chr9 17131472 17131760 -125139684 - AluJb SINE Alu -23 289 1 1462 223 84 71 chr9 17131760 17132425 -125139019 - L1ME1 LINE L1 -837 6032 5326 422 234 124 9 chr9 17132458 17132668 -125138776 - L1ME1 LINE L1 -2789 3593 3356 769 73 0 73 chr9 17132668 17132805 -125138639 - L1PA8 LINE L1 0 6172 6046 793 294 35 0 chr9 17132842 17133039 -125138405 + MER58A DNA MER1_type 1 204 -20 1346 250 44 12 chr9 17133041 17133380 -125138064 - L1ME1 LINE L1 -4250 2313 1956 279 0 0 0 chr9 17133380 17133411 -125138033 + (TA)n Simple_repeat Simple_repeat 2 32 0 1346 250 44 12 chr9 17133411 17133503 -125137941 - L1ME1 LINE L1 -4607 1956 1868 347 300 58 16 chr9 17133508 17133698 -125137746 - L1ME1 LINE L1 -4756 1807 1610 9239 137 12 8 chr9 17133717 17136356 -125135088 - L1MA2 LINE L1 0 6304 3659 297 287 11 0 chr9 17136355 17136449 -125134995 - L1ME1 LINE L1 -4914 1470 1376 * 180 97 0 0 chr9 17136449 17136480 -125134964 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 13015 176 28 21 chr9 17136498 17142321 -125129123 - L1PA11 LINE L1 -8 6235 37 532 311 133 41 chr9 17142346 17143038 -125128406 - L2 LINE L2 -1884 1430 666 1788 177 19 40 chr9 17143038 17143411 -125128033 - MLT1A1 LTR MaLR 0 365 1 532 311 133 41 chr9 17143411 17143448 -125127996 - L2 LINE L2 -2648 666 634 551 140 43 0 chr9 17143531 17143624 -125127820 - MER3 DNA MER1_type -2 207 111 4697 94 12 154 chr9 17143624 17144582 -125126862 - LTR12 LTR ERV1 0 826 5 2291 197 26 30 chr9 17144598 17145203 -125126241 - pTR5 LTR ERV1 -1094 1344 742 572 232 9 0 chr9 17145203 17145315 -125126129 - MER3 DNA MER1_type -96 113 1 293 294 93 23 chr9 17147129 17147343 -125124101 + L1ME4a LINE L1 4086 4314 -1832 1634 161 47 0 chr9 17147347 17147626 -125123818 + AluSc SINE Alu 17 308 -1 14587 55 3 0 chr9 17147628 17149488 -125121956 - L1P LINE L1 -3429 2717 852 10775 41 7 2 chr9 17149490 17151572 -125119872 + L1PA5 LINE L1 4060 6148 -6 1487 130 8 25 chr9 17151828 17152067 -125119377 - MER46A DNA MER2_type -1 235 1 1167 175 22 36 chr9 17152325 17152548 -125118896 + AluJo SINE Alu 1 220 -92 275 133 0 0 chr9 17152548 17152593 -125118851 + FLAM_A SINE Alu 89 133 0 592 263 118 5 chr9 17152836 17153022 -125118422 - MIR SINE MIR -54 208 2 702 281 101 16 chr9 17153307 17153624 -125117820 + L1ME4a LINE L1 5384 5727 -394 267 203 0 0 chr9 17153651 17153715 -125117729 + GA-rich Low_complexity Low_complexity 3 66 0 1417 153 95 7 chr9 17153779 17154073 -125117371 + L1MA7 LINE L1 5972 6291 0 1314 182 56 94 chr9 17154123 17154591 -125116853 - LTR7 LTR ERV1 0 450 1 281 276 93 26 chr9 17154600 17154868 -125116576 + L1ME4a LINE L1 5835 6120 -1 362 225 0 0 chr9 17154985 17155065 -125116379 + MER116 DNA Mariner 1 80 0 308 274 112 28 chr9 17155214 17155393 -125116051 + MIR SINE MIR 57 250 -12 348 299 227 0 chr9 17155398 17155552 -125115892 + MIR SINE MIR 5 193 -69 287 277 53 0 chr9 17155601 17155695 -125115749 + MIR SINE MIR 161 259 -3 25 65 0 0 chr9 17156203 17156249 -125115195 + AT_rich Low_complexity Low_complexity 1 46 0 439 263 132 50 chr9 17157054 17157335 -125114109 + L2 LINE L2 3005 3308 -5 733 333 34 13 chr9 17159170 17159407 -125112037 + MIR SINE MIR 13 254 -8 2044 117 21 3 chr9 17159465 17159748 -125111696 + AluSx SINE Alu 1 288 -24 272 262 52 123 chr9 17160280 17160650 -125110794 + L1ME4a LINE L1 5708 6042 -79 793 189 0 0 chr9 17160650 17160777 -125110667 - FLAM_C SINE Alu -6 127 1 272 262 52 123 chr9 17160777 17160852 -125110592 + L1ME4a LINE L1 6042 6121 0 2196 112 0 0 chr9 17161518 17161812 -125109632 + AluSx SINE Alu 1 294 -18 2185 100 7 23 chr9 17162512 17162821 -125108623 - AluSx SINE Alu -8 304 1 2835 9 0 30 chr9 17162834 17163162 -125108282 - AluYb8 SINE Alu 0 318 1 24 0 0 0 chr9 17163656 17163680 -125107764 + AT_rich Low_complexity Low_complexity 1 24 0 897 28 9 0 chr9 17164891 17164997 -125106447 + U6 snRNA snRNA 1 107 0 28 29 0 0 chr9 17164997 17165032 -125106412 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 17165530 17165560 -125105884 + AT_rich Low_complexity Low_complexity 1 30 0 1639 99 0 0 chr9 17165560 17165772 -125105672 + AluY SINE Alu 1 212 -99 183 80 0 0 chr9 17165803 17165828 -125105616 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1603 55 5 0 chr9 17166220 17166420 -125105024 - L1P LINE L1 -1197 4949 4749 * 4133 30 0 0 chr9 17166418 17166918 -125104526 + L1P LINE L1 4254 4753 -1393 2499 150 9 21 chr9 17167464 17167897 -125103547 - L1MB2 LINE L1 -143 6264 5837 22 0 0 0 chr9 17167937 17167959 -125103485 + AT_rich Low_complexity Low_complexity 1 22 0 11703 31 15 0 chr9 17167959 17170151 -125101293 - L1PA3 LINE L1 0 6155 3942 10891 44 1 0 chr9 17170151 17171506 -125099938 + L1P LINE L1 1379 2735 -3411 9644 210 21 32 chr9 17171503 17172532 -125098912 - L1MB2 LINE L1 -567 5852 4813 * 2174 107 7 0 chr9 17172532 17172831 -125098613 - AluSp SINE Alu -12 301 1 9644 210 21 32 chr9 17172831 17174642 -125096802 - L1MB2 LINE L1 -1606 4813 3054 7468 126 42 16 chr9 17174654 17175889 -125095555 - L1MB2 LINE L1 -5100 1284 18 180 406 23 8 chr9 17176032 17176165 -125095279 - L2 LINE L2 -693 2621 2487 381 75 0 0 chr9 17178234 17178287 -125093157 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 285 330 18 18 chr9 17178288 17178400 -125093044 - L2 LINE L2 -10 3262 3151 572 137 46 77 chr9 17178403 17178574 -125092870 + MER3 DNA MER1_type 1 209 0 423 0 0 0 chr9 17178652 17178699 -125092745 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 332 299 89 32 chr9 17178709 17178866 -125092578 - L2 LINE L2 -215 3057 2892 449 276 9 19 chr9 17180416 17180521 -125090923 + L2 LINE L2 3210 3313 0 325 285 15 51 chr9 17181903 17182040 -125089404 - L1ME4a LINE L1 -5 6116 5985 1379 213 38 13 chr9 17182063 17182377 -125089067 + MER58B DNA MER1_type 20 341 0 303 298 85 28 chr9 17182387 17182528 -125088916 - L1ME4a LINE L1 -262 5859 5711 302 279 116 8 chr9 17182540 17182669 -125088775 - L1ME4a LINE L1 -484 5637 5495 210 191 0 0 chr9 17183027 17183074 -125088370 + (TA)n Simple_repeat Simple_repeat 1 47 0 1938 53 16 0 chr9 17183229 17183475 -125087969 + L1PA4 LINE L1 5905 6154 -1 641 312 85 16 chr9 17183517 17183834 -125087610 - L1MC/D LINE L1 -2096 5712 5374 1431 249 57 23 chr9 17183883 17184336 -125087108 + MLT1J LTR MaLR 1 503 -8 2122 107 0 7 chr9 17184908 17185199 -125086245 - AluSq SINE Alu -24 289 1 666 298 54 16 chr9 17185541 17185783 -125085661 + MIR SINE MIR 12 262 0 629 294 46 16 chr9 17185846 17186040 -125085404 - MIR SINE MIR -43 219 20 233 319 163 31 chr9 17186149 17186437 -125085007 - L2 LINE L2 0 3313 2988 239 279 0 0 chr9 17186577 17186638 -125084806 - MLT1H LTR MaLR -488 61 1 209 205 0 60 chr9 17187032 17187149 -125084295 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 234 276 270 33 chr9 17187733 17187885 -125083559 - MIR3 SINE MIR 0 208 21 2093 100 30 23 chr9 17188685 17188984 -125082460 - AluSx SINE Alu -11 301 1 885 124 78 60 chr9 17190954 17191171 -125080273 + L1PA16 LINE L1 5944 6164 -2 180 179 137 128 chr9 17192996 17193113 -125078331 - L2 LINE L2 -1313 2001 1884 789 161 0 0 chr9 17195087 17195211 -125076233 - FLAM_A SINE Alu -6 127 4 266 271 115 60 chr9 17195263 17195481 -125075963 - MIR SINE MIR -26 236 7 21 0 0 0 chr9 17195519 17195540 -125075904 + AT_rich Low_complexity Low_complexity 1 21 0 1216 176 33 61 chr9 17195915 17196363 -125075081 + MLT1D LTR MaLR 1 505 0 39 38 0 0 chr9 17196791 17196844 -125074600 + AT_rich Low_complexity Low_complexity 1 53 0 180 250 0 42 chr9 17197888 17197936 -125073508 + L3b LINE CR1 1362 1407 -176 1783 199 31 16 chr9 17198862 17199315 -125072129 - L1MB7 LINE L1 0 6184 5725 2661 221 31 17 chr9 17199315 17200085 -125071359 - L1M4 LINE L1 -1872 4274 3491 357 55 0 0 chr9 17200096 17200151 -125071293 - L1MB3 LINE L1 -2 6181 6127 1164 219 55 77 chr9 17200921 17200984 -125070460 + MLT1A2 LTR MaLR 1 64 -310 1806 116 116 33 chr9 17200984 17201320 -125070124 - THE1B LTR MaLR 0 364 1 1164 219 55 77 chr9 17201320 17201635 -125069809 + MLT1A2 LTR MaLR 64 371 -3 458 261 98 20 chr9 17202450 17202603 -125068841 + MIR SINE MIR 71 235 -27 270 0 0 0 chr9 17203626 17203656 -125067788 + (TG)n Simple_repeat Simple_repeat 1 30 0 450 0 0 0 chr9 17203959 17204009 -125067435 + (TG)n Simple_repeat Simple_repeat 2 51 0 228 244 0 0 chr9 17204636 17204681 -125066763 + (TATG)n Simple_repeat Simple_repeat 3 47 0 287 307 161 11 chr9 17204684 17204958 -125066486 + L1ME4a LINE L1 5583 5897 -224 300 214 182 13 chr9 17205174 17205333 -125066111 + L1ME4a LINE L1 5935 6120 -1 384 292 125 0 chr9 17205678 17205822 -125065622 - MIR SINE MIR -35 227 66 525 298 73 49 chr9 17207093 17207493 -125063951 + L1MC/D LINE L1 4877 5289 -857 1032 115 13 6 chr9 17207493 17207650 -125063794 + L1PA15 LINE L1 6006 6163 -2 265 235 86 10 chr9 17207718 17207842 -125063602 + L1MC/D LINE L1 5652 5783 -576 4550 107 7 16 chr9 17207910 17208646 -125062798 - Tigger4(Zombi) DNA MER2_type 0 2731 2003 39580 63 4 4 chr9 17208659 17214800 -125056644 + L1PA5 LINE L1 11 6145 -9 12331 120 18 20 chr9 17214800 17216822 -125054622 - Tigger4(Zombi) DNA MER2_type -710 2021 4 29 0 0 0 chr9 17217003 17217032 -125054412 + AT_rich Low_complexity Low_complexity 1 29 0 703 316 37 39 chr9 17217207 17217698 -125053746 - LTR16B LTR ERVL 0 464 3 780 307 69 41 chr9 17217703 17218811 -125052633 - ERVL LTR ERVL -18 5325 4001 312 322 0 0 chr9 17218813 17218900 -125052544 - ERVL LTR ERVL -1477 4287 4201 971 206 113 0 chr9 17219240 17219444 -125052000 + AluJo SINE Alu 81 307 -5 627 209 12 6 chr9 17219447 17219619 -125051825 + GA-rich Low_complexity Low_complexity 4 176 0 186 43 0 0 chr9 17219626 17219649 -125051795 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 306 205 90 41 chr9 17220693 17220815 -125050629 - L2 LINE L2 -1899 1415 1288 204 40 0 0 chr9 17221604 17221629 -125049815 + (TG)n Simple_repeat Simple_repeat 2 26 0 6353 130 54 31 chr9 17221764 17222040 -125049404 + Tigger3b DNA MER2_type 1 269 -2759 1839 154 37 3 chr9 17222040 17222339 -125049105 - AluJo SINE Alu -3 309 1 6353 130 54 31 chr9 17222339 17223264 -125048180 + Tigger3b DNA MER2_type 269 1230 -1 589 206 56 56 chr9 17223380 17223540 -125047904 + MIR3 SINE MIR 48 207 -1 3915 155 44 72 chr9 17225219 17225715 -125045729 - L1MB8 LINE L1 -9 6169 5661 1251 165 91 77 chr9 17225715 17226054 -125045390 - MER2 DNA MER2_type 0 344 1 3915 155 44 72 chr9 17226054 17226157 -125045287 - L1MB8 LINE L1 -517 5661 5557 1519 134 0 9 chr9 17226157 17226374 -125045070 - AluSx SINE Alu -97 215 1 3915 155 44 72 chr9 17226374 17226643 -125044801 - L1MB8 LINE L1 -621 5557 5282 7419 39 1 0 chr9 17226643 17228117 -125043327 - L1PA4 LINE L1 0 6155 4681 3915 155 44 72 chr9 17228117 17228576 -125042868 - L1MB8 LINE L1 -896 5282 4867 42 20 0 0 chr9 17229238 17229287 -125042157 + AT_rich Low_complexity Low_complexity 1 49 0 180 303 0 30 chr9 17230266 17230332 -125041112 + L2 LINE L2 3245 3308 -5 275 318 133 7 chr9 17231875 17232026 -125039418 - L2 LINE L2 0 3272 3103 262 309 159 45 chr9 17232445 17233025 -125038419 - HAL1 LINE L1 -1032 1475 830 9879 120 52 17 chr9 17233854 17235245 -125036199 - Tigger1 DNA MER2_type 0 2418 955 685 75 0 0 chr9 17235245 17235338 -125036106 + L1PA5 LINE L1 6058 6150 -4 9879 120 52 17 chr9 17235338 17235629 -125035815 - Tigger1 DNA MER2_type -1463 955 676 3374 145 42 0 chr9 17235827 17236421 -125035023 - L1MB3 LINE L1 -7 6176 5558 214 241 0 19 chr9 17236588 17236642 -125034802 + L2 LINE L2 3219 3271 -1 27 62 0 0 chr9 17237326 17237374 -125034070 + AT_rich Low_complexity Low_complexity 1 48 0 409 295 63 8 chr9 17237600 17237854 -125033590 - L1ME LINE L1 -341 5780 5513 202 343 57 0 chr9 17238835 17238905 -125032539 + MER91C DNA MER1_type 31 104 -36 202 200 0 0 chr9 17239774 17239814 -125031630 + GA-rich Low_complexity Low_complexity 1 40 0 421 200 0 90 chr9 17240192 17240276 -125031168 - Tigger7 DNA MER2_type -1 2490 2415 1771 146 79 3 chr9 17240276 17240606 -125030838 + MER46B DNA MER2_type 3 232 -4 421 200 0 90 chr9 17240606 17240621 -125030823 - Tigger7 DNA MER2_type -76 2415 2400 * 2777 193 31 14 chr9 17240620 17241132 -125030312 - Tigger7 DNA MER2_type -212 521 1 2207 105 0 7 chr9 17241304 17241598 -125029846 - AluSc SINE Alu -17 292 1 430 300 122 22 chr9 17241707 17241937 -125029507 + MIR SINE MIR 9 261 -1 735 300 32 8 chr9 17241963 17242210 -125029234 + MLT1I LTR MaLR 157 409 0 490 120 13 0 chr9 17243310 17243385 -125028059 - AluSg/x SINE Alu -16 294 219 2311 168 98 13 chr9 17244061 17244508 -125026936 + MLT1D LTR MaLR 21 505 0 279 224 35 0 chr9 17245102 17245160 -125026284 + MER81 DNA DNA 3 62 -52 241 215 21 108 chr9 17245173 17245206 -125026238 - MER81 DNA DNA -29 85 51 3273 183 17 19 chr9 17245206 17245372 -125026072 + L1MB5 LINE L1 5528 5693 -481 1938 123 0 57 chr9 17245372 17245697 -125025747 + AluSx SINE Alu 1 308 0 3273 183 17 19 chr9 17245697 17246170 -125025274 + L1MB5 LINE L1 5693 6167 -7 241 215 21 108 chr9 17246170 17246229 -125025215 - MER81 DNA DNA -63 51 1 21 0 0 0 chr9 17247673 17247694 -125023750 + AT_rich Low_complexity Low_complexity 1 21 0 191 309 191 0 chr9 17248223 17248317 -125023127 - L2 LINE L2 -229 3043 2932 350 204 75 0 chr9 17248706 17248799 -125022645 - MER53 DNA DNA -89 100 1 1242 239 145 12 chr9 17248859 17249265 -125022179 + LTR16B LTR ERVL 1 460 -4 508 263 65 5 chr9 17249597 17249783 -125021661 + MER117 DNA MER1_type 1 197 0 1770 174 37 29 chr9 17250083 17250434 -125021010 - MLT1A1 LTR MaLR -11 354 1 990 181 0 0 chr9 17252837 17252997 -125018447 - FRAM SINE Alu -19 157 1 3754 102 13 17 chr9 17253444 17253974 -125017470 + MER1A DNA MER1_type 2 529 0 207 196 43 0 chr9 17255983 17256029 -125015415 - L2 LINE L2 -9 3304 3257 1311 277 58 70 chr9 17256541 17256575 -125014869 + L1MEd LINE L1 804 837 -5693 2437 81 0 0 chr9 17256575 17256883 -125014561 + AluY SINE Alu 1 308 -3 1311 277 58 70 chr9 17256883 17257041 -125014403 + L1MEd LINE L1 837 995 -5535 2834 106 84 4 chr9 17257041 17257505 -125013939 + L1MA5 LINE L1 5799 6299 -1 1311 277 58 70 chr9 17257505 17258186 -125013258 + L1MEd LINE L1 995 1668 -4862 257 286 30 38 chr9 17258278 17258411 -125013033 + HAL1 LINE L1 1483 1614 -893 240 270 125 13 chr9 17258838 17258990 -125012454 + L1MEd LINE L1 2436 2604 -3936 250 250 0 0 chr9 17259029 17259097 -125012347 + A-rich Low_complexity Low_complexity 1 68 0 317 287 18 61 chr9 17259893 17260057 -125011387 - MLT1J LTR MaLR -280 231 75 258 138 17 52 chr9 17260188 17260246 -125011198 - PABL_B-int LTR ERV1 -4929 2193 2138 204 277 60 24 chr9 17262261 17262344 -125009100 - MIR SINE MIR -65 143 58 314 278 42 35 chr9 17262682 17262826 -125008618 + MIR SINE MIR 87 231 -31 183 288 17 0 chr9 17262798 17262857 -125008587 + L2 LINE L2 3251 3310 -3 * 23 0 0 0 chr9 17263471 17263494 -125007950 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 17264735 17264760 -125006684 + AT_rich Low_complexity Low_complexity 1 25 0 805 208 17 0 chr9 17265366 17265544 -125005900 - LTR16C LTR ERVL -2 489 309 978 195 13 66 chr9 17265556 17265782 -125005662 - MER20 DNA MER1_type -3 216 3 262 250 244 0 chr9 17266157 17266325 -125005119 - MIR SINE MIR -6 256 48 576 315 121 47 chr9 17266681 17266735 -125004709 + L2 LINE L2 1914 1963 -1351 2379 94 39 36 chr9 17266735 17267098 -125004346 + THE1B LTR MaLR 1 364 0 576 315 121 47 chr9 17267098 17267728 -125003716 + L2 LINE L2 1963 2649 -665 311 255 201 27 chr9 17267917 17268066 -125003378 + MIR SINE MIR 88 262 0 310 291 0 64 chr9 17268756 17268866 -125002578 + MIR SINE MIR 12 114 -148 534 163 116 47 chr9 17268929 17269058 -125002386 + MIR SINE MIR 104 241 -21 12104 142 24 24 chr9 17269131 17270100 -125001344 + Ricksha_c DNA DNA 1 969 -2285 2185 124 7 0 chr9 17270100 17270399 -125001045 - AluSx SINE Alu -11 301 1 12104 142 24 24 chr9 17270399 17271437 -125000007 + Ricksha_c DNA DNA 968 2008 -38 404 280 80 11 chr9 17271689 17271864 -124999580 + LTR33 LTR ERVL 305 491 -30 194 245 113 0 chr9 17271873 17271926 -124999518 - MIR SINE MIR -201 61 3 2629 93 28 0 chr9 17271992 17272346 -124999098 - THE1B LTR MaLR 0 364 1 330 314 65 6 chr9 17273343 17273512 -124997932 - MIR3 SINE MIR -6 202 24 251 261 34 12 chr9 17273585 17273712 -124997732 + MIR SINE MIR 2 130 -78 497 209 219 71 chr9 17275177 17275598 -124995846 - L2 LINE L2 -655 2659 2177 361 279 117 41 chr9 17276175 17276465 -124994979 + L1ME4a LINE L1 5793 6104 -17 1048 201 5 29 chr9 17276469 17276678 -124994766 + MER3 DNA MER1_type 1 204 -5 2076 129 0 10 chr9 17276683 17277000 -124994444 - AluSx SINE Alu 0 312 1 200 263 62 38 chr9 17277397 17277477 -124993967 - MIR SINE MIR -96 166 85 233 70 70 18 chr9 17277646 17277703 -124993741 + T-rich Low_complexity Low_complexity 2 61 0 180 0 0 0 chr9 17278265 17278285 -124993159 + (TAA)n Simple_repeat Simple_repeat 2 21 0 189 204 61 20 chr9 17279489 17279538 -124991906 - MIR SINE MIR -100 108 58 2950 16 0 0 chr9 17279708 17280026 -124991418 - AluYb8 SINE Alu 0 318 1 314 320 49 0 chr9 17281287 17281409 -124990035 + MIR SINE MIR 16 143 -65 331 210 62 0 chr9 17281491 17281572 -124989872 + MIR3 SINE MIR 118 203 -5 21 36 0 0 chr9 17281695 17281723 -124989721 + AT_rich Low_complexity Low_complexity 1 28 0 642 244 23 6 chr9 17281854 17282026 -124989418 - MIR SINE MIR 0 262 88 441 200 0 0 chr9 17282105 17282180 -124989264 + MER63 DNA MER1_type 677 751 -85 197 32 0 32 chr9 17282386 17282417 -124989027 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2093 142 3 3 chr9 17282456 17282786 -124988658 + L1PA15 LINE L1 5836 6165 0 252 100 0 0 chr9 17282808 17282848 -124988596 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 205 308 131 0 chr9 17283201 17283308 -124988136 + L2 LINE L2 3193 3313 0 313 294 0 11 chr9 17284002 17284094 -124987350 - MIR SINE MIR -61 147 57 261 241 314 15 chr9 17285923 17286012 -124985432 + MIR SINE MIR 47 108 -154 323 44 22 0 chr9 17286012 17286057 -124985387 + (TG)n Simple_repeat Simple_repeat 1 46 0 261 241 314 15 chr9 17286057 17286104 -124985340 + MIR SINE MIR 108 224 -38 8044 14 0 0 chr9 17286673 17288163 -124983281 - L1PA2 LINE L1 0 6155 4666 4242 23 0 0 chr9 17288165 17288650 -124982794 + L1P LINE L1 4136 4620 -1526 511 280 156 19 chr9 17288705 17288916 -124982528 + MIR SINE MIR 2 241 -21 213 231 0 0 chr9 17289617 17289656 -124981788 + (TG)n Simple_repeat Simple_repeat 1 39 0 201 74 0 0 chr9 17290205 17290232 -124981212 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1046 254 68 34 chr9 17291145 17291499 -124979945 + MLT1K LTR MaLR 190 555 -33 202 157 0 78 chr9 17293195 17293246 -124978198 + MIR SINE MIR 74 121 -87 943 259 136 93 chr9 17293571 17294612 -124976832 - HAL1 LINE L1 -1420 1087 2 394 368 108 19 chr9 17294686 17295163 -124976281 - L2 LINE L2 -49 3223 2702 505 240 226 19 chr9 17295973 17296056 -124975388 - MER112 DNA MER1_type -1 259 194 447 68 0 0 chr9 17296056 17296115 -124975329 + (CATAG)n Simple_repeat Simple_repeat 2 60 0 505 240 226 19 chr9 17296115 17296239 -124975205 - MER112 DNA MER1_type -66 194 9 324 264 18 80 chr9 17297554 17297717 -124973727 + MLT1H LTR MaLR 23 175 -374 1314 152 134 11 chr9 17298119 17298268 -124973176 + L1MA9 LINE L1 6003 6132 -180 408 20 0 0 chr9 17298268 17298317 -124973127 + (CA)n Simple_repeat Simple_repeat 2 50 0 1314 152 134 11 chr9 17298317 17298443 -124973001 + L1MA9 LINE L1 6132 6312 0 1879 166 44 121 chr9 17299461 17299966 -124971478 + MLT1C LTR MaLR 1 466 -1 657 264 34 6 chr9 17300025 17300203 -124971241 - MIR SINE MIR -21 241 59 317 318 8 24 chr9 17300335 17300461 -124970983 - L3 LINE CR1 -400 1177 1054 247 280 13 13 chr9 17301382 17301457 -124969987 + MLT1L LTR MaLR 8 82 -533 242 303 44 61 chr9 17303412 17303612 -124967832 - MIR SINE MIR -46 216 17 301 345 0 0 chr9 17304932 17305019 -124966425 - MIR3 SINE MIR -3 205 119 328 289 89 37 chr9 17305048 17305183 -124966261 + MIR3 SINE MIR 3 144 -64 245 248 64 40 chr9 17305437 17305562 -124965882 - MLT2E LTR ERVL 0 628 501 324 217 48 24 chr9 17305772 17305855 -124965589 - MLT2E LTR ERVL -509 119 35 11563 94 42 25 chr9 17306111 17306524 -124964920 - L1P LINE L1 -2427 3719 3314 1941 118 0 0 chr9 17306524 17306778 -124964666 - AluSg SINE Alu -16 294 41 11563 94 42 25 chr9 17306778 17308173 -124963271 - L1P LINE L1 -2832 3314 1881 9993 82 10 0 chr9 17308171 17309516 -124961928 + L1PA7 LINE L1 3726 5084 -1062 * 2759 72 0 0 chr9 17309512 17309874 -124961570 - L1PA7 LINE L1 -915 5231 4870 * 6768 60 23 0 chr9 17309874 17310786 -124960658 + L1PA7 LINE L1 5219 6150 -4 200 244 77 64 chr9 17312489 17312567 -124958877 - MER5A DNA MER1_type -3 186 108 181 288 17 0 chr9 17314698 17314757 -124956687 - L2 LINE L2 -795 2519 2460 242 97 0 0 chr9 17315027 17315058 -124956386 - MSTA LTR MaLR -393 35 5 * 1849 126 160 9 chr9 17315047 17315397 -124956047 + MSTA LTR MaLR 26 428 0 298 194 10 10 chr9 17315666 17315769 -124955675 + CT-rich Low_complexity Low_complexity 1 103 0 321 300 18 9 chr9 17315885 17315995 -124955449 + MIR SINE MIR 21 131 -131 239 221 58 0 chr9 17316049 17316135 -124955309 - L1MC4 LINE L1 -1336 6706 6616 288 305 19 19 chr9 17316762 17316867 -124954577 + LTR33 LTR ERVL 107 211 -310 632 258 43 48 chr9 17316924 17317133 -124954311 + LTR33 LTR ERVL 314 521 0 304 286 43 43 chr9 17317644 17317784 -124953660 - MIR SINE MIR -74 188 49 332 282 38 23 chr9 17318338 17318469 -124952975 + MIR SINE MIR 51 183 -79 210 191 0 0 chr9 17318545 17318587 -124952857 + (CAT)n Simple_repeat Simple_repeat 3 44 0 201 222 67 56 chr9 17318689 17318779 -124952665 + MIR SINE MIR 61 151 -111 763 142 86 25 chr9 17321435 17321597 -124949847 - MER53 DNA DNA 0 189 18 2318 204 56 68 chr9 17321604 17322261 -124949183 + MLT1E1 LTR MaLR 6 654 0 183 162 0 0 chr9 17322701 17322738 -124948706 + G-rich Low_complexity Low_complexity 4 40 0 241 303 22 25 chr9 17323502 17323652 -124947792 + MIR SINE MIR 13 139 -69 399 130 22 22 chr9 17324827 17324919 -124946525 + (TCCA)n Simple_repeat Simple_repeat 1 92 0 442 293 34 14 chr9 17324957 17325104 -124946340 - L2 LINE L2 -5 3267 3118 435 147 0 0 chr9 17327221 17327289 -124944155 - L1MC4 LINE L1 0 8042 7975 353 139 42 14 chr9 17327289 17327361 -124944083 - MER106A DNA MER1_type 0 236 163 1073 148 13 0 chr9 17327370 17327525 -124943919 - FRAM SINE Alu -20 156 1 529 243 54 7 chr9 17327530 17327678 -124943766 - MER106A DNA MER1_type -80 156 2 321 212 0 0 chr9 17327682 17327748 -124943696 - L1MC4 LINE L1 -63 7979 7914 180 273 0 0 chr9 17327767 17327833 -124943611 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 455 198 9 36 chr9 17327841 17327952 -124943492 - L1MC4 LINE L1 -128 7914 7807 292 276 40 0 chr9 17328901 17328977 -124942467 - MER2 DNA MER2_type 0 345 267 768 145 26 0 chr9 17328998 17329115 -124942329 + MSTB LTR MaLR 254 373 -53 1015 124 62 46 chr9 17329154 17329348 -124942096 - MER2 DNA MER2_type -134 211 15 2036 126 4 0 chr9 17329671 17329949 -124941495 + AluSx SINE Alu 5 283 -29 469 157 33 8 chr9 17329949 17330070 -124941374 + (TA)n Simple_repeat Simple_repeat 1 124 0 313 341 54 18 chr9 17330271 17330438 -124941006 - MIR3 SINE MIR -7 201 29 302 357 83 0 chr9 17331485 17331653 -124939791 - HERVL LTR ERVL -758 4896 4715 1021 141 0 0 chr9 17331767 17331916 -124939528 + FRAM SINE Alu 1 40 0 601 308 104 39 chr9 17331918 17332275 -124939169 - HERVL LTR ERVL -885 4600 4221 982 314 84 35 chr9 17332295 17332985 -124938459 - HERVL LTR ERVL -1710 4054 3331 1837 297 73 43 chr9 17333089 17334545 -124936899 + L1ME2 LINE L1 111 1611 -4785 2507 225 126 22 chr9 17334589 17335808 -124935636 + L1ME2 LINE L1 4876 6224 -9 385 361 79 1 chr9 17335828 17336041 -124935403 - HERVL LTR ERVL -2386 3268 3068 2328 141 20 0 chr9 17336043 17336391 -124935053 - THE1B LTR MaLR -2 362 8 2022 147 0 10 chr9 17336498 17336804 -124934640 + AluSx SINE Alu 1 303 -9 1515 197 17 27 chr9 17336823 17337123 -124934321 + AluJo SINE Alu 1 297 -15 1629 347 77 18 chr9 17337125 17338198 -124933246 - HERVL LTR ERVL -2738 3026 1890 891 212 5 5 chr9 17338202 17338386 -124933058 + MER5A DNA MER1_type 6 189 0 286 237 26 0 chr9 17338437 17338511 -124932933 - HERVL LTR ERVL -3666 1819 1743 298 278 67 22 chr9 17338995 17339085 -124932359 + MER101B LTR ERV1 1 94 -476 2167 122 68 6 chr9 17339102 17339455 -124931989 + THE1C LTR MaLR 1 375 0 1602 230 15 4 chr9 17339622 17339999 -124931445 + LTR51 LTR ERV1 228 838 -85 249 198 12 139 chr9 17342751 17342837 -124928607 - L2 LINE L2 0 3272 3198 183 300 0 0 chr9 17343052 17343102 -124928342 + L2 LINE L2 3137 3186 -86 271 176 39 0 chr9 17343172 17343223 -124928221 + MLT1L LTR MaLR 216 268 -347 292 336 26 0 chr9 17343261 17343377 -124928067 + MLT1L LTR MaLR 337 455 -160 232 231 0 22 chr9 17343461 17343552 -124927892 + CT-rich Low_complexity Low_complexity 5 93 0 33 43 0 0 chr9 17345283 17345330 -124926114 + AT_rich Low_complexity Low_complexity 1 47 0 335 204 119 68 chr9 17345517 17345693 -124925751 - L1MC4a LINE L1 -1963 5845 5661 417 269 151 8 chr9 17346728 17346847 -124924597 + MIR3 SINE MIR 20 155 -53 225 291 58 0 chr9 17346937 17347023 -124924421 - MIR SINE MIR -67 141 51 203 360 45 9 chr9 17347014 17347125 -124924319 + L2 LINE L2 2958 3072 -200 * 317 324 28 64 chr9 17347342 17347592 -124923852 + L2 LINE L2 2835 3075 -197 453 229 168 29 chr9 17347710 17347892 -124923552 - MLT1J LTR MaLR -40 575 289 245 250 94 0 chr9 17348137 17348201 -124923243 + MER5C DNA MER1_type 55 124 -200 973 214 107 85 chr9 17348859 17349261 -124922183 - MLT1C LTR MaLR -5 462 52 460 213 74 0 chr9 17349330 17349452 -124921992 - LTR16A LTR ERVL -9 441 311 266 270 0 27 chr9 17350780 17350854 -124920590 + CT-rich Low_complexity Low_complexity 5 76 0 187 370 83 22 chr9 17351586 17351767 -124919677 - MIR SINE MIR -70 192 1 633 296 40 26 chr9 17352823 17353055 -124918389 + MIR SINE MIR 23 261 -1 472 271 164 7 chr9 17353067 17353207 -124918237 - L2 LINE L2 -1 3271 3110 590 286 7 0 chr9 17353315 17353455 -124917989 + L2 LINE L2 3169 3309 -4 348 244 120 49 chr9 17353833 17354085 -124917359 - MLT1J1 LTR MaLR -191 259 1 462 272 104 63 chr9 17354444 17354779 -124916665 + MLT1J1 LTR MaLR 72 420 -26 2454 218 59 26 chr9 17354903 17355476 -124915968 + L1ME2 LINE L1 5526 6122 -42 2291 78 3 0 chr9 17355476 17355769 -124915675 + AluSp SINE Alu 1 294 -19 2454 218 59 26 chr9 17355769 17355805 -124915639 + L1ME2 LINE L1 6122 6155 -9 449 265 70 11 chr9 17357621 17357766 -124913678 + MIR SINE MIR 16 164 -58 559 216 0 0 chr9 17358035 17358137 -124913307 - LTR40a LTR ERVL -415 104 3 711 161 51 0 chr9 17358140 17358258 -124913186 - MER63 DNA MER1_type -86 750 1 270 153 0 0 chr9 17360128 17360187 -124911257 + CT-rich Low_complexity Low_complexity 1 59 0 553 219 182 21 chr9 17360791 17360978 -124910466 - MIR SINE MIR -26 236 20 414 0 0 0 chr9 17361662 17361708 -124909736 + (TG)n Simple_repeat Simple_repeat 2 47 0 246 389 8 8 chr9 17362076 17362202 -124909242 + MIR SINE MIR 22 147 -61 4735 141 31 7 chr9 17362206 17363021 -124908423 + L1MA8 LINE L1 5455 6288 -3 1977 155 63 39 chr9 17364089 17364504 -124906940 - MLT2D LTR ERVL -13 507 6 604 290 13 0 chr9 17364508 17364663 -124906781 - MIR SINE MIR -59 203 47 184 274 16 32 chr9 17366862 17366924 -124904520 - MIR3 SINE MIR -44 164 104 1846 155 0 19 chr9 17367223 17367532 -124903912 - AluJo SINE Alu -9 303 1 3027 188 42 20 chr9 17367618 17368573 -124902871 + L1M1 LINE L1 13 1100 -6465 5579 101 4 18 chr9 17368925 17369745 -124901699 - L1MA2 LINE L1 -6 6298 5491 874 293 216 5 chr9 17369747 17370258 -124901186 + L2 LINE L2 2703 3312 -1 855 264 90 41 chr9 17371605 17371992 -124899452 - MLT1I LTR MaLR -3 406 1 230 275 99 11 chr9 17372499 17372590 -124898854 + L3b LINE CR1 1363 1461 -122 559 292 71 6 chr9 17372601 17372769 -124898675 + MER5A DNA MER1_type 11 189 0 399 21 0 0 chr9 17375542 17375590 -124895854 + (TG)n Simple_repeat Simple_repeat 2 49 0 447 19 0 0 chr9 17376753 17376805 -124894639 + (TG)n Simple_repeat Simple_repeat 1 52 0 200 189 0 0 chr9 17377121 17377158 -124894286 + (CA)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chr9 17377243 17377268 -124894176 + AT_rich Low_complexity Low_complexity 1 25 0 35 63 0 0 chr9 17378862 17378925 -124892519 + AT_rich Low_complexity Low_complexity 1 63 0 563 318 19 102 chr9 17379567 17379929 -124891515 + L2 LINE L2 2939 3270 -2 430 269 91 65 chr9 17380286 17380472 -124890972 - L2 LINE L2 -4 3309 3119 364 267 32 105 chr9 17380946 17381150 -124890294 - MIR SINE MIR -72 190 3 261 75 0 0 chr9 17381339 17381379 -124890065 + (CA)n Simple_repeat Simple_repeat 1 40 0 316 323 60 8 chr9 17382307 17382440 -124889004 - MIR SINE MIR -5 257 118 647 245 369 9 chr9 17382447 17382871 -124888573 - L2 LINE L2 0 3313 2740 602 277 100 13 chr9 17383022 17383253 -124888191 - MLT1J LTR MaLR -252 259 9 1405 284 20 54 chr9 17383259 17383819 -124887625 - L2 LINE L2 -573 2741 2201 1818 191 135 12 chr9 17384733 17385147 -124886297 + MLT1C LTR MaLR 1 465 -2 2764 132 21 7 chr9 17385608 17386032 -124885412 - MSTB1 LTR MaLR -2 430 1 596 236 110 0 chr9 17386482 17386673 -124884771 - MER102b DNA MER1_type -27 314 103 5687 149 38 33 chr9 17386673 17387844 -124883600 + L1MC2 LINE L1 5161 6326 -18 2266 96 0 0 chr9 17387845 17388146 -124883298 + AluSg SINE Alu 1 301 -9 283 208 123 85 chr9 17388148 17388278 -124883166 - MER102b DNA MER1_type -206 135 1 501 265 99 7 chr9 17388329 17388480 -124882964 - MIR3 SINE MIR -12 196 32 258 357 39 8 chr9 17389065 17389194 -124882250 - MIR SINE MIR -54 208 76 677 293 38 14 chr9 17389593 17389836 -124881608 - MIR SINE MIR -15 247 2 259 275 83 28 chr9 17389836 17389900 -124881544 - MIR SINE MIR -32 230 161 585 236 146 17 chr9 17389900 17390078 -124881366 + MIR SINE MIR 3 203 -59 387 185 0 25 chr9 17390088 17390169 -124881275 - MIR SINE MIR -113 149 71 230 167 67 67 chr9 17391367 17391427 -124880017 - MIR3 SINE MIR -22 186 127 201 352 0 11 chr9 17391596 17391684 -124879760 + GA-rich Low_complexity Low_complexity 4 90 0 750 279 4 51 chr9 17392749 17392986 -124878458 - MIR SINE MIR 0 262 37 302 270 130 0 chr9 17393079 17393179 -124878265 - MIR SINE MIR -109 153 41 180 286 20 0 chr9 17393216 17393265 -124878179 + MIR3 SINE MIR 133 182 -26 341 242 53 0 chr9 17394651 17394746 -124876698 - L1MA9 LINE L1 -602 5703 5604 * 498 147 0 21 chr9 17394732 17394815 -124876629 + L1MA9 LINE L1 5701 5783 -508 189 0 0 0 chr9 17394815 17394836 -124876608 + (TG)n Simple_repeat Simple_repeat 2 22 0 498 147 0 21 chr9 17394836 17394847 -124876597 + L1MA9 LINE L1 5783 5793 -498 243 154 36 18 chr9 17394847 17394957 -124876487 + (TA)n Simple_repeat Simple_repeat 1 112 0 2240 176 52 17 chr9 17394974 17395442 -124876002 + L1MA9 LINE L1 5783 6274 -38 723 245 187 30 chr9 17395588 17395919 -124875525 - MLT1K LTR MaLR -68 520 138 452 321 70 56 chr9 17396516 17397126 -124874318 - L1MDa LINE L1 -2799 3741 3123 252 299 36 21 chr9 17397417 17397611 -124873833 - L1MDa LINE L1 -3747 2793 2597 303 276 165 0 chr9 17397613 17397783 -124873661 - L1MDa LINE L1 -3923 2617 2420 454 329 56 48 chr9 17398653 17399157 -124872287 - HAL1 LINE L1 -1070 1437 930 2303 82 0 0 chr9 17399442 17399733 -124871711 - AluY SINE Alu -20 291 1 1859 143 40 24 chr9 17400449 17400777 -124870667 + MER44D DNA MER2_type 3 605 -4 298 154 0 19 chr9 17400837 17400889 -124870555 + MLT1L LTR MaLR 135 185 -430 296 277 21 64 chr9 17401009 17401103 -124870341 + MLT1L LTR MaLR 341 430 -185 372 94 0 0 chr9 17401546 17401599 -124869845 + (CTG)n Simple_repeat Simple_repeat 1 53 0 301 328 40 0 chr9 17401885 17402010 -124869434 - MIR SINE MIR -15 247 118 936 101 0 0 chr9 17402966 17403085 -124868359 - AluSq/x SINE Alu -193 119 1 254 191 0 15 chr9 17403644 17403712 -124867732 + GA-rich Low_complexity Low_complexity 2 68 0 212 95 71 0 chr9 17404808 17404850 -124866594 + (ATATG)n Simple_repeat Simple_repeat 5 49 0 340 319 55 12 chr9 17404865 17405028 -124866416 - MIR SINE MIR -45 217 48 2629 200 76 0 chr9 17405402 17405913 -124865531 - MLT1F1 LTR MaLR 0 567 18 1618 188 65 3 chr9 17405923 17406216 -124865228 - AluJo SINE Alu -1 311 1 446 279 31 0 chr9 17406474 17406603 -124864841 - MIR SINE MIR -4 258 126 241 295 25 82 chr9 17406646 17406768 -124864676 - L2 LINE L2 -166 3106 2992 9176 38 0 0 chr9 17407484 17409339 -124862105 - L1PA4 LINE L1 0 6155 4299 1251 110 31 0 chr9 17410361 17410552 -124860892 + L1PA8 LINE L1 5974 6170 -2 2088 137 3 0 chr9 17410780 17411086 -124860358 - AluJb SINE Alu -5 307 1 557 270 181 0 chr9 17411209 17411413 -124860031 - MIR SINE MIR -13 249 9 198 143 0 0 chr9 17411809 17411844 -124859600 + (TG)n Simple_repeat Simple_repeat 2 36 0 327 284 16 24 chr9 17412665 17412792 -124858652 + CT-rich Low_complexity Low_complexity 1 126 0 311 318 65 61 chr9 17414530 17414772 -124856672 - MIR SINE MIR -12 250 10 24 0 0 0 chr9 17414829 17414853 -124856591 + AT_rich Low_complexity Low_complexity 1 24 0 315 149 287 11 chr9 17415088 17415182 -124856262 + MER117 DNA MER1_type 46 165 -32 226 243 40 14 chr9 17415234 17415308 -124856136 - MIR3 SINE MIR -48 160 85 226 268 153 38 chr9 17415451 17415608 -124855836 + MIR SINE MIR 37 211 -51 207 0 0 0 chr9 17418021 17418044 -124853400 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 461 274 93 30 chr9 17418678 17418879 -124852565 - MIR SINE MIR -41 221 9 21 36 0 0 chr9 17419155 17419183 -124852261 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr9 17419235 17419264 -124852180 + AT_rich Low_complexity Low_complexity 1 29 0 2469 82 3 0 chr9 17420056 17420359 -124851085 - AluY SINE Alu -7 304 1 268 161 54 0 chr9 17421427 17421483 -124849961 - MIR SINE MIR -64 144 86 262 320 8 16 chr9 17422084 17422206 -124849238 + MER103 DNA DNA 28 148 -18 314 214 112 31 chr9 17422675 17422773 -124848671 + MIR SINE MIR 36 141 -67 181 277 60 48 chr9 17424985 17425068 -124846376 + MIR SINE MIR 8 91 -171 1439 194 64 53 chr9 17426130 17426491 -124844953 - MLT1A1 LTR MaLR 0 365 1 195 42 0 0 chr9 17428379 17428403 -124843041 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2033 130 0 11 chr9 17428403 17428711 -124842733 - AluSx SINE Alu 0 305 1 4359 269 72 44 chr9 17428994 17431746 -124839698 - L1ME3A LINE L1 -5 6165 3325 184 301 115 27 chr9 17432403 17432586 -124838858 - L2 LINE L2 -1226 2088 1890 233 291 149 29 chr9 17432691 17432932 -124838512 - L2 LINE L2 -2 3311 3042 647 275 77 13 chr9 17434472 17434705 -124836739 - MIR SINE MIR 0 262 15 180 0 0 0 chr9 17434789 17434809 -124836635 + (T)n Simple_repeat Simple_repeat 1 20 0 269 285 22 66 chr9 17436529 17436666 -124834778 - MLT1K LTR MaLR -2 586 456 185 340 28 0 chr9 17437004 17437110 -124834334 - L2 LINE L2 -28 3285 3177 294 29 0 0 chr9 17437473 17437508 -124833936 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 189 0 0 chr9 17437725 17437762 -124833682 - L2 LINE L2 -8 3305 3269 180 0 0 0 chr9 17439441 17439461 -124831983 + (A)n Simple_repeat Simple_repeat 1 20 0 369 291 111 6 chr9 17439720 17439892 -124831552 - MIR SINE MIR -14 248 59 2451 186 32 18 chr9 17440069 17440251 -124831193 + L1MB1 LINE L1 5649 5827 -362 2451 89 10 0 chr9 17440251 17440555 -124830889 - AluSg SINE Alu -3 307 1 2451 186 32 18 chr9 17440555 17440868 -124830576 + L1MB1 LINE L1 5827 6151 -38 2073 113 4 0 chr9 17440889 17441163 -124830281 + AluSx SINE Alu 1 275 -37 215 30 0 30 chr9 17441167 17441200 -124830244 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 456 337 50 20 chr9 17441340 17441542 -124829902 - L3 LINE CR1 -2 1575 1368 1460 221 51 3 chr9 17442897 17443268 -124828176 - MER97a DNA MER1_type? 0 894 506 31908 102 18 7 chr9 17443296 17449700 -124821744 + L1PA7 LINE L1 4 6485 0 762 257 87 74 chr9 17449700 17450066 -124821378 - MER97a DNA MER1_type? -402 492 122 551 256 109 14 chr9 17451810 17452021 -124819423 - L2 LINE L2 -2 3311 3081 1816 169 0 10 chr9 17452474 17452775 -124818669 + AluJb SINE Alu 1 298 -14 483 286 58 6 chr9 17453026 17453197 -124818247 + MIR SINE MIR 12 191 -71 319 314 29 0 chr9 17453272 17453374 -124818070 + L1MC4 LINE L1 7791 7895 -147 421 329 44 40 chr9 17453462 17453760 -124817684 + L2 LINE L2 2181 2479 -835 4421 225 119 72 chr9 17453760 17455436 -124816008 + MER52A LTR ERV1 1 1755 0 507 306 71 24 chr9 17455440 17455981 -124815463 + L2 LINE L2 2481 3054 -218 385 193 0 68 chr9 17457986 17458074 -124813370 + L1MB4 LINE L1 6065 6146 -34 193 304 11 33 chr9 17458302 17458394 -124813050 + MIR3 SINE MIR 101 190 -18 475 177 50 141 chr9 17458403 17458601 -124812843 + MLT1J LTR MaLR 1 180 -331 2447 115 16 19 chr9 17459250 17459615 -124811829 + THE1B LTR MaLR 1 364 0 548 261 15 36 chr9 17460520 17460715 -124810729 + MIR SINE MIR 17 207 -55 487 263 96 14 chr9 17460717 17460926 -124810518 - LTR33A LTR ERVL -1 522 297 278 49 0 24 chr9 17461096 17461137 -124810307 + (CTG)n Simple_repeat Simple_repeat 3 42 0 190 369 0 0 chr9 17461417 17461482 -124809962 + MIR SINE MIR 68 132 -76 22 0 0 0 chr9 17463366 17463388 -124808056 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr9 17464447 17464489 -124806955 + (CA)n Simple_repeat Simple_repeat 1 42 0 625 308 16 16 chr9 17464916 17465166 -124806278 + MIR SINE MIR 13 262 0 585 88 0 0 chr9 17465171 17465251 -124806193 + MADE1 DNA Mariner 1 80 0 201 339 107 8 chr9 17466032 17466153 -124805291 + MIR SINE MIR 17 149 -113 194 305 114 8 chr9 17467276 17467407 -124804037 + L2 LINE L2 3127 3271 -1 229 175 70 0 chr9 17468260 17468317 -124803127 + MLT1L LTR MaLR 220 280 -335 333 209 121 22 chr9 17468452 17468543 -124802901 + MLT1L LTR MaLR 511 610 -5 2515 174 30 4 chr9 17469074 17469545 -124801899 + L1MB7 LINE L1 5697 6179 -5 853 224 8 42 chr9 17469565 17469802 -124801642 + MIR SINE MIR 34 262 0 312 27 0 0 chr9 17470041 17470078 -124801366 + (CA)n Simple_repeat Simple_repeat 2 38 0 277 244 24 12 chr9 17470763 17470845 -124800599 - L2 LINE L2 -6 3307 3225 324 226 16 0 chr9 17471554 17471616 -124799828 + L1M3 LINE L1 5630 5692 -491 * 4440 146 31 33 chr9 17471614 17472423 -124799021 + L1MB3 LINE L1 5375 6181 -2 530 274 107 5 chr9 17474232 17474429 -124797015 - MIR SINE MIR -20 242 26 202 260 0 0 chr9 17474777 17474827 -124796617 + MIR SINE MIR 105 154 -108 353 248 36 99 chr9 17475211 17475414 -124796030 + LTR16A1 LTR ERVL 290 446 -11 201 264 64 106 chr9 17475449 17475809 -124795635 + L2 LINE L2 2253 2597 -717 451 230 92 0 chr9 17476733 17476867 -124794577 - MIR SINE MIR -58 204 61 180 152 0 0 chr9 17477171 17477204 -124794240 + L2 LINE L2 3276 3308 -5 313 275 79 32 chr9 17478002 17478191 -124793253 + L2 LINE L2 3116 3313 0 248 349 9 0 chr9 17478245 17478354 -124793090 - MIR SINE MIR -61 147 38 2045 174 17 50 chr9 17479383 17479786 -124791658 - MLT1B LTR MaLR 0 390 1 1614 157 102 41 chr9 17480530 17480873 -124790571 + MLT1A1 LTR MaLR 2 365 0 23 33 0 0 chr9 17481216 17481246 -124790198 + AT_rich Low_complexity Low_complexity 1 30 0 2022 151 0 7 chr9 17481424 17481729 -124789715 + AluJb SINE Alu 3 305 -7 287 340 50 0 chr9 17484144 17484244 -124787200 + MIR SINE MIR 19 123 -85 365 307 36 58 chr9 17484292 17484758 -124786686 + L2 LINE L2 1912 2367 -947 844 246 35 100 chr9 17484990 17485420 -124786024 - MLT1J LTR MaLR -6 505 104 313 266 0 13 chr9 17485470 17485549 -124785895 - MLT1L LTR MaLR -537 78 1 925 216 5 47 chr9 17486496 17486709 -124784735 + MER63A DNA MER1_type 1 204 -6 242 352 11 0 chr9 17487227 17487318 -124784126 + L2 LINE L2 3179 3270 -2 22 0 0 0 chr9 17487498 17487520 -124783924 + AT_rich Low_complexity Low_complexity 1 22 0 195 129 0 0 chr9 17489528 17489559 -124781885 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 335 337 93 8 chr9 17489781 17490027 -124781417 + L2 LINE L2 2546 2812 -502 286 304 120 19 chr9 17490079 17490237 -124781207 + L2 LINE L2 2899 3072 -241 193 356 46 0 chr9 17490494 17490581 -124780863 - MIR3 SINE MIR -28 180 90 2056 109 0 40 chr9 17490648 17490775 -124780669 + AluSx SINE Alu 8 138 -174 198 0 0 0 chr9 17490775 17490797 -124780647 + (CCA)n Simple_repeat Simple_repeat 1 22 0 2056 109 0 40 chr9 17490797 17490973 -124780471 + AluSx SINE Alu 138 299 -13 1486 185 45 31 chr9 17491060 17491416 -124780028 + MLT1A1 LTR MaLR 5 365 0 505 248 33 28 chr9 17491475 17491689 -124779755 + L1ME3A LINE L1 5749 5963 -207 362 296 63 40 chr9 17492611 17492910 -124778534 + MLT1J1 LTR MaLR 4 346 -104 227 167 30 45 chr9 17493118 17493184 -124778260 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 31 26 0 0 chr9 17494192 17494230 -124777214 + AT_rich Low_complexity Low_complexity 1 38 0 207 209 0 0 chr9 17494915 17494958 -124776486 + T-rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 17495466 17495487 -124775957 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 17495756 17495778 -124775666 + AT_rich Low_complexity Low_complexity 1 22 0 771 248 113 48 chr9 17495982 17496292 -124775152 - L2 LINE L2 -575 2739 2410 618 246 77 10 chr9 17496319 17496514 -124774930 - L1ME LINE L1 -302 5819 5612 43130 45 5 1 chr9 17496731 17502857 -124768587 + L1PA4 LINE L1 2 6152 -3 215 287 101 23 chr9 17502989 17503118 -124768326 - MIR SINE MIR 0 262 124 357 232 30 24 chr9 17503730 17503898 -124767546 + (TA)n Simple_repeat Simple_repeat 1 169 0 23 0 0 0 chr9 17504977 17505000 -124766444 + AT_rich Low_complexity Low_complexity 1 23 0 524 287 106 78 chr9 17505472 17505869 -124765575 - HAL1 LINE L1 -1231 1276 869 968 283 136 50 chr9 17505871 17506394 -124765050 + MLT1G1 LTR MaLR 3 570 -25 403 293 50 61 chr9 17506445 17506643 -124764801 - HAL1 LINE L1 -1633 874 679 550 303 53 14 chr9 17508550 17508758 -124762686 - MIR SINE MIR -11 251 36 1864 149 7 3 chr9 17509160 17509448 -124761996 + AluJo SINE Alu 1 289 -23 2344 86 0 10 chr9 17510491 17510794 -124760650 - AluY SINE Alu -11 300 1 2610 143 38 0 chr9 17511851 17512270 -124759174 - Tigger3(Golem) DNA MER2_type 0 3029 2595 1017 146 65 0 chr9 17512266 17512465 -124758979 - Tigger3(Golem) DNA MER2_type -537 2492 2281 * 440 198 26 103 chr9 17512462 17512504 -124758940 - Tigger3(Golem) DNA MER2_type -494 108 64 * 2281 97 0 13 chr9 17512504 17512814 -124758630 - AluSx SINE Alu -6 306 1 440 198 26 103 chr9 17512814 17512887 -124758557 - Tigger3(Golem) DNA MER2_type -538 64 2 515 253 68 37 chr9 17513279 17513441 -124758003 - MIR SINE MIR -48 214 48 2186 109 3 0 chr9 17514955 17515249 -124756195 - AluSq SINE Alu -18 295 1 25 0 0 0 chr9 17515472 17515497 -124755947 + AT_rich Low_complexity Low_complexity 1 25 0 624 307 66 53 chr9 17515703 17515876 -124755568 - MLT1I LTR MaLR -24 385 205 2354 47 47 0 chr9 17515876 17516173 -124755271 - AluY SINE Alu 0 311 1 624 307 66 53 chr9 17516173 17516318 -124755126 - MLT1I LTR MaLR -204 205 63 588 160 0 0 chr9 17518154 17518254 -124753190 - AluJ/FLAM SINE Alu -212 100 1 440 332 65 20 chr9 17518921 17519120 -124752324 + MIR SINE MIR 5 212 -50 259 224 0 0 chr9 17519205 17519254 -124752190 - MIR SINE MIR -1 261 213 23 0 0 0 chr9 17520753 17520776 -124750668 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 17521281 17521302 -124750142 + AT_rich Low_complexity Low_complexity 1 21 0 627 128 73 0 chr9 17522142 17522251 -124749193 + L1MB7 LINE L1 6068 6184 0 31 0 0 0 chr9 17522299 17522330 -124749114 + AT_rich Low_complexity Low_complexity 1 31 0 241 182 0 26 chr9 17523793 17523870 -124747574 + (TA)n Simple_repeat Simple_repeat 1 75 0 211 303 30 0 chr9 17527536 17527602 -124743842 + MIR3 SINE MIR 120 187 -21 35 41 0 0 chr9 17528251 17528300 -124743144 + AT_rich Low_complexity Low_complexity 1 49 0 205 211 18 0 chr9 17528833 17528890 -124742554 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr9 17528954 17528976 -124742468 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr9 17530862 17530905 -124740539 + AT_rich Low_complexity Low_complexity 1 43 0 11322 211 57 21 chr9 17531138 17535673 -124735771 - L1MB5 LINE L1 -36 5962 1237 10601 202 44 68 chr9 17535690 17536949 -124734495 - L1MB1 LINE L1 -1 6403 5115 1931 155 0 3 chr9 17536949 17537245 -124734199 - AluSx SINE Alu -17 295 1 10601 202 44 68 chr9 17537245 17537539 -124733905 - L1MB1 LINE L1 -1289 5115 4815 2017 133 3 7 chr9 17537539 17537840 -124733604 - AluSx SINE Alu -12 300 1 10601 202 44 68 chr9 17537840 17539159 -124732285 - L1MB1 LINE L1 -1589 4815 3466 1588 166 7 41 chr9 17539159 17539488 -124731956 - AluJo SINE Alu 0 319 1 10601 202 44 68 chr9 17539488 17540457 -124730987 - L1MB1 LINE L1 -2938 3466 2475 414 0 0 0 chr9 17540457 17540503 -124730941 + (TG)n Simple_repeat Simple_repeat 1 46 0 10601 202 44 68 chr9 17540503 17541706 -124729738 - L1MB1 LINE L1 -3929 2475 1457 3004 248 69 74 chr9 17541762 17542984 -124728460 - L1MB5 LINE L1 -4675 1216 1 303 200 14 14 chr9 17542981 17543051 -124728393 - L1M4c LINE L1 -4727 1919 1850 * 1645 207 45 61 chr9 17543083 17543591 -124727853 - L1M4c LINE L1 -5213 1329 830 608 278 0 11 chr9 17543588 17543764 -124727680 - L1M4c LINE L1 -6366 176 3 * 2204 43 0 7 chr9 17543844 17544121 -124727323 - L1PA5 LINE L1 -2 6152 5878 369 242 0 11 chr9 17544847 17544942 -124726502 - L1MC4 LINE L1 -1335 6707 6614 2825 100 28 23 chr9 17544950 17545380 -124726064 + Tigger2a DNA MER2_type 2 433 -1 237 65 0 0 chr9 17545381 17545412 -124726032 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 338 162 0 chr9 17546079 17546221 -124725223 - L2 LINE L2 -930 2384 2220 426 314 33 0 chr9 17546323 17546444 -124725000 + L2 LINE L2 3188 3312 -1 24 0 0 0 chr9 17546778 17546802 -124724642 + AT_rich Low_complexity Low_complexity 1 24 0 1668 163 77 19 chr9 17548380 17548705 -124722739 + MER2 DNA MER2_type 1 344 0 23 0 0 0 chr9 17548940 17548963 -124722481 + AT_rich Low_complexity Low_complexity 1 23 0 180 97 0 0 chr9 17549047 17549078 -124722366 + (T)n Simple_repeat Simple_repeat 1 31 0 1125 196 48 0 chr9 17549494 17549703 -124721741 - MER58A DNA MER1_type 0 224 6 33 56 0 0 chr9 17550453 17550507 -124720937 + AT_rich Low_complexity Low_complexity 1 54 0 24 53 0 0 chr9 17554551 17554589 -124716855 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr9 17555351 17555373 -124716071 + AT_rich Low_complexity Low_complexity 1 22 0 468 307 28 33 chr9 17555852 17556067 -124715377 - MIR SINE MIR 0 262 49 279 0 0 0 chr9 17556715 17556746 -124714698 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 225 339 27 0 chr9 17556747 17556859 -124714585 + MIR SINE MIR 148 262 0 5639 133 25 7 chr9 17557506 17558673 -124712771 + L1PA13 LINE L1 4978 6160 -3 564 289 44 88 chr9 17558653 17558839 -124712605 - L1ME4a LINE L1 -66 6055 5862 * 1527 148 29 0 chr9 17558839 17559117 -124712327 - L1MA4 LINE L1 0 6300 6015 564 289 44 88 chr9 17559117 17559450 -124711994 - L1ME4a LINE L1 -259 5862 5559 458 244 0 8 chr9 17559866 17559985 -124711459 - L1MA7 LINE L1 0 6291 6174 2057 97 7 45 chr9 17560003 17560311 -124711133 - AluSx SINE Alu -16 296 1 28 61 0 0 chr9 17560312 17560361 -124711083 + AT_rich Low_complexity Low_complexity 1 49 0 5308 159 42 8 chr9 17560882 17562084 -124709360 - L1MA4 LINE L1 -12 6288 5046 861 110 0 0 chr9 17562516 17562670 -124708774 + (TTCC)n Simple_repeat Simple_repeat 1 154 0 224 57 0 29 chr9 17562672 17562707 -124708737 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 1543 162 0 97 chr9 17562707 17563028 -124708416 - AluJo SINE Alu -11 291 2 297 216 120 56 chr9 17563874 17563999 -124707445 + MIR SINE MIR 120 252 -10 368 259 74 51 chr9 17564264 17564465 -124706979 + MIR SINE MIR 4 207 -55 5582 145 59 4 chr9 17565735 17566428 -124705016 + L1MA9 LINE L1 4928 5581 -731 306 0 0 0 chr9 17566428 17566462 -124704982 + (CA)n Simple_repeat Simple_repeat 2 35 0 5582 145 59 4 chr9 17566462 17566931 -124704513 + L1MA9 LINE L1 5581 6287 -25 487 238 10 0 chr9 17567158 17567259 -124704185 - MER93a LTR ERV1 -2 400 299 26 88 0 0 chr9 17567371 17567439 -124704005 + AT_rich Low_complexity Low_complexity 1 68 0 608 173 30 95 chr9 17568530 17568622 -124702822 + MER46C DNA MER2_type 176 254 -84 1904 147 0 10 chr9 17568622 17568915 -124702529 - AluSx SINE Alu 0 312 23 608 173 30 95 chr9 17568915 17568990 -124702454 + MER46C DNA MER2_type 254 332 -6 217 254 18 0 chr9 17569987 17570042 -124701402 - L2 LINE L2 -211 3061 3006 199 227 27 93 chr9 17570170 17570245 -124701199 + MIR3 SINE MIR 132 201 -7 333 127 0 0 chr9 17570382 17570445 -124700999 + L1MA10 LINE L1 6271 6333 -1 2722 143 0 7 chr9 17571798 17572239 -124699205 - L1PA11 LINE L1 -1914 4232 3795 6352 146 19 2 chr9 17572239 17574125 -124697319 + L1PA11 LINE L1 4247 6174 0 1105 285 152 11 chr9 17574126 17574658 -124696786 + L2 LINE L2 2707 3313 0 526 291 73 7 chr9 17577552 17577703 -124693741 + MIR SINE MIR 22 182 -80 196 247 118 24 chr9 17577716 17577801 -124693643 + MIR SINE MIR 143 235 -27 3799 205 75 51 chr9 17578373 17579717 -124691727 - L1MD2 LINE L1 -15 6344 4968 1512 244 66 17 chr9 17579725 17580301 -124691143 + MLT1E3 LTR MaLR 1 608 -16 187 247 13 65 chr9 17580366 17580443 -124691001 - L2 LINE L2 -2278 1036 964 284 236 181 28 chr9 17580635 17580779 -124690665 - Charlie7 DNA MER1_type -1 2611 2446 1951 170 29 10 chr9 17580819 17581202 -124690242 + L1MC1 LINE L1 5944 6333 0 556 304 96 8 chr9 17581309 17581549 -124689895 + Charlie7 DNA MER1_type 96 356 -2256 1344 237 157 23 chr9 17581549 17581921 -124689523 + Charlie7 DNA MER1_type 1479 1800 -812 312 27 0 0 chr9 17581921 17581958 -124689486 + (TA)n Simple_repeat Simple_repeat 2 38 0 1344 237 157 23 chr9 17581958 17582184 -124689260 + Charlie7 DNA MER1_type 1800 2157 -455 278 119 0 0 chr9 17582184 17582226 -124689218 - MSTA LTR MaLR 0 428 387 42530 48 7 0 chr9 17582228 17588334 -124683110 + L1PA4 LINE L1 7 6151 -4 782 201 165 27 chr9 17588334 17588646 -124682798 - MSTA LTR MaLR -27 401 1 268 169 62 0 chr9 17588741 17588806 -124682638 + Charlie7 DNA MER1_type 2278 2346 -266 23 33 0 0 chr9 17589342 17589372 -124682072 + AT_rich Low_complexity Low_complexity 1 30 0 2333 174 70 0 chr9 17589502 17589843 -124681601 - L1PB4 LINE L1 -2 6154 5771 207 0 0 0 chr9 17589843 17589866 -124681578 + (CA)n Simple_repeat Simple_repeat 1 23 0 2333 174 70 0 chr9 17589866 17589983 -124681461 - L1PB4 LINE L1 -385 5771 5664 1219 173 4 0 chr9 17589992 17590217 -124681227 - L1PB4 LINE L1 -1254 4892 4667 15196 100 10 1 chr9 17590217 17593228 -124678216 - L1PA7 LINE L1 -6 6463 3432 10804 109 5 1 chr9 17593228 17594766 -124676678 - L1PA7 LINE L1 -4910 1551 8 4579 184 17 2 chr9 17594775 17595697 -124675747 - L1PB4 LINE L1 -1478 4668 3733 35 0 0 0 chr9 17595769 17595804 -124675640 + AT_rich Low_complexity Low_complexity 1 35 0 362 196 62 27 chr9 17595901 17596013 -124675431 - MIR SINE MIR -10 252 137 522 333 46 17 chr9 17597719 17597956 -124673488 + MIR SINE MIR 16 259 -3 270 298 16 65 chr9 17597956 17598080 -124673364 - MIR SINE MIR -66 196 79 216 333 30 117 chr9 17598659 17598890 -124672554 - L2 LINE L2 -84 3188 2978 676 221 22 144 chr9 17600925 17601292 -124670152 + L2 LINE L2 2987 3308 -5 2583 112 35 7 chr9 17602198 17602858 -124668586 - L1MA8 LINE L1 -592 5699 5025 2988 153 40 17 chr9 17602860 17603454 -124667990 + L1MA8 LINE L1 5680 6287 -4 211 286 0 0 chr9 17603656 17603726 -124667718 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 30 0 0 chr9 17603743 17603776 -124667668 + AT_rich Low_complexity Low_complexity 1 33 0 261 268 14 0 chr9 17603799 17603870 -124667574 - MLT1J LTR MaLR -316 195 124 409 303 136 23 chr9 17603919 17604140 -124667304 + MIR SINE MIR 17 262 0 288 354 84 17 chr9 17604307 17604652 -124666792 + L2 LINE L2 1718 2085 -1229 352 330 118 44 chr9 17604672 17605284 -124666160 - L2 LINE L2 0 3313 2650 246 298 141 0 chr9 17605299 17605420 -124666024 - L2 LINE L2 -851 2463 2326 186 298 96 58 chr9 17605628 17605732 -124665712 - L2 LINE L2 -45 3268 3161 324 278 225 31 chr9 17606244 17606435 -124665009 + MIR SINE MIR 25 252 -10 192 356 0 0 chr9 17607681 17607740 -124663704 + MIR SINE MIR 1 59 -203 237 299 183 52 chr9 17607786 17608131 -124663313 - L2 LINE L2 -51 3221 2832 236 229 55 0 chr9 17608683 17608792 -124662652 + (TA)n Simple_repeat Simple_repeat 1 115 0 268 358 89 46 chr9 17609030 17609466 -124661978 + L2 LINE L2 2286 2740 -574 369 161 0 0 chr9 17610397 17610483 -124660961 + L1M4 LINE L1 4954 5039 -1107 1084 172 18 0 chr9 17610497 17610718 -124660726 - L1MA6 LINE L1 -5 6295 6071 10420 162 56 18 chr9 17610720 17613415 -124658029 - L1MA6 LINE L1 -607 5693 2892 3990 171 53 21 chr9 17613408 17613822 -124657622 + L1MB5 LINE L1 4954 5354 -820 * 1678 165 18 4 chr9 17613822 17614094 -124657350 + AluJo SINE Alu 37 312 0 3990 171 53 21 chr9 17614094 17614863 -124656581 + L1MB5 LINE L1 5354 6173 -1 524 337 15 35 chr9 17614922 17615124 -124656320 + MIR3 SINE MIR 2 199 -9 22 0 0 0 chr9 17615215 17615237 -124656207 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr9 17617013 17617044 -124654400 + AT_rich Low_complexity Low_complexity 1 31 0 493 295 98 12 chr9 17617768 17617941 -124653503 - MIR SINE MIR -60 202 15 448 215 43 11 chr9 17620439 17620532 -124650912 + FLAM_A SINE Alu 20 115 -27 494 256 83 0 chr9 17620568 17620689 -124650755 + MIR3 SINE MIR 57 187 -21 238 321 64 18 chr9 17621613 17621722 -124649722 + L2 LINE L2 2872 2985 -287 269 295 48 38 chr9 17623226 17623331 -124648113 + L2 LINE L2 3167 3272 0 346 321 25 3 chr9 17624114 17624300 -124647144 - MIR SINE MIR -5 257 26 609 14 0 0 chr9 17624501 17624571 -124646873 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 7769 16 0 0 chr9 17624571 17625735 -124645709 - L1PA3 LINE L1 -10 6145 4980 1246 126 0 0 chr9 17625846 17626021 -124645423 + AluSg/x SINE Alu 137 311 -1 196 268 99 0 chr9 17626021 17626092 -124645352 + MIR SINE MIR 150 227 -35 192 77 0 0 chr9 17627999 17628025 -124643419 + (A)n Simple_repeat Simple_repeat 1 26 0 182 317 99 19 chr9 17628416 17628577 -124642867 + L2 LINE L2 2623 2796 -518 242 216 0 0 chr9 17628594 17628645 -124642799 + MLT1F1 LTR MaLR 17 67 -500 200 313 171 9 chr9 17628711 17628928 -124642516 + L2 LINE L2 92 343 -2971 292 256 23 0 chr9 17628929 17629015 -124642429 + MER112 DNA MER1_type 164 251 -9 396 263 63 63 chr9 17629384 17629559 -124641885 + MIR SINE MIR 60 234 -28 413 257 99 13 chr9 17629583 17629735 -124641709 - Charlie8 DNA MER1_type -2234 183 19 477 272 78 19 chr9 17631212 17631418 -124640026 - MIR SINE MIR -33 229 12 232 262 173 30 chr9 17631478 17631646 -124639798 - L2 LINE L2 -87 3185 2994 202 305 138 4 chr9 17632619 17632754 -124638690 - MIR3 SINE MIR -14 248 86 471 277 209 0 chr9 17633601 17633850 -124637594 + Charlie2 DNA MER1_type 1 301 -2481 416 240 156 28 chr9 17633975 17634154 -124637290 + Charlie2a DNA MER1_type 1462 1663 -1199 383 246 65 22 chr9 17634173 17634311 -124637133 + Charlie2a DNA MER1_type 2718 2861 -1 832 198 36 1 chr9 17635317 17635629 -124635815 + MLT1A1 LTR MaLR 1 365 0 1967 147 0 45 chr9 17636120 17636434 -124635010 + AluJb SINE Alu 1 300 -12 183 238 0 79 chr9 17638282 17638345 -124633099 - L2 LINE L2 -94 3219 3162 195 42 0 0 chr9 17638446 17638470 -124632974 - MIR SINE MIR -63 145 122 1369 109 17 30 chr9 17638477 17638707 -124632737 - THE1C LTR MaLR 0 375 149 21 0 0 0 chr9 17639397 17639418 -124632026 + AT_rich Low_complexity Low_complexity 1 21 0 213 94 0 0 chr9 17640218 17640250 -124631194 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 356 242 61 8 chr9 17640359 17640491 -124630953 - L1ME4a LINE L1 -2 6119 5981 2120 226 43 17 chr9 17640558 17641169 -124630275 + MLT1E3 LTR MaLR 1 624 0 1439 196 122 26 chr9 17642325 17642743 -124628701 - MLT1C LTR MaLR -9 458 1 210 222 0 56 chr9 17642880 17642934 -124628510 + L2 LINE L2 3262 3312 -1 306 73 0 0 chr9 17644186 17644227 -124627217 + (CA)n Simple_repeat Simple_repeat 2 42 0 219 114 0 0 chr9 17644474 17644509 -124626935 + (CAG)n Simple_repeat Simple_repeat 1 35 0 315 271 0 0 chr9 17645822 17645892 -124625552 + MIR SINE MIR 79 148 -114 248 245 179 32 chr9 17645917 17646061 -124625383 + MIR SINE MIR 5 163 -77 2353 157 39 2 chr9 17646342 17646657 -124624787 - Tigger2a DNA MER2_type -2280 428 93 429 20 0 0 chr9 17646657 17646707 -124624737 + (GGA)n Simple_repeat Simple_repeat 2 51 0 2353 157 39 2 chr9 17646707 17646804 -124624640 - Tigger2a DNA MER2_type -2615 93 1 614 353 37 12 chr9 17646890 17647134 -124624310 - MIR SINE MIR -9 253 4 319 324 75 29 chr9 17647243 17647416 -124624028 - MIR SINE MIR -74 188 8 282 258 32 21 chr9 17648260 17648353 -124623091 + MIR SINE MIR 12 105 -157 455 249 29 35 chr9 17648737 17648910 -124622534 + Charlie8 DNA MER1_type 95 266 -2151 322 205 133 12 chr9 17648999 17649082 -124622362 + MER5A DNA MER1_type 4 96 -93 1134 145 65 0 chr9 17649162 17649348 -124622096 + MER58A DNA MER1_type 27 224 0 427 336 103 11 chr9 17650458 17650720 -124620724 - L3b LINE CR1 -194 1389 1104 356 304 114 6 chr9 17650966 17651124 -124620320 - MIR SINE MIR 0 262 88 413 200 38 0 chr9 17651236 17651316 -124620128 + L2 LINE L2 3190 3272 0 2662 102 3 3 chr9 17651415 17651776 -124619668 + THE1B LTR MaLR 1 361 -3 385 266 22 44 chr9 17651796 17651953 -124619491 + MER5A DNA MER1_type 7 168 -18 1046 233 67 75 chr9 17651956 17652446 -124618998 + LTR33 LTR ERVL 32 517 -4 236 296 217 0 chr9 17653798 17653950 -124617494 - MIR SINE MIR -69 193 9 1463 294 94 6 chr9 17654207 17654718 -124616726 - MLT1L LTR MaLR -57 558 3 322 282 23 30 chr9 17654942 17655073 -124616371 - L1ME LINE L1 -352 5769 5640 303 279 197 33 chr9 17655085 17655329 -124616115 - L1ME LINE L1 -588 5582 5299 676 207 132 24 chr9 17655969 17656178 -124615266 + MIR SINE MIR 33 261 -1 210 354 186 0 chr9 17656187 17656300 -124615144 - L2 LINE L2 -2 3270 3137 193 389 21 7 chr9 17656665 17656809 -124614635 - L2 LINE L2 -659 2655 2510 664 251 78 33 chr9 17658094 17658337 -124613107 - L2 LINE L2 0 3313 3060 1081 234 28 16 chr9 17658337 17658589 -124612855 - MLT1E1 LTR MaLR 0 654 400 439 245 69 24 chr9 17658632 17658824 -124612620 - MLT1E1 LTR MaLR -402 252 1 593 314 136 9 chr9 17658827 17659306 -124612138 - L2 LINE L2 -252 3061 2516 940 263 24 24 chr9 17659324 17659571 -124611873 + MIR SINE MIR 12 258 -4 208 302 160 47 chr9 17659603 17659709 -124611735 - L2 LINE L2 -805 2509 2392 1815 169 25 19 chr9 17659941 17660303 -124611141 + MLT1A1 LTR MaLR 2 365 0 14559 200 40 9 chr9 17660911 17667241 -124604203 + L1PB1 LINE L1 6 6864 -3 26 0 0 0 chr9 17667241 17667267 -124604177 + AT_rich Low_complexity Low_complexity 1 26 0 352 337 20 65 chr9 17667284 17667483 -124603961 + L2 LINE L2 3027 3216 -56 1055 194 38 0 chr9 17667486 17667672 -124603772 - MLT1A1 LTR MaLR 0 365 173 340 286 99 31 chr9 17667763 17667924 -124603520 + HERV16 LTR ERVL 137 308 -4688 4068 177 91 29 chr9 17668086 17668957 -124602487 + MER45B DNA AcHobo 116 1040 0 221 296 179 34 chr9 17669082 17669261 -124602183 + MIR SINE MIR 58 262 0 4595 113 2 2 chr9 17669519 17670154 -124601290 + MER41B LTR ERV1 1 635 0 343 61 0 0 chr9 17672880 17672929 -124598515 + Alu SINE Alu 251 299 -1 2225 96 3 0 chr9 17673077 17673380 -124598064 - AluSx SINE Alu -8 304 1 490 282 77 28 chr9 17675866 17676047 -124595397 + MIR SINE MIR 73 262 0 2264 219 98 25 chr9 17676387 17676963 -124594481 - L1ME2 LINE L1 -9 6155 5530 216 0 0 0 chr9 17676963 17676987 -124594457 + (CA)n Simple_repeat Simple_repeat 1 24 0 2264 219 98 25 chr9 17676987 17677022 -124594422 - L1ME2 LINE L1 -634 5530 5499 862 129 18 61 chr9 17677073 17677236 -124594208 - MER97b DNA MER1_type? -874 179 24 714 258 63 0 chr9 17677262 17677502 -124593942 - L1ME2 LINE L1 -704 5470 5216 424 254 9 18 chr9 17678265 17678379 -124593065 + MIR SINE MIR 148 260 -2 389 49 16 0 chr9 17678720 17678781 -124592663 - L1MA7 LINE L1 -1 6290 6229 336 228 51 13 chr9 17679121 17679200 -124592244 + MIR SINE MIR 34 115 -93 923 113 28 0 chr9 17679712 17679854 -124591590 + AluSg/x SINE Alu 160 305 -7 228 67 0 0 chr9 17680385 17680415 -124591029 + (TG)n Simple_repeat Simple_repeat 2 31 0 277 290 43 36 chr9 17682752 17682890 -124588554 - MIR3 SINE MIR -66 142 4 505 276 33 20 chr9 17683056 17683208 -124588236 + MIR SINE MIR 95 248 -14 372 253 67 62 chr9 17683469 17683647 -124587797 - MIR SINE MIR -11 251 74 1936 178 27 0 chr9 17683996 17684334 -124587110 + MLT1A1 LTR MaLR 7 353 -12 211 287 164 41 chr9 17684687 17685028 -124586416 + L2 LINE L2 2425 2807 -507 293 266 9 55 chr9 17685717 17685826 -124585618 + MIR3 SINE MIR 57 160 -48 266 308 0 110 chr9 17686732 17686766 -124584678 + MIR SINE MIR 20 56 -206 2138 96 0 3 chr9 17686766 17687059 -124584385 - AluSc SINE Alu -17 292 1 266 308 0 110 chr9 17687059 17687170 -124584274 + MIR SINE MIR 56 149 -113 1231 273 54 14 chr9 17737197 17737567 -124533877 - MLT1I LTR MaLR 0 409 25 410 232 84 112 chr9 17737643 17737988 -124533456 + LTR67 LTR ERVL 153 556 -1 39 68 0 0 chr9 17738391 17738465 -124532979 + AT_rich Low_complexity Low_complexity 1 74 0 234 0 0 0 chr9 17738474 17738500 -124532944 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 244 325 53 9 chr9 17738755 17738869 -124532575 + MIR SINE MIR 117 235 -27 432 0 0 0 chr9 17739100 17739148 -124532296 + (CA)n Simple_repeat Simple_repeat 2 49 0 894 176 110 144 chr9 17739302 17739711 -124531733 - MSTD LTR MaLR -1 395 1 243 103 0 0 chr9 17739712 17739751 -124531693 + (TC)n Simple_repeat Simple_repeat 2 40 0 744 281 41 15 chr9 17740967 17741237 -124530207 - L1ME1 LINE L1 -1 6165 5889 2770 255 84 18 chr9 17741238 17742353 -124529091 - L1MDa LINE L1 -4318 1762 574 1205 237 153 27 chr9 17742353 17742725 -124528719 - MLT1E LTR MaLR 0 593 175 251 300 100 17 chr9 17742794 17742914 -124528530 - MLT1E LTR MaLR -520 134 5 2639 129 39 9 chr9 17742915 17743350 -124528094 + L1MB3 LINE L1 5729 6176 -7 233 294 64 54 chr9 17743384 17743588 -124527856 - L1MDa LINE L1 -5477 593 388 1240 153 70 0 chr9 17747598 17747813 -124523631 - L1PA16 LINE L1 -9 6157 5928 185 32 0 65 chr9 17748675 17748706 -124522738 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 488 59 15 0 chr9 17751659 17751727 -124519717 + (GA)n Simple_repeat Simple_repeat 2 70 0 192 158 0 0 chr9 17756097 17756135 -124515309 + A-rich Low_complexity Low_complexity 1 38 0 216 214 0 0 chr9 17757498 17757540 -124513904 + T-rich Low_complexity Low_complexity 1 42 0 384 59 0 0 chr9 17757624 17757675 -124513769 + (TG)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr9 17757898 17757925 -124513519 + (CA)n Simple_repeat Simple_repeat 1 27 0 237 196 0 0 chr9 17759688 17759744 -124511700 + (TA)n Simple_repeat Simple_repeat 1 56 0 273 98 0 0 chr9 17760350 17760391 -124511053 + (GA)n Simple_repeat Simple_repeat 2 42 0 205 293 37 0 chr9 17763430 17763512 -124507932 + (CATATA)n Simple_repeat Simple_repeat 6 90 0 * 221 250 0 0 chr9 17763466 17763514 -124507930 + (TATG)n Simple_repeat Simple_repeat 1 48 0 977 175 0 18 chr9 17765163 17765329 -124506115 - AluSx SINE Alu -149 163 1 6244 13 0 5 chr9 17765956 17766715 -124504729 + L1HS LINE L1 5400 6154 -1 1066 149 11 6 chr9 17766901 17767075 -124504369 - AluJb SINE Alu -1 311 137 471 287 84 84 chr9 17767186 17767257 -124504187 - MIR SINE MIR 0 262 192 2362 93 10 0 chr9 17767257 17767559 -124503885 - AluSc SINE Alu -2 307 3 471 287 84 84 chr9 17767559 17767738 -124503706 - MIR SINE MIR -69 193 12 2537 104 3 3 chr9 17768095 17768450 -124502994 + THE1A LTR MaLR 1 355 0 11277 99 8 13 chr9 17768450 17768860 -124502584 + THE1A-int LTR MaLR 1 412 -1168 2501 85 0 0 chr9 17768860 17769167 -124502277 - AluY SINE Alu -4 307 1 11277 99 8 13 chr9 17769167 17770163 -124501281 + THE1A-int LTR MaLR 412 1399 -181 2379 97 0 0 chr9 17770163 17770462 -124500982 - AluSg SINE Alu -11 299 1 11277 99 8 13 chr9 17770462 17770643 -124500801 + THE1A-int LTR MaLR 1399 1580 0 2702 87 0 3 chr9 17770643 17770999 -124500445 + THE1A LTR MaLR 1 355 0 25 0 0 0 chr9 17772319 17772344 -124499100 + AT_rich Low_complexity Low_complexity 1 25 0 196 329 71 0 chr9 17772344 17772414 -124499030 + MIR SINE MIR 53 127 -81 2338 104 7 0 chr9 17772463 17772770 -124498674 + AluSx SINE Alu 1 309 -3 432 294 91 91 chr9 17775297 17775606 -124495838 + L2 LINE L2 2964 3272 0 664 211 0 14 chr9 17776000 17776142 -124495302 + FRAM SINE Alu 20 159 -17 675 311 122 12 chr9 17776928 17777272 -124494172 - L3 LINE CR1 -141 1436 1055 2318 107 7 0 chr9 17777840 17778150 -124493294 + AluSx SINE Alu 1 312 0 265 275 46 9 chr9 17778362 17778471 -124492973 - L1MC4 LINE L1 -1 8041 7929 497 236 93 125 chr9 17778876 17779092 -124492352 - MIR SINE MIR -16 246 38 4079 143 38 57 chr9 17779195 17780170 -124491274 + pTR5 LTR ERV1 741 2025 -413 292 224 31 20 chr9 17780170 17780268 -124491176 + LTR30 LTR ERV1 544 642 -80 1330 118 68 0 chr9 17780269 17780489 -124490955 + LTR12 LTR ERV1 480 714 0 405 272 69 52 chr9 17780725 17780898 -124490546 + MIR SINE MIR 82 257 -5 23 0 0 0 chr9 17781180 17781203 -124490241 + AT_rich Low_complexity Low_complexity 1 23 0 333 62 0 0 chr9 17783954 17784002 -124487442 + (CA)n Simple_repeat Simple_repeat 2 49 0 1108 179 66 14 chr9 17784492 17784704 -124486740 + AluJo SINE Alu 85 307 -5 1606 171 61 0 chr9 17785599 17785879 -124485565 - AluJo SINE Alu -15 297 1 187 247 79 90 chr9 17785944 17786033 -124485411 - MIR SINE MIR -114 148 61 626 190 110 17 chr9 17787840 17788077 -124483367 - MER3 DNA MER1_type 0 2624 2366 522 149 149 0 chr9 17788077 17788184 -124483260 + MER3 DNA MER1_type 87 209 0 2808 59 3 0 chr9 17788936 17789290 -124482154 - THE1A LTR MaLR 0 355 1 231 291 36 0 chr9 17789401 17789456 -124481988 + L2 LINE L2 3123 3179 -93 185 241 103 83 chr9 17790356 17790501 -124480943 - L2 LINE L2 -891 2423 2276 319 353 152 31 chr9 17792371 17792785 -124478659 - L2 LINE L2 -1 3271 2808 686 286 158 53 chr9 17792789 17792960 -124478484 - L2 LINE L2 -2 3311 3159 2280 117 0 0 chr9 17792960 17793259 -124478185 - AluSc SINE Alu -10 299 1 686 286 158 53 chr9 17793259 17793587 -124477857 - L2 LINE L2 -154 3159 2867 1682 65 0 0 chr9 17793587 17793801 -124477643 + L1PA6 LINE L1 5941 6154 0 686 286 158 53 chr9 17793801 17793972 -124477472 - L2 LINE L2 -446 2867 2570 183 284 15 30 chr9 17794195 17794262 -124477182 + L3 LINE CR1 902 967 -610 454 273 62 31 chr9 17794359 17794520 -124476924 + MER91A DNA MER1_type 29 194 -2 2466 105 0 0 chr9 17794704 17795017 -124476427 - AluSq SINE Alu 0 313 1 233 0 62 0 chr9 17795035 17795067 -124476377 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr9 17795443 17795465 -124475979 + AT_rich Low_complexity Low_complexity 1 22 0 229 232 27 80 chr9 17796083 17796195 -124475249 - MIR SINE MIR -67 195 90 468 320 23 27 chr9 17796269 17796488 -124474956 - L2 LINE L2 -4 3309 3092 694 110 0 71 chr9 17796684 17796787 -124474657 + L1PB1 LINE L1 5678 5772 -379 375 23 0 0 chr9 17796787 17796831 -124474613 + (TG)n Simple_repeat Simple_repeat 2 45 0 694 110 0 71 chr9 17796831 17796854 -124474590 + L1PB1 LINE L1 5772 5795 -356 245 52 36 119 chr9 17796869 17797063 -124474381 + (TA)n Simple_repeat Simple_repeat 2 179 0 2257 122 14 11 chr9 17797112 17797480 -124473964 + L1PB1 LINE L1 5782 6150 -1 206 313 0 0 chr9 17797587 17797635 -124473809 + MIR SINE MIR 32 79 -129 520 286 82 48 chr9 17797916 17798147 -124473297 - MIR SINE MIR -1 261 23 27 0 0 0 chr9 17798174 17798201 -124473243 + AT_rich Low_complexity Low_complexity 1 27 0 2231 132 0 3 chr9 17798329 17798639 -124472805 - AluSx SINE Alu -3 309 1 914 275 14 0 chr9 17799771 17799978 -124471466 + MIR SINE MIR 7 216 -46 1473 199 59 4 chr9 17800900 17801171 -124470273 + AluJo SINE Alu 12 297 -15 209 280 67 13 chr9 17802893 17802968 -124468476 + MIR SINE MIR 68 146 -62 990 186 0 0 chr9 17803509 17803681 -124467763 + FAM SINE Alu 1 172 -3 508 269 108 21 chr9 17803771 17803957 -124467487 + MIR SINE MIR 5 206 -56 263 29 0 0 chr9 17805065 17805099 -124466345 - AluSq/x SINE Alu -181 121 88 218 28 0 56 chr9 17805099 17805135 -124466309 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1963 115 4 11 chr9 17805135 17805414 -124466030 - AluSq SINE Alu -36 277 1 1083 115 29 40 chr9 17805611 17805785 -124465659 - AluSg/x SINE Alu -5 305 134 2341 110 0 0 chr9 17805787 17806087 -124465357 - AluSg SINE Alu -10 300 1 249 376 32 0 chr9 17806368 17806461 -124464983 - L2 LINE L2 -40 3232 3137 1717 174 20 30 chr9 17807182 17807486 -124463958 - AluJo SINE Alu -11 301 1 1882 174 0 7 chr9 17809466 17809770 -124461674 - AluJo SINE Alu -9 303 2 2052 142 0 10 chr9 17809781 17810091 -124461353 - AluJo SINE Alu -5 307 1 237 65 0 0 chr9 17810836 17810867 -124460577 + (CA)n Simple_repeat Simple_repeat 2 32 0 2009 144 20 0 chr9 17811214 17811520 -124459924 + AluSx SINE Alu 1 312 0 2470 65 7 0 chr9 17811657 17811964 -124459480 - AluY SINE Alu -2 309 1 192 40 0 0 chr9 17813145 17813170 -124458274 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr9 17814078 17814103 -124457341 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr9 17815083 17815118 -124456326 + AT_rich Low_complexity Low_complexity 1 35 0 38 22 0 0 chr9 17816462 17816507 -124454937 + AT_rich Low_complexity Low_complexity 1 45 0 1629 176 29 23 chr9 17816507 17816813 -124454631 + AluJo SINE Alu 1 308 -4 180 0 0 0 chr9 17816943 17816963 -124454481 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1950 122 51 0 chr9 17816965 17817261 -124454183 - AluSq SINE Alu -2 311 1 561 291 44 0 chr9 17818034 17818192 -124453252 - MIR SINE MIR -45 217 53 2221 82 0 0 chr9 17821549 17821865 -124449579 + AluY SINE Alu 1 316 0 1889 76 35 111 chr9 17822005 17822321 -124449123 + AluSq SINE Alu 1 292 -21 1831 150 7 0 chr9 17823151 17823425 -124448019 + AluJb SINE Alu 1 276 -36 202 185 37 0 chr9 17823616 17823670 -124447774 + A-rich Low_complexity Low_complexity 2 57 0 311 199 71 35 chr9 17823781 17823922 -124447522 + L1MC4a LINE L1 5313 5458 -2350 579 164 82 8 chr9 17823994 17824116 -124447328 + L1MC4a LINE L1 5771 5901 -1907 234 0 0 0 chr9 17824827 17824853 -124446591 + (T)n Simple_repeat Simple_repeat 1 26 0 236 371 86 63 chr9 17825115 17825430 -124446014 - L2 LINE L2 -2 3270 2949 1942 116 11 21 chr9 17826020 17826305 -124445139 - AluJo SINE Alu -19 293 12 2286 107 0 3 chr9 17827221 17827519 -124443925 + AluSq SINE Alu 1 297 -16 1002 85 0 0 chr9 17828133 17828263 -124443181 + Alu SINE Alu 171 300 -10 2586 181 52 17 chr9 17829041 17829584 -124441860 - MER68 LTR ERV1 0 562 1 279 262 0 48 chr9 17830459 17830543 -124440901 - MIR SINE MIR 0 262 183 215 175 0 63 chr9 17832013 17832053 -124439391 + A-rich Low_complexity Low_complexity 2 38 -22 1953 150 7 0 chr9 17832053 17832339 -124439105 + AluSx SINE Alu 1 288 -24 215 175 0 63 chr9 17832339 17832361 -124439083 + A-rich Low_complexity Low_complexity 38 60 0 294 327 95 38 chr9 17832385 17832596 -124438848 + MIR SINE MIR 34 256 -6 2776 13 0 0 chr9 17835004 17835308 -124436136 - AluYa5 SINE Alu -7 304 1 307 162 0 4 chr9 17835471 17835531 -124435913 + Alu SINE Alu 1 44 -264 1998 159 7 0 chr9 17835531 17835833 -124435611 + AluSx SINE Alu 6 309 -3 29 28 0 0 chr9 17836078 17836114 -124435330 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr9 17836266 17836296 -124435148 + AT_rich Low_complexity Low_complexity 1 30 0 693 119 10 0 chr9 17836358 17836459 -124434985 - AluSq SINE Alu -102 211 110 184 349 15 83 chr9 17836651 17836783 -124434661 + L2 LINE L2 2657 2779 -535 2024 144 7 0 chr9 17836866 17837165 -124434279 + AluSx SINE Alu 1 301 -11 296 26 0 0 chr9 17837531 17837570 -124433874 + L1P LINE L1 4129 4167 -1979 1740 89 0 0 chr9 17837775 17837988 -124433456 + AluSg SINE Alu 1 213 -97 711 193 48 30 chr9 17838175 17838341 -124433103 - AluSg/x SINE Alu -8 302 134 353 329 91 18 chr9 17838672 17838891 -124432553 + MIR SINE MIR 28 262 0 236 228 53 0 chr9 17838909 17838966 -124432478 - MIR SINE MIR -91 171 112 1930 111 55 0 chr9 17839297 17839568 -124431876 + AluSx SINE Alu 2 287 -25 185 278 0 19 chr9 17839635 17839689 -124431755 - L2 LINE L2 0 3272 3220 409 304 65 30 chr9 17839951 17840119 -124431325 + MIR3 SINE MIR 19 192 -16 305 273 124 50 chr9 17840370 17840612 -124430832 - L2 LINE L2 -353 2961 2702 21 0 0 0 chr9 17841705 17841726 -124429718 + AT_rich Low_complexity Low_complexity 1 21 0 2071 143 24 21 chr9 17847998 17848334 -124423110 - MER1B DNA MER1_type 0 337 1 28 0 0 0 chr9 17851490 17851518 -124419926 + AT_rich Low_complexity Low_complexity 1 28 0 1614 231 81 21 chr9 17855035 17855211 -124416233 + L1MC4a LINE L1 7209 7373 -435 2582 108 11 0 chr9 17855211 17855571 -124415873 + THE1B LTR MaLR 1 364 0 1614 231 81 21 chr9 17855571 17855926 -124415518 + L1MC4a LINE L1 7373 7772 -36 180 376 20 0 chr9 17856471 17856572 -124414872 - MIR SINE MIR -126 136 34 1423 188 89 0 chr9 17857364 17857635 -124413809 + AluJo SINE Alu 1 295 -17 1588 119 0 9 chr9 17859144 17859371 -124412073 + AluSq SINE Alu 1 225 -88 180 0 0 0 chr9 17859385 17859405 -124412039 + (A)n Simple_repeat Simple_repeat 1 20 0 1196 209 110 11 chr9 17859937 17860301 -124411143 + L1ME1 LINE L1 5762 6161 -5 362 156 26 0 chr9 17860588 17860665 -124410779 + Charlie7 DNA MER1_type 2532 2610 -2 535 268 62 18 chr9 17861329 17861553 -124409891 + L1MC4a LINE L1 5616 5849 -1959 716 213 92 42 chr9 17861561 17861976 -124409468 - MLT1C LTR MaLR 0 467 21 31 0 0 0 chr9 17862364 17862395 -124409049 + AT_rich Low_complexity Low_complexity 1 31 0 1833 139 48 20 chr9 17862558 17862853 -124408591 - AluSx SINE Alu -9 303 1 22 35 0 0 chr9 17864531 17864560 -124406884 + AT_rich Low_complexity Low_complexity 1 29 0 1564 175 18 94 chr9 17865228 17865662 -124405782 - MER63 DNA MER1_type 0 1060 660 258 256 48 77 chr9 17868479 17868647 -124402797 + MLT1H LTR MaLR 123 285 -264 196 268 54 18 chr9 17871688 17871744 -124399700 + L2 LINE L2 3144 3201 -71 1495 174 0 52 chr9 17871944 17872232 -124399212 + AluJb SINE Alu 1 273 -39 858 156 6 11 chr9 17872239 17872419 -124399025 + GA-rich Low_complexity Low_complexity 2 180 0 1174 76 6 6 chr9 17872425 17872597 -124398847 + (GGAAA)n Simple_repeat Simple_repeat 4 175 0 207 0 0 0 chr9 17872870 17872893 -124398551 + (T)n Simple_repeat Simple_repeat 1 23 0 223 313 16 0 chr9 17875073 17875137 -124396307 + GA-rich Low_complexity Low_complexity 1 65 0 2043 135 30 3 chr9 17877249 17877546 -124393898 + AluSx SINE Alu 1 305 -7 224 361 69 15 chr9 17877671 17877801 -124393643 - MIR SINE MIR -123 139 3 234 273 0 0 chr9 17877814 17877869 -124393575 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 538 311 85 14 chr9 17878048 17878260 -124393184 - MIR SINE MIR -2 260 34 247 272 58 58 chr9 17879634 17879737 -124391707 - L2 LINE L2 -16 3256 3154 262 348 62 29 chr9 17880334 17880544 -124390900 - L2 LINE L2 -256 3057 2841 2198 133 3 0 chr9 17881109 17881418 -124390026 - AluSx SINE Alu -2 310 1 34 0 0 0 chr9 17882702 17882736 -124388708 + AT_rich Low_complexity Low_complexity 1 34 0 1523 67 95 0 chr9 17882870 17883080 -124388364 - MER30 DNA MER1_type 0 230 1 2348 65 3 16 chr9 17887729 17888035 -124383409 - AluY SINE Alu -9 302 1 1848 156 10 10 chr9 17888227 17888534 -124382910 + AluJb SINE Alu 1 307 -5 716 204 15 68 chr9 17888560 17888730 -124382714 - MER58A DNA MER1_type -2196 224 65 1661 172 38 7 chr9 17888730 17889021 -124382423 + AluJb SINE Alu 1 300 -12 716 204 15 68 chr9 17889021 17889056 -124382388 - MER58A DNA MER1_type -2355 65 30 2373 99 0 0 chr9 17889200 17889494 -124381950 + AluSc SINE Alu 1 294 -15 2074 135 0 10 chr9 17889929 17890233 -124381211 + AluSx SINE Alu 1 301 -11 328 348 26 30 chr9 17890451 17890557 -124380887 + MLT1K LTR MaLR 16 121 -467 1662 156 57 27 chr9 17890557 17890858 -124380586 - AluJb SINE Alu 0 312 3 328 348 26 30 chr9 17890858 17891018 -124380426 + MLT1K LTR MaLR 121 281 -307 225 303 0 34 chr9 17891120 17891209 -124380235 + MLT1K LTR MaLR 434 519 -69 2325 93 0 17 chr9 17891362 17891664 -124379780 + AluSg SINE Alu 2 298 -12 1155 55 88 22 chr9 17891921 17892103 -124379341 - MER30 DNA MER1_type -36 194 1 308 253 75 42 chr9 17892113 17892233 -124379211 - MIR SINE MIR -64 198 76 247 354 24 6 chr9 17892327 17892491 -124378953 + L2 LINE L2 1845 2011 -1303 944 150 61 11 chr9 17892761 17892941 -124378503 - MER5A DNA MER1_type 0 189 1 306 127 0 0 chr9 17893077 17893140 -124378304 - Charlie2a DNA MER1_type -1840 1022 960 1229 219 3 56 chr9 17893147 17893467 -124377977 + AluJo SINE Alu 6 308 -4 2053 130 3 3 chr9 17893668 17893969 -124377475 + AluSq SINE Alu 1 301 -12 2892 223 155 104 chr9 17894127 17894433 -124377011 + Charlie2a DNA MER1_type 1 290 -2572 2126 130 0 7 chr9 17894433 17894740 -124376704 + AluJb SINE Alu 1 305 -7 2892 223 155 104 chr9 17894740 17896049 -124375395 + Charlie2a DNA MER1_type 290 1889 -973 814 164 15 0 chr9 17896049 17896183 -124375261 + AluSq/x SINE Alu 1 136 -176 2892 223 155 104 chr9 17896183 17896644 -124374800 + Charlie2a DNA MER1_type 1889 2325 -537 29 47 0 0 chr9 17896663 17896706 -124374738 + AT_rich Low_complexity Low_complexity 1 43 0 297 253 121 0 chr9 17896871 17896954 -124374490 + MIR SINE MIR 16 108 -154 378 168 147 89 chr9 17897449 17897640 -124373804 - L1ME4a LINE L1 -66 6055 5854 260 411 0 0 chr9 17898138 17898228 -124373216 - L2 LINE L2 -49 3223 3134 1908 163 13 0 chr9 17898242 17898548 -124372896 + AluJb SINE Alu 2 311 -1 1800 174 23 0 chr9 17905658 17905963 -124365481 + AluJb SINE Alu 1 312 0 704 167 151 23 chr9 17905966 17906243 -124365201 - MER33 DNA MER1_type -14 310 1 256 278 230 0 chr9 17907551 17907677 -124363767 - MIR SINE MIR -105 157 3 645 289 125 0 chr9 17907735 17907967 -124363477 - MIR SINE MIR 0 262 2 2362 87 0 0 chr9 17909448 17909746 -124361698 - AluSc SINE Alu -11 298 1 293 154 0 0 chr9 17909839 17909891 -124361553 + MER53 DNA DNA 1 52 -137 23 33 0 0 chr9 17910740 17910770 -124360674 + AT_rich Low_complexity Low_complexity 1 30 0 1673 199 0 10 chr9 17911996 17912297 -124359147 - AluJb SINE Alu -14 298 1 435 259 187 6 chr9 17913514 17913680 -124357764 - MIR SINE MIR -26 236 41 2010 125 50 73 chr9 17913795 17913988 -124357456 + MLT1B LTR MaLR 1 182 -208 1724 99 0 0 chr9 17913988 17914210 -124357234 + AluSg SINE Alu 2 223 -87 2010 125 50 73 chr9 17914210 17914415 -124357029 + MLT1B LTR MaLR 182 390 0 381 22 0 0 chr9 17915599 17915645 -124355799 + (CA)n Simple_repeat Simple_repeat 2 47 0 36 40 0 0 chr9 17917775 17917825 -124353619 + AT_rich Low_complexity Low_complexity 1 50 0 194 0 39 0 chr9 17919303 17919329 -124352115 + (TC)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr9 17919630 17919665 -124351779 + AT_rich Low_complexity Low_complexity 1 35 0 515 292 64 28 chr9 17919673 17919894 -124351550 - MIR SINE MIR 0 262 36 1134 155 0 22 chr9 17919908 17920089 -124351355 - AluJb SINE Alu -2 310 134 270 184 44 105 chr9 17920622 17920736 -124350708 + L2 LINE L2 3124 3230 -83 192 288 106 38 chr9 17920797 17920929 -124350515 + MIR SINE MIR 110 250 -12 182 313 0 48 chr9 17921068 17921151 -124350293 - MIR SINE MIR -49 213 135 22 0 0 0 chr9 17921277 17921299 -124350145 + AT_rich Low_complexity Low_complexity 1 22 0 1988 158 3 0 chr9 17921896 17922194 -124349250 - AluSx SINE Alu -13 299 1 2167 106 0 3 chr9 17922206 17922516 -124348928 - AluSg SINE Alu 0 309 1 22 0 0 0 chr9 17922591 17922613 -124348831 + AT_rich Low_complexity Low_complexity 1 22 0 1056 109 0 0 chr9 17922688 17922826 -124348618 + AluJo SINE Alu 4 141 -171 2254 108 0 7 chr9 17922896 17923201 -124348243 - AluSq SINE Alu -10 303 1 1468 184 32 11 chr9 17923241 17923518 -124347926 + AluJb SINE Alu 1 283 -29 1645 208 69 5 chr9 17924998 17925402 -124346042 + L1MB8 LINE L1 5748 6177 -1 210 71 0 0 chr9 17925711 17925739 -124345705 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 40 21 0 0 chr9 17930504 17930551 -124340893 + AT_rich Low_complexity Low_complexity 1 47 0 2208 97 3 0 chr9 17932209 17932498 -124338946 + AluSx SINE Alu 1 290 -22 450 200 17 35 chr9 17933934 17934049 -124337395 + MER96 DNA MER1_type? 62 174 -1 24 85 0 0 chr9 17936049 17936108 -124335336 + AT_rich Low_complexity Low_complexity 1 59 0 325 156 0 131 chr9 17937150 17937220 -124334224 + L1MB4 LINE L1 6075 6124 -56 1960 125 6 26 chr9 17937220 17937532 -124333912 + AluSx SINE Alu 1 306 -6 325 156 0 131 chr9 17937532 17937583 -124333861 + L1MB4 LINE L1 6124 6180 0 385 278 157 36 chr9 17937995 17938218 -124333226 - MIR SINE MIR -9 253 4 1165 161 0 6 chr9 17938487 17938667 -124332777 - AluJb SINE Alu -5 307 129 490 163 0 0 chr9 17938667 17938747 -124332697 - AluS SINE Alu -231 82 3 22 0 0 0 chr9 17939054 17939076 -124332368 + AT_rich Low_complexity Low_complexity 1 22 0 1107 154 28 93 chr9 17939076 17939235 -124332209 + THE1B LTR MaLR 3 142 -222 1834 110 3 98 chr9 17939235 17939563 -124331881 - AluSq SINE Alu -16 297 1 1107 154 28 93 chr9 17939563 17939650 -124331794 + THE1B LTR MaLR 142 233 -131 1508 178 47 25 chr9 17939665 17939941 -124331503 - AluJb SINE Alu -24 288 7 251 336 55 14 chr9 17940898 17941044 -124330400 + MIR SINE MIR 97 248 -14 628 78 0 0 chr9 17941054 17941144 -124330300 + LTR9B LTR ERV1 471 560 -84 23 54 0 0 chr9 17941193 17941230 -124330214 + AT_rich Low_complexity Low_complexity 1 37 0 858 152 8 0 chr9 17941230 17941362 -124330082 - FRAM SINE Alu -30 146 14 212 255 0 0 chr9 17941914 17941965 -124329479 - L2 LINE L2 -2 3311 3261 306 370 123 0 chr9 17945139 17945285 -124326159 - L2 LINE L2 -3 3269 3106 211 333 12 12 chr9 17945419 17945503 -124325941 + L2 LINE L2 3148 3231 -41 202 357 60 0 chr9 17946881 17946965 -124324479 + L2 LINE L2 3172 3260 -12 1639 126 18 57 chr9 17948244 17948577 -124322867 + MER33 DNA MER1_type 5 324 0 195 279 125 10 chr9 17948577 17948681 -124322763 + MIR3 SINE MIR 39 154 -54 198 0 0 0 chr9 17953233 17953255 -124318189 + (CA)n Simple_repeat Simple_repeat 2 23 0 1804 276 73 50 chr9 17956157 17956639 -124314805 - Tigger1 DNA MER2_type 0 2418 1926 463 125 25 25 chr9 17956628 17956708 -124314736 - Tigger1 DNA MER2_type -2337 81 2 * 21 0 0 0 chr9 17956774 17956795 -124314649 + AT_rich Low_complexity Low_complexity 1 21 0 230 264 66 11 chr9 17956966 17957057 -124314387 + L1ME LINE L1 5839 5934 -187 2293 92 3 0 chr9 17957323 17957616 -124313828 - AluSp SINE Alu -19 294 1 199 354 40 34 chr9 17958486 17958661 -124312783 - L2 LINE L2 -357 2957 2782 222 204 0 41 chr9 17958793 17958842 -124312602 - L2 LINE L2 -5 3267 3221 21 0 0 0 chr9 17960476 17960497 -124310947 + AT_rich Low_complexity Low_complexity 1 21 0 2395 91 0 0 chr9 17961080 17961378 -124310066 - AluY SINE Alu -13 298 1 21 0 0 0 chr9 17962012 17962033 -124309411 + AT_rich Low_complexity Low_complexity 1 21 0 2095 145 0 0 chr9 17962883 17963180 -124308264 - AluJo SINE Alu -15 297 1 29 28 0 0 chr9 17963498 17963534 -124307910 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 17964181 17964202 -124307242 + AT_rich Low_complexity Low_complexity 1 21 0 281 160 0 0 chr9 17964451 17964501 -124306943 - L1ME2 LINE L1 -9 6155 6106 29 0 0 0 chr9 17964985 17965014 -124306430 + AT_rich Low_complexity Low_complexity 1 29 0 863 222 65 48 chr9 17968602 17968850 -124302594 + MIR SINE MIR 1 252 -10 619 127 17 8 chr9 17969734 17969852 -124301592 + CT-rich Low_complexity Low_complexity 3 121 0 690 101 0 20 chr9 17970000 17970099 -124301345 + FRAM SINE Alu 62 158 -18 494 286 132 18 chr9 17972992 17973212 -124298232 + MIR SINE MIR 4 248 -14 1307 96 0 0 chr9 17973321 17973487 -124297957 + AluSg/x SINE Alu 134 299 -13 358 254 18 36 chr9 17973622 17973732 -124297712 - MER5B DNA MER1_type -3 175 68 21 0 0 0 chr9 17975488 17975509 -124295935 + AT_rich Low_complexity Low_complexity 1 21 0 392 303 92 37 chr9 17975744 17975962 -124295482 + MIR SINE MIR 33 262 0 1490 203 58 14 chr9 17976567 17976926 -124294518 + L1ME2 LINE L1 5790 6164 0 24 32 0 0 chr9 17980700 17980731 -124290713 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 17982052 17982073 -124289371 + AT_rich Low_complexity Low_complexity 1 21 0 829 196 106 5 chr9 17986159 17986358 -124285086 + MER20 DNA MER1_type 1 219 0 1653 159 9 45 chr9 17986665 17986998 -124284446 - L1MA10 LINE L1 -11 6323 6003 280 277 0 0 chr9 17989203 17989268 -124282176 + L2 LINE L2 3249 3313 0 1053 251 73 51 chr9 17989456 17989497 -124281947 + L2 LINE L2 2881 2920 -393 2272 92 7 0 chr9 17989497 17989790 -124281654 + AluSc SINE Alu 4 298 -11 1053 251 73 51 chr9 17989790 17990159 -124281285 + L2 LINE L2 2920 3300 -13 2255 94 3 0 chr9 17990337 17990635 -124280809 + AluSp SINE Alu 1 299 -14 320 285 99 41 chr9 17990817 17990843 -124280601 - MIR SINE MIR -31 231 208 1290 186 86 34 chr9 17990843 17991170 -124280274 - MER2 DNA MER2_type 0 344 1 320 285 99 41 chr9 17991170 17991328 -124280116 - MIR SINE MIR -54 208 33 249 262 19 78 chr9 17991418 17991521 -124279923 + MIR SINE MIR 47 143 -119 289 382 52 15 chr9 17992452 17992588 -124278856 + L3 LINE CR1 1007 1147 -430 2115 144 7 0 chr9 17992618 17992924 -124278520 + AluSx SINE Alu 1 308 -4 2143 98 10 10 chr9 17993295 17993592 -124277852 - AluSg SINE Alu -13 297 1 181 222 0 0 chr9 17993679 17993715 -124277729 + MIR3 SINE MIR 134 169 -39 202 65 22 43 chr9 17994857 17994903 -124276541 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 2144 130 0 3 chr9 17995251 17995664 -124275780 + AluSq SINE Alu 1 412 0 395 91 0 15 chr9 17997223 17997289 -124274155 + (CA)n Simple_repeat Simple_repeat 1 65 0 286 318 28 9 chr9 17997916 17998023 -124273421 - L2 LINE L2 -17 3296 3188 236 298 65 57 chr9 17998149 17998273 -124273171 - L2 LINE L2 -3 3269 3145 440 227 134 0 chr9 17998341 17998438 -124273006 - FLAM_A SINE Alu -32 110 1 803 219 7 0 chr9 18000498 18000649 -124270795 - FRAM SINE Alu -30 146 1 2430 58 3 0 chr9 18002380 18002674 -124268770 + AluY SINE Alu 1 295 -16 204 40 0 0 chr9 18003608 18003633 -124267811 + (CA)n Simple_repeat Simple_repeat 2 26 0 1519 166 23 65 chr9 18005419 18005727 -124265717 - AluSx SINE Alu -17 295 1 258 281 57 0 chr9 18005848 18005949 -124265495 + MIR SINE MIR 74 185 -23 1689 103 64 57 chr9 18005949 18006231 -124265213 + AluSx SINE Alu 1 284 -28 214 226 0 19 chr9 18006442 18006495 -124264949 + (TA)n Simple_repeat Simple_repeat 1 52 0 2015 141 0 0 chr9 18007455 18007739 -124263705 + AluSx SINE Alu 1 284 -28 264 30 0 0 chr9 18007739 18007772 -124263672 + (CA)n Simple_repeat Simple_repeat 2 34 0 211 329 13 0 chr9 18008206 18008285 -124263159 + GA-rich Low_complexity Low_complexity 3 82 0 2092 81 61 10 chr9 18008432 18008728 -124262716 - AluSx SINE Alu -1 311 1 25 31 0 0 chr9 18009448 18009480 -124261964 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr9 18010380 18010400 -124261044 + (TTG)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr9 18010557 18010585 -124260859 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 18010721 18010752 -124260692 + AT_rich Low_complexity Low_complexity 1 31 0 660 288 116 13 chr9 18015266 18015499 -124255945 - MIR SINE MIR -1 261 5 224 324 162 0 chr9 18015970 18016075 -124255369 + L2 LINE L2 3174 3295 -18 541 302 56 22 chr9 18017143 18017322 -124254122 - MIR SINE MIR -31 231 47 21 0 0 0 chr9 18017362 18017383 -124254061 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 18018626 18018648 -124252796 + AT_rich Low_complexity Low_complexity 1 22 0 216 111 0 0 chr9 18019271 18019307 -124252137 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr9 18019327 18019351 -124252093 + (A)n Simple_repeat Simple_repeat 1 24 0 1054 189 173 21 chr9 18020379 18020622 -124250822 + AluJo SINE Alu 5 284 -18 231 36 0 0 chr9 18020622 18020650 -124250794 + (CATA)n Simple_repeat Simple_repeat 2 29 0 269 159 0 0 chr9 18020670 18020714 -124250730 + Alu SINE Alu 250 293 -9 236 261 35 78 chr9 18021336 18021451 -124249993 - MIR SINE MIR -36 226 117 2376 108 0 0 chr9 18021665 18021972 -124249472 - AluY SINE Alu -4 307 1 2386 93 0 0 chr9 18021973 18022273 -124249171 - AluSx SINE Alu -11 301 2 426 261 128 20 chr9 18022508 18022703 -124248741 + MIR SINE MIR 20 235 -27 2310 100 7 0 chr9 18023012 18023313 -124248131 + AluSx SINE Alu 2 304 -8 565 264 58 17 chr9 18023552 18023726 -124247718 + MER5A DNA MER1_type 1 181 -8 539 204 0 19 chr9 18025452 18025560 -124245884 - FRAM SINE Alu -4 172 67 892 118 0 22 chr9 18025692 18025827 -124245617 - FLAM_C SINE Alu 0 143 12 212 356 63 51 chr9 18025841 18026172 -124245272 + L2 LINE L2 2155 2489 -825 218 341 11 44 chr9 18026763 18026854 -124244590 + L2 LINE L2 3185 3272 0 2013 102 49 0 chr9 18027243 18027527 -124243917 + AluSg SINE Alu 2 299 -11 1782 159 17 10 chr9 18027603 18027899 -124243545 + AluSx SINE Alu 1 298 -14 606 253 116 5 chr9 18028169 18028367 -124243077 + MER58A DNA MER1_type 4 223 -1 2326 71 0 10 chr9 18028572 18028868 -124242576 + AluSp SINE Alu 1 293 -20 21 57 0 0 chr9 18029130 18029165 -124242279 + AT_rich Low_complexity Low_complexity 1 35 0 222 37 0 0 chr9 18029274 18029301 -124242143 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 411 272 51 10 chr9 18029852 18029996 -124241448 - MIR SINE MIR -45 163 8 1238 177 156 0 chr9 18030430 18030673 -124240771 + AluJo SINE Alu 1 281 -31 521 125 11 34 chr9 18030695 18030783 -124240661 - FRAM/FAM SINE Alu -98 78 1 1344 158 150 28 chr9 18030841 18031120 -124240324 + AluSx SINE Alu 1 310 0 213 243 81 14 chr9 18031534 18031608 -124239836 + MIR SINE MIR 117 195 -67 2181 105 10 0 chr9 18031826 18032121 -124239323 + AluSx SINE Alu 4 301 -11 450 325 101 5 chr9 18032885 18033073 -124238371 - MIR SINE MIR -4 258 53 23 33 0 0 chr9 18033459 18033489 -124237955 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr9 18034844 18034871 -124236573 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr9 18035297 18035319 -124236125 + (CCCCCA)n Simple_repeat Simple_repeat 5 26 0 2425 44 0 20 chr9 18037084 18037380 -124234064 + AluY SINE Alu 1 290 -21 2086 136 0 0 chr9 18037918 18038205 -124233239 - AluSx SINE Alu -25 287 1 215 357 10 23 chr9 18038824 18039028 -124232416 + GA-rich Low_complexity Low_complexity 1 201 0 207 0 0 0 chr9 18043709 18043732 -124227712 + (T)n Simple_repeat Simple_repeat 1 23 0 1475 190 3 28 chr9 18044055 18044344 -124227100 + AluJb SINE Alu 1 282 -30 1262 219 12 45 chr9 18045739 18046072 -124225372 + MER102b DNA MER1_type 1 322 -19 22 0 0 0 chr9 18052722 18052744 -124218700 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 18053366 18053387 -124218057 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr9 18055481 18055514 -124215930 + (CA)n Simple_repeat Simple_repeat 1 33 0 267 31 0 0 chr9 18056249 18056281 -124215163 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr9 18056818 18056842 -124214602 + AT_rich Low_complexity Low_complexity 1 24 0 192 97 0 0 chr9 18057381 18057412 -124214032 + (CGGG)n Simple_repeat Simple_repeat 3 33 0 224 208 0 0 chr9 18058190 18058238 -124213206 + CT-rich Low_complexity Low_complexity 1 48 0 186 136 0 76 chr9 18060232 18060298 -124211146 + (TCTCCC)n Simple_repeat Simple_repeat 4 64 0 21 36 0 0 chr9 18061041 18061069 -124210375 + AT_rich Low_complexity Low_complexity 1 28 0 210 118 0 0 chr9 18062423 18062457 -124208987 + (A)n Simple_repeat Simple_repeat 1 34 0 1236 110 0 0 chr9 18063999 18064163 -124207281 + AluSq SINE Alu 133 296 -17 189 0 0 0 chr9 18065662 18065683 -124205761 + (A)n Simple_repeat Simple_repeat 1 21 0 1991 121 3 25 chr9 18065755 18066069 -124205375 - AluSx SINE Alu -5 307 1 2004 105 0 0 chr9 18066217 18066475 -124204969 + AluSx SINE Alu 1 258 -54 201 147 0 0 chr9 18066480 18066514 -124204930 + (A)n Simple_repeat Simple_repeat 1 34 0 194 61 0 30 chr9 18066710 18066743 -124204701 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2297 105 0 0 chr9 18066745 18067039 -124204405 - AluSg SINE Alu -16 294 1 2066 103 4 0 chr9 18067098 18067371 -124204073 - AluSp SINE Alu -39 274 1 674 150 9 18 chr9 18067381 18067494 -124203950 - FRAM SINE Alu -24 152 41 2606 62 7 0 chr9 18067506 18067815 -124203629 - AluY SINE Alu 0 311 1 464 167 0 12 chr9 18067815 18067899 -124203545 - AluJo/FLAM SINE Alu -182 130 48 535 230 66 20 chr9 18068055 18068251 -124203193 + L1ME3A LINE L1 5961 6165 -5 21 36 0 0 chr9 18068263 18068291 -124203153 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 52 0 chr9 18069154 18069212 -124202232 - L2 LINE L2 -86 3227 3167 331 345 70 65 chr9 18069456 18069652 -124201792 - L2 LINE L2 -508 2806 2612 2002 132 0 10 chr9 18069652 18069940 -124201504 + AluSq SINE Alu 1 285 -28 331 345 70 65 chr9 18069940 18070187 -124201257 - L2 LINE L2 -702 2612 2361 2226 81 4 0 chr9 18071459 18071731 -124199713 + AluSp SINE Alu 23 295 -18 2362 103 0 0 chr9 18071944 18072245 -124199199 + AluSx SINE Alu 4 304 -8 2369 53 0 11 chr9 18074221 18074534 -124196910 - AluY SINE Alu 0 310 1 499 313 94 0 chr9 18075255 18075456 -124195988 + MIR SINE MIR 13 232 -30 247 287 13 80 chr9 18075505 18075655 -124195789 + Charlie8 DNA MER1_type 10 149 -2268 205 309 60 24 chr9 18076265 18076349 -124195095 - MIR3 SINE MIR -4 204 118 261 255 0 0 chr9 18076484 18076535 -124194909 - MER63 DNA MER1_type -27 1035 985 1838 136 3 7 chr9 18076617 18076904 -124194540 - AluSx SINE Alu -3 309 24 2109 86 4 4 chr9 18077005 18077274 -124194170 + AluY SINE Alu 27 295 -16 711 281 65 5 chr9 18077729 18077946 -124193498 - MIR SINE MIR -11 251 22 405 287 78 24 chr9 18078268 18078435 -124193009 + L1MC4a LINE L1 5773 5948 -1860 1860 157 3 31 chr9 18078532 18078851 -124192593 + AluJb SINE Alu 3 312 0 2171 106 13 0 chr9 18078862 18079163 -124192281 + AluSq SINE Alu 3 307 -6 243 0 0 0 chr9 18079221 18079248 -124192196 + (TA)n Simple_repeat Simple_repeat 2 28 0 25 31 0 0 chr9 18079249 18079281 -124192163 + AT_rich Low_complexity Low_complexity 1 32 0 1570 186 0 18 chr9 18079737 18080016 -124191428 + AluJb SINE Alu 26 299 -13 208 256 120 51 chr9 18080226 18080343 -124191101 + L2 LINE L2 3167 3291 -22 224 247 59 47 chr9 18081070 18081155 -124190289 + L2 LINE L2 3186 3271 -1 346 223 41 8 chr9 18081908 18082029 -124189415 + L1MC4 LINE L1 1995 6983 -1339 2141 98 25 0 chr9 18082047 18082333 -124189111 + AluSx SINE Alu 1 293 -19 2246 110 0 0 chr9 18084855 18085156 -124186288 - AluSx SINE Alu -11 301 1 359 301 102 19 chr9 18085839 18086095 -124185349 + L2 LINE L2 2150 2426 -888 304 284 91 40 chr9 18086110 18086286 -124185158 + LTR68 LTR ERV1 219 403 -337 266 308 91 41 chr9 18086599 18086820 -124184624 + L2 LINE L2 2461 2692 -622 2298 99 0 7 chr9 18087006 18087308 -124184136 + AluY SINE Alu 1 300 -11 254 143 333 0 chr9 18087397 18087481 -124183963 + L2 LINE L2 3199 3310 -3 1624 209 45 57 chr9 18088220 18088644 -124182800 - MLT1D LTR MaLR 0 505 87 1909 134 32 0 chr9 18088644 18088928 -124182516 - AluSg SINE Alu -17 293 1 1624 209 45 57 chr9 18088928 18089014 -124182430 - MLT1D LTR MaLR -418 87 1 2305 81 0 0 chr9 18090025 18090322 -124181122 - AluY SINE Alu -14 297 1 488 171 59 17 chr9 18090667 18090824 -124180620 + MER106B DNA MER1_type 57 223 -13 1845 164 6 16 chr9 18091260 18091572 -124179872 + AluJo SINE Alu 1 309 -3 255 237 66 13 chr9 18093232 18093308 -124178136 - MIR SINE MIR -98 164 85 1942 157 3 3 chr9 18093588 18093887 -124177557 + AluJb SINE Alu 1 299 -13 235 127 18 36 chr9 18095185 18095240 -124176204 + GA-rich Low_complexity Low_complexity 3 56 0 2623 33 0 3 chr9 18096083 18096386 -124175058 - AluY SINE Alu -8 303 2 516 235 71 38 chr9 18096813 18096996 -124174448 - L3b LINE CR1 -212 1371 1183 385 241 37 59 chr9 18098013 18098200 -124173244 - L1MC5 LINE L1 -61 7900 7718 2222 123 3 0 chr9 18098266 18098566 -124172878 - AluSq SINE Alu -12 301 1 392 273 31 23 chr9 18099511 18099639 -124171805 + L2 LINE L2 3167 3295 -18 281 303 50 30 chr9 18099647 18099800 -124171644 - MIR SINE MIR -59 149 46 376 291 184 20 chr9 18099883 18100079 -124171365 + MIR SINE MIR 20 247 -15 1296 131 5 41 chr9 18100967 18101188 -124170256 + AluJb SINE Alu 85 297 -15 1990 134 7 0 chr9 18101189 18101481 -124169963 + AluSx SINE Alu 1 294 -18 261 0 0 0 chr9 18104269 18104298 -124167146 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1875 149 0 3 chr9 18104301 18104583 -124166861 - AluSx SINE Alu -31 281 1 765 243 23 6 chr9 18105347 18105524 -124165920 + MER5A DNA MER1_type 1 180 -9 2051 110 3 3 chr9 18106450 18106740 -124164704 - AluSq SINE Alu -23 290 1 2303 89 0 3 chr9 18107144 18107435 -124164009 + AluSx SINE Alu 1 290 -22 26 0 0 0 chr9 18107435 18107461 -124163983 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr9 18107461 18107484 -124163960 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2409 80 0 3 chr9 18107719 18108021 -124163423 + AluY SINE Alu 1 301 -10 482 234 91 53 chr9 18108075 18108472 -124162972 + L1ME4a LINE L1 5706 6117 -4 196 299 294 5 chr9 18108817 18109001 -124162443 - MIR SINE MIR -13 249 13 1339 155 39 113 chr9 18109310 18109620 -124161824 + AluJo SINE Alu 14 300 -12 1379 147 63 98 chr9 18109900 18110255 -124161189 + L1MB8 LINE L1 5753 6119 -59 2633 55 0 0 chr9 18110255 18110566 -124160878 + AluY SINE Alu 1 311 0 1379 147 63 98 chr9 18110566 18110592 -124160852 + L1MB8 LINE L1 6119 6144 -34 2222 93 0 0 chr9 18110592 18110883 -124160561 + AluSc SINE Alu 1 291 -18 1379 147 63 98 chr9 18110883 18110941 -124160503 + L1MB8 LINE L1 6144 6178 0 1709 132 4 4 chr9 18111654 18111912 -124159532 - AluSx SINE Alu -23 289 32 246 256 48 76 chr9 18111913 18112202 -124159242 + L1ME4a LINE L1 5653 5933 -188 2138 109 0 0 chr9 18112305 18112619 -124158825 + AluSc SINE Alu 1 314 0 372 329 43 101 chr9 18112795 18113190 -124158254 + L2 LINE L2 2901 3272 0 23 33 0 0 chr9 18114188 18114218 -124157226 + AT_rich Low_complexity Low_complexity 1 30 0 313 271 127 8 chr9 18114449 18114567 -124156877 - L2 LINE L2 -40 3232 3101 197 65 32 0 chr9 18114618 18114649 -124156795 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1800 140 31 10 chr9 18115697 18115989 -124155455 - AluSx SINE Alu -14 298 1 432 141 0 65 chr9 18116047 18116139 -124155305 + AluS SINE Alu 222 307 -4 331 169 0 15 chr9 18116146 18116211 -124155233 - MER69 DNA AcHobo -2397 129 66 2255 112 0 0 chr9 18118305 18118608 -124152836 - AluSx SINE Alu -9 303 1 1824 150 0 0 chr9 18118972 18119246 -124152198 + AluSx SINE Alu 37 310 -2 377 239 113 0 chr9 18119287 18119429 -124152015 + L1ME4a LINE L1 5964 6121 0 302 231 133 49 chr9 18119991 18120134 -124151310 + MIR SINE MIR 30 184 -78 245 297 80 29 chr9 18121009 18121147 -124150297 + MER117 DNA MER1_type 15 159 -38 215 356 135 10 chr9 18121221 18121325 -124150119 - MIR SINE MIR -56 152 36 * 244 314 82 25 chr9 18121294 18121453 -124149991 + MIR SINE MIR 83 250 -12 348 148 0 45 chr9 18121867 18121955 -124149489 + (TTTCC)n Simple_repeat Simple_repeat 1 84 0 911 98 0 0 chr9 18121955 18122077 -124149367 - AluY SINE Alu -6 305 184 427 240 0 10 chr9 18124195 18124299 -124147145 + MLT1L LTR MaLR 152 254 -361 2089 53 0 109 chr9 18124548 18124886 -124146558 + AluY SINE Alu 1 301 0 487 191 148 26 chr9 18124946 18125061 -124146383 + FLAM_A SINE Alu 1 129 -4 635 291 82 10 chr9 18126201 18126407 -124145037 + MIR SINE MIR 35 255 -7 1722 190 3 7 chr9 18126425 18126725 -124144719 - AluJb SINE Alu -13 299 1 233 299 41 10 chr9 18126742 18126839 -124144605 - MIR SINE MIR -50 212 113 2867 212 158 35 chr9 18127061 18127184 -124144260 + Tigger6a DNA MER2_type 1 108 -1489 2549 57 0 0 chr9 18127184 18127481 -124143963 + AluY SINE Alu 1 297 -14 2867 212 158 35 chr9 18127481 18128248 -124143196 + Tigger6a DNA MER2_type 108 1020 -577 2314 69 10 3 chr9 18128248 18128536 -124142908 + AluY SINE Alu 1 290 -21 2867 212 158 35 chr9 18128536 18128609 -124142835 + Tigger6a DNA MER2_type 1020 1083 0 234 340 110 0 chr9 18128609 18128709 -124142735 - L2 LINE L2 -18 3295 3185 233 213 0 21 chr9 18128691 18128738 -124142706 - L2 LINE L2 -3 3269 3224 * 1152 221 56 9 chr9 18129156 18129477 -124141967 - L1ME1 LINE L1 0 6166 5831 406 163 0 58 chr9 18130870 18130956 -124140488 - AluJ/FRAM SINE Alu -2 300 220 697 154 0 0 chr9 18130962 18131066 -124140378 - AluJb SINE Alu -208 104 1 243 125 0 0 chr9 18131514 18131554 -124139890 + (TG)n Simple_repeat Simple_repeat 1 40 0 2341 92 0 3 chr9 18131633 18131938 -124139506 + AluSp SINE Alu 2 305 -8 2376 85 0 0 chr9 18132186 18132479 -124138965 - AluSg SINE Alu -17 293 1 597 276 148 0 chr9 18132810 18133027 -124138417 + MIR SINE MIR 3 251 -11 209 295 92 75 chr9 18234804 18235127 -124036317 + L2 LINE L2 2714 3056 -257 281 321 102 7 chr9 18235491 18235628 -124035816 + MIR SINE MIR 20 169 -93 415 259 29 72 chr9 18235713 18235852 -124035592 + L2 LINE L2 3181 3313 0 459 211 45 38 chr9 18236296 18236429 -124035015 - MIR SINE MIR -6 256 123 2076 106 0 13 chr9 18236464 18236765 -124034679 + AluSx SINE Alu 1 297 -15 2150 106 0 0 chr9 18238271 18238572 -124032872 + AluSg SINE Alu 1 301 -9 196 314 0 14 chr9 18238622 18238692 -124032752 + L2 LINE L2 3245 3313 0 667 120 0 0 chr9 18238898 18238990 -124032454 + AluSp/q SINE Alu 206 297 -16 2081 100 3 23 chr9 18239320 18239621 -124031823 + AluSp SINE Alu 1 295 -18 216 288 65 33 chr9 18239825 18239978 -124031466 - L2 LINE L2 -8 3305 3148 265 188 125 104 chr9 18240945 18241089 -124030355 - MER117 DNA MER1_type -49 148 2 233 301 68 60 chr9 18241108 18241241 -124030203 - MIR SINE MIR -105 157 24 418 272 88 72 chr9 18242207 18242457 -124028987 - MIR SINE MIR -4 258 5 2132 101 7 3 chr9 18242858 18243156 -124028288 - AluSq SINE Alu -14 299 1 752 200 69 6 chr9 18243501 18243676 -124027768 + L1MB7 LINE L1 5958 6143 -41 400 243 12 20 chr9 18243675 18243793 -124027651 + L1MC4 LINE L1 7850 8028 -14 * 1255 142 49 24 chr9 18243793 18244039 -124027405 - AluSx SINE Alu 0 312 61 816 148 21 7 chr9 18244086 18244228 -124027216 + AluJb SINE Alu 161 304 -8 1986 129 3 0 chr9 18244228 18244522 -124026922 + AluSp SINE Alu 1 295 -18 4336 124 8 58 chr9 18244572 18245296 -124026148 + LTR12 LTR ERV1 1 688 0 181 260 80 67 chr9 18245880 18246030 -124025414 - L2 LINE L2 -47 3266 3115 2138 71 13 42 chr9 18246177 18246486 -124024958 + AluY SINE Alu 1 300 -11 192 358 128 0 chr9 18246504 18246652 -124024792 + MIR SINE MIR 80 246 -16 308 246 15 0 chr9 18246905 18246970 -124024474 - L2 LINE L2 0 3272 3207 1775 151 0 3 chr9 18247040 18247325 -124024119 + AluSx SINE Alu 1 284 -28 2176 184 174 16 chr9 18247684 18248229 -124023215 + MER99 DNA DNA 194 824 -4 1133 284 98 22 chr9 18248252 18248699 -124022745 - MLT1L LTR MaLR -2 613 133 2102 106 0 13 chr9 18248760 18249062 -124022382 - AluSx SINE Alu -14 298 1 280 182 140 91 chr9 18249076 18249106 -124022338 - Charlie1b DNA MER1_type -2279 482 455 2094 105 3 0 chr9 18249106 18249400 -124022044 - AluSp SINE Alu -13 300 6 280 182 140 91 chr9 18249400 18249512 -124021932 - Charlie1b DNA MER1_type -2306 455 333 1787 210 113 18 chr9 18249513 18249955 -124021489 + MLT1D LTR MaLR 1 484 -21 8437 114 103 77 chr9 18249955 18251608 -124019836 + pTR5 LTR ERV1 743 2438 0 1327 220 34 17 chr9 18251655 18251672 -124019772 - Charlie1b DNA MER1_type -2465 296 281 1948 116 21 0 chr9 18251672 18251956 -124019488 + AluSx SINE Alu 6 295 -17 1327 220 34 17 chr9 18251956 18252229 -124019215 - Charlie1b DNA MER1_type -2480 281 1 758 315 83 27 chr9 18252359 18252439 -124019005 - L2 LINE L2 -1 3312 3238 3121 129 32 66 chr9 18252439 18252680 -124018764 - MER6A DNA MER2_type -264 601 353 2172 93 3 10 chr9 18252680 18252980 -124018464 - AluSx SINE Alu -14 298 1 3121 129 32 66 chr9 18252980 18253358 -124018086 - MER6A DNA MER2_type -512 353 3 758 315 83 27 chr9 18253358 18253799 -124017645 - L2 LINE L2 -75 3238 2761 21 0 0 0 chr9 18254444 18254465 -124016979 + AT_rich Low_complexity Low_complexity 1 21 0 2305 72 10 3 chr9 18254763 18255067 -124016377 - AluSx SINE Alu -6 306 1 180 0 0 0 chr9 18255264 18255284 -124016160 + (TC)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr9 18256261 18256284 -124015160 + GC_rich Low_complexity Low_complexity 1 23 0 206 200 83 0 chr9 18256725 18256785 -124014659 + G-rich Low_complexity Low_complexity 3 67 0 27 81 0 0 chr9 18256976 18257038 -124014406 + GC_rich Low_complexity Low_complexity 1 62 0 712 127 9 9 chr9 18258174 18258284 -124013160 + AluSg/x SINE Alu 194 303 -9 222 37 0 0 chr9 18258488 18258515 -124012929 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1981 106 3 3 chr9 18258517 18258800 -124012644 - AluSx SINE Alu -29 283 1 2139 95 37 10 chr9 18259006 18259300 -124012144 - AluY SINE Alu -8 303 2 2308 155 28 0 chr9 18259675 18260029 -124011415 - THE1B LTR MaLR 0 364 1 1050 129 12 6 chr9 18260054 18260217 -124011227 - AluSc SINE Alu -10 299 136 346 307 44 9 chr9 18260810 18260924 -124010520 + L2 LINE L2 3155 3272 0 221 305 76 66 chr9 18261817 18262014 -124009430 + MIR SINE MIR 43 241 -21 207 297 40 0 chr9 18262048 18262122 -124009322 - MIR SINE MIR -105 157 81 2334 89 0 0 chr9 18262342 18262646 -124008798 + AluY SINE Alu 1 304 -7 2565 118 22 0 chr9 18262718 18263074 -124008370 + THE1B LTR MaLR 1 364 0 1138 131 51 70 chr9 18263889 18264103 -124007341 - AluSg/x SINE Alu -3 309 100 672 130 22 0 chr9 18264212 18264304 -124007140 - AluJ/FLAM SINE Alu -217 95 2 965 206 22 5 chr9 18264529 18264713 -124006731 - MER5A DNA MER1_type -2 187 1 2782 92 3 24 chr9 18265302 18265673 -124005771 - THE1B LTR MaLR 0 364 2 2141 121 10 0 chr9 18265703 18266001 -124005443 - AluSq SINE Alu -12 301 1 2093 130 3 0 chr9 18266219 18266520 -124004924 - AluSc SINE Alu -7 302 1 2265 64 54 10 chr9 18266797 18267095 -124004349 + AluY SINE Alu 1 311 0 2411 60 17 0 chr9 18268271 18268569 -124002875 + AluY SINE Alu 1 303 -8 709 168 9 0 chr9 18268893 18269000 -124002444 + FLAM_A SINE Alu 12 119 -23 2027 91 31 18 chr9 18269003 18269289 -124002155 + AluSx SINE Alu 16 305 -7 25 31 0 0 chr9 18269289 18269321 -124002123 + AT_rich Low_complexity Low_complexity 1 32 0 2278 112 3 0 chr9 18269331 18269643 -124001801 + AluSp SINE Alu 1 313 0 2146 95 0 16 chr9 18269648 18269954 -124001490 + AluY SINE Alu 1 301 -10 2441 64 0 0 chr9 18269980 18270276 -124001168 + AluY SINE Alu 1 296 -15 288 111 0 0 chr9 18270907 18270952 -124000492 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr9 18271522 18271544 -123999900 + AT_rich Low_complexity Low_complexity 1 22 0 208 254 0 18 chr9 18272529 18272584 -123998860 + (TATG)n Simple_repeat Simple_repeat 3 56 0 202 274 0 0 chr9 18272761 18272812 -123998632 + L2 LINE L2 2918 2968 -304 2785 89 19 8 chr9 18272921 18273281 -123998163 - THE1B LTR MaLR 0 364 1 370 163 76 54 chr9 18273405 18273497 -123997947 + MER93b LTR ERV1 1 94 -279 266 244 22 33 chr9 18273626 18273716 -123997728 - L2 LINE L2 -5 3308 3220 2257 123 0 0 chr9 18273779 18274087 -123997357 + AluSq SINE Alu 2 309 -4 710 299 63 61 chr9 18274700 18275162 -123996282 - LTR33 LTR ERVL 0 521 59 988 149 10 55 chr9 18275327 18275528 -123995916 + MIR SINE MIR 70 261 -1 1131 137 24 161 chr9 18275659 18275863 -123995581 - MER33 DNA MER1_type -2262 323 191 2220 117 7 0 chr9 18275863 18276163 -123995281 - AluSq SINE Alu -11 302 1 1131 137 24 161 chr9 18276163 18276330 -123995114 - MER33 DNA MER1_type -2394 191 3 795 176 15 8 chr9 18276618 18276749 -123994695 + FLAM_C SINE Alu 2 133 0 606 133 0 0 chr9 18276891 18276974 -123994470 + AluSg/x SINE Alu 213 295 -15 2018 141 7 0 chr9 18277050 18277349 -123994095 - AluSx SINE Alu -11 301 1 1435 148 0 59 chr9 18277524 18277780 -123993664 + AluJo SINE Alu 69 309 -3 2283 89 0 3 chr9 18278117 18278408 -123993036 - AluSc SINE Alu -19 290 1 635 300 75 43 chr9 18278408 18278781 -123992663 + MLT1K LTR MaLR 182 566 -22 1699 157 71 40 chr9 18279020 18279371 -123992073 - THE1C LTR MaLR -8 367 6 423 83 0 0 chr9 18279371 18279431 -123992013 + (TCTG)n Simple_repeat Simple_repeat 3 62 0 1158 108 0 0 chr9 18279432 18279590 -123991854 + AluY SINE Alu 140 297 -14 282 344 72 62 chr9 18279672 18279963 -123991481 + L2 LINE L2 2961 3254 -18 1934 240 76 12 chr9 18280164 18280648 -123990796 - LTR40a LTR ERVL 0 519 5 210 319 69 58 chr9 18280701 18281021 -123990423 - L2 LINE L2 -236 3036 2687 2371 88 0 3 chr9 18281149 18281454 -123989990 - AluY SINE Alu -7 304 1 2281 98 7 0 chr9 18281576 18281872 -123989572 - AluSc SINE Alu -11 298 1 441 289 17 17 chr9 18281924 18282097 -123989347 + MER117 DNA MER1_type 7 179 -18 21 0 0 0 chr9 18282708 18282729 -123988715 + AT_rich Low_complexity Low_complexity 1 21 0 4318 175 67 9 chr9 18283192 18283933 -123987511 + L1 LINE L1 2552 3363 -2783 1669 168 83 46 chr9 18283933 18284260 -123987184 - MER44D DNA MER2_type 0 609 1 4318 175 67 9 chr9 18284260 18284483 -123986961 + L1 LINE L1 3363 3572 -2574 1195 44 0 0 chr9 18284483 18284618 -123986826 + AluY SINE Alu 1 135 -176 2328 78 10 0 chr9 18284958 18285252 -123986192 - AluSx SINE Alu -15 297 1 2288 104 10 0 chr9 18285346 18285645 -123985799 - AluY SINE Alu -9 302 1 779 181 15 15 chr9 18285946 18286079 -123985365 - FLAM_A SINE Alu 0 133 1 198 167 0 0 chr9 18286646 18286682 -123984762 + (CA)n Simple_repeat Simple_repeat 1 36 0 768 148 48 91 chr9 18286700 18286909 -123984535 + pTR5 LTR ERV1 742 941 -1497 4877 142 21 63 chr9 18287067 18287925 -123983519 + LTR12 LTR ERV1 5 826 0 2168 84 52 7 chr9 18288095 18288382 -123983062 - AluY SINE Alu -11 300 1 713 204 17 41 chr9 18288524 18288696 -123982748 + MER45A DNA AcHobo 1 168 -10 319 330 28 22 chr9 18289293 18289475 -123981969 + MIR SINE MIR 80 262 0 190 333 0 0 chr9 18289531 18289594 -123981850 + MIR SINE MIR 81 143 -119 2157 113 0 3 chr9 18289670 18289972 -123981472 - AluSq SINE Alu -12 301 1 776 99 0 0 chr9 18290068 18290169 -123981275 - AluY SINE Alu -7 304 204 298 358 25 8 chr9 18290297 18290417 -123981027 - MIR SINE MIR -121 141 20 1991 124 3 17 chr9 18290508 18290806 -123980638 - AluSx SINE Alu -18 294 1 490 169 0 0 chr9 18291197 18291274 -123980170 + FLAM SINE Alu 48 124 -19 2457 65 13 3 chr9 18291658 18291967 -123979477 - AluSx SINE Alu 0 312 1 293 321 74 32 chr9 18292014 18292204 -123979240 - MER20 DNA MER1_type -17 202 5 2409 87 0 0 chr9 18292612 18292921 -123978523 + AluY SINE Alu 1 309 -2 2189 63 35 3 chr9 18293042 18293329 -123978115 + AluY SINE Alu 3 298 -13 24 0 0 0 chr9 18294470 18294494 -123976950 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr9 18294568 18294595 -123976849 + GC_rich Low_complexity Low_complexity 1 27 0 2462 81 0 10 chr9 18295913 18296223 -123975221 + AluY SINE Alu 1 307 -4 539 327 61 70 chr9 18296534 18296990 -123974454 + L2 LINE L2 2845 3296 -17 188 139 0 23 chr9 18297001 18297044 -123974400 + (TA)n Simple_repeat Simple_repeat 1 42 0 477 257 68 20 chr9 18298144 18298292 -123973152 + MIR SINE MIR 58 212 -50 411 119 45 0 chr9 18298391 18298479 -123972965 - AluJo SINE Alu 0 314 224 1021 156 0 56 chr9 18298479 18298658 -123972786 - AluJo SINE Alu -142 170 2 650 171 9 0 chr9 18299112 18299217 -123972227 + FLAM_C SINE Alu 2 107 -36 198 0 0 0 chr9 18302032 18302054 -123969390 + (T)n Simple_repeat Simple_repeat 1 22 0 2124 107 0 33 chr9 18305015 18305315 -123966129 - AluSx SINE Alu -22 290 1 2382 91 0 0 chr9 18305505 18305802 -123965642 + AluSg SINE Alu 1 297 -13 3186 171 36 85 chr9 18306402 18306709 -123964735 - L1M3 LINE L1 -377 5803 5483 2269 87 3 0 chr9 18306709 18307008 -123964436 - AluY SINE Alu -11 300 1 3186 171 36 85 chr9 18307008 18307334 -123964110 - L1M3 LINE L1 -697 5483 5143 1535 186 27 24 chr9 18307334 18307513 -123963931 - AluJo SINE Alu -9 303 121 189 0 0 0 chr9 18307513 18307534 -123963910 + (TA)n Simple_repeat Simple_repeat 2 22 0 1535 186 27 24 chr9 18307534 18307649 -123963795 - AluJo SINE Alu -191 121 8 3186 171 36 85 chr9 18307649 18307665 -123963779 - L1M3 LINE L1 -1037 5143 5128 1978 121 28 10 chr9 18307665 18307955 -123963489 - AluSx SINE Alu -17 295 1 3186 171 36 85 chr9 18307955 18308513 -123962931 - L1M3 LINE L1 -1052 5128 4664 4341 167 34 37 chr9 18308537 18308582 -123962862 - L1MB2 LINE L1 -3 6168 6124 2076 112 7 10 chr9 18308582 18308877 -123962567 - AluSx SINE Alu -18 294 1 4341 167 34 37 chr9 18308877 18309841 -123961603 - L1MB2 LINE L1 -47 6124 5167 2516 64 0 6 chr9 18309841 18310153 -123961291 - AluY SINE Alu -1 310 1 4341 167 34 37 chr9 18310153 18310207 -123961237 - L1MB2 LINE L1 -1004 5167 5114 2142 107 16 13 chr9 18311210 18311520 -123959924 - AluSx SINE Alu -1 311 1 829 194 0 8 chr9 18312143 18312277 -123959167 + FLAM_A SINE Alu 1 133 0 234 0 0 0 chr9 18312412 18312438 -123959006 + (TG)n Simple_repeat Simple_repeat 1 26 0 2378 55 0 36 chr9 18312868 18313175 -123958269 + AluY SINE Alu 1 296 -15 1942 147 0 3 chr9 18314825 18315131 -123956313 - AluSx SINE Alu 0 305 1 1775 139 45 7 chr9 18315292 18315580 -123955864 - AluJb SINE Alu -13 299 1 734 313 109 25 chr9 18315669 18316220 -123955224 + L2 LINE L2 2722 3313 0 244 316 11 21 chr9 18316369 18316464 -123954980 + Charlie7 DNA MER1_type 2 95 -2517 838 188 0 0 chr9 18316592 18316725 -123954719 - AluJo/FRAM SINE Alu -7 305 173 584 214 0 0 chr9 18316726 18316824 -123954620 - AluJ/FLAM SINE Alu -213 99 2 469 286 16 8 chr9 18316851 18316977 -123954467 - MARNA DNA Mariner -368 218 92 2399 101 0 0 chr9 18317755 18318061 -123953383 + AluSx SINE Alu 1 306 -6 1485 175 103 12 chr9 18318338 18318669 -123952775 - MER46B DNA MER2_type 0 236 1 432 151 0 0 chr9 18319017 18319090 -123952354 - AluS SINE Alu -236 74 2 1931 120 53 0 chr9 18319121 18319404 -123952040 + AluSg SINE Alu 1 298 -12 270 295 32 109 chr9 18319879 18319933 -123951511 + L2 LINE L2 3129 3186 -86 297 0 0 0 chr9 18319933 18319966 -123951478 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2285 31 0 4 chr9 18319972 18320228 -123951216 - L1PA5 LINE L1 -7 6147 5893 270 295 32 109 chr9 18320228 18320322 -123951122 + L2 LINE L2 3191 3272 0 2205 115 0 0 chr9 18320611 18320899 -123950545 - AluSx SINE Alu -24 288 1 2555 74 0 0 chr9 18320921 18321232 -123950212 - AluY SINE Alu 0 311 1 189 0 0 0 chr9 18321269 18321290 -123950154 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 436 279 130 33 chr9 18321541 18321756 -123949688 + MLT1J2 LTR MaLR 196 431 -19 2266 105 7 0 chr9 18322932 18323298 -123948146 - AluSg SINE Alu 0 368 1 2523 74 0 0 chr9 18323419 18323729 -123947715 - AluSg SINE Alu 0 310 1 896 266 11 25 chr9 18323731 18324009 -123947435 - MLT1H LTR MaLR -239 310 37 3605 163 42 3 chr9 18324009 18324629 -123946815 + LTR48B LTR ERV1 1 644 0 2127 108 0 7 chr9 18324794 18325104 -123946340 - AluSp SINE Alu 0 308 1 1526 180 35 31 chr9 18325138 18325267 -123946177 + AluJo SINE Alu 1 128 -184 243 0 0 0 chr9 18325267 18325294 -123946150 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1526 180 35 31 chr9 18325294 18325453 -123945991 + AluJo SINE Alu 128 290 -22 1474 239 103 7 chr9 18325525 18325981 -123945463 - L1MC4a LINE L1 -1830 5978 5479 181 302 0 0 chr9 18326141 18326184 -123945260 - MIR SINE MIR -160 102 60 1804 159 8 42 chr9 18326241 18326411 -123945033 - L1MB3 LINE L1 -8 6175 6022 2265 79 21 3 chr9 18326411 18326702 -123944742 + AluSp SINE Alu 2 297 -16 1804 159 8 42 chr9 18326702 18326884 -123944560 - L1MB3 LINE L1 -161 6022 5835 344 178 133 11 chr9 18326890 18326980 -123944464 - L1MC4a LINE L1 -738 5436 5336 773 173 27 79 chr9 18326995 18327077 -123944367 + MLT1A1 LTR MaLR 1 86 -279 1950 148 3 0 chr9 18327077 18327393 -123944051 + AluSx SINE Alu 1 317 0 773 173 27 79 chr9 18327393 18327557 -123943887 + MLT1A1 LTR MaLR 86 298 -67 2226 98 0 20 chr9 18327557 18327863 -123943581 + AluSq SINE Alu 2 301 -12 773 173 27 79 chr9 18327863 18327928 -123943516 + MLT1A1 LTR MaLR 298 365 0 221 348 37 22 chr9 18328247 18328382 -123943062 + L2 LINE L2 2637 2773 -541 1386 203 174 9 chr9 18328417 18328757 -123942687 + MSTD LTR MaLR 1 396 0 1155 130 0 0 chr9 18328882 18329044 -123942400 + AluSx SINE Alu 1 162 -150 23 0 0 0 chr9 18329181 18329204 -123942240 + AT_rich Low_complexity Low_complexity 1 23 0 227 287 194 8 chr9 18329581 18329710 -123941734 - MIR3 SINE MIR -23 185 33 689 263 114 73 chr9 18329875 18330373 -123941071 - MLT1L LTR MaLR -93 495 6 2099 85 3 65 chr9 18330427 18330734 -123940710 + AluSp SINE Alu 1 288 -25 193 272 54 22 chr9 18331603 18331695 -123939749 + MIR SINE MIR 153 247 -15 4001 188 23 55 chr9 18332157 18332223 -123939221 + L1MB7 LINE L1 4596 4663 -1521 1026 153 6 12 chr9 18332223 18332386 -123939058 + FRAM SINE Alu 1 162 -4 4001 188 23 55 chr9 18332386 18333069 -123938375 + L1MB7 LINE L1 4663 5367 -817 2188 107 0 3 chr9 18333069 18333367 -123938077 + AluSq SINE Alu 1 297 -16 4001 188 23 55 chr9 18333367 18333740 -123937704 + L1MB7 LINE L1 5367 5751 -433 681 221 0 8 chr9 18333740 18333862 -123937582 + FLAM_A SINE Alu 1 121 -12 4001 188 23 55 chr9 18333862 18334377 -123937067 + L1MB7 LINE L1 5751 6184 0 22 0 0 0 chr9 18334764 18334786 -123936658 + AT_rich Low_complexity Low_complexity 1 22 0 550 281 166 5 chr9 18335996 18336213 -123935231 - MIR SINE MIR -9 253 2 392 204 9 56 chr9 18336227 18336335 -123935109 - L1ME LINE L1 -302 5819 5717 3213 209 135 14 chr9 18336372 18336610 -123934834 - L1ME LINE L1 -756 5390 5182 2170 123 3 0 chr9 18336610 18336918 -123934526 - AluSc SINE Alu 0 309 1 3213 209 135 14 chr9 18336918 18337587 -123933857 - L1ME LINE L1 -964 5182 4404 225 248 20 50 chr9 18337981 18338082 -123933362 - MLT1J2 LTR MaLR -2 448 351 285 214 165 29 chr9 18338208 18338311 -123933133 - MLT1J LTR MaLR -275 212 59 615 215 133 0 chr9 18338418 18338574 -123932870 - MER5A DNA MER1_type -6 183 4 2488 70 0 6 chr9 18339011 18339324 -123932120 + AluY SINE Alu 1 311 0 1918 114 4 4 chr9 18339485 18339757 -123931687 + AluSc SINE Alu 37 308 -1 1436 174 56 10 chr9 18339799 18340087 -123931357 + L1MB1 LINE L1 4817 5117 -1029 4128 159 16 39 chr9 18340088 18340146 -123931298 + L1MB1 LINE L1 5443 5501 -667 1807 170 0 19 chr9 18340146 18340458 -123930986 + AluJo SINE Alu 1 306 -6 4128 159 16 39 chr9 18340458 18340757 -123930687 + L1MB1 LINE L1 5501 5805 -363 2604 52 0 3 chr9 18340757 18341064 -123930380 + AluY SINE Alu 1 306 -5 4128 159 16 39 chr9 18341064 18341117 -123930327 + L1MB1 LINE L1 5805 5858 -310 1977 125 3 10 chr9 18341117 18341420 -123930024 + AluSx SINE Alu 1 301 -11 4128 159 16 39 chr9 18341420 18341749 -123929695 + L1MB1 LINE L1 5858 6167 -1 2252 91 50 0 chr9 18341785 18342082 -123929362 + AluSx SINE Alu 1 312 0 2284 70 0 3 chr9 18342504 18342817 -123928627 - AluY SINE Alu 0 312 1 6635 83 7 0 chr9 18343714 18344595 -123926849 + L1PA13 LINE L1 5277 6163 0 2369 87 7 0 chr9 18344597 18344906 -123926538 + AluY SINE Alu 1 311 0 579 100 0 20 chr9 18344907 18345007 -123926437 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 7573 152 35 11 chr9 18345017 18346365 -123925079 - L1 LINE L1 -1183 4963 3649 983 84 36 6 chr9 18346365 18346532 -123924912 + CT-rich Low_complexity Low_complexity 1 172 0 2007 133 3 3 chr9 18346535 18346835 -123924609 - AluSq SINE Alu -9 304 5 7573 152 35 11 chr9 18346835 18346862 -123924582 - L1 LINE L1 -2498 3648 3623 2568 52 10 0 chr9 18346862 18347170 -123924274 - AluY SINE Alu 0 311 1 271 63 0 175 chr9 18347312 18347348 -123924096 + MER53 DNA DNA 1 23 -166 1964 161 39 6 chr9 18347348 18347683 -123923761 + L1MC1 LINE L1 5988 6333 0 271 63 0 175 chr9 18347683 18347709 -123923735 + MER53 DNA DNA 23 52 -137 1331 171 105 8 chr9 18347759 18348016 -123923428 - AluJb SINE Alu -30 282 1 640 148 109 0 chr9 18348018 18348146 -123923298 + MER53 DNA DNA 45 186 -3 187 254 146 0 chr9 18348254 18348309 -123923135 + L2 LINE L2 3251 3313 0 2172 100 3 3 chr9 18348579 18348868 -123922576 + AluSx SINE Alu 1 289 -23 431 45 120 0 chr9 18348868 18349001 -123922443 + (TA)n Simple_repeat Simple_repeat 2 150 0 1379 176 3 107 chr9 18349186 18349412 -123922032 + L1M4 LINE L1 4520 4768 -1378 264 30 0 0 chr9 18349412 18349445 -123921999 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 1792 130 7 47 chr9 18349454 18349753 -123921691 - AluSq SINE Alu -26 287 1 1379 176 3 107 chr9 18349753 18349880 -123921564 + L1M4 LINE L1 4776 4845 -1301 3656 155 85 79 chr9 18349960 18350780 -123920664 + MER21B LTR ERV1 13 837 -26 2966 228 39 34 chr9 18350781 18351037 -123920407 - L1M4 LINE L1 -386 5735 5482 2060 116 24 0 chr9 18351037 18351329 -123920115 - AluSq SINE Alu -14 299 1 2966 228 39 34 chr9 18351329 18351990 -123919454 - L1M4 LINE L1 -639 5482 3527 2254 87 3 50 chr9 18352148 18352471 -123918973 + AluY SINE Alu 1 308 -3 2087 150 3 10 chr9 18352645 18352958 -123918486 - AluSx SINE Alu -1 311 1 2189 104 0 13 chr9 18352995 18353294 -123918150 - AluSc SINE Alu -14 295 1 203 156 0 0 chr9 18354337 18354369 -123917075 + (TG)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr9 18354464 18354487 -123916957 + AT_rich Low_complexity Low_complexity 1 23 0 2349 60 0 0 chr9 18355124 18355451 -123915993 - AluY SINE Alu 0 327 1 2228 215 30 57 chr9 18356423 18357226 -123914218 - Zaphod DNA AcHobo -1 825 118 218 250 45 0 chr9 18357232 18357276 -123914168 + L2 LINE L2 3240 3285 -28 2006 150 10 0 chr9 18357495 18357795 -123913649 - AluJo SINE Alu -4 308 6 215 329 14 0 chr9 18358551 18358624 -123912820 + MIR SINE MIR 30 103 -105 737 276 106 37 chr9 18359206 18359612 -123911832 + MLT1K LTR MaLR 147 580 -8 2278 97 0 0 chr9 18360439 18360729 -123910715 + AluSc SINE Alu 1 290 -19 312 311 51 137 chr9 18360902 18361147 -123910297 + L2 LINE L2 2825 3011 -261 1867 168 7 0 chr9 18361147 18361457 -123909987 - AluJo SINE Alu 0 312 1 312 311 51 137 chr9 18361457 18361684 -123909760 + L2 LINE L2 3011 3256 -16 188 348 82 39 chr9 18361779 18362012 -123909432 + L2 LINE L2 2816 3058 -214 2597 58 0 0 chr9 18362311 18362620 -123908824 - AluY SINE Alu -2 309 1 6526 82 10 0 chr9 18362622 18363500 -123907944 - L1PA13 LINE L1 0 6163 5277 3425 22 0 0 chr9 18363729 18364100 -123907344 + SVA Other Other 1015 1385 -1 26 0 0 0 chr9 18364100 18364126 -123907318 + AT_rich Low_complexity Low_complexity 1 26 0 2449 88 0 0 chr9 18364595 18364900 -123906544 + AluSc SINE Alu 1 305 -4 592 328 69 17 chr9 18364909 18365237 -123906207 - L1MC/D LINE L1 -473 5648 5338 1810 139 35 3 chr9 18365237 18365524 -123905920 - AluSx SINE Alu -16 296 1 592 328 69 17 chr9 18365524 18365535 -123905909 - L1MC/D LINE L1 -783 5338 5329 432 0 0 0 chr9 18365535 18365583 -123905861 + (TG)n Simple_repeat Simple_repeat 1 48 0 592 328 69 17 chr9 18365583 18365666 -123905778 - L1MC/D LINE L1 -792 5329 5296 376 293 62 51 chr9 18365674 18365930 -123905514 - L1MC/D LINE L1 -872 5274 5016 217 289 12 60 chr9 18367010 18367093 -123904351 + MIR SINE MIR 65 143 -119 288 348 119 17 chr9 18367237 18367355 -123904089 - MER91A DNA MER1_type -34 162 33 263 159 48 32 chr9 18367714 18367777 -123903667 + MLT1J LTR MaLR 446 509 -2 2387 98 15 70 chr9 18367884 18368109 -123903335 - THE1C LTR MaLR 0 375 139 2239 103 3 16 chr9 18368109 18368419 -123903025 + AluSg SINE Alu 1 306 -4 2387 98 15 70 chr9 18368419 18368532 -123902912 - THE1C LTR MaLR -236 139 60 2806 96 6 0 chr9 18368532 18368885 -123902559 - THE1A LTR MaLR 0 355 1 2387 98 15 70 chr9 18368885 18368942 -123902502 - THE1C LTR MaLR -315 60 1 355 293 53 30 chr9 18369019 18369152 -123902292 + MIR SINE MIR 77 212 -50 1559 200 23 0 chr9 18369160 18369460 -123901984 - AluJo SINE Alu -5 307 1 2163 107 3 7 chr9 18370397 18370695 -123900749 - AluSq SINE Alu -16 297 1 2258 112 0 0 chr9 18371075 18371371 -123900073 + AluSx SINE Alu 1 296 -16 2181 93 45 0 chr9 18371376 18371665 -123899779 + AluSx SINE Alu 1 302 -10 2029 125 81 36 chr9 18374755 18375114 -123896330 - THE1C LTR MaLR 0 375 1 1395 304 85 24 chr9 18375258 18375762 -123895682 + MLT1K LTR MaLR 13 547 -41 768 287 69 3 chr9 18376035 18376338 -123895106 - L1MB8 LINE L1 -244 5877 5555 1227 204 37 20 chr9 18376355 18376649 -123894795 + L1MB8 LINE L1 5879 6177 -1 195 129 0 0 chr9 18376968 18376999 -123894445 + (T)n Simple_repeat Simple_repeat 1 31 0 437 278 60 0 chr9 18378176 18378309 -123893135 + MIR SINE MIR 103 243 -19 2283 103 0 25 chr9 18378800 18379120 -123892324 + AluSx SINE Alu 1 312 0 2038 138 20 0 chr9 18379157 18379462 -123891982 + AluSx SINE Alu 1 311 -1 257 49 73 0 chr9 18379470 18379511 -123891933 + A-rich Low_complexity Low_complexity 2 45 0 254 356 25 6 chr9 18380255 18380415 -123891029 + LTR16C LTR ERVL 329 491 0 386 305 83 85 chr9 18380552 18380975 -123890469 + L2 LINE L2 2250 2671 -643 3991 210 44 43 chr9 18381604 18382778 -123888666 + L1MA9 LINE L1 5118 6274 -38 217 283 38 0 chr9 18382815 18382868 -123888576 + MIR SINE MIR 56 110 -98 1995 253 43 15 chr9 18383317 18383855 -123887589 - HsTC2 DNA Tc2 -65 1833 1281 319 274 126 37 chr9 18383852 18383987 -123887457 - HsTC2 DNA Tc2 -1750 148 2 * 207 203 73 112 chr9 18384022 18384055 -123887389 - MIR SINE MIR -77 131 98 1856 139 0 21 chr9 18384055 18384343 -123887101 + AluJo SINE Alu 1 282 -30 224 0 65 0 chr9 18384346 18384377 -123887067 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 207 203 73 112 chr9 18384377 18384493 -123886951 - MIR SINE MIR -112 96 1 192 77 0 0 chr9 18385128 18385154 -123886290 + (TA)n Simple_repeat Simple_repeat 1 26 0 2496 80 0 0 chr9 18387566 18387867 -123883577 + AluSc SINE Alu 1 301 -8 313 291 29 62 chr9 18388393 18388603 -123882841 + L1ME LINE L1 4862 5064 -1082 324 316 44 44 chr9 18388680 18388905 -123882539 + L1ME LINE L1 5175 5399 -747 1495 277 74 5 chr9 18388917 18389347 -123882097 + LTR16B LTR ERVL 3 462 -2 291 231 51 51 chr9 18389404 18389521 -123881923 + L1ME LINE L1 5545 5661 -509 2425 68 0 0 chr9 18389527 18389821 -123881623 + AluY SINE Alu 1 294 -17 1175 149 54 18 chr9 18389822 18390043 -123881401 + L1MD2 LINE L1 6121 6349 -10 680 256 93 83 chr9 18390053 18390915 -123880529 + L1ME1 LINE L1 5162 6020 -101 1523 99 5 22 chr9 18393181 18393403 -123878041 - AluSx SINE Alu -94 218 1 591 354 8 16 chr9 18393584 18393827 -123877617 + MIR SINE MIR 1 241 -21 2274 108 0 3 chr9 18394378 18394685 -123876759 + AluSx SINE Alu 1 306 -6 206 287 139 9 chr9 18394833 18394948 -123876496 - MIR SINE MIR -55 207 78 3922 109 10 2 chr9 18394981 18395566 -123875878 + L1P LINE L1 4659 5248 -898 22 0 0 0 chr9 18395740 18395762 -123875682 + AT_rich Low_complexity Low_complexity 1 22 0 2176 98 17 7 chr9 18395871 18396167 -123875277 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr9 18396301 18396322 -123875122 + AT_rich Low_complexity Low_complexity 1 21 0 493 298 67 6 chr9 18396845 18397023 -123874421 - MIR SINE MIR -59 203 15 2099 128 0 0 chr9 18397212 18397509 -123873935 + AluSx SINE Alu 1 297 -15 1773 152 0 17 chr9 18397521 18397823 -123873621 + 7SLRNA srpRNA srpRNA 1 297 -23 34 45 0 15 chr9 18397828 18397862 -123873582 + AT_rich Low_complexity Low_complexity 1 35 -30 1803 188 0 7 chr9 18397862 18398170 -123873274 - AluJo SINE Alu -6 306 1 34 45 0 15 chr9 18398170 18398201 -123873243 + AT_rich Low_complexity Low_complexity 35 65 0 2235 113 0 3 chr9 18398472 18398782 -123872662 - AluSc SINE Alu 0 309 1 6662 89 43 0 chr9 18398791 18399790 -123871654 - L1PA8A LINE L1 -3 6128 5116 370 182 25 25 chr9 18399960 18400081 -123871363 + T-rich Low_complexity Low_complexity 2 122 0 1776 125 50 11 chr9 18400248 18400527 -123870917 + AluSx SINE Alu 12 301 -11 22 0 0 0 chr9 18400529 18400551 -123870893 + AT_rich Low_complexity Low_complexity 1 22 0 341 238 176 11 chr9 18400973 18401284 -123870160 - MLT1J LTR MaLR -2 493 118 6562 30 4 228 chr9 18401586 18402880 -123868564 - SVA Other Other -376 1010 7 237 108 0 0 chr9 18403128 18403165 -123868279 + (T)n Simple_repeat Simple_repeat 1 37 0 2206 121 0 3 chr9 18403189 18403494 -123867950 + AluSx SINE Alu 1 304 -8 36 23 0 0 chr9 18403648 18403691 -123867753 + AT_rich Low_complexity Low_complexity 1 43 0 2068 118 27 3 chr9 18404169 18404465 -123866979 + AluSx SINE Alu 1 303 -9 723 203 0 16 chr9 18404625 18404753 -123866691 + FLAM_C SINE Alu 2 127 -6 320 220 312 9 chr9 18405136 18405245 -123866199 - MIR SINE MIR 0 262 121 769 254 228 27 chr9 18405297 18405631 -123865813 + L2 LINE L2 2485 2885 -429 629 184 34 61 chr9 18405742 18405889 -123865555 + L2 LINE L2 3171 3313 0 204 359 0 16 chr9 18405902 18405966 -123865478 + MIR SINE MIR 25 87 -175 2179 121 3 3 chr9 18405991 18406297 -123865147 + AluSx SINE Alu 1 306 -6 212 306 204 0 chr9 18406520 18406618 -123864826 - L2 LINE L2 -6 3307 3190 33 66 0 0 chr9 18406726 18406787 -123864657 + AT_rich Low_complexity Low_complexity 1 61 0 2122 108 64 28 chr9 18408152 18408512 -123862932 + THE1C LTR MaLR 1 373 -2 2498 81 0 0 chr9 18409854 18410161 -123861283 - AluY SINE Alu -4 307 1 180 0 0 0 chr9 18410165 18410185 -123861259 + (T)n Simple_repeat Simple_repeat 1 20 0 261 128 0 0 chr9 18411565 18411612 -123859832 + (TG)n Simple_repeat Simple_repeat 2 48 0 466 251 142 6 chr9 18412918 18413101 -123858343 - LTR33 LTR ERVL 0 521 314 620 246 97 5 chr9 18413171 18413366 -123858078 - LTR33 LTR ERVL -306 215 3 231 269 90 0 chr9 18413373 18413451 -123857993 + MIR SINE MIR 46 130 -132 1846 209 78 49 chr9 18413676 18413889 -123857555 - L1ME1 LINE L1 -5 6161 5956 2881 86 54 19 chr9 18413889 18414318 -123857126 - MLT2A1 LTR ERVL 0 444 1 1846 209 78 49 chr9 18414318 18414734 -123856710 - L1ME1 LINE L1 -210 5956 5514 3171 126 67 7 chr9 18414742 18415296 -123856148 + L1MB2 LINE L1 5583 6169 -2 206 307 95 29 chr9 18415805 18415983 -123855461 + L2 LINE L2 258 3042 -230 648 147 10 0 chr9 18416144 18416246 -123855198 - FLAM_A SINE Alu -9 133 31 212 273 225 29 chr9 18417148 18417237 -123854207 - MIR SINE MIR -7 255 185 2038 106 39 0 chr9 18417237 18417519 -123853925 - AluSx SINE Alu -19 293 1 212 273 225 29 chr9 18417519 18417638 -123853806 - MIR SINE MIR -77 185 6 181 293 12 61 chr9 18417658 18417740 -123853704 + MER5B DNA MER1_type 96 173 -5 378 254 152 6 chr9 18418072 18418237 -123853207 - HAL1b LINE L1 -254 1094 906 333 295 62 70 chr9 18418393 18418451 -123852993 - HAL1 LINE L1 -1182 1325 1268 2107 109 33 0 chr9 18418451 18418753 -123852691 - AluSx SINE Alu 0 312 1 333 295 62 70 chr9 18418753 18418921 -123852523 - HAL1 LINE L1 -1239 1268 1101 2233 120 3 0 chr9 18420009 18420309 -123851135 + AluSq SINE Alu 1 301 -12 6758 95 22 4 chr9 18420322 18421387 -123850057 + L1MA1 LINE L1 5212 6295 -7 363 283 9 9 chr9 18421433 18421539 -123849905 - MIR SINE MIR -2 260 155 435 180 27 18 chr9 18421544 18421655 -123849789 - LTR26 LTR ERV1 0 603 492 699 209 6 211 chr9 18421664 18422101 -123849343 - LTR8 LTR ERV1 -362 365 1 456 333 20 0 chr9 18422102 18422249 -123849195 - MIR SINE MIR -111 151 2 345 317 139 14 chr9 18422481 18422689 -123848755 - MIR SINE MIR 0 262 29 1476 237 115 40 chr9 18422689 18423179 -123848265 + MLT1E2 LTR MaLR 1 453 -173 195 42 0 0 chr9 18423179 18423203 -123848241 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1431 190 7 66 chr9 18423203 18423380 -123848064 - AluJo SINE Alu -25 287 134 2162 125 7 0 chr9 18423380 18423669 -123847775 + AluSc SINE Alu 3 293 -16 1431 190 7 66 chr9 18423669 18423796 -123847648 - AluJo SINE Alu -178 134 1 1476 237 115 40 chr9 18423796 18423886 -123847558 + MLT1E2 LTR MaLR 452 626 0 315 339 0 47 chr9 18424067 18424194 -123847250 + L2 LINE L2 2959 3079 -193 342 0 0 0 chr9 18424576 18424614 -123846830 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr9 18425585 18425623 -123845821 + AT_rich Low_complexity Low_complexity 1 38 0 207 176 0 0 chr9 18426900 18426934 -123844510 + (TG)n Simple_repeat Simple_repeat 2 35 0 2466 77 0 0 chr9 18427484 18427795 -123843649 + AluY SINE Alu 1 311 0 1253 129 0 16 chr9 18427878 18428064 -123843380 + AluSg/x SINE Alu 106 288 -24 414 238 23 21 chr9 18429147 18429260 -123842184 + MIR SINE MIR 23 113 -95 381 331 64 17 chr9 18430728 18430900 -123840544 - L2 LINE L2 0 3313 3134 1266 282 93 9 chr9 18431520 18431984 -123839460 + HERV16 LTR ERVL 816 1318 -3678 518 283 28 67 chr9 18432274 18432557 -123838887 + HERV16 LTR ERVL 3241 3512 -1484 21 0 0 0 chr9 18433263 18433284 -123838160 + AT_rich Low_complexity Low_complexity 1 21 0 1405 188 66 57 chr9 18434133 18434575 -123836869 - Charlie4a DNA MER1_type -31 477 32 397 247 242 16 chr9 18434599 18434785 -123836659 - MIR SINE MIR -8 254 27 317 219 65 49 chr9 18436579 18436766 -123834678 - Tigger1 DNA MER2_type -797 800 675 399 277 38 19 chr9 18436923 18437082 -123834362 - MARNA DNA Mariner -27 559 398 876 240 59 18 chr9 18437979 18438200 -123833244 + MIR SINE MIR 12 241 -21 1741 191 171 7 chr9 18438336 18438776 -123832668 + MLT2B1 LTR ERVL 1 512 -8 438 297 20 27 chr9 18439370 18439549 -123831895 + MIR SINE MIR 31 206 -56 1339 177 23 16 chr9 18441148 18441446 -123829998 - MER61B LTR ERV1 -29 396 3 22 0 0 0 chr9 18442165 18442187 -123829257 + AT_rich Low_complexity Low_complexity 1 22 0 510 299 25 6 chr9 18443993 18444150 -123827294 + L2 LINE L2 2593 2752 -562 296 296 20 0 chr9 18444235 18444333 -123827111 - MER103 DNA DNA -7 159 60 1085 238 5 0 chr9 18444787 18445010 -123826434 - MER58A DNA MER1_type 0 224 1 23 0 0 0 chr9 18445180 18445203 -123826241 + AT_rich Low_complexity Low_complexity 1 23 0 1869 157 14 10 chr9 18445203 18445497 -123825947 - AluJb SINE Alu -17 295 1 777 283 94 17 chr9 18446274 18446624 -123824820 + MLT1J1 LTR MaLR 70 446 0 28 0 0 0 chr9 18447152 18447180 -123824264 + AT_rich Low_complexity Low_complexity 1 28 0 1696 86 0 5 chr9 18447605 18447825 -123823619 - AluSq SINE Alu -6 307 89 2217 228 96 27 chr9 18448334 18448417 -123823027 + L1ME3A LINE L1 5244 5320 -850 2393 95 0 13 chr9 18448417 18448732 -123822712 + AluY SINE Alu 1 311 0 2217 228 96 27 chr9 18448732 18448753 -123822691 + L1ME3A LINE L1 5320 5338 -832 1503 104 3 190 chr9 18448753 18449117 -123822327 + AluJb SINE Alu 1 296 -6 2217 228 96 27 chr9 18449117 18449852 -123821592 + L1ME3A LINE L1 5338 6142 -28 748 326 13 0 chr9 18449869 18450108 -123821336 + MIR SINE MIR 20 261 -1 23 78 0 0 chr9 18450528 18450579 -123820865 + AT_rich Low_complexity Low_complexity 1 51 0 415 301 9 0 chr9 18451014 18451127 -123820317 + L2 LINE L2 3200 3313 0 22 56 0 0 chr9 18451179 18451215 -123820229 + AT_rich Low_complexity Low_complexity 1 36 0 505 278 64 0 chr9 18451964 18452151 -123819293 - L1MB2 LINE L1 -3 6168 5970 2560 71 0 3 chr9 18452214 18452524 -123818920 - AluSq SINE Alu -4 309 1 260 309 50 53 chr9 18452735 18453155 -123818289 - L1MC4a LINE L1 -237 5884 5520 1114 182 0 0 chr9 18453185 18453366 -123818078 + AluJb SINE Alu 129 309 -3 380 264 130 34 chr9 18453630 18453869 -123817575 - L1ME3A LINE L1 -219 5951 5690 3852 222 59 112 chr9 18453908 18455895 -123815549 - Charlie1 DNA MER1_type 0 2761 908 2220 66 0 17 chr9 18455895 18456208 -123815236 + AluY SINE Alu 1 308 0 3852 222 59 112 chr9 18456208 18456511 -123814933 - Charlie1 DNA MER1_type -1853 908 591 4064 172 36 8 chr9 18456518 18457339 -123814105 - L1MB3 LINE L1 -12 6171 5328 1518 238 31 46 chr9 18457455 18457994 -123813450 - Charlie1 DNA MER1_type -2228 533 3 2263 87 0 13 chr9 18457995 18458293 -123813151 - AluY SINE Alu -17 294 1 339 349 0 8 chr9 18458299 18458431 -123813013 - L1ME3A LINE L1 -501 5661 5531 1334 272 74 5 chr9 18458474 18458904 -123812540 - LTR16B LTR ERVL -2 462 3 337 316 44 44 chr9 18458916 18459141 -123812303 - L1ME3A LINE L1 -747 5399 5175 242 291 29 62 chr9 18459218 18459428 -123812016 - L1ME3A LINE L1 -1082 5064 4862 2495 80 0 0 chr9 18459954 18460255 -123811189 - AluSc SINE Alu -8 301 1 192 77 0 0 chr9 18462667 18462693 -123808751 + (TA)n Simple_repeat Simple_repeat 1 26 0 207 203 73 112 chr9 18463328 18463444 -123808000 + MIR SINE MIR 1 120 -110 224 0 65 0 chr9 18463444 18463475 -123807969 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1856 139 0 21 chr9 18463478 18463766 -123807678 - AluJo SINE Alu -30 282 1 207 203 73 112 chr9 18463766 18463799 -123807645 + MIR SINE MIR 122 153 -77 319 274 126 37 chr9 18463834 18463969 -123807475 + HsTC2 DNA Tc2 2 148 -1750 * 1995 253 43 15 chr9 18463966 18464504 -123806940 + HsTC2 DNA Tc2 1281 1833 -65 217 283 38 0 chr9 18464953 18465006 -123806438 - MIR SINE MIR -98 110 56 4027 210 44 41 chr9 18465043 18466215 -123805229 - L1MA9 LINE L1 -38 6274 5118 410 307 80 85 chr9 18466844 18467268 -123804176 - L2 LINE L2 -643 2671 2250 254 356 25 6 chr9 18467405 18467565 -123803879 - LTR16C LTR ERVL 0 491 329 257 49 73 0 chr9 18468308 18468349 -123803095 + T-rich Low_complexity Low_complexity 2 45 0 2038 138 20 0 chr9 18468357 18468662 -123802782 - AluSx SINE Alu -1 311 1 2283 103 0 25 chr9 18468699 18469019 -123802425 - AluSx SINE Alu 0 312 1 437 278 60 0 chr9 18469510 18469643 -123801801 - MIR SINE MIR -19 243 103 188 65 0 32 chr9 18470820 18470851 -123800593 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 1227 204 37 20 chr9 18471169 18471463 -123799981 - L1MB8 LINE L1 -1 6177 5879 768 287 69 3 chr9 18471480 18471783 -123799661 + L1MB8 LINE L1 5555 5877 -244 1395 304 85 24 chr9 18472056 18472560 -123798884 - MLT1K LTR MaLR -41 547 13 2029 125 81 36 chr9 18472704 18473063 -123798381 + THE1C LTR MaLR 1 375 0 2172 94 45 0 chr9 18476153 18476441 -123795003 - AluSx SINE Alu -11 301 1 2258 112 0 0 chr9 18476446 18476742 -123794702 - AluSx SINE Alu -16 296 1 22 0 0 0 chr9 18476994 18477016 -123794428 + AT_rich Low_complexity Low_complexity 1 22 0 2176 98 17 7 chr9 18477125 18477421 -123794023 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr9 18477555 18477576 -123793868 + AT_rich Low_complexity Low_complexity 1 21 0 493 298 67 6 chr9 18478099 18478277 -123793167 - MIR SINE MIR -59 203 15 2099 128 0 0 chr9 18478466 18478763 -123792681 + AluSx SINE Alu 1 297 -15 1773 152 0 17 chr9 18478775 18479077 -123792367 + 7SLRNA srpRNA srpRNA 1 297 -23 34 45 0 15 chr9 18479082 18479116 -123792328 + AT_rich Low_complexity Low_complexity 1 35 -30 1803 188 0 7 chr9 18479116 18479424 -123792020 - AluJo SINE Alu -6 306 1 34 45 0 15 chr9 18479424 18479455 -123791989 + AT_rich Low_complexity Low_complexity 35 65 0 2235 113 0 3 chr9 18479726 18480036 -123791408 - AluSc SINE Alu 0 309 1 6662 89 14 1 chr9 18480045 18481504 -123789940 - L1PA8A LINE L1 -3 6128 4659 206 287 139 9 chr9 18481537 18481652 -123789792 + MIR SINE MIR 78 207 -55 2296 104 0 3 chr9 18481800 18482107 -123789337 - AluSx SINE Alu -6 306 1 591 354 8 16 chr9 18482658 18482901 -123788543 - MIR SINE MIR -21 241 1 2313 92 3 13 chr9 18483082 18483396 -123788048 + AluSx SINE Alu 1 311 -1 189 0 0 0 chr9 18483658 18483679 -123787765 + (TA)n Simple_repeat Simple_repeat 1 21 0 2560 45 3 6 chr9 18483681 18483993 -123787451 - AluY SINE Alu 0 311 1 754 142 0 0 chr9 18485032 18485138 -123786306 + AluSg/x SINE Alu 188 293 -19 1693 259 146 21 chr9 18486137 18486802 -123784642 - L1ME3A LINE L1 -6 6164 5417 23 33 0 0 chr9 18490345 18490375 -123781069 + AT_rich Low_complexity Low_complexity 1 30 0 2064 123 7 3 chr9 18491109 18491418 -123780026 - AluSx SINE Alu -2 310 1 266 389 43 0 chr9 18491657 18491796 -123779648 - L2 LINE L2 -2 3270 3126 2366 92 10 0 chr9 18491870 18492174 -123779270 + AluSp SINE Alu 1 307 -6 672 133 0 105 chr9 18492744 18492887 -123778557 + MER112 DNA MER1_type 126 253 -7 1734 188 13 10 chr9 18493111 18493409 -123778035 - AluJb SINE Alu -12 300 2 2261 81 10 3 chr9 18494181 18494476 -123776968 + AluSq SINE Alu 1 297 -16 22 56 0 0 chr9 18494654 18494690 -123776754 + AT_rich Low_complexity Low_complexity 1 36 0 1082 249 102 43 chr9 18495326 18495863 -123775581 - L1ME4a LINE L1 -1 6120 5552 330 329 144 0 chr9 18496421 18496567 -123774877 + MIR SINE MIR 31 197 -65 2809 63 0 0 chr9 18496662 18496994 -123774450 + L1PA7 LINE L1 5818 6149 -5 6637 129 29 94 chr9 18497278 18498647 -123772797 + pTR5 LTR ERV1 742 2021 -417 289 248 30 20 chr9 18498648 18498749 -123772695 + LTR30 LTR ERV1 541 642 -80 1194 101 34 6 chr9 18498750 18498928 -123772516 + LTR12 LTR ERV1 480 662 -52 304 205 193 4 chr9 18498928 18499034 -123772410 + MIR SINE MIR 33 156 -59 601 275 21 21 chr9 18499035 18499097 -123772347 - MIR SINE MIR -1 261 200 2109 136 0 7 chr9 18499097 18499399 -123772045 - AluSx SINE Alu -12 300 1 601 275 21 21 chr9 18499399 18499525 -123771919 - MIR SINE MIR -61 201 73 1966 148 10 0 chr9 18499808 18500112 -123771332 + AluSq SINE Alu 1 307 -6 288 111 0 22 chr9 18500161 18500206 -123771238 - MLT2B1 LTR ERVL 0 464 421 252 0 0 0 chr9 18500212 18500240 -123771204 + (TTCCC)n Simple_repeat Simple_repeat 1 28 0 700 155 35 17 chr9 18500243 18500417 -123771027 + CT-rich Low_complexity Low_complexity 2 178 0 2074 167 57 50 chr9 18500439 18500876 -123770568 - MLT2B1 LTR ERVL -80 440 1 297 240 0 13 chr9 18500876 18500951 -123770493 - MER117 DNA MER1_type -116 81 8 530 274 52 7 chr9 18501469 18501604 -123769840 + MIR3 SINE MIR 20 160 -48 1785 65 0 0 chr9 18501846 18502060 -123769384 + AluY SINE Alu 87 300 -11 1693 259 146 21 chr9 18502988 18503653 -123767791 + L1ME3A LINE L1 5417 6164 -6 754 142 0 0 chr9 18504652 18504758 -123766686 - AluSg/x SINE Alu -19 291 186 2481 36 3 10 chr9 18505797 18506099 -123765345 + AluY SINE Alu 1 300 -11 24 0 0 0 chr9 18506194 18506218 -123765226 + AT_rich Low_complexity Low_complexity 1 24 0 1911 118 7 0 chr9 18506218 18506488 -123764956 - AluSq SINE Alu -5 308 37 586 290 71 29 chr9 18507275 18507681 -123763763 + MLT2E LTR ERVL 1 663 0 201 39 0 0 chr9 18508297 18508323 -123763121 + (TTA)n Simple_repeat Simple_repeat 2 27 0 234 187 143 33 chr9 18508406 18508497 -123762947 + MER113 DNA MER1_type? 1 101 -420 397 191 23 69 chr9 18508504 18508667 -123762777 - HsTC2 DNA Tc2 0 1898 1749 2214 97 45 0 chr9 18508670 18508958 -123762486 + AluSx SINE Alu 1 301 -11 234 300 0 0 chr9 18509279 18509349 -123762095 - HsTC2 DNA Tc2 -1796 102 33 778 234 228 19 chr9 18509386 18509706 -123761738 + MER113 DNA MER1_type? 132 518 -3 2146 122 0 0 chr9 18509727 18510021 -123761423 - AluSq SINE Alu -19 294 1 1671 201 99 33 chr9 18510242 18510801 -123760643 - MLT1E2 LTR MaLR -6 620 1 21 57 0 0 chr9 18511933 18511968 -123759476 + AT_rich Low_complexity Low_complexity 1 35 0 2317 106 13 0 chr9 18512446 18512747 -123758697 + AluSq SINE Alu 1 305 -8 889 246 20 0 chr9 18512999 18513194 -123758250 + MIR SINE MIR 8 206 -56 251 336 87 19 chr9 18513238 18513342 -123758102 + L2 LINE L2 271 381 -2933 208 378 53 20 chr9 18513463 18513614 -123757830 + L2 LINE L2 577 732 -2582 2933 176 40 4 chr9 18513621 18514144 -123757300 + MER44D DNA MER2_type 6 602 -3 2242 92 7 0 chr9 18514359 18514652 -123756792 - AluSq SINE Alu -18 295 1 2278 81 0 3 chr9 18515319 18515604 -123755840 + AluSg SINE Alu 3 286 -24 352 243 44 66 chr9 18515714 18515759 -123755685 - L1ME4a LINE L1 -211 5910 5866 1642 168 61 18 chr9 18515759 18515832 -123755612 - MER2 DNA MER2_type -1 343 275 1917 164 0 0 chr9 18515832 18516124 -123755320 + AluJb SINE Alu 1 292 -20 1642 168 61 18 chr9 18516124 18516378 -123755066 - MER2 DNA MER2_type -69 275 2 352 243 44 66 chr9 18516378 18516513 -123754931 - L1ME4a LINE L1 -255 5866 5734 2047 81 0 0 chr9 18516672 18516931 -123754513 + AluY SINE Alu 41 299 -12 360 315 59 9 chr9 18517027 18517246 -123754198 - L1ME4a LINE L1 -462 5659 5430 820 182 38 19 chr9 18517318 18517477 -123753967 + FRAM SINE Alu 2 163 -3 495 263 0 0 chr9 18517593 18517707 -123753737 + MLT1J1 LTR MaLR 6 119 -327 1013 273 122 35 chr9 18517725 18518158 -123753286 - MLT1E2 LTR MaLR -81 497 52 588 150 60 15 chr9 18518752 18518885 -123752559 - L1MB4 LINE L1 -4 6176 6038 1573 204 18 0 chr9 18519022 18519306 -123752138 + AluJo SINE Alu 1 289 -23 234 0 0 0 chr9 18519316 18519342 -123752102 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2335 87 0 3 chr9 18520176 18520474 -123750970 + AluSq SINE Alu 1 297 -16 22 35 0 0 chr9 18520653 18520682 -123750762 + AT_rich Low_complexity Low_complexity 1 29 0 1013 307 36 16 chr9 18523707 18524153 -123747291 - L1ME3A LINE L1 -230 5940 5486 266 153 17 0 chr9 18524174 18524233 -123747211 + (TA)n Simple_repeat Simple_repeat 1 60 0 285 241 162 1 chr9 18524260 18524504 -123746940 - L1ME3A LINE L1 -739 5427 5162 1374 167 35 60 chr9 18524514 18524736 -123746708 - L1MD2 LINE L1 -10 6349 6136 2421 68 0 0 chr9 18524736 18525030 -123746414 - AluY SINE Alu -17 294 1 1374 167 35 60 chr9 18525030 18525124 -123746320 - L1MD2 LINE L1 -223 6136 6041 658 217 84 0 chr9 18525359 18525502 -123745942 - L1MD2 LINE L1 -318 6041 5887 471 134 24 0 chr9 18525573 18525655 -123745789 - Charlie4 DNA MER1_type 0 1961 1878 809 219 73 34 chr9 18525667 18525900 -123745544 - L1MD2 LINE L1 -495 5669 5428 2861 146 18 81 chr9 18525903 18526555 -123744889 - L1MC1 LINE L1 -5 6328 5718 2275 174 33 2 chr9 18526636 18527032 -123744412 - MSTB LTR MaLR -18 408 1 2465 205 38 34 chr9 18527032 18527390 -123744054 - L1MC1 LINE L1 -621 5723 5368 2221 108 3 13 chr9 18527390 18527705 -123743739 - AluSx SINE Alu 0 312 1 2465 205 38 34 chr9 18527705 18528436 -123743008 - L1MC1 LINE L1 -976 5368 4566 416 250 62 0 chr9 18528412 18528556 -123742888 - L1MD2 LINE L1 -729 5437 5285 * 1639 178 24 13 chr9 18528594 18529059 -123742385 - MLT2B1 LTR ERVL 0 520 2 1787 225 57 32 chr9 18529074 18529461 -123741983 - L1MD2 LINE L1 -898 5248 4837 1713 166 47 7 chr9 18529461 18529739 -123741705 + AluJo SINE Alu 12 300 -12 1787 225 57 32 chr9 18529739 18529981 -123741463 - L1MD2 LINE L1 -1309 4837 4603 735 218 224 92 chr9 18529983 18530062 -123741382 + MSTD LTR MaLR 1 68 -328 2358 70 3 7 chr9 18530062 18530360 -123741084 + AluSc SINE Alu 1 297 -12 735 218 224 92 chr9 18530360 18530566 -123740878 + MSTD LTR MaLR 68 343 -53 1734 156 3 59 chr9 18530566 18530887 -123740557 - AluJo SINE Alu -9 303 1 735 218 224 92 chr9 18530887 18530949 -123740495 + MSTD LTR MaLR 343 395 -1 421 309 46 7 chr9 18530954 18531236 -123740208 - L1MD2 LINE L1 -1545 4601 4309 2153 117 7 0 chr9 18531257 18531556 -123739888 + AluSp SINE Alu 1 301 -12 696 187 30 50 chr9 18531561 18531759 -123739685 - L1MA9 LINE L1 -5 7267 7074 23 68 0 0 chr9 18531759 18531803 -123739641 + AT_rich Low_complexity Low_complexity 1 44 0 7493 167 23 37 chr9 18531851 18532168 -123739276 - L1MA9 LINE L1 -182 7090 6770 7896 193 18 10 chr9 18532168 18534678 -123736766 - L1PA15 LINE L1 -1 6164 3638 7493 167 23 37 chr9 18534678 18535549 -123735895 - L1MA9 LINE L1 -502 6770 5888 2371 88 0 0 chr9 18535549 18535846 -123735598 - AluSc SINE Alu -12 297 1 7493 167 23 37 chr9 18535846 18537040 -123734404 - L1MA9 LINE L1 -1384 5888 4741 275 133 0 0 chr9 18537043 18537088 -123734356 - U5 snRNA snRNA -67 49 5 289 247 0 0 chr9 18537089 18537166 -123734278 - L1MD2 LINE L1 -2351 3795 3719 5569 248 71 18 chr9 18537574 18540810 -123730634 - L1MA9 LINE L1 -2410 4696 1589 755 234 0 13 chr9 18540857 18541015 -123730429 + Tigger1 DNA MER2_type 2 157 -2261 * 1304 148 0 9 chr9 18541004 18541221 -123730223 + Tigger1 DNA MER2_type 2202 2416 -2 973 174 14 50 chr9 18541221 18541439 -123730005 - L1MA9 LINE L1 -6786 244 35 2874 245 34 5 chr9 18541554 18542432 -123729012 - L1MD2 LINE L1 -3007 3139 2236 2345 99 3 0 chr9 18543371 18543683 -123727761 + AluSp SINE Alu 1 313 0 2196 102 17 0 chr9 18544305 18544599 -123726845 + AluSc SINE Alu 1 299 -10 490 300 54 77 chr9 18546127 18546440 -123725004 - L2 LINE L2 -50 3222 2917 260 83 125 0 chr9 18547769 18547817 -123723627 - MLT2A1 LTR ERVL 0 453 400 378 169 28 11 chr9 18547818 18547995 -123723449 + (TA)n Simple_repeat Simple_repeat 1 180 0 580 65 71 12 chr9 18548025 18548194 -123723250 + (TA)n Simple_repeat Simple_repeat 2 180 0 375 168 43 0 chr9 18548224 18548480 -123722964 + (TA)n Simple_repeat Simple_repeat 1 267 0 2936 86 5 10 chr9 18548481 18548887 -123722557 - MLT2A1 LTR ERVL -40 404 1 2571 195 11 6 chr9 18548939 18549468 -123721976 + L1MB4 LINE L1 5649 6180 0 466 313 79 45 chr9 18549995 18550439 -123721005 + MLT1J LTR MaLR 1 459 -52 2021 129 52 19 chr9 18550714 18551077 -123720367 - THE1C LTR MaLR 0 375 1 317 95 167 0 chr9 18551660 18551744 -123719700 - THE1C LTR MaLR -268 107 10 2261 57 60 20 chr9 18552136 18552435 -123719009 - AluY SINE Alu 0 311 1 552 225 58 0 chr9 18552504 18552624 -123718820 + L2 LINE L2 3187 3313 0 26 0 0 0 chr9 18553134 18553160 -123718284 + AT_rich Low_complexity Low_complexity 1 26 0 182 268 0 0 chr9 18553234 18553275 -123718169 - MIR SINE MIR 0 262 222 330 352 132 4 chr9 18554011 18554261 -123717183 - L2 LINE L2 -129 3184 2903 1777 160 11 18 chr9 18554457 18554759 -123716685 + AluJb SINE Alu 3 302 0 1331 327 110 31 chr9 18554873 18555021 -123716423 + L2 LINE L2 2211 2346 -967 2172 132 0 0 chr9 18555021 18555325 -123716119 - AluSx SINE Alu -8 304 1 1331 327 110 31 chr9 18555325 18556183 -123715261 + L2 LINE L2 2346 3303 -10 509 225 11 121 chr9 18556267 18556314 -123715130 + MER5B DNA MER1_type 1 52 -126 2394 80 0 3 chr9 18556314 18556614 -123714830 - AluY SINE Alu -12 299 1 509 225 11 121 chr9 18556614 18556748 -123714696 + MER5B DNA MER1_type 52 162 -16 674 310 155 3 chr9 18557062 18557359 -123714085 + L2 LINE L2 2971 3312 -1 2504 56 0 0 chr9 18557514 18557820 -123713624 - AluY SINE Alu -5 306 1 189 307 99 50 chr9 18558054 18558155 -123713289 - L2 LINE L2 -15 3298 3193 327 286 11 0 chr9 18558639 18558730 -123712714 + LTR33 LTR ERVL 1 92 -429 346 280 82 33 chr9 18558824 18558945 -123712499 + LTR33 LTR ERVL 264 378 -143 2142 75 41 10 chr9 18558945 18559239 -123712205 + AluY SINE Alu 1 303 -8 346 280 82 33 chr9 18559239 18559360 -123712084 + LTR33 LTR ERVL 378 518 -3 25 0 0 0 chr9 18560940 18560965 -123710479 + AT_rich Low_complexity Low_complexity 1 25 0 4177 169 20 35 chr9 18561361 18561583 -123709861 + L1MB5 LINE L1 5271 5495 -679 1895 65 4 15 chr9 18561583 18561824 -123709620 + L1PA5 LINE L1 5892 6148 -6 4177 169 20 35 chr9 18561824 18562464 -123708980 + L1MB5 LINE L1 5495 6120 -54 1953 148 7 0 chr9 18562480 18562783 -123708661 - AluSx SINE Alu -7 305 1 481 313 55 15 chr9 18563183 18563384 -123708060 + MIR SINE MIR 49 257 -5 2145 32 0 4 chr9 18565946 18566192 -123705252 - AluY SINE Alu -44 267 23 320 194 161 43 chr9 18567076 18567262 -123704182 + MER112 DNA MER1_type 47 254 -6 34 0 0 0 chr9 18568591 18568625 -123702819 + AT_rich Low_complexity Low_complexity 1 34 0 2217 113 0 0 chr9 18568667 18568969 -123702475 - AluSg SINE Alu -8 302 1 1836 148 4 0 chr9 18568985 18569255 -123702189 + AluSx SINE Alu 24 294 -18 1512 179 61 20 chr9 18569281 18569578 -123701866 - AluJo SINE Alu -3 309 1 1170 125 26 52 chr9 18569901 18570027 -123701417 + L1MA8 LINE L1 6062 6181 -110 1479 197 30 14 chr9 18570027 18570322 -123701122 - AluJb SINE Alu -12 300 1 1170 125 26 52 chr9 18570322 18570427 -123701017 + L1MA8 LINE L1 6181 6287 -4 252 301 72 0 chr9 18570433 18570626 -123700818 + L1M4 LINE L1 5023 5229 -917 242 200 176 12 chr9 18570653 18570738 -123700706 - MLT1J LTR MaLR -299 212 114 350 297 142 29 chr9 18570825 18571208 -123700236 - L2 LINE L2 -140 3173 2733 486 294 25 70 chr9 18571215 18571385 -123700059 - L2 LINE L2 -682 2632 2471 2545 84 0 0 chr9 18571385 18571693 -123699751 + AluSg SINE Alu 1 308 -2 486 294 25 70 chr9 18571693 18571723 -123699721 - L2 LINE L2 -843 2471 2441 1394 96 37 23 chr9 18571732 18571950 -123699494 - MER30 DNA MER1_type -9 221 1 747 270 46 23 chr9 18571961 18572220 -123699224 - L2 LINE L2 -874 2440 2176 467 210 117 25 chr9 18572220 18572382 -123699062 + MER5B DNA MER1_type 1 177 -1 572 254 86 29 chr9 18572392 18572601 -123698843 - L2 LINE L2 -1369 1945 1725 291 232 105 28 chr9 18574156 18574337 -123697107 + Charlie7 DNA MER1_type 2418 2612 0 2650 10 0 0 chr9 18574397 18574724 -123696720 - AluYb8 SINE Alu 0 327 1 285 283 101 51 chr9 18574724 18574862 -123696582 - MER5A DNA MER1_type -37 152 8 604 304 98 24 chr9 18575366 18575918 -123695526 - HAL1b LINE L1 -701 1692 344 2063 150 49 3 chr9 18575974 18576321 -123695123 + MLT1A1 LTR MaLR 1 363 -2 27 87 0 0 chr9 18576330 18576399 -123695045 + AT_rich Low_complexity Low_complexity 1 69 0 348 322 49 7 chr9 18577303 18577446 -123693998 - L1ME4a LINE L1 -295 5826 5678 269 232 61 12 chr9 18577474 18577556 -123693888 + MER20 DNA MER1_type 93 178 -41 590 232 23 64 chr9 18577623 18577843 -123693601 - L1MC5 LINE L1 -31 7930 7720 2483 217 46 7 chr9 18577849 18578392 -123693052 + MER82 DNA MER2_type 7 570 -83 30400 110 13 47 chr9 18578404 18579089 -123692355 - L1PA7 LINE L1 0 6154 5447 2516 77 0 0 chr9 18579089 18579400 -123692044 - AluY SINE Alu 0 311 1 30400 110 13 47 chr9 18579400 18584177 -123687267 - L1PA7 LINE L1 -707 5447 944 5688 61 1 0 chr9 18584177 18584864 -123686580 + LTR12 LTR ERV1 1 688 0 30400 110 13 47 chr9 18584864 18585767 -123685677 - L1PA7 LINE L1 -5210 944 12 338 214 0 12 chr9 18585776 18585860 -123685584 + MER82 DNA MER2_type 561 643 -10 315 234 80 57 chr9 18585861 18586160 -123685284 - L1MC5 LINE L1 -240 7721 7416 629 120 0 128 chr9 18586266 18586399 -123685045 - Tigger1 DNA MER2_type -1 2417 2302 1091 204 4 0 chr9 18587063 18587289 -123684155 + MLT2B1 LTR ERVL 1 227 -293 2161 139 34 5 chr9 18587326 18587714 -123683730 + Tigger4(Zombi) DNA MER2_type 2333 2731 0 1239 212 70 0 chr9 18587718 18588062 -123683382 - L1M4 LINE L1 -2229 3917 3550 2208 116 0 7 chr9 18588163 18588466 -123682978 - AluSx SINE Alu -11 301 1 3162 166 35 20 chr9 18588466 18589117 -123682327 + L1MD1 LINE L1 5582 6242 0 22 80 0 0 chr9 18589645 18589695 -123681749 + AT_rich Low_complexity Low_complexity 1 50 0 860 287 28 54 chr9 18591261 18591763 -123679681 + L1 LINE L1 1612 2100 -5068 2127 157 0 0 chr9 18591763 18592108 -123679336 - MER7A DNA MER2_type 0 346 4 920 202 65 28 chr9 18592111 18592433 -123679011 + L1 LINE L1 2118 2451 -4647 * 4585 170 25 9 chr9 18592413 18593414 -123678030 + L1 LINE L1 5096 6112 -1055 1569 193 7 14 chr9 18593582 18593878 -123677566 + AluJo SINE Alu 1 294 -18 398 221 0 21 chr9 18595079 18595174 -123676270 - HAL1 LINE L1 -383 2124 2032 2962 276 121 34 chr9 18595741 18597620 -123673824 - HAL1 LINE L1 -464 2043 1 2306 102 0 13 chr9 18597742 18598056 -123673388 + AluSg SINE Alu 1 310 0 1964 118 62 0 chr9 18598133 18598422 -123673022 + AluSx SINE Alu 1 307 -5 2106 133 0 0 chr9 18598745 18599046 -123672398 - AluSx SINE Alu -11 301 1 1756 180 32 0 chr9 18599047 18599330 -123672114 - AluSx SINE Alu -20 292 1 228 298 221 23 chr9 18599427 18599558 -123671886 - L2 LINE L2 -1 3271 3115 2334 141 0 19 chr9 18599776 18600146 -123671298 + THE1B LTR MaLR 1 363 -1 2398 97 0 0 chr9 18600662 18600972 -123670472 + AluY SINE Alu 1 310 -1 255 184 150 54 chr9 18602773 18602920 -123668524 + L1MC/D LINE L1 5320 5480 -2328 1633 301 73 12 chr9 18603020 18603584 -123667860 + L1M4b LINE L1 196 793 -6066 2843 238 111 5 chr9 18603587 18604674 -123666770 + L1 LINE L1 2715 3917 -2229 2161 139 34 5 chr9 18604678 18605066 -123666378 - Tigger4(Zombi) DNA MER2_type 0 2731 2333 1091 204 4 0 chr9 18605103 18605329 -123666115 - MLT2B1 LTR ERVL -293 227 1 629 120 0 128 chr9 18605993 18606126 -123665318 + Tigger1 DNA MER2_type 2302 2417 -1 315 234 80 57 chr9 18606232 18606531 -123664913 + L1MC5 LINE L1 7416 7721 -240 338 214 0 12 chr9 18606532 18606616 -123664828 - MER82 DNA MER2_type -10 643 561 30104 112 23 45 chr9 18606625 18607528 -123663916 + L1PA7 LINE L1 12 933 -5221 5688 61 1 0 chr9 18607528 18608215 -123663229 - LTR12 LTR ERV1 0 688 1 30104 112 23 45 chr9 18608215 18612984 -123658460 + L1PA7 LINE L1 933 5530 -624 2330 114 0 0 chr9 18612984 18613291 -123658153 + AluY SINE Alu 1 307 -4 30104 112 23 45 chr9 18613291 18613884 -123657560 + L1PA7 LINE L1 5530 6134 -20 5200 170 5 21 chr9 18613888 18615000 -123656444 + L1 LINE L1 4303 5396 -750 573 77 11 11 chr9 18615000 18615084 -123656360 + L1PA4 LINE L1 6058 6148 -7 699 277 90 27 chr9 18615444 18615845 -123655599 + L1M4 LINE L1 3623 4048 -2098 448 180 34 11 chr9 18616164 18616253 -123655191 + Tigger1 DNA MER2_type 2302 2392 -26 1730 234 48 24 chr9 18616253 18616877 -123654567 + L1 LINE L1 2594 3232 -2914 43307 42 2 1 chr9 18616882 18623019 -123648425 + L1PA4 LINE L1 7 6152 -3 6164 199 24 40 chr9 18623071 18623309 -123648135 + L1PA16 LINE L1 3867 4107 -2039 6372 82 40 16 chr9 18623309 18624327 -123647117 - L1PA8 LINE L1 0 6172 5145 6164 199 24 40 chr9 18624327 18625610 -123645834 + L1PA16 LINE L1 4107 5363 -783 22399 28 0 0 chr9 18625610 18629088 -123642356 + L1PA3 LINE L1 2674 6155 0 1088 163 70 23 chr9 18629088 18629494 -123641950 + LTR54 LTR ERV1 1 485 -25 3123 135 29 22 chr9 18629500 18630048 -123641396 + L1PA16 LINE L1 5352 5903 -263 * 4972 258 114 30 chr9 18630031 18631982 -123639462 + L1 LINE L1 3288 5403 -743 6641 187 26 32 chr9 18631996 18634534 -123636910 + L1MA4A LINE L1 3795 6303 0 3534 228 102 11 chr9 18634512 18635708 -123635736 + L1M4c LINE L1 1005 2309 -4075 * 1631 218 3 12 chr9 18637583 18637922 -123633522 + L1MCa LINE L1 158 493 -6071 1614 206 11 65 chr9 18637969 18638402 -123633042 + L1MCa LINE L1 498 907 -5657 927 211 79 94 chr9 18638463 18638805 -123632639 + MER57A LTR ERV1 63 399 -4 375 211 193 0 chr9 18638865 18638979 -123632465 + L1MCa LINE L1 786 921 -5124 1960 164 29 11 chr9 18638981 18639329 -123632115 + MLT2D LTR ERVL 6 359 -55 311 374 45 30 chr9 18639695 18639960 -123631484 + L2 LINE L2 2196 2464 -850 898 179 106 0 chr9 18641455 18641634 -123629810 + MSTA LTR MaLR 1 198 -230 513 86 0 0 chr9 18641634 18641704 -123629740 - L1P1 LINE L1 -509 5646 5577 609 40 0 0 chr9 18641704 18641779 -123629665 + L1PA6 LINE L1 6073 6147 -7 730 195 133 53 chr9 18641806 18642032 -123629412 + MSTA LTR MaLR 185 428 0 25 31 0 0 chr9 18642392 18642424 -123629020 + AT_rich Low_complexity Low_complexity 1 32 0 399 309 95 21 chr9 18644013 18644350 -123627094 + L1MCa LINE L1 1331 1692 -4862 1688 282 108 36 chr9 18644380 18645398 -123626046 - L2 LINE L2 -2 3311 2226 1161 224 9 9 chr9 18645406 18645638 -123625806 + Tigger7 DNA MER2_type 3 234 -499 611 184 10 0 chr9 18645640 18645743 -123625701 + Tigger7 DNA MER2_type 2383 2486 -1 2906 294 74 25 chr9 18645748 18646017 -123625427 - L2 LINE L2 -1104 2210 1956 2116 102 8 54 chr9 18646017 18646389 -123625055 - THE1A LTR MaLR 0 355 1 2906 294 74 25 chr9 18646389 18647171 -123624273 - L2 LINE L2 -1358 1956 1107 23 0 0 0 chr9 18647313 18647336 -123624108 + AT_rich Low_complexity Low_complexity 1 23 0 3181 96 2 72 chr9 18647769 18648299 -123623145 + L1PA13 LINE L1 5651 6143 -20 664 210 48 36 chr9 18648541 18648662 -123622782 + MER5A DNA MER1_type 19 144 -45 1209 218 121 18 chr9 18648662 18649001 -123622443 + MLT1A2 LTR MaLR 1 374 0 664 210 48 36 chr9 18649001 18649046 -123622398 + MER5A DNA MER1_type 144 187 -2 23 0 0 0 chr9 18649351 18649374 -123622070 + AT_rich Low_complexity Low_complexity 1 23 0 193 314 100 0 chr9 18653045 18653115 -123618329 + L2 LINE L2 2905 2981 -291 333 47 0 0 chr9 18653137 18653180 -123618264 + (TG)n Simple_repeat Simple_repeat 2 44 0 1687 173 4 0 chr9 18653180 18653452 -123617992 - AluJb SINE Alu -34 278 6 326 265 113 46 chr9 18654498 18654649 -123616795 + MIR SINE MIR 52 212 -50 239 252 69 30 chr9 18655008 18655139 -123616305 - L1ME LINE L1 -288 5833 5698 282 155 0 42 chr9 18655336 18655407 -123616037 + (TA)n Simple_repeat Simple_repeat 1 68 0 2429 258 58 60 chr9 18655964 18656423 -123615021 - L1MEc LINE L1 -5242 1154 695 2426 78 0 0 chr9 18656423 18656731 -123614713 - AluY SINE Alu -3 308 1 2429 258 58 60 chr9 18656731 18656835 -123614609 - L1MEc LINE L1 -5701 695 592 1968 110 10 17 chr9 18656835 18657134 -123614310 - AluSx SINE Alu -13 299 3 2429 258 58 60 chr9 18657134 18657683 -123613761 - L1MEc LINE L1 -5804 592 44 2236 233 94 0 chr9 18658303 18658836 -123612608 - MER119 DNA MER1_type 0 583 1 40066 70 3 0 chr9 18659289 18665396 -123606048 + L1PA5 LINE L1 30 6154 0 7508 186 44 11 chr9 18665725 18667656 -123603788 + L1 LINE L1 2322 4317 -1829 2521 160 44 2 chr9 18667666 18668116 -123603328 + L1P3 LINE L1 11 479 -5982 3786 81 1 116 chr9 18668116 18668805 -123602639 - LTR66 LTR ERVL 0 610 1 1491 68 16 2 chr9 18668805 18669165 -123602279 - HERVL66 LTR ERVL 0 4329 3881 1708 169 0 3 chr9 18669198 18669488 -123601956 - HERVL66 LTR ERVL -977 3352 3064 496 120 0 0 chr9 18669482 18669557 -123601887 - HERVL66 LTR ERVL -1603 2726 2652 * 2630 86 8 0 chr9 18669539 18669911 -123601533 - HERVL66 LTR ERVL -2532 1797 1423 535 84 0 0 chr9 18669899 18669970 -123601474 - HERVL66 LTR ERVL -3199 1130 1060 * 1161 98 95 116 chr9 18669982 18670267 -123601177 + LTR66 LTR ERVL 332 610 0 12557 142 21 45 chr9 18670415 18671690 -123599754 + L1P3 LINE L1 522 1826 -4635 2439 68 0 3 chr9 18671690 18672000 -123599444 + AluY SINE Alu 1 309 -2 12557 142 21 45 chr9 18672000 18673794 -123597650 + L1P3 LINE L1 1826 3546 -2915 468 0 0 0 chr9 18674486 18674538 -123596906 + (CA)n Simple_repeat Simple_repeat 2 53 0 924 152 81 30 chr9 18674663 18674861 -123596583 - MER2 DNA MER2_type -134 211 4 215 245 0 0 chr9 18674866 18674915 -123596529 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 812 256 156 22 chr9 18675533 18675904 -123595540 + MER39 LTR ERV1 262 682 -25 1036 217 38 0 chr9 18675928 18676163 -123595281 - L1M4 LINE L1 -509 5675 5432 1271 131 54 31 chr9 18676163 18676385 -123595059 - AluSg/x SINE Alu -8 304 78 3621 235 38 9 chr9 18676385 18677656 -123593788 - L1M4 LINE L1 -744 5440 4078 * 12672 186 48 15 chr9 18677652 18677980 -123593464 - L1 LINE L1 -757 6808 6492 2473 72 0 0 chr9 18677980 18678287 -123593157 - AluY SINE Alu -4 307 1 12672 186 48 15 chr9 18678287 18679434 -123592010 - L1 LINE L1 -1073 6492 5384 2159 118 7 10 chr9 18679434 18679740 -123591704 - AluSx SINE Alu -7 305 1 12672 186 48 15 chr9 18679740 18681336 -123590108 - L1 LINE L1 -2181 5384 3842 1912 170 0 19 chr9 18681336 18681647 -123589797 - AluJo SINE Alu -7 305 1 12672 186 48 15 chr9 18681647 18684860 -123586584 - L1 LINE L1 -3723 3842 4 447 201 12 104 chr9 18684865 18684949 -123586495 - L1M4 LINE L1 -2191 5374 5311 1499 209 29 10 chr9 18684949 18685255 -123586189 - AluJb SINE Alu 0 312 1 447 201 12 104 chr9 18685255 18685334 -123586110 - L1M4 LINE L1 -2254 5311 5226 315 233 0 11 chr9 18685347 18685437 -123586007 - L1M4 LINE L1 -2476 5089 5001 346 227 13 0 chr9 18685540 18685615 -123585829 - MIR SINE MIR -91 171 96 2129 119 60 5 chr9 18685615 18685985 -123585459 + L1MA3 LINE L1 5916 6305 0 64 35 0 0 chr9 18685985 18686070 -123585374 + AT_rich Low_complexity Low_complexity 1 85 0 181 206 0 0 chr9 18686301 18686335 -123585109 - MIR SINE MIR -64 144 111 2104 139 0 0 chr9 18686377 18686686 -123584758 + AluSx SINE Alu 1 309 -3 252 290 47 47 chr9 18686994 18687101 -123584343 + L2 LINE L2 3162 3268 -4 2266 121 23 3 chr9 18687593 18687941 -123583503 + THE1A LTR MaLR 1 355 0 11585 94 10 1 chr9 18687941 18689507 -123581937 + THE1A-int LTR MaLR 1 1580 0 2272 125 14 3 chr9 18689507 18689858 -123581586 + THE1A LTR MaLR 1 355 0 920 244 30 61 chr9 18690008 18690164 -123581280 + MIR SINE MIR 7 153 -109 2308 100 0 0 chr9 18690164 18690464 -123580980 + AluSg SINE Alu 1 300 -10 920 244 30 61 chr9 18690464 18690569 -123580875 + MIR SINE MIR 153 260 -2 2725 13 0 0 chr9 18691242 18691544 -123579900 - AluYa5 SINE Alu -9 302 1 5242 101 103 73 chr9 18691559 18693056 -123578388 + pTR5 LTR ERV1 743 2438 0 5212 244 60 19 chr9 18693059 18693085 -123578359 + L1M4 LINE L1 3063 3086 -3085 2479 68 0 0 chr9 18693085 18693379 -123578065 - AluY SINE Alu -17 294 1 5212 244 60 19 chr9 18693379 18695628 -123575816 + L1M4 LINE L1 3086 5428 -743 7957 227 83 19 chr9 18697054 18699219 -123572225 + L1MDa LINE L1 20 2457 -4083 297 0 0 0 chr9 18699219 18699252 -123572192 + (TATAA)n Simple_repeat Simple_repeat 5 37 0 7957 227 83 19 chr9 18699252 18700277 -123571167 + L1MDa LINE L1 2457 3415 -3125 592 347 39 26 chr9 18700570 18700878 -123570566 + L2 LINE L2 2343 2654 -660 488 139 9 35 chr9 18701020 18701135 -123570309 + CT-rich Low_complexity Low_complexity 3 114 0 1835 112 0 0 chr9 18701140 18701381 -123570063 - AluSc SINE Alu -68 241 1 207 328 0 0 chr9 18701887 18701948 -123569496 + CT-rich Low_complexity Low_complexity 2 62 0 32 0 0 0 chr9 18702124 18702156 -123569288 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr9 18702595 18702637 -123568807 + AT_rich Low_complexity Low_complexity 1 42 0 663 57 0 0 chr9 18703453 18703541 -123567903 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 23 0 0 0 chr9 18703667 18703690 -123567754 + AT_rich Low_complexity Low_complexity 1 23 0 442 369 100 17 chr9 18704103 18704575 -123566869 - L3 LINE CR1 -1 1576 1066 1605 158 14 3 chr9 18704871 18705155 -123566289 + L1PA16 LINE L1 5871 6157 -9 1214 184 139 32 chr9 18705642 18705952 -123565492 + MER2 DNA MER2_type 1 343 -1 297 279 132 20 chr9 18706551 18706952 -123564492 + L1M4 LINE L1 4140 4585 -1561 704 293 34 8 chr9 18707038 18707277 -123564167 - LTR33 LTR ERVL -243 278 34 270 311 128 16 chr9 18707295 18707607 -123563837 - L1M4 LINE L1 -1447 4699 4353 428 275 134 40 chr9 18707738 18708359 -123563085 - HAL1b LINE L1 -31 1317 639 238 279 0 0 chr9 18708404 18708465 -123562979 + MLT1I LTR MaLR 73 133 -276 2264 152 40 24 chr9 18708774 18709195 -123562249 + MSTC LTR MaLR 1 428 0 333 188 62 62 chr9 18710048 18710128 -123561316 - L2 LINE L2 -43 3270 3191 1063 141 6 34 chr9 18710303 18710324 -123561120 - AluSq SINE Alu -14 299 279 10381 118 5 8 chr9 18710324 18711003 -123560441 - L1PA10 LINE L1 -6 6477 5797 2258 105 3 0 chr9 18711003 18711299 -123560145 - AluSc SINE Alu -12 297 1 10381 118 5 8 chr9 18711299 18713055 -123558389 - L1PA10 LINE L1 -686 5797 4048 183 42 0 0 chr9 18713055 18713079 -123558365 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1063 141 6 34 chr9 18713079 18713233 -123558211 - AluSq SINE Alu -32 281 128 3943 162 33 4 chr9 18713233 18714043 -123557401 - L1PA10 LINE L1 -2409 4052 3219 624 159 0 0 chr9 18714044 18714157 -123557287 - L1PA2 LINE L1 -1 6154 6042 987 164 0 41 chr9 18714303 18714571 -123556873 - pTR5 LTR ERV1 -1439 999 743 1105 188 12 12 chr9 18714571 18714821 -123556623 - L1PA10 LINE L1 -5622 253 4 228 35 0 0 chr9 18715147 18715176 -123556268 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 378 0 0 0 chr9 18715175 18715217 -123556227 + (TG)n Simple_repeat Simple_repeat 2 43 0 1538 126 79 65 chr9 18715218 18715495 -123555949 - AluSx SINE Alu -31 281 1 1868 163 27 9 chr9 18716215 18716553 -123554891 - MER2 DNA MER2_type 0 344 1 2242 95 0 3 chr9 18718139 18718434 -123553010 + AluSc SINE Alu 1 294 -15 186 197 0 105 chr9 18718488 18718564 -123552880 - MIR SINE MIR -95 167 100 1408 291 223 41 chr9 18718998 18719239 -123552205 + L2 LINE L2 1986 2182 -1131 1230 136 38 34 chr9 18719239 18719474 -123551970 - MER46A DNA MER2_type 0 236 1 1408 291 223 41 chr9 18719474 18720103 -123551341 + L2 LINE L2 2182 3011 -302 235 259 17 0 chr9 18720967 18721025 -123550419 - L1ME4a LINE L1 -82 5973 5915 216 0 0 0 chr9 18721258 18721282 -123550162 + (CA)n Simple_repeat Simple_repeat 2 25 0 2021 125 7 7 chr9 18721351 18721648 -123549796 - AluSx SINE Alu -15 297 1 555 272 140 9 chr9 18722118 18722346 -123549098 - MIR SINE MIR 0 262 5 1004 199 93 72 chr9 18723774 18724106 -123547338 - MER2 DNA MER2_type 0 345 7 926 204 93 75 chr9 18725397 18725730 -123545714 - MER2 DNA MER2_type 0 345 7 2099 113 7 0 chr9 18726919 18727219 -123544225 - AluSp SINE Alu -11 302 1 1939 129 0 3 chr9 18728043 18728329 -123543115 - AluJb SINE Alu -17 295 11 24 0 0 0 chr9 18728478 18728502 -123542942 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr9 18728742 18728784 -123542660 + (CA)n Simple_repeat Simple_repeat 1 42 0 35 41 0 0 chr9 18729600 18729649 -123541795 + AT_rich Low_complexity Low_complexity 1 49 0 181 346 13 39 chr9 18729652 18729730 -123541714 + L2 LINE L2 3121 3196 -76 213 65 0 0 chr9 18729741 18729772 -123541672 + (CA)n Simple_repeat Simple_repeat 2 32 0 231 316 26 15 chr9 18730408 18730498 -123540946 + MIR SINE MIR 57 151 -93 1119 277 93 45 chr9 18731080 18731790 -123539654 - L1ME4a LINE L1 -246 5850 5084 2249 108 0 0 chr9 18731790 18732086 -123539358 - AluSq SINE Alu -17 296 1 1119 277 93 45 chr9 18732086 18732183 -123539261 - L1ME4a LINE L1 -1012 5084 4993 836 181 54 66 chr9 18732239 18732289 -123539155 + L1M4 LINE L1 4591 4640 -1506 2123 102 7 3 chr9 18732289 18732592 -123538852 + AluSc SINE Alu 1 304 -5 836 181 54 66 chr9 18732592 18732800 -123538644 + L1M4 LINE L1 4640 4846 -1300 447 206 61 8 chr9 18732798 18732929 -123538515 - L1ME4a LINE L1 -1391 4689 4552 * 2110 226 71 40 chr9 18732933 18733101 -123538343 - L1MEc LINE L1 -3205 2875 2714 332 22 22 0 chr9 18733101 18733146 -123538298 + (TA)n Simple_repeat Simple_repeat 1 46 0 2217 70 0 55 chr9 18733147 18733459 -123537985 - AluY SINE Alu -11 300 6 2110 226 71 40 chr9 18733459 18734191 -123537253 - L1MEc LINE L1 -3365 2715 1993 332 333 63 43 chr9 18734208 18734559 -123536885 - L1MEc LINE L1 -4817 1265 908 861 133 0 0 chr9 18734562 18734690 -123536754 - AluSx SINE Alu -16 296 169 637 117 0 0 chr9 18734701 18734795 -123536649 - AluSx SINE Alu -218 94 1 344 280 53 15 chr9 18734806 18734938 -123536506 - L1MEc LINE L1 -5055 1015 879 278 290 166 50 chr9 18734953 18735356 -123536088 - L1MEc LINE L1 -5307 763 314 559 352 28 4 chr9 18735381 18735631 -123535813 - L1MEc LINE L1 -5809 261 6 352 305 86 43 chr9 18735840 18736523 -123534921 - L1MEd LINE L1 -4613 1697 957 759 193 40 10 chr9 18736532 18736734 -123534710 - L1MCa LINE L1 -3450 2976 2769 1540 215 79 3 chr9 18736734 18737183 -123534261 - L1MCa LINE L1 -3505 2921 2440 519 165 0 0 chr9 18737185 18737264 -123534180 - Tigger5 DNA MER2_type -3 2320 2242 337 230 27 0 chr9 18737254 18737328 -123534116 + Tigger5 DNA MER2_type 2242 2317 -6 * 503 190 0 0 chr9 18737330 18737409 -123534035 - Tigger5 DNA MER2_type -2244 79 1 867 256 80 23 chr9 18737409 18737799 -123533645 - L1MCa LINE L1 -4009 2419 2008 332 340 9 0 chr9 18737799 18737905 -123533539 - L1MCa LINE L1 -4812 1614 1508 1321 273 90 65 chr9 18738192 18738777 -123532667 - L2 LINE L2 -8 3305 2694 2495 64 0 6 chr9 18738777 18739090 -123532354 - AluY SINE Alu 0 311 1 1321 273 90 65 chr9 18739090 18739402 -123532042 - L2 LINE L2 -619 2694 2391 375 73 0 0 chr9 18739586 18739641 -123531803 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 464 198 10 0 chr9 18740052 18740148 -123531296 - MER5A DNA MER1_type -83 106 10 731 276 43 14 chr9 18740289 18740499 -123530945 + MIR SINE MIR 5 220 -42 21 36 0 0 chr9 18741027 18741055 -123530389 + AT_rich Low_complexity Low_complexity 1 28 0 2006 124 0 0 chr9 18741253 18741563 -123529881 - AluSq SINE Alu 0 310 1 597 227 49 31 chr9 18741573 18741736 -123529708 - L1ME LINE L1 -439 5682 5517 23 0 0 0 chr9 18741753 18741776 -123529668 + AT_rich Low_complexity Low_complexity 1 23 0 353 280 72 16 chr9 18742122 18742247 -123529197 + L2 LINE L2 3136 3267 -5 941 81 188 7 chr9 18743049 18743198 -123528246 - AluY SINE Alu -135 176 1 2326 97 3 0 chr9 18743386 18743685 -123527759 + AluSq SINE Alu 1 300 -13 228 233 97 19 chr9 18743695 18743798 -123527646 - L1ME4a LINE L1 -25 6096 5986 683 270 130 36 chr9 18744048 18744440 -123527004 + Charlie8 DNA MER1_type 86 514 -1903 21 36 0 0 chr9 18744592 18744620 -123526824 + AT_rich Low_complexity Low_complexity 1 28 0 22 94 0 0 chr9 18744881 18744945 -123526499 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr9 18746836 18746857 -123524587 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 18748200 18748229 -123523215 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 18748610 18748631 -123522813 + AT_rich Low_complexity Low_complexity 1 21 0 2070 137 0 0 chr9 18749775 18750074 -123521370 - AluSx SINE Alu -13 299 1 1077 177 87 159 chr9 18750104 18750135 -123521309 - MLT2B1 LTR ERVL -11 509 477 243 0 0 0 chr9 18750135 18750162 -123521282 + (CA)n Simple_repeat Simple_repeat 2 28 0 1077 177 87 159 chr9 18750162 18750282 -123521162 - MLT2B1 LTR ERVL -43 477 350 2121 145 45 0 chr9 18750282 18750640 -123520804 + L1PA16 LINE L1 5793 6166 0 1077 177 87 159 chr9 18750640 18750876 -123520568 - MLT2B1 LTR ERVL -170 350 149 2171 109 0 0 chr9 18750951 18751235 -123520209 + AluSc SINE Alu 1 284 -25 1602 162 55 14 chr9 18751371 18751661 -123519783 + AluSx SINE Alu 2 303 -9 511 134 0 41 chr9 18752421 18752518 -123518926 - L1PA12 LINE L1 0 6168 6076 290 98 0 0 chr9 18752518 18752559 -123518885 - L1PA7 LINE L1 -97 6057 6017 * 2934 55 10 0 chr9 18752555 18753129 -123518315 - L1P3 LINE L1 -526 5628 5049 186 175 0 159 chr9 18753281 18753344 -123518100 + L2 LINE L2 3210 3262 -10 21 0 0 0 chr9 18753640 18753661 -123517783 + AT_rich Low_complexity Low_complexity 1 21 0 288 77 0 0 chr9 18753824 18753863 -123517581 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 1766 149 6 40 chr9 18753866 18754187 -123517257 - AluSx SINE Alu -2 310 1 28 29 0 0 chr9 18754187 18754222 -123517222 + AT_rich Low_complexity Low_complexity 1 35 0 1648 173 43 13 chr9 18755587 18755887 -123515557 + AluJo SINE Alu 2 310 -2 1384 177 36 61 chr9 18759369 18759730 -123511714 - L1MB8 LINE L1 -2 6176 5825 258 286 133 9 chr9 18760197 18760302 -123511142 - L2 LINE L2 0 3313 3196 1565 224 100 13 chr9 18760488 18760948 -123510496 - L1ME1 LINE L1 -44 6516 6017 379 213 0 0 chr9 18760947 18761027 -123510417 - L1ME1 LINE L1 -930 5610 5531 * 1821 191 66 66 chr9 18761097 18761719 -123509725 - L1ME1 LINE L1 -4005 2535 1914 1436 137 105 190 chr9 18761722 18762190 -123509254 - THE1C LTR MaLR 0 375 1 2484 220 78 27 chr9 18762193 18763016 -123508428 - L1ME1 LINE L1 -4628 1912 1048 1096 124 14 77 chr9 18763024 18763106 -123508338 - Tigger5 DNA MER2_type 0 2323 2237 2220 102 6 22 chr9 18763106 18763419 -123508025 + AluSx SINE Alu 5 312 0 1096 124 14 77 chr9 18763419 18763545 -123507899 - Tigger5 DNA MER2_type -86 2237 2128 2113 102 3 3 chr9 18763559 18763844 -123507600 - AluSc SINE Alu -24 285 1 13972 116 14 62 chr9 18763844 18765601 -123505843 - L1P4 LINE L1 -685 5798 4067 1017 143 7 0 chr9 18765601 18765779 -123505665 - AluSq SINE Alu 0 306 128 13972 116 14 62 chr9 18765779 18766590 -123504854 - L1P4 LINE L1 -2416 4067 3218 * 38220 31 17 1 chr9 18766588 18772619 -123498825 - L1PA2 LINE L1 0 6155 2 8644 214 26 37 chr9 18772621 18775525 -123495919 - L1P4 LINE L1 -3228 3233 248 1489 80 25 10 chr9 18775526 18775757 -123495687 - pTR5 LTR ERV1 -9 2429 172 355 221 0 0 chr9 18775764 18775850 -123495594 - LTR30 LTR ERV1 -98 624 539 2292 107 11 19 chr9 18775850 18776362 -123495082 - pTR5 LTR ERV1 -418 2020 1195 435 83 0 0 chr9 18779600 18779660 -123491784 + (TG)n Simple_repeat Simple_repeat 2 61 0 455 233 123 0 chr9 18779823 18779986 -123491458 + L1MB5 LINE L1 5097 5279 -867 971 124 0 28 chr9 18779988 18780133 -123491311 + AluSx SINE Alu 1 141 -172 3925 126 176 97 chr9 18780136 18781559 -123489885 - pTR5 LTR ERV1 0 2438 743 1091 127 0 18 chr9 18781559 18781725 -123489719 + AluSx SINE Alu 147 309 -3 1025 175 40 58 chr9 18781731 18782056 -123489388 + L1MB5 LINE L1 5289 5607 -567 823 172 0 0 chr9 18782057 18782191 -123489253 + AluJo SINE Alu 1 134 -178 2737 170 11 17 chr9 18782191 18782733 -123488711 + L1MB5 LINE L1 5594 6132 -42 252 0 0 0 chr9 18782895 18782923 -123488521 + (TA)n Simple_repeat Simple_repeat 2 29 0 1235 340 63 18 chr9 18783468 18784244 -123487200 - L2 LINE L2 -541 2773 1963 928 238 103 7 chr9 18784464 18784745 -123486699 + MLT1A1 LTR MaLR 41 348 -17 201 133 0 0 chr9 18785483 18785513 -123485931 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 21 95 0 0 chr9 18785574 18785637 -123485807 + AT_rich Low_complexity Low_complexity 1 63 0 1098 251 29 47 chr9 18786032 18786418 -123485026 + L1MDa LINE L1 3 381 -6159 2119 122 3 0 chr9 18786483 18786778 -123484666 + AluSx SINE Alu 1 296 -16 3301 122 198 102 chr9 18786878 18788142 -123483302 + pTR5 LTR ERV1 892 2438 0 384 262 0 33 chr9 18788145 18788267 -123483177 - AluSq/x SINE Alu -162 141 24 29 70 0 0 chr9 18788469 18788526 -123482918 + AT_rich Low_complexity Low_complexity 1 57 0 291 303 76 21 chr9 18789644 18789789 -123481655 - L2 LINE L2 -50 3263 3111 1163 195 39 3 chr9 18789974 18790256 -123481188 - L1MB4 LINE L1 -173 6007 5716 336 95 0 40 chr9 18790523 18790597 -123480847 + (TA)n Simple_repeat Simple_repeat 1 71 0 285 305 40 8 chr9 18791110 18791265 -123480179 + L1MC/D LINE L1 5671 5829 -326 314 279 25 25 chr9 18791394 18791516 -123479928 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 264 288 81 9 chr9 18791665 18791776 -123479668 + L1ME LINE L1 5628 5746 -424 843 226 6 146 chr9 18791850 18791997 -123479447 + L1M4 LINE L1 4979 5145 -1001 1736 189 7 3 chr9 18791997 18792283 -123479161 - AluJb SINE Alu -25 287 1 843 226 6 146 chr9 18792283 18792564 -123478880 + L1M4 LINE L1 5145 5334 -812 2275 74 6 58 chr9 18792564 18792889 -123478555 + AluY SINE Alu 1 308 -3 843 226 6 146 chr9 18792889 18792946 -123478498 + L1M4 LINE L1 5334 5397 -749 1549 206 27 44 chr9 18792956 18793172 -123478272 - L1MCa LINE L1 -3054 3372 3154 2606 132 31 19 chr9 18793172 18793649 -123477795 - MER31A LTR ERV1 -2 483 1 1549 206 27 44 chr9 18793649 18793995 -123477449 - L1MCa LINE L1 -3272 3154 2820 1790 31 0 14 chr9 18794023 18794246 -123477198 - L1PA4 LINE L1 -1 6154 5935 611 302 42 52 chr9 18794320 18794823 -123476621 - L1MEc LINE L1 -5792 604 107 200 189 0 0 chr9 18795295 18795332 -123476112 + (TG)n Simple_repeat Simple_repeat 2 38 0 5626 58 22 0 chr9 18795706 18796419 -123475025 - L1PA7 LINE L1 -3 6151 5423 214 177 0 48 chr9 18796464 18796526 -123474918 + T-rich Low_complexity Low_complexity 2 60 0 383 301 89 65 chr9 18796907 18797322 -123474122 - L1MCa LINE L1 -4857 1569 1145 248 198 70 0 chr9 18797324 18797410 -123474034 - L1MCa LINE L1 -5158 1271 1180 1960 149 131 13 chr9 18798043 18798426 -123473018 + MSTA LTR MaLR 1 428 0 1578 186 52 0 chr9 18798645 18798914 -123472530 + AluJb SINE Alu 4 286 -26 23 33 0 0 chr9 18798934 18798964 -123472480 + AT_rich Low_complexity Low_complexity 1 30 0 1428 207 0 57 chr9 18799094 18799408 -123472036 - AluJo SINE Alu -16 296 1 26 74 0 0 chr9 18799488 18799542 -123471902 + AT_rich Low_complexity Low_complexity 1 54 0 19302 165 32 22 chr9 18799903 18801981 -123469463 + L1MA3 LINE L1 24 2080 -5644 2105 139 27 27 chr9 18801981 18802356 -123469088 + THE1C LTR MaLR 1 375 0 19302 165 32 22 chr9 18802356 18802669 -123468775 + L1MA3 LINE L1 2080 2388 -5336 2153 126 3 0 chr9 18802669 18802970 -123468474 + AluSx SINE Alu 1 302 -10 19302 165 32 22 chr9 18802970 18807543 -123463901 + L1MA3 LINE L1 2388 7075 -649 1979 134 10 10 chr9 18807543 18807841 -123463603 + AluSx SINE Alu 1 298 -14 19302 165 32 22 chr9 18807841 18808487 -123462957 + L1MA3 LINE L1 7075 7713 -11 238 237 34 34 chr9 18808680 18808739 -123462705 - L3 LINE CR1 -2 1575 1517 406 316 89 32 chr9 18809290 18809399 -123462045 - HAL1b LINE L1 -33 1315 1214 2461 63 0 16 chr9 18809399 18809715 -123461729 - AluY SINE Alu 0 311 1 406 316 89 32 chr9 18809715 18809918 -123461526 - HAL1b LINE L1 -134 1214 985 588 274 70 93 chr9 18809939 18810233 -123461211 - HAL1b LINE L1 -456 892 593 1874 114 16 70 chr9 18810233 18810548 -123460896 + AluSx SINE Alu 6 303 -9 588 274 70 93 chr9 18810548 18811082 -123460362 - HAL1b LINE L1 -755 593 83 2144 128 0 3 chr9 18811145 18811443 -123460001 - AluSc SINE Alu -12 297 1 974 231 33 17 chr9 18811808 18812107 -123459337 - L1MEc LINE L1 -4600 1796 1493 1465 262 31 49 chr9 18812130 18812642 -123458802 - L1MEc LINE L1 -5834 562 60 191 284 52 84 chr9 18812683 18812838 -123458606 + L2 LINE L2 2252 2401 -913 2641 209 46 48 chr9 18812935 18813624 -123457820 - MER76 LTR ERV 0 688 1 267 244 24 37 chr9 18813906 18813988 -123457456 - MLT1H LTR MaLR -330 219 139 294 219 14 0 chr9 18814614 18814687 -123456757 - MLT1I LTR MaLR -20 389 316 256 296 111 40 chr9 18814774 18814973 -123456471 - MLT1I LTR MaLR -123 286 74 283 222 40 10 chr9 18816063 18816162 -123455282 + (TA)n Simple_repeat Simple_repeat 2 103 0 1519 178 59 0 chr9 18816217 18816487 -123454957 + AluJb SINE Alu 6 291 -21 31 0 0 0 chr9 18816491 18816522 -123454922 + AT_rich Low_complexity Low_complexity 1 31 0 2410 71 0 3 chr9 18816608 18816902 -123454542 - AluY SINE Alu -18 293 1 2046 256 59 70 chr9 18817759 18818561 -123452883 - MER21B LTR ERV1 -51 812 20 1631 126 78 3 chr9 18818561 18818854 -123452590 - MER2 DNA MER2_type 0 345 31 28 79 0 0 chr9 18821798 18821861 -123449583 + AT_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr9 18822020 18822043 -123449401 + AT_rich Low_complexity Low_complexity 1 23 0 2532 128 0 20 chr9 18822746 18823144 -123448300 + MLT1B LTR MaLR 1 390 0 2079 123 3 16 chr9 18823200 18823508 -123447936 - AluSx SINE Alu -8 304 1 21 0 0 0 chr9 18823787 18823808 -123447636 + AT_rich Low_complexity Low_complexity 1 21 0 2106 177 100 26 chr9 18823890 18824504 -123446940 - MER39 LTR ERV1 0 707 2 21 89 0 0 chr9 18824591 18824647 -123446797 + AT_rich Low_complexity Low_complexity 1 56 0 183 184 0 0 chr9 18824733 18824771 -123446673 + (TAA)n Simple_repeat Simple_repeat 2 39 0 388 248 141 34 chr9 18824812 18824961 -123446483 - MIR SINE MIR -72 190 26 1050 211 15 0 chr9 18825032 18825236 -123446208 + AluJo SINE Alu 83 289 -23 1588 180 68 3 chr9 18825941 18826280 -123445164 - MLT1A1 LTR MaLR 0 365 5 4212 78 2 0 chr9 18828774 18829327 -123442117 + MER41A LTR ERV1 1 554 0 801 229 6 0 chr9 18829593 18829768 -123441676 + MER5B DNA MER1_type 3 178 0 3835 101 4 7 chr9 18830146 18830702 -123440742 - MER41A LTR ERV1 0 554 1 22 35 0 0 chr9 18830991 18831020 -123440424 + AT_rich Low_complexity Low_complexity 1 29 0 615 183 86 34 chr9 18831195 18831370 -123440074 - LTR45B LTR ERV1 0 489 306 2188 168 73 58 chr9 18831745 18832292 -123439152 + MER34B LTR ERV1 11 565 0 1021 236 101 42 chr9 18832628 18833087 -123438357 + MER34 LTR ERV1 1 707 0 2150 110 0 3 chr9 18833101 18833401 -123438043 - AluSg SINE Alu -11 299 1 785 295 70 4 chr9 18833419 18833663 -123437781 + MIR SINE MIR 3 262 0 1480 203 7 14 chr9 18834341 18834637 -123436807 - AluJo SINE Alu -18 294 1 244 281 55 0 chr9 18834806 18834952 -123436492 + L1M4 LINE L1 5175 5328 -818 982 262 70 61 chr9 18835501 18835928 -123435516 + MLT2B1 LTR ERVL 90 520 0 754 288 81 100 chr9 18836019 18836638 -123434806 + ERVL LTR ERVL 3913 4519 -1245 2030 148 0 0 chr9 18836743 18837040 -123434404 - AluSx SINE Alu -15 297 1 602 344 56 5 chr9 18837051 18837541 -123433903 + ERVL LTR ERVL 4536 5074 -690 674 291 184 14 chr9 18837588 18837703 -123433741 + L2 LINE L2 1730 1824 -1490 2187 114 0 0 chr9 18837703 18838002 -123433442 - AluSx SINE Alu -13 299 1 674 291 184 14 chr9 18838002 18838244 -123433200 + L2 LINE L2 1824 2148 -1166 1858 161 60 52 chr9 18838246 18838631 -123432813 - MSTD LTR MaLR 0 396 9 221 313 27 36 chr9 18838632 18838744 -123432700 + L2 LINE L2 2165 2275 -1039 1288 113 72 0 chr9 18838758 18838953 -123432491 - AluSp SINE Alu -18 295 87 962 308 90 13 chr9 18838953 18839330 -123432114 + L2 LINE L2 2266 2671 -643 464 326 114 48 chr9 18839298 18839755 -123431689 + L2 LINE L2 2827 3313 0 * 292 368 124 27 chr9 18840061 18840360 -123431084 + L3 LINE CR1 64 391 -1186 471 314 150 55 chr9 18840388 18840808 -123430636 + L3 LINE CR1 676 1165 -412 2422 74 0 10 chr9 18840808 18841117 -123430327 + AluSx SINE Alu 1 306 -6 471 314 150 55 chr9 18841117 18841262 -123430182 + L3 LINE CR1 1165 1295 -282 422 246 67 101 chr9 18841268 18841484 -123429960 + L2 LINE L2 3055 3262 -51 2355 88 0 0 chr9 18841484 18841779 -123429665 + AluY SINE Alu 1 295 -16 422 246 67 101 chr9 18841779 18841830 -123429614 + L2 LINE L2 3262 3313 0 365 354 107 43 chr9 18841804 18842084 -123429360 + L3 LINE CR1 1279 1576 -1 * 772 298 94 20 chr9 18843156 18844030 -123427414 - L1ME LINE L1 -652 5518 4578 3688 230 73 47 chr9 18844031 18844480 -123426964 + L1MD2 LINE L1 95 531 -6009 1868 162 6 49 chr9 18844480 18844826 -123426618 + MER1B DNA MER1_type 3 333 -4 3688 230 73 47 chr9 18844826 18845394 -123426050 + L1MD2 LINE L1 531 1152 -5388 2031 133 35 41 chr9 18845394 18845762 -123425682 + MER47A DNA MER2_type 1 366 0 3688 230 73 47 chr9 18845762 18845957 -123425487 + L1MD2 LINE L1 1152 1340 -5200 228 220 20 0 chr9 18845993 18846043 -123425401 - LTR52 LTR ERVL -40 381 331 2270 217 77 10 chr9 18846056 18847023 -123424421 + L1MD2 LINE L1 5201 6236 -517 263 286 106 19 chr9 18847501 18847662 -123423782 + MARNA DNA Mariner 386 560 -26 1854 162 14 0 chr9 18847772 18848068 -123423376 + AluSx SINE Alu 1 300 -12 500 140 10 30 chr9 18848532 18848632 -123422812 - FLAM_C SINE Alu -9 134 37 205 130 0 56 chr9 18850235 18850289 -123421155 + (TTTTC)n Simple_repeat Simple_repeat 5 55 0 21 36 0 0 chr9 18851595 18851623 -123419821 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 18852464 18852487 -123418957 + AT_rich Low_complexity Low_complexity 1 23 0 1817 133 0 0 chr9 18852881 18853145 -123418299 - AluSx SINE Alu -14 298 35 9293 195 95 11 chr9 18853146 18857072 -123414372 - L1 LINE L1 -2611 4954 13 973 218 148 45 chr9 18857584 18857942 -123413502 + MSTD LTR MaLR 1 395 -1 1244 233 53 28 chr9 18858142 18858503 -123412941 + MLT1A2 LTR MaLR 1 370 -4 1748 207 115 28 chr9 18858505 18859076 -123412368 + MLT1A2-int LTR MaLR 1 738 -633 350 255 43 0 chr9 18859192 18859286 -123412158 + MLT1A2-int LTR MaLR 686 783 -952 229 185 37 0 chr9 18859483 18859537 -123411907 + (TA)n Simple_repeat Simple_repeat 1 56 0 393 278 70 70 chr9 18859837 18860064 -123411380 - L1MEd LINE L1 -5555 564 338 248 227 136 0 chr9 18860271 18860359 -123411085 - L1MEd LINE L1 -6004 115 16 466 333 90 27 chr9 18860823 18861123 -123410321 - L2 LINE L2 0 3313 2995 575 208 32 8 chr9 18861278 18861403 -123410041 - MIR SINE MIR -3 259 132 214 381 92 12 chr9 18861565 18861738 -123409706 - MIR SINE MIR -70 192 6 36 23 0 0 chr9 18861868 18861911 -123409533 + AT_rich Low_complexity Low_complexity 1 43 0 286 333 50 21 chr9 18862590 18862731 -123408713 - MIR SINE MIR -109 153 9 29 28 0 0 chr9 18862795 18862831 -123408613 + AT_rich Low_complexity Low_complexity 1 36 0 5804 153 22 8 chr9 18863381 18864677 -123406767 - L1MA4 LINE L1 -9 6291 4982 250 223 106 98 chr9 18865282 18865547 -123405897 + L1MEd LINE L1 895 1161 -4958 299 276 41 24 chr9 18865561 18865684 -123405760 + HAL1 LINE L1 1483 1607 -900 2270 108 0 3 chr9 18865702 18866008 -123405436 + AluSx SINE Alu 1 305 -7 2375 77 0 3 chr9 18866252 18866551 -123404893 - AluSx SINE Alu -14 298 1 622 151 0 0 chr9 18866582 18866688 -123404756 - AluJo SINE Alu -2 310 205 * 792 214 13 19 chr9 18866686 18866845 -123404599 - AluJo SINE Alu -154 158 1 385 283 35 17 chr9 18866847 18867020 -123404424 - L1MDa LINE L1 -2185 4355 4180 * 1597 246 75 11 chr9 18867013 18867675 -123403769 - L1MDa LINE L1 -2792 3748 3044 616 204 125 79 chr9 18867750 18867966 -123403478 - L1MDa LINE L1 -4618 1922 1697 2133 119 0 7 chr9 18868523 18868825 -123402619 - AluSq SINE Alu -13 300 1 232 266 16 0 chr9 18870759 18870823 -123400621 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 689 271 6 12 chr9 18871018 18871188 -123400256 + MER5B DNA MER1_type 3 171 -7 310 305 80 53 chr9 18871443 18871594 -123399850 + L1MEd LINE L1 300 454 -5962 1273 241 75 0 chr9 18871635 18871955 -123399489 - L2 LINE L2 -1001 2313 1970 183 198 9 135 chr9 18871991 18872102 -123399342 - L2 LINE L2 -1466 1848 1752 2781 231 53 22 chr9 18872271 18872624 -123398820 + L1MB8 LINE L1 2731 3072 -3106 1137 221 145 15 chr9 18872624 18872955 -123398489 + MLT1A2 LTR MaLR 1 374 0 2781 231 53 22 chr9 18872955 18873254 -123398190 + L1MB8 LINE L1 3072 3360 -2818 2246 67 0 51 chr9 18873254 18873570 -123397874 + AluY SINE Alu 1 300 -11 2781 231 53 22 chr9 18873570 18874006 -123397438 + L1MB8 LINE L1 3360 6112 -66 2744 244 72 21 chr9 18873977 18875365 -123396079 + L1MEd LINE L1 1623 3155 -3271 * 2101 122 3 3 chr9 18875365 18875660 -123395784 - AluSx SINE Alu -17 295 1 2744 244 72 21 chr9 18875660 18875801 -123395643 + L1MEd LINE L1 3155 3287 -3139 415 79 79 0 chr9 18875801 18875864 -123395580 + L1MB1 LINE L1 6101 6168 0 761 277 52 84 chr9 18875868 18876366 -123395078 + L1MEd LINE L1 4194 4675 -1751 203 313 44 50 chr9 18876787 18876969 -123394475 - L2 LINE L2 -1217 2097 1917 255 227 15 0 chr9 18876981 18877047 -123394397 - MLT1K LTR MaLR 0 588 522 581 277 103 30 chr9 18877286 18877557 -123393887 - MER20B DNA MER1_type -492 291 1 8076 56 1 0 chr9 18878322 18879287 -123392157 + LTR5 LTR ERVK 1 966 -3 1476 49 0 0 chr9 18882183 18882368 -123389076 - L1PA3 LINE L1 -102 6053 5869 877 37 0 0 chr9 18882368 18882471 -123388973 + L1PA2 LINE L1 6049 6155 0 1831 164 0 3 chr9 18885992 18886284 -123385160 + AluJo SINE Alu 1 291 -21 1495 234 141 34 chr9 18886487 18887076 -123384368 - MLT1E1 LTR MaLR -2 652 1 24 0 0 0 chr9 18887176 18887200 -123384244 + AT_rich Low_complexity Low_complexity 1 24 0 279 291 191 18 chr9 18887622 18887818 -123383626 - MIR SINE MIR -18 244 19 280 364 143 0 chr9 18888818 18889049 -123382395 - L2 LINE L2 -497 2817 2554 35 54 0 0 chr9 18890409 18890465 -123380979 + AT_rich Low_complexity Low_complexity 1 56 0 2170 155 10 30 chr9 18892508 18892901 -123378543 - MLT1B LTR MaLR -5 385 1 666 230 15 7 chr9 18893092 18893227 -123378217 - MIR SINE MIR -123 139 4 181 313 20 81 chr9 18893391 18893490 -123377954 + MIR SINE MIR 25 117 -91 221 175 25 50 chr9 18894051 18894131 -123377313 + (TATAA)n Simple_repeat Simple_repeat 1 78 0 205 388 68 19 chr9 18894693 18894893 -123376551 - MIR SINE MIR -57 205 2 673 248 140 84 chr9 18895017 18895468 -123375976 - MLT1H LTR MaLR -2 547 72 26 30 0 0 chr9 18895714 18895747 -123375697 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr9 18895826 18895854 -123375590 + AT_rich Low_complexity Low_complexity 1 28 0 526 263 25 38 chr9 18896702 18896862 -123374582 + MIR SINE MIR 104 261 -1 198 103 0 0 chr9 18896874 18896903 -123374541 + (CAG)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr9 18897188 18897230 -123374214 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr9 18898461 18898506 -123372938 + AT_rich Low_complexity Low_complexity 1 45 0 4141 122 5 0 chr9 18900717 18901341 -123370103 + L1PA15 LINE L1 5527 6153 -12 384 254 85 25 chr9 18902030 18902148 -123369296 + MER5A DNA MER1_type 64 188 -1 501 255 85 7 chr9 18902767 18902920 -123368524 + MIR SINE MIR 60 224 -38 183 80 0 0 chr9 18902951 18902976 -123368468 + (TAG)n Simple_repeat Simple_repeat 2 26 0 229 175 0 0 chr9 18904501 18904541 -123366903 - MIR SINE MIR -10 252 213 313 258 60 60 chr9 18905334 18905485 -123365959 + L2 LINE L2 628 778 -2536 492 269 54 24 chr9 18905492 18905659 -123365785 + MER20B DNA MER1_type 4 175 -608 4617 292 78 36 chr9 18905699 18907528 -123363916 + L2 LINE L2 800 2746 -567 2286 97 3 0 chr9 18907528 18907827 -123363617 + AluSx SINE Alu 4 303 -9 4617 292 78 36 chr9 18907827 18908125 -123363319 + L2 LINE L2 2746 3030 -283 30 27 0 0 chr9 18908308 18908345 -123363099 + AT_rich Low_complexity Low_complexity 1 37 0 259 313 0 0 chr9 18908432 18908529 -123362915 + polypurine Low_complexity Low_complexity 1 97 0 2373 83 0 3 chr9 18908529 18908831 -123362613 + AluY SINE Alu 1 301 -10 1175 199 65 98 chr9 18908845 18908857 -123362587 - L1 LINE L1 -868 5278 5267 14619 127 31 14 chr9 18908857 18911236 -123360208 + Tigger1 DNA MER2_type 1 2418 0 1175 199 65 98 chr9 18911236 18911462 -123359982 - L1 LINE L1 -879 5267 5035 352 139 25 25 chr9 18911462 18911541 -123359903 - FLAM_A SINE Alu 0 133 55 1175 199 65 98 chr9 18911541 18911834 -123359610 - L1 LINE L1 -1111 5035 4725 * 4359 168 47 2 chr9 18911821 18912638 -123358806 + L1MB1 LINE L1 5315 6167 -1 349 286 133 0 chr9 18912862 18912967 -123358477 - MER63A DNA MER1_type -3 207 89 846 233 0 6 chr9 18912971 18913143 -123358301 + AluJo SINE Alu 127 297 -15 336 375 77 14 chr9 18913500 18913785 -123357659 + L1M4 LINE L1 2683 2985 -3161 1950 265 19 15 chr9 18914621 18915157 -123356287 + L1MB7 LINE L1 858 1395 -4886 445 271 95 49 chr9 18915301 18915752 -123355692 + L1MB7 LINE L1 4603 5074 -1276 409 294 69 28 chr9 18915902 18916120 -123355324 + L1MB7 LINE L1 5287 5513 -837 682 296 122 39 chr9 18916152 18916487 -123354957 + L1MB7 LINE L1 5591 5953 -2059 279 369 48 0 chr9 18916488 18916591 -123354853 + MER91A DNA MER1_type 79 186 -10 21 0 0 0 chr9 18917419 18917440 -123354004 + AT_rich Low_complexity Low_complexity 1 21 0 200 158 26 0 chr9 18918148 18918186 -123353258 + L2 LINE L2 3269 3307 -6 211 316 18 0 chr9 18919187 18919244 -123352200 + L2 LINE L2 3244 3301 -12 234 345 95 0 chr9 18921233 18921349 -123350095 + L2 LINE L2 3140 3266 -6 21 0 0 0 chr9 18922493 18922514 -123348930 + AT_rich Low_complexity Low_complexity 1 21 0 1098 189 58 22 chr9 18923394 18923684 -123347760 + L1MB7 LINE L1 6075 6379 -9 452 314 6 34 chr9 18924154 18924329 -123347115 - L2 LINE L2 -6 3307 3138 26 0 0 0 chr9 18925136 18925162 -123346282 + AT_rich Low_complexity Low_complexity 1 26 0 201 132 0 0 chr9 18925197 18925235 -123346209 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 208 311 155 10 chr9 18925404 18925507 -123345937 - L2 LINE L2 -4 3309 3192 3197 175 34 6 chr9 18925513 18926158 -123345286 + L1MB3 LINE L1 5485 6147 -36 27 0 0 0 chr9 18927106 18927133 -123344311 + AT_rich Low_complexity Low_complexity 1 27 0 5633 170 61 57 chr9 18927207 18927293 -123344151 + Tigger3b DNA MER2_type 1 85 -2943 1983 92 3 20 chr9 18927293 18927598 -123343846 - L1PA13 LINE L1 0 6163 5864 5633 170 61 57 chr9 18927598 18927808 -123343636 + Tigger3b DNA MER2_type 85 293 -2735 1798 183 10 3 chr9 18927808 18928109 -123343335 - AluJb SINE Alu -9 303 1 5633 170 61 57 chr9 18928109 18929037 -123342407 + Tigger3b DNA MER2_type 293 1231 0 1336 201 84 26 chr9 18929218 18929561 -123341883 - MLT1A1 LTR MaLR -2 363 1 192 403 89 8 chr9 18930393 18930517 -123340927 + L3b LINE CR1 1374 1507 -76 23 33 0 0 chr9 18932905 18932935 -123338509 + AT_rich Low_complexity Low_complexity 1 30 0 397 289 198 17 chr9 18936346 18936695 -123334749 + L2 LINE L2 2807 3218 -95 2836 198 69 19 chr9 18936695 18937373 -123334071 + Cheshire DNA MER1_type 1 712 -1708 2138 205 36 26 chr9 18937426 18937924 -123333520 + MLT1D LTR MaLR 1 503 -2 268 211 0 0 chr9 18937925 18937982 -123333462 - L1M4 LINE L1 -2389 3757 3701 2964 247 95 24 chr9 18938006 18939365 -123332079 + L1M4 LINE L1 3844 5298 -848 767 161 39 0 chr9 18939809 18939964 -123331480 - L1MA6 LINE L1 -4 6296 6136 2837 192 9 4 chr9 18939966 18940518 -123330926 - L1PA16 LINE L1 -16 6150 5596 1783 240 64 30 chr9 18941200 18941792 -123329652 - L1MD2 LINE L1 -2 6357 5746 8821 144 16 21 chr9 18941811 18943341 -123328103 + ERVL LTR ERVL 3905 5426 -338 1884 188 53 5 chr9 18943370 18943763 -123327681 + MLT2D LTR ERVL 3 414 0 1194 241 21 10 chr9 18943763 18944054 -123327390 - L1MD2 LINE L1 -626 5733 5440 676 214 204 67 chr9 18944291 18944590 -123326854 - MLT1E LTR MaLR -8 585 246 342 98 0 0 chr9 18944614 18944665 -123326779 + (CA)n Simple_repeat Simple_repeat 1 51 0 324 267 0 0 chr9 18944667 18944742 -123326702 - MLT1E LTR MaLR -467 75 1 1466 156 103 6 chr9 18945302 18945622 -123325822 + L1PA16 LINE L1 5811 6161 -5 2239 76 20 10 chr9 18945777 18946078 -123325366 - AluY SINE Alu -7 304 1 473 292 129 45 chr9 18946153 18946380 -123325064 + L1M4 LINE L1 2866 3072 -3074 1854 160 0 25 chr9 18946380 18946699 -123324745 + AluJb SINE Alu 2 312 0 473 292 129 45 chr9 18946699 18946875 -123324569 + L1M4 LINE L1 3072 3303 -2843 459 333 78 48 chr9 18946918 18946991 -123324453 + L1M4 LINE L1 3382 3451 -2695 1776 183 0 7 chr9 18946991 18947291 -123324153 + AluJo SINE Alu 1 298 -14 459 333 78 48 chr9 18947291 18947638 -123323806 + L1M4 LINE L1 3451 3815 -2331 307 308 34 8 chr9 18947881 18947998 -123323446 + MLT1J LTR MaLR 305 424 -87 2784 286 89 7 chr9 18948060 18949206 -123322238 + L2 LINE L2 1896 3129 -184 1621 224 43 18 chr9 18949271 18949708 -123321736 - MER39 LTR ERV1 0 707 260 305 160 26 24 chr9 18949696 18949785 -123321659 - MER39 LTR ERV1 -557 87 1 * 387 235 0 59 chr9 18949804 18949906 -123321538 + L2 LINE L2 3218 3313 0 1160 220 33 84 chr9 18950001 18950075 -123321369 + MLT1C LTR MaLR 6 82 -385 2369 64 6 19 chr9 18950075 18950389 -123321055 + AluY SINE Alu 1 310 -1 1160 220 33 84 chr9 18950389 18950801 -123320643 + MLT1C LTR MaLR 82 467 0 763 133 21 183 chr9 18950886 18950996 -123320448 - MER106A DNA MER1_type -2 234 194 2330 104 0 19 chr9 18950996 18951312 -123320132 - AluSg SINE Alu 0 310 1 763 133 21 183 chr9 18951312 18951480 -123319964 - MER106A DNA MER1_type -42 194 1 734 252 67 52 chr9 18951568 18951897 -123319547 + MLT1I LTR MaLR 28 361 -48 1456 158 91 8 chr9 18951906 18952051 -123319393 - AluJb SINE Alu -25 287 155 198 0 0 0 chr9 18952051 18952073 -123319371 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1456 158 91 8 chr9 18952073 18952192 -123319252 - AluJb SINE Alu -157 155 1 348 259 29 41 chr9 18953221 18953391 -123318053 - MLT2E LTR ERVL -14 614 447 384 77 0 0 chr9 18954209 18954261 -123317183 + (GA)n Simple_repeat Simple_repeat 2 53 0 416 250 79 29 chr9 18955063 18955203 -123316241 + MIR SINE MIR 110 256 -6 241 301 159 0 chr9 18955308 18955421 -123316023 - MIR SINE MIR -130 132 2 2078 119 3 3 chr9 18956208 18956502 -123314942 - AluSx SINE Alu -18 294 1 230 204 0 0 chr9 18957082 18957126 -123314318 - MLT2B1 LTR ERVL -4 410 367 1039 231 61 48 chr9 18957183 18957582 -123313862 - MLT2B1 LTR ERVL -58 406 1 917 183 122 5 chr9 18957814 18958027 -123313417 + MER90 LTR ERV1 3 240 -374 340 182 0 15 chr9 18958117 18958183 -123313261 + MER90 LTR ERV1 233 297 -317 2573 68 0 0 chr9 18958891 18959200 -123312244 - AluY SINE Alu -2 309 1 283 93 0 0 chr9 18959816 18959859 -123311585 - Alu SINE Alu -10 290 248 2040 114 7 17 chr9 18959859 18960148 -123311296 - AluSx SINE Alu -26 286 1 4350 175 31 48 chr9 18960393 18961632 -123309812 + L1MC3 LINE L1 6336 7655 -130 466 207 300 0 chr9 18961647 18961797 -123309647 + MER90 LTR ERV1 405 599 -15 2410 84 0 54 chr9 18962366 18962736 -123308708 - L1PA8 LINE L1 0 6172 5823 482 229 207 43 chr9 18963030 18963218 -123308226 + MIR SINE MIR 2 220 -42 208 343 38 48 chr9 18963363 18963468 -123307976 + MIR SINE MIR 34 137 -71 2141 108 0 7 chr9 18963741 18964037 -123307407 - AluSg SINE Alu -16 294 1 27 62 0 0 chr9 18964842 18964890 -123306554 + AT_rich Low_complexity Low_complexity 1 48 0 1633 113 4 4 chr9 18965140 18965371 -123306073 - AluSg/x SINE Alu -1 309 79 613 306 44 6 chr9 18966036 18966216 -123305228 - MIR SINE MIR -68 194 8 189 0 0 0 chr9 18966446 18966467 -123304977 + (A)n Simple_repeat Simple_repeat 1 21 0 370 312 196 0 chr9 18966885 18967074 -123304370 - MIR SINE MIR -28 234 9 338 347 42 19 chr9 18967726 18967885 -123303559 + MIR SINE MIR 16 174 -73 253 316 61 9 chr9 18968009 18968123 -123303321 + L2 LINE L2 3153 3272 0 2808 160 12 60 chr9 18968858 18969503 -123301941 - L1MB8 LINE L1 -11 6167 5554 237 375 55 0 chr9 18970475 18970603 -123300841 - MIR3 SINE MIR -71 137 3 299 372 67 6 chr9 18970770 18970950 -123300494 - MER91A DNA MER1_type -3 193 3 229 209 0 0 chr9 18971130 18971173 -123300271 + (CA)n Simple_repeat Simple_repeat 1 43 0 442 250 64 76 chr9 18971338 18971510 -123299934 - MER5B DNA MER1_type -1 177 8 1581 163 101 91 chr9 18971734 18971954 -123299490 - MLT1B LTR MaLR 0 390 163 2020 156 7 0 chr9 18971954 18972262 -123299182 - AluSx SINE Alu -2 310 1 1581 163 101 91 chr9 18972262 18972427 -123299017 - MLT1B LTR MaLR -227 163 1 43521 35 23 1 chr9 18972527 18978546 -123292898 + L1PA3 LINE L1 3 6153 -2 694 220 19 125 chr9 18979088 18979276 -123292168 + MIR SINE MIR 27 181 -81 14106 124 13 6 chr9 18979276 18982107 -123289337 + L1PA10 LINE L1 3322 6157 -11 694 220 19 125 chr9 18982107 18982182 -123289262 + MIR SINE MIR 181 262 0 321 252 187 19 chr9 18982613 18982720 -123288724 - L2 LINE L2 -2 3270 3146 1975 194 19 6 chr9 18983023 18983383 -123288061 - MLT1A1 LTR MaLR 0 365 1 2337 147 124 15 chr9 18983455 18983857 -123287587 + MLT2B2 LTR ERVL 1 446 -69 237 196 0 0 chr9 18983866 18983917 -123287527 + (TG)n Simple_repeat Simple_repeat 1 51 0 465 303 40 58 chr9 18983994 18984271 -123287173 + L2 LINE L2 1662 1933 -1381 2150 242 123 26 chr9 18984275 18984853 -123286591 - L1ME3A LINE L1 0 6170 5495 2540 62 0 3 chr9 18984853 18985162 -123286282 + AluY SINE Alu 1 308 -3 2150 242 123 26 chr9 18985162 18985363 -123286081 - L1ME3A LINE L1 -675 5495 5315 610 126 44 44 chr9 18985355 18985490 -123285954 - L1MA10 LINE L1 -2 6332 6198 * 991 185 18 44 chr9 18985479 18985706 -123285738 - L1MA10 LINE L1 -88 6246 6026 1495 273 70 35 chr9 18985847 18986729 -123284715 - L1ME3A LINE L1 -1621 4525 3613 980 183 0 6 chr9 18986756 18986925 -123284519 - AluJb SINE Alu -14 298 131 701 149 13 18 chr9 18986928 18987150 -123284294 + CT-rich Low_complexity Low_complexity 1 220 0 795 153 0 8 chr9 18987150 18987443 -123284001 - FLAM_C SINE Alu 0 292 1 21 0 0 0 chr9 18987448 18987469 -123283975 + AT_rich Low_complexity Low_complexity 1 21 0 266 322 91 0 chr9 18987471 18987592 -123283852 - L1ME3A LINE L1 -2560 3586 3455 242 313 61 0 chr9 18987623 18987722 -123283722 - L2 LINE L2 -588 2726 2622 189 213 0 98 chr9 18988214 18988275 -123283169 + L3b LINE CR1 1276 1330 -253 270 81 0 0 chr9 18989302 18989339 -123282105 + (A)n Simple_repeat Simple_repeat 1 37 0 366 344 27 6 chr9 18989352 18989535 -123281909 - MER5A DNA MER1_type -2 187 1 458 239 42 7 chr9 18989956 18990098 -123281346 + Charlie8 DNA MER1_type 83 229 -2188 540 182 27 9 chr9 18990169 18990279 -123281165 + MER69A DNA AcHobo 66 177 0 255 228 0 0 chr9 18990407 18990464 -123280980 + Charlie8 DNA MER1_type 404 460 -1957 21 0 0 0 chr9 18991650 18991671 -123279773 + AT_rich Low_complexity Low_complexity 1 21 0 1262 246 116 37 chr9 18991772 18992421 -123279023 + L1M4 LINE L1 3660 4359 -1787 820 283 79 46 chr9 18992424 18993088 -123278356 + L1ME LINE L1 1407 2137 -4444 302 326 58 22 chr9 18993131 18993579 -123277865 + L1ME LINE L1 2259 2722 -3999 1839 248 63 94 chr9 18993594 18994344 -123277100 + L1ME LINE L1 3093 3891 -2649 548 163 0 0 chr9 18994344 18994430 -123277014 + AluSg/x SINE Alu 218 303 -7 1839 248 63 94 chr9 18994430 18994635 -123276809 + L1ME LINE L1 3891 4101 -2439 1246 197 7 30 chr9 18994654 18994923 -123276521 - AluJo SINE Alu -21 291 29 1453 270 38 44 chr9 18994961 18995549 -123275895 + L1ME LINE L1 5592 6171 -393 2569 46 0 3 chr9 18995619 18995923 -123275521 + AluY SINE Alu 1 303 -8 373 272 25 62 chr9 18996286 18996448 -123274996 + MIR SINE MIR 52 207 -55 1672 177 15 103 chr9 18996515 18996911 -123274533 + MLT1A1 LTR MaLR 5 365 0 755 299 69 14 chr9 18998167 18998601 -123272843 - L1ME4a LINE L1 -3 6118 5661 * 3862 189 13 14 chr9 18998599 18999376 -123272068 - L1MB8 LINE L1 0 6178 5403 300 361 66 0 chr9 18999388 18999554 -123271890 - L1ME4a LINE L1 -460 5661 5485 313 281 58 53 chr9 18999596 18999767 -123271677 - L1ME4a LINE L1 -756 5390 5219 2359 46 63 0 chr9 18999815 19000099 -123271345 - AluY SINE Alu -9 302 1 1950 72 4 16 chr9 19001219 19001469 -123269975 - L1PA5 LINE L1 0 6154 5908 2423 197 19 17 chr9 19001498 19001964 -123269480 + MLT1C LTR MaLR 1 467 0 211 296 159 0 chr9 19001974 19002062 -123269382 + MIR SINE MIR 89 190 -72 952 214 5 11 chr9 19002164 19002351 -123269093 - MER5A DNA MER1_type 0 189 4 303 28 0 0 chr9 19002768 19002804 -123268640 + (TA)n Simple_repeat Simple_repeat 1 36 0 7466 63 0 16 chr9 19002806 19003862 -123267582 - L1PA7 LINE L1 -11 6143 5093 466 113 0 0 chr9 19003862 19003924 -123267520 - AluSg/x SINE Alu -36 274 213 439 264 100 106 chr9 19004161 19004502 -123266942 - L2 LINE L2 0 3272 2934 2189 113 0 0 chr9 19005645 19005937 -123265507 + AluSg SINE Alu 1 292 -18 1987 123 35 3 chr9 19006195 19006479 -123264965 - AluSx SINE Alu -19 293 1 228 248 80 18 chr9 19007006 19007119 -123264325 - LTR67 LTR ERVL -10 547 428 234 62 0 0 chr9 19008022 19008054 -123263390 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 244 241 52 0 chr9 19008129 19008187 -123263257 + MIR3 SINE MIR 94 154 -54 2383 108 30 49 chr9 19009011 19009207 -123262237 - THE1B LTR MaLR 0 364 177 5636 18 5 0 chr9 19009207 19009816 -123261628 - L1PA3 LINE L1 0 6155 5544 2383 108 30 49 chr9 19009816 19009988 -123261456 - THE1B LTR MaLR -187 177 3 710 271 143 15 chr9 19010453 19010781 -123260663 - MLT1I LTR MaLR -39 370 1 388 275 94 110 chr9 19011720 19012571 -123258873 + L1M2 LINE L1 587 1362 -5487 292 237 248 25 chr9 19013873 19014071 -123257373 + MIR SINE MIR 18 259 -3 1853 138 65 0 chr9 19014654 19014945 -123256499 - AluSq SINE Alu -3 310 1 2470 184 15 32 chr9 19015604 19016077 -123255367 - MLT1C LTR MaLR -2 465 1 1727 216 33 25 chr9 19016223 19016585 -123254859 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr9 19017051 19017073 -123254371 + AT_rich Low_complexity Low_complexity 1 22 0 1954 132 0 7 chr9 19017188 19017488 -123253956 + AluSx SINE Alu 5 302 0 1057 215 31 110 chr9 19018449 19018868 -123252576 + MER88 LTR ERVL 79 464 0 23 78 0 0 chr9 19019330 19019381 -123252063 + AT_rich Low_complexity Low_complexity 1 51 0 2960 86 8 5 chr9 19019454 19019828 -123251616 - THE1C LTR MaLR 0 375 1 1875 138 25 0 chr9 19019890 19020190 -123251254 + AluSx SINE Alu 1 307 0 2027 130 3 25 chr9 19020561 19020877 -123250567 + AluSx SINE Alu 1 309 -3 345 206 246 40 chr9 19021099 19021225 -123250219 - MLT1J1 LTR MaLR -145 301 150 2056 220 85 5 chr9 19021360 19021806 -123249638 + MLT1E2 LTR MaLR 137 618 -8 383 207 41 90 chr9 19021825 19021970 -123249474 - MLT1J1 LTR MaLR -306 140 3 203 326 10 20 chr9 19021995 19022093 -123249351 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 795 194 8 0 chr9 19022165 19022294 -123249150 - FRAM SINE Alu -46 130 1 27 29 0 0 chr9 19022303 19022337 -123249107 + AT_rich Low_complexity Low_complexity 1 34 0 1583 154 70 7 chr9 19023738 19024023 -123247421 - AluJb SINE Alu -9 303 1 2569 151 75 0 chr9 19024918 19025388 -123246056 - MLT2B2 LTR ERVL -10 505 1 390 271 102 0 chr9 19025473 19025650 -123245794 + MER113 DNA MER1_type? 249 443 -78 4183 170 46 30 chr9 19025658 19026504 -123244940 + MER21B LTR ERV1 3 862 -1 303 325 115 50 chr9 19026976 19027404 -123244040 + L2 LINE L2 2638 3087 -185 1354 89 54 10 chr9 19027423 19027626 -123243818 + L1PA8 LINE L1 5960 6171 -1 225 269 0 0 chr9 19027757 19027809 -123243635 + L2 LINE L2 3262 3313 0 665 141 204 0 chr9 19028010 19028152 -123243292 - MIR SINE MIR -66 196 26 377 294 192 16 chr9 19028325 19028757 -123242687 + L1ME4a LINE L1 5406 5913 -208 2075 114 21 3 chr9 19030207 19030496 -123240948 + AluSx SINE Alu 3 296 -16 444 304 16 0 chr9 19030850 19030975 -123240469 - L2 LINE L2 -10 3262 3136 296 358 49 59 chr9 19031545 19031749 -123239695 + L2 LINE L2 2986 3187 -85 476 252 37 22 chr9 19031758 19031893 -123239551 - MIR SINE MIR -96 166 30 363 344 70 23 chr9 19031928 19032143 -123239301 + L1ME LINE L1 4795 5019 -1127 226 278 152 7 chr9 19032412 19032563 -123238881 + L1ME LINE L1 5561 5733 -388 1773 151 135 46 chr9 19036181 19036544 -123234900 + L1MB3 LINE L1 5682 6096 -87 2218 105 3 16 chr9 19036544 19036850 -123234594 + AluSp SINE Alu 1 302 -11 1773 151 135 46 chr9 19036850 19036944 -123234500 + L1MB3 LINE L1 6096 6180 -3 323 247 35 24 chr9 19037054 19037139 -123234305 - MIR3 SINE MIR -29 179 94 615 276 70 25 chr9 19037182 19037425 -123234019 + MIR SINE MIR 9 262 0 1647 181 14 20 chr9 19037943 19038236 -123233208 - AluJo SINE Alu -13 299 9 2172 104 0 0 chr9 19039050 19039353 -123232091 - AluSg SINE Alu 0 306 4 197 261 0 0 chr9 19039389 19039435 -123232009 + MER5B DNA MER1_type 132 177 -1 2095 165 8 3 chr9 19040066 19040441 -123231003 - Tigger3(Golem) DNA MER2_type -1 3028 2652 405 209 47 0 chr9 19040467 19040553 -123230891 - Tigger3(Golem) DNA MER2_type -2939 90 1 192 291 18 18 chr9 19040873 19040928 -123230516 - L2 LINE L2 -19 3253 3199 2170 78 4 0 chr9 19041106 19041377 -123230067 - AluY SINE Alu -5 306 35 445 259 89 15 chr9 19042105 19042240 -123229204 - MIR SINE MIR -76 186 42 269 255 163 0 chr9 19042377 19042530 -123228914 - MER102a DNA MER1_type 0 330 153 224 325 36 0 chr9 19043054 19043137 -123228307 + MIR SINE MIR 46 131 -131 215 299 76 57 chr9 19044902 19045059 -123226385 - MIR SINE MIR -45 217 58 298 248 239 9 chr9 19045349 19045462 -123225982 + MER5A DNA MER1_type 45 183 -6 1219 157 54 92 chr9 19045627 19045996 -123225448 - L1MB8 LINE L1 -17 6161 5807 252 0 0 0 chr9 19047261 19047289 -123224155 + (A)n Simple_repeat Simple_repeat 1 28 0 390 249 69 90 chr9 19047528 19047717 -123223727 - MIR SINE MIR -8 254 70 2362 87 0 16 chr9 19048340 19048650 -123222794 + AluSc SINE Alu 1 305 -4 557 269 56 20 chr9 19050000 19050249 -123221195 - L1MC4a LINE L1 -1872 5936 5679 263 253 36 0 chr9 19050398 19050481 -123220963 - MER103 DNA DNA -2 164 79 1096 189 22 40 chr9 19051073 19051295 -123220149 + MER20 DNA MER1_type 1 218 -1 433 300 75 6 chr9 19051432 19051592 -123219852 + MER46C DNA MER2_type 7 177 -161 216 0 0 0 chr9 19051759 19051783 -123219661 + (TG)n Simple_repeat Simple_repeat 1 24 0 518 244 210 6 chr9 19051997 19052173 -123219271 - MIR SINE MIR -6 256 45 326 226 42 103 chr9 19052241 19052365 -123219079 - L1ME4a LINE L1 -226 5895 5794 2275 104 3 0 chr9 19052365 19052663 -123218781 + AluSq SINE Alu 5 303 -10 326 226 42 103 chr9 19052663 19052799 -123218645 - L1ME4a LINE L1 -327 5794 5651 24 53 0 0 chr9 19053032 19053070 -123218374 + AT_rich Low_complexity Low_complexity 1 38 0 342 286 0 0 chr9 19053223 19053300 -123218144 - L2 LINE L2 -7 3265 3189 726 265 22 0 chr9 19053311 19053496 -123217948 - MIR SINE MIR 0 262 74 261 267 63 91 chr9 19053524 19053809 -123217635 - L2 LINE L2 -665 2649 2373 348 315 63 31 chr9 19054052 19054274 -123217170 - L1ME4a LINE L1 -274 5847 5619 692 119 8 0 chr9 19055899 19056017 -123215427 + (TTTCC)n Simple_repeat Simple_repeat 1 119 0 291 157 0 0 chr9 19056005 19056056 -123215388 + C-rich Low_complexity Low_complexity 1 51 0 * 186 271 21 104 chr9 19056419 19056515 -123214929 - L2 LINE L2 -1237 2077 1990 1839 251 111 48 chr9 19056561 19056671 -123214773 - L1MC4 LINE L1 0 8042 7940 288 0 0 0 chr9 19056671 19056703 -123214741 + (CA)n Simple_repeat Simple_repeat 2 33 0 1839 251 111 48 chr9 19056703 19057768 -123213676 - L1MC4 LINE L1 -102 7940 6794 291 260 47 123 chr9 19058410 19058645 -123212799 - MIR SINE MIR -25 237 21 402 21 0 0 chr9 19061377 19061424 -123210020 + (TG)n Simple_repeat Simple_repeat 1 47 0 419 335 35 17 chr9 19062084 19062257 -123209187 + MIR3 SINE MIR 31 206 -2 218 356 75 40 chr9 19062881 19063055 -123208389 + MER5A DNA MER1_type 10 189 0 352 306 117 27 chr9 19065394 19065616 -123205828 - L1ME4a LINE L1 -264 5857 5616 284 327 181 0 chr9 19066997 19067196 -123204248 + MIR SINE MIR 2 236 -26 193 288 55 27 chr9 19067507 19067580 -123203864 + MIR SINE MIR 44 118 -90 3029 91 21 2 chr9 19067946 19068376 -123203068 - L1PA12 LINE L1 -2 6166 5729 457 302 29 7 chr9 19070534 19070673 -123200771 + MIR SINE MIR 11 152 -110 2654 29 0 3 chr9 19070840 19071148 -123200296 + AluY SINE Alu 1 307 -4 600 318 69 31 chr9 19071279 19071568 -123199876 - L2 LINE L2 -14 3299 3000 2100 246 107 20 chr9 19072101 19073088 -123198356 + L1ME1 LINE L1 5064 6134 -32 338 179 0 0 chr9 19074340 19074407 -123197037 + L1MB8 LINE L1 5804 5870 -308 7318 106 16 22 chr9 19074410 19080090 -123191354 - L1PA7 LINE L1 -4 6465 718 255 332 145 37 chr9 19080262 19080377 -123191067 - MIR SINE MIR 0 262 161 228 35 0 0 chr9 19080377 19080406 -123191038 + (TC)n Simple_repeat Simple_repeat 2 30 0 255 332 145 37 chr9 19080406 19080504 -123190940 - MIR SINE MIR -101 161 26 299 209 174 0 chr9 19080514 19080600 -123190844 + MIR SINE MIR 117 217 -45 225 340 29 10 chr9 19080624 19080727 -123190717 + MIR SINE MIR 139 243 -19 2505 140 26 28 chr9 19080781 19081210 -123190234 + Tigger2a DNA MER2_type 1 428 -6 25 0 0 0 chr9 19081562 19081587 -123189857 + AT_rich Low_complexity Low_complexity 1 25 0 1367 168 134 11 chr9 19082067 19082329 -123189115 - AluSg SINE Alu -13 297 4 2176 89 45 0 chr9 19083331 19083622 -123187822 - AluSg SINE Alu -6 304 1 194 208 19 0 chr9 19083950 19084003 -123187441 + (TG)n Simple_repeat Simple_repeat 1 54 0 308 293 99 36 chr9 19084068 19084542 -123186902 - L1M4 LINE L1 -1377 5005 4502 521 234 21 0 chr9 19084566 19084711 -123186733 - L1MEc LINE L1 -4688 1708 1561 484 255 64 69 chr9 19084908 19085484 -123185960 - L1M4 LINE L1 -2887 3495 2923 895 151 14 0 chr9 19085579 19085718 -123185726 + MER46A DNA MER2_type 6 146 -90 234 288 77 30 chr9 19085737 19085970 -123185474 - L1M4 LINE L1 -3571 2811 2568 403 228 78 72 chr9 19086034 19086214 -123185230 - L1M4 LINE L1 -3927 2457 2277 380 276 126 40 chr9 19086222 19086396 -123185048 - HAL1 LINE L1 -1157 1350 1162 455 216 108 32 chr9 19086550 19086699 -123184745 + MSTC LTR MaLR 3 156 -270 26 30 0 0 chr9 19088568 19088601 -123182843 + AT_rich Low_complexity Low_complexity 1 33 0 640 92 0 10 chr9 19089662 19089760 -123181684 + AluY SINE Alu 209 305 -6 204 312 174 37 chr9 19090131 19090240 -123181204 - L2 LINE L2 -28 3244 3121 334 303 86 34 chr9 19090403 19090578 -123180866 + MIR SINE MIR 14 197 -65 597 260 45 0 chr9 19090640 19090794 -123180650 + MIR SINE MIR 76 236 -26 209 206 93 52 chr9 19092861 19092958 -123178486 + MIR SINE MIR 84 184 -78 216 267 57 76 chr9 19092979 19093084 -123178360 + MIR SINE MIR 51 153 -109 457 237 118 24 chr9 19093169 19093338 -123178106 + Charlie8 DNA MER1_type 84 268 -2149 277 393 16 0 chr9 19093580 19093702 -123177742 + MIR3 SINE MIR 64 187 -21 451 311 178 22 chr9 19093746 19093845 -123177599 + L3 LINE CR1 446 528 -1049 2373 106 0 0 chr9 19093845 19094156 -123177288 + AluSx SINE Alu 1 311 -1 451 311 178 22 chr9 19094156 19094471 -123176973 + L3 LINE CR1 528 925 -652 313 331 126 11 chr9 19094728 19094903 -123176541 + MIR SINE MIR 3 197 -65 692 249 63 39 chr9 19094929 19095214 -123176230 - L1M4 LINE L1 -3317 2829 2538 2249 80 20 7 chr9 19095669 19095968 -123175476 - AluSg SINE Alu -7 303 1 25 0 0 0 chr9 19096345 19096370 -123175074 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 19097004 19097027 -123174417 + AT_rich Low_complexity Low_complexity 1 23 0 193 333 0 13 chr9 19097399 19097474 -123173970 + MIR SINE MIR 102 175 -87 1479 238 90 38 chr9 19097932 19098466 -123172978 - L1MC4 LINE L1 0 8042 7481 2555 226 125 60 chr9 19098468 19099511 -123171933 - L1MC4a LINE L1 -795 7013 5897 306 0 0 0 chr9 19099511 19099545 -123171899 + (TG)n Simple_repeat Simple_repeat 2 35 0 2555 226 125 60 chr9 19099545 19099570 -123171874 - L1MC4a LINE L1 -1911 5897 5875 1616 225 43 11 chr9 19099604 19100049 -123171395 - L1MC4a LINE L1 -2033 5775 5317 2723 215 103 14 chr9 19100165 19101412 -123170032 - L1MB4 LINE L1 0 6180 4828 1711 200 0 3 chr9 19101618 19101923 -123169521 - AluJo SINE Alu -8 304 1 2927 212 85 23 chr9 19102055 19102750 -123168694 - L1MD2 LINE L1 -1 6358 5613 1391 249 49 73 chr9 19102750 19103377 -123168067 - LTR9 LTR ERV1 0 612 1 2927 212 85 23 chr9 19103377 19103422 -123168022 - L1MD2 LINE L1 -746 5613 5572 928 180 38 11 chr9 19103788 19103971 -123167473 - MER5A DNA MER1_type 0 189 2 1385 136 0 0 chr9 19104383 19104604 -123166840 + L1MA2 LINE L1 6084 6304 0 317 294 37 37 chr9 19105751 19105887 -123165557 + L2 LINE L2 2175 2310 -1004 1834 138 33 16 chr9 19106107 19106411 -123165033 - AluJb SINE Alu -3 309 1 251 119 0 0 chr9 19107167 19107209 -123164235 - MLT1H LTR MaLR -26 541 500 1827 142 4 0 chr9 19107227 19107518 -123163926 - AluSx SINE Alu 0 305 14 990 242 77 79 chr9 19107519 19108011 -123163433 - MLT1H LTR MaLR -48 501 11 2398 76 3 0 chr9 19108630 19108934 -123162510 + AluY SINE Alu 1 305 -6 2195 125 0 0 chr9 19109289 19109592 -123161852 + AluSx SINE Alu 1 303 -9 183 42 0 0 chr9 19110590 19110614 -123160830 + (TA)n Simple_repeat Simple_repeat 1 24 0 21511 39 3 0 chr9 19110614 19114040 -123157404 - L1PA4 LINE L1 -19 6136 2707 5791 89 27 27 chr9 19114463 19115660 -123155784 + L1PA8A LINE L1 4936 6131 0 848 294 119 21 chr9 19115887 19116398 -123155046 + L1MCc LINE L1 24 584 -5839 2293 255 73 32 chr9 19116513 19117819 -123153625 + L1MCc LINE L1 808 2179 -4762 272 143 0 143 chr9 19118042 19118098 -123153346 - MLT2C1 LTR ERVL 0 397 355 1679 199 32 18 chr9 19118144 19118485 -123152959 - MLT2C1 LTR ERVL -51 346 1 2705 22 0 0 chr9 19118512 19118829 -123152615 - L1PA2 LINE L1 -1092 5054 4738 7809 13 5 0 chr9 19118829 19119917 -123151527 + L1PA2 LINE L1 5063 6154 -1 5068 159 29 24 chr9 19121462 19122447 -123148997 + L1MC3 LINE L1 6700 7689 -96 942 297 127 10 chr9 19122492 19122969 -123148475 + L2 LINE L2 2781 3313 0 228 350 49 55 chr9 19123043 19123206 -123148238 + L2 LINE L2 3106 3267 -5 492 262 123 24 chr9 19124919 19125171 -123146273 + L1MC4a LINE L1 5574 5850 -1958 1990 140 7 3 chr9 19125328 19125620 -123145824 + AluSx SINE Alu 1 293 -19 2570 89 20 3 chr9 19125696 19126045 -123145399 - THE1A LTR MaLR 0 355 1 1033 155 107 19 chr9 19127089 19127295 -123144149 - MSTA LTR MaLR 0 428 205 198 0 0 0 chr9 19127829 19127851 -123143593 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 274 335 73 34 chr9 19128912 19129091 -123142353 + MIR3 SINE MIR 2 187 -21 2467 109 11 16 chr9 19129375 19129752 -123141692 - THE1C LTR MaLR 0 375 1 2289 104 0 0 chr9 19130189 19130487 -123140957 - AluSg SINE Alu -12 298 1 222 302 71 32 chr9 19131101 19131227 -123140217 + MIR SINE MIR 16 146 -62 2214 109 3 3 chr9 19131840 19132142 -123139302 + AluSc SINE Alu 1 302 -7 285 340 106 11 chr9 19132718 19132983 -123138461 - L1MC/D LINE L1 -2000 5808 5519 308 102 68 0 chr9 19133800 19133859 -123137585 + MADE1 DNA Mariner 18 80 0 190 220 85 34 chr9 19133956 19134015 -123137429 + MIR SINE MIR 83 144 -64 412 252 70 7 chr9 19134191 19134334 -123137110 + L1MEd LINE L1 28 179 -5940 559 301 132 83 chr9 19134457 19135462 -123135982 + L1 LINE L1 4167 5221 -925 24 32 0 0 chr9 19136202 19136233 -123135211 + AT_rich Low_complexity Low_complexity 1 31 0 8404 173 41 5 chr9 19136371 19138497 -123132947 + L1P4 LINE L1 3595 5795 -370 2401 146 54 2 chr9 19138515 19138925 -123132519 + L1PA15 LINE L1 5727 6157 -8 23 33 0 0 chr9 19138947 19138977 -123132467 + AT_rich Low_complexity Low_complexity 1 30 0 196 363 71 18 chr9 19139907 19140020 -123131424 - L3 LINE CR1 -3 1574 1456 204 178 22 0 chr9 19140125 19140170 -123131274 + MIR SINE MIR 85 130 -78 306 0 0 0 chr9 19142646 19142680 -123128764 + (CA)n Simple_repeat Simple_repeat 2 35 0 384 319 136 6 chr9 19142763 19142932 -123128512 - L2 LINE L2 -3 3269 3079 1671 86 10 6 chr9 19143059 19143357 -123128087 + THE1C LTR MaLR 1 375 0 1467 164 62 17 chr9 19143459 19143751 -123127693 + L1MB3 LINE L1 5587 5891 -292 669 174 294 0 chr9 19143786 19144032 -123127412 - MER44D DNA MER2_type -6 599 7 295 276 20 31 chr9 19144057 19144155 -123127289 + MIR SINE MIR 166 262 0 3034 231 44 24 chr9 19144276 19145768 -123125676 - L1ME2 LINE L1 -9 6224 4696 300 137 0 0 chr9 19145788 19145839 -123125605 + (CCCA)n Simple_repeat Simple_repeat 2 52 0 986 242 64 58 chr9 19145842 19146185 -123125259 - L1ME2 LINE L1 -2005 4210 3866 * 5227 238 50 63 chr9 19146183 19148155 -123123289 - L1ME2 LINE L1 -2806 3409 1413 272 175 0 0 chr9 19148155 19148212 -123123232 - FLAM_A SINE Alu 0 133 77 5227 238 50 63 chr9 19148212 19148652 -123122792 - L1ME2 LINE L1 -4802 1413 969 2182 162 0 16 chr9 19148652 19149023 -123122421 - MER47A DNA MER2_type 0 366 2 5227 238 50 63 chr9 19149023 19149983 -123121461 - L1ME2 LINE L1 -5246 969 45 316 347 102 14 chr9 19150223 19150439 -123121005 - L3 LINE CR1 -137 1440 1206 218 261 0 0 chr9 19150438 19150484 -123120960 + MIR SINE MIR 98 143 -65 * 184 290 100 50 chr9 19150517 19150617 -123120827 - L2 LINE L2 -25 3247 3143 338 247 70 95 chr9 19151376 19151406 -123120038 - MER5A DNA MER1_type -35 154 125 1755 168 0 24 chr9 19151406 19151704 -123119740 + AluJb SINE Alu 1 291 -21 338 247 70 95 chr9 19151704 19151831 -123119613 - MER5A DNA MER1_type -64 125 1 246 217 203 58 chr9 19152034 19152172 -123119272 + MIR SINE MIR 78 235 -27 1868 160 0 23 chr9 19152469 19152775 -123118669 + AluJo SINE Alu 1 299 -13 31 26 0 0 chr9 19152861 19152899 -123118545 + AT_rich Low_complexity Low_complexity 1 38 0 2380 153 15 5 chr9 19153260 19153659 -123117785 - MER57A LTR ERV1 0 403 1 230 185 62 74 chr9 19154439 19154520 -123116924 - L1ME LINE L1 -280 5841 5762 909 150 61 33 chr9 19154667 19154847 -123116597 + MLT2B2 LTR ERVL 323 507 -8 253 256 103 26 chr9 19155027 19155144 -123116300 - MIR SINE MIR -100 162 37 24 32 0 0 chr9 19155463 19155494 -123115950 + AT_rich Low_complexity Low_complexity 1 31 0 551 208 15 8 chr9 19155494 19155624 -123115820 - L1PA7 LINE L1 -3 6151 6021 1531 236 43 89 chr9 19156764 19157773 -123113671 - L1M4c LINE L1 -4795 2164 1192 2169 266 33 55 chr9 19158242 19159177 -123112267 - L1M4c LINE L1 -5652 1207 3 207 254 139 74 chr9 19159244 19159366 -123112078 + L2 LINE L2 3184 3313 0 806 316 48 30 chr9 19159600 19160140 -123111304 + L1ME3A LINE L1 5312 5816 -305 434 270 142 0 chr9 19160284 19160432 -123111012 + MER58C DNA MER1_type 47 215 0 533 317 55 35 chr9 19160511 19160908 -123110536 + LTR16C LTR ERVL 87 491 0 32 0 0 0 chr9 19161403 19161435 -123110009 + AT_rich Low_complexity Low_complexity 1 32 0 10103 94 11 4 chr9 19161446 19163683 -123107761 - L1PA7 LINE L1 -4 6150 3894 931 157 19 6 chr9 19164191 19164350 -123107094 + MLT1A2 LTR MaLR 1 161 -213 381 58 0 0 chr9 19164387 19164439 -123107005 + (GA)n Simple_repeat Simple_repeat 2 53 0 784 233 5 43 chr9 19164454 19164664 -123106780 + MLT1A2 LTR MaLR 187 388 -2 191 314 20 0 chr9 19164864 19164915 -123106529 + L2 LINE L2 3221 3272 0 258 316 120 26 chr9 19165419 19165536 -123105908 - L2 LINE L2 -37 3235 3108 254 233 19 78 chr9 19165880 19165983 -123105461 + MIR SINE MIR 30 126 -82 26 0 0 0 chr9 19166216 19166242 -123105202 + AT_rich Low_complexity Low_complexity 1 26 0 1221 51 0 6 chr9 19166244 19166401 -123105043 - L1PA3 LINE L1 -3 6152 5997 4339 18 0 2 chr9 19166401 19166899 -123104545 + L1PA3 LINE L1 5458 5954 -201 188 242 189 21 chr9 19167418 19167513 -123103931 - MIR SINE MIR -84 178 68 1891 178 21 23 chr9 19167516 19167943 -123103501 + L1MB7 LINE L1 5744 6169 -15 1242 195 8 41 chr9 19168426 19168672 -123102772 - MER8 DNA MER2_type 0 239 2 185 160 0 40 chr9 19169135 19169185 -123102259 + (TATG)n Simple_repeat Simple_repeat 4 51 0 3710 55 2 1 chr9 19169849 19170326 -123101118 + L1PA7 LINE L1 5670 6150 -4 263 336 66 8 chr9 19171029 19171151 -123100293 + L2 LINE L2 3162 3290 -23 242 161 0 81 chr9 19171378 19171440 -123100004 - MLT2B1 LTR ERVL 0 520 464 384 240 0 0 chr9 19171442 19171542 -123099902 + (TA)n Simple_repeat Simple_repeat 1 100 0 231 100 0 50 chr9 19171551 19171591 -123099853 - MLT2C1 LTR ERVL -48 366 329 297 0 0 0 chr9 19171607 19171640 -123099804 + (GA)n Simple_repeat Simple_repeat 2 34 0 1559 196 27 15 chr9 19171644 19171980 -123099464 - MLT2C1 LTR ERVL -57 340 1 234 246 90 126 chr9 19171985 19172152 -123099292 - MIR3 SINE MIR -9 199 39 270 0 0 0 chr9 19173431 19173461 -123097983 + (TATTG)n Simple_repeat Simple_repeat 2 31 0 375 351 48 11 chr9 19173775 19173963 -123097481 - MIR SINE MIR -50 212 18 220 262 0 0 chr9 19176488 19176530 -123094914 + polypyrimidine Low_complexity Low_complexity 4 45 0 288 0 0 0 chr9 19176535 19176567 -123094877 + (CA)n Simple_repeat Simple_repeat 2 33 0 293 264 99 25 chr9 19176977 19177098 -123094346 + L3 LINE CR1 1404 1533 -44 1887 158 7 10 chr9 19177335 19177633 -123093811 - AluJb SINE Alu -15 297 1 2330 67 7 7 chr9 19179041 19179341 -123092103 - AluY SINE Alu -11 300 1 354 379 49 5 chr9 19179777 19179980 -123091464 + MIR SINE MIR 20 231 -31 2115 119 3 0 chr9 19180630 19180938 -123090506 - AluSx SINE Alu 0 310 2 267 305 181 58 chr9 19181591 19181883 -123089561 - L2 LINE L2 0 3272 2945 486 287 126 51 chr9 19184165 19184423 -123087021 + L3 LINE CR1 1134 1418 -159 381 58 0 0 chr9 19184423 19184475 -123086969 + (TG)n Simple_repeat Simple_repeat 2 53 0 486 287 126 51 chr9 19184475 19184509 -123086935 + L3 LINE CR1 1418 1448 -129 212 139 0 23 chr9 19185434 19185477 -123085967 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 955 182 0 13 chr9 19185488 19185647 -123085797 - AluJo SINE Alu -37 275 119 9483 160 7 8 chr9 19185667 19187357 -123084087 - L1PA13 LINE L1 0 6163 4440 2417 86 0 0 chr9 19187357 19187658 -123083786 + AluY SINE Alu 1 301 -10 9483 160 7 8 chr9 19187658 19188434 -123083010 - L1PA13 LINE L1 -1723 4440 3665 677 226 15 0 chr9 19188434 19188567 -123082877 - AluJo SINE Alu -177 135 1 612 257 8 55 chr9 19188979 19189216 -123082228 - MER58B DNA MER1_type -37 304 79 6660 35 0 7 chr9 19189286 19190131 -123081313 - L1PA5 LINE L1 -1 6153 5315 2530 32 12 17 chr9 19190127 19190472 -123080972 + L1PA5 LINE L1 5000 5342 -804 * 2210 128 0 3 chr9 19191245 19191557 -123079887 + AluSx SINE Alu 2 312 0 298 253 197 8 chr9 19192455 19192635 -123078809 + MIR SINE MIR 3 262 0 250 289 0 0 chr9 19192996 19193048 -123078396 - MER91 DNA MER1_type -1 139 88 216 0 0 0 chr9 19195088 19195112 -123076332 + (CAAAG)n Simple_repeat Simple_repeat 4 27 0 1296 183 88 60 chr9 19196227 19196681 -123074763 + MLT1C LTR MaLR 1 467 0 382 292 46 20 chr9 19196681 19196833 -123074611 - MIR SINE MIR -67 141 3 22 0 0 0 chr9 19196930 19196952 -123074492 + AT_rich Low_complexity Low_complexity 1 22 0 397 295 132 37 chr9 19198573 19198868 -123072576 + L2 LINE L2 2950 3272 0 1380 147 99 3 chr9 19199475 19199767 -123071677 - MER33 DNA MER1_type -4 320 1 202 325 70 26 chr9 19200505 19200619 -123070825 + L2 LINE L2 3154 3272 0 2323 103 0 0 chr9 19201055 19201357 -123070087 + AluY SINE Alu 1 302 -9 201 280 155 36 chr9 19201480 19201648 -123069796 + L2 LINE L2 2776 2963 -351 475 302 182 26 chr9 19201797 19202259 -123069185 + L2 LINE L2 2712 3241 -72 667 275 132 52 chr9 19202334 19202841 -123068603 + L2 LINE L2 2637 3310 -3 381 264 54 31 chr9 19202848 19202977 -123068467 + L2 LINE L2 3182 3313 0 217 359 99 15 chr9 19203216 19203347 -123068097 - MIR SINE MIR -101 161 20 587 138 8 115 chr9 19203444 19203574 -123067870 + MLT1E LTR MaLR 49 164 -429 * 1299 251 44 58 chr9 19203569 19204051 -123067393 + MLT1E LTR MaLR 119 593 0 267 213 0 0 chr9 19204297 19204344 -123067100 + L2 LINE L2 3251 3297 -16 8194 205 31 8 chr9 19205285 19208210 -123063234 - L1MB3 LINE L1 0 6183 3191 215 250 118 0 chr9 19208351 19208419 -123063025 + MIR SINE MIR 107 182 -80 694 249 88 0 chr9 19209731 19209924 -123061520 + MER63A DNA MER1_type 1 210 0 1043 202 62 87 chr9 19210465 19210821 -123060623 - MLT1A2 LTR MaLR -7 367 21 349 237 76 46 chr9 19211060 19211191 -123060253 - MIR SINE MIR -4 258 124 444 234 211 11 chr9 19211219 19211394 -123060050 - L2 LINE L2 -29 3284 3075 1967 254 88 19 chr9 19211452 19212030 -123059414 - L2 LINE L2 -474 2840 2223 231 312 26 13 chr9 19212173 19212250 -123059194 + MER5A DNA MER1_type 111 188 -1 223 351 30 38 chr9 19212336 19212467 -123058977 + MIR SINE MIR 13 142 -120 608 202 9 0 chr9 19212934 19213043 -123058401 + MER5B DNA MER1_type 1 110 -68 651 269 197 3 chr9 19213044 19213430 -123058014 - L1ME3A LINE L1 0 6170 5710 7588 11 0 0 chr9 19213448 19214494 -123056950 - L1HS LINE L1 -3 6152 5107 782 228 45 4 chr9 19214492 19214709 -123056735 - L1ME3A LINE L1 -444 5677 5467 * 265 350 65 74 chr9 19214723 19215032 -123056412 + L2 LINE L2 2955 3260 -12 21 36 0 0 chr9 19215720 19215748 -123055696 + AT_rich Low_complexity Low_complexity 1 28 0 785 259 8 38 chr9 19215765 19216004 -123055440 - MLT2E LTR ERVL -396 232 1 263 323 0 73 chr9 19217495 19217619 -123053825 + L2 LINE L2 3078 3192 -80 1501 197 20 24 chr9 19217683 19217978 -123053466 - AluJo SINE Alu -18 294 1 228 336 16 105 chr9 19218087 19218334 -123053110 + L2 LINE L2 2987 3211 -61 234 299 23 58 chr9 19221186 19221273 -123050171 - MIR SINE MIR -158 104 21 281 316 40 46 chr9 19221544 19221696 -123049748 + L3 LINE CR1 1418 1568 -9 309 279 150 29 chr9 19221763 19221903 -123049541 + MER5A DNA MER1_type 30 186 -3 788 164 0 20 chr9 19222779 19222931 -123048513 - MER47A DNA MER2_type -198 168 20 1744 152 6 67 chr9 19222991 19223352 -123048092 - MLT2B3 LTR ERVL -215 339 1 269 303 118 0 chr9 19223648 19223724 -123047720 - MIR3 SINE MIR -14 194 110 213 125 0 62 chr9 19224437 19224485 -123046959 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 456 211 131 46 chr9 19224579 19224754 -123046690 - MIR SINE MIR -12 250 61 980 70 31 0 chr9 19225885 19226013 -123045431 - L1MA2 LINE L1 -9 6295 6164 213 286 78 52 chr9 19226013 19226090 -123045354 + L2 LINE L2 3176 3254 -18 264 274 137 0 chr9 19227821 19227938 -123043506 - MIR SINE MIR -56 206 74 2159 136 0 3 chr9 19230502 19230812 -123040632 + AluSx SINE Alu 1 309 -3 2729 99 8 19 chr9 19231025 19231389 -123040055 - THE1B LTR MaLR -4 360 1 1083 248 91 56 chr9 19231493 19231675 -123039769 + L1M4 LINE L1 4219 4393 -1753 2421 80 0 0 chr9 19231675 19231974 -123039470 + AluY SINE Alu 1 299 -12 1083 248 91 56 chr9 19231974 19232385 -123039059 + L1M4 LINE L1 4393 4833 -1313 2447 91 3 0 chr9 19332727 19333036 -122938408 - AluY SINE Alu -1 310 1 24 53 0 0 chr9 19333162 19333200 -122938244 + AT_rich Low_complexity Low_complexity 1 38 0 268 378 61 12 chr9 19334832 19334996 -122936448 - L2 LINE L2 0 3272 3101 363 302 9 9 chr9 19336554 19336670 -122934774 - MER5A DNA MER1_type -72 117 2 444 280 56 0 chr9 19338201 19338326 -122933118 - L2 LINE L2 -5 3308 3177 422 176 0 0 chr9 19340023 19340091 -122931353 + AluS SINE Alu 1 68 -245 200 35 35 0 chr9 19340212 19340241 -122931203 + (TA)n Simple_repeat Simple_repeat 2 31 0 1848 93 0 4 chr9 19340577 19340824 -122930620 + AluSc SINE Alu 1 246 -63 211 150 0 25 chr9 19341090 19341130 -122930314 + (TA)n Simple_repeat Simple_repeat 1 39 0 287 274 186 0 chr9 19341356 19341458 -122929986 - L2 LINE L2 -9 3304 3184 252 319 164 43 chr9 19343372 19343488 -122927956 - L2 LINE L2 0 3272 3143 1110 309 124 45 chr9 19343702 19344676 -122926768 - L2 LINE L2 -1285 2029 979 216 309 12 36 chr9 19345378 19345462 -122925982 + L2 LINE L2 2587 2668 -646 251 231 29 87 chr9 19345578 19345682 -122925762 + MIR3 SINE MIR 67 164 -44 268 231 111 19 chr9 19345794 19345902 -122925542 + MIR SINE MIR 114 231 -31 405 0 0 0 chr9 19346098 19346143 -122925301 + (TG)n Simple_repeat Simple_repeat 2 46 0 1867 9 0 0 chr9 19347486 19347705 -122923739 + L1P1 LINE L1 5469 5687 -468 2183 108 0 3 chr9 19347735 19348032 -122923412 + AluSq SINE Alu 1 296 -17 441 260 22 39 chr9 19348059 19348240 -122923204 - MER5B DNA MER1_type 0 178 1 314 258 80 116 chr9 19349595 19349897 -122921547 - L1M2 LINE L1 -5861 988 698 184 372 54 16 chr9 19350213 19350342 -122921102 + MIR3 SINE MIR 12 145 -63 334 291 17 0 chr9 19351329 19351430 -122920014 - MER5A DNA MER1_type -36 142 50 289 273 91 33 chr9 19351532 19351653 -122919791 - MIR3 SINE MIR -68 140 13 1321 64 0 5 chr9 19351950 19352138 -122919306 - L1P LINE L1 -1394 4752 4566 301 350 169 25 chr9 19352535 19352889 -122918555 - L2 LINE L2 -103 3210 2806 328 310 39 17 chr9 19353148 19353281 -122918163 - MIR SINE MIR -65 143 16 1909 172 0 3 chr9 19354185 19354487 -122916957 - AluJb SINE Alu -11 301 1 925 117 0 0 chr9 19354801 19354938 -122916506 + MSTA LTR MaLR 1 137 -291 308 227 207 27 chr9 19355046 19355196 -122916248 + L1MCa LINE L1 1238 1414 -5012 1882 144 22 11 chr9 19355252 19355529 -122915915 + AluSx SINE Alu 1 280 -32 309 202 52 107 chr9 19355555 19355807 -122915637 + L1MCa LINE L1 1650 1887 -4720 1270 236 63 23 chr9 19355942 19356468 -122914976 + L1MCa LINE L1 2075 2621 -3986 734 190 0 14 chr9 19358010 19358152 -122913292 + MLT1A1 LTR MaLR 226 365 0 1212 264 112 38 chr9 19358152 19358192 -122913252 - L2 LINE L2 -490 2824 2788 2370 107 107 13 chr9 19358192 19358583 -122912861 + MSTA LTR MaLR 1 428 0 1212 264 112 38 chr9 19358583 19359049 -122912395 - L2 LINE L2 -526 2788 2280 1703 208 150 73 chr9 19359050 19359651 -122911793 - MLT1E1 LTR MaLR -7 647 1 1227 178 14 5 chr9 19359831 19360045 -122911399 - AluJo SINE Alu -13 299 84 522 160 0 101 chr9 19360058 19360142 -122911302 - MIR SINE MIR -117 145 75 2106 105 32 0 chr9 19360142 19360427 -122911017 + AluSg1 SINE Alu 1 294 -15 522 160 0 101 chr9 19360427 19360461 -122910983 - MIR SINE MIR -187 75 39 354 328 25 45 chr9 19360489 19360690 -122910754 - L2 LINE L2 -1154 2160 1964 294 261 142 52 chr9 19360755 19360966 -122910478 - L2 LINE L2 0 3313 3084 1623 196 40 14 chr9 19360996 19361348 -122910096 - MLT1A1 LTR MaLR -4 361 1 760 191 65 84 chr9 19361348 19361429 -122910015 - MLT1B LTR MaLR -133 257 176 318 67 0 0 chr9 19361429 19361474 -122909970 + (CA)n Simple_repeat Simple_repeat 2 46 0 275 0 0 28 chr9 19361478 19361514 -122909930 + (GA)n Simple_repeat Simple_repeat 1 35 0 760 191 65 84 chr9 19361514 19361689 -122909755 - MLT1B LTR MaLR -217 173 1 21 0 0 0 chr9 19363329 19363350 -122908094 + AT_rich Low_complexity Low_complexity 1 21 0 3777 175 51 40 chr9 19363590 19364694 -122906750 + L1MB7 LINE L1 4915 6039 -145 222 37 0 0 chr9 19364694 19364721 -122906723 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3777 175 51 40 chr9 19364721 19364857 -122906587 + L1MB7 LINE L1 6039 6172 -12 236 200 0 0 chr9 19365476 19365531 -122905913 + HAL1 LINE L1 143 197 -2310 1013 255 69 65 chr9 19365692 19365964 -122905480 + HAL1 LINE L1 1115 1385 -1122 1253 155 32 9 chr9 19365964 19366183 -122905261 + MER58A DNA MER1_type 1 224 0 1013 255 69 65 chr9 19366183 19366478 -122904966 + HAL1 LINE L1 1385 1684 -823 3434 181 15 54 chr9 19366796 19367615 -122903829 + L1MB8 LINE L1 5383 6169 -9 4280 259 75 33 chr9 19367900 19370658 -122900786 + L1M4 LINE L1 2335 5250 -896 361 164 33 0 chr9 19370669 19370730 -122900714 + AluS SINE Alu 1 63 -238 221 336 45 9 chr9 19371125 19371235 -122900209 + MIR SINE MIR 93 206 -56 186 43 0 0 chr9 19373519 19373542 -122897902 + (T)n Simple_repeat Simple_repeat 1 23 0 3453 19 1 0 chr9 19374745 19375412 -122896032 - L1P1 LINE L1 -534 5621 4954 4029 25 2 0 chr9 19375412 19375886 -122895558 + L1PA3 LINE L1 5679 6155 0 342 268 100 7 chr9 19375922 19376092 -122895352 + MIR3 SINE MIR 1 189 -19 13982 28 15 1 chr9 19377577 19378911 -122892533 - L1PA3 LINE L1 -3 6152 4839 189 0 0 0 chr9 19378911 19378932 -122892512 + (TTCTG)n Simple_repeat Simple_repeat 4 24 0 13982 28 15 1 chr9 19378932 19380412 -122891032 - L1PA3 LINE L1 -1316 4839 3310 7954 10 0 0 chr9 19380412 19381812 -122889632 + L1PA2 LINE L1 4755 6154 -1 467 252 91 47 chr9 19382250 19382504 -122888940 - MLT1I LTR MaLR 0 409 145 226 172 31 47 chr9 19382828 19382892 -122888552 - L1MB2 LINE L1 -3 6168 6106 713 202 0 0 chr9 19383352 19383476 -122887968 - FLAM_C SINE Alu -18 125 2 1950 147 0 13 chr9 19383815 19384122 -122887322 + AluJb SINE Alu 10 312 0 541 162 15 17 chr9 19384122 19384257 -122887187 + L1MB3 LINE L1 5656 5788 -392 1804 161 27 15 chr9 19384257 19384593 -122886851 + MER2 DNA MER2_type 1 340 -5 31 44 0 0 chr9 19384593 19384638 -122886806 + AT_rich Low_complexity Low_complexity 1 45 0 267 207 73 0 chr9 19384659 19384741 -122886703 - L1MC4 LINE L1 -1339 6703 6616 324 221 0 0 chr9 19384744 19384821 -122886623 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 1499 223 20 15 chr9 19384822 19385213 -122886231 + L1MB3 LINE L1 5782 6174 -9 814 247 45 35 chr9 19385514 19385826 -122885618 - L1M3 LINE L1 -433 5750 5436 225 196 0 0 chr9 19387914 19387960 -122883484 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 301 220 50 40 chr9 19388760 19388860 -122882584 + MIR SINE MIR 147 247 -15 375 320 8 8 chr9 19389194 19389322 -122882122 - MIR SINE MIR -13 249 122 204 364 0 11 chr9 19389380 19389468 -122881976 - MIR SINE MIR -155 107 21 563 227 121 42 chr9 19389590 19389775 -122881669 - MIR SINE MIR -55 153 9 2464 78 0 3 chr9 19391174 19391481 -122879963 - AluSc SINE Alu -3 306 1 23 54 0 0 chr9 19394625 19394662 -122876782 + AT_rich Low_complexity Low_complexity 1 37 0 652 259 210 27 chr9 19397515 19397931 -122873513 - MLT1D LTR MaLR 0 505 1 2102 142 132 5 chr9 19397989 19398369 -122873075 - MSTA LTR MaLR 0 428 1 3426 274 193 40 chr9 19398678 19400532 -122870912 + L2 LINE L2 810 2945 -369 418 198 123 19 chr9 19400925 19401031 -122870413 + MIR3 SINE MIR 81 197 -11 425 354 113 46 chr9 19404142 19405113 -122866331 - L2 LINE L2 0 3272 2243 346 80 0 0 chr9 19405130 19405180 -122866264 - L1PA3 LINE L1 -3 6152 6103 228 67 0 0 chr9 19405180 19405210 -122866234 + (A)n Simple_repeat Simple_repeat 1 30 0 1204 186 6 13 chr9 19406184 19406517 -122864927 - MLT1A1 LTR MaLR 0 365 2 1091 150 45 37 chr9 19406526 19406792 -122864652 + L1MB4 LINE L1 5899 6156 -10 1645 166 9 77 chr9 19407383 19407709 -122863735 - AluJo SINE Alu -8 304 1 2449 142 59 10 chr9 19408195 19408603 -122862841 - MSTA LTR MaLR 0 428 1 8952 25 0 0 chr9 19408616 19410447 -122860997 + L1PA3 LINE L1 4325 6155 0 510 17 0 0 chr9 19410520 19410579 -122860865 + (TG)n Simple_repeat Simple_repeat 2 60 0 779 197 7 20 chr9 19410614 19410766 -122860678 - AluJo SINE Alu -162 150 1 1125 213 90 54 chr9 19410766 19411357 -122860087 + MER114 LTR ERV 37 648 0 194 192 0 14 chr9 19411594 19411667 -122859777 + (TA)n Simple_repeat Simple_repeat 1 72 0 375 23 0 0 chr9 19411772 19411816 -122859628 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 330 55 0 chr9 19413369 19413460 -122857984 - MIR SINE MIR -91 171 76 1816 140 47 4 chr9 19414397 19414676 -122856768 - AluSx SINE Alu -21 291 1 21 0 0 0 chr9 19414821 19414842 -122856602 + AT_rich Low_complexity Low_complexity 1 21 0 46 0 0 0 chr9 19414975 19415021 -122856423 + AT_rich Low_complexity Low_complexity 1 46 0 236 207 16 17 chr9 19415102 19415179 -122856265 - L1ME LINE L1 -297 5824 5745 397 236 0 47 chr9 19415186 19415292 -122856152 - LTR33 LTR ERVL 0 521 421 428 282 82 24 chr9 19415579 19415749 -122855695 - LTR33 LTR ERVL -327 194 15 312 313 106 43 chr9 19415761 19415969 -122855475 - L1ME LINE L1 -380 5741 5521 259 224 41 41 chr9 19415992 19416090 -122855354 - L1ME LINE L1 -2337 5471 5374 432 193 79 14 chr9 19416150 19416290 -122855154 - L1ME LINE L1 -824 5322 5174 1480 197 59 3 chr9 19416328 19416617 -122854827 - AluJo SINE Alu -7 305 1 902 150 0 0 chr9 19416636 19416769 -122854675 - FLAM_C SINE Alu 0 133 1 323 102 0 0 chr9 19417113 19417162 -122854282 - AluJb SINE Alu -7 294 246 1035 124 0 62 chr9 19417164 19417342 -122854102 - AluJb SINE Alu -145 167 1 264 122 0 0 chr9 19417419 19417460 -122853984 + (TCC)n Simple_repeat Simple_repeat 3 43 0 438 276 53 0 chr9 19417942 19418094 -122853350 + L1MD2 LINE L1 5612 5771 -2037 646 175 70 70 chr9 19418247 19418447 -122852997 - MLT1H1 LTR MaLR 0 590 356 770 250 39 125 chr9 19418507 19418909 -122852535 - MLT1H1 LTR MaLR -214 376 7 1293 214 18 0 chr9 19419956 19420231 -122851213 + Tigger7 DNA MER2_type 2 281 -2206 890 176 33 0 chr9 19420227 19420409 -122851035 + Tigger7 DNA MER2_type 2300 2487 0 * 456 203 102 17 chr9 19421156 19421274 -122850170 - MLT1H1 LTR MaLR -421 134 7 1251 252 106 7 chr9 19422100 19422525 -122848919 + MLT1C LTR MaLR 1 467 0 2164 133 10 0 chr9 19423947 19424256 -122847188 - AluSx SINE Alu 0 312 1 1095 291 74 25 chr9 19424461 19424946 -122846498 - MLT1J LTR MaLR 0 511 3 213 361 62 8 chr9 19425056 19425186 -122846258 - L2 LINE L2 -2 3270 3134 214 273 0 0 chr9 19425322 19425366 -122846078 + L2 LINE L2 3209 3252 -20 336 278 118 14 chr9 19425609 19425753 -122845691 + MIR SINE MIR 28 186 -76 2220 106 0 7 chr9 19425759 19426051 -122845393 - AluSp SINE Alu -23 290 1 315 290 89 8 chr9 19427676 19427800 -122843644 - L1MC4 LINE L1 -1 8041 7908 21 0 0 0 chr9 19428476 19428497 -122842947 + AT_rich Low_complexity Low_complexity 1 21 0 1736 196 68 26 chr9 19428865 19429294 -122842150 + L1MD2 LINE L1 5906 6352 -7 773 166 0 102 chr9 19429360 19429570 -122841874 - AluSg/x SINE Alu 0 305 115 334 278 113 36 chr9 19430801 19430995 -122840449 - L1ME3A LINE L1 0 6170 5962 611 241 48 63 chr9 19431204 19431519 -122839925 - L1MC5 LINE L1 -758 7203 6894 270 301 48 36 chr9 19431527 19431693 -122839751 - L1MC4 LINE L1 -1197 6845 6678 363 297 120 29 chr9 19431946 19432121 -122839323 - MIR SINE MIR 0 262 72 21 0 0 0 chr9 19432952 19432973 -122838471 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 19435405 19435427 -122836017 + AT_rich Low_complexity Low_complexity 1 22 0 256 346 37 9 chr9 19436226 19436333 -122835111 + L2 LINE L2 2943 3052 -220 22 35 0 0 chr9 19437313 19437342 -122834102 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr9 19437561 19437591 -122833853 + AT_rich Low_complexity Low_complexity 1 30 0 990 114 43 22 chr9 19437592 19437776 -122833668 - L1MA9 LINE L1 0 7272 7085 8813 35 0 26 chr9 19437799 19439695 -122831749 - L1PA4 LINE L1 -3 6152 4287 3051 35 0 0 chr9 19439695 19440062 -122831382 + L1PA4 LINE L1 3926 4292 -1854 * 8922 174 31 52 chr9 19440058 19440927 -122830517 - L1MA9 LINE L1 -173 7099 6213 1630 198 70 6 chr9 19440927 19441270 -122830174 - MLT1A1 LTR MaLR 0 365 1 8922 174 31 52 chr9 19441270 19443373 -122828071 - L1MA9 LINE L1 -1059 6213 4194 281 266 0 0 chr9 19443370 19443434 -122828010 - L1MA9 LINE L1 -3409 3697 3634 * 2502 258 81 38 chr9 19443436 19445974 -122825470 - L1MA9 LINE L1 -3445 3661 5 267 237 105 42 chr9 19445983 19446173 -122825271 - L1MEd LINE L1 -5023 1096 895 1409 215 21 48 chr9 19446193 19446389 -122825055 + MLT1A1 LTR MaLR 4 187 -178 1654 170 77 70 chr9 19446389 19446818 -122824626 - MSTB1 LTR MaLR 0 432 1 1409 215 21 48 chr9 19446818 19446993 -122824451 + MLT1A1 LTR MaLR 187 365 0 390 335 52 18 chr9 19447074 19447346 -122824098 - L1MEd LINE L1 -5312 807 527 2152 113 3 0 chr9 19447995 19448287 -122823157 + AluSg SINE Alu 1 293 -17 351 263 123 9 chr9 19448560 19448674 -122822770 - MER5B DNA MER1_type 0 178 52 2418 81 0 3 chr9 19448723 19449032 -122822412 - AluSc SINE Alu -1 308 1 286 216 0 0 chr9 19449042 19449093 -122822351 + MER5B DNA MER1_type 127 177 -1 228 237 229 8 chr9 19449861 19449979 -122821465 - L1ME4a LINE L1 -2 6119 5976 294 235 145 42 chr9 19450190 19450356 -122821088 - L1ME4a LINE L1 -379 5742 5560 183 367 122 15 chr9 19450510 19450706 -122820738 + MIR SINE MIR 46 262 0 301 301 12 0 chr9 19451357 19451440 -122820004 - MIR3 SINE MIR -17 191 108 200 328 0 16 chr9 19451511 19451575 -122819869 - MIR SINE MIR -57 151 89 24 0 0 0 chr9 19454177 19454201 -122817243 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr9 19454211 19454238 -122817206 + (T)n Simple_repeat Simple_repeat 1 27 0 384 200 215 68 chr9 19454522 19454727 -122816717 - MER106A DNA MER1_type -1 235 1 595 283 154 47 chr9 19454774 19455460 -122815984 - L1ME4a LINE L1 -2 6119 5360 25 0 0 0 chr9 19458064 19458089 -122813355 + AT_rich Low_complexity Low_complexity 1 25 0 325 205 9 77 chr9 19458182 19458398 -122813046 + AluJo SINE Alu 25 289 -13 188 188 424 24 chr9 19458423 19458508 -122812936 - MIR SINE MIR -97 165 47 279 0 0 0 chr9 19459754 19459785 -122811659 + (TG)n Simple_repeat Simple_repeat 2 32 0 693 313 57 8 chr9 19461457 19461703 -122809741 + MIR SINE MIR 5 262 0 23 33 0 0 chr9 19461822 19461852 -122809592 + AT_rich Low_complexity Low_complexity 1 30 0 6070 10 0 0 chr9 19465269 19465954 -122805490 - L1PA2 LINE L1 -2 6153 5469 251 352 34 50 chr9 19466593 19466772 -122804672 - MLT1K LTR MaLR -411 177 2 343 300 63 89 chr9 19467071 19467418 -122804026 - L2 LINE L2 -87 3185 2848 515 269 152 5 chr9 19467973 19468170 -122803274 + MIR SINE MIR 37 262 0 327 247 14 0 chr9 19468295 19468368 -122803076 + MIR SINE MIR 141 214 -48 * 477 325 76 21 chr9 19468360 19468597 -122802847 - MIR SINE MIR -11 251 2 225 234 0 21 chr9 19468705 19468752 -122802692 + MIR SINE MIR 47 92 -170 453 348 49 46 chr9 19470581 19470926 -122800518 - L2 LINE L2 0 3272 2927 307 270 197 24 chr9 19471018 19471226 -122800218 - MIR SINE MIR -14 248 3 1542 207 115 0 chr9 19471713 19472104 -122799340 + MER63B DNA MER1_type 1 436 0 203 304 51 13 chr9 19472134 19472213 -122799231 + L2 LINE L2 3191 3272 0 377 195 0 102 chr9 19472265 19472393 -122799051 + MIR3 SINE MIR 88 202 -6 189 345 0 0 chr9 19473213 19473268 -122798176 + MIR3 SINE MIR 118 172 -36 455 315 82 18 chr9 19474176 19474455 -122796989 - MLT1I LTR MaLR -39 370 74 210 140 20 40 chr9 19474867 19474917 -122796527 + CT-rich Low_complexity Low_complexity 3 51 0 277 259 0 94 chr9 19475095 19475180 -122796264 + L2 LINE L2 3185 3261 -11 26 30 0 0 chr9 19476578 19476611 -122794833 + AT_rich Low_complexity Low_complexity 1 33 0 380 279 97 32 chr9 19477336 19477490 -122793954 - MIR3 SINE MIR -18 190 27 293 297 149 15 chr9 19480688 19480883 -122790561 - MIR SINE MIR -6 256 36 371 332 58 10 chr9 19481171 19481376 -122790068 - MIR SINE MIR -14 248 34 541 279 73 0 chr9 19481394 19481559 -122789885 - MER5B DNA MER1_type 0 178 2 397 291 89 11 chr9 19482627 19482806 -122788638 - MER117 DNA MER1_type -3 194 2 681 292 15 0 chr9 19483654 19483856 -122787588 + MER58C DNA MER1_type 11 215 0 217 294 130 0 chr9 19483894 19483986 -122787458 - MIR SINE MIR 0 262 159 875 263 95 99 chr9 19483986 19484522 -122786922 + MLT1F LTR MaLR 1 534 -8 882 254 57 35 chr9 19484527 19485006 -122786438 + MLT1F-int LTR MaLR 1 601 -770 318 292 193 16 chr9 19485218 19485410 -122786034 + MLT1F-int LTR MaLR 659 884 -487 249 294 7 96 chr9 19485513 19485659 -122785785 + MLT1F-int LTR MaLR 963 1095 -276 597 226 244 78 chr9 19485922 19486192 -122785252 + MLT1F1 LTR MaLR 72 386 -181 875 162 73 17 chr9 19486204 19486383 -122785061 - THE1C LTR MaLR -186 189 1 553 270 62 6 chr9 19486649 19486827 -122784617 + MER5A DNA MER1_type 1 188 -1 214 286 36 36 chr9 19487854 19487938 -122783506 + MIR SINE MIR 20 103 -105 188 184 0 0 chr9 19488467 19488505 -122782939 - L2 LINE L2 -4 3309 3272 189 147 0 0 chr9 19488633 19488667 -122782777 + (TCTCCC)n Simple_repeat Simple_repeat 6 39 0 1048 150 23 6 chr9 19488857 19489030 -122782414 - MER5A DNA MER1_type -8 181 6 12751 212 47 8 chr9 19489924 19494210 -122777234 - L1PA16 LINE L1 -3 6865 2415 6090 32 8 0 chr9 19494205 19494948 -122776496 - L1PA4 LINE L1 -1269 4877 4129 * 7565 25 1 8 chr9 19494949 19496232 -122775212 + L1PA4 LINE L1 4879 6155 0 2526 237 28 43 chr9 19496233 19497112 -122774332 - L1PA16 LINE L1 -4425 2423 1474 351 359 77 41 chr9 19497968 19498138 -122773306 - L1M2 LINE L1 -5902 947 772 1004 365 27 26 chr9 19498138 19498724 -122772720 - L1PA16 LINE L1 -6200 638 52 26 30 0 0 chr9 19498737 19498770 -122772674 + AT_rich Low_complexity Low_complexity 1 33 0 615 199 48 7 chr9 19498912 19499058 -122772386 + L1MA7 LINE L1 6140 6291 0 27 29 0 0 chr9 19500742 19500776 -122770668 + AT_rich Low_complexity Low_complexity 1 34 0 818 287 32 59 chr9 19501143 19501516 -122769928 + L2 LINE L2 2946 3308 -5 442 331 71 52 chr9 19501527 19501835 -122769609 - L2 LINE L2 -4 3268 2955 21 0 0 0 chr9 19505456 19505477 -122765967 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 19506607 19506636 -122764808 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 19507614 19507635 -122763809 + AT_rich Low_complexity Low_complexity 1 21 0 385 295 71 64 chr9 19508027 19508264 -122763180 - MIR SINE MIR -13 249 10 288 363 53 18 chr9 19508764 19508935 -122762509 + MER5B DNA MER1_type 1 177 -1 378 137 82 0 chr9 19509141 19509214 -122762230 - MADE1 DNA Mariner 0 80 2 235 167 21 21 chr9 19509727 19509775 -122761669 - L2 LINE L2 -11 3302 3255 220 367 0 44 chr9 19510427 19510517 -122760927 - MIR SINE MIR -106 102 17 328 329 12 31 chr9 19510663 19510824 -122760620 + MIR3 SINE MIR 15 172 -36 1013 241 151 28 chr9 19511958 19512277 -122759167 - MLT1J LTR MaLR -153 358 1 277 343 76 21 chr9 19512354 19512547 -122758897 - MIR SINE MIR -27 235 33 455 234 203 66 chr9 19512798 19512934 -122758510 - LTR50 LTR ERVL -11 784 668 1130 200 24 5 chr9 19512934 19513144 -122758300 + MER20 DNA MER1_type 2 215 -4 455 234 203 66 chr9 19513144 19513310 -122758134 - LTR50 LTR ERVL -127 668 359 328 312 181 0 chr9 19513480 19513717 -122757727 - L2 LINE L2 -934 2380 2101 961 112 26 164 chr9 19514051 19514319 -122757125 + L1MC3 LINE L1 7548 7778 -7 1705 179 84 48 chr9 19514495 19514937 -122756507 - MLT1C LTR MaLR -9 458 1 663 269 132 64 chr9 19514960 19515281 -122756163 + MLT1L LTR MaLR 162 520 -95 2418 85 0 0 chr9 19515281 19515587 -122755857 - AluY SINE Alu -5 306 1 663 269 132 64 chr9 19515587 19515689 -122755755 + MLT1L LTR MaLR 520 614 -1 2337 79 0 0 chr9 19516684 19516975 -122754469 + AluY SINE Alu 1 291 -20 23 33 0 0 chr9 19517202 19517232 -122754212 + AT_rich Low_complexity Low_complexity 1 30 0 581 310 60 25 chr9 19517866 19518150 -122753294 - L2 LINE L2 -93 3220 2927 253 309 112 13 chr9 19518178 19518330 -122753114 + MIR SINE MIR 32 198 -64 230 288 0 50 chr9 19519361 19519441 -122752003 - L2 LINE L2 0 3313 3238 258 281 0 0 chr9 19519797 19519861 -122751583 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 459 309 25 35 chr9 19520179 19520380 -122751064 - MIR SINE MIR -7 255 57 633 280 86 75 chr9 19523281 19523718 -122747726 + L2 LINE L2 2784 3222 -50 198 231 0 0 chr9 19523760 19523825 -122747619 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 201 315 0 33 chr9 19527060 19527152 -122744292 + MIR SINE MIR 117 205 -57 21 0 0 0 chr9 19528075 19528096 -122743348 + AT_rich Low_complexity Low_complexity 1 21 0 1310 200 0 68 chr9 19528709 19529004 -122742440 + AluJo SINE Alu 2 276 -36 24 32 0 0 chr9 19530429 19530460 -122740984 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr9 19530616 19530650 -122740794 + (T)n Simple_repeat Simple_repeat 1 34 0 1159 269 76 7 chr9 19531051 19531360 -122740084 + MER113 DNA MER1_type? 7 358 -163 2491 70 0 16 chr9 19531360 19531676 -122739768 + AluSx SINE Alu 1 311 -1 1159 269 76 7 chr9 19531676 19531812 -122739632 + MER113 DNA MER1_type? 358 483 -38 3461 36 10 0 chr9 19532391 19532808 -122738636 + L1PA3 LINE L1 5735 6155 0 623 314 87 13 chr9 19532809 19533038 -122738406 + MIR SINE MIR 9 254 -8 803 309 74 13 chr9 19533376 19533754 -122737690 + L3b LINE CR1 1115 1515 -68 1182 218 67 27 chr9 19533882 19534213 -122737231 - MER2 DNA MER2_type 0 344 1 645 327 80 40 chr9 19534367 19534694 -122736750 - L2 LINE L2 -1 3271 2932 877 173 109 12 chr9 19534776 19535024 -122736420 + MER33 DNA MER1_type 31 302 -22 626 255 90 19 chr9 19535026 19535063 -122736381 + MER112 DNA MER1_type 29 62 -198 207 100 0 0 chr9 19535063 19535093 -122736351 + (CATA)n Simple_repeat Simple_repeat 3 32 0 626 255 90 19 chr9 19535093 19535267 -122736177 + MER112 DNA MER1_type 62 255 -5 261 299 267 58 chr9 19535337 19535952 -122735492 - L2 LINE L2 -589 2725 1983 2126 137 0 6 chr9 19540131 19540542 -122730902 - AluSq SINE Alu 0 409 1 183 250 26 9 chr9 19540660 19540776 -122730668 + CT-rich Low_complexity Low_complexity 3 120 0 297 336 143 41 chr9 19541943 19542357 -122729087 - L2 LINE L2 0 3313 2858 1579 306 146 41 chr9 19542459 19543827 -122727617 - L2 LINE L2 -600 2714 1204 2172 73 3 18 chr9 19545052 19545397 -122726047 + AluY SINE Alu 1 341 0 736 307 137 30 chr9 19545475 19546036 -122725408 - L2 LINE L2 -2235 1079 459 218 299 10 62 chr9 19546145 19546242 -122725202 + MIR SINE MIR 19 110 -98 239 264 114 54 chr9 19546322 19546473 -122724971 - MIR SINE MIR -62 146 2 25 31 0 0 chr9 19547392 19547424 -122724020 + AT_rich Low_complexity Low_complexity 1 32 0 1281 145 5 10 chr9 19547989 19548182 -122723262 - AluSq SINE Alu -39 274 83 2464 99 0 0 chr9 19549893 19550205 -122721239 + AluSx SINE Alu 1 312 0 351 154 0 0 chr9 19550306 19550371 -122721073 + CT-rich Low_complexity Low_complexity 1 65 0 1052 312 111 5 chr9 19550395 19550877 -122720567 - L2 LINE L2 -39 3274 2742 843 259 49 0 chr9 19550895 19551100 -122720344 + MIR SINE MIR 39 253 -9 336 234 0 24 chr9 19551106 19551230 -122720214 + (TA)n Simple_repeat Simple_repeat 2 122 0 399 220 0 58 chr9 19551245 19551436 -122720008 + (TA)n Simple_repeat Simple_repeat 1 180 0 1044 283 111 8 chr9 19551476 19551836 -122719608 - L2 LINE L2 -611 2703 2307 22 0 0 0 chr9 19553139 19553161 -122718283 + AT_rich Low_complexity Low_complexity 1 22 0 2880 194 25 8 chr9 19553629 19554725 -122716719 + L1MB1 LINE L1 4709 5827 -341 675 144 0 0 chr9 19554725 19554836 -122716608 + AluSp/q SINE Alu 201 311 -2 380 42 0 0 chr9 19554837 19554885 -122716559 - L1P LINE L1 -2464 3682 3635 3071 65 18 0 chr9 19554885 19555276 -122716168 + L1PA7 LINE L1 5748 6153 -1 1409 153 67 0 chr9 19555278 19555560 -122715884 + L1MB1 LINE L1 5847 6147 -21 3443 151 54 11 chr9 19555730 19556430 -122715014 + L1MB3 LINE L1 5451 6180 -3 351 65 0 0 chr9 19556706 19556752 -122714692 + (TG)n Simple_repeat Simple_repeat 2 47 0 384 335 35 29 chr9 19557196 19557366 -122714078 + MIR SINE MIR 1 171 -91 500 333 58 61 chr9 19557758 19558052 -122713392 - L2 LINE L2 -6 3266 2974 261 180 60 0 chr9 19559869 19559919 -122711525 - MIR SINE MIR -113 149 97 1584 120 0 30 chr9 19560287 19560521 -122710923 - AluSc SINE Alu -82 227 1 391 240 29 10 chr9 19560709 19560813 -122710631 + MER5A DNA MER1_type 4 109 -80 2315 105 0 3 chr9 19561068 19561372 -122710072 - AluSx SINE Alu -2 310 8 747 250 22 0 chr9 19561400 19561580 -122709864 - L1MC5 LINE L1 -1144 6817 6634 484 194 46 19 chr9 19562041 19562149 -122709295 + MER3 DNA MER1_type 1 111 -98 657 227 70 38 chr9 19562298 19562592 -122708852 - L1ME2 LINE L1 -11 6153 5840 * 1897 239 81 59 chr9 19562589 19563489 -122707955 - L1ME2 LINE L1 -10 6223 5306 1345 247 89 6 chr9 19563514 19564377 -122707067 - L1ME2 LINE L1 -1024 5191 4197 399 358 44 21 chr9 19564387 19564725 -122706719 - L1ME2 LINE L1 -6015 381 36 545 424 67 54 chr9 19564784 19564981 -122706463 - HAL1b LINE L1 -796 552 359 252 0 0 0 chr9 19564981 19565009 -122706435 + (TA)n Simple_repeat Simple_repeat 2 29 0 545 424 67 54 chr9 19565009 19565292 -122706152 - HAL1b LINE L1 -989 359 66 2167 83 42 0 chr9 19565303 19565591 -122705853 - AluY SINE Alu -11 300 1 943 146 0 0 chr9 19565953 19566090 -122705354 - AluJb SINE Alu -19 293 157 2134 125 0 10 chr9 19566881 19567193 -122704251 + AluSg SINE Alu 1 309 -1 208 214 0 0 chr9 19569433 19569475 -122701969 - MIR3 SINE MIR -15 193 152 259 278 11 0 chr9 19569601 19569691 -122701753 - MER103 DNA DNA -70 96 6 223 320 152 8 chr9 19569771 19569896 -122701548 - MIR3 SINE MIR -50 158 16 1368 149 0 0 chr9 19570188 19570403 -122701041 + L1PB4 LINE L1 5928 6142 -14 559 303 49 0 chr9 19570729 19570914 -122700530 + MIR3 SINE MIR 15 208 0 1893 169 3 0 chr9 19573862 19574164 -122697280 - AluJb SINE Alu -9 303 1 180 306 28 56 chr9 19577747 19577819 -122693625 - L2 LINE L2 0 3272 3203 464 333 89 22 chr9 19577960 19578275 -122693169 + LTR16C LTR ERVL 156 491 0 384 301 87 40 chr9 19578362 19578535 -122692909 + L2 LINE L2 3125 3305 -8 201 326 47 47 chr9 19578596 19578682 -122692762 - MIR SINE MIR -104 104 19 215 226 16 16 chr9 19579358 19579420 -122692024 - MIR SINE MIR -10 252 191 581 188 56 69 chr9 19579478 19579622 -122691822 - MIR SINE MIR -64 198 57 242 347 158 16 chr9 19579699 19579889 -122691555 - L2 LINE L2 -1235 2079 1863 560 246 0 168 chr9 19581233 19581530 -122689914 - MIR SINE MIR -7 255 9 972 56 0 0 chr9 19582383 19582509 -122688935 - L1PA4 LINE L1 -3 6152 6027 1836 265 110 14 chr9 19582511 19583466 -122687978 + L2 LINE L2 2274 3312 -1 613 255 176 5 chr9 19584634 19584822 -122686622 + MIR SINE MIR 1 220 -42 2017 103 3 36 chr9 19584948 19585249 -122686195 - AluSx SINE Alu -4 308 18 1658 224 88 31 chr9 19585633 19586146 -122685298 - MLT1F LTR MaLR 0 542 1 247 262 48 48 chr9 19587165 19587352 -122684092 - L1ME4a LINE L1 -1 6120 5934 369 216 80 24 chr9 19587508 19587633 -122683811 - L1MB7 LINE L1 -100 6084 5953 386 138 0 0 chr9 19587634 19587699 -122683745 + L1MB7 LINE L1 5884 5948 -226 644 203 73 0 chr9 19587795 19587972 -122683472 + L1M4 LINE L1 5599 5788 -396 1442 183 0 4 chr9 19588472 19588702 -122682742 - AluJb SINE Alu -83 229 1 1069 204 44 11 chr9 19589247 19589517 -122681927 - L1MB7 LINE L1 0 6184 5906 1442 176 68 23 chr9 19589521 19589740 -122681704 - L1MB7 LINE L1 -582 5592 5384 2230 109 0 3 chr9 19589740 19590042 -122681402 - AluSc SINE Alu -7 302 2 1442 176 68 23 chr9 19590042 19590261 -122681183 - L1MB7 LINE L1 -790 5384 5138 2264 130 8 24 chr9 19590723 19591093 -122680351 - THE1B LTR MaLR 0 364 1 1379 187 16 13 chr9 19591093 19591403 -122680041 - L1MB7 LINE L1 -998 5148 4838 272 350 10 10 chr9 19591538 19591638 -122679806 + MIR SINE MIR 8 107 -155 240 250 56 0 chr9 19591743 19591815 -122679629 + MIR SINE MIR 114 189 -73 305 258 75 0 chr9 19591855 19591948 -122679496 - L1ME3A LINE L1 -17 6153 6054 412 18 35 0 chr9 19593141 19593198 -122678246 + (CA)n Simple_repeat Simple_repeat 2 60 0 1241 160 213 4 chr9 19594037 19594281 -122677163 - AluJb SINE Alu -17 295 1 335 369 35 0 chr9 19594978 19595119 -122676325 - MIR3 SINE MIR -23 185 40 224 244 0 0 chr9 19595386 19595431 -122676013 + L3 LINE CR1 1526 1570 -7 195 250 204 68 chr9 19597435 19597567 -122673877 + MIR3 SINE MIR 16 165 -43 607 136 27 0 chr9 19598011 19598121 -122673323 - L1MB4 LINE L1 -66 6114 6002 189 263 88 0 chr9 19599051 19599131 -122672313 - MIR SINE MIR 0 262 176 203 324 0 81 chr9 19599174 19599285 -122672159 - MER5B DNA MER1_type -1 177 76 703 182 25 0 chr9 19601185 19601306 -122670138 + FLAM_A SINE Alu 1 124 -9 263 266 9 35 chr9 19601321 19601434 -122670010 + (TA)n Simple_repeat Simple_repeat 1 110 0 503 312 65 39 chr9 19601517 19601759 -122669685 - MIR SINE MIR -11 251 9 489 283 22 60 chr9 19601825 19602009 -122669435 - MER5B DNA MER1_type -1 177 1 250 343 63 74 chr9 19602088 19602828 -122668616 - L2 LINE L2 -55 3217 2415 494 239 30 60 chr9 19603722 19603889 -122667555 + MIR SINE MIR 50 211 -51 374 333 85 12 chr9 19604628 19604793 -122666651 + MIR3 SINE MIR 31 207 -1 256 348 169 20 chr9 19605718 19605919 -122665525 - L2 LINE L2 0 3272 3042 2721 161 51 13 chr9 19605944 19606477 -122664967 - MER68 LTR ERV1 -9 553 1 283 227 125 11 chr9 19606755 19606843 -122664601 - L2 LINE L2 -20 3252 3155 254 341 77 35 chr9 19607509 19607718 -122663726 + MIR SINE MIR 40 261 -1 279 295 115 0 chr9 19608245 19608367 -122663077 - MIR SINE MIR -125 137 2 1959 118 14 0 chr9 19609862 19610176 -122661268 - AluSq SINE Alu 0 318 1 3397 188 75 30 chr9 19611193 19612318 -122659126 + L1MC3 LINE L1 4911 5306 -840 226 354 157 11 chr9 19612774 19612952 -122658492 + MIR SINE MIR 47 250 -12 396 281 44 37 chr9 19613618 19613753 -122657691 + L2 LINE L2 3178 3313 0 26 30 0 0 chr9 19614244 19614277 -122657167 + AT_rich Low_complexity Low_complexity 1 33 0 188 326 129 8 chr9 19614757 19614889 -122656555 - L2 LINE L2 -4 3268 3121 275 347 21 26 chr9 19614922 19615112 -122656332 - L2 LINE L2 -344 2970 2782 390 216 23 0 chr9 19615176 19615264 -122656180 + MER5A DNA MER1_type 17 106 -83 944 347 111 34 chr9 19615357 19616631 -122654813 - L2 LINE L2 -587 2727 1356 242 284 32 29 chr9 19617039 19617203 -122654241 - L3 LINE CR1 -7 1570 1358 466 314 46 31 chr9 19617681 19617875 -122653569 - MIR SINE MIR -34 228 32 231 304 194 36 chr9 19618085 19618477 -122652967 - L2 LINE L2 -1071 2243 1790 527 327 98 31 chr9 19618504 19618831 -122652613 - L3 LINE CR1 -316 1261 913 394 321 164 13 chr9 19618906 19619065 -122652379 + MIR3 SINE MIR 15 197 -11 320 298 40 32 chr9 19619092 19619216 -122652228 - L2 LINE L2 -1 3271 3147 692 245 130 12 chr9 19619878 19620131 -122651313 - MLT1H1 LTR MaLR 0 555 273 1288 127 75 0 chr9 19621126 19621338 -122650106 - MER30 DNA MER1_type -1 229 2 938 262 76 60 chr9 19621518 19621964 -122649480 - LTR16B LTR ERVL -6 458 6 270 95 0 0 chr9 19622291 19622333 -122649111 + (CA)n Simple_repeat Simple_repeat 1 42 0 1548 195 6 29 chr9 19626320 19626338 -122645106 - AluJo SINE Alu -6 306 289 234 0 0 0 chr9 19626338 19626364 -122645080 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1548 195 6 29 chr9 19626364 19626658 -122644786 - AluJo SINE Alu -23 289 1 195 253 12 48 chr9 19627453 19627536 -122643908 + L3b LINE CR1 1311 1390 -193 916 166 86 140 chr9 19627640 19628104 -122643340 - MLT1E3 LTR MaLR 0 624 67 464 279 107 0 chr9 19628562 19628702 -122642742 - MIR SINE MIR 0 262 108 406 291 119 0 chr9 19628825 19628959 -122642485 + MIR SINE MIR 32 181 -81 7699 34 2 0 chr9 19633789 19635495 -122635949 - L1PA4 LINE L1 0 6155 4454 227 250 193 0 chr9 19635971 19636059 -122635385 - MIR SINE MIR -20 242 138 355 248 43 8 chr9 19636614 19636731 -122634713 + L1MC4a LINE L1 4459 4579 -1567 326 279 149 0 chr9 19636732 19636886 -122634558 + L1MC4a LINE L1 4668 4844 -1302 273 263 54 73 chr9 19637030 19637235 -122634209 + L1MC4a LINE L1 5083 5283 -863 * 3244 69 5 0 chr9 19637233 19637665 -122633779 - L1P LINE L1 -876 5270 4837 2152 68 10 0 chr9 19637665 19637957 -122633487 + L1PA7 LINE L1 5858 6154 0 871 288 77 17 chr9 19637974 19638490 -122632954 + L1MC4a LINE L1 5295 5808 -354 317 312 29 65 chr9 19640805 19640943 -122630501 + MIR3 SINE MIR 64 196 -12 234 0 0 0 chr9 19641676 19641702 -122629742 + (A)n Simple_repeat Simple_repeat 1 26 0 2321 115 0 0 chr9 19641859 19642171 -122629273 - AluSx SINE Alu 0 312 1 236 260 177 10 chr9 19642303 19642399 -122629045 + MIR SINE MIR 20 131 -131 2167 124 38 27 chr9 19643417 19643788 -122627656 - THE1C LTR MaLR 0 375 1 564 330 28 14 chr9 19646025 19646243 -122625201 - MIR SINE MIR -37 225 5 21 57 0 0 chr9 19647174 19647209 -122624235 + AT_rich Low_complexity Low_complexity 1 35 0 768 182 0 15 chr9 19647659 19647791 -122623653 - FLAM_C SINE Alu -3 130 1 24 53 0 0 chr9 19648553 19648591 -122622853 + AT_rich Low_complexity Low_complexity 1 38 0 7840 17 0 0 chr9 19648669 19650167 -122621277 - L1PA3 LINE L1 0 6155 4658 5012 25 0 0 chr9 19650169 19650757 -122620687 + L1PA3 LINE L1 4060 4647 -1499 728 275 94 43 chr9 19650820 19651277 -122620167 - L2 LINE L2 -76 3237 2776 348 239 179 16 chr9 19652410 19652594 -122618850 + MIR SINE MIR 20 233 -29 374 240 96 0 chr9 19652814 19652918 -122618526 - MIR SINE MIR 0 262 149 220 274 0 16 chr9 19654408 19654470 -122616974 + GA-rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr9 19658362 19658385 -122613059 + AT_rich Low_complexity Low_complexity 1 23 0 319 279 127 19 chr9 19658960 19659118 -122612326 + MIR SINE MIR 75 249 -13 217 222 0 0 chr9 19660163 19660208 -122611236 + CT-rich Low_complexity Low_complexity 4 48 0 330 67 0 0 chr9 19661061 19661106 -122610338 + (TG)n Simple_repeat Simple_repeat 2 46 0 1075 224 56 32 chr9 19662378 19662864 -122608580 - MLT1E LTR MaLR 0 593 1 317 221 0 0 chr9 19662896 19662964 -122608480 + Tigger4(Zombi) DNA MER2_type 2664 2731 0 2057 188 34 1 chr9 19664223 19664849 -122606595 - L1MC/D LINE L1 -744 5402 4849 252 297 58 58 chr9 19664916 19665054 -122606390 + MIR SINE MIR 29 166 -96 462 344 8 0 chr9 19665071 19665202 -122606242 + MIR SINE MIR 1 132 -130 339 158 118 13 chr9 19665559 19665635 -122605809 - L1MB7 LINE L1 -40 6144 6061 8087 34 0 0 chr9 19665639 19667383 -122604061 - L1PA3 LINE L1 -2 6153 4411 2757 20 0 0 chr9 19667383 19667687 -122603757 - AluYa5 SINE Alu -7 304 1 17469 45 58 3 chr9 19667687 19669926 -122601518 - L1PA3 LINE L1 -3783 2363 1 808 264 146 65 chr9 19670056 19670529 -122600915 + MLT1J LTR MaLR 1 511 0 207 307 79 70 chr9 19671176 19671290 -122600154 + L2 LINE L2 3154 3268 -4 180 311 236 14 chr9 19671337 19671485 -122599959 + MIR SINE MIR 81 261 -1 354 276 14 14 chr9 19671496 19671641 -122599803 + (TTA)n Simple_repeat Simple_repeat 1 145 0 207 0 0 0 chr9 19671905 19671928 -122599516 + (T)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr9 19672050 19672079 -122599365 + (A)n Simple_repeat Simple_repeat 1 29 0 2241 121 0 3 chr9 19672875 19673182 -122598262 + AluSq SINE Alu 1 306 -7 180 273 0 0 chr9 19673199 19673265 -122598179 + GA-rich Low_complexity Low_complexity 1 66 0 363 262 43 27 chr9 19673286 19673456 -122597988 - MIR SINE MIR -3 259 38 454 302 98 51 chr9 19673939 19674174 -122597270 + MIR SINE MIR 17 262 0 652 270 56 0 chr9 19674543 19674721 -122596723 - MIR SINE MIR -36 226 39 235 303 40 13 chr9 19674912 19674988 -122596456 + MIR SINE MIR 107 184 -78 23 33 0 0 chr9 19676215 19676245 -122595199 + AT_rich Low_complexity Low_complexity 1 30 0 203 115 131 0 chr9 19676258 19676319 -122595125 + (TTAA)n Simple_repeat Simple_repeat 1 69 0 294 119 37 30 chr9 19676390 19676524 -122594920 + (TA)n Simple_repeat Simple_repeat 2 136 0 511 236 57 0 chr9 19676615 19676738 -122594706 - LTR37A LTR ERV1 -251 175 46 360 286 127 24 chr9 19676814 19677027 -122594417 - L2 LINE L2 -15 3298 3064 197 347 14 0 chr9 19678219 19678291 -122593153 - L2 LINE L2 -344 2969 2897 1964 102 31 20 chr9 19679738 19680032 -122591412 - AluSx SINE Alu -15 297 1 21 36 0 0 chr9 19680217 19680245 -122591199 + AT_rich Low_complexity Low_complexity 1 28 0 4166 242 75 16 chr9 19680332 19681740 -122589704 + Zaphod DNA AcHobo 2532 4022 -9 189 107 0 0 chr9 19682643 19682671 -122588773 + (T)n Simple_repeat Simple_repeat 1 28 0 569 256 95 18 chr9 19682818 19682986 -122588458 + MIR SINE MIR 1 181 -81 223 280 147 21 chr9 19682990 19683133 -122588311 - L2 LINE L2 -176 3137 2977 264 184 233 68 chr9 19683216 19683319 -122588125 - MIR SINE MIR -50 212 93 449 282 60 6 chr9 19684507 19684981 -122586463 - L1M LINE L1 -745 5419 4918 344 282 83 68 chr9 19685195 19685337 -122586107 - L1M4 LINE L1 -1501 4714 4576 1862 140 41 0 chr9 19685337 19685651 -122585793 - AluSx SINE Alu 0 325 1 344 282 83 68 chr9 19685651 19686022 -122585422 - L1M4 LINE L1 -1639 4576 4192 562 285 79 70 chr9 19686149 19686656 -122584788 - L1MEc LINE L1 -3546 2669 2198 1792 180 0 0 chr9 19686774 19687068 -122584376 - AluJb SINE Alu -18 294 1 427 302 54 15 chr9 19687284 19687489 -122583955 - L1MEc LINE L1 -4865 1340 1128 378 226 163 0 chr9 19687531 19687721 -122583723 - L1MDa LINE L1 -3106 3023 2803 328 287 56 46 chr9 19687741 19688239 -122583205 - L1MDa LINE L1 -3461 2668 2166 21 0 0 0 chr9 19688350 19688371 -122583073 + AT_rich Low_complexity Low_complexity 1 21 0 205 205 0 0 chr9 19688636 19688675 -122582769 + T-rich Low_complexity Low_complexity 1 39 0 305 328 75 11 chr9 19688775 19689043 -122582401 - L1MDa LINE L1 -4602 1527 1243 608 277 107 64 chr9 19689067 19689147 -122582297 - L1MDa LINE L1 -4886 1233 1158 1118 211 0 4 chr9 19689147 19689384 -122582060 + MER46A DNA MER2_type 1 236 0 608 277 107 64 chr9 19689384 19689959 -122581485 - L1MDa LINE L1 -4961 1158 550 1178 197 56 85 chr9 19690135 19690510 -122580934 - MLT1A1 LTR MaLR -1 364 1 695 200 7 0 chr9 19690510 19690645 -122580799 - MLT1A1-int LTR MaLR 0 1735 1600 774 220 83 49 chr9 19692759 19693023 -122578421 - ORSL DNA AcHobo -2 273 1 1695 179 4 0 chr9 19694477 19694745 -122576699 - AluJo SINE Alu -32 280 12 706 346 88 26 chr9 19695200 19695700 -122575744 + L3 LINE CR1 1046 1576 -1 2156 118 0 3 chr9 19695736 19696033 -122575411 - AluSq SINE Alu -17 296 1 211 367 75 37 chr9 19696033 19696221 -122575223 - L2 LINE L2 -8 3264 3070 268 336 77 34 chr9 19696358 19696566 -122574878 - L2 LINE L2 -222 3050 2834 25 0 0 0 chr9 19696770 19696795 -122574649 + AT_rich Low_complexity Low_complexity 1 25 0 3223 255 139 23 chr9 19697202 19698627 -122572817 + L2 LINE L2 1723 3311 -2 22 0 0 0 chr9 19698909 19698931 -122572513 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 19699267 19699288 -122572156 + AT_rich Low_complexity Low_complexity 1 21 0 347 345 28 14 chr9 19699519 19699661 -122571783 - L2 LINE L2 -4 3268 3125 582 285 108 81 chr9 19699947 19700428 -122571016 - L2 LINE L2 -561 2753 2260 195 341 146 39 chr9 19700437 19700642 -122570802 - MIR SINE MIR -6 256 30 2564 222 14 0 chr9 19700917 19701488 -122569956 - L1MC3 LINE L1 -2 7783 7205 257 237 0 79 chr9 19701666 19701742 -122569702 - MIR SINE MIR -114 148 79 1839 102 15 19 chr9 19702145 19702411 -122569033 - AluSg SINE Alu -45 265 1 248 202 169 34 chr9 19704532 19704621 -122566823 + MIR SINE MIR 99 199 -63 833 190 11 0 chr9 19704740 19704919 -122566525 - L1MA7 LINE L1 -10 6281 6101 11618 117 30 68 chr9 19704920 19705494 -122565950 - Tigger1 DNA MER2_type -3 2415 1821 1972 159 0 28 chr9 19705494 19705815 -122565629 + AluSx SINE Alu 1 312 0 11618 117 30 68 chr9 19705815 19707342 -122564102 - Tigger1 DNA MER2_type -597 1821 392 7287 201 38 4 chr9 19707647 19709314 -122562130 + L1 LINE L1 3217 4939 -1207 336 48 0 0 chr9 19710125 19710167 -122561277 + (TG)n Simple_repeat Simple_repeat 1 42 0 288 308 103 0 chr9 19710176 19710283 -122561161 + MER117 DNA MER1_type 53 170 -27 618 296 64 15 chr9 19711630 19711833 -122559611 + MIR SINE MIR 2 214 -48 2269 36 43 4 chr9 19711846 19712148 -122559296 - AluY SINE Alu 0 313 1 286 300 42 8 chr9 19712211 19712331 -122559113 + MIR SINE MIR 124 247 -15 234 91 0 0 chr9 19713509 19713542 -122557902 + (A)n Simple_repeat Simple_repeat 1 33 0 460 267 57 52 chr9 19714473 19714840 -122556604 - L1MC5 LINE L1 -280 7681 7313 254 263 82 67 chr9 19714826 19715020 -122556424 - L1MC4a LINE L1 -393 7415 7219 * 2228 102 0 3 chr9 19715252 19715545 -122555899 + AluSc SINE Alu 1 292 -17 237 368 70 0 chr9 19716038 19716152 -122555292 + MER91A DNA MER1_type 40 161 -35 216 284 27 0 chr9 19716553 19716627 -122554817 + CT-rich Low_complexity Low_complexity 1 76 0 55 40 0 0 chr9 19719623 19719699 -122551745 + AT_rich Low_complexity Low_complexity 1 76 0 282 298 76 57 chr9 19720039 19720117 -122551327 - L1MC4a LINE L1 -2287 5521 5446 2009 135 39 9 chr9 19720117 19720451 -122550993 - MER2 DNA MER2_type 0 344 1 282 298 76 57 chr9 19720451 19720634 -122550810 - L1MC4a LINE L1 -2362 5446 5255 538 327 41 61 chr9 19720791 19721322 -122550122 - L1MC4a LINE L1 -1103 5043 4532 400 353 91 29 chr9 19721322 19721807 -122549637 - HAL1 LINE L1 -1009 1498 984 1209 229 34 48 chr9 19722701 19723054 -122548390 - MLT1B LTR MaLR -42 348 1 192 293 132 70 chr9 19723083 19723424 -122548020 - L2 LINE L2 -1055 2259 1898 215 242 177 0 chr9 19723489 19723551 -122547893 - L2 LINE L2 -18 3254 3182 764 192 110 35 chr9 19724164 19724419 -122547025 + MER102b DNA MER1_type 45 318 -23 216 97 0 0 chr9 19725618 19725649 -122545795 + (A)n Simple_repeat Simple_repeat 1 31 0 180 245 20 0 chr9 19727706 19727755 -122543689 + L2 LINE L2 2713 2762 -552 213 313 45 89 chr9 19727850 19728208 -122543236 + L2 LINE L2 2882 3223 -90 225 244 0 0 chr9 19728870 19728911 -122542533 + (TG)n Simple_repeat Simple_repeat 2 42 0 446 340 25 15 chr9 19728952 19729155 -122542289 + MIR SINE MIR 58 262 0 307 263 0 0 chr9 19730172 19730258 -122541186 + Charlie5 DNA MER1_type 1 75 -2537 678 304 89 40 chr9 19730669 19731041 -122540403 + MLT1J2 LTR MaLR 59 448 -2 7481 26 0 0 chr9 19731102 19732080 -122539364 - L1PA5 LINE L1 -11 6143 5160 3065 61 0 0 chr9 19732080 19732473 -122538971 + L1P LINE L1 4705 5097 -1049 1851 155 0 4 chr9 19733012 19733290 -122538154 - AluSx SINE Alu -35 277 1 21 0 0 0 chr9 19734535 19734556 -122536888 + AT_rich Low_complexity Low_complexity 1 21 0 1684 231 62 38 chr9 19734675 19735541 -122535903 - L1ME1 LINE L1 -289 5877 4985 2363 164 19 19 chr9 19735545 19735971 -122535473 - MSTB LTR MaLR 0 426 1 2749 251 31 33 chr9 19735990 19738166 -122533278 - L1 LINE L1 -3202 4363 2264 370 206 0 15 chr9 19738175 19738243 -122533201 + MER8 DNA MER2_type 1 67 -172 180 200 0 0 chr9 19738364 19738414 -122533030 + (CAGG)n Simple_repeat Simple_repeat 1 50 0 210 191 0 0 chr9 19738419 19738466 -122532978 + A-rich Low_complexity Low_complexity 1 47 0 241 386 53 0 chr9 19738692 19738806 -122532638 + MIR3 SINE MIR 83 202 -6 628 190 9 134 chr9 19738826 19738895 -122532549 - MLT2B1 LTR ERVL 0 520 444 489 84 0 0 chr9 19738895 19738966 -122532478 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 628 190 9 134 chr9 19738966 19739112 -122532332 - MLT2B1 LTR ERVL -76 444 332 483 144 33 0 chr9 19739109 19739199 -122532245 - MLT2B1 LTR ERVL -424 96 4 * 2409 81 0 0 chr9 19740543 19740852 -122530592 - AluY SINE Alu 0 311 3 336 267 67 0 chr9 19741165 19741240 -122530204 - L2 LINE L2 0 3313 3234 456 19 0 0 chr9 19741471 19741524 -122529920 + (TC)n Simple_repeat Simple_repeat 1 53 0 288 0 0 0 chr9 19741523 19741555 -122529889 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 1914 163 38 36 chr9 19742190 19742746 -122528698 + MLT2A2 LTR ERVL 1 554 0 1407 132 0 4 chr9 19742861 19743089 -122528355 - L1PA16 LINE L1 -332 5834 5608 472 259 58 58 chr9 19743848 19744157 -122527287 - L1M4 LINE L1 -1605 4541 4233 262 261 0 0 chr9 19744150 19744215 -122527229 - L1M4 LINE L1 -3112 3034 2970 * 1933 164 0 26 chr9 19744215 19744411 -122527033 - AluJo SINE Alu -10 302 115 3928 68 12 124 chr9 19744411 19745098 -122526346 - LTR66 LTR ERVL 0 610 1 1933 164 0 26 chr9 19745098 19745211 -122526233 - AluJo SINE Alu -197 115 1 272 155 179 0 chr9 19745212 19745296 -122526148 - L1M4 LINE L1 -3169 2977 2879 1817 195 112 6 chr9 19745296 19745762 -122525682 - L1PA16 LINE L1 -1 6165 5651 1572 222 76 28 chr9 19745745 19745957 -122525487 - L1M4 LINE L1 -3238 2908 2708 * 2270 103 3 0 chr9 19745957 19746258 -122525186 + AluSp SINE Alu 1 302 -11 1572 222 76 28 chr9 19746258 19746662 -122524782 - L1M4 LINE L1 -3438 2708 2262 1698 199 0 10 chr9 19746666 19746973 -122524471 + AluJb SINE Alu 3 306 -6 2484 76 0 19 chr9 19746973 19747289 -122524155 + AluY SINE Alu 1 310 -1 2244 109 6 6 chr9 19747304 19747617 -122523827 + AluSp SINE Alu 1 313 0 300 318 12 0 chr9 19747908 19747993 -122523451 - MIR SINE MIR -176 86 1 771 269 81 40 chr9 19748028 19748549 -122522895 - L1ME4a LINE L1 -69 6052 5511 393 262 93 52 chr9 19748602 19748774 -122522670 - MIR SINE MIR 0 262 84 23 54 0 0 chr9 19748936 19748973 -122522471 + AT_rich Low_complexity Low_complexity 1 37 0 752 216 50 37 chr9 19749180 19749398 -122522046 - L1MB8 LINE L1 -5 6173 5953 1502 149 65 4 chr9 19750825 19751073 -122520371 - AluJb SINE Alu -15 297 35 591 314 155 35 chr9 19751092 19751854 -122519590 - L2 LINE L2 -1007 2307 1455 327 132 15 15 chr9 19752112 19752180 -122519264 - L1MB4 LINE L1 -2 6178 6111 3016 176 97 34 chr9 19752198 19753026 -122518418 - L1MB4 LINE L1 -2 6178 5299 22 103 0 0 chr9 19753088 19753166 -122518278 + AT_rich Low_complexity Low_complexity 1 78 0 2615 43 0 3 chr9 19755692 19755996 -122515448 + AluY SINE Alu 7 309 -2 357 333 157 7 chr9 19756141 19756288 -122515156 - MIR SINE MIR -81 181 13 648 262 0 37 chr9 19857232 19857419 -122414025 - MIR SINE MIR -70 192 13 2331 81 19 23 chr9 19857420 19857729 -122413715 - AluSx SINE Alu -4 308 1 226 365 100 6 chr9 19857868 19858038 -122413406 - MIR SINE MIR 0 262 77 229 319 32 11 chr9 19858653 19858747 -122412697 + MIR SINE MIR 20 115 -147 407 277 109 0 chr9 19858808 19858927 -122412517 - MIR SINE MIR -78 184 53 233 91 0 0 chr9 19859102 19859135 -122412309 - MIR SINE MIR -113 149 117 1805 150 46 0 chr9 19859293 19859573 -122411871 + AluJb SINE Alu 1 293 -19 2420 83 3 0 chr9 19859573 19859873 -122411571 + AluSp SINE Alu 1 301 -12 770 230 79 82 chr9 19859962 19860253 -122411191 + AluYa5 SINE Alu 4 293 -8 549 271 36 85 chr9 19860330 19860611 -122410833 - L2 LINE L2 0 3272 3006 193 276 88 109 chr9 19860683 19860944 -122410500 + L2 LINE L2 2851 3105 -167 2014 108 42 11 chr9 19860944 19861230 -122410214 - AluSx SINE Alu -17 295 1 193 276 88 109 chr9 19861230 19861298 -122410146 + L2 LINE L2 3105 3173 -99 560 247 251 4 chr9 19861912 19862155 -122409289 + MLT1H LTR MaLR 247 549 0 893 145 0 0 chr9 19862204 19862342 -122409102 + FRAM SINE Alu 38 175 -1 264 207 43 128 chr9 19862346 19862415 -122409029 + L1MC4a LINE L1 5814 5887 -1921 2343 85 7 10 chr9 19862415 19862720 -122408724 + AluSg SINE Alu 1 304 -6 264 207 43 128 chr9 19862720 19862740 -122408704 + L1MC4a LINE L1 5887 5907 -1901 2258 101 3 13 chr9 19862740 19863047 -122408397 + AluSx SINE Alu 1 304 -8 264 207 43 128 chr9 19863047 19863120 -122408324 + L1MC4a LINE L1 5907 5963 -1845 2579 62 0 0 chr9 19863299 19863603 -122407841 - AluY SINE Alu -7 304 1 573 283 7 0 chr9 19864573 19864725 -122406719 + MER45A DNA AcHobo 6 158 -20 342 252 272 0 chr9 19864880 19865027 -122406417 + MIR SINE MIR 5 191 -71 359 236 42 62 chr9 19865322 19865466 -122405978 - L2 LINE L2 -57 3256 3116 257 254 7 99 chr9 19865593 19865735 -122405709 + MIR SINE MIR 60 188 -74 234 191 0 0 chr9 19866031 19866078 -122405366 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 213 39 0 0 chr9 19866082 19866108 -122405336 + (A)n Simple_repeat Simple_repeat 1 26 0 910 127 8 15 chr9 19866131 19866265 -122405179 + AluSq/x SINE Alu 1 133 -180 5693 153 33 11 chr9 19866280 19867463 -122403981 + L1MC2 LINE L1 5133 6343 -1 2272 96 7 7 chr9 19867511 19867812 -122403632 + AluSp SINE Alu 1 301 -12 1268 124 31 0 chr9 19868317 19868542 -122402902 - L1 LINE L1 -1657 4489 4258 280 281 31 10 chr9 19868673 19868773 -122402671 + MIR SINE MIR 59 161 -47 263 234 13 13 chr9 19868856 19868933 -122402511 - MIR SINE MIR -12 250 174 557 213 0 0 chr9 19868937 19869031 -122402413 - MER81 DNA DNA -1 113 20 318 167 91 0 chr9 19869044 19869110 -122402334 - MIR SINE MIR -111 151 80 354 306 62 14 chr9 19869702 19869846 -122401598 - MIR SINE MIR -110 152 2 217 284 122 34 chr9 19869853 19870001 -122401443 + MIR SINE MIR 76 236 -26 552 284 111 0 chr9 19870118 19870308 -122401136 - MIR SINE MIR -13 249 39 203 299 110 31 chr9 19870550 19870677 -122400767 - L2 LINE L2 -223 3090 2954 250 270 44 88 chr9 19870713 19870939 -122400505 - L2 LINE L2 -68 3204 2989 766 274 237 16 chr9 19872612 19873222 -122398222 - L2 LINE L2 -31 3282 2524 255 337 0 0 chr9 19873468 19873554 -122397890 - MIR SINE MIR -10 252 167 1961 166 63 44 chr9 19873683 19873834 -122397610 + L1MD2 LINE L1 5795 5942 -417 1936 137 7 14 chr9 19873834 19874152 -122397292 - AluSx SINE Alu 0 316 1 1961 166 63 44 chr9 19874152 19874344 -122397100 + L1MD2 LINE L1 5942 6129 -230 234 0 0 0 chr9 19874344 19874370 -122397074 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 261 0 0 0 chr9 19874369 19874398 -122397046 + (CA)n Simple_repeat Simple_repeat 1 29 0 1961 166 63 44 chr9 19874370 19874527 -122396917 + L1MD2 LINE L1 6129 6278 -81 603 116 26 71 chr9 19874527 19874682 -122396762 - MLT2B1 LTR ERVL 0 520 373 2296 104 0 0 chr9 19875220 19875509 -122395935 + AluSq SINE Alu 1 289 -24 29119 144 43 42 chr9 19875509 19879409 -122392035 - ERVL LTR ERVL -435 5329 1436 1468 184 17 109 chr9 19879409 19879811 -122391633 - MLT1A1 LTR MaLR 0 365 1 29119 144 43 42 chr9 19879811 19879897 -122391547 - ERVL LTR ERVL -4328 1436 1352 2172 128 6 13 chr9 19879897 19880209 -122391235 - AluSx SINE Alu -2 310 1 29119 144 43 42 chr9 19880209 19880231 -122391213 - ERVL LTR ERVL -4412 1352 1332 2463 99 0 3 chr9 19880231 19880543 -122390901 - AluSx SINE Alu -1 311 1 231 36 0 0 chr9 19880545 19880573 -122390871 + (TA)n Simple_repeat Simple_repeat 2 29 0 2160 70 38 28 chr9 19880573 19880860 -122390584 - AluY SINE Alu -21 290 1 300 116 130 0 chr9 19880860 19880929 -122390515 + Charlie5 DNA MER1_type 2471 2548 -64 2085 94 0 15 chr9 19880929 19881196 -122390248 - AluSq SINE Alu -50 263 1 29119 144 43 42 chr9 19881196 19882408 -122389036 - ERVL LTR ERVL -4431 1333 25 2036 59 0 0 chr9 19882409 19882646 -122388798 + AluY SINE Alu 1 237 -74 26 0 0 0 chr9 19882701 19882727 -122388717 + AT_rich Low_complexity Low_complexity 1 26 0 328 306 0 19 chr9 19882828 19882936 -122388508 - MIR SINE MIR -70 138 33 2241 109 0 0 chr9 19882940 19883254 -122388190 - AluSx SINE Alu 0 314 1 189 0 0 0 chr9 19883254 19883275 -122388169 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 570 128 0 0 chr9 19883285 19883363 -122388081 - FLAM_A SINE Alu -32 110 33 1661 179 133 96 chr9 19883821 19884560 -122386884 - L1MC5 LINE L1 -30 7931 7166 1038 172 6 0 chr9 19884562 19884725 -122386719 - AluJb SINE Alu -18 294 131 1295 186 55 133 chr9 19884725 19884954 -122386490 - L1MC5 LINE L1 -793 7168 6923 1779 134 34 41 chr9 19884954 19885245 -122386199 + AluJb SINE Alu 1 289 -23 1295 186 55 133 chr9 19885245 19885616 -122385828 - L1MC5 LINE L1 -1038 6923 6615 2606 143 66 75 chr9 19885638 19886275 -122385169 + L1MC2 LINE L1 5714 6344 0 229 254 0 15 chr9 19886271 19886338 -122385106 - L1MC4a LINE L1 -1213 6595 6530 * 1694 170 32 66 chr9 19886453 19886618 -122384826 - MLT1A1 LTR MaLR 0 365 196 1975 151 0 19 chr9 19886618 19886935 -122384509 + AluSx SINE Alu 1 311 -1 1694 170 32 66 chr9 19886935 19887146 -122384298 - MLT1A1 LTR MaLR -169 196 2 488 291 81 61 chr9 19887184 19887479 -122383965 - L1MC4a LINE L1 -1445 6363 6063 201 201 97 142 chr9 19887720 19887759 -122383685 - MIR SINE MIR -26 236 197 2126 139 0 0 chr9 19887759 19888060 -122383384 - AluSx SINE Alu -11 301 1 201 201 97 142 chr9 19888060 19888154 -122383290 - MIR SINE MIR -65 197 109 337 303 76 0 chr9 19888185 19888304 -122383140 - L2 LINE L2 0 3313 3186 292 204 51 10 chr9 19888559 19888657 -122382787 - L1ME4a LINE L1 -12 6109 6008 2141 129 3 16 chr9 19888660 19888688 -122382756 - AluSx SINE Alu -4 308 281 190 0 0 0 chr9 19888688 19888709 -122382735 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2141 129 3 16 chr9 19888709 19888990 -122382454 - AluSx SINE Alu -31 281 3 415 290 172 5 chr9 19889466 19889687 -122381757 + MIR SINE MIR 5 262 0 431 309 0 43 chr9 19890012 19890088 -122381356 + MIR SINE MIR 2 69 -193 1849 144 0 24 chr9 19890088 19890380 -122381064 - AluJb SINE Alu -22 290 6 431 309 0 43 chr9 19890380 19890465 -122380979 + MIR SINE MIR 69 156 -106 871 286 133 10 chr9 19890576 19890967 -122380477 + MLT1K LTR MaLR 148 586 -2 265 274 0 43 chr9 19890968 19891085 -122380359 + MIR SINE MIR 148 259 -3 551 302 159 64 chr9 19891094 19891162 -122380282 - L1ME4a LINE L1 -20 6101 6041 1859 151 47 27 chr9 19891162 19891461 -122379983 - AluJb SINE Alu -7 305 1 551 302 159 64 chr9 19891461 19891771 -122379673 - L1ME4a LINE L1 -80 6041 5762 234 0 0 0 chr9 19891771 19891797 -122379647 + (TA)n Simple_repeat Simple_repeat 1 26 0 1930 163 3 3 chr9 19891798 19892092 -122379352 - AluJo SINE Alu -10 302 9 551 302 159 64 chr9 19892092 19892164 -122379280 - L1ME4a LINE L1 -358 5763 5605 295 286 0 0 chr9 19892685 19892755 -122378689 + L1M4 LINE L1 4285 4354 -1792 258 278 118 42 chr9 19893458 19893602 -122377842 - MIR3 SINE MIR -37 171 17 279 318 63 10 chr9 19894181 19894350 -122377094 - MIR SINE MIR -20 242 59 300 269 11 32 chr9 19894531 19894624 -122376820 + MIR SINE MIR 84 174 -88 230 281 0 0 chr9 19894651 19894708 -122376736 + (TTA)n Simple_repeat Simple_repeat 2 58 0 191 351 0 27 chr9 19895278 19895352 -122376092 + L2 LINE L2 2686 2757 -557 181 366 204 5 chr9 19895372 19895563 -122375881 - MIR SINE MIR -8 254 26 277 308 35 35 chr9 19895840 19896009 -122375435 + L2 LINE L2 1681 1849 -1465 200 225 0 0 chr9 19896372 19896412 -122375032 + CT-rich Low_complexity Low_complexity 1 40 0 183 326 158 10 chr9 19896500 19896696 -122374748 + L2 LINE L2 2625 2849 -465 290 290 54 120 chr9 19896722 19896805 -122374639 + L2 LINE L2 2853 2940 -332 2243 128 3 0 chr9 19896805 19897109 -122374335 - AluSx SINE Alu -7 305 1 290 290 54 120 chr9 19897109 19897466 -122373978 + L2 LINE L2 2940 3264 -8 2393 110 0 0 chr9 19897488 19897789 -122373655 + AluSx SINE Alu 1 301 -11 281 173 120 0 chr9 19898820 19898895 -122372549 + MLT1K LTR MaLR 501 584 -4 422 283 145 31 chr9 19899680 19899716 -122371728 - MIR SINE MIR -18 244 213 2196 116 6 6 chr9 19899716 19900027 -122371417 - AluSx SINE Alu -1 311 1 422 283 145 31 chr9 19900027 19900149 -122371295 - MIR SINE MIR -49 213 68 1907 162 0 7 chr9 19900727 19901024 -122370420 + AluSx SINE Alu 1 295 -17 2353 109 11 16 chr9 19901043 19901409 -122370035 + THE1B LTR MaLR 1 364 0 573 88 0 0 chr9 19901745 19901825 -122369619 + (TA)n Simple_repeat Simple_repeat 1 80 0 428 294 56 56 chr9 19901834 19902086 -122369358 - L1M4 LINE L1 -3663 2483 2232 1175 185 4 53 chr9 19902345 19902608 -122368836 - AluJo SINE Alu 0 312 76 756 147 0 0 chr9 19902635 19902751 -122368693 - FLAM_C SINE Alu -17 116 1 304 240 36 86 chr9 19902773 19902914 -122368530 - L1ME3 LINE L1 -200 5953 5820 478 123 0 0 chr9 19902979 19903052 -122368392 - AluS SINE Alu -14 296 224 1488 294 74 26 chr9 19903059 19903538 -122367906 - L1ME3 LINE L1 -1158 4971 4516 2256 112 3 0 chr9 19903538 19903833 -122367611 - AluSq SINE Alu -12 301 6 1488 294 74 26 chr9 19903833 19904251 -122367193 - L1ME3 LINE L1 -1613 4516 4016 2511 71 3 7 chr9 19904251 19904561 -122366883 - AluY SINE Alu -2 309 1 1488 294 74 26 chr9 19904561 19904693 -122366751 - L1ME3 LINE L1 -2113 4016 3892 203 211 28 28 chr9 19904750 19904821 -122366623 + (TATAA)n Simple_repeat Simple_repeat 4 74 0 555 290 105 52 chr9 19904837 19905097 -122366347 - L1ME3 LINE L1 -2275 3854 3609 2383 64 42 0 chr9 19905097 19905380 -122366064 + AluY SINE Alu 1 295 -16 555 290 105 52 chr9 19905380 19905432 -122366012 - L1ME3 LINE L1 -2520 3609 3561 189 0 0 0 chr9 19905432 19905453 -122365991 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2026 161 0 0 chr9 19905459 19905758 -122365686 - AluSx SINE Alu -13 299 1 555 290 105 52 chr9 19905758 19905972 -122365472 - L1ME3 LINE L1 -2572 3557 3292 1687 150 79 0 chr9 19905983 19906250 -122365194 + AluSq SINE Alu 9 296 -17 358 304 30 22 chr9 19906261 19906396 -122365048 - L1ME3 LINE L1 -3274 2855 2720 997 107 0 0 chr9 19906411 19906542 -122364902 - AluSg SINE Alu -179 131 1 627 317 57 24 chr9 19906555 19907171 -122364273 - L1ME3 LINE L1 -3401 2728 2093 1415 201 70 7 chr9 19907262 19907546 -122363898 + AluJo SINE Alu 7 308 -4 991 114 6 6 chr9 19907546 19907713 -122363731 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 371 310 138 18 chr9 19908054 19908260 -122363184 - L1ME3 LINE L1 -4440 1689 1379 1904 153 28 0 chr9 19908265 19908552 -122362892 + AluJb SINE Alu 1 295 -17 287 332 4 80 chr9 19908552 19908581 -122362863 - HAL1 LINE L1 -898 1609 1579 3911 198 17 63 chr9 19908581 19909597 -122361847 + LTR5 LTR ERVK 1 969 0 287 332 4 80 chr9 19909597 19909690 -122361754 - HAL1 LINE L1 -928 1579 1480 1774 127 0 8 chr9 19909690 19909977 -122361467 - AluSx SINE Alu 0 327 43 287 332 4 80 chr9 19909977 19910114 -122361330 - HAL1 LINE L1 -1027 1480 1368 * 1303 243 36 61 chr9 19910100 19910317 -122361127 - L1ME3 LINE L1 -4902 1217 996 524 100 0 0 chr9 19910317 19910397 -122361047 + MADE1 DNA Mariner 1 80 0 1303 243 36 61 chr9 19910397 19910554 -122360890 - L1ME3 LINE L1 -5123 996 837 315 0 0 0 chr9 19910554 19910589 -122360855 + (TG)n Simple_repeat Simple_repeat 1 35 0 1303 243 36 61 chr9 19910589 19910887 -122360557 - L1ME3 LINE L1 -5282 837 561 2100 122 40 0 chr9 19911166 19911341 -122360103 - AluSq SINE Alu -5 308 115 224 89 0 22 chr9 19911341 19911386 -122360058 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2100 122 40 0 chr9 19911386 19911506 -122359938 - AluSq SINE Alu -198 115 1 254 295 26 0 chr9 19911600 19911678 -122359766 - MIR SINE MIR -103 159 80 182 287 59 94 chr9 19912298 19912505 -122358939 - L2 LINE L2 -83 3189 2993 2107 125 0 58 chr9 19912505 19912832 -122358612 + AluSg SINE Alu 1 308 -2 182 287 59 94 chr9 19912832 19912910 -122358534 - L2 LINE L2 -279 2993 2914 1853 137 39 11 chr9 19913185 19913469 -122357975 + AluSx SINE Alu 1 292 -20 199 281 94 42 chr9 19914064 19914160 -122357284 + MIR SINE MIR 19 119 -143 29 0 0 0 chr9 19915012 19915041 -122356403 + GC_rich Low_complexity Low_complexity 1 29 0 200 170 21 21 chr9 19916152 19916199 -122355245 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 285 274 9 57 chr9 19916534 19916640 -122354804 + MIR SINE MIR 5 105 -157 1372 143 5 27 chr9 19917102 19917325 -122354119 + AluJo SINE Alu 88 305 -7 2385 93 10 6 chr9 19917596 19917908 -122353536 - AluSp SINE Alu 0 313 1 1148 302 39 18 chr9 19918063 19918726 -122352718 - L1ME3A LINE L1 -289 5881 5204 738 135 39 39 chr9 19918761 19918939 -122352505 - L1MA7 LINE L1 0 6291 6114 592 174 8 8 chr9 19919085 19919217 -122352227 + CT-rich Low_complexity Low_complexity 1 132 0 548 292 29 87 chr9 19919218 19919279 -122352165 - L1ME3A LINE L1 -1047 5099 5036 2241 131 0 0 chr9 19919279 19919591 -122351853 - AluSx SINE Alu 0 312 1 548 292 29 87 chr9 19919591 19919931 -122351513 - L1ME3A LINE L1 -1110 5036 4746 841 280 63 63 chr9 19919931 19920296 -122351148 + MLT1J1 LTR MaLR 1 368 -78 2356 105 7 0 chr9 19920296 19920601 -122350843 - AluSc SINE Alu -2 307 1 841 280 63 63 chr9 19920601 19920681 -122350763 + MLT1J1 LTR MaLR 367 446 0 548 292 29 87 chr9 19920681 19920925 -122350519 - L1ME3A LINE L1 -1400 4746 4490 33 25 0 0 chr9 19920958 19920998 -122350446 + AT_rich Low_complexity Low_complexity 1 40 0 304 314 29 0 chr9 19921132 19921237 -122350207 + MER94 DNA DNA 24 131 -3 651 241 68 34 chr9 19921344 19921582 -122349862 - MIR SINE MIR 0 262 12 190 256 183 0 chr9 19922204 19922286 -122349158 + MIR SINE MIR 48 144 -118 344 233 56 11 chr9 19923015 19923105 -122348339 - MER91A DNA MER1_type -99 97 4 189 320 0 0 chr9 19923511 19923561 -122347883 + L2 LINE L2 3254 3303 -10 558 236 0 0 chr9 19923816 19923960 -122347484 + (TCCA)n Simple_repeat Simple_repeat 1 144 0 241 288 104 16 chr9 19923976 19924101 -122347343 - L2 LINE L2 -1 3271 3136 1001 136 39 0 chr9 19924604 19924759 -122346685 + FAM SINE Alu 12 172 -13 303 355 28 43 chr9 19924767 19924978 -122346466 - L1ME4a LINE L1 -40 6081 5874 402 345 40 6 chr9 19925990 19926164 -122345280 + MIR SINE MIR 47 226 -36 221 333 152 10 chr9 19926552 19926855 -122344589 + L2 LINE L2 2401 2746 -568 337 324 71 12 chr9 19926966 19927136 -122344308 - MER5A DNA MER1_type 0 189 10 854 211 11 16 chr9 19927446 19927631 -122343813 - MER5A DNA MER1_type -5 184 1 1855 165 7 3 chr9 19927635 19927932 -122343512 - AluJb SINE Alu -13 299 2 238 360 26 9 chr9 19927964 19928078 -122343366 + L2 LINE L2 2892 3007 -265 330 169 0 0 chr9 19929122 19929187 -122342257 + CT-rich Low_complexity Low_complexity 1 65 0 761 157 0 0 chr9 19929697 19929812 -122341632 + FLAM_C SINE Alu 1 115 -18 545 0 0 15 chr9 19929813 19929879 -122341565 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 881 229 28 5 chr9 19930142 19930356 -122341088 - MER20 DNA MER1_type 0 219 1 423 315 68 24 chr9 19930398 19930649 -122340795 + Tigger8 DNA MER2_type 69 330 -336 835 281 54 0 chr9 19933867 19934088 -122337356 + MIR SINE MIR 6 238 -24 467 243 44 48 chr9 19935504 19935748 -122335696 + MIR SINE MIR 12 256 -6 196 194 0 0 chr9 19935833 19935869 -122335575 + MIR SINE MIR 109 144 -118 372 239 68 26 chr9 19936437 19936554 -122334890 + MIR SINE MIR 20 141 -67 2293 99 13 3 chr9 19936579 19936882 -122334562 + AluSx SINE Alu 6 311 -1 727 233 52 7 chr9 19936885 19937089 -122334355 + MIR SINE MIR 34 255 -7 186 271 51 0 chr9 19937907 19937966 -122333478 + MIR SINE MIR 84 145 -63 2250 95 7 3 chr9 19938023 19938318 -122333126 + AluSg SINE Alu 1 296 -14 296 350 29 7 chr9 19938342 19938479 -122332965 + MIR SINE MIR 86 225 -37 305 282 60 17 chr9 19939451 19939568 -122331876 - MIR SINE MIR -35 227 106 230 244 33 33 chr9 19939894 19939984 -122331460 + GA-rich Low_complexity Low_complexity 5 94 0 423 318 39 34 chr9 19940662 19940895 -122330549 - L1MC4a LINE L1 -1910 5898 5665 195 313 45 80 chr9 19941001 19941113 -122330331 - L2 LINE L2 -1034 2280 2173 233 221 15 59 chr9 19941254 19941322 -122330122 + L2 LINE L2 3208 3272 0 409 298 43 14 chr9 19941700 19941841 -122329603 - MIR SINE MIR -40 222 78 2185 99 0 0 chr9 19941873 19942183 -122329261 - AluSx SINE Alu 0 310 1 214 255 0 0 chr9 19942870 19942921 -122328523 + (TG)n Simple_repeat Simple_repeat 2 52 0 920 195 105 0 chr9 19944137 19944327 -122327117 + MER6B DNA MER2_type 1 210 0 192 264 46 46 chr9 19945569 19945656 -122325788 + MIR SINE MIR 31 117 -145 210 37 0 0 chr9 19945884 19945911 -122325533 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 307 305 199 0 chr9 19946488 19946639 -122324805 + MIR SINE MIR 63 243 -19 306 295 81 50 chr9 19948146 19948404 -122323040 + L2 LINE L2 2539 2804 -510 2489 68 0 6 chr9 19948876 19949187 -122322257 + AluSc SINE Alu 1 309 0 2712 7 0 0 chr9 19949199 19949498 -122321946 + AluY SINE Alu 1 299 -12 358 247 24 12 chr9 19949804 19949889 -122321555 + L2 LINE L2 3227 3312 -1 441 293 48 2 chr9 19950055 19950255 -122321189 + MIR3 SINE MIR 47 254 -8 286 307 268 21 chr9 19951295 19951461 -122319983 + L3 LINE CR1 963 1087 -490 2313 93 7 3 chr9 19951461 19951771 -122319673 + AluSx SINE Alu 2 312 0 286 307 268 21 chr9 19951771 19951884 -122319560 + L3 LINE CR1 1087 1311 -266 560 248 12 6 chr9 19952707 19953034 -122318410 + (TGGA)n Simple_repeat Simple_repeat 1 328 0 283 291 105 26 chr9 19953718 19953938 -122317506 + MIR3 SINE MIR 4 255 -7 219 276 0 0 chr9 19954094 19954152 -122317292 + L2 LINE L2 3215 3272 0 254 188 0 0 chr9 19954227 19954275 -122317169 + MIR SINE MIR 188 235 -27 652 255 157 74 chr9 19954655 19955053 -122316391 + L2 LINE L2 2244 2608 -705 2258 113 0 0 chr9 19955053 19955362 -122316082 + AluSx SINE Alu 4 312 0 652 255 157 74 chr9 19955362 19955526 -122315918 + L2 LINE L2 2608 2757 -556 844 158 0 0 chr9 19955526 19955659 -122315785 - FLAM_C SINE Alu 0 133 1 652 255 157 74 chr9 19955659 19956044 -122315400 + L2 LINE L2 2757 3300 -13 2254 104 0 0 chr9 19956046 19956355 -122315089 + AluSg SINE Alu 1 309 -1 47 19 0 0 chr9 19956703 19956757 -122314687 + GC_rich Low_complexity Low_complexity 1 54 0 478 299 51 0 chr9 19957174 19957331 -122314113 - MIR SINE MIR -92 170 6 285 354 55 18 chr9 19957817 19957981 -122313463 - MIR SINE MIR -11 251 82 404 284 53 62 chr9 19958563 19958771 -122312673 - L2 LINE L2 -219 3053 2848 455 257 40 46 chr9 19959238 19959390 -122312054 - MIR SINE MIR -88 174 24 1861 53 0 4 chr9 19959505 19959732 -122311712 + AluY SINE Alu 77 302 -9 468 285 95 0 chr9 19960179 19960337 -122311107 + MIR SINE MIR 80 252 -10 481 279 49 77 chr9 19960560 19960649 -122310795 - MIR SINE MIR -20 242 159 2287 98 0 3 chr9 19960649 19960955 -122310489 - AluSx SINE Alu -1 311 7 481 279 49 77 chr9 19960955 19961048 -122310396 - MIR SINE MIR -103 159 65 425 315 67 6 chr9 19961069 19961234 -122310210 - MIR SINE MIR -54 208 34 413 321 14 36 chr9 19962076 19962216 -122309228 + MER91A DNA MER1_type 2 138 -58 250 211 133 11 chr9 19962392 19962482 -122308962 - MIR SINE MIR -44 218 118 * 400 301 0 27 chr9 19962480 19962626 -122308818 - L2 LINE L2 -165 3107 2966 762 298 5 0 chr9 19963220 19963411 -122308033 + MIR SINE MIR 65 256 -6 490 318 51 42 chr9 19963553 19963886 -122307558 - L2 LINE L2 -468 2846 2511 225 254 0 28 chr9 19964861 19964932 -122306512 + (CA)n Simple_repeat Simple_repeat 1 69 0 21 0 0 0 chr9 19966871 19966892 -122304552 + GC_rich Low_complexity Low_complexity 1 21 0 272 173 24 47 chr9 19967360 19967487 -122303957 + (CTGGGG)n Simple_repeat Simple_repeat 4 127 0 450 300 126 22 chr9 19967692 19967915 -122303529 - MIR SINE MIR 0 262 17 189 257 133 0 chr9 19968489 19968594 -122302850 + L2 LINE L2 2379 2497 -817 204 335 125 23 chr9 19968829 19969133 -122302311 + L2 LINE L2 2820 3154 -118 214 264 190 33 chr9 19970913 19971034 -122300410 - L3 LINE CR1 -9 1568 1429 450 323 205 41 chr9 19971129 19971381 -122300063 - L3 LINE CR1 -467 1110 901 2254 67 3 0 chr9 19971381 19971718 -122299726 - AluSp SINE Alu 0 338 1 450 323 205 41 chr9 19971718 19972177 -122299267 - L3 LINE CR1 -676 901 281 453 248 74 22 chr9 19972695 19972843 -122298601 - MIR3 SINE MIR -25 183 28 182 304 101 14 chr9 19972878 19972947 -122298497 - L3 LINE CR1 -1222 355 281 181 237 0 0 chr9 19973002 19973040 -122298404 - MIR3 SINE MIR -8 200 163 289 277 0 0 chr9 19973262 19973327 -122298117 - MIR SINE MIR -63 145 81 260 310 121 0 chr9 19973551 19973667 -122297777 - MIR3 SINE MIR -65 143 14 208 255 0 0 chr9 19974107 19974158 -122297286 + (CA)n Simple_repeat Simple_repeat 1 51 0 387 320 187 24 chr9 19974853 19975184 -122296260 - L2 LINE L2 0 3272 2888 280 250 116 62 chr9 19975221 19975333 -122296111 - L2 LINE L2 -625 2689 2572 411 219 16 32 chr9 19976299 19976422 -122295022 + AluJb SINE Alu 167 287 -25 4285 178 29 39 chr9 19976447 19976670 -122294774 + L1MB3 LINE L1 5110 5334 -849 1926 127 3 3 chr9 19976670 19976988 -122294456 + AluSx SINE Alu 1 318 0 4285 178 29 39 chr9 19976988 19977147 -122294297 + L1MB3 LINE L1 5334 5493 -690 212 0 36 0 chr9 19977147 19977175 -122294269 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4285 178 29 39 chr9 19977175 19977852 -122293592 + L1MB3 LINE L1 5493 6182 -1 2141 108 10 16 chr9 19977926 19978240 -122293204 + AluSx SINE Alu 1 312 0 1585 188 64 0 chr9 19978456 19978738 -122292706 - AluJo SINE Alu -12 300 1 704 195 24 0 chr9 19979040 19979163 -122292281 - FLAM_A SINE Alu -7 126 1 1942 141 3 0 chr9 19979207 19979504 -122291940 + AluSx SINE Alu 1 298 -14 743 274 8 46 chr9 19979961 19980224 -122291220 - L2 LINE L2 -201 3071 2819 218 318 167 8 chr9 19980491 19980623 -122290821 + MIR SINE MIR 60 212 -50 346 322 119 41 chr9 19980983 19981278 -122290166 + L2 LINE L2 2643 2960 -354 2126 118 0 0 chr9 19981359 19981679 -122289765 + AluSx SINE Alu 1 320 0 225 229 0 0 chr9 19981679 19981727 -122289717 - MIR SINE MIR -98 164 117 628 277 121 9 chr9 19981893 19982117 -122289327 + MIR SINE MIR 2 250 -12 488 247 47 27 chr9 19982374 19982524 -122288920 + MIR SINE MIR 20 172 -90 246 216 81 72 chr9 19982722 19982833 -122288611 - Charlie8 DNA MER1_type -2197 220 109 687 197 197 17 chr9 19982843 19983076 -122288368 + L1ME3A LINE L1 5895 6169 -1 2113 131 0 6 chr9 19983465 19983777 -122287667 + AluSx SINE Alu 1 310 -2 1888 113 0 0 chr9 19984848 19985096 -122286348 - AluSg SINE Alu -28 282 35 288 262 118 73 chr9 19985110 19985341 -122286103 - MIR SINE MIR -5 257 1 558 0 0 0 chr9 19987028 19987090 -122284354 + (TG)n Simple_repeat Simple_repeat 2 63 0 220 333 52 0 chr9 19988296 19988392 -122283052 - L2 LINE L2 -14 3299 3199 397 284 115 65 chr9 19988500 19988963 -122282481 + L2 LINE L2 2620 3255 -17 276 317 42 34 chr9 19989287 19989444 -122282000 + MIR SINE MIR 10 168 -40 228 298 42 47 chr9 19989616 19989807 -122281637 + L2 LINE L2 2892 3081 -191 379 327 13 46 chr9 19989860 19990035 -122281409 + MIR SINE MIR 3 170 -63 258 319 70 32 chr9 19990184 19990369 -122281075 + L2 LINE L2 2894 3085 -187 287 279 47 0 chr9 19990385 19990471 -122280973 - MIR SINE MIR -75 187 98 412 247 70 32 chr9 19991177 19991335 -122280109 + MIR SINE MIR 79 242 -20 197 187 27 80 chr9 19991708 19991783 -122279661 - L2 LINE L2 0 3272 3202 1902 166 23 0 chr9 19992504 19992806 -122278638 + AluJb SINE Alu 4 312 0 846 176 0 0 chr9 19992822 19992953 -122278491 + FLAM_A SINE Alu 1 131 -2 196 297 54 0 chr9 19993046 19993120 -122278324 + L2 LINE L2 2984 3061 -252 1747 152 22 4 chr9 19993357 19993657 -122277787 - AluSx SINE Alu 0 305 1 536 128 13 0 chr9 19993836 19993914 -122277530 - AluSq/x SINE Alu -196 117 39 262 296 0 0 chr9 19993921 19994002 -122277442 + LTR16C LTR ERVL 408 488 -3 197 323 0 0 chr9 19994168 19994233 -122277211 + L2 LINE L2 3240 3304 -9 1730 133 56 4 chr9 19994391 19994661 -122276783 + AluJb SINE Alu 1 284 -28 192 160 0 0 chr9 19994661 19994706 -122276738 + (TA)n Simple_repeat Simple_repeat 2 46 0 1694 143 0 102 chr9 19994716 19994850 -122276594 + AluSx SINE Alu 2 148 -184 2358 109 0 0 chr9 19994850 19995153 -122276291 + AluSx SINE Alu 1 303 -9 1694 143 0 102 chr9 19995153 19995381 -122276063 + AluSx SINE Alu 148 332 0 2157 113 10 13 chr9 19995391 19995700 -122275744 + AluSx SINE Alu 1 308 -4 930 191 48 0 chr9 19996224 19996412 -122275032 + MER20 DNA MER1_type 2 198 -21 366 290 83 21 chr9 19996504 19996697 -122274747 + MIR SINE MIR 46 250 -12 1922 177 25 32 chr9 19996749 19997156 -122274288 + MLT1C LTR MaLR 59 462 -5 314 284 32 0 chr9 19998227 19998322 -122273122 + MIR SINE MIR 41 138 -124 293 314 64 16 chr9 19998412 19998600 -122272844 - MIR SINE MIR -6 256 60 832 117 8 0 chr9 19998604 19998724 -122272720 - FRAM SINE Alu -11 165 45 255 170 0 0 chr9 20002076 20002123 -122269321 + A-rich Low_complexity Low_complexity 1 47 0 347 293 70 6 chr9 20003332 20003489 -122267955 - MIR SINE MIR -76 186 20 25 51 0 0 chr9 20004744 20004783 -122266661 + AT_rich Low_complexity Low_complexity 1 39 0 605 161 0 0 chr9 20004783 20004876 -122266568 - FLAM_C SINE Alu -19 124 32 3593 115 2 2 chr9 20005664 20006177 -122265267 - MER75 DNA T2_type 0 514 2 435 301 143 19 chr9 20006827 20007043 -122264401 + MIR SINE MIR 20 262 0 275 355 63 7 chr9 20007098 20007266 -122264178 - MIR3 SINE MIR -21 187 12 271 262 0 0 chr9 20008862 20008923 -122262521 + MIR SINE MIR 87 147 -115 835 281 31 12 chr9 20009338 20009594 -122261850 - MIR SINE MIR 0 262 2 243 88 0 0 chr9 20011917 20011951 -122259493 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr9 20013379 20013400 -122258044 + AT_rich Low_complexity Low_complexity 1 21 0 358 234 81 102 chr9 20014507 20014707 -122256737 - L1ME4a LINE L1 -4 6117 5914 213 39 0 0 chr9 20014707 20014733 -122256711 + (TA)n Simple_repeat Simple_repeat 1 26 0 358 234 81 102 chr9 20014733 20015003 -122256441 - L1ME4a LINE L1 -207 5914 5657 1968 140 0 11 chr9 20015349 20015634 -122255810 + AluSx SINE Alu 1 282 -30 246 62 0 0 chr9 20015637 20015669 -122255775 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr9 20015956 20015990 -122255454 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr9 20016360 20016385 -122255059 + AT_rich Low_complexity Low_complexity 1 25 0 903 174 0 32 chr9 20016388 20016543 -122254901 + AluJo SINE Alu 1 150 -162 1253 237 17 36 chr9 20016548 20016906 -122254538 - LTR27 LTR ERV1 -2 634 284 733 219 0 18 chr9 20016886 20017055 -122254389 - LTR28 LTR ERV1 -854 166 1 * 915 188 6 0 chr9 20017055 20017215 -122254229 + AluJo SINE Alu 147 307 -5 297 0 0 0 chr9 20017268 20017301 -122254143 + (CA)n Simple_repeat Simple_repeat 2 34 0 480 259 121 26 chr9 20018667 20018899 -122252545 + MIR SINE MIR 4 257 -5 2427 196 12 10 chr9 20019027 20019538 -122251906 - L1MB7 LINE L1 -16 6168 5657 357 279 41 46 chr9 20020552 20020735 -122250709 + MIR SINE MIR 78 262 0 410 280 25 19 chr9 20021006 20021163 -122250281 + MIR SINE MIR 10 167 -95 367 200 114 29 chr9 20021885 20022025 -122249419 - L1ME4a LINE L1 -3 6118 5967 344 305 142 11 chr9 20024086 20024276 -122247168 + MIR SINE MIR 20 234 -28 252 258 48 24 chr9 20024623 20024747 -122246697 + L1MEd LINE L1 44 170 -5949 391 330 99 0 chr9 20025052 20025285 -122246159 + L1MEd LINE L1 561 816 -5303 2599 108 59 5 chr9 20025292 20025698 -122245746 - MSTA LTR MaLR 0 428 1 542 270 100 32 chr9 20025703 20026014 -122245430 + L1ME3A LINE L1 5610 5941 -229 2168 149 6 3 chr9 20026386 20026722 -122244722 + MER1B DNA MER1_type 1 337 0 1648 115 152 7 chr9 20027301 20027571 -122243873 - AluSg1 SINE Alu 0 309 1 23 54 0 0 chr9 20028217 20028254 -122243190 + AT_rich Low_complexity Low_complexity 1 37 0 583 178 19 130 chr9 20028266 20028474 -122242970 - MIR SINE MIR -33 229 45 2266 50 0 53 chr9 20028549 20028878 -122242566 - AluY SINE Alu 0 313 1 403 248 60 72 chr9 20029157 20029310 -122242134 - MIR SINE MIR -65 143 3 451 323 0 31 chr9 20029849 20030010 -122241434 + MIR SINE MIR 23 178 -84 4346 139 21 56 chr9 20030012 20030661 -122240783 + L1PB4 LINE L1 5362 5977 -179 2350 105 0 0 chr9 20030661 20030957 -122240487 + AluSq SINE Alu 1 296 -17 4346 139 21 56 chr9 20030957 20031129 -122240315 + L1PB4 LINE L1 5977 6154 -2 196 338 0 0 chr9 20031140 20031214 -122240230 + MIR SINE MIR 186 259 -3 21 0 0 0 chr9 20032646 20032667 -122238777 + AT_rich Low_complexity Low_complexity 1 21 0 224 254 117 45 chr9 20033071 20033237 -122238207 - MIR SINE MIR -65 143 20 546 274 19 6 chr9 20034678 20034835 -122236609 - MER5B DNA MER1_type -18 160 2 28 0 0 0 chr9 20034961 20034989 -122236455 + AT_rich Low_complexity Low_complexity 1 28 0 1646 195 7 10 chr9 20034989 20035297 -122236147 - AluJb SINE Alu -5 307 1 401 55 0 0 chr9 20036009 20036064 -122235380 - L1PA6 LINE L1 -3 6151 6097 3168 87 11 104 chr9 20036230 20036759 -122234685 - LTR12 LTR ERV1 -234 480 1 2227 103 0 3 chr9 20037185 20037477 -122233967 + AluSx SINE Alu 1 291 -21 24 67 0 0 chr9 20037572 20037617 -122233827 + AT_rich Low_complexity Low_complexity 1 45 0 688 262 109 14 chr9 20037783 20038004 -122233440 + MIR SINE MIR 11 252 -10 2267 110 10 3 chr9 20038221 20038530 -122232914 - AluSx SINE Alu -1 311 1 337 204 68 23 chr9 20038894 20038982 -122232462 + MIR SINE MIR 168 259 -3 198 0 0 0 chr9 20039479 20039501 -122231943 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1701 163 134 25 chr9 20039790 20040237 -122231207 + LTR54B LTR ERV1 1 496 -2 358 299 130 0 chr9 20041981 20042135 -122229309 - MIR SINE MIR 0 262 89 345 223 176 40 chr9 20044111 20044259 -122227185 + MLT1H LTR MaLR 379 546 -3 565 180 168 43 chr9 20044517 20044678 -122226766 - MER5A DNA MER1_type 0 189 9 1811 146 124 64 chr9 20044705 20045109 -122226335 - MSTA LTR MaLR 0 428 1 261 209 191 36 chr9 20045649 20045759 -122225685 - L2 LINE L2 -1 3271 3145 353 237 20 96 chr9 20047657 20047855 -122223589 + L1ME4a LINE L1 5813 5995 -126 21 0 0 0 chr9 20047874 20047895 -122223549 + AT_rich Low_complexity Low_complexity 1 21 0 354 274 124 24 chr9 20048474 20048854 -122222590 - L1M4 LINE L1 -3527 2619 2202 1834 175 0 10 chr9 20048927 20049236 -122222208 - AluJb SINE Alu -6 306 1 180 0 0 0 chr9 20049385 20049405 -122222039 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2191 114 0 0 chr9 20049418 20049715 -122221729 - AluSg SINE Alu -11 299 3 204 111 0 0 chr9 20051445 20051481 -122219963 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 802 125 0 0 chr9 20052115 20052227 -122219217 - FRAM SINE Alu -19 157 46 2407 77 3 3 chr9 20052475 20052786 -122218658 - AluY SINE Alu 0 311 1 459 287 9 0 chr9 20054047 20054155 -122217289 - MER81 DNA DNA -5 109 1 437 247 103 49 chr9 20054446 20054669 -122216775 + MLT1L LTR MaLR 368 602 -13 207 255 0 0 chr9 20055153 20055200 -122216244 + GA-rich Low_complexity Low_complexity 2 48 0 247 255 47 7 chr9 20057116 20057265 -122214179 + (TTAAA)n Simple_repeat Simple_repeat 2 156 0 24 32 0 0 chr9 20057265 20057296 -122214148 + AT_rich Low_complexity Low_complexity 1 31 0 398 115 0 0 chr9 20057476 20057528 -122213916 + AluJ/FRAM SINE Alu 231 282 -20 290 260 10 40 chr9 20058307 20058407 -122213037 - HsTC2 DNA Tc2 -1799 99 3 330 297 54 7 chr9 20059115 20059263 -122212181 - MER103 DNA DNA -10 156 2 194 244 44 0 chr9 20059398 20059443 -122212001 - L2 LINE L2 -556 2758 2712 286 309 0 0 chr9 20059496 20059564 -122211880 - L2 LINE L2 0 3313 3246 297 317 41 28 chr9 20059671 20059816 -122211628 - L2 LINE L2 -4 3268 3122 447 19 0 0 chr9 20059940 20059992 -122211452 + (TA)n Simple_repeat Simple_repeat 1 52 0 2158 106 0 35 chr9 20060001 20060313 -122211131 - AluSx SINE Alu -11 301 1 186 118 0 0 chr9 20060586 20060620 -122210824 + (CAA)n Simple_repeat Simple_repeat 3 36 0 233 29 0 0 chr9 20060821 20060856 -122210588 + L1PA3 LINE L1 6120 6154 -1 738 254 62 0 chr9 20060886 20061146 -122210298 - MER69 DNA AcHobo -236 2290 2015 * 2520 258 78 36 chr9 20061145 20061914 -122209530 - MER69 DNA AcHobo -425 801 1 236 378 115 35 chr9 20062813 20063454 -122207990 + L2 LINE L2 2353 3046 -226 590 264 104 26 chr9 20063541 20063734 -122207710 - MIR SINE MIR -8 254 47 2210 128 0 0 chr9 20063841 20064146 -122207298 - AluSx SINE Alu -7 305 1 264 344 49 33 chr9 20064146 20064268 -122207176 + L2 LINE L2 3142 3265 -7 21 36 0 0 chr9 20064280 20064308 -122207136 + AT_rich Low_complexity Low_complexity 1 28 0 1951 130 0 7 chr9 20066952 20067293 -122204151 - AluSx SINE Alu 0 339 1 438 233 98 78 chr9 20067443 20067636 -122203808 + MIR SINE MIR 24 220 -42 522 367 52 46 chr9 20067645 20068013 -122203431 - L2 LINE L2 0 3272 2903 497 335 174 19 chr9 20068017 20068504 -122202940 - L2 LINE L2 -1037 2277 1715 1876 138 0 7 chr9 20068849 20069125 -122202319 + AluSx SINE Alu 1 274 -38 441 333 9 0 chr9 20069164 20069278 -122202166 - L2 LINE L2 -22 3250 3136 203 245 42 189 chr9 20069678 20069764 -122201680 - MIR3 SINE MIR -6 202 144 2219 125 3 0 chr9 20069764 20070076 -122201368 + AluSq SINE Alu 1 313 0 203 245 42 189 chr9 20070076 20070132 -122201312 - MIR3 SINE MIR -64 144 81 220 197 15 15 chr9 20070375 20070441 -122201003 + (TA)n Simple_repeat Simple_repeat 2 67 0 272 178 27 14 chr9 20070472 20070545 -122200899 + (TA)n Simple_repeat Simple_repeat 1 74 0 343 295 36 18 chr9 20070645 20070811 -122200633 - L1M4 LINE L1 -2056 4090 3922 3885 93 17 25 chr9 20070859 20071447 -122199997 - L1PA11 LINE L1 0 6174 5592 1934 123 3 71 chr9 20071500 20071824 -122199620 - AluSc SINE Alu -7 302 1 386 0 41 0 chr9 20071825 20071874 -122199570 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1823 150 11 17 chr9 20071874 20072161 -122199283 - AluJb SINE Alu -27 285 1 1195 232 50 138 chr9 20072267 20073562 -122197882 - L1MC5 LINE L1 -60 7901 6721 378 329 13 60 chr9 20073567 20073809 -122197635 - L1M4 LINE L1 -2391 3755 3528 2258 88 0 50 chr9 20073809 20074127 -122197317 - AluSq SINE Alu -11 302 1 378 329 13 60 chr9 20074127 20074182 -122197262 - L1M4 LINE L1 -2618 3528 3472 236 235 25 67 chr9 20074184 20074303 -122197141 - L1MEd LINE L1 -5988 131 18 5157 273 51 15 chr9 20075091 20076901 -122194543 + L1MD2 LINE L1 39 1914 -4482 8157 237 78 30 chr9 20076926 20080025 -122191419 + L1MD2 LINE L1 2009 5227 -988 1234 244 32 48 chr9 20080053 20080394 -122191050 + L1MD2 LINE L1 5656 5992 -436 2347 84 10 0 chr9 20080394 20080690 -122190754 - AluSg SINE Alu -11 299 1 1234 244 32 48 chr9 20080690 20080721 -122190723 + L1MD2 LINE L1 5992 6022 -406 387 77 0 0 chr9 20080797 20080849 -122190595 + MADE1 DNA Mariner 28 79 -1 196 333 0 0 chr9 20080928 20080982 -122190462 - L2 LINE L2 -687 2627 2574 390 324 27 0 chr9 20081488 20081636 -122189808 + MER117 DNA MER1_type 11 162 -35 245 313 24 12 chr9 20082026 20082109 -122189335 - MIR SINE MIR -108 154 71 191 36 36 0 chr9 20082110 20082138 -122189306 + (CTGGGG)n Simple_repeat Simple_repeat 1 29 0 316 281 105 9 chr9 20082347 20082461 -122188983 - MIR SINE MIR -127 135 11 244 278 0 42 chr9 20084472 20084544 -122186900 - L2 LINE L2 -4 3268 3200 341 376 23 8 chr9 20085054 20085187 -122186257 + L3b LINE CR1 1443 1577 -6 188 319 124 26 chr9 20085287 20085400 -122186044 - L2 LINE L2 -17 3255 3132 202 111 0 44 chr9 20086094 20086139 -122185305 + (TC)n Simple_repeat Simple_repeat 2 44 0 1533 175 10 32 chr9 20086533 20086842 -122184602 + AluJo SINE Alu 3 304 -8 217 276 143 38 chr9 20087683 20087788 -122183656 - MIR SINE MIR -131 131 16 1305 176 45 77 chr9 20089287 20089600 -122181844 + AluJo SINE Alu 10 312 0 210 273 0 0 chr9 20090073 20090128 -122181316 + (TA)n Simple_repeat Simple_repeat 1 55 0 2324 104 0 0 chr9 20090746 20091053 -122180391 - AluSx SINE Alu -5 307 1 298 317 195 0 chr9 20091073 20091196 -122180248 - MER5A DNA MER1_type 0 189 43 641 215 8 8 chr9 20092484 20092614 -122178830 - L3 LINE CR1 -2 1575 1446 870 312 108 64 chr9 20092659 20093424 -122178020 - L3 LINE CR1 -343 1234 436 216 309 44 0 chr9 20093482 20093550 -122177894 - L3 LINE CR1 -1071 506 436 247 257 18 106 chr9 20093632 20093745 -122177699 + MIR SINE MIR 105 207 -55 315 319 31 66 chr9 20095332 20095558 -122175886 - L2 LINE L2 -4 3309 3092 226 295 150 29 chr9 20095608 20095781 -122175663 + L2 LINE L2 2672 2865 -449 474 292 0 56 chr9 20095871 20096015 -122175429 + L2 LINE L2 3136 3271 -1 184 343 71 40 chr9 20096146 20096245 -122175199 - L2 LINE L2 -22 3291 3190 239 259 159 65 chr9 20096277 20096447 -122174997 - L2 LINE L2 -9 3304 3119 1555 132 24 29 chr9 20096625 20096939 -122174505 - THE1B LTR MaLR 0 355 1 299 336 139 19 chr9 20097294 20097726 -122173718 + L2 LINE L2 1557 2040 -1274 726 309 73 19 chr9 20097779 20098096 -122173348 - LTR16A LTR ERVL -18 432 99 224 329 13 0 chr9 20099162 20099238 -122172206 + GA-rich Low_complexity Low_complexity 5 81 0 186 167 0 0 chr9 20099955 20099991 -122171453 + T-rich Low_complexity Low_complexity 1 36 0 2218 96 3 0 chr9 20100336 20100628 -122170816 - AluSg SINE Alu -17 293 1 290 296 37 0 chr9 20100665 20100746 -122170698 + L2 LINE L2 3227 3310 -3 230 311 87 3 chr9 20100744 20100914 -122170530 - MIR SINE MIR -34 228 3 * 26 30 0 0 chr9 20101562 20101595 -122169849 + AT_rich Low_complexity Low_complexity 1 33 0 1652 161 82 37 chr9 20101931 20102286 -122169158 + L1MB7 LINE L1 5795 6165 -19 659 301 51 19 chr9 20105188 20105404 -122166040 - MIR SINE MIR -15 247 25 691 258 160 18 chr9 20105832 20106057 -122165387 - MIR SINE MIR -3 259 3 453 329 61 43 chr9 20106808 20107039 -122164405 - MIR SINE MIR 0 262 28 255 79 0 0 chr9 20108976 20109014 -122162430 + (TC)n Simple_repeat Simple_repeat 2 39 0 1949 227 132 70 chr9 20109421 20110586 -122160858 - Charlie2a DNA MER1_type -6 2856 1620 2056 237 27 10 chr9 20110588 20111161 -122160283 + L1ME1 LINE L1 5236 5816 -350 850 169 62 56 chr9 20111171 20111349 -122160095 + L1ME1 LINE L1 6003 6334 0 314 240 0 13 chr9 20111352 20111427 -122160017 - Charlie2a DNA MER1_type -1227 1635 1562 344 167 14 0 chr9 20111524 20111596 -122159848 + (TA)n Simple_repeat Simple_repeat 1 73 0 1659 243 94 31 chr9 20111658 20112230 -122159214 - Charlie2a DNA MER1_type -2247 615 8 1819 200 40 38 chr9 20112676 20112883 -122158561 - MSTD LTR MaLR 0 396 186 2227 85 3 10 chr9 20112883 20113176 -122158268 - AluSp SINE Alu -22 291 1 1819 200 40 38 chr9 20113176 20113363 -122158081 - MSTD LTR MaLR -210 186 1 4896 256 69 27 chr9 20113363 20114711 -122156733 - MSTD-int LTR MaLR 0 1735 332 1034 200 14 9 chr9 20114711 20114926 -122156518 - HERVL-B3 LTR ERVL -5438 216 1 2837 168 30 51 chr9 20114926 20115492 -122155952 - MLT2B3 LTR ERVL 0 554 1 25 83 0 0 chr9 20115712 20115772 -122155672 + AT_rich Low_complexity Low_complexity 1 60 0 651 269 131 57 chr9 20116841 20117176 -122154268 - L3b LINE CR1 -121 1462 1103 411 281 116 43 chr9 20117682 20117984 -122153460 + L2 LINE L2 2970 3293 -20 1530 191 16 16 chr9 20118293 20118597 -122152847 - AluJo SINE Alu -8 304 1 251 122 0 0 chr9 20118776 20118817 -122152627 + L1ME3A LINE L1 6126 6166 -4 805 224 38 76 chr9 20119160 20119424 -122152020 + MER112 DNA MER1_type 6 259 -1 285 254 32 0 chr9 20119765 20119828 -122151616 - MIR3 SINE MIR -7 201 137 440 287 9 9 chr9 20120414 20120529 -122150915 - L2 LINE L2 -1 3312 3198 597 94 71 39 chr9 20122315 20122442 -122149002 - L1MA8 LINE L1 0 6291 6161 853 212 58 16 chr9 20122872 20123061 -122148383 + MER8 DNA MER2_type 43 239 0 703 258 8 0 chr9 20123287 20123419 -122148025 - L2 LINE L2 -6 3266 3134 25 31 0 0 chr9 20123437 20123469 -122147975 + AT_rich Low_complexity Low_complexity 1 32 0 2214 131 0 0 chr9 20123620 20123932 -122147512 + AluSx SINE Alu 1 312 0 2447 180 82 39 chr9 20124332 20124893 -122146551 - L1MB2 LINE L1 -2 6169 5585 321 253 51 13 chr9 20124910 20124989 -122146455 - L2 LINE L2 0 3313 3232 852 274 144 24 chr9 20126310 20126693 -122144751 - MLT1J LTR MaLR -82 429 1 2178 98 0 7 chr9 20126700 20127014 -122144430 - AluSx SINE Alu 0 312 1 25 23 0 23 chr9 20127457 20127472 -122143972 + AT_rich Low_complexity Low_complexity 1 15 -27 773 66 82 0 chr9 20127472 20127594 -122143850 + L1MA8 LINE L1 6150 6281 -10 25 23 0 23 chr9 20127594 20127621 -122143823 + AT_rich Low_complexity Low_complexity 15 42 0 279 385 35 42 chr9 20128013 20128156 -122143288 - L2 LINE L2 -8 3264 3123 404 290 21 34 chr9 20128556 20128820 -122142624 - L2 LINE L2 -217 3055 2771 279 184 0 0 chr9 20129092 20129141 -122142303 + L2 LINE L2 3216 3264 -8 206 30 91 0 chr9 20129272 20129305 -122142139 + T-rich Low_complexity Low_complexity 1 36 0 181 308 44 124 chr9 20129440 20129690 -122141754 - MIR SINE MIR -13 249 20 432 238 143 0 chr9 20130217 20130343 -122141101 + MIR SINE MIR 2 145 -117 317 265 41 0 chr9 20130343 20130441 -122141003 - LTR67 LTR ERVL 0 557 456 253 278 78 17 chr9 20130748 20130863 -122140581 - LTR67 LTR ERVL -338 219 98 503 248 40 0 chr9 20130906 20131031 -122140413 + MIR SINE MIR 130 259 -3 292 284 0 11 chr9 20131149 20131244 -122140200 + MIR SINE MIR 123 216 -46 205 156 22 22 chr9 20132215 20132260 -122139184 + (TA)n Simple_repeat Simple_repeat 1 45 0 446 261 46 50 chr9 20132260 20132449 -122138995 + MIR SINE MIR 14 212 -50 186 43 0 0 chr9 20135030 20135053 -122136391 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 288 53 0 0 chr9 20135318 20135356 -122136088 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr9 20136484 20136514 -122134930 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr9 20136992 20137035 -122134409 + AT_rich Low_complexity Low_complexity 1 43 0 1275 252 35 65 chr9 20141135 20141567 -122129877 + MLT1J2 LTR MaLR 3 421 -29 1430 102 16 0 chr9 20142226 20142412 -122129032 + AluSq SINE Alu 1 189 -124 21 0 0 0 chr9 20142465 20142486 -122128958 + AT_rich Low_complexity Low_complexity 1 21 0 292 338 15 53 chr9 20144052 20144185 -122127259 + L2 LINE L2 3145 3272 0 21 0 0 0 chr9 20144217 20144238 -122127206 + AT_rich Low_complexity Low_complexity 1 21 0 2404 75 0 7 chr9 20144514 20144822 -122126622 + AluY SINE Alu 6 311 0 425 234 0 0 chr9 20145072 20145149 -122126295 - L2 LINE L2 -20 3252 3176 674 207 35 35 chr9 20145995 20146164 -122125280 - MIR SINE MIR -50 212 44 331 311 104 70 chr9 20146359 20146745 -122124699 - L2 LINE L2 -30 3242 2844 223 254 0 90 chr9 20147048 20147115 -122124329 + L2 LINE L2 3207 3267 -5 1903 150 0 7 chr9 20147391 20147677 -122123767 + AluJb SINE Alu 7 290 -22 189 287 223 0 chr9 20148537 20148631 -122122813 - MIR SINE MIR -29 233 119 417 240 64 35 chr9 20148843 20149014 -122122430 + MER104 DNA MER2_type 1 176 -4 282 299 221 7 chr9 20149302 20149456 -122121988 + MER5A DNA MER1_type 1 187 -2 639 276 154 14 chr9 20149460 20149681 -122121763 + MIR SINE MIR 11 262 0 467 229 57 63 chr9 20149954 20150129 -122121315 - MER5B DNA MER1_type -4 174 1 202 246 88 0 chr9 20150900 20150957 -122120487 + MIR SINE MIR 160 221 -41 218 292 15 0 chr9 20151290 20151355 -122120089 + G-rich Low_complexity Low_complexity 2 67 0 266 266 114 82 chr9 20153692 20153876 -122117568 - MIR3 SINE MIR -6 202 13 217 369 58 10 chr9 20153955 20154058 -122117386 - L2 LINE L2 -11 3302 3195 356 325 81 44 chr9 20154818 20154978 -122116466 - L2 LINE L2 -2 3270 3105 2042 108 38 0 chr9 20155040 20155327 -122116117 + AluSx SINE Alu 1 298 -14 190 354 24 0 chr9 20155582 20155664 -122115780 - L2 LINE L2 -465 2849 2766 214 321 36 48 chr9 20157017 20157101 -122114343 - L2 LINE L2 -81 3191 3109 23 0 0 0 chr9 20158503 20158526 -122112918 + AT_rich Low_complexity Low_complexity 1 23 0 373 303 96 77 chr9 20159214 20159302 -122112142 - MIR SINE MIR -31 231 146 1942 124 31 3 chr9 20159302 20159592 -122111852 - AluSq SINE Alu -15 298 1 373 303 96 77 chr9 20159592 20159711 -122111733 - MIR SINE MIR -116 146 20 358 310 62 7 chr9 20159728 20159873 -122111571 + MIR SINE MIR 96 248 -14 2077 126 23 0 chr9 20162192 20162494 -122108950 + AluJo SINE Alu 1 309 -3 32 26 0 0 chr9 20163869 20163908 -122107536 + AT_rich Low_complexity Low_complexity 1 39 0 2056 139 48 65 chr9 20163985 20164385 -122107059 - L1MB3 LINE L1 -9 6174 5781 180 0 0 0 chr9 20164385 20164405 -122107039 + (TA)n Simple_repeat Simple_repeat 1 20 0 2056 139 48 65 chr9 20164405 20164463 -122106981 - L1MB3 LINE L1 -402 5781 5724 592 265 19 57 chr9 20164464 20164675 -122106769 - MIR SINE MIR -54 208 6 240 111 0 0 chr9 20164934 20164970 -122106474 + (TG)n Simple_repeat Simple_repeat 1 36 0 447 299 35 28 chr9 20164979 20165123 -122106321 - MIR SINE MIR -103 159 15 244 351 45 0 chr9 20166837 20166948 -122104496 + L2 LINE L2 3193 3308 -5 320 100 50 0 chr9 20168468 20168528 -122102916 + MADE1 DNA Mariner 5 67 -13 2206 109 7 0 chr9 20168866 20169169 -122102275 + AluSq SINE Alu 1 305 -8 21 36 0 0 chr9 20169650 20169678 -122101766 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 20169724 20169746 -122101698 + AT_rich Low_complexity Low_complexity 1 22 0 2938 6 0 0 chr9 20169866 20170184 -122101260 + AluYb8 SINE Alu 1 318 0 563 283 84 51 chr9 20170497 20170734 -122100710 - MLT1H LTR MaLR -195 354 110 25 75 0 0 chr9 20172367 20172420 -122099024 + AT_rich Low_complexity Low_complexity 1 53 0 299 163 0 0 chr9 20173471 20173520 -122097924 - L2 LINE L2 0 3313 3265 21 57 0 0 chr9 20173685 20173720 -122097724 + AT_rich Low_complexity Low_complexity 1 35 0 202 171 86 0 chr9 20173788 20173823 -122097621 + L2 LINE L2 3220 3257 -15 180 227 0 45 chr9 20174028 20174072 -122097372 - MIR3 SINE MIR -24 184 143 1516 188 15 6 chr9 20174104 20174428 -122097016 - L1MB1 LINE L1 0 6168 5842 5313 180 66 38 chr9 20174430 20175284 -122096160 - L1MB1 LINE L1 -964 5182 4280 2421 58 10 3 chr9 20175284 20175593 -122095851 - AluY SINE Alu 0 311 1 5313 180 66 38 chr9 20175593 20176019 -122095425 - L1MB1 LINE L1 -1866 4280 3867 746 258 0 28 chr9 20176023 20176205 -122095239 + MER5B DNA MER1_type 2 178 0 1805 168 0 0 chr9 20176293 20176590 -122094854 - AluSx SINE Alu -7 305 9 180 0 0 0 chr9 20176977 20176997 -122094447 + (AGTTG)n Simple_repeat Simple_repeat 2 21 0 189 107 0 0 chr9 20177051 20177079 -122094365 + (A)n Simple_repeat Simple_repeat 1 28 0 225 159 0 0 chr9 20177189 20177233 -122094211 + GA-rich Low_complexity Low_complexity 1 44 0 254 354 20 0 chr9 20177566 20177665 -122093779 + MIR SINE MIR 41 141 -121 253 229 0 0 chr9 20177673 20177721 -122093723 + L2 LINE L2 3262 3309 -4 3574 21 39 0 chr9 20178381 20178813 -122092631 - L1PA2 LINE L1 0 6155 5707 260 135 0 19 chr9 20178946 20178998 -122092446 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 3220 148 13 2 chr9 20179117 20179657 -122091787 - L1PB4 LINE L1 -1 6155 5610 1621 118 4 0 chr9 20179661 20179890 -122091554 - AluSg/x SINE Alu -1 309 80 1142 117 6 0 chr9 20182243 20182422 -122089022 + L1MA2 LINE L1 6125 6304 0 40 49 0 0 chr9 20182444 20182505 -122088939 + AT_rich Low_complexity Low_complexity 1 61 0 27 29 0 0 chr9 20182705 20182739 -122088705 + AT_rich Low_complexity Low_complexity 1 34 0 1027 138 29 0 chr9 20183092 20183266 -122088178 + L1PA16 LINE L1 5979 6157 -9 27848 49 2 1 chr9 20183404 20187673 -122083771 - L1PA5 LINE L1 0 6154 1880 661 233 0 31 chr9 20187958 20188117 -122083327 + FRAM SINE Alu 20 173 -3 2128 114 0 0 chr9 20188860 20189141 -122082303 - AluSx SINE Alu -31 281 1 2957 97 52 52 chr9 20189151 20189668 -122081776 - L1PA11 LINE L1 -2 6172 5656 533 313 99 14 chr9 20190381 20190592 -122080852 + MIR SINE MIR 26 254 -8 182 88 0 29 chr9 20190866 20190900 -122080544 + (CTTTG)n Simple_repeat Simple_repeat 2 34 0 242 337 174 0 chr9 20191163 20191261 -122080183 - MIR SINE MIR -64 144 30 502 286 50 0 chr9 20191651 20191791 -122079653 - MIR SINE MIR -5 257 111 191 298 0 0 chr9 20192722 20192769 -122078675 + L2 LINE L2 3221 3267 -5 895 269 4 13 chr9 20192785 20193012 -122078432 + MIR SINE MIR 2 226 -36 1200 268 27 27 chr9 20193237 20193648 -122077796 + L1ME4a LINE L1 5494 5904 -217 342 261 72 29 chr9 20193672 20193810 -122077634 + L1ME4a LINE L1 5973 6116 -5 310 175 18 0 chr9 20194686 20194743 -122076701 - L2 LINE L2 0 3313 3256 642 175 0 0 chr9 20195299 20195413 -122076031 + FLAM_A SINE Alu 24 137 -5 242 273 18 0 chr9 20195557 20195612 -122075832 + L2 LINE L2 2928 2983 -330 5659 113 55 60 chr9 20195630 20196617 -122074827 - THE1C-int LTR MaLR -598 982 1 1934 167 27 19 chr9 20196617 20196989 -122074455 - THE1C LTR MaLR 0 375 1 658 288 169 47 chr9 20198118 20198563 -122072881 - L2 LINE L2 -11 3302 2804 1577 174 16 44 chr9 20198616 20199051 -122072393 + AluJo SINE Alu 1 426 0 340 301 101 27 chr9 20199053 20199272 -122072172 - L2 LINE L2 -559 2755 2521 437 283 9 0 chr9 20199401 20199507 -122071937 + MIR3 SINE MIR 95 201 -7 201 251 106 73 chr9 20200234 20200413 -122071031 - L2 LINE L2 -19 3294 3110 250 258 0 32 chr9 20200424 20200486 -122070958 + L2 LINE L2 3174 3233 -39 2074 209 114 10 chr9 20200514 20201006 -122070438 + MER119 DNA MER1_type 41 583 0 2209 111 3 0 chr9 20201870 20202167 -122069277 + AluSq SINE Alu 4 301 -12 265 334 59 8 chr9 20202249 20202369 -122069075 + MIR SINE MIR 4 141 -67 264 248 105 40 chr9 20202427 20202580 -122068864 + L1MC/D LINE L1 5726 5885 -302 197 365 29 0 chr9 20202881 20202985 -122068459 + MIR SINE MIR 124 230 -32 1996 168 34 11 chr9 20203015 20203396 -122068048 + MLT1B LTR MaLR 1 390 0 429 236 27 18 chr9 20204685 20204795 -122066649 + MIR SINE MIR 63 173 -89 345 320 64 32 chr9 20205795 20205951 -122065493 - MIR SINE MIR -32 230 70 582 182 10 0 chr9 20206961 20207060 -122064384 - FRAM SINE Alu -22 154 55 189 0 0 0 chr9 20208272 20208293 -122063151 + (A)n Simple_repeat Simple_repeat 1 21 0 3131 192 26 12 chr9 20208712 20209354 -122062090 - MER82 DNA MER2_type -1 652 2 257 263 73 56 chr9 20209472 20209704 -122061740 + L1MEd LINE L1 914 1149 -4970 385 323 64 38 chr9 20209713 20210106 -122061338 + HAL1 LINE L1 1301 1703 -804 216 97 0 0 chr9 20210182 20210213 -122061231 + (TATG)n Simple_repeat Simple_repeat 4 34 0 691 276 48 99 chr9 20210232 20210459 -122060985 + MLT1I LTR MaLR 28 228 -181 368 288 163 0 chr9 20210459 20210619 -122060825 + MER5A DNA MER1_type 4 189 0 691 276 48 99 chr9 20210619 20210786 -122060658 + MLT1I LTR MaLR 228 402 -7 1060 224 37 58 chr9 20210798 20211093 -122060351 + MLT1E2 LTR MaLR 1 289 -337 430 241 45 22 chr9 20211558 20211695 -122059749 - L1ME LINE L1 -577 5572 5436 * 449 298 152 3 chr9 20211693 20211982 -122059462 - L1ME LINE L1 -2325 3804 3473 21 0 0 0 chr9 20211987 20212008 -122059436 + AT_rich Low_complexity Low_complexity 1 21 0 804 228 141 0 chr9 20212017 20212223 -122059221 + MIR SINE MIR 2 236 -26 914 277 136 23 chr9 20212479 20213364 -122058080 - L1ME LINE L1 -2919 3210 2226 21 36 0 0 chr9 20213364 20213392 -122058052 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr9 20213469 20213512 -122057932 + AT_rich Low_complexity Low_complexity 1 43 0 303 317 62 57 chr9 20213524 20213872 -122057572 - L1MEc LINE L1 -3987 2168 1832 393 329 37 51 chr9 20213962 20214178 -122057266 - L1MEc LINE L1 -4618 1692 1480 311 289 6 69 chr9 20214348 20214507 -122056937 - HAL1 LINE L1 -899 1608 1460 237 211 18 18 chr9 20214575 20214632 -122056812 - L1MEc LINE L1 -4877 1242 1186 462 318 52 47 chr9 20214654 20215189 -122056255 - L1MEc LINE L1 -5025 1094 557 1970 181 24 3 chr9 20215385 20215767 -122055677 - L1MC1 LINE L1 -11 6322 5933 300 309 85 58 chr9 20215782 20216158 -122055286 - L1MEc LINE L1 -5732 387 2 185 241 123 118 chr9 20216216 20216419 -122055025 - L2 LINE L2 -99 3173 2970 387 21 0 0 chr9 20216627 20216675 -122054769 + L1PA6 LINE L1 6102 6149 -5 30 27 0 0 chr9 20217476 20217513 -122053931 + AT_rich Low_complexity Low_complexity 1 37 0 31510 107 12 59 chr9 20218696 20225151 -122046293 - L1PA7 LINE L1 -15 6139 1 22 0 0 0 chr9 20226235 20226257 -122045187 + AT_rich Low_complexity Low_complexity 1 22 0 185 272 174 11 chr9 20226412 20226504 -122044940 + L2 LINE L2 3139 3245 -27 792 289 34 78 chr9 20226957 20227443 -122044001 - L2 LINE L2 -2 3270 2818 755 232 186 65 chr9 20227450 20227644 -122043800 - L2 LINE L2 -616 2698 2529 1089 177 0 16 chr9 20227644 20227836 -122043608 + MER5A DNA MER1_type 1 189 0 755 232 186 65 chr9 20227836 20227854 -122043590 - L2 LINE L2 -785 2529 2515 1937 140 31 3 chr9 20227854 20228146 -122043298 + AluSx SINE Alu 1 300 -12 755 232 186 65 chr9 20228146 20228302 -122043142 - L2 LINE L2 -799 2515 2284 612 160 0 50 chr9 20228302 20228421 -122043023 - MER44D DNA MER2_type 0 705 593 240 130 182 0 chr9 20228467 20228544 -122042900 - MER44D DNA MER2_type -104 501 411 884 154 6 39 chr9 20228655 20228811 -122042633 - MER44D DNA MER2_type -188 421 1 228 220 0 20 chr9 20228811 20228861 -122042583 - L2 LINE L2 -1029 2285 2237 611 139 35 134 chr9 20230749 20230921 -122040523 + BC200 scRNA scRNA 2 156 -44 413 278 30 0 chr9 20232327 20232460 -122038984 - MER110 LTR ERV1 -28 463 327 2144 119 0 7 chr9 20232659 20232961 -122038483 + AluSx SINE Alu 1 300 -12 276 53 0 0 chr9 20234968 20235006 -122036438 + (TG)n Simple_repeat Simple_repeat 2 39 0 340 364 14 14 chr9 20236099 20236239 -122035205 - MIR3 SINE MIR -65 143 4 244 277 64 21 chr9 20236931 20237025 -122034419 - MIR3 SINE MIR 0 208 111 312 237 0 13 chr9 20237251 20237327 -122034117 - MIR SINE MIR -109 153 79 347 280 11 21 chr9 20237394 20237487 -122033957 - MER5B DNA MER1_type -1 177 86 1925 153 0 0 chr9 20237591 20237885 -122033559 + AluSx SINE Alu 1 294 -18 296 256 58 81 chr9 20237892 20238064 -122033380 + MIR SINE MIR 49 216 -46 194 234 309 21 chr9 20238436 20238530 -122032914 - MIR3 SINE MIR -28 180 60 625 285 86 5 chr9 20238872 20239058 -122032386 + MIR SINE MIR 13 213 -49 3412 5 0 0 chr9 20239060 20239439 -122032005 - L1PA2 LINE L1 -445 5710 5332 3892 20 0 0 chr9 20239442 20239894 -122031550 + L1PA2 LINE L1 5702 6153 -2 21 0 0 0 chr9 20240280 20240301 -122031143 + AT_rich Low_complexity Low_complexity 1 21 0 277 313 60 12 chr9 20240930 20241013 -122030431 - L2 LINE L2 -47 3225 3139 1519 225 38 26 chr9 20241178 20241596 -122029848 - MLT1C LTR MaLR -44 423 1 4116 211 32 35 chr9 20241600 20242550 -122028894 - MLT1C-int LTR MaLR -4 1367 421 1962 159 32 51 chr9 20242554 20242738 -122028706 + THE1B LTR MaLR 1 177 -187 2114 106 0 3 chr9 20242738 20243084 -122028360 + AluY SINE Alu 1 345 0 1962 159 32 51 chr9 20243084 20243269 -122028175 + THE1B LTR MaLR 177 364 0 627 142 0 9 chr9 20243269 20243375 -122028069 + THE1B-int LTR MaLR 1 105 -1475 * 6591 110 8 4 chr9 20243346 20244284 -122027160 + THE1B-int LTR MaLR 640 1580 0 2259 136 28 17 chr9 20244284 20244644 -122026800 + THE1B LTR MaLR 1 364 0 666 229 0 0 chr9 20244651 20244791 -122026653 - MLT1C-int LTR MaLR -958 413 274 1040 209 30 0 chr9 20244792 20244993 -122026451 + MLT2B3 LTR ERVL 1 207 -347 646 191 17 0 chr9 20244994 20245109 -122026335 + MSTD LTR MaLR 241 357 -39 5127 169 5 18 chr9 20245212 20246311 -122025133 + L1P4 LINE L1 4360 5445 -716 * 5582 160 26 1 chr9 20246306 20247769 -122023675 - L1MA4 LINE L1 -59 6241 4745 345 100 0 0 chr9 20247772 20247822 -122023622 + (TA)n Simple_repeat Simple_repeat 2 51 0 1617 139 128 0 chr9 20247822 20248080 -122023364 - AluSx SINE Alu -11 291 1 2454 171 15 4 chr9 20248083 20248562 -122022882 - L1MA4 LINE L1 -1596 4550 4067 40204 41 1 1 chr9 20248663 20253579 -122017865 - L1P LINE L1 -1233 4913 1 356 270 18 9 chr9 20253646 20253757 -122017687 + L3b LINE CR1 1370 1481 -102 422 277 21 21 chr9 20253856 20253997 -122017447 + MIR SINE MIR 66 206 -56 352 290 0 61 chr9 20254184 20254315 -122017129 + 7SK RNA RNA 3 125 -68 31 26 0 0 chr9 20254924 20254962 -122016482 + AT_rich Low_complexity Low_complexity 1 38 0 1798 126 28 0 chr9 20255174 20255428 -122016016 + AluSq SINE Alu 51 311 -2 1920 169 50 0 chr9 20255486 20255829 -122015615 + MER47A DNA MER2_type 7 366 0 762 193 0 15 chr9 20256527 20256662 -122014782 + FLAM_C SINE Alu 1 133 0 2093 131 0 3 chr9 20256977 20257268 -122014176 + AluSx SINE Alu 1 290 -22 368 341 82 0 chr9 20257482 20257617 -122013827 - L2 LINE L2 0 3272 3127 194 109 43 0 chr9 20258654 20258700 -122012744 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 375 23 0 0 chr9 20258838 20258882 -122012562 + (A)n Simple_repeat Simple_repeat 1 44 0 2375 76 7 0 chr9 20259391 20259693 -122011751 + AluY SINE Alu 1 304 -7 2474 54 0 0 chr9 20261016 20261314 -122010130 - AluY SINE Alu -13 298 1 528 285 59 19 chr9 20261756 20262012 -122009432 - L1ME LINE L1 -297 5824 5559 2229 119 0 6 chr9 20262523 20262834 -122008610 + AluSx SINE Alu 1 309 -3 254 235 20 0 chr9 20263104 20263155 -122008289 + MIR3 SINE MIR 106 157 -51 22 80 0 0 chr9 20265170 20265220 -122006224 + AT_rich Low_complexity Low_complexity 1 50 0 211 220 0 20 chr9 20267061 20267111 -122004333 + GA-rich Low_complexity Low_complexity 3 51 0 188 425 0 0 chr9 20267791 20267864 -122003580 + MIR SINE MIR 76 148 -60 40 37 0 0 chr9 20267929 20267983 -122003461 + AT_rich Low_complexity Low_complexity 1 54 0 304 185 0 49 chr9 20268935 20269016 -122002428 - L1ME4a LINE L1 -75 6046 5970 1126 269 0 4 chr9 20270453 20270709 -122000735 + MIR SINE MIR 2 256 -6 396 304 65 18 chr9 20271592 20271760 -121999684 + MIR SINE MIR 53 228 -34 202 250 0 0 chr9 20271780 20271828 -121999616 - MIR SINE MIR -130 132 85 344 254 94 35 chr9 20271852 20272027 -121999417 - MIR SINE MIR -55 207 17 201 312 75 54 chr9 20272901 20272994 -121998450 - MIR3 SINE MIR -100 108 14 245 292 169 0 chr9 20273732 20273821 -121997623 - L2 LINE L2 -5 3267 3164 1786 166 14 56 chr9 20273864 20274220 -121997224 + MER2 DNA MER2_type 1 341 -3 2106 80 47 0 chr9 20274811 20275086 -121996358 + AluY SINE Alu 1 288 -23 289 279 121 6 chr9 20275417 20275582 -121995862 - L1ME4a LINE L1 -3 6118 5935 428 258 47 38 chr9 20275624 20275837 -121995607 - L1ME4a LINE L1 -161 5960 5746 351 44 0 0 chr9 20277230 20277275 -121994169 + (CA)n Simple_repeat Simple_repeat 2 46 0 30 83 0 0 chr9 20277674 20277746 -121993698 + AT_rich Low_complexity Low_complexity 1 72 0 279 283 28 0 chr9 20280014 20280120 -121991324 + (TA)n Simple_repeat Simple_repeat 2 110 0 279 164 0 73 chr9 20280125 20280180 -121991264 - L3 LINE CR1 -97 1480 1430 22 0 0 0 chr9 20285727 20285749 -121985695 + AT_rich Low_complexity Low_complexity 1 22 0 425 234 11 26 chr9 20285925 20286058 -121985386 + MIR SINE MIR 107 236 -26 2080 98 16 26 chr9 20286265 20286571 -121984873 - AluSx SINE Alu -9 303 1 1733 169 3 10 chr9 20288956 20289264 -121982180 - AluJb SINE Alu -6 306 1 6532 199 47 14 chr9 20289375 20291048 -121980396 - L1 LINE L1 -2390 5175 3441 6678 123 7 3 chr9 20291052 20292009 -121979435 - HSMAR1 DNA Mariner 0 1287 327 4178 149 12 0 chr9 20292009 20292740 -121978704 - L1 LINE L1 -1368 4960 4221 2750 197 16 16 chr9 20292739 20293385 -121978059 - L1 LINE L1 -2916 3412 2767 * 2920 260 75 12 chr9 20293484 20294591 -121976853 - L1 LINE L1 -4097 1231 539 1088 306 14 43 chr9 20295048 20295467 -121975977 - L1 LINE L1 -5538 711 305 343 252 19 29 chr9 20295756 20295859 -121975585 + MIR SINE MIR 53 154 -108 370 98 0 0 chr9 20295917 20295968 -121975476 - AluSg/x SINE Alu -113 187 137 390 242 48 32 chr9 20295990 20296114 -121975330 - MIR SINE MIR -31 231 106 320 291 13 13 chr9 20296125 20296204 -121975240 - L2 LINE L2 0 3313 3235 362 296 37 49 chr9 20297600 20297637 -121973807 - MIR3 SINE MIR -28 180 144 195 42 0 0 chr9 20297637 20297661 -121973783 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 362 296 37 49 chr9 20297661 20297785 -121973659 - MIR3 SINE MIR -64 144 21 247 327 18 36 chr9 20299074 20299184 -121972260 + Charlie8 DNA MER1_type 1 108 -2309 35 0 0 0 chr9 20299184 20299219 -121972225 + AT_rich Low_complexity Low_complexity 1 35 0 1137 61 0 0 chr9 20299283 20299415 -121972029 + AluY SINE Alu 1 132 -179 21 0 0 0 chr9 20299415 20299436 -121972008 + AT_rich Low_complexity Low_complexity 1 21 0 391 264 295 5 chr9 20299679 20299872 -121971572 - MIR SINE MIR -12 250 2 340 166 55 43 chr9 20301098 20301261 -121970183 + (TA)n Simple_repeat Simple_repeat 1 165 0 569 286 62 22 chr9 20302573 20302751 -121968693 - MIR SINE MIR -47 215 31 684 67 0 0 chr9 20302754 20302844 -121968600 + (CTATG)n Simple_repeat Simple_repeat 5 94 0 661 193 56 0 chr9 20303096 20303257 -121968187 - L1MB2 LINE L1 -1 6170 6001 2213 90 28 18 chr9 20303287 20303812 -121967632 - LTR10E LTR ERV1 -43 590 3 2176 175 28 13 chr9 20303814 20304278 -121967166 - L1MB2 LINE L1 -172 6008 5538 198 0 0 0 chr9 20306975 20306997 -121964447 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3135 56 0 0 chr9 20306998 20307390 -121964054 - L1PA4 LINE L1 -19 6136 5745 191 268 106 65 chr9 20309222 20309345 -121962099 - MIR SINE MIR -26 236 109 328 229 121 0 chr9 20311832 20311915 -121959529 - L2 LINE L2 0 3313 3221 5693 107 13 27 chr9 20311940 20313304 -121958140 + L1PA12 LINE L1 4799 6164 -4 425 291 167 24 chr9 20313308 20313583 -121957861 - L2 LINE L2 -221 3092 2783 227 397 50 7 chr9 20313771 20313912 -121957532 + MIR SINE MIR 46 192 -70 304 293 50 2 chr9 20314967 20315063 -121956381 + MIR SINE MIR 38 136 -72 345 318 31 31 chr9 20315149 20315344 -121956100 + MER117 DNA MER1_type 3 197 0 195 69 0 0 chr9 20315873 20315902 -121955542 + (T)n Simple_repeat Simple_repeat 1 29 0 40886 35 21 1 chr9 20316445 20322476 -121948968 + L1PA3 LINE L1 2 6155 0 23 0 0 0 chr9 20322476 20322499 -121948945 + AT_rich Low_complexity Low_complexity 1 23 0 5411 146 43 8 chr9 20322586 20324557 -121946887 + L1MA8 LINE L1 4249 6286 -5 322 338 62 31 chr9 20325324 20325484 -121945960 + MIR SINE MIR 18 153 -55 363 343 146 27 chr9 20325619 20326311 -121945133 - L2 LINE L2 -217 3055 2280 26 64 0 0 chr9 20327197 20327244 -121944200 + AT_rich Low_complexity Low_complexity 1 47 0 259 333 9 9 chr9 20330449 20330560 -121940884 + GA-rich Low_complexity Low_complexity 5 115 0 344 118 15 0 chr9 20331937 20332005 -121939439 + (TA)n Simple_repeat Simple_repeat 1 69 0 2244 105 10 3 chr9 20332005 20332299 -121939145 - AluSg SINE Alu -14 296 1 1496 165 75 0 chr9 20332309 20332575 -121938869 - AluJb SINE Alu -26 286 1 422 256 44 44 chr9 20332732 20332892 -121938552 + MIR SINE MIR 97 256 -6 2041 114 7 24 chr9 20333246 20333544 -121937900 - AluSg SINE Alu -16 294 2 406 297 20 0 chr9 20334158 20334259 -121937185 - L2 LINE L2 -5 3267 3165 25 0 0 0 chr9 20335341 20335366 -121936078 + AT_rich Low_complexity Low_complexity 1 25 0 318 270 135 9 chr9 20335583 20335694 -121935750 + L2 LINE L2 2394 2518 -796 596 264 0 0 chr9 20335702 20335850 -121935594 + HsTC2 DNA Tc2 1 148 -1750 * 837 208 39 26 chr9 20335843 20336074 -121935370 + HsTC2 DNA Tc2 1261 1494 -404 2787 264 26 16 chr9 20336074 20336912 -121934532 + L1MC/D LINE L1 36 882 -5514 5019 243 39 17 chr9 20336976 20337831 -121933613 + L1MC/D LINE L1 3579 4414 -1882 921 193 23 29 chr9 20337831 20338002 -121933442 + FAM SINE Alu 1 170 -5 5019 243 39 17 chr9 20338002 20338978 -121932466 + L1MC/D LINE L1 4414 5454 -842 1256 211 106 81 chr9 20338978 20339471 -121931973 + MLT1D LTR MaLR 1 505 0 5019 243 39 17 chr9 20339471 20339574 -121931870 + L1MC/D LINE L1 5454 5553 -743 1814 162 0 21 chr9 20339574 20340050 -121931394 + AluJb SINE Alu 1 470 0 840 311 157 25 chr9 20340064 20340721 -121930723 + L2 LINE L2 2532 3309 -4 24 0 0 0 chr9 20342650 20342674 -121928770 + AT_rich Low_complexity Low_complexity 1 24 0 699 279 67 0 chr9 20343386 20343594 -121927850 + MIR SINE MIR 19 240 -22 2120 129 10 6 chr9 20343659 20343970 -121927474 + AluSx SINE Alu 1 312 0 428 297 0 16 chr9 20345054 20345182 -121926262 + L2 LINE L2 3187 3312 -1 396 0 0 0 chr9 20345253 20345297 -121926147 + (TG)n Simple_repeat Simple_repeat 1 44 0 257 228 268 8 chr9 20345368 20345491 -121925953 - MIR SINE MIR -43 219 65 460 290 74 68 chr9 20346416 20346726 -121924718 - L2 LINE L2 -16 3297 2986 207 0 0 0 chr9 20346815 20346838 -121924606 + (A)n Simple_repeat Simple_repeat 1 23 0 468 272 73 7 chr9 20347720 20347856 -121923588 + L2 LINE L2 2934 3078 -194 662 239 190 81 chr9 20347895 20348338 -121923106 + MLT1J LTR MaLR 1 491 -20 213 238 0 0 chr9 20348585 20348627 -121922817 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1640 167 8 0 chr9 20350530 20350788 -121920656 + AluSq SINE Alu 2 261 -52 234 0 0 0 chr9 20351084 20351110 -121920334 + (T)n Simple_repeat Simple_repeat 1 26 0 43588 34 24 1 chr9 20351653 20357709 -121913735 + L1PA3 LINE L1 2 6155 0 1861 148 3 57 chr9 20359746 20360077 -121911367 - AluSq SINE Alu 0 313 1 197 303 76 0 chr9 20360534 20360600 -121910844 - L3b LINE CR1 -88 1495 1425 638 301 40 10 chr9 20360649 20360848 -121910596 + MIR SINE MIR 58 262 0 2140 106 30 13 chr9 20360915 20361216 -121910228 + AluSx SINE Alu 1 306 -6 405 295 83 13 chr9 20363476 20363632 -121907812 + MIR3 SINE MIR 35 201 -7 277 343 0 0 chr9 20365053 20365126 -121906318 + L2 LINE L2 3200 3272 0 2454 74 0 0 chr9 20365323 20365619 -121905825 - AluY SINE Alu -15 296 1 310 223 0 64 chr9 20366165 20366259 -121905185 - HAL1b LINE L1 -91 1257 1170 251 283 43 11 chr9 20366395 20366487 -121904957 + MIR SINE MIR 61 155 -107 1766 162 3 30 chr9 20366636 20366938 -121904506 + AluJb SINE Alu 3 296 -16 2072 130 0 0 chr9 20368211 20368545 -121902899 + AluSx SINE Alu 1 334 0 293 335 112 23 chr9 20368942 20369353 -121902091 - L2 LINE L2 -78 3194 2681 232 242 0 16 chr9 20369614 20369676 -121901768 + MIR3 SINE MIR 145 205 -3 350 222 89 22 chr9 20370042 20370132 -121901312 - L2 LINE L2 -5 3267 3172 380 258 79 53 chr9 20371654 20371694 -121899750 + MIR SINE MIR 55 92 -170 2143 131 52 120 chr9 20371694 20371764 -121899680 - MSTA LTR MaLR 0 428 355 1713 149 4 0 chr9 20371764 20372012 -121899432 + AluJb SINE Alu 3 251 -61 2143 131 52 120 chr9 20372012 20372400 -121899044 - MSTA LTR MaLR -73 355 1 380 258 79 53 chr9 20372400 20372549 -121898895 + MIR SINE MIR 92 249 -13 195 184 0 53 chr9 20373088 20373164 -121898280 + GA-rich Low_complexity Low_complexity 1 72 0 454 325 94 9 chr9 20373258 20373470 -121897974 - MIR SINE MIR -2 260 31 196 256 81 47 chr9 20373551 20373637 -121897807 - L2 LINE L2 -38 3275 3187 464 281 176 10 chr9 20374427 20374626 -121896818 + MIR SINE MIR 19 250 -12 211 265 143 118 chr9 20374893 20375138 -121896306 - L2 LINE L2 -10 3262 3012 817 125 0 0 chr9 20376152 20376264 -121895180 - AluJb SINE Alu 0 312 201 21 0 0 0 chr9 20376306 20376327 -121895117 + AT_rich Low_complexity Low_complexity 1 21 0 2438 98 0 0 chr9 20377450 20377757 -121893687 + AluSp SINE Alu 1 307 -6 196 332 33 10 chr9 20378116 20378216 -121893228 - MIR SINE MIR -48 160 59 897 225 38 10 chr9 20378279 20378488 -121892956 + MIR SINE MIR 12 226 -36 946 226 77 14 chr9 20379390 20379611 -121891833 + MIR SINE MIR 28 262 0 357 259 48 88 chr9 20379611 20379758 -121891686 - MIR SINE MIR -100 162 22 314 141 0 16 chr9 20380282 20380346 -121891098 + (TG)n Simple_repeat Simple_repeat 2 64 0 2165 121 3 10 chr9 20380876 20381190 -121890254 - AluSx SINE Alu 0 312 1 500 374 116 14 chr9 20381269 20381563 -121889881 + L2 LINE L2 2949 3272 0 686 285 115 12 chr9 20381977 20382230 -121889214 - MLT1B LTR MaLR 0 467 189 1072 161 24 29 chr9 20382458 20382663 -121888781 - MLT1B LTR MaLR -186 204 1 301 269 77 39 chr9 20384421 20384551 -121886893 + MIR SINE MIR 88 222 -40 188 0 0 0 chr9 20384925 20384948 -121886496 - L2 LINE L2 -7 3265 3243 619 304 84 17 chr9 20384966 20385203 -121886241 - MIR SINE MIR -1 261 9 4561 216 83 9 chr9 20385209 20386284 -121885160 - L1MC4 LINE L1 -431 7611 6458 191 333 10 42 chr9 20386531 20386627 -121884817 - L2 LINE L2 -560 2754 2662 21 0 0 0 chr9 20387188 20387209 -121884235 + AT_rich Low_complexity Low_complexity 1 21 0 576 245 97 7 chr9 20387579 20387734 -121883710 + MIR SINE MIR 35 203 -59 404 286 75 12 chr9 20387943 20388104 -121883340 + MIR SINE MIR 92 262 0 931 290 38 9 chr9 20388716 20389033 -121882411 - MER46C DNA MER2_type -6 332 7 431 337 98 62 chr9 20389128 20389182 -121882262 - L2 LINE L2 -22 3250 3199 2202 190 53 22 chr9 20389182 20389635 -121881809 - MLT1C LTR MaLR 0 467 1 431 337 98 62 chr9 20389635 20389856 -121881588 - L2 LINE L2 -73 3199 2965 1790 203 90 15 chr9 20390555 20391022 -121880422 - L1ME3A LINE L1 -5 6165 5664 2065 215 108 21 chr9 20391043 20391560 -121879884 - MLT1F1 LTR MaLR 0 567 6 588 266 53 39 chr9 20391736 20391943 -121879501 + MIR SINE MIR 1 210 -52 1103 192 56 23 chr9 20394153 20394367 -121877077 + MER58A DNA MER1_type 1 221 -3 316 167 0 0 chr9 20394623 20394671 -121876773 - MER94 DNA DNA -83 51 4 238 261 29 14 chr9 20395056 20395125 -121876319 - MIR SINE MIR -77 185 116 300 305 183 0 chr9 20395205 20395336 -121876108 - MIR3 SINE MIR -26 182 28 820 194 5 57 chr9 20395770 20395887 -121875557 + L1MB8 LINE L1 5977 6080 -98 1736 155 28 7 chr9 20395887 20396178 -121875266 - AluJo SINE Alu -15 297 1 820 194 5 57 chr9 20396178 20396271 -121875173 + L1MB8 LINE L1 6080 6176 -2 3519 117 35 8 chr9 20396279 20396794 -121874650 + L1PA14 LINE L1 5631 6159 -2 399 210 40 20 chr9 20396808 20396908 -121874536 + L1MB7 LINE L1 6071 6172 -12 2372 111 0 0 chr9 20397769 20398076 -121873368 - AluSq SINE Alu -4 309 3 963 282 16 0 chr9 20399688 20399943 -121871501 - MIR SINE MIR 0 262 4 650 266 48 19 chr9 20400341 20400558 -121870886 - MIR SINE MIR -11 251 31 303 286 175 32 chr9 20401821 20401975 -121869469 + MIR3 SINE MIR 8 183 -25 235 315 120 37 chr9 20402521 20402629 -121868815 + L2 LINE L2 3192 3308 -5 1862 168 0 25 chr9 20403235 20403550 -121867894 + AluSx SINE Alu 1 307 -5 1457 178 16 0 chr9 20403742 20403995 -121867449 - AluJo SINE Alu 0 312 56 218 392 10 10 chr9 20406562 20406659 -121864785 - MIR3 SINE MIR -101 107 11 281 232 110 50 chr9 20407857 20407988 -121863456 + MIR SINE MIR 36 184 -62 1117 180 34 56 chr9 20408693 20408960 -121862484 + MIR SINE MIR 1 261 -1 218 315 198 0 chr9 20409572 20409683 -121861761 - MIR SINE MIR -71 191 59 763 181 84 101 chr9 20410356 20410583 -121860861 + MER58A DNA MER1_type 2 224 0 336 266 108 36 chr9 20411680 20411819 -121859625 - MIR SINE MIR -104 158 10 512 172 172 108 chr9 20412962 20413001 -121858443 + MIR SINE MIR 37 72 -190 2220 98 0 3 chr9 20413001 20413288 -121858156 - AluSc SINE Alu -18 291 6 512 172 172 108 chr9 20413288 20413451 -121857993 + MIR SINE MIR 72 252 -10 205 200 0 0 chr9 20413767 20413807 -121857637 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 259 268 114 82 chr9 20413992 20414298 -121857146 - L2 LINE L2 -338 2976 2661 689 169 66 0 chr9 20414298 20414434 -121857010 - MER58C DNA MER1_type 0 215 71 446 169 12 12 chr9 20414450 20414533 -121856911 + MIR SINE MIR 45 127 -135 284 295 102 42 chr9 20414686 20414852 -121856592 + MER5A DNA MER1_type 3 178 -11 732 314 104 21 chr9 20415049 20415579 -121855865 + L2 LINE L2 2609 3192 -121 291 309 280 16 chr9 20415573 20415816 -121855628 - L2 LINE L2 -1 3312 3006 * 183 324 120 37 chr9 20415818 20415926 -121855518 + L2 LINE L2 3156 3272 0 357 290 89 0 chr9 20415969 20416093 -121855351 + L2 LINE L2 3137 3271 -1 249 253 11 35 chr9 20417184 20417271 -121854173 - MER103 DNA DNA -1 165 81 276 320 10 0 chr9 20417867 20417964 -121853480 - MIR3 SINE MIR -24 184 87 451 272 118 35 chr9 20418583 20418811 -121852633 + MIR SINE MIR 16 262 0 245 280 140 47 chr9 20418955 20419148 -121852296 + MIR SINE MIR 31 241 -21 376 289 163 0 chr9 20419352 20419518 -121851926 + MIR SINE MIR 58 250 -12 21 57 0 0 chr9 20420945 20420980 -121850464 + AT_rich Low_complexity Low_complexity 1 35 0 231 230 70 110 chr9 20421067 20421167 -121850277 - MIR SINE MIR -86 176 81 187 337 43 11 chr9 20421842 20421934 -121849510 + L2 LINE L2 3215 3309 -4 858 245 95 126 chr9 20422319 20422682 -121848762 + L2 LINE L2 2220 2558 -756 2247 155 5 37 chr9 20422682 20423057 -121848387 + MLT1A1 LTR MaLR 1 363 -2 858 245 95 126 chr9 20423057 20423314 -121848130 + L2 LINE L2 2558 2821 -493 243 234 39 52 chr9 20423362 20423439 -121848005 - L2 LINE L2 0 3313 3238 816 290 128 32 chr9 20423458 20423834 -121847610 + L2 LINE L2 2826 3237 -76 240 388 41 6 chr9 20424892 20425062 -121846382 + L2 LINE L2 2860 3035 -237 7253 126 34 10 chr9 20425062 20425622 -121845822 + L1MA1 LINE L1 4129 4674 -1628 231 36 0 0 chr9 20425622 20425650 -121845794 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7253 126 34 10 chr9 20425650 20427212 -121844232 + L1MA1 LINE L1 4674 6300 -2 418 278 78 9 chr9 20427387 20427502 -121843942 + L2 LINE L2 3148 3270 -2 509 314 124 23 chr9 20428496 20428754 -121842690 - L2 LINE L2 0 3272 2989 240 200 33 125 chr9 20429069 20429189 -121842255 - MER103 DNA DNA -2 164 56 234 249 28 77 chr9 20429326 20429507 -121841937 + (TTTG)n Simple_repeat Simple_repeat 1 172 0 2291 192 72 11 chr9 20430904 20431379 -121840065 + MLT1D LTR MaLR 2 505 0 565 232 28 14 chr9 20431651 20431793 -121839651 + MIR SINE MIR 96 239 -23 234 0 0 0 chr9 20432401 20432427 -121839017 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1482 129 9 0 chr9 20433421 20433603 -121837841 - AluSg/x SINE Alu -3 307 121 423 0 0 0 chr9 20433603 20433650 -121837794 + (TA)n Simple_repeat Simple_repeat 1 47 0 1482 129 9 0 chr9 20433650 20433684 -121837760 - AluSg/x SINE Alu -189 121 89 257 230 10 50 chr9 20433694 20433794 -121837650 + L1ME4a LINE L1 5984 6079 -42 216 214 0 0 chr9 20434497 20434539 -121836905 + MER5B DNA MER1_type 2 43 -135 611 199 8 15 chr9 20434585 20434716 -121836728 - MER5B DNA MER1_type -48 130 1 1382 248 117 30 chr9 20435050 20435513 -121835931 - MLT1J LTR MaLR -4 507 5 252 0 0 0 chr9 20437317 20437345 -121834099 + (T)n Simple_repeat Simple_repeat 1 28 0 791 239 45 45 chr9 20437958 20438201 -121833243 + MIR SINE MIR 1 243 -19 186 324 127 14 chr9 20438912 20438983 -121832461 - MIR3 SINE MIR -17 191 113 256 297 27 14 chr9 20439165 20439239 -121832205 - MIR3 SINE MIR -49 159 85 230 83 0 0 chr9 20440109 20440145 -121831299 - L1MA10 LINE L1 -1 6333 6298 * 235 128 0 0 chr9 20440116 20440155 -121831289 - L1MB7 LINE L1 -10 6174 6136 * 2422 191 19 13 chr9 20440153 20440624 -121830820 - L1MB7 LINE L1 -303 5881 5408 191 374 66 0 chr9 20440658 20440749 -121830695 + L2 LINE L2 3144 3240 -32 216 281 146 42 chr9 20440898 20440994 -121830450 - MIR SINE MIR -134 128 23 203 313 16 31 chr9 20442122 20442250 -121829194 + CT-rich Low_complexity Low_complexity 2 127 0 297 247 99 0 chr9 20443068 20443149 -121828295 - MIR3 SINE MIR -9 199 111 1510 166 28 3 chr9 20443300 20443583 -121827861 - L1MA4 LINE L1 -11 6289 6000 23 0 0 0 chr9 20444222 20444245 -121827199 + AT_rich Low_complexity Low_complexity 1 23 0 276 242 16 0 chr9 20444872 20444934 -121826510 + MIR SINE MIR 13 75 -187 6626 32 1 1 chr9 20444943 20445714 -121825730 - L1PA3 LINE L1 -3 6152 5382 231 275 220 0 chr9 20445767 20445858 -121825586 + MIR SINE MIR 41 151 -111 2516 102 17 14 chr9 20445999 20446351 -121825093 - THE1A LTR MaLR 0 355 3 8665 83 25 20 chr9 20446353 20447443 -121824001 - THE1A-int LTR MaLR 0 1580 482 2431 63 13 0 chr9 20447443 20447743 -121823701 - L1PA7 LINE L1 0 6154 5851 8665 83 25 20 chr9 20447743 20447830 -121823614 - THE1A-int LTR MaLR -1098 482 397 5057 82 1 59 chr9 20448135 20448865 -121822579 - LTR12 LTR ERV1 0 688 1 808 228 19 102 chr9 20449556 20449881 -121821563 + L3 LINE CR1 468 765 -812 1305 145 13 31 chr9 20449886 20450114 -121821330 + AluJb SINE Alu 7 230 -82 936 303 150 22 chr9 20450235 20450832 -121820612 + L3 LINE CR1 754 1458 -119 1829 147 10 10 chr9 20450832 20451139 -121820305 - AluSx SINE Alu -5 307 1 936 303 150 22 chr9 20451139 20451255 -121820189 + L3 LINE CR1 1458 1558 -19 2379 99 3 0 chr9 20451452 20451756 -121819688 - AluSp SINE Alu -7 306 2 1898 188 0 0 chr9 20452390 20452699 -121818745 - AluJb SINE Alu -3 309 1 316 263 94 64 chr9 20452880 20453051 -121818393 - LTR67 LTR ERVL 0 557 382 823 208 39 6 chr9 20453233 20453411 -121818033 - MLT1B LTR MaLR -206 184 1 842 103 0 0 chr9 20453611 20453718 -121817726 - AluSp/q SINE Alu -19 294 188 1572 138 5 0 chr9 20453718 20453936 -121817508 - AluSp SINE Alu -94 219 1 1804 65 0 0 chr9 20453943 20454172 -121817272 - L1PA8 LINE L1 -4 6168 5940 238 250 77 0 chr9 20455503 20455607 -121815837 + MIR3 SINE MIR 91 202 -6 2051 148 3 0 chr9 20456634 20456938 -121814506 + AluSq SINE Alu 1 305 -8 363 239 99 24 chr9 20456943 20457113 -121814331 - L1MC5 LINE L1 -44 7917 7726 1743 174 101 0 chr9 20457113 20457429 -121814015 - MER7A DNA MER2_type 0 346 1 363 239 99 24 chr9 20457429 20457471 -121813973 - L1MC5 LINE L1 -235 7726 7689 * 1484 195 46 20 chr9 20457436 20457785 -121813659 + L1 LINE L1 3890 4247 -1899 13091 150 23 24 chr9 20457813 20460093 -121811351 + L1P LINE L1 11 2288 -3858 1464 197 34 50 chr9 20460113 20461420 -121810024 + SVA Other Other 432 866 -520 27 0 0 0 chr9 20461530 20461557 -121809887 + AT_rich Low_complexity Low_complexity 1 27 0 22929 74 28 5 chr9 20461557 20462221 -121809223 + L1PA6 LINE L1 2273 2920 -3234 2344 82 10 0 chr9 20462221 20462514 -121808930 + AluY SINE Alu 1 296 -15 22929 74 28 5 chr9 20462514 20465717 -121805727 + L1PA6 LINE L1 2920 6153 -1 1921 204 48 20 chr9 20465743 20466239 -121805205 + L1 LINE L1 4256 4765 -1381 837 179 0 0 chr9 20467006 20467140 -121804304 - FRAM SINE Alu -37 139 6 374 280 93 20 chr9 20468030 20468180 -121803264 + MIR SINE MIR 90 250 -12 1855 155 3 10 chr9 20468822 20469126 -121802318 - AluSx SINE Alu -9 303 2 380 326 27 74 chr9 20469247 20469505 -121801939 + MIR SINE MIR 5 250 -12 1402 131 0 0 chr9 20469763 20469962 -121801482 + AluSg/x SINE Alu 104 302 -10 2333 92 0 3 chr9 20469972 20470267 -121801177 + AluSc SINE Alu 7 300 -9 235 100 40 0 chr9 20470268 20470318 -121801126 + L1MB3 LINE L1 6132 6183 0 1313 210 30 88 chr9 20470550 20470874 -121800570 + MER58B DNA MER1_type 1 303 -2117 1891 138 13 33 chr9 20470874 20471178 -121800266 - AluJb SINE Alu -14 298 1 1313 210 30 88 chr9 20471178 20471215 -121800229 + MER58B DNA MER1_type 303 341 0 259 268 0 28 chr9 20471469 20471540 -121799904 + MLT1J LTR MaLR 1 69 -442 27 0 0 0 chr9 20471950 20471977 -121799467 + AT_rich Low_complexity Low_complexity 1 27 0 3555 119 24 53 chr9 20472255 20472874 -121798570 + Tigger1 DNA MER2_type 1320 1920 -498 1787 133 83 42 chr9 20472874 20473234 -121798210 + THE1C LTR MaLR 1 375 0 207 284 138 17 chr9 20473267 20473383 -121798061 + L2 LINE L2 2948 3077 -195 246 256 93 2 chr9 20474454 20474567 -121796877 + MIR SINE MIR 17 137 -71 459 283 56 17 chr9 20475056 20475236 -121796208 - MER5A DNA MER1_type 0 189 3 1439 198 0 26 chr9 20475304 20475438 -121796006 + AluJo SINE Alu 3 128 -184 2124 143 3 0 chr9 20475438 20475745 -121795699 + AluSx SINE Alu 1 308 -4 1439 198 0 26 chr9 20475745 20475883 -121795561 + AluJo SINE Alu 128 268 -44 36 0 0 0 chr9 20476566 20476602 -121794842 + AT_rich Low_complexity Low_complexity 1 36 0 2132 108 7 3 chr9 20476603 20476900 -121794544 - AluSq SINE Alu -13 300 3 290 250 162 40 chr9 20477191 20477234 -121794210 + Charlie8 DNA MER1_type 78 114 -2303 2446 98 0 0 chr9 20477234 20477540 -121793904 + AluSx SINE Alu 1 306 -6 290 250 162 40 chr9 20477540 20477644 -121793800 + Charlie8 DNA MER1_type 114 243 -2174 326 0 0 0 chr9 20477883 20477918 -121793526 + U2 snRNA snRNA 1 35 -153 2491 75 0 0 chr9 20478938 20479231 -121792213 + AluSc SINE Alu 2 294 -15 342 252 199 8 chr9 20480088 20480219 -121791225 + MIR SINE MIR 106 261 -1 1960 156 0 7 chr9 20480952 20481254 -121790190 + AluJb SINE Alu 1 300 -12 225 0 0 0 chr9 20482030 20482055 -121789389 + (CA)n Simple_repeat Simple_repeat 1 25 0 266 312 35 28 chr9 20482440 20482581 -121788863 - MIR SINE MIR -55 207 66 658 226 15 15 chr9 20482896 20483029 -121788415 + AluJb SINE Alu 135 267 -45 2945 102 41 12 chr9 20483046 20483449 -121787995 + MER1A DNA MER1_type 1 391 -2311 1935 140 0 11 chr9 20483449 20483728 -121787716 + AluSx SINE Alu 1 276 -36 3638 70 0 6 chr9 20483728 20484199 -121787245 + L1PA6 LINE L1 5681 6148 -6 1702 148 33 13 chr9 20484397 20484700 -121786744 + AluSx SINE Alu 2 310 -2 366 199 320 17 chr9 20484741 20484922 -121786522 + MIR SINE MIR 9 244 -18 619 261 48 34 chr9 20484997 20485070 -121786374 - MIR SINE MIR -27 235 165 1764 167 13 30 chr9 20485070 20485375 -121786069 - AluJo SINE Alu -12 300 1 619 261 48 34 chr9 20485375 20485508 -121785936 - MIR SINE MIR -97 165 26 429 298 95 0 chr9 20487916 20488084 -121783360 - MIR SINE MIR -78 184 1 2135 101 31 0 chr9 20488218 20488505 -121782939 - AluSx SINE Alu -16 296 1 237 150 350 0 chr9 20488686 20488746 -121782698 - HAL1 LINE L1 -541 1966 1886 1232 239 172 29 chr9 20488756 20489303 -121782141 - HAL1 LINE L1 -688 1819 1195 1154 137 0 16 chr9 20489306 20489474 -121781970 - AluSg/x SINE Alu -12 297 131 2135 136 0 0 chr9 20489474 20489783 -121781661 - AluSx SINE Alu -3 309 1 1154 137 0 16 chr9 20489783 20489797 -121781647 - AluSg/x SINE Alu -178 131 118 914 144 11 58 chr9 20489803 20489967 -121781477 - AluJo SINE Alu -14 298 143 2354 81 3 23 chr9 20489967 20490274 -121781170 - AluSp SINE Alu -12 301 1 914 144 11 58 chr9 20490274 20490297 -121781147 - AluJo SINE Alu -169 143 120 2120 224 108 108 chr9 20490305 20490584 -121780860 - HAL1 LINE L1 -1326 1181 903 1497 82 34 5 chr9 20490584 20490792 -121780652 - AluSp SINE Alu -10 303 90 2120 224 108 108 chr9 20490792 20491340 -121780104 - HAL1 LINE L1 -1604 903 356 3016 6 0 0 chr9 20491340 20491658 -121779786 - AluYb8 SINE Alu 0 318 1 2120 224 108 108 chr9 20491658 20491815 -121779629 - HAL1 LINE L1 -2151 356 200 2422 52 3 3 chr9 20491815 20492102 -121779342 - AluY SINE Alu -21 290 4 2120 224 108 108 chr9 20492102 20492285 -121779159 - HAL1 LINE L1 -2306 201 12 7305 128 9 16 chr9 20492383 20492536 -121778908 - L1MA2 LINE L1 0 6304 6151 2139 118 21 0 chr9 20492536 20492824 -121778620 - AluSx SINE Alu -18 294 1 7305 128 9 16 chr9 20492824 20492907 -121778537 - L1MA2 LINE L1 -153 6151 6069 1927 159 0 3 chr9 20492907 20493202 -121778242 - AluJb SINE Alu -18 294 1 7305 128 9 16 chr9 20493202 20493501 -121777943 - L1MA2 LINE L1 -235 6069 5769 1866 169 0 10 chr9 20493501 20493797 -121777647 - AluJb SINE Alu -19 293 1 2181 128 3 0 chr9 20493800 20494106 -121777338 - AluSp SINE Alu -6 307 1 7305 128 9 16 chr9 20494106 20495723 -121775721 - L1MA2 LINE L1 -537 5767 4161 761 257 67 4 chr9 20495746 20496015 -121775429 - L1ME1 LINE L1 0 6178 5872 1785 153 0 4 chr9 20496022 20496290 -121775154 - AluSx SINE Alu -9 303 37 2223 110 0 0 chr9 20496658 20496949 -121774495 + AluSq SINE Alu 1 291 -22 560 184 0 0 chr9 20497427 20497530 -121773914 - L1M4 LINE L1 -2298 3848 3746 471 99 0 0 chr9 20497530 20497601 -121773843 - Alu SINE Alu -8 304 234 23 0 0 0 chr9 20497835 20497858 -121773586 + AT_rich Low_complexity Low_complexity 1 23 0 6755 36 3 0 chr9 20497917 20498727 -121772717 - L1PA3 LINE L1 0 6155 5335 202 275 220 0 chr9 20498743 20498834 -121772610 + MIR SINE MIR 41 151 -111 2377 102 17 14 chr9 20498975 20499327 -121772117 - THE1A LTR MaLR 0 355 3 2926 73 8 5 chr9 20499329 20499710 -121771734 - THE1A-int LTR MaLR 0 1580 1199 2592 86 6 0 chr9 20499810 20500159 -121771285 - THE1A-int LTR MaLR -1229 351 1 2137 108 72 12 chr9 20500159 20500494 -121770950 - THE1A LTR MaLR 0 355 1 461 195 0 0 chr9 20501058 20501140 -121770304 - MER58 DNA MER1_type -2 2418 2337 690 222 102 0 chr9 20501164 20501331 -121770113 - MER58 DNA MER1_type -156 185 2 811 213 46 0 chr9 20501735 20501909 -121769535 + MER5A DNA MER1_type 3 184 -5 247 297 230 0 chr9 20503534 20503682 -121767762 + MIR SINE MIR 74 255 -7 272 217 14 14 chr9 20503805 20503874 -121767570 + MER5B DNA MER1_type 2 70 -108 391 182 104 0 chr9 20503979 20504056 -121767388 - L1MEc LINE L1 -5715 681 597 1946 111 7 4 chr9 20504069 20504348 -121767096 - AluSx SINE Alu -13 299 20 1026 236 138 15 chr9 20504450 20504857 -121766587 - L1MC4 LINE L1 -1119 6923 6467 241 224 118 0 chr9 20506481 20506557 -121764887 + MIR SINE MIR 175 259 -3 191 270 108 0 chr9 20509301 20509375 -121762069 - L2 LINE L2 -5 3267 3186 2271 120 0 0 chr9 20510123 20510424 -121761020 + AluSq SINE Alu 1 301 -12 873 159 0 0 chr9 20510672 20510804 -121760640 + AluJb SINE Alu 1 132 -180 30604 123 21 66 chr9 20510804 20516396 -121755048 + L1P LINE L1 3 5344 -802 6599 50 40 18 chr9 20516396 20516649 -121754795 + L1PA7 LINE L1 5162 5408 -746 2274 126 0 0 chr9 20516649 20516959 -121754485 + AluSp SINE Alu 1 310 -3 6599 50 40 18 chr9 20516959 20517676 -121753768 + L1PA7 LINE L1 5408 6152 -2 980 164 0 34 chr9 20517677 20517854 -121753590 + AluJb SINE Alu 132 302 -10 766 227 21 41 chr9 20517967 20518209 -121753235 - L1ME2 LINE L1 -35 6129 5893 1712 163 7 18 chr9 20518222 20518504 -121752940 - AluJb SINE Alu -16 296 18 2065 135 0 0 chr9 20519228 20519517 -121751927 - AluSq SINE Alu -13 300 12 241 326 22 0 chr9 20520343 20520432 -121751012 - MER117 DNA MER1_type -66 131 41 2002 147 0 0 chr9 20520583 20520875 -121750569 - AluSx SINE Alu -20 292 1 274 264 164 0 chr9 20521593 20521703 -121749741 + MIR3 SINE MIR 68 195 -13 565 297 59 14 chr9 20522016 20522238 -121749206 + MIR SINE MIR 18 249 -13 473 301 57 0 chr9 20522294 20522470 -121748974 - MIR SINE MIR -67 195 10 1852 149 3 36 chr9 20522768 20523077 -121748367 + AluJo SINE Alu 2 300 -12 1263 121 61 103 chr9 20523558 20523802 -121747642 + MER33 DNA MER1_type 1 229 -2356 901 183 55 0 chr9 20523802 20523966 -121747478 - FAM SINE Alu -2 173 1 1263 121 61 103 chr9 20523966 20524051 -121747393 + MER33 DNA MER1_type 229 316 -8 190 337 0 50 chr9 20524279 20524380 -121747064 + MIR3 SINE MIR 107 202 -6 1939 166 0 0 chr9 20524380 20524675 -121746769 + AluJb SINE Alu 1 295 -17 194 306 0 42 chr9 20527431 20527503 -121743941 - L2 LINE L2 -250 3063 2995 1176 196 5 0 chr9 20529550 20529754 -121741690 - AluJo SINE Alu -20 292 88 21 0 0 0 chr9 20531769 20531790 -121739654 + AT_rich Low_complexity Low_complexity 1 21 0 1859 251 90 66 chr9 20532019 20532711 -121738733 - L1ME LINE L1 -5046 1024 303 2350 103 3 0 chr9 20532711 20533022 -121738422 - AluSp SINE Alu -1 312 1 1859 251 90 66 chr9 20533022 20533265 -121738179 - L1ME LINE L1 -5767 303 67 1250 229 45 30 chr9 20537472 20537808 -121733636 + MER58B DNA MER1_type 1 341 0 712 217 152 23 chr9 20537916 20538133 -121733311 - L1ME3A LINE L1 -12 6158 5914 275 279 168 60 chr9 20539341 20539639 -121731805 + L2 LINE L2 2866 3195 -77 432 97 0 0 chr9 20540149 20540211 -121731233 + (CA)n Simple_repeat Simple_repeat 2 63 0 2166 142 58 31 chr9 20540358 20540775 -121730669 + MSTA LTR MaLR 1 428 0 1515 216 30 49 chr9 20541122 20541492 -121729952 - MLT1A1 LTR MaLR -2 363 1 439 290 27 27 chr9 20542878 20543099 -121728345 + L1MB7 LINE L1 22 242 -6300 271 268 25 109 chr9 20543265 20543504 -121727940 + L1MB7 LINE L1 497 715 -5827 2550 244 88 49 chr9 20543622 20543803 -121727641 + L1MB7 LINE L1 716 888 -5756 1485 127 100 63 chr9 20543803 20544102 -121727342 + AluSq SINE Alu 1 310 -3 2550 244 88 49 chr9 20544102 20544943 -121726501 + L1MB7 LINE L1 888 1851 -4793 2426 56 0 3 chr9 20544943 20545252 -121726192 - AluY SINE Alu 0 308 1 2550 244 88 49 chr9 20545252 20545599 -121725845 + L1MB7 LINE L1 1851 2183 -4461 4964 219 58 40 chr9 20545655 20548000 -121723444 + L1MB7 LINE L1 4298 6673 -9 2501 67 3 0 chr9 20548218 20548516 -121722928 + AluSp SINE Alu 1 299 -14 585 279 48 22 chr9 20548913 20549142 -121722302 + MIR SINE MIR 20 254 -8 641 298 66 0 chr9 20549150 20549378 -121722066 + MIR SINE MIR 8 250 -12 314 286 12 0 chr9 20552488 20552572 -121718872 - MIR SINE MIR -87 121 37 455 281 25 59 chr9 20552725 20552963 -121718481 - HAL1 LINE L1 0 2507 2278 2259 69 0 0 chr9 20553240 20553514 -121717930 + AluY SINE Alu 37 310 -1 368 256 163 37 chr9 20553667 20553882 -121717562 + MIR SINE MIR 10 251 -11 23 54 0 0 chr9 20553983 20554020 -121717424 + AT_rich Low_complexity Low_complexity 1 37 0 1965 87 4 15 chr9 20555959 20556224 -121715220 - AluY SINE Alu -7 304 43 693 191 7 7 chr9 20557980 20558116 -121713328 - MER103 DNA DNA 0 166 31 492 218 49 56 chr9 20558147 20558289 -121713155 - MLT1K LTR MaLR -53 535 395 838 290 37 65 chr9 20558316 20558640 -121712804 - MLT1K LTR MaLR -263 325 11 248 240 130 10 chr9 20559032 20559132 -121712312 - MIR SINE MIR -70 192 81 369 43 0 0 chr9 20559356 20559403 -121712041 + (TG)n Simple_repeat Simple_repeat 1 47 0 516 95 0 0 chr9 20560195 20560279 -121711165 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 604 258 87 110 chr9 20560319 20561198 -121710246 - L2 LINE L2 0 3313 2387 26 30 0 0 chr9 20561782 20561815 -121709629 + AT_rich Low_complexity Low_complexity 1 33 0 1081 172 98 130 chr9 20562764 20563141 -121708303 - MLT1A1 LTR MaLR 0 365 1 240 309 73 18 chr9 20563638 20563748 -121707696 + L2 LINE L2 3117 3232 -40 292 269 51 0 chr9 20564124 20564202 -121707242 - Tigger5 DNA MER2_type 0 2323 2242 * 313 304 0 0 chr9 20564192 20564271 -121707173 + Tigger5 DNA MER2_type 2242 2320 -3 * 450 185 0 25 chr9 20564271 20564351 -121707093 - Tigger5 DNA MER2_type -2245 78 1 1313 167 132 21 chr9 20566012 20566293 -121705151 - AluJo SINE Alu 0 312 1 688 144 0 0 chr9 20566523 20566627 -121704817 - AluSg/x SINE Alu -16 296 193 366 217 264 8 chr9 20567459 20567588 -121703856 + MIR SINE MIR 33 194 -68 268 340 0 38 chr9 20572447 20572553 -121698891 + MIR SINE MIR 45 146 -62 986 124 0 0 chr9 20574353 20574498 -121696946 - AluJb SINE Alu 0 312 168 2032 149 10 0 chr9 20574534 20574830 -121696614 - AluSx SINE Alu -13 299 1 1035 179 6 0 chr9 20574884 20575052 -121696392 + FAM SINE Alu 1 169 -6 1077 163 101 53 chr9 20575101 20575328 -121696116 - MER8 DNA MER2_type -1 238 1 756 168 16 0 chr9 20575366 20575491 -121695953 + MER45A DNA AcHobo 52 178 0 370 281 40 53 chr9 20575501 20575729 -121695715 - L1ME3A LINE L1 -114 6056 5832 1929 132 68 7 chr9 20575799 20576094 -121695350 - AluSq SINE Alu 0 313 1 2810 228 133 16 chr9 20576095 20577856 -121693588 - L1MEc LINE L1 -2808 3836 1845 827 180 132 6 chr9 20577870 20578037 -121693407 - MSTB LTR MaLR -54 372 185 9265 153 26 1 chr9 20578087 20580429 -121691015 - L1PA11 LINE L1 0 6876 4461 4106 225 55 51 chr9 20580429 20580818 -121690626 - L1PA11 LINE L1 -4593 2245 1859 2130 109 0 43 chr9 20580818 20581121 -121690323 - AluSg SINE Alu -20 290 1 4106 225 55 51 chr9 20581121 20582584 -121688860 - L1PA11 LINE L1 -4979 1859 2 2045 200 108 0 chr9 20582587 20583077 -121688367 - L1MEc LINE L1 -4788 1858 1316 594 233 264 24 chr9 20583080 20583410 -121688034 - L1MEc LINE L1 -5436 1210 802 299 350 45 16 chr9 20583549 20583795 -121687649 - L1MEc LINE L1 -6282 260 8 442 312 144 50 chr9 20583853 20584587 -121686857 + L2 LINE L2 1812 2614 -700 727 207 41 28 chr9 20584670 20584815 -121686629 - AluJb SINE Alu -31 281 135 184 326 102 27 chr9 20584829 20584976 -121686468 + L2 LINE L2 2709 2866 -448 299 320 204 0 chr9 20585390 20585537 -121685907 + MER5A DNA MER1_type 13 189 0 563 231 173 54 chr9 20586768 20587158 -121684286 + MLT1D LTR MaLR 3 438 -29 230 300 150 7 chr9 20589619 20589759 -121681685 + MIR SINE MIR 91 250 -12 1702 193 16 25 chr9 20592184 20592552 -121678892 + MLT1A1 LTR MaLR 1 365 0 525 152 20 20 chr9 20592606 20592705 -121678739 - AluJo/FRAM SINE Alu -5 307 209 288 250 0 0 chr9 20592705 20592757 -121678687 - AluSx SINE Alu -126 176 125 573 192 0 0 chr9 20592762 20592882 -121678562 + (TA)n Simple_repeat Simple_repeat 1 120 0 909 133 0 8 chr9 20592884 20593012 -121678432 - AluSx SINE Alu -186 127 1 259 241 115 23 chr9 20593067 20593154 -121678290 - MIR3 SINE MIR -33 175 81 225 317 70 21 chr9 20593391 20593533 -121677911 + MLT1H LTR MaLR 29 177 -372 283 183 98 0 chr9 20593533 20593615 -121677829 + L1MB3 LINE L1 4349 4438 -1708 603 172 131 16 chr9 20593616 20593738 -121677706 + MSTC LTR MaLR 1 136 -292 575 107 12 0 chr9 20593830 20593914 -121677530 + MSTC LTR MaLR 310 394 -2 4814 182 45 12 chr9 20593923 20595583 -121675861 + L1MB3 LINE L1 4446 6171 -12 492 262 28 108 chr9 20595583 20595894 -121675550 + MLT1H LTR MaLR 152 549 0 2073 137 13 7 chr9 20596006 20596305 -121675139 - AluJo SINE Alu -11 301 1 14862 125 45 7 chr9 20597239 20599547 -121671897 + Tigger1 DNA MER2_type 1 2395 -23 512 213 186 11 chr9 20599989 20600177 -121671267 + LTR50 LTR ERVL 258 478 -317 17176 150 70 4 chr9 20600195 20602682 -121668762 + L1PB1 LINE L1 1 2323 -4544 276 30 0 0 chr9 20602682 20602715 -121668729 + (CA)n Simple_repeat Simple_repeat 1 33 0 17176 150 70 4 chr9 20602715 20606678 -121664766 + L1PB1 LINE L1 2323 6866 -1 516 127 223 48 chr9 20606687 20606853 -121664591 + LTR50 LTR ERVL 556 750 -45 309 381 6 6 chr9 20607540 20607716 -121663728 - L2 LINE L2 -1153 2161 1986 1362 279 115 54 chr9 20608135 20609083 -121662361 + L1ME LINE L1 10 1015 -5055 467 265 145 51 chr9 20609086 20609459 -121661985 + L1ME LINE L1 1052 1459 -4621 830 319 57 53 chr9 20609464 20609674 -121661770 + L1MEc LINE L1 41 249 -6147 2775 140 35 28 chr9 20609674 20610138 -121661306 - MLT1C LTR MaLR 0 467 1 830 319 57 53 chr9 20610138 20610492 -121660952 + L1MEc LINE L1 249 607 -5789 1192 254 70 16 chr9 20610527 20611015 -121660429 + L1MEc LINE L1 683 1196 -5200 2228 90 3 3 chr9 20611091 20611380 -121660064 + AluSg SINE Alu 1 289 -21 858 285 116 32 chr9 20611850 20612316 -121659128 + MLT1J LTR MaLR 1 505 -6 4135 30 4 0 chr9 20613512 20613972 -121657472 + L1PA4 LINE L1 5691 6152 -3 1098 210 56 9 chr9 20618481 20618695 -121652749 - MER58A DNA MER1_type 0 224 1 675 78 0 48 chr9 20619076 20619179 -121652265 + L1PB3 LINE L1 6057 6154 0 552 341 88 6 chr9 20619213 20619473 -121651971 - L1ME LINE L1 -350 5771 5473 2359 185 88 4 chr9 20619473 20619937 -121651507 + MLT1D LTR MaLR 3 505 0 552 341 88 6 chr9 20619937 20620028 -121651416 - L1ME LINE L1 -648 5473 5391 1567 247 126 25 chr9 20620756 20621752 -121649692 + L1MC4 LINE L1 6459 7728 -314 275 248 41 0 chr9 20621801 20621888 -121649556 + L1MC4 LINE L1 7905 8041 0 2104 125 20 0 chr9 20622259 20622556 -121648888 + AluSx SINE Alu 1 303 -9 186 133 0 0 chr9 20624763 20624793 -121646651 + (TG)n Simple_repeat Simple_repeat 2 31 0 282 56 0 0 chr9 20625090 20625126 -121646318 + (CA)n Simple_repeat Simple_repeat 1 36 0 2561 149 259 14 chr9 20625213 20625797 -121645647 + LTR8A LTR ERV1 1 727 0 183 295 89 27 chr9 20626192 20626304 -121645140 - MIR SINE MIR -56 206 88 852 246 96 17 chr9 20626628 20626868 -121644576 - MIR SINE MIR 0 262 4 4256 163 20 3 chr9 20626923 20627622 -121643822 + MER50 LTR ERV1 1 711 -23 269 321 9 37 chr9 20628012 20628121 -121643323 - MIR SINE MIR 0 262 157 1053 189 35 0 chr9 20630126 20630327 -121641117 + MER58A DNA MER1_type 17 224 0 344 222 120 26 chr9 20630714 20630831 -121640613 - MER5B DNA MER1_type -30 148 21 1112 272 34 68 chr9 20631146 20631696 -121639748 + L2 LINE L2 2783 3313 0 537 347 120 22 chr9 20632173 20632913 -121638531 + L2 LINE L2 2480 3272 0 394 327 10 0 chr9 20632913 20633017 -121638427 + L2 LINE L2 3168 3272 0 45290 38 1 1 chr9 20633832 20639980 -121631464 + L1PA3 LINE L1 8 6152 -3 1260 153 8 168 chr9 20640120 20640472 -121630972 - AluJo SINE Alu -16 296 1 234 0 0 0 chr9 20640475 20640501 -121630943 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 384 22 0 0 chr9 20640611 20640656 -121630788 + (TG)n Simple_repeat Simple_repeat 2 46 0 2342 116 45 25 chr9 20640657 20641012 -121630432 + THE1B LTR MaLR 3 364 0 963 180 16 22 chr9 20641175 20641358 -121630086 - MER58A DNA MER1_type 0 224 43 591 263 124 11 chr9 20641359 20641545 -121629899 + L1ME1 LINE L1 386 592 -5804 1103 261 53 0 chr9 20641546 20641887 -121629557 + L1M4 LINE L1 4777 5135 -1011 * 3172 234 73 36 chr9 20641885 20642792 -121628652 + L1ME1 LINE L1 4194 5066 -1337 5200 121 8 0 chr9 20642792 20643507 -121627937 + L1PA16 LINE L1 5434 6157 -9 3172 234 73 36 chr9 20643507 20644546 -121626898 + L1ME1 LINE L1 5066 6377 -26 5264 138 33 1 chr9 20644605 20645792 -121625652 + L1P4 LINE L1 4429 5645 -518 358 311 50 0 chr9 20646306 20646425 -121625019 + MER117 DNA MER1_type 73 197 0 460 143 101 92 chr9 20648173 20648292 -121623152 - L1MC1 LINE L1 -13 6320 6201 195 315 72 27 chr9 20649514 20649625 -121621819 - MIR SINE MIR -18 244 129 237 275 9 37 chr9 20650262 20650371 -121621073 - L1MC4 LINE L1 -1329 6713 6608 370 297 180 2 chr9 20650383 20650554 -121620890 + MIR3 SINE MIR 5 205 -3 25 0 0 0 chr9 20651831 20651856 -121619588 + AT_rich Low_complexity Low_complexity 1 25 0 398 310 30 0 chr9 20652302 20652402 -121619042 - MIR SINE MIR -139 123 21 677 210 138 33 chr9 20653163 20653439 -121618005 + L1ME3A LINE L1 5860 6164 -6 2500 88 0 0 chr9 20654021 20654326 -121617118 + AluSg SINE Alu 1 305 -5 494 68 27 0 chr9 20654939 20655013 -121616431 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 2121 122 3 3 chr9 20655013 20655309 -121616135 - AluSx SINE Alu -16 296 1 249 292 14 0 chr9 20655423 20655495 -121615949 + GA-rich Low_complexity Low_complexity 4 76 0 425 271 132 7 chr9 20656228 20656372 -121615072 - MIR SINE MIR -17 245 84 1015 224 52 45 chr9 20657406 20657836 -121613608 + MLT1J1 LTR MaLR 1 395 -14 325 309 39 73 chr9 20657905 20658172 -121613272 + L2 LINE L2 2737 2996 -276 2235 121 0 0 chr9 20659545 20659843 -121611601 - AluSx SINE Alu -14 298 1 1918 148 10 3 chr9 20660216 20660507 -121610937 - AluJb SINE Alu -19 293 1 228 259 111 12 chr9 20661660 20661741 -121609703 + L2 LINE L2 3179 3267 -46 747 130 0 0 chr9 20662104 20662227 -121609217 + L1MA5A LINE L1 6165 6287 -10 28 0 0 0 chr9 20662227 20662255 -121609189 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr9 20662268 20662296 -121609148 + (A)n Simple_repeat Simple_repeat 1 28 0 359 125 0 14 chr9 20662408 20662480 -121608964 - L1MD2 LINE L1 0 6359 6289 1990 129 43 0 chr9 20662481 20662760 -121608684 + AluSx SINE Alu 2 292 -20 2317 127 41 8 chr9 20662761 20663155 -121608289 + L1MA6 LINE L1 5889 6295 -5 3585 109 5 38 chr9 20663187 20663275 -121608169 - L1MA6 LINE L1 -396 5904 5815 1710 159 0 80 chr9 20663275 20663614 -121607830 - AluJb SINE Alu 0 312 1 3585 109 5 38 chr9 20663614 20664137 -121607307 - L1MA6 LINE L1 -485 5815 5313 2141 93 31 0 chr9 20664143 20664464 -121606980 - L1PA13 LINE L1 -21 6142 5812 905 172 27 0 chr9 20664463 20664649 -121606795 - L1MA6 LINE L1 -813 5333 5143 * 6184 169 38 23 chr9 20664645 20665753 -121605691 + L1MB8 LINE L1 3665 4736 -1410 2276 101 7 0 chr9 20665753 20666049 -121605395 + AluSc SINE Alu 1 298 -11 6184 169 38 23 chr9 20666049 20666455 -121604989 + L1MB8 LINE L1 4736 5134 -1012 1821 228 51 31 chr9 20666457 20667307 -121604137 - L1M4 LINE L1 -1031 5115 4093 2232 222 95 54 chr9 20667327 20668247 -121603197 - L1MDa LINE L1 -5472 1068 18 695 278 105 49 chr9 20668970 20669202 -121602242 + L2 LINE L2 2538 2756 -557 2339 111 3 0 chr9 20669202 20669509 -121601935 - AluSq SINE Alu -5 308 1 695 278 105 49 chr9 20669509 20670023 -121601421 + L2 LINE L2 2756 3308 -5 342 327 46 26 chr9 20670070 20670223 -121601221 - MIR SINE MIR -84 178 23 186 339 0 0 chr9 20670235 20670297 -121601147 + MER5A DNA MER1_type 8 69 -120 393 210 22 101 chr9 20670709 20670847 -121600597 + MER5A DNA MER1_type 54 180 -9 2457 48 0 6 chr9 20671343 20671654 -121599790 - AluY SINE Alu -2 309 1 707 240 18 0 chr9 20672573 20672744 -121598700 + MLT1J1 LTR MaLR 3 176 -270 369 271 197 15 chr9 20673336 20673543 -121597901 + MIR SINE MIR 15 260 -2 214 279 58 12 chr9 20674891 20674977 -121596467 - MIR3 SINE MIR -7 201 112 861 186 144 168 chr9 20675457 20675963 -121595481 + MLT1E3 LTR MaLR 4 616 -8 2434 192 86 4 chr9 20676010 20676693 -121594751 + L1MB8 LINE L1 5352 6090 -88 276 154 195 0 chr9 20676693 20676816 -121594628 - FRAM SINE Alu -9 157 11 22 0 0 0 chr9 20678032 20678054 -121593390 + AT_rich Low_complexity Low_complexity 1 22 0 689 270 28 22 chr9 20679685 20679863 -121591581 + MIR3 SINE MIR 6 184 -24 2565 154 26 11 chr9 20681000 20681486 -121589958 + MER41B LTR ERV1 100 466 -12 24 0 0 0 chr9 20682067 20682091 -121589353 + AT_rich Low_complexity Low_complexity 1 24 0 891 203 62 75 chr9 20683071 20683298 -121588146 - MER58A DNA MER1_type 0 224 1 321 26 0 0 chr9 20683660 20683698 -121587746 + (TA)n Simple_repeat Simple_repeat 2 39 0 2118 97 24 0 chr9 20684340 20684629 -121586815 + AluSx SINE Alu 1 296 -16 2298 106 25 33 chr9 20685132 20685499 -121585945 + THE1B LTR MaLR 1 364 0 2323 111 0 10 chr9 20685879 20686186 -121585258 + AluSx SINE Alu 4 307 -5 1055 204 68 30 chr9 20686221 20686588 -121584856 + LTR37A LTR ERV1 46 426 0 1785 180 0 22 chr9 20687766 20688083 -121583361 + AluJo SINE Alu 1 310 -2 552 263 66 89 chr9 20688601 20688812 -121582632 + L2 LINE L2 1929 2130 -1184 2113 122 0 17 chr9 20688812 20689107 -121582337 + AluSx SINE Alu 3 292 -20 552 263 66 89 chr9 20689107 20689245 -121582199 + L2 LINE L2 2130 2270 -1044 528 242 50 25 chr9 20689280 20689441 -121582003 - MIR SINE MIR -10 252 88 764 275 37 60 chr9 20689476 20689774 -121581670 + L2 LINE L2 2294 2584 -730 515 181 7 49 chr9 20690143 20690213 -121581231 + LTR37A LTR ERV1 289 353 -73 2145 102 0 14 chr9 20690213 20690529 -121580915 + AluSc SINE Alu 1 312 0 515 181 7 49 chr9 20690529 20690601 -121580843 + LTR37A LTR ERV1 353 426 0 445 297 90 7 chr9 20690601 20690746 -121580698 - MIR SINE MIR -104 158 2 498 324 85 47 chr9 20690753 20691197 -121580247 + L2 LINE L2 2569 2994 -278 1999 135 143 8 chr9 20691197 20691574 -121579870 + MSTA LTR MaLR 1 428 0 7694 157 93 37 chr9 20691574 20693136 -121578308 + MSTA-int LTR MaLR 1 1649 -2 1940 161 135 5 chr9 20693138 20693517 -121577927 + MSTA LTR MaLR 1 428 0 498 324 85 47 chr9 20693517 20693544 -121577900 + L2 LINE L2 2994 3078 -194 508 249 234 19 chr9 20695502 20695711 -121575733 - MIR SINE MIR 0 262 9 186 133 0 0 chr9 20697844 20697874 -121573570 + (T)n Simple_repeat Simple_repeat 1 30 0 683 102 19 0 chr9 20698575 20698683 -121572761 + MER41B LTR ERV1 2 111 -524 180 0 0 0 chr9 20698685 20698705 -121572739 + (TA)n Simple_repeat Simple_repeat 2 21 0 1342 172 34 4 chr9 20698705 20698938 -121572506 - AluSg/x SINE Alu 0 312 73 2115 104 3 17 chr9 20698967 20699254 -121572190 + AluSq SINE Alu 1 283 -30 285 98 0 0 chr9 20699254 20699295 -121572149 + (TA)n Simple_repeat Simple_repeat 1 41 0 2065 108 20 7 chr9 20701143 20701448 -121569996 - AluSx SINE Alu -2 310 2 200 234 16 31 chr9 20701524 20701588 -121569856 - MIR SINE MIR -111 151 89 202 231 108 0 chr9 20701806 20701871 -121569573 - MIR3 SINE MIR -9 199 128 200 329 0 13 chr9 20702995 20703074 -121568370 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 21 0 0 0 chr9 20703103 20703124 -121568320 + AT_rich Low_complexity Low_complexity 1 21 0 180 191 43 43 chr9 20703957 20704004 -121567440 + MIR SINE MIR 183 229 -33 28 29 0 0 chr9 20704695 20704730 -121566714 + AT_rich Low_complexity Low_complexity 1 35 0 1958 158 0 0 chr9 20705752 20706055 -121565389 - AluJo SINE Alu -9 303 1 368 174 31 61 chr9 20706162 20706260 -121565184 - L1MC5 LINE L1 -36 7925 7831 2202 161 83 40 chr9 20706266 20706714 -121564730 + MLT1C LTR MaLR 1 467 0 1016 197 43 14 chr9 20708459 20708667 -121562777 - MER58A DNA MER1_type -6 218 5 2302 88 3 10 chr9 20710034 20710340 -121561104 + AluSp SINE Alu 1 304 -9 1739 201 0 0 chr9 20710707 20711005 -121560439 + AluJo SINE Alu 1 298 -14 1569 174 10 23 chr9 20711812 20712116 -121559328 - AluJb SINE Alu -8 304 5 23 0 0 0 chr9 20712605 20712628 -121558816 + AT_rich Low_complexity Low_complexity 1 23 0 2311 98 3 3 chr9 20713116 20713422 -121558022 - AluSp SINE Alu -7 306 1 1066 172 11 21 chr9 20714039 20714203 -121557241 - AluSg/x SINE Alu -14 298 135 1995 140 0 17 chr9 20714203 20714503 -121556941 - AluSq SINE Alu -18 295 1 1066 172 11 21 chr9 20714503 20714524 -121556920 - AluSg/x SINE Alu -177 135 115 2039 131 0 23 chr9 20714585 20714891 -121556553 - AluSx SINE Alu -13 299 1 365 145 0 0 chr9 20715041 20715103 -121556341 + MER41A LTR ERV1 130 191 -363 662 143 20 0 chr9 20715105 20715203 -121556241 + AluJ/FLAM SINE Alu 2 101 -211 206 0 69 0 chr9 20715203 20715232 -121556212 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1652 122 0 17 chr9 20715374 20715611 -121555833 - AluSx SINE Alu -79 233 1 615 142 150 0 chr9 20715612 20715739 -121555705 + L1MB4 LINE L1 6005 6150 -30 2239 118 7 0 chr9 20715753 20716059 -121555385 - AluSx SINE Alu -4 308 1 2042 113 35 0 chr9 20716345 20716629 -121554815 - AluSx SINE Alu -16 296 3 867 115 8 0 chr9 20717462 20717584 -121553860 + AluSq/x SINE Alu 1 123 -189 1711 182 3 0 chr9 20718148 20718439 -121553005 + AluJo SINE Alu 10 301 -11 2373 37 44 10 chr9 20718439 20718732 -121552712 + AluY SINE Alu 1 304 -7 2358 110 0 0 chr9 20718908 20719217 -121552227 + AluSq SINE Alu 3 311 -2 1915 127 25 0 chr9 20719436 20719711 -121551733 + AluSx SINE Alu 10 291 -21 1428 97 10 5 chr9 20719712 20719908 -121551536 + AluSp SINE Alu 29 225 -88 799 157 0 0 chr9 20720011 20720126 -121551318 - AluJb SINE Alu -195 117 3 2111 83 0 66 chr9 20720159 20720460 -121550984 - AluSx SINE Alu -11 301 21 794 206 187 0 chr9 20720460 20720674 -121550770 - MIR SINE MIR -6 256 3 237 300 118 9 chr9 20721469 20721579 -121549865 + MIR3 SINE MIR 13 134 -74 708 111 10 0 chr9 20721660 20721783 -121549661 + AluJb SINE Alu 213 336 0 2036 145 7 3 chr9 20721889 20722199 -121549245 + AluSq SINE Alu 1 311 -2 1221 129 0 0 chr9 20722199 20722377 -121549067 + AluSg/x SINE Alu 134 311 -1 1029 115 107 123 chr9 20722514 20722767 -121548677 + MER7A DNA MER2_type 2 248 -98 323 132 55 99 chr9 20722772 20722863 -121548581 + Tigger3(Golem) DNA MER2_type 2844 2930 -99 242 200 0 0 chr9 20722891 20722936 -121548508 + MER1B DNA MER1_type 6 50 -287 898 134 119 64 chr9 20722946 20723148 -121548296 + MER1B DNA MER1_type 127 339 0 445 216 11 0 chr9 20723148 20723212 -121548232 + Tigger3(Golem) DNA MER2_type 2916 2980 -49 2104 116 3 22 chr9 20724210 20724528 -121546916 - AluSx SINE Alu 0 312 1 243 0 0 0 chr9 20724561 20724588 -121546856 + (TA)n Simple_repeat Simple_repeat 2 28 0 2323 76 0 0 chr9 20724592 20724882 -121546562 - AluSx SINE Alu -18 294 5 2212 128 0 0 chr9 20725137 20725449 -121545995 + AluSx SINE Alu 1 312 0 217 114 0 68 chr9 20725526 20725570 -121545874 - MIR SINE MIR -101 161 121 21 0 0 0 chr9 20725610 20725631 -121545813 + AT_rich Low_complexity Low_complexity 1 21 0 270 195 363 0 chr9 20725952 20726065 -121545379 + MER5A DNA MER1_type 15 168 -21 715 202 48 0 chr9 20726172 20726296 -121545148 + FLAM_C SINE Alu 1 130 -3 316 83 50 17 chr9 20727119 20727208 -121544236 + Alu SINE Alu 238 328 0 308 202 67 42 chr9 20727230 20727349 -121544095 + L1MC4a LINE L1 6056 6177 -1631 2282 115 0 6 chr9 20727350 20727664 -121543780 + AluSx SINE Alu 1 312 0 1056 254 71 24 chr9 20728164 20728542 -121542902 + LTR16B LTR ERVL 1 396 -68 1042 126 0 7 chr9 20728771 20728914 -121542530 + AluSq/x SINE Alu 1 142 -170 2188 105 6 6 chr9 20729149 20729462 -121541982 - AluSq SINE Alu 0 313 1 2192 123 3 0 chr9 20729472 20729782 -121541662 - AluY SINE Alu 0 311 1 1261 123 0 0 chr9 20730143 20730314 -121541130 - AluSg/x SINE Alu -12 300 130 2077 122 23 0 chr9 20730327 20730630 -121540814 - AluSx SINE Alu -2 310 1 2091 122 27 0 chr9 20730632 20730927 -121540517 - AluSx SINE Alu -9 303 1 2103 121 3 10 chr9 20731281 20731587 -121539857 + AluSx SINE Alu 1 304 -8 297 0 0 0 chr9 20731587 20731620 -121539824 + (CA)n Simple_repeat Simple_repeat 2 34 0 923 127 0 15 chr9 20731937 20732071 -121539373 - FLAM_C SINE Alu -1 132 1 2403 75 3 3 chr9 20732684 20732978 -121538466 + AluSc SINE Alu 1 294 -15 2735 173 30 15 chr9 20733544 20734070 -121537374 + L1MB8 LINE L1 5509 6042 -136 763 133 21 14 chr9 20734083 20734216 -121537228 - L1MB4 LINE L1 0 6180 6044 1622 131 4 0 chr9 20734216 20734445 -121536999 + AluSx SINE Alu 1 230 -82 463 167 0 0 chr9 20734455 20734527 -121536917 - AluJ/FLAM SINE Alu -236 76 5 2184 112 20 0 chr9 20734594 20734898 -121536546 + AluSg SINE Alu 1 310 0 1870 116 4 0 chr9 20735198 20735456 -121535988 - AluSq SINE Alu -19 294 36 2362 96 3 0 chr9 20735610 20735911 -121535533 - AluSx SINE Alu -10 302 1 287 333 113 7 chr9 20735919 20736060 -121535384 - MIR SINE MIR -48 214 59 2043 149 0 0 chr9 20736060 20736362 -121535082 - AluJb SINE Alu -10 302 1 1933 130 3 20 chr9 20736506 20736671 -121534773 - AluSx SINE Alu -16 296 137 2359 103 0 3 chr9 20736671 20736982 -121534462 - AluSg SINE Alu 0 310 1 1933 130 3 20 chr9 20736982 20737116 -121534328 - AluSx SINE Alu -175 137 2 1593 182 0 4 chr9 20737185 20737449 -121533995 + AluJb SINE Alu 35 297 -15 1319 173 5 5 chr9 20737555 20737775 -121533669 - AluSx SINE Alu -92 220 1 931 196 20 67 chr9 20737778 20737954 -121533490 + L2 LINE L2 2418 2580 -734 2134 122 20 0 chr9 20737954 20738248 -121533196 - AluSx SINE Alu -12 300 1 931 196 20 67 chr9 20738248 20738326 -121533118 + L2 LINE L2 2580 2660 -654 2475 100 112 45 chr9 20738374 20738534 -121532910 + MSTA LTR MaLR 1 149 -279 2346 92 0 19 chr9 20738534 20738849 -121532595 - AluSg1 SINE Alu 0 309 1 2475 100 112 45 chr9 20738849 20739089 -121532355 + MSTA LTR MaLR 149 428 0 24 0 0 0 chr9 20739093 20739117 -121532327 + AT_rich Low_complexity Low_complexity 1 24 0 2538 108 45 66 chr9 20739117 20739483 -121531961 - L1PA16 LINE L1 -9 6157 5800 2374 92 3 3 chr9 20739483 20739786 -121531658 - AluSg SINE Alu -7 303 1 2538 108 45 66 chr9 20739786 20739843 -121531601 - L1PA16 LINE L1 -366 5800 5743 1328 203 28 2 chr9 20739843 20740124 -121531320 - L1P LINE L1 -1889 4257 3975 476 296 108 23 chr9 20740142 20740318 -121531126 + L2 LINE L2 2726 2916 -398 504 77 0 39 chr9 20740342 20740420 -121531024 - Alu SINE Alu -3 309 235 754 159 0 9 chr9 20740560 20740673 -121530771 + FLAM_C SINE Alu 11 122 -21 322 339 8 31 chr9 20740699 20740829 -121530615 + MER5A DNA MER1_type 63 189 0 2207 100 0 16 chr9 20740972 20741282 -121530162 + AluSc SINE Alu 1 305 -4 212 315 43 0 chr9 20741283 20741375 -121530069 - MIR SINE MIR -27 235 140 270 176 20 0 chr9 20741417 20741468 -121529976 + MER57A LTR ERV1 284 335 -68 360 188 0 62 chr9 20741662 20741742 -121529702 + AluJ/FRAM SINE Alu 228 302 0 2286 103 13 0 chr9 20742484 20742786 -121528658 + AluSx SINE Alu 1 306 -6 2178 129 0 0 chr9 20742786 20743095 -121528349 + AluSg SINE Alu 1 310 0 368 265 23 66 chr9 20743257 20743441 -121528003 - MIR3 SINE MIR -22 186 7 232 343 15 0 chr9 20743390 20743457 -121527987 + MIR SINE MIR 29 96 -166 * 252 0 0 0 chr9 20743966 20743994 -121527450 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 287 253 202 0 chr9 20744002 20744101 -121527343 - MIR SINE MIR 0 262 144 1831 97 4 0 chr9 20744126 20744373 -121527071 - AluSp SINE Alu 0 313 66 2272 104 0 0 chr9 20744674 20744972 -121526472 + AluSg SINE Alu 4 301 -9 2272 84 0 3 chr9 20744977 20745293 -121526151 + AluSg SINE Alu 1 315 0 2328 93 0 7 chr9 20745806 20746106 -121525338 + AluSg SINE Alu 1 298 -12 231 36 0 0 chr9 20746188 20746216 -121525228 + (TC)n Simple_repeat Simple_repeat 1 28 0 1565 159 45 28 chr9 20747021 20747310 -121524134 + AluJb SINE Alu 13 306 -6 1826 153 3 17 chr9 20747406 20747543 -121523901 + AluSx SINE Alu 1 138 -174 1966 124 38 0 chr9 20747543 20747833 -121523611 + AluSx SINE Alu 1 301 -11 1826 153 3 17 chr9 20747833 20747983 -121523461 + AluSx SINE Alu 138 284 -28 615 174 0 0 chr9 20747988 20748080 -121523364 + AluJo SINE Alu 127 218 -94 489 231 52 23 chr9 20748217 20748375 -121523069 + L1MC/D LINE L1 5392 5553 -568 882 216 6 28 chr9 20748377 20748558 -121522886 + AluJb SINE Alu 2 178 -134 2227 80 3 3 chr9 20748558 20748844 -121522600 + AluSp SINE Alu 24 309 -4 2025 132 30 3 chr9 20748844 20749139 -121522305 + AluSq SINE Alu 1 304 -9 2151 148 0 0 chr9 20749788 20750099 -121521345 + AluSx SINE Alu 1 311 -1 1790 161 39 0 chr9 20750711 20750996 -121520448 + AluSx SINE Alu 1 296 -16 24 0 0 0 chr9 20751063 20751087 -121520357 + AT_rich Low_complexity Low_complexity 1 24 0 250 292 192 0 chr9 20751583 20751713 -121519731 + L1ME4a LINE L1 5967 6121 0 2220 118 0 0 chr9 20752485 20752791 -121518653 + AluSx SINE Alu 2 307 -5 3197 24 1 0 chr9 20753319 20753828 -121517616 + L1P2 LINE L1 5009 5518 -637 1800 156 3 42 chr9 20754155 20754462 -121516982 + AluJo SINE Alu 1 295 -17 2195 115 0 16 chr9 20755133 20755437 -121516007 - AluSp SINE Alu -14 299 1 2038 127 0 33 chr9 20756850 20757157 -121514287 + AluSq SINE Alu 1 297 -16 29 28 0 0 chr9 20757213 20757249 -121514195 + AT_rich Low_complexity Low_complexity 1 36 0 481 227 0 0 chr9 20757258 20757355 -121514089 + AluJ/FLAM SINE Alu 2 98 -214 779 153 23 23 chr9 20757371 20757502 -121513942 - FLAM_C SINE Alu 0 133 3 555 100 11 22 chr9 20757502 20757592 -121513852 - LTR12 LTR ERV1 -625 89 1 709 229 71 92 chr9 20758615 20759011 -121512433 + L1MEd LINE L1 918 1321 -4808 1928 140 27 7 chr9 20759011 20759311 -121512133 - AluJb SINE Alu -6 306 1 709 229 71 92 chr9 20759311 20759363 -121512081 + L1MEd LINE L1 1321 1373 -4756 2000 134 48 0 chr9 20759363 20759655 -121511789 + AluSq SINE Alu 1 306 -7 709 229 71 92 chr9 20759655 20759672 -121511772 + L1MEd LINE L1 1373 1389 -4740 2077 137 14 0 chr9 20759672 20759965 -121511479 + AluSx SINE Alu 1 297 -15 709 229 71 92 chr9 20759965 20760149 -121511295 + L1MEd LINE L1 1389 1553 -4576 21 57 0 0 chr9 20760422 20760457 -121510987 + AT_rich Low_complexity Low_complexity 1 35 0 430 219 0 0 chr9 20761221 20761294 -121510150 - AluJ/FLAM SINE Alu -229 73 1 2423 156 36 24 chr9 20761640 20762140 -121509304 + L1MB8 LINE L1 5672 6177 -1 410 192 41 0 chr9 20762192 20762265 -121509179 + AluJ/FLAM SINE Alu 9 84 -228 1335 149 32 108 chr9 20762280 20762394 -121509050 + L1MB5 LINE L1 5858 5979 -195 2215 107 7 23 chr9 20762394 20762702 -121508742 + AluSx SINE Alu 1 303 -9 1335 149 32 108 chr9 20762702 20762800 -121508644 + L1MB5 LINE L1 5979 6037 -137 1804 142 47 27 chr9 20762800 20763096 -121508348 + AluJb SINE Alu 1 302 -10 1335 149 32 108 chr9 20763096 20763225 -121508219 + L1MB5 LINE L1 6037 6174 0 888 114 8 0 chr9 20763707 20763839 -121507605 + AluJb SINE Alu 178 310 -2 354 200 105 19 chr9 20763918 20764023 -121507421 + L1MC4a LINE L1 5722 5835 -1973 2310 100 0 10 chr9 20764087 20764398 -121507046 + AluSx SINE Alu 1 308 -4 1994 113 41 17 chr9 20764403 20764694 -121506750 + AluSx SINE Alu 1 298 -14 2247 112 10 0 chr9 20764788 20765084 -121506360 + AluSq SINE Alu 1 299 -14 1856 145 9 35 chr9 20765187 20765504 -121505940 - AluJb SINE Alu -3 309 1 707 240 6 0 chr9 20765507 20765686 -121505758 + L2 LINE L2 2418 2597 -717 2403 107 0 0 chr9 20765686 20765994 -121505450 - AluSx SINE Alu -4 308 1 243 274 216 0 chr9 20766040 20766142 -121505302 + L2 LINE L2 3190 3313 0 431 239 115 0 chr9 20766752 20766865 -121504579 + MIR3 SINE MIR 78 203 -5 2317 97 0 28 chr9 20766891 20767210 -121504234 + AluSg SINE Alu 1 310 0 2171 99 10 3 chr9 20767249 20767542 -121503902 + AluSq SINE Alu 1 295 -18 1145 168 106 0 chr9 20767684 20767892 -121503552 + AluJb SINE Alu 83 312 0 702 168 9 26 chr9 20767892 20768123 -121503321 + GA-rich Low_complexity Low_complexity 1 227 0 194 88 0 29 chr9 20768127 20768161 -121503283 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 192 97 0 0 chr9 20768400 20768431 -121503013 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 693 175 0 0 chr9 20768433 20768536 -121502908 - FRAM SINE Alu -30 146 44 1583 179 13 23 chr9 20768557 20768858 -121502586 - AluJo SINE Alu -14 298 1 267 254 0 14 chr9 20768937 20769008 -121502436 + L2 LINE L2 2992 3061 -211 258 214 71 10 chr9 20769071 20769169 -121502275 + L1MC/D LINE L1 5382 5485 -2323 818 137 0 15 chr9 20769258 20769389 -121502055 - AluJb SINE Alu -9 303 175 2198 109 10 0 chr9 20769757 20770050 -121501394 - AluY SINE Alu -15 296 1 856 124 0 29 chr9 20770170 20770307 -121501137 - FLAM_C SINE Alu 0 133 1 504 222 0 0 chr9 20770541 20770631 -121500813 - FRAM/FAM SINE Alu -87 89 1 1843 157 13 3 chr9 20771158 20771458 -121499986 + AluJb SINE Alu 1 303 -9 2102 109 35 3 chr9 20771792 20772077 -121499367 + AluSx SINE Alu 1 294 -18 1676 132 21 98 chr9 20772311 20772499 -121498945 - AluSx SINE Alu -12 300 146 2114 97 3 32 chr9 20772499 20772810 -121498634 - AluSg SINE Alu -8 302 1 1676 132 21 98 chr9 20772810 20772946 -121498498 - AluSx SINE Alu -166 146 1 2002 139 3 0 chr9 20773141 20773435 -121498009 - AluSx SINE Alu -17 295 1 2531 69 0 0 chr9 20774032 20774338 -121497106 - AluY SINE Alu -5 306 1 243 289 103 26 chr9 20775495 20775651 -121495793 - MIR SINE MIR -77 185 18 231 178 44 0 chr9 20775834 20775879 -121495565 + CT-rich Low_complexity Low_complexity 2 48 0 2043 158 7 0 chr9 20775880 20776190 -121495254 - AluJb SINE Alu 0 312 1 2341 90 0 7 chr9 20776348 20776648 -121494796 - AluSc SINE Alu -11 298 1 344 163 0 0 chr9 20776690 20776739 -121494705 + MER66B LTR ERV1 295 343 -143 1827 110 98 0 chr9 20777460 20777724 -121493720 - AluSx SINE Alu -22 290 1 2344 65 7 0 chr9 20778562 20778852 -121492592 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr9 20779297 20779318 -121492126 + GC_rich Low_complexity Low_complexity 1 21 0 1205 166 61 9 chr9 20779770 20779999 -121491445 + AluJb SINE Alu 9 249 -63 1459 106 79 131 chr9 20780055 20780384 -121491060 + AluJb SINE Alu 1 312 0 2514 53 0 7 chr9 20780906 20781229 -121490215 - AluSc SINE Alu 0 309 1 1790 139 17 14 chr9 20781907 20782013 -121489431 + LTR49 LTR ERV1 1 105 -490 459 0 0 0 chr9 20782013 20782064 -121489380 + (TG)n Simple_repeat Simple_repeat 1 51 0 1790 139 17 14 chr9 20782064 20782243 -121489201 + LTR49 LTR ERV1 105 287 -308 2039 152 12 12 chr9 20782243 20782579 -121488865 - MER1B DNA MER1_type -1 338 3 1077 176 126 76 chr9 20782580 20782882 -121488562 + LTR49 LTR ERV1 279 595 0 2106 136 148 84 chr9 20783077 20783183 -121488261 + MER4A LTR ERV1 1 99 -565 1903 141 16 20 chr9 20783183 20783487 -121487957 + AluJb SINE Alu 1 303 -9 2106 136 148 84 chr9 20783487 20784000 -121487444 + MER4A LTR ERV1 99 660 -4 2376 57 37 7 chr9 20784254 20784553 -121486891 - AluY SINE Alu -3 308 1 22 0 0 0 chr9 20784730 20784752 -121486692 + AT_rich Low_complexity Low_complexity 1 22 0 901 130 22 0 chr9 20784783 20784921 -121486523 - FLAM_C SINE Alu -2 141 1 1020 195 22 0 chr9 20785017 20785202 -121486242 + MER5A DNA MER1_type 1 189 0 260 196 113 62 chr9 20785239 20785336 -121486108 - MER5A DNA MER1_type -25 164 63 252 208 69 14 chr9 20785277 20785349 -121486095 + MER5A DNA MER1_type 81 156 -33 * 240 244 83 95 chr9 20785369 20785537 -121485907 - MIR SINE MIR -50 212 47 379 181 14 0 chr9 20785538 20785610 -121485834 + MIR SINE MIR 83 155 -107 1704 175 10 7 chr9 20785640 20785943 -121485501 + AluJo SINE Alu 1 304 -8 262 232 0 29 chr9 20785947 20786016 -121485428 + L1MC4 LINE L1 7976 8042 0 248 291 67 30 chr9 20786127 20786261 -121485183 + L1ME3A LINE L1 5933 6071 -99 2032 114 44 0 chr9 20786845 20787143 -121484301 + AluY SINE Alu 1 311 0 2267 85 39 19 chr9 20787258 20787565 -121483879 + AluSq SINE Alu 1 313 0 889 147 0 0 chr9 20788061 20788190 -121483254 - FLAM_A SINE Alu -4 129 1 21 0 0 0 chr9 20788277 20788298 -121483146 + AT_rich Low_complexity Low_complexity 1 21 0 2439 74 0 0 chr9 20788305 20788602 -121482842 + AluY SINE Alu 1 297 -14 465 200 0 33 chr9 20788739 20788829 -121482615 + AluJo SINE Alu 125 211 -101 1798 246 33 7 chr9 20788851 20789310 -121482134 + L1ME3A LINE L1 5691 6161 -9 2035 146 20 0 chr9 20789405 20789707 -121481737 - AluSx SINE Alu 0 312 5 983 157 7 0 chr9 20789714 20789867 -121481577 - FRAM SINE Alu -13 163 10 23 0 0 0 chr9 20790115 20790138 -121481306 + AT_rich Low_complexity Low_complexity 1 23 0 330 298 24 40 chr9 20790149 20790273 -121481171 + L2 LINE L2 3187 3308 -5 2108 110 18 0 chr9 20790814 20791095 -121480349 + AluSx SINE Alu 1 286 -26 2171 122 3 0 chr9 20791127 20791421 -121480023 + AluSx SINE Alu 6 300 -12 236 288 55 0 chr9 20791790 20791863 -121479581 + MIR3 SINE MIR 111 187 -21 1659 171 43 17 chr9 20792356 20792655 -121478789 + AluJo SINE Alu 1 307 -5 281 303 9 46 chr9 20792690 20792799 -121478645 + L2 LINE L2 3208 3312 -1 2342 95 0 3 chr9 20792920 20793214 -121478230 + AluSx SINE Alu 5 297 -15 1998 116 0 34 chr9 20793369 20793685 -121477759 + AluSx SINE Alu 1 306 0 1804 176 0 25 chr9 20793744 20794062 -121477382 + AluJb SINE Alu 1 310 -2 527 124 34 34 chr9 20794376 20794465 -121476979 + HY4 scRNA scRNA 1 89 -4 1109 148 0 0 chr9 20794627 20794782 -121476662 - AluJb SINE Alu -23 289 135 396 278 62 21 chr9 20795017 20795161 -121476283 + MER5A DNA MER1_type 22 171 -18 2231 89 13 16 chr9 20795447 20795750 -121475694 + AluSg SINE Alu 1 302 -8 2246 99 0 3 chr9 20795788 20796080 -121475364 + AluSg1 SINE Alu 1 291 -18 1999 118 14 0 chr9 20796252 20796531 -121474913 + AluSx SINE Alu 9 291 -21 1885 114 48 31 chr9 20797377 20797666 -121473778 - AluSx SINE Alu -18 294 1 260 336 23 15 chr9 20797918 20798049 -121473395 + MIR SINE MIR 72 203 -59 2139 105 0 7 chr9 20798060 20798346 -121473098 - AluSq SINE Alu -6 307 24 2223 121 3 0 chr9 20798374 20798679 -121472765 - AluSx SINE Alu -6 306 1 1049 165 0 75 chr9 20799240 20799428 -121472016 + AluSx SINE Alu 1 174 -138 1797 17 51 76 chr9 20799534 20799771 -121471673 - AluY SINE Alu -80 231 1 192 254 0 70 chr9 20799919 20799990 -121471454 - MIR3 SINE MIR -51 157 92 1798 153 17 3 chr9 20800096 20800383 -121471061 - AluJb SINE Alu -12 300 10 355 150 17 0 chr9 20800391 20800451 -121470993 - Alu SINE Alu -1 301 241 2173 128 0 3 chr9 20800477 20800773 -121470671 - AluSx SINE Alu -17 295 1 2211 197 68 73 chr9 20800786 20801386 -121470058 + LTR9 LTR ERV1 1 597 -15 1227 186 18 22 chr9 20801401 20801627 -121469817 - AluJo SINE Alu -87 225 1 232 253 55 77 chr9 20801743 20801834 -121469610 + MIR3 SINE MIR 119 207 -1 1188 181 61 146 chr9 20802106 20802213 -121469231 + MER34B LTR ERV1 1 115 -450 2033 128 0 10 chr9 20802213 20802502 -121468942 + AluJb SINE Alu 14 299 -13 1188 181 61 146 chr9 20802502 20802688 -121468756 + MER34B LTR ERV1 115 315 -250 1841 132 0 75 chr9 20802688 20802806 -121468638 + AluSx SINE Alu 1 126 -186 1989 152 0 10 chr9 20802806 20803108 -121468336 - AluJb SINE Alu -13 299 1 1841 132 0 75 chr9 20803108 20803308 -121468136 + AluSx SINE Alu 126 295 -17 1188 181 61 146 chr9 20803308 20803650 -121467794 + MER34B LTR ERV1 315 565 0 2321 86 7 0 chr9 20803954 20804246 -121467198 + AluSx SINE Alu 3 296 -16 330 289 46 58 chr9 20804668 20804841 -121466603 + L2 LINE L2 2866 3036 -236 272 243 56 75 chr9 20804848 20804955 -121466489 - L1ME LINE L1 -393 5728 5624 653 101 11 0 chr9 20805292 20805404 -121466040 + AluSg/x SINE Alu 193 305 0 493 155 0 0 chr9 20805641 20805725 -121465719 + AluSg/x SINE Alu 219 302 -7 3066 106 2 2 chr9 20805761 20806184 -121465260 - THE1C-int LTR MaLR -1154 426 4 1975 135 61 25 chr9 20806187 20806549 -121464895 - THE1C LTR MaLR 0 375 1 239 316 73 15 chr9 20806582 20806718 -121464726 + L2 LINE L2 2176 2319 -995 1035 230 4 13 chr9 20806741 20806971 -121464473 + L1MB7 LINE L1 4013 4240 -1906 934 91 0 0 chr9 20806972 20807093 -121464351 + AluSg/x SINE Alu 172 292 -18 1203 145 29 154 chr9 20807150 20807322 -121464122 + AluJo SINE Alu 2 111 -191 2269 104 3 0 chr9 20807322 20807619 -121463825 + AluSx SINE Alu 1 298 -14 1203 145 29 154 chr9 20807619 20807790 -121463654 + AluJo SINE Alu 111 302 0 2246 118 0 3 chr9 20807802 20808108 -121463336 + AluSx SINE Alu 8 312 0 1339 213 13 3 chr9 20808108 20808408 -121463036 + L1MB7 LINE L1 4420 4722 -1424 982 180 0 0 chr9 20808417 20808578 -121462866 - AluJo/FRAM SINE Alu -15 297 137 1793 163 3 49 chr9 20808578 20808757 -121462687 - AluJo SINE Alu -2 310 124 216 0 0 0 chr9 20808757 20808781 -121462663 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2004 124 7 0 chr9 20808785 20809059 -121462385 - AluSq SINE Alu -37 276 1 1793 163 3 49 chr9 20809059 20809199 -121462245 - AluJo SINE Alu -191 121 1 529 161 95 44 chr9 20809213 20809350 -121462094 + LTR23 LTR ERV1 1 144 -293 1400 203 37 14 chr9 20809352 20809648 -121461796 + AluJb SINE Alu 1 303 -9 808 174 8 0 chr9 20809650 20809782 -121461662 + FLAM_C SINE Alu 1 133 -10 1012 137 9 71 chr9 20809798 20809911 -121461533 + LTR23 LTR ERV1 197 293 -144 2486 70 0 3 chr9 20809911 20810212 -121461232 + AluY SINE Alu 1 300 -11 1012 137 9 71 chr9 20810212 20810309 -121461135 + LTR23 LTR ERV1 293 394 -43 447 151 11 43 chr9 20810309 20810402 -121461042 + L1MB7 LINE L1 4902 4991 -1155 1446 193 68 4 chr9 20810404 20810669 -121460775 + AluJo SINE Alu 1 282 -30 934 184 5 63 chr9 20810689 20810896 -121460548 + AluJo SINE Alu 107 301 -11 609 237 0 0 chr9 20810896 20811048 -121460396 + L1MB7 LINE L1 4990 5141 -1005 818 166 0 0 chr9 20811048 20811193 -121460251 - LTR54 LTR ERV1 0 510 366 1437 135 26 22 chr9 20811237 20811466 -121459978 - LTR54 LTR ERV1 -280 230 1 561 179 9 0 chr9 20811467 20811579 -121459865 + L1MB7 LINE L1 5139 5251 -895 2691 178 26 12 chr9 20811608 20811792 -121459652 + L1MB7 LINE L1 5500 5680 -494 2098 132 0 0 chr9 20811792 20812080 -121459364 - AluSx SINE Alu -24 288 1 2691 178 26 12 chr9 20812080 20812402 -121459042 + L1MB7 LINE L1 5680 6013 -161 222 118 0 0 chr9 20812406 20812440 -121459004 + (T)n Simple_repeat Simple_repeat 1 34 0 1897 112 90 0 chr9 20813178 20813446 -121457998 - AluSc SINE Alu -17 292 1 703 183 26 0 chr9 20813447 20813600 -121457844 + L1MB7 LINE L1 6025 6181 -3 1480 150 25 83 chr9 20814770 20814921 -121456523 + AluJb SINE Alu 1 126 -186 2292 91 0 10 chr9 20814921 20815228 -121456216 + AluSq SINE Alu 1 304 -9 1480 150 25 83 chr9 20815228 20815390 -121456054 + AluJb SINE Alu 126 296 -16 195 162 0 0 chr9 20815396 20815433 -121456011 + (TG)n Simple_repeat Simple_repeat 2 38 0 271 269 0 0 chr9 20815593 20815660 -121455784 + MER5A DNA MER1_type 9 75 -114 2183 115 0 10 chr9 20815660 20815956 -121455488 + AluSx SINE Alu 1 293 -19 2392 88 7 0 chr9 20815958 20816290 -121455154 + AluY SINE Alu 1 334 0 1435 177 39 14 chr9 20816489 20816528 -121454916 - AluJb SINE Alu -22 290 253 197 0 71 0 chr9 20816528 20816556 -121454888 + (CAGTG)n Simple_repeat Simple_repeat 1 30 0 1435 177 39 14 chr9 20816556 20816799 -121454645 - AluJb SINE Alu -59 253 1 33 25 0 0 chr9 20816800 20816840 -121454604 + AT_rich Low_complexity Low_complexity 1 40 0 833 99 0 99 chr9 20816840 20816981 -121454463 - AluJb SINE Alu -185 127 1 1828 180 3 0 chr9 20816987 20817292 -121454152 - AluSx SINE Alu -6 306 1 252 0 0 0 chr9 20817311 20817339 -121454105 + (A)n Simple_repeat Simple_repeat 1 28 0 1455 174 13 68 chr9 20817342 20817433 -121454011 + AluJo SINE Alu 3 97 -215 2323 84 3 17 chr9 20817433 20817757 -121453687 + AluSc SINE Alu 1 320 0 1455 174 13 68 chr9 20817757 20817975 -121453469 + AluJo SINE Alu 97 296 -16 406 254 76 34 chr9 20818010 20818128 -121453316 + L2 LINE L2 3145 3267 -5 33 0 0 0 chr9 20818395 20818428 -121453016 + AT_rich Low_complexity Low_complexity 1 33 0 2454 71 0 0 chr9 20818428 20818722 -121452722 - AluY SINE Alu -17 294 1 1365 124 5 55 chr9 20818728 20818946 -121452498 - AluSg/x SINE Alu -17 295 89 722 197 0 8 chr9 20818960 20819087 -121452357 - FLAM_C SINE Alu -7 126 1 937 186 6 6 chr9 20819174 20819341 -121452103 - FRAM SINE Alu -18 158 1 714 172 78 0 chr9 20819726 20819854 -121451590 - FLAM_C SINE Alu -4 139 2 300 266 65 8 chr9 20819875 20819999 -121451445 - L1ME4a LINE L1 0 6121 5991 432 0 0 0 chr9 20820002 20820050 -121451394 + (CA)n Simple_repeat Simple_repeat 2 49 0 2339 99 3 0 chr9 20820297 20820601 -121450843 + AluSq SINE Alu 5 309 -4 2212 97 0 0 chr9 20821753 20822031 -121449413 - AluY SINE Alu -29 282 5 249 274 0 0 chr9 20822642 20822726 -121448718 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 1656 179 0 15 chr9 20822740 20823008 -121448436 - AluJb SINE Alu -48 264 1 441 205 8 90 chr9 20823013 20823135 -121448309 - MER101 LTR ERV1 -250 224 113 1542 167 26 23 chr9 20823135 20823281 -121448163 - AluJb SINE Alu -47 265 115 2368 70 0 7 chr9 20823281 20823592 -121447852 + AluSq SINE Alu 1 309 0 1542 167 26 23 chr9 20823592 20823708 -121447736 - AluJb SINE Alu -197 115 1 25 65 0 0 chr9 20823714 20823760 -121447684 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 20823832 20823853 -121447591 + AT_rich Low_complexity Low_complexity 1 21 0 499 163 0 0 chr9 20823874 20823954 -121447490 - AluS SINE Alu -233 80 1 710 141 13 74 chr9 20824216 20824267 -121447177 + LTR23 LTR ERV1 255 308 -129 2477 70 0 3 chr9 20824267 20824567 -121446877 + AluY SINE Alu 1 299 -12 710 141 13 74 chr9 20824567 20824664 -121446780 + LTR23 LTR ERV1 308 394 -43 447 151 11 43 chr9 20824664 20824757 -121446687 + L1MB7 LINE L1 4902 4991 -1155 1477 191 69 0 chr9 20824759 20825021 -121446423 + AluJo SINE Alu 1 280 -32 959 174 5 63 chr9 20825043 20825250 -121446194 + AluJo SINE Alu 107 301 -11 609 237 0 0 chr9 20825250 20825402 -121446042 + L1MB7 LINE L1 4990 5141 -1005 818 166 0 0 chr9 20825402 20825547 -121445897 - LTR54 LTR ERV1 0 510 366 1437 135 26 22 chr9 20825591 20825820 -121445624 - LTR54 LTR ERV1 -280 230 1 561 179 9 0 chr9 20825821 20825933 -121445511 + L1MB7 LINE L1 5139 5251 -895 2691 178 26 12 chr9 20825962 20826146 -121445298 + L1MB7 LINE L1 5500 5680 -494 2098 132 0 0 chr9 20826146 20826434 -121445010 - AluSx SINE Alu -24 288 1 2691 178 26 12 chr9 20826434 20826756 -121444688 + L1MB7 LINE L1 5680 6013 -161 222 118 0 0 chr9 20826760 20826794 -121444650 + (T)n Simple_repeat Simple_repeat 1 34 0 1897 112 90 0 chr9 20827532 20827800 -121443644 - AluSc SINE Alu -17 292 1 703 183 26 0 chr9 20827801 20827954 -121443490 + L1MB7 LINE L1 6025 6181 -3 1480 150 25 83 chr9 20829124 20829275 -121442169 + AluJb SINE Alu 1 126 -186 2292 91 0 10 chr9 20829275 20829582 -121441862 + AluSq SINE Alu 1 304 -9 1480 150 25 83 chr9 20829582 20829744 -121441700 + AluJb SINE Alu 126 296 -16 195 162 0 0 chr9 20829750 20829787 -121441657 + (TG)n Simple_repeat Simple_repeat 2 38 0 271 269 0 0 chr9 20829947 20830014 -121441430 + MER5A DNA MER1_type 9 75 -114 2199 112 0 10 chr9 20830014 20830310 -121441134 + AluSx SINE Alu 1 293 -19 2711 45 0 0 chr9 20830312 20830621 -121440823 + AluY SINE Alu 1 309 -2 216 266 117 55 chr9 20830621 20830638 -121440806 - L2 LINE L2 -2909 405 390 2483 62 3 10 chr9 20830638 20830947 -121440497 + AluSq SINE Alu 1 307 -6 216 266 117 55 chr9 20830947 20831057 -121440387 - L2 LINE L2 -2923 391 270 195 219 0 0 chr9 20831889 20831930 -121439514 - MIR SINE MIR -5 257 217 31 0 0 0 chr9 20832197 20832228 -121439216 + AT_rich Low_complexity Low_complexity 1 31 0 2275 90 0 0 chr9 20832397 20832687 -121438757 - AluSc SINE Alu -19 290 1 679 161 0 46 chr9 20832691 20832821 -121438623 - FLAM_C SINE Alu -7 136 13 1522 132 113 8 chr9 20832824 20833089 -121438355 - AluJo SINE Alu -19 293 1 4685 123 18 20 chr9 20833091 20833878 -121437566 - L1MA4 LINE L1 -7 6293 5509 1849 106 31 100 chr9 20834957 20835278 -121436166 - AluSx SINE Alu -13 299 1 2197 109 0 7 chr9 20835623 20835925 -121435519 - AluY SINE Alu -11 300 1 1574 161 26 48 chr9 20835926 20836237 -121435207 - AluJb SINE Alu -8 304 1 2202 108 6 13 chr9 20836346 20836660 -121434784 - AluSq SINE Alu -1 312 1 2287 76 42 0 chr9 20837005 20837293 -121434151 - AluY SINE Alu -11 300 1 207 200 0 0 chr9 20837368 20837413 -121434031 + T-rich Low_complexity Low_complexity 1 45 0 2373 68 10 3 chr9 20838422 20838714 -121432730 - AluSq SINE Alu -19 294 1 2130 114 3 25 chr9 20838735 20839051 -121432393 - AluSc SINE Alu 0 309 1 419 157 108 10 chr9 20839051 20839153 -121432291 - L1M4 LINE L1 -1904 4242 4131 389 170 113 14 chr9 20839155 20839295 -121432149 - Charlie5 DNA MER1_type -28 2584 2431 660 245 19 58 chr9 20839295 20839467 -121431977 - MLT1C LTR MaLR 0 467 303 2398 100 3 0 chr9 20839467 20839777 -121431667 - AluSp SINE Alu -2 311 1 660 245 19 58 chr9 20839777 20839812 -121431632 - MLT1C LTR MaLR -164 303 268 1678 168 7 7 chr9 20839964 20840249 -121431195 + AluSx SINE Alu 19 303 -9 1812 180 47 7 chr9 20840320 20840748 -121430696 - L1M4 LINE L1 -1603 4543 4099 765 201 26 27 chr9 20840755 20840956 -121430488 + L1MB3 LINE L1 5671 5860 -323 11080 177 25 46 chr9 20840956 20841989 -121429455 + L1M1 LINE L1 1400 2453 -5112 2281 101 13 0 chr9 20841989 20842296 -121429148 + AluSq SINE Alu 1 311 -2 11080 177 25 46 chr9 20842296 20843050 -121428394 + L1M1 LINE L1 2453 3221 -4344 1704 177 7 7 chr9 20843050 20843344 -121428100 + AluJb SINE Alu 3 296 -16 11080 177 25 46 chr9 20843344 20843609 -121427835 + L1M1 LINE L1 3221 3490 -4075 1672 207 0 7 chr9 20843609 20843909 -121427535 + AluJo SINE Alu 1 298 -14 11080 177 25 46 chr9 20843909 20844511 -121426933 + L1M1 LINE L1 3490 4242 -3323 3551 59 0 0 chr9 20844509 20844951 -121426493 - L1PA5 LINE L1 -1044 5102 4661 * 7446 45 0 6 chr9 20844951 20846020 -121425424 + L1PA5 LINE L1 5116 6154 0 3449 174 43 32 chr9 20846020 20846131 -121425313 + L1M1 LINE L1 4238 4346 -3219 1654 197 3 7 chr9 20846131 20846430 -121425014 + AluJb SINE Alu 1 298 -14 3449 174 43 32 chr9 20846430 20846841 -121424603 + L1M1 LINE L1 4346 4775 -2790 2196 116 0 23 chr9 20846841 20847142 -121424302 + AluSx SINE Alu 1 294 -18 3449 174 43 32 chr9 20847142 20847428 -121424016 + L1M1 LINE L1 4775 5056 -2509 600 196 27 0 chr9 20847531 20847643 -121423801 + AluJo SINE Alu 23 137 -175 2103 150 0 6 chr9 20847655 20847969 -121423475 + AluSx SINE Alu 1 312 0 455 176 35 0 chr9 20848011 20848096 -121423348 + FLAM_A SINE Alu 25 112 -30 25 0 0 0 chr9 20848096 20848121 -121423323 + AT_rich Low_complexity Low_complexity 1 25 0 1808 161 16 10 chr9 20848121 20848425 -121423019 + AluJb SINE Alu 2 307 -5 2521 112 53 21 chr9 20848430 20849011 -121422433 + Tigger3(Golem) DNA MER2_type 2369 3028 -1 1853 152 3 7 chr9 20849633 20849923 -121421521 + AluJb SINE Alu 1 289 -23 40 21 0 0 chr9 20849929 20849976 -121421468 + AT_rich Low_complexity Low_complexity 1 47 0 2180 78 25 0 chr9 20850229 20850511 -121420933 + AluSg SINE Alu 1 289 -21 303 141 0 0 chr9 20850514 20850578 -121420866 + (CAGG)n Simple_repeat Simple_repeat 2 65 0 944 124 212 87 chr9 20850822 20850976 -121420468 - AluJo SINE Alu -16 296 163 2184 118 3 7 chr9 20850976 20851281 -121420163 - AluSq SINE Alu -9 304 1 944 124 212 87 chr9 20851281 20851367 -121420077 - AluJo SINE Alu -149 163 26 1974 81 0 0 chr9 20851370 20851604 -121419840 - AluSc SINE Alu -54 255 22 377 260 0 0 chr9 20851648 20851752 -121419692 - MER5A DNA MER1_type -80 109 6 180 288 45 0 chr9 20851978 20852044 -121419400 - L2 LINE L2 -1343 1971 1903 2102 115 34 10 chr9 20852245 20852540 -121418904 + AluSx SINE Alu 1 302 -10 204 40 0 0 chr9 20852583 20852608 -121418836 + (A)n Simple_repeat Simple_repeat 1 25 0 2773 224 91 8 chr9 20852699 20853008 -121418436 + L1M4 LINE L1 3827 4109 -2037 189 0 0 0 chr9 20853008 20853029 -121418415 + (CA)n Simple_repeat Simple_repeat 2 22 0 2773 224 91 8 chr9 20853029 20853478 -121417966 + L1M4 LINE L1 4109 4648 -1498 2145 122 0 22 chr9 20854767 20854903 -121416541 + AluSx SINE Alu 1 138 -174 1937 146 7 3 chr9 20854903 20855211 -121416233 + AluSq SINE Alu 1 309 -4 2145 122 0 22 chr9 20855211 20855393 -121416051 + AluSx SINE Alu 138 312 0 2318 90 0 3 chr9 20855396 20855686 -121415758 + AluSx SINE Alu 1 289 -23 2839 204 69 24 chr9 20856043 20856079 -121415365 - L1ME1 LINE L1 -92 6074 6041 2402 86 3 0 chr9 20856079 20856380 -121415064 + AluSp SINE Alu 1 302 -11 2839 204 69 24 chr9 20856380 20857288 -121414156 - L1ME1 LINE L1 -125 6041 5084 2217 110 0 43 chr9 20857288 20857423 -121414021 + AluSx SINE Alu 1 140 -172 2421 69 3 13 chr9 20857423 20857727 -121413717 + AluY SINE Alu 2 302 -9 2217 110 0 43 chr9 20857727 20857917 -121413527 + AluSx SINE Alu 140 312 0 2839 204 69 24 chr9 20857917 20857943 -121413501 - L1ME1 LINE L1 -1082 5084 5061 6687 162 16 111 chr9 20858049 20858371 -121413073 + L1MA3 LINE L1 3370 3721 -2584 2343 89 0 17 chr9 20858371 20858673 -121412771 + AluSq SINE Alu 1 297 -16 6687 162 16 111 chr9 20858673 20858747 -121412697 + L1MA3 LINE L1 3721 3800 -2505 1501 129 0 10 chr9 20858747 20858990 -121412454 + AluSq SINE Alu 76 316 0 6687 162 16 111 chr9 20858990 20859462 -121411982 + L1MA3 LINE L1 3800 4315 -1990 1100 82 0 7 chr9 20859462 20859597 -121411847 + AluSq/x SINE Alu 1 134 -179 1879 148 42 0 chr9 20859599 20859882 -121411562 + AluSx SINE Alu 1 295 -17 6687 162 16 111 chr9 20859882 20859943 -121411501 + L1MA3 LINE L1 4316 4381 -1924 2252 113 3 3 chr9 20859943 20860254 -121411190 + AluSx SINE Alu 1 311 -1 6687 162 16 111 chr9 20860254 20860527 -121410917 + L1MA3 LINE L1 4381 4678 -1627 1348 204 27 30 chr9 20860527 20860826 -121410618 + AluJo SINE Alu 1 298 -14 6687 162 16 111 chr9 20860826 20861399 -121410045 + L1MA3 LINE L1 4678 5304 -1001 326 170 0 0 chr9 20861399 20861452 -121409992 - Alu SINE Alu 0 302 250 6687 162 16 111 chr9 20861452 20861634 -121409810 + L1MA3 LINE L1 5304 5502 -803 2031 140 3 0 chr9 20861634 20861919 -121409525 + AluSx SINE Alu 1 286 -26 360 0 0 0 chr9 20861919 20861959 -121409485 + (CATAA)n Simple_repeat Simple_repeat 2 41 0 6687 162 16 111 chr9 20861959 20862526 -121408918 + L1MA3 LINE L1 5501 5720 -585 2455 77 3 3 chr9 20862526 20862837 -121408607 + AluSp SINE Alu 1 311 -2 6687 162 16 111 chr9 20862837 20863372 -121408072 + L1MA3 LINE L1 5720 6304 -1 2240 102 3 0 chr9 20863376 20863669 -121407775 + AluSx SINE Alu 1 294 -18 3253 237 53 17 chr9 20863689 20864174 -121407270 - L1M4 LINE L1 -2201 3945 3479 207 88 0 0 chr9 20864174 20864208 -121407236 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1648 171 44 0 chr9 20864208 20864482 -121406962 - AluJb SINE Alu -26 286 1 3253 237 53 17 chr9 20864482 20864953 -121406491 - L1M4 LINE L1 -2666 3480 2953 1189 139 0 0 chr9 20864954 20865120 -121406324 - AluSg/x SINE Alu -10 302 137 211 276 0 0 chr9 20865158 20865216 -121406228 + T-rich Low_complexity Low_complexity 3 60 0 2478 70 0 0 chr9 20865243 20865541 -121405903 - AluY SINE Alu -13 298 1 21 36 0 0 chr9 20865635 20865663 -121405781 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr9 20865670 20865705 -121405739 + AT_rich Low_complexity Low_complexity 1 35 0 2253 98 6 22 chr9 20865716 20866032 -121405412 + AluSp SINE Alu 2 312 -1 21 36 0 0 chr9 20866040 20866068 -121405376 + AT_rich Low_complexity Low_complexity 1 28 0 647 236 0 31 chr9 20866068 20866229 -121405215 - L1M4 LINE L1 -3269 2877 2722 922 130 0 20 chr9 20866229 20866375 -121405069 - FLAM_C SINE Alu 0 143 1 1232 222 67 3 chr9 20866376 20866691 -121404753 - L1M4 LINE L1 -3415 2731 2397 1635 153 0 8 chr9 20866913 20867168 -121404276 - AluJo SINE Alu -18 294 42 1837 128 0 47 chr9 20867182 20867480 -121403964 - AluSq SINE Alu -29 284 1 3323 171 102 22 chr9 20867515 20868242 -121403202 - L1MA9 LINE L1 -34 6278 5494 832 184 0 0 chr9 20868335 20868471 -121402973 - AluJo SINE Alu -176 136 1 234 105 0 0 chr9 20868573 20868611 -121402833 + Alu SINE Alu 264 301 -1 347 246 168 26 chr9 20869020 20869211 -121402233 - Charlie8 DNA MER1_type -2161 256 39 1851 157 7 7 chr9 20869292 20869585 -121401859 + AluSx SINE Alu 1 293 -19 267 31 0 0 chr9 20869585 20869617 -121401827 + (TG)n Simple_repeat Simple_repeat 2 33 0 833 208 0 31 chr9 20869737 20869896 -121401548 - FRAM SINE Alu -11 155 2 2637 94 5 27 chr9 20869918 20870290 -121401154 + THE1B LTR MaLR 1 364 0 11750 89 0 2 chr9 20870290 20871803 -121399641 + THE1B-int LTR MaLR 1 1510 -70 544 254 0 8 chr9 20871803 20871937 -121399507 + AluSq/x SINE Alu 2 134 -179 1722 96 5 5 chr9 20871937 20872157 -121399287 - AluSx SINE Alu -81 231 12 588 212 8 8 chr9 20872193 20872311 -121399133 - FLAM_C SINE Alu -24 119 2 1319 195 111 0 chr9 20872371 20872633 -121398811 + AluJo SINE Alu 1 291 -21 2370 99 0 10 chr9 20872773 20873077 -121398367 + AluSq SINE Alu 1 301 -12 1855 287 107 48 chr9 20873109 20873238 -121398206 - L2 LINE L2 -39 3274 3154 2021 125 24 0 chr9 20873238 20873525 -121397919 + AluSx SINE Alu 1 294 -18 1855 287 107 48 chr9 20873525 20873639 -121397805 - L2 LINE L2 -159 3154 3048 2322 103 0 0 chr9 20873639 20873940 -121397504 + AluSp SINE Alu 1 301 -12 1855 287 107 48 chr9 20873940 20874635 -121396809 - L2 LINE L2 -265 3048 2227 1704 184 14 7 chr9 20874635 20874928 -121396516 + AluJo SINE Alu 1 295 -17 1855 287 107 48 chr9 20874928 20875433 -121396011 - L2 LINE L2 -1086 2227 1753 207 108 0 27 chr9 20875576 20875613 -121395831 + (TAAAAA)n Simple_repeat Simple_repeat 3 38 0 491 147 266 37 chr9 20875786 20875895 -121395549 + AluJo SINE Alu 2 135 -177 632 308 31 80 chr9 20875988 20876375 -121395069 - L2 LINE L2 -2067 1247 880 221 273 61 53 chr9 20876376 20876456 -121394988 - L2 LINE L2 -2382 932 849 2411 84 0 3 chr9 20876456 20876754 -121394690 - AluSg SINE Alu -13 297 1 221 273 61 53 chr9 20876754 20876804 -121394640 - L2 LINE L2 -2465 849 801 381 200 158 91 chr9 20876804 20876849 -121394595 + MER5B DNA MER1_type 2 43 -135 2422 65 3 0 chr9 20876849 20877142 -121394302 - AluY SINE Alu -17 294 1 381 200 158 91 chr9 20877142 20877261 -121394183 + MER5B DNA MER1_type 43 177 -1 336 232 81 0 chr9 20877389 20877488 -121393956 - MIR SINE MIR -44 218 112 252 158 0 0 chr9 20877535 20877573 -121393871 + L1MEc LINE L1 2034 2071 -4325 414 55 0 0 chr9 20877573 20877628 -121393816 - Alu SINE Alu -14 298 244 2084 196 63 7 chr9 20877645 20878074 -121393370 - L1MB5 LINE L1 -36 6138 5686 1164 196 5 14 chr9 20878076 20878295 -121393149 - AluJb SINE Alu -13 299 83 1745 117 0 0 chr9 20878295 20878526 -121392918 - AluSg/x SINE Alu -13 297 67 6177 90 33 6 chr9 20878628 20880054 -121391390 - L1PA13 LINE L1 -12 6151 4712 634 121 0 0 chr9 20880090 20880181 -121391263 - AluSc SINE Alu -13 296 206 943 64 0 0 chr9 20880182 20880291 -121391153 - AluSq/x SINE Alu -203 109 1 522 103 0 0 chr9 20880346 20880424 -121391020 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 1246 136 6 0 chr9 20880432 20880609 -121390835 - AluSg/x SINE Alu -12 300 123 269 103 0 0 chr9 20881401 20881440 -121390004 + Alu SINE Alu 257 295 -5 7412 58 12 16 chr9 20881441 20883047 -121388397 + SVA Other Other 60 1386 0 299 226 0 0 chr9 20883056 20883118 -121388326 + L1ME LINE L1 5609 5670 -451 551 158 0 0 chr9 20883308 20883390 -121388054 + AluJ/FLAM SINE Alu 2 83 -229 242 163 41 0 chr9 20883427 20883525 -121387919 + (TA)n Simple_repeat Simple_repeat 1 102 0 37 52 0 0 chr9 20883563 20883621 -121387823 + AT_rich Low_complexity Low_complexity 1 58 0 207 69 0 0 chr9 20883621 20883650 -121387794 + (CA)n Simple_repeat Simple_repeat 2 30 0 532 212 212 0 chr9 20883658 20883804 -121387640 - MER58A DNA MER1_type -47 177 1 380 260 10 21 chr9 20884106 20884202 -121387242 + MIR3 SINE MIR 86 180 -28 404 299 90 6 chr9 20884808 20884975 -121386469 + MIR SINE MIR 7 187 -75 2345 108 0 0 chr9 20885220 20885525 -121385919 - AluSx SINE Alu -7 305 1 266 247 55 0 chr9 20886337 20886410 -121385034 - MIR3 SINE MIR -28 180 104 2060 152 0 0 chr9 20886566 20886868 -121384576 + AluJb SINE Alu 1 302 -10 2466 100 0 0 chr9 20887110 20887420 -121384024 + AluSg SINE Alu 1 310 0 331 291 47 27 chr9 20887443 20887591 -121383853 - MIR SINE MIR -1 261 111 2275 128 0 0 chr9 20887730 20888043 -121383401 + AluSq SINE Alu 1 313 0 890 86 0 59 chr9 20888074 20888236 -121383208 + (GGAAA)n Simple_repeat Simple_repeat 3 154 -24 2216 115 0 0 chr9 20888236 20888540 -121382904 + AluY SINE Alu 5 308 -3 890 86 0 59 chr9 20888540 20888564 -121382880 + (GGAAA)n Simple_repeat Simple_repeat 154 178 0 317 297 243 11 chr9 20888964 20889149 -121382295 - MIR SINE MIR -6 256 29 560 172 147 0 chr9 20889301 20889417 -121382027 - FLAM_A SINE Alu 0 133 1 254 140 0 20 chr9 20889760 20889810 -121381634 + (GGGGA)n Simple_repeat Simple_repeat 3 51 0 * 666 179 0 0 chr9 20889805 20889939 -121381505 + GA-rich Low_complexity Low_complexity 1 134 0 24 32 0 0 chr9 20889947 20889978 -121381466 + AT_rich Low_complexity Low_complexity 1 31 0 703 272 77 0 chr9 20890494 20890755 -121380689 + L2 LINE L2 3029 3309 -4 2062 131 3 29 chr9 20892852 20893164 -121378280 - AluSx SINE Alu -8 304 1 534 172 131 41 chr9 20893400 20893522 -121377922 - FLAM_A SINE Alu 0 133 1 2331 97 0 3 chr9 20893531 20893831 -121377613 - AluSq SINE Alu -11 302 4 1008 184 0 60 chr9 20894174 20894269 -121377175 - MER33 DNA MER1_type -2357 228 129 1682 160 6 55 chr9 20894269 20894581 -121376863 - AluJo SINE Alu -15 297 1 1008 184 0 60 chr9 20894581 20894719 -121376725 - MER33 DNA MER1_type -2456 129 9 2381 149 9 30 chr9 20894815 20895243 -121376201 - L1MB5 LINE L1 -6 6168 5750 390 120 27 67 chr9 20895248 20895323 -121376121 + MLT1A1 LTR MaLR 1 72 -293 1792 171 15 36 chr9 20895323 20895656 -121375788 + MER7A DNA MER2_type 4 327 -19 1134 239 113 7 chr9 20895619 20895929 -121375515 + MLT1A1 LTR MaLR 23 365 0 * 781 158 48 12 chr9 20895942 20896107 -121375337 - L1MB5 LINE L1 -567 5613 5443 1890 160 10 13 chr9 20896792 20897099 -121374345 - AluSx SINE Alu -6 306 1 2175 97 0 14 chr9 20897370 20897678 -121373766 - AluSq SINE Alu 0 304 1 8455 77 28 1 chr9 20897728 20899656 -121371788 - L1PA7 LINE L1 0 6154 4190 2196 90 32 26 chr9 20899749 20900059 -121371385 + AluSq SINE Alu 1 312 -1 222 312 0 13 chr9 20900361 20900438 -121371006 + GA-rich Low_complexity Low_complexity 3 78 0 2098 118 0 26 chr9 20901027 20901374 -121370070 - AluSx SINE Alu 0 312 1 1355 135 0 174 chr9 20901720 20902082 -121369362 - AluJb SINE Alu -3 299 1 626 176 0 42 chr9 20902371 20902490 -121368954 + MER81 DNA DNA 1 114 0 2272 120 0 3 chr9 20902958 20903266 -121368178 - AluSx SINE Alu -5 307 1 249 322 43 0 chr9 20903471 20903586 -121367858 + L1ME LINE L1 5524 5643 -478 840 252 69 0 chr9 20903801 20904019 -121367425 + L1MC/D LINE L1 5374 5606 -2202 1696 130 120 7 chr9 20904019 20904295 -121367149 + AluSg1 SINE Alu 1 307 -2 195 386 76 0 chr9 20904404 20904536 -121366908 + L2 LINE L2 3122 3263 -9 216 200 0 0 chr9 20904761 20904801 -121366643 + (ATG)n Simple_repeat Simple_repeat 3 42 0 506 225 138 6 chr9 20904803 20904963 -121366481 - MIR SINE MIR -4 258 78 1629 155 16 65 chr9 20905559 20905868 -121365576 - AluJo SINE Alu -18 294 1 1973 110 73 6 chr9 20905957 20906266 -121365178 + MLT1B LTR MaLR 1 328 -62 2038 107 0 30 chr9 20906266 20906577 -121364867 + AluSx SINE Alu 1 284 -28 1973 110 73 6 chr9 20906577 20906622 -121364822 + MLT1B LTR MaLR 328 369 -21 2358 96 0 3 chr9 20906731 20907044 -121364400 + AluSx SINE Alu 1 312 0 389 120 53 27 chr9 20907044 20907119 -121364325 - Tigger3(Golem) DNA MER2_type -676 2353 2277 * 471 212 50 0 chr9 20907113 20907212 -121364232 - Tigger3(Golem) DNA MER2_type -2924 105 2 2272 224 61 33 chr9 20907212 20907963 -121363481 + L1MB5 LINE L1 4501 5272 -874 508 173 0 0 chr9 20907994 20908075 -121363369 + FLAM_C SINE Alu 37 117 -26 450 53 0 0 chr9 20908075 20908132 -121363312 + (CA)n Simple_repeat Simple_repeat 2 58 0 2329 95 0 0 chr9 20908379 20908664 -121362780 + AluSx SINE Alu 1 288 -24 201 39 0 0 chr9 20908664 20908690 -121362754 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2429 86 3 0 chr9 20908906 20909209 -121362235 + AluSx SINE Alu 1 304 -8 3853 122 27 12 chr9 20909215 20909854 -121361590 + L1MB2 LINE L1 5522 6169 -2 681 185 0 31 chr9 20909864 20909994 -121361450 - FLAM_C SINE Alu -7 126 1 726 121 0 0 chr9 20910108 20910224 -121361220 + L1MB5 LINE L1 5324 5439 -741 441 132 8 139 chr9 20910224 20910353 -121361091 + FLAM_A SINE Alu 26 137 -5 2774 160 114 10 chr9 20910353 20910965 -121360479 + L1MB5 LINE L1 5490 6165 -9 1994 85 0 62 chr9 20911184 20911491 -121359953 - AluSx SINE Alu -24 288 1 474 258 0 8 chr9 20913313 20913433 -121358011 + L1M4 LINE L1 3986 4104 -2042 1118 253 88 10 chr9 20913435 20913937 -121357507 + L1M4 LINE L1 4218 4758 -1388 298 90 82 22 chr9 20913946 20914080 -121357364 + (TATAA)n Simple_repeat Simple_repeat 1 142 0 1393 209 42 76 chr9 20914080 20914382 -121357062 + L1M4 LINE L1 4752 5063 -1083 2811 6 0 10 chr9 20914382 20914696 -121356748 - AluYa5 SINE Alu 0 311 1 2065 117 14 7 chr9 20914698 20914988 -121356456 - AluSc SINE Alu -17 292 1 1393 209 42 76 chr9 20914988 20915046 -121356398 + L1M4 LINE L1 5064 5122 -1024 1597 117 0 0 chr9 20915046 20915260 -121356184 - AluSq SINE Alu -9 304 91 1393 209 42 76 chr9 20915260 20915320 -121356124 + L1M4 LINE L1 5122 5182 -964 1713 196 3 19 chr9 20915320 20915637 -121355807 - AluJb SINE Alu 0 312 1 1393 209 42 76 chr9 20915637 20915776 -121355668 + L1M4 LINE L1 5182 5297 -849 21 0 0 0 chr9 20916067 20916088 -121355356 + AT_rich Low_complexity Low_complexity 1 21 0 285 259 200 22 chr9 20917362 20917497 -121353947 - MER5A DNA MER1_type -5 184 26 1849 96 52 4 chr9 20917630 20917881 -121353563 + AluSx SINE Alu 41 303 -9 362 175 75 0 chr9 20918051 20918131 -121353313 - AluJ SINE Alu -5 297 212 846 158 82 25 chr9 20918133 20918291 -121353153 - AluJ SINE Alu -143 169 3 477 117 39 0 chr9 20919734 20919811 -121351633 - MADE1 DNA Mariner 0 80 1 1999 89 55 17 chr9 20920044 20920337 -121351107 - AluSx SINE Alu -8 304 1 408 219 59 41 chr9 20921249 20921418 -121350026 + L1MC4a LINE L1 7635 7806 -2 1668 175 27 17 chr9 20922457 20922749 -121348695 - AluJo SINE Alu -17 295 1 1957 153 34 10 chr9 20923110 20923430 -121348014 - AluJb SINE Alu 0 312 1 242 211 53 0 chr9 20923678 20923735 -121347709 + MLT1J LTR MaLR 347 406 -105 1531 186 39 7 chr9 20923776 20924055 -121347389 - AluJo SINE Alu -24 288 1 291 135 0 0 chr9 20924058 20924110 -121347334 - L1MA8 LINE L1 -5 6286 6235 1597 154 8 19 chr9 20924120 20924379 -121347065 - AluJb SINE Alu -26 286 31 374 167 0 0 chr9 20924495 20924561 -121346883 + AluS SINE Alu 1 66 -236 21 0 0 0 chr9 20924647 20924668 -121346776 + AT_rich Low_complexity Low_complexity 1 21 0 2699 168 76 20 chr9 20924792 20924924 -121346520 - L1MB8 LINE L1 -13 6165 6034 5029 223 45 69 chr9 20924924 20925166 -121346278 - L1MD3 LINE L1 -743 6214 5968 2190 109 0 13 chr9 20925166 20925470 -121345974 - AluSx SINE Alu -12 300 1 5029 223 45 69 chr9 20925470 20926411 -121345033 - L1MD3 LINE L1 -989 5968 5736 2400 48 7 10 chr9 20926411 20926704 -121344740 - AluY SINE Alu -19 292 1 5029 223 45 69 chr9 20926704 20927960 -121343484 - L1MD3 LINE L1 -1221 5736 4452 1385 153 8 50 chr9 20927964 20928099 -121343345 - L1MD3 LINE L1 -6042 817 695 2161 115 6 13 chr9 20928099 20928413 -121343031 - AluSx SINE Alu 0 312 1 1385 153 8 50 chr9 20928413 20928518 -121342926 - L1MD3 LINE L1 -6164 695 587 291 285 125 25 chr9 20928539 20928739 -121342705 - L1MC/D LINE L1 -2095 5713 5494 805 177 0 74 chr9 20928808 20928983 -121342461 - FRAM SINE Alu -10 166 5 2197 120 0 10 chr9 20928996 20929295 -121342149 - AluSx SINE Alu -16 296 1 1960 145 29 89 chr9 20929370 20929503 -121341941 + MLT1B LTR MaLR 1 140 -250 1972 90 49 21 chr9 20929503 20929791 -121341653 - AluSg1 SINE Alu -13 296 1 1960 145 29 89 chr9 20929791 20930072 -121341372 + MLT1B LTR MaLR 140 390 0 25 0 0 0 chr9 20930502 20930527 -121340917 + AT_rich Low_complexity Low_complexity 1 25 0 398 225 25 42 chr9 20930598 20930718 -121340726 - L1ME1 LINE L1 -337 5829 5712 1906 153 0 0 chr9 20930728 20931032 -121340412 - AluSx SINE Alu 0 304 1 21 0 0 0 chr9 20931300 20931321 -121340123 + AT_rich Low_complexity Low_complexity 1 21 0 442 339 12 12 chr9 20931659 20931824 -121339620 + MIR SINE MIR 21 185 -77 2195 101 37 0 chr9 20931861 20932159 -121339285 + AluSx SINE Alu 1 309 -3 2406 47 0 53 chr9 20932163 20932485 -121338959 + AluY SINE Alu 7 311 0 743 120 114 18 chr9 20932485 20932652 -121338792 + L1MCa LINE L1 1745 1927 -4499 * 2136 161 19 24 chr9 20932648 20933114 -121338330 + L1MC/D LINE L1 5299 5762 -480 572 233 99 40 chr9 20933227 20933480 -121337964 + MLT1J LTR MaLR 240 507 -4 874 202 12 97 chr9 20934321 20934613 -121336831 + L1MC5 LINE L1 6673 7028 -1014 697 195 0 8 chr9 20934627 20934745 -121336699 + FLAM_A SINE Alu 5 121 -12 840 216 76 47 chr9 20934767 20935109 -121336335 + L1MC5 LINE L1 6935 7286 -675 1042 210 106 63 chr9 20935199 20935719 -121335725 + L1MC5 LINE L1 7400 7941 -20 295 393 34 8 chr9 20936406 20936523 -121334921 + L2 LINE L2 3145 3264 -8 21 0 0 0 chr9 20937126 20937147 -121334297 + AT_rich Low_complexity Low_complexity 1 21 0 282 29 0 0 chr9 20937179 20937214 -121334230 + (TC)n Simple_repeat Simple_repeat 1 35 0 335 294 98 6 chr9 20937551 20937714 -121333730 + L1ME2 LINE L1 5987 6164 0 268 243 99 33 chr9 20938088 20938269 -121333175 + L1M3 LINE L1 4472 4664 -1482 304 307 66 21 chr9 20938424 20938711 -121332733 + L1M3 LINE L1 4860 5159 -987 2377 92 0 19 chr9 20938793 20939110 -121332334 + AluY SINE Alu 1 311 0 2171 108 30 0 chr9 20939157 20939453 -121331991 + AluSq SINE Alu 1 305 -8 267 283 108 0 chr9 20939517 20939620 -121331824 + L1M3 LINE L1 5467 5581 -590 1588 145 4 16 chr9 20940104 20940352 -121331092 - AluSx SINE Alu -67 245 1 2025 128 7 3 chr9 20940358 20940655 -121330789 - AluSx SINE Alu -13 299 2 1376 165 4 9 chr9 20940919 20941149 -121330295 - AluJo SINE Alu -83 229 1 248 258 30 0 chr9 20941710 20941776 -121329668 - L3 LINE CR1 -1081 496 429 481 249 91 10 chr9 20941956 20942153 -121329291 + L1MC4 LINE L1 7798 8010 -32 2138 111 13 10 chr9 20942167 20942474 -121328970 - AluSx SINE Alu -2 310 3 472 287 11 66 chr9 20942574 20942755 -121328689 - MER5A DNA MER1_type -1 188 18 939 97 0 15 chr9 20942939 20943073 -121328371 + FLAM_C SINE Alu 1 132 -1 338 344 37 25 chr9 20943628 20943791 -121327653 + MIR SINE MIR 21 185 -77 325 300 80 30 chr9 20944077 20944340 -121327104 - L1ME4a LINE L1 -169 5952 5677 325 242 16 102 chr9 20944392 20944520 -121326924 - L2 LINE L2 0 3313 3197 1613 166 19 4 chr9 20944597 20944862 -121326582 - AluJb SINE Alu -30 282 14 1717 156 35 0 chr9 20944902 20945190 -121326254 + AluJo SINE Alu 1 298 -14 754 273 17 0 chr9 20945683 20945855 -121325589 + MIR SINE MIR 19 193 -69 1765 124 39 0 chr9 20946570 20946827 -121324617 + AluSx SINE Alu 1 267 -45 402 290 75 0 chr9 20948607 20948714 -121322730 - L2 LINE L2 0 3272 3158 1172 233 61 3 chr9 20948882 20949178 -121322266 + MLT1A1 LTR MaLR 1 313 -52 1880 127 3 31 chr9 20949199 20949491 -121321953 + AluJb SINE Alu 2 285 -27 2102 101 32 0 chr9 20950452 20950730 -121320714 + AluSg1 SINE Alu 11 297 -12 341 253 146 0 chr9 20951146 20951324 -121320120 - L1ME4a LINE L1 -1 6120 5917 2199 107 16 16 chr9 20951396 20951569 -121319875 - AluSg SINE Alu -1 309 134 2460 76 3 0 chr9 20951569 20951870 -121319574 - AluY SINE Alu -9 302 1 2199 107 16 16 chr9 20951870 20952005 -121319439 - AluSg SINE Alu -175 135 1 3576 165 6 12 chr9 20952014 20952698 -121318746 - L1MB4 LINE L1 0 6180 5501 702 274 152 24 chr9 20952711 20953179 -121318265 + L2 LINE L2 1971 2498 -816 241 300 14 0 chr9 20954035 20954105 -121317339 - MIR SINE MIR -1 261 191 2370 101 0 0 chr9 20954250 20954557 -121316887 + AluSq SINE Alu 2 308 -5 1998 120 7 27 chr9 20954764 20955063 -121316381 + AluSq SINE Alu 1 293 -20 228 67 0 0 chr9 20955072 20955102 -121316342 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 919 250 134 67 chr9 20955105 20955372 -121316072 - L1MEd LINE L1 -4865 1254 1006 2050 146 0 3 chr9 20955372 20955673 -121315771 - AluSx SINE Alu -12 300 1 919 250 134 67 chr9 20955673 20956108 -121315336 - L1MEd LINE L1 -5113 1006 505 2314 99 0 0 chr9 20957249 20957543 -121313901 - AluY SINE Alu -13 298 5 249 274 0 0 chr9 20958154 20958238 -121313206 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 1625 183 0 15 chr9 20958252 20958520 -121312924 - AluJb SINE Alu -48 264 1 421 213 8 90 chr9 20958525 20958647 -121312797 - MER101 LTR ERV1 -250 224 113 1359 196 26 26 chr9 20958647 20958793 -121312651 - AluJb SINE Alu -47 265 115 2340 70 0 7 chr9 20958793 20959099 -121312345 + AluSq SINE Alu 1 304 0 1359 196 26 26 chr9 20959099 20959215 -121312229 - AluJb SINE Alu -196 116 1 24 67 0 0 chr9 20959221 20959266 -121312178 + AT_rich Low_complexity Low_complexity 1 45 0 509 188 0 0 chr9 20959379 20959459 -121311985 - AluS SINE Alu -233 80 1 548 254 99 6 chr9 20959520 20959701 -121311743 + MIR SINE MIR 8 205 -57 1812 90 0 4 chr9 20959806 20960040 -121311404 + AluSg1 SINE Alu 1 233 -76 1867 109 27 51 chr9 20960064 20960378 -121311066 - AluSq SINE Alu 0 307 1 2145 118 7 7 chr9 20960380 20960684 -121310760 - AluSg SINE Alu -6 304 1 2331 93 3 0 chr9 20961020 20961320 -121310124 - AluSp SINE Alu -12 301 1 716 210 0 0 chr9 20961916 20962040 -121309404 - FLAM_A SINE Alu -10 132 9 490 265 184 14 chr9 20962068 20962291 -121309153 - L2 LINE L2 -4 3309 3049 1039 66 22 7 chr9 20962291 20962427 -121309017 + AluSg/x SINE Alu 160 297 -13 180 231 77 0 chr9 20962480 20962519 -121308925 + L2 LINE L2 3263 3304 -9 352 284 115 33 chr9 20962998 20963181 -121308263 + L2 LINE L2 2849 3046 -267 1118 68 0 0 chr9 20963243 20963375 -121308069 + AluSp SINE Alu 1 132 -181 2201 99 0 0 chr9 20963377 20963660 -121307784 + AluSx SINE Alu 1 283 -29 387 0 0 0 chr9 20963663 20963706 -121307738 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2274 113 0 0 chr9 20963728 20964030 -121307414 + AluSq SINE Alu 1 302 -11 385 248 228 0 chr9 20964067 20964168 -121307276 - MIR SINE MIR -104 158 35 285 238 66 15 chr9 20964656 20964744 -121306700 - MIR SINE MIR -91 117 21 251 36 0 0 chr9 20965005 20965033 -121306411 - U6 snRNA snRNA -79 28 1 2001 138 3 3 chr9 20965418 20965715 -121305729 - AluSx SINE Alu -15 297 1 1653 168 58 0 chr9 20965741 20966015 -121305429 - AluJb SINE Alu -21 291 2 882 174 13 0 chr9 20966064 20966213 -121305231 - FRAM SINE Alu -18 158 8 791 234 41 0 chr9 20966507 20966678 -121304766 - MER5B DNA MER1_type 0 178 1 1712 186 51 51 chr9 20966917 20967348 -121304096 - MLT1D LTR MaLR 0 505 75 904 161 56 0 chr9 20967348 20967491 -121303953 - AluSg/x SINE Alu -22 290 140 294 125 0 0 chr9 20967491 20967539 -121303905 + Alu SINE Alu 252 299 -3 2372 95 0 0 chr9 20967543 20967849 -121303595 + AluSg1 SINE Alu 1 306 -3 2253 224 12 31 chr9 20967858 20968198 -121303246 + MER82 DNA MER2_type 180 510 -143 2360 60 13 20 chr9 20968198 20968499 -121302945 - AluY SINE Alu -12 299 1 2253 224 12 31 chr9 20968499 20968641 -121302803 + MER82 DNA MER2_type 510 653 0 259 182 0 0 chr9 20968662 20968706 -121302738 + L2 LINE L2 3265 3308 -5 1637 175 11 0 chr9 20968717 20968985 -121302459 + AluJb SINE Alu 1 271 -41 887 207 12 6 chr9 20969030 20969199 -121302245 + FRAM SINE Alu 1 167 -9 2243 111 7 0 chr9 20969201 20969508 -121301936 + AluSx SINE Alu 1 309 -3 585 207 78 52 chr9 20969509 20969634 -121301810 + L1MC5 LINE L1 7702 7835 -126 2257 109 10 0 chr9 20969634 20969936 -121301508 + AluSx SINE Alu 1 305 -7 585 207 78 52 chr9 20969936 20970003 -121301441 + L1MC5 LINE L1 7835 7899 -62 21 0 0 0 chr9 20970018 20970039 -121301405 + AT_rich Low_complexity Low_complexity 1 21 0 2436 87 0 0 chr9 20970039 20970338 -121301106 - AluSc SINE Alu -10 299 1 1595 186 0 42 chr9 20970370 20970682 -121300762 - AluJo SINE Alu -11 301 3 2347 105 3 3 chr9 20971035 20971348 -121300096 + AluSq SINE Alu 1 313 0 361 288 16 24 chr9 20972107 20972232 -121299212 + MIR3 SINE MIR 82 205 -3 288 181 136 136 chr9 20972252 20972429 -121299015 - L1MC5 LINE L1 -36 7925 7749 2333 64 10 0 chr9 20972505 20972802 -121298642 + AluY SINE Alu 1 300 -11 1089 221 19 0 chr9 20972986 20973199 -121298245 - MLT1F1 LTR MaLR 0 567 351 541 260 24 112 chr9 20973216 20973466 -121297978 - MLT1F1 LTR MaLR -314 228 1 245 214 146 48 chr9 20973546 20973649 -121297795 - MIR SINE MIR -108 154 42 24 0 0 0 chr9 20973652 20973676 -121297768 + AT_rich Low_complexity Low_complexity 1 24 0 1885 159 7 3 chr9 20973677 20973972 -121297472 - AluJb SINE Alu -16 296 1 506 208 0 21 chr9 20974149 20974245 -121297199 - AluJ/FLAM SINE Alu -217 95 2 1802 147 0 4 chr9 20974268 20974527 -121296917 + AluSq SINE Alu 1 258 -55 2432 82 0 3 chr9 20975355 20975658 -121295786 + AluY SINE Alu 1 302 -9 1317 122 0 0 chr9 20975660 20975848 -121295596 + AluSg/x SINE Alu 125 312 0 957 199 0 20 chr9 20975851 20976047 -121295397 - L1M4 LINE L1 -1063 5083 4892 683 136 0 39 chr9 20976048 20976151 -121295293 + AluJ/FLAM SINE Alu 2 100 -212 2440 89 0 0 chr9 20976153 20976466 -121294978 - AluSq SINE Alu 0 313 1 24 0 0 29 chr9 20976731 20976745 -121294699 + AT_rich Low_complexity Low_complexity 1 14 -20 1959 155 0 3 chr9 20976745 20977035 -121294409 - AluSx SINE Alu -23 289 1 24 0 0 29 chr9 20977035 20977055 -121294389 + AT_rich Low_complexity Low_complexity 14 34 0 1526 144 0 100 chr9 20977057 20977376 -121294068 + AluJb SINE Alu 1 287 -25 228 35 0 0 chr9 20977376 20977405 -121294039 + (TA)n Simple_repeat Simple_repeat 1 29 0 1242 213 55 55 chr9 20977799 20978090 -121293354 + AluJo SINE Alu 1 291 -11 22 35 0 0 chr9 20978137 20978166 -121293278 + AT_rich Low_complexity Low_complexity 1 29 0 2525 74 3 0 chr9 20978267 20978579 -121292865 - AluSp SINE Alu 0 313 1 318 268 79 116 chr9 20980205 20980646 -121290798 + L1M2 LINE L1 485 909 -5940 229 305 0 0 chr9 20980986 20981045 -121290399 + A-rich Low_complexity Low_complexity 1 59 0 2093 131 3 0 chr9 20981121 20981412 -121290032 - AluSq SINE Alu -21 292 1 260 270 10 20 chr9 20981413 20981513 -121289931 - L1M4 LINE L1 -2792 3354 3256 2749 211 33 24 chr9 20981531 20981927 -121289517 - L1M4 LINE L1 -2967 3179 2771 2016 104 3 69 chr9 20981927 20982245 -121289199 - AluSx SINE Alu -15 297 1 2749 211 33 24 chr9 20982245 20982569 -121288875 - L1M4 LINE L1 -3375 2771 2452 3023 131 43 124 chr9 20982569 20982847 -121288597 - Tigger3b DNA MER2_type -1797 1231 932 2257 121 0 0 chr9 20982847 20983144 -121288300 + AluSg SINE Alu 3 299 -11 1914 127 15 0 chr9 20983144 20983411 -121288033 + AluSx SINE Alu 1 271 -41 3023 131 43 124 chr9 20983411 20983835 -121287609 - Tigger3b DNA MER2_type -2094 934 585 667 138 0 0 chr9 20983845 20983939 -121287505 - FLAM_A SINE Alu -16 126 33 1184 136 149 9 chr9 20983959 20984187 -121287257 - Tigger3b DNA MER2_type -635 596 337 808 144 8 0 chr9 20984204 20984322 -121287122 + FLAM_C SINE Alu 10 128 -15 667 172 0 0 chr9 20984369 20984468 -121286976 + AluJ/FLAM SINE Alu 2 100 -212 3110 191 28 16 chr9 20984468 20985105 -121286339 - L1MC3 LINE L1 -1708 6077 5433 2211 127 0 0 chr9 20985106 20985413 -121286031 - AluSg SINE Alu -3 307 1 1952 168 5 32 chr9 20985424 20985798 -121285646 - L1MB8 LINE L1 -1 6177 5814 2190 197 56 24 chr9 20985802 20986270 -121285174 - L1MB5 LINE L1 -6 6168 5686 1152 196 5 14 chr9 20986272 20986491 -121284953 - AluJb SINE Alu -13 299 83 2392 88 0 0 chr9 20986491 20986788 -121284656 - AluSg SINE Alu -13 297 1 265 333 90 19 chr9 20986871 20987021 -121284423 + MIR3 SINE MIR 19 180 -23 1901 152 10 0 chr9 20987021 20987330 -121284114 + AluJb SINE Alu 1 312 0 183 298 35 18 chr9 20987859 20987916 -121283528 + MIR3 SINE MIR 120 177 -31 1336 257 136 8 chr9 20987925 20988403 -121283041 + L1MC4a LINE L1 5898 6436 -1372 * 2897 255 65 16 chr9 20988397 20989296 -121282148 + L1MC4 LINE L1 6687 7629 -413 989 217 96 32 chr9 20989307 20989643 -121281801 + L1MC4 LINE L1 7688 7990 -5 192 231 0 0 chr9 20992417 20992469 -121278975 + (TA)n Simple_repeat Simple_repeat 2 53 0 5064 129 39 32 chr9 20992469 20993391 -121278053 + L1MA8 LINE L1 5354 6281 -10 34 0 0 0 chr9 20993391 20993425 -121278019 + AT_rich Low_complexity Low_complexity 1 34 0 2233 112 16 0 chr9 20993811 20994114 -121277330 + AluSx SINE Alu 1 308 -4 1761 146 7 21 chr9 20994281 20994601 -121276843 + AluSq SINE Alu 1 316 0 318 265 31 10 chr9 20994866 20994964 -121276480 + MIR SINE MIR 115 214 -48 334 167 118 78 chr9 20994969 20995071 -121276373 - MIR SINE MIR -12 250 145 822 170 165 32 chr9 20995076 20995264 -121276180 + MER20 DNA MER1_type 1 213 -6 1527 168 19 23 chr9 20995316 20995578 -121275866 + AluJo SINE Alu 1 261 -51 48 18 0 0 chr9 20995583 20995638 -121275806 + AT_rich Low_complexity Low_complexity 1 55 0 779 148 31 0 chr9 20995733 20995861 -121275583 + FLAM_C SINE Alu 2 133 0 306 151 0 82 chr9 20995894 20995967 -121275477 + AluJ/FRAM SINE Alu 229 295 -7 1680 153 28 56 chr9 20995970 20996290 -121275154 + AluSx SINE Alu 1 311 -1 2241 109 0 0 chr9 20997131 20997424 -121274020 + AluSc SINE Alu 1 293 -16 2238 110 0 19 chr9 20997554 20997864 -121273580 - AluSq SINE Alu -9 304 1 2392 99 0 3 chr9 20997994 20998298 -121273146 + AluSc SINE Alu 1 303 -6 3760 193 43 4 chr9 20998839 20999576 -121271868 + L1MB8 LINE L1 5402 6167 -11 2228 93 3 3 chr9 20999576 20999865 -121271579 - AluSp SINE Alu -24 289 1 543 122 0 0 chr9 20999920 21000010 -121271434 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 2200 111 3 0 chr9 21000011 21000300 -121271144 - AluSq SINE Alu -23 290 1 348 311 64 38 chr9 21000994 21001261 -121270183 - L1ME LINE L1 -315 5806 5533 330 224 184 8 chr9 21001673 21001798 -121269646 + L1ME4a LINE L1 5715 5861 -260 199 135 0 39 chr9 21001847 21001899 -121269545 + (CATA)n Simple_repeat Simple_repeat 1 50 0 23 92 0 0 chr9 21003468 21003533 -121267911 + AT_rich Low_complexity Low_complexity 1 65 0 1616 192 14 4 chr9 21003615 21003896 -121267548 + AluJo SINE Alu 1 284 -28 2061 129 73 15 chr9 21004409 21004749 -121266695 - MER46B DNA MER2_type -1 235 1 617 329 97 84 chr9 21004815 21005186 -121266258 + L2 LINE L2 354 719 -2595 2216 99 17 0 chr9 21005186 21005479 -121265965 - AluSx SINE Alu -14 298 1 899 148 0 8 chr9 21005481 21005609 -121265835 - AluJo/FLAM SINE Alu -175 127 1 617 329 97 84 chr9 21005609 21005880 -121265564 + L2 LINE L2 719 985 -2329 2054 77 107 0 chr9 21005880 21006152 -121265292 - AluY SINE Alu -10 301 1 617 329 97 84 chr9 21006152 21006782 -121264662 + L2 LINE L2 985 1651 -1663 2169 104 45 0 chr9 21006782 21007070 -121264374 - AluSx SINE Alu -11 301 1 617 329 97 84 chr9 21007070 21007130 -121264314 + L2 LINE L2 1651 1709 -1605 198 0 0 0 chr9 21007132 21007154 -121264290 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 398 315 95 82 chr9 21007154 21007618 -121263826 + L2 LINE L2 2349 2818 -496 236 114 0 0 chr9 21007780 21007815 -121263629 + L1MC5 LINE L1 7193 7227 -734 271 276 17 43 chr9 21007891 21008007 -121263437 + L1MC4 LINE L1 7383 7495 -547 257 159 45 0 chr9 21007974 21008018 -121263426 + L1MC5 LINE L1 7292 7337 -624 * 552 210 30 36 chr9 21008018 21008134 -121263310 + MER33 DNA MER1_type 1 116 -2508 2155 118 3 3 chr9 21008134 21008430 -121263014 + AluSx SINE Alu 1 296 -16 552 210 30 36 chr9 21008430 21008592 -121262852 + MER33 DNA MER1_type 116 361 -2 993 147 0 0 chr9 21009170 21009340 -121262104 + (TA)n Simple_repeat Simple_repeat 1 170 0 330 278 22 0 chr9 21009358 21009448 -121261996 + L1MC4 LINE L1 6612 6703 -1339 2203 107 17 0 chr9 21009457 21009746 -121261698 - AluSq SINE Alu -19 294 1 1851 155 49 9 chr9 21009746 21010094 -121261350 + MLT1B LTR MaLR 26 387 -3 352 264 157 34 chr9 21010182 21010284 -121261160 - MIR SINE MIR -27 235 147 2286 110 0 7 chr9 21010284 21010592 -121260852 - AluSq SINE Alu -3 310 5 352 264 157 34 chr9 21010592 21010667 -121260777 - MIR SINE MIR -115 147 36 771 172 8 15 chr9 21011313 21011447 -121259997 + FLAM_C SINE Alu 1 133 0 1771 87 0 0 chr9 21012708 21012926 -121258518 + AluSg/x SINE Alu 82 299 -13 332 272 0 22 chr9 21013044 21013136 -121258308 - L1MC4 LINE L1 -1339 6703 6614 325 299 222 11 chr9 21013180 21013441 -121258003 + L1MEd LINE L1 38 353 -5766 2365 82 20 0 chr9 21013449 21013753 -121257691 - AluSx SINE Alu -2 310 1 1324 61 0 99 chr9 21014058 21014195 -121257249 - L1PB1 LINE L1 -1 6150 6040 2008 98 0 0 chr9 21014195 21014460 -121256984 - AluY SINE Alu -46 265 1 1324 61 0 99 chr9 21014460 21014535 -121256909 - L1PB1 LINE L1 -111 6040 5959 919 211 0 0 chr9 21014535 21014701 -121256743 - AluSg/x SINE Alu -14 298 133 265 91 23 0 chr9 21014701 21014745 -121256699 - L1PB2 LINE L1 -178 5973 5929 * 437 325 55 10 chr9 21014741 21014941 -121256503 + L1MEd LINE L1 423 631 -5488 435 289 31 8 chr9 21015168 21015296 -121256148 + MIR SINE MIR 61 191 -71 339 222 44 0 chr9 21015297 21015387 -121256057 - HsTC2 DNA Tc2 0 1898 1805 677 235 138 77 chr9 21016078 21016230 -121255214 - L1MC4 LINE L1 -1797 6011 5870 2012 151 3 0 chr9 21016230 21016535 -121254909 + AluSx SINE Alu 1 306 -6 677 235 138 77 chr9 21016535 21017080 -121254364 - L1MC4 LINE L1 -1938 5870 5272 2005 133 7 20 chr9 21017207 21017509 -121253935 + AluSx SINE Alu 1 298 -14 23 54 0 0 chr9 21017552 21017589 -121253855 + AT_rich Low_complexity Low_complexity 1 37 0 240 211 169 134 chr9 21017648 21017846 -121253598 + L1ME LINE L1 3699 3911 -2235 415 188 73 10 chr9 21017846 21017942 -121253502 - U13 snRNA snRNA -2 102 1 240 211 169 134 chr9 21017942 21018027 -121253417 + L1ME LINE L1 3911 3992 -2154 1064 184 5 0 chr9 21018057 21018247 -121253197 - MER58A DNA MER1_type -1 223 33 526 276 103 66 chr9 21018271 21018785 -121252659 + L1ME LINE L1 4030 4576 -1570 417 170 30 0 chr9 21018785 21018885 -121252559 + L1MA7 LINE L1 6184 6286 -5 526 276 103 66 chr9 21018885 21019037 -121252407 + L1ME LINE L1 4576 4721 -1425 1183 157 105 62 chr9 21019074 21019193 -121252251 - L1MB8 LINE L1 -1 6177 6065 2274 107 3 0 chr9 21019193 21019491 -121251953 - AluSp SINE Alu -14 299 1 1183 157 105 62 chr9 21019491 21019695 -121251749 - L1MB8 LINE L1 -113 6065 5840 787 273 75 20 chr9 21019938 21020537 -121250907 + L1ME LINE L1 5120 5757 -405 28 29 0 0 chr9 21020645 21020680 -121250764 + AT_rich Low_complexity Low_complexity 1 35 0 2425 92 0 0 chr9 21020840 21021144 -121250300 - AluSx SINE Alu -8 304 1 1831 168 13 0 chr9 21021211 21021514 -121249930 - AluJb SINE Alu -3 309 3 1931 125 0 21 chr9 21021549 21021886 -121249558 + AluSx SINE Alu 2 332 0 22 35 0 0 chr9 21023703 21023732 -121247712 + AT_rich Low_complexity Low_complexity 1 29 0 2352 62 0 42 chr9 21023781 21024088 -121247356 + AluY SINE Alu 1 294 -17 2148 126 3 0 chr9 21024146 21024440 -121247004 + AluSx SINE Alu 1 295 -17 602 153 0 10 chr9 21024645 21024743 -121246701 + FLAM_C SINE Alu 29 125 -18 30 45 0 0 chr9 21024743 21024787 -121246657 + AT_rich Low_complexity Low_complexity 1 44 0 331 348 71 0 chr9 21024973 21025085 -121246359 - L2 LINE L2 -3 3310 3191 907 180 87 0 chr9 21025092 21025275 -121246169 - MER58A DNA MER1_type -5 219 21 755 289 26 64 chr9 21025302 21025357 -121246087 - L2 LINE L2 -118 3195 3139 1296 171 8 4 chr9 21025357 21025591 -121245853 + MER46A DNA MER2_type 1 235 -1 755 289 26 64 chr9 21025591 21025983 -121245461 - L2 LINE L2 -174 3139 2760 2261 93 0 7 chr9 21026686 21026975 -121244469 - AluSc SINE Alu -22 287 1 524 263 15 30 chr9 21027177 21027310 -121244134 - L2 LINE L2 0 3313 3183 214 200 0 25 chr9 21027379 21027419 -121244025 + L2 LINE L2 2776 2814 -500 2277 99 7 0 chr9 21027437 21027729 -121243715 - AluSp SINE Alu -16 297 4 232 200 67 0 chr9 21027739 21027784 -121243660 - L2 LINE L2 -541 2773 2726 332 320 132 25 chr9 21028643 21028840 -121242604 - L2 LINE L2 -219 3053 2836 242 299 86 78 chr9 21028863 21029107 -121242337 - L2 LINE L2 -602 2712 2467 306 223 116 18 chr9 21029868 21029980 -121241464 + MER5C DNA MER1_type 1 123 -201 185 171 0 0 chr9 21030091 21030126 -121241318 + MER5C DNA MER1_type 272 306 -18 24 32 0 0 chr9 21030578 21030609 -121240835 + AT_rich Low_complexity Low_complexity 1 31 0 2102 101 32 0 chr9 21031987 21032265 -121239179 + AluSg1 SINE Alu 11 297 -12 341 253 146 0 chr9 21032681 21032859 -121238585 - L1ME4a LINE L1 -1 6120 5917 2199 107 16 16 chr9 21032931 21033104 -121238340 - AluSg SINE Alu -1 309 134 2460 76 3 0 chr9 21033104 21033405 -121238039 - AluY SINE Alu -9 302 1 2199 107 16 16 chr9 21033405 21033540 -121237904 - AluSg SINE Alu -175 135 1 3576 165 6 12 chr9 21033549 21034233 -121237211 - L1MB4 LINE L1 0 6180 5501 657 274 154 24 chr9 21034246 21034713 -121236731 + L2 LINE L2 1971 2498 -816 241 300 14 0 chr9 21035569 21035639 -121235805 - MIR SINE MIR -1 261 191 2370 101 0 0 chr9 21035784 21036091 -121235353 + AluSq SINE Alu 2 308 -5 1998 120 7 27 chr9 21036298 21036597 -121234847 + AluSq SINE Alu 1 293 -20 228 67 0 0 chr9 21036606 21036636 -121234808 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 919 250 134 67 chr9 21036639 21036906 -121234538 - L1MEd LINE L1 -4865 1254 1006 2050 146 0 3 chr9 21036906 21037207 -121234237 - AluSx SINE Alu -12 300 1 919 250 134 67 chr9 21037207 21037642 -121233802 - L1MEd LINE L1 -5113 1006 505 2400 94 0 0 chr9 21038783 21039082 -121232362 - AluSx SINE Alu -13 299 1 25 0 0 0 chr9 21039133 21039158 -121232286 + AT_rich Low_complexity Low_complexity 1 25 0 2137 93 3 17 chr9 21040599 21040889 -121230555 + AluSc SINE Alu 5 290 -19 327 194 0 0 chr9 21040913 21040980 -121230464 + AluJo/FLAM SINE Alu 61 127 -175 1555 139 128 19 chr9 21040982 21041248 -121230196 + AluSg SINE Alu 1 295 -15 231 36 0 0 chr9 21041255 21041283 -121230161 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 230 157 0 20 chr9 21041889 21041940 -121229504 + (CATA)n Simple_repeat Simple_repeat 2 51 0 285 202 164 0 chr9 21042276 21042380 -121229064 + L1MD1 LINE L1 4454 4574 -1572 1674 235 46 26 chr9 21042455 21043022 -121228422 + L1MD1 LINE L1 4543 5120 -1026 1554 153 19 34 chr9 21043023 21043343 -121228101 + L1MB8 LINE L1 5862 6176 -2 346 333 133 24 chr9 21043533 21043908 -121227536 + L1MC4a LINE L1 4918 5333 -813 1337 271 55 4 chr9 21043957 21044445 -121226999 + L1MC4a LINE L1 5426 5938 -1870 1850 125 58 0 chr9 21044734 21045029 -121226415 + AluSp SINE Alu 1 312 -1 504 165 52 0 chr9 21045082 21045179 -121226265 + Tigger3b DNA MER2_type 1 102 -1129 * 1253 94 69 0 chr9 21045177 21045380 -121226064 + Tigger3b DNA MER2_type 274 490 -741 607 186 52 31 chr9 21045517 21045711 -121225733 + L1MD1 LINE L1 5757 5954 -288 518 15 30 0 chr9 21046089 21046155 -121225289 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 2118 117 13 7 chr9 21046166 21046466 -121224978 - AluSx SINE Alu -10 302 1 2375 66 10 0 chr9 21046696 21046985 -121224459 - AluY SINE Alu -16 295 4 280 194 30 0 chr9 21047313 21047380 -121224064 - MLT1K LTR MaLR -7 581 513 2183 123 0 0 chr9 21048693 21048986 -121222458 - AluSx SINE Alu -19 293 1 2302 90 7 0 chr9 21049141 21049429 -121222015 - AluSp SINE Alu -23 290 1 552 212 83 16 chr9 21049445 21049638 -121221806 - L1MC5 LINE L1 -44 7917 7712 206 227 0 0 chr9 21049644 21049688 -121221756 + CT-rich Low_complexity Low_complexity 2 45 0 774 237 71 9 chr9 21049695 21049966 -121221478 - L1ME1 LINE L1 -2 6164 5881 487 186 156 18 chr9 21050087 21050254 -121221190 - L1MC5 LINE L1 -412 7549 7360 634 158 20 0 chr9 21050263 21050364 -121221080 + MER5A DNA MER1_type 10 112 -77 224 218 276 11 chr9 21050288 21050375 -121221069 - MER5A DNA MER1_type -23 166 57 * 2182 104 21 0 chr9 21050390 21050679 -121220765 + AluSx SINE Alu 1 295 -17 442 228 41 99 chr9 21051313 21051370 -121220074 - MLT1I LTR MaLR -23 386 327 2507 75 0 0 chr9 21051370 21051675 -121219769 - AluY SINE Alu -6 305 1 442 228 41 99 chr9 21051675 21051788 -121219656 - MLT1I LTR MaLR -82 327 226 2132 114 60 23 chr9 21051867 21052218 -121219226 + THE1B LTR MaLR 1 364 0 475 312 55 96 chr9 21052344 21052636 -121218808 + L2 LINE L2 2991 3270 -2 1384 143 5 19 chr9 21052755 21052965 -121218479 + AluSx SINE Alu 1 207 -105 216 0 0 0 chr9 21052997 21053021 -121218423 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 340 326 26 47 chr9 21053072 21053262 -121218182 + L2 LINE L2 2896 3081 -191 4292 73 26 16 chr9 21053354 21054376 -121217068 + MER11A LTR ERVK 1 1266 0 528 80 0 40 chr9 21054433 21054508 -121216936 + tRNA-Met-i tRNA tRNA 1 72 -3 663 141 116 16 chr9 21054521 21054642 -121216802 + FLAM_C SINE Alu 1 133 0 689 227 27 0 chr9 21054952 21055102 -121216342 - MER5A DNA MER1_type -12 177 24 24 32 0 0 chr9 21055581 21055612 -121215832 + AT_rich Low_complexity Low_complexity 1 31 0 1716 181 17 20 chr9 21055668 21055967 -121215477 + AluJb SINE Alu 1 298 -14 2173 232 62 19 chr9 21056191 21056824 -121214620 + HsTC2a DNA Tc2 4 663 -81 2073 124 23 0 chr9 21056829 21057128 -121214316 - AluSx SINE Alu -6 306 1 566 161 69 8 chr9 21057144 21057274 -121214170 - Charlie1 DNA MER1_type 0 2761 2624 623 156 9 0 chr9 21057279 21057388 -121214056 - Charlie1 DNA MER1_type -2541 220 111 2341 48 0 20 chr9 21057629 21057921 -121213523 - AluY SINE Alu -25 286 1 247 269 41 26 chr9 21058542 21058685 -121212759 + MIR SINE MIR 14 231 -31 238 280 112 49 chr9 21060643 21060786 -121210658 - MIR3 SINE MIR -32 176 25 1682 150 39 4 chr9 21060863 21061143 -121210301 + AluJo SINE Alu 1 290 -22 725 146 131 0 chr9 21061833 21061970 -121209474 - AluSg/x SINE Alu -21 291 137 340 341 61 8 chr9 21062334 21062466 -121208978 - MIR SINE MIR -90 172 34 2135 108 0 13 chr9 21062806 21063111 -121208333 + AluSx SINE Alu 1 301 -11 500 225 35 35 chr9 21063161 21063330 -121208114 - L1MC4a LINE L1 -1899 5909 5741 7008 58 12 16 chr9 21063559 21065165 -121206279 - SVA Other Other -683 1386 60 269 103 0 0 chr9 21065166 21065205 -121206239 - Alu SINE Alu -5 303 265 1170 136 6 0 chr9 21065997 21066173 -121205271 + AluSg/x SINE Alu 121 297 -13 2413 74 0 0 chr9 21066173 21066482 -121204962 + AluY SINE Alu 1 309 -2 664 183 38 23 chr9 21066491 21066622 -121204822 - FLAM_C SINE Alu 0 133 1 194 300 22 11 chr9 21066622 21066705 -121204739 + L2 LINE L2 1818 1904 -1410 432 256 62 74 chr9 21066847 21067253 -121204191 - L1ME4a LINE L1 -71 6050 5650 276 373 22 0 chr9 21068075 21068209 -121203235 + L2 LINE L2 2918 3054 -218 550 301 102 14 chr9 21068488 21068704 -121202740 + MIR SINE MIR 22 256 -6 976 201 0 0 chr9 21069191 21069355 -121202089 - FRAM SINE Alu -2 164 1 1287 95 5 26 chr9 21069750 21069939 -121201505 - AluSg/x SINE Alu -16 296 112 1079 323 65 50 chr9 21069955 21070091 -121201353 + L2 LINE L2 1656 1788 -1526 1798 129 0 31 chr9 21070091 21070378 -121201066 + AluSg SINE Alu 1 278 -32 1079 323 65 50 chr9 21070378 21070732 -121200712 + L2 LINE L2 1788 2135 -1179 2039 168 19 14 chr9 21070732 21071095 -121200349 + MLT1A1 LTR MaLR 1 365 0 1079 323 65 50 chr9 21071095 21071430 -121200014 + L2 LINE L2 2135 2495 -819 2053 116 3 13 chr9 21071442 21071753 -121199691 - AluSc SINE Alu -1 308 1 330 250 55 31 chr9 21072040 21072168 -121199276 + L2 LINE L2 3117 3247 -66 1937 96 0 67 chr9 21073243 21073420 -121198024 - AluSc SINE Alu -17 292 143 2251 79 0 19 chr9 21073420 21073736 -121197708 - AluY SINE Alu 0 311 2 1937 96 0 67 chr9 21073736 21073871 -121197573 - AluSc SINE Alu -166 143 1 267 273 136 11 chr9 21073950 21074038 -121197406 - L2 LINE L2 0 3272 3174 1783 125 7 4 chr9 21074054 21074353 -121197091 - AluSx SINE Alu 0 309 10 1232 87 34 166 chr9 21074466 21074623 -121196821 + MER30 DNA MER1_type 1 111 -119 2375 38 3 3 chr9 21074623 21074915 -121196529 - AluY SINE Alu -18 293 2 1232 87 34 166 chr9 21074915 21075022 -121196422 + MER30 DNA MER1_type 111 230 0 784 238 353 22 chr9 21075703 21076650 -121194794 - L2 LINE L2 0 3313 2038 238 263 100 12 chr9 21077267 21077347 -121194097 - MIR3 SINE MIR -39 169 83 388 230 62 0 chr9 21077958 21078071 -121193373 - L1ME2 LINE L1 -10 6154 6035 253 266 88 86 chr9 21078196 21078410 -121193034 - L1ME4a LINE L1 0 6121 5909 1582 171 0 23 chr9 21078410 21078719 -121192725 - AluJb SINE Alu -10 302 1 253 266 88 86 chr9 21078719 21078982 -121192462 - L1ME4a LINE L1 -212 5909 5643 382 343 95 44 chr9 21078987 21079261 -121192183 - L1ME4a LINE L1 -532 5589 5302 2014 107 35 0 chr9 21079264 21079554 -121191890 + AluY SINE Alu 1 300 -11 337 206 32 40 chr9 21079646 21079772 -121191672 - L1MC5 LINE L1 -65 7896 7772 312 295 60 81 chr9 21079776 21080007 -121191437 - L1ME4a LINE L1 -865 5281 5056 2189 93 0 26 chr9 21080007 21080317 -121191127 + AluSx SINE Alu 1 302 -10 312 295 60 81 chr9 21080317 21080370 -121191074 - L1ME4a LINE L1 -1090 5056 5003 302 303 81 38 chr9 21081185 21081370 -121190074 - L1M4 LINE L1 -865 5281 5089 1776 148 7 3 chr9 21083050 21083341 -121188103 - AluJb SINE Alu -20 292 1 270 0 0 0 chr9 21083593 21083623 -121187821 + (T)n Simple_repeat Simple_repeat 1 30 0 207 235 0 44 chr9 21083668 21083736 -121187708 - L2 LINE L2 -906 2408 2344 450 241 83 0 chr9 21083830 21083963 -121187481 - L1ME4a LINE L1 -13 6108 5965 2003 123 0 10 chr9 21085716 21086017 -121185427 + AluSx SINE Alu 1 298 -14 1828 168 0 0 chr9 21086201 21086505 -121184939 + AluJb SINE Alu 3 306 -6 1135 183 64 0 chr9 21086655 21086874 -121184570 + MER46A DNA MER2_type 2 234 -2 1062 206 109 29 chr9 21088265 21088576 -121182868 + MER2 DNA MER2_type 3 338 -7 825 196 0 0 chr9 21088620 21088793 -121182651 - FAM SINE Alu -4 45 1 206 343 0 0 chr9 21089268 21089338 -121182106 - MIR SINE MIR -56 206 137 337 301 0 0 chr9 21089531 21089604 -121181840 - MER2 DNA MER2_type 0 345 273 21 0 0 0 chr9 21089753 21089774 -121181670 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr9 21091726 21091782 -121179662 + GC_rich Low_complexity Low_complexity 1 56 0 621 151 83 135 chr9 21091791 21091886 -121179558 - MER2 DNA MER2_type -113 232 150 2293 106 0 0 chr9 21091886 21092198 -121179246 + AluSx SINE Alu 1 312 0 621 151 83 135 chr9 21092198 21092294 -121179150 - MER2 DNA MER2_type -195 150 51 1495 169 51 4 chr9 21092582 21092855 -121178589 - AluJo SINE Alu -26 286 1 266 311 40 70 chr9 21092974 21093202 -121178242 + L2 LINE L2 2684 2904 -410 1118 165 55 84 chr9 21093237 21093606 -121177838 - MLT1B LTR MaLR -16 374 6 2875 91 68 127 chr9 21094161 21094721 -121176723 - MER1A DNA MER1_type 0 527 1 216 111 0 0 chr9 21094926 21094962 -121176482 + (TG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 21095358 21095410 -121176034 + GC_rich Low_complexity Low_complexity 1 52 0 501 155 17 95 chr9 21095878 21095994 -121175450 - MER20 DNA MER1_type -112 107 1 425 215 43 134 chr9 21096287 21096496 -121174948 - MIR3 SINE MIR -14 194 5 824 185 35 4 chr9 21096553 21096730 -121174714 - MLT1F LTR MaLR -17 525 371 1816 161 0 3 chr9 21096737 21097035 -121174409 + AluJb SINE Alu 1 297 -15 468 175 12 0 chr9 21097059 21097139 -121174305 + MIR SINE MIR 108 188 -74 949 281 78 41 chr9 21097152 21097587 -121173857 + MLT1J LTR MaLR 1 451 -60 1881 117 48 7 chr9 21097592 21097883 -121173561 + AluSx SINE Alu 1 303 -9 279 213 40 27 chr9 21097931 21098006 -121173438 + MLT1J LTR MaLR 427 502 -9 209 152 109 0 chr9 21098153 21098199 -121173245 + MIR SINE MIR 19 69 -139 1652 200 3 7 chr9 21098226 21098531 -121172913 - AluJb SINE Alu -8 304 1 302 277 90 58 chr9 21099381 21099569 -121171875 - L1M4 LINE L1 -830 5316 5123 345 218 40 50 chr9 21099603 21099704 -121171740 - MIR SINE MIR -36 226 127 370 214 16 137 chr9 21100546 21100728 -121170716 + L2 LINE L2 2925 3084 -188 305 297 103 22 chr9 21100881 21101066 -121170378 + MIR SINE MIR 36 235 -27 470 268 39 16 chr9 21101176 21101303 -121170141 + L2 LINE L2 3184 3313 0 737 189 142 6 chr9 21101807 21101976 -121169468 + MER3 DNA MER1_type 1 192 -17 394 327 18 0 chr9 21103143 21103253 -121168191 + MIR SINE MIR 36 147 -61 1115 228 58 102 chr9 21103275 21103410 -121168034 + MLT2B1 LTR ERVL 2 141 -379 1878 128 25 0 chr9 21103410 21103692 -121167752 - AluSq SINE Alu -24 289 1 1751 160 0 23 chr9 21103697 21103997 -121167447 - AluJo SINE Alu -15 297 5 1115 228 58 102 chr9 21103997 21104334 -121167110 + MLT2B1 LTR ERVL 145 459 -61 914 18 9 0 chr9 21104335 21104447 -121166997 + (TTTTC)n Simple_repeat Simple_repeat 5 117 0 242 114 0 23 chr9 21104448 21104492 -121166952 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 1933 111 0 14 chr9 21104496 21104775 -121166669 - AluSq SINE Alu -38 275 1 335 131 49 16 chr9 21104775 21104836 -121166608 + MLT2B1 LTR ERVL 450 512 -8 2529 176 5 0 chr9 21105434 21105843 -121165601 - MLT1C LTR MaLR -56 411 1 1018 194 0 104 chr9 21105871 21106149 -121165295 - L1MC5 LINE L1 -1088 6873 6625 1956 142 0 3 chr9 21106241 21106550 -121164894 + AluSx SINE Alu 1 308 -4 385 248 91 16 chr9 21106938 21107059 -121164385 + MIR SINE MIR 90 219 -43 1892 131 3 0 chr9 21107080 21107386 -121164058 - AluSx SINE Alu 0 312 7 468 234 9 37 chr9 21107444 21107551 -121163893 - MER5B DNA MER1_type 0 178 75 2276 83 3 0 chr9 21107939 21108240 -121163204 - AluSp SINE Alu -11 302 1 2355 124 24 8 chr9 21108321 21108700 -121162744 + L1PB3 LINE L1 5704 6088 -66 372 197 0 0 chr9 21108678 21108744 -121162700 - L1PB3 LINE L1 -61 6093 6028 * 252 0 0 0 chr9 21108821 21108849 -121162595 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 687 271 33 20 chr9 21108869 21109113 -121162331 - L1ME LINE L1 -330 5791 5545 1391 285 88 25 chr9 21109285 21109323 -121162121 - L1ME3A LINE L1 -116 6054 6020 485 243 47 0 chr9 21109323 21109430 -121162014 - MER81 DNA DNA -2 112 1 1391 285 88 25 chr9 21109430 21110121 -121161323 - L1ME3A LINE L1 -150 6020 5279 607 241 74 6 chr9 21110344 21110506 -121160938 + MER5A DNA MER1_type 17 189 0 1095 164 6 0 chr9 21111144 21111321 -121160123 - AluJo/FRAM SINE Alu -3 309 132 1730 167 0 26 chr9 21111323 21111635 -121159809 - AluJo SINE Alu -8 304 1 1038 172 0 0 chr9 21113195 21113352 -121158092 - AluJb SINE Alu -19 293 137 476 261 8 8 chr9 21113358 21113475 -121157969 + MIR SINE MIR 82 198 -64 737 246 17 0 chr9 21113475 21113650 -121157794 + MER5B DNA MER1_type 1 178 0 23 0 0 0 chr9 21113690 21113713 -121157731 + AT_rich Low_complexity Low_complexity 1 23 0 266 232 71 0 chr9 21113787 21113843 -121157601 - L2 LINE L2 0 3272 3213 1636 143 189 38 chr9 21114148 21114518 -121156926 + MSTC LTR MaLR 3 428 0 1523 189 47 20 chr9 21115594 21116022 -121155422 - MLT1H LTR MaLR -3 546 1 914 282 65 3 chr9 21116235 21116529 -121154915 - L1MC4a LINE L1 -1883 5925 5614 2391 100 0 0 chr9 21116615 21116926 -121154518 - AluSq SINE Alu -2 311 1 719 193 59 0 chr9 21116933 21117052 -121154392 - FLAM_A SINE Alu -7 126 1 22 39 0 39 chr9 21117559 21117580 -121153864 + AT_rich Low_complexity Low_complexity 1 21 -28 1648 175 42 0 chr9 21117580 21117865 -121153579 + AluJb SINE Alu 3 299 -13 22 39 0 39 chr9 21117865 21117894 -121153550 + AT_rich Low_complexity Low_complexity 21 49 0 380 349 12 6 chr9 21118735 21118904 -121152540 - MER117 DNA MER1_type -24 173 4 324 0 0 0 chr9 21119109 21119145 -121152299 + (TG)n Simple_repeat Simple_repeat 1 36 0 447 226 21 0 chr9 21119318 21119411 -121152033 + MER5A DNA MER1_type 10 104 -85 1614 166 24 28 chr9 21119420 21119564 -121151880 + AluJo SINE Alu 1 144 -168 2585 116 11 26 chr9 21119564 21119945 -121151499 + THE1C LTR MaLR 1 375 0 1614 166 24 28 chr9 21119945 21120089 -121151355 + AluJo SINE Alu 144 288 -24 254 222 0 0 chr9 21120109 21120163 -121151281 + MER5A DNA MER1_type 136 189 0 229 299 0 26 chr9 21120213 21120290 -121151154 - L2 LINE L2 -25 3247 3173 1600 191 10 32 chr9 21121587 21121764 -121149680 - AluJo SINE Alu -5 307 138 1742 156 3 58 chr9 21121764 21122092 -121149352 - AluJb SINE Alu -2 310 1 1600 191 10 32 chr9 21122092 21122228 -121149216 - AluJo SINE Alu -174 138 1 342 138 231 0 chr9 21122232 21122297 -121149147 - MER3 DNA MER1_type -101 108 29 308 298 64 35 chr9 21122369 21122510 -121148934 + MIR3 SINE MIR 46 190 -18 790 211 32 0 chr9 21122856 21123012 -121148432 - MER5A DNA MER1_type 0 189 29 921 135 28 67 chr9 21124949 21125041 -121146403 - LTR32 LTR ERVL 0 471 388 2247 103 0 3 chr9 21125041 21125333 -121146111 - AluSx SINE Alu -21 291 1 921 135 28 67 chr9 21125333 21125418 -121146026 - LTR32 LTR ERVL -83 388 301 * 2103 156 24 0 chr9 21125412 21125745 -121145699 - LTR32 LTR ERVL -117 354 14 624 127 0 0 chr9 21126414 21126493 -121144951 - AluS SINE Alu -232 80 2 370 94 0 0 chr9 21126497 21126550 -121144894 + MADE1 DNA Mariner 28 80 0 306 331 46 0 chr9 21126556 21126686 -121144758 + L2 LINE L2 3137 3272 0 256 324 123 20 chr9 21128507 21128711 -121142733 - MIR SINE MIR -6 256 32 31907 101 23 58 chr9 21129559 21135921 -121135523 - L1PA7 LINE L1 -2 6152 22 403 259 98 0 chr9 21136073 21136216 -121135228 - MIR SINE MIR -3 259 103 25 75 0 0 chr9 21136804 21136857 -121134587 + AT_rich Low_complexity Low_complexity 1 53 0 2114 118 17 0 chr9 21136897 21137194 -121134250 - AluSx SINE Alu -10 302 1 304 221 23 70 chr9 21137409 21137495 -121133949 + Tigger5 DNA MER2_type 1 82 -2241 * 1461 139 34 0 chr9 21137481 21137719 -121133725 + Tigger5 DNA MER2_type 2077 2322 -1 1945 142 3 14 chr9 21138916 21139211 -121132233 + AluJo SINE Alu 1 292 -20 225 0 0 0 chr9 21140841 21140866 -121130578 + (A)n Simple_repeat Simple_repeat 1 25 0 366 258 34 0 chr9 21143526 21143615 -121127829 + L1MC4 LINE L1 6612 6703 -1339 27 49 0 0 chr9 21146081 21146122 -121125322 + AT_rich Low_complexity Low_complexity 1 41 0 190 234 21 0 chr9 21146483 21146530 -121124914 - L2 LINE L2 -2569 745 698 23 33 0 0 chr9 21147443 21147473 -121123971 + AT_rich Low_complexity Low_complexity 1 30 0 438 36 0 0 chr9 21148316 21148372 -121123072 + (CA)n Simple_repeat Simple_repeat 2 57 0 396 277 98 62 chr9 21148412 21148719 -121122725 + L1ME4a LINE L1 5591 5908 -213 2295 101 0 3 chr9 21148815 21149121 -121122323 - AluSc SINE Alu 0 309 5 229 314 38 31 chr9 21149268 21149427 -121122017 + L1ME LINE L1 5544 5703 -418 258 32 0 0 chr9 21149755 21149786 -121121658 + (TG)n Simple_repeat Simple_repeat 2 32 0 183 80 0 0 chr9 21149967 21149992 -121121452 + (TCCA)n Simple_repeat Simple_repeat 2 26 0 375 244 256 6 chr9 21150306 21150470 -121120974 + MIR SINE MIR 37 241 -21 414 290 48 60 chr9 21152004 21152226 -121119218 + MIR SINE MIR 2 222 -40 246 136 0 0 chr9 21152262 21152306 -121119138 + (T)n Simple_repeat Simple_repeat 1 44 0 1641 168 39 0 chr9 21152423 21152703 -121118741 - AluJo SINE Alu -21 291 1 262 309 79 40 chr9 21153047 21153173 -121118271 + L2 LINE L2 3183 3313 0 642 240 16 0 chr9 21153443 21153572 -121117872 + FLAM_A SINE Alu 1 131 -2 579 249 156 10 chr9 21153645 21153850 -121117594 + MIR SINE MIR 14 248 -14 2255 103 0 0 chr9 21153878 21154168 -121117276 - AluSx SINE Alu -22 290 1 198 0 0 0 chr9 21154543 21154565 -121116879 + (A)n Simple_repeat Simple_repeat 1 22 0 190 148 0 33 chr9 21154779 21154840 -121116604 + (CAAAAA)n Simple_repeat Simple_repeat 1 59 0 285 73 0 109 chr9 21155713 21155768 -121115676 - L1ME1 LINE L1 -12 6154 6106 1983 147 3 10 chr9 21155797 21156109 -121115335 - AluJb SINE Alu -2 310 1 390 175 29 87 chr9 21156123 21156226 -121115218 - L1M4 LINE L1 -642 5536 5440 4915 177 31 20 chr9 21156239 21157511 -121113933 - L1MB7 LINE L1 -10 6174 4893 515 259 95 13 chr9 21157631 21157789 -121113655 + MIR SINE MIR 3 173 -89 2202 113 3 10 chr9 21160157 21160458 -121110986 - AluSx SINE Alu -13 299 1 180 0 0 0 chr9 21160484 21160504 -121110940 + (T)n Simple_repeat Simple_repeat 1 20 0 216 227 0 0 chr9 21162034 21162078 -121109366 - L2 LINE L2 -8 3305 3262 645 250 112 18 chr9 21162127 21162351 -121109093 + MIR SINE MIR 16 260 -2 1091 213 139 32 chr9 21162359 21162484 -121108960 + MER2 DNA MER2_type 2 112 -232 1892 133 6 41 chr9 21162484 21162801 -121108643 - AluSp SINE Alu -7 306 1 1091 213 139 32 chr9 21162801 21162985 -121108459 + MER2 DNA MER2_type 112 344 0 290 317 77 0 chr9 21163035 21163139 -121108305 + MIR SINE MIR 22 133 -129 * 293 247 65 0 chr9 21163123 21163200 -121108244 + L2 LINE L2 3232 3313 0 1377 219 38 19 chr9 21163763 21164221 -121107223 + MLT1H LTR MaLR 1 549 0 324 304 94 7 chr9 21164446 21164584 -121106860 - MIR3 SINE MIR -9 199 50 236 233 17 33 chr9 21164616 21164676 -121106768 + MIR SINE MIR 36 94 -114 7560 87 21 3 chr9 21164768 21166555 -121104889 - L1PA7 LINE L1 -3 6466 4660 23 33 0 0 chr9 21166576 21166606 -121104838 + AT_rich Low_complexity Low_complexity 1 30 0 44005 32 21 1 chr9 21166606 21172636 -121098808 - L1PA2 LINE L1 0 6155 3 24365 117 42 31 chr9 21172638 21176034 -121095410 - L1PA7 LINE L1 -1785 4676 1139 2225 114 3 0 chr9 21176034 21176342 -121095102 - AluY SINE Alu -2 309 1 24365 117 42 31 chr9 21176342 21177494 -121093950 - L1PA7 LINE L1 -5322 1139 1 294 96 19 39 chr9 21177528 21177580 -121093864 + L2 LINE L2 3262 3312 -1 200 59 29 0 chr9 21178230 21178264 -121093180 + (GA)n Simple_repeat Simple_repeat 2 36 0 235 253 107 0 chr9 21178748 21178823 -121092621 + MIR SINE MIR 47 129 -133 2603 221 13 63 chr9 21179680 21180301 -121091143 + MLT1G LTR MaLR 1 590 0 345 117 0 0 chr9 21180379 21180439 -121091005 - L1MA4A LINE L1 -5 6298 6239 1792 135 53 3 chr9 21181252 21181555 -121089889 - L1MA4A LINE L1 0 6303 5986 187 278 189 0 chr9 21184020 21184110 -121087334 + MIR3 SINE MIR 4 110 -98 1492 129 27 99 chr9 21184364 21184698 -121086746 + MLT1B LTR MaLR 21 330 -60 1393 135 5 0 chr9 21184720 21184927 -121086517 - MER2 DNA MER2_type -135 210 3 799 268 158 17 chr9 21184928 21185283 -121086161 + MLT1J LTR MaLR 35 439 -72 316 231 26 0 chr9 21185573 21185651 -121085793 + MLT1J LTR MaLR 429 508 -3 2108 116 21 0 chr9 21186072 21186357 -121085087 + AluSq SINE Alu 5 295 -18 265 246 224 22 chr9 21187406 21187540 -121083904 - MIR3 SINE MIR -15 193 33 1765 204 165 9 chr9 21187694 21188131 -121083313 + LTR22 LTR ERVK 1 505 -4 1653 144 65 38 chr9 21188216 21188508 -121082936 - AluJb SINE Alu -12 300 1 283 260 27 0 chr9 21189456 21189529 -121081915 + MIR SINE MIR 170 244 -18 1029 206 37 124 chr9 21190679 21191103 -121080341 + MLT1B LTR MaLR 1 390 0 180 0 0 0 chr9 21191303 21191323 -121080121 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 291 28 0 0 chr9 21191322 21191358 -121080086 + (GA)n Simple_repeat Simple_repeat 2 37 0 1978 123 0 14 chr9 21191358 21191635 -121079809 - AluSx SINE Alu -39 273 1 2198 89 17 7 chr9 21191842 21192135 -121079309 - AluSg SINE Alu -14 296 1 1575 199 3 7 chr9 21193238 21193529 -121077915 + AluJo SINE Alu 11 300 -12 495 118 0 0 chr9 21194201 21194277 -121077167 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 1606 163 11 21 chr9 21194280 21194563 -121076881 - AluJb SINE Alu -32 280 1 204 167 0 0 chr9 21194922 21194970 -121076474 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 11592 36 8 0 chr9 21195428 21197522 -121073922 + L1PA5 LINE L1 4050 6149 -5 2560 53 3 0 chr9 21197670 21197970 -121073474 + AluY SINE Alu 1 301 -10 23 54 0 0 chr9 21198078 21198115 -121073329 + AT_rich Low_complexity Low_complexity 1 37 0 869 250 102 0 chr9 21198886 21199102 -121072342 - MIR SINE MIR 0 262 25 452 232 72 14 chr9 21199332 21199470 -121071974 - L1MC4a LINE L1 -1850 5958 5813 1045 198 50 5 chr9 21199512 21199714 -121071730 - MER58C DNA MER1_type -1 214 4 180 308 77 11 chr9 21199788 21199879 -121071565 + L2 LINE L2 2688 2784 -530 511 315 152 32 chr9 21199907 21200564 -121070880 + L2 LINE L2 2538 3271 -1 262 330 91 35 chr9 21200605 21200802 -121070642 + L2 LINE L2 2840 3047 -225 488 271 0 45 chr9 21201064 21201197 -121070247 - MIR SINE MIR -43 219 93 183 313 73 73 chr9 21201915 21201936 -121069508 - MER5A DNA MER1_type -1 188 168 570 228 144 18 chr9 21201936 21202103 -121069341 + MER5A DNA MER1_type 2 189 0 183 313 73 73 chr9 21202103 21202231 -121069213 - MER5A DNA MER1_type -20 169 39 553 252 38 97 chr9 21202279 21202395 -121069049 + MIR SINE MIR 37 158 -104 2124 82 58 24 chr9 21202395 21202688 -121068756 + AluSx SINE Alu 3 305 -7 553 252 38 97 chr9 21202688 21202743 -121068701 + MIR SINE MIR 158 193 -69 1941 149 174 14 chr9 21202743 21203111 -121068333 + MSTA LTR MaLR 1 427 -1 553 252 38 97 chr9 21203111 21203176 -121068268 + MIR SINE MIR 193 260 -2 402 333 38 21 chr9 21203352 21203538 -121067906 - MER5A DNA MER1_type 0 189 1 405 0 0 0 chr9 21203891 21203936 -121067508 + (CA)n Simple_repeat Simple_repeat 2 46 0 231 36 0 0 chr9 21203935 21203963 -121067481 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 284 328 25 8 chr9 21204398 21204517 -121066927 + MIR3 SINE MIR 51 171 -37 510 194 7 211 chr9 21204767 21205056 -121066388 + MIR SINE MIR 7 236 -26 342 289 54 13 chr9 21206307 21206456 -121064988 - L1ME4a LINE L1 -3 6118 5964 497 92 5 0 chr9 21207879 21207947 -121063497 + Tigger4(Zombi) DNA MER2_type 268 2731 0 2999 134 6 27 chr9 21208132 21208226 -121063218 + L1PB1 LINE L1 5686 5780 -371 217 68 45 0 chr9 21208226 21208270 -121063174 + (TA)n Simple_repeat Simple_repeat 1 46 0 2999 134 6 27 chr9 21208270 21208651 -121062793 + L1PB1 LINE L1 5780 6151 0 216 271 0 75 chr9 21209560 21209667 -121061777 + GA-rich Low_complexity Low_complexity 2 100 0 387 312 0 44 chr9 21211075 21211241 -121060203 + MIR3 SINE MIR 11 170 -38 267 383 19 0 chr9 21211836 21211990 -121059454 + MIR SINE MIR 96 252 -10 1159 244 101 40 chr9 21213185 21213935 -121057509 + L2 LINE L2 2449 3256 -57 294 129 0 0 chr9 21214679 21214741 -121056703 + (A)n Simple_repeat Simple_repeat 1 62 0 242 319 33 33 chr9 21214741 21214832 -121056612 - L2 LINE L2 -48 3224 3134 602 25 25 0 chr9 21215032 21215111 -121056333 - L1HS LINE L1 -2 6153 6073 27 49 0 0 chr9 21215111 21215152 -121056292 + AT_rich Low_complexity Low_complexity 1 41 0 1914 235 60 5 chr9 21215559 21216080 -121055364 - L1MC4a LINE L1 -721 7087 6604 199 189 0 38 chr9 21217567 21217620 -121053824 + L2 LINE L2 3261 3311 -2 255 61 0 0 chr9 21218567 21218600 -121052844 + (T)n Simple_repeat Simple_repeat 1 33 0 2148 120 0 0 chr9 21219084 21219376 -121052068 + AluSx SINE Alu 1 292 -20 1070 273 23 48 chr9 21219387 21219779 -121051665 + L1MC4a LINE L1 5517 5898 -1910 367 243 75 9 chr9 21220330 21220437 -121051007 - L3 LINE CR1 -126 1451 1338 685 274 162 76 chr9 21220725 21221353 -121050091 + L2 LINE L2 290 971 -2343 1153 233 114 18 chr9 21221353 21221740 -121049704 + L2 LINE L2 1982 2405 -909 1300 237 68 70 chr9 21221779 21222282 -121049162 + MLT1J LTR MaLR 7 508 -3 738 53 0 0 chr9 21222872 21222967 -121048477 + (CCTA)n Simple_repeat Simple_repeat 4 98 0 200 300 114 0 chr9 21223381 21223451 -121047993 + L2 LINE L2 3192 3269 -3 339 315 165 15 chr9 21223556 21223756 -121047688 + L2 LINE L2 3043 3272 0 302 328 16 16 chr9 21224153 21224275 -121047169 + MIR SINE MIR 20 141 -121 249 397 41 26 chr9 21224580 21224774 -121046670 + L2 LINE L2 3073 3269 -3 204 67 0 0 chr9 21224883 21224913 -121046531 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 413 214 101 75 chr9 21225507 21225666 -121045778 - MER103 DNA DNA -1 165 3 22 0 0 0 chr9 21226795 21226817 -121044627 + AT_rich Low_complexity Low_complexity 1 22 0 237 132 0 0 chr9 21229066 21229104 -121042340 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 250 0 0 chr9 21231364 21231416 -121040028 + LTR30 LTR ERV1 1 52 -670 916 154 64 94 chr9 21231416 21231792 -121039652 + LTR12 LTR ERV1 53 285 -429 299 236 0 0 chr9 21231793 21231865 -121039579 + LTR30 LTR ERV1 553 624 -98 704 185 25 0 chr9 21231865 21231984 -121039460 + LTR12 LTR ERV1 359 480 -234 519 287 106 17 chr9 21232099 21232336 -121039108 + MIR SINE MIR 5 262 0 540 267 193 5 chr9 21232470 21232672 -121038772 + MIR SINE MIR 5 244 -18 1038 273 4 19 chr9 21233056 21233316 -121038128 + MIR SINE MIR 4 259 -3 941 237 17 17 chr9 21236129 21236365 -121035079 - MIR SINE MIR -20 242 7 231 36 0 0 chr9 21237049 21237077 -121034367 + (CA)n Simple_repeat Simple_repeat 2 29 0 2237 108 3 10 chr9 21237840 21238147 -121033297 + AluSx SINE Alu 1 305 -7 247 286 99 56 chr9 21238903 21239064 -121032380 + MIR SINE MIR 25 141 -67 180 0 0 0 chr9 21239165 21239185 -121032259 + (TC)n Simple_repeat Simple_repeat 1 20 0 315 130 0 0 chr9 21239185 21239239 -121032205 + (CA)n Simple_repeat Simple_repeat 2 55 0 2194 133 6 26 chr9 21240121 21240467 -121030977 - MER1B DNA MER1_type 0 339 1 203 354 0 0 chr9 21240853 21240949 -121030495 + GA-rich Low_complexity Low_complexity 3 98 0 440 259 144 73 chr9 21241263 21241727 -121029717 - L2 LINE L2 0 3313 2817 299 184 29 10 chr9 21241788 21241891 -121029553 + GA-rich Low_complexity Low_complexity 1 105 0 658 269 80 9 chr9 21242355 21242567 -121028877 + MIR SINE MIR 18 244 -18 209 167 83 0 chr9 21242535 21242571 -121028873 + L2 LINE L2 3217 3255 -17 * 899 215 17 130 chr9 21242653 21242748 -121028696 - MIR SINE MIR 0 262 158 785 185 0 22 chr9 21242748 21242883 -121028561 - FLAM_A SINE Alu 0 133 2 899 215 17 130 chr9 21242883 21243080 -121028364 - MIR SINE MIR -104 158 3 875 176 0 0 chr9 21243136 21243267 -121028177 + FLAM_A SINE Alu 1 131 -2 184 305 34 0 chr9 21243396 21243455 -121027989 + MIR SINE MIR 92 152 -110 211 380 38 0 chr9 21243638 21243717 -121027727 + L3b LINE CR1 1405 1486 -97 213 154 0 0 chr9 21244048 21244087 -121027357 + (TAA)n Simple_repeat Simple_repeat 1 39 0 548 246 72 82 chr9 21244191 21244435 -121027009 + MIR SINE MIR 3 256 -6 1845 250 51 26 chr9 21244937 21245445 -121025999 + MLT1H1 LTR MaLR 27 547 -8 396 0 0 0 chr9 21246400 21246444 -121025000 + (CA)n Simple_repeat Simple_repeat 1 44 0 1043 257 15 15 chr9 21246639 21246900 -121024544 - MIR SINE MIR 0 262 2 184 257 0 0 chr9 21247003 21247038 -121024406 + MIR SINE MIR 86 120 -142 414 323 88 80 chr9 21247044 21247419 -121024025 - L2 LINE L2 -32 3240 2863 1522 160 157 3 chr9 21247454 21247748 -121023696 - MER1B DNA MER1_type 0 339 1 220 231 15 0 chr9 21247831 21247896 -121023548 + (TA)n Simple_repeat Simple_repeat 1 66 0 287 257 43 0 chr9 21247947 21248017 -121023427 - Charlie7 DNA MER1_type -2508 104 32 640 287 42 38 chr9 21248156 21248421 -121023023 - L2 LINE L2 -525 2789 2524 274 288 104 24 chr9 21248528 21248653 -121022791 - MIR SINE MIR -106 156 22 494 329 18 22 chr9 21250312 21250540 -121020904 - MIR SINE MIR -21 241 15 450 291 63 24 chr9 21252922 21253235 -121018209 + L1ME4a LINE L1 5727 6057 -64 221 106 0 21 chr9 21255700 21255747 -121015697 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2391 107 0 0 chr9 21256083 21256392 -121015052 - AluSq SINE Alu -4 309 1 1514 188 0 38 chr9 21257947 21258239 -121013205 - AluJo SINE Alu -31 281 1 290 242 55 11 chr9 21258290 21258381 -121013063 - Charlie7 DNA MER1_type -2487 125 31 1452 121 74 5 chr9 21259128 21259343 -121012101 + MER30 DNA MER1_type 1 230 0 659 243 60 32 chr9 21259437 21259622 -121011822 - MIR SINE MIR -44 218 29 330 263 7 109 chr9 21260301 21260438 -121011006 - L2 LINE L2 0 3313 3191 22 56 0 0 chr9 21260820 21260856 -121010588 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr9 21261156 21261181 -121010263 + AT_rich Low_complexity Low_complexity 1 25 0 348 333 122 6 chr9 21261420 21261600 -121009844 + L2 LINE L2 3072 3272 0 516 235 34 0 chr9 21262753 21262872 -121008572 - L2 LINE L2 0 3313 3191 3922 210 48 110 chr9 21263031 21263931 -121007513 - L1MD2 LINE L1 -3 6356 5461 774 161 0 0 chr9 21263931 21264055 -121007389 - FLAM_C SINE Alu 0 143 20 3922 210 48 110 chr9 21264055 21264489 -121006955 - L1MD2 LINE L1 -898 5461 5002 379 236 36 18 chr9 21264562 21264672 -121006772 - MIR SINE MIR -114 148 37 2458 85 3 0 chr9 21264687 21264993 -121006451 - AluSp SINE Alu -6 307 1 296 283 83 57 chr9 21266070 21266300 -121005144 - L1MC4 LINE L1 -24 8018 7783 900 123 0 18 chr9 21266662 21266825 -121004619 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 2037 132 13 19 chr9 21266828 21267139 -121004305 - AluSx SINE Alu -3 309 1 245 277 0 15 chr9 21267251 21267316 -121004128 + Charlie4 DNA MER1_type 1892 1955 -6 228 286 38 86 chr9 21268094 21268199 -121003245 - MIR SINE MIR -57 151 52 357 280 102 19 chr9 21268421 21268578 -121002866 - MIR SINE MIR -57 205 36 25 31 0 0 chr9 21268959 21268991 -121002453 + AT_rich Low_complexity Low_complexity 1 32 0 360 304 41 46 chr9 21269053 21269247 -121002197 + MIR SINE MIR 56 248 -14 769 195 138 53 chr9 21269646 21269892 -121001552 + MLT1H LTR MaLR 1 267 -282 1104 228 89 57 chr9 21270911 21271315 -121000129 + MER96B DNA MER1_type 1 417 0 410 305 54 18 chr9 21271319 21271486 -120999958 - L2 LINE L2 -535 2779 2607 190 271 19 65 chr9 21271475 21271582 -120999862 + L2 LINE L2 1863 1964 -1350 * 339 256 144 56 chr9 21271632 21271812 -120999632 + L2 LINE L2 2156 2351 -963 1497 99 0 0 chr9 21271923 21272115 -120999329 - AluSg/x SINE Alu -15 295 104 377 239 103 45 chr9 21272189 21272344 -120999100 + L2 LINE L2 2373 2536 -778 2583 61 0 0 chr9 21273074 21273385 -120998059 - AluY SINE Alu 0 311 1 204 40 0 0 chr9 21273389 21273414 -120998030 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 21273588 21273609 -120997835 + AT_rich Low_complexity Low_complexity 1 21 0 645 272 67 42 chr9 21274764 21275003 -120996441 - MIR SINE MIR -10 252 8 25 51 0 0 chr9 21275195 21275234 -120996210 + AT_rich Low_complexity Low_complexity 1 39 0 203 278 0 0 chr9 21276238 21276292 -120995152 - MIR3 SINE MIR -49 159 106 303 320 87 6 chr9 21276305 21276477 -120994967 + MIR SINE MIR 21 206 -56 495 48 0 0 chr9 21277454 21277516 -120993928 + (CA)n Simple_repeat Simple_repeat 1 62 0 345 297 36 9 chr9 21278550 21278661 -120992783 - MIR SINE MIR -86 176 63 192 40 0 0 chr9 21279407 21279432 -120992012 + (A)n Simple_repeat Simple_repeat 1 25 0 385 304 119 26 chr9 21280357 21280584 -120990860 + MIR SINE MIR 15 262 0 315 49 0 0 chr9 21281228 21281269 -120990175 + (TG)n Simple_repeat Simple_repeat 1 41 0 715 316 39 13 chr9 21281640 21281874 -120989570 - MIR SINE MIR -10 252 13 263 284 15 0 chr9 21282079 21282146 -120989298 - MIR3 SINE MIR -26 182 115 2445 177 73 25 chr9 21282664 21283144 -120988300 + MLT1D LTR MaLR 3 505 0 307 164 0 18 chr9 21283246 21283301 -120988143 - L2 LINE L2 0 3272 3219 200 222 44 0 chr9 21283802 21283847 -120987597 + L2 LINE L2 3264 3310 -3 270 311 0 0 chr9 21284100 21284174 -120987270 + L2 LINE L2 3194 3267 -5 1068 208 77 80 chr9 21284335 21284672 -120986772 - L1ME1 LINE L1 -6 6160 5825 230 102 82 82 chr9 21284940 21284989 -120986455 + MER20B DNA MER1_type 685 733 -50 487 276 7 26 chr9 21286149 21286301 -120985143 + MER117 DNA MER1_type 12 160 -37 1338 81 29 0 chr9 21287787 21287961 -120983483 - L1PA8 LINE L1 -3 6169 5991 197 377 29 51 chr9 21287970 21288108 -120983336 + L2 LINE L2 2926 3060 -212 1084 190 22 35 chr9 21288125 21288351 -120983093 - AluJo SINE Alu -5 307 85 326 247 0 0 chr9 21288912 21288985 -120982459 - MIR SINE MIR -86 176 104 1199 265 106 47 chr9 21289004 21289385 -120982059 + LTR33 LTR ERVL 15 431 -90 1999 216 68 9 chr9 21289385 21289824 -120981620 + MLT1C LTR MaLR 3 467 0 1199 265 106 47 chr9 21289824 21289914 -120981530 + LTR33 LTR ERVL 431 514 -7 602 265 26 0 chr9 21291199 21291350 -120980094 - MIR SINE MIR -39 223 69 1253 176 83 23 chr9 21292488 21292789 -120978655 - MER33 DNA MER1_type -4 320 2 211 310 40 20 chr9 21293020 21293120 -120978324 + L2 LINE L2 2879 2980 -292 463 257 37 7 chr9 21293543 21293679 -120977765 - MIR SINE MIR -74 188 49 2230 154 33 35 chr9 21294943 21295403 -120976041 + MLT1C LTR MaLR 8 466 -1 257 331 72 24 chr9 21295606 21295857 -120975587 - L2 LINE L2 -656 2658 2396 221 308 11 55 chr9 21295970 21296025 -120975419 + MIR SINE MIR 68 119 -143 1289 153 32 130 chr9 21296025 21296364 -120975080 - AluJb SINE Alu -6 306 1 221 308 11 55 chr9 21296364 21296399 -120975045 + MIR SINE MIR 119 154 -108 1970 149 3 3 chr9 21296529 21296818 -120974626 + AluJb SINE Alu 1 289 -23 260 336 102 57 chr9 21297643 21298027 -120973417 + L2 LINE L2 2304 2704 -610 453 264 19 0 chr9 21298646 21298752 -120972692 - MIR SINE MIR -107 155 48 454 121 172 50 chr9 21298963 21299062 -120972382 - FRAM SINE Alu -18 158 48 181 329 36 73 chr9 21299212 21299349 -120972095 + L2 LINE L2 3182 3313 0 284 267 42 50 chr9 21299722 21299842 -120971602 + MER20 DNA MER1_type 86 204 -15 2146 176 65 48 chr9 21299842 21300337 -120971107 - MLT1D LTR MaLR -2 503 1 560 269 110 0 chr9 21300902 21301087 -120970357 - MIR SINE MIR -26 236 33 11912 150 45 9 chr9 21301484 21303829 -120967615 - L1PBa LINE L1 -1523 5339 3079 327 49 0 0 chr9 21303829 21303870 -120967574 + (TG)n Simple_repeat Simple_repeat 2 42 0 1962 145 0 3 chr9 21303870 21304153 -120967291 - AluSx SINE Alu -28 284 3 11912 150 45 9 chr9 21304153 21306814 -120964630 - L1PBa LINE L1 -3782 3080 1 227 253 121 0 chr9 21306826 21306909 -120964535 + MIR3 SINE MIR 2 94 -114 5304 108 1 4 chr9 21307278 21307998 -120963446 + L1PA13 LINE L1 5435 6152 -11 327 169 15 103 chr9 21308098 21308293 -120963151 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 344 233 38 19 chr9 21308173 21308332 -120963112 + (TA)n Simple_repeat Simple_repeat 1 162 0 394 303 113 31 chr9 21308405 21308600 -120962844 + MIR SINE MIR 37 247 -15 328 252 72 9 chr9 21309699 21309810 -120961634 + MIR SINE MIR 109 226 -36 2044 170 30 0 chr9 21309835 21310244 -120961200 + MLT2B1 LTR ERVL 3 476 -39 477 62 0 0 chr9 21310244 21310309 -120961135 + (TG)n Simple_repeat Simple_repeat 2 66 0 2044 170 30 0 chr9 21310309 21310346 -120961098 + MLT2B1 LTR ERVL 476 510 -5 181 282 0 0 chr9 21310461 21310500 -120960944 - MIR SINE MIR -9 253 215 * 207 250 19 58 chr9 21310468 21310520 -120960924 - L2 LINE L2 -22 3291 3242 240 272 206 15 chr9 21310640 21310776 -120960668 - L2 LINE L2 -236 3036 2875 315 0 0 0 chr9 21311257 21311292 -120960152 + (TG)n Simple_repeat Simple_repeat 2 36 0 919 239 89 44 chr9 21311292 21311952 -120959492 + L2 LINE L2 2529 3265 -48 200 178 67 67 chr9 21313554 21313599 -120957845 - MIR SINE MIR -11 251 207 1222 224 12 0 chr9 21315197 21315452 -120955992 + L1PA15 LINE L1 4082 4339 -1807 6058 92 21 7 chr9 21315491 21316863 -120954581 + L1PA15 LINE L1 4316 5702 -463 2675 105 14 0 chr9 21316863 21317233 -120954211 + THE1C LTR MaLR 1 375 0 6058 92 21 7 chr9 21317233 21317702 -120953742 + L1PA15 LINE L1 5702 6163 -2 458 296 80 17 chr9 21318610 21318786 -120952658 + MIR SINE MIR 20 206 -56 347 288 210 10 chr9 21319434 21319639 -120951805 - MIR SINE MIR -3 259 14 1320 183 112 48 chr9 21320172 21320574 -120950870 + MLT2B1 LTR ERVL 7 475 -40 344 58 0 77 chr9 21320614 21320666 -120950778 + MLT2D LTR ERVL 367 414 0 * 778 301 59 70 chr9 21320666 21321119 -120950325 + MLT1K LTR MaLR 84 531 -57 294 50 0 0 chr9 21321324 21321364 -120950080 + (GA)n Simple_repeat Simple_repeat 1 40 0 817 196 80 20 chr9 21323049 21323248 -120948196 + L2 LINE L2 3103 3313 0 351 257 57 57 chr9 21323333 21323473 -120947971 + MIR SINE MIR 72 211 -51 186 43 0 0 chr9 21323486 21323509 -120947935 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 696 65 0 11 chr9 21323512 21323605 -120947839 - L1PA5 LINE L1 -8 6146 6055 886 38 0 0 chr9 21323605 21323710 -120947734 + L1P2 LINE L1 5653 5757 -397 25 0 0 0 chr9 21323820 21323845 -120947599 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr9 21324187 21324217 -120947227 + AT_rich Low_complexity Low_complexity 1 30 0 220 231 19 0 chr9 21324218 21324270 -120947174 + CT-rich Low_complexity Low_complexity 3 55 0 330 329 104 24 chr9 21325135 21325299 -120946145 + HAL1 LINE L1 380 556 -1951 988 159 87 36 chr9 21325483 21325678 -120945766 + MER20 DNA MER1_type 15 219 0 293 184 57 162 chr9 21325681 21325909 -120945535 + HAL1 LINE L1 750 953 -1554 639 301 32 57 chr9 21325914 21326316 -120945128 + L1ME3A LINE L1 5552 5943 -227 2366 108 3 48 chr9 21326360 21326713 -120944731 + MER1B DNA MER1_type 1 337 0 253 136 0 0 chr9 21327056 21327100 -120944344 + HAL1 LINE L1 971 1014 -1493 22 0 0 0 chr9 21327188 21327210 -120944234 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr9 21327235 21327268 -120944176 + AT_rich Low_complexity Low_complexity 1 33 0 1525 110 26 0 chr9 21327638 21327865 -120943579 + L1PA11 LINE L1 5942 6174 0 2068 130 25 25 chr9 21328522 21328883 -120942561 + MER46B DNA MER2_type 1 236 0 220 284 99 0 chr9 21329003 21329084 -120942360 - L2 LINE L2 0 3272 3184 296 308 48 10 chr9 21329287 21329391 -120942053 - MIR SINE MIR -60 148 41 219 330 73 9 chr9 21329398 21329507 -120941937 - L2 LINE L2 -9 3263 3148 231 200 0 0 chr9 21329753 21329798 -120941646 + L1ME4a LINE L1 5508 5552 -569 813 228 100 36 chr9 21329819 21330210 -120941234 + L1ME4a LINE L1 5704 6119 -2 241 295 105 65 chr9 21330309 21330509 -120940935 + MIR SINE MIR 15 222 -40 274 361 39 0 chr9 21330563 21330693 -120940751 + MIR SINE MIR 54 188 -74 480 267 17 17 chr9 21331772 21331888 -120939556 + LTR16C LTR ERVL 161 276 -215 613 200 0 15 chr9 21331888 21332018 -120939426 - MLT1D LTR MaLR 0 505 378 192 333 60 43 chr9 21332388 21332505 -120938939 + MIR SINE MIR 34 152 -110 687 181 39 126 chr9 21333066 21333268 -120938176 + MER113 DNA MER1_type? 4 171 -350 466 114 23 0 chr9 21333268 21333356 -120938088 + L1MA8 LINE L1 6198 6287 -4 687 181 39 126 chr9 21333356 21333462 -120937982 + MER113 DNA MER1_type? 171 285 -236 445 328 23 0 chr9 21333637 21333765 -120937679 - MIR SINE MIR -111 151 21 264 320 173 7 chr9 21334507 21334657 -120936787 + MER5A DNA MER1_type 12 186 -3 21 0 0 0 chr9 21335204 21335225 -120936219 + AT_rich Low_complexity Low_complexity 1 21 0 6179 17 0 17 chr9 21336061 21336785 -120934659 - L1P LINE L1 -3218 2928 2216 2597 30 3 0 chr9 21336785 21337083 -120934361 - AluY SINE Alu -12 299 1 6179 17 0 17 chr9 21337083 21337108 -120934336 - L1P LINE L1 -3930 2216 2192 20283 29 7 0 chr9 21337108 21340316 -120931128 + L1PA4 LINE L1 2936 6152 -3 350 340 78 64 chr9 21340600 21341268 -120930176 - L2 LINE L2 0 3272 2595 1014 260 0 4 chr9 21341486 21341713 -120929731 + Charlie1 DNA MER1_type 2 227 -2534 651 185 7 15 chr9 21341713 21341848 -120929596 + Charlie1 DNA MER1_type 2628 2761 0 414 244 41 8 chr9 21342594 21342717 -120928727 + MER3 DNA MER1_type 79 205 -4 880 276 180 36 chr9 21342980 21343160 -120928284 + L2 LINE L2 2804 2957 -356 1128 202 28 0 chr9 21343160 21343373 -120928071 - MER20 DNA MER1_type 0 219 1 880 276 180 36 chr9 21343373 21343637 -120927807 + L2 LINE L2 2957 3312 -1 22 0 0 0 chr9 21343851 21343873 -120927571 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr9 21344833 21344867 -120926577 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 842 259 12 8 chr9 21345049 21345296 -120926148 - L1MA9 LINE L1 -40 6272 6025 328 260 150 0 chr9 21346758 21346858 -120924586 - L2 LINE L2 -5 3308 3194 2329 100 0 0 chr9 21348380 21348680 -120922764 - AluSg SINE Alu -10 300 1 1952 135 0 55 chr9 21348690 21349016 -120922428 - AluJb SINE Alu -4 308 1 322 89 0 0 chr9 21350499 21350544 -120920900 - MADE1 DNA Mariner 0 80 36 28 48 0 0 chr9 21350606 21350648 -120920796 + AT_rich Low_complexity Low_complexity 1 42 0 405 0 0 0 chr9 21351243 21351288 -120920156 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 21353810 21353831 -120917613 + AT_rich Low_complexity Low_complexity 1 21 0 734 219 120 11 chr9 21355485 21355668 -120915776 + MER20 DNA MER1_type 17 219 0 719 257 18 27 chr9 21357803 21358025 -120913419 + L2 LINE L2 3094 3313 0 297 139 0 0 chr9 21358508 21358551 -120912893 - tRNA-Arg-CGC tRNA tRNA -32 44 2 5703 121 34 11 chr9 21359482 21360421 -120911023 + L1MA5A LINE L1 5332 6292 -5 183 184 0 0 chr9 21360520 21360558 -120910886 + L2 LINE L2 2995 3032 -281 262 238 68 0 chr9 21360654 21360736 -120910708 + L1ME4a LINE L1 5564 5637 -484 21 57 0 0 chr9 21360759 21360794 -120910650 + AT_rich Low_complexity Low_complexity 1 35 0 392 300 126 40 chr9 21360813 21361090 -120910354 + L1ME4a LINE L1 5669 5969 -152 328 311 215 19 chr9 21361574 21361720 -120909724 + MIR SINE MIR 4 120 -142 1213 165 103 96 chr9 21361720 21361922 -120909522 + MLT1B LTR MaLR 1 209 -181 273 57 0 0 chr9 21361922 21361957 -120909487 + (TG)n Simple_repeat Simple_repeat 1 35 0 1213 165 103 96 chr9 21361957 21362141 -120909303 + MLT1B LTR MaLR 209 390 0 328 311 215 19 chr9 21362141 21362203 -120909241 + MIR SINE MIR 120 253 -9 254 188 179 36 chr9 21362352 21362464 -120908980 + MIR SINE MIR 132 259 -3 21 0 0 0 chr9 21362860 21362881 -120908563 + AT_rich Low_complexity Low_complexity 1 21 0 529 159 28 0 chr9 21362881 21362988 -120908456 - L1MA7 LINE L1 -1 6290 6181 702 259 149 4 chr9 21364192 21364447 -120906997 - L2 LINE L2 -9 3304 3013 5475 31 7 0 chr9 21364505 21365204 -120906240 - L1PA4 LINE L1 -1207 4939 4236 7349 31 11 1 chr9 21365204 21366421 -120905023 + L1PA4 LINE L1 4930 6155 0 849 270 95 33 chr9 21366423 21366962 -120904482 + L1ME3A LINE L1 1918 2481 -3734 1704 178 0 43 chr9 21366962 21367265 -120904179 + AluJo SINE Alu 1 290 -22 849 270 95 33 chr9 21367265 21367488 -120903956 + L1ME3A LINE L1 2481 2689 -3526 1244 220 67 22 chr9 21367563 21367967 -120903477 - Zaphod DNA AcHobo -15 4016 3595 * 2225 230 74 48 chr9 21367965 21368885 -120902559 - Zaphod DNA AcHobo -3041 990 47 305 245 45 39 chr9 21368889 21369044 -120902400 + L1ME3A LINE L1 4197 4352 -1863 465 215 1 1 chr9 21369046 21369155 -120902289 - L1MC/D LINE L1 -366 5804 5695 * 1739 258 75 24 chr9 21369151 21369242 -120902202 + L1ME3A LINE L1 4387 4472 -1743 2044 116 0 20 chr9 21369242 21369534 -120901910 + AluSg SINE Alu 1 286 -24 1739 258 75 24 chr9 21369534 21370369 -120901075 + L1ME3A LINE L1 4472 5361 -854 2246 243 97 13 chr9 21370372 21371071 -120900373 + L1ME3A LINE L1 5424 6181 -58 369 207 69 28 chr9 21371134 21371279 -120900165 + L1MC5 LINE L1 7785 7935 -26 660 247 85 18 chr9 21371560 21371783 -120899661 + LTR50 LTR ERVL 1 238 -557 602 240 142 13 chr9 21371818 21372130 -120899314 + LTR50 LTR ERVL 201 795 0 182 365 42 0 chr9 21372979 21373075 -120898369 - MIR SINE MIR -142 120 21 567 293 83 4 chr9 21374858 21375111 -120896333 - MER102a DNA MER1_type -4 326 54 2091 145 92 8 chr9 21375365 21375758 -120895686 + MSTB LTR MaLR 1 426 0 692 253 27 11 chr9 21375815 21376001 -120895443 + MER5A DNA MER1_type 1 189 0 218 281 32 70 chr9 21376212 21376356 -120895088 - MIR SINE MIR -95 113 16 316 176 49 29 chr9 21376368 21376470 -120894974 - L1ME4a LINE L1 -1 6120 6017 27 29 0 0 chr9 21376643 21376677 -120894767 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr9 21377532 21377562 -120893882 + AT_rich Low_complexity Low_complexity 1 30 0 585 211 111 64 chr9 21377803 21377974 -120893470 + MIR SINE MIR 80 258 -4 580 283 61 24 chr9 21378200 21378412 -120893032 - MIR SINE MIR -20 242 23 219 103 0 0 chr9 21379080 21379119 -120892325 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 321 285 209 19 chr9 21379232 21379390 -120892054 + L3b LINE CR1 1274 1461 -122 225 49 73 49 chr9 21379826 21379867 -120891577 - MER110A LTR ERV1 -4 464 423 774 177 50 6 chr9 21380001 21380182 -120891262 + MER53 DNA DNA 1 189 0 182 243 149 65 chr9 21380520 21380627 -120890817 - L2 LINE L2 -840 2474 2359 420 327 118 66 chr9 21380684 21381562 -120889882 + L2 LINE L2 2295 3221 -51 493 279 32 37 chr9 21381572 21381762 -120889682 - MIR SINE MIR 0 262 74 342 241 43 91 chr9 21381764 21381951 -120889493 + MER5B DNA MER1_type 1 178 0 373 288 24 29 chr9 21382900 21383070 -120888374 + MIR SINE MIR 23 191 -71 192 77 0 0 chr9 21383101 21383127 -120888317 + (GA)n Simple_repeat Simple_repeat 1 26 0 743 241 6 11 chr9 21383132 21383306 -120888138 - MIR SINE MIR -56 206 34 22 0 0 0 chr9 21385051 21385073 -120886371 + AT_rich Low_complexity Low_complexity 1 22 0 591 282 206 0 chr9 21385473 21385682 -120885762 + MIR SINE MIR 8 259 -3 568 178 7 44 chr9 21386882 21387017 -120884427 - MLT1E3 LTR MaLR 0 624 495 860 182 18 18 chr9 21387309 21387479 -120883965 - FRAM SINE Alu -6 170 1 2505 142 25 14 chr9 21388093 21388531 -120882913 + MSTB2 LTR MaLR 15 457 0 483 280 42 0 chr9 21390063 21390181 -120881263 - L2 LINE L2 -2 3311 3189 801 260 100 11 chr9 21390492 21390773 -120880671 + L2 LINE L2 1387 1692 -1622 3176 76 5 5 chr9 21390774 21391207 -120880237 - L1PA7 LINE L1 -1 6153 5721 1911 100 4 0 chr9 21391207 21391478 -120879966 + L1PA5 LINE L1 5881 6152 -2 29412 112 15 62 chr9 21391490 21391864 -120879580 - L1P3 LINE L1 -423 5731 5341 251 28 28 0 chr9 21391864 21391900 -120879544 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 5126 40 3 2 chr9 21391900 21392519 -120878925 - L1PA4 LINE L1 -13 6142 5523 29412 112 15 62 chr9 21392519 21398165 -120873279 - L1P3 LINE L1 -811 5343 10 2526 144 67 2 chr9 21398219 21398621 -120872823 - MSTC LTR MaLR 0 428 1 3879 161 76 5 chr9 21401127 21402037 -120869407 + L1MB7 LINE L1 5204 6184 0 488 262 14 7 chr9 21402920 21403061 -120868383 - MIR SINE MIR -48 214 73 327 237 132 9 chr9 21403624 21403738 -120867706 - MIR3 SINE MIR -4 204 77 701 317 5 20 chr9 21404387 21404586 -120866858 - MER91A DNA MER1_type 0 196 1 347 274 70 43 chr9 21404631 21404861 -120866583 - MER112 DNA MER1_type -24 236 1 283 329 60 13 chr9 21404960 21405109 -120866335 + MIR SINE MIR 23 178 -84 189 0 0 0 chr9 21405734 21405755 -120865689 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 229 257 294 5 chr9 21406078 21406292 -120865152 + L1ME4a LINE L1 5591 5866 -255 306 274 42 71 chr9 21406411 21406579 -120864865 + L1ME4a LINE L1 5935 6097 -24 1101 246 111 73 chr9 21407110 21407918 -120863526 + L1MEd LINE L1 418 1256 -4949 560 334 73 14 chr9 21407920 21408264 -120863180 + L1MEd LINE L1 1329 1692 -4704 2198 73 3 22 chr9 21408474 21408788 -120862656 + AluY SINE Alu 4 311 0 2285 99 0 3 chr9 21408957 21409260 -120862184 - AluSg SINE Alu -8 302 1 299 264 84 30 chr9 21409449 21409485 -120861959 + L1MEd LINE L1 2059 2092 -4123 2170 58 47 0 chr9 21409485 21409761 -120861683 + AluY SINE Alu 14 302 -9 299 264 84 30 chr9 21409761 21410054 -120861390 + L1MEd LINE L1 2092 2360 -3855 261 368 0 0 chr9 21410177 21410264 -120861180 + GA-rich Low_complexity Low_complexity 2 88 0 484 296 30 18 chr9 21411572 21411741 -120859703 - MIR SINE MIR -7 255 85 721 211 46 0 chr9 21415978 21416130 -120855314 + MIR SINE MIR 79 237 -25 21 0 0 0 chr9 21416589 21416610 -120854834 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 21417778 21417807 -120853637 + GC_rich Low_complexity Low_complexity 1 29 0 582 182 8 16 chr9 21418965 21419086 -120852358 - FLAM_A SINE Alu -5 137 18 729 154 62 20 chr9 21419103 21419298 -120852146 - L1MC5 LINE L1 -30 7931 7729 745 176 16 132 chr9 21419299 21419618 -120851826 + L1MC5 LINE L1 6815 7096 -865 225 203 0 0 chr9 21419723 21419782 -120851662 - L1M4 LINE L1 -1072 5074 5016 541 277 97 76 chr9 21419923 21420346 -120851098 - MLT1J LTR MaLR -58 453 22 2029 99 13 56 chr9 21421284 21421586 -120849858 + AluSq SINE Alu 5 293 -20 274 283 168 9 chr9 21421866 21421979 -120849465 + L2 LINE L2 3141 3271 -1 1126 281 76 13 chr9 21422015 21422396 -120849048 - MLT1I LTR MaLR -4 405 1 421 174 248 0 chr9 21422492 21422601 -120848843 - MIR SINE MIR -106 156 21 1584 115 91 35 chr9 21423190 21423477 -120847967 + L1PA15 LINE L1 5863 6165 0 21 0 0 0 chr9 21423742 21423763 -120847681 + AT_rich Low_complexity Low_complexity 1 21 0 187 179 0 89 chr9 21424342 21424398 -120847046 - L3 LINE CR1 -206 1371 1321 352 265 52 80 chr9 21424439 21424698 -120846746 - HAL1 LINE L1 -140 2367 2117 3807 20 9 2 chr9 21424698 21425148 -120846296 + L1PA4 LINE L1 5703 6155 0 352 265 52 80 chr9 21425148 21425212 -120846232 - HAL1 LINE L1 -390 2117 2053 2177 259 74 72 chr9 21425301 21426789 -120844655 - HAL1 LINE L1 -698 1809 319 505 185 50 17 chr9 21426801 21426920 -120844524 - MLT1E2 LTR MaLR -2 624 502 369 250 109 0 chr9 21427320 21427448 -120843996 - HAL1b LINE L1 -690 658 517 261 0 0 0 chr9 21427466 21427495 -120843949 + (CA)n Simple_repeat Simple_repeat 1 29 0 456 294 153 64 chr9 21427495 21427934 -120843510 - HAL1b LINE L1 -867 481 4 1076 219 100 9 chr9 21428696 21429016 -120842428 - MLT1C LTR MaLR -2 465 117 239 291 110 0 chr9 21429533 21429660 -120841784 - L1ME LINE L1 -302 5819 5679 6337 65 0 0 chr9 21429904 21430684 -120840760 - LTR17 LTR ERV1 0 780 1 2036 184 11 8 chr9 21431664 21432028 -120839416 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr9 21432382 21432406 -120839038 + AT_rich Low_complexity Low_complexity 1 24 0 283 167 39 0 chr9 21432733 21432811 -120838633 - L1MB7 LINE L1 -4 6180 6100 2642 216 47 54 chr9 21432922 21433816 -120837628 - L1M4 LINE L1 -1425 4721 3834 566 355 59 17 chr9 21434065 21434355 -120837089 - L3 LINE CR1 -826 751 450 374 276 95 0 chr9 21434386 21434491 -120836953 + L2 LINE L2 3199 3313 0 192 273 0 18 chr9 21434532 21434587 -120836857 - L3 LINE CR1 -1194 383 330 419 243 95 14 chr9 21434649 21434797 -120836647 - MER69A DNA AcHobo -7 170 11 25 0 0 0 chr9 21434973 21434998 -120836446 + AT_rich Low_complexity Low_complexity 1 25 0 198 269 129 86 chr9 21435076 21435169 -120836275 + MIR3 SINE MIR 6 102 -106 2103 171 79 46 chr9 21435174 21435731 -120835713 - LTR24B LTR ERV1 -17 593 1 210 340 53 11 chr9 21435732 21435826 -120835618 + MIR3 SINE MIR 96 193 -15 3645 109 71 12 chr9 21438291 21438869 -120832575 + LTR9 LTR ERV1 1 612 0 28 61 0 0 chr9 21439734 21439783 -120831661 + AT_rich Low_complexity Low_complexity 1 49 0 1356 177 105 15 chr9 21439895 21440229 -120831215 + MLT1A1 LTR MaLR 2 365 0 396 240 101 16 chr9 21440285 21440414 -120831030 - L1ME LINE L1 -4129 2132 1993 352 204 37 75 chr9 21440414 21440494 -120830950 - AluS SINE Alu -243 60 1 701 306 24 0 chr9 21440723 21441014 -120830430 - L1ME LINE L1 -4604 1657 1360 350 276 71 47 chr9 21441077 21441429 -120830015 - L1ME LINE L1 -4905 1165 802 2015 149 17 3 chr9 21442185 21442486 -120828958 - AluSx SINE Alu -7 305 1 2063 153 14 14 chr9 21442514 21442879 -120828565 + MLT1A1 LTR MaLR 1 365 0 344 296 74 40 chr9 21443005 21443181 -120828263 - MLT1J LTR MaLR -327 184 3 198 0 0 0 chr9 21444826 21444848 -120826596 + (T)n Simple_repeat Simple_repeat 1 22 0 571 311 123 4 chr9 21445063 21445298 -120826146 - MLT1J2 LTR MaLR -118 332 70 2822 130 12 0 chr9 21445379 21445802 -120825642 - MSTA LTR MaLR 0 428 1 193 259 56 0 chr9 21445828 21445882 -120825562 + L2 LINE L2 3257 3313 0 37 86 0 0 chr9 21446327 21446420 -120825024 + AT_rich Low_complexity Low_complexity 1 93 0 1582 158 13 76 chr9 21446592 21446908 -120824536 - AluJo SINE Alu -10 302 7 5509 161 13 12 chr9 21447274 21448860 -120822584 + L1PB1 LINE L1 4195 5794 -357 663 78 0 0 chr9 21448860 21448950 -120822494 + (TA)n Simple_repeat Simple_repeat 1 90 0 5509 161 13 12 chr9 21448950 21449308 -120822136 + L1PB1 LINE L1 5794 6150 -1 26 0 0 0 chr9 21449308 21449334 -120822110 + AT_rich Low_complexity Low_complexity 1 26 0 387 100 0 0 chr9 21449334 21449394 -120822050 + L1PB1 LINE L1 6090 6149 -2 194 0 39 0 chr9 21449402 21449428 -120822016 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 273 169 0 0 chr9 21449547 21449606 -120821838 + (TG)n Simple_repeat Simple_repeat 2 60 0 307 286 36 24 chr9 21451798 21451966 -120819478 + LTR16B LTR ERVL 289 458 -6 750 185 159 26 chr9 21452069 21452164 -120819280 - L1MC4 LINE L1 0 8042 7961 279 0 0 0 chr9 21452164 21452195 -120819249 + (TG)n Simple_repeat Simple_repeat 2 32 0 750 185 159 26 chr9 21452195 21452326 -120819118 - L1MC4 LINE L1 -81 7961 7786 1123 117 0 43 chr9 21452333 21452527 -120818917 + AluSc SINE Alu 126 312 0 7090 62 7 0 chr9 21452564 21454052 -120817392 + L1PA8 LINE L1 4667 6159 -13 311 187 112 37 chr9 21454053 21454160 -120817284 - L1MC4 LINE L1 -265 7777 7663 187 163 0 102 chr9 21454188 21454237 -120817207 - L2 LINE L2 -8 3305 3262 22 0 0 0 chr9 21454672 21454694 -120816750 + AT_rich Low_complexity Low_complexity 1 22 0 1298 210 10 86 chr9 21455299 21455694 -120815750 - MLT1A1 LTR MaLR 0 365 1 27 29 0 0 chr9 21456354 21456388 -120815056 + AT_rich Low_complexity Low_complexity 1 34 0 251 196 0 0 chr9 21456397 21456453 -120814991 + HsTC2 DNA Tc2 1 56 -1842 1165 165 11 36 chr9 21457027 21457322 -120814122 + L1MA4 LINE L1 6030 6305 0 276 306 12 0 chr9 21458221 21458306 -120813138 + MIR SINE MIR 165 250 -12 279 0 0 0 chr9 21458532 21458563 -120812881 + (CA)n Simple_repeat Simple_repeat 2 32 0 510 280 13 25 chr9 21459082 21459239 -120812205 - MIR SINE MIR -30 232 78 1495 172 7 123 chr9 21459531 21459944 -120811500 - MLT1A1 LTR MaLR 0 365 1 4099 34 4 0 chr9 21461195 21461844 -120809600 + L1P2 LINE L1 4874 5526 -629 * 31444 43 1 9 chr9 21461818 21465892 -120805552 + L1P LINE L1 7 4055 -2091 2931 13 0 0 chr9 21465892 21466210 -120805234 + AluYb8 SINE Alu 1 318 0 31444 43 1 9 chr9 21466210 21467176 -120804268 + L1P LINE L1 4055 5027 -1119 288 0 0 0 chr9 21467176 21467208 -120804236 + (CA)n Simple_repeat Simple_repeat 1 32 0 1205 128 0 6 chr9 21467209 21467381 -120804063 + AluSg/x SINE Alu 133 303 -9 442 194 0 9 chr9 21467382 21467490 -120803954 - L1M4 LINE L1 -1676 4470 4364 2905 39 0 0 chr9 21467501 21468061 -120803383 + L1P2 LINE L1 5031 5590 -565 1412 203 87 6 chr9 21468462 21468783 -120802661 + MER7A DNA MER2_type 2 346 0 1528 201 117 17 chr9 21469350 21469753 -120801691 - L1ME2 LINE L1 -9 6155 5713 1141 279 120 3 chr9 21469816 21470182 -120801262 - L2 LINE L2 -3 3310 2902 708 199 44 16 chr9 21470262 21470437 -120801007 + LTR41 LTR ERVL 3 181 -614 3692 289 26 3 chr9 21470437 21471454 -120799990 + ERVL LTR ERVL 3972 5012 -752 1978 120 0 37 chr9 21471940 21472240 -120799204 + AluSq SINE Alu 1 289 -24 5770 117 11 7 chr9 21472246 21474225 -120797219 - L1PA16 LINE L1 -9 6860 4867 3716 230 25 9 chr9 21474227 21475418 -120796026 - L1PA16 LINE L1 -2908 3941 2733 1754 164 17 7 chr9 21475466 21475753 -120795691 + AluJb SINE Alu 1 290 -22 301 336 107 15 chr9 21477057 21477188 -120794256 + MIR SINE MIR 49 191 -71 189 220 153 59 chr9 21477639 21477757 -120793687 - L2 LINE L2 -17 3296 3168 21 36 0 0 chr9 21478087 21478115 -120793329 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 21478867 21478891 -120792553 + AT_rich Low_complexity Low_complexity 1 24 0 1891 216 70 17 chr9 21479172 21479654 -120791790 - L1MB8 LINE L1 0 6178 5671 717 73 0 0 chr9 21479654 21479750 -120791694 + (TA)n Simple_repeat Simple_repeat 2 97 0 2029 135 14 3 chr9 21479750 21480046 -120791398 - AluSq SINE Alu -14 299 1 25194 156 16 14 chr9 21480067 21485666 -120785778 - L1PA10 LINE L1 -15 6468 818 1568 235 64 43 chr9 21485750 21486189 -120785255 - MLT1D LTR MaLR -57 448 1 1357 205 35 55 chr9 21486189 21486624 -120784820 - L1PA15 LINE L1 -1599 5045 4620 5524 135 8 4 chr9 21486624 21488237 -120783207 + L1PA15 LINE L1 5039 6660 -3 20698 148 25 14 chr9 21488240 21495347 -120776097 + L1MA2 LINE L1 15 7339 -384 1732 44 5 0 chr9 21495347 21495552 -120775892 - AluY SINE Alu -1 310 105 20698 148 25 14 chr9 21495552 21495942 -120775502 + L1MA2 LINE L1 7339 7723 0 3234 238 64 51 chr9 21495982 21496349 -120775095 - L1MEc LINE L1 -2576 4068 3707 2256 97 0 3 chr9 21496349 21496659 -120774785 + AluSc SINE Alu 1 309 0 3234 238 64 51 chr9 21496659 21497706 -120773738 - L1MEc LINE L1 -2937 3707 2633 1782 177 3 0 chr9 21497706 21498000 -120773444 - AluJo SINE Alu -15 297 3 3234 238 64 51 chr9 21498000 21498027 -120773417 - L1MEc LINE L1 -4011 2633 2608 313 251 21 7 chr9 21498046 21498179 -120773265 - L1MDa LINE L1 -4711 1829 1688 751 293 78 25 chr9 21498251 21498736 -120772708 - L1MEc LINE L1 -4271 2554 2044 4745 158 46 6 chr9 21498743 21499842 -120771602 - L1MB7 LINE L1 -21 6163 5016 672 255 81 23 chr9 21499837 21500096 -120771348 - L1MEc LINE L1 -4737 1909 1636 * 466 231 0 40 chr9 21500141 21500314 -120771130 - L1MEc LINE L1 -5083 1459 1294 264 147 40 27 chr9 21501933 21502008 -120769436 + CT-rich Low_complexity Low_complexity 4 79 0 729 100 16 68 chr9 21502009 21502199 -120769245 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 207 200 27 27 chr9 21502199 21502274 -120769170 + CT-rich Low_complexity Low_complexity 4 78 0 1626 116 0 0 chr9 21502712 21502937 -120768507 - AluSg/x SINE Alu 0 310 86 189 0 0 0 chr9 21503641 21503662 -120767782 + (A)n Simple_repeat Simple_repeat 1 21 0 364 339 43 25 chr9 21504028 21504423 -120767021 - Charlie4 DNA MER1_type -1126 835 434 360 64 0 0 chr9 21505010 21505057 -120766387 + (TG)n Simple_repeat Simple_repeat 1 47 0 2171 116 151 5 chr9 21507202 21507574 -120763870 + MSTA LTR MaLR 3 428 0 822 284 168 11 chr9 21509239 21509591 -120761853 - L2 LINE L2 -683 2631 2225 777 253 76 4 chr9 21509598 21509823 -120761621 + MIR SINE MIR 4 244 -18 836 314 95 6 chr9 21509850 21510188 -120761256 - L2 LINE L2 -1093 2221 1854 727 293 105 23 chr9 21510597 21511034 -120760410 - L1ME4a LINE L1 -232 5889 5417 270 179 15 172 chr9 21512203 21512281 -120759163 + MIR3 SINE MIR 82 132 -76 2082 71 0 0 chr9 21512281 21512536 -120758908 - AluY SINE Alu -18 293 39 270 179 15 172 chr9 21512536 21512591 -120758853 + MIR3 SINE MIR 132 194 -14 302 183 146 0 chr9 21512672 21512754 -120758690 + L2 LINE L2 2128 2221 -1093 2311 137 8 3 chr9 21513316 21513680 -120757764 + MER47A DNA MER2_type 1 366 0 238 346 168 15 chr9 21513751 21513953 -120757491 - MLT1K LTR MaLR -172 416 184 294 182 91 45 chr9 21514171 21514259 -120757185 - MIR SINE MIR -75 187 96 4098 202 16 56 chr9 21514305 21515161 -120756283 - L1PA13 LINE L1 -5 6158 5337 6155 75 12 0 chr9 21515161 21515961 -120755483 + L1PA10 LINE L1 5344 6153 -15 1032 155 21 0 chr9 21515961 21516148 -120755296 - L1PA14 LINE L1 -791 5355 5165 * 2426 122 66 4 chr9 21516147 21516885 -120754559 + L1PA14 LINE L1 5335 6146 -5 909 248 126 39 chr9 21517582 21518018 -120753426 - MLT2F LTR ERVL -189 474 1 180 0 0 0 chr9 21518125 21518145 -120753299 + (TTA)n Simple_repeat Simple_repeat 3 22 0 957 337 140 14 chr9 21518323 21518952 -120752492 + L2 LINE L2 476 1183 -2131 485 254 26 62 chr9 21518952 21519145 -120752299 - MLT1F LTR MaLR -356 186 1 632 280 156 21 chr9 21519145 21519427 -120752017 + L2 LINE L2 1888 2207 -1107 733 120 10 0 chr9 21519456 21519556 -120751888 - FLAM_A SINE Alu -32 110 10 1081 305 110 19 chr9 21519557 21520095 -120751349 + L2 LINE L2 2199 2785 -529 994 159 137 13 chr9 21520124 21520351 -120751093 - MSTB LTR MaLR -4 428 174 1024 160 0 0 chr9 21520358 21520508 -120750936 + FRAM SINE Alu 5 154 -22 1008 151 11 27 chr9 21520525 21520711 -120750733 - MSTB LTR MaLR -241 185 3 764 351 20 44 chr9 21520768 21521263 -120750181 + L2 LINE L2 2824 3306 -7 370 202 39 48 chr9 21521497 21521601 -120749843 - MIR SINE MIR -123 139 37 379 245 31 75 chr9 21522296 21522455 -120748989 - MIR SINE MIR -27 235 84 340 161 69 35 chr9 21522461 21522548 -120748896 - MLT1J LTR MaLR -1 510 421 1015 270 60 3 chr9 21522592 21522911 -120748533 - MLT1J LTR MaLR -166 345 9 227 310 0 0 chr9 21523277 21523335 -120748109 + L2 LINE L2 3215 3272 0 252 86 0 0 chr9 21524281 21524316 -120747128 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 682 265 0 41 chr9 21525276 21525472 -120745972 - MIR SINE MIR -65 197 10 403 300 38 25 chr9 21525477 21525637 -120745807 + MIR SINE MIR 63 224 -38 24 0 0 0 chr9 21526243 21526267 -120745177 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 21526358 21526393 -120745051 + AT_rich Low_complexity Low_complexity 1 35 0 431 257 88 58 chr9 21526420 21526634 -120744810 - MIR SINE MIR -44 218 5 656 305 43 30 chr9 21526705 21527033 -120744411 - MLT2E LTR ERVL 0 628 297 2561 72 0 0 chr9 21527215 21527522 -120743922 + AluY SINE Alu 1 307 -4 692 363 67 3 chr9 21527599 21527988 -120743456 - LTR67 LTR ERVL -35 522 109 2453 91 40 43 chr9 21528373 21528748 -120742696 - THE1C LTR MaLR -1 374 1 328 302 0 19 chr9 21529034 21529140 -120742304 - LTR67 LTR ERVL -452 105 2 483 347 32 18 chr9 21529229 21529448 -120741996 + MIR SINE MIR 29 250 -12 249 345 117 81 chr9 21529852 21530094 -120741350 - L2 LINE L2 -11 3261 3004 4605 133 22 82 chr9 21530094 21531076 -120740368 - MER49 LTR ERV1 0 923 1 249 345 117 81 chr9 21531076 21531140 -120740304 - L2 LINE L2 -268 3004 2944 1273 204 39 74 chr9 21531905 21532268 -120739176 - MLT1A2 LTR MaLR -24 350 1 502 178 50 0 chr9 21532868 21532969 -120738475 + MER5A DNA MER1_type 7 112 -77 2064 90 66 17 chr9 21534161 21534449 -120736995 - AluSp SINE Alu -11 302 1 896 254 87 52 chr9 21534483 21534633 -120736811 - MER34 LTR ERV1 -5 537 394 23479 29 10 0 chr9 21534633 21538245 -120733199 + L1PA4 LINE L1 2540 6155 0 896 254 87 52 chr9 21538245 21538610 -120732834 - MER34 LTR ERV1 -148 394 4 427 311 8 16 chr9 21538734 21538856 -120732588 - L2 LINE L2 -4 3309 3189 347 311 192 42 chr9 21538925 21539378 -120732066 + L2 LINE L2 2379 2899 -415 207 69 0 0 chr9 21539642 21539671 -120731773 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4934 31 0 0 chr9 21539674 21540251 -120731193 - L1PA3 LINE L1 -3 6152 5576 23 33 0 0 chr9 21540755 21540785 -120730659 + AT_rich Low_complexity Low_complexity 1 30 0 298 194 28 28 chr9 21540958 21541030 -120730414 - MIR3 SINE MIR -17 191 120 643 316 62 21 chr9 21541353 21541689 -120729755 - L3 LINE CR1 -853 724 375 186 327 193 0 chr9 21541727 21541950 -120729494 + L2 LINE L2 1978 2243 -1071 243 394 10 0 chr9 21542450 21542549 -120728895 - L2 LINE L2 -25 3247 3148 318 336 71 77 chr9 21542660 21543193 -120728251 + L2 LINE L2 2324 2853 -461 215 337 90 0 chr9 21543256 21543345 -120728099 + L2 LINE L2 2940 3036 -236 241 310 103 7 chr9 21543467 21543612 -120727832 - MIR SINE MIR -66 196 38 27 49 0 0 chr9 21543666 21543707 -120727737 + AT_rich Low_complexity Low_complexity 1 41 0 3952 180 55 19 chr9 21543733 21545118 -120726326 - L1MB7 LINE L1 -51 6133 4695 745 278 68 24 chr9 21545255 21545669 -120725775 - L1ME4a LINE L1 -116 6005 5574 198 0 0 0 chr9 21545736 21545758 -120725686 + (T)n Simple_repeat Simple_repeat 1 22 0 327 251 86 17 chr9 21546115 21546290 -120725154 - L1MB7 LINE L1 -1459 4687 4501 781 335 52 57 chr9 21546477 21546895 -120724549 - L1MB7 LINE L1 -1867 4279 3865 279 0 0 0 chr9 21546895 21546926 -120724518 + (TG)n Simple_repeat Simple_repeat 2 32 0 781 335 52 57 chr9 21546926 21547205 -120724239 - L1MB7 LINE L1 -2281 3865 3586 2356 116 27 16 chr9 21548343 21548714 -120722730 - THE1C LTR MaLR 0 375 1 832 205 164 8 chr9 21549162 21549425 -120722019 - LTR16C LTR ERVL 0 491 188 850 231 77 5 chr9 21549604 21549812 -120721632 + MIR SINE MIR 13 235 -27 2299 64 24 13 chr9 21550000 21550298 -120721146 + AluY SINE Alu 1 301 -10 595 253 5 74 chr9 21551510 21551712 -120719732 - MIR SINE MIR -5 257 70 339 254 29 80 chr9 21551803 21551941 -120719503 - MIR SINE MIR -59 149 19 387 0 0 0 chr9 21552376 21552419 -120719025 + (CA)n Simple_repeat Simple_repeat 1 43 0 198 103 0 0 chr9 21554950 21554979 -120716465 + (ATG)n Simple_repeat Simple_repeat 1 29 0 628 237 48 79 chr9 21555001 21555229 -120716215 - MIR SINE MIR -24 238 18 207 254 0 0 chr9 21555390 21555445 -120715999 + GA-rich Low_complexity Low_complexity 2 56 0 277 241 11 46 chr9 21555609 21555696 -120715748 - MIR SINE MIR -30 232 149 850 232 110 4 chr9 21555706 21555960 -120715484 + MER5C DNA MER1_type 1 281 -43 202 213 59 132 chr9 21555990 21556126 -120715318 - MIR SINE MIR -80 128 3 814 159 0 8 chr9 21556249 21556381 -120715063 + FLAM_A SINE Alu 1 131 -2 416 283 125 11 chr9 21556672 21556856 -120714588 + MIR SINE MIR 1 205 -57 617 231 62 82 chr9 21558077 21558333 -120713111 - MLT1L LTR MaLR -220 395 145 340 285 235 24 chr9 21558625 21558814 -120712630 + MIR SINE MIR 19 244 -18 401 192 14 0 chr9 21558995 21559068 -120712376 - MER2 DNA MER2_type -5 340 267 183 42 0 0 chr9 21559093 21559117 -120712327 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1096 164 63 34 chr9 21559167 21559374 -120712070 - AluJo SINE Alu -97 215 3 997 208 5 14 chr9 21559385 21559437 -120712007 - MER2 DNA MER2_type -135 210 159 1918 152 124 26 chr9 21559437 21559825 -120711619 + MSTA LTR MaLR 1 426 -2 997 208 5 14 chr9 21559825 21559984 -120711460 - MER2 DNA MER2_type -186 159 1 321 26 0 0 chr9 21560306 21560344 -120711100 + (TG)n Simple_repeat Simple_repeat 1 38 0 268 288 32 0 chr9 21560354 21560479 -120710965 + L1MC4 LINE L1 7914 8042 0 503 261 170 0 chr9 21562387 21562540 -120708904 - MER5A DNA MER1_type -1 188 10 431 278 146 0 chr9 21562961 21563105 -120708339 + MIR SINE MIR 10 174 -88 246 276 40 0 chr9 21563286 21563362 -120708082 - L2 LINE L2 -225 3047 2969 454 200 48 9 chr9 21563410 21563515 -120707929 - MER5A DNA MER1_type -77 112 4 191 312 71 57 chr9 21563515 21563646 -120707798 - L2 LINE L2 -299 2973 2841 375 211 77 29 chr9 21564440 21564544 -120706900 - L2 LINE L2 0 3313 3205 252 305 62 80 chr9 21565293 21565764 -120705680 - L2 LINE L2 -213 3059 2619 3201 192 38 66 chr9 21565768 21566554 -120704890 + L1 LINE L1 3531 4282 -1864 2270 101 0 3 chr9 21566554 21566851 -120704593 + AluSc SINE Alu 1 296 -13 3201 192 38 66 chr9 21566851 21567106 -120704338 + L1 LINE L1 4282 4543 -1603 519 165 0 0 chr9 21567106 21567184 -120704260 + Tigger5 DNA MER2_type 1 78 -2245 471 183 97 0 chr9 21567184 21567277 -120704167 - Tigger5 DNA MER2_type -3 2320 2219 * 479 219 0 0 chr9 21567253 21567335 -120704109 + Tigger5 DNA MER2_type 2242 2323 0 1850 206 40 30 chr9 21567335 21567616 -120703828 + L1ME LINE L1 4542 4830 -1316 2012 159 0 0 chr9 21567616 21567912 -120703532 + AluSx SINE Alu 1 296 -16 1850 206 40 30 chr9 21567912 21568058 -120703386 + L1ME LINE L1 4830 4973 -1173 461 126 95 11 chr9 21568074 21568169 -120703275 + L1MC2 LINE L1 6242 6344 0 314 51 0 0 chr9 21568177 21568216 -120703228 + AluSc SINE Alu 93 131 -168 946 202 21 55 chr9 21568220 21568458 -120702986 + L1ME LINE L1 5437 5666 -500 414 165 83 151 chr9 21568603 21568821 -120702623 + ORSL DNA AcHobo 69 271 -4 440 229 32 10 chr9 21569197 21569380 -120702064 - MLT1G1 LTR MaLR -411 179 3 1921 122 39 0 chr9 21569421 21569700 -120701744 - AluSq SINE Alu -1 312 23 183 129 0 0 chr9 21572258 21572289 -120699155 + (A)n Simple_repeat Simple_repeat 1 31 0 312 239 314 6 chr9 21572987 21573146 -120698298 + MIR SINE MIR 33 240 -22 189 0 0 0 chr9 21573546 21573567 -120697877 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 400 289 8 16 chr9 21574079 21574200 -120697244 + MIR SINE MIR 16 135 -127 310 333 26 0 chr9 21574324 21574438 -120697006 - MIR SINE MIR -40 222 106 207 293 43 115 chr9 21574449 21574657 -120696787 + L2 LINE L2 2688 2880 -434 6781 134 94 4 chr9 21575084 21576214 -120695230 + Tigger3b DNA MER2_type 1 1231 0 350 328 23 15 chr9 21576435 21576566 -120694878 - MIR3 SINE MIR -52 156 25 303 267 9 9 chr9 21577452 21577557 -120693887 - HAL1 LINE L1 -158 2349 2245 1708 158 4 0 chr9 21577746 21578011 -120693433 + AluJb SINE Alu 20 285 -27 263 232 16 200 chr9 21578969 21579159 -120692285 - MER5A DNA MER1_type 0 189 35 271 0 51 0 chr9 21579234 21579273 -120692171 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 3141 163 24 16 chr9 21580161 21580738 -120690706 - L1MB7 LINE L1 -19 6165 5584 326 23 0 23 chr9 21580790 21580834 -120690610 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 241 341 188 5 chr9 21581076 21581284 -120690160 + MER115 DNA AcHobo 72 317 -376 355 235 0 0 chr9 21581290 21581358 -120690086 + MER115 DNA AcHobo 467 534 -159 273 299 0 0 chr9 21581463 21581530 -120689914 + MER115 DNA AcHobo 626 692 -1 295 282 88 30 chr9 21581607 21581757 -120689687 + MIR3 SINE MIR 2 157 -105 207 140 53 18 chr9 21582341 21582398 -120689046 + A-rich Low_complexity Low_complexity 2 60 0 534 241 18 0 chr9 21582542 21582654 -120688790 + MER81 DNA DNA 1 114 0 762 305 27 19 chr9 21582826 21583085 -120688359 - MIR SINE MIR 0 262 2 32 26 0 0 chr9 21583646 21583685 -120687759 + AT_rich Low_complexity Low_complexity 1 39 0 2095 80 30 0 chr9 21583805 21584105 -120687339 + L1MA3 LINE L1 5997 6305 0 374 313 92 24 chr9 21584270 21584473 -120686971 + MIR SINE MIR 48 262 0 565 256 19 0 chr9 21584732 21584888 -120686556 + MER117 DNA MER1_type 2 160 -37 271 284 0 11 chr9 21584969 21585064 -120686380 + (TA)n Simple_repeat Simple_repeat 1 94 0 2270 128 0 0 chr9 21585366 21585678 -120685766 - AluSx SINE Alu 0 312 1 1560 257 24 19 chr9 21586331 21586747 -120684697 + L1MA7 LINE L1 499 916 -5863 891 147 7 0 chr9 21586752 21586888 -120684556 + AluSg/x SINE Alu 168 304 -8 362 292 12 67 chr9 21586895 21587108 -120684336 + L1MA7 LINE L1 912 1142 -4706 2021 265 34 55 chr9 21587421 21588096 -120683348 + L1MA7 LINE L1 1330 1990 -4789 * 6941 42 0 0 chr9 21588092 21588906 -120682538 - L1PA5 LINE L1 0 6154 5341 1209 225 28 11 chr9 21588905 21589293 -120682151 + L1MA7 LINE L1 1948 2350 -4499 * 7416 183 26 33 chr9 21589291 21589629 -120681815 + L1MA7 LINE L1 4460 4799 -2194 2360 119 76 15 chr9 21589629 21589972 -120681472 - THE1B LTR MaLR 0 364 1 7416 183 26 33 chr9 21589972 21591409 -120680035 + L1MA7 LINE L1 4799 6245 -748 1787 170 3 23 chr9 21591409 21591709 -120679735 + AluJb SINE Alu 1 294 -18 7416 183 26 33 chr9 21591709 21591978 -120679466 + L1MA7 LINE L1 6245 6514 -479 207 0 0 0 chr9 21591978 21592001 -120679443 + (TA)n Simple_repeat Simple_repeat 2 24 0 7416 183 26 33 chr9 21592001 21592508 -120678936 + L1MA7 LINE L1 6514 6987 -6 1141 256 183 13 chr9 21592659 21593124 -120678320 - MLT2F LTR ERVL -119 544 1 189 74 0 0 chr9 21594209 21594236 -120677208 + (CA)n Simple_repeat Simple_repeat 2 28 0 2177 128 0 7 chr9 21594499 21594805 -120676639 - AluSx SINE Alu -8 304 1 1715 226 88 68 chr9 21594946 21595436 -120676008 - MLT2B3 LTR ERVL 0 554 50 2341 82 0 3 chr9 21595436 21595729 -120675715 - AluY SINE Alu -19 292 1 1715 226 88 68 chr9 21595729 21595781 -120675663 - MLT2B3 LTR ERVL -504 50 1 211 172 0 47 chr9 21595974 21596038 -120675406 + CT-rich Low_complexity Low_complexity 4 64 0 303 269 173 10 chr9 21596151 21596255 -120675189 - MIR SINE MIR -18 244 124 1398 201 11 4 chr9 21596276 21596544 -120674900 + AluJb SINE Alu 11 280 -32 1237 44 8 12 chr9 21596544 21596791 -120674653 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 1679 229 41 15 chr9 21596892 21597351 -120674093 + L1ME1 LINE L1 5693 6163 -3 4629 172 28 27 chr9 21597371 21598552 -120672892 + L1MB5 LINE L1 4980 6167 -7 28 61 0 0 chr9 21600685 21600734 -120670710 + AT_rich Low_complexity Low_complexity 1 49 0 358 236 170 55 chr9 21600848 21601013 -120670431 + MIR SINE MIR 65 248 -14 193 400 45 0 chr9 21601498 21601653 -120669791 - L2 LINE L2 -357 2957 2796 540 317 11 6 chr9 21601662 21601842 -120669602 - MIR SINE MIR 0 262 82 482 184 0 23 chr9 21601849 21601931 -120669513 + Tigger7 DNA MER2_type 2 82 -619 2237 107 0 3 chr9 21601931 21602241 -120669203 + AluSc SINE Alu 1 309 0 390 91 0 0 chr9 21602396 21602451 -120668993 + (CATA)n Simple_repeat Simple_repeat 1 55 0 2136 137 72 23 chr9 21602452 21602933 -120668511 - MLT2A2 LTR ERVL -46 508 1 374 239 0 0 chr9 21602935 21603006 -120668438 + Tigger7 DNA MER2_type 2517 2587 0 184 279 0 0 chr9 21603008 21603051 -120668393 - MIR SINE MIR -219 43 1 481 293 127 19 chr9 21603073 21603380 -120668064 - L2 LINE L2 -536 2778 2439 303 197 28 0 chr9 21603504 21603575 -120667869 + MER103 DNA DNA 46 118 -48 400 274 121 0 chr9 21604423 21604547 -120666897 - MIR SINE MIR -44 218 80 199 177 0 129 chr9 21604928 21604990 -120666454 - L2 LINE L2 -3 3269 3216 389 250 0 11 chr9 21605386 21605499 -120665945 - MIR SINE MIR -78 130 20 23 0 0 0 chr9 21606619 21606642 -120664802 + AT_rich Low_complexity Low_complexity 1 23 0 554 339 87 4 chr9 21606954 21607184 -120664260 - MIR SINE MIR -1 261 13 2239 97 3 16 chr9 21607839 21608147 -120663297 + AluSq SINE Alu 2 305 -8 320 347 18 30 chr9 21608249 21608416 -120663028 - L2 LINE L2 -556 2758 2594 27 0 0 0 chr9 21609410 21609437 -120662007 + AT_rich Low_complexity Low_complexity 1 27 0 404 303 22 7 chr9 21609448 21609635 -120661809 - MIR SINE MIR -16 246 20 337 280 90 0 chr9 21610451 21610551 -120660893 + MIR SINE MIR 118 226 -36 181 266 89 89 chr9 21611381 21611539 -120659905 + MIR SINE MIR 16 173 -89 373 190 323 38 chr9 21611605 21611763 -120659681 - MIR SINE MIR -28 234 32 454 261 112 15 chr9 21613890 21614024 -120657420 - MIR SINE MIR -102 160 14 684 265 93 0 chr9 21614276 21614438 -120657006 + MER45A DNA AcHobo 2 178 0 296 315 95 16 chr9 21614806 21615003 -120656441 + L1ME4a LINE L1 5594 5825 -296 1236 193 52 0 chr9 21615003 21615215 -120656229 - MER58A DNA MER1_type 0 224 2 296 315 95 16 chr9 21615215 21615322 -120656122 + L1ME4a LINE L1 5825 5922 -199 2338 29 43 0 chr9 21616841 21617118 -120654326 - AluY SINE Alu -22 289 1 2402 93 0 3 chr9 21617842 21618185 -120653259 - AluY SINE Alu 0 342 1 852 79 14 14 chr9 21618206 21618346 -120653098 + (TTCC)n Simple_repeat Simple_repeat 1 140 0 351 231 238 7 chr9 21619963 21620110 -120651334 + MIR SINE MIR 58 238 -24 228 283 0 0 chr9 21620354 21620400 -120651044 + C-rich Low_complexity Low_complexity 4 49 0 614 120 0 51 chr9 21621239 21621356 -120650088 - L1PA16 LINE L1 0 6166 6056 1079 130 22 0 chr9 21621518 21621703 -120649741 - L1PA16 LINE L1 -105 6061 5873 267 288 63 36 chr9 21621760 21621871 -120649573 + L2 LINE L2 3199 3312 -1 26 0 0 0 chr9 21622476 21622502 -120648942 + AT_rich Low_complexity Low_complexity 1 26 0 551 254 0 0 chr9 21623255 21623369 -120648075 + MIR SINE MIR 47 160 -102 240 35 0 0 chr9 21624074 21624103 -120647341 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 315 0 0 0 chr9 21624102 21624137 -120647307 + (CA)n Simple_repeat Simple_repeat 1 35 0 320 364 52 7 chr9 21625137 21625291 -120646153 - MIR3 SINE MIR -3 205 45 233 352 50 19 chr9 21625540 21625699 -120645745 + MIR SINE MIR 57 220 -42 3481 137 7 7 chr9 21625893 21626478 -120644966 + MER7C DNA MER2_type 2 586 -16 215 79 26 0 chr9 21626757 21626795 -120644649 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 246 296 28 9 chr9 21627442 21627550 -120643894 + L1ME LINE L1 5744 5853 -268 4586 31 1 0 chr9 21628920 21629824 -120641620 - L1P1 LINE L1 -434 5721 4817 * 6802 26 7 0 chr9 21629823 21630670 -120640774 + L1P1 LINE L1 3967 4819 -1327 199 308 0 0 chr9 21630700 21630752 -120640692 + L2 LINE L2 3219 3270 -2 1521 209 173 30 chr9 21630819 21631293 -120640151 - MLT1F1 LTR MaLR 0 567 1 539 28 0 0 chr9 21631625 21631696 -120639748 - L1PA4 LINE L1 0 6155 6085 408 96 78 0 chr9 21631700 21631815 -120639629 + CT-rich Low_complexity Low_complexity 1 124 0 267 54 0 0 chr9 21631810 21631847 -120639597 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 888 201 29 34 chr9 21631963 21632167 -120639277 - MIR SINE MIR -4 258 56 375 260 58 0 chr9 21632249 21632353 -120639091 - MIR SINE MIR -71 191 82 321 219 48 19 chr9 21632429 21632534 -120638910 - MER112 DNA MER1_type -5 255 148 396 213 37 19 chr9 21632550 21632658 -120638786 - MER112 DNA MER1_type -83 177 68 207 69 0 0 chr9 21632662 21632691 -120638753 + (TG)n Simple_repeat Simple_repeat 2 30 0 366 309 83 28 chr9 21632932 21633113 -120638331 + MIR SINE MIR 72 262 0 284 315 0 0 chr9 21633262 21633335 -120638109 - L2 LINE L2 -1 3271 3199 401 290 68 31 chr9 21634161 21634323 -120637121 - MIR SINE MIR -73 189 22 1849 158 33 22 chr9 21635797 21636052 -120635392 - MLT1A1 LTR MaLR 0 365 103 2399 103 36 20 chr9 21636052 21636410 -120635034 + THE1B LTR MaLR 1 364 0 1849 158 33 22 chr9 21636410 21636515 -120634929 - MLT1A1 LTR MaLR -262 103 1 530 266 0 28 chr9 21637625 21637802 -120633642 - MER104 DNA Tc2 -3 177 6 1827 224 103 8 chr9 21638816 21639348 -120632096 + MER119 DNA MER1_type 1 583 0 4411 221 104 50 chr9 21639614 21641588 -120629856 + L1M4 LINE L1 3148 5227 -919 333 0 0 0 chr9 21641603 21641640 -120629804 + (CA)n Simple_repeat Simple_repeat 2 38 0 539 248 16 16 chr9 21642151 21642280 -120629164 + L2 LINE L2 3185 3313 0 915 219 15 5 chr9 21642610 21642806 -120628638 - MIR SINE MIR -56 206 9 321 189 189 0 chr9 21642873 21642947 -120628497 - MER5A DNA MER1_type -88 101 14 805 246 113 57 chr9 21642975 21643382 -120628062 - MLT1J LTR MaLR -81 430 1 1995 101 0 0 chr9 21643573 21643830 -120627614 + AluSq SINE Alu 1 257 -56 3980 36 0 0 chr9 21643930 21644422 -120627022 + L1PA3 LINE L1 5668 6159 0 787 238 55 8 chr9 21644620 21644948 -120626496 + MLT2F LTR ERVL 1 390 -273 496 176 48 64 chr9 21644992 21645117 -120626327 + MLT2F LTR ERVL 479 601 -62 197 321 49 12 chr9 21645750 21645831 -120625613 + MIR SINE MIR 27 110 -98 622 206 59 0 chr9 21648060 21648196 -120623248 + MIR SINE MIR 83 226 -36 256 254 0 0 chr9 21648342 21648405 -120623039 + (TATG)n Simple_repeat Simple_repeat 4 66 0 6897 65 1 1 chr9 21648561 21649730 -120621714 + L1PA7 LINE L1 4981 6151 -3 272 224 35 24 chr9 21650021 21650106 -120621338 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 22 35 0 0 chr9 21650159 21650188 -120621256 + AT_rich Low_complexity Low_complexity 1 29 0 252 200 0 0 chr9 21650348 21650408 -120621036 + (TA)n Simple_repeat Simple_repeat 1 60 0 598 330 34 13 chr9 21651275 21651511 -120619933 - MIR SINE MIR 0 262 22 779 198 82 33 chr9 21653989 21654232 -120617212 + MER112 DNA MER1_type 1 255 -1 226 273 263 0 chr9 21654233 21654332 -120617112 + L2 LINE L2 3189 3313 0 349 349 78 0 chr9 21654979 21655145 -120616299 + MIR SINE MIR 3 181 -81 230 256 16 116 chr9 21655146 21655267 -120616177 - MER102b DNA MER1_type 0 341 233 322 263 0 0 chr9 21655340 21655420 -120616024 + MIR SINE MIR 183 262 0 2105 140 20 12 chr9 21655554 21655953 -120615491 + L1 LINE L1 4873 5274 -872 1712 194 28 30 chr9 21706124 21706485 -120564959 - MLT1A1 LTR MaLR -3 362 3 339 293 55 37 chr9 21706487 21706596 -120564848 - MIR SINE MIR -64 198 87 426 353 53 5 chr9 21706596 21706803 -120564641 + MIR SINE MIR 4 220 -42 237 272 302 13 chr9 21708068 21708224 -120563220 + MIR SINE MIR 17 214 -48 192 286 0 0 chr9 21708297 21708346 -120563098 - L2 LINE L2 -98 3215 3167 493 252 44 15 chr9 21708358 21708493 -120562951 - MIR SINE MIR -73 189 51 2949 212 30 25 chr9 21708651 21709284 -120562160 - L1M1 LINE L1 -6913 652 17 286 289 71 15 chr9 21709301 21709498 -120561946 - L1MC/D LINE L1 -2331 5477 5270 183 147 0 0 chr9 21710672 21710706 -120560738 + MIR SINE MIR 107 140 -122 4105 183 51 19 chr9 21711744 21713041 -120558403 + L1MB5 LINE L1 4809 6157 -17 333 0 0 0 chr9 21713044 21713081 -120558363 + (CA)n Simple_repeat Simple_repeat 2 38 0 829 280 119 47 chr9 21713273 21713965 -120557479 - L2 LINE L2 -5 3308 2554 28 0 0 0 chr9 21716023 21716051 -120555393 + AT_rich Low_complexity Low_complexity 1 28 0 424 239 98 31 chr9 21716062 21716329 -120555115 + MLT2C1 LTR ERVL 1 342 -55 236 192 0 19 chr9 21716367 21716419 -120555025 + MLT2F LTR ERVL 613 663 0 195 280 59 110 chr9 21718005 21718123 -120553321 - L3 LINE CR1 -1360 217 106 270 325 114 8 chr9 21718150 21718273 -120553171 - L2 LINE L2 -4 3268 3133 263 206 0 73 chr9 21718380 21718516 -120552928 + T-rich Low_complexity Low_complexity 4 129 0 384 286 94 49 chr9 21718531 21718734 -120552710 + MIR SINE MIR 37 248 -14 23 0 0 0 chr9 21718840 21718863 -120552581 + AT_rich Low_complexity Low_complexity 1 23 0 488 344 82 29 chr9 21719062 21719341 -120552103 - L2 LINE L2 0 3272 2979 213 175 123 18 chr9 21720488 21720545 -120550899 + MIR3 SINE MIR 13 75 -133 858 264 43 9 chr9 21722333 21722564 -120548880 + MIR SINE MIR 12 250 -12 285 197 98 0 chr9 21722688 21722749 -120548695 - L2 LINE L2 0 3272 3206 222 238 25 75 chr9 21724126 21724206 -120547238 + MIR SINE MIR 26 101 -161 1722 174 4 0 chr9 21724874 21725149 -120546295 + AluSx SINE Alu 1 276 -36 27 0 0 0 chr9 21725154 21725181 -120546263 + AT_rich Low_complexity Low_complexity 1 27 0 386 243 18 18 chr9 21725182 21725293 -120546151 - MER103 DNA DNA 0 166 56 26 30 0 0 chr9 21725515 21725548 -120545896 + AT_rich Low_complexity Low_complexity 1 33 0 2190 125 3 0 chr9 21725657 21725968 -120545476 - AluSx SINE Alu 0 312 1 212 356 0 14 chr9 21726113 21726186 -120545258 - MIR SINE MIR -166 96 25 27 0 0 0 chr9 21729081 21729108 -120542336 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr9 21729203 21729232 -120542212 + AT_rich Low_complexity Low_complexity 1 29 0 185 231 0 15 chr9 21729389 21729454 -120541990 + (TA)n Simple_repeat Simple_repeat 2 65 0 26 50 0 0 chr9 21729481 21729521 -120541923 + AT_rich Low_complexity Low_complexity 1 40 0 277 313 37 29 chr9 21729530 21729773 -120541671 - L1MC/D LINE L1 -1935 5873 5629 328 298 0 57 chr9 21731447 21731571 -120539873 + MIR SINE MIR 96 212 -50 1426 228 33 12 chr9 21733077 21733411 -120538033 - MER58B DNA MER1_type 0 341 1 544 258 86 11 chr9 21733521 21733707 -120537737 + MLT1I LTR MaLR 2 201 -208 414 257 35 0 chr9 21733742 21733855 -120537589 + MLT1I LTR MaLR 288 404 -5 567 287 57 24 chr9 21734082 21734413 -120537031 + L1ME4a LINE L1 5515 5856 -265 296 155 0 0 chr9 21734530 21734588 -120536856 + L1ME4a LINE L1 6061 6118 -3 459 275 99 28 chr9 21734955 21735327 -120536117 - MLT1J2 LTR MaLR -14 436 4 252 286 71 0 chr9 21736655 21736795 -120534649 - L1ME4a LINE L1 -15 6106 5957 362 338 41 14 chr9 21737011 21737156 -120534288 + MIR SINE MIR 20 168 -94 290 272 103 0 chr9 21737359 21737495 -120533949 + L1ME4a LINE L1 5957 6106 -15 358 221 172 37 chr9 21738348 21738511 -120532933 - MLT1L LTR MaLR -93 522 338 246 62 0 0 chr9 21738741 21738773 -120532671 + (A)n Simple_repeat Simple_repeat 1 32 0 330 350 96 41 chr9 21739530 21739844 -120531600 + L3b LINE CR1 1217 1547 -36 465 362 33 76 chr9 21740534 21740585 -120530859 + L2 LINE L2 2943 2995 -277 1332 188 51 34 chr9 21740585 21740756 -120530688 - AluJb SINE Alu -15 297 117 271 42 62 0 chr9 21740756 21740804 -120530640 + T-rich Low_complexity Low_complexity 2 52 0 1332 188 51 34 chr9 21740804 21740924 -120530520 - AluJb SINE Alu -195 117 1 465 362 33 76 chr9 21740924 21741201 -120530243 + L2 LINE L2 2995 3257 -15 2724 88 0 8 chr9 21742825 21743210 -120528234 + L1PA7 LINE L1 5764 6145 -9 27958 50 1 2 chr9 21743278 21746925 -120524519 + L1PA3 LINE L1 9 3652 -2494 13900 33 1 0 chr9 21747068 21749528 -120521916 + L1PA3 LINE L1 3687 6152 -3 1679 182 35 18 chr9 21749569 21749909 -120521535 + MER7A DNA MER2_type 2 345 -1 2884 191 37 6 chr9 21749951 21750496 -120520948 + MER68 LTR ERV1 1 562 0 238 247 82 0 chr9 21750735 21750808 -120520636 - MIR3 SINE MIR -21 187 109 23 0 0 0 chr9 21751359 21751382 -120520062 + AT_rich Low_complexity Low_complexity 1 23 0 600 138 33 53 chr9 21751504 21751656 -120519788 + MER104 DNA Tc2 1 149 -31 1261 262 77 24 chr9 21751725 21752218 -120519226 + LTR33 LTR ERVL 3 521 0 553 250 171 0 chr9 21752244 21752384 -120519060 + MER5A DNA MER1_type 26 189 0 696 268 111 4 chr9 21753892 21754127 -120517317 + MIR SINE MIR 2 261 -1 1929 284 30 11 chr9 21754475 21755141 -120516303 + L1MEc LINE L1 36 714 -5682 180 77 0 0 chr9 21755296 21755322 -120516122 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 3083 172 106 22 chr9 21755496 21756222 -120515222 - LTR48 LTR ERV1 0 787 1 478 316 57 11 chr9 21757791 21757968 -120513476 + MLT1J LTR MaLR 84 268 -243 427 304 130 0 chr9 21758259 21758397 -120513047 - MIR SINE MIR -87 175 20 675 272 31 51 chr9 21758419 21758673 -120512771 - MIR SINE MIR 0 262 14 22 0 0 0 chr9 21759211 21759233 -120512211 + AT_rich Low_complexity Low_complexity 1 22 0 305 215 13 0 chr9 21759373 21759452 -120511992 + L1M4 LINE L1 3649 3728 -2418 1894 239 37 50 chr9 21759476 21760021 -120511423 + MLT1E LTR MaLR 36 573 -20 1049 327 69 45 chr9 21760047 21760552 -120510892 + L1M4 LINE L1 3733 4249 -1897 918 231 82 23 chr9 21760552 21760808 -120510636 - MLT1D LTR MaLR 0 505 235 1476 236 111 39 chr9 21760820 21760960 -120510484 - L1M4 LINE L1 -916 5230 5102 2796 125 29 9 chr9 21760960 21761407 -120510037 + L1PA15 LINE L1 5710 6165 0 1476 236 111 39 chr9 21761407 21762065 -120509379 - L1M4 LINE L1 -1044 5102 4374 322 286 0 12 chr9 21762349 21762433 -120509011 + MER5B DNA MER1_type 1 83 -95 784 257 11 0 chr9 21762771 21762946 -120508498 - MER45A DNA AcHobo 0 178 2 2244 113 6 3 chr9 21763092 21763403 -120508041 + AluSx SINE Alu 1 312 0 24 0 0 0 chr9 21763654 21763678 -120507766 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 21765933 21765954 -120505490 + AT_rich Low_complexity Low_complexity 1 21 0 1345 215 27 52 chr9 21765965 21766333 -120505111 + MLT1A1 LTR MaLR 7 365 0 364 277 41 69 chr9 21766500 21766919 -120504525 + HAL1b LINE L1 211 617 -731 730 172 44 59 chr9 21766920 21767124 -120504320 - MER106A DNA MER1_type 0 236 36 7576 159 15 23 chr9 21767435 21769105 -120502339 - L1PA12 LINE L1 -4227 3357 1694 198 128 0 0 chr9 21769244 21769283 -120502161 + (CTGTG)n Simple_repeat Simple_repeat 2 40 0 555 196 14 20 chr9 21771263 21771411 -120500033 - L1MB3 LINE L1 -1 6182 6036 13663 209 16 12 chr9 21771412 21776054 -120495390 - L1PB1 LINE L1 -4 6863 2145 1176 222 146 38 chr9 21776088 21776566 -120494878 + LTR10B LTR ERV1 15 544 -3 3626 159 29 17 chr9 21776579 21777340 -120494104 - L1PB1 LINE L1 -4635 2227 1387 814 229 5 0 chr9 21777340 21777528 -120493916 - L1PB1 LINE L1 -6669 194 6 3649 180 45 7 chr9 21777547 21778468 -120492976 - L1MB4 LINE L1 -119 6061 5095 428 214 8 16 chr9 21778484 21778610 -120492834 - L1MC4 LINE L1 0 8042 7918 331 263 15 45 chr9 21778765 21778898 -120492546 - LTR52 LTR ERVL -260 161 33 837 212 18 12 chr9 21778898 21779063 -120492381 + AluJo SINE Alu 117 282 -30 1732 246 50 12 chr9 21779115 21779681 -120491763 - L1MC4a LINE L1 -991 6817 6231 1123 198 118 4 chr9 21779687 21779924 -120491520 + AluJo SINE Alu 2 265 -47 2188 277 67 54 chr9 21779931 21781653 -120489791 - L1MC4a LINE L1 -743 5403 3705 16097 39 1 1 chr9 21781653 21784399 -120487045 - L1PA3 LINE L1 0 6155 3410 2188 277 67 54 chr9 21784399 21784548 -120486896 - L1MC4a LINE L1 -2441 3705 3559 422 209 22 108 chr9 21784548 21784687 -120486757 - FLAM_A SINE Alu -2 131 5 2188 277 67 54 chr9 21784687 21784995 -120486449 - L1MC4a LINE L1 -2587 3559 3998 280 43 21 21 chr9 21784995 21785042 -120486402 + (TG)n Simple_repeat Simple_repeat 2 48 0 2188 277 67 54 chr9 21785042 21785946 -120485498 - L1MC4a LINE L1 -2147 3999 3108 21 0 0 0 chr9 21785966 21785987 -120485457 + AT_rich Low_complexity Low_complexity 1 21 0 235 48 24 24 chr9 21786004 21786046 -120485398 + (CA)n Simple_repeat Simple_repeat 1 42 0 253 336 68 4 chr9 21786091 21786341 -120485103 + L1M4 LINE L1 4058 4323 -1823 808 206 19 37 chr9 21786495 21786709 -120484735 - L1MA9 LINE L1 -71 6241 6032 358 245 66 0 chr9 21786706 21786812 -120484632 + L1MA9 LINE L1 5939 6051 -261 * 2219 113 3 3 chr9 21786911 21787221 -120484223 - AluSp SINE Alu -3 310 1 234 256 152 16 chr9 21787389 21787514 -120483930 - HAL1b LINE L1 -846 502 361 182 83 0 0 chr9 21787520 21787544 -120483900 + MER5A DNA MER1_type 1 24 -165 1336 135 65 4 chr9 21787545 21787805 -120483639 + L1MA2 LINE L1 6025 6300 -4 38 0 0 0 chr9 21787807 21787845 -120483599 + AT_rich Low_complexity Low_complexity 1 38 0 581 195 152 6 chr9 21787849 21788013 -120483431 + Charlie1a DNA MER1_type 37 224 -1231 * 1634 226 19 2 chr9 21787998 21788409 -120483035 + Charlie1a DNA MER1_type 330 747 -708 1894 184 110 7 chr9 21788573 21789153 -120482291 + Charlie1a DNA MER1_type 754 1393 -62 1136 218 44 75 chr9 21789157 21789554 -120481890 + MLT2D LTR ERVL 1 409 -111 2100 125 44 39 chr9 21789554 21789915 -120481529 - THE1B LTR MaLR 0 364 2 426 85 0 0 chr9 21789919 21789978 -120481466 + (TCCG)n Simple_repeat Simple_repeat 2 60 0 1136 218 44 75 chr9 21789978 21790005 -120481439 + MLT2D LTR ERVL 412 512 -8 269 226 16 0 chr9 21790009 21790071 -120481373 + Charlie1a DNA MER1_type 1393 1455 0 371 265 157 27 chr9 21790159 21790344 -120481100 - HAL1b LINE L1 -1088 260 52 2676 39 3 0 chr9 21791580 21791890 -120479554 - AluY SINE Alu 0 311 1 7005 235 15 14 chr9 21793038 21794682 -120476762 - L1PA12 LINE L1 -5936 1645 1 401 171 14 0 chr9 21795099 21795169 -120476275 + L2 LINE L2 3243 3313 0 1924 152 3 13 chr9 21797068 21797371 -120474073 + AluJo SINE Alu 1 300 -12 318 110 0 55 chr9 21797868 21797941 -120473503 + (GGAA)n Simple_repeat Simple_repeat 2 70 0 437 190 141 63 chr9 21797946 21798088 -120473356 + MER63A DNA MER1_type 57 209 -1 8118 39 0 0 chr9 21800751 21802504 -120468940 - L1PA4 LINE L1 -8 6147 4397 1589 25 0 0 chr9 21802504 21802702 -120468742 + L1PA4 LINE L1 4201 4398 -1748 274 282 24 40 chr9 21802704 21802828 -120468616 + L1MC4a LINE L1 5627 5748 -2060 302 339 109 5 chr9 21802845 21803037 -120468407 + L1MC4a LINE L1 5826 6037 -1771 846 217 86 64 chr9 21803067 21803441 -120468003 - MLT1B LTR MaLR -8 382 1 1441 217 56 38 chr9 21804953 21805450 -120465994 - L1MA9 LINE L1 -25 6287 5782 452 87 0 43 chr9 21805455 21805547 -120465897 + (TA)n Simple_repeat Simple_repeat 2 89 0 370 150 0 0 chr9 21805568 21805628 -120465816 + L1M3 LINE L1 5685 5744 -590 672 215 96 38 chr9 21805714 21805975 -120465469 - MLT1C LTR MaLR 0 467 192 274 296 136 41 chr9 21805993 21806162 -120465282 + MIR3 SINE MIR 10 194 -14 2278 137 3 0 chr9 21806216 21806558 -120464886 - MER2 DNA MER2_type -1 343 1 673 284 65 35 chr9 21806932 21807161 -120464283 + MIR SINE MIR 8 243 -19 348 275 162 7 chr9 21807336 21807478 -120463966 - MIR3 SINE MIR -4 204 41 579 126 0 0 chr9 21807752 21807847 -120463597 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 322 271 90 15 chr9 21808424 21808557 -120462887 - MIR SINE MIR -115 147 5 552 306 57 26 chr9 21810392 21810657 -120460787 - L3 LINE CR1 -887 690 418 205 242 137 112 chr9 21810744 21810905 -120460539 + MIR SINE MIR 97 261 -1 250 356 185 33 chr9 21810979 21811249 -120460195 - L3 LINE CR1 -1235 342 32 320 319 58 26 chr9 21811702 21811893 -120459551 + MIR SINE MIR 11 207 -55 6848 58 12 9 chr9 21811945 21813366 -120458078 + L1PA6 LINE L1 4728 6152 -2 350 227 21 0 chr9 21814020 21814117 -120457327 - MER103 DNA DNA -65 101 3 198 354 0 0 chr9 21814413 21814478 -120456966 + MER5A DNA MER1_type 1 65 -124 5430 124 37 31 chr9 21814489 21814840 -120456604 + L1MA8 LINE L1 5148 5495 -796 2100 116 3 7 chr9 21814840 21815150 -120456294 + AluSc SINE Alu 1 309 0 5430 124 37 31 chr9 21815150 21815936 -120455508 + L1MA8 LINE L1 5495 6289 -2 2549 68 0 0 chr9 21815956 21816267 -120455177 + AluY SINE Alu 1 311 0 272 220 187 22 chr9 21816275 21816366 -120455078 + MER5A DNA MER1_type 74 179 -10 194 302 32 56 chr9 21816460 21816586 -120454858 - L2 LINE L2 -3 3269 3147 412 356 20 10 chr9 21817178 21817380 -120454064 + MIR SINE MIR 47 250 -12 366 324 50 27 chr9 21818048 21818307 -120453137 + L2 LINE L2 2825 3089 -183 294 160 0 0 chr9 21818405 21818455 -120452989 + MER5A DNA MER1_type 57 106 -83 296 290 93 9 chr9 21818506 21818613 -120452831 + L2 LINE L2 3134 3249 -23 2007 209 63 29 chr9 21819027 21819515 -120451929 + MLT1D LTR MaLR 1 505 0 237 65 0 0 chr9 21819634 21819665 -120451779 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr9 21820954 21820976 -120450468 + AT_rich Low_complexity Low_complexity 1 22 0 539 282 42 35 chr9 21821083 21821277 -120450167 - MIR SINE MIR -60 202 10 26 0 0 0 chr9 21821293 21821319 -120450125 + AT_rich Low_complexity Low_complexity 1 26 0 674 263 77 16 chr9 21821320 21821514 -120449930 + MIR SINE MIR 47 252 -10 231 389 12 0 chr9 21822122 21822289 -120449155 + L1ME LINE L1 5614 5782 -380 452 290 23 22 chr9 21823043 21823203 -120448241 + MER5A DNA MER1_type 24 175 -3 786 247 0 33 chr9 21823204 21823386 -120448058 + MER5B DNA MER1_type 3 178 0 21 0 0 0 chr9 21823512 21823533 -120447911 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr9 21824055 21824092 -120447352 + AT_rich Low_complexity Low_complexity 1 37 0 302 306 127 30 chr9 21824445 21824579 -120446865 + L1MC/D LINE L1 4672 4818 -1328 231 125 0 0 chr9 21825407 21825447 -120445997 + (CA)n Simple_repeat Simple_repeat 2 41 0 537 268 96 4 chr9 21825572 21825822 -120445622 - L1ME3A LINE L1 -215 5955 5683 533 250 62 10 chr9 21825880 21826189 -120445255 - L1ME3A LINE L1 -611 5553 5219 246 214 54 18 chr9 21826488 21826600 -120444844 + L1MC/D LINE L1 5291 5406 -758 22 35 0 0 chr9 21826604 21826633 -120444811 + AT_rich Low_complexity Low_complexity 1 29 0 257 268 94 14 chr9 21826743 21826881 -120444563 + L1MC/D LINE L1 5575 5723 -2085 328 314 45 19 chr9 21827021 21827177 -120444267 + Charlie8 DNA MER1_type 61 220 -2197 655 225 142 87 chr9 21827314 21827865 -120443579 - L1ME4a LINE L1 -3 6118 5538 2050 143 10 0 chr9 21828000 21828301 -120443143 - AluJb SINE Alu -8 304 1 273 29 0 0 chr9 21829224 21829258 -120442186 + (TC)n Simple_repeat Simple_repeat 1 34 0 2137 115 3 40 chr9 21830280 21830603 -120440841 - AluSx SINE Alu -1 311 1 1668 231 91 30 chr9 21830762 21831287 -120440157 - MER69 DNA AcHobo -1969 557 1 326 290 150 5 chr9 21831288 21831481 -120439963 - MARNA DNA Mariner -128 458 238 21 0 0 0 chr9 21832229 21832250 -120439194 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr9 21832623 21832651 -120438793 + (TG)n Simple_repeat Simple_repeat 2 29 0 209 171 0 0 chr9 21833635 21833670 -120437774 + MER5A DNA MER1_type 155 189 0 290 246 191 16 chr9 21833979 21834105 -120437339 + MIR3 SINE MIR 61 208 0 763 196 0 0 chr9 21834118 21834296 -120437148 + FLAM_C SINE Alu 1 178 0 5753 177 46 107 chr9 21834609 21835299 -120436145 + Charlie1 DNA MER1_type 887 1618 -1143 2232 109 0 7 chr9 21835299 21835601 -120435843 - AluY SINE Alu -11 300 1 5753 177 46 107 chr9 21835601 21835923 -120435521 + Charlie1 DNA MER1_type 1618 1958 -803 2323 109 0 10 chr9 21835923 21836235 -120435209 + AluY SINE Alu 1 309 -2 5753 177 46 107 chr9 21836235 21837043 -120434401 + Charlie1 DNA MER1_type 1958 2596 -165 317 206 49 108 chr9 21837204 21837225 -120434219 + Charlie1 DNA MER1_type 2570 2591 -170 2082 88 33 0 chr9 21837225 21837523 -120433921 - AluSg SINE Alu 0 307 1 317 206 49 108 chr9 21837523 21837704 -120433740 + Charlie1 DNA MER1_type 2591 2761 0 216 376 120 0 chr9 21837734 21837859 -120433585 + L2 LINE L2 3133 3272 0 211 277 48 48 chr9 21838340 21838423 -120433021 + L2 LINE L2 3185 3267 -5 302 273 182 49 chr9 21838472 21838615 -120432829 - L2 LINE L2 0 3272 3111 570 258 129 5 chr9 21839700 21839894 -120431550 + MIR SINE MIR 45 262 0 2062 60 24 94 chr9 21841218 21841549 -120429895 - AluYb8 SINE Alu -10 308 1 2183 113 3 0 chr9 21841976 21842267 -120429177 + AluSp SINE Alu 1 292 -21 1437 110 0 0 chr9 21843114 21843296 -120428148 + AluSx SINE Alu 1 182 -130 237 189 19 0 chr9 21843519 21843572 -120427872 + (TA)n Simple_repeat Simple_repeat 1 54 0 375 271 181 23 chr9 21843587 21843642 -120427802 + L1M4 LINE L1 2758 2803 -3343 1952 123 7 7 chr9 21843642 21843943 -120427501 + L1PA10 LINE L1 5868 6168 0 375 271 181 23 chr9 21843943 21844153 -120427291 + L1M4 LINE L1 2803 3065 -3081 244 257 139 10 chr9 21844534 21844635 -120426809 - MIR SINE MIR 0 262 149 1164 189 35 2 chr9 21844646 21844912 -120426532 - L1MB1 LINE L1 -231 5937 5693 931 191 77 23 chr9 21844905 21845077 -120426367 + L1MB1 LINE L1 5936 6124 -44 * 2268 97 3 10 chr9 21845077 21845385 -120426059 + AluY SINE Alu 1 306 -5 931 191 77 23 chr9 21845385 21845432 -120426012 + L1MB1 LINE L1 6124 6167 -1 273 383 13 40 chr9 21845456 21845605 -120425839 + L2 LINE L2 3126 3270 -2 2101 152 0 6 chr9 21845747 21846102 -120425342 - MLT1A1 LTR MaLR -12 353 1 22 56 0 0 chr9 21846195 21846231 -120425213 + AT_rich Low_complexity Low_complexity 1 36 0 1627 232 46 23 chr9 21847740 21848218 -120423226 + L1ME3A LINE L1 5657 6145 -25 811 222 22 5 chr9 21849467 21849652 -120421792 - MLT1E LTR MaLR 0 593 406 271 292 45 0 chr9 21851683 21851772 -120419672 - L2 LINE L2 0 3313 3221 412 302 94 7 chr9 21851994 21852143 -120419301 - L2 LINE L2 -684 2630 2469 395 385 31 10 chr9 21852273 21852468 -120418976 + HAL1 LINE L1 1256 1454 -1053 343 328 64 0 chr9 21852468 21852639 -120418805 + L1MC/D LINE L1 1512 1693 -4703 22 56 0 0 chr9 21852720 21852756 -120418688 + AT_rich Low_complexity Low_complexity 1 36 0 363 306 65 26 chr9 21852918 21853147 -120418297 + L1MC/D LINE L1 2061 2298 -4098 560 279 172 31 chr9 21853212 21854083 -120417361 + L1MC/D LINE L1 3661 4654 -1561 581 163 0 0 chr9 21854099 21854191 -120417253 + FLAM_C SINE Alu 14 105 -38 307 325 36 34 chr9 21854317 21854548 -120416896 + L1MC/D LINE L1 4806 5040 -1175 1859 151 43 32 chr9 21854548 21854918 -120416526 - THE1C LTR MaLR 0 375 2 307 325 36 34 chr9 21854918 21855043 -120416401 + L1MC/D LINE L1 5040 5163 -1052 287 330 19 19 chr9 21855078 21855293 -120416151 + L1MC/D LINE L1 5450 5664 -575 237 271 0 0 chr9 21855387 21855435 -120416009 + G-rich Low_complexity Low_complexity 4 51 0 201 39 0 0 chr9 21855437 21855463 -120415981 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 1100 216 186 43 chr9 21855501 21855899 -120415545 + LTR16A1 LTR ERVL 1 455 -2 230 253 131 0 chr9 21855996 21856095 -120415349 + L1MC/D LINE L1 5728 5839 -2038 28 29 0 0 chr9 21856295 21856330 -120415114 + AT_rich Low_complexity Low_complexity 1 35 0 295 320 0 0 chr9 21856667 21856742 -120414702 + polypurine Low_complexity Low_complexity 2 76 0 740 288 37 21 chr9 21859940 21860183 -120411261 + MIR SINE MIR 2 248 -14 209 190 224 0 chr9 21860252 21860310 -120411134 - L2 LINE L2 -1 3271 3201 41988 42 2 1 chr9 21860479 21866617 -120404827 - L1PA4 LINE L1 -3 6152 7 358 240 139 62 chr9 21866645 21866774 -120404670 + L2 LINE L2 3134 3272 0 214 150 25 0 chr9 21868015 21868055 -120403389 - L2 LINE L2 -18 3254 3214 296 318 28 9 chr9 21868086 21868193 -120403251 - MIR SINE MIR -133 129 21 345 328 66 11 chr9 21868895 21869078 -120402366 - MIR SINE MIR -11 251 59 273 337 0 0 chr9 21869361 21869462 -120401982 - MER115 DNA AcHobo -258 435 335 1093 209 58 102 chr9 21869479 21869872 -120401572 + MLT1B LTR MaLR 15 390 0 663 146 15 102 chr9 21869934 21870140 -120401304 - MER53 DNA DNA 0 189 2 308 246 0 0 chr9 21870276 21870341 -120401103 - Zaphod DNA AcHobo -3966 65 1 263 188 0 0 chr9 21870418 21870466 -120400978 + MIR SINE MIR 90 137 -125 1103 233 90 41 chr9 21870570 21870960 -120400484 + MLT2B1 LTR ERVL 112 520 0 333 169 145 12 chr9 21870960 21871042 -120400402 - MLT1B LTR MaLR -297 93 1 1044 144 0 19 chr9 21871758 21871918 -120399526 + FRAM SINE Alu 1 157 -9 1100 263 127 49 chr9 21872023 21872678 -120398766 + MER50 LTR ERV1 10 715 -19 358 336 149 5 chr9 21874342 21874556 -120396888 + MIR SINE MIR 5 249 -13 24 0 0 0 chr9 21876169 21876193 -120395251 + AT_rich Low_complexity Low_complexity 1 24 0 228 222 0 0 chr9 21876535 21876580 -120394864 + (CA)n Simple_repeat Simple_repeat 2 46 0 189 239 82 114 chr9 21878041 21878225 -120393219 - L2 LINE L2 -12 3301 3124 645 248 139 0 chr9 21878767 21878997 -120392447 - MIR SINE MIR 0 262 1 265 260 13 39 chr9 21879132 21879209 -120392235 - L2 LINE L2 0 3313 3239 1778 209 22 6 chr9 21880318 21880677 -120390767 + MLT1A1 LTR MaLR 1 365 0 497 247 142 5 chr9 21880775 21880965 -120390479 + MIR SINE MIR 46 261 -1 292 314 38 9 chr9 21880996 21881101 -120390343 + MIR SINE MIR 21 128 -80 1835 152 37 39 chr9 21881300 21881655 -120389789 - MLT1A1 LTR MaLR -2 363 10 252 167 21 0 chr9 21882456 21882504 -120388940 + L2 LINE L2 3246 3294 -19 2604 129 48 22 chr9 21883121 21883538 -120387906 + MSTC LTR MaLR 1 428 0 2625 160 21 9 chr9 21884675 21885112 -120386332 - MSTB2 LTR MaLR -1 456 15 563 130 113 9 chr9 21885482 21885597 -120385847 - L2 LINE L2 0 3313 3187 25 65 0 0 chr9 21885604 21885650 -120385794 + AT_rich Low_complexity Low_complexity 1 46 0 278 283 17 42 chr9 21887548 21887668 -120383776 - LTR67 LTR ERVL 0 557 441 228 208 42 0 chr9 21887801 21887849 -120383595 - LTR67 LTR ERVL -393 164 115 1727 220 40 26 chr9 21888047 21888212 -120383232 + MER39 LTR ERV1 271 432 -275 2286 117 22 30 chr9 21888212 21888579 -120382865 + THE1B LTR MaLR 1 364 0 1727 220 40 26 chr9 21888579 21888841 -120382603 + MER39 LTR ERV1 432 704 -3 398 309 52 56 chr9 21888889 21889122 -120382322 - L2 LINE L2 -36 3277 3046 * 529 314 30 21 chr9 21889107 21889343 -120382101 - L2 LINE L2 -444 2870 2633 2357 146 6 6 chr9 21890507 21890871 -120380573 - THE1B LTR MaLR 0 364 1 10548 96 16 71 chr9 21890871 21891943 -120379501 - THE1C-int LTR MaLR 0 1580 631 7227 55 2 3 chr9 21891943 21893070 -120378374 + L1PA5 LINE L1 5027 6153 -1 10548 96 16 71 chr9 21893070 21893668 -120377776 - THE1C-int LTR MaLR -949 631 2 2451 128 5 13 chr9 21893669 21894045 -120377399 - THE1C LTR MaLR 0 375 3 2308 119 0 0 chr9 21894070 21894380 -120377064 + AluSq SINE Alu 1 310 -3 1290 255 76 24 chr9 21894896 21895315 -120376129 - LTR16A1 LTR ERVL 0 457 17 669 261 157 22 chr9 21895454 21895772 -120375672 + MLT1D LTR MaLR 1 361 -144 1852 142 0 0 chr9 21895776 21896051 -120375393 - AluJb SINE Alu -37 275 1 2010 232 24 20 chr9 21896129 21896634 -120374810 - L1ME3A LINE L1 0 6170 5664 669 223 62 5 chr9 21896632 21896825 -120374619 - L1ME3A LINE L1 -1567 4579 4376 * 438 259 52 59 chr9 21897569 21897839 -120373605 - L1ME4a LINE L1 -279 5842 5575 284 322 58 53 chr9 21898533 21898704 -120372740 - MIR SINE MIR -55 207 36 467 239 127 0 chr9 21898794 21898928 -120372516 - MER117 DNA MER1_type -37 160 10 251 277 19 129 chr9 21898957 21899213 -120372231 - MER102b DNA MER1_type -10 331 104 888 268 123 40 chr9 21900058 21900480 -120370964 - MLT1L LTR MaLR 0 615 159 187 374 0 12 chr9 21900830 21900913 -120370531 - MIR3 SINE MIR -118 90 9 196 312 11 54 chr9 21900982 21901075 -120370369 - MIR SINE MIR -70 192 104 795 189 11 44 chr9 21901947 21902127 -120369317 + MER5B DNA MER1_type 5 178 0 289 224 0 0 chr9 21902756 21902814 -120368630 - L2 LINE L2 -8 3264 3207 2250 138 19 11 chr9 21903160 21903521 -120367923 - THE1B LTR MaLR 0 364 1 349 223 146 19 chr9 21903623 21903726 -120367718 + MER117 DNA MER1_type 2 117 -80 1010 292 157 14 chr9 21903786 21904253 -120367191 - MLT1G1 LTR MaLR 0 595 1 1763 160 121 8 chr9 21904302 21904658 -120366786 - MSTD LTR MaLR 0 396 1 252 0 0 0 chr9 21905343 21905371 -120366073 + (CA)n Simple_repeat Simple_repeat 2 29 0 582 261 79 19 chr9 21906013 21906228 -120365216 + MIR SINE MIR 29 256 -6 534 168 37 0 chr9 21906512 21906619 -120364825 + MLT1D LTR MaLR 1 111 -394 485 127 0 0 chr9 21906623 21906694 -120364750 + MLT2B2 LTR ERVL 1 71 -483 1644 222 62 44 chr9 21906791 21907183 -120364261 + MLT2B2 LTR ERVL 75 477 -38 868 94 7 7 chr9 21907183 21907321 -120364123 + (TCTA)n Simple_repeat Simple_repeat 4 141 0 1644 222 62 44 chr9 21907321 21907361 -120364083 + MLT2B2 LTR ERVL 477 515 0 * 1827 224 23 8 chr9 21907361 21907758 -120363686 + MLT1D LTR MaLR 103 505 0 22 80 0 0 chr9 21907845 21907895 -120363549 + AT_rich Low_complexity Low_complexity 1 50 0 1119 233 159 43 chr9 21908147 21908228 -120363216 + MSTD LTR MaLR 2 72 -324 1883 168 20 0 chr9 21908228 21908531 -120362913 + AluJb SINE Alu 1 309 -3 1119 233 159 43 chr9 21908531 21908801 -120362643 + MSTD LTR MaLR 72 394 -2 375 94 0 0 chr9 21908989 21909042 -120362402 - MSTD LTR MaLR 0 396 344 1973 87 3 47 chr9 21909077 21909267 -120362177 - L1PB1 LINE L1 0 6151 5977 2377 80 6 22 chr9 21909267 21909579 -120361865 - AluSc SINE Alu -2 307 1 1973 87 3 47 chr9 21909579 21909687 -120361757 - L1PB1 LINE L1 -174 5977 5866 1741 193 16 41 chr9 21909689 21910057 -120361387 - MSTD LTR MaLR -37 359 1 2494 76 3 0 chr9 21910155 21910459 -120360985 - AluY SINE Alu -6 305 1 314 299 65 14 chr9 21910649 21910813 -120360631 + MIR SINE MIR 16 188 -63 185 330 160 0 chr9 21911327 21911421 -120360023 + L2 LINE L2 3164 3272 0 1510 199 14 4 chr9 21911691 21911967 -120359477 - AluJo SINE Alu -29 283 5 369 243 45 27 chr9 21912629 21912740 -120358704 + MIR SINE MIR 106 218 -44 235 331 50 25 chr9 21912976 21913097 -120358347 + MIR SINE MIR 57 180 -82 7792 89 6 19 chr9 21913741 21914827 -120356617 + MER11C LTR ERVK 1 1071 0 234 234 0 31 chr9 21915149 21915213 -120356231 - MER103 DNA DNA -50 116 55 1349 192 112 14 chr9 21915218 21915494 -120355950 + AluJo SINE Alu 2 304 -8 1573 122 11 66 chr9 21915937 21916224 -120355220 + MLT1B LTR MaLR 120 390 0 537 236 39 77 chr9 21916372 21916613 -120354831 - MLT1J LTR MaLR 0 511 313 228 143 41 20 chr9 21916804 21916853 -120354591 - MLT1L LTR MaLR -564 51 2 374 276 61 0 chr9 21916888 21916986 -120354458 + MER94 DNA DNA 10 113 -21 395 217 29 91 chr9 21917143 21917318 -120354126 - MER5A DNA MER1_type -22 167 4 378 289 47 23 chr9 21917742 21917870 -120353574 - L2 LINE L2 -1 3271 3141 1093 252 72 142 chr9 21918471 21918672 -120352772 + MLT1G1 LTR MaLR 1 215 -380 1701 154 100 4 chr9 21918672 21918952 -120352492 + AluSx SINE Alu 1 307 -5 1093 252 72 142 chr9 21918952 21919390 -120352054 + MLT1G1 LTR MaLR 215 595 0 241 347 0 0 chr9 21919506 21919581 -120351863 - MIR SINE MIR -105 157 83 472 271 51 17 chr9 21919627 21919829 -120351615 + MIR SINE MIR 36 242 -20 198 284 60 0 chr9 21919837 21919904 -120351540 + L2 LINE L2 3201 3271 -1 606 270 81 23 chr9 21921091 21921265 -120350179 - MER91A DNA MER1_type -2 194 11 186 351 0 13 chr9 21921454 21921531 -120349913 - L2 LINE L2 -182 3090 3015 2235 169 39 41 chr9 21922704 21922788 -120348656 - MLT1C LTR MaLR 0 467 384 1493 186 59 10 chr9 21922788 21923078 -120348366 - AluJo SINE Alu -8 304 1 2235 169 39 41 chr9 21923078 21923461 -120347983 - MLT1C LTR MaLR -83 384 1 180 0 0 0 chr9 21925151 21925171 -120346273 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 228 229 0 0 chr9 21925186 21925234 -120346210 + L1MC4 LINE L1 6656 6703 -1339 273 57 0 0 chr9 21925238 21925273 -120346171 + (CA)n Simple_repeat Simple_repeat 2 36 0 12548 146 31 28 chr9 21925273 21927312 -120344132 + Ricksha_c DNA DNA 3 2046 0 238 293 0 13 chr9 21927313 21927388 -120344056 - MIR SINE MIR -182 80 7 285 284 173 31 chr9 21928309 21928412 -120343032 - MIR SINE MIR -33 229 142 2230 106 3 3 chr9 21928412 21928713 -120342731 - AluSx SINE Alu -11 301 1 285 284 173 31 chr9 21928713 21928771 -120342673 - MIR SINE MIR -120 142 45 515 237 38 8 chr9 21928857 21928988 -120342456 - MIR SINE MIR -29 233 99 360 285 88 22 chr9 21929926 21930063 -120341381 - MIR SINE MIR -115 147 2 240 254 28 0 chr9 21930228 21930299 -120341145 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1190 90 6 12 chr9 21930308 21930474 -120340970 - L1MA2 LINE L1 -4 6300 6136 22 0 0 0 chr9 21930918 21930940 -120340504 + AT_rich Low_complexity Low_complexity 1 22 0 350 203 239 22 chr9 21931504 21931642 -120339802 - L1ME4a LINE L1 0 6121 5954 6406 138 34 13 chr9 21931769 21932964 -120338480 - L1MC1 LINE L1 -13 6320 5102 526 293 114 21 chr9 21932974 21933264 -120338180 - L1ME4a LINE L1 -299 5822 5506 412 272 44 63 chr9 21934893 21935051 -120336393 - MIR SINE MIR -77 185 31 2221 102 7 0 chr9 21935295 21935589 -120335855 - AluSc SINE Alu -13 296 1 391 305 58 40 chr9 21935806 21935954 -120335490 - MIR SINE MIR -37 225 72 2395 137 40 13 chr9 21935954 21936334 -120335110 - MLT1B LTR MaLR 0 390 1 391 305 58 40 chr9 21936334 21936359 -120335085 - MIR SINE MIR -190 72 49 180 0 0 0 chr9 21936506 21936526 -120334918 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2214 97 0 3 chr9 21936873 21937161 -120334283 - AluSx SINE Alu -3 309 23 1346 241 96 7 chr9 21937174 21937602 -120333842 + MER113 DNA MER1_type? 6 471 -50 347 173 130 130 chr9 21938147 21938332 -120333112 + MER5A DNA MER1_type 4 188 -1 355 339 33 6 chr9 21938455 21938638 -120332806 + MIR SINE MIR 52 239 -23 548 283 80 26 chr9 21938649 21939021 -120332423 - L2 LINE L2 -6 3307 2874 200 265 48 24 chr9 21939651 21939734 -120331710 - MIR SINE MIR -70 192 108 445 200 19 90 chr9 21939967 21940122 -120331322 - MLT1D LTR MaLR -361 144 1 180 297 22 44 chr9 21940998 21941089 -120330355 - L2 LINE L2 -5 3267 3179 1550 294 93 47 chr9 21941805 21942906 -120328538 - L2 LINE L2 -1 3312 2158 300 322 67 38 chr9 21943267 21943686 -120327758 + L1MC/D LINE L1 3991 4421 -1725 533 281 122 50 chr9 21943733 21944619 -120326825 + L1MC/D LINE L1 4633 5615 -974 2377 92 0 3 chr9 21944619 21944925 -120326519 - AluY SINE Alu -6 305 1 533 281 122 50 chr9 21944925 21945118 -120326326 + L1MC/D LINE L1 5615 5793 -796 188 269 96 0 chr9 21945524 21945576 -120325868 + MIR SINE MIR 206 262 0 229 273 0 15 chr9 21945930 21945996 -120325448 + MLT1K LTR MaLR 182 246 -342 180 0 0 0 chr9 21946307 21946327 -120325117 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1021 201 159 70 chr9 21946615 21947012 -120324432 - MSTB1 LTR MaLR 0 432 1 1621 215 49 62 chr9 21947012 21947478 -120323966 - MLT1C LTR MaLR -7 460 1 488 281 75 26 chr9 21947532 21947966 -120323478 - LTR33A LTR ERVL -20 503 4 724 209 0 0 chr9 21948933 21949062 -120322382 - FRAM SINE Alu -19 157 29 192 271 0 21 chr9 21949752 21949800 -120321644 + L2 LINE L2 3267 3313 0 310 276 127 15 chr9 21950567 21950701 -120320743 - L2 LINE L2 -2 3270 3122 470 250 0 10 chr9 21953379 21953475 -120317969 - MER5B DNA MER1_type -16 162 68 1436 191 118 0 chr9 21954114 21954376 -120317068 + AluJb SINE Alu 1 293 -9 255 221 59 0 chr9 21956670 21956738 -120314706 - MIR SINE MIR -10 252 181 499 218 148 0 chr9 21956749 21956891 -120314553 + L2 LINE L2 2686 2848 -466 329 257 191 14 chr9 21956987 21957197 -120314247 + L2 LINE L2 3020 3266 -47 336 193 104 0 chr9 21957237 21957331 -120314113 - MIR SINE MIR -62 146 57 280 324 157 0 chr9 21957771 21957879 -120313565 + L2 LINE L2 3148 3272 0 2016 128 3 46 chr9 21958196 21958523 -120312921 + AluSq SINE Alu 1 313 0 1521 228 137 30 chr9 21958950 21959075 -120312369 + MLT1E LTR MaLR 70 180 -413 2360 92 0 0 chr9 21959075 21959370 -120312074 - AluSc SINE Alu -14 295 1 1521 228 137 30 chr9 21959370 21959717 -120311727 + MLT1E LTR MaLR 180 593 0 331 337 70 26 chr9 21959830 21960100 -120311344 + L2 LINE L2 2693 2974 -340 21 36 0 0 chr9 21962542 21962570 -120308874 + AT_rich Low_complexity Low_complexity 1 28 0 618 266 176 37 chr9 21962845 21963422 -120308022 + L1MC4 LINE L1 7276 8029 -13 22 0 0 0 chr9 21963422 21963444 -120308000 + AT_rich Low_complexity Low_complexity 1 22 0 305 265 17 77 chr9 21963998 21964115 -120307329 - MER5A DNA MER1_type -25 164 55 267 270 180 0 chr9 21964171 21964282 -120307162 + MER5B DNA MER1_type 9 139 -39 439 242 105 16 chr9 21964282 21964406 -120307038 + MER5B DNA MER1_type 13 147 -31 261 278 0 56 chr9 21964826 21964898 -120306546 + L2 LINE L2 3240 3307 -6 2128 216 64 15 chr9 21965138 21965316 -120306128 + MLT1D LTR MaLR 1 169 -336 1849 157 14 3 chr9 21965316 21965603 -120305841 + AluJo SINE Alu 7 296 -16 2128 216 64 15 chr9 21965603 21965905 -120305539 + MLT1D LTR MaLR 169 505 0 549 299 72 23 chr9 21966850 21967071 -120304373 - MIR SINE MIR -1 261 30 554 222 50 23 chr9 21967724 21967865 -120303579 + MER39 LTR ERV1 1 125 -484 2254 84 3 3 chr9 21967896 21968183 -120303261 + AluSq SINE Alu 2 288 -25 1658 188 116 8 chr9 21968183 21968544 -120302900 + MER39 LTR ERV1 308 707 0 559 231 0 0 chr9 21968658 21968762 -120302682 - MER94 DNA DNA -4 130 27 832 270 6 0 chr9 21968762 21968936 -120302508 + FAM SINE Alu 1 175 0 2376 80 0 10 chr9 21969097 21969409 -120302035 + AluY SINE Alu 1 309 -2 368 222 52 67 chr9 21969487 21969622 -120301822 + MER103 DNA DNA 19 151 -15 495 249 85 30 chr9 21969686 21969851 -120301593 - L2 LINE L2 -5 3308 3135 513 32 0 0 chr9 21970309 21970372 -120301072 + (CA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr9 21972111 21972133 -120299311 + AT_rich Low_complexity Low_complexity 1 22 0 291 93 0 0 chr9 21973011 21973054 -120298390 + (TA)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chr9 21973371 21973401 -120298043 + (A)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr9 21974563 21974588 -120296856 + AT_rich Low_complexity Low_complexity 1 25 0 186 71 0 0 chr9 21976566 21976594 -120294850 + (A)n Simple_repeat Simple_repeat 1 28 0 231 114 0 0 chr9 21977262 21977297 -120294147 + (A)n Simple_repeat Simple_repeat 1 35 0 445 259 38 8 chr9 21977314 21977445 -120293999 + L1ME3A LINE L1 5983 6117 -53 364 371 54 5 chr9 21977615 21977836 -120293608 - L1M4 LINE L1 -1991 4155 3924 346 309 43 68 chr9 21978572 21978850 -120292594 + MLT1J LTR MaLR 216 486 -25 200 184 0 0 chr9 21979005 21979043 -120292401 + (CA)n Simple_repeat Simple_repeat 1 38 0 321 318 45 32 chr9 21979309 21979500 -120291944 + MIR SINE MIR 20 208 -54 2677 23 0 0 chr9 21980501 21980803 -120290641 + AluYa5 SINE Alu 1 302 -9 198 0 0 0 chr9 21985283 21985305 -120286139 + (A)n Simple_repeat Simple_repeat 1 22 0 206 324 68 0 chr9 21986141 21986215 -120285229 + MIR SINE MIR 12 90 -172 192 351 0 0 chr9 21986223 21986280 -120285164 + MIR3 SINE MIR 137 193 -15 218 255 0 0 chr9 21988117 21988164 -120283280 + CT-rich Low_complexity Low_complexity 5 51 0 306 0 0 0 chr9 21988169 21988203 -120283241 + (CA)n Simple_repeat Simple_repeat 1 34 0 2321 66 33 7 chr9 21989062 21989363 -120282081 + AluSc SINE Alu 1 309 0 340 260 72 11 chr9 21990385 21990545 -120280899 - MIR SINE MIR 0 262 93 579 271 187 5 chr9 21991158 21991372 -120280072 - MIR SINE MIR -8 254 2 198 0 0 0 chr9 21992894 21992916 -120278528 + (T)n Simple_repeat Simple_repeat 1 22 0 1697 102 8 43 chr9 21995511 21995802 -120275642 - AluY SINE Alu 0 315 34 629 56 34 0 chr9 21996232 21996248 -120275196 + L1P LINE L1 5332 5346 -826 5753 50 10 1 chr9 21996248 21996970 -120274474 - L1PA7 LINE L1 -11 6143 5416 629 56 34 0 chr9 21996970 21997042 -120274402 + L1P LINE L1 5346 5423 -749 191 313 26 70 chr9 21997524 21997639 -120273805 + L2 LINE L2 3136 3245 -27 520 171 45 96 chr9 21999152 21999351 -120272093 - MER5A DNA MER1_type 0 189 1 213 284 68 26 chr9 21999419 21999514 -120271930 - MER5A DNA MER1_type -79 110 1 14638 119 30 12 chr9 22000351 22000704 -120270740 + Tigger1 DNA MER2_type 108 453 -1965 2169 118 0 0 chr9 22000704 22000993 -120270451 - AluSq SINE Alu -19 294 6 14638 119 30 12 chr9 22000993 22002580 -120268864 + Tigger1 DNA MER2_type 453 2097 -321 2162 70 32 64 chr9 22002580 22002894 -120268550 - AluY SINE Alu -7 304 1 14638 119 30 12 chr9 22002894 22003221 -120268223 + Tigger1 DNA MER2_type 2097 2417 -1 1878 164 0 3 chr9 22004287 22004579 -120266865 + AluJo SINE Alu 1 291 -21 1557 203 54 41 chr9 22005000 22005362 -120266082 + MLT1A2 LTR MaLR 12 374 0 264 269 168 34 chr9 22005384 22005503 -120265941 - MIR3 SINE MIR -66 142 8 2488 65 0 3 chr9 22005782 22006092 -120265352 - AluY SINE Alu 0 311 3 192 405 33 8 chr9 22006815 22006936 -120264508 - L3b LINE CR1 -282 1301 1178 235 201 13 141 chr9 22008288 22008437 -120263007 + Charlie7 DNA MER1_type 2433 2562 -50 23 68 0 0 chr9 22011813 22011857 -120259587 + AT_rich Low_complexity Low_complexity 1 44 0 621 293 74 33 chr9 22013576 22013818 -120257626 + MIR SINE MIR 11 262 0 21 36 0 0 chr9 22013830 22013858 -120257586 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 22015240 22015265 -120256179 + AT_rich Low_complexity Low_complexity 1 25 0 1049 220 13 47 chr9 22017280 22017512 -120253932 - MER58A DNA MER1_type 0 224 1 2251 92 0 0 chr9 22018493 22018786 -120252658 + AluY SINE Alu 1 293 -18 1957 207 9 29 chr9 22019232 22019676 -120251768 + L1MB8 LINE L1 5676 6110 -68 1554 199 3 18 chr9 22019681 22019963 -120251481 + AluJo SINE Alu 3 280 -32 206 167 0 48 chr9 22019964 22020006 -120251438 + GA-rich Low_complexity Low_complexity 1 40 0 304 309 0 12 chr9 22020674 22020758 -120250686 - L2 LINE L2 -21 3251 3169 661 226 0 0 chr9 22021018 22021133 -120250311 + FLAM_A SINE Alu 1 115 -18 512 148 33 66 chr9 22021160 22021282 -120250162 - L1ME3 LINE L1 -6 6156 6039 22 35 0 0 chr9 22022081 22022110 -120249334 + AT_rich Low_complexity Low_complexity 1 29 0 1203 344 155 20 chr9 22022403 22023081 -120248363 - L3 LINE CR1 -372 1205 379 2099 98 4 7 chr9 22023081 22023355 -120248089 + AluSq SINE Alu 22 294 -19 1203 344 155 20 chr9 22023355 22023558 -120247886 - L3 LINE CR1 -1198 379 205 366 250 202 27 chr9 22026514 22026702 -120244742 - MIR SINE MIR -13 249 29 1215 182 105 0 chr9 22028295 22028553 -120242891 - AluJo SINE Alu -16 296 12 234 262 83 12 chr9 22029539 22029623 -120241821 - L2 LINE L2 -16 3297 3208 2129 217 75 70 chr9 22029985 22030908 -120240536 + L1MC5 LINE L1 6991 7917 -44 206 304 152 22 chr9 22031377 22031469 -120239975 + L2 LINE L2 3206 3309 -4 874 257 63 73 chr9 22031666 22032063 -120239381 - MLT1J LTR MaLR -114 397 5 244 261 117 27 chr9 22033332 22033443 -120238001 + MIR3 SINE MIR 88 208 0 1829 171 0 10 chr9 22034006 22034305 -120237139 - AluJb SINE Alu -14 298 3 1701 188 7 3 chr9 22034700 22034992 -120236452 - AluJo SINE Alu -19 293 1 26 0 0 0 chr9 22035150 22035176 -120236268 + AT_rich Low_complexity Low_complexity 1 26 0 231 227 61 61 chr9 22035684 22035750 -120235694 + MIR SINE MIR 23 88 -174 2218 126 0 0 chr9 22036016 22036325 -120235119 + AluSx SINE Alu 1 309 -3 628 150 0 26 chr9 22036332 22036445 -120234999 + FLAM_A SINE Alu 21 130 -12 703 251 31 26 chr9 22037856 22038051 -120233393 + MIR SINE MIR 49 244 -18 612 254 73 17 chr9 22040540 22040717 -120230727 - MIR SINE MIR -44 218 32 201 157 0 137 chr9 22041200 22041251 -120230193 - MIR3 SINE MIR -23 185 142 264 261 268 0 chr9 22042134 22042276 -120229168 + MER112 DNA MER1_type 69 248 -12 216 286 18 0 chr9 22043077 22043133 -120228311 + L3 LINE CR1 1519 1575 -2 410 217 9 9 chr9 22043329 22043435 -120228009 + L1MA10 LINE L1 6229 6334 0 1050 32 0 0 chr9 22044463 22044589 -120226855 + (CTG)n Simple_repeat Simple_repeat 1 126 0 192 353 87 17 chr9 22045049 22045222 -120226222 - L2 LINE L2 -237 3035 2851 24 0 0 0 chr9 22046998 22047022 -120224422 + AT_rich Low_complexity Low_complexity 1 24 0 211 28 56 0 chr9 22047363 22047399 -120224045 + (TA)n Simple_repeat Simple_repeat 2 39 0 287 105 40 13 chr9 22047527 22047603 -120223841 + (TA)n Simple_repeat Simple_repeat 2 79 0 479 119 0 0 chr9 22048508 22048575 -120222869 + U4 snRNA snRNA 1 67 -78 969 193 0 11 chr9 22048794 22048970 -120222474 - FAM SINE Alu -1 174 1 590 288 102 65 chr9 22049360 22049894 -120221550 + L1MEd LINE L1 904 1580 -910 1264 143 0 29 chr9 22050040 22050249 -120221195 + AluSc SINE Alu 103 305 -4 801 219 5 21 chr9 22050249 22050441 -120221003 + L1MC4 LINE L1 7697 7885 -157 853 152 0 0 chr9 22051313 22051445 -120219999 - FLAM_A SINE Alu 0 133 2 223 325 25 0 chr9 22052818 22052898 -120218546 + MIR3 SINE MIR 118 199 -9 611 292 32 9 chr9 22052996 22053212 -120218232 - MIR SINE MIR -37 225 5 203 267 13 53 chr9 22053550 22053625 -120217819 - L2 LINE L2 -1115 2199 2128 323 347 25 0 chr9 22054369 22054490 -120216954 + MER91A DNA MER1_type 2 125 -71 1429 175 48 26 chr9 22054525 22054688 -120216756 - AluJo SINE Alu -22 290 117 249 33 0 0 chr9 22054688 22054718 -120216726 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1429 175 48 26 chr9 22054718 22054822 -120216622 - AluJo SINE Alu -195 117 17 455 189 0 0 chr9 22055253 22055343 -120216101 + AluSg/x SINE Alu 218 307 -2 957 259 98 15 chr9 22058059 22058395 -120213049 + L1MC/D LINE L1 5352 5715 -2093 1430 187 85 36 chr9 22059115 22059539 -120211905 - LTR54 LTR ERV1 0 510 1 349 217 0 54 chr9 22060107 22060201 -120211243 + MER2 DNA MER2_type 1 87 -152 265 314 25 50 chr9 22062022 22062143 -120209301 - MIR3 SINE MIR -76 132 15 218 195 24 0 chr9 22062816 22062857 -120208587 + CT-rich Low_complexity Low_complexity 5 46 0 359 315 75 7 chr9 22062898 22063044 -120208400 - MIR3 SINE MIR -43 165 10 378 275 55 0 chr9 22063263 22063354 -120208090 - L2 LINE L2 -21 3251 3156 223 280 80 30 chr9 22063963 22064063 -120207381 - MIR3 SINE MIR -23 185 81 29 0 0 0 chr9 22064080 22064109 -120207335 + AT_rich Low_complexity Low_complexity 1 29 0 259 330 239 6 chr9 22065778 22065954 -120205490 - MIR SINE MIR -38 224 8 2305 104 0 0 chr9 22066329 22066638 -120204806 - AluSc SINE Alu 0 309 1 695 177 8 23 chr9 22066657 22066787 -120204657 + FLAM_A SINE Alu 1 128 -5 1201 167 21 13 chr9 22067592 22067826 -120203618 + MER46A DNA MER2_type 1 236 0 23 54 0 0 chr9 22068373 22068410 -120203034 + AT_rich Low_complexity Low_complexity 1 37 0 338 278 41 125 chr9 22069264 22069584 -120201860 + L2 LINE L2 2991 3283 -30 29 84 0 0 chr9 22069694 22069765 -120201679 + AT_rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr9 22069915 22069940 -120201504 + AT_rich Low_complexity Low_complexity 1 25 0 414 159 0 0 chr9 22071290 22071353 -120200091 - AluS SINE Alu -236 63 1 1264 203 117 34 chr9 22071376 22072031 -120199413 - L1MC4 LINE L1 -372 7670 6801 218 309 179 0 chr9 22072164 22072248 -120199196 + L2 LINE L2 3198 3296 -17 312 206 10 98 chr9 22072248 22072350 -120199094 - L2 LINE L2 0 3313 3221 21 0 0 0 chr9 22072896 22072917 -120198527 + AT_rich Low_complexity Low_complexity 1 21 0 182 205 244 13 chr9 22072964 22073042 -120198402 + MIR SINE MIR 154 249 -13 472 222 7 85 chr9 22073539 22073692 -120197752 + MER112 DNA MER1_type 1 141 -119 694 261 27 21 chr9 22073794 22073982 -120197462 - MER5A DNA MER1_type 0 189 1 620 273 146 34 chr9 22073990 22074961 -120196483 - L1ME LINE L1 -514 5648 4550 1877 146 10 0 chr9 22077751 22078039 -120193405 + AluJb SINE Alu 10 300 -12 838 207 56 61 chr9 22078042 22078255 -120193189 + AluJb SINE Alu 84 295 -17 720 258 30 5 chr9 22081092 22081290 -120190154 - L1ME LINE L1 -380 5741 5539 344 366 147 35 chr9 22081359 22082397 -120189047 - L2 LINE L2 -127 3145 2005 246 370 68 52 chr9 22082847 22083451 -120187993 - L2 LINE L2 -2 3270 2659 2375 97 62 3 chr9 22084178 22084530 -120186914 + THE1C LTR MaLR 1 373 -2 1278 179 20 77 chr9 22084717 22085014 -120186430 + L1MB1 LINE L1 5878 6157 -11 1866 149 7 7 chr9 22085264 22085560 -120185884 + AluJb SINE Alu 1 296 -16 243 218 0 0 chr9 22086218 22086273 -120185171 + (TG)n Simple_repeat Simple_repeat 1 55 0 752 189 37 20 chr9 22086821 22087032 -120184412 + L1M4 LINE L1 5313 5527 -634 562 274 91 11 chr9 22087405 22087580 -120183864 - MER5A DNA MER1_type 0 189 1 633 266 40 17 chr9 22087701 22087878 -120183566 - MIR SINE MIR -1 261 81 2293 93 0 22 chr9 22087913 22088224 -120183220 - AluSx SINE Alu -8 304 1 2404 81 3 3 chr9 22089224 22089534 -120181910 - AluSp SINE Alu -3 310 1 198 393 25 8 chr9 22090339 22090461 -120180983 + MIR3 SINE MIR 41 164 -44 1403 201 113 9 chr9 22090461 22090780 -120180664 + MLT1A1 LTR MaLR 2 353 -12 492 256 153 17 chr9 22091154 22091330 -120180114 - MIR SINE MIR -25 237 38 479 168 232 24 chr9 22091330 22091455 -120179989 - FRAM SINE Alu -18 158 8 381 200 0 0 chr9 22091726 22091791 -120179653 - MER2 DNA MER2_type -5 340 276 1376 152 123 29 chr9 22091795 22092071 -120179373 + AluJo SINE Alu 1 302 0 558 137 199 48 chr9 22092071 22092212 -120179232 + AluJo/FRAM SINE Alu 134 296 -16 1203 177 5 19 chr9 22092249 22092458 -120178986 - MER2 DNA MER2_type -139 206 1 301 250 57 93 chr9 22093041 22093181 -120178263 + MIR SINE MIR 115 249 -13 28 0 0 0 chr9 22094132 22094160 -120177284 + AT_rich Low_complexity Low_complexity 1 28 0 32 57 0 0 chr9 22094215 22094268 -120177176 + AT_rich Low_complexity Low_complexity 1 53 0 692 273 114 50 chr9 22095253 22095847 -120175597 + L1MEd LINE L1 595 1226 -4893 760 222 53 76 chr9 22095989 22096291 -120175153 - MER63 DNA MER1_type -1 1060 766 505 163 0 31 chr9 22097040 22097138 -120174306 + FRAM SINE Alu 74 168 -8 242 295 0 0 chr9 22098421 22098482 -120172962 + MARNA DNA Mariner 178 238 -348 774 251 18 6 chr9 22100051 22100222 -120171222 - MER5A DNA MER1_type 0 189 17 347 274 18 53 chr9 22101599 22101712 -120169732 - MIR SINE MIR -122 140 32 204 281 53 0 chr9 22101990 22102047 -120169397 + L2 LINE L2 3251 3310 -3 21 0 0 0 chr9 22102387 22102408 -120169036 + AT_rich Low_complexity Low_complexity 1 21 0 1703 144 31 24 chr9 22103504 22103795 -120167649 - AluJo SINE Alu -19 293 1 264 269 74 57 chr9 22103874 22103961 -120167483 - MER104 DNA Tc2 -1718 180 96 2392 74 0 13 chr9 22103961 22104273 -120167171 - AluY SINE Alu -3 308 1 264 269 74 57 chr9 22104273 22104360 -120167084 - MER104 DNA Tc2 -1802 96 3 213 389 71 0 chr9 22104943 22105069 -120166375 + L2 LINE L2 3137 3271 -1 2302 103 3 0 chr9 22105239 22105551 -120165893 - AluSq SINE Alu 0 313 1 219 69 0 0 chr9 22106008 22106037 -120165407 + (TG)n Simple_repeat Simple_repeat 1 29 0 225 312 85 7 chr9 22106618 22106759 -120164685 + L1M4 LINE L1 4457 4608 -1538 453 219 7 89 chr9 22208055 22208201 -120063243 - MER112 DNA MER1_type -126 134 1 21 0 0 0 chr9 22208823 22208844 -120062600 + AT_rich Low_complexity Low_complexity 1 21 0 312 206 10 98 chr9 22209390 22209492 -120061952 + L2 LINE L2 3221 3313 0 218 309 179 0 chr9 22209492 22209576 -120061868 - L2 LINE L2 -17 3296 3198 890 188 152 0 chr9 22209709 22209959 -120061485 + L1MC4 LINE L1 6801 7088 -954 2154 205 91 41 chr9 22209962 22210383 -120061061 + L1MC4 LINE L1 7241 7704 -338 2226 109 0 26 chr9 22210383 22210696 -120060748 + AluSc SINE Alu 1 305 -4 2154 205 91 41 chr9 22210696 22210888 -120060556 + L1MC4 LINE L1 7704 7885 -157 853 152 0 0 chr9 22211760 22211892 -120059552 - FLAM_A SINE Alu 0 133 2 223 325 25 0 chr9 22213265 22213345 -120058099 + MIR3 SINE MIR 118 199 -9 611 292 32 9 chr9 22213443 22213659 -120057785 - MIR SINE MIR -37 225 5 203 267 13 53 chr9 22213997 22214072 -120057372 - L2 LINE L2 -1115 2199 2128 323 347 25 0 chr9 22214816 22214937 -120056507 + MER91A DNA MER1_type 2 125 -71 1429 175 48 26 chr9 22214972 22215135 -120056309 - AluJo SINE Alu -22 290 117 249 33 0 0 chr9 22215135 22215165 -120056279 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1429 175 48 26 chr9 22215165 22215269 -120056175 - AluJo SINE Alu -195 117 17 1973 151 3 6 chr9 22215623 22215934 -120055510 + AluSx SINE Alu 1 310 -2 957 259 98 15 chr9 22218650 22218986 -120052458 + L1MC/D LINE L1 5352 5715 -2093 354 169 0 0 chr9 22219640 22219705 -120051739 + GA-rich Low_complexity Low_complexity 2 66 0 256 336 39 10 chr9 22220357 22220461 -120050983 - MIR SINE MIR -91 171 65 34 55 0 0 chr9 22221015 22221070 -120050374 + AT_rich Low_complexity Low_complexity 1 55 0 2009 151 3 0 chr9 22221141 22221440 -120050004 + AluJb SINE Alu 1 300 -12 852 207 56 61 chr9 22221443 22221656 -120049788 + AluJb SINE Alu 84 295 -17 259 370 68 52 chr9 22225262 22225866 -120045578 + L2 LINE L2 2659 3270 -2 415 362 147 36 chr9 22226316 22227355 -120044089 + L2 LINE L2 2005 3145 -127 707 258 30 5 chr9 22227424 22227622 -120043822 + L1MB1 LINE L1 5539 5741 -380 2392 97 62 3 chr9 22228743 22229095 -120042349 + THE1C LTR MaLR 1 373 -2 1269 179 20 77 chr9 22229282 22229579 -120041865 + L1MB1 LINE L1 5878 6157 -11 1900 149 7 7 chr9 22229829 22230125 -120041319 + AluJb SINE Alu 1 296 -16 243 218 0 0 chr9 22230783 22230838 -120040606 + (TG)n Simple_repeat Simple_repeat 1 55 0 741 189 37 20 chr9 22231386 22231597 -120039847 + L1M4 LINE L1 5313 5527 -634 181 297 40 27 chr9 22231807 22231881 -120039563 + MIR SINE MIR 9 83 -179 565 274 91 11 chr9 22231970 22232145 -120039299 - MER5A DNA MER1_type 0 189 1 624 266 40 17 chr9 22232266 22232443 -120039001 - MIR SINE MIR -1 261 81 2323 93 0 22 chr9 22232478 22232789 -120038655 - AluSx SINE Alu -8 304 1 2433 81 3 3 chr9 22233789 22234099 -120037345 - AluSp SINE Alu -3 310 1 202 393 25 8 chr9 22234904 22235026 -120036418 + MIR3 SINE MIR 41 164 -44 1420 201 113 9 chr9 22235026 22235345 -120036099 + MLT1A1 LTR MaLR 2 353 -12 28 61 0 0 chr9 22238115 22238164 -120033280 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr9 22240546 22240571 -120030873 + AT_rich Low_complexity Low_complexity 1 25 0 29 84 0 0 chr9 22240721 22240792 -120030652 + AT_rich Low_complexity Low_complexity 1 71 0 338 278 41 125 chr9 22240902 22241222 -120030222 - L2 LINE L2 -30 3283 2991 23 54 0 0 chr9 22242076 22242113 -120029331 + AT_rich Low_complexity Low_complexity 1 37 0 1201 167 21 13 chr9 22242660 22242894 -120028550 - MER46A DNA MER2_type 0 236 1 695 177 8 23 chr9 22243699 22243829 -120027615 - FLAM_A SINE Alu -5 128 1 2305 104 0 0 chr9 22243848 22244157 -120027287 + AluSc SINE Alu 1 309 0 259 330 239 6 chr9 22244532 22244708 -120026736 + MIR SINE MIR 8 224 -38 263 299 167 14 chr9 22245166 22245310 -120026134 + MIR3 SINE MIR 35 200 -8 202 281 53 0 chr9 22246881 22246938 -120024506 - L2 LINE L2 -3 3310 3251 346 274 18 53 chr9 22247216 22247329 -120024115 + MIR SINE MIR 32 140 -122 780 251 18 6 chr9 22248706 22248877 -120022567 + MER5A DNA MER1_type 17 189 0 237 295 0 0 chr9 22250446 22250507 -120020937 - MARNA DNA Mariner -348 238 178 508 163 0 31 chr9 22251790 22251888 -120019556 - FRAM SINE Alu -8 168 74 29 0 0 0 chr9 22253305 22253334 -120018110 + AT_rich Low_complexity Low_complexity 1 29 0 223 280 80 30 chr9 22253351 22253451 -120017993 + MIR3 SINE MIR 81 185 -23 378 275 55 0 chr9 22254060 22254151 -120017293 + L2 LINE L2 3156 3251 -21 359 315 75 7 chr9 22254370 22254516 -120016928 + MIR3 SINE MIR 10 165 -43 218 195 24 0 chr9 22254557 22254598 -120016846 + GA-rich Low_complexity Low_complexity 5 46 0 265 314 25 50 chr9 22255271 22255392 -120016052 + MIR3 SINE MIR 15 132 -76 349 217 0 54 chr9 22257213 22257307 -120014137 - MER2 DNA MER2_type -152 87 1 1430 187 85 36 chr9 22257875 22258299 -120013145 + LTR54 LTR ERV1 1 510 0 1732 144 31 24 chr9 22258975 22259266 -120012178 - AluJo SINE Alu -19 293 1 250 269 74 57 chr9 22259345 22259432 -120012012 - MER104 DNA Tc2 -1718 180 96 2427 74 0 13 chr9 22259432 22259744 -120011700 - AluY SINE Alu -3 308 1 250 269 74 57 chr9 22259744 22259831 -120011613 - MER104 DNA Tc2 -1802 96 3 214 389 71 0 chr9 22260414 22260540 -120010904 + L2 LINE L2 3137 3271 -1 2332 103 3 0 chr9 22260710 22261022 -120010422 - AluSq SINE Alu 0 313 1 219 69 0 0 chr9 22261479 22261508 -120009936 + (TG)n Simple_repeat Simple_repeat 1 29 0 240 282 74 23 chr9 22262390 22262606 -120008838 + L1ME LINE L1 5628 5854 -267 453 219 188 31 chr9 22264125 22264285 -120007159 + MER5A DNA MER1_type 4 188 -1 487 192 54 69 chr9 22265495 22265625 -120005819 + MLT2E LTR ERVL 1 128 -500 483 265 22 7 chr9 22265825 22265961 -120005483 + MLT2E LTR ERVL 488 625 -3 494 191 52 15 chr9 22266169 22266187 -120005257 - L1MA10 LINE L1 -13 6321 6304 2889 215 46 60 chr9 22266187 22266833 -120004611 - L1ME1 LINE L1 -27 6139 5486 2042 131 3 22 chr9 22266833 22267147 -120004297 + AluSx SINE Alu 5 312 0 2889 215 46 60 chr9 22267147 22267413 -120004031 - L1ME1 LINE L1 -680 5486 5253 1508 76 49 18 chr9 22267413 22267636 -120003808 - MER30 DNA MER1_type 0 230 1 2889 215 46 60 chr9 22267636 22267732 -120003712 - L1ME1 LINE L1 -913 5253 5157 1835 197 55 20 chr9 22267780 22268231 -120003213 - MLT1C LTR MaLR 0 467 1 584 163 0 0 chr9 22268278 22268370 -120003074 + L1MC1 LINE L1 6224 6315 -18 681 198 0 0 chr9 22268683 22268799 -120002645 + FLAM_A SINE Alu 11 126 -16 956 265 159 51 chr9 22268925 22269465 -120001979 - MLT1G1 LTR MaLR 0 555 1 183 129 0 0 chr9 22269895 22269926 -120001518 + (CA)n Simple_repeat Simple_repeat 2 32 0 290 355 32 79 chr9 22270156 22270345 -120001099 - L2 LINE L2 -11 3261 3082 2851 22 0 0 chr9 22270359 22270676 -120000768 + AluYb8 SINE Alu 1 317 -1 2144 125 0 0 chr9 22270688 22270983 -120000461 + AluSq SINE Alu 1 295 -18 6331 144 22 27 chr9 22271326 22271348 -120000096 + L1MA8 LINE L1 4208 4229 -2062 1919 157 58 0 chr9 22271348 22271673 -119999771 - MER2 DNA MER2_type 0 344 1 6331 144 22 27 chr9 22271673 22273240 -119998204 + L1MA8 LINE L1 4229 5784 -507 207 0 0 0 chr9 22273240 22273263 -119998181 + (TG)n Simple_repeat Simple_repeat 2 24 0 6331 144 22 27 chr9 22273263 22273766 -119997678 + L1MA8 LINE L1 5784 6288 -3 1824 116 116 0 chr9 22274953 22275230 -119996214 - AluSx SINE Alu -3 309 1 22 0 0 0 chr9 22278754 22278776 -119992668 + AT_rich Low_complexity Low_complexity 1 22 0 184 308 178 9 chr9 22278785 22278892 -119992552 + MIR SINE MIR 66 190 -72 360 261 139 57 chr9 22278894 22279134 -119992310 + L1MC4a LINE L1 5084 5342 -804 450 292 71 56 chr9 22279135 22279221 -119992223 + L1MC4a LINE L1 5355 5438 -683 2332 96 0 3 chr9 22279221 22279523 -119991921 + AluSg SINE Alu 2 302 -8 450 292 71 56 chr9 22279523 22279949 -119991495 + L1MC4a LINE L1 5438 5824 -297 32 43 0 0 chr9 22279978 22280024 -119991420 + AT_rich Low_complexity Low_complexity 1 46 0 509 146 104 0 chr9 22280463 22280559 -119990885 + FAM SINE Alu 38 143 -42 266 203 0 14 chr9 22280597 22280671 -119990773 + (CA)n Simple_repeat Simple_repeat 1 73 0 294 200 15 0 chr9 22280760 22280825 -119990619 - MER117 DNA MER1_type -50 147 82 657 217 174 0 chr9 22281266 22281427 -119990017 + MER5A DNA MER1_type 1 189 0 4557 167 61 6 chr9 22281905 22282756 -119988688 + MER54A LTR ERVL 1 898 -3 1247 190 58 10 chr9 22282836 22283131 -119988313 - HERVL74 LTR ERVL -544 5141 4833 510 215 104 7 chr9 22283159 22283303 -119988141 - HERVL74 LTR ERVL -939 4746 4589 481 207 43 17 chr9 22283299 22283415 -119988029 - HERVL74 LTR ERVL -1670 4015 3897 * 919 183 0 12 chr9 22283410 22283579 -119987865 - HERVL74 LTR ERVL -2034 3651 3485 * 981 218 13 39 chr9 22283577 22283829 -119987615 - HERVL74 LTR ERVL -2360 3325 2984 2355 85 0 3 chr9 22283829 22284135 -119987309 - AluSg SINE Alu -5 305 1 981 218 13 39 chr9 22284135 22284257 -119987187 - HERVL74 LTR ERVL -2701 2984 2860 2515 204 55 101 chr9 22286171 22286315 -119985129 + L1MC4a LINE L1 6611 6760 -1048 318 102 0 0 chr9 22286315 22286364 -119985080 + AluSc SINE Alu 250 298 -1 2515 204 55 101 chr9 22286364 22286444 -119985000 + L1MC4a LINE L1 6760 6842 -966 2083 135 3 7 chr9 22286444 22286748 -119984696 + AluSq SINE Alu 1 303 -10 2515 204 55 101 chr9 22286748 22286947 -119984497 + L1MC4a LINE L1 6842 7049 -759 2111 83 3 28 chr9 22286947 22287264 -119984180 + AluSx SINE Alu 1 310 0 2515 204 55 101 chr9 22287264 22287825 -119983619 + L1MC4a LINE L1 7049 7590 -218 898 191 43 47 chr9 22288033 22288289 -119983155 + L1MD3 LINE L1 7737 7991 -4 5969 74 1 1 chr9 22288438 22289258 -119982186 + L1PA13 LINE L1 5344 6163 0 339 341 35 18 chr9 22289543 22289713 -119981731 - L2 LINE L2 -211 3061 2889 23 0 0 0 chr9 22289903 22289926 -119981518 + AT_rich Low_complexity Low_complexity 1 23 0 2038 145 3 7 chr9 22289950 22290260 -119981184 - AluSx SINE Alu -3 309 1 309 51 0 0 chr9 22290336 22290375 -119981069 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 29 0 0 chr9 22291174 22291209 -119980235 + AT_rich Low_complexity Low_complexity 1 35 0 262 200 133 0 chr9 22291584 22291674 -119979770 + L1MC1 LINE L1 5174 5275 -871 939 166 0 6 chr9 22291711 22291894 -119979550 + AluJb SINE Alu 144 312 0 4862 118 28 41 chr9 22291894 22292577 -119978867 + L1MC1 LINE L1 5267 6006 -327 1855 162 3 7 chr9 22292577 22292873 -119978571 + AluJb SINE Alu 1 295 -17 4862 118 28 41 chr9 22292873 22293178 -119978266 + L1MC1 LINE L1 6006 6313 -20 268 175 35 0 chr9 22293437 22293494 -119977950 - FLAM SINE Alu -21 112 54 24 32 0 0 chr9 22293503 22293534 -119977910 + AT_rich Low_complexity Low_complexity 1 31 0 242 314 12 17 chr9 22293906 22294012 -119977432 + GA-rich Low_complexity Low_complexity 4 174 0 180 0 0 0 chr9 22294016 22294036 -119977408 + (A)n Simple_repeat Simple_repeat 1 20 0 2123 123 10 0 chr9 22294104 22294404 -119977040 + AluSx SINE Alu 1 303 -9 1610 240 133 52 chr9 22295097 22295923 -119975521 - L1ME3A LINE L1 -24 6146 5254 191 319 167 22 chr9 22296367 22296505 -119974939 - MIR3 SINE MIR -46 162 5 803 258 103 78 chr9 22296878 22297285 -119974159 - Tigger8 DNA MER2_type -99 567 141 1619 193 103 44 chr9 22297285 22297762 -119973682 - MLT1D LTR MaLR 0 505 1 803 258 103 78 chr9 22297762 22297905 -119973539 - Tigger8 DNA MER2_type -525 141 3 526 280 34 23 chr9 22297947 22298122 -119973322 - MER5B DNA MER1_type 0 178 2 606 160 56 24 chr9 22298623 22298748 -119972696 - FLAM_C SINE Alu 0 133 5 1365 156 9 9 chr9 22299601 22299819 -119971625 - AluSx SINE Alu -93 219 2 2099 131 0 3 chr9 22300028 22300325 -119971119 - AluSx SINE Alu -16 296 1 22 0 0 0 chr9 22300647 22300669 -119970775 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 22300759 22300803 -119970641 + AT_rich Low_complexity Low_complexity 1 44 0 331 244 124 62 chr9 22301144 22301418 -119970026 - L1ME4a LINE L1 -15 6106 5816 24 32 0 0 chr9 22302252 22302283 -119969161 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 22302288 22302312 -119969132 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2941 128 47 4 chr9 22302348 22302863 -119968581 + L1MA9 LINE L1 5545 6081 -231 439 175 78 0 chr9 22302865 22302968 -119968476 + L1MA9 LINE L1 6180 6290 -22 2135 109 7 13 chr9 22303496 22303833 -119967611 + AluY SINE Alu 1 311 0 2006 119 14 57 chr9 22303920 22304272 -119967172 + MER1B DNA MER1_type 1 337 0 306 0 0 0 chr9 22305063 22305097 -119966347 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 789 232 127 9 chr9 22307091 22307311 -119964133 - MIR SINE MIR -3 259 14 274 136 0 0 chr9 22307437 22307481 -119963963 - Charlie5 DNA MER1_type -304 2308 2265 21 36 0 0 chr9 22307547 22307575 -119963869 + AT_rich Low_complexity Low_complexity 1 28 0 11048 132 36 19 chr9 22307666 22308241 -119963203 - Tigger1 DNA MER2_type 0 2418 1854 1741 136 176 24 chr9 22308241 22308610 -119962834 - MSTA LTR MaLR -3 425 1 9238 124 23 59 chr9 22308610 22310248 -119961196 - MSTA-int LTR MaLR 0 1580 3 1617 175 73 17 chr9 22310250 22310605 -119960839 - THE1C LTR MaLR 0 375 1 11048 132 36 19 chr9 22310605 22311129 -119960315 - Tigger1 DNA MER2_type -564 1854 1341 2722 20 0 0 chr9 22311129 22311428 -119960016 - AluYb8 SINE Alu -7 311 13 11048 132 36 19 chr9 22311428 22312272 -119959172 - Tigger1 DNA MER2_type -1077 1341 436 470 175 21 10 chr9 22312281 22312378 -119959066 - Tigger1 DNA MER2_type -2134 284 187 776 266 0 0 chr9 22312378 22312555 -119958889 + FRAM SINE Alu 1 169 -7 545 115 9 26 chr9 22312555 22312668 -119958776 + (GGA)n Simple_repeat Simple_repeat 1 111 0 1000 190 0 0 chr9 22312668 22312847 -119958597 - Tigger1 DNA MER2_type -2232 186 8 1274 257 125 11 chr9 22312863 22313310 -119958134 + L1MB2 LINE L1 4758 5255 -891 3489 190 30 42 chr9 22313314 22313696 -119957748 + L1MB2 LINE L1 5330 5715 -456 1603 173 19 38 chr9 22313696 22314014 -119957430 + AluJo SINE Alu 1 312 0 3489 190 30 42 chr9 22314014 22314483 -119956961 + L1MB2 LINE L1 5715 6171 0 1299 208 32 49 chr9 22314627 22314935 -119956509 + AluJo SINE Alu 1 303 -9 23 0 0 0 chr9 22315173 22315196 -119956248 + AT_rich Low_complexity Low_complexity 1 23 0 1309 195 0 27 chr9 22315196 22315453 -119955991 + AluJo SINE Alu 50 299 -13 2073 112 6 56 chr9 22315476 22315833 -119955611 + LTR32 LTR ERVL 14 352 -119 880 162 13 0 chr9 22315832 22315986 -119955458 + LTR32 LTR ERVL 316 471 0 * 906 159 0 0 chr9 22316092 22316224 -119955220 - AluJb SINE Alu -180 132 1 2340 93 3 3 chr9 22316252 22316553 -119954891 + AluSq SINE Alu 1 301 -12 1541 224 0 3 chr9 22316568 22316862 -119954582 + AluJo SINE Alu 10 302 -10 864 146 12 12 chr9 22316865 22317029 -119954415 - Charlie5 DNA MER1_type -210 2402 2239 494 186 41 0 chr9 22317043 22317140 -119954304 - Charlie5 DNA MER1_type -2507 105 5 1662 168 24 3 chr9 22317714 22318005 -119953439 - AluJb SINE Alu -15 297 1 749 239 52 20 chr9 22318325 22318576 -119952868 - MIR SINE MIR 0 262 4 1352 176 134 8 chr9 22319328 22319589 -119951855 - AluJb SINE Alu -18 294 1 1814 169 3 29 chr9 22319640 22319954 -119951490 - AluJo SINE Alu -6 306 1 228 67 0 0 chr9 22321399 22321429 -119950015 + (TTG)n Simple_repeat Simple_repeat 1 30 0 221 250 156 0 chr9 22322291 22322355 -119949089 - L2 LINE L2 -37 3276 3203 21 36 0 0 chr9 22323866 22323894 -119947550 + AT_rich Low_complexity Low_complexity 1 28 0 669 153 76 17 chr9 22324217 22324335 -119947109 - FLAM_C SINE Alu -6 127 3 568 235 126 36 chr9 22324715 22324992 -119946452 + Charlie2 DNA MER1_type 1884 2185 -677 686 221 117 53 chr9 22325055 22325293 -119946151 + Charlie2 DNA MER1_type 2268 2489 -373 2044 117 0 0 chr9 22325293 22325597 -119945847 + AluSg SINE Alu 1 304 0 686 221 117 53 chr9 22325597 22325828 -119945616 + Charlie2 DNA MER1_type 2489 2768 -94 712 257 72 50 chr9 22326139 22326361 -119945083 + MIR SINE MIR 2 228 -34 835 130 22 58 chr9 22327193 22327331 -119944113 - AluSq/x SINE Alu -180 133 1 487 266 65 19 chr9 22327471 22327625 -119943819 + MER5A DNA MER1_type 29 189 0 21 0 0 0 chr9 22328041 22328062 -119943382 + AT_rich Low_complexity Low_complexity 1 21 0 292 309 24 71 chr9 22328757 22328925 -119942519 + MIR3 SINE MIR 16 175 -33 368 340 95 57 chr9 22329310 22329625 -119941819 - L2 LINE L2 -2 3270 2944 25 31 0 0 chr9 22329634 22329666 -119941778 + AT_rich Low_complexity Low_complexity 1 32 0 989 134 17 6 chr9 22329666 22329845 -119941599 - L1MA4A LINE L1 -1 6302 6122 22 56 0 0 chr9 22330921 22330957 -119940487 + AT_rich Low_complexity Low_complexity 1 36 0 984 111 0 0 chr9 22334801 22334981 -119936463 + (TA)n Simple_repeat Simple_repeat 1 180 0 917 123 0 0 chr9 22335047 22335169 -119936275 + AluSq/x SINE Alu 1 122 -191 340 374 72 0 chr9 22335432 22335571 -119935873 + L2 LINE L2 3122 3270 -2 216 0 0 0 chr9 22336195 22336219 -119935225 + (A)n Simple_repeat Simple_repeat 1 24 0 643 181 34 88 chr9 22337034 22337238 -119934206 + L1MC5 LINE L1 7725 7917 -44 2233 132 30 50 chr9 22338294 22338509 -119932935 + L1MA7 LINE L1 5116 5334 -957 1931 62 0 0 chr9 22338509 22338751 -119932693 - L1PA7 LINE L1 -6 6148 5907 2233 132 30 50 chr9 22338751 22339551 -119931893 + L1MA7 LINE L1 5334 6276 -15 23 24 0 24 chr9 22339551 22339574 -119931870 + AT_rich Low_complexity Low_complexity 1 24 -16 2039 139 0 0 chr9 22339574 22339862 -119931582 + AluSx SINE Alu 1 288 -24 23 24 0 24 chr9 22339862 22339879 -119931565 + AT_rich Low_complexity Low_complexity 24 40 0 1846 167 13 3 chr9 22340189 22340542 -119930902 - AluJb SINE Alu 0 356 1 368 218 81 40 chr9 22340846 22340970 -119930474 - MIR SINE MIR -43 219 91 728 230 43 59 chr9 22341094 22341281 -119930163 - MER5A DNA MER1_type -5 184 1 5855 137 25 21 chr9 22341451 22342430 -119929014 - Tigger1 DNA MER2_type 0 2418 1436 396 90 0 45 chr9 22342433 22342500 -119928944 + Tigger1 DNA MER2_type 2175 2238 -180 8927 118 56 10 chr9 22342559 22343922 -119927522 - Tigger1 DNA MER2_type -942 1476 44 683 225 0 0 chr9 22343922 22344042 -119927402 + FLAM_A SINE Alu 1 120 -13 8927 118 56 10 chr9 22344042 22344089 -119927355 - Tigger1 DNA MER2_type -2374 44 1 752 185 15 0 chr9 22345458 22345588 -119925856 + FLAM_C SINE Alu 1 132 -1 601 202 0 8 chr9 22345643 22345767 -119925677 + Charlie5 DNA MER1_type 1 123 -2489 937 186 54 18 chr9 22345772 22346077 -119925367 + Charlie5 DNA MER1_type 2245 2624 0 1230 183 29 77 chr9 22346142 22346454 -119924990 + AluJo SINE Alu 1 297 -15 33 0 0 0 chr9 22349041 22349074 -119922370 + AT_rich Low_complexity Low_complexity 1 33 0 5478 149 27 33 chr9 22349108 22349600 -119921844 - L1MC2 LINE L1 -1 6343 5850 2526 95 11 20 chr9 22349600 22349958 -119921486 - THE1A LTR MaLR 0 355 1 11229 92 23 3 chr9 22349958 22351506 -119919938 - THE1A-int LTR MaLR 0 1580 1 2543 91 3 22 chr9 22351506 22351868 -119919576 - THE1A LTR MaLR 0 355 1 5478 149 27 33 chr9 22351868 22352118 -119919326 - L1MC2 LINE L1 -492 5852 5602 932 194 52 157 chr9 22352118 22352520 -119918924 - MLT1A1 LTR MaLR -4 361 2 5478 149 27 33 chr9 22352520 22352782 -119918662 - L1MC2 LINE L1 -742 5602 5342 210 211 53 79 chr9 22352813 22352889 -119918555 + MER5A DNA MER1_type 14 87 -102 1619 191 13 20 chr9 22353098 22353396 -119918048 + AluJo SINE Alu 1 296 -16 231 319 22 95 chr9 22354361 22354534 -119916910 - MIR3 SINE MIR -47 161 33 3394 24 0 2 chr9 22354679 22355101 -119916343 - L1P LINE L1 -768 5378 4958 21 0 0 0 chr9 22356763 22356784 -119914660 + AT_rich Low_complexity Low_complexity 1 21 0 1065 216 4 4 chr9 22356858 22357099 -119914345 + L1MB3 LINE L1 5941 6181 -2 2090 211 94 55 chr9 22358844 22359442 -119912002 + MLT1E2 LTR MaLR 3 625 -1 465 188 80 27 chr9 22359476 22359588 -119911856 - MIR SINE MIR -68 194 77 3439 32 0 0 chr9 22360384 22360796 -119910648 - L1P LINE L1 -1558 4588 4177 6729 20 1 0 chr9 22360796 22361575 -119909869 + L1PA3 LINE L1 5372 6155 0 2158 92 0 0 chr9 22361691 22361964 -119909480 - AluSg SINE Alu -15 295 23 1571 148 38 98 chr9 22362307 22362706 -119908738 + THE1C LTR MaLR 1 375 0 1380 218 0 45 chr9 22362715 22363027 -119908417 - AluJo SINE Alu -14 298 1 212 351 33 19 chr9 22363251 22363363 -119908081 - MER5A DNA MER1_type -18 160 48 559 160 43 0 chr9 22363860 22363954 -119907490 + FLAM_A SINE Alu 1 98 -44 27 0 0 0 chr9 22363955 22363982 -119907462 + AT_rich Low_complexity Low_complexity 1 27 0 1870 130 77 64 chr9 22364253 22364630 -119906814 - MLT1B LTR MaLR -8 382 1 6103 99 34 18 chr9 22365258 22365919 -119905525 + MER41B-int LTR ERV1 5020 5702 -244 2214 114 3 3 chr9 22365919 22366218 -119905226 - AluSx SINE Alu -13 299 1 6103 99 34 18 chr9 22366218 22366468 -119904976 + MER41B-int LTR ERV1 5702 5946 0 3622 126 0 18 chr9 22366468 22367025 -119904419 + MER41B LTR ERV1 1 547 -88 1573 181 0 44 chr9 22367053 22367373 -119904071 + AluJb SINE Alu 2 307 -5 31 26 0 0 chr9 22367390 22367428 -119904016 + AT_rich Low_complexity Low_complexity 1 38 0 698 186 83 6 chr9 22367850 22368006 -119903438 + MER3 DNA MER1_type 40 207 -2 2032 117 3 24 chr9 22368385 22368683 -119902761 + AluSx SINE Alu 1 292 -20 1721 173 43 23 chr9 22368746 22369145 -119902299 - L1M4 LINE L1 -1469 4677 4271 224 276 41 41 chr9 22369145 22369243 -119902201 + MIR SINE MIR 141 238 -24 2300 96 0 3 chr9 22371002 22371304 -119900140 + AluSc SINE Alu 1 301 -8 247 273 0 30 chr9 22371605 22371671 -119899773 + MIR3 SINE MIR 12 75 -133 352 227 209 0 chr9 22371678 22371788 -119899656 + MER94 DNA DNA 2 134 0 209 207 57 0 chr9 22371803 22371863 -119899581 + MIR SINE MIR 87 150 -58 213 65 0 0 chr9 22372103 22372134 -119899310 + (A)n Simple_repeat Simple_repeat 1 31 0 349 324 90 0 chr9 22372275 22372386 -119899058 + L2 LINE L2 3150 3270 -2 374 56 0 19 chr9 22374745 22374799 -119896645 + (CA)n Simple_repeat Simple_repeat 2 54 0 26 0 0 0 chr9 22377363 22377389 -119894055 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr9 22379218 22379261 -119892183 + AT_rich Low_complexity Low_complexity 1 43 0 259 259 71 62 chr9 22384182 22384294 -119887150 + MIR3 SINE MIR 75 187 -21 831 306 114 54 chr9 22384574 22385163 -119886281 + L1ME3 LINE L1 5273 5896 -266 663 145 26 0 chr9 22385174 22385291 -119886153 + L1MB7 LINE L1 6046 6165 -19 22 0 0 0 chr9 22385575 22385597 -119885847 + AT_rich Low_complexity Low_complexity 1 22 0 519 294 25 0 chr9 22385776 22385977 -119885467 + L1ME LINE L1 5540 5745 -376 2252 111 3 0 chr9 22386100 22386407 -119885037 + AluSq SINE Alu 1 308 -5 231 61 0 0 chr9 22386407 22386440 -119885004 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 201 102 0 122 chr9 22386443 22386492 -119884952 + L2 LINE L2 3271 3313 0 1551 178 3 60 chr9 22387048 22387379 -119884065 + AluJb SINE Alu 1 312 0 355 195 138 98 chr9 22387551 22387618 -119883826 - MIR SINE MIR 0 262 199 1513 209 79 47 chr9 22387618 22388125 -119883319 + Charlie1b DNA MER1_type 1 523 0 355 195 138 98 chr9 22388125 22388231 -119883213 - MIR SINE MIR -63 199 82 309 246 72 94 chr9 22388708 22388985 -119882459 - L1ME LINE L1 -379 5787 5517 324 0 0 0 chr9 22392236 22392272 -119879172 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 77 0 0 chr9 22392453 22392505 -119878939 + GC_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 22392523 22392552 -119878892 + GC_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr9 22392991 22393036 -119878408 + GC_rich Low_complexity Low_complexity 1 45 0 201 121 0 0 chr9 22393882 22393915 -119877529 + (TG)n Simple_repeat Simple_repeat 1 33 0 262 287 0 21 chr9 22393956 22393996 -119877448 + G-rich Low_complexity Low_complexity 1 40 -52 234 116 0 0 chr9 22393996 22394039 -119877405 + (TG)n Simple_repeat Simple_repeat 1 43 0 262 287 0 21 chr9 22394039 22394092 -119877352 + G-rich Low_complexity Low_complexity 40 92 0 195 42 0 0 chr9 22394389 22394413 -119877031 + (CTCG)n Simple_repeat Simple_repeat 3 26 0 189 0 0 0 chr9 22394438 22394459 -119876985 + (CAG)n Simple_repeat Simple_repeat 2 22 0 370 294 13 33 chr9 22395843 22395996 -119875448 + CT-rich Low_complexity Low_complexity 1 150 0 215 214 24 0 chr9 22397484 22397526 -119873918 + (CCA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr9 22399074 22399096 -119872348 + AT_rich Low_complexity Low_complexity 1 22 0 2400 95 0 0 chr9 22399204 22399499 -119871945 + AluSc SINE Alu 1 295 -14 1724 229 77 105 chr9 22400586 22401597 -119869847 + L1MC4 LINE L1 6955 7937 -105 1642 181 3 29 chr9 22401632 22401942 -119869502 - AluJo SINE Alu -10 302 1 215 31 31 0 chr9 22402018 22402050 -119869394 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 180 111 0 0 chr9 22402170 22402197 -119869247 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 718 150 0 0 chr9 22404059 22404172 -119867272 + FLAM_A SINE Alu 25 137 -5 377 287 51 46 chr9 22405633 22405870 -119865574 + MER102a DNA MER1_type 73 310 -20 969 197 31 9 chr9 22405992 22406220 -119865224 + MER58B DNA MER1_type 71 303 -38 2361 145 86 2 chr9 22406232 22406674 -119864770 - MER31A LTR ERV1 -6 479 1 859 171 75 4 chr9 22406717 22406945 -119864499 - Charlie5 DNA MER1_type -27 2585 2342 469 186 44 9 chr9 22406946 22407059 -119864385 + MER65B LTR ERV1 1 117 -414 247 220 74 44 chr9 22407354 22407444 -119864000 - MER33 DNA MER1_type -248 76 1 326 282 43 0 chr9 22408526 22408643 -119862801 - MIR SINE MIR -13 249 128 334 204 41 31 chr9 22408658 22408756 -119862688 - MER81 DNA DNA -15 99 1 189 256 0 0 chr9 22408758 22408801 -119862643 - MIR SINE MIR -203 59 17 225 0 0 0 chr9 22409740 22409765 -119861679 + (A)n Simple_repeat Simple_repeat 1 25 0 199 292 0 0 chr9 22410144 22410192 -119861252 - L2 LINE L2 -555 2759 2712 1619 180 16 47 chr9 22410386 22410739 -119860705 + AluJo SINE Alu 1 312 0 1262 152 14 24 chr9 22411068 22411278 -119860166 - AluJo SINE Alu -21 291 84 213 39 0 0 chr9 22411283 22411309 -119860135 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1825 172 0 0 chr9 22411312 22411591 -119859853 - AluJb SINE Alu -33 279 1 311 261 65 80 chr9 22411704 22411842 -119859602 - L2 LINE L2 0 3313 3178 837 256 70 39 chr9 22411962 22412001 -119859443 + MLT1G1 LTR MaLR 1 37 -558 2269 103 0 13 chr9 22412001 22412313 -119859131 - AluSx SINE Alu -4 308 1 837 256 70 39 chr9 22412313 22412778 -119858666 + MLT1G1 LTR MaLR 37 593 -2 321 302 67 20 chr9 22412788 22413035 -119858409 + MLT1L LTR MaLR 100 350 -161 2514 251 20 24 chr9 22413035 22413799 -119857645 + L1ME2 LINE L1 5388 6148 -16 378 175 8 75 chr9 22414319 22414439 -119857005 + L1ME3 LINE L1 6050 6161 -1 278 342 130 9 chr9 22414480 22414711 -119856733 - L2 LINE L2 -751 2563 2305 181 400 11 0 chr9 22414772 22414867 -119856577 - L2 LINE L2 -1007 2307 2212 519 312 144 11 chr9 22414890 22415252 -119856192 + MLT1J LTR MaLR 72 481 -30 1611 166 98 26 chr9 22415569 22416092 -119855352 + MLT2A2 LTR ERVL 1 554 0 415 287 82 32 chr9 22416600 22416879 -119854565 - L1ME LINE L1 -478 5643 5351 342 301 68 44 chr9 22416894 22417143 -119854301 - L1ME LINE L1 -841 5305 5051 204 250 0 0 chr9 22417699 22417747 -119853697 + T-rich Low_complexity Low_complexity 1 48 0 532 280 24 16 chr9 22417753 22418003 -119853441 - L1ME LINE L1 -1494 4652 4401 325 270 11 101 chr9 22418268 22418356 -119853088 - MLT1K LTR MaLR -286 302 236 2143 137 3 13 chr9 22418356 22418670 -119852774 - AluSx SINE Alu -1 311 1 325 270 11 101 chr9 22418670 22418759 -119852685 - MLT1K LTR MaLR -352 236 141 419 365 38 22 chr9 22418822 22419222 -119852222 + L2 LINE L2 1862 2267 -1047 331 324 93 18 chr9 22419693 22420196 -119851248 + L1MC4a LINE L1 3997 4537 -1609 427 324 86 59 chr9 22420358 22420846 -119850598 + L1MC4a LINE L1 4799 5299 -847 2170 110 0 3 chr9 22420852 22421134 -119850310 + AluSq SINE Alu 1 281 -32 827 68 17 0 chr9 22421134 22421252 -119850192 + (GAAA)n Simple_repeat Simple_repeat 2 121 0 628 277 253 4 chr9 22421252 22421714 -119849730 + L1MC4a LINE L1 5367 5943 -1865 22 0 0 0 chr9 22421887 22421909 -119849535 + AT_rich Low_complexity Low_complexity 1 22 0 642 179 0 0 chr9 22422353 22422508 -119848936 - AluJ SINE Alu 0 331 177 757 259 16 5 chr9 22422527 22422716 -119848728 - AluJ SINE Alu -121 191 1 449 132 0 0 chr9 22422879 22422947 -119848497 + AluS SINE Alu 233 300 -10 266 258 0 15 chr9 22423007 22423073 -119848371 + MER91B DNA MER1_type 18 82 -108 611 210 11 16 chr9 22423090 22423224 -119848220 - MER5A DNA MER1_type -46 132 9 293 0 27 0 chr9 22423327 22423364 -119848080 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 710 185 0 34 chr9 22423370 22423489 -119847955 - FLAM_A SINE Alu -18 115 1 208 270 40 0 chr9 22423522 22423596 -119847848 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 1295 209 64 32 chr9 22424118 22424401 -119847043 - AluJo SINE Alu -20 292 1 216 90 39 39 chr9 22424424 22424502 -119846942 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 247 176 15 59 chr9 22424503 22424639 -119846805 + (TTA)n Simple_repeat Simple_repeat 2 131 0 11242 126 83 35 chr9 22425000 22425596 -119845848 - Tigger1 DNA MER2_type -1 2417 1851 2353 81 0 0 chr9 22425596 22425891 -119845553 - AluY SINE Alu -6 305 11 11242 126 83 35 chr9 22425891 22427413 -119844031 - Tigger1 DNA MER2_type -567 1851 198 23096 56 41 18 chr9 22427416 22430635 -119840809 - L1P LINE L1 -2851 3295 3 738 102 9 0 chr9 22430670 22430778 -119840666 + MLT1B LTR MaLR 3 111 -279 1611 149 35 4 chr9 22430782 22431043 -119840401 + AluSx SINE Alu 5 273 -39 1073 154 12 0 chr9 22431086 22431255 -119840189 + AluSg/x SINE Alu 128 298 -12 969 202 0 66 chr9 22431309 22431552 -119839892 + MLT1B LTR MaLR 161 387 -3 519 352 116 21 chr9 22431820 22432252 -119839192 - L2 LINE L2 -620 2694 2222 733 256 91 14 chr9 22432282 22432501 -119838943 - MIR SINE MIR -10 252 17 183 335 162 49 chr9 22432442 22432887 -119838557 - L2 LINE L2 -1005 2309 1815 * 216 196 0 20 chr9 22432915 22432966 -119838478 + GA-rich Low_complexity Low_complexity 2 51 0 789 233 207 16 chr9 22433767 22434144 -119837300 + L1MC4a LINE L1 5542 5990 -1818 249 108 0 0 chr9 22434246 22434283 -119837161 + (TG)n Simple_repeat Simple_repeat 2 38 0 306 280 37 9 chr9 22434300 22434407 -119837037 + LTR16A LTR ERVL 1 110 -340 23 0 0 0 chr9 22434553 22434576 -119836868 + AT_rich Low_complexity Low_complexity 1 23 0 348 24 0 0 chr9 22434652 22434693 -119836751 + (CA)n Simple_repeat Simple_repeat 2 42 0 26 50 0 0 chr9 22435384 22435424 -119836020 + AT_rich Low_complexity Low_complexity 1 40 0 847 131 0 29 chr9 22435786 22435956 -119835488 - FLAM_C SINE Alu 0 166 1 464 198 9 9 chr9 22435964 22436080 -119835364 + L1MA10 LINE L1 6212 6327 -7 1113 81 0 0 chr9 22436925 22437061 -119834383 + AluSq/x SINE Alu 1 136 -177 25 0 0 0 chr9 22437061 22437086 -119834358 + AT_rich Low_complexity Low_complexity 1 25 0 1263 102 0 0 chr9 22437086 22437252 -119834192 - AluSg/x SINE Alu -27 283 118 1741 170 17 3 chr9 22437466 22437766 -119833678 + AluJb SINE Alu 1 304 -8 278 240 143 97 chr9 22440089 22440285 -119831159 + LTR33 LTR ERVL 16 220 -301 408 160 123 19 chr9 22440322 22440428 -119831016 + MER96 DNA MER1_type? 15 131 -44 501 239 17 91 chr9 22440631 22440675 -119830769 - MER45A DNA AcHobo -1411 170 124 2182 114 3 3 chr9 22440675 22440972 -119830472 + AluSx SINE Alu 7 303 -9 501 239 17 91 chr9 22440972 22441103 -119830341 - MER45A DNA AcHobo -1457 124 8 457 224 50 153 chr9 22441398 22441510 -119829934 - MIR SINE MIR -38 224 149 1503 151 57 78 chr9 22441510 22441893 -119829551 - THE1C LTR MaLR 0 375 1 457 224 50 153 chr9 22441893 22442021 -119829423 - MIR SINE MIR -113 149 9 794 235 66 10 chr9 22443012 22443208 -119828236 - MER63A DNA MER1_type -3 207 1 2067 116 0 0 chr9 22443621 22443927 -119827517 - AluSx SINE Alu 0 306 1 25 0 0 0 chr9 22443927 22443952 -119827492 + AT_rich Low_complexity Low_complexity 1 25 0 1757 184 54 5 chr9 22444361 22444748 -119826696 - L1M4 LINE L1 -443 5741 5336 30 52 0 39 chr9 22444748 22444782 -119826662 + AT_rich Low_complexity Low_complexity 1 35 -39 1422 139 117 30 chr9 22444782 22445048 -119826396 - AluJb SINE Alu -23 289 1 30 52 0 39 chr9 22445048 22445090 -119826354 + AT_rich Low_complexity Low_complexity 35 74 0 733 196 39 39 chr9 22445229 22445433 -119826011 - MER63B DNA MER1_type -1 434 231 791 176 126 50 chr9 22445533 22445772 -119825672 - MER63B DNA MER1_type -179 257 1 228 329 14 0 chr9 22446034 22446104 -119825340 + L2 LINE L2 3200 3270 -2 243 241 0 0 chr9 22446421 22446479 -119824965 - MLT1J LTR MaLR -344 167 110 313 314 0 0 chr9 22446523 22446609 -119824835 + Cheshire DNA MER1_type 2 87 -2333 7339 172 34 1 chr9 22446618 22448042 -119823402 + Cheshire DNA MER1_type 399 1869 -551 4147 163 60 3 chr9 22448042 22449268 -119822176 + L1M2 LINE L1 4484 5779 -533 415 194 226 43 chr9 22449647 22449833 -119821611 + MLT1H LTR MaLR 334 535 -14 449 181 35 17 chr9 22450134 22450250 -119821194 + LTR33 LTR ERVL 402 519 -2 270 274 26 100 chr9 22450250 22450420 -119821024 - L2 LINE L2 -262 3051 2854 492 18 0 0 chr9 22450420 22450477 -119820967 + (TG)n Simple_repeat Simple_repeat 2 58 0 270 274 26 100 chr9 22450477 22450583 -119820861 - L2 LINE L2 -459 2854 2742 277 188 0 0 chr9 22450700 22450748 -119820696 - L2 LINE L2 -525 2789 2742 2202 95 11 0 chr9 22451750 22452033 -119819411 + AluSc SINE Alu 3 288 -21 22 0 0 0 chr9 22452033 22452055 -119819389 + AT_rich Low_complexity Low_complexity 1 22 0 238 188 0 21 chr9 22452090 22452138 -119819306 + MIR SINE MIR 16 62 -146 1453 169 3 110 chr9 22452156 22452493 -119818951 + AluJo SINE Alu 2 302 0 703 125 22 66 chr9 22452730 22452866 -119818578 - FLAM_C SINE Alu -3 130 1 199 273 23 0 chr9 22453021 22453065 -119818379 + L3b LINE CR1 1530 1574 -9 226 302 93 12 chr9 22453124 22453210 -119818234 + L2 LINE L2 3202 3294 -19 1611 192 77 0 chr9 22453403 22453741 -119817703 + MLT1A1 LTR MaLR 1 364 -1 709 288 45 10 chr9 22453815 22454043 -119817401 + MIR SINE MIR 16 245 -17 183 42 0 0 chr9 22454240 22454264 -119817180 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1576 101 60 38 chr9 22454268 22454535 -119816909 - AluSg SINE Alu -37 273 1 298 321 73 0 chr9 22454674 22454783 -119816661 + MER5B DNA MER1_type 15 131 -47 331 245 104 110 chr9 22455578 22455984 -119815460 - L1M2 LINE L1 -5896 953 449 181 258 76 15 chr9 22456757 22456823 -119814621 + MIR3 SINE MIR 112 181 -27 1908 96 8 0 chr9 22457631 22457881 -119813563 - AluSx SINE Alu -14 298 47 289 322 62 58 chr9 22459353 22459561 -119811883 - L2 LINE L2 -208 3064 2856 602 296 209 14 chr9 22459749 22460246 -119811198 - L2 LINE L2 -742 2572 1979 417 375 104 14 chr9 22460310 22460734 -119810710 - L2 LINE L2 -2085 1229 768 237 384 0 0 chr9 22461018 22461104 -119810340 - L2 LINE L2 -2943 371 286 246 286 79 21 chr9 22461465 22461605 -119809839 + MER117 DNA MER1_type 9 156 -41 2691 237 75 84 chr9 22461665 22462022 -119809422 + L2 LINE L2 1533 1892 -1422 1567 188 20 3 chr9 22462022 22462314 -119809130 - AluJo SINE Alu -15 297 1 2691 237 75 84 chr9 22462314 22462413 -119809031 + L2 LINE L2 1892 1990 -1324 2191 127 3 0 chr9 22462413 22462712 -119808732 - AluSx SINE Alu -12 300 1 2691 237 75 84 chr9 22462712 22462948 -119808496 + L2 LINE L2 1990 2227 -1087 2339 89 3 0 chr9 22462948 22463250 -119808194 - AluY SINE Alu -8 303 1 1924 97 90 0 chr9 22463252 22463520 -119807924 - AluSx SINE Alu -20 292 1 2691 237 75 84 chr9 22463520 22463927 -119807517 + L2 LINE L2 2228 2627 -687 616 262 70 49 chr9 22463927 22464413 -119807031 - MLT1H LTR MaLR 0 549 14 1389 277 92 14 chr9 22464413 22465060 -119806384 + L2 LINE L2 2614 3313 0 234 0 0 0 chr9 22465175 22465201 -119806243 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1992 143 0 0 chr9 22465201 22465481 -119805963 - AluSx SINE Alu -32 280 1 24 32 0 0 chr9 22466086 22466117 -119805327 + AT_rich Low_complexity Low_complexity 1 31 0 498 254 30 71 chr9 22466280 22466686 -119804758 - L1MC5 LINE L1 -284 7677 7289 300 291 73 20 chr9 22466691 22466842 -119804602 - L1MC4a LINE L1 -431 7377 7219 1308 270 81 83 chr9 22467541 22467704 -119803740 + L2 LINE L2 2396 2558 -755 1233 103 46 73 chr9 22467704 22467935 -119803509 + L1MA9 LINE L1 6059 6284 -28 867 189 137 94 chr9 22467935 22467992 -119803452 + MLT1A1 LTR MaLR 1 54 -311 1779 161 7 4 chr9 22467992 22468299 -119803145 + AluJo SINE Alu 1 308 0 867 189 137 94 chr9 22468299 22468589 -119802855 + MLT1A1 LTR MaLR 54 365 0 1233 103 46 73 chr9 22468589 22468618 -119802826 + L1MA9 LINE L1 6284 6312 0 1308 270 81 83 chr9 22468618 22469096 -119802348 + L2 LINE L2 2558 3052 -261 222 37 0 0 chr9 22469836 22469863 -119801581 + (CA)n Simple_repeat Simple_repeat 2 28 0 1606 155 100 4 chr9 22469873 22470144 -119801300 - AluJo SINE Alu -15 297 1 2384 82 13 3 chr9 22470932 22471238 -119800206 + AluY SINE Alu 3 311 0 378 0 0 0 chr9 22471244 22471286 -119800158 + (TA)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr9 22471611 22471640 -119799804 + AT_rich Low_complexity Low_complexity 1 29 0 198 273 0 0 chr9 22472312 22472356 -119799088 - L2 LINE L2 -8 3305 3262 212 217 87 0 chr9 22472553 22472599 -119798845 - MIR3 SINE MIR -21 187 138 570 294 104 33 chr9 22472830 22473194 -119798250 + Tigger8 DNA MER2_type 131 520 -146 180 257 27 14 chr9 22473464 22473538 -119797906 - MIR SINE MIR -3 259 185 282 56 0 0 chr9 22473555 22473591 -119797853 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1722 173 0 4 chr9 22473594 22473865 -119797579 - AluJo SINE Alu -33 279 10 660 270 70 42 chr9 22473927 22474168 -119797276 + MIR SINE MIR 13 260 -2 487 281 111 6 chr9 22474154 22474325 -119797119 + MIR SINE MIR 57 245 -17 * 496 156 0 22 chr9 22474407 22474497 -119796947 + AluSg/x SINE Alu 212 299 -10 189 231 15 62 chr9 22474877 22474942 -119796502 - L2 LINE L2 -529 2785 2724 288 106 0 0 chr9 22474958 22475005 -119796439 - L1P4 LINE L1 -424 5739 5693 186 215 51 114 chr9 22475239 22475318 -119796126 - L2 LINE L2 -12 3260 3187 * 217 264 242 11 chr9 22475317 22475408 -119796036 - MIR SINE MIR -62 146 35 975 192 91 0 chr9 22476446 22476654 -119794790 + MIR SINE MIR 30 256 -6 363 272 103 60 chr9 22476664 22476896 -119794548 - L1MC5 LINE L1 -37 7924 7683 1950 174 0 0 chr9 22477395 22477706 -119793738 - AluJo SINE Alu -1 311 1 308 264 92 80 chr9 22478022 22478185 -119793259 + MIR3 SINE MIR 10 174 -34 257 207 61 24 chr9 22478187 22478269 -119793175 - MLT1J1 LTR MaLR 0 446 362 340 302 157 0 chr9 22478451 22478623 -119792821 - MLT1J LTR MaLR -312 199 1 1744 155 132 5 chr9 22478871 22479253 -119792191 - Tigger2 DNA MER2_type 0 2718 1 1765 144 0 45 chr9 22479955 22480268 -119791176 + AluJo SINE Alu 1 299 -13 296 136 0 61 chr9 22480932 22480998 -119790446 + FAM SINE Alu 118 179 0 207 0 0 0 chr9 22481701 22481724 -119789720 + (T)n Simple_repeat Simple_repeat 1 23 0 2209 99 3 3 chr9 22481787 22482080 -119789364 + AluSq SINE Alu 3 295 -18 575 198 159 0 chr9 22482374 22482500 -119788944 + MER58A DNA MER1_type 3 148 0 306 241 23 11 chr9 22483469 22483556 -119787888 + MER103 DNA DNA 2 89 -77 632 256 83 6 chr9 22483568 22483748 -119787696 + L2 LINE L2 2238 2431 -883 976 67 8 0 chr9 22483848 22483968 -119787476 + AluSq/x SINE Alu 1 121 -192 210 91 0 0 chr9 22484409 22484442 -119787002 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 707 185 0 0 chr9 22484445 22484564 -119786880 - FLAM_C SINE Alu -24 119 1 307 311 112 12 chr9 22485070 22485231 -119786213 - MER5B DNA MER1_type -1 177 1 487 196 76 0 chr9 22485266 22485358 -119786086 - MER5A DNA MER1_type -88 101 3 2317 96 3 0 chr9 22485542 22485833 -119785611 - AluSp SINE Alu -21 292 1 206 235 82 94 chr9 22486391 22486476 -119784968 - MIR SINE MIR -153 109 26 3108 40 0 0 chr9 22486972 22487346 -119784098 - L1PA3 LINE L1 -3 6152 5779 7143 28 60 0 chr9 22487346 22488272 -119783172 + L1P LINE L1 4115 5096 -1050 326 352 45 25 chr9 22488605 22488804 -119782640 + L2 LINE L2 2550 2752 -562 269 355 121 45 chr9 22489001 22489421 -119782023 + L2 LINE L2 2805 3256 -16 351 118 0 0 chr9 22489435 22489486 -119781958 + AluSg/x SINE Alu 216 266 -36 670 189 8 16 chr9 22489651 22489773 -119781671 - FLAM_A SINE Alu -11 122 2 379 286 83 12 chr9 22489877 22490018 -119781426 - MIR3 SINE MIR -10 198 42 2260 113 0 0 chr9 22490018 22490320 -119781124 - AluY SINE Alu -9 302 1 379 286 83 12 chr9 22490320 22490346 -119781098 - MIR3 SINE MIR -166 42 19 362 319 25 8 chr9 22491011 22491130 -119780314 + L2 LINE L2 3193 3313 0 25 0 0 0 chr9 22491248 22491273 -119780171 + AT_rich Low_complexity Low_complexity 1 25 0 1076 209 17 0 chr9 22491280 22491515 -119779929 - L1PA16 LINE L1 -15 6151 5913 190 260 106 39 chr9 22491801 22491905 -119779539 - L2 LINE L2 -23 3290 3180 1033 163 0 0 chr9 22491929 22492076 -119779368 + FAM SINE Alu 20 166 -19 281 287 122 63 chr9 22492140 22492377 -119779067 - L2 LINE L2 -218 3054 2804 509 279 54 0 chr9 22492545 22492692 -119778752 + MIR SINE MIR 87 241 -21 2266 86 0 10 chr9 22492865 22493155 -119778289 - AluSc SINE Alu -22 287 1 401 333 60 12 chr9 22494937 22495105 -119776339 - L3 LINE CR1 -2 1575 1400 226 188 0 31 chr9 22495209 22495273 -119776171 + CT-rich Low_complexity Low_complexity 3 64 0 14907 31 0 0 chr9 22495428 22497970 -119773474 - L1PA3 LINE L1 -3 6152 3607 24 0 0 0 chr9 22498045 22498069 -119773375 + AT_rich Low_complexity Low_complexity 1 24 0 1182 198 24 0 chr9 22498897 22499109 -119772335 + MER20 DNA MER1_type 2 218 -1 210 91 0 0 chr9 22500069 22500102 -119771342 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 707 185 0 0 chr9 22500105 22500224 -119771220 - FLAM_C SINE Alu -24 119 1 307 311 112 12 chr9 22500730 22500891 -119770553 - MER5B DNA MER1_type -1 177 1 487 196 76 0 chr9 22500926 22501018 -119770426 - MER5A DNA MER1_type -88 101 3 2317 96 3 0 chr9 22501202 22501493 -119769951 - AluSp SINE Alu -21 292 1 206 235 82 94 chr9 22502051 22502136 -119769308 - MIR SINE MIR -153 109 26 3108 40 0 0 chr9 22502632 22503006 -119768438 - L1PA3 LINE L1 -3 6152 5779 7143 28 60 0 chr9 22503006 22503932 -119767512 + L1P LINE L1 4115 5096 -1050 326 352 45 25 chr9 22504265 22504464 -119766980 + L2 LINE L2 2550 2752 -562 269 355 121 45 chr9 22504661 22505081 -119766363 + L2 LINE L2 2805 3256 -16 351 118 0 0 chr9 22505095 22505146 -119766298 + AluSg/x SINE Alu 214 264 -36 691 180 8 16 chr9 22505311 22505433 -119766011 - FLAM_A SINE Alu -11 122 2 435 259 77 14 chr9 22505532 22505675 -119765769 - MIR3 SINE MIR -5 203 52 2285 109 0 0 chr9 22505682 22505984 -119765460 - AluY SINE Alu -9 302 1 362 319 25 8 chr9 22506675 22506794 -119764650 + L2 LINE L2 3193 3313 0 25 0 0 0 chr9 22506912 22506937 -119764507 + AT_rich Low_complexity Low_complexity 1 25 0 1076 209 17 0 chr9 22506944 22507179 -119764265 - L1PA16 LINE L1 -15 6151 5913 190 260 106 39 chr9 22507465 22507569 -119763875 - L2 LINE L2 -23 3290 3180 1033 163 0 0 chr9 22507593 22507740 -119763704 + FAM SINE Alu 20 166 -19 281 287 122 63 chr9 22507804 22508041 -119763403 - L2 LINE L2 -218 3054 2804 509 279 54 0 chr9 22508209 22508356 -119763088 + MIR SINE MIR 87 241 -21 2266 86 0 10 chr9 22508529 22508819 -119762625 - AluSc SINE Alu -22 287 1 401 333 60 12 chr9 22510601 22510769 -119760675 - L3 LINE CR1 -2 1575 1400 247 172 0 31 chr9 22510873 22510937 -119760507 + CT-rich Low_complexity Low_complexity 3 64 0 8553 27 0 1 chr9 22511092 22512882 -119758562 - L1PA2 LINE L1 -3 6152 4363 25 0 0 0 chr9 22513100 22513125 -119758319 + AT_rich Low_complexity Low_complexity 1 25 0 203 269 74 56 chr9 22513665 22513773 -119757671 - MER5B DNA MER1_type -62 116 7 2598 145 34 0 chr9 22514516 22514930 -119756514 - MSTA LTR MaLR 0 428 1 272 349 81 55 chr9 22515223 22515495 -119755949 - L2 LINE L2 -133 3139 2861 982 226 103 38 chr9 22515699 22515741 -119755703 - MLT1A2 LTR MaLR -32 342 304 2006 142 16 3 chr9 22515741 22516044 -119755400 + AluSx SINE Alu 1 307 -5 982 226 103 38 chr9 22516044 22516320 -119755124 - MLT1A2 LTR MaLR -70 304 3 437 325 183 23 chr9 22516331 22517024 -119754420 - L2 LINE L2 -737 2577 1774 330 214 44 19 chr9 22517129 22517288 -119754156 + (TA)n Simple_repeat Simple_repeat 1 163 0 227 263 211 0 chr9 22517475 22517570 -119753874 - L2 LINE L2 -9 3304 3190 447 253 34 34 chr9 22517572 22517718 -119753726 - MER5A DNA MER1_type -1 188 43 316 225 83 58 chr9 22517766 22517886 -119753558 - L1ME3 LINE L1 -79 6083 5961 1196 198 61 68 chr9 22518079 22518138 -119753306 - L1MC5 LINE L1 -524 7437 7379 2145 147 3 15 chr9 22518138 22518479 -119752965 + MER1B DNA MER1_type 1 337 0 1196 198 61 68 chr9 22518479 22518848 -119752596 - L1MC5 LINE L1 -582 7379 7012 312 205 15 91 chr9 22518849 22518989 -119752455 - L1MC5 LINE L1 -980 7062 6878 237 327 64 73 chr9 22519895 22520005 -119751439 + L2 LINE L2 3141 3249 -23 237 114 57 23 chr9 22520115 22520203 -119751241 + T-rich Low_complexity Low_complexity 2 92 0 180 0 0 0 chr9 22521569 22521589 -119749855 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr9 22521737 22521758 -119749686 + AT_rich Low_complexity Low_complexity 1 21 0 2444 31 41 0 chr9 22522085 22522378 -119749066 + AluY SINE Alu 1 305 -6 249 226 0 0 chr9 22522511 22522573 -119748871 - AluJ/monomer SINE Alu -4 298 237 791 147 21 7 chr9 22522795 22522938 -119748506 + AluSg/x SINE Alu 156 300 -12 565 193 22 67 chr9 22522938 22522988 -119748456 + L2 LINE L2 2433 2484 -830 2284 125 7 0 chr9 22522988 22523293 -119748151 - AluSx SINE Alu -5 307 1 565 193 22 67 chr9 22523293 22523377 -119748067 + L2 LINE L2 2484 2561 -753 1444 284 56 40 chr9 22523414 22523980 -119747464 + L2 LINE L2 2745 3313 0 1238 110 59 59 chr9 22524342 22524578 -119746866 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr9 22524683 22524707 -119746737 + AT_rich Low_complexity Low_complexity 1 24 0 624 74 0 0 chr9 22524867 22524962 -119746482 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 29 0 0 0 chr9 22525738 22525767 -119745677 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr9 22526048 22526091 -119745353 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 22526594 22526621 -119744823 + AT_rich Low_complexity Low_complexity 1 27 0 411 225 209 0 chr9 22526956 22527085 -119744359 + HsTC2 DNA Tc2 1 156 -1742 577 222 18 18 chr9 22527090 22527257 -119744187 + HsTC2 DNA Tc2 1729 1895 -3 380 304 61 0 chr9 22527796 22527944 -119743500 + MIR SINE MIR 94 250 -12 21 71 0 0 chr9 22528285 22528327 -119743117 + AT_rich Low_complexity Low_complexity 1 42 0 2246 112 0 3 chr9 22529340 22529643 -119741801 - AluSx SINE Alu -10 302 1 216 0 0 0 chr9 22530039 22530063 -119741381 + (T)n Simple_repeat Simple_repeat 1 24 0 246 317 134 24 chr9 22531629 22531681 -119739763 - L3b LINE CR1 -265 1318 1273 2188 131 0 0 chr9 22531681 22531979 -119739465 + AluSx SINE Alu 2 299 -13 246 317 134 24 chr9 22531979 22532090 -119739354 - L3b LINE CR1 -310 1273 1137 362 173 13 0 chr9 22532245 22532320 -119739124 + CT-rich Low_complexity Low_complexity 3 78 0 599 224 112 20 chr9 22532320 22532472 -119738972 - FRAM SINE Alu 0 166 1 203 352 57 0 chr9 22532768 22532856 -119738588 + L2 LINE L2 3179 3271 -1 2143 105 0 20 chr9 22533476 22533770 -119737674 + AluSx SINE Alu 6 293 -19 459 227 104 40 chr9 22533919 22534034 -119737410 - L1MC4a LINE L1 -1832 5976 5870 2676 146 14 9 chr9 22534034 22534458 -119736986 - MSTB LTR MaLR 0 426 1 459 227 104 40 chr9 22534458 22534608 -119736836 - L1MC4a LINE L1 -1938 5870 5681 1857 138 3 14 chr9 22535152 22535435 -119736009 + AluSx SINE Alu 1 280 -32 210 37 0 0 chr9 22535435 22535462 -119735982 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 25 0 0 0 chr9 22538398 22538423 -119733021 + AT_rich Low_complexity Low_complexity 1 25 0 2242 129 14 3 chr9 22538465 22538821 -119732623 - MER46B DNA MER2_type -1 235 1 1804 214 23 51 chr9 22539363 22539834 -119731610 - MLT1C LTR MaLR -1 466 9 26 0 0 0 chr9 22540196 22540222 -119731222 + AT_rich Low_complexity Low_complexity 1 26 0 228 330 0 10 chr9 22540292 22540392 -119731052 - MIR SINE MIR -6 256 158 1378 156 48 73 chr9 22540401 22540773 -119730671 - L1MC5 LINE L1 -676 7285 6923 2148 92 3 11 chr9 22541219 22541503 -119729941 + AluSx SINE Alu 1 282 -30 396 0 0 0 chr9 22541506 22541550 -119729894 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2151 107 3 0 chr9 22542029 22542318 -119729126 - AluSp SINE Alu -23 290 1 1108 67 0 27 chr9 22542353 22542503 -119728941 - L1PA10 LINE L1 -11 6157 6012 881 315 114 30 chr9 22542530 22543411 -119728033 - L2 LINE L2 -49 3223 2281 2683 59 0 0 chr9 22543757 22544096 -119727348 - L1PA3 LINE L1 0 6155 5817 1846 167 3 31 chr9 22544121 22544438 -119727006 + AluJo SINE Alu 1 308 -4 377 291 103 18 chr9 22544857 22545046 -119726398 - L1MC4a LINE L1 -460 5661 5650 1721 145 37 4 chr9 22545046 22545315 -119726129 - AluJb SINE Alu -13 299 22 377 291 103 18 chr9 22545315 22545499 -119725945 - L1MC4a LINE L1 -471 5650 5483 212 83 0 28 chr9 22545874 22545910 -119725534 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1465 203 13 29 chr9 22545912 22546222 -119725222 - AluJo SINE Alu -7 305 1 508 150 71 9 chr9 22546249 22546362 -119725082 - L1MB7 LINE L1 -5 6179 6060 24 53 0 0 chr9 22546574 22546612 -119724832 + AT_rich Low_complexity Low_complexity 1 38 0 266 348 30 22 chr9 22547130 22547265 -119724179 - MIR SINE MIR -74 188 53 35 24 0 0 chr9 22547316 22547358 -119724086 + AT_rich Low_complexity Low_complexity 1 42 0 1435 147 43 52 chr9 22549130 22549457 -119721987 - MER33 DNA MER1_type 0 324 1 265 208 111 0 chr9 22549617 22549689 -119721755 + MIR SINE MIR 173 252 -10 2202 118 3 0 chr9 22549720 22550017 -119721427 + AluSq SINE Alu 1 298 -15 21 71 0 0 chr9 22550755 22550797 -119720647 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 22551968 22551989 -119719455 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr9 22552075 22552097 -119719347 + (T)n Simple_repeat Simple_repeat 1 22 0 847 183 70 5 chr9 22552350 22552536 -119718908 - L1MB8 LINE L1 -5 6173 5976 311 271 78 50 chr9 22552548 22552707 -119718737 + MER5B DNA MER1_type 1 173 -16 367 216 223 22 chr9 22552731 22552870 -119718574 - MER5A DNA MER1_type -14 175 9 286 306 194 8 chr9 22552880 22553014 -119718430 + MER5A DNA MER1_type 28 186 -3 505 284 26 37 chr9 22554011 22554201 -119717243 - MER5A DNA MER1_type -1 188 1 239 349 138 0 chr9 22554631 22554740 -119716704 - MER5A DNA MER1_type -65 124 1 553 230 91 30 chr9 22554959 22555124 -119716320 - MER5B DNA MER1_type -3 175 1 694 261 72 0 chr9 22555124 22555319 -119716125 - Charlie8 DNA MER1_type -2208 209 1 1732 134 73 0 chr9 22555512 22555787 -119715657 - AluJb SINE Alu -17 295 1 291 264 186 28 chr9 22556623 22556853 -119714591 - L2 LINE L2 -302 3011 2743 1534 244 258 18 chr9 22556866 22557609 -119713835 - L1MD3 LINE L1 -8 8034 7124 1193 163 93 4 chr9 22557828 22558180 -119713264 - L1MB7 LINE L1 -1 6179 5766 25 31 0 0 chr9 22558591 22558623 -119712821 + AT_rich Low_complexity Low_complexity 1 32 0 375 354 32 32 chr9 22561368 22561526 -119709918 - MIR3 SINE MIR -37 171 14 906 36 0 0 chr9 22561557 22561667 -119709777 - L1PA3 LINE L1 0 6155 6046 1522 103 115 24 chr9 22561768 22562020 -119709424 - AluSg SINE Alu -35 275 1 26 30 0 0 chr9 22562378 22562411 -119709033 + AT_rich Low_complexity Low_complexity 1 33 0 2221 103 0 10 chr9 22562965 22563265 -119708179 + AluSq SINE Alu 1 297 -16 870 200 170 0 chr9 22563564 22563794 -119707650 - L1MB7 LINE L1 0 6184 5916 29 60 0 0 chr9 22564108 22564158 -119707286 + AT_rich Low_complexity Low_complexity 1 50 0 489 114 0 0 chr9 22567084 22567154 -119704290 - AluS SINE Alu -15 294 225 32 26 0 0 chr9 22567198 22567237 -119704207 + AT_rich Low_complexity Low_complexity 1 39 0 546 248 22 93 chr9 22567342 22567620 -119703824 - LTR41 LTR ERVL -1 772 515 758 200 5 46 chr9 22567765 22567960 -119703484 - LTR41 LTR ERVL -586 187 1 189 321 185 0 chr9 22568334 22568415 -119703029 - MIR SINE MIR -10 252 157 224 266 83 18 chr9 22568445 22568554 -119702890 + MIR SINE MIR 70 185 -77 * 554 250 55 30 chr9 22568541 22568705 -119702739 - MIR SINE MIR -14 248 81 3575 171 22 38 chr9 22568719 22569502 -119701942 - L1MB8 LINE L1 0 6178 5409 330 365 48 0 chr9 22569502 22569628 -119701816 - MIR SINE MIR -104 158 27 225 65 0 0 chr9 22570581 22570612 -119700832 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 183 295 209 9 chr9 22571081 22571186 -119700258 - MIR SINE MIR -37 225 100 23 0 0 0 chr9 22571339 22571362 -119700082 + AT_rich Low_complexity Low_complexity 1 23 0 311 278 111 35 chr9 22571492 22571690 -119699754 - L1MC4a LINE L1 -1786 6022 5810 2702 165 39 11 chr9 22571721 22572259 -119699185 + L1MB7 LINE L1 5631 6183 -1 208 269 0 0 chr9 22573487 22573539 -119697905 + T-rich Low_complexity Low_complexity 1 52 0 1968 138 47 0 chr9 22574256 22574552 -119696892 + AluSx SINE Alu 3 312 0 363 23 0 0 chr9 22574983 22575027 -119696417 + (CA)n Simple_repeat Simple_repeat 1 44 0 1041 95 0 50 chr9 22575104 22575283 -119696161 - L1MA5 LINE L1 -1 6299 6130 470 308 103 35 chr9 22578157 22578585 -119692859 + HAL1 LINE L1 1131 1587 -920 21 82 0 0 chr9 22578770 22578819 -119692625 + AT_rich Low_complexity Low_complexity 1 49 0 2497 62 3 0 chr9 22579267 22579571 -119691873 + AluY SINE Alu 1 305 -6 207 0 0 0 chr9 22579583 22579606 -119691838 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 35963 47 5 7 chr9 22579607 22584940 -119686504 - L1PA4 LINE L1 -11 6144 823 605 116 0 0 chr9 22585156 22585242 -119686202 - AluS SINE Alu -222 90 5 22 0 0 0 chr9 22586788 22586810 -119684634 + AT_rich Low_complexity Low_complexity 1 22 0 292 310 93 8 chr9 22590784 22590913 -119680531 + MIR SINE MIR 123 262 0 1485 222 25 1 chr9 22591151 22591482 -119679962 - MER33 DNA MER1_type -1 323 1 1912 151 13 3 chr9 22591532 22591831 -119679613 + AluSx SINE Alu 1 302 -10 249 290 73 19 chr9 22592780 22592978 -119678466 - L1MC/D LINE L1 -237 5884 5716 910 182 0 6 chr9 22593021 22593191 -119678253 + MER3 DNA MER1_type 1 122 -87 365 211 193 0 chr9 22593183 22593297 -119678147 - MER3 DNA MER1_type -87 122 34 * 1255 239 4 0 chr9 22593739 22593986 -119677458 - MER68 LTR ERV1 -4 558 311 297 338 146 26 chr9 22596455 22596606 -119674838 + MIR3 SINE MIR 17 185 -23 3517 166 47 12 chr9 22596625 22597347 -119674097 - L1MB1 LINE L1 0 6168 5422 2078 218 133 53 chr9 22597347 22598108 -119673336 - L1M4 LINE L1 -3348 3034 2335 2117 143 0 6 chr9 22598108 22598422 -119673022 - AluSx SINE Alu 0 312 1 2078 218 133 53 chr9 22598422 22598889 -119672555 - L1M4 LINE L1 -4047 2335 1667 2024 122 9 34 chr9 22598889 22599209 -119672235 - AluSx SINE Alu 0 312 1 2078 218 133 53 chr9 22599209 22599387 -119672057 - L1M4 LINE L1 -4715 1667 1505 22 0 0 0 chr9 22599636 22599658 -119671786 + AT_rich Low_complexity Low_complexity 1 22 0 1176 209 66 80 chr9 22600483 22600833 -119670611 - MER2 DNA MER2_type 0 345 1 1714 157 116 61 chr9 22600964 22601371 -119670073 - L1MB8 LINE L1 -15 6163 5735 * 3378 198 35 16 chr9 22601354 22602787 -119668657 - L1MB7 LINE L1 -232 5952 4498 1679 204 0 0 chr9 22602983 22603277 -119668167 - AluJo SINE Alu -17 295 2 23 0 0 0 chr9 22603529 22603552 -119667892 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr9 22603815 22603854 -119667590 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr9 22604872 22604902 -119666542 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 22605761 22605788 -119665656 + (A)n Simple_repeat Simple_repeat 1 27 0 180 206 0 0 chr9 22606229 22606263 -119665181 + L2 LINE L2 3216 3249 -23 281 281 173 22 chr9 22607618 22607757 -119663687 - MIR SINE MIR -16 246 87 201 239 119 15 chr9 22608417 22608484 -119662960 + MIR SINE MIR 81 154 -108 348 24 0 0 chr9 22608908 22608949 -119662495 + (TG)n Simple_repeat Simple_repeat 2 42 0 1964 185 40 32 chr9 22609859 22610403 -119661041 + MLT2A2 LTR ERVL 1 554 0 2073 164 25 30 chr9 22610784 22611223 -119660221 - L1MB8 LINE L1 0 6178 5742 1605 238 34 49 chr9 22611223 22611258 -119660186 + L1MA9 LINE L1 5749 5783 -529 246 105 0 0 chr9 22611258 22611296 -119660148 + (TG)n Simple_repeat Simple_repeat 2 39 0 1605 238 34 49 chr9 22611296 22611655 -119659789 + L1MA9 LINE L1 5783 6135 -177 1619 163 73 3 chr9 22611655 22611944 -119659500 + AluJo SINE Alu 1 309 -3 1605 238 34 49 chr9 22611944 22612082 -119659362 + L1MA9 LINE L1 6135 6274 -38 1560 163 7 0 chr9 22612086 22612363 -119659081 - L1MB8 LINE L1 -415 5769 5491 5643 93 5 10 chr9 22612393 22613188 -119658256 - L1PA10 LINE L1 -4 6164 5374 869 179 22 22 chr9 22613162 22613346 -119658098 - L1MB8 LINE L1 -672 5502 5319 * 375 262 129 74 chr9 22613638 22613840 -119657604 - MIR SINE MIR -13 249 37 1472 201 10 10 chr9 22614437 22614726 -119656718 - AluJo SINE Alu -7 305 17 252 284 102 11 chr9 22615192 22615280 -119656164 - L2 LINE L2 -38 3234 3139 2455 204 62 20 chr9 22615465 22616073 -119655371 - L1MB8 LINE L1 -14 7583 6950 3687 150 128 68 chr9 22616167 22617026 -119654418 - L1MA1 LINE L1 0 6302 5392 480 293 56 30 chr9 22617215 22617413 -119654031 + MER102b DNA MER1_type 125 327 -14 2166 198 104 57 chr9 22617508 22617867 -119653577 + L1ME2 LINE L1 5353 5693 -471 2319 113 44 3 chr9 22617867 22618231 -119653213 + L1PA11 LINE L1 5796 6174 0 2166 198 104 57 chr9 22618231 22618523 -119652921 + L1ME2 LINE L1 5693 6035 -129 1191 183 97 10 chr9 22618523 22618822 -119652622 + MER33 DNA MER1_type 1 315 -9 372 219 8 84 chr9 22618822 22618941 -119652503 + L1ME2 LINE L1 6046 6155 -9 227 340 72 10 chr9 22622472 22622569 -119648875 + MER5A DNA MER1_type 86 188 -1 707 213 104 33 chr9 22622612 22622823 -119648621 + Charlie7 DNA MER1_type 52 277 -2335 183 100 0 0 chr9 22622896 22622926 -119648518 + (TG)n Simple_repeat Simple_repeat 2 31 0 1781 153 10 16 chr9 22623012 22623325 -119648119 - AluJb SINE Alu -1 311 1 971 105 20 7 chr9 22623423 22623575 -119647869 - L1MA3 LINE L1 0 6305 6152 8401 196 43 25 chr9 22623585 22627510 -119643934 - L1MB8 LINE L1 -1154 6411 2500 776 193 17 44 chr9 22627794 22627975 -119643469 + L1M4 LINE L1 5584 5759 -419 217 411 47 0 chr9 22628004 22628111 -119643333 - L2 LINE L2 -1 3271 3160 2399 100 0 0 chr9 22628114 22628425 -119643019 - AluSx SINE Alu -1 311 1 336 282 74 42 chr9 22628988 22629204 -119642240 - L1ME4a LINE L1 -49 6072 5850 216 0 0 0 chr9 22629207 22629231 -119642213 + (TA)n Simple_repeat Simple_repeat 2 25 0 533 260 51 60 chr9 22629235 22629456 -119641988 - L1ME4a LINE L1 -349 5772 5593 381 276 241 17 chr9 22630603 22630777 -119640667 - MIR SINE MIR -18 244 32 1655 174 21 26 chr9 22630821 22631161 -119640283 - L1MB8 LINE L1 -6 6172 5835 24 0 0 0 chr9 22631658 22631682 -119639762 + AT_rich Low_complexity Low_complexity 1 24 0 3252 147 82 15 chr9 22631782 22632389 -119639055 - MER39B LTR ERV1 0 653 6 28 0 0 0 chr9 22632626 22632654 -119638790 + AT_rich Low_complexity Low_complexity 1 28 0 1104 241 108 6 chr9 22633416 22633739 -119637705 + Charlie2 DNA MER1_type 4 359 -2423 1078 198 111 97 chr9 22633763 22634075 -119637369 + Charlie2 DNA MER1_type 2254 2579 -283 336 80 0 0 chr9 22634075 22634125 -119637319 - L1PB4 LINE L1 0 6156 6107 1078 198 111 97 chr9 22634125 22634408 -119637036 + Charlie2 DNA MER1_type 2579 2857 -5 320 336 37 108 chr9 22634531 22634799 -119636645 + L2 LINE L2 3019 3267 -5 452 288 144 12 chr9 22635347 22635507 -119635937 + MER5A DNA MER1_type 9 189 0 1104 225 9 0 chr9 22635558 22635780 -119635664 + MER58A DNA MER1_type 1 224 0 203 211 26 0 chr9 22635834 22635872 -119635572 - L2 LINE L2 -25 3247 3209 382 246 155 7 chr9 22638175 22638317 -119633127 - MIR SINE MIR -98 164 2 23 0 0 0 chr9 22638736 22638759 -119632685 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 22638928 22638956 -119632488 + AT_rich Low_complexity Low_complexity 1 28 0 245 348 11 11 chr9 22639091 22639180 -119632264 - L2 LINE L2 -467 2847 2759 26 50 0 0 chr9 22639187 22639227 -119632217 + AT_rich Low_complexity Low_complexity 1 40 0 13053 162 25 15 chr9 22639227 22642800 -119628644 - L1MA3 LINE L1 -5 6300 2697 2057 130 3 22 chr9 22642857 22643173 -119628271 + AluSq SINE Alu 1 310 -3 417 335 120 5 chr9 22643189 22643389 -119628055 - L1M4c LINE L1 -4874 1510 1288 21 36 0 0 chr9 22643389 22643417 -119628027 + AT_rich Low_complexity Low_complexity 1 28 0 226 0 59 0 chr9 22643459 22643493 -119627951 + (TA)n Simple_repeat Simple_repeat 1 36 0 1467 194 28 22 chr9 22643493 22643849 -119627595 + L1MB8 LINE L1 5815 6172 -6 693 174 154 25 chr9 22643872 22644055 -119627389 - L1MD2 LINE L1 -73 7912 6194 777 169 14 12 chr9 22644055 22644199 -119627245 - THE1B LTR MaLR 0 364 246 1780 132 69 0 chr9 22644286 22644575 -119626869 - AluSx SINE Alu -3 309 1 198 0 0 0 chr9 22646563 22646585 -119624859 + (TTG)n Simple_repeat Simple_repeat 2 23 0 265 323 0 0 chr9 22647276 22647338 -119624106 + L2 LINE L2 3209 3270 -2 22 0 0 0 chr9 22648248 22648270 -119623174 + AT_rich Low_complexity Low_complexity 1 22 0 232 204 23 0 chr9 22648699 22648743 -119622701 - L2 LINE L2 -4 3268 3224 210 305 67 67 chr9 22648742 22648847 -119622597 - MIR SINE MIR -157 105 1 * 219 354 0 0 chr9 22648847 22648912 -119622532 - L2 LINE L2 -91 3181 3117 211 315 163 11 chr9 22650135 22650227 -119621217 - MIR SINE MIR -111 151 46 273 109 0 0 chr9 22650636 22650682 -119620762 + (T)n Simple_repeat Simple_repeat 1 46 0 528 32 0 0 chr9 22651271 22651334 -119620110 + L1P LINE L1 4168 4230 -1916 2536 152 7 14 chr9 22654228 22654648 -119616796 + MER47B DNA MER2_type 1 417 -1 2073 121 0 3 chr9 22654685 22654982 -119616462 + AluSx SINE Alu 1 296 -16 2175 117 3 0 chr9 22655386 22655693 -119615751 + AluSg SINE Alu 1 308 -2 343 204 0 23 chr9 22657539 22657629 -119613815 - MIR SINE MIR -114 94 10 2404 100 0 0 chr9 22657831 22658141 -119613303 - AluSx SINE Alu -2 310 1 1897 208 82 45 chr9 22658168 22658733 -119612711 - L1ME LINE L1 -391 5775 5192 2365 107 0 0 chr9 22658733 22659043 -119612401 - AluSg SINE Alu 0 310 1 1897 208 82 45 chr9 22659043 22659112 -119612332 - L1ME LINE L1 -974 5192 5127 241 199 3 5 chr9 22659190 22659221 -119612223 - L1MA10 LINE L1 0 6334 6304 1980 164 31 19 chr9 22659221 22659581 -119611863 + THE1B LTR MaLR 1 364 0 241 199 3 5 chr9 22659581 22659994 -119611450 - L1MA10 LINE L1 -30 6304 5748 * 3879 242 109 22 chr9 22659992 22661470 -119609974 - L1ME LINE L1 -1084 5062 3457 13337 142 49 17 chr9 22661509 22663633 -119607811 + Tigger1 DNA MER2_type 22 2229 -189 955 196 0 0 chr9 22663633 22663796 -119607648 - FAM SINE Alu -12 163 1 13337 142 49 17 chr9 22663796 22663993 -119607451 + Tigger1 DNA MER2_type 2229 2418 0 6733 215 38 29 chr9 22664302 22667344 -119604100 - L1MC1 LINE L1 -5 6608 3559 7714 219 44 36 chr9 22667382 22670223 -119601221 - L1MC1 LINE L1 -3379 3047 27 186 167 0 0 chr9 22671493 22671529 -119599915 + GA-rich Low_complexity Low_complexity 4 39 0 369 0 0 0 chr9 22671799 22671840 -119599604 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr9 22672406 22672427 -119599017 + AT_rich Low_complexity Low_complexity 1 21 0 189 182 114 91 chr9 22672711 22672799 -119598645 - L2 LINE L2 -20 3293 3204 629 263 26 5 chr9 22673586 22673776 -119597668 - L1ME1 LINE L1 -3 6163 5970 1199 309 43 15 chr9 22673963 22674330 -119597114 + L2 LINE L2 2583 2985 -328 3269 137 29 55 chr9 22674330 22674986 -119596458 - L1MB5 LINE L1 0 6174 5536 1199 309 43 15 chr9 22674986 22675102 -119596342 + L2 LINE L2 2985 3096 -217 21 0 0 0 chr9 22676109 22676130 -119595314 + AT_rich Low_complexity Low_complexity 1 21 0 184 188 0 0 chr9 22676713 22676745 -119594699 + L2 LINE L2 3261 3292 -21 24 0 0 0 chr9 22677368 22677392 -119594052 + AT_rich Low_complexity Low_complexity 1 24 0 308 331 29 6 chr9 22678018 22678190 -119593254 + L2 LINE L2 2214 2389 -925 201 311 108 75 chr9 22678195 22678623 -119592821 + L2 LINE L2 2813 3254 -18 21 36 0 0 chr9 22678683 22678711 -119592733 + AT_rich Low_complexity Low_complexity 1 28 0 280 314 82 8 chr9 22679023 22679145 -119592299 - MER5A DNA MER1_type -50 128 9 183 129 0 0 chr9 22679283 22679314 -119592130 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 291 307 124 15 chr9 22679428 22679565 -119591879 - L2 LINE L2 0 3272 3121 338 296 121 67 chr9 22679768 22680008 -119591436 - MIR SINE MIR 0 262 10 502 232 88 0 chr9 22682266 22682391 -119589053 - MIR SINE MIR -110 152 17 796 243 123 0 chr9 22682466 22682734 -119588710 + L1ME LINE L1 5285 5585 -577 411 21 0 0 chr9 22683749 22683797 -119587647 + (CA)n Simple_repeat Simple_repeat 2 49 0 866 165 0 0 chr9 22684590 22684723 -119586721 + AluJb SINE Alu 1 133 -179 3765 259 126 23 chr9 22684828 22686481 -119584963 - L2 LINE L2 0 3313 1504 350 152 13 76 chr9 22687101 22687180 -119584264 - MLT1A2 LTR MaLR -296 78 5 23 0 0 0 chr9 22687661 22687684 -119583760 + AT_rich Low_complexity Low_complexity 1 23 0 2683 14 0 3 chr9 22689049 22689346 -119582098 + AluYa5 SINE Alu 1 296 -15 9290 38 2 0 chr9 22689674 22691581 -119579863 + L1PA3 LINE L1 4244 6155 0 21 0 0 0 chr9 22691581 22691602 -119579842 + AT_rich Low_complexity Low_complexity 1 21 0 224 242 32 16 chr9 22692145 22692207 -119579237 + C-rich Low_complexity Low_complexity 6 68 0 201 178 0 0 chr9 22692224 22692269 -119579175 + CT-rich Low_complexity Low_complexity 2 46 0 2616 170 21 35 chr9 22692308 22692884 -119578560 - L1MB8 LINE L1 -10 6168 5601 1178 170 174 31 chr9 22695016 22695275 -119576169 + AluSx SINE Alu 1 296 -6 734 185 20 29 chr9 22696631 22696821 -119574623 - L1MC4a LINE L1 -6 7802 7638 2008 159 23 79 chr9 22696880 22697359 -119574085 - Ricksha_c DNA DNA -8 2038 1587 1425 124 20 0 chr9 22697362 22697588 -119573856 + AluSg/x SINE Alu 74 303 0 9544 136 46 6 chr9 22697588 22699101 -119572343 - Ricksha_c DNA DNA -448 1598 25 616 178 17 8 chr9 22699101 22699261 -119572183 - L1ME2 LINE L1 -299 5865 5730 514 269 7 28 chr9 22699786 22699927 -119571517 - LTR33 LTR ERVL 0 521 384 868 295 30 22 chr9 22699992 22700263 -119571181 - LTR33 LTR ERVL -241 280 8 743 330 142 30 chr9 22700812 22701426 -119570018 - L2 LINE L2 -299 3014 2333 1833 260 47 37 chr9 22702815 22703600 -119567844 + L1M4 LINE L1 2378 3170 -2976 855 134 30 8 chr9 22703973 22704107 -119567337 - AluSq SINE Alu -26 287 151 399 124 0 93 chr9 22704261 22704392 -119567052 + L1PA11 LINE L1 6087 6174 0 206 340 0 43 chr9 22704871 22704965 -119566479 - L2 LINE L2 -9 3263 3174 656 275 69 30 chr9 22707701 22707934 -119563510 + MIR SINE MIR 6 247 -15 2366 93 3 0 chr9 22710255 22710567 -119560877 + AluSp SINE Alu 1 313 0 298 229 4 2 chr9 22710587 22710643 -119560801 - MER5B DNA MER1_type -1 177 128 27 62 0 0 chr9 22710651 22710699 -119560745 + AT_rich Low_complexity Low_complexity 1 48 0 250 167 15 15 chr9 22710724 22710790 -119560654 + (TA)n Simple_repeat Simple_repeat 1 66 0 426 297 85 0 chr9 22710791 22710909 -119560535 - MER5B DNA MER1_type -48 130 3 416 306 25 46 chr9 22710915 22711111 -119560333 + MIR3 SINE MIR 16 207 -1 248 370 45 30 chr9 22711081 22711281 -119560163 + MIR SINE MIR 60 262 0 * 21 0 0 0 chr9 22711514 22711535 -119559909 + AT_rich Low_complexity Low_complexity 1 21 0 189 132 0 0 chr9 22712744 22712782 -119558662 + (T)n Simple_repeat Simple_repeat 1 38 0 1176 164 206 21 chr9 22715429 22715667 -119555777 + AluSx SINE Alu 17 298 -14 6160 137 20 26 chr9 22716948 22717308 -119554136 - L1PB1 LINE L1 -1 6150 5790 231 36 0 0 chr9 22717308 22717336 -119554108 + (TG)n Simple_repeat Simple_repeat 2 29 0 6160 137 20 26 chr9 22717336 22718477 -119552967 - L1PB1 LINE L1 -361 5790 4664 1606 224 10 19 chr9 22718469 22718885 -119552559 + L1PB1 LINE L1 4246 4657 -1489 * 2011 141 7 0 chr9 22719141 22719446 -119551998 - AluSq SINE Alu -6 307 1 1112 54 0 0 chr9 22720294 22720424 -119551020 + AluY SINE Alu 1 130 -181 10813 32 7 0 chr9 22720424 22722485 -119548959 + L1PA4 LINE L1 4080 6155 0 331 144 56 11 chr9 22722623 22722713 -119548731 + L1MB3 LINE L1 6087 6180 -3 1417 67 0 26 chr9 22722732 22722927 -119548517 + AluY SINE Alu 119 308 -3 230 136 0 17 chr9 22723452 22723511 -119547933 + (TTTTA)n Simple_repeat Simple_repeat 3 60 0 1968 48 0 8 chr9 22723512 22723760 -119547684 - L1PA5 LINE L1 -1 6153 5908 514 73 0 0 chr9 22723760 22723828 -119547616 - L1PA6 LINE L1 -199 5955 5888 1864 166 7 13 chr9 22724044 22724345 -119547099 - AluJb SINE Alu -12 300 2 441 288 72 68 chr9 22724371 22724607 -119546837 - MIR SINE MIR -6 256 20 22 0 0 0 chr9 22724717 22724739 -119546705 + AT_rich Low_complexity Low_complexity 1 22 0 184 227 167 0 chr9 22725132 22725198 -119546246 + MIR SINE MIR 186 262 0 22 0 0 0 chr9 22725277 22725299 -119546145 + AT_rich Low_complexity Low_complexity 1 22 0 530 243 110 66 chr9 22726423 22726695 -119544749 - L2 LINE L2 -9 3304 3021 315 281 42 21 chr9 22729713 22729809 -119541635 - MIR SINE MIR -131 131 34 221 282 42 14 chr9 22729824 22729835 -119541609 - MIR SINE MIR -56 206 197 399 41 0 0 chr9 22729835 22729884 -119541560 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 221 282 42 14 chr9 22729884 22729943 -119541501 - MIR SINE MIR -65 197 134 350 302 178 25 chr9 22730144 22730346 -119541098 + MIR SINE MIR 7 239 -23 1853 181 35 0 chr9 22731059 22731435 -119540009 + L1MB3 LINE L1 5795 6183 0 227 375 38 50 chr9 22733122 22733282 -119538162 - L2 LINE L2 -5 3267 3110 301 310 51 61 chr9 22733884 22734081 -119537363 - L1ME4a LINE L1 0 6121 5927 191 306 0 0 chr9 22734107 22734156 -119537288 + MIR SINE MIR 123 171 -91 222 286 16 32 chr9 22734552 22734615 -119536829 - L2 LINE L2 0 3272 3211 528 337 22 8 chr9 22734939 22735123 -119536321 - MIR SINE MIR -58 150 3 277 315 47 55 chr9 22735125 22735252 -119536192 - MIR3 SINE MIR -37 171 46 423 163 70 12 chr9 22789342 22789428 -119482016 + MLT1A2 LTR MaLR 284 374 0 466 170 54 0 chr9 22791742 22791854 -119479590 + L1MD3 LINE L1 7878 7995 0 25 31 0 0 chr9 22792061 22792093 -119479351 + AT_rich Low_complexity Low_complexity 1 32 0 306 238 114 9 chr9 22792155 22792260 -119479184 - L1ME4a LINE L1 -52 6069 5954 1409 119 103 0 chr9 22792483 22792744 -119478700 - L1MA7 LINE L1 -6 6285 5998 220 266 144 40 chr9 22793393 22793490 -119477954 - L2 LINE L2 -95 3218 3132 3366 147 21 2 chr9 22793490 22794007 -119477437 - MER1A DNA MER1_type 0 527 1 220 266 144 40 chr9 22794007 22794082 -119477362 - L2 LINE L2 -181 3132 3028 263 333 108 17 chr9 22794221 22794341 -119477103 - MIR SINE MIR -62 146 16 998 181 33 0 chr9 22795188 22795370 -119476074 - MER5A DNA MER1_type 0 189 2 292 244 126 8 chr9 22795586 22795713 -119475731 - L1ME4a LINE L1 -2304 5504 5363 2151 117 0 13 chr9 22795715 22796023 -119475421 + AluSx SINE Alu 1 304 -8 337 236 173 0 chr9 22796029 22796156 -119475288 - L1 LINE L1 -992 5154 5006 2991 187 132 25 chr9 22796160 22797046 -119474398 - L1 LINE L1 -1191 4955 3975 312 197 14 197 chr9 22797091 22797143 -119474301 - MIR SINE MIR -113 149 138 2773 160 46 0 chr9 22797143 22797669 -119473775 + L1MB7 LINE L1 5628 6177 -7 312 197 14 197 chr9 22797669 22797758 -119473686 - MIR SINE MIR -124 138 34 251 254 91 18 chr9 22799047 22799157 -119472287 + L1ME4a LINE L1 5974 6091 -30 307 360 20 30 chr9 22799437 22799637 -119471807 - L2 LINE L2 -246 3026 2829 214 182 45 0 chr9 22800656 22800700 -119470744 + MIR3 SINE MIR 157 202 -6 369 233 142 25 chr9 22801127 22801247 -119470197 - MIR SINE MIR 0 262 129 436 219 171 8 chr9 22802069 22802190 -119469254 - L2 LINE L2 0 3313 3173 498 234 113 101 chr9 22802190 22802447 -119468997 + MIR SINE MIR 3 262 0 12984 45 10 5 chr9 22803923 22806318 -119465126 + L1PA5 LINE L1 3750 6153 -1 2382 73 0 10 chr9 22806509 22806809 -119464635 - AluSc SINE Alu -12 297 1 241 300 14 0 chr9 22808307 22808377 -119463067 - L2 LINE L2 0 3272 3202 319 353 25 17 chr9 22808828 22808947 -119462497 - MIR SINE MIR -64 144 25 201 297 27 40 chr9 22810443 22810517 -119460927 - MIR SINE MIR -79 183 111 2339 109 0 0 chr9 22810787 22811098 -119460346 + AluSq SINE Alu 1 311 -2 2258 161 0 43 chr9 22812530 22812947 -119458497 - MER47B DNA MER2_type 0 418 20 1750 131 29 35 chr9 22813093 22813405 -119458039 + AluSx SINE Alu 1 310 -2 206 318 0 15 chr9 22814002 22814068 -119457376 - MER5A DNA MER1_type -14 175 111 288 291 27 0 chr9 22814263 22814373 -119457071 + MIR SINE MIR 129 241 -21 27 29 0 0 chr9 22814383 22814417 -119457027 + GC_rich Low_complexity Low_complexity 1 34 0 2147 119 0 0 chr9 22814963 22815265 -119456179 + AluJb SINE Alu 2 303 -9 299 265 0 61 chr9 22815631 22815729 -119455715 - MIR SINE MIR -117 145 54 296 138 86 0 chr9 22817903 22817961 -119453483 + L2 LINE L2 3251 3313 0 1313 230 66 34 chr9 22818321 22819246 -119452198 + L1ME1 LINE L1 5042 6159 -7 345 234 186 28 chr9 22819950 22820095 -119451349 - MER96 DNA MER1_type? -6 169 2 858 160 57 61 chr9 22820584 22820796 -119450648 + MER2 DNA MER2_type 1 211 -134 875 139 0 29 chr9 22821285 22821422 -119450022 - FLAM_A SINE Alu 0 133 1 504 198 0 0 chr9 22821536 22821627 -119449817 + AluJ/FLAM SINE Alu 1 91 -221 24 0 0 0 chr9 22822223 22822247 -119449197 + AT_rich Low_complexity Low_complexity 1 24 0 302 292 91 32 chr9 22822305 22822459 -119448985 + MIR SINE MIR 34 196 -66 23 0 0 0 chr9 22823666 22823689 -119447755 + AT_rich Low_complexity Low_complexity 1 23 0 506 301 60 19 chr9 22823698 22823967 -119447477 + L1MC/D LINE L1 4330 4609 -1537 1287 72 0 0 chr9 22823992 22824145 -119447299 + AluY SINE Alu 1 153 -158 468 288 97 67 chr9 22824160 22824605 -119446839 + L1MC/D LINE L1 4623 5080 -1066 417 269 24 111 chr9 22824648 22824709 -119446735 + L1MC/D LINE L1 5315 5380 -2428 2268 114 0 0 chr9 22824709 22824999 -119446445 - AluSx SINE Alu -22 290 1 417 269 24 111 chr9 22824999 22825145 -119446299 + L1MC/D LINE L1 5380 5504 -2304 2963 217 66 24 chr9 22825393 22826481 -119444963 - L1ME2 LINE L1 -1 6232 5108 1292 229 145 30 chr9 22826485 22827009 -119444435 - L1ME2 LINE L1 -1818 4397 3814 988 268 96 40 chr9 22827017 22827577 -119443867 - L1ME2 LINE L1 -3925 2471 1944 189 0 0 0 chr9 22827577 22827598 -119443846 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2388 32 0 7 chr9 22827598 22827879 -119443565 - AluY SINE Alu -32 279 1 988 268 96 40 chr9 22827879 22828012 -119443432 - L1ME2 LINE L1 -4451 1945 1738 253 320 138 29 chr9 22828342 22828617 -119442827 - L1ME2 LINE L1 -5961 435 131 793 264 34 10 chr9 22829918 22830126 -119441318 - MIR SINE MIR -4 258 46 2060 209 24 7 chr9 22831762 22832219 -119439225 - MLT2B3 LTR ERVL -29 507 75 382 92 77 0 chr9 22832323 22832388 -119439056 - MLT2B3 LTR ERVL -483 71 2 378 0 0 0 chr9 22832388 22832430 -119439014 + (TG)n Simple_repeat Simple_repeat 1 42 0 23 54 0 0 chr9 22832460 22832497 -119438947 + AT_rich Low_complexity Low_complexity 1 37 0 246 260 136 63 chr9 22832812 22833023 -119438421 - MIR SINE MIR -24 184 8 8981 99 21 1 chr9 22833078 22834339 -119437105 - HSMAR1 DNA Mariner 0 1287 1 1421 239 59 10 chr9 22835079 22835485 -119435959 - MLT1C LTR MaLR -41 426 1 425 284 148 39 chr9 22835566 22835721 -119435723 + MER5A DNA MER1_type 5 176 -13 2006 103 13 3 chr9 22835772 22836084 -119435360 - MER57B LTR ERV1 0 434 120 208 303 253 10 chr9 22836125 22836224 -119435220 - MER5B DNA MER1_type -43 135 13 698 98 62 0 chr9 22836270 22836382 -119435062 - MER57B LTR ERV1 -315 119 1 351 231 32 128 chr9 22836382 22836412 -119435032 + MER5A DNA MER1_type 47 78 -111 2171 113 3 25 chr9 22836412 22836731 -119434713 + AluSx SINE Alu 1 312 0 351 231 32 128 chr9 22836731 22836856 -119434588 + MER5A DNA MER1_type 78 187 -2 1605 169 178 11 chr9 22836857 22837223 -119434221 + MSTA LTR MaLR 2 428 0 199 255 0 21 chr9 22837545 22837592 -119433852 - MER5B DNA MER1_type -42 136 91 2147 151 49 77 chr9 22838025 22838388 -119433056 + LTR32 LTR ERVL 15 364 -107 318 87 0 0 chr9 22838388 22838434 -119433010 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2147 151 49 77 chr9 22838434 22838540 -119432904 + LTR32 LTR ERVL 364 471 0 442 245 128 37 chr9 22838561 22838749 -119432695 - L2 LINE L2 -67 3246 3042 898 186 46 0 chr9 22838904 22839098 -119432346 - MER3 DNA MER1_type -6 203 1 2060 166 11 11 chr9 22839848 22840197 -119431247 + MLT1A1 LTR MaLR 17 365 0 2157 115 0 3 chr9 22840470 22840782 -119430662 + AluSq SINE Alu 2 312 0 3618 88 8 6 chr9 22840914 22841411 -119430033 + L1PA11 LINE L1 5666 6163 -11 31 110 0 0 chr9 22841421 22841557 -119429887 + AT_rich Low_complexity Low_complexity 1 136 0 233 303 273 0 chr9 22842754 22842886 -119428558 + MIR SINE MIR 94 261 -1 21 0 0 0 chr9 22843367 22843388 -119428056 + AT_rich Low_complexity Low_complexity 1 21 0 186 222 0 0 chr9 22843423 22843459 -119427985 - MIR SINE MIR -62 146 111 331 230 90 10 chr9 22843540 22843640 -119427804 + MER117 DNA MER1_type 41 148 -49 180 111 0 0 chr9 22843878 22843905 -119427539 + (T)n Simple_repeat Simple_repeat 1 27 0 576 277 59 31 chr9 22845008 22845241 -119426203 - MIR SINE MIR 0 262 21 199 360 105 12 chr9 22845401 22845487 -119425957 - MIR SINE MIR -99 109 16 356 294 149 23 chr9 22845760 22845981 -119425463 - L1ME4a LINE L1 -9 6112 5864 23 78 0 0 chr9 22846023 22846074 -119425370 + AT_rich Low_complexity Low_complexity 1 51 0 6649 30 4 0 chr9 22846179 22846971 -119424473 + L1PA4 LINE L1 5361 6155 0 201 39 0 0 chr9 22846985 22847011 -119424433 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 377 173 27 0 chr9 22847027 22847102 -119424342 - L1ME4a LINE L1 -454 5667 5591 23 33 0 0 chr9 22847163 22847193 -119424251 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr9 22847587 22847625 -119423819 + AT_rich Low_complexity Low_complexity 1 38 0 337 322 49 53 chr9 22848174 22848438 -119423006 + MLT1J LTR MaLR 245 507 -4 264 257 14 0 chr9 22849756 22849826 -119421618 + MLT1K LTR MaLR 510 580 -8 1930 164 23 33 chr9 22852272 22852663 -119418781 - L1MA8 LINE L1 -3 6288 5902 203 200 0 0 chr9 22852762 22852802 -119418642 - MIR SINE MIR -160 102 63 252 0 0 0 chr9 22852868 22852896 -119418548 + (A)n Simple_repeat Simple_repeat 1 28 0 572 246 68 35 chr9 22853577 22853744 -119417700 + MIR SINE MIR 32 192 -70 554 82 12 0 chr9 22853744 22853829 -119417615 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 198 0 0 0 chr9 22853830 22853852 -119417592 + (CTAG)n Simple_repeat Simple_repeat 1 22 0 572 246 68 35 chr9 22853852 22853912 -119417532 + MIR SINE MIR 191 262 0 2825 172 27 22 chr9 22853978 22854576 -119416868 + L1MB3 LINE L1 5581 6181 -2 2612 242 63 45 chr9 22854982 22855281 -119416163 - L1ME1 LINE L1 -4 6162 5870 1971 137 10 0 chr9 22855281 22855581 -119415863 - AluSx SINE Alu -9 303 1 2612 242 63 45 chr9 22855581 22856255 -119415189 - L1ME1 LINE L1 -296 5870 5171 680 183 0 122 chr9 22856984 22857230 -119414214 - L1ME4a LINE L1 -759 5387 5172 483 271 17 18 chr9 22858834 22859010 -119412434 + MIR SINE MIR 76 248 -14 39 60 0 0 chr9 22860052 22860119 -119411325 + AT_rich Low_complexity Low_complexity 1 67 0 1085 216 96 75 chr9 22861186 22861519 -119409925 - MER2 DNA MER2_type 0 345 6 338 154 0 77 chr9 22862044 22862109 -119409335 + MLT1G LTR MaLR 232 291 -299 276 264 115 44 chr9 22862241 22862470 -119408974 + L1MC4a LINE L1 5679 5822 -332 27 62 0 0 chr9 22862739 22862787 -119408657 + AT_rich Low_complexity Low_complexity 1 48 0 371 256 50 33 chr9 22862872 22863052 -119408392 + L1ME4a LINE L1 5928 6110 -11 484 244 188 6 chr9 22863586 22863746 -119407698 - MIR SINE MIR 0 262 74 1145 209 77 7 chr9 22864000 22864297 -119407147 - MER33 DNA MER1_type 0 324 7 1944 244 95 52 chr9 22865595 22865741 -119405703 - L1ME3A LINE L1 -10 6440 6302 1539 222 28 19 chr9 22865741 22866101 -119405343 - MLT1A1 LTR MaLR -2 363 1 1944 244 95 52 chr9 22866101 22866754 -119404690 - L1ME3A LINE L1 -148 6302 5607 1230 252 101 83 chr9 22866776 22867860 -119403584 + L1M4 LINE L1 4204 5306 -840 1594 165 57 6 chr9 22867992 22868308 -119403136 + L1MC3 LINE L1 7282 7613 -172 22 0 0 0 chr9 22868379 22868401 -119403043 + AT_rich Low_complexity Low_complexity 1 22 0 385 72 0 58 chr9 22868520 22868589 -119402855 - L1MC1 LINE L1 0 6333 6269 3758 231 16 14 chr9 22868596 22869677 -119401767 - L1ME3A LINE L1 -2155 4271 3189 698 239 25 5 chr9 22869675 22869872 -119401572 + L1M2 LINE L1 2472 2672 -4177 * 12273 93 20 2 chr9 22869875 22871554 -119399890 + L1P3 LINE L1 20 1727 -4734 5043 127 22 4 chr9 22871564 22872335 -119399109 + Tigger2 DNA MER2_type 1933 2717 -1 414 106 59 0 chr9 22872429 22872624 -119398820 + (TA)n Simple_repeat Simple_repeat 1 206 0 1272 157 4 38 chr9 22872904 22872969 -119398475 - L1MCa LINE L1 -3947 2479 2413 2244 94 3 3 chr9 22872969 22873266 -119398178 - AluY SINE Alu -14 297 1 1272 157 4 38 chr9 22873266 22873503 -119397941 - L1MCa LINE L1 -4013 2413 2238 * 1475 157 87 36 chr9 22873480 22874220 -119397224 - L1MCa LINE L1 -4426 2000 1299 4003 171 74 12 chr9 22874220 22874965 -119396479 + MER54B LTR ERVL 3 793 0 1475 157 87 36 chr9 22874965 22875021 -119396423 - L1MCa LINE L1 -5127 1299 1247 2127 117 3 7 chr9 22875021 22875330 -119396114 - AluSc SINE Alu -1 308 1 1475 157 87 36 chr9 22875330 22876242 -119395202 - L1MCa LINE L1 -5179 1247 32 38 89 0 0 chr9 22876522 22876623 -119394821 + AT_rich Low_complexity Low_complexity 1 101 0 410 230 52 22 chr9 22876879 22877014 -119394430 + Charlie1 DNA MER1_type 2623 2761 0 1759 233 18 14 chr9 22877814 22878252 -119393192 + MER39 LTR ERV1 262 701 -6 3294 145 59 16 chr9 22878372 22878998 -119392446 + MER39B LTR ERV1 1 653 0 197 254 175 0 chr9 22879120 22879183 -119392261 - MIR SINE MIR -34 228 155 560 220 30 8 chr9 22879915 22880047 -119391397 - MIR SINE MIR -21 241 107 182 219 109 47 chr9 22880500 22880564 -119390880 + L2 LINE L2 3201 3268 -4 480 223 19 0 chr9 22881437 22881540 -119389904 - L1MC/D LINE L1 -783 5550 5446 363 299 125 27 chr9 22881735 22881959 -119389485 - L1MC/D LINE L1 -1332 4814 4569 23 0 0 0 chr9 22882246 22882269 -119389175 + AT_rich Low_complexity Low_complexity 1 23 0 582 282 57 43 chr9 22882592 22882801 -119388643 - MIR SINE MIR -35 227 16 1496 216 0 3 chr9 22882871 22883154 -119388290 - AluJo SINE Alu -24 288 7 3260 190 86 17 chr9 22883161 22884549 -119386895 - L1MB2 LINE L1 -3 6168 4686 704 154 0 0 chr9 22884550 22884654 -119386790 + AluSg/x SINE Alu 197 300 -10 1464 214 12 3 chr9 22884657 22885003 -119386441 - L1MB2 LINE L1 -1459 4687 4339 767 220 0 0 chr9 22885010 22885160 -119386284 - MSTD LTR MaLR -11 385 236 183 257 69 40 chr9 22885426 22885527 -119385917 + MIR SINE MIR 8 111 -151 2645 146 46 70 chr9 22885576 22885805 -119385639 + L1MA2 LINE L1 3874 4107 -2039 1935 153 0 3 chr9 22885805 22886099 -119385345 - AluSx SINE Alu -19 293 1 2645 146 46 70 chr9 22886099 22886316 -119385128 + L1MA2 LINE L1 4107 4303 -1843 5169 118 29 1 chr9 22886316 22887137 -119384307 + L1MA2 LINE L1 5461 6304 0 2645 146 46 70 chr9 22887137 22887319 -119384125 + L1MA2 LINE L1 4303 4488 -1658 2400 46 6 56 chr9 22888589 22888912 -119382532 + AluY SINE Alu 1 307 -4 227 352 28 101 chr9 22890224 22890659 -119380785 - L2 LINE L2 -57 3215 2813 3564 236 28 21 chr9 22890772 22891743 -119379701 + Charlie1a DNA MER1_type 6 983 -472 313 328 60 48 chr9 22891845 22892095 -119379349 + MIR SINE MIR 10 262 0 26 30 0 0 chr9 22892445 22892478 -119378966 + AT_rich Low_complexity Low_complexity 1 33 0 29 70 0 0 chr9 22893078 22893135 -119378309 + AT_rich Low_complexity Low_complexity 1 57 0 315 302 9 9 chr9 22893501 22893607 -119377837 - MARNA DNA Mariner -307 279 174 5623 238 66 25 chr9 22894577 22896887 -119374557 + L1ME1 LINE L1 16 2549 -4097 273 119 0 0 chr9 22897120 22897162 -119374282 + (CA)n Simple_repeat Simple_repeat 1 42 0 2732 219 132 27 chr9 22897577 22898718 -119372726 + L1ME1 LINE L1 2714 3973 -2671 35 78 0 0 chr9 22899012 22899089 -119372355 + AT_rich Low_complexity Low_complexity 1 77 0 6174 165 40 7 chr9 22899236 22901562 -119369882 - L1PBa LINE L1 -2546 4316 1855 514 269 28 7 chr9 22901614 22901759 -119369685 + MIR SINE MIR 109 256 -6 3034 156 76 18 chr9 22902700 22903317 -119368127 - MER39B LTR ERV1 0 653 1 1763 217 24 22 chr9 22903436 22903881 -119367563 - MER39 LTR ERV1 -4 682 260 227 214 71 71 chr9 22903872 22903956 -119367488 - LTR48B LTR ERV1 -560 84 1 * 1397 213 68 18 chr9 22905560 22905959 -119365485 - Charlie1 DNA MER1_type 0 2761 2343 662 215 55 149 chr9 22906213 22906682 -119364762 - L1ME3A LINE L1 -3 6167 5743 3463 194 31 14 chr9 22906686 22907202 -119364242 - L1 LINE L1 -1455 4691 4154 1376 42 0 5 chr9 22907202 22907416 -119364028 + (TTC)n Simple_repeat Simple_repeat 1 213 0 3463 194 31 14 chr9 22907416 22907693 -119363751 - L1 LINE L1 -1992 4154 3883 3658 144 20 21 chr9 22908942 22909641 -119361803 - L1MA8 LINE L1 0 6291 5594 2548 248 65 28 chr9 22909641 22910137 -119361307 + L1ME1 LINE L1 4885 5361 -1471 8010 79 1 14 chr9 22910137 22912056 -119359388 + L1PA7 LINE L1 4206 6154 0 2548 248 65 28 chr9 22912056 22913024 -119358420 + L1ME1 LINE L1 5361 6583 -249 1394 196 85 26 chr9 22913024 22913376 -119358068 - MLT1A2 LTR MaLR 0 374 2 2548 248 65 28 chr9 22913376 22913626 -119357818 + L1ME1 LINE L1 6583 6822 -10 187 293 27 0 chr9 22913662 22913737 -119357707 + L2 LINE L2 2932 3008 -264 463 57 129 0 chr9 22915414 22915484 -119355960 - MADE1 DNA Mariner -1 79 1 4034 216 42 16 chr9 22919330 22920360 -119351084 + L1MC3 LINE L1 5407 6463 -1322 764 263 130 24 chr9 22920517 22920855 -119350589 - MER87 LTR ERV1 0 541 168 29 28 0 0 chr9 22921000 22921036 -119350408 + AT_rich Low_complexity Low_complexity 1 36 0 1605 184 7 7 chr9 22921155 22921454 -119349990 - AluJo SINE Alu -10 302 4 753 161 40 0 chr9 22921458 22921607 -119349837 + L1MA6 LINE L1 6142 6296 -4 2061 96 17 24 chr9 22922183 22922475 -119348969 - AluSc SINE Alu -16 293 4 742 344 113 25 chr9 22922542 22923106 -119348338 + L2 LINE L2 1723 2336 -978 537 74 0 0 chr9 22923311 22923392 -119348052 - L1MA3 LINE L1 0 6305 6225 22 56 0 0 chr9 22923572 22923608 -119347836 + AT_rich Low_complexity Low_complexity 1 36 0 311 131 24 24 chr9 22924866 22924950 -119346494 + (TA)n Simple_repeat Simple_repeat 2 85 0 1454 194 0 27 chr9 22925130 22925423 -119346021 - AluJo SINE Alu -15 297 13 4548 22 0 0 chr9 22926282 22927110 -119344334 - L1P2 LINE L1 -366 5789 4962 1522 33 0 0 chr9 22927110 22927291 -119344153 + L1PA4 LINE L1 5975 6155 0 186 309 53 21 chr9 22928238 22928332 -119343112 - MIR SINE MIR 0 262 166 1393 206 90 0 chr9 22929303 22929580 -119341864 + AluJo SINE Alu 1 302 -10 6947 244 64 22 chr9 22929620 22933137 -119338307 - L1PA13 LINE L1 -2546 4251 1 415 277 38 13 chr9 22933157 22933389 -119338055 + MER57-int LTR ERV1 4982 6051 -1486 1453 216 0 34 chr9 22934618 22934914 -119336530 - AluJo SINE Alu -26 286 1 879 256 62 50 chr9 22935192 22935532 -119335912 + MER57-int LTR ERV1 6794 7137 -400 1430 278 24 7 chr9 22935543 22935960 -119335484 + MER57B LTR ERV1 10 433 -1 267 31 0 0 chr9 22937532 22937564 -119333880 + (TG)n Simple_repeat Simple_repeat 1 32 0 191 141 59 24 chr9 22937586 22937671 -119333773 + (TA)n Simple_repeat Simple_repeat 1 88 0 213 244 24 0 chr9 22937674 22937756 -119333688 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 407 306 113 5 chr9 22937987 22938173 -119333271 - MIR SINE MIR -3 259 54 1664 178 3 22 chr9 22938547 22938861 -119332583 - AluJb SINE Alu -4 308 1 183 42 0 0 chr9 22939295 22939319 -119332125 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 914 269 48 62 chr9 22939504 22940075 -119331369 + L1MEd LINE L1 1178 1778 -4618 24 0 0 0 chr9 22940085 22940109 -119331335 + AT_rich Low_complexity Low_complexity 1 24 0 418 242 57 78 chr9 22940163 22940601 -119330843 + L1MEd LINE L1 2020 2448 -3948 974 241 43 73 chr9 22940662 22940780 -119330664 + L1MEd LINE L1 2781 2901 -3314 2092 106 55 0 chr9 22940780 22941074 -119330370 + AluSx SINE Alu 3 312 0 974 241 43 73 chr9 22941074 22941334 -119330110 + L1MEd LINE L1 2901 3144 -3071 2339 99 0 6 chr9 22941334 22941647 -119329797 + AluSx SINE Alu 2 312 0 974 241 43 73 chr9 22941647 22941772 -119329672 + L1MEd LINE L1 3144 3271 -2944 180 0 0 0 chr9 22941774 22941794 -119329650 + (TTG)n Simple_repeat Simple_repeat 2 21 0 265 325 96 21 chr9 22941864 22942173 -119329271 + L2 LINE L2 1825 2171 -1143 24 77 0 0 chr9 22942764 22942816 -119328628 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr9 22942844 22942867 -119328577 + AT_rich Low_complexity Low_complexity 1 23 0 1808 177 25 54 chr9 22942951 22943171 -119328273 - L1MCb LINE L1 -4946 1099 897 780 69 0 0 chr9 22943171 22943272 -119328172 - HY3 scRNA scRNA 0 101 1 1808 177 25 54 chr9 22943272 22943497 -119327947 - L1MCb LINE L1 -5148 897 667 342 98 0 0 chr9 22943535 22943586 -119327858 + (TA)n Simple_repeat Simple_repeat 1 51 0 3366 86 6 0 chr9 22943587 22944090 -119327354 - L1P5 LINE L1 -376 5775 5270 * 5646 200 10 16 chr9 22944088 22945640 -119325804 + L1P5 LINE L1 3803 5252 -894 1835 179 3 22 chr9 22945884 22946202 -119325242 + AluSx SINE Alu 1 312 0 434 88 25 0 chr9 22947065 22947145 -119324299 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 272 327 95 14 chr9 22947769 22947980 -119323464 + L2 LINE L2 1723 1950 -1364 28 86 0 0 chr9 22948586 22948656 -119322788 + AT_rich Low_complexity Low_complexity 1 70 0 203 179 0 0 chr9 22948738 22948777 -119322667 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2773 205 73 43 chr9 22949741 22950747 -119320697 - MER106B DNA MER1_type -3 1056 21 923 91 0 0 chr9 22952267 22952399 -119319045 + L1PA6 LINE L1 6023 6154 0 8116 224 30 18 chr9 22952406 22952827 -119318617 + L1MB3 LINE L1 2907 3322 -2824 2422 67 0 13 chr9 22952827 22953140 -119318304 + AluY SINE Alu 1 309 -2 8116 224 30 18 chr9 22953140 22955167 -119316277 + L1MB3 LINE L1 3322 5384 -762 459 202 0 10 chr9 22955169 22955268 -119316176 + MLT1A1 LTR MaLR 3 100 -274 773 211 0 7 chr9 22955287 22955439 -119316005 + MLT1A1 LTR MaLR 212 362 -3 2393 146 60 142 chr9 22955442 22955715 -119315729 + L1MB3 LINE L1 5380 5674 -509 216 0 0 0 chr9 22955715 22955739 -119315705 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2057 89 0 41 chr9 22955742 22956033 -119315411 - AluY SINE Alu -32 279 1 2393 146 60 142 chr9 22956033 22956596 -119314848 + L1MB3 LINE L1 5676 6151 -32 191 324 42 0 chr9 22957044 22957115 -119314329 - L2 LINE L2 -17 3296 3223 197 278 19 0 chr9 22957117 22957171 -119314273 - MIR SINE MIR -99 163 109 1891 199 25 81 chr9 22958038 22958707 -119312737 - L1MD3 LINE L1 -10 7985 7354 21 82 0 0 chr9 22959593 22959642 -119311802 + AT_rich Low_complexity Low_complexity 1 49 0 910 160 73 14 chr9 22959650 22959869 -119311575 + L1MA9 LINE L1 6071 6302 -10 527 321 111 55 chr9 22959950 22960499 -119310945 + L2 LINE L2 1716 2295 -1019 321 238 26 93 chr9 22960522 22960782 -119310662 + MER8 DNA MER2_type 7 239 0 7515 248 33 34 chr9 22962246 22965834 -119305610 + L1PA12 LINE L1 6 3055 -4526 22 35 0 0 chr9 22967462 22967491 -119303953 + AT_rich Low_complexity Low_complexity 1 29 0 2306 199 53 26 chr9 22967636 22968330 -119303114 + MER106B DNA MER1_type 16 728 -331 938 182 99 53 chr9 22968507 22968902 -119302542 + MER106B DNA MER1_type 643 1055 -4 197 143 0 20 chr9 22969866 22969915 -119301529 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3285 106 39 4 chr9 22970687 22971530 -119299914 + L1PA8A LINE L1 4907 5777 -354 6294 276 31 37 chr9 22971966 22974865 -119296579 - L1PA12 LINE L1 -5228 2353 6 660 243 21 0 chr9 22975575 22975810 -119295634 - L1M4 LINE L1 -3000 3146 2907 970 68 0 0 chr9 22975817 22975949 -119295495 - L1PA6 LINE L1 0 6154 6023 22 35 0 0 chr9 22976302 22976331 -119295113 + AT_rich Low_complexity Low_complexity 1 29 0 2748 217 68 23 chr9 22976481 22977401 -119294043 + MER106B DNA MER1_type 21 982 -77 34 0 0 0 chr9 22978452 22978486 -119292958 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr9 22978683 22978718 -119292726 + AT_rich Low_complexity Low_complexity 1 35 0 215 329 68 27 chr9 22978719 22978865 -119292579 - L2 LINE L2 -38 3275 3124 27 73 0 0 chr9 22979573 22979628 -119291816 + AT_rich Low_complexity Low_complexity 1 55 0 1096 82 0 0 chr9 22979745 22979903 -119291541 + L1P LINE L1 4880 5037 -1109 2880 102 23 4 chr9 22980003 22980765 -119290679 - L1PA8A LINE L1 -481 5650 4880 31 58 0 0 chr9 22980883 22980935 -119290509 + AT_rich Low_complexity Low_complexity 1 52 0 211 340 61 27 chr9 22981644 22981791 -119289653 + L2 LINE L2 3124 3275 -38 23 0 0 0 chr9 22982024 22982047 -119289397 + AT_rich Low_complexity Low_complexity 1 23 0 201 171 0 0 chr9 22982047 22982082 -119289362 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2876 206 72 23 chr9 22983120 22984030 -119287414 - MER106B DNA MER1_type -77 982 28 25 65 0 0 chr9 22985018 22985064 -119286380 + AT_rich Low_complexity Low_complexity 1 46 0 906 98 0 0 chr9 22985603 22985735 -119285709 + L1PA6 LINE L1 6023 6154 0 714 230 21 0 chr9 22985740 22985975 -119285469 + L1M4 LINE L1 2907 3146 -3000 7395 257 33 33 chr9 22986683 22990269 -119281175 + L1PA12 LINE L1 6 3055 -4526 821 89 0 16 chr9 22991532 22991655 -119279789 - L1PA8 LINE L1 0 6172 6052 202 211 0 39 chr9 22991973 22992025 -119279419 + T-rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 22992416 22992437 -119279007 + AT_rich Low_complexity Low_complexity 1 21 0 1662 95 5 5 chr9 22992609 22992831 -119278613 + AluSg/x SINE Alu 86 307 -5 2227 103 0 7 chr9 22993005 22993305 -119278139 + AluSc SINE Alu 1 298 -11 489 66 0 0 chr9 22993444 22993505 -119277939 - AluSg/x SINE Alu -177 133 73 250 109 0 0 chr9 22993506 22993552 -119277892 + Alu SINE Alu 251 296 -4 592 258 36 68 chr9 22993976 22994197 -119277247 + MIR SINE MIR 49 262 0 2986 157 11 0 chr9 22994509 22995052 -119276392 + L1PA12 LINE L1 2507 3055 -4526 185 228 70 0 chr9 22995243 22995300 -119276144 + L3b LINE CR1 1294 1354 -229 816 91 0 16 chr9 22996308 22996429 -119275015 - L1PA8 LINE L1 -4 6168 6050 3094 122 46 12 chr9 22996430 22997277 -119274167 - L1PA8 LINE L1 -351 5780 4907 180 340 162 15 chr9 22997303 22997562 -119273882 + L2 LINE L2 2027 2323 -991 207 146 0 0 chr9 22998063 22998104 -119273340 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2730 205 70 24 chr9 22999144 23000037 -119271407 - MER106B DNA MER1_type -77 982 48 3208 32 0 0 chr9 23001276 23001685 -119269759 - L1PA8A LINE L1 -3248 2898 2490 * 18177 57 17 2 chr9 23001682 23004534 -119266910 + L1PA8A LINE L1 2885 5768 -363 953 64 0 0 chr9 23004547 23004672 -119266772 + L1PA8 LINE L1 6048 6172 0 7557 255 32 30 chr9 23005965 23009540 -119261904 - L1PA12 LINE L1 -4526 3055 6 7433 35 0 1 chr9 23009735 23010931 -119260513 + L1PA3 LINE L1 4988 6175 0 935 91 0 0 chr9 23011125 23011257 -119260187 + L1PA6 LINE L1 6023 6154 0 1047 244 40 9 chr9 23011257 23011683 -119259761 + L1 LINE L1 2900 3338 -2808 2308 70 0 3 chr9 23011684 23011970 -119259474 + AluY SINE Alu 1 285 -26 1726 33 0 9 chr9 23011971 23012183 -119259261 + L1PA3 LINE L1 5946 6155 0 213 94 0 0 chr9 23012411 23012443 -119259001 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 844 120 0 0 chr9 23012444 23012569 -119258875 - L1PA8 LINE L1 0 6172 6048 3476 108 16 3 chr9 23012572 23013462 -119257982 - L1PA8 LINE L1 -354 5777 4880 34 55 0 0 chr9 23013580 23013635 -119257809 + AT_rich Low_complexity Low_complexity 1 55 0 27 0 0 0 chr9 23013985 23014012 -119257432 + AT_rich Low_complexity Low_complexity 1 27 0 1038 39 0 0 chr9 23014012 23014139 -119257305 - L1PA3 LINE L1 -3 6152 6026 217 340 61 27 chr9 23014496 23014643 -119256801 + L2 LINE L2 3124 3275 -38 217 197 0 30 chr9 23014872 23014938 -119256506 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 2718 203 83 48 chr9 23015896 23016903 -119254541 - MER106B DNA MER1_type -1 1058 16 22 35 0 0 chr9 23017048 23017077 -119254367 + AT_rich Low_complexity Low_complexity 1 29 0 284 311 68 19 chr9 23018665 23018826 -119252618 + MIR SINE MIR 82 250 -12 1961 184 67 12 chr9 23019610 23020013 -119251431 + MER83 LTR ERV1 1 425 -23 2502 136 85 19 chr9 23021235 23021810 -119249634 - MER4B LTR ERV1 0 779 1 2361 120 11 0 chr9 23023023 23023382 -119248062 - MER57B LTR ERV1 -71 363 1 1229 237 34 3 chr9 23023809 23024134 -119247310 + L1MD3 LINE L1 7547 7881 -114 199 259 19 0 chr9 23024483 23024537 -119246907 + MIR SINE MIR 109 163 -99 1628 248 35 27 chr9 23024555 23025073 -119246371 - MLT2B3 LTR ERVL 0 520 3 2067 144 35 30 chr9 23025712 23026107 -119245337 - L1MB2 LINE L1 -2 6169 5773 2429 174 18 39 chr9 23026186 23026630 -119244814 - L1M3 LINE L1 -369 5814 5386 1781 186 28 6 chr9 23026630 23026985 -119244459 - MLT1A1 LTR MaLR 0 365 3 2429 174 18 39 chr9 23026985 23027239 -119244205 - L1M3 LINE L1 -797 5386 5128 905 166 0 0 chr9 23027338 23027501 -119243943 + L1M1 LINE L1 5497 5659 -645 2054 138 10 0 chr9 23028889 23029187 -119242257 - AluSx SINE Alu -10 302 2 349 343 73 58 chr9 23029776 23030187 -119241257 - L2 LINE L2 -36 3236 2820 1813 213 133 5 chr9 23030870 23031372 -119240072 - MLT1F1 LTR MaLR 0 595 1 2268 105 0 3 chr9 23031760 23032074 -119239370 + AluSq SINE Alu 1 313 0 27 49 0 0 chr9 23033300 23033341 -119238103 + AT_rich Low_complexity Low_complexity 1 41 0 300 268 79 31 chr9 23033940 23034067 -119237377 - L1ME LINE L1 -478 5643 5511 183 42 0 0 chr9 23034670 23034694 -119236750 + (CA)n Simple_repeat Simple_repeat 2 25 0 783 169 0 0 chr9 23035095 23035219 -119236225 + FLAM_C SINE Alu 2 125 -8 1284 132 26 0 chr9 23035582 23035809 -119235635 + L1MA1 LINE L1 5610 5842 -460 338 102 0 194 chr9 23036025 23036074 -119235370 - HUERS-P1 LTR ERV1 -1766 4497 4475 1881 155 3 39 chr9 23036074 23036383 -119235061 + AluSx SINE Alu 5 302 -10 338 102 0 194 chr9 23036383 23036431 -119235013 - HUERS-P1 LTR ERV1 -1788 4475 4419 6492 228 84 31 chr9 23036434 23036798 -119234646 - HUERS-P1 LTR ERV1 -2664 4541 4198 2634 94 16 8 chr9 23036798 23037170 -119234274 - THE1C LTR MaLR 0 375 1 6492 228 84 31 chr9 23037170 23038469 -119232975 - HUERS-P1 LTR ERV1 -3007 4198 2789 6185 148 20 14 chr9 23038465 23040223 -119231221 - HUERS-P1 LTR ERV1 -5356 1849 1 * 1342 153 18 0 chr9 23040257 23040480 -119230964 - MER50 LTR ERV1 -12 722 496 391 309 54 6 chr9 23041486 23041654 -119229790 + MIR SINE MIR 84 259 -3 282 56 0 0 chr9 23041967 23042003 -119229441 + (TA)n Simple_repeat Simple_repeat 1 36 0 24 0 0 0 chr9 23042080 23042104 -119229340 + AT_rich Low_complexity Low_complexity 1 24 0 269 309 64 67 chr9 23044189 23044487 -119226957 + L2 LINE L2 1996 2292 -1022 245 307 143 14 chr9 23044569 23044709 -119226735 + L2 LINE L2 3155 3312 -1 743 199 14 0 chr9 23044763 23044904 -119226540 + FRAM SINE Alu 1 143 -33 2169 90 0 4 chr9 23044994 23045272 -119226172 + AluSg SINE Alu 1 277 -33 217 0 61 0 chr9 23045272 23045305 -119226139 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 461 254 86 43 chr9 23046001 23046280 -119225164 + L1MC4a LINE L1 5716 6006 -1802 839 223 0 30 chr9 23049125 23049322 -119222122 + MER31B LTR ERV1 276 466 0 242 232 18 0 chr9 23050025 23050081 -119221363 + MIR SINE MIR 107 163 -99 2245 88 0 0 chr9 23051380 23051664 -119219780 - AluSc SINE Alu -25 284 1 2362 190 76 64 chr9 23051667 23052523 -119218921 + MER106B DNA MER1_type 151 1016 -43 288 127 14 28 chr9 23053533 23053604 -119217840 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 21 0 0 0 chr9 23053607 23053628 -119217816 + AT_rich Low_complexity Low_complexity 1 21 0 309 369 130 22 chr9 23054061 23054614 -119216830 - L2 LINE L2 -978 2336 1724 33 80 0 0 chr9 23054687 23054762 -119216682 + AT_rich Low_complexity Low_complexity 1 75 0 241 232 54 0 chr9 23055031 23055087 -119216357 + MIR SINE MIR 84 142 -66 334 231 105 42 chr9 23055508 23055651 -119215793 - L1M LINE L1 -752 5418 5267 1189 150 16 0 chr9 23055751 23055944 -119215500 - AluSg/x SINE Alu -11 301 106 1662 135 108 27 chr9 23056260 23056594 -119214850 + MER46B DNA MER2_type 1 236 0 24 53 0 0 chr9 23056888 23056926 -119214518 + AT_rich Low_complexity Low_complexity 1 38 0 2107 88 56 0 chr9 23059197 23059482 -119211962 - AluY SINE Alu -7 304 4 6760 112 30 17 chr9 23059914 23060971 -119210473 + MER11C LTR ERVK 1 1071 0 1407 137 31 8 chr9 23061341 23061596 -119209848 - L1MA4A LINE L1 0 6303 6043 191 289 0 0 chr9 23061884 23061936 -119209508 - MIR SINE MIR -18 244 193 347 368 0 0 chr9 23061936 23062042 -119209402 - L1M2c LINE L1 -5612 1177 1072 * 6111 150 37 10 chr9 23062037 23064100 -119207344 + L1MA5A LINE L1 4166 6292 -5 23 68 0 0 chr9 23065675 23065719 -119205725 + AT_rich Low_complexity Low_complexity 1 44 0 13833 113 5 13 chr9 23065856 23067986 -119203458 + L1P LINE L1 1341 3454 -2692 3191 64 0 5 chr9 23067971 23068379 -119203065 - L1P LINE L1 -1179 4967 4562 * 4395 187 13 6 chr9 23068480 23069336 -119202108 - L1P LINE L1 -1957 4189 3328 3202 247 47 7 chr9 23069332 23070191 -119201253 - L1P LINE L1 -3690 2456 1564 * 3245 23 0 0 chr9 23070198 23070596 -119200848 + L1P LINE L1 2805 3202 -2944 908 276 24 9 chr9 23070696 23071036 -119200408 - L1 LINE L1 -923 5223 4879 22 35 0 0 chr9 23071141 23071170 -119200274 + AT_rich Low_complexity Low_complexity 1 29 0 1289 108 54 58 chr9 23072266 23072484 -119198960 - L1MA5A LINE L1 0 6297 6079 1924 132 20 54 chr9 23072484 23072833 -119198611 - MER1B DNA MER1_type 0 337 1 1289 108 54 58 chr9 23072833 23072892 -119198552 - L1MA5A LINE L1 -218 6079 6021 228 182 91 0 chr9 23072907 23072951 -119198493 + MER75 DNA T2_type 453 500 -4 2100 143 48 11 chr9 23072955 23073334 -119198110 - L1MA5A LINE L1 -266 6031 5639 424 103 0 0 chr9 23073330 23073388 -119198056 - L1MA1 LINE L1 -447 5855 5798 * 2216 200 22 19 chr9 23073389 23073924 -119197520 - L1 LINE L1 -1444 4702 4166 469 169 12 0 chr9 23073931 23074014 -119197430 - L1 LINE L1 -1897 4249 4166 325 269 47 107 chr9 23074009 23074158 -119197286 + L1M2c LINE L1 1072 1211 -5578 * 5540 92 7 3 chr9 23074493 23075265 -119196179 + L1PA14 LINE L1 5383 6157 -4 184 331 33 26 chr9 23075378 23075529 -119195915 - L2 LINE L2 -978 2336 2185 2088 142 7 0 chr9 23076682 23076812 -119194632 + AluSx SINE Alu 1 129 -183 207 0 0 0 chr9 23076812 23076835 -119194609 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2088 142 7 0 chr9 23076835 23077014 -119194430 + AluSx SINE Alu 129 312 0 647 243 27 36 chr9 23077114 23077336 -119194108 + L1M4 LINE L1 5057 5276 -870 472 72 14 0 chr9 23077336 23077405 -119194039 + L1MA3 LINE L1 5778 5847 -458 4348 230 94 87 chr9 23077516 23078675 -119192769 + L1MD3 LINE L1 6126 7419 -576 519 263 0 0 chr9 23078675 23078793 -119192651 + MLT1F1 LTR MaLR 8 125 -442 4348 230 94 87 chr9 23078793 23079360 -119192084 + L1MD3 LINE L1 7419 7981 -14 1357 232 146 19 chr9 23079533 23079943 -119191501 + MER31B LTR ERV1 5 466 0 192 314 43 0 chr9 23080720 23080790 -119190654 + L2 LINE L2 3224 3296 -17 3196 204 64 32 chr9 23081672 23082693 -119188751 + MER106B DNA MER1_type 3 1055 -4 21 57 0 0 chr9 23083674 23083709 -119187735 + AT_rich Low_complexity Low_complexity 1 35 0 200 217 49 84 chr9 23083973 23084116 -119187328 - L2 LINE L2 -65 3248 3111 24 0 0 0 chr9 23086821 23086845 -119184599 + AT_rich Low_complexity Low_complexity 1 24 0 517 31 0 0 chr9 23086845 23086909 -119184535 - L1PA4 LINE L1 -3 6152 6089 207 0 0 0 chr9 23087110 23087133 -119184311 + (A)n Simple_repeat Simple_repeat 1 23 0 184 329 110 12 chr9 23087153 23087235 -119184209 + L2 LINE L2 1336 1425 -1889 296 266 47 0 chr9 23087486 23087655 -119183789 + (TA)n Simple_repeat Simple_repeat 2 178 0 212 286 24 24 chr9 23087616 23087784 -119183660 + (CATATA)n Simple_repeat Simple_repeat 5 172 0 * 272 209 46 13 chr9 23087788 23087795 -119183649 + (TA)n Simple_repeat Simple_repeat 1 6 -611 1581 183 21 3 chr9 23087795 23088085 -119183359 + AluJo SINE Alu 1 295 -17 272 209 46 13 chr9 23088085 23088386 -119183058 + (TA)n Simple_repeat Simple_repeat 6 617 0 2152 129 0 0 chr9 23089273 23089601 -119181843 - AluSc SINE Alu 0 309 1 5504 160 30 59 chr9 23090766 23092057 -119179387 - L1MA5A LINE L1 0 6297 4971 2195 85 7 0 chr9 23092057 23092360 -119179084 + AluY SINE Alu 1 305 0 5504 160 30 59 chr9 23092360 23092534 -119178910 - L1MA5A LINE L1 -1326 4971 4794 7630 24 2 0 chr9 23092534 23093581 -119177863 + L1PA3 LINE L1 5107 6155 0 5504 160 30 59 chr9 23093581 23094296 -119177148 - L1MA5A LINE L1 -1503 4794 4185 477 254 11 2 chr9 23094287 23094415 -119177029 + L1M2c LINE L1 813 1256 -5533 * 192 286 0 0 chr9 23094415 23094471 -119176973 + MIR SINE MIR 193 248 -14 1256 148 25 12 chr9 23094759 23095002 -119176442 + L1MA4A LINE L1 6052 6297 -6 250 309 36 22 chr9 23096560 23096699 -119174745 - L2 LINE L2 -978 2336 2196 1048 174 20 48 chr9 23097233 23097455 -119173989 + L1MC/D LINE L1 5044 5271 -964 3214 106 27 2 chr9 23097455 23097966 -119173478 + L1MA3 LINE L1 5782 6305 0 225 0 0 0 chr9 23097969 23097994 -119173450 + (CA)n Simple_repeat Simple_repeat 2 26 0 195 42 0 0 chr9 23097993 23098017 -119173427 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 1048 174 20 48 chr9 23097994 23098239 -119173205 + L1MC/D LINE L1 5273 5492 -743 2850 204 80 26 chr9 23099020 23099814 -119171630 + MER106B DNA MER1_type 21 876 -183 2237 129 0 0 chr9 23099814 23100124 -119171320 - AluSg SINE Alu 0 310 1 2850 204 80 26 chr9 23100124 23100274 -119171170 + MER106B DNA MER1_type 876 1016 -43 197 143 0 20 chr9 23101299 23101348 -119170096 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 16159 27 0 0 chr9 23102433 23105116 -119166328 + L1PA4 LINE L1 3471 6152 -3 33 0 0 0 chr9 23105116 23105149 -119166295 + AT_rich Low_complexity Low_complexity 1 33 0 4989 198 21 8 chr9 23105288 23106319 -119165125 - L1PA13 LINE L1 -4583 2204 1160 1438 222 36 0 chr9 23108001 23108335 -119163109 + L1MD3 LINE L1 7551 7896 -99 1720 219 62 31 chr9 23108901 23109381 -119162063 - MLT2B3 LTR ERVL -57 497 3 1818 170 38 30 chr9 23110007 23110402 -119161042 - L1MB2 LINE L1 -2 6169 5772 1695 181 16 106 chr9 23110480 23110959 -119160485 - L1M3 LINE L1 -354 5814 5390 1743 188 28 6 chr9 23110959 23111311 -119160133 - MLT1A1 LTR MaLR -3 362 3 1695 181 16 106 chr9 23111311 23111389 -119160055 - L1M3 LINE L1 -778 5390 5307 6811 58 0 2 chr9 23111394 23112557 -119158887 - L1PA3 LINE L1 -1 6154 4978 1768 63 8 0 chr9 23112559 23112797 -119158647 + L1P LINE L1 4090 4329 -1817 230 226 129 54 chr9 23112921 23113014 -119158430 - L2 LINE L2 -2498 816 717 237 271 16 33 chr9 23114373 23114495 -119156949 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 235 188 0 31 chr9 23114998 23115062 -119156382 + A-rich Low_complexity Low_complexity 2 63 0 510 268 139 19 chr9 23116198 23116407 -119155037 - MIR SINE MIR -25 237 4 246 231 161 39 chr9 23116427 23116557 -119154887 - MIR SINE MIR -77 185 40 770 180 40 0 chr9 23118421 23118568 -119152876 + MLT1B LTR MaLR 2 154 -236 447 225 100 30 chr9 23118568 23118807 -119152637 + MSTB2 LTR MaLR 1 269 -188 517 68 0 0 chr9 23118840 23118913 -119152531 + MSTB2 LTR MaLR 383 455 -2 1140 195 25 4 chr9 23118915 23119151 -119152293 + MLT1B LTR MaLR 150 390 0 286 252 198 9 chr9 23119431 23119542 -119151902 - MER5B DNA MER1_type -42 136 5 2435 82 0 0 chr9 23119565 23119868 -119151576 - AluY SINE Alu -8 303 1 914 185 189 37 chr9 23119901 23120198 -119151246 + MLT1D LTR MaLR 1 342 -163 990 168 11 1 chr9 23120199 23120381 -119151063 - MLT1B LTR MaLR -51 339 159 660 112 0 0 chr9 23120385 23120483 -119150961 - MSTB2 LTR MaLR -2 455 358 623 167 69 123 chr9 23120478 23120619 -119150825 + MLT1D LTR MaLR 308 436 -69 * 1820 155 7 30 chr9 23120619 23120923 -119150521 - AluJb SINE Alu -15 297 1 623 167 69 123 chr9 23120923 23120985 -119150459 + MLT1D LTR MaLR 436 500 -5 818 199 74 0 chr9 23121047 23121223 -119150221 - MER5A DNA MER1_type 0 189 1 426 291 57 6 chr9 23121597 23121755 -119149689 + MER20 DNA MER1_type 28 193 -26 1967 143 0 0 chr9 23122058 23122344 -119149100 - AluSx SINE Alu -26 286 1 679 272 154 35 chr9 23122861 23123342 -119148102 + L2 LINE L2 2423 2960 -354 1636 159 73 9 chr9 23123363 23123678 -119147766 - MLT1A1 LTR MaLR -6 359 25 386 308 13 63 chr9 23124361 23124520 -119146924 + MIR3 SINE MIR 49 199 -9 468 0 0 0 chr9 23126188 23126240 -119145204 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 57 0 0 chr9 23126359 23126394 -119145050 + GC_rich Low_complexity Low_complexity 1 35 0 242 296 71 10 chr9 23126785 23126883 -119144561 - MIR SINE MIR 0 262 159 26 0 0 0 chr9 23127033 23127059 -119144385 + GC_rich Low_complexity Low_complexity 1 26 0 624 198 19 37 chr9 23128293 23128455 -119142989 - MER58 DNA MER1_type -2254 166 8 307 217 17 96 chr9 23128502 23128617 -119142827 - LTR37B LTR ERV1 -362 106 1 239 241 96 12 chr9 23131365 23131448 -119139996 - MIR SINE MIR -71 191 102 259 343 67 22 chr9 23131697 23131831 -119139613 - MIR SINE MIR -108 154 15 2826 103 14 52 chr9 23131848 23132345 -119139099 + MER39B LTR ERV1 1 478 -175 1001 84 11 13 chr9 23132374 23132667 -119138777 + MER4A LTR ERV1 30 389 -275 542 121 0 11 chr9 23132666 23132757 -119138687 + MER4A LTR ERV1 575 664 0 * 621 118 20 0 chr9 23132757 23132859 -119138585 + MER39B LTR ERV1 474 577 -76 522 167 7 90 chr9 23133760 23133904 -119137540 - MER94 DNA DNA -2 132 1 203 306 0 42 chr9 23135127 23135199 -119136245 - L2 LINE L2 -2070 1244 1176 254 333 102 61 chr9 23135229 23136049 -119135395 - L2 LINE L2 -2239 1075 222 5041 160 31 23 chr9 23136141 23137634 -119133810 - L1MA7 LINE L1 -24 6267 4767 320 160 40 0 chr9 23137659 23137734 -119133710 - L1MA5 LINE L1 0 6300 6223 1841 156 43 109 chr9 23137734 23138240 -119133204 - MER21A LTR ERV1 0 931 459 2372 83 0 3 chr9 23138586 23138886 -119132558 + AluSp SINE Alu 1 299 -14 248 182 18 18 chr9 23138978 23139033 -119132411 + CT-rich Low_complexity Low_complexity 4 58 0 273 98 0 0 chr9 23139236 23139277 -119132167 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 180 0 0 0 chr9 23140810 23140830 -119130614 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 360 187 193 0 chr9 23140922 23141042 -119130402 + MIR SINE MIR 114 261 -1 239 335 44 112 chr9 23141056 23141486 -119129958 - L2 LINE L2 -38 3234 2834 521 284 0 0 chr9 23141580 23141725 -119129719 - FLAM_A SINE Alu 0 145 1 278 125 0 0 chr9 23142852 23142892 -119128552 - MLT2D LTR ERVL -8 389 350 278 278 0 46 chr9 23142893 23143001 -119128443 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 1747 161 25 6 chr9 23143003 23143326 -119128118 - MLT2D LTR ERVL -84 330 2 209 224 82 0 chr9 23143439 23143488 -119127956 - L2 LINE L2 -4 3268 3216 216 0 0 0 chr9 23145346 23145370 -119126074 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 244 286 36 0 chr9 23145579 23145663 -119125781 - MIR SINE MIR -48 214 128 255 263 0 175 chr9 23145770 23145930 -119125514 - L2 LINE L2 -76 3196 3065 25 31 0 0 chr9 23146442 23146474 -119124970 + AT_rich Low_complexity Low_complexity 1 32 0 25 65 0 0 chr9 23146522 23146568 -119124876 + AT_rich Low_complexity Low_complexity 1 46 0 902 275 9 9 chr9 23147975 23148204 -119123240 + MIR SINE MIR 34 262 0 5810 31 0 0 chr9 23148251 23148928 -119122516 - L1PA5 LINE L1 -13 6141 5465 1609 210 7 0 chr9 23149555 23149855 -119121589 - AluJo SINE Alu -8 304 3 3664 286 94 78 chr9 23151122 23153503 -119117941 + L2 LINE L2 67 2484 -830 806 98 0 8 chr9 23153526 23153649 -119117795 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1433 214 0 11 chr9 23153654 23153930 -119117514 - AluJb SINE Alu -39 273 1 1019 318 93 7 chr9 23153939 23154360 -119117084 + L2 LINE L2 2490 2946 -368 331 271 164 0 chr9 23154486 23154608 -119116836 + L2 LINE L2 3172 3313 0 358 266 122 47 chr9 23154980 23155194 -119116250 + L1ME4a LINE L1 5699 5928 -193 31 58 0 0 chr9 23155329 23155381 -119116063 + AT_rich Low_complexity Low_complexity 1 52 0 25 51 0 0 chr9 23155462 23155501 -119115943 + AT_rich Low_complexity Low_complexity 1 39 0 293 253 184 0 chr9 23156125 23156212 -119115232 - L2 LINE L2 -1 3271 3169 340 316 143 0 chr9 23156722 23156890 -119114554 - MIR SINE MIR -25 237 46 255 211 128 20 chr9 23157542 23157652 -119113792 + MLT1E1 LTR MaLR 402 641 -13 2218 118 42 91 chr9 23158676 23158924 -119112520 - MSTA LTR MaLR -1 427 168 1885 105 3 82 chr9 23158924 23159229 -119112215 - AluSx SINE Alu -31 281 1 2218 118 42 91 chr9 23159229 23159241 -119112203 - MSTA LTR MaLR -260 168 157 1348 113 214 23 chr9 23159241 23159498 -119111946 - AluSg1 SINE Alu -3 306 1 2218 118 42 91 chr9 23159498 23159685 -119111759 - MSTA LTR MaLR -271 157 1 314 292 92 79 chr9 23159867 23160013 -119111431 + MIR SINE MIR 20 172 -90 2041 174 36 71 chr9 23160013 23160536 -119110908 - MLT1D LTR MaLR 0 505 1 314 292 92 79 chr9 23160536 23160629 -119110815 + MIR SINE MIR 172 262 0 3214 255 98 34 chr9 23161270 23162151 -119109293 + MSTD-int LTR MaLR 794 1730 -5 1754 180 83 21 chr9 23162156 23162529 -119108915 + MSTD LTR MaLR 1 396 0 470 291 148 14 chr9 23162598 23162808 -119108636 + MIR SINE MIR 13 250 -12 407 319 65 29 chr9 23163149 23163659 -119107785 - L1ME LINE L1 -4981 1089 557 319 250 50 0 chr9 23163662 23163762 -119107682 - MER58C DNA MER1_type -8 207 103 215 229 16 0 chr9 23163776 23163837 -119107607 + CT-rich Low_complexity Low_complexity 3 64 0 334 217 0 0 chr9 23163839 23163899 -119107545 - MER58C DNA MER1_type -117 98 39 512 303 11 11 chr9 23164488 23164663 -119106781 - L1ME LINE L1 -5893 177 3 329 360 98 39 chr9 23164725 23165114 -119106330 - L2 LINE L2 -547 2767 2356 1969 147 3 3 chr9 23166068 23166367 -119105077 - AluJb SINE Alu -12 300 2 289 334 135 55 chr9 23166448 23166849 -119104595 + L2 LINE L2 2470 2902 -412 180 299 312 0 chr9 23167107 23167184 -119104260 + L2 LINE L2 3197 3297 -16 455 118 13 0 chr9 23168865 23168941 -119102503 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 184 80 93 13 chr9 23169025 23169100 -119102344 + (TA)n Simple_repeat Simple_repeat 2 82 0 410 218 6 0 chr9 23169125 23169281 -119102163 + (TA)n Simple_repeat Simple_repeat 1 157 0 791 170 29 136 chr9 23170199 23170413 -119101031 - MLT1A2 LTR MaLR -5 377 184 2296 107 10 0 chr9 23170759 23171067 -119100377 - AluSx SINE Alu -1 311 1 1043 133 53 142 chr9 23172274 23172613 -119098831 - MER33 DNA MER1_type 0 324 16 234 290 16 0 chr9 23172766 23172828 -119098616 - L2 LINE L2 -12 3260 3198 244 321 87 82 chr9 23173218 23173402 -119098042 - L2 LINE L2 -224 3048 2864 285 29 0 0 chr9 23173402 23173436 -119098008 + (TG)n Simple_repeat Simple_repeat 2 35 0 2091 136 131 13 chr9 23174582 23174965 -119096479 + MSTA LTR MaLR 1 428 0 1597 193 28 128 chr9 23176752 23177323 -119094121 + MER67D LTR ERV1 1 514 0 764 185 93 44 chr9 23177511 23177716 -119093728 + L2 LINE L2 3099 3313 0 255 343 29 58 chr9 23178361 23178533 -119092911 - MIR SINE MIR -50 212 46 881 272 0 44 chr9 23178749 23178999 -119092445 + MIR SINE MIR 21 259 -3 241 291 117 29 chr9 23179714 23179817 -119091627 + LTR16A LTR ERVL 1 112 -338 328 313 121 23 chr9 23179902 23180167 -119091277 + LTR16A LTR ERVL 160 450 0 286 338 125 0 chr9 23180472 23180608 -119090836 - MIR SINE MIR -29 233 81 289 305 205 26 chr9 23180696 23180886 -119090558 - MIR SINE MIR -37 225 2 233 378 32 13 chr9 23181334 23181490 -119089954 + L2 LINE L2 2892 3050 -222 321 299 0 13 chr9 23181856 23181933 -119089511 + L2 LINE L2 3166 3241 -31 1896 188 45 47 chr9 23182789 23183242 -119088202 + L1MB7 LINE L1 5685 6138 -46 1867 151 9 103 chr9 23183242 23183667 -119087777 - MLT1B LTR MaLR -2 388 4 1896 188 45 47 chr9 23183667 23183702 -119087742 + L1MB7 LINE L1 6138 6172 -12 792 229 27 6 chr9 23184601 23184784 -119086660 - MER5A DNA MER1_type -2 187 1 21 0 0 0 chr9 23185301 23185322 -119086122 + AT_rich Low_complexity Low_complexity 1 21 0 290 252 7 116 chr9 23185441 23185588 -119085856 - MIR SINE MIR -49 213 83 942 278 49 35 chr9 23186417 23187060 -119084384 + L2 LINE L2 2431 3309 -4 735 277 84 14 chr9 23188891 23189262 -119082182 + ERVL LTR ERVL 4184 4616 -1148 517 279 95 0 chr9 23189285 23189432 -119082012 + MER97b DNA MER1_type? 22 182 -871 1040 222 31 111 chr9 23190241 23190629 -119080815 + LTR16A1 LTR ERVL 101 457 0 24 53 0 0 chr9 23190692 23190730 -119080714 + AT_rich Low_complexity Low_complexity 1 38 0 1732 183 3 3 chr9 23190960 23191261 -119080183 + AluJb SINE Alu 1 301 -11 28 0 0 0 chr9 23191896 23191924 -119079520 + AT_rich Low_complexity Low_complexity 1 28 0 231 132 26 0 chr9 23192642 23192680 -119078764 - MER5C DNA MER1_type 0 324 286 3481 127 30 24 chr9 23192708 23193257 -119078187 + LTR49 LTR ERV1 1 556 -39 2253 117 15 6 chr9 23193257 23193590 -119077854 + MER1B DNA MER1_type 1 336 -1 3481 127 30 24 chr9 23193590 23193631 -119077813 + LTR49 LTR ERV1 556 595 0 672 246 130 5 chr9 23193637 23193844 -119077600 - MER5C DNA MER1_type -78 246 14 420 228 54 0 chr9 23195408 23195500 -119075944 - MER5A DNA MER1_type -84 105 9 383 294 11 71 chr9 23196485 23196669 -119074775 - MLT1J LTR MaLR -314 197 25 6108 28 0 0 chr9 23196967 23197678 -119073766 + L1PA5 LINE L1 5433 6143 -11 189 0 0 0 chr9 23197679 23197700 -119073744 + (TA)n Simple_repeat Simple_repeat 2 22 0 208 225 0 0 chr9 23198253 23198293 -119073151 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 501 287 112 56 chr9 23198892 23199680 -119071764 - L1MDa LINE L1 -4445 2496 1665 265 298 0 10 chr9 23199695 23199799 -119071645 - L1MDa LINE L1 -4955 1468 1366 1967 81 96 0 chr9 23201002 23201273 -119070171 - AluY SINE Alu -14 297 1 452 145 0 24 chr9 23201273 23201356 -119070088 - AluYb8 SINE Alu -184 134 54 252 399 28 21 chr9 23202520 23202663 -119068781 - MIR SINE MIR -100 162 19 722 281 20 5 chr9 23203316 23203512 -119067932 + MIR SINE MIR 1 199 -63 234 256 50 109 chr9 23203532 23203770 -119067674 + L1ME3A LINE L1 5942 6165 -5 261 227 18 18 chr9 23203848 23203958 -119067486 + (TA)n Simple_repeat Simple_repeat 2 111 0 7257 149 13 10 chr9 23204994 23206271 -119065173 - L1PA10 LINE L1 -3198 2948 1668 * 11571 108 16 104 chr9 23206259 23208583 -119062861 + L1PA10 LINE L1 2923 5042 -1104 4842 91 6 1 chr9 23208583 23209238 -119062206 + L1PA7 LINE L1 5494 6154 0 5679 109 37 9 chr9 23209238 23210347 -119061097 + L1PA10 LINE L1 5031 6164 -4 27 62 0 0 chr9 23211038 23211086 -119060358 + AT_rich Low_complexity Low_complexity 1 48 0 3688 123 25 13 chr9 23211225 23211820 -119059624 + LTR43 LTR ERV1 1 602 0 25 75 0 0 chr9 23212790 23212843 -119058601 + AT_rich Low_complexity Low_complexity 1 53 0 180 77 0 0 chr9 23213820 23213846 -119057598 + (TG)n Simple_repeat Simple_repeat 1 26 0 2309 228 133 19 chr9 23213869 23214795 -119056649 - MER106B DNA MER1_type -26 1033 3 182 225 169 42 chr9 23215098 23215169 -119056275 + L2 LINE L2 3225 3304 -9 1894 141 41 0 chr9 23216117 23216408 -119055036 - AluSx SINE Alu -9 303 1 237 272 78 0 chr9 23216757 23216860 -119054584 + L1 LINE L1 2947 3057 -3089 1606 86 14 265 chr9 23216860 23217346 -119054098 + THE1B LTR MaLR 1 364 0 5862 215 37 38 chr9 23217348 23218516 -119052928 + L1 LINE L1 3055 4223 -1923 315 0 0 0 chr9 23218516 23218551 -119052893 + (CA)n Simple_repeat Simple_repeat 2 36 0 5862 215 37 38 chr9 23218551 23219137 -119052307 + L1 LINE L1 4223 4808 -1338 1953 125 28 0 chr9 23219268 23219434 -119052010 - AluSx SINE Alu -15 297 118 537 30 0 0 chr9 23219434 23219501 -119051943 + (TG)n Simple_repeat Simple_repeat 2 68 0 1953 125 28 0 chr9 23219501 23219621 -119051823 - AluSx SINE Alu -194 118 3 233 245 0 85 chr9 23221171 23221227 -119050217 - MIR SINE MIR 0 262 218 1704 173 32 0 chr9 23221227 23221511 -119049933 - AluJb SINE Alu -19 293 1 233 245 0 85 chr9 23221511 23221560 -119049884 - MIR SINE MIR -44 218 166 1953 124 43 0 chr9 23221908 23222190 -119049254 - AluSx SINE Alu -8 304 11 1792 124 0 50 chr9 23222496 23222778 -119048666 + AluSx SINE Alu 30 297 -15 529 135 154 10 chr9 23222980 23223084 -119048360 + MSTB1 LTR MaLR 286 404 -28 1258 230 28 12 chr9 23223090 23223416 -119048028 - MER87 LTR ERV1 0 541 211 2928 196 51 7 chr9 23223733 23224068 -119047376 - MER6 DNA MER2_type -291 574 204 366 42 0 0 chr9 23224068 23224116 -119047328 + (CA)n Simple_repeat Simple_repeat 2 49 0 2928 196 51 7 chr9 23224116 23224326 -119047118 - MER6 DNA MER2_type -661 204 5 22 80 0 0 chr9 23225415 23225465 -119045979 + AT_rich Low_complexity Low_complexity 1 50 0 864 230 0 89 chr9 23226433 23226681 -119044763 - MER39-int LTR ERV1 -4196 2135 1910 310 62 188 0 chr9 23226681 23226729 -119044715 + MER31A LTR ERV1 247 303 -182 1802 186 33 79 chr9 23226793 23227314 -119044130 - MER39-int LTR ERV1 -4462 1869 1373 281 205 39 0 chr9 23227449 23227527 -119043917 - MER39-int LTR ERV1 -4949 1382 1302 256 312 36 36 chr9 23227536 23227674 -119043770 - MER39-int LTR ERV1 -6115 216 79 2938 164 103 18 chr9 23227755 23228370 -119043074 - MER39 LTR ERV1 0 707 1 1672 149 64 10 chr9 23228679 23228974 -119042470 - AluSq SINE Alu 0 313 3 316 178 56 56 chr9 23229048 23229138 -119042306 + L1MC4 LINE L1 6614 6703 -1339 183 156 0 0 chr9 23229138 23229170 -119042274 + (TA)n Simple_repeat Simple_repeat 2 33 0 345 47 0 0 chr9 23229170 23229213 -119042231 + (CA)n Simple_repeat Simple_repeat 2 44 0 204 322 180 19 chr9 23229293 23229504 -119041940 + L2 LINE L2 2067 2311 -1003 3152 197 61 53 chr9 23230932 23231978 -119039466 - MER106B DNA MER1_type -2 1057 3 699 128 0 0 chr9 23232263 23232365 -119039079 + AluS SINE Alu 1 102 -211 1824 127 45 38 chr9 23232757 23233048 -119038396 + AluSp SINE Alu 1 293 -20 217 335 225 5 chr9 23233158 23233349 -119038095 - MIR SINE MIR -11 251 19 1674 217 33 62 chr9 23234035 23234127 -119037317 - MER31B LTR ERV1 0 466 373 2122 136 102 8 chr9 23234127 23234518 -119036926 - MSTA LTR MaLR 0 428 1 1674 217 33 62 chr9 23234518 23234905 -119036539 - MER31B LTR ERV1 -93 373 1 25 0 0 0 chr9 23235012 23235037 -119036407 + AT_rich Low_complexity Low_complexity 1 25 0 4078 221 89 113 chr9 23235077 23235239 -119036205 - L1MD3 LINE L1 -1 7981 7817 2047 117 10 7 chr9 23235239 23235546 -119035898 + AluSc SINE Alu 1 308 -1 4078 221 89 113 chr9 23235546 23236104 -119035340 - L1MD3 LINE L1 -165 7817 7247 7576 29 2 0 chr9 23236104 23237700 -119033744 - L1PA3 LINE L1 0 6155 4558 4078 221 89 113 chr9 23237700 23238693 -119032751 - L1MD3 LINE L1 -735 7247 6126 5169 177 78 31 chr9 23238960 23240135 -119031309 + L1M4 LINE L1 19 1248 -5136 1863 254 73 8 chr9 23240500 23241294 -119030150 + L1M4 LINE L1 4379 5224 -1158 1004 208 85 142 chr9 23241440 23242229 -119029215 - MER39-int LTR ERV1 -4196 2135 1392 300 169 56 0 chr9 23242413 23242484 -119028960 - MER39-int LTR ERV1 -4961 1370 1296 * 318 246 93 71 chr9 23242466 23242649 -119028795 - MER39-int LTR ERV1 -6081 250 64 3260 170 64 24 chr9 23242704 23243345 -119028099 - MER39 LTR ERV1 0 707 2 22 35 0 0 chr9 23243957 23243986 -119027458 + AT_rich Low_complexity Low_complexity 1 29 0 302 281 116 30 chr9 23245225 23245389 -119026055 - MIR SINE MIR -3 259 82 21 36 0 0 chr9 23246015 23246043 -119025401 + AT_rich Low_complexity Low_complexity 1 28 0 576 163 0 54 chr9 23246335 23246464 -119024980 - FRAM SINE Alu -1 175 54 269 307 158 13 chr9 23246534 23246762 -119024682 + L2 LINE L2 2076 2336 -978 38 22 0 0 chr9 23247239 23247284 -119024160 + AT_rich Low_complexity Low_complexity 1 45 0 422 225 118 57 chr9 23248252 23248532 -119022912 - MER106B DNA MER1_type -2 1057 761 1543 185 0 0 chr9 23248542 23248829 -119022615 - L1MA3 LINE L1 -6 6299 6013 1827 102 12 0 chr9 23248829 23249084 -119022360 + L1MA2 LINE L1 5616 5873 -431 1627 196 16 68 chr9 23249104 23249544 -119021900 - L1 LINE L1 -2298 5267 4851 584 218 24 0 chr9 23249648 23249813 -119021631 - L1 LINE L1 -2722 4843 4675 2750 173 24 40 chr9 23249816 23250412 -119021032 - L1 LINE L1 -3345 4220 3629 1869 159 0 17 chr9 23250412 23250731 -119020713 - AluSx SINE Alu 0 314 1 2750 173 24 40 chr9 23250731 23251226 -119020218 - L1 LINE L1 -3936 3629 3128 4920 223 32 26 chr9 23252038 23253427 -119018017 + L1 LINE L1 2897 4293 -1853 201 74 0 0 chr9 23253852 23253879 -119017565 + (TG)n Simple_repeat Simple_repeat 2 28 0 206 256 13 0 chr9 23254182 23254260 -119017184 + (TA)n Simple_repeat Simple_repeat 1 79 0 2238 155 56 12 chr9 23254389 23254803 -119016641 - Tigger2a DNA MER2_type -1 433 2 655 64 11 0 chr9 23256191 23256285 -119015159 + AluSg/x SINE Alu 194 288 -22 503 278 119 6 chr9 23256289 23256465 -119014979 + MIR SINE MIR 29 224 -38 375 224 59 110 chr9 23256468 23256687 -119014757 + L1ME3A LINE L1 5944 6151 -19 952 186 0 40 chr9 23256687 23256864 -119014580 - FRAM SINE Alu -7 169 1 560 154 0 0 chr9 23260592 23260683 -119010761 - FRAM SINE Alu -37 139 49 2262 105 3 6 chr9 23262245 23262558 -119008886 - AluSx SINE Alu 0 312 1 204 349 28 9 chr9 23262738 23262847 -119008597 - L2 LINE L2 -1 3271 3161 192 323 65 40 chr9 23262961 23263085 -119008359 + MIR SINE MIR 70 196 -66 2478 99 22 17 chr9 23263130 23263492 -119007952 + THE1B LTR MaLR 1 364 0 1791 193 3 9 chr9 23263709 23264046 -119007398 - MER4D LTR ERV1 -22 881 547 405 254 0 23 chr9 23264044 23264166 -119007278 - MER4E LTR ERV1 -588 284 59 * 1394 162 49 4 chr9 23264155 23264420 -119007024 - MER49 LTR ERV1 -643 280 4 246 230 24 9 chr9 23264433 23264651 -119006793 + (TA)n Simple_repeat Simple_repeat 1 221 0 353 128 39 69 chr9 23264659 23264761 -119006683 + MER96B DNA MER1_type? 79 177 -240 266 317 64 40 chr9 23266698 23266888 -119004556 - MLT1J2 LTR MaLR -2 448 263 282 268 42 0 chr9 23269150 23269221 -119002223 + L2 LINE L2 3223 3296 -17 1734 201 41 27 chr9 23269415 23269968 -119001476 - MLT2A2 LTR ERVL 0 554 1 2532 213 57 57 chr9 23270659 23271715 -118999729 + MER106B DNA MER1_type 3 1058 -1 209 217 0 0 chr9 23272676 23272722 -118998722 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 21 82 0 0 chr9 23272820 23272869 -118998575 + AT_rich Low_complexity Low_complexity 1 49 0 267 338 168 20 chr9 23273212 23273653 -118997791 - L2 LINE L2 -992 2322 1817 43 64 0 0 chr9 23273786 23273864 -118997580 + AT_rich Low_complexity Low_complexity 1 78 0 203 299 124 10 chr9 23274501 23274598 -118996846 + MIR SINE MIR 117 224 -38 1990 108 11 14 chr9 23276015 23276301 -118995143 + THE1A LTR MaLR 71 355 0 3624 209 10 10 chr9 23276301 23277005 -118994439 - L1M1 LINE L1 -6847 718 15 199 54 54 0 chr9 23277699 23277736 -118993708 + A-rich Low_complexity Low_complexity 2 40 0 1454 266 28 30 chr9 23278801 23279233 -118992211 + LTR47B LTR ERVL 11 441 -2 2072 134 13 0 chr9 23281145 23281450 -118989994 + AluSc SINE Alu 1 309 0 277 300 50 40 chr9 23283954 23284154 -118987290 - L2 LINE L2 0 3313 3112 457 361 123 11 chr9 23284234 23284780 -118986664 - L2 LINE L2 -986 2328 1722 553 180 51 73 chr9 23284866 23285044 -118986400 - L1MA9 LINE L1 -9 6303 6130 6524 210 42 3 chr9 23285046 23286413 -118985031 - L1P LINE L1 -1132 5014 3586 198 0 0 0 chr9 23286413 23286435 -118985009 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6524 210 42 3 chr9 23286435 23286525 -118984919 - L1P LINE L1 -2560 3586 3501 2016 126 51 0 chr9 23286525 23286819 -118984625 - AluSx SINE Alu -3 309 1 22727 151 10 8 chr9 23286820 23291162 -118980282 - L1P4 LINE L1 -481 5687 1335 300 27 0 0 chr9 23292108 23292145 -118979299 + (TG)n Simple_repeat Simple_repeat 1 37 0 22 80 0 0 chr9 23293823 23293873 -118977571 + AT_rich Low_complexity Low_complexity 1 50 0 2930 162 10 33 chr9 23294002 23294602 -118976842 - L1 LINE L1 -1416 4730 4145 581 211 10 0 chr9 23294576 23294680 -118976764 + L1M2c LINE L1 1072 1176 -5613 * 28 48 0 0 chr9 23294738 23294780 -118976664 + AT_rich Low_complexity Low_complexity 1 42 0 1432 134 4 11 chr9 23295048 23295310 -118976134 + L1MA4A LINE L1 6044 6303 0 3620 106 4 4 chr9 23296602 23297113 -118974331 + MER9 LTR ERVK 1 511 0 1032 173 92 40 chr9 23297534 23297795 -118973649 + MER31B LTR ERV1 104 378 -88 2191 128 94 8 chr9 23297795 23298179 -118973265 + MSTA LTR MaLR 1 417 -11 389 258 0 0 chr9 23298186 23298279 -118973165 + MER31B LTR ERV1 374 466 0 188 302 16 32 chr9 23299037 23299100 -118972344 + MIR SINE MIR 102 163 -99 182 169 46 77 chr9 23299793 23299858 -118971586 - L2 LINE L2 -1596 1718 1656 2294 219 48 16 chr9 23300034 23300597 -118970847 + MER106B DNA MER1_type 3 583 -476 2096 227 62 25 chr9 23301586 23302226 -118969218 - L1 LINE L1 -1959 4187 3524 21 36 0 0 chr9 23302245 23302273 -118969171 + AT_rich Low_complexity Low_complexity 1 28 0 906 184 64 108 chr9 23302286 23302396 -118969048 + MER106B DNA MER1_type 641 754 -305 1966 123 0 50 chr9 23302396 23302713 -118968731 - AluSg1 SINE Alu -8 301 1 906 184 64 108 chr9 23302713 23303038 -118968406 + MER106B DNA MER1_type 754 1057 -2 24 67 0 0 chr9 23303930 23303975 -118967469 + AT_rich Low_complexity Low_complexity 1 45 0 255 370 133 0 chr9 23304442 23304712 -118966732 - L2 LINE L2 -982 2332 2027 1285 121 59 4 chr9 23304714 23305078 -118966366 + MSTA LTR MaLR 1 427 -1 34 65 0 0 chr9 23305418 23305480 -118965964 + AT_rich Low_complexity Low_complexity 1 62 0 2439 73 0 6 chr9 23305969 23306282 -118965162 + AluY SINE Alu 1 311 0 242 296 129 8 chr9 23306400 23306532 -118964912 + MIR SINE MIR 82 229 -33 1129 128 0 6 chr9 23306538 23306694 -118964750 + AluSq SINE Alu 88 242 -71 369 157 11 22 chr9 23308107 23308196 -118963248 + (TA)n Simple_repeat Simple_repeat 2 89 0 25 83 0 0 chr9 23308202 23308262 -118963182 + AT_rich Low_complexity Low_complexity 1 60 0 2120 121 13 0 chr9 23308266 23308571 -118962873 + AluSx SINE Alu 3 311 -1 3372 180 21 20 chr9 23308856 23309522 -118961922 + MER39 LTR ERV1 1 707 0 272 246 23 100 chr9 23309577 23309707 -118961737 + MER39-int LTR ERV1 64 183 -6148 261 244 39 0 chr9 23309745 23309823 -118961621 + MER39-int LTR ERV1 1302 1382 -4949 1734 185 37 107 chr9 23309957 23310530 -118960914 + MER39-int LTR ERV1 1373 1905 -4426 291 123 185 0 chr9 23310575 23310640 -118960804 - MER31A LTR ERV1 -179 306 230 898 248 5 37 chr9 23310641 23310859 -118960585 + MER39-int LTR ERV1 1925 2135 -4196 2897 201 34 16 chr9 23312940 23313506 -118957938 + MER6 DNA MER2_type 1 576 -289 1243 256 32 17 chr9 23313771 23314128 -118957316 + MER87 LTR ERV1 168 547 -9 562 134 143 10 chr9 23314127 23314248 -118957196 - MSTB1 LTR MaLR -7 405 277 * 2094 156 0 0 chr9 23314765 23315073 -118956371 + AluSx SINE Alu 1 308 -4 1738 178 7 3 chr9 23315469 23315761 -118955683 + AluJb SINE Alu 1 293 -19 220 222 0 48 chr9 23315761 23315817 -118955627 + MIR SINE MIR 208 262 0 1453 165 120 23 chr9 23317719 23318028 -118953416 + MER1B DNA MER1_type 1 339 0 23 33 0 0 chr9 23319026 23319056 -118952388 + AT_rich Low_complexity Low_complexity 1 30 0 221 260 158 8 chr9 23319292 23319419 -118952025 - L2 LINE L2 -64 3249 3104 14280 51 0 0 chr9 23319917 23322489 -118948955 + L1PA6 LINE L1 3578 6153 -1 4510 248 87 15 chr9 23322494 23322857 -118948587 - L1M4 LINE L1 -1528 4618 4283 252 0 0 0 chr9 23322857 23322885 -118948559 + (TG)n Simple_repeat Simple_repeat 1 28 0 4510 248 87 15 chr9 23322885 23324157 -118947287 - L1M4 LINE L1 -1863 4283 2865 2611 153 21 0 chr9 23325579 23325997 -118945447 + MSTA LTR MaLR 1 427 -1 2263 110 54 25 chr9 23326089 23326443 -118945001 - THE1B LTR MaLR 0 364 1 1155 95 60 6 chr9 23326455 23326623 -118944821 - THE1B LTR MaLR -187 177 1 3785 227 12 5 chr9 23326623 23327641 -118943803 - L1PA15-16 LINE L1 -3753 3096 2067 1034 128 44 20 chr9 23327640 23327843 -118943601 - L1PA15-16 LINE L1 -5041 1798 1591 * 1872 155 37 3 chr9 23328482 23328778 -118942666 + AluJb SINE Alu 1 306 -6 406 285 36 31 chr9 23329733 23329926 -118941518 - L1ME3A LINE L1 -142 6028 5835 * 1251 231 169 60 chr9 23329922 23330726 -118940718 - L1ME3A LINE L1 -745 5401 4510 259 285 34 68 chr9 23330924 23331131 -118940313 + LTR52 LTR ERVL 1 200 -221 267 31 0 0 chr9 23331185 23331217 -118940227 + (A)n Simple_repeat Simple_repeat 1 32 0 28 0 0 0 chr9 23331274 23331302 -118940142 + AT_rich Low_complexity Low_complexity 1 28 0 324 180 33 0 chr9 23331518 23331579 -118939865 - MER5B DNA MER1_type 0 178 116 387 303 134 31 chr9 23331971 23332225 -118939219 - L2 LINE L2 -814 2500 2221 419 298 68 29 chr9 23333253 23333458 -118937986 + MLT1J1 LTR MaLR 1 213 -233 353 316 67 27 chr9 23335200 23335425 -118936019 - L1MC/D LINE L1 -2001 5807 5574 22 56 0 0 chr9 23335625 23335661 -118935783 + AT_rich Low_complexity Low_complexity 1 36 0 400 245 151 14 chr9 23335912 23336051 -118935393 - MIR SINE MIR -13 249 92 207 0 0 0 chr9 23336967 23336990 -118934454 + (TG)n Simple_repeat Simple_repeat 2 24 0 194 62 31 0 chr9 23337130 23337162 -118934282 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2380 102 0 0 chr9 23338497 23338810 -118932634 + AluSq SINE Alu 1 313 0 706 281 99 36 chr9 23339513 23339815 -118931629 - LTR16A LTR ERVL -17 433 113 180 0 0 0 chr9 23340027 23340047 -118931397 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 820 201 13 0 chr9 23340331 23340490 -118930954 + MER5A DNA MER1_type 15 175 -14 796 164 0 22 chr9 23340530 23340664 -118930780 - FLAM_C SINE Alu -12 131 1 29 28 0 0 chr9 23340669 23340705 -118930739 + AT_rich Low_complexity Low_complexity 1 36 0 195 42 0 0 chr9 23341371 23341395 -118930049 + (TTA)n Simple_repeat Simple_repeat 2 25 0 279 321 33 87 chr9 23341444 23341628 -118929816 + MIR SINE MIR 23 196 -66 22 88 0 0 chr9 23342391 23342448 -118928996 + AT_rich Low_complexity Low_complexity 1 57 0 686 278 137 32 chr9 23342584 23342815 -118928629 - L1MC4a LINE L1 -1879 5998 5717 2262 92 0 0 chr9 23342815 23343134 -118928310 - AluSg SINE Alu 0 319 1 686 278 137 32 chr9 23343134 23343243 -118928201 - L1MC4a LINE L1 -2160 5717 5621 293 184 184 10 chr9 23343261 23343359 -118928085 - L1MC4a LINE L1 -2381 5496 5382 355 299 80 5 chr9 23345020 23345207 -118926237 + L1ME LINE L1 5622 5822 -299 390 42 0 0 chr9 23346027 23346075 -118925369 + (GA)n Simple_repeat Simple_repeat 1 48 0 2304 263 53 20 chr9 23346320 23348996 -118922448 - L1MEc LINE L1 -3274 2941 27 893 218 62 76 chr9 23349011 23349065 -118922379 + MER58A DNA MER1_type 3 56 -2364 2475 83 0 3 chr9 23349065 23349377 -118922067 - AluY SINE Alu 0 311 1 893 218 62 76 chr9 23349377 23349547 -118921897 + MER58A DNA MER1_type 56 224 0 1158 204 53 39 chr9 23349547 23350033 -118921411 - Zaphod DNA AcHobo -3043 988 496 2886 63 5 10 chr9 23350050 23350464 -118920980 - LTR7 LTR ERV1 -38 412 1 2287 89 54 5 chr9 23350464 23350836 -118920608 - HERVH LTR ERV1 0 7713 7324 1122 175 63 0 chr9 23350836 23351124 -118920320 - HERVH LTR ERV1 -1894 5819 2888 * 17073 81 21 28 chr9 23351123 23353772 -118917672 - HERVH LTR ERV1 -5084 2629 1 289 0 0 0 chr9 23353774 23353808 -118917636 - LTR7 LTR ERV1 -2 448 415 1068 259 144 5 chr9 23353810 23354200 -118917244 - Zaphod DNA AcHobo -3523 508 65 225 312 0 65 chr9 23354255 23354332 -118917112 - Zaphod DNA AcHobo -3958 73 2 190 191 21 43 chr9 23355201 23355248 -118916196 - MIR3 SINE MIR -10 198 153 719 248 100 53 chr9 23355477 23355640 -118915804 + L1MC4 LINE L1 7523 7677 -365 2165 132 0 0 chr9 23355640 23355935 -118915509 + AluSx SINE Alu 3 297 -15 719 248 100 53 chr9 23355935 23356110 -118915334 + L1MC4 LINE L1 7677 7877 -165 789 297 40 12 chr9 23356367 23356616 -118914828 + MIR SINE MIR 4 259 -3 332 233 117 10 chr9 23356873 23356976 -118914468 - L2 LINE L2 0 3313 3200 3518 112 0 50 chr9 23357035 23357590 -118913854 - MER1A DNA MER1_type 0 527 1 2276 106 0 0 chr9 23357779 23358071 -118913373 + AluSq SINE Alu 1 292 -21 386 316 74 63 chr9 23358099 23358466 -118912978 - L2 LINE L2 -1313 2001 1631 210 243 9 140 chr9 23358827 23358934 -118912510 + L2 LINE L2 3221 3313 0 217 303 30 0 chr9 23359439 23359505 -118911939 - MIR SINE MIR 0 262 195 526 220 40 40 chr9 23360048 23360198 -118911246 - MIR SINE MIR -11 251 102 1341 274 98 47 chr9 23360360 23361292 -118910152 + L1MEc LINE L1 36 1014 -5382 220 311 137 38 chr9 23361517 23361729 -118909715 + MIR SINE MIR 20 252 -10 402 56 28 14 chr9 23361835 23361906 -118909538 + (TG)n Simple_repeat Simple_repeat 2 73 0 260 307 67 53 chr9 23362165 23362315 -118909129 + MIR SINE MIR 63 214 -48 219 163 41 20 chr9 23365255 23365304 -118906140 - L2 LINE L2 -2 3311 3262 315 49 0 0 chr9 23366963 23367004 -118904440 + (TG)n Simple_repeat Simple_repeat 2 42 0 189 419 0 0 chr9 23367072 23367165 -118904279 - L2 LINE L2 -13 3300 3208 369 361 130 40 chr9 23367601 23368563 -118902881 - L2 LINE L2 -580 2734 1686 183 359 172 24 chr9 23368639 23368848 -118902596 + L2 LINE L2 2737 2976 -338 189 0 0 0 chr9 23368865 23368886 -118902558 + (T)n Simple_repeat Simple_repeat 1 21 0 227 214 127 48 chr9 23370366 23370492 -118900952 + MER113 DNA MER1_type? 6 141 -380 664 202 8 8 chr9 23370602 23370731 -118900713 - FLAM_A SINE Alu -4 129 1 33 0 0 0 chr9 23370944 23370977 -118900467 + AT_rich Low_complexity Low_complexity 1 33 0 290 331 86 43 chr9 23371524 23371663 -118899781 - MIR3 SINE MIR -61 147 3 208 188 31 0 chr9 23372189 23372253 -118899191 + (TA)n Simple_repeat Simple_repeat 1 66 0 2200 104 0 0 chr9 23372253 23372540 -118898904 - AluSx SINE Alu -25 287 1 428 296 62 40 chr9 23372540 23372716 -118898728 + MER5A DNA MER1_type 10 189 0 305 280 182 0 chr9 23374002 23374145 -118897299 - MIR SINE MIR -92 170 2 736 242 224 52 chr9 23374334 23374759 -118896685 - L2 LINE L2 -9 3304 2807 1556 199 7 10 chr9 23375429 23375720 -118895724 - AluJo SINE Alu -22 290 1 411 289 32 32 chr9 23375732 23375922 -118895522 + L1MC/D LINE L1 5612 5801 -2007 26 0 0 0 chr9 23376054 23376080 -118895364 + AT_rich Low_complexity Low_complexity 1 26 0 1315 188 92 19 chr9 23376794 23377065 -118894379 + AluJo SINE Alu 1 291 -11 232 178 0 0 chr9 23378139 23378202 -118893242 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 200 244 22 0 chr9 23378524 23378569 -118892875 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 21 36 0 0 chr9 23378569 23378597 -118892847 + AT_rich Low_complexity Low_complexity 1 28 0 227 293 38 38 chr9 23379255 23379388 -118892056 - MIR SINE MIR -56 206 74 212 311 66 0 chr9 23379392 23379453 -118891991 - L2 LINE L2 -1 3312 3248 387 346 119 7 chr9 23380385 23380654 -118890790 - L2 LINE L2 -555 2759 2461 1257 211 28 102 chr9 23381560 23381954 -118889490 + MLT1A1 LTR MaLR 1 365 0 385 296 60 50 chr9 23382061 23382260 -118889184 - MIR SINE MIR -41 221 21 229 300 75 80 chr9 23382837 23383037 -118888407 + L2 LINE L2 3067 3265 -7 1749 148 55 6 chr9 23383155 23383480 -118887964 - Tigger1 DNA MER2_type 0 2418 2078 16686 169 27 42 chr9 23383489 23384344 -118887100 - L1PA13 LINE L1 -1 6813 5946 2083 111 45 0 chr9 23384344 23384676 -118886768 - L1PA10 LINE L1 -10 6158 5812 16686 169 27 42 chr9 23384676 23387913 -118883531 - L1PA13 LINE L1 -868 5946 2802 5744 109 66 2 chr9 23387913 23389094 -118882350 - L1PA13 LINE L1 -7 6156 4939 16686 169 27 42 chr9 23389094 23390396 -118881048 - L1PA13 LINE L1 -4012 2802 1482 5695 218 84 3 chr9 23390397 23391637 -118879807 - L1PA13 LINE L1 -5447 1340 1 11524 125 36 41 chr9 23391647 23393744 -118877700 - Tigger1 DNA MER2_type -331 2087 1 455 303 50 75 chr9 23394743 23394984 -118876460 + MIR SINE MIR 12 246 -16 1016 205 24 139 chr9 23395076 23395485 -118875959 + MLT1A2 LTR MaLR 6 367 -7 400 288 28 34 chr9 23397893 23398070 -118873374 + MER5B DNA MER1_type 1 176 -2 187 402 0 12 chr9 23398241 23398323 -118873121 + MIR SINE MIR 38 118 -90 237 393 27 18 chr9 23398922 23399141 -118872303 + LTR33 LTR ERVL 71 291 -230 819 21 0 0 chr9 23399341 23399436 -118872008 + L1PA2 LINE L1 4 98 -6048 * 36832 30 1 0 chr9 23399434 23404676 -118866768 + L1PA2 LINE L1 908 6153 -2 397 272 96 41 chr9 23404975 23405339 -118866105 + L1ME4a LINE L1 5716 6099 -22 255 362 34 34 chr9 23405661 23405810 -118865634 - L2 LINE L2 -214 3058 2910 2115 137 73 14 chr9 23406589 23406933 -118864511 + THE1B LTR MaLR 1 364 0 2282 138 8 8 chr9 23407053 23407431 -118864013 - L1PB3 LINE L1 0 6154 5777 23 33 0 0 chr9 23407865 23407895 -118863549 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr9 23408016 23408036 -118863408 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 24 53 0 0 chr9 23408424 23408462 -118862982 + AT_rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr9 23408662 23408684 -118862760 + (T)n Simple_repeat Simple_repeat 1 22 0 861 212 71 9 chr9 23410841 23411067 -118860377 + MER112 DNA MER1_type 14 253 -7 384 200 83 8 chr9 23411087 23411207 -118860237 - MER117 DNA MER1_type -41 156 28 229 320 39 13 chr9 23411247 23411325 -118860119 + L2 LINE L2 3210 3289 -24 354 225 113 53 chr9 23411675 23411826 -118859618 - MIR SINE MIR -58 204 45 264 59 0 0 chr9 23412149 23412183 -118859261 + (TG)n Simple_repeat Simple_repeat 2 35 0 976 124 214 0 chr9 23412499 23412677 -118858767 + MER20 DNA MER1_type 4 219 0 607 194 50 14 chr9 23412729 23412868 -118858576 + MIR SINE MIR 108 251 -11 233 314 47 0 chr9 23412958 23413044 -118858400 + MER103 DNA DNA 3 92 -74 230 388 29 0 chr9 23413143 23413246 -118858198 + MIR SINE MIR 20 125 -83 21 36 0 0 chr9 23413829 23413857 -118857587 + AT_rich Low_complexity Low_complexity 1 28 0 320 338 96 32 chr9 23415899 23416213 -118855231 + MARNA DNA Mariner 105 438 -148 555 305 72 21 chr9 23416229 23416465 -118854979 + MIR SINE MIR 5 252 -10 28 48 0 0 chr9 23416645 23416687 -118854757 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr9 23417098 23417130 -118854314 + AT_rich Low_complexity Low_complexity 1 32 0 31 0 0 0 chr9 23419136 23419167 -118852277 + AT_rich Low_complexity Low_complexity 1 31 0 317 196 21 21 chr9 23422557 23422654 -118848790 + (CCG)n Simple_repeat Simple_repeat 3 99 0 24 96 0 0 chr9 23424060 23424133 -118847311 + AT_rich Low_complexity Low_complexity 1 73 0 284 227 11 0 chr9 23425144 23425232 -118846212 + (TA)n Simple_repeat Simple_repeat 2 90 0 39 0 0 0 chr9 23425297 23425336 -118846108 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr9 23425845 23425873 -118845571 + AT_rich Low_complexity Low_complexity 1 28 0 229 270 68 0 chr9 23427211 23427285 -118844159 + MER5A DNA MER1_type 34 112 -77 283 340 77 26 chr9 23427694 23427888 -118843556 + MIR SINE MIR 27 230 -32 309 26 0 0 chr9 23427905 23427943 -118843501 + (GA)n Simple_repeat Simple_repeat 1 38 0 185 330 140 0 chr9 23428661 23428761 -118842683 + L2 LINE L2 3141 3254 -18 271 338 0 0 chr9 23429931 23430008 -118841436 - L2 LINE L2 -8 3264 3188 417 273 136 11 chr9 23430624 23430800 -118840644 - MIR SINE MIR -36 226 29 21 0 0 0 chr9 23432459 23432480 -118838964 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 23432897 23432922 -118838522 + AT_rich Low_complexity Low_complexity 1 25 0 383 361 42 24 chr9 23434124 23434290 -118837154 - MIR3 SINE MIR -24 184 16 218 306 12 56 chr9 23434365 23434468 -118836976 + MIR SINE MIR 16 114 -107 * 346 272 225 6 chr9 23434459 23434632 -118836812 - L2 LINE L2 0 3313 3103 711 220 134 9 chr9 23434685 23434917 -118836527 - MIR SINE MIR 0 262 2 429 258 88 92 chr9 23435057 23435340 -118836104 - MLT1K LTR MaLR -2 586 305 538 236 74 69 chr9 23435355 23435558 -118835886 - MIR SINE MIR -41 221 18 294 333 46 9 chr9 23436650 23436758 -118834686 + L2 LINE L2 3153 3264 -8 192 179 0 0 chr9 23437271 23437310 -118834134 + (ATG)n Simple_repeat Simple_repeat 1 39 0 848 258 83 17 chr9 23437313 23437553 -118833891 - MIR SINE MIR -1 261 6 538 272 118 18 chr9 23437812 23438091 -118833353 + L1MC5 LINE L1 7606 7912 -49 387 0 0 0 chr9 23438161 23438204 -118833240 + (TG)n Simple_repeat Simple_repeat 2 44 0 1431 179 0 12 chr9 23438205 23438451 -118832993 - AluJb SINE Alu -31 281 39 431 287 86 6 chr9 23438648 23438822 -118832622 + MIR SINE MIR 61 248 -14 214 322 167 52 chr9 23439664 23439934 -118831510 - L3 LINE CR1 -5 1572 1272 558 346 51 8 chr9 23440254 23440508 -118830936 - L3 LINE CR1 -399 1178 914 233 266 44 26 chr9 23440938 23441051 -118830393 - L1ME LINE L1 -371 5750 5636 27 0 0 0 chr9 23441135 23441162 -118830282 + AT_rich Low_complexity Low_complexity 1 27 0 315 246 33 25 chr9 23441178 23441300 -118830144 - L1ME LINE L1 -2358 5450 5328 387 60 0 0 chr9 23441734 23441784 -118829660 + (TG)n Simple_repeat Simple_repeat 1 50 0 205 347 14 0 chr9 23442247 23442319 -118829125 - L2 LINE L2 0 3272 3200 270 150 0 70 chr9 23443550 23443650 -118827794 + (GAAAA)n Simple_repeat Simple_repeat 2 94 0 2544 67 0 3 chr9 23443917 23444231 -118827213 + AluSq SINE Alu 1 313 0 1841 37 0 0 chr9 23444726 23444942 -118826502 - AluY SINE Alu 0 311 96 1519 181 32 7 chr9 23445070 23445351 -118826093 - AluJb SINE Alu -22 290 3 186 43 0 0 chr9 23445396 23445419 -118826025 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1148 245 19 0 chr9 23446835 23447092 -118824352 + MIR SINE MIR 1 262 0 679 161 32 0 chr9 23447396 23447520 -118823924 - FLAM_A SINE Alu -2 131 4 418 322 0 55 chr9 23447883 23448082 -118823362 - MER5A DNA MER1_type 0 189 2 203 274 132 57 chr9 23448877 23448983 -118822461 - L2 LINE L2 -7 3265 3152 207 0 0 0 chr9 23449587 23449610 -118821834 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 476 289 31 19 chr9 23449975 23450180 -118821264 - MIR SINE MIR -24 238 30 222 313 69 62 chr9 23450580 23450740 -118820704 + MIR SINE MIR 91 251 -11 330 337 11 0 chr9 23450768 23450863 -118820581 - L2 LINE L2 -4 3309 3214 406 352 21 0 chr9 23450981 23451123 -118820321 - MIR SINE MIR -109 153 9 542 288 78 78 chr9 23451308 23451756 -118819688 - L2 LINE L2 -1 3312 2865 257 266 57 32 chr9 23451968 23452092 -118819352 - LTR33A LTR ERVL 0 523 397 527 252 49 28 chr9 23452233 23452376 -118819068 - LTR33 LTR ERVL -352 169 24 458 255 28 117 chr9 23452431 23452678 -118818766 - LTR33 LTR ERVL -294 227 3 224 288 108 0 chr9 23453696 23453807 -118817637 + L3b LINE CR1 1219 1341 -242 188 286 32 32 chr9 23453819 23453882 -118817562 - L2 LINE L2 -14 3258 3196 198 103 0 0 chr9 23455238 23455267 -118816177 + (A)n Simple_repeat Simple_repeat 1 29 0 268 333 0 56 chr9 23455801 23455909 -118815535 + L2 LINE L2 3211 3312 -1 4521 170 54 20 chr9 23456669 23458118 -118813326 - L1MB3 LINE L1 -10 6173 4675 236 264 55 0 chr9 23458857 23458948 -118812496 - MLT1J LTR MaLR -341 170 75 348 302 8 43 chr9 23459270 23459418 -118812026 + MIR SINE MIR 20 162 -46 238 200 0 0 chr9 23460659 23460699 -118810745 + MIR SINE MIR 218 257 -5 222 373 20 10 chr9 23460867 23460969 -118810475 - MIR SINE MIR -84 124 22 2196 85 0 4 chr9 23461099 23461380 -118810064 + AluSg SINE Alu 26 305 -5 371 258 45 76 chr9 23461853 23461985 -118809459 - MIR SINE MIR -1 261 134 366 313 80 42 chr9 23462012 23462256 -118809188 - MIR SINE MIR -11 251 5 1961 147 3 0 chr9 23462611 23462911 -118808533 + AluSq SINE Alu 1 301 -12 443 143 0 12 chr9 23462934 23463018 -118808426 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 510 282 98 0 chr9 23463074 23463237 -118808207 + MIR SINE MIR 3 181 -81 389 316 137 38 chr9 23463505 23464010 -118807434 - L2 LINE L2 -8 3264 2685 252 216 102 23 chr9 23464782 23464870 -118806574 - MER103 DNA DNA -36 130 36 294 219 0 92 chr9 23464938 23465057 -118806387 - L1MC4 LINE L1 -29 8013 5970 28 29 0 0 chr9 23465238 23465273 -118806171 + AT_rich Low_complexity Low_complexity 1 35 0 823 281 35 31 chr9 23465332 23465724 -118805720 - L1MC4 LINE L1 -375 5787 5395 23 68 0 0 chr9 23465970 23466014 -118805430 + AT_rich Low_complexity Low_complexity 1 44 0 188 238 29 124 chr9 23466427 23466532 -118804912 - L2 LINE L2 -1 3312 3218 299 330 147 0 chr9 23466534 23466643 -118804801 - L2 LINE L2 0 3272 3148 493 283 159 68 chr9 23469414 23469828 -118801616 - MLT1H LTR MaLR -16 533 82 732 115 0 0 chr9 23469929 23470042 -118801402 + (GGAA)n Simple_repeat Simple_repeat 2 114 0 338 328 13 9 chr9 23470465 23470598 -118800846 + MIR SINE MIR 14 150 -58 4036 89 11 0 chr9 23472038 23472586 -118798858 + MER41A LTR ERV1 1 554 0 500 316 14 46 chr9 23472608 23472826 -118798618 - MIR SINE MIR -48 214 4 2500 71 0 6 chr9 23473049 23473360 -118798084 - AluSp SINE Alu -4 309 1 2513 58 0 7 chr9 23475357 23475665 -118795779 + AluY SINE Alu 1 306 -5 227 345 132 11 chr9 23475676 23475850 -118795594 - MIR3 SINE MIR -9 199 5 2108 126 7 0 chr9 23475852 23476161 -118795283 - AluSx SINE Alu -1 311 1 21 0 0 0 chr9 23476841 23476862 -118794582 + AT_rich Low_complexity Low_complexity 1 21 0 870 170 0 77 chr9 23477039 23477221 -118794223 - FRAM SINE Alu -16 160 1 2461 180 45 17 chr9 23477322 23477838 -118793606 + L1MC3 LINE L1 7250 7779 -6 202 220 20 0 chr9 23477871 23477921 -118793523 - L2 LINE L2 -290 2982 2932 274 330 11 23 chr9 23478043 23478131 -118793313 + MIR SINE MIR 20 106 -102 195 42 0 0 chr9 23478148 23478172 -118793272 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 202 271 0 0 chr9 23478619 23478667 -118792777 + MIR SINE MIR 104 151 -111 979 249 20 101 chr9 23478996 23479434 -118792010 + L2 LINE L2 2911 3313 0 2436 60 3 16 chr9 23479569 23479883 -118791561 - AluY SINE Alu -1 310 1 512 229 0 0 chr9 23480300 23480405 -118791039 - L1PB4 LINE L1 -33 6123 6019 587 53 0 0 chr9 23480842 23480917 -118790527 + AluY SINE Alu 11 85 -225 618 178 51 0 chr9 23481065 23481183 -118790261 + L2 LINE L2 3190 3313 0 280 301 32 45 chr9 23481419 23481575 -118789869 - L1ME3A LINE L1 -52 6118 5965 227 287 85 23 chr9 23481624 23481640 -118789804 - L1MA1 LINE L1 -336 5966 5951 380 167 153 40 chr9 23481640 23481790 -118789654 - L1ME3A LINE L1 -214 5956 5790 583 309 28 6 chr9 23482110 23482291 -118789153 + MIR SINE MIR 4 188 -74 201 190 13 152 chr9 23482322 23482401 -118789043 - MIR SINE MIR -16 246 179 1384 198 12 6 chr9 23483096 23483415 -118788029 + MER33 DNA MER1_type 1 321 -3 432 282 135 6 chr9 23483600 23483770 -118787674 - MIR SINE MIR -70 192 1 393 102 0 0 chr9 23484273 23484332 -118787112 + (GA)n Simple_repeat Simple_repeat 1 59 0 1685 211 91 40 chr9 23484439 23484826 -118786618 + MLT2B2 LTR ERVL 1 367 -148 2167 138 11 8 chr9 23484826 23485180 -118786264 - THE1A LTR MaLR 0 355 1 11308 91 19 6 chr9 23485181 23486740 -118784704 - THE1A-int LTR MaLR -1 1579 1 2192 130 14 8 chr9 23486740 23487093 -118784351 - THE1A LTR MaLR 0 355 1 1685 211 91 40 chr9 23487093 23487129 -118784315 + MLT2B2 LTR ERVL 366 449 -66 446 0 19 0 chr9 23487209 23487263 -118784181 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 21 71 0 0 chr9 23487423 23487465 -118783979 + AT_rich Low_complexity Low_complexity 1 42 0 222 156 0 0 chr9 23488149 23488194 -118783250 + (CA)n Simple_repeat Simple_repeat 2 46 0 343 293 58 97 chr9 23489143 23489402 -118782042 + L1MEd LINE L1 1 249 -5870 473 304 7 0 chr9 23489559 23489694 -118781750 - MER63 DNA MER1_type -74 762 1 713 186 0 0 chr9 23489961 23490079 -118781365 + MLT1A1 LTR MaLR 170 287 -78 17260 192 19 15 chr9 23490529 23491527 -118779917 + L1PA15 LINE L1 1924 2916 -3952 2324 203 19 72 chr9 23491527 23492112 -118779332 + MLT2B3 LTR ERVL 1 554 0 17260 192 19 15 chr9 23492112 23494539 -118776905 + L1PA15 LINE L1 2916 5386 -1482 2329 91 0 3 chr9 23494539 23494836 -118776608 + AluSx SINE Alu 1 296 -16 17260 192 19 15 chr9 23494836 23496326 -118775118 + L1PA15 LINE L1 5386 6868 0 1736 191 30 0 chr9 23496341 23496801 -118774643 + AluJb SINE Alu 3 471 0 650 189 85 20 chr9 23496802 23496955 -118774489 + L1MC4 LINE L1 6838 7000 -1042 * 738 296 67 3 chr9 23496941 23497225 -118774219 + L1ME1 LINE L1 5773 6074 -92 1050 246 132 24 chr9 23497249 23497740 -118773704 + L1M4 LINE L1 2315 2858 -3288 362 179 60 15 chr9 23497771 23497838 -118773606 + MER21B LTR ERV1 27 96 -767 251 252 107 48 chr9 23497879 23497982 -118773462 + MER21B LTR ERV1 87 195 -668 553 255 35 86 chr9 23497990 23498304 -118773140 + L1M4 LINE L1 3473 3770 -2376 881 197 74 77 chr9 23498317 23498627 -118772817 + Charlie4a DNA MER1_type 200 508 0 740 275 55 50 chr9 23498630 23499027 -118772417 + HAL1 LINE L1 750 1148 -1359 * 4262 161 136 77 chr9 23499024 23499080 -118772364 + L1MC3 LINE L1 6532 6583 -1202 297 51 0 0 chr9 23499080 23499119 -118772325 + (CA)n Simple_repeat Simple_repeat 2 40 0 4262 161 136 77 chr9 23499119 23499365 -118772079 + L1MC3 LINE L1 6583 6813 -972 342 0 0 0 chr9 23499365 23499403 -118772041 + (CA)n Simple_repeat Simple_repeat 2 39 0 4262 161 136 77 chr9 23499403 23499623 -118771821 + L1MC3 LINE L1 6813 7019 -766 265 274 27 0 chr9 23499623 23499696 -118771748 + MLT1F1 LTR MaLR 51 125 -442 4262 161 136 77 chr9 23499696 23499958 -118771486 + L1MC3 LINE L1 7019 7264 -521 246 32 0 0 chr9 23499958 23499989 -118771455 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4262 161 136 77 chr9 23499989 23500313 -118771131 + L1MC3 LINE L1 7264 7785 0 568 294 86 39 chr9 23500429 23500892 -118770552 + L1M4 LINE L1 2346 2830 -3316 189 0 0 0 chr9 23501510 23501531 -118769913 + (T)n Simple_repeat Simple_repeat 1 21 0 372 94 0 0 chr9 23501918 23501971 -118769473 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1002 119 6 11 chr9 23501972 23502149 -118769295 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 2834 7 0 0 chr9 23502864 23503169 -118768275 + AluYa5 SINE Alu 1 305 -6 298 265 173 19 chr9 23503179 23503659 -118767785 + L1M4 LINE L1 2852 3405 -2741 6209 152 38 11 chr9 23503668 23505678 -118765766 + L1MA2 LINE L1 4208 6304 0 597 343 22 11 chr9 23505729 23506091 -118765353 + L1M4 LINE L1 3472 3837 -2309 459 136 0 0 chr9 23506397 23506478 -118764966 - L1MA5A LINE L1 -3 6294 6214 724 336 52 12 chr9 23506822 23507146 -118764298 + ERVL LTR ERVL 4509 4845 -919 547 277 135 30 chr9 23507375 23507671 -118763773 + LTR16A LTR ERVL 83 409 -41 358 351 53 0 chr9 23507853 23507984 -118763460 - L2 LINE L2 -1 3271 3134 23 33 0 0 chr9 23508051 23508081 -118763363 + AT_rich Low_complexity Low_complexity 1 30 0 2012 53 89 60 chr9 23508130 23508432 -118763012 + AluY SINE Alu 1 311 0 30504 116 11 65 chr9 23508535 23515010 -118756434 - L1PA7 LINE L1 0 6154 35 264 387 57 21 chr9 23515054 23515389 -118756055 - L2 LINE L2 -226 3046 2701 291 314 81 32 chr9 23515402 23515526 -118755918 + MIR3 SINE MIR 28 157 -51 242 360 0 0 chr9 23515786 23515886 -118755558 - MIR SINE MIR 0 262 163 447 331 53 0 chr9 23516360 23516511 -118754933 + MIR SINE MIR 95 253 -9 2335 84 0 0 chr9 23516798 23517085 -118754359 - AluY SINE Alu -12 299 13 2519 190 11 50 chr9 23517199 23517735 -118753709 - MLT2B2 LTR ERVL 0 515 1 1327 204 117 0 chr9 23518330 23518595 -118752849 - AluJb SINE Alu -4 298 3 911 210 6 0 chr9 23519747 23519923 -118751521 + MER5B DNA MER1_type 2 178 0 233 363 22 0 chr9 23519935 23520026 -118751418 + MLT1L LTR MaLR 176 268 -347 315 233 58 19 chr9 23520149 23520252 -118751192 + MLT1L LTR MaLR 505 611 -4 426 279 7 78 chr9 23520308 23520462 -118750982 + MER5A DNA MER1_type 5 158 -31 312 347 16 0 chr9 23520545 23520666 -118750778 - MIR3 SINE MIR -10 198 76 231 125 0 0 chr9 23522613 23522653 -118748791 + (CA)n Simple_repeat Simple_repeat 2 41 0 441 239 168 7 chr9 23522854 23523009 -118748435 - MIR SINE MIR -4 258 79 24 67 0 0 chr9 23524221 23524266 -118747178 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr9 23524780 23524808 -118746636 + AT_rich Low_complexity Low_complexity 1 28 0 7053 40 7 0 chr9 23524811 23525683 -118745761 - L1PA4 LINE L1 -8 6147 5270 429 272 74 37 chr9 23525683 23525845 -118745599 + MER5A DNA MER1_type 22 189 0 211 237 105 35 chr9 23526027 23526141 -118745303 + MIR SINE MIR 71 192 -70 1692 192 3 3 chr9 23527137 23527429 -118744015 + AluJo SINE Alu 5 296 -16 2134 103 31 0 chr9 23527506 23527798 -118743646 + AluSg SINE Alu 1 301 -9 526 306 50 54 chr9 23528578 23528836 -118742608 - MIR SINE MIR 0 262 6 1544 65 0 0 chr9 23529087 23529272 -118742172 + AluY SINE Alu 1 185 -126 611 117 0 0 chr9 23529272 23529366 -118742078 + AluY SINE Alu 218 311 0 868 343 116 11 chr9 23529572 23529951 -118741493 - MER115 DNA AcHobo -237 456 38 215 361 83 15 chr9 23529973 23530106 -118741338 - MIR3 SINE MIR -63 145 4 448 323 16 0 chr9 23531672 23531799 -118739645 - MER5A DNA MER1_type 0 189 61 504 115 0 82 chr9 23531822 23531944 -118739500 - L1MA8 LINE L1 -2 6289 6178 4099 132 19 23 chr9 23531970 23532696 -118738748 - L1MA8 LINE L1 -31 6260 5538 2077 123 0 7 chr9 23533702 23534013 -118737431 + AluSq SINE Alu 1 309 0 255 174 43 0 chr9 23536376 23536422 -118735022 + HSMAR1 DNA Mariner 4 51 -1236 2272 104 0 3 chr9 23536450 23536749 -118734695 + AluY SINE Alu 1 298 -13 358 343 65 5 chr9 23536749 23536965 -118734479 - L2 LINE L2 -534 2780 2552 1286 233 49 6 chr9 23537032 23537358 -118734086 - MER58B DNA MER1_type 0 341 2 369 337 87 17 chr9 23538117 23538289 -118733155 - MIR SINE MIR -77 185 2 293 366 0 0 chr9 23538290 23538383 -118733061 + MIR3 SINE MIR 110 202 -6 213 250 0 0 chr9 23539158 23539218 -118732226 + GA-rich Low_complexity Low_complexity 1 60 0 2059 123 3 0 chr9 23539822 23540115 -118731329 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr9 23540997 23541018 -118730426 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 23541548 23541570 -118729874 + AT_rich Low_complexity Low_complexity 1 22 0 1391 214 106 101 chr9 23542444 23543432 -118728012 - Charlie2 DNA MER1_type 0 2862 1870 289 259 111 9 chr9 23543455 23543656 -118727788 - Charlie2 DNA MER1_type -2496 286 1 318 318 56 32 chr9 23543808 23543934 -118727510 + MIR3 SINE MIR 8 136 -72 29 60 0 0 chr9 23544095 23544145 -118727299 + AT_rich Low_complexity Low_complexity 1 50 0 188 229 33 0 chr9 23544261 23544322 -118727122 + GA-rich Low_complexity Low_complexity 1 63 0 267 250 0 0 chr9 23545062 23545122 -118726322 + (CA)n Simple_repeat Simple_repeat 2 61 0 334 306 169 0 chr9 23545484 23545667 -118725777 - MIR SINE MIR 0 262 49 1169 176 189 47 chr9 23546089 23546448 -118724996 + MER45B DNA AcHobo 519 928 -112 593 301 53 31 chr9 23546900 23547126 -118724318 - MIR SINE MIR -4 258 28 225 186 85 0 chr9 23548808 23548867 -118722577 + LTR33A LTR ERVL 450 513 -10 1489 260 50 32 chr9 23549830 23550346 -118721098 - L2 LINE L2 -2 3311 2776 235 239 120 65 chr9 23550417 23550509 -118720935 + Charlie8 DNA MER1_type 152 248 -2169 1820 161 0 57 chr9 23550511 23550828 -118720616 - AluJb SINE Alu -13 299 1 809 262 59 45 chr9 23552312 23552663 -118718781 - LTR16A LTR ERVL -6 444 1 182 308 19 19 chr9 23552784 23552836 -118718608 + MIR SINE MIR 32 83 -179 1798 190 137 24 chr9 23552840 23553624 -118717820 - MER45B DNA AcHobo 0 1040 123 370 281 36 50 chr9 23553672 23553811 -118717633 + MIR SINE MIR 77 213 -49 263 241 0 0 chr9 23554015 23554069 -118717375 - L2 LINE L2 -5 3308 3255 376 289 152 46 chr9 23554098 23554295 -118717149 + L2 LINE L2 3055 3272 0 350 305 67 60 chr9 23554304 23554619 -118716825 - L2 LINE L2 -989 2325 2009 288 379 63 25 chr9 23555135 23555502 -118715942 - L2 LINE L2 -1972 1342 962 535 329 28 24 chr9 23555517 23555766 -118715678 - MIR SINE MIR -10 252 3 279 0 0 0 chr9 23559882 23559913 -118711531 + (TA)n Simple_repeat Simple_repeat 1 31 0 11026 35 23 0 chr9 23559913 23562038 -118709406 - L1PA5 LINE L1 0 6154 3999 1769 52 5 0 chr9 23562039 23562252 -118709192 + 7SLRNA srpRNA srpRNA 18 231 -89 27 49 0 0 chr9 23562383 23562424 -118709020 + AT_rich Low_complexity Low_complexity 1 41 0 1449 213 27 43 chr9 23562881 23563257 -118708187 - MLT1A2 LTR MaLR -4 370 1 23 0 0 0 chr9 23563259 23563282 -118708162 + AT_rich Low_complexity Low_complexity 1 23 0 392 282 0 12 chr9 23563350 23563435 -118708009 - MER5B DNA MER1_type -45 133 50 2445 230 102 14 chr9 23563557 23564447 -118706997 - L1ME2 LINE L1 -8 6156 5179 213 119 0 0 chr9 23565450 23565492 -118705952 + (A)n Simple_repeat Simple_repeat 1 42 0 435 274 130 43 chr9 23565918 23566148 -118705296 + MIR SINE MIR 12 261 -1 23 0 0 0 chr9 23566725 23566748 -118704696 + AT_rich Low_complexity Low_complexity 1 23 0 6510 16 0 3 chr9 23567620 23568368 -118703076 + L1PA3 LINE L1 5408 6153 -2 230 132 19 0 chr9 23568377 23568430 -118703014 + A-rich Low_complexity Low_complexity 3 56 0 510 300 73 85 chr9 23568823 23569140 -118702304 - L2 LINE L2 0 3272 2960 2265 117 10 0 chr9 23570186 23570495 -118700949 - AluSx SINE Alu 0 312 1 243 250 29 0 chr9 23571766 23571834 -118699610 + MLT1J1 LTR MaLR 2 71 -375 384 253 151 14 chr9 23571872 23572018 -118699426 + MLT1J2 LTR MaLR 151 316 -134 425 351 7 23 chr9 23572404 23572593 -118698851 + MIR3 SINE MIR 22 207 -1 334 241 154 41 chr9 23572882 23573043 -118698401 + MIR SINE MIR 9 252 -10 193 385 54 27 chr9 23573071 23573219 -118698225 + L2 LINE L2 3121 3272 0 527 188 61 91 chr9 23573414 23573579 -118697865 + MER5B DNA MER1_type 18 177 -1 338 104 0 0 chr9 23573690 23573738 -118697706 - MLT2D LTR ERVL 0 397 350 223 246 0 15 chr9 23573741 23573806 -118697638 + (TG)n Simple_repeat Simple_repeat 1 64 0 1759 180 23 12 chr9 23573862 23574207 -118697237 - MLT2D LTR ERVL -50 364 16 21 36 0 0 chr9 23576268 23576296 -118695148 + AT_rich Low_complexity Low_complexity 1 28 0 1322 25 0 0 chr9 23576488 23576645 -118694799 + L1PA3 LINE L1 5998 6154 -1 2237 149 20 78 chr9 23576659 23576695 -118694749 - MSTA LTR MaLR -4 424 387 2086 142 0 0 chr9 23576695 23576983 -118694461 + AluSx SINE Alu 1 288 -24 2237 149 20 78 chr9 23576983 23577396 -118694048 - MSTA LTR MaLR -41 387 1 9622 173 6 3 chr9 23577396 23579042 -118692402 - MSTA-int LTR MaLR 0 1651 1 452 324 8 191 chr9 23579042 23579298 -118692146 - MSTA LTR MaLR 0 426 218 1452 174 39 0 chr9 23579314 23579595 -118691849 + MSTA LTR MaLR 137 428 0 1945 194 2 12 chr9 23579596 23580019 -118691425 + L1PB3 LINE L1 3420 3838 -2308 * 5075 154 33 1 chr9 23580012 23581700 -118689744 + L1PB3 LINE L1 4407 6147 -7 491 271 29 59 chr9 23582032 23582202 -118689242 + MER5A DNA MER1_type 4 168 -21 215 348 142 21 chr9 23582225 23582366 -118689078 + MER5A DNA MER1_type 27 184 -5 363 190 46 155 chr9 23582860 23583034 -118688410 + MIR SINE MIR 53 208 0 405 296 193 11 chr9 23583835 23584011 -118687433 + MIR SINE MIR 1 208 -54 363 317 32 0 chr9 23584023 23584146 -118687298 - L2 LINE L2 0 3313 3187 23 54 0 0 chr9 23584228 23584265 -118687179 + AT_rich Low_complexity Low_complexity 1 37 0 861 256 14 23 chr9 23584450 23584669 -118686775 + MIR SINE MIR 2 218 -44 375 207 0 35 chr9 23584620 23584707 -118686737 - MIR SINE MIR -44 218 135 * 2837 54 13 3 chr9 23584747 23585119 -118686325 + L1PA5 LINE L1 5775 6150 -4 412 142 65 7 chr9 23585210 23585365 -118686079 + (TA)n Simple_repeat Simple_repeat 2 165 0 884 204 44 40 chr9 23585389 23585639 -118685805 - MER63C DNA MER1_type -420 510 260 202 273 0 0 chr9 23586072 23586116 -118685328 - MIR3 SINE MIR -14 194 151 293 231 58 10 chr9 23586951 23587055 -118684389 + MER103 DNA DNA 58 166 0 788 344 122 34 chr9 23587466 23587830 -118683614 - L2 LINE L2 -6 3266 2936 1714 142 25 14 chr9 23587830 23588105 -118683339 + AluSx SINE Alu 21 298 -14 788 344 122 34 chr9 23588105 23588482 -118682962 - L2 LINE L2 -336 2936 2458 22 35 0 0 chr9 23588804 23588833 -118682611 + AT_rich Low_complexity Low_complexity 1 29 0 2086 122 0 7 chr9 23589127 23589422 -118682022 + AluSx SINE Alu 1 293 -19 1258 123 20 5 chr9 23589466 23589669 -118681775 - AluSg/x SINE Alu -2 308 103 5602 70 5 5 chr9 23589669 23590436 -118681008 + LTR17 LTR ERV1 1 767 -13 1813 192 68 13 chr9 23590579 23591037 -118680407 - L1MDa LINE L1 -4237 2303 1821 812 255 21 43 chr9 23591429 23591690 -118679754 - MIR SINE MIR 0 262 12 689 305 136 36 chr9 23591892 23592369 -118679075 - L2 LINE L2 -2 3311 2776 718 250 46 0 chr9 23592415 23592631 -118678813 - L1MB7 LINE L1 -24 6160 5935 2383 58 15 0 chr9 23592631 23592973 -118678471 + L1P LINE L1 2266 2612 -3534 8886 166 47 6 chr9 23593077 23596335 -118675109 + L1PBa LINE L1 1333 4728 -2134 696 77 48 0 chr9 23596335 23596439 -118675005 + AluY SINE Alu 1 109 -202 15080 72 14 0 chr9 23596586 23598689 -118672755 - L1P LINE L1 -3808 2338 206 186 208 146 0 chr9 23598966 23599014 -118672430 + L2 LINE L2 3257 3311 -2 226 265 108 48 chr9 23599126 23599292 -118672152 - MLT-int LTR MaLR -656 1079 904 303 292 92 79 chr9 23600056 23600149 -118671295 - MIR SINE MIR 0 262 172 2033 174 36 71 chr9 23600149 23600672 -118670772 + MLT1D LTR MaLR 1 505 0 303 292 92 79 chr9 23600672 23600818 -118670626 - MIR SINE MIR -90 172 20 991 118 70 5 chr9 23601000 23601186 -118670258 + MSTA LTR MaLR 1 198 -230 1291 122 210 30 chr9 23601186 23601448 -118669996 + AluSg1 SINE Alu 1 309 0 2455 90 0 0 chr9 23601455 23601765 -118669679 + AluSq SINE Alu 1 310 -3 2191 120 0 0 chr9 23601767 23602059 -118669385 + AluSq SINE Alu 1 292 -21 217 185 167 0 chr9 23602163 23602217 -118669227 + L2 LINE L2 2125 2187 -1127 1215 236 129 70 chr9 23602218 23603093 -118668351 + L2 LINE L2 2370 3306 -7 1058 141 120 43 chr9 23603187 23603418 -118668026 - Charlie5 DNA MER1_type 0 2624 2359 2186 113 23 0 chr9 23603418 23603719 -118667725 - AluSx SINE Alu -4 308 1 1058 141 120 43 chr9 23603719 23603813 -118667631 - Charlie5 DNA MER1_type -265 2359 2274 540 134 21 0 chr9 23603837 23603934 -118667510 - MER3 DNA MER1_type -41 168 70 261 324 266 21 chr9 23603962 23604252 -118667192 + L2 LINE L2 2899 3259 -13 1950 123 14 20 chr9 23604683 23604975 -118666469 + AluSq SINE Alu 2 291 -22 1436 187 13 38 chr9 23605982 23606297 -118665147 + MLT1A1 LTR MaLR 1 307 -58 5098 123 38 6 chr9 23606397 23608187 -118663257 + L1PA14 LINE L1 182 2258 -4605 1750 86 71 0 chr9 23608191 23608458 -118662986 - L1PBa LINE L1 -4355 2508 2223 3014 196 8 0 chr9 23608460 23609113 -118662331 + L1 LINE L1 2944 3601 -3261 * 3862 194 26 19 chr9 23609112 23609414 -118662030 + L1PA4 LINE L1 4197 4495 -1656 5318 49 3 3 chr9 23609414 23610086 -118661358 + L1PA4 LINE L1 5483 6154 -1 3862 194 26 19 chr9 23610086 23611200 -118660244 + L1PA4 LINE L1 4495 5617 -534 19248 50 6 1 chr9 23611300 23614602 -118656842 + L1PA5 LINE L1 2816 6131 -23 275 107 53 40 chr9 23614616 23614691 -118656753 + GA-rich Low_complexity Low_complexity 1 76 0 744 115 5 11 chr9 23614691 23614824 -118656620 - THE1C LTR MaLR -25 350 212 9539 145 19 2 chr9 23614959 23617295 -118654149 + L1PA14 LINE L1 4278 6652 -225 6021 214 31 34 chr9 23617397 23617951 -118653493 + L1P LINE L1 3111 3665 -2481 243 0 0 0 chr9 23617951 23617978 -118653466 + (CA)n Simple_repeat Simple_repeat 2 28 0 6021 214 31 34 chr9 23617978 23618532 -118652912 + L1P LINE L1 3665 4219 -1927 2020 41 4 0 chr9 23618532 23618777 -118652667 + L1PA5 LINE L1 5903 6148 -6 6021 214 31 34 chr9 23618777 23619343 -118652101 + L1P LINE L1 4219 4781 -1365 3113 138 52 0 chr9 23619385 23619906 -118651538 + L1P LINE L1 11 558 -5588 * 16505 51 15 1 chr9 23619904 23622134 -118649310 + L1P LINE L1 2607 4867 -1279 218 229 213 0 chr9 23622344 23622405 -118649039 - MIR3 SINE MIR -15 193 120 1532 193 35 3 chr9 23622800 23623090 -118648354 + AluJo SINE Alu 1 299 -13 516 144 22 0 chr9 23624920 23625010 -118646434 + AluY SINE Alu 218 309 -2 550 203 51 13 chr9 23625546 23625704 -118645740 - Charlie5 DNA MER1_type 0 2616 2453 259 311 40 0 chr9 23625832 23625906 -118645538 - L3 LINE CR1 -435 1142 1066 278 287 27 27 chr9 23626217 23626367 -118645077 - L1MC/D LINE L1 -1946 5862 5713 773 214 154 15 chr9 23626571 23628405 -118643039 + L1ME2 LINE L1 3674 5866 -298 1794 108 28 14 chr9 23628760 23629047 -118642397 - THE1C LTR MaLR 0 375 85 360 0 0 0 chr9 23729713 23729753 -118541691 + (GA)n Simple_repeat Simple_repeat 1 40 0 301 282 178 19 chr9 23729806 23730019 -118541425 - L1ME LINE L1 -276 5845 5599 1614 101 55 5 chr9 23730297 23730516 -118540928 - MER30 DNA MER1_type 0 230 1 25 90 0 0 chr9 23731793 23731860 -118539584 + AT_rich Low_complexity Low_complexity 1 67 0 369 0 0 0 chr9 23732901 23732942 -118538502 + (TG)n Simple_repeat Simple_repeat 2 42 0 293 68 23 0 chr9 23733594 23733638 -118537806 + (CCCCCA)n Simple_repeat Simple_repeat 4 48 0 233 281 191 56 chr9 23735491 23735758 -118535686 + L2 LINE L2 2951 3253 -60 274 130 43 0 chr9 23736033 23736079 -118535365 - MLT2D LTR ERVL 0 414 367 227 232 12 73 chr9 23736096 23736119 -118535325 + (TATATG)n Simple_repeat Simple_repeat 1 24 -53 1588 138 50 133 chr9 23736119 23736495 -118534949 - MER7A DNA MER2_type -2 344 2 227 232 12 73 chr9 23736495 23736553 -118534891 + (TATATG)n Simple_repeat Simple_repeat 24 77 0 366 80 0 0 chr9 23736556 23736606 -118534838 + (GA)n Simple_repeat Simple_repeat 1 50 0 1977 135 94 18 chr9 23736607 23736947 -118534497 - MLT2D LTR ERVL -48 366 1 383 328 77 8 chr9 23737419 23737604 -118533840 - MIR SINE MIR -56 206 16 264 279 182 36 chr9 23738125 23738418 -118533026 + L1MC4a LINE L1 5380 5720 -401 304 254 15 0 chr9 23738510 23738644 -118532800 + (TA)n Simple_repeat Simple_repeat 2 137 0 358 258 84 105 chr9 23738843 23739177 -118532267 + L1MC4a LINE L1 5776 6102 -19 311 267 50 51 chr9 23739184 23739309 -118532135 - MER5B DNA MER1_type -51 138 4 22 35 0 0 chr9 23739827 23739856 -118531588 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr9 23742001 23742026 -118529418 + AT_rich Low_complexity Low_complexity 1 25 0 368 232 196 0 chr9 23743117 23743255 -118528189 + MIR SINE MIR 84 248 -14 288 0 0 0 chr9 23744209 23744241 -118527203 + (TG)n Simple_repeat Simple_repeat 1 32 0 2035 111 14 10 chr9 23746176 23746488 -118524956 + AluSx SINE Alu 1 313 0 28 29 0 0 chr9 23746888 23746923 -118524521 + AT_rich Low_complexity Low_complexity 1 35 0 360 306 148 14 chr9 23750461 23750670 -118520774 - MIR SINE MIR -25 237 1 1881 157 106 52 chr9 23752035 23752404 -118519040 - MLT1B LTR MaLR -1 389 1 1448 219 38 98 chr9 23752456 23752550 -118518894 - L1MC5 LINE L1 -372 7589 7491 1462 197 3 20 chr9 23752550 23752849 -118518595 - AluJo SINE Alu -17 295 2 1448 219 38 98 chr9 23752849 23753254 -118518190 - L1MC5 LINE L1 -470 7491 7133 1738 143 24 31 chr9 23753254 23753563 -118517881 - AluJo SINE Alu 0 307 1 1448 219 38 98 chr9 23753563 23753700 -118517744 - L1MC5 LINE L1 -828 7133 6989 6170 27 1 1 chr9 23753712 23754387 -118517057 - L1PA3 LINE L1 -5 6150 5476 1202 219 40 18 chr9 23754390 23754719 -118516725 - L1M4 LINE L1 -1314 4832 4497 1056 41 0 0 chr9 23754736 23754858 -118516586 - L1PA3 LINE L1 0 6155 6034 3265 18 0 0 chr9 23754858 23755333 -118516111 - L1P2 LINE L1 -666 5489 5015 * 5040 29 7 0 chr9 23755324 23755912 -118515532 + L1P2 LINE L1 4415 5006 -1140 811 205 19 106 chr9 23755916 23756232 -118515212 - L1MC5 LINE L1 -966 6995 6707 1451 103 0 5 chr9 23756243 23756437 -118515007 + AluSg SINE Alu 1 193 -117 1723 81 0 0 chr9 23757151 23757362 -118514082 + AluSq SINE Alu 12 222 -91 2039 98 20 3 chr9 23757474 23757769 -118513675 + AluSx SINE Alu 1 300 -12 847 315 125 35 chr9 23758017 23758772 -118512672 - L2 LINE L2 -193 3079 2260 6301 86 6 15 chr9 23758977 23760358 -118511086 - L1PA13 LINE L1 -19 6144 4652 240 86 0 0 chr9 23760358 23760393 -118511051 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6301 86 6 15 chr9 23760393 23760943 -118510501 - L1PA13 LINE L1 -1511 4652 4099 11825 206 49 37 chr9 23760963 23762550 -118508894 - L1PA12 LINE L1 -3205 4379 2812 1815 147 10 31 chr9 23762550 23762842 -118508602 + AluSx SINE Alu 1 286 -26 11825 206 49 37 chr9 23762842 23766254 -118505190 - L1PA12 LINE L1 -4772 2812 5 22 0 0 0 chr9 23766276 23766298 -118505146 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr9 23766323 23766366 -118505078 + AT_rich Low_complexity Low_complexity 1 43 0 449 302 24 0 chr9 23766745 23766871 -118504573 - L2 LINE L2 -7 3306 3178 27 73 0 0 chr9 23767280 23767335 -118504109 + AT_rich Low_complexity Low_complexity 1 55 0 254 203 238 23 chr9 23768081 23768262 -118503182 + L1MC4 LINE L1 6964 7184 -777 352 286 193 11 chr9 23769690 23769912 -118501532 + MIR SINE MIR 10 262 0 309 216 0 29 chr9 23770166 23770268 -118501176 + MER113 DNA MER1_type? 18 116 -405 283 182 45 15 chr9 23770383 23770449 -118500995 + MER113 DNA MER1_type? 453 520 -1 192 267 12 81 chr9 23770450 23770536 -118500908 - MIR SINE MIR -59 203 124 1200 236 130 25 chr9 23770805 23771204 -118500240 + MLT1E LTR MaLR 34 474 -119 213 324 0 15 chr9 23771397 23771465 -118499979 + CT-rich Low_complexity Low_complexity 2 68 0 1891 134 20 13 chr9 23772027 23772333 -118499111 + MER1B DNA MER1_type 32 339 0 419 315 97 28 chr9 23772896 23773112 -118498332 - MIR SINE MIR -12 250 20 821 243 23 18 chr9 23773767 23773985 -118497459 - MER58A DNA MER1_type -1 223 5 538 319 81 0 chr9 23774000 23774210 -118497234 + MIR SINE MIR 35 261 -1 249 324 90 95 chr9 23776050 23776272 -118495172 + L2 LINE L2 3048 3268 -4 214 195 0 0 chr9 23777422 23777463 -118493981 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1759 202 116 7 chr9 23778869 23779290 -118492154 + MLT1C LTR MaLR 1 467 0 433 341 22 22 chr9 23779326 23779508 -118491936 - MIR SINE MIR -60 202 21 251 311 61 23 chr9 23779894 23780026 -118491418 - MIR SINE MIR -60 202 66 308 231 198 0 chr9 23781346 23781437 -118490007 - L2 LINE L2 0 3313 3205 227 150 25 0 chr9 23782235 23782275 -118489169 - L2 LINE L2 -2 3311 3271 308 223 95 40 chr9 23782718 23782866 -118488578 + MER113 DNA MER1_type? 1 156 -365 28 71 0 0 chr9 23782880 23782936 -118488508 + AT_rich Low_complexity Low_complexity 1 56 0 297 0 0 0 chr9 23784134 23784167 -118487277 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 345 122 17 chr9 23784319 23784538 -118486906 - MIR SINE MIR -3 259 11 189 280 20 0 chr9 23785285 23785335 -118486109 - L2 LINE L2 -8 3264 3214 * 371 390 16 16 chr9 23785310 23785500 -118485944 - MIR SINE MIR -28 234 45 292 315 98 33 chr9 23786006 23786190 -118485254 + MIR SINE MIR 11 206 -56 204 191 0 43 chr9 23786252 23786299 -118485145 + CT-rich Low_complexity Low_complexity 4 48 0 1800 171 0 25 chr9 23786875 23787190 -118484254 - AluJb SINE Alu -5 307 1 431 296 70 25 chr9 23787886 23788085 -118483359 + MIR SINE MIR 45 252 -10 276 335 177 5 chr9 23788765 23788974 -118482470 + MIR SINE MIR 18 262 0 228 317 32 54 chr9 23789265 23789451 -118481993 - MIR SINE MIR -31 231 50 274 305 63 32 chr9 23791325 23791420 -118480024 + L2 LINE L2 3175 3272 0 400 239 34 0 chr9 23793076 23793164 -118478280 + MIR SINE MIR 76 166 -96 * 1067 228 28 39 chr9 23793151 23793405 -118478039 - MIR SINE MIR 0 262 12 285 379 122 2 chr9 23793544 23793765 -118477679 - MIR SINE MIR -2 260 16 255 107 48 48 chr9 23793767 23793870 -118477574 + T-rich Low_complexity Low_complexity 3 105 0 1865 98 106 4 chr9 23793883 23794148 -118477296 - AluSx SINE Alu -20 292 1 22 56 0 0 chr9 23794154 23794190 -118477254 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr9 23794206 23794235 -118477209 + AT_rich Low_complexity Low_complexity 1 29 0 846 157 24 0 chr9 23794239 23794405 -118477039 - L1MA7 LINE L1 -9 6282 6113 194 222 0 0 chr9 23794888 23794924 -118476520 - L2 LINE L2 -15 3298 3263 1703 95 52 128 chr9 23795135 23795462 -118475982 - AluSg SINE Alu -7 303 2 979 285 107 38 chr9 23795620 23796153 -118475291 + L2 LINE L2 1961 2530 -784 39 22 0 0 chr9 23796220 23796266 -118475178 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 23796488 23796520 -118474924 + AT_rich Low_complexity Low_complexity 1 32 0 1950 133 10 3 chr9 23796622 23796915 -118474529 + AluJb SINE Alu 1 295 -17 1474 122 0 5 chr9 23796929 23797134 -118474310 + AluSq SINE Alu 1 204 -109 1256 121 0 0 chr9 23797135 23797308 -118474136 + AluSq SINE Alu 129 301 -12 590 263 34 6 chr9 23797655 23797830 -118473614 - MLT1I LTR MaLR 0 409 230 2339 97 26 3 chr9 23797838 23798180 -118473264 - THE1A LTR MaLR 0 355 6 11622 100 9 0 chr9 23798185 23799751 -118471693 - THE1A-int LTR MaLR 0 1580 1 2579 92 3 14 chr9 23799751 23800110 -118471334 - THE1A LTR MaLR 0 355 1 246 265 15 0 chr9 23800173 23800241 -118471203 - MLT1J1 LTR MaLR -284 162 94 21 0 0 0 chr9 23800755 23800776 -118470668 + AT_rich Low_complexity Low_complexity 1 21 0 378 315 43 19 chr9 23800778 23800940 -118470504 + MIR SINE MIR 41 206 -56 311 270 87 56 chr9 23801776 23801902 -118469542 + MIR SINE MIR 24 153 -109 225 0 0 0 chr9 23802092 23802117 -118469327 + (GA)n Simple_repeat Simple_repeat 2 26 0 209 363 131 29 chr9 23802437 23802751 -118468693 - L2 LINE L2 -1905 1409 1064 1539 174 82 14 chr9 23805306 23805588 -118465856 - AluJo SINE Alu -11 301 1 226 86 0 0 chr9 23805719 23805754 -118465690 - L1P1 LINE L1 -427 5728 5694 3640 43 2 0 chr9 23805877 23806320 -118465124 + L1PA5 LINE L1 5711 6154 0 357 82 0 0 chr9 23806619 23806668 -118464776 + (CA)n Simple_repeat Simple_repeat 2 50 0 272 254 0 0 chr9 23806749 23806808 -118464636 + L2 LINE L2 3209 3267 -5 387 324 75 72 chr9 23807323 23807684 -118463760 - L2 LINE L2 -69 3203 2842 638 91 41 41 chr9 23808602 23808615 -118462829 - AluSg/x SINE Alu 0 310 298 1638 172 9 23 chr9 23808615 23808958 -118462486 - L1MA6 LINE L1 -1 6299 5962 638 91 41 41 chr9 23808958 23809065 -118462379 - AluSg/x SINE Alu -11 299 190 421 314 62 119 chr9 23809349 23809719 -118461725 - L2 LINE L2 0 3272 2924 331 325 96 10 chr9 23810003 23810212 -118461232 + MLT1K LTR MaLR 315 541 -47 387 291 104 15 chr9 23810231 23810365 -118461079 - MIR3 SINE MIR -38 170 25 619 86 0 0 chr9 23810381 23810474 -118460970 - AluY SINE Alu 0 311 219 204 278 252 46 chr9 23810604 23810755 -118460689 + MIR3 SINE MIR 21 202 -6 207 225 0 0 chr9 23810865 23810905 -118460539 - L2 LINE L2 -13 3300 3261 286 284 97 30 chr9 23811550 23811684 -118459760 + MIR SINE MIR 33 175 -87 257 305 48 9 chr9 23811904 23812009 -118459435 + MIR SINE MIR 59 167 -95 1848 157 17 14 chr9 23812961 23813255 -118458189 - AluJb SINE Alu -16 296 2 232 250 0 29 chr9 23814007 23814075 -118457369 - MER113 DNA MER1_type? -3 518 453 533 239 91 10 chr9 23814078 23814287 -118457157 - MER113 DNA MER1_type? -295 226 1 233 368 62 28 chr9 23814476 23814620 -118456824 - L2 LINE L2 -160 3112 2964 2270 102 10 3 chr9 23815143 23815447 -118455997 - AluSq SINE Alu -7 306 1 270 53 13 133 chr9 23815537 23815612 -118455832 - Charlie5 DNA MER1_type -77 2535 2470 1032 228 3 81 chr9 23815635 23815776 -118455668 - L1MA9 LINE L1 -89 6223 6072 2053 122 30 13 chr9 23815776 23816079 -118455365 - AluJb SINE Alu -4 308 1 1032 228 3 81 chr9 23816079 23816318 -118455126 - L1MA9 LINE L1 -240 6072 5873 888 206 109 0 chr9 23816321 23816588 -118454856 - Charlie5 DNA MER1_type -83 2529 2234 295 278 0 0 chr9 23816617 23816707 -118454737 - Charlie5 DNA MER1_type -2514 98 9 528 296 100 98 chr9 23817053 23817432 -118454012 - L3 LINE CR1 -288 1289 910 386 235 174 45 chr9 23817649 23817781 -118453663 - MER5A DNA MER1_type -1 188 40 2106 107 0 71 chr9 23818296 23818632 -118452812 + AluSx SINE Alu 1 312 0 21 36 0 0 chr9 23820370 23820398 -118451046 + AT_rich Low_complexity Low_complexity 1 28 0 223 250 0 47 chr9 23820791 23820855 -118450589 + MIR SINE MIR 75 135 -127 403 313 39 0 chr9 23821462 23821590 -118449854 - MIR SINE MIR -82 180 48 519 282 144 0 chr9 23822162 23822350 -118449094 - MIR SINE MIR 0 262 48 285 326 49 71 chr9 23822559 23822743 -118448701 - MER5A DNA MER1_type 0 189 10 221 272 281 0 chr9 23822762 23822986 -118448458 - L2 LINE L2 -816 2498 2212 429 323 72 20 chr9 23823151 23823346 -118448098 - MIR SINE MIR -37 225 21 2469 46 0 7 chr9 23824532 23824835 -118446609 + AluY SINE Alu 1 301 -10 281 357 41 6 chr9 23825117 23825288 -118446156 + MIR SINE MIR 36 212 -50 207 100 0 0 chr9 23825833 23825863 -118445581 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 885 276 138 27 chr9 23826050 23826600 -118444844 + MLT1L LTR MaLR 1 611 -4 1262 247 68 9 chr9 23826758 23827212 -118444232 + MER113 DNA MER1_type? 4 484 -37 240 167 0 0 chr9 23827514 23827562 -118443882 + (CA)n Simple_repeat Simple_repeat 1 48 0 1630 160 7 65 chr9 23828534 23828840 -118442604 - AluJb SINE Alu -20 292 5 36118 41 5 0 chr9 23828925 23834401 -118437043 - L1PA4 LINE L1 -2 6153 656 5146 43 9 1 chr9 23834399 23835093 -118436351 - L1P LINE L1 -3208 2938 2240 * 239 290 20 40 chr9 23835127 23835227 -118436217 - L2 LINE L2 -241 3031 2934 269 371 10 10 chr9 23835334 23835431 -118436013 - L2 LINE L2 0 3272 3176 406 257 30 10 chr9 23835438 23835539 -118435905 - L2 LINE L2 -31 3282 3180 396 343 34 56 chr9 23835587 23835911 -118435533 + L2 LINE L2 2661 2977 -337 335 236 0 9 chr9 23837254 23837364 -118434080 + (TATG)n Simple_repeat Simple_repeat 2 110 0 28 0 0 0 chr9 23837566 23837594 -118433850 + AT_rich Low_complexity Low_complexity 1 28 0 323 324 174 10 chr9 23837710 23837917 -118433527 - MIR SINE MIR -20 242 2 553 328 117 49 chr9 23837970 23838562 -118432882 - L2 LINE L2 -3 3269 2619 566 201 33 76 chr9 23838562 23838746 -118432698 + MER104 DNA MER2_type 2 177 -3 553 328 117 49 chr9 23838746 23838784 -118432660 - L2 LINE L2 -653 2619 2585 3213 216 38 20 chr9 23839242 23840131 -118431313 - L1MB8 LINE L1 -6 6172 5268 333 0 0 0 chr9 23840760 23840797 -118430647 + (CA)n Simple_repeat Simple_repeat 2 38 0 589 174 87 127 chr9 23841446 23841722 -118429722 - MLT1C LTR MaLR 0 467 203 185 233 23 0 chr9 23842009 23842052 -118429392 - MIR3 SINE MIR -3 205 162 434 18 18 0 chr9 23842226 23842281 -118429163 + (TG)n Simple_repeat Simple_repeat 1 56 0 21 57 0 0 chr9 23842716 23842751 -118428693 + AT_rich Low_complexity Low_complexity 1 35 0 279 79 0 0 chr9 23843735 23843773 -118427671 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 253 305 161 45 chr9 23843942 23844165 -118427279 - MIR SINE MIR 0 262 14 688 236 7 0 chr9 23844378 23844526 -118426918 - MLT1G1 LTR MaLR 0 595 447 449 264 104 35 chr9 23844607 23844877 -118426567 - MLT1G1 LTR MaLR -327 263 14 534 244 59 92 chr9 23844891 23845003 -118426441 + MIR SINE MIR 1 115 -147 1984 108 0 59 chr9 23845003 23845172 -118426272 - AluSx SINE Alu -24 288 143 2219 122 0 0 chr9 23845172 23845475 -118425969 - AluSg SINE Alu -7 303 1 1984 108 0 59 chr9 23845475 23845611 -118425833 - AluSx SINE Alu -169 143 1 534 244 59 92 chr9 23845611 23845769 -118425675 + MIR SINE MIR 115 262 0 602 274 105 9 chr9 23845870 23846089 -118425355 - MIR SINE MIR 0 262 23 257 332 174 32 chr9 23846118 23846371 -118425073 - L2 LINE L2 -556 2758 2470 277 56 0 0 chr9 23847500 23847536 -118423908 - 5S rRNA rRNA -85 36 1 200 35 35 0 chr9 23848020 23848049 -118423395 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 388 333 46 7 chr9 23849053 23849206 -118422238 + MIR3 SINE MIR 47 205 -3 235 268 124 0 chr9 23849623 23849720 -118421724 - MIR SINE MIR -8 254 146 649 253 49 58 chr9 23849976 23850284 -118421160 - L1ME3A LINE L1 -213 5957 5653 357 333 29 29 chr9 23850291 23850429 -118421015 - MIR SINE MIR -120 142 5 241 311 11 0 chr9 23851169 23851259 -118420185 - MLT1K LTR MaLR 0 588 498 964 208 25 38 chr9 23852120 23852360 -118419084 - MLT1E1 LTR MaLR -1 653 417 593 211 180 77 chr9 23852369 23852630 -118418814 - MLT1E1 LTR MaLR -327 299 12 1334 281 41 10 chr9 23853442 23853859 -118417585 - LTR16B LTR ERVL 0 464 35 274 268 14 0 chr9 23854430 23854501 -118416943 + MER94 DNA DNA 61 132 -2 764 279 156 46 chr9 23855394 23855935 -118415509 - L2 LINE L2 -1 3312 2713 188 279 144 19 chr9 23857059 23857163 -118414281 - MIR SINE MIR -71 137 21 276 91 0 0 chr9 23857355 23857399 -118414045 + (GA)n Simple_repeat Simple_repeat 1 44 0 602 288 52 48 chr9 23858087 23858316 -118413128 + MIR SINE MIR 18 247 -15 343 247 130 7 chr9 23859046 23859200 -118412244 + MIR SINE MIR 22 194 -68 433 254 26 36 chr9 23859574 23859696 -118411748 - MIR SINE MIR -63 145 38 314 127 0 16 chr9 23859844 23859907 -118411537 + (CAT)n Simple_repeat Simple_repeat 3 64 0 321 89 0 0 chr9 23860017 23860062 -118411382 + (CAT)n Simple_repeat Simple_repeat 1 45 0 840 220 136 28 chr9 23860073 23860287 -118411157 - MIR SINE MIR -21 241 5 7291 136 35 8 chr9 23860586 23862681 -118408763 - L1MA5A LINE L1 0 6300 4056 699 277 26 60 chr9 23862825 23863175 -118408269 + L3 LINE CR1 1143 1480 -97 355 287 28 0 chr9 23864068 23864176 -118407268 + MARNA DNA Mariner 11 121 -465 519 287 83 26 chr9 23864310 23864575 -118406869 + MARNA DNA Mariner 218 497 -89 697 308 72 20 chr9 23864778 23865178 -118406266 + L1MC4a LINE L1 5488 5908 -1900 934 162 27 0 chr9 23865223 23865371 -118406073 - Tigger2a DNA MER2_type 0 444 293 567 168 0 10 chr9 23865372 23865473 -118405971 - Tigger2a DNA MER2_type -327 107 8 23 0 0 0 chr9 23865582 23865605 -118405839 + AT_rich Low_complexity Low_complexity 1 23 0 2326 49 18 0 chr9 23865805 23866090 -118405354 - AluY SINE Alu -6 305 16 2181 123 0 0 chr9 23866304 23866613 -118404831 - AluSg SINE Alu -1 309 1 310 304 108 52 chr9 23867119 23867313 -118404131 + MIR SINE MIR 8 212 -50 286 317 83 7 chr9 23867471 23867616 -118403828 - MIR SINE MIR -7 255 100 358 277 151 15 chr9 23870111 23870322 -118401122 - MIR SINE MIR -15 247 12 2526 61 0 0 chr9 23870718 23871029 -118400415 - AluY SINE Alu 0 311 1 191 296 0 70 chr9 23871433 23871504 -118399940 - MIR SINE MIR -188 74 9 1019 166 12 0 chr9 23871531 23871694 -118399750 + FRAM SINE Alu 2 166 0 2176 77 33 0 chr9 23871921 23872216 -118399228 - AluSg SINE Alu 0 304 1 287 248 20 10 chr9 23872230 23872331 -118399113 - L1MC5 LINE L1 -30 7931 7830 1968 135 35 0 chr9 23873452 23873740 -118397704 + AluSq SINE Alu 1 298 -15 789 254 49 18 chr9 23874148 23874372 -118397072 - MIR SINE MIR 0 262 32 207 0 0 0 chr9 23874406 23874429 -118397015 + (GA)n Simple_repeat Simple_repeat 2 24 0 654 317 128 20 chr9 23877153 23877613 -118393831 - L2 LINE L2 0 3313 2804 1033 143 21 66 chr9 23878228 23878455 -118392989 + MLT1C LTR MaLR 6 223 -167 512 175 0 21 chr9 23878456 23878544 -118392900 + AluJ/FRAM SINE Alu 218 305 -7 1693 195 16 0 chr9 23878544 23878851 -118392593 + AluJo SINE Alu 1 312 0 1133 219 46 18 chr9 23878863 23879146 -118392298 + MLT1C LTR MaLR 169 459 -8 198 0 0 0 chr9 23879273 23879295 -118392149 + (T)n Simple_repeat Simple_repeat 1 22 0 1171 136 0 30 chr9 23879594 23879792 -118391652 - AluJo SINE Alu 0 312 121 538 276 70 89 chr9 23880153 23880511 -118390933 + MLT1H LTR MaLR 59 409 0 216 0 0 0 chr9 23881224 23881248 -118390196 + (T)n Simple_repeat Simple_repeat 1 24 0 695 284 96 0 chr9 23882060 23882257 -118389187 + MER58A DNA MER1_type 1 216 -8 261 221 13 13 chr9 23882385 23882462 -118388982 + (TA)n Simple_repeat Simple_repeat 2 78 0 383 316 31 48 chr9 23882463 23882691 -118388753 - L1ME LINE L1 -641 5480 5257 26 0 0 0 chr9 23882849 23882875 -118388569 + AT_rich Low_complexity Low_complexity 1 26 0 1535 191 9 86 chr9 23882911 23883340 -118388104 - L1MC3 LINE L1 0 7785 7390 * 3642 169 54 73 chr9 23883337 23884248 -118387196 - L1MC3 LINE L1 -621 7164 6272 285 333 14 57 chr9 23885344 23885485 -118385959 - MIR SINE MIR -80 182 48 207 336 59 34 chr9 23885481 23885600 -118385844 + L2 LINE L2 3191 3312 -1 * 278 295 87 58 chr9 23886442 23886615 -118384829 + L2 LINE L2 2625 2802 -512 290 324 6 41 chr9 23887317 23887487 -118383957 + HERVL LTR ERVL 5194 5357 -297 322 306 75 56 chr9 23887764 23888032 -118383412 + LTR16C LTR ERVL 125 397 -94 270 264 91 9 chr9 23888171 23888281 -118383163 + HAL1 LINE L1 1241 1359 -1148 786 244 188 36 chr9 23888336 23888729 -118382715 - HAL1 LINE L1 -651 1856 1404 263 208 19 0 chr9 23888758 23888811 -118382633 - HAL1 LINE L1 -1612 895 842 1488 271 89 29 chr9 23888826 23889095 -118382349 - L1ME LINE L1 -4426 1654 1403 180 0 0 0 chr9 23889095 23889115 -118382329 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1488 271 89 29 chr9 23889115 23889850 -118381594 - L1ME LINE L1 -4677 1403 713 2297 70 7 30 chr9 23889850 23890150 -118381294 + AluY SINE Alu 1 293 -18 1488 271 89 29 chr9 23890150 23890251 -118381193 - L1ME LINE L1 -5367 713 619 2298 85 3 25 chr9 23890251 23890568 -118380876 - AluSp SINE Alu -3 310 1 1488 271 89 29 chr9 23890568 23891000 -118380444 - L1ME LINE L1 -5461 619 42 276 372 15 15 chr9 23891235 23891372 -118380072 + L2 LINE L2 2933 3069 -203 1406 157 0 63 chr9 23891430 23891618 -118379826 + MLT1A1 LTR MaLR 127 296 -69 2382 78 3 0 chr9 23891618 23891914 -118379530 + AluY SINE Alu 1 297 -14 1406 157 0 63 chr9 23891914 23891980 -118379464 + MLT1A1 LTR MaLR 296 365 0 716 325 48 63 chr9 23892017 23892540 -118378904 + L2 LINE L2 2571 3081 -232 230 261 15 15 chr9 23892655 23892720 -118378724 + LTR33 LTR ERVL 75 139 -382 504 233 120 83 chr9 23892750 23893016 -118378428 + LTR33 LTR ERVL 238 513 -8 352 274 12 0 chr9 23893017 23893101 -118378343 + L2 LINE L2 3229 3313 0 363 297 102 0 chr9 23894659 23894787 -118376657 + L1MEd LINE L1 499 639 -5480 432 195 19 110 chr9 23894813 23894967 -118376477 - MER20 DNA MER1_type -75 144 5 549 75 252 28 chr9 23895041 23895175 -118376269 + FLAM_C SINE Alu 1 158 0 276 185 121 38 chr9 23895198 23895355 -118376089 + L1MEd LINE L1 700 869 -5250 897 262 148 15 chr9 23896458 23896790 -118374654 + L3b LINE CR1 1116 1491 -92 273 275 175 37 chr9 23897778 23897967 -118373477 - MIR SINE MIR -47 215 1 2400 85 3 0 chr9 23899974 23900281 -118371163 + AluY SINE Alu 1 308 -3 748 218 111 27 chr9 23900559 23900784 -118370660 + MIR SINE MIR 1 244 -18 732 229 66 60 chr9 23900806 23901107 -118370337 - L1ME1 LINE L1 -18 6148 5846 22 0 0 0 chr9 23901170 23901192 -118370252 + AT_rich Low_complexity Low_complexity 1 22 0 2451 99 47 63 chr9 23902075 23902297 -118369147 - L1PB2 LINE L1 -7 6144 5931 2436 58 3 0 chr9 23902297 23902592 -118368852 + AluY SINE Alu 1 296 -15 2451 99 47 63 chr9 23902592 23902812 -118368632 - L1PB2 LINE L1 -220 5931 5709 21 0 0 0 chr9 23902852 23902873 -118368571 + AT_rich Low_complexity Low_complexity 1 21 0 376 271 31 97 chr9 23902898 23903058 -118368386 - MIR SINE MIR -65 143 2 246 332 150 16 chr9 23903265 23903452 -118367992 + MIR SINE MIR 34 245 -17 409 355 30 6 chr9 23905151 23905317 -118366127 - MIR SINE MIR -72 190 21 257 253 71 39 chr9 23905885 23906067 -118365377 + L1ME4a LINE L1 5185 5372 -774 306 271 41 25 chr9 23906152 23906274 -118365170 + L1ME4a LINE L1 5480 5603 -518 1825 163 0 10 chr9 23906276 23906582 -118364862 + AluJb SINE Alu 1 303 -9 30 59 0 0 chr9 23906715 23906766 -118364678 + AT_rich Low_complexity Low_complexity 1 51 0 947 266 101 44 chr9 23906795 23907381 -118364063 - L1MC5 LINE L1 -64 7897 7279 570 265 33 20 chr9 23907499 23907767 -118363677 - L1MC4 LINE L1 -734 7227 6983 350 202 139 72 chr9 23907776 23907984 -118363460 + L1ME4a LINE L1 5713 5934 -187 23 0 0 0 chr9 23908205 23908228 -118363216 + AT_rich Low_complexity Low_complexity 1 23 0 375 41 0 0 chr9 23908440 23908489 -118362955 + (TG)n Simple_repeat Simple_repeat 2 50 0 216 343 112 15 chr9 23908712 23908846 -118362598 + MIR SINE MIR 110 256 -6 637 260 85 22 chr9 23908897 23909120 -118362324 + MIR SINE MIR 5 241 -21 1749 166 28 0 chr9 23910685 23911010 -118360434 - MLT2C2 LTR ERVL -126 338 5 1711 190 3 13 chr9 23911718 23912018 -118359426 - AluJo SINE Alu -15 297 1 255 226 160 38 chr9 23912868 23912919 -118358525 - L2 LINE L2 -16 3256 3213 2334 97 3 3 chr9 23912919 23913228 -118358216 + AluSx SINE Alu 1 309 -3 255 226 160 38 chr9 23913228 23913282 -118358162 - L2 LINE L2 -59 3213 3138 428 318 62 11 chr9 23914057 23914233 -118357211 - MIR SINE MIR -58 204 20 325 287 72 50 chr9 23914212 23914393 -118357051 + MIR SINE MIR 29 213 -49 * 27 62 0 0 chr9 23914785 23914833 -118356611 + AT_rich Low_complexity Low_complexity 1 48 0 358 196 21 10 chr9 23914843 23914940 -118356504 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 382 259 107 0 chr9 23914974 23915086 -118356358 + MIR SINE MIR 139 262 0 39258 58 6 1 chr9 23916360 23922404 -118349040 + L1PA5 LINE L1 76 6149 -5 26 50 0 0 chr9 23922729 23922769 -118348675 + AT_rich Low_complexity Low_complexity 1 40 0 27 92 0 0 chr9 23922870 23922946 -118348498 + AT_rich Low_complexity Low_complexity 1 76 0 336 267 86 43 chr9 23923015 23923202 -118348242 - L1MC4 LINE L1 -142 7900 7706 274 258 82 0 chr9 23923496 23923593 -118347851 - L1ME4a LINE L1 -83 6038 5934 6696 240 23 29 chr9 23923625 23925210 -118346234 + L1PA11 LINE L1 2 1595 -5989 267 93 0 0 chr9 23925210 23925253 -118346191 + (CCA)n Simple_repeat Simple_repeat 1 43 0 6696 240 23 29 chr9 23925253 23926476 -118344968 + L1PA11 LINE L1 1595 3599 -3985 15556 173 31 19 chr9 23926477 23928906 -118342538 + L1PA11 LINE L1 3700 6187 -1425 354 23 0 0 chr9 23928906 23928949 -118342495 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 15556 173 31 19 chr9 23928949 23930393 -118341051 + L1PA11 LINE L1 6187 7612 0 2725 104 17 0 chr9 23930395 23930816 -118340628 - L1PA10 LINE L1 -86 6082 5655 348 329 53 0 chr9 23930888 23931040 -118340404 - L1ME4a LINE L1 -413 5708 5549 2160 137 0 0 chr9 23931224 23931517 -118339927 + AluSx SINE Alu 3 295 -17 2467 66 0 10 chr9 23931764 23932067 -118339377 + AluY SINE Alu 1 300 -11 12377 198 24 15 chr9 23932504 23936144 -118335300 - L1PA13 LINE L1 -3 6811 3156 560 93 35 0 chr9 23936150 23936236 -118335208 - L1PA13 LINE L1 -4509 2278 2190 2028 150 37 8 chr9 23936247 23936601 -118334843 + THE1B LTR MaLR 1 364 0 9964 114 21 53 chr9 23936601 23938234 -118333210 + THE1B-int LTR MaLR 1 1580 0 2077 155 29 0 chr9 23938234 23938583 -118332861 + THE1B LTR MaLR 1 359 -5 7114 216 87 6 chr9 23938588 23940234 -118331210 - L1PA13 LINE L1 -4604 2183 405 601 278 17 0 chr9 23941537 23941717 -118329727 - L1MC4 LINE L1 -1220 6822 6640 582 255 129 43 chr9 23941712 23942533 -118328911 - L1MC4 LINE L1 -1193 6615 5800 * 279 93 0 0 chr9 23942564 23942607 -118328837 + (GA)n Simple_repeat Simple_repeat 2 44 0 250 181 42 14 chr9 23943927 23943999 -118327445 - L1MA7 LINE L1 0 6291 6218 896 246 96 20 chr9 23944026 23944466 -118326978 - Charlie4a DNA MER1_type -35 473 1 30 77 0 0 chr9 23944663 23944728 -118326716 + AT_rich Low_complexity Low_complexity 1 65 0 528 322 7 46 chr9 23944854 23945137 -118326307 - L1MEd LINE L1 -5446 673 402 378 318 31 49 chr9 23945210 23945433 -118326011 - L1MEd LINE L1 -5888 231 13 359 306 33 66 chr9 23945461 23945644 -118325800 - MIR SINE MIR -66 196 20 292 363 8 8 chr9 23945706 23945830 -118325614 + L2 LINE L2 3190 3313 0 216 341 0 49 chr9 23948974 23949056 -118322388 - L2 LINE L2 0 3313 3236 2445 74 3 0 chr9 23949065 23949363 -118322081 + AluY SINE Alu 1 299 -12 883 288 0 5 chr9 23950179 23950384 -118321060 - MIR SINE MIR -57 205 2 494 233 182 17 chr9 23950516 23950692 -118320752 - MIR SINE MIR -57 205 1 26 0 0 0 chr9 23950896 23950922 -118320522 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr9 23952044 23952067 -118319377 + AT_rich Low_complexity Low_complexity 1 23 0 588 223 14 7 chr9 23952072 23952220 -118319224 - MER113 DNA MER1_type? -27 494 346 24 85 0 0 chr9 23952339 23952398 -118319046 + AT_rich Low_complexity Low_complexity 1 59 0 512 228 256 5 chr9 23952548 23952763 -118318681 + MER5C DNA MER1_type 1 269 -55 306 369 8 0 chr9 23952920 23953042 -118318402 + L2 LINE L2 3190 3312 -1 303 305 17 8 chr9 23953312 23953430 -118318014 - MLT1I LTR MaLR -10 399 281 509 282 15 68 chr9 23953477 23953683 -118317761 - MLT1I LTR MaLR -214 195 1 282 29 0 0 chr9 23954230 23954265 -118317179 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 773 321 73 45 chr9 23955365 23955723 -118315721 + L2 LINE L2 2902 3269 -44 6747 210 13 10 chr9 23955763 23957184 -118314260 + L1M1 LINE L1 9 1434 -6131 4592 110 47 22 chr9 23957187 23957957 -118313487 + L1MA2 LINE L1 5516 6304 0 211 209 0 0 chr9 23957966 23958009 -118313435 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 23 68 0 0 chr9 23959551 23959595 -118311849 + AT_rich Low_complexity Low_complexity 1 44 0 43457 45 2 1 chr9 23959595 23965742 -118305702 - L1PA4 LINE L1 -3 6152 1 29 47 0 0 chr9 23965802 23965845 -118305599 + AT_rich Low_complexity Low_complexity 1 43 0 189 403 0 14 chr9 23965885 23965957 -118305487 - L2 LINE L2 -53 3219 3149 412 308 51 40 chr9 23965963 23966469 -118304975 - L1MEd LINE L1 -3219 2910 2399 851 227 26 16 chr9 23966470 23966664 -118304780 + MLT1F1 LTR MaLR 372 567 0 287 270 67 34 chr9 23966677 23966855 -118304589 - L1MEd LINE L1 -4969 1150 967 322 311 58 48 chr9 23967011 23967217 -118304227 - L1MEd LINE L1 -5492 627 420 327 94 62 0 chr9 23967394 23967490 -118303954 + (TA)n Simple_repeat Simple_repeat 2 103 0 25 0 0 0 chr9 23967494 23967519 -118303925 + AT_rich Low_complexity Low_complexity 1 25 0 418 226 118 0 chr9 23968184 23968286 -118303158 + L1PA11 LINE L1 1 114 -7467 * 1838 259 121 50 chr9 23968283 23968702 -118302742 + L1PA11 LINE L1 318 705 -6876 222 91 0 0 chr9 23968702 23968735 -118302709 + (TTG)n Simple_repeat Simple_repeat 3 35 0 1819 100 4 8 chr9 23968735 23968991 -118302453 - AluY SINE Alu -50 261 7 2152 101 3 13 chr9 23968991 23969163 -118302281 - AluSg SINE Alu -7 303 134 2256 102 7 0 chr9 23969163 23969456 -118301988 - AluSx SINE Alu -17 295 1 2152 101 3 13 chr9 23969456 23969589 -118301855 - AluSg SINE Alu -176 134 1 1838 259 121 50 chr9 23969589 23969938 -118301506 + L1PA11 LINE L1 704 1138 -6443 666 146 114 0 chr9 23969919 23970042 -118301402 + L1PA11 LINE L1 3199 3335 -4249 * 2094 85 5 170 chr9 23970042 23970454 -118300990 - LTR14B LTR ERVK 0 608 1 18681 153 11 26 chr9 23970458 23974266 -118297178 + L1PA11 LINE L1 3332 7081 -531 384 0 22 0 chr9 23974225 23974271 -118297173 - L1PA8A LINE L1 -469 5662 5616 * 3609 110 34 2 chr9 23974319 23974880 -118296564 + L1PA11 LINE L1 7048 7625 0 241 311 32 47 chr9 23974901 23975178 -118296266 + L1M4 LINE L1 4387 4659 -1487 322 252 178 9 chr9 23975386 23975493 -118295951 - L2 LINE L2 -1 3312 3188 389 245 66 0 chr9 23975710 23975816 -118295628 - MER5C DNA MER1_type -211 113 1 253 241 36 12 chr9 23977528 23977611 -118293833 + T-rich Low_complexity Low_complexity 4 88 0 288 0 0 0 chr9 23978383 23978415 -118293029 + (T)n Simple_repeat Simple_repeat 1 32 0 280 323 85 0 chr9 23978979 23979109 -118292335 + MIR SINE MIR 112 252 -10 202 326 61 45 chr9 23979401 23979533 -118291911 + L3 LINE CR1 1414 1547 -30 418 343 72 81 chr9 23979584 23980027 -118291417 + L2 LINE L2 2812 3250 -22 205 296 97 61 chr9 23981192 23981388 -118290056 + L2 LINE L2 3084 3286 -27 189 107 0 0 chr9 23982294 23982322 -118289122 + (TG)n Simple_repeat Simple_repeat 2 29 0 829 169 87 49 chr9 23982605 23982788 -118288656 + MIR SINE MIR 67 256 -6 189 214 0 0 chr9 23982792 23982834 -118288610 + CT-rich Low_complexity Low_complexity 3 44 0 655 219 20 7 chr9 23983368 23983514 -118287930 - MIR SINE MIR -16 246 99 261 263 79 0 chr9 23983777 23983853 -118287591 + L2 LINE L2 3186 3267 -5 180 0 0 0 chr9 23984219 23984239 -118287205 + (T)n Simple_repeat Simple_repeat 1 20 0 214 205 0 0 chr9 23984553 23984592 -118286852 + T-rich Low_complexity Low_complexity 1 39 0 392 237 122 0 chr9 23985546 23985685 -118285759 - MER103 DNA DNA -2 164 9 580 270 75 6 chr9 23986129 23986303 -118285141 + MIR SINE MIR 41 226 -36 259 392 64 0 chr9 23986562 23986687 -118284757 - L2 LINE L2 -14 3258 3126 8492 191 39 11 chr9 23986840 23989567 -118281877 - L1PA16 LINE L1 -8 6861 4212 2448 153 24 14 chr9 23989567 23989991 -118281453 - MSTA LTR MaLR 0 428 1 9217 173 20 2 chr9 23989991 23991613 -118279831 - MSTA-int LTR MaLR 0 1651 1 2541 163 9 0 chr9 23991613 23992037 -118279407 - MSTA LTR MaLR 0 428 1 8492 191 39 11 chr9 23992037 23992130 -118279314 - L1PA16 LINE L1 -2656 4213 3959 551 77 0 0 chr9 23992488 23992566 -118278878 + L1PA7 LINE L1 6074 6151 -3 1899 261 38 5 chr9 23993487 23994093 -118277351 - L1 LINE L1 -2889 3257 2632 * 13243 149 16 151 chr9 23994088 23997605 -118273839 - L1PA16 LINE L1 -3660 3189 143 795 185 49 0 chr9 23997866 23998050 -118273394 - L1MB3 LINE L1 -1 6182 5990 2029 255 60 0 chr9 23998051 23998514 -118272930 + L1PA13 LINE L1 436 926 -5861 890 171 67 0 chr9 23998514 23998678 -118272766 + MSTB LTR MaLR 250 424 -2 8812 182 22 4 chr9 23998679 24000299 -118271145 + MSTA-int LTR MaLR 2 1651 0 1993 166 79 22 chr9 24000299 24000702 -118270742 + MSTA LTR MaLR 1 426 -2 9802 230 57 37 chr9 24000709 24002997 -118268447 - L1 LINE L1 -1008 5840 3733 3166 192 35 1 chr9 24002997 24003684 -118267760 - L1MA4 LINE L1 -1 6299 5590 9802 230 57 37 chr9 24003684 24006029 -118265415 - L1 LINE L1 -3115 3733 1436 473 264 26 26 chr9 24006928 24007083 -118264361 - L2 LINE L2 0 3313 3159 541 302 63 36 chr9 24007622 24007844 -118263600 + LTR16C LTR ERVL 179 406 -85 430 247 21 59 chr9 24008187 24008373 -118263071 - L1MC5 LINE L1 -741 7220 7042 264 306 8 33 chr9 24008432 24008553 -118262891 + CT-rich Low_complexity Low_complexity 3 120 0 501 291 70 57 chr9 24008558 24008696 -118262748 - L1MC4 LINE L1 -891 6917 6782 1691 216 14 3 chr9 24008696 24009057 -118262387 + MLT1A1 LTR MaLR 1 365 0 501 291 70 57 chr9 24009057 24009316 -118262128 - L1MC4 LINE L1 -1026 6782 6554 21 57 0 0 chr9 24009326 24009361 -118262083 + AT_rich Low_complexity Low_complexity 1 35 0 326 320 141 51 chr9 24009380 24009792 -118261652 - L1MC4a LINE L1 -1386 6422 5974 440 14 58 0 chr9 24009827 24009896 -118261548 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 241 226 65 0 chr9 24009912 24009974 -118261470 - L1MC4a LINE L1 -1869 5939 5874 427 257 224 6 chr9 24009975 24010158 -118261286 - L1MC4a LINE L1 -1993 5815 5593 1859 194 12 9 chr9 24010165 24010511 -118260933 - MLT1A1 LTR MaLR 0 365 19 892 268 31 7 chr9 24010543 24010830 -118260614 - L1MC4a LINE L1 -2219 5589 5296 374 226 0 81 chr9 24010838 24010962 -118260482 - L1ME1 LINE L1 -5 6161 6048 595 302 99 62 chr9 24010972 24011029 -118260415 - L1MC4a LINE L1 -839 5307 5254 1938 142 139 21 chr9 24011029 24011410 -118260034 + MSTA LTR MaLR 1 426 -2 595 302 99 62 chr9 24011410 24011440 -118260004 - L1MC4a LINE L1 -892 5254 5227 1949 123 18 7 chr9 24011440 24011725 -118259719 - AluY SINE Alu 0 311 24 595 302 99 62 chr9 24011725 24012140 -118259304 - L1MC4a LINE L1 -919 5227 4785 22 35 0 0 chr9 24012146 24012175 -118259269 + AT_rich Low_complexity Low_complexity 1 29 0 458 274 123 25 chr9 24012711 24012796 -118258648 - MER2 DNA MER2_type -1 344 269 1802 194 11 5 chr9 24012796 24013167 -118258277 + L1PA16 LINE L1 5794 6166 0 458 274 123 25 chr9 24013167 24013285 -118258159 - MER2 DNA MER2_type -76 269 121 6701 200 81 40 chr9 24013289 24014832 -118256612 + L1M1 LINE L1 15 1621 -5944 1175 243 71 4 chr9 24014853 24015133 -118256311 - AluJb SINE Alu -3 299 1 586 298 108 48 chr9 24015228 24015897 -118255547 - L1MC4a LINE L1 -3316 2830 2122 473 318 35 20 chr9 24016355 24016553 -118254891 + MIR SINE MIR 13 213 -49 342 321 111 12 chr9 24016710 24016979 -118254465 - L2 LINE L2 -328 2985 2687 346 350 65 32 chr9 24017009 24017286 -118254158 - L2 LINE L2 -795 2519 2234 24 0 0 0 chr9 24118234 24118258 -118153186 + AT_rich Low_complexity Low_complexity 1 24 0 242 302 79 36 chr9 24118720 24118859 -118152585 - MIR SINE MIR -10 252 108 378 307 150 29 chr9 24119553 24119700 -118151744 + L1M4 LINE L1 4698 4826 -1320 438 20 0 0 chr9 24119700 24119751 -118151693 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 307 150 29 chr9 24119751 24120082 -118151362 + L1M4 LINE L1 4826 5234 -912 24 53 0 0 chr9 24120168 24120206 -118151238 + AT_rich Low_complexity Low_complexity 1 38 0 2005 94 71 10 chr9 24120365 24120673 -118150771 - L1PA4 LINE L1 -3 6152 5826 1421 72 2 13 chr9 24120673 24120883 -118150561 + L1PA4 LINE L1 5691 5862 -293 1223 292 70 19 chr9 24120883 24121396 -118150048 - ERVL-C1 LTR ERVL -5225 539 1 1084 269 6 55 chr9 24121396 24121761 -118149683 - MLT2C1 LTR ERVL 0 397 51 648 168 77 28 chr9 24122834 24122977 -118148467 + MLT1B LTR MaLR 3 152 -238 1565 194 47 10 chr9 24122981 24123338 -118148106 - AluJb SINE Alu 0 370 3 897 220 12 75 chr9 24123339 24123594 -118147850 + MLT1B LTR MaLR 152 390 0 1178 253 25 52 chr9 24123980 24124388 -118147056 + MLT2C1 LTR ERVL 1 397 0 1223 292 70 19 chr9 24124388 24124901 -118146543 + ERVL-C1 LTR ERVL 1 539 -5225 1812 56 3 2 chr9 24124901 24125143 -118146301 - L1PA4 LINE L1 -292 5863 5655 * 2412 77 15 3 chr9 24125107 24125433 -118146011 + L1PA4 LINE L1 5826 6155 0 490 307 7 0 chr9 24125433 24125570 -118145874 + ERVL-C1 LTR ERVL 563 700 -5064 970 256 12 8 chr9 24125672 24125922 -118145522 - MLT1D LTR MaLR -5 500 250 573 150 9 62 chr9 24126022 24126135 -118145309 - MLT1D LTR MaLR -398 107 1 817 223 93 40 chr9 24126281 24126640 -118144804 - L1ME3A LINE L1 -13 6151 5768 730 263 62 0 chr9 24126649 24126843 -118144601 - MER58A DNA MER1_type 0 224 19 483 255 166 0 chr9 24126853 24127010 -118144434 - L1ME3A LINE L1 -424 5746 5564 328 120 0 0 chr9 24127071 24127121 -118144323 + MADE1 DNA Mariner 1 50 -30 22 0 0 0 chr9 24128214 24128236 -118143208 + AT_rich Low_complexity Low_complexity 1 22 0 216 336 9 82 chr9 24129680 24129790 -118141654 - MIR3 SINE MIR 0 208 107 3301 42 2 0 chr9 24130835 24131237 -118140207 - L1PA6 LINE L1 -5 6149 5747 6780 65 8 4 chr9 24131762 24133288 -118138156 - L1PA7 LINE L1 -13 6141 4612 201 175 0 0 chr9 24134686 24134726 -118136718 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 198 313 41 95 chr9 24134992 24135139 -118136305 + MIR SINE MIR 47 185 -77 480 315 27 12 chr9 24136516 24136703 -118134741 + MLT1H LTR MaLR 23 198 -351 183 167 0 0 chr9 24136793 24136835 -118134609 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 348 274 74 47 chr9 24137123 24137313 -118134131 - L2 LINE L2 -4 3309 3115 811 339 31 45 chr9 24137642 24138095 -118133349 - L2 LINE L2 -246 3026 2574 317 241 37 37 chr9 24138159 24138267 -118133177 - MLT1H LTR MaLR -10 539 432 1216 151 18 49 chr9 24138442 24138667 -118132777 - AluJo SINE Alu -21 291 74 22 35 0 0 chr9 24138671 24138700 -118132744 + AT_rich Low_complexity Low_complexity 1 29 0 264 365 52 17 chr9 24138854 24138969 -118132475 - L2 LINE L2 -20 3252 3134 24 0 0 0 chr9 24140032 24140056 -118131388 + AT_rich Low_complexity Low_complexity 1 24 0 568 342 141 18 chr9 24140418 24141026 -118130418 + L2 LINE L2 1882 2564 -750 291 217 36 24 chr9 24141565 24141648 -118129796 - L1ME3A LINE L1 -526 5595 5512 6324 34 22 0 chr9 24141649 24142413 -118129031 + L1PA4 LINE L1 5372 6152 -3 259 338 66 5 chr9 24142431 24142629 -118128815 - L1ME3A LINE L1 -2282 5526 5317 378 307 150 29 chr9 24142696 24143027 -118128417 - L1ME3A LINE L1 -912 5234 4826 438 20 0 0 chr9 24143027 24143078 -118128366 + (CA)n Simple_repeat Simple_repeat 2 52 0 378 307 150 29 chr9 24143078 24143225 -118128219 - L1ME3A LINE L1 -1320 4826 4698 242 302 79 36 chr9 24143919 24144058 -118127386 + MIR SINE MIR 108 252 -10 24 0 0 0 chr9 24144520 24144544 -118126900 + AT_rich Low_complexity Low_complexity 1 24 0 360 274 53 26 chr9 24146413 24146526 -118124918 - L2 LINE L2 -20 3293 3178 233 304 72 0 chr9 24147133 24147202 -118124242 + L2 LINE L2 3189 3262 -10 1823 151 19 29 chr9 24147328 24147640 -118123804 + AluSx SINE Alu 3 311 -1 297 366 0 52 chr9 24147717 24147851 -118123593 - L2 LINE L2 -179 3093 2967 691 220 33 7 chr9 24147865 24148015 -118123429 - MLT1G1 LTR MaLR 0 595 442 428 233 128 39 chr9 24148025 24148205 -118123239 - MLT1G1 LTR MaLR -244 286 91 347 401 75 22 chr9 24148478 24149127 -118122317 - L2 LINE L2 -582 2732 2049 2154 96 0 40 chr9 24150082 24150385 -118121059 - AluSg SINE Alu -19 291 1 348 297 109 30 chr9 24150627 24150829 -118120615 - MIR SINE MIR -44 218 1 449 228 0 39 chr9 24150870 24150997 -118120447 - L1MB8 LINE L1 -7 6171 6050 42647 33 21 2 chr9 24151166 24157196 -118114248 - L1PA2 LINE L1 -4 6151 5 201 324 26 8 chr9 24157703 24157848 -118113596 + MIR SINE MIR 77 249 -13 * 205 255 21 0 chr9 24157817 24157864 -118113580 + L2 LINE L2 3264 3311 -2 249 327 87 72 chr9 24158060 24158268 -118113176 + MIR SINE MIR 47 257 -5 294 298 101 36 chr9 24158465 24158633 -118112811 + MIR SINE MIR 84 262 0 540 354 91 31 chr9 24161694 24162314 -118109130 + L2 LINE L2 2616 3272 0 2077 118 3 0 chr9 24162356 24162645 -118108799 + AluSx SINE Alu 18 307 -5 656 308 39 5 chr9 24162811 24163019 -118108425 + MIR SINE MIR 14 228 -34 6517 144 108 93 chr9 24164694 24166364 -118105080 - pTR5 LTR ERV1 0 2438 743 200 299 172 23 chr9 24166786 24166873 -118104571 + MIR SINE MIR 63 162 -100 360 293 38 9 chr9 24166919 24167025 -118104419 - MIR SINE MIR -1 261 153 255 346 45 23 chr9 24167576 24167709 -118103735 + MIR SINE MIR 81 216 -46 214 322 217 0 chr9 24168314 24168429 -118103015 + L2 LINE L2 3133 3272 0 411 294 147 28 chr9 24168440 24168651 -118102793 + MIR SINE MIR 8 243 -19 1078 154 11 0 chr9 24168940 24169128 -118102316 + L1PB1 LINE L1 3 192 -6671 13815 160 47 22 chr9 24169135 24169625 -118101819 + L1PB1 LINE L1 634 1111 -5756 2159 98 0 73 chr9 24169625 24169953 -118101491 - AluY SINE Alu -7 304 1 13815 160 47 22 chr9 24169953 24174981 -118096463 + L1PB1 LINE L1 1111 6309 -558 2221 108 0 3 chr9 24174981 24175276 -118096168 + AluY SINE Alu 1 294 -17 13815 160 47 22 chr9 24175276 24175662 -118095782 + L1PB1 LINE L1 6309 6684 -183 278 116 23 23 chr9 24175669 24175755 -118095689 + (TA)n Simple_repeat Simple_repeat 1 86 0 370 318 23 81 chr9 24176863 24177121 -118094323 + MIR SINE MIR 14 256 -6 198 268 144 31 chr9 24177271 24177368 -118094076 - MIR SINE MIR -63 145 38 1441 213 24 71 chr9 24177648 24178057 -118093387 - MLT1B LTR MaLR 0 390 1 924 180 47 43 chr9 24178437 24178648 -118092796 - MER20 DNA MER1_type -3 216 5 696 302 117 11 chr9 24178683 24179041 -118092403 + MLT1L LTR MaLR 220 615 0 207 338 75 25 chr9 24179404 24179564 -118091880 + L2 LINE L2 1934 2101 -1213 195 191 95 48 chr9 24179683 24179767 -118091677 + MIR SINE MIR 117 204 -58 275 293 71 30 chr9 24180585 24180684 -118090760 + MIR SINE MIR 64 166 -96 1781 180 0 10 chr9 24182785 24183090 -118088354 + AluJb SINE Alu 1 302 -10 188 349 198 0 chr9 24184245 24184351 -118087093 - L3 LINE CR1 -16 1561 1435 296 333 0 0 chr9 24184546 24184627 -118086817 - MIR3 SINE MIR -20 188 108 775 210 0 107 chr9 24184813 24185046 -118086398 + MER3 DNA MER1_type 2 209 0 227 295 49 0 chr9 24185188 24185249 -118086195 - MIR SINE MIR -107 101 38 2316 137 54 10 chr9 24185468 24185876 -118085568 + L1PA15 LINE L1 5721 6146 -19 315 62 0 0 chr9 24185915 24185963 -118085481 + L1PA15 LINE L1 6112 6159 -6 263 315 14 0 chr9 24187342 24187415 -118084029 + GA-rich Low_complexity Low_complexity 3 76 0 353 302 139 45 chr9 24187419 24187958 -118083486 + L1M4 LINE L1 4802 5391 -755 756 89 0 0 chr9 24188116 24188245 -118083199 + AluY SINE Alu 181 309 0 219 292 45 34 chr9 24188278 24188367 -118083077 + L2 LINE L2 3136 3225 -47 232 279 135 18 chr9 24188599 24188710 -118082734 + MIR SINE MIR 98 221 -41 290 250 132 35 chr9 24190377 24190521 -118080923 - L2 LINE L2 -925 2389 2232 200 280 151 11 chr9 24190732 24190825 -118080619 + MER5B DNA MER1_type 1 106 -72 195 278 0 19 chr9 24190837 24190891 -118080553 + MER5A DNA MER1_type 136 188 -1 418 242 178 13 chr9 24192769 24192926 -118078518 + MIR SINE MIR 48 230 -32 403 233 48 0 chr9 24193147 24193250 -118078194 - MIR SINE MIR -102 160 53 350 174 29 0 chr9 24193947 24194016 -118077428 + MIR SINE MIR 70 140 -122 244 237 31 103 chr9 24194222 24194319 -118077125 - MIR3 SINE MIR -104 104 15 2187 121 0 6 chr9 24195662 24195975 -118075469 + AluSx SINE Alu 1 311 -1 862 255 22 0 chr9 24196592 24196776 -118074668 + MER5A DNA MER1_type 2 189 0 2505 38 3 35 chr9 24197538 24197851 -118073593 - AluY SINE Alu -8 303 1 479 258 81 53 chr9 24198280 24198455 -118072989 - MIR SINE MIR -34 228 45 2017 141 39 30 chr9 24198455 24198816 -118072628 - THE1B LTR MaLR 0 364 1 479 258 81 53 chr9 24198816 24198849 -118072595 - MIR SINE MIR -217 45 14 341 241 48 60 chr9 24198854 24199020 -118072424 - MER20B DNA MER1_type 0 783 620 1097 220 59 43 chr9 24199020 24199343 -118072101 + L1ME2 LINE L1 5826 6153 -11 1165 283 86 14 chr9 24199537 24200025 -118071419 - MER20B DNA MER1_type -238 545 23 21 36 0 0 chr9 24200387 24200415 -118071029 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr9 24201161 24201200 -118070244 + AT_rich Low_complexity Low_complexity 1 39 0 1147 246 40 63 chr9 24201865 24202222 -118069222 - L1MEc LINE L1 -5932 464 116 1969 149 3 0 chr9 24202222 24202532 -118068912 - AluSx SINE Alu 0 313 3 1147 246 40 63 chr9 24202532 24202603 -118068841 - L1MEc LINE L1 -6280 116 45 1497 265 135 15 chr9 24202706 24203246 -118068198 - MLT1E2 LTR MaLR 0 626 22 183 316 0 86 chr9 24203677 24203794 -118067650 + L2 LINE L2 2960 3066 -206 234 367 0 13 chr9 24204006 24204085 -118067359 + MER5A DNA MER1_type 68 145 -44 235 308 0 0 chr9 24204867 24204919 -118066525 - L2 LINE L2 -88 3184 3133 515 295 112 19 chr9 24205021 24205046 -118066398 + L1ME1 LINE L1 3224 3245 -2901 1772 154 3 25 chr9 24205046 24205332 -118066112 + AluJo SINE Alu 1 280 -32 203 79 26 0 chr9 24205334 24205372 -118066072 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 515 295 112 19 chr9 24205372 24205586 -118065858 + L1ME1 LINE L1 3245 3438 -2708 495 0 0 0 chr9 24205586 24205641 -118065803 + (TA)n Simple_repeat Simple_repeat 2 56 0 515 295 112 19 chr9 24205641 24205773 -118065671 + L1ME1 LINE L1 3438 3634 -2512 3284 258 80 20 chr9 24205797 24207585 -118063859 + L1ME1 LINE L1 3708 5594 -572 718 167 48 12 chr9 24207575 24207743 -118063701 - L1PA15-16 LINE L1 -4577 2272 2099 * 991 266 14 3 chr9 24207742 24208032 -118063412 + L1ME1 LINE L1 5597 5889 -277 983 343 34 38 chr9 24208044 24208656 -118062788 + L1PA16 LINE L1 788 1397 -6177 406 266 53 0 chr9 24208777 24208871 -118062573 + L1PA16 LINE L1 2083 2181 -5400 11020 221 27 61 chr9 24209083 24210614 -118060830 + L1PA16 LINE L1 2183 3765 -3819 2325 98 3 0 chr9 24210614 24210921 -118060523 + AluSq SINE Alu 3 310 -3 11020 221 27 61 chr9 24210921 24212251 -118059193 + L1PA16 LINE L1 3765 5139 -2445 450 0 0 0 chr9 24212251 24212301 -118059143 + (CA)n Simple_repeat Simple_repeat 2 51 0 11020 221 27 61 chr9 24212301 24213293 -118058151 + L1PA16 LINE L1 5139 6163 -1421 542 55 0 0 chr9 24213293 24213366 -118058078 - AluY SINE Alu -13 297 225 1239 56 25 6 chr9 24213366 24213526 -118057918 - AluY SINE Alu -148 163 1 11020 221 27 61 chr9 24213526 24213871 -118057573 + L1PA16 LINE L1 6161 6453 -1131 1506 179 22 8 chr9 24213881 24214149 -118057295 + AluJo SINE Alu 11 282 -30 420 111 0 0 chr9 24214154 24214217 -118057227 + (TA)n Simple_repeat Simple_repeat 2 64 0 316 196 0 72 chr9 24214184 24214281 -118057163 + L1MC4 LINE L1 6614 6703 -1339 5141 148 27 1 chr9 24214293 24215420 -118056024 + L1PA16 LINE L1 6443 7595 -9 234 0 0 0 chr9 24215423 24215449 -118055995 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 810 206 17 127 chr9 24215455 24215746 -118055698 + L1ME1 LINE L1 5878 6136 -30 2182 89 4 0 chr9 24215871 24216151 -118055293 + AluSp SINE Alu 1 281 -32 949 78 7 7 chr9 24216154 24216295 -118055149 + (GAA)n Simple_repeat Simple_repeat 2 142 0 221 290 65 47 chr9 24217023 24217130 -118054314 - L2 LINE L2 -8 3305 3197 307 196 0 0 chr9 24217929 24217980 -118053464 - L2 LINE L2 -1 3312 3262 259 297 127 8 chr9 24219634 24219752 -118051692 + MIR SINE MIR 82 213 -49 375 327 41 8 chr9 24220580 24220737 -118050707 - MIR SINE MIR -62 146 39 207 0 0 0 chr9 24221320 24221343 -118050101 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1284 152 0 0 chr9 24221363 24221554 -118049890 - AluJo SINE Alu -121 191 1 267 339 61 26 chr9 24221742 24221857 -118049587 - L2 LINE L2 0 3272 3154 299 242 10 30 chr9 24222375 24222474 -118048970 - L1MEc LINE L1 -6260 136 40 9346 180 94 48 chr9 24222554 24224346 -118047098 - L1MCa LINE L1 -3947 2479 771 234 0 0 0 chr9 24224346 24224372 -118047072 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1944 147 3 0 chr9 24224374 24224660 -118046784 - AluSq SINE Alu -26 287 1 9346 180 94 48 chr9 24224660 24225357 -118046087 - L1MCa LINE L1 -5655 771 3 2312 168 70 2 chr9 24225417 24225816 -118045628 + MSTB LTR MaLR 1 426 0 290 317 172 17 chr9 24225918 24226098 -118045346 - MIR SINE MIR -19 243 36 28 0 0 0 chr9 24226638 24226666 -118044778 + AT_rich Low_complexity Low_complexity 1 28 0 203 286 20 0 chr9 24227387 24227436 -118044008 + L2 LINE L2 3251 3300 -13 22 35 0 0 chr9 24227824 24227853 -118043591 + AT_rich Low_complexity Low_complexity 1 29 0 918 276 86 20 chr9 24228029 24228380 -118043064 + LTR16B LTR ERVL 88 461 -3 362 310 107 42 chr9 24228794 24229149 -118042295 - L2 LINE L2 -1210 2104 1727 224 223 33 10 chr9 24230333 24230405 -118041039 - MIR SINE MIR -65 143 73 294 91 15 30 chr9 24230961 24231027 -118040417 + (TA)n Simple_repeat Simple_repeat 2 66 0 432 259 23 15 chr9 24232740 24232871 -118038573 + MIR SINE MIR 111 242 -20 341 322 68 17 chr9 24233765 24234057 -118037387 + L1ME4a LINE L1 5548 5854 -267 1949 252 40 1 chr9 24235359 24236016 -118035428 - L1ME LINE L1 -367 5799 5122 885 195 96 44 chr9 24236034 24236306 -118035138 + pTR5 LTR ERV1 743 1028 -1410 4639 79 48 154 chr9 24236385 24237309 -118034135 + LTR12 LTR ERV1 1 826 0 36177 91 7 24 chr9 24237309 24242774 -118028670 + HERV9 LTR ERV1 1 4978 -3421 3080 113 15 12 chr9 24242784 24243476 -118027968 + HERV9 LTR ERV1 504 8399 0 3785 82 300 3 chr9 24243564 24244201 -118027243 + LTR12 LTR ERV1 1 826 0 3560 232 54 26 chr9 24244210 24245365 -118026079 - L1ME LINE L1 -1034 5112 3926 2873 249 107 8 chr9 24245380 24246619 -118024825 - L1ME LINE L1 -2462 3684 2324 232 138 46 15 chr9 24246635 24246700 -118024744 - L1M4 LINE L1 -1768 4378 4312 352 358 30 0 chr9 24246715 24246849 -118024595 - MIR3 SINE MIR -6 202 65 382 168 168 21 chr9 24247266 24247361 -118024083 - MIR SINE MIR -66 196 88 686 266 100 3 chr9 24247447 24247816 -118023628 + MER113 DNA MER1_type? 74 478 -43 188 330 50 40 chr9 24247994 24248094 -118023350 + MER5B DNA MER1_type 77 177 -1 195 100 0 0 chr9 24249576 24249606 -118021838 + (CCG)n Simple_repeat Simple_repeat 2 31 0 395 257 81 113 chr9 24249618 24249999 -118021445 - L1M2 LINE L1 -5707 1142 774 642 122 0 10 chr9 24250459 24250557 -118020887 - AluJb SINE Alu -26 286 190 269 277 0 0 chr9 24255598 24255663 -118015781 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 24 67 0 0 chr9 24256366 24256411 -118015033 + AT_rich Low_complexity Low_complexity 1 45 0 320 265 46 53 chr9 24256727 24256878 -118014566 - L2 LINE L2 0 3313 3164 342 291 101 25 chr9 24257009 24257167 -118014277 + L3 LINE CR1 1254 1423 -154 282 308 67 0 chr9 24257649 24257753 -118013691 + MIR SINE MIR 78 188 -74 1383 290 117 17 chr9 24258107 24258645 -118012799 - MLT2E LTR ERVL -18 610 19 4834 276 44 13 chr9 24259016 24260626 -118010818 - ERVL LTR ERVL -401 5363 3629 4746 317 47 30 chr9 24260742 24262809 -118008635 - ERVL LTR ERVL -2275 3489 1386 1286 269 101 6 chr9 24262941 24263279 -118008165 - MLT2E LTR ERVL -249 379 10 702 201 40 0 chr9 24263456 24263605 -118007839 - L1MD2 LINE L1 -18 6341 6187 802 280 54 51 chr9 24263668 24263982 -118007462 - L2 LINE L2 -609 2705 2391 421 282 85 16 chr9 24264218 24264654 -118006790 + L1M4 LINE L1 2922 3387 -2759 24 91 0 0 chr9 24265047 24265113 -118006331 + AT_rich Low_complexity Low_complexity 1 66 0 360 111 0 0 chr9 24265255 24265309 -118006135 + (TG)n Simple_repeat Simple_repeat 1 54 0 284 276 47 63 chr9 24265314 24265441 -118006003 - MIR SINE MIR -117 145 21 613 248 35 45 chr9 24265659 24265861 -118005583 + MER63A DNA MER1_type 1 200 -10 292 263 26 0 chr9 24265883 24265959 -118005485 - MLT1L LTR MaLR -332 283 206 361 237 146 56 chr9 24266092 24266362 -118005082 + L1M4 LINE L1 4022 4334 -1812 480 132 40 0 chr9 24266377 24266529 -118004915 + (TA)n Simple_repeat Simple_repeat 1 158 0 25 31 0 0 chr9 24266541 24266573 -118004871 + AT_rich Low_complexity Low_complexity 1 32 0 407 281 30 115 chr9 24266604 24266874 -118004570 + L1M4 LINE L1 4330 4576 -1570 623 304 0 39 chr9 24266905 24267109 -118004335 + MIR SINE MIR 36 231 -31 927 285 102 55 chr9 24267483 24267788 -118003656 - L2 LINE L2 0 3313 3024 1705 145 75 34 chr9 24267788 24268146 -118003298 + THE1C LTR MaLR 3 375 0 927 285 102 55 chr9 24268146 24268653 -118002791 - L2 LINE L2 -289 3024 2458 1434 193 19 4 chr9 24268686 24268955 -118002489 + AluJb SINE Alu 20 292 -20 2099 293 140 19 chr9 24269026 24270036 -118001408 - L2 LINE L2 -962 2352 1221 392 329 82 12 chr9 24270089 24270259 -118001185 - LTR33 LTR ERVL -339 182 1 22 56 0 0 chr9 24270406 24270442 -118001002 + AT_rich Low_complexity Low_complexity 1 36 0 2055 105 54 3 chr9 24270840 24271134 -118000310 + AluSc SINE Alu 1 309 0 21 0 0 0 chr9 24271731 24271752 -117999692 + AT_rich Low_complexity Low_complexity 1 21 0 354 298 40 53 chr9 24271991 24272142 -117999302 + MIR SINE MIR 29 177 -85 351 307 84 22 chr9 24272630 24272809 -117998635 - MIR SINE MIR -25 237 48 243 215 0 0 chr9 24272932 24272997 -117998447 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 28 0 0 0 chr9 24273141 24273169 -117998275 + AT_rich Low_complexity Low_complexity 1 28 0 2316 91 7 0 chr9 24275659 24275955 -117995489 + AluSp SINE Alu 1 298 -15 1741 172 3 3 chr9 24276196 24276481 -117994963 - AluJo SINE Alu -23 289 5 384 327 59 45 chr9 24276709 24276911 -117994533 - MLT1I LTR MaLR -177 232 28 202 318 0 0 chr9 24277145 24277211 -117994233 + (ATG)n Simple_repeat Simple_repeat 3 68 0 226 335 171 24 chr9 24277849 24278013 -117993431 - MIR SINE MIR -49 213 26 7315 236 82 58 chr9 24278490 24281136 -117990308 - L1M4 LINE L1 -1197 5760 3179 1602 228 0 0 chr9 24281136 24281426 -117990018 - AluJb SINE Alu -19 293 4 7315 236 82 58 chr9 24281426 24282227 -117989217 - L1M4 LINE L1 -3778 3179 2199 207 0 0 0 chr9 24282227 24282250 -117989194 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7315 236 82 58 chr9 24282250 24282830 -117988614 - L1M4 LINE L1 -4758 2199 1634 813 181 7 0 chr9 24282831 24282992 -117988452 - AluJb SINE Alu 0 308 147 731 221 0 0 chr9 24283003 24283183 -117988261 - FLAM_C SINE Alu 0 182 3 2461 261 115 37 chr9 24283185 24284178 -117987266 - L1M4 LINE L1 -5202 1657 588 249 108 0 0 chr9 24284273 24284310 -117987134 + (CA)n Simple_repeat Simple_repeat 1 37 0 360 83 0 0 chr9 24284642 24284690 -117986754 - L1PA4 LINE L1 -252 5903 5856 2113 28 0 0 chr9 24284690 24284938 -117986506 + L1PA4 LINE L1 5903 6153 -2 180 111 0 0 chr9 24285248 24285275 -117986169 + (GA)n Simple_repeat Simple_repeat 1 27 0 987 139 0 13 chr9 24287032 24287183 -117984261 - MER50 LTR ERV1 -23 711 563 1844 24 0 0 chr9 24287183 24287394 -117984050 - L1P LINE L1 -1834 4312 4102 * 5590 47 0 0 chr9 24287393 24288093 -117983351 + L1P LINE L1 4314 5013 -1133 433 277 124 33 chr9 24288095 24288337 -117983107 - L2 LINE L2 -1 3312 3049 218 218 18 0 chr9 24290066 24290121 -117981323 + T-rich Low_complexity Low_complexity 2 57 0 6402 25 0 0 chr9 24290122 24290866 -117980578 - L1PA3 LINE L1 -3 6152 5409 322 323 124 21 chr9 24291253 24291439 -117980005 + MIR SINE MIR 2 206 -56 503 305 93 49 chr9 24291444 24291690 -117979754 - MIR SINE MIR -5 257 1 2669 268 53 40 chr9 24292037 24292813 -117978631 - L1PA13 LINE L1 -6001 786 1 229 333 67 0 chr9 24293023 24293128 -117978316 + MIR SINE MIR 15 126 -136 4258 223 30 15 chr9 24293626 24295222 -117976222 - L1PA13 LINE L1 -3817 2980 1326 21 0 0 0 chr9 24295936 24295957 -117975487 + AT_rich Low_complexity Low_complexity 1 21 0 342 357 23 50 chr9 24296337 24296595 -117974849 + L1MDa LINE L1 48 298 -6242 1096 249 60 68 chr9 24297154 24297776 -117973668 + L1MDa LINE L1 910 1526 -5017 570 214 38 0 chr9 24297794 24297953 -117973491 + L1MDa LINE L1 1567 1731 -4809 1468 251 69 16 chr9 24297955 24298204 -117973240 + L1MDa LINE L1 2839 3073 -3467 2107 150 0 0 chr9 24298204 24298511 -117972933 + AluSx SINE Alu 1 307 -5 1468 251 69 16 chr9 24298511 24298811 -117972633 + L1MDa LINE L1 3073 3417 -3123 16339 116 10 33 chr9 24298912 24302277 -117969167 - L1P3 LINE L1 -2765 3696 337 22 0 0 0 chr9 24302452 24302474 -117968970 + AT_rich Low_complexity Low_complexity 1 22 0 298 289 141 8 chr9 24303452 24303573 -117967871 + MIR SINE MIR 36 172 -90 1376 182 42 45 chr9 24303624 24303892 -117967552 - L1M3 LINE L1 -571 5600 5332 2016 164 37 8 chr9 24303892 24304271 -117967173 + MLT1B LTR MaLR 1 390 0 1376 182 42 45 chr9 24304271 24304389 -117967055 - L1M3 LINE L1 -839 5332 5215 1903 146 0 28 chr9 24304925 24305246 -117966198 - AluSx SINE Alu 0 312 1 1655 329 93 40 chr9 24305323 24306533 -117964911 + L3 LINE CR1 297 1571 -6 706 211 197 0 chr9 24307157 24307309 -117964135 - MER5A DNA MER1_type -6 183 2 234 263 25 0 chr9 24308158 24308238 -117963206 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 195 353 40 27 chr9 24308597 24308747 -117962697 - L2 LINE L2 -170 3102 2951 333 93 0 0 chr9 24308997 24309051 -117962393 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 318 167 0 0 chr9 24311819 24311879 -117959565 + C-rich Low_complexity Low_complexity 3 62 0 207 323 204 14 chr9 24311920 24312140 -117959304 - MIR SINE MIR 0 262 1 2329 25 4 4 chr9 24312526 24312806 -117958638 - L1PA5 LINE L1 -1 6153 5874 1747 20 5 0 chr9 24312806 24313008 -117958436 + L1PA5 LINE L1 5673 5875 -280 5955 124 28 3 chr9 24313871 24314831 -117956613 + Tigger3b DNA MER2_type 247 1230 -1 1792 131 39 26 chr9 24315170 24315475 -117955969 - AluSx SINE Alu -3 309 1 187 296 0 37 chr9 24316031 24316085 -117955359 + L3 LINE CR1 1520 1571 -6 2131 84 36 4 chr9 24316406 24316681 -117954763 + AluY SINE Alu 7 290 -21 367 326 42 37 chr9 24317353 24317543 -117953901 + MIR SINE MIR 66 256 -6 249 221 0 73 chr9 24317517 24317585 -117953859 - L2 LINE L2 0 3313 3251 * 201 355 51 43 chr9 24319145 24319401 -117952043 + L2 LINE L2 2143 2400 -914 6627 85 0 0 chr9 24319583 24321003 -117950441 - L1PA8 LINE L1 -7 6165 4743 420 20 0 0 chr9 24321073 24321122 -117950322 + (CA)n Simple_repeat Simple_repeat 1 49 0 192 125 0 0 chr9 24321870 24321902 -117949542 + (TC)n Simple_repeat Simple_repeat 2 33 0 252 59 0 0 chr9 24321902 24321936 -117949508 + (CA)n Simple_repeat Simple_repeat 1 34 0 11905 95 9 2 chr9 24322077 24322126 -117949318 + L1PA7 LINE L1 3651 3698 -2461 2037 134 13 7 chr9 24322126 24322433 -117949011 + AluSc SINE Alu 1 309 0 11905 95 9 2 chr9 24322433 24324896 -117946548 + L1PA7 LINE L1 3698 6159 0 503 305 93 49 chr9 24325662 24325908 -117945536 + MIR SINE MIR 1 257 -5 322 323 124 21 chr9 24325913 24326099 -117945345 - MIR SINE MIR -56 206 2 4752 96 24 63 chr9 24326486 24327278 -117944166 + L1PA8 LINE L1 5409 6169 -3 4972 149 61 8 chr9 24327282 24328405 -117943039 + L1PA15 LINE L1 4976 6163 -2 220 247 31 62 chr9 24328508 24328605 -117942839 - L2 LINE L2 -62 3251 3158 533 371 20 33 chr9 24328740 24329193 -117942251 - L2 LINE L2 -157 3156 2717 321 117 70 0 chr9 24329245 24329373 -117942071 + (TA)n Simple_repeat Simple_repeat 1 137 0 358 290 11 0 chr9 24329373 24329466 -117941978 + L2 LINE L2 2566 2659 -655 244 113 65 16 chr9 24329466 24329531 -117941913 + (TTATA)n Simple_repeat Simple_repeat 1 68 0 1759 164 35 35 chr9 24329565 24329938 -117941506 - L1MB1 LINE L1 -10 6158 5786 4818 197 19 28 chr9 24329989 24330078 -117941366 - L1MB1 LINE L1 -376 5792 5704 2397 50 0 0 chr9 24330078 24330390 -117941054 + AluY SINE Alu 1 312 0 4818 197 19 28 chr9 24330390 24331911 -117939533 - L1MB1 LINE L1 -464 5704 4195 874 144 0 78 chr9 24331930 24332110 -117939334 - L1M3 LINE L1 -551 5620 5455 1098 212 22 22 chr9 24332122 24332188 -117939256 - L1MB1 LINE L1 -1960 4186 4121 1321 186 110 15 chr9 24332188 24332516 -117938928 + MER46B DNA MER2_type 1 234 -2 1098 212 22 22 chr9 24332516 24332723 -117938721 - L1MB1 LINE L1 -2024 4122 3913 1373 198 44 47 chr9 24332738 24333101 -117938343 + MER67D LTR ERV1 153 514 0 202 263 105 21 chr9 24333103 24333178 -117938266 - L2 LINE L2 -1254 2060 1974 2249 191 19 5 chr9 24333178 24333598 -117937846 - MSTB LTR MaLR 0 426 1 202 263 105 21 chr9 24333598 24333617 -117937827 - L2 LINE L2 -1340 1974 1958 1043 314 115 47 chr9 24334555 24335086 -117936358 - MLT1G1 LTR MaLR -24 571 5 230 319 26 26 chr9 24335089 24335202 -117936242 - MLT1G1-int LTR MaLR -11 1724 1612 1901 158 153 5 chr9 24335240 24335613 -117935831 + MSTA LTR MaLR 1 428 0 2181 132 24 16 chr9 24335800 24336172 -117935272 - THE1C LTR MaLR 0 375 1 424 250 0 61 chr9 24336769 24336901 -117934543 - MLT1G1-int LTR MaLR -793 578 455 338 313 17 0 chr9 24337070 24337185 -117934259 - MLT1G1-int LTR MaLR -1614 121 5 543 296 126 5 chr9 24337203 24337402 -117934042 - MLT1G1 LTR MaLR -15 580 358 23 0 0 0 chr9 24337536 24337559 -117933885 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 24337646 24337683 -117933761 + AT_rich Low_complexity Low_complexity 1 37 0 23543 33 0 0 chr9 24337683 24341310 -117930134 - L1PA4 LINE L1 -7 6148 2522 10748 51 0 2 chr9 24341310 24342682 -117928762 + L1PA4 LINE L1 1144 2512 -3634 3093 218 7 56 chr9 24342679 24343501 -117927943 - L1P LINE L1 -1155 4991 4210 * 2088 120 76 12 chr9 24343501 24343843 -117927601 + THE1B LTR MaLR 1 364 0 11367 106 4 6 chr9 24343843 24345426 -117926018 + THE1B-int LTR MaLR 1 1580 0 1005 127 100 0 chr9 24345429 24345579 -117925865 + THE1B LTR MaLR 4 168 -196 16379 146 7 13 chr9 24345587 24347884 -117923560 + L1PA10 LINE L1 2423 4734 -1434 225 65 0 0 chr9 24347884 24347915 -117923529 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 16379 146 7 13 chr9 24347915 24348551 -117922893 + L1PA10 LINE L1 4734 5373 -795 2021 140 0 16 chr9 24348551 24348866 -117922578 + AluSg SINE Alu 1 310 0 16379 146 7 13 chr9 24348866 24349628 -117921816 + L1PA10 LINE L1 5373 6159 -9 3142 261 14 14 chr9 24349633 24350473 -117920971 - L1P LINE L1 -2792 3354 2512 2269 97 0 13 chr9 24350473 24350784 -117920660 + AluY SINE Alu 1 307 -4 3142 261 14 14 chr9 24350784 24350913 -117920531 - L1P LINE L1 -3633 2513 2385 21 0 0 0 chr9 24351062 24351083 -117920361 + AT_rich Low_complexity Low_complexity 1 21 0 320 309 82 82 chr9 24351126 24351430 -117920014 + L2 LINE L2 2550 2853 -461 282 304 0 0 chr9 24351503 24351582 -117919862 + L2 LINE L2 2994 3072 -241 281 393 65 0 chr9 24351609 24351777 -117919667 - L2 LINE L2 -1723 1591 1413 2036 260 123 28 chr9 24352162 24352974 -117918470 - L1ME1 LINE L1 -18 6148 5260 500 246 14 90 chr9 24353054 24353331 -117918113 - L1ME1 LINE L1 -1081 5065 4810 536 101 13 0 chr9 24353341 24353420 -117918024 + MADE1 DNA Mariner 1 80 0 2469 242 97 63 chr9 24353422 24354825 -117916619 - L1ME1 LINE L1 -1610 4536 3086 12967 147 40 18 chr9 24355746 24358110 -117913334 + Tigger1 DNA MER2_type 2 2418 0 21 57 0 0 chr9 24358110 24358145 -117913299 + AT_rich Low_complexity Low_complexity 1 35 0 337 178 51 68 chr9 24358223 24358294 -117913150 + L1M4 LINE L1 3129 3199 -2947 1520 220 13 32 chr9 24358294 24358672 -117912772 - MLT1A2 LTR MaLR 0 374 4 337 178 51 68 chr9 24358672 24358718 -117912726 + L1M4 LINE L1 3199 3244 -2902 673 155 0 0 chr9 24359082 24359185 -117912259 - AluSq/x SINE Alu -210 103 1 494 158 32 21 chr9 24359193 24359288 -117912156 - MLT1G1 LTR MaLR -499 96 1 277 308 50 12 chr9 24359289 24359451 -117911993 + L1ME1 LINE L1 5489 5664 -2144 4917 166 43 21 chr9 24359557 24360454 -117910990 + MER21A LTR ERV1 9 925 -6 21 0 0 0 chr9 24360501 24360522 -117910922 + AT_rich Low_complexity Low_complexity 1 21 0 367 215 51 63 chr9 24361009 24361167 -117910277 + L1ME1 LINE L1 5990 6145 -21 634 208 49 6 chr9 24361171 24361354 -117910090 + L1M4 LINE L1 2807 2997 -3149 240 111 0 0 chr9 24361355 24361391 -117910053 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 635 210 0 0 chr9 24361391 24361515 -117909929 - FRAM SINE Alu -30 146 23 580 251 13 18 chr9 24361523 24361750 -117909694 + L1M4 LINE L1 3003 3228 -2918 1482 234 63 35 chr9 24362525 24363016 -117908428 - MLT1D LTR MaLR 0 505 1 37 0 0 0 chr9 24363139 24363176 -117908268 + AT_rich Low_complexity Low_complexity 1 37 0 404 329 48 16 chr9 24365219 24365427 -117906017 + MER20B DNA MER1_type 3 219 0 599 292 43 53 chr9 24367557 24367838 -117903606 - MLT1J LTR MaLR -231 280 3 35 41 0 0 chr9 24367974 24368023 -117903421 + AT_rich Low_complexity Low_complexity 1 49 0 565 269 23 50 chr9 24368180 24368399 -117903045 + MIR SINE MIR 7 219 -43 225 363 12 0 chr9 24369265 24369345 -117902099 - L2 LINE L2 -49 3264 3184 642 258 22 29 chr9 24369696 24370060 -117901384 - MLT1I LTR MaLR -2 407 1 34 0 6 41 chr9 24370157 24370254 -117901190 + AT_rich Low_complexity Low_complexity 1 50 0 516 237 143 63 chr9 24370299 24370609 -117900835 - MLT1J LTR MaLR -8 607 172 22 0 0 0 chr9 24371466 24371488 -117899956 + AT_rich Low_complexity Low_complexity 1 22 0 593 230 199 11 chr9 24371755 24371946 -117899498 - MIR SINE MIR -4 258 32 2338 270 53 76 chr9 24371980 24373103 -117898341 + L2 LINE L2 2195 3313 0 398 375 118 16 chr9 24373162 24373466 -117897978 + L2 LINE L2 2934 3268 -4 229 280 0 0 chr9 24373469 24373519 -117897925 + Tigger3(Golem) DNA MER2_type 1 50 -2979 190 164 36 0 chr9 24373688 24373743 -117897701 + (TA)n Simple_repeat Simple_repeat 1 57 0 307 336 16 56 chr9 24374476 24374601 -117896843 - MIR SINE MIR -70 138 19 185 343 225 11 chr9 24375718 24376251 -117895193 + L2 LINE L2 2025 2671 -643 1393 199 11 31 chr9 24376452 24376739 -117894705 + AluJo SINE Alu 1 281 -31 564 291 24 35 chr9 24376892 24377104 -117894340 + MIR SINE MIR 55 262 0 229 195 0 0 chr9 24377166 24377207 -117894237 + MIR SINE MIR 212 252 -10 187 407 23 0 chr9 24378712 24378798 -117892646 + L2 LINE L2 3185 3272 0 5705 163 25 9 chr9 24378836 24379956 -117891488 - L1MC1 LINE L1 -9 6324 5186 229 268 96 22 chr9 24380113 24380214 -117891230 - MER5A DNA MER1_type -48 141 21 743 244 157 14 chr9 24382721 24382938 -117888506 + MIR SINE MIR 4 251 -11 270 158 36 17 chr9 24383527 24383600 -117887844 + L1ME3 LINE L1 6092 6166 0 712 209 20 0 chr9 24384176 24384329 -117887115 - L1PB4 LINE L1 -2 6154 5999 26 0 0 0 chr9 24385517 24385543 -117885901 + AT_rich Low_complexity Low_complexity 1 26 0 2152 49 0 81 chr9 24386014 24386363 -117885081 + AluY SINE Alu 1 324 0 2405 99 15 46 chr9 24387110 24387522 -117883922 - L1MA2 LINE L1 0 6304 5906 543 346 0 36 chr9 24387687 24387924 -117883520 - MIR SINE MIR 0 262 38 504 309 61 6 chr9 24388365 24388546 -117882898 + MIR SINE MIR 2 192 -70 42136 52 4 2 chr9 24388550 24393898 -117877546 + L1P LINE L1 4 5363 -783 1076 286 40 6 chr9 24494063 24494523 -117776921 - L1MC4 LINE L1 -98 7710 7222 3791 122 16 21 chr9 24494526 24495142 -117776302 - L1PA13 LINE L1 -4 6159 5547 1448 240 128 30 chr9 24495143 24495706 -117775738 - L1MC4 LINE L1 -961 7081 6464 186 209 0 0 chr9 24496133 24496176 -117775268 + GA-rich Low_complexity Low_complexity 5 47 0 254 245 0 0 chr9 24499318 24499371 -117772073 + MSTD LTR MaLR 2 54 -342 * 393 216 0 0 chr9 24499369 24499443 -117772001 - MSTD LTR MaLR -272 124 51 * 1004 241 96 25 chr9 24499423 24499532 -117771912 + MSTD LTR MaLR 51 151 -245 2398 92 0 0 chr9 24499532 24499838 -117771606 - AluSg SINE Alu -4 306 1 1004 241 96 25 chr9 24499838 24500051 -117771393 + MSTD LTR MaLR 151 396 0 2287 266 24 17 chr9 24500052 24500798 -117770646 + MSTD-int LTR MaLR 107 835 -816 2170 248 102 0 chr9 24500872 24501393 -117770051 + MSTD-int LTR MaLR 1159 1732 -3 932 202 126 60 chr9 24501399 24501735 -117769709 + MLT1A1 LTR MaLR 4 365 0 1891 198 19 0 chr9 24503204 24503563 -117767881 - MER47A DNA MER2_type 0 366 1 237 217 72 0 chr9 24503731 24503800 -117767644 - MIR SINE MIR -10 252 179 203 228 0 35 chr9 24504062 24504119 -117767325 + GA-rich Low_complexity Low_complexity 1 55 0 1867 121 0 11 chr9 24505622 24505894 -117765550 + AluSx SINE Alu 7 275 -37 231 286 55 0 chr9 24505961 24506052 -117765392 + L1ME2 LINE L1 259 354 -6209 411 317 73 31 chr9 24506532 24506819 -117764625 + L1ME2 LINE L1 825 1123 -5249 822 289 96 47 chr9 24506833 24507014 -117764430 + L1ME2 LINE L1 1041 1212 -5351 186 43 0 0 chr9 24507014 24507037 -117764407 + (CAA)n Simple_repeat Simple_repeat 2 24 0 822 289 96 47 chr9 24507037 24507735 -117763709 + L1ME2 LINE L1 1212 2118 -4445 1548 325 50 21 chr9 24507757 24509038 -117762406 - L1MEc LINE L1 -5006 1390 73 2548 234 109 55 chr9 24509069 24510459 -117760985 + L1ME2 LINE L1 4275 5754 -648 1608 88 0 0 chr9 24510474 24510689 -117760755 - L1PA8 LINE L1 -1947 4199 3985 7692 110 8 3 chr9 24510690 24512660 -117758784 + L1PA8 LINE L1 4193 6179 0 1347 255 13 83 chr9 24512660 24513202 -117758242 + L1ME2 LINE L1 5785 6288 -112 658 192 54 36 chr9 24513203 24513370 -117758074 + MER3 DNA MER1_type 2 124 -85 240 284 0 0 chr9 24513415 24513489 -117757955 + L1ME1 LINE L1 6088 6161 -5 521 325 46 16 chr9 24513904 24514098 -117757346 - MLT1I LTR MaLR -33 376 177 1990 136 0 0 chr9 24514335 24514644 -117756800 + AluSx SINE Alu 3 311 0 216 97 0 0 chr9 24515718 24515749 -117755695 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 86 0 0 chr9 24516144 24516179 -117755265 + (GA)n Simple_repeat Simple_repeat 2 36 0 2013 147 0 0 chr9 24516639 24516931 -117754513 + AluSx SINE Alu 6 297 -15 375 265 180 32 chr9 24518407 24518596 -117752848 - MLT1J LTR MaLR -61 450 234 521 259 21 28 chr9 24519106 24519249 -117752195 + MIR SINE MIR 1 142 -120 301 234 43 21 chr9 24520452 24520546 -117750898 + MIR SINE MIR 110 205 -57 436 292 67 58 chr9 24521623 24521863 -117749581 + MIR SINE MIR 19 260 -2 294 219 41 8 chr9 24522051 24522174 -117749270 + (TA)n Simple_repeat Simple_repeat 2 128 0 408 290 125 27 chr9 24522666 24522890 -117748554 - MIR SINE MIR -4 258 13 429 305 122 64 chr9 24523099 24523427 -117748017 + L3 LINE CR1 1173 1519 -58 743 195 5 80 chr9 24523524 24523724 -117747720 + MLT1A1 LTR MaLR 1 185 -180 885 223 64 32 chr9 24523731 24523951 -117747493 - MLT1A1 LTR MaLR -13 352 126 22 0 0 0 chr9 24524475 24524497 -117746947 + AT_rich Low_complexity Low_complexity 1 22 0 2064 149 5 27 chr9 24524627 24524995 -117746449 - MER46B DNA MER2_type -1 235 1 2570 55 3 0 chr9 24526638 24526947 -117744497 - AluY SINE Alu -1 310 1 414 0 0 0 chr9 24527244 24527290 -117744154 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 2037 55 0 12 chr9 24527290 24527543 -117743901 - AluY SINE Alu -32 279 30 220 306 144 69 chr9 24529194 24529354 -117742090 + MIR SINE MIR 21 192 -70 285 98 0 0 chr9 24529373 24529414 -117742030 + (T)n Simple_repeat Simple_repeat 1 41 0 362 360 34 17 chr9 24530080 24530258 -117741186 - MER5A DNA MER1_type -2 187 7 2167 100 0 53 chr9 24530812 24531133 -117740311 + AluSc SINE Alu 1 304 -5 288 338 0 0 chr9 24532541 24532621 -117738823 - MIR SINE MIR -84 124 45 436 285 51 7 chr9 24532766 24532903 -117738541 + MIR SINE MIR 26 168 -94 381 250 32 70 chr9 24535192 24535348 -117736096 + MIR SINE MIR 57 206 -56 261 0 0 0 chr9 24537501 24537530 -117733914 + (CAA)n Simple_repeat Simple_repeat 2 30 0 485 226 0 7 chr9 24537689 24537826 -117733618 + CT-rich Low_complexity Low_complexity 1 136 0 2464 75 128 8 chr9 24537833 24538233 -117733211 - LTR7 LTR ERV1 -2 448 1 2274 106 50 13 chr9 24538233 24538609 -117732835 - HERVH LTR ERV1 0 7713 7324 1343 143 19 0 chr9 24538609 24538825 -117732619 - HERVH LTR ERV1 -1894 5819 5600 3678 149 9 2 chr9 24538826 24539397 -117732047 - HERVH LTR ERV1 -2564 5149 4575 1317 104 0 0 chr9 24539394 24539577 -117731867 - HERVH LTR ERV1 -3043 4670 4488 * 3533 75 20 6 chr9 24539579 24540074 -117731370 - HERVH LTR ERV1 -3720 3993 3492 868 154 20 0 chr9 24540064 24540213 -117731231 - HERVH LTR ERV1 -4423 3290 3139 * 15209 99 27 8 chr9 24540206 24542478 -117728966 - HERVH LTR ERV1 -4726 2987 672 3747 100 0 2 chr9 24542445 24542964 -117728480 - HERVH LTR ERV1 -7195 518 1 * 2368 89 127 15 chr9 24542966 24543369 -117728075 - LTR7 LTR ERV1 -2 448 1 687 250 6 6 chr9 24543705 24543861 -117727583 - MLT1D LTR MaLR 0 505 350 6110 155 31 38 chr9 24543861 24544124 -117727320 - L1M2 LINE L1 -619 5672 5409 2141 132 0 3 chr9 24544124 24544428 -117727016 - AluSg SINE Alu -7 303 1 6110 155 31 38 chr9 24544428 24545727 -117725717 - L1M2 LINE L1 -882 5409 4133 206 310 0 17 chr9 24545760 24545818 -117725626 + L2 LINE L2 2995 3051 -262 246 348 107 27 chr9 24545986 24546098 -117725346 + L2 LINE L2 3143 3263 -9 182 265 15 0 chr9 24548335 24548403 -117723041 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 397 236 81 61 chr9 24548608 24548787 -117722657 + MER77 LTR ERV1 181 321 -241 356 213 32 21 chr9 24548851 24548945 -117722499 + MER21B LTR ERV1 620 714 -149 716 292 43 26 chr9 24549611 24549844 -117721600 - MIR SINE MIR -24 238 2 312 341 120 55 chr9 24549930 24550346 -117721098 + L2 LINE L2 2817 3259 -13 321 68 0 0 chr9 24550674 24550718 -117720726 + (TG)n Simple_repeat Simple_repeat 2 45 0 371 320 0 10 chr9 24551806 24551906 -117719538 - MIR SINE MIR -161 101 3 683 201 6 0 chr9 24553775 24553939 -117717505 + GA-rich Low_complexity Low_complexity 3 167 0 403 291 82 0 chr9 24555719 24555853 -117715591 - MIR SINE MIR -48 214 70 1924 200 25 73 chr9 24556220 24556751 -117714693 - MLT1D LTR MaLR 0 505 1 191 273 36 0 chr9 24558697 24558752 -117712692 - MIR SINE MIR -186 76 20 305 344 24 0 chr9 24558766 24558891 -117712553 + MIR3 SINE MIR 56 183 -25 207 0 0 0 chr9 24560028 24560051 -117711393 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1007 47 78 0 chr9 24561124 24561253 -117710191 + MER85 DNA T2_type 1 139 0 318 261 22 0 chr9 24563318 24563410 -117708034 + CT-rich Low_complexity Low_complexity 3 96 0 287 311 246 12 chr9 24563481 24563802 -117707642 - L3b LINE CR1 -86 1497 1102 180 176 0 0 chr9 24564579 24564613 -117706831 + (TG)n Simple_repeat Simple_repeat 1 34 0 382 293 44 47 chr9 24564875 24565048 -117706396 - MIR3 SINE MIR -64 144 1 34 0 0 0 chr9 24565212 24565246 -117706198 + AT_rich Low_complexity Low_complexity 1 34 0 2007 145 14 0 chr9 24566033 24566329 -117705115 + AluSx SINE Alu 1 300 -12 5721 76 43 34 chr9 24566912 24567731 -117703713 + LTR12 LTR ERV1 1 826 0 231 387 60 2 chr9 24567964 24568079 -117703365 + MIR SINE MIR 8 127 -81 697 279 139 0 chr9 24568142 24568350 -117703094 + MIR SINE MIR 19 255 -7 757 250 144 45 chr9 24568559 24569186 -117702258 + L1ME3A LINE L1 5443 6160 -10 1309 320 34 2 chr9 24569879 24570291 -117701153 - LTR16A LTR ERVL -5 445 21 518 308 72 20 chr9 24570610 24570987 -117700457 - HERV16 LTR ERVL -307 5049 4555 498 352 56 54 chr9 24571325 24572447 -117698997 - HERV16 LTR ERVL -1326 4159 3142 337 349 81 0 chr9 24572558 24572707 -117698737 - HERV16 LTR ERVL -4273 723 563 637 347 48 18 chr9 24572740 24573077 -117698367 - LTR16A LTR ERVL -88 362 16 226 222 19 37 chr9 24574113 24574167 -117697277 + MIR SINE MIR 210 262 0 276 149 0 0 chr9 24574309 24574356 -117697088 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 234 298 10 39 chr9 24574374 24574478 -117696966 - MIR SINE MIR -148 114 14 180 0 0 0 chr9 24575830 24575850 -117695594 + (TTATA)n Simple_repeat Simple_repeat 3 22 0 315 0 0 0 chr9 24576613 24576648 -117694796 + (TG)n Simple_repeat Simple_repeat 1 35 0 213 359 16 0 chr9 24577030 24577094 -117694350 - L2 LINE L2 -67 3205 3141 363 286 65 36 chr9 24578320 24578488 -117692956 + MIR SINE MIR 78 250 -12 861 207 140 98 chr9 24578631 24578959 -117692485 - MER90 LTR ERV1 -233 342 1 379 283 128 82 chr9 24578995 24579409 -117692035 + L3 LINE CR1 1117 1549 -28 19127 33 2 0 chr9 24579888 24582983 -117688461 - L1PA3 LINE L1 0 6155 3060 489 281 100 6 chr9 24584100 24584260 -117687184 + MIR SINE MIR 83 257 -5 24 53 0 0 chr9 24585743 24585781 -117685663 + AT_rich Low_complexity Low_complexity 1 38 0 2518 74 0 0 chr9 24586038 24586349 -117685095 + AluY SINE Alu 1 311 0 438 263 74 47 chr9 24586699 24587064 -117684380 + L1M4 LINE L1 2933 3307 -2839 434 332 71 8 chr9 24587312 24587580 -117683864 - HAL1b LINE L1 -713 635 351 4134 227 67 22 chr9 24587680 24588861 -117682583 - L1MB7 LINE L1 -31 6389 5263 1564 175 66 66 chr9 24588861 24589255 -117682189 - MSTD LTR MaLR 0 396 3 4134 227 67 22 chr9 24589255 24589268 -117682176 - L1MB7 LINE L1 -1157 5263 5252 1609 179 39 0 chr9 24589268 24589553 -117681891 + AluJb SINE Alu 1 296 -16 4134 227 67 22 chr9 24589553 24590415 -117681029 - L1MB7 LINE L1 -1168 5252 4238 1150 319 30 3 chr9 24590476 24590840 -117680604 + MER70B LTR ERVL 77 450 -128 1618 246 41 41 chr9 24590960 24591350 -117680094 - L1MB7 LINE L1 -2139 4243 3854 2084 168 28 17 chr9 24591350 24591708 -117679736 + THE1B LTR MaLR 3 364 0 10979 111 4 3 chr9 24591708 24593286 -117678158 + THE1B-int LTR MaLR 1 1580 0 2086 138 16 35 chr9 24593286 24593657 -117677787 + THE1B LTR MaLR 1 364 0 1618 246 41 41 chr9 24593657 24593781 -117677663 - L1MB7 LINE L1 -2525 3857 3727 1079 273 50 43 chr9 24593833 24594820 -117676624 - L1MB7 LINE L1 -3749 2638 1543 252 0 0 0 chr9 24594820 24594848 -117676596 + (T)n Simple_repeat Simple_repeat 1 28 0 1020 236 10 10 chr9 24595055 24595352 -117676092 - AluSx SINE Alu -1 311 15 3518 249 62 100 chr9 24595772 24596204 -117675240 - L1M4c LINE L1 -4644 2002 1555 2399 106 0 0 chr9 24596204 24596515 -117674929 - AluSx SINE Alu -1 311 1 3518 249 62 100 chr9 24596515 24598112 -117673332 - L1M4c LINE L1 -5091 1555 1 214 195 52 0 chr9 24599156 24599233 -117672211 + (TA)n Simple_repeat Simple_repeat 2 82 0 25 0 0 0 chr9 24599317 24599342 -117672102 + AT_rich Low_complexity Low_complexity 1 25 0 787 170 7 7 chr9 24600960 24601095 -117670349 + AluSp SINE Alu 2 136 -177 837 254 22 17 chr9 24601100 24601332 -117670112 - L1MB7 LINE L1 -228 5956 5724 222 174 0 0 chr9 24601395 24601441 -117670003 + CT-rich Low_complexity Low_complexity 4 49 0 385 330 28 23 chr9 24603708 24603926 -117667518 + MLT1J1 LTR MaLR 3 221 -225 22 0 0 0 chr9 24604951 24604973 -117666471 + AT_rich Low_complexity Low_complexity 1 22 0 367 368 72 34 chr9 24605187 24605478 -117665966 + L1ME2 LINE L1 410 711 -5408 2610 238 87 7 chr9 24605480 24606078 -117665366 + MER82 DNA MER2_type 1 646 -7 7155 34 4 2 chr9 24606314 24606563 -117664881 - L1PA4 LINE L1 0 6155 5908 261 0 0 0 chr9 24606563 24606592 -117664852 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7155 34 4 2 chr9 24606592 24607590 -117663854 - L1PA4 LINE L1 -247 5908 4889 9454 54 0 0 chr9 24607591 24608796 -117662648 + L1P LINE L1 1189 2393 -3753 572 296 52 26 chr9 24608811 24609171 -117662273 + L1ME2 LINE L1 959 1241 -4878 200 350 137 8 chr9 24610391 24610508 -117660936 + L2 LINE L2 2946 3077 -195 21 57 0 0 chr9 24611003 24611038 -117660406 + AT_rich Low_complexity Low_complexity 1 35 0 494 276 77 46 chr9 24612000 24612261 -117659183 - L1MC4 LINE L1 -478 7564 7296 274 321 80 48 chr9 24612314 24612501 -117658943 - L2 LINE L2 -663 2651 2459 3015 113 13 2 chr9 24612923 24613390 -117658054 - L1PA13 LINE L1 -3 6160 5689 254 353 41 8 chr9 24614031 24614153 -117657291 - MIR SINE MIR -65 197 72 25 0 0 0 chr9 24615223 24615248 -117656196 + AT_rich Low_complexity Low_complexity 1 25 0 32568 29 6 5 chr9 24615248 24620057 -117651387 - L1PA3 LINE L1 -3 6152 1338 21 82 0 0 chr9 24622526 24622575 -117648869 + AT_rich Low_complexity Low_complexity 1 49 0 359 345 22 84 chr9 24622815 24623174 -117648270 - MLT1I LTR MaLR -1 408 72 2159 263 157 31 chr9 24623361 24623544 -117647900 + L1ME2 LINE L1 3767 3926 -2203 6412 58 2 11 chr9 24623544 24624389 -117647055 + L1PA7 LINE L1 5303 6140 -14 2159 263 157 31 chr9 24624389 24625529 -117645915 + L1ME2 LINE L1 3926 5257 -872 2745 23 0 0 chr9 24625582 24625892 -117645552 + AluY SINE Alu 1 310 -1 850 300 15 10 chr9 24625899 24626253 -117645191 + L1ME2 LINE L1 5336 5693 -454 649 220 17 0 chr9 24626313 24626557 -117644887 + L1ME2 LINE L1 5835 6138 -9 216 0 0 0 chr9 24626992 24627016 -117644428 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 226 48 0 48 chr9 24627205 24627247 -117644197 + (TA)n Simple_repeat Simple_repeat 2 41 0 2220 116 0 3 chr9 24629665 24629975 -117641469 + AluSc SINE Alu 1 309 0 22 0 0 0 chr9 24630426 24630448 -117640996 + AT_rich Low_complexity Low_complexity 1 22 0 216 273 71 40 chr9 24631088 24631187 -117640257 + MIR SINE MIR 66 167 -95 28 29 0 0 chr9 24631207 24631242 -117640202 + AT_rich Low_complexity Low_complexity 1 35 0 182 222 89 0 chr9 24631272 24631317 -117640127 - L2 LINE L2 -86 3227 3179 274 361 82 19 chr9 24632229 24632387 -117639057 - MIR SINE MIR -13 249 82 24 32 0 0 chr9 24632714 24632745 -117638699 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 24633867 24633891 -117637553 + (A)n Simple_repeat Simple_repeat 1 24 0 252 279 68 94 chr9 24634327 24634592 -117636852 + HAL1b LINE L1 269 526 -822 231 36 0 0 chr9 24634625 24634653 -117636791 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 211 39 19 chr9 24634998 24635050 -117636394 + L2 LINE L2 3261 3313 0 201 213 0 0 chr9 24636154 24636201 -117635243 + GA-rich Low_complexity Low_complexity 4 50 0 306 351 11 0 chr9 24637259 24637433 -117634011 - L1MC4 LINE L1 -158 7884 7709 340 346 110 24 chr9 24637470 24637880 -117633564 - L1M4 LINE L1 -2365 4017 3573 452 252 87 8 chr9 24638072 24638199 -117633245 + L2 LINE L2 2400 2536 -778 753 224 100 61 chr9 24638319 24638976 -117632468 - L1M4 LINE L1 -3779 2603 1936 1550 206 14 14 chr9 24639054 24639409 -117632035 + L1MA9 LINE L1 4568 4922 -1224 * 14872 46 1 2 chr9 24639405 24641267 -117630177 - L1PA5 LINE L1 -1419 4727 2868 7381 40 0 0 chr9 24641267 24642697 -117628747 + L1PA5 LINE L1 4724 6153 -1 289 261 33 0 chr9 24642709 24642801 -117628643 + L1MA9 LINE L1 4909 5003 -1143 * 1180 29 0 0 chr9 24642797 24642937 -117628507 - L1P2 LINE L1 -692 5462 5323 5957 162 13 13 chr9 24642959 24643083 -117628361 + L1MA9 LINE L1 5032 5154 -1158 2096 142 0 0 chr9 24643083 24643386 -117628058 - AluSx SINE Alu -9 303 1 5957 162 13 13 chr9 24643386 24644522 -117626922 + L1MA9 LINE L1 5154 6292 -20 4688 32 2 7 chr9 24644921 24645491 -117625953 + L1PA4 LINE L1 5583 6149 -6 28 61 0 0 chr9 24645493 24645542 -117625902 + AT_rich Low_complexity Low_complexity 1 49 0 2222 278 67 15 chr9 24645764 24647445 -117623999 - L1ME3 LINE L1 -207 6373 4604 247 24 24 24 chr9 24647561 24647602 -117623842 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 267 262 0 0 chr9 24648049 24648132 -117623312 - L1ME3 LINE L1 -4628 1970 1873 2447 173 138 115 chr9 24648193 24648794 -117622650 - L1MC3 LINE L1 0 7785 7199 242 299 13 13 chr9 24648794 24648871 -117622573 - MLT1F1 LTR MaLR -456 111 35 2447 173 138 115 chr9 24648871 24649299 -117622145 - L1MC3 LINE L1 -586 7199 4640 2880 261 51 44 chr9 24649303 24650397 -117621047 - L1ME3 LINE L1 -4932 1113 12 332 315 97 35 chr9 24650450 24651688 -117619756 - L1MDa LINE L1 -4831 1384 56 695 244 109 58 chr9 24651751 24652182 -117619262 - HAL1b LINE L1 -278 1070 618 327 311 88 40 chr9 24652358 24652586 -117618858 - HAL1b LINE L1 -1037 311 73 180 324 73 0 chr9 24653452 24653520 -117617924 + MIR SINE MIR 29 101 -161 586 94 12 0 chr9 24654903 24655069 -117616375 - AluSg/x SINE Alu 0 364 198 38 75 0 0 chr9 24655716 24655796 -117615648 + AT_rich Low_complexity Low_complexity 1 80 0 23 33 0 0 chr9 24655873 24655903 -117615541 + AT_rich Low_complexity Low_complexity 1 30 0 191 366 73 24 chr9 24656491 24656614 -117614830 - L2 LINE L2 0 3313 3185 551 260 40 28 chr9 24656634 24656811 -117614633 - L2 LINE L2 0 3313 3135 482 234 11 0 chr9 24656879 24656973 -117614471 + MLT1H LTR MaLR 118 212 -337 1550 193 13 6 chr9 24656974 24657290 -117614154 + L1MA3 LINE L1 5988 6305 0 5145 162 39 3 chr9 24657601 24659007 -117612437 + L1MC1 LINE L1 4671 6113 -220 22 0 0 0 chr9 24659032 24659054 -117612390 + AT_rich Low_complexity Low_complexity 1 22 0 1147 160 0 89 chr9 24659236 24659279 -117612165 + MER46A DNA MER2_type 21 66 -2665 11571 189 32 8 chr9 24659279 24662648 -117608796 - L1PA13 LINE L1 -3 6160 2719 1147 160 0 89 chr9 24662648 24662841 -117608603 + MER46A DNA MER2_type 66 236 0 213 360 117 28 chr9 24662860 24663074 -117608370 - L2 LINE L2 -499 2815 2583 361 367 116 14 chr9 24663148 24663363 -117608081 + L2 LINE L2 2857 3093 -220 245 316 0 13 chr9 24663489 24663565 -117607879 + MLT1I LTR MaLR 86 160 -249 227 250 45 98 chr9 24665277 24665409 -117606035 + MLT1I LTR MaLR 274 398 -11 335 268 88 67 chr9 24665474 24665668 -117605776 + L2 LINE L2 3116 3313 0 741 223 55 45 chr9 24665754 24666045 -117605399 + L1MD2 LINE L1 4730 5023 -1123 * 13993 101 22 30 chr9 24666043 24668274 -117603170 - L1P LINE L1 -1845 4301 2089 6575 64 15 7 chr9 24668280 24669969 -117601475 + L1PA7 LINE L1 4447 6151 -3 3935 196 62 63 chr9 24669969 24670160 -117601284 + L1MD2 LINE L1 5009 5199 -1160 2146 73 3 23 chr9 24670160 24670463 -117600981 + AluY SINE Alu 1 297 -14 3935 196 62 63 chr9 24670463 24670936 -117600508 + L1MD2 LINE L1 5199 5671 -688 1931 151 0 3 chr9 24670936 24671240 -117600204 + AluSg SINE Alu 1 303 -7 3935 196 62 63 chr9 24671240 24671936 -117599508 + L1MD2 LINE L1 5671 6357 -2 549 205 0 82 chr9 24671921 24672092 -117599352 + L1ME LINE L1 5582 5738 -428 * 469 301 23 123 chr9 24672135 24672477 -117598967 - L2 LINE L2 -338 2976 2669 187 222 254 63 chr9 24673762 24673888 -117597556 - L2 LINE L2 0 3272 3123 581 322 86 17 chr9 24674002 24674294 -117597150 - L2 LINE L2 0 3313 3002 1134 197 86 8 chr9 24674294 24674528 -117596916 - MLT1D LTR MaLR 0 505 254 591 207 0 37 chr9 24674591 24674726 -117596718 - MLT1D LTR MaLR -375 130 1 234 268 14 14 chr9 24674928 24674999 -117596445 + CT-rich Low_complexity Low_complexity 2 72 0 358 329 121 26 chr9 24675768 24676224 -117595220 + L1MC4a LINE L1 6091 6589 -1219 1844 178 0 6 chr9 24676656 24676970 -117594474 - AluJb SINE Alu 0 312 1 205 273 0 0 chr9 24677490 24677545 -117593899 + (TATATG)n Simple_repeat Simple_repeat 1 55 0 195 345 53 35 chr9 24677558 24677671 -117593773 + MIR3 SINE MIR 2 116 -92 419 327 65 12 chr9 24677869 24678037 -117593407 - MIR SINE MIR -84 178 2 384 317 179 0 chr9 24678378 24678523 -117592921 - MER5A DNA MER1_type -1 188 18 22 0 0 0 chr9 24679245 24679267 -117592177 + AT_rich Low_complexity Low_complexity 1 22 0 2858 232 91 38 chr9 24679814 24681046 -117590398 + L1MDb LINE L1 785 2046 -4360 3049 274 30 60 chr9 24681078 24683001 -117588443 + L1M3a LINE L1 4 1864 -4171 1348 205 87 9 chr9 24683122 24683444 -117588000 + MLT1A1 LTR MaLR 19 365 0 671 195 36 61 chr9 24683468 24683682 -117587762 - MSTD LTR MaLR -2 394 164 247 241 36 24 chr9 24683744 24683827 -117587617 - MSTD LTR MaLR -267 107 24 2452 252 82 25 chr9 24683866 24684752 -117586692 - MSTD-int LTR MaLR -2 1733 712 * 5106 216 40 17 chr9 24684738 24685109 -117586335 + L1M3a LINE L1 1969 2330 -3704 366 115 0 0 chr9 24685109 24685170 -117586274 + (CA)n Simple_repeat Simple_repeat 2 62 0 5106 216 40 17 chr9 24685170 24686284 -117585160 + L1M3a LINE L1 2330 3489 -2545 398 345 126 5 chr9 24686596 24686819 -117584625 + MIR SINE MIR 3 252 -10 29 0 0 0 chr9 24686959 24686988 -117584456 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 24687091 24687112 -117584332 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 24687343 24687364 -117584080 + AT_rich Low_complexity Low_complexity 1 21 0 188 279 186 12 chr9 24687578 24687664 -117583780 + MIR SINE MIR 74 174 -88 324 188 0 0 chr9 24688724 24688788 -117582656 + (TA)n Simple_repeat Simple_repeat 1 64 0 271 349 64 0 chr9 24689015 24689124 -117582320 + MIR3 SINE MIR 82 197 -11 317 252 27 9 chr9 24689748 24689859 -117581585 + MLT1H LTR MaLR 18 130 -419 185 283 53 26 chr9 24690360 24690473 -117580971 + L2 LINE L2 2624 2739 -575 240 380 58 44 chr9 24690741 24690967 -117580477 + L2 LINE L2 2827 3055 -217 1807 154 27 0 chr9 24691807 24692105 -117579339 - AluSx SINE Alu -6 306 1 198 103 0 0 chr9 24692488 24692517 -117578927 + (TG)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chr9 24692537 24692562 -117578882 + (CA)n Simple_repeat Simple_repeat 2 26 0 1903 143 3 10 chr9 24692564 24692864 -117578580 - AluSx SINE Alu -14 298 1 482 190 129 37 chr9 24693004 24693167 -117578277 - MER5B DNA MER1_type 0 178 1 2720 16 0 0 chr9 24693431 24693734 -117577710 + AluY SINE Alu 1 303 -8 310 95 0 0 chr9 24694617 24694659 -117576785 + MADE1 DNA Mariner 39 80 0 267 349 24 30 chr9 24694904 24695070 -117576374 + L2 LINE L2 3119 3283 -30 1045 177 39 155 chr9 24695558 24695971 -117575473 + MLT1A1 LTR MaLR 1 365 0 6775 226 78 28 chr9 24696071 24697712 -117573732 + MLT1A1-int LTR MaLR 13 1735 0 224 291 17 17 chr9 24699104 24699170 -117572274 - MER5A DNA MER1_type -1 188 112 349 197 103 43 chr9 24699398 24699515 -117571929 - L1ME3A LINE L1 -58 6112 5989 1445 171 8 4 chr9 24699640 24699904 -117571540 - L1MD3 LINE L1 -1 7994 7730 1739 212 3 3 chr9 24750039 24750360 -117521084 - MLT1A1 LTR MaLR -37 328 8 9720 46 2 1 chr9 24750581 24751789 -117519655 - L1PA5 LINE L1 -1500 4646 3438 7215 47 0 0 chr9 24751791 24753273 -117518171 + L1PA5 LINE L1 4656 6145 -9 180 0 0 0 chr9 24753273 24753293 -117518151 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 192 352 0 34 chr9 24753399 24753487 -117517957 + MIR3 SINE MIR 103 187 -21 2253 113 0 0 chr9 24753616 24753926 -117517518 + AluSg SINE Alu 1 310 0 971 291 58 3 chr9 24754200 24754527 -117516917 - MER113 DNA MER1_type? -173 348 4 591 308 56 19 chr9 24755105 24755371 -117516073 + L2 LINE L2 2003 2278 -1036 651 273 0 6 chr9 24755378 24755554 -117515890 + HERVL-B3 LTR ERVL 2 176 -5478 2085 227 68 4 chr9 24755557 24756015 -117515429 - ERVL LTR ERVL -2331 3433 2947 289 179 0 18 chr9 24756040 24756096 -117515348 - ERVL LTR ERVL -5514 250 196 * 2105 173 6 0 chr9 24756095 24756454 -117514990 - ERVL LTR ERVL -1965 3799 3439 5024 185 27 5 chr9 24756454 24757350 -117514094 + HERVL-B3 LTR ERVL 3799 4714 -1050 2183 185 36 6 chr9 24757337 24757900 -117513544 + HERVL-B3 LTR ERVL 5123 5757 -7 * 2590 193 5 77 chr9 24757900 24758497 -117512947 + MLT2B3 LTR ERVL 1 554 0 458 264 163 4 chr9 24758497 24758724 -117512720 + L2 LINE L2 2283 2545 -769 274 222 19 0 chr9 24759392 24759446 -117511998 + ERVL LTR ERVL 4588 4642 -1122 1061 232 50 21 chr9 24759612 24760048 -117511396 - MLT1D LTR MaLR -7 498 5 27 29 0 0 chr9 24760427 24760461 -117510983 + AT_rich Low_complexity Low_complexity 1 34 0 340 287 50 10 chr9 24760552 24760653 -117510791 - L2 LINE L2 -1 3312 3208 227 366 13 33 chr9 24760781 24760934 -117510510 - L2 LINE L2 -189 3083 2934 769 255 33 28 chr9 24760941 24761153 -117510291 + MER20 DNA MER1_type 7 219 0 33 80 0 0 chr9 24761622 24761697 -117509747 + AT_rich Low_complexity Low_complexity 1 75 0 219 330 21 10 chr9 24763968 24764065 -117507379 + MIR3 SINE MIR 104 201 -7 442 250 219 21 chr9 24764077 24764269 -117507175 + MER69 DNA AcHobo 2 231 -2295 329 167 149 16 chr9 24764277 24764371 -117507073 + MER69 DNA AcHobo 2435 2525 -1 21 0 0 0 chr9 24764963 24764984 -117506460 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 24765349 24765373 -117506071 + AT_rich Low_complexity Low_complexity 1 24 0 268 290 254 26 chr9 24765959 24766490 -117504954 + L2 LINE L2 2109 2760 -554 290 278 56 22 chr9 24766544 24766634 -117504810 + L2 LINE L2 3192 3284 -29 300 211 13 26 chr9 24767168 24767244 -117504200 - MER112 DNA MER1_type -183 77 3 22 0 0 0 chr9 24767341 24767363 -117504081 + AT_rich Low_complexity Low_complexity 1 22 0 1452 213 46 20 chr9 24767432 24767780 -117503664 + MLT1D LTR MaLR 1 357 -148 21 36 0 0 chr9 24769317 24769345 -117502099 + AT_rich Low_complexity Low_complexity 1 28 0 207 301 81 44 chr9 24769370 24769506 -117501938 + MIR3 SINE MIR 30 170 -38 209 374 65 0 chr9 24769536 24769643 -117501801 + MIR SINE MIR 26 139 -123 319 253 22 22 chr9 24769802 24769893 -117501551 - MIR SINE MIR -20 242 152 4246 142 47 5 chr9 24769903 24770655 -117500789 - L1PB4 LINE L1 -3 6153 5371 419 283 19 19 chr9 24770680 24770786 -117500658 - MIR SINE MIR -155 107 2 1479 214 14 0 chr9 24771412 24771706 -117499738 - AluJo SINE Alu -12 300 3 234 227 15 15 chr9 24772971 24773037 -117498407 + MER116 DNA Mariner 2 67 -13 538 200 15 156 chr9 24775077 24775282 -117496162 - MER45A DNA AcHobo 0 178 3 969 308 13 60 chr9 24775358 24775806 -117495638 - LTR16B LTR ERVL -2 462 36 298 266 128 11 chr9 24776341 24776435 -117495009 - L2 LINE L2 0 3272 3168 407 343 14 14 chr9 24776440 24776583 -117494861 - MER5A DNA MER1_type 0 189 47 1664 237 41 50 chr9 24776684 24777278 -117494166 + MLT1D LTR MaLR 1 626 0 2511 175 69 41 chr9 24777507 24778074 -117493370 - LTR49 LTR ERV1 -10 585 3 255 31 0 0 chr9 24778575 24778607 -117492837 + (TG)n Simple_repeat Simple_repeat 2 33 0 4058 156 17 10 chr9 24778745 24779442 -117492002 + MER50 LTR ERV1 1 702 -32 1606 197 109 93 chr9 24779452 24780011 -117491433 - LTR36 LTR ERV1 -43 568 1 827 166 198 28 chr9 24780121 24780154 -117491290 + MER39B LTR ERV1 3 29 -624 180 0 0 0 chr9 24780154 24780174 -117491270 + (CAG)n Simple_repeat Simple_repeat 3 22 0 827 166 198 28 chr9 24780174 24780357 -117491087 + MER39B LTR ERV1 29 256 -397 952 205 31 26 chr9 24780357 24780586 -117490858 + AluJo SINE Alu 72 301 -11 1367 145 5 5 chr9 24780586 24780797 -117490647 + MER39B LTR ERV1 247 457 -196 261 54 0 27 chr9 24780797 24780834 -117490610 - THE1B LTR MaLR 0 364 329 27 29 0 0 chr9 24781098 24781132 -117490312 + AT_rich Low_complexity Low_complexity 1 34 0 181 146 42 0 chr9 24781135 24781183 -117490261 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 24 0 0 0 chr9 24781670 24781694 -117489750 + AT_rich Low_complexity Low_complexity 1 24 0 2051 230 132 30 chr9 24781903 24782995 -117488449 + L1ME1 LINE L1 4948 6161 -5 33 56 0 0 chr9 24783877 24783931 -117487513 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr9 24783946 24783969 -117487475 + AT_rich Low_complexity Low_complexity 1 23 0 1544 161 39 25 chr9 24784797 24785082 -117486362 - MER89 LTR ERV1 -3 556 268 525 298 28 34 chr9 24785073 24785251 -117486193 - LTR33A LTR ERVL -340 183 7 * 1087 156 0 0 chr9 24785827 24786006 -117485438 + L1PA13 LINE L1 5982 6160 -3 603 148 19 28 chr9 24786056 24786164 -117485280 + FLAM_C SINE Alu 24 130 -13 729 233 79 0 chr9 24786726 24786916 -117484528 - MIR SINE MIR -57 205 2 4473 147 41 31 chr9 24787857 24788642 -117482802 + MER54B LTR ERVL 1 793 0 207 0 0 0 chr9 24789150 24789173 -117482271 + (TG)n Simple_repeat Simple_repeat 2 24 0 200 83 28 0 chr9 24789173 24789204 -117482240 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr9 24789886 24789907 -117481537 + (T)n Simple_repeat Simple_repeat 1 21 0 2498 109 19 0 chr9 24790331 24790699 -117480745 + THE1C LTR MaLR 1 375 0 196 330 104 0 chr9 24791463 24791569 -117479875 - MIR SINE MIR 0 262 146 265 293 66 69 chr9 24792090 24792415 -117479029 - L1MEc LINE L1 -832 1658 1333 2345 95 0 0 chr9 24792415 24792721 -117478723 - AluY SINE Alu -5 306 1 265 293 66 69 chr9 24792721 24792757 -117478687 - L1MEc LINE L1 -1157 1333 1298 497 275 45 95 chr9 24792761 24792847 -117478597 - L1MEc LINE L1 -4917 1202 1113 925 239 9 18 chr9 24792847 24793073 -117478371 - MER58A DNA MER1_type 0 224 1 497 275 45 95 chr9 24793073 24793364 -117478080 - L1MEc LINE L1 -5006 1113 844 195 69 0 0 chr9 24793521 24793550 -117477894 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1082 122 0 0 chr9 24794491 24794638 -117476806 - AluSx SINE Alu -39 273 127 1053 98 0 0 chr9 24794675 24794808 -117476636 - AluSx SINE Alu -180 133 1 366 329 29 29 chr9 24794903 24795040 -117476404 - MIR3 SINE MIR -24 184 48 288 0 0 0 chr9 24795829 24795861 -117475583 + (TG)n Simple_repeat Simple_repeat 2 33 0 186 43 0 0 chr9 24795860 24795883 -117475561 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 * 477 231 0 66 chr9 24795907 24796028 -117475416 - FLAM_C SINE Alu -26 117 5 757 299 57 68 chr9 24796031 24796416 -117475028 - L2 LINE L2 -42 3271 2891 214 322 11 58 chr9 24796448 24796535 -117474909 - L2 LINE L2 -1 3271 3189 191 36 36 0 chr9 24796589 24796617 -117474827 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 303 298 46 20 chr9 24797250 24797401 -117474043 + L1ME4a LINE L1 5767 5921 -200 22 0 0 0 chr9 24797402 24797424 -117474020 + AT_rich Low_complexity Low_complexity 1 22 0 35 24 0 0 chr9 24797520 24797562 -117473882 + AT_rich Low_complexity Low_complexity 1 42 0 778 153 0 29 chr9 24797565 24797702 -117473742 + AluJb SINE Alu 171 303 -9 230 171 24 0 chr9 24798206 24798247 -117473197 + MER5A DNA MER1_type 7 48 -141 208 323 0 15 chr9 24798674 24798739 -117472705 - L2 LINE L2 -821 2493 2430 4135 72 24 0 chr9 24799133 24799674 -117471770 - MER41A LTR ERV1 0 554 1 1348 203 50 56 chr9 24800056 24800466 -117470978 - MER67C LTR ERV1 -241 273 1 3110 136 99 74 chr9 24800702 24801335 -117470109 + LTR8 LTR ERV1 1 649 -42 732 213 13 13 chr9 24801340 24801490 -117469954 - AluJo SINE Alu -157 155 6 335 260 62 5 chr9 24801766 24801958 -117469486 - L1MD2 LINE L1 -414 5945 5847 293 172 0 31 chr9 24802020 24802084 -117469360 - L1MC4 LINE L1 0 8042 7981 4232 223 96 24 chr9 24802085 24802297 -117469147 - L1MC4 LINE L1 -149 7893 7698 633 243 52 23 chr9 24802297 24802470 -117468974 - MER45A DNA AcHobo 0 178 1 4232 223 96 24 chr9 24802470 24803597 -117467847 - L1MC4 LINE L1 -344 7698 6457 21 36 0 0 chr9 24804448 24804476 -117466968 + AT_rich Low_complexity Low_complexity 1 28 0 1593 222 31 53 chr9 24804561 24804629 -117466815 + MLT1D LTR MaLR 7 75 -430 2839 149 52 47 chr9 24804629 24805221 -117466223 - LTR49 LTR ERV1 0 595 1 1593 222 31 53 chr9 24805221 24805603 -117465841 + MLT1D LTR MaLR 75 447 -58 24 85 0 0 chr9 24805806 24805853 -117465591 + AT_rich Low_complexity Low_complexity 1 47 0 443 283 74 30 chr9 24805933 24806170 -117465274 - L1ME4a LINE L1 -193 5928 5676 2114 130 0 25 chr9 24806170 24806486 -117464958 - AluSq SINE Alu -5 308 1 443 283 74 30 chr9 24806486 24806517 -117464927 - L1ME4a LINE L1 -445 5676 5648 482 212 0 10 chr9 24806519 24806618 -117464826 + MER49 LTR ERV1 1 98 -825 * 1397 129 27 65 chr9 24806614 24806877 -117464567 + MER4D LTR ERV1 324 576 -327 3104 97 14 0 chr9 24806878 24807313 -117464131 - L1PA10 LINE L1 0 6168 5728 2593 101 0 0 chr9 24807313 24807668 -117463776 - THE1A LTR MaLR 0 355 1 11574 96 6 5 chr9 24807668 24809237 -117462207 - THE1A-int LTR MaLR 0 1580 9 723 295 9 9 chr9 24809237 24809454 -117461990 - L1P3 LINE L1 -5648 227 11 1786 170 29 14 chr9 24809459 24809806 -117461638 + MER4D LTR ERV1 545 896 -7 32 26 0 0 chr9 24810008 24810047 -117461397 + AT_rich Low_complexity Low_complexity 1 39 0 368 387 106 24 chr9 24810708 24811039 -117460405 - L2 LINE L2 -2 3270 2913 22 0 0 0 chr9 24812858 24812880 -117458564 + AT_rich Low_complexity Low_complexity 1 22 0 449 309 62 33 chr9 24813513 24813723 -117457721 + MLT1I LTR MaLR 194 409 0 717 208 0 0 chr9 24813928 24814053 -117457391 + FLAM_C SINE Alu 1 125 -18 24 67 0 0 chr9 24814053 24814098 -117457346 + AT_rich Low_complexity Low_complexity 1 45 0 332 268 275 0 chr9 24814099 24814237 -117457207 - MIR SINE MIR -13 249 74 21 36 0 0 chr9 24815125 24815153 -117456291 + AT_rich Low_complexity Low_complexity 1 28 0 1911 133 7 0 chr9 24815355 24815626 -117455818 + AluSg SINE Alu 21 293 -17 2284 173 24 21 chr9 24816205 24816674 -117454770 + L1MA10 LINE L1 5863 6332 -2 6486 30 1 0 chr9 24816818 24817582 -117453862 - L1PA3 LINE L1 0 6155 5391 5853 30 0 42 chr9 24817576 24818342 -117453102 + L1PA3 LINE L1 4667 5400 -746 * 1350 203 51 0 chr9 24818707 24818989 -117452455 + AluJb SINE Alu 14 308 0 263 177 16 0 chr9 24818995 24819057 -117452387 + (TA)n Simple_repeat Simple_repeat 2 64 0 469 111 15 70 chr9 24819121 24819398 -117452046 + (CATATA)n Simple_repeat Simple_repeat 1 261 0 449 318 20 7 chr9 24819419 24819567 -117451877 + MIR SINE MIR 63 212 -50 1167 209 72 26 chr9 24819567 24819969 -117451475 + L1M4 LINE L1 2735 3159 -2987 1345 212 17 17 chr9 24819973 24820265 -117451179 + AluJo SINE Alu 1 292 -20 28 29 0 0 chr9 24820265 24820300 -117451144 + AT_rich Low_complexity Low_complexity 1 35 0 375 197 120 0 chr9 24820328 24820445 -117450999 + MER106B DNA MER1_type 903 1033 -26 3618 245 53 45 chr9 24820470 24821578 -117449866 + L1M4 LINE L1 3318 4416 -1730 2100 131 3 0 chr9 24821578 24821869 -117449575 + AluSx SINE Alu 2 293 -19 3618 245 53 45 chr9 24821869 24822182 -117449262 + L1M4 LINE L1 4416 4754 -1392 1357 233 45 22 chr9 24822182 24822539 -117448905 - MLT1A1 LTR MaLR 0 365 1 3618 245 53 45 chr9 24822539 24822658 -117448786 + L1M4 LINE L1 4754 4871 -1275 2345 244 38 65 chr9 24822662 24823446 -117447998 - L1M4 LINE L1 -5733 809 47 5623 150 8 32 chr9 24823451 24823830 -117447614 - L1PA15 LINE L1 -3 6162 5776 234 91 0 0 chr9 24823830 24823863 -117447581 + (CA)n Simple_repeat Simple_repeat 2 34 0 5623 150 8 32 chr9 24823863 24824339 -117447105 - L1PA15 LINE L1 -389 5776 5290 2389 58 3 61 chr9 24824339 24824669 -117446775 - AluY SINE Alu 0 311 1 5623 150 8 32 chr9 24824669 24825215 -117446229 - L1PA15 LINE L1 -875 5290 4783 1585 228 15 25 chr9 24826150 24826550 -117444894 + MSTD LTR MaLR 1 396 0 2263 110 0 7 chr9 24827300 24827609 -117443835 - AluSx SINE Alu -3 309 3 295 294 109 25 chr9 24828037 24828156 -117443288 + MIR SINE MIR 9 137 -125 275 307 18 18 chr9 24828162 24828276 -117443168 + MIR SINE MIR 78 191 -71 7200 40 1 1 chr9 24828276 24829284 -117442160 + L1PA5 LINE L1 5121 6128 -26 21 36 0 0 chr9 24830169 24830197 -117441247 + AT_rich Low_complexity Low_complexity 1 28 0 2070 171 49 3 chr9 24830904 24831289 -117440155 - MER57A LTR ERV1 0 403 1 1254 184 35 27 chr9 24831289 24831545 -117439899 - MER57A-int LTR ERV1 0 7537 7280 629 154 41 8 chr9 24831547 24831670 -117439774 - LTR54B LTR ERV1 -369 129 3 6602 185 29 29 chr9 24831670 24832992 -117438452 - MER57A-int LTR ERV1 -391 7146 5825 1305 143 4 13 chr9 24833320 24833550 -117437894 - MER57A-int LTR ERV1 -1716 5821 5594 328 192 19 0 chr9 24833550 24833654 -117437790 + (TA)n Simple_repeat Simple_repeat 2 107 0 4847 191 41 37 chr9 24833654 24835009 -117436435 - MER57A-int LTR ERV1 -1586 4745 3710 933 190 41 5 chr9 24835172 24835367 -117436077 + MER57-int LTR ERV1 4886 5087 -2450 278 206 29 0 chr9 24835461 24835529 -117435915 - MER41-int LTR ERV1 -3772 1164 1095 * 424 252 71 15 chr9 24835499 24835721 -117435723 - MER41-int LTR ERV1 -3591 1982 1096 399 216 0 0 chr9 24835846 24835920 -117435524 - MER34C LTR ERV1 -355 230 157 253 237 0 17 chr9 24835991 24836050 -117435394 - MER41-int LTR ERV1 -3222 2724 2667 3943 189 42 38 chr9 24836153 24836991 -117434453 - MER41-int LTR ERV1 -6694 843 3 283 279 29 10 chr9 24837717 24837821 -117433623 - L1MD3 LINE L1 -11 7984 7879 257 315 56 22 chr9 24839050 24839139 -117432305 - L2 LINE L2 0 3272 3181 25 51 0 0 chr9 24840452 24840491 -117430953 + AT_rich Low_complexity Low_complexity 1 39 0 1917 155 11 11 chr9 24840942 24841296 -117430148 + L1MA4 LINE L1 5937 6290 -10 208 363 113 19 chr9 24841712 24841872 -117429572 - L2 LINE L2 0 3272 3098 250 233 17 17 chr9 24842613 24842673 -117428771 - MIR SINE MIR -119 143 84 709 290 97 34 chr9 24842852 24843359 -117428085 - L1M4 LINE L1 -2261 3885 3347 1801 116 0 4 chr9 24843594 24843865 -117427579 - AluY SINE Alu 0 304 35 1035 76 8 0 chr9 24843878 24844009 -117427435 - AluSq/x SINE Alu -178 134 3 329 360 23 6 chr9 24844014 24844189 -117427255 - L1M4 LINE L1 -1481 4665 4488 227 170 80 0 chr9 24844364 24844476 -117426968 + (TA)n Simple_repeat Simple_repeat 1 121 0 876 226 39 42 chr9 24844486 24844792 -117426652 + L1MC4a LINE L1 6165 6469 -1339 948 173 6 34 chr9 24844825 24845004 -117426440 - FRAM SINE Alu -5 171 1 3574 256 62 17 chr9 24845004 24846276 -117425168 + L1MC4a LINE L1 6479 7807 -1 501 204 7 36 chr9 24846295 24846432 -117425012 + L1MD2 LINE L1 6215 6347 -12 1166 157 33 121 chr9 24846451 24846573 -117424871 + AluYb8 SINE Alu 16 147 -171 2216 77 3 13 chr9 24846573 24846872 -117424572 + AluY SINE Alu 1 296 -15 1166 157 33 121 chr9 24846872 24847081 -117424363 + AluYb8 SINE Alu 147 318 0 383 303 50 9 chr9 24847085 24847306 -117424138 + L1MEc LINE L1 1445 1674 -4722 3061 270 68 8 chr9 24847609 24848480 -117422964 - ERVL LTR ERVL -795 4969 4047 2164 121 0 9 chr9 24849243 24849558 -117421886 + AluSx SINE Alu 1 312 0 303 291 7 101 chr9 24850684 24850832 -117420612 - L2 LINE L2 -185 3087 2954 196 296 56 46 chr9 24851132 24851240 -117420204 - L2 LINE L2 -756 2558 2450 24 53 0 0 chr9 24852321 24852359 -117419085 + AT_rich Low_complexity Low_complexity 1 38 0 841 155 0 0 chr9 24852359 24852488 -117418956 + FRAM SINE Alu 34 162 -14 460 343 47 0 chr9 24852489 24852661 -117418783 - MIR SINE MIR -82 180 1 300 331 78 37 chr9 24852998 24853240 -117418204 + L2 LINE L2 2810 3061 -211 1556 198 44 32 chr9 24854481 24854824 -117416620 - MER7A DNA MER2_type -1 345 1 184 280 0 20 chr9 24855189 24855239 -117416205 + MIR3 SINE MIR 108 156 -52 243 149 40 0 chr9 24855274 24855348 -117416096 + (TA)n Simple_repeat Simple_repeat 2 78 0 399 345 15 45 chr9 24855415 24855615 -117415829 + MIR3 SINE MIR 14 207 -1 1297 212 82 137 chr9 24856342 24856890 -117414554 - MLT1E1 LTR MaLR 0 654 137 192 40 0 0 chr9 24857380 24857405 -117414039 + (TG)n Simple_repeat Simple_repeat 2 26 0 355 345 28 26 chr9 24857474 24857666 -117413778 - MIR SINE MIR -49 213 22 181 260 104 13 chr9 24857760 24857837 -117413607 + L2 LINE L2 3139 3222 -50 30 0 0 0 chr9 24858474 24858504 -117412940 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 24858901 24858928 -117412516 + (TA)n Simple_repeat Simple_repeat 1 27 0 225 267 33 0 chr9 24859096 24859156 -117412288 - MIR SINE MIR -119 143 82 26 0 0 0 chr9 24859941 24859967 -117411477 + AT_rich Low_complexity Low_complexity 1 26 0 229 340 71 35 chr9 24860067 24860208 -117411236 - L2 LINE L2 0 3313 3168 208 321 49 0 chr9 24860455 24860536 -117410908 + L2 LINE L2 3229 3313 0 198 293 40 107 chr9 24861562 24861712 -117409732 - L3 LINE CR1 -549 1028 889 272 284 11 23 chr9 24861894 24861982 -117409462 - L2 LINE L2 -6 3307 3221 553 80 0 13 chr9 24862213 24862288 -117409156 - THE1C LTR MaLR -1 374 301 2125 146 8 40 chr9 24862290 24862666 -117408778 - THE1B LTR MaLR 0 364 1 10139 108 26 35 chr9 24862666 24864260 -117407184 - THE1B-int LTR MaLR 0 1580 1 2444 122 8 3 chr9 24864260 24864622 -117406822 - THE1B LTR MaLR 0 364 1 2655 19 7 3 chr9 24865608 24865918 -117405526 + AluY SINE Alu 1 311 0 695 210 41 39 chr9 24866014 24866169 -117405275 - MER45A DNA AcHobo 0 178 27 242 245 0 0 chr9 24866223 24866276 -117405168 + L2 LINE L2 3261 3313 0 1052 290 96 35 chr9 24867165 24867742 -117403702 + MER115 DNA AcHobo 3 543 -3488 290 26 26 0 chr9 24867742 24867781 -117403663 + (TG)n Simple_repeat Simple_repeat 2 41 0 1052 290 96 35 chr9 24867781 24867849 -117403595 + MER115 DNA AcHobo 543 4031 0 22 0 0 0 chr9 24870914 24870936 -117400508 + AT_rich Low_complexity Low_complexity 1 22 0 2201 97 0 3 chr9 24873031 24873321 -117398123 + AluSc SINE Alu 2 290 -19 1862 137 11 0 chr9 24873791 24874062 -117397382 + AluSg SINE Alu 1 274 -36 414 0 0 0 chr9 24874064 24874110 -117397334 + (TA)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chr9 24874109 24874130 -117397314 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 219 219 41 14 chr9 24875126 24875199 -117396245 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 522 286 55 35 chr9 24875334 24875533 -117395911 - MIR SINE MIR -10 252 50 2627 204 19 51 chr9 24875911 24876592 -117394852 - L1MA9 LINE L1 -38 6274 5616 * 4186 199 29 8 chr9 24876590 24877749 -117393695 + L1MA9 LINE L1 4424 5603 -709 24 0 0 0 chr9 24878195 24878219 -117393225 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr9 24878670 24878701 -117392743 + AT_rich Low_complexity Low_complexity 1 31 0 257 319 6 39 chr9 24879557 24879756 -117391688 - L1ME LINE L1 -380 5784 5589 303 200 52 58 chr9 24879849 24880004 -117391440 + MER96B DNA MER1_type? 193 346 -71 25 0 0 0 chr9 24880015 24880040 -117391404 + AT_rich Low_complexity Low_complexity 1 25 0 353 242 160 62 chr9 24880159 24880403 -117391041 - L1ME LINE L1 -343 5821 5554 7667 24 0 0 chr9 24880405 24881529 -117389915 + L1PA4 LINE L1 5016 6155 0 788 300 146 30 chr9 24881588 24882121 -117389323 + MLT1G1 LTR MaLR 1 595 0 1936 156 36 0 chr9 24883384 24883749 -117387695 + L1MA3 LINE L1 5927 6304 -1 8826 212 67 68 chr9 24883762 24889246 -117382198 - L1MC2 LINE L1 -62 6562 1094 246 62 0 0 chr9 24889246 24889278 -117382166 + (TA)n Simple_repeat Simple_repeat 2 33 0 8826 212 67 68 chr9 24889278 24890366 -117381078 - L1MC2 LINE L1 -5530 1094 6 5854 98 23 6 chr9 24890385 24891840 -117379604 - L1PA11 LINE L1 -3 6171 4692 1519 245 25 18 chr9 24891845 24892241 -117379203 - L1MD2 LINE L1 -12 6347 5949 255 61 0 0 chr9 24892366 24892399 -117379045 + (TA)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr9 24892399 24892423 -117379021 + (TG)n Simple_repeat Simple_repeat 2 25 0 1640 151 93 0 chr9 24892522 24892800 -117378644 + AluSx SINE Alu 2 305 -7 2338 90 3 0 chr9 24893299 24893609 -117377835 + AluSp SINE Alu 1 311 -2 2051 118 3 3 chr9 24893624 24893913 -117377531 + AluSg SINE Alu 6 294 -16 269 306 143 0 chr9 24895663 24895761 -117375683 - MIR SINE MIR 0 262 151 372 296 20 0 chr9 24895797 24895895 -117375549 + Charlie1 DNA MER1_type 38 137 -2624 1223 231 84 30 chr9 24895923 24896360 -117375084 + Charlie1 DNA MER1_type 2229 2698 -63 1778 189 0 6 chr9 24896360 24896672 -117374772 - AluJb SINE Alu -2 310 1 1223 231 84 30 chr9 24896672 24896736 -117374708 + Charlie1 DNA MER1_type 2698 2757 -4 2208 81 34 0 chr9 24896765 24896940 -117374504 - AluY SINE Alu -5 306 115 207 0 0 0 chr9 24896940 24896963 -117374481 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2208 81 34 0 chr9 24896963 24897083 -117374361 - AluY SINE Alu -196 115 1 1037 299 149 39 chr9 24897427 24897965 -117373479 + L1MA5 LINE L1 141 737 -6472 3718 255 35 19 chr9 24898102 24899229 -117372215 + L1MA5 LINE L1 1731 2874 -4335 5212 173 31 8 chr9 24899256 24901194 -117370250 + L1MA5 LINE L1 5378 7360 -2 2610 248 67 17 chr9 24901255 24902182 -117369262 + L1ME2 LINE L1 5194 6164 0 301 228 89 41 chr9 24902320 24902443 -117369001 + L1MC5 LINE L1 7784 7912 -49 201 310 70 20 chr9 24902865 24902965 -117368479 - MIR SINE MIR -102 106 1 305 327 0 47 chr9 24904798 24904905 -117366539 - MIR SINE MIR -140 122 21 249 244 44 22 chr9 24904988 24905078 -117366366 + L1MC4 LINE L1 6614 6705 -1337 216 163 0 0 chr9 24905096 24905139 -117366305 + (TA)n Simple_repeat Simple_repeat 2 44 0 228 211 0 0 chr9 24905186 24905243 -117366201 + L1MC4 LINE L1 6653 6709 -1333 495 304 77 32 chr9 24905283 24905503 -117365941 + MIR SINE MIR 21 250 -12 406 269 67 0 chr9 24905632 24905736 -117365708 - MIR SINE MIR -42 220 110 213 65 0 0 chr9 24907335 24907366 -117364078 + (TC)n Simple_repeat Simple_repeat 2 32 0 214 205 0 0 chr9 24907881 24907920 -117363524 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1556 206 25 8 chr9 24910562 24910927 -117360517 - L1MB2 LINE L1 -9 6162 5792 3657 100 8 16 chr9 24910929 24911534 -117359910 + L1MB2 LINE L1 5177 5775 -388 9803 152 45 49 chr9 24911534 24912742 -117358702 + L1P3 LINE L1 10 1264 -5197 189 0 0 0 chr9 24912742 24912763 -117358681 + (CAA)n Simple_repeat Simple_repeat 1 21 0 9803 152 45 49 chr9 24912763 24913919 -117357525 + L1P3 LINE L1 1264 2423 -4038 2205 64 4 0 chr9 24913917 24914197 -117357247 + L1PA8A LINE L1 5419 5699 -432 * 947 187 65 32 chr9 24914199 24914445 -117356999 + L1MCa LINE L1 78 331 -6095 1629 166 13 0 chr9 24914465 24914767 -117356677 + L1MCa LINE L1 841 1146 -5280 * 2450 256 60 8 chr9 24914766 24915652 -117355792 + L1MB1 LINE L1 2639 3570 -2576 1589 127 8 93 chr9 24915654 24916031 -117355413 - MER4A LTR ERV1 0 664 261 556 143 10 10 chr9 24916031 24916129 -117355315 - MER4A LTR ERV1 -566 98 1 2061 250 19 30 chr9 24916136 24916761 -117354683 + L1MB1 LINE L1 3576 4193 -1953 1058 208 21 4 chr9 24916764 24917005 -117354439 + L1MC1 LINE L1 6080 6324 -9 1843 237 90 90 chr9 24917023 24917353 -117354091 + L1MB7 LINE L1 3521 3850 -2296 625 238 52 47 chr9 24917353 24917525 -117353919 + FAM SINE Alu 1 173 -2 1843 237 90 90 chr9 24917525 24917657 -117353787 + L1MB7 LINE L1 3850 3981 -2165 1789 175 17 0 chr9 24917657 24917954 -117353490 + AluSx SINE Alu 1 302 -10 1843 237 90 90 chr9 24917954 24918994 -117352450 + L1MB7 LINE L1 3980 5024 -1122 * 4492 191 19 23 chr9 24918992 24920037 -117351407 - L1 LINE L1 -1661 4485 3445 * 4588 200 17 21 chr9 24920030 24920089 -117351355 + L1MB1 LINE L1 4592 4650 -1518 2748 163 15 46 chr9 24920089 24920672 -117350772 + L1MA7 LINE L1 5727 6291 0 4588 200 17 21 chr9 24920672 24922188 -117349256 + L1MB1 LINE L1 4650 6168 0 1594 184 39 29 chr9 24922252 24922788 -117348656 + L1MB7 LINE L1 4989 5534 -650 2086 174 15 10 chr9 24922792 24923195 -117348249 - L1MB1 LINE L1 -208 5981 5577 543 140 9 65 chr9 24923199 24923306 -117348138 + LTR1B LTR ERV1 277 377 -449 2431 212 42 10 chr9 24923311 24923383 -117348061 + L1MB7 LINE L1 5544 5612 -572 4274 157 49 14 chr9 24923383 24924181 -117347263 + LTR1B LTR ERV1 1 826 0 2431 212 42 10 chr9 24924181 24924720 -117346724 + L1MB7 LINE L1 5612 6175 -9 23 86 0 0 chr9 24925022 24925080 -117346364 + AT_rich Low_complexity Low_complexity 1 58 0 340 359 0 0 chr9 24926619 24926722 -117344722 + MER5A DNA MER1_type 4 106 -83 239 347 0 0 chr9 24926771 24926843 -117344601 + (TATG)n Simple_repeat Simple_repeat 4 75 0 304 314 29 54 chr9 24928414 24928656 -117342788 + L1MC4a LINE L1 5727 5962 -1846 2365 139 16 0 chr9 24928743 24929110 -117342334 - THE1C LTR MaLR -2 373 1 9263 130 58 9 chr9 24929110 24930616 -117340828 - THE1C-int LTR MaLR 0 1580 1 1462 164 48 77 chr9 24930616 24931071 -117340373 - THE1C LTR MaLR 0 375 1 906 280 153 4 chr9 24931232 24931761 -117339683 + L1M4 LINE L1 4460 5067 -1079 240 303 15 0 chr9 24931959 24932025 -117339419 + L1ME3A LINE L1 36 102 -6294 845 289 37 54 chr9 24932142 24932550 -117338894 + L1ME3A LINE L1 160 560 -5836 311 190 0 107 chr9 24932610 24932731 -117338713 + L1ME3A LINE L1 2177 2284 -4112 1293 296 133 33 chr9 24932854 24934181 -117337263 + L1ME3A LINE L1 4073 5671 -568 5645 81 5 15 chr9 24934181 24934972 -117336472 + L1PA8 LINE L1 5386 6168 -4 1293 296 133 33 chr9 24934972 24935603 -117335841 + L1ME3A LINE L1 5671 6237 -2 4129 168 44 14 chr9 24935694 24936943 -117334501 + L1MA6 LINE L1 4803 6079 -221 1945 142 3 7 chr9 24937037 24937340 -117334104 + AluSc SINE Alu 1 302 -7 199 391 45 18 chr9 24937675 24937785 -117333659 + L2 LINE L2 3158 3270 -2 23 0 0 0 chr9 24938049 24938072 -117333372 + AT_rich Low_complexity Low_complexity 1 23 0 231 361 113 38 chr9 24938161 24938294 -117333150 + MIR3 SINE MIR 30 172 -36 240 262 71 60 chr9 24938319 24938502 -117332942 - MER112 DNA MER1_type -45 215 31 391 292 55 72 chr9 24939529 24939875 -117331569 + HAL1 LINE L1 1314 1653 -854 320 258 121 40 chr9 24940085 24940209 -117331235 - MLT1J LTR MaLR -3 508 375 23 78 0 0 chr9 24940209 24940260 -117331184 + AT_rich Low_complexity Low_complexity 1 51 0 311 354 29 0 chr9 24940621 24940796 -117330648 - HAL1 LINE L1 -853 1654 1475 2867 0 0 0 chr9 24941228 24941539 -117329905 + AluYa5 SINE Alu 1 311 0 22 80 0 0 chr9 24942313 24942363 -117329081 + AT_rich Low_complexity Low_complexity 1 50 0 1111 133 0 0 chr9 24942527 24942693 -117328751 - AluSg/x SINE Alu -11 301 136 21 0 0 0 chr9 24942831 24942852 -117328592 + AT_rich Low_complexity Low_complexity 1 21 0 2454 58 7 0 chr9 24944039 24944348 -117327096 - AluY SINE Alu 0 311 1 1479 136 4 43 chr9 24944642 24944899 -117326545 - AluSg/x SINE Alu 0 312 66 738 323 74 35 chr9 24944900 24945526 -117325918 + L2 LINE L2 1771 3305 -8 265 282 146 0 chr9 24948064 24948167 -117323277 - L2 LINE L2 -4 3309 3192 2132 106 109 6 chr9 24949675 24950005 -117321439 + THE1B LTR MaLR 1 364 0 233 320 89 24 chr9 24950474 24950822 -117320622 - HAL1 LINE L1 -1314 1193 818 11302 90 20 0 chr9 24950822 24953196 -117318248 + L1PA7 LINE L1 3760 6153 -1 233 320 89 24 chr9 24953196 24953219 -117318225 - HAL1 LINE L1 -1689 818 798 278 255 38 71 chr9 24953249 24953433 -117318011 + L1MC4a LINE L1 4108 4285 -1861 611 281 28 65 chr9 24953623 24954579 -117316865 + L1MC4a LINE L1 4563 5476 -749 691 265 54 38 chr9 24954667 24954984 -117316460 + L1MC4a LINE L1 5612 5933 -1875 2159 231 113 51 chr9 24954996 24955921 -117315523 - LTR28 LTR ERV1 0 1229 1 305 292 68 78 chr9 24955926 24956118 -117315326 + L1MC4a LINE L1 5902 6091 -1717 2037 119 0 3 chr9 24957259 24957579 -117313865 + AluSx SINE Alu 1 319 0 270 348 43 21 chr9 24957706 24957847 -117313597 - MER5A DNA MER1_type -38 151 8 247 274 16 0 chr9 24958497 24958559 -117312885 + L2 LINE L2 3204 3266 -6 32 57 0 0 chr9 24958570 24958623 -117312821 + AT_rich Low_complexity Low_complexity 1 53 0 410 335 91 6 chr9 24958700 24958876 -117312568 + MIR SINE MIR 2 192 -70 325 280 67 13 chr9 24959278 24959428 -117312016 - L1MA10 LINE L1 -8 6326 6169 2084 270 102 38 chr9 24959434 24961495 -117309949 - L1MEc LINE L1 -2796 3419 1288 2511 126 8 3 chr9 24961573 24961946 -117309498 + THE1C LTR MaLR 1 375 0 9465 132 49 8 chr9 24961946 24963463 -117307981 + THE1C-int LTR MaLR 1 1580 0 2268 141 28 0 chr9 24963463 24963825 -117307619 + THE1C LTR MaLR 1 372 -3 526 300 63 42 chr9 24963838 24964362 -117307082 - L1MEc LINE L1 -5370 1026 492 851 208 118 100 chr9 24967091 24967480 -117303964 + MSTD LTR MaLR 1 396 0 256 245 19 9 chr9 24969353 24969460 -117301984 - MIR3 SINE MIR -31 177 69 536 303 82 12 chr9 24970201 24970445 -117300999 + L3 LINE CR1 613 873 -704 464 303 87 40 chr9 24970662 24971032 -117300412 - L1MEc LINE L1 -3650 2776 2390 228 211 0 0 chr9 24971161 24971199 -117300245 + MER2 DNA MER2_type 2 39 -306 42688 48 5 1 chr9 24971224 24977349 -117294095 + L1PA4 LINE L1 3 6153 -2 24 32 0 0 chr9 24977349 24977380 -117294064 + AT_rich Low_complexity Low_complexity 1 31 0 344 138 35 0 chr9 24977383 24977441 -117294003 + MER2 DNA MER2_type 214 273 -72 22 35 0 0 chr9 24977445 24977474 -117293970 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr9 24977482 24977510 -117293934 + (TA)n Simple_repeat Simple_repeat 1 28 0 1981 142 21 0 chr9 24977528 24977817 -117293627 - AluSx SINE Alu -17 295 1 368 219 0 0 chr9 24977820 24977884 -117293560 + MER2 DNA MER2_type 282 345 0 30 59 0 0 chr9 24977891 24977942 -117293502 + AT_rich Low_complexity Low_complexity 1 51 0 362 272 78 0 chr9 24978341 24978444 -117293000 + MIR SINE MIR 62 172 -90 254 311 47 26 chr9 24978591 24978784 -117292660 - L1MEc LINE L1 -4938 1669 1473 623 244 14 81 chr9 24979128 24979337 -117292107 - MIR SINE MIR -11 251 57 2201 114 7 0 chr9 24979339 24979647 -117291797 - AluSx SINE Alu 0 312 3 239 108 0 0 chr9 24979653 24979690 -117291754 + MLT1E3 LTR MaLR 588 624 0 237 297 177 18 chr9 24983040 24983205 -117288239 + MIR SINE MIR 28 220 -42 225 154 0 0 chr9 24983300 24983339 -117288105 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 227 158 61 114 chr9 24984291 24984405 -117287039 - L1ME4a LINE L1 -47 6074 5967 491 212 50 0 chr9 24984713 24984812 -117286632 + MSTB2 LTR MaLR 2 105 -352 1709 114 240 17 chr9 24984866 24985216 -117286228 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr9 24985459 24985481 -117285963 + AT_rich Low_complexity Low_complexity 1 22 0 219 301 53 26 chr9 24987880 24987993 -117283451 - L3b LINE CR1 -114 1469 1354 408 356 29 10 chr9 24988210 24988418 -117283026 - MIR SINE MIR -26 236 25 435 280 53 7 chr9 24988955 24989105 -117282339 - MIR SINE MIR -48 214 58 22 0 0 0 chr9 24989245 24989267 -117282177 + AT_rich Low_complexity Low_complexity 1 22 0 5095 153 61 7 chr9 24991880 24992825 -117278619 - L1MC1 LINE L1 -7 6326 5332 206 345 83 14 chr9 24992849 24992994 -117278450 - L2 LINE L2 -402 2912 2758 937 273 120 11 chr9 24994189 24994954 -117276490 + L1M4 LINE L1 2636 3484 -2662 2333 221 47 94 chr9 24995053 24996010 -117275434 - L1MEc LINE L1 -5496 930 19 21 0 0 0 chr9 24996024 24996045 -117275399 + AT_rich Low_complexity Low_complexity 1 21 0 1857 127 0 4 chr9 24996099 24996366 -117275078 - AluSg SINE Alu -44 266 1 429 274 79 86 chr9 24996378 24997105 -117274339 + L1M4 LINE L1 3633 4354 -1792 4964 32 2 2 chr9 24997105 24997700 -117273744 + L1PA3 LINE L1 5561 6155 0 429 274 79 86 chr9 24997700 24997930 -117273514 + L1M4 LINE L1 4354 4584 -1562 2014 177 29 0 chr9 24998812 24999163 -117272281 - MER47A DNA MER2_type 0 366 6 346 297 25 0 chr9 24999170 24999288 -117272156 + GA-rich Low_complexity Low_complexity 2 122 0 189 0 0 0 chr9 24999734 24999755 -117271689 + (A)n Simple_repeat Simple_repeat 1 21 0 571 332 11 0 chr9 25000428 25000618 -117270826 + MIR SINE MIR 34 225 -37 261 232 40 30 chr9 25000801 25000900 -117270544 - L1MC5 LINE L1 -34 7927 7828 5670 160 19 4 chr9 25001034 25002096 -117269348 - L1MA4 LINE L1 -5 6295 5210 3153 162 25 78 chr9 25002102 25002885 -117268559 - L1MA4 LINE L1 -1058 5088 4347 784 296 91 57 chr9 25002886 25003515 -117267929 + L2 LINE L2 2627 3302 -11 293 330 35 9 chr9 25003764 25003879 -117267565 + LTR33 LTR ERVL 28 145 -376 261 333 187 27 chr9 25003947 25004172 -117267272 + LTR33 LTR ERVL 260 520 -1 209 276 35 17 chr9 25004212 25004270 -117267174 - L2 LINE L2 -4 3268 3210 236 156 44 0 chr9 25004492 25004537 -117266907 + (CATA)n Simple_repeat Simple_repeat 2 48 0 465 288 77 64 chr9 25004774 25005007 -117266437 + MIR SINE MIR 25 260 -2 24 0 0 0 chr9 25005200 25005224 -117266220 + AT_rich Low_complexity Low_complexity 1 24 0 2228 114 0 0 chr9 25005228 25005527 -117265917 - AluSx SINE Alu -13 299 1 339 304 56 24 chr9 25006740 25006865 -117264579 + MIR3 SINE MIR 14 142 -66 23 54 0 0 chr9 25007256 25007293 -117264151 + AT_rich Low_complexity Low_complexity 1 37 0 863 237 107 67 chr9 25007838 25008213 -117263231 - MLT1B LTR MaLR 0 390 1 24 53 0 0 chr9 25008253 25008291 -117263153 + AT_rich Low_complexity Low_complexity 1 38 0 223 188 16 16 chr9 25008298 25008362 -117263082 + (TA)n Simple_repeat Simple_repeat 1 64 0 1749 180 55 17 chr9 25010572 25010933 -117260511 - THE1C LTR MaLR 0 375 1 9505 124 42 30 chr9 25010933 25012493 -117258951 - THE1C-int LTR MaLR 0 1580 1 1783 159 48 40 chr9 25012493 25012865 -117258579 - THE1C LTR MaLR 0 375 1 2353 215 75 19 chr9 25012900 25013514 -117257930 + LTR48 LTR ERV1 1 648 -139 6849 119 7 12 chr9 25013596 25014816 -117256628 - L1MA1 LINE L1 -7 7714 6502 * 17114 184 31 18 chr9 25014811 25020321 -117251123 - L1MA1 LINE L1 -1665 5900 319 4134 162 13 3 chr9 25020338 25021036 -117250408 + MER50 LTR ERV1 7 711 -23 1291 214 43 4 chr9 25021037 25021313 -117250131 - L1MA1 LINE L1 -7260 305 19 473 171 74 30 chr9 25021313 25021461 -117249983 + LTR48 LTR ERV1 435 542 0 259 264 233 6 chr9 25021541 25021700 -117249744 + MIR SINE MIR 68 262 0 21 0 0 0 chr9 25021867 25021888 -117249556 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr9 25022915 25022942 -117248502 + AT_rich Low_complexity Low_complexity 1 27 0 481 278 112 6 chr9 25023344 25023513 -117247931 + MIR SINE MIR 70 256 -6 2210 187 52 41 chr9 25023962 25024503 -117246941 + L1MC3 LINE L1 7238 7784 -1 2030 201 36 27 chr9 25024759 25025197 -117246247 + MLT2B1 LTR ERVL 1 442 -78 1563 207 6 13 chr9 25025199 25025513 -117245931 - AluJo SINE Alu 0 312 1 284 0 28 0 chr9 25025535 25025571 -117245873 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 360 0 0 0 chr9 25025570 25025610 -117245834 + (TA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr9 25025611 25025645 -117245799 + (CA)n Simple_repeat Simple_repeat 2 35 0 199 328 107 25 chr9 25025798 25025920 -117245524 + MIR SINE MIR 90 221 -41 229 300 122 0 chr9 25026217 25026307 -117245137 - L2 LINE L2 -3 3269 3169 380 227 82 0 chr9 25026362 25026472 -117244972 + L1MC4 LINE L1 5764 5882 -1926 6517 234 37 40 chr9 25026480 25028529 -117242915 + L1M2 LINE L1 4 1982 -4867 18327 168 42 46 chr9 25028533 25030324 -117241120 + L1 LINE L1 19 1815 -5750 230 127 0 95 chr9 25030324 25030387 -117241057 - LTR13 LTR ERVK -287 720 664 18327 168 42 46 chr9 25030387 25032336 -117239108 + L1 LINE L1 1815 3809 -3756 252 325 151 6 chr9 25032808 25032974 -117238470 - MIR SINE MIR -13 249 60 25 51 0 0 chr9 25033129 25033168 -117238276 + AT_rich Low_complexity Low_complexity 1 39 0 574 78 11 11 chr9 25033372 25033462 -117237982 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 3154 197 20 22 chr9 25034470 25035180 -117236264 + L1 LINE L1 5861 6568 -997 2252 265 73 46 chr9 25035168 25036077 -117235367 + L1MC4 LINE L1 6738 7670 -372 * 478 174 22 201 chr9 25036129 25036353 -117235091 + L1MC4 LINE L1 7826 8009 -33 583 217 42 146 chr9 25036767 25037145 -117234299 - MER57A LTR ERV1 -2 401 63 257 258 20 93 chr9 25037231 25037343 -117234101 - MER103 DNA DNA -16 150 50 2235 90 0 10 chr9 25037343 25037643 -117233801 + AluY SINE Alu 1 297 -14 257 258 20 93 chr9 25037643 25037681 -117233763 - MER103 DNA DNA -116 50 11 254 239 84 0 chr9 25037843 25037914 -117233530 - LTR16A LTR ERVL -309 141 65 21 0 0 0 chr9 25038932 25038953 -117232491 + AT_rich Low_complexity Low_complexity 1 21 0 262 280 68 23 chr9 25040000 25040132 -117231312 + MIR SINE MIR 107 244 -18 264 122 0 0 chr9 25040195 25040236 -117231208 + (ATG)n Simple_repeat Simple_repeat 1 41 0 424 298 40 16 chr9 25040308 25040432 -117231012 + MIR3 SINE MIR 53 179 -29 2067 83 7 14 chr9 25040537 25040815 -117230629 - AluSg SINE Alu 0 310 35 21 0 0 0 chr9 25041396 25041417 -117230027 + AT_rich Low_complexity Low_complexity 1 21 0 370 167 69 0 chr9 25041786 25041858 -117229586 + Charlie5 DNA MER1_type 30 106 -2506 241 290 32 0 chr9 25041892 25041954 -117229490 - MIR SINE MIR -66 142 79 489 47 0 0 chr9 25042004 25042068 -117229376 + (GA)n Simple_repeat Simple_repeat 1 64 0 1409 149 68 4 chr9 25042070 25042318 -117229126 - MLT2D LTR ERVL -150 264 1 28 48 0 0 chr9 25044289 25044331 -117227113 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr9 25044497 25044537 -117226907 + AT_rich Low_complexity Low_complexity 1 40 0 377 372 37 18 chr9 25044625 25044843 -117226601 - MIR SINE MIR -19 243 22 227 258 31 113 chr9 25045068 25045165 -117226279 + L2 LINE L2 3224 3312 -1 1678 186 4 0 chr9 25046274 25046554 -117224890 - AluJo SINE Alu -31 281 1 249 281 160 31 chr9 25048177 25048590 -117222854 + HAL1b LINE L1 309 774 -574 365 308 18 96 chr9 25048819 25049209 -117222235 - MLT1H LTR MaLR -185 364 31 22 0 0 0 chr9 25049320 25049342 -117222102 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 25049384 25049419 -117222025 + AT_rich Low_complexity Low_complexity 1 35 0 734 170 0 0 chr9 25049430 25049542 -117221902 + FLAM_A SINE Alu 1 112 -30 420 343 47 33 chr9 25049579 25050031 -117221413 + L1M4 LINE L1 2131 2588 -3558 1089 318 24 37 chr9 25050178 25050641 -117220803 - MER90 LTR ERV1 -31 544 88 1904 215 64 52 chr9 25050699 25051258 -117220186 + MLT1F1 LTR MaLR 2 567 0 391 256 70 63 chr9 25051427 25051697 -117219747 + L1MC4 LINE L1 7769 8040 -2 806 271 104 38 chr9 25051724 25052245 -117219199 + L1ME4a LINE L1 5563 6117 -4 29 0 0 0 chr9 25052267 25052296 -117219148 + AT_rich Low_complexity Low_complexity 1 29 0 5422 107 13 0 chr9 25052715 25053507 -117217937 - L1P LINE L1 -3741 2405 1604 558 211 31 8 chr9 25054123 25054251 -117217193 - MER103 DNA DNA -10 156 26 240 311 97 29 chr9 25055151 25055254 -117216190 + L2 LINE L2 3102 3211 -61 474 216 84 26 chr9 25055407 25055562 -117215882 + L1P5 LINE L1 5499 5669 -482 587 253 63 17 chr9 25055591 25055828 -117215616 - L1M4 LINE L1 -2591 3555 3308 1830 157 11 0 chr9 25055879 25056166 -117215278 - AluSx SINE Alu -22 290 1 5335 154 28 13 chr9 25056185 25057159 -117214285 - L1MA4 LINE L1 -5 6295 5308 2050 202 20 11 chr9 25057152 25057612 -117213832 - L1MA4 LINE L1 -1842 4304 3841 * 2210 23 0 0 chr9 25058794 25059053 -117212391 - L1PA3 LINE L1 0 6155 5897 238 269 0 19 chr9 25059117 25059169 -117212275 - L2 LINE L2 -12 3260 3210 330 321 45 15 chr9 25059172 25059306 -117212138 - MIR SINE MIR -118 144 7 387 304 0 17 chr9 25060942 25061057 -117210387 - MIR SINE MIR -97 165 53 241 345 91 0 chr9 25062209 25062319 -117209125 - MER91C DNA MER1_type -11 129 10 2142 153 89 0 chr9 25062359 25062752 -117208692 - MSTA LTR MaLR 0 428 1 870 304 9 69 chr9 25063388 25063851 -117207593 - L2 LINE L2 0 3313 2879 252 0 0 0 chr9 25064293 25064321 -117207123 + (CA)n Simple_repeat Simple_repeat 2 29 0 449 245 48 20 chr9 25064728 25064875 -117206569 + LTR33 LTR ERVL 369 519 -2 213 150 0 25 chr9 25065446 25065486 -117205958 + (GAA)n Simple_repeat Simple_repeat 2 40 0 317 290 7 87 chr9 25065707 25065845 -117205599 + L1MEd LINE L1 1131 1257 -4862 297 397 38 5 chr9 25066092 25066276 -117205168 + MIR SINE MIR 11 200 -62 354 138 0 0 chr9 25068699 25068757 -117202687 + (CA)n Simple_repeat Simple_repeat 1 58 0 238 330 11 33 chr9 25069405 25069496 -117201948 - L2 LINE L2 -18 3295 3207 650 320 181 18 chr9 25069550 25069967 -117201477 - L2 LINE L2 -216 3097 2601 1402 138 96 4 chr9 25069968 25070207 -117201237 + AluSq SINE Alu 9 269 -44 333 241 199 16 chr9 25070216 25070407 -117201037 - L2 LINE L2 -696 2618 2393 306 236 49 62 chr9 25070812 25070956 -117200488 + L1MC/D LINE L1 5347 5488 -2320 329 303 77 19 chr9 25071596 25071751 -117199693 - MER5A DNA MER1_type -8 181 18 214 183 33 17 chr9 25071997 25072057 -117199387 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 288 267 0 0 chr9 25072933 25073064 -117198380 + (TA)n Simple_repeat Simple_repeat 2 132 0 699 262 218 29 chr9 25073303 25073712 -117197732 - MLT1H LTR MaLR -17 532 47 590 365 4 9 chr9 25074535 25074765 -117196679 - MIR SINE MIR 0 262 34 21 0 0 0 chr9 25074801 25074822 -117196622 + AT_rich Low_complexity Low_complexity 1 21 0 230 171 0 0 chr9 25075028 25075069 -117196375 + L2 LINE L2 3261 3301 -12 1814 171 0 3 chr9 25075495 25075788 -117195656 - AluSx SINE Alu -20 292 1 23 0 0 0 chr9 25075899 25075922 -117195522 + AT_rich Low_complexity Low_complexity 1 23 0 195 286 101 79 chr9 25076182 25076360 -117195084 + MER5A DNA MER1_type 8 189 0 24 32 0 0 chr9 25077319 25077350 -117194094 + AT_rich Low_complexity Low_complexity 1 31 0 293 283 178 67 chr9 25077553 25077733 -117193711 - MIR SINE MIR -14 248 49 22 35 0 0 chr9 25077963 25077992 -117193452 + AT_rich Low_complexity Low_complexity 1 29 0 2008 143 153 8 chr9 25079397 25079769 -117191675 + MSTA LTR MaLR 1 426 -2 12834 102 6 19 chr9 25079893 25081942 -117189502 + L1PA7 LINE L1 2 2045 -4416 * 17518 112 4 10 chr9 25081938 25085174 -117186270 + L1PA7 LINE L1 3008 6225 -244 2230 71 6 74 chr9 25085175 25085527 -117185917 + L1PA7 LINE L1 5827 6154 0 2042 104 74 0 chr9 25085527 25085877 -117185567 + L1PA11 LINE L1 5814 6192 0 1707 280 62 34 chr9 25087172 25087336 -117184108 - HAL1 LINE L1 -135 2372 2214 339 78 0 0 chr9 25087336 25087387 -117184057 + (CA)n Simple_repeat Simple_repeat 2 52 0 1707 280 62 34 chr9 25087387 25088115 -117183329 - HAL1 LINE L1 -293 2214 1455 557 183 0 17 chr9 25088138 25088253 -117183191 - AluY SINE Alu -7 304 192 844 133 0 0 chr9 25088253 25088373 -117183071 - AluJb SINE Alu -168 144 25 570 256 35 20 chr9 25088395 25088594 -117182850 - HAL1 LINE L1 -1063 1444 1243 * 726 239 22 45 chr9 25088593 25088861 -117182583 - L1MA9 LINE L1 -25 6287 6026 330 310 35 97 chr9 25089287 25089597 -117181847 - HAL1 LINE L1 -1705 802 512 2572 202 72 2 chr9 25090658 25091174 -117180270 - MER68 LTR ERV1 -10 552 1 1679 99 59 131 chr9 25091387 25091791 -117179653 + THE1C LTR MaLR 1 375 0 1248 241 64 60 chr9 25092049 25092564 -117178880 - MLT2B1 LTR ERVL -3 517 1 195 69 0 0 chr9 25095174 25095203 -117176241 + (T)n Simple_repeat Simple_repeat 1 29 0 459 347 53 11 chr9 25095856 25096046 -117175398 - MIR SINE MIR -3 259 62 21 82 0 0 chr9 25097648 25097697 -117173747 + AT_rich Low_complexity Low_complexity 1 49 0 821 281 31 4 chr9 25098069 25098297 -117173147 - MIR SINE MIR -1 261 28 2698 152 8 2 chr9 25098858 25099338 -117172106 - L1MA4A LINE L1 0 6303 5821 240 295 39 101 chr9 25099966 25100095 -117171349 + L2 LINE L2 3184 3304 -9 1828 144 76 17 chr9 25100358 25100712 -117170732 - THE1C LTR MaLR 0 375 1 305 321 53 63 chr9 25100732 25100922 -117170522 + MIR3 SINE MIR 20 207 -1 2572 53 0 0 chr9 25100990 25101294 -117170150 + AluY SINE Alu 1 304 -7 495 203 68 0 chr9 25101689 25101807 -117169637 - L1MC4 LINE L1 -3 8039 7914 259 303 37 21 chr9 25101834 25102022 -117169422 + L1MB1 LINE L1 5691 5881 -240 33 25 0 0 chr9 25103520 25103560 -117167884 + AT_rich Low_complexity Low_complexity 1 40 0 396 326 25 41 chr9 25103573 25103769 -117167675 - L2 LINE L2 -832 2482 2290 650 174 0 47 chr9 25104751 25104856 -117166588 + L1MB1 LINE L1 6022 6118 -71 1722 176 25 0 chr9 25104856 25105140 -117166304 + AluJb SINE Alu 2 292 -20 650 174 0 47 chr9 25105140 25105209 -117166235 + L1MB1 LINE L1 6118 6189 0 1105 261 99 79 chr9 25106029 25106307 -117165137 - L2 LINE L2 -1 3312 3041 1958 144 13 7 chr9 25106307 25106612 -117164832 + AluSx SINE Alu 1 307 -5 1105 261 99 79 chr9 25106612 25107079 -117164365 - L2 LINE L2 -272 3041 2553 1275 273 42 15 chr9 25107137 25107543 -117163901 + LTR16C LTR ERVL 72 488 -3 1021 290 23 7 chr9 25107564 25107864 -117163580 - L2 LINE L2 -900 2414 2110 314 294 0 0 chr9 25107871 25107939 -117163505 + MER58 DNA MER1_type 1 68 -147 350 173 40 27 chr9 25108071 25108146 -117163298 + MER58 DNA MER1_type 2345 2420 0 486 282 84 27 chr9 25108150 25108412 -117163032 - L2 LINE L2 -1212 2102 1826 25 0 0 0 chr9 25109019 25109044 -117162400 + AT_rich Low_complexity Low_complexity 1 25 0 307 257 20 118 chr9 25109389 25109541 -117161903 + L2 LINE L2 3175 3311 -2 962 161 11 33 chr9 25109620 25109800 -117161644 + AluSg/x SINE Alu 137 312 0 21 57 0 0 chr9 25110091 25110126 -117161318 + AT_rich Low_complexity Low_complexity 1 35 0 621 164 86 125 chr9 25110142 25110422 -117161022 + L1MC5 LINE L1 6691 6959 -1002 1545 199 6 29 chr9 25110886 25111197 -117160247 - AluJo SINE Alu -8 304 1 22 35 0 0 chr9 25111508 25111537 -117159907 + AT_rich Low_complexity Low_complexity 1 29 0 646 100 91 0 chr9 25112424 25112534 -117158910 - L1MA9 LINE L1 -9 6303 6184 1307 115 0 0 chr9 25112540 25112722 -117158722 + AluSg/x SINE Alu 130 311 -1 1560 191 31 14 chr9 25112722 25113072 -117158372 - L1MA9 LINE L1 -175 6137 5782 599 222 6 62 chr9 25113128 25113290 -117158154 - MER5A DNA MER1_type -1 188 36 625 269 47 2 chr9 25114121 25114316 -117157128 - MIR SINE MIR -24 238 32 2080 190 58 11 chr9 25114544 25115417 -117156027 - LTR28 LTR ERV1 -1 1019 1 413 312 98 33 chr9 25116615 25116830 -117154614 - MIR SINE MIR -16 246 18 6573 72 14 0 chr9 25118032 25119433 -117152011 - L1PA7 LINE L1 -5 6149 4738 2440 90 0 0 chr9 25119446 25119757 -117151687 + AluY SINE Alu 1 311 0 7961 74 16 14 chr9 25119757 25120312 -117151132 + L1P LINE L1 2899 3452 -2694 2900 3 0 0 chr9 25120312 25120623 -117150821 - AluYb8 SINE Alu -7 311 1 7961 74 16 14 chr9 25120623 25121212 -117150232 + L1P LINE L1 3452 4045 -2101 228 143 29 29 chr9 25122098 25122168 -117149276 - L1ME4a LINE L1 -5 6116 6047 233 279 16 0 chr9 25122842 25122903 -117148541 - MIR SINE MIR -27 235 174 1371 202 18 57 chr9 25123053 25123389 -117148055 - LTR8A LTR ERV1 -3 724 402 2171 127 0 0 chr9 25123416 25123724 -117147720 + AluSg SINE Alu 1 308 -2 29 0 0 0 chr9 25123936 25123965 -117147479 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 25123976 25124004 -117147440 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr9 25125875 25125925 -117145519 + AT_rich Low_complexity Low_complexity 1 50 0 198 71 0 0 chr9 25126956 25126984 -117144460 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 547 122 0 71 chr9 25127006 25127104 -117144340 + MSTB1 LTR MaLR 1 91 -341 1976 199 58 40 chr9 25127412 25127969 -117143475 + L1ME2 LINE L1 5429 5995 -169 2146 211 119 27 chr9 25127986 25128650 -117142794 + MER50 LTR ERV1 10 734 0 431 243 74 27 chr9 25128757 25128905 -117142539 + L1MA10 LINE L1 6178 6332 -2 1023 176 143 52 chr9 25129085 25129266 -117142178 - AluJb SINE Alu -5 297 81 306 0 0 0 chr9 25129266 25129300 -117142144 + (TG)n Simple_repeat Simple_repeat 1 34 0 1023 176 143 52 chr9 25129300 25129390 -117142054 - AluJb SINE Alu -221 81 1 617 320 86 5 chr9 25129590 25129812 -117141632 + MIR SINE MIR 23 262 0 1827 146 7 23 chr9 25129957 25130259 -117141185 + AluJb SINE Alu 1 297 -15 202 281 114 44 chr9 25131017 25131131 -117140313 + L2 LINE L2 3192 3313 0 1044 246 74 26 chr9 25132211 25132641 -117138803 + L1M4 LINE L1 2555 3005 -3141 29 28 0 0 chr9 25132761 25132797 -117138647 + AT_rich Low_complexity Low_complexity 1 36 0 611 310 72 30 chr9 25132837 25133125 -117138319 + L1M2b LINE L1 1237 1722 -5487 5163 242 66 11 chr9 25133132 25134565 -117136879 + L1M2 LINE L1 816 2327 -4522 551 202 24 0 chr9 25134668 25134923 -117136521 + (TA)n Simple_repeat Simple_repeat 1 261 0 183 395 55 0 chr9 25135242 25135351 -117136093 - MIR SINE MIR -78 130 16 270 0 0 0 chr9 25135353 25135383 -117136061 + (TG)n Simple_repeat Simple_repeat 1 30 0 284 263 17 85 chr9 25136033 25136151 -117135293 - MIR SINE MIR -46 216 107 1240 269 79 30 chr9 25136344 25136775 -117134669 - LTR16B LTR ERVL -12 452 1 263 301 130 0 chr9 25137331 25137468 -117133976 - MIR SINE MIR -27 181 34 23 68 0 0 chr9 25137797 25137841 -117133603 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr9 25139931 25139951 -117131493 + (A)n Simple_repeat Simple_repeat 1 20 0 2704 118 49 5 chr9 25140289 25140714 -117130730 + MLT2A1 LTR ERVL 1 444 0 220 292 202 0 chr9 25140806 25140895 -117130549 - MIR SINE MIR 0 262 156 239 380 65 19 chr9 25141488 25141704 -117129740 - L2 LINE L2 -468 2846 2621 1371 129 0 0 chr9 25142119 25142313 -117129131 - AluSg/x SINE Alu -21 291 98 4742 58 28 0 chr9 25142743 25143350 -117128094 - L1PA7 LINE L1 -2 6152 5529 21 0 0 0 chr9 25143529 25143550 -117127894 + AT_rich Low_complexity Low_complexity 1 21 0 6449 171 56 39 chr9 25144174 25145452 -117125992 - HSMAR2 DNA Mariner -1 1301 2 283 306 28 19 chr9 25145588 25145696 -117125748 + GA-rich Low_complexity Low_complexity 3 111 0 295 302 50 44 chr9 25145897 25146056 -117125388 + MIR SINE MIR 103 262 0 288 317 0 27 chr9 25146329 25146452 -117124992 + MER5A DNA MER1_type 3 111 -67 722 292 31 4 chr9 25146655 25146881 -117124563 + MIR SINE MIR 31 262 0 2501 136 82 17 chr9 25149882 25150344 -117121100 + LTR22B LTR ERVK 1 492 0 508 335 44 64 chr9 25150391 25150687 -117120757 - L3 LINE CR1 -108 1469 1180 1287 285 102 25 chr9 25152846 25154112 -117117332 + L1MEc LINE L1 1656 3055 -3160 2775 12 0 19 chr9 25154121 25154445 -117116999 + AluYb8 SINE Alu 1 318 0 2078 170 80 15 chr9 25154537 25154926 -117116518 + MSTA LTR MaLR 15 428 0 8853 182 16 6 chr9 25154926 25156560 -117114884 + MSTA-int LTR MaLR 1 1650 -1 1844 165 86 34 chr9 25156561 25156968 -117114476 + MSTA LTR MaLR 1 428 0 711 261 91 20 chr9 25156970 25157423 -117114021 + L1MEc LINE L1 3133 3617 -2598 294 29 0 0 chr9 25157429 25157464 -117113980 + (TG)n Simple_repeat Simple_repeat 2 36 0 797 297 62 27 chr9 25157494 25158009 -117113435 + L1MEc LINE L1 3697 4229 -1986 494 350 6 0 chr9 25158209 25158386 -117113058 + MIR SINE MIR 78 255 -7 475 298 44 24 chr9 25158629 25158834 -117112610 + L2 LINE L2 2224 2432 -882 421 286 21 43 chr9 25158874 25159014 -117112430 + L2 LINE L2 3136 3272 0 1925 130 149 11 chr9 25163015 25163391 -117108053 + MSTA LTR MaLR 1 428 0 221 214 55 41 chr9 25163573 25163718 -117107726 + (TATAA)n Simple_repeat Simple_repeat 1 147 0 1119 258 67 80 chr9 25164472 25165094 -117106350 + L1MEc LINE L1 3756 4365 -1850 2178 117 0 9 chr9 25165094 25165410 -117106034 + AluSq SINE Alu 1 313 0 1119 258 67 80 chr9 25165410 25165650 -117105794 + L1MEc LINE L1 4365 4607 -1608 231 275 0 33 chr9 25165686 25165777 -117105667 + L1MEc LINE L1 4824 4911 -1304 303 245 122 45 chr9 25166003 25166248 -117105196 + L1M4 LINE L1 3729 3992 -2154 1134 263 49 80 chr9 25166274 25166974 -117104470 - L1MEc LINE L1 -3118 3097 2420 202 75 38 57 chr9 25166974 25167027 -117104417 + (TA)n Simple_repeat Simple_repeat 2 53 0 370 252 42 103 chr9 25167031 25167399 -117104045 - L1MEc LINE L1 -3802 2413 2109 313 278 145 40 chr9 25168719 25169211 -117102233 - L1P LINE L1 -846 1661 1112 635 226 6 28 chr9 25170199 25170376 -117101068 - L1ME4a LINE L1 -187 5934 5762 241 188 21 0 chr9 25171100 25171148 -117100296 + T-rich Low_complexity Low_complexity 2 50 0 210 71 0 0 chr9 25171721 25171749 -117099695 + (T)n Simple_repeat Simple_repeat 1 28 0 360 293 51 37 chr9 25172279 25172466 -117098978 + MIR SINE MIR 8 193 -62 2421 79 0 0 chr9 25172681 25172986 -117098458 - AluY SINE Alu -6 305 1 251 206 59 88 chr9 25173173 25173275 -117098169 + L3 LINE CR1 659 757 -820 2637 183 8 17 chr9 25174488 25175014 -117096430 + L1MB7 LINE L1 5643 6163 -21 1580 260 22 28 chr9 25175021 25175518 -117095926 + L1ME3A LINE L1 5417 5910 -260 1983 119 0 30 chr9 25175518 25175821 -117095623 + AluSg SINE Alu 1 294 -16 303 93 0 0 chr9 25175821 25175864 -117095580 + (TA)n Simple_repeat Simple_repeat 1 43 0 225 133 0 0 chr9 25175864 25175909 -117095535 + LTR66 LTR ERVL 394 438 -172 794 232 73 24 chr9 25175919 25176165 -117095279 + L1ME3A LINE L1 5908 6165 -5 181 337 12 35 chr9 25176240 25176326 -117095118 - L3 LINE CR1 -913 664 581 245 302 163 20 chr9 25176417 25176619 -117094825 - L3 LINE CR1 -1146 431 201 7475 35 0 0 chr9 25176621 25177538 -117093906 + L1PA3 LINE L1 5236 6152 -3 22 0 0 0 chr9 25177538 25177560 -117093884 + AT_rich Low_complexity Low_complexity 1 22 0 2557 142 14 34 chr9 25177628 25178065 -117093379 - MSTC LTR MaLR 0 428 1 245 333 21 0 chr9 25178411 25178504 -117092940 - L3b LINE CR1 -145 1438 1344 535 279 85 18 chr9 25178687 25178904 -117092540 + MIR SINE MIR 32 262 0 376 132 0 15 chr9 25179346 25179414 -117092030 - L1MA6 LINE L1 -347 5953 5887 600 122 158 14 chr9 25179415 25179501 -117091943 + L1MA8 LINE L1 6130 6202 -89 393 22 0 0 chr9 25179501 25179547 -117091897 + (TATG)n Simple_repeat Simple_repeat 3 48 0 600 122 158 14 chr9 25179547 25179599 -117091845 + L1MA8 LINE L1 6202 6288 -3 667 164 62 88 chr9 25180545 25180762 -117090682 + MLT1A1 LTR MaLR 1 193 -172 668 205 0 8 chr9 25180966 25181093 -117090351 + MLT1A1 LTR MaLR 235 360 -5 307 325 103 34 chr9 25181111 25181345 -117090099 + MIR SINE MIR 7 256 -6 256 301 6 49 chr9 25182684 25182867 -117088577 + GA-rich Low_complexity Low_complexity 4 178 0 207 260 130 50 chr9 25183408 25183508 -117087936 - L2 LINE L2 -21 3292 3185 339 305 143 35 chr9 25183962 25184165 -117087279 - L2 LINE L2 -629 2685 2461 302 297 8 16 chr9 25184333 25184461 -117086983 + (TGAA)n Simple_repeat Simple_repeat 1 127 0 1349 215 76 39 chr9 25185134 25185516 -117085928 - L1MA10 LINE L1 -1 6333 5938 812 249 0 0 chr9 25185516 25185693 -117085751 - FRAM SINE Alu 0 176 1 273 207 122 24 chr9 25185701 25185783 -117085661 - L1MA10 LINE L1 -247 5942 5853 1614 170 45 3 chr9 25186595 25186930 -117084514 - L1MA8 LINE L1 -7 6284 5936 11230 98 135 14 chr9 25188176 25190018 -117081426 - L1PBa LINE L1 -4162 2701 637 1284 140 0 0 chr9 25190021 25190221 -117081223 - L1PBa LINE L1 -6663 200 1 383 206 134 0 chr9 25190256 25190353 -117081091 - MER53 DNA DNA -1 188 79 1990 135 12 4 chr9 25190572 25190989 -117080455 - L1M2 LINE L1 -743 5403 5023 4517 147 49 43 chr9 25191069 25191536 -117079908 - L1PA16 LINE L1 -21 6145 5683 2493 74 0 0 chr9 25191536 25191846 -117079598 - AluY SINE Alu -1 310 1 4517 147 49 43 chr9 25191846 25192902 -117078542 - L1PA16 LINE L1 -483 5683 4625 265 184 0 0 chr9 25193048 25193097 -117078347 - L1M2 LINE L1 -2130 4016 3968 2785 214 15 71 chr9 25193100 25193360 -117078084 - L1PA16 LINE L1 -3604 2542 2269 1865 151 0 0 chr9 25193360 25193631 -117077813 - AluSx SINE Alu -37 275 5 2785 214 15 71 chr9 25193631 25194174 -117077270 - L1PA16 LINE L1 -3877 2269 1784 2726 256 81 42 chr9 25194511 25195058 -117076386 + L1M3b LINE L1 2079 2603 -4962 2212 112 0 0 chr9 25195058 25195352 -117076092 + AluSg SINE Alu 1 294 -16 297 0 0 0 chr9 25195352 25195385 -117076059 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 2726 256 81 42 chr9 25195385 25195530 -117075914 + L1M3b LINE L1 2603 2741 -4824 369 0 0 0 chr9 25195530 25195571 -117075873 + (CA)n Simple_repeat Simple_repeat 2 42 0 2726 256 81 42 chr9 25195571 25195708 -117075736 + L1M3b LINE L1 2741 2871 -4694 180 0 0 0 chr9 25195708 25195728 -117075716 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2726 256 81 42 chr9 25195728 25196741 -117074703 + L1M3b LINE L1 2871 3901 -3664 3276 252 40 34 chr9 25196845 25198006 -117073438 - L1M4 LINE L1 -1118 5028 3860 2036 280 71 40 chr9 25198112 25199230 -117072214 + L1MEc LINE L1 485 1566 -4830 2117 123 45 31 chr9 25199230 25199589 -117071855 - THE1B LTR MaLR 0 364 1 10376 108 27 25 chr9 25199589 25200284 -117071160 - THE1B-int LTR MaLR 0 1580 888 2331 93 0 13 chr9 25200284 25200597 -117070847 - AluSp SINE Alu -4 309 1 10376 108 27 25 chr9 25200597 25201477 -117069967 - THE1B-int LTR MaLR -692 888 1 1689 131 134 27 chr9 25201477 25201806 -117069638 - THE1B LTR MaLR 0 364 1 2036 280 71 40 chr9 25201806 25202021 -117069423 + L1MEc LINE L1 1565 1862 -4534 438 229 44 49 chr9 25202064 25202247 -117069197 + L1M4 LINE L1 55 236 -6306 1600 234 110 39 chr9 25202833 25203072 -117068372 + L1M4 LINE L1 869 1090 -5556 2797 23 0 0 chr9 25203072 25203382 -117068062 + AluYa5 SINE Alu 1 310 -1 1600 234 110 39 chr9 25203382 25204130 -117067314 + L1M4 LINE L1 1090 1922 -4724 385 268 60 33 chr9 25204149 25204332 -117067112 + L1M4 LINE L1 4727 4914 -1730 1095 224 32 35 chr9 25204433 25204668 -117066776 + L1M3b LINE L1 4874 5109 -2456 192 40 0 0 chr9 25204668 25204693 -117066751 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1095 224 32 35 chr9 25204693 25204797 -117066647 + L1M3b LINE L1 5109 5212 -2353 327 230 60 20 chr9 25204801 25204901 -117066543 - L2 LINE L2 -97 3216 3113 1370 239 18 12 chr9 25207634 25207965 -117063479 - MLT1A1 LTR MaLR -28 337 5 1626 174 44 4 chr9 25208095 25208370 -117063074 + AluJb SINE Alu 1 286 -26 188 298 81 48 chr9 25208899 25209023 -117062421 + MIR3 SINE MIR 4 131 -77 355 177 48 0 chr9 25210740 25210802 -117060642 - L2 LINE L2 0 3313 3249 375 41 0 0 chr9 25212887 25212936 -117058508 + (CA)n Simple_repeat Simple_repeat 2 50 0 1597 189 4 0 chr9 25213061 25213336 -117058108 + AluJo SINE Alu 1 276 -36 240 35 0 0 chr9 25213380 25213409 -117058035 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 250 343 94 21 chr9 25213587 25213820 -117057624 + L2 LINE L2 2812 3061 -211 891 180 6 12 chr9 25214608 25214769 -117056675 + THE1C LTR MaLR 1 160 -215 1437 88 0 10 chr9 25214769 25214963 -117056481 - AluY SINE Alu 0 311 120 1022 154 15 31 chr9 25214964 25215159 -117056285 + THE1C LTR MaLR 182 373 -2 9951 133 11 32 chr9 25215161 25216775 -117054669 + THE1C-int LTR MaLR 1 1580 0 2011 145 24 19 chr9 25216775 25217148 -117054296 + THE1C LTR MaLR 1 375 0 21 82 0 0 chr9 25217289 25217338 -117054106 + AT_rich Low_complexity Low_complexity 1 49 0 22 88 0 0 chr9 25217462 25217519 -117053925 + AT_rich Low_complexity Low_complexity 1 57 0 2675 166 79 13 chr9 25217706 25217893 -117053551 + L1PB4 LINE L1 5584 5757 -399 342 0 0 0 chr9 25217893 25217931 -117053513 + (CA)n Simple_repeat Simple_repeat 2 39 0 2675 166 79 13 chr9 25217931 25218274 -117053170 + L1PB4 LINE L1 5757 6149 -7 5228 116 4 13 chr9 25218351 25218631 -117052813 + L1MA2 LINE L1 5487 5768 -536 2175 128 0 0 chr9 25218631 25218935 -117052509 + AluSx SINE Alu 1 304 -8 5228 116 4 13 chr9 25218935 25219475 -117051969 + L1MA2 LINE L1 5768 6299 -5 21 36 0 0 chr9 25219475 25219503 -117051941 + AT_rich Low_complexity Low_complexity 1 28 0 869 201 6 0 chr9 25219524 25219683 -117051761 - AluY SINE Alu -20 291 132 256 188 0 62 chr9 25219844 25219908 -117051536 - LTR33A LTR ERVL -43 480 421 24 0 0 0 chr9 25220210 25220234 -117051210 + AT_rich Low_complexity Low_complexity 1 24 0 1067 269 94 17 chr9 25220254 25220755 -117050689 + MLT1G LTR MaLR 9 590 0 7986 66 3 11 chr9 25221934 25222962 -117048482 - MER11C LTR ERVK 0 1071 52 365 85 0 0 chr9 25222960 25223007 -117048437 + MER11B LTR ERVK 21 67 -1169 * 208 280 20 0 chr9 25223109 25223159 -117048285 - L2 LINE L2 -19 3253 3203 2186 125 3 3 chr9 25223170 25223483 -117047961 + AluSp SINE Alu 1 313 0 885 259 62 0 chr9 25223707 25223981 -117047463 + L1ME2 LINE L1 5832 6122 -42 388 325 138 33 chr9 25224264 25224691 -117046753 + L1M4 LINE L1 4892 5363 -783 461 254 8 8 chr9 25225014 25225132 -117046312 + L1MD3 LINE L1 6661 6778 -1217 8509 220 51 34 chr9 25225133 25226571 -117044873 + L1MA9 LINE L1 2977 4390 -3175 2367 90 0 0 chr9 25226571 25226871 -117044573 + AluY SINE Alu 1 300 -11 8509 220 51 34 chr9 25226871 25228437 -117043007 + L1MA9 LINE L1 4390 6056 -1509 4337 69 0 0 chr9 25228434 25229014 -117042430 - L1PA4 LINE L1 -4542 1604 1025 * 23893 35 4 0 chr9 25229013 25233576 -117037868 + L1PA4 LINE L1 1579 6152 -3 4778 197 54 10 chr9 25233573 25234686 -117036758 + L1MA9 LINE L1 6044 7249 -482 * 315 71 0 0 chr9 25234686 25234728 -117036716 + (CA)n Simple_repeat Simple_repeat 2 43 0 4778 197 54 10 chr9 25234728 25235234 -117036210 + L1MA9 LINE L1 7249 7731 0 261 267 75 32 chr9 25235231 25235418 -117036026 + L1MC5 LINE L1 7507 7701 -260 * 273 146 0 0 chr9 25235492 25235540 -117035904 + (TA)n Simple_repeat Simple_repeat 1 48 0 377 319 43 17 chr9 25237148 25237264 -117034180 + L2 LINE L2 3151 3269 -3 319 333 19 26 chr9 25237584 25237740 -117033704 + L2 LINE L2 2599 2753 -561 257 429 0 47 chr9 25237865 25238035 -117033409 + L2 LINE L2 2918 3079 -193 408 342 95 14 chr9 25238056 25238278 -117033166 + MIR SINE MIR 5 244 -18 231 360 112 0 chr9 25238353 25238442 -117033002 + L2 LINE L2 3133 3231 -41 1138 256 57 30 chr9 25239282 25239671 -117031773 + L1MCc LINE L1 3 738 -5684 4721 236 76 23 chr9 25239823 25240071 -117031373 + L1MCc LINE L1 2774 3007 -3934 2542 46 7 0 chr9 25240071 25240377 -117031067 + AluY SINE Alu 1 308 -3 4721 236 76 23 chr9 25240377 25242028 -117029416 + L1MCc LINE L1 3007 4743 -2198 1528 197 128 163 chr9 25242048 25242523 -117028921 + MLT2B3 LTR ERVL 1 510 -44 234 0 0 0 chr9 25242523 25242549 -117028895 + (TG)n Simple_repeat Simple_repeat 2 27 0 1528 197 128 163 chr9 25242549 25242593 -117028851 + MLT2B3 LTR ERVL 510 554 0 515 286 0 19 chr9 25242602 25242756 -117028688 + L1MCc LINE L1 4763 4913 -2028 502 223 50 14 chr9 25242954 25243093 -117028351 + L1MCc LINE L1 4907 5050 -1891 * 6280 177 47 9 chr9 25243090 25244336 -117027108 + L1MC3 LINE L1 6493 7785 0 186 323 32 48 chr9 25244941 25245065 -117026379 + MIR SINE MIR 47 168 -94 362 215 21 0 chr9 25245073 25245166 -117026278 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 232 175 0 0 chr9 25245272 25245312 -117026132 + L3 LINE CR1 1514 1553 -24 193 154 58 58 chr9 25245281 25245333 -117026111 + L3b LINE CR1 1529 1580 -3 * 315 325 18 26 chr9 25246812 25246926 -117024518 + MIR SINE MIR 22 134 -128 435 344 93 5 chr9 25246957 25247227 -117024217 + L2 LINE L2 2720 3017 -296 418 235 31 0 chr9 25247238 25247336 -117024108 + Tigger3b DNA MER2_type 2 102 -1129 236 75 75 0 chr9 25247342 25247382 -117024062 + Tigger3b DNA MER2_type 282 324 -907 303 28 0 0 chr9 25247384 25247420 -117024024 + (TG)n Simple_repeat Simple_repeat 2 37 0 323 105 18 0 chr9 25247420 25247477 -117023967 + (TA)n Simple_repeat Simple_repeat 2 59 0 4394 110 18 20 chr9 25247481 25248189 -117023255 + Tigger3b DNA MER2_type 340 1046 -185 1118 121 0 0 chr9 25248433 25248590 -117022854 + Tigger3b DNA MER2_type 1049 1205 -26 310 336 100 0 chr9 25248901 25249011 -117022433 + L2 LINE L2 3136 3256 -16 246 370 91 0 chr9 25250482 25250647 -117020797 + MIR SINE MIR 83 262 0 24 67 0 0 chr9 25251026 25251071 -117020373 + AT_rich Low_complexity Low_complexity 1 45 0 340 346 84 11 chr9 25251496 25251675 -117019769 - Charlie8 DNA MER1_type -2141 276 85 333 0 0 0 chr9 25251677 25251714 -117019730 + (A)n Simple_repeat Simple_repeat 1 37 0 2421 90 0 0 chr9 25253559 25253860 -117017584 - AluSg SINE Alu -9 301 1 2099 116 14 0 chr9 25253870 25254164 -117017280 - AluSc SINE Alu -11 298 1 185 421 83 0 chr9 25254169 25254302 -117017142 + L2 LINE L2 3089 3232 -40 1223 253 84 45 chr9 25254478 25254941 -117016503 - LTR33 LTR ERVL -1 520 40 1683 154 58 61 chr9 25255312 25255616 -117015828 + THE1C LTR MaLR 1 305 -70 2467 79 0 0 chr9 25255616 25255921 -117015523 + AluY SINE Alu 1 305 -6 1683 154 58 61 chr9 25255921 25255992 -117015452 + THE1C LTR MaLR 305 375 0 1694 139 0 0 chr9 25256325 25256592 -117014852 + L1MA4A LINE L1 6026 6292 -11 675 266 130 5 chr9 25256811 25257018 -117014426 - MIR SINE MIR -24 238 6 26 0 0 0 chr9 25257279 25257305 -117014139 + AT_rich Low_complexity Low_complexity 1 26 0 222 223 287 0 chr9 25257373 25257467 -117013977 + L2 LINE L2 1899 2019 -1295 3082 137 101 20 chr9 25257468 25258048 -117013396 - LTR49 LTR ERV1 0 595 1 886 331 67 59 chr9 25258050 25258616 -117012828 + L2 LINE L2 2067 2627 -686 1705 176 65 9 chr9 25258616 25258939 -117012505 + MER2 DNA MER2_type 2 342 -2 886 331 67 59 chr9 25258939 25259578 -117011866 + L2 LINE L2 2627 3284 -29 202 294 51 85 chr9 25259605 25259782 -117011662 - L2 LINE L2 -46 3267 3097 362 301 35 9 chr9 25259876 25259989 -117011455 - MIR SINE MIR -130 132 17 3446 166 2 2 chr9 25261785 25262376 -117009068 + L1MB2 LINE L1 5577 6167 -4 299 219 55 14 chr9 25262556 25262629 -117008815 - MIR SINE MIR -83 179 104 180 293 0 0 chr9 25262863 25262904 -117008540 - L2 LINE L2 -11 3302 3262 403 304 37 43 chr9 25262917 25263078 -117008366 - MIR SINE MIR -91 171 12 330 306 89 27 chr9 25266020 25266426 -117005018 - MLT1L LTR MaLR -2 613 142 2470 61 0 7 chr9 25267353 25267663 -117003781 + AluY SINE Alu 1 308 -3 2197 96 7 13 chr9 25268745 25269048 -117002396 - AluSx SINE Alu -11 301 1 269 226 95 29 chr9 25269834 25269971 -117001473 + L1ME LINE L1 5322 5467 -2341 254 217 0 0 chr9 25270056 25270102 -117001342 + L1ME LINE L1 5616 5661 -460 21 71 0 0 chr9 25270135 25270177 -117001267 + AT_rich Low_complexity Low_complexity 1 42 0 1821 162 10 0 chr9 25270695 25271003 -117000441 + AluJb SINE Alu 1 311 -1 502 194 48 48 chr9 25271026 25271150 -117000294 + Tigger3(Golem) DNA MER2_type 1 124 -2905 413 248 293 0 chr9 25271998 25272131 -116999313 + MER5A DNA MER1_type 12 183 -6 398 358 59 5 chr9 25272216 25272420 -116999024 + MIR SINE MIR 21 235 -27 2399 71 7 13 chr9 25272867 25273176 -116998268 - AluY SINE Alu -3 308 2 282 319 127 30 chr9 25273454 25273620 -116997824 + MIR SINE MIR 23 204 -58 229 273 11 0 chr9 25273801 25273889 -116997555 + (TA)n Simple_repeat Simple_repeat 2 90 0 229 337 81 6 chr9 25274008 25274180 -116997264 + L2 LINE L2 2369 2553 -761 863 233 78 0 chr9 25274538 25274744 -116996700 + MER58A DNA MER1_type 3 224 0 718 94 0 0 chr9 25274773 25274894 -116996550 + AluSp/q SINE Alu 188 308 0 1153 267 99 19 chr9 25274988 25275453 -116995991 + MLT1D LTR MaLR 1 502 -3 474 179 0 0 chr9 25275886 25275981 -116995463 + GA-rich Low_complexity Low_complexity 2 96 0 2142 99 7 0 chr9 25276518 25276800 -116994644 + AluSc SINE Alu 1 284 -25 883 267 104 59 chr9 25277192 25277913 -116993531 + L2 LINE L2 2531 3296 -17 443 314 103 5 chr9 25278061 25278255 -116993189 - L2 LINE L2 0 3313 3101 641 260 115 67 chr9 25278943 25279255 -116992189 + MLT1I LTR MaLR 81 407 -2 21 36 0 0 chr9 25279548 25279576 -116991868 + AT_rich Low_complexity Low_complexity 1 28 0 219 324 0 54 chr9 25281460 25281534 -116989910 - L2 LINE L2 -66 3206 3137 2473 155 8 37 chr9 25281608 25282092 -116989352 + L1MB7 LINE L1 5709 6178 -6 189 288 0 51 chr9 25282906 25282965 -116988479 + L2 LINE L2 3201 3256 -16 644 332 59 56 chr9 25283148 25283540 -116987904 + L2 LINE L2 2878 3270 -2 1548 207 3 7 chr9 25284202 25284492 -116986952 + AluSx SINE Alu 1 289 -23 1778 174 7 3 chr9 25284501 25284805 -116986639 + AluJo SINE Alu 1 305 -7 4348 135 41 36 chr9 25285080 25286461 -116984983 + pTR5 LTR ERV1 741 2438 0 1762 181 10 0 chr9 25286590 25286894 -116984550 + AluSx SINE Alu 4 310 -2 21 0 0 0 chr9 25287359 25287380 -116984064 + AT_rich Low_complexity Low_complexity 1 21 0 196 238 109 50 chr9 25287581 25287682 -116983762 + MIR SINE MIR 38 144 -64 392 254 8 25 chr9 25288071 25288193 -116983251 - MER103 DNA DNA -21 145 26 449 326 83 31 chr9 25288552 25288797 -116982647 + L1MB7 LINE L1 3996 4227 -1919 2048 123 28 0 chr9 25288797 25289081 -116982363 - AluSg SINE Alu -18 292 1 449 326 83 31 chr9 25289081 25290173 -116981271 + L1MB7 LINE L1 4227 5403 -743 1650 170 64 19 chr9 25290216 25290575 -116980869 - THE1C LTR MaLR 0 375 1 430 318 90 26 chr9 25290857 25291244 -116980200 + HAL1 LINE L1 1371 1782 -725 39 0 0 0 chr9 25291670 25291709 -116979735 + AT_rich Low_complexity Low_complexity 1 39 0 5580 247 59 35 chr9 25292060 25292250 -116979194 + L1MEc LINE L1 789 973 -5242 2266 108 0 6 chr9 25292250 25292565 -116978879 + AluSq SINE Alu 1 313 0 5580 247 59 35 chr9 25292565 25295272 -116976172 + L1MEc LINE L1 973 3686 -2529 1396 163 42 0 chr9 25295791 25296031 -116975413 - Tigger3(Golem) DNA MER2_type 0 3035 2786 6697 238 59 46 chr9 25296614 25298970 -116972474 + L1M4b LINE L1 19 2523 -4615 270 81 0 0 chr9 25298970 25299007 -116972437 + (CA)n Simple_repeat Simple_repeat 2 38 0 6697 238 59 46 chr9 25299007 25299211 -116972233 + L1M4b LINE L1 2523 2723 -4415 399 306 24 44 chr9 25299202 25299450 -116971994 + L1MEc LINE L1 1729 1971 -4425 * 5395 148 71 45 chr9 25299658 25300803 -116970641 - Ricksha_a DNA DNA -7 1174 1 6954 228 63 20 chr9 25300820 25302747 -116968697 + L1MEc LINE L1 2221 4440 -1775 2352 73 3 16 chr9 25302747 25303060 -116968384 + AluY SINE Alu 1 309 -2 6954 228 63 20 chr9 25303060 25303528 -116967916 + L1MEc LINE L1 4440 4886 -1329 3160 192 62 7 chr9 25303533 25304211 -116967233 + L1MB7 LINE L1 5470 6184 0 533 231 176 33 chr9 25307335 25307517 -116963927 - MIR SINE MIR -1 261 54 925 270 68 4 chr9 25308056 25308293 -116963151 + MIR SINE MIR 1 252 -10 182 88 0 29 chr9 25308300 25308334 -116963110 + (CAT)n Simple_repeat Simple_repeat 2 34 0 242 332 25 55 chr9 25308461 25308660 -116962784 + L2 LINE L2 2545 2737 -577 225 274 0 32 chr9 25308894 25308956 -116962488 - MIR SINE MIR -62 146 87 351 264 132 40 chr9 25309077 25309251 -116962193 - MIR SINE MIR 0 262 73 519 17 0 0 chr9 25310032 25310087 -116961357 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 519 17 0 0 chr9 25310087 25310147 -116961297 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 376 346 30 0 chr9 25311221 25311354 -116960090 - L2 LINE L2 -3 3269 3133 1851 79 4 20 chr9 25311547 25311800 -116959644 - AluSp SINE Alu 0 313 65 1504 230 55 93 chr9 25312192 25312434 -116959010 - MLT1E2 LTR MaLR -1 625 375 2619 41 0 13 chr9 25312434 25312749 -116958695 + AluY SINE Alu 1 311 0 1504 230 55 93 chr9 25312749 25313119 -116958325 - MLT1E2 LTR MaLR -251 375 59 278 299 62 7 chr9 25313280 25313424 -116958020 - L1ME4a LINE L1 -14 6107 5956 236 254 127 35 chr9 25313521 25313694 -116957750 - L1ME4a LINE L1 -306 5815 5627 973 270 96 12 chr9 25313914 25314258 -116957186 + MLT1I LTR MaLR 1 373 -36 1904 214 46 32 chr9 25314761 25315257 -116956187 - MLT1D LTR MaLR -2 503 1 371 263 114 18 chr9 25316509 25316623 -116954821 + MLT1I LTR MaLR 285 409 0 29 28 0 0 chr9 25316800 25316836 -116954608 + AT_rich Low_complexity Low_complexity 1 36 0 1483 153 12 117 chr9 25317477 25317811 -116953633 - AluJb SINE Alu -1 301 3 219 304 0 8 chr9 25317932 25318004 -116953440 + GA-rich Low_complexity Low_complexity 3 124 0 21 36 0 0 chr9 25318487 25318515 -116952929 + AT_rich Low_complexity Low_complexity 1 28 0 245 271 112 28 chr9 25319035 25319201 -116952243 + MIR SINE MIR 44 219 -43 462 223 214 0 chr9 25319523 25319635 -116951809 - MER5A DNA MER1_type 0 189 54 426 316 169 32 chr9 25320873 25321221 -116950223 - L2 LINE L2 -47 3266 2871 21 71 0 0 chr9 25321449 25321491 -116949953 + AT_rich Low_complexity Low_complexity 1 42 0 1975 117 70 9 chr9 25321514 25321856 -116949588 - L1PA13 LINE L1 -7 6156 5794 22 56 0 0 chr9 25322633 25322669 -116948775 + AT_rich Low_complexity Low_complexity 1 36 0 360 238 66 41 chr9 25323507 25323629 -116947815 - L2 LINE L2 -2 3311 3187 2054 100 0 10 chr9 25323630 25323966 -116947478 + AluSg SINE Alu 5 310 0 828 307 114 35 chr9 25324011 25324588 -116946856 - L2 LINE L2 -1 3312 2690 299 339 73 0 chr9 25325112 25325236 -116946208 + L2 LINE L2 3165 3297 -16 267 31 0 0 chr9 25326597 25326629 -116944815 + (CA)n Simple_repeat Simple_repeat 2 33 0 244 313 134 8 chr9 25326833 25326967 -116944477 - MIR SINE MIR -71 191 41 362 286 139 58 chr9 25327120 25327480 -116943964 + MLT1J LTR MaLR 99 487 -24 23 54 0 0 chr9 25327545 25327582 -116943862 + AT_rich Low_complexity Low_complexity 1 37 0 504 299 85 19 chr9 25329151 25329362 -116942082 + MIR SINE MIR 28 252 -10 186 217 43 0 chr9 25331195 25331241 -116940203 + L2 LINE L2 3266 3313 0 2065 187 98 0 chr9 25331267 25331673 -116939771 - MER74C LTR ERVL -2 458 13 2409 68 0 3 chr9 25331673 25331969 -116939475 - AluY SINE Alu -16 295 1 1966 157 50 66 chr9 25332119 25332558 -116938886 + MSTB1 LTR MaLR 1 432 0 22 0 0 0 chr9 25332586 25332608 -116938836 + AT_rich Low_complexity Low_complexity 1 22 0 1486 201 65 100 chr9 25332863 25333384 -116938060 + MLT1D LTR MaLR 1 503 -2 27 49 0 0 chr9 25334682 25334723 -116936721 + AT_rich Low_complexity Low_complexity 1 41 0 2623 245 115 15 chr9 25335058 25335833 -116935611 - L1ME LINE L1 -395 5838 5141 210 37 0 0 chr9 25335833 25335860 -116935584 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2623 245 115 15 chr9 25335860 25335961 -116935483 - L1ME LINE L1 -1092 5141 5051 2100 122 138 5 chr9 25335961 25336339 -116935105 - MSTA LTR MaLR 0 428 1 2623 245 115 15 chr9 25336339 25337340 -116934104 - L1ME LINE L1 -1182 5051 3772 713 110 45 0 chr9 25337489 25337643 -116933801 + (TA)n Simple_repeat Simple_repeat 1 161 0 318 202 11 64 chr9 25337643 25337737 -116933707 - L1MC4 LINE L1 -1338 6704 6616 478 157 41 0 chr9 25337737 25337858 -116933586 + (TA)n Simple_repeat Simple_repeat 1 126 0 393 75 0 0 chr9 25337895 25337948 -116933496 + (TA)n Simple_repeat Simple_repeat 1 53 0 2110 104 16 50 chr9 25337948 25338265 -116933179 - AluSc SINE Alu -3 306 1 23 86 0 0 chr9 25338274 25338332 -116933112 + AT_rich Low_complexity Low_complexity 1 58 0 388 261 13 25 chr9 25338467 25338624 -116932820 + MER105 DNA DNA 1 155 -49 582 246 17 90 chr9 25338673 25338837 -116932607 - L1ME LINE L1 -2913 3302 3128 494 230 88 18 chr9 25338837 25338950 -116932494 - FLAM_A SINE Alu -11 122 2 582 246 17 90 chr9 25338950 25339187 -116932257 - L1ME LINE L1 -3087 3128 2930 539 178 0 10 chr9 25339188 25339289 -116932155 + AluJo SINE Alu 119 218 -94 4791 163 36 29 chr9 25339418 25340337 -116931107 - L1MA9 LINE L1 0 6312 5401 2399 68 102 0 chr9 25340337 25340659 -116930785 + THE1A LTR MaLR 1 355 0 11406 96 16 2 chr9 25340659 25342217 -116929227 + THE1A-int LTR MaLR 1 1580 0 2720 85 3 0 chr9 25342217 25342571 -116928873 + THE1A LTR MaLR 1 355 0 4791 163 36 29 chr9 25342571 25342972 -116928472 - L1MA9 LINE L1 -910 5402 4973 244 282 13 0 chr9 25343013 25343091 -116928353 - L1ME LINE L1 -6211 185 107 188 306 10 15 chr9 25343305 25343372 -116928072 + L2 LINE L2 3188 3295 -18 362 339 54 63 chr9 25343466 25343487 -116927957 - MIR SINE MIR -6 256 236 612 250 111 43 chr9 25343487 25343528 -116927916 + MER58A DNA MER1_type 3 40 -2380 2250 70 0 23 chr9 25343528 25343861 -116927583 - AluY SINE Alu 0 311 1 612 250 111 43 chr9 25343861 25344027 -116927417 + MER58A DNA MER1_type 40 224 0 362 339 54 63 chr9 25344027 25344244 -116927200 - MIR SINE MIR -26 236 20 225 171 29 14 chr9 25344486 25344556 -116926888 + (TA)n Simple_repeat Simple_repeat 2 72 0 224 299 69 23 chr9 25346802 25346889 -116924555 + MIR SINE MIR 55 145 -63 199 313 0 0 chr9 25346946 25346994 -116924450 + L2 LINE L2 3251 3298 -15 217 356 144 28 chr9 25347110 25347290 -116924154 + L3 LINE CR1 1244 1444 -133 455 263 46 20 chr9 25347339 25347491 -116923953 + MIR SINE MIR 31 186 -76 725 271 12 134 chr9 25348161 25348640 -116922804 - L2 LINE L2 -1 3312 2892 246 292 37 35 chr9 25349363 25349509 -116921935 + MIR SINE MIR 32 174 -66 222 337 94 48 chr9 25350194 25350630 -116920814 - L2 LINE L2 -814 2500 2045 238 254 34 17 chr9 25351097 25351156 -116920288 - L2 LINE L2 -12 3260 3201 2410 119 5 22 chr9 25351528 25351897 -116919547 + THE1B LTR MaLR 1 363 -1 7466 68 3 8 chr9 25352299 25354073 -116917371 + L1PA6 LINE L1 4390 6154 0 688 247 111 14 chr9 25354229 25354607 -116916837 + L1ME3A LINE L1 5739 6160 -2 369 277 35 64 chr9 25355176 25355317 -116916127 + MIR SINE MIR 13 149 -113 733 216 25 0 chr9 25355418 25355580 -116915864 - MER97a DNA MER1_type? -715 179 14 2091 162 12 3 chr9 25356309 25356643 -116914801 + MER1B DNA MER1_type 1 337 0 222 37 0 0 chr9 25356783 25356810 -116914634 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 24 0 0 0 chr9 25357080 25357104 -116914340 + AT_rich Low_complexity Low_complexity 1 24 0 826 300 16 4 chr9 25357172 25357419 -116914025 + MIR SINE MIR 8 257 -5 396 353 53 35 chr9 25357720 25358097 -116913347 + L2 LINE L2 2360 2743 -571 281 287 0 43 chr9 25358477 25358571 -116912873 + L2 LINE L2 2994 3083 -189 504 301 38 16 chr9 25358891 25359074 -116912370 - MIR SINE MIR -74 188 2 422 305 85 37 chr9 25359239 25359403 -116912041 + L3b LINE CR1 1388 1559 -24 433 294 64 46 chr9 25360112 25360318 -116911126 - MIR SINE MIR -55 207 2 666 267 71 29 chr9 25360468 25360708 -116910736 - MIR SINE MIR -5 257 8 789 221 33 6 chr9 25360723 25360904 -116910540 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr9 25361933 25361955 -116909489 + AT_rich Low_complexity Low_complexity 1 22 0 359 262 30 83 chr9 25362120 25362288 -116909156 - MIR SINE MIR -5 257 99 1066 271 191 26 chr9 25362300 25362798 -116908646 + MLT1G1 LTR MaLR 15 594 -1 236 269 87 39 chr9 25362952 25363056 -116908388 - L2 LINE L2 -5 3267 3159 211 225 0 0 chr9 25363306 25363346 -116908098 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 459 0 0 0 chr9 25363427 25363478 -116907966 + (CA)n Simple_repeat Simple_repeat 1 51 0 1488 197 25 11 chr9 25363556 25363673 -116907771 + AluJo SINE Alu 1 115 -190 234 0 0 0 chr9 25363673 25363699 -116907745 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1488 197 25 11 chr9 25363699 25363882 -116907562 + AluJo SINE Alu 115 305 0 787 240 95 117 chr9 25364020 25364605 -116906839 + L1MDa LINE L1 123 649 -5894 2573 57 0 13 chr9 25364605 25364919 -116906525 - AluY SINE Alu -1 310 1 787 240 95 117 chr9 25364919 25365539 -116905905 + L1MDa LINE L1 649 1281 -5262 270 342 45 9 chr9 25366219 25366330 -116905114 + MIR SINE MIR 35 149 -113 556 41 0 0 chr9 25367332 25367405 -116904039 + L1PA8 LINE L1 6095 6167 -5 223 323 40 50 chr9 25367574 25367673 -116903771 + MIR SINE MIR 20 117 -91 234 211 18 35 chr9 25368076 25368133 -116903311 + MIR SINE MIR 37 92 -170 486 244 43 37 chr9 25368582 25368746 -116902698 - MIR SINE MIR 0 262 98 1473 122 20 0 chr9 25369090 25369344 -116902100 - L1MA5 LINE L1 -4 6296 6038 484 230 43 50 chr9 25369366 25369505 -116901939 - MIR SINE MIR -27 235 98 293 310 0 0 chr9 25370331 25370402 -116901042 - L2 LINE L2 -22 3250 3180 273 260 96 123 chr9 25374193 25374282 -116897162 - MIR SINE MIR -45 217 127 2198 92 0 0 chr9 25374282 25374603 -116896841 + AluY SINE Alu 1 321 0 273 260 96 123 chr9 25374603 25374730 -116896714 - MIR SINE MIR -135 127 5 22 0 0 0 chr9 25375704 25375726 -116895718 + AT_rich Low_complexity Low_complexity 1 22 0 289 339 16 16 chr9 25376659 25376783 -116894661 - MLT2E LTR ERVL -473 155 32 2281 108 7 0 chr9 25377529 25377836 -116893608 + AluSc SINE Alu 1 309 0 2524 74 0 0 chr9 25377899 25378208 -116893236 + AluY SINE Alu 1 309 -2 1926 120 72 3 chr9 25378477 25378769 -116892675 + AluSx SINE Alu 1 312 0 560 304 151 31 chr9 25379194 25379621 -116891823 + L2 LINE L2 2743 3238 -75 1607 256 67 20 chr9 25379707 25380156 -116891288 - L2 LINE L2 -6 3307 2838 1381 199 29 60 chr9 25380167 25380483 -116890961 + AluJo SINE Alu 7 312 0 660 147 0 53 chr9 25380487 25380677 -116890767 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4451 40 0 0 chr9 25380677 25381255 -116890189 - L1PA4 LINE L1 -795 5351 4774 6717 34 2 0 chr9 25381255 25382055 -116889389 + L1PA4 LINE L1 5353 6155 0 372 306 50 54 chr9 25382095 25382317 -116889127 - L2 LINE L2 -368 2946 2726 297 290 56 9 chr9 25382691 25382798 -116888646 - MIR3 SINE MIR -2 206 95 313 283 69 56 chr9 25383937 25384170 -116887274 + MARNA DNA Mariner 334 569 -17 275 373 63 0 chr9 25384228 25384386 -116887058 + MIR SINE MIR 72 239 -23 251 357 0 19 chr9 25385192 25385316 -116886128 - MIR SINE MIR -67 141 21 540 291 114 17 chr9 25385720 25385957 -116885487 - MIR SINE MIR 0 262 3 224 252 134 39 chr9 25387098 25387225 -116884219 + MER5A DNA MER1_type 21 159 -30 583 237 22 0 chr9 25387377 25387512 -116883932 + MIR SINE MIR 69 206 -56 829 218 42 26 chr9 25387519 25387712 -116883732 + MER20 DNA MER1_type 1 196 -23 543 297 42 6 chr9 25387758 25387923 -116883521 + MIR SINE MIR 48 218 -44 188 227 67 40 chr9 25389587 25389662 -116881782 - MIR SINE MIR -76 186 110 939 186 6 33 chr9 25389806 25389989 -116881455 + MER5B DNA MER1_type 1 178 0 347 314 101 60 chr9 25390047 25390458 -116880986 + L2 LINE L2 2818 3249 -23 3223 126 20 39 chr9 25390458 25391000 -116880444 + L1MB4 LINE L1 5648 6179 -1 347 314 101 60 chr9 25391000 25391025 -116880419 + L2 LINE L2 3249 3272 0 * 494 321 77 18 chr9 25391024 25391338 -116880106 + L2 LINE L2 2753 3092 -221 299 235 0 15 chr9 25391351 25391419 -116880025 - MLT1J2 LTR MaLR 0 450 384 615 231 39 0 chr9 25391419 25391549 -116879895 - MER5A DNA MER1_type -8 181 47 1524 174 40 82 chr9 25391549 25391608 -116879836 + MLT1A1 LTR MaLR 1 61 -304 2490 137 28 14 chr9 25391608 25391967 -116879477 - THE1B LTR MaLR 0 364 1 1524 174 40 82 chr9 25391967 25392287 -116879157 + MLT1A1 LTR MaLR 61 364 -1 332 128 0 0 chr9 25392287 25392334 -116879110 - MER5A DNA MER1_type -137 52 6 990 269 97 38 chr9 25392334 25392706 -116878738 - MLT1J2 LTR MaLR -50 400 7 599 232 39 77 chr9 25392716 25392923 -116878521 + L2 LINE L2 3115 3313 0 461 376 41 5 chr9 25393888 25394106 -116877338 - MIR SINE MIR -6 256 31 281 333 44 0 chr9 25394136 25394226 -116877218 - L2 LINE L2 -1 3271 3178 232 274 48 0 chr9 25394302 25394364 -116877080 - L2 LINE L2 -219 3053 2989 462 229 16 16 chr9 25395358 25395480 -116875964 + MLT1J2 LTR MaLR 20 141 -309 197 368 104 10 chr9 25396006 25396077 -116875367 + L2 LINE L2 2767 2830 -484 949 53 76 30 chr9 25396077 25396208 -116875236 + MER85 DNA T2_type 1 137 -2 197 368 104 10 chr9 25396208 25396329 -116875115 + L2 LINE L2 2830 2977 -337 2236 112 7 0 chr9 25396441 25396744 -116874700 - AluSq SINE Alu -8 305 1 22 36 0 55 chr9 25397508 25397542 -116873902 + AT_rich Low_complexity Low_complexity 1 32 -20 2252 99 0 0 chr9 25397542 25397826 -116873618 - AluSg SINE Alu -26 284 1 22 36 0 55 chr9 25397826 25397846 -116873598 + AT_rich Low_complexity Low_complexity 32 52 0 565 263 74 21 chr9 25397999 25398189 -116873255 + MIR SINE MIR 53 252 -10 342 223 32 21 chr9 25399909 25400003 -116871441 - MIR SINE MIR -105 157 63 365 336 146 0 chr9 25400396 25400622 -116870822 + MIR SINE MIR 4 262 0 507 283 7 21 chr9 25401343 25401488 -116869956 + MIR SINE MIR 49 191 -71 21 0 0 0 chr9 25401552 25401573 -116869871 + AT_rich Low_complexity Low_complexity 1 21 0 679 291 37 8 chr9 25402572 25402813 -116868631 + MIR SINE MIR 4 251 -11 213 256 135 60 chr9 25404193 25404326 -116867118 + L2 LINE L2 2937 3079 -193 278 217 65 33 chr9 25404462 25404911 -116866533 + MER88 LTR ERVL 79 173 -291 1412 252 78 38 chr9 25404474 25404522 -116866922 - MER74B LTR ERVL -74 548 503 2300 123 42 25 chr9 25404522 25404880 -116866564 + THE1B LTR MaLR 1 364 0 1412 252 78 38 chr9 25404880 25405308 -116866136 - MER74B LTR ERVL -119 503 53 361 259 48 95 chr9 25405506 25405695 -116865749 - MIR SINE MIR -75 187 8 255 295 0 0 chr9 25405730 25405791 -116865653 + L2 LINE L2 3211 3271 -1 1687 164 0 0 chr9 25405928 25406190 -116865254 + AluJo SINE Alu 18 279 -33 2074 139 128 8 chr9 25406192 25406560 -116864884 - MSTA LTR MaLR -16 412 1 550 293 27 59 chr9 25406621 25406732 -116864712 - MIR SINE MIR -3 259 146 459 0 0 0 chr9 25406732 25406783 -116864661 + (TA)n Simple_repeat Simple_repeat 2 52 0 550 293 27 59 chr9 25406783 25406927 -116864517 - MIR SINE MIR -116 146 12 271 244 47 23 chr9 25408876 25408962 -116862482 + MIR3 SINE MIR 110 197 -11 23 0 0 0 chr9 25409535 25409558 -116861886 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 25410225 25410250 -116861194 + AT_rich Low_complexity Low_complexity 1 25 0 2036 99 0 41 chr9 25410315 25410609 -116860835 + AluSc SINE Alu 1 282 -27 202 161 0 0 chr9 25411238 25411269 -116860175 + MIR SINE MIR 33 63 -145 308 242 112 56 chr9 25412185 25412400 -116859044 - L1ME4a LINE L1 -1 6120 5894 425 281 204 43 chr9 25413015 25413452 -116857992 - MLT1J LTR MaLR -4 507 1 22 0 0 0 chr9 25413807 25413829 -116857615 + AT_rich Low_complexity Low_complexity 1 22 0 626 319 43 64 chr9 25413886 25414231 -116857213 - L3 LINE CR1 -103 1474 1137 338 323 165 28 chr9 25414347 25414632 -116856812 - L3 LINE CR1 -776 801 478 183 341 47 0 chr9 25414798 25414883 -116856561 - MIR SINE MIR -13 249 161 2292 229 142 34 chr9 25415017 25415063 -116856381 - MER21B LTR ERV1 -124 739 699 2811 192 80 62 chr9 25415063 25415772 -116855672 + MER72 LTR ERV1 1 722 0 2292 229 142 34 chr9 25415772 25416381 -116855063 - MER21B LTR ERV1 -164 699 13 2315 98 0 31 chr9 25417139 25417457 -116853987 + AluSq SINE Alu 1 308 -5 239 263 109 29 chr9 25417494 25417631 -116853813 - MIR SINE MIR -12 250 103 252 247 12 49 chr9 25417750 25417831 -116853613 + GA-rich Low_complexity Low_complexity 5 82 0 215 261 61 61 chr9 25417977 25418092 -116853352 - L2 LINE L2 -2 3311 3197 260 331 93 26 chr9 25419269 25419420 -116852024 - L2 LINE L2 -5 3267 3107 727 247 35 11 chr9 25419710 25419884 -116851560 + MIR SINE MIR 72 249 -13 266 250 46 56 chr9 25421113 25421221 -116850223 - MIR SINE MIR -34 228 122 210 348 152 5 chr9 25421738 25421922 -116849522 - MIR SINE MIR -40 222 12 1537 156 43 112 chr9 25422014 25422406 -116849038 + MLT1A1 LTR MaLR 1 365 0 360 0 0 0 chr9 25422443 25422483 -116848961 + (TA)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr9 25423611 25423631 -116847813 + (GA)n Simple_repeat Simple_repeat 2 21 0 993 185 62 120 chr9 25426170 25426538 -116844906 + MLT1A1 LTR MaLR 19 365 0 183 311 204 0 chr9 25426654 25426786 -116844658 - MIR SINE MIR -4 258 100 464 279 71 49 chr9 25426874 25427100 -116844344 + MIR SINE MIR 18 248 -14 21 0 0 0 chr9 25427461 25427482 -116843962 + AT_rich Low_complexity Low_complexity 1 21 0 2319 164 71 23 chr9 25428080 25428556 -116842888 - L1MC2 LINE L1 -9 6335 5837 266 223 36 161 chr9 25428826 25428938 -116842506 - L2 LINE L2 -6 3266 3169 237 65 0 0 chr9 25430120 25430151 -116841293 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 211 0 0 chr9 25430882 25430939 -116840505 + (TAG)n Simple_repeat Simple_repeat 3 59 0 238 346 29 19 chr9 25431033 25431137 -116840307 - MIR SINE MIR -67 141 37 246 293 71 29 chr9 25431400 25431540 -116839904 - MIR SINE MIR -5 257 112 767 272 155 13 chr9 25431564 25431880 -116839564 - L2 LINE L2 0 3313 2953 254 398 49 0 chr9 25431882 25432005 -116839439 - L2 LINE L2 -17 3255 3127 380 205 0 13 chr9 25432082 25432160 -116839284 + MER96B DNA MER1_type? 159 235 -182 262 241 24 24 chr9 25432441 25432524 -116838920 + MER103 DNA DNA 2 84 -82 231 265 72 12 chr9 25432651 25432734 -116838710 + L1MC4 LINE L1 6615 6702 -1340 * 287 244 0 0 chr9 25432708 25432786 -116838658 - L1MC4 LINE L1 -1340 6702 6625 467 271 106 35 chr9 25432792 25432962 -116838482 - MIR SINE MIR -73 189 8 427 289 176 5 chr9 25434405 25434592 -116836852 + MIR SINE MIR 44 262 0 690 286 75 0 chr9 25435894 25436107 -116835337 + MIR SINE MIR 31 259 -3 667 241 18 6 chr9 25436359 25436525 -116834919 - MLT1D LTR MaLR 0 505 338 678 251 67 0 chr9 25436534 25436729 -116834715 - MER3 DNA MER1_type -1 208 1 2336 118 0 3 chr9 25437171 25437484 -116833960 - AluSx SINE Alu 0 312 1 2214 149 0 3 chr9 25437870 25438219 -116833225 + MER7A DNA MER2_type 1 346 0 551 193 226 6 chr9 25438429 25438610 -116832834 - MIR SINE MIR 0 262 42 323 301 11 0 chr9 25438851 25438944 -116832500 + MIR SINE MIR 67 160 -102 1965 175 131 0 chr9 25438969 25439382 -116832062 + MLT2B2 LTR ERVL 1 357 -40 203 161 0 0 chr9 25439382 25439413 -116832031 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 318 266 83 28 chr9 25440043 25440152 -116831292 - MLT1A1 LTR MaLR -72 302 188 309 68 0 0 chr9 25440165 25440209 -116831235 + (CA)n Simple_repeat Simple_repeat 2 45 0 354 61 0 0 chr9 25440210 25440259 -116831185 + (GA)n Simple_repeat Simple_repeat 1 49 0 705 170 50 7 chr9 25440284 25440425 -116831019 - MLT1A1 LTR MaLR -218 147 1 220 309 59 52 chr9 25440661 25440797 -116830647 + L2 LINE L2 2849 2985 -328 349 130 0 0 chr9 25440925 25440979 -116830465 - L2 LINE L2 -35 3278 3225 404 269 94 25 chr9 25442079 25442239 -116829205 - MLT1J2 LTR MaLR 0 450 280 486 321 61 6 chr9 25442625 25442790 -116828654 + MIR SINE MIR 18 191 -71 1443 211 44 6 chr9 25442801 25443161 -116828283 - MER89 LTR ERV1 -10 549 176 207 0 0 0 chr9 25443966 25443989 -116827455 + (TG)n Simple_repeat Simple_repeat 2 24 0 189 249 118 124 chr9 25444070 25444239 -116827205 + L3 LINE CR1 1052 1219 -358 1667 207 52 86 chr9 25445116 25445158 -116826286 - MLT2B1 LTR ERVL 0 520 478 309 26 0 0 chr9 25445158 25445196 -116826248 + (TG)n Simple_repeat Simple_repeat 2 39 0 1667 207 52 86 chr9 25445196 25445689 -116825755 - MLT2B1 LTR ERVL -42 478 3 459 281 54 60 chr9 25446062 25446229 -116825215 + MIR SINE MIR 2 167 -95 1936 253 21 32 chr9 25447337 25447410 -116824034 + L1ME1 LINE L1 5398 5470 -696 252 0 0 0 chr9 25447410 25447438 -116824006 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1936 253 21 32 chr9 25447438 25447543 -116823901 + L1ME1 LINE L1 5470 5575 -591 1955 142 0 28 chr9 25447543 25447856 -116823588 + AluSx SINE Alu 2 306 0 1936 253 21 32 chr9 25447856 25448335 -116823109 + L1ME1 LINE L1 5575 6050 -116 449 135 34 11 chr9 25448329 25448418 -116823026 + L1ME LINE L1 5695 5785 -377 * 258 281 44 0 chr9 25448426 25448540 -116822904 + L1MA10 LINE L1 6190 6308 -26 246 192 0 0 chr9 25448607 25448659 -116822785 + (TA)n Simple_repeat Simple_repeat 2 53 0 651 263 153 46 chr9 25448752 25449125 -116822319 + MLT1K LTR MaLR 151 563 -25 539 250 107 0 chr9 25449390 25449558 -116821886 + MIR SINE MIR 73 258 -4 1293 213 45 79 chr9 25449801 25450188 -116821256 - MER63B DNA MER1_type -635 427 55 1896 145 7 3 chr9 25450188 25450477 -116820967 - AluSx SINE Alu -22 290 1 1293 213 45 79 chr9 25450477 25450531 -116820913 - MER63B DNA MER1_type -1007 55 1 571 310 42 64 chr9 25450912 25451225 -116820219 + L3 LINE CR1 1164 1469 -108 316 326 69 87 chr9 25451494 25451883 -116819561 - L2 LINE L2 0 3272 2891 582 250 132 45 chr9 25452130 25452350 -116819094 + L2 LINE L2 2836 3074 -239 523 335 59 28 chr9 25452623 25452945 -116818499 + L3 LINE CR1 1146 1477 -100 635 275 42 10 chr9 25452992 25453185 -116818259 - MIR SINE MIR -3 259 61 248 275 22 22 chr9 25453435 25453526 -116817918 + L2 LINE L2 3161 3251 -62 757 280 67 84 chr9 25455167 25455631 -116815813 - LTR16C LTR ERVL 0 491 36 292 237 52 37 chr9 25456572 25456707 -116814737 + Charlie8 DNA MER1_type 369 505 -1912 24 91 0 0 chr9 25456774 25456840 -116814604 + AT_rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr9 25456969 25457002 -116814442 + AT_rich Low_complexity Low_complexity 1 33 0 209 56 0 83 chr9 25458188 25458224 -116813220 + L3 LINE CR1 1523 1555 -22 307 325 36 36 chr9 25458439 25458605 -116812839 + L3b LINE CR1 1157 1322 -261 6867 63 7 0 chr9 25459547 25460661 -116810783 + L1PA7 LINE L1 5016 6136 -18 450 0 0 0 chr9 25460662 25460712 -116810732 + (TA)n Simple_repeat Simple_repeat 1 50 0 255 233 139 58 chr9 25461340 25461426 -116810018 - L2 LINE L2 0 3272 3180 348 24 0 0 chr9 25461913 25461954 -116809490 + (CA)n Simple_repeat Simple_repeat 1 41 0 270 0 0 0 chr9 25461986 25462016 -116809428 + (CA)n Simple_repeat Simple_repeat 2 31 0 553 241 42 12 chr9 25462910 25463076 -116808368 - Charlie8 DNA MER1_type -2153 264 94 370 299 198 16 chr9 25463902 25464089 -116807355 - L2 LINE L2 0 3313 3093 315 244 16 94 chr9 25464278 25464405 -116807039 + MIR SINE MIR 103 219 -43 677 184 24 8 chr9 25464665 25464790 -116806654 - FLAM_A SINE Alu -6 127 1 22 0 0 0 chr9 25466159 25466181 -116805263 + AT_rich Low_complexity Low_complexity 1 22 0 519 263 40 73 chr9 25466733 25467007 -116804437 + L2 LINE L2 3048 3312 -1 225 0 0 0 chr9 25467175 25467200 -116804244 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 2309 100 0 3 chr9 25469164 25469474 -116801970 - AluSg SINE Alu 0 310 2 1381 167 41 56 chr9 25469755 25470024 -116801420 + AluJb SINE Alu 1 265 -47 403 286 83 83 chr9 25470451 25470691 -116800753 - L2 LINE L2 -1 3271 3032 1011 191 11 21 chr9 25470691 25470880 -116800564 - MER5A DNA MER1_type -2 187 1 425 200 17 113 chr9 25470912 25471027 -116800417 + MER5A DNA MER1_type 9 112 -77 612 226 126 6 chr9 25471064 25471223 -116800221 - MER5B DNA MER1_type 0 178 1 452 261 82 23 chr9 25472358 25472510 -116798934 - MIR SINE MIR -65 143 7 1633 102 19 8 chr9 25472885 25473149 -116798295 + MER39 LTR ERV1 441 707 0 1490 104 59 0 chr9 25473198 25473400 -116798044 - AluSc SINE Alu -11 298 85 524 328 64 60 chr9 25473509 25473975 -116797469 + L2 LINE L2 2805 3272 0 836 241 69 4 chr9 25474440 25474714 -116796730 + L1MC4 LINE L1 7107 7398 -644 1489 214 123 12 chr9 25474754 25475175 -116796269 - MLT1F LTR MaLR 0 542 75 2174 175 8 56 chr9 25475178 25475658 -116795786 - LTR9 LTR ERV1 0 612 156 4852 194 56 31 chr9 25477377 25478648 -116792796 - L1 LINE L1 -1993 4153 2852 1475 182 30 61 chr9 25479556 25479853 -116791591 - AluJo SINE Alu -24 288 1 894 287 42 12 chr9 25480207 25480611 -116790833 + L1MC1 LINE L1 5401 5816 -1992 487 263 6 29 chr9 25481297 25481472 -116789972 - MER5B DNA MER1_type -4 174 4 2327 160 18 61 chr9 25481784 25482229 -116789215 + MSTB LTR MaLR 1 426 0 322 150 150 18 chr9 25482836 25482949 -116788495 + Charlie4 DNA MER1_type 1740 1867 -94 1236 138 0 11 chr9 25483049 25483227 -116788217 + AluSg/x SINE Alu 122 299 -13 1936 149 9 0 chr9 25483227 25483550 -116787894 + L1MC1 LINE L1 6005 6330 -3 28 48 0 0 chr9 25483768 25483810 -116787634 + AT_rich Low_complexity Low_complexity 1 42 0 211 298 137 16 chr9 25483847 25483971 -116787473 - L2 LINE L2 -225 3047 2909 1577 162 16 13 chr9 25484615 25484929 -116786515 - L1MA4 LINE L1 -7 6293 5979 470 292 107 6 chr9 25485338 25485516 -116785928 - MIR SINE MIR -31 231 36 754 234 152 32 chr9 25485704 25486207 -116785237 - LTR50 LTR ERVL -19 776 1 288 211 40 26 chr9 25486731 25486788 -116784656 + AluJ/FRAM SINE Alu 224 284 -18 288 0 0 0 chr9 25486788 25486820 -116784624 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 288 211 40 26 chr9 25486820 25486838 -116784606 + AluJ/FRAM SINE Alu 284 300 -2 331 345 63 5 chr9 25487221 25487427 -116784017 + L2 LINE L2 2685 2902 -412 213 254 48 0 chr9 25487754 25487817 -116783627 + L2 LINE L2 3202 3267 -5 1725 159 0 41 chr9 25488292 25488630 -116782814 + AluSx SINE Alu 1 326 0 725 258 123 19 chr9 25489505 25489815 -116781629 + MLT1J2 LTR MaLR 85 426 -24 180 0 0 0 chr9 25490054 25490074 -116781370 + (TA)n Simple_repeat Simple_repeat 2 21 0 307 333 90 19 chr9 25490141 25490297 -116781147 - MIR SINE MIR -94 168 2 1203 195 45 7 chr9 25491863 25492150 -116779294 - MER33 DNA MER1_type 0 324 27 364 123 35 0 chr9 25493001 25493058 -116778386 + MER41D LTR ERV1 499 557 0 2363 150 60 29 chr9 25493058 25493388 -116778056 - L1MA9 LINE L1 -164 6148 5830 351 0 0 0 chr9 25493388 25493427 -116778017 + (TG)n Simple_repeat Simple_repeat 2 40 0 290 96 0 19 chr9 25493428 25493480 -116777964 + (TA)n Simple_repeat Simple_repeat 1 51 0 2363 150 60 29 chr9 25493480 25493599 -116777845 - L1MA9 LINE L1 -481 5831 5683 690 259 48 41 chr9 25495687 25495957 -116775487 + L1ME3A LINE L1 5842 6113 -57 355 293 101 25 chr9 25496524 25496722 -116774722 + MIR SINE MIR 36 248 -14 1189 137 71 0 chr9 25496744 25496864 -116774580 + AluJo SINE Alu 1 140 -172 195 42 0 0 chr9 25496864 25496888 -116774556 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1189 137 71 0 chr9 25496888 25496950 -116774494 + AluJo SINE Alu 140 196 -116 773 181 201 44 chr9 25497943 25498002 -116773442 - L1MC4a LINE L1 -1849 5959 5911 1857 164 3 28 chr9 25498002 25498320 -116773124 - AluSx SINE Alu -2 310 1 773 181 201 44 chr9 25498320 25498509 -116772935 - L1MC4a LINE L1 -1897 5911 5672 2523 80 0 0 chr9 25498523 25498825 -116772619 - AluY SINE Alu -8 303 2 1198 230 72 43 chr9 25498977 25499122 -116772322 - LTR2 LTR ERV1 -84 365 226 186 43 0 0 chr9 25499122 25499145 -116772299 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 1198 230 72 43 chr9 25499145 25499347 -116772097 - LTR2 LTR ERV1 -223 226 8 1091 156 0 0 chr9 25499347 25499507 -116771937 - AluSx SINE Alu -118 194 35 481 271 251 53 chr9 25499507 25499806 -116771638 + MLT1F1 LTR MaLR 124 506 -61 3705 84 18 6 chr9 25499811 25500321 -116771123 + MER4E LTR ERV1 1 516 -250 4378 149 12 26 chr9 25500771 25501511 -116769933 + L1MB3 LINE L1 5452 6181 -2 2039 208 26 38 chr9 25501965 25502224 -116769220 + L1MC3 LINE L1 6609 6861 -924 1956 117 3 69 chr9 25502224 25502557 -116768887 + AluSx SINE Alu 1 311 -1 2039 208 26 38 chr9 25502557 25502792 -116768652 + L1MC3 LINE L1 6861 7097 -688 245 328 43 0 chr9 25502792 25502908 -116768536 + MLT1F1 LTR MaLR 35 155 -412 2032 161 18 29 chr9 25502909 25503253 -116768191 + L1MC3 LINE L1 7240 7581 -204 2258 113 3 0 chr9 25503253 25503555 -116767889 + AluSx SINE Alu 1 303 -9 2032 161 18 29 chr9 25503555 25503594 -116767850 + L1MC3 LINE L1 7581 7619 -166 266 212 106 44 chr9 25504244 25504357 -116767087 - L2 LINE L2 -1 3312 3193 2080 134 0 0 chr9 25504590 25504881 -116766563 + AluSx SINE Alu 1 291 -21 495 123 0 203 chr9 25504897 25505035 -116766409 + L1MB3 LINE L1 5677 5786 -385 258 176 0 0 chr9 25505042 25505093 -116766351 + (TA)n Simple_repeat Simple_repeat 1 51 0 254 130 43 0 chr9 25505096 25505142 -116766302 - L1M2 LINE L1 -507 5793 5746 202 150 25 0 chr9 25505152 25505192 -116766252 + (TA)n Simple_repeat Simple_repeat 1 41 0 1315 147 4 37 chr9 25505193 25505438 -116766006 + L1MB3 LINE L1 5776 6012 -171 323 318 47 27 chr9 25505584 25505732 -116765712 + L1MEc LINE L1 2024 2174 -4222 297 164 0 41 chr9 25505738 25505811 -116765633 + L1MC3 LINE L1 7716 7785 0 * 1828 237 83 8 chr9 25505805 25506415 -116765029 + L1MEc LINE L1 2170 2776 -3439 994 219 4 82 chr9 25506420 25506653 -116764791 - MER58C DNA MER1_type 0 215 1 1396 225 66 12 chr9 25506666 25507088 -116764356 + L1MEc LINE L1 3325 3769 -2446 7493 93 5 0 chr9 25507202 25508185 -116763259 - HERVK14 LTR ERVK -4957 988 1 3804 103 16 51 chr9 25508185 25508798 -116762646 - LTR14B LTR ERVK 0 608 17 436 275 23 88 chr9 25508819 25509081 -116762363 - MER21B LTR ERV1 -611 252 8 492 225 108 25 chr9 25509440 25509560 -116761884 - MSTC LTR MaLR -298 130 1 1225 220 112 1 chr9 25511623 25511971 -116759473 - MLT1F1 LTR MaLR -147 395 1 711 331 37 37 chr9 25513982 25514332 -116757112 + MLT1I LTR MaLR 58 407 -2 22 70 0 0 chr9 25514670 25514713 -116756731 + AT_rich Low_complexity Low_complexity 1 43 0 821 121 24 116 chr9 25514724 25514931 -116756513 - L1MA7 LINE L1 0 6291 6104 583 281 105 32 chr9 25515324 25515738 -116755706 + MLT1H LTR MaLR 77 555 0 736 214 191 58 chr9 25516239 25516584 -116754860 + MLT1J1 LTR MaLR 2 413 -37 274 295 0 13 chr9 25517163 25517241 -116754203 + MIR SINE MIR 69 145 -117 499 257 59 0 chr9 25517258 25517394 -116754050 - MER5A DNA MER1_type 0 189 46 1717 181 16 87 chr9 25517398 25517447 -116753997 - MLT2D LTR ERVL -9 405 354 324 48 0 0 chr9 25517447 25517489 -116753955 + (TG)n Simple_repeat Simple_repeat 2 43 0 1717 181 16 87 chr9 25517489 25517875 -116753569 - MLT2D LTR ERVL -60 354 1 548 107 27 0 chr9 25518025 25518100 -116753344 - AluSq SINE Alu -18 295 219 996 63 0 120 chr9 25518103 25518261 -116753183 - AluSq SINE Alu -174 139 1 260 224 40 13 chr9 25519847 25519923 -116751521 + L1ME4a LINE L1 6044 6121 0 414 0 0 0 chr9 25520350 25520396 -116751048 + (CA)n Simple_repeat Simple_repeat 2 47 0 1661 218 86 45 chr9 25520396 25520852 -116750592 + MLT1D LTR MaLR 28 505 0 1361 149 20 64 chr9 25521926 25521983 -116749461 + AluJo SINE Alu 60 118 -194 2295 45 0 45 chr9 25521983 25522275 -116749169 - AluY SINE Alu -23 288 10 1361 149 20 64 chr9 25522275 25522466 -116748978 + AluJo SINE Alu 118 297 -15 768 254 127 19 chr9 25522547 25522815 -116748629 + MLT1J2 LTR MaLR 1 297 -153 4908 183 72 13 chr9 25524048 25525593 -116745851 - L1MC2 LINE L1 0 6344 4721 273 71 89 89 chr9 25525935 25525991 -116745453 + MLT1I LTR MaLR 342 397 -12 845 228 71 14 chr9 25526767 25526978 -116744466 + MER58A DNA MER1_type 2 224 0 440 176 56 120 chr9 25527156 25527298 -116744146 + L1ME3A LINE L1 6027 6159 -11 1231 187 28 5 chr9 25527622 25527836 -116743608 + MER20 DNA MER1_type 1 219 0 276 252 63 36 chr9 25527841 25527969 -116743475 + MER5A DNA MER1_type 2 120 -58 533 292 87 70 chr9 25528351 25528824 -116742620 - L2 LINE L2 -14 3299 2819 194 289 22 44 chr9 25528856 25528946 -116742498 + MIR SINE MIR 2 89 -173 2178 112 0 20 chr9 25528948 25529253 -116742191 + AluSx SINE Alu 1 299 -13 506 162 55 60 chr9 25529319 25529501 -116741943 + MER58 DNA MER1_type 28 2412 -8 1810 144 42 0 chr9 25531877 25532161 -116739283 - MER58B DNA MER1_type 0 341 46 1624 196 35 127 chr9 25532587 25532733 -116738711 + MLT2B1 LTR ERVL 1 159 -361 1507 193 216 34 chr9 25532733 25533173 -116738271 - MLT2B1 LTR ERVL 0 520 1 1624 196 35 127 chr9 25533173 25533591 -116737853 + MLT2B1 LTR ERVL 159 513 -7 435 255 173 41 chr9 25533638 25533979 -116737465 + L2 LINE L2 2928 3313 0 261 0 0 0 chr9 25536267 25536296 -116735148 + (A)n Simple_repeat Simple_repeat 1 29 0 307 276 67 9 chr9 25536296 25536401 -116735043 + MER103 DNA DNA 1 111 -55 828 158 0 66 chr9 25537723 25537875 -116733569 + FRAM SINE Alu 4 145 -31 198 0 0 0 chr9 25537875 25537897 -116733547 + (T)n Simple_repeat Simple_repeat 1 22 0 558 339 41 9 chr9 25538419 25538640 -116732804 - MIR SINE MIR -1 261 34 259 355 37 71 chr9 25539341 25539693 -116731751 + L2 LINE L2 2812 3151 -121 1242 180 28 0 chr9 25541288 25541505 -116729939 + MER58A DNA MER1_type 2 224 0 842 97 0 8 chr9 25542339 25542463 -116728981 + MER107 DNA MER1_type 1 123 -74 306 36 0 55 chr9 25542611 25542666 -116728778 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 1372 97 57 48 chr9 25542694 25542922 -116728522 + MER30 DNA MER1_type 1 230 0 379 236 47 39 chr9 25543158 25543285 -116728159 + MIR SINE MIR 119 246 -16 405 335 88 21 chr9 25544874 25545113 -116726331 - MIR SINE MIR -6 256 2 264 285 15 66 chr9 25546641 25546778 -116724666 + MIR3 SINE MIR 1 130 -78 206 294 193 46 chr9 25546966 25547075 -116724369 + MIR SINE MIR 22 146 -116 1510 211 65 34 chr9 25548382 25548714 -116722730 + MSTD LTR MaLR 1 348 -48 3258 107 62 2 chr9 25548714 25549211 -116722233 + L1PA10 LINE L1 5642 6168 0 1510 211 65 34 chr9 25549211 25549262 -116722182 + MSTD LTR MaLR 348 396 0 356 213 86 72 chr9 25549362 25549483 -116721961 + MER5A DNA MER1_type 52 189 0 347 309 115 18 chr9 25549497 25549662 -116721782 - MER5A DNA MER1_type -6 183 3 306 107 0 0 chr9 25550938 25550994 -116720450 + (CA)n Simple_repeat Simple_repeat 2 57 0 208 119 48 0 chr9 25551274 25551316 -116720128 + A-rich Low_complexity Low_complexity 2 45 0 448 336 111 10 chr9 25551716 25551924 -116719520 + MIR SINE MIR 2 230 -32 346 261 96 21 chr9 25552093 25552244 -116719200 + MER5A DNA MER1_type 8 187 -2 239 194 69 28 chr9 25553520 25553592 -116717852 + MIR SINE MIR 132 206 -56 1909 103 46 28 chr9 25556177 25556287 -116715157 + AluSg SINE Alu 11 118 -192 213 65 0 0 chr9 25556287 25556318 -116715126 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1909 103 46 28 chr9 25556318 25556489 -116714955 + AluSg SINE Alu 118 297 -13 282 278 119 26 chr9 25557050 25557201 -116714243 + MIR3 SINE MIR 20 184 -24 216 0 0 0 chr9 25558466 25558490 -116712954 + (A)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 25560737 25560757 -116710687 + (A)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr9 25562148 25562190 -116709254 + AT_rich Low_complexity Low_complexity 1 42 0 27 49 0 0 chr9 25562361 25562402 -116709042 + AT_rich Low_complexity Low_complexity 1 41 0 304 330 55 0 chr9 25565621 25565712 -116705732 - MIR SINE MIR -139 123 28 239 320 0 48 chr9 25565758 25565861 -116705583 - MIR3 SINE MIR -6 202 105 230 125 21 0 chr9 25566589 25566637 -116704807 + (TG)n Simple_repeat Simple_repeat 1 49 0 1480 132 24 4 chr9 25567247 25567498 -116703946 - Tigger3(Golem) DNA MER2_type -2 3027 2772 538 165 134 16 chr9 25567495 25567622 -116703822 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 2350 78 3 10 chr9 25568209 25568516 -116702928 - AluY SINE Alu -6 305 1 54 40 0 0 chr9 25568649 25568724 -116702720 + AT_rich Low_complexity Low_complexity 1 75 0 285 265 85 45 chr9 25568903 25569126 -116702318 + Charlie7 DNA MER1_type 358 589 -2023 369 0 0 0 chr9 25571559 25571600 -116699844 + (T)n Simple_repeat Simple_repeat 1 41 0 717 213 91 25 chr9 25572274 25572471 -116698973 + MER58C DNA MER1_type 2 211 -4 959 213 38 5 chr9 25572693 25572904 -116698540 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr9 25574023 25574044 -116697400 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr9 25574698 25574728 -116696716 + (A)n Simple_repeat Simple_repeat 1 30 0 528 238 41 8 chr9 25574794 25574916 -116696528 - MER5A DNA MER1_type -63 126 1 2129 119 3 22 chr9 25575667 25575978 -116695466 - AluSp SINE Alu -8 305 1 1646 158 134 3 chr9 25577309 25577607 -116693837 - MER1B DNA MER1_type 0 337 1 415 306 46 9 chr9 25578020 25578128 -116693316 + L2 LINE L2 3156 3267 -5 517 282 78 13 chr9 25580013 25580239 -116691205 - MIR SINE MIR -19 243 3 2143 93 17 0 chr9 25580394 25580684 -116690760 - AluSx SINE Alu -17 295 1 376 324 56 21 chr9 25583847 25583989 -116687455 - MIR3 SINE MIR -17 191 45 312 344 123 7 chr9 25585606 25585760 -116685684 + MIR SINE MIR 19 190 -72 380 286 98 0 chr9 25585862 25585974 -116685470 - MIR SINE MIR -8 254 132 2166 64 46 4 chr9 25586913 25587194 -116684250 - AluY SINE Alu -18 293 1 2014 34 0 0 chr9 25587824 25588061 -116683383 + L1PA5 LINE L1 5905 6141 -13 264 313 62 42 chr9 25589471 25589615 -116681829 + L2 LINE L2 3118 3264 -8 22 0 0 0 chr9 25591543 25591565 -116679879 + AT_rich Low_complexity Low_complexity 1 22 0 2180 112 0 7 chr9 25591570 25591873 -116679571 - AluSq SINE Alu -12 301 1 1808 136 31 21 chr9 25591926 25592213 -116679231 - AluSg SINE Alu -20 290 1 268 305 45 51 chr9 25592546 25592723 -116678721 + MER5A DNA MER1_type 1 176 -13 2064 128 111 20 chr9 25593365 25593763 -116677681 + Tigger2a DNA MER2_type 1 434 0 328 22 0 0 chr9 25594823 25594869 -116676575 - L1P LINE L1 -849 5306 5261 3733 35 15 4 chr9 25594869 25595326 -116676118 + L1PA3 LINE L1 5693 6155 0 266 317 55 33 chr9 25599293 25599476 -116671968 + MER5A DNA MER1_type 3 189 0 503 257 95 14 chr9 25601742 25601890 -116669554 + MER117 DNA MER1_type 1 160 -37 1289 235 50 0 chr9 25602152 25602454 -116668990 + MER58B DNA MER1_type 10 326 -15 374 220 45 98 chr9 25604456 25604588 -116666856 + MIR SINE MIR 53 177 -85 257 170 38 19 chr9 25604873 25604926 -116666518 - MER5B DNA MER1_type 0 178 125 189 213 0 0 chr9 25604989 25605036 -116666408 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 385 243 0 0 chr9 25605036 25605110 -116666334 - FLAM SINE Alu -17 116 43 259 227 80 34 chr9 25605110 25605198 -116666246 - MER5B DNA MER1_type -86 92 1 211 295 72 78 chr9 25606057 25606250 -116665194 - MIR SINE MIR -58 204 13 198 0 0 0 chr9 25606852 25606874 -116664570 + (A)n Simple_repeat Simple_repeat 1 22 0 1882 145 0 14 chr9 25607028 25607325 -116664119 - AluSx SINE Alu -19 293 1 25 51 0 0 chr9 25607769 25607808 -116663636 + AT_rich Low_complexity Low_complexity 1 39 0 329 308 164 21 chr9 25608078 25608364 -116663080 - L2 LINE L2 -34 3279 2953 267 284 93 76 chr9 25608658 25608894 -116662550 + L2 LINE L2 2937 3176 -96 420 239 71 49 chr9 25612011 25612195 -116659249 - MIR SINE MIR -57 205 18 1304 273 77 14 chr9 25613256 25613700 -116657744 + LTR38 LTR ERV1 85 556 0 188 283 43 0 chr9 25616106 25616152 -116655292 - L3b LINE CR1 -165 1418 1371 186 71 0 0 chr9 25616498 25616526 -116654918 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1564 191 24 14 chr9 25616674 25616968 -116654476 + AluJo SINE Alu 1 297 -15 421 131 47 131 chr9 25618808 25618915 -116652529 - Tigger7 DNA MER2_type 0 2487 2390 1186 190 59 16 chr9 25618919 25619172 -116652272 - Tigger7 DNA MER2_type -2221 266 3 22 0 0 0 chr9 25619656 25619678 -116651766 + AT_rich Low_complexity Low_complexity 1 22 0 1499 144 29 18 chr9 25620631 25620908 -116650536 + L1MB4 LINE L1 5900 6179 -1 2079 116 38 0 chr9 25624209 25624501 -116646943 - AluSx SINE Alu -9 303 1 592 243 34 84 chr9 25626143 25626192 -116645252 + MER34 LTR ERV1 1 51 -491 1872 155 0 31 chr9 25626192 25626509 -116644935 - AluSx SINE Alu -5 307 1 592 243 34 84 chr9 25626509 25626755 -116644689 + MER34 LTR ERV1 51 281 -261 22 0 0 0 chr9 25627964 25627986 -116643458 + AT_rich Low_complexity Low_complexity 1 22 0 327 261 43 26 chr9 25628610 25628725 -116642719 - MER5A DNA MER1_type -65 124 8 403 327 30 74 chr9 25629086 25629288 -116642156 + MIR3 SINE MIR 8 200 -8 330 297 76 14 chr9 25630474 25630619 -116640825 + MER103 DNA DNA 2 155 -11 3561 176 42 9 chr9 25630695 25631434 -116640010 + L1MA6 LINE L1 5529 6291 -9 403 91 27 45 chr9 25631434 25631544 -116639900 + (TA)n Simple_repeat Simple_repeat 1 108 0 211 235 224 12 chr9 25632749 25632834 -116638610 - MIR SINE MIR -62 146 44 21 36 0 0 chr9 25637127 25637155 -116634289 + AT_rich Low_complexity Low_complexity 1 28 0 1887 122 32 4 chr9 25639245 25639524 -116631920 + AluSx SINE Alu 1 287 -25 196 53 53 0 chr9 25640935 25640973 -116630471 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 188 281 122 76 chr9 25641785 25642088 -116629356 - L2 LINE L2 0 3313 2997 1665 199 66 49 chr9 25642096 25642584 -116628860 + MLT1D LTR MaLR 1 496 -9 640 264 254 0 chr9 25642597 25642963 -116628481 - L2 LINE L2 -323 2990 2526 198 91 0 0 chr9 25643163 25643196 -116628248 + (TA)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chr9 25644281 25644304 -116627140 + (A)n Simple_repeat Simple_repeat 1 23 0 2323 86 0 10 chr9 25645676 25645989 -116625455 + AluY SINE Alu 1 310 -1 298 174 0 0 chr9 25647021 25647067 -116624377 + Alu SINE Alu 4 49 -251 309 151 0 0 chr9 25647072 25647125 -116624319 + Alu SINE Alu 239 291 -11 183 222 253 20 chr9 25647134 25647233 -116624211 - MIR SINE MIR -93 169 48 290 250 31 21 chr9 25648263 25648359 -116623085 - L2 LINE L2 -16 3256 3160 207 0 0 0 chr9 25648486 25648509 -116622935 + (A)n Simple_repeat Simple_repeat 1 23 0 495 0 0 0 chr9 25651726 25651781 -116619663 + (A)n Simple_repeat Simple_repeat 1 55 0 1926 146 19 29 chr9 25653251 25653428 -116618016 - AluJb SINE Alu 0 312 138 2200 73 30 13 chr9 25653428 25653730 -116617714 - AluY SINE Alu -4 307 1 1926 146 19 29 chr9 25653730 25653867 -116617577 - AluJb SINE Alu -174 138 1 1251 116 8 139 chr9 25654078 25654345 -116617099 + AluSg/x SINE Alu 80 311 -1 231 315 99 77 chr9 25655648 25655659 -116615785 - L2 LINE L2 -40 3232 3223 2331 62 0 16 chr9 25655659 25655963 -116615481 + AluY SINE Alu 1 299 -12 231 315 99 77 chr9 25655963 25656173 -116615271 - L2 LINE L2 -49 3223 3006 260 315 142 16 chr9 25656379 25656506 -116614938 - MIR3 SINE MIR -32 176 34 201 195 0 0 chr9 25658528 25658569 -116612875 + A-rich Low_complexity Low_complexity 1 41 0 249 279 115 96 chr9 25658921 25659009 -116612435 - MIR SINE MIR -31 231 146 1971 97 104 0 chr9 25659009 25659278 -116612166 - AluSq SINE Alu -16 297 1 249 279 115 96 chr9 25659278 25659397 -116612047 - MIR SINE MIR -116 146 20 462 248 18 0 chr9 25659439 25659548 -116611896 + MER5B DNA MER1_type 68 178 0 225 329 12 0 chr9 25660052 25660134 -116611310 + MIR SINE MIR 113 195 -67 1996 181 110 27 chr9 25660160 25660755 -116610689 - Tigger7 DNA MER2_type -34 2553 1 271 230 149 0 chr9 25663143 25663217 -116608227 + MLT1B LTR MaLR 7 91 -299 330 118 0 0 chr9 25663233 25663284 -116608160 + MER47A DNA MER2_type 73 123 -243 1217 185 38 58 chr9 25663316 25663640 -116607804 + MLT1B LTR MaLR 83 390 0 1950 150 22 27 chr9 25663728 25664095 -116607349 + MER47A DNA MER2_type 1 365 -1 1534 195 0 25 chr9 25664507 25664825 -116606619 - AluJo SINE Alu -2 310 1 2132 116 3 7 chr9 25667012 25667315 -116604129 + AluSx SINE Alu 5 306 -6 182 247 82 55 chr9 25668774 25668847 -116602597 + MIR SINE MIR 69 143 -119 2292 110 3 3 chr9 25669395 25669705 -116601739 + AluSp SINE Alu 4 313 0 790 183 52 70 chr9 25670077 25670290 -116601154 + MIR SINE MIR 30 238 -24 259 227 165 10 chr9 25671093 25671190 -116600254 - MIR SINE MIR -61 147 36 228 372 61 7 chr9 25674042 25674190 -116597254 - MIR3 SINE MIR -17 191 36 926 199 206 27 chr9 25674353 25674786 -116596658 + Charlie1b DNA MER1_type 1 523 0 675 99 0 0 chr9 25675904 25676026 -116595418 - AluSg/x SINE Alu 0 316 195 318 283 184 9 chr9 25676246 25676458 -116594986 - L1MC/D LINE L1 -2024 5784 5536 184 311 67 83 chr9 25676491 25676684 -116594760 + MIR3 SINE MIR 9 198 -10 1380 200 0 8 chr9 25678100 25678350 -116593094 + AluJo SINE Alu 1 248 -64 372 344 63 11 chr9 25679987 25680176 -116591268 + L2 LINE L2 3114 3312 -1 182 57 0 86 chr9 25681524 25681559 -116589885 - L3 LINE CR1 -813 764 733 31 0 0 0 chr9 25682145 25682176 -116589268 + AT_rich Low_complexity Low_complexity 1 31 0 341 198 170 19 chr9 25682410 25682516 -116588928 + MIR SINE MIR 20 141 -67 261 0 0 0 chr9 25688064 25688093 -116583351 + (A)n Simple_repeat Simple_repeat 1 29 0 1826 192 66 6 chr9 25688319 25688684 -116582760 + MER47B DNA MER2_type 1 387 -31 468 153 0 12 chr9 25690056 25690141 -116581303 - MER45A DNA AcHobo 0 178 95 186 43 0 0 chr9 25693443 25693466 -116577978 + (CGG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr9 25693503 25693526 -116577918 + (CCGCG)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr9 25693657 25693684 -116577760 + GC_rich Low_complexity Low_complexity 1 27 0 212 86 29 0 chr9 25696953 25696988 -116574456 + (CCCCAG)n Simple_repeat Simple_repeat 4 39 0 216 0 0 0 chr9 25702348 25702372 -116569072 + (CA)n Simple_repeat Simple_repeat 2 25 0 280 255 11 21 chr9 25703025 25703119 -116568325 + CT-rich Low_complexity Low_complexity 2 94 0 23 0 0 0 chr9 25705253 25705276 -116566168 + AT_rich Low_complexity Low_complexity 1 23 0 521 319 105 4 chr9 25706085 25706323 -116565121 + MIR SINE MIR 1 262 0 237 139 0 0 chr9 25708393 25708436 -116563008 + (TG)n Simple_repeat Simple_repeat 1 43 0 183 394 19 0 chr9 25708495 25708599 -116562845 - L2 LINE L2 -427 2887 2782 246 333 20 20 chr9 25709052 25709154 -116562290 + MIR3 SINE MIR 4 105 -103 746 253 160 0 chr9 25709200 25709394 -116562050 - MIR SINE MIR -27 235 11 314 253 72 0 chr9 25709785 25709868 -116561576 + L1ME4a LINE L1 5788 5876 -245 357 254 42 49 chr9 25709886 25710028 -116561416 + L1ME4a LINE L1 5978 6118 -3 674 271 108 5 chr9 25711782 25711996 -116559448 + MIR SINE MIR 15 250 -12 388 324 28 45 chr9 25712019 25712195 -116559249 - MER5B DNA MER1_type 0 178 6 306 370 82 7 chr9 25715963 25716109 -116555335 + L2 LINE L2 3111 3267 -5 279 290 184 68 chr9 25718664 25718871 -116552573 + MIR SINE MIR 30 260 -2 24 0 0 0 chr9 25719614 25719638 -116551806 + AT_rich Low_complexity Low_complexity 1 24 0 222 208 0 0 chr9 25721965 25722013 -116549431 + (CCA)n Simple_repeat Simple_repeat 2 49 0 607 80 10 10 chr9 25722468 25722568 -116548876 + (TC)n Simple_repeat Simple_repeat 2 101 0 204 40 0 0 chr9 25722587 25722612 -116548832 + (CA)n Simple_repeat Simple_repeat 1 25 0 2190 88 7 10 chr9 25724194 25724490 -116546954 - AluY SINE Alu -16 295 1 24 77 0 0 chr9 25724709 25724761 -116546683 + AT_rich Low_complexity Low_complexity 1 52 0 252 305 113 13 chr9 25726191 25726342 -116545102 + MIR SINE MIR 63 228 -34 424 273 32 123 chr9 25726453 25726522 -116544922 + MLT1L LTR MaLR 108 182 -433 2053 141 0 3 chr9 25726522 25726819 -116544625 + AluSx SINE Alu 1 296 -16 424 273 32 123 chr9 25726819 25727157 -116544287 + MLT1L LTR MaLR 182 582 -33 686 244 0 32 chr9 25727642 25727798 -116543646 - FRAM SINE Alu -19 157 7 542 314 44 13 chr9 25728380 25728606 -116542838 + MIR SINE MIR 29 261 -1 258 254 45 15 chr9 25729158 25729225 -116542219 + MIR3 SINE MIR 89 157 -51 939 182 223 20 chr9 25729618 25729865 -116541579 - AluJb SINE Alu -5 297 1 848 187 43 32 chr9 25729923 25730110 -116541334 + MER5A DNA MER1_type 1 189 0 997 268 32 22 chr9 25730134 25730516 -116540928 + MLT1H LTR MaLR 56 505 -44 220 300 0 0 chr9 25730859 25730909 -116540535 - MIR SINE MIR -127 81 32 2408 74 0 0 chr9 25731167 25731466 -116539978 + AluY SINE Alu 1 299 -12 29678 110 11 55 chr9 25732356 25738798 -116532646 - L1PA7 LINE L1 0 6154 12 1478 216 89 45 chr9 25738983 25739455 -116531989 - MLT1D LTR MaLR -12 493 1 262 200 47 47 chr9 25740198 25740283 -116531161 - HAL1b LINE L1 -1 1347 1263 991 230 121 32 chr9 25740336 25740775 -116530669 - HAL1b LINE L1 -262 1086 609 246 317 19 19 chr9 25740911 25741015 -116530429 - HAL1b LINE L1 -849 499 396 12783 186 37 14 chr9 25741415 25745646 -116525798 + L1PB2 LINE L1 2539 6867 0 512 212 89 22 chr9 25745780 25745959 -116525485 - L1MB8 LINE L1 -41 6137 5947 275 173 0 0 chr9 25745965 25746017 -116525427 + L1M4 LINE L1 5676 5727 -447 395 326 92 20 chr9 25746237 25746299 -116525145 + MIR SINE MIR 3 59 -203 1800 150 76 20 chr9 25746299 25746653 -116524791 + THE1C LTR MaLR 1 374 -1 395 326 92 20 chr9 25746653 25746786 -116524658 + MIR SINE MIR 59 212 -50 4089 179 35 17 chr9 25746834 25747671 -116523773 - L1MB2 LINE L1 -2 6169 5318 5672 168 68 18 chr9 25747687 25749597 -116521847 - L1PB2 LINE L1 -3 6148 4141 536 247 21 37 chr9 25749602 25749792 -116521652 - L1MB2 LINE L1 -816 5330 5144 546 278 111 61 chr9 25749906 25750330 -116521114 - L1MB8 LINE L1 -2047 5761 5317 26 0 0 0 chr9 25750344 25750370 -116521074 + AT_rich Low_complexity Low_complexity 1 26 0 245 104 0 0 chr9 25750876 25750924 -116520520 - L1MA9 LINE L1 -11 6301 6254 7084 151 7 32 chr9 25750963 25753349 -116518095 - L1MA5A LINE L1 -10 6287 3961 2303 144 8 3 chr9 25753367 25753729 -116517715 - THE1B LTR MaLR 0 364 1 10439 103 32 35 chr9 25753729 25755313 -116516131 - THE1B-int LTR MaLR 0 1580 1 521 96 0 14 chr9 25755313 25755386 -116516058 - THE1B LTR MaLR 0 375 304 1522 266 19 24 chr9 25755405 25755975 -116515469 - L1M1 LINE L1 -4501 1881 1228 2467 217 26 2 chr9 25755975 25756472 -116514972 + MLT2B1 LTR ERVL 12 520 0 256 236 37 60 chr9 25756473 25756605 -116514839 - L1M4c LINE L1 -3980 2754 2627 1650 185 3 23 chr9 25756605 25756907 -116514537 - AluJo SINE Alu -16 296 1 256 236 37 60 chr9 25756907 25756990 -116514454 - L1M4c LINE L1 -4107 2627 2544 811 236 23 110 chr9 25757020 25757166 -116514278 + AluJo SINE Alu 1 107 -205 278 26 26 0 chr9 25757166 25757205 -116514239 + (TA)n Simple_repeat Simple_repeat 2 41 0 811 236 23 110 chr9 25757205 25757367 -116514077 + AluJo SINE Alu 107 282 -30 1914 156 0 0 chr9 25757385 25757667 -116513777 + AluSx SINE Alu 1 282 -30 204 97 0 0 chr9 25757683 25757714 -116513730 + (TA)n Simple_repeat Simple_repeat 2 32 0 2977 273 34 34 chr9 25757764 25758990 -116512454 - L1M4c LINE L1 -4289 2443 1531 2165 180 36 10 chr9 25758990 25759407 -116512037 - MSTA LTR MaLR 0 428 1 2977 273 34 34 chr9 25759407 25760348 -116511096 - L1M4c LINE L1 -5201 1531 591 180 0 0 0 chr9 25760348 25760368 -116511076 + (TC)n Simple_repeat Simple_repeat 1 20 0 390 288 77 38 chr9 25760430 25760990 -116510454 - L1M4 LINE L1 -1432 4714 4133 781 315 55 41 chr9 25761003 25761346 -116510098 + L2 LINE L2 2963 3310 -3 22 35 0 0 chr9 25761532 25761561 -116509883 + AT_rich Low_complexity Low_complexity 1 29 0 808 305 53 40 chr9 25761724 25762098 -116509346 - L1ME3A LINE L1 -14 6156 5778 1763 166 3 3 chr9 25762580 25762870 -116508574 - AluSx SINE Alu -22 290 1 24 32 0 0 chr9 25763666 25763697 -116507747 + AT_rich Low_complexity Low_complexity 1 31 0 1414 160 19 0 chr9 25763723 25763991 -116507453 - L1MA4 LINE L1 -5 6295 6023 2034 115 19 16 chr9 25763998 25764310 -116507134 - AluSq SINE Alu 0 313 1 37 52 0 0 chr9 25764423 25764481 -116506963 + AT_rich Low_complexity Low_complexity 1 58 0 658 120 0 0 chr9 25764704 25764804 -116506640 - AluY SINE Alu -1 310 211 237 308 93 0 chr9 25764872 25764979 -116506465 + HAL1 LINE L1 23 139 -2368 7425 35 2 0 chr9 25765641 25767344 -116504100 - L1PA4 LINE L1 -4 6151 4445 478 298 48 43 chr9 25767451 25767659 -116503785 + MIR SINE MIR 52 260 -2 22 0 0 0 chr9 25768312 25768334 -116503110 + AT_rich Low_complexity Low_complexity 1 22 0 285 214 71 0 chr9 25769516 25769600 -116501844 - L1MC5 LINE L1 -36 7925 7836 2103 82 36 20 chr9 25769823 25770126 -116501318 + AluY SINE Alu 3 310 -1 1894 174 86 8 chr9 25770127 25770489 -116500955 - MER57A LTR ERV1 -13 390 1 2991 197 25 11 chr9 25770489 25771118 -116500326 + LTR48B LTR ERV1 7 644 0 1183 213 79 18 chr9 25771154 25771482 -116499962 - L1ME3A LINE L1 -168 6002 5655 47 82 0 0 chr9 25772068 25772178 -116499266 + AT_rich Low_complexity Low_complexity 1 110 0 287 317 19 19 chr9 25772428 25772532 -116498912 + MIR SINE MIR 47 150 -112 735 171 181 40 chr9 25772620 25772819 -116498625 - AluJo SINE Alu -3 309 83 435 282 28 80 chr9 25772971 25773184 -116498260 - MIR SINE MIR 0 262 61 25 0 0 0 chr9 25773457 25773482 -116497962 + AT_rich Low_complexity Low_complexity 1 25 0 418 211 202 0 chr9 25773959 25774068 -116497376 + FLAM_A SINE Alu 1 131 -2 2485 189 29 81 chr9 25774351 25774934 -116496510 + MLT2B3 LTR ERVL 2 554 0 261 240 194 23 chr9 25775940 25776069 -116495375 + MER5A DNA MER1_type 35 185 -4 1417 182 64 8 chr9 25776261 25776582 -116494862 + MLT2C2 LTR ERVL 3 332 -65 288 175 0 32 chr9 25776580 25776643 -116494801 - AluSp SINE Alu -170 133 73 * 634 94 31 10 chr9 25776646 25776742 -116494702 - AluJo SINE Alu -210 102 5 891 228 64 20 chr9 25777547 25777797 -116493647 + MIR SINE MIR 2 262 0 611 34 91 23 chr9 25778997 25779085 -116492359 - L1PA8 LINE L1 -5 6167 6074 405 39 0 0 chr9 25779194 25779245 -116492199 + MADE1 DNA Mariner 1 51 -29 690 296 27 17 chr9 25779746 25780047 -116491397 - L1M4 LINE L1 -2499 3647 3344 5524 45 9 0 chr9 25780162 25780845 -116490599 - L1PA5 LINE L1 -1412 4734 4046 7224 43 6 1 chr9 25780845 25782273 -116489171 + L1PA5 LINE L1 4708 6139 -15 987 195 0 0 chr9 25782401 25782570 -116488874 + FAM SINE Alu 1 169 -6 344 275 46 9 chr9 25782631 25782740 -116488704 + MER101B LTR ERV1 1 113 -457 1108 267 10 66 chr9 25782907 25783325 -116488119 + LTR51 LTR ERV1 222 830 -93 287 119 48 0 chr9 25783495 25783537 -116487907 + MER21B LTR ERV1 53 96 -767 1100 285 14 109 chr9 25783673 25784453 -116486991 + L1ME LINE L1 6 711 -5359 947 225 71 25 chr9 25784470 25784579 -116486865 + L1ME LINE L1 2102 2205 -3875 1817 164 0 37 chr9 25784579 25784903 -116486541 + AluJb SINE Alu 1 312 0 947 225 71 25 chr9 25784903 25785228 -116486216 + L1ME LINE L1 2205 2556 -3524 4392 118 52 116 chr9 25785228 25786725 -116484719 - pTR5 LTR ERV1 -1 1682 6 1579 246 102 3 chr9 25786729 25787295 -116484149 + L1ME LINE L1 4182 4803 -1277 696 255 60 23 chr9 25787343 25787559 -116483885 - MER58A DNA MER1_type 0 224 1 1461 163 130 4 chr9 25787625 25787902 -116483542 - MER2 DNA MER2_type -31 314 3 4645 96 140 6 chr9 25788027 25788755 -116482689 - LTR12 LTR ERV1 0 826 1 47327 85 3 7 chr9 25788755 25797137 -116474307 - HERV9 LTR ERV1 0 8399 55 4867 68 9 194 chr9 25797165 25798178 -116473266 - LTR12 LTR ERV1 0 826 1 1086 239 59 33 chr9 25798713 25799255 -116472189 + L1ME LINE L1 4802 5366 -730 1927 176 0 3 chr9 25799255 25799556 -116471888 - AluSx SINE Alu -11 301 2 1086 239 59 33 chr9 25799556 25799605 -116471839 + L1ME LINE L1 5366 5412 -684 32 0 0 0 chr9 25799618 25799650 -116471794 + AT_rich Low_complexity Low_complexity 1 32 0 2421 136 0 19 chr9 25799796 25800215 -116471229 - L1MA3 LINE L1 0 6305 5895 729 95 0 0 chr9 25800267 25800372 -116471072 + L1MA2 LINE L1 5770 5874 -430 240 285 90 21 chr9 25801531 25801675 -116469769 + L1ME LINE L1 5320 5473 -2335 596 184 6 78 chr9 25801735 25801914 -116469530 + L1MC4 LINE L1 7869 8034 -8 392 279 154 23 chr9 25802009 25802141 -116469303 + L1ME LINE L1 5466 5579 -542 276 39 39 20 chr9 25802141 25802192 -116469252 + (CATTT)n Simple_repeat Simple_repeat 4 55 0 392 279 154 23 chr9 25802192 25802370 -116469074 + L1ME LINE L1 5579 5824 -297 21 0 0 0 chr9 25802568 25802589 -116468855 + AT_rich Low_complexity Low_complexity 1 21 0 1912 94 11 34 chr9 25802590 25802856 -116468588 - AluSx SINE Alu -17 295 36 23 0 0 0 chr9 25803023 25803046 -116468398 + AT_rich Low_complexity Low_complexity 1 23 0 359 252 9 35 chr9 25803980 25804095 -116467349 - MER94 DNA DNA 0 134 23 638 157 27 68 chr9 25804226 25804373 -116467071 - FRAM SINE Alu -23 153 13 634 188 131 74 chr9 25804527 25804703 -116466741 - AluJb SINE Alu -38 274 89 26 64 0 0 chr9 25805403 25805450 -116465994 + AT_rich Low_complexity Low_complexity 1 47 0 36 23 0 0 chr9 25807077 25807120 -116464324 + AT_rich Low_complexity Low_complexity 1 43 0 11556 27 0 0 chr9 25807727 25809113 -116462331 - L1P LINE L1 -1999 4147 2762 3772 16 9 0 chr9 25809527 25809968 -116461476 + L1PA2 LINE L1 5711 6155 0 241 345 0 24 chr9 25811632 25811716 -116459728 - L3 LINE CR1 -37 1540 1459 2104 161 40 13 chr9 25812713 25813085 -116458359 - MER61D LTR ERV1 -6 495 114 7282 115 72 11 chr9 25813127 25813456 -116457988 - MER61D-int LTR ERV1 0 5217 4910 291 28 0 0 chr9 25813456 25813492 -116457952 + (CAA)n Simple_repeat Simple_repeat 2 37 0 7282 115 72 11 chr9 25813492 25814299 -116457145 - MER61D-int LTR ERV1 -307 4910 4011 10735 100 36 17 chr9 25814299 25814418 -116457026 - MER61D-int LTR ERV1 -1316 3901 3786 2241 118 0 7 chr9 25814418 25814724 -116456720 - AluSx SINE Alu -8 304 1 10735 100 36 17 chr9 25814724 25816273 -116455171 - MER61D-int LTR ERV1 -1431 3786 2201 734 152 62 7 chr9 25816253 25816398 -116455046 - MER61D-int LTR ERV1 -3338 4199 4047 * 3143 185 41 44 chr9 25816389 25817917 -116453527 - MER61D-int LTR ERV1 -3577 2006 183 269 254 53 35 chr9 25817947 25818061 -116453383 - MER61D-int LTR ERV1 -6475 521 406 539 204 44 29 chr9 25818078 25818215 -116453229 - MER61D-int LTR ERV1 -5077 140 2 2158 157 40 38 chr9 25818215 25818610 -116452834 - MER61D LTR ERV1 0 501 106 26 0 0 0 chr9 25818688 25818714 -116452730 + AT_rich Low_complexity Low_complexity 1 26 0 2244 122 0 0 chr9 25819011 25819314 -116452130 - AluSc SINE Alu -6 303 1 22 70 0 0 chr9 25819560 25819603 -116451841 + AT_rich Low_complexity Low_complexity 1 43 0 1982 155 0 0 chr9 25820064 25820368 -116451076 - AluSx SINE Alu -8 304 1 679 297 126 10 chr9 25820609 25820919 -116450525 - L2 LINE L2 0 3313 2968 264 279 59 44 chr9 25820937 25821073 -116450371 - MIR SINE MIR -50 212 75 409 303 59 26 chr9 25821106 25821258 -116450186 + MIR SINE MIR 74 230 -32 1549 175 104 0 chr9 25821285 25821593 -116449851 + MER58B DNA MER1_type 1 340 -1 186 118 0 0 chr9 25821643 25821677 -116449767 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4811 129 9 11 chr9 25821677 25822460 -116448984 - L1MA5A LINE L1 -9 6288 5508 1332 177 5 0 chr9 25822915 25823130 -116448314 - AluJb SINE Alu -12 300 85 394 310 110 32 chr9 25823152 25823635 -116447809 - L1MC/D LINE L1 -2012 5796 5271 22 35 0 0 chr9 25824014 25824043 -116447401 + AT_rich Low_complexity Low_complexity 1 29 0 246 302 63 0 chr9 25824043 25824169 -116447275 - L1ME3A LINE L1 -13 6157 6024 271 312 0 11 chr9 25824280 25824373 -116447071 - L1MC/D LINE L1 -2053 4093 4002 2333 71 0 0 chr9 25825561 25825844 -116445600 - AluY SINE Alu -17 294 12 9699 123 41 8 chr9 25826001 25827518 -116443926 + Tigger1 DNA MER2_type 23 1589 -829 306 101 30 30 chr9 25828736 25828835 -116442609 + (TA)n Simple_repeat Simple_repeat 2 100 0 2375 159 9 16 chr9 25828933 25829372 -116442072 + Tigger1 DNA MER2_type 1577 2012 -406 434 236 137 47 chr9 25829396 25829629 -116441815 - L1MC/D LINE L1 -3093 3053 2800 530 304 108 30 chr9 25829635 25829997 -116441447 - L1MC4a LINE L1 -1960 5848 5459 1598 211 141 65 chr9 25830001 25830583 -116440861 + MLT1E2 LTR MaLR 1 626 0 2012 143 76 15 chr9 25831102 25831445 -116439999 + THE1B LTR MaLR 1 364 0 284 67 67 0 chr9 25831632 25831674 -116439770 - MLT2B2 LTR ERVL 0 515 471 1538 186 48 18 chr9 25831674 25831754 -116439690 - Tigger2 DNA MER2_type 0 2718 2642 2126 130 0 0 chr9 25831754 25832053 -116439391 + AluY SINE Alu 1 299 -12 1538 186 48 18 chr9 25832053 25832306 -116439138 - Tigger2 DNA MER2_type -76 2642 2375 28452 125 16 67 chr9 25832449 25833418 -116438026 - L1P LINE L1 -1075 5071 4055 5312 167 27 30 chr9 25833418 25834492 -116436952 + MER11C LTR ERVK 1 1071 0 28452 125 16 67 chr9 25834492 25838862 -116432582 - L1P LINE L1 -2091 4055 1 2208 119 0 7 chr9 25838882 25839192 -116432252 - AluSg SINE Alu -2 308 1 243 220 55 18 chr9 25839196 25839305 -116432139 - L1P LINE L1 -734 5420 5308 1973 168 35 0 chr9 25839325 25839699 -116431745 - L1PB4 LINE L1 0 6156 5770 1610 174 4 14 chr9 25839750 25840026 -116431418 - AluJo SINE Alu -39 273 1 562 244 42 115 chr9 25840217 25840766 -116430678 - L1MC4a LINE L1 -1156 4990 4482 1511 205 28 9 chr9 25840784 25841111 -116430333 - L1M4 LINE L1 -460 6216 5884 491 162 31 0 chr9 25841114 25841310 -116430134 + (TA)n Simple_repeat Simple_repeat 1 202 0 1128 201 7 44 chr9 25841310 25841603 -116429841 - L1M4 LINE L1 -904 5740 5459 3990 246 42 30 chr9 25841619 25841636 -116429808 - L1M4 LINE L1 -5305 1237 1222 21 0 0 0 chr9 25841636 25841657 -116429787 + AT_rich Low_complexity Low_complexity 1 21 0 3990 246 42 30 chr9 25841657 25842044 -116429400 - L1M4 LINE L1 -5320 1222 841 228 35 0 0 chr9 25842044 25842073 -116429371 + (TG)n Simple_repeat Simple_repeat 2 30 0 3990 246 42 30 chr9 25842073 25842858 -116428586 - L1M4 LINE L1 -5701 841 6 1206 137 0 0 chr9 25843130 25843298 -116428146 + AluSg SINE Alu 4 171 -139 361 283 28 0 chr9 25843304 25843410 -116428034 + MIR SINE MIR 104 212 -50 226 323 85 30 chr9 25844813 25844998 -116426446 - MIR SINE MIR -50 212 18 2152 133 7 0 chr9 25845010 25845319 -116426125 - AluSx SINE Alu -1 311 1 780 261 10 15 chr9 25845799 25845994 -116425450 + LTR33 LTR ERVL 1 194 -327 454 176 157 10 chr9 25846147 25846249 -116425195 + LTR33 LTR ERVL 405 521 0 2279 70 0 3 chr9 25846527 25846845 -116424599 + AluY SINE Alu 1 317 0 3686 209 38 17 chr9 25847267 25848156 -116423288 + L1ME1 LINE L1 5254 6161 -5 430 35 0 0 chr9 25848819 25848877 -116422567 + L1PA2 LINE L1 6098 6155 0 223 304 180 3 chr9 25849497 25849651 -116421793 - MIR SINE MIR -18 244 49 1980 153 3 3 chr9 25850278 25850586 -116420858 - AluJb SINE Alu 0 312 5 207 0 0 0 chr9 25851017 25851040 -116420404 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 458 297 43 7 chr9 25853802 25853940 -116417504 + MIR SINE MIR 20 162 -100 21 0 0 0 chr9 25854667 25854688 -116416756 + AT_rich Low_complexity Low_complexity 1 21 0 4592 146 27 38 chr9 25856286 25857643 -116413801 - L1M1 LINE L1 -653 7068 5732 * 37738 90 10 9 chr9 25857633 25863764 -116407680 - L1PA6 LINE L1 -9 6145 11 19631 171 43 8 chr9 25863767 25867657 -116403787 - L1M1 LINE L1 -1813 5752 2000 369 0 0 0 chr9 25867657 25867698 -116403746 + (TC)n Simple_repeat Simple_repeat 2 42 0 19631 171 43 8 chr9 25867698 25869266 -116402178 - L1M1 LINE L1 -5565 2000 94 182 88 0 29 chr9 25869266 25869300 -116402144 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 19631 171 43 8 chr9 25869300 25869385 -116402059 - L1M1 LINE L1 -7471 94 13 4806 170 37 34 chr9 25869388 25869851 -116401593 + L1MA4 LINE L1 4843 5303 -997 192 40 0 0 chr9 25869851 25869876 -116401568 + (TA)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr9 25869878 25869902 -116401542 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2068 79 0 4 chr9 25869905 25870158 -116401286 - AluSc SINE Alu -44 265 14 4806 170 37 34 chr9 25870158 25871120 -116400324 + L1MA4 LINE L1 5304 6300 0 560 226 95 0 chr9 25871134 25871271 -116400173 - MER3 DNA MER1_type -59 150 1 2594 102 3 6 chr9 25871841 25872204 -116399240 + THE1B LTR MaLR 1 362 -2 2994 108 11 4 chr9 25872451 25872903 -116398541 + L1MA1 LINE L1 5848 6302 0 3541 169 8 8 chr9 25872921 25873169 -116398275 - L1 LINE L1 -1286 4860 4613 2242 114 3 0 chr9 25873169 25873476 -116397968 - AluSp SINE Alu -5 308 1 3541 169 8 8 chr9 25873476 25873953 -116397491 - L1 LINE L1 -1532 4614 4135 389 169 0 0 chr9 25873954 25874025 -116397419 + MER3 DNA MER1_type 139 209 0 294 222 0 0 chr9 25873978 25874032 -116397412 - MER3 DNA MER1_type -115 94 41 * 21 89 0 0 chr9 25874522 25874578 -116396866 + AT_rich Low_complexity Low_complexity 1 56 0 396 0 0 0 chr9 25876017 25876061 -116395383 + (TA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr9 25876062 25876083 -116395361 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr9 25877381 25877408 -116394036 + (CA)n Simple_repeat Simple_repeat 1 27 0 871 176 90 5 chr9 25877567 25877755 -116393689 - MER3 DNA MER1_type 0 209 6 34 24 0 0 chr9 25877792 25877833 -116393611 + AT_rich Low_complexity Low_complexity 1 41 0 1550 185 3 14 chr9 25878073 25878391 -116393053 + AluJb SINE Alu 1 315 0 1627 105 31 0 chr9 25879654 25879911 -116391533 - L1MA1 LINE L1 0 6302 6038 242 353 13 51 chr9 25880535 25880691 -116390753 + L3 LINE CR1 636 785 -792 1360 196 50 13 chr9 25880932 25881249 -116390195 - MER45B DNA AcHobo 0 1040 712 1989 79 0 4 chr9 25881249 25881515 -116389929 + THE1-int LTR MaLR 1 265 -1315 678 262 128 25 chr9 25881920 25882279 -116389165 - L1ME4a LINE L1 -211 5910 5515 1266 181 41 0 chr9 25882680 25882901 -116388543 + AluJb SINE Alu 83 312 0 25 51 0 0 chr9 25883054 25883093 -116388351 + AT_rich Low_complexity Low_complexity 1 39 0 216 97 0 0 chr9 25883866 25883897 -116387547 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr9 25884892 25884915 -116386529 + AT_rich Low_complexity Low_complexity 1 23 0 6456 257 82 35 chr9 25886218 25888473 -116382971 - L1ME1 LINE L1 -8 6953 4805 2190 68 6 71 chr9 25888473 25888795 -116382649 + AluY SINE Alu 1 301 -10 6456 257 82 35 chr9 25888795 25888869 -116382575 - L1ME1 LINE L1 -2156 4805 4736 1978 138 7 3 chr9 25888869 25889174 -116382270 + AluSx SINE Alu 7 312 0 6456 257 82 35 chr9 25889174 25890153 -116381291 - L1ME1 LINE L1 -2225 4736 3804 8839 79 3 0 chr9 25890153 25892113 -116379331 - L1PA6 LINE L1 0 6154 4183 6456 257 82 35 chr9 25892113 25893430 -116378014 - L1ME1 LINE L1 -3157 3804 2550 310 0 67 0 chr9 25893430 25893475 -116377969 + (TATAA)n Simple_repeat Simple_repeat 3 50 0 6456 257 82 35 chr9 25893475 25894002 -116377442 - L1ME1 LINE L1 -4411 2550 2049 2219 108 10 0 chr9 25894002 25894308 -116377136 - AluSp SINE Alu -4 309 1 6456 257 82 35 chr9 25894308 25894817 -116376627 - L1ME1 LINE L1 -4912 2049 821 1789 251 19 2 chr9 25894840 25895266 -116376178 - MLT1C LTR MaLR -1 466 34 1514 174 79 82 chr9 25895279 25895670 -116375774 - MLT1B LTR MaLR 0 390 1 409 303 64 21 chr9 25896378 25896612 -116374832 - L1ME LINE L1 -302 5819 5576 195 402 18 9 chr9 25896801 25896913 -116374531 + MIR3 SINE MIR 47 159 -49 857 339 38 13 chr9 25898288 25898660 -116372784 + LTR16A LTR ERVL 20 400 -50 759 293 31 27 chr9 25898696 25898955 -116372489 - MIR SINE MIR 0 262 3 24 32 0 0 chr9 25899113 25899144 -116372300 + AT_rich Low_complexity Low_complexity 1 31 0 31 26 0 0 chr9 25899614 25899652 -116371792 + AT_rich Low_complexity Low_complexity 1 38 0 234 315 71 39 chr9 25899657 25899784 -116371660 - MIR SINE MIR -40 222 92 2258 128 27 3 chr9 25899815 25900181 -116371263 + THE1C LTR MaLR 1 375 0 359 283 196 38 chr9 25900728 25900912 -116370532 + MIR SINE MIR 2 214 -48 503 359 21 24 chr9 25901003 25901332 -116370112 - L2 LINE L2 -703 2611 2284 23 0 0 0 chr9 25901475 25901498 -116369946 + AT_rich Low_complexity Low_complexity 1 23 0 383 297 34 0 chr9 25901624 25901742 -116369702 - L2 LINE L2 -5 3308 3187 1326 267 84 41 chr9 25901751 25902437 -116369007 + HAL1b LINE L1 267 982 -366 1911 211 44 12 chr9 26002442 26002998 -116268446 + L1M2c LINE L1 1152 1698 -4513 * 2540 143 27 40 chr9 26002985 26003042 -116268402 - L1MA7 LINE L1 -457 5834 5778 207 0 0 0 chr9 26003042 26003065 -116268379 + (TA)n Simple_repeat Simple_repeat 1 23 0 2540 143 27 40 chr9 26003065 26003488 -116267956 - L1MA7 LINE L1 -513 5778 5360 1089 175 21 3 chr9 26003491 26003824 -116267620 + L1MA7 LINE L1 5836 6280 -11 2944 253 50 33 chr9 26003849 26005510 -116265934 + L1M4c LINE L1 1459 3160 -3222 56 29 0 0 chr9 26005512 26005582 -116265862 + AT_rich Low_complexity Low_complexity 1 70 0 403 341 89 11 chr9 26005636 26005815 -116265629 + MIR SINE MIR 13 205 -57 249 163 0 0 chr9 26006040 26006089 -116265355 + GA-rich Low_complexity Low_complexity 2 50 0 196 313 133 8 chr9 26006262 26006390 -116265054 + L2 LINE L2 2916 3059 -254 2235 112 3 0 chr9 26006433 26006738 -116264706 - AluSx SINE Alu -6 306 1 711 133 13 164 chr9 26006754 26006784 -116264660 + L1MA9 LINE L1 6121 6154 -158 297 0 0 0 chr9 26006784 26006817 -116264627 + (CA)n Simple_repeat Simple_repeat 2 34 0 711 133 13 164 chr9 26006817 26007012 -116264432 + L1MA9 LINE L1 6154 6312 0 17104 31 2 1 chr9 26007783 26010614 -116260830 - L1PA3 LINE L1 -1 6154 3321 456 289 173 6 chr9 26012637 26012793 -116258651 - MIR SINE MIR -75 187 6 2006 256 81 39 chr9 26013369 26014095 -116257349 - L1ME3A LINE L1 -13 6157 5358 2078 142 0 0 chr9 26014095 26014391 -116257053 - AluSx SINE Alu -16 296 1 2006 256 81 39 chr9 26014391 26014770 -116256674 - L1ME3A LINE L1 -812 5358 4997 192 40 0 0 chr9 26016208 26016233 -116255211 + (CA)n Simple_repeat Simple_repeat 2 26 0 219 114 0 0 chr9 26016695 26016730 -116254714 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1371 77 0 57 chr9 26016730 26016823 -116254621 - L1PA8 LINE L1 -24 6148 6051 2406 98 0 0 chr9 26016823 26017130 -116254314 - AluSq SINE Alu -6 307 1 1371 77 0 57 chr9 26017130 26017245 -116254199 - L1PA8 LINE L1 -121 6051 5952 27 0 0 0 chr9 26017515 26017542 -116253902 + AT_rich Low_complexity Low_complexity 1 27 0 342 338 74 17 chr9 26017697 26017928 -116253516 + L1M4 LINE L1 4522 4765 -1381 206 286 57 29 chr9 26018204 26018274 -116253170 + L2 LINE L2 3242 3313 0 1467 186 259 5 chr9 26018432 26018475 -116252969 - MLT2B1 LTR ERVL 0 520 489 303 28 0 0 chr9 26018475 26018511 -116252933 + (TG)n Simple_repeat Simple_repeat 1 36 0 1467 186 259 5 chr9 26018511 26018880 -116252564 - MLT2B1 LTR ERVL -31 489 3 204 318 23 34 chr9 26019341 26019429 -116252015 - L2 LINE L2 0 3313 3227 4139 107 40 54 chr9 26019541 26019707 -116251737 - LTR8 LTR ERV1 0 691 524 207 0 0 0 chr9 26019707 26019730 -116251714 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1950 112 11 4 chr9 26019735 26020013 -116251431 - AluSx SINE Alu -30 282 3 4139 107 40 54 chr9 26020013 26020541 -116250903 - LTR8 LTR ERV1 -171 520 1 458 332 43 5 chr9 26020583 26020770 -116250674 - L2 LINE L2 -516 2798 2605 292 244 103 0 chr9 26020800 26020878 -116250566 - MER69A DNA AcHobo -31 146 61 252 333 84 40 chr9 26020934 26021207 -116250237 - L2 LINE L2 -721 2593 2309 1677 190 25 19 chr9 26023402 26023538 -116247906 + MLT1A1 LTR MaLR 1 135 -230 6767 49 1 0 chr9 26023538 26024380 -116247064 + L1PA4 LINE L1 5310 6152 -3 1677 190 25 19 chr9 26024380 26024606 -116246838 + MLT1A1 LTR MaLR 135 365 0 428 209 163 8 chr9 26024758 26024887 -116246557 - L1ME LINE L1 -437 5684 5536 585 302 106 39 chr9 26025005 26025412 -116246032 - L1ME LINE L1 -748 5398 4965 1037 287 98 25 chr9 26025412 26025809 -116245635 + MLT1J2 LTR MaLR 1 426 -24 223 338 133 13 chr9 26026077 26026228 -116245216 + L2 LINE L2 2697 2865 -449 594 309 30 0 chr9 26026824 26027025 -116244419 - LTR33 LTR ERVL 0 521 315 292 333 44 18 chr9 26027094 26027208 -116244236 - LTR33A LTR ERVL -334 189 73 239 192 19 0 chr9 26028338 26028390 -116243054 + (CAT)n Simple_repeat Simple_repeat 1 53 0 320 276 82 0 chr9 26028410 26028508 -116242936 - MIR SINE MIR -26 236 131 200 352 64 32 chr9 26028543 26028668 -116242776 + L2 LINE L2 3141 3269 -3 2724 217 22 11 chr9 26030084 26030099 -116241345 - L1P LINE L1 -2451 3695 3682 285 29 0 0 chr9 26030099 26030133 -116241311 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2724 217 22 11 chr9 26030133 26030828 -116240616 - L1P LINE L1 -2464 3682 2977 * 5863 147 12 2 chr9 26030827 26031899 -116239545 + L1PA15 LINE L1 5072 6164 -1 216 0 0 0 chr9 26032567 26032591 -116238853 + (T)n Simple_repeat Simple_repeat 1 24 0 2254 119 3 0 chr9 26033081 26033391 -116238053 + AluSq SINE Alu 1 311 -2 347 227 91 11 chr9 26033396 26033484 -116237960 + L2 LINE L2 3169 3263 -9 210 91 0 0 chr9 26033487 26033520 -116237924 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 353 251 33 49 chr9 26035080 26035263 -116236181 + L1ME4a LINE L1 5727 5906 -215 249 33 0 0 chr9 26035603 26035633 -116235811 + (TG)n Simple_repeat Simple_repeat 2 31 0 359 344 44 15 chr9 26036098 26036305 -116235139 + MIR SINE MIR 45 256 -6 647 119 50 0 chr9 26036422 26036523 -116234921 + MLT1B LTR MaLR 1 106 -284 640 170 9 0 chr9 26036527 26036639 -116234805 + AluSq/x SINE Alu 1 113 -200 4123 115 95 101 chr9 26036639 26038052 -116233392 + pTR5 LTR ERV1 66 2438 0 577 239 90 0 chr9 26038077 26038250 -116233194 + FRAM SINE Alu 1 50 0 1166 198 48 58 chr9 26038250 26038543 -116232901 + MLT1B LTR MaLR 101 390 0 225 353 57 0 chr9 26039482 26039604 -116231840 + MIR3 SINE MIR 75 203 -5 250 329 37 0 chr9 26039765 26039847 -116231597 + L2 LINE L2 3228 3312 -1 363 224 216 0 chr9 26040163 26040279 -116231165 + L2 LINE L2 3173 3313 0 200 242 53 42 chr9 26040968 26041063 -116230381 + L2 LINE L2 2170 2265 -1049 252 258 0 0 chr9 26042822 26042884 -116228560 + (CAATT)n Simple_repeat Simple_repeat 1 62 0 287 352 22 0 chr9 26042884 26042975 -116228469 - L2 LINE L2 -8 3264 3172 2623 123 6 105 chr9 26043115 26043612 -116227832 - LTR32 LTR ERVL -9 462 15 522 234 48 110 chr9 26044601 26044665 -116226779 + MIR SINE MIR 49 115 -147 2427 77 3 0 chr9 26044665 26044975 -116226469 + AluY SINE Alu 1 311 0 522 234 48 110 chr9 26044975 26045137 -116226307 + MIR SINE MIR 115 261 -1 314 202 141 20 chr9 26045873 26045972 -116225472 - MER103 DNA DNA -2 164 54 1607 195 13 16 chr9 26045986 26046289 -116225155 - AluJb SINE Alu -10 302 1 21 36 0 0 chr9 26048702 26048730 -116222714 + AT_rich Low_complexity Low_complexity 1 28 0 51 42 0 0 chr9 26049777 26049849 -116221595 + AT_rich Low_complexity Low_complexity 1 72 0 7332 227 67 12 chr9 26050569 26052388 -116219056 - L1MC/D LINE L1 -743 5403 3457 1931 132 0 21 chr9 26052388 26052770 -116218674 - AluSq SINE Alu 0 376 1 7332 227 67 12 chr9 26052770 26053262 -116218182 - L1MC/D LINE L1 -2689 3457 2993 1254 197 7 62 chr9 26053271 26053575 -116217869 + AluJo SINE Alu 11 297 -15 1284 258 15 36 chr9 26053577 26054046 -116217398 - L1MC/D LINE L1 -3144 3002 2544 218 359 63 6 chr9 26054065 26054224 -116217220 + L3 LINE CR1 685 852 -725 23 33 0 0 chr9 26055938 26055968 -116215476 + AT_rich Low_complexity Low_complexity 1 30 0 348 292 62 45 chr9 26057510 26057753 -116213691 + L1MEd LINE L1 830 1076 -5043 783 136 54 27 chr9 26057769 26057916 -116213528 - MLT1B LTR MaLR -239 151 1 289 360 18 12 chr9 26057932 26058134 -116213310 + L1ME LINE L1 5491 5700 -462 1625 172 7 24 chr9 26058271 26058562 -116212882 + AluJo SINE Alu 6 291 -21 1470 204 92 67 chr9 26058711 26059202 -116212242 + MLT1D LTR MaLR 1 503 -2 21 0 0 0 chr9 26059535 26059556 -116211888 + AT_rich Low_complexity Low_complexity 1 21 0 397 202 17 34 chr9 26060471 26060649 -116210795 + CT-rich Low_complexity Low_complexity 4 178 0 312 27 0 0 chr9 26061494 26061531 -116209913 + (CA)n Simple_repeat Simple_repeat 1 37 0 1655 172 4 4 chr9 26061537 26061810 -116209634 - AluJo SINE Alu -31 281 9 35 54 0 0 chr9 26062292 26062348 -116209096 + AT_rich Low_complexity Low_complexity 1 56 0 1579 276 96 29 chr9 26062353 26063069 -116208375 - L1ME3 LINE L1 -2 6160 5397 1665 134 48 101 chr9 26063079 26063475 -116207969 - THE1C LTR MaLR 0 375 1 1874 293 106 18 chr9 26063512 26063699 -116207745 - L1ME3 LINE L1 -814 5332 5163 216 0 0 0 chr9 26063699 26063723 -116207721 + (TA)n Simple_repeat Simple_repeat 2 25 0 1878 143 4 0 chr9 26063723 26064002 -116207442 - AluSx SINE Alu -27 285 6 1874 293 106 18 chr9 26064002 26065464 -116205980 - L1ME3 LINE L1 -982 5164 3494 2085 231 79 63 chr9 26065470 26066252 -116205192 - L1ME1 LINE L1 -5 6230 5436 2784 255 86 39 chr9 26066321 26067452 -116203992 - L1ME1 LINE L1 -5136 1260 77 1891 137 32 48 chr9 26067453 26067832 -116203612 + THE1C LTR MaLR 1 373 -2 28 29 0 0 chr9 26067894 26067929 -116203515 + AT_rich Low_complexity Low_complexity 1 35 0 11377 169 43 20 chr9 26067929 26070575 -116200869 - L1MA8 LINE L1 -6 6285 3558 2068 127 0 0 chr9 26070575 26070858 -116200586 - AluSx SINE Alu -27 285 3 11377 169 43 20 chr9 26070858 26071581 -116199863 - L1MA8 LINE L1 -2733 3558 2853 274 235 83 30 chr9 26071591 26071723 -116199721 - L1ME3 LINE L1 -2669 3477 3339 1844 199 25 0 chr9 26072033 26072389 -116199055 - MLT1A1 LTR MaLR 0 365 1 191 365 96 10 chr9 26072501 26072605 -116198839 + L2 LINE L2 3198 3310 -3 390 21 0 0 chr9 26073636 26073683 -116197761 + (TG)n Simple_repeat Simple_repeat 1 47 0 244 321 37 9 chr9 26074116 26074225 -116197219 - MIR3 SINE MIR -13 195 84 15173 32 0 0 chr9 26074226 26076049 -116195395 - L1P LINE L1 -892 5254 3432 4500 32 2 0 chr9 26076049 26076621 -116194823 + L1PA3 LINE L1 5617 6192 0 294 253 25 13 chr9 26076877 26076956 -116194488 - L2 LINE L2 -4 3309 3230 389 309 93 34 chr9 26076976 26077180 -116194264 + MIR SINE MIR 40 255 -7 11851 174 20 14 chr9 26077785 26078790 -116192654 - L1PA13 LINE L1 -1 6162 5165 2197 116 0 0 chr9 26078790 26079084 -116192360 - AluSc SINE Alu -15 294 1 11851 174 20 14 chr9 26079084 26081230 -116190214 - L1PA13 LINE L1 -998 5165 2986 2074 152 33 25 chr9 26081231 26081592 -116189852 - THE1B LTR MaLR 0 364 1 9887 116 10 30 chr9 26081592 26083129 -116188315 - THE1B-int LTR MaLR 0 1580 1 640 158 0 0 chr9 26083129 26083243 -116188201 - L1PA13 LINE L1 -3157 2989 2876 357 288 92 32 chr9 26083664 26084129 -116187315 - L1M4 LINE L1 -751 5395 4903 279 327 54 25 chr9 26085026 26085304 -116186140 + L1ME4a LINE L1 5607 5892 -229 237 179 73 98 chr9 26085344 26085467 -116185977 + L1ME4a LINE L1 5991 6110 -11 816 296 28 33 chr9 26085537 26085899 -116185545 - L1ME3 LINE L1 0 6162 5803 493 160 4 153 chr9 26085923 26086081 -116185363 - L1ME3 LINE L1 -587 5579 5457 419 298 60 22 chr9 26086176 26086495 -116184949 - L1ME LINE L1 -5064 1006 676 330 285 83 43 chr9 26087191 26087542 -116183902 - L1MEc LINE L1 -3825 2390 2066 1857 203 46 28 chr9 26087694 26088153 -116183291 - MLT1C LTR MaLR 0 467 1 248 274 80 28 chr9 26088315 26088527 -116182917 - L1MEc LINE L1 -4606 1609 1387 7098 47 9 1 chr9 26088534 26089713 -116181731 + L1PA5 LINE L1 4962 6147 -7 204 40 0 0 chr9 26089794 26089819 -116181625 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1122 258 59 94 chr9 26089961 26090437 -116181007 + LTR40a LTR ERVL 2 517 -2 2161 115 3 0 chr9 26090453 26090749 -116180695 + AluSx SINE Alu 1 297 -15 823 215 84 34 chr9 26090870 26091228 -116180216 - L1MEc LINE L1 -5063 1333 958 1279 194 169 3 chr9 26091232 26091546 -116179898 + MER47A DNA MER2_type 1 366 0 967 283 36 26 chr9 26091567 26091988 -116179456 - L1MEc LINE L1 -5462 934 510 4531 186 37 14 chr9 26092532 26093489 -116177955 - L1MC1 LINE L1 -5 6328 5350 950 142 59 50 chr9 26093501 26093720 -116177724 - L1MCa LINE L1 -4432 1994 1774 546 192 15 39 chr9 26093743 26093873 -116177571 - L1MB3 LINE L1 -9 6174 6048 1121 239 152 16 chr9 26094155 26094477 -116176967 - MSTD LTR MaLR -30 366 1 204 306 143 34 chr9 26096218 26096427 -116175017 - L2 LINE L2 -166 3147 2916 265 331 118 24 chr9 26096709 26096878 -116174566 - MIR SINE MIR -50 212 28 4839 193 23 36 chr9 26097116 26099033 -116172411 - L1MA10 LINE L1 -41 6529 4643 21 36 0 0 chr9 26099045 26099073 -116172371 + AT_rich Low_complexity Low_complexity 1 28 0 6041 148 28 21 chr9 26099073 26099653 -116171791 - L1MA3 LINE L1 0 7724 7149 2437 97 43 6 chr9 26099653 26100003 -116171441 + THE1B LTR MaLR 1 363 -1 6041 148 28 21 chr9 26100003 26100493 -116170951 - L1MA3 LINE L1 -575 7149 6654 2331 93 3 10 chr9 26100493 26100806 -116170638 - AluY SINE Alu 0 311 1 6041 148 28 21 chr9 26100806 26101126 -116170318 - L1MA3 LINE L1 -1070 6654 6338 794 140 20 27 chr9 26101155 26101305 -116170139 - L1MA3 LINE L1 -4160 3405 3257 3884 183 25 18 chr9 26101306 26102054 -116169390 - L1MA10 LINE L1 -1752 4630 3874 3085 86 58 0 chr9 26102054 26102482 -116168962 - MLT2A2 LTR ERVL 0 453 1 3884 183 25 18 chr9 26102482 26102584 -116168860 - L1MA10 LINE L1 -2508 3874 3774 1088 268 56 24 chr9 26102583 26103274 -116168170 - L1MA10 LINE L1 -3613 2769 2044 * 2116 300 89 30 chr9 26103369 26103994 -116167450 - L1MA10 LINE L1 -5210 1103 516 2226 145 11 16 chr9 26103994 26104360 -116167084 + THE1B LTR MaLR 1 364 0 11287 98 13 5 chr9 26104360 26105922 -116165522 + THE1B-int LTR MaLR 1 1576 -4 1999 166 28 22 chr9 26105926 26106288 -116165156 + THE1B LTR MaLR 1 364 0 2116 300 89 30 chr9 26106288 26106535 -116164909 - L1MA10 LINE L1 -5799 514 173 7618 190 21 42 chr9 26106545 26108268 -116163176 - L1MCa LINE L1 -4736 1690 5 1306 303 106 19 chr9 26108271 26108894 -116162550 - HAL1 LINE L1 -1828 679 3 297 261 0 0 chr9 26109179 26109248 -116162196 - L2 LINE L2 -1 3312 3244 29 0 0 0 chr9 26109825 26109854 -116161590 + AT_rich Low_complexity Low_complexity 1 29 0 435 256 31 3 chr9 26109952 26110061 -116161383 - MLT1J2 LTR MaLR -280 199 70 24 53 0 0 chr9 26110352 26110390 -116161054 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 26110985 26111006 -116160438 + AT_rich Low_complexity Low_complexity 1 21 0 267 314 95 95 chr9 26111472 26111714 -116159730 + MLT1K LTR MaLR 118 359 -229 1175 75 6 0 chr9 26111745 26111906 -116159538 + L1PB2 LINE L1 5987 6148 -3 195 235 0 0 chr9 26112140 26112238 -116159206 + (TA)n Simple_repeat Simple_repeat 1 98 0 196 349 16 0 chr9 26112276 26112339 -116159105 + L2 LINE L2 3174 3237 -35 4378 201 25 46 chr9 26112344 26113264 -116158180 + MER54A LTR ERVL 1 901 0 650 302 72 4 chr9 26113483 26113724 -116157720 + MIR SINE MIR 6 262 0 348 269 163 0 chr9 26114515 26114656 -116156788 + MIR SINE MIR 79 242 -20 276 154 0 0 chr9 26115320 26115372 -116156072 + T-rich Low_complexity Low_complexity 1 52 0 5617 22 3 2 chr9 26115420 26116262 -116155182 - L1PA4 LINE L1 -598 5557 4715 4708 36 5 12 chr9 26116262 26116829 -116154615 + L1PA4 LINE L1 5571 6153 -2 190 337 0 47 chr9 26116977 26117063 -116154381 + MIR SINE MIR 30 111 -97 981 180 6 11 chr9 26117083 26117261 -116154183 + MER5B DNA MER1_type 1 177 -1 255 327 56 0 chr9 26119238 26119345 -116152099 + L2 LINE L2 3147 3259 -13 650 193 117 53 chr9 26119905 26120265 -116151179 + MLT1G LTR MaLR 109 590 0 528 242 52 7 chr9 26120681 26120834 -116150610 - MER103 DNA DNA 0 166 7 21 36 0 0 chr9 26121283 26121311 -116150133 + AT_rich Low_complexity Low_complexity 1 28 0 268 195 381 0 chr9 26122126 26122244 -116149200 + MER103 DNA DNA 2 164 -2 192 301 135 19 chr9 26122487 26122615 -116148829 - MIR SINE MIR -67 141 29 402 80 0 40 chr9 26123121 26123196 -116148248 + (TTCTC)n Simple_repeat Simple_repeat 4 75 0 287 286 26 0 chr9 26124142 26124219 -116147225 + L2 LINE L2 3232 3310 -3 210 339 45 27 chr9 26124242 26124354 -116147090 - MIR SINE MIR -58 150 37 2333 66 0 3 chr9 26124861 26125163 -116146281 - AluY SINE Alu -10 301 1 25 0 0 0 chr9 26125351 26125376 -116146068 + AT_rich Low_complexity Low_complexity 1 25 0 42037 39 26 2 chr9 26126363 26132405 -116139039 - L1PA3 LINE L1 0 6155 7 180 77 0 0 chr9 26133019 26133045 -116138399 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1442 251 94 7 chr9 26133582 26134040 -116137404 + L2 LINE L2 2077 2574 -740 613 191 53 15 chr9 26134040 26134171 -116137273 - MER63 DNA MER1_type -286 776 15 662 246 56 6 chr9 26134694 26134873 -116136571 - MER5A DNA MER1_type 0 189 2 584 281 7 14 chr9 26135408 26135547 -116135897 + MER5A DNA MER1_type 2 139 -50 23 33 0 0 chr9 26135827 26135857 -116135587 + AT_rich Low_complexity Low_complexity 1 30 0 436 294 138 25 chr9 26136242 26136332 -116135112 - MER5B DNA MER1_type 0 178 100 1816 176 48 28 chr9 26136332 26136690 -116134754 - MLT1A1 LTR MaLR 0 365 1 436 294 138 25 chr9 26136690 26136759 -116134685 - MER5B DNA MER1_type -78 100 1 23 0 0 0 chr9 26136878 26136901 -116134543 + AT_rich Low_complexity Low_complexity 1 23 0 196 289 0 19 chr9 26137692 26137744 -116133700 - MIR SINE MIR -134 74 24 2744 87 0 0 chr9 26138455 26138824 -116132620 - L1PA11 LINE L1 -304 5864 5496 1759 131 39 26 chr9 26138826 26139131 -116132313 + L1PA11 LINE L1 5864 6172 -2 183 129 0 0 chr9 26139515 26139546 -116131898 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 268 353 33 20 chr9 26139884 26140034 -116131410 - MIR3 SINE MIR -6 202 51 7464 94 5 20 chr9 26140598 26141682 -116129762 - MER11C LTR ERVK -4 1067 1 438 198 30 10 chr9 26141694 26141795 -116129649 - MER5A DNA MER1_type -77 112 10 599 279 65 5 chr9 26143224 26143439 -116128005 - L2 LINE L2 -259 3054 2827 627 297 115 63 chr9 26143474 26144018 -116127426 + L2 LINE L2 2714 3298 -15 190 184 29 39 chr9 26144047 26144150 -116127294 + CT-rich Low_complexity Low_complexity 4 105 0 27 0 0 0 chr9 26146290 26146317 -116125127 + AT_rich Low_complexity Low_complexity 1 27 0 388 282 125 68 chr9 26146884 26147598 -116123846 - L2 LINE L2 0 3313 2458 231 240 27 13 chr9 26147971 26148046 -116123398 - MIR SINE MIR -4 258 183 997 297 101 23 chr9 26148395 26148918 -116122526 - L2 LINE L2 0 3313 2753 1699 146 114 7 chr9 26149253 26149534 -116121910 + AluSx SINE Alu 1 311 -1 1932 187 25 42 chr9 26149796 26150271 -116121173 + MLT1C LTR MaLR 1 467 0 195 323 75 21 chr9 26150779 26150872 -116120572 - MIR SINE MIR -66 196 99 185 206 96 68 chr9 26150932 26151005 -116120439 - L2 LINE L2 -300 2972 2898 195 114 0 0 chr9 26151136 26151171 -116120273 + (TATG)n Simple_repeat Simple_repeat 4 38 0 225 0 0 0 chr9 26151394 26151419 -116120025 + (TG)n Simple_repeat Simple_repeat 2 26 0 1934 146 27 27 chr9 26151715 26152086 -116119358 - THE1C LTR MaLR -2 373 3 29 47 0 0 chr9 26152254 26152297 -116119147 + AT_rich Low_complexity Low_complexity 1 43 0 849 123 27 0 chr9 26152297 26152443 -116119001 - L1MA9 LINE L1 0 6312 6163 1056 103 35 0 chr9 26152443 26152617 -116118827 - L1MA9 LINE L1 -829 5483 5304 * 1532 236 3 5 chr9 26152615 26152984 -116118460 - L1 LINE L1 -1962 4420 4053 478 228 0 0 chr9 26152983 26153084 -116118360 + L1 LINE L1 3713 3813 -2333 * 2930 270 69 17 chr9 26153074 26154030 -116117414 - L1 LINE L1 -3630 2752 1896 1386 276 3 19 chr9 26154030 26154400 -116117044 - MLT1A1 LTR MaLR -1 364 1 2930 270 69 17 chr9 26154400 26155376 -116116068 - L1 LINE L1 -4486 1896 972 647 298 63 44 chr9 26155747 26156170 -116115274 - L1 LINE L1 -5857 456 33 2324 176 69 0 chr9 26156174 26156611 -116114833 - L1MC3 LINE L1 -11 7774 7308 234 0 0 0 chr9 26157040 26157066 -116114378 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1994 114 17 3 chr9 26157851 26158140 -116113304 - AluSx SINE Alu -19 293 1 853 180 12 123 chr9 26158295 26158539 -116112905 + MER20 DNA MER1_type 1 217 -2 230 342 52 32 chr9 26160544 26160699 -116110745 - L2 LINE L2 -470 2844 2687 275 360 40 16 chr9 26161177 26161302 -116110142 + L2 LINE L2 3139 3266 -6 201 303 0 101 chr9 26162916 26163005 -116108439 + MIR SINE MIR 16 95 -113 189 0 0 0 chr9 26163394 26163415 -116108029 + (TA)n Simple_repeat Simple_repeat 1 21 0 268 107 71 0 chr9 26164433 26164517 -116106927 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 21 36 0 0 chr9 26164577 26164605 -116106839 + AT_rich Low_complexity Low_complexity 1 28 0 2509 31 7 3 chr9 26164904 26165196 -116106248 - AluY SINE Alu -4 307 15 440 344 60 0 chr9 26165800 26166018 -116105426 + L2 LINE L2 2141 2371 -943 315 0 0 0 chr9 26167813 26167848 -116103596 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr9 26167962 26167990 -116103454 + AT_rich Low_complexity Low_complexity 1 28 0 396 0 94 0 chr9 26168035 26168088 -116103356 - L1PA3 LINE L1 -1 6154 6097 2661 28 3 0 chr9 26168088 26168405 -116103039 + L1PA4 LINE L1 5762 6079 -76 2405 67 0 7 chr9 26168725 26169024 -116102420 + AluY SINE Alu 1 297 -14 273 265 15 0 chr9 26169133 26169201 -116102243 + MIR SINE MIR 85 153 -109 812 164 8 0 chr9 26169201 26169335 -116102109 + MER47A DNA MER2_type 4 138 -228 486 130 0 39 chr9 26169336 26169397 -116102047 - Tigger7 DNA MER2_type -27 2464 2405 2233 122 0 0 chr9 26169397 26169701 -116101743 - AluSx SINE Alu -8 304 1 486 130 0 39 chr9 26169701 26169716 -116101728 - Tigger7 DNA MER2_type -86 2405 2391 1331 228 15 0 chr9 26169731 26169990 -116101454 - Tigger7 DNA MER2_type -469 264 2 1354 179 8 0 chr9 26169991 26170226 -116101218 + MER47A DNA MER2_type 129 365 -1 262 309 0 12 chr9 26170227 26170311 -116101133 + MIR SINE MIR 153 235 -27 242 250 0 0 chr9 26170323 26170375 -116101069 + MIR SINE MIR 210 261 -1 1057 115 0 0 chr9 26170596 26170752 -116100692 + L1MA1 LINE L1 6143 6298 -4 216 172 35 35 chr9 26171674 26171761 -116099683 + (TA)n Simple_repeat Simple_repeat 2 88 0 495 33 0 0 chr9 26171771 26171832 -116099612 + (CA)n Simple_repeat Simple_repeat 2 62 0 1906 96 7 38 chr9 26172750 26173041 -116098403 + AluSx SINE Alu 1 282 -30 315 0 0 0 chr9 26173046 26173081 -116098363 + (TAA)n Simple_repeat Simple_repeat 2 36 0 224 150 125 0 chr9 26173196 26173236 -116098208 - MIR SINE MIR -69 139 95 284 306 105 7 chr9 26174314 26174457 -116096987 - L1ME3A LINE L1 -9 6230 6073 464 279 220 40 chr9 26174523 26174896 -116096548 + LTR16A1 LTR ERVL 1 440 -17 548 251 67 124 chr9 26174979 26175324 -116096120 - L1ME3A LINE L1 -216 6023 5727 661 239 50 6 chr9 26175324 26175504 -116095940 - MER5A DNA MER1_type 0 189 2 548 251 67 124 chr9 26175504 26175771 -116095673 - L1ME3A LINE L1 -512 5727 5446 324 321 156 18 chr9 26175857 26176081 -116095363 - L1ME3A LINE L1 -1144 5071 4817 305 324 71 18 chr9 26176115 26176307 -116095137 - L1ME3A LINE L1 -3707 2508 2301 997 261 13 8 chr9 26176307 26176545 -116094899 - MER8 DNA MER2_type 0 239 1 305 324 71 18 chr9 26176545 26176577 -116094867 - L1ME3A LINE L1 -3914 2301 2272 256 275 0 0 chr9 26176591 26176671 -116094773 - L1ME3A LINE L1 -4098 2298 2219 218 224 0 17 chr9 26176758 26176816 -116094628 + (CATA)n Simple_repeat Simple_repeat 3 59 0 706 243 40 52 chr9 26177474 26177725 -116093719 - LTR33 LTR ERVL -236 285 38 952 246 33 0 chr9 26178119 26178330 -116093114 + MER58A DNA MER1_type 1 218 -6 312 342 74 21 chr9 26178734 26178924 -116092520 - MIR SINE MIR -10 252 53 636 206 160 29 chr9 26180490 26180728 -116090716 - L1ME3A LINE L1 -172 6067 5799 4212 45 6 0 chr9 26181369 26181907 -116089537 - L1PA5 LINE L1 -3303 2843 2303 20103 49 7 6 chr9 26181907 26185229 -116086215 + L1PA5 LINE L1 2812 6146 -8 844 261 108 30 chr9 26186141 26186574 -116084870 - L1ME3A LINE L1 -418 5813 5357 515 278 70 29 chr9 26186608 26186881 -116084563 - L1ME3A LINE L1 -844 5371 5088 356 254 28 108 chr9 26186887 26187174 -116084270 - L1ME3A LINE L1 -1220 4995 4732 350 303 18 46 chr9 26187171 26187389 -116084055 - L1ME3A LINE L1 -4604 1792 1581 * 827 222 5 0 chr9 26187538 26187741 -116083703 - L1MC3 LINE L1 -1 7784 7581 349 307 168 3 chr9 26187741 26188044 -116083400 - L1ME3A LINE L1 -5157 1048 696 921 120 0 0 chr9 26188133 26188275 -116083169 + (TCCCC)n Simple_repeat Simple_repeat 2 143 0 1721 194 7 0 chr9 26188291 26188600 -116082844 - AluJb SINE Alu -1 311 1 244 301 64 68 chr9 26188780 26189016 -116082428 - L1ME3A LINE L1 -5951 445 211 1974 176 14 3 chr9 26189792 26190150 -116081294 - MER47A DNA MER2_type -3 363 2 357 102 0 0 chr9 26190160 26190219 -116081225 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1206 102 0 0 chr9 26190256 26190432 -116081012 + (TA)n Simple_repeat Simple_repeat 1 176 0 307 299 35 0 chr9 26190449 26190536 -116080908 - L1MC4 LINE L1 -1339 6703 6614 21 57 0 0 chr9 26190559 26190594 -116080850 + AT_rich Low_complexity Low_complexity 1 35 0 546 269 14 7 chr9 26190729 26190874 -116080570 - L2 LINE L2 -1 3312 3167 2775 201 81 32 chr9 26191657 26191789 -116079655 - LTR48 LTR ERV1 0 787 663 2660 110 0 3 chr9 26191789 26192154 -116079290 - THE1B LTR MaLR 0 364 1 9817 118 41 28 chr9 26192156 26193714 -116077730 - THE1B-int LTR MaLR -2 1578 1 2698 113 0 0 chr9 26193714 26194078 -116077366 - THE1B LTR MaLR 0 364 1 2775 201 81 32 chr9 26194078 26194691 -116076753 - LTR48 LTR ERV1 -123 664 1 275 358 42 17 chr9 26195977 26196097 -116075347 - MIR SINE MIR -120 142 20 818 181 41 13 chr9 26198249 26198468 -116072976 - L1MC3 LINE L1 0 7769 6114 1416 189 102 0 chr9 26198469 26198744 -116072700 - AluJo SINE Alu -7 305 3 339 44 0 0 chr9 26199343 26199388 -116072056 + (TG)n Simple_repeat Simple_repeat 2 46 0 333 289 77 0 chr9 26199405 26199509 -116071935 - L2 LINE L2 -3 3310 3199 236 203 54 27 chr9 26200532 26200606 -116070838 - L1MC4 LINE L1 -1353 6689 6614 441 302 36 7 chr9 26201150 26201289 -116070155 + MIR SINE MIR 8 150 -112 704 332 83 34 chr9 26201553 26202045 -116069399 - L2 LINE L2 -17 3296 2781 1235 340 103 12 chr9 26202116 26202874 -116068570 - L2 LINE L2 -1281 2033 1207 456 35 0 0 chr9 26202958 26203016 -116068428 + (CTG)n Simple_repeat Simple_repeat 2 59 0 1363 226 50 3 chr9 26203480 26203817 -116067627 - L1MB3 LINE L1 -8 6175 5823 11732 174 37 19 chr9 26203823 26204684 -116066760 - L1M4c LINE L1 -3884 2500 1656 207 0 0 0 chr9 26204684 26204707 -116066737 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11732 174 37 19 chr9 26204707 26206284 -116065160 - L1M4c LINE L1 -4728 1656 18 39 22 0 0 chr9 26207032 26207078 -116064366 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 26207259 26207280 -116064164 + AT_rich Low_complexity Low_complexity 1 21 0 233 213 0 0 chr9 26207675 26207722 -116063722 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 972 178 56 0 chr9 26207919 26208150 -116063294 + MER33 DNA MER1_type 48 291 -33 4442 188 29 59 chr9 26208157 26208568 -116062876 + L1MA10 LINE L1 4791 5213 -1121 1301 194 12 76 chr9 26208568 26208898 -116062546 + AluJo SINE Alu 1 309 -3 4442 188 29 59 chr9 26208898 26209921 -116061523 + L1MA10 LINE L1 5213 6163 -171 387 41 0 0 chr9 26209921 26209970 -116061474 + (CAT)n Simple_repeat Simple_repeat 3 51 0 4442 188 29 59 chr9 26209970 26210107 -116061337 + L1MA10 LINE L1 6163 6303 -31 256 157 78 0 chr9 26210141 26210192 -116061252 + MER33 DNA MER1_type 304 358 -5 33 43 0 0 chr9 26210284 26210331 -116061113 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 26210384 26210416 -116061028 + AT_rich Low_complexity Low_complexity 1 32 0 5745 94 67 2 chr9 26210432 26211752 -116059692 - L1PA10 LINE L1 -2 6166 4813 2106 134 0 3 chr9 26213257 26213563 -116057881 + AluSc SINE Alu 3 307 -2 1796 167 146 3 chr9 26213639 26214010 -116057434 - MSTA LTR MaLR 0 428 5 363 272 9 26 chr9 26214081 26214195 -116057249 - L1MC4 LINE L1 -980 7062 6951 353 344 65 45 chr9 26214673 26214920 -116056524 - L3b LINE CR1 -55 1528 1277 184 329 110 0 chr9 26215038 26215120 -116056324 - MIR SINE MIR -7 255 165 1532 229 169 18 chr9 26215181 26215618 -116055826 + MLT2B1 LTR ERVL 18 520 0 315 253 67 0 chr9 26215619 26215694 -116055750 - MIR SINE MIR -182 80 1 223 269 0 0 chr9 26215749 26215801 -116055643 - MIR SINE MIR -110 152 101 651 196 14 184 chr9 26215805 26216152 -116055292 - MER4C LTR ERV1 -37 428 141 2300 90 7 7 chr9 26216644 26216954 -116054490 + AluSg SINE Alu 1 310 0 21 36 0 0 chr9 26216969 26216997 -116054447 + AT_rich Low_complexity Low_complexity 1 28 0 820 54 36 0 chr9 26216997 26217108 -116054336 - L1PA3 LINE L1 0 6155 6041 691 286 156 53 chr9 26217989 26218583 -116052861 - L2 LINE L2 -3 3310 2588 1825 143 60 33 chr9 26218583 26218948 -116052496 - THE1C LTR MaLR 0 375 1 691 286 156 53 chr9 26218948 26219288 -116052156 - L2 LINE L2 -725 2588 2284 1195 245 110 0 chr9 26219321 26219631 -116051813 + MER2 DNA MER2_type 2 345 0 498 307 49 7 chr9 26219816 26219971 -116051473 - MIR SINE MIR -66 142 21 235 394 19 7 chr9 26219976 26220131 -116051313 - L2 LINE L2 -1150 2164 2008 583 238 106 12 chr9 26220356 26220516 -116050928 - MIR SINE MIR -72 190 16 475 292 80 48 chr9 26220532 26220737 -116050707 + L1ME LINE L1 5088 5285 -884 2316 101 3 0 chr9 26220737 26221034 -116050410 + AluSp SINE Alu 1 298 -15 475 292 80 48 chr9 26221034 26221423 -116050021 + L1ME LINE L1 5285 5707 -462 2270 152 70 10 chr9 26221423 26221825 -116049619 - MSTB LTR MaLR 0 426 1 8218 184 42 34 chr9 26221836 26223457 -116047987 - MSTB-int LTR MaLR -17 1634 1 1495 207 146 16 chr9 26223457 26223649 -116047795 - MSTB LTR MaLR 0 426 260 213 39 0 0 chr9 26223649 26223675 -116047769 + (GA)n Simple_repeat Simple_repeat 2 27 0 1495 207 146 16 chr9 26223675 26223859 -116047585 - MSTB LTR MaLR -166 260 1 29 0 0 0 chr9 26223864 26223893 -116047551 + AT_rich Low_complexity Low_complexity 1 29 0 302 237 0 13 chr9 26223897 26223983 -116047461 + L1ME LINE L1 5724 5808 -356 323 311 198 21 chr9 26224026 26224360 -116047084 - L2 LINE L2 -1609 1705 1313 211 232 125 0 chr9 26224636 26224692 -116046752 - L2 LINE L2 -1 3271 3209 206 234 149 0 chr9 26224792 26224886 -116046558 - L2 LINE L2 -147 3166 3059 904 272 56 91 chr9 26224890 26225061 -116046383 - L2 LINE L2 -1463 1851 1675 1827 199 91 25 chr9 26225061 26225500 -116045944 + MLT2B1 LTR ERVL 3 478 -42 180 0 0 0 chr9 26225500 26225520 -116045924 + (TC)n Simple_repeat Simple_repeat 1 20 0 1827 199 91 25 chr9 26225520 26225562 -116045882 + MLT2B1 LTR ERVL 478 516 -4 904 272 56 91 chr9 26225562 26225948 -116045496 - L2 LINE L2 -1639 1675 1314 315 0 0 0 chr9 26227057 26227092 -116044352 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 82 0 0 chr9 26227246 26227295 -116044149 + AT_rich Low_complexity Low_complexity 1 49 0 186 325 49 41 chr9 26228390 26228513 -116042931 + MIR SINE MIR 102 225 -37 208 258 0 45 chr9 26229125 26229191 -116042253 - MIR SINE MIR -42 220 158 397 313 17 34 chr9 26229291 26229470 -116041974 + MER117 DNA MER1_type 1 176 -21 248 247 55 27 chr9 26230565 26230638 -116040806 + L2 LINE L2 2213 2287 -1027 199 336 35 26 chr9 26230667 26230783 -116040661 + L2 LINE L2 2440 2556 -758 228 313 104 0 chr9 26231063 26231130 -116040314 + MIR SINE MIR 33 106 -156 332 362 67 82 chr9 26231856 26232171 -116039273 + L2 LINE L2 2963 3272 0 245 222 42 14 chr9 26232543 26232615 -116038829 + CT-rich Low_complexity Low_complexity 6 79 0 245 343 9 9 chr9 26233657 26233762 -116037682 - L1MC/D LINE L1 -2020 5788 5684 405 302 99 21 chr9 26234039 26234231 -116037213 - MIR SINE MIR -17 245 39 208 383 53 0 chr9 26234482 26234576 -116036868 + L2 LINE L2 3215 3313 0 383 151 0 0 chr9 26237441 26237514 -116033930 - L1MA8 LINE L1 0 6291 6219 22 35 0 0 chr9 26238156 26238185 -116033259 + AT_rich Low_complexity Low_complexity 1 29 0 2233 141 0 5 chr9 26238619 26238989 -116032455 - L1PB1 LINE L1 -1 6150 5783 300 169 0 0 chr9 26239000 26239077 -116032367 + (TA)n Simple_repeat Simple_repeat 2 78 0 6234 19 35 0 chr9 26239180 26239912 -116031532 - L1PA3 LINE L1 0 6155 5398 * 10167 27 1 0 chr9 26239906 26241126 -116030318 + L1PA3 LINE L1 4163 5383 -763 3299 94 62 3 chr9 26241122 26241702 -116029742 - L1PB1 LINE L1 -371 5780 5169 * 1031 175 41 0 chr9 26241682 26241876 -116029568 - L1PBa LINE L1 -5270 1593 1392 * 834 221 0 15 chr9 26241873 26242068 -116029376 - L1PBa LINE L1 -6666 197 6 * 377 329 58 0 chr9 26242415 26242552 -116028892 - MIR SINE MIR -70 192 48 1724 174 3 7 chr9 26243567 26243849 -116027595 + AluJb SINE Alu 2 282 -30 300 53 0 0 chr9 26243853 26243891 -116027553 + (TC)n Simple_repeat Simple_repeat 1 38 0 193 308 68 43 chr9 26243912 26244029 -116027415 + MIR SINE MIR 102 221 -41 597 279 19 0 chr9 26244037 26244191 -116027253 - MIR SINE MIR -21 241 85 920 221 211 33 chr9 26244191 26244522 -116026922 + MSTD LTR MaLR 1 390 -6 216 358 0 0 chr9 26244524 26244591 -116026853 - MIR SINE MIR -183 79 13 1704 192 7 0 chr9 26245881 26246173 -116025271 + AluJo SINE Alu 2 295 -17 323 351 85 6 chr9 26246330 26246495 -116024949 - MER5B DNA MER1_type 0 178 1 183 298 53 0 chr9 26246506 26246563 -116024881 + MER5B DNA MER1_type 119 178 0 203 225 0 0 chr9 26246919 26246959 -116024485 - L2 LINE L2 -17 3255 3216 868 262 37 12 chr9 26246987 26247231 -116024213 - MIR SINE MIR 0 262 13 7125 50 7 0 chr9 26248946 26249828 -116021616 + L1PA7 LINE L1 5259 6146 -8 207 0 0 0 chr9 26251038 26251061 -116020383 + (T)n Simple_repeat Simple_repeat 1 23 0 255 103 0 0 chr9 26252497 26252516 -116018928 + (TG)n Simple_repeat Simple_repeat 1 58 0 255 103 0 0 chr9 26252516 26252555 -116018889 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 51 0 0 chr9 26252651 26252690 -116018754 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr9 26255500 26255522 -116015922 + AT_rich Low_complexity Low_complexity 1 22 0 195 184 41 20 chr9 26256115 26256164 -116015280 - L2 LINE L2 0 3313 3264 281 270 212 16 chr9 26256382 26256571 -116014873 + MIR SINE MIR 35 260 -2 1840 174 33 30 chr9 26257499 26257862 -116013582 - THE1B LTR MaLR 0 364 1 10985 108 12 10 chr9 26257862 26258170 -116013274 - THE1B-int LTR MaLR 0 1580 1274 2822 3 0 0 chr9 26258170 26258474 -116012970 - AluYa5 SINE Alu -7 304 1 10985 108 12 10 chr9 26258474 26259742 -116011702 - THE1B-int LTR MaLR -306 1274 1 1835 158 38 49 chr9 26259742 26260110 -116011334 - THE1B LTR MaLR 0 364 1 1552 209 18 4 chr9 26260480 26260758 -116010686 - AluJb SINE Alu -30 282 1 222 329 161 7 chr9 26260817 26260960 -116010484 - MIR SINE MIR -49 213 49 21 0 0 0 chr9 26261749 26261770 -116009674 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr9 26261823 26261850 -116009594 + (TA)n Simple_repeat Simple_repeat 2 28 0 294 307 68 0 chr9 26261926 26262014 -116009430 - L2 LINE L2 -26 3246 3153 468 280 153 11 chr9 26262068 26262257 -116009187 + MIR SINE MIR 46 261 -1 374 385 52 38 chr9 26262609 26263030 -116008414 - L2 LINE L2 -527 2787 2361 3523 171 52 16 chr9 26263200 26263820 -116007624 + L1MA3 LINE L1 18 659 -6906 12743 162 13 9 chr9 26263828 26265957 -116005487 + L1MA3 LINE L1 805 2941 -4624 17286 194 60 8 chr9 26265986 26272569 -115998875 - L1P4 LINE L1 -696 6910 7 1452 204 42 7 chr9 26272568 26272974 -115998470 + L1MA3 LINE L1 4305 4724 -2841 * 5897 144 16 44 chr9 26272984 26274382 -115997062 + L1MA3 LINE L1 6380 7724 0 2757 123 84 71 chr9 26274906 26275130 -115996314 - MER4A LTR ERV1 0 600 381 2481 66 0 0 chr9 26275130 26275431 -115996013 + AluY SINE Alu 1 301 -10 2757 123 84 71 chr9 26275431 26275798 -115995646 - MER4A LTR ERV1 -219 381 1 191 342 72 18 chr9 26276236 26276347 -115995097 - MIR SINE MIR -127 135 19 203 280 0 0 chr9 26276405 26276455 -115994989 - L3 LINE CR1 -254 1323 1274 295 246 30 46 chr9 26276504 26276619 -115994825 - MER101 LTR ERV1 -14 556 341 1044 174 119 0 chr9 26276778 26276979 -115994465 - MER101B LTR ERV1 -342 228 4 586 282 74 10 chr9 26276986 26277188 -115994256 - LTR49-int LTR ERV1 -1023 7097 6883 1916 175 26 17 chr9 26277366 26277788 -115993656 - LTR49-int LTR ERV1 -1830 4501 4076 304 140 60 70 chr9 26277801 26277901 -115993543 - LTR49-int LTR ERV1 -2369 2567 2469 * 1558 208 77 42 chr9 26277892 26278581 -115992863 - LTR49-int LTR ERV1 -2554 2569 1857 276 169 0 0 chr9 26278576 26278635 -115992809 - LTR49-int LTR ERV1 -3870 2888 2830 * 437 181 39 216 chr9 26278758 26278990 -115992454 - LTR49-int LTR ERV1 -2882 3449 3259 1065 193 69 43 chr9 26279038 26279571 -115991873 - LTR49-int LTR ERV1 -3059 3272 1211 601 250 59 7 chr9 26279571 26279723 -115991721 - MER34C LTR ERV1 -181 404 245 535 184 28 127 chr9 26279725 26279937 -115991507 - LTR49-int LTR ERV1 -4067 1056 866 192 77 0 0 chr9 26279952 26279978 -115991466 + (CAA)n Simple_repeat Simple_repeat 2 27 0 831 194 9 13 chr9 26280064 26280237 -115991207 - LTR49-int LTR ERV1 -2790 2090 1380 2322 198 52 25 chr9 26280347 26281163 -115990281 - LTR49-int LTR ERV1 -3268 1612 516 1860 191 19 25 chr9 26281184 26281614 -115989830 - LTR49-int LTR ERV1 -4617 1329 1 565 217 14 14 chr9 26281616 26281754 -115989690 - LTR49 LTR ERV1 0 595 458 337 222 13 52 chr9 26282672 26282790 -115988654 - MER101B LTR ERV1 -1 538 361 1262 178 13 13 chr9 26282962 26283192 -115988252 - MER101B LTR ERV1 -340 230 1 257 271 0 34 chr9 26283549 26283608 -115987836 - MER2 DNA MER2_type 0 345 289 2296 183 23 72 chr9 26283608 26284208 -115987236 - L1MB7 LINE L1 -87 6097 5527 231 167 0 0 chr9 26284317 26284359 -115987085 + (TG)n Simple_repeat Simple_repeat 1 42 0 1513 191 9 38 chr9 26285029 26285348 -115986096 - AluJo SINE Alu -2 310 1 23 92 0 0 chr9 26336467 26336532 -115934912 + AT_rich Low_complexity Low_complexity 1 65 0 7292 45 0 3 chr9 26336563 26337638 -115933806 - L1PA5 LINE L1 -1 6153 5082 4608 48 5 0 chr9 26337643 26338221 -115933223 - L1PA5 LINE L1 -1171 4975 4395 21979 64 4 0 chr9 26338222 26341102 -115930342 + L1P LINE L1 690 3580 -2566 332 318 11 45 chr9 26341991 26342170 -115929274 + GA-rich Low_complexity Low_complexity 5 177 0 225 0 0 0 chr9 26342455 26342480 -115928964 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 7043 31 1 0 chr9 26342480 26343312 -115928132 - L1PA3 LINE L1 -10 6145 5313 12258 25 2 0 chr9 26343312 26344773 -115926671 + L1PA3 LINE L1 3847 5310 -836 516 282 100 6 chr9 26344773 26344943 -115926501 + MER5A DNA MER1_type 4 189 0 1091 224 133 23 chr9 26345056 26345448 -115925996 - MER63B DNA MER1_type -1 435 1 270 116 0 0 chr9 26345691 26345734 -115925710 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 1458 206 11 4 chr9 26345739 26346020 -115925424 - AluJo SINE Alu -25 287 5 2369 72 3 3 chr9 26346059 26346366 -115925078 + AluYb8 SINE Alu 1 307 -11 6358 79 28 0 chr9 26346366 26347505 -115923939 + L1PA7 LINE L1 4985 6148 -6 31 58 0 0 chr9 26347745 26347797 -115923647 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr9 26348202 26348224 -115923220 + AT_rich Low_complexity Low_complexity 1 22 0 31 82 0 0 chr9 26348412 26348485 -115922959 + AT_rich Low_complexity Low_complexity 1 73 0 296 62 0 21 chr9 26348557 26348605 -115922839 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 7082 11 0 1 chr9 26348605 26349407 -115922037 - L1PA2 LINE L1 -16 6139 5339 234 0 0 0 chr9 26350059 26350085 -115921359 + (CAA)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr9 26350098 26350123 -115921321 + (CA)n Simple_repeat Simple_repeat 2 26 0 195 349 82 14 chr9 26350421 26350464 -115920980 + L2 LINE L2 3158 3197 -116 345 24 0 0 chr9 26350464 26350506 -115920938 + (TTG)n Simple_repeat Simple_repeat 2 43 0 195 349 82 14 chr9 26350506 26350608 -115920836 + L2 LINE L2 3197 3313 0 597 265 63 34 chr9 26351796 26352034 -115919410 - MIR SINE MIR -14 248 4 363 192 0 0 chr9 26352303 26352376 -115919068 + (TA)n Simple_repeat Simple_repeat 1 73 0 1978 120 4 0 chr9 26352376 26352650 -115918794 - AluSc SINE Alu -32 277 3 396 283 133 6 chr9 26352652 26352818 -115918626 - MIR SINE MIR -58 204 18 1417 283 99 29 chr9 26352914 26353592 -115917852 + L1ME3A LINE L1 5436 6168 -2 393 299 224 10 chr9 26354372 26354573 -115916871 + MIR SINE MIR 19 262 0 3140 118 10 6 chr9 26356121 26356612 -115914832 - L1PB1 LINE L1 -2 6149 5657 2123 118 16 41 chr9 26356874 26357238 -115914206 + THE1C LTR MaLR 19 373 -2 1178 276 27 20 chr9 26358150 26358592 -115912852 - L1ME3A LINE L1 -196 5974 5530 1251 278 127 52 chr9 26358917 26359550 -115911894 - L1ME3A LINE L1 -1460 4686 4102 3094 181 28 21 chr9 26359550 26360225 -115911219 - L1MB3 LINE L1 -2 6181 5502 1251 278 127 52 chr9 26360225 26361252 -115910192 - L1ME3A LINE L1 -2044 4102 2900 23 0 0 0 chr9 26362869 26362892 -115908552 + AT_rich Low_complexity Low_complexity 1 23 0 665 272 98 34 chr9 26365336 26365571 -115905873 + MIR SINE MIR 7 256 -6 189 337 0 23 chr9 26366699 26366785 -115904659 + MIR SINE MIR 178 261 -1 255 61 0 0 chr9 26367619 26367652 -115903792 + (TA)n Simple_repeat Simple_repeat 2 34 0 491 347 43 86 chr9 26367702 26368123 -115903321 + L2 LINE L2 2865 3267 -5 2027 126 3 0 chr9 26368529 26368864 -115902580 + AluSx SINE Alu 1 336 0 1238 119 0 6 chr9 26368864 26369074 -115902370 + AluSq SINE Alu 110 318 0 21 0 0 0 chr9 26369836 26369857 -115901587 + AT_rich Low_complexity Low_complexity 1 21 0 399 277 122 34 chr9 26370310 26370458 -115900986 - MIR SINE MIR -13 249 89 944 336 78 10 chr9 26370580 26371068 -115900376 + L2 LINE L2 2035 2555 -759 241 299 159 9 chr9 26371347 26371454 -115899990 + L2 LINE L2 3142 3264 -8 198 0 0 0 chr9 26371644 26371666 -115899778 + (T)n Simple_repeat Simple_repeat 1 22 0 28 0 0 0 chr9 26372652 26372680 -115898764 + AT_rich Low_complexity Low_complexity 1 28 0 1364 208 39 29 chr9 26372823 26373131 -115898313 - AluJb SINE Alu -1 311 1 2137 121 3 13 chr9 26373152 26373459 -115897985 - AluSx SINE Alu -8 304 1 242 128 26 0 chr9 26374071 26374110 -115897334 + L2 LINE L2 3263 3302 -11 516 297 88 74 chr9 26375005 26375507 -115895937 + HAL1 LINE L1 4 512 -1995 1606 251 142 57 chr9 26375675 26376550 -115894894 + HAL1 LINE L1 750 1698 -809 379 328 128 10 chr9 26376752 26376947 -115894497 - L3b LINE CR1 -53 1530 1313 218 191 0 0 chr9 26377000 26377042 -115894402 + CT-rich Low_complexity Low_complexity 2 43 0 795 11 0 0 chr9 26377107 26377199 -115894245 - L1PA3 LINE L1 -3 6152 6061 27 87 0 0 chr9 26377639 26377708 -115893736 + AT_rich Low_complexity Low_complexity 1 69 0 234 220 0 0 chr9 26379483 26379542 -115891902 + (TA)n Simple_repeat Simple_repeat 2 60 0 431 241 56 9 chr9 26379684 26379792 -115891652 - MIR SINE MIR -103 159 47 311 305 66 13 chr9 26381451 26381602 -115889842 - L2 LINE L2 -106 3207 3049 400 306 65 32 chr9 26383025 26383211 -115888233 - MIR SINE MIR -1 261 70 22 0 0 0 chr9 26383530 26383552 -115887892 + AT_rich Low_complexity Low_complexity 1 22 0 372 254 113 0 chr9 26384248 26384264 -115887180 - L1MA10 LINE L1 -7 6327 6312 1082 224 68 60 chr9 26384264 26384539 -115886905 - L1ME1 LINE L1 -14 6152 5870 1916 173 0 0 chr9 26384539 26384834 -115886610 + AluSx SINE Alu 2 296 -16 1082 224 68 60 chr9 26384834 26385026 -115886418 - L1ME1 LINE L1 -296 5870 5681 2315 128 47 11 chr9 26385071 26385431 -115886013 + THE1C LTR MaLR 3 375 0 9434 138 32 14 chr9 26385431 26386980 -115884464 + THE1C-int LTR MaLR 1 1577 -3 2008 145 56 11 chr9 26386984 26387342 -115884102 + THE1C LTR MaLR 2 375 0 21 0 0 0 chr9 26388502 26388523 -115882921 + AT_rich Low_complexity Low_complexity 1 21 0 434 61 15 0 chr9 26389032 26389098 -115882346 + (CA)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr9 26389605 26389628 -115881816 + AT_rich Low_complexity Low_complexity 1 23 0 229 291 0 0 chr9 26389815 26389870 -115881574 - MIR3 SINE MIR -54 154 100 202 146 24 0 chr9 26390468 26390509 -115880935 + (TA)n Simple_repeat Simple_repeat 2 43 0 295 284 110 40 chr9 26390517 26390707 -115880737 - MIR SINE MIR -57 205 4 559 303 194 46 chr9 26392439 26392806 -115878638 + L2 LINE L2 2831 3251 -62 185 283 50 17 chr9 26392948 26393008 -115878436 - MIR SINE MIR -95 167 106 3330 193 19 10 chr9 26393008 26393699 -115877745 + L1PB4 LINE L1 5458 6154 -2 22 35 0 0 chr9 26393777 26393806 -115877638 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 26394072 26394095 -115877349 + AT_rich Low_complexity Low_complexity 1 23 0 1776 208 62 11 chr9 26394478 26394915 -115876529 - MER65C LTR ERV1 0 461 3 557 182 19 13 chr9 26397908 26398062 -115873382 + CT-rich Low_complexity Low_complexity 2 156 0 19419 48 14 1 chr9 26398947 26401431 -115870013 - L1P LINE L1 -1946 4200 1685 1351 37 0 0 chr9 26401430 26401593 -115869851 + L1P LINE L1 4196 4358 -1788 * 209 361 71 59 chr9 26401755 26401993 -115869451 + MIR SINE MIR 1 241 -21 22 0 0 0 chr9 26402133 26402155 -115869289 + AT_rich Low_complexity Low_complexity 1 22 0 185 350 41 0 chr9 26402871 26402968 -115868476 + L3 LINE CR1 304 404 -1173 622 192 0 0 chr9 26403356 26403460 -115867984 + MER33 DNA MER1_type 6 109 -215 669 177 39 0 chr9 26404763 26404893 -115866551 + MER3 DNA MER1_type 40 127 -82 1370 172 89 11 chr9 26404895 26405243 -115866201 + MER3 DNA MER1_type 2238 2612 0 617 225 0 21 chr9 26405536 26405678 -115865766 - FLAM_C SINE Alu -4 139 1 23 33 0 0 chr9 26405678 26405708 -115865736 + AT_rich Low_complexity Low_complexity 1 30 0 332 257 43 21 chr9 26406032 26406172 -115865272 - L1ME4a LINE L1 -5 6116 5974 223 295 67 57 chr9 26407572 26407677 -115863767 - L2 LINE L2 -5 3308 3203 201 227 0 23 chr9 26407773 26407817 -115863627 - L2 LINE L2 -212 3060 3018 192 372 60 70 chr9 26407807 26408221 -115863223 - L2 LINE L2 -17 3255 2846 * 324 333 0 9 chr9 26408649 26408757 -115862687 + MIR SINE MIR 50 156 -106 389 347 91 56 chr9 26408843 26409382 -115862062 - L2 LINE L2 -955 2359 1802 2078 97 13 3 chr9 26409576 26409874 -115861570 + AluSg SINE Alu 1 301 -9 303 122 0 0 chr9 26410180 26410229 -115861215 + (CA)n Simple_repeat Simple_repeat 2 50 0 4451 202 25 8 chr9 26410800 26412057 -115859387 - L1PB1 LINE L1 -655 5496 4216 4347 110 12 3 chr9 26412058 26412706 -115858738 + L1PB1 LINE L1 5497 6150 -1 2701 3 0 0 chr9 26413326 26413620 -115857824 - AluYa5 SINE Alu -17 294 1 761 211 0 0 chr9 26413623 26413765 -115857679 - FLAM_C SINE Alu -1 142 1 27 29 0 0 chr9 26413968 26414002 -115857442 + AT_rich Low_complexity Low_complexity 1 34 0 1985 128 10 0 chr9 26414150 26414439 -115857005 - AluSq SINE Alu -21 292 1 225 159 0 0 chr9 26414471 26414515 -115856929 + (TA)n Simple_repeat Simple_repeat 2 45 0 289 298 88 25 chr9 26414568 26414806 -115856638 - L1M4 LINE L1 -3162 2984 2732 563 274 79 19 chr9 26414940 26415155 -115856289 - MLT1J2 LTR MaLR -220 230 3 342 320 101 0 chr9 26415485 26415663 -115855781 - L1M4 LINE L1 -3816 2330 2135 346 350 106 18 chr9 26416934 26417491 -115853953 + L1MC4a LINE L1 5303 5908 -1900 204 123 77 62 chr9 26417694 26417759 -115853685 + A-rich Low_complexity Low_complexity 5 70 0 218 306 24 47 chr9 26418188 26418273 -115853171 + MIR SINE MIR 6 88 -174 382 253 157 30 chr9 26418398 26418564 -115852880 + MIR SINE MIR 50 236 -26 233 383 16 8 chr9 26418933 26419061 -115852383 + MIR3 SINE MIR 77 205 -3 324 0 0 0 chr9 26419356 26419392 -115852052 + (T)n Simple_repeat Simple_repeat 1 36 0 522 0 0 0 chr9 26422287 26422345 -115849099 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 2044 121 7 10 chr9 26422346 26422816 -115848628 - AluSp SINE Alu 0 313 3 333 362 0 16 chr9 26426708 26426835 -115844609 - MIR SINE MIR -65 143 19 372 342 61 0 chr9 26427236 26427432 -115844012 - MIR SINE MIR 0 262 55 25 0 0 0 chr9 26428281 26428306 -115843138 + AT_rich Low_complexity Low_complexity 1 25 0 279 250 0 0 chr9 26429767 26429819 -115841625 - L2 LINE L2 -7 3306 3255 309 51 0 0 chr9 26429952 26429991 -115841453 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr9 26430015 26430038 -115841406 + AT_rich Low_complexity Low_complexity 1 23 0 399 185 22 43 chr9 26430408 26430500 -115840944 - MER63 DNA MER1_type -82 754 39 492 260 31 52 chr9 26432097 26432289 -115839155 + MIR SINE MIR 75 262 0 682 209 128 5 chr9 26432470 26432657 -115838787 + MER6B DNA MER2_type 1 210 0 206 284 87 43 chr9 26432713 26432967 -115838477 + L2 LINE L2 1917 2181 -1133 315 311 67 28 chr9 26434299 26434479 -115836965 - MIR SINE MIR -73 189 3 550 349 133 26 chr9 26434949 26435628 -115835816 - L2 LINE L2 0 3272 2527 456 264 18 42 chr9 26435898 26436065 -115835379 + MIR SINE MIR 2 164 -98 994 350 63 35 chr9 26436119 26436751 -115834693 - L2 LINE L2 -959 2355 1706 380 204 30 106 chr9 26437316 26437448 -115833996 - L2 LINE L2 -17 3296 3175 292 320 195 30 chr9 26438524 26438724 -115832720 + MIR SINE MIR 3 235 -27 192 214 54 54 chr9 26438690 26438746 -115832698 + L2 LINE L2 3207 3262 -10 * 2361 156 36 5 chr9 26439295 26439737 -115831707 - L1PA13 LINE L1 -2 6161 5706 492 299 76 11 chr9 26441654 26441838 -115829606 - L2 LINE L2 0 3313 3118 617 256 12 23 chr9 26442233 26442405 -115829039 + MER63A DNA MER1_type 41 210 0 1751 249 48 38 chr9 26442683 26443265 -115828179 + MLT1G LTR MaLR 1 588 -2 366 259 80 82 chr9 26443822 26444151 -115827293 - MLT1H LTR MaLR -4 545 125 2771 280 76 41 chr9 26444850 26447164 -115824280 - L1ME2 LINE L1 0 6233 3818 2461 54 0 0 chr9 26447165 26447461 -115823983 - AluY SINE Alu -14 297 2 1287 79 69 0 chr9 26447481 26447670 -115823774 - L1PA11 LINE L1 -2 6172 5971 322 311 231 11 chr9 26447670 26447754 -115823690 - L1ME2 LINE L1 -4419 1977 1913 1892 170 25 22 chr9 26447754 26448118 -115823326 - MLT1A1 LTR MaLR 0 365 1 322 311 231 11 chr9 26448118 26448297 -115823147 - L1ME2 LINE L1 -4483 1913 1656 337 336 124 12 chr9 26448335 26448576 -115822868 - L1ME2 LINE L1 -5257 948 681 221 290 65 19 chr9 26449862 26449969 -115821475 + MIR SINE MIR 96 207 -55 3086 45 0 0 chr9 26450147 26450524 -115820920 - L1PA5 LINE L1 -8 6146 5770 33883 34 17 1 chr9 26450536 26456564 -115814880 - L1PA2 LINE L1 0 6155 3 1344 55 2 3 chr9 26456564 26456743 -115814701 - L1PA5 LINE L1 -371 5783 5607 208 300 17 0 chr9 26460240 26460300 -115811144 + MIR SINE MIR 87 147 -61 3766 153 27 2 chr9 26460862 26461494 -115809950 - Tigger1 DNA MER2_type 0 2418 1771 8822 151 39 10 chr9 26461494 26463077 -115808367 - Tigger1 DNA MER2_type -788 1630 2 662 204 0 0 chr9 26464106 26464214 -115807230 + Tigger3(Golem) DNA MER2_type 2 109 -2920 * 3794 149 67 12 chr9 26464213 26464959 -115806485 + Tigger3(Golem) DNA MER2_type 2241 3027 -2 213 39 0 0 chr9 26465240 26465266 -115806178 + (TA)n Simple_repeat Simple_repeat 1 26 0 382 288 112 36 chr9 26465401 26465984 -115805460 + L1M4 LINE L1 2884 3510 -2636 594 287 162 14 chr9 26466029 26466586 -115804858 + L1M4 LINE L1 4326 4964 -1182 24 0 0 0 chr9 26467122 26467146 -115804298 + AT_rich Low_complexity Low_complexity 1 24 0 210 282 153 24 chr9 26468726 26468850 -115802594 + MER5B DNA MER1_type 38 177 -1 24 53 0 0 chr9 26469318 26469356 -115802088 + AT_rich Low_complexity Low_complexity 1 38 0 214 309 0 0 chr9 26469671 26469726 -115801718 + (TA)n Simple_repeat Simple_repeat 1 55 0 249 401 18 6 chr9 26470422 26470589 -115800855 - L2 LINE L2 -1268 2046 1878 279 79 0 0 chr9 26471167 26471205 -115800239 + (T)n Simple_repeat Simple_repeat 1 38 0 267 31 0 0 chr9 26471357 26471389 -115800055 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1930 122 0 0 chr9 26471402 26471673 -115799771 - AluSg SINE Alu -39 271 1 364 311 110 28 chr9 26472087 26472405 -115799039 - L1MC4 LINE L1 -369 7673 7330 306 0 0 0 chr9 26472497 26472531 -115798913 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 264 242 24 40 chr9 26472553 26472677 -115798767 - L1MC5 LINE L1 -738 7223 7102 26 30 0 0 chr9 26473385 26473418 -115798026 + AT_rich Low_complexity Low_complexity 1 33 0 535 280 106 32 chr9 26473912 26474130 -115797314 - L2 LINE L2 -639 2675 2442 27 100 0 0 chr9 26474362 26474452 -115796992 + AT_rich Low_complexity Low_complexity 1 90 0 358 311 77 26 chr9 26474461 26474734 -115796710 - HAL1 LINE L1 -211 2296 2010 242 256 188 8 chr9 26474854 26474944 -115796500 - HAL1 LINE L1 -709 1798 1726 732 232 57 0 chr9 26474944 26475121 -115796323 - MER5A DNA MER1_type -1 188 2 242 256 188 8 chr9 26475121 26475163 -115796281 - HAL1 LINE L1 -781 1726 1642 189 107 0 0 chr9 26475429 26475457 -115795987 + (CAA)n Simple_repeat Simple_repeat 1 28 0 311 273 83 75 chr9 26475713 26476061 -115795383 - HAL1 LINE L1 -1045 1462 1112 210 71 0 0 chr9 26476454 26476482 -115794962 + (T)n Simple_repeat Simple_repeat 1 28 0 230 315 25 74 chr9 26476569 26476731 -115794713 - HAL1 LINE L1 -1871 636 483 448 292 17 17 chr9 26477022 26477142 -115794302 + L2 LINE L2 3150 3269 -3 342 0 0 0 chr9 26478056 26478094 -115793350 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 303 21 7 chr9 26478887 26479032 -115792412 + L2 LINE L2 3167 3313 0 236 196 0 0 chr9 26479514 26479560 -115791884 + (CATA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr9 26480486 26480515 -115790929 + AT_rich Low_complexity Low_complexity 1 29 0 366 274 183 11 chr9 26481232 26481407 -115790037 + MIR SINE MIR 58 262 0 261 313 21 0 chr9 26482556 26482652 -115788792 - L3 LINE CR1 -573 1004 907 209 244 0 24 chr9 26484948 26485030 -115786414 + CT-rich Low_complexity Low_complexity 3 82 0 2043 84 9 75 chr9 26485154 26485474 -115785970 - AluSc SINE Alu -10 299 1 267 259 0 0 chr9 26486028 26486086 -115785358 + (TG)n Simple_repeat Simple_repeat 1 58 0 247 352 22 0 chr9 26486542 26486633 -115784811 + MIR3 SINE MIR 67 159 -49 223 229 21 0 chr9 26486850 26486898 -115784546 + MIR3 SINE MIR 150 198 -10 320 346 149 5 chr9 26488538 26488726 -115782718 + MIR SINE MIR 13 227 -35 876 222 9 47 chr9 26488823 26489035 -115782409 + MER20 DNA MER1_type 16 219 0 27 73 0 0 chr9 26492691 26492746 -115778698 + AT_rich Low_complexity Low_complexity 1 55 0 311 351 48 25 chr9 26493443 26493654 -115777790 - MIR SINE MIR -39 223 5 507 318 91 9 chr9 26494236 26494456 -115776988 - MIR SINE MIR -6 256 19 3305 180 109 9 chr9 26494712 26495463 -115775981 - LTR1B LTR ERV1 0 826 1 32 67 0 0 chr9 26495471 26495531 -115775913 + AT_rich Low_complexity Low_complexity 1 60 0 216 333 145 13 chr9 26497223 26497382 -115774062 - MIR SINE MIR -19 243 64 21 57 0 0 chr9 26498111 26498146 -115773298 + AT_rich Low_complexity Low_complexity 1 35 0 218 327 0 0 chr9 26499264 26499319 -115772125 + MIR SINE MIR 40 94 -114 1376 306 63 39 chr9 26500037 26500677 -115770767 + L2 LINE L2 2035 2690 -624 685 278 64 0 chr9 26500677 26500850 -115770594 - MER5A DNA MER1_type -2 187 4 450 299 162 0 chr9 26500869 26501023 -115770421 + MER5A DNA MER1_type 9 187 -2 853 288 65 64 chr9 26501068 26501686 -115769758 + L2 LINE L2 2695 3313 0 929 179 0 12 chr9 26502946 26503108 -115768336 + FRAM SINE Alu 6 165 -11 296 339 0 27 chr9 26503747 26503859 -115767585 + MIR3 SINE MIR 88 196 -12 5953 101 21 2 chr9 26504088 26505743 -115765701 + L1PA14 LINE L1 4469 6159 -2 5269 186 68 17 chr9 26507524 26509654 -115761790 - L1MA9 LINE L1 -5 6307 4061 3432 221 50 14 chr9 26509651 26510627 -115760817 - L1MA9 LINE L1 -2315 3831 2821 * 249 117 83 17 chr9 26510636 26510696 -115760748 - L1PA8 LINE L1 0 6172 6109 * 16238 136 76 14 chr9 26510683 26513482 -115757962 - L1PA10 LINE L1 -80 6403 3304 1753 152 56 0 chr9 26513482 26513752 -115757692 - AluSg SINE Alu -23 287 3 16238 136 76 14 chr9 26513752 26514743 -115756701 - L1PA10 LINE L1 -3179 3304 2376 * 41239 59 6 7 chr9 26514738 26520899 -115750545 - L1PA4 LINE L1 0 6155 1 4440 222 19 54 chr9 26520900 26522559 -115748885 - L1PA10 LINE L1 -4070 2391 771 2522 195 46 4 chr9 26522564 26523045 -115748399 - L1PA10 LINE L1 -5372 503 3 1918 242 45 44 chr9 26523046 26524071 -115747373 - L1M4c LINE L1 -3315 2719 1677 408 287 11 0 chr9 26524146 26524233 -115747211 - Tigger7 DNA MER2_type 0 2491 2404 1799 113 25 3 chr9 26524233 26524515 -115746929 + MER57-int LTR ERV1 4521 4808 -2729 6913 221 65 20 chr9 26524528 26526078 -115745366 + MER52A LTR ERV1 6 1755 0 601 135 95 40 chr9 26526096 26526244 -115745200 - Tigger7 DNA MER2_type -104 2387 2232 297 254 0 0 chr9 26526242 26526297 -115745147 - Tigger7 DNA MER2_type -678 55 1 * 2651 267 73 17 chr9 26526297 26527776 -115743668 - L1M4c LINE L1 -4523 1513 322 1940 309 92 10 chr9 26527782 26528487 -115742957 - L1 LINE L1 -5181 1122 360 200 94 0 31 chr9 26528498 26528530 -115742914 + (CTTTA)n Simple_repeat Simple_repeat 3 33 0 232 274 162 17 chr9 26528989 26529106 -115742338 - MIR SINE MIR -17 245 112 1669 117 17 0 chr9 26529116 26529347 -115742097 + AluSq SINE Alu 1 235 -78 222 62 0 0 chr9 26529367 26529399 -115742045 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2501 253 167 25 chr9 26530141 26531582 -115739862 - L1M4 LINE L1 -873 5342 3697 5813 26 4 0 chr9 26531584 26532268 -115739176 + L1PA4 LINE L1 5469 6155 0 4118 271 78 35 chr9 26532293 26532414 -115739030 - L1MEc LINE L1 -3477 2738 2624 1448 221 54 20 chr9 26532414 26532767 -115738677 - MLT1A1 LTR MaLR 0 365 1 4118 271 78 35 chr9 26532767 26532911 -115738533 - L1MEc LINE L1 -3591 2624 2488 771 264 93 35 chr9 26532911 26533256 -115738188 - MLT1A1 LTR MaLR 0 365 1 4118 271 78 35 chr9 26533256 26533822 -115737622 - L1MEc LINE L1 -3727 2488 1948 2082 106 7 17 chr9 26533822 26534115 -115737329 + AluSg SINE Alu 1 290 -20 4118 271 78 35 chr9 26534115 26535684 -115735760 - L1MEc LINE L1 -4267 1948 254 1757 203 6 103 chr9 26535684 26536191 -115735253 - LTR22A LTR ERVK 0 458 1 4118 271 78 35 chr9 26536191 26536425 -115735019 - L1MEc LINE L1 -5961 254 31 3129 209 34 17 chr9 26536577 26537334 -115734110 - L1MB8 LINE L1 0 6178 5409 392 263 101 86 chr9 26537608 26537817 -115733627 + MER58C DNA MER1_type 2 213 -2 41326 61 3 7 chr9 26538836 26545016 -115726428 - L1PA4 LINE L1 -3 6152 1 1949 146 7 7 chr9 26545019 26545320 -115726124 - AluSx SINE Alu -11 301 1 2280 102 3 0 chr9 26546457 26546779 -115724665 - AluSx SINE Alu 0 323 1 435 257 14 36 chr9 26547345 26547485 -115723959 + L2 LINE L2 2651 2787 -527 503 285 119 22 chr9 26547495 26547814 -115723630 - MLT1I LTR MaLR 0 409 60 578 329 126 4 chr9 26547866 26548097 -115723347 + L2 LINE L2 2812 3070 -243 290 164 73 0 chr9 26548111 26548166 -115723278 - MER58 DNA MER1_type -122 219 161 385 287 28 19 chr9 26548239 26548347 -115723097 + L2 LINE L2 3193 3301 -12 360 320 116 7 chr9 26548452 26548599 -115722845 - MIR SINE MIR -19 243 81 462 227 296 0 chr9 26548824 26548956 -115722488 - MER5B DNA MER1_type -5 173 3 2921 100 37 2 chr9 26550997 26551426 -115720018 - MLT2A1 LTR ERVL 0 444 1 792 285 72 49 chr9 26551558 26551905 -115719539 + LTR33 LTR ERVL 1 355 -166 336 170 0 0 chr9 26551904 26551957 -115719487 - Alu SINE Alu -249 53 1 * 1456 195 18 28 chr9 26552218 26552500 -115718944 + AluJo SINE Alu 1 279 -33 2691 58 17 0 chr9 26552500 26552845 -115718599 + L1PA7 LINE L1 5804 6154 0 288 0 0 0 chr9 26552944 26552976 -115718468 + (CA)n Simple_repeat Simple_repeat 2 33 0 214 178 0 0 chr9 26553644 26553689 -115717755 + T-rich Low_complexity Low_complexity 1 45 0 2155 100 10 3 chr9 26554480 26554790 -115716654 - AluSq SINE Alu -1 312 1 742 217 11 5 chr9 26554880 26555064 -115716380 - L1MB2 LINE L1 0 6171 5987 2169 113 0 0 chr9 26555390 26555692 -115715752 - AluSc SINE Alu -7 302 1 213 184 20 20 chr9 26555812 26555861 -115715583 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 316 278 0 46 chr9 26556043 26556151 -115715293 + MIR SINE MIR 159 261 -1 821 214 10 36 chr9 26557118 26557310 -115714134 - MER5A DNA MER1_type -1 188 2 397 206 0 0 chr9 26557675 26557748 -115713696 + MER6 DNA MER2_type 143 215 -390 23 86 0 0 chr9 26558104 26558162 -115713282 + AT_rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr9 26559300 26559335 -115712109 + AT_rich Low_complexity Low_complexity 1 35 0 353 333 81 24 chr9 26559930 26560140 -115711304 - LTR16A LTR ERVL -6 444 223 538 285 113 0 chr9 26560149 26560335 -115711109 - HERV16 LTR ERVL -3062 1934 1728 209 343 7 68 chr9 26560665 26560811 -115710633 + MIR SINE MIR 86 222 -40 2148 120 0 0 chr9 26561670 26561971 -115709473 - AluSx SINE Alu -11 301 1 2182 87 0 3 chr9 26563568 26563868 -115707576 + AluSg SINE Alu 1 299 -11 21 36 0 0 chr9 26564033 26564061 -115707383 + AT_rich Low_complexity Low_complexity 1 28 0 1279 259 141 13 chr9 26564139 26565305 -115706139 + L1MD2 LINE L1 1692 2973 -3242 341 316 14 73 chr9 26565309 26565527 -115705917 + Zaphod DNA AcHobo 55 259 -3772 588 274 75 24 chr9 26565633 26565845 -115705599 + Zaphod DNA AcHobo 438 660 -3371 260 264 13 71 chr9 26565889 26566044 -115705400 + Zaphod DNA AcHobo 1868 2013 -2018 2382 230 60 33 chr9 26566066 26566987 -115704457 + Zaphod DNA AcHobo 2454 3399 -632 437 247 184 47 chr9 26567035 26567337 -115704107 + Zaphod DNA AcHobo 3614 3976 -55 1409 177 47 13 chr9 26567337 26567654 -115703790 - L1MA9 LINE L1 -10 6302 5975 437 247 184 47 chr9 26567654 26567715 -115703729 + Zaphod DNA AcHobo 3976 4027 -4 182 266 89 13 chr9 26568397 26568476 -115702968 - L2 LINE L2 -40 3273 3189 22 35 0 0 chr9 26568672 26568701 -115702743 + AT_rich Low_complexity Low_complexity 1 29 0 389 297 48 21 chr9 26569419 26569564 -115701880 + MIR SINE MIR 114 262 0 24 53 0 0 chr9 26570357 26570395 -115701049 + AT_rich Low_complexity Low_complexity 1 38 0 189 147 0 0 chr9 26570402 26570436 -115701008 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 387 60 0 0 chr9 26570461 26570511 -115700933 + (GA)n Simple_repeat Simple_repeat 2 51 0 2744 265 73 23 chr9 26571402 26572751 -115698693 + L1MD2 LINE L1 4086 5505 -730 1046 220 161 24 chr9 26572747 26573156 -115698288 + L1MD2 LINE L1 5710 6174 -254 * 5802 98 31 2 chr9 26573170 26574440 -115697004 + L1PA13 LINE L1 4846 6144 -19 227 317 117 39 chr9 26575274 26575479 -115695965 + MLT1K LTR MaLR 313 533 -55 25 0 0 0 chr9 26576701 26576726 -115694718 + AT_rich Low_complexity Low_complexity 1 25 0 32 67 0 0 chr9 26577149 26577209 -115694235 + AT_rich Low_complexity Low_complexity 1 60 0 22 70 0 0 chr9 26578043 26578086 -115693358 + AT_rich Low_complexity Low_complexity 1 43 0 4804 220 21 53 chr9 26578622 26579847 -115691597 + L1MB8 LINE L1 11 1196 -5663 2463 224 59 5 chr9 26579981 26580994 -115690450 + L1MB8 LINE L1 5658 6729 -260 * 4273 51 0 0 chr9 26580991 26581536 -115689908 - L1P LINE L1 -3677 2469 1925 730 264 34 22 chr9 26581532 26581801 -115689643 + L1MB8 LINE L1 6718 6989 0 * 394 244 101 71 chr9 26581852 26581903 -115689541 + MLT1H LTR MaLR 377 425 -124 1873 115 7 27 chr9 26581903 26582199 -115689245 + AluY SINE Alu 1 290 -21 394 244 101 71 chr9 26582199 26582315 -115689129 + MLT1H LTR MaLR 425 549 0 556 318 20 40 chr9 26582375 26582627 -115688817 - MIR SINE MIR -14 248 2 287 218 90 8 chr9 26582633 26582766 -115688678 - L1ME4a LINE L1 -196 5925 5782 21 0 0 0 chr9 26583034 26583055 -115688389 + AT_rich Low_complexity Low_complexity 1 21 0 1116 259 63 71 chr9 26583261 26583878 -115687566 - L1MC4 LINE L1 -5 8037 7426 197 378 61 0 chr9 26586020 26586102 -115685342 - L2 LINE L2 -5 3267 3181 515 232 34 4 chr9 26586526 26586742 -115684702 + LTR37A LTR ERV1 110 412 -14 1537 81 0 19 chr9 26586838 26587049 -115684395 + AluY SINE Alu 92 298 -13 571 307 50 17 chr9 26587554 26587912 -115683532 - L1ME4a LINE L1 -216 5905 5536 1149 184 19 34 chr9 26589754 26590020 -115681424 - THE1C LTR MaLR -113 262 1 5192 135 6 10 chr9 26590020 26590827 -115680617 - THE1C-int LTR MaLR 0 1580 777 484 307 78 14 chr9 26592071 26592289 -115679155 + MIR SINE MIR 17 248 -14 218 175 0 0 chr9 26592319 26592359 -115679085 + (CCA)n Simple_repeat Simple_repeat 1 40 0 475 320 34 25 chr9 26592650 26592859 -115678585 - MIR SINE MIR -17 245 36 394 71 0 0 chr9 26593204 26593260 -115678184 - L1PB1 LINE L1 -3 6148 6093 371 97 16 0 chr9 26593335 26593397 -115678047 - L1PB1 LINE L1 -6 6145 6083 2530 86 11 0 chr9 26593471 26593822 -115677622 - L1PB1 LINE L1 -6 6145 5791 309 77 0 0 chr9 26593822 26593861 -115677583 + (TG)n Simple_repeat Simple_repeat 1 39 0 523 229 29 0 chr9 26593861 26594036 -115677408 + (TA)n Simple_repeat Simple_repeat 1 180 0 473 218 41 0 chr9 26594050 26594220 -115677224 + (TA)n Simple_repeat Simple_repeat 2 178 0 3487 167 15 7 chr9 26594229 26594240 -115677204 - L1PB1 LINE L1 -360 5791 5782 180 0 0 0 chr9 26594240 26594260 -115677184 + (CA)n Simple_repeat Simple_repeat 2 21 0 3487 167 15 7 chr9 26594260 26595280 -115676164 - L1PB1 LINE L1 -369 5782 4753 342 353 35 17 chr9 26597148 26597321 -115674123 - MIR3 SINE MIR -1 207 32 225 83 0 0 chr9 26599304 26599340 -115672104 + (CA)n Simple_repeat Simple_repeat 2 37 0 1133 245 116 48 chr9 26599625 26599864 -115671580 + Charlie2 DNA MER1_type 2061 2282 -580 2608 33 0 0 chr9 26599864 26600166 -115671278 + AluY SINE Alu 1 302 -9 1133 245 116 48 chr9 26600166 26600676 -115670768 + Charlie2 DNA MER1_type 2282 2861 -1 772 264 82 58 chr9 26600864 26600971 -115670473 + LTR16A LTR ERVL 113 216 -234 2032 125 63 34 chr9 26600971 26601322 -115670122 + THE1B LTR MaLR 1 361 -3 772 264 82 58 chr9 26601322 26601544 -115669900 + LTR16A LTR ERVL 216 450 0 381 276 12 0 chr9 26603136 26603234 -115668210 + MIR SINE MIR 50 147 -62 449 362 122 19 chr9 26603267 26603684 -115667760 - L2 LINE L2 -18 3295 2836 1194 244 95 65 chr9 26604315 26604352 -115667092 - LTR40a LTR ERVL 0 519 485 1483 234 42 18 chr9 26604352 26604733 -115666711 + MLT1B LTR MaLR 1 390 0 1194 244 95 65 chr9 26604733 26604754 -115666690 - LTR40a LTR ERVL -34 485 466 5350 67 56 7 chr9 26604754 26605484 -115665960 + MER4E LTR ERV1 1 766 0 1194 244 95 65 chr9 26605484 26605928 -115665516 - LTR40a LTR ERVL -53 466 1 21 57 0 0 chr9 26606073 26606108 -115665336 + AT_rich Low_complexity Low_complexity 1 35 0 2187 175 204 88 chr9 26606384 26607192 -115664252 - LTR28 LTR ERV1 0 1020 92 2188 109 0 3 chr9 26607192 26607494 -115663950 + AluSg1 SINE Alu 1 301 -8 2187 175 204 88 chr9 26607494 26607599 -115663845 - LTR28 LTR ERV1 -928 92 1 754 246 41 0 chr9 26608663 26608834 -115662610 + MER45A DNA AcHobo 1 178 0 30 89 0 0 chr9 26609064 26609143 -115662301 + AT_rich Low_complexity Low_complexity 1 79 0 24 32 0 0 chr9 26612033 26612064 -115659380 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr9 26612901 26612929 -115658515 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 26612993 26613023 -115658421 + AT_rich Low_complexity Low_complexity 1 30 0 2014 152 97 66 chr9 26613871 26614357 -115657087 + LTR1 LTR ERV1 28 528 -257 4512 139 113 92 chr9 26614357 26615910 -115655534 + pTR5 LTR ERV1 746 2438 0 1562 146 43 4 chr9 26615913 26616167 -115655277 + LTR1 LTR ERV1 522 785 0 320 353 90 16 chr9 26616646 26616890 -115654554 - MIR SINE MIR 0 262 1 568 223 82 35 chr9 26618045 26618301 -115653143 - LTR37B LTR ERV1 -4 464 197 27 29 0 0 chr9 26618390 26618424 -115653020 + AT_rich Low_complexity Low_complexity 1 34 0 319 221 121 34 chr9 26618424 26618573 -115652871 - LTR37B LTR ERV1 -306 162 1 21 0 0 0 chr9 26618761 26618782 -115652662 + AT_rich Low_complexity Low_complexity 1 21 0 861 78 0 0 chr9 26620201 26620317 -115651127 + L1PA8 LINE L1 5800 5915 -257 2483 96 11 8 chr9 26620605 26620971 -115650473 + L1PA8 LINE L1 5800 6166 -6 189 0 0 0 chr9 26621577 26621598 -115649846 + (T)n Simple_repeat Simple_repeat 1 21 0 340 248 0 13 chr9 26622366 26622490 -115648954 - L1MCa LINE L1 -1339 6983 1995 28 29 0 0 chr9 26622619 26622654 -115648790 + AT_rich Low_complexity Low_complexity 1 35 0 246 310 112 36 chr9 26622664 26623022 -115648422 - L1MC/D LINE L1 -1893 5915 5531 30 0 0 0 chr9 26623209 26623239 -115648205 + AT_rich Low_complexity Low_complexity 1 30 0 253 352 0 0 chr9 26623449 26623540 -115647904 - MLT1K LTR MaLR -149 439 349 2013 130 33 3 chr9 26624256 26624556 -115646888 - THE1B LTR MaLR 0 364 56 2077 33 4 0 chr9 26624660 26624905 -115646539 - AluY SINE Alu -64 247 2 212 238 0 12 chr9 26625191 26625271 -115646173 + (TA)n Simple_repeat Simple_repeat 2 80 0 285 280 85 8 chr9 26625743 26625861 -115645583 - MER103 DNA DNA 0 166 40 21 0 0 0 chr9 26626026 26626047 -115645397 + AT_rich Low_complexity Low_complexity 1 21 0 4529 130 22 12 chr9 26626200 26626964 -115644480 - L1MA2 LINE L1 0 6304 5533 316 378 70 31 chr9 26627104 26627591 -115643853 - L2 LINE L2 -626 2688 2183 33 43 0 0 chr9 26627591 26627638 -115643806 + AT_rich Low_complexity Low_complexity 1 47 0 432 284 0 22 chr9 26627886 26628020 -115643424 + L2 LINE L2 1525 1655 -1659 1014 235 96 122 chr9 26628075 26628492 -115642952 + MLT2E LTR ERVL 79 484 -144 2597 299 98 34 chr9 26628621 26629961 -115641483 + L2 LINE L2 1888 3293 -20 2023 109 10 7 chr9 26630979 26631273 -115640171 - AluSx SINE Alu -13 299 5 931 70 20 107 chr9 26631578 26631698 -115639746 - L1P4 LINE L1 -733 5432 5336 2248 110 3 0 chr9 26631698 26631999 -115639445 - AluSp SINE Alu -11 302 1 931 70 20 107 chr9 26631999 26632100 -115639344 - L1P4 LINE L1 -829 5336 5228 699 145 78 56 chr9 26632096 26632275 -115639169 + L1 LINE L1 4013 4195 -1951 * 3561 181 31 40 chr9 26632266 26633077 -115638367 + L1P LINE L1 4416 5219 -927 318 214 0 36 chr9 26633073 26633157 -115638287 + HAL1 LINE L1 2427 2507 0 * 1196 153 8 63 chr9 26633384 26633639 -115637805 - MER57A LTR ERV1 -2 401 161 1860 45 0 0 chr9 26633971 26634192 -115637252 - AluY SINE Alu -7 304 84 840 280 63 11 chr9 26634209 26634687 -115636757 - L1M4 LINE L1 -2500 3646 3144 318 288 74 80 chr9 26635075 26635238 -115636206 - MIR SINE MIR -72 190 29 1363 237 164 15 chr9 26635285 26635816 -115635628 - L1ME3A LINE L1 0 6170 5561 263 358 91 17 chr9 26636325 26636557 -115634887 + MIR SINE MIR 8 256 -6 27 100 0 0 chr9 26636586 26636676 -115634768 + AT_rich Low_complexity Low_complexity 1 90 0 337 280 97 0 chr9 26636880 26636973 -115634471 + MIR SINE MIR 63 164 -98 989 243 5 0 chr9 26638302 26638512 -115632932 - AluJo SINE Alu -101 211 1 611 343 86 25 chr9 26638721 26639048 -115632396 + LTR16C LTR ERVL 91 437 -54 22 70 0 0 chr9 26639123 26639166 -115632278 + AT_rich Low_complexity Low_complexity 1 43 0 1626 181 91 6 chr9 26639644 26639977 -115631467 - MLT1A1 LTR MaLR -5 360 3 330 286 208 25 chr9 26640163 26640404 -115631040 + L1M4 LINE L1 4347 4631 -1515 1650 145 0 4 chr9 26740430 26740672 -115530772 + AluSg SINE Alu 55 295 -15 26 30 0 0 chr9 26740797 26740830 -115530614 + AT_rich Low_complexity Low_complexity 1 33 0 336 354 77 48 chr9 26741363 26741739 -115529705 - L2 LINE L2 -3 3310 2924 328 227 39 31 chr9 26741878 26742006 -115529438 - L1MCa LINE L1 -4355 2071 1943 24 67 0 0 chr9 26742200 26742245 -115529199 + AT_rich Low_complexity Low_complexity 1 45 0 1857 133 14 0 chr9 26742648 26742956 -115528488 + AluSx SINE Alu 1 312 0 315 0 0 0 chr9 26742959 26742994 -115528450 + (CA)n Simple_repeat Simple_repeat 2 36 0 2259 155 32 32 chr9 26742995 26743427 -115528017 - Tigger2a DNA MER2_type -1 433 2 197 311 0 0 chr9 26744103 26744164 -115527280 + L2 LINE L2 2205 2265 -1049 8058 112 40 17 chr9 26744166 26745421 -115526023 + HSMAR1 DNA Mariner 4 1287 0 5087 131 20 25 chr9 26746068 26747420 -115524024 - L1PB2 LINE L1 0 6151 4796 1003 225 78 30 chr9 26749855 26750223 -115521221 + MSTC LTR MaLR 3 428 0 219 204 0 20 chr9 26750683 26750732 -115520712 + (TA)n Simple_repeat Simple_repeat 1 48 0 1432 181 15 0 chr9 26752117 26752387 -115519057 - L1MC1 LINE L1 -2 6331 6058 1961 171 19 5 chr9 26752483 26752857 -115518587 - L1MC1 LINE L1 -310 6023 5645 1525 201 28 12 chr9 26752962 26753281 -115518163 + MER44D DNA MER2_type 13 606 -3 2190 129 0 3 chr9 26753523 26753833 -115517611 - AluSx SINE Alu -1 311 3 180 125 0 0 chr9 26753958 26753990 -115517454 + (TA)n Simple_repeat Simple_repeat 2 33 0 321 363 52 15 chr9 26754939 26755074 -115516370 - L2 LINE L2 0 3272 3133 183 80 0 0 chr9 26755087 26755112 -115516332 + (TG)n Simple_repeat Simple_repeat 2 26 0 331 238 50 40 chr9 26755565 26755666 -115515778 + MIR SINE MIR 97 198 -64 22 70 0 0 chr9 26757852 26757895 -115513549 + AT_rich Low_complexity Low_complexity 1 43 0 1543 163 13 64 chr9 26757980 26758293 -115513151 - AluJb SINE Alu -7 305 9 2495 46 10 0 chr9 26758572 26758874 -115512570 + AluY SINE Alu 1 305 -6 283 267 38 9 chr9 26758990 26759095 -115512349 + LTR37B LTR ERV1 2 109 -359 232 89 22 22 chr9 26759328 26759373 -115512071 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 400 282 8 17 chr9 26759581 26759698 -115511746 + MER69 DNA AcHobo 1 116 -2410 444 191 0 0 chr9 26759698 26759792 -115511652 + (TA)n Simple_repeat Simple_repeat 2 95 0 1652 160 24 17 chr9 26759875 26760163 -115511281 - AluJo SINE Alu -11 301 12 1084 304 87 24 chr9 26760208 26760758 -115510686 + MER69 DNA AcHobo 240 824 -402 811 271 50 14 chr9 26760780 26761138 -115510306 + MER69 DNA AcHobo 1863 2233 -293 2527 261 86 31 chr9 26761167 26762866 -115508578 + L1MC/D LINE L1 1753 3498 -2717 1727 223 41 7 chr9 26762863 26763649 -115507795 + L1MC/D LINE L1 4899 5708 -743 * 1150 279 65 20 chr9 26763654 26763995 -115507449 + ERVL LTR ERVL 1419 1774 -3990 1425 175 35 132 chr9 26764010 26764404 -115507040 + MLT1B LTR MaLR 35 390 0 2821 201 130 100 chr9 26764404 26764894 -115506550 + L1MC3 LINE L1 6614 7088 -697 237 326 12 0 chr9 26764894 26764980 -115506464 + MLT1F1 LTR MaLR 45 131 -436 2821 201 130 100 chr9 26764980 26765533 -115505911 + L1MC3 LINE L1 7088 7776 -9 26 0 0 0 chr9 26765601 26765627 -115505817 + AT_rich Low_complexity Low_complexity 1 26 0 406 256 0 0 chr9 26765638 26765724 -115505720 - MLT1C-int LTR MaLR -625 746 661 2471 216 22 51 chr9 26765787 26766458 -115504986 - MLT1C-int LTR MaLR -716 655 4 542 300 97 4 chr9 26766459 26766686 -115504758 - MLT1C LTR MaLR -4 463 216 200 206 55 68 chr9 26766978 26767051 -115504393 + MIR SINE MIR 122 193 -69 188 300 0 0 chr9 26769415 26769465 -115501979 + MER5A DNA MER1_type 63 112 -77 400 275 0 0 chr9 26769569 26769660 -115501784 + L1MC5 LINE L1 7823 7913 -48 711 216 67 36 chr9 26769699 26769893 -115501551 + MER20 DNA MER1_type 20 219 0 415 226 155 32 chr9 26770091 26770246 -115501198 + MER45A DNA AcHobo 5 178 0 363 269 167 54 chr9 26772017 26772352 -115499092 + L1ME4a LINE L1 5525 5897 -224 429 20 0 0 chr9 26772355 26772405 -115499039 + (CA)n Simple_repeat Simple_repeat 2 51 0 247 368 8 24 chr9 26772651 26772776 -115498668 - MLT2E LTR ERVL -474 154 32 1451 163 8 4 chr9 26772920 26773165 -115498279 + AluJb SINE Alu 67 312 0 392 298 8 8 chr9 26774034 26774165 -115497279 + MIR3 SINE MIR 78 208 0 34 65 0 0 chr9 26775846 26775908 -115495536 + AT_rich Low_complexity Low_complexity 1 62 0 327 104 0 0 chr9 26776162 26776210 -115495234 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 1730 169 0 16 chr9 26776216 26776523 -115494921 - AluJo SINE Alu 0 312 11 216 135 0 0 chr9 26776883 26776920 -115494524 + (TC)n Simple_repeat Simple_repeat 1 37 0 26 19 0 58 chr9 26780045 26780097 -115491347 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr9 26780493 26780517 -115490927 + AT_rich Low_complexity Low_complexity 1 24 0 197 178 22 0 chr9 26780857 26780902 -115490542 + CT-rich Low_complexity Low_complexity 3 48 0 24 85 0 0 chr9 26781065 26781124 -115490320 + AT_rich Low_complexity Low_complexity 1 59 0 1508 251 209 22 chr9 26781786 26782337 -115489107 - MLT1E1 LTR MaLR 0 654 1 34 0 0 0 chr9 26782379 26782413 -115489031 + AT_rich Low_complexity Low_complexity 1 34 0 517 284 14 0 chr9 26782528 26782669 -115488775 - MIR SINE MIR -24 238 96 22 0 0 0 chr9 26782708 26782730 -115488714 + AT_rich Low_complexity Low_complexity 1 22 0 594 274 95 12 chr9 26782873 26783158 -115488286 + L1MC4a LINE L1 5292 5606 -515 612 209 38 43 chr9 26783172 26783382 -115488062 + L1MD2 LINE L1 4747 4955 -1191 3162 194 64 63 chr9 26783388 26784258 -115487186 + L1MD2 LINE L1 5487 6357 -2 331 281 99 28 chr9 26784265 26784518 -115486926 + L1MC4a LINE L1 5612 5882 -1926 852 316 93 23 chr9 26784672 26785102 -115486342 + LTR16B LTR ERVL 3 462 -2 816 242 146 39 chr9 26785633 26785963 -115485481 + MLT1A1 LTR MaLR 1 365 0 234 365 24 2 chr9 26786467 26786619 -115484825 - MIR SINE MIR -36 172 15 187 279 33 33 chr9 26786669 26786730 -115484714 - L2 LINE L2 -1 3271 3211 24 32 0 0 chr9 26786846 26786877 -115484567 + AT_rich Low_complexity Low_complexity 1 31 0 440 236 55 18 chr9 26787252 26787362 -115484082 + L2 LINE L2 3200 3313 0 370 204 19 0 chr9 26787529 26787632 -115483812 + (TA)n Simple_repeat Simple_repeat 1 105 0 180 330 82 52 chr9 26787976 26788073 -115483371 + MIR3 SINE MIR 1 100 -108 2584 24 0 0 chr9 26788682 26788976 -115482468 - AluY SINE Alu -17 294 1 250 93 23 23 chr9 26789009 26789052 -115482392 - MLT2B3 LTR ERVL -3 551 509 213 156 0 22 chr9 26789052 26789097 -115482347 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2580 211 34 8 chr9 26789099 26789623 -115481821 - MLT2B3 LTR ERVL -19 508 1 22 0 0 0 chr9 26791091 26791113 -115480331 + AT_rich Low_complexity Low_complexity 1 22 0 3935 195 10 16 chr9 26791236 26792260 -115479184 - L1P5 LINE L1 -700 5451 4440 31 26 0 0 chr9 26792280 26792318 -115479126 + AT_rich Low_complexity Low_complexity 1 38 0 332 318 11 45 chr9 26792544 26792723 -115478721 + GA-rich Low_complexity Low_complexity 5 177 0 225 0 0 0 chr9 26793008 26793033 -115478411 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 7016 31 1 0 chr9 26793033 26793865 -115477579 - L1PA3 LINE L1 -10 6145 5313 12234 25 2 0 chr9 26793865 26795326 -115476118 + L1PA3 LINE L1 3847 5310 -836 514 282 100 6 chr9 26795326 26795496 -115475948 + MER5A DNA MER1_type 4 189 0 1125 224 133 23 chr9 26795609 26796001 -115475443 - MER63B DNA MER1_type -1 435 1 1784 252 72 74 chr9 26797184 26797581 -115473863 + L1ME3A LINE L1 4958 5354 -816 1332 205 89 0 chr9 26797581 26797839 -115473605 + AluJo SINE Alu 1 281 -31 1784 252 72 74 chr9 26797839 26798633 -115472811 + L1ME3A LINE L1 5354 6165 -5 253 298 33 25 chr9 26799052 26799173 -115472271 - MLT1L LTR MaLR -450 165 44 236 258 194 16 chr9 26799386 26799510 -115471934 - MIR SINE MIR -38 224 79 626 259 15 71 chr9 26799559 26799756 -115471688 - MER58A DNA MER1_type 0 224 39 505 229 82 12 chr9 26799760 26799930 -115471514 + L1MC4 LINE L1 7481 7662 -380 2024 217 89 6 chr9 26800483 26800957 -115470487 + MER67D LTR ERV1 1 513 -1 293 348 141 7 chr9 26801711 26801846 -115469598 + MER91A DNA MER1_type 22 174 -22 294 325 45 6 chr9 26802970 26803127 -115468317 - MIR SINE MIR 0 262 100 216 0 0 0 chr9 26803492 26803516 -115467928 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1982 120 0 7 chr9 26803979 26804262 -115467182 + AluSx SINE Alu 1 281 -31 233 0 62 0 chr9 26804265 26804297 -115467147 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1314 147 17 37 chr9 26804389 26804844 -115466600 - LTR54 LTR ERV1 -5 505 1 2676 152 47 12 chr9 26805150 26805490 -115465954 - MER84 LTR ERV1 -3 504 140 258 81 0 0 chr9 26805490 26805527 -115465917 + (TA)n Simple_repeat Simple_repeat 2 38 0 2676 152 47 12 chr9 26805527 26805673 -115465771 - MER84 LTR ERV1 -367 140 1 195 414 11 0 chr9 26805720 26805807 -115465637 + L2 LINE L2 2966 3053 -219 215 283 67 0 chr9 26805914 26805974 -115465470 - L2 LINE L2 -50 3263 3200 290 115 19 0 chr9 26806002 26806054 -115465390 + (CA)n Simple_repeat Simple_repeat 2 54 0 2531 175 130 16 chr9 26806055 26806608 -115464836 + LTR51 LTR ERV1 3 618 -53 1390 158 38 19 chr9 26806661 26806926 -115464518 + LTR23 LTR ERV1 167 436 -1 2744 171 21 6 chr9 26807037 26807510 -115463934 + MER66B LTR ERV1 7 486 0 323 274 0 0 chr9 26808312 26808385 -115463059 + LTR67 LTR ERVL 406 478 -79 410 225 60 18 chr9 26808414 26808572 -115462872 - MIR SINE MIR -62 146 30 186 43 0 0 chr9 26808777 26808800 -115462644 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 24 85 0 0 chr9 26808918 26808977 -115462467 + AT_rich Low_complexity Low_complexity 1 59 0 199 357 0 0 chr9 26809151 26809221 -115462223 - L3 LINE CR1 -191 1386 1317 1321 267 50 2 chr9 26810871 26811290 -115460154 + L1ME3A LINE L1 5497 5935 -235 193 259 17 35 chr9 26812439 26812497 -115458947 - MIR SINE MIR -60 148 92 1822 153 14 17 chr9 26814004 26814298 -115457146 + AluSx SINE Alu 3 295 -17 278 340 0 30 chr9 26814809 26814909 -115456535 - MIR SINE MIR -115 147 51 3553 123 65 125 chr9 26815160 26815813 -115455631 - LTR1 LTR ERV1 0 785 191 2306 86 3 0 chr9 26815813 26816105 -115455339 - AluSc SINE Alu -16 293 1 3553 123 65 125 chr9 26816105 26816286 -115455158 - LTR1 LTR ERV1 -594 191 1 205 314 118 20 chr9 26816400 26816502 -115454942 + L2 LINE L2 2221 2332 -982 289 233 34 40 chr9 26816889 26816903 -115454541 + (TA)n Simple_repeat Simple_repeat 1 14 -494 2139 126 0 0 chr9 26816903 26817197 -115454247 - AluSx SINE Alu -18 294 1 289 233 34 40 chr9 26817197 26817400 -115454044 + (TA)n Simple_repeat Simple_repeat 14 508 0 1022 167 86 0 chr9 26817409 26817595 -115453849 + MER2 DNA MER2_type 2 203 -142 180 231 0 0 chr9 26817895 26817934 -115453510 + L2 LINE L2 3271 3309 -4 186 357 121 6 chr9 26818145 26818302 -115453142 + MIR SINE MIR 77 251 -11 29869 116 21 59 chr9 26818500 26819161 -115452283 - L1PA7 LINE L1 -13 6141 5456 2266 77 0 20 chr9 26819161 26819460 -115451984 - AluY SINE Alu -18 293 1 29869 116 21 59 chr9 26819460 26825189 -115446255 - L1PA7 LINE L1 -698 5456 12 198 0 0 0 chr9 26825227 26825249 -115446195 + (ATTG)n Simple_repeat Simple_repeat 1 22 0 1649 132 21 4 chr9 26825249 26825492 -115445952 - AluSx SINE Alu -29 283 37 186 403 16 16 chr9 26825780 26825909 -115445535 + MIR3 SINE MIR 28 156 -52 23 33 0 0 chr9 26825922 26825952 -115445492 + AT_rich Low_complexity Low_complexity 1 30 0 253 272 206 46 chr9 26826056 26826494 -115444950 + L1ME4a LINE L1 5522 6029 -92 200 321 47 65 chr9 26826597 26826812 -115444632 + L3 LINE CR1 1355 1565 -12 324 262 47 19 chr9 26827046 26827153 -115444291 - MIR SINE MIR -78 184 75 21 57 0 0 chr9 26827500 26827535 -115443909 + AT_rich Low_complexity Low_complexity 1 35 0 181 375 0 0 chr9 26827703 26827759 -115443685 + MIR SINE MIR 59 114 -148 22 35 0 0 chr9 26828068 26828097 -115443347 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 26828947 26828969 -115442475 + AT_rich Low_complexity Low_complexity 1 22 0 1635 70 0 0 chr9 26829254 26829467 -115441977 + L1PA4 LINE L1 5932 6144 -11 27 29 0 0 chr9 26829473 26829507 -115441937 + AT_rich Low_complexity Low_complexity 1 34 0 300 313 129 0 chr9 26830041 26830188 -115441256 - MER5B DNA MER1_type -6 172 7 376 263 30 0 chr9 26832310 26832409 -115439035 - MER94 DNA DNA -32 102 1 25 0 0 0 chr9 26833146 26833171 -115438273 + AT_rich Low_complexity Low_complexity 1 25 0 393 39 0 0 chr9 26833393 26833444 -115438000 + (CA)n Simple_repeat Simple_repeat 1 51 0 1201 236 20 55 chr9 26833716 26834060 -115437384 + MLT2B1 LTR ERVL 3 334 -186 571 322 78 41 chr9 26834173 26834518 -115436926 - LTR16C LTR ERVL -49 442 85 711 270 43 9 chr9 26834988 26835199 -115436245 + L1MC1 LINE L1 254 471 -6136 3925 194 45 15 chr9 26835216 26837261 -115434183 + L1MC1 LINE L1 826 3025 -3401 2389 195 9 60 chr9 26837306 26838296 -115433148 + L1MC1 LINE L1 4948 5874 -739 330 169 0 0 chr9 26838298 26838363 -115433081 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 3369 186 6 27 chr9 26838365 26839098 -115432346 + L1MC1 LINE L1 5892 6608 -5 5657 207 24 7 chr9 26839106 26840845 -115430599 + L1MB1 LINE L1 4011 5720 -448 264 59 0 0 chr9 26840845 26840879 -115430565 + (TG)n Simple_repeat Simple_repeat 2 35 0 5657 207 24 7 chr9 26840879 26840891 -115430553 + L1MB1 LINE L1 5720 5730 -438 432 55 0 0 chr9 26840891 26840946 -115430498 + (CA)n Simple_repeat Simple_repeat 2 56 0 5657 207 24 7 chr9 26840946 26841311 -115430133 + L1MB1 LINE L1 5730 6167 -1 183 80 0 0 chr9 26842765 26842790 -115428654 + (TG)n Simple_repeat Simple_repeat 2 26 0 234 0 0 0 chr9 26842803 26842829 -115428615 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7081 11 0 1 chr9 26843481 26844331 -115427113 + L1PA2 LINE L1 5339 6187 0 31 82 0 0 chr9 26844403 26844476 -115426968 + AT_rich Low_complexity Low_complexity 1 73 0 22 0 0 0 chr9 26844664 26844686 -115426758 + AT_rich Low_complexity Low_complexity 1 22 0 277 276 101 4 chr9 26844748 26845016 -115426428 + L1ME3A LINE L1 4317 4610 -1536 400 293 50 38 chr9 26845138 26845377 -115426067 + L1ME3A LINE L1 4772 5013 -1133 1830 201 75 2 chr9 26845379 26845778 -115425666 + MSTA LTR MaLR 1 428 0 236 294 94 69 chr9 26846139 26846299 -115425145 - MER103 DNA DNA -1 165 2 234 261 0 0 chr9 26847397 26847466 -115423978 + (TA)n Simple_repeat Simple_repeat 2 70 0 246 62 0 0 chr9 26847581 26847613 -115423831 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 1989 138 0 0 chr9 26847613 26847896 -115423548 - AluSx SINE Alu -29 283 1 209 294 52 58 chr9 26848020 26848175 -115423269 - MIR SINE MIR -46 216 64 311 311 56 80 chr9 26848416 26848667 -115422777 - LTR16B LTR ERVL -12 452 208 337 301 54 0 chr9 26848785 26848971 -115422473 + L1ME3A LINE L1 5023 5218 -928 456 287 115 52 chr9 26849044 26849374 -115422070 + L1ME3A LINE L1 5335 5712 -458 1941 130 36 0 chr9 26849374 26849685 -115421759 - AluSx SINE Alu 0 321 1 456 287 115 52 chr9 26849685 26849875 -115421569 + L1ME3A LINE L1 5712 5889 -281 219 415 47 9 chr9 26850177 26850283 -115421161 - MIR SINE MIR -133 129 20 220 326 94 44 chr9 26850720 26850901 -115420543 - MIR SINE MIR -8 254 65 270 301 54 0 chr9 26851162 26851255 -115420189 + MIR SINE MIR 159 256 -6 29 47 0 0 chr9 26851576 26851619 -115419825 + AT_rich Low_complexity Low_complexity 1 43 0 508 68 0 0 chr9 26851625 26851698 -115419746 - L1PA5 LINE L1 -101 6053 5981 21979 64 4 0 chr9 26852265 26855145 -115416299 - L1P LINE L1 -2566 3580 690 4634 47 5 0 chr9 26855146 26855724 -115415720 + L1PA5 LINE L1 4395 4975 -1171 7292 45 0 3 chr9 26855729 26856804 -115414640 + L1PA5 LINE L1 5082 6153 -1 23 92 0 0 chr9 26856835 26856900 -115414544 + AT_rich Low_complexity Low_complexity 1 65 0 234 271 59 0 chr9 26857641 26857726 -115413718 + MIR SINE MIR 143 232 -30 868 242 78 55 chr9 26857818 26858203 -115413241 - MER66A LTR ERV1 -40 438 45 2039 179 60 3 chr9 26858635 26859021 -115412423 + MLT2C2 LTR ERVL 1 408 -56 212 226 32 0 chr9 26859031 26859093 -115412351 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 180 330 102 11 chr9 26860235 26860323 -115411121 + L2 LINE L2 3218 3313 0 238 274 95 0 chr9 26861332 26861416 -115410028 - MIR3 SINE MIR -45 163 72 2257 255 98 31 chr9 26861912 26863412 -115408032 + L1ME1 LINE L1 4405 5996 -170 330 211 0 0 chr9 26865800 26865914 -115405530 + (TA)n Simple_repeat Simple_repeat 1 114 0 2014 94 0 0 chr9 26866469 26866735 -115404709 + AluSc SINE Alu 1 266 -43 581 274 98 35 chr9 26867025 26867343 -115404101 + MLT1H LTR MaLR 62 399 -150 2043 114 10 0 chr9 26867423 26867712 -115403732 - AluSg SINE Alu -18 292 1 617 354 62 24 chr9 26869450 26869789 -115401655 + L2 LINE L2 2805 3156 -157 193 291 36 0 chr9 26869945 26870000 -115401444 + L2 LINE L2 3222 3278 -35 2125 125 0 6 chr9 26870015 26870327 -115401117 + AluSq SINE Alu 2 311 -2 232 324 0 0 chr9 26870327 26870398 -115401046 + GA-rich Low_complexity Low_complexity 2 72 0 443 48 16 0 chr9 26870618 26870680 -115400764 + MADE1 DNA Mariner 18 80 0 5609 193 26 26 chr9 26870688 26872340 -115399104 + L1MC1 LINE L1 4678 6332 -1 21 0 0 0 chr9 26872439 26872460 -115398984 + AT_rich Low_complexity Low_complexity 1 21 0 310 346 123 35 chr9 26872709 26873195 -115398249 + L1ME LINE L1 541 1069 -5050 446 304 131 13 chr9 26873477 26873955 -115397489 + L1ME LINE L1 5164 5705 -440 180 77 0 0 chr9 26874288 26874314 -115397130 + (TTG)n Simple_repeat Simple_repeat 3 28 0 2112 92 0 14 chr9 26874351 26874675 -115396769 - AluY SINE Alu 0 320 1 1239 263 147 18 chr9 26874842 26875393 -115396051 + L1ME2 LINE L1 5494 6115 -49 281 333 75 65 chr9 26878714 26878915 -115392529 + MIR3 SINE MIR 1 203 -5 240 278 106 46 chr9 26881472 26881623 -115389821 + MIR SINE MIR 86 245 -17 355 225 34 0 chr9 26881704 26881770 -115389674 - MER58 DNA MER1_type -11 2409 2338 207 0 0 0 chr9 26881770 26881793 -115389651 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 355 225 34 0 chr9 26881793 26881815 -115389629 - MER58 DNA MER1_type -82 2338 2318 650 314 93 64 chr9 26882321 26882436 -115389008 - L2 LINE L2 0 3313 3203 2375 87 7 0 chr9 26882436 26882746 -115388698 + AluSp SINE Alu 1 312 -1 650 314 93 64 chr9 26882746 26883237 -115388207 - L2 LINE L2 -110 3203 2690 678 143 0 0 chr9 26883944 26884063 -115387381 - L1PA16 LINE L1 -3 6163 6045 410 49 16 0 chr9 26884113 26884174 -115387270 + (TA)n Simple_repeat Simple_repeat 1 62 0 6219 228 21 104 chr9 26884184 26885205 -115386239 - L1PA16 LINE L1 -137 6029 4925 1840 144 17 3 chr9 26885205 26885504 -115385940 + AluSx SINE Alu 1 303 -9 6219 228 21 104 chr9 26885504 26888137 -115383307 - L1PA16 LINE L1 -1241 4925 2694 460 114 0 57 chr9 26888271 26888359 -115383085 - L1PA7 LINE L1 0 6154 6072 189 254 73 0 chr9 26889178 26889233 -115382211 - MIR3 SINE MIR -52 156 98 702 127 51 0 chr9 26889506 26889624 -115381820 + AluSg/x SINE Alu 188 311 -1 189 0 0 0 chr9 26890305 26890326 -115381118 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr9 26892108 26892131 -115379313 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr9 26892303 26892327 -115379117 + AT_rich Low_complexity Low_complexity 1 24 0 1869 129 45 55 chr9 26893660 26894039 -115377405 - THE1C LTR MaLR 0 375 1 515 286 141 14 chr9 26896051 26896264 -115375180 - MLT1I LTR MaLR -169 240 1 229 355 43 0 chr9 26897951 26898044 -115373400 + L2 LINE L2 2955 3051 -221 262 365 0 0 chr9 26899738 26899883 -115371561 - HAL1 LINE L1 -910 1597 1453 251 264 49 62 chr9 26899955 26900099 -115371345 - L1MEd LINE L1 -4877 1242 1101 3919 222 66 15 chr9 26900399 26902416 -115369028 - L1MB7 LINE L1 -17 6167 4047 687 369 50 19 chr9 26902522 26902983 -115368461 - L1MEd LINE L1 -5366 753 279 538 259 67 10 chr9 26903226 26903419 -115368025 + MER3 DNA MER1_type 6 209 0 272 299 52 0 chr9 26904327 26904404 -115367040 + MLT1K LTR MaLR 85 165 -423 425 241 123 37 chr9 26904516 26904678 -115366766 + MLT1K LTR MaLR 386 561 -27 312 300 50 0 chr9 26905460 26905560 -115365884 - MLT1H LTR MaLR -205 344 240 265 233 0 17 chr9 26905611 26905671 -115365773 - MLT1H LTR MaLR -400 149 91 2065 175 62 40 chr9 26905769 26905836 -115365608 - L1MA4A LINE L1 -177 6126 6062 1915 157 3 3 chr9 26905836 26906142 -115365302 - AluSx SINE Alu -6 306 1 2065 175 62 40 chr9 26906142 26906555 -115364889 - L1MA4A LINE L1 -241 6062 5635 383 318 24 0 chr9 26908462 26908588 -115362856 - MIR SINE MIR -32 230 102 21 0 0 0 chr9 26908868 26908889 -115362555 + AT_rich Low_complexity Low_complexity 1 21 0 276 111 0 0 chr9 26909232 26909277 -115362167 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr9 26909284 26909306 -115362138 + AT_rich Low_complexity Low_complexity 1 22 0 182 281 141 0 chr9 26911090 26911154 -115360290 - L2 LINE L2 -5 3267 3195 468 279 8 85 chr9 26911184 26911442 -115360002 - L2 LINE L2 -172 3141 2904 1517 137 105 43 chr9 26911760 26912111 -115359333 - THE1C LTR MaLR 0 375 3 1473 202 56 43 chr9 26912397 26912858 -115358586 + MLT1C LTR MaLR 1 467 0 1473 197 34 3 chr9 26914052 26914346 -115357098 - AluJo SINE Alu -9 303 1 21 0 0 0 chr9 26914558 26914579 -115356865 + AT_rich Low_complexity Low_complexity 1 21 0 1380 234 95 23 chr9 26914935 26915366 -115356078 + MLT1C LTR MaLR 6 467 0 286 224 0 66 chr9 26916548 26916624 -115354820 + MER92C LTR ERV1 1 71 -483 302 194 60 0 chr9 26916809 26916876 -115354568 + MER92C LTR ERV1 484 554 0 4805 182 33 46 chr9 26917325 26918717 -115352727 - L1MA10 LINE L1 -22 6312 4935 1256 225 121 17 chr9 26919051 26919406 -115352038 - MSTD LTR MaLR -4 392 1 31 58 0 0 chr9 26920123 26920175 -115351269 + AT_rich Low_complexity Low_complexity 1 52 0 20446 105 9 9 chr9 26920415 26921554 -115349890 - L1PA7 LINE L1 -6 6148 5010 2762 13 0 0 chr9 26921554 26921860 -115349584 - AluYb8 SINE Alu -11 307 2 20446 105 9 9 chr9 26921860 26924598 -115346846 - L1PA7 LINE L1 -1143 5011 2254 191 189 19 0 chr9 26925603 26925656 -115345788 + (CAT)n Simple_repeat Simple_repeat 1 54 0 229 282 206 30 chr9 26925747 26925878 -115345566 - MIR SINE MIR -108 154 1 25 51 0 0 chr9 26926348 26926387 -115345057 + AT_rich Low_complexity Low_complexity 1 39 0 186 43 0 0 chr9 26926426 26926449 -115344995 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 981 325 117 15 chr9 26926449 26927285 -115344159 - L2 LINE L2 -13 3300 2370 255 258 8 121 chr9 26927503 26927635 -115343809 - MIR SINE MIR -30 232 116 244 286 56 8 chr9 26928429 26928555 -115342889 - LTR67 LTR ERVL -16 541 410 1611 215 79 63 chr9 26928793 26929299 -115342145 + MER67D LTR ERV1 1 514 0 954 302 144 22 chr9 26930249 26930782 -115340662 + L2 LINE L2 1716 2313 -1001 335 145 29 36 chr9 26931967 26932105 -115339339 + (TA)n Simple_repeat Simple_repeat 1 137 0 1346 210 24 15 chr9 26932661 26932990 -115338454 + L1MB1 LINE L1 4281 4612 -1534 208 217 0 0 chr9 26934500 26934546 -115336898 + (TG)n Simple_repeat Simple_repeat 1 46 0 4613 227 80 11 chr9 26934929 26935988 -115335456 + L1PA13 LINE L1 83 1214 -5573 5448 195 29 16 chr9 26936022 26937842 -115333602 + L1PA13 LINE L1 1406 3261 -3536 323 227 0 53 chr9 26938665 26938740 -115332704 - L1 LINE L1 -2018 4128 4058 * 3985 206 41 23 chr9 26938727 26939730 -115331714 + L1MB1 LINE L1 4618 5663 -505 2183 99 3 13 chr9 26939730 26940071 -115331373 + AluSp SINE Alu 1 313 0 3985 206 41 23 chr9 26940071 26940578 -115330866 + L1MB1 LINE L1 5663 6159 -9 444 337 22 22 chr9 26940642 26940823 -115330621 + LTR16A LTR ERVL 263 443 -7 1288 315 131 27 chr9 26941972 26942629 -115328815 + L1MC3 LINE L1 1 725 -6134 2110 223 65 60 chr9 26942720 26944120 -115327324 + L1MC3 LINE L1 934 2453 -4504 1888 295 57 8 chr9 26944185 26945240 -115326204 + L1MC3 LINE L1 2776 3844 -3113 2449 227 67 28 chr9 26945539 26946927 -115324517 + L1MC3 LINE L1 5184 6633 -749 * 2744 208 49 92 chr9 26946922 26947625 -115323819 + L1MC3 LINE L1 6974 7706 -890 1370 242 46 3 chr9 26947625 26947972 -115323472 + MLT1A1 LTR MaLR 1 362 -3 369 0 0 0 chr9 26947972 26948013 -115323431 + (CA)n Simple_repeat Simple_repeat 2 42 0 363 44 0 0 chr9 26948012 26948057 -115323387 + (GA)n Simple_repeat Simple_repeat 2 46 0 2744 208 49 92 chr9 26948013 26948278 -115323166 + L1MC3 LINE L1 7704 7859 -737 309 89 0 0 chr9 26948279 26948324 -115323120 + (TG)n Simple_repeat Simple_repeat 2 46 0 2056 168 34 50 chr9 26949066 26949507 -115321937 + Tigger2a DNA MER2_type 1 434 0 243 330 36 0 chr9 26949839 26949951 -115321493 - Charlie8 DNA MER1_type -2004 413 298 330 270 9 26 chr9 26950017 26950132 -115321312 - Charlie8 DNA MER1_type -2228 189 77 235 286 18 0 chr9 26951250 26951306 -115320138 + L2 LINE L2 3208 3264 -8 543 329 43 10 chr9 26952766 26952973 -115318471 + MIR SINE MIR 47 260 -2 188 377 0 0 chr9 26954227 26954296 -115317148 + L2 LINE L2 3238 3306 -7 182 304 89 30 chr9 26954582 26954717 -115316727 - MIR SINE MIR 0 262 120 25 31 0 0 chr9 26954828 26954860 -115316584 + AT_rich Low_complexity Low_complexity 1 32 0 231 357 36 30 chr9 26956563 26956731 -115314713 - MER20B DNA MER1_type -611 172 4 206 279 15 15 chr9 26957123 26957191 -115314253 - L2 LINE L2 -1 3312 3245 20607 141 32 30 chr9 26957944 26961832 -115309612 - L1P3 LINE L1 -1501 4960 1061 1548 113 0 4 chr9 26961795 26962035 -115309409 + L1P LINE L1 3789 4027 -2119 * 6844 149 24 16 chr9 26962043 26963175 -115308269 - L1P3 LINE L1 -5315 1146 6 2465 68 0 0 chr9 26963789 26964100 -115307344 - AluY SINE Alu 0 311 1 1835 167 0 0 chr9 26964294 26964570 -115306874 - AluSg SINE Alu -29 281 6 580 365 16 4 chr9 26964995 26965239 -115306205 + MIR SINE MIR 16 262 0 23 54 0 0 chr9 26965474 26965511 -115305933 + AT_rich Low_complexity Low_complexity 1 37 0 216 345 86 35 chr9 26965986 26966102 -115305342 - L2 LINE L2 -8 3305 3184 499 339 20 16 chr9 26967662 26967907 -115303537 + L1MEc LINE L1 173 418 -5978 711 249 61 42 chr9 26968254 26968567 -115302877 + L1MB7 LINE L1 3972 4290 -1856 * 969 266 118 65 chr9 26968560 26969210 -115302234 + L1MB7 LINE L1 5490 6174 -10 414 305 32 21 chr9 26969241 26969431 -115302013 + L1ME1 LINE L1 5971 6162 -4 503 275 67 11 chr9 26969736 26969965 -115301479 + L1MEc LINE L1 1023 1343 -4862 4373 246 88 29 chr9 26970246 26972206 -115299238 + L1MA7 LINE L1 3387 5481 -743 1520 156 33 47 chr9 26972206 26972556 -115298888 + L1MA7 LINE L1 5933 6287 -4 195 100 0 0 chr9 26972647 26972677 -115298767 + (CAA)n Simple_repeat Simple_repeat 2 31 0 777 296 37 0 chr9 26972830 26973003 -115298441 - LTR16C LTR ERVL -79 412 228 1676 174 135 26 chr9 26973003 26973389 -115298055 + MSTA LTR MaLR 1 428 0 777 296 37 0 chr9 26973389 26973431 -115298013 - LTR16C LTR ERVL -263 228 189 940 306 49 43 chr9 26973505 26973953 -115297491 - L1MDb LINE L1 -5887 522 69 1985 144 123 0 chr9 26973953 26974334 -115297110 - MSTA LTR MaLR 0 428 1 940 306 49 43 chr9 26974334 26974398 -115297046 - L1MDb LINE L1 -6340 69 7 22 0 0 0 chr9 26975201 26975223 -115296221 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr9 26975485 26975515 -115295929 + (CA)n Simple_repeat Simple_repeat 1 30 0 29 84 0 0 chr9 26975515 26975586 -115295858 + AT_rich Low_complexity Low_complexity 1 71 0 231 326 58 55 chr9 26975855 26976146 -115295298 + MLT1H LTR MaLR 118 409 -140 255 244 67 0 chr9 26976282 26976372 -115295072 - L1MC4 LINE L1 -1339 6703 6608 41506 57 7 2 chr9 26976825 26982955 -115288489 - L1PA4 LINE L1 0 6155 2 1036 264 100 11 chr9 26983072 26983649 -115287795 + L1ME1 LINE L1 5161 5788 -571 417 224 8 8 chr9 26983776 26983901 -115287543 + L1ME1 LINE L1 5785 5909 -257 190 341 101 47 chr9 26984109 26984238 -115287206 + MIR3 SINE MIR 10 145 -63 25 31 0 0 chr9 26984391 26984423 -115287021 + AT_rich Low_complexity Low_complexity 1 32 0 220 211 0 0 chr9 26984749 26984787 -115286657 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 227 100 0 0 chr9 26984787 26984837 -115286607 + LTR66 LTR ERVL 398 447 -163 224 344 179 9 chr9 26986291 26986503 -115284941 + MIR SINE MIR 3 250 -12 180 152 0 0 chr9 26987609 26987642 -115283802 + (TG)n Simple_repeat Simple_repeat 2 34 0 2148 146 30 28 chr9 26988257 26988619 -115282825 - THE1B LTR MaLR -1 363 1 2409 77 0 10 chr9 26988840 26989153 -115282291 - AluY SINE Alu -1 310 1 24 53 0 0 chr9 26991392 26991430 -115280014 + AT_rich Low_complexity Low_complexity 1 38 0 199 369 45 27 chr9 26991463 26991574 -115279870 - L2 LINE L2 0 3313 3201 21 0 0 0 chr9 26991702 26991723 -115279721 + AT_rich Low_complexity Low_complexity 1 21 0 344 216 0 95 chr9 26991819 26991935 -115279509 + L1MC4 LINE L1 6604 6708 -1334 213 39 0 0 chr9 26991937 26991963 -115279481 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr9 26992126 26992149 -115279295 + AT_rich Low_complexity Low_complexity 1 23 0 1984 151 5 78 chr9 26992817 26993202 -115278242 - THE1B LTR MaLR 0 364 8 22 35 0 0 chr9 26993221 26993250 -115278194 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 26994539 26994567 -115276877 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr9 26994974 26994998 -115276446 + (TA)n Simple_repeat Simple_repeat 2 25 0 11739 97 8 2 chr9 26995005 26997456 -115273988 - L1PA7 LINE L1 -5 6464 4003 8009 115 9 3 chr9 26997456 26998211 -115273233 - L1PA7 LINE L1 -5285 1176 410 252 0 0 0 chr9 26998211 26998239 -115273205 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8009 115 9 3 chr9 26998239 26998650 -115272794 - L1PA7 LINE L1 -6051 410 3 2555 233 74 64 chr9 26998846 26999533 -115271911 - L1MD2 LINE L1 -10 6349 5670 5902 88 19 25 chr9 26999533 27000941 -115270503 - L1PA13 LINE L1 0 6163 4780 378 0 0 0 chr9 27000941 27000983 -115270461 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5902 88 19 25 chr9 27000983 27001364 -115270080 - L1PA13 LINE L1 -1383 4780 4398 2555 233 74 64 chr9 27001364 27002487 -115268957 - L1MD2 LINE L1 -689 5670 4522 1384 161 88 101 chr9 27002495 27002929 -115268515 - MSTA LTR MaLR 0 428 1 515 317 155 34 chr9 27003042 27003271 -115268173 - L1M4 LINE L1 -1300 4846 4646 2347 81 0 7 chr9 27003271 27003568 -115267876 - AluSc SINE Alu -14 295 1 515 317 155 34 chr9 27003568 27003861 -115267583 - L1M4 LINE L1 -1500 4646 4261 413 314 94 13 chr9 27004042 27004201 -115267243 - MIR SINE MIR -88 174 3 2202 36 0 0 chr9 27004857 27005106 -115266338 - AluY SINE Alu -13 298 50 438 280 168 0 chr9 27005128 27005271 -115266173 - MIR SINE MIR -68 194 28 182 307 93 0 chr9 27005807 27005882 -115265562 - MIR SINE MIR -95 113 32 523 200 9 17 chr9 27006059 27006174 -115265270 + MLT2B2 LTR ERVL 1 114 -401 302 264 36 45 chr9 27006182 27006292 -115265152 - L1MC4 LINE L1 -1339 6703 6595 562 132 41 11 chr9 27006298 27006840 -115264604 + (TA)n Simple_repeat Simple_repeat 1 558 0 607 127 28 18 chr9 27006853 27007139 -115264305 + (TA)n Simple_repeat Simple_repeat 1 289 0 241 82 82 61 chr9 27007141 27007190 -115264254 + MLT2B1 LTR ERVL 464 518 -2 23 0 0 0 chr9 27007196 27007219 -115264225 + AT_rich Low_complexity Low_complexity 1 23 0 333 359 106 20 chr9 27007293 27007641 -115263803 - L2 LINE L2 -782 2532 2155 36557 36 13 2 chr9 27007810 27013822 -115257622 - L1PA3 LINE L1 -11 6144 3 310 318 178 33 chr9 27014282 27014496 -115256948 - MIR SINE MIR -14 248 4 21 0 0 0 chr9 27014645 27014666 -115256778 + AT_rich Low_complexity Low_complexity 1 21 0 392 279 43 50 chr9 27015437 27015577 -115255867 + MIR SINE MIR 58 196 -66 1308 215 55 7 chr9 27015586 27015758 -115255686 - AluJo SINE Alu -5 307 114 569 33 43 0 chr9 27015758 27015850 -115255594 + (TA)n Simple_repeat Simple_repeat 2 97 0 1308 215 55 7 chr9 27015850 27015970 -115255474 - AluJo SINE Alu -198 114 1 342 0 0 0 chr9 27016377 27016415 -115255029 + (TA)n Simple_repeat Simple_repeat 2 39 0 3697 123 9 6 chr9 27016422 27017165 -115254279 - L1P5 LINE L1 -380 5771 5030 3740 212 11 10 chr9 27017167 27017974 -115253470 - L1 LINE L1 -1984 4162 3355 3898 188 94 18 chr9 27017974 27018984 -115252460 + L1PBa LINE L1 2683 3824 -3038 325 67 0 0 chr9 27019824 27019869 -115251575 - L1PA3 LINE L1 -5 6150 6106 1795 44 4 0 chr9 27019869 27020096 -115251348 - L1PA4 LINE L1 -124 6031 5804 268 159 0 0 chr9 27020787 27020831 -115250613 + LTR16C LTR ERVL 448 491 0 190 235 0 20 chr9 27020844 27020895 -115250549 - L2 LINE L2 -4 3268 3219 196 364 133 7 chr9 27020970 27021130 -115250314 - MIR SINE MIR -45 217 37 204 293 0 40 chr9 27022193 27022268 -115249176 + CT-rich Low_complexity Low_complexity 1 72 0 311 339 18 0 chr9 27025939 27026048 -115245396 - MIR SINE MIR -62 146 36 250 281 0 31 chr9 27026309 27026373 -115245071 + MLT2E LTR ERVL 61 122 -506 1867 223 50 72 chr9 27026902 27027481 -115243963 + MER74B LTR ERVL 55 620 -2 289 289 26 18 chr9 27028293 27028407 -115243037 + L1MC4 LINE L1 7327 7441 -601 22 0 0 0 chr9 27028423 27028445 -115242999 + AT_rich Low_complexity Low_complexity 1 22 0 952 243 106 58 chr9 27028668 27029046 -115242398 + MSTD LTR MaLR 1 396 0 333 190 0 0 chr9 27029046 27029104 -115242340 + L1MC2 LINE L1 6264 6321 -23 273 29 0 0 chr9 27029429 27029463 -115241981 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr9 27029734 27029757 -115241687 + AT_rich Low_complexity Low_complexity 1 23 0 351 0 0 0 chr9 27031533 27031572 -115239872 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr9 27031755 27031783 -115239661 + AT_rich Low_complexity Low_complexity 1 28 0 2326 92 0 3 chr9 27032703 27033008 -115238436 + AluSx SINE Alu 1 304 -8 409 151 0 0 chr9 27033900 27033973 -115237471 + AluS SINE Alu 1 73 -228 314 304 31 12 chr9 27034160 27034321 -115237123 + L1MC3 LINE L1 6697 6860 -925 1014 279 43 3 chr9 27034329 27034677 -115236767 + MLT1A1 LTR MaLR 1 362 -3 348 24 0 0 chr9 27034677 27034718 -115236726 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 363 44 0 0 chr9 27034717 27034762 -115236682 + (GA)n Simple_repeat Simple_repeat 2 46 0 668 188 91 0 chr9 27034829 27034983 -115236461 + L1MC3 LINE L1 6881 7048 -737 309 89 0 0 chr9 27034984 27035029 -115236415 + (TG)n Simple_repeat Simple_repeat 2 46 0 399 41 0 0 chr9 27035541 27035590 -115235854 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 308 157 0 0 chr9 27035746 27035797 -115235647 + MER5A DNA MER1_type 16 66 -123 369 0 0 0 chr9 27036031 27036072 -115235372 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 233 233 11 0 chr9 27036734 27036824 -115234620 + (TA)n Simple_repeat Simple_repeat 1 91 0 304 283 0 30 chr9 27036824 27036923 -115234521 - L1MC4 LINE L1 -1333 6709 6614 492 198 9 0 chr9 27037046 27037152 -115234292 - L1MA10 LINE L1 -2 6332 6226 6576 74 8 4 chr9 27037638 27039152 -115232292 - L1PA8 LINE L1 -2 6170 4655 252 0 0 0 chr9 27089204 27089232 -115182212 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr9 27090934 27090962 -115180482 + AT_rich Low_complexity Low_complexity 1 28 0 301 284 103 40 chr9 27091043 27091413 -115180031 + L1ME LINE L1 5267 5659 -503 276 43 128 0 chr9 27091432 27091479 -115179965 + L1MA4A LINE L1 6243 6295 -8 26 30 0 0 chr9 27091482 27091515 -115179929 + AT_rich Low_complexity Low_complexity 1 33 0 302 244 0 12 chr9 27091693 27091775 -115179669 + (TA)n Simple_repeat Simple_repeat 2 82 0 556 151 0 32 chr9 27091803 27091988 -115179456 + (TA)n Simple_repeat Simple_repeat 2 180 0 189 0 0 0 chr9 27095010 27095031 -115176413 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr9 27096752 27096774 -115174670 + AT_rich Low_complexity Low_complexity 1 22 0 324 327 48 18 chr9 27096985 27097153 -115174291 - MIR SINE MIR -43 219 47 308 127 18 0 chr9 27097448 27097503 -115173941 + CT-rich Low_complexity Low_complexity 1 56 0 1951 174 10 36 chr9 27097899 27098313 -115173131 - MER57A LTR ERV1 0 403 1 1294 93 205 5 chr9 27098313 27098528 -115172916 - MER57A-int LTR ERV1 0 7537 7280 687 124 31 31 chr9 27098529 27098658 -115172786 - LTR54B LTR ERV1 -367 131 3 1973 124 39 7 chr9 27098658 27098965 -115172479 - MER57A-int LTR ERV1 -391 7146 6830 1874 162 39 25 chr9 27098965 27099324 -115172120 + THE1B LTR MaLR 1 364 0 10813 121 4 1 chr9 27099324 27100898 -115170546 + THE1B-int LTR MaLR 1 1578 -2 1245 198 4 4 chr9 27100900 27101138 -115170306 + THE1B LTR MaLR 1 238 -117 428 315 56 23 chr9 27101793 27102009 -115169435 - L1MEc LINE L1 -4744 1566 1344 502 290 86 56 chr9 27102037 27102700 -115168744 - L1MEc LINE L1 -4875 1244 562 27 29 0 0 chr9 27102831 27102865 -115168579 + AT_rich Low_complexity Low_complexity 1 34 0 237 33 0 0 chr9 27102879 27102909 -115168535 + (TG)n Simple_repeat Simple_repeat 2 31 0 306 291 152 6 chr9 27103832 27103990 -115167454 - MIR SINE MIR 0 262 82 541 299 98 5 chr9 27104229 27104423 -115167021 + MIR SINE MIR 41 252 -10 2316 67 14 0 chr9 27104706 27105003 -115166441 + AluY SINE Alu 1 301 -10 1819 158 67 12 chr9 27105360 27105689 -115165755 + MER7A DNA MER2_type 2 346 0 278 265 0 15 chr9 27105964 27106032 -115165412 - MIR3 SINE MIR -31 177 111 374 226 43 43 chr9 27106518 27106633 -115164811 + MIR SINE MIR 138 252 -10 260 257 171 0 chr9 27107457 27107527 -115163917 - L2 LINE L2 -3 3310 3229 2623 10 0 0 chr9 27110228 27110522 -115160922 - AluYa5 SINE Alu -17 294 1 1900 171 93 20 chr9 27110855 27111008 -115160436 - Tigger2 DNA MER2_type 0 2718 2578 189 0 0 0 chr9 27111008 27111029 -115160415 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 207 0 0 0 chr9 27111028 27111051 -115160393 + (TA)n Simple_repeat Simple_repeat 2 24 0 1900 171 93 20 chr9 27111029 27111306 -115160138 - Tigger2 DNA MER2_type -140 2578 2280 414 176 0 0 chr9 27111303 27111371 -115160073 + MER8 DNA MER2_type 170 237 -2 * 21 0 0 0 chr9 27111372 27111393 -115160051 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr9 27111940 27111990 -115159454 + AT_rich Low_complexity Low_complexity 1 50 0 599 250 69 39 chr9 27112376 27112736 -115158708 + L1M4 LINE L1 2814 3184 -2962 3069 123 0 17 chr9 27112759 27113222 -115158222 + L1P LINE L1 1 455 -5691 341 273 35 7 chr9 27113219 27113362 -115158082 + L1M4 LINE L1 3209 3355 -2791 * 357 248 41 7 chr9 27113443 27113588 -115157856 + L1MA10 LINE L1 6182 6331 -3 342 243 136 24 chr9 27113953 27114122 -115157322 + LTR41 LTR ERVL 1 188 -585 2040 280 63 34 chr9 27114863 27115350 -115156094 - L1M4 LINE L1 -1786 4360 3888 2248 97 0 3 chr9 27115350 27115658 -115155786 + AluSx SINE Alu 1 307 -5 2040 280 63 34 chr9 27115658 27116058 -115155386 - L1M4 LINE L1 -2258 3888 3501 618 109 0 0 chr9 27116058 27116150 -115155294 + (TA)n Simple_repeat Simple_repeat 2 93 0 2040 280 63 34 chr9 27116150 27116492 -115154952 - L1M4 LINE L1 -2645 3501 2997 395 270 0 0 chr9 27118114 27118214 -115153230 + MER5A DNA MER1_type 10 109 -80 230 340 72 0 chr9 27118910 27119007 -115152437 + L2 LINE L2 3209 3312 -1 542 207 17 35 chr9 27119110 27119226 -115152218 + MER5B DNA MER1_type 64 177 -1 386 361 75 40 chr9 27119280 27119526 -115151918 + L3 LINE CR1 1134 1395 -182 1951 153 3 0 chr9 27119526 27119826 -115151618 + AluSx SINE Alu 2 302 -10 386 361 75 40 chr9 27119826 27119900 -115151544 + L3 LINE CR1 1395 1465 -112 1995 113 7 23 chr9 27120015 27120316 -115151128 + AluSx SINE Alu 1 296 -16 423 341 66 22 chr9 27120344 27120570 -115150874 - MIR SINE MIR 0 262 27 23 33 0 0 chr9 27120709 27120739 -115150705 + AT_rich Low_complexity Low_complexity 1 30 0 692 191 46 40 chr9 27120744 27120917 -115150527 + Tigger3(Golem) DNA MER2_type 102 275 -2754 180 285 133 44 chr9 27121373 27121531 -115149913 + MIR SINE MIR 81 252 -10 905 207 101 23 chr9 27122280 27122497 -115148947 + L1PB4 LINE L1 5919 6152 -4 214 333 78 0 chr9 27123524 27123614 -115147830 + MIR SINE MIR 56 152 -110 262 250 45 23 chr9 27124633 27124809 -115146635 + (TA)n Simple_repeat Simple_repeat 1 180 0 278 311 12 0 chr9 27125449 27125626 -115145818 + L1ME3A LINE L1 5296 5476 -694 1469 249 10 27 chr9 27125629 27126035 -115145409 + L1ME3A LINE L1 5655 6053 -117 191 86 0 29 chr9 27126978 27127013 -115144431 + (TA)n Simple_repeat Simple_repeat 1 34 0 28 29 0 0 chr9 27127052 27127087 -115144357 + AT_rich Low_complexity Low_complexity 1 35 0 236 322 70 43 chr9 27127176 27127291 -115144153 + L2 LINE L2 3153 3270 -2 1859 174 7 0 chr9 27127620 27127918 -115143526 + AluSx SINE Alu 1 300 -12 2218 234 44 127 chr9 27128847 27130039 -115141405 - MER52A LTR ERV1 0 1755 663 268 358 56 12 chr9 27131272 27131434 -115140010 - MIR SINE MIR -70 192 24 477 249 143 112 chr9 27131564 27131848 -115139596 - L1MDb LINE L1 -4392 2433 2159 9400 93 2 0 chr9 27131848 27133936 -115137508 - L1PA7 LINE L1 -2 6152 4059 477 249 143 112 chr9 27133936 27133992 -115137452 - L1MDb LINE L1 -4666 2159 2106 2342 176 30 17 chr9 27133992 27134451 -115136993 + MLT1C LTR MaLR 1 465 -2 477 249 143 112 chr9 27134451 27134502 -115136942 - L1MDb LINE L1 -4719 2106 2029 361 336 40 10 chr9 27134647 27134956 -115136488 - L1MDb LINE L1 -4869 1673 1429 1524 219 6 0 chr9 27135023 27135342 -115136102 - L1PB4 LINE L1 -12 6144 5824 1921 40 0 0 chr9 27135342 27135567 -115135877 - L1PA5 LINE L1 -434 5721 5497 3281 50 0 0 chr9 27135567 27135962 -115135482 + L1PA5 LINE L1 5748 6149 -5 267 129 0 30 chr9 27135974 27136044 -115135400 - L1PB4 LINE L1 -318 5838 5772 257 230 150 0 chr9 27136042 27136142 -115135302 - L1MDb LINE L1 -5130 1517 1403 * 2401 205 64 123 chr9 27136225 27136672 -115134772 - L1MB8 LINE L1 -66 6108 5636 1476 237 92 31 chr9 27136672 27137148 -115134296 - MLT1D LTR MaLR 0 505 1 2401 205 64 123 chr9 27137148 27137319 -115134125 - L1MB8 LINE L1 -538 5636 5456 268 108 0 0 chr9 27137319 27137356 -115134088 + U2 snRNA snRNA 1 37 -151 2401 205 64 123 chr9 27137356 27137430 -115134014 - L1MB8 LINE L1 -718 5456 5433 1995 123 3 0 chr9 27137430 27137722 -115133722 - AluY SINE Alu -18 293 1 2401 205 64 123 chr9 27137722 27137836 -115133608 - L1MB8 LINE L1 -741 5433 5314 2235 77 24 0 chr9 27137839 27138137 -115133307 - AluY SINE Alu -6 305 1 422 365 14 18 chr9 27138534 27138816 -115132628 - L1MDb LINE L1 -6076 749 469 320 301 80 45 chr9 27139246 27139445 -115131999 - L1ME2 LINE L1 -243 5921 5716 21 82 0 0 chr9 27139816 27139865 -115131579 + AT_rich Low_complexity Low_complexity 1 49 0 496 171 30 0 chr9 27140328 27140492 -115130952 + (TA)n Simple_repeat Simple_repeat 2 170 0 197 156 0 0 chr9 27142344 27142376 -115129068 - L2 LINE L2 -15 3298 3267 1925 155 0 16 chr9 27142420 27142736 -115128708 - AluSx SINE Alu -1 311 1 288 292 92 8 chr9 27142878 27143008 -115128436 - L2 LINE L2 0 3313 3173 22 0 0 0 chr9 27143617 27143639 -115127805 + AT_rich Low_complexity Low_complexity 1 22 0 367 119 15 15 chr9 27145239 27145255 -115126189 + MADE1 DNA Mariner 14 29 -51 2247 114 7 0 chr9 27145255 27145562 -115125882 - AluSc SINE Alu 0 309 1 367 119 15 15 chr9 27145562 27145612 -115125832 + MADE1 DNA Mariner 28 80 0 1393 211 3 37 chr9 27146048 27146370 -115125074 - AluJo SINE Alu -1 311 1 32 43 0 0 chr9 27146564 27146610 -115124834 + AT_rich Low_complexity Low_complexity 1 46 0 1289 222 10 33 chr9 27147568 27147874 -115123570 - AluJo SINE Alu -13 299 1 240 325 155 15 chr9 27147948 27148213 -115123231 - L3 LINE CR1 -27 1550 1249 183 254 0 0 chr9 27148514 27148577 -115122867 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 491 355 52 10 chr9 27148649 27149059 -115122385 + LTR16B LTR ERVL 3 460 -4 3008 164 6 0 chr9 27149165 27149660 -115121784 - L1PA16 LINE L1 -46 6120 5623 4972 83 3 0 chr9 27149660 27150313 -115121131 + HERV9 LTR ERV1 7745 8399 0 2612 143 82 185 chr9 27150313 27151352 -115120092 + pTR5 LTR ERV1 1 2438 0 6158 180 43 49 chr9 27151355 27152284 -115119160 + L1M4c LINE L1 873 1789 -4595 2774 162 12 12 chr9 27152284 27152779 -115118665 + LOR1a LTR ERV1 2 496 -1 6158 180 43 49 chr9 27152779 27153398 -115118046 + L1M4c LINE L1 1789 2411 -3973 716 161 7 7 chr9 27153399 27153542 -115117902 + L1MB3 LINE L1 6038 6180 -3 297 295 45 45 chr9 27153549 27153749 -115117695 + L1MEc LINE L1 1624 1823 -4573 445 293 63 52 chr9 27153933 27154220 -115117224 + L1MEc LINE L1 2012 2301 -4095 246 292 0 0 chr9 27155058 27155236 -115116208 + (TA)n Simple_repeat Simple_repeat 1 178 0 181 206 16 16 chr9 27156449 27156512 -115114932 + CT-rich Low_complexity Low_complexity 3 65 0 399 41 0 0 chr9 27157315 27157364 -115114080 + (TG)n Simple_repeat Simple_repeat 2 50 0 1312 248 162 12 chr9 27157383 27157896 -115113548 + L1MC4 LINE L1 6856 7445 -597 3638 135 40 62 chr9 27157899 27158625 -115112819 + MER50 LTR ERV1 1 710 -24 1148 233 43 94 chr9 27158635 27159235 -115112209 + L1MD3 LINE L1 7486 8022 -2 774 310 82 4 chr9 27159238 27159519 -115111925 + L2 LINE L2 2449 2751 -563 7738 16 0 1 chr9 27159534 27160499 -115110945 + L1PA3 LINE L1 5212 6175 0 306 233 41 0 chr9 27160530 27160603 -115110841 + MER94 DNA DNA 19 94 -40 323 402 40 17 chr9 27160642 27160938 -115110506 + L2 LINE L2 2819 3121 -192 382 279 52 65 chr9 27161123 27161277 -115110167 + L2 LINE L2 3161 3312 -1 22 0 0 0 chr9 27161417 27161439 -115110005 + AT_rich Low_complexity Low_complexity 1 22 0 1159 239 49 3 chr9 27162310 27162657 -115108787 + L1ME4a LINE L1 5513 5875 -246 24 0 0 0 chr9 27162672 27162696 -115108748 + AT_rich Low_complexity Low_complexity 1 24 0 581 357 65 42 chr9 27164369 27164845 -115106599 + LTR16C LTR ERVL 5 491 0 336 203 0 0 chr9 27165109 27165168 -115106276 + MLT1D LTR MaLR 1 59 -446 836 275 17 4 chr9 27165297 27165533 -115105911 + MLT1D LTR MaLR 267 505 0 322 326 62 0 chr9 27166106 27166235 -115105209 + MIR SINE MIR 50 186 -76 380 42 0 56 chr9 27166242 27166313 -115105131 + (TAATG)n Simple_repeat Simple_repeat 4 70 0 191 333 72 67 chr9 27166901 27167081 -115104363 + L2 LINE L2 2928 3108 -164 2735 94 23 15 chr9 27167701 27168096 -115103348 + MLT2A1 LTR ERVL 3 400 -44 202 158 26 0 chr9 27168096 27168134 -115103310 + (TA)n Simple_repeat Simple_repeat 2 40 0 377 113 0 16 chr9 27168176 27168238 -115103206 - MLT2A2 LTR ERVL -1 452 392 216 123 18 53 chr9 27168283 27168340 -115103104 + (TA)n Simple_repeat Simple_repeat 2 56 0 384 71 0 18 chr9 27168340 27168396 -115103048 + MLT2A1 LTR ERVL 399 453 0 190 297 143 22 chr9 27168615 27168706 -115102738 + MIR SINE MIR 98 199 -63 341 299 11 11 chr9 27169009 27169096 -115102348 + MER58A DNA MER1_type 4 90 -17 643 224 16 0 chr9 27169132 27169257 -115102187 + MER58A DNA MER1_type 95 221 -3 318 50 0 0 chr9 27169747 27169787 -115101657 + (TG)n Simple_repeat Simple_repeat 1 40 0 231 170 0 0 chr9 27169787 27169834 -115101610 + GA-rich Low_complexity Low_complexity 2 48 0 315 171 66 26 chr9 27170084 27170160 -115101284 - L1ME4a LINE L1 -51 6070 5992 21 36 0 0 chr9 27171305 27171333 -115100111 + AT_rich Low_complexity Low_complexity 1 28 0 205 143 48 0 chr9 27172191 27172233 -115099211 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 38 22 0 0 chr9 27172951 27172996 -115098448 + AT_rich Low_complexity Low_complexity 1 45 0 246 290 21 11 chr9 27174105 27174198 -115097246 + L1M1 LINE L1 5364 5457 -847 274 243 47 34 chr9 27174572 27174720 -115096724 - L1ME4a LINE L1 -304 5817 5668 1747 185 7 70 chr9 27174862 27175278 -115096166 + MLT1B LTR MaLR 1 390 0 407 274 46 46 chr9 27175549 27175635 -115095809 - MIR SINE MIR 0 262 174 2015 171 43 29 chr9 27175635 27176055 -115095389 + MSTB LTR MaLR 1 426 0 407 274 46 46 chr9 27176055 27176121 -115095323 - MIR SINE MIR -87 175 110 405 308 16 38 chr9 27176201 27176386 -115095058 - MIR SINE MIR 0 262 82 260 243 54 0 chr9 27176807 27176881 -115094563 + MER116 DNA Mariner 3 80 0 1636 265 115 59 chr9 27177755 27178633 -115092811 + L1MEc LINE L1 44 970 -5426 860 284 55 32 chr9 27178961 27179544 -115091900 + L1M3d LINE L1 1203 1783 -4520 21 71 0 0 chr9 27179607 27179649 -115091795 + AT_rich Low_complexity Low_complexity 1 42 0 5968 271 69 10 chr9 27179998 27182427 -115089017 + L1M3d LINE L1 2607 5179 -1203 2855 226 29 68 chr9 27182448 27182874 -115088570 + L1ME1 LINE L1 5398 5839 -563 2037 47 0 55 chr9 27182874 27183148 -115088296 + AluY SINE Alu 39 297 -14 2855 226 29 68 chr9 27183148 27183756 -115087688 + L1ME1 LINE L1 5839 6397 -5 718 197 21 7 chr9 27186408 27186550 -115084894 - MIR SINE MIR -24 238 95 535 252 65 42 chr9 27186846 27187060 -115084384 + MER106A DNA MER1_type 1 219 -17 24 0 0 0 chr9 27187683 27187707 -115083737 + AT_rich Low_complexity Low_complexity 1 24 0 771 227 58 58 chr9 27187709 27187951 -115083493 - MIR SINE MIR -15 247 6 379 330 26 26 chr9 27187946 27188140 -115083304 - MIR SINE MIR -28 234 41 * 245 29 0 29 chr9 27188250 27188285 -115083159 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 265 183 39 33 chr9 27188850 27189003 -115082441 + (TAGA)n Simple_repeat Simple_repeat 1 154 0 182 91 0 73 chr9 27189005 27189060 -115082384 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 185 146 42 156 chr9 27189477 27189573 -115081871 - MIR SINE MIR -54 208 124 351 330 101 0 chr9 27190826 27191014 -115080430 - L1ME3A LINE L1 -215 5938 5732 2560 84 91 19 chr9 27191016 27191432 -115080012 + LTR7 LTR ERV1 3 448 -2 15027 104 11 6 chr9 27191434 27193906 -115077538 + HERVH LTR ERV1 1 2983 -4730 8363 106 3 3 chr9 27193916 27195990 -115075454 + HERVH LTR ERV1 3140 5149 -2564 1239 171 19 0 chr9 27195991 27196207 -115075237 + HERVH LTR ERV1 5600 5819 -1894 * 2370 100 48 13 chr9 27196205 27196584 -115074860 + HERVH LTR ERV1 7322 7713 0 2050 79 16 13 chr9 27196584 27196942 -115074502 + LTR7 LTR ERV1 1 448 -2 352 299 102 0 chr9 27197080 27197230 -115074214 - L1ME3A LINE L1 -588 5559 5394 323 356 96 10 chr9 27197231 27197543 -115073901 - L1ME3A LINE L1 -4635 1494 1156 339 280 29 34 chr9 27197595 27197802 -115073642 - L1ME3A LINE L1 -5011 1108 903 2963 113 7 13 chr9 27197876 27198556 -115072888 - L1PA8A LINE L1 -352 5779 5023 321 357 50 11 chr9 27198559 27198741 -115072703 - L1ME3A LINE L1 -5370 749 561 939 311 83 11 chr9 27199798 27200149 -115071295 - MLT2E LTR ERVL -240 388 13 333 0 0 0 chr9 27200286 27200323 -115071121 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 281 318 150 18 chr9 27201268 27201488 -115069956 + MIR SINE MIR 14 262 0 480 247 41 53 chr9 27201578 27201748 -115069696 - L2 LINE L2 0 3313 3146 314 233 107 39 chr9 27201832 27201935 -115069509 + L2 LINE L2 3204 3313 0 22 56 0 0 chr9 27202037 27202073 -115069371 + AT_rich Low_complexity Low_complexity 1 36 0 778 195 40 29 chr9 27202990 27203164 -115068280 + MER45A DNA AcHobo 1 176 -2 386 272 87 74 chr9 27203166 27203478 -115067966 + LTR33 LTR ERVL 198 513 -8 24 0 0 0 chr9 27204320 27204344 -115067100 + AT_rich Low_complexity Low_complexity 1 24 0 525 281 22 45 chr9 27204346 27204524 -115066920 - MIR SINE MIR -18 244 71 189 295 76 97 chr9 27205188 27205425 -115066019 + L2 LINE L2 1830 2061 -1253 477 50 0 0 chr9 27206386 27206446 -115064998 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 903 127 38 6 chr9 27207143 27207301 -115064143 + L1PA16 LINE L1 5985 6147 -19 1728 243 27 2 chr9 27207540 27208014 -115063430 + L1MC3 LINE L1 4849 5334 -812 5922 206 88 58 chr9 27208019 27209862 -115061582 + L1MC3 LINE L1 5432 7329 -456 1243 269 33 3 chr9 27209888 27210278 -115061166 - L1ME LINE L1 -351 5882 5481 1906 321 65 32 chr9 27210289 27211806 -115059638 - L1ME LINE L1 -4757 1639 74 2109 64 0 8 chr9 27211812 27212076 -115059368 - AluY SINE Alu -13 298 37 5415 59 4 4 chr9 27212085 27212785 -115058659 - L1PA5 LINE L1 0 6154 5455 561 79 0 0 chr9 27212785 27212861 -115058583 + L1PA5 LINE L1 5408 5483 -671 244 176 14 40 chr9 27213385 27213459 -115057985 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 183 80 0 0 chr9 27214460 27214485 -115056959 + (A)n Simple_repeat Simple_repeat 1 25 0 316 279 0 0 chr9 27215419 27215498 -115055946 + MER5A DNA MER1_type 28 106 -83 625 271 63 14 chr9 27215537 27215758 -115055686 + MIR SINE MIR 23 254 -8 608 235 0 0 chr9 27216149 27216281 -115055163 + FLAM_C SINE Alu 2 133 0 1171 178 10 0 chr9 27216313 27216510 -115054934 + AluSg/x SINE Alu 85 283 -29 22 0 0 0 chr9 27216516 27216538 -115054906 + AT_rich Low_complexity Low_complexity 1 22 0 551 195 34 105 chr9 27216715 27216982 -115054462 + L1ME2 LINE L1 3671 3918 -2228 1902 254 129 42 chr9 27217013 27218177 -115053267 + L1ME2 LINE L1 4114 5487 -677 1940 37 0 12 chr9 27218177 27218421 -115053023 + L1PA5 LINE L1 5914 6154 0 1902 254 129 42 chr9 27218421 27219163 -115052281 + L1ME2 LINE L1 5487 6163 -1 14269 49 1 2 chr9 27219354 27221154 -115050290 - L1P LINE L1 -3330 2816 1019 7263 34 12 1 chr9 27221154 27222459 -115048985 + L1PA4 LINE L1 4839 6153 -2 2384 113 20 0 chr9 27222479 27222833 -115048611 - L1PA10 LINE L1 -7 6161 5801 257 340 39 0 chr9 27223042 27223145 -115048299 + MIR SINE MIR 35 141 -121 1559 172 0 19 chr9 27223309 27223576 -115047868 + AluSq SINE Alu 1 262 -51 256 361 110 11 chr9 27225828 27226019 -115045425 + MIR SINE MIR 29 238 -24 227 180 80 0 chr9 27227052 27227102 -115044342 + HsTC2 DNA Tc2 772 825 -1073 551 237 78 23 chr9 27227212 27227545 -115043899 - L1MB8 LINE L1 -7 6171 5782 233 238 95 0 chr9 27227736 27227799 -115043645 + L1ME4a LINE L1 5529 5597 -2188 363 23 0 0 chr9 27228100 27228144 -115043300 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 242 347 0 0 chr9 27229137 27229209 -115042235 - MIR SINE MIR -18 244 173 1081 217 63 43 chr9 27230030 27230314 -115041130 - MLT1A2 LTR MaLR 0 467 162 3399 52 5 14 chr9 27230314 27230760 -115040684 - L1PA7 LINE L1 -5 6149 5708 1081 217 63 43 chr9 27230760 27230916 -115040528 - MLT1A2 LTR MaLR -305 162 11 590 87 64 10 chr9 27231618 27232094 -115039350 + (TA)n Simple_repeat Simple_repeat 1 501 0 1489 191 54 7 chr9 27232296 27232594 -115038850 - AluJb SINE Alu 0 312 1 754 175 0 0 chr9 27232994 27233114 -115038330 + FLAM_A SINE Alu 2 121 -12 363 23 0 0 chr9 27233115 27233159 -115038285 + (CATA)n Simple_repeat Simple_repeat 2 45 0 188 273 141 50 chr9 27233582 27233681 -115037763 + L2 LINE L2 3206 3313 0 21 71 0 0 chr9 27233885 27233927 -115037517 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr9 27234647 27234679 -115036765 + AT_rich Low_complexity Low_complexity 1 32 0 2004 108 28 3 chr9 27234805 27235091 -115036353 - AluSx SINE Alu -19 293 1 210 323 30 20 chr9 27235833 27235932 -115035512 + MER5A DNA MER1_type 7 106 -83 339 314 176 6 chr9 27238028 27238340 -115033104 + L1ME4a LINE L1 5741 6105 -16 22 0 0 0 chr9 27238341 27238363 -115033081 + AT_rich Low_complexity Low_complexity 1 22 0 662 195 31 0 chr9 27238573 27238701 -115032743 + MLT1A2 LTR MaLR 1 132 -242 581 220 14 28 chr9 27238693 27238834 -115032610 + MLT1A2 LTR MaLR 236 374 0 * 345 266 11 82 chr9 27239332 27239599 -115031845 + L1MEd LINE L1 1249 1496 -5138 305 321 57 44 chr9 27239619 27239868 -115031576 + L1MEd LINE L1 1457 1765 -4832 4297 148 16 7 chr9 27240017 27240758 -115030686 + L1MC1 LINE L1 5585 6332 -1 313 306 147 48 chr9 27240878 27241299 -115030145 + L1MEd LINE L1 2135 2597 -4228 11010 249 45 55 chr9 27241510 27245559 -115025885 + L1MA4A LINE L1 3 4099 -2749 3867 180 51 13 chr9 27245532 27246624 -115024820 + L1MA4A LINE L1 5818 6861 -7 * 479 175 33 0 chr9 27246694 27246814 -115024630 + (TA)n Simple_repeat Simple_repeat 2 125 0 1822 124 4 0 chr9 27246834 27247084 -115024360 - AluSx SINE Alu -61 251 1 189 0 0 0 chr9 27247164 27247185 -115024259 + (T)n Simple_repeat Simple_repeat 1 21 0 548 259 96 7 chr9 27247191 27247461 -115023983 + L1MEd LINE L1 3220 3513 -3131 416 222 90 21 chr9 27247551 27247695 -115023749 + Charlie2a DNA MER1_type 1421 1574 -1288 818 249 92 66 chr9 27247801 27248216 -115023228 + Charlie2a DNA MER1_type 1827 2265 -597 1479 185 46 0 chr9 27248216 27248497 -115022947 + AluJo SINE Alu 1 294 -18 818 249 92 66 chr9 27248497 27248715 -115022729 + Charlie2a DNA MER1_type 2265 2476 -386 385 283 78 58 chr9 27248877 27249135 -115022309 - Charlie2a DNA MER1_type -2437 345 83 243 343 75 14 chr9 27249264 27249410 -115022034 - MER112 DNA MER1_type -1 259 105 227 284 0 0 chr9 27249428 27249495 -115021949 + (TA)n Simple_repeat Simple_repeat 2 68 0 183 80 0 0 chr9 27250079 27250104 -115021340 + (A)n Simple_repeat Simple_repeat 1 25 0 2095 110 3 0 chr9 27251405 27251714 -115019730 - AluSq SINE Alu 0 310 1 216 256 12 24 chr9 27252071 27252153 -115019291 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr9 27252233 27252254 -115019190 + AT_rich Low_complexity Low_complexity 1 21 0 230 148 49 0 chr9 27253867 27253928 -115017516 + (TAATG)n Simple_repeat Simple_repeat 3 66 0 205 339 111 12 chr9 27254035 27254058 -115017386 + MIR SINE MIR 34 53 -209 2018 112 10 7 chr9 27254058 27254352 -115017092 - AluSg SINE Alu -15 295 1 205 339 111 12 chr9 27254352 27254499 -115016945 + MIR SINE MIR 53 221 -41 503 101 13 13 chr9 27254684 27254763 -115016681 + L1MC1 LINE L1 6250 6328 -5 253 379 23 29 chr9 27257344 27257518 -115013926 + MIR SINE MIR 20 192 -70 3423 204 67 18 chr9 27258868 27259497 -115011947 - L1MC3 LINE L1 -21 7764 7167 1498 192 67 28 chr9 27259497 27259856 -115011588 - THE1C LTR MaLR 0 375 3 9069 156 7 35 chr9 27259858 27261482 -115009962 - THE1C-int LTR MaLR 0 1580 3 1786 132 82 28 chr9 27261485 27261658 -115009786 - THE1C LTR MaLR -1 374 212 378 0 0 0 chr9 27261658 27261700 -115009744 + (GA)n Simple_repeat Simple_repeat 1 42 0 1786 132 82 28 chr9 27261700 27261881 -115009563 - THE1C LTR MaLR -163 212 1 3423 204 67 18 chr9 27261881 27262101 -115009343 - L1MC3 LINE L1 -619 7166 6866 183 114 0 0 chr9 27262102 27262137 -115009307 + (TTAG)n Simple_repeat Simple_repeat 3 37 0 6217 258 47 16 chr9 27262174 27265355 -115006089 - L1MCa LINE L1 -1538 5403 1899 2742 250 67 30 chr9 27265362 27265559 -115005885 - L1MCa LINE L1 -5106 1316 1128 192 40 0 0 chr9 27265559 27265584 -115005860 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2742 250 67 30 chr9 27265584 27265997 -115005447 - L1MCa LINE L1 -5294 1128 732 2521 48 3 3 chr9 27265997 27266307 -115005137 + AluY SINE Alu 1 310 -1 2742 250 67 30 chr9 27266307 27266630 -115004814 - L1MCa LINE L1 -5690 732 12 312 244 90 65 chr9 27266679 27266880 -115004564 + L1MC4a LINE L1 5741 5946 -1862 410 95 0 95 chr9 27266930 27267004 -115004440 + MLT2B3 LTR ERVL 1 67 -487 2374 208 22 28 chr9 27267054 27267554 -115003890 + MLT2B3 LTR ERVL 38 534 -20 24 53 0 0 chr9 27267588 27267626 -115003818 + AT_rich Low_complexity Low_complexity 1 38 0 198 103 0 0 chr9 27267708 27267737 -115003707 + (TA)n Simple_repeat Simple_repeat 2 30 0 455 288 23 57 chr9 27268747 27268924 -115002520 + MER117 DNA MER1_type 3 173 -24 297 278 0 46 chr9 27269031 27269139 -115002305 - MIR SINE MIR 0 262 160 2532 208 56 20 chr9 27270141 27270781 -115000663 - L1MB8 LINE L1 -5 6173 5511 1080 253 54 41 chr9 27270776 27271139 -115000305 - L1M4b LINE L1 -6355 504 11 * 5580 118 36 14 chr9 27271333 27272295 -114999149 - Tigger3b DNA MER2_type 0 1231 249 1738 220 40 30 chr9 27272295 27272700 -114998744 - LTR2 LTR ERV1 0 449 41 1483 138 74 0 chr9 27272787 27273018 -114998426 - Tigger3b DNA MER2_type -983 248 1 1238 284 61 33 chr9 27273018 27274233 -114997211 + L1MEc LINE L1 1619 2836 -3379 1818 224 25 43 chr9 27274251 27274689 -114996755 - MLT2B3 LTR ERVL -124 430 1 2521 278 35 23 chr9 27274691 27274898 -114996546 + L1MEc LINE L1 240 443 -5953 1875 151 13 0 chr9 27274898 27275196 -114996248 + AluSx SINE Alu 4 305 -7 2521 278 35 23 chr9 27275196 27275929 -114995515 + L1MEc LINE L1 443 1191 -5205 * 2661 180 106 41 chr9 27275922 27276382 -114995062 + MLT-int LTR MaLR 34 545 -1190 1423 158 81 56 chr9 27276382 27276667 -114994777 + AluSx SINE Alu 1 292 -20 2661 180 106 41 chr9 27276667 27276822 -114994622 + MLT-int LTR MaLR 545 689 -1046 1721 183 19 46 chr9 27276833 27277205 -114994239 - THE1B LTR MaLR 0 364 3 2469 102 3 0 chr9 27277207 27277541 -114993903 - THE1B-int LTR MaLR 0 1580 1246 2343 222 13 4 chr9 27277545 27278009 -114993435 + MLT1A1-int LTR MaLR 1268 1735 0 1051 202 102 97 chr9 27278009 27278371 -114993073 + MLT1A1 LTR MaLR 1 364 -1 1653 219 92 104 chr9 27279719 27280668 -114990776 - LTR1B LTR ERV1 -1 1019 1 317 316 113 47 chr9 27283302 27283577 -114987867 - MLT1J1 LTR MaLR -8 438 146 22 35 0 0 chr9 27284256 27284285 -114987159 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 27284516 27284537 -114986907 + AT_rich Low_complexity Low_complexity 1 21 0 250 373 0 26 chr9 27284696 27284849 -114986595 + MIR SINE MIR 104 252 -10 3270 231 67 24 chr9 27334961 27335737 -114935707 + L1MEc LINE L1 1209 1950 -4265 2746 148 14 18 chr9 27335737 27336242 -114935202 + L1MA8 LINE L1 5784 6286 -5 3270 231 67 24 chr9 27336242 27336890 -114934554 + L1MEc LINE L1 1950 2694 -3521 269 172 17 0 chr9 27336898 27336956 -114934488 + L1MD1 LINE L1 1888 1946 -4594 2074 269 40 19 chr9 27337044 27337948 -114933496 + L1MD1 LINE L1 3039 3961 -2579 1903 182 48 42 chr9 27337980 27338520 -114932924 - MLT2A2 LTR ERVL 0 554 1 4753 242 48 13 chr9 27338520 27341088 -114930356 + L1MD1 LINE L1 3973 6636 0 2147 116 0 26 chr9 27341186 27341497 -114929947 - AluSx SINE Alu -7 305 3 353 328 153 6 chr9 27342198 27342375 -114929069 + MIR SINE MIR 1 203 -59 209 305 0 49 chr9 27342604 27342686 -114928758 + MIR SINE MIR 75 152 -110 1065 95 4 17 chr9 27342753 27342985 -114928459 + (TTCC)n Simple_repeat Simple_repeat 1 228 0 22 0 0 0 chr9 27343150 27343172 -114928272 + AT_rich Low_complexity Low_complexity 1 22 0 445 180 0 11 chr9 27344192 27344281 -114927163 - MER33 DNA MER1_type 0 363 276 374 247 47 9 chr9 27344275 27344386 -114927058 - MER33 DNA MER1_type -250 74 1 * 23 0 0 0 chr9 27344885 27344908 -114926536 + AT_rich Low_complexity Low_complexity 1 23 0 2421 63 3 0 chr9 27344930 27345229 -114926215 + AluSp SINE Alu 2 301 -12 32 26 0 0 chr9 27345277 27345316 -114926128 + AT_rich Low_complexity Low_complexity 1 39 0 392 319 112 30 chr9 27345911 27346143 -114925301 + L1ME LINE L1 5351 5601 -520 29 28 0 0 chr9 27346233 27346269 -114925175 + AT_rich Low_complexity Low_complexity 1 36 0 277 200 14 14 chr9 27346277 27346347 -114925097 + L1ME LINE L1 5769 5838 -283 2429 267 126 36 chr9 27346495 27347948 -114923496 + Charlie7 DNA MER1_type 725 2308 -304 24 0 0 0 chr9 27347967 27347991 -114923453 + AT_rich Low_complexity Low_complexity 1 24 0 1936 220 106 33 chr9 27348813 27349331 -114922113 + ERVL-F LTR ERVL 5201 5756 -8 313 338 35 7 chr9 27349331 27349473 -114921971 + MLT2F LTR ERVL 1 146 -517 * 464 220 0 13 chr9 27349472 27349587 -114921857 + MLT1E3 LTR MaLR 46 205 -449 378 0 0 0 chr9 27351064 27351106 -114920338 + (CA)n Simple_repeat Simple_repeat 1 42 0 201 133 0 0 chr9 27351399 27351429 -114920015 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 357 145 0 0 chr9 27351519 27351581 -114919863 + (TA)n Simple_repeat Simple_repeat 1 62 0 1875 128 35 10 chr9 27351633 27351921 -114919523 + AluSq SINE Alu 1 295 -18 320 341 7 51 chr9 27351931 27352069 -114919375 - MIR SINE MIR -110 152 21 943 218 57 5 chr9 27352113 27352306 -114919138 + MER82 DNA MER2_type 445 647 -6 186 103 0 0 chr9 27352782 27352811 -114918633 + (TG)n Simple_repeat Simple_repeat 2 30 0 217 137 98 20 chr9 27354099 27354150 -114917294 - L2 LINE L2 -4 3309 3255 314 284 64 18 chr9 27354205 27354314 -114917130 + L2 LINE L2 3192 3305 -8 * 340 288 179 14 chr9 27354300 27354512 -114916932 - MIR SINE MIR -10 252 6 7252 160 11 21 chr9 27355917 27357227 -114914217 - HSMAR2 DNA Mariner -3 1299 3 272 196 18 0 chr9 27357375 27357431 -114914013 + MER63 DNA MER1_type 694 750 -311 241 211 0 19 chr9 27357432 27357484 -114913960 + MER63 DNA MER1_type 977 1027 -33 252 59 0 0 chr9 27357751 27357785 -114913659 + (CA)n Simple_repeat Simple_repeat 2 35 0 313 296 120 69 chr9 27358925 27358999 -114912445 + L2 LINE L2 3024 3093 -220 1973 144 3 0 chr9 27358999 27359291 -114912153 - AluSx SINE Alu -19 293 1 313 296 120 69 chr9 27359291 27359490 -114911954 + L2 LINE L2 3093 3311 -2 195 100 0 0 chr9 27361452 27361482 -114909962 + (CA)n Simple_repeat Simple_repeat 1 30 0 1808 166 44 14 chr9 27361690 27362052 -114909392 - THE1C LTR MaLR 0 375 3 9014 133 38 40 chr9 27362054 27363635 -114907809 - THE1C-int LTR MaLR 0 1580 3 1453 191 70 14 chr9 27363637 27363992 -114907452 - THE1C LTR MaLR 0 375 1 895 232 150 37 chr9 27364016 27364417 -114907027 + MLT1D LTR MaLR 54 499 -6 15401 203 29 24 chr9 27365194 27368858 -114902586 - L1PA11 LINE L1 -1 7611 3966 251 231 0 13 chr9 27368858 27368936 -114902508 + (TG)n Simple_repeat Simple_repeat 2 78 0 15401 203 29 24 chr9 27368936 27368950 -114902494 - L1PA11 LINE L1 -3646 3966 3954 2207 98 0 3 chr9 27368950 27369245 -114902199 - AluSq SINE Alu -19 294 1 15401 203 29 24 chr9 27369245 27372338 -114899106 - L1PA11 LINE L1 -3658 3954 11 5069 121 17 10 chr9 27372458 27373232 -114898212 + MER4E LTR ERV1 1 779 0 349 85 0 0 chr9 27373345 27373392 -114898052 + LOR1b LTR ERV1 1 47 -414 2107 173 14 0 chr9 27373393 27373752 -114897692 + LOR1a LTR ERV1 134 497 0 188 392 39 10 chr9 27374996 27375098 -114896346 + MER5A DNA MER1_type 61 165 -24 367 62 62 0 chr9 27375444 27375509 -114895935 + CT-rich Low_complexity Low_complexity 4 72 0 1775 159 0 7 chr9 27375526 27375815 -114895629 - AluJb SINE Alu -25 287 1 432 275 9 0 chr9 27376566 27376675 -114894769 + MIR SINE MIR 87 196 -66 2059 233 20 39 chr9 27376830 27377340 -114894104 + MLT1D LTR MaLR 1 500 -5 373 270 58 0 chr9 27377325 27377462 -114893982 - MLT1L LTR MaLR -59 556 412 * 23 33 0 0 chr9 27377621 27377651 -114893793 + AT_rich Low_complexity Low_complexity 1 30 0 405 257 104 69 chr9 27378011 27378346 -114893098 - L1M4 LINE L1 -1488 4658 4312 222 62 0 0 chr9 27378633 27378665 -114892779 + (TG)n Simple_repeat Simple_repeat 2 33 0 713 350 104 12 chr9 27378770 27379344 -114892100 - L1MEd LINE L1 -5491 628 2 321 309 62 88 chr9 27379784 27380205 -114891239 - L1MDa LINE L1 -4476 2064 1655 22 35 0 0 chr9 27380248 27380277 -114891167 + AT_rich Low_complexity Low_complexity 1 29 0 261 317 234 35 chr9 27380968 27381451 -114889993 + L2 LINE L2 268 846 -2468 200 247 14 27 chr9 27381952 27382025 -114889419 + GA-rich Low_complexity Low_complexity 2 73 0 267 238 63 0 chr9 27382085 27382148 -114889296 - MIR SINE MIR -109 99 33 269 248 120 26 chr9 27382914 27383031 -114888413 + MER67D LTR ERV1 386 513 -1 415 218 80 58 chr9 27383216 27383404 -114888040 - MER106A DNA MER1_type -44 192 1 7220 17 0 0 chr9 27383743 27384568 -114886876 + L1PA3 LINE L1 5328 6152 -3 21 57 0 0 chr9 27384589 27384624 -114886820 + AT_rich Low_complexity Low_complexity 1 35 0 209 179 0 0 chr9 27384679 27384718 -114886726 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1761 209 64 11 chr9 27385163 27385598 -114885846 - MER39 LTR ERV1 0 707 250 237 232 188 0 chr9 27385572 27385641 -114885803 - LTR29 LTR ERV1 -534 88 7 * 1933 111 54 0 chr9 27385811 27386091 -114885353 - AluSg SINE Alu -12 298 4 272 338 92 7 chr9 27386677 27386819 -114884625 + MIR SINE MIR 29 182 -80 24 0 0 0 chr9 27386881 27386905 -114884539 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr9 27388505 27388546 -114882898 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr9 27388598 27388626 -114882818 + AT_rich Low_complexity Low_complexity 1 28 0 240 216 0 63 chr9 27388873 27388984 -114882460 + T-rich Low_complexity Low_complexity 3 106 0 295 301 29 0 chr9 27389053 27389156 -114882288 + MER69A DNA AcHobo 65 170 -7 26 50 0 0 chr9 27389183 27389223 -114882221 + AT_rich Low_complexity Low_complexity 1 40 0 234 321 19 19 chr9 27389342 27389448 -114881996 + LTR48B LTR ERV1 1 106 -538 993 233 56 86 chr9 27389451 27389733 -114881711 + MER39 LTR ERV1 335 605 -102 2081 118 16 0 chr9 27389733 27390038 -114881406 - AluSg SINE Alu 0 310 1 993 233 56 86 chr9 27390038 27390129 -114881315 + MER39 LTR ERV1 605 697 -10 29 60 0 0 chr9 27390201 27390251 -114881193 + AT_rich Low_complexity Low_complexity 1 50 0 400 291 77 57 chr9 27390478 27390828 -114880616 - L1MEc LINE L1 -3516 2699 2343 965 198 84 0 chr9 27391066 27391303 -114880141 - L1MD3 LINE L1 -881 7114 6858 1139 261 35 0 chr9 27391308 27391678 -114879766 - L1M LINE L1 -836 5310 4944 464 283 31 19 chr9 27391692 27391851 -114879593 + L1MEc LINE L1 553 713 -5683 1125 304 35 29 chr9 27391865 27392356 -114879088 - L1MEc LINE L1 -5869 527 34 2161 92 3 41 chr9 27394380 27394696 -114876748 - AluSc SINE Alu 0 309 6 184 337 145 0 chr9 27395046 27395129 -114876315 + L2 LINE L2 3161 3255 -17 21 57 0 0 chr9 27395574 27395609 -114875835 + AT_rich Low_complexity Low_complexity 1 35 0 186 247 62 62 chr9 27395903 27396000 -114875444 - MIR SINE MIR -64 144 48 21 57 0 0 chr9 27396370 27396405 -114875039 + AT_rich Low_complexity Low_complexity 1 35 0 4516 239 93 49 chr9 27396441 27398402 -114873042 + L1M4 LINE L1 14 2059 -4587 340 326 94 45 chr9 27398411 27398678 -114872766 + L1M4 LINE L1 2205 2484 -4162 1690 186 18 0 chr9 27398778 27399063 -114872381 - AluJo SINE Alu -19 293 4 367 274 94 86 chr9 27399086 27399469 -114871975 + MLT1I LTR MaLR 1 386 -23 24 32 0 0 chr9 27399566 27399597 -114871847 + AT_rich Low_complexity Low_complexity 1 31 0 2263 124 16 24 chr9 27399845 27400223 -114871221 + THE1C LTR MaLR 1 375 0 8927 138 28 48 chr9 27400223 27401836 -114869608 + THE1C-int LTR MaLR 1 1580 0 1940 159 21 29 chr9 27401836 27402214 -114869230 + THE1C LTR MaLR 1 375 0 193 391 0 11 chr9 27402261 27402353 -114869091 - MIR SINE MIR 0 262 172 1681 186 139 16 chr9 27403673 27404054 -114867390 - MSTA LTR MaLR 0 428 1 8412 186 30 5 chr9 27404054 27405664 -114865780 - MSTA-int LTR MaLR 0 1651 1 1828 171 127 16 chr9 27405664 27406049 -114865395 - MSTA LTR MaLR 0 428 1 2266 119 0 0 chr9 27406137 27406447 -114864997 - AluSg SINE Alu 0 310 1 208 231 26 13 chr9 27407334 27407412 -114864032 + CT-rich Low_complexity Low_complexity 2 80 0 205 315 126 42 chr9 27408034 27408177 -114863267 - L2 LINE L2 0 3313 3159 342 331 16 16 chr9 27408400 27408524 -114862920 - MIR SINE MIR -121 141 18 4316 234 50 14 chr9 27409842 27412859 -114858585 - L1M4c LINE L1 -2511 3871 800 245 357 31 16 chr9 27413222 27413351 -114858093 - L1M4c LINE L1 -5756 547 417 1241 122 11 0 chr9 27413843 27414031 -114857413 - L1PA16 LINE L1 -259 5907 5718 313 297 64 64 chr9 27414045 27414328 -114857116 - L1MEd LINE L1 -5192 939 657 271 209 15 30 chr9 27414469 27414536 -114856908 - L1MEd LINE L1 -5476 643 578 1628 222 160 33 chr9 27414588 27415001 -114856443 + MLT2B2 LTR ERVL 3 481 -34 392 37 19 0 chr9 27415001 27415055 -114856389 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1628 222 160 33 chr9 27415055 27415096 -114856348 + MLT2B2 LTR ERVL 481 515 0 1607 186 7 0 chr9 27416690 27417000 -114854444 + AluJb SINE Alu 5 316 0 918 276 23 5 chr9 27417001 27417215 -114854229 - MER21B LTR ERV1 -631 232 15 462 187 0 0 chr9 27417223 27417314 -114854130 + (TA)n Simple_repeat Simple_repeat 2 92 0 1483 226 137 67 chr9 27417322 27417980 -114853464 + MER50 LTR ERV1 10 713 -21 1441 249 67 41 chr9 27418046 27418507 -114852937 + MER21B LTR ERV1 248 720 -143 4742 147 72 12 chr9 27418582 27419434 -114852010 + MER4D LTR ERV1 1 903 0 189 221 59 59 chr9 27419656 27419724 -114851720 + L2 LINE L2 1365 1432 -1882 249 277 116 26 chr9 27421205 27421360 -114850084 - MIR SINE MIR 0 262 94 202 295 7 81 chr9 27421410 27421559 -114849885 + MIR SINE MIR 67 204 -58 22 56 0 0 chr9 27422976 27423012 -114848432 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr9 27423068 27423099 -114848345 + AT_rich Low_complexity Low_complexity 1 31 0 9145 139 42 40 chr9 27423530 27426271 -114845173 - L1PA13 LINE L1 -1 6162 3424 516 179 17 0 chr9 27426284 27426399 -114845045 - L1 LINE L1 -2061 4085 3963 270 353 44 15 chr9 27428375 27428511 -114842933 - MIR SINE MIR -111 151 12 1215 201 37 13 chr9 27428814 27429112 -114842332 + AluJo SINE Alu 2 306 -6 629 302 68 14 chr9 27430812 27431034 -114840410 - MIR SINE MIR -26 236 3 2261 86 0 0 chr9 27431138 27431430 -114840014 - AluY SINE Alu -19 292 1 837 329 162 30 chr9 27431440 27432265 -114839179 + L3 LINE CR1 470 1403 -174 1813 164 0 7 chr9 27432682 27432980 -114838464 - AluSx SINE Alu -16 296 1 2214 127 22 14 chr9 27433037 27433398 -114838046 + THE1B LTR MaLR 1 364 0 320 328 78 36 chr9 27433692 27433884 -114837560 - MIR SINE MIR -7 255 56 342 0 0 0 chr9 27434397 27434435 -114837009 + (CA)n Simple_repeat Simple_repeat 2 39 0 227 284 12 25 chr9 27434872 27434953 -114836491 + MIR3 SINE MIR 125 204 -4 218 297 109 10 chr9 27435082 27435183 -114836261 + L2 LINE L2 3203 3313 0 243 0 0 0 chr9 27435486 27435513 -114835931 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 247 169 24 84 chr9 27435831 27435914 -114835530 - MIR SINE MIR -71 191 114 21 57 0 0 chr9 27437955 27437990 -114833454 + AT_rich Low_complexity Low_complexity 1 35 0 214 379 40 0 chr9 27438491 27438615 -114832829 - MIR3 SINE MIR -43 165 37 24 32 0 0 chr9 27439122 27439153 -114832291 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chr9 27439273 27439312 -114832132 + (GA)n Simple_repeat Simple_repeat 1 39 0 518 304 42 35 chr9 27439469 27439729 -114831715 - MIR SINE MIR 0 262 1 234 383 74 0 chr9 27441063 27441225 -114830219 - MIR SINE MIR 0 262 89 1625 170 30 7 chr9 27441644 27441944 -114829500 + AluJb SINE Alu 1 307 -5 454 61 0 192 chr9 27442423 27442465 -114828979 + MADE1 DNA Mariner 1 49 -31 821 36 0 9 chr9 27442465 27442575 -114828869 + (TTTTA)n Simple_repeat Simple_repeat 2 110 0 1868 75 43 53 chr9 27442577 27442859 -114828585 - AluY SINE Alu -30 281 3 454 61 0 192 chr9 27442859 27442912 -114828532 + MADE1 DNA Mariner 50 80 0 396 344 109 0 chr9 27443211 27443403 -114828041 + MIR SINE MIR 47 259 -3 339 277 77 32 chr9 27443810 27443965 -114827479 - MIR SINE MIR -68 194 33 4307 184 22 35 chr9 27444537 27445362 -114826082 - MER21B LTR ERV1 -49 814 1 1970 151 0 3 chr9 27445708 27446012 -114825432 - AluSx SINE Alu -9 303 1 21 0 0 0 chr9 27446164 27446185 -114825259 + AT_rich Low_complexity Low_complexity 1 21 0 1183 173 106 15 chr9 27446330 27446685 -114824759 + MSTC LTR MaLR 13 428 0 249 255 0 0 chr9 27447524 27447571 -114823873 + MIR3 SINE MIR 149 195 -13 407 354 35 31 chr9 27449051 27449305 -114822139 - MIR SINE MIR -6 256 2 356 191 79 34 chr9 27449597 27449686 -114821758 - MIR SINE MIR -50 212 120 193 233 33 89 chr9 27450609 27450699 -114820745 - MIR SINE MIR -72 190 106 424 231 0 0 chr9 27450773 27450851 -114820593 + Tigger3(Golem) DNA MER2_type 2 79 -2950 * 917 199 20 15 chr9 27450831 27451027 -114820417 + Tigger3(Golem) DNA MER2_type 2831 3027 -2 868 259 62 10 chr9 27451600 27451889 -114819555 + MER46C DNA MER2_type 5 308 -30 395 305 107 16 chr9 27452270 27452457 -114818987 + MIR SINE MIR 59 262 0 239 347 138 0 chr9 27453597 27453764 -114817680 + MIR SINE MIR 67 256 -6 563 335 8 20 chr9 27453978 27454223 -114817221 - MIR SINE MIR 0 262 21 1955 231 41 12 chr9 27454303 27454792 -114816652 - MLT1D LTR MaLR 0 505 3 274 221 86 36 chr9 27456505 27456645 -114814799 + L1MC5 LINE L1 7504 7650 -311 213 121 0 0 chr9 27456824 27456857 -114814587 + (CA)n Simple_repeat Simple_repeat 1 33 0 254 266 17 121 chr9 27456971 27457144 -114814300 + MIR SINE MIR 61 215 -47 354 250 9 43 chr9 27457862 27457878 -114813566 - L1MA10 LINE L1 -52 6282 6267 2724 242 34 37 chr9 27457878 27458695 -114812749 - L1ME1 LINE L1 -55 6111 5297 262 178 37 37 chr9 27458837 27458944 -114812500 + L1MEc LINE L1 1004 1110 -5286 1047 196 19 44 chr9 27458950 27459220 -114812224 - L1MA10 LINE L1 -2026 4120 3858 * 4980 201 38 28 chr9 27459215 27460552 -114810892 + L1MA10 LINE L1 4126 5448 -886 1971 137 3 6 chr9 27460552 27460865 -114810579 + AluSq SINE Alu 1 312 -1 4980 201 38 28 chr9 27460865 27461046 -114810398 + L1MA10 LINE L1 5448 5626 -708 3687 126 11 28 chr9 27461046 27461656 -114809788 - MER4A LTR ERV1 0 600 1 4980 201 38 28 chr9 27461656 27462318 -114809126 + L1MA10 LINE L1 5626 6323 -11 296 195 58 35 chr9 27462425 27462512 -114808932 + L1MEc LINE L1 1789 1877 -4519 * 1968 257 65 48 chr9 27462510 27463253 -114808191 - L1MEc LINE L1 -5608 788 34 28 29 0 0 chr9 27464313 27464348 -114807096 + AT_rich Low_complexity Low_complexity 1 35 0 304 244 12 0 chr9 27465087 27465169 -114806275 - L1MC4a LINE L1 -1875 5933 5851 268 274 42 32 chr9 27465857 27465952 -114805492 + L2 LINE L2 3208 3303 -10 21 0 0 0 chr9 27466937 27466958 -114804486 + AT_rich Low_complexity Low_complexity 1 21 0 425 338 87 14 chr9 27467476 27467683 -114803761 - MIR SINE MIR -3 259 38 557 259 85 36 chr9 27467758 27467980 -114803464 - MIR SINE MIR 0 262 31 825 185 67 0 chr9 27468050 27468228 -114803216 - L1MA4 LINE L1 0 6300 6111 487 282 106 12 chr9 27468250 27468420 -114803024 - MIR SINE MIR 0 262 77 269 365 73 7 chr9 27468869 27469006 -114802438 + MIR SINE MIR 51 196 -66 641 246 63 34 chr9 27469145 27469352 -114802092 + MIR SINE MIR 50 262 0 2554 50 0 0 chr9 27474130 27474430 -114797014 - AluY SINE Alu -9 302 3 245 299 43 22 chr9 27474869 27475053 -114796391 - L1M4 LINE L1 -3528 2618 2431 21 82 0 0 chr9 27475466 27475515 -114795929 + AT_rich Low_complexity Low_complexity 1 49 0 226 213 64 32 chr9 27475521 27475615 -114795829 - MER103 DNA DNA -4 162 66 1027 181 6 0 chr9 27476767 27476938 -114794506 + MER2 DNA MER2_type 2 173 -172 183 162 0 0 chr9 27477004 27477041 -114794403 + T-rich Low_complexity Low_complexity 1 37 0 1048 179 0 6 chr9 27477048 27477227 -114794217 - AluJb SINE Alu -124 188 11 407 195 24 12 chr9 27477264 27477346 -114794098 + MER2 DNA MER2_type 263 345 0 489 301 76 65 chr9 27477871 27478147 -114793297 + MLT1K LTR MaLR 310 588 0 422 344 23 0 chr9 27479625 27479756 -114791688 - MIR3 SINE MIR -11 197 64 22 0 0 0 chr9 27481819 27481841 -114789603 + AT_rich Low_complexity Low_complexity 1 22 0 336 148 0 0 chr9 27483206 27483267 -114788177 + (TC)n Simple_repeat Simple_repeat 1 61 0 7080 6 0 0 chr9 27483625 27484418 -114787026 - L1HS LINE L1 0 6155 5363 1962 29 0 0 chr9 27484417 27484662 -114786782 + L1HS LINE L1 5106 5350 -796 * 350 130 19 0 chr9 27484846 27484900 -114786544 - Charlie8 DNA MER1_type -1003 1414 1360 2145 97 4 0 chr9 27485003 27485282 -114786162 - AluSg SINE Alu -28 282 3 204 314 186 17 chr9 27485850 27485968 -114785476 + MIR3 SINE MIR 34 171 -37 240 304 169 30 chr9 27486127 27486364 -114785080 - L2 LINE L2 -1020 2294 2025 222 128 0 0 chr9 27586856 27586895 -114684549 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 420 264 28 9 chr9 27586907 27587013 -114684431 - L2 LINE L2 -14 3299 3192 191 373 144 5 chr9 27587070 27587271 -114684173 + L2 LINE L2 2612 2840 -474 207 368 11 0 chr9 27587364 27587459 -114683985 + L2 LINE L2 2946 3041 -231 2150 113 3 0 chr9 27587784 27588077 -114683367 - AluSg SINE Alu -16 294 1 22 0 0 0 chr9 27588086 27588108 -114683336 + AT_rich Low_complexity Low_complexity 1 22 0 367 273 49 55 chr9 27588658 27588841 -114682603 + L3 LINE CR1 1253 1434 -143 21 36 0 0 chr9 27589269 27589297 -114682147 + AT_rich Low_complexity Low_complexity 1 28 0 970 251 69 30 chr9 27591017 27592003 -114679441 + L1MC4 LINE L1 5803 6847 -1195 3600 252 56 28 chr9 27592156 27593306 -114678138 + L1MC4a LINE L1 6627 7808 0 355 310 50 50 chr9 27593676 27593818 -114677626 + L1M4 LINE L1 2337 2481 -3665 968 237 7 106 chr9 27593818 27594223 -114677221 - MLT1A1 LTR MaLR 0 365 1 355 310 50 50 chr9 27594223 27594322 -114677122 + L1M4 LINE L1 2480 2578 -3568 28 29 0 0 chr9 27594957 27594992 -114676452 + AT_rich Low_complexity Low_complexity 1 35 0 2075 114 0 7 chr9 27595170 27595467 -114675977 - AluSc SINE Alu -14 295 1 1923 265 74 23 chr9 27598453 27599295 -114672149 + L1ME3A LINE L1 5258 6122 -48 764 132 18 0 chr9 27599438 27599552 -114671892 - MSTD LTR MaLR 0 396 281 35 24 0 0 chr9 27600013 27600055 -114671389 + AT_rich Low_complexity Low_complexity 1 42 0 2249 95 7 0 chr9 27600415 27600721 -114670723 + AluY SINE Alu 1 308 -3 334 320 35 23 chr9 27602004 27602260 -114669184 - MIR SINE MIR -2 260 2 779 242 166 39 chr9 27602922 27603504 -114667940 - LTR50 LTR ERVL 0 795 43 1188 155 183 68 chr9 27603504 27603826 -114667618 + THE1C LTR MaLR 4 373 -2 207 0 0 0 chr9 27603912 27603935 -114667509 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 834 345 92 22 chr9 27604330 27604478 -114666966 - L2 LINE L2 -4 3309 3173 1021 205 149 13 chr9 27604478 27604780 -114666664 - MER2 DNA MER2_type 0 344 2 834 345 92 22 chr9 27604780 27605147 -114666297 - L2 LINE L2 -140 3173 2764 477 296 44 6 chr9 27605293 27605452 -114665992 + MLT1I LTR MaLR 243 407 -2 288 91 0 0 chr9 27606234 27606278 -114665166 + (TC)n Simple_repeat Simple_repeat 1 44 0 1365 176 15 27 chr9 27606282 27606543 -114664901 - AluJo SINE Alu -30 282 25 197 275 145 0 chr9 27606609 27606678 -114664766 + L2 LINE L2 3185 3263 -9 183 80 0 0 chr9 27606679 27606704 -114664740 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 191 265 176 59 chr9 27608433 27608569 -114662875 + MIR SINE MIR 1 152 -110 218 205 0 0 chr9 27609099 27609138 -114662306 + GA-rich Low_complexity Low_complexity 2 40 0 290 302 43 17 chr9 27609841 27609957 -114661487 - MIR SINE MIR -68 194 76 204 315 0 51 chr9 27609991 27610102 -114661342 - MIR SINE MIR -100 108 8 2377 59 0 3 chr9 27610284 27610587 -114660857 + AluY SINE Alu 1 302 -9 4987 204 20 9 chr9 27610623 27611694 -114659750 - Tigger6a DNA MER2_type 0 1083 1 21 0 0 0 chr9 27611787 27611808 -114659636 + AT_rich Low_complexity Low_complexity 1 21 0 788 201 0 0 chr9 27611866 27612005 -114659439 + FRAM SINE Alu 8 146 -30 383 294 8 25 chr9 27612333 27612452 -114658992 - MIR SINE MIR -61 201 85 491 355 150 24 chr9 27613373 27614566 -114656878 + L2 LINE L2 1430 2772 -542 185 311 144 0 chr9 27614861 27614951 -114656493 + L2 LINE L2 2950 3052 -261 1777 150 3 29 chr9 27614954 27615260 -114656184 + AluSx SINE Alu 1 298 -14 619 280 57 14 chr9 27617670 27617893 -114653551 + MIR SINE MIR 16 245 -17 307 271 10 21 chr9 27618109 27618205 -114653239 - MLT1H1 LTR MaLR -43 512 418 289 288 12 12 chr9 27618434 27618514 -114652930 - MLT1H1 LTR MaLR -374 181 102 1979 103 43 0 chr9 27618567 27618849 -114652595 + AluSg SINE Alu 5 298 -12 10031 79 3 2 chr9 27619081 27620432 -114651012 + L1P LINE L1 6 1357 -4789 2406 53 0 3 chr9 27620954 27621256 -114650188 + AluY SINE Alu 1 301 -10 286 257 64 46 chr9 27621346 27621455 -114649989 + MER110-int LTR ERV1 1790 1900 -2747 285 292 0 0 chr9 27621492 27621564 -114649880 + MER110-int LTR ERV1 2000 2071 -2576 1173 323 72 20 chr9 27621747 27622258 -114649186 + MER110-int LTR ERV1 2254 2791 -1856 305 159 16 0 chr9 27622600 27622663 -114648781 + GA-rich Low_complexity Low_complexity 3 66 0 858 213 96 106 chr9 27622779 27623376 -114648068 + LTR49 LTR ERV1 5 595 0 242 345 69 9 chr9 27623454 27623570 -114647874 - MER5A DNA MER1_type -64 125 3 1349 269 76 21 chr9 27623791 27624318 -114647126 + LTR38 LTR ERV1 1 556 0 24 0 0 0 chr9 27624555 27624579 -114646865 + AT_rich Low_complexity Low_complexity 1 24 0 901 202 30 103 chr9 27625350 27625652 -114645792 - MER67D LTR ERV1 -234 280 1 353 318 47 12 chr9 27626697 27626867 -114644577 + MIR SINE MIR 42 210 -52 369 43 0 0 chr9 27627272 27627319 -114644125 + (TG)n Simple_repeat Simple_repeat 1 47 0 1346 175 18 119 chr9 27627752 27628151 -114643293 - MLT1A1 LTR MaLR 0 365 13 698 205 16 0 chr9 27628169 27628296 -114643148 + Tigger1 DNA MER2_type 15 143 -2275 1024 163 48 14 chr9 27628299 27628508 -114642936 + Tigger1 DNA MER2_type 2203 2418 0 22 56 0 0 chr9 27629004 27629040 -114642404 + AT_rich Low_complexity Low_complexity 1 36 0 199 314 43 14 chr9 27630157 27630227 -114641217 + MER5B DNA MER1_type 3 74 -104 6995 32 0 2 chr9 27630525 27631361 -114640083 - L1PA3 LINE L1 0 6155 5322 280 77 0 0 chr9 27631339 27631378 -114640066 + L1P LINE L1 2680 2718 -3428 * 393 264 0 0 chr9 27631475 27631562 -114639882 + MER81 DNA DNA 1 87 -27 261 182 45 27 chr9 27632468 27632578 -114638866 + (CATATA)n Simple_repeat Simple_repeat 2 113 0 539 279 110 43 chr9 27632611 27632796 -114638648 - L1ME LINE L1 -519 5645 5474 222 37 0 0 chr9 27632796 27632823 -114638621 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2254 92 0 0 chr9 27632826 27633118 -114638326 - AluSg SINE Alu -18 292 1 539 279 110 43 chr9 27633118 27633570 -114637874 - L1ME LINE L1 -691 5473 4962 2152 201 50 7 chr9 27633570 27634013 -114637431 + MLT1C LTR MaLR 1 462 -5 1972 151 22 22 chr9 27634073 27634437 -114637007 - THE1B LTR MaLR 0 364 1 331 300 15 10 chr9 27634760 27634960 -114636484 - L1ME LINE L1 -1542 4604 4404 21 36 0 0 chr9 27636375 27636403 -114635041 + AT_rich Low_complexity Low_complexity 1 28 0 35 54 0 0 chr9 27636603 27636659 -114634785 + AT_rich Low_complexity Low_complexity 1 56 0 260 328 46 30 chr9 27637210 27637341 -114634103 - L3b LINE CR1 -4 1579 1447 26 30 0 0 chr9 27637701 27637734 -114633710 + AT_rich Low_complexity Low_complexity 1 33 0 198 403 14 14 chr9 27637858 27638002 -114633442 + L2 LINE L2 2307 2450 -864 491 315 107 0 chr9 27638033 27638211 -114633233 - MIR SINE MIR -38 224 28 381 258 177 0 chr9 27638430 27638554 -114632890 - MIR SINE MIR -6 256 111 24 0 0 0 chr9 27639904 27639928 -114631516 + AT_rich Low_complexity Low_complexity 1 24 0 330 266 138 9 chr9 27640636 27640745 -114630699 - L2 LINE L2 -24 3289 3167 284 129 71 24 chr9 27643298 27643383 -114628061 + CT-rich Low_complexity Low_complexity 3 91 0 1297 222 116 6 chr9 27643549 27643860 -114627584 + MLT1B-int LTR MaLR 955 1299 -72 552 331 62 6 chr9 27643834 27644012 -114627432 - L1MDa LINE L1 -5735 805 618 * 293 225 67 22 chr9 27644035 27644124 -114627320 - L1MDa LINE L1 -6069 471 379 * 355 196 11 22 chr9 27644121 27644213 -114627231 + MLT1B-int LTR MaLR 1644 1734 -1 1528 209 59 17 chr9 27644214 27644569 -114626875 + MLT1B LTR MaLR 1 370 -20 6337 243 82 31 chr9 27644581 27646920 -114624524 + L1MDa LINE L1 123 2718 -3822 1147 279 56 17 chr9 27647026 27647489 -114623955 + L1MDa LINE L1 3313 3756 -2784 1382 184 26 43 chr9 27647489 27647793 -114623651 - AluJo SINE Alu -13 299 1 1147 279 56 17 chr9 27647793 27647806 -114623638 + L1MDa LINE L1 3756 3767 -2773 354 23 0 0 chr9 27647806 27647849 -114623595 + (CA)n Simple_repeat Simple_repeat 2 44 0 1147 279 56 17 chr9 27647849 27648010 -114623434 + L1MDa LINE L1 3767 3976 -2564 830 327 35 53 chr9 27648025 27648477 -114622967 + L1M2a LINE L1 1 444 -6724 * 3235 266 84 31 chr9 27648451 27650402 -114621042 + L1M2a LINE L1 1568 3222 -3947 23338 152 11 70 chr9 27650428 27657004 -114614440 + L1PA8 LINE L1 1 6487 0 3119 258 88 6 chr9 27656999 27658096 -114613348 + L1M2a LINE L1 3223 4409 -2758 * 270 118 0 227 chr9 27658097 27658207 -114613237 + MLT2C2 LTR ERVL 407 464 0 317 327 59 56 chr9 27658217 27658523 -114612921 - HAL1 LINE L1 -952 1555 1249 384 248 32 89 chr9 27658583 27658740 -114612704 - MLT1I LTR MaLR -235 174 27 482 329 98 37 chr9 27659100 27659510 -114611934 - HAL1 LINE L1 -2044 463 29 29 47 0 0 chr9 27659777 27659820 -114611624 + AT_rich Low_complexity Low_complexity 1 43 0 220 341 80 0 chr9 27659881 27659969 -114611475 + L2 LINE L2 3185 3279 -34 553 327 179 35 chr9 27660350 27660470 -114610974 - L2 LINE L2 -5 3308 3207 3647 109 79 0 chr9 27660470 27661028 -114610416 - LTR43 LTR ERV1 0 602 1 553 327 179 35 chr9 27661028 27661423 -114610021 - L2 LINE L2 -106 3207 2722 308 293 29 69 chr9 27661723 27661897 -114609547 + L1M2a LINE L1 4862 5028 -2139 516 237 258 42 chr9 27661972 27662027 -114609417 + MLT1E1 LTR MaLR 3 45 -609 315 0 0 0 chr9 27662027 27662062 -114609382 + (CA)n Simple_repeat Simple_repeat 2 36 0 516 237 258 42 chr9 27662062 27662196 -114609248 + MLT1E1 LTR MaLR 45 233 -421 484 184 10 0 chr9 27662202 27662300 -114609144 + MLT1E3 LTR MaLR 526 624 0 209 320 148 23 chr9 27662583 27662839 -114608605 + L2 LINE L2 3020 3307 -6 1999 184 6 0 chr9 27665512 27665876 -114605568 - MER47A DNA MER2_type 0 366 1 215 173 19 0 chr9 27666553 27666605 -114604839 + (CA)n Simple_repeat Simple_repeat 2 54 0 239 266 101 46 chr9 27667717 27667826 -114603618 + MIR SINE MIR 110 224 -38 420 248 39 39 chr9 27668245 27668398 -114603046 - MER5A DNA MER1_type 0 189 37 320 301 46 64 chr9 27668247 27668420 -114603024 + MER5A DNA MER1_type 17 186 -3 * 23 0 0 0 chr9 27669590 27669613 -114601831 + AT_rich Low_complexity Low_complexity 1 23 0 300 283 54 42 chr9 27669709 27669909 -114601535 + MIR SINE MIR 15 221 -41 309 51 0 0 chr9 27670218 27670257 -114601187 + (CA)n Simple_repeat Simple_repeat 2 40 0 274 146 0 0 chr9 27671794 27671835 -114599609 - tRNA-Lys-AAG tRNA tRNA -34 42 2 444 218 164 72 chr9 27672072 27672407 -114599037 + L1ME3A LINE L1 5735 6100 -70 2200 105 0 7 chr9 27672778 27673073 -114598371 - AluSg SINE Alu -17 293 1 257 318 39 84 chr9 27673102 27673256 -114598188 + L2 LINE L2 3124 3270 -2 246 48 0 0 chr9 27673501 27673543 -114597901 - LTR66 LTR ERVL -171 439 398 246 48 0 0 chr9 27673511 27673553 -114597891 + LTR66 LTR ERVL 398 439 -171 327 311 0 0 chr9 27673561 27673651 -114597793 + L1MC4 LINE L1 6614 6703 -1339 * 335 300 0 0 chr9 27673621 27673651 -114597793 + L1MC4 LINE L1 6614 6643 -1399 225 154 0 0 chr9 27673651 27673690 -114597754 + (TG)n Simple_repeat Simple_repeat 1 39 0 429 70 0 0 chr9 27673690 27673747 -114597697 + (TA)n Simple_repeat Simple_repeat 2 58 0 335 300 0 0 chr9 27673690 27673711 -114597733 + L1MC4 LINE L1 6642 6703 -1339 27 49 0 0 chr9 27675840 27675881 -114595563 + AT_rich Low_complexity Low_complexity 1 41 0 357 295 84 54 chr9 27676239 27676500 -114594944 - L1MDa LINE L1 -4702 1838 1570 1196 248 114 72 chr9 27676534 27677102 -114594342 - MLT1E2 LTR MaLR -31 594 2 1259 264 88 35 chr9 27677108 27677736 -114593708 - L1MDa LINE L1 -5105 1616 956 472 300 8 0 chr9 27677750 27677880 -114593564 - L2 LINE L2 -947 2367 2237 835 215 58 6 chr9 27678015 27678187 -114593257 + MER5A DNA MER1_type 7 187 -2 211 309 41 31 chr9 27678233 27678330 -114593114 - L2 LINE L2 -243 3029 2932 1468 111 214 12 chr9 27679520 27679772 -114591672 - AluSg1 SINE Alu -6 303 1 333 318 97 41 chr9 27681712 27681944 -114589500 + MLT1L LTR MaLR 201 465 -150 1724 138 34 18 chr9 27681944 27682271 -114589173 + L1MA9 LINE L1 5979 6310 -2 333 318 97 41 chr9 27682271 27682431 -114589013 + MLT1L LTR MaLR 465 615 0 1398 245 50 67 chr9 27683244 27683799 -114587645 - L1ME3 LINE L1 -14 6148 5603 577 258 0 7 chr9 27683851 27684002 -114587442 - L1ME3 LINE L1 -1292 4854 4705 439 240 13 20 chr9 27684081 27684231 -114587213 - L1ME3 LINE L1 -1567 4579 4431 2613 45 0 0 chr9 27684246 27684557 -114586887 - AluY SINE Alu 0 311 1 334 279 81 54 chr9 27684565 27684787 -114586657 - L1ME3 LINE L1 -1979 4167 3940 597 329 35 16 chr9 27684842 27685155 -114586289 + L1MEc LINE L1 92 410 -5986 1579 245 96 10 chr9 27685239 27685729 -114585715 + LTR48B LTR ERV1 108 639 -5 1000 219 76 106 chr9 27685750 27685801 -114585643 - MLT1A2 LTR MaLR -5 369 318 1969 161 21 15 chr9 27685801 27686136 -114585308 + MER1B DNA MER1_type 1 337 0 1000 219 76 106 chr9 27686136 27686441 -114585003 - MLT1A2 LTR MaLR -56 318 24 3870 222 19 9 chr9 27687878 27688885 -114582559 + L1 LINE L1 2861 3877 -2269 5693 138 196 9 chr9 27689005 27690119 -114581325 - L1PBa LINE L1 -4903 1960 639 1100 190 0 0 chr9 27690116 27690316 -114581128 - L1PBa LINE L1 -6661 202 3 * 22 35 0 0 chr9 27691093 27691122 -114580322 + AT_rich Low_complexity Low_complexity 1 29 0 2850 151 86 10 chr9 27692140 27692843 -114578601 - L1PBa LINE L1 -3733 3129 2372 1635 197 45 28 chr9 27693323 27693473 -114577971 + L1M1 LINE L1 2890 3036 -4529 1447 164 80 52 chr9 27693473 27693838 -114577606 - THE1C LTR MaLR 0 375 1 1635 197 45 28 chr9 27693838 27694403 -114577041 + L1M1 LINE L1 3036 3939 -3626 9431 130 30 6 chr9 27694503 27695929 -114575515 - THE1B-int LTR MaLR -120 1460 1 1942 175 11 16 chr9 27695929 27696295 -114575149 - THE1B LTR MaLR 0 364 1 1929 174 0 0 chr9 27696885 27697196 -114574248 - AluJo SINE Alu -1 311 1 1961 174 93 53 chr9 27697306 27697698 -114573746 - MER67D LTR ERV1 0 514 96 1616 122 122 7 chr9 27697698 27697969 -114573475 + AluSx SINE Alu 1 302 0 1961 174 93 53 chr9 27697969 27698070 -114573374 - MER67D LTR ERV1 -418 96 1 302 312 136 7 chr9 27698152 27698306 -114573138 - MIR SINE MIR -84 178 5 338 313 68 0 chr9 27698624 27698787 -114572657 - MIR SINE MIR 0 262 89 368 258 0 10 chr9 27698933 27699030 -114572414 + MER34 LTR ERV1 1 96 -446 1598 227 91 28 chr9 27699035 27699498 -114571946 + LTR48B LTR ERV1 151 642 -2 24 85 0 0 chr9 27699690 27699749 -114571695 + AT_rich Low_complexity Low_complexity 1 59 0 622 237 131 44 chr9 27699913 27700415 -114571029 + LTR48 LTR ERV1 157 787 0 210 71 0 0 chr9 27700516 27700544 -114570900 + (A)n Simple_repeat Simple_repeat 1 28 0 299 289 22 0 chr9 27700763 27700853 -114570591 + MLT1I LTR MaLR 19 110 -299 388 254 192 8 chr9 27700933 27701063 -114570381 + MER5A DNA MER1_type 30 183 -6 548 240 101 29 chr9 27701085 27701293 -114570151 + MLT1I LTR MaLR 186 408 -1 379 281 79 0 chr9 27702255 27702369 -114569075 - L2 LINE L2 0 3313 3191 4887 89 43 98 chr9 27703307 27704181 -114567263 - LTR12 LTR ERV1 0 826 1 560 306 81 67 chr9 27704847 27705144 -114566300 - LTR16C LTR ERVL 0 491 191 6719 70 3 26 chr9 27705154 27706319 -114565125 - L1PA7 LINE L1 0 6154 5013 2319 95 0 0 chr9 27706319 27706614 -114564830 - AluY SINE Alu -14 297 3 6719 70 3 26 chr9 27706614 27707137 -114564307 - L1PA7 LINE L1 -1141 5013 4479 995 188 53 41 chr9 27707484 27707803 -114563641 - MER33 DNA MER1_type -1 323 1 1420 263 126 17 chr9 27708169 27708636 -114562808 + MLT1F LTR MaLR 25 542 0 428 273 50 25 chr9 27709820 27709981 -114561463 - MIR SINE MIR -90 172 8 1597 52 10 0 chr9 27710123 27710316 -114561128 + AluY SINE Alu 99 293 -18 2093 130 3 0 chr9 27710850 27711150 -114560294 - AluJb SINE Alu -7 305 5 377 302 37 73 chr9 27712145 27712473 -114558971 + MLT1H LTR MaLR 53 368 -181 1838 107 0 0 chr9 27712692 27712955 -114558489 - AluSx SINE Alu 0 310 48 21 0 0 0 chr9 27713024 27713045 -114558399 + AT_rich Low_complexity Low_complexity 1 21 0 583 319 117 36 chr9 27714220 27714580 -114556864 - L2 LINE L2 -5 3308 2920 233 212 106 15 chr9 27714870 27714936 -114556508 - LTR33A LTR ERVL 0 523 452 229 240 106 87 chr9 27714997 27715101 -114556343 - MLT2E LTR ERVL -491 137 32 2611 310 74 23 chr9 27715536 27715651 -114555793 - ERVL LTR ERVL -431 5333 5225 1973 176 12 6 chr9 27715651 27715997 -114555447 + MER7A DNA MER2_type 1 346 0 2611 310 74 23 chr9 27715997 27717013 -114554431 - ERVL LTR ERVL -539 5225 4144 1944 181 109 8 chr9 27717264 27717739 -114553705 - L1MA9 LINE L1 -1 6311 5789 6400 141 34 13 chr9 27717748 27719206 -114552238 - L1MA2 LINE L1 0 7723 6243 981 198 28 4 chr9 27719198 27719445 -114551999 - L1MA2 LINE L1 -2972 4593 4341 * 2847 131 27 17 chr9 27719479 27719959 -114551485 - L1PA13 LINE L1 0 6163 5679 847 76 8 0 chr9 27719959 27720077 -114551367 + L1P4 LINE L1 5609 5727 -436 * 17972 171 67 29 chr9 27720074 27721823 -114549621 - L1MA2 LINE L1 -3215 4350 2669 1966 122 15 0 chr9 27721823 27722094 -114549350 + AluSx SINE Alu 2 276 -36 17972 171 67 29 chr9 27722094 27724516 -114546928 - L1MA2 LINE L1 -4896 2669 15 3853 178 42 11 chr9 27724532 27725812 -114545632 - L1M2 LINE L1 -514 5798 4486 1772 170 3 3 chr9 27725816 27726104 -114545340 - AluSx SINE Alu -24 288 1 14459 162 41 14 chr9 27726489 27729135 -114542309 - Tigger2 DNA MER2_type 0 2718 2 213 180 16 16 chr9 27729141 27729202 -114542242 + (TA)n Simple_repeat Simple_repeat 1 61 0 1326 315 55 49 chr9 27729202 27729913 -114541531 - ERVL LTR ERVL -2180 3474 2760 2308 81 7 3 chr9 27731636 27731946 -114539498 + AluY SINE Alu 1 311 0 180 152 0 0 chr9 27732238 27732271 -114539173 + (TAA)n Simple_repeat Simple_repeat 1 33 0 26 0 0 0 chr9 27732420 27732446 -114538998 + AT_rich Low_complexity Low_complexity 1 26 0 586 349 56 45 chr9 27732980 27733358 -114538086 - L2 LINE L2 -1 3271 2890 229 333 42 33 chr9 27733880 27734000 -114537444 - MIR SINE MIR -10 252 132 22 35 0 0 chr9 27734801 27734830 -114536614 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 27736865 27736887 -114534557 + AT_rich Low_complexity Low_complexity 1 22 0 325 224 82 12 chr9 27737433 27737518 -114533926 - MER91C DNA MER1_type -1 139 49 271 284 71 57 chr9 27737839 27737980 -114533464 - MIR SINE MIR -109 153 11 2612 165 8 4 chr9 27738900 27739373 -114532071 + L1MA5 LINE L1 5826 6300 0 243 170 0 0 chr9 27741019 27741066 -114530378 + A-rich Low_complexity Low_complexity 1 47 0 39 22 0 0 chr9 27741919 27741965 -114529479 + AT_rich Low_complexity Low_complexity 1 46 0 978 303 41 16 chr9 27742323 27742686 -114528758 + L1MEd LINE L1 11 382 -5737 535 315 38 40 chr9 27742797 27743168 -114528276 + L1MEd LINE L1 532 901 -5218 584 134 21 10 chr9 27743255 27743352 -114528092 + MER4A LTR ERV1 1 98 -566 1837 139 6 24 chr9 27743352 27743703 -114527741 + MER4A LTR ERV1 261 664 0 10518 123 193 130 chr9 27743706 27746336 -114525108 + MER4A-int LTR ERV1 1 2906 -3692 193 28 0 56 chr9 27746336 27746372 -114525072 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 10518 123 193 130 chr9 27746372 27747214 -114524230 + MER4A-int LTR ERV1 2906 3693 -2905 * 15023 112 44 17 chr9 27747197 27749791 -114521653 + MER4A-int LTR ERV1 3838 6593 -5 585 143 0 0 chr9 27749805 27749896 -114521548 + MER4A LTR ERV1 8 98 -566 1892 131 3 23 chr9 27749896 27750238 -114521206 + MER4A LTR ERV1 263 664 0 505 270 82 30 chr9 27750239 27750472 -114520972 + L1MEd LINE L1 985 1229 -4890 1488 192 0 55 chr9 27750516 27750824 -114520620 - AluJo SINE Alu -21 291 1 2093 77 7 0 chr9 27751110 27751396 -114520048 - L1PA7 LINE L1 -3 6151 5864 2188 62 3 0 chr9 27751396 27751684 -114519760 + L1P LINE L1 4369 4657 -1489 183 260 0 20 chr9 27752735 27752785 -114518659 + MIR SINE MIR 100 148 -114 289 371 51 69 chr9 27752869 27753262 -114518182 + L2 LINE L2 2809 3194 -78 181 315 174 0 chr9 27754610 27754702 -114516742 + L2 LINE L2 3156 3263 -9 249 250 0 0 chr9 27754813 27754865 -114516579 + MER58A DNA MER1_type 28 79 -28 487 248 9 0 chr9 27754906 27755015 -114516429 + MER58A DNA MER1_type 82 191 -33 403 332 104 5 chr9 27755254 27755447 -114515997 + MIR SINE MIR 48 259 -3 22 0 0 0 chr9 27755642 27755664 -114515780 + AT_rich Low_complexity Low_complexity 1 22 0 1306 227 82 43 chr9 27756298 27756738 -114514706 + MSTB2 LTR MaLR 1 457 0 23 33 0 0 chr9 27756781 27756811 -114514633 + AT_rich Low_complexity Low_complexity 1 30 0 891 240 47 11 chr9 27756997 27757272 -114514172 + HAL1 LINE L1 2036 2320 -187 1557 185 39 13 chr9 27757274 27757582 -114513862 + L1PB4 LINE L1 5841 6156 0 226 152 0 0 chr9 27757590 27757636 -114513808 + HAL1 LINE L1 2306 2351 -156 1339 200 0 8 chr9 27757737 27757982 -114513462 + AluJb SINE Alu 4 246 -66 189 74 0 0 chr9 27758005 27758032 -114513412 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 22 35 0 0 chr9 27758061 27758090 -114513354 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr9 27758684 27758711 -114512733 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr9 27759360 27759388 -114512056 + AT_rich Low_complexity Low_complexity 1 28 0 221 339 60 120 chr9 27760348 27760799 -114510645 + L2 LINE L2 2826 3249 -23 580 242 16 0 chr9 27761121 27761245 -114510199 - FLAM_A SINE Alu -6 127 2 2214 104 0 0 chr9 27761251 27761548 -114509896 - AluY SINE Alu -14 297 1 606 239 0 22 chr9 27761569 27761707 -114509737 - FLAM_C SINE Alu -8 135 1 258 331 47 31 chr9 27761850 27761977 -114509467 + L2 LINE L2 3184 3312 -1 1623 93 161 4 chr9 27763733 27763981 -114507463 - AluSg1 SINE Alu -20 289 3 268 204 0 68 chr9 27764487 27764565 -114506879 + T-rich Low_complexity Low_complexity 1 83 -13 3049 169 31 44 chr9 27764565 27764758 -114506686 - L1PB3 LINE L1 -1 6153 5959 1605 171 190 11 chr9 27764758 27765121 -114506323 - MSTA LTR MaLR 0 428 1 8288 162 11 55 chr9 27765121 27766771 -114504673 - MSTA-int LTR MaLR 0 1580 3 1746 171 140 11 chr9 27766773 27767152 -114504292 - MSTA LTR MaLR 0 428 1 3049 169 31 44 chr9 27767152 27767634 -114503810 - L1PB3 LINE L1 -195 5959 5483 268 204 0 68 chr9 27767634 27767658 -114503786 + T-rich Low_complexity Low_complexity 83 96 0 6965 141 22 24 chr9 27768037 27769449 -114501995 - L1MA2 LINE L1 0 6304 4902 2900 115 9 0 chr9 27769449 27769883 -114501561 - L1PB2 LINE L1 -2 6149 5712 6965 141 22 24 chr9 27769883 27770657 -114500787 - L1MA2 LINE L1 -1402 4902 4128 31 26 0 0 chr9 27771046 27771084 -114500360 + AT_rich Low_complexity Low_complexity 1 38 0 216 356 9 17 chr9 27771290 27771405 -114500039 - MIR SINE MIR 0 262 149 278 300 97 3 chr9 27772734 27772873 -114498571 + MIR SINE MIR 6 152 -62 473 264 58 80 chr9 27773069 27773395 -114498049 - HAL1b LINE L1 -814 534 216 560 247 0 92 chr9 27773512 27773739 -114497705 + L1MC4 LINE L1 7816 8021 -21 2114 119 0 13 chr9 27773747 27774059 -114497385 - AluSc SINE Alu -1 308 1 302 341 47 0 chr9 27774160 27774289 -114497155 - MIR3 SINE MIR -14 194 60 580 278 98 0 chr9 27774377 27774550 -114496894 - MER58C DNA MER1_type 0 215 26 3191 222 65 42 chr9 27774765 27775468 -114495976 + L1MDb LINE L1 6 691 -5715 2142 130 16 0 chr9 27775468 27775775 -114495669 + AluSx SINE Alu 1 312 0 3191 222 65 42 chr9 27775775 27776630 -114494814 + L1MDb LINE L1 691 1732 -4674 1563 164 44 11 chr9 27776630 27776926 -114494518 + AluJb SINE Alu 1 305 0 3191 222 65 42 chr9 27776926 27777195 -114494249 + L1MDb LINE L1 1732 1993 -4413 520 258 65 41 chr9 27777203 27777494 -114493950 + L1MDb LINE L1 2071 2368 -4038 230 225 0 0 chr9 27777497 27777537 -114493907 - L1MD2 LINE L1 -297 6062 6023 * 595 236 48 36 chr9 27777536 27777786 -114493658 - L1M4 LINE L1 -1816 4330 4078 333 274 62 18 chr9 27778111 27778224 -114493220 - L2 LINE L2 -7 3306 3189 3589 179 38 95 chr9 27778345 27779414 -114492030 - L1MA9 LINE L1 -33 6279 5272 21 0 0 0 chr9 27779813 27779834 -114491610 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 27780724 27780752 -114490692 + AT_rich Low_complexity Low_complexity 1 28 0 204 345 103 9 chr9 27781568 27781684 -114489760 + L2 LINE L2 3187 3313 0 24 0 0 0 chr9 27782222 27782246 -114489198 + AT_rich Low_complexity Low_complexity 1 24 0 180 306 16 0 chr9 27782327 27782389 -114489055 + MIR SINE MIR 92 154 -108 2406 61 0 6 chr9 27782436 27782748 -114488696 + AluY SINE Alu 1 310 -1 1629 208 17 0 chr9 27782927 27783225 -114488219 - AluJb SINE Alu -9 303 1 585 79 83 0 chr9 27783270 27783539 -114487905 + (TA)n Simple_repeat Simple_repeat 1 291 0 338 101 76 8 chr9 27783550 27783669 -114487775 + (TA)n Simple_repeat Simple_repeat 2 128 0 4610 99 5 0 chr9 27783700 27784348 -114487096 + L1PA13 LINE L1 5494 6144 -19 191 267 151 12 chr9 27784387 27784473 -114486971 + MIR SINE MIR 164 261 -1 29 47 0 0 chr9 27784841 27784884 -114486560 + AT_rich Low_complexity Low_complexity 1 43 0 202 189 0 38 chr9 27785765 27785818 -114485626 + A-rich Low_complexity Low_complexity 6 56 0 319 301 26 59 chr9 27785829 27785982 -114485462 - MIR SINE MIR -67 195 48 219 302 135 24 chr9 27786033 27786159 -114485285 - L2 LINE L2 -38 3234 3095 347 363 119 12 chr9 27786373 27786533 -114484911 - MIR SINE MIR -65 197 21 290 276 58 35 chr9 27787053 27787140 -114484304 - L2 LINE L2 -37 3235 3147 408 309 56 8 chr9 27787637 27787763 -114483681 - L2 LINE L2 -12 3260 3129 425 289 0 0 chr9 27787895 27787992 -114483452 - MER5A DNA MER1_type -83 106 10 274 254 70 81 chr9 27788208 27788393 -114483051 - MER5A DNA MER1_type 0 189 7 203 360 122 45 chr9 27788418 27788834 -114482610 - L2 LINE L2 -569 2745 2363 2120 145 14 19 chr9 27788834 27789200 -114482244 - THE1B LTR MaLR 0 364 1 10947 102 28 8 chr9 27789202 27790749 -114480695 - THE1B-int LTR MaLR -2 1578 1 2275 139 8 16 chr9 27790749 27791116 -114480328 - THE1B LTR MaLR 0 364 1 203 360 122 45 chr9 27791116 27791161 -114480283 - L2 LINE L2 -950 2364 2244 2119 105 0 41 chr9 27791406 27791720 -114479724 + AluSq SINE Alu 1 301 -12 464 274 156 14 chr9 27792312 27792600 -114478844 + L1ME4a LINE L1 5746 6074 -47 798 226 54 5 chr9 27792775 27792961 -114478483 - MER72 LTR ERV1 -527 195 1 2602 138 24 0 chr9 27793925 27794339 -114477105 - MSTA LTR MaLR -4 424 1 725 271 10 10 chr9 27794662 27794854 -114476590 - MIR SINE MIR 0 262 71 180 365 81 14 chr9 27794861 27795009 -114476435 - MIR SINE MIR -57 205 48 2353 81 3 0 chr9 27795072 27795370 -114476074 + AluY SINE Alu 1 299 -12 3753 155 58 9 chr9 27795389 27796073 -114475371 - L1PA16 LINE L1 -9 6157 5440 3883 184 47 9 chr9 27796101 27797035 -114474409 + L1P LINE L1 4452 5420 -743 289 364 91 0 chr9 27797999 27798186 -114473258 - MIR SINE MIR 0 262 59 180 295 16 16 chr9 27798356 27798417 -114473027 - MIR SINE MIR -2 260 200 362 306 33 33 chr9 27798601 27798784 -114472660 + MLT1J2 LTR MaLR 266 448 -2 306 311 230 0 chr9 27798784 27798945 -114472499 - MIR SINE MIR -59 203 6 868 255 53 24 chr9 27799793 27800040 -114471404 - MIR SINE MIR -8 254 1 1584 192 15 29 chr9 27800383 27800740 -114470704 - MLT1A2 LTR MaLR 0 467 23 2209 108 3 0 chr9 27800957 27801253 -114470191 + AluSx SINE Alu 1 297 -15 329 317 80 43 chr9 27801353 27801564 -114469880 + MIR SINE MIR 45 262 0 242 240 20 0 chr9 27801599 27801649 -114469795 - L2 LINE L2 -5 3308 3258 789 322 111 23 chr9 27801906 27802304 -114469140 + L2 LINE L2 2266 2698 -616 200 163 23 0 chr9 27802483 27802526 -114468918 + (TA)n Simple_repeat Simple_repeat 1 44 0 549 110 0 0 chr9 27802564 27802646 -114468798 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 410 271 196 0 chr9 27804296 27804429 -114467015 + MIR SINE MIR 103 261 -1 299 317 93 33 chr9 27805235 27805418 -114466026 + L2 LINE L2 2651 2844 -470 302 247 79 0 chr9 27805442 27805531 -114465913 + MIR SINE MIR 166 261 -1 1214 55 0 7 chr9 27805679 27805706 -114465738 + L1P LINE L1 4194 4220 -1926 7336 42 0 7 chr9 27805706 27807351 -114464093 - L1PA5 LINE L1 -1 6153 4515 1214 55 0 7 chr9 27807351 27807498 -114463946 + L1P LINE L1 4220 4361 -1785 290 349 37 0 chr9 27807511 27807620 -114463824 + L2 LINE L2 3191 3303 -10 206 326 0 0 chr9 27807718 27807764 -114463680 - MIR SINE MIR -129 79 34 321 26 0 0 chr9 27807770 27807808 -114463636 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 230 433 39 0 chr9 27807921 27808048 -114463396 - L2 LINE L2 -215 3057 2926 1409 149 98 0 chr9 27809918 27810193 -114461251 + L1MB4 LINE L1 5869 6170 -10 271 336 19 28 chr9 27810396 27810503 -114460941 - L2 LINE L2 -1 3312 3207 180 290 0 32 chr9 27811318 27811380 -114460064 + L3b LINE CR1 1281 1340 -243 27 62 0 0 chr9 27811399 27811447 -114459997 + AT_rich Low_complexity Low_complexity 1 48 0 1526 253 107 36 chr9 27811821 27812411 -114459033 - LTR48B LTR ERV1 -6 638 7 27 49 0 0 chr9 27812669 27812710 -114458734 + AT_rich Low_complexity Low_complexity 1 41 0 297 358 18 17 chr9 27813930 27814082 -114457362 + MER5A DNA MER1_type 20 183 -6 24 53 0 0 chr9 27814887 27814925 -114456519 + AT_rich Low_complexity Low_complexity 1 38 0 605 348 62 51 chr9 27815061 27815957 -114455487 + L1M4 LINE L1 2128 3033 -3113 640 298 59 26 chr9 27815977 27816249 -114455195 + L1MB1 LINE L1 173 453 -5860 10891 230 58 32 chr9 27816712 27818016 -114453428 + L1MB1 LINE L1 801 2069 -4335 2398 63 0 7 chr9 27818016 27818319 -114453125 - AluY SINE Alu -10 301 1 10891 230 58 32 chr9 27818319 27819024 -114452420 + L1MB1 LINE L1 2069 2754 -3650 1178 150 55 9 chr9 27819024 27819244 -114452200 - MER30 DNA MER1_type 0 230 1 10891 230 58 32 chr9 27819244 27821949 -114449495 + L1MB1 LINE L1 2754 5570 -834 2021 161 0 0 chr9 27821949 27822260 -114449184 + AluSx SINE Alu 1 311 -1 10891 230 58 32 chr9 27822260 27823115 -114448329 + L1MB1 LINE L1 5570 6401 -3 336 361 110 5 chr9 27824463 27824682 -114446762 - MIR SINE MIR -2 260 19 20000 39 7 3 chr9 27824998 27828796 -114442648 - L1PA5 LINE L1 0 6154 2346 231 392 20 0 chr9 27831370 27831472 -114439972 - MIR SINE MIR -112 150 47 437 358 59 22 chr9 27831495 27831816 -114439628 + L1MEc LINE L1 109 441 -5955 427 268 115 27 chr9 27831978 27832422 -114439022 + L1MEc LINE L1 657 1139 -5066 1309 114 0 21 chr9 27832495 27832688 -114438756 + MER1B DNA MER1_type 87 275 -64 1124 293 46 27 chr9 27832711 27833339 -114438105 + L1MEc LINE L1 1214 1853 -4543 230 333 39 16 chr9 27834296 27834425 -114437019 + L1ME2 LINE L1 5574 5705 -2103 378 341 32 0 chr9 27834433 27834559 -114436885 + L3 LINE CR1 1437 1566 -11 202 273 30 0 chr9 27834588 27834654 -114436790 + (CAG)n Simple_repeat Simple_repeat 2 69 0 807 263 93 37 chr9 27835025 27835379 -114436065 - MLT1A2 LTR MaLR 0 374 1 2817 121 17 0 chr9 27835508 27835914 -114435530 + MLT2A2 LTR ERVL 1 413 -40 261 0 0 0 chr9 27835926 27835955 -114435489 + (CA)n Simple_repeat Simple_repeat 2 30 0 489 184 0 20 chr9 27835980 27836127 -114435317 + (TA)n Simple_repeat Simple_repeat 1 144 0 303 275 11 11 chr9 27836129 27836220 -114435224 + L1MC4 LINE L1 6612 6702 -1340 373 71 24 106 chr9 27836223 27836267 -114435177 + MLT2A2 LTR ERVL 376 411 -42 390 55 0 41 chr9 27836267 27836340 -114435104 + (TA)n Simple_repeat Simple_repeat 2 71 0 373 71 24 106 chr9 27836340 27836380 -114435064 + MLT2A2 LTR ERVL 411 453 0 373 294 75 10 chr9 27837266 27837467 -114433977 + L1MC4a LINE L1 5617 5830 -1978 314 297 44 88 chr9 27837516 27837765 -114433679 + L1ME2 LINE L1 5854 6091 -73 432 276 112 0 chr9 27837769 27837885 -114433559 - FLAM_A SINE Alu -3 130 2 233 94 0 0 chr9 27837888 27837920 -114433524 + HsTC2 DNA Tc2 32 63 -1835 381 168 168 0 chr9 27837977 27838084 -114433360 + HsTC2 DNA Tc2 1656 1780 -118 983 276 74 35 chr9 27838094 27838674 -114432770 + L1MEc LINE L1 1859 2461 -3935 1910 274 98 19 chr9 27838775 27839758 -114431686 + L1MEc LINE L1 3550 4609 -1606 19893 168 25 22 chr9 27839760 27840032 -114431412 - L1MA1 LINE L1 0 7721 7451 2021 75 0 11 chr9 27840032 27840298 -114431146 - AluY SINE Alu 0 311 49 2053 88 0 0 chr9 27840299 27840561 -114430883 - AluY SINE Alu -49 262 1 19893 168 25 22 chr9 27840561 27841931 -114429513 - L1MA1 LINE L1 -270 7451 6086 246 95 0 0 chr9 27841931 27841973 -114429471 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 19893 168 25 22 chr9 27841973 27846259 -114425185 - L1MA1 LINE L1 -1635 6086 1743 207 0 0 0 chr9 27846259 27846282 -114425162 + (TC)n Simple_repeat Simple_repeat 2 24 0 19893 168 25 22 chr9 27846282 27848015 -114423429 - L1MA1 LINE L1 -5978 1743 16 460 330 53 47 chr9 27848071 27848392 -114423052 - L1ME LINE L1 -346 5775 5453 511 246 99 0 chr9 27849194 27849336 -114422108 + MER69A DNA AcHobo 16 171 -6 308 330 28 0 chr9 27849614 27849723 -114421721 - MIR3 SINE MIR -10 198 87 336 313 144 6 chr9 27850397 27850557 -114420887 + MIR SINE MIR 10 191 -71 507 335 69 0 chr9 27851641 27851829 -114419615 + MIR SINE MIR 29 229 -33 6858 194 30 15 chr9 27853065 27853194 -114418250 + L1M2 LINE L1 2512 2638 -4210 1534 153 80 52 chr9 27853194 27853559 -114417885 - THE1C LTR MaLR 0 375 1 6858 194 30 15 chr9 27853559 27855381 -114416063 + L1M2 LINE L1 2638 4494 -2354 3579 152 63 0 chr9 27855381 27855955 -114415489 - LTR9 LTR ERV1 0 612 3 6154 182 58 18 chr9 27855958 27857207 -114414237 - HUERS-P3b LTR ERV1 -7 7411 6112 3863 83 7 11 chr9 27857213 27857752 -114413692 - HUERS-P3b LTR ERV1 -3809 3609 3073 1922 220 74 2 chr9 27857752 27858170 -114413274 + LTR8 LTR ERV1 1 448 -243 13909 167 31 30 chr9 27858170 27859602 -114411842 - HUERS-P3b LTR ERV1 -4783 2635 1197 333 0 0 0 chr9 27859602 27859639 -114411805 + (CA)n Simple_repeat Simple_repeat 1 37 0 13909 167 31 30 chr9 27859639 27860822 -114410622 - HUERS-P3b LTR ERV1 -6221 1197 17 3592 162 46 2 chr9 27860839 27861425 -114410019 - LTR9 LTR ERV1 0 612 1 2924 198 13 5 chr9 27861425 27862058 -114409386 + L1M2 LINE L1 4491 5128 -1720 2384 40 40 17 chr9 27862063 27862361 -114409083 - AluY SINE Alu -6 305 1 348 83 0 0 chr9 27862572 27862620 -114408824 + (TG)n Simple_repeat Simple_repeat 1 48 0 233 336 51 7 chr9 27863047 27863184 -114408260 - MIR SINE MIR 0 262 120 216 354 0 0 chr9 27863452 27863517 -114407927 - MIR SINE MIR -3 259 195 264 217 28 104 chr9 27863524 27863630 -114407814 - MLT1H LTR MaLR 0 549 452 275 320 10 10 chr9 27863763 27863860 -114407584 - MLT1H LTR MaLR -307 242 146 1200 169 165 4 chr9 27864117 27864359 -114407085 - AluJo SINE Alu -15 297 17 23 97 0 0 chr9 27864677 27864749 -114406695 + AT_rich Low_complexity Low_complexity 1 72 0 201 363 0 0 chr9 27866039 27866130 -114405314 + (TA)n Simple_repeat Simple_repeat 1 91 0 1499 179 39 4 chr9 27866130 27866409 -114405035 + MLT1A1 LTR MaLR 77 365 0 21 57 0 0 chr9 27866413 27866448 -114404996 + AT_rich Low_complexity Low_complexity 1 35 0 1010 215 96 0 chr9 27866678 27866971 -114404473 - MER33 DNA MER1_type -3 321 1 1648 241 145 73 chr9 27867462 27868411 -114403033 + LTR28 LTR ERV1 3 1020 0 1503 194 10 26 chr9 27868506 27868815 -114402629 - MER67D LTR ERV1 -210 304 1 277 254 218 9 chr9 27869150 27869260 -114402184 + MER5A DNA MER1_type 54 186 -3 2404 204 32 2 chr9 27870245 27870744 -114400700 + MER67D LTR ERV1 1 514 0 483 18 0 0 chr9 27870762 27870818 -114400626 + (TG)n Simple_repeat Simple_repeat 2 57 0 368 259 48 54 chr9 27871561 27871727 -114399717 + MIR SINE MIR 91 255 -7 246 179 0 0 chr9 27871745 27871801 -114399643 + CT-rich Low_complexity Low_complexity 3 58 0 273 250 25 0 chr9 27872655 27872735 -114398709 - MER53 DNA DNA -1 188 107 265 247 26 0 chr9 27872666 27872743 -114398701 + MER53 DNA DNA 23 101 -88 * 2835 13 0 0 chr9 27873440 27873753 -114397691 - AluYb8 SINE Alu -5 313 1 291 301 77 52 chr9 27874006 27874835 -114396609 - L1MEd LINE L1 -4699 1611 717 2064 153 0 0 chr9 27875343 27875644 -114395800 - AluSx SINE Alu -9 303 3 2126 130 0 7 chr9 27876546 27876845 -114394599 - AluSc SINE Alu -12 297 1 36336 95 6 16 chr9 27878234 27884438 -114387006 + L1PA6 LINE L1 11 6153 -1 2180 131 73 14 chr9 27885021 27885365 -114386079 - THE1B LTR MaLR 0 364 1 11135 110 10 1 chr9 27885366 27886931 -114384513 - THE1B-int LTR MaLR -1 1579 1 1922 143 88 26 chr9 27886931 27887274 -114384170 - THE1B LTR MaLR 0 364 1 1174 175 0 0 chr9 27887927 27888127 -114383317 + L1PBa LINE L1 3 202 -6661 * 9669 129 75 14 chr9 27888124 27890326 -114381118 + L1PBa LINE L1 639 3129 -3733 624 254 31 16 chr9 27890573 27890766 -114380678 + LTR7 LTR ERV1 238 433 -17 6129 260 27 29 chr9 27891250 27895277 -114376167 + HERVH LTR ERV1 596 7713 0 476 267 84 100 chr9 27895285 27895735 -114375709 + LTR7 LTR ERV1 8 450 0 4515 165 8 19 chr9 27895754 27897196 -114374248 + L1PB1 LINE L1 4333 5759 -392 198 0 0 0 chr9 27897196 27897218 -114374226 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 4515 165 8 19 chr9 27897218 27897332 -114374112 + L1PB1 LINE L1 5759 5873 -278 2826 98 11 3 chr9 27897337 27898232 -114373212 - L1PA8 LINE L1 -2 6170 5126 1957 87 35 7 chr9 27898232 27898515 -114372929 + L1PB1 LINE L1 5857 6151 0 1283 208 65 6 chr9 27899259 27899581 -114371863 - MER58B DNA MER1_type 0 341 1 2385 120 14 19 chr9 27900852 27901218 -114370226 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr9 27901845 27901873 -114369571 + AT_rich Low_complexity Low_complexity 1 28 0 212 293 71 57 chr9 27902673 27902813 -114368631 + L2 LINE L2 2936 3077 -195 2637 136 44 2 chr9 27903337 27903748 -114367696 + MSTC LTR MaLR 1 428 0 202 280 20 0 chr9 27904647 27904697 -114366747 + L2 LINE L2 3217 3267 -5 28 61 0 0 chr9 27905245 27905294 -114366150 + AT_rich Low_complexity Low_complexity 1 49 0 245 215 15 0 chr9 27905514 27905579 -114365865 + (TA)n Simple_repeat Simple_repeat 2 67 0 243 0 0 0 chr9 27905833 27905860 -114365584 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 235 226 16 16 chr9 27905866 27905928 -114365516 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 23 68 0 0 chr9 27905986 27906030 -114365414 + AT_rich Low_complexity Low_complexity 1 44 0 3789 199 57 13 chr9 27906042 27907058 -114364386 - L1MB5 LINE L1 -9 6165 5103 810 217 17 0 chr9 27907051 27907231 -114364213 - L1MB5 LINE L1 -1543 4603 4421 * 23 33 0 0 chr9 27907735 27907765 -114363679 + AT_rich Low_complexity Low_complexity 1 30 0 685 309 175 14 chr9 27908396 27908966 -114362478 + L2 LINE L2 2641 3313 0 255 269 15 0 chr9 27910728 27910795 -114360649 + MIR3 SINE MIR 97 164 -44 2161 125 76 15 chr9 27912286 27912629 -114358815 - THE1B LTR MaLR 0 364 1 10977 109 19 2 chr9 27912639 27914182 -114357262 - THE1B-int LTR MaLR -11 1569 1 2122 113 69 17 chr9 27914182 27914528 -114356916 - THE1B LTR MaLR 0 364 1 182 356 76 30 chr9 27915234 27915366 -114356078 - MIR SINE MIR -76 186 49 372 94 0 0 chr9 27915618 27915671 -114355773 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr9 27917047 27917069 -114354375 + AT_rich Low_complexity Low_complexity 1 22 0 193 333 0 0 chr9 27917737 27917800 -114353644 - L2 LINE L2 -4 3268 3206 263 200 0 0 chr9 27918009 27918059 -114353385 - L1MC4a LINE L1 -6 7802 7753 474 138 23 92 chr9 27918059 27918189 -114353255 + L1MB8 LINE L1 5921 6041 -137 * 6698 61 9 0 chr9 27918178 27919048 -114352396 - L1PA7 LINE L1 0 6154 5277 231 61 0 0 chr9 27919133 27919166 -114352278 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr9 27919914 27919935 -114351509 + AT_rich Low_complexity Low_complexity 1 21 0 726 186 0 0 chr9 27920631 27920792 -114350652 + FLAM_C SINE Alu 6 166 0 265 264 142 0 chr9 27922045 27922151 -114349293 - MER67D LTR ERV1 -5 509 389 1502 185 16 83 chr9 27922163 27922564 -114348880 - MER67C LTR ERV1 -242 272 1 333 0 0 0 chr9 27923093 27923130 -114348314 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 95 0 0 chr9 27923357 27923420 -114348024 + AT_rich Low_complexity Low_complexity 1 63 0 23 54 0 0 chr9 27926450 27926487 -114344957 + AT_rich Low_complexity Low_complexity 1 37 0 1623 196 2 86 chr9 27927209 27927410 -114344034 - MLT1A2 LTR MaLR 0 374 158 384 22 0 0 chr9 27927410 27927455 -114343989 + (TG)n Simple_repeat Simple_repeat 1 45 0 2914 159 36 26 chr9 27927462 27928047 -114343397 - LTR49 LTR ERV1 -2 593 3 1623 196 2 86 chr9 27928047 27928245 -114343199 - MLT1A2 LTR MaLR -222 152 1 336 48 0 0 chr9 27930755 27930797 -114340647 + (CA)n Simple_repeat Simple_repeat 1 42 0 227 279 122 0 chr9 27930802 27930944 -114340500 + MIR SINE MIR 94 262 0 1157 174 94 0 chr9 27931344 27931579 -114339865 + L1MB1 LINE L1 5908 6164 -4 2533 174 2 17 chr9 27931889 27932309 -114339135 - MSTC LTR MaLR -12 416 3 299 293 27 34 chr9 27932328 27932475 -114338969 + MLT1J1 LTR MaLR 62 207 -239 24 0 0 0 chr9 27932767 27932791 -114338653 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 27933111 27933135 -114338309 + AT_rich Low_complexity Low_complexity 1 24 0 291 28 0 0 chr9 27933342 27933378 -114338066 + (CA)n Simple_repeat Simple_repeat 1 36 0 695 331 47 16 chr9 27933553 27933934 -114337510 + L1ME1 LINE L1 5407 5799 -2009 21 0 0 0 chr9 27934113 27934134 -114337310 + AT_rich Low_complexity Low_complexity 1 21 0 2937 209 37 6 chr9 27934168 27934870 -114336574 + L1MB7 LINE L1 5296 6019 -165 324 272 97 68 chr9 27935134 27935340 -114336104 + L1MC4a LINE L1 6382 6593 -1215 654 306 35 11 chr9 27935400 27935776 -114335668 + L1MEc LINE L1 1419 1803 -4593 328 321 44 15 chr9 27935871 27936008 -114335436 + L1MC5 LINE L1 6647 6787 -1174 2321 254 97 14 chr9 27936061 27937387 -114334057 + L1MEc LINE L1 1838 3236 -2979 466 271 36 14 chr9 27937388 27937614 -114333830 + L1ME1 LINE L1 5943 6184 0 431 271 34 38 chr9 27937680 27937916 -114333528 + L1MC5 LINE L1 7679 7913 -48 23 0 0 0 chr9 27938119 27938142 -114333302 + AT_rich Low_complexity Low_complexity 1 23 0 478 333 52 0 chr9 27938189 27938342 -114333102 + MIR SINE MIR 36 196 -66 24 0 0 0 chr9 27938509 27938533 -114332911 + AT_rich Low_complexity Low_complexity 1 24 0 26376 43 2 2 chr9 27940456 27944571 -114326873 + L1PA4 LINE L1 2040 6155 0 1049 219 157 14 chr9 27944708 27945059 -114326385 - LTR37A LTR ERV1 -12 414 14 1587 244 57 18 chr9 27945291 27945730 -114325714 - MLT1C LTR MaLR -6 461 6 539 343 6 0 chr9 27945977 27946143 -114325301 + MIR3 SINE MIR 33 199 -9 320 253 11 33 chr9 27948149 27948240 -114323204 - MIR SINE MIR -15 247 159 297 279 257 0 chr9 27949167 27949307 -114322137 + MIR SINE MIR 23 198 -64 238 248 86 38 chr9 27949359 27949464 -114321980 - MIR SINE MIR -6 256 147 * 257 292 56 11 chr9 27949418 27949507 -114321937 + MIR SINE MIR 156 248 -14 204 40 0 0 chr9 27954101 27954126 -114317318 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 249 254 60 67 chr9 27955060 27955194 -114316250 - MIR SINE MIR 0 262 130 5620 124 5 28 chr9 27955329 27956222 -114315222 - MER4D LTR ERV1 0 872 1 200 329 35 0 chr9 27958575 27958660 -114312784 - MIR SINE MIR 0 262 175 188 325 48 24 chr9 27958750 27958833 -114312611 - MIR SINE MIR -131 131 47 191 307 57 23 chr9 27959741 27959829 -114311615 + MIR3 SINE MIR 76 166 -42 255 313 154 42 chr9 27960026 27960194 -114311250 + MLT1J LTR MaLR 224 422 -89 2073 230 87 69 chr9 27960194 27960921 -114310523 + LTR68 LTR ERV1 1 740 0 255 313 154 42 chr9 27960921 27960966 -114310478 + MLT1J LTR MaLR 422 461 -50 22 0 0 0 chr9 27961618 27961640 -114309804 + AT_rich Low_complexity Low_complexity 1 22 0 273 383 17 8 chr9 27962521 27962641 -114308803 + MIR3 SINE MIR 88 208 0 242 317 58 50 chr9 27962788 27962908 -114308536 + MIR SINE MIR 71 191 -71 22 80 0 0 chr9 27962994 27963044 -114308400 + AT_rich Low_complexity Low_complexity 1 50 0 220 310 0 62 chr9 27963291 27963404 -114308040 + L2 LINE L2 1583 1688 -1626 270 329 66 48 chr9 27963435 27963602 -114307842 - MLT1K LTR MaLR -290 298 129 603 40 0 0 chr9 27964463 27964537 -114306907 + (TTTTA)n Simple_repeat Simple_repeat 2 75 0 212 331 141 21 chr9 27964594 27964736 -114306708 + MIR SINE MIR 34 192 -70 222 328 90 49 chr9 27965037 27965159 -114306285 - MIR SINE MIR -58 150 24 2098 196 34 12 chr9 27965218 27965631 -114305813 - MSTB LTR MaLR -4 422 1 1402 253 50 23 chr9 27966983 27967426 -114304018 - MLT1C LTR MaLR 0 467 13 24742 144 16 16 chr9 27967852 27970725 -114300719 - L1PA8A LINE L1 0 6446 3575 363 23 0 0 chr9 27970725 27970769 -114300675 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 24742 144 16 16 chr9 27970769 27974275 -114297169 - L1PA8A LINE L1 -2871 3575 3 683 286 15 10 chr9 27974917 27975120 -114296324 + MIR SINE MIR 59 262 0 235 218 0 36 chr9 27975288 27975343 -114296101 + L3b LINE CR1 1527 1579 -4 194 376 83 32 chr9 27975736 27975893 -114295551 + L2 LINE L2 3108 3272 0 22 35 0 0 chr9 27976032 27976061 -114295383 + AT_rich Low_complexity Low_complexity 1 29 0 364 313 61 23 chr9 27976252 27976383 -114295061 - L2 LINE L2 -3 3269 3134 1386 196 0 0 chr9 27976472 27976696 -114294748 + AluJb SINE Alu 16 239 -73 264 297 244 17 chr9 27977106 27977466 -114293978 - L2 LINE L2 -619 2695 2254 243 0 0 0 chr9 27977482 27977509 -114293935 + (CA)n Simple_repeat Simple_repeat 2 28 0 254 155 0 56 chr9 27977580 27977651 -114293793 + (TG)n Simple_repeat Simple_repeat 2 68 0 239 218 26 39 chr9 27977681 27977759 -114293685 + L1MCa LINE L1 1992 2068 -4358 568 220 7 7 chr9 27977760 27977910 -114293534 + (TA)n Simple_repeat Simple_repeat 2 151 0 259 281 11 0 chr9 27977910 27977999 -114293445 + L1MC4 LINE L1 6614 6703 -1339 226 322 26 53 chr9 27978137 27978255 -114293189 - L2 LINE L2 -1230 2084 1969 2190 118 0 0 chr9 27978255 27978552 -114292892 - AluSc SINE Alu -12 297 1 226 322 26 53 chr9 27978552 27978585 -114292859 - L2 LINE L2 -1345 1969 1937 2918 173 93 2 chr9 27978585 27979124 -114292320 - LTR69 LTR ERVL 0 588 1 205 280 0 0 chr9 27979624 27979674 -114291770 - MIR SINE MIR -15 247 198 499 342 21 60 chr9 27979679 27980012 -114291432 - L2 LINE L2 -1837 1477 1158 374 360 37 37 chr9 27980180 27980608 -114290836 + L1ME LINE L1 166 593 -5612 666 317 62 17 chr9 27980794 27981390 -114290054 + L1ME LINE L1 1007 1629 -4767 23 54 0 0 chr9 27981454 27981491 -114289953 + AT_rich Low_complexity Low_complexity 1 37 0 980 236 50 8 chr9 27981491 27981749 -114289695 + L1ME3 LINE L1 5890 6158 -4 260 302 89 68 chr9 27981871 27982106 -114289338 + L3 LINE CR1 1085 1324 -253 266 275 43 0 chr9 27982142 27982211 -114289233 + L3 LINE CR1 1430 1501 -76 1493 176 60 33 chr9 27982268 27982570 -114288874 + AluJb SINE Alu 1 310 -2 308 312 0 0 chr9 27985359 27985436 -114286008 + L2 LINE L2 2943 3019 -253 362 299 54 12 chr9 27985570 27985737 -114285707 + MIR SINE MIR 84 257 -5 21 71 0 0 chr9 27985749 27985791 -114285653 + AT_rich Low_complexity Low_complexity 1 42 0 1921 180 83 11 chr9 27987108 27987542 -114283902 + MLT1C LTR MaLR 3 467 0 405 296 76 38 chr9 27987801 27988169 -114283275 - HAL1b LINE L1 -708 640 259 206 241 0 19 chr9 27988174 27988228 -114283216 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 383 282 6 31 chr9 27988442 27988605 -114282839 - L1M4 LINE L1 -1421 4725 4567 1385 143 41 121 chr9 27988611 27988974 -114282470 + THE1C LTR MaLR 1 334 -41 2202 264 62 18 chr9 27988978 27989915 -114281529 - L1M4 LINE L1 -1622 4524 3547 364 285 71 19 chr9 27989955 27990278 -114281166 - L1MEc LINE L1 -5142 1254 915 1455 199 31 3 chr9 27990279 27990565 -114280879 + AluJb SINE Alu 1 294 -18 28 0 0 0 chr9 27990565 27990593 -114280851 + AT_rich Low_complexity Low_complexity 1 28 0 549 345 26 40 chr9 27991183 27991534 -114279910 - L1MEc LINE L1 -6021 375 30 219 341 11 0 chr9 27992756 27992844 -114278600 + L2 LINE L2 2763 2851 -463 279 326 61 10 chr9 27994136 27994234 -114277210 + L2 LINE L2 3170 3272 0 202 375 11 0 chr9 27994303 27994391 -114277053 - MIR SINE MIR -82 180 92 673 290 88 30 chr9 27994522 27995035 -114276409 - LTR50 LTR ERVL 0 795 32 308 312 0 0 chr9 27995772 27995849 -114275595 + L2 LINE L2 2943 3019 -253 355 299 54 12 chr9 27995983 27996150 -114275294 + MIR SINE MIR 84 257 -5 21 71 0 0 chr9 27996162 27996204 -114275240 + AT_rich Low_complexity Low_complexity 1 42 0 1518 203 87 19 chr9 27997518 27997942 -114273502 + MLT1C LTR MaLR 3 455 -12 189 0 0 0 chr9 27998675 27998696 -114272748 + (T)n Simple_repeat Simple_repeat 1 21 0 28 0 0 0 chr9 28000215 28000243 -114271201 + AT_rich Low_complexity Low_complexity 1 28 0 220 146 24 0 chr9 28000681 28000722 -114270722 + (TA)n Simple_repeat Simple_repeat 2 43 0 226 304 0 0 chr9 28001371 28001427 -114270017 - L2 LINE L2 -5 3267 3212 248 167 0 56 chr9 28001642 28001696 -114269748 - MLT1F LTR MaLR -415 127 77 315 53 0 0 chr9 28001737 28001775 -114269669 + MLT2A2 LTR ERVL 416 453 0 2168 118 23 0 chr9 28001791 28002097 -114269347 - MLT2A2 LTR ERVL -140 313 1 5203 79 39 0 chr9 28002097 28002809 -114268635 - HERVL-A2 LTR ERVL 0 5654 4915 709 74 11 0 chr9 28002909 28003004 -114268440 + HERVL-A2 LTR ERVL 143 238 -5416 288 0 0 0 chr9 28003006 28003038 -114268406 + (GA)n Simple_repeat Simple_repeat 2 33 0 2841 103 16 0 chr9 28003038 28003418 -114268026 - MLT2A2 LTR ERVL -60 393 8 518 336 137 24 chr9 28004006 28004686 -114266758 + L2 LINE L2 2542 3312 -1 565 184 16 0 chr9 28004754 28004879 -114266565 - L1MA7 LINE L1 0 6291 6165 659 311 104 17 chr9 28005402 28005701 -114265743 - LTR50 LTR ERVL 0 795 471 445 235 62 49 chr9 28005774 28005936 -114265508 - LTR50 LTR ERVL -629 166 3 266 348 51 0 chr9 28006068 28006206 -114265238 - L2 LINE L2 -4 3309 3165 222 215 91 29 chr9 28006907 28006990 -114264454 - MIR SINE MIR -15 193 97 280 293 35 100 chr9 28008513 28008539 -114262905 + L2 LINE L2 3023 3049 -264 2458 57 3 0 chr9 28008539 28008840 -114262604 + AluY SINE Alu 1 302 -9 280 293 35 100 chr9 28008840 28009042 -114262402 + L2 LINE L2 3049 3236 -77 1862 298 151 26 chr9 28009044 28010028 -114261416 - L2 LINE L2 -7 3306 2200 699 262 18 29 chr9 28010363 28010638 -114260806 + AluSc SINE Alu 6 277 -32 416 363 6 18 chr9 28010725 28010893 -114260551 - MLT1H1 LTR MaLR -357 198 33 240 170 0 0 chr9 28011150 28011203 -114260241 + GA-rich Low_complexity Low_complexity 1 53 0 647 305 120 7 chr9 28011819 28012111 -114259333 + MLT1I LTR MaLR 63 387 -22 343 253 32 97 chr9 28012323 28012457 -114258987 + MIR SINE MIR 70 194 -68 800 222 37 23 chr9 28012457 28012673 -114258771 + MER20 DNA MER1_type 1 219 0 343 253 32 97 chr9 28012673 28012692 -114258752 + MIR SINE MIR 194 213 -49 22 0 0 0 chr9 28013059 28013081 -114258363 + AT_rich Low_complexity Low_complexity 1 22 0 2023 146 0 13 chr9 28013519 28013835 -114257609 + AluSx SINE Alu 1 312 0 259 301 80 32 chr9 28015576 28015858 -114255586 + L1ME LINE L1 5509 5818 -303 270 256 11 111 chr9 28016254 28016344 -114255100 + L2 LINE L2 3136 3216 -56 219 281 115 10 chr9 28016909 28017005 -114254439 - MIR3 SINE MIR -1 207 102 2009 66 0 4 chr9 28017355 28017611 -114253833 + AluY SINE Alu 4 258 -53 207 0 0 0 chr9 28017612 28017635 -114253809 + (A)n Simple_repeat Simple_repeat 1 23 0 25444 90 10 6 chr9 28018107 28021535 -114249909 - HERVL LTR ERVL -2034 3620 181 2438 81 0 3 chr9 28022314 28022621 -114248823 + AluY SINE Alu 2 307 -4 280 274 0 24 chr9 28022985 28023069 -114248375 - MIR3 SINE MIR -42 166 85 1965 184 124 50 chr9 28023383 28024018 -114247426 + LTR1B LTR ERV1 1 720 -106 691 276 21 16 chr9 28024134 28024326 -114247118 + MLT1I LTR MaLR 210 402 -7 26 0 0 0 chr9 28025210 28025236 -114246208 + AT_rich Low_complexity Low_complexity 1 26 0 185 154 26 0 chr9 28027248 28027287 -114244157 + (TA)n Simple_repeat Simple_repeat 1 40 0 569 301 74 6 chr9 28027652 28027815 -114243629 + MER5B DNA MER1_type 1 174 -4 761 195 0 0 chr9 28027996 28028124 -114243320 + MER7A DNA MER2_type 1 126 -220 853 203 46 13 chr9 28028135 28028372 -114243072 + MER33 DNA MER1_type 52 296 -28 327 320 98 34 chr9 28028734 28028968 -114242476 + MIR SINE MIR 2 250 -12 314 313 118 28 chr9 28029102 28029246 -114242198 + L2 LINE L2 3116 3272 0 193 316 83 23 chr9 28029878 28030011 -114241433 + L2 LINE L2 3172 3312 -1 342 266 13 0 chr9 28030482 28030561 -114240883 + Tigger3(Golem) DNA MER2_type 1 80 -2949 247 307 42 60 chr9 28030729 28030895 -114240549 + L2 LINE L2 2892 3054 -259 1016 202 23 18 chr9 28030982 28031200 -114240244 + MER20 DNA MER1_type 1 219 0 318 337 92 18 chr9 28031724 28031887 -114239557 - MIR3 SINE MIR 0 208 34 284 275 113 0 chr9 28032508 28032588 -114238856 + L2 LINE L2 3207 3295 -18 2014 118 3 7 chr9 28032604 28032925 -114238519 - AluSq SINE Alu 0 320 1 2080 157 18 0 chr9 28034197 28034534 -114236910 - MER61A LTR ERV1 0 343 1 1876 171 3 3 chr9 28035881 28036190 -114235254 + AluJo SINE Alu 2 310 -2 26 50 0 0 chr9 28036197 28036237 -114235207 + AT_rich Low_complexity Low_complexity 1 40 0 641 228 21 7 chr9 28038837 28038982 -114232462 + MER117 DNA MER1_type 4 150 -47 261 200 40 27 chr9 28039006 28039081 -114232363 + L2 LINE L2 2685 2760 -554 185 356 26 43 chr9 28039262 28039377 -114232067 + L2 LINE L2 2987 3099 -173 318 171 14 57 chr9 28040056 28040126 -114231318 + MER5A DNA MER1_type 10 76 -113 570 101 0 13 chr9 28040126 28040205 -114231239 + MER4E LTR ERV1 652 729 -37 187 274 236 19 chr9 28040241 28040347 -114231097 + MER5A DNA MER1_type 61 189 0 622 217 22 7 chr9 28040360 28040498 -114230946 - MER5B DNA MER1_type -30 148 9 219 285 223 31 chr9 28040511 28040641 -114230803 + MER5A DNA MER1_type 35 189 0 385 242 68 38 chr9 28040765 28040897 -114230547 + MLT1E3 LTR MaLR 69 204 -420 907 300 134 20 chr9 28040900 28041593 -114229851 + HAL1 LINE L1 1141 1912 -595 727 157 11 22 chr9 28041637 28041815 -114229629 + GA-rich Low_complexity Low_complexity 2 177 0 207 281 101 34 chr9 28043027 28043116 -114228328 - MIR3 SINE MIR -16 192 98 273 404 43 7 chr9 28044732 28044873 -114226571 + L2 LINE L2 3127 3272 0 2453 131 17 0 chr9 28045634 28045992 -114225452 + THE1B LTR MaLR 1 364 0 2452 167 24 5 chr9 28046153 28046573 -114224871 + MSTA LTR MaLR 1 428 0 275 355 43 16 chr9 28046749 28046935 -114224509 - MIR SINE MIR -52 210 20 26 30 0 0 chr9 28047380 28047413 -114224031 + AT_rich Low_complexity Low_complexity 1 33 0 182 208 83 21 chr9 28048489 28048537 -114222907 - L2 LINE L2 0 3272 3222 184 250 62 62 chr9 28048929 28048993 -114222451 + L3 LINE CR1 345 408 -1169 343 316 35 46 chr9 28049309 28049483 -114221961 - L2 LINE L2 -435 2879 2708 1256 129 0 0 chr9 28049484 28049654 -114221790 - AluSg/x SINE Alu -12 300 131 276 270 93 110 chr9 28049660 28049897 -114221547 - L2 LINE L2 -602 2712 2480 1563 203 7 7 chr9 28050071 28050357 -114221087 - AluJo SINE Alu -21 291 6 194 316 18 0 chr9 28050562 28050619 -114220825 - L2 LINE L2 -3 3269 3212 385 290 62 7 chr9 28051155 28051300 -114220144 - MIR SINE MIR -51 211 59 2467 75 0 3 chr9 28051615 28051923 -114219521 + AluY SINE Alu 1 307 -4 285 319 46 10 chr9 28052286 28052417 -114219027 - MIR3 SINE MIR -42 166 32 2374 179 176 45 chr9 28052684 28053348 -114218096 + LTR1B LTR ERV1 1 751 -75 217 283 17 0 chr9 28054605 28054665 -114216779 + MIR3 SINE MIR 125 185 -23 2293 98 7 0 chr9 28055674 28055980 -114215464 - AluY SINE Alu -3 308 1 1570 255 41 19 chr9 28056007 28056544 -114214900 - L1M4 LINE L1 -2154 3992 3444 375 344 49 101 chr9 28056795 28057223 -114214221 + L2 LINE L2 2866 3271 -1 366 114 0 0 chr9 28059404 28059474 -114211970 + (TA)n Simple_repeat Simple_repeat 1 70 0 441 103 0 0 chr9 28059575 28059643 -114211801 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 444 295 67 52 chr9 28061222 28061415 -114210029 + MIR SINE MIR 11 206 -56 1892 153 7 13 chr9 28061489 28061796 -114209648 - AluJo SINE Alu -5 307 3 417 282 164 9 chr9 28062502 28062722 -114208722 + MIR SINE MIR 9 262 0 180 0 0 0 chr9 28062824 28062844 -114208600 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 239 308 33 0 chr9 28063005 28063096 -114208348 - MIR3 SINE MIR -4 204 111 1185 87 0 0 chr9 28063113 28063263 -114208181 - AluSc SINE Alu -159 150 1 1966 138 0 3 chr9 28063266 28063589 -114207855 - AluSx SINE Alu 0 322 1 22 0 0 0 chr9 28064027 28064049 -114207395 + AT_rich Low_complexity Low_complexity 1 22 0 343 253 32 97 chr9 28064416 28064435 -114207009 - MIR SINE MIR -49 213 194 857 241 19 5 chr9 28064435 28064651 -114206793 - MER20 DNA MER1_type 0 219 1 343 253 32 97 chr9 28064651 28064785 -114206659 - MIR SINE MIR -68 194 70 652 312 129 6 chr9 28064997 28065314 -114206130 - MLT1I LTR MaLR -22 387 32 240 170 0 0 chr9 28065905 28065958 -114205486 + CT-rich Low_complexity Low_complexity 1 53 0 420 364 6 17 chr9 28066206 28066382 -114205062 + MLT1G3 LTR MaLR 25 198 -357 2297 92 7 3 chr9 28066441 28066745 -114204699 - AluSc SINE Alu -4 305 1 1433 255 14 31 chr9 28066746 28067162 -114204282 + MLT1C LTR MaLR 34 442 -25 539 289 108 16 chr9 28067220 28067543 -114203901 + MLT1G3 LTR MaLR 156 595 0 298 287 8 33 chr9 28067635 28067757 -114203687 + MLT1G3-int LTR MaLR 258 376 -995 231 243 81 0 chr9 28067849 28067923 -114203521 + MLT1C LTR MaLR 437 516 -39 313 307 11 0 chr9 28067972 28068060 -114203384 + MLT1H1 LTR MaLR 1 89 -466 213 65 0 0 chr9 28069084 28069115 -114202329 + (A)n Simple_repeat Simple_repeat 1 31 0 293 145 16 0 chr9 28069895 28069957 -114201487 + (CA)n Simple_repeat Simple_repeat 2 64 0 2096 136 0 16 chr9 28070543 28070860 -114200584 + AluJb SINE Alu 1 312 0 487 347 86 36 chr9 28070891 28071228 -114200216 + MLT1K LTR MaLR 3 356 -232 295 57 0 0 chr9 28071293 28071328 -114200116 + U2 snRNA snRNA 1 35 -153 295 351 76 0 chr9 28072090 28072221 -114199223 + MIR3 SINE MIR 65 205 -3 23 33 0 0 chr9 28072842 28072872 -114198572 + AT_rich Low_complexity Low_complexity 1 30 0 337 182 80 23 chr9 28073154 28073242 -114198202 - MIR SINE MIR -16 246 154 652 58 0 0 chr9 28073712 28073798 -114197646 - L1PA5 LINE L1 -1 6153 6068 2044 130 7 0 chr9 28074650 28074951 -114196493 + AluY SINE Alu 3 305 -6 457 238 57 33 chr9 28075131 28075253 -114196191 - MLT1I LTR MaLR -5 404 280 260 257 14 14 chr9 28075387 28075461 -114195983 - L2 LINE L2 -1 3312 3239 910 229 132 61 chr9 28075481 28075944 -114195500 - MER67C LTR ERV1 0 514 69 284 180 0 0 chr9 28076009 28076059 -114195385 - MER67D LTR ERV1 -453 61 12 298 178 41 0 chr9 28076078 28076151 -114195293 + L1MA9 LINE L1 6075 6150 -162 7100 238 112 17 chr9 28076165 28078440 -114193004 + L1M3e LINE L1 2 2509 -4528 2637 230 79 54 chr9 28078632 28079841 -114191603 + L1M1 LINE L1 2291 3597 -3968 342 93 19 0 chr9 28079841 28079895 -114191549 - MADE1 DNA Mariner -1 79 25 2637 230 79 54 chr9 28079895 28080286 -114191158 + L1M1 LINE L1 3597 3977 -3588 553 167 10 0 chr9 28080287 28080389 -114191055 + L1M1 LINE L1 4138 4240 -3325 1320 200 12 16 chr9 28080397 28080652 -114190792 - MLT1A1 LTR MaLR -111 254 1 1869 201 11 6 chr9 28080671 28081034 -114190410 + MLT1A1 LTR MaLR 1 365 0 571 276 65 14 chr9 28081059 28081273 -114190171 - L2 LINE L2 -1095 2219 1995 209 204 82 0 chr9 28081290 28081339 -114190105 - L2 LINE L2 -1890 1424 1372 2402 153 3 3 chr9 28081350 28081730 -114189714 + MLT1B LTR MaLR 1 380 -10 924 314 101 36 chr9 28081735 28082258 -114189186 - L2 LINE L2 -1959 1355 799 407 281 31 69 chr9 28082260 28082420 -114189024 - MER5A DNA MER1_type -5 184 31 320 317 175 6 chr9 28082462 28082645 -114188799 - L2 LINE L2 -2504 810 597 34 24 0 0 chr9 28082722 28082763 -114188681 + AT_rich Low_complexity Low_complexity 1 41 0 904 219 33 37 chr9 28082787 28083032 -114188412 + MLT1A1 LTR MaLR 1 271 -119 2015 125 6 56 chr9 28083035 28083372 -114188072 + MER1B DNA MER1_type 20 339 0 192 97 0 0 chr9 28083458 28083489 -114187955 + (CA)n Simple_repeat Simple_repeat 1 31 0 186 339 0 32 chr9 28083489 28083551 -114187893 - L3 LINE CR1 0 1577 1518 2013 165 55 80 chr9 28083575 28084089 -114187355 - L1MC1 LINE L1 -18 6315 5815 478 340 105 0 chr9 28084270 28084461 -114186983 - L3 LINE CR1 -65 1512 1302 311 335 20 66 chr9 28084737 28084934 -114186510 + L3b LINE CR1 1323 1510 -73 356 275 44 12 chr9 28085061 28085221 -114186223 + L1ME LINE L1 5630 5794 -327 33 56 0 0 chr9 28085435 28085489 -114185955 + AT_rich Low_complexity Low_complexity 1 54 0 504 304 119 28 chr9 28086017 28086405 -114185039 + L1ME2 LINE L1 676 1098 -5021 4361 195 31 12 chr9 28086406 28087512 -114183932 + L1MB3 LINE L1 4682 5824 -359 243 0 0 0 chr9 28087512 28087539 -114183905 + (CA)n Simple_repeat Simple_repeat 2 28 0 4361 195 31 12 chr9 28087539 28087906 -114183538 + L1MB3 LINE L1 5824 6183 0 481 284 54 50 chr9 28088961 28089278 -114182166 + L1ME2 LINE L1 2613 2930 -3199 301 316 53 35 chr9 28089343 28089514 -114181930 + L1ME2 LINE L1 4878 5051 -1078 263 288 70 35 chr9 28089718 28089975 -114181469 + L1ME2 LINE L1 5298 5563 -2228 342 270 87 24 chr9 28090008 28090251 -114181193 + L1ME2 LINE L1 5668 5929 -216 29 0 0 0 chr9 28090513 28090542 -114180902 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr9 28090661 28090702 -114180742 + AT_rich Low_complexity Low_complexity 1 41 0 205 333 17 0 chr9 28092790 28092850 -114178594 + L2 LINE L2 3244 3304 -9 322 347 28 21 chr9 28093087 28093231 -114178213 - MER5A DNA MER1_type -44 145 1 2946 69 0 0 chr9 28094656 28095031 -114176413 - L1PA7 LINE L1 -2 6152 5778 1864 169 27 11 chr9 28095389 28095999 -114175445 - MER67C LTR ERV1 0 710 1 419 291 126 13 chr9 28096661 28096812 -114174632 - MIR SINE MIR -74 188 21 208 200 31 0 chr9 28097779 28097844 -114173600 + (TA)n Simple_repeat Simple_repeat 1 67 0 229 356 53 0 chr9 28098680 28098812 -114172632 - MIR SINE MIR -13 249 111 342 219 0 24 chr9 28099017 28099099 -114172345 - LTR67 LTR ERVL -21 536 457 2170 126 0 0 chr9 28100996 28101298 -114170146 - AluSq SINE Alu -11 302 1 1512 146 8 8 chr9 28102128 28102368 -114169076 + AluSg SINE Alu 1 240 -70 180 0 0 0 chr9 28103261 28103281 -114168163 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr9 28103382 28103406 -114168038 + AT_rich Low_complexity Low_complexity 1 24 0 308 263 0 26 chr9 28103486 28103562 -114167882 - MER5A DNA MER1_type -3 186 113 274 288 0 30 chr9 28103514 28103580 -114167864 + MER5A DNA MER1_type 43 106 -83 * 191 146 24 0 chr9 28103761 28103802 -114167642 + CT-rich Low_complexity Low_complexity 1 42 0 393 289 82 31 chr9 28105088 28105301 -114166143 - MIR SINE MIR -32 230 3 200 360 101 0 chr9 28105727 28105816 -114165628 + MIR SINE MIR 8 105 -157 2240 90 0 35 chr9 28105843 28106153 -114165291 - AluY SINE Alu -10 301 3 680 214 26 7 chr9 28106853 28107007 -114164437 + FRAM SINE Alu 1 157 -19 225 0 0 0 chr9 28107777 28107802 -114163642 + (A)n Simple_repeat Simple_repeat 1 25 0 263 265 48 36 chr9 28107888 28107971 -114163473 + MIR SINE MIR 28 111 -151 222 37 0 0 chr9 28108241 28108268 -114163176 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2226 115 0 0 chr9 28108315 28108611 -114162833 + AluSx SINE Alu 1 296 -16 338 209 15 0 chr9 28108886 28108953 -114162491 + Tigger3(Golem) DNA MER2_type 2961 3028 -1 267 234 16 0 chr9 28109425 28109489 -114161955 + MIR SINE MIR 133 197 -65 550 296 59 0 chr9 28109678 28109847 -114161597 + MIR SINE MIR 37 215 -47 296 297 136 22 chr9 28110491 28110764 -114160680 + L1ME LINE L1 5536 5839 -282 270 256 11 111 chr9 28111138 28111228 -114160216 + L2 LINE L2 3136 3216 -56 2141 63 56 7 chr9 28112009 28112294 -114159150 + AluY SINE Alu 1 299 -12 29 28 0 0 chr9 28113182 28113218 -114158226 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr9 28113309 28113355 -114158089 + AT_rich Low_complexity Low_complexity 1 46 0 368 246 92 8 chr9 28113444 28113574 -114157870 + MER103 DNA DNA 2 142 -24 373 263 42 34 chr9 28113784 28113902 -114157542 + MLT1J LTR MaLR 1 119 -392 286 298 67 0 chr9 28114370 28114474 -114156970 + LTR67 LTR ERVL 433 543 -14 1821 211 103 29 chr9 28114547 28115031 -114156413 + MLT2B1 LTR ERVL 1 520 0 223 314 100 14 chr9 28116244 28116384 -114155060 + MIR SINE MIR 98 249 -13 482 353 120 15 chr9 28117197 28117605 -114153839 + L2 LINE L2 2426 2876 -438 2148 123 0 7 chr9 28117864 28118172 -114153272 + AluSg SINE Alu 1 306 -4 1241 138 0 0 chr9 28118513 28118702 -114152742 + AluSg/x SINE Alu 124 312 0 8203 50 8 227 chr9 28119295 28121068 -114150376 - SVA Other Other -2 1384 1 718 171 85 8 chr9 28121181 28121310 -114150134 - FRAM SINE Alu -22 154 16 925 190 65 0 chr9 28122838 28123022 -114148422 + MER3 DNA MER1_type 10 205 -4 1040 305 96 47 chr9 28123084 28123885 -114147559 - HAL1 LINE L1 -1496 1011 172 246 179 0 0 chr9 28124085 28124141 -114147303 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 2545 57 0 0 chr9 28124159 28124457 -114146987 - AluY SINE Alu -13 298 1 600 252 69 13 chr9 28125151 28125310 -114146134 - MIR3 SINE MIR -7 201 34 710 281 13 45 chr9 28125501 28125725 -114145719 + MIR SINE MIR 20 236 -26 332 312 89 13 chr9 28126516 28126673 -114144771 - MIR3 SINE MIR -10 198 30 389 318 218 0 chr9 28126729 28126899 -114144545 - L2 LINE L2 -2531 783 577 220 387 0 0 chr9 28129512 28129587 -114141857 - L2 LINE L2 -2 3270 3196 475 311 42 37 chr9 28129646 28129836 -114141608 + MIR3 SINE MIR 9 199 -9 350 332 80 25 chr9 28130126 28130325 -114141119 - MIR SINE MIR -49 213 4 24 32 0 0 chr9 28131537 28131568 -114139876 + AT_rich Low_complexity Low_complexity 1 31 0 215 306 32 0 chr9 28132137 28132199 -114139245 + L2 LINE L2 3209 3272 0 358 331 22 39 chr9 28133093 28133208 -114138236 + MIR SINE MIR 42 154 -108 919 275 60 68 chr9 28133208 28133662 -114137782 + MLT1J2 LTR MaLR 1 450 0 358 331 22 39 chr9 28133662 28133727 -114137717 + MIR SINE MIR 154 219 -43 2000 109 14 3 chr9 28133730 28134013 -114137431 + AluSp SINE Alu 5 290 -23 2164 114 0 7 chr9 28134025 28134324 -114137120 + AluSc SINE Alu 1 297 -12 324 342 45 19 chr9 28135225 28135380 -114136064 - MIR SINE MIR -11 251 93 227 167 48 24 chr9 28136031 28136115 -114135329 + (CACAC)n Simple_repeat Simple_repeat 1 86 0 618 233 62 28 chr9 28136253 28136429 -114135015 + LTR53 LTR ERVL 338 519 0 545 250 17 0 chr9 28138086 28138202 -114133242 + FLAM_A SINE Alu 1 118 -15 813 276 74 87 chr9 28138217 28138327 -114133117 - MLT1G LTR MaLR -52 538 428 726 238 119 10 chr9 28138327 28138520 -114132924 - MER58C DNA MER1_type -1 214 1 813 276 74 87 chr9 28138520 28138926 -114132518 - MLT1G LTR MaLR -162 428 1 21 0 0 0 chr9 28139705 28139726 -114131718 + AT_rich Low_complexity Low_complexity 1 21 0 274 260 13 39 chr9 28140179 28140256 -114131188 + MIR3 SINE MIR 125 199 -9 21 0 0 0 chr9 28140912 28140933 -114130511 + AT_rich Low_complexity Low_complexity 1 21 0 1901 152 33 0 chr9 28142024 28142326 -114129118 + AluSx SINE Alu 1 312 0 216 138 52 69 chr9 28142909 28142967 -114128477 + L2 LINE L2 3257 3313 0 597 308 68 13 chr9 28143171 28143405 -114128039 + MIR SINE MIR 3 249 -13 21 0 0 0 chr9 28143469 28143490 -114127954 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 28143565 28143597 -114127847 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr9 28144167 28144211 -114127233 + (T)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chr9 28145180 28145215 -114126229 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr9 28146602 28146644 -114124800 + AT_rich Low_complexity Low_complexity 1 42 0 211 306 97 0 chr9 28147603 28147727 -114123717 - MIR SINE MIR -58 204 69 2487 84 0 0 chr9 28148687 28148998 -114122446 - AluY SINE Alu 0 311 1 300 342 173 27 chr9 28149806 28150101 -114121343 - L2 LINE L2 0 3272 2935 42411 36 22 1 chr9 28150887 28156912 -114114532 + L1PA3 LINE L1 1 6154 -1 22 0 0 0 chr9 28157715 28157737 -114113707 + AT_rich Low_complexity Low_complexity 1 22 0 448 311 34 28 chr9 28158927 28159145 -114112299 - MIR SINE MIR -34 228 9 1807 169 0 10 chr9 28159684 28159980 -114111464 - AluJo SINE Alu -13 299 7 22 0 0 0 chr9 28160087 28160109 -114111335 + AT_rich Low_complexity Low_complexity 1 22 0 2045 133 3 0 chr9 28160241 28160543 -114110901 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 28160916 28160945 -114110499 + AT_rich Low_complexity Low_complexity 1 29 0 328 361 9 69 chr9 28161462 28161678 -114109766 + MIR SINE MIR 47 249 -13 3398 137 33 50 chr9 28162362 28162486 -114108958 - LTR26 LTR ERV1 0 603 478 3467 109 58 0 chr9 28162486 28163034 -114108410 - LTR19B LTR ERV1 0 580 1 3398 137 33 50 chr9 28163034 28163523 -114107921 - LTR26 LTR ERV1 -125 478 1 393 221 0 0 chr9 28164329 28164415 -114107029 - L1P LINE L1 -3420 2726 2641 384 283 6 17 chr9 28164422 28164595 -114106849 + L1P LINE L1 2747 2917 -3229 * 5217 132 23 9 chr9 28164586 28165442 -114106002 + L1PA15 LINE L1 5293 6160 -5 2187 253 47 0 chr9 28166332 28166870 -114104574 + MLT1F1 LTR MaLR 1 563 -4 2125 129 17 8 chr9 28167915 28168271 -114103173 + L1MA8 LINE L1 5931 6289 -2 31 26 0 0 chr9 28168271 28168309 -114103135 + AT_rich Low_complexity Low_complexity 1 38 0 225 194 32 16 chr9 28169069 28169131 -114102313 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chr9 28169383 28169404 -114102040 + AT_rich Low_complexity Low_complexity 1 21 0 2175 98 0 19 chr9 28170065 28170372 -114101072 - AluY SINE Alu -8 303 3 488 270 16 0 chr9 28171220 28171346 -114100098 - MIR SINE MIR -4 258 131 26 30 0 0 chr9 28171922 28171955 -114099489 + AT_rich Low_complexity Low_complexity 1 33 0 4212 158 16 11 chr9 28172484 28173192 -114098252 - MER50 LTR ERV1 -23 711 1 340 306 37 9 chr9 28173261 28173369 -114098075 + MIR SINE MIR 36 146 -62 336 336 17 8 chr9 28175762 28175881 -114095563 - MIR SINE MIR -123 139 20 2120 220 5 36 chr9 28176582 28176654 -114094790 - L1P LINE L1 -1070 5076 5003 1952 100 100 0 chr9 28176654 28176924 -114094520 - AluSq SINE Alu -12 301 5 2120 220 5 36 chr9 28176924 28177409 -114094035 - L1P LINE L1 -1143 5003 4536 354 64 0 0 chr9 28177616 28177663 -114093781 - MADE1 DNA Mariner -3 77 31 26 50 0 0 chr9 28178174 28178214 -114093230 + AT_rich Low_complexity Low_complexity 1 40 0 27278 114 10 46 chr9 28178217 28184666 -114086778 + L1PA7 LINE L1 5 6154 0 335 356 10 0 chr9 28184830 28184931 -114086513 + L2 LINE L2 3117 3218 -54 482 277 48 48 chr9 28185606 28185855 -114085589 + L1M4 LINE L1 14 262 -6280 5006 242 51 53 chr9 28185885 28188607 -114082837 - L1M4c LINE L1 -3437 3207 359 604 91 0 0 chr9 28188607 28188695 -114082749 + L1PA13 LINE L1 6073 6160 -3 5006 242 51 53 chr9 28188695 28189005 -114082439 - L1M4c LINE L1 -6285 359 50 5034 180 12 34 chr9 28189019 28191083 -114080361 - L1PA16 LINE L1 -9 6157 4125 194 0 0 37 chr9 28191175 28191202 -114080242 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 605 321 57 22 chr9 28191270 28191638 -114079806 + L1M4 LINE L1 485 865 -5677 1966 240 42 54 chr9 28191712 28192378 -114079066 + L1M4 LINE L1 879 1537 -5005 2054 125 7 7 chr9 28192378 28192675 -114078769 + AluSx SINE Alu 1 297 -15 1966 240 42 54 chr9 28192675 28192745 -114078699 + L1M4 LINE L1 1537 1606 -4936 242 387 76 0 chr9 28192748 28192867 -114078577 + MER5B DNA MER1_type 49 176 -2 242 315 120 28 chr9 28192878 28192986 -114078458 - MER5B DNA MER1_type -1 177 60 1672 128 4 51 chr9 28193014 28193287 -114078157 - AluSq SINE Alu -53 260 1 188 160 260 0 chr9 28193289 28193339 -114078105 - MER5B DNA MER1_type -115 63 1 221 349 12 12 chr9 28195582 28195665 -114075779 + L2 LINE L2 2957 3039 -233 185 370 9 19 chr9 28196145 28196253 -114075191 + L2 LINE L2 2904 3010 -262 192 125 0 0 chr9 28197779 28197811 -114073633 + (T)n Simple_repeat Simple_repeat 1 32 0 2252 123 0 0 chr9 28197820 28198130 -114073314 - AluSg SINE Alu 0 310 1 876 342 76 13 chr9 28198487 28199109 -114072335 + L2 LINE L2 2642 3313 0 195 189 27 0 chr9 28199264 28199301 -114072143 + L2 LINE L2 3213 3250 -22 237 317 10 29 chr9 28200668 28200772 -114070672 + MIR SINE MIR 13 114 -148 221 320 40 0 chr9 28200818 28200893 -114070551 + MIR SINE MIR 125 202 -60 225 0 0 0 chr9 28200942 28200967 -114070477 + (CA)n Simple_repeat Simple_repeat 2 26 0 199 147 173 53 chr9 28202065 28202140 -114069304 - L2 LINE L2 -4 3268 3185 544 300 141 14 chr9 28202364 28202584 -114068860 + MIR SINE MIR 15 262 0 979 208 84 44 chr9 28203029 28203391 -114068053 + LTR52 LTR ERVL 1 418 -3 355 289 25 16 chr9 28203707 28203828 -114067616 - MER94 DNA DNA -3 131 10 302 337 105 16 chr9 28204139 28204329 -114067115 + MIR SINE MIR 53 259 -3 341 276 16 8 chr9 28204450 28204573 -114066871 + L1ME LINE L1 5536 5659 -462 184 360 92 7 chr9 28204668 28204821 -114066623 + MIR SINE MIR 97 262 0 2152 119 0 3 chr9 28205001 28205304 -114066140 - AluSx SINE Alu -10 302 1 195 252 63 158 chr9 28206945 28207072 -114064372 - MIR3 SINE MIR -1 207 93 2412 92 0 0 chr9 28207112 28207418 -114064026 - AluSg SINE Alu -4 306 1 300 91 0 0 chr9 28207836 28207880 -114063564 + (CA)n Simple_repeat Simple_repeat 2 45 0 225 338 100 12 chr9 28209445 28209525 -114061919 + L2 LINE L2 3148 3234 -38 321 302 42 0 chr9 28209748 28209844 -114061600 + MIR SINE MIR 89 188 -74 445 192 13 0 chr9 28212097 28212175 -114059269 - Tigger7 DNA MER2_type -2405 82 4 252 209 90 0 chr9 28212194 28212261 -114059183 - Zaphod DNA AcHobo -3304 727 655 1035 167 39 0 chr9 28212310 28212490 -114058954 + MER3 DNA MER1_type 10 196 -13 1606 275 22 0 chr9 28212504 28212904 -114058540 - Zaphod DNA AcHobo -3461 570 162 318 87 0 0 chr9 28212950 28212996 -114058448 + (TG)n Simple_repeat Simple_repeat 1 46 0 369 319 85 0 chr9 28214208 28214349 -114057095 + L2 LINE L2 3128 3280 -33 773 280 16 11 chr9 28214392 28214581 -114056863 - MIR SINE MIR -65 197 8 2566 227 27 22 chr9 28214825 28215379 -114056065 + MER68 LTR ERV1 6 562 0 427 318 35 17 chr9 28215570 28215743 -114055701 + MIR SINE MIR 85 260 -2 214 200 22 0 chr9 28216595 28216640 -114054804 + GA-rich Low_complexity Low_complexity 3 48 0 347 344 62 16 chr9 28216955 28217126 -114054318 - MIR SINE MIR -61 147 14 204 423 0 21 chr9 28217944 28218041 -114053403 - MIR SINE MIR -145 117 23 294 305 136 26 chr9 28218402 28218556 -114052888 - L2 LINE L2 -1 3271 3101 337 327 142 58 chr9 28219201 28219547 -114051897 + HAL1 LINE L1 1 375 -2132 1020 300 105 15 chr9 28219550 28220845 -114050599 + HAL1 LINE L1 581 2045 -462 1691 174 16 19 chr9 28221049 28221360 -114050084 - AluSx SINE Alu -2 310 1 25 51 0 0 chr9 28223860 28223899 -114047545 + AT_rich Low_complexity Low_complexity 1 39 0 2805 19 0 6 chr9 28224233 28224553 -114046891 - AluYb8 SINE Alu 0 318 1 460 368 63 9 chr9 28227001 28227224 -114044220 + MIR SINE MIR 22 256 -6 183 333 67 0 chr9 28231976 28232036 -114039408 + L2 LINE L2 3210 3273 -40 302 370 0 7 chr9 28232461 28232596 -114038848 - L2 LINE L2 -444 2870 2737 363 260 29 10 chr9 28232705 28232809 -114038635 + MER94 DNA DNA 24 129 -5 349 219 0 122 chr9 28233461 28233625 -114037819 + L1ME4a LINE L1 5843 5986 -135 549 275 150 0 chr9 28233729 28233889 -114037555 - MER5A DNA MER1_type -2 187 4 628 252 56 0 chr9 28233916 28234059 -114037385 - MER5B DNA MER1_type -16 162 12 25 31 0 0 chr9 28234077 28234109 -114037335 + AT_rich Low_complexity Low_complexity 1 32 0 516 113 21 54 chr9 28234114 28234300 -114037144 + (TA)n Simple_repeat Simple_repeat 1 180 0 1708 152 37 10 chr9 28234417 28234713 -114036731 + MER57A LTR ERV1 100 403 0 274 306 56 9 chr9 28234748 28234856 -114036588 + MIR SINE MIR 100 212 -50 2530 65 0 0 chr9 28235646 28235956 -114035488 + AluY SINE Alu 1 310 -1 935 207 163 82 chr9 28236303 28236721 -114034723 - MER66A LTR ERV1 -3 475 97 191 317 50 50 chr9 28236906 28237007 -114034437 + MIR SINE MIR 113 213 -49 261 201 122 79 chr9 28237114 28237253 -114034191 - MLT1L LTR MaLR 0 615 471 1739 242 95 9 chr9 28237333 28237994 -114033450 + L1ME2 LINE L1 3723 4440 -1706 1131 227 0 49 chr9 28237988 28238219 -114033225 + L1ME2 LINE L1 5639 5855 -309 * 2019 121 10 36 chr9 28238219 28238524 -114032920 - AluSq SINE Alu -14 299 3 1131 227 0 49 chr9 28238524 28238578 -114032866 + L1ME2 LINE L1 5855 5910 -254 255 119 0 0 chr9 28238652 28238694 -114032750 + MER3 DNA MER1_type 8 49 -160 22 35 0 0 chr9 28239407 28239436 -114032008 + AT_rich Low_complexity Low_complexity 1 29 0 282 256 6 122 chr9 28241916 28242096 -114029348 - MLT1I LTR MaLR -22 387 229 25 31 0 0 chr9 28242403 28242435 -114029009 + AT_rich Low_complexity Low_complexity 1 32 0 4987 170 30 41 chr9 28242444 28244597 -114026847 - L1MA9 LINE L1 0 7731 5594 14526 192 25 19 chr9 28244609 28248516 -114022928 - L1PB1 LINE L1 -8 6859 2754 5231 58 37 11 chr9 28248516 28249220 -114022224 - LTR30 LTR ERV1 0 722 1 14526 192 25 19 chr9 28249220 28251116 -114020328 - L1PB1 LINE L1 -4113 2754 872 1078 275 65 50 chr9 28251121 28251656 -114019788 + L1PBa LINE L1 9 551 -6312 6637 230 75 33 chr9 28251759 28254712 -114016732 - L1MA9 LINE L1 -1964 5601 2533 565 184 37 9 chr9 28254720 28254829 -114016615 + MER46A DNA MER2_type 1 112 -124 4551 133 43 19 chr9 28255174 28256002 -114015442 - Tigger3(Golem) DNA MER2_type -1 3028 2181 1576 232 46 81 chr9 28255986 28256541 -114014903 + MLT1F1 LTR MaLR 33 567 0 * 2141 111 3 10 chr9 28256716 28257013 -114014431 + AluSq SINE Alu 1 295 -18 2268 107 0 0 chr9 28257069 28257367 -114014077 + AluSc SINE Alu 2 299 -10 325 155 63 0 chr9 28257367 28257575 -114013869 + (TA)n Simple_repeat Simple_repeat 1 221 0 188 352 127 0 chr9 28258785 28258927 -114012517 + MIR SINE MIR 103 262 0 2878 157 72 9 chr9 28259005 28259573 -114011871 + L1MB1 LINE L1 5565 6168 0 24 0 0 0 chr9 28259577 28259601 -114011843 + AT_rich Low_complexity Low_complexity 1 24 0 463 317 113 14 chr9 28259964 28260185 -114011259 - MIR SINE MIR -12 250 8 513 273 89 74 chr9 28260223 28260670 -114010774 - LTR16A1 LTR ERVL 0 457 4 248 141 0 56 chr9 28262541 28262612 -114008832 + L1MC4 LINE L1 6637 6703 -1339 216 325 0 12 chr9 28263305 28263385 -114008059 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 234 0 0 0 chr9 28263385 28263411 -114008033 + (TG)n Simple_repeat Simple_repeat 1 26 0 537 253 81 0 chr9 28264181 28264355 -114007089 + MER5A DNA MER1_type 2 189 0 213 368 94 9 chr9 28264438 28264544 -114006900 - MIR3 SINE MIR -7 201 87 299 313 42 0 chr9 28265191 28265287 -114006157 - MIR SINE MIR -74 188 89 220 319 129 36 chr9 28266222 28266470 -114004974 + L2 LINE L2 2826 3096 -176 227 366 168 0 chr9 28267917 28268018 -114003426 - L2 LINE L2 -16 3256 3139 777 204 25 181 chr9 28268077 28268518 -114002926 + MLT1A2 LTR MaLR 1 372 -2 217 398 73 8 chr9 28269543 28269666 -114001778 - L2 LINE L2 -21 3251 3121 373 266 95 38 chr9 28269866 28270024 -114001420 - MIR SINE MIR -52 210 44 262 303 172 5 chr9 28270043 28270241 -114001203 - MIR SINE MIR -1 261 31 30 27 0 0 chr9 28271495 28271532 -113999912 + AT_rich Low_complexity Low_complexity 1 37 0 430 240 0 0 chr9 28272186 28272261 -113999183 + L2 LINE L2 3198 3272 0 2433 82 0 0 chr9 28272926 28273231 -113998213 + AluSg SINE Alu 1 305 -5 264 288 14 0 chr9 28273995 28274068 -113997376 - L2 LINE L2 -47 3266 3193 1200 273 86 67 chr9 28274095 28275071 -113996373 - L1ME LINE L1 -4981 1089 95 207 0 0 0 chr9 28275799 28275822 -113995622 + (CA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr9 28276255 28276284 -113995160 + AT_rich Low_complexity Low_complexity 1 29 0 1206 232 134 46 chr9 28276451 28276485 -113994959 - MLT2B1 LTR ERVL 0 520 490 180 0 0 0 chr9 28276485 28276505 -113994939 + (GA)n Simple_repeat Simple_repeat 1 20 0 252 0 0 0 chr9 28276507 28276535 -113994909 + (TG)n Simple_repeat Simple_repeat 2 29 0 1206 232 134 46 chr9 28276535 28276975 -113994469 - MLT2B1 LTR ERVL -30 490 1 330 327 0 9 chr9 28277448 28277555 -113993889 + MIR SINE MIR 41 146 -116 183 331 8 85 chr9 28277635 28277765 -113993679 - L2 LINE L2 -12 3260 3141 253 263 38 0 chr9 28277835 28277915 -113993529 + L1M4 LINE L1 5150 5232 -914 335 286 60 38 chr9 28278110 28278295 -113993149 + L1M4 LINE L1 2120 2308 -3838 844 288 58 56 chr9 28278359 28278450 -113992994 - L2 LINE L2 0 3313 3224 1228 206 121 0 chr9 28278450 28278722 -113992722 + AluJo SINE Alu 4 308 -4 844 288 58 56 chr9 28278722 28279043 -113992401 - L2 LINE L2 -89 3224 2900 624 301 83 0 chr9 28279032 28279248 -113992196 - L2 LINE L2 -563 2751 2518 * 2200 108 0 3 chr9 28279248 28279580 -113991864 + AluSq SINE Alu 1 331 0 1605 151 63 0 chr9 28279589 28279874 -113991570 + L1MA9 LINE L1 5971 6273 -39 307 232 71 18 chr9 28279894 28280006 -113991438 + Charlie7 DNA MER1_type 563 680 -1932 24 53 0 0 chr9 28280006 28280044 -113991400 + AT_rich Low_complexity Low_complexity 1 38 0 307 273 51 51 chr9 28280068 28280321 -113991123 + L1M4 LINE L1 2843 3095 -3051 5044 70 2 0 chr9 28280638 28281553 -113989891 - L1PA5 LINE L1 -512 5642 4726 4052 58 0 12 chr9 28281553 28282071 -113989373 + L1PA5 LINE L1 5640 6151 -3 25 0 0 0 chr9 28282071 28282096 -113989348 + AT_rich Low_complexity Low_complexity 1 25 0 225 383 31 39 chr9 28282216 28282344 -113989100 + L2 LINE L2 3136 3262 -10 359 300 0 42 chr9 28282387 28282507 -113988937 + MIR SINE MIR 33 147 -61 24 0 0 0 chr9 28282542 28282566 -113988878 + AT_rich Low_complexity Low_complexity 1 24 0 746 245 159 32 chr9 28282726 28283226 -113988218 + MLT1G1 LTR MaLR 7 590 0 623 276 68 41 chr9 28284857 28285078 -113986366 + MIR SINE MIR 6 232 -30 335 200 57 14 chr9 28285175 28285245 -113986199 - MIR SINE MIR -165 97 25 331 333 59 7 chr9 28285314 28285449 -113985995 - MIR3 SINE MIR -64 144 3 532 190 152 13 chr9 28285653 28285788 -113985656 + MER5A DNA MER1_type 4 160 -29 907 164 0 99 chr9 28285813 28286045 -113985399 - MER20 DNA MER1_type -4 215 7 283 236 0 56 chr9 28286245 28286334 -113985110 + LTR16C LTR ERVL 371 488 -3 24 32 0 0 chr9 28287074 28287105 -113984339 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 28287874 28287897 -113983547 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr9 28288201 28288230 -113983214 + AT_rich Low_complexity Low_complexity 1 29 0 614 280 105 18 chr9 28289553 28289839 -113981605 - MLT1J LTR MaLR -160 351 41 360 0 0 0 chr9 28289865 28289905 -113981539 + (CA)n Simple_repeat Simple_repeat 2 41 0 2454 54 0 3 chr9 28290407 28290705 -113980739 - AluY SINE Alu -14 297 1 4442 193 45 12 chr9 28290711 28292216 -113979228 - L1P4 LINE L1 -467 7137 5589 1037 185 15 0 chr9 28292210 28292415 -113979029 - L1 LINE L1 -1865 4281 4074 * 1814 104 92 19 chr9 28292429 28292746 -113978698 + THE1C LTR MaLR 1 340 -35 8879 121 55 36 chr9 28292746 28294277 -113977167 + THE1C-int LTR MaLR 20 1580 0 2139 144 22 16 chr9 28294277 28294646 -113976798 + THE1C LTR MaLR 1 371 -4 2556 240 10 0 chr9 28294647 28295271 -113976173 - L1P4 LINE L1 -2080 5504 4875 4654 225 34 28 chr9 28295302 28297177 -113974267 - L1P4 LINE L1 -3525 4059 2204 377 316 5 10 chr9 28297431 28297628 -113973816 - L1P4 LINE L1 -5269 2305 2084 650 299 53 37 chr9 28297676 28298054 -113973390 - L1P4 LINE L1 -6209 1365 982 239 183 0 17 chr9 28298121 28298181 -113973263 - L1MCa LINE L1 -4362 2064 2006 * 249 299 0 0 chr9 28298159 28298246 -113973198 - L1MC4 LINE L1 -1342 6980 6894 264 200 0 0 chr9 28298248 28298308 -113973136 + (TA)n Simple_repeat Simple_repeat 2 61 0 214 211 0 0 chr9 28298358 28298396 -113973048 + (TA)n Simple_repeat Simple_repeat 1 38 0 693 230 34 49 chr9 28298399 28298664 -113972780 - L1M4 LINE L1 -944 5202 4942 342 300 0 33 chr9 28298677 28298797 -113972647 - MER21B LTR ERV1 -415 448 333 321 264 118 18 chr9 28298853 28298963 -113972481 + L2 LINE L2 3186 3306 -7 359 264 164 0 chr9 28299141 28299281 -113972163 - MIR SINE MIR -25 237 75 305 323 111 14 chr9 28299935 28300116 -113971328 + MIR SINE MIR 8 203 -59 2322 198 20 6 chr9 28302368 28302909 -113968535 + L1MB8 LINE L1 5608 6156 -22 350 261 169 8 chr9 28303727 28303857 -113967587 - L2 LINE L2 -3 3310 3160 195 171 24 24 chr9 28304006 28304047 -113967397 - L2 LINE L2 -375 2939 2899 192 302 101 82 chr9 28304166 28304434 -113967010 - L2 LINE L2 -585 2729 2457 460 267 34 0 chr9 28304762 28304908 -113966536 + LTR16A1 LTR ERVL 307 457 0 1064 298 92 49 chr9 28305053 28305667 -113965777 + L2 LINE L2 1059 1646 -1667 486 0 0 0 chr9 28305667 28305721 -113965723 + (TG)n Simple_repeat Simple_repeat 2 55 0 1064 298 92 49 chr9 28305721 28305803 -113965641 + L2 LINE L2 1646 3313 0 224 167 21 0 chr9 28306088 28306136 -113965308 + (TTA)n Simple_repeat Simple_repeat 2 50 0 208 287 85 32 chr9 28306769 28306863 -113964581 - MIR SINE MIR -64 144 46 252 158 0 70 chr9 28307709 28307766 -113963678 + L2 LINE L2 3261 3313 0 333 291 47 0 chr9 28310645 28310731 -113960713 - L2 LINE L2 -14 3258 3169 225 319 155 33 chr9 28311481 28311785 -113959659 + L2 LINE L2 2632 2972 -342 216 0 0 0 chr9 28311924 28311948 -113959496 + (T)n Simple_repeat Simple_repeat 1 24 0 1818 54 5 0 chr9 28311964 28312187 -113959257 - AluY SINE Alu -87 224 1 489 237 44 0 chr9 28312249 28312363 -113959081 + MER58B DNA MER1_type 222 340 -1 321 252 194 0 chr9 28312365 28312468 -113958976 + L2 LINE L2 3191 3313 0 560 247 98 81 chr9 28313963 28314259 -113957185 - MLT1J LTR MaLR -87 424 124 216 0 0 0 chr9 28314259 28314283 -113957161 + (A)n Simple_repeat Simple_repeat 1 24 0 214 406 0 10 chr9 28314441 28314537 -113956907 + L2 LINE L2 3136 3230 -42 1750 179 17 17 chr9 28315126 28315477 -113955967 + MLT1A1 LTR MaLR 15 365 0 357 278 40 53 chr9 28315706 28315857 -113955587 + MIR SINE MIR 26 174 -88 254 356 91 0 chr9 28317759 28317891 -113953553 - L2 LINE L2 -2 3311 3168 1189 266 14 36 chr9 28317960 28318374 -113953070 - L1ME1 LINE L1 -67 6099 5695 256 312 75 0 chr9 28318752 28318845 -113952599 + L2 LINE L2 3168 3267 -5 316 300 97 48 chr9 28319525 28319752 -113951692 + L2 LINE L2 3076 3313 0 392 331 106 31 chr9 28320188 28320442 -113951002 - L3 LINE CR1 -499 1078 806 221 296 91 38 chr9 28321836 28321968 -113949476 - MIR SINE MIR -123 139 1 1005 341 44 13 chr9 28321980 28322431 -113949013 - L3 LINE CR1 -99 1478 1014 345 294 147 42 chr9 28322831 28323096 -113948348 - L3 LINE CR1 -689 888 596 549 294 138 4 chr9 28323368 28323599 -113947845 - MIR SINE MIR 0 262 1 488 316 29 19 chr9 28325130 28325339 -113946105 - MIR SINE MIR 0 262 52 317 320 111 0 chr9 28326185 28326338 -113945106 + MIR SINE MIR 87 256 -6 1149 301 98 58 chr9 28326621 28327271 -113944173 - MER115 DNA AcHobo -1 692 17 551 200 185 0 chr9 28328066 28328196 -113943248 - MER5B DNA MER1_type -22 156 3 500 246 16 0 chr9 28328412 28328538 -113942906 + MER94 DNA DNA 7 134 0 277 355 169 0 chr9 28328564 28328688 -113942756 + L2 LINE L2 3119 3263 -9 748 252 117 22 chr9 28328703 28328933 -113942511 + MIR SINE MIR 11 262 0 459 274 20 27 chr9 28329023 28329169 -113942275 - MIR SINE MIR 0 262 118 927 146 43 0 chr9 28329726 28329911 -113941533 + L1PBa LINE L1 3 195 -6668 * 2989 113 157 182 chr9 28329896 28330395 -113941049 + L1PBa LINE L1 620 1130 -5733 2306 75 17 0 chr9 28330395 28330688 -113940756 - AluSg1 SINE Alu -11 298 1 1174 139 0 0 chr9 28330688 28330854 -113940590 - AluSq SINE Alu -14 299 134 2267 111 0 10 chr9 28330854 28331160 -113940284 - AluSq SINE Alu -10 303 1 2989 113 157 182 chr9 28331160 28331522 -113939922 + L1PBa LINE L1 1127 1623 -5240 19269 33 0 0 chr9 28331622 28334065 -113937379 + L1P LINE L1 2964 5406 -1456 2353 102 3 0 chr9 28334097 28334401 -113937043 + AluSp SINE Alu 1 305 -8 290 325 24 10 chr9 28334417 28334623 -113936821 + L1M4 LINE L1 2315 2523 -3623 27 0 0 0 chr9 28334749 28334776 -113936668 + AT_rich Low_complexity Low_complexity 1 27 0 324 314 46 26 chr9 28334776 28334929 -113936515 + L1M4 LINE L1 2645 2800 -3346 1170 126 30 0 chr9 28334953 28335152 -113936292 - L1MA1 LINE L1 0 6302 6098 408 283 99 7 chr9 28335279 28335431 -113936013 - L2 LINE L2 -5 3308 3143 293 313 24 0 chr9 28336043 28336126 -113935318 - MIR3 SINE MIR -14 194 110 203 0 37 0 chr9 28336269 28336296 -113935148 + (TG)n Simple_repeat Simple_repeat 1 28 0 1878 162 123 3 chr9 28336371 28336730 -113934714 - MLT2C2 LTR ERVL -62 402 1 293 370 81 6 chr9 28336741 28336914 -113934530 - MIR SINE MIR -75 187 2 374 116 246 0 chr9 28337195 28337264 -113934180 + MLT2D LTR ERVL 58 143 -271 280 236 28 0 chr9 28337266 28337338 -113934106 - MER4-int LTR ERV1 -5423 1175 1102 643 296 37 23 chr9 28338192 28338408 -113933036 + MIR SINE MIR 32 250 -12 1766 66 8 12 chr9 28341396 28341638 -113929806 - AluY SINE Alu -35 276 36 21 0 0 0 chr9 28341639 28341660 -113929784 + AT_rich Low_complexity Low_complexity 1 21 0 928 80 0 0 chr9 28341680 28341793 -113929651 - AluSg/x SINE Alu -20 292 180 25 0 0 0 chr9 28341818 28341843 -113929601 + AT_rich Low_complexity Low_complexity 1 25 0 5568 146 22 20 chr9 28342000 28343034 -113928410 - L1MA4 LINE L1 -11 6289 5254 7772 177 22 22 chr9 28343047 28344689 -113926755 - L1MA4 LINE L1 -939 5207 3567 1573 310 59 19 chr9 28345334 28346452 -113924992 - L1M4 LINE L1 -2196 3950 2788 2163 203 35 84 chr9 28346462 28346609 -113924835 + L1M1 LINE L1 17 170 -7395 242 28 0 28 chr9 28346609 28346645 -113924799 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5650 124 42 24 chr9 28346653 28348652 -113922792 - SVA Other Other -518 1369 51 234 0 0 0 chr9 28348656 28348682 -113922762 + (GGGAGA)n Simple_repeat Simple_repeat 6 31 0 2163 203 35 84 chr9 28348682 28349121 -113922323 + L1M1 LINE L1 180 592 -6973 5800 132 12 34 chr9 28349274 28349523 -113921921 - L1MA1 LINE L1 -278 7443 7190 1950 75 60 0 chr9 28349523 28349816 -113921628 - AluY SINE Alu 0 309 1 5800 132 12 34 chr9 28349816 28350921 -113920523 - L1MA1 LINE L1 -531 7190 6136 1937 79 45 21 chr9 28350921 28351212 -113920232 - AluY SINE Alu -13 298 1 5800 132 12 34 chr9 28351212 28351707 -113919737 - L1MA1 LINE L1 -1585 6136 5632 4608 110 10 7 chr9 28351816 28352544 -113918900 - L1MA1 LINE L1 -4487 3078 2349 3394 163 8 0 chr9 28352536 28353131 -113918313 - L1P LINE L1 -3170 2976 2377 * 4081 186 41 95 chr9 28353146 28354696 -113916748 - L1MA1 LINE L1 -5214 2351 625 21 0 0 0 chr9 28355410 28355431 -113916013 + AT_rich Low_complexity Low_complexity 1 21 0 324 348 37 18 chr9 28356047 28356211 -113915233 + L2 LINE L2 2921 3087 -185 225 292 34 0 chr9 28356816 28356905 -113914539 + L3b LINE CR1 1321 1412 -171 627 318 100 49 chr9 28357358 28358270 -113913174 + L1MEd LINE L1 8 965 -5154 692 242 21 47 chr9 28358280 28358470 -113912974 + MLT1F1 LTR MaLR 3 187 -355 460 176 0 17 chr9 28358490 28358609 -113912835 + CT-rich Low_complexity Low_complexity 2 118 0 1021 193 126 2 chr9 28358645 28358875 -113912569 + MLT1F1 LTR MaLR 256 560 -7 268 258 63 93 chr9 28358875 28359251 -113912193 + L1MEd LINE L1 979 1381 -4862 8366 197 21 1 chr9 28359521 28361671 -113909773 + L1M1 LINE L1 3231 5425 -2140 255 337 10 20 chr9 28362018 28362119 -113909325 - L2 LINE L2 0 3272 3173 482 335 38 8 chr9 28362399 28362599 -113908845 + MIR SINE MIR 3 206 -56 309 297 138 43 chr9 28362769 28363001 -113908443 + L2 LINE L2 3043 3296 -17 225 256 24 61 chr9 28363241 28363323 -113908121 + L2 LINE L2 3193 3271 -1 1005 173 17 11 chr9 28364613 28364792 -113906652 - AluJo SINE Alu -132 180 1 292 313 83 46 chr9 28365103 28365320 -113906124 + L2 LINE L2 2252 2476 -838 2266 110 0 16 chr9 28365528 28365845 -113905599 - AluSx SINE Alu 0 312 1 202 373 63 47 chr9 28366169 28366424 -113905020 + L2 LINE L2 2485 2743 -571 1314 173 79 47 chr9 28366868 28367145 -113904299 + AluJo SINE Alu 1 286 -26 186 189 0 0 chr9 28367647 28367684 -113903760 + A-rich Low_complexity Low_complexity 1 37 0 2717 26 0 3 chr9 28367734 28368042 -113903402 + AluYa5 SINE Alu 1 307 -4 1083 323 74 35 chr9 28370137 28370688 -113900756 + L3 LINE CR1 2 574 -1003 220 314 137 13 chr9 28370819 28370972 -113900472 + L3 LINE CR1 934 1105 -472 2011 156 6 16 chr9 28370975 28371295 -113900149 + MER1B DNA MER1_type 23 339 0 226 344 0 0 chr9 28371448 28371509 -113899935 + L3 LINE CR1 1411 1471 -106 21 0 0 0 chr9 28372040 28372061 -113899383 + AT_rich Low_complexity Low_complexity 1 21 0 969 191 22 16 chr9 28373052 28373235 -113898209 - MER5A DNA MER1_type 0 189 6 281 292 29 166 chr9 28373218 28373495 -113897949 + L2 LINE L2 3028 3266 -6 * 180 0 0 0 chr9 28373542 28373562 -113897882 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 201 39 0 0 chr9 28373561 28373587 -113897857 + (TG)n Simple_repeat Simple_repeat 2 27 0 2052 162 26 6 chr9 28373592 28373932 -113897512 - MER7A DNA MER2_type 0 346 2 213 175 0 0 chr9 28373934 28373974 -113897470 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 971 138 6 19 chr9 28374244 28374403 -113897041 - THE1-int LTR MaLR -183 1397 1241 302 192 0 0 chr9 28374667 28374719 -113896725 - MLT1E3 LTR MaLR -572 52 1 21 36 0 0 chr9 28374727 28374755 -113896689 + AT_rich Low_complexity Low_complexity 1 28 0 333 330 124 58 chr9 28374803 28375237 -113896207 - L3 LINE CR1 -24 1553 1091 263 260 40 20 chr9 28375296 28375396 -113896048 + L1P LINE L1 3828 3929 -2217 22 0 0 0 chr9 28375396 28375418 -113896026 + AT_rich Low_complexity Low_complexity 1 22 0 186 133 0 0 chr9 28375880 28375910 -113895534 + (TA)n Simple_repeat Simple_repeat 1 30 0 313 312 73 65 chr9 28375932 28376345 -113895099 + L1M4 LINE L1 4428 4843 -1303 311 285 114 19 chr9 28377150 28377308 -113894136 - L1MCb LINE L1 -4848 1197 1025 192 364 50 43 chr9 28379057 28379197 -113892247 + MIR SINE MIR 20 160 -102 23 0 0 0 chr9 28379197 28379220 -113892224 + AT_rich Low_complexity Low_complexity 1 23 0 232 206 44 44 chr9 28379346 28379414 -113892030 - MLT1G1 LTR MaLR -28 567 500 233 276 92 10 chr9 28379597 28379695 -113891749 - MLT1I LTR MaLR -240 169 64 34 0 0 0 chr9 28380099 28380133 -113891311 + AT_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr9 28380133 28380158 -113891286 + (TA)n Simple_repeat Simple_repeat 2 26 0 7687 94 29 5 chr9 28380393 28381579 -113889865 + L1PB1 LINE L1 1529 2742 -4121 11061 187 15 13 chr9 28381591 28385024 -113886420 + L1PB1 LINE L1 3431 6864 -3 377 304 27 133 chr9 28385046 28385421 -113886023 - L2 LINE L2 -5 3267 2933 303 341 54 0 chr9 28386062 28386191 -113885253 - L2 LINE L2 -1 3312 3177 2827 182 56 14 chr9 28388183 28388772 -113882672 + L1MC3 LINE L1 6045 6658 -1127 1176 177 120 57 chr9 28388782 28389116 -113882328 + MLT1A1 LTR MaLR 11 365 0 3941 163 108 94 chr9 28389117 28389585 -113881859 + L1MC3 LINE L1 6655 7115 -670 309 171 40 26 chr9 28389585 28389661 -113881783 + MLT1F1 LTR MaLR 35 111 -456 3941 163 108 94 chr9 28389661 28390232 -113881212 + L1MC3 LINE L1 7115 7784 -1 197 282 28 56 chr9 28390484 28390555 -113880889 + L2 LINE L2 2932 3000 -272 409 235 0 0 chr9 28390556 28390637 -113880807 + MER63 DNA MER1_type 672 752 -310 524 281 21 46 chr9 28390822 28391019 -113880425 + MIR SINE MIR 33 222 -40 230 313 200 13 chr9 28391315 28391465 -113879979 - MIR SINE MIR -65 197 20 186 167 0 0 chr9 28392241 28392277 -113879167 + (CAATT)n Simple_repeat Simple_repeat 2 37 0 186 284 40 40 chr9 28392278 28392352 -113879092 - L2 LINE L2 -1 3312 3239 292 232 2 5 chr9 28392393 28392467 -113878977 + MIR SINE MIR 75 143 -65 290 351 18 9 chr9 28392515 28392626 -113878818 + MIR3 SINE MIR 12 123 -85 574 283 107 37 chr9 28393118 28393362 -113878082 + MLT1I LTR MaLR 100 360 -49 371 377 49 38 chr9 28393398 28393767 -113877677 - L2 LINE L2 -48 3224 2852 355 214 325 0 chr9 28393811 28393937 -113877507 - MIR SINE MIR -16 246 80 289 279 29 10 chr9 28393937 28394041 -113877403 - L2 LINE L2 -529 2785 2680 2068 123 31 0 chr9 28394965 28395257 -113876187 + AluSx SINE Alu 1 301 -11 2192 115 56 11 chr9 28395313 28395670 -113875774 + THE1C LTR MaLR 1 373 -2 24 0 0 0 chr9 28395720 28395744 -113875700 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr9 28396173 28396203 -113875241 + AT_rich Low_complexity Low_complexity 1 30 0 664 266 15 70 chr9 28398764 28398963 -113872481 + MER5A DNA MER1_type 2 189 0 217 299 26 8 chr9 28398965 28399056 -113872388 - MIR SINE MIR -68 140 47 317 246 156 25 chr9 28399931 28400053 -113871391 + MIR SINE MIR 51 188 -74 533 238 25 0 chr9 28400063 28400185 -113871259 - MER94 DNA DNA -9 125 1 223 294 322 0 chr9 28400577 28400723 -113870721 - MIR SINE MIR -11 251 59 24 32 0 0 chr9 28400996 28401027 -113870417 + AT_rich Low_complexity Low_complexity 1 31 0 349 300 50 31 chr9 28401035 28401195 -113870249 - L1ME3 LINE L1 -276 5886 5724 248 149 0 21 chr9 28401223 28401270 -113870174 - HAL1 LINE L1 -358 2149 2104 1106 190 112 20 chr9 28401427 28401722 -113869722 - MER31A LTR ERV1 0 485 164 5660 166 36 10 chr9 28401722 28403287 -113868157 + L1MA4 LINE L1 4666 6286 -14 1032 136 5 15 chr9 28403287 28403485 -113867959 - L1MA8 LINE L1 -18 6273 6078 2738 71 0 0 chr9 28403831 28404183 -113867261 + L1PA6 LINE L1 5798 6149 -5 263 283 131 10 chr9 28404392 28404491 -113866953 + MIR SINE MIR 32 142 -120 202 333 0 0 chr9 28404647 28404704 -113866740 + MER5A DNA MER1_type 35 91 -98 308 320 227 20 chr9 28404897 28405100 -113866344 + MIR SINE MIR 6 250 -12 1209 113 72 23 chr9 28405123 28405312 -113866132 + L1MA1 LINE L1 6071 6274 -28 192 40 0 0 chr9 28405312 28405337 -113866107 + (TA)n Simple_repeat Simple_repeat 2 26 0 1209 113 72 23 chr9 28405337 28405368 -113866076 + L1MA1 LINE L1 6274 6302 0 597 269 137 23 chr9 28405594 28405813 -113865631 - MIR SINE MIR -2 260 17 1929 157 219 41 chr9 28406413 28406905 -113864539 + LTR18B LTR ERVL 1 580 -34 7249 51 2 2 chr9 28407108 28408194 -113863250 + L1P2 LINE L1 4457 5542 -612 244 321 10 114 chr9 28408750 28408943 -113862501 - L2 LINE L2 0 3272 3100 314 343 19 8 chr9 28410430 28410573 -113860871 + MIR SINE MIR 2 147 -67 1090 232 129 72 chr9 28410577 28411051 -113860393 + MLT1D LTR MaLR 5 505 0 272 297 0 33 chr9 28411446 28411537 -113859907 - MIR SINE MIR 0 262 175 22 0 0 0 chr9 28411797 28411819 -113859625 + AT_rich Low_complexity Low_complexity 1 22 0 259 329 53 86 chr9 28412002 28412339 -113859105 + L2 LINE L2 2934 3259 -13 224 367 0 0 chr9 28412428 28412507 -113858937 - L2 LINE L2 -3 3310 3232 498 214 0 19 chr9 28412636 28412739 -113858705 + MER5A DNA MER1_type 5 105 -84 190 255 0 0 chr9 28412751 28412798 -113858646 + MIR SINE MIR 216 262 0 714 255 124 92 chr9 28413336 28413826 -113857618 - MLT1J LTR MaLR -4 507 2 301 311 0 25 chr9 28413878 28413997 -113857447 - L2 LINE L2 -970 2344 2229 254 284 55 28 chr9 28414631 28414740 -113856704 + L3 LINE CR1 1092 1203 -374 4981 145 16 5 chr9 28414861 28416358 -113855086 + L1MA8 LINE L1 4592 6107 -184 1100 202 108 23 chr9 28416359 28416719 -113854725 + MSTC LTR MaLR 1 423 -5 721 190 39 0 chr9 28416724 28416903 -113854541 + L1MA8 LINE L1 6104 6289 -2 350 339 42 25 chr9 28416981 28417426 -113854018 + L1M4 LINE L1 3976 4433 -1713 1679 353 73 12 chr9 28417929 28418996 -113852448 - L2 LINE L2 0 3313 2174 998 244 79 16 chr9 28419506 28419821 -113851623 + LTR16A LTR ERVL 113 447 -3 1120 208 29 45 chr9 28420431 28420777 -113850667 + MER33 DNA MER1_type 1 319 -5 288 0 0 0 chr9 28421037 28421069 -113850375 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 2597 246 17 31 chr9 28421365 28422012 -113849432 + L1PA15 LINE L1 11 648 -6933 2065 174 28 0 chr9 28422012 28422369 -113849075 + MER50 LTR ERV1 1 367 -367 1361 174 71 35 chr9 28422365 28422675 -113848769 + LTR9 LTR ERV1 292 612 0 * 17506 197 23 12 chr9 28422687 28428258 -113843186 + L1PA15 LINE L1 1968 7601 -2 374 200 80 40 chr9 28428776 28428901 -113842543 - MER102a DNA MER1_type -2 328 199 1543 143 95 76 chr9 28428932 28429289 -113842155 - L1MA9 LINE L1 -13 6299 5936 5555 57 4 0 chr9 28429571 28430270 -113841174 + L1PA7 LINE L1 5453 6154 0 212 100 25 0 chr9 28430934 28430974 -113840470 + (GA)n Simple_repeat Simple_repeat 2 42 0 182 315 0 0 chr9 28432267 28432321 -113839123 + MIR SINE MIR 44 97 -111 2110 119 17 0 chr9 28432522 28432816 -113838628 + AluSc SINE Alu 4 302 -7 397 200 0 0 chr9 28433009 28433079 -113838365 - L2 LINE L2 -50 3222 3153 244 342 63 32 chr9 28433587 28433745 -113837699 - L2 LINE L2 -11 3302 3140 277 221 0 0 chr9 28433750 28433818 -113837626 - MLT1L LTR MaLR -4 611 544 1077 265 73 9 chr9 28433968 28434296 -113837148 + L1MC4 LINE L1 6458 6806 -1236 856 249 6 4 chr9 28434296 28434513 -113836931 + L1MC4 LINE L1 7485 7788 -207 1853 135 54 96 chr9 28435515 28435856 -113835588 + MLT1B LTR MaLR 1 324 -66 2219 113 0 0 chr9 28435856 28436167 -113835277 - AluSx SINE Alu -1 311 1 1853 135 54 96 chr9 28436167 28436232 -113835212 + MLT1B LTR MaLR 324 390 0 28 0 0 0 chr9 28436414 28436442 -113835002 + AT_rich Low_complexity Low_complexity 1 28 0 289 353 49 22 chr9 28437447 28437631 -113833813 + L2 LINE L2 3122 3310 -3 1480 194 41 9 chr9 28438122 28438441 -113833003 + L1MB5 LINE L1 5536 5864 -310 4186 157 13 12 chr9 28438444 28439210 -113832234 - L1MA8 LINE L1 -4 6287 5521 893 223 5 28 chr9 28439210 28439425 -113832019 + L1MB5 LINE L1 5959 6168 -6 2665 136 22 11 chr9 28439754 28440202 -113831242 + L1MA10 LINE L1 5880 6332 -2 2138 94 0 85 chr9 28440211 28440540 -113830904 + AluSg SINE Alu 1 301 -9 6883 66 6 0 chr9 28440540 28441674 -113829770 + L1PA7 LINE L1 5014 6154 0 271 195 98 49 chr9 28442325 28442448 -113828996 - L1ME4a LINE L1 -2 6119 5991 245 359 18 100 chr9 28442676 28442896 -113828548 + L2 LINE L2 3009 3210 -62 2671 229 93 25 chr9 28443190 28443759 -113827685 + L1MEc LINE L1 44 680 -5716 2658 107 0 3 chr9 28443759 28444122 -113827322 + THE1B LTR MaLR 1 362 -2 2671 229 93 25 chr9 28444122 28444319 -113827125 + L1MEc LINE L1 680 862 -5534 24 53 0 0 chr9 28445316 28445354 -113826090 + GC_rich Low_complexity Low_complexity 1 38 0 240 185 0 0 chr9 28445952 28446006 -113825438 + (CA)n Simple_repeat Simple_repeat 1 54 0 2264 107 0 0 chr9 28446293 28446591 -113824853 + AluSx SINE Alu 1 298 -14 523 305 8 0 chr9 28446608 28446736 -113824708 + L2 LINE L2 3176 3304 -9 1059 283 66 42 chr9 28446811 28447264 -113824180 - MLT1J LTR MaLR -17 494 31 572 100 0 0 chr9 28447714 28447794 -113823650 - MADE1 DNA Mariner 0 80 1 1077 260 22 6 chr9 28449654 28449977 -113821467 + L1MA9 LINE L1 5937 6264 -48 3932 186 64 9 chr9 28449986 28450803 -113820641 - L1MB5 LINE L1 -31 6143 5282 225 333 13 13 chr9 28451058 28451133 -113820311 - L2 LINE L2 -3 3269 3195 1362 176 48 65 chr9 28451728 28452018 -113819426 + AluJo SINE Alu 5 289 -23 39 0 0 0 chr9 28452019 28452058 -113819386 + AT_rich Low_complexity Low_complexity 1 39 0 425 366 17 6 chr9 28452058 28452230 -113819214 + MIR SINE MIR 3 176 -86 9192 143 26 8 chr9 28452732 28454253 -113817191 - Ricksha DNA DNA -7 3239 1692 310 95 0 0 chr9 28454257 28454299 -113817145 - Ricksha DNA DNA -1764 282 241 570 189 9 0 chr9 28454318 28454424 -113817020 - Ricksha DNA DNA -1067 114 8 249 231 108 0 chr9 28454512 28454577 -113816867 + LTR50 LTR ERVL 212 283 -512 724 239 147 7 chr9 28454655 28454940 -113816504 + LTR50 LTR ERVL 471 795 0 647 269 64 5 chr9 28455145 28455364 -113816080 + L1MB8 LINE L1 5941 6172 -6 403 346 54 39 chr9 28455703 28455908 -113815536 - MIR SINE MIR -6 256 49 22 0 0 0 chr9 28457119 28457141 -113814303 + AT_rich Low_complexity Low_complexity 1 22 0 363 60 0 0 chr9 28457439 28457489 -113813955 + (CATA)n Simple_repeat Simple_repeat 2 51 0 272 253 0 13 chr9 28457644 28457719 -113813725 - LTR33A LTR ERVL -4 519 446 330 286 18 28 chr9 28458166 28458335 -113813109 - MLT1I LTR MaLR -263 175 12 2406 159 24 5 chr9 28458982 28459397 -113812047 - MSTB LTR MaLR -3 423 1 330 357 180 24 chr9 28459739 28460333 -113811111 + L2 LINE L2 1947 2633 -681 232 310 14 0 chr9 28460382 28460453 -113810991 + MLT1K LTR MaLR 9 80 -508 344 336 0 9 chr9 28461166 28461282 -113810162 - MIR3 SINE MIR -6 202 88 180 125 0 0 chr9 28461865 28461897 -113809547 + (CAA)n Simple_repeat Simple_repeat 3 34 0 728 217 127 0 chr9 28462207 28462364 -113809080 - AluJb SINE Alu -6 306 130 198 71 0 0 chr9 28462370 28462398 -113809046 + (TTG)n Simple_repeat Simple_repeat 2 29 0 305 324 18 65 chr9 28462417 28462587 -113808857 + L3 LINE CR1 1344 1505 -72 5659 152 35 17 chr9 28462587 28463975 -113807469 + L1MA5 LINE L1 4876 6296 -4 615 224 8 0 chr9 28465176 28465310 -113806134 - MER97c DNA MER1_type? -915 175 41 197 282 125 24 chr9 28465906 28466080 -113805364 - MIR SINE MIR -72 136 3 5099 170 38 27 chr9 28466713 28468713 -113802731 - L1MA9 LINE L1 -1 6375 4356 17643 30 0 0 chr9 28468714 28470841 -113800603 + L1P LINE L1 2134 4260 -1886 2935 148 8 24 chr9 28470849 28470930 -113800514 - L1MA9 LINE L1 -1870 4340 4259 2715 81 3 18 chr9 28470930 28471311 -113800133 - L1PA8A LINE L1 -1 6130 5756 2935 148 8 24 chr9 28471311 28471734 -113799710 - L1MA9 LINE L1 -1951 4259 3844 763 244 6 0 chr9 28471734 28471894 -113799550 - FRAM SINE Alu -5 161 1 2135 146 39 17 chr9 28471920 28472276 -113799168 - THE1B LTR MaLR 0 364 1 10441 109 43 8 chr9 28472276 28473699 -113797745 - THE1B-int LTR MaLR 0 1580 99 1784 146 55 55 chr9 28473699 28474063 -113797381 - THE1B LTR MaLR 0 364 1 10441 109 43 8 chr9 28474063 28474166 -113797278 - THE1B-int LTR MaLR -1481 99 1 2214 134 33 19 chr9 28474166 28474525 -113796919 - THE1B LTR MaLR 0 364 1 634 171 36 0 chr9 28474525 28474635 -113796809 - FLAM_C SINE Alu -18 115 1 4114 232 74 17 chr9 28474637 28475503 -113795941 - L1MA9 LINE L1 -2361 3849 2885 2051 148 0 0 chr9 28475503 28475794 -113795650 - AluSx SINE Alu -19 293 3 4114 232 74 17 chr9 28475794 28476209 -113795235 - L1MA9 LINE L1 -3325 2885 2495 5343 234 84 40 chr9 28476214 28476532 -113794912 - L1MA9 LINE L1 -4357 1854 1552 2239 89 0 49 chr9 28476532 28476857 -113794587 - AluSq SINE Alu -2 311 3 5343 234 84 40 chr9 28476857 28476868 -113794576 - L1MA9 LINE L1 -4659 1552 1543 1809 69 52 0 chr9 28476868 28477131 -113794313 - AluY SINE Alu 0 315 41 5343 234 84 40 chr9 28477131 28478603 -113792841 - L1MA9 LINE L1 -4668 1543 2 2524 75 0 0 chr9 28478870 28479178 -113792266 - AluY SINE Alu -3 308 1 279 340 32 45 chr9 28479456 28479612 -113791832 + L2 LINE L2 2897 3050 -222 261 0 0 0 chr9 28479791 28479820 -113791624 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 436 274 72 67 chr9 28481679 28481887 -113789557 - MER20 DNA MER1_type -9 210 2 2525 114 8 16 chr9 28483145 28483514 -113787930 + THE1C LTR MaLR 1 366 -9 2003 256 80 16 chr9 28483586 28484137 -113787307 + MLT1G1 LTR MaLR 1 586 -9 180 97 0 0 chr9 28484257 28484288 -113787156 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2336 82 0 10 chr9 28484288 28484582 -113786862 - AluY SINE Alu -20 291 1 25 65 0 0 chr9 28484602 28484648 -113786796 + AT_rich Low_complexity Low_complexity 1 46 0 256 257 81 48 chr9 28484773 28484983 -113786461 + L1ME4a LINE L1 5879 6095 -26 1349 239 3 58 chr9 28486430 28486790 -113784654 + MLT2B1 LTR ERVL 1 340 -180 2405 84 0 0 chr9 28487146 28487444 -113784000 + AluY SINE Alu 1 298 -13 1532 273 50 39 chr9 28487807 28488342 -113783102 + MER68 LTR ERV1 10 550 -12 457 278 112 58 chr9 28488365 28488570 -113782874 + MER68-int LTR ERV1 18 233 -3958 * 947 298 36 28 chr9 28488414 28488776 -113782668 + HERVL68 LTR ERVL 28 392 -2645 * 3898 211 50 40 chr9 28488743 28489869 -113781575 + HERVL68 LTR ERVL 517 1653 -1384 797 175 41 6 chr9 28489874 28490045 -113781399 + HERVL68 LTR ERVL 2842 3018 -19 1192 211 52 4 chr9 28490050 28490301 -113781143 + MER68 LTR ERV1 6 268 -294 1367 248 26 28 chr9 28490312 28490753 -113780691 + MLT1C LTR MaLR 6 447 -20 1746 142 78 36 chr9 28490753 28490945 -113780499 + THE1C LTR MaLR 1 184 -191 231 36 0 0 chr9 28490945 28490973 -113780471 + (TC)n Simple_repeat Simple_repeat 1 28 0 1746 142 78 36 chr9 28490973 28491140 -113780304 + THE1C LTR MaLR 184 375 0 1367 248 26 28 chr9 28491140 28491161 -113780283 + MLT1C LTR MaLR 447 467 0 699 277 21 35 chr9 28491163 28491452 -113779992 + MER68 LTR ERV1 272 556 -6 364 315 89 65 chr9 28491783 28492156 -113779288 + L1MEd LINE L1 931 1273 -1234 23 54 0 0 chr9 28492466 28492503 -113778941 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr9 28492786 28492818 -113778626 + AT_rich Low_complexity Low_complexity 1 32 0 783 172 0 0 chr9 28492913 28493035 -113778409 + FLAM_A SINE Alu 1 122 -11 311 300 88 6 chr9 28493200 28493360 -113778084 + L1MEd LINE L1 2341 2513 -3633 630 274 112 82 chr9 28493476 28494001 -113777443 + L1MEd LINE L1 2651 3191 -2955 1514 122 8 8 chr9 28494074 28494312 -113777132 - LTR62 LTR ERVK -2 717 480 2604 120 52 29 chr9 28494369 28494845 -113776599 - LTR62 LTR ERVK -232 487 1 311 278 78 41 chr9 28494856 28495201 -113776243 + L1MEd LINE L1 3397 3754 -2392 1206 185 141 7 chr9 28495204 28495501 -113775943 + MLT1C LTR MaLR 1 337 -130 1616 167 3 45 chr9 28495516 28495699 -113775745 + AluJb SINE Alu 2 168 -144 8307 54 4 4 chr9 28495699 28496706 -113774738 - LTR13 LTR ERVK 0 1007 1 1616 167 3 45 chr9 28496706 28496833 -113774611 + AluJb SINE Alu 168 299 -13 439 233 8 42 chr9 28496841 28496961 -113774483 + MLT1C LTR MaLR 352 467 0 673 242 141 58 chr9 28497268 28497595 -113773849 - MLT1H LTR MaLR 0 549 196 2065 120 10 20 chr9 28498577 28498876 -113772568 + AluSc SINE Alu 1 296 -13 751 244 49 0 chr9 28499645 28499850 -113771594 - L1ME3 LINE L1 -8 6154 5940 2586 236 121 19 chr9 28499853 28500772 -113770672 - L1MEc LINE L1 -5373 1023 11 553 197 33 0 chr9 28500750 28500872 -113770572 - L1ME3 LINE L1 -214 6017 5892 * 23 54 0 0 chr9 28500905 28500942 -113770502 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr9 28501797 28501842 -113769602 + AT_rich Low_complexity Low_complexity 1 45 0 1582 130 9 0 chr9 28502184 28502407 -113769037 + AluSp SINE Alu 65 289 -24 421 136 0 0 chr9 28502544 28502610 -113768834 + Alu SINE Alu 222 287 -23 6792 50 27 1 chr9 28503681 28505398 -113766046 + L1PA7 LINE L1 4409 6154 0 185 197 0 115 chr9 28507190 28507251 -113764193 - MIR SINE MIR -100 162 109 213 121 0 0 chr9 28508158 28508191 -113763253 + (TC)n Simple_repeat Simple_repeat 1 33 0 2420 84 0 0 chr9 28509675 28509983 -113761461 + AluY SINE Alu 1 308 -3 334 344 167 7 chr9 28510724 28511012 -113760432 - L2 LINE L2 -342 2972 2639 30 59 0 0 chr9 28512449 28512500 -113758944 + AT_rich Low_complexity Low_complexity 1 51 0 190 325 0 52 chr9 28514245 28514322 -113757122 + MIR SINE MIR 179 251 -11 2656 42 0 0 chr9 28515801 28516131 -113755313 - AluY SINE Alu 0 330 1 207 0 0 0 chr9 28516228 28516251 -113755193 + (A)n Simple_repeat Simple_repeat 1 23 0 2295 129 8 30 chr9 28516434 28516806 -113754638 - THE1B LTR MaLR 0 364 1 263 348 84 22 chr9 28518825 28519003 -113752441 + L3 LINE CR1 1328 1516 -61 299 75 0 0 chr9 28519321 28519361 -113752083 + LTR23 LTR ERV1 320 359 -78 27 0 0 0 chr9 28519361 28519388 -113752056 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr9 28521273 28521299 -113750145 + AT_rich Low_complexity Low_complexity 1 26 0 185 159 23 0 chr9 28522584 28522628 -113748816 + CT-rich Low_complexity Low_complexity 1 45 0 2542 44 3 0 chr9 28522780 28523078 -113748366 - AluY SINE Alu -12 299 1 316 266 195 8 chr9 28526011 28526139 -113745305 + MIR SINE MIR 44 195 -67 239 368 58 0 chr9 28526135 28526222 -113745222 - L2 LINE L2 -34 3238 3147 * 471 277 61 53 chr9 28527098 28527477 -113743967 + L1ME4a LINE L1 5582 5963 -158 307 188 29 14 chr9 28527485 28527554 -113743890 - L1MCa LINE L1 -4362 2064 1995 * 366 250 0 22 chr9 28527508 28527600 -113743844 + L1MC4 LINE L1 6614 6703 -1339 318 256 98 0 chr9 28527622 28527704 -113743740 + L1MC4 LINE L1 6614 6703 -1339 213 224 0 0 chr9 28527709 28527767 -113743677 + (TA)n Simple_repeat Simple_repeat 1 58 0 275 183 207 67 chr9 28527767 28527931 -113743513 + L1ME4a LINE L1 5935 6121 0 344 275 89 27 chr9 28530238 28530444 -113741000 + MIR SINE MIR 20 242 -20 215 326 79 22 chr9 28531571 28531660 -113739784 - L3 LINE CR1 -225 1352 1259 310 137 0 123 chr9 28532539 28532612 -113738832 - MADE1 DNA Mariner -2 78 15 1048 269 114 45 chr9 28533763 28533846 -113737598 + L2 LINE L2 1164 1240 -2074 1657 136 94 28 chr9 28533846 28534198 -113737246 - THE1C LTR MaLR 0 375 1 1048 269 114 45 chr9 28534198 28534511 -113736933 + L2 LINE L2 1240 1605 -1709 1487 212 31 22 chr9 28534511 28534869 -113736575 + MLT1A1 LTR MaLR 5 365 0 1048 269 114 45 chr9 28534869 28534980 -113736464 + L2 LINE L2 1605 1707 -1607 342 115 0 0 chr9 28535023 28535075 -113736369 + (TG)n Simple_repeat Simple_repeat 1 52 0 386 301 12 58 chr9 28535083 28535119 -113736325 - MIR3 SINE MIR -21 187 151 646 250 23 23 chr9 28535119 28535295 -113736149 - MER5B DNA MER1_type -1 177 2 386 301 12 58 chr9 28535295 28535431 -113736013 - MIR3 SINE MIR -57 151 23 555 264 50 33 chr9 28536197 28536379 -113735065 + MIR SINE MIR 8 192 -70 487 285 85 6 chr9 28536604 28536769 -113734675 + MIR SINE MIR 23 200 -62 392 273 87 61 chr9 28537439 28537784 -113733660 - LTR16A1 LTR ERVL 0 457 104 427 257 131 0 chr9 28538321 28538496 -113732948 + MER5C DNA MER1_type 127 324 0 552 241 32 80 chr9 28539585 28539834 -113731610 - MLT1K LTR MaLR -16 572 336 660 86 0 0 chr9 28540379 28540472 -113730972 - L1PA11 LINE L1 -8 6166 6074 605 274 125 5 chr9 28541957 28542158 -113729286 + MIR SINE MIR 28 236 -26 730 287 170 23 chr9 28542564 28543149 -113728295 + L2 LINE L2 2647 3308 -5 218 323 32 11 chr9 28543214 28543307 -113728137 - L3 LINE CR1 -214 1363 1269 203 88 29 0 chr9 28543332 28543366 -113728078 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 369 136 0 0 chr9 28543369 28543435 -113728009 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 287 219 237 0 chr9 28544447 28544561 -113726883 - MIR SINE MIR 0 262 122 355 289 64 40 chr9 28544583 28544756 -113726688 - MIR SINE MIR -66 196 20 212 215 41 93 chr9 28545481 28545591 -113725853 + MIR SINE MIR 43 147 -104 2136 141 0 0 chr9 28545635 28545933 -113725511 + AluSx SINE Alu 1 298 -14 8674 61 14 151 chr9 28545959 28547563 -113723881 + SVA Other Other 2 1385 -1 568 336 39 57 chr9 28547638 28547921 -113723523 + L2 LINE L2 2995 3272 0 21 104 0 0 chr9 28547940 28548017 -113723427 + AT_rich Low_complexity Low_complexity 1 77 0 1052 204 84 63 chr9 28548965 28549398 -113722046 - MER39 LTR ERV1 -85 622 1 1634 190 3 13 chr9 28549549 28549859 -113721585 - AluJb SINE Alu -5 307 1 250 279 252 0 chr9 28549862 28549973 -113721471 + MIR SINE MIR 116 254 -8 201 94 0 0 chr9 28549973 28550005 -113721439 + (TTA)n Simple_repeat Simple_repeat 2 33 0 638 312 111 4 chr9 28550149 28550383 -113721061 - L2 LINE L2 -205 3108 2850 880 225 26 35 chr9 28550726 28550957 -113720487 - MIR SINE MIR 0 262 34 238 240 20 0 chr9 28553088 28553138 -113718306 - L2 LINE L2 -1 3271 3221 21 0 0 0 chr9 28553593 28553614 -113717830 + AT_rich Low_complexity Low_complexity 1 21 0 885 248 31 5 chr9 28553665 28553887 -113717557 + MIR SINE MIR 21 248 -14 389 336 90 27 chr9 28553881 28554137 -113717307 + L3 LINE CR1 199 470 -1107 * 344 225 20 133 chr9 28554137 28554288 -113717156 + MER94 DNA DNA 1 134 0 828 302 33 52 chr9 28554368 28554732 -113716712 + L3 LINE CR1 588 944 -633 375 195 273 23 chr9 28554840 28554968 -113716476 + L3 LINE CR1 1407 1566 -11 289 297 22 0 chr9 28556777 28556868 -113714576 + MIR SINE MIR 57 149 -113 222 290 14 0 chr9 28557982 28558051 -113713393 + MIR SINE MIR 177 246 -16 212 360 90 0 chr9 28558100 28558200 -113713244 + L2 LINE L2 3159 3267 -5 279 29 0 0 chr9 28558346 28558380 -113713064 - U2 snRNA snRNA -154 34 1 210 71 0 0 chr9 28560194 28560222 -113711222 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2170 96 0 0 chr9 28561677 28561993 -113709451 - AluSx SINE Alu 0 316 1 289 256 59 35 chr9 28562296 28562440 -113709004 + MIR SINE MIR 54 196 -12 27 0 0 0 chr9 28562908 28562935 -113708509 + AT_rich Low_complexity Low_complexity 1 27 0 1098 157 0 0 chr9 28563016 28563188 -113708256 - FRAM SINE Alu -10 166 1 198 216 247 52 chr9 28563299 28563328 -113708116 - L2 LINE L2 -4 3268 3246 1977 188 121 13 chr9 28563328 28563790 -113707654 - MER67D LTR ERV1 0 514 3 198 216 247 52 chr9 28563790 28563857 -113707587 - L2 LINE L2 -26 3246 3153 21 0 0 0 chr9 28565112 28565133 -113706311 + AT_rich Low_complexity Low_complexity 1 21 0 182 250 14 0 chr9 28566126 28566198 -113705246 + (TA)n Simple_repeat Simple_repeat 1 73 0 708 282 52 28 chr9 28567650 28567902 -113703542 - MIR SINE MIR -1 261 2 277 410 56 0 chr9 28568531 28568726 -113702718 + L3b LINE CR1 1104 1309 -274 356 351 53 55 chr9 28568772 28569188 -113702256 - L2 LINE L2 -54 3218 2804 425 258 10 21 chr9 28570767 28570864 -113700580 - L2 LINE L2 -1 3271 3176 739 250 48 6 chr9 28570892 28571060 -113700384 + MER5B DNA MER1_type 1 175 -3 960 200 9 0 chr9 28573102 28573317 -113698127 + L1MA6 LINE L1 6084 6300 0 21 0 0 0 chr9 28573616 28573637 -113697807 + AT_rich Low_complexity Low_complexity 1 21 0 631 299 6 0 chr9 28574202 28574379 -113697065 + LTR33 LTR ERVL 1 178 -343 22 0 0 0 chr9 28574935 28574957 -113696487 + AT_rich Low_complexity Low_complexity 1 22 0 2276 106 6 3 chr9 28575996 28576307 -113695137 + AluSx SINE Alu 1 312 0 11825 195 47 18 chr9 28578720 28583730 -113687714 + L1PA16 LINE L1 1761 6858 -11 1701 181 74 47 chr9 28584088 28584575 -113686869 + MLT1D LTR MaLR 6 505 0 1281 272 88 24 chr9 28584929 28585507 -113685937 + MLT1L LTR MaLR 1 615 0 720 254 144 27 chr9 28587295 28587784 -113683660 - MLT1H LTR MaLR -15 540 1 208 338 26 84 chr9 28588349 28588503 -113682941 + MIR SINE MIR 48 192 -70 2437 72 26 0 chr9 28589101 28589406 -113682038 + AluSp SINE Alu 1 313 0 29 70 0 0 chr9 28589432 28589489 -113681955 + AT_rich Low_complexity Low_complexity 1 57 0 1427 233 34 34 chr9 28590131 28590517 -113680927 - MLT1B LTR MaLR -4 386 1 253 409 35 16 chr9 28590605 28590862 -113680582 - L2 LINE L2 -446 2868 2607 197 342 6 95 chr9 28590912 28591070 -113680374 - MIR SINE MIR -99 163 20 199 256 0 0 chr9 28591328 28591371 -113680073 + MIR SINE MIR 109 151 -111 304 352 0 16 chr9 28592344 28592526 -113678918 + (CCA)n Simple_repeat Simple_repeat 1 179 0 271 237 62 62 chr9 28593446 28593543 -113677901 + LTR33 LTR ERVL 1 97 -424 437 260 79 45 chr9 28594888 28595065 -113676379 + MER5A DNA MER1_type 6 188 -1 240 271 195 27 chr9 28595259 28595416 -113676028 - MIR SINE MIR -64 198 23 328 151 35 35 chr9 28595804 28595890 -113675554 - L1MC5 LINE L1 -47 7914 7829 534 277 83 37 chr9 28596708 28596950 -113674494 - MIR SINE MIR -5 257 5 388 320 107 15 chr9 28596959 28597156 -113674288 + L1MC4a LINE L1 5695 5909 -1899 21 36 0 0 chr9 28597231 28597259 -113674185 + AT_rich Low_complexity Low_complexity 1 28 0 287 304 146 92 chr9 28597405 28597482 -113673962 + L2 LINE L2 3020 3091 -181 7712 58 2 60 chr9 28597482 28598511 -113672933 - LTR5 LTR ERVK 0 969 1 287 304 146 92 chr9 28598511 28598673 -113672771 + L2 LINE L2 3091 3272 0 566 316 101 3 chr9 28598813 28599054 -113672390 + MIR SINE MIR 2 261 -1 192 77 0 0 chr9 28599369 28599395 -113672049 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr9 28599511 28599540 -113671904 + AT_rich Low_complexity Low_complexity 1 29 0 1523 134 24 0 chr9 28599590 28599837 -113671607 - L1PA16 LINE L1 0 6166 5914 356 314 127 18 chr9 28599839 28600281 -113671163 + L1ME4a LINE L1 5618 6121 0 23 33 0 0 chr9 28600281 28600311 -113671133 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 28600867 28600888 -113670556 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr9 28600913 28600938 -113670506 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 1696 183 52 48 chr9 28601204 28601664 -113669780 + MLT1C LTR MaLR 6 467 0 257 171 0 66 chr9 28601670 28601746 -113669698 + L1MC5 LINE L1 7754 7824 -137 284 230 50 29 chr9 28601937 28602076 -113669368 + HAL1b LINE L1 1204 1345 -3 2316 77 0 3 chr9 28602108 28602394 -113669050 + AluY SINE Alu 1 285 -26 337 279 54 36 chr9 28603243 28603286 -113668158 - L2 LINE L2 -2 3270 3229 2277 93 0 10 chr9 28603286 28603586 -113667858 + AluSc SINE Alu 10 306 -3 337 279 54 36 chr9 28603586 28603653 -113667791 - L2 LINE L2 -43 3229 3158 435 249 233 0 chr9 28603934 28604127 -113667317 - MIR SINE MIR -12 250 13 1001 199 197 9 chr9 28605897 28606413 -113665031 + LTR50 LTR ERVL 1 694 -101 571 217 178 11 chr9 28606516 28606696 -113664748 + MIR SINE MIR 47 256 -6 22 0 0 0 chr9 28607677 28607699 -113663745 + AT_rich Low_complexity Low_complexity 1 22 0 310 279 57 33 chr9 28608145 28608267 -113663177 - MIR SINE MIR -65 143 19 529 306 71 6 chr9 28608902 28609085 -113662359 - MIR SINE MIR -61 201 7 540 304 28 11 chr9 28609879 28610060 -113661384 - MIR SINE MIR -6 256 73 391 308 43 47 chr9 28610684 28610895 -113660549 - MLT1J2 LTR MaLR 0 450 241 249 143 54 36 chr9 28610959 28611015 -113660429 + MIR SINE MIR 148 204 -58 338 308 0 0 chr9 28611047 28611151 -113660293 - MIR SINE MIR -74 188 85 1334 250 40 42 chr9 28611157 28611448 -113659996 - MLT1D LTR MaLR -6 499 208 354 23 0 0 chr9 28611448 28611491 -113659953 + (TG)n Simple_repeat Simple_repeat 2 44 0 1334 250 40 42 chr9 28611491 28611695 -113659749 - MLT1D LTR MaLR -297 208 5 240 322 11 0 chr9 28611700 28611787 -113659657 - MIR SINE MIR -174 88 1 29285 111 18 59 chr9 28611947 28618356 -113653088 - L1PA7 LINE L1 -8 6146 16 13731 210 9 36 chr9 28618576 28619763 -113651681 + L1PA15 LINE L1 1679 2896 -3269 1770 160 4 7 chr9 28619763 28620062 -113651382 + AluJb SINE Alu 9 306 0 13731 210 9 36 chr9 28620062 28623000 -113648444 + L1PA15 LINE L1 2896 5689 -476 957 173 30 89 chr9 28623001 28623238 -113648206 + AluJb SINE Alu 81 303 -9 2846 160 6 8 chr9 28623238 28623725 -113647719 + L1PA15 LINE L1 5677 6162 -3 258 303 0 13 chr9 28624213 28624289 -113647155 + Zaphod DNA AcHobo 3954 4028 -3 282 338 86 0 chr9 28624838 28624977 -113646467 + MIR SINE MIR 106 256 -6 201 361 124 0 chr9 28627169 28627266 -113644178 + MIR SINE MIR 34 142 -66 1349 155 49 13 chr9 28627282 28627723 -113643721 - LTR54 LTR ERV1 -21 477 2 608 267 120 22 chr9 28627758 28627983 -113643461 - MIR SINE MIR -14 248 2 241 256 110 12 chr9 28628623 28628705 -113642739 - MIR SINE MIR -102 106 17 469 247 114 11 chr9 28628923 28629149 -113642295 - MIR SINE MIR -5 257 5 1637 127 43 56 chr9 28629318 28629431 -113642013 + MER44D DNA MER2_type 18 131 -2360 2124 124 0 17 chr9 28629431 28629729 -113641715 - AluSx SINE Alu -19 293 1 1637 127 43 56 chr9 28629729 28629939 -113641505 + MER44D DNA MER2_type 131 607 -2 2597 115 5 0 chr9 28630353 28630726 -113640718 + THE1C LTR MaLR 1 375 0 1908 217 82 27 chr9 28630842 28631367 -113640077 + MLT2B3 LTR ERVL 1 554 0 210 381 67 9 chr9 28631451 28631556 -113639888 - L2 LINE L2 -11 3302 3192 2615 162 12 14 chr9 28632431 28632918 -113638526 - L1MB2 LINE L1 -1 6170 5685 377 307 108 22 chr9 28633086 28633317 -113638127 - MIR SINE MIR 0 262 12 232 369 90 0 chr9 28633590 28633701 -113637743 + MIR3 SINE MIR 36 156 -52 204 322 0 0 chr9 28633756 28633815 -113637629 + MIR SINE MIR 85 143 -119 265 264 138 23 chr9 28634012 28634099 -113637345 - MER5A DNA MER1_type -2 187 91 2922 155 43 6 chr9 28634220 28634750 -113636694 + L1MB3 LINE L1 5625 6174 -9 2207 96 81 26 chr9 28635047 28635392 -113636052 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr9 28635731 28635759 -113635685 + AT_rich Low_complexity Low_complexity 1 28 0 2016 152 39 51 chr9 28636014 28636346 -113635098 - MSTB1 LTR MaLR -4 428 101 2240 143 125 0 chr9 28636346 28636746 -113634698 + LTR47A LTR ERVL 1 450 -2 2016 152 39 51 chr9 28636746 28636846 -113634598 - MSTB1 LTR MaLR -331 101 1 688 233 84 5 chr9 28637872 28637918 -113633526 + MER58A DNA MER1_type 6 47 -2373 257 0 30 0 chr9 28637918 28637951 -113633493 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 688 233 84 5 chr9 28637951 28638106 -113633338 + MER58A DNA MER1_type 47 223 -1 933 208 52 119 chr9 28638364 28638749 -113632695 - MLT1A1 LTR MaLR -2 363 5 1220 254 92 30 chr9 28638829 28639000 -113632444 - LTR16B LTR ERVL 0 464 305 1695 184 43 0 chr9 28639000 28639162 -113632282 - AluJb SINE Alu -18 294 113 207 0 0 0 chr9 28639162 28639185 -113632259 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1695 184 43 0 chr9 28639185 28639304 -113632140 - AluJb SINE Alu -199 113 1 1220 254 92 30 chr9 28639304 28639569 -113631875 - LTR16B LTR ERVL -159 305 1 216 263 35 0 chr9 28639686 28639743 -113631701 - MIR3 SINE MIR -25 183 125 220 340 206 25 chr9 28640474 28640833 -113630611 - L2 LINE L2 -965 2349 1926 213 180 0 0 chr9 28641951 28642001 -113629443 + CT-rich Low_complexity Low_complexity 1 50 0 1520 207 98 15 chr9 28642999 28643409 -113628035 + MLT1D LTR MaLR 62 505 0 338 296 59 62 chr9 28643651 28643852 -113627592 - MIR SINE MIR -36 226 30 384 155 0 0 chr9 28644320 28644391 -113627053 + GA-rich Low_complexity Low_complexity 1 71 0 205 191 24 0 chr9 28645223 28645265 -113626179 + (ATG)n Simple_repeat Simple_repeat 2 44 0 697 255 6 12 chr9 28645315 28645476 -113625968 - MIR SINE MIR -73 189 30 187 193 313 12 chr9 28645517 28645600 -113625844 - MIR SINE MIR -76 186 79 215 344 0 0 chr9 28645853 28645917 -113625527 + L2 LINE L2 3136 3199 -73 2569 128 7 17 chr9 28645917 28646339 -113625105 + MSTA LTR MaLR 11 428 0 260 328 15 0 chr9 28646339 28646406 -113625038 + L2 LINE L2 3237 3304 -9 256 288 29 22 chr9 28647037 28647176 -113624268 + L1ME4a LINE L1 5308 5447 -2361 442 91 0 15 chr9 28647193 28647259 -113624185 + AluSc SINE Alu 233 297 -12 1084 219 48 4 chr9 28647260 28647529 -113623915 - L1ME1 LINE L1 -5 6161 5881 736 238 115 43 chr9 28647533 28647975 -113623469 + L1ME4a LINE L1 5446 5919 -202 228 206 0 0 chr9 28648045 28648108 -113623336 + L1ME4a LINE L1 6056 6118 -3 1581 152 80 4 chr9 28648135 28648411 -113623033 - AluJo SINE Alu -15 297 1 186 287 156 16 chr9 28648511 28648633 -113622811 - L2 LINE L2 -19 3294 3156 286 263 203 8 chr9 28648675 28648808 -113622636 + MIR SINE MIR 98 256 -6 183 94 62 0 chr9 28650148 28650180 -113621264 - L3 LINE CR1 -155 1422 1389 2156 106 0 52 chr9 28651029 28651358 -113620086 - AluSx SINE Alu 0 312 1 574 328 65 34 chr9 28652209 28652621 -113618823 - MLT1K LTR MaLR -25 563 139 240 240 20 0 chr9 28652596 28652646 -113618798 - MLT1K LTR MaLR -355 233 183 * 7546 106 26 18 chr9 28652699 28652789 -113618655 - HSMAR2 DNA Mariner -94 1208 1120 2211 135 0 19 chr9 28652789 28653107 -113618337 - AluSx SINE Alu 0 312 1 7546 106 26 18 chr9 28653107 28654214 -113617230 - HSMAR2 DNA Mariner -182 1120 1 1486 163 25 4 chr9 28654462 28654738 -113616706 + L1MB3 LINE L1 5892 6173 -10 474 309 108 10 chr9 28655965 28656169 -113615275 - MIR SINE MIR -7 255 32 299 231 253 0 chr9 28656505 28656596 -113614848 + MIR SINE MIR 44 157 -105 565 220 51 19 chr9 28656610 28656824 -113614620 - L1ME LINE L1 -680 5482 5262 2055 139 3 3 chr9 28656825 28657134 -113614310 + AluSg SINE Alu 1 309 -1 2624 216 6 40 chr9 28657148 28657848 -113613596 + L1ME1 LINE L1 5486 6161 -5 1604 190 28 21 chr9 28658033 28658322 -113613122 + AluJo SINE Alu 1 291 -21 270 169 34 17 chr9 28658421 28658480 -113612964 + LTR67 LTR ERVL 478 537 -20 396 307 109 50 chr9 28658612 28658796 -113612648 - MIR SINE MIR -5 257 54 1973 102 84 3 chr9 28658796 28659080 -113612364 + AluSg SINE Alu 1 307 -3 396 307 109 50 chr9 28659080 28659133 -113612311 - MIR SINE MIR -208 54 6 7402 37 0 3 chr9 28660052 28661364 -113610080 + L1PA5 LINE L1 4840 6148 -6 2391 180 11 17 chr9 28661413 28661875 -113609569 + MER44D DNA MER2_type 7 520 -85 6342 88 11 1 chr9 28661882 28663184 -113608260 + L1PA14 LINE L1 4833 6159 -2 2106 107 0 7 chr9 28663507 28663849 -113607595 - AluSc SINE Alu 0 340 1 393 298 153 37 chr9 28664072 28664424 -113607020 - L2 LINE L2 0 3313 2921 297 75 0 0 chr9 28665863 28665903 -113605541 + (CA)n Simple_repeat Simple_repeat 2 41 0 226 328 107 16 chr9 28666252 28666374 -113605070 + MIR3 SINE MIR 67 199 -9 2208 112 0 3 chr9 28666523 28666817 -113604627 - AluSg SINE Alu -17 293 1 2316 118 82 43 chr9 28668866 28669282 -113602162 + MSTB1 LTR MaLR 1 432 0 412 258 41 53 chr9 28669284 28669528 -113601916 + L1MC5 LINE L1 7336 7576 -385 232 300 82 29 chr9 28669617 28669860 -113601584 + L1MC5 LINE L1 7701 7956 -5 2378 104 0 9 chr9 28669966 28670282 -113601162 + AluSq SINE Alu 1 313 0 199 277 0 0 chr9 28670818 28670865 -113600579 + MIR SINE MIR 216 262 0 371 285 70 65 chr9 28671306 28671506 -113599938 - MIR3 SINE MIR -5 203 3 217 191 21 21 chr9 28671697 28671744 -113599700 - L2 LINE L2 -3 3310 3264 1921 161 43 0 chr9 28671854 28672153 -113599291 + AluJb SINE Alu 1 312 0 224 109 0 43 chr9 28673208 28673254 -113598190 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 2248 84 7 23 chr9 28673460 28673768 -113597676 - AluSp SINE Alu -6 307 5 319 320 112 34 chr9 28674604 28674810 -113596634 - L1 LINE L1 -2238 3908 3687 2120 231 49 38 chr9 28675569 28675994 -113595450 + L1ME3 LINE L1 5455 5893 -269 5935 103 15 5 chr9 28675994 28676820 -113594624 + L1PA14 LINE L1 4339 5155 -1006 2105 104 34 10 chr9 28676820 28677117 -113594327 + AluSx SINE Alu 1 304 -8 5935 103 15 5 chr9 28677117 28678098 -113593346 + L1PA14 LINE L1 5155 6149 -12 2120 231 49 38 chr9 28678098 28678366 -113593078 + L1ME3 LINE L1 5893 6156 -6 2757 132 27 8 chr9 28678661 28679146 -113592298 - L1MA5 LINE L1 0 6300 5807 2165 80 31 0 chr9 28679348 28679634 -113591810 - AluY SINE Alu -5 306 12 185 284 75 0 chr9 28679637 28679704 -113591740 - MIR SINE MIR -114 148 77 234 0 0 0 chr9 28679863 28679889 -113591555 + (T)n Simple_repeat Simple_repeat 1 26 0 877 104 30 0 chr9 28681282 28681417 -113590027 - L1PA13 LINE L1 -5 6158 6020 1103 211 35 107 chr9 28681497 28681665 -113589779 + MLT1B LTR MaLR 6 185 -205 2313 99 7 0 chr9 28681665 28681958 -113589486 + AluSc SINE Alu 1 295 -14 1103 211 35 107 chr9 28681958 28682192 -113589252 + MLT1B LTR MaLR 185 379 -11 1168 153 0 0 chr9 28684520 28684697 -113586747 - AluSg/x SINE Alu -3 309 133 21 0 0 0 chr9 28684926 28684947 -113586497 + AT_rich Low_complexity Low_complexity 1 21 0 2116 219 59 49 chr9 28685022 28685683 -113585761 + L1ME2 LINE L1 5009 5701 -463 2157 96 11 4 chr9 28685683 28685991 -113585453 + AluSx SINE Alu 1 310 0 2116 219 59 49 chr9 28685991 28686395 -113585049 + L1ME2 LINE L1 5701 6100 -64 1771 177 7 3 chr9 28686399 28686699 -113584745 + AluJo SINE Alu 4 304 -8 225 235 45 45 chr9 28686779 28686911 -113584533 + L1MC4 LINE L1 7836 7967 -75 26 0 0 0 chr9 28686983 28687009 -113584435 + AT_rich Low_complexity Low_complexity 1 26 0 249 257 62 88 chr9 28687153 28687266 -113584178 + L2 LINE L2 3158 3267 -5 1353 161 107 76 chr9 28687288 28687579 -113583865 - AluJo SINE Alu -12 300 1 43 20 0 0 chr9 28687822 28687872 -113583572 + AT_rich Low_complexity Low_complexity 1 50 0 261 288 38 25 chr9 28687888 28687968 -113583476 - MER5B DNA MER1_type -8 170 90 223 347 0 27 chr9 28687902 28687977 -113583467 + MER5A DNA MER1_type 35 107 -82 * 399 266 227 30 chr9 28688550 28688753 -113582691 + MIR SINE MIR 20 262 0 2418 51 51 0 chr9 28688809 28689105 -113582339 + AluY SINE Alu 1 311 0 2051 155 79 25 chr9 28689737 28690143 -113581301 - MSTA LTR MaLR 0 428 1 25 31 0 0 chr9 28691207 28691239 -113580205 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 28691404 28691425 -113580019 + AT_rich Low_complexity Low_complexity 1 21 0 1422 279 116 26 chr9 28692017 28692561 -113578883 + MLT1E LTR MaLR 1 593 0 316 236 150 14 chr9 28693083 28693223 -113578221 - L1ME3A LINE L1 -3 6167 6009 1475 271 81 2 chr9 28693229 28693697 -113577747 - L1ME3A LINE L1 -278 5892 5388 207 103 0 26 chr9 28693783 28693822 -113577622 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 284 305 59 17 chr9 28693831 28693949 -113577495 + L1ME3A LINE L1 6026 6148 -22 4276 143 32 16 chr9 28693962 28695220 -113576224 + L1PA16 LINE L1 4698 5963 -203 2152 111 44 0 chr9 28695233 28695531 -113575913 + AluSx SINE Alu 2 312 0 1390 274 44 85 chr9 28695532 28696402 -113575042 + L1ME LINE L1 2 835 -5235 1701 197 0 7 chr9 28696412 28696696 -113574748 + AluJo SINE Alu 1 282 -30 326 128 60 0 chr9 28696735 28696852 -113574592 + (TA)n Simple_repeat Simple_repeat 1 124 0 601 257 60 32 chr9 28696889 28697138 -113574306 + L1ME LINE L1 837 1092 -4988 656 221 41 0 chr9 28697176 28697348 -113574096 + L1ME LINE L1 1198 1376 -4704 1570 223 75 44 chr9 28697371 28697789 -113573655 + L1MEc LINE L1 1007 1449 -5376 2349 91 0 0 chr9 28697789 28698085 -113573359 + AluSq SINE Alu 1 296 -17 1570 223 75 44 chr9 28698085 28698236 -113573208 + L1MEc LINE L1 1449 1594 -5231 225 161 48 24 chr9 28698270 28698394 -113573050 + (TA)n Simple_repeat Simple_repeat 1 127 0 377 232 77 23 chr9 28698425 28698574 -113572870 + L1MEc LINE L1 1517 1766 -4878 3039 181 76 5 chr9 28698708 28699365 -113572079 + L1MB7 LINE L1 5472 6175 -9 299 209 57 38 chr9 28699472 28699577 -113571867 + L1MEc LINE L1 2646 2752 -3892 1515 147 162 0 chr9 28699577 28699891 -113571553 - MER47A DNA MER2_type 0 366 2 225 222 42 0 chr9 28699891 28699963 -113571481 + L1MEc LINE L1 2748 2822 -3822 1286 221 38 0 chr9 28700012 28700275 -113571169 + AluSx SINE Alu 1 273 -39 184 29 29 29 chr9 28700284 28700318 -113571126 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1775 143 4 4 chr9 28700318 28700591 -113570853 + AluSq SINE Alu 1 273 -40 615 231 54 0 chr9 28700591 28700738 -113570706 + MLT1E1 LTR MaLR 491 645 -9 1183 179 23 88 chr9 28700747 28700872 -113570572 + L1MEc LINE L1 3055 3187 -3457 2454 70 0 0 chr9 28700872 28701172 -113570272 - AluY SINE Alu -11 300 1 1183 179 23 88 chr9 28701172 28701388 -113570056 + L1MEc LINE L1 3187 3372 -3272 2338 71 0 0 chr9 28701388 28701832 -113569612 + AluY SINE Alu 1 444 0 1183 179 23 88 chr9 28701832 28701874 -113569570 + L1MEc LINE L1 3372 3415 -3229 2089 132 0 0 chr9 28702168 28702463 -113568981 - AluSx SINE Alu -17 295 1 2553 52 0 3 chr9 28702842 28703147 -113568297 - AluY SINE Alu -7 304 1 1011 152 0 0 chr9 28704130 28704281 -113567163 - AluJb SINE Alu -15 297 147 2208 121 0 3 chr9 28704717 28705031 -113566413 + AluSp SINE Alu 1 313 0 1869 72 0 4 chr9 28705319 28705554 -113565890 - AluY SINE Alu -77 234 1 1450 161 84 18 chr9 28705615 28705831 -113565613 + AluJo SINE Alu 3 242 -70 2226 201 116 72 chr9 28705831 28706622 -113564822 - LTR1B LTR ERV1 0 826 1 1450 161 84 18 chr9 28706622 28706679 -113564765 + AluJo SINE Alu 242 294 -18 21 36 0 0 chr9 28706872 28706900 -113564544 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 28707104 28707126 -113564318 + AT_rich Low_complexity Low_complexity 1 22 0 1939 123 9 56 chr9 28707409 28707468 -113563976 - MER47A DNA MER2_type -1984 339 279 2402 78 0 19 chr9 28707468 28707777 -113563667 - AluSq SINE Alu -10 303 1 1939 123 9 56 chr9 28707777 28708059 -113563385 - MER47A DNA MER2_type -2044 279 14 26 0 0 0 chr9 28708094 28708120 -113563324 + AT_rich Low_complexity Low_complexity 1 26 0 20445 83 1 6 chr9 28708348 28711089 -113560355 + HERV9 LTR ERV1 2217 4944 -3455 2282 175 117 67 chr9 28711090 28711929 -113559515 + HERV9 LTR ERV1 840 1720 -5176 * 3388 85 3 23 chr9 28711923 28712508 -113558936 + HERV9 LTR ERV1 7756 8399 0 5488 77 98 1 chr9 28712508 28713261 -113558183 + LTR12 LTR ERV1 1 826 0 369 349 64 43 chr9 28713740 28714067 -113557377 + HAL1b LINE L1 18 351 -997 315 288 107 23 chr9 28714267 28714444 -113557000 + HAL1 LINE L1 6 197 -2310 2516 179 95 81 chr9 28714485 28715166 -113556278 - LTR8 LTR ERV1 0 691 1 293 253 20 20 chr9 28715310 28715409 -113556035 + HAL1 LINE L1 468 566 -1941 485 222 105 77 chr9 28715451 28715536 -113555908 + HAL1 LINE L1 760 841 -1666 1761 167 3 16 chr9 28715536 28715848 -113555596 + AluJb SINE Alu 1 308 -4 485 222 105 77 chr9 28715848 28716010 -113555434 + HAL1 LINE L1 841 1014 -1493 1318 238 38 108 chr9 28716013 28716615 -113554829 - REP3 LTR ERV -2 560 1 509 230 97 50 chr9 28716630 28716930 -113554514 + HAL1 LINE L1 1026 1339 -1168 377 260 65 8 chr9 28717039 28717162 -113554282 + HAL1 LINE L1 1363 1492 -1015 * 1109 15 0 0 chr9 28717157 28717287 -113554157 + L1P LINE L1 2791 2920 -3226 3791 60 12 6 chr9 28717388 28717900 -113553544 + L1PA5 LINE L1 4814 5329 -812 3572 39 0 2 chr9 28717900 28718334 -113553110 + L1PA5 LINE L1 5721 6154 0 1350 233 142 87 chr9 28718335 28719175 -113552269 + HAL1 LINE L1 1485 2370 -137 242 292 292 14 chr9 28719436 28719580 -113551864 - MIR3 SINE MIR -6 202 19 786 156 0 15 chr9 28720256 28720391 -113551053 + FLAM_A SINE Alu 1 133 0 2195 75 14 14 chr9 28720622 28720916 -113550528 - AluY SINE Alu -17 294 1 823 10 0 20 chr9 28724049 28724149 -113547295 - L1PA3 LINE L1 -2 6153 6056 2328 98 3 0 chr9 28724798 28725095 -113546349 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr9 28725204 28725232 -113546212 + AT_rich Low_complexity Low_complexity 1 28 0 396 201 58 71 chr9 28725319 28725473 -113545971 - L1MC5 LINE L1 -608 7353 7202 237 244 70 0 chr9 28725523 28725609 -113545835 - HAL1 LINE L1 -1028 1479 1388 665 215 226 26 chr9 28725725 28725990 -113545454 + L2 LINE L2 2988 3305 -8 579 301 90 47 chr9 28725992 28726131 -113545313 - HAL1 LINE L1 -1276 1231 1100 2100 98 0 0 chr9 28726131 28726396 -113545048 - AluSg SINE Alu -45 265 1 579 301 90 47 chr9 28726396 28726621 -113544823 - HAL1 LINE L1 -1407 1100 851 2383 91 0 0 chr9 28726859 28727168 -113544276 + AluSg1 SINE Alu 1 309 0 2391 90 3 0 chr9 28727408 28727709 -113543735 - AluSp SINE Alu -11 302 1 21 71 0 0 chr9 28727753 28727795 -113543649 + AT_rich Low_complexity Low_complexity 1 42 0 2704 39 0 0 chr9 28727925 28728236 -113543208 - AluY SINE Alu 0 311 1 280 233 8 54 chr9 28728241 28728370 -113543074 - L1MC/D LINE L1 -2556 5439 5317 329 267 0 0 chr9 28728605 28728680 -113542764 - HAL1 LINE L1 -2422 85 11 2219 88 3 10 chr9 28728955 28729252 -113542192 + AluY SINE Alu 1 295 -16 2327 75 7 0 chr9 28730564 28730858 -113540586 - AluY SINE Alu -15 296 1 35 41 0 0 chr9 28732743 28732792 -113538652 + AT_rich Low_complexity Low_complexity 1 49 0 515 220 0 8 chr9 28732792 28732910 -113538534 - AluJb SINE Alu -22 290 174 2145 103 3 3 chr9 28733049 28733340 -113538104 + AluSx SINE Alu 14 304 -8 249 328 138 9 chr9 28733572 28733688 -113537756 + L3 LINE CR1 199 329 -1248 624 229 170 31 chr9 28733700 28734058 -113537386 - L2 LINE L2 -280 3033 2632 457 225 183 100 chr9 28734062 28734513 -113536931 - L2 LINE L2 -831 2483 1920 422 311 139 0 chr9 28734516 28734696 -113536748 - L2 LINE L2 -1648 1666 1462 416 297 34 14 chr9 28734822 28734970 -113536474 + L3 LINE CR1 1250 1400 -177 1057 222 29 25 chr9 28735039 28735282 -113536162 - MIR SINE MIR -18 244 1 4187 153 101 7 chr9 28735466 28736376 -113535068 + L1MC2 LINE L1 5188 6181 -163 532 93 23 12 chr9 28736390 28736476 -113534968 + L1MC2 LINE L1 6248 6334 -10 428 215 16 58 chr9 28736864 28736985 -113534459 - AluJb SINE Alu -68 244 129 479 322 159 21 chr9 28737395 28737684 -113533760 - L3 LINE CR1 -7 1570 1242 2020 142 30 0 chr9 28738233 28738536 -113532908 + AluSx SINE Alu 1 312 0 2455 78 0 3 chr9 28739424 28739732 -113531712 + AluY SINE Alu 1 307 -4 1188 102 12 0 chr9 28739732 28739899 -113531545 + AluY SINE Alu 133 301 -10 23 0 0 0 chr9 28740526 28740549 -113530895 + AT_rich Low_complexity Low_complexity 1 23 0 2240 75 4 0 chr9 28741393 28741694 -113529750 + AluY SINE Alu 1 302 0 1016 268 93 34 chr9 28743325 28743949 -113527495 + L1MC4 LINE L1 7377 8037 -5 198 0 0 0 chr9 28744654 28744676 -113526768 + (A)n Simple_repeat Simple_repeat 1 22 0 1318 189 125 11 chr9 28744681 28744945 -113526499 - AluJb SINE Alu -18 294 1 2225 98 7 3 chr9 28745815 28746111 -113525333 + AluSp SINE Alu 1 297 -16 531 194 86 29 chr9 28746245 28746384 -113525060 - MIR SINE MIR -10 252 106 2208 127 0 0 chr9 28746414 28746713 -113524731 - AluSx SINE Alu -7 305 7 270 191 88 0 chr9 28746888 28746956 -113524488 + L1MC4a LINE L1 5885 5958 -1850 963 230 101 83 chr9 28747305 28747471 -113523973 - MLT1D LTR MaLR 0 505 343 1943 153 52 18 chr9 28747471 28747797 -113523647 + MER1B DNA MER1_type 1 337 0 963 230 101 83 chr9 28747797 28748126 -113523318 - MLT1D LTR MaLR -162 343 1 922 189 111 45 chr9 28748175 28748508 -113522936 + Charlie4a DNA MER1_type 148 502 -6 2281 187 47 18 chr9 28748708 28749199 -113522245 + MLT1D LTR MaLR 1 505 0 386 238 54 82 chr9 28749220 28749573 -113521871 + L1MC5 LINE L1 7339 7681 -280 25 31 0 0 chr9 28749585 28749617 -113521827 + AT_rich Low_complexity Low_complexity 1 32 0 315 208 40 32 chr9 28749646 28749771 -113521673 + L1MC5 LINE L1 7806 7931 -30 180 0 0 0 chr9 28750612 28750632 -113520812 + (T)n Simple_repeat Simple_repeat 1 20 0 213 154 0 0 chr9 28751114 28751153 -113520291 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr9 28751160 28751184 -113520260 + (TG)n Simple_repeat Simple_repeat 2 25 0 2046 128 0 10 chr9 28751193 28751489 -113519955 - AluSx SINE Alu -19 293 1 2020 144 3 0 chr9 28751868 28752167 -113519277 + AluSx SINE Alu 1 300 -12 1934 121 36 0 chr9 28752216 28752526 -113518918 + AluSx SINE Alu 3 312 0 221 57 29 0 chr9 28753112 28753147 -113518297 + (TA)n Simple_repeat Simple_repeat 2 37 0 757 211 0 0 chr9 28753149 28753291 -113518153 - FRAM SINE Alu -31 145 4 1369 186 74 0 chr9 28753556 28753825 -113517619 + AluJb SINE Alu 5 293 -19 2503 78 0 0 chr9 28754501 28754807 -113516637 + AluY SINE Alu 3 308 -3 1698 162 17 17 chr9 28754807 28755166 -113516278 - L1MA4 LINE L1 -3 6297 5939 1778 142 0 4 chr9 28755710 28755963 -113515481 + AluSx SINE Alu 35 286 -26 269 91 0 0 chr9 28755964 28756008 -113515436 + Alu SINE Alu 257 300 -2 724 132 9 0 chr9 28756410 28756524 -113514920 + Tigger3(Golem) DNA MER2_type 2808 2922 -107 1694 117 51 48 chr9 28756531 28756673 -113514771 + MER46B DNA MER2_type 10 30 -2701 1709 161 39 0 chr9 28756673 28756952 -113514492 + AluJo SINE Alu 1 290 -22 1694 117 51 48 chr9 28756952 28757160 -113514284 + MER46B DNA MER2_type 30 236 0 490 224 37 0 chr9 28757160 28757264 -113514180 + Tigger3(Golem) DNA MER2_type 2931 3038 0 29 0 0 0 chr9 28757685 28757714 -113513730 + AT_rich Low_complexity Low_complexity 1 29 0 773 225 6 0 chr9 28758469 28758629 -113512815 + AluJb SINE Alu 134 294 -18 1981 218 62 46 chr9 28759289 28759834 -113511610 + MLT2B3 LTR ERVL 1 554 0 1984 160 13 0 chr9 28760478 28760778 -113510666 - AluSx SINE Alu -8 304 1 423 228 0 0 chr9 28760865 28760944 -113510500 + AluJo/FLAM SINE Alu 37 115 -197 * 773 190 22 0 chr9 28760937 28761074 -113510370 - AluJo SINE Alu -170 142 3 1957 150 45 31 chr9 28761129 28761488 -113509956 + THE1B LTR MaLR 1 364 0 10116 92 54 10 chr9 28761488 28763001 -113508443 + THE1B-int LTR MaLR 1 1580 0 756 135 0 0 chr9 28763001 28763112 -113508332 + THE1B LTR MaLR 1 111 -253 964 134 87 6 chr9 28763139 28763311 -113508133 + THE1B LTR MaLR 179 364 0 2273 73 3 7 chr9 28764877 28765177 -113506267 - AluSg SINE Alu -11 299 1 203 286 0 14 chr9 28765199 28765269 -113506175 + (TA)n Simple_repeat Simple_repeat 1 69 0 22 35 0 0 chr9 28766401 28766430 -113505014 + AT_rich Low_complexity Low_complexity 1 29 0 2270 94 7 0 chr9 28766736 28767033 -113504411 + AluSg SINE Alu 2 300 -10 499 359 65 8 chr9 28767818 28768066 -113503378 + L2 LINE L2 2511 2772 -542 213 292 62 0 chr9 28768256 28768321 -113503123 + L2 LINE L2 3006 3074 -198 1647 151 185 116 chr9 28768425 28768937 -113502507 + L1MB8 LINE L1 5508 6072 -106 2289 88 3 3 chr9 28768937 28769245 -113502199 + AluSq SINE Alu 1 308 -5 1647 151 185 116 chr9 28769245 28769354 -113502090 + L1MB8 LINE L1 6072 6172 -6 2221 85 0 44 chr9 28769374 28769691 -113501753 + AluY SINE Alu 1 303 -8 2155 130 0 3 chr9 28769889 28770196 -113501248 + AluSx SINE Alu 1 306 -6 577 296 190 25 chr9 28770221 28770465 -113500979 + L1MC/D LINE L1 3424 3626 -2520 2517 53 0 0 chr9 28770465 28770768 -113500676 + AluY SINE Alu 1 303 -8 577 296 190 25 chr9 28770768 28770966 -113500478 + L1MC/D LINE L1 3626 3939 -2207 365 263 82 63 chr9 28770989 28771305 -113500139 + L1MC/D LINE L1 5315 5636 -2172 434 301 56 7 chr9 28771705 28771854 -113499590 + MIR SINE MIR 2 154 -60 24 0 0 0 chr9 28771971 28771995 -113499449 + AT_rich Low_complexity Low_complexity 1 24 0 319 323 101 45 chr9 28772099 28772477 -113498967 + L1M2 LINE L1 345 743 -6106 2483 74 3 0 chr9 28773625 28773935 -113497509 - AluSp SINE Alu -2 311 1 1276 241 29 21 chr9 28774018 28774114 -113497330 + LTR26 LTR ERV1 181 275 -328 3677 139 81 0 chr9 28774114 28774710 -113496734 + LTR9B LTR ERV1 1 644 0 1276 241 29 21 chr9 28774710 28775033 -113496411 + LTR26 LTR ERV1 275 603 0 815 112 77 7 chr9 28775036 28775179 -113496265 + MLT1B LTR MaLR 22 174 -216 2356 68 14 14 chr9 28775183 28775479 -113495965 + AluY SINE Alu 1 296 -15 1218 205 9 0 chr9 28775479 28775703 -113495741 + 7SLRNA srpRNA srpRNA 1 226 -94 764 101 0 2 chr9 28775704 28775952 -113495492 + AluSx SINE Alu 1 299 -13 516 202 0 0 chr9 28775952 28776046 -113495398 + 7SLRNA srpRNA srpRNA 217 310 -10 1162 152 25 0 chr9 28776067 28776265 -113495179 + MLT1B LTR MaLR 188 390 0 314 248 29 19 chr9 28776510 28776615 -113494829 - L2 LINE L2 -44 3269 3164 319 238 169 44 chr9 28776653 28776758 -113494686 + L2 LINE L2 3096 3229 -84 2308 108 3 0 chr9 28776758 28777065 -113494379 - AluSg SINE Alu -2 308 1 319 238 169 44 chr9 28777065 28777119 -113494325 + L2 LINE L2 3229 3275 -38 1438 155 52 48 chr9 28777119 28777390 -113494054 + AluJb SINE Alu 1 272 -40 258 146 18 18 chr9 28777655 28777710 -113493734 - MER116 DNA Mariner 0 80 26 237 167 0 0 chr9 28777739 28777781 -113493663 - MER116 DNA Mariner -38 42 1 1819 109 91 0 chr9 28778247 28778522 -113492922 - AluSx SINE Alu -8 304 5 246 111 67 0 chr9 28778531 28778576 -113492868 + MLT1K LTR MaLR 541 588 0 227 200 0 22 chr9 28778577 28778622 -113492822 + (CATAG)n Simple_repeat Simple_repeat 1 44 0 253 330 127 0 chr9 28778857 28778975 -113492469 + L2 LINE L2 3172 3304 -9 392 255 87 19 chr9 28779028 28779189 -113492255 + MLT1H LTR MaLR 1 172 -377 355 277 207 28 chr9 28779907 28780120 -113491324 - MIR SINE MIR -10 252 2 226 211 28 14 chr9 28780324 28780395 -113491049 - L1 LINE L1 -1197 4949 4878 1635 214 180 20 chr9 28780931 28781441 -113490003 + MLT1E LTR MaLR 1 592 -1 265 252 171 37 chr9 28781641 28781887 -113489557 + L1MC4 LINE L1 7689 7967 -75 1900 166 3 19 chr9 28781915 28782229 -113489215 - AluJo SINE Alu -3 309 1 23 54 0 0 chr9 28782229 28782266 -113489178 + AT_rich Low_complexity Low_complexity 1 37 0 1477 40 0 0 chr9 28782497 28782673 -113488771 + AluY SINE Alu 123 298 -13 227 254 0 0 chr9 28783310 28783365 -113488079 + L1ME4a LINE L1 5990 6044 -77 181 227 0 106 chr9 28783724 28783790 -113487654 + MIR SINE MIR 21 79 -129 55 40 0 0 chr9 28784791 28784867 -113486577 + AT_rich Low_complexity Low_complexity 1 76 0 2365 108 7 0 chr9 28786098 28786405 -113485039 - AluSq SINE Alu -4 309 1 368 258 129 83 chr9 28786466 28786815 -113484629 + L1MC5 LINE L1 7263 7634 -408 2246 62 36 36 chr9 28786938 28787246 -113484198 + AluY SINE Alu 3 310 -1 2252 105 3 0 chr9 28787839 28788143 -113483301 - AluY SINE Alu -6 305 1 1972 112 3 37 chr9 28788155 28788451 -113482993 - AluSx SINE Alu -26 286 1 23 0 0 0 chr9 28788660 28788683 -113482761 + AT_rich Low_complexity Low_complexity 1 23 0 2364 90 0 10 chr9 28789291 28789601 -113481843 - AluSx SINE Alu -5 307 1 29 47 0 0 chr9 28790265 28790308 -113481136 + AT_rich Low_complexity Low_complexity 1 43 0 743 168 168 7 chr9 28790354 28790503 -113480941 - AluJb SINE Alu -6 306 134 22 35 0 0 chr9 28790504 28790533 -113480911 + AT_rich Low_complexity Low_complexity 1 29 0 598 99 0 0 chr9 28790731 28790822 -113480622 - L1PA10 LINE L1 0 6168 6078 2295 106 0 0 chr9 28790836 28791128 -113480316 - AluSg SINE Alu -18 292 1 964 97 8 15 chr9 28791128 28791262 -113480182 - AluSq/x SINE Alu -176 136 4 355 305 122 18 chr9 28791942 28792229 -113479215 - L2 LINE L2 -357 2957 2577 555 282 47 41 chr9 28792385 28792555 -113478889 - MIR SINE MIR -89 173 3 670 204 0 15 chr9 28792622 28792754 -113478690 + FLAM_A SINE Alu 4 133 0 532 247 37 56 chr9 28793225 28793387 -113478057 + MER5B DNA MER1_type 1 159 -19 264 143 20 20 chr9 28793759 28793808 -113477636 + MIR SINE MIR 193 241 -21 206 233 14 27 chr9 28794234 28794307 -113477137 + A-rich Low_complexity Low_complexity 3 74 0 193 277 270 20 chr9 28794310 28794458 -113476986 - MIR SINE MIR -13 249 65 340 253 13 97 chr9 28794548 28794609 -113476835 + MER5B DNA MER1_type 1 66 -112 2252 105 3 0 chr9 28794609 28794904 -113476540 + AluSp SINE Alu 2 297 -16 340 253 13 97 chr9 28794904 28794996 -113476448 + MER5B DNA MER1_type 66 141 -37 286 315 0 45 chr9 28794988 28795099 -113476345 + MER5A DNA MER1_type 82 187 -2 * 209 327 45 9 chr9 28795210 28795320 -113476124 - MIR SINE MIR 0 262 149 590 275 19 6 chr9 28796365 28796525 -113474919 - MIR SINE MIR -99 163 2 981 289 45 48 chr9 28797543 28798152 -113473292 + L2 LINE L2 2395 3049 -264 354 230 18 62 chr9 28798229 28798342 -113473102 + MLT1J2 LTR MaLR 64 171 -279 3489 208 93 37 chr9 28798371 28799431 -113472013 - Charlie1a DNA MER1_type -335 1120 1 1160 155 6 0 chr9 28799554 28799728 -113471716 - AluJb SINE Alu -15 297 123 1794 175 0 13 chr9 28801009 28801318 -113470126 - AluJo SINE Alu -7 305 1 31 44 0 0 chr9 28803760 28803805 -113467639 + AT_rich Low_complexity Low_complexity 1 45 0 2035 149 0 7 chr9 28803997 28804306 -113467138 - AluSx SINE Alu -5 307 1 460 283 92 3 chr9 28805439 28805608 -113465836 + MIR SINE MIR 8 189 -19 1811 174 0 13 chr9 28805800 28806110 -113465334 + AluJo SINE Alu 2 307 -5 1101 204 155 15 chr9 28806113 28806377 -113465067 + AluJb SINE Alu 2 302 0 321 256 12 12 chr9 28806763 28806849 -113464595 + MLT1I LTR MaLR 36 121 -288 2347 64 7 3 chr9 28806990 28807286 -113464158 - AluY SINE Alu -14 297 1 225 322 35 23 chr9 28807356 28807443 -113464001 + MLT1I LTR MaLR 243 330 -79 2102 136 0 3 chr9 28807465 28807766 -113463678 - AluSq SINE Alu -13 300 1 610 250 65 35 chr9 28807836 28808036 -113463408 + L1MC4a LINE L1 6704 6909 -899 613 225 48 43 chr9 28808061 28808292 -113463152 + L1MC5 LINE L1 6997 7228 -733 512 227 131 48 chr9 28808316 28808638 -113462806 + L1MC5 LINE L1 7226 7512 -449 674 130 0 0 chr9 28808643 28808743 -113462701 + AluS SINE Alu 1 100 -213 1655 97 4 13 chr9 28808743 28809005 -113462439 + AluSq SINE Alu 58 317 0 258 198 206 93 chr9 28809012 28809097 -113462347 + L1MC5 LINE L1 7546 7620 -341 216 0 0 0 chr9 28809097 28809121 -113462323 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 258 198 206 93 chr9 28809121 28809180 -113462264 + L1MC5 LINE L1 7620 7671 -290 1425 190 75 16 chr9 28809180 28809501 -113461943 + MER58B DNA MER1_type 2 341 0 258 198 206 93 chr9 28809501 28809602 -113461842 + L1MC5 LINE L1 7671 7820 -141 1867 105 6 71 chr9 28809736 28809870 -113461574 + AluSx SINE Alu 1 142 -170 2279 106 0 0 chr9 28809870 28810171 -113461273 + AluSc SINE Alu 1 301 -8 1867 105 6 71 chr9 28810171 28810361 -113461083 + AluSx SINE Alu 142 304 -8 25 0 0 0 chr9 28810361 28810386 -113461058 + AT_rich Low_complexity Low_complexity 1 25 0 2462 72 0 3 chr9 28810389 28810696 -113460748 + AluY SINE Alu 1 306 -5 1882 180 0 0 chr9 28810696 28810990 -113460454 - AluJo SINE Alu -17 295 2 2037 122 10 3 chr9 28811358 28811661 -113459783 - AluSx SINE Alu -7 305 1 747 110 63 0 chr9 28812572 28812699 -113458745 + MER30 DNA MER1_type 1 135 -95 35 24 0 0 chr9 28812729 28812771 -113458673 + AT_rich Low_complexity Low_complexity 1 42 0 439 250 146 39 chr9 28813009 28813269 -113458175 + HAL1 LINE L1 1 288 -2219 * 8082 143 23 21 chr9 28813268 28813741 -113457703 + L1MB3 LINE L1 18 489 -5895 2237 110 0 3 chr9 28813741 28814042 -113457402 + AluSq SINE Alu 1 300 -13 8082 143 23 21 chr9 28814042 28815110 -113456334 + L1MB3 LINE L1 489 1561 -4823 585 266 0 0 chr9 28815110 28815234 -113456210 + FAM SINE Alu 2 125 -60 1075 204 13 35 chr9 28815234 28815460 -113455984 + AluJo SINE Alu 85 305 -7 3313 164 85 32 chr9 28815463 28815989 -113455455 + L1MB3 LINE L1 1686 2183 -4199 2409 71 0 0 chr9 28815989 28816323 -113455121 + AluY SINE Alu 1 334 0 3313 164 85 32 chr9 28816323 28816942 -113454502 + L1MB3 LINE L1 2183 2900 -3482 3221 155 31 3 chr9 28816954 28817561 -113453883 + L1MB3 LINE L1 5795 6418 -1 189 74 0 0 chr9 28818034 28818061 -113453383 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 852 235 33 42 chr9 28818292 28818598 -113452846 + HAL1 LINE L1 720 1022 -1485 527 209 29 14 chr9 28818669 28818808 -113452636 + HAL1 LINE L1 1211 1351 -1156 3143 35 0 0 chr9 28818909 28819303 -113452141 - L1P LINE L1 -1255 4891 4498 322 267 55 36 chr9 28819645 28819810 -113451634 + L1ME LINE L1 5673 5840 -281 23 33 0 0 chr9 28820231 28820261 -113451183 + AT_rich Low_complexity Low_complexity 1 30 0 200 152 0 0 chr9 28820268 28820301 -113451143 - L2 LINE L2 -17 3296 3264 2931 159 36 82 chr9 28820329 28821058 -113450386 - L1PB4 LINE L1 -7 6149 5455 700 306 94 25 chr9 28821173 28821618 -113449826 + HAL1 LINE L1 1620 2095 -412 2355 54 13 0 chr9 28821657 28821955 -113449489 + AluY SINE Alu 1 302 -9 256 192 115 0 chr9 28821980 28822058 -113449386 + HAL1 LINE L1 2219 2305 -202 1833 166 0 23 chr9 28822721 28823022 -113448422 + AluJo SINE Alu 1 294 -18 1955 173 59 11 chr9 28823039 28823414 -113448030 + MSTD LTR MaLR 4 396 0 1085 121 136 29 chr9 28823547 28823753 -113447691 + MER30 DNA MER1_type 3 230 0 2327 82 10 0 chr9 28823904 28824196 -113447248 + AluSp SINE Alu 1 295 -18 309 247 118 21 chr9 28824497 28824590 -113446854 - L3 LINE CR1 -6 1571 1470 * 444 341 40 0 chr9 28824570 28824746 -113446698 + L2 LINE L2 2578 2760 -554 225 235 190 114 chr9 28824815 28825104 -113446340 + L2 LINE L2 2943 3253 -60 249 250 313 21 chr9 28825635 28825779 -113445665 - MIR3 SINE MIR -9 199 14 249 192 39 0 chr9 28826906 28826958 -113444486 - MER5A DNA MER1_type -80 109 56 2331 79 16 0 chr9 28827515 28827819 -113443625 - AluSc SINE Alu 0 309 1 364 188 43 0 chr9 28828293 28828362 -113443082 - MIR SINE MIR -70 192 121 768 129 282 38 chr9 28828365 28828574 -113442870 + MER93b LTR ERV1 1 260 -113 994 194 114 38 chr9 28828636 28829064 -113442380 - LTR8A LTR ERV1 -24 627 143 2489 75 0 3 chr9 28829087 28829393 -113442051 + AluSc SINE Alu 1 305 -4 258 185 15 15 chr9 28829544 28829609 -113441835 - MER87 LTR ERV1 -395 146 82 342 179 64 13 chr9 28829650 28829728 -113441716 - LTR8 LTR ERV1 -607 84 3 508 168 75 0 chr9 28829732 28829839 -113441605 + MER93a LTR ERV1 288 402 0 181 379 0 0 chr9 28829901 28829959 -113441485 - MIR SINE MIR -100 108 51 1877 135 14 3 chr9 28830673 28830961 -113440483 + AluSx SINE Alu 1 291 -21 2364 84 3 13 chr9 28831325 28831633 -113439811 - AluSq SINE Alu -8 305 1 287 220 37 46 chr9 28831853 28831962 -113439482 - MER34 LTR ERV1 0 542 435 407 227 105 63 chr9 28832324 28832562 -113438882 - L1MC4a LINE L1 -1962 5846 5599 826 146 7 29 chr9 28832729 28832866 -113438578 - AluJo SINE Alu -178 134 1 823 198 77 0 chr9 28833019 28833201 -113438243 + MER67A LTR ERV1 348 543 0 1568 167 64 4 chr9 28833246 28833589 -113437855 + MER93a LTR ERV1 1 402 0 440 317 22 27 chr9 28833631 28833814 -113437630 - L2 LINE L2 -180 3092 2911 195 256 0 0 chr9 28834060 28834103 -113437341 + MIR SINE MIR 72 114 -148 536 204 15 15 chr9 28834147 28834279 -113437165 - LTR67 LTR ERVL -2 555 424 24 0 0 0 chr9 28834887 28834911 -113436533 + AT_rich Low_complexity Low_complexity 1 24 0 351 293 103 35 chr9 28836001 28836175 -113435269 - MIR SINE MIR -54 208 23 289 323 174 0 chr9 28836600 28836761 -113434683 - L2 LINE L2 -990 2324 2136 1724 51 174 16 chr9 28836856 28837109 -113434335 - AluY SINE Alu -8 293 1 2404 55 0 3 chr9 28838140 28838465 -113432979 - AluY SINE Alu 0 311 1 456 352 87 7 chr9 28839107 28839394 -113432050 + L2 LINE L2 1876 2185 -1129 559 262 52 56 chr9 28839399 28839651 -113431793 + MER112 DNA MER1_type 9 259 -1 522 357 101 47 chr9 28839729 28840140 -113431304 - L2 LINE L2 -2379 935 469 2174 98 0 23 chr9 28840140 28840446 -113430998 - AluY SINE Alu -12 299 1 522 357 101 47 chr9 28840446 28840740 -113430704 - L2 LINE L2 -2845 469 192 451 209 73 36 chr9 28841170 28841280 -113430164 + FRAM SINE Alu 38 151 -25 313 336 102 33 chr9 28841528 28841980 -113429464 + L1M4 LINE L1 4802 5284 -862 228 67 0 0 chr9 28841983 28842013 -113429431 + (T)n Simple_repeat Simple_repeat 1 30 0 7590 28 4 16 chr9 28842014 28843010 -113428434 - L1PA2 LINE L1 0 6155 5163 221 237 50 36 chr9 28843010 28843149 -113428295 + A-rich Low_complexity Low_complexity 5 145 0 248 228 0 22 chr9 28843162 28843254 -113428190 - L1PA2 LINE L1 -1130 5016 4927 8466 187 51 22 chr9 28843584 28845364 -113426080 - L1 LINE L1 -802 6046 4171 2319 99 0 0 chr9 28845364 28845658 -113425786 - AluSg SINE Alu -16 294 1 8466 187 51 22 chr9 28845658 28846366 -113425078 - L1 LINE L1 -2677 4171 3485 1636 229 40 69 chr9 28846361 28847275 -113424169 - L1 LINE L1 -3687 3161 2273 * 367 295 53 70 chr9 28847399 28847626 -113423818 - L1ME4a LINE L1 -111 6010 5788 26515 196 27 33 chr9 28847891 28853347 -113418097 - HERVI LTR ERV1 -2338 5447 26 1954 205 70 18 chr9 28853372 28853860 -113417584 - LTR10D LTR ERV1 0 513 1 247 245 49 20 chr9 28854091 28854193 -113417251 - L1ME4a LINE L1 -1 6120 6016 597 221 16 8 chr9 28854247 28854374 -113417070 - FLAM_A SINE Alu -2 131 4 683 225 0 0 chr9 28854417 28854546 -113416898 + FLAM_A SINE Alu 2 130 -3 1993 161 0 0 chr9 28854583 28854888 -113416556 - AluSx SINE Alu -7 305 1 310 215 28 3 chr9 28854902 28854986 -113416458 - L1M3 LINE L1 -378 5786 5703 2360 102 0 6 chr9 28856800 28857114 -113414330 - AluSx SINE Alu 0 312 1 462 246 77 8 chr9 28857248 28857378 -113414066 - MER3 DNA MER1_type -70 139 1 1462 187 56 47 chr9 28857978 28858337 -113413107 - MLT1A1 LTR MaLR -3 362 1 1006 171 0 18 chr9 28858343 28858513 -113412931 - FRAM SINE Alu -9 167 1 2043 135 0 17 chr9 28858522 28858819 -113412625 - AluSx SINE Alu -20 292 1 2173 117 3 3 chr9 28858868 28859167 -113412277 - AluSx SINE Alu -13 299 1 1840 136 6 57 chr9 28859364 28859543 -113411901 - AluSq SINE Alu -12 301 143 2334 87 10 3 chr9 28859543 28859854 -113411590 - AluSp SINE Alu 0 313 1 1840 136 6 57 chr9 28859854 28859991 -113411453 - AluSq SINE Alu -170 143 1 837 211 57 29 chr9 28860485 28860694 -113410750 + MER20 DNA MER1_type 1 215 -4 2204 119 0 0 chr9 28860873 28861183 -113410261 - AluSx SINE Alu -2 310 1 5315 119 23 5 chr9 28861732 28862556 -113408888 + L1PA13 LINE L1 5321 6159 -4 34 0 0 0 chr9 28862582 28862616 -113408828 + AT_rich Low_complexity Low_complexity 1 34 0 180 77 0 0 chr9 28862818 28862844 -113408600 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 1854 171 7 3 chr9 28862867 28863176 -113408268 - AluJb SINE Alu 0 312 3 1938 164 0 7 chr9 28863180 28863484 -113407960 - AluJo SINE Alu -10 302 1 2022 92 0 121 chr9 28863603 28863951 -113407493 - AluSg SINE Alu -4 306 1 286 258 8 75 chr9 28864034 28864154 -113407290 + MIR SINE MIR 149 260 -2 272 263 168 0 chr9 28864255 28864350 -113407094 + MIR SINE MIR 119 229 -33 2292 85 3 0 chr9 28864496 28864813 -113406631 - AluSp SINE Alu 0 313 1 431 237 0 0 chr9 28865755 28865848 -113405596 + L1PB4 LINE L1 5976 6068 -88 249 328 59 34 chr9 28866481 28866600 -113404844 - MER5A DNA MER1_type -3 186 65 272 278 37 49 chr9 28866722 28866775 -113404669 + MER103 DNA DNA 6 58 -108 2288 113 0 0 chr9 28866775 28867084 -113404360 - AluSg SINE Alu -1 309 1 272 278 37 49 chr9 28867084 28867192 -113404252 + MER103 DNA DNA 58 165 -1 21 36 0 0 chr9 28868209 28868237 -113403207 + AT_rich Low_complexity Low_complexity 1 28 0 3986 202 7 17 chr9 28868571 28868617 -113402827 - L1 LINE L1 -1704 4442 4397 213 39 0 0 chr9 28868617 28868643 -113402801 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 3986 202 7 17 chr9 28868643 28868675 -113402769 - L1 LINE L1 -1749 4397 4366 2229 88 14 0 chr9 28868675 28868970 -113402474 - AluY SINE Alu -12 299 1 3986 202 7 17 chr9 28868970 28869771 -113401673 - L1 LINE L1 -1780 4366 3571 * 9327 111 14 5 chr9 28869762 28871189 -113400255 + L1PBa LINE L1 827 2266 -4597 1523 136 0 0 chr9 28871195 28871409 -113400035 + AluSg SINE Alu 1 214 -96 1297 201 71 28 chr9 28871516 28871908 -113399536 - MLT1C LTR MaLR -56 411 3 1443 191 22 18 chr9 28872621 28872921 -113398523 - AluJo SINE Alu 0 312 21 403 133 81 204 chr9 28873523 28873734 -113397710 - MER53 DNA DNA -4 185 1 757 179 130 86 chr9 28874257 28874386 -113397058 - L1MB8 LINE L1 0 6178 6056 1412 189 62 24 chr9 28874386 28874677 -113396767 - AluJo SINE Alu 0 302 1 757 179 130 86 chr9 28874677 28874848 -113396596 - L1MB8 LINE L1 -122 6056 5865 283 219 0 0 chr9 28874855 28874919 -113396525 - L1MB8 LINE L1 -1279 4867 4804 1548 161 39 0 chr9 28875101 28875380 -113396064 - L1MB8 LINE L1 -345 5833 5544 1166 139 0 0 chr9 28875472 28875638 -113395806 - AluSg/x SINE Alu -13 297 132 2375 84 0 0 chr9 28875960 28876269 -113395175 - AluY SINE Alu -2 309 1 2410 117 5 3 chr9 28876273 28876641 -113394803 - L1PB1 LINE L1 -1 6150 5782 237 139 0 0 chr9 28876641 28876684 -113394760 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 3444 146 21 17 chr9 28876696 28877552 -113393892 - L1PB1 LINE L1 -363 5788 4928 1510 209 15 0 chr9 28878489 28878762 -113392682 - AluJo SINE Alu -35 277 1 181 310 69 0 chr9 28878906 28878964 -113392480 - L2 LINE L2 -1 3312 3251 2178 96 0 27 chr9 28878997 28879290 -113392154 + AluSc SINE Alu 7 291 -18 2136 95 3 34 chr9 28879653 28879948 -113391496 + AluSx SINE Alu 1 286 -26 1360 195 29 46 chr9 28880723 28881030 -113390414 - AluJb SINE Alu 0 302 1 22 0 0 0 chr9 28881243 28881265 -113390179 + AT_rich Low_complexity Low_complexity 1 22 0 257 123 82 14 chr9 28881296 28881369 -113390075 - HAL1 LINE L1 -155 2352 2275 715 219 16 0 chr9 28881454 28881637 -113389807 - L1MA4 LINE L1 -7 6293 6108 1211 61 12 6 chr9 28881642 28881805 -113389639 + L1PA11 LINE L1 6010 6173 -1 4472 158 19 33 chr9 28881805 28882885 -113388559 - L1MA4 LINE L1 -190 6110 5042 1004 112 134 11 chr9 28882907 28883086 -113388358 - MSTA LTR MaLR -54 374 174 1078 127 0 0 chr9 28883086 28883236 -113388208 - AluSg/x SINE Alu -16 294 145 449 99 0 28 chr9 28883238 28883309 -113388135 - LTR7 LTR ERV1 -2 448 380 361 136 0 0 chr9 28883422 28883481 -113387963 - AluJ/FLAM SINE Alu -243 59 1 256 276 74 39 chr9 28883481 28883741 -113387703 + L1ME4a LINE L1 5625 5887 -234 330 261 54 36 chr9 28883803 28883914 -113387530 + L1ME4a LINE L1 5986 6098 -23 4551 95 14 14 chr9 28884017 28884710 -113386734 + L1MA1 LINE L1 5610 6302 0 21 57 0 0 chr9 28884710 28884745 -113386699 + AT_rich Low_complexity Low_complexity 1 35 0 2202 120 13 0 chr9 28884958 28885258 -113386186 + AluSg SINE Alu 1 304 -6 194 222 0 79 chr9 28885958 28885989 -113385455 + L2 LINE L2 2992 3017 -255 2202 93 7 10 chr9 28885989 28886289 -113385155 + AluSx SINE Alu 1 299 -13 194 222 0 79 chr9 28886289 28886320 -113385124 + L2 LINE L2 3017 3049 -223 1229 299 75 9 chr9 28886326 28886767 -113384677 - MLT1H LTR MaLR -9 540 71 2344 208 50 80 chr9 28886815 28886864 -113384580 - L1ME1 LINE L1 -5 6161 6112 3442 170 70 4 chr9 28886864 28887507 -113383937 - L1MB2 LINE L1 -7 6164 5472 213 119 0 0 chr9 28887507 28887549 -113383895 + (TTG)n Simple_repeat Simple_repeat 1 42 0 3442 170 70 4 chr9 28887549 28887589 -113383855 - L1MB2 LINE L1 -699 5472 5436 2344 208 50 80 chr9 28887589 28888956 -113382488 - L1ME1 LINE L1 -54 6112 4790 2316 88 3 0 chr9 28888956 28889250 -113382194 - AluSc SINE Alu -14 295 1 203 250 77 0 chr9 28890145 28890197 -113381247 - L2 LINE L2 -3 3269 3214 23 0 0 0 chr9 28890496 28890519 -113380925 + AT_rich Low_complexity Low_complexity 1 23 0 1749 123 104 38 chr9 28890761 28891077 -113380367 - MER1B DNA MER1_type 0 337 1 257 367 22 0 chr9 28891630 28891720 -113379724 - L3 LINE CR1 -87 1490 1399 874 339 119 21 chr9 28891839 28892517 -113378927 - L2 LINE L2 -182 3090 2332 502 196 0 31 chr9 28893588 28893685 -113377759 + Tigger2 DNA MER2_type 2614 2707 -11 26 74 0 0 chr9 28893766 28893820 -113377624 + AT_rich Low_complexity Low_complexity 1 54 0 930 200 6 0 chr9 28893940 28894100 -113377344 - MER5A DNA MER1_type -1 188 28 385 147 59 0 chr9 28894467 28894535 -113376909 + Tigger2 DNA MER2_type 2553 2624 -94 601 233 70 52 chr9 28894540 28894712 -113376732 - MIR SINE MIR -65 197 23 2215 105 0 3 chr9 28894729 28895014 -113376430 + AluSp SINE Alu 1 284 -29 666 163 0 0 chr9 28894916 28895014 -113376430 + AluSp/q SINE Alu 187 322 0 249 53 26 0 chr9 28895014 28895052 -113376392 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 491 289 138 4 chr9 28895626 28895879 -113375565 + L1ME LINE L1 5463 5749 -372 1822 142 16 67 chr9 28895964 28896280 -113375164 - AluJb SINE Alu -9 303 4 201 219 24 0 chr9 28896298 28896339 -113375105 - MIR SINE MIR -217 45 4 26 74 0 0 chr9 28896602 28896656 -113374788 + AT_rich Low_complexity Low_complexity 1 54 0 2464 86 0 3 chr9 28896670 28896973 -113374471 - AluSg SINE Alu -8 302 1 1025 181 110 8 chr9 28897166 28897420 -113374024 + HAL1 LINE L1 2 281 -2226 1814 147 7 33 chr9 28897549 28897731 -113373713 + AluJo SINE Alu 3 175 -137 704 0 9 56 chr9 28897731 28897838 -113373606 + (TTTTA)n Simple_repeat Simple_repeat 3 104 0 1814 147 7 33 chr9 28897838 28897961 -113373483 + AluJo SINE Alu 175 300 -12 2184 77 42 3 chr9 28898076 28898362 -113373082 - AluY SINE Alu -14 297 1 920 208 6 17 chr9 28898399 28898572 -113372872 + FAM SINE Alu 1 171 -4 1300 76 0 0 chr9 28898993 28899150 -113372294 - AluSg/x SINE Alu -12 300 144 763 192 0 8 chr9 28899151 28899281 -113372163 + AluJo SINE Alu 121 249 -63 22 0 0 0 chr9 28899774 28899796 -113371648 + AT_rich Low_complexity Low_complexity 1 22 0 2219 98 3 3 chr9 28899796 28900093 -113371351 - AluSp SINE Alu -16 297 1 2287 86 0 0 chr9 28900787 28901078 -113370366 - AluSc SINE Alu -13 296 6 1996 188 42 24 chr9 28901347 28901847 -113369597 + L1M4 LINE L1 4738 5246 -900 324 320 31 39 chr9 28902102 28902230 -113369214 - L2 LINE L2 0 3272 3146 480 305 184 24 chr9 28903003 28903017 -113368427 - L3 LINE CR1 -376 1201 1191 2103 112 20 10 chr9 28903017 28903322 -113368122 - AluSx SINE Alu -4 308 1 480 305 184 24 chr9 28903322 28903681 -113367763 - L3 LINE CR1 -386 1191 768 1354 149 42 42 chr9 28903730 28903992 -113367452 + MER2 DNA MER2_type 2 263 -82 746 157 30 37 chr9 28904042 28904176 -113367268 - FLAM_C SINE Alu 0 133 1 758 207 7 0 chr9 28904260 28904395 -113367049 + AluJo SINE Alu 1 136 -176 2055 329 34 28 chr9 28904642 28905013 -113366431 - Tigger7 DNA MER2_type -512 1975 1608 2163 96 3 56 chr9 28905013 28905335 -113366109 + AluSg SINE Alu 1 305 -5 2055 329 34 28 chr9 28905335 28906335 -113365109 - Tigger7 DNA MER2_type -879 1608 596 2270 96 3 7 chr9 28906351 28906654 -113364790 - AluSq SINE Alu -11 302 1 180 227 68 0 chr9 28907050 28907094 -113364350 + L2 LINE L2 3217 3263 -9 1028 143 16 28 chr9 28907287 28907469 -113363975 + Tigger2a DNA MER2_type 1 180 -254 4035 159 16 4 chr9 28907605 28908410 -113363034 - L1 LINE L1 -1096 5050 4236 2287 110 0 0 chr9 28908447 28908746 -113362698 + AluSx SINE Alu 2 300 -12 230 196 0 18 chr9 28910401 28910457 -113360987 - L1MC5 LINE L1 -99 7862 7808 23 33 0 0 chr9 28910507 28910537 -113360907 + AT_rich Low_complexity Low_complexity 1 30 0 2249 113 0 13 chr9 28911040 28911350 -113360094 - AluSx SINE Alu -6 306 1 1236 234 41 24 chr9 28911522 28911817 -113359627 + AluJo SINE Alu 1 300 -12 367 255 0 21 chr9 28911823 28911964 -113359480 + GA-rich Low_complexity Low_complexity 3 140 0 2555 62 0 3 chr9 28912038 28912343 -113359101 - AluY SINE Alu -7 304 1 190 314 12 70 chr9 28912445 28912531 -113358913 + MIR SINE MIR 84 164 -98 2043 129 3 7 chr9 28913564 28913866 -113357578 - AluSq SINE Alu -12 301 1 262 240 0 0 chr9 28914411 28914461 -113356983 + MER5A DNA MER1_type 9 58 -131 624 81 0 35 chr9 28914803 28914889 -113356555 + AluSg/x SINE Alu 209 291 -19 1570 149 81 50 chr9 28915036 28915178 -113356266 - L1MA4 LINE L1 -4 6296 6160 2351 47 6 38 chr9 28915178 28915495 -113355949 - AluY SINE Alu -4 307 1 1570 149 81 50 chr9 28915495 28915684 -113355760 - L1MA4 LINE L1 -140 6160 5949 2084 72 79 7 chr9 28915684 28915974 -113355470 - AluY SINE Alu 0 311 1 1570 149 81 50 chr9 28915974 28916023 -113355421 - L1MA4 LINE L1 -351 5949 5903 1582 100 0 0 chr9 28916264 28916474 -113354970 + AluSg/x SINE Alu 86 295 -14 208 244 12 12 chr9 28916589 28916675 -113354769 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 1555 196 28 11 chr9 28917439 28917724 -113353720 - AluJo SINE Alu -22 290 1 2587 62 0 3 chr9 28917915 28918223 -113353221 - AluY SINE Alu -4 307 1 213 247 82 82 chr9 28918270 28918355 -113353089 - MIR SINE MIR -11 251 167 776 273 127 18 chr9 28918417 28918930 -113352514 - L1MC4a LINE L1 -1915 5893 5325 2332 101 0 0 chr9 28919140 28919438 -113352006 + AluY SINE Alu 1 298 -13 2267 105 3 0 chr9 28919827 28920113 -113351331 - AluSg SINE Alu -23 287 1 2379 84 0 3 chr9 28920562 28920859 -113350585 + AluSg SINE Alu 1 296 -14 441 342 47 10 chr9 28920902 28921095 -113350349 + MIR SINE MIR 46 245 -17 205 238 36 0 chr9 28921291 28921375 -113350069 + (TA)n Simple_repeat Simple_repeat 1 87 0 219 69 0 0 chr9 28921551 28921580 -113349864 + (T)n Simple_repeat Simple_repeat 1 29 0 2378 76 13 0 chr9 28922346 28922647 -113348797 + AluSx SINE Alu 1 305 -7 2304 65 3 17 chr9 28922744 28923038 -113348406 - AluY SINE Alu -17 294 5 1029 233 22 13 chr9 28923089 28923321 -113348123 + MER8 DNA MER2_type 2 235 -4 5391 65 124 0 chr9 28923393 28924128 -113347316 + LTR12 LTR ERV1 1 826 0 24 32 0 0 chr9 28924341 28924372 -113347072 + AT_rich Low_complexity Low_complexity 1 31 0 2217 95 0 13 chr9 28924752 28925056 -113346388 + AluSc SINE Alu 1 300 -9 286 247 0 0 chr9 28925103 28925176 -113346268 + L1M4 LINE L1 4540 4612 -1534 2216 107 0 0 chr9 28925595 28925884 -113345560 + AluSg SINE Alu 6 294 -16 439 253 146 28 chr9 28926216 28926394 -113345050 + MIR SINE MIR 8 206 -56 1889 108 4 0 chr9 28926753 28927004 -113344440 - AluSx SINE Alu -37 275 24 239 143 0 18 chr9 28929068 28929124 -113342320 + (TC)n Simple_repeat Simple_repeat 2 56 0 2061 113 0 0 chr9 28929618 28929893 -113341551 + AluSg SINE Alu 35 309 -1 1709 155 60 3 chr9 28930145 28930429 -113341015 - AluJo SINE Alu -12 300 1 1940 138 27 17 chr9 28930473 28930770 -113340674 - AluSx SINE Alu -12 300 1 247 215 130 57 chr9 28930891 28931068 -113340376 - L1MC/D LINE L1 -2331 5477 5288 180 0 0 0 chr9 28931072 28931092 -113340352 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1726 82 41 0 chr9 28931104 28931323 -113340121 + AluSg SINE Alu 1 228 -82 180 0 0 0 chr9 28931323 28931343 -113340101 + (A)n Simple_repeat Simple_repeat 1 20 0 580 333 105 27 chr9 28931365 28931953 -113339491 - L1MC/D LINE L1 -919 5227 4594 1580 103 24 0 chr9 28932696 28932949 -113338495 + L1P LINE L1 3849 4107 -2039 1225 170 46 32 chr9 28933050 28933332 -113338112 - L1M4 LINE L1 -460 5718 5433 2549 59 3 0 chr9 28933361 28933667 -113337777 + AluY SINE Alu 1 307 -4 2202 106 0 0 chr9 28933670 28933981 -113337463 - AluSc SINE Alu 0 311 1 531 277 113 9 chr9 28933981 28934309 -113337135 - HAL1 LINE L1 -2144 363 2 223 269 0 39 chr9 28934632 28934710 -113336734 - MIR SINE MIR 0 262 188 4834 125 50 47 chr9 28934710 28935818 -113335626 + pTR5 LTR ERV1 741 2025 -413 230 276 10 0 chr9 28935818 28935916 -113335528 + LTR30 LTR ERV1 544 642 -80 1506 92 0 0 chr9 28935923 28936140 -113335304 + pTR5 LTR ERV1 175 391 -2047 206 242 30 146 chr9 28936889 28937054 -113334390 - L2 LINE L2 -340 2973 2828 290 308 44 33 chr9 28937591 28937682 -113333762 - L2 LINE L2 -55 3217 3126 186 370 125 36 chr9 28937848 28938151 -113333293 + L2 LINE L2 2429 2758 -556 2096 150 94 13 chr9 28938281 28938675 -113332769 + MSTB LTR MaLR 1 426 0 9362 186 8 2 chr9 28938675 28940315 -113331129 + MSTB-int LTR MaLR 1 1651 0 1847 141 149 16 chr9 28940315 28940691 -113330753 + MSTB LTR MaLR 1 426 0 2269 107 0 0 chr9 28940707 28941006 -113330438 - AluSc SINE Alu -10 299 1 2042 204 42 75 chr9 28941211 28941485 -113329959 + L1ME1 LINE L1 2339 2621 -3525 543 52 0 26 chr9 28941485 28941562 -113329882 + L1PA8 LINE L1 6096 6170 -2 2042 204 42 75 chr9 28941562 28941613 -113329831 + L1ME1 LINE L1 2621 2672 -3474 1608 211 7 0 chr9 28941613 28941897 -113329547 - AluJo SINE Alu -16 296 11 2042 204 42 75 chr9 28941897 28942088 -113329356 + L1ME1 LINE L1 2672 2868 -3278 2290 113 0 3 chr9 28942088 28942398 -113329046 + AluSg1 SINE Alu 1 309 0 2042 204 42 75 chr9 28942398 28942689 -113328755 + L1ME1 LINE L1 2868 3121 -3025 * 2311 206 47 75 chr9 28942687 28942788 -113328656 + L1ME1 LINE L1 4658 4760 -1406 2264 104 3 0 chr9 28942788 28943087 -113328357 + AluSx SINE Alu 1 300 -12 2311 206 47 75 chr9 28943087 28943136 -113328308 + L1ME1 LINE L1 4760 4809 -1357 1741 179 34 3 chr9 28943136 28943427 -113328017 + AluJo SINE Alu 1 300 -12 2311 206 47 75 chr9 28943427 28944792 -113326652 + L1ME1 LINE L1 4809 6112 -54 3506 163 72 3 chr9 28944792 28944832 -113326612 + L1MB2 LINE L1 5436 5472 -699 213 119 0 0 chr9 28944832 28944874 -113326570 + (CAA)n Simple_repeat Simple_repeat 1 42 0 3506 163 72 3 chr9 28944874 28945515 -113325929 + L1MB2 LINE L1 5472 6164 -7 2311 206 47 75 chr9 28945515 28945564 -113325880 + L1ME1 LINE L1 6112 6161 -5 1089 299 75 9 chr9 28945612 28946053 -113325391 + MLT1H LTR MaLR 71 540 -9 193 222 0 79 chr9 28946059 28946090 -113325354 - L2 LINE L2 -223 3049 3024 2197 94 7 10 chr9 28946090 28946388 -113325056 - AluSx SINE Alu -15 297 1 193 222 0 79 chr9 28946388 28946419 -113325025 - L2 LINE L2 -248 3024 2992 2228 120 13 0 chr9 28947119 28947418 -113324026 - AluSg SINE Alu -7 303 1 21 57 0 0 chr9 28947631 28947666 -113323778 + AT_rich Low_complexity Low_complexity 1 35 0 4522 95 14 14 chr9 28947666 28948359 -113323085 - L1MA1 LINE L1 0 6302 5610 275 278 119 58 chr9 28948462 28948899 -113322545 - L1ME4a LINE L1 -23 6098 5628 2258 91 0 20 chr9 28948899 28949195 -113322249 + AluSg SINE Alu 5 294 -16 275 278 119 58 chr9 28949195 28949236 -113322208 - L1ME4a LINE L1 -493 5628 5591 2264 100 36 0 chr9 28949864 28950165 -113321279 - AluSx SINE Alu 0 312 1 581 276 71 22 chr9 28950296 28950521 -113320923 - MIR SINE MIR -7 255 20 222 128 0 0 chr9 28951468 28951507 -113319937 + (CAG)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr9 28951887 28951918 -113319526 + AT_rich Low_complexity Low_complexity 1 31 0 2351 84 3 3 chr9 28954129 28954428 -113317016 - AluSx SINE Alu -13 299 1 685 315 47 47 chr9 28954941 28955347 -113316097 + L3 LINE CR1 719 1124 -453 457 286 81 11 chr9 28955322 28955512 -113315932 + MIR SINE MIR 16 221 -41 * 2015 123 7 0 chr9 28955539 28955837 -113315607 + AluSc SINE Alu 1 300 0 2266 117 0 0 chr9 28956515 28956814 -113314630 + AluSg SINE Alu 1 299 -11 276 122 0 0 chr9 28956832 28956873 -113314571 - MADE1 DNA Mariner -37 43 3 353 312 60 6 chr9 28957091 28957285 -113314159 - L2 LINE L2 -8 3305 3134 2038 157 0 0 chr9 28957441 28957746 -113313698 + AluJb SINE Alu 1 305 -7 369 337 136 30 chr9 28957953 28958520 -113312924 - L2 LINE L2 -357 2957 2291 2152 104 14 0 chr9 28958520 28958807 -113312637 - AluSg SINE Alu -19 291 1 369 337 136 30 chr9 28958807 28958980 -113312464 - L2 LINE L2 -1023 2291 2138 2474 53 0 13 chr9 28959084 28959388 -113312056 - AluY SINE Alu -11 300 1 343 258 196 6 chr9 28960412 28960575 -113310869 - MIR SINE MIR 0 262 69 1615 197 7 7 chr9 28960576 28960870 -113310574 + AluJo SINE Alu 1 294 -18 355 279 141 50 chr9 28960972 28961355 -113310089 + MLT1K LTR MaLR 165 582 -6 348 301 86 53 chr9 28961408 28961617 -113309827 + MIR SINE MIR 47 262 0 210 191 0 0 chr9 28962084 28962131 -113309313 + (TG)n Simple_repeat Simple_repeat 1 47 0 521 340 48 10 chr9 28962439 28962648 -113308796 + L2 LINE L2 2869 3085 -187 2272 101 3 16 chr9 28963255 28963563 -113307881 + AluSp SINE Alu 1 304 -9 28 29 0 0 chr9 28963647 28963682 -113307762 + AT_rich Low_complexity Low_complexity 1 35 0 477 243 29 6 chr9 28963682 28963855 -113307589 + (TA)n Simple_repeat Simple_repeat 2 178 0 416 291 156 30 chr9 28964338 28964633 -113306811 - L2 LINE L2 0 3272 2941 2431 91 0 0 chr9 28964987 28965296 -113306148 + AluY SINE Alu 1 309 -2 181 327 0 0 chr9 28965734 28965786 -113305658 - MIR3 SINE MIR -6 202 151 314 204 5 0 chr9 28965900 28965976 -113305468 - MIR3 SINE MIR -52 156 79 1905 149 13 0 chr9 28965990 28966291 -113305153 - AluSx SINE Alu -6 306 2 405 247 232 58 chr9 28966393 28966842 -113304602 - MLT1H LTR MaLR 0 549 23 333 262 8 74 chr9 28966898 28967020 -113304424 + MIR SINE MIR 127 240 -22 576 304 157 9 chr9 28967758 28967975 -113303469 + MIR SINE MIR 14 262 0 267 280 0 43 chr9 28968097 28968190 -113303254 - L2 LINE L2 0 3313 3225 1920 228 110 6 chr9 28968280 28968790 -113302654 + MER82 DNA MER2_type 91 653 0 9332 65 6 2 chr9 28969192 28971215 -113300229 - L1PA7 LINE L1 -1 6153 4130 2292 90 3 0 chr9 28972192 28972482 -113298962 + AluSc SINE Alu 1 291 -18 23 33 0 0 chr9 28973591 28973621 -113297823 + AT_rich Low_complexity Low_complexity 1 30 0 2233 202 93 48 chr9 28973805 28974172 -113297272 - MER67B LTR ERV1 0 661 253 2234 146 67 15 chr9 28974172 28974576 -113296868 + MSTB LTR MaLR 2 426 0 2233 202 93 48 chr9 28974576 28974828 -113296616 - MER67B LTR ERV1 -408 253 14 551 105 23 0 chr9 28974830 28974916 -113296528 - MER67A LTR ERV1 -455 88 1 726 142 213 64 chr9 28975134 28975346 -113296098 - MER33 DNA MER1_type -2261 324 58 1837 155 0 7 chr9 28975346 28975658 -113295786 - AluJb SINE Alu 0 310 1 726 142 213 64 chr9 28975658 28975726 -113295718 - MER33 DNA MER1_type -2527 58 1 1887 27 0 0 chr9 28975968 28976188 -113295256 + L1PA5 LINE L1 5926 6145 -9 1212 189 12 24 chr9 28976265 28976519 -113294925 + MER46C DNA MER2_type 87 337 -1 2681 148 45 10 chr9 28976715 28977223 -113294221 - L1MB2 LINE L1 -3 6168 5643 2235 106 7 0 chr9 28977527 28977830 -113293614 + AluSx SINE Alu 1 305 -7 2313 43 7 4 chr9 28978156 28978462 -113292982 - AluY SINE Alu 0 307 1 225 0 0 0 chr9 28978462 28978487 -113292957 + (T)n Simple_repeat Simple_repeat 1 25 0 595 205 54 43 chr9 28978501 28978686 -113292758 + MER106A DNA MER1_type 50 236 0 22 0 0 0 chr9 28978724 28978746 -113292698 + AT_rich Low_complexity Low_complexity 1 22 0 213 240 0 0 chr9 28979269 28979319 -113292125 + (TA)n Simple_repeat Simple_repeat 1 50 0 426 376 127 19 chr9 28979499 28979861 -113291583 + L2 LINE L2 2872 3272 0 2906 212 41 2 chr9 28979876 28980490 -113290954 - MER82 DNA MER2_type -6 647 10 438 20 0 0 chr9 28982003 28982054 -113289390 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 575 246 37 55 chr9 28982068 28982393 -113289051 - L1ME4a LINE L1 -155 5966 5648 476 269 34 0 chr9 28982469 28982588 -113288856 + L2 LINE L2 3150 3272 0 2499 57 0 3 chr9 28982723 28983020 -113288424 + AluY SINE Alu 1 296 -15 244 250 76 21 chr9 28983085 28983229 -113288215 - L1ME4a LINE L1 -96 6025 5874 1798 188 3 3 chr9 28983238 28983536 -113287908 - AluJo SINE Alu -14 298 1 2270 100 0 7 chr9 28983536 28983835 -113287609 - AluSq SINE Alu -16 297 1 32 26 0 0 chr9 28985493 28985532 -113285912 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr9 28985562 28985598 -113285846 + AT_rich Low_complexity Low_complexity 1 36 0 2347 86 0 13 chr9 28985823 28986138 -113285306 + AluY SINE Alu 1 311 0 225 0 0 0 chr9 28986291 28986316 -113285128 + (TG)n Simple_repeat Simple_repeat 1 25 0 262 402 31 0 chr9 28986389 28986486 -113284958 + MIR SINE MIR 3 102 -160 292 172 35 0 chr9 28986510 28986568 -113284876 - MER92B LTR ERV1 -576 60 1 663 160 56 8 chr9 28986596 28986721 -113284723 - FLAM_C SINE Alu -2 131 1 262 162 27 0 chr9 28986790 28986864 -113284580 + (TA)n Simple_repeat Simple_repeat 1 76 0 307 276 124 7 chr9 28988454 28988599 -113282845 - L1ME4a LINE L1 -169 5952 5791 410 304 95 12 chr9 28988641 28988809 -113282635 + MIR SINE MIR 5 186 -76 2480 52 0 0 chr9 28989308 28989598 -113281846 + AluY SINE Alu 1 290 -21 2197 113 0 7 chr9 28991064 28991374 -113280070 + AluSg SINE Alu 1 308 -2 5056 102 23 11 chr9 28991374 28992195 -113279249 - L1MA3 LINE L1 -180 6125 5295 3193 163 51 2 chr9 28992196 28992767 -113278677 - Tigger7 DNA MER2_type -134 599 1 220 322 39 54 chr9 28992801 28992931 -113278513 + MIR SINE MIR 50 176 -32 1161 122 35 44 chr9 28993051 28993280 -113278164 - L1 LINE L1 -1902 4244 4018 302 125 11 34 chr9 28993352 28993440 -113278004 + (TA)n Simple_repeat Simple_repeat 2 87 0 180 0 0 0 chr9 28993724 28993744 -113277700 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2252 103 0 3 chr9 28993800 28994102 -113277342 + AluSc SINE Alu 1 301 -8 2063 128 17 3 chr9 28994425 28994715 -113276729 - AluSx SINE Alu -18 294 1 883 65 8 0 chr9 28994738 28994861 -113276583 + THE1B-int LTR MaLR 1457 1580 0 1922 120 49 55 chr9 28994861 28995154 -113276290 + THE1B LTR MaLR 1 293 -71 2512 68 0 0 chr9 28995154 28995463 -113275981 - AluY SINE Alu -2 309 1 1922 120 49 55 chr9 28995463 28995535 -113275909 + THE1B LTR MaLR 293 364 0 12457 144 16 7 chr9 28995535 28997655 -113273789 - L1PA12 LINE L1 -4266 3318 900 2286 131 47 33 chr9 28997655 28998014 -113273430 + THE1B LTR MaLR 1 364 0 12457 144 16 7 chr9 28998014 28998921 -113272523 - L1PA12 LINE L1 -6684 900 3 570 241 23 1 chr9 28998926 28999068 -113272376 - MER33 DNA MER1_type -251 73 1 2216 174 42 38 chr9 28999152 28999538 -113271906 + MSTA LTR MaLR 1 391 -37 2048 129 10 0 chr9 28999538 28999833 -113271611 - AluSg SINE Alu -12 298 1 2216 174 42 38 chr9 28999833 28999872 -113271572 + MSTA LTR MaLR 391 428 0 189 0 0 0 chr9 29000127 29000148 -113271296 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2398 60 3 0 chr9 29000151 29000435 -113271009 - AluY SINE Alu -26 285 1 273 98 0 0 chr9 29000555 29000596 -113270848 + (TA)n Simple_repeat Simple_repeat 2 42 0 527 286 12 18 chr9 29001348 29001519 -113269925 - MARNA DNA Mariner -348 238 69 265 224 0 0 chr9 29001866 29001915 -113269529 - MLT1D LTR MaLR -425 80 32 2451 179 85 0 chr9 29001921 29002368 -113269076 + MLT1D LTR MaLR 21 505 0 2199 122 3 0 chr9 29002619 29002923 -113268521 + AluSx SINE Alu 1 305 -7 206 268 0 70 chr9 29002926 29002997 -113268447 - L2 LINE L2 -75 3238 3173 391 336 148 0 chr9 29004131 29004348 -113267096 + L2 LINE L2 2455 2703 -611 466 296 159 11 chr9 29004628 29005000 -113266444 - L1ME3A LINE L1 -214 5956 5530 296 205 145 6 chr9 29005034 29005212 -113266232 - L1ME3A LINE L1 -800 5442 5191 397 89 0 0 chr9 29005227 29005283 -113266161 + MADE1 DNA Mariner 25 80 0 2432 66 0 10 chr9 29005382 29005683 -113265761 + AluY SINE Alu 1 298 -13 331 250 0 42 chr9 29005757 29005829 -113265615 + L2 LINE L2 3245 3313 0 571 304 65 20 chr9 29006112 29006359 -113265085 + MIR SINE MIR 5 262 0 2405 60 0 3 chr9 29006972 29007286 -113264158 - AluY SINE Alu 0 313 1 561 286 94 4 chr9 29007296 29007530 -113263914 - L1ME LINE L1 -301 5820 5566 2302 91 0 0 chr9 29008395 29008691 -113262753 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr9 29009143 29009164 -113262280 + AT_rich Low_complexity Low_complexity 1 21 0 2021 125 0 3 chr9 29009885 29010172 -113261272 + AluJb SINE Alu 1 286 -26 201 39 0 0 chr9 29010176 29010202 -113261242 + (CAA)n Simple_repeat Simple_repeat 2 27 0 185 263 118 26 chr9 29010279 29010355 -113261089 + MIR SINE MIR 20 102 -160 2386 82 0 3 chr9 29010790 29011083 -113260361 - AluY SINE Alu -19 292 1 234 269 184 14 chr9 29011169 29011310 -113260134 + MIR SINE MIR 66 230 -32 2260 169 71 22 chr9 29011578 29012040 -113259404 - L1MC3 LINE L1 -1519 6266 5782 967 250 130 32 chr9 29012056 29012464 -113258980 - HAL1 LINE L1 -1476 1031 584 3193 145 38 99 chr9 29012554 29012623 -113258821 - L1MB8 LINE L1 0 6178 6106 661 215 16 0 chr9 29012623 29012744 -113258700 + FLAM_A SINE Alu 1 123 -10 3193 145 38 99 chr9 29012744 29013474 -113257970 - L1MB8 LINE L1 -72 6106 5428 2514 57 0 0 chr9 29013495 29013791 -113257653 + AluY SINE Alu 1 296 -15 305 254 59 41 chr9 29013831 29014000 -113257444 - L1ME4a LINE L1 -76 6045 5874 1838 178 3 3 chr9 29014009 29014307 -113257137 - AluJo SINE Alu -14 298 1 2271 100 0 7 chr9 29014307 29014606 -113256838 - AluSq SINE Alu -16 297 1 32 26 0 0 chr9 29016265 29016304 -113255140 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr9 29016334 29016370 -113255074 + AT_rich Low_complexity Low_complexity 1 36 0 2354 86 0 13 chr9 29016595 29016910 -113254534 + AluY SINE Alu 1 311 0 207 0 0 0 chr9 29017063 29017086 -113254358 + (TG)n Simple_repeat Simple_repeat 1 23 0 257 402 31 0 chr9 29017159 29017256 -113254188 + MIR SINE MIR 3 102 -160 318 172 35 0 chr9 29017280 29017338 -113254106 - MER92B LTR ERV1 -576 60 1 716 160 56 8 chr9 29017366 29017491 -113253953 - FLAM_C SINE Alu -2 131 1 280 158 26 0 chr9 29017560 29017636 -113253808 + (TA)n Simple_repeat Simple_repeat 1 78 0 869 150 0 7 chr9 29019451 29019598 -113251846 + AluSg/x SINE Alu 165 310 -2 192 333 0 15 chr9 29020195 29020261 -113251183 - MER5A DNA MER1_type -14 175 111 263 291 36 9 chr9 29020456 29020566 -113250878 + MIR SINE MIR 129 241 -21 248 320 176 18 chr9 29020970 29021248 -113250196 - L2 LINE L2 -811 2503 2182 285 313 52 15 chr9 29021578 29021712 -113249732 + MIR SINE MIR 99 237 -25 546 272 189 0 chr9 29021959 29022150 -113249294 - LTR33 LTR ERVL -168 353 127 226 293 10 40 chr9 29022645 29022744 -113248700 - L2 LINE L2 -223 3049 2954 2413 81 0 0 chr9 29022787 29023082 -113248362 + AluSc SINE Alu 1 295 -14 197 373 25 17 chr9 29023454 29023572 -113247872 + L3 LINE CR1 1443 1561 -16 197 232 72 43 chr9 29024308 29024377 -113247067 - MIR SINE MIR -76 186 116 197 300 311 0 chr9 29024535 29024625 -113246819 - L2 LINE L2 -40 3232 3115 24 32 0 0 chr9 29024660 29024691 -113246753 + AT_rich Low_complexity Low_complexity 1 31 0 370 247 99 0 chr9 29024898 29025037 -113246407 - L1ME LINE L1 -356 5806 5640 3266 211 72 50 chr9 29025060 29025506 -113245938 - L1ME1 LINE L1 -6 6160 5725 2555 42 0 23 chr9 29025506 29025814 -113245630 - AluY SINE Alu -10 301 1 3266 211 72 50 chr9 29025814 29026644 -113244800 - L1ME1 LINE L1 -441 5725 4863 742 300 40 4 chr9 29026658 29026908 -113244536 + MIR SINE MIR 3 261 -1 275 286 120 31 chr9 29026926 29027118 -113244326 - L1ME LINE L1 -2219 5589 5381 306 186 85 76 chr9 29027145 29027263 -113244181 - MLT1H LTR MaLR -12 530 412 * 674 228 13 74 chr9 29027253 29027518 -113243926 - MLT1H LTR MaLR -256 293 5 316 246 93 51 chr9 29027759 29027877 -113243567 + L2 LINE L2 3191 3313 0 376 292 11 0 chr9 29027911 29028000 -113243444 - L2 LINE L2 0 3313 3224 281 306 116 35 chr9 29028062 29028235 -113243209 + MIR SINE MIR 49 235 -27 1726 163 0 17 chr9 29029110 29029404 -113242040 + AluJb SINE Alu 1 289 -23 188 264 293 9 chr9 29030007 29030219 -113241225 + L3b LINE CR1 1136 1407 -176 375 302 101 16 chr9 29030465 29030594 -113240850 + L2 LINE L2 3133 3272 0 21 0 0 0 chr9 29031388 29031409 -113240035 + AT_rich Low_complexity Low_complexity 1 21 0 2228 85 3 10 chr9 29031953 29032248 -113239196 + AluSg SINE Alu 1 293 -17 1199 68 0 0 chr9 29032952 29033099 -113238345 - L1PA7 LINE L1 0 6154 6008 584 97 0 0 chr9 29033099 29033171 -113238273 - AluS SINE Alu -240 73 2 209 188 62 0 chr9 29034398 29034446 -113236998 + L2 LINE L2 3259 3309 -4 2045 108 56 3 chr9 29034600 29034888 -113236556 - AluSq SINE Alu -10 303 1 211 111 0 28 chr9 29034977 29035013 -113236431 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 587 281 72 0 chr9 29035224 29035391 -113236053 - L2 LINE L2 -214 3058 2880 453 248 70 45 chr9 29035395 29035552 -113235892 + MIR SINE MIR 53 213 -49 183 350 70 10 chr9 29035975 29036075 -113235369 - MIR SINE MIR 0 262 157 2167 123 0 13 chr9 29037436 29037744 -113233700 - AluSc SINE Alu -5 304 1 318 251 146 23 chr9 29037770 29037941 -113233503 - MLT1H LTR MaLR -13 536 345 481 269 158 12 chr9 29038091 29038262 -113233182 - MLT1H LTR MaLR -339 210 15 1735 172 6 13 chr9 29038797 29039111 -113232333 - AluJo SINE Alu 0 312 1 417 202 142 22 chr9 29039210 29039374 -113232070 - MER5A DNA MER1_type 0 189 4 552 283 57 11 chr9 29040023 29040200 -113231244 + MIR SINE MIR 21 205 -57 274 351 0 0 chr9 29040291 29040368 -113231076 - MIR SINE MIR -179 83 7 267 300 102 37 chr9 29040479 29040708 -113230736 + MIR SINE MIR 15 261 -1 2238 109 0 0 chr9 29041497 29041799 -113229645 - AluSg SINE Alu -8 302 1 265 348 101 18 chr9 29041837 29042064 -113229380 - MIR SINE MIR -14 248 3 224 362 105 34 chr9 29042070 29042421 -113229023 - L2 LINE L2 -80 3192 2817 220 315 77 46 chr9 29042424 29042554 -113228890 + MIR SINE MIR 47 180 -82 291 269 97 48 chr9 29042736 29042881 -113228563 + MIR3 SINE MIR 54 205 -3 1002 244 8 21 chr9 29042886 29043041 -113228403 + MIR SINE MIR 32 185 -77 1323 191 50 28 chr9 29043041 29043107 -113228337 - AluJo SINE Alu -22 290 227 2405 88 0 0 chr9 29043107 29043404 -113228040 - AluY SINE Alu -14 297 1 1323 191 50 28 chr9 29043404 29043619 -113227825 - AluJo SINE Alu -85 227 3 1002 244 8 21 chr9 29043619 29043697 -113227747 + MIR SINE MIR 185 262 0 418 287 144 17 chr9 29044370 29044551 -113226893 - MIR SINE MIR -36 226 23 504 251 159 87 chr9 29044961 29045534 -113225910 - L1M4 LINE L1 -3316 2830 2217 2048 131 0 0 chr9 29046008 29046313 -113225131 - AluSx SINE Alu 0 305 1 1339 175 35 0 chr9 29046751 29046979 -113224465 + MER46A DNA MER2_type 1 236 0 306 219 14 27 chr9 29048462 29048535 -113222909 - LTR67 LTR ERVL -7 550 479 2425 120 3 32 chr9 29048719 29049093 -113222351 - THE1C LTR MaLR -12 363 1 1557 159 133 0 chr9 29049142 29049406 -113222038 + AluJb SINE Alu 1 299 -13 246 264 110 0 chr9 29050140 29050231 -113221213 - L2 LINE L2 -3 3310 3210 693 173 30 30 chr9 29050871 29051004 -113220440 - MER5A DNA MER1_type -54 135 3 683 288 162 45 chr9 29051005 29051363 -113220081 + L2 LINE L2 2870 3269 -3 912 238 16 5 chr9 29051633 29051818 -113219626 - MER91B DNA MER1_type -3 187 1 491 245 0 0 chr9 29052389 29052487 -113218957 - MER5A DNA MER1_type -83 106 9 240 59 0 0 chr9 29052509 29052543 -113218901 + (T)n Simple_repeat Simple_repeat 1 34 0 1185 137 0 0 chr9 29052566 29052727 -113218717 + FRAM SINE Alu 1 158 -18 1296 151 169 4 chr9 29053127 29053405 -113218039 - MER33 DNA MER1_type 0 324 1 21 0 0 0 chr9 29053612 29053633 -113217811 + AT_rich Low_complexity Low_complexity 1 21 0 7997 34 0 0 chr9 29053753 29054751 -113216693 - L1PA3 LINE L1 0 6155 5177 6065 147 34 13 chr9 29055320 29056254 -113215190 - L1MA9 LINE L1 0 6312 5321 2318 105 3 0 chr9 29056254 29056559 -113214885 + AluSp SINE Alu 1 306 -7 6065 147 34 13 chr9 29056559 29057330 -113214114 - L1MA9 LINE L1 -991 5321 4568 3036 238 96 27 chr9 29057674 29058862 -113212582 - L1ME LINE L1 -4816 1264 3 274 293 53 0 chr9 29059606 29059681 -113211763 + MER58A DNA MER1_type 1 79 -28 716 244 17 0 chr9 29059687 29059867 -113211577 - L1MB7 LINE L1 -36 6148 5966 1418 132 22 28 chr9 29059868 29060217 -113211227 - Tigger2 DNA MER2_type -10 2708 3 651 203 33 33 chr9 29060219 29060372 -113211072 - L1MB7 LINE L1 -212 5966 5814 509 235 167 19 chr9 29060377 29060539 -113210905 + MER58A DNA MER1_type 39 224 0 279 297 11 30 chr9 29061977 29062159 -113209285 + MIR SINE MIR 3 227 -35 1681 172 17 27 chr9 29063542 29063838 -113207606 + AluJo SINE Alu 3 295 -17 401 301 79 30 chr9 29064576 29064779 -113206665 + MIR SINE MIR 18 230 -32 1082 142 82 0 chr9 29065184 29065367 -113206077 + MER2 DNA MER2_type 147 344 -1 181 302 0 19 chr9 29065408 29065461 -113205983 - MIR3 SINE MIR -153 55 4 2502 211 47 32 chr9 29066144 29066387 -113205057 + L1ME3 LINE L1 5551 5789 -373 2326 147 15 66 chr9 29066387 29066796 -113204648 - MLT1B LTR MaLR 0 390 3 2502 211 47 32 chr9 29066796 29067153 -113204291 + L1ME3 LINE L1 5789 6160 -2 829 210 67 82 chr9 29067480 29067809 -113203635 - L2 LINE L2 -2 3311 2988 215 280 40 0 chr9 29068012 29068062 -113203382 - L2 LINE L2 -73 3199 3148 1147 207 9 4 chr9 29068064 29068291 -113203153 - MER106A DNA MER1_type -2 234 7 1340 223 49 24 chr9 29068301 29068629 -113202815 + MLT1D LTR MaLR 117 452 -53 488 338 119 15 chr9 29068859 29069202 -113202242 - L2 LINE L2 -337 2977 2599 378 237 53 41 chr9 29071858 29072027 -113199417 - HAL1 LINE L1 -7 2500 2330 846 170 44 66 chr9 29072027 29072209 -113199235 - MER5A DNA MER1_type 0 189 12 203 287 58 11 chr9 29072468 29072555 -113198889 - MIR SINE MIR -73 189 99 1533 169 24 30 chr9 29072596 29072891 -113198553 - AluJo SINE Alu -19 293 1 789 249 34 38 chr9 29074116 29074353 -113197091 - MER106A DNA MER1_type 0 236 1 261 285 154 8 chr9 29074524 29074654 -113196790 - MIR SINE MIR -46 216 68 458 217 35 9 chr9 29075056 29075171 -113196273 - L1ME LINE L1 -322 5799 5682 1008 126 73 138 chr9 29075290 29075551 -113195893 - MSTA LTR MaLR 0 428 185 23 68 0 0 chr9 29075551 29075595 -113195849 + AT_rich Low_complexity Low_complexity 1 44 0 1363 32 0 0 chr9 29075647 29075804 -113195640 - L1PA4 LINE L1 0 6155 5999 429 69 0 0 chr9 29075804 29075862 -113195582 + L1PA4 LINE L1 5929 5986 -169 1314 131 5 5 chr9 29075862 29076060 -113195384 - MSTA LTR MaLR -230 198 1 458 143 14 0 chr9 29077073 29077143 -113194301 + 5S rRNA rRNA 1 71 -50 246 268 35 3 chr9 29077330 29077456 -113193988 - L1ME4a LINE L1 -1 8041 5966 1847 135 14 17 chr9 29077597 29077886 -113193558 - AluJo SINE Alu -24 288 1 613 280 110 74 chr9 29077976 29079018 -113192426 - L1ME4a LINE L1 -344 5818 4771 523 246 66 55 chr9 29079593 29079776 -113191668 - MIR SINE MIR -73 189 5 282 278 0 67 chr9 29079888 29079978 -113191466 - MER5A DNA MER1_type -1 188 105 231 227 0 0 chr9 29080628 29080685 -113190759 + MIR SINE MIR 97 152 -62 598 289 178 0 chr9 29081103 29081300 -113190144 + MIR SINE MIR 19 250 -12 225 274 32 0 chr9 29081462 29081524 -113189920 - MER117 DNA MER1_type -133 64 1 329 257 176 22 chr9 29082882 29083104 -113188340 - HAL1b LINE L1 -31 1317 1062 210 283 0 0 chr9 29083160 29083206 -113188238 + polypyrimidine Low_complexity Low_complexity 3 48 0 237 303 0 0 chr9 29083310 29083376 -113188068 - MIR SINE MIR -123 139 74 459 182 107 41 chr9 29084028 29084149 -113187295 + MER94 DNA DNA 6 134 0 371 247 0 0 chr9 29085088 29085161 -113186283 - MER117 DNA MER1_type 0 197 125 995 199 33 0 chr9 29085883 29086064 -113185380 - MER5A DNA MER1_type 0 189 3 276 300 27 73 chr9 29086093 29086243 -113185201 + MER5A DNA MER1_type 47 189 0 1040 153 148 0 chr9 29087594 29087783 -113183661 + MER20 DNA MER1_type 2 218 -1 254 29 29 0 chr9 29089058 29089093 -113182351 + (CA)n Simple_repeat Simple_repeat 2 37 0 2213 78 0 20 chr9 29089636 29089929 -113181515 + AluSc SINE Alu 1 287 -22 330 272 0 22 chr9 29089948 29090040 -113181404 + L1MC4 LINE L1 6614 6703 -1339 33 25 0 0 chr9 29090067 29090107 -113181337 + AT_rich Low_complexity Low_complexity 1 40 0 1690 158 0 76 chr9 29090232 29090561 -113180883 - AluJo SINE Alu -8 304 1 21 0 0 0 chr9 29090720 29090741 -113180703 + AT_rich Low_complexity Low_complexity 1 21 0 349 283 19 82 chr9 29094232 29094391 -113177053 - MER5B DNA MER1_type -4 174 26 447 356 63 48 chr9 29094484 29095151 -113176293 - L2 LINE L2 -33 3239 2555 184 358 45 50 chr9 29095942 29096121 -113175323 + L2 LINE L2 2936 3113 -159 209 270 40 14 chr9 29097001 29097075 -113174369 - MIR3 SINE MIR -43 165 90 383 275 38 23 chr9 29097167 29097298 -113174146 - MIR SINE MIR -96 166 34 267 260 0 14 chr9 29097894 29097967 -113173477 + L1ME LINE L1 5801 5872 -249 2516 77 0 27 chr9 29098060 29098398 -113173046 + L1PA8 LINE L1 5775 6103 -69 21158 96 32 17 chr9 29099274 29105480 -113165964 + L1PA7 LINE L1 4 6466 -3 305 301 88 0 chr9 29105639 29105752 -113165692 + MER94 DNA DNA 1 123 -11 245 379 30 15 chr9 29105884 29106016 -113165428 - MER5A DNA MER1_type 0 189 56 234 309 122 16 chr9 29105927 29106050 -113165394 + MER5A DNA MER1_type 54 189 0 * 1981 165 40 3 chr9 29106167 29106519 -113164925 - MLT1A1 LTR MaLR 0 365 1 500 248 78 0 chr9 29107277 29107406 -113164038 - MIR3 SINE MIR -5 203 65 22 0 0 0 chr9 29108225 29108247 -113163197 + AT_rich Low_complexity Low_complexity 1 22 0 355 234 128 32 chr9 29109191 29109283 -113162161 - MER6B DNA MER2_type -659 206 124 6540 61 24 14 chr9 29109283 29110822 -113160622 + L1PA7 LINE L1 4586 6143 -11 355 234 128 32 chr9 29110822 29110917 -113160527 - MER6B DNA MER2_type -741 124 1 320 342 21 43 chr9 29111109 29111296 -113160148 + L1MA8 LINE L1 2 184 -6984 3136 234 97 24 chr9 29112176 29114234 -113157210 + L1MA8 LINE L1 1619 3540 -3627 9772 154 36 12 chr9 29114235 29117134 -113154310 + L1MA8 LINE L1 4338 7308 -4 1691 170 22 0 chr9 29117144 29117414 -113154030 + AluJo SINE Alu 1 276 -36 429 20 0 0 chr9 29117420 29117470 -113153974 + (CA)n Simple_repeat Simple_repeat 1 50 0 207 191 0 0 chr9 29117470 29117533 -113153911 + (TA)n Simple_repeat Simple_repeat 2 64 0 41496 45 1 1 chr9 29118117 29124267 -113147177 + L1PA4 LINE L1 1 6149 -6 597 340 52 5 chr9 29126392 29126604 -113144840 - MIR SINE MIR -31 231 10 852 209 94 0 chr9 29127885 29128076 -113143368 - MER3 DNA MER1_type 0 209 1 734 224 88 19 chr9 29128085 29128290 -113143154 - MER58A DNA MER1_type -2 222 4 524 256 65 65 chr9 29129253 29129499 -113141945 + MIR SINE MIR 7 252 -10 216 0 0 0 chr9 29129758 29129782 -113141662 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21609 116 29 95 chr9 29129926 29134560 -113136884 + L1PA7 LINE L1 3 4329 -1817 706 12 0 0 chr9 29134560 29134646 -113136798 - AluSg/x SINE Alu -5 304 219 7470 84 23 0 chr9 29134646 29136450 -113134994 + L1PA7 LINE L1 4328 6154 0 223 273 178 45 chr9 29136556 29136755 -113134689 - MIR SINE MIR -14 248 16 231 304 51 0 chr9 29136952 29137031 -113134413 + MIR SINE MIR 59 141 -121 580 307 155 32 chr9 29138705 29139748 -113131696 - L2 LINE L2 -1 3312 1851 240 280 215 26 chr9 29139935 29140274 -113131170 - L2 LINE L2 -1542 1772 1370 226 279 27 45 chr9 29140370 29140481 -113130963 - L2 LINE L2 -2384 930 822 566 279 46 63 chr9 29141237 29141474 -113129970 - MIR SINE MIR -28 234 2 762 258 57 0 chr9 29141807 29142001 -113129443 + MIR SINE MIR 11 215 -47 240 154 0 0 chr9 29142116 29142168 -113129276 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 442 287 102 0 chr9 29142666 29142823 -113128621 - MIR SINE MIR -74 188 16 296 272 192 48 chr9 29143207 29143332 -113128112 + MER5A DNA MER1_type 47 189 0 2883 73 13 0 chr9 29143457 29143840 -113127604 - L1PA8 LINE L1 -4 6168 5781 2316 87 7 0 chr9 29144021 29144309 -113127135 - AluSc SINE Alu -19 290 1 1948 118 40 0 chr9 29144847 29145150 -113126294 + AluSx SINE Alu 1 314 0 1463 199 52 3 chr9 29145504 29145791 -113125653 + AluJb SINE Alu 1 301 -11 253 108 0 0 chr9 29146170 29146207 -113125237 - AluSq SINE Alu -150 153 117 649 231 28 77 chr9 29146512 29146656 -113124788 + MER106A DNA MER1_type 1 130 -106 1095 58 0 0 chr9 29146656 29146794 -113124650 - L1PA3 LINE L1 0 6155 6018 649 231 28 77 chr9 29146794 29146896 -113124548 + MER106A DNA MER1_type 130 235 -1 2193 120 0 0 chr9 29147453 29147752 -113123692 + AluSx SINE Alu 3 301 -11 352 258 83 50 chr9 29147858 29147978 -113123466 - MIR SINE MIR -59 203 80 25 0 0 0 chr9 29148123 29148148 -113123296 + AT_rich Low_complexity Low_complexity 1 25 0 332 268 122 30 chr9 29148148 29148312 -113123132 - MIR SINE MIR -13 249 71 832 303 122 43 chr9 29148533 29149213 -113122231 + L1M4 LINE L1 16 749 -5793 442 144 19 19 chr9 29149212 29149316 -113122128 + L1ME LINE L1 3597 3700 -2446 * 792 218 5 0 chr9 29149342 29149539 -113121905 + L1MB4 LINE L1 5761 5958 -222 1235 121 12 0 chr9 29149541 29149714 -113121730 + AluSc SINE Alu 135 309 0 1233 160 27 0 chr9 29149716 29149941 -113121503 + L1MB4 LINE L1 5944 6174 -6 1185 251 47 12 chr9 29149946 29150368 -113121076 + L1ME LINE L1 3673 4109 -2037 1926 121 19 56 chr9 29152347 29152669 -113118775 + AluSx SINE Alu 1 310 -2 441 208 113 24 chr9 29153312 29153480 -113117964 + HAL1b LINE L1 278 460 -888 380 245 85 89 chr9 29153475 29153757 -113117687 + L1ME LINE L1 5377 5657 -464 * 305 161 0 0 chr9 29153815 29153871 -113117573 - AluJb SINE Alu -127 175 120 441 236 64 0 chr9 29154005 29154115 -113117329 - MIR SINE MIR -90 172 56 2411 91 0 0 chr9 29154175 29154482 -113116962 - AluSc SINE Alu -2 307 1 2335 225 73 13 chr9 29154618 29155232 -113116212 + MER82 DNA MER2_type 2 652 -1 2098 111 17 0 chr9 29155742 29156040 -113115404 + AluSx SINE Alu 1 303 -9 645 203 127 19 chr9 29159662 29159949 -113111495 + MER41B LTR ERV1 100 476 -159 829 244 99 23 chr9 29159965 29160310 -113111134 + MER66A LTR ERV1 98 468 -10 219 36 0 0 chr9 29160901 29160929 -113110515 + (CTA)n Simple_repeat Simple_repeat 2 29 0 297 295 188 13 chr9 29161727 29161876 -113109568 + MIR SINE MIR 85 259 -3 2167 113 10 10 chr9 29161990 29162292 -113109152 - AluSg SINE Alu -8 302 1 2518 74 0 0 chr9 29162609 29162918 -113108526 + AluSc SINE Alu 1 309 0 2510 78 0 0 chr9 29163881 29164189 -113107255 - AluSc SINE Alu -1 308 1 276 227 189 38 chr9 29165285 29165417 -113106027 - MIR SINE MIR -64 198 47 496 173 188 8 chr9 29166278 29166411 -113105033 + MIR SINE MIR 92 248 -14 2141 93 0 31 chr9 29166540 29166831 -113104613 - AluSx SINE Alu -8 304 23 189 229 0 0 chr9 29166891 29166926 -113104518 - L2 LINE L2 -1749 1565 1531 439 106 106 24 chr9 29167072 29167157 -113104287 + L1MC2 LINE L1 5514 5605 -2180 290 122 41 0 chr9 29167162 29167211 -113104233 - AluJ/FLAM SINE Alu -241 61 11 3743 135 56 7 chr9 29167222 29167918 -113103526 + L1MC2 LINE L1 5602 6331 -13 256 83 0 0 chr9 29168194 29168230 -113103214 - AluJo SINE Alu -14 288 253 1052 174 0 6 chr9 29168230 29168397 -113103047 - AluJo SINE Alu -146 166 1 3141 197 11 14 chr9 29168579 29169224 -113102220 + MER82 DNA MER2_type 1 643 -10 340 259 22 29 chr9 29169276 29169415 -113102029 + (CATA)n Simple_repeat Simple_repeat 2 139 0 187 51 0 51 chr9 29169816 29169855 -113101589 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 218 315 22 22 chr9 29169895 29169984 -113101460 - L2 LINE L2 -2 3311 3223 22 0 0 0 chr9 29173245 29173267 -113098177 + AT_rich Low_complexity Low_complexity 1 22 0 401 276 98 64 chr9 29174190 29174300 -113097144 + L1M4 LINE L1 4912 5017 -1129 2598 36 3 0 chr9 29174300 29174603 -113096841 + AluY SINE Alu 1 304 -7 401 276 98 64 chr9 29174603 29174756 -113096688 + L1M4 LINE L1 5017 5184 -962 1939 136 0 24 chr9 29174767 29175061 -113096383 + AluJb SINE Alu 1 287 -25 269 209 67 19 chr9 29175149 29175254 -113096190 + L1M LINE L1 5255 5364 -2444 1958 158 64 13 chr9 29176170 29176562 -113094882 - LTR3 LTR ERVK -16 416 5 1686 132 147 0 chr9 29176683 29176955 -113094489 + AluSx SINE Alu 1 312 0 267 143 20 51 chr9 29177096 29177194 -113094250 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 5017 103 13 4 chr9 29177207 29177985 -113093459 - L1PB3 LINE L1 -2 6152 5368 27 62 0 0 chr9 29177991 29178039 -113093405 + AT_rich Low_complexity Low_complexity 1 48 0 268 250 16 16 chr9 29178855 29178919 -113092525 + L2 LINE L2 3191 3254 -18 842 172 0 8 chr9 29179176 29179310 -113092134 + FLAM_C SINE Alu 1 133 0 2497 165 11 15 chr9 29179373 29179834 -113091610 + MLT1C LTR MaLR 1 459 -8 388 304 22 22 chr9 29180174 29180309 -113091135 + MIR SINE MIR 18 152 -110 2278 110 0 0 chr9 29180536 29180835 -113090609 - AluSx SINE Alu -9 303 5 679 225 0 0 chr9 29181080 29181222 -113090222 + MLT1H1 LTR MaLR 414 555 0 2226 56 3 28 chr9 29181444 29181775 -113089669 + AluY SINE Alu 1 324 0 2045 142 13 0 chr9 29182587 29182889 -113088555 - AluSx SINE Alu -6 306 1 22 35 0 0 chr9 29183344 29183373 -113088071 + AT_rich Low_complexity Low_complexity 1 29 0 352 298 7 43 chr9 29183956 29184097 -113087347 + MIR SINE MIR 17 152 -110 487 319 80 48 chr9 29184228 29184704 -113086740 - LTR16C LTR ERVL 0 491 1 311 336 29 7 chr9 29185685 29185822 -113085622 - ERVL LTR ERVL -4415 581 442 296 217 43 0 chr9 29186100 29186169 -113085275 + LTR16C LTR ERVL 258 329 -162 2449 151 69 0 chr9 29186325 29186748 -113084696 + LTR47A LTR ERVL 1 452 0 508 309 61 64 chr9 29186968 29187327 -113084117 - HAL1 LINE L1 -6 2501 2144 837 259 67 4 chr9 29187580 29187819 -113083625 - MER76 LTR ERV -430 258 5 612 294 42 42 chr9 29187827 29188211 -113083233 - ERVL LTR ERVL -1910 3854 3471 1975 137 49 23 chr9 29188569 29188957 -113082487 + L1MA8 LINE L1 5889 6286 -5 1692 203 45 5 chr9 29189050 29189429 -113082015 + MER63B DNA MER1_type 43 436 0 325 261 61 9 chr9 29190166 29190281 -113081163 - MER103 DNA DNA -43 123 3 22 0 0 0 chr9 29190985 29191007 -113080437 + AT_rich Low_complexity Low_complexity 1 22 0 703 218 202 16 chr9 29191034 29191222 -113080222 + MIR SINE MIR 2 224 -38 201 327 0 0 chr9 29191372 29191427 -113080017 + L2 LINE L2 3199 3253 -19 618 282 94 14 chr9 29193110 29193323 -113078121 + MIR SINE MIR 17 246 -16 22 56 0 0 chr9 29193352 29193388 -113078056 + AT_rich Low_complexity Low_complexity 1 36 0 1175 246 137 19 chr9 29193446 29193868 -113077576 - L2 LINE L2 0 3313 2842 2358 79 3 3 chr9 29194816 29195121 -113076323 + AluY SINE Alu 1 305 -6 342 304 53 66 chr9 29195510 29195753 -113075691 - Charlie8 DNA MER1_type -2161 256 17 21 0 0 0 chr9 29195975 29195996 -113075448 + AT_rich Low_complexity Low_complexity 1 21 0 246 326 10 20 chr9 29196097 29196195 -113075249 - MIR SINE MIR -119 143 47 20547 99 10 45 chr9 29196439 29197553 -113073891 - L1PA7 LINE L1 0 6154 5002 2326 90 0 3 chr9 29197553 29197853 -113073591 - AluY SINE Alu -12 299 1 20547 99 10 45 chr9 29197853 29198670 -113072774 - L1PA7 LINE L1 -1152 5002 4158 2362 72 3 7 chr9 29198670 29198974 -113072470 - AluY SINE Alu 0 311 9 20547 99 10 45 chr9 29198974 29200881 -113070563 - L1PA7 LINE L1 -1996 4158 2185 2190 125 0 13 chr9 29200881 29201193 -113070251 - AluY SINE Alu -3 308 1 20547 99 10 45 chr9 29201193 29203812 -113067632 - L1PA7 LINE L1 -3969 2185 12 739 147 26 64 chr9 29205524 29205680 -113065764 - MER106A DNA MER1_type -40 196 47 1142 227 69 119 chr9 29206046 29206694 -113064750 + L1MC4 LINE L1 7324 7939 -103 615 221 14 14 chr9 29206697 29206837 -113064607 + FLAM_A SINE Alu 3 142 0 393 256 182 84 chr9 29209521 29209927 -113061517 + Charlie8 DNA MER1_type 41 486 -1931 1660 163 31 17 chr9 29210745 29211039 -113060405 - AluJb SINE Alu -14 298 1 282 329 84 7 chr9 29211473 29211628 -113059816 - MIR SINE MIR -90 172 6 190 255 39 20 chr9 29213428 29213479 -113057965 - MIR SINE MIR -74 134 83 2189 73 63 3 chr9 29213566 29213853 -113057591 - AluY SINE Alu -7 304 1 423 282 14 34 chr9 29213990 29214167 -113057277 - MIR3 SINE MIR -2 206 34 188 317 122 66 chr9 29214414 29214717 -113056727 + L2 LINE L2 2937 3256 -16 441 206 29 0 chr9 29214850 29214952 -113056492 - MIR SINE MIR -87 175 71 207 269 0 0 chr9 29217296 29217348 -113054096 + A-rich Low_complexity Low_complexity 4 55 0 495 285 149 0 chr9 29218266 29218480 -113052964 - MIR SINE MIR -12 250 5 362 241 102 0 chr9 29220465 29220573 -113050871 - MIR SINE MIR -93 169 51 1197 234 58 0 chr9 29220629 29220890 -113050554 + MER58 DNA MER1_type 1 276 -65 5043 70 12 20 chr9 29221174 29222244 -113049200 + SVA Other Other 1 1386 0 767 133 17 0 chr9 29222725 29222845 -113048599 + L1MB3 LINE L1 6062 6183 0 21 0 0 0 chr9 29224149 29224170 -113047274 + AT_rich Low_complexity Low_complexity 1 21 0 438 264 178 0 chr9 29224183 29224391 -113047053 + MER102a DNA MER1_type 77 321 -9 1790 197 14 32 chr9 29224714 29225084 -113046360 + MLT1A1 LTR MaLR 1 363 -2 584 289 67 0 chr9 29225096 29225290 -113046154 + MIR SINE MIR 28 234 -28 2301 113 0 3 chr9 29225461 29225762 -113045682 + AluSx SINE Alu 1 300 -12 2406 125 31 0 chr9 29226400 29226751 -113044693 + Tigger3(Golem) DNA MER2_type 2667 3028 -1 21 0 0 0 chr9 29227052 29227073 -113044371 + AT_rich Low_complexity Low_complexity 1 21 0 575 263 42 46 chr9 29227073 29227119 -113044325 + MLT1F1 LTR MaLR 10 55 -512 2287 119 0 0 chr9 29227119 29227431 -113044013 + AluSx SINE Alu 1 312 0 575 263 42 46 chr9 29227431 29227601 -113043843 + MLT1F1 LTR MaLR 55 225 -342 727 212 20 7 chr9 29228722 29228873 -113042571 + MER3 DNA MER1_type 1 153 -56 468 219 20 55 chr9 29228916 29229062 -113042382 - L1ME4a LINE L1 -3 6118 5978 304 105 18 18 chr9 29229097 29229154 -113042290 - L1ME4a LINE L1 -219 5902 5846 2414 89 0 0 chr9 29229649 29229951 -113041493 - AluSq SINE Alu -11 302 1 228 214 171 0 chr9 29230099 29230200 -113041244 - MIR3 SINE MIR -20 188 67 1877 126 37 4 chr9 29230869 29231140 -113040304 + AluJb SINE Alu 23 302 -10 182 161 0 0 chr9 29231483 29231514 -113039930 + MER5C DNA MER1_type 1 31 -293 600 223 51 25 chr9 29231557 29231714 -113039730 + MER103 DNA DNA 4 164 -2 462 218 204 20 chr9 29231915 29232062 -113039382 + MER5A DNA MER1_type 9 182 -7 274 295 11 21 chr9 29232082 29232177 -113039267 - MER5A DNA MER1_type -61 128 35 428 232 0 0 chr9 29233000 29233082 -113038362 + MER81 DNA DNA 1 82 -32 201 318 159 0 chr9 29233419 29233545 -113037899 - L2 LINE L2 -8 3264 3119 453 269 151 11 chr9 29233691 29233877 -113037567 - MIR SINE MIR -49 213 2 2102 64 0 11 chr9 29234296 29234563 -113036881 - AluY SINE Alu 0 311 48 216 0 0 0 chr9 29235870 29235894 -113035550 + (TA)n Simple_repeat Simple_repeat 2 25 0 2376 178 93 34 chr9 29236008 29236518 -113034926 + MER74A LTR ERVL 1 544 -14 1445 170 31 69 chr9 29236518 29236836 -113034608 + AluJo SINE Alu 1 306 -6 2376 178 93 34 chr9 29236836 29236852 -113034592 + MER74A LTR ERVL 544 558 0 245 259 241 0 chr9 29237305 29237413 -113034031 + L2 LINE L2 3180 3313 0 817 289 22 33 chr9 29238131 29238404 -113033040 - Charlie8 DNA MER1_type -2141 276 7 398 315 125 5 chr9 29238708 29238908 -113032536 + MIR SINE MIR 26 249 -13 2209 103 3 17 chr9 29238970 29239291 -113032153 + AluSx SINE Alu 1 312 0 252 338 103 28 chr9 29239886 29240031 -113031413 - MIR SINE MIR -79 183 28 611 275 97 14 chr9 29240319 29240559 -113030885 - MIR SINE MIR 0 262 4 2358 79 23 0 chr9 29242013 29242317 -113029127 - AluY SINE Alu 0 311 1 254 306 36 18 chr9 29242328 29242439 -113029005 - MIR SINE MIR -122 140 28 1851 156 0 11 chr9 29242511 29242794 -113028650 - AluJo SINE Alu -32 280 1 295 273 0 0 chr9 29243184 29243261 -113028183 - MER103 DNA DNA -49 117 41 356 303 17 80 chr9 29243279 29243517 -113027927 + MIR SINE MIR 6 228 -34 180 111 0 0 chr9 29244106 29244133 -113027311 + (T)n Simple_repeat Simple_repeat 1 27 0 229 281 9 53 chr9 29245750 29245864 -113025580 + L2 LINE L2 3133 3241 -31 272 362 35 9 chr9 29245933 29246049 -113025395 - MIR3 SINE MIR -80 128 10 270 303 53 30 chr9 29246238 29246370 -113025074 + MIR SINE MIR 58 192 -70 234 0 0 0 chr9 29246933 29246959 -113024485 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 429 141 0 0 chr9 29247069 29247140 -113024304 + (CA)n Simple_repeat Simple_repeat 2 72 0 261 374 80 20 chr9 29248123 29248372 -113023072 + L2 LINE L2 2552 2815 -499 289 305 0 73 chr9 29248450 29248601 -113022843 + L2 LINE L2 2915 3054 -218 495 224 0 22 chr9 29249177 29249311 -113022133 + L1MA9 LINE L1 6157 6287 -25 603 198 0 0 chr9 29249323 29249439 -113022005 - AluSg/x SINE Alu -1 308 193 252 241 0 0 chr9 29249960 29250018 -113021426 - AluS SINE Alu -242 58 1 2141 193 53 14 chr9 29250018 29250641 -113020803 - L1M4c LINE L1 -5678 706 24 256 329 60 27 chr9 29250972 29251121 -113020323 - MLT1I LTR MaLR -255 154 1 219 331 70 14 chr9 29251324 29251456 -113019988 + L2 LINE L2 3163 3305 -8 1876 189 11 50 chr9 29251456 29251613 -113019831 + MLT1A1 LTR MaLR 1 163 -202 2329 105 3 0 chr9 29251613 29251917 -113019527 + AluSp SINE Alu 1 305 -8 1876 189 11 50 chr9 29251917 29252139 -113019305 + MLT1A1 LTR MaLR 163 365 0 684 254 39 93 chr9 29253008 29253287 -113018157 - MER102a DNA MER1_type -6 324 61 28 29 0 0 chr9 29253368 29253403 -113018041 + AT_rich Low_complexity Low_complexity 1 35 0 4617 178 116 6 chr9 29253407 29254405 -113017039 + L1MC3 LINE L1 6676 7783 -2 656 165 338 0 chr9 29254525 29254658 -113016786 - MER45A DNA AcHobo 0 178 1 192 242 84 151 chr9 29255185 29255217 -113016227 - MIR SINE MIR -67 141 108 1814 195 51 38 chr9 29255217 29255611 -113015833 + MER57A LTR ERV1 1 399 -4 192 242 84 151 chr9 29255611 29255705 -113015739 - MIR SINE MIR -100 108 38 622 262 160 39 chr9 29256007 29256289 -113015155 + MER102b DNA MER1_type 1 316 -25 272 365 17 0 chr9 29256833 29256948 -113014496 + Tigger8 DNA MER2_type 2 118 -548 608 211 77 0 chr9 29257376 29257532 -113013912 - L1ME4a LINE L1 -85 6036 5869 458 216 288 7 chr9 29257935 29258074 -113013370 - MER5B DNA MER1_type 0 178 1 930 227 11 5 chr9 29258083 29258268 -113013176 + MER5A DNA MER1_type 2 187 -2 578 247 57 25 chr9 29258336 29258494 -113012950 + MIR SINE MIR 26 188 -74 666 211 106 0 chr9 29258891 29259052 -113012392 - MER5A DNA MER1_type 0 189 12 446 258 47 12 chr9 29259408 29259574 -113011870 - MIR SINE MIR -48 214 44 289 257 69 83 chr9 29260213 29260357 -113011087 - MIR3 SINE MIR -64 144 3 474 247 53 27 chr9 29260384 29260534 -113010910 + L3 LINE CR1 1357 1510 -67 262 313 106 12 chr9 29260542 29260702 -113010742 - MER5B DNA MER1_type -3 175 1 546 260 90 19 chr9 29260784 29260993 -113010451 - MIR SINE MIR 0 262 36 2112 73 95 0 chr9 29261649 29261923 -113009521 - AluSc SINE Alu -9 300 1 256 235 0 0 chr9 29262620 29262671 -113008773 + MIR3 SINE MIR 151 201 -7 1696 176 3 7 chr9 29263036 29263320 -113008124 - AluJo SINE Alu -17 295 13 235 281 58 41 chr9 29263392 29263513 -113007931 + MIR SINE MIR 27 149 -113 180 0 0 0 chr9 29264104 29264124 -113007320 + (TA)n Simple_repeat Simple_repeat 2 21 0 470 266 165 32 chr9 29264491 29264709 -113006735 + MIR SINE MIR 16 262 0 430 276 35 9 chr9 29265350 29265466 -113005978 - MER103 DNA DNA -45 121 3 213 346 39 0 chr9 29265688 29265766 -113005678 + L3b LINE CR1 1476 1556 -27 248 282 51 26 chr9 29266690 29266768 -113004676 - L2 LINE L2 -10 3262 3183 297 280 95 52 chr9 29267481 29267722 -113003722 + MIR SINE MIR 3 262 0 584 268 108 21 chr9 29268766 29268960 -113002484 + MIR SINE MIR 46 256 -6 1179 211 14 9 chr9 29269304 29269517 -113001927 + MER20 DNA MER1_type 4 217 -2 1455 112 10 10 chr9 29269856 29270062 -113001382 - L1PB1 LINE L1 -3 6148 5943 852 295 135 50 chr9 29270074 29270522 -113000922 + L2 LINE L2 2332 2741 -572 1081 172 50 0 chr9 29270522 29270702 -113000742 + MER5A DNA MER1_type 1 189 0 852 295 135 50 chr9 29270702 29271154 -113000290 + L2 LINE L2 2741 3313 0 266 304 27 27 chr9 29271184 29271332 -113000112 - MER117 DNA MER1_type 0 197 50 32 0 0 0 chr9 29271332 29271364 -113000080 + AT_rich Low_complexity Low_complexity 1 32 0 206 105 26 0 chr9 29271441 29271479 -112999965 + (TA)n Simple_repeat Simple_repeat 1 39 0 1185 135 19 53 chr9 29271479 29271687 -112999757 - AluSg/x SINE Alu -27 285 85 901 143 0 0 chr9 29271755 29271888 -112999556 - FLAM_C SINE Alu 0 133 1 192 265 59 29 chr9 29271935 29272003 -112999441 - MIR SINE MIR -166 96 27 1816 161 92 18 chr9 29272107 29272443 -112999001 + MLT1A1 LTR MaLR 1 361 -4 504 271 39 19 chr9 29273431 29273586 -112997858 + MER5A DNA MER1_type 7 164 -25 374 226 29 20 chr9 29274123 29274225 -112997219 + MIR SINE MIR 54 156 -106 234 0 0 0 chr9 29274759 29274785 -112996659 + (TG)n Simple_repeat Simple_repeat 2 27 0 705 257 101 25 chr9 29275020 29275257 -112996187 - MIR SINE MIR -4 258 4 1354 173 47 11 chr9 29276553 29276831 -112994613 + L1MA8 LINE L1 6004 6291 0 407 303 104 26 chr9 29277111 29277342 -112994102 + MIR SINE MIR 2 250 -12 373 198 0 37 chr9 29277838 29277919 -112993525 + LTR67 LTR ERVL 478 555 -2 256 289 97 9 chr9 29278250 29278364 -112993080 - MIR3 SINE MIR -45 163 40 578 205 89 0 chr9 29279193 29279305 -112992139 - MER20 DNA MER1_type 0 219 98 340 310 29 58 chr9 29279748 29279922 -112991522 + MIR SINE MIR 86 254 -8 236 238 12 71 chr9 29280291 29280375 -112991069 + MER116 DNA Mariner 2 80 0 439 322 106 28 chr9 29281071 29281506 -112989938 + L2 LINE L2 2230 2698 -616 562 298 85 52 chr9 29281665 29282085 -112989359 + L2 LINE L2 2796 3227 -45 589 280 106 5 chr9 29283376 29283583 -112987861 + MIR SINE MIR 23 250 -12 469 287 47 13 chr9 29283660 29283810 -112987634 + L2 LINE L2 3159 3313 0 187 308 0 0 chr9 29283891 29283943 -112987501 + L2 LINE L2 3262 3313 0 810 134 0 17 chr9 29284905 29285024 -112986420 - AluSg SINE Alu 0 312 196 1072 114 0 0 chr9 29285025 29285165 -112986279 - AluSg SINE Alu -170 140 1 5609 147 23 44 chr9 29285176 29285731 -112985713 - L1MA4 LINE L1 -1 6299 5734 2178 128 3 6 chr9 29285731 29286044 -112985400 - AluSx SINE Alu 0 312 1 5609 147 23 44 chr9 29286044 29286482 -112984962 - L1MA4 LINE L1 -566 5734 5327 2450 100 0 0 chr9 29286482 29286792 -112984652 - AluSg SINE Alu 0 310 1 5609 147 23 44 chr9 29286792 29287042 -112984402 - L1MA4 LINE L1 -973 5327 5073 4007 193 125 5 chr9 29287010 29288219 -112983225 + L1MA4 LINE L1 3633 5085 -1061 * 2163 122 10 0 chr9 29288220 29288523 -112982921 - AluSq SINE Alu -7 306 1 500 286 119 0 chr9 29290351 29290536 -112980908 - MIR SINE MIR -1 261 55 428 289 8 8 chr9 29290531 29290652 -112980792 - L2 LINE L2 0 3313 3193 * 4347 154 23 12 chr9 29290751 29291499 -112979945 + L1MB4 LINE L1 5425 6180 0 339 75 19 0 chr9 29292141 29292194 -112979250 - L1ME4a LINE L1 0 6121 6068 408 254 56 0 chr9 29292248 29292374 -112979070 - L1ME4a LINE L1 -206 5915 5783 217 196 0 36 chr9 29293027 29293067 -112978377 + GA-rich Low_complexity Low_complexity 2 41 -14 2006 132 40 3 chr9 29293067 29293392 -112978052 + L1MC2 LINE L1 5999 6335 -9 217 196 0 36 chr9 29293392 29293407 -112978037 + GA-rich Low_complexity Low_complexity 41 55 0 205 243 0 0 chr9 29293925 29293962 -112977482 + polypyrimidine Low_complexity Low_complexity 4 40 0 434 311 105 38 chr9 29294901 29295245 -112976199 - L2 LINE L2 -583 2731 2365 2305 83 30 7 chr9 29296246 29296547 -112974897 - AluSx SINE Alu -4 308 1 463 238 19 44 chr9 29296697 29296857 -112974587 + L1MD3 LINE L1 7826 7981 -14 1634 161 76 17 chr9 29297931 29298222 -112973222 - AluJo SINE Alu -4 308 1 2401 67 0 3 chr9 29298468 29298794 -112972650 + AluY SINE Alu 1 325 0 253 241 253 0 chr9 29299064 29299143 -112972301 - MIR SINE MIR -3 259 161 1971 96 6 93 chr9 29299167 29299499 -112971945 + AluSx SINE Alu 1 303 -9 8812 181 19 4 chr9 29299502 29301842 -112969602 + L1PB1 LINE L1 3414 5791 -360 432 0 0 0 chr9 29301935 29301983 -112969461 + (TA)n Simple_repeat Simple_repeat 2 49 0 2431 138 0 0 chr9 29301983 29302339 -112969105 + L1PB1 LINE L1 5796 6151 0 2316 88 0 3 chr9 29302483 29302778 -112968666 - AluSq SINE Alu -19 294 1 1116 266 117 39 chr9 29302857 29303478 -112967966 + L2 LINE L2 2634 3313 0 206 174 43 22 chr9 29304486 29304532 -112966912 - L2 LINE L2 -5 3267 3221 274 262 0 0 chr9 29304540 29304601 -112966843 + MIR SINE MIR 85 145 -63 1038 237 40 16 chr9 29305201 29305450 -112965994 - MIR SINE MIR -7 255 1 2401 70 10 0 chr9 29306482 29306781 -112964663 + AluSp SINE Alu 3 304 -9 944 201 21 16 chr9 29306807 29307001 -112964443 - MER46C DNA MER2_type -29 309 115 543 256 156 15 chr9 29307415 29307614 -112963830 - MIR SINE MIR -18 244 18 298 297 117 0 chr9 29309509 29309620 -112961824 - L2 LINE L2 0 3272 3149 445 246 157 15 chr9 29309626 29309760 -112961684 - MER5A DNA MER1_type -2 187 35 225 318 84 9 chr9 29309840 29309947 -112961497 - L2 LINE L2 -243 3029 2915 186 301 48 39 chr9 29313828 29313931 -112957513 + L2 LINE L2 3164 3267 -5 212 321 0 0 chr9 29314013 29314066 -112957378 - L3b LINE CR1 -9 1574 1522 30 59 0 0 chr9 29314603 29314654 -112956790 + AT_rich Low_complexity Low_complexity 1 51 0 791 285 182 27 chr9 29315603 29316239 -112955205 + L2 LINE L2 1901 2635 -679 1926 204 90 51 chr9 29316239 29316434 -112955010 + MER34C LTR ERV1 1 187 -398 375 23 0 0 chr9 29316434 29316478 -112954966 + (TC)n Simple_repeat Simple_repeat 1 44 0 1926 204 90 51 chr9 29316478 29316835 -112954609 + MER34C LTR ERV1 187 575 -10 521 317 91 43 chr9 29316848 29316970 -112954474 + L2 LINE L2 2643 2758 -555 2072 126 0 3 chr9 29316970 29317287 -112954157 - AluSq SINE Alu 0 316 1 521 317 91 43 chr9 29317287 29317549 -112953895 + L2 LINE L2 2758 3045 -268 356 259 80 0 chr9 29317664 29317776 -112953668 - L2 LINE L2 0 3313 3193 277 321 43 62 chr9 29317755 29317917 -112953527 + L2 LINE L2 3107 3265 -7 * 404 305 50 93 chr9 29318110 29318655 -112952789 - L2 LINE L2 -134 3179 2661 218 246 210 29 chr9 29320452 29320590 -112950854 - MIR SINE MIR 0 262 100 212 83 0 28 chr9 29320774 29320810 -112950634 + (CATA)n Simple_repeat Simple_repeat 4 38 0 228 250 44 0 chr9 29321222 29321290 -112950154 + MIR SINE MIR 74 144 -118 1871 141 17 14 chr9 29322243 29322533 -112948911 - MER1B DNA MER1_type 0 339 49 * 3796 148 43 7 chr9 29322525 29323128 -112948316 - Tigger7 DNA MER2_type -107 626 2 1892 173 68 20 chr9 29323277 29323677 -112947767 + Charlie1 DNA MER1_type 2343 2761 0 275 212 35 12 chr9 29323728 29323813 -112947631 + L2 LINE L2 3108 3194 -119 350 219 170 81 chr9 29323822 29324231 -112947213 + LTR33A LTR ERVL 1 509 -14 1044 167 44 0 chr9 29324394 29324574 -112946870 - MER5A DNA MER1_type -1 188 1 232 219 61 49 chr9 29325302 29325384 -112946060 - MER117 DNA MER1_type -16 181 99 202 139 0 28 chr9 29325505 29325541 -112945903 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1087 111 6 11 chr9 29325541 29325721 -112945723 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 568 258 113 28 chr9 29326056 29326269 -112945175 + MIR SINE MIR 31 261 -1 484 274 48 67 chr9 29326567 29326775 -112944669 - MIR SINE MIR -8 254 51 428 293 133 16 chr9 29328048 29328236 -112943208 - MIR SINE MIR -6 256 47 732 246 127 31 chr9 29329527 29329704 -112941740 + MIR SINE MIR 13 218 -44 2351 114 42 33 chr9 29329704 29330065 -112941379 - THE1B LTR MaLR 0 364 1 732 246 127 31 chr9 29330065 29330115 -112941329 + MIR SINE MIR 218 262 0 449 242 142 64 chr9 29330744 29330963 -112940481 - MIR SINE MIR -4 258 23 2069 129 0 16 chr9 29331079 29331390 -112940054 + AluSx SINE Alu 1 306 -6 232 301 269 0 chr9 29331650 29331743 -112939701 + L2 LINE L2 3196 3313 0 198 0 0 0 chr9 29331938 29331960 -112939484 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 403 318 76 42 chr9 29332071 29332307 -112939137 + MIR SINE MIR 8 251 -11 375 89 0 0 chr9 29333565 29333621 -112937823 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 231 357 63 16 chr9 29333714 29333840 -112937604 - L2 LINE L2 -223 3049 2918 623 122 70 0 chr9 29333915 29334030 -112937414 + L1MA8 LINE L1 5270 5392 -899 * 1933 132 12 35 chr9 29334020 29334362 -112937082 + L1MA8 LINE L1 5759 6092 -199 285 294 15 59 chr9 29334365 29334501 -112936943 + MER5A DNA MER1_type 55 184 -5 599 158 211 0 chr9 29334567 29334700 -112936744 - MER103 DNA DNA -1 165 5 393 229 0 12 chr9 29335687 29335770 -112935674 - L2 LINE L2 0 3313 3232 271 284 15 0 chr9 29336287 29336354 -112935090 - MER113 DNA MER1_type? 0 521 454 222 184 0 0 chr9 29337737 29337775 -112933669 + GA-rich Low_complexity Low_complexity 1 38 0 257 248 53 121 chr9 29337816 29338022 -112933422 + MLT1K LTR MaLR 392 583 -5 1160 164 34 29 chr9 29338095 29338303 -112933141 + MER3 DNA MER1_type 1 209 0 324 308 26 43 chr9 29338416 29338533 -112932911 - MIR3 SINE MIR -84 124 10 23 0 0 0 chr9 29339819 29339842 -112931602 + AT_rich Low_complexity Low_complexity 1 23 0 474 143 0 0 chr9 29339919 29339982 -112931462 + AluJb SINE Alu 183 245 -67 1178 171 9 32 chr9 29339982 29340199 -112931245 - AluJb SINE Alu -57 255 44 247 150 0 0 chr9 29340232 29340272 -112931172 - MIR SINE MIR -111 151 112 251 283 0 0 chr9 29340711 29340771 -112930673 - MER5A DNA MER1_type -126 63 4 297 216 0 0 chr9 29340790 29340841 -112930603 + MER5A DNA MER1_type 52 102 -87 198 0 0 0 chr9 29341263 29341285 -112930159 + (A)n Simple_repeat Simple_repeat 1 22 0 422 336 34 0 chr9 29341386 29341505 -112929939 - L2 LINE L2 -1 3271 3149 220 216 20 0 chr9 29342188 29342239 -112929205 + L2 LINE L2 3221 3272 0 440 250 63 28 chr9 29344638 29344784 -112926660 - MIR SINE MIR -68 140 34 354 240 55 115 chr9 29344950 29345065 -112926379 + MIR SINE MIR 25 125 -137 1931 156 17 3 chr9 29345065 29345366 -112926078 + AluJb SINE Alu 1 305 -7 354 240 55 115 chr9 29345366 29345450 -112925994 + MIR SINE MIR 125 212 -50 2987 82 0 0 chr9 29346024 29346379 -112925065 - THE1A LTR MaLR 0 355 1 12525 83 19 0 chr9 29346379 29347930 -112923514 - THE1A-int LTR MaLR 0 1580 1 2913 84 3 3 chr9 29347930 29348285 -112923159 - THE1A LTR MaLR 0 355 1 372 262 95 42 chr9 29348592 29348760 -112922684 + MIR SINE MIR 31 207 -55 300 381 101 0 chr9 29349961 29350100 -112921344 + L2 LINE L2 3107 3259 -13 840 141 7 7 chr9 29350518 29350653 -112920791 - AluJo SINE Alu -177 135 1 295 322 51 79 chr9 29350941 29351118 -112920326 - MIR3 SINE MIR -25 183 12 1501 171 29 44 chr9 29351190 29351322 -112920122 + AluJo SINE Alu 2 135 -177 180 0 0 0 chr9 29351322 29351342 -112920102 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1501 171 29 44 chr9 29351342 29351524 -112919920 + AluJo SINE Alu 135 311 -1 31 0 0 0 chr9 29351661 29351692 -112919752 + AT_rich Low_complexity Low_complexity 1 31 0 532 294 38 55 chr9 29352855 29353093 -112918351 + MIR SINE MIR 4 237 -25 243 0 0 0 chr9 29354064 29354091 -112917353 + (A)n Simple_repeat Simple_repeat 1 27 0 720 165 41 17 chr9 29355233 29355509 -112915935 + MLT1A1 LTR MaLR 36 365 0 326 310 122 13 chr9 29356161 29356270 -112915174 + L1ME4a LINE L1 5563 5659 -462 1891 220 97 36 chr9 29356270 29356828 -112914616 + MLT1E LTR MaLR 2 593 0 326 310 122 13 chr9 29356828 29357021 -112914423 + L1ME4a LINE L1 5659 5898 -223 1179 277 32 19 chr9 29357187 29357566 -112913878 + L2 LINE L2 2552 2935 -379 2482 181 11 19 chr9 29357566 29358031 -112913413 - MLT1C LTR MaLR 0 467 7 236 196 0 0 chr9 29358041 29358087 -112913357 + L2 LINE L2 2933 2978 -335 981 320 24 11 chr9 29358087 29358459 -112912985 + LTR16B LTR ERVL 1 377 -87 562 229 41 8 chr9 29358466 29358588 -112912856 + MER45A DNA AcHobo 33 158 -20 367 218 0 35 chr9 29358588 29358675 -112912769 + LTR16B LTR ERVL 380 463 -1 881 260 88 22 chr9 29358675 29358994 -112912450 + L2 LINE L2 2974 3313 0 562 285 65 39 chr9 29359118 29360188 -112911256 + L1MEd LINE L1 232 1342 -4863 387 0 0 0 chr9 29360195 29360238 -112911206 + (CA)n Simple_repeat Simple_repeat 2 44 0 380 335 28 14 chr9 29360243 29360458 -112910986 + HAL1 LINE L1 1406 1623 -884 1825 165 73 52 chr9 29360458 29360839 -112910605 - MSTD LTR MaLR 0 396 8 1639 169 0 15 chr9 29361194 29361460 -112909984 + AluJo SINE Alu 37 298 -14 1761 95 88 33 chr9 29361541 29361687 -112909757 - AluSc SINE Alu -16 293 156 2469 67 0 3 chr9 29361687 29361984 -112909460 - AluY SINE Alu -15 296 1 1761 95 88 33 chr9 29361984 29362110 -112909334 - AluSc SINE Alu -153 156 6 232 352 38 23 chr9 29362438 29362702 -112908742 + L1MEd LINE L1 2023 2290 -4106 282 243 29 0 chr9 29362703 29362773 -112908671 - Charlie8 DNA MER1_type -4 2413 2342 * 383 303 68 68 chr9 29362767 29362890 -112908554 - Charlie8 DNA MER1_type -2093 324 202 2571 56 0 25 chr9 29362890 29363209 -112908235 - AluY SINE Alu 0 311 1 383 303 68 68 chr9 29363209 29363349 -112908095 - Charlie8 DNA MER1_type -2214 203 61 2646 52 0 0 chr9 29364510 29364816 -112906628 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 29364873 29364894 -112906550 + AT_rich Low_complexity Low_complexity 1 21 0 606 158 135 8 chr9 29366551 29366684 -112904760 - MIR SINE MIR -56 206 57 235 279 189 49 chr9 29366690 29366812 -112904632 - MIR3 SINE MIR -63 145 7 546 271 131 54 chr9 29367325 29367676 -112903768 - L2 LINE L2 -4 3309 2932 2037 144 0 0 chr9 29368233 29368552 -112902892 + AluSx SINE Alu 1 319 0 432 248 8 32 chr9 29368602 29368727 -112902717 + LTR40a LTR ERVL 79 200 -319 767 236 44 35 chr9 29368782 29368985 -112902459 + LTR40a LTR ERVL 197 401 -118 2213 124 0 0 chr9 29369785 29370092 -112901352 - AluSx SINE Alu -5 307 1 222 275 100 0 chr9 29371509 29371589 -112899855 - MIR3 SINE MIR -6 202 115 668 309 50 89 chr9 29371593 29372053 -112899391 - L2 LINE L2 -5 3267 2826 251 310 40 20 chr9 29372038 29372138 -112899306 - MIR SINE MIR -86 122 21 * 2417 77 3 0 chr9 29372976 29373276 -112898168 + AluY SINE Alu 1 301 -10 487 280 68 38 chr9 29374205 29374441 -112897003 + MIR SINE MIR 20 262 0 330 107 0 36 chr9 29374517 29374573 -112896871 - AluSg SINE Alu 0 301 248 9253 57 2 8 chr9 29374573 29374742 -112896702 + MER11C LTR ERVK 1 170 -901 2354 82 0 3 chr9 29374742 29375036 -112896408 + AluY SINE Alu 1 293 -18 9253 57 2 8 chr9 29375036 29375944 -112895500 + MER11C LTR ERVK 170 1071 0 1948 107 0 0 chr9 29375944 29376196 -112895248 - AluSg SINE Alu -58 252 1 294 263 281 0 chr9 29376273 29376387 -112895057 - MER5A DNA MER1_type -35 154 9 1732 170 7 7 chr9 29376431 29376768 -112894676 + AluJb SINE Alu 1 337 0 192 266 172 0 chr9 29376859 29376923 -112894521 + L2 LINE L2 3104 3178 -94 286 273 125 39 chr9 29378595 29378906 -112892538 + L1ME4a LINE L1 5612 5949 -172 301 245 91 42 chr9 29378908 29379051 -112892393 + L1ME4a LINE L1 5972 6121 0 587 311 54 5 chr9 29380100 29380322 -112891122 - Charlie8 DNA MER1_type -2166 251 19 6390 59 1 3 chr9 29381737 29383047 -112888397 + L1PA6 LINE L1 4747 6055 -99 836 126 0 0 chr9 29383047 29383166 -112888278 + AluSg/x SINE Alu 180 298 -14 367 230 0 11 chr9 29384038 29384125 -112887319 - MER117 DNA MER1_type -106 91 6 804 293 99 28 chr9 29385071 29385463 -112885981 + LTR16A LTR ERVL 23 442 -8 1084 188 104 21 chr9 29385674 29385914 -112885530 + Tigger6 DNA MER2_type 4 263 -820 2316 185 135 0 chr9 29386121 29386564 -112884880 - MLT1D LTR MaLR -2 503 1 613 234 15 0 chr9 29386799 29386936 -112884508 - MER103 DNA DNA -15 151 13 221 316 41 31 chr9 29387563 29387661 -112883783 - L3 LINE CR1 -4 1573 1475 254 256 0 70 chr9 29387835 29387921 -112883523 - MIR SINE MIR -1 261 182 2402 64 3 3 chr9 29387921 29388216 -112883228 - AluY SINE Alu -16 295 1 1052 92 0 0 chr9 29388234 29388365 -112883079 - AluSg1 SINE Alu -178 131 1 373 273 117 42 chr9 29388462 29388646 -112882798 - MIR SINE MIR -26 236 42 267 271 29 0 chr9 29389108 29389178 -112882266 + L2 LINE L2 3240 3311 -2 21 57 0 0 chr9 29389960 29389995 -112881449 + AT_rich Low_complexity Low_complexity 1 35 0 189 243 257 0 chr9 29390197 29390271 -112881173 - MIR SINE MIR -76 132 40 253 169 15 15 chr9 29390652 29390717 -112880727 + GA-rich Low_complexity Low_complexity 4 68 0 2156 129 0 0 chr9 29390795 29391098 -112880346 - AluSx SINE Alu -9 303 1 2239 101 3 16 chr9 29391100 29391406 -112880038 - AluSx SINE Alu -10 302 1 250 317 30 0 chr9 29391890 29391991 -112879453 + MER103 DNA DNA 8 111 -55 254 289 61 18 chr9 29392696 29392810 -112878634 + MIR SINE MIR 83 201 -61 1090 252 65 41 chr9 29393250 29393666 -112877778 + MLT1J2 LTR MaLR 6 431 -19 22 0 0 0 chr9 29393713 29393735 -112877709 + AT_rich Low_complexity Low_complexity 1 22 0 794 321 69 13 chr9 29394639 29395121 -112876323 + L2 LINE L2 2554 3066 -247 545 94 12 0 chr9 29395244 29395329 -112876115 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 207 0 0 0 chr9 29395726 29395749 -112875695 + (A)n Simple_repeat Simple_repeat 1 23 0 456 284 96 24 chr9 29396758 29396966 -112874478 + MIR SINE MIR 40 262 0 1711 228 43 39 chr9 29397198 29397663 -112873781 + MLT1C LTR MaLR 1 467 0 495 339 74 41 chr9 29398047 29398560 -112872884 + L2 LINE L2 2079 2608 -706 229 333 0 0 chr9 29398604 29398664 -112872780 + L2 LINE L2 3174 3233 -39 2466 79 13 0 chr9 29398752 29399055 -112872389 + AluSx SINE Alu 1 307 -5 270 291 152 0 chr9 29399131 29399210 -112872234 - L2 LINE L2 0 3272 3182 344 172 0 0 chr9 29400599 29400657 -112870787 - L2 LINE L2 0 3313 3256 197 346 72 33 chr9 29400925 29401078 -112870366 - L2 LINE L2 -75 3197 3039 524 126 137 0 chr9 29402218 29402313 -112869131 + MER53 DNA DNA 1 108 -81 189 0 0 0 chr9 29403071 29403092 -112868352 + (TG)n Simple_repeat Simple_repeat 2 22 0 2360 90 0 3 chr9 29403343 29403653 -112867791 + AluSc SINE Alu 1 309 0 24 0 0 0 chr9 29403711 29403735 -112867709 + AT_rich Low_complexity Low_complexity 1 24 0 264 100 0 0 chr9 29403803 29403843 -112867601 + (TA)n Simple_repeat Simple_repeat 2 41 0 706 302 126 6 chr9 29403844 29404217 -112867227 - L1ME4a LINE L1 -193 5928 5511 26 0 0 0 chr9 29404291 29404317 -112867127 + AT_rich Low_complexity Low_complexity 1 26 0 246 62 0 0 chr9 29404847 29404879 -112866565 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 213 39 0 0 chr9 29405331 29405357 -112866087 + (TGAG)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr9 29405533 29405554 -112865890 + (A)n Simple_repeat Simple_repeat 1 21 0 301 239 0 15 chr9 29406944 29407011 -112864433 + L3 LINE CR1 1510 1575 -2 319 296 100 29 chr9 29408103 29408414 -112863030 + L1ME4a LINE L1 5329 5661 -460 291 243 64 81 chr9 29411534 29411733 -112859711 + MIR SINE MIR 12 212 -50 381 242 158 8 chr9 29412296 29412416 -112859028 + MIR SINE MIR 105 242 -20 208 138 0 35 chr9 29413348 29413406 -112858038 + (TA)n Simple_repeat Simple_repeat 1 56 0 610 110 55 0 chr9 29413892 29413983 -112857461 + FRAM SINE Alu 69 164 -12 279 268 24 0 chr9 29415117 29415199 -112856245 + CT-rich Low_complexity Low_complexity 4 87 0 306 148 0 0 chr9 29415985 29416039 -112855405 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 334 206 0 103 chr9 29416444 29416551 -112854893 + MLT1H LTR MaLR 454 549 0 232 159 0 23 chr9 29416574 29416618 -112854826 + MIR SINE MIR 212 254 -8 292 234 102 91 chr9 29416648 29416922 -112854522 + L1ME4a LINE L1 5744 6020 -101 506 246 47 23 chr9 29417696 29417867 -112853577 + MLT1K LTR MaLR 397 571 -17 21 0 0 0 chr9 29418041 29418062 -112853382 + AT_rich Low_complexity Low_complexity 1 21 0 474 293 23 8 chr9 29418187 29418320 -112853124 - MIR SINE MIR -6 256 122 390 241 85 47 chr9 29418697 29418909 -112852535 + LTR16C LTR ERVL 266 485 -6 36 40 0 0 chr9 29419110 29419160 -112852284 + AT_rich Low_complexity Low_complexity 1 50 0 694 231 63 80 chr9 29419427 29419458 -112851986 - MLT1I LTR MaLR -18 391 361 2102 189 110 23 chr9 29419458 29419929 -112851515 + MLT2B2 LTR ERVL 1 512 -3 694 231 63 80 chr9 29419929 29420196 -112851248 - MLT1I LTR MaLR -48 361 98 392 231 224 8 chr9 29420287 29420421 -112851023 + MIR SINE MIR 91 253 -9 217 385 42 30 chr9 29420431 29420597 -112850847 - L3b LINE CR1 -311 1272 1105 520 264 90 14 chr9 29422115 29422259 -112849185 - L2 LINE L2 0 3272 3118 277 195 230 11 chr9 29422333 29422420 -112849024 - L2 LINE L2 -8 3305 3200 345 325 109 39 chr9 29422444 29422726 -112848718 - L2 LINE L2 -216 3056 2732 2430 68 0 0 chr9 29422726 29423018 -112848426 - AluY SINE Alu -19 292 1 345 325 109 39 chr9 29423018 29423218 -112848226 - L2 LINE L2 -540 2732 2547 909 274 9 14 chr9 29423490 29423713 -112847731 - MIR SINE MIR -8 254 33 22 0 0 0 chr9 29424489 29424511 -112846933 + AT_rich Low_complexity Low_complexity 1 22 0 405 294 119 0 chr9 29424518 29424644 -112846800 - L2 LINE L2 -3 3269 3129 246 319 109 14 chr9 29424723 29424861 -112846583 - L2 LINE L2 -523 2791 2641 2364 214 35 24 chr9 29424989 29425308 -112846136 - L1MEc LINE L1 -3286 2929 2615 2245 60 53 3 chr9 29425308 29425592 -112845852 + AluY SINE Alu 1 298 -13 2364 214 35 24 chr9 29425592 29425951 -112845493 - L1MEc LINE L1 -3600 2615 2243 1608 132 42 100 chr9 29425956 29426366 -112845078 - L1MA8 LINE L1 -3 6288 5903 233 167 0 0 chr9 29426365 29426413 -112845031 - L1MEc LINE L1 -4094 2302 2255 * 465 187 98 0 chr9 29426403 29426815 -112844629 + L1MEc LINE L1 1833 2318 -4078 259 228 281 24 chr9 29426815 29426982 -112844462 - MIR SINE MIR -13 249 40 507 244 96 0 chr9 29427099 29427234 -112844210 + MIR SINE MIR 43 190 -72 35 83 0 0 chr9 29427637 29427721 -112843723 + AT_rich Low_complexity Low_complexity 1 84 0 23 0 0 0 chr9 29428365 29428388 -112843056 + AT_rich Low_complexity Low_complexity 1 23 0 231 36 0 0 chr9 29429819 29429847 -112841597 + (A)n Simple_repeat Simple_repeat 1 28 0 2266 100 3 0 chr9 29430231 29430522 -112840922 - AluSc SINE Alu -15 294 3 31 26 0 0 chr9 29431371 29431409 -112840035 + AT_rich Low_complexity Low_complexity 1 38 0 340 233 27 33 chr9 29431506 29431656 -112839788 + (TA)n Simple_repeat Simple_repeat 1 149 0 207 229 0 0 chr9 29432710 29432745 -112838699 + L2 LINE L2 3211 3245 -27 4172 181 48 24 chr9 29433205 29433734 -112837710 - L1P LINE L1 -1638 4508 3945 1845 162 0 26 chr9 29433734 29434036 -112837408 - AluJb SINE Alu -18 294 1 4172 181 48 24 chr9 29434036 29434441 -112837003 - L1P LINE L1 -2201 3945 3551 5156 110 81 1 chr9 29434441 29436030 -112835414 + L1PA15 LINE L1 4483 6162 -3 24 32 0 0 chr9 29436068 29436099 -112835345 + AT_rich Low_complexity Low_complexity 1 31 0 186 194 28 0 chr9 29436895 29436931 -112834513 - L2 LINE L2 -16 3256 3220 1623 181 10 17 chr9 29436939 29437238 -112834206 - AluJo SINE Alu -10 302 6 22 0 0 0 chr9 29437426 29437448 -112833996 + AT_rich Low_complexity Low_complexity 1 22 0 333 303 92 9 chr9 29437603 29437712 -112833732 + L2 LINE L2 3151 3268 -4 435 317 104 5 chr9 29438255 29438649 -112832795 + L1ME4a LINE L1 5616 6048 -73 21 0 0 0 chr9 29439186 29439207 -112832237 + AT_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr9 29439409 29439471 -112831973 + AT_rich Low_complexity Low_complexity 1 62 0 396 174 188 49 chr9 29440161 29440305 -112831139 + MER103 DNA DNA 3 166 0 297 289 0 0 chr9 29441930 29442006 -112829438 - MIR SINE MIR -46 162 86 244 275 43 0 chr9 29442244 29442313 -112829131 + MIR SINE MIR 188 259 -3 847 234 106 18 chr9 29442353 29442579 -112828865 - MIR SINE MIR -15 247 2 23 54 0 0 chr9 29443672 29443709 -112827735 + AT_rich Low_complexity Low_complexity 1 37 0 1681 128 8 0 chr9 29444040 29444283 -112827161 - AluSq SINE Alu 0 313 69 207 0 0 0 chr9 29445536 29445559 -112825885 + (A)n Simple_repeat Simple_repeat 1 23 0 227 307 79 40 chr9 29447565 29447666 -112823778 - MIR3 SINE MIR -19 189 85 195 128 51 26 chr9 29448691 29448730 -112822714 + L2 LINE L2 3227 3266 -6 1732 176 79 29 chr9 29448983 29449426 -112822018 + MLT1C LTR MaLR 3 467 0 189 0 0 0 chr9 29449466 29449487 -112821957 + (A)n Simple_repeat Simple_repeat 1 21 0 5188 129 85 18 chr9 29449949 29451050 -112820394 + Tigger3b DNA MER2_type 1 1198 -33 2024 101 7 23 chr9 29451963 29452297 -112819147 + AluSx SINE Alu 1 312 0 1764 167 14 0 chr9 29452842 29453123 -112818321 - AluJo SINE Alu -17 295 11 234 0 0 0 chr9 29454590 29454616 -112816828 + (CCG)n Simple_repeat Simple_repeat 1 26 0 326 197 15 53 chr9 29454796 29454928 -112816516 + C-rich Low_complexity Low_complexity 3 129 0 190 244 0 0 chr9 29455442 29455487 -112815957 + L2 LINE L2 3264 3308 -5 2193 177 42 11 chr9 29456054 29456501 -112814943 + MER65C LTR ERV1 1 461 0 458 236 109 6 chr9 29456551 29456716 -112814728 + L1MA9 LINE L1 5917 6098 -214 2068 149 83 5 chr9 29456716 29457113 -112814331 - MSTA LTR MaLR 0 428 1 4740 186 35 12 chr9 29457119 29457934 -112813510 - MSTA-int LTR MaLR -6 1645 803 3696 185 37 4 chr9 29457934 29458643 -112812801 - MER50 LTR ERV1 -2 732 1 4740 186 35 12 chr9 29458643 29458799 -112812645 - MSTA-int LTR MaLR -848 803 652 5054 25 3 0 chr9 29458801 29459455 -112811989 + L1PA3 LINE L1 5519 6174 0 3499 164 31 0 chr9 29459465 29460099 -112811345 - MSTA-int LTR MaLR -997 654 1 2527 118 51 17 chr9 29460099 29460513 -112810931 - MSTA LTR MaLR 0 428 1 734 189 55 0 chr9 29460514 29460678 -112810766 + L1MA9 LINE L1 6103 6275 -37 323 244 25 109 chr9 29460689 29460808 -112810636 - MIR SINE MIR -72 190 82 604 281 67 14 chr9 29461712 29461922 -112809522 + MIR SINE MIR 2 222 -40 2215 102 37 0 chr9 29462286 29462580 -112808864 - AluSp SINE Alu -6 307 3 1990 136 30 13 chr9 29462865 29463167 -112808277 + AluSx SINE Alu 1 307 -5 304 311 84 21 chr9 29464115 29464423 -112807021 + L2 LINE L2 2709 3068 -204 595 280 165 9 chr9 29464570 29464788 -112806656 + MIR SINE MIR 11 262 0 181 195 24 0 chr9 29464790 29464831 -112806613 + L2 LINE L2 3272 3313 0 315 309 41 0 chr9 29464833 29464930 -112806514 - MIR SINE MIR -55 153 53 282 333 39 31 chr9 29464985 29465114 -112806330 + L2 LINE L2 3127 3256 -16 22 56 0 0 chr9 29466196 29466232 -112805212 + AT_rich Low_complexity Low_complexity 1 36 0 1972 141 7 20 chr9 29466713 29467010 -112804434 - AluSx SINE Alu -12 300 8 2168 177 2 8 chr9 29468025 29468421 -112803023 + MER57A LTR ERV1 1 394 -9 1762 126 21 37 chr9 29468427 29468752 -112802692 - L1MA3 LINE L1 -8 6297 5978 1467 125 12 0 chr9 29468752 29469050 -112802394 + L1M1 LINE L1 5211 5511 -743 180 260 80 0 chr9 29469292 29469342 -112802102 + L2 LINE L2 3208 3261 -11 35 88 0 0 chr9 29469433 29469524 -112801920 + AT_rich Low_complexity Low_complexity 1 91 0 969 258 75 73 chr9 29469576 29469778 -112801666 - L1MC4a LINE L1 -1773 6035 5835 2233 44 34 27 chr9 29469778 29470072 -112801372 - AluY SINE Alu -15 296 1 969 258 75 73 chr9 29470072 29470527 -112800917 - L1MC4a LINE L1 -1973 5835 5377 726 310 20 27 chr9 29470536 29470943 -112800501 + L1PA16 LINE L1 10 413 -7168 13038 224 39 10 chr9 29471493 29476716 -112794728 + L1PA16 LINE L1 2224 7588 -16 200 216 69 147 chr9 29476850 29476952 -112794492 + L2 LINE L2 3165 3258 -55 * 222 313 47 31 chr9 29476951 29477079 -112794365 - L2 LINE L2 -820 2494 2365 1938 168 93 20 chr9 29477092 29477544 -112793900 + MER52A LTR ERV1 1271 1755 0 1292 195 200 26 chr9 29477619 29478049 -112793395 - MLT1D LTR MaLR 0 505 1 649 227 38 76 chr9 29478879 29479117 -112792327 - L1ME3A LINE L1 -18 6152 5924 452 224 0 22 chr9 29480113 29480247 -112791197 + L1MA9 LINE L1 6157 6287 -25 768 87 9 9 chr9 29480261 29480376 -112791068 - AluSg/x SINE Alu -2 308 194 340 184 37 18 chr9 29480877 29480986 -112790458 + MER113 DNA MER1_type? 90 200 -321 413 339 0 8 chr9 29481006 29481133 -112790311 + MIR3 SINE MIR 8 133 -75 216 0 0 0 chr9 29481133 29481157 -112790287 + (A)n Simple_repeat Simple_repeat 1 24 0 248 268 12 0 chr9 29481267 29481349 -112790095 + MER117 DNA MER1_type 6 88 -109 599 186 215 0 chr9 29483355 29483612 -112787832 - MER33 DNA MER1_type -4 359 6 1409 234 45 28 chr9 29484462 29484924 -112786520 + LTR38 LTR ERV1 87 556 0 28 29 0 0 chr9 29485180 29485215 -112786229 + AT_rich Low_complexity Low_complexity 1 35 0 447 231 60 0 chr9 29485863 29485997 -112785447 + MER5C DNA MER1_type 128 269 -55 358 331 49 22 chr9 29486302 29486486 -112784958 + MER5A DNA MER1_type 1 189 0 449 291 120 20 chr9 29486760 29487059 -112784385 - MLT1J2 LTR MaLR -121 329 1 2468 57 3 0 chr9 29488456 29488755 -112782689 - AluY SINE Alu -11 300 1 241 270 54 34 chr9 29489196 29489344 -112782100 + L1ME LINE L1 5648 5798 -323 25 51 0 0 chr9 29489356 29489395 -112782049 + AT_rich Low_complexity Low_complexity 1 39 0 2057 104 0 0 chr9 29492348 29492636 -112778808 - L1PA7 LINE L1 -6 6148 5861 19105 120 20 87 chr9 29492636 29496749 -112774695 - L1P LINE L1 -2298 3848 12 1605 142 22 18 chr9 29496763 29497037 -112774407 - AluJb SINE Alu -13 299 25 21 36 0 0 chr9 29497059 29497087 -112774357 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 29497509 29497530 -112773914 + AT_rich Low_complexity Low_complexity 1 21 0 207 319 80 51 chr9 29498332 29498470 -112772974 - L2 LINE L2 0 3313 3172 468 285 69 0 chr9 29498586 29498730 -112772714 - L2 LINE L2 0 3272 3119 1238 199 17 14 chr9 29498772 29499063 -112772381 - MLT1C LTR MaLR 0 467 176 21 36 0 0 chr9 29500807 29500835 -112770609 + AT_rich Low_complexity Low_complexity 1 28 0 574 261 153 0 chr9 29501493 29501650 -112769794 + MER5A DNA MER1_type 9 189 0 21 0 0 0 chr9 29502268 29502289 -112769155 + AT_rich Low_complexity Low_complexity 1 21 0 2323 53 0 0 chr9 29502337 29502645 -112768799 + AluY SINE Alu 1 308 0 853 277 53 44 chr9 29502645 29503250 -112768194 + L1ME LINE L1 5200 5808 -313 2355 74 0 19 chr9 29503259 29503570 -112767874 + AluY SINE Alu 1 305 -6 214 182 65 13 chr9 29503645 29503722 -112767722 + (TA)n Simple_repeat Simple_repeat 2 82 0 269 185 15 0 chr9 29503806 29503871 -112767573 + (TA)n Simple_repeat Simple_repeat 1 66 0 180 198 86 190 chr9 29504238 29504354 -112767090 + MIR3 SINE MIR 93 196 -12 551 191 229 16 chr9 29504366 29504549 -112766895 - L1ME LINE L1 -583 5583 5362 884 209 57 29 chr9 29504567 29504882 -112766562 + L1ME LINE L1 5026 5349 -797 4703 212 31 45 chr9 29505806 29506188 -112765256 - Zaphod DNA AcHobo -2680 1351 965 1409 186 119 67 chr9 29506188 29506666 -112764778 + MLT1D LTR MaLR 1 503 -2 4703 212 31 45 chr9 29506666 29507653 -112763791 - Zaphod DNA AcHobo -3066 965 1 23 0 0 0 chr9 29508972 29508995 -112762449 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr9 29509021 29509043 -112762401 + (A)n Simple_repeat Simple_repeat 1 22 0 211 350 12 12 chr9 29509391 29509471 -112761973 - MER5A DNA MER1_type -64 125 46 * 376 291 10 10 chr9 29509401 29509504 -112761940 + MER5B DNA MER1_type 75 177 -1 1067 181 37 19 chr9 29509518 29509733 -112761711 + MER20 DNA MER1_type 1 219 0 310 188 16 0 chr9 29509760 29509824 -112761620 + L1MA3 LINE L1 5893 5957 -348 1672 99 39 14 chr9 29509925 29510208 -112761236 + L1MA3 LINE L1 6016 6305 0 617 191 15 103 chr9 29511067 29511271 -112760173 + MER53 DNA DNA 4 189 0 1054 249 207 26 chr9 29512220 29513000 -112758444 - L2 LINE L2 -28 3285 2376 859 252 87 29 chr9 29513076 29513319 -112758125 - L1MC4 LINE L1 -143 7899 7633 2132 96 23 13 chr9 29513319 29513620 -112757824 - AluSx SINE Alu -7 305 2 859 252 87 29 chr9 29513620 29513686 -112757758 - L1MC4 LINE L1 -409 7633 7572 1672 233 58 35 chr9 29513690 29513739 -112757705 - MLT1E LTR MaLR -4 589 543 333 47 0 0 chr9 29513739 29513782 -112757662 + (CA)n Simple_repeat Simple_repeat 2 44 0 1672 233 58 35 chr9 29513782 29514212 -112757232 - MLT1E LTR MaLR -50 543 99 991 229 80 5 chr9 29514347 29515191 -112756253 - L1MC4 LINE L1 -502 7540 6479 787 202 26 47 chr9 29516452 29516645 -112754799 + MER5A DNA MER1_type 1 189 0 2435 78 0 0 chr9 29517007 29517315 -112754129 - AluY SINE Alu -3 308 1 2362 113 80 28 chr9 29517385 29517808 -112753636 + MER65A LTR ERV1 1 445 0 3255 90 0 26 chr9 29518492 29518948 -112752496 + MLT2A1 LTR ERVL 1 444 0 42477 70 8 1 chr9 29518948 29524563 -112746881 + HERVL-A1 LTR ERVL 1 5654 0 3023 62 5 2 chr9 29524565 29524965 -112746479 + MLT2A1 LTR ERVL 3 403 -41 354 318 18 0 chr9 29524983 29525153 -112746291 + (TA)n Simple_repeat Simple_repeat 2 174 0 354 62 0 0 chr9 29525223 29525271 -112746173 + MLT2A1 LTR ERVL 406 453 0 22260 148 9 24 chr9 29526249 29529259 -112742185 + L1P3 LINE L1 3 2967 -3494 2074 97 4 0 chr9 29529259 29529528 -112741916 - AluY SINE Alu -41 270 1 22260 148 9 24 chr9 29529528 29531830 -112739614 + L1P3 LINE L1 2967 5301 -1160 6361 89 1 2 chr9 29531834 29533087 -112738357 + L1PA8A LINE L1 4878 6131 0 795 172 0 8 chr9 29533773 29533907 -112737537 + FLAM_C SINE Alu 1 133 0 7254 128 24 17 chr9 29533939 29535162 -112736282 + Tigger3b DNA MER2_type 1 1231 0 21 57 0 0 chr9 29535250 29535285 -112736159 + AT_rich Low_complexity Low_complexity 1 35 0 1913 229 28 20 chr9 29535371 29535907 -112735537 - L1ME1 LINE L1 -9 6157 5618 4042 120 46 88 chr9 29536097 29536916 -112734528 + LTR1 LTR ERV1 1 785 0 2305 65 17 3 chr9 29537383 29537677 -112733767 + AluY SINE Alu 1 298 -13 2257 84 3 0 chr9 29539885 29540192 -112731252 - AluSp SINE Alu 0 308 1 718 319 70 17 chr9 29540770 29541254 -112730190 + L2 LINE L2 2554 3066 -247 384 103 0 0 chr9 29541377 29541435 -112730009 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 464 117 13 0 chr9 29541535 29541612 -112729832 + MER51C LTR ERV1 561 638 -2 438 307 87 15 chr9 29541757 29541943 -112729501 - MIR SINE MIR -64 198 1 189 0 0 0 chr9 29542030 29542051 -112729393 + (A)n Simple_repeat Simple_repeat 1 21 0 204 317 12 12 chr9 29542611 29542693 -112728751 + GA-rich Low_complexity Low_complexity 2 83 0 185 284 157 10 chr9 29543779 29543881 -112727563 - MIR SINE MIR -75 133 17 2093 150 0 0 chr9 29544096 29544402 -112727042 + AluSx SINE Alu 1 306 -6 524 301 54 16 chr9 29544696 29544882 -112726562 + MIR SINE MIR 51 243 -19 185 128 0 26 chr9 29545994 29546033 -112725411 + (CATG)n Simple_repeat Simple_repeat 3 40 0 192 286 52 13 chr9 29546440 29546517 -112724927 - MIR SINE MIR -6 256 177 526 185 84 8 chr9 29546902 29547021 -112724423 - FLAM_C SINE Alu -15 128 1 661 227 83 61 chr9 29547106 29547384 -112724060 - MARNA DNA Mariner -160 426 143 10486 154 53 52 chr9 29547829 29550244 -112721200 + Tigger1 DNA MER2_type 1 2418 0 616 235 11 21 chr9 29550458 29550645 -112720799 + L1MC4a LINE L1 6348 6532 -1276 231 280 0 0 chr9 29550645 29550695 -112720749 + L1MC3 LINE L1 6678 6727 -1058 * 1586 205 42 13 chr9 29550688 29551073 -112720371 + L1MD3 LINE L1 6787 7182 -813 2049 186 49 72 chr9 29551127 29551736 -112719708 - LTR9 LTR ERV1 0 612 18 349 267 113 104 chr9 29552087 29552567 -112718877 - L2 LINE L2 -6 3307 2824 1719 123 0 16 chr9 29552770 29553013 -112718431 + AluSc SINE Alu 70 308 -1 1744 166 0 33 chr9 29553125 29553426 -112718018 + AluJo SINE Alu 1 291 -21 212 357 124 25 chr9 29553572 29554056 -112717388 - L2 LINE L2 -338 2976 2445 445 275 23 30 chr9 29555014 29555145 -112716299 - MIR SINE MIR -102 160 31 24 53 0 0 chr9 29555749 29555787 -112715657 + AT_rich Low_complexity Low_complexity 1 38 0 1914 185 50 82 chr9 29556100 29556177 -112715267 - MLT1E2 LTR MaLR -1 625 547 1132 126 111 0 chr9 29556177 29556384 -112715060 + MER30 DNA MER1_type 1 230 0 1914 185 50 82 chr9 29556384 29556638 -112714806 - MLT1E2 LTR MaLR -79 547 313 391 181 12 24 chr9 29556638 29556721 -112714723 - L1PB4 LINE L1 -2 6154 6073 1914 185 50 82 chr9 29556721 29556966 -112714478 - MLT1E2 LTR MaLR -313 313 62 216 342 13 13 chr9 29558881 29558960 -112712484 + L2 LINE L2 3187 3265 -7 232 259 0 19 chr9 29559703 29559757 -112711687 - L1M2 LINE L1 -6397 452 400 418 239 83 0 chr9 29560217 29560326 -112711118 - MIR SINE MIR -73 189 72 333 263 21 0 chr9 29560361 29560456 -112710988 - MLT2E LTR ERVL 0 628 532 27 29 0 0 chr9 29560476 29560510 -112710934 + AT_rich Low_complexity Low_complexity 1 34 0 198 103 0 0 chr9 29560746 29560775 -112710669 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 29561344 29561368 -112710076 + AT_rich Low_complexity Low_complexity 1 24 0 188 326 32 11 chr9 29562691 29562786 -112708658 + MIR SINE MIR 117 213 -49 777 292 42 4 chr9 29564529 29564769 -112706675 + MIR SINE MIR 13 261 -1 2372 57 3 3 chr9 29564875 29565173 -112706271 - AluY SINE Alu -13 298 1 314 320 29 0 chr9 29565298 29565401 -112706043 + MIR SINE MIR 46 151 -111 242 250 0 0 chr9 29565658 29565710 -112705734 + MER72 LTR ERV1 410 461 -261 434 195 45 78 chr9 29565786 29565945 -112705499 + LTR45B LTR ERV1 314 503 -22 10502 194 43 12 chr9 29565945 29567825 -112703619 - L1M1 LINE L1 -671 5634 3656 2888 19 0 0 chr9 29567825 29568141 -112703303 - AluYb8 SINE Alu -2 316 1 10502 194 43 12 chr9 29568141 29568655 -112702789 - L1M1 LINE L1 -2649 3656 3159 394 267 78 37 chr9 29572549 29572740 -112698704 - MIR SINE MIR -44 218 20 470 322 191 23 chr9 29572833 29573320 -112698124 + L3 LINE CR1 999 1567 -10 636 246 0 0 chr9 29576630 29576744 -112694700 - MER81 DNA DNA 0 114 1 1973 98 20 7 chr9 29577024 29577381 -112694063 - MER51C LTR ERV1 -361 279 1 241 331 27 47 chr9 29577475 29577585 -112693859 - MIR SINE MIR -24 238 130 5574 68 134 4 chr9 29577585 29578315 -112693129 + LTR12 LTR ERV1 1 825 -1 241 331 27 47 chr9 29578315 29578352 -112693092 - MIR SINE MIR -132 130 94 444 315 81 55 chr9 29578799 29579037 -112692407 - MIR SINE MIR -20 242 6 511 291 90 33 chr9 29579599 29579843 -112691601 - MIR SINE MIR -4 258 1 258 278 157 0 chr9 29579988 29580096 -112691348 - MIR SINE MIR -87 175 51 240 330 93 0 chr9 29580391 29580488 -112690956 + MIR3 SINE MIR 94 199 -9 224 274 0 0 chr9 29580845 29580896 -112690548 + L2 LINE L2 2703 2753 -561 234 0 0 0 chr9 29580934 29580960 -112690484 + (T)n Simple_repeat Simple_repeat 1 26 0 578 209 0 16 chr9 29581088 29581217 -112690227 + L1PA7 LINE L1 4397 4523 -1623 2654 68 21 6 chr9 29581218 29581554 -112689890 + L1PA7 LINE L1 5810 6150 -4 7279 64 10 2 chr9 29581562 29583206 -112688238 + L1PA7 LINE L1 4507 6154 0 472 335 18 0 chr9 29583223 29583387 -112688057 + MER63A DNA MER1_type 43 209 -1 2355 109 77 6 chr9 29583400 29583740 -112687704 - THE1B LTR MaLR 0 364 1 738 107 83 0 chr9 29583975 29584096 -112687348 - L1MA9 LINE L1 0 6312 6182 290 200 13 80 chr9 29584924 29584999 -112686445 - MER5A DNA MER1_type -111 78 9 5242 160 35 12 chr9 29585002 29585904 -112685540 - MER49 LTR ERV1 0 923 1 882 240 0 6 chr9 29586850 29587029 -112684415 - MER5B DNA MER1_type 0 178 1 295 299 120 8 chr9 29587279 29587396 -112684048 + MIR SINE MIR 62 191 -71 280 203 174 0 chr9 29588775 29588844 -112682600 - MLT1I LTR MaLR -12 397 317 428 215 84 9 chr9 29588950 29589057 -112682387 - MLT1I LTR MaLR -254 155 41 343 318 18 35 chr9 29590470 29590640 -112680804 + MIR SINE MIR 46 212 -50 433 235 154 72 chr9 29591001 29591307 -112680137 + MLT1H LTR MaLR 116 446 -103 443 301 38 23 chr9 29592083 29592216 -112679228 + L2 LINE L2 3138 3272 0 411 382 96 14 chr9 29592250 29592603 -112678841 - L3 LINE CR1 -183 1394 1013 235 162 27 27 chr9 29592658 29592732 -112678712 + (TATAA)n Simple_repeat Simple_repeat 3 76 0 312 246 21 92 chr9 29592760 29592902 -112678542 - MIR SINE MIR -66 196 65 389 333 131 22 chr9 29593124 29593391 -112678053 - L3 LINE CR1 -629 948 653 1132 140 0 91 chr9 29593662 29593883 -112677561 - AluJo SINE Alu -16 296 96 1806 166 3 10 chr9 29594070 29594365 -112677079 - AluJb SINE Alu -14 298 6 36181 40 32 2 chr9 29594781 29599212 -112672232 - L1P LINE L1 -1579 4567 2 436 340 25 10 chr9 29599399 29599599 -112671845 - MIR SINE MIR -58 204 2 910 196 22 5 chr9 29599875 29600059 -112671385 - MER53 DNA DNA -2 187 1 1626 195 84 90 chr9 29600232 29600709 -112670735 - MLT1E1 LTR MaLR -180 474 1 227 371 36 0 chr9 29602667 29602807 -112668637 + L2 LINE L2 2168 2312 -1002 22 0 0 0 chr9 29604346 29604368 -112667076 + AT_rich Low_complexity Low_complexity 1 22 0 447 19 0 0 chr9 29604375 29604427 -112667017 + (CA)n Simple_repeat Simple_repeat 2 53 0 388 152 30 0 chr9 29604432 29604498 -112666946 + L1ME4a LINE L1 5979 6046 -75 21 0 0 0 chr9 29604536 29604557 -112666887 + AT_rich Low_complexity Low_complexity 1 21 0 420 200 36 27 chr9 29604710 29604820 -112666624 - L2 LINE L2 -1370 1944 1834 2214 110 0 25 chr9 29605430 29605749 -112665695 + AluSx SINE Alu 1 311 -1 402 263 63 46 chr9 29607317 29607492 -112663952 - MIR SINE MIR -45 217 40 295 245 274 0 chr9 29607588 29607694 -112663750 + MIR SINE MIR 119 253 -9 221 324 209 7 chr9 29608627 29608775 -112662669 - MIR SINE MIR -33 229 52 243 337 0 10 chr9 29608845 29608943 -112662501 + MIR SINE MIR 154 250 -12 26533 130 17 88 chr9 29610547 29616538 -112654906 - L1PA8A LINE L1 -599 5532 1 265 250 0 0 chr9 29616541 29616609 -112654835 + CT-rich Low_complexity Low_complexity 3 70 0 571 354 45 15 chr9 29616668 29617140 -112654304 + ERVL LTR ERVL 1909 2394 -3370 1235 226 24 0 chr9 29617200 29617497 -112653947 + L1MA4 LINE L1 5983 6286 -14 2770 181 16 27 chr9 29617755 29618380 -112653064 - L1MB8 LINE L1 0 6178 5561 2294 133 83 10 chr9 29618806 29619205 -112652239 + MSTA LTR MaLR 1 428 0 6873 200 32 1 chr9 29619205 29620637 -112650807 + MSTA-int LTR MaLR 1 1476 -175 1679 166 36 25 chr9 29621061 29621417 -112650027 + THE1C LTR MaLR 14 373 -2 295 316 61 0 chr9 29621810 29621924 -112649520 + Charlie8 DNA MER1_type 100 220 -2197 740 242 139 28 chr9 29622170 29622559 -112648885 + LTR16A1 LTR ERVL 20 451 -6 274 290 0 56 chr9 29622713 29622820 -112648624 + MER117 DNA MER1_type 1 101 -96 1881 229 64 22 chr9 29622864 29623397 -112648047 - MER74B LTR ERVL -67 555 1 260 340 10 29 chr9 29623500 29623603 -112647841 + L2 LINE L2 2995 3095 -177 373 209 90 81 chr9 29623653 29623864 -112647580 - L1ME1 LINE L1 -6 6160 5948 838 180 25 62 chr9 29623996 29624240 -112647204 - L1ME1 LINE L1 -168 5998 5764 248 274 24 65 chr9 29624274 29624398 -112647046 - MER74A LTR ERVL -56 502 384 351 109 18 0 chr9 29624452 29624507 -112646937 - L1ME LINE L1 -429 5735 5680 628 208 33 29 chr9 29624507 29624857 -112646587 + L1ME LINE L1 5190 5650 -516 2068 150 0 7 chr9 29624988 29625295 -112646149 + AluSx SINE Alu 1 305 -7 640 302 68 38 chr9 29625301 29625669 -112645775 + MER93a LTR ERV1 13 391 -11 13270 195 62 30 chr9 29626280 29628680 -112642764 - L1PA14 LINE L1 -134 7465 5144 252 0 0 0 chr9 29628680 29628708 -112642736 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 13270 195 62 30 chr9 29628708 29629269 -112642175 - L1PA14 LINE L1 -2455 5144 4602 2738 17 0 0 chr9 29629269 29629569 -112641875 - AluYa5 SINE Alu -11 300 1 13270 195 62 30 chr9 29629569 29630921 -112640523 - L1PA14 LINE L1 -2997 4602 3002 10665 137 16 15 chr9 29630925 29633190 -112638254 - L1PA14 LINE L1 -5029 2552 1 751 149 91 0 chr9 29634433 29634587 -112636857 + L1MA7 LINE L1 6089 6256 -35 257 89 22 0 chr9 29634687 29634732 -112636712 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 317 291 86 7 chr9 29634742 29634893 -112636551 + LTR50 LTR ERVL 2 164 -631 210 37 0 0 chr9 29634900 29634927 -112636517 + (CAA)n Simple_repeat Simple_repeat 1 27 0 316 236 68 26 chr9 29635286 29635468 -112635976 + LTR41 LTR ERVL 582 792 -3 418 277 62 23 chr9 29635470 29635600 -112635844 - L2 LINE L2 -12 3301 3167 231 179 0 0 chr9 29636004 29636043 -112635401 - MER5B DNA MER1_type -2 176 138 1407 198 59 53 chr9 29636063 29636421 -112635023 + MLT1A1 LTR MaLR 1 360 -5 562 219 0 0 chr9 29636424 29636529 -112634915 + MER5B DNA MER1_type 74 178 0 220 288 125 0 chr9 29638299 29638379 -112633065 + MIR SINE MIR 16 105 -103 432 346 65 30 chr9 29638399 29638630 -112632814 - L3 LINE CR1 -43 1534 1296 184 291 70 0 chr9 29639054 29639140 -112632304 + L2 LINE L2 3134 3225 -88 772 199 73 37 chr9 29639724 29639915 -112631529 - MER58A DNA MER1_type -26 198 1 645 242 143 0 chr9 29639923 29640084 -112631360 + MER5A DNA MER1_type 1 184 -5 210 298 0 18 chr9 29640933 29640990 -112630454 - L3 LINE CR1 -96 1481 1426 204 261 0 0 chr9 29640999 29641045 -112630399 + L2 LINE L2 3265 3310 -3 591 306 64 9 chr9 29641191 29641410 -112630034 - MIR SINE MIR -27 235 5 230 263 181 15 chr9 29642627 29642760 -112628684 - L2 LINE L2 0 3313 3159 197 211 26 0 chr9 29642988 29643026 -112628418 - L2 LINE L2 -15 3257 3219 451 307 109 33 chr9 29643245 29643548 -112627896 + MLT1I LTR MaLR 50 375 -34 215 380 65 0 chr9 29643707 29643815 -112627629 + L2 LINE L2 3158 3272 0 6604 83 6 2 chr9 29644049 29644416 -112627028 + L1PA10 LINE L1 4759 5123 -1045 2068 121 4 4 chr9 29644416 29644697 -112626747 + AluSp SINE Alu 1 281 -32 267 31 0 0 chr9 29644699 29644731 -112626713 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 6604 83 6 2 chr9 29644731 29645794 -112625650 + L1PA10 LINE L1 5123 6167 -1 182 337 33 43 chr9 29646245 29646337 -112625107 - L2 LINE L2 -2819 495 405 276 278 52 43 chr9 29647467 29647582 -112623862 + L2 LINE L2 3156 3271 -1 277 268 113 10 chr9 29647602 29647699 -112623745 - L2 LINE L2 -13 3259 3153 201 256 0 0 chr9 29648272 29648315 -112623129 + L2 LINE L2 3139 3181 -91 226 200 80 0 chr9 29648617 29648667 -112622777 + MER91C DNA MER1_type 48 101 -39 202 347 67 0 chr9 29648900 29648975 -112622469 + L2 LINE L2 3188 3267 -5 396 256 200 0 chr9 29649151 29649276 -112622168 + MIR SINE MIR 20 169 -93 673 198 136 11 chr9 29649464 29649641 -112621803 - MER3 DNA MER1_type -1 208 10 315 240 202 0 chr9 29650757 29650886 -112620558 - L1ME4a LINE L1 0 6121 5967 253 241 321 0 chr9 29651900 29652012 -112619432 + MIR SINE MIR 59 206 -56 852 225 13 66 chr9 29652294 29652521 -112618923 - MER20 DNA MER1_type -4 215 1 309 278 202 17 chr9 29653249 29653422 -112618022 - MIR SINE MIR -8 254 50 405 280 88 8 chr9 29653772 29653897 -112617547 - L2 LINE L2 -6 3266 3132 560 313 61 19 chr9 29654965 29655275 -112616169 - MLT1I LTR MaLR -60 349 27 581 298 53 6 chr9 29655309 29655480 -112615964 + MIR SINE MIR 78 256 -6 343 314 0 0 chr9 29656956 29657058 -112614386 - MIR SINE MIR -74 188 87 246 189 0 0 chr9 29657077 29657124 -112614320 + MIR SINE MIR 104 151 -57 900 239 39 10 chr9 29657135 29657340 -112614104 - MER20 DNA MER1_type -4 215 5 4826 60 5 2 chr9 29657505 29658120 -112613324 + L1PA8 LINE L1 5542 6158 -14 183 337 24 36 chr9 29658121 29658204 -112613240 + MIR SINE MIR 148 229 -33 262 233 35 23 chr9 29659424 29659510 -112611934 + MER103 DNA DNA 62 148 -18 2157 191 56 34 chr9 29660131 29660687 -112610757 - LTR29 LTR ERV1 -54 568 1 4074 82 11 5 chr9 29660820 29661371 -112610073 + MER41A LTR ERV1 1 554 0 1134 281 42 17 chr9 29663188 29663590 -112607854 - LTR16B LTR ERVL 0 464 53 1226 310 69 30 chr9 29663726 29664332 -112607112 + L2 LINE L2 73 702 -2612 1675 268 76 107 chr9 29664341 29665039 -112606405 + L2 LINE L2 1481 2124 -1190 2269 104 0 13 chr9 29665039 29665338 -112606106 - AluSx SINE Alu -17 295 1 1675 268 76 107 chr9 29665338 29665935 -112605509 + L2 LINE L2 2124 2737 -577 627 95 9 35 chr9 29666722 29666838 -112604606 + MSTA-int LTR MaLR 1468 1580 0 1830 151 143 11 chr9 29666838 29667216 -112604228 + MSTA LTR MaLR 1 428 0 274 255 71 51 chr9 29667329 29667427 -112604017 + L2 LINE L2 3173 3272 0 1841 172 40 36 chr9 29667448 29667995 -112603449 + MLT2A2 LTR ERVL 1 552 -2 395 314 208 20 chr9 29668166 29668469 -112602975 + L3 LINE CR1 1213 1572 -5 24 67 0 0 chr9 29669702 29669747 -112601697 + AT_rich Low_complexity Low_complexity 1 45 0 1975 128 25 7 chr9 29670815 29671097 -112600347 + AluSc SINE Alu 1 287 -22 3765 112 102 0 chr9 29671151 29671785 -112599659 + L1P LINE L1 3943 4641 -1505 1047 81 0 0 chr9 29671788 29671937 -112599507 - L1PA8 LINE L1 -78 6094 5946 317 303 0 38 chr9 29672360 29672492 -112598952 + L1ME LINE L1 5604 5730 -391 2338 104 3 0 chr9 29673257 29673565 -112597879 + AluSg SINE Alu 1 309 -1 326 328 40 50 chr9 29673956 29674154 -112597290 + L2 LINE L2 3118 3313 0 379 207 51 12 chr9 29674690 29674787 -112596657 + MIR3 SINE MIR 57 159 -49 244 232 62 45 chr9 29674826 29674938 -112596506 + MER117 DNA MER1_type 2 115 -82 180 374 55 11 chr9 29675900 29675991 -112595453 + L2 LINE L2 3005 3099 -173 281 24 49 0 chr9 29676048 29676089 -112595355 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 453 271 54 50 chr9 29677511 29677732 -112593712 - L1ME4a LINE L1 -47 6074 5853 763 190 11 82 chr9 29677740 29677924 -112593520 - MER58B DNA MER1_type 0 341 171 1160 220 20 57 chr9 29679026 29679380 -112592064 - MER58B DNA MER1_type 0 341 1 240 35 0 0 chr9 29679545 29679574 -112591870 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 248 248 139 20 chr9 29680155 29680256 -112591188 + L2 LINE L2 3193 3305 -8 28 48 0 0 chr9 29681439 29681481 -112589963 + AT_rich Low_complexity Low_complexity 1 42 0 397 214 97 10 chr9 29682277 29682380 -112589064 - MER94 DNA DNA -19 115 4 276 138 69 0 chr9 29682738 29682796 -112588648 - MER96B DNA MER1_type? -1 416 355 352 303 107 8 chr9 29684667 29684789 -112586655 + L2 LINE L2 3137 3270 -2 8263 137 13 5 chr9 29685490 29686961 -112584483 - L1P LINE L1 -1859 4287 2805 2828 198 19 68 chr9 29686971 29687934 -112583510 - L1P3 LINE L1 -4735 1140 571 1083 111 0 0 chr9 29688664 29688817 -112582627 - MER41C LTR ERV1 -401 153 1 482 302 73 0 chr9 29688978 29689170 -112582274 - MIR SINE MIR -56 206 1 2408 194 36 27 chr9 29689315 29689868 -112581576 + MER74A LTR ERVL 1 558 0 189 213 0 0 chr9 29690606 29690653 -112580791 + GA-rich Low_complexity Low_complexity 6 52 0 664 213 0 22 chr9 29690727 29690863 -112580581 + FLAM_A SINE Alu 1 133 0 383 273 93 48 chr9 29691032 29691386 -112580058 + HAL1b LINE L1 236 500 -848 21 36 0 0 chr9 29691637 29691665 -112579779 + AT_rich Low_complexity Low_complexity 1 28 0 1701 157 20 17 chr9 29691819 29692112 -112579332 + AluJb SINE Alu 2 295 -17 269 266 237 30 chr9 29693386 29693555 -112577889 + MIR SINE MIR 14 217 -45 291 114 0 0 chr9 29693737 29693781 -112577663 + (TG)n Simple_repeat Simple_repeat 1 44 0 348 197 113 63 chr9 29693909 29694051 -112577393 - L1MEc LINE L1 -4614 1782 1634 4306 202 44 25 chr9 29696002 29696216 -112575228 - L1MD2 LINE L1 -1 6358 6149 369 43 0 0 chr9 29696216 29696263 -112575181 + (TC)n Simple_repeat Simple_repeat 2 48 0 4306 202 44 25 chr9 29696263 29697273 -112574171 - L1MD2 LINE L1 -210 6149 5118 286 55 0 73 chr9 29697275 29697330 -112574114 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 461 162 0 0 chr9 29697335 29697409 -112574035 - AluJb SINE Alu -60 252 179 206 213 0 0 chr9 29697431 29697478 -112573966 + G-rich Low_complexity Low_complexity 1 47 0 8806 114 4 64 chr9 29697578 29699206 -112572238 - L1P LINE L1 -1386 4760 3230 695 102 62 55 chr9 29699211 29699339 -112572105 + L1PA11 LINE L1 6042 6170 -4 753 312 48 45 chr9 29699460 29699797 -112571647 + L2 LINE L2 2935 3272 0 2711 108 0 12 chr9 29700443 29700861 -112570583 + LTR46-int LTR ERV1 2957 3369 -3616 221 333 0 32 chr9 29701226 29701319 -112570125 - L2 LINE L2 -50 3222 3133 2166 144 28 0 chr9 29701396 29701750 -112569694 + THE1B LTR MaLR 1 364 0 27 29 0 0 chr9 29702129 29702163 -112569281 + AT_rich Low_complexity Low_complexity 1 34 0 370 266 86 22 chr9 29702238 29702377 -112569067 - MIR SINE MIR -10 252 105 226 250 10 10 chr9 29702862 29702962 -112568482 + CT-rich Low_complexity Low_complexity 4 103 0 183 42 0 0 chr9 29702969 29702993 -112568451 + (TCCA)n Simple_repeat Simple_repeat 2 25 0 2094 109 42 0 chr9 29703678 29704009 -112567435 + L1PA13 LINE L1 5800 6144 -19 304 272 29 10 chr9 29704876 29704979 -112566465 - L2 LINE L2 -192 3080 2976 480 244 25 125 chr9 29705021 29705300 -112566144 + MIR SINE MIR 12 262 0 2514 83 37 35 chr9 29706041 29706415 -112565029 - THE1C LTR MaLR 0 375 1 354 302 56 8 chr9 29706512 29706638 -112564806 - MIR SINE MIR -116 146 15 805 255 159 34 chr9 29706806 29707061 -112564383 + MER69 DNA AcHobo 137 457 -2069 1406 171 98 14 chr9 29707061 29707348 -112564096 - AluJb SINE Alu -1 311 1 805 255 159 34 chr9 29707348 29707476 -112563968 + MER69 DNA AcHobo 457 568 -1958 * 1123 231 111 6 chr9 29707464 29707940 -112563504 + MER69 DNA AcHobo 2000 2525 -1 2682 138 5 14 chr9 29707956 29708399 -112563045 - L1PA16 LINE L1 -10 6156 5718 1704 95 67 21 chr9 29708927 29709212 -112562232 - MER1B DNA MER1_type 0 339 42 708 265 51 10 chr9 29709658 29709854 -112561590 + MIR SINE MIR 38 241 -21 237 340 21 21 chr9 29709885 29709979 -112561465 + L2 LINE L2 2973 3066 -206 296 291 75 22 chr9 29711207 29711341 -112560103 + L3 LINE CR1 1223 1363 -214 408 194 8 108 chr9 29711357 29711486 -112559958 - MER94 DNA DNA -18 116 1 239 256 37 24 chr9 29711617 29711699 -112559745 - MER5B DNA MER1_type -79 99 17 36 0 0 0 chr9 29711811 29711847 -112559597 + AT_rich Low_complexity Low_complexity 1 36 0 839 195 0 6 chr9 29711847 29712016 -112559428 - L1PB1 LINE L1 -4 6147 5980 5552 87 12 4 chr9 29712526 29713702 -112557742 - L1P3 LINE L1 -442 5730 4552 336 349 54 0 chr9 29713947 29714096 -112557348 - L2 LINE L2 -1 3271 3115 314 320 178 18 chr9 29714791 29715016 -112556428 + L1ME LINE L1 5590 5850 -271 598 187 41 142 chr9 29715080 29715326 -112556118 - L1MD1 LINE L1 -11 6231 6011 948 223 27 0 chr9 29715327 29715583 -112555861 - L1 LINE L1 -2882 3264 3002 2082 133 23 0 chr9 29715586 29715886 -112555558 - AluSx SINE Alu -5 307 1 8413 163 14 57 chr9 29715904 29717890 -112553554 + L1M1 LINE L1 3566 5472 -748 250 304 88 47 chr9 29718228 29718376 -112553068 - MIR3 SINE MIR -6 202 49 461 322 17 17 chr9 29718393 29718570 -112552874 + MER5B DNA MER1_type 1 177 -1 205 348 75 25 chr9 29719912 29720073 -112551371 - L3 LINE CR1 -62 1515 1347 486 288 62 0 chr9 29720101 29720247 -112551197 - MER63 DNA MER1_type -276 786 6 229 315 0 22 chr9 29720252 29720344 -112551100 - L3 LINE CR1 -263 1314 1225 227 335 118 19 chr9 29720396 29720557 -112550887 + MIR SINE MIR 86 262 0 1414 226 160 63 chr9 29721071 29721641 -112549803 + MLT1E1 LTR MaLR 23 647 -7 187 320 122 27 chr9 29721649 29721796 -112549648 - L3 LINE CR1 -329 1248 1088 229 283 50 50 chr9 29722842 29722941 -112548503 - MIR SINE MIR -65 143 45 21 0 0 0 chr9 29723023 29723044 -112548400 + AT_rich Low_complexity Low_complexity 1 21 0 184 218 91 36 chr9 29723264 29723319 -112548125 - L2 LINE L2 -1 3271 3214 433 192 23 100 chr9 29723330 29723460 -112547984 - Charlie7 DNA MER1_type -474 2138 2019 935 211 31 75 chr9 29723474 29723792 -112547652 - Charlie7 DNA MER1_type -814 1798 1495 13401 116 18 16 chr9 29723951 29726011 -112545433 - LTR46-int LTR ERV1 -1425 5560 3498 231 61 0 0 chr9 29726300 29726333 -112545111 + (TC)n Simple_repeat Simple_repeat 1 33 0 813 186 169 0 chr9 29726419 29726591 -112544853 - MER3 DNA MER1_type -8 201 1 1652 239 70 25 chr9 29727122 29727637 -112543807 + MER68 LTR ERV1 1 538 -24 204 176 0 0 chr9 29727832 29727866 -112543578 + L2 LINE L2 3264 3297 -16 261 75 0 0 chr9 29729956 29729996 -112541448 + (A)n Simple_repeat Simple_repeat 1 40 0 376 239 132 48 chr9 29730015 29730182 -112541262 + MIR SINE MIR 50 230 -32 289 250 12 0 chr9 29731624 29731704 -112539740 - LTR58 LTR ERV1 -249 430 350 508 256 30 54 chr9 29734181 29734349 -112537095 + MIR3 SINE MIR 31 194 -14 2661 156 66 10 chr9 29734774 29735262 -112536182 - MLT2B2 LTR ERVL 0 515 1 1972 154 170 29 chr9 29735940 29736394 -112535050 + MLT2B1 LTR ERVL 1 518 -2 2146 141 123 5 chr9 29737159 29737542 -112533902 + MSTA LTR MaLR 1 428 0 28 0 0 0 chr9 29738166 29738194 -112533250 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr9 29738307 29738340 -112533104 + (CA)n Simple_repeat Simple_repeat 2 34 0 2184 263 94 33 chr9 29738372 29739634 -112531810 + L1MEc LINE L1 745 2083 -4313 180 0 54 54 chr9 29740292 29740329 -112531115 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2436 52 0 0 chr9 29740331 29740621 -112530823 - AluY SINE Alu -21 290 1 261 193 53 0 chr9 29741229 29741286 -112530158 - MIR SINE MIR -96 166 107 315 0 0 0 chr9 29742085 29742120 -112529324 + (TA)n Simple_repeat Simple_repeat 1 35 0 334 268 113 7 chr9 29742212 29742354 -112529090 - MIR SINE MIR 0 262 106 220 349 9 19 chr9 29742594 29742700 -112528744 - MER5A DNA MER1_type -14 175 71 302 357 77 32 chr9 29743410 29743721 -112527723 + L3 LINE CR1 142 466 -1111 313 331 22 29 chr9 29744214 29744353 -112527091 - L1ME3 LINE L1 -231 5931 5794 253 216 0 0 chr9 29744421 29744472 -112526972 + MER33 DNA MER1_type 41 91 -233 303 205 58 42 chr9 29744487 29744620 -112526824 - L1ME3 LINE L1 -388 5776 5643 382 320 17 6 chr9 29744785 29744963 -112526481 - L1M4 LINE L1 -1470 4676 4497 422 295 97 15 chr9 29745288 29745762 -112525682 - L1M4 LINE L1 -2464 3682 3170 25 51 0 0 chr9 29747058 29747097 -112524347 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr9 29748058 29748079 -112523365 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr9 29748743 29748767 -112522677 + (T)n Simple_repeat Simple_repeat 1 24 0 377 353 153 12 chr9 29750368 29750617 -112520827 + L3 LINE CR1 1032 1315 -262 192 250 115 73 chr9 29750793 29750889 -112520555 - L2 LINE L2 -6 3307 3208 188 236 139 0 chr9 29751398 29751470 -112519974 - MIR SINE MIR -34 228 147 1292 189 100 17 chr9 29751938 29752297 -112519147 - Charlie2 DNA MER1_type -618 2244 1856 255 317 29 0 chr9 29752299 29752403 -112519041 - Charlie2 DNA MER1_type -2537 325 219 344 171 57 34 chr9 29752406 29752494 -112518950 + MIR SINE MIR 106 195 -67 709 205 160 65 chr9 29752791 29753098 -112518346 - MLT1C LTR MaLR -131 336 1 194 337 59 10 chr9 29754232 29754333 -112517111 - L2 LINE L2 -40 3273 3168 7180 39 10 2 chr9 29755495 29756625 -112514819 - L1PA5 LINE L1 -15 6139 5002 323 55 0 55 chr9 29756918 29756973 -112514471 + (T)n Simple_repeat Simple_repeat 1 52 0 6102 97 11 5 chr9 29756996 29758121 -112513323 - L1PB1 LINE L1 0 6151 5027 477 0 0 0 chr9 29759319 29759372 -112512072 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 745 243 88 68 chr9 29759384 29759538 -112511906 + MIR SINE MIR 2 164 -98 1736 54 54 17 chr9 29759538 29759777 -112511667 - AluY SINE Alu 0 311 64 745 243 88 68 chr9 29759777 29759873 -112511571 + MIR SINE MIR 164 257 -5 24 0 0 0 chr9 29760299 29760323 -112511121 + AT_rich Low_complexity Low_complexity 1 24 0 314 273 129 22 chr9 29760704 29760843 -112510601 + MIR3 SINE MIR 38 191 -17 833 299 61 30 chr9 29761925 29762319 -112509125 + MLT1I LTR MaLR 1 406 -3 5731 108 28 3 chr9 29762602 29764045 -112507399 + L1PA13 LINE L1 4686 6159 -4 1760 191 22 19 chr9 29765402 29765768 -112505676 - L1MC1 LINE L1 -1 6332 5966 750 53 0 0 chr9 29765768 29765862 -112505582 - AluSg/x SINE Alu -18 294 201 3929 193 17 12 chr9 29765862 29767231 -112504213 - L1MC1 LINE L1 -408 5925 4546 1558 210 58 6 chr9 29767231 29767578 -112503866 + MLT1A1 LTR MaLR 1 365 0 3929 193 17 12 chr9 29767578 29767608 -112503836 - L1MC1 LINE L1 -1787 4546 4518 819 214 22 39 chr9 29767612 29767841 -112503603 - L1MC1 LINE L1 -1922 4224 4000 1622 153 0 0 chr9 29767864 29768099 -112503345 - AluSx SINE Alu -57 255 21 1316 253 51 0 chr9 29768104 29768475 -112502969 - L1MC1 LINE L1 -2451 3695 3306 508 305 103 14 chr9 29768478 29768701 -112502743 + MLT1K LTR MaLR 346 588 0 255 232 0 18 chr9 29770628 29770684 -112500760 + (TG)n Simple_repeat Simple_repeat 2 56 0 294 136 37 0 chr9 29771501 29771582 -112499862 + CT-rich Low_complexity Low_complexity 2 85 0 225 281 146 12 chr9 29771738 29771820 -112499624 + L3 LINE CR1 1368 1460 -117 233 192 0 0 chr9 29771820 29771872 -112499572 - L1ME LINE L1 -470 5694 5643 4563 249 56 14 chr9 29771930 29773646 -112497798 - L1ME LINE L1 -644 5520 3742 521 256 104 15 chr9 29773802 29774122 -112497322 + L1MEc LINE L1 2014 2317 -3898 198 91 0 0 chr9 29774193 29774226 -112497218 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 262 267 0 76 chr9 29774245 29774350 -112497094 - L1M4 LINE L1 -976 5170 5074 5132 153 27 19 chr9 29774464 29775894 -112495550 + L1PB4 LINE L1 4716 6156 0 2123 101 3 22 chr9 29775928 29776244 -112495200 + AluSg SINE Alu 1 310 0 602 257 77 50 chr9 29777172 29777534 -112493910 + L1ME LINE L1 5282 5653 -468 27 0 0 0 chr9 29779100 29779127 -112492317 + AT_rich Low_complexity Low_complexity 1 27 0 273 299 117 30 chr9 29779285 29779482 -112491962 - L1ME LINE L1 -287 5834 5621 339 324 20 0 chr9 29780609 29780711 -112490733 - ERVL LTR ERVL -463 5301 5198 292 344 132 21 chr9 29780969 29781257 -112490187 - ERVL LTR ERVL -865 4899 4580 429 305 53 102 chr9 29781288 29781852 -112489592 - L2 LINE L2 -209 3063 2532 853 316 193 10 chr9 29781853 29782650 -112488794 - L2 LINE L2 -1096 2218 1276 268 323 54 38 chr9 29782943 29783129 -112488315 + L2 LINE L2 2788 2976 -338 203 311 67 44 chr9 29783328 29783508 -112487936 - L2 LINE L2 -1116 2198 2015 831 317 134 15 chr9 29785063 29785518 -112485926 + L2 LINE L2 2605 3176 -137 2048 152 24 24 chr9 29785518 29785892 -112485552 - THE1C LTR MaLR 0 375 2 831 317 134 15 chr9 29785892 29786049 -112485395 + L2 LINE L2 3176 3313 0 639 287 57 18 chr9 29786329 29786611 -112484833 + L1ME4a LINE L1 5508 5800 -321 21 36 0 0 chr9 29786670 29786698 -112484746 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 29786826 29786849 -112484595 + AT_rich Low_complexity Low_complexity 1 23 0 257 211 35 35 chr9 29786963 29787020 -112484424 - L2 LINE L2 -3 3269 3213 302 281 37 0 chr9 29787458 29787540 -112483904 + L2 LINE L2 3227 3311 -2 306 275 0 12 chr9 29789306 29789386 -112482058 + GA-rich Low_complexity Low_complexity 3 81 0 302 329 98 21 chr9 29789450 29789593 -112481851 + L1ME4a LINE L1 5968 6121 0 1322 222 37 53 chr9 29790864 29791243 -112480201 + MLT1A2 LTR MaLR 2 374 0 23 0 0 0 chr9 29792232 29792255 -112479189 + AT_rich Low_complexity Low_complexity 1 23 0 367 244 152 24 chr9 29792511 29792675 -112478769 - MIR SINE MIR -76 186 2 25 31 0 0 chr9 29794228 29794260 -112477184 + AT_rich Low_complexity Low_complexity 1 32 0 2100 91 0 7 chr9 29795254 29795529 -112475915 + AluSc SINE Alu 1 273 -36 198 0 0 0 chr9 29795531 29795553 -112475891 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 363 258 45 8 chr9 29800240 29800372 -112471072 + MER103 DNA DNA 8 144 -22 420 307 80 62 chr9 29804882 29805107 -112466337 + MIR SINE MIR 2 230 -32 430 272 123 32 chr9 29806102 29806418 -112465026 + L1ME4a LINE L1 4125 4469 -1677 21 0 0 0 chr9 29806466 29806487 -112464957 + AT_rich Low_complexity Low_complexity 1 21 0 340 333 161 19 chr9 29806535 29807006 -112464438 + L1ME4a LINE L1 4628 5165 -981 317 343 102 46 chr9 29807115 29807398 -112464046 + L1ME4a LINE L1 5349 5647 -2161 2250 110 68 11 chr9 29807554 29807909 -112463535 + THE1C LTR MaLR 1 375 0 435 247 44 28 chr9 29807971 29808153 -112463291 + L1ME4a LINE L1 5934 6118 -3 3633 164 52 46 chr9 29808167 29808783 -112462661 - L1MA4A LINE L1 -5 6306 5641 613 73 12 0 chr9 29808783 29808865 -112462579 - THE1A LTR MaLR 0 355 273 3633 164 52 46 chr9 29808865 29809180 -112462264 - L1MA4A LINE L1 -670 5641 5329 1870 234 69 66 chr9 29809453 29810035 -112461409 - L1ME3 LINE L1 -41 6190 5611 2323 65 7 13 chr9 29810035 29810341 -112461103 - AluSp SINE Alu -9 304 1 1870 234 69 66 chr9 29810341 29810910 -112460534 - L1ME3 LINE L1 -620 5611 5045 1616 177 21 14 chr9 29810910 29811198 -112460246 + AluJo SINE Alu 1 290 -22 1870 234 69 66 chr9 29811198 29811390 -112460054 - L1ME3 LINE L1 -1186 5045 4855 2151 113 0 3 chr9 29811390 29811692 -112459752 - AluSc SINE Alu -8 301 1 1870 234 69 66 chr9 29811692 29811946 -112459498 - L1ME3 LINE L1 -1376 4855 4583 3983 251 64 36 chr9 29811959 29812545 -112458899 - L1ME3 LINE L1 -1890 4325 3757 1680 172 36 30 chr9 29812545 29812882 -112458562 + MER44D DNA MER2_type 1 609 0 3983 251 64 36 chr9 29812882 29814151 -112457293 - L1ME3 LINE L1 -2458 3757 2417 580 255 77 34 chr9 29814669 29815057 -112456387 - L1ME3 LINE L1 -3945 2451 2047 1703 148 28 1 chr9 29815059 29815399 -112456045 + MER47A DNA MER2_type 2 366 0 252 274 53 42 chr9 29815408 29815503 -112455941 - L1ME3 LINE L1 -4363 2033 1938 752 348 85 22 chr9 29815504 29816045 -112455399 - L2 LINE L2 -343 2971 2397 180 319 21 0 chr9 29817175 29817222 -112454222 + MIR SINE MIR 45 92 -170 339 272 39 19 chr9 29820049 29820152 -112451292 + MIR SINE MIR 103 207 -55 2848 88 0 0 chr9 29820462 29820850 -112450594 + L1PA8 LINE L1 5785 6172 0 410 117 26 26 chr9 29821273 29821350 -112450094 - MLT1J1 LTR MaLR -19 427 351 * 784 301 118 20 chr9 29821332 29821628 -112449816 - MLT1J2 LTR MaLR -123 327 3 223 352 162 0 chr9 29822184 29822289 -112449155 - L2 LINE L2 -8 3264 3143 500 272 123 48 chr9 29822339 29822736 -112448708 + L1ME4a LINE L1 5675 6101 -20 30 45 0 0 chr9 29822946 29822990 -112448454 + AT_rich Low_complexity Low_complexity 1 44 0 590 277 17 23 chr9 29823610 29823787 -112447657 - MIR SINE MIR -59 203 28 225 0 0 0 chr9 29823801 29823826 -112447618 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 377 252 61 29 chr9 29823830 29823996 -112447448 - MIR SINE MIR -51 157 14 282 281 47 23 chr9 29824227 29824355 -112447089 + MER94 DNA DNA 1 131 -3 210 338 148 24 chr9 29824963 29825173 -112446271 + MIR SINE MIR 21 256 -6 22 0 0 0 chr9 29825179 29825201 -112446243 + AT_rich Low_complexity Low_complexity 1 22 0 228 316 8 26 chr9 29825280 29825397 -112446047 + CT-rich Low_complexity Low_complexity 2 116 0 1906 142 0 23 chr9 29825486 29825788 -112445656 - AluSx SINE Alu -17 295 1 1009 238 26 27 chr9 29826965 29827327 -112444117 + MLT2B2 LTR ERVL 106 515 0 302 271 21 42 chr9 29827429 29827525 -112443919 - MER5A DNA MER1_type -83 106 13 428 256 28 126 chr9 29829453 29829668 -112441776 + MER63A DNA MER1_type 12 205 -5 803 202 50 55 chr9 29830089 29830307 -112441137 + MIR SINE MIR 24 240 -22 218 246 16 16 chr9 29830404 29830465 -112440979 + MER5A DNA MER1_type 108 168 -21 514 292 139 5 chr9 29830588 29830790 -112440654 - MIR SINE MIR -30 232 4 1973 195 0 11 chr9 29832440 29832809 -112438635 + MLT1A1 LTR MaLR 1 365 0 516 314 167 10 chr9 29832989 29833193 -112438251 - MIR SINE MIR -15 247 12 552 323 100 23 chr9 29835312 29835532 -112435912 - MIR SINE MIR -6 256 20 411 73 0 0 chr9 29835634 29835689 -112435755 + (A)n Simple_repeat Simple_repeat 1 55 0 238 254 32 0 chr9 29836496 29836559 -112434885 + (CATA)n Simple_repeat Simple_repeat 2 66 0 892 257 45 29 chr9 29836561 29836806 -112434638 - MIR SINE MIR -6 256 8 404 269 80 51 chr9 29836821 29836996 -112434448 + MIR SINE MIR 33 212 -50 215 325 0 25 chr9 29837548 29837628 -112433816 - L2 LINE L2 -6 3307 3230 196 333 0 60 chr9 29837653 29837737 -112433707 + MIR SINE MIR 68 146 -62 * 232 339 59 59 chr9 29837735 29837853 -112433591 - MIR3 SINE MIR -78 130 13 435 183 97 0 chr9 29838895 29838988 -112432456 - MIR SINE MIR -77 185 84 289 255 62 90 chr9 29839508 29839653 -112431791 + MIR SINE MIR 10 150 -112 213 320 48 10 chr9 29841146 29841249 -112430195 + MIR SINE MIR 82 188 -74 270 179 0 0 chr9 29841376 29841432 -112430012 + CT-rich Low_complexity Low_complexity 3 58 0 475 216 137 10 chr9 29841436 29841538 -112429906 - FLAM_A SINE Alu -18 115 1 6742 45 11 1 chr9 29841967 29842806 -112428638 - L1PA5 LINE L1 -14 6140 5294 809 301 39 27 chr9 29842837 29843169 -112428275 + L2 LINE L2 2361 2696 -618 243 338 208 22 chr9 29843176 29843493 -112427951 + L2 LINE L2 2883 3258 -55 339 25 0 0 chr9 29843545 29843585 -112427859 + (TG)n Simple_repeat Simple_repeat 1 40 0 501 325 108 10 chr9 29843785 29843988 -112427456 - MIR SINE MIR -28 234 12 403 150 12 12 chr9 29844255 29844335 -112427109 + MER116 DNA Mariner 1 80 0 360 315 98 16 chr9 29844690 29844874 -112426570 - MIR SINE MIR -61 201 3 224 292 111 0 chr9 29846491 29846563 -112424881 - L2 LINE L2 -6 3307 3228 23 54 0 0 chr9 29846702 29846739 -112424705 + AT_rich Low_complexity Low_complexity 1 37 0 814 170 12 55 chr9 29847491 29847656 -112423788 + AluJb SINE Alu 137 294 -18 2351 195 68 8 chr9 29847899 29848514 -112422930 + L1MA4 LINE L1 2629 3280 -2866 1195 180 138 22 chr9 29848521 29848974 -112422470 + LTR60 LTR ERV1 1 577 -9 4463 177 52 23 chr9 29849140 29850122 -112421322 + L1MA4 LINE L1 3288 4297 -1849 * 4928 140 55 11 chr9 29850121 29851004 -112420440 + L1MA4 LINE L1 5379 6300 0 247 348 59 0 chr9 29851505 29851623 -112419821 + MIR SINE MIR 17 141 -121 188 267 0 0 chr9 29851694 29851739 -112419705 - L2 LINE L2 -11 3261 3217 22 35 0 0 chr9 29852104 29852133 -112419311 + AT_rich Low_complexity Low_complexity 1 29 0 863 226 60 154 chr9 29852148 29852596 -112418848 + MLT1G LTR MaLR 1 403 -139 1869 137 6 38 chr9 29852596 29852910 -112418534 + AluSx SINE Alu 1 304 -8 863 226 60 154 chr9 29852910 29852940 -112418504 + MLT1G LTR MaLR 403 434 -108 324 0 0 0 chr9 29853536 29853572 -112417872 + (GA)n Simple_repeat Simple_repeat 2 37 0 390 40 0 0 chr9 29853950 29854000 -112417444 - MADE1 DNA Mariner -30 50 1 230 250 0 0 chr9 29854467 29854511 -112416933 + polypurine Low_complexity Low_complexity 3 46 0 207 315 14 14 chr9 29854704 29854777 -112416667 - L2 LINE L2 -4 3268 3196 301 261 17 119 chr9 29855524 29855700 -112415744 - MIR3 SINE MIR -32 176 19 4336 164 26 49 chr9 29856775 29857426 -112414018 + MER6 DNA MER2_type 4 668 -197 465 34 0 0 chr9 29857426 29857485 -112413959 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4336 164 26 49 chr9 29857485 29857571 -112413873 + MER6 DNA MER2_type 668 754 -111 2049 64 0 12 chr9 29857571 29857821 -112413623 - AluY SINE Alu -25 286 40 4336 164 26 49 chr9 29857821 29857964 -112413480 + MER6 DNA MER2_type 754 865 0 31 26 0 0 chr9 29858374 29858412 -112413032 + AT_rich Low_complexity Low_complexity 1 38 0 225 379 26 17 chr9 29858414 29858530 -112412914 + L2 LINE L2 3148 3264 -8 197 333 0 0 chr9 29858734 29858782 -112412662 + L2 LINE L2 3246 3293 -20 24 32 0 0 chr9 29859813 29859844 -112411600 + AT_rich Low_complexity Low_complexity 1 31 0 338 282 0 0 chr9 29861028 29861099 -112410345 - L2 LINE L2 0 3313 3243 186 284 0 45 chr9 29861221 29861288 -112410156 - MIR3 SINE MIR -4 204 141 3728 200 77 21 chr9 29862523 29864268 -112407176 + L1MB7 LINE L1 4092 5936 -242 262 164 0 0 chr9 29864284 29864338 -112407106 + L1MB7 LINE L1 6079 6132 -46 1574 157 23 33 chr9 29864766 29865065 -112406379 + AluJo SINE Alu 1 296 -16 566 286 33 22 chr9 29866982 29867164 -112404280 - MER5A DNA MER1_type -5 184 1 416 244 65 8 chr9 29868710 29868833 -112402611 - L1MC/D LINE L1 -433 5731 5602 276 212 71 47 chr9 29868872 29868957 -112402487 + L1ME1 LINE L1 6062 6148 -18 290 323 123 62 chr9 29869915 29870191 -112401253 - L2 LINE L2 0 3313 3021 9288 178 29 23 chr9 29870610 29873011 -112398433 + L1PA15 LINE L1 3318 5719 -446 2135 144 41 0 chr9 29873022 29873384 -112398060 + L1PA15 LINE L1 5787 6163 -2 271 284 23 23 chr9 29873920 29874008 -112397436 + MIR3 SINE MIR 73 160 -48 227 352 34 34 chr9 29874004 29874180 -112397264 + MER5A DNA MER1_type 13 188 -1 * 3659 262 85 25 chr9 29874324 29874383 -112397061 - L1MCb LINE L1 -2471 4093 4039 1621 158 0 0 chr9 29874383 29874682 -112396762 + AluSx SINE Alu 38 336 0 3659 262 85 25 chr9 29874682 29876735 -112394709 - L1MCb LINE L1 -2525 4039 1884 3717 206 83 145 chr9 29876776 29878251 -112393193 - L1MCb LINE L1 -4851 1194 3 299 322 23 0 chr9 29878328 29878415 -112393029 + MER91A DNA MER1_type 1 89 -107 401 288 142 52 chr9 29879970 29880182 -112391262 + L2 LINE L2 2674 2904 -410 600 169 181 12 chr9 29880458 29880618 -112390826 - MER5A DNA MER1_type 0 189 3 206 375 0 0 chr9 29880668 29880740 -112390704 + MIR SINE MIR 30 101 -107 474 269 192 16 chr9 29881280 29881473 -112389971 - MIR SINE MIR -26 236 10 530 292 72 15 chr9 29881680 29881875 -112389569 + MIR SINE MIR 57 262 0 817 184 80 2 chr9 29882659 29882925 -112388519 + MER2 DNA MER2_type 14 344 -1 378 284 124 12 chr9 29883305 29883474 -112387970 - MER5A DNA MER1_type 0 189 2 204 277 151 17 chr9 29883814 29883933 -112387511 + MIR SINE MIR 128 262 0 28 29 0 0 chr9 29885453 29885488 -112385956 + AT_rich Low_complexity Low_complexity 1 35 0 480 119 76 0 chr9 29885489 29885589 -112385855 - L1MA7 LINE L1 -11 6289 6166 487 257 88 29 chr9 29885592 29885763 -112385681 + MIR SINE MIR 20 200 -62 316 317 31 37 chr9 29886630 29886791 -112384653 - MIR SINE MIR -47 215 56 22 70 0 0 chr9 29888844 29888887 -112382557 + AT_rich Low_complexity Low_complexity 1 43 0 300 27 0 0 chr9 29889979 29890016 -112381428 + (CA)n Simple_repeat Simple_repeat 2 38 0 215 327 53 114 chr9 29891473 29891834 -112379610 + L2 LINE L2 2934 3272 0 639 246 67 42 chr9 29891926 29892166 -112379278 - MIR SINE MIR -10 252 7 2657 24 0 0 chr9 29892511 29892808 -112378636 + AluYa5 SINE Alu 1 297 -14 180 0 0 0 chr9 29894524 29894544 -112376900 + (T)n Simple_repeat Simple_repeat 1 20 0 396 254 156 15 chr9 29894740 29894945 -112376499 - MIR SINE MIR -17 245 12 195 336 98 49 chr9 29894967 29895089 -112376355 - L2 LINE L2 -19 3253 3126 581 227 45 61 chr9 29896035 29896233 -112375211 + MIR SINE MIR 26 220 -42 682 203 150 72 chr9 29897700 29898100 -112373344 - L1MC5 LINE L1 -48 7913 7483 204 266 114 0 chr9 29898265 29898344 -112373100 + MIR SINE MIR 86 173 -89 674 260 51 11 chr9 29900403 29900580 -112370864 - MER5A DNA MER1_type -1 188 5 469 329 60 16 chr9 29901598 29901847 -112369597 + MIR SINE MIR 3 262 0 429 274 181 18 chr9 29901992 29902273 -112369171 + L1ME4a LINE L1 4564 4890 -1256 366 311 112 25 chr9 29902773 29903014 -112368430 + L1ME4a LINE L1 5710 5971 -150 487 330 126 20 chr9 29903870 29904313 -112367131 - L2 LINE L2 -469 2845 2356 363 306 36 9 chr9 29904318 29904429 -112367015 - L2 LINE L2 -33 3280 3167 440 232 76 32 chr9 29904460 29904645 -112366799 + L1MC4a LINE L1 7383 7575 -233 185 206 111 48 chr9 29905622 29905685 -112365759 - L2 LINE L2 -58 3255 3189 182 370 37 0 chr9 29906808 29906889 -112364555 - MIR SINE MIR -81 127 44 556 345 57 59 chr9 29907030 29907488 -112363956 - L2 LINE L2 -8 3264 2808 427 281 14 58 chr9 29907720 29907859 -112363585 - MER5B DNA MER1_type -1 177 45 233 175 0 0 chr9 29909988 29910028 -112361416 - LTR3b LTR ERVK 0 500 461 3100 144 19 4 chr9 29910030 29910509 -112360935 - LTR3b LTR ERVK -14 486 1 497 245 27 34 chr9 29911348 29911495 -112359949 + MER103 DNA DNA 20 165 -1 229 289 0 0 chr9 29911610 29911700 -112359744 - L1MC4 LINE L1 -1339 6703 6614 210 143 0 0 chr9 29911704 29911739 -112359705 + (TA)n Simple_repeat Simple_repeat 2 36 0 276 396 97 21 chr9 29911902 29912190 -112359254 + L2 LINE L2 2950 3259 -13 280 286 73 38 chr9 29912584 29912871 -112358573 + Charlie7 DNA MER1_type 329 625 -1987 331 168 19 75 chr9 29913001 29913108 -112358336 + Charlie7 DNA MER1_type 2510 2610 -2 284 43 21 43 chr9 29913164 29913211 -112358233 + LTR14B LTR ERVK 1 46 -562 * 1901 100 121 48 chr9 29913199 29913570 -112357874 + LTR14B LTR ERVK 211 608 0 257 292 14 0 chr9 29914001 29914073 -112357371 + MIR SINE MIR 13 85 -177 646 266 116 13 chr9 29914474 29914707 -112356737 - MIR SINE MIR -2 260 4 253 291 186 42 chr9 29914952 29915313 -112356131 + L2 LINE L2 2882 3294 -19 553 191 0 0 chr9 29915383 29915477 -112355967 + L1PB4 LINE L1 6033 6126 -30 440 269 231 16 chr9 29915860 29916046 -112355398 + MIR SINE MIR 1 226 -36 314 202 107 12 chr9 29916517 29916601 -112354843 - L1MC4 LINE L1 -1339 6703 6612 346 184 30 18 chr9 29916601 29916769 -112354675 + (TA)n Simple_repeat Simple_repeat 1 170 0 22 56 0 0 chr9 29916776 29916812 -112354632 + AT_rich Low_complexity Low_complexity 1 36 0 861 186 93 44 chr9 29916822 29917070 -112354374 - L1MB7 LINE L1 0 6184 5925 182 254 0 18 chr9 29917431 29917486 -112353958 - L2 LINE L2 -2 3311 3258 * 188 170 0 113 chr9 29917485 29917538 -112353906 - MIR SINE MIR -75 187 141 620 196 0 0 chr9 29917538 29917640 -112353804 - FLAM_A SINE Alu -15 127 26 387 331 42 7 chr9 29917641 29917783 -112353661 - MIR SINE MIR -113 149 3 349 214 20 92 chr9 29919379 29919477 -112351967 + L2 LINE L2 3223 3313 0 23 33 0 0 chr9 29919655 29919685 -112351759 + AT_rich Low_complexity Low_complexity 1 30 0 203 147 0 0 chr9 29919826 29919860 -112351584 + MIR SINE MIR 118 151 -111 249 291 33 62 chr9 29921567 29921717 -112349727 + MIR SINE MIR 12 159 -49 348 269 15 33 chr9 29921900 29922030 -112349414 - MIR SINE MIR -61 201 78 1345 176 68 84 chr9 29922270 29922650 -112348794 - MLT1A2 LTR MaLR 0 374 1 286 271 0 68 chr9 29922742 29922860 -112348584 - MIR SINE MIR -56 206 97 458 214 68 17 chr9 29922956 29923073 -112348371 - L2 LINE L2 0 3313 3191 266 271 75 9 chr9 29923330 29923437 -112348007 + L2 LINE L2 3192 3305 -8 1576 187 16 26 chr9 29924807 29925117 -112346327 - AluJo SINE Alu -5 307 1 193 348 22 87 chr9 29925745 29925883 -112345561 - MIR3 SINE MIR -74 134 6 26 64 0 0 chr9 29925912 29925959 -112345485 + AT_rich Low_complexity Low_complexity 1 47 0 279 228 94 76 chr9 29927339 29927510 -112343934 + MIR SINE MIR 63 236 -26 528 287 28 6 chr9 29927660 29927841 -112343603 - HsTC2a DNA Tc2 -172 570 386 615 205 0 8 chr9 29927848 29927970 -112343474 + FLAM_C SINE Alu 1 121 -22 1118 261 39 36 chr9 29927983 29928373 -112343071 - HsTC2a DNA Tc2 -347 397 7 263 321 64 28 chr9 29928513 29928622 -112342822 - L2 LINE L2 -5 3267 3155 187 320 10 68 chr9 29928710 29928813 -112342631 - MIR3 SINE MIR -40 168 72 45 62 0 0 chr9 29929020 29929100 -112342344 + AT_rich Low_complexity Low_complexity 1 80 0 516 240 140 43 chr9 29929277 29929577 -112341867 - L1ME3 LINE L1 -211 5951 5623 433 286 68 39 chr9 29929583 29930046 -112341398 - L1M1 LINE L1 -621 5543 5102 342 286 40 29 chr9 29930791 29930985 -112340459 - L1MEc LINE L1 -900 1676 1452 187 85 34 51 chr9 29931883 29931942 -112339502 + GA-rich Low_complexity Low_complexity 2 59 0 575 310 214 36 chr9 29932375 29932673 -112338771 + L3 LINE CR1 62 306 -1271 2151 89 24 7 chr9 29932673 29932964 -112338480 + AluSp SINE Alu 2 297 -16 575 310 214 36 chr9 29932964 29933414 -112338030 + L3 LINE CR1 306 943 -634 1408 349 82 14 chr9 29933813 29934862 -112336582 + L2 LINE L2 2183 3313 0 1161 146 33 38 chr9 29935171 29935384 -112336060 - MER20 DNA MER1_type 0 219 8 544 297 47 18 chr9 29935689 29935935 -112335509 + MIR SINE MIR 13 262 0 180 0 0 0 chr9 29936279 29936299 -112335145 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 222 213 0 0 chr9 29936831 29936878 -112334566 + CT-rich Low_complexity Low_complexity 2 48 0 387 177 0 0 chr9 29937641 29937703 -112333741 + MLT2E LTR ERVL 32 93 -535 221 342 13 0 chr9 29937705 29937781 -112333663 + MIR SINE MIR 178 254 -8 22 35 0 0 chr9 29938157 29938186 -112333258 + AT_rich Low_complexity Low_complexity 1 29 0 318 259 189 14 chr9 29938660 29938803 -112332641 - MIR SINE MIR -89 173 6 417 314 26 7 chr9 29939073 29939226 -112332218 - MIR SINE MIR -26 236 81 334 192 51 0 chr9 29939983 29940061 -112331383 + L1MC4a LINE L1 5808 5889 -1919 1184 264 198 35 chr9 29940969 29941423 -112330021 + MLT1H LTR MaLR 6 533 -16 399 273 97 26 chr9 29942146 29942300 -112329144 + MIR SINE MIR 40 204 -58 315 0 0 0 chr9 29942307 29942342 -112329102 + (CA)n Simple_repeat Simple_repeat 2 36 0 26105 46 8 1 chr9 29942730 29946813 -112324631 + L1PA5 LINE L1 2046 6154 0 819 315 28 8 chr9 29946962 29947213 -112324231 - MIR SINE MIR 0 262 7 230 396 0 0 chr9 29947545 29947641 -112323803 + MIR SINE MIR 167 262 0 22 35 0 0 chr9 29947664 29947693 -112323751 + AT_rich Low_complexity Low_complexity 1 29 0 204 292 0 0 chr9 29948102 29948150 -112323294 + L2 LINE L2 3208 3255 -17 189 0 0 0 chr9 29948632 29948653 -112322791 + (GA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr9 29949096 29949119 -112322325 + AT_rich Low_complexity Low_complexity 1 23 0 4491 45 9 0 chr9 29949459 29950038 -112321406 + L1P LINE L1 4783 5366 -780 1281 192 0 5 chr9 29950038 29950262 -112321182 + AluJo SINE Alu 78 300 -12 377 323 46 15 chr9 29950266 29950396 -112321048 + MIR SINE MIR 122 255 -7 346 299 160 27 chr9 29950518 29950705 -112320739 - MLT1I LTR MaLR -197 212 1 6854 20 0 0 chr9 29951148 29951936 -112319508 + L1HS LINE L1 5352 6139 -16 221 0 35 0 chr9 29951936 29951965 -112319479 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 10953 108 9 2 chr9 29952442 29954895 -112316549 - L1PA8 LINE L1 0 6172 3710 469 296 66 15 chr9 29954964 29955149 -112316295 + MIR SINE MIR 65 256 -6 303 254 44 35 chr9 29956343 29956457 -112314987 - MIR3 SINE MIR -7 201 87 294 298 105 84 chr9 29956534 29956973 -112314471 - L2 LINE L2 -16 3297 2850 352 324 147 0 chr9 29956982 29957152 -112314292 - MIR SINE MIR -6 256 62 1406 189 36 102 chr9 29957574 29957626 -112313818 - MLT1B LTR MaLR -4 386 332 1880 157 49 12 chr9 29957626 29957951 -112313493 - MER1B DNA MER1_type 0 337 1 1406 189 36 102 chr9 29957951 29958311 -112313133 - MLT1B LTR MaLR -58 332 1 414 249 50 99 chr9 29958352 29958553 -112312891 + L2 LINE L2 3118 3308 -5 249 98 0 0 chr9 29959564 29959605 -112311839 + (A)n Simple_repeat Simple_repeat 1 41 0 1319 265 114 28 chr9 29960102 29960584 -112310860 - MLT1H LTR MaLR 0 542 1 218 264 160 90 chr9 29963439 29963583 -112307861 + L2 LINE L2 3108 3261 -11 393 328 191 33 chr9 29963667 29964398 -112307046 - L2 LINE L2 -14 3299 2468 434 105 13 0 chr9 29965443 29965519 -112305925 - L1MB8 LINE L1 -7 6171 6095 1897 156 6 19 chr9 29965522 29965836 -112305608 - AluSx SINE Alu 0 312 3 6580 26 0 0 chr9 29966015 29966816 -112304628 - L1PA3 LINE L1 -3 6152 5352 288 300 161 28 chr9 29967259 29967439 -112304005 + MLT1I LTR MaLR 1 204 -205 370 323 46 15 chr9 29967568 29967698 -112303746 - MIR SINE MIR -7 255 122 1312 192 0 5 chr9 29967702 29967926 -112303518 - AluJo SINE Alu -12 300 78 3127 30 2 0 chr9 29967926 29968333 -112303111 - L1P LINE L1 -780 5366 4959 5831 100 8 6 chr9 29968438 29969301 -112302143 + L1PA8 LINE L1 5308 6172 0 221 0 35 0 chr9 29969778 29969807 -112301637 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 40342 31 22 1 chr9 29969807 29975748 -112295696 - L1HS LINE L1 -16 6139 73 299 95 0 0 chr9 29975839 29975881 -112295563 + L1PA10 LINE L1 5540 5581 -587 1752 116 8 4 chr9 29975881 29976131 -112295313 + L1PA10 LINE L1 5902 6161 -7 598 99 77 0 chr9 29977129 29977220 -112294224 - AluSg/x SINE Alu -125 187 90 557 315 71 21 chr9 29977246 29977484 -112293960 + MIR SINE MIR 13 262 0 21 0 0 0 chr9 29980174 29980195 -112291249 + AT_rich Low_complexity Low_complexity 1 21 0 231 361 118 6 chr9 29980303 29980472 -112290972 - MIR SINE MIR -70 192 5 2327 81 7 10 chr9 29981553 29981848 -112289596 - AluY SINE Alu -17 294 1 431 218 61 87 chr9 29985032 29985261 -112286183 + MLT1H LTR MaLR 74 296 -253 301 296 72 8 chr9 29985696 29985821 -112285623 + MIR SINE MIR 15 147 -115 509 286 32 38 chr9 29985984 29986169 -112285275 - MIR3 SINE MIR -5 203 20 1790 232 50 56 chr9 29986654 29987211 -112284233 + MLT2B3 LTR ERVL 1 554 0 309 332 30 62 chr9 29989814 29989958 -112281486 + MIR SINE MIR 17 154 -67 469 232 87 7 chr9 29991255 29991393 -112280051 - L2 LINE L2 -960 2354 2206 666 312 194 13 chr9 29991588 29992145 -112279299 + L2 LINE L2 2052 2709 -605 249 196 139 76 chr9 29993714 29993872 -112277572 + L2 LINE L2 3098 3265 -48 333 282 12 12 chr9 29994135 29994220 -112277224 - MER91A DNA MER1_type 0 196 112 1957 186 60 55 chr9 29994604 29995081 -112276363 + MLT2B1 LTR ERVL 6 488 -32 261 0 0 0 chr9 29995081 29995110 -112276334 + (CA)n Simple_repeat Simple_repeat 2 30 0 1957 186 60 55 chr9 29995110 29995144 -112276300 + MLT2B1 LTR ERVL 488 520 0 23 0 0 0 chr9 29995200 29995223 -112276221 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr9 29995460 29995487 -112275957 + AT_rich Low_complexity Low_complexity 1 27 0 440 298 44 63 chr9 29995854 29996059 -112275385 - MIR SINE MIR -28 234 34 312 351 155 65 chr9 29998365 29998732 -112272712 + L2 LINE L2 2835 3234 -38 31 68 0 0 chr9 29998793 29998852 -112272592 + AT_rich Low_complexity Low_complexity 1 59 0 366 263 28 50 chr9 29999176 29999361 -112272083 + MER20B DNA MER1_type 17 202 -17 2039 110 14 3 chr9 29999517 29999807 -112271637 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr9 30001784 30001805 -112269639 + AT_rich Low_complexity Low_complexity 1 21 0 286 293 0 20 chr9 30001903 30002002 -112269442 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 225 346 9 20 chr9 30002187 30002339 -112269105 + MER5B DNA MER1_type 1 159 -30 266 180 16 0 chr9 30003513 30003574 -112267870 + CT-rich Low_complexity Low_complexity 1 62 0 288 263 0 0 chr9 30004456 30004536 -112266908 + L1M1 LINE L1 3539 3618 -3947 210 297 14 0 chr9 30005133 30005207 -112266237 + MIR SINE MIR 21 95 -167 545 88 12 0 chr9 30007095 30007175 -112264269 + AluSc SINE Alu 4 84 -225 1553 141 61 64 chr9 30007185 30008155 -112263289 + SVA Other Other 434 868 -783 1584 114 0 0 chr9 30008259 30008470 -112262974 + AluSc SINE Alu 73 283 -26 353 338 5 5 chr9 30009034 30009238 -112262206 + L1ME LINE L1 3762 3965 -2181 205 204 23 0 chr9 30009277 30009321 -112262123 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 647 298 101 62 chr9 30009567 30009972 -112261472 + L1ME LINE L1 4298 4686 -1460 2235 140 23 52 chr9 30009972 30010414 -112261030 + MSTB1 LTR MaLR 1 429 -3 647 298 101 62 chr9 30010414 30010908 -112260536 + L1ME LINE L1 4686 5312 -834 235 200 36 0 chr9 30011015 30011070 -112260374 + L1ME LINE L1 5539 5595 -526 236 261 72 0 chr9 30011294 30011363 -112260081 + L2 LINE L2 3218 3291 -22 375 308 39 0 chr9 30013296 30013400 -112258044 + L2 LINE L2 2636 2743 -571 1743 217 19 3 chr9 30013558 30013917 -112257527 + MLT1A1 LTR MaLR 1 365 0 311 237 89 82 chr9 30014257 30014392 -112257052 - MIR SINE MIR -21 241 106 10858 102 15 3 chr9 30014468 30015964 -112255480 - THE1B-int LTR MaLR -66 1514 1 1666 119 218 16 chr9 30015964 30016267 -112255177 - THE1B LTR MaLR 0 364 1 649 143 0 0 chr9 30017333 30017445 -112253999 - L1MA7 LINE L1 0 6291 6180 319 343 46 0 chr9 30018559 30018667 -112252777 + L2 LINE L2 3201 3313 0 23 33 0 0 chr9 30019822 30019852 -112251592 + AT_rich Low_complexity Low_complexity 1 30 0 543 304 103 5 chr9 30022229 30022433 -112249011 - MIR SINE MIR -13 249 26 210 335 106 59 chr9 30023971 30024055 -112247389 - L2 LINE L2 0 3272 3193 216 86 0 0 chr9 30024055 30024090 -112247354 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 210 335 106 59 chr9 30024090 30024175 -112247269 - L2 LINE L2 -79 3193 3095 * 250 192 291 46 chr9 30024155 30024306 -112247138 + MIR SINE MIR 10 197 -65 546 287 35 59 chr9 30025038 30025263 -112246181 - L1MEc LINE L1 -6027 369 153 1739 172 0 20 chr9 30025263 30025566 -112245878 - AluSx SINE Alu -11 301 5 546 287 35 59 chr9 30025566 30025681 -112245763 - L1MEc LINE L1 -6243 153 37 338 232 61 20 chr9 30026043 30026142 -112245302 + MLT1K LTR MaLR 435 537 -51 270 311 8 0 chr9 30026823 30026919 -112244525 - L2 LINE L2 -12 3260 3203 24 0 0 0 chr9 30027032 30027056 -112244388 + AT_rich Low_complexity Low_complexity 1 24 0 673 209 32 19 chr9 30027412 30027570 -112243874 - L2 LINE L2 -4 3309 3150 234 217 12 60 chr9 30027615 30027698 -112243746 - L2 LINE L2 -1559 1755 1677 663 302 142 30 chr9 30027703 30028041 -112243403 + L2 LINE L2 2935 3310 -3 181 244 90 64 chr9 30028138 30028216 -112243228 - MIR SINE MIR -39 223 144 2092 171 146 9 chr9 30028432 30028876 -112242568 - MLT1D LTR MaLR 0 505 1 2282 60 16 44 chr9 30029611 30029929 -112241515 + AluY SINE Alu 2 310 -1 2745 7 0 0 chr9 30029993 30030291 -112241153 + AluYa5 SINE Alu 1 298 -13 287 321 0 9 chr9 30030295 30030407 -112241037 - MIR SINE MIR -36 226 116 201 159 0 0 chr9 30032359 30032403 -112239041 + (CA)n Simple_repeat Simple_repeat 1 44 0 247 336 187 0 chr9 30032598 30032705 -112238739 + L2 LINE L2 3137 3263 -9 380 84 0 42 chr9 30032755 30032774 -112238670 + (GA)n Simple_repeat Simple_repeat 1 19 -49 222 62 0 0 chr9 30032774 30032806 -112238638 + (TG)n Simple_repeat Simple_repeat 1 32 0 380 84 0 42 chr9 30032806 30032857 -112238587 + (GA)n Simple_repeat Simple_repeat 19 68 0 341 331 14 14 chr9 30033215 30033354 -112238090 - MLT2E LTR ERVL -450 178 40 185 338 14 27 chr9 30033906 30033980 -112237464 + L2 LINE L2 2710 2782 -532 394 315 31 8 chr9 30034483 30034610 -112236834 - MIR SINE MIR -50 212 83 488 261 33 7 chr9 30035376 30035529 -112235915 + MIR SINE MIR 106 262 0 296 207 96 0 chr9 30035642 30035737 -112235707 - MIR SINE MIR -62 146 88 282 115 39 39 chr9 30037131 30037209 -112234235 + (CTATA)n Simple_repeat Simple_repeat 3 80 0 483 60 5 101 chr9 30037211 30037410 -112234034 + (TA)n Simple_repeat Simple_repeat 1 180 0 323 126 45 18 chr9 30037469 30037580 -112233864 + (CTATA)n Simple_repeat Simple_repeat 2 115 0 180 77 0 0 chr9 30038704 30038730 -112232714 + (CA)n Simple_repeat Simple_repeat 1 26 0 893 230 11 0 chr9 30039289 30039476 -112231968 + MER5A DNA MER1_type 1 189 0 489 103 13 0 chr9 30039648 30039726 -112231718 - L1PA8A LINE L1 -1634 4512 4434 * 6384 89 14 1 chr9 30039718 30041304 -112230140 + L1PA8A LINE L1 4514 6111 -20 718 255 25 6 chr9 30041338 30041499 -112229945 + MER58A DNA MER1_type 1 164 0 420 264 54 36 chr9 30041784 30041951 -112229493 - MER117 DNA MER1_type -23 174 5 188 254 26 9 chr9 30042407 30042521 -112228923 + GA-rich Low_complexity Low_complexity 1 116 0 240 59 0 0 chr9 30042821 30042855 -112228589 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1924 282 44 42 chr9 30044259 30045091 -112226353 - L2 LINE L2 -6 3307 2471 2062 134 3 0 chr9 30045091 30045390 -112226054 + AluSx SINE Alu 1 300 -12 1924 282 44 42 chr9 30045390 30045541 -112225903 - L2 LINE L2 -842 2471 2322 1347 75 0 0 chr9 30047096 30047349 -112224095 + (GGAA)n Simple_repeat Simple_repeat 1 253 0 2095 176 0 11 chr9 30047997 30048356 -112223088 + MLT1A1 LTR MaLR 1 355 -10 204 245 19 0 chr9 30049170 30049223 -112222221 + CT-rich Low_complexity Low_complexity 4 57 0 180 314 129 14 chr9 30049224 30049294 -112222150 - L2 LINE L2 -9 3304 3227 1049 299 128 8 chr9 30049296 30049811 -112221633 + L2 LINE L2 1886 2462 -852 187 133 44 0 chr9 30049867 30049912 -112221532 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr9 30049985 30050012 -112221432 + AT_rich Low_complexity Low_complexity 1 27 0 33 25 0 0 chr9 30050994 30051034 -112220410 + AT_rich Low_complexity Low_complexity 1 40 0 1243 269 73 21 chr9 30051261 30051822 -112219622 - MLT1G1 LTR MaLR 0 567 1 697 266 94 5 chr9 30051934 30052137 -112219307 - MIR SINE MIR -29 233 13 388 315 50 57 chr9 30052204 30052642 -112218802 + L1MC/D LINE L1 2154 2588 -3558 312 321 32 43 chr9 30053129 30053316 -112218128 + L1MC/D LINE L1 3288 3472 -2674 284 274 47 58 chr9 30053474 30053748 -112217696 + L1MC/D LINE L1 3692 3962 -2184 728 326 87 72 chr9 30053836 30054385 -112217059 + L1MC/D LINE L1 4080 4619 -1527 2171 170 18 18 chr9 30054385 30054820 -112216624 + L1MA4 LINE L1 5852 6286 -14 728 326 87 72 chr9 30054820 30055495 -112215949 + L1MC/D LINE L1 4619 5322 -824 388 306 89 12 chr9 30055507 30055755 -112215689 + L1MC/D LINE L1 5392 5658 -2150 191 267 253 0 chr9 30056465 30056540 -112214904 - L3 LINE CR1 -11 1566 1473 282 240 0 80 chr9 30056785 30056885 -112214559 + L2 LINE L2 3181 3272 0 2542 55 3 0 chr9 30056956 30057264 -112214180 - AluY SINE Alu -2 309 1 5562 11 0 2 chr9 30058705 30059337 -112212107 - L1PA2 LINE L1 -2 6153 5523 222 150 0 0 chr9 30059413 30059453 -112211991 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1684 181 66 36 chr9 30059554 30059918 -112211526 - MLT1C LTR MaLR -91 376 2 223 333 16 32 chr9 30059918 30060041 -112211403 - MER5A DNA MER1_type -68 121 1 221 244 105 47 chr9 30060298 30060384 -112211060 + MIR SINE MIR 84 174 -88 318 303 71 0 chr9 30060565 30060664 -112210780 + L2 LINE L2 3192 3297 -16 344 284 26 26 chr9 30061502 30061657 -112209787 + MER103 DNA DNA 3 157 -9 195 204 0 0 chr9 30061850 30061894 -112209550 + (CA)n Simple_repeat Simple_repeat 2 45 0 605 289 93 21 chr9 30062918 30063198 -112208246 + L2 LINE L2 2934 3233 -80 2028 131 55 0 chr9 30063527 30063817 -112207627 + AluSg SINE Alu 1 306 -4 724 295 117 38 chr9 30066167 30066670 -112204774 - HAL1 LINE L1 -1948 559 12 23 0 0 0 chr9 30068415 30068438 -112203006 + AT_rich Low_complexity Low_complexity 1 23 0 260 297 0 0 chr9 30069432 30069506 -112201938 + CT-rich Low_complexity Low_complexity 4 77 0 364 91 0 18 chr9 30069561 30069616 -112201828 + MADE1 DNA Mariner 27 80 0 391 308 45 45 chr9 30069901 30070057 -112201387 - MIR SINE MIR -101 161 6 1090 197 5 0 chr9 30070268 30070476 -112200968 - MER3 DNA MER1_type 0 209 1 491 307 104 10 chr9 30172776 30172968 -112098476 - MIR SINE MIR -12 250 41 25 0 0 0 chr9 30173553 30173578 -112097866 + AT_rich Low_complexity Low_complexity 1 25 0 23821 77 2 0 chr9 30173692 30176852 -112094592 + L1PA5 LINE L1 1 3164 -2982 7110 53 1 2 chr9 30176852 30178278 -112093166 + L1PA5 LINE L1 4725 6150 -4 419 120 13 13 chr9 30178290 30178365 -112093079 - MADE1 DNA Mariner 0 80 6 3169 106 4 4 chr9 30178423 30178876 -112092568 - MLT2A2 LTR ERVL 0 453 1 229 280 0 27 chr9 30179067 30179142 -112092302 + MLT1L LTR MaLR 1 73 -542 180 0 0 0 chr9 30179645 30179665 -112091779 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1189 223 66 39 chr9 30180970 30181418 -112090026 + MLT1D LTR MaLR 1 505 0 456 344 20 29 chr9 30181544 30181788 -112089656 - L1MC/D LINE L1 -2071 5737 5496 237 286 78 13 chr9 30181934 30182011 -112089433 + MIR SINE MIR 28 109 -153 283 292 46 82 chr9 30182011 30182206 -112089238 - MER5A DNA MER1_type 0 189 2 2125 109 7 7 chr9 30182577 30182880 -112088564 - AluSc SINE Alu -6 303 1 1507 145 4 4 chr9 30183028 30183256 -112088188 + AluSx SINE Alu 1 228 -84 516 321 65 11 chr9 30183850 30184034 -112087410 - MIR SINE MIR -68 194 1 28 48 0 0 chr9 30184092 30184134 -112087310 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr9 30185687 30185711 -112085733 + AT_rich Low_complexity Low_complexity 1 24 0 258 333 0 0 chr9 30185909 30185981 -112085463 + (CATA)n Simple_repeat Simple_repeat 2 73 0 205 368 38 38 chr9 30187096 30187229 -112084215 + L2 LINE L2 3132 3264 -8 374 308 82 14 chr9 30187418 30187564 -112083880 - MIR3 SINE MIR -33 175 20 856 263 42 70 chr9 30187871 30188183 -112083261 + L3 LINE CR1 1096 1398 -179 190 318 63 0 chr9 30188257 30188320 -112083124 + L3 LINE CR1 1506 1572 -5 2050 36 0 0 chr9 30189560 30189807 -112081637 - L1PA3 LINE L1 -1063 5083 4837 7641 24 0 0 chr9 30189807 30190895 -112080549 + L1PA3 LINE L1 5088 6175 0 224 363 41 47 chr9 30191102 30191273 -112080171 + MIR SINE MIR 26 195 -67 468 139 0 0 chr9 30192535 30192614 -112078830 + (TA)n Simple_repeat Simple_repeat 2 80 0 342 0 0 0 chr9 30192614 30192652 -112078792 + (CA)n Simple_repeat Simple_repeat 1 38 0 251 219 122 12 chr9 30193337 30193419 -112078025 + MIR SINE MIR 172 262 0 378 307 117 6 chr9 30193976 30194139 -112077305 + MER5A DNA MER1_type 9 189 0 239 297 14 14 chr9 30194421 30194495 -112076949 - L2 LINE L2 -251 3062 2989 548 326 179 18 chr9 30194576 30195033 -112076411 - L2 LINE L2 -454 2860 2330 688 289 72 20 chr9 30195037 30195286 -112076158 + MIR SINE MIR 1 262 0 186 365 0 0 chr9 30195283 30195346 -112076098 - L2 LINE L2 -990 2324 2262 * 2420 28 0 0 chr9 30195923 30196227 -112075217 + AluY SINE Alu 1 304 0 276 331 62 19 chr9 30196762 30196922 -112074522 + MIR SINE MIR 78 244 -18 243 319 80 9 chr9 30196970 30197083 -112074361 - MIR SINE MIR -48 214 94 602 254 133 21 chr9 30197431 30197710 -112073734 - MER5C DNA MER1_type 0 324 15 22 0 0 0 chr9 30198429 30198451 -112072993 + AT_rich Low_complexity Low_complexity 1 22 0 273 57 0 0 chr9 30199051 30199086 -112072358 + (TG)n Simple_repeat Simple_repeat 1 35 0 929 240 65 25 chr9 30200295 30200620 -112070824 - L1ME3A LINE L1 -23 6147 5810 586 244 118 33 chr9 30200649 30200919 -112070525 - L1ME3A LINE L1 -464 5698 5406 1168 209 105 51 chr9 30200926 30201356 -112070088 + MSTB2 LTR MaLR 5 457 0 350 183 63 7 chr9 30201506 30201648 -112069796 + (TA)n Simple_repeat Simple_repeat 1 150 0 603 194 15 0 chr9 30202221 30202355 -112069089 - L1MB3 LINE L1 0 6183 6048 339 222 30 20 chr9 30202356 30202455 -112068989 - L1M4c LINE L1 -4249 2920 2821 4219 231 19 28 chr9 30202500 30203734 -112067710 - L1M4c LINE L1 -4480 2689 1562 252 264 14 14 chr9 30203843 30203915 -112067529 - L1M4c LINE L1 -7094 74 3 36 23 0 0 chr9 30204817 30204860 -112066584 + AT_rich Low_complexity Low_complexity 1 43 0 2200 78 0 7 chr9 30205171 30205454 -112065990 + AluY SINE Alu 1 281 -30 6325 131 27 9 chr9 30205747 30206882 -112064562 - L1MA3 LINE L1 0 6305 5148 1993 217 150 43 chr9 30206882 30207628 -112063816 + LTR1B LTR ERV1 1 826 0 6325 131 27 9 chr9 30207628 30207710 -112063734 - L1MA3 LINE L1 -1157 5148 5069 317 301 9 18 chr9 30209348 30209461 -112061983 + MER94 DNA DNA 8 119 -15 254 333 15 59 chr9 30209683 30209818 -112061626 + MIR3 SINE MIR 69 197 -11 216 0 0 0 chr9 30210059 30210083 -112061361 + (T)n Simple_repeat Simple_repeat 1 24 0 453 284 39 44 chr9 30210436 30210640 -112060804 + MIR SINE MIR 6 208 -54 207 357 47 62 chr9 30212769 30212898 -112058546 - L2 LINE L2 0 3272 3146 181 152 121 0 chr9 30212996 30213029 -112058415 + L2 LINE L2 3227 3263 -9 185 245 0 20 chr9 30213159 30213208 -112058236 + MIR SINE MIR 156 203 -59 1313 165 34 88 chr9 30214773 30215070 -112056374 + AluJo SINE Alu 7 287 -25 391 307 167 5 chr9 30216210 30216402 -112055042 + MIR SINE MIR 27 249 -13 197 408 11 45 chr9 30216568 30216835 -112054609 - L2 LINE L2 -343 2971 2714 205 146 42 0 chr9 30217883 30217931 -112053513 + (TA)n Simple_repeat Simple_repeat 2 51 0 321 253 0 13 chr9 30218702 30218781 -112052663 + MARNA DNA Mariner 386 463 -123 184 400 11 0 chr9 30218798 30218893 -112052551 + L2 LINE L2 2662 2757 -557 393 299 109 0 chr9 30219214 30219361 -112052083 + L2 LINE L2 3150 3312 -1 193 324 101 73 chr9 30219594 30219813 -112051631 + L2 LINE L2 2830 3054 -218 373 272 19 19 chr9 30219953 30220115 -112051329 + MER103 DNA DNA 3 164 -2 295 360 70 17 chr9 30222157 30222329 -112049115 - MER5A DNA MER1_type -8 181 1 378 0 0 0 chr9 30223423 30223465 -112047979 + (CA)n Simple_repeat Simple_repeat 2 43 0 350 324 227 45 chr9 30224227 30224690 -112046754 - L3 LINE CR1 -667 910 364 324 180 0 0 chr9 30224876 30224926 -112046518 - FLAM SINE Alu -9 124 75 1809 202 34 8 chr9 30224951 30225307 -112046137 - MLT1A1 LTR MaLR 0 365 1 620 317 77 84 chr9 30225369 30225991 -112045453 - L2 LINE L2 -199 3073 2462 227 227 182 45 chr9 30226016 30226104 -112045340 - MIR SINE MIR -155 107 8 318 222 173 0 chr9 30227374 30227455 -112043989 + MIR SINE MIR 13 107 -155 4829 203 103 91 chr9 30227480 30229213 -112042231 - MER52A LTR ERV1 0 1755 3 455 148 0 11 chr9 30230019 30230107 -112041337 - L1MA7 LINE L1 -2 6289 6203 240 206 20 59 chr9 30230159 30230261 -112041183 + L1ME4a LINE L1 5977 6074 -47 232 315 228 20 chr9 30230893 30231042 -112040402 + MER5A DNA MER1_type 7 186 -3 342 0 0 0 chr9 30231208 30231246 -112040198 + (A)n Simple_repeat Simple_repeat 1 38 0 704 210 90 23 chr9 30231294 30231563 -112039881 - MSTD LTR MaLR -62 303 1 23 0 0 0 chr9 30232324 30232347 -112039097 + AT_rich Low_complexity Low_complexity 1 23 0 751 269 152 25 chr9 30232431 30232695 -112038749 - MLT1I LTR MaLR 0 409 85 1763 167 162 8 chr9 30232695 30233066 -112038378 - MSTA LTR MaLR 0 428 1 751 269 152 25 chr9 30233066 30233162 -112038282 - MLT1I LTR MaLR -324 85 3 229 215 0 97 chr9 30233167 30233260 -112038184 - L1MC4 LINE L1 -1300 6742 6659 235 242 48 18 chr9 30233269 30233434 -112038010 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 * 342 174 59 14 chr9 30233319 30233611 -112037833 + (TA)n Simple_repeat Simple_repeat 1 305 0 228 134 0 90 chr9 30233626 30233693 -112037751 + LTR66 LTR ERVL 398 458 -152 2535 206 47 4 chr9 30233825 30234319 -112037125 - MLT2B2 LTR ERVL 0 515 1 2480 206 27 24 chr9 30234853 30234888 -112036556 - MLT2B3 LTR ERVL -3 551 518 525 115 0 0 chr9 30234888 30234975 -112036469 + (TG)n Simple_repeat Simple_repeat 2 88 0 2480 206 27 24 chr9 30234975 30235488 -112035956 - MLT2B3 LTR ERVL -36 518 1 485 279 86 41 chr9 30235532 30235741 -112035703 + LTR33 LTR ERVL 234 460 -61 2377 50 0 0 chr9 30235741 30236076 -112035368 + AluY SINE Alu 1 335 0 485 279 86 41 chr9 30236076 30236134 -112035310 + LTR33 LTR ERVL 460 514 -7 22 0 0 0 chr9 30236256 30236278 -112035166 + AT_rich Low_complexity Low_complexity 1 22 0 818 198 6 73 chr9 30237965 30238142 -112033302 - LTR69 LTR ERVL -102 486 322 4097 93 44 58 chr9 30238163 30238547 -112032897 - L1PB2 LINE L1 0 6151 5780 303 28 0 0 chr9 30238547 30238583 -112032861 + (GA)n Simple_repeat Simple_repeat 2 37 0 4097 93 44 58 chr9 30238583 30238927 -112032517 - L1PB2 LINE L1 -371 5780 5433 34 65 0 0 chr9 30240063 30240125 -112031319 + AT_rich Low_complexity Low_complexity 1 62 0 1445 264 55 66 chr9 30241231 30241426 -112030018 + MLT1F1 LTR MaLR 1 197 -370 378 0 0 0 chr9 30241426 30241468 -112029976 + (TC)n Simple_repeat Simple_repeat 1 42 0 1445 264 55 66 chr9 30241468 30241818 -112029626 + MLT1F1 LTR MaLR 197 565 -2 189 0 0 0 chr9 30242367 30242388 -112029056 + (CA)n Simple_repeat Simple_repeat 1 21 0 339 318 58 40 chr9 30243613 30243786 -112027658 - MIR SINE MIR -72 190 15 486 314 126 18 chr9 30244866 30245089 -112026355 + MIR SINE MIR 3 249 -13 207 278 21 93 chr9 30245282 30245379 -112026065 + L2 LINE L2 3177 3266 -6 437 273 148 0 chr9 30246961 30247137 -112024307 + MIR SINE MIR 2 203 -59 438 164 39 8 chr9 30247138 30247266 -112024178 + (TA)n Simple_repeat Simple_repeat 1 132 0 463 349 68 5 chr9 30247480 30247672 -112023772 - MIR SINE MIR -57 205 2 1069 294 58 27 chr9 30247867 30248350 -112023094 - MLT1H LTR MaLR -2 547 7 4589 199 37 25 chr9 30249291 30250730 -112020714 - L1MB3 LINE L1 -7 6176 4699 887 276 44 0 chr9 30250730 30250955 -112020489 - MER8 DNA MER2_type -1 238 4 4589 199 37 25 chr9 30250955 30251386 -112020058 - L1MB3 LINE L1 -1484 4699 4275 26 30 0 0 chr9 30252648 30252681 -112018763 + AT_rich Low_complexity Low_complexity 1 33 0 240 287 128 49 chr9 30252971 30253135 -112018309 + MIR SINE MIR 15 191 -71 360 222 113 113 chr9 30253777 30253923 -112017521 - MIR SINE MIR -12 250 102 2125 117 0 0 chr9 30253923 30254222 -112017222 + AluSg SINE Alu 3 301 -9 360 222 113 113 chr9 30254222 30254269 -112017175 - MIR SINE MIR -159 103 57 278 370 90 32 chr9 30254583 30254861 -112016583 - L2 LINE L2 0 3313 3020 197 208 104 0 chr9 30256636 30256684 -112014760 - L2 LINE L2 0 3313 3261 393 337 69 29 chr9 30256961 30257207 -112014237 - L2 LINE L2 -438 2876 2621 311 318 53 25 chr9 30257430 30257675 -112013769 - L1ME4a LINE L1 -227 5894 5643 22 35 0 0 chr9 30258115 30258144 -112013300 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr9 30258531 30258581 -112012863 + AT_rich Low_complexity Low_complexity 1 50 0 277 340 11 0 chr9 30258912 30259006 -112012438 - MIR3 SINE MIR -54 154 60 2407 151 7 20 chr9 30259235 30259690 -112011754 - Tigger2 DNA MER2_type 0 2718 1 1040 208 15 30 chr9 30259836 30260100 -112011344 - L1 LINE L1 -1764 4382 4123 * 2044 211 48 80 chr9 30260098 30260308 -112011136 + L1MB5 LINE L1 5300 5515 -668 1568 109 4 21 chr9 30260308 30260546 -112010898 + L1PB3 LINE L1 5914 6147 -7 2044 211 48 80 chr9 30260546 30261166 -112010278 + L1MB5 LINE L1 5515 6183 0 185 0 0 39 chr9 30262298 30262324 -112009120 + (TTTCC)n Simple_repeat Simple_repeat 5 29 0 414 228 14 17 chr9 30262329 30262622 -112008822 + CT-rich Low_complexity Low_complexity 1 292 0 346 235 61 0 chr9 30262641 30262739 -112008705 + MIR3 SINE MIR 105 208 0 297 0 0 0 chr9 30262844 30262877 -112008567 + (CA)n Simple_repeat Simple_repeat 1 33 0 2464 42 3 0 chr9 30263715 30264025 -112007419 - L1PA4 LINE L1 0 6155 5845 253 307 79 79 chr9 30264147 30264375 -112007069 - MIR SINE MIR -1 261 34 245 331 0 24 chr9 30265214 30265338 -112006106 + CT-rich Low_complexity Low_complexity 2 122 0 200 222 0 0 chr9 30265383 30265428 -112006016 + (TA)n Simple_repeat Simple_repeat 1 45 0 1811 126 23 0 chr9 30266080 30266341 -112005103 - AluSx SINE Alu -45 267 1 21 36 0 0 chr9 30267463 30267491 -112003953 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr9 30267570 30267597 -112003847 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 54 0 0 chr9 30268098 30268135 -112003309 + AT_rich Low_complexity Low_complexity 1 37 0 891 300 71 12 chr9 30269026 30269366 -112002078 - LTR33 LTR ERVL -158 363 4 436 287 127 33 chr9 30269433 30269614 -112001830 - MIR SINE MIR -56 206 3 239 143 41 0 chr9 30269889 30269938 -112001506 + GA-rich Low_complexity Low_complexity 4 54 0 6298 82 8 1 chr9 30270474 30271335 -112000109 + L1PA8A LINE L1 5265 6131 0 860 280 14 0 chr9 30271982 30272189 -111999255 + MER63A DNA MER1_type 1 210 0 186 288 0 17 chr9 30272223 30272282 -111999162 - MIR SINE MIR -116 92 35 303 210 30 20 chr9 30272853 30272953 -111998491 - L1ME LINE L1 -668 5453 5353 415 248 29 15 chr9 30273150 30273287 -111998157 - L1ME LINE L1 -437 5684 5546 1034 162 67 46 chr9 30274582 30274651 -111996793 + L1MA8 LINE L1 6002 6068 -223 2526 66 0 0 chr9 30274651 30274954 -111996490 + AluY SINE Alu 1 303 -8 1034 162 67 46 chr9 30274954 30275110 -111996334 + L1MA8 LINE L1 6068 6237 -54 267 31 0 0 chr9 30275110 30275142 -111996302 + (TA)n Simple_repeat Simple_repeat 1 32 0 1034 162 67 46 chr9 30275142 30275199 -111996245 + L1MA8 LINE L1 6237 6291 0 488 335 49 40 chr9 30275583 30275777 -111995667 + L2 LINE L2 2811 3009 -304 2520 57 0 0 chr9 30275777 30276075 -111995369 - AluY SINE Alu -13 298 1 488 335 49 40 chr9 30276075 30276104 -111995340 + L2 LINE L2 3009 3036 -277 23 33 0 0 chr9 30276134 30276164 -111995280 + AT_rich Low_complexity Low_complexity 1 30 0 369 296 0 53 chr9 30276191 30276343 -111995101 + MIR SINE MIR 114 257 -5 278 297 0 0 chr9 30277981 30278055 -111993389 + GA-rich Low_complexity Low_complexity 2 75 0 1385 266 70 36 chr9 30278379 30278796 -111992648 - LTR16C LTR ERVL 0 491 61 271 224 9 93 chr9 30279081 30279188 -111992256 + MIR SINE MIR 103 200 -62 300 216 78 39 chr9 30279227 30279329 -111992115 + L2 LINE L2 3191 3296 -17 230 333 94 38 chr9 30279345 30279504 -111991940 + MIR SINE MIR 20 187 -75 332 266 13 0 chr9 30279622 30279701 -111991743 + MER21B LTR ERV1 17 96 -767 627 204 53 8 chr9 30279746 30279878 -111991566 + MER21B LTR ERV1 103 240 -623 337 276 0 51 chr9 30279898 30279996 -111991448 + MER21B LTR ERV1 344 436 -427 358 322 72 7 chr9 30279996 30280148 -111991296 - MIR SINE MIR -72 190 29 2084 121 13 0 chr9 30280273 30280571 -111990873 - AluSc SINE Alu -7 302 1 270 56 0 0 chr9 30280864 30280900 -111990544 + (CA)n Simple_repeat Simple_repeat 1 36 0 350 272 32 24 chr9 30281215 30281340 -111990104 + L1ME2 LINE L1 6004 6129 -35 237 188 21 0 chr9 30281791 30281839 -111989605 - MIR SINE MIR -111 151 103 186 309 48 0 chr9 30282392 30282476 -111988968 + MIR SINE MIR 175 262 0 29 0 0 0 chr9 30283228 30283257 -111988187 + AT_rich Low_complexity Low_complexity 1 29 0 243 88 0 0 chr9 30283580 30283614 -111987830 + (GA)n Simple_repeat Simple_repeat 2 35 0 395 337 57 5 chr9 30283614 30283807 -111987637 + L1MEd LINE L1 534 736 -5383 775 276 82 44 chr9 30283842 30284317 -111987127 + L1ME3A LINE L1 5397 5889 -281 932 49 81 0 chr9 30284502 30284625 -111986819 - LTR12 LTR ERV1 0 714 582 5003 101 43 73 chr9 30284626 30285476 -111985968 - LTR12 LTR ERV1 -1 825 1 385 308 25 8 chr9 30287362 30287482 -111983962 + L2 LINE L2 3146 3267 -5 308 371 38 0 chr9 30287500 30287659 -111983785 + HAL1b LINE L1 377 541 -807 189 0 0 0 chr9 30288147 30288168 -111983276 + (TA)n Simple_repeat Simple_repeat 1 21 0 333 0 0 0 chr9 30289206 30289243 -111982201 + (CA)n Simple_repeat Simple_repeat 2 38 0 622 268 123 18 chr9 30289591 30289819 -111981625 - MIR SINE MIR -10 252 1 716 270 99 4 chr9 30290299 30290532 -111980912 - MIR SINE MIR -6 256 2 245 100 20 0 chr9 30291247 30291297 -111980147 + (TTTTTG)n Simple_repeat Simple_repeat 1 51 0 323 248 93 47 chr9 30292339 30292468 -111978976 - MER58B DNA MER1_type 0 341 207 472 335 37 20 chr9 30292641 30292886 -111978558 - L3 LINE CR1 -384 1193 945 35 71 0 0 chr9 30293361 30293431 -111978013 + AT_rich Low_complexity Low_complexity 1 70 0 2448 158 37 14 chr9 30294905 30295341 -111976103 - Tigger2 DNA MER2_type 0 2718 2273 385 203 0 0 chr9 30295331 30295400 -111976044 - Tigger2 DNA MER2_type -2649 69 1 * 23 0 0 0 chr9 30295400 30295423 -111976021 + AT_rich Low_complexity Low_complexity 1 23 0 187 316 18 18 chr9 30295650 30295707 -111975737 + MIR SINE MIR 11 67 -195 278 284 14 14 chr9 30295740 30295814 -111975630 - LTR16A LTR ERVL -14 436 363 461 284 38 33 chr9 30295821 30296004 -111975440 - LTR16A1 LTR ERVL -214 243 60 237 33 0 0 chr9 30296208 30296238 -111975206 + (TTCTC)n Simple_repeat Simple_repeat 2 31 0 637 345 35 60 chr9 30296240 30296860 -111974584 - ERVL LTR ERVL -441 5323 4719 374 352 55 36 chr9 30296858 30297259 -111974185 - ERVL LTR ERVL -868 4617 4250 * 429 20 0 0 chr9 30297358 30297408 -111974036 + (TG)n Simple_repeat Simple_repeat 2 51 0 230 308 26 0 chr9 30297673 30297751 -111973693 + MIR SINE MIR 77 156 -106 22 70 0 0 chr9 30298095 30298138 -111973306 + AT_rich Low_complexity Low_complexity 1 43 0 198 71 0 0 chr9 30298263 30298291 -111973153 + (TA)n Simple_repeat Simple_repeat 1 28 0 392 211 0 0 chr9 30298381 30298457 -111972987 + MIR SINE MIR 117 192 -70 2399 90 0 0 chr9 30298580 30298880 -111972564 - AluSq SINE Alu -13 300 1 23 33 0 0 chr9 30299416 30299446 -111971998 + AT_rich Low_complexity Low_complexity 1 30 0 1935 185 34 42 chr9 30299680 30300151 -111971293 - L1MA7 LINE L1 0 6291 5825 21 36 0 0 chr9 30300367 30300395 -111971049 + AT_rich Low_complexity Low_complexity 1 28 0 183 100 0 0 chr9 30300398 30300428 -111971016 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 1526 206 54 9 chr9 30300871 30301220 -111970224 + MLT1A1 LTR MaLR 1 365 0 184 340 0 0 chr9 30302493 30302540 -111968904 + L3 LINE CR1 1060 1106 -471 1051 271 97 98 chr9 30303081 30303602 -111967842 + HAL1 LINE L1 2 522 -1985 2614 51 0 0 chr9 30303602 30303913 -111967531 + AluY SINE Alu 1 311 0 1051 271 97 98 chr9 30303913 30304950 -111966494 + HAL1 LINE L1 522 1559 -948 920 255 90 65 chr9 30304960 30305494 -111965950 + HAL1 LINE L1 1731 2277 -230 33 25 0 0 chr9 30305728 30305768 -111965676 + AT_rich Low_complexity Low_complexity 1 40 0 385 357 106 4 chr9 30305964 30306199 -111965245 + L3 LINE CR1 1232 1490 -87 186 227 0 0 chr9 30306690 30306734 -111964710 + A-rich Low_complexity Low_complexity 4 47 0 472 259 117 25 chr9 30309259 30309421 -111962023 + MIR SINE MIR 21 197 -65 2291 101 7 0 chr9 30309729 30310035 -111961409 + AluSp SINE Alu 1 308 -5 366 183 0 0 chr9 30310222 30310293 -111961151 + (CA)n Simple_repeat Simple_repeat 2 72 0 193 259 65 111 chr9 30310369 30310477 -111960967 + MER5A DNA MER1_type 65 167 -22 285 222 43 103 chr9 30310564 30310681 -111960763 + MIR SINE MIR 71 180 -82 341 204 46 125 chr9 30310891 30311043 -111960401 - MER112 DNA MER1_type -1 259 120 2552 168 95 6 chr9 30311067 30311572 -111959872 - MER44D DNA MER2_type 0 605 1 491 138 38 0 chr9 30311800 30311880 -111959564 + MER44D DNA MER2_type 575 657 -48 410 359 28 38 chr9 30312351 30312604 -111958840 - MIR SINE MIR -2 260 8 308 281 94 23 chr9 30313731 30313859 -111957585 - MIR SINE MIR -20 242 106 212 267 0 40 chr9 30314071 30314146 -111957298 - L2 LINE L2 -6 3307 3236 * 696 237 137 14 chr9 30314142 30314361 -111957083 + MIR SINE MIR 13 258 -4 22 35 0 0 chr9 30315497 30315526 -111955918 + AT_rich Low_complexity Low_complexity 1 29 0 771 288 80 11 chr9 30315617 30315881 -111955563 + L3 LINE CR1 1275 1556 -21 255 330 103 32 chr9 30315951 30316136 -111955308 + MIR SINE MIR 6 203 -59 432 0 0 0 chr9 30317086 30317134 -111954310 + (CA)n Simple_repeat Simple_repeat 1 48 0 * 864 92 0 0 chr9 30317133 30317274 -111954170 + (GA)n Simple_repeat Simple_repeat 2 142 0 37039 33 17 1 chr9 30318335 30324363 -111947081 - L1PA2 LINE L1 -2 6153 1 567 259 12 53 chr9 30324701 30324871 -111946573 - MER5B DNA MER1_type -1 177 15 197 358 0 0 chr9 30324914 30324981 -111946463 + L2 LINE L2 3244 3310 -3 5214 122 49 5 chr9 30325443 30326428 -111945016 + L1PA13 LINE L1 5128 6150 -13 1658 258 39 18 chr9 30327099 30327632 -111943812 - MER119 DNA MER1_type 0 583 6 21 0 0 0 chr9 30327812 30327833 -111943611 + AT_rich Low_complexity Low_complexity 1 21 0 334 261 71 63 chr9 30327842 30328080 -111943364 - L1ME4a LINE L1 -3 6118 5879 27 0 0 0 chr9 30331250 30331277 -111940167 + AT_rich Low_complexity Low_complexity 1 27 0 579 323 84 18 chr9 30332176 30332402 -111939042 - MIR SINE MIR -16 246 6 327 266 62 16 chr9 30332993 30333121 -111938323 - MIR SINE MIR -10 252 119 207 0 0 0 chr9 30333541 30333564 -111937880 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 2429 127 14 0 chr9 30333599 30333969 -111937475 - THE1C LTR MaLR 0 375 1 7466 137 3 16 chr9 30333969 30335129 -111936315 - THE1C-int LTR MaLR 0 1580 435 30 45 0 0 chr9 30335169 30335213 -111936231 + AT_rich Low_complexity Low_complexity 1 44 0 330 251 62 56 chr9 30335253 30335432 -111936012 - L1ME4a LINE L1 -18 6103 5924 27 0 0 0 chr9 30335449 30335476 -111935968 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr9 30335605 30335639 -111935805 + AT_rich Low_complexity Low_complexity 1 34 0 2236 228 44 9 chr9 30335767 30336719 -111934725 + L1MC/D LINE L1 4830 5815 -427 21 0 0 0 chr9 30337405 30337426 -111934018 + AT_rich Low_complexity Low_complexity 1 21 0 340 280 11 0 chr9 30337905 30337998 -111933446 - MIR SINE MIR -10 252 159 418 111 111 0 chr9 30340161 30340233 -111931211 - MADE1 DNA Mariner 0 80 1 1664 191 3 3 chr9 30340696 30340994 -111930450 + AluJb SINE Alu 5 302 -10 32 57 0 0 chr9 30341391 30341444 -111930000 + AT_rich Low_complexity Low_complexity 1 53 0 947 134 23 23 chr9 30342001 30342155 -111929289 + L1MC2 LINE L1 6155 6311 -33 1277 216 45 66 chr9 30342155 30342535 -111928909 - MLT1A2 LTR MaLR -2 372 1 947 134 23 23 chr9 30342535 30342552 -111928892 + L1MC2 LINE L1 6310 6326 -18 289 298 23 38 chr9 30342687 30342818 -111928626 - L2 LINE L2 -186 3086 2958 207 125 0 83 chr9 30342839 30342887 -111928557 - L2 LINE L2 -293 2979 2936 197 341 82 11 chr9 30343858 30344040 -111927404 - L3 LINE CR1 -1303 274 80 327 130 0 0 chr9 30344564 30344618 -111926826 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1828 171 51 14 chr9 30345203 30345553 -111925891 - MLT1A1 LTR MaLR -2 363 1 387 255 26 113 chr9 30345787 30346018 -111925426 - L2 LINE L2 -2 3311 3101 2081 135 0 0 chr9 30346193 30346490 -111924954 + AluSg SINE Alu 1 297 -13 2115 209 53 51 chr9 30346506 30346699 -111924745 - MER67D LTR ERV1 0 514 323 2215 113 36 33 chr9 30346699 30347062 -111924382 - THE1B LTR MaLR 0 364 1 2115 209 53 51 chr9 30347062 30347381 -111924063 - MER67D LTR ERV1 -191 323 1 236 154 19 0 chr9 30347394 30347446 -111923998 + GA-rich Low_complexity Low_complexity 1 53 0 3683 136 55 2 chr9 30347542 30348145 -111923299 - MER41B LTR ERV1 0 635 1 540 228 10 93 chr9 30348188 30348381 -111923063 - MER69A DNA AcHobo 0 177 1 2142 121 0 0 chr9 30348896 30349178 -111922266 - AluSx SINE Alu -28 284 3 356 284 93 12 chr9 30349833 30349995 -111921449 + MIR SINE MIR 2 176 -86 378 0 0 0 chr9 30350017 30350059 -111921385 + (TG)n Simple_repeat Simple_repeat 2 43 0 565 364 148 6 chr9 30350157 30350548 -111920896 - L2 LINE L2 -199 3114 2669 226 231 0 19 chr9 30350939 30350991 -111920453 + LTR67 LTR ERVL 507 557 0 199 211 26 0 chr9 30351039 30351077 -111920367 - MIR SINE MIR -132 76 38 23 33 0 0 chr9 30351424 30351454 -111919990 + AT_rich Low_complexity Low_complexity 1 30 0 413 340 35 7 chr9 30352191 30352335 -111919109 + MIR3 SINE MIR 23 170 -38 305 294 39 0 chr9 30352611 30352632 -111918812 - L1MA10 LINE L1 -2 6332 6312 1181 240 78 0 chr9 30352632 30352940 -111918504 - L1ME1 LINE L1 -15 6151 5820 1093 220 61 45 chr9 30352958 30353271 -111918173 + MLT1E2 LTR MaLR 1 318 -308 505 266 101 28 chr9 30353481 30353699 -111917745 + MIR SINE MIR 29 262 0 191 257 119 79 chr9 30353905 30354006 -111917438 + MIR SINE MIR 11 115 -147 22 0 0 0 chr9 30356295 30356317 -111915127 + AT_rich Low_complexity Low_complexity 1 22 0 739 274 4 90 chr9 30356323 30356589 -111914855 - MIR SINE MIR -4 258 16 299 200 67 22 chr9 30356731 30356821 -111914623 - Charlie7 DNA MER1_type -2518 94 1 1865 118 7 7 chr9 30357077 30357356 -111914088 - AluSg1 SINE Alu -11 298 20 2351 45 0 78 chr9 30357463 30357795 -111913649 - AluY SINE Alu -5 306 1 211 264 167 0 chr9 30357913 30357985 -111913459 + MIR SINE MIR 61 144 -64 2329 64 0 3 chr9 30358264 30358561 -111912883 + AluY SINE Alu 1 296 -15 22 0 0 0 chr9 30360180 30360202 -111911242 + AT_rich Low_complexity Low_complexity 1 22 0 7574 90 15 14 chr9 30360436 30361492 -111909952 + MER11C LTR ERVK 1 1057 -14 2447 246 25 65 chr9 30361754 30362845 -111908599 - L1ME1 LINE L1 -5 6161 5127 20721 30 0 0 chr9 30362902 30366156 -111905288 - L1PA3 LINE L1 0 6155 2902 183 220 0 0 chr9 30366156 30366206 -111905238 + CT-rich Low_complexity Low_complexity 3 52 0 273 350 86 14 chr9 30366220 30366360 -111905084 - L2 LINE L2 -5 3267 3118 365 210 217 7 chr9 30366652 30366790 -111904654 + L1ME2 LINE L1 4479 4645 -1501 * 2214 215 41 20 chr9 30366788 30367401 -111904043 - L1ME1 LINE L1 -1661 4485 3860 318 205 134 18 chr9 30367741 30367853 -111903591 + L1ME2 LINE L1 5574 5698 -466 903 236 38 4 chr9 30367856 30368093 -111903351 + L1ME2 LINE L1 5905 6149 -15 323 248 20 20 chr9 30368103 30368252 -111903192 + (TA)n Simple_repeat Simple_repeat 2 150 0 28 0 0 0 chr9 30368252 30368280 -111903164 + AT_rich Low_complexity Low_complexity 1 28 0 330 238 0 12 chr9 30368295 30368379 -111903065 - LTR67 LTR ERVL 0 557 475 426 174 0 0 chr9 30368538 30368607 -111902837 + Tigger2 DNA MER2_type 1 69 -2649 * 2378 165 23 21 chr9 30368605 30369042 -111902402 + Tigger2 DNA MER2_type 2280 2717 -1 503 290 105 0 chr9 30369538 30369700 -111901744 + MIR SINE MIR 52 230 -32 1720 170 29 0 chr9 30369824 30370101 -111901343 - AluJb SINE Alu -27 285 1 838 239 18 0 chr9 30370314 30370536 -111900908 - L1PA15-16 LINE L1 -4049 2800 2575 12958 32 0 3 chr9 30422134 30424222 -111847222 + L1PA4 LINE L1 3817 5899 -256 579 286 111 24 chr9 30426345 30426722 -111844722 + HAL1 LINE L1 2097 2506 -1 1646 164 124 0 chr9 30427169 30427492 -111843952 - MER47A DNA MER2_type -3 363 1 289 331 30 15 chr9 30427499 30427632 -111843812 + L1MEd LINE L1 455 589 -5530 280 217 86 59 chr9 30427634 30427786 -111843658 + MER53 DNA DNA 1 156 -33 690 0 0 34 chr9 30427886 30427975 -111843469 + AluY SINE Alu 218 303 -8 1232 239 66 37 chr9 30428746 30429127 -111842317 - MSTD LTR MaLR 0 396 5 189 367 135 32 chr9 30432811 30433182 -111838262 + L2 LINE L2 2824 3232 -40 3187 169 38 63 chr9 30433290 30434034 -111837410 - LTR8A LTR ERV1 0 727 3 380 204 0 0 chr9 30434163 30434251 -111837193 + L1PB1 LINE L1 6060 6147 -4 2206 199 2 7 chr9 30434559 30434975 -111836469 + MER47B DNA MER2_type 5 418 0 240 35 0 0 chr9 30435007 30435036 -111836408 + (TG)n Simple_repeat Simple_repeat 2 30 0 2120 156 8 77 chr9 30435253 30435537 -111835907 - L1PA16 LINE L1 -6 6160 5923 2110 95 20 3 chr9 30435537 30435842 -111835602 - AluSg SINE Alu 0 310 1 2120 156 8 77 chr9 30435842 30436052 -111835392 - L1PA16 LINE L1 -243 5923 5700 303 287 88 22 chr9 30436071 30436207 -111835237 - MIR3 SINE MIR -32 176 32 302 305 48 19 chr9 30439128 30439233 -111832211 + L2 LINE L2 3204 3311 -2 552 310 39 0 chr9 30439332 30439487 -111831957 + MIR SINE MIR 49 209 -53 4892 169 29 15 chr9 30441018 30442007 -111829437 - L1MA9 LINE L1 0 6312 5310 1386 263 21 5 chr9 30442042 30442464 -111828980 - L1M2 LINE L1 -4171 2678 2250 1336 171 4 12 chr9 30442481 30442738 -111828706 - L1PA13 LINE L1 -15 6148 5894 699 236 12 19 chr9 30442745 30442906 -111828538 - L1M2 LINE L1 -5979 800 641 288 0 0 0 chr9 30443137 30443169 -111828275 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3665 176 3 11 chr9 30443169 30443821 -111827623 - L1PA16 LINE L1 -24 6142 5496 2333 46 0 11 chr9 30445117 30445401 -111826043 + AluY SINE Alu 8 288 -23 28 0 0 0 chr9 30445448 30445476 -111825968 + AT_rich Low_complexity Low_complexity 1 28 0 2037 86 11 4 chr9 30445482 30445751 -111825693 + AluY SINE Alu 4 274 -37 784 206 111 5 chr9 30446049 30446238 -111825206 + MER3 DNA MER1_type 1 209 0 492 301 0 47 chr9 30447666 30447818 -111823626 + MIR SINE MIR 15 154 -108 1989 124 3 0 chr9 30447818 30448138 -111823306 + AluSx SINE Alu 1 321 0 492 301 0 47 chr9 30448138 30448193 -111823251 + MIR SINE MIR 154 210 -52 219 88 0 0 chr9 30448472 30448506 -111822938 + (T)n Simple_repeat Simple_repeat 1 34 0 313 247 0 52 chr9 30449185 30449282 -111822162 - L1MC4 LINE L1 -1339 6703 6612 366 97 80 0 chr9 30449286 30449399 -111822045 + (TA)n Simple_repeat Simple_repeat 1 122 0 26 0 0 0 chr9 30449437 30449463 -111821981 + AT_rich Low_complexity Low_complexity 1 26 0 1790 158 0 27 chr9 30449989 30450286 -111821158 + AluJb SINE Alu 1 289 -23 26 30 0 0 chr9 30450286 30450319 -111821125 + AT_rich Low_complexity Low_complexity 1 33 0 1279 253 36 39 chr9 30450387 30450802 -111820642 - MLT2D LTR ERVL 0 414 1 889 328 70 37 chr9 30452237 30452752 -111818692 + HAL1 LINE L1 215 746 -1761 35097 37 1 0 chr9 30452806 30457886 -111813558 - L1PA2 LINE L1 -2 6153 1067 1361 271 147 71 chr9 30457888 30459444 -111812000 + HAL1 LINE L1 833 2507 0 231 264 23 11 chr9 30460168 30460255 -111811189 - L1ME LINE L1 -297 5873 5786 635 247 98 51 chr9 30460328 30460757 -111810687 + L1MEd LINE L1 702 1150 -4969 390 300 122 27 chr9 30460841 30461104 -111810340 + L1MEd LINE L1 1282 1569 -4741 361 300 76 34 chr9 30461320 30461624 -111809820 + L1ME LINE L1 5468 5777 -401 2186 124 0 0 chr9 30462233 30462540 -111808904 - AluSc SINE Alu -2 307 1 233 287 62 31 chr9 30462891 30463020 -111808424 + LTR67 LTR ERVL 410 542 -15 3571 156 98 3 chr9 30464111 30464757 -111806687 + MER39 LTR ERV1 1 707 0 468 115 10 7 chr9 30464843 30464931 -111806513 - L1MA8 LINE L1 -326 5976 5888 266 350 43 29 chr9 30465015 30465155 -111806289 + MIR SINE MIR 1 142 -120 204 299 27 102 chr9 30465873 30466020 -111805424 + MIR SINE MIR 117 252 -10 * 234 269 51 26 chr9 30466018 30466096 -111805348 + MIR3 SINE MIR 105 184 -24 211 91 55 36 chr9 30466169 30466224 -111805220 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 23 0 0 0 chr9 30466225 30466248 -111805196 + AT_rich Low_complexity Low_complexity 1 23 0 1867 168 7 0 chr9 30466732 30467041 -111804403 - AluSq SINE Alu -2 311 1 252 365 61 33 chr9 30468107 30468288 -111803156 + MER5A DNA MER1_type 3 188 -1 627 307 130 18 chr9 30468584 30468985 -111802459 + LTR16A LTR ERVL 3 448 -2 1660 174 0 7 chr9 30470402 30470677 -111800767 + AluJb SINE Alu 1 273 -39 330 67 0 0 chr9 30470677 30470722 -111800722 + (GA)n Simple_repeat Simple_repeat 1 45 0 373 315 56 0 chr9 30471609 30471717 -111799727 - L2 LINE L2 -3 3269 3156 22 56 0 0 chr9 30471986 30472022 -111799422 + AT_rich Low_complexity Low_complexity 1 36 0 1124 189 115 72 chr9 30472081 30472430 -111799014 + MLT1A1 LTR MaLR 1 364 -1 216 41 0 82 chr9 30472698 30472747 -111798697 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 275 306 41 8 chr9 30472841 30472962 -111798482 - L1MEc LINE L1 -4742 1568 1255 21 0 0 0 chr9 30473079 30473100 -111798344 + AT_rich Low_complexity Low_complexity 1 21 0 334 280 60 60 chr9 30473124 30473374 -111798070 - L1MEc LINE L1 -4898 1221 972 1896 222 24 17 chr9 30473647 30474111 -111797333 - MLT1C LTR MaLR 0 467 1 29 60 0 0 chr9 30474908 30474958 -111796486 + AT_rich Low_complexity Low_complexity 1 50 0 302 221 47 23 chr9 30474989 30475075 -111796369 - L1MEc LINE L1 -5785 334 247 233 256 12 0 chr9 30475218 30475300 -111796144 + (TG)n Simple_repeat Simple_repeat 1 83 0 411 311 61 20 chr9 30475671 30475967 -111795477 - L1ME4a LINE L1 -237 5884 5577 2309 96 0 0 chr9 30476168 30476461 -111794983 - AluSx SINE Alu -11 301 9 31 58 0 0 chr9 30476467 30476519 -111794925 + AT_rich Low_complexity Low_complexity 1 52 0 306 323 30 37 chr9 30476829 30476993 -111794451 + MIR SINE MIR 79 241 -21 342 0 0 0 chr9 30478352 30478390 -111793054 + (ATG)n Simple_repeat Simple_repeat 2 39 0 2025 128 0 0 chr9 30478391 30478673 -111792771 - AluSx SINE Alu -30 282 1 199 271 57 14 chr9 30479585 30479655 -111791789 + MIR SINE MIR 182 254 -8 23 0 0 0 chr9 30479669 30479692 -111791752 + AT_rich Low_complexity Low_complexity 1 23 0 2153 158 30 32 chr9 30480259 30480697 -111790747 - L1PA15 LINE L1 -5 6160 5724 24 32 0 0 chr9 30481909 30481940 -111789504 + AT_rich Low_complexity Low_complexity 1 31 0 36 40 0 0 chr9 30481952 30482002 -111789442 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr9 30482275 30482297 -111789147 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr9 30482954 30482991 -111788453 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr9 30483558 30483579 -111787865 + AT_rich Low_complexity Low_complexity 1 21 0 312 333 17 64 chr9 30484206 30484290 -111787154 + L3 LINE CR1 1092 1178 -399 1957 154 7 0 chr9 30484290 30484595 -111786849 - AluSx SINE Alu -3 309 3 312 333 17 64 chr9 30484595 30484744 -111786700 + L3 LINE CR1 1178 1314 -263 25 31 0 0 chr9 30485111 30485143 -111786301 + AT_rich Low_complexity Low_complexity 1 32 0 278 312 115 6 chr9 30485269 30485426 -111786018 + MIR SINE MIR 13 186 -76 2377 77 3 0 chr9 30485867 30486167 -111785277 + AluSq SINE Alu 1 301 -12 212 281 220 83 chr9 30486968 30487020 -111784424 - L2 LINE L2 0 3313 3270 345 109 0 0 chr9 30487020 30487075 -111784369 + (TA)n Simple_repeat Simple_repeat 1 55 0 212 281 220 83 chr9 30487075 30487335 -111784109 - L2 LINE L2 -43 3270 2958 1981 134 0 7 chr9 30488582 30488887 -111782557 + AluSx SINE Alu 1 303 -9 678 293 40 0 chr9 30489271 30489445 -111781999 - MIR SINE MIR -9 253 73 825 281 96 65 chr9 30490559 30491050 -111780394 - MLT1H LTR MaLR -32 517 12 21 0 0 0 chr9 30491521 30491542 -111779902 + AT_rich Low_complexity Low_complexity 1 21 0 210 244 17 61 chr9 30491653 30491768 -111779676 + T-rich Low_complexity Low_complexity 1 110 0 251 287 67 70 chr9 30492031 30492304 -111779140 - L1M4c LINE L1 -4608 1955 1682 1741 177 30 7 chr9 30492304 30492609 -111778835 + AluJo SINE Alu 1 312 0 251 287 67 70 chr9 30492609 30492878 -111778566 - L1M4c LINE L1 -4881 1682 1265 808 222 87 14 chr9 30492985 30493260 -111778184 - L1MC4 LINE L1 -13 8029 7735 266 153 119 17 chr9 30493264 30493323 -111778121 - MLT1F LTR MaLR 0 542 441 4531 249 27 9 chr9 30493348 30494735 -111776709 + L1M4 LINE L1 2170 3581 -2565 558 208 27 7 chr9 30494738 30494887 -111776557 + L1MB3 LINE L1 6032 6183 0 1104 256 193 12 chr9 30494904 30495334 -111776110 - MLT1F1 LTR MaLR -52 515 8 1301 217 122 60 chr9 30495339 30495822 -111775622 - L1MC4 LINE L1 -306 7736 7224 2424 124 8 21 chr9 30496128 30496508 -111774936 - THE1C LTR MaLR 0 375 1 1729 120 4 4 chr9 30496508 30496766 -111774678 - THE1C-int LTR MaLR 0 1580 1323 922 159 16 23 chr9 30496766 30496994 -111774450 - THE1C LTR MaLR -71 293 1 315 335 27 8 chr9 30497159 30497348 -111774096 - MIR SINE MIR -17 245 9 293 345 176 7 chr9 30497428 30497570 -111773874 - MIR3 SINE MIR -12 196 31 375 261 73 111 chr9 30498578 30498919 -111772525 + MLT1I LTR MaLR 46 373 -36 2101 99 27 3 chr9 30500852 30501144 -111770300 - AluY SINE Alu -12 299 1 22 0 0 0 chr9 30502263 30502285 -111769159 + AT_rich Low_complexity Low_complexity 1 22 0 340 302 201 0 chr9 30502546 30502705 -111768739 + MIR SINE MIR 8 198 -64 204 211 0 0 chr9 30502748 30502786 -111768658 + (CTA)n Simple_repeat Simple_repeat 1 38 0 240 111 0 0 chr9 30504141 30504177 -111767267 + (A)n Simple_repeat Simple_repeat 1 36 0 425 352 28 20 chr9 30505930 30506180 -111765264 - MIR SINE MIR -2 260 9 22 0 0 0 chr9 30507186 30507208 -111764236 + AT_rich Low_complexity Low_complexity 1 22 0 6041 152 26 18 chr9 30507224 30509092 -111762352 - L1MA2 LINE L1 -12 6292 4408 25 31 0 0 chr9 30509930 30509962 -111761482 + AT_rich Low_complexity Low_complexity 1 32 0 213 39 0 0 chr9 30509963 30509989 -111761455 + (CA)n Simple_repeat Simple_repeat 1 26 0 2411 55 0 10 chr9 30510717 30511009 -111760435 + AluY SINE Alu 1 289 -22 35204 49 2 1 chr9 30511010 30516240 -111755204 + L1PA5 LINE L1 934 6165 0 23 54 0 0 chr9 30516407 30516444 -111755000 + AT_rich Low_complexity Low_complexity 1 37 0 468 257 139 46 chr9 30516826 30517063 -111754381 - MLT1K LTR MaLR -10 578 320 2217 125 3 0 chr9 30517267 30517579 -111753865 + AluSq SINE Alu 1 313 0 234 296 51 41 chr9 30518186 30518284 -111753160 - L2 LINE L2 0 3313 3215 2511 119 19 41 chr9 30518747 30519139 -111752305 + MLT2A1 LTR ERVL 1 385 -59 288 0 0 0 chr9 30519139 30519171 -111752273 + (TC)n Simple_repeat Simple_repeat 2 33 0 2511 119 19 41 chr9 30519171 30519191 -111752253 + MLT2A1 LTR ERVL 385 404 -40 594 143 28 12 chr9 30519202 30519532 -111751912 + (TA)n Simple_repeat Simple_repeat 1 335 0 264 53 0 26 chr9 30519545 30519583 -111751861 + MLT2A1 LTR ERVL 408 444 0 274 291 152 89 chr9 30519879 30520181 -111751263 + L2 LINE L2 2952 3272 0 278 344 27 38 chr9 30520190 30520376 -111751068 + MER117 DNA MER1_type 10 193 -4 1495 70 25 0 chr9 30520488 30520689 -111750755 + L1PA5 LINE L1 4829 5034 -1112 1486 62 5 0 chr9 30520689 30520934 -111750510 + L1PA5 LINE L1 5944 6193 0 482 243 15 15 chr9 30520971 30521107 -111750337 - L1MD2 LINE L1 -13 6346 6211 995 26 0 0 chr9 30521832 30521949 -111749495 - L1PA2 LINE L1 -2 6153 6037 1868 26 4 0 chr9 30521949 30522175 -111749269 + L1PA2 LINE L1 5821 6047 -108 249 311 56 0 chr9 30522956 30523046 -111748398 + MIR SINE MIR 156 250 -12 22 0 0 0 chr9 30524113 30524135 -111747309 + AT_rich Low_complexity Low_complexity 1 22 0 519 326 120 13 chr9 30524362 30524678 -111746766 + L1ME LINE L1 61 410 -5986 554 282 91 18 chr9 30525024 30525364 -111746080 + L1ME LINE L1 810 1174 -5222 1207 246 153 13 chr9 30525396 30526035 -111745409 + L1ME LINE L1 4901 5681 -552 221 0 35 0 chr9 30526035 30526064 -111745380 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1207 246 153 13 chr9 30526064 30526154 -111745290 + L1ME LINE L1 5681 5757 -476 21 36 0 0 chr9 30526158 30526186 -111745258 + AT_rich Low_complexity Low_complexity 1 28 0 497 230 54 0 chr9 30526189 30526400 -111745044 + L1ME2 LINE L1 2315 5888 -347 23 33 0 0 chr9 30526428 30526458 -111744986 + AT_rich Low_complexity Low_complexity 1 30 0 4486 190 12 10 chr9 30526478 30527298 -111744146 + L1MA2 LINE L1 14 835 -6730 * 9157 146 23 24 chr9 30527296 30530031 -111741413 + L1MA2 LINE L1 4989 7723 0 346 151 35 81 chr9 30530067 30530153 -111741291 + Tigger1 DNA MER2_type 70 151 -2267 * 1198 136 41 18 chr9 30530150 30530371 -111741073 + Tigger1 DNA MER2_type 2192 2417 -1 385 194 102 174 chr9 30530442 30530735 -111740709 + L1ME2 LINE L1 5906 6177 -58 2223 97 0 0 chr9 30531061 30531372 -111740072 - L1PA13 LINE L1 -4 6159 5849 266 287 20 10 chr9 30533046 30533147 -111738297 - MIR SINE MIR -12 250 149 266 220 0 0 chr9 30533184 30533234 -111738210 - L2 LINE L2 0 3272 3223 753 325 114 20 chr9 30533388 30533896 -111737548 - L2 LINE L2 -435 2879 2324 2368 43 0 0 chr9 30534462 30534766 -111736678 + AluY SINE Alu 3 306 0 971 226 83 43 chr9 30535883 30536225 -111735219 - L1ME3A LINE L1 -5 6165 5811 22 35 0 0 chr9 30536486 30536515 -111734929 + AT_rich Low_complexity Low_complexity 1 29 0 434 267 35 0 chr9 30536532 30536648 -111734796 - L2 LINE L2 -3 3310 3191 408 266 143 19 chr9 30537992 30538146 -111733298 + MER58 DNA MER1_type 1 173 -2247 211 250 0 19 chr9 30538581 30538689 -111732755 + (TA)n Simple_repeat Simple_repeat 2 107 0 1867 141 35 40 chr9 30538825 30539202 -111732242 - THE1C LTR MaLR 0 375 1 2474 157 71 7 chr9 30539208 30539642 -111731802 - THE1C-int LTR MaLR -5 1575 1114 314 190 0 0 chr9 30539639 30539697 -111731747 + L1MA9 LINE L1 5722 5779 -512 * 1249 239 17 3 chr9 30539697 30539986 -111731458 + AluJo SINE Alu 5 297 -15 378 62 0 0 chr9 30539988 30540036 -111731408 + AluY SINE Alu 3 50 -250 1500 78 0 0 chr9 30540036 30540271 -111731173 + AluY SINE Alu 102 311 0 2407 166 33 55 chr9 30540301 30540683 -111730761 + L1MA9 LINE L1 5783 6151 -161 198 0 0 0 chr9 30540683 30540705 -111730739 + (CA)n Simple_repeat Simple_repeat 1 22 0 2407 166 33 55 chr9 30540705 30540864 -111730580 + L1MA9 LINE L1 6151 6312 0 1098 232 27 59 chr9 30541296 30541671 -111729773 - MLT1A1 LTR MaLR 0 365 3 502 335 116 61 chr9 30541968 30542673 -111728771 - L1MC4a LINE L1 -161 6009 5266 21 57 0 0 chr9 30542864 30542899 -111728545 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr9 30543739 30543774 -111727670 + AT_rich Low_complexity Low_complexity 1 35 0 296 282 56 80 chr9 30544231 30544444 -111727000 + MLT1K LTR MaLR 166 373 -215 493 293 145 4 chr9 30544675 30544924 -111726520 - Charlie7 DNA MER1_type -2292 320 37 905 213 33 9 chr9 30546124 30546335 -111725109 - MER58A DNA MER1_type -8 216 1 821 210 93 40 chr9 30546699 30546999 -111724445 - MER33 DNA MER1_type -7 317 2 284 274 301 27 chr9 30546999 30547185 -111724259 + MIR SINE MIR 8 244 -18 322 247 24 12 chr9 30548668 30548753 -111722691 - L2 LINE L2 0 3313 3228 207 0 0 0 chr9 30549727 30549750 -111721694 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 725 245 101 32 chr9 30549797 30550075 -111721369 + LTR16A1 LTR ERVL 159 455 -2 26 0 0 0 chr9 30551418 30551444 -111720000 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 30552222 30552243 -111719201 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 30552497 30552520 -111718924 + AT_rich Low_complexity Low_complexity 1 23 0 204 122 0 0 chr9 30553595 30553636 -111717808 + (T)n Simple_repeat Simple_repeat 1 41 0 1990 136 0 0 chr9 30553990 30554276 -111717168 + AluSx SINE Alu 1 286 -26 336 94 0 0 chr9 30554276 30554329 -111717115 + (CATA)n Simple_repeat Simple_repeat 2 54 0 204 364 23 11 chr9 30558291 30558379 -111713065 + MIR SINE MIR 13 101 -161 249 211 19 149 chr9 30558684 30558845 -111712599 + MIR SINE MIR 122 261 -1 744 327 75 42 chr9 30559297 30559749 -111711695 + MLT1K LTR MaLR 101 567 -21 257 287 96 11 chr9 30559823 30559917 -111711527 + MIR SINE MIR 107 208 -54 26 0 0 0 chr9 30560725 30560751 -111710693 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr9 30560974 30560994 -111710450 + (CA)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr9 30560995 30561037 -111710407 + AT_rich Low_complexity Low_complexity 1 42 0 29 60 0 0 chr9 30561186 30561236 -111710208 + AT_rich Low_complexity Low_complexity 1 50 0 210 37 0 0 chr9 30561667 30561694 -111709750 + (TGG)n Simple_repeat Simple_repeat 1 27 0 682 294 132 0 chr9 30562059 30562287 -111709157 - MIR SINE MIR -4 258 1 186 406 24 32 chr9 30562409 30562532 -111708912 + L2 LINE L2 3149 3270 -2 574 336 69 42 chr9 30562973 30563453 -111707991 + L2 LINE L2 2537 3051 -221 707 305 47 8 chr9 30563518 30563754 -111707690 + MIR SINE MIR 6 250 -12 189 357 25 57 chr9 30563780 30563937 -111707507 + L2 LINE L2 3158 3309 -4 27 0 0 0 chr9 30563972 30563999 -111707445 + AT_rich Low_complexity Low_complexity 1 27 0 469 213 0 19 chr9 30564565 30564673 -111706771 - L1MA10 LINE L1 -7 6327 6222 29 0 0 0 chr9 30564705 30564734 -111706710 + AT_rich Low_complexity Low_complexity 1 29 0 4833 174 36 40 chr9 30564855 30566199 -111705245 - L1MA8 LINE L1 -6 6285 4937 223 295 162 48 chr9 30566996 30567101 -111704343 - MIR SINE MIR -71 137 21 228 147 0 0 chr9 30568873 30568907 -111702537 + L2 LINE L2 3264 3297 -16 2557 48 0 6 chr9 30569219 30569532 -111701912 - AluY SINE Alu 0 311 1 1705 125 9 92 chr9 30569532 30569860 -111701584 - AluSx SINE Alu -9 303 3 2940 126 7 2 chr9 30569864 30570318 -111701126 - L1PA15 LINE L1 0 6165 5710 270 0 0 0 chr9 30571021 30571051 -111700393 + (TG)n Simple_repeat Simple_repeat 1 30 0 794 261 51 114 chr9 30573980 30574409 -111697035 + MLT1E1 LTR MaLR 20 421 -172 6237 86 5 20 chr9 30574409 30575297 -111696147 + L1PA11 LINE L1 5301 6174 0 845 213 6 6 chr9 30575321 30575485 -111695959 + MLT1E1 LTR MaLR 491 654 0 22 0 0 0 chr9 30576748 30576770 -111694674 + AT_rich Low_complexity Low_complexity 1 22 0 214 353 98 21 chr9 30576845 30577080 -111694364 - MIR SINE MIR 0 262 10 2088 136 3 0 chr9 30577236 30577546 -111693898 + AluSq SINE Alu 1 311 -2 25 65 0 0 chr9 30577989 30578035 -111693409 + AT_rich Low_complexity Low_complexity 1 46 0 21 89 0 0 chr9 30579271 30579327 -111692117 + AT_rich Low_complexity Low_complexity 1 56 0 833 234 10 30 chr9 30579589 30579786 -111691658 - MIR SINE MIR -55 207 15 258 32 0 0 chr9 30580092 30580123 -111691321 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 484 274 62 111 chr9 30580358 30580727 -111690717 + L1ME LINE L1 5460 5671 -450 1355 169 20 102 chr9 30583668 30583815 -111687629 - L1MC1 LINE L1 0 6613 6456 1499 214 0 0 chr9 30583815 30584118 -111687326 + AluJo SINE Alu 13 315 0 1355 169 20 102 chr9 30584118 30584323 -111687121 - L1MC1 LINE L1 -157 6456 6289 4276 71 34 8 chr9 30584323 30585324 -111686120 + MER11A LTR ERVK 1 1266 0 8294 213 63 23 chr9 30585324 30590011 -111681433 - L1MC1 LINE L1 -320 6293 812 1402 177 8 8 chr9 30590013 30590261 -111681183 - AluJb SINE Alu -64 248 1 3923 192 30 26 chr9 30590262 30591059 -111680385 - L1MC1 LINE L1 -5599 827 28 197 295 77 0 chr9 30592162 30592240 -111679204 + L2 LINE L2 3229 3312 -1 445 49 62 0 chr9 30593806 30593887 -111677557 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 27 49 0 0 chr9 30594767 30594808 -111676636 + AT_rich Low_complexity Low_complexity 1 41 0 1884 211 11 0 chr9 30595087 30595448 -111675996 + MLT1A1 LTR MaLR 1 365 0 218 350 17 43 chr9 30595657 30595774 -111675670 + L2 LINE L2 2956 3069 -244 424 332 79 5 chr9 30596297 30596499 -111674945 + MIR SINE MIR 30 246 -16 277 342 97 0 chr9 30596730 30596885 -111674559 + MIR SINE MIR 74 243 -19 642 305 70 9 chr9 30597501 30597714 -111673730 + MIR SINE MIR 10 235 -27 2088 115 10 0 chr9 30597920 30598208 -111673236 - AluSg SINE Alu -19 291 1 621 271 42 10 chr9 30598388 30598580 -111672864 + MLT1J1 LTR MaLR 1 198 -248 2020 118 0 3 chr9 30598920 30599207 -111672237 + AluSq SINE Alu 1 286 -27 321 232 0 0 chr9 30599213 30599282 -111672162 - L1MC4 LINE L1 -1339 6703 6635 514 246 57 23 chr9 30599553 30599728 -111671716 + MLT1J1 LTR MaLR 255 435 -11 290 340 207 24 chr9 30603972 30605032 -111666412 + L2 LINE L2 1285 2538 -776 6196 66 19 1 chr9 30606054 30606876 -111664568 + L1PA8 LINE L1 5335 6171 -1 371 299 121 0 chr9 30607988 30608145 -111663299 + MER5B DNA MER1_type 3 178 0 486 281 166 0 chr9 30608159 30608298 -111663146 - MER5A DNA MER1_type 0 189 28 279 204 20 0 chr9 30609182 30609231 -111662213 + MIR3 SINE MIR 114 163 -45 * 284 292 77 42 chr9 30609228 30609396 -111662048 - MIR SINE MIR 0 262 89 27 62 0 0 chr9 30610337 30610385 -111661059 + AT_rich Low_complexity Low_complexity 1 48 0 494 282 60 44 chr9 30611090 30611338 -111660106 + Tigger8 DNA MER2_type 60 311 -355 355 329 7 0 chr9 30611462 30611599 -111659845 + Tigger8 DNA MER2_type 390 527 -139 2268 93 0 10 chr9 30612329 30612630 -111658814 - AluY SINE Alu -13 298 1 1587 278 151 44 chr9 30614046 30615343 -111656101 + HAL1 LINE L1 446 1881 -626 3358 186 105 102 chr9 30615409 30616037 -111655407 + L1MD2 LINE L1 5074 5699 -660 2196 102 7 0 chr9 30616037 30616331 -111655113 - AluSp SINE Alu -17 296 1 3358 186 105 102 chr9 30616331 30616951 -111654493 + L1MD2 LINE L1 5699 6330 -29 278 354 38 19 chr9 30617097 30617306 -111654138 + L1MEd LINE L1 335 547 -5572 592 282 5 61 chr9 30618904 30619011 -111652433 - MIR SINE MIR -9 253 162 2207 179 94 39 chr9 30619011 30619531 -111651913 - MER44D DNA MER2_type -1 604 1 592 282 5 61 chr9 30619531 30619636 -111651808 - MIR SINE MIR -100 162 53 905 265 88 21 chr9 30619686 30620100 -111651344 - L1ME2 LINE L1 -10 6154 5714 23 0 0 0 chr9 30620349 30620372 -111651072 + AT_rich Low_complexity Low_complexity 1 23 0 211 341 174 12 chr9 30621379 30621546 -111649898 + MIR SINE MIR 8 201 -61 2103 95 7 3 chr9 30621551 30621836 -111649608 + AluSq SINE Alu 1 286 -27 336 64 0 0 chr9 30621836 30621883 -111649561 + (CATA)n Simple_repeat Simple_repeat 2 48 0 405 301 62 94 chr9 30622050 30622488 -111648956 + MLT1H LTR MaLR 104 527 -22 502 252 43 29 chr9 30622529 30622668 -111648776 - MIR SINE MIR -110 152 12 180 125 0 0 chr9 30622861 30622893 -111648551 + (CA)n Simple_repeat Simple_repeat 2 33 0 205 195 24 0 chr9 30623321 30623362 -111648082 + CT-rich Low_complexity Low_complexity 1 42 0 448 289 51 67 chr9 30623629 30624003 -111647441 + L1M4 LINE L1 3673 4040 -2106 593 260 71 10 chr9 30624709 30624905 -111646539 - L1M4 LINE L1 -1261 5845 5638 261 119 0 0 chr9 30624955 30624997 -111646447 + (TA)n Simple_repeat Simple_repeat 2 43 0 1122 251 42 40 chr9 30625038 30625488 -111645956 - L1MEc LINE L1 -3245 3861 3411 275 235 8 34 chr9 30625542 30625661 -111645783 - L1MEc LINE L1 -4129 3158 3043 904 188 108 0 chr9 30625731 30625954 -111645490 - L1MA8 LINE L1 -22 6269 6023 * 3162 257 112 55 chr9 30625953 30627476 -111643968 - L1M4 LINE L1 -5418 1612 2 333 326 109 29 chr9 30627491 30627767 -111643677 - L1MEc LINE L1 -4304 2983 2686 1904 263 30 87 chr9 30627874 30628236 -111643208 - L1M4c LINE L1 -4438 2849 2468 2703 52 9 0 chr9 30628236 30628579 -111642865 - L1PA7 LINE L1 -5 6149 5804 1904 263 30 87 chr9 30628579 30629643 -111641801 - L1M4c LINE L1 -4819 2468 1339 243 0 0 0 chr9 30629655 30629682 -111641762 + (TG)n Simple_repeat Simple_repeat 2 28 0 2093 114 0 3 chr9 30629683 30629973 -111641471 - AluSc SINE Alu -14 295 7 535 246 64 37 chr9 30630442 30630629 -111640815 - L1M4c LINE L1 -6613 395 204 418 333 41 7 chr9 30630736 30630883 -111640561 - MIR SINE MIR -106 156 5 182 316 0 0 chr9 30630908 30630946 -111640498 + L3b LINE CR1 1522 1559 -24 22 0 0 0 chr9 30631208 30631230 -111640214 + AT_rich Low_complexity Low_complexity 1 22 0 420 321 10 72 chr9 30631593 30631786 -111639658 + MIR SINE MIR 57 237 -25 580 332 30 30 chr9 30631826 30632007 -111639437 + MIR SINE MIR 28 211 -51 3888 153 94 12 chr9 30632007 30632770 -111638674 + LTR1B LTR ERV1 1 826 0 580 332 30 30 chr9 30632770 30632823 -111638621 + MIR SINE MIR 210 262 0 25 75 0 0 chr9 30634642 30634695 -111636749 + AT_rich Low_complexity Low_complexity 1 53 0 215 308 46 0 chr9 30635094 30635159 -111636285 - MIR3 SINE MIR -22 186 119 408 261 76 57 chr9 30635701 30635858 -111635586 + MIR SINE MIR 73 232 -30 284 337 0 0 chr9 30635863 30635946 -111635498 + LTR40c LTR ERVL 4 86 -379 1602 162 6 79 chr9 30636032 30636360 -111635084 + AluJo SINE Alu 1 304 -8 448 238 36 81 chr9 30636461 30636709 -111634735 - L1M4 LINE L1 -1550 4596 4360 203 276 0 0 chr9 30636722 30636780 -111634664 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 505 274 26 34 chr9 30636802 30637054 -111634390 + LTR40b LTR ERVL 187 451 -14 301 342 9 0 chr9 30637865 30637979 -111633465 + MIR SINE MIR 40 154 -108 297 261 183 59 chr9 30638793 30638946 -111632498 + MIR SINE MIR 79 250 -12 25 0 0 0 chr9 30639025 30639050 -111632394 + AT_rich Low_complexity Low_complexity 1 25 0 444 19 0 0 chr9 30639056 30639109 -111632335 + (CA)n Simple_repeat Simple_repeat 2 54 0 291 336 70 56 chr9 30639211 30639425 -111632019 - MIR SINE MIR -26 236 20 210 248 121 78 chr9 30639460 30639601 -111631843 - MER5A DNA MER1_type 0 189 43 * 237 323 85 62 chr9 30639504 30639634 -111631810 + MER5A DNA MER1_type 54 186 -3 2140 115 0 3 chr9 30639694 30639989 -111631455 - AluY SINE Alu -17 294 1 22 35 0 0 chr9 30640056 30640085 -111631359 + AT_rich Low_complexity Low_complexity 1 29 0 466 260 61 18 chr9 30640341 30640506 -111630938 + MIR SINE MIR 16 191 -64 2456 140 10 22 chr9 30641200 30641607 -111629837 + THE1C-int LTR MaLR 1179 1580 0 1579 171 26 60 chr9 30641607 30641959 -111629485 + THE1C LTR MaLR 1 340 -35 200 268 134 31 chr9 30642486 30642583 -111628861 + MIR SINE MIR 36 142 -120 2418 78 0 0 chr9 30644461 30644769 -111626675 + AluY SINE Alu 1 308 -3 23 0 0 0 chr9 30645108 30645131 -111626313 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 30645261 30645291 -111626153 + AT_rich Low_complexity Low_complexity 1 30 0 2206 138 8 8 chr9 30645568 30645937 -111625507 - L1PB1 LINE L1 -1 6150 5782 294 206 0 0 chr9 30645937 30646000 -111625444 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 291 105 0 0 chr9 30646000 30646038 -111625406 + (CA)n Simple_repeat Simple_repeat 2 39 0 26 30 0 0 chr9 30646077 30646110 -111625334 + GC_rich Low_complexity Low_complexity 1 33 0 1052 88 0 11 chr9 30646152 30646333 -111625111 + (C)n Simple_repeat Simple_repeat 1 179 0 206 216 14 0 chr9 30646471 30646545 -111624899 + C-rich Low_complexity Low_complexity 2 76 0 186 43 0 0 chr9 30646581 30646604 -111624840 + (CA)n Simple_repeat Simple_repeat 1 23 0 1208 81 0 0 chr9 30646613 30646774 -111624670 - L1PB1 LINE L1 -370 5781 5621 222 37 0 0 chr9 30647115 30647142 -111624302 + (CA)n Simple_repeat Simple_repeat 1 27 0 1954 125 15 15 chr9 30647389 30647718 -111623726 + MER67C LTR ERV1 382 710 0 245 180 0 33 chr9 30647945 30647968 -111623476 + GA-rich Low_complexity Low_complexity 3 25 -36 2052 253 28 8 chr9 30647968 30648498 -111622946 + MER87 LTR ERV1 1 541 0 245 180 0 33 chr9 30648498 30648535 -111622909 + GA-rich Low_complexity Low_complexity 25 61 0 10157 220 44 11 chr9 30648785 30651012 -111620432 + L1MA9 LINE L1 2587 4740 -1572 2088 171 47 33 chr9 30651012 30651463 -111619981 + MSTB2 LTR MaLR 1 457 0 10157 220 44 11 chr9 30651463 30651529 -111619915 + L1MA9 LINE L1 4740 4802 -1510 180 0 0 0 chr9 30651529 30651549 -111619895 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 10157 220 44 11 chr9 30651549 30652391 -111619053 + L1MA9 LINE L1 4802 5831 -481 615 117 0 0 chr9 30652396 30652490 -111618954 + (GA)n Simple_repeat Simple_repeat 1 94 0 1716 192 32 49 chr9 30652490 30652996 -111618448 + L1MA9 LINE L1 5814 6275 -37 2525 53 0 3 chr9 30653136 30653440 -111618004 + AluY SINE Alu 1 303 -8 1644 241 29 77 chr9 30653444 30654245 -111617199 - L1MC5 LINE L1 -435 7526 6628 369 0 0 0 chr9 30654246 30654287 -111617157 + (CA)n Simple_repeat Simple_repeat 2 42 0 513 0 0 0 chr9 30655095 30655152 -111616292 + (TA)n Simple_repeat Simple_repeat 2 58 0 360 291 101 39 chr9 30655168 30655426 -111616018 - HAL1b LINE L1 -966 382 109 495 0 0 0 chr9 30657085 30657140 -111614304 + (TG)n Simple_repeat Simple_repeat 1 55 0 445 366 51 9 chr9 30657148 30657395 -111614049 + MIR SINE MIR 6 260 -2 366 305 96 23 chr9 30657530 30657707 -111613737 + L2 LINE L2 3124 3313 0 2371 81 0 0 chr9 30658716 30659014 -111612430 + AluY SINE Alu 1 298 -13 195 42 0 0 chr9 30659109 30659133 -111612311 + (ATG)n Simple_repeat Simple_repeat 2 25 0 378 0 0 0 chr9 30659674 30659716 -111611728 + (CA)n Simple_repeat Simple_repeat 2 43 0 220 246 0 18 chr9 30660077 30660134 -111611310 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 342 358 18 0 chr9 30662245 30662354 -111609090 - L2 LINE L2 -8 3264 3154 1582 150 194 6 chr9 30662505 30662865 -111608579 + MSTA LTR MaLR 1 428 0 184 345 58 46 chr9 30665835 30665922 -111605522 + L3 LINE CR1 1016 1103 -474 387 0 0 0 chr9 30666463 30666506 -111604938 + (TG)n Simple_repeat Simple_repeat 2 44 0 420 307 22 39 chr9 30666667 30666846 -111604598 - MIR3 SINE MIR -5 203 28 200 327 50 50 chr9 30666846 30667005 -111604439 + L3 LINE CR1 1411 1569 -8 21 0 0 0 chr9 30667738 30667759 -111603685 + AT_rich Low_complexity Low_complexity 1 21 0 330 266 0 13 chr9 30667984 30668063 -111603381 - L2 LINE L2 -1 3271 3194 1665 166 43 15 chr9 30668412 30668738 -111602706 - MER7A DNA MER2_type 0 346 14 984 246 87 16 chr9 30668836 30669157 -111602287 + MER2 DNA MER2_type 1 344 0 287 376 8 8 chr9 30669241 30669366 -111602078 - L2 LINE L2 -213 3059 2935 1510 217 33 28 chr9 30669371 30669731 -111601713 - MLT1A1 LTR MaLR 0 365 4 21 36 0 0 chr9 30669739 30669767 -111601677 + AT_rich Low_complexity Low_complexity 1 28 0 476 327 44 24 chr9 30669983 30670234 -111601210 + MIR SINE MIR 7 262 0 2317 78 14 0 chr9 30670304 30670597 -111600847 + AluSc SINE Alu 1 297 -12 473 290 181 19 chr9 30670987 30671246 -111600198 + L2 LINE L2 2988 3288 -25 345 82 0 0 chr9 30671301 30671350 -111600094 + (CA)n Simple_repeat Simple_repeat 1 49 0 188 313 43 96 chr9 30671984 30672099 -111599345 + L2 LINE L2 3148 3256 -16 2198 130 8 31 chr9 30674140 30674524 -111596920 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr9 30674655 30674676 -111596768 + AT_rich Low_complexity Low_complexity 1 21 0 2959 169 138 36 chr9 30675606 30675949 -111595495 + MER44D DNA MER2_type 1 308 -2279 2502 60 0 19 chr9 30675949 30676266 -111595178 - AluY SINE Alu 0 311 1 2959 169 138 36 chr9 30676266 30676560 -111594884 + MER44D DNA MER2_type 308 703 -2 27 0 0 0 chr9 30676717 30676744 -111594700 + AT_rich Low_complexity Low_complexity 1 27 0 230 161 0 18 chr9 30677660 30677716 -111593728 + (TA)n Simple_repeat Simple_repeat 1 55 0 428 278 192 0 chr9 30679368 30679519 -111591925 + MER5A DNA MER1_type 10 189 0 2261 58 0 4 chr9 30679658 30679963 -111591481 + AluSc SINE Alu 3 306 0 2001 127 0 13 chr9 30680450 30680766 -111590678 - AluSx SINE Alu 0 312 1 286 250 135 19 chr9 30680801 30680905 -111590539 + L2 LINE L2 3183 3298 -15 285 185 25 12 chr9 30681175 30681256 -111590188 + (TA)n Simple_repeat Simple_repeat 1 82 0 315 0 0 0 chr9 30681616 30681651 -111589793 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 152 0 0 chr9 30682562 30682595 -111588849 + (TG)n Simple_repeat Simple_repeat 2 34 0 208 352 105 0 chr9 30682801 30682906 -111588538 - L2 LINE L2 -2 3311 3196 388 129 0 24 chr9 30682907 30682992 -111588452 + (TA)n Simple_repeat Simple_repeat 2 84 0 339 25 0 0 chr9 30682992 30683032 -111588412 + (GA)n Simple_repeat Simple_repeat 2 41 0 5300 308 110 12 chr9 30683157 30685297 -111586147 - L2 LINE L2 -834 2480 131 273 333 78 16 chr9 30685303 30685432 -111586012 + MIR SINE MIR 125 261 -1 24 67 0 0 chr9 30687498 30687543 -111583901 + AT_rich Low_complexity Low_complexity 1 45 0 22 80 0 0 chr9 30687682 30687732 -111583712 + AT_rich Low_complexity Low_complexity 1 50 0 219 394 96 0 chr9 30687777 30687871 -111583573 + L2 LINE L2 3191 3293 -20 308 258 156 27 chr9 30688835 30688935 -111582509 - MER112 DNA MER1_type -50 210 124 240 59 0 0 chr9 30688935 30688969 -111582475 + (TG)n Simple_repeat Simple_repeat 2 35 0 308 258 156 27 chr9 30688969 30689054 -111582390 - MER112 DNA MER1_type -136 124 1 37 23 0 0 chr9 30689113 30689157 -111582287 + AT_rich Low_complexity Low_complexity 1 44 0 347 0 23 0 chr9 30690166 30690209 -111581235 + (CAAAAA)n Simple_repeat Simple_repeat 1 44 0 2216 85 3 3 chr9 30692628 30692956 -111578488 - AluY SINE Alu 0 328 1 205 392 200 0 chr9 30693422 30693552 -111577892 + L2 LINE L2 3116 3271 -1 24 67 0 0 chr9 30694396 30694441 -111577003 + AT_rich Low_complexity Low_complexity 1 45 0 271 304 70 17 chr9 30694972 30695087 -111576357 + L2 LINE L2 2585 2705 -609 2362 83 0 7 chr9 30695096 30695397 -111576047 + AluSg SINE Alu 1 299 -11 221 389 38 8 chr9 30695459 30695590 -111575854 + L2 LINE L2 2851 2985 -287 315 296 75 31 chr9 30696073 30696232 -111575212 + MER117 DNA MER1_type 1 166 -31 1259 323 143 42 chr9 30696371 30697607 -111573837 + L2 LINE L2 1947 3312 -1 28 0 0 0 chr9 30697843 30697871 -111573573 + AT_rich Low_complexity Low_complexity 1 28 0 31 68 0 0 chr9 30697963 30698022 -111573422 + AT_rich Low_complexity Low_complexity 1 59 0 1534 160 90 16 chr9 30698837 30699149 -111572295 - MER44D DNA MER2_type -4 605 1 488 319 160 31 chr9 30699177 30699622 -111571822 - L2 LINE L2 -1 3312 2811 2162 120 0 0 chr9 30699789 30700088 -111571356 + AluSc SINE Alu 1 299 -10 279 329 66 15 chr9 30700092 30700229 -111571215 + L2 LINE L2 2562 2705 -609 1414 69 0 11 chr9 30700238 30700413 -111571031 + AluSg SINE Alu 1 173 -137 222 333 40 33 chr9 30700936 30701086 -111570358 - L2 LINE L2 -1640 1674 1524 1852 189 43 36 chr9 30701510 30701901 -111569543 - MSTD LTR MaLR 0 396 3 532 288 52 86 chr9 30702904 30703324 -111568120 - MLT1K LTR MaLR 0 588 183 2125 137 0 3 chr9 30704012 30704318 -111567126 - AluSq SINE Alu -8 305 1 3274 94 0 5 chr9 30708036 30708482 -111562962 + MLT2A1 LTR ERVL 1 444 0 359 304 151 13 chr9 30708619 30708802 -111562642 - MIR SINE MIR -49 213 7 1096 237 118 28 chr9 30709023 30709385 -111562059 + MLT1G1 LTR MaLR 15 366 -201 234 399 0 8 chr9 30709645 30709778 -111561666 + MLT1G1 LTR MaLR 451 582 -13 456 308 77 11 chr9 30710154 30710336 -111561108 + MER117 DNA MER1_type 4 197 0 200 299 131 0 chr9 30710500 30710607 -111560837 + MIR SINE MIR 72 192 -70 272 271 369 9 chr9 30712801 30713015 -111558429 - L3 LINE CR1 -8 1569 1279 668 240 28 69 chr9 30713018 30713235 -111558209 + MIR SINE MIR 49 256 -6 325 301 89 60 chr9 30713250 30713532 -111557912 + L3 LINE CR1 691 980 -597 23 33 0 0 chr9 30713729 30713759 -111557685 + AT_rich Low_complexity Low_complexity 1 30 0 446 171 191 7 chr9 30713858 30714010 -111557434 - Charlie4 DNA MER1_type -7 1954 1775 * 643 201 93 26 chr9 30714009 30714203 -111557241 - Charlie4 DNA MER1_type -1669 292 86 1998 205 84 50 chr9 30714518 30715152 -111556292 + LTR1B LTR ERV1 1 655 -171 2122 123 3 7 chr9 30715238 30715540 -111555904 + AluSq SINE Alu 1 301 -12 274 378 30 20 chr9 30716024 30716225 -111555219 - L2 LINE L2 -513 2801 2599 189 195 0 0 chr9 30716390 30716431 -111555013 + (CA)n Simple_repeat Simple_repeat 2 42 0 221 341 24 0 chr9 30716431 30716516 -111554928 + (CATG)n Simple_repeat Simple_repeat 4 90 0 228 122 0 0 chr9 30716517 30716558 -111554886 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr9 30717521 30717542 -111553902 + AT_rich Low_complexity Low_complexity 1 21 0 338 308 29 19 chr9 30720518 30720622 -111550822 + L2 LINE L2 3168 3272 0 2237 101 0 3 chr9 30721961 30722248 -111549196 - AluSp SINE Alu -27 286 1 38 51 0 0 chr9 30722253 30722312 -111549132 + AT_rich Low_complexity Low_complexity 1 59 0 2254 92 0 3 chr9 30722996 30723279 -111548165 + AluSp SINE Alu 1 282 -31 267 31 0 0 chr9 30723282 30723314 -111548130 + (TA)n Simple_repeat Simple_repeat 2 33 0 1569 210 78 24 chr9 30723703 30724165 -111547279 + Charlie1b DNA MER1_type 37 523 0 360 231 10 39 chr9 30724170 30724274 -111547170 + L2 LINE L2 2390 2490 -824 7602 183 98 59 chr9 30724307 30725995 -111545449 - MER52A LTR ERV1 -2 1753 1 204 388 50 0 chr9 30726009 30726169 -111545275 + L2 LINE L2 2507 2674 -640 361 332 74 21 chr9 30726463 30726662 -111544782 + L2 LINE L2 2809 3014 -299 201 231 0 19 chr9 30726997 30727049 -111544395 + MIR SINE MIR 110 160 -102 747 283 33 50 chr9 30727060 30727360 -111544084 - L2 LINE L2 0 3313 3019 443 174 23 0 chr9 30727886 30727972 -111543472 - MIR SINE MIR -73 189 102 343 171 40 0 chr9 30728846 30728922 -111542522 + MER116 DNA Mariner 2 80 0 209 318 209 18 chr9 30729488 30729598 -111541846 + MIR SINE MIR 34 164 -98 2175 127 0 16 chr9 30729713 30730029 -111541415 + AluSx SINE Alu 2 312 0 213 94 0 0 chr9 30731638 30731670 -111539774 + (CA)n Simple_repeat Simple_repeat 2 33 0 602 314 52 44 chr9 30732402 30732746 -111538698 - MLT1I LTR MaLR 0 409 63 21 0 0 0 chr9 30733245 30733266 -111538178 + AT_rich Low_complexity Low_complexity 1 21 0 313 271 47 0 chr9 30733381 30733466 -111537978 + L1MC4 LINE L1 6614 6702 -1340 378 131 0 36 chr9 30733467 30733551 -111537893 + (TA)n Simple_repeat Simple_repeat 2 82 0 271 239 0 22 chr9 30733557 30733649 -111537795 + L1MC4 LINE L1 6614 6703 -1339 657 117 4 59 chr9 30733669 30733951 -111537493 + (TA)n Simple_repeat Simple_repeat 1 266 0 312 283 0 22 chr9 30733955 30734047 -111537397 + L1MC4 LINE L1 6614 6703 -1339 459 173 0 64 chr9 30734480 30734590 -111536854 + MLT1A1 LTR MaLR 3 105 -260 284 342 61 61 chr9 30735368 30735663 -111535781 + L2 LINE L2 2977 3271 -1 272 342 25 66 chr9 30736123 30736366 -111535078 + MLT1I LTR MaLR 101 333 -76 1554 216 107 50 chr9 30736757 30737234 -111534210 - MLT1D LTR MaLR 0 505 2 21 36 0 0 chr9 30737309 30737337 -111534107 + AT_rich Low_complexity Low_complexity 1 28 0 193 222 56 56 chr9 30738817 30738889 -111532555 + L3 LINE CR1 1486 1557 -20 1893 159 37 11 chr9 30739161 30739513 -111531931 - THE1C LTR MaLR -1 374 14 242 319 11 11 chr9 30739543 30739637 -111531807 + MIR SINE MIR 113 206 -56 817 211 26 21 chr9 30739659 30739849 -111531595 + MER20 DNA MER1_type 29 219 0 219 69 0 0 chr9 30741283 30741312 -111530132 + (CA)n Simple_repeat Simple_repeat 2 30 0 528 356 170 34 chr9 30741902 30742924 -111528520 - L2 LINE L2 -16 3256 2107 607 312 78 9 chr9 30742961 30743179 -111528265 - MIR SINE MIR -18 244 12 916 180 44 81 chr9 30743269 30743541 -111527903 + MER33 DNA MER1_type 1 262 -62 213 294 200 0 chr9 30744641 30744726 -111526718 + MIR SINE MIR 115 216 -46 26 30 0 0 chr9 30745369 30745402 -111526042 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 30745535 30745556 -111525888 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 30745685 30745719 -111525725 + AT_rich Low_complexity Low_complexity 1 34 0 1511 234 19 22 chr9 30745828 30746195 -111525249 + MLT2D LTR ERVL 1 366 -48 293 47 23 0 chr9 30746197 30746240 -111525204 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 210 169 13 26 chr9 30746256 30746333 -111525111 + (TA)n Simple_repeat Simple_repeat 1 76 0 370 99 87 5 chr9 30746577 30747002 -111524442 + (TA)n Simple_repeat Simple_repeat 1 459 0 321 26 0 0 chr9 30747210 30747248 -111524196 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 759 176 8 0 chr9 30747248 30747379 -111524065 + FRAM SINE Alu 1 129 -47 21 0 0 0 chr9 30748852 30748873 -111522571 + AT_rich Low_complexity Low_complexity 1 21 0 425 116 0 0 chr9 30749811 30749880 -111521564 + L1PA13 LINE L1 6088 6156 -7 30 0 0 0 chr9 30750398 30750428 -111521016 + AT_rich Low_complexity Low_complexity 1 30 0 349 341 103 66 chr9 30750451 30750771 -111520673 - L2 LINE L2 -12 3260 2929 2126 115 0 6 chr9 30751133 30751446 -111519998 + AluY SINE Alu 1 311 0 227 305 102 53 chr9 30753261 30753416 -111518028 - MIR SINE MIR -57 151 45 229 259 0 0 chr9 30754021 30754079 -111517365 + (TG)n Simple_repeat Simple_repeat 2 59 0 269 336 65 100 chr9 30754766 30755215 -111516229 - L2 LINE L2 -2 3270 2838 237 349 34 81 chr9 30756009 30756244 -111515200 + L2 LINE L2 2963 3186 -86 524 343 116 15 chr9 30756354 30756835 -111514609 + L1MC4a LINE L1 5296 5825 -1983 31 26 0 0 chr9 30756841 30756879 -111514565 + AT_rich Low_complexity Low_complexity 1 38 0 26 82 0 0 chr9 30757153 30757214 -111514230 + AT_rich Low_complexity Low_complexity 1 61 0 242 298 158 0 chr9 30757352 30757489 -111513955 + MIR SINE MIR 15 173 -89 1960 120 22 35 chr9 30758726 30759042 -111512402 + AluSx SINE Alu 1 312 0 25 0 0 0 chr9 30759503 30759528 -111511916 + AT_rich Low_complexity Low_complexity 1 25 0 413 278 26 147 chr9 30760032 30760305 -111511139 - MIR SINE MIR -3 259 20 309 272 64 32 chr9 30760792 30760917 -111510527 - L1MC4 LINE L1 0 8042 7914 918 215 129 68 chr9 30760970 30761411 -111510033 - L1MC4 LINE L1 -132 7910 7443 209 57 29 0 chr9 30761865 30761900 -111509544 + (TTA)n Simple_repeat Simple_repeat 3 38 0 8370 31 0 0 chr9 30761900 30763654 -111507790 - L1PA3 LINE L1 -18 6137 4384 9922 38 2 0 chr9 30763654 30764878 -111506566 + L1PA3 LINE L1 3172 4397 -1749 332 331 73 22 chr9 30765497 30765675 -111505769 + MIR3 SINE MIR 17 203 -5 2136 106 0 20 chr9 30765740 30765837 -111505607 - AluSx SINE Alu -11 301 204 3398 197 23 63 chr9 30765837 30766847 -111504597 + LTR5 LTR ERVK 1 969 0 2136 106 0 20 chr9 30766847 30767051 -111504393 - AluSx SINE Alu -108 204 6 1883 105 0 14 chr9 30767267 30767543 -111503901 - L1PA11 LINE L1 -4 6170 5899 306 266 0 38 chr9 30767942 30768021 -111503423 + MIR SINE MIR 5 80 -182 521 341 49 46 chr9 30768509 30768814 -111502630 + L2 LINE L2 2589 2894 -420 702 120 0 0 chr9 30768816 30768945 -111502499 - AluSg/x SINE Alu 0 311 183 263 328 52 95 chr9 30769011 30769237 -111502207 + L2 LINE L2 2926 3160 -153 407 92 15 0 chr9 30769237 30769302 -111502142 + (TA)n Simple_repeat Simple_repeat 2 67 0 2267 112 0 0 chr9 30769306 30769610 -111501834 - AluSx SINE Alu -8 304 1 263 328 52 95 chr9 30769610 30769778 -111501666 + L2 LINE L2 3163 3308 -5 361 188 15 23 chr9 30770300 30770433 -111501011 + (TA)n Simple_repeat Simple_repeat 2 133 0 306 221 11 42 chr9 30770471 30770566 -111500878 - L1MC4 LINE L1 -1339 6703 6612 417 11 100 0 chr9 30770566 30770656 -111500788 + (TA)n Simple_repeat Simple_repeat 1 99 0 309 281 0 35 chr9 30771009 30771154 -111500290 + L1MC4 LINE L1 6614 6703 -1339 230 313 50 12 chr9 30774754 30774834 -111496610 - L2 LINE L2 0 3313 3231 30 0 0 0 chr9 30775070 30775100 -111496344 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr9 30775828 30775862 -111495582 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 370 194 14 0 chr9 30776905 30776977 -111494467 + MIR SINE MIR 101 173 -89 300 262 104 53 chr9 30779122 30779376 -111492068 - L1ME LINE L1 -542 5579 5312 4335 39 0 0 chr9 30779383 30779902 -111491542 - L1PA3 LINE L1 0 6155 5637 22 0 0 0 chr9 30780291 30780313 -111491131 + AT_rich Low_complexity Low_complexity 1 22 0 1351 141 48 0 chr9 30780353 30780623 -111490821 - L1MA8 LINE L1 -1 6290 6008 416 370 110 28 chr9 30780769 30780874 -111490570 - L2 LINE L2 -678 2636 2541 2110 176 13 33 chr9 30780874 30781328 -111490116 + MER65A LTR ERV1 1 445 0 416 370 110 28 chr9 30781328 30781824 -111489620 - L2 LINE L2 -773 2541 1986 652 277 114 0 chr9 30783198 30783418 -111488026 + MIR SINE MIR 15 259 -3 307 350 84 31 chr9 30783497 30783723 -111487721 + L3 LINE CR1 1329 1566 -11 1177 153 18 9 chr9 30784351 30784573 -111486871 + L1PA13 LINE L1 5939 6162 -1 5997 239 102 32 chr9 30784615 30787539 -111483905 + L1MA8 LINE L1 1 3147 -3959 603 233 8 0 chr9 30787541 30787661 -111483783 + FLAM_C SINE Alu 1 121 -12 12058 200 41 23 chr9 30787681 30789075 -111482369 + L1MA8 LINE L1 3124 4492 -2759 347 60 20 0 chr9 30789075 30789125 -111482319 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 1532 193 11 21 chr9 30789126 30789411 -111482033 - AluJo SINE Alu -30 282 1 12058 200 41 23 chr9 30789411 30792068 -111479376 + L1MA8 LINE L1 4491 7246 -5 291 54 0 0 chr9 30793773 30793810 -111477634 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr9 30795706 30795731 -111475713 + AT_rich Low_complexity Low_complexity 1 25 0 1971 141 152 11 chr9 30796082 30796457 -111474987 + MSTA LTR MaLR 1 428 0 225 293 123 28 chr9 30798539 30798645 -111472799 + MLT1I LTR MaLR 126 241 -168 1144 219 8 21 chr9 30800164 30800406 -111471038 - MER8 DNA MER2_type 0 239 1 2394 81 0 3 chr9 30800484 30800793 -111470651 + AluSc SINE Alu 2 309 0 853 206 22 0 chr9 30800939 30801119 -111470325 - MER5A DNA MER1_type -4 185 2 249 376 120 0 chr9 30801343 30801460 -111469984 - L2 LINE L2 -5 3267 3137 4194 146 79 34 chr9 30801584 30802450 -111468994 + MER4D LTR ERV1 1 664 0 21 82 0 0 chr9 30802830 30802879 -111468565 + AT_rich Low_complexity Low_complexity 1 49 0 1159 102 0 18 chr9 30803074 30803241 -111468203 - AluSq SINE Alu -5 308 145 425 292 88 21 chr9 30803373 30803565 -111467879 + L3 LINE CR1 657 861 -716 242 308 0 22 chr9 30803578 30803669 -111467775 + MLT1L LTR MaLR 1 89 -526 2146 112 29 11 chr9 30803698 30804047 -111467397 - THE1A LTR MaLR 0 355 1 272 311 37 22 chr9 30804113 30804248 -111467196 + MLT1J LTR MaLR 235 371 -140 238 240 0 40 chr9 30804415 30804515 -111466929 + A-rich Low_complexity Low_complexity 2 97 0 306 243 176 34 chr9 30805631 30805779 -111465665 - L1MC/D LINE L1 -2028 5780 5612 30 0 0 0 chr9 30805926 30805956 -111465488 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr9 30806358 30806381 -111465063 + (CA)n Simple_repeat Simple_repeat 2 24 0 397 265 93 40 chr9 30806425 30806576 -111464868 + MIR SINE MIR 32 190 -72 870 311 65 29 chr9 30807335 30807824 -111463620 + LTR33 LTR ERVL 13 519 -2 180 111 0 0 chr9 30808255 30808282 -111463162 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1151 264 53 35 chr9 30808404 30808802 -111462642 + MLT1D LTR MaLR 1 405 -100 234 350 43 17 chr9 30809639 30809756 -111461688 + L2 LINE L2 2677 2796 -518 1831 165 7 7 chr9 30809850 30810153 -111461291 - AluSx SINE Alu -9 303 1 210 71 0 0 chr9 30810175 30810203 -111461241 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1130 166 18 5 chr9 30810412 30810629 -111460815 - L1 LINE L1 -3677 2469 2250 964 139 39 0 chr9 30810629 30810801 -111460643 + L1MA7 LINE L1 6105 6291 0 1820 253 55 33 chr9 30810825 30811374 -111460070 + MER77 LTR ERV1 41 601 -4 2286 110 0 3 chr9 30811665 30811974 -111459470 + AluSg SINE Alu 1 308 -2 356 278 66 69 chr9 30812484 30812801 -111458643 + L2 LINE L2 2964 3279 -34 333 329 73 0 chr9 30813166 30813303 -111458141 + MIR SINE MIR 110 256 -6 955 291 16 4 chr9 30813334 30813585 -111457859 - MIR SINE MIR 0 262 9 224 358 204 11 chr9 30813603 30813779 -111457665 - MIR SINE MIR 0 262 53 616 131 10 0 chr9 30814056 30814155 -111457289 + Tigger2 DNA MER2_type 2 101 -2617 217 236 55 0 chr9 30815999 30816054 -111455390 + L2 LINE L2 3256 3313 0 2031 109 4 0 chr9 30817460 30817735 -111453709 + AluSg SINE Alu 1 276 -34 399 41 0 0 chr9 30817740 30817789 -111453655 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 231 266 48 81 chr9 30818087 30818211 -111453233 - MIR SINE MIR -4 258 139 190 378 65 44 chr9 30818274 30818529 -111452915 + L2 LINE L2 2395 2663 -651 1908 153 0 0 chr9 30818529 30818839 -111452605 - AluSx SINE Alu 0 310 1 190 378 65 44 chr9 30818839 30818966 -111452478 + L2 LINE L2 2663 2786 -528 2120 158 101 5 chr9 30819223 30819629 -111451815 + MER65A LTR ERV1 1 445 0 248 271 34 68 chr9 30822065 30822183 -111449261 - MIR SINE MIR -65 197 84 219 336 62 31 chr9 30822237 30822365 -111449079 + MIR SINE MIR 105 236 -26 1455 232 55 8 chr9 30822413 30822779 -111448665 - MLT1B LTR MaLR 0 390 8 1717 247 36 38 chr9 30822780 30823230 -111448214 - MLT1B-int LTR MaLR -8 1727 1279 1653 136 29 0 chr9 30823422 30823695 -111447749 - L1PA13 LINE L1 -1 6162 5882 952 223 38 17 chr9 30823773 30824069 -111447375 - MLT1B-int LTR MaLR -487 884 491 1505 163 30 95 chr9 30824089 30824457 -111446987 + MER7A DNA MER2_type 2 343 -3 406 384 56 30 chr9 30825147 30825415 -111446029 + L2 LINE L2 2998 3272 0 24 0 0 0 chr9 30825648 30825672 -111445772 + AT_rich Low_complexity Low_complexity 1 24 0 686 286 84 47 chr9 30825781 30826208 -111445236 + MLT1J1 LTR MaLR 4 446 0 276 170 0 0 chr9 30826663 30826716 -111444728 + GA-rich Low_complexity Low_complexity 4 56 0 383 212 50 10 chr9 30827544 30827643 -111443801 - Charlie2b DNA MER1_type -2114 668 566 471 301 29 34 chr9 30827686 30827892 -111443552 - Charlie2b DNA MER1_type -2502 280 76 312 269 77 69 chr9 30828083 30828213 -111443231 + MIR3 SINE MIR 5 135 -73 208 363 118 15 chr9 30828384 30828519 -111442925 + L2 LINE L2 3122 3270 -2 536 330 53 23 chr9 30829632 30829974 -111441470 - MLT1J LTR MaLR -46 465 114 201 74 0 0 chr9 30829987 30830014 -111441430 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2260 103 0 0 chr9 30830036 30830338 -111441106 - AluSq SINE Alu -11 302 1 213 369 70 19 chr9 30830757 30830914 -111440530 + MIR SINE MIR 44 208 -54 328 351 23 8 chr9 30831253 30831384 -111440060 + MER5A DNA MER1_type 57 189 0 206 258 83 61 chr9 30831718 30831850 -111439594 - MIR SINE MIR -36 226 92 282 196 0 0 chr9 30832733 30832830 -111438614 + (TA)n Simple_repeat Simple_repeat 1 97 0 395 323 133 5 chr9 30832952 30833147 -111438297 + MIR SINE MIR 2 221 -41 191 209 33 11 chr9 30833316 30833407 -111438037 + (TA)n Simple_repeat Simple_repeat 1 93 0 13354 88 4 64 chr9 30834734 30836909 -111434535 + L1P LINE L1 2983 5026 -1120 730 263 153 26 chr9 30836909 30837512 -111433932 + LTR50 LTR ERVL 33 759 -36 1128 71 19 0 chr9 30837512 30837666 -111433778 + L1PA8A LINE L1 5325 5481 -650 180 368 13 26 chr9 30837902 30837978 -111433466 + MIR SINE MIR 12 86 -176 1099 287 87 35 chr9 30838033 30838525 -111432919 + MLT1H LTR MaLR 19 536 -13 190 268 31 62 chr9 30838550 30838647 -111432797 + MIR SINE MIR 159 252 -10 4543 225 50 39 chr9 30838935 30840366 -111431078 - Charlie1a DNA MER1_type -3 1452 7 282 289 18 24 chr9 30840742 30840908 -111430536 + GA-rich Low_complexity Low_complexity 2 166 0 627 173 91 0 chr9 30841455 30841565 -111429879 - FLAM_C SINE Alu -23 120 1 758 221 4 4 chr9 30842189 30842437 -111429007 + CT-rich Low_complexity Low_complexity 1 248 0 518 320 73 14 chr9 30843489 30843708 -111427736 - MIR SINE MIR -13 249 18 262 206 27 0 chr9 30844327 30844400 -111427044 + GA-rich Low_complexity Low_complexity 2 76 0 213 39 0 0 chr9 30845220 30845246 -111426198 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr9 30845245 30845279 -111426165 + (CA)n Simple_repeat Simple_repeat 1 34 0 1265 237 3 14 chr9 30845868 30846155 -111425289 + AluJo SINE Alu 19 302 -10 195 162 0 0 chr9 30846479 30846516 -111424928 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 26 50 0 0 chr9 30846523 30846563 -111424881 + AT_rich Low_complexity Low_complexity 1 40 0 192 40 0 0 chr9 30847670 30847695 -111423749 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 634 294 0 33 chr9 30847815 30847995 -111423449 - MIR SINE MIR -21 241 68 268 187 147 13 chr9 30848886 30848961 -111422483 + MER3 DNA MER1_type 124 208 -1 3385 153 30 10 chr9 30848997 30849176 -111422268 + L1MA4A LINE L1 5611 5785 -518 315 0 0 0 chr9 30849176 30849211 -111422233 + (CA)n Simple_repeat Simple_repeat 2 36 0 3385 153 30 10 chr9 30849211 30849639 -111421805 + L1MA4A LINE L1 5785 6230 -73 273 196 0 0 chr9 30849718 30849774 -111421670 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 194 274 34 164 chr9 30849900 30850046 -111421398 - L2 LINE L2 -188 3084 2958 396 327 142 9 chr9 30850131 30850357 -111421087 - L2 LINE L2 -498 2816 2561 30 89 0 0 chr9 30850603 30850682 -111420762 + AT_rich Low_complexity Low_complexity 1 79 0 272 315 48 55 chr9 30852136 30852282 -111419162 - MIR SINE MIR -60 202 58 255 308 0 26 chr9 30854176 30854254 -111417190 + L2 LINE L2 3234 3309 -4 1647 294 105 75 chr9 30854705 30855917 -111415527 - L2 LINE L2 -90 3223 1985 17559 164 50 21 chr9 30855955 30858253 -111413191 + L1M1 LINE L1 22 2252 -5313 2543 113 3 6 chr9 30858253 30858617 -111412827 - THE1B LTR MaLR -1 363 1 17559 164 50 21 chr9 30858617 30859005 -111412439 + L1M1 LINE L1 2252 2627 -4938 2242 122 37 8 chr9 30859005 30859359 -111412085 + THE1B LTR MaLR 1 364 0 17559 164 50 21 chr9 30859359 30859756 -111411688 + L1M1 LINE L1 2627 3011 -4554 2104 104 7 3 chr9 30859756 30860053 -111411391 + AluSg SINE Alu 1 298 -12 17559 164 50 21 chr9 30860053 30860259 -111411185 + L1M1 LINE L1 3011 3409 -4156 421 284 139 36 chr9 30860346 30860540 -111410904 - MIR SINE MIR 0 262 49 186 363 20 10 chr9 30860553 30860655 -111410789 + MIR SINE MIR 38 140 -68 28 29 0 0 chr9 30863101 30863136 -111408308 + AT_rich Low_complexity Low_complexity 1 35 0 318 360 94 24 chr9 30863551 30863848 -111407596 + L3b LINE CR1 1105 1422 -161 401 253 133 24 chr9 30864069 30864235 -111407209 + MIR SINE MIR 70 253 -9 186 71 0 0 chr9 30865135 30865163 -111406281 + (CA)n Simple_repeat Simple_repeat 2 29 0 1347 284 66 49 chr9 30865586 30866601 -111404843 + L2 LINE L2 2281 3308 -5 186 330 75 21 chr9 30867381 30867475 -111403969 - L2 LINE L2 -18 3295 3197 308 347 32 63 chr9 30867692 30867882 -111403562 + MER5A DNA MER1_type 3 186 -3 523 297 82 10 chr9 30868733 30868928 -111402516 + MER58C DNA MER1_type 4 212 -3 5331 178 17 20 chr9 30870360 30872243 -111399201 - L1MA7 LINE L1 -1 7709 5832 1331 143 98 0 chr9 30872245 30872489 -111398955 - Tigger5 DNA MER2_type 0 2323 2056 257 245 0 0 chr9 30872495 30872548 -111398896 - Tigger5 DNA MER2_type -2270 53 1 885 124 20 80 chr9 30872549 30872750 -111398694 - L1MA7 LINE L1 -1733 5832 5644 5369 225 22 8 chr9 30872775 30874221 -111397223 - L1MA7 LINE L1 -2596 4969 3505 1262 304 5 29 chr9 30874228 30874639 -111396805 - L1MA7 LINE L1 -5880 1616 1216 22 0 0 0 chr9 30874642 30874664 -111396780 + AT_rich Low_complexity Low_complexity 1 22 0 268 326 61 10 chr9 30875117 30875215 -111396229 + MIR SINE MIR 19 121 -87 22 0 0 0 chr9 30875293 30875315 -111396129 + AT_rich Low_complexity Low_complexity 1 22 0 338 279 254 15 chr9 30875329 30875530 -111395914 + MLT1J1 LTR MaLR 21 269 -177 32391 37 5 2 chr9 30875539 30881658 -111389786 + L1PA3 LINE L1 8 6154 -1 304 313 10 0 chr9 30881805 30881901 -111389543 + MLT1J2 LTR MaLR 354 450 0 750 165 0 0 chr9 30882773 30882894 -111388550 + FLAM_C SINE Alu 1 121 -12 200 306 32 16 chr9 30882954 30883016 -111388428 - L2 LINE L2 -3 3269 3207 2163 96 0 0 chr9 30883166 30883471 -111387973 + AluY SINE Alu 1 305 0 532 338 40 15 chr9 30883525 30883726 -111387718 - MIR SINE MIR -34 228 23 320 309 0 0 chr9 30883788 30883869 -111387575 + MER117 DNA MER1_type 100 180 -17 23 0 0 0 chr9 30886110 30886133 -111385311 + AT_rich Low_complexity Low_complexity 1 23 0 302 223 7 159 chr9 30886512 30886813 -111384631 - MER112 DNA MER1_type 0 256 2 264 122 0 0 chr9 30887250 30887291 -111384153 + MADE1 DNA Mariner 1 41 -39 1824 210 66 16 chr9 30888462 30888904 -111382540 + MLT1C LTR MaLR 3 466 -1 180 342 26 0 chr9 30890230 30890306 -111381138 - MIR SINE MIR -138 124 47 742 314 50 0 chr9 30890419 30890658 -111380786 + MIR SINE MIR 11 261 -1 212 143 0 0 chr9 30890927 30890962 -111380482 + (CA)n Simple_repeat Simple_repeat 2 36 0 914 190 103 115 chr9 30891012 30891225 -111380219 + MER2 DNA MER2_type 2 211 -134 1349 207 4 0 chr9 30891225 30891462 -111379982 + MER8 DNA MER2_type 2 239 0 914 190 103 115 chr9 30891462 30891596 -111379848 + MER2 DNA MER2_type 211 345 0 200 265 0 0 chr9 30892443 30892492 -111378952 + MIR3 SINE MIR 129 177 -31 500 318 41 0 chr9 30893373 30893543 -111377901 - L2 LINE L2 -944 2370 2194 7006 54 0 1 chr9 30893552 30894419 -111377025 - L1PA5 LINE L1 -1 6153 5288 11897 51 3 2 chr9 30894419 30895942 -111375502 + L1PA5 LINE L1 3753 5277 -869 478 331 25 0 chr9 30895942 30896099 -111375345 - L2 LINE L2 -1109 2205 2045 899 118 15 0 chr9 30896399 30896535 -111374909 + AluSg/x SINE Alu 171 308 -1 425 278 43 9 chr9 30896567 30896682 -111374762 + MIR SINE MIR 51 169 -93 21 0 0 0 chr9 30896803 30896824 -111374620 + AT_rich Low_complexity Low_complexity 1 21 0 407 329 110 9 chr9 30897602 30897700 -111373744 - MIR SINE MIR 0 262 175 2001 140 0 0 chr9 30897700 30897993 -111373451 + AluSx SINE Alu 1 293 -19 407 329 110 9 chr9 30897993 30898122 -111373322 - MIR SINE MIR -87 175 12 954 205 15 0 chr9 30900734 30900934 -111370510 + L1PB4 LINE L1 5953 6155 -1 1095 249 14 0 chr9 30901009 30901230 -111370214 - MER58A DNA MER1_type 0 224 1 619 311 65 20 chr9 30903129 30903480 -111367964 + L1PA12 LINE L1 1 367 -7214 259 77 0 96 chr9 30903581 30903633 -111367811 + L1PA16 LINE L1 5725 5771 -395 338 173 10 0 chr9 30903633 30903737 -111367707 + (TA)n Simple_repeat Simple_repeat 2 106 0 1656 168 6 52 chr9 30903737 30904101 -111367343 + L1PA16 LINE L1 5819 6165 -1 899 257 29 33 chr9 30904104 30904349 -111367095 - MIR SINE MIR -15 247 4 22 0 0 0 chr9 30904728 30904750 -111366694 + AT_rich Low_complexity Low_complexity 1 22 0 233 352 44 22 chr9 30905241 30905332 -111366112 + L2 LINE L2 3167 3259 -13 200 213 0 0 chr9 30906532 30906579 -111364865 + (TTAAA)n Simple_repeat Simple_repeat 3 49 0 2054 106 3 3 chr9 30907001 30907285 -111364159 + AluSg SINE Alu 1 284 -26 629 58 0 11 chr9 30907285 30907372 -111364072 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 21 0 0 0 chr9 30907834 30907855 -111363589 + AT_rich Low_complexity Low_complexity 1 21 0 229 353 12 24 chr9 30908473 30908558 -111362886 + L2 LINE L2 3229 3312 -1 24 0 0 0 chr9 30909064 30909088 -111362356 + AT_rich Low_complexity Low_complexity 1 24 0 197 256 221 0 chr9 30909965 30910051 -111361393 + L2 LINE L2 3168 3272 0 2042 182 83 9 chr9 30911166 30911633 -111359811 - L1MA8 LINE L1 -2 6289 5788 1482 182 25 7 chr9 30911650 30911930 -111359514 - AluJo SINE Alu -4 308 24 21 36 0 0 chr9 30912555 30912583 -111358861 + AT_rich Low_complexity Low_complexity 1 28 0 1824 170 0 0 chr9 30912973 30913262 -111358182 - AluSx SINE Alu -23 289 1 282 369 74 23 chr9 30913377 30913553 -111357891 + MIR SINE MIR 49 233 -29 315 65 0 0 chr9 30914054 30914100 -111357344 + (GA)n Simple_repeat Simple_repeat 1 46 0 1012 251 49 0 chr9 30914136 30914359 -111357085 + MLT1H LTR MaLR 58 291 -258 345 367 130 0 chr9 30914809 30914978 -111356466 + MIR SINE MIR 1 191 -71 842 247 140 2 chr9 30915940 30916455 -111354989 - L1MD3 LINE L1 -11 7984 7145 1275 263 88 55 chr9 30916467 30916870 -111354574 + HsTC2a DNA Tc2 3 391 -1509 243 0 0 0 chr9 30916870 30916897 -111354547 + (TGG)n Simple_repeat Simple_repeat 3 29 0 261 0 0 0 chr9 30916897 30916926 -111354518 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1966 127 0 0 chr9 30916931 30917207 -111354237 - AluSx SINE Alu -36 276 1 1275 263 88 55 chr9 30917207 30917453 -111353991 + HsTC2a DNA Tc2 394 681 -63 381 232 113 13 chr9 30918050 30918201 -111353243 - MER112 DNA MER1_type -88 172 7 864 222 26 10 chr9 30918330 30918524 -111352920 - MER3 DNA MER1_type -11 198 2 189 0 0 0 chr9 30919003 30919024 -111352420 + (TA)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr9 30919259 30919283 -111352161 + AT_rich Low_complexity Low_complexity 1 24 0 1770 150 0 7 chr9 30919447 30919721 -111351723 + AluSx SINE Alu 25 296 -16 212 245 0 0 chr9 30919744 30919793 -111351651 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 212 235 78 0 chr9 30920013 30920064 -111351380 + MIR SINE MIR 47 101 -107 24 0 0 0 chr9 30920186 30920210 -111351234 + AT_rich Low_complexity Low_complexity 1 24 0 394 250 40 0 chr9 30920790 30920890 -111350554 - MIR3 SINE MIR -1 207 104 349 362 40 0 chr9 30923424 30923598 -111347846 + MIR SINE MIR 79 259 -3 993 236 129 10 chr9 30923665 30924067 -111347377 - L1ME LINE L1 -346 5816 5367 2262 220 49 49 chr9 30926870 30927912 -111343532 + L1MD1 LINE L1 4490 5575 -784 297 119 0 0 chr9 30927912 30927954 -111343490 + 5S rRNA rRNA 1 42 -79 2262 220 49 49 chr9 30927954 30928224 -111343220 + L1MD1 LINE L1 5575 5844 -515 663 163 0 8 chr9 30928325 30928448 -111342996 - L1MA8 LINE L1 -6 6285 6164 939 204 29 37 chr9 30928453 30928698 -111342746 + L1MD1 LINE L1 5831 6073 -169 282 185 74 0 chr9 30928703 30928784 -111342660 + L1MD2 LINE L1 6273 6359 0 255 291 46 86 chr9 30928940 30929091 -111342353 + MIR3 SINE MIR 18 162 -46 539 324 28 16 chr9 30929679 30929929 -111341515 + MIR SINE MIR 8 260 -2 768 278 49 4 chr9 30930163 30930408 -111341036 + L1MC4a LINE L1 5521 5776 -2032 1590 147 18 70 chr9 30930414 30930741 -111340703 - Tigger7 DNA MER2_type -1 2486 2177 1374 221 4 29 chr9 30930746 30931026 -111340418 - Tigger7 DNA MER2_type -2214 273 1 577 261 0 28 chr9 30931026 30931202 -111340242 + L1MC4a LINE L1 5780 5950 -1858 488 139 9 83 chr9 30931195 30931303 -111340141 + L1MA1 LINE L1 3877 3976 -2170 * 3308 212 18 0 chr9 30931309 30931968 -111339476 - L1P4 LINE L1 -1473 4673 4003 2421 188 18 0 chr9 30931977 30932483 -111338961 + L1P4 LINE L1 4680 5194 -952 1555 119 0 0 chr9 30932483 30932693 -111338751 + AluSx SINE Alu 1 210 -102 246 89 36 36 chr9 30932693 30932749 -111338695 + AluSx SINE Alu 247 302 0 1977 96 58 16 chr9 30932767 30933159 -111338285 + L1P4 LINE L1 5176 5576 -585 6847 142 21 27 chr9 30933160 30933505 -111337939 + L1MA1 LINE L1 3988 4334 -1968 1839 161 0 31 chr9 30933505 30933827 -111337617 + AluSx SINE Alu 1 312 0 6847 142 21 27 chr9 30933827 30935720 -111335724 + L1MA1 LINE L1 4334 6211 -91 2051 110 14 0 chr9 30935720 30936010 -111335434 - AluSx SINE Alu -18 294 1 6847 142 21 27 chr9 30936010 30936102 -111335342 + L1MA1 LINE L1 6211 6302 0 414 237 0 46 chr9 30936109 30936240 -111335204 + L1MC4a LINE L1 5925 6049 -1759 2352 156 100 8 chr9 30936692 30937161 -111334283 - L1MC1 LINE L1 -18 6315 5804 644 310 39 0 chr9 30937447 30937650 -111333794 + MIR SINE MIR 28 238 -24 398 184 13 0 chr9 30937692 30937768 -111333676 + MER116 DNA Mariner 4 80 0 489 86 0 0 chr9 30939029 30939106 -111332338 - L1PA4 LINE L1 -164 5992 5916 1340 25 0 0 chr9 30939106 30939258 -111332186 + L1PA4 LINE L1 5994 6152 -3 28 29 0 0 chr9 30939642 30939677 -111331767 + AT_rich Low_complexity Low_complexity 1 35 0 2151 108 0 0 chr9 30940626 30940921 -111330523 + AluSx SINE Alu 4 298 -14 1167 177 5 5 chr9 30941027 30941242 -111330202 - L1MB1 LINE L1 -302 5866 5652 5680 144 25 39 chr9 30941255 30942950 -111328494 - L1PB1 LINE L1 -1 6150 4482 1690 305 69 44 chr9 30943091 30944522 -111326922 + L1ME1 LINE L1 117 1583 -4813 1780 255 97 24 chr9 30944661 30945014 -111326430 + L1ME1 LINE L1 4382 4708 -1507 512 111 12 0 chr9 30945014 30945130 -111326314 + L1MA2 LINE L1 6220 6336 0 1780 255 97 24 chr9 30945130 30945614 -111325830 + L1ME1 LINE L1 4708 5281 -934 890 264 119 56 chr9 30945617 30946825 -111324619 + L1ME LINE L1 19 1301 -4779 410 195 47 22 chr9 30946811 30946932 -111324512 + L1ME1 LINE L1 5835 5965 -282 * 4307 187 32 17 chr9 30946940 30948467 -111322977 + L1MB3 LINE L1 4548 6094 -89 1779 153 20 7 chr9 30949093 30949387 -111322057 - AluSq SINE Alu -15 298 1 193 330 71 36 chr9 30949561 30949673 -111321771 + MIR SINE MIR 146 261 -1 2005 173 16 3 chr9 30950898 30951285 -111320159 - L1P LINE L1 -931 5215 4824 28 29 0 0 chr9 30953264 30953299 -111318145 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr9 30953881 30953923 -111317521 + AT_rich Low_complexity Low_complexity 1 42 0 237 363 137 6 chr9 30954165 30954333 -111317111 + L3 LINE CR1 411 600 -977 699 339 140 36 chr9 30954345 30954989 -111316455 + L3 LINE CR1 707 1417 -160 207 344 44 11 chr9 30955433 30955523 -111315921 + L3 LINE CR1 1484 1576 -1 210 143 0 0 chr9 30955751 30955786 -111315658 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 312 223 115 46 chr9 30955795 30955925 -111315519 - MIR SINE MIR -59 203 65 22 56 0 0 chr9 30956554 30956590 -111314854 + AT_rich Low_complexity Low_complexity 1 36 0 314 240 10 19 chr9 30956720 30956824 -111314620 + (TA)n Simple_repeat Simple_repeat 1 103 0 441 0 0 0 chr9 30956841 30956890 -111314554 + (TATTG)n Simple_repeat Simple_repeat 2 50 0 777 237 0 7 chr9 30956890 30957042 -111314402 - FRAM SINE Alu -25 151 1 399 41 0 0 chr9 30957169 30957218 -111314226 + (TA)n Simple_repeat Simple_repeat 1 49 0 471 293 79 56 chr9 30957705 30957920 -111313524 + MIR SINE MIR 13 232 -30 467 245 5 92 chr9 30958013 30958197 -111313247 + L1MB7 LINE L1 6007 6174 -10 659 185 15 7 chr9 30958442 30958577 -111312867 + MER3 DNA MER1_type 47 182 -27 264 213 0 0 chr9 30958610 30958671 -111312773 + CT-rich Low_complexity Low_complexity 1 61 0 1023 252 75 6 chr9 30959092 30959410 -111312034 + MER58B DNA MER1_type 1 340 -1 2129 71 61 30 chr9 30960365 30960662 -111310782 - AluY SINE Alu -5 306 1 1027 230 77 38 chr9 30961573 30961860 -111309584 - AluJo SINE Alu 0 302 5 243 119 45 0 chr9 30962265 30962332 -111309112 + (TA)n Simple_repeat Simple_repeat 1 70 0 190 308 39 39 chr9 30962341 30962419 -111309025 - MIR SINE MIR -147 115 38 372 244 47 0 chr9 30962433 30962542 -111308902 + MIR SINE MIR 64 178 -30 188 301 124 26 chr9 30964500 30964613 -111306831 - MER5A DNA MER1_type -1 188 65 * 314 180 11 56 chr9 30964612 30964701 -111306743 - MIR SINE MIR -49 213 129 311 253 112 47 chr9 30965555 30965725 -111305719 - MIR SINE MIR -1 261 81 6954 50 8 8 chr9 30965740 30966662 -111304782 - L1PA5 LINE L1 -2604 3542 2618 14666 44 2 1 chr9 30966662 30969280 -111302164 + L1PA5 LINE L1 3539 6154 0 6954 50 8 8 chr9 30969280 30969297 -111302147 - L1P LINE L1 -3527 2619 2603 236 262 24 71 chr9 30970518 30970602 -111300842 + L2 LINE L2 3233 3312 -1 279 54 0 0 chr9 30970968 30971005 -111300439 + (A)n Simple_repeat Simple_repeat 1 37 0 241 374 75 14 chr9 30971067 30971214 -111300230 - MIR SINE MIR 0 262 107 223 244 0 115 chr9 30971459 30971537 -111299907 - MIR SINE MIR -101 161 93 260 325 70 9 chr9 30972117 30972231 -111299213 + MIR3 SINE MIR 38 158 -50 1950 105 60 3 chr9 30972578 30972863 -111298581 - AluSx SINE Alu -11 301 1 368 316 124 10 chr9 30972885 30973078 -111298366 + MIR SINE MIR 45 259 -3 267 347 21 35 chr9 30973117 30973261 -111298183 - MIR SINE MIR -120 142 1 601 278 106 20 chr9 30973474 30973672 -111297772 + MIR SINE MIR 35 249 -13 360 238 119 7 chr9 30973713 30973856 -111297588 + MIR SINE MIR 104 262 0 27 100 0 0 chr9 30974875 30974965 -111296479 + AT_rich Low_complexity Low_complexity 1 90 0 407 252 65 0 chr9 30975549 30975656 -111295788 + L2 LINE L2 3196 3309 -4 24 32 0 0 chr9 30975740 30975771 -111295673 + AT_rich Low_complexity Low_complexity 1 31 0 256 328 85 53 chr9 30976002 30976249 -111295195 + L2 LINE L2 3018 3272 0 21 36 0 0 chr9 30976443 30976471 -111294973 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 30977019 30977041 -111294403 + AT_rich Low_complexity Low_complexity 1 22 0 617 313 48 36 chr9 30977736 30977985 -111293459 - MIR SINE MIR 0 262 11 277 80 20 20 chr9 30978693 30978743 -111292701 + (TA)n Simple_repeat Simple_repeat 2 51 0 309 68 0 0 chr9 30978744 30978788 -111292656 + (GA)n Simple_repeat Simple_repeat 1 44 0 30 83 0 0 chr9 30979073 30979145 -111292299 + AT_rich Low_complexity Low_complexity 1 72 0 25 83 0 0 chr9 30979179 30979239 -111292205 + AT_rich Low_complexity Low_complexity 1 60 0 249 317 32 0 chr9 30980096 30980219 -111291225 - MIR SINE MIR -6 202 75 1279 219 25 7 chr9 30980232 30980558 -111290886 + MER33 DNA MER1_type 1 324 0 207 0 0 0 chr9 30981115 30981138 -111290306 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2112 138 0 0 chr9 30981960 30982272 -111289172 - AluSx SINE Alu 0 312 1 21 36 0 0 chr9 30982597 30982625 -111288819 + AT_rich Low_complexity Low_complexity 1 28 0 434 320 83 45 chr9 30984004 30984135 -111287309 - L2 LINE L2 -143 3129 3004 336 102 0 0 chr9 30984135 30984184 -111287260 + (CA)n Simple_repeat Simple_repeat 2 50 0 434 320 83 45 chr9 30984184 30984549 -111286895 - L2 LINE L2 -268 3004 2623 5867 153 8 39 chr9 30984550 30986001 -111285443 + L1MA2 LINE L1 4621 6013 -291 1931 138 10 3 chr9 30986001 30986292 -111285152 + AluSx SINE Alu 1 293 -19 5867 153 8 39 chr9 30986292 30986576 -111284868 + L1MA2 LINE L1 6013 6304 0 200 338 26 0 chr9 30986606 30986683 -111284761 - L2 LINE L2 -685 2629 2551 2165 99 13 89 chr9 30987176 30987568 -111283876 - L1MA2 LINE L1 -259 6046 5685 2318 81 0 0 chr9 30987771 30988067 -111283377 - AluY SINE Alu -15 296 1 33 56 0 0 chr9 30989212 30989266 -111282178 + AT_rich Low_complexity Low_complexity 1 54 0 580 277 110 15 chr9 30989535 30989754 -111281690 + MIR SINE MIR 17 254 -8 1907 120 141 46 chr9 30989866 30990257 -111281187 + MSTA LTR MaLR 1 428 0 235 394 81 6 chr9 30990591 30990751 -111280693 - MIR3 SINE MIR -7 201 30 965 239 152 115 chr9 30991221 30991812 -111279632 + MLT1E1 LTR MaLR 42 654 0 199 261 108 0 chr9 30992017 30992082 -111279362 - MIR SINE MIR -70 192 121 180 346 48 19 chr9 30992200 30992304 -111279140 + L2 LINE L2 3207 3313 0 333 329 67 7 chr9 30992435 30992584 -111278860 - MIR SINE MIR -74 188 31 2368 45 0 7 chr9 30996011 30996320 -111275124 - AluY SINE Alu 0 307 1 2241 83 3 0 chr9 30996374 30996675 -111274769 - AluY SINE Alu -9 302 1 230 160 20 0 chr9 30997162 30997212 -111274232 + (TA)n Simple_repeat Simple_repeat 2 52 0 253 200 0 14 chr9 30997524 30997594 -111273850 + L1MCa LINE L1 1996 2064 -4362 209 145 16 65 chr9 30997706 30997768 -111273676 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 773 232 28 6 chr9 30997933 30998114 -111273330 + MER5A DNA MER1_type 5 189 0 454 326 118 0 chr9 30998513 30998700 -111272744 - MIR SINE MIR -11 251 43 6282 153 27 4 chr9 30998781 30999863 -111271581 + HSMAR2 DNA Mariner 9 1115 -187 360 0 0 0 chr9 31000067 31000107 -111271337 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3280 40 2 2 chr9 31000107 31000507 -111270937 - L1PA4 LINE L1 -18 6137 5738 1088 163 5 0 chr9 31000519 31000703 -111270741 + HSMAR2 DNA Mariner 1115 1299 -3 21 57 0 0 chr9 31000955 31000990 -111270454 + AT_rich Low_complexity Low_complexity 1 35 0 257 338 165 0 chr9 31002674 31002807 -111268637 + MIR SINE MIR 87 241 -21 1084 306 67 16 chr9 31002809 31002955 -111268489 - LTR16A1 LTR ERVL -2 455 318 525 241 116 60 chr9 31002955 31003154 -111268290 + MER63A DNA MER1_type 1 210 0 1084 306 67 16 chr9 31003154 31003439 -111268005 - LTR16A1 LTR ERVL -139 318 2 1340 307 101 22 chr9 31004101 31004867 -111266577 + L1M3a LINE L1 2 728 -5227 837 158 49 18 chr9 31004864 31005028 -111266416 + L1 LINE L1 5128 5296 -850 * 1968 97 3 45 chr9 31005264 31005552 -111265892 - AluSx SINE Alu -4 308 33 463 340 88 4 chr9 31006390 31006628 -111264816 + MIR SINE MIR 3 260 -2 21 36 0 0 chr9 31006977 31007005 -111264439 + AT_rich Low_complexity Low_complexity 1 28 0 282 316 117 0 chr9 31007215 31007421 -111264023 + HAL1 LINE L1 1188 1417 -1090 314 292 21 0 chr9 31007443 31007539 -111263905 - HAL1 LINE L1 -976 1531 1434 239 250 91 0 chr9 31007642 31007730 -111263714 + HAL1 LINE L1 2323 2418 -89 27 73 0 0 chr9 31007815 31007870 -111263574 + AT_rich Low_complexity Low_complexity 1 55 0 533 259 152 13 chr9 31008596 31008754 -111262690 - MER5A DNA MER1_type 0 189 10 25 51 0 0 chr9 31009351 31009390 -111262054 + AT_rich Low_complexity Low_complexity 1 39 0 6795 66 6 3 chr9 31009654 31011120 -111260324 + L1PA8 LINE L1 4698 6164 -8 408 308 9 3 chr9 31011910 31012048 -111259396 + MIR SINE MIR 10 146 -62 3084 133 144 32 chr9 31012460 31013030 -111258414 + MER51A LTR ERV1 1 634 0 3768 179 30 109 chr9 31013030 31014151 -111257293 + MER51A-int LTR ERV1 1 1007 -3873 * 8049 137 65 16 chr9 31014121 31015635 -111255809 + HERV9 LTR ERV1 455 2043 -6077 778 151 108 11 chr9 31015645 31015831 -111255613 + HERV9 LTR ERV1 3322 3525 -2421 * 910 334 31 31 chr9 31015829 31016680 -111254764 + HERV9 LTR ERV1 4624 6156 -1600 292 185 19 0 chr9 31016848 31016902 -111254542 + HERV9 LTR ERV1 7488 7542 -274 274 263 26 26 chr9 31017055 31017169 -111254275 + HERV9 LTR ERV1 6662 6775 -1624 1504 168 4 0 chr9 31017647 31017903 -111253541 + HERV9 LTR ERV1 7558 7814 -2 2206 112 87 1 chr9 31017909 31018411 -111253033 + MER51A LTR ERV1 1 616 -18 724 193 0 30 chr9 31018569 31018704 -111252740 - FLAM_A SINE Alu 0 133 3 188 340 10 30 chr9 31018731 31018831 -111252613 + L2 LINE L2 2610 2707 -607 382 308 25 17 chr9 31019165 31019285 -111252159 - MIR SINE MIR -69 139 19 382 225 108 0 chr9 31020281 31020401 -111251043 - L1ME4a LINE L1 -237 5884 5752 2163 121 0 0 chr9 31020964 31021262 -111250182 + AluSg SINE Alu 1 298 -12 1885 143 76 12 chr9 31021316 31021658 -111249786 - L1MB2 LINE L1 0 6171 5808 425 339 135 28 chr9 31021907 31022559 -111248885 + L2 LINE L2 1625 2346 -968 216 388 39 8 chr9 31022889 31023018 -111248426 + MIR3 SINE MIR 69 201 -7 721 297 31 9 chr9 31023466 31023695 -111247749 + MIR SINE MIR 29 262 0 202 315 41 0 chr9 31024361 31024434 -111247010 - MIR SINE MIR -89 173 98 1773 260 58 30 chr9 31024526 31025095 -111246349 + MLT1E LTR MaLR 1 585 -8 23 0 0 0 chr9 31025101 31025124 -111246320 + AT_rich Low_complexity Low_complexity 1 23 0 880 342 26 6 chr9 31025202 31025553 -111245891 + L1M3d LINE L1 423 780 -5523 3142 252 98 25 chr9 31025725 31028276 -111243168 + L1M3d LINE L1 777 3409 -2973 4102 197 33 42 chr9 31028301 31029361 -111242083 + L1M3d LINE L1 4195 5245 -1137 3895 173 17 4 chr9 31029358 31030079 -111241365 - L1P LINE L1 -895 5251 4522 * 228 189 19 19 chr9 31031554 31031627 -111239817 + (TATG)n Simple_repeat Simple_repeat 1 73 0 1649 101 4 0 chr9 31031843 31032070 -111239374 + AluSc SINE Alu 82 309 0 325 68 356 0 chr9 31032106 31032165 -111239279 + MADE1 DNA Mariner 1 80 0 23 78 0 0 chr9 31032845 31032896 -111238548 + AT_rich Low_complexity Low_complexity 1 51 0 220 276 38 57 chr9 31034037 31034142 -111237302 - MIR SINE MIR -103 159 57 23 54 0 0 chr9 31034871 31034908 -111236536 + AT_rich Low_complexity Low_complexity 1 37 0 298 244 47 0 chr9 31034954 31035040 -111236404 + AluJo SINE Alu 62 151 -151 758 346 35 77 chr9 31035041 31035648 -111235796 + L1PA13 LINE L1 798 1378 -6196 4646 246 34 19 chr9 31035751 31037579 -111233865 + L1PA13 LINE L1 2203 4069 -3515 244 262 36 0 chr9 31037586 31037670 -111233774 + L1PA13 LINE L1 4847 4933 -2651 * 5019 143 31 0 chr9 31037659 31038489 -111232955 + L1PA16 LINE L1 5301 6156 -10 28 29 0 0 chr9 31038490 31038525 -111232919 + AT_rich Low_complexity Low_complexity 1 35 0 2410 55 0 19 chr9 31039849 31040157 -111231287 + AluY SINE Alu 1 302 -9 277 286 158 41 chr9 31040587 31040783 -111230661 + MIR SINE MIR 17 235 -27 1475 187 6 48 chr9 31043747 31044062 -111227382 + AluJo SINE Alu 1 302 -10 228 167 0 0 chr9 31044413 31044461 -111226983 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 255 103 0 0 chr9 31044460 31044499 -111226945 + (GA)n Simple_repeat Simple_repeat 1 39 0 1877 101 19 4 chr9 31045261 31045518 -111225926 + AluSq SINE Alu 1 261 -52 858 254 0 5 chr9 31045737 31045926 -111225518 - MER5A DNA MER1_type -1 188 1 489 293 153 22 chr9 31045967 31046189 -111225255 + MIR SINE MIR 2 252 -10 3103 126 64 66 chr9 31046465 31047074 -111224370 + LTR18B LTR ERVL 1 608 -6 855 217 44 6 chr9 31047218 31047398 -111224046 - MER5A DNA MER1_type -1 188 2 2115 135 0 0 chr9 31047610 31047906 -111223538 - AluSx SINE Alu -16 296 1 26 64 0 0 chr9 31048405 31048452 -111222992 + AT_rich Low_complexity Low_complexity 1 47 0 210 219 0 0 chr9 31048652 31048693 -111222751 + GA-rich Low_complexity Low_complexity 2 42 0 1621 291 98 17 chr9 31049497 31050039 -111221405 + MLT1G1 LTR MaLR 3 588 -7 225 65 0 0 chr9 31050392 31050423 -111221021 + (CA)n Simple_repeat Simple_repeat 2 32 0 347 175 33 183 chr9 31050947 31051067 -111220377 - L2 LINE L2 -9 3304 3203 236 233 221 12 chr9 31052099 31052185 -111219259 + MER102b DNA MER1_type 235 338 -3 270 359 46 23 chr9 31053769 31053900 -111217544 + MIR SINE MIR 16 149 -59 503 322 44 67 chr9 31054081 31054441 -111217003 + MLT1L LTR MaLR 127 478 -137 2103 117 27 0 chr9 31054634 31054934 -111216510 - AluSx SINE Alu -4 308 1 5343 122 24 15 chr9 31055062 31055407 -111216037 + L1PB4 LINE L1 5237 5577 -579 1935 112 24 0 chr9 31055407 31055720 -111215724 + AluSc SINE Alu 1 309 0 5343 122 24 15 chr9 31055720 31056286 -111215158 + L1PB4 LINE L1 5577 6156 0 320 315 132 21 chr9 31056456 31056691 -111214753 + L1MC/D LINE L1 5356 5616 -2192 337 205 0 12 chr9 31057260 31057343 -111214101 + L1MC/D LINE L1 5712 5793 -2015 21 0 0 0 chr9 31058254 31058275 -111213169 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 31059478 31059499 -111211945 + AT_rich Low_complexity Low_complexity 1 21 0 2124 132 0 0 chr9 31060665 31060961 -111210483 + AluSg SINE Alu 1 296 -14 2152 79 0 0 chr9 31061209 31061475 -111209969 - AluSg SINE Alu -8 302 37 21 0 0 0 chr9 31061516 31061537 -111209907 + AT_rich Low_complexity Low_complexity 1 21 0 422 285 106 0 chr9 31061765 31061916 -111209528 - MIR SINE MIR -11 251 85 272 257 14 14 chr9 31063009 31063079 -111208365 - MIR SINE MIR -118 144 75 429 220 121 38 chr9 31063118 31063250 -111208194 + MER69A DNA AcHobo 33 175 -2 1815 151 0 0 chr9 31063734 31064022 -111207422 - AluSq SINE Alu 0 308 21 210 167 0 0 chr9 31064075 31064111 -111207333 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 277 359 67 50 chr9 31064115 31064474 -111206970 - L2 LINE L2 0 3313 2949 511 274 0 32 chr9 31064528 31064652 -111206792 + FLAM_A SINE Alu 1 120 -13 234 0 0 0 chr9 31064652 31064678 -111206766 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 396 0 0 0 chr9 31064845 31064889 -111206555 + (TA)n Simple_repeat Simple_repeat 2 45 0 2166 122 0 0 chr9 31065095 31065391 -111206053 - AluSx SINE Alu -16 296 1 221 185 0 19 chr9 31066542 31066596 -111204848 + A-rich Low_complexity Low_complexity 3 55 0 399 292 61 57 chr9 31066807 31066981 -111204463 + MIR SINE MIR 21 194 -52 23 33 0 0 chr9 31067019 31067049 -111204395 + AT_rich Low_complexity Low_complexity 1 30 0 209 349 58 0 chr9 31067637 31067723 -111203721 - MER91C DNA MER1_type -49 91 1 286 259 19 83 chr9 31069259 31069367 -111202077 + L2 LINE L2 3213 3313 0 394 161 35 0 chr9 31070351 31070438 -111201006 + CT-rich Low_complexity Low_complexity 3 92 0 931 295 127 28 chr9 31070608 31071106 -111200338 - MLT1H LTR MaLR -2 547 1 249 363 39 10 chr9 31071764 31071866 -111199578 + MIR3 SINE MIR 89 193 -15 341 290 84 0 chr9 31072466 31072573 -111198871 + MIR SINE MIR 121 236 -26 255 330 9 28 chr9 31072720 31072829 -111198615 - MIR SINE MIR -86 122 16 189 0 0 0 chr9 31073467 31073488 -111197956 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr9 31073657 31073692 -111197752 + AT_rich Low_complexity Low_complexity 1 35 0 6364 63 12 94 chr9 31073704 31074743 -111196701 - SVA Other Other 0 1386 433 5834 54 17 60 chr9 31074847 31075752 -111195692 - SVA Other Other -520 866 1 25 0 0 0 chr9 31075824 31075849 -111195595 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr9 31075965 31076000 -111195444 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 31076395 31076416 -111195028 + AT_rich Low_complexity Low_complexity 1 21 0 269 277 62 0 chr9 31077433 31077498 -111193946 - L2 LINE L2 -16 3256 3188 440 256 26 103 chr9 31078498 31078654 -111192790 + MER91A DNA MER1_type 9 152 -44 240 268 134 18 chr9 31079695 31079879 -111191565 + MIR SINE MIR 42 247 -15 2330 231 75 26 chr9 31080441 31080711 -111190733 - L1MD2 LINE L1 -73 6286 6017 568 286 30 90 chr9 31080711 31081032 -111190412 - L1MB8 LINE L1 -171 6007 5729 285 51 0 0 chr9 31081032 31081071 -111190373 + (TG)n Simple_repeat Simple_repeat 2 40 0 568 286 30 90 chr9 31081071 31081280 -111190164 - L1MB8 LINE L1 -449 5729 5509 575 216 93 25 chr9 31081569 31081731 -111189713 + MER105 DNA DNA 31 203 -1 24 32 0 0 chr9 31083164 31083195 -111188249 + AT_rich Low_complexity Low_complexity 1 31 0 582 310 42 61 chr9 31084659 31085036 -111186408 - MLT1I LTR MaLR -13 396 27 3074 157 43 12 chr9 31086218 31086804 -111184640 - L1MC3 LINE L1 -2 7783 7180 256 240 40 13 chr9 31086804 31086879 -111184565 - MLT1F1 LTR MaLR -456 111 35 511 175 29 0 chr9 31086879 31086982 -111184462 - L1MC3 LINE L1 -688 7097 6992 300 125 0 18 chr9 31087007 31087063 -111184381 - L1MB8 LINE L1 -5 6173 6119 296 326 30 53 chr9 31087534 31087666 -111183778 - MIR SINE MIR -61 147 19 28 29 0 0 chr9 31087864 31087899 -111183545 + AT_rich Low_complexity Low_complexity 1 35 0 190 374 30 0 chr9 31089002 31089101 -111182343 + L3 LINE CR1 1452 1553 -24 311 285 15 80 chr9 31090085 31090222 -111181222 + L2 LINE L2 3141 3268 -4 269 191 48 0 chr9 31090359 31090422 -111181022 - L1ME LINE L1 -369 5793 5728 * 2142 241 90 10 chr9 31090406 31090743 -111180701 - L1ME LINE L1 -1894 4252 3943 1947 110 57 3 chr9 31090743 31091025 -111180419 - AluSc SINE Alu -12 297 1 2142 241 90 10 chr9 31091025 31091389 -111180055 - L1ME LINE L1 -2203 3943 3495 1474 225 45 5 chr9 31091403 31091803 -111179641 - L1MB8 LINE L1 -1 6177 5762 240 253 25 13 chr9 31091810 31091889 -111179555 - L1ME LINE L1 -2634 3512 3433 418 305 43 65 chr9 31091923 31092202 -111179242 - L1MB8 LINE L1 -463 5658 5386 258 250 0 0 chr9 31092698 31092770 -111178674 + (TA)n Simple_repeat Simple_repeat 1 72 0 295 213 28 28 chr9 31092785 31092893 -111178551 + (TA)n Simple_repeat Simple_repeat 1 108 0 24 0 0 0 chr9 31094153 31094177 -111177267 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 31094278 31094299 -111177145 + AT_rich Low_complexity Low_complexity 1 21 0 265 345 47 14 chr9 31094395 31094554 -111176890 - MIR SINE MIR -57 151 3 21 36 0 0 chr9 31095038 31095066 -111176378 + AT_rich Low_complexity Low_complexity 1 28 0 207 162 0 0 chr9 31095183 31095220 -111176224 + GA-rich Low_complexity Low_complexity 3 39 0 21 0 0 0 chr9 31095337 31095358 -111176086 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 31096380 31096402 -111175042 + AT_rich Low_complexity Low_complexity 1 22 0 256 24 24 24 chr9 31097235 31097277 -111174167 + (TTCTC)n Simple_repeat Simple_repeat 5 46 0 373 300 148 77 chr9 31097765 31098271 -111173173 + L1M2 LINE L1 359 900 -5949 22 0 0 0 chr9 31098276 31098298 -111173146 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr9 31099150 31099190 -111172254 + GC_rich Low_complexity Low_complexity 1 40 0 241 235 0 0 chr9 31099277 31099328 -111172116 + (CACG)n Simple_repeat Simple_repeat 3 53 0 268 360 72 0 chr9 31102252 31102363 -111169081 + L2 LINE L2 3121 3239 -33 198 0 0 0 chr9 31102375 31102397 -111169047 + (ATG)n Simple_repeat Simple_repeat 3 24 0 253 338 120 40 chr9 31102404 31102629 -111168815 - MIR SINE MIR -12 250 8 787 149 13 1 chr9 31102972 31103110 -111168334 + L1MB1 LINE L1 6025 6176 -7 370 271 25 0 chr9 31103266 31103384 -111168060 + L1MC4a LINE L1 5781 5901 -1907 186 43 0 0 chr9 31103588 31103611 -111167833 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1212 196 12 154 chr9 31103721 31104144 -111167300 - MLT1A2 LTR MaLR -11 363 1 616 305 64 4 chr9 31104615 31104848 -111166596 - MIR SINE MIR 0 262 16 287 324 82 60 chr9 31104994 31105044 -111166400 - MIR SINE MIR -29 233 186 2127 130 0 3 chr9 31105044 31105343 -111166101 - AluSg SINE Alu -12 298 1 287 324 82 60 chr9 31105343 31105474 -111165970 - MIR SINE MIR -76 186 48 262 297 14 0 chr9 31106184 31106258 -111165186 + MIR SINE MIR 15 89 -173 1509 194 29 57 chr9 31106543 31106893 -111164551 + MLT1B LTR MaLR 47 386 -4 464 306 172 47 chr9 31107838 31108221 -111163223 - MLT1J LTR MaLR -53 458 28 25 0 0 0 chr9 31108469 31108494 -111162950 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 31109141 31109166 -111162278 + AT_rich Low_complexity Low_complexity 1 25 0 2318 115 3 0 chr9 31109539 31109851 -111161593 - AluSq SINE Alu 0 313 1 552 184 0 18 chr9 31109877 31109991 -111161453 - L1MA9 LINE L1 -36 6276 6165 218 276 10 31 chr9 31109991 31110022 -111161422 + (TA)n Simple_repeat Simple_repeat 2 32 -65 213 65 0 0 chr9 31110022 31110053 -111161391 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 276 10 31 chr9 31110053 31110119 -111161325 + (TA)n Simple_repeat Simple_repeat 32 97 0 437 113 73 104 chr9 31110152 31110294 -111161150 + L1MA9 LINE L1 5975 6104 -196 26 30 0 0 chr9 31110525 31110558 -111160886 + AT_rich Low_complexity Low_complexity 1 33 0 2192 110 0 0 chr9 31110699 31110991 -111160453 + AluSc SINE Alu 1 292 -17 902 252 87 33 chr9 31111155 31111679 -111159765 - L1ME LINE L1 -389 5773 5214 240 286 48 0 chr9 31113091 31113154 -111158290 + L2 LINE L2 3201 3266 -6 698 348 159 21 chr9 31113902 31114885 -111156559 + L3 LINE CR1 76 1193 -384 230 270 79 11 chr9 31115267 31115356 -111156088 + L3 LINE CR1 1452 1546 -31 2638 154 66 16 chr9 31115627 31115948 -111155496 + MER41E LTR ERV1 1 357 -155 2023 117 4 0 chr9 31115948 31116253 -111155191 - AluSp SINE Alu 0 306 1 2638 154 66 16 chr9 31116253 31116418 -111155026 + MER41E LTR ERV1 357 512 0 397 321 130 40 chr9 31116570 31116969 -111154475 + L2 LINE L2 2863 3297 -16 380 314 17 46 chr9 31117650 31117825 -111153619 - MIR SINE MIR -92 170 1 499 223 13 107 chr9 31118516 31118704 -111152740 + MER63A DNA MER1_type 39 210 0 536 165 0 0 chr9 31119138 31119223 -111152221 - AluSg/x SINE Alu -39 270 186 309 296 75 75 chr9 31119544 31119730 -111151714 + MIR3 SINE MIR 23 208 0 1264 237 19 24 chr9 31120008 31120383 -111151061 + MLT1A2 LTR MaLR 1 467 0 263 210 80 70 chr9 31120931 31121031 -111150413 - MIR SINE MIR 0 262 162 414 279 29 15 chr9 31121088 31121224 -111150220 - MIR SINE MIR -105 157 20 238 378 61 65 chr9 31121224 31121502 -111149942 + L2 LINE L2 2990 3266 -6 25 51 0 0 chr9 31121685 31121724 -111149720 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr9 31122930 31122965 -111148479 + AT_rich Low_complexity Low_complexity 1 35 0 1067 251 28 3 chr9 31123821 31124112 -111147332 - L1MA9 LINE L1 -39 6273 5976 563 200 8 8 chr9 31124110 31124240 -111147204 + L1MA9 LINE L1 5816 5945 -367 * 952 243 60 71 chr9 31125117 31125266 -111146178 - LTR16A1 LTR ERVL 0 457 308 1100 156 45 0 chr9 31125266 31125445 -111145999 + MER5A DNA MER1_type 3 189 0 952 243 60 71 chr9 31125445 31125661 -111145783 - LTR16A1 LTR ERVL -149 308 96 28 0 0 0 chr9 31127428 31127456 -111143988 + AT_rich Low_complexity Low_complexity 1 28 0 1967 210 32 0 chr9 31128264 31128668 -111142776 + L1PA16 LINE L1 5740 6156 -10 582 330 89 69 chr9 31129664 31130312 -111141132 + MLT2F LTR ERVL 3 663 0 264 59 0 0 chr9 31130721 31130755 -111140689 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3131 299 33 18 chr9 31131138 31132163 -111139281 + ERVL-F LTR ERVL 3242 4282 -1482 260 245 142 9 chr9 31132260 31132366 -111139078 + ERVL-F LTR ERVL 5630 5749 -15 316 292 52 0 chr9 31132374 31132470 -111138974 + MLT2F LTR ERVL 4 104 -524 1277 116 0 0 chr9 31132488 31132660 -111138784 + AluSg/x SINE Alu 129 300 -10 909 276 148 30 chr9 31132707 31133141 -111138303 + MLT2F LTR ERVL 179 663 0 345 48 63 16 chr9 31134052 31134115 -111137329 + GA-rich Low_complexity Low_complexity 4 69 0 1218 54 0 7 chr9 31135016 31135189 -111136255 + AluY SINE Alu 144 315 0 183 331 113 33 chr9 31135474 31135625 -111135819 + MIR3 SINE MIR 16 178 -30 673 279 40 87 chr9 31136983 31137305 -111134139 + LTR16B LTR ERVL 3 309 -155 372 333 26 16 chr9 31137914 31138106 -111133338 + L3 LINE CR1 1207 1400 -177 237 125 54 0 chr9 31138714 31138770 -111132674 + (TA)n Simple_repeat Simple_repeat 1 59 0 1997 122 27 61 chr9 31138861 31139237 -111132207 + L1PA16 LINE L1 5801 6163 -3 345 24 0 0 chr9 31139638 31139680 -111131764 + (CA)n Simple_repeat Simple_repeat 2 43 0 333 300 94 12 chr9 31141242 31141402 -111130042 - MLT1L LTR MaLR -301 314 142 832 331 83 2 chr9 31142281 31142689 -111128755 - LTR16A LTR ERVL -2 448 8 2036 336 71 52 chr9 31142966 31145108 -111126336 - MERVL LTR ERVL -664 4821 2721 297 0 0 0 chr9 31145108 31145141 -111126303 + (CA)n Simple_repeat Simple_repeat 2 34 0 2036 336 71 52 chr9 31145141 31145159 -111126285 - MERVL LTR ERVL -2764 2721 2705 270 81 0 0 chr9 31145159 31145196 -111126248 + (TG)n Simple_repeat Simple_repeat 1 37 0 2036 336 71 52 chr9 31145196 31145479 -111125965 - MERVL LTR ERVL -2780 2705 2331 369 301 29 40 chr9 31145546 31145719 -111125725 - MERVL LTR ERVL -2762 2234 2064 428 347 43 20 chr9 31145737 31146037 -111125407 - MERVL LTR ERVL -3493 2161 1855 317 269 32 0 chr9 31146079 31146172 -111125272 - MERVL LTR ERVL -3214 1782 1687 2379 312 49 52 chr9 31146198 31147497 -111123947 - MERVL LTR ERVL -3426 1570 276 248 330 71 0 chr9 31147923 31148035 -111123409 - LTR16A LTR ERVL -322 128 9 216 0 0 0 chr9 31148481 31148505 -111122939 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 226 274 0 32 chr9 31148832 31148894 -111122550 - L2 LINE L2 -32 3281 3222 33 25 0 0 chr9 31150111 31150151 -111121293 + AT_rich Low_complexity Low_complexity 1 40 0 13520 141 43 7 chr9 31150369 31152698 -111118746 + Tigger1 DNA MER2_type 1 2414 -4 207 246 14 72 chr9 31153125 31153194 -111118250 + MIR3 SINE MIR 92 156 -52 327 203 0 0 chr9 31154251 31154325 -111117119 + (TA)n Simple_repeat Simple_repeat 1 74 0 340 324 176 11 chr9 31154436 31154708 -111116736 + L1ME3A LINE L1 4742 5058 -1088 1140 288 60 21 chr9 31154716 31155403 -111116041 + L1ME3A LINE L1 5114 5833 -337 21 57 0 0 chr9 31155484 31155519 -111115925 + AT_rich Low_complexity Low_complexity 1 35 0 42449 55 4 0 chr9 31155908 31162036 -111109408 + L1PA5 LINE L1 3 6154 0 530 303 50 50 chr9 31162762 31162980 -111108464 + MIR SINE MIR 2 219 -43 6750 186 28 46 chr9 31163656 31165170 -111106274 - L1P4 LINE L1 -642 5524 4061 1638 206 3 0 chr9 31165170 31165462 -111105982 - AluJb SINE Alu -17 295 3 6750 186 28 46 chr9 31165462 31165809 -111105635 - L1P4 LINE L1 -2105 4061 3709 3700 136 25 2 chr9 31165809 31166404 -111105040 + L1PA16 LINE L1 5555 6163 -3 638 249 56 42 chr9 31167250 31167463 -111103981 - MER20 DNA MER1_type -3 216 1 196 402 22 0 chr9 31168415 31168507 -111102937 + MIR3 SINE MIR 69 162 -46 250 347 127 20 chr9 31169821 31169971 -111101473 + MIR3 SINE MIR 18 183 -25 2135 172 85 7 chr9 31170122 31170558 -111100886 + MLT2B1 LTR ERVL 1 470 -50 2541 153 13 22 chr9 31170559 31171009 -111100435 - Tigger2 DNA MER2_type 0 2718 2273 335 232 0 0 chr9 31170999 31171068 -111100376 - Tigger2 DNA MER2_type -2649 69 1 * 316 258 0 17 chr9 31171069 31171189 -111100255 + (TA)n Simple_repeat Simple_repeat 2 119 0 278 122 0 0 chr9 31171197 31171238 -111100206 + MLT2B1 LTR ERVL 475 515 -5 555 234 82 35 chr9 31171559 31171730 -111099714 + LTR41 LTR ERVL 1 179 -594 307 77 77 11 chr9 31172426 31172517 -111098927 + (TA)n Simple_repeat Simple_repeat 1 97 0 989 158 0 0 chr9 31172518 31172664 -111098780 - FRAM SINE Alu -23 153 8 763 268 45 32 chr9 31172998 31173375 -111098069 - L1M4 LINE L1 -798 5348 4967 795 176 0 0 chr9 31173852 31173971 -111097473 + FLAM_C SINE Alu 1 119 -14 356 198 0 12 chr9 31173978 31174064 -111097380 + (TG)n Simple_repeat Simple_repeat 1 85 0 551 224 151 23 chr9 31174262 31174566 -111096878 + L1M4 LINE L1 4264 4606 -1540 489 172 0 0 chr9 31174645 31174738 -111096706 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 951 215 39 5 chr9 31174771 31174976 -111096468 - MER20 DNA MER1_type -7 212 1 2340 149 20 2 chr9 31175037 31175433 -111096011 - MER57A LTR ERV1 0 403 1 429 320 51 11 chr9 31175706 31175884 -111095560 + LTR16C LTR ERVL 307 491 0 26 50 0 0 chr9 31176142 31176182 -111095262 + AT_rich Low_complexity Low_complexity 1 40 0 332 373 79 18 chr9 31176183 31176513 -111094931 + L2 LINE L2 1738 2087 -1227 221 311 14 14 chr9 31177059 31177133 -111094311 - L2 LINE L2 -47 3225 3152 1104 158 93 23 chr9 31177178 31177254 -111094190 - L1MA9 LINE L1 -70 6242 6173 246 95 0 0 chr9 31177254 31177296 -111094148 + (TG)n Simple_repeat Simple_repeat 2 43 0 1104 158 93 23 chr9 31177296 31177478 -111093966 - L1MA9 LINE L1 -139 6173 5966 982 231 21 4 chr9 31177486 31177767 -111093677 - L1 LINE L1 -2649 3497 3212 665 149 0 0 chr9 31177784 31177905 -111093539 - L1PA15 LINE L1 -4 6161 6041 3880 18 0 0 chr9 31177907 31178352 -111093092 - L1PA3 LINE L1 0 6155 5711 4663 154 69 2 chr9 31178360 31179282 -111092162 - L1PA15 LINE L1 -133 6032 5039 299 190 100 0 chr9 31179277 31179377 -111092067 - L1 LINE L1 -2932 3214 3105 * 3050 264 49 21 chr9 31179376 31180322 -111091122 + L1M1 LINE L1 2814 3822 -3743 1815 178 0 3 chr9 31180322 31180614 -111090830 + AluSx SINE Alu 14 304 -8 3050 264 49 21 chr9 31180614 31181315 -111090129 + L1M1 LINE L1 3822 4502 -3063 230 348 42 42 chr9 31181638 31181756 -111089688 + MIR SINE MIR 12 129 -133 2015 194 34 12 chr9 31181847 31182260 -111089184 + MSTB LTR MaLR 5 426 0 229 328 0 0 chr9 31182512 31182576 -111088868 + MIR SINE MIR 82 145 -63 210 239 185 24 chr9 31182729 31182845 -111088599 - MIR SINE MIR -67 141 16 505 0 31 0 chr9 31183036 31183101 -111088343 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 238 288 207 0 chr9 31183711 31183822 -111087622 + MIR SINE MIR 57 190 -72 275 335 6 37 chr9 31184508 31184669 -111086775 - L2 LINE L2 -715 2599 2444 424 330 95 6 chr9 31184795 31184974 -111086470 - MIR SINE MIR -67 195 1 191 340 126 29 chr9 31184979 31185217 -111086227 + L3b LINE CR1 1152 1412 -171 340 254 53 44 chr9 31185506 31185544 -111085900 + L1ME4a LINE L1 5323 5359 -762 2338 104 0 0 chr9 31185544 31185853 -111085591 + AluSc SINE Alu 1 309 0 340 254 53 44 chr9 31185853 31185928 -111085516 + L1ME4a LINE L1 5359 5437 -684 1330 241 0 0 chr9 31185969 31186235 -111085209 - AluJb SINE Alu -42 270 5 422 281 48 0 chr9 31186366 31186512 -111084932 - MIR SINE MIR 0 262 110 447 225 115 54 chr9 31186584 31186775 -111084669 + L1ME4a LINE L1 5586 5758 -363 6190 93 19 6 chr9 31186781 31187935 -111083509 + L1PA10 LINE L1 4998 6168 0 301 329 91 13 chr9 31187938 31188169 -111083275 + L1ME4a LINE L1 5827 6075 -46 600 284 41 6 chr9 31189209 31189378 -111082066 + MIR SINE MIR 23 197 -65 1833 126 201 6 chr9 31189549 31189907 -111081537 - MSTA LTR MaLR 0 428 1 437 286 54 49 chr9 31190328 31190384 -111081060 + MIR SINE MIR 37 91 -171 1920 133 67 25 chr9 31190384 31190744 -111080700 - THE1C LTR MaLR 0 375 1 437 286 54 49 chr9 31190744 31190911 -111080533 + MIR SINE MIR 91 261 -1 388 257 105 41 chr9 31191542 31191713 -111079731 - LTR16A LTR ERVL -12 438 257 6967 14 0 0 chr9 31191714 31192508 -111078936 + L1PA2 LINE L1 5360 6153 -2 225 0 0 0 chr9 31192522 31192547 -111078897 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr9 31192565 31192590 -111078854 + AT_rich Low_complexity Low_complexity 1 25 0 683 332 29 4 chr9 31192590 31192831 -111078613 - LTR16A LTR ERVL -196 254 8 26 0 0 0 chr9 31193766 31193792 -111077652 + AT_rich Low_complexity Low_complexity 1 26 0 1943 139 27 35 chr9 31193847 31194221 -111077223 - THE1C LTR MaLR -4 371 1 35 41 0 0 chr9 31195495 31195544 -111075900 + AT_rich Low_complexity Low_complexity 1 49 0 261 102 114 114 chr9 31196627 31196715 -111074729 - MER69 DNA AcHobo -14 2512 2425 239 269 148 108 chr9 31196968 31197347 -111074097 + L2 LINE L2 2920 3313 0 254 292 131 62 chr9 31197397 31197527 -111073917 - MIR3 SINE MIR -40 168 30 388 125 0 115 chr9 31197653 31197757 -111073687 - MER69 DNA AcHobo -14 2512 2421 783 286 64 35 chr9 31197765 31197869 -111073575 - MER69 DNA AcHobo -841 385 286 1700 147 22 0 chr9 31197869 31197991 -111073453 + AluSx SINE Alu 2 120 -192 353 58 19 0 chr9 31197991 31198043 -111073401 + (CA)n Simple_repeat Simple_repeat 2 54 0 1700 147 22 0 chr9 31198043 31198192 -111073252 + AluSx SINE Alu 120 279 -33 450 0 0 0 chr9 31198192 31198242 -111073202 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 783 286 64 35 chr9 31198242 31198510 -111072934 - MER69 DNA AcHobo -939 287 1 503 322 28 6 chr9 31199143 31199320 -111072124 + MIR SINE MIR 23 203 -59 202 340 38 28 chr9 31199471 31199577 -111071867 + L2 LINE L2 3153 3259 -13 21 0 0 0 chr9 31199670 31199691 -111071753 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 31200615 31200636 -111070808 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 31200934 31200966 -111070478 + AT_rich Low_complexity Low_complexity 1 32 0 221 0 0 33 chr9 31202238 31202268 -111069176 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 238 49 24 24 chr9 31202712 31202753 -111068691 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr9 31203875 31203897 -111067547 + AT_rich Low_complexity Low_complexity 1 22 0 220 301 49 73 chr9 31205360 31205483 -111065961 - MER5A DNA MER1_type -1 188 69 304 293 12 0 chr9 31206206 31206288 -111065156 - MIR3 SINE MIR -14 194 112 255 235 0 15 chr9 31207424 31207492 -111063952 + MLT1L LTR MaLR 547 613 -2 1368 228 5 76 chr9 31208492 31208887 -111062557 - MLT1A2 LTR MaLR 0 374 8 2337 55 3 0 chr9 31209293 31209584 -111061860 + AluY SINE Alu 1 292 -19 503 279 81 17 chr9 31209890 31210062 -111061382 - MIR SINE MIR -44 218 36 409 224 0 0 chr9 31211587 31211672 -111059772 + MER67D LTR ERV1 1 85 -429 * 1630 210 47 49 chr9 31211655 31212190 -111059254 + MER67C LTR ERV1 12 511 -3 458 263 53 53 chr9 31212198 31212499 -111058945 - L1ME LINE L1 -613 5557 5257 1545 188 7 0 chr9 31212690 31212962 -111058482 - AluJo SINE Alu -26 286 13 288 268 12 0 chr9 31213338 31213420 -111058024 + (TA)n Simple_repeat Simple_repeat 2 84 0 395 233 80 52 chr9 31213467 31213716 -111057728 + L1MC5 LINE L1 7416 7671 -290 2279 96 36 183 chr9 31213716 31214247 -111057197 + MLT2A2 LTR ERVL 1 453 0 2805 60 3 16 chr9 31214275 31214655 -111056789 - L1PA8 LINE L1 -6 6166 5792 1168 35 7 0 chr9 31214655 31214800 -111056644 + L1PA8 LINE L1 5621 5766 -406 1030 174 32 28 chr9 31214797 31215050 -111056394 + L1MC5 LINE L1 7676 7929 -32 * 335 294 17 25 chr9 31215209 31215328 -111056116 - MLT1H LTR MaLR -6 543 426 270 126 0 200 chr9 31215818 31215913 -111055531 - MLT1-int LTR MaLR -208 1163 1088 360 288 77 12 chr9 31215990 31216160 -111055284 + MER58C DNA MER1_type 3 183 -32 235 118 0 78 chr9 31216373 31216424 -111055020 - MLT1-int LTR MaLR -502 869 823 286 243 0 14 chr9 31216994 31217068 -111054376 - MLT1-int LTR MaLR -1662 73 1 3307 175 28 58 chr9 31217876 31218125 -111053319 - MER44D DNA MER2_type -1882 705 450 2017 110 20 10 chr9 31218125 31218417 -111053027 - AluSx SINE Alu -17 295 1 3307 175 28 58 chr9 31218417 31218894 -111052550 - MER44D DNA MER2_type -2137 450 1 569 298 82 37 chr9 31219126 31219371 -111052073 - MIR SINE MIR -1 261 6 21 0 0 0 chr9 31219727 31219748 -111051696 + AT_rich Low_complexity Low_complexity 1 21 0 5301 147 15 65 chr9 31219748 31221031 -111050413 + L1MA6 LINE L1 5065 6299 -1 22 0 0 0 chr9 31221032 31221054 -111050390 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr9 31221821 31221852 -111049592 + AT_rich Low_complexity Low_complexity 1 31 0 438 341 39 0 chr9 31222181 31222363 -111049081 + MIR SINE MIR 48 236 -26 1905 177 17 8 chr9 31222565 31222921 -111048523 + Tigger3(Golem) DNA MER2_type 2 2157 -872 2499 267 111 31 chr9 31222923 31224177 -111047267 - L1M4 LINE L1 -2023 4123 2743 1547 209 11 0 chr9 31224177 31224478 -111046966 - AluJb SINE Alu 0 306 3 2499 267 111 31 chr9 31224478 31224624 -111046820 - L1M4 LINE L1 -3403 2743 2610 408 245 89 118 chr9 31226132 31226303 -111045141 - HAL1b LINE L1 -317 1031 856 207 0 0 0 chr9 31226303 31226326 -111045118 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1912 112 4 0 chr9 31226331 31226607 -111044837 - AluSg SINE Alu -33 277 1 2268 68 14 0 chr9 31226616 31226908 -111044536 - AluY SINE Alu -15 296 1 408 245 89 118 chr9 31226908 31227092 -111044352 - HAL1b LINE L1 -504 844 671 926 160 17 52 chr9 31227121 31227169 -111044275 - L1MD1 LINE L1 -1 6241 6193 2108 119 0 3 chr9 31227169 31227462 -111043982 - AluSx SINE Alu -20 292 1 926 160 17 52 chr9 31227462 31227644 -111043800 - L1MD1 LINE L1 -49 6193 6019 431 186 153 0 chr9 31227646 31227770 -111043674 - L1MD1 LINE L1 -168 6074 5932 3333 127 41 2 chr9 31227888 31228423 -111043021 - L1PB2 LINE L1 0 6151 5596 927 139 65 46 chr9 31228433 31228649 -111042795 - L1MD2 LINE L1 -3 6356 6137 438 69 0 0 chr9 31228654 31228712 -111042732 + (TA)n Simple_repeat Simple_repeat 1 58 0 3359 226 66 14 chr9 31228754 31229691 -111041753 - L1MDa LINE L1 -4887 1653 668 2524 175 83 20 chr9 31230137 31230691 -111040753 - L1MC3 LINE L1 -6 7779 7191 237 300 10 30 chr9 31230735 31230835 -111040609 - MLT1F1 LTR MaLR -457 110 13 273 197 13 0 chr9 31230847 31230923 -111040521 - L1MC3 LINE L1 -739 7046 6970 509 152 9 27 chr9 31231366 31231478 -111039966 - L1 LINE L1 -1656 4490 4381 22 0 0 0 chr9 31232193 31232215 -111039229 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 31232484 31232505 -111038939 + AT_rich Low_complexity Low_complexity 1 21 0 256 330 19 0 chr9 31232607 31232710 -111038734 + CT-rich Low_complexity Low_complexity 2 106 0 275 363 149 40 chr9 31232761 31233552 -111037892 + L3 LINE CR1 700 1576 -1 1673 200 116 35 chr9 31234791 31235255 -111036189 + MLT1D LTR MaLR 1 502 -3 1558 226 48 97 chr9 31235553 31236185 -111035259 - LTR38B LTR ERV1 0 610 10 1934 214 88 39 chr9 31236267 31236780 -111034664 + L1MDa LINE L1 21 558 -5982 234 0 0 0 chr9 31236780 31236806 -111034638 + (CCA)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr9 31236852 31236873 -111034571 + (A)n Simple_repeat Simple_repeat 1 21 0 330 316 43 38 chr9 31237139 31237348 -111034096 + HAL1b LINE L1 464 673 -675 1841 58 0 0 chr9 31237396 31237620 -111033824 + AluY SINE Alu 80 303 -8 445 158 40 0 chr9 31237662 31237738 -111033706 + MER63 DNA MER1_type 672 750 -86 1791 225 59 102 chr9 31237739 31238349 -111033095 + L1MC5 LINE L1 6873 7408 -553 766 101 0 31 chr9 31238349 31238478 -111032966 - L1PA10 LINE L1 0 6168 6044 1791 225 59 102 chr9 31238478 31238923 -111032521 + L1MC5 LINE L1 7408 7871 -90 596 338 73 13 chr9 31239815 31240425 -111031019 - L1ME3A LINE L1 -235 5935 5295 19980 101 23 12 chr9 31240466 31244358 -111027086 - L1PA8 LINE L1 -22 6150 2215 6034 129 44 17 chr9 31244361 31245345 -111026099 + L1P3 LINE L1 346 1355 -5442 5438 139 10 2 chr9 31245350 31246274 -111025170 + L1P3 LINE L1 1849 2828 -3969 382 298 49 18 chr9 31246268 31246597 -111024847 - L1ME3A LINE L1 -839 5307 4969 * 340 281 77 53 chr9 31246624 31247001 -111024443 - L1ME3A LINE L1 -1353 4793 4408 1089 158 0 0 chr9 31247046 31247211 -111024233 - AluSg/x SINE Alu -17 295 131 517 309 52 14 chr9 31247373 31247664 -111023780 - L1ME3A LINE L1 -1949 4197 3896 436 329 44 51 chr9 31247682 31247998 -111023446 - L1ME3A LINE L1 -2392 3754 3441 23 0 0 0 chr9 31248262 31248285 -111023159 + AT_rich Low_complexity Low_complexity 1 23 0 965 296 43 40 chr9 31248540 31248962 -111022482 + LTR16C LTR ERVL 59 481 -10 270 333 22 0 chr9 31250490 31250580 -111020864 + MIR SINE MIR 53 144 -118 315 322 132 48 chr9 31251521 31251878 -111019566 - L2 LINE L2 -8 3305 2919 2083 66 4 0 chr9 31252086 31252359 -111019085 + L1PA3 LINE L1 5882 6155 0 299 276 78 0 chr9 31252405 31252521 -111018923 + Charlie8 DNA MER1_type 98 222 -2195 371 276 57 86 chr9 31252858 31253173 -111018271 - L2 LINE L2 -821 2493 2188 180 356 125 0 chr9 31253377 31253537 -111017907 - L2 LINE L2 -1283 2031 1852 1089 340 88 38 chr9 31253930 31254769 -111016675 - L3 LINE CR1 -206 1371 491 195 353 49 33 chr9 31254832 31254954 -111016490 - L3 LINE CR1 -1188 389 266 4558 51 0 2 chr9 31255298 31255862 -111015582 - L1PA7 LINE L1 -4 6150 5588 215 320 107 0 chr9 31256431 31256506 -111014938 - L2 LINE L2 0 3272 3190 180 0 0 0 chr9 31256964 31256984 -111014460 + (TA)n Simple_repeat Simple_repeat 2 21 0 2163 101 7 0 chr9 31256984 31257281 -111014163 - AluY SINE Alu -12 299 1 674 382 74 32 chr9 31257464 31258184 -111013260 + L2 LINE L2 2216 2965 -349 658 75 9 9 chr9 31259208 31259315 -111012129 + (TA)n Simple_repeat Simple_repeat 1 107 0 291 54 0 0 chr9 31259314 31259351 -111012093 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 356 297 23 57 chr9 31259597 31259772 -111011672 - MIR SINE MIR -74 188 20 660 298 77 77 chr9 31259883 31260097 -111011347 - L2 LINE L2 -35 3278 3066 632 177 20 7 chr9 31260097 31260244 -111011200 + L1MA8 LINE L1 6139 6287 -4 660 298 77 77 chr9 31260244 31260781 -111010663 - L2 LINE L2 -247 3066 2528 181 313 133 23 chr9 31261332 31261460 -111009984 - MIR SINE MIR -64 198 57 30 59 0 0 chr9 31261850 31261901 -111009543 + AT_rich Low_complexity Low_complexity 1 51 0 385 217 63 82 chr9 31262601 31262808 -111008636 + L1MDa LINE L1 2420 2622 -3918 1470 214 158 21 chr9 31262808 31263008 -111008436 + LTR2B LTR ERV1 1 172 -318 321 26 0 0 chr9 31263008 31263046 -111008398 + (TTCTG)n Simple_repeat Simple_repeat 1 38 0 1470 214 158 21 chr9 31263046 31263276 -111008168 + LTR2B LTR ERV1 172 490 0 36893 60 21 15 chr9 31263276 31268138 -111003306 + Harlequin LTR ERV1 1 4895 -2001 14039 63 4 1 chr9 31268126 31269909 -111001535 + Harlequin LTR ERV1 5109 6896 0 * 1874 196 94 26 chr9 31269909 31270368 -111001076 + LTR2B LTR ERV1 1 490 0 1062 284 83 23 chr9 31270375 31270516 -111000928 + L1MDa LINE L1 2624 2755 -3785 5618 56 7 12 chr9 31270516 31271252 -111000192 + L1PA7 LINE L1 5420 6151 -3 1062 284 83 23 chr9 31271252 31271667 -110999777 + L1MDa LINE L1 2755 3213 -3327 * 1230 241 20 3 chr9 31271665 31272006 -110999438 - L1M4 LINE L1 -2135 4011 3665 485 257 16 11 chr9 31272015 31272198 -110999246 - L1M4 LINE L1 -2526 3620 3437 935 253 89 14 chr9 31272316 31273200 -110998244 - L1M4 LINE L1 -2892 3254 2124 881 190 60 74 chr9 31273210 31273479 -110997965 - L1MA9 LINE L1 -38 6274 6010 1298 203 61 0 chr9 31273480 31273775 -110997669 - L1M4 LINE L1 -501 5683 5371 966 239 67 21 chr9 31273771 31274144 -110997300 - L1M4 LINE L1 -2557 3589 3200 * 599 169 59 15 chr9 31274153 31274289 -110997155 - L1MA8 LINE L1 -4 6287 6146 839 115 46 0 chr9 31274289 31274419 -110997025 - L1M2 LINE L1 -662 5629 5494 956 216 69 4 chr9 31274420 31274651 -110996793 - AluJb SINE Alu -3 309 64 4191 152 41 3 chr9 31274707 31275396 -110996048 - LTR62 LTR ERVK -4 715 1 1140 185 39 0 chr9 31275399 31275658 -110995786 - L1M2 LINE L1 -778 5368 5100 3445 218 58 54 chr9 31275680 31276405 -110995039 - MER21B LTR ERV1 -19 844 113 2170 152 45 36 chr9 31276405 31276826 -110994618 - MER61B LTR ERV1 0 425 1 3445 218 58 54 chr9 31276826 31276940 -110994504 - MER21B LTR ERV1 -750 113 1 2191 175 29 18 chr9 31276940 31277391 -110994053 - L1M2 LINE L1 -1042 5104 4649 1018 181 0 36 chr9 31277377 31277570 -110993874 + L1MA9 LINE L1 5608 5793 -519 * 2676 152 57 0 chr9 31277625 31278133 -110993311 + L1MA9 LINE L1 5776 6312 0 4930 230 38 60 chr9 31278136 31279256 -110992188 + L1MD1 LINE L1 3202 4345 -1897 1593 125 34 19 chr9 31279256 31279520 -110991924 + AluY SINE Alu 39 306 -5 4930 230 38 60 chr9 31279520 31281466 -110989978 + L1MD1 LINE L1 4345 6231 -11 1923 204 114 14 chr9 31281651 31282088 -110989356 - MLT1D LTR MaLR -3 502 22 2091 78 0 17 chr9 31283441 31283736 -110987708 + AluY SINE Alu 21 310 -1 22 0 0 0 chr9 31284047 31284069 -110987375 + AT_rich Low_complexity Low_complexity 1 22 0 2233 48 41 7 chr9 31284251 31284542 -110986902 - AluY SINE Alu -10 301 1 189 147 0 0 chr9 31285084 31285118 -110986326 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 211 423 0 10 chr9 31285688 31285792 -110985652 + L3 LINE CR1 1462 1564 -13 5429 123 25 1 chr9 31286043 31287158 -110984286 + L1PA16 LINE L1 5021 6157 -9 23 54 0 0 chr9 31287163 31287200 -110984244 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr9 31288508 31288536 -110982908 + AT_rich Low_complexity Low_complexity 1 28 0 887 187 126 16 chr9 31289471 31289717 -110981727 - ORSL DNA AcHobo -1 274 2 523 285 25 43 chr9 31291166 31291443 -110980001 - L1M4 LINE L1 -1992 4154 3883 254 253 55 22 chr9 31291672 31291763 -110979681 - L1MC4 LINE L1 -26 8016 7923 2709 181 19 91 chr9 31292094 31292811 -110978633 - L1MD2 LINE L1 -10 6349 5684 294 29 0 0 chr9 31292811 31292846 -110978598 + (TG)n Simple_repeat Simple_repeat 1 35 0 214 273 118 50 chr9 31292857 31293018 -110978426 + L2 LINE L2 1609 1780 -1534 246 326 76 42 chr9 31293427 31293571 -110977873 - MIR SINE MIR -65 197 49 370 292 28 101 chr9 31296533 31296711 -110974733 + MIR SINE MIR 70 234 -28 319 340 26 21 chr9 31297292 31297483 -110973961 - MLT1L LTR MaLR -10 605 414 183 80 0 0 chr9 31297566 31297591 -110973853 + (T)n Simple_repeat Simple_repeat 1 25 0 34 42 0 0 chr9 31299238 31299286 -110972158 + AT_rich Low_complexity Low_complexity 1 48 0 787 179 0 15 chr9 31299286 31299420 -110972024 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr9 31299903 31299924 -110971520 + AT_rich Low_complexity Low_complexity 1 21 0 247 333 142 7 chr9 31300021 31300162 -110971282 + MIR SINE MIR 21 180 -82 21 0 0 0 chr9 31300975 31300996 -110970448 + AT_rich Low_complexity Low_complexity 1 21 0 373 299 75 63 chr9 31301052 31301306 -110970138 + L3b LINE CR1 1109 1365 -218 250 287 73 12 chr9 31301984 31302148 -110969296 - L1MC/D LINE L1 -1907 5901 5728 967 71 49 13 chr9 31303170 31303395 -110968049 + CT-rich Low_complexity Low_complexity 1 233 0 552 240 175 39 chr9 31304116 31304424 -110967020 + Charlie2 DNA MER1_type 72 421 -2441 1368 228 11 39 chr9 31304467 31304826 -110966618 - L1MA10 LINE L1 -7 6327 5979 324 235 0 82 chr9 31304834 31304932 -110966512 - L1MC4 LINE L1 -1339 6703 6614 364 182 26 0 chr9 31304954 31305031 -110966413 - L1MA10 LINE L1 -384 5928 5850 1129 246 41 15 chr9 31305044 31305758 -110965686 + L1M1 LINE L1 3029 3770 -3795 725 149 101 120 chr9 31305850 31306058 -110965386 + MER20 DNA MER1_type 16 219 0 839 320 21 42 chr9 31306274 31306652 -110964792 + L2 LINE L2 2943 3312 -1 342 337 63 6 chr9 31307563 31307738 -110963706 + MIR SINE MIR 1 185 -77 736 87 96 0 chr9 31307840 31307955 -110963489 - L1PA10 LINE L1 -4 6164 6039 195 42 0 0 chr9 31308665 31308689 -110962755 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 29 70 0 0 chr9 31310717 31310774 -110960670 + AT_rich Low_complexity Low_complexity 1 57 0 750 303 70 34 chr9 31311731 31312619 -110958825 + L1MEc LINE L1 837 1756 -4640 5256 80 1 3 chr9 31312709 31313421 -110958023 - L1PA7 LINE L1 -1445 4701 3991 6709 64 4 19 chr9 31313422 31314880 -110956564 + L1PA7 LINE L1 4700 6146 -8 904 161 13 7 chr9 31314895 31315050 -110956394 + AluSg/x SINE Alu 153 308 -4 1040 284 59 59 chr9 31315086 31316078 -110955366 + L1MEc LINE L1 1908 2877 -3338 4933 177 28 32 chr9 31316081 31317468 -110953976 - L1MA9 LINE L1 -35 6277 4903 498 197 102 7 chr9 31317589 31317726 -110953718 - L1MA9 LINE L1 -1252 4894 4745 6610 110 25 30 chr9 31317740 31318803 -110952641 - L1MA1 LINE L1 -4 6298 5243 2194 127 21 29 chr9 31318803 31319181 -110952263 - THE1C LTR MaLR 0 375 1 6610 110 25 30 chr9 31319181 31319247 -110952197 - L1MA1 LINE L1 -1059 5243 5178 929 202 299 8 chr9 31319249 31319610 -110951834 - L1MA9 LINE L1 -1386 4760 4295 660 253 64 7 chr9 31319614 31319895 -110951549 + L1MEc LINE L1 2873 3169 -3046 1427 217 18 0 chr9 31320291 31320567 -110950877 + AluJo SINE Alu 2 282 -30 1940 143 11 49 chr9 31320723 31321073 -110950371 - MER1B DNA MER1_type 0 337 1 377 338 43 0 chr9 31322913 31323052 -110948392 + MIR SINE MIR 111 255 -7 2013 108 7 0 chr9 31324042 31324321 -110947123 + AluSp SINE Alu 1 281 -32 189 0 0 0 chr9 31324321 31324342 -110947102 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2542 188 5 68 chr9 31326217 31326808 -110944636 + MER41C LTR ERV1 1 554 0 1071 287 39 48 chr9 31327178 31327238 -110944206 - LTR16B LTR ERVL 0 464 405 1877 149 0 17 chr9 31327238 31327540 -110943904 + AluJb SINE Alu 1 297 -15 1071 287 39 48 chr9 31327540 31327942 -110943502 - LTR16B LTR ERVL -59 405 6 644 185 34 7 chr9 31328400 31328546 -110942898 - L1MA1 LINE L1 -1479 4667 4518 237 251 74 37 chr9 31328558 31328721 -110942723 - L1MC5 LINE L1 -65 7896 7728 248 385 83 15 chr9 31328926 31329131 -110942313 + MIR SINE MIR 11 229 -33 4035 203 52 41 chr9 31329499 31330054 -110941390 + L1MB7 LINE L1 4615 5162 -1022 1949 162 65 29 chr9 31330054 31330467 -110940977 + MSTA LTR MaLR 1 428 0 4035 203 52 41 chr9 31330467 31331453 -110939991 + L1MB7 LINE L1 5162 6177 -7 655 268 56 9 chr9 31331746 31331959 -110939485 - MER58A DNA MER1_type -1 223 1 1917 117 3 3 chr9 31332245 31332550 -110938894 - AluSx SINE Alu 0 305 1 22 0 0 0 chr9 31333036 31333058 -110938386 + AT_rich Low_complexity Low_complexity 1 22 0 345 343 191 22 chr9 31334652 31334980 -110936464 + L2 LINE L2 2764 3035 -278 246 105 0 0 chr9 31334980 31335018 -110936426 + (TG)n Simple_repeat Simple_repeat 1 38 0 345 343 191 22 chr9 31335018 31335160 -110936284 + L2 LINE L2 3035 3313 0 489 346 71 31 chr9 31335451 31335999 -110935445 + L2 LINE L2 2660 3232 -81 238 250 0 15 chr9 31336013 31336081 -110935363 + MIR SINE MIR 94 160 -102 42739 40 1 30 chr9 31336083 31342427 -110929017 + L1PA3 LINE L1 2 6155 0 290 304 0 0 chr9 31342428 31342520 -110928924 + MIR SINE MIR 157 248 -14 276 30 0 0 chr9 31342545 31342578 -110928866 + (CAT)n Simple_repeat Simple_repeat 2 34 0 730 276 18 9 chr9 31342668 31342885 -110928559 - MLT1G LTR MaLR -6 584 366 273 29 0 0 chr9 31343830 31343864 -110927580 + (CA)n Simple_repeat Simple_repeat 1 34 0 356 281 154 23 chr9 31343891 31344112 -110927332 + L1ME4a LINE L1 5831 6080 -41 5930 153 12 2 chr9 31344130 31345695 -110925749 - L1PB1 LINE L1 -7 6144 4564 7825 163 11 4 chr9 31345702 31346381 -110925063 - L1PA13 LINE L1 0 6163 5490 1992 140 10 0 chr9 31346381 31346673 -110924771 - AluSx SINE Alu -17 295 1 7825 163 11 4 chr9 31346673 31348226 -110923218 - L1PA13 LINE L1 -673 5490 3908 857 321 90 24 chr9 31348244 31348668 -110922776 + L1PA13 LINE L1 772 1258 -5529 5275 191 17 12 chr9 31348671 31350306 -110921138 + L1PA13 LINE L1 1396 3065 -3732 6571 124 41 49 chr9 31351416 31352653 -110918791 - Tigger3b DNA MER2_type -4 1227 1 21 57 0 0 chr9 31352714 31352749 -110918695 + AT_rich Low_complexity Low_complexity 1 35 0 318 314 13 6 chr9 31352766 31352787 -110918657 - L1MA10 LINE L1 0 6334 6314 1597 225 40 14 chr9 31352787 31353210 -110918234 - L1ME1 LINE L1 -12 6154 5721 863 293 61 32 chr9 31353306 31353780 -110917664 - L1MCc LINE L1 -5912 511 24 1000 294 79 45 chr9 31353841 31354936 -110916508 - L1MCc LINE L1 -4824 2117 1061 414 0 0 0 chr9 31354936 31354982 -110916462 + (TG)n Simple_repeat Simple_repeat 2 47 0 1620 132 4 23 chr9 31354983 31355241 -110916203 - AluSq SINE Alu -16 297 45 1000 294 79 45 chr9 31355241 31355417 -110916027 - L1MCc LINE L1 -5879 1062 802 10509 227 21 32 chr9 31355426 31358971 -110912473 - L1PA12 LINE L1 -2984 4600 9 246 308 0 8 chr9 31359526 31359646 -110911798 + L1M4 LINE L1 2593 2711 -3435 566 286 108 9 chr9 31361902 31362115 -110909329 - MIR SINE MIR 0 262 29 212 271 0 0 chr9 31362194 31362253 -110909191 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1340 215 13 80 chr9 31362313 31362703 -110908741 + MLT1A2 LTR MaLR 4 367 -7 261 365 111 17 chr9 31362705 31362886 -110908558 - MIR SINE MIR -61 201 4 21 36 0 0 chr9 31363347 31363375 -110908069 + AT_rich Low_complexity Low_complexity 1 28 0 3305 219 47 40 chr9 31363646 31363874 -110907570 - L1MB8 LINE L1 0 6178 5953 2075 105 0 51 chr9 31363874 31364187 -110907257 - AluSx SINE Alu -12 300 4 3305 219 47 40 chr9 31364187 31364877 -110906567 - L1MB8 LINE L1 -225 5953 5254 1916 239 53 7 chr9 31364889 31365437 -110906007 - L1MB8 LINE L1 -1835 4311 3739 320 209 26 52 chr9 31365759 31365874 -110905570 + CT-rich Low_complexity Low_complexity 6 117 0 288 53 0 0 chr9 31365885 31365923 -110905521 + (TG)n Simple_repeat Simple_repeat 1 38 0 5452 46 1 4 chr9 31366811 31367489 -110903955 - L1PA7 LINE L1 -2 6152 5477 2618 96 96 5 chr9 31367767 31368130 -110903314 + MLT2A1 LTR ERVL 1 406 -38 621 0 0 0 chr9 31368130 31368199 -110903245 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2618 96 96 5 chr9 31368199 31368242 -110903202 + MLT2A1 LTR ERVL 406 444 0 194 327 71 26 chr9 31371086 31371199 -110900245 - L2 LINE L2 -211 3061 2944 287 233 0 41 chr9 31371333 31371406 -110900038 + L1M4 LINE L1 2677 2746 -3400 1346 224 21 25 chr9 31371411 31371737 -110899707 - MLT1A1 LTR MaLR -40 325 1 2009 257 84 33 chr9 31371854 31372408 -110899036 - L1ME1 LINE L1 -1 6976 6452 1950 170 3 26 chr9 31372408 31372750 -110898694 - MER1B DNA MER1_type -3 334 1 2009 257 84 33 chr9 31372750 31373820 -110897624 - L1ME1 LINE L1 -525 6452 5127 1827 169 23 0 chr9 31374696 31375039 -110896405 - L1MB1 LINE L1 0 6168 5818 461 127 0 0 chr9 31375040 31375111 -110896333 + L1MB1 LINE L1 5743 5813 -355 667 257 69 31 chr9 31375146 31375407 -110896037 - L1ME1 LINE L1 -4788 2171 1901 309 288 177 32 chr9 31375745 31376000 -110895444 - L1ME1 LINE L1 -6309 546 2 3226 239 60 34 chr9 31376182 31377712 -110893732 + L1MD2 LINE L1 4787 6349 -10 21 36 0 0 chr9 31377744 31377772 -110893672 + AT_rich Low_complexity Low_complexity 1 28 0 341 314 73 47 chr9 31377947 31378231 -110893213 - L1ME4a LINE L1 -248 5873 5575 2039 120 3 3 chr9 31378231 31378522 -110892922 + AluSx SINE Alu 1 291 -21 341 314 73 47 chr9 31378522 31378619 -110892825 - L1ME4a LINE L1 -546 5575 5482 26 0 0 0 chr9 31378696 31378722 -110892722 + AT_rich Low_complexity Low_complexity 1 26 0 5307 76 1 37 chr9 31379726 31380485 -110890959 + L1PA8 LINE L1 5437 6168 -4 200 206 0 0 chr9 31380764 31380798 -110890646 + polypurine Low_complexity Low_complexity 1 34 0 21 0 0 0 chr9 31381458 31381479 -110889965 + AT_rich Low_complexity Low_complexity 1 21 0 293 340 11 11 chr9 31381684 31381778 -110889666 + L2 LINE L2 3169 3262 -10 235 311 75 19 chr9 31381868 31381974 -110889470 - L3 LINE CR1 -82 1495 1384 337 313 52 0 chr9 31382265 31382380 -110889064 - MIR SINE MIR 0 262 142 33 73 0 0 chr9 31383130 31383198 -110888246 + AT_rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr9 31383456 31383480 -110887964 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr9 31383539 31383583 -110887861 + AT_rich Low_complexity Low_complexity 1 44 0 468 333 135 0 chr9 31383856 31384078 -110887366 - MIR SINE MIR 0 262 11 324 306 9 9 chr9 31384111 31384222 -110887222 - MIR SINE MIR -30 232 122 198 316 103 43 chr9 31385307 31385424 -110886020 + MIR SINE MIR 68 191 -71 187 261 22 0 chr9 31385615 31385661 -110885783 - L2 LINE L2 -1 3271 3225 28 61 0 0 chr9 31385789 31385838 -110885606 + AT_rich Low_complexity Low_complexity 1 49 0 380 306 42 60 chr9 31385997 31386213 -110885231 + L2 LINE L2 3102 3313 0 278 330 32 0 chr9 31386277 31386371 -110885073 + L2 LINE L2 3201 3297 -16 23 54 0 0 chr9 31386977 31387014 -110884430 + AT_rich Low_complexity Low_complexity 1 37 0 282 194 133 10 chr9 31387737 31387835 -110883609 - MER69 DNA AcHobo -83 2443 2334 1356 162 35 69 chr9 31387916 31388262 -110883182 + L1MA7 LINE L1 5957 6290 -1 3859 141 47 36 chr9 31388893 31389596 -110881848 - MER50 LTR ERV1 -23 711 1 2080 61 87 0 chr9 31390940 31391217 -110880227 - AluY SINE Alu -10 301 1 281 180 30 40 chr9 31392266 31392366 -110879078 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 225 103 51 0 chr9 31392415 31392454 -110878990 + L1MC4 LINE L1 6663 6703 -1339 * 270 133 0 0 chr9 31392426 31392471 -110878973 - L1MC4 LINE L1 -1339 6703 6659 23 68 0 0 chr9 31392675 31392719 -110878725 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr9 31392995 31393017 -110878427 + AT_rich Low_complexity Low_complexity 1 22 0 301 356 64 4 chr9 31393220 31393487 -110877957 + L1MCc LINE L1 1253 1535 -4888 582 311 60 34 chr9 31393691 31394228 -110877216 + L1MCc LINE L1 1996 2546 -4576 520 288 88 15 chr9 31394322 31394527 -110876917 + L1MEc LINE L1 45 264 -6132 308 298 11 0 chr9 31394797 31394891 -110876553 + ERVL-B1 LTR ERVL 316 410 -5354 2529 99 14 14 chr9 31394891 31395255 -110876189 - THE1B LTR MaLR 0 364 1 8670 137 48 45 chr9 31395255 31396829 -110874615 - THE1B-int LTR MaLR 0 1580 1 2423 117 19 14 chr9 31396829 31397189 -110874255 - THE1B LTR MaLR 0 364 3 3302 212 31 18 chr9 31397189 31397868 -110873576 + ERVL-B1 LTR ERVL 404 1091 -4673 * 5163 182 16 35 chr9 31397860 31398005 -110873439 + ERVL-B1 LTR ERVL 4729 4875 -889 2344 92 0 0 chr9 31398005 31398308 -110873136 - AluY SINE Alu -8 303 1 5163 182 16 35 chr9 31398308 31399204 -110872240 + ERVL-B1 LTR ERVL 4875 5750 -14 987 223 40 92 chr9 31399211 31399583 -110871861 + MLT2B1 LTR ERVL 1 391 -23 333 0 0 0 chr9 31399583 31399620 -110871824 + (CA)n Simple_repeat Simple_repeat 2 38 0 252 0 0 0 chr9 31399619 31399647 -110871797 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 987 223 40 92 chr9 31399620 31399702 -110871742 + MLT2B1 LTR ERVL 391 412 -2 1001 217 37 94 chr9 31399702 31400052 -110871392 + L1MB7 LINE L1 5739 6068 -116 569 214 8 8 chr9 31400056 31400173 -110871271 - LTR28 LTR ERV1 -4 1016 900 774 211 94 79 chr9 31400213 31400890 -110870554 - LTR1 LTR ERV1 -39 981 1 515 204 0 0 chr9 31400892 31401005 -110870439 + L1MB8 LINE L1 6065 6177 -1 859 259 56 26 chr9 31401050 31401390 -110870054 + L1MEc LINE L1 1701 2050 -4346 1322 252 86 49 chr9 31401397 31401470 -110869974 + Charlie5 DNA MER1_type 1 63 -662 2362 119 23 0 chr9 31401470 31401823 -110869621 + L1PA14 LINE L1 5799 6159 -2 1322 252 86 49 chr9 31401823 31402356 -110869088 + Charlie5 DNA MER1_type 63 622 -103 2643 237 53 29 chr9 31402363 31403287 -110868157 + Charlie5 DNA MER1_type 1101 2046 -566 2457 126 14 12 chr9 31403302 31403544 -110867900 - L1MA2 LINE L1 0 6304 6059 1958 135 7 0 chr9 31403544 31403840 -110867604 - AluSg SINE Alu -12 298 1 2457 126 14 12 chr9 31403840 31404017 -110867427 - L1MA2 LINE L1 -245 6059 5884 289 130 22 0 chr9 31404017 31404063 -110867381 - Alu SINE Alu -253 49 3 1025 225 36 41 chr9 31404064 31404451 -110866993 + Charlie5 DNA MER1_type 2239 2623 0 578 271 65 31 chr9 31404688 31404917 -110866527 + L1MEc LINE L1 110 346 -6050 538 276 79 20 chr9 31404925 31405128 -110866316 - L1ME LINE L1 -655 5509 5295 239 200 18 0 chr9 31405131 31405186 -110866258 + (TA)n Simple_repeat Simple_repeat 1 56 0 3809 238 78 25 chr9 31405186 31405438 -110866006 - L1ME LINE L1 -874 5272 5035 2401 243 14 4 chr9 31405438 31405994 -110865450 - MER68 LTR ERV1 0 562 1 3809 238 78 25 chr9 31405994 31407135 -110864309 - L1ME LINE L1 -1111 5035 3805 242 344 42 0 chr9 31407506 31407602 -110863842 + L2 LINE L2 3214 3313 0 680 258 144 11 chr9 31408564 31408828 -110862616 + MER46C DNA MER2_type 14 312 -26 2010 128 0 0 chr9 31408830 31409156 -110862288 - AluSx SINE Alu 0 326 1 283 273 99 33 chr9 31409257 31409378 -110862066 - MIR SINE MIR -78 184 56 303 28 0 0 chr9 31410629 31410665 -110860779 + (TA)n Simple_repeat Simple_repeat 2 37 0 725 183 8 0 chr9 31410665 31410796 -110860648 - FLAM_A SINE Alu -3 139 8 448 297 167 45 chr9 31410798 31411255 -110860189 + L2 LINE L2 1943 2343 -971 402 114 14 0 chr9 31411255 31411325 -110860119 - L1MA8 LINE L1 -4 6287 6217 2006 80 0 0 chr9 31411326 31411577 -110859867 + AluSx SINE Alu 1 251 -61 448 297 167 45 chr9 31411577 31411608 -110859836 + L2 LINE L2 2342 2493 -821 1324 176 30 20 chr9 31411645 31411946 -110859498 - L1MB5 LINE L1 -3 6669 6366 2173 233 35 18 chr9 31411966 31412648 -110858796 - L1MB5 LINE L1 -797 5847 5154 4604 275 77 31 chr9 31412653 31416266 -110855178 - L1MB5 LINE L1 -1639 5005 1085 1975 141 13 0 chr9 31416266 31416564 -110854880 - AluY SINE Alu -9 302 1 4604 275 77 31 chr9 31416564 31417652 -110853792 - L1MB5 LINE L1 -5559 1085 48 263 413 62 23 chr9 31417736 31417995 -110853449 + L2 LINE L2 2566 2834 -480 278 240 0 0 chr9 31418198 31418248 -110853196 + Tigger3(Golem) DNA MER2_type 19 68 -2961 3623 166 34 7 chr9 31418253 31418934 -110852510 - HSMAR2 DNA Mariner 0 1302 604 1419 237 37 5 chr9 31418934 31419200 -110852244 + L1PA15 LINE L1 2180 2463 -3683 303 28 0 0 chr9 31419200 31419236 -110852208 + (TG)n Simple_repeat Simple_repeat 1 36 0 1419 237 37 5 chr9 31419236 31419345 -110852099 + L1PA15 LINE L1 2463 2567 -3579 2055 147 3 12 chr9 31419354 31419694 -110851750 - MER61B LTR ERV1 -29 396 60 10043 219 16 7 chr9 31419717 31422693 -110848751 + L1PA15 LINE L1 2837 5833 -332 24 0 0 0 chr9 31422716 31422740 -110848704 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 31422787 31422811 -110848633 + AT_rich Low_complexity Low_complexity 1 24 0 217 349 68 15 chr9 31422855 31422987 -110848457 + MIR SINE MIR 74 212 -50 275 320 117 46 chr9 31424684 31424965 -110846479 + L2 LINE L2 1813 2113 -1201 206 128 26 0 chr9 31425099 31425138 -110846306 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 296 184 0 chr9 31425148 31425246 -110846198 + L2 LINE L2 2261 2376 -938 263 309 53 126 chr9 31425491 31425753 -110845691 - L2 LINE L2 -551 2763 2521 598 130 0 17 chr9 31427118 31427233 -110844211 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 24 32 0 0 chr9 31427400 31427431 -110844013 + AT_rich Low_complexity Low_complexity 1 31 0 183 314 76 67 chr9 31427712 31427817 -110843627 + MER5B DNA MER1_type 23 128 -50 * 222 379 43 0 chr9 31427725 31427841 -110843603 - MER5A DNA MER1_type -35 154 34 226 73 49 0 chr9 31428345 31428386 -110843058 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4761 169 68 20 chr9 31428515 31429523 -110841921 - L1MC2 LINE L1 -9 6335 5279 2754 150 9 0 chr9 31430881 31431340 -110840104 - L1PA16 LINE L1 0 6166 5704 1191 177 4 1 chr9 31431342 31431575 -110839869 + L1PA16 LINE L1 5459 5695 -473 1253 283 92 40 chr9 31431600 31432369 -110839075 + L2 LINE L2 2367 3168 -145 4151 86 0 4 chr9 31432784 31433340 -110838104 + MER41A LTR ERV1 1 554 0 21384 152 80 52 chr9 31433424 31434711 -110836733 + MER41A-int LTR ERV1 1 1251 -4695 1990 131 3 10 chr9 31434711 31435009 -110836435 - AluSx SINE Alu -15 297 2 21384 152 80 52 chr9 31435009 31435115 -110836329 + MER41A-int LTR ERV1 1251 1353 -4593 1868 137 29 35 chr9 31435115 31435429 -110836015 + AluSx SINE Alu 1 312 0 21384 152 80 52 chr9 31435429 31439735 -110831709 + MER41A-int LTR ERV1 1353 5942 -4 4080 89 4 0 chr9 31439737 31440289 -110831155 + MER41A LTR ERV1 1 554 0 27 49 0 0 chr9 31440656 31440697 -110830747 + AT_rich Low_complexity Low_complexity 1 41 0 1900 41 0 0 chr9 31440820 31441041 -110830403 + AluY SINE Alu 86 306 -5 1110 209 171 84 chr9 31442002 31442430 -110829014 + MLT1D LTR MaLR 1 467 0 611 172 7 86 chr9 31443779 31443930 -110827514 + MER97c DNA MER1_type? 40 178 -912 531 263 39 52 chr9 31444055 31444287 -110827157 - L1ME2 LINE L1 -1 6163 5935 34 55 0 0 chr9 31444529 31444584 -110826860 + AT_rich Low_complexity Low_complexity 1 55 0 1232 255 107 41 chr9 31445404 31445443 -110826001 - MLT2B1 LTR ERVL 0 520 485 559 48 12 12 chr9 31445443 31445527 -110825917 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 1232 255 107 41 chr9 31445527 31445973 -110825471 - MLT2B1 LTR ERVL -35 485 3 288 260 55 0 chr9 31445981 31446054 -110825390 + MER103 DNA DNA 28 104 -62 1974 123 0 4 chr9 31446517 31446793 -110824651 - AluSx SINE Alu -35 277 3 1603 161 122 6 chr9 31447368 31447704 -110823740 + THE1C LTR MaLR 1 375 0 8840 143 11 54 chr9 31447706 31449354 -110822090 + THE1C-int LTR MaLR 3 1580 0 1765 191 38 16 chr9 31449354 31449721 -110821723 + THE1C LTR MaLR 1 375 0 292 299 80 58 chr9 31450101 31450238 -110821206 - MIR3 SINE MIR -2 206 67 342 184 40 40 chr9 31450971 31451047 -110820397 - MIR SINE MIR -106 156 81 23 33 0 0 chr9 31451240 31451270 -110820174 + AT_rich Low_complexity Low_complexity 1 30 0 462 273 61 71 chr9 31451278 31451670 -110819774 + L1ME4a LINE L1 5638 6025 -96 1913 126 34 7 chr9 31452126 31452419 -110819025 - AluSx SINE Alu -11 301 1 21 36 0 0 chr9 31453510 31453538 -110817906 + AT_rich Low_complexity Low_complexity 1 28 0 320 369 37 5 chr9 31454791 31454978 -110816466 + MIR SINE MIR 64 256 -6 467 321 42 7 chr9 31455132 31455327 -110816117 - MIR3 SINE MIR -1 207 1 2149 202 92 25 chr9 31456807 31457331 -110814113 + MER89 LTR ERV1 1 559 0 1906 127 69 0 chr9 31458079 31458370 -110813074 + AluSx SINE Alu 1 311 -1 267 309 139 46 chr9 31459589 31459755 -110811689 - MIR3 SINE MIR -64 144 2 275 329 12 0 chr9 31459864 31459946 -110811498 - L2 LINE L2 0 3313 3231 28 71 0 0 chr9 31461741 31461797 -110809647 + AT_rich Low_complexity Low_complexity 1 56 0 1205 124 46 0 chr9 31462068 31462262 -110809182 + L1MA2 LINE L1 6102 6304 0 21 36 0 0 chr9 31462397 31462425 -110809019 + AT_rich Low_complexity Low_complexity 1 28 0 686 253 3 140 chr9 31462628 31462920 -110808524 + L1MDa LINE L1 17 268 -6272 739 247 12 0 chr9 31462922 31463084 -110808360 + L1MC1 LINE L1 100 263 -6279 1939 259 54 39 chr9 31463118 31463558 -110807886 + L1MC1 LINE L1 347 802 -5740 180 0 0 0 chr9 31463558 31463578 -110807866 + (CA)n Simple_repeat Simple_repeat 1 20 0 1939 259 54 39 chr9 31463578 31463786 -110807658 + L1MC1 LINE L1 802 1005 -5537 1101 227 99 16 chr9 31463784 31464167 -110807277 + L1MC1 LINE L1 1682 2096 -4550 * 304 209 0 12 chr9 31464196 31464282 -110807162 + L1MC1 LINE L1 2231 2315 -4331 2041 237 53 33 chr9 31464336 31465187 -110806257 + L1MC1 LINE L1 2537 3418 -3226 1209 235 98 21 chr9 31465198 31465400 -110806044 - MLT1A2 LTR MaLR -9 365 125 1337 153 133 55 chr9 31465400 31465746 -110805698 - THE1C LTR MaLR -2 373 1 1209 235 98 21 chr9 31465746 31465879 -110805565 - MLT1A2 LTR MaLR -249 125 4 939 245 203 33 chr9 31465880 31466085 -110805359 + L1MC1 LINE L1 3419 3588 -3056 592 197 14 7 chr9 31466085 31466227 -110805217 + L1MA8 LINE L1 6143 6285 -6 939 245 203 33 chr9 31466227 31466593 -110804851 + L1MC1 LINE L1 3588 4087 -2557 * 1343 209 50 0 chr9 31466591 31466893 -110804551 + L1MC1 LINE L1 5871 6187 -495 989 224 12 8 chr9 31466893 31467152 -110804292 + L1MA9 LINE L1 6015 6274 -38 * 3231 261 103 27 chr9 31467147 31468899 -110802545 + L1MD2 LINE L1 2489 4402 -2138 12523 104 14 0 chr9 31468899 31471518 -110799926 + L1PA7 LINE L1 3514 6149 -5 3231 261 103 27 chr9 31471518 31471594 -110799850 + L1MD2 LINE L1 4402 4471 -2069 1529 193 27 7 chr9 31471596 31471896 -110799548 + L1MC1 LINE L1 6406 6711 -120 2067 254 58 10 chr9 31471937 31471957 -110799487 + L1MD2 LINE L1 5633 5651 -1102 2893 185 39 7 chr9 31471957 31472567 -110798877 + L1PB4 LINE L1 5526 6155 -1 2067 254 58 10 chr9 31472567 31473201 -110798243 + L1MD2 LINE L1 5651 6558 -195 279 114 0 0 chr9 31473201 31473245 -110798199 + (CA)n Simple_repeat Simple_repeat 1 44 0 2067 254 58 10 chr9 31473245 31473436 -110798008 + L1MD2 LINE L1 6558 6739 -14 246 357 31 10 chr9 31474414 31474512 -110796932 - L2 LINE L2 -5 3267 3168 1931 188 59 10 chr9 31474526 31474931 -110796513 + MSTB1 LTR MaLR 5 429 -3 206 62 31 0 chr9 31475425 31475457 -110795987 + (TA)n Simple_repeat Simple_repeat 2 34 0 207 139 0 0 chr9 31475572 31475608 -110795836 + (CAATA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr9 31476144 31476172 -110795272 + AT_rich Low_complexity Low_complexity 1 28 0 1456 174 85 26 chr9 31477950 31478290 -110793154 + MER46B DNA MER2_type 1 235 -1 199 271 254 51 chr9 31479593 31479711 -110791733 + MIR3 SINE MIR 60 201 -7 2312 240 96 50 chr9 31479961 31480471 -110790973 + L1ME1 LINE L1 4645 5130 -1036 2059 129 13 0 chr9 31480471 31480774 -110790670 + AluSg SINE Alu 1 307 -3 2312 240 96 50 chr9 31480774 31481723 -110789721 + L1ME1 LINE L1 5130 6162 -4 25 75 0 0 chr9 31481782 31481835 -110789609 + AT_rich Low_complexity Low_complexity 1 53 0 328 304 97 51 chr9 31483426 31483663 -110787781 + HAL1 LINE L1 803 1050 -1457 21 0 0 0 chr9 31483681 31483702 -110787742 + AT_rich Low_complexity Low_complexity 1 21 0 2020 227 38 22 chr9 31483980 31484477 -110786967 + MLT1D LTR MaLR 1 505 0 267 381 8 8 chr9 31484642 31484760 -110786684 - L2 LINE L2 -17 3296 3179 196 256 0 0 chr9 31488155 31488194 -110783250 + MIR SINE MIR 146 184 -78 1744 154 18 0 chr9 31488223 31488386 -110783058 - AluJo SINE Alu -27 285 113 183 100 0 0 chr9 31488386 31488416 -110783028 + (TG)n Simple_repeat Simple_repeat 1 30 0 1744 154 18 0 chr9 31488416 31488532 -110782912 - AluJo SINE Alu -199 113 1 26 50 0 0 chr9 31488631 31488671 -110782773 + AT_rich Low_complexity Low_complexity 1 40 0 232 278 93 9 chr9 31489780 31489888 -110781556 - MER112 DNA MER1_type -78 182 66 500 248 78 14 chr9 31490258 31490399 -110781045 + L1MA6 LINE L1 469 618 -6871 * 5959 208 46 4 chr9 31490394 31491801 -110779643 - L1MA4 LINE L1 -1832 4314 2848 4874 183 35 20 chr9 31491799 31493773 -110777671 + L1MA4 LINE L1 4298 6299 -1 * 909 298 25 63 chr9 31493799 31494242 -110777202 + L1MA6 LINE L1 617 1042 -6447 12683 206 76 32 chr9 31494306 31499797 -110771647 + L1MA6 LINE L1 2008 7718 -1 214 325 52 93 chr9 31500116 31500156 -110771288 - MIR SINE MIR -28 234 194 2154 92 17 17 chr9 31500156 31500450 -110770994 + AluSg SINE Alu 3 296 -14 214 325 52 93 chr9 31500450 31500603 -110770841 - MIR SINE MIR -68 194 49 586 317 102 40 chr9 31501025 31501350 -110770094 + LTR16A LTR ERVL 16 360 -90 1846 215 67 33 chr9 31501732 31502212 -110769232 + MLT1D LTR MaLR 1 496 -9 243 0 0 0 chr9 31503252 31503279 -110768165 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 71 0 0 chr9 31503714 31503756 -110767688 + AT_rich Low_complexity Low_complexity 1 42 0 1356 246 78 10 chr9 31505836 31506235 -110765209 + L1MC4a LINE L1 7087 7512 -296 * 5679 103 8 17 chr9 31506225 31506752 -110764692 + L1PA13 LINE L1 5302 5821 -342 2256 110 0 0 chr9 31506752 31507051 -110764393 + AluY SINE Alu 3 301 -10 5679 103 8 17 chr9 31507051 31507392 -110764052 + L1PA13 LINE L1 5821 6163 0 1232 213 0 27 chr9 31507423 31507686 -110763758 + AluJb SINE Alu 1 256 -56 372 133 0 0 chr9 31507706 31507766 -110763678 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2182 111 0 0 chr9 31507996 31508294 -110763150 + AluY SINE Alu 1 298 -13 317 0 0 65 chr9 31508447 31508493 -110762951 + (A)n Simple_repeat Simple_repeat 1 43 0 1926 60 38 19 chr9 31509229 31509496 -110761948 + HERVK14 LTR ERVK 5488 5759 -186 276 249 0 0 chr9 31509496 31509558 -110761886 + MER41C LTR ERV1 1 53 -501 678 94 94 34 chr9 31509558 31509675 -110761769 + HERVK14 LTR ERVK 5822 5945 0 1802 97 32 179 chr9 31509678 31510081 -110761363 + LTR14B LTR ERVK 1 608 0 2622 179 121 42 chr9 31510082 31510341 -110761103 - L1MA7 LINE L1 -257 6034 5797 1930 133 7 23 chr9 31510341 31510650 -110760794 - AluSp SINE Alu -9 304 1 2622 179 121 42 chr9 31510650 31511568 -110759876 - L1MA7 LINE L1 -494 5797 4761 258 81 0 0 chr9 31511693 31511730 -110759714 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 348 188 0 0 chr9 31511729 31511798 -110759646 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 655 191 13 19 chr9 31511806 31511963 -110759481 - L1M3 LINE L1 -709 5474 5319 2797 0 0 3 chr9 31513760 31514068 -110757376 - AluYa5 SINE Alu -4 307 1 473 272 24 8 chr9 31515049 31515174 -110756270 - MIR3 SINE MIR -7 201 75 325 366 28 0 chr9 31515424 31515566 -110755878 - MER115 DNA AcHobo -413 280 135 432 299 22 87 chr9 31515748 31516059 -110755385 - HAL1 LINE L1 -1674 833 543 351 60 0 0 chr9 31516060 31516110 -110755334 + (T)n Simple_repeat Simple_repeat 1 50 0 275 237 71 160 chr9 31516198 31516263 -110755181 - HAL1 LINE L1 -2086 421 352 2182 111 0 0 chr9 31516263 31516561 -110754883 - AluY SINE Alu -13 298 1 275 237 71 160 chr9 31516561 31516833 -110754611 - HAL1 LINE L1 -2155 352 114 182 37 37 0 chr9 31517268 31517295 -110754149 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1995 172 25 0 chr9 31517495 31517850 -110753594 + THE1B LTR MaLR 1 364 0 9599 121 34 44 chr9 31517850 31519428 -110752016 + THE1B-int LTR MaLR 1 1563 -17 1740 147 37 0 chr9 31519428 31519701 -110751743 + THE1B LTR MaLR 82 364 0 811 228 129 0 chr9 31519740 31519933 -110751511 + MER20 DNA MER1_type 1 218 -1 5487 194 114 10 chr9 31519937 31521300 -110750144 - L1MCa LINE L1 -4805 1621 20 359 343 14 7 chr9 31521977 31522120 -110749324 - MER117 DNA MER1_type -42 155 12 960 242 84 49 chr9 31524549 31524764 -110746680 + L1M4 LINE L1 3879 4085 -2061 1421 89 80 25 chr9 31524764 31525001 -110746443 + L1PA8 LINE L1 5912 6161 -11 960 242 84 49 chr9 31525001 31525215 -110746229 + L1M4 LINE L1 4085 4323 -1823 756 243 46 23 chr9 31525220 31525483 -110745961 + L1M4 LINE L1 4670 4938 -1208 824 248 74 19 chr9 31526258 31526621 -110744823 + L1M4 LINE L1 4967 5349 -797 21 36 0 0 chr9 31526806 31526834 -110744610 + AT_rich Low_complexity Low_complexity 1 28 0 736 225 141 0 chr9 31527032 31527223 -110744221 + MSTD-int LTR MaLR 1504 1721 -14 433 215 32 0 chr9 31527234 31527327 -110744117 + MSTD LTR MaLR 1 96 -300 324 335 61 12 chr9 31528014 31528178 -110743266 + MER5B DNA MER1_type 2 173 -5 458 207 55 213 chr9 31528241 31528570 -110742874 + L1MD1 LINE L1 3 279 -6261 * 1820 262 46 17 chr9 31528558 31529280 -110742164 + L1MD1 LINE L1 2904 3646 -2894 3461 178 12 14 chr9 31529284 31529932 -110741512 - MER39B LTR ERV1 -6 647 1 1619 268 132 11 chr9 31529933 31530750 -110740694 + L1MD1 LINE L1 3645 4560 -1980 * 3181 231 106 24 chr9 31530736 31532351 -110739093 + L1MD1 LINE L1 4881 6626 -10 207 0 0 0 chr9 31532481 31532504 -110738940 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr9 31532912 31532933 -110738511 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 31533667 31533701 -110737743 + AT_rich Low_complexity Low_complexity 1 34 0 417 294 29 15 chr9 31534517 31534653 -110736791 - MIR SINE MIR -39 223 86 308 401 18 15 chr9 31536042 31536316 -110735128 - L1MC4 LINE L1 -612 7430 7156 392 222 61 10 chr9 31536583 31536682 -110734762 + MSTD LTR MaLR 1 104 -261 564 226 34 79 chr9 31536747 31537028 -110734416 + MSTD LTR MaLR 118 396 0 266 317 100 0 chr9 31537059 31537179 -110734265 - L1MC4 LINE L1 -1165 6877 6746 877 261 88 58 chr9 31537462 31537851 -110733593 + MER97c DNA MER1_type? 1 401 -689 500 62 0 0 chr9 31537851 31537915 -110733529 + THE1C LTR MaLR 4 67 -308 250 247 253 11 chr9 31537916 31538098 -110733346 + MER97c DNA MER1_type? 838 1063 -27 24 32 0 0 chr9 31538294 31538325 -110733119 + AT_rich Low_complexity Low_complexity 1 31 0 642 319 74 35 chr9 31538326 31538731 -110732713 + L1M3c LINE L1 1 421 -5720 370 177 13 0 chr9 31538946 31539025 -110732419 + L1MB1 LINE L1 4626 4705 -1441 1994 217 132 17 chr9 31539072 31539709 -110731735 - MER50 LTR ERV1 -17 717 8 3085 187 77 1 chr9 31539713 31540377 -110731067 + L1MB1 LINE L1 5459 6172 -17 288 0 0 0 chr9 31540515 31540547 -110730897 + (CA)n Simple_repeat Simple_repeat 2 33 0 556 231 155 2 chr9 31542141 31542349 -110729095 - L1 LINE L1 -1315 4831 4597 1599 66 39 18 chr9 31542455 31542711 -110728733 - HERVK14 LTR ERVK -577 5368 5038 356 41 0 0 chr9 31542711 31542760 -110728684 - HERV17 LTR ERV1 -8145 481 433 * 1083 55 28 7 chr9 31542759 31542904 -110728540 - HERV17 LTR ERV1 -3073 5553 5406 * 9803 67 26 9 chr9 31542884 31544187 -110727257 - HERV17 LTR ERV1 -4872 3754 2430 8381 77 16 7 chr9 31544173 31545312 -110726132 - HERV17 LTR ERV1 -6613 2013 865 * 5089 91 46 8 chr9 31545372 31546128 -110725316 - HERVK14 LTR ERVK -5160 785 1 1968 89 73 104 chr9 31546128 31546545 -110724899 - LTR14B LTR ERVK 0 608 1 889 143 81 81 chr9 31546547 31546805 -110724639 + L1MA7 LINE L1 6030 6287 -4 269 318 65 0 chr9 31548026 31548133 -110723311 + L2 LINE L2 3195 3308 -5 310 330 21 10 chr9 31548659 31548756 -110722688 - MIR SINE MIR -152 110 13 22 0 0 0 chr9 31549193 31549215 -110722229 + AT_rich Low_complexity Low_complexity 1 22 0 285 135 0 0 chr9 31550427 31550479 -110720965 + (GGAGA)n Simple_repeat Simple_repeat 2 53 0 2654 229 19 0 chr9 31551058 31551686 -110719758 + L1 LINE L1 3859 4498 -1648 4960 141 38 1 chr9 31551696 31553038 -110718406 + L1PA16 LINE L1 4797 6162 -4 2511 233 50 44 chr9 31554329 31554752 -110716692 - L1ME1 LINE L1 -3 6163 5731 2515 57 0 10 chr9 31554752 31555066 -110716378 - AluY SINE Alu 0 311 1 2511 233 50 44 chr9 31555066 31555467 -110715977 - L1ME1 LINE L1 -435 5731 5334 3282 249 68 31 chr9 31555493 31556149 -110715295 - L1M4 LINE L1 -512 5672 5042 240 35 0 0 chr9 31556149 31556178 -110715266 + (TG)n Simple_repeat Simple_repeat 1 29 0 3282 249 68 31 chr9 31556178 31557189 -110714255 - L1M4 LINE L1 -1142 5042 3943 274 176 0 39 chr9 31557196 31557247 -110714197 + AluSp SINE Alu 139 187 -116 428 169 22 22 chr9 31557248 31557337 -110714107 + FLAM_A SINE Alu 40 128 -14 1551 218 59 60 chr9 31557348 31557927 -110713517 - L1M4 LINE L1 -2203 3943 3366 582 281 42 0 chr9 31558011 31558249 -110713195 - L1M4 LINE L1 -2979 3167 2920 3749 120 9 3 chr9 31558259 31558825 -110712619 - L1PA12 LINE L1 0 6168 5600 2250 102 27 0 chr9 31558825 31559160 -110712284 + L1PA12 LINE L1 5260 5603 -565 552 285 6 0 chr9 31559259 31559431 -110712013 - L1M4 LINE L1 -3275 2871 2699 2069 133 3 0 chr9 31560011 31560311 -110711133 + AluSx SINE Alu 1 301 -11 249 298 40 66 chr9 31560312 31560463 -110710981 + MIR SINE MIR 47 193 -69 550 88 12 0 chr9 31560852 31560932 -110710512 - L1 LINE L1 -1561 4585 4505 1279 212 40 105 chr9 31560932 31561127 -110710317 + MLT1D LTR MaLR 102 255 -250 512 200 8 50 chr9 31561127 31561247 -110710197 + FLAM_A SINE Alu 1 115 -18 1279 212 40 105 chr9 31561247 31561481 -110709963 + MLT1D LTR MaLR 255 503 -2 28 48 0 0 chr9 31562096 31562138 -110709306 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 31562293 31562314 -110709130 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr9 31562801 31562848 -110708596 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 31562933 31562965 -110708479 + AT_rich Low_complexity Low_complexity 1 32 0 22 80 0 0 chr9 31563221 31563271 -110708173 + AT_rich Low_complexity Low_complexity 1 50 0 268 288 15 0 chr9 31563418 31563484 -110707960 + MIR SINE MIR 1 67 -195 3711 210 58 11 chr9 31563726 31564734 -110706710 + L1MB2 LINE L1 5111 6165 -6 335 269 138 25 chr9 31564811 31564971 -110706473 + MIR SINE MIR 85 262 0 243 206 0 0 chr9 31566587 31566650 -110704794 + L1MC4 LINE L1 6641 6703 -1339 230 296 23 0 chr9 31566650 31566738 -110704706 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 1739 169 25 66 chr9 31566845 31567252 -110704192 + MLT1B LTR MaLR 1 390 0 1934 214 39 5 chr9 31567489 31567901 -110703543 + MSTB LTR MaLR 1 426 0 6057 215 24 53 chr9 31567901 31568951 -110702493 + MSTB-int LTR MaLR 1 1001 -650 1818 44 4 0 chr9 31568951 31569177 -110702267 + L1PA5 LINE L1 5926 6154 0 6057 215 24 53 chr9 31569177 31569519 -110701925 + MSTB-int LTR MaLR 1001 1352 -299 350 291 73 0 chr9 31569629 31569739 -110701705 - MIR SINE MIR -108 154 37 204 329 26 13 chr9 31569868 31569944 -110701500 + L3 LINE CR1 1500 1576 -1 198 165 35 26 chr9 31570464 31570579 -110700865 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 1573 204 32 26 chr9 31570682 31571059 -110700385 + L1PA16 LINE L1 5772 6150 -16 45 45 0 0 chr9 31571322 31571388 -110700056 + AT_rich Low_complexity Low_complexity 1 66 0 231 342 29 98 chr9 31571642 31571917 -110699527 + L2 LINE L2 2936 3191 -81 26 50 0 0 chr9 31572553 31572593 -110698851 + AT_rich Low_complexity Low_complexity 1 40 0 379 309 56 38 chr9 31572997 31573293 -110698151 + LTR16C LTR ERVL 149 491 0 378 42 0 0 chr9 31573865 31573913 -110697531 + (CA)n Simple_repeat Simple_repeat 1 48 0 281 250 48 77 chr9 31576009 31576113 -110695331 + L2 LINE L2 3141 3241 -31 504 190 0 43 chr9 31576185 31576230 -110695214 - MER20 DNA MER1_type 0 219 174 261 0 0 0 chr9 31576230 31576259 -110695185 + (TA)n Simple_repeat Simple_repeat 2 30 0 504 190 0 43 chr9 31576259 31576329 -110695115 - MER20 DNA MER1_type -45 174 109 3090 183 14 16 chr9 31576675 31577298 -110694146 + L1MA7 LINE L1 5522 6143 -148 4556 186 44 15 chr9 31577301 31577969 -110693475 - L1PA15 LINE L1 -1 6815 6093 2236 108 7 0 chr9 31577969 31578274 -110693170 - AluSc SINE Alu 0 309 3 4556 186 44 15 chr9 31578274 31578707 -110692737 - L1PA15 LINE L1 -723 6093 5674 * 7475 227 18 16 chr9 31578700 31580568 -110690876 - L1PA15 LINE L1 -1393 5404 3533 1896 261 0 2 chr9 31580563 31580977 -110690467 - L1PA15 LINE L1 -6373 414 2 * 577 159 38 38 chr9 31580978 31581110 -110690334 + L1MA7 LINE L1 6135 6266 -25 24 93 0 0 chr9 31581211 31581265 -110690179 + AT_rich Low_complexity Low_complexity 1 54 0 228 185 19 0 chr9 31581273 31581327 -110690117 + A-rich Low_complexity Low_complexity 5 59 0 463 202 22 0 chr9 31581703 31581792 -110689652 + L1M4b LINE L1 4 94 -6765 1152 161 79 20 chr9 31581812 31582066 -110689378 + L1MA9 LINE L1 6044 6312 0 * 1671 236 98 83 chr9 31582053 31582938 -110688506 + L1M4b LINE L1 948 1840 -5015 583 167 48 124 chr9 31582940 31583150 -110688294 + L1MC2 LINE L1 6151 6344 0 2120 106 3 33 chr9 31584058 31584361 -110687083 + AluSg SINE Alu 3 296 -14 10469 150 31 18 chr9 31585015 31587404 -110684040 + Tigger1 DNA MER2_type 4 2414 -4 1900 136 71 14 chr9 31588076 31588429 -110683015 - THE1C LTR MaLR -2 373 1 719 169 0 0 chr9 31588526 31588644 -110682800 + FLAM_C SINE Alu 1 118 -15 1274 231 16 19 chr9 31588664 31588975 -110682469 + AluJo SINE Alu 1 310 -2 25 31 0 0 chr9 31589151 31589183 -110682261 + AT_rich Low_complexity Low_complexity 1 32 0 2638 20 0 0 chr9 31589214 31589518 -110681926 + L1PA5 LINE L1 5842 6145 -9 414 0 0 0 chr9 31590007 31590053 -110681391 + (CA)n Simple_repeat Simple_repeat 2 47 0 200 250 28 0 chr9 31590815 31590887 -110680557 + (TA)n Simple_repeat Simple_repeat 2 75 0 25 0 0 0 chr9 31591435 31591460 -110679984 + AT_rich Low_complexity Low_complexity 1 25 0 1346 319 57 23 chr9 31593900 31594517 -110676927 - L2 LINE L2 -364 2950 2313 2015 172 52 7 chr9 31595026 31595432 -110676012 - MSTA LTR MaLR 0 428 5 8204 189 30 1 chr9 31595434 31596944 -110674500 - MSTA-int LTR MaLR 0 1651 99 911 172 52 11 chr9 31596944 31597118 -110674326 - MSTA LTR MaLR -247 181 1 23 0 0 0 chr9 31597475 31597498 -110673946 + AT_rich Low_complexity Low_complexity 1 23 0 2173 111 7 0 chr9 31600201 31600499 -110670945 + AluSg SINE Alu 3 302 -8 267 301 77 35 chr9 31600599 31600885 -110670559 - L1M4c LINE L1 -4055 2591 2294 1434 179 9 63 chr9 31601006 31601325 -110670119 - AluJb SINE Alu 0 302 1 1570 273 88 18 chr9 31601350 31602405 -110669039 - L1M4c LINE L1 -4587 2059 946 5958 231 49 26 chr9 31602425 31602685 -110668759 - L1 LINE L1 -2202 4586 4333 264 59 0 0 chr9 31602685 31602719 -110668725 + (TG)n Simple_repeat Simple_repeat 2 35 0 5958 231 49 26 chr9 31602719 31604395 -110667049 - L1 LINE L1 -2455 4333 2597 8542 189 33 139 chr9 31604508 31605094 -110666350 - L1 LINE L1 -4184 2605 1959 1533 164 66 41 chr9 31605094 31605460 -110665984 + THE1C LTR MaLR 1 375 0 8542 189 33 139 chr9 31605460 31607786 -110663658 - L1 LINE L1 -4830 1959 3 637 303 149 58 chr9 31607955 31608674 -110662770 - L1M4c LINE L1 -5661 881 98 29 78 0 0 chr9 31608912 31608976 -110662468 + AT_rich Low_complexity Low_complexity 1 64 0 25 0 0 0 chr9 31609113 31609138 -110662306 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr9 31609157 31609197 -110662247 + AT_rich Low_complexity Low_complexity 1 40 0 399 276 20 116 chr9 31609487 31609732 -110661712 + MIR SINE MIR 22 248 -14 5618 207 18 42 chr9 31610382 31610897 -110660547 - L1MA9 LINE L1 -45 6267 5742 2197 104 3 0 chr9 31610897 31611186 -110660258 - AluSc SINE Alu -17 292 3 5618 207 18 42 chr9 31611186 31612094 -110659350 - L1MA9 LINE L1 -570 5742 4814 1586 182 40 50 chr9 31612094 31612473 -110658971 - THE1C LTR MaLR 0 375 1 8262 147 91 9 chr9 31612474 31613933 -110657511 - THE1C-int LTR MaLR -1 1579 1 1726 157 45 50 chr9 31613933 31614310 -110657134 - THE1C LTR MaLR 0 375 1 5618 207 18 42 chr9 31614310 31614639 -110656805 - L1MA9 LINE L1 -1497 4815 4480 2283 99 0 13 chr9 31614639 31614941 -110656503 - AluY SINE Alu -12 299 2 5618 207 18 42 chr9 31614941 31615510 -110655934 - L1MA9 LINE L1 -1832 4480 3999 411 68 0 0 chr9 31616957 31617016 -110654428 + (GA)n Simple_repeat Simple_repeat 2 60 0 1534 228 55 3 chr9 31617016 31617362 -110654082 - MLT2D LTR ERVL -50 364 1 425 258 52 48 chr9 31618069 31618195 -110653249 - L1M4 LINE L1 -1439 4707 4583 1810 172 18 15 chr9 31618195 31618538 -110652906 - MER2 DNA MER2_type 0 344 1 425 258 52 48 chr9 31618538 31618663 -110652781 - L1M4 LINE L1 -1563 4583 4455 641 221 62 101 chr9 31618808 31619236 -110652208 + LTR1B LTR ERV1 1 534 -486 201 214 18 18 chr9 31619562 31619618 -110651826 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 28 48 0 0 chr9 31620451 31620493 -110650951 + AT_rich Low_complexity Low_complexity 1 42 0 2823 90 17 68 chr9 31620657 31621125 -110650319 + MLT2A1 LTR ERVL 1 444 0 25 51 0 0 chr9 31622579 31622618 -110648826 + AT_rich Low_complexity Low_complexity 1 39 0 695 261 37 21 chr9 31623538 31623726 -110647718 + MIR SINE MIR 70 260 -2 273 236 0 0 chr9 31625003 31625058 -110646386 + MER5A DNA MER1_type 52 106 -83 23 78 0 0 chr9 31625234 31625285 -110646159 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr9 31625339 31625372 -110646072 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr9 31625675 31625700 -110645744 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 31625862 31625883 -110645561 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 31626158 31626190 -110645254 + AT_rich Low_complexity Low_complexity 1 32 0 266 368 11 6 chr9 31628791 31628965 -110642479 - L1MEc LINE L1 -6190 206 32 2006 112 7 0 chr9 31629904 31630209 -110641235 - AluSg SINE Alu 0 307 1 4441 185 33 14 chr9 31630214 31631201 -110640243 - L1MA8 LINE L1 -3 7707 6702 2644 256 59 21 chr9 31631187 31632647 -110638797 - L1MA8 LINE L1 -3180 4385 1885 * 1350 278 79 37 chr9 31632660 31633228 -110638216 - L1MA8 LINE L1 -6432 1057 466 1097 255 19 53 chr9 31633385 31633761 -110637683 - MLT2C1 LTR ERVL -4 393 31 3158 261 59 23 chr9 31633807 31635137 -110636307 - L1M4 LINE L1 -2382 3764 2387 39 60 0 0 chr9 31635137 31635204 -110636240 + AT_rich Low_complexity Low_complexity 1 67 0 1735 127 65 0 chr9 31635205 31635480 -110635964 + AluSq SINE Alu 1 293 -20 10191 158 35 7 chr9 31636395 31639476 -110631968 - L1MA1 LINE L1 0 6302 3134 1605 142 4 4 chr9 31639475 31639750 -110631694 + L1M1 LINE L1 3115 3389 -4176 * 1747 193 68 49 chr9 31640546 31640955 -110630489 - MSTB LTR MaLR -9 417 1 22 0 0 0 chr9 31640980 31641002 -110630442 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr9 31641601 31641653 -110629791 + AT_rich Low_complexity Low_complexity 1 52 0 1579 263 74 82 chr9 31642170 31643064 -110628380 + L1ME LINE L1 2 888 -5182 1761 108 73 99 chr9 31643726 31644128 -110627316 + LTR14B LTR ERVK 7 608 0 5421 96 25 3 chr9 31644128 31644896 -110626548 + HERVK14 LTR ERVK 1 785 -5160 8273 72 20 36 chr9 31644965 31645343 -110626101 + HERV17 LTR ERV1 865 1247 -7379 355 40 0 20 chr9 31645343 31645393 -110626051 + L1PA6 LINE L1 6098 6146 -8 8273 72 20 36 chr9 31645393 31646182 -110625262 + HERV17 LTR ERV1 1247 2014 -6612 * 9654 59 40 26 chr9 31646167 31647474 -110623970 + HERV17 LTR ERV1 2430 3754 -4872 750 113 57 21 chr9 31647453 31647594 -110623850 + HERV17 LTR ERV1 5405 5550 -3076 * 318 62 0 0 chr9 31647597 31647645 -110623799 + HERV17 LTR ERV1 433 480 -8146 3216 75 26 15 chr9 31647646 31648291 -110623153 + HERVK14 LTR ERVK 5038 5759 -186 292 196 0 33 chr9 31648291 31648367 -110623077 + MER41C LTR ERV1 1 61 -493 727 35 52 95 chr9 31648367 31648483 -110622961 + HERVK14 LTR ERVK 5835 5945 0 287 83 0 42 chr9 31648486 31648534 -110622910 + LTR14B LTR ERVK 1 46 -562 * 1917 114 114 35 chr9 31648522 31648891 -110622553 + LTR14B LTR ERVK 211 608 0 464 307 108 22 chr9 31649955 31650427 -110621017 + MLT1F LTR MaLR 48 549 -6 386 185 0 2 chr9 31650491 31650573 -110620871 - MIR SINE MIR -60 148 68 245 298 149 35 chr9 31650872 31651013 -110620431 + MIR3 SINE MIR 37 193 -15 233 279 96 67 chr9 31651372 31651476 -110619968 - MIR3 SINE MIR -53 155 49 989 249 0 0 chr9 31651730 31651931 -110619513 - MER58A DNA MER1_type -15 209 9 291 391 8 0 chr9 31652373 31652501 -110618943 - L2 LINE L2 -225 3047 2919 1062 270 61 19 chr9 31652968 31653327 -110618117 - L1ME1 LINE L1 -7 6159 5786 200 185 19 0 chr9 31653723 31653777 -110617667 + CT-rich Low_complexity Low_complexity 4 58 0 1919 128 0 11 chr9 31653787 31654061 -110617383 - AluSc SINE Alu -38 271 1 1083 209 82 30 chr9 31655096 31655364 -110616080 + AluJo SINE Alu 5 286 -16 535 162 26 8 chr9 31655714 31655831 -110615613 + L1MA7 LINE L1 6168 6286 -5 253 306 61 96 chr9 31656289 31656550 -110614894 + L3 LINE CR1 934 1185 -392 9886 193 31 72 chr9 31656642 31659912 -110611532 - L1PB1 LINE L1 -1 6866 3876 307 148 0 0 chr9 31659912 31659966 -110611478 - L1PB4 LINE L1 -4 6152 6099 9886 193 31 72 chr9 31659966 31662640 -110608804 - L1PB1 LINE L1 -2991 3876 1093 3311 241 65 11 chr9 31662647 31663631 -110607813 - L1PB1 LINE L1 -5821 1042 6 1351 211 43 19 chr9 31666358 31666680 -110604764 - MER2 DNA MER2_type -1 344 15 245 367 129 11 chr9 31667223 31667602 -110603842 + L2 LINE L2 2065 2488 -826 1451 220 13 19 chr9 31667975 31668288 -110603156 + AluJo SINE Alu 1 311 -1 602 268 19 131 chr9 31668471 31668892 -110602552 + MLT1A2 LTR MaLR 1 374 0 312 240 130 27 chr9 31669243 31669389 -110602055 + MLT1L LTR MaLR 455 615 0 4468 79 12 3 chr9 31669723 31670328 -110601116 - L1PA11 LINE L1 -6 6168 5559 21 0 0 0 chr9 31670651 31670672 -110600772 + AT_rich Low_complexity Low_complexity 1 21 0 356 387 86 0 chr9 31670810 31670996 -110600448 - MIR SINE MIR -57 205 4 538 335 146 29 chr9 31673275 31673767 -110597677 + ERVL LTR ERVL 1872 2421 -3343 945 236 69 10 chr9 31673951 31674364 -110597080 - MLT1D LTR MaLR 0 505 22 2006 78 20 0 chr9 31674647 31674902 -110596542 + AluSc SINE Alu 23 282 -27 275 256 56 22 chr9 31675315 31675405 -110596039 + ERVL LTR ERVL 4716 4808 -956 3281 83 7 0 chr9 31675972 31676416 -110595028 - L1PA10 LINE L1 -155 6013 5567 784 87 0 0 chr9 31676416 31676519 -110594925 + L1PA10 LINE L1 6050 6152 -16 374 38 0 19 chr9 31676628 31676681 -110594763 + (TA)n Simple_repeat Simple_repeat 2 53 0 24 32 0 0 chr9 31677267 31677298 -110594146 + AT_rich Low_complexity Low_complexity 1 31 0 515 298 78 55 chr9 31678228 31678608 -110592836 + Charlie7 DNA MER1_type 1 396 -2216 2159 122 6 3 chr9 31678608 31678920 -110592524 - AluSq SINE Alu 0 313 1 515 298 78 55 chr9 31678920 31679026 -110592418 + Charlie7 DNA MER1_type 396 498 -2114 216 0 0 0 chr9 31679153 31679177 -110592267 + (GA)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr9 31679841 31679866 -110591578 + AT_rich Low_complexity Low_complexity 1 25 0 962 299 80 35 chr9 31679935 31680137 -110591307 + HsTC2a DNA Tc2 4 196 -1704 189 74 0 0 chr9 31680137 31680164 -110591280 + (CA)n Simple_repeat Simple_repeat 2 28 0 962 299 80 35 chr9 31680164 31680527 -110590917 + HsTC2a DNA Tc2 196 594 -150 3347 148 33 7 chr9 31680527 31681110 -110590334 + L1PA16 LINE L1 5339 5936 -230 611 152 0 0 chr9 31681110 31681202 -110590242 + AluJ/FLAM SINE Alu 1 92 -220 639 201 6 41 chr9 31681309 31681478 -110589966 + L1PA16 LINE L1 6004 6166 0 926 216 12 66 chr9 31683597 31683838 -110587606 - MLT1B LTR MaLR -20 370 143 1986 245 18 16 chr9 31684208 31684702 -110586742 + MER41E LTR ERV1 13 507 -5 446 169 0 0 chr9 31684707 31684784 -110586660 - MLT1B LTR MaLR -242 148 72 254 197 98 0 chr9 31684785 31684846 -110586598 - L1 LINE L1 -1867 4279 4213 1244 157 0 5 chr9 31684847 31685045 -110586399 + LTR29 LTR ERV1 426 622 0 1014 206 174 82 chr9 31685262 31685578 -110585866 + MER2 DNA MER2_type 1 345 0 325 377 0 9 chr9 31685828 31685934 -110585510 + L2 LINE L2 3158 3262 -10 1331 100 3 19 chr9 31686028 31686272 -110585172 + L1PA8 LINE L1 5290 5527 -627 1351 92 0 73 chr9 31686272 31686490 -110584954 - AluY SINE Alu -10 301 100 4877 79 3 2 chr9 31686490 31687135 -110584309 + L1PA8 LINE L1 5520 6165 -7 338 330 9 38 chr9 31687360 31687466 -110583978 + LTR67 LTR ERVL 88 190 -367 243 357 31 0 chr9 31687587 31687685 -110583759 + LTR67 LTR ERVL 371 471 -86 262 333 38 50 chr9 31687767 31687926 -110583518 + L2 LINE L2 2198 2354 -960 640 247 163 0 chr9 31688057 31688235 -110583209 + MER3 DNA MER1_type 3 209 0 437 186 0 12 chr9 31688871 31688957 -110582487 - MER58 DNA MER1_type 0 2420 2336 300 348 33 0 chr9 31688971 31689063 -110582381 - MER58 DNA MER1_type -2324 96 2 2228 105 3 7 chr9 31689739 31690044 -110581400 - AluSc SINE Alu -5 304 1 1652 216 33 71 chr9 31690162 31690482 -110580962 - LTR38 LTR ERV1 0 556 266 2219 91 3 3 chr9 31690482 31690778 -110580666 - AluSg SINE Alu -14 296 1 1652 216 33 71 chr9 31690778 31691035 -110580409 - LTR38 LTR ERV1 -290 266 1 188 100 25 0 chr9 31691460 31691500 -110579944 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 364 239 60 42 chr9 31692237 31692404 -110579040 - MER21B-int LTR ERV1 -5068 1608 1439 2187 191 49 71 chr9 31693020 31693555 -110577889 - MER21B-int LTR ERV1 -1107 679 157 969 186 31 62 chr9 31693707 31693933 -110577511 + MSTB-int LTR MaLR 1433 1651 0 2180 188 44 5 chr9 31693933 31694343 -110577101 + MSTB LTR MaLR 1 426 0 26 50 0 0 chr9 31694675 31694715 -110576729 + AT_rich Low_complexity Low_complexity 1 40 0 1737 338 56 30 chr9 31695906 31696784 -110574660 + L1M4b LINE L1 20 920 -5939 186 171 0 0 chr9 31696805 31696846 -110574598 + G-rich Low_complexity Low_complexity 1 41 0 369 352 62 6 chr9 31696960 31697122 -110574322 - L1M4b LINE L1 -6274 585 415 701 232 72 91 chr9 31697132 31697669 -110573775 + L1M4b LINE L1 899 1487 -5372 1836 294 53 21 chr9 31697720 31698610 -110572834 + L1M4b LINE L1 1489 2406 -4553 282 200 17 0 chr9 31698928 31698988 -110572456 + L1M4b LINE L1 4002 4062 -2895 339 44 0 0 chr9 31699033 31699078 -110572366 + (CA)n Simple_repeat Simple_repeat 2 46 0 292 321 52 52 chr9 31699665 31699858 -110571586 - L1ME3A LINE L1 -16 6154 5962 796 269 34 24 chr9 31699992 31700286 -110571158 - L1ME3A LINE L1 -269 5901 5605 1163 272 60 99 chr9 31700294 31701014 -110570430 - MER21B LTR ERV1 -150 713 22 478 251 33 107 chr9 31701050 31701416 -110570028 - L1ME3A LINE L1 -577 5593 5255 2322 70 15 12 chr9 31701543 31701871 -110569573 + L1PA7 LINE L1 5819 6147 -7 794 334 58 33 chr9 31704347 31704712 -110566732 + Zaphod DNA AcHobo 1 374 -3657 22 35 0 0 chr9 31705030 31705059 -110566385 + AT_rich Low_complexity Low_complexity 1 29 0 715 215 35 56 chr9 31705063 31705351 -110566093 + Zaphod DNA AcHobo 2024 2305 -1726 1799 259 98 40 chr9 31706169 31707331 -110564113 - L1ME2 LINE L1 -10 6154 4920 971 186 0 54 chr9 31707350 31707554 -110563890 - AluJb SINE Alu -83 229 37 299 286 41 10 chr9 31707555 31707653 -110563791 - L1ME2 LINE L1 -1977 4169 4069 219 294 0 59 chr9 31707742 31707827 -110563617 - L2 LINE L2 0 3313 3234 24 67 0 0 chr9 31708558 31708603 -110562841 + AT_rich Low_complexity Low_complexity 1 45 0 1021 273 35 20 chr9 31709004 31709352 -110562092 - LTR38 LTR ERV1 -202 354 2 411 318 123 68 chr9 31709659 31710231 -110561213 - L1 LINE L1 -1790 4356 3743 6472 61 16 2 chr9 31710291 31711317 -110560127 - L1P2 LINE L1 -592 5562 4524 4809 184 13 15 chr9 31711301 31712279 -110559165 - L1PA13 LINE L1 -4489 2309 1396 * 883 274 77 10 chr9 31712289 31713400 -110558044 - L1PA13 LINE L1 -5537 1250 24 2000 142 51 20 chr9 31714652 31715005 -110556439 - THE1B LTR MaLR 0 364 1 13694 46 9 1 chr9 31715498 31717987 -110553457 + L1PA5 LINE L1 3653 6149 -5 363 23 0 0 chr9 31721271 31721315 -110550129 + (TG)n Simple_repeat Simple_repeat 1 44 0 4544 135 16 60 chr9 31721541 31722405 -110549039 + L1PA16 LINE L1 5341 6166 0 2112 120 0 7 chr9 31722861 31723161 -110548283 + AluSx SINE Alu 3 300 -12 356 271 0 74 chr9 31723167 31723289 -110548155 + MIR SINE MIR 29 141 -121 21 71 0 0 chr9 31723870 31723912 -110547532 + AT_rich Low_complexity Low_complexity 1 42 0 38 89 0 0 chr9 31725114 31725215 -110546229 + AT_rich Low_complexity Low_complexity 1 101 0 184 130 130 37 chr9 31725723 31725777 -110545667 + MER5A DNA MER1_type 20 78 -111 1012 254 107 80 chr9 31727610 31728170 -110543274 - MLT1E1 LTR MaLR -4 650 76 217 256 23 0 chr9 31728188 31728274 -110543170 + (TA)n Simple_repeat Simple_repeat 2 89 0 267 103 0 0 chr9 31728274 31728313 -110543131 + (CA)n Simple_repeat Simple_repeat 2 40 0 3181 194 5 7 chr9 31728327 31729076 -110542368 - L1P LINE L1 -776 5375 4626 4771 89 36 23 chr9 31729076 31729804 -110541640 + L1PB1 LINE L1 5413 6149 -2 3181 194 5 7 chr9 31729804 31729815 -110541629 - L1P LINE L1 -1525 4626 4616 212 100 25 0 chr9 31729841 31729881 -110541563 + (TA)n Simple_repeat Simple_repeat 1 41 0 931 244 39 54 chr9 31730063 31730395 -110541049 + MER58B DNA MER1_type 6 332 -9 419 190 58 50 chr9 31732896 31733017 -110538427 + L1MA9 LINE L1 6187 6308 -4 439 281 23 6 chr9 31733194 31733365 -110538079 - MER104 DNA Tc2 -2 178 5 322 285 32 32 chr9 31736270 31736393 -110535051 + L2 LINE L2 3191 3313 0 26 30 0 0 chr9 31736648 31736681 -110534763 + AT_rich Low_complexity Low_complexity 1 33 0 2915 138 8 4 chr9 31737073 31737544 -110533900 - L1PA16 LINE L1 -5 6161 5689 208 176 0 20 chr9 31737668 31737719 -110533725 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 3881 192 99 76 chr9 31937750 31938850 -110332594 - MER52A LTR ERV1 -73 1205 8 212 210 16 65 chr9 31939119 31939181 -110332263 - MIR SINE MIR -27 235 177 928 281 66 47 chr9 31939277 31939827 -110331617 - L1MEc LINE L1 -3594 2621 2077 2088 109 0 32 chr9 31939827 31940140 -110331304 - AluSc SINE Alu -6 303 1 928 281 66 47 chr9 31940140 31940627 -110330817 - L1MEc LINE L1 -4138 2077 1600 2509 208 27 6 chr9 31940628 31941142 -110330302 + Tigger6a DNA MER2_type 1 525 -558 2038 129 3 29 chr9 31942262 31942571 -110328873 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr9 31942957 31942980 -110328464 + AT_rich Low_complexity Low_complexity 1 23 0 1185 204 112 8 chr9 31943391 31943443 -110328001 - L1M4 LINE L1 -852 5294 5249 253 0 54 0 chr9 31943443 31943480 -110327964 + (TA)n Simple_repeat Simple_repeat 1 39 0 1185 204 112 8 chr9 31943480 31943794 -110327650 - L1M4 LINE L1 -897 5249 4890 234 62 0 0 chr9 31944604 31944636 -110326808 + (A)n Simple_repeat Simple_repeat 1 32 0 331 240 124 41 chr9 31945082 31945203 -110326241 - MIR3 SINE MIR -40 168 38 21 0 0 0 chr9 31945852 31945873 -110325571 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr9 31945922 31945981 -110325463 + AT_rich Low_complexity Low_complexity 1 59 0 647 292 64 11 chr9 31947748 31948012 -110323432 - L1MEc LINE L1 -2321 3808 3531 2105 127 0 16 chr9 31948088 31948439 -110323005 - AluSg SINE Alu 0 346 1 21 36 0 0 chr9 31948553 31948581 -110322863 + AT_rich Low_complexity Low_complexity 1 28 0 494 275 79 69 chr9 31948642 31949115 -110322329 - L1MEc LINE L1 -2717 3412 2945 3744 183 17 10 chr9 31949115 31949814 -110321630 - MER44D DNA MER2_type 0 705 2 494 275 79 69 chr9 31949814 31949908 -110321536 - L1MEc LINE L1 -3184 2945 2853 1878 112 4 4 chr9 31949908 31950167 -110321277 - AluSx SINE Alu -16 296 38 494 275 79 69 chr9 31950167 31950542 -110320902 - L1MEc LINE L1 -3276 2853 2459 231 269 30 0 chr9 31950542 31950609 -110320835 + MER3 DNA MER1_type 35 103 -106 * 719 203 158 6 chr9 31950560 31950737 -110320707 - MER3 DNA MER1_type -5 204 1 441 325 20 16 chr9 31950744 31950993 -110320451 - L1MEc LINE L1 -3683 2446 2197 201 208 21 0 chr9 31951372 31951420 -110320024 + (TA)n Simple_repeat Simple_repeat 2 50 0 417 307 113 56 chr9 31951477 31951974 -110319470 - L1MEc LINE L1 -4453 1676 1196 2057 183 66 30 chr9 31952000 31952470 -110318974 - LTR45B LTR ERV1 0 489 3 1641 186 75 6 chr9 31952700 31953022 -110318422 - MER101 LTR ERV1 -107 367 24 339 327 30 20 chr9 31953600 31953799 -110317645 - MER70-int LTR ERVL -356 4667 4467 981 133 62 71 chr9 31954659 31954869 -110316575 + MER30 DNA MER1_type 22 229 -1 528 275 12 24 chr9 31955424 31955592 -110315852 - LTR49-int LTR ERV1 -513 4423 3607 293 64 149 0 chr9 31955604 31955651 -110315793 - LTR49-int LTR ERV1 -936 5395 5342 397 315 95 40 chr9 31955668 31955941 -110315503 - L1MEc LINE L1 -4971 1148 861 318 270 113 31 chr9 31956610 31956769 -110314675 - L1MEc LINE L1 -5903 216 45 1804 268 72 21 chr9 31958997 31959567 -110311877 - MLT1E2 LTR MaLR 0 626 28 4324 92 15 0 chr9 31960882 31961653 -110309791 - L1P3 LINE L1 -595 5559 4789 311 181 48 0 chr9 31961653 31961736 -110309708 - L1MB1 LINE L1 -59 6109 4741 201 74 0 0 chr9 31961952 31961979 -110309465 + (TG)n Simple_repeat Simple_repeat 2 28 0 377 144 19 165 chr9 31962589 31962730 -110308714 - THE1C LTR MaLR -12 363 232 304 313 0 0 chr9 31962712 31962792 -110308652 + MLT1E3 LTR MaLR 300 379 -245 * 1210 158 34 62 chr9 31962790 31963082 -110308362 - THE1C LTR MaLR -91 284 1 48 88 0 0 chr9 31963124 31963249 -110308195 + AT_rich Low_complexity Low_complexity 1 125 0 195 239 0 0 chr9 31963302 31963348 -110308096 - L2 LINE L2 -18 3254 3209 1570 159 3 3 chr9 31963513 31963533 -110307911 - L1MA6 LINE L1 -323 5977 5958 937 248 49 16 chr9 31963533 31963840 -110307604 - L1PA15 LINE L1 -200 5965 5649 1310 241 129 6 chr9 31965070 31965418 -110306026 + MSTD LTR MaLR 6 396 0 1450 259 25 32 chr9 31965422 31965645 -110305799 + MSTD-int LTR MaLR 4 227 -1508 7702 23 0 0 chr9 31965645 31967325 -110304119 + L1PA3 LINE L1 4475 6152 -3 1450 259 25 32 chr9 31967325 31967508 -110303936 + MSTD-int LTR MaLR 227 409 -1326 1904 166 3 20 chr9 31967508 31967851 -110303593 + MER1B DNA MER1_type 1 337 0 1450 259 25 32 chr9 31967851 31967880 -110303564 + MSTD-int LTR MaLR 409 437 -1298 381 247 0 0 chr9 31968324 31968409 -110303035 + MSTD-int LTR MaLR 427 511 -1224 1713 137 0 87 chr9 31968409 31968731 -110302713 - MER4A LTR ERV1 0 664 371 375 173 210 0 chr9 31968769 31968850 -110302594 - MER4A LTR ERV1 -566 98 1 3551 228 42 130 chr9 31968850 31968946 -110302498 + MSTD-int LTR MaLR 508 611 -1124 342 0 0 0 chr9 31968946 31968984 -110302460 + (TG)n Simple_repeat Simple_repeat 2 39 0 3551 228 42 130 chr9 31968984 31969478 -110301966 + MSTD-int LTR MaLR 611 1147 -588 423 0 0 0 chr9 31969478 31969525 -110301919 + (TA)n Simple_repeat Simple_repeat 1 47 0 6839 53 0 8 chr9 31969527 31970498 -110300946 - L1PA6 LINE L1 -18 6136 5160 3551 228 42 130 chr9 31970498 31971249 -110300195 + MSTD-int LTR MaLR 1148 1735 0 1514 227 55 23 chr9 31971249 31971633 -110299811 + MSTD LTR MaLR 1 396 0 5414 158 45 69 chr9 31971916 31974034 -110297410 - L1MA8 LINE L1 -6 6285 4223 22 56 0 0 chr9 31974175 31974211 -110297233 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr9 31974798 31974834 -110296610 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 31975478 31975499 -110295945 + AT_rich Low_complexity Low_complexity 1 21 0 335 341 95 14 chr9 31975614 31975825 -110295619 - MIR SINE MIR -22 240 13 36 0 0 0 chr9 31977947 31977983 -110293461 + AT_rich Low_complexity Low_complexity 1 36 0 1509 207 7 7 chr9 31978141 31978446 -110292998 - AluJb SINE Alu -7 305 1 378 156 146 21 chr9 31979911 31980007 -110291437 + L1MB1 LINE L1 6060 6167 -1 575 76 13 0 chr9 31980170 31980249 -110291195 - MADE1 DNA Mariner 0 80 1 21 57 0 0 chr9 31980331 31980366 -110291078 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr9 31980591 31980629 -110290815 + AT_rich Low_complexity Low_complexity 1 38 0 382 156 78 12 chr9 31981149 31981316 -110290128 + (TA)n Simple_repeat Simple_repeat 2 179 0 2467 40 3 3 chr9 31982341 31982637 -110288807 + AluY SINE Alu 1 296 -15 198 0 0 0 chr9 31983020 31983042 -110288402 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2868 36 0 17 chr9 31983084 31983443 -110288001 - L1PA5 LINE L1 -3 6151 5799 248 217 72 14 chr9 31984009 31984078 -110287366 - MIR SINE MIR -70 192 120 301 168 50 25 chr9 31984206 31984325 -110287119 + (TA)n Simple_repeat Simple_repeat 2 123 0 189 70 105 0 chr9 31984338 31984395 -110287049 + (TA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr9 31987336 31987358 -110284086 + AT_rich Low_complexity Low_complexity 1 22 0 2090 228 16 6 chr9 31988438 31988942 -110282502 - L1MC3 LINE L1 0 7785 7277 5468 76 1 3 chr9 31988961 31989685 -110281759 - L1PA8 LINE L1 0 6172 5450 1001 227 22 13 chr9 31989688 31989913 -110281531 - L1MC3 LINE L1 -1258 6527 6301 2124 106 11 0 chr9 31990471 31990755 -110280689 + AluSg SINE Alu 12 298 -12 185 341 30 30 chr9 31990897 31991032 -110280412 + MIR SINE MIR 118 252 -10 2531 196 121 16 chr9 31991033 31991590 -110279854 + MER44D DNA MER2_type 1 631 -1956 1960 153 97 3 chr9 31991590 31991981 -110279463 - MSTA LTR MaLR 0 428 1 2531 196 121 16 chr9 31991981 31992044 -110279400 + MER44D DNA MER2_type 631 686 -19 269 355 16 8 chr9 31992403 31992527 -110278917 + L2 LINE L2 3189 3313 0 854 266 77 0 chr9 31992727 31992934 -110278510 + MER58A DNA MER1_type 1 223 -1 472 315 73 8 chr9 31993129 31993389 -110278055 - MARNA DNA Mariner -192 394 118 351 248 9 26 chr9 31994818 31994931 -110276513 - MARNA DNA Mariner -190 396 286 364 231 28 19 chr9 31994947 31995055 -110276389 - L1ME LINE L1 -584 5578 5470 2202 163 33 32 chr9 31995367 31995917 -110275527 - MLT2A2 LTR ERVL 0 554 1 182 345 52 0 chr9 31995972 31996030 -110275414 + L2 LINE L2 3157 3217 -55 201 328 0 0 chr9 31996177 31996238 -110275206 - L2 LINE L2 -239 3074 3014 371 182 30 0 chr9 31996444 31996510 -110274934 - MLT1C LTR MaLR -313 154 87 1865 234 36 5 chr9 31997119 31997530 -110273914 - MLT1C LTR MaLR 0 467 44 1470 218 71 21 chr9 31997532 31997571 -110273873 - MLT2B2 LTR ERVL 0 554 518 677 29 48 0 chr9 31997571 31997674 -110273770 + (TAGA)n Simple_repeat Simple_repeat 1 108 0 1470 218 71 21 chr9 31997674 31998077 -110273367 - MLT2B2 LTR ERVL -36 518 7 21 0 0 0 chr9 31998464 31998485 -110272959 + AT_rich Low_complexity Low_complexity 1 21 0 185 443 30 8 chr9 31998629 31998760 -110272684 - L2 LINE L2 -5 3267 3134 198 103 0 0 chr9 31998768 31998797 -110272647 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 448 259 193 0 chr9 31998828 31998963 -110272481 - MER5A DNA MER1_type -1 188 28 2566 113 0 16 chr9 31999147 31999354 -110272090 - THE1B LTR MaLR 0 364 162 1899 148 0 0 chr9 31999354 31999667 -110271777 + AluSx SINE Alu 1 313 0 2566 113 0 16 chr9 31999667 31999827 -110271617 - THE1B LTR MaLR -202 162 1 9596 119 61 8 chr9 31999827 32001327 -110270117 - THE1B-int LTR MaLR 0 1580 1 2561 110 3 0 chr9 32001335 32001690 -110269754 - THE1B LTR MaLR -8 356 1 1400 66 0 2 chr9 32001793 32002052 -110269392 - AluY SINE Alu -4 307 1 359 309 104 49 chr9 32002534 32002764 -110268680 - Charlie7 DNA MER1_type -1918 694 478 1788 158 0 37 chr9 32002764 32003062 -110268382 - AluJb SINE Alu -24 288 2 359 309 104 49 chr9 32003062 32003358 -110268086 - Charlie7 DNA MER1_type -2134 478 139 333 0 0 0 chr9 32003358 32003395 -110268049 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr9 32003544 32003565 -110267879 + AT_rich Low_complexity Low_complexity 1 21 0 262 267 100 44 chr9 32004676 32004766 -110266678 + MIR SINE MIR 60 154 -108 1261 294 103 58 chr9 32004819 32005602 -110265842 + L2 LINE L2 2066 2884 -430 1759 237 51 32 chr9 32005963 32006456 -110264988 - MLT1D LTR MaLR -3 502 1 201 338 0 14 chr9 32006459 32006530 -110264914 + L2 LINE L2 3201 3270 -2 523 328 29 29 chr9 32006683 32006887 -110264557 - MIR SINE MIR -27 235 32 272 312 65 0 chr9 32007518 32007611 -110263833 - L2 LINE L2 -1 3312 3214 670 288 62 78 chr9 32007851 32008302 -110263142 - MLT1J2 LTR MaLR 0 450 7 23 78 0 0 chr9 32008823 32008874 -110262570 + AT_rich Low_complexity Low_complexity 1 51 0 231 218 0 0 chr9 32009436 32009491 -110261953 + T-rich Low_complexity Low_complexity 1 55 0 21 57 0 0 chr9 32009673 32009708 -110261736 + AT_rich Low_complexity Low_complexity 1 35 0 229 301 101 32 chr9 32009935 32010343 -110261101 + L1ME4a LINE L1 5562 5997 -124 424 347 141 24 chr9 32010619 32011037 -110260407 - L3b LINE CR1 -9 1574 1108 25 0 0 0 chr9 32011165 32011190 -110260254 + AT_rich Low_complexity Low_complexity 1 25 0 190 333 59 52 chr9 32011307 32011460 -110259984 + L2 LINE L2 2596 2749 -565 23 0 0 0 chr9 32011530 32011553 -110259891 + AT_rich Low_complexity Low_complexity 1 23 0 281 45 0 23 chr9 32011813 32011857 -110259587 + (TA)n Simple_repeat Simple_repeat 1 43 0 1920 262 49 43 chr9 32011928 32012772 -110258672 - L1ME1 LINE L1 -49 6117 5270 2907 239 68 21 chr9 32012801 32013621 -110257823 + L1MD2 LINE L1 5498 6356 -3 4435 189 64 5 chr9 32013830 32014764 -110256680 - L1 LINE L1 -1098 5048 4060 1189 198 16 35 chr9 32014764 32015078 -110256366 + L1MA7 LINE L1 5974 6281 -10 24 77 0 0 chr9 32015332 32015384 -110256060 + AT_rich Low_complexity Low_complexity 1 52 0 972 213 147 21 chr9 32015396 32015745 -110255699 - MLT2B1 LTR ERVL -44 476 1 22 56 0 0 chr9 32016550 32016586 -110254858 + AT_rich Low_complexity Low_complexity 1 36 0 575 278 6 6 chr9 32016859 32017021 -110254423 - MER52A LTR ERV1 -1 1754 1593 * 961 237 112 104 chr9 32017013 32017740 -110253704 - MER52A LTR ERV1 -147 489 2 24 53 0 0 chr9 32018424 32018462 -110252982 + AT_rich Low_complexity Low_complexity 1 38 0 456 318 60 15 chr9 32019508 32019709 -110251735 + MIR SINE MIR 49 258 -4 1784 166 0 0 chr9 32020056 32020393 -110251051 - AluJo SINE Alu 0 337 1 1941 124 3 17 chr9 32020492 32020790 -110250654 + AluSx SINE Alu 1 294 -18 186 43 0 0 chr9 32022821 32022844 -110248600 + (CA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 32023111 32023134 -110248310 + AT_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr9 32023194 32023224 -110248220 + (TG)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr9 32023247 32023275 -110248169 + AT_rich Low_complexity Low_complexity 1 28 0 334 311 6 37 chr9 32024212 32024398 -110247046 + CT-rich Low_complexity Low_complexity 1 180 0 655 133 0 31 chr9 32024475 32024603 -110246841 - L1MA9 LINE L1 -1 6311 6188 928 283 72 74 chr9 32025471 32026162 -110245282 + LTR50 LTR ERVL 10 793 -2 439 361 56 16 chr9 32026164 32026413 -110245031 + L2 LINE L2 3055 3313 0 320 268 103 73 chr9 32026419 32026759 -110244685 - HAL1b LINE L1 -13 1335 986 23 54 0 0 chr9 32028031 32028068 -110243376 + AT_rich Low_complexity Low_complexity 1 37 0 301 350 66 10 chr9 32028219 32028416 -110243028 - MIR SINE MIR -8 254 47 226 231 154 0 chr9 32028453 32028518 -110242926 + MIR3 SINE MIR 125 199 -9 2343 70 0 0 chr9 32028953 32029255 -110242189 - AluY SINE Alu -9 302 1 24 53 0 0 chr9 32029371 32029409 -110242035 + AT_rich Low_complexity Low_complexity 1 38 0 309 26 0 0 chr9 32029452 32029490 -110241954 + (CA)n Simple_repeat Simple_repeat 2 39 0 28 0 0 0 chr9 32030187 32030215 -110241229 + AT_rich Low_complexity Low_complexity 1 28 0 1889 101 4 40 chr9 32030215 32030492 -110240952 - AluSq SINE Alu -24 289 23 415 284 89 71 chr9 32030820 32031102 -110240342 - MLT1L LTR MaLR -185 430 144 399 190 17 35 chr9 32033407 32033502 -110237942 + (TA)n Simple_repeat Simple_repeat 1 93 -78 2257 192 9 9 chr9 32033502 32033934 -110237510 - Tigger2a DNA MER2_type 0 434 3 399 190 17 35 chr9 32033934 32034012 -110237432 + (TA)n Simple_repeat Simple_repeat 93 171 0 326 258 30 53 chr9 32034048 32034180 -110237264 - L1MC4 LINE L1 -1326 6716 6588 2544 7 0 7 chr9 32035702 32035987 -110235457 + AluYa5 SINE Alu 29 311 0 705 316 71 21 chr9 32036561 32036900 -110234544 - MER110 LTR ERV1 -127 364 9 4321 225 86 53 chr9 32037011 32037729 -110233715 + L1MC3 LINE L1 5420 6113 -1672 2157 121 0 7 chr9 32037729 32038027 -110233417 - AluSq SINE Alu -17 296 1 4321 225 86 53 chr9 32038027 32038423 -110233021 + L1MC3 LINE L1 6113 6593 -1192 2132 100 3 17 chr9 32038423 32038722 -110232722 + AluSp SINE Alu 12 306 -7 4321 225 86 53 chr9 32038722 32039014 -110232430 + L1MC3 LINE L1 6593 6874 -911 1308 206 73 6 chr9 32039046 32039376 -110232068 + L1MB1 LINE L1 4634 4985 -1161 2099 101 0 3 chr9 32039438 32039724 -110231720 + AluSx SINE Alu 1 285 -27 4235 200 34 8 chr9 32039738 32040885 -110230559 + L1MB1 LINE L1 4984 6165 -3 2351 217 71 26 chr9 32041063 32041708 -110229736 + L1MC3 LINE L1 6856 7529 -256 2085 158 64 33 chr9 32042516 32043031 -110228413 - MLT2A2 LTR ERVL 0 554 1 331 185 0 21 chr9 32043502 32043589 -110227855 - pTR5 LTR ERV1 -22 692 78 234 112 92 122 chr9 32043596 32043694 -110227750 - MER61E LTR ERV1 -103 466 372 1909 216 28 90 chr9 32044665 32044746 -110226698 - MLT2B3 LTR ERVL -10 544 460 4281 125 37 71 chr9 32044746 32045552 -110225892 + MER4E LTR ERV1 1 779 0 1909 216 28 90 chr9 32045552 32046050 -110225394 - MLT2B3 LTR ERVL -94 460 1 832 187 0 13 chr9 32046121 32046271 -110225173 - FRAM SINE Alu -26 150 3 267 133 0 0 chr9 32046286 32046331 -110225113 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 214 307 86 29 chr9 32046355 32046495 -110224949 - MIR3 SINE MIR -60 148 1 232 252 130 0 chr9 32047047 32047162 -110224282 - MIR SINE MIR -85 177 48 188 298 0 0 chr9 32047251 32047298 -110224146 + L3 LINE CR1 1530 1576 -1 451 180 156 31 chr9 32047404 32047534 -110223910 + MIR SINE MIR 49 188 -63 229 238 16 16 chr9 32048537 32048600 -110222844 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 25 0 0 0 chr9 32048636 32048661 -110222783 + AT_rich Low_complexity Low_complexity 1 25 0 1654 156 9 61 chr9 32048853 32049179 -110222265 + AluJo SINE Alu 1 309 -3 1163 174 56 77 chr9 32049249 32049536 -110221908 + AluJo SINE Alu 12 292 -20 231 267 0 0 chr9 32049537 32049627 -110221817 + L1MC4 LINE L1 6614 6703 -1339 261 0 0 0 chr9 32049627 32049656 -110221788 + (TA)n Simple_repeat Simple_repeat 1 29 0 235 185 37 0 chr9 32049722 32049776 -110221668 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 189 286 0 0 chr9 32051119 32051168 -110220276 + MER5A DNA MER1_type 27 75 -114 1146 283 106 9 chr9 32051626 32052079 -110219365 + L1ME3 LINE L1 5596 6092 -70 21 82 0 0 chr9 32052432 32052481 -110218963 + AT_rich Low_complexity Low_complexity 1 49 0 926 267 11 40 chr9 32052893 32053170 -110218274 - MLT1A2 LTR MaLR 0 374 106 219 333 37 28 chr9 32054126 32054234 -110217210 + L2 LINE L2 2893 3001 -271 415 316 99 27 chr9 32054572 32054835 -110216609 - HAL1 LINE L1 -2215 292 11 951 270 63 28 chr9 32055202 32055521 -110215923 + MLT1E2 LTR MaLR 1 330 -294 2024 163 44 38 chr9 32055521 32056065 -110215379 - MLT2A2 LTR ERVL 0 554 1 13462 99 11 2 chr9 32056065 32057910 -110213534 - HERVL-A2 LTR ERVL 0 5654 3793 4047 93 2 18 chr9 32057901 32058460 -110212984 - HERVL-A2 LTR ERVL -2091 3563 3014 * 1221 189 39 56 chr9 32058464 32058770 -110212674 + MLT1E2 LTR MaLR 326 626 0 2351 67 0 10 chr9 32059201 32059501 -110211943 - AluY SINE Alu -14 297 1 2957 163 2 4 chr9 32060137 32060635 -110210809 + LOR1a LTR ERV1 1 497 0 220 306 90 0 chr9 32061101 32061212 -110210232 - MIR SINE MIR -65 197 77 273 316 34 8 chr9 32061594 32061711 -110209733 - MIR SINE MIR -25 237 118 21 36 0 0 chr9 32061742 32061770 -110209674 + AT_rich Low_complexity Low_complexity 1 28 0 1175 196 9 0 chr9 32062784 32062998 -110208446 - MLT1B LTR MaLR 0 390 175 193 241 46 81 chr9 32064075 32064162 -110207282 - MIR SINE MIR -73 189 106 198 333 83 8 chr9 32064558 32064678 -110206766 - MIR SINE MIR -62 200 72 26 0 0 0 chr9 32064908 32064934 -110206510 + AT_rich Low_complexity Low_complexity 1 26 0 227 91 0 0 chr9 32065981 32066014 -110205430 - L1MA4A LINE L1 -158 6145 6113 501 192 8 0 chr9 32066014 32066134 -110205310 + L1MA5 LINE L1 6180 6300 0 214 268 31 62 chr9 32066179 32066276 -110205168 - MIR SINE MIR -77 185 92 21 71 0 0 chr9 32066703 32066745 -110204699 + AT_rich Low_complexity Low_complexity 1 42 0 28 61 0 0 chr9 32067059 32067108 -110204336 + AT_rich Low_complexity Low_complexity 1 49 0 1047 176 5 5 chr9 32067339 32067538 -110203906 - L1 LINE L1 -1333 4813 4615 1312 240 23 31 chr9 32067540 32068019 -110203425 - L1 LINE L1 -1581 4565 4091 * 3947 197 21 50 chr9 32068017 32068408 -110203036 + L1MA10 LINE L1 5006 5407 -927 2159 104 16 0 chr9 32068408 32068715 -110202729 + AluSp SINE Alu 1 312 -1 3947 197 21 50 chr9 32068715 32069646 -110201798 + L1MA10 LINE L1 5407 6286 -48 332 237 58 45 chr9 32069645 32069801 -110201643 - L1MC3 LINE L1 -35 7750 7593 * 244 256 122 12 chr9 32069816 32069898 -110201546 - L1MC/D LINE L1 -2255 5530 5440 1934 149 32 115 chr9 32070109 32070398 -110201046 + Tigger2a DNA MER2_type 3 240 -2468 1058 138 15 36 chr9 32070398 32070593 -110200851 + L1PA15 LINE L1 5972 6162 -3 1934 149 32 115 chr9 32070593 32070774 -110200670 + Tigger2a DNA MER2_type 240 434 0 23 0 0 0 chr9 32070795 32070818 -110200626 + AT_rich Low_complexity Low_complexity 1 23 0 563 308 91 82 chr9 32071041 32071865 -110199579 - HAL1b LINE L1 -502 846 16 22 88 0 0 chr9 32072996 32073053 -110198391 + AT_rich Low_complexity Low_complexity 1 57 0 1705 189 3 17 chr9 32073445 32073742 -110197702 - AluJb SINE Alu -14 298 6 25 75 0 0 chr9 32075072 32075125 -110196319 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr9 32075235 32075257 -110196187 + AT_rich Low_complexity Low_complexity 1 22 0 42333 39 21 1 chr9 32075265 32081292 -110190152 + L1PA3 LINE L1 1 6151 -4 26 0 0 0 chr9 32081295 32081321 -110190123 + AT_rich Low_complexity Low_complexity 1 26 0 1427 256 46 38 chr9 32081414 32081914 -110189530 + MLT1D LTR MaLR 2 505 0 243 280 21 11 chr9 32082103 32082196 -110189248 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 2131 120 3 0 chr9 32082399 32082699 -110188745 - AluSg SINE Alu -9 301 1 257 385 50 0 chr9 32082714 32082875 -110188569 - MIR SINE MIR -44 218 50 1664 176 41 54 chr9 32083247 32083616 -110187828 + THE1B LTR MaLR 1 364 0 276 109 0 0 chr9 32084079 32084123 -110187321 - L1M2 LINE L1 -485 5671 5633 1591 159 3 39 chr9 32084124 32084432 -110187012 + L1PB4 LINE L1 5860 6156 0 26 64 0 0 chr9 32084822 32084869 -110186575 + AT_rich Low_complexity Low_complexity 1 47 0 53 40 0 0 chr9 32084978 32085052 -110186392 + AT_rich Low_complexity Low_complexity 1 74 0 2244 99 22 117 chr9 32085052 32085696 -110185748 - MER4B LTR ERV1 -37 742 3 2032 133 0 32 chr9 32085710 32086019 -110185425 + AluSx SINE Alu 1 299 -13 1416 187 47 0 chr9 32086038 32086295 -110185149 + AluSx SINE Alu 1 269 -43 31 68 0 0 chr9 32086295 32086354 -110185090 + AT_rich Low_complexity Low_complexity 1 59 0 286 287 51 56 chr9 32086853 32087048 -110184396 - L2 LINE L2 -106 3207 3014 * 1077 305 89 71 chr9 32087036 32087797 -110183647 - L2 LINE L2 -576 2738 1964 21 0 0 0 chr9 32087988 32088009 -110183435 + AT_rich Low_complexity Low_complexity 1 21 0 494 271 33 22 chr9 32088103 32088284 -110183160 + L2 LINE L2 2156 2338 -976 240 35 0 0 chr9 32089946 32089975 -110181469 + (CA)n Simple_repeat Simple_repeat 1 29 0 2590 151 17 2 chr9 32090359 32090776 -110180668 - MSTA LTR MaLR -5 423 1 827 172 19 6 chr9 32093184 32093341 -110178103 + L1MC2 LINE L1 6175 6333 -11 303 322 91 25 chr9 32094730 32094851 -110176593 - L2 LINE L2 -5 3267 3139 190 143 0 0 chr9 32095245 32095273 -110176171 - L2 LINE L2 -3 3269 3242 1416 226 32 87 chr9 32095386 32095855 -110175589 - LTR40b LTR ERVL -19 443 1 2106 116 0 6 chr9 32096685 32097003 -110174441 - L1PB1 LINE L1 -1 6150 5835 1606 303 115 17 chr9 32097036 32097756 -110173688 - L2 LINE L2 -737 2577 1787 325 292 33 42 chr9 32097835 32097955 -110173489 - L2 LINE L2 -3192 122 4 23 86 0 0 chr9 32100453 32100511 -110170933 + AT_rich Low_complexity Low_complexity 1 58 0 253 263 0 0 chr9 32100839 32100896 -110170548 + (TG)n Simple_repeat Simple_repeat 2 58 0 21 36 0 0 chr9 32101608 32101636 -110169808 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 32101877 32101900 -110169544 + AT_rich Low_complexity Low_complexity 1 23 0 194 328 17 17 chr9 32102586 32102644 -110168800 + L2 LINE L2 3154 3211 -61 1732 164 3 67 chr9 32102805 32103165 -110168279 - MER1B DNA MER1_type 0 337 1 424 131 37 9 chr9 32103298 32103405 -110168039 + (TA)n Simple_repeat Simple_repeat 1 110 0 308 248 19 57 chr9 32103413 32103518 -110167926 - L1MC4 LINE L1 -1339 6703 6603 28 0 0 0 chr9 32103634 32103662 -110167782 + AT_rich Low_complexity Low_complexity 1 28 0 10624 196 23 12 chr9 32104196 32107146 -110164298 + L1P5 LINE L1 2769 5753 -398 680 271 134 46 chr9 32107146 32107475 -110163969 + MLT2B1 LTR ERVL 116 483 -37 240 59 0 0 chr9 32107475 32107509 -110163935 + (TG)n Simple_repeat Simple_repeat 2 35 0 680 271 134 46 chr9 32107509 32107551 -110163893 + MLT2B1 LTR ERVL 483 520 0 2200 119 19 24 chr9 32108000 32108377 -110163067 + THE1C LTR MaLR 1 375 0 674 232 109 85 chr9 32108662 32109033 -110162411 + MER41B LTR ERV1 97 365 -113 498 279 11 37 chr9 32109025 32109215 -110162229 + MER66A LTR ERV1 285 469 -9 * 1978 160 13 16 chr9 32109305 32109681 -110161763 - THE1C LTR MaLR 0 375 1 498 269 82 22 chr9 32110002 32110184 -110161260 - MIR SINE MIR -68 194 2 26 93 0 0 chr9 32110687 32110762 -110160682 + AT_rich Low_complexity Low_complexity 1 75 0 1188 201 93 0 chr9 32111284 32111543 -110159901 + AluJb SINE Alu 2 284 -18 38 0 0 0 chr9 32111579 32111617 -110159827 + AT_rich Low_complexity Low_complexity 1 38 0 291 333 27 9 chr9 32112205 32112316 -110159128 - L2 LINE L2 -7 3306 3194 209 184 0 0 chr9 32112617 32112655 -110158789 - L2 LINE L2 -8 3305 3268 33 25 0 0 chr9 32112937 32112977 -110158467 + AT_rich Low_complexity Low_complexity 1 40 0 255 346 24 47 chr9 32113097 32113224 -110158220 - MER5A DNA MER1_type -25 164 41 3522 136 2 4 chr9 32113473 32114001 -110157443 + MER1A DNA MER1_type 1 527 0 538 305 40 35 chr9 32114287 32114487 -110156957 + MER63A DNA MER1_type 8 208 -2 279 376 47 7 chr9 32116361 32116510 -110154934 - MIR SINE MIR -87 175 21 12454 178 57 16 chr9 32118135 32118490 -110152954 - L1 LINE L1 -1110 6455 6116 1865 159 0 3 chr9 32118490 32118808 -110152636 - AluSx SINE Alu 0 312 3 12454 178 57 16 chr9 32118808 32121668 -110149776 - L1 LINE L1 -1449 6116 3102 657 251 63 31 chr9 32121670 32121957 -110149487 + L1M4 LINE L1 2429 2724 -3422 308 271 8 0 chr9 32121979 32122097 -110149347 + L1M4 LINE L1 2782 2900 -3246 357 198 188 10 chr9 32122247 32122343 -110149101 - LTR25 LTR ERV1 -260 534 422 483 190 58 0 chr9 32122503 32122610 -110148834 - MER61E LTR ERV1 -473 96 1 1353 255 31 12 chr9 32122612 32123031 -110148413 - L1M4 LINE L1 -3467 2679 2253 27 0 0 0 chr9 32123834 32123861 -110147583 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr9 32124526 32124555 -110146889 + AT_rich Low_complexity Low_complexity 1 29 0 315 0 0 0 chr9 32124650 32124685 -110146759 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1535 197 118 14 chr9 32125053 32125470 -110145974 + MLT1C LTR MaLR 6 465 -2 32 26 0 0 chr9 32126667 32126706 -110144738 + AT_rich Low_complexity Low_complexity 1 39 0 777 259 114 102 chr9 32126769 32127268 -110144176 - L1ME3A LINE L1 -27 6143 5639 380 253 79 33 chr9 32127259 32127500 -110143944 - L1MEc LINE L1 -3784 3157 2906 * 444 364 117 0 chr9 32127813 32128165 -110143279 - L1MEc LINE L1 -4576 2546 2154 4166 151 39 18 chr9 32128492 32129261 -110142183 - LTR1 LTR ERV1 0 785 1 324 270 31 86 chr9 32130260 32130345 -110141099 - MLT1J1 LTR MaLR -292 154 81 2030 113 0 86 chr9 32130345 32130681 -110140763 + AluSp SINE Alu 1 307 -6 324 270 31 86 chr9 32130681 32130758 -110140686 - MLT1J1 LTR MaLR -365 81 1 42 20 0 0 chr9 32131004 32131053 -110140391 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr9 32131506 32131532 -110139912 + AT_rich Low_complexity Low_complexity 1 26 0 259 270 95 47 chr9 32132400 32132548 -110138896 - L1MEc LINE L1 -6250 173 19 5035 167 34 19 chr9 32132846 32133321 -110138123 - L1MA8 LINE L1 0 6291 5824 330 26 0 0 chr9 32133321 32133360 -110138084 + (TG)n Simple_repeat Simple_repeat 2 40 0 5035 167 34 19 chr9 32133360 32134162 -110137282 - L1MA8 LINE L1 -467 5824 4992 3654 149 48 4 chr9 32134155 32134166 -110137278 + L1 LINE L1 4057 4066 -2080 * 6649 73 8 22 chr9 32134166 32135561 -110135883 - L1PA6 LINE L1 0 6154 4773 3654 149 48 4 chr9 32135561 32136241 -110135203 + L1PA6 LINE L1 4066 4778 -1368 1535 230 22 10 chr9 32136423 32136888 -110134556 - MER101B LTR ERV1 -57 417 3 321 360 40 25 chr9 32137188 32137463 -110133981 + MLT1H LTR MaLR 1 279 -270 189 74 0 0 chr9 32138777 32138804 -110132640 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1983 42 0 0 chr9 32139539 32139779 -110131665 + L1PA3 LINE L1 5913 6152 -3 42 36 0 0 chr9 32140241 32140297 -110131147 + AT_rich Low_complexity Low_complexity 1 56 0 32 75 0 0 chr9 32141194 32141261 -110130183 + AT_rich Low_complexity Low_complexity 1 67 0 212 364 58 8 chr9 32141934 32142055 -110129389 + MIR SINE MIR 13 139 -123 1721 167 16 16 chr9 32143145 32143456 -110127988 + AluJb SINE Alu 1 311 -1 303 265 60 43 chr9 32143762 32143879 -110127565 - L2 LINE L2 0 3272 3154 283 366 142 41 chr9 32144094 32145428 -110126016 - L2 LINE L2 -462 2852 1384 201 350 39 10 chr9 32145596 32145699 -110125745 + MIR SINE MIR 41 146 -62 462 218 10 0 chr9 32146836 32146937 -110124507 - U13 snRNA snRNA -2 102 1 1387 244 16 16 chr9 32147747 32148111 -110123333 + MLT1A1 LTR MaLR 2 365 0 22 35 0 0 chr9 32148980 32149009 -110122435 + AT_rich Low_complexity Low_complexity 1 29 0 1761 223 12 0 chr9 32149586 32149932 -110121512 - MLT1-int LTR MaLR -513 858 509 296 179 30 0 chr9 32149933 32150000 -110121444 + CT-rich Low_complexity Low_complexity 4 72 0 1841 235 38 30 chr9 32150000 32150265 -110121179 - MLT1-int LTR MaLR -838 533 272 2403 65 7 0 chr9 32150265 32150573 -110120871 - AluY SINE Alu -1 310 1 1841 235 38 30 chr9 32150573 32150835 -110120609 - MLT1-int LTR MaLR -1099 272 2 1620 201 41 46 chr9 32150837 32150986 -110120458 - MLT2C1 LTR ERVL -1 396 248 4178 130 42 3 chr9 32150986 32151672 -110119772 - L1PA15 LINE L1 -2 6163 5451 1620 201 41 46 chr9 32151672 32151910 -110119534 - MLT2C1 LTR ERVL -149 248 11 2401 264 22 39 chr9 32151920 32152738 -110118706 - LOR1-int LTR ERV1 -803 4133 3330 1953 154 0 0 chr9 32152936 32153234 -110118210 - AluSx SINE Alu -14 298 1 282 136 29 146 chr9 32153632 32153735 -110117709 - LOR1-int LTR ERV1 -1819 3117 3027 4695 53 2 2 chr9 32154117 32154734 -110116710 + L1P LINE L1 4777 5393 -753 7213 50 1 3 chr9 32154849 32156145 -110115299 + L1PA6 LINE L1 4860 6153 -1 1894 157 0 19 chr9 32156318 32156630 -110114814 - AluSx SINE Alu -6 306 1 264 212 53 82 chr9 32156678 32156848 -110114596 - LOR1-int LTR ERV1 -3782 4338 4174 2227 165 25 16 chr9 32157126 32157574 -110113870 + L1MB3 LINE L1 5730 6181 -2 47 0 0 0 chr9 32157584 32157631 -110113813 + AT_rich Low_complexity Low_complexity 1 47 0 1211 224 74 20 chr9 32157670 32158022 -110113422 - LTR25 LTR ERV1 -10 784 414 290 188 141 0 chr9 32157992 32158056 -110113388 - MER51A LTR ERV1 -354 280 208 * 518 131 12 0 chr9 32158227 32158311 -110113133 - MER61E LTR ERV1 -484 85 1 234 0 0 0 chr9 32159127 32159153 -110112291 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2446 130 57 4 chr9 32159153 32159558 -110111886 - L1PA10 LINE L1 -20 6148 5725 853 238 84 0 chr9 32159796 32160023 -110111421 - ORSL DNA AcHobo 0 275 30 332 267 113 35 chr9 32160141 32160546 -110110898 + MLT1J2 LTR MaLR 15 444 -2 396 0 0 0 chr9 32160768 32160812 -110110632 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 65 0 0 chr9 32161000 32161046 -110110398 + AT_rich Low_complexity Low_complexity 1 46 0 33 80 0 0 chr9 32163404 32163479 -110107965 + AT_rich Low_complexity Low_complexity 1 75 0 1209 172 62 41 chr9 32163689 32163979 -110107465 - L1MB5 LINE L1 -8 6166 5871 21 36 0 0 chr9 32164727 32164755 -110106689 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 32164860 32164905 -110106539 + AT_rich Low_complexity Low_complexity 1 45 0 270 311 90 54 chr9 32165949 32166116 -110105328 + MLT1J LTR MaLR 106 278 -233 250 270 40 0 chr9 32166490 32166564 -110104880 + MIR SINE MIR 78 154 -108 248 146 24 0 chr9 32166967 32167006 -110104438 - MLT1B LTR MaLR -2 388 349 1123 177 26 5 chr9 32167006 32167227 -110104217 + LTR18B LTR ERVL 1 259 -98 876 166 67 36 chr9 32167304 32167527 -110103917 + LTR18B LTR ERVL 385 614 0 1405 218 3 31 chr9 32167534 32167855 -110103589 + HERVL18 LTR ERVL 2 313 -5734 1404 218 7 0 chr9 32167829 32168100 -110103344 + HERVL18 LTR ERVL 492 764 -5283 * 512 158 0 11 chr9 32168109 32168204 -110103240 + HERVL18 LTR ERVL 874 967 -5080 * 1135 143 14 13 chr9 32168196 32168543 -110102901 + HERVL18 LTR ERVL 1399 1810 -4237 1117 113 118 2 chr9 32168542 32168775 -110102669 + HERVL18 LTR ERVL 2119 2436 -3611 * 2946 163 11 14 chr9 32168774 32169587 -110101857 + HERVL18 LTR ERVL 2725 3573 -2474 527 135 79 11 chr9 32169595 32169684 -110101760 + HERVL18 LTR ERVL 4394 4488 -1559 297 220 0 0 chr9 32169684 32169734 -110101710 + HERVL18 LTR ERVL 5209 5258 -789 1276 208 267 16 chr9 32169983 32170474 -110100970 + LTR18B LTR ERVL 1 614 0 1001 242 30 83 chr9 32170474 32170843 -110100601 - MLT1B LTR MaLR -36 354 6 2035 250 73 31 chr9 32170854 32171443 -110100001 + MLT1E1 LTR MaLR 41 654 0 1427 203 16 23 chr9 32172699 32173004 -110098440 - AluJb SINE Alu -7 305 3 1372 23 23 0 chr9 32174450 32174606 -110096838 + (TTTC)n Simple_repeat Simple_repeat 1 337 0 1372 23 23 0 chr9 32174606 32174780 -110096664 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1639 186 33 21 chr9 32176228 32176285 -110095159 - MER7A DNA MER2_type -2692 346 291 2206 129 14 32 chr9 32176285 32176656 -110094788 - THE1B LTR MaLR 0 364 1 1639 186 33 21 chr9 32176656 32176932 -110094512 - MER7A DNA MER2_type -2747 291 11 269 250 0 0 chr9 32176931 32176983 -110094461 - MER7A DNA MER2_type -295 53 2 * 23 0 0 0 chr9 32176997 32177020 -110094424 + AT_rich Low_complexity Low_complexity 1 23 0 4790 212 80 22 chr9 32177680 32179062 -110092382 - L1MEd LINE L1 -2390 5175 3875 207 0 0 0 chr9 32179062 32179085 -110092359 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4790 212 80 22 chr9 32179085 32179169 -110092275 - L1MEd LINE L1 -3690 3875 3797 180 0 0 0 chr9 32179169 32179189 -110092255 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4790 212 80 22 chr9 32179189 32179402 -110092042 - L1MEd LINE L1 -3768 3797 3598 233 56 0 28 chr9 32179402 32179438 -110092006 + (TA)n Simple_repeat Simple_repeat 1 35 0 4790 212 80 22 chr9 32179438 32179561 -110091883 - L1MEd LINE L1 -3967 3598 3484 11499 25 0 0 chr9 32179561 32181696 -110089748 + L1PA3 LINE L1 4021 6153 -2 4790 212 80 22 chr9 32181696 32181719 -110089725 - L1MEd LINE L1 -4081 3484 3464 330 115 0 0 chr9 32181719 32181771 -110089673 + (TA)n Simple_repeat Simple_repeat 2 53 0 4790 212 80 22 chr9 32181771 32181938 -110089506 - L1MEd LINE L1 -4101 3464 3046 240 256 120 26 chr9 32182050 32182167 -110089277 + LTR16C LTR ERVL 279 406 -85 309 267 44 100 chr9 32182565 32182745 -110088699 - L1MEd LINE L1 -5031 2524 2355 1434 199 32 71 chr9 32182977 32183440 -110088004 - LTR56 LTR ERV1 0 445 1 23 0 0 0 chr9 32184062 32184085 -110087359 + AT_rich Low_complexity Low_complexity 1 23 0 651 252 93 11 chr9 32185052 32185330 -110086114 - L1ME2 LINE L1 -10 6154 5854 282 343 33 50 chr9 32185444 32185625 -110085819 + L3 LINE CR1 1252 1429 -148 554 198 59 48 chr9 32185971 32186006 -110085438 + MER53 DNA DNA 1 34 -155 1457 181 29 25 chr9 32186006 32186287 -110085157 + AluJo SINE Alu 1 282 -30 603 40 0 0 chr9 32186288 32186362 -110085082 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 554 198 59 48 chr9 32186362 32186511 -110084933 + MER53 DNA DNA 33 189 0 456 324 23 95 chr9 32187474 32187823 -110083621 - L2 LINE L2 -15 3298 2975 2494 37 0 0 chr9 32187913 32188213 -110083231 + L1PA5 LINE L1 5848 6147 -7 1162 268 65 3 chr9 32188261 32188597 -110082847 - MER110 LTR ERV1 -116 375 19 369 0 0 0 chr9 32188607 32188648 -110082796 + (TTA)n Simple_repeat Simple_repeat 2 42 0 641 353 32 0 chr9 32188657 32188909 -110082535 - L2 LINE L2 -340 2974 2715 233 236 18 0 chr9 32190176 32190231 -110081213 + (TATG)n Simple_repeat Simple_repeat 1 56 0 370 274 68 76 chr9 32190246 32190787 -110080657 - L1M4 LINE L1 -2172 3974 3438 22 0 0 0 chr9 32190903 32190925 -110080519 + AT_rich Low_complexity Low_complexity 1 22 0 2894 71 13 2 chr9 32190992 32191388 -110080056 - L1PA7 LINE L1 0 6154 5755 2124 117 6 26 chr9 32191388 32191731 -110079713 + L1P LINE L1 2106 2441 -3705 623 124 62 149 chr9 32191809 32192003 -110079441 + MER53 DNA DNA 2 178 -11 420 289 176 26 chr9 32192040 32192427 -110079017 - L1M4 LINE L1 -2961 3185 2741 928 94 0 0 chr9 32192467 32192584 -110078860 - AluY SINE Alu -184 127 11 369 312 73 30 chr9 32192602 32192932 -110078512 - L1M4 LINE L1 -3537 2609 2266 438 236 46 41 chr9 32193144 32193339 -110078105 - L1MC4 LINE L1 -146 7896 7701 1086 242 181 50 chr9 32193361 32194047 -110077397 + L1MC4a LINE L1 5895 6648 -1137 207 297 0 14 chr9 32194058 32194132 -110077312 + (TA)n Simple_repeat Simple_repeat 2 74 0 521 287 38 38 chr9 32194843 32195052 -110076392 - MER63A DNA MER1_type 0 210 2 1751 315 71 48 chr9 32195514 32197492 -110073952 + L1MEc LINE L1 165 2187 -4209 321 289 72 36 chr9 32197474 32197837 -110073607 + L1MEc LINE L1 2659 3034 -3181 * 2101 125 0 0 chr9 32197839 32198136 -110073308 + AluSx SINE Alu 1 297 -15 597 290 41 19 chr9 32198162 32198576 -110072868 + L1MEc LINE L1 3155 3577 -2638 209 366 71 21 chr9 32198691 32198767 -110072677 + L2 LINE L2 2049 2120 -1194 2436 55 3 6 chr9 32198767 32199079 -110072365 - AluY SINE Alu 0 311 1 209 366 71 21 chr9 32199079 32199327 -110072117 + L2 LINE L2 2120 2389 -925 358 233 26 43 chr9 32199899 32200015 -110071429 - L1M4 LINE L1 -2095 4051 3938 2254 127 94 10 chr9 32200052 32200445 -110070999 + MSTA LTR MaLR 3 428 0 396 0 0 0 chr9 32200445 32200489 -110070955 + (TG)n Simple_repeat Simple_repeat 2 45 0 277 305 0 0 chr9 32200489 32200571 -110070873 - L1M4 LINE L1 -2472 3674 3593 183 338 235 15 chr9 32200660 32201128 -110070316 - L2 LINE L2 -925 2389 1819 2198 92 3 26 chr9 32201338 32201644 -110069800 + AluSc SINE Alu 3 301 -8 229 265 96 0 chr9 32201822 32201905 -110069539 - MLT1I LTR MaLR -8 401 311 339 341 103 9 chr9 32201961 32202175 -110069269 - MLT1J2 LTR MaLR -201 249 16 802 315 108 40 chr9 32202289 32203013 -110068431 + L2 LINE L2 2532 3311 -2 31 0 0 0 chr9 32203038 32203069 -110068375 + AT_rich Low_complexity Low_complexity 1 31 0 1775 193 33 28 chr9 32203296 32203690 -110067754 - MSTD LTR MaLR 0 396 1 453 222 9 9 chr9 32203722 32203830 -110067614 - L1ME LINE L1 -478 5643 5536 358 270 62 61 chr9 32204220 32204466 -110066978 + MIR SINE MIR 15 256 -6 847 138 19 19 chr9 32206443 32206603 -110064841 - L1MA9 LINE L1 0 6312 6153 1706 158 142 16 chr9 32207331 32207711 -110063733 - MSTA LTR MaLR 0 428 1 242 312 21 59 chr9 32208839 32209025 -110062419 - HAL1b LINE L1 -697 651 473 210 269 0 64 chr9 32209407 32209548 -110061896 + T-rich Low_complexity Low_complexity 3 134 0 397 209 0 0 chr9 32212883 32212974 -110058470 - L1MB8 LINE L1 0 6178 6088 383 238 125 42 chr9 32213008 32213176 -110058268 + MLT1D LTR MaLR 324 505 0 229 324 112 42 chr9 32213319 32213578 -110057866 - L2 LINE L2 -488 2826 2550 2279 75 0 50 chr9 32214504 32214825 -110056619 - AluY SINE Alu -6 305 1 1863 168 50 19 chr9 32214885 32215249 -110056195 - THE1C LTR MaLR 0 375 1 242 0 0 0 chr9 32216854 32216883 -110054561 + MADE1 DNA Mariner 51 79 -1 547 260 58 6 chr9 32216883 32217056 -110054388 - L2 LINE L2 -32 3281 3100 231 179 0 0 chr9 32217113 32217152 -110054292 + MLT1E3 LTR MaLR 46 84 -540 427 273 159 0 chr9 32217211 32217387 -110054057 + HsTC2 DNA Tc2 341 544 -1354 22 0 0 0 chr9 32217964 32217986 -110053458 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 32220771 32220800 -110050644 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 32220896 32220920 -110050524 + AT_rich Low_complexity Low_complexity 1 24 0 25 75 0 0 chr9 32222306 32222359 -110049085 + AT_rich Low_complexity Low_complexity 1 53 0 1060 259 39 86 chr9 32222852 32222976 -110048468 + MLT1B LTR MaLR 4 132 -258 1653 186 148 13 chr9 32222976 32223353 -110048091 + MSTA LTR MaLR 1 428 0 1060 259 39 86 chr9 32223353 32223634 -110047810 + MLT1B LTR MaLR 132 390 0 227 237 0 34 chr9 32223913 32223972 -110047472 + (CATA)n Simple_repeat Simple_repeat 2 58 0 299 333 44 7 chr9 32224923 32225058 -110046386 - MIR SINE MIR 0 262 123 303 358 42 0 chr9 32225488 32225608 -110045836 + L2 LINE L2 2697 2821 -493 1813 228 72 23 chr9 32225761 32226234 -110045210 - MLT1D LTR MaLR 0 505 10 267 280 40 0 chr9 32226444 32226519 -110044925 + L2 LINE L2 3236 3313 0 3962 229 33 26 chr9 32226776 32228615 -110042829 + L1MB8 LINE L1 4334 6177 -1 823 304 27 69 chr9 32229151 32229601 -110041843 - LTR16A LTR ERVL -5 445 15 342 295 81 7 chr9 32229735 32229929 -110041515 - L1M4c LINE L1 -4836 1548 1345 246 105 0 0 chr9 32230506 32230544 -110040900 + (T)n Simple_repeat Simple_repeat 1 38 0 255 309 59 29 chr9 32231258 32231394 -110040050 + LTR67 LTR ERVL 334 473 -84 261 260 0 0 chr9 32231779 32231883 -110039561 + (TA)n Simple_repeat Simple_repeat 1 104 0 225 0 0 0 chr9 32231980 32232005 -110039439 + (A)n Simple_repeat Simple_repeat 1 25 0 12554 186 28 7 chr9 32232222 32235947 -110035497 - L1MA3 LINE L1 0 7724 3931 234 288 55 0 chr9 32236015 32236088 -110035356 + L2 LINE L2 3237 3313 0 6548 206 180 57 chr9 32236291 32238162 -110033282 - L1MA3 LINE L1 -5443 2122 22 183 268 81 106 chr9 32239204 32239327 -110032117 + L2 LINE L2 3175 3294 -19 185 273 0 0 chr9 32239598 32239642 -110031802 - MIR3 SINE MIR -48 160 117 32 57 0 0 chr9 32239944 32239997 -110031447 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr9 32240053 32240079 -110031365 + AT_rich Low_complexity Low_complexity 1 26 0 1605 330 105 20 chr9 32240183 32241517 -110029927 - L2 LINE L2 -1 3312 1870 25 51 0 0 chr9 32241574 32241613 -110029831 + AT_rich Low_complexity Low_complexity 1 39 0 273 271 71 57 chr9 32243004 32243144 -110028300 + MLT1L LTR MaLR 5 146 -469 21 0 0 0 chr9 32243332 32243353 -110028091 + AT_rich Low_complexity Low_complexity 1 21 0 293 206 88 0 chr9 32243818 32243886 -110027558 - MER103 DNA DNA -42 124 51 1372 288 49 10 chr9 32243965 32244375 -110027069 - MLT1F1 LTR MaLR -139 428 3 2400 76 0 0 chr9 32245071 32245372 -110026072 - AluY SINE Alu -10 301 1 219 69 0 0 chr9 32246279 32246308 -110025136 + (TA)n Simple_repeat Simple_repeat 2 30 0 444 267 30 23 chr9 32246308 32246439 -110025005 - MLT1F1 LTR MaLR -322 245 114 294 250 10 21 chr9 32246448 32246544 -110024900 + (TA)n Simple_repeat Simple_repeat 2 96 0 8356 64 22 0 chr9 32247065 32248187 -110023257 - L1P LINE L1 -1188 4958 3812 612 330 104 40 chr9 32248240 32248861 -110022583 + L2 LINE L2 2658 3311 -2 1011 205 147 23 chr9 32249702 32250009 -110021435 + MER2 DNA MER2_type 1 345 0 22 0 0 0 chr9 32250475 32250497 -110020947 + AT_rich Low_complexity Low_complexity 1 22 0 491 126 11 42 chr9 32251158 32251253 -110020191 - L1PA16 LINE L1 -2 6164 6073 741 282 67 82 chr9 32251255 32252248 -110019196 - LTR28 LTR ERV1 0 1755 1 29934 130 21 3 chr9 32252250 32256661 -110014783 - LTR28-int LTR ERV1 -2 7089 2603 239 307 60 67 chr9 32256899 32257049 -110014395 - MIR SINE MIR -94 168 20 2758 13 0 0 chr9 32259817 32260127 -110011317 - L1P1 LINE L1 -349 5806 5497 964 34 0 0 chr9 32260127 32260243 -110011201 + L1PA2 LINE L1 6037 6153 -2 33 25 0 0 chr9 32260270 32260310 -110011134 + AT_rich Low_complexity Low_complexity 1 40 0 1117 259 109 59 chr9 32260637 32260980 -110010464 + L1MEc LINE L1 241 565 -6042 285 75 0 0 chr9 32260980 32261020 -110010424 + (TG)n Simple_repeat Simple_repeat 1 40 0 186 43 0 0 chr9 32261019 32261042 -110010402 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1117 259 109 59 chr9 32261020 32261205 -110010239 + L1MEc LINE L1 565 784 -5823 405 0 0 0 chr9 32261205 32261250 -110010194 + (CA)n Simple_repeat Simple_repeat 2 46 0 1117 259 109 59 chr9 32261250 32261337 -110010107 + L1MEc LINE L1 784 865 -5742 577 263 227 39 chr9 32261341 32261698 -110009746 + MLT2F LTR ERVL 34 457 -206 306 0 0 0 chr9 32261801 32261835 -110009609 + (TG)n Simple_repeat Simple_repeat 2 35 0 526 223 6 13 chr9 32261895 32262052 -110009392 + L1MEc LINE L1 898 1053 -5554 867 246 137 49 chr9 32262090 32262500 -110008944 + L1MD2 LINE L1 5912 6357 -2 290 216 33 93 chr9 32262684 32262882 -110008562 + L1MEc LINE L1 1809 2095 -4455 2780 76 3 3 chr9 32264509 32264864 -110006580 - THE1A LTR MaLR 0 355 1 10864 114 14 0 chr9 32264864 32266423 -110005021 - THE1A-int LTR MaLR 0 1580 1 2562 107 3 0 chr9 32266423 32266777 -110004667 - THE1A LTR MaLR 0 355 1 22 0 0 0 chr9 32267632 32267654 -110003790 + AT_rich Low_complexity Low_complexity 1 22 0 2013 199 62 41 chr9 32267781 32268268 -110003176 + MER67D LTR ERV1 14 510 -4 22 0 0 0 chr9 32269396 32269418 -110002026 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr9 32270061 32270087 -110001357 + AT_rich Low_complexity Low_complexity 1 26 0 2076 202 2 2 chr9 32270461 32270857 -110000587 - L1PA15 LINE L1 -3 6162 5767 185 300 18 100 chr9 32270901 32271011 -110000433 - L2 LINE L2 -317 2955 2855 189 107 0 0 chr9 32271019 32271047 -110000397 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 551 231 148 35 chr9 32271258 32271461 -109999983 + ERVL LTR ERVL 2 227 -5537 * 4473 108 13 149 chr9 32271459 32273043 -109998401 + pTR5 LTR ERV1 741 2606 0 727 254 47 42 chr9 32273095 32273331 -109998113 + ERVL LTR ERVL 299 535 -5229 256 81 27 0 chr9 32273331 32273368 -109998076 + L1PA12 LINE L1 4525 4562 -1584 817 93 0 0 chr9 32273369 32273476 -109997968 + AluY SINE Alu 187 293 -18 5383 118 47 5 chr9 32273478 32273667 -109997777 + L1PA12 LINE L1 4549 4729 -1439 2721 171 68 20 chr9 32273667 32274228 -109997216 - LTR4 LTR ERV1 0 588 1 5383 118 47 5 chr9 32274228 32275617 -109995827 + L1PA12 LINE L1 4729 6164 -4 18546 210 46 16 chr9 32275635 32279419 -109992025 + ERVL LTR ERVL 530 4202 -1562 2000 128 24 0 chr9 32279419 32279709 -109991735 - AluSq SINE Alu -14 299 3 1618 119 116 11 chr9 32279711 32279979 -109991465 - AluSx SINE Alu -16 296 1 18546 210 46 16 chr9 32279979 32280085 -109991359 + ERVL LTR ERVL 4202 4537 -1227 1001 306 70 44 chr9 32280531 32280982 -109990462 + MLT1E LTR MaLR 4 475 -118 1799 130 68 40 chr9 32280982 32281336 -109990108 + THE1B LTR MaLR 1 364 0 1001 306 70 44 chr9 32281336 32281456 -109989988 + MLT1E LTR MaLR 475 590 -3 1194 251 53 29 chr9 32281589 32281963 -109989481 + L1ME1 LINE L1 5779 6161 -5 305 304 9 43 chr9 32282184 32282299 -109989145 - MLT1J2 LTR MaLR -339 111 1 270 132 0 0 chr9 32282535 32282588 -109988856 + (TA)n Simple_repeat Simple_repeat 2 54 0 378 0 0 0 chr9 32283022 32283064 -109988380 + (TG)n Simple_repeat Simple_repeat 2 43 0 1707 214 52 31 chr9 32283410 32283826 -109987618 - MSTA LTR MaLR 0 408 1 7859 197 40 12 chr9 32283826 32285432 -109986012 - MSTA-int LTR MaLR 0 1651 1 2069 179 65 2 chr9 32285432 32285835 -109985609 - MSTA LTR MaLR 0 428 1 2460 253 90 41 chr9 32286795 32289323 -109982121 - L1MCb LINE L1 -3082 3482 704 8863 170 28 33 chr9 32289340 32290546 -109980898 + Tigger3(Golem) DNA MER2_type 14 1225 -1804 1340 238 21 7 chr9 32290546 32290828 -109980616 + AluJo SINE Alu 1 286 -26 8863 170 28 33 chr9 32290828 32290849 -109980595 + Tigger3(Golem) DNA MER2_type 1225 1245 -1784 1576 208 16 13 chr9 32290849 32291157 -109980287 - AluJb SINE Alu -1 311 3 8863 170 28 33 chr9 32291157 32291168 -109980276 + Tigger3(Golem) DNA MER2_type 1245 1255 -1774 282 73 0 0 chr9 32291168 32291209 -109980235 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8863 170 28 33 chr9 32291209 32291682 -109979762 + Tigger3(Golem) DNA MER2_type 1255 1718 -1311 325 192 0 0 chr9 32291685 32291737 -109979707 + Tigger3(Golem) DNA MER2_type 2976 3027 -2 567 253 24 91 chr9 32291779 32292075 -109979369 - L1MCb LINE L1 -5436 609 334 1107 234 117 45 chr9 32292107 32292509 -109978935 + MSTB2 LTR MaLR 23 453 -4 809 274 75 60 chr9 32292515 32292847 -109978597 - L1MCb LINE L1 -5765 280 5 595 361 95 27 chr9 32292849 32293425 -109978019 - L2 LINE L2 -201 3071 2464 26 82 0 0 chr9 32294232 32294293 -109977151 + AT_rich Low_complexity Low_complexity 1 61 0 561 308 69 12 chr9 32294298 32294545 -109976899 - MIR SINE MIR 0 262 2 225 219 254 18 chr9 32295038 32295152 -109976292 - MER5A DNA MER1_type -2 187 47 21 0 0 0 chr9 32296741 32296762 -109974682 + AT_rich Low_complexity Low_complexity 1 21 0 204 277 0 0 chr9 32297445 32297528 -109973916 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 26 0 0 0 chr9 32297585 32297611 -109973833 + AT_rich Low_complexity Low_complexity 1 26 0 284 303 76 95 chr9 32299177 32299441 -109972003 - MIR SINE MIR -3 259 1 248 261 11 0 chr9 32299583 32299675 -109971769 + (TATATG)n Simple_repeat Simple_repeat 3 95 0 2578 196 15 67 chr9 32299721 32300379 -109971065 - L1MB5 LINE L1 -7 6403 5780 1821 253 50 14 chr9 32300385 32301040 -109970404 - L1MB5 LINE L1 -743 5639 4980 343 322 40 66 chr9 32303326 32303599 -109967845 + L1MDa LINE L1 19 284 -6256 742 170 7 7 chr9 32303628 32303781 -109967663 + GA-rich Low_complexity Low_complexity 2 154 0 346 267 0 59 chr9 32303913 32304048 -109967396 - L1ME2 LINE L1 -73 6091 5965 280 322 107 27 chr9 32304042 32304408 -109967036 - L1MB5 LINE L1 -4885 1499 1105 * 690 306 90 29 chr9 32304395 32305033 -109966411 - L1ME LINE L1 -5113 957 283 1981 181 67 20 chr9 32305143 32305547 -109965897 + MSTC LTR MaLR 1 423 -5 350 302 55 25 chr9 32305644 32305879 -109965565 - L1MEc LINE L1 -4762 2360 2119 1828 187 20 33 chr9 32305952 32306342 -109965102 + MLT1B LTR MaLR 4 388 -2 3054 218 66 25 chr9 32306504 32307744 -109963700 - L1MB8 LINE L1 -12 6166 4869 263 316 70 29 chr9 32307858 32308130 -109963314 - L1MEc LINE L1 -4928 1495 1213 228 337 58 0 chr9 32308725 32308811 -109962633 - L1MEc LINE L1 -5985 438 348 3081 175 61 17 chr9 32308902 32309555 -109961889 - L1MA10 LINE L1 -1 6333 5652 2556 128 12 0 chr9 32309574 32309989 -109961455 - L1MA1 LINE L1 0 6302 5883 5019 87 9 1 chr9 32310566 32311260 -109960184 - L1PA7 LINE L1 -1937 4209 3511 8151 78 7 23 chr9 32311261 32313210 -109958234 + L1PA7 LINE L1 4220 6152 -2 253 228 0 0 chr9 32313232 32313289 -109958155 - L1MA10 LINE L1 -986 5373 5317 1340 97 0 0 chr9 32313568 32313754 -109957690 - L1PA7 LINE L1 -7 6147 5962 5173 66 18 0 chr9 32313754 32314502 -109956942 + L1PA7 LINE L1 5185 5944 -210 3633 229 22 15 chr9 32314499 32315805 -109955639 - L1MA1 LINE L1 -501 5667 4360 * 745 167 8 0 chr9 32315818 32315938 -109955506 - FLAM_A SINE Alu -21 121 1 1641 207 11 11 chr9 32315939 32316296 -109955148 + MER65A LTR ERV1 62 418 -27 892 51 103 0 chr9 32316294 32316411 -109955033 - MER9 LTR ERVK -382 129 1 * 2819 251 60 43 chr9 32316413 32317580 -109953864 + MER65A-int LTR ERV1 61 1247 -3624 974 210 65 96 chr9 32317608 32317740 -109953704 + MER65A-int LTR ERV1 1516 1651 -5107 2825 7 0 0 chr9 32317740 32318050 -109953394 + AluY SINE Alu 2 311 0 974 210 65 96 chr9 32318050 32318699 -109952745 + MER65A-int LTR ERV1 1651 2436 -4322 2266 102 7 3 chr9 32318768 32319073 -109952371 - AluSc SINE Alu -1 308 3 615 171 0 55 chr9 32319287 32319433 -109952011 + MER57-int LTR ERV1 705 842 -6695 254 235 39 69 chr9 32319518 32319620 -109951824 + MER57-int LTR ERV1 841 939 -4184 32 26 0 0 chr9 32319765 32319804 -109951640 + AT_rich Low_complexity Low_complexity 1 39 0 1876 121 7 4 chr9 32319806 32320079 -109951365 + AluSx SINE Alu 1 274 -38 1870 204 16 18 chr9 32320081 32320517 -109950927 + L1PB3 LINE L1 3371 3805 -2341 1165 163 37 0 chr9 32320523 32320849 -109950595 + L1PB3 LINE L1 5100 5439 -715 6216 194 108 37 chr9 32320850 32322362 -109949082 - MER52A LTR ERV1 0 1755 61 3177 137 13 109 chr9 32322397 32322681 -109948763 + L1PB3 LINE L1 5527 5708 -446 347 89 18 0 chr9 32322681 32322737 -109948707 + (TG)n Simple_repeat Simple_repeat 2 58 0 3177 137 13 109 chr9 32322737 32323137 -109948307 + L1PB3 LINE L1 5708 6145 -9 927 187 7 93 chr9 32323269 32323420 -109948024 - L1MA1 LINE L1 -1792 4354 4235 2078 120 0 0 chr9 32323420 32323738 -109947706 + AluSx SINE Alu 1 318 0 927 187 7 93 chr9 32323738 32323863 -109947581 - L1MA1 LINE L1 -1911 4235 4101 293 111 0 22 chr9 32323861 32323906 -109947538 - L1P5 LINE L1 -433 5723 5680 * 264 30 0 0 chr9 32324077 32324110 -109947334 + (CA)n Simple_repeat Simple_repeat 2 34 0 270 56 0 0 chr9 32324343 32324379 -109947065 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2013 141 0 0 chr9 32324441 32324732 -109946712 - AluSx SINE Alu -11 301 11 1049 236 5 0 chr9 32324984 32325187 -109946257 + MER45B DNA AcHobo 4 207 -833 332 211 0 53 chr9 32325191 32325267 -109946177 + MER45B DNA AcHobo 542 613 -427 1535 284 20 36 chr9 32326061 32326610 -109944834 + MLT1F LTR MaLR 3 542 0 21 36 0 0 chr9 32326611 32326639 -109944805 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 32326742 32326787 -109944657 + AT_rich Low_complexity Low_complexity 1 45 0 728 278 63 4 chr9 32327155 32327410 -109944034 + L1MCc LINE L1 206 475 -5948 * 991 271 29 20 chr9 32327409 32327752 -109943692 + L1ME1 LINE L1 5806 6151 -15 261 252 17 26 chr9 32327775 32327890 -109943554 + (TA)n Simple_repeat Simple_repeat 1 114 0 21 0 0 0 chr9 32328037 32328058 -109943386 + AT_rich Low_complexity Low_complexity 1 21 0 437 216 72 12 chr9 32328168 32328335 -109943109 + LTR50 LTR ERVL 3 177 -596 24 0 0 0 chr9 32328791 32328815 -109942629 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 32329064 32329099 -109942345 + AT_rich Low_complexity Low_complexity 1 35 0 585 296 138 33 chr9 32330103 32331037 -109940407 - L1MEc LINE L1 -3935 2461 1430 1015 185 0 15 chr9 32331676 32331876 -109939568 - L1PB1 LINE L1 0 6151 5955 385 291 104 32 chr9 32332709 32332929 -109938515 - MLT1I LTR MaLR -76 333 98 570 280 103 10 chr9 32333278 32333587 -109937857 - MLT1D LTR MaLR 0 505 276 185 350 62 56 chr9 32333633 32333793 -109937651 - MIR SINE MIR -13 249 89 334 259 54 27 chr9 32335176 32335323 -109936121 + L1M4 LINE L1 4557 4707 -1439 313 291 106 17 chr9 32335409 32335646 -109935798 + L1M4 LINE L1 4943 5200 -946 24 0 0 0 chr9 32335965 32335989 -109935455 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 32337401 32337422 -109934022 + AT_rich Low_complexity Low_complexity 1 21 0 3020 154 24 46 chr9 32337923 32338364 -109933080 - L1P4 LINE L1 -371 5795 5378 1545 212 3 7 chr9 32338364 32338657 -109932787 - AluSx SINE Alu -17 295 4 3020 154 24 46 chr9 32338657 32339117 -109932327 - L1P4 LINE L1 -788 5378 4910 275 213 0 0 chr9 32339118 32339179 -109932265 + L1P LINE L1 4501 4561 -1585 1155 202 0 4 chr9 32339181 32339424 -109932020 + L1 LINE L1 4655 4896 -1250 661 302 83 0 chr9 32339608 32339896 -109931548 - L1M4 LINE L1 -1312 4834 4523 443 297 45 22 chr9 32339899 32340121 -109931323 - L1M4 LINE L1 -1984 4162 3936 195 184 0 0 chr9 32340121 32340159 -109931285 + (TG)n Simple_repeat Simple_repeat 2 39 0 341 237 35 35 chr9 32340159 32340273 -109931171 + L1MC4 LINE L1 6588 6701 -1341 5057 185 33 43 chr9 32340273 32340605 -109930839 - L1MA9 LINE L1 -167 6214 5880 216 0 0 0 chr9 32340605 32340629 -109930815 + (TG)n Simple_repeat Simple_repeat 2 25 0 5057 185 33 43 chr9 32340629 32342375 -109929069 - L1MA9 LINE L1 -501 5880 4162 1531 246 45 57 chr9 32342390 32342767 -109928677 - L1MA9 LINE L1 -3419 2796 2463 300 27 0 0 chr9 32342767 32342804 -109928640 + (CA)n Simple_repeat Simple_repeat 2 38 0 1531 246 45 57 chr9 32342804 32343138 -109928306 - L1MA9 LINE L1 -3752 2463 2126 1477 205 17 7 chr9 32343159 32343457 -109927987 - AluJb SINE Alu -8 304 4 1107 261 19 14 chr9 32343501 32343884 -109927560 + L1M4 LINE L1 1121 1759 -4554 297 54 54 0 chr9 32343951 32344007 -109927437 + (TA)n Simple_repeat Simple_repeat 1 59 0 36 40 0 0 chr9 32344052 32344102 -109927342 + AT_rich Low_complexity Low_complexity 1 50 0 1180 298 74 29 chr9 32344286 32344866 -109926578 + L1M4 LINE L1 3573 4178 -2204 1875 133 38 0 chr9 32344887 32345180 -109926264 + AluSx SINE Alu 1 304 -8 462 275 42 47 chr9 32345180 32345373 -109926071 + L1MC1 LINE L1 18 209 -6331 1706 218 64 8 chr9 32346123 32346595 -109924849 + L1M4 LINE L1 3520 4017 -2129 407 217 127 18 chr9 32346609 32346775 -109924669 + L1M4 LINE L1 4195 4378 -1768 4834 231 47 37 chr9 32346856 32349352 -109922092 + L1MC1 LINE L1 3961 6485 -242 2704 249 26 15 chr9 32349452 32350262 -109921182 - L1PA15-16 LINE L1 -4160 2637 1819 775 165 88 18 chr9 32350262 32350432 -109921012 - L1PA13 LINE L1 0 6163 5982 2087 260 17 11 chr9 32350445 32350968 -109920476 - L1PA15-16 LINE L1 -4981 1806 1281 2009 243 84 20 chr9 32350986 32351775 -109919669 + L1M4 LINE L1 2430 3268 -2878 1065 70 14 7 chr9 32352130 32352272 -109919172 + AluSc SINE Alu 157 299 -10 241 371 0 21 chr9 32352291 32352388 -109919056 - MIR SINE MIR -130 132 38 417 176 0 0 chr9 32353675 32353749 -109917695 + MLT1A2 LTR MaLR 6 79 -295 392 161 0 0 chr9 32353746 32353808 -109917636 - MER93b LTR ERV1 -300 73 12 * 306 50 0 0 chr9 32354957 32354997 -109916447 + (TA)n Simple_repeat Simple_repeat 1 40 0 6580 69 6 33 chr9 32355044 32356173 -109915271 + L1PA8 LINE L1 5068 6171 -1 9648 215 59 72 chr9 32357327 32360534 -109910910 - L1M1 LINE L1 -4390 3175 11 220 200 36 0 chr9 32360666 32360721 -109910723 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 32 0 0 0 chr9 32360750 32360782 -109910662 + AT_rich Low_complexity Low_complexity 1 32 0 703 130 0 0 chr9 32360837 32360937 -109910507 + AluS SINE Alu 1 100 -213 2010 79 68 0 chr9 32361134 32361413 -109910031 - AluY SINE Alu -13 298 1 717 192 3 3 chr9 32362939 32363259 -109908185 + (TA)n Simple_repeat Simple_repeat 1 320 0 1482 211 21 27 chr9 32363262 32363594 -109907850 - MLT2C1 LTR ERVL -63 334 5 2186 78 25 0 chr9 32364472 32364753 -109906691 + AluY SINE Alu 1 288 -23 21 89 0 0 chr9 32365296 32365352 -109906092 + AT_rich Low_complexity Low_complexity 1 56 0 1041 67 0 0 chr9 32365383 32365517 -109905927 - L1PA7 LINE L1 -2 6152 6019 187 258 19 0 chr9 32365830 32365892 -109905552 - MIR SINE MIR -98 110 46 24 0 0 0 chr9 32366194 32366218 -109905226 + AT_rich Low_complexity Low_complexity 1 24 0 922 241 118 29 chr9 32366458 32366773 -109904671 + MER2 DNA MER2_type 2 344 0 32 0 0 0 chr9 32367273 32367305 -109904139 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr9 32367543 32367566 -109903878 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr9 32368214 32368252 -109903192 + AT_rich Low_complexity Low_complexity 1 38 0 275 222 48 24 chr9 32368388 32368555 -109902889 + (TA)n Simple_repeat Simple_repeat 1 171 0 183 347 61 95 chr9 32368582 32368844 -109902600 - L2 LINE L2 -123 3149 2897 238 200 0 40 chr9 32369198 32369248 -109902196 + L1M3c LINE L1 120 167 -6092 4246 243 66 27 chr9 32369831 32372590 -109898854 + L1M3c LINE L1 539 3516 -2812 4077 127 6 138 chr9 32372607 32373522 -109897922 - LTR25 LTR ERV1 0 794 1 5801 195 37 17 chr9 32373523 32374835 -109896609 + L1M3c LINE L1 3515 4853 -1475 362 222 65 9 chr9 32374808 32374916 -109896528 + L1MA4 LINE L1 4461 4574 -1754 * 2940 168 58 5 chr9 32374920 32375526 -109895918 + L1MA4 LINE L1 5840 6477 -5 231 170 0 0 chr9 32375591 32375638 -109895806 + (CA)n Simple_repeat Simple_repeat 2 48 0 2485 185 17 35 chr9 32375721 32376180 -109895264 - L1MA8 LINE L1 -172 6119 5670 1922 98 14 44 chr9 32376180 32376477 -109894967 - AluSx SINE Alu -24 288 1 2485 185 17 35 chr9 32376477 32376557 -109894887 - L1MA8 LINE L1 -621 5670 5590 571 214 58 0 chr9 32376554 32376708 -109894736 + L1MA8 LINE L1 6127 6289 -2 * 421 197 0 0 chr9 32376714 32376814 -109894630 + L1ME LINE L1 5715 5814 -348 274 281 140 22 chr9 32376917 32377501 -109893943 + L1M4 LINE L1 2816 3468 -2678 753 203 61 6 chr9 32377541 32377704 -109893740 + AluJo SINE Alu 11 182 -130 234 152 0 0 chr9 32377704 32377752 -109893692 + Alu SINE Alu 86 123 -10 467 252 236 8 chr9 32377783 32378025 -109893419 + L1M4 LINE L1 3553 3849 -2297 36 23 0 0 chr9 32378903 32378946 -109892498 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr9 32379179 32379215 -109892229 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr9 32379332 32379361 -109892083 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 32380108 32380136 -109891308 + AT_rich Low_complexity Low_complexity 1 28 0 2027 196 62 35 chr9 32380998 32381462 -109889982 + MER101B LTR ERV1 94 570 0 448 168 20 10 chr9 32381484 32381585 -109889859 + GA-rich Low_complexity Low_complexity 3 104 0 2500 153 108 0 chr9 32382571 32383008 -109888436 + MER1A DNA MER1_type 2 485 -44 2249 84 0 13 chr9 32383009 32383320 -109888124 - AluY SINE Alu -4 307 1 29 70 0 0 chr9 32384155 32384212 -109887232 + AT_rich Low_complexity Low_complexity 1 57 0 186 43 0 0 chr9 32384760 32384783 -109886661 + (CCCTAA)n Simple_repeat Simple_repeat 1 23 0 2111 128 0 3 chr9 32384948 32385254 -109886190 + AluSx SINE Alu 1 305 -7 271 310 20 65 chr9 32385415 32385615 -109885829 + HAL1 LINE L1 91 281 -2226 263 289 21 35 chr9 32385616 32385758 -109885686 + HAL1 LINE L1 1238 1377 -1130 2107 107 3 7 chr9 32385883 32386172 -109885272 - AluSg SINE Alu -18 292 5 709 292 4 23 chr9 32386188 32386445 -109884999 + HAL1 LINE L1 1505 1756 -751 * 1258 181 21 60 chr9 32386439 32386770 -109884674 - L1M3 LINE L1 -494 5674 5357 2196 131 0 0 chr9 32386787 32387122 -109884322 - L1PA13 LINE L1 -6 6157 5823 4130 197 13 12 chr9 32387124 32388044 -109883400 + L1P LINE L1 3050 3970 -2176 39 50 0 0 chr9 32388440 32388500 -109882944 + AT_rich Low_complexity Low_complexity 1 60 0 11172 149 27 25 chr9 32388536 32390536 -109880908 - Tigger1 DNA MER2_type 0 2418 414 321 169 0 0 chr9 32390536 32390595 -109880849 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 229 379 57 24 chr9 32391402 32391613 -109879831 - MIR SINE MIR -4 258 41 270 296 0 0 chr9 32392043 32392114 -109879330 + L1M4b LINE L1 735 805 -6054 504 264 101 76 chr9 32392541 32392881 -109878563 + L1M4b LINE L1 1188 1549 -5306 2152 114 3 0 chr9 32392881 32393180 -109878264 + AluSg SINE Alu 1 300 -10 504 264 101 76 chr9 32393180 32393403 -109878041 + L1M4b LINE L1 1549 1765 -5090 4856 169 19 13 chr9 32393408 32395018 -109876426 + L1PA15 LINE L1 4552 6165 0 229 176 29 15 chr9 32395023 32395083 -109876361 + (TA)n Simple_repeat Simple_repeat 2 65 -5 189 0 0 0 chr9 32395083 32395104 -109876340 + (TG)n Simple_repeat Simple_repeat 2 22 0 229 176 29 15 chr9 32395104 32395111 -109876333 + (TA)n Simple_repeat Simple_repeat 65 70 0 1195 264 107 15 chr9 32395112 32395570 -109875874 - MLT1D LTR MaLR -3 502 3 1116 278 30 83 chr9 32395572 32395865 -109875579 + L1M4b LINE L1 1754 2061 -4898 2081 100 17 0 chr9 32395865 32396166 -109875278 - AluSc SINE Alu -3 306 1 1116 278 30 83 chr9 32396166 32396574 -109874870 + L1M4b LINE L1 2061 2418 -4541 441 181 35 17 chr9 32396751 32396867 -109874577 + L1PA2 LINE L1 6038 6155 0 207 279 163 0 chr9 32397059 32397145 -109874299 + MIR SINE MIR 119 218 -44 4805 188 35 20 chr9 32398120 32399800 -109871644 - L1MA4 LINE L1 -51 6249 4550 6866 188 23 20 chr9 32399808 32401201 -109870243 + L1PA13 LINE L1 1037 2446 -4351 979 164 12 0 chr9 32401206 32401377 -109870067 + L1PA13 LINE L1 5985 6157 -6 3116 210 26 69 chr9 32401381 32402337 -109869107 - L1MA4 LINE L1 -1609 4537 3623 1395 249 81 20 chr9 32402494 32403085 -109868359 - L1MEc LINE L1 -3244 2971 2345 1413 274 147 27 chr9 32403100 32403625 -109867819 + MLT1E LTR MaLR 3 590 -3 301 233 38 25 chr9 32403685 32403844 -109867600 - L1MEc LINE L1 -4080 2316 2156 2656 88 0 31 chr9 32403872 32404260 -109867184 - L1PB1 LINE L1 0 6151 5776 3629 137 23 2 chr9 32404289 32405020 -109866424 - L1PB1 LINE L1 -360 5791 5039 306 274 84 73 chr9 32405134 32405271 -109866173 - HAL1 LINE L1 -1324 1183 1049 2249 57 0 27 chr9 32405271 32405570 -109865874 + AluY SINE Alu 6 296 -15 306 274 84 73 chr9 32405570 32405706 -109865738 - HAL1 LINE L1 -1458 1049 907 2704 34 0 0 chr9 32405706 32406026 -109865418 - L1PA3 LINE L1 0 6155 5836 4467 23 0 0 chr9 32406026 32406549 -109864895 + L1PA3 LINE L1 5284 5806 -349 21 0 0 0 chr9 32406936 32406957 -109864487 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 32407459 32407480 -109863964 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 32407535 32407556 -109863888 + AT_rich Low_complexity Low_complexity 1 21 0 681 166 225 0 chr9 32407860 32408029 -109863415 - MLT1E1 LTR MaLR -2 652 446 795 283 71 30 chr9 32408031 32408427 -109863017 - MER92A LTR ERV1 0 412 1 24 77 0 0 chr9 32408667 32408719 -109862725 + AT_rich Low_complexity Low_complexity 1 52 0 1467 244 11 22 chr9 32409487 32409844 -109861600 + MLT1A1 LTR MaLR 13 365 0 318 315 60 67 chr9 32410667 32411412 -109860032 - MER110-int LTR ERV1 -1665 2982 2243 1898 191 50 35 chr9 32412102 32412644 -109858800 - MLT2A2 LTR ERVL 0 554 1 26 30 0 0 chr9 32413394 32413427 -109858017 + AT_rich Low_complexity Low_complexity 1 33 0 293 348 70 18 chr9 32417530 32417757 -109853687 + MLT1L LTR MaLR 359 597 -18 19963 30 0 0 chr9 32418316 32421520 -109849924 + L1PA3 LINE L1 2945 6151 -4 22 0 0 0 chr9 32422278 32422300 -109849144 + AT_rich Low_complexity Low_complexity 1 22 0 2228 100 7 0 chr9 32422527 32422827 -109848617 + AluSq SINE Alu 1 302 -11 206 32 32 0 chr9 32422827 32422858 -109848586 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 3400 167 18 10 chr9 32422896 32423524 -109847920 + MER41B LTR ERV1 1 633 -2 257 284 14 27 chr9 32424951 32425025 -109846419 + MLT1I LTR MaLR 98 170 -239 253 305 86 0 chr9 32425328 32425433 -109846011 + MLT1I LTR MaLR 294 407 -2 231 171 14 71 chr9 32425839 32425909 -109845535 - MIR SINE MIR -77 185 120 3115 32 3 0 chr9 32426344 32426722 -109844722 + L1PA2 LINE L1 5777 6155 0 28 48 0 0 chr9 32426722 32426764 -109844680 + AT_rich Low_complexity Low_complexity 1 42 0 26 64 0 0 chr9 32427159 32427206 -109844238 + AT_rich Low_complexity Low_complexity 1 47 0 225 301 106 18 chr9 32427637 32427750 -109843694 + L2 LINE L2 3190 3312 -1 271 353 82 22 chr9 32428287 32428519 -109842925 - L2 LINE L2 -464 2850 2605 29 28 0 0 chr9 32429015 32429051 -109842393 + AT_rich Low_complexity Low_complexity 1 36 0 1631 164 7 18 chr9 32429470 32429751 -109841693 + MSTB LTR MaLR 1 278 -148 1497 182 40 3 chr9 32429805 32430107 -109841337 + MSTB-int LTR MaLR 1 313 -1338 959 193 84 6 chr9 32430109 32430487 -109840957 + MSTA LTR MaLR 2 428 0 6569 217 19 14 chr9 32430489 32430559 -109840885 + MSTB-int LTR MaLR 312 380 -1271 2253 114 0 6 chr9 32430559 32430874 -109840570 + AluSp SINE Alu 1 313 0 6569 217 19 14 chr9 32430874 32432135 -109839309 + MSTB-int LTR MaLR 380 1651 0 2213 172 35 33 chr9 32432135 32432560 -109838884 + MSTB LTR MaLR 1 426 0 910 175 95 136 chr9 32432607 32433092 -109838352 - MER4C LTR ERV1 0 465 1 50 31 0 0 chr9 32434058 32434122 -109837322 + AT_rich Low_complexity Low_complexity 1 64 0 771 241 48 22 chr9 32434472 32434787 -109836657 - L1MDa LINE L1 -3940 2466 2144 4474 249 68 37 chr9 32435149 32436819 -109834625 + L1M4 LINE L1 3 1877 -4848 447 263 32 21 chr9 32436893 32437083 -109834361 + L1M4 LINE L1 1049 1240 -5302 46 45 0 0 chr9 32437083 32437150 -109834294 + AT_rich Low_complexity Low_complexity 1 67 0 254 158 73 0 chr9 32437279 32437361 -109834083 + (TA)n Simple_repeat Simple_repeat 1 88 0 250 103 0 0 chr9 32437419 32437458 -109833986 + L1MA7 LINE L1 6211 6249 -42 10444 212 32 15 chr9 32437490 32440919 -109830525 - L1MA7 LINE L1 -43 6248 2763 1188 260 112 49 chr9 32440954 32441687 -109829757 + L1M4 LINE L1 1718 2566 -4078 1812 164 30 3 chr9 32441687 32441991 -109829453 + AluSx SINE Alu 1 312 0 1188 260 112 49 chr9 32441991 32442369 -109829075 + L1M4 LINE L1 2566 2919 -3725 4776 151 15 7 chr9 32442415 32442848 -109828596 - L1PA15 LINE L1 -2 6163 5735 2529 126 87 0 chr9 32442848 32442885 -109828559 - MLT2A2 LTR ERVL -3 450 418 420 118 0 0 chr9 32442885 32442953 -109828491 + (TA)n Simple_repeat Simple_repeat 2 69 0 2529 126 87 0 chr9 32442953 32443329 -109828115 - MLT2A2 LTR ERVL -35 418 1 4776 151 15 7 chr9 32443329 32444206 -109827238 - L1PA15 LINE L1 -430 5735 4857 1696 236 53 61 chr9 32444308 32445298 -109826146 - L1MDa LINE L1 -4416 1990 827 715 239 74 0 chr9 32445298 32445474 -109825970 - LTR47A LTR ERVL 0 452 264 1763 293 94 31 chr9 32445748 32446525 -109824919 - L1MDa LINE L1 -5578 831 6 1984 113 3 67 chr9 32446989 32447316 -109824128 + AluY SINE Alu 1 306 -5 237 309 0 0 chr9 32448913 32449036 -109822408 + (TA)n Simple_repeat Simple_repeat 1 123 0 189 121 0 0 chr9 32449295 32449328 -109822116 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr9 32449586 32449609 -109821835 + AT_rich Low_complexity Low_complexity 1 23 0 300 321 109 36 chr9 32451338 32451612 -109819832 - L2 LINE L2 -689 2625 2332 35 83 0 0 chr9 32452499 32452583 -109818861 + AT_rich Low_complexity Low_complexity 1 84 0 39 38 0 0 chr9 32452718 32452771 -109818673 + AT_rich Low_complexity Low_complexity 1 53 0 1500 199 86 158 chr9 32453136 32454081 -109817363 - LTR28 LTR ERV1 -1 1019 1 2183 84 0 0 chr9 32454642 32454916 -109816528 + AluSg SINE Alu 1 274 -36 246 32 0 0 chr9 32454922 32454953 -109816491 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 198 103 0 0 chr9 32455122 32455151 -109816293 + (TA)n Simple_repeat Simple_repeat 1 29 0 236 212 15 0 chr9 32455663 32455729 -109815715 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 1905 187 6 2 chr9 32456478 32456825 -109814619 - MER7A DNA MER2_type 0 346 4 23 68 0 0 chr9 32456846 32456890 -109814554 + AT_rich Low_complexity Low_complexity 1 44 0 5644 135 33 3 chr9 32458246 32459122 -109812322 + THE1B-int LTR MaLR 679 1580 0 1798 148 84 26 chr9 32459122 32459466 -109811978 + THE1B LTR MaLR 1 364 0 3682 215 58 25 chr9 32459468 32460993 -109810451 - L1MA5 LINE L1 -309 6693 5122 41363 42 29 1 chr9 32461000 32466965 -109804479 + L1PA4 LINE L1 1 6131 -24 1541 82 0 0 chr9 32466965 32467159 -109804285 + AluY SINE Alu 101 294 -17 6123 242 71 17 chr9 32467912 32471539 -109799905 - L1MA5 LINE L1 -1871 4977 1153 892 319 30 0 chr9 32471782 32472048 -109799396 + LTR40a LTR ERVL 244 517 -2 1606 182 98 6 chr9 32472667 32473002 -109798442 + MLT1B LTR MaLR 20 385 -5 2243 95 7 0 chr9 32473123 32473417 -109798027 + AluSx SINE Alu 1 296 -16 425 254 116 7 chr9 32474500 32474638 -109796806 + MER21B LTR ERV1 19 171 -692 4013 119 5 5 chr9 32474752 32475367 -109796077 - L1PB2 LINE L1 -2 6149 5535 445 139 13 13 chr9 32475367 32475436 -109796008 + L1PA10 LINE L1 6085 6163 -5 1438 97 0 0 chr9 32475444 32475650 -109795794 + L1P5 LINE L1 5315 5520 -631 357 225 136 75 chr9 32475654 32475934 -109795510 - L1MEc LINE L1 -4087 2309 2013 521 288 134 16 chr9 32476148 32476707 -109794737 + L1MC/D LINE L1 5044 5665 -577 197 390 0 0 chr9 32476828 32476887 -109794557 + L2 LINE L2 2986 3044 -228 1009 217 116 31 chr9 32477219 32477546 -109793898 + MLT1A1 LTR MaLR 11 365 0 530 319 150 44 chr9 32477823 32478510 -109792934 + L1 LINE L1 3425 4184 -1962 584 218 133 37 chr9 32478605 32478981 -109792463 + L1 LINE L1 4297 4708 -1438 668 248 48 64 chr9 32479090 32479168 -109792276 - L1M1 LINE L1 -4147 3418 3340 300 91 0 0 chr9 32479168 32479212 -109792232 + (TA)n Simple_repeat Simple_repeat 1 44 0 668 248 48 64 chr9 32479212 32479552 -109791892 - L1M1 LINE L1 -4225 3340 3007 22 0 0 0 chr9 32479568 32479590 -109791854 + AT_rich Low_complexity Low_complexity 1 22 0 5202 31 0 0 chr9 32479590 32480202 -109791242 - L1PA4 LINE L1 -8 6147 5536 27 0 0 0 chr9 32481333 32481360 -109790084 + AT_rich Low_complexity Low_complexity 1 27 0 2748 7 0 0 chr9 32481458 32481761 -109789683 + AluYa5 SINE Alu 1 303 -8 974 184 11 0 chr9 32482743 32482922 -109788522 + L1PA16 LINE L1 5862 6042 -124 258 339 87 8 chr9 32482955 32483082 -109788362 + L2 LINE L2 3172 3308 -5 24 32 0 0 chr9 32483964 32483995 -109787449 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr9 32484073 32484106 -109787338 + AT_rich Low_complexity Low_complexity 1 33 0 374 344 71 6 chr9 32484152 32484335 -109787109 - MIR SINE MIR -38 224 30 506 236 9 0 chr9 32484535 32484645 -109786799 + MLT1C LTR MaLR 357 467 0 319 295 14 65 chr9 32485400 32485539 -109785905 + MIR SINE MIR 121 252 -10 323 364 143 24 chr9 32485894 32486350 -109785094 + L2 LINE L2 1964 2473 -841 26 0 0 0 chr9 32486396 32486422 -109785022 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr9 32486533 32486563 -109784881 + AT_rich Low_complexity Low_complexity 1 30 0 1824 246 55 8 chr9 32487888 32488346 -109783098 + L1 LINE L1 4839 5325 -821 445 138 43 0 chr9 32488346 32488440 -109783004 + L1PA13 LINE L1 6066 6163 0 1824 246 55 8 chr9 32488440 32488493 -109782951 + L1 LINE L1 5325 5374 -772 1540 130 13 0 chr9 32488486 32488724 -109782720 - L1P4 LINE L1 -348 5813 5573 * 4160 35 0 0 chr9 32488824 32489332 -109782112 + L1P LINE L1 4278 4785 -1361 309 287 70 7 chr9 32489538 32489581 -109781863 - L1MA10 LINE L1 -14 6320 6278 1094 249 105 56 chr9 32489581 32490114 -109781330 - L1ME1 LINE L1 -48 6118 5560 27 49 0 0 chr9 32490579 32490620 -109780824 + AT_rich Low_complexity Low_complexity 1 41 0 4526 200 18 16 chr9 32490623 32491390 -109780054 - L1MA7 LINE L1 -27 6264 5500 1981 151 25 25 chr9 32491390 32491754 -109779690 - THE1B LTR MaLR 0 364 1 10928 116 7 0 chr9 32491754 32493323 -109778121 - THE1B-int LTR MaLR 0 1580 1 1902 148 27 30 chr9 32493323 32493688 -109777756 - THE1B LTR MaLR 0 364 1 4526 200 18 16 chr9 32493688 32494109 -109777335 - L1MA7 LINE L1 -790 5501 5069 1222 142 5 0 chr9 32494108 32494320 -109777124 - L1MA7 LINE L1 -1398 4748 4536 * 3649 215 32 7 chr9 32494336 32495228 -109776216 - L1 LINE L1 -1101 5045 4131 35 54 0 0 chr9 32495436 32495492 -109775952 + AT_rich Low_complexity Low_complexity 1 56 0 21 89 0 0 chr9 32495825 32495881 -109775563 + AT_rich Low_complexity Low_complexity 1 56 0 435 319 172 4 chr9 32496034 32496266 -109775178 - LTR33A LTR ERVL 0 523 253 231 258 41 52 chr9 32496327 32496424 -109775020 - LTR33A LTR ERVL -393 130 35 1891 149 76 15 chr9 32496484 32496827 -109774617 + THE1B LTR MaLR 1 364 0 869 140 31 3 chr9 32497148 32497165 -109774279 + L1P5 LINE L1 5318 5333 -821 3380 156 20 34 chr9 32497165 32497502 -109773942 - L1PB3 LINE L1 -13 6141 5801 282 56 0 0 chr9 32497502 32497538 -109773906 + (TG)n Simple_repeat Simple_repeat 2 37 0 3380 156 20 34 chr9 32497538 32497571 -109773873 - L1PB3 LINE L1 -353 5801 5769 2562 37 0 0 chr9 32497571 32497867 -109773577 + AluY SINE Alu 1 296 -15 3380 156 20 34 chr9 32497867 32498147 -109773297 - L1PB3 LINE L1 -385 5769 5499 869 140 31 3 chr9 32498147 32498306 -109773138 + L1PB3 LINE L1 5333 5492 -662 21 0 0 0 chr9 32499559 32499580 -109771864 + AT_rich Low_complexity Low_complexity 1 21 0 322 223 50 79 chr9 32499586 32499725 -109771719 + L1ME LINE L1 5682 5816 -305 27 29 0 0 chr9 32500890 32500924 -109770520 + AT_rich Low_complexity Low_complexity 1 34 0 1602 186 11 0 chr9 32501216 32501495 -109769949 - LTR26 LTR ERV1 0 603 322 657 349 62 27 chr9 32503383 32503719 -109767725 + ERVL LTR ERVL 4455 4815 -949 197 32 0 32 chr9 32503719 32503750 -109767694 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 657 349 62 27 chr9 32503750 32503898 -109767546 + ERVL LTR ERVL 4815 4956 -808 719 269 55 70 chr9 32504555 32504913 -109766531 + LTR16A LTR ERVL 90 456 -1 207 139 0 0 chr9 32505000 32505036 -109766408 + (CA)n Simple_repeat Simple_repeat 2 37 0 402 205 0 13 chr9 32505666 32505744 -109765700 + AluY SINE Alu 216 292 -19 260 298 69 8 chr9 32505970 32506101 -109765343 - MIR SINE MIR -56 206 68 183 289 128 54 chr9 32506192 32506434 -109765010 - L2 LINE L2 -683 2631 2372 2328 78 0 10 chr9 32506468 32506775 -109764669 + AluSq SINE Alu 1 304 -9 420 324 48 24 chr9 32507998 32508208 -109763236 + MIR SINE MIR 48 262 0 5394 132 6 6 chr9 32508241 32509163 -109762281 - L1PA13 LINE L1 -5 6158 5227 276 91 0 0 chr9 32510536 32510580 -109760864 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 1337 245 85 76 chr9 32511556 32512426 -109759018 - LTR1B LTR ERV1 -6 1014 1 23 0 0 0 chr9 32513249 32513272 -109758172 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr9 32513498 32513534 -109757910 + AT_rich Low_complexity Low_complexity 1 36 0 578 274 56 41 chr9 32513690 32513887 -109757557 - MIR SINE MIR -38 224 25 306 0 0 0 chr9 32513945 32513979 -109757465 + (TG)n Simple_repeat Simple_repeat 2 35 0 2411 175 39 50 chr9 32514576 32515120 -109756324 - L1MA10 LINE L1 -61 6273 5736 1627 149 8 102 chr9 32515155 32515233 -109756211 + L1M3 LINE L1 5412 5496 -838 1645 163 14 14 chr9 32515233 32515521 -109755923 - AluJb SINE Alu -18 294 7 1627 149 8 102 chr9 32515521 32515824 -109755620 + L1M3 LINE L1 5496 5757 -577 984 269 130 7 chr9 32515800 32516347 -109755097 - L1M4 LINE L1 -1368 4778 4165 * 1560 262 60 44 chr9 32516356 32517278 -109754166 - L1M4 LINE L1 -2193 3953 3010 2110 113 0 3 chr9 32517278 32517587 -109753857 - AluSg SINE Alu -2 308 1 1560 262 60 44 chr9 32517587 32517712 -109753732 - L1M4 LINE L1 -3136 3010 2889 1498 137 44 15 chr9 32517812 32518083 -109753361 - LTR26 LTR ERV1 -316 287 9 389 191 38 0 chr9 32518726 32518907 -109752537 - L1MA4A LINE L1 -23 6280 6032 223 239 0 28 chr9 32518953 32519024 -109752420 + T-rich Low_complexity Low_complexity 5 73 0 24 32 0 0 chr9 32519231 32519262 -109752182 + AT_rich Low_complexity Low_complexity 1 31 0 2387 75 0 3 chr9 32519934 32520239 -109751205 - AluY SINE Alu -2 309 6 188 111 0 83 chr9 32520263 32520299 -109751145 + L3b LINE CR1 1529 1561 -22 520 221 97 10 chr9 32520458 32520653 -109750791 - L1M4 LINE L1 -1571 4575 4364 228 212 30 15 chr9 32520720 32520786 -109750658 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 3756 215 127 88 chr9 32520942 32522630 -109748814 + MER52A LTR ERV1 1 1755 0 1930 101 11 24 chr9 32522732 32523066 -109748378 - AluSx SINE Alu 0 331 2 2318 182 45 2 chr9 32523268 32523784 -109747660 + L1MB3 LINE L1 5643 6180 -3 437 136 0 0 chr9 32523870 32523936 -109747508 + AluS SINE Alu 1 66 -245 347 326 134 11 chr9 32525501 32525688 -109745756 + MIR SINE MIR 48 257 -5 1477 297 87 54 chr9 32526901 32527869 -109743575 + L1MC/D LINE L1 727 1661 -5461 222 116 0 0 chr9 32527869 32527912 -109743532 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1477 297 87 54 chr9 32527912 32528571 -109742873 + L1MC/D LINE L1 1661 2630 -4492 1787 172 25 3 chr9 32528571 32528896 -109742548 - MER1B DNA MER1_type -2 335 4 1477 297 87 54 chr9 32528896 32529076 -109742368 + L1MC/D LINE L1 2630 2803 -4319 42 36 0 0 chr9 32529217 32529273 -109742171 + AT_rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chr9 32529304 32529332 -109742112 + AT_rich Low_complexity Low_complexity 1 28 0 942 266 96 25 chr9 32529743 32530287 -109741157 + L1MC/D LINE L1 2747 3287 -3654 882 259 38 9 chr9 32530296 32530636 -109740808 + L1MC/D LINE L1 5696 6045 -896 5551 147 4 5 chr9 32530640 32531559 -109739885 + L1P LINE L1 3776 4693 -1453 400 311 81 35 chr9 32531702 32532064 -109739380 - L1M4 LINE L1 -1548 4598 4190 2210 78 0 0 chr9 32532064 32532381 -109739063 + AluY SINE Alu 1 317 0 400 311 81 35 chr9 32532381 32532674 -109738770 - L1M4 LINE L1 -1956 4190 3912 * 2779 191 63 22 chr9 32532670 32533170 -109738274 + L1MB2 LINE L1 5164 5707 -464 1965 134 69 29 chr9 32533170 32533520 -109737924 + THE1B LTR MaLR 1 364 0 2779 191 63 22 chr9 32533520 32533777 -109737667 + L1MB2 LINE L1 5707 5952 -219 2864 292 47 94 chr9 32534442 32535117 -109736327 - L1MEc LINE L1 -2093 4551 3846 1282 113 5 0 chr9 32535117 32535303 -109736141 - AluSg/x SINE Alu -1 308 122 2864 292 47 94 chr9 32535303 32536523 -109734921 - L1MEc LINE L1 -2798 3846 2625 383 330 108 35 chr9 32536536 32536990 -109734454 - L1MEc LINE L1 -5981 561 75 22 0 0 0 chr9 32538390 32538412 -109733032 + AT_rich Low_complexity Low_complexity 1 22 0 351 313 74 42 chr9 32538790 32539007 -109732437 + L1MC/D LINE L1 6089 6312 -2291 28 0 0 0 chr9 32539313 32539341 -109732103 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr9 32539395 32539423 -109732021 + AT_rich Low_complexity Low_complexity 1 28 0 359 368 7 7 chr9 32539861 32539997 -109731447 - L2 LINE L2 -469 2845 2710 1311 165 54 17 chr9 32540176 32540473 -109730971 + L1MA7 LINE L1 5984 6291 0 702 286 11 11 chr9 32540478 32540656 -109730788 + MIR SINE MIR 18 195 -67 283 315 310 0 chr9 32540752 32541158 -109730286 - L2 LINE L2 -748 2566 2035 1881 134 3 10 chr9 32541763 32542054 -109729390 - AluSx SINE Alu -20 292 4 209 95 0 24 chr9 32542190 32542232 -109729212 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 240 413 70 0 chr9 32543234 32543476 -109727968 + MIR SINE MIR 3 261 -1 6197 97 13 3 chr9 32544627 32545963 -109725481 + L1PA10 LINE L1 4821 6164 -4 672 235 59 4 chr9 32545983 32546215 -109725229 + L1ME LINE L1 5308 5553 -609 22 0 0 0 chr9 32547440 32547462 -109723982 + AT_rich Low_complexity Low_complexity 1 22 0 7476 30 6 0 chr9 32551945 32553316 -109718128 - L1PA3 LINE L1 -7 6148 4772 17870 36 0 0 chr9 32553316 32555518 -109715926 + L1P LINE L1 1521 3722 -2424 21 0 0 0 chr9 32556281 32556302 -109715142 + AT_rich Low_complexity Low_complexity 1 21 0 2274 188 19 0 chr9 32556309 32556773 -109714671 - L1MA4 LINE L1 -16 6284 5812 1102 179 44 0 chr9 32556812 32557111 -109714333 - L1MA4 LINE L1 -743 5403 5189 1089 112 0 10 chr9 32558027 32558305 -109713139 - THE1-int LTR MaLR -751 829 483 243 188 0 0 chr9 32558990 32559038 -109712406 + CT-rich Low_complexity Low_complexity 2 49 0 3565 88 10 0 chr9 32559193 32559682 -109711762 - THE1-int LTR MaLR -1085 495 2 973 320 85 54 chr9 32559781 32560194 -109711250 - HERV16 LTR ERVL -1989 3007 2609 2179 78 0 63 chr9 32560194 32560526 -109710918 - AluY SINE Alu 0 311 1 973 320 85 54 chr9 32560526 32562000 -109709444 - HERV16 LTR ERVL -2387 2609 999 536 222 23 5 chr9 32562030 32562179 -109709265 + L1MC3 LINE L1 7637 7995 0 28 29 0 0 chr9 32562216 32562251 -109709193 + AT_rich Low_complexity Low_complexity 1 35 0 221 164 0 36 chr9 32563103 32563158 -109708286 + (CATA)n Simple_repeat Simple_repeat 2 54 0 209 213 0 0 chr9 32563602 32563649 -109707795 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 327 345 20 7 chr9 32565212 32565360 -109706084 - L1MEc LINE L1 -6041 355 206 22 35 0 0 chr9 32565493 32565522 -109705922 + AT_rich Low_complexity Low_complexity 1 29 0 286 218 78 63 chr9 32565545 32565687 -109705757 - L1MCc LINE L1 -4932 1491 1348 603 314 74 19 chr9 32566949 32567315 -109704129 - L1MCc LINE L1 -5406 1525 1140 261 204 41 51 chr9 32567585 32567683 -109703761 + L1MC4 LINE L1 6614 6710 -1332 1527 245 20 9 chr9 32567720 32568067 -109703377 - MLT1A1 LTR MaLR -12 353 3 772 224 87 20 chr9 32569102 32569356 -109702088 - LTR37B LTR ERV1 0 468 198 430 247 20 13 chr9 32569590 32569740 -109701704 - L1MA10 LINE L1 -8 6326 6176 339 225 22 11 chr9 32569816 32569905 -109701539 - L1M4 LINE L1 -1210 4936 4847 * 9778 105 14 7 chr9 32569891 32570402 -109701042 + L1P LINE L1 2769 3275 -2871 207 0 0 0 chr9 32570402 32570425 -109701019 + (CA)n Simple_repeat Simple_repeat 2 24 0 9778 105 14 7 chr9 32570425 32571419 -109700025 + L1P LINE L1 3275 4284 -1862 1166 233 56 50 chr9 32571564 32572035 -109699409 - L1MC/D LINE L1 -720 5446 4997 1600 204 28 45 chr9 32572035 32572432 -109699012 + MLT1B LTR MaLR 1 390 0 1166 233 56 50 chr9 32572432 32572616 -109698828 - L1MC/D LINE L1 -1169 4997 4816 924 128 0 0 chr9 32572626 32572767 -109698677 - L1PA16 LINE L1 -3 6163 6023 3848 26 2 0 chr9 32572789 32573242 -109698202 - L1PA3 LINE L1 -5 6150 5697 1347 13 0 0 chr9 32573242 32573393 -109698051 + L1PA3 LINE L1 5528 5678 -477 1272 108 16 0 chr9 32573393 32573579 -109697865 - MER9 LTR ERVK -322 189 1 309 290 40 8 chr9 32573878 32574002 -109697442 + L1ME LINE L1 5345 5472 -692 6214 29 2 2 chr9 32574758 32575733 -109695711 - L1PA3 LINE L1 -149 6006 5032 6263 24 0 0 chr9 32575733 32576477 -109694967 + L1PA3 LINE L1 4317 5060 -1086 277 224 40 0 chr9 32576480 32576556 -109694888 - L1PA16 LINE L1 -137 6029 5951 * 849 239 71 11 chr9 32576550 32576830 -109694614 - L1M4 LINE L1 -1338 4808 4512 22 0 0 0 chr9 32577190 32577212 -109694232 + AT_rich Low_complexity Low_complexity 1 22 0 1167 277 78 8 chr9 32577226 32577609 -109693835 + MER92A LTR ERV1 3 412 0 2223 94 0 3 chr9 32577702 32577999 -109693445 + AluY SINE Alu 1 296 -15 779 237 63 0 chr9 32578534 32578724 -109692720 - MER58 DNA MER1_type -121 220 19 21 36 0 0 chr9 32578784 32578812 -109692632 + AT_rich Low_complexity Low_complexity 1 28 0 332 240 62 17 chr9 32578901 32579080 -109692364 - MER53 DNA DNA 0 189 3 769 235 34 12 chr9 32579152 32579525 -109691919 - MER114 LTR ERV 0 648 241 478 197 39 31 chr9 32579633 32579760 -109691684 - MER114 LTR ERV -465 183 56 234 0 0 0 chr9 32580297 32580323 -109691121 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 144 67 122 chr9 32580323 32580413 -109691031 - L1MC4 LINE L1 -1339 6703 6619 324 85 0 0 chr9 32580416 32580463 -109690981 + MADE1 DNA Mariner 33 79 -1 200 311 0 0 chr9 32580463 32580524 -109690920 + (TA)n Simple_repeat Simple_repeat 2 62 0 649 245 15 81 chr9 32580968 32581241 -109690203 + LTR41 LTR ERVL 506 760 -13 1313 330 169 13 chr9 32581255 32582151 -109689293 - L2 LINE L2 -588 2726 1692 1128 215 37 8 chr9 32582158 32582400 -109689044 + MLT1A1 LTR MaLR 113 361 -4 1022 244 30 20 chr9 32582409 32582704 -109688740 + MER89-int LTR ERV1 1361 1658 -5143 1252 92 0 0 chr9 32582760 32582933 -109688511 - AluYa5 SINE Alu -5 306 134 709 185 0 0 chr9 32584874 32585004 -109686440 + AluJb SINE Alu 182 311 -1 251 175 18 0 chr9 32585025 32585082 -109686362 + (TA)n Simple_repeat Simple_repeat 1 58 0 1335 282 144 71 chr9 32585082 32586023 -109685421 - L2 LINE L2 -1612 1702 693 21 36 0 0 chr9 32587101 32587129 -109684315 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 32589696 32589727 -109681717 + AT_rich Low_complexity Low_complexity 1 31 0 279 192 0 0 chr9 32589939 32589991 -109681453 + L2 LINE L2 3262 3313 0 22 35 0 0 chr9 32590004 32590033 -109681411 + AT_rich Low_complexity Low_complexity 1 29 0 356 315 24 0 chr9 32590442 32590569 -109680875 - MLT1E1 LTR MaLR -16 533 404 243 0 0 0 chr9 32591831 32591858 -109679586 + (TTG)n Simple_repeat Simple_repeat 1 27 0 9464 44 1 0 chr9 32592058 32593215 -109678229 - L1PA5 LINE L1 -1122 5024 3867 7102 46 5 1 chr9 32593215 32594352 -109677092 + L1PA5 LINE L1 5012 6151 -3 26 0 0 0 chr9 32594352 32594378 -109677066 + AT_rich Low_complexity Low_complexity 1 26 0 231 88 0 0 chr9 32595047 32595081 -109676363 + (TG)n Simple_repeat Simple_repeat 1 34 0 299 171 66 53 chr9 32595121 32595197 -109676247 - L1MCb LINE L1 -5561 484 408 1124 234 48 7 chr9 32595197 32595466 -109675978 - MLT1B LTR MaLR 0 390 111 1241 251 61 15 chr9 32595540 32595985 -109675459 + L1ME LINE L1 1249 1868 -4558 22 0 0 0 chr9 32596003 32596025 -109675419 + AT_rich Low_complexity Low_complexity 1 22 0 1063 203 67 45 chr9 32596060 32596390 -109675054 + L1ME LINE L1 2062 2398 -4028 1164 216 68 85 chr9 32597156 32597320 -109674124 + L1ME LINE L1 5380 5545 -899 228 67 0 0 chr9 32597320 32597350 -109674094 + (CA)n Simple_repeat Simple_repeat 1 30 0 1164 216 68 85 chr9 32597350 32597795 -109673649 + L1ME LINE L1 5545 5976 -468 1268 275 56 29 chr9 32597807 32598251 -109673193 - MLT1E2 LTR MaLR 0 626 171 1589 60 0 0 chr9 32598252 32598452 -109672992 - L1PA8 LINE L1 -576 5596 5397 4076 73 3 28 chr9 32598452 32598542 -109672902 + L1PA8 LINE L1 5596 5687 -485 2066 117 7 13 chr9 32598542 32598842 -109672602 + AluY SINE Alu 1 298 -13 4076 73 3 28 chr9 32598842 32599325 -109672119 + L1PA8 LINE L1 5687 6158 -14 475 294 65 11 chr9 32599332 32599516 -109671928 - MLT1E1 LTR MaLR -404 250 57 286 325 59 44 chr9 32599647 32599935 -109671509 - MLT1G LTR MaLR -1 594 192 1136 208 4 49 chr9 32600483 32600748 -109670696 - MLT1A1 LTR MaLR 0 365 113 473 240 112 0 chr9 32600751 32600876 -109670568 + LTR52-int LTR ERVL 785 923 -2633 192 77 0 0 chr9 32603078 32603104 -109668340 + (A)n Simple_repeat Simple_repeat 1 26 0 1844 287 50 73 chr9 32603147 32603945 -109667499 + LTR52-int LTR ERVL 2246 3025 -531 243 236 9 94 chr9 32603953 32604059 -109667385 - MER76 LTR ERV -193 495 399 1303 230 78 14 chr9 32604059 32604403 -109667041 + LTR52-int LTR ERVL 3140 3505 -51 761 286 114 19 chr9 32604412 32604608 -109666836 + LTR52 LTR ERVL 2 178 -243 336 24 0 0 chr9 32604608 32604649 -109666795 + (CA)n Simple_repeat Simple_repeat 2 42 0 761 286 114 19 chr9 32604649 32604812 -109666632 + LTR52 LTR ERVL 178 395 -26 23 68 0 0 chr9 32605014 32605058 -109666386 + AT_rich Low_complexity Low_complexity 1 44 0 187 427 10 10 chr9 32606391 32606494 -109664950 + L2 LINE L2 3192 3294 -19 25 65 0 0 chr9 32606575 32606621 -109664823 + AT_rich Low_complexity Low_complexity 1 46 0 448 164 0 0 chr9 32606733 32606800 -109664644 + Tigger2 DNA MER2_type 1 67 -2651 * 2344 166 58 2 chr9 32606786 32607213 -109664231 + Tigger2 DNA MER2_type 2267 2717 -1 220 292 14 14 chr9 32607396 32607468 -109663976 + MIR3 SINE MIR 97 168 -40 576 240 27 27 chr9 32607602 32607748 -109663696 + MER58B DNA MER1_type 189 334 -7 297 0 0 0 chr9 32608706 32608739 -109662705 + (TG)n Simple_repeat Simple_repeat 2 34 0 1402 199 79 8 chr9 32609190 32609571 -109661873 - L1MA9 LINE L1 0 6312 5905 1889 182 120 5 chr9 32609579 32609963 -109661481 - MSTA LTR MaLR 0 428 1 219 36 0 0 chr9 32611309 32611337 -109660107 + (GA)n Simple_repeat Simple_repeat 1 28 0 2018 105 3 18 chr9 32611496 32611806 -109659638 + AluSx SINE Alu 1 306 0 4793 184 21 21 chr9 32611848 32613370 -109658074 - L1PA16 LINE L1 -1 6165 4643 615 139 0 0 chr9 32613375 32613476 -109657968 + MER57A-int LTR ERV1 7437 7537 0 2262 169 10 0 chr9 32613478 32613875 -109657569 + MER57A LTR ERV1 3 403 0 36 0 0 0 chr9 32614550 32614586 -109656858 + AT_rich Low_complexity Low_complexity 1 36 0 645 178 30 0 chr9 32614626 32614761 -109656683 + L1MEc LINE L1 42 180 -6243 409 326 77 0 chr9 32614897 32615093 -109656351 + L1MEc LINE L1 2684 2894 -4228 1380 195 37 45 chr9 32615125 32615503 -109655941 + L1MA8 LINE L1 5926 6291 0 611 292 105 16 chr9 32615515 32615963 -109655481 + L1MEc LINE L1 2916 3403 -3538 469 215 30 15 chr9 32615993 32616128 -109655316 + L1ME2 LINE L1 5398 5534 -628 322 273 187 0 chr9 32616179 32616318 -109655126 + L1ME2 LINE L1 6000 6164 0 276 30 0 0 chr9 32616795 32616828 -109654616 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr9 32616887 32616908 -109654536 + (TATAA)n Simple_repeat Simple_repeat 5 25 0 183 282 42 14 chr9 32617149 32617220 -109654224 + L2 LINE L2 3226 3298 -15 22 0 0 0 chr9 32617665 32617687 -109653757 + AT_rich Low_complexity Low_complexity 1 22 0 532 183 0 0 chr9 32617704 32617808 -109653636 - L1PA16 LINE L1 -2 6164 6061 260 291 42 21 chr9 32618598 32618787 -109652657 + L1MEc LINE L1 3837 4029 -2912 23 0 0 0 chr9 32619126 32619149 -109652295 + AT_rich Low_complexity Low_complexity 1 23 0 215 182 23 0 chr9 32619157 32619201 -109652243 + (TA)n Simple_repeat Simple_repeat 2 46 0 2308 74 3 10 chr9 32619854 32620163 -109651281 - AluY SINE Alu -4 307 1 22 35 0 0 chr9 32620534 32620563 -109650881 + AT_rich Low_complexity Low_complexity 1 29 0 322 301 90 8 chr9 32620942 32621075 -109650369 - MIR SINE MIR -71 191 48 476 286 144 21 chr9 32621324 32622045 -109649399 + L1MEc LINE L1 4608 5417 -1524 291 318 118 20 chr9 32622305 32622500 -109648944 - L2 LINE L2 -929 2385 2172 1503 202 58 21 chr9 32622581 32622957 -109648487 - MLT1B LTR MaLR 0 390 1 350 209 0 19 chr9 32623105 32623210 -109648234 + GA-rich Low_complexity Low_complexity 2 104 0 6054 127 27 32 chr9 32623278 32624355 -109647089 - MER11C LTR ERVK 0 1071 1 1377 149 47 93 chr9 32624689 32625010 -109646434 + AluJb SINE Alu 1 306 -6 239 352 96 32 chr9 32627442 32627661 -109643783 - MIR SINE MIR -10 252 20 896 168 21 11 chr9 32627672 32627862 -109643582 - L1MA6 LINE L1 0 6300 6109 205 310 48 96 chr9 32628615 32628844 -109642600 - L2 LINE L2 -16 3297 3080 631 256 20 10 chr9 32628861 32629056 -109642388 - MER105 DNA DNA -4 200 4 184 364 35 63 chr9 32629061 32629204 -109642240 - L2 LINE L2 -259 3054 2916 205 173 25 49 chr9 32630643 32630724 -109640720 + (TA)n Simple_repeat Simple_repeat 1 79 0 365 281 138 24 chr9 32631625 32631835 -109639609 - HAL1 LINE L1 -590 1917 1684 239 286 138 20 chr9 32631893 32632089 -109639355 - HAL1 LINE L1 -902 1605 1387 386 265 101 69 chr9 32632158 32632296 -109639148 - HAL1 LINE L1 -1223 1284 1152 396 0 0 0 chr9 32632296 32632340 -109639104 + (CA)n Simple_repeat Simple_repeat 2 45 0 386 265 101 69 chr9 32632340 32632618 -109638826 - HAL1 LINE L1 -1355 1152 818 317 129 0 48 chr9 32634247 32634309 -109637135 + L1PA5 LINE L1 6083 6141 -13 380 246 26 73 chr9 32634349 32634540 -109636904 - L2 LINE L2 -36 3277 3096 655 285 95 29 chr9 32636169 32636589 -109634855 + L1ME3A LINE L1 5711 6158 -12 658 250 35 6 chr9 32637299 32637471 -109633973 - MER45A DNA AcHobo -1 177 1 1306 267 74 8 chr9 32637859 32638237 -109633207 + MLT2B1 LTR ERVL 83 485 -35 26 74 0 0 chr9 32639388 32639442 -109632002 + AT_rich Low_complexity Low_complexity 1 54 0 454 258 48 8 chr9 32640956 32641080 -109630364 - MIR SINE MIR -86 176 48 21 71 0 0 chr9 32641144 32641186 -109630258 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr9 32641512 32641545 -109629899 + AT_rich Low_complexity Low_complexity 1 33 0 579 323 5 5 chr9 32642031 32642223 -109629221 + MIR SINE MIR 68 259 -3 369 216 0 0 chr9 32643177 32643265 -109628179 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 1976 114 60 6 chr9 32643605 32643922 -109627522 - MER9 LTR ERVK 0 511 178 3880 24 2 0 chr9 32643928 32644386 -109627058 - L1PA2 LINE L1 0 6155 5697 1347 13 0 0 chr9 32644386 32644537 -109626907 + L1PA2 LINE L1 5528 5678 -477 1283 102 16 0 chr9 32644537 32644723 -109626721 - MER9 LTR ERVK -322 189 1 309 290 40 8 chr9 32645022 32645146 -109626298 + L1ME LINE L1 5345 5472 -690 1025 309 86 27 chr9 32645487 32645964 -109625480 + L1ME3 LINE L1 4964 5411 -751 333 0 0 0 chr9 32645964 32646001 -109625443 + (CA)n Simple_repeat Simple_repeat 2 38 0 1025 309 86 27 chr9 32646001 32646563 -109624881 + L1ME3 LINE L1 5411 6074 -88 594 324 152 3 chr9 32646649 32646979 -109624465 - L2 LINE L2 -698 2616 2238 26 0 0 0 chr9 32647160 32647186 -109624258 + AT_rich Low_complexity Low_complexity 1 26 0 219 69 0 0 chr9 32647284 32647313 -109624131 + (TA)n Simple_repeat Simple_repeat 1 29 0 487 230 22 7 chr9 32647753 32647892 -109623552 - Charlie1 DNA MER1_type -1 2760 2620 * 849 270 35 0 chr9 32647874 32648104 -109623340 - Charlie1 DNA MER1_type -2522 239 2 390 298 136 14 chr9 32648226 32648505 -109622939 + L1M4 LINE L1 3048 3360 -2786 1417 191 0 52 chr9 32649673 32649961 -109621483 + MER44D DNA MER2_type 156 483 -122 458 240 0 40 chr9 32650044 32650091 -109621353 + MER44D DNA MER2_type 485 532 -1955 381 43 0 0 chr9 32650091 32650138 -109621306 + (CA)n Simple_repeat Simple_repeat 2 48 0 458 240 0 40 chr9 32650138 32650215 -109621229 + MER44D DNA MER2_type 532 604 -1 2009 270 26 64 chr9 32651399 32652091 -109619353 - L1M3e LINE L1 -6358 672 7 276 111 0 0 chr9 32652136 32652181 -109619263 + (TG)n Simple_repeat Simple_repeat 2 46 0 881 283 26 29 chr9 32652186 32652532 -109618912 - L1ME LINE L1 -492 6467 6123 457 264 62 0 chr9 32652585 32652763 -109618681 - L1ME LINE L1 -1310 5631 5443 954 301 96 25 chr9 32652975 32653219 -109618225 - MER90 LTR ERV1 -79 535 310 2050 169 88 8 chr9 32653219 32653615 -109617829 - MSTA LTR MaLR 0 428 1 954 301 96 25 chr9 32653615 32653858 -109617586 - MER90 LTR ERV1 -304 310 13 375 278 71 30 chr9 32653877 32654046 -109617398 - L1ME LINE L1 -4720 2221 2046 378 0 0 0 chr9 32654049 32654091 -109617353 + (TG)n Simple_repeat Simple_repeat 2 43 0 3172 171 13 20 chr9 32654100 32654698 -109616746 - L1PA16 LINE L1 -14 6152 5559 1375 182 0 0 chr9 32654698 32654934 -109616510 + L1PA16 LINE L1 5323 5558 -607 390 295 69 34 chr9 32654965 32655239 -109616205 - L1MDb LINE L1 -5036 1908 1544 435 333 92 11 chr9 32655246 32655615 -109615829 - L1MDb LINE L1 -4897 1526 1128 318 290 56 37 chr9 32656135 32656404 -109615040 - L1MDb LINE L1 -6131 292 19 21 0 0 0 chr9 32656585 32656606 -109614838 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 32656691 32656721 -109614723 + AT_rich Low_complexity Low_complexity 1 30 0 678 269 76 59 chr9 32657043 32657701 -109613743 - L1ME LINE L1 -4649 1914 1246 254 370 65 0 chr9 32657716 32657824 -109613620 - L2 LINE L2 -263 3050 2936 15522 189 29 24 chr9 32657845 32657997 -109613447 + L1M1 LINE L1 13 163 -7402 2331 95 0 6 chr9 32657997 32658312 -109613132 - AluSq SINE Alu 0 313 1 15522 189 29 24 chr9 32658312 32661210 -109610234 + L1M1 LINE L1 163 3077 -4488 3305 142 25 20 chr9 32661214 32661821 -109609623 + L1MA2 LINE L1 5695 6304 0 339 189 52 7 chr9 32662464 32662617 -109608827 + (TA)n Simple_repeat Simple_repeat 2 161 0 523 346 43 31 chr9 32663167 32663491 -109607953 - HERVL LTR ERVL -1124 4530 4203 431 305 119 31 chr9 32663526 32663960 -109607484 - L1ME LINE L1 -5018 1354 945 343 265 0 12 chr9 32664877 32664960 -109606484 + MLT1H LTR MaLR 146 227 -322 24 32 0 0 chr9 32665159 32665190 -109606254 + AT_rich Low_complexity Low_complexity 1 31 0 27 81 0 0 chr9 32665520 32665582 -109605862 + AT_rich Low_complexity Low_complexity 1 62 0 1307 224 6 74 chr9 32666085 32666437 -109605007 + MLT2D LTR ERVL 5 332 -82 21 71 0 0 chr9 32666602 32666644 -109604800 + AT_rich Low_complexity Low_complexity 1 42 0 34 0 0 0 chr9 32666725 32666759 -109604685 + AT_rich Low_complexity Low_complexity 1 34 0 2944 207 34 68 chr9 32668301 32668973 -109602471 - LTR1B LTR ERV1 0 826 188 2266 78 0 0 chr9 32668973 32669256 -109602188 - AluSc SINE Alu -26 283 1 2944 207 34 68 chr9 32669256 32669438 -109602006 - LTR1B LTR ERV1 -638 188 1 645 324 50 55 chr9 32669660 32670135 -109601309 + MLT1K LTR MaLR 104 576 -12 22 0 0 0 chr9 32670315 32670337 -109601107 + AT_rich Low_complexity Low_complexity 1 22 0 307 278 83 0 chr9 32671334 32671442 -109600002 + L2 LINE L2 3197 3313 0 4736 190 50 21 chr9 32673037 32674962 -109596482 - L1MA4A LINE L1 0 7365 5390 795 251 48 116 chr9 32674965 32675467 -109595977 - MER66A LTR ERV1 -10 468 1 3521 202 16 8 chr9 32675467 32676228 -109595216 - L1MA4A LINE L1 -1813 5395 4629 593 149 6 28 chr9 32676239 32676385 -109595059 + (TA)n Simple_repeat Simple_repeat 2 145 -33 2048 140 45 28 chr9 32676385 32676741 -109594703 + THE1B LTR MaLR 3 364 0 593 149 6 28 chr9 32676741 32676775 -109594669 + (TA)n Simple_repeat Simple_repeat 145 178 0 422 179 0 0 chr9 32676852 32676919 -109594525 - MER66B LTR ERV1 -10 476 410 306 0 0 0 chr9 32676952 32676986 -109594458 + (TA)n Simple_repeat Simple_repeat 1 34 0 323 161 0 12 chr9 32677100 32677181 -109594263 + (TA)n Simple_repeat Simple_repeat 2 81 0 6073 219 45 35 chr9 32677221 32680557 -109590887 - L1MA4A LINE L1 -2589 4619 689 245 290 161 0 chr9 32682476 32682569 -109588875 - L1ME LINE L1 -537 5584 5477 25 51 0 0 chr9 32682676 32682715 -109588729 + AT_rich Low_complexity Low_complexity 1 39 0 345 296 142 28 chr9 32683030 32683354 -109588090 - L1ME LINE L1 -1440 4706 4346 40 67 0 0 chr9 32683407 32683482 -109587962 + AT_rich Low_complexity Low_complexity 1 75 0 204 97 0 0 chr9 32685268 32685299 -109586145 + (CAT)n Simple_repeat Simple_repeat 3 33 0 759 152 22 60 chr9 32685648 32685832 -109585612 - L1MA8 LINE L1 -3 6288 6112 1076 206 12 16 chr9 32685841 32686088 -109585356 + L1 LINE L1 3663 3908 -2238 920 103 5 32 chr9 32687211 32687396 -109584048 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 0 0 0 chr9 32687407 32687432 -109584012 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 284 339 45 9 chr9 32688005 32688117 -109583327 - L2 LINE L2 -2 3311 3196 22 0 0 0 chr9 32688360 32688382 -109583062 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr9 32689266 32689295 -109582149 + (TA)n Simple_repeat Simple_repeat 2 30 0 260 295 95 0 chr9 32689435 32689530 -109581914 - MLT1I LTR MaLR -54 355 252 29 28 0 0 chr9 32690056 32690092 -109581352 + AT_rich Low_complexity Low_complexity 1 36 0 192 323 129 26 chr9 32690136 32690291 -109581153 - MIR SINE MIR -14 248 78 22 56 0 0 chr9 32690732 32690768 -109580676 + AT_rich Low_complexity Low_complexity 1 36 0 258 232 34 45 chr9 32691786 32691963 -109579481 + (TA)n Simple_repeat Simple_repeat 1 175 0 648 280 103 45 chr9 32692374 32692770 -109578674 - LTR52 LTR ERVL 0 421 3 352 164 0 0 chr9 32692772 32692833 -109578611 - LTR52-int LTR ERVL 0 3556 3496 976 210 25 22 chr9 32693105 32693365 -109578079 + MLT2B3 LTR ERVL 1 252 -201 6533 184 62 65 chr9 32693400 32695049 -109576395 - MER52A LTR ERV1 0 1755 1 1193 209 24 37 chr9 32695049 32695337 -109576107 + MLT2B3 LTR ERVL 266 549 -5 206 310 0 0 chr9 32695644 32695715 -109575729 + T-rich Low_complexity Low_complexity 1 71 0 1421 286 69 15 chr9 32695715 32696194 -109575250 - LTR52-int LTR ERVL -3050 506 2 793 248 92 50 chr9 32696202 32696605 -109574839 - LTR52 LTR ERVL 0 421 2 189 147 0 0 chr9 32696651 32696685 -109574759 + (CTA)n Simple_repeat Simple_repeat 2 35 0 285 316 66 26 chr9 32696715 32696867 -109574577 - MIR SINE MIR 0 262 105 309 240 177 0 chr9 32699195 32699291 -109572153 - L1ME LINE L1 -568 5598 5486 21 0 0 0 chr9 32699770 32699791 -109571653 + AT_rich Low_complexity Low_complexity 1 21 0 1747 203 44 5 chr9 32701114 32701498 -109569946 - L1P LINE L1 -1909 4237 3839 1137 213 66 41 chr9 32701489 32702055 -109569389 - L1 LINE L1 -3778 3787 3210 * 1073 153 86 10 chr9 32702060 32702269 -109569175 + MSTA LTR MaLR 1 225 -203 763 288 23 0 chr9 32702307 32702526 -109568918 - MER58A DNA MER1_type 0 224 1 183 186 0 0 chr9 32703801 32703844 -109567600 + (CA)n Simple_repeat Simple_repeat 1 43 0 27 62 0 0 chr9 32704190 32704238 -109567206 + AT_rich Low_complexity Low_complexity 1 48 0 276 259 82 52 chr9 32704466 32704601 -109566843 - L2 LINE L2 -237 3035 2897 2401 179 100 26 chr9 32704727 32705257 -109566187 + MER101B LTR ERV1 1 569 -1 447 323 82 32 chr9 32705335 32705614 -109565830 - LTR16C LTR ERVL -11 480 188 24 32 0 0 chr9 32705925 32705956 -109565488 + AT_rich Low_complexity Low_complexity 1 31 0 611 63 0 0 chr9 32706733 32706812 -109564632 + MADE1 DNA Mariner 1 79 -1 333 253 0 33 chr9 32708001 32708092 -109563352 - L2 LINE L2 -3 3269 3182 21 95 0 0 chr9 32708269 32708332 -109563112 + AT_rich Low_complexity Low_complexity 1 63 0 252 329 105 49 chr9 32708553 32708878 -109562566 - L1ME3A LINE L1 -234 5936 5594 238 189 54 72 chr9 32708934 32709045 -109562399 + L1M4 LINE L1 3878 3986 -2160 623 313 155 34 chr9 32710715 32711153 -109560291 - L2 LINE L2 0 3313 2823 4742 185 23 26 chr9 32712421 32713746 -109557698 + L1MA9 LINE L1 4457 5776 -515 1204 186 17 24 chr9 32713786 32714082 -109557362 + L1MA9 LINE L1 6019 6312 0 28 0 0 0 chr9 32714630 32714658 -109556786 + AT_rich Low_complexity Low_complexity 1 28 0 742 286 108 25 chr9 32714993 32715392 -109556052 - MLT1J1 LTR MaLR -14 432 1 22 56 0 0 chr9 32715611 32715647 -109555797 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr9 32715874 32715909 -109555535 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chr9 32716019 32716062 -109555382 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr9 32716373 32716401 -109555043 + AT_rich Low_complexity Low_complexity 1 28 0 2293 75 3 3 chr9 32716401 32716709 -109554735 - AluSx SINE Alu 0 312 5 956 265 133 88 chr9 32717547 32717793 -109553651 - MLT1E LTR MaLR -2 591 357 260 27 27 0 chr9 32717793 32717830 -109553614 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 956 265 133 88 chr9 32717830 32718149 -109553295 - MLT1E LTR MaLR -236 357 1 31 0 0 0 chr9 32718899 32718930 -109552514 + AT_rich Low_complexity Low_complexity 1 31 0 281 291 74 29 chr9 32719726 32719901 -109551543 - L1ME LINE L1 -341 5780 5598 576 126 0 21 chr9 32720305 32720400 -109551044 - L1MA3 LINE L1 -10 6295 6203 43122 46 2 1 chr9 32720710 32726863 -109544581 - L1PA3 LINE L1 0 6155 1 22 56 0 0 chr9 32728832 32728868 -109542576 + AT_rich Low_complexity Low_complexity 1 36 0 456 239 60 0 chr9 32728868 32729002 -109542442 - L1MA7 LINE L1 -3 6288 6147 1481 216 14 11 chr9 32729022 32729309 -109542135 + LTR57 LTR ERVL 82 369 -42 459 317 55 0 chr9 32729992 32730156 -109541288 + MIR SINE MIR 90 262 0 23 0 0 0 chr9 32730563 32730586 -109540858 + AT_rich Low_complexity Low_complexity 1 23 0 234 319 28 0 chr9 32731242 32731314 -109540130 + MIR SINE MIR 56 129 -133 26 30 0 0 chr9 32731636 32731669 -109539775 + AT_rich Low_complexity Low_complexity 1 33 0 306 331 59 35 chr9 32732676 32732845 -109538599 - MLT1I LTR MaLR -163 246 74 2617 181 7 44 chr9 32733600 32734168 -109537276 + MER44D DNA MER2_type 4 605 0 582 288 55 64 chr9 32734223 32735039 -109536405 - L1M4 LINE L1 -1901 4245 3437 197 65 32 0 chr9 32735039 32735070 -109536374 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 237 264 72 24 chr9 32736460 32736585 -109534859 - L1M4 LINE L1 -2690 3456 3326 573 236 51 19 chr9 32736715 32736872 -109534572 - L1ME1 LINE L1 -134 6032 5871 1652 238 35 42 chr9 32736977 32737495 -109533949 - L1ME1 LINE L1 -265 5901 5388 355 265 54 48 chr9 32737549 32737696 -109533748 + MLT1H LTR MaLR 3 150 -399 1575 329 137 18 chr9 32737734 32738781 -109532663 + L2 LINE L2 1876 3054 -259 217 274 151 0 chr9 32738899 32738972 -109532472 + L2 LINE L2 3230 3313 0 883 255 139 19 chr9 32741263 32741679 -109529765 - MER69 DNA AcHobo -26 2500 2035 309 291 71 0 chr9 32741699 32741826 -109529618 - MER69 DNA AcHobo -1958 568 433 5431 176 29 18 chr9 32742072 32743135 -109528309 + L1MC1 LINE L1 5255 6333 0 213 39 0 0 chr9 32743173 32743199 -109528245 + (TC)n Simple_repeat Simple_repeat 1 26 0 229 283 0 0 chr9 32743476 32743536 -109527908 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 189 411 11 0 chr9 32743855 32743945 -109527499 - L2 LINE L2 -2 3270 3180 233 196 36 0 chr9 32745168 32745224 -109526220 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1585 199 38 0 chr9 32745944 32746236 -109525208 + AluJo SINE Alu 2 304 -8 25 75 0 0 chr9 32746242 32746295 -109525149 + AT_rich Low_complexity Low_complexity 1 53 0 264 296 69 94 chr9 32746930 32747023 -109524421 + MIR SINE MIR 47 141 -121 3200 139 11 19 chr9 32747023 32747554 -109523890 + MER1A DNA MER1_type 1 527 0 264 296 69 94 chr9 32747554 32747663 -109523781 + MIR SINE MIR 141 244 -18 355 278 19 49 chr9 32748161 32748247 -109523197 - LTR43 LTR ERV1 -311 291 211 3823 131 18 5 chr9 32748247 32748848 -109522596 + MER4B LTR ERV1 2 610 0 355 278 19 49 chr9 32748848 32748923 -109522521 - LTR43 LTR ERV1 -391 211 135 286 346 171 26 chr9 32749216 32749707 -109521737 - L2 LINE L2 -1753 1561 1000 256 369 46 8 chr9 32753135 32753265 -109518179 + L2 LINE L2 3179 3313 0 29 47 0 0 chr9 32753347 32753390 -109518054 + AT_rich Low_complexity Low_complexity 1 43 0 1117 281 68 5 chr9 32753523 32753591 -109517853 - L1ME LINE L1 -379 5785 5723 1811 73 0 12 chr9 32753591 32753837 -109517607 + L1PA8 LINE L1 5924 6166 -6 1117 281 68 5 chr9 32753837 32754212 -109517232 - L1ME LINE L1 -441 5723 5314 383 315 66 69 chr9 32754423 32754728 -109516716 - L1MDa LINE L1 -4869 1671 1368 804 57 24 0 chr9 32754777 32754900 -109516544 + (TCTA)n Simple_repeat Simple_repeat 4 129 0 801 259 64 66 chr9 32754944 32755368 -109516076 - L1ME2 LINE L1 -141 6023 5601 1711 69 0 2 chr9 32755370 32755659 -109515785 + THE1A LTR MaLR 1 355 0 10804 109 29 5 chr9 32755659 32757196 -109514248 + THE1A-int LTR MaLR 1 1574 -6 2430 117 3 0 chr9 32757203 32757555 -109513889 + THE1A LTR MaLR 3 355 0 300 323 45 0 chr9 32757569 32757702 -109513742 - L1ME2 LINE L1 -574 5590 5452 180 0 0 0 chr9 32758503 32758523 -109512921 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 286 192 20 26 chr9 32758554 32758637 -109512807 - MLT1G LTR MaLR 0 590 464 218 81 27 0 chr9 32759388 32759425 -109512019 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 240 211 0 0 chr9 32759777 32759848 -109511596 + GA-rich Low_complexity Low_complexity 2 72 0 3937 210 45 18 chr9 32760722 32761561 -109509883 - MER21B LTR ERV1 -1 862 1 364 355 15 21 chr9 32761794 32761943 -109509501 + MIR3 SINE MIR 19 168 -40 1148 294 92 24 chr9 32762192 32763467 -109507977 + L1M4 LINE L1 2469 3830 -2316 4973 157 12 26 chr9 32763485 32764390 -109507054 + L1MA4 LINE L1 5351 6244 -56 2221 109 0 0 chr9 32764390 32764694 -109506750 + AluSq SINE Alu 1 304 -9 4973 157 12 26 chr9 32764694 32764751 -109506693 + L1MA4 LINE L1 6244 6300 0 247 307 43 49 chr9 32764816 32764979 -109506465 + L1M4 LINE L1 3986 4147 -1999 533 259 30 76 chr9 32765113 32765426 -109506018 + L1MC4 LINE L1 6500 6872 -1021 210 71 0 0 chr9 32766116 32766144 -109505300 + (TAA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr9 32766532 32766555 -109504889 + AT_rich Low_complexity Low_complexity 1 23 0 2258 101 13 0 chr9 32766645 32766953 -109504491 + AluSx SINE Alu 1 312 0 764 254 30 57 chr9 32769203 32769537 -109501907 - L1ME2 LINE L1 -1 6163 5839 6749 236 45 32 chr9 32769891 32770424 -109501020 - L1MC1 LINE L1 0 7144 6619 2350 49 0 0 chr9 32770424 32770734 -109500710 + AluY SINE Alu 1 310 0 6749 236 45 32 chr9 32770734 32773512 -109497932 - L1MC1 LINE L1 -525 6619 3690 1992 148 101 3 chr9 32773516 32773881 -109497563 - L1PA16 LINE L1 -22 6144 5744 325 150 30 158 chr9 32773863 32773917 -109497527 + L1P4 LINE L1 5632 5661 -505 * 1565 187 17 23 chr9 32773917 32774217 -109497227 + AluJb SINE Alu 2 299 -13 325 150 30 158 chr9 32774217 32774295 -109497149 + L1P4 LINE L1 5661 5747 -419 * 1615 272 51 23 chr9 32774288 32775069 -109496375 - L1MC1 LINE L1 -3254 3703 2939 358 286 71 8 chr9 32775549 32775667 -109495777 - MLT1J LTR MaLR -287 198 42 22 0 0 0 chr9 32776157 32776179 -109495265 + AT_rich Low_complexity Low_complexity 1 22 0 1402 246 62 74 chr9 32776486 32777349 -109494095 - L1MC1 LINE L1 -4767 2192 1343 223 146 100 0 chr9 32777372 32777482 -109493962 + (TA)n Simple_repeat Simple_repeat 1 121 0 341 253 100 53 chr9 32777485 32777635 -109493809 - L1MC1 LINE L1 -5499 1360 1204 1452 330 62 17 chr9 32778220 32778801 -109492643 - L1MC1 LINE L1 -5980 879 273 1321 237 30 25 chr9 32778804 32779171 -109492273 - MLT1A2 LTR MaLR 0 374 6 1940 230 38 2 chr9 32779176 32779594 -109491850 - MLT1A2-int LTR MaLR 0 1735 1303 235 224 0 92 chr9 32779595 32779671 -109491773 + MLT-int LTR MaLR 943 1011 -724 27 0 0 0 chr9 32780844 32780871 -109490573 + AT_rich Low_complexity Low_complexity 1 27 0 2345 60 0 0 chr9 32780915 32781234 -109490210 - AluY SINE Alu 0 319 1 229 250 50 0 chr9 32781422 32781482 -109489962 + MLT1J1 LTR MaLR 269 331 -115 557 320 73 43 chr9 32781844 32782404 -109489040 + L1M4 LINE L1 57 633 -5909 1771 351 79 23 chr9 32782908 32784056 -109487388 + L2 LINE L2 1790 2998 -315 257 385 0 56 chr9 32784095 32784290 -109487154 + MER5A DNA MER1_type 6 189 0 23 33 0 0 chr9 32784506 32784536 -109486908 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr9 32786356 32786386 -109485058 + AT_rich Low_complexity Low_complexity 1 30 0 2123 139 12 14 chr9 32786510 32786854 -109484590 + MER61A LTR ERV1 1 343 0 2710 189 74 104 chr9 32786854 32787655 -109483789 + MER61A-int LTR ERV1 1 777 -4440 * 3219 111 18 14 chr9 32787648 32788197 -109483247 + MER61A-int LTR ERV1 1320 1917 -3300 * 16559 101 10 13 chr9 32788193 32790894 -109480550 + MER61A-int LTR ERV1 2477 5215 -2 2106 142 30 0 chr9 32790898 32791229 -109480215 + MER61A LTR ERV1 3 343 0 7578 25 3 0 chr9 32792325 32793459 -109477985 - L1PA5 LINE L1 -6 6148 5012 3066 40 3 0 chr9 32793459 32793831 -109477613 + L1P LINE L1 3867 4239 -1907 399 303 32 32 chr9 32793838 32793993 -109477451 - MIR SINE MIR -74 188 34 203 414 19 19 chr9 32795887 32796044 -109475400 + L2 LINE L2 2896 3052 -261 433 124 11 11 chr9 32796230 32796319 -109475125 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 2366 53 40 7 chr9 32797688 32797989 -109473455 + AluY SINE Alu 1 311 0 414 259 144 0 chr9 32798732 32798871 -109472573 + MER46C DNA MER2_type 179 337 -1 338 308 77 65 chr9 32799407 32799514 -109471930 - L1MEd LINE L1 -5096 1023 919 2171 115 16 0 chr9 32799514 32799819 -109471625 - AluSq SINE Alu -3 310 1 338 308 77 65 chr9 32799819 32800049 -109471395 - L1MEd LINE L1 -5200 919 682 1983 140 0 3 chr9 32800711 32801004 -109470440 + AluSx SINE Alu 3 294 -18 25 31 0 0 chr9 32801791 32801823 -109469621 + AT_rich Low_complexity Low_complexity 1 32 0 2285 177 14 23 chr9 32802379 32802814 -109468630 + Tigger2a DNA MER2_type 1 431 -3 1504 153 102 28 chr9 32803007 32803366 -109468078 - Tigger3(Golem) DNA MER2_type 0 3029 1 26 0 0 0 chr9 32803463 32803489 -109467955 + AT_rich Low_complexity Low_complexity 1 26 0 398 329 81 6 chr9 32803657 32803818 -109467626 + LTR33 LTR ERVL 10 182 -339 314 334 89 44 chr9 32804309 32804647 -109466797 + L2 LINE L2 2346 2698 -616 1941 80 98 4 chr9 32807187 32807462 -109463982 + AluSq SINE Alu 1 301 -12 1059 296 101 52 chr9 32807935 32808672 -109462772 - L1M4 LINE L1 -1836 4310 3611 2386 46 0 0 chr9 32808672 32808983 -109462461 + AluY SINE Alu 1 311 0 1059 296 101 52 chr9 32808983 32809813 -109461631 - L1M4 LINE L1 -2535 3611 2665 284 333 0 0 chr9 32809832 32809946 -109461498 - L1M4 LINE L1 -3551 2595 2482 880 315 50 0 chr9 32809950 32810229 -109461215 - LTR16A LTR ERVL 0 450 158 538 300 82 25 chr9 32810343 32810696 -109460748 - L1M4 LINE L1 -3661 2485 2113 36 87 0 0 chr9 32810828 32810920 -109460524 + AT_rich Low_complexity Low_complexity 1 92 0 273 143 0 0 chr9 32811358 32811407 -109460037 - L1PA10 LINE L1 -1100 5046 4998 6382 91 17 0 chr9 32811408 32812514 -109458930 + L1PA10 LINE L1 5048 6168 0 22 0 0 0 chr9 32812585 32812607 -109458837 + AT_rich Low_complexity Low_complexity 1 22 0 1836 179 60 45 chr9 32812615 32813100 -109458344 + LTR22B LTR ERVK 1 492 0 14608 216 31 18 chr9 32813245 32815441 -109456003 - L1PA15 LINE L1 -3 6813 4647 2131 97 10 13 chr9 32815441 32815750 -109455694 - AluSc SINE Alu -1 308 1 14608 216 31 18 chr9 32815750 32816021 -109455423 - L1PA15 LINE L1 -2169 4647 4381 423 0 0 0 chr9 32816021 32816068 -109455376 + (TG)n Simple_repeat Simple_repeat 2 48 0 14608 216 31 18 chr9 32816068 32819147 -109452297 - L1PA15 LINE L1 -2435 4381 1189 28 0 0 0 chr9 32819695 32819723 -109451721 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr9 32819900 32819944 -109451500 + AT_rich Low_complexity Low_complexity 1 44 0 356 321 87 46 chr9 32820062 32820365 -109451079 + L1ME LINE L1 5257 5574 -590 1014 101 0 0 chr9 32820459 32820598 -109450846 - AluSg/x SINE Alu 0 312 174 1757 153 0 0 chr9 32820598 32820860 -109450584 - AluSx SINE Alu -48 264 3 303 304 46 0 chr9 32820863 32820989 -109450455 + L1ME LINE L1 5701 5831 -347 636 206 71 0 chr9 32821056 32821182 -109450262 - Tigger2 DNA MER2_type -11 2707 2573 63 57 0 0 chr9 32821182 32821287 -109450157 + AT_rich Low_complexity Low_complexity 1 105 0 1157 189 97 23 chr9 32821318 32821577 -109449867 - Tigger2 DNA MER2_type -150 2568 2291 273 213 0 93 chr9 32821580 32821655 -109449789 - Tigger2 DNA MER2_type -2650 68 1 180 0 0 0 chr9 32823542 32823562 -109447882 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 351 60 0 0 chr9 32823907 32823957 -109447487 + (CA)n Simple_repeat Simple_repeat 2 51 0 502 330 76 39 chr9 32823957 32824440 -109447004 - HERV16 LTR ERVL -1462 3570 3142 452 305 8 8 chr9 32824693 32824821 -109446623 - HERV16 LTR ERVL -3195 1801 1674 296 179 0 0 chr9 32824824 32824891 -109446553 - L1PA16 LINE L1 -1 6165 6099 637 336 47 45 chr9 32824972 32825528 -109445916 - HERV16 LTR ERVL -3502 1494 938 291 398 31 0 chr9 32825738 32825934 -109445510 - HERV16 LTR ERVL -4332 664 463 681 267 30 72 chr9 32826914 32827277 -109444167 - MLT1C LTR MaLR -114 353 6 440 318 4 64 chr9 32827338 32827571 -109443873 - L1ME LINE L1 -5842 228 10 199 297 27 0 chr9 32827638 32827712 -109443732 + MER5A DNA MER1_type 37 112 -77 230 180 16 0 chr9 32828081 32828142 -109443302 + (TTA)n Simple_repeat Simple_repeat 3 64 0 529 86 21 0 chr9 32828879 32828972 -109442472 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 388 256 17 61 chr9 32829585 32829765 -109441679 + L1MC5 LINE L1 7730 7901 -60 201 342 18 18 chr9 32829841 32829955 -109441489 + L2 LINE L2 2458 2571 -743 225 85 34 34 chr9 32830149 32830208 -109441236 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 357 93 0 0 chr9 32830266 32830320 -109441124 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 269 155 17 0 chr9 32830363 32830421 -109441023 + (TA)n Simple_repeat Simple_repeat 2 60 0 583 350 78 69 chr9 32830540 32831412 -109440032 + L2 LINE L2 2375 3269 -44 1277 203 11 36 chr9 32831416 32831697 -109439747 + AluJo SINE Alu 21 294 -18 59 38 0 0 chr9 32831862 32831942 -109439502 + AT_rich Low_complexity Low_complexity 1 80 0 513 215 0 0 chr9 32831942 32832176 -109439268 + (TA)n Simple_repeat Simple_repeat 1 234 0 361 147 16 54 chr9 32832477 32832661 -109438783 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 268 260 158 0 chr9 32832878 32833005 -109438439 + LTR37A LTR ERV1 81 227 -199 542 273 53 0 chr9 32833042 32833229 -109438215 + LTR37A LTR ERV1 225 421 -5 1801 222 126 54 chr9 32833511 32834196 -109437248 + MER50 LTR ERV1 1 734 0 1686 176 3 0 chr9 32834755 32835059 -109436385 - AluJb SINE Alu 0 307 3 864 237 73 40 chr9 32835503 32835777 -109435667 - MLT1D LTR MaLR -7 498 216 438 198 25 0 chr9 32835791 32835888 -109435556 - MLT1D LTR MaLR -398 107 5 22 70 0 0 chr9 32836055 32836098 -109435346 + AT_rich Low_complexity Low_complexity 1 43 0 871 212 64 134 chr9 32836705 32837112 -109434332 - MLT1C LTR MaLR -4 448 11 23 0 0 0 chr9 32837296 32837319 -109434125 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 32837587 32837612 -109433832 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 32838795 32838818 -109432626 + AT_rich Low_complexity Low_complexity 1 23 0 1960 171 16 60 chr9 32838925 32838965 -109432479 - MLT2D LTR ERVL 0 414 374 303 28 0 0 chr9 32838965 32839001 -109432443 + (TG)n Simple_repeat Simple_repeat 1 36 0 1960 171 16 60 chr9 32839001 32839393 -109432051 - MLT2D LTR ERVL -40 374 1 1842 253 23 7 chr9 32839549 32839992 -109431452 - MER82 DNA MER2_type -8 645 196 198 103 0 0 chr9 32840017 32840046 -109431398 + (CA)n Simple_repeat Simple_repeat 1 29 0 1122 203 0 0 chr9 32840046 32840243 -109431201 - MER82 DNA MER2_type -450 203 7 641 304 121 48 chr9 32841024 32841521 -109429923 - MLT1H LTR MaLR 0 549 17 220 255 0 0 chr9 32843029 32843080 -109428364 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 24 0 0 0 chr9 32843574 32843598 -109427846 + AT_rich Low_complexity Low_complexity 1 24 0 3645 159 12 37 chr9 32844066 32845381 -109426063 - L1MA4 LINE L1 -311 5989 4704 1026 244 93 4 chr9 32845595 32845841 -109425603 - MLT1A1 LTR MaLR -95 270 3 1094 244 80 14 chr9 32846100 32846387 -109425057 + MLT1A1 LTR MaLR 57 362 -3 2986 95 18 14 chr9 32847553 32847995 -109423449 - MLT2A1 LTR ERVL 0 444 1 700 230 17 91 chr9 32848540 32848770 -109422674 - MER20 DNA MER1_type 0 219 7 230 260 0 0 chr9 32849331 32849381 -109422063 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 200 111 0 28 chr9 32849796 32849832 -109421612 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 401 239 120 85 chr9 32849993 32850252 -109421192 + L1MC4 LINE L1 7739 8006 -36 1039 203 4 22 chr9 32850257 32850484 -109420960 - AluJo SINE Alu -6 306 84 3442 198 66 42 chr9 32850524 32851402 -109420042 + L1MB3 LINE L1 5285 6183 0 814 195 115 102 chr9 32851685 32852069 -109419375 + MLT1C LTR MaLR 1 389 -1 491 133 0 0 chr9 32852331 32852406 -109419038 + MADE1 DNA Mariner 1 75 -5 213 39 0 0 chr9 32852908 32852934 -109418510 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 346 347 62 14 chr9 32855678 32855822 -109415622 + MIR3 SINE MIR 45 195 -13 397 288 31 56 chr9 32856858 32857018 -109414426 - MIR SINE MIR -28 234 79 21 0 0 0 chr9 32857090 32857111 -109414333 + AT_rich Low_complexity Low_complexity 1 21 0 236 250 28 14 chr9 32857206 32857278 -109414166 + (TATG)n Simple_repeat Simple_repeat 2 74 0 244 363 0 52 chr9 32858071 32858206 -109413238 - MIR SINE MIR -129 133 6 23 0 0 0 chr9 32858922 32858945 -109412499 + AT_rich Low_complexity Low_complexity 1 23 0 2197 132 92 2 chr9 32860528 32860921 -109410523 - MSTA LTR MaLR 0 428 1 2020 204 52 2 chr9 32861062 32861468 -109409976 - MSTB LTR MaLR 0 426 1 348 325 83 40 chr9 32861571 32861873 -109409571 + L1MC4 LINE L1 7722 8036 -6 346 286 118 16 chr9 32861888 32862133 -109409311 + L1MC5 LINE L1 7508 7777 -184 256 333 0 0 chr9 32862443 32862518 -109408926 - MIR SINE MIR -127 135 61 295 368 46 62 chr9 32862521 32862828 -109408616 - MLT1I LTR MaLR -107 302 1 21 0 0 0 chr9 32863110 32863131 -109408313 + AT_rich Low_complexity Low_complexity 1 21 0 236 299 30 15 chr9 32863538 32863605 -109407839 - L2 LINE L2 -19 3253 3186 33 32 0 32 chr9 32864720 32864753 -109406691 + AT_rich Low_complexity Low_complexity 1 33 -27 2048 130 7 0 chr9 32864753 32865046 -109406398 + AluSx SINE Alu 1 295 -17 33 32 0 32 chr9 32865046 32865074 -109406370 + AT_rich Low_complexity Low_complexity 33 60 0 1522 213 52 56 chr9 32865360 32865387 -109406057 + MLT1C LTR MaLR 1 27 -440 261 0 0 0 chr9 32865387 32865416 -109406028 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1522 213 52 56 chr9 32865416 32865480 -109405964 + MLT1C LTR MaLR 27 90 -377 1596 221 34 0 chr9 32865480 32865833 -109405611 - MLT1A1 LTR MaLR 0 365 1 1522 213 52 56 chr9 32865833 32866205 -109405239 + MLT1C LTR MaLR 90 463 -4 31 26 0 0 chr9 32866644 32866682 -109404762 + AT_rich Low_complexity Low_complexity 1 38 0 31 92 0 0 chr9 32867085 32867172 -109404272 + AT_rich Low_complexity Low_complexity 1 87 0 24 0 0 0 chr9 32867515 32867539 -109403905 + AT_rich Low_complexity Low_complexity 1 24 0 1397 226 34 0 chr9 32867667 32867964 -109403480 + AluJb SINE Alu 1 307 -5 252 59 0 0 chr9 32867967 32868001 -109403443 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 311 265 114 30 chr9 32868289 32868421 -109403023 + MLT1K LTR MaLR 165 307 -281 262 282 0 24 chr9 32869683 32869768 -109401676 + Charlie7 DNA MER1_type 23 105 -2507 3125 158 68 10 chr9 32870335 32870925 -109400519 + L1PA16 LINE L1 5543 6166 0 398 396 7 0 chr9 32871663 32871802 -109399642 + L2 LINE L2 3123 3262 -10 470 339 113 17 chr9 32874862 32875101 -109396343 - L2 LINE L2 -537 2777 2516 305 273 0 50 chr9 32875615 32875704 -109395740 + L1MC4 LINE L1 6614 6699 -1343 189 0 0 0 chr9 32875704 32875725 -109395719 + (CA)n Simple_repeat Simple_repeat 2 22 0 6174 150 65 9 chr9 32875853 32877016 -109394428 - Tigger3b DNA MER2_type -2 1229 1 24 0 0 0 chr9 32877132 32877156 -109394288 + AT_rich Low_complexity Low_complexity 1 24 0 5741 108 35 1 chr9 32877156 32878823 -109392621 + L1PA11 LINE L1 4462 6166 -8 6273 174 119 93 chr9 32878948 32880641 -109390803 + MER52A LTR ERV1 2 1739 -16 186 103 0 0 chr9 32880737 32880766 -109390678 + (TA)n Simple_repeat Simple_repeat 1 29 0 337 270 72 7 chr9 32880779 32880931 -109390513 - L1MEc LINE L1 -2471 3744 3583 406 228 49 0 chr9 32880951 32881113 -109390331 + (TA)n Simple_repeat Simple_repeat 1 170 0 1168 265 58 51 chr9 32881152 32881982 -109389462 - L1MEc LINE L1 -2673 3542 2707 1598 295 61 7 chr9 32882012 32882914 -109388530 - L1MEc LINE L1 -3705 2510 1587 843 276 70 47 chr9 32882923 32883368 -109388076 + MLT1C LTR MaLR 9 463 -4 2700 276 72 55 chr9 32883410 32884930 -109386514 - L1MEc LINE L1 -4815 1581 37 891 192 129 17 chr9 32885326 32885613 -109385831 + MER33 DNA MER1_type 6 324 0 481 251 153 16 chr9 32885645 32885828 -109385616 - MER58A DNA MER1_type -15 209 2 365 333 69 0 chr9 32885875 32886034 -109385410 + MLT1J LTR MaLR 336 505 -6 192 97 0 0 chr9 32886621 32886652 -109384792 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7534 25 0 0 chr9 32886652 32887780 -109383664 - L1PA3 LINE L1 -6 6149 5016 204 232 84 74 chr9 32888084 32888179 -109383265 - MIR SINE MIR -68 194 99 22 0 0 0 chr9 32889103 32889125 -109382319 + AT_rich Low_complexity Low_complexity 1 22 0 369 245 0 0 chr9 32889281 32889383 -109382061 + (TA)n Simple_repeat Simple_repeat 2 103 0 26 30 0 0 chr9 32889575 32889608 -109381836 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 32890739 32890760 -109380684 + AT_rich Low_complexity Low_complexity 1 21 0 1007 245 60 10 chr9 32890774 32891072 -109380372 + L1MCa LINE L1 1288 1600 -4826 1518 211 63 16 chr9 32891187 32891363 -109380081 + MLT1B LTR MaLR 1 167 -223 261 0 0 0 chr9 32891363 32891392 -109380052 + (TC)n Simple_repeat Simple_repeat 2 30 0 1518 211 63 16 chr9 32891392 32891580 -109379864 + MLT1B LTR MaLR 167 382 -8 7581 25 2 0 chr9 32891603 32893045 -109378399 + L1PA3 LINE L1 4709 6152 -3 277 49 0 49 chr9 32893107 32893148 -109378296 + THE1C LTR MaLR 1 39 -336 206 62 31 0 chr9 32893148 32893180 -109378264 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 250 103 11 69 chr9 32893186 32893273 -109378171 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 12897 212 97 14 chr9 32893292 32898401 -109373043 - L1PBa LINE L1 -1113 5749 60 3794 150 79 15 chr9 32898369 32899029 -109372415 - THE1-int LTR MaLR -623 957 256 * 3083 230 88 19 chr9 32899554 32900290 -109371154 + L1MD2 LINE L1 5352 6036 -1749 243 0 0 0 chr9 32900290 32900317 -109371127 + (CA)n Simple_repeat Simple_repeat 2 28 0 3083 230 88 19 chr9 32900317 32900487 -109370957 + L1MD2 LINE L1 6036 7747 -38 28 116 0 0 chr9 32900797 32900944 -109370500 + AT_rich Low_complexity Low_complexity 1 147 0 188 268 0 0 chr9 32901031 32901072 -109370372 + L2 LINE L2 3189 3229 -84 24 77 0 0 chr9 32901784 32901836 -109369608 + AT_rich Low_complexity Low_complexity 1 52 0 1112 246 56 34 chr9 32902385 32902742 -109368702 + MLT1A1 LTR MaLR 1 365 0 2790 269 91 26 chr9 32902744 32903906 -109367538 + L1MEc LINE L1 34 1271 -5125 22 80 0 0 chr9 32904884 32904934 -109366510 + AT_rich Low_complexity Low_complexity 1 50 0 408 40 0 0 chr9 32905088 32905138 -109366306 + (CA)n Simple_repeat Simple_repeat 1 50 0 231 346 31 8 chr9 32905216 32905343 -109366101 - L1ME LINE L1 -297 5824 5695 230 320 97 0 chr9 32905675 32905778 -109365666 + L2 LINE L2 3181 3293 -20 353 325 43 24 chr9 32906873 32907059 -109364385 + MIR SINE MIR 50 236 -26 22 0 0 0 chr9 32907733 32907755 -109363689 + AT_rich Low_complexity Low_complexity 1 22 0 1499 186 54 0 chr9 32907757 32908036 -109363408 + AluJb SINE Alu 1 294 -18 288 177 44 51 chr9 32908214 32908372 -109363072 + (TTTA)n Simple_repeat Simple_repeat 3 159 0 1297 270 41 24 chr9 32908688 32909263 -109362181 - MER76 LTR ERV 0 688 47 21 36 0 0 chr9 32910584 32910612 -109360832 + AT_rich Low_complexity Low_complexity 1 28 0 277 364 17 0 chr9 32910787 32910960 -109360484 - L1MD3 LINE L1 -12 7983 7808 22 0 0 0 chr9 32910972 32910994 -109360450 + AT_rich Low_complexity Low_complexity 1 22 0 499 218 58 89 chr9 32911084 32912047 -109359397 - L1MD2 LINE L1 -165 6077 5189 1910 152 53 31 chr9 32912646 32913002 -109358442 + THE1B LTR MaLR 1 364 0 10699 107 29 1 chr9 32913002 32914539 -109356905 + THE1B-int LTR MaLR 1 1580 0 1719 182 106 0 chr9 32914539 32914868 -109356576 + THE1B LTR MaLR 1 364 0 206 132 38 19 chr9 32915308 32915361 -109356083 + (TTTAA)n Simple_repeat Simple_repeat 5 58 0 21 0 0 0 chr9 32915789 32915810 -109355634 + AT_rich Low_complexity Low_complexity 1 21 0 1210 198 14 0 chr9 32915974 32916191 -109355253 + L1PA14 LINE L1 1 220 -7361 1135 94 65 6 chr9 32916203 32916373 -109355071 + L1PA12 LINE L1 1964 2143 -5438 14235 181 13 14 chr9 32916373 32918098 -109353346 + L1PA14 LINE L1 215 1939 -5645 1568 189 73 14 chr9 32918098 32918452 -109352992 - THE1C LTR MaLR 0 375 1 14235 181 13 14 chr9 32918452 32920213 -109351231 + L1PA14 LINE L1 1939 3979 -3605 5859 116 7 2 chr9 32920213 32921632 -109349812 + L1PA14 LINE L1 6167 7599 0 2085 131 0 19 chr9 32921851 32922165 -109349279 + AluSx SINE Alu 1 308 -4 1960 117 17 8 chr9 32923855 32924306 -109347138 - L1PA12 LINE L1 -604 5564 5109 3578 122 35 0 chr9 32924306 32924859 -109346585 + L1PA12 LINE L1 5579 6164 -4 25 65 0 0 chr9 32926441 32926487 -109344957 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 32927824 32927845 -109343599 + AT_rich Low_complexity Low_complexity 1 21 0 439 305 18 66 chr9 32927958 32928101 -109343343 + MIR SINE MIR 4 152 -110 1546 191 0 38 chr9 32928101 32928270 -109343174 - AluJo SINE Alu -4 308 134 230 0 33 0 chr9 32928270 32928300 -109343144 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2302 85 0 3 chr9 32928300 32928583 -109342861 - AluSq SINE Alu -29 284 3 1546 191 0 38 chr9 32928583 32928731 -109342713 - AluJo SINE Alu -176 136 2 439 305 18 66 chr9 32928731 32928859 -109342585 + MIR SINE MIR 152 262 0 2690 206 55 26 chr9 32929382 32930581 -109340863 + L1M2 LINE L1 4295 5598 -714 38 39 0 0 chr9 32930871 32930923 -109340521 + AT_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr9 32931846 32931878 -109339566 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 32932744 32932765 -109338679 + AT_rich Low_complexity Low_complexity 1 21 0 271 296 57 0 chr9 32932923 32933011 -109338433 - MIR SINE MIR -76 186 94 1806 216 7 39 chr9 32933012 32933451 -109337993 - L1MA10 LINE L1 -39 6295 5871 * 2539 195 12 51 chr9 32933450 32934358 -109337086 + L1MB1 LINE L1 4960 5836 -332 19991 54 1 12 chr9 32934363 32937756 -109333688 - L1PA4 LINE L1 0 6155 2786 8067 86 31 0 chr9 32937772 32938857 -109332587 - L1PA4 LINE L1 -5015 1131 13 2866 221 51 34 chr9 32938942 32939712 -109331732 - L1MD1 LINE L1 0 6242 5460 28515 134 13 57 chr9 32939874 32945359 -109326085 + L1PA8 LINE L1 1 5146 -1026 219 36 0 0 chr9 32945359 32945387 -109326057 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28515 134 13 57 chr9 32945387 32946362 -109325082 + L1PA8 LINE L1 5146 6163 -9 2924 242 11 14 chr9 32946713 32947514 -109323930 + L1 LINE L1 4314 5112 -1034 1402 164 128 2 chr9 32947523 32947896 -109323548 - L1PB1 LINE L1 -700 5603 5187 2981 92 23 138 chr9 32947897 32948061 -109323383 + L1PB1 LINE L1 5611 5792 -359 324 0 0 0 chr9 32948061 32948097 -109323347 + (CA)n Simple_repeat Simple_repeat 2 37 0 497 75 21 21 chr9 32948098 32948192 -109323252 + (TA)n Simple_repeat Simple_repeat 1 94 0 2981 92 23 138 chr9 32948192 32948635 -109322809 + L1PB1 LINE L1 5791 6150 -1 2793 200 10 2 chr9 32948671 32949349 -109322095 + L1PA16 LINE L1 5106 5787 -379 9066 190 17 19 chr9 32949350 32952258 -109319186 + L1PB3 LINE L1 3261 6154 0 1922 202 18 0 chr9 32952267 32952648 -109318796 + L1PA16 LINE L1 5779 6166 0 27 49 0 0 chr9 32953152 32953193 -109318251 + AT_rich Low_complexity Low_complexity 1 41 0 1552 186 4 18 chr9 32954264 32954543 -109316901 + AluJb SINE Alu 1 275 -37 294 206 0 0 chr9 32954548 32954611 -109316833 + G-rich Low_complexity Low_complexity 5 67 0 722 354 116 42 chr9 32954612 32955127 -109316317 - L2 LINE L2 -410 2904 2428 1516 142 36 47 chr9 32955127 32955401 -109316043 + AluSx SINE Alu 3 273 -39 722 354 116 42 chr9 32955401 32956009 -109315435 - L2 LINE L2 -886 2428 1698 299 286 103 8 chr9 32956655 32956781 -109314663 - MIR SINE MIR -122 140 3 385 391 103 26 chr9 32956856 32957470 -109313974 - L2 LINE L2 -2341 973 313 189 0 0 0 chr9 32958608 32958629 -109312815 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1612 172 0 0 chr9 32958640 32958907 -109312537 - AluSx SINE Alu -45 267 1 248 343 0 0 chr9 32961007 32961080 -109310364 + MIR SINE MIR 82 154 -108 180 200 0 0 chr9 32961269 32961309 -109310135 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 1674 163 0 42 chr9 32961337 32961463 -109309981 + AluJb SINE Alu 17 147 -165 2506 64 0 0 chr9 32961463 32961774 -109309670 + AluY SINE Alu 1 311 0 1674 163 0 42 chr9 32961774 32961954 -109309490 + AluJb SINE Alu 147 310 -2 2133 109 0 20 chr9 32963442 32963797 -109307647 - AluSx SINE Alu 0 349 1 2426 51 6 10 chr9 32964219 32964555 -109306889 + AluY SINE Alu 1 335 0 307 333 16 0 chr9 32965511 32965634 -109305810 + MIR3 SINE MIR 74 198 -10 2257 88 0 0 chr9 32967016 32967313 -109304131 - AluY SINE Alu -14 297 1 225 0 0 0 chr9 32967468 32967493 -109303951 + (A)n Simple_repeat Simple_repeat 1 25 0 141 53 0 0 chr9 32968480 32968705 -109302739 + AT_rich Low_complexity Low_complexity 1 225 0 21 36 0 0 chr9 32968945 32968973 -109302471 + AT_rich Low_complexity Low_complexity 1 28 0 1029 103 13 0 chr9 32970525 32970681 -109300763 + L1PA10 LINE L1 5995 6152 -16 25 31 0 0 chr9 32970685 32970717 -109300727 + AT_rich Low_complexity Low_complexity 1 32 0 2261 95 0 7 chr9 32970899 32971204 -109300240 - AluY SINE Alu -8 303 1 216 0 0 0 chr9 32971692 32971716 -109299728 + (CA)n Simple_repeat Simple_repeat 2 25 0 1540 189 0 21 chr9 32971860 32972141 -109299303 + AluJb SINE Alu 6 280 -32 234 0 0 0 chr9 32972141 32972167 -109299277 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 215 194 16 16 chr9 32972322 32972384 -109299060 + (TA)n Simple_repeat Simple_repeat 2 63 0 216 277 15 0 chr9 32973923 32973988 -109297456 - MIR SINE MIR -59 203 138 855 155 0 27 chr9 32974073 32974221 -109297223 + AluJo SINE Alu 9 152 -160 273 119 0 0 chr9 32974240 32974282 -109297162 + (A)n Simple_repeat Simple_repeat 1 42 0 225 178 0 0 chr9 32974906 32974951 -109296493 + LTR66 LTR ERVL 394 438 -172 345 186 10 21 chr9 32974987 32975084 -109296360 + (TA)n Simple_repeat Simple_repeat 1 96 0 209 285 16 98 chr9 32976179 32976302 -109295142 - MIR SINE MIR -12 250 138 200 246 15 46 chr9 32976339 32976404 -109295040 + L2 LINE L2 2556 2618 -696 548 295 57 9 chr9 32976847 32977057 -109294387 - L2 LINE L2 0 3313 3094 21 0 0 0 chr9 32977313 32977334 -109294110 + AT_rich Low_complexity Low_complexity 1 21 0 203 297 31 0 chr9 32977398 32977462 -109293982 + L2 LINE L2 3207 3272 0 529 287 33 15 chr9 32977785 32978053 -109293391 + L1MCa LINE L1 1662 1982 -4444 22 35 0 0 chr9 32978198 32978227 -109293217 + AT_rich Low_complexity Low_complexity 1 29 0 257 105 0 0 chr9 32978394 32978432 -109293012 + tRNA-Leu-TTG tRNA tRNA 1 38 -48 238 171 13 13 chr9 32979497 32979573 -109291871 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 35 0 0 chr9 32979788 32979817 -109291627 + AT_rich Low_complexity Low_complexity 1 29 0 390 239 11 0 chr9 32980120 32980212 -109291232 - MER94 DNA DNA -41 93 1 288 0 0 0 chr9 32980338 32980370 -109291074 + (TG)n Simple_repeat Simple_repeat 2 33 0 29 60 0 0 chr9 32980540 32980590 -109290854 + AT_rich Low_complexity Low_complexity 1 50 0 216 293 0 127 chr9 32981511 32981668 -109289776 - MIR SINE MIR -77 185 49 335 184 32 165 chr9 32982142 32982300 -109289144 + MER20 DNA MER1_type 1 137 -82 1830 151 10 13 chr9 32982708 32983013 -109288431 + AluSx SINE Alu 1 304 -8 201 121 0 0 chr9 32983533 32983566 -109287878 + (A)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr9 32983959 32983987 -109287457 + AT_rich Low_complexity Low_complexity 1 28 0 6825 202 22 13 chr9 32984910 32986481 -109284963 - L1PB1 LINE L1 -1591 4555 2971 3401 164 33 6 chr9 32986482 32987657 -109283787 + L1PB1 LINE L1 4585 5791 -360 237 156 47 0 chr9 32987676 32987740 -109283704 - L1MC4 LINE L1 -1339 6703 6637 273 221 0 0 chr9 32987742 32987810 -109283634 + (TA)n Simple_repeat Simple_repeat 2 69 0 2157 136 14 8 chr9 32987813 32988173 -109283271 + L1PB1 LINE L1 5787 6148 -3 1772 180 0 20 chr9 32988209 32988338 -109283106 + AluSx SINE Alu 1 131 -181 181 0 33 33 chr9 32988338 32988368 -109283076 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1772 180 0 20 chr9 32988368 32988544 -109282900 + AluSx SINE Alu 131 300 -12 207 100 0 0 chr9 32988544 32988574 -109282870 + (GA)n Simple_repeat Simple_repeat 1 30 0 297 244 173 12 chr9 32988595 32988763 -109282681 - L1MC4 LINE L1 -2287 5521 5327 21 0 0 0 chr9 32988995 32989016 -109282428 + AT_rich Low_complexity Low_complexity 1 21 0 320 324 9 18 chr9 32989220 32989331 -109282113 + MIR SINE MIR 36 145 -63 206 279 238 7 chr9 32989501 32989648 -109281796 + MIR SINE MIR 72 252 -10 639 182 25 0 chr9 32989703 32989862 -109281582 + GA-rich Low_complexity Low_complexity 3 165 0 636 185 17 8 chr9 32990145 32990264 -109281180 - AluJb SINE Alu -40 272 153 242 196 0 0 chr9 32990321 32990367 -109281077 + (TG)n Simple_repeat Simple_repeat 2 47 0 328 160 67 40 chr9 32991346 32991421 -109280023 - AluJ/FRAM SINE Alu 0 302 226 1252 205 47 12 chr9 32991424 32991560 -109279884 - AluJb SINE Alu -49 263 133 207 0 0 0 chr9 32991560 32991583 -109279861 + (TG)n Simple_repeat Simple_repeat 2 24 0 1252 205 47 12 chr9 32991583 32991700 -109279744 - AluJb SINE Alu -179 133 1 1300 130 0 19 chr9 32992157 32992365 -109279079 + L1PA15 LINE L1 5962 6165 0 232 341 34 11 chr9 32993654 32993742 -109277702 + L2 LINE L2 3224 3313 0 852 151 63 0 chr9 32994378 32994537 -109276907 - L1MA5 LINE L1 -6 6294 6126 2373 92 0 0 chr9 32995553 32995858 -109275586 - AluSq SINE Alu -8 305 1 6690 66 5 2 chr9 32996331 32997564 -109273880 + L1PA7 LINE L1 4921 6168 0 24 53 0 0 chr9 32998042 32998080 -109273364 + AT_rich Low_complexity Low_complexity 1 38 0 2378 97 0 0 chr9 33000633 33000941 -109270503 - AluSc SINE Alu -1 308 1 953 50 0 0 chr9 33002200 33002320 -109269124 - L1PA4 LINE L1 0 6155 6036 6352 39 7 0 chr9 33002420 33003195 -109268249 - L1PA4 LINE L1 -122 6033 5254 11609 40 0 1 chr9 33003208 33004643 -109266801 + L1P LINE L1 2974 4407 -1739 22 35 0 0 chr9 33005554 33005583 -109265861 + AT_rich Low_complexity Low_complexity 1 29 0 384 40 0 0 chr9 33006302 33006352 -109265092 + (CA)n Simple_repeat Simple_repeat 1 50 0 266 49 0 24 chr9 33006921 33006962 -109264482 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 42832 57 16 1 chr9 33006962 33012995 -109258449 - L1PA3 LINE L1 -24 6131 1 1635 196 3 69 chr9 33013410 33013802 -109257642 + MER47A DNA MER2_type 1 366 0 2317 151 61 37 chr9 33015095 33015584 -109255860 + L1MA7 LINE L1 5782 6282 -9 1752 156 4 4 chr9 33015659 33015934 -109255510 + AluSx SINE Alu 1 275 -37 228 301 128 23 chr9 33016680 33016813 -109254631 - LTR67 LTR ERVL -248 309 163 369 283 40 11 chr9 33016956 33017133 -109254311 - MER113 DNA MER1_type? -339 182 1 180 0 0 0 chr9 33019020 33019040 -109252404 + (A)n Simple_repeat Simple_repeat 1 20 0 229 91 73 73 chr9 33019485 33019540 -109251904 - L1M2c LINE L1 -4781 2008 1954 197 119 24 0 chr9 33020954 33020996 -109250448 + (CA)n Simple_repeat Simple_repeat 2 44 0 1633 91 4 4 chr9 33021488 33021718 -109249726 + AluY SINE Alu 72 301 -10 359 310 21 7 chr9 33021778 33021920 -109249524 + L1M4 LINE L1 2 145 -6397 2732 155 33 51 chr9 33021969 33022881 -109248563 - MER52C LTR ERV1 -1 1277 303 241 253 159 60 chr9 33023088 33023270 -109248174 + L1M4 LINE L1 340 539 -6003 * 487 228 24 0 chr9 33023269 33023396 -109248048 - L1 LINE L1 -2455 3691 3562 * 1651 176 26 31 chr9 33023393 33024916 -109246528 + L1PB4 LINE L1 4592 6153 -3 2528 101 3 0 chr9 33024976 33025334 -109246110 + L1PB1 LINE L1 5787 6145 -6 255 79 0 0 chr9 33027775 33027813 -109243631 + (CA)n Simple_repeat Simple_repeat 2 39 0 768 353 106 30 chr9 33027982 33028760 -109242684 - L2 LINE L2 0 3313 2456 928 311 153 24 chr9 33028760 33029481 -109241963 - L2 LINE L2 -988 2326 1513 784 304 127 15 chr9 33029513 33029977 -109241467 - L2 LINE L2 -2427 887 372 24 32 0 0 chr9 33030986 33031017 -109240427 + AT_rich Low_complexity Low_complexity 1 31 0 921 299 70 24 chr9 33032600 33032974 -109238470 + LTR16A LTR ERVL 60 450 0 204 400 19 9 chr9 33033397 33033502 -109237942 + MIR SINE MIR 1 106 -156 35 54 0 0 chr9 33034161 33034217 -109237227 + AT_rich Low_complexity Low_complexity 1 56 0 838 236 4 36 chr9 33034307 33034532 -109236912 + MER20 DNA MER1_type 2 219 0 291 28 0 0 chr9 33035368 33035404 -109236040 + (TG)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr9 33035436 33035466 -109235978 + AT_rich Low_complexity Low_complexity 1 30 0 5121 152 19 8 chr9 33036324 33037414 -109234030 - L1P4 LINE L1 -649 5514 4413 21 0 0 0 chr9 33039350 33039371 -109232073 + AT_rich Low_complexity Low_complexity 1 21 0 906 326 38 30 chr9 33039659 33040132 -109231312 - HERV16 LTR ERVL -4214 782 306 236 254 15 0 chr9 33040169 33040236 -109231208 - L1MC/D LINE L1 -758 5575 5508 22 70 0 0 chr9 33040319 33040362 -109231082 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 33041611 33041638 -109229806 + AT_rich Low_complexity Low_complexity 1 27 0 2230 111 16 81 chr9 33041680 33042112 -109229332 - L1PA13 LINE L1 -3 6160 5757 3873 101 7 2 chr9 33042112 33042666 -109228778 + L1PA12 LINE L1 5347 5903 -265 6581 240 104 26 chr9 33042719 33044191 -109227253 + L1MD1 LINE L1 14 1369 -5171 237 65 0 0 chr9 33044191 33044222 -109227222 + (CA)n Simple_repeat Simple_repeat 2 32 0 6581 240 104 26 chr9 33044222 33044961 -109226483 + L1MD1 LINE L1 1369 2416 -4124 578 193 114 0 chr9 33044961 33045075 -109226369 + FLAM_C SINE Alu 1 127 -6 6581 240 104 26 chr9 33045075 33045171 -109226273 + L1MD1 LINE L1 2416 2503 -4037 2661 107 12 12 chr9 33045186 33045588 -109225856 + L1P4 LINE L1 5398 5799 -362 3386 222 73 23 chr9 33045827 33046607 -109224837 + L1MD1 LINE L1 5377 6237 -399 2220 130 28 3 chr9 33046607 33046962 -109224482 - THE1B LTR MaLR 0 364 1 3386 222 73 23 chr9 33046962 33047383 -109224061 + L1MD1 LINE L1 6237 6636 0 21 36 0 0 chr9 33047477 33047505 -109223939 + AT_rich Low_complexity Low_complexity 1 28 0 1728 188 0 0 chr9 33047505 33047813 -109223631 - AluJb SINE Alu -3 309 2 21 36 0 0 chr9 33048704 33048732 -109222712 + AT_rich Low_complexity Low_complexity 1 28 0 3342 114 4 0 chr9 33049844 33050354 -109221090 - L1P LINE L1 -758 5388 4877 5008 77 36 0 chr9 33050354 33051070 -109220374 + L1PA7 LINE L1 5438 6154 0 216 255 0 0 chr9 33052019 33052070 -109219374 + (CA)n Simple_repeat Simple_repeat 2 52 0 189 0 0 0 chr9 33052987 33053008 -109218436 + (CA)n Simple_repeat Simple_repeat 2 22 0 2063 99 24 10 chr9 33054156 33054448 -109216996 - AluSx SINE Alu -16 296 1 21 0 0 0 chr9 33055088 33055109 -109216335 + AT_rich Low_complexity Low_complexity 1 21 0 2095 136 0 10 chr9 33055128 33055430 -109216014 + AluSg SINE Alu 1 299 -11 25 0 0 0 chr9 33056282 33056307 -109215137 + AT_rich Low_complexity Low_complexity 1 25 0 3128 148 45 42 chr9 33058107 33058700 -109212744 + MER7C DNA MER2_type 1 595 -7 804 256 128 25 chr9 33059020 33059457 -109211987 + Charlie1b DNA MER1_type 41 522 -1 195 42 0 0 chr9 33060796 33060820 -109210624 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 200 259 0 17 chr9 33060922 33060980 -109210464 + CT-rich Low_complexity Low_complexity 4 60 0 201 336 78 16 chr9 33060980 33061108 -109210336 + MIR SINE MIR 77 212 -50 276 53 0 0 chr9 33062536 33062574 -109208870 + (CA)n Simple_repeat Simple_repeat 1 38 0 899 251 96 12 chr9 33062574 33062909 -109208535 + L1MC1 LINE L1 4260 4622 -1524 257 127 0 36 chr9 33062941 33062961 -109208483 - L1 LINE L1 -1298 4848 4829 4487 172 33 7 chr9 33062961 33063843 -109207601 + L1MC1 LINE L1 5424 6328 -5 257 127 0 36 chr9 33063843 33063877 -109207567 - L1 LINE L1 -1317 4829 4796 6306 90 7 21 chr9 33063877 33064854 -109206590 + L1PA10 LINE L1 5188 6151 -17 539 214 57 52 chr9 33064869 33065098 -109206346 + L1ME1 LINE L1 5651 5880 -286 718 146 24 8 chr9 33065159 33065282 -109206162 - L1PA16 LINE L1 -313 5853 5729 3248 137 41 60 chr9 33065328 33065964 -109205480 - L1PA16 LINE L1 -4 6162 5539 380 322 45 6 chr9 33065965 33066142 -109205302 + L1ME1 LINE L1 5978 6161 -5 215 367 13 0 chr9 33066478 33066557 -109204887 - L2 LINE L2 -17 3296 3217 327 268 34 34 chr9 33067187 33067268 -109204176 + (TA)n Simple_repeat Simple_repeat 1 81 -98 2981 196 18 5 chr9 33067268 33067865 -109203579 + MER6A DNA MER2_type 1 605 0 327 268 34 34 chr9 33067865 33067962 -109203482 + (TA)n Simple_repeat Simple_repeat 80 179 0 982 258 39 29 chr9 33067977 33068287 -109203157 - MER83C LTR ERV1 -12 361 49 1294 246 43 17 chr9 33068340 33068685 -109202759 - MER83C-int LTR ERV1 0 4880 4527 443 309 40 24 chr9 33068809 33069061 -109202383 - MER83C-int LTR ERV1 -2812 4944 4689 858 135 6 58 chr9 33069084 33069240 -109202204 - THE1A LTR MaLR 0 355 208 10802 110 14 2 chr9 33069340 33070855 -109200589 - THE1A-int LTR MaLR -47 1533 1 2196 105 27 68 chr9 33070855 33071225 -109200219 - THE1A LTR MaLR 0 355 1 584 336 32 55 chr9 33071245 33071861 -109199583 - MER83C-int LTR ERV1 -2097 2857 2256 1439 306 58 22 chr9 33072028 33072767 -109198677 - MER83C-int LTR ERV1 -3073 1881 1116 4346 242 52 25 chr9 33072925 33074150 -109197294 - MER83C-int LTR ERV1 -3847 1033 4 929 256 31 47 chr9 33074153 33074473 -109196971 - MER83C LTR ERV1 -10 363 49 2214 116 0 0 chr9 33074533 33074827 -109196617 + AluY SINE Alu 1 294 -17 269 210 16 0 chr9 33075094 33075156 -109196288 - MER41B LTR ERV1 -91 544 482 2319 199 9 0 chr9 33075157 33075620 -109195824 + L1 LINE L1 4538 5004 -1142 274 311 19 10 chr9 33075837 33075940 -109195504 + L2 LINE L2 3210 3313 0 26 50 0 0 chr9 33076691 33076731 -109194713 + AT_rich Low_complexity Low_complexity 1 40 0 286 267 155 0 chr9 33077233 33077349 -109194095 - MER67D LTR ERV1 0 514 381 1393 197 21 21 chr9 33077388 33077678 -109193766 - AluJo SINE Alu -12 300 11 1657 176 27 67 chr9 33077689 33078092 -109193352 - MER67D LTR ERV1 -127 387 1 259 248 117 39 chr9 33078709 33078915 -109192529 + HAL1 LINE L1 2284 2505 -2 1661 277 94 25 chr9 33082242 33083019 -109188425 + L1MEc LINE L1 36 866 -5530 21 0 0 0 chr9 33083023 33083044 -109188400 + AT_rich Low_complexity Low_complexity 1 21 0 1188 282 37 11 chr9 33083064 33083522 -109187922 + L1M4 LINE L1 3325 3794 -2352 1173 197 33 158 chr9 33083525 33084043 -109187401 - MSTB2 LTR MaLR -4 453 1 4020 252 55 18 chr9 33084044 33085514 -109185930 + L1M4 LINE L1 3792 5321 -825 1803 161 13 7 chr9 33085514 33085824 -109185620 + AluJb SINE Alu 1 312 0 4020 252 55 18 chr9 33085824 33085853 -109185591 + L1M4 LINE L1 5321 5347 -799 211 284 57 57 chr9 33085921 33086009 -109185435 - L2 LINE L2 -35 3237 3150 333 82 0 0 chr9 33086548 33086597 -109184847 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 21 0 0 0 chr9 33087437 33087458 -109183986 + AT_rich Low_complexity Low_complexity 1 21 0 42581 50 3 2 chr9 33087509 33093637 -109177807 - L1PA4 LINE L1 -8 6147 13 572 167 0 18 chr9 33093687 33093801 -109177643 + L1PA13 LINE L1 6020 6131 -32 756 186 0 0 chr9 33094090 33094214 -109177230 + FRAM SINE Alu 38 161 -15 24 0 0 0 chr9 33094559 33094583 -109176861 + AT_rich Low_complexity Low_complexity 1 24 0 1076 267 57 35 chr9 33094880 33095512 -109175932 - L1M4 LINE L1 -1492 4654 4009 * 2321 236 58 19 chr9 33095496 33096239 -109175205 - L1M4 LINE L1 -1970 4987 4216 232 233 0 0 chr9 33096251 33096294 -109175150 + polypyrimidine Low_complexity Low_complexity 2 44 0 345 300 17 17 chr9 33096317 33096437 -109175007 + Charlie8 DNA MER1_type 146 265 -2152 601 275 58 0 chr9 33099553 33099811 -109171633 - L1M4 LINE L1 -3171 3786 3514 254 207 69 0 chr9 33099867 33099925 -109171519 - L1M4 LINE L1 -5775 1084 1023 673 270 131 4 chr9 33099941 33100193 -109171251 - L1M4 LINE L1 -5886 973 690 2488 210 30 0 chr9 33100222 33100683 -109170761 - MER70B LTR ERVL -103 475 1 786 333 136 39 chr9 33100683 33101220 -109170224 - L1M4 LINE L1 -6161 698 110 198 0 0 0 chr9 33101220 33101242 -109170202 + (TC)n Simple_repeat Simple_repeat 1 22 0 239 0 32 0 chr9 33101242 33101273 -109170171 + (CA)n Simple_repeat Simple_repeat 1 32 0 204 97 0 0 chr9 33101360 33101391 -109170053 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 241 246 108 0 chr9 33101398 33101463 -109169981 - L1MDa LINE L1 -6465 75 4 22 0 0 0 chr9 33102051 33102073 -109169371 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 33102305 33102341 -109169103 + AT_rich Low_complexity Low_complexity 1 36 0 484 317 85 29 chr9 33102547 33102793 -109168651 - L1M4 LINE L1 -2192 3954 3695 2016 56 12 0 chr9 33103435 33103686 -109167758 - AluY SINE Alu -5 306 53 23 54 0 0 chr9 33104076 33104113 -109167331 + AT_rich Low_complexity Low_complexity 1 37 0 320 252 106 41 chr9 33105184 33105307 -109166137 + MIR SINE MIR 121 251 -11 843 290 152 27 chr9 33105357 33106291 -109165153 + L1M4 LINE L1 1390 2440 -3944 667 255 41 88 chr9 33106321 33106958 -109164486 + L1M4 LINE L1 5023 5630 -815 234 365 14 35 chr9 33109655 33109800 -109161644 - MIR3 SINE MIR -26 182 41 180 0 0 0 chr9 33111748 33111768 -109159676 + (A)n Simple_repeat Simple_repeat 1 20 0 200 268 41 0 chr9 33112361 33112458 -109158986 + (TA)n Simple_repeat Simple_repeat 2 102 0 761 314 40 36 chr9 33112508 33112860 -109158584 + L1M3d LINE L1 55 677 -5214 265 323 79 63 chr9 33112901 33113090 -109158354 + L1M3d LINE L1 202 393 -5498 498 122 12 0 chr9 33113173 33113255 -109158189 + L1MB1 LINE L1 5320 5402 -766 * 2266 67 7 0 chr9 33113250 33113550 -109157894 - L1PA5 LINE L1 -1068 5078 4777 7424 38 1 0 chr9 33113550 33114628 -109156816 + L1PA5 LINE L1 5075 6153 -1 3021 201 52 36 chr9 33114628 33115400 -109156044 + L1MB1 LINE L1 5385 6168 0 403 302 72 0 chr9 33115616 33115755 -109155689 + MIR SINE MIR 59 207 -55 273 217 228 6 chr9 33116210 33116390 -109155054 - MER97a DNA MER1_type? -2 892 673 1442 236 75 16 chr9 33116409 33116782 -109154662 - LTR52 LTR ERVL -20 401 7 * 1697 275 73 14 chr9 33116781 33117422 -109154022 - MER97b DNA MER1_type? -370 683 5 22 0 0 0 chr9 33117787 33117809 -109153635 + AT_rich Low_complexity Low_complexity 1 22 0 491 259 76 6 chr9 33118857 33119508 -109151936 - L1MB8 LINE L1 -56 6122 5401 195 283 152 28 chr9 33119899 33120044 -109151400 - L3 LINE CR1 -79 1498 1336 256 339 107 36 chr9 33120291 33120515 -109150929 - MIR SINE MIR -3 259 20 189 0 0 0 chr9 33122621 33122642 -109148802 + (TG)n Simple_repeat Simple_repeat 2 22 0 1016 218 0 15 chr9 33122659 33122861 -109148583 + Tigger3(Golem) DNA MER2_type 3 201 -2828 25 65 0 0 chr9 33122863 33122909 -109148535 + AT_rich Low_complexity Low_complexity 1 46 0 2846 138 69 11 chr9 33122999 33123251 -109148193 + Tigger3(Golem) DNA MER2_type 2453 2689 -340 2108 143 40 3 chr9 33123251 33123602 -109147842 + THE1B LTR MaLR 1 364 0 2846 138 69 11 chr9 33123602 33123872 -109147572 + Tigger3(Golem) DNA MER2_type 2689 3005 -24 189 0 0 0 chr9 33126375 33126396 -109145048 + (A)n Simple_repeat Simple_repeat 1 21 0 1694 129 39 70 chr9 33126680 33127067 -109144377 - THE1C LTR MaLR 0 375 1 302 179 0 15 chr9 33128541 33128608 -109142836 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 215 232 18 0 chr9 33129004 33129060 -109142384 + GA-rich Low_complexity Low_complexity 3 59 0 22 0 0 0 chr9 33129660 33129682 -109141762 + AT_rich Low_complexity Low_complexity 1 22 0 887 243 61 22 chr9 33130248 33130609 -109140835 - LTR52 LTR ERVL -4 417 1 1370 271 69 73 chr9 33132399 33132430 -109139014 + L1MD1 LINE L1 46 76 -6464 1327 182 4 4 chr9 33132430 33132666 -109138778 + MER46A DNA MER2_type 1 236 0 1370 271 69 73 chr9 33132666 33133301 -109138143 + L1MD1 LINE L1 76 709 -5831 2347 182 29 17 chr9 33133330 33133809 -109137635 + L1MA7 LINE L1 5513 5997 -294 1787 256 22 56 chr9 33133806 33134534 -109136910 + L1MD1 LINE L1 4212 4914 -1626 * 624 232 47 50 chr9 33134547 33134763 -109136681 - MLT1D LTR MaLR -237 230 23 3756 187 26 50 chr9 33134772 33135659 -109135785 + L1MD1 LINE L1 5751 6616 -20 22 35 0 0 chr9 33135664 33135693 -109135751 + AT_rich Low_complexity Low_complexity 1 29 0 326 290 23 69 chr9 33136371 33136502 -109134942 + MIR SINE MIR 99 223 -39 214 330 31 62 chr9 33136688 33136882 -109134562 + L2 LINE L2 2725 2912 -402 217 293 154 41 chr9 33137106 33137229 -109134215 + L2 LINE L2 3136 3272 0 186 274 157 0 chr9 33137434 33137485 -109133959 + L3 LINE CR1 1159 1217 -360 939 168 33 39 chr9 33140463 33140900 -109130544 - MLT1D LTR MaLR -2 503 3 358 267 114 15 chr9 33141283 33141414 -109130030 + MIR SINE MIR 80 223 -39 203 309 174 29 chr9 33141962 33142169 -109129275 - MIR SINE MIR -11 251 15 35 24 0 0 chr9 33142669 33142711 -109128733 + AT_rich Low_complexity Low_complexity 1 42 0 727 242 17 48 chr9 33143534 33143765 -109127679 + MLT1B LTR MaLR 3 226 -164 653 234 59 17 chr9 33143774 33144045 -109127399 - MER52A LTR ERV1 -992 763 1 3082 254 76 12 chr9 33144146 33146313 -109125131 - L1MB7 LINE L1 -10 6672 4363 1522 172 38 78 chr9 33146327 33146722 -109124722 - MLT1B LTR MaLR -11 379 1 1259 285 18 20 chr9 33146727 33147228 -109124216 - L1MB7 LINE L1 -2291 4353 3854 6023 142 27 37 chr9 33147242 33147569 -109123875 - L1MA1 LINE L1 0 6302 5973 330 45 0 0 chr9 33147569 33147613 -109123831 + (TG)n Simple_repeat Simple_repeat 1 44 0 276 197 33 0 chr9 33147613 33147674 -109123770 - AluJ/FRAM SINE Alu -23 279 217 6023 142 27 37 chr9 33147674 33149430 -109122014 - L1MA1 LINE L1 -327 5975 4176 216 67 0 0 chr9 33149432 33149462 -109121982 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1275 257 88 24 chr9 33149465 33149559 -109121885 - L1MB7 LINE L1 -2827 3817 3730 2216 108 7 0 chr9 33149559 33149865 -109121579 + AluSp SINE Alu 1 308 -5 1275 257 88 24 chr9 33149865 33150490 -109120954 - L1MB7 LINE L1 -2914 3730 3052 562 307 35 29 chr9 33150492 33150832 -109120612 - L1MB7 LINE L1 -5636 906 525 23 0 0 0 chr9 33150850 33150873 -109120571 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 33150991 33151021 -109120423 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr9 33151271 33151302 -109120142 + AT_rich Low_complexity Low_complexity 1 31 0 392 188 0 0 chr9 33151404 33151468 -109119976 + AluS SINE Alu 1 64 -239 824 204 0 0 chr9 33151506 33151658 -109119786 + AluSg/x SINE Alu 145 296 -14 25 31 0 0 chr9 33151725 33151757 -109119687 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr9 33151853 33151888 -109119556 + AT_rich Low_complexity Low_complexity 1 35 0 186 171 0 0 chr9 33152584 33152625 -109118819 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 57 0 0 chr9 33152641 33152676 -109118768 + AT_rich Low_complexity Low_complexity 1 35 0 715 264 66 98 chr9 33152745 33153252 -109118192 + L1ME3A LINE L1 4927 5449 -721 1937 198 23 26 chr9 33153252 33153681 -109117763 + MSTB1 LTR MaLR 3 430 -2 715 264 66 98 chr9 33153681 33154039 -109117405 + L1ME3A LINE L1 5449 5758 -412 920 174 10 24 chr9 33154039 33154246 -109117198 + L1MA7 LINE L1 6082 6285 -6 715 264 66 98 chr9 33154246 33154399 -109117045 + L1ME3A LINE L1 5758 5914 -256 244 264 33 22 chr9 33154443 33154534 -109116910 + L1ME3A LINE L1 6053 6144 -26 3501 204 52 20 chr9 33156197 33157291 -109114153 + L1MB7 LINE L1 4890 6167 -17 1638 63 0 0 chr9 33157301 33157508 -109113936 - L1PA5 LINE L1 -1 6153 5947 35111 53 6 2 chr9 33157508 33163188 -109108256 - L1P2 LINE L1 -438 5716 11 259 236 106 56 chr9 33163219 33163307 -109108137 + L1MC5 LINE L1 5812 5894 -1914 3151 163 20 21 chr9 33163307 33163913 -109107531 + MER6A DNA MER2_type 1 605 0 259 236 106 56 chr9 33163913 33163985 -109107459 + L1MC5 LINE L1 5894 5980 -1828 2081 102 65 0 chr9 33164077 33164370 -109107074 + AluSq SINE Alu 2 313 0 25 51 0 0 chr9 33164409 33164448 -109106996 + AT_rich Low_complexity Low_complexity 1 39 0 601 220 140 35 chr9 33165409 33165681 -109105763 + L1MC5 LINE L1 6593 6893 -915 407 340 41 16 chr9 33165974 33166168 -109105276 + MIR3 SINE MIR 6 204 -4 3087 97 9 14 chr9 33166216 33166658 -109104786 - MLT2A1 LTR ERVL -3 441 2 21 57 0 0 chr9 33166976 33167011 -109104433 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 33167108 33167138 -109104306 + AT_rich Low_complexity Low_complexity 1 30 0 39 50 0 0 chr9 33167244 33167304 -109104140 + AT_rich Low_complexity Low_complexity 1 60 0 681 194 16 0 chr9 33167860 33167989 -109103455 + FLAM_C SINE Alu 3 133 0 200 224 0 17 chr9 33168334 33168392 -109103052 + A-rich Low_complexity Low_complexity 4 60 0 273 333 31 38 chr9 33168449 33168608 -109102836 - MIR SINE MIR -32 230 73 4227 138 39 35 chr9 33170852 33171623 -109099821 + Tigger1 DNA MER2_type 528 1301 -1117 1124 176 27 0 chr9 33171660 33171881 -109099563 + Tigger1 DNA MER2_type 2190 2416 -2 1513 228 84 97 chr9 33171887 33172817 -109098627 - MER57A-int LTR ERV1 -2156 2780 1863 428 206 19 65 chr9 33172887 33172994 -109098450 - MER34 LTR ERV1 -305 237 136 733 213 134 4 chr9 33173138 33173415 -109098029 - MER57A-int LTR ERV1 -3481 1455 1143 271 175 0 63 chr9 33173560 33173623 -109097821 - MER57A-int LTR ERV1 -3996 940 882 808 251 154 27 chr9 33173960 33174219 -109097225 - MER57A-int LTR ERV1 -7243 294 3 701 221 135 109 chr9 33174222 33174615 -109096829 - MER57A LTR ERV1 0 403 1 251 256 209 0 chr9 33174962 33175048 -109096396 - L2 LINE L2 0 3272 3169 25 31 0 0 chr9 33175679 33175711 -109095733 + AT_rich Low_complexity Low_complexity 1 32 0 723 167 8 23 chr9 33176480 33176612 -109094832 - FLAM_C SINE Alu -13 130 1 201 94 0 0 chr9 33177464 33177496 -109093948 + (TC)n Simple_repeat Simple_repeat 1 32 0 412 345 107 11 chr9 33177692 33177953 -109093491 + L2 LINE L2 2565 2850 -464 270 294 40 16 chr9 33178210 33178336 -109093108 - L1M4 LINE L1 -5361 1181 1053 21 0 0 0 chr9 33178536 33178557 -109092887 + AT_rich Low_complexity Low_complexity 1 21 0 276 187 27 13 chr9 33178562 33178587 -109092857 - L1MDa LINE L1 -3923 2617 2594 2159 113 0 0 chr9 33178587 33178887 -109092557 - AluSx SINE Alu -12 300 1 276 187 27 13 chr9 33178887 33178936 -109092508 - L1MDa LINE L1 -3946 2594 2542 2050 133 19 27 chr9 33178952 33179320 -109092124 - L1MA2 LINE L1 0 6304 5940 305 179 103 0 chr9 33179321 33179399 -109092045 - L1MDa LINE L1 -3984 2556 2471 2678 151 16 0 chr9 33179412 33179863 -109091581 - L1PA13 LINE L1 -11 6152 5695 436 115 0 0 chr9 33181603 33181664 -109089780 - L1PA13 LINE L1 -252 5911 5851 2148 96 17 0 chr9 33181694 33181986 -109089458 + AluSp SINE Alu 1 297 -16 270 0 0 0 chr9 33181986 33182016 -109089428 + (TA)n Simple_repeat Simple_repeat 2 31 0 6885 142 17 21 chr9 33182745 33184606 -109086838 + L1MA2 LINE L1 4450 6304 0 314 202 109 62 chr9 33184615 33184808 -109086636 + L1ME LINE L1 681 882 -5188 1720 174 6 25 chr9 33185002 33185319 -109086125 + AluJo SINE Alu 2 312 0 256 279 36 103 chr9 33185868 33186033 -109085411 + MLT1G1-int LTR MaLR 1034 1187 -184 251 275 99 0 chr9 33186209 33186300 -109085144 + MLT1G1 LTR MaLR 2 101 -494 1358 67 0 6 chr9 33187491 33187670 -109083774 + AluY SINE Alu 132 309 -2 822 318 102 11 chr9 33188008 33188370 -109083074 + MLT1G1 LTR MaLR 151 545 -50 42 36 0 0 chr9 33189530 33189586 -109081858 + AT_rich Low_complexity Low_complexity 1 56 0 296 181 96 0 chr9 33190613 33190696 -109080748 + L1MC4 LINE L1 6615 6705 -1337 250 143 16 63 chr9 33192020 33192083 -109079361 + L1MC4 LINE L1 6648 6707 -1335 21 0 0 0 chr9 33192106 33192127 -109079317 + AT_rich Low_complexity Low_complexity 1 21 0 2088 116 0 10 chr9 33193488 33193780 -109077664 + AluSx SINE Alu 3 291 -21 36 77 0 0 chr9 33193931 33194009 -109077435 + AT_rich Low_complexity Low_complexity 1 78 0 258 239 14 14 chr9 33194075 33194146 -109077298 + MIR SINE MIR 188 258 -4 22 0 0 0 chr9 33194230 33194252 -109077192 + AT_rich Low_complexity Low_complexity 1 22 0 216 171 49 0 chr9 33194388 33194440 -109077004 + (TATG)n Simple_repeat Simple_repeat 1 54 0 1981 122 0 7 chr9 33194564 33194883 -109076561 + AluSq SINE Alu 1 317 0 502 302 55 19 chr9 33194947 33195258 -109076186 + L1M4 LINE L1 4018 4339 -1807 316 220 77 11 chr9 33195258 33195349 -109076095 - MER58B DNA MER1_type -5 336 240 21 0 0 0 chr9 33197015 33197036 -109074408 + AT_rich Low_complexity Low_complexity 1 21 0 588 207 6 22 chr9 33200187 33200366 -109071078 + CT-rich Low_complexity Low_complexity 3 178 0 372 22 0 0 chr9 33200913 33200958 -109070486 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 33201141 33201162 -109070282 + AT_rich Low_complexity Low_complexity 1 21 0 1337 219 39 28 chr9 33201298 33201659 -109069785 + MLT1A1 LTR MaLR 1 365 0 778 309 93 30 chr9 33201780 33202489 -109068955 + L2 LINE L2 2525 3280 -33 21 0 0 0 chr9 33203599 33203620 -109067824 + AT_rich Low_complexity Low_complexity 1 21 0 1763 249 5 13 chr9 33203671 33204069 -109067375 + MSTD LTR MaLR 2 396 0 2511 245 10 7 chr9 33204071 33204666 -109066778 + MSTD-int LTR MaLR 2 598 -1137 1824 42 5 0 chr9 33204667 33204880 -109066564 + AluY SINE Alu 69 282 -29 961 267 82 98 chr9 33204990 33205480 -109065964 + MSTD-int LTR MaLR 604 1085 -650 1710 212 89 31 chr9 33205501 33206019 -109065425 + LTR10A LTR ERV1 1 548 -61 2527 248 40 2 chr9 33206039 33206596 -109064848 + MSTD-int LTR MaLR 1107 1684 -51 1706 204 15 60 chr9 33206652 33207054 -109064390 + MSTD LTR MaLR 13 396 0 24 0 0 0 chr9 33207268 33207292 -109064152 + AT_rich Low_complexity Low_complexity 1 24 0 2620 150 62 39 chr9 33207826 33207926 -109063518 - LTR59 LTR ERV1 -18 579 483 208 0 62 0 chr9 33207926 33207958 -109063486 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2620 150 62 39 chr9 33207958 33208417 -109063027 - LTR59 LTR ERV1 -114 483 7 1486 101 0 0 chr9 33209224 33209423 -109062021 + AluSg/x SINE Alu 106 304 -8 762 219 87 21 chr9 33209458 33209808 -109061636 - L1MB4 LINE L1 -1 6179 5783 466 204 0 0 chr9 33209842 33209935 -109061509 + L1M2 LINE L1 2356 2448 -4401 38 0 0 0 chr9 33209935 33209973 -109061471 + AT_rich Low_complexity Low_complexity 1 38 0 3178 191 38 73 chr9 33209973 33210718 -109060726 + L1M2 LINE L1 2442 3204 -3644 555 152 0 20 chr9 33210718 33210809 -109060635 + FLAM_A SINE Alu 32 122 -189 180 0 0 0 chr9 33210809 33210829 -109060615 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 3178 191 38 73 chr9 33210836 33211547 -109059897 + L1M2 LINE L1 3204 3938 -2910 958 246 126 9 chr9 33211552 33211817 -109059627 - L1M4c LINE L1 -5326 1216 926 243 0 0 0 chr9 33211817 33211844 -109059600 + (TG)n Simple_repeat Simple_repeat 2 28 0 958 246 126 9 chr9 33211844 33211955 -109059489 - L1M4c LINE L1 -5616 926 829 820 314 82 39 chr9 33211962 33212630 -109058814 - L1M4c LINE L1 -5844 698 2 438 20 0 0 chr9 33212933 33212984 -109058460 + (TTA)n Simple_repeat Simple_repeat 1 51 0 320 277 12 24 chr9 33213814 33213897 -109057547 - MER20B DNA MER1_type -610 173 92 710 314 53 62 chr9 33214456 33214946 -109056498 - MLT1H LTR MaLR -2 547 1 216 200 0 0 chr9 33216058 33216128 -109055316 + T-rich Low_complexity Low_complexity 1 70 0 1366 218 38 51 chr9 33216151 33216546 -109054898 + MLT1B LTR MaLR 1 390 0 550 304 6 0 chr9 33216711 33216869 -109054575 + FRAM SINE Alu 3 161 -15 188 277 12 48 chr9 33218417 33218500 -109052944 - MIR SINE MIR -107 155 76 29 0 0 0 chr9 33218556 33218585 -109052859 + AT_rich Low_complexity Low_complexity 1 29 0 260 259 24 24 chr9 33218593 33218678 -109052766 + L2 LINE L2 2665 2749 -565 2110 99 7 0 chr9 33218678 33218962 -109052482 + AluSg SINE Alu 1 286 -24 207 0 0 0 chr9 33218966 33218989 -109052455 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 281 310 28 7 chr9 33219750 33219892 -109051552 + L1M3de LINE L1 1755 1899 -4754 3449 76 0 2 chr9 33219967 33220426 -109051018 + L1PA7 LINE L1 5695 6152 -2 237 269 41 7 chr9 33220920 33221065 -109050379 + L1MEc LINE L1 2093 2242 -4154 6040 74 5 16 chr9 33221632 33222459 -109048985 + L1PA6 LINE L1 5332 6149 -5 237 255 55 21 chr9 33222953 33223098 -109048346 + L1MEc LINE L1 2093 2242 -4154 432 326 85 7 chr9 33223553 33224129 -109047315 + L1MCc LINE L1 1263 1890 -4889 27 29 0 0 chr9 33224168 33224202 -109047242 + AT_rich Low_complexity Low_complexity 1 34 0 1002 342 53 23 chr9 33224873 33225443 -109046001 + L1PA16 LINE L1 788 1374 -6200 280 348 33 7 chr9 33225432 33225723 -109045721 + L1PA16 LINE L1 2075 2298 -5276 * 4979 252 36 24 chr9 33225942 33228728 -109042716 + L1PA16 LINE L1 2182 4962 -2622 * 42558 32 21 1 chr9 33228724 33234792 -109036652 + L1PA2 LINE L1 1 6191 0 451 191 95 48 chr9 33234797 33234944 -109036500 - MER112 DNA MER1_type -101 159 6 29 47 0 0 chr9 33235068 33235111 -109036333 + AT_rich Low_complexity Low_complexity 1 43 0 276 30 0 0 chr9 33235245 33235278 -109036166 + (A)n Simple_repeat Simple_repeat 1 33 0 7567 211 21 14 chr9 33235279 33237264 -109034180 + L1PA16 LINE L1 4949 6933 -671 2130 175 44 18 chr9 33237264 33237696 -109033748 + L1PA16 LINE L1 7143 7588 -16 2951 222 48 7 chr9 33237707 33238441 -109033003 - L1MB2 LINE L1 -31 6140 5377 342 0 0 0 chr9 33238549 33238587 -109032857 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 305 221 39 chr9 33239376 33239530 -109031914 + MIR SINE MIR 47 228 -34 25 0 0 0 chr9 33239867 33239892 -109031552 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr9 33240262 33240293 -109031151 + AT_rich Low_complexity Low_complexity 1 31 0 214 208 28 28 chr9 33240868 33240940 -109030504 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 57 0 0 chr9 33241236 33241271 -109030173 + AT_rich Low_complexity Low_complexity 1 35 0 264 290 49 33 chr9 33241784 33241808 -109029636 + L1MEd LINE L1 1042 1064 -5055 249 33 0 0 chr9 33241808 33241838 -109029606 + (TA)n Simple_repeat Simple_repeat 1 30 0 264 290 49 33 chr9 33241838 33241996 -109029448 + L1MEd LINE L1 1064 1227 -4892 286 198 22 99 chr9 33242967 33243058 -109028386 + MLT1J LTR MaLR 388 471 -40 29 28 0 0 chr9 33243703 33243739 -109027705 + AT_rich Low_complexity Low_complexity 1 36 0 1858 151 27 3 chr9 33244560 33244858 -109026586 - AluJo SINE Alu -7 305 1 810 340 98 14 chr9 33244945 33245655 -109025789 - L2 LINE L2 -10 3303 2534 2073 109 6 32 chr9 33246080 33246393 -109025051 - AluSp SINE Alu -6 307 3 31 0 0 0 chr9 33246399 33246430 -109025014 + AT_rich Low_complexity Low_complexity 1 31 0 266 349 24 8 chr9 33246968 33247094 -109024350 + MER96 DNA MER1_type? 45 172 -3 317 87 0 0 chr9 33247293 33247339 -109024105 + MADE1 DNA Mariner 1 46 -34 339 22 22 0 chr9 33247379 33247424 -109024020 + MADE1 DNA Mariner 35 80 0 366 325 49 6 chr9 33247432 33247595 -109023849 + MIR SINE MIR 92 261 -1 22 0 0 0 chr9 33247806 33247828 -109023616 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 33247963 33247995 -109023449 + AT_rich Low_complexity Low_complexity 1 32 0 932 268 127 63 chr9 33249831 33250655 -109020789 + HAL1b LINE L1 440 1316 -32 822 146 15 0 chr9 33250746 33250876 -109020568 + AluJo/FLAM SINE Alu 1 132 -180 366 254 16 71 chr9 33250878 33251004 -109020440 + AluSc SINE Alu 181 299 0 21 36 0 0 chr9 33251247 33251275 -109020169 + AT_rich Low_complexity Low_complexity 1 28 0 231 88 0 0 chr9 33251778 33251812 -109019632 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 291 233 108 97 chr9 33252254 33252430 -109019014 + MER104 DNA Tc2 1 178 -2 195 42 0 0 chr9 33253510 33253534 -109017910 + (TTG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 33254005 33254025 -109017419 + (TA)n Simple_repeat Simple_repeat 1 20 0 26 64 0 0 chr9 33254103 33254150 -109017294 + AT_rich Low_complexity Low_complexity 1 47 0 679 214 0 0 chr9 33254736 33254867 -109016577 - MER52A LTR ERV1 -208 1547 1417 3768 165 25 3 chr9 33255134 33255776 -109015668 - MER52A LTR ERV1 0 1755 1100 1749 234 51 2 chr9 33255897 33256351 -109015093 - L1MB1 LINE L1 -362 5827 5352 342 0 0 0 chr9 33256439 33256477 -109014967 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 305 221 39 chr9 33257266 33257420 -109014024 + MIR SINE MIR 47 228 -34 25 0 0 0 chr9 33257757 33257782 -109013662 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr9 33258152 33258183 -109013261 + AT_rich Low_complexity Low_complexity 1 31 0 214 208 28 28 chr9 33258758 33258830 -109012614 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 57 0 0 chr9 33259126 33259161 -109012283 + AT_rich Low_complexity Low_complexity 1 35 0 264 290 49 33 chr9 33259674 33259698 -109011746 + L1MEd LINE L1 1042 1064 -5055 249 33 0 0 chr9 33259698 33259728 -109011716 + (TA)n Simple_repeat Simple_repeat 1 30 0 264 290 49 33 chr9 33259728 33259886 -109011558 + L1MEd LINE L1 1064 1227 -4892 261 186 23 105 chr9 33260858 33260944 -109010500 + MLT1J LTR MaLR 388 466 -45 29 28 0 0 chr9 33261590 33261626 -109009818 + AT_rich Low_complexity Low_complexity 1 36 0 1884 151 27 3 chr9 33262447 33262745 -109008699 - AluJo SINE Alu -7 305 1 801 343 97 13 chr9 33262832 33263542 -109007902 - L2 LINE L2 -10 3303 2534 2086 112 6 32 chr9 33263967 33264280 -109007164 - AluSp SINE Alu -6 307 3 31 0 0 0 chr9 33264286 33264317 -109007127 + AT_rich Low_complexity Low_complexity 1 31 0 267 349 24 8 chr9 33264855 33264981 -109006463 + MER96 DNA MER1_type? 45 172 -3 315 87 0 0 chr9 33265180 33265226 -109006218 + MADE1 DNA Mariner 1 46 -34 338 22 22 0 chr9 33265266 33265311 -109006133 + MADE1 DNA Mariner 35 80 0 357 325 49 6 chr9 33265319 33265482 -109005962 + MIR SINE MIR 92 261 -1 22 0 0 0 chr9 33265693 33265715 -109005729 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 33265850 33265882 -109005562 + AT_rich Low_complexity Low_complexity 1 32 0 847 271 119 55 chr9 33267718 33268542 -109002902 + HAL1b LINE L1 440 1316 -32 833 146 15 0 chr9 33268633 33268763 -109002681 + AluJo/FLAM SINE Alu 1 132 -180 366 254 16 71 chr9 33268765 33268891 -109002553 + AluSc SINE Alu 181 299 0 21 36 0 0 chr9 33269134 33269162 -109002282 + AT_rich Low_complexity Low_complexity 1 28 0 231 88 0 0 chr9 33269665 33269699 -109001745 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 281 233 108 97 chr9 33270141 33270317 -109001127 + MER104 DNA Tc2 1 178 -2 195 42 0 0 chr9 33271397 33271421 -109000023 + (TTG)n Simple_repeat Simple_repeat 1 24 0 700 214 0 0 chr9 33271777 33271908 -108999536 - MER52A LTR ERV1 -208 1547 1417 7599 189 133 6 chr9 33272175 33273733 -108997711 - MER52A LTR ERV1 0 1755 1 563 244 8 0 chr9 33276045 33276172 -108995272 + Tigger3(Golem) DNA MER2_type 1 128 -2901 4590 155 25 27 chr9 33276174 33276931 -108994513 + Tigger3(Golem) DNA MER2_type 2117 2873 -156 1988 158 3 51 chr9 33276931 33277285 -108994159 - MER1B DNA MER1_type 0 337 1 4590 155 25 27 chr9 33277285 33277422 -108994022 + Tigger3(Golem) DNA MER2_type 2873 3009 -20 2787 209 27 11 chr9 33277429 33277983 -108993461 - MER52A LTR ERV1 -2 1753 1191 3574 51 2 2 chr9 33277983 33278431 -108993013 + LTR7 LTR ERV1 1 448 -2 5796 102 19 43 chr9 33278433 33279418 -108992026 + HERVH LTR ERV1 1 962 -6751 5768 119 0 12 chr9 33279518 33280412 -108991032 + HERVH LTR ERV1 2113 2995 -4718 964 133 7 0 chr9 33280391 33280541 -108990903 + HERVH LTR ERV1 3140 3290 -4423 * 27332 89 8 16 chr9 33280531 33284854 -108986590 + HERVH LTR ERV1 3492 7713 0 3503 60 2 2 chr9 33284854 33285302 -108986142 + LTR7 LTR ERV1 1 448 -2 3923 233 54 30 chr9 33285304 33286396 -108985048 - MER52A LTR ERV1 -560 1195 1 397 246 64 0 chr9 33286425 33286535 -108984909 + MIR SINE MIR 112 228 -34 1649 207 19 16 chr9 33288367 33288690 -108982754 - MLT1A1 LTR MaLR -41 324 1 215 211 0 0 chr9 33288690 33288728 -108982716 + (ATG)n Simple_repeat Simple_repeat 2 39 0 256 264 14 0 chr9 33288743 33288815 -108982629 + L1MA9 LINE L1 6087 6159 -153 554 278 67 16 chr9 33288855 33289049 -108982395 - MIR SINE MIR -57 205 2 198 71 0 0 chr9 33289301 33289329 -108982115 + (CA)n Simple_repeat Simple_repeat 1 28 0 305 240 146 0 chr9 33289391 33289487 -108981957 - L1ME4a LINE L1 -260 5861 5752 334 358 19 0 chr9 33289501 33289663 -108981781 - L1ME4a LINE L1 -412 5709 5545 351 268 24 41 chr9 33289727 33289850 -108981594 - L1ME4a LINE L1 -673 5448 5328 264 322 15 20 chr9 33290307 33290506 -108980938 - L1MC/D LINE L1 -1909 6293 6096 1789 181 29 18 chr9 33291152 33291495 -108979949 + MER7A DNA MER2_type 1 345 -1 22 35 0 0 chr9 33291612 33291641 -108979803 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr9 33291888 33291937 -108979507 + AT_rich Low_complexity Low_complexity 1 49 0 52 0 0 0 chr9 33292499 33292551 -108978893 + AT_rich Low_complexity Low_complexity 1 52 0 7427 138 31 7 chr9 33293157 33294426 -108977018 - HSMAR2 DNA Mariner -1 1301 2 892 282 79 10 chr9 33294684 33295180 -108976264 - L1MC/D LINE L1 -1523 5017 4488 468 91 0 0 chr9 33295263 33295329 -108976115 - AluSp/q SINE Alu -12 301 236 1149 146 0 11 chr9 33295329 33295514 -108975930 - AluSx SINE Alu -127 185 3 612 334 73 14 chr9 33295524 33296249 -108975195 - L1MC/D LINE L1 -2300 4240 3473 446 226 83 11 chr9 33296259 33296440 -108975004 - L1MC/D LINE L1 -4032 2689 2496 312 303 66 30 chr9 33296693 33296964 -108974480 - L1MC/D LINE L1 -4577 2144 1864 504 265 80 103 chr9 33297012 33297438 -108974006 - L1MEc LINE L1 -4832 1727 1293 1390 142 13 13 chr9 33299674 33299913 -108971531 + L1PA16 LINE L1 5923 6161 -5 2009 135 17 0 chr9 33300765 33301054 -108970390 + AluSx SINE Alu 1 294 -18 653 218 14 51 chr9 33301059 33301275 -108970169 + L1MA10 LINE L1 6116 6323 -11 287 272 10 29 chr9 33302827 33302930 -108968514 + (CTA)n Simple_repeat Simple_repeat 1 101 0 213 39 0 0 chr9 33303317 33303343 -108968101 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 1839 166 10 3 chr9 33303343 33303644 -108967800 - AluSq SINE Alu -10 303 1 2916 6 0 0 chr9 33304038 33304352 -108967092 - AluYb8 SINE Alu -4 314 1 31 0 0 0 chr9 33304363 33304394 -108967050 + AT_rich Low_complexity Low_complexity 1 31 0 2433 93 0 0 chr9 33304545 33304879 -108966565 + L1PA7 LINE L1 5821 6154 0 28 48 0 0 chr9 33305044 33305086 -108966358 + AT_rich Low_complexity Low_complexity 1 42 0 296 313 56 14 chr9 33305241 33305385 -108966059 + MIR SINE MIR 76 225 -37 253 273 131 40 chr9 33306967 33307066 -108964378 - MIR SINE MIR -71 137 30 21 36 0 0 chr9 33308008 33308036 -108963408 + AT_rich Low_complexity Low_complexity 1 28 0 2190 111 51 20 chr9 33308740 33309093 -108962351 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr9 33310826 33310847 -108960597 + AT_rich Low_complexity Low_complexity 1 21 0 243 88 0 0 chr9 33310930 33310964 -108960480 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr9 33311970 33311991 -108959453 + AT_rich Low_complexity Low_complexity 1 21 0 1523 144 22 11 chr9 33312598 33312869 -108958575 - AluSg SINE Alu -19 291 18 337 307 48 0 chr9 33312996 33313188 -108958256 + L1MC/D LINE L1 5616 5820 -301 191 86 0 29 chr9 33313586 33313621 -108957823 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2348 56 0 0 chr9 33314010 33314336 -108957108 + AluY SINE Alu 1 326 0 201 320 110 10 chr9 33315080 33315142 -108956302 - MIR3 SINE MIR -2 206 152 1006 80 0 0 chr9 33315142 33315279 -108956165 - L1PA7 LINE L1 -3 6151 6015 201 320 110 10 chr9 33315279 33315316 -108956128 - MIR3 SINE MIR -56 152 97 225 192 41 27 chr9 33316099 33316172 -108955272 + CT-rich Low_complexity Low_complexity 1 74 0 783 239 20 0 chr9 33317325 33317526 -108953918 + L1MC/D LINE L1 4945 5149 -997 510 228 110 0 chr9 33318075 33318211 -108953233 + MLT1I LTR MaLR 245 395 -14 303 335 58 40 chr9 33318746 33319024 -108952420 + L1MC/D LINE L1 5314 5596 -2212 1121 66 0 0 chr9 33319173 33319325 -108952119 + L1PA4 LINE L1 6004 6155 0 1568 184 7 19 chr9 33319449 33319759 -108951685 + AluJo SINE Alu 1 306 -6 559 333 95 41 chr9 33319773 33320342 -108951102 - L2 LINE L2 -168 3145 2551 4792 191 27 5 chr9 33320853 33322079 -108949365 - L1MA7 LINE L1 0 6291 5036 7301 35 1 15 chr9 33324111 33325271 -108946173 - L1PA5 LINE L1 0 6154 5022 2340 48 41 0 chr9 33325271 33325564 -108945880 - AluY SINE Alu -5 306 2 7301 35 1 15 chr9 33325564 33326092 -108945352 - L1PA5 LINE L1 -1132 5022 4488 11245 41 9 0 chr9 33326092 33327501 -108943943 + L1PA5 LINE L1 3081 4502 -1644 2159 112 3 0 chr9 33327613 33327939 -108943505 + AluSp SINE Alu 1 327 0 2119 119 0 3 chr9 33329311 33329621 -108941823 - AluSg SINE Alu -1 309 1 511 316 119 50 chr9 33330246 33330741 -108940703 + L2 LINE L2 2661 3204 -109 1804 235 18 35 chr9 33330741 33331255 -108940189 + MLT1D LTR MaLR 1 505 0 511 316 119 50 chr9 33331255 33331363 -108940081 + L2 LINE L2 3204 3303 -10 23 54 0 0 chr9 33331429 33331466 -108939978 + AT_rich Low_complexity Low_complexity 1 37 0 719 240 31 15 chr9 33331606 33331802 -108939642 - L1MC5 LINE L1 -61 7900 7702 306 248 20 89 chr9 33331970 33332071 -108939373 + MLT1H LTR MaLR 241 334 -215 262 210 55 47 chr9 33332105 33332211 -108939233 + MLT1H LTR MaLR 437 582 -8 387 279 0 0 chr9 33332289 33332411 -108939033 - MER69 DNA AcHobo -7 2519 2398 3213 74 0 2 chr9 33333309 33333742 -108937702 - L1PA7 LINE L1 -2 6152 5721 310 312 11 0 chr9 33334628 33334721 -108936723 - L1MC4 LINE L1 -1337 6705 6612 267 210 48 0 chr9 33334725 33334787 -108936657 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 264 232 98 0 chr9 33334787 33334869 -108936575 + L1MC4 LINE L1 6614 6703 -1339 331 276 85 56 chr9 33336635 33336954 -108934490 - L1M4 LINE L1 -1938 4208 3881 496 333 46 31 chr9 33337100 33337490 -108933954 - L1M4 LINE L1 -2422 3724 3329 504 250 0 0 chr9 33337555 33337667 -108933777 - FAM SINE Alu -37 148 37 361 265 26 0 chr9 33337942 33338059 -108933385 - L1M4 LINE L1 -3329 2817 2698 27 62 0 0 chr9 33339064 33339112 -108932332 + AT_rich Low_complexity Low_complexity 1 48 0 333 261 87 0 chr9 33340483 33340598 -108930846 - L2 LINE L2 -12 3301 3177 189 273 193 27 chr9 33340614 33340764 -108930680 + L2 LINE L2 3011 3185 -128 514 286 156 38 chr9 33342235 33342710 -108928734 - L2 LINE L2 -5 3308 2780 2263 70 23 0 chr9 33342772 33343071 -108928373 - AluY SINE Alu -5 306 1 449 336 94 62 chr9 33343739 33344430 -108927014 - L3 LINE CR1 -575 1002 290 350 367 38 22 chr9 33345306 33345619 -108925825 - L1ME4a LINE L1 -159 5962 5645 702 162 8 0 chr9 33345969 33346086 -108925358 + AluJb SINE Alu 165 282 -30 2395 60 7 0 chr9 33346221 33346522 -108924922 - AluY SINE Alu -8 303 1 25 0 0 0 chr9 33346742 33346767 -108924677 + AT_rich Low_complexity Low_complexity 1 25 0 249 188 16 31 chr9 33347363 33347427 -108924017 + GA-rich Low_complexity Low_complexity 3 65 0 305 289 133 23 chr9 33347854 33347982 -108923462 + L2 LINE L2 3171 3312 -1 5351 154 47 3 chr9 33348588 33350129 -108921315 - L1MA4 LINE L1 -6 6294 4673 239 0 32 0 chr9 33350129 33350160 -108921284 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5351 154 47 3 chr9 33350160 33350299 -108921145 - L1MA4 LINE L1 -1627 4673 4542 187 336 172 8 chr9 33350777 33350899 -108920545 + MIR SINE MIR 32 173 -89 2397 73 3 0 chr9 33350910 33351213 -108920231 - AluY SINE Alu -6 305 2 240 111 0 0 chr9 33351228 33351264 -108920180 + (A)n Simple_repeat Simple_repeat 1 36 0 1893 82 30 26 chr9 33351568 33351835 -108919609 + AluSg SINE Alu 35 302 -8 2358 192 25 40 chr9 33352084 33352611 -108918833 - MLT2B1 LTR ERVL 0 520 2 4087 125 0 28 chr9 33353243 33353897 -108917547 + L1PA15 LINE L1 5526 6161 -4 346 259 43 79 chr9 33354272 33354411 -108917033 + L1ME LINE L1 37 170 -5900 1054 263 91 53 chr9 33354413 33354978 -108916466 - MLT1E1 LTR MaLR -7 647 1 267 345 12 48 chr9 33355075 33355243 -108916201 + L1ME LINE L1 254 415 -5655 * 1369 256 17 37 chr9 33355239 33355624 -108915820 - L1M4 LINE L1 -2266 3880 3502 2238 98 7 0 chr9 33355624 33355920 -108915524 + AluSg SINE Alu 1 298 -12 1369 256 17 37 chr9 33355920 33355940 -108915504 - L1M4 LINE L1 -2644 3502 3483 533 332 96 21 chr9 33356094 33356471 -108914973 - L1MEc LINE L1 -5963 433 29 2249 328 57 21 chr9 33356836 33357851 -108913593 + L2 LINE L2 38 1089 -2225 1995 196 39 5 chr9 33357868 33358478 -108912966 - Tigger7 DNA MER2_type -1777 710 2 525 319 98 0 chr9 33358479 33358642 -108912802 + L2 LINE L2 1061 1239 -2075 2073 307 94 23 chr9 33358863 33359940 -108911504 + L2 LINE L2 1897 3043 -270 5258 109 32 2 chr9 33360227 33361037 -108910407 - L1PA7 LINE L1 -1464 4682 3849 6593 73 10 1 chr9 33361038 33362491 -108908953 + L1PA7 LINE L1 4685 6154 0 2389 80 6 3 chr9 33362167 33362493 -108908951 + L1PA7 LINE L1 5828 6154 0 23 0 0 0 chr9 33362572 33362595 -108908849 + AT_rich Low_complexity Low_complexity 1 23 0 281 375 52 2 chr9 33362867 33363022 -108908422 - MER5A DNA MER1_type 0 178 15 21 36 0 0 chr9 33363661 33363689 -108907755 + AT_rich Low_complexity Low_complexity 1 28 0 2231 106 10 0 chr9 33364529 33364832 -108906612 + AluSc SINE Alu 1 306 -3 186 43 0 0 chr9 33365854 33365877 -108905567 + (T)n Simple_repeat Simple_repeat 1 23 0 351 44 0 0 chr9 33366216 33366261 -108905183 + (TG)n Simple_repeat Simple_repeat 2 46 0 2247 97 0 7 chr9 33366515 33366813 -108904631 + AluSx SINE Alu 1 296 -16 265 365 83 0 chr9 33367966 33368111 -108903333 + L1ME LINE L1 12 168 -5902 405 173 39 167 chr9 33369590 33369746 -108901698 + LTR28 LTR ERV1 1 171 -289 2131 191 98 50 chr9 33369762 33370417 -108901027 + LTR28 LTR ERV1 121 819 -7 2085 125 0 0 chr9 33371065 33371352 -108900092 + AluSx SINE Alu 2 288 -24 799 302 56 32 chr9 33371811 33372373 -108899071 + MLT2E LTR ERVL 6 628 0 243 266 75 53 chr9 33372660 33372754 -108898690 - MER5A DNA MER1_type 0 189 94 2228 168 36 7 chr9 33373309 33373725 -108897719 - MSTA LTR MaLR 0 428 1 31 0 0 0 chr9 33373737 33373768 -108897676 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr9 33373860 33373906 -108897538 + AT_rich Low_complexity Low_complexity 1 46 0 316 346 66 15 chr9 33373994 33374130 -108897314 - MIR3 SINE MIR -64 144 2 700 207 122 0 chr9 33374599 33374787 -108896657 + MER33 DNA MER1_type 25 235 -89 1171 180 32 54 chr9 33374795 33375073 -108896371 - AluJb SINE Alu -19 293 22 25 0 0 0 chr9 33375384 33375409 -108896035 + AT_rich Low_complexity Low_complexity 1 25 0 316 239 7 7 chr9 33375475 33375613 -108895831 + (TA)n Simple_repeat Simple_repeat 2 139 0 260 224 45 0 chr9 33375824 33375891 -108895553 + Charlie1 DNA MER1_type 2687 2756 -5 22 35 0 0 chr9 33376844 33376873 -108894571 + AT_rich Low_complexity Low_complexity 1 29 0 206 258 52 62 chr9 33377351 33377448 -108893996 - L2 LINE L2 -6 3307 3212 549 111 58 14 chr9 33378080 33378374 -108893070 + (TA)n Simple_repeat Simple_repeat 1 307 0 209 156 0 62 chr9 33378375 33378439 -108893005 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 348 0 0 55 chr9 33378448 33378503 -108892941 + (TTAAA)n Simple_repeat Simple_repeat 1 52 0 871 200 10 34 chr9 33378507 33378712 -108892732 - L1MC3 LINE L1 -568 7217 7018 189 357 65 26 chr9 33379012 33379166 -108892278 + L3 LINE CR1 1374 1533 -44 871 200 10 34 chr9 33380530 33380735 -108890709 + L1MC3 LINE L1 7018 7217 -568 222 37 0 0 chr9 33380739 33380766 -108890678 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 39 0 0 0 chr9 33380766 33380805 -108890639 + AT_rich Low_complexity Low_complexity 1 39 0 395 106 81 0 chr9 33380806 33380966 -108890478 + (TA)n Simple_repeat Simple_repeat 1 173 0 328 131 65 7 chr9 33380981 33381134 -108890310 + (TA)n Simple_repeat Simple_repeat 1 162 0 586 119 48 6 chr9 33381271 33381608 -108889836 + (TA)n Simple_repeat Simple_repeat 1 351 0 1891 127 14 7 chr9 33381608 33381891 -108889553 - AluSg SINE Alu -25 285 1 314 246 0 10 chr9 33381923 33382021 -108889423 + L1MC4 LINE L1 7901 8015 -27 25 31 0 0 chr9 33382024 33382056 -108889388 + AT_rich Low_complexity Low_complexity 1 32 0 2033 125 3 13 chr9 33382651 33382955 -108888489 + AluSg SINE Alu 1 301 -9 183 42 0 0 chr9 33383241 33383265 -108888179 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 203 195 24 0 chr9 33383757 33383798 -108887646 + (TATG)n Simple_repeat Simple_repeat 2 43 0 189 300 17 17 chr9 33383967 33384027 -108887417 + MIR SINE MIR 16 75 -133 1283 315 32 99 chr9 33384051 33384978 -108886466 + L2 LINE L2 418 1282 -2032 367 258 24 32 chr9 33385072 33385196 -108886248 + L2 LINE L2 2278 2400 -914 857 301 70 55 chr9 33385239 33385694 -108885750 + L2 LINE L2 2852 3313 0 237 326 0 0 chr9 33385704 33385799 -108885645 + L1MCb LINE L1 790 884 -5161 582 220 0 0 chr9 33385799 33385917 -108885527 + L1PB4 LINE L1 6028 6145 -11 2532 140 24 7 chr9 33386040 33386461 -108884983 + MSTA LTR MaLR 1 428 0 341 294 82 27 chr9 33388192 33388338 -108883106 + MIR SINE MIR 91 244 -18 438 139 100 52 chr9 33388512 33388641 -108882803 + L1MA8 LINE L1 6070 6197 -94 405 127 14 0 chr9 33388641 33388710 -108882734 + L1MA9 LINE L1 6241 6312 0 438 139 100 52 chr9 33388710 33388730 -108882714 + L1MA8 LINE L1 6197 6215 -76 564 288 124 8 chr9 33389149 33389399 -108882045 - LTR16A1 LTR ERVL 0 457 179 479 292 116 13 chr9 33390065 33390462 -108880982 + MLT1L LTR MaLR 131 609 -6 740 288 0 41 chr9 33390493 33390712 -108880732 + MER63A DNA MER1_type 1 210 0 376 299 28 14 chr9 33390715 33390859 -108880585 - LTR67 LTR ERVL -10 547 402 2589 85 98 5 chr9 33390934 33391344 -108880100 + LTR7 LTR ERV1 1 448 -2 36 77 0 0 chr9 33391814 33391892 -108879552 + AT_rich Low_complexity Low_complexity 1 78 0 302 321 36 29 chr9 33392130 33392270 -108879174 + L1MB7 LINE L1 4067 4207 -1939 338 194 10 51 chr9 33392436 33392534 -108878910 + L1MB7 LINE L1 4178 4271 -1875 * 3101 213 31 39 chr9 33392528 33393304 -108878140 + L1MA9 LINE L1 5505 6274 -38 23 0 0 0 chr9 33393304 33393327 -108878117 + AT_rich Low_complexity Low_complexity 1 23 0 1876 250 58 31 chr9 33393361 33394104 -108877340 + L1MB7 LINE L1 4272 5034 -1112 245 95 0 81 chr9 33394172 33394246 -108877198 + (TA)n Simple_repeat Simple_repeat 1 68 0 230 288 31 19 chr9 33394192 33394301 -108877143 + (TATAG)n Simple_repeat Simple_repeat 4 117 -48 * 4061 35 17 0 chr9 33394301 33394783 -108876661 + LTR2B LTR ERV1 1 490 0 230 288 31 19 chr9 33394783 33394833 -108876611 + (TATAG)n Simple_repeat Simple_repeat 117 165 0 299 174 10 0 chr9 33394834 33394904 -108876540 - L1ME LINE L1 -485 5679 5605 2120 251 58 51 chr9 33394935 33395122 -108876322 + L1MB7 LINE L1 5088 5272 -912 408 20 0 0 chr9 33395122 33395171 -108876273 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2120 251 58 51 chr9 33395171 33395201 -108876243 + L1MB7 LINE L1 5272 5300 -884 2561 62 0 12 chr9 33395201 33395537 -108875907 - L1PA7 LINE L1 0 6154 5823 2120 251 58 51 chr9 33395537 33395601 -108875843 + L1MB7 LINE L1 5300 5362 -822 1484 219 7 3 chr9 33395601 33395902 -108875542 + AluJo SINE Alu 5 306 -6 2120 251 58 51 chr9 33395902 33396677 -108874767 + L1MB7 LINE L1 5362 6174 -10 271 407 16 41 chr9 33397320 33397563 -108873881 + L2 LINE L2 2986 3222 -50 23 0 0 0 chr9 33398652 33398675 -108872769 + AT_rich Low_complexity Low_complexity 1 23 0 379 329 33 33 chr9 33398686 33398896 -108872548 + L1M4 LINE L1 3608 3817 -2329 32 0 0 0 chr9 33399226 33399258 -108872186 + AT_rich Low_complexity Low_complexity 1 32 0 1603 126 0 69 chr9 33399888 33400165 -108871279 - AluJo SINE Alu -16 296 39 226 175 0 32 chr9 33400313 33400376 -108871068 + CT-rich Low_complexity Low_complexity 1 61 0 266 169 15 0 chr9 33400394 33400459 -108870985 + (CA)n Simple_repeat Simple_repeat 2 67 0 241 271 35 12 chr9 33401273 33401358 -108870086 - L1MC4 LINE L1 -1342 6700 6614 229 330 51 17 chr9 33401363 33401481 -108869963 + L2 LINE L2 3175 3296 -17 25 51 0 0 chr9 33401486 33401525 -108869919 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr9 33401932 33401963 -108869481 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 33402180 33402210 -108869234 + AT_rich Low_complexity Low_complexity 1 30 0 3872 169 34 14 chr9 33402282 33403047 -108868397 + L1MA10 LINE L1 5553 6332 -2 25 0 0 0 chr9 33403297 33403322 -108868122 + AT_rich Low_complexity Low_complexity 1 25 0 406 321 92 5 chr9 33403841 33404025 -108867419 + MIR SINE MIR 10 209 -53 485 254 94 50 chr9 33404233 33404434 -108867010 + L1ME1 LINE L1 5909 6082 -84 218 304 185 0 chr9 33404883 33405018 -108866426 + MIR3 SINE MIR 9 168 -40 1821 160 20 23 chr9 33405351 33405695 -108865749 + MER2 DNA MER2_type 2 344 0 1841 164 61 19 chr9 33406621 33406981 -108864463 - THE1C LTR MaLR 0 375 1 204 83 0 56 chr9 33406996 33407032 -108864412 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 756 146 49 0 chr9 33407502 33407646 -108863798 - L1MB1 LINE L1 -1 6167 6017 1692 121 51 81 chr9 33407668 33408039 -108863405 + THE1C LTR MaLR 1 360 -15 1965 136 163 8 chr9 33408527 33408896 -108862548 + MSTA LTR MaLR 3 428 0 1905 142 3 0 chr9 33409674 33409963 -108861481 - AluSx SINE Alu -22 290 1 587 261 38 16 chr9 33410182 33410392 -108861052 + L1MCa LINE L1 1 192 -5853 1026 269 93 25 chr9 33410429 33410826 -108860618 + MLT1C LTR MaLR 35 458 -9 454 254 16 8 chr9 33410827 33410949 -108860495 + L1MCa LINE L1 218 340 -5705 709 264 26 10 chr9 33411161 33411354 -108860090 + L1MCa LINE L1 359 554 -5491 2110 104 17 7 chr9 33411360 33411659 -108859785 + AluSc SINE Alu 1 302 -7 1036 256 62 39 chr9 33411770 33412203 -108859241 + L1MCa LINE L1 570 1012 -5033 541 318 29 0 chr9 33412256 33412501 -108858943 - L1MCa LINE L1 -3653 2991 2740 1083 279 16 5 chr9 33412512 33412885 -108858559 + L1MCa LINE L1 2999 3375 -3269 2370 254 93 65 chr9 33412915 33413779 -108857665 + L1MCb LINE L1 4 843 -5705 447 69 0 0 chr9 33413779 33413837 -108857607 + MER41A LTR ERV1 494 551 -3 2370 254 93 65 chr9 33413837 33414552 -108856892 + L1MCb LINE L1 843 1697 -4851 424 289 86 22 chr9 33414603 33414835 -108856609 - L1M4 LINE L1 -6292 250 4 3717 110 32 0 chr9 33414837 33415374 -108856070 - MER41A LTR ERV1 0 554 1 13491 155 78 47 chr9 33415374 33418554 -108852890 - MER41A-int LTR ERV1 -2 5944 2667 291 80 80 0 chr9 33418550 33418600 -108852844 - MER41A-int LTR ERV1 -3726 2220 2167 * 819 85 144 10 chr9 33418576 33418731 -108852713 - MER41A-int LTR ERV1 -3929 2017 1503 * 4415 161 87 30 chr9 33418718 33420314 -108851130 - MER41A-int LTR ERV1 -4171 1775 3 3614 96 36 11 chr9 33420398 33420921 -108850523 - MER41A LTR ERV1 0 554 19 354 143 0 0 chr9 33421234 33421297 -108850147 + (CA)n Simple_repeat Simple_repeat 1 63 0 1895 226 64 2 chr9 33421401 33421825 -108849619 - MER82 DNA MER2_type 0 653 204 240 310 9 9 chr9 33422077 33422193 -108849251 + Tigger2 DNA MER2_type 757 1120 -1598 3534 158 11 6 chr9 33422317 33422965 -108848479 + MER50 LTR ERV1 1 711 -23 608 231 0 0 chr9 33422967 33423084 -108848360 - MER82 DNA MER2_type -527 126 10 2084 130 0 3 chr9 33423230 33423531 -108847913 + AluSg SINE Alu 1 300 -10 22 35 0 0 chr9 33424606 33424635 -108846809 + AT_rich Low_complexity Low_complexity 1 29 0 1006 295 84 75 chr9 33424862 33425519 -108845925 - MLT2F LTR ERVL 0 663 1 1109 233 8 8 chr9 33426143 33426383 -108845061 - LTR47B LTR ERVL 0 443 204 24 0 0 0 chr9 33427409 33427433 -108844011 + AT_rich Low_complexity Low_complexity 1 24 0 420 354 57 60 chr9 33427673 33428337 -108843107 + L2 LINE L2 1632 2293 -1021 1998 151 25 25 chr9 33428409 33428596 -108842848 + L1PA16 LINE L1 5802 5991 -175 1824 151 178 6 chr9 33428596 33428961 -108842483 - MSTA LTR MaLR 0 428 1 1998 151 25 25 chr9 33428961 33429138 -108842306 + L1PA16 LINE L1 5990 6166 0 252 319 28 7 chr9 33431457 33431601 -108839843 + HAL1b LINE L1 432 578 -770 399 253 123 25 chr9 33432535 33432697 -108838747 - MIR SINE MIR -1 261 84 2436 126 6 6 chr9 33432961 33433325 -108838119 - THE1B LTR MaLR 0 364 1 29 0 0 0 chr9 33433467 33433496 -108837948 + AT_rich Low_complexity Low_complexity 1 29 0 942 294 54 11 chr9 33434721 33435000 -108836444 - MER45C DNA AcHobo -655 298 8 1301 298 108 25 chr9 33435808 33436724 -108834720 - HAL1 LINE L1 -29 2478 1487 408 278 94 13 chr9 33436756 33436990 -108834454 - HAL1 LINE L1 -1167 1340 1088 493 303 82 22 chr9 33437215 33437446 -108833998 - HAL1 LINE L1 -2242 265 21 1014 315 30 36 chr9 33437533 33438215 -108833229 + L1M2 LINE L1 9 1160 -6425 361 345 49 31 chr9 33438637 33438924 -108832520 - MLT1J LTR MaLR -204 307 16 511 299 0 8 chr9 33439674 33439808 -108831636 - MER5A DNA MER1_type -2 187 55 2037 109 22 47 chr9 33440075 33440396 -108831048 + AluSq SINE Alu 1 313 0 2137 246 15 30 chr9 33440667 33441346 -108830098 - L1M4 LINE L1 -987 5159 4491 302 346 0 0 chr9 33442176 33442283 -108829161 + L2 LINE L2 2200 2306 -1008 834 282 127 42 chr9 33442688 33443216 -108828228 - MER90 LTR ERV1 -2 573 1 2109 127 0 13 chr9 33444324 33444639 -108826805 + AluSx SINE Alu 1 311 -1 198 0 0 0 chr9 33444970 33444992 -108826452 + (TG)n Simple_repeat Simple_repeat 2 23 0 2097 158 13 16 chr9 33446483 33446857 -108824587 - THE1C LTR MaLR 0 375 3 9655 128 10 65 chr9 33446859 33448532 -108822912 - THE1C-int LTR MaLR 0 1580 1 2162 153 11 24 chr9 33448532 33448912 -108822532 - THE1C LTR MaLR 0 375 1 1811 286 58 62 chr9 33450465 33451307 -108820137 + L1M1 LINE L1 73 911 -6654 2659 166 22 2 chr9 33451317 33451817 -108819627 + L1MA6 LINE L1 5787 6296 -4 2200 105 10 0 chr9 33451913 33452208 -108819236 - AluSq SINE Alu -15 298 1 1567 198 71 40 chr9 33452523 33452902 -108818542 - MSTD LTR MaLR 0 396 6 199 54 54 0 chr9 33453057 33453094 -108818350 + (TG)n Simple_repeat Simple_repeat 1 39 0 1565 207 52 3 chr9 33454101 33454444 -108817000 + MLT1A1 LTR MaLR 4 363 -2 1615 174 68 0 chr9 33455221 33455502 -108815942 - AluJb SINE Alu -12 300 1 1407 65 107 9 chr9 33457496 33457711 -108813733 - L1MA2 LINE L1 0 6304 6069 4484 106 20 42 chr9 33457712 33458479 -108812965 - L1MA2 LINE L1 -78 6226 5477 6592 204 40 6 chr9 33458487 33459770 -108811674 - L1M1 LINE L1 -6230 1335 9 21 0 0 0 chr9 33459808 33459829 -108811615 + AT_rich Low_complexity Low_complexity 1 21 0 546 16 0 0 chr9 33460503 33460566 -108810878 + (TA)n Simple_repeat Simple_repeat 2 64 0 23 0 0 0 chr9 33461204 33461227 -108810217 + AT_rich Low_complexity Low_complexity 1 23 0 2578 107 6 3 chr9 33462720 33463083 -108808361 + THE1B LTR MaLR 1 364 0 262 322 0 0 chr9 33463609 33463696 -108807748 + L1ME LINE L1 5733 5819 -302 746 329 32 7 chr9 33463772 33464055 -108807389 - L2 LINE L2 -1249 2065 1776 31721 126 15 45 chr9 33464056 33464915 -108806529 - L1PA7 LINE L1 0 6154 5271 2349 76 0 10 chr9 33464915 33465217 -108806227 - AluY SINE Alu -12 299 1 31721 126 15 45 chr9 33465217 33468186 -108803258 - L1PA7 LINE L1 -883 5271 2586 184 29 29 29 chr9 33468186 33468220 -108803224 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 31721 126 15 45 chr9 33468220 33470720 -108800724 - L1PA7 LINE L1 -3568 2586 12 389 312 103 62 chr9 33470725 33471228 -108800216 - L2 LINE L2 -1527 1787 1264 1713 268 52 23 chr9 33471554 33472073 -108799371 + MLT1F LTR MaLR 7 540 -2 1808 190 36 30 chr9 33472330 33472693 -108798751 - MLT1A1 LTR MaLR 0 365 1 666 233 63 34 chr9 33473208 33473414 -108798030 - L2 LINE L2 0 3313 3102 181 0 0 65 chr9 33474516 33474547 -108796897 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 483 262 48 19 chr9 33475114 33475330 -108796114 - MER106B DNA MER1_type -17 1042 3 404 235 162 0 chr9 33475656 33475792 -108795652 + L1ME LINE L1 5607 5764 -398 463 234 51 56 chr9 33475915 33476131 -108795313 + L1ME3 LINE L1 5717 5931 -233 267 234 47 0 chr9 33476234 33476298 -108795146 + L1ME3 LINE L1 6088 6154 -8 * 4026 189 43 19 chr9 33476296 33477062 -108794382 + L1 LINE L1 3885 4681 -1465 243 61 0 0 chr9 33477062 33477095 -108794349 + (CA)n Simple_repeat Simple_repeat 2 34 0 4026 189 43 19 chr9 33477095 33477293 -108794151 + L1 LINE L1 4681 4873 -1273 993 236 19 75 chr9 33477292 33477363 -108794081 - L1 LINE L1 -899 5247 5174 * 1869 154 116 43 chr9 33477363 33477759 -108793685 - MSTA LTR MaLR -3 425 1 993 236 19 75 chr9 33477759 33478047 -108793397 - L1 LINE L1 -972 5174 4908 320 0 25 0 chr9 33478726 33478766 -108792678 + (TG)n Simple_repeat Simple_repeat 1 41 0 430 275 75 44 chr9 33479048 33479208 -108792236 + MIR SINE MIR 3 167 -95 1621 229 63 38 chr9 33479305 33479781 -108791663 - MLT1D LTR MaLR -17 488 1 3680 118 15 11 chr9 33479822 33480347 -108791097 - MER1A DNA MER1_type 0 527 1 298 208 142 19 chr9 33482003 33482109 -108789335 + MER53 DNA DNA 1 119 -70 338 305 96 27 chr9 33482622 33482793 -108788651 - MIR SINE MIR -67 141 15 357 299 172 0 chr9 33483145 33483279 -108788165 - MIR SINE MIR -25 237 81 226 154 115 19 chr9 33483288 33483340 -108788104 - LTR3b LTR ERVK -152 348 292 259 167 0 0 chr9 33483382 33483424 -108788020 - MER91 DNA MER1_type -98 42 1 22 35 0 0 chr9 33484976 33485005 -108786439 + AT_rich Low_complexity Low_complexity 1 29 0 2793 132 26 20 chr9 33485005 33485460 -108785984 - L1PA14 LINE L1 -3 6158 5701 473 155 0 48 chr9 33486561 33486645 -108784799 + Tigger3(Golem) DNA MER2_type 1 80 -2949 2237 76 0 20 chr9 33487809 33488111 -108783333 + AluY SINE Alu 1 296 -15 387 0 0 0 chr9 33488560 33488603 -108782841 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 669 212 118 6 chr9 33488687 33488857 -108782587 + MIR SINE MIR 63 251 -11 279 221 13 4 chr9 33489940 33490174 -108781270 + (CA)n Simple_repeat Simple_repeat 1 236 0 204 264 17 0 chr9 33490224 33490398 -108781046 + (CA)n Simple_repeat Simple_repeat 1 177 0 207 182 0 0 chr9 33490807 33490840 -108780604 + (CA)n Simple_repeat Simple_repeat 2 34 0 2584 36 0 0 chr9 33490927 33491233 -108780211 - AluY SINE Alu -5 306 1 870 183 151 0 chr9 33491701 33491891 -108779553 + MIR SINE MIR 45 262 0 626 274 93 65 chr9 33492351 33492599 -108778845 + MLT1K LTR MaLR 225 479 -109 201 260 98 116 chr9 33493375 33493548 -108777896 - MER5A DNA MER1_type 0 189 20 484 237 28 84 chr9 33493558 33493773 -108777671 - MER112 DNA MER1_type -40 220 18 183 156 0 0 chr9 33495020 33495052 -108776392 + GA-rich Low_complexity Low_complexity 3 34 0 3331 146 22 22 chr9 33495941 33495993 -108775451 - L1MB3 LINE L1 0 6183 6132 2081 112 3 3 chr9 33495993 33496288 -108775156 - AluSq SINE Alu -18 295 1 3331 146 22 22 chr9 33496288 33496824 -108774620 - L1MB3 LINE L1 -50 6133 5595 543 306 32 5 chr9 33498417 33498603 -108772841 - L2 LINE L2 -3 3310 3120 852 289 54 31 chr9 33498647 33499000 -108772444 + MLT1I LTR MaLR 35 395 -14 1824 144 3 28 chr9 33499000 33499320 -108772124 - AluJb SINE Alu 0 312 1 1492 141 147 12 chr9 33499383 33499717 -108771727 - Charlie1 DNA MER1_type -40 2721 2343 270 240 13 67 chr9 33499715 33499790 -108771654 - Charlie1 DNA MER1_type -2690 71 1 * 5180 196 65 73 chr9 33500594 33500832 -108770612 - L1MC4 LINE L1 0 8042 7803 2192 75 0 0 chr9 33500832 33501144 -108770300 - AluSc SINE Alu 0 312 1 5180 196 65 73 chr9 33501144 33502711 -108768733 - L1MC4 LINE L1 -239 7803 6172 185 346 51 0 chr9 33505046 33505124 -108766320 + MIR SINE MIR 102 183 -79 230 310 0 0 chr9 33505748 33505819 -108765625 + L2 LINE L2 3200 3270 -2 561 209 87 26 chr9 33506297 33506449 -108764995 + MIR SINE MIR 26 184 -63 1486 156 27 40 chr9 33507265 33507566 -108763878 + AluJb SINE Alu 14 310 -2 467 298 35 0 chr9 33507646 33507787 -108763657 - MIR SINE MIR -82 180 35 236 322 156 30 chr9 33508104 33508303 -108763141 + L2 LINE L2 2739 2962 -352 774 202 79 53 chr9 33508471 33508699 -108762745 + MLT1D LTR MaLR 2 235 -270 568 242 112 60 chr9 33508900 33509169 -108762275 - MER102b DNA MER1_type -1 340 58 575 266 114 13 chr9 33511597 33511943 -108759501 + MLT1J LTR MaLR 38 462 -49 504 128 13 0 chr9 33512126 33512204 -108759240 - MADE1 DNA Mariner 0 80 2 1053 39 78 0 chr9 33512212 33512341 -108759103 - MER85 DNA T2_type 0 139 1 517 278 156 9 chr9 33512341 33512553 -108758891 - MIR SINE MIR -18 244 2 390 279 41 14 chr9 33512924 33513071 -108758373 + L2 LINE L2 2913 3063 -209 430 282 61 0 chr9 33514737 33514868 -108756576 + MIR SINE MIR 8 146 -116 491 238 177 18 chr9 33515147 33515311 -108756133 - MIR SINE MIR -45 217 28 276 208 158 10 chr9 33515869 33515970 -108755474 - MIR SINE MIR -77 131 16 366 269 23 0 chr9 33516841 33516951 -108754493 + MIR SINE MIR 9 122 -86 739 303 94 21 chr9 33517377 33517579 -108753865 - L1MEc LINE L1 -4314 2082 1896 2137 87 0 7 chr9 33517579 33517877 -108753567 + L1PA14 LINE L1 5866 6161 0 739 303 94 21 chr9 33517877 33518142 -108753302 - L1MEc LINE L1 -4500 1896 1581 3815 242 37 15 chr9 33518148 33519231 -108752213 + L1M4 LINE L1 3951 5057 -1089 2217 116 0 0 chr9 33520444 33520755 -108750689 + AluSx SINE Alu 1 311 -1 225 315 31 47 chr9 33521337 33521464 -108749980 - L2 LINE L2 -220 3052 2928 244 330 143 19 chr9 33521682 33521891 -108749553 + L2 LINE L2 3035 3269 -3 308 254 91 27 chr9 33524276 33524386 -108747058 - L2 LINE L2 -2 3311 3195 379 244 0 33 chr9 33524547 33524637 -108746807 - MIR SINE MIR -101 161 75 * 571 263 82 6 chr9 33524635 33524806 -108746638 + MIR SINE MIR 78 261 -1 592 250 10 66 chr9 33525945 33526141 -108745303 + MIR SINE MIR 31 215 -47 594 262 148 61 chr9 33528971 33529482 -108741962 - LTR33A LTR ERVL -2 521 1 250 233 83 0 chr9 33529891 33529951 -108741493 + MIR SINE MIR 124 188 -74 22 0 0 0 chr9 33530231 33530253 -108741191 + AT_rich Low_complexity Low_complexity 1 22 0 561 226 0 0 chr9 33530784 33530930 -108740514 + (CA)n Simple_repeat Simple_repeat 2 147 0 1497 227 46 49 chr9 33531346 33531777 -108739667 + MER63B DNA MER1_type 7 436 0 212 265 154 26 chr9 33531934 33532051 -108739393 - MIR3 SINE MIR -53 155 75 184 171 122 0 chr9 33533732 33533773 -108737671 - L2 LINE L2 -17 3255 3210 697 298 41 5 chr9 33534217 33534435 -108737009 + MIR SINE MIR 20 245 -17 221 297 0 40 chr9 33536050 33536124 -108735320 - MIR SINE MIR -111 151 81 227 250 144 94 chr9 33537633 33537793 -108733651 + MIR SINE MIR 16 183 -79 1204 222 89 9 chr9 33538320 33538635 -108732809 + L1ME3A LINE L1 5826 6165 -5 536 185 0 0 chr9 33538702 33538794 -108732650 + AluJ/FLAM SINE Alu 2 93 -219 488 152 209 29 chr9 33539134 33539239 -108732205 + MER20 DNA MER1_type 2 125 -94 253 296 12 0 chr9 33539246 33539327 -108732117 + L2 LINE L2 3227 3308 -5 420 339 24 6 chr9 33540241 33540406 -108731038 + MER5A DNA MER1_type 3 170 -19 269 183 17 0 chr9 33540406 33540466 -108730978 + (CATA)n Simple_repeat Simple_repeat 4 64 0 3398 168 23 26 chr9 33540469 33540573 -108730871 - L1MB4 LINE L1 -17 6163 6060 252 0 0 0 chr9 33540573 33540601 -108730843 + (TG)n Simple_repeat Simple_repeat 1 28 0 1962 112 4 0 chr9 33540601 33540879 -108730565 - AluSx SINE Alu -33 279 1 3398 168 23 26 chr9 33540879 33541463 -108729981 - L1MB4 LINE L1 -118 6062 5476 1086 170 0 21 chr9 33541470 33541669 -108729775 - MER6A DNA MER2_type -539 66 -10 204 216 0 0 chr9 33541702 33541739 -108729705 + MER5A DNA MER1_type 148 184 -5 215 359 146 0 chr9 33542957 33543060 -108728384 - MIR SINE MIR -2 260 143 261 167 0 37 chr9 33543083 33543137 -108728307 - LTR33A LTR ERVL -25 498 447 234 241 37 0 chr9 33543412 33543466 -108727978 - LTR67 LTR ERVL -387 170 115 281 270 144 9 chr9 33543522 33543633 -108727811 - MIR SINE MIR -117 145 20 514 278 68 17 chr9 33544025 33544201 -108727243 - MIR SINE MIR -60 202 18 273 383 57 0 chr9 33544516 33544657 -108726787 - MIR3 SINE MIR -25 183 35 489 242 23 15 chr9 33544797 33544929 -108726515 + L1ME3A LINE L1 6038 6170 0 1251 241 73 48 chr9 33545177 33545616 -108725828 + MLT1J2 LTR MaLR 1 450 0 2022 112 61 0 chr9 33546616 33546910 -108724534 - AluSq SINE Alu -1 312 1 552 196 19 25 chr9 33547809 33547967 -108723477 + MER96B DNA MER1_type? 7 163 -254 3999 171 186 88 chr9 33547982 33548723 -108722721 + L1MC3 LINE L1 6291 6958 -827 232 303 11 45 chr9 33548723 33548812 -108722632 + MLT1F1 LTR MaLR 37 122 -445 3999 171 186 88 chr9 33548812 33549344 -108722100 + L1MC3 LINE L1 6958 7785 0 24 67 0 0 chr9 33549411 33549456 -108721988 + AT_rich Low_complexity Low_complexity 1 45 0 513 302 88 55 chr9 33549507 33549871 -108721573 + L1MCa LINE L1 1970 2351 -4081 1957 254 91 18 chr9 33549907 33550806 -108720638 + L1MCa LINE L1 2425 3389 -3037 1451 317 70 2 chr9 33551702 33552160 -108719284 + LTR16C LTR ERVL 1 489 -2 648 315 24 58 chr9 33552163 33552645 -108718799 + L1MEc LINE L1 1102 1564 -4832 790 173 8 0 chr9 33552645 33552772 -108718672 + FLAM_A SINE Alu 1 128 -5 648 315 24 58 chr9 33552772 33552842 -108718602 + L1MEc LINE L1 1564 1635 -4761 279 314 16 8 chr9 33552867 33552988 -108718456 + L1ME LINE L1 42 163 -5907 747 260 85 60 chr9 33553054 33553666 -108717778 + L1ME LINE L1 463 1089 -4981 6225 231 47 41 chr9 33553672 33554133 -108717311 + L1ME LINE L1 2945 3402 -2696 1279 129 17 21 chr9 33554133 33554373 -108717071 + L1MB3 LINE L1 5944 6182 -1 6225 231 47 41 chr9 33554373 33556095 -108715349 + L1ME LINE L1 3402 5218 -880 6712 52 31 6 chr9 33556095 33557174 -108714270 + L1PA6 LINE L1 5054 6154 0 6225 231 47 41 chr9 33557174 33557495 -108713949 + L1ME LINE L1 5218 5536 -562 234 74 9 259 chr9 33557514 33557622 -108713822 - L1PB3 LINE L1 -1 6153 6073 3723 53 40 4 chr9 33557724 33558198 -108713246 + L1PA6 LINE L1 5664 6154 0 649 207 29 8 chr9 33558199 33558509 -108712935 + L1ME2 LINE L1 5196 5591 -573 32 0 0 0 chr9 33558510 33558542 -108712902 + AT_rich Low_complexity Low_complexity 1 32 0 1124 112 0 129 chr9 33558542 33558775 -108712669 - L1PB3 LINE L1 -1 6153 5951 * 2087 244 32 14 chr9 33558772 33559338 -108712106 + L1ME2 LINE L1 5579 6154 -10 310 197 88 22 chr9 33559367 33559504 -108711940 + L1MC5 LINE L1 7770 7915 -46 533 260 62 40 chr9 33559520 33560036 -108711408 + L1ME3A LINE L1 1630 2260 -3955 2198 108 3 0 chr9 33560036 33560342 -108711102 + AluSq SINE Alu 1 307 -6 533 260 62 40 chr9 33560342 33560663 -108710781 + L1ME3A LINE L1 2260 2572 -3643 1551 287 86 13 chr9 33560733 33561568 -108709876 + L1ME3A LINE L1 2539 3434 -2781 846 169 22 0 chr9 33561580 33561716 -108709728 + MLT1A2 LTR MaLR 236 374 0 282 243 175 0 chr9 33561716 33561819 -108709625 + L1M4 LINE L1 4812 4932 -1214 284 178 68 27 chr9 33561910 33561983 -108709461 - L1ME3 LINE L1 0 6162 6087 306 253 126 0 chr9 33561983 33562070 -108709374 - L1ME2 LINE L1 -132 6032 5935 271 273 18 36 chr9 33562741 33562851 -108708593 + L1M4 LINE L1 5075 5182 -964 1881 198 53 116 chr9 33562855 33563236 -108708208 + L1ME3A LINE L1 4539 4943 -1272 10415 40 11 51 chr9 33563236 33564669 -108706775 - SVA Other Other -9 1377 2 1881 198 53 116 chr9 33564669 33564917 -108706527 + L1ME3A LINE L1 4943 5117 -1098 1649 164 9 31 chr9 33564917 33565235 -108706209 + AluSx SINE Alu 1 311 -1 1881 198 53 116 chr9 33565235 33565346 -108706098 + L1ME3A LINE L1 5117 5233 -982 1603 214 26 24 chr9 33565349 33565728 -108705716 + L1ME3A LINE L1 5860 6239 0 585 253 65 23 chr9 33565727 33566079 -108705365 + L1M4 LINE L1 3095 3461 -2685 * 3477 258 60 24 chr9 33566069 33567485 -108703959 - L1MC4a LINE L1 -1190 6618 5305 1959 151 3 13 chr9 33567501 33567813 -108703631 - AluJb SINE Alu -3 309 1 1502 176 24 110 chr9 33567829 33568238 -108703206 + MLT1A2 LTR MaLR 1 374 0 2548 53 0 3 chr9 33568332 33568634 -108702810 - AluY SINE Alu -10 301 1 2072 156 36 3 chr9 33568650 33569040 -108702404 - Charlie1a DNA MER1_type -410 1045 643 1288 178 32 36 chr9 33569046 33569103 -108702341 - Charlie1a DNA MER1_type -2470 291 235 351 0 0 0 chr9 33569103 33569142 -108702302 + (TG)n Simple_repeat Simple_repeat 1 39 0 1288 178 32 36 chr9 33569142 33569365 -108702079 - Charlie1a DNA MER1_type -2526 235 12 1251 153 5 0 chr9 33569587 33569776 -108701668 - AluSx SINE Alu -122 190 1 2151 200 44 38 chr9 33569889 33570394 -108701050 + Charlie1a DNA MER1_type 1 508 -947 1037 157 100 32 chr9 33570394 33570643 -108700801 + ORSL DNA AcHobo 1 266 -9 253 231 0 31 chr9 33570620 33570685 -108700759 + Charlie1a DNA MER1_type 475 537 -918 * 551 126 219 8 chr9 33570714 33570833 -108700611 - ORSL DNA AcHobo -130 145 2 4195 174 27 13 chr9 33570840 33571733 -108699711 + Charlie1a DNA MER1_type 539 1443 -12 1131 311 85 15 chr9 33572452 33572912 -108698532 + L2 LINE L2 2822 3313 0 190 167 62 0 chr9 33573068 33573116 -108698328 - MIR SINE MIR -74 188 138 23 78 0 0 chr9 33573869 33573920 -108697524 + GC_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr9 33573993 33574036 -108697408 + GC_rich Low_complexity Low_complexity 1 43 0 310 326 171 29 chr9 33576387 33576731 -108694713 - L2 LINE L2 -6 3266 2874 220 292 0 15 chr9 33578368 33578433 -108693011 - L2 LINE L2 -25 3247 3184 1045 234 194 14 chr9 33579798 33580165 -108691279 + MLT1J2 LTR MaLR 1 433 -17 679 323 10 0 chr9 33580282 33580480 -108690964 - MIR SINE MIR -55 207 8 194 301 116 20 chr9 33581072 33581218 -108690226 - L2 LINE L2 -270 3002 2843 214 331 32 24 chr9 33581544 33581668 -108689776 - L2 LINE L2 -976 2338 2214 1446 258 129 83 chr9 33584371 33585410 -108686034 - L1MC4a LINE L1 -1 7807 6721 256 328 76 15 chr9 33585472 33585603 -108685841 - MIR3 SINE MIR -52 156 18 310 330 37 16 chr9 33586080 33586249 -108685195 + MIR SINE MIR 34 205 -57 28 29 0 0 chr9 33586725 33586760 -108684684 + AT_rich Low_complexity Low_complexity 1 35 0 533 245 67 97 chr9 33587237 33587535 -108683909 - L2 LINE L2 -18 3254 2966 557 266 162 9 chr9 33588286 33588508 -108682936 + MIR SINE MIR 5 260 -2 570 298 77 10 chr9 33639158 33639467 -108631977 - MLT1J2 LTR MaLR -83 367 29 232 317 89 16 chr9 33640291 33640414 -108631030 + L2 LINE L2 3141 3272 0 216 171 0 0 chr9 33640446 33640481 -108630963 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 229 0 0 chr9 33640962 33641023 -108630421 - MER4-int LTR ERV1 -5443 1155 1095 705 241 128 108 chr9 33641735 33642142 -108629302 + MLT1E3 LTR MaLR 1 415 -209 258 274 105 24 chr9 33643831 33643955 -108627489 - MER117 DNA MER1_type -46 151 18 253 359 39 8 chr9 33643979 33644107 -108627337 - MIR SINE MIR -110 152 21 721 293 26 4 chr9 33644183 33644412 -108627032 + MIR SINE MIR 21 254 -8 302 248 146 38 chr9 33645450 33645556 -108625888 - MIR SINE MIR -63 145 38 996 184 110 18 chr9 33645602 33645820 -108625624 + MLT1E3 LTR MaLR 1 238 -386 231 206 27 14 chr9 33646126 33646199 -108625245 + (TA)n Simple_repeat Simple_repeat 2 75 0 1191 140 95 9 chr9 33648468 33648689 -108622755 + L1PA16 LINE L1 5926 6165 -1 279 331 40 0 chr9 33649165 33649289 -108622155 - L1MC/D LINE L1 -2226 5582 5454 49 43 0 0 chr9 33651222 33651292 -108620152 + AT_rich Low_complexity Low_complexity 1 70 0 231 204 0 0 chr9 33651438 33651492 -108619952 + (CA)n Simple_repeat Simple_repeat 2 55 0 646 271 23 0 chr9 33652516 33652693 -108618751 + L1M4 LINE L1 1480 1660 -4724 * 1741 252 36 2 chr9 33652692 33653161 -108618283 + L1M4 LINE L1 3970 4454 -1928 453 328 118 41 chr9 33654338 33654426 -108617018 - L3 LINE CR1 -872 705 625 2316 47 30 14 chr9 33654426 33654722 -108616722 + AluY SINE Alu 1 301 -10 453 328 118 41 chr9 33654722 33654971 -108616473 - L3 LINE CR1 -952 625 342 952 266 21 62 chr9 33656276 33656614 -108614830 - L2 LINE L2 -965 2349 2026 399 379 21 7 chr9 33656695 33656977 -108614467 - L1MEc LINE L1 -6077 319 34 187 143 0 0 chr9 33657581 33657609 -108613835 - L2 LINE L2 -17 3296 3269 2786 195 62 114 chr9 33658375 33659328 -108612116 - Charlie1a DNA MER1_type -1328 1433 547 8212 52 1 0 chr9 33659328 33660293 -108611151 - LTR5 LTR ERVK -3 966 1 2786 195 62 114 chr9 33660293 33660481 -108610963 - Charlie1a DNA MER1_type -2214 547 351 723 262 0 6 chr9 33660470 33660634 -108610810 - Charlie1a DNA MER1_type -1292 163 1 * 259 353 22 15 chr9 33661683 33661819 -108609625 + MIR SINE MIR 112 248 -14 181 365 14 0 chr9 33661949 33662023 -108609421 + L3 LINE CR1 1331 1405 -172 25 51 0 0 chr9 33662187 33662226 -108609218 + AT_rich Low_complexity Low_complexity 1 39 0 184 239 34 68 chr9 33663236 33663324 -108608120 + MIR SINE MIR 58 142 -66 414 290 82 29 chr9 33663608 33663853 -108607591 - MIR SINE MIR -1 261 4 225 355 15 65 chr9 33664045 33664245 -108607199 - MIR3 SINE MIR -12 196 7 22 0 0 0 chr9 33665475 33665497 -108605947 + AT_rich Low_complexity Low_complexity 1 22 0 711 308 65 12 chr9 33665911 33666291 -108605153 - MLT1H LTR MaLR -3 546 14 236 277 141 22 chr9 33666332 33666516 -108604928 + L1MC/D LINE L1 5597 5802 -2006 28 0 0 0 chr9 33666811 33666839 -108604605 + AT_rich Low_complexity Low_complexity 1 28 0 276 247 55 75 chr9 33666944 33667090 -108604354 - L2 LINE L2 -211 3061 2919 221 333 14 28 chr9 33667607 33667679 -108603765 + L2 LINE L2 427 497 -2817 623 216 15 0 chr9 33670555 33670689 -108600755 + L1ME LINE L1 5608 5743 -423 1349 73 21 0 chr9 33670711 33670902 -108600542 - L1PA7 LINE L1 0 6154 5960 1588 182 7 25 chr9 33671647 33671933 -108599511 - AluJo SINE Alu -31 281 1 305 308 62 0 chr9 33672162 33672308 -108599136 - LTR33 LTR ERVL 0 521 367 326 318 130 27 chr9 33672857 33673118 -108598326 - LTR33 LTR ERVL -228 293 6 278 206 103 37 chr9 33673594 33673701 -108597743 - L1ME3 LINE L1 -7 6155 6042 1328 245 164 19 chr9 33673918 33674436 -108597008 + L1MC4 LINE L1 7079 7521 -521 1972 123 13 20 chr9 33674436 33674737 -108596707 - AluSp SINE Alu -12 301 3 1328 245 164 19 chr9 33674737 33674989 -108596455 + L1MC4 LINE L1 7521 8042 0 1556 162 13 6 chr9 33675503 33675854 -108595590 - L1MB1 LINE L1 -640 5528 5173 3716 157 7 13 chr9 33675858 33676534 -108594910 + L1MB1 LINE L1 5497 6168 0 878 271 75 102 chr9 33676598 33677156 -108594288 + MLT1H1 LTR MaLR 5 547 -8 2010 226 51 40 chr9 33677378 33677983 -108593461 - LTR9 LTR ERV1 0 612 1 336 276 112 10 chr9 33678189 33678287 -108593157 + L2 LINE L2 3149 3256 -16 190 227 27 13 chr9 33678297 33678372 -108593072 + GA-rich Low_complexity Low_complexity 4 79 0 470 260 160 13 chr9 33678427 33678577 -108592867 + MER5B DNA MER1_type 1 172 -6 329 362 22 14 chr9 33679391 33679529 -108591915 + L2 LINE L2 3134 3272 0 227 331 90 7 chr9 33680110 33680255 -108591189 - MIR SINE MIR -3 259 103 575 227 88 42 chr9 33682712 33682950 -108588494 - L1M3 LINE L1 -1460 4686 4438 12667 150 32 22 chr9 33682951 33684414 -108587030 - L1PA11 LINE L1 -4 6170 4723 1864 172 33 28 chr9 33684414 33684774 -108586670 - THE1B LTR MaLR -2 362 1 12667 150 32 22 chr9 33684774 33686498 -108584946 - L1PA11 LINE L1 -1451 4723 2935 1813 134 7 0 chr9 33686498 33686774 -108584670 - AluSx SINE Alu 0 312 35 12667 150 32 22 chr9 33686774 33686808 -108584636 - L1PA11 LINE L1 -3239 2935 2903 218 394 170 0 chr9 33687365 33687530 -108583914 + L2 LINE L2 2439 2631 -683 335 337 23 23 chr9 33688669 33688841 -108582603 - L1ME LINE L1 -407 5714 5543 438 139 57 16 chr9 33689656 33689778 -108581666 + CT-rich Low_complexity Low_complexity 4 130 0 541 206 38 46 chr9 33689831 33689962 -108581482 - MER58A DNA MER1_type -15 209 80 354 241 60 90 chr9 33690308 33690441 -108581003 + L1MC4 LINE L1 6575 6703 -1339 295 264 42 0 chr9 33692296 33692368 -108579076 + MIR SINE MIR 110 184 -78 244 235 0 0 chr9 33692460 33692511 -108578933 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 259 226 0 43 chr9 33692512 33692605 -108578839 + L1MC4 LINE L1 6614 6702 -1340 * 314 276 0 19 chr9 33692566 33692671 -108578773 - L1MC4 LINE L1 -1339 6703 6601 577 280 84 3 chr9 33692999 33693342 -108578102 + L1ME3A LINE L1 4967 5337 -809 * 1286 222 85 95 chr9 33693336 33693903 -108577541 + L1ME3A LINE L1 5602 6162 -8 365 295 40 27 chr9 33693931 33694080 -108577364 + L1MEd LINE L1 2 152 -5967 2234 110 10 0 chr9 33694293 33694602 -108576842 + AluSx SINE Alu 1 312 0 320 328 81 11 chr9 33695116 33695290 -108576154 + L1MC4a LINE L1 5766 5951 -1857 374 231 165 44 chr9 33696995 33697177 -108574267 + MLT1J2 LTR MaLR 2 205 -245 235 271 115 66 chr9 33697210 33697332 -108574112 + MLT1J2 LTR MaLR 279 406 -44 661 286 17 17 chr9 33697367 33697542 -108573902 - MER5A DNA MER1_type 0 189 15 352 237 30 69 chr9 33698249 33698380 -108573064 + MIR SINE MIR 9 134 -128 600 211 18 0 chr9 33698502 33698611 -108572833 + MER58A DNA MER1_type 5 115 0 350 148 0 0 chr9 33698618 33698672 -108572772 + MER58A DNA MER1_type 171 224 0 1666 178 5 98 chr9 33699226 33699625 -108571819 - MLT1A1 LTR MaLR -3 362 1 660 259 64 70 chr9 33699762 33700105 -108571339 - MLT1I LTR MaLR 0 409 69 391 260 58 0 chr9 33700303 33700407 -108571037 - MER5B DNA MER1_type 0 178 69 713 247 14 115 chr9 33701852 33702200 -108569244 - MER46C DNA MER2_type -24 314 2 253 167 15 30 chr9 33702907 33702973 -108568471 - L1MEc LINE L1 -5214 1182 1118 1105 288 32 14 chr9 33703028 33703399 -108568045 + L1ME1 LINE L1 34 411 -5985 1244 244 83 47 chr9 33703453 33704134 -108567310 - L1MEc LINE L1 -4785 1430 775 679 249 71 58 chr9 33704138 33704756 -108566688 + L1ME1 LINE L1 2991 6230 -5 388 300 120 7 chr9 33705291 33705441 -108566003 + MIR SINE MIR 80 246 -16 1091 221 108 40 chr9 33705850 33706221 -108565223 + MSTD LTR MaLR 1 396 0 193 297 40 14 chr9 33706442 33706516 -108564928 - MIR SINE MIR -62 146 71 238 253 11 11 chr9 33706981 33707076 -108564368 + GA-rich Low_complexity Low_complexity 2 96 0 667 288 56 14 chr9 33707581 33707796 -108563648 - MIR SINE MIR -30 232 9 436 343 34 0 chr9 33708602 33708777 -108562667 - MIR3 SINE MIR -9 199 19 23 33 0 0 chr9 33709181 33709211 -108562233 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr9 33709503 33709525 -108561919 + AT_rich Low_complexity Low_complexity 1 22 0 1613 82 43 0 chr9 33710153 33710385 -108561059 - L1PA11 LINE L1 0 6174 5933 925 189 12 0 chr9 33710390 33710554 -108560890 - MER2 DNA MER2_type -173 172 7 6609 71 3 9 chr9 33710990 33712100 -108559344 + L1PA7 LINE L1 5048 6152 -2 486 290 91 60 chr9 33712441 33712838 -108558606 + MLT1L LTR MaLR 200 608 -7 257 100 100 0 chr9 33713141 33713191 -108558253 - MLT2A1 LTR ERVL 0 453 399 208 183 0 28 chr9 33713289 33713360 -108558084 + (TA)n Simple_repeat Simple_repeat 1 69 0 2695 86 21 10 chr9 33713376 33713759 -108557685 - MLT2A1 LTR ERVL -57 387 1 359 312 108 31 chr9 33714322 33714401 -108557043 - L1MC/D LINE L1 -867 5445 5374 2249 81 0 29 chr9 33714401 33714708 -108556736 - AluY SINE Alu -13 298 1 359 312 108 31 chr9 33714708 33715151 -108556293 - L1MC/D LINE L1 -938 5374 5254 29 28 0 0 chr9 33715160 33715196 -108556248 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 33715761 33715783 -108555661 + AT_rich Low_complexity Low_complexity 1 22 0 921 187 73 4 chr9 33716807 33717146 -108554298 + MSTD LTR MaLR 1 396 0 278 322 85 17 chr9 33718885 33719062 -108552382 + MIR SINE MIR 18 206 -56 29 70 0 0 chr9 33720764 33720821 -108550623 + AT_rich Low_complexity Low_complexity 1 57 0 231 321 27 27 chr9 33720944 33721056 -108550388 + L2 LINE L2 688 799 -2515 192 364 59 0 chr9 33721105 33721223 -108550221 + L2 LINE L2 962 1086 -2228 2088 224 25 7 chr9 33721262 33721695 -108549749 - MER74C LTR ERVL 0 460 20 5447 172 28 17 chr9 33721697 33723025 -108548419 + L1MA5 LINE L1 4963 6300 0 229 357 0 0 chr9 33723082 33723152 -108548292 + L2 LINE L2 1127 1196 -2118 1058 305 144 6 chr9 33723199 33723720 -108547724 + L2 LINE L2 1721 2313 -1001 263 235 106 12 chr9 33723725 33723810 -108547634 + MLT1L LTR MaLR 1 93 -522 1466 299 17 10 chr9 33724335 33724743 -108546701 - LTR16C LTR ERVL -7 484 74 254 361 87 11 chr9 33725040 33725223 -108546221 - ERVL LTR ERVL -601 5163 4967 377 353 52 46 chr9 33725230 33725706 -108545738 - ERVL LTR ERVL -832 4822 4344 264 286 8 88 chr9 33726316 33726445 -108544999 - MIR SINE MIR -68 140 38 1224 246 34 82 chr9 33727789 33728313 -108543131 + LTR53 LTR ERVL 21 519 0 334 262 107 30 chr9 33728837 33729005 -108542439 - L1M4 LINE L1 -1929 4217 4037 299 295 105 21 chr9 33729728 33729823 -108541621 + L2 LINE L2 3197 3299 -14 1517 166 232 27 chr9 33730909 33731276 -108540168 + MLT2B1 LTR ERVL 1 442 -78 231 125 0 0 chr9 33731307 33731347 -108540097 + (TC)n Simple_repeat Simple_repeat 2 41 0 204 275 66 66 chr9 33731576 33731667 -108539777 - L3 LINE CR1 -2 1575 1485 26 64 0 0 chr9 33731972 33732019 -108539425 + AT_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr9 33732128 33732162 -108539282 + AT_rich Low_complexity Low_complexity 1 34 0 1595 184 86 89 chr9 33732287 33732836 -108538608 + MLT2B3 LTR ERVL 1 547 -7 23 33 0 0 chr9 33733072 33733102 -108538342 + AT_rich Low_complexity Low_complexity 1 30 0 1351 243 0 0 chr9 33733113 33733393 -108538051 - AluJo SINE Alu -31 281 2 227 242 33 33 chr9 33733479 33733570 -108537874 + L1ME1 LINE L1 4596 4686 -1460 6298 97 40 9 chr9 33733571 33734667 -108536777 - L1PA13 LINE L1 -2 6161 5047 3405 5 8 0 chr9 33734805 33735195 -108536249 - L1PA4 LINE L1 -4 6151 5759 4277 27 2 0 chr9 33735195 33735804 -108535640 + L1PA4 LINE L1 5153 5762 -393 286 354 67 14 chr9 33736069 33736292 -108535152 + L1ME3A LINE L1 5649 5883 -287 2768 250 41 14 chr9 33736786 33737587 -108533857 + L1ME1 LINE L1 5338 6160 -6 183 80 0 0 chr9 33738071 33738096 -108533348 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 231 257 83 55 chr9 33738133 33738242 -108533202 - MIR SINE MIR -98 164 53 208 233 83 0 chr9 33738282 33738342 -108533102 + MIR3 SINE MIR 102 166 -42 242 270 32 0 chr9 33740018 33740081 -108531363 + MLT1H LTR MaLR 23 87 -462 768 333 74 17 chr9 33740937 33741515 -108529929 - L2 LINE L2 -42 3271 2660 378 262 124 64 chr9 33741863 33742065 -108529379 - LTR33A LTR ERVL -345 178 1 1736 296 23 54 chr9 33742338 33743077 -108528367 - L2 LINE L2 -688 2626 1911 1402 293 80 43 chr9 33743082 33743846 -108527598 - HERV16 LTR ERVL -4192 804 13 696 349 31 14 chr9 33743897 33744252 -108527192 - LTR16A LTR ERVL -55 395 35 384 348 61 11 chr9 33745091 33745272 -108526172 - MIR3 SINE MIR -6 202 13 256 398 42 8 chr9 33746538 33746656 -108524788 - L2 LINE L2 -8 3264 3143 22 35 0 0 chr9 33746996 33747025 -108524419 + AT_rich Low_complexity Low_complexity 1 29 0 232 238 25 12 chr9 33747071 33747151 -108524293 - L1ME4a LINE L1 -63 6058 5978 181 152 22 87 chr9 33747155 33747201 -108524243 - L2 LINE L2 0 3313 3271 1541 164 66 14 chr9 33747628 33747915 -108523529 + AluSx SINE Alu 1 302 -10 525 325 13 45 chr9 33748156 33748313 -108523131 + L2 LINE L2 3100 3251 -21 1020 139 36 6 chr9 33749676 33749842 -108521602 + MLT2B1 LTR ERVL 3 173 -347 631 263 78 0 chr9 33749860 33750039 -108521405 + MLT2B2 LTR ERVL 323 515 0 2124 133 36 28 chr9 33750791 33751152 -108520292 - THE1B LTR MaLR 0 364 1 2258 64 10 16 chr9 33751356 33751668 -108519776 + AluY SINE Alu 2 311 0 301 239 69 94 chr9 33752090 33752249 -108519195 - HAL1b LINE L1 -1125 223 69 21 0 0 0 chr9 33753556 33753577 -108517867 + AT_rich Low_complexity Low_complexity 1 21 0 632 104 10 0 chr9 33754202 33754298 -108517146 - L1MB5 LINE L1 -10 6164 6068 435 134 0 0 chr9 33754354 33754421 -108517023 - MADE1 DNA Mariner -12 68 2 1115 211 160 56 chr9 33754870 33754949 -108516495 - Charlie2 DNA MER1_type -309 2553 2484 2302 92 3 16 chr9 33754949 33755264 -108516180 + AluSp SINE Alu 3 313 0 1115 211 160 56 chr9 33755264 33755790 -108515654 - Charlie2 DNA MER1_type -378 2484 1885 565 279 17 6 chr9 33755794 33755966 -108515478 - L1M4 LINE L1 -1211 5577 5404 * 3625 193 31 34 chr9 33755956 33756882 -108514562 - L1M4 LINE L1 -2086 4702 3779 1384 312 53 37 chr9 33757265 33757884 -108513560 - L1M4 LINE L1 -6148 641 13 3909 234 56 28 chr9 33757900 33758300 -108513144 - L1M4 LINE L1 -1956 4688 4301 1460 194 67 0 chr9 33758300 33758416 -108513028 + AluJo SINE Alu 1 108 -204 189 0 0 0 chr9 33758416 33758437 -108513007 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1460 194 67 0 chr9 33758437 33758603 -108512841 + AluJo SINE Alu 108 302 -10 3909 234 56 28 chr9 33758603 33759584 -108511860 - L1M4 LINE L1 -2343 4301 3268 1872 249 83 42 chr9 33759581 33760220 -108511224 - L1M4 LINE L1 -5870 672 8 * 273 29 0 0 chr9 33760867 33760901 -108510543 + (GA)n Simple_repeat Simple_repeat 1 34 0 367 366 60 48 chr9 33761426 33761844 -108509600 + L2 LINE L2 2552 2974 -340 223 338 52 0 chr9 33762003 33762080 -108509364 + L2 LINE L2 3184 3264 -49 213 244 67 22 chr9 33762175 33762265 -108509179 - MIR SINE MIR -50 212 119 220 186 0 0 chr9 33762780 33762823 -108508621 + (TG)n Simple_repeat Simple_repeat 2 44 0 481 250 27 20 chr9 33764021 33764169 -108507275 - L1ME2 LINE L1 -1922 4224 4076 289 294 33 28 chr9 33764172 33764352 -108507092 + L1ME2 LINE L1 4218 4398 -1748 1626 200 20 0 chr9 33764354 33764649 -108506795 + AluJo SINE Alu 1 301 -11 453 297 62 39 chr9 33764694 33765031 -108506413 + L1ME2 LINE L1 5786 6130 -34 1164 172 38 0 chr9 33765175 33765384 -108506060 + AluJb SINE Alu 1 217 -95 22 0 0 0 chr9 33766259 33766281 -108505163 + AT_rich Low_complexity Low_complexity 1 22 0 208 308 56 56 chr9 33766320 33766427 -108505017 + L2 LINE L2 3156 3262 -10 2547 55 0 3 chr9 33766729 33767037 -108504407 + AluY SINE Alu 1 307 -4 29 28 0 0 chr9 33768349 33768385 -108503059 + AT_rich Low_complexity Low_complexity 1 36 0 2051 210 115 0 chr9 33770260 33770713 -108500731 - MLT1D LTR MaLR 0 505 1 289 343 0 28 chr9 33770851 33770959 -108500485 + MIR SINE MIR 16 120 -88 641 235 127 117 chr9 33771736 33772256 -108499188 + MLT1H LTR MaLR 9 533 -16 1944 217 103 110 chr9 33772399 33773147 -108498297 + MER21B LTR ERV1 10 752 -111 310 326 8 0 chr9 33773676 33773805 -108497639 + (TA)n Simple_repeat Simple_repeat 2 131 0 461 214 22 0 chr9 33774016 33774105 -108497339 - MER76 LTR ERV 0 688 598 3884 178 42 30 chr9 33774107 33774568 -108496876 + L1MA9 LINE L1 4249 4703 -1443 2036 39 24 0 chr9 33774568 33774821 -108496623 + L1PA4 LINE L1 5896 6155 0 3884 178 42 30 chr9 33774821 33775262 -108496182 + L1MA9 LINE L1 4703 5162 -984 1032 71 0 8 chr9 33775264 33775391 -108496053 + AluSg SINE Alu 3 128 -182 2895 147 47 56 chr9 33775393 33776005 -108495439 + L1MA9 LINE L1 5632 6238 -74 261 0 0 0 chr9 33776022 33776051 -108495393 + (TAA)n Simple_repeat Simple_repeat 3 31 0 390 238 24 95 chr9 33776089 33776257 -108495187 - MER76 LTR ERV -69 619 464 7575 27 7 0 chr9 33776288 33777794 -108493650 - L1PA3 LINE L1 -1 6154 4642 1875 139 9 54 chr9 33778813 33779129 -108492315 - AluSq SINE Alu -11 302 1 357 186 29 0 chr9 33779397 33779467 -108491977 + MLT1L LTR MaLR 140 211 -404 319 384 0 23 chr9 33779596 33779768 -108491676 + ERVL LTR ERVL 2425 2592 -3172 282 301 142 61 chr9 33780089 33780434 -108491010 + MLT1J2 LTR MaLR 73 445 -5 224 293 13 13 chr9 33781141 33781216 -108490228 + L2 LINE L2 2662 2736 -578 399 271 107 31 chr9 33782802 33783027 -108488417 - LTR33A LTR ERVL -56 467 226 255 326 131 49 chr9 33783147 33783392 -108488052 - LTR33A LTR ERVL -258 265 1 11535 190 50 34 chr9 33784304 33788503 -108482941 - L1MA4A LINE L1 -3 7362 3065 2447 167 17 13 chr9 33788503 33788964 -108482480 - MER4C LTR ERV1 -2 463 1 11535 190 50 34 chr9 33788964 33789894 -108481550 - L1MA4A LINE L1 -4300 3065 2152 2420 118 11 6 chr9 33789895 33790243 -108481201 - THE1B LTR MaLR 0 364 15 326 118 0 0 chr9 33790239 33790290 -108481154 - THE1B LTR MaLR -230 134 84 * 2373 283 111 14 chr9 33790293 33791214 -108480230 - L1MA4A LINE L1 -5537 1672 246 * 4062 173 9 13 chr9 33791212 33791906 -108479538 - THE1-int LTR MaLR -263 1317 627 1124 144 140 22 chr9 33791906 33792135 -108479309 - MSTA LTR MaLR -172 256 1 694 264 35 0 chr9 33792136 33792333 -108479111 - L1MA4A LINE L1 -6979 230 27 205 100 40 0 chr9 33792795 33792845 -108478599 + (TA)n Simple_repeat Simple_repeat 2 53 0 1522 106 0 0 chr9 33793369 33793567 -108477877 - AluSg/x SINE Alu -15 295 98 285 326 61 14 chr9 33794239 33794386 -108477058 + L1MC4a LINE L1 5771 5924 -1884 378 0 0 0 chr9 33794520 33794562 -108476882 + (CA)n Simple_repeat Simple_repeat 2 43 0 33 0 0 0 chr9 33794769 33794802 -108476642 + AT_rich Low_complexity Low_complexity 1 33 0 228 250 0 0 chr9 33795422 33795470 -108475974 + L1MDa LINE L1 655 702 -5838 2818 157 25 4 chr9 33795488 33795973 -108475471 - LOR1a LTR ERV1 -2 495 1 218 179 0 0 chr9 33796168 33796207 -108475237 + (TG)n Simple_repeat Simple_repeat 2 40 0 475 174 0 0 chr9 33796321 33796407 -108475037 + L1PA15-16 LINE L1 1498 1583 -5266 2896 182 18 14 chr9 33796409 33796981 -108474463 + L1PA16 LINE L1 5476 6049 -117 4896 59 11 5 chr9 33796981 33798099 -108473345 + MER11A LTR ERVK 1 1266 0 55634 79 5 2 chr9 33798099 33805294 -108466150 + HERVK11 LTR ERVK 1 7214 -739 5340 254 35 14 chr9 33805300 33807082 -108464362 + L1 LINE L1 2299 4117 -2029 * 8532 135 8 34 chr9 33807058 33808400 -108463044 - THE1C-int LTR MaLR -273 1307 1 2294 148 5 13 chr9 33808400 33808777 -108462667 - THE1C LTR MaLR 0 375 2 1916 159 39 8 chr9 33808779 33809143 -108462301 + L1PA16 LINE L1 5789 6163 -3 1605 151 12 0 chr9 33809144 33809403 -108462041 + L1PB4 LINE L1 5891 6152 -4 259 230 35 46 chr9 33809440 33809527 -108461917 + HAL1 LINE L1 1627 1712 -795 2631 126 3 0 chr9 33810401 33810775 -108460669 - THE1C LTR MaLR 0 375 1 541 268 26 20 chr9 33810803 33810956 -108460488 - MLT1I LTR MaLR -208 201 48 294 180 0 0 chr9 33811623 33811684 -108459760 + (TA)n Simple_repeat Simple_repeat 2 62 0 207 294 0 20 chr9 33811791 33811842 -108459602 + L2 LINE L2 3243 3292 -21 929 165 24 12 chr9 33812128 33812298 -108459146 - MER2 DNA MER2_type -172 173 2 566 254 77 4 chr9 33812683 33812953 -108458491 - L1MB4 LINE L1 -34 6146 5825 202 264 14 14 chr9 33813014 33813086 -108458358 + T-rich Low_complexity Low_complexity 3 74 0 10776 130 25 12 chr9 33814225 33815994 -108455450 + Tigger1 DNA MER2_type 626 2417 -1 231 274 16 32 chr9 33816672 33816796 -108454648 + (CAGAGA)n Simple_repeat Simple_repeat 4 125 0 2022 154 19 47 chr9 33817252 33817616 -108453828 + LTR18A LTR ERVL 2 355 -2 21 36 0 0 chr9 33817761 33817789 -108453655 + AT_rich Low_complexity Low_complexity 1 28 0 255 316 23 30 chr9 33817958 33818091 -108453353 - MLT1L LTR MaLR -8 607 476 330 232 134 108 chr9 33818384 33818578 -108452866 - MLT1L LTR MaLR -414 201 3 218 133 0 22 chr9 33818578 33818623 -108452821 + (CAT)n Simple_repeat Simple_repeat 3 46 0 229 347 0 0 chr9 33818920 33818992 -108452452 + L2 LINE L2 3234 3305 -8 183 129 0 0 chr9 33819449 33819480 -108451964 + (TA)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr9 33820299 33820327 -108451117 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr9 33820566 33820612 -108450832 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr9 33821548 33821583 -108449861 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr9 33821896 33821940 -108449504 + AT_rich Low_complexity Low_complexity 1 44 0 1351 172 27 8 chr9 33822460 33822722 -108448722 + L1MB3 LINE L1 5908 6174 -9 660 203 0 8 chr9 33822752 33822885 -108448559 + FLAM_C SINE Alu 2 133 0 21 57 0 0 chr9 33823391 33823426 -108448018 + AT_rich Low_complexity Low_complexity 1 35 0 1089 260 14 67 chr9 33823689 33824047 -108447397 + MER67D LTR ERV1 1 339 -175 6059 206 26 25 chr9 33824968 33826877 -108444567 + L1MA4 LINE L1 17 1917 -4065 8384 122 42 3 chr9 33826881 33828134 -108443310 + THE1B-int LTR MaLR 280 1580 0 2217 133 33 28 chr9 33828134 33828496 -108442948 + THE1B LTR MaLR 1 364 0 7635 214 38 54 chr9 33828496 33829801 -108441643 + L1MA4 LINE L1 2081 3406 -3076 1638 196 7 17 chr9 33829801 33830092 -108441352 + AluJb SINE Alu 1 288 -24 7635 214 38 54 chr9 33830092 33832956 -108438488 + L1MA4 LINE L1 3406 6116 -366 557 96 0 0 chr9 33832959 33833032 -108438412 - LTR1 LTR ERV1 0 785 713 2695 221 15 38 chr9 33833032 33833635 -108437809 - HUERS-P2 LTR ERV1 -2099 989 401 779 172 42 48 chr9 33833715 33833749 -108437695 - HUERS-P2 LTR ERV1 -2715 373 340 2355 47 10 3 chr9 33833749 33834045 -108437399 - AluY SINE Alu -13 298 1 779 172 42 48 chr9 33834045 33834318 -108437126 - HUERS-P2 LTR ERV1 -2748 340 5 4030 122 37 79 chr9 33834321 33835141 -108436303 - LTR1 LTR ERV1 0 785 1 1580 203 3 29 chr9 33835141 33835516 -108435928 + L1MA4 LINE L1 6116 6480 -2 359 296 166 14 chr9 33835807 33836030 -108435414 + L1ME4a LINE L1 5789 6045 -76 221 132 0 75 chr9 33836117 33836170 -108435274 + (TTTTTA)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr9 33836452 33836481 -108434963 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 33836887 33836908 -108434536 + AT_rich Low_complexity Low_complexity 1 21 0 5642 141 14 10 chr9 33837245 33838187 -108433257 - Tigger1 DNA MER2_type 0 2418 1473 1362 181 59 7 chr9 33838188 33838458 -108432986 - AluJo SINE Alu -17 295 12 9070 141 25 2 chr9 33838467 33839919 -108431525 - Tigger1 DNA MER2_type -932 1486 2 918 62 0 0 chr9 33841012 33841124 -108430320 + L1PA7 LINE L1 6033 6144 -10 267 306 104 104 chr9 33842522 33843188 -108428256 + L2 LINE L2 1716 2381 -933 296 363 81 22 chr9 33843612 33843885 -108427559 + L2 LINE L2 2563 2851 -463 * 590 279 36 27 chr9 33843882 33844104 -108427340 + MIR SINE MIR 39 262 0 183 278 62 10 chr9 33844304 33844401 -108427043 - L2 LINE L2 -94 3219 3118 2237 111 3 0 chr9 33844600 33844898 -108426546 + AluSg SINE Alu 3 301 -9 225 0 0 0 chr9 33845386 33845411 -108426033 + (A)n Simple_repeat Simple_repeat 1 25 0 7090 193 134 16 chr9 33845802 33847371 -108424073 + MER52A LTR ERV1 1 1755 0 387 327 51 33 chr9 33849227 33849441 -108422003 + L1MC/D LINE L1 5425 5642 -2166 249 286 57 29 chr9 33849605 33849710 -108421734 - L2 LINE L2 -1292 2022 1915 26 50 0 0 chr9 33849710 33849750 -108421694 + AT_rich Low_complexity Low_complexity 1 40 0 2294 97 0 7 chr9 33851342 33851642 -108419802 + AluSc SINE Alu 1 298 -11 2146 128 0 0 chr9 33851942 33852247 -108419197 + AluSx SINE Alu 1 305 -7 7024 118 2 5 chr9 33852250 33853393 -108418051 + L1MA2 LINE L1 5165 6304 0 3083 164 18 9 chr9 33853893 33854449 -108416995 + MER67C LTR ERV1 150 710 0 275 345 20 20 chr9 33854475 33854623 -108416821 + L2 LINE L2 2631 2778 -536 * 434 252 19 0 chr9 33854622 33854725 -108416719 - MIR SINE MIR -11 251 147 4961 152 23 22 chr9 33855338 33856340 -108415104 + L1PB4 LINE L1 5153 6152 -4 1069 226 124 3 chr9 33856850 33857164 -108414280 - MER119 DNA MER1_type 0 583 232 346 317 111 31 chr9 33857213 33857415 -108414029 + MIR SINE MIR 8 228 -34 180 0 0 0 chr9 33858447 33858467 -108412977 + (A)n Simple_repeat Simple_repeat 1 20 0 522 253 143 11 chr9 33859884 33860066 -108411378 - MIR SINE MIR -34 228 23 422 244 46 30 chr9 33860540 33860671 -108410773 - MER94 DNA DNA 0 134 2 21 36 0 0 chr9 33865254 33865282 -108406162 + AT_rich Low_complexity Low_complexity 1 28 0 219 24 49 24 chr9 33865487 33865528 -108405916 + (TA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr9 33865766 33865790 -108405654 + AT_rich Low_complexity Low_complexity 1 24 0 324 313 116 25 chr9 33866506 33866704 -108404740 + HAL1b LINE L1 263 478 -870 21 0 0 0 chr9 33866898 33866919 -108404525 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 33866988 33867014 -108404430 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr9 33867117 33867151 -108404293 + AT_rich Low_complexity Low_complexity 1 34 0 229 223 91 25 chr9 33867212 33867333 -108404111 + L1M4 LINE L1 4132 4260 -1886 27 49 0 0 chr9 33867360 33867401 -108404043 + AT_rich Low_complexity Low_complexity 1 41 0 292 310 62 18 chr9 33869496 33869609 -108401835 - MIR SINE MIR -131 131 14 295 331 88 14 chr9 33869939 33870087 -108401357 + MIR3 SINE MIR 29 187 -21 26 0 0 0 chr9 33870764 33870790 -108400654 + AT_rich Low_complexity Low_complexity 1 26 0 7227 41 6 0 chr9 33872607 33874227 -108397217 + L1PA5 LINE L1 4517 6143 -11 536 155 0 0 chr9 33874663 33874760 -108396684 - L1MA9 LINE L1 -35 6277 6181 733 99 0 18 chr9 33875346 33875471 -108395973 - L1MA3 LINE L1 -58 6245 6124 675 93 56 0 chr9 33875471 33875577 -108395867 + L1MA3 LINE L1 6192 6305 0 227 228 14 41 chr9 33876608 33876753 -108394691 + (TTA)n Simple_repeat Simple_repeat 2 142 0 981 40 0 16 chr9 33876884 33877010 -108394434 + L1PA6 LINE L1 6027 6150 -4 268 322 0 35 chr9 33877028 33877115 -108394329 + HAL1b LINE L1 462 545 -803 22 35 0 0 chr9 33877552 33877581 -108393863 + AT_rich Low_complexity Low_complexity 1 29 0 2452 66 0 3 chr9 33877619 33877921 -108393523 - AluY SINE Alu -10 301 1 264 343 59 15 chr9 33878227 33878431 -108393013 + L1MC/D LINE L1 5669 5881 -1927 644 169 7 63 chr9 33878731 33878873 -108392571 + AluJo SINE Alu 1 134 -178 25 31 0 0 chr9 33878873 33878905 -108392539 + AT_rich Low_complexity Low_complexity 1 32 0 30 27 0 0 chr9 33878989 33879026 -108392418 + AT_rich Low_complexity Low_complexity 1 37 0 186 103 0 0 chr9 33879211 33879240 -108392204 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 8798 125 29 4 chr9 33879594 33881711 -108389733 + L1PA11 LINE L1 3854 6158 -16 49 60 0 0 chr9 33881917 33882001 -108389443 + AT_rich Low_complexity Low_complexity 1 84 0 21 71 0 0 chr9 33882063 33882105 -108389339 + AT_rich Low_complexity Low_complexity 1 42 0 273 412 8 0 chr9 33882119 33882238 -108389206 + L2 LINE L2 3153 3272 0 750 318 5 9 chr9 33882889 33883103 -108388341 - MIR SINE MIR -15 247 35 188 373 78 0 chr9 33883959 33884061 -108387383 - L2 LINE L2 -51 3221 3112 212 281 0 10 chr9 33884256 33884352 -108387092 + GA-rich Low_complexity Low_complexity 2 96 0 210 253 121 12 chr9 33884548 33884631 -108386813 + MER5B DNA MER1_type 87 178 0 573 188 0 0 chr9 33884708 33884820 -108386624 - L1MB1 LINE L1 -13 6155 6044 227 217 0 33 chr9 33884830 33884890 -108386554 - L1MB1 LINE L1 -91 6077 6020 320 309 75 30 chr9 33886027 33886228 -108385216 + L1ME LINE L1 5562 5771 -350 229 227 61 0 chr9 33886640 33886706 -108384738 + HsTC2 DNA Tc2 224 293 -1605 13736 193 66 16 chr9 33887155 33891351 -108380093 + L1M2 LINE L1 1 4411 -2437 497 296 92 7 chr9 33892034 33892186 -108379258 - MIR SINE MIR -64 198 34 624 265 25 0 chr9 33894114 33894276 -108377168 - L2 LINE L2 -659 2655 2490 305 310 23 54 chr9 33895740 33895869 -108375575 + MIR SINE MIR 16 140 -122 5652 72 1 1 chr9 33895963 33896699 -108374745 - L1PA7 LINE L1 -4 6150 5415 230 322 70 25 chr9 33897127 33897441 -108374003 + L1ME LINE L1 5577 5904 -217 1824 167 60 6 chr9 33897441 33897788 -108373656 - MER47A DNA MER2_type 0 366 1 3598 170 16 3 chr9 33897797 33898404 -108373040 + Tigger7 DNA MER2_type 1 615 -1872 1712 148 65 6 chr9 33898405 33898729 -108372715 + MER61A LTR ERV1 1 343 0 2547 186 46 11 chr9 33898730 33899256 -108372188 + MER61A-int LTR ERV1 2 545 -4672 2489 66 0 0 chr9 33899327 33899629 -108371815 + AluSc SINE Alu 3 304 -5 21 57 0 0 chr9 33900912 33900947 -108370497 + AT_rich Low_complexity Low_complexity 1 35 0 31 96 0 0 chr9 33901459 33901553 -108369891 + AT_rich Low_complexity Low_complexity 1 94 0 374 268 60 38 chr9 33902010 33902193 -108369251 + L1ME LINE L1 5359 5545 -576 285 301 96 45 chr9 33902672 33902871 -108368573 - L1ME3A LINE L1 -1 6169 5961 848 304 91 43 chr9 33902928 33903533 -108367911 - L1ME3A LINE L1 -214 5956 5323 * 2371 309 49 30 chr9 33903526 33904406 -108367038 + L1PA15 LINE L1 6 902 -5885 * 13541 214 27 32 chr9 33904389 33910011 -108361433 + L1PA15 LINE L1 1221 6813 -3 398 274 261 14 chr9 33910067 33910553 -108360891 - L1ME3A LINE L1 -810 5336 4731 23 0 0 0 chr9 33911243 33911266 -108360178 + AT_rich Low_complexity Low_complexity 1 23 0 243 347 40 5 chr9 33911485 33911684 -108359760 + L1 LINE L1 3628 3833 -2313 8164 177 32 12 chr9 33912213 33914757 -108356687 - L1MA5A LINE L1 -8 6289 3691 9398 80 1 2 chr9 33914757 33916806 -108354638 - L1PA4 LINE L1 0 6155 4106 8164 177 32 12 chr9 33916806 33916825 -108354619 - L1MA5A LINE L1 -2606 3691 3674 997 205 9 5 chr9 33917448 33917672 -108353772 + L1MA7 LINE L1 6061 6285 -6 30 59 0 0 chr9 33917868 33917919 -108353525 + AT_rich Low_complexity Low_complexity 1 51 0 25594 69 7 0 chr9 33918430 33921789 -108349655 - L1P LINE L1 -2753 3393 11 21 0 0 0 chr9 33921805 33921826 -108349618 + AT_rich Low_complexity Low_complexity 1 21 0 221 273 169 0 chr9 33922942 33923019 -108348425 + L2 LINE L2 3224 3313 0 296 245 10 31 chr9 33923350 33923448 -108347996 + MIR SINE MIR 27 122 -86 2073 114 14 0 chr9 33924349 33924638 -108346806 - AluSx SINE Alu -19 293 1 238 311 148 8 chr9 33925386 33925508 -108345936 - MIR SINE MIR -122 140 2 805 182 89 53 chr9 33925799 33926024 -108345420 - MER46A DNA MER2_type -2 234 2 346 359 43 0 chr9 33926211 33926328 -108345116 + MIR SINE MIR 33 154 -108 30 59 0 0 chr9 33927084 33927135 -108344309 + AT_rich Low_complexity Low_complexity 1 51 0 458 258 93 41 chr9 33928279 33928473 -108342971 + MIR SINE MIR 24 227 -35 1188 258 105 40 chr9 33928488 33929011 -108342433 - MLT1E1 LTR MaLR 0 654 98 270 0 0 0 chr9 33929041 33929071 -108342373 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2267 142 11 0 chr9 33929071 33929438 -108342006 - L1PB1 LINE L1 -5 6146 5776 3460 136 17 8 chr9 33929448 33930293 -108341151 + L1PB1 LINE L1 4919 5773 -378 2053 127 3 10 chr9 33930841 33931140 -108340304 + AluSg SINE Alu 1 297 -13 1948 180 31 6 chr9 33931365 33931721 -108339723 + MSTB LTR MaLR 1 365 -61 1039 249 19 8 chr9 33931763 33932020 -108339424 - AluJb SINE Alu -52 260 1 342 138 35 0 chr9 33932025 33932083 -108339361 + MSTB LTR MaLR 366 425 -1 230 310 23 32 chr9 33932173 33932271 -108339173 - MIR SINE MIR -57 151 54 901 133 28 7 chr9 33932758 33932901 -108338543 + MER30 DNA MER1_type 85 230 0 3107 177 25 13 chr9 33932902 33933582 -108337862 - L1 LINE L1 -1901 4245 3472 189 0 0 0 chr9 33933586 33933607 -108337837 + (TG)n Simple_repeat Simple_repeat 2 22 0 227 93 23 0 chr9 33933610 33933653 -108337791 + (TA)n Simple_repeat Simple_repeat 1 44 0 663 200 35 58 chr9 33933653 33933883 -108337561 - L1MDb LINE L1 -4961 1119 896 3332 81 7 2 chr9 33933914 33934347 -108337097 + LTR3b LTR ERVK 3 437 0 563 176 9 9 chr9 33934458 33934566 -108336878 + HERVK3 LTR ERVK 55 162 -7081 * 1129 146 1 1 chr9 33934562 33934756 -108336688 + HERVK3 LTR ERVK 5188 5579 -366 3460 76 7 0 chr9 33934794 33935228 -108336216 + LTR3b LTR ERVK 1 437 0 391 300 20 10 chr9 33935255 33935455 -108335989 - L1MDb LINE L1 -5182 888 687 230 79 0 26 chr9 33935769 33935807 -108335637 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 635 304 135 97 chr9 33935958 33936956 -108334488 - HAL1 LINE L1 -1375 1132 93 1471 156 71 97 chr9 33936956 33937391 -108334053 + MSTC LTR MaLR 3 426 -2 635 304 135 97 chr9 33937391 33937417 -108334027 - HAL1 LINE L1 -2414 93 69 21 36 0 0 chr9 33939193 33939221 -108332223 + AT_rich Low_complexity Low_complexity 1 28 0 445 230 26 18 chr9 33939229 33939342 -108332102 + MIR SINE MIR 147 260 -2 1390 113 66 14 chr9 33940403 33940616 -108330828 - AluSq SINE Alu -89 224 1 2410 74 3 0 chr9 33941055 33941353 -108330091 + AluSq SINE Alu 1 299 -14 422 146 106 133 chr9 33942115 33942266 -108329178 + MER69 DNA AcHobo 2380 2526 0 277 305 24 18 chr9 33942805 33942969 -108328475 + L1P LINE L1 2161 2325 -3821 262 275 25 0 chr9 33943242 33943322 -108328122 + (TA)n Simple_repeat Simple_repeat 1 82 0 343 108 31 31 chr9 33943495 33943624 -108327820 + (TA)n Simple_repeat Simple_repeat 2 130 0 723 285 160 45 chr9 33943624 33943882 -108327562 + L1M4 LINE L1 2984 3211 -2935 2101 77 0 22 chr9 33943882 33944154 -108327290 + AluSc SINE Alu 35 300 -9 723 285 160 45 chr9 33944154 33944607 -108326837 + L1M4 LINE L1 3211 3777 -2369 1973 132 24 3 chr9 33945813 33946102 -108325342 + AluSx SINE Alu 5 299 -13 2657 128 163 20 chr9 33946102 33946557 -108324887 + MER1A DNA MER1_type 6 525 -4 1746 161 37 3 chr9 33946621 33946920 -108324524 - AluJb SINE Alu 0 312 4 1150 275 57 82 chr9 33948007 33948519 -108322925 - MER45C DNA AcHobo -439 514 16 379 273 125 31 chr9 33948561 33948689 -108322755 + MIR3 SINE MIR 12 151 -57 587 252 145 6 chr9 33948776 33948935 -108322509 + MER5A DNA MER1_type 9 189 0 180 0 0 0 chr9 33950071 33950091 -108321353 + (TC)n Simple_repeat Simple_repeat 2 21 0 755 316 68 28 chr9 33950262 33950512 -108320932 + MER115 DNA AcHobo 61 320 -373 459 210 84 42 chr9 33950714 33950890 -108320554 + MIR SINE MIR 8 193 -63 440 35 17 0 chr9 33950933 33950991 -108320453 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 2279 193 19 14 chr9 33951551 33951976 -108319468 + MER6A DNA MER2_type 1 427 -178 497 115 11 11 chr9 33951977 33952064 -108319380 + L1MA4 LINE L1 6209 6295 -5 1173 123 11 0 chr9 33952115 33952294 -108319150 + MER6A DNA MER2_type 425 605 0 402 252 50 8 chr9 33952462 33952581 -108318863 + MLT2E LTR ERVL 1 124 -504 484 316 79 55 chr9 33954326 33954706 -108316738 - L2 LINE L2 -2 3311 2923 224 375 45 11 chr9 33954762 33954938 -108316506 - L2 LINE L2 -489 2825 2644 1192 53 0 7 chr9 33955818 33955970 -108315474 - L1PA7 LINE L1 -2 6152 6002 198 217 0 0 chr9 33956531 33956600 -108314844 + (TA)n Simple_repeat Simple_repeat 1 69 0 247 239 68 94 chr9 33956875 33956992 -108314452 - L2 LINE L2 -18 3295 3182 1957 148 0 3 chr9 33957084 33957374 -108314070 + AluJb SINE Alu 1 289 -23 530 216 58 47 chr9 33957526 33957716 -108313728 - Charlie1 DNA MER1_type 0 2761 2570 43643 42 1 6 chr9 33957774 33963946 -108307498 - L1PA3 LINE L1 -4 6151 9 4234 215 34 20 chr9 33963954 33965011 -108306433 - Charlie1 DNA MER1_type -214 2547 1476 1083 270 44 100 chr9 33965131 33965394 -108306050 - L1MDa LINE L1 -4341 2380 2104 263 28 28 0 chr9 33965394 33965430 -108306014 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 1083 270 44 100 chr9 33965430 33965815 -108305629 - L1MDa LINE L1 -4617 2104 1699 2000 117 71 31 chr9 33965815 33966165 -108305279 + THE1B LTR MaLR 1 364 0 11613 94 8 2 chr9 33966165 33967736 -108303708 + THE1B-int LTR MaLR 1 1580 0 2181 132 48 25 chr9 33967736 33968092 -108303352 + THE1B LTR MaLR 1 364 0 1083 270 44 100 chr9 33968092 33968520 -108302924 - L1MDa LINE L1 -5019 1702 1298 1894 146 7 0 chr9 33968529 33968839 -108302605 - AluSp SINE Alu 0 312 1 35 24 0 0 chr9 33968887 33968929 -108302515 + AT_rich Low_complexity Low_complexity 1 42 0 2328 191 39 15 chr9 33969678 33970145 -108301299 + Tigger6a DNA MER2_type 1 478 -605 1228 163 21 8 chr9 33970146 33970236 -108301208 - L1M3 LINE L1 -583 5585 5498 1667 170 125 47 chr9 33970236 33970637 -108300807 + MSTB1 LTR MaLR 1 432 0 1228 163 21 8 chr9 33970637 33970785 -108300659 - L1M3 LINE L1 -670 5498 5344 2620 155 34 0 chr9 33970785 33971247 -108300197 + L1MA10 LINE L1 5851 6331 -3 1460 186 15 82 chr9 33971304 33971707 -108299737 + Tigger6a DNA MER2_type 707 1082 -1 551 321 128 45 chr9 33971846 33972313 -108299131 + L2 LINE L2 2805 3310 -3 290 361 90 22 chr9 33972508 33972918 -108298526 + L2 LINE L2 2176 2613 -701 6680 37 10 6 chr9 33973231 33974098 -108297346 - L1PA5 LINE L1 0 6154 5284 1103 230 26 59 chr9 33974102 33974719 -108296725 + L1M3c LINE L1 1294 1930 -4280 2069 151 0 0 chr9 33974719 33975023 -108296421 + AluSx SINE Alu 1 304 -8 1103 230 26 59 chr9 33975023 33975165 -108296279 + L1M3c LINE L1 1930 5208 -1002 2430 159 28 14 chr9 33975166 33975588 -108295856 - MSTA LTR MaLR 0 428 1 7026 172 45 4 chr9 33975588 33976893 -108294551 - MSTA-int LTR MaLR 0 1651 293 4812 151 31 5 chr9 33976912 33977875 -108293569 + L1PA16 LINE L1 5236 6221 -9 1509 246 59 67 chr9 33977882 33978277 -108293167 + L1MA9 LINE L1 2702 3098 -4467 2130 125 10 0 chr9 33978277 33978572 -108292872 - AluSp SINE Alu -15 298 1 1509 246 59 67 chr9 33978572 33978990 -108292454 + L1MA9 LINE L1 3098 3509 -4056 2327 84 3 0 chr9 33978990 33979287 -108292157 - AluY SINE Alu -13 298 1 1509 246 59 67 chr9 33979287 33979449 -108291995 + L1MA9 LINE L1 3509 3671 -3894 * 1967 210 72 15 chr9 33979443 33980043 -108291401 + L1MA9 LINE L1 4065 4698 -2867 5717 202 30 21 chr9 33980072 33982619 -108288825 + L1MA9 LINE L1 5124 7695 -36 358 99 44 44 chr9 33982640 33982731 -108288713 + L1P4 LINE L1 5352 5442 -723 * 895 219 46 119 chr9 33982729 33983560 -108287884 + L1MCa LINE L1 985 1790 -4638 3479 174 73 11 chr9 33983655 33984011 -108287433 + L1MA9 LINE L1 5422 5755 -557 225 0 0 0 chr9 33984011 33984036 -108287408 + (TA)n Simple_repeat Simple_repeat 2 26 0 3479 174 73 11 chr9 33984036 33984462 -108286982 + L1MA9 LINE L1 5755 6252 -60 18551 168 28 6 chr9 33984471 33991901 -108279543 + L1PA11 LINE L1 5 7610 -2 198 0 0 0 chr9 33991926 33991948 -108279496 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 5631 106 50 5 chr9 33991948 33992239 -108279205 + L1PA14 LINE L1 4067 4343 -1818 5631 99 56 0 chr9 33992239 33993935 -108277509 + L1PA14 LINE L1 4410 6152 -9 5631 106 50 5 chr9 33993935 33993970 -108277474 + L1PA14 LINE L1 4343 6152 -9 336 167 14 0 chr9 33993961 33994033 -108277411 + L1MA9 LINE L1 6240 6312 0 * 307 346 60 37 chr9 33994052 33994269 -108277175 + L2 LINE L2 3048 3269 -3 320 309 8 16 chr9 33994864 33994987 -108276457 - MIR SINE MIR -24 238 117 24 91 0 0 chr9 33995281 33995347 -108276097 + AT_rich Low_complexity Low_complexity 1 66 0 245 318 119 29 chr9 33995354 33995665 -108275779 + L2 LINE L2 1700 2038 -1276 22 70 0 0 chr9 33996549 33996592 -108274852 + AT_rich Low_complexity Low_complexity 1 43 0 1106 38 0 0 chr9 33996592 33996724 -108274720 - L1PA3 LINE L1 -3 6152 6021 1748 137 28 4 chr9 33996738 33996993 -108274451 + AluSx SINE Alu 1 261 -51 227 100 0 25 chr9 33996996 33997036 -108274408 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1208 222 34 66 chr9 33997685 33998063 -108273381 + MLT1A2 LTR MaLR 1 366 -8 1782 168 0 14 chr9 33999762 34000042 -108271402 + AluJb SINE Alu 14 289 -23 237 316 0 0 chr9 34000521 34000578 -108270866 - L2 LINE L2 -10 3262 3206 219 218 0 0 chr9 34000901 34000956 -108270488 + (TA)n Simple_repeat Simple_repeat 2 56 0 2047 170 76 34 chr9 34001461 34001985 -108269459 + L1MB7 LINE L1 5628 6173 -11 235 326 184 43 chr9 34002495 34002636 -108268808 - MIR SINE MIR -98 164 4 245 352 69 28 chr9 34003299 34003345 -108268099 + MIR SINE MIR 22 65 -197 2056 166 22 96 chr9 34003345 34003845 -108267599 + MLT2C2 LTR ERVL 2 464 0 245 352 69 28 chr9 34003845 34003943 -108267501 + MIR SINE MIR 65 172 -90 683 264 10 30 chr9 34004047 34004244 -108267200 + Tigger5 DNA MER2_type 118 310 -2013 * 917 157 0 6 chr9 34004243 34004402 -108267042 + Tigger5 DNA MER2_type 2166 2323 0 6501 260 41 44 chr9 34004402 34008081 -108263363 - L1M4 LINE L1 -3809 3358 2 204 175 35 35 chr9 34008301 34008358 -108263086 + (CTTTA)n Simple_repeat Simple_repeat 2 58 0 250 310 0 0 chr9 34008361 34008419 -108263025 - MER2 DNA MER2_type -8 337 280 1107 187 5 0 chr9 34008448 34008657 -108262787 - MER2 DNA MER2_type -135 210 1 665 290 56 39 chr9 34010046 34010277 -108261167 - MIR SINE MIR -19 243 9 22 70 0 0 chr9 34010908 34010951 -108260493 + AT_rich Low_complexity Low_complexity 1 43 0 27 29 0 0 chr9 34011432 34011466 -108259978 + AT_rich Low_complexity Low_complexity 1 34 0 236 207 17 0 chr9 34012015 34012073 -108259371 - MER67D LTR ERV1 -5 509 451 1446 166 57 44 chr9 34012101 34012497 -108258947 - MER67C LTR ERV1 -243 271 1 22 35 0 0 chr9 34012815 34012844 -108258600 + AT_rich Low_complexity Low_complexity 1 29 0 1998 125 50 36 chr9 34013112 34013471 -108257973 - THE1B LTR MaLR 0 364 1 11395 103 7 0 chr9 34013471 34015038 -108256406 - THE1B-int LTR MaLR 0 1580 3 787 171 56 88 chr9 34015044 34015260 -108256184 - THE1B LTR MaLR -4 360 152 21353 112 9 11 chr9 34015271 34018685 -108252759 + L1PA6 LINE L1 12 3419 -2727 836 128 0 0 chr9 34018674 34018807 -108252637 + L1P LINE L1 4790 4922 -1224 * 14356 65 14 0 chr9 34018808 34021554 -108249890 + L1PA6 LINE L1 3416 6148 -6 190 304 0 0 chr9 34021560 34021606 -108249838 - MIR SINE MIR -158 104 59 948 162 30 0 chr9 34021617 34021784 -108249660 - THE1B LTR MaLR -191 173 2 219 189 0 0 chr9 34021842 34021895 -108249549 + A-rich Low_complexity Low_complexity 1 53 0 1324 83 11 0 chr9 34022439 34022619 -108248825 - AluSg/x SINE Alu -2 310 129 1921 122 31 10 chr9 34023131 34023419 -108248025 - AluSg1 SINE Alu -15 294 1 276 188 0 0 chr9 34023515 34023579 -108247865 + CT-rich Low_complexity Low_complexity 1 64 0 207 139 0 0 chr9 34023578 34023614 -108247830 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 3789 61 2 10 chr9 34024188 34024677 -108246767 + L1PA6 LINE L1 5662 6146 -8 7385 32 0 0 chr9 34024931 34026009 -108245435 - L1PA4 LINE L1 -2 6153 5077 329 340 132 37 chr9 34026431 34026811 -108244633 - L2 LINE L2 -451 2863 2448 221 356 77 0 chr9 34026809 34027003 -108244441 - L2 LINE L2 -1777 1537 1329 * 2550 158 6 53 chr9 34027128 34027653 -108243791 + L1MB3 LINE L1 5683 6182 -1 3873 32 4 0 chr9 34028025 34028486 -108242958 - L1PA3 LINE L1 0 6155 5693 1826 13 18 0 chr9 34028486 34028710 -108242734 + L1P LINE L1 4276 4503 -1643 468 350 45 12 chr9 34028897 34029140 -108242304 - MIR SINE MIR -10 252 2 234 0 0 0 chr9 34030764 34030790 -108240654 + (TG)n Simple_repeat Simple_repeat 2 27 0 264 320 73 23 chr9 34030915 34031134 -108240310 - L1ME LINE L1 -302 5819 5590 23 33 0 0 chr9 34031361 34031391 -108240053 + AT_rich Low_complexity Low_complexity 1 30 0 254 283 220 25 chr9 34031419 34031578 -108239866 - L2 LINE L2 -86 3227 3038 10833 137 10 33 chr9 34031881 34032012 -108239432 - L1P LINE L1 -1105 5041 4909 192 77 0 0 chr9 34032012 34032038 -108239406 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 10833 137 10 33 chr9 34032038 34032062 -108239382 - L1P LINE L1 -1237 4909 4886 2064 67 8 0 chr9 34032062 34032330 -108239114 - L1PA7 LINE L1 -7 6147 5878 10833 137 10 33 chr9 34032330 34034091 -108237353 - L1P LINE L1 -1260 4886 3168 419 339 93 36 chr9 34035030 34035278 -108236166 + HAL1 LINE L1 2246 2507 0 3278 188 47 75 chr9 34035872 34036941 -108234503 + MER52A LTR ERV1 16 1008 -311 501 223 25 0 chr9 34036941 34037175 -108234269 + L1MA9 LINE L1 5956 6291 -21 1824 178 3 13 chr9 34037237 34037552 -108233892 - AluJo SINE Alu 0 312 1 21 0 0 0 chr9 34037638 34037659 -108233785 + AT_rich Low_complexity Low_complexity 1 21 0 1236 161 0 5 chr9 34037714 34037913 -108233531 - Tigger5 DNA MER2_type 0 2323 2126 499 227 0 0 chr9 34037930 34038027 -108233417 - Tigger5 DNA MER2_type -2217 106 10 302 330 117 9 chr9 34038323 34038666 -108232778 - L1ME LINE L1 -394 5727 5350 21 0 0 0 chr9 34038680 34038701 -108232743 + AT_rich Low_complexity Low_complexity 1 21 0 313 279 26 51 chr9 34038827 34039043 -108232401 - L1ME LINE L1 -640 5507 5296 401 288 76 60 chr9 34039044 34039360 -108232084 - L1ME LINE L1 -1799 4330 4010 257 236 11 22 chr9 34039360 34039449 -108231995 - L1ME LINE L1 -5059 1060 973 5215 136 23 5 chr9 34039475 34039958 -108231486 - L1PA16 LINE L1 0 6166 5693 2518 60 0 0 chr9 34039958 34040259 -108231185 - AluY SINE Alu -10 301 1 5215 136 23 5 chr9 34040259 34040613 -108230831 - L1PA16 LINE L1 -473 5693 5347 369 0 0 0 chr9 34040613 34040654 -108230790 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5215 136 23 5 chr9 34040654 34041349 -108230095 - L1PA16 LINE L1 -819 5347 4600 3920 207 53 41 chr9 34041349 34042307 -108229137 - MER52A LTR ERV1 0 1755 1 551 229 65 0 chr9 34042307 34042496 -108228948 - L1PA16 LINE L1 -1543 4603 4387 617 238 22 6 chr9 34042503 34042684 -108228760 - L1 LINE L1 -1631 4515 4332 373 348 24 52 chr9 34042711 34043039 -108228405 - L1ME LINE L1 -5357 762 444 27 49 0 0 chr9 34043292 34043333 -108228111 + AT_rich Low_complexity Low_complexity 1 41 0 261 0 0 0 chr9 34043953 34043982 -108227462 + (TG)n Simple_repeat Simple_repeat 2 30 0 5320 114 22 97 chr9 34044008 34044584 -108226860 + Tigger3b DNA MER2_type 3 425 -2604 1951 155 0 10 chr9 34044584 34044887 -108226557 + AluJb SINE Alu 1 300 -12 5320 114 22 97 chr9 34044887 34045638 -108225806 + Tigger3b DNA MER2_type 425 1231 -1 186 133 0 0 chr9 34045638 34045668 -108225776 + (TA)n Simple_repeat Simple_repeat 2 31 0 689 238 61 6 chr9 34046217 34046381 -108225063 - MLT1D LTR MaLR 0 505 333 1736 210 103 19 chr9 34046385 34046919 -108224525 + MLT1D LTR MaLR 1 621 -5 577 168 118 0 chr9 34046956 34047075 -108224369 - MLT1D LTR MaLR -351 154 22 37 39 0 0 chr9 34047678 34047729 -108223715 + AT_rich Low_complexity Low_complexity 1 51 0 615 330 38 8 chr9 34047806 34048045 -108223399 + LTR16A LTR ERVL 205 450 0 435 224 28 0 chr9 34048126 34048233 -108223211 - MIR SINE MIR -22 240 131 6396 141 19 11 chr9 34048413 34048603 -108222841 - L1PB1 LINE L1 0 6151 5964 243 0 0 0 chr9 34048603 34048630 -108222814 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1958 109 11 25 chr9 34048630 34048913 -108222531 - AluSg SINE Alu -31 279 1 6396 141 19 11 chr9 34048913 34050755 -108220689 - L1PB1 LINE L1 -186 5965 4110 1322 219 4 0 chr9 34050855 34051133 -108220311 - L1PB1 LINE L1 -2299 3847 3569 28 0 0 0 chr9 34051199 34051227 -108220217 + AT_rich Low_complexity Low_complexity 1 28 0 373 328 61 44 chr9 34051303 34051599 -108219845 + L1 LINE L1 2840 3140 -3006 541 278 42 42 chr9 34051931 34052122 -108219322 + MIR SINE MIR 71 261 -1 1898 271 107 40 chr9 34052624 34053353 -108218091 + MER69B DNA AcHobo 17 794 -432 1847 169 49 3 chr9 34053353 34053678 -108217766 - MER2 DNA MER2_type 0 345 6 999 205 63 24 chr9 34053690 34054021 -108217423 + MER69B DNA AcHobo 801 1144 -82 493 232 65 0 chr9 34054077 34054215 -108217229 + L1M4 LINE L1 840 986 -5556 286 236 32 32 chr9 34054860 34054983 -108216461 - MER113 DNA MER1_type? -386 135 13 3457 76 0 9 chr9 34055450 34055898 -108215546 - MLT2A1 LTR ERVL 0 444 1 196 290 16 16 chr9 34056206 34056268 -108215176 + MIR3 SINE MIR 133 194 -14 1649 208 0 26 chr9 34057346 34057654 -108213790 - AluJo SINE Alu -12 300 1 241 282 181 13 chr9 34057855 34058004 -108213440 - MIR SINE MIR -3 259 86 2806 123 17 0 chr9 34058184 34058598 -108212846 - MSTA LTR MaLR 0 428 8 409 283 29 43 chr9 34060585 34060723 -108210721 + MER97b DNA MER1_type? 3 138 -915 770 284 139 23 chr9 34060798 34061186 -108210258 + L1ME LINE L1 61 493 -5577 405 268 95 48 chr9 34061303 34061471 -108209973 + L1ME LINE L1 272 447 -5623 1309 256 54 55 chr9 34061473 34062124 -108209320 + L1ME LINE L1 476 1118 -4962 1857 173 3 10 chr9 34062124 34062437 -108209007 + AluJb SINE Alu 1 311 -1 1309 256 54 55 chr9 34062437 34062475 -108208969 + L1ME LINE L1 1118 1155 -4925 2383 76 3 0 chr9 34062562 34062864 -108208580 + AluY SINE Alu 1 303 -8 4154 121 13 1 chr9 34062872 34063550 -108207894 - L1P LINE L1 -2804 3342 2657 2243 97 0 6 chr9 34063550 34063869 -108207575 + L1PA8 LINE L1 5849 6166 -6 865 266 37 32 chr9 34063871 34064273 -108207171 + L1ME LINE L1 1244 1647 -4614 2033 136 0 13 chr9 34064281 34064583 -108206861 + AluSg SINE Alu 1 298 -12 234 160 40 0 chr9 34064689 34064739 -108206705 + L1MC1 LINE L1 6269 6320 -13 405 187 13 0 chr9 34064768 34064843 -108206601 + AluJb SINE Alu 50 125 -187 262 198 0 0 chr9 34064872 34064943 -108206501 + L1ME LINE L1 2060 2170 -3951 4605 84 9 8 chr9 34064953 34065599 -108205845 + L1PA11 LINE L1 5328 5974 -200 288 346 53 30 chr9 34065981 34066114 -108205330 + L2 LINE L2 3136 3271 -1 360 360 90 9 chr9 34067284 34067517 -108203927 + MIR SINE MIR 5 256 -6 402 327 87 19 chr9 34071407 34071719 -108199725 + L1M4 LINE L1 4491 4823 -1323 180 147 0 29 chr9 34072330 34072364 -108199080 + MER5A DNA MER1_type 128 160 -29 354 237 54 11 chr9 34072427 34072520 -108198924 - L2 LINE L2 -2 3311 3215 358 295 0 27 chr9 34072586 34072698 -108198746 - L2 LINE L2 -280 3033 2925 307 224 0 0 chr9 34072700 34072758 -108198686 + MER5B DNA MER1_type 119 176 -2 1234 118 0 5 chr9 34073320 34073506 -108197938 + L1PB4 LINE L1 5963 6147 -9 1766 134 47 27 chr9 34074390 34074688 -108196756 - AluSx SINE Alu -8 304 1 643 311 39 11 chr9 34074849 34075132 -108196312 + L2 LINE L2 1751 2041 -1273 23340 40 4 3 chr9 34075309 34078993 -108192451 - L1PA4 LINE L1 0 6155 2468 11011 46 1 1 chr9 34078993 34080376 -108191068 + L1PA4 LINE L1 1110 2492 -3654 2511 243 51 20 chr9 34082679 34084042 -108187402 + L1ME2 LINE L1 4684 6089 -75 24 32 0 0 chr9 34084047 34084078 -108187366 + AT_rich Low_complexity Low_complexity 1 31 0 233 231 154 29 chr9 34084089 34084193 -108187251 + L1MC5 LINE L1 7799 7915 -46 2591 33 3 0 chr9 34085900 34086203 -108185241 - AluY SINE Alu -7 304 1 323 59 20 0 chr9 34086205 34086256 -108185188 - L1PB3 LINE L1 0 6154 6103 5697 104 23 47 chr9 34086924 34087780 -108183664 - L1PB3 LINE L1 0 6154 5317 2002 147 10 0 chr9 34087780 34088073 -108183371 - AluSx SINE Alu -16 296 1 5697 104 23 47 chr9 34088073 34088201 -108183243 - L1PB3 LINE L1 -837 5317 5187 8376 184 45 29 chr9 34088201 34090252 -108181192 + L1PB3 LINE L1 3102 5185 -961 25 0 0 0 chr9 34090428 34090453 -108180991 + AT_rich Low_complexity Low_complexity 1 25 0 363 251 57 80 chr9 34091343 34091518 -108179926 - HAL1 LINE L1 -597 1910 1740 1181 261 51 39 chr9 34091555 34091940 -108179504 + MLT1D LTR MaLR 127 505 0 996 229 46 23 chr9 34091941 34092247 -108179197 + MLT1D-int LTR MaLR 2 314 -1057 1181 203 54 0 chr9 34092455 34092716 -108178728 + MLT1D-int LTR MaLR 332 606 -765 666 258 41 5 chr9 34092851 34093045 -108178399 + MLT1D-int LTR MaLR 664 864 -507 447 186 10 21 chr9 34093188 34093285 -108178159 - L1MC5 LINE L1 -734 7227 7132 1991 144 0 0 chr9 34093318 34093603 -108177841 + AluSx SINE Alu 1 285 -27 605 255 91 12 chr9 34093613 34093856 -108177588 - LTR37B LTR ERV1 -8 460 199 1761 181 0 0 chr9 34093982 34094275 -108177169 - AluJb SINE Alu -19 293 1 520 290 100 24 chr9 34094909 34095251 -108176193 + LTR1 LTR ERV1 28 386 -440 391 195 110 17 chr9 34095408 34095526 -108175918 + LTR28 LTR ERV1 446 574 -446 292 211 58 153 chr9 34095538 34095728 -108175716 + LTR28 LTR ERV1 848 1019 -1 1106 282 272 10 chr9 34096149 34096653 -108174791 + L2 LINE L2 2001 2636 -678 442 228 73 16 chr9 34096665 34096788 -108174656 - LTR33 LTR ERVL -14 507 378 475 288 88 54 chr9 34096827 34097067 -108174377 - LTR33 LTR ERVL -237 284 37 769 296 112 41 chr9 34097069 34097732 -108173712 + L2 LINE L2 2619 3312 -1 249 83 0 0 chr9 34099065 34099101 -108172343 + (CA)n Simple_repeat Simple_repeat 1 36 0 2253 95 46 62 chr9 34100411 34100629 -108170815 - THE1B LTR MaLR -2 362 150 2125 124 0 0 chr9 34100629 34100941 -108170503 + AluSc SINE Alu 1 312 0 2253 95 46 62 chr9 34100941 34101089 -108170355 - THE1B LTR MaLR -214 150 1 2084 166 8 21 chr9 34101131 34101511 -108169933 + THE1C LTR MaLR 1 375 0 321 292 79 54 chr9 34101966 34102471 -108168973 - L1ME3A LINE L1 -218 5952 5428 29 28 0 0 chr9 34102528 34102564 -108168880 + AT_rich Low_complexity Low_complexity 1 36 0 389 356 60 20 chr9 34102632 34102882 -108168562 - HAL1 LINE L1 -833 1674 1415 649 281 33 53 chr9 34103095 34103114 -108168330 - HAL1 LINE L1 0 2507 2489 1524 124 4 26 chr9 34103114 34103347 -108168097 + AluJo SINE Alu 85 312 0 649 281 33 53 chr9 34103347 34103626 -108167818 - HAL1 LINE L1 -18 2489 2215 265 250 158 50 chr9 34103640 34103656 -108167788 + MLT1E1 LTR MaLR 1 14 -579 2029 160 30 28 chr9 34103656 34104018 -108167426 + THE1B LTR MaLR 1 363 -1 265 250 158 50 chr9 34104018 34104121 -108167323 + MLT1E1 LTR MaLR 14 133 -460 * 1153 235 28 7 chr9 34104117 34104524 -108166920 + MLT1E1 LTR MaLR 102 653 -1 1021 266 166 14 chr9 34104693 34105193 -108166251 - HAL1 LINE L1 -544 1963 1388 22 56 0 0 chr9 34105262 34105298 -108166146 + AT_rich Low_complexity Low_complexity 1 36 0 211 242 0 65 chr9 34106402 34106464 -108164980 - MIR3 SINE MIR -49 159 102 1048 228 22 14 chr9 34106465 34106882 -108164562 + MER31A LTR ERV1 1 476 -9 248 299 232 31 chr9 34107882 34108076 -108163368 - L3b LINE CR1 -146 1437 1205 1878 247 116 14 chr9 34108172 34108706 -108162738 + MLT1G LTR MaLR 22 571 -19 204 118 29 0 chr9 34108750 34108784 -108162660 + (CTTG)n Simple_repeat Simple_repeat 1 35 0 22 56 0 0 chr9 34109203 34109239 -108162205 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr9 34109996 34110027 -108161417 + AT_rich Low_complexity Low_complexity 1 31 0 1595 169 35 17 chr9 34110382 34110672 -108160772 - AluJb SINE Alu -17 295 1 23 68 0 0 chr9 34110916 34110960 -108160484 + AT_rich Low_complexity Low_complexity 1 44 0 308 259 87 43 chr9 34111451 34111636 -108159808 + L1M4 LINE L1 5140 5332 -814 23 0 0 0 chr9 34111919 34111942 -108159502 + AT_rich Low_complexity Low_complexity 1 23 0 1506 22 38 0 chr9 34112044 34112227 -108159217 + L1PA2 LINE L1 5965 6154 -1 21 36 0 0 chr9 34112228 34112256 -108159188 + AT_rich Low_complexity Low_complexity 1 28 0 404 300 40 0 chr9 34112427 34112577 -108158867 + HAL1b LINE L1 756 911 -437 4557 67 40 2 chr9 34112805 34113433 -108158011 + L1PA10 LINE L1 5516 6167 -1 509 178 85 23 chr9 34113439 34113568 -108157876 + LTR48B LTR ERV1 426 562 -82 415 316 172 21 chr9 34113897 34114182 -108157262 - L2 LINE L2 -4 3309 2982 2294 157 46 2 chr9 34115543 34115958 -108155486 + Tigger3b DNA MER2_type 1 433 -798 893 264 94 41 chr9 34116701 34117064 -108154380 + MLT1J LTR MaLR 89 470 -41 2282 94 0 49 chr9 34118144 34118473 -108152971 - AluSq SINE Alu 0 313 1 249 303 26 13 chr9 34119700 34119776 -108151668 + L2 LINE L2 3163 3239 -33 4420 167 20 57 chr9 34119826 34121406 -108150038 - L1MA9 LINE L1 -1 6311 4793 518 251 21 5 chr9 34121427 34121618 -108149826 - L1MA9 LINE L1 -2953 3193 3000 1748 209 27 84 chr9 34122603 34123092 -108148352 + MLT2B1 LTR ERVL 1 461 -59 345 93 0 0 chr9 34123092 34123146 -108148298 + (GA)n Simple_repeat Simple_repeat 1 54 0 231 36 0 0 chr9 34123146 34123174 -108148270 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 171 0 0 chr9 34123177 34123218 -108148226 + MLT2D LTR ERVL 374 414 0 740 155 0 0 chr9 34123826 34123942 -108147502 + FLAM_C SINE Alu 3 118 -15 31389 69 8 2 chr9 34123960 34129598 -108141846 + L1P2 LINE L1 1 5691 -463 241 242 174 30 chr9 34129610 34129742 -108141702 + L1ME LINE L1 5589 5739 -425 522 245 86 7 chr9 34130016 34130167 -108141277 + MIR SINE MIR 97 259 -3 511 299 72 6 chr9 34131161 34131328 -108140116 - MER5B DNA MER1_type 0 178 1 509 314 48 23 chr9 34131947 34132366 -108139078 + HAL1b LINE L1 285 589 -759 225 0 0 0 chr9 34132604 34132629 -108138815 + (TC)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr9 34132628 34132652 -108138792 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 429 186 0 0 chr9 34132723 34132852 -108138592 + (TA)n Simple_repeat Simple_repeat 2 130 0 478 298 27 5 chr9 34133710 34133898 -108137546 + L1ME LINE L1 5627 5818 -303 1776 167 56 14 chr9 34134407 34134767 -108136677 - THE1C LTR MaLR 0 375 1 2677 154 29 3 chr9 34136201 34136725 -108134719 + L1MC/D LINE L1 5184 5722 -611 1036 275 175 10 chr9 34136725 34137143 -108134301 - MLT1H LTR MaLR -35 514 28 978 207 88 128 chr9 34137591 34138012 -108133432 + MLT1C LTR MaLR 95 460 -7 29 0 0 0 chr9 34138293 34138322 -108133122 + AT_rich Low_complexity Low_complexity 1 29 0 221 217 0 14 chr9 34138917 34138986 -108132458 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 582 240 31 158 chr9 34139485 34139998 -108131446 + L1ME3 LINE L1 5491 5938 -224 899 120 0 125 chr9 34140224 34140408 -108131036 - MER1B DNA MER1_type 0 339 179 379 197 0 0 chr9 34140422 34140483 -108130961 - MER1B DNA MER1_type -276 61 1 21 0 0 0 chr9 34141686 34141707 -108129737 + AT_rich Low_complexity Low_complexity 1 21 0 230 344 120 37 chr9 34141934 34142335 -108129109 - L2 LINE L2 -26 3246 2813 385 193 50 107 chr9 34142605 34142745 -108128699 + MIR SINE MIR 118 249 -13 428 227 0 11 chr9 34143068 34143156 -108128288 + MER94 DNA DNA 1 87 -47 266 236 182 45 chr9 34143652 34143762 -108127682 - L2 LINE L2 -1 3312 3188 495 348 150 9 chr9 34144889 34145518 -108125926 - L2 LINE L2 0 3272 2550 2048 101 0 11 chr9 34146228 34146505 -108124939 + AluSx SINE Alu 32 305 -7 2324 248 94 27 chr9 34146953 34148279 -108123165 - L1ME3A LINE L1 -74 6165 4744 3188 55 0 0 chr9 34148327 34148729 -108122715 - L1PA5 LINE L1 -1222 4924 4523 7136 39 23 0 chr9 34148735 34149927 -108121517 + L1PA5 LINE L1 4939 6150 -4 504 271 65 19 chr9 34149940 34150095 -108121349 + FRAM SINE Alu 1 155 -21 440 310 80 0 chr9 34150104 34150304 -108121140 + L1M4 LINE L1 4027 4242 -1904 586 160 134 8 chr9 34150326 34150445 -108120999 + AluJo SINE Alu 1 134 -178 1097 270 60 64 chr9 34150466 34151476 -108119968 - L1MEc LINE L1 -3212 3003 2023 1780 137 10 10 chr9 34151543 34151849 -108119595 - AluY SINE Alu -4 307 2 1638 137 65 42 chr9 34151977 34152283 -108119161 - THE1B LTR MaLR -51 313 1 247 383 19 32 chr9 34153026 34153180 -108118264 - MIR3 SINE MIR -24 184 33 6122 170 49 27 chr9 34153691 34155349 -108116095 + L1P3 LINE L1 2 1721 -4734 24083 32 5 0 chr9 34155455 34159186 -108112258 + L1PA3 LINE L1 2435 6152 -3 1075 67 176 6 chr9 34159219 34159283 -108112161 + LTR13 LTR ERVK 622 674 -333 213 39 0 0 chr9 34159283 34159309 -108112135 + (TC)n Simple_repeat Simple_repeat 1 26 0 1075 67 176 6 chr9 34159309 34159409 -108112035 + LTR13 LTR ERVK 674 814 -193 1488 81 9 5 chr9 34159542 34159753 -108111691 + LTR13 LTR ERVK 796 1007 0 4686 193 13 3 chr9 34159753 34160198 -108111246 - L1P4 LINE L1 -350 5816 5377 2057 99 46 30 chr9 34160198 34160502 -108110942 - AluSq SINE Alu -4 309 1 4686 193 13 3 chr9 34160502 34161551 -108109893 - L1P4 LINE L1 -789 5377 4307 1565 205 8 31 chr9 34161550 34161906 -108109538 + L1P4 LINE L1 3955 4302 -1844 * 542 294 147 35 chr9 34162418 34162786 -108108658 + MLT1I LTR MaLR 1 409 0 3992 125 24 0 chr9 34163927 34164545 -108106899 - MER41B LTR ERV1 0 635 3 788 223 0 0 chr9 34165310 34165458 -108105986 - MER58A DNA MER1_type -34 190 43 358 282 17 34 chr9 34165831 34165948 -108105496 + MIR SINE MIR 117 231 -31 466 306 69 26 chr9 34165956 34166188 -108105256 - MIR SINE MIR -2 260 19 2038 122 3 7 chr9 34166538 34166825 -108104619 - AluSx SINE Alu -26 286 1 189 293 71 91 chr9 34168301 34168400 -108103044 + MIR SINE MIR 39 135 -73 2651 86 103 2 chr9 34168430 34168837 -108102607 - LTR7 LTR ERV1 -2 448 1 2348 108 45 13 chr9 34168837 34169217 -108102227 - HERVH LTR ERV1 0 7713 7322 1327 154 0 5 chr9 34169215 34169436 -108102008 - HERVH LTR ERV1 -1894 5819 5600 * 4441 135 1 0 chr9 34169437 34170098 -108101346 - HERVH LTR ERV1 -2564 5149 4488 2602 108 17 5 chr9 34170100 34170507 -108100937 - HERVH LTR ERV1 -3720 3993 3582 15607 152 8 18 chr9 34170616 34173470 -108097974 + L1P LINE L1 1725 4549 -1597 2658 10 0 7 chr9 34173568 34173864 -108097580 - AluYa5 SINE Alu 0 311 18 444 204 66 51 chr9 34174057 34174194 -108097250 + MER104 DNA Tc2 16 154 -26 193 343 14 14 chr9 34176908 34176978 -108094466 - L2 LINE L2 -6 3307 3238 539 231 85 36 chr9 34177188 34177435 -108094009 + MLT1J LTR MaLR 208 466 -45 5098 159 21 15 chr9 34177653 34179459 -108091985 + L1MA7 LINE L1 4478 6287 -4 929 291 65 54 chr9 34179633 34180062 -108091382 - L2 LINE L2 -18 3295 2862 2144 98 63 0 chr9 34181728 34182075 -108089369 - HERVH LTR ERV1 -4205 3508 3140 * 14534 95 29 23 chr9 34182069 34184410 -108087034 - HERVH LTR ERV1 -4726 2987 633 428 254 18 0 chr9 34184898 34185008 -108086436 - MER63 DNA MER1_type -273 788 677 640 331 54 15 chr9 34185122 34185454 -108085990 - HERV16 LTR ERVL -2776 2220 1876 291 218 58 11 chr9 34185582 34185669 -108085775 - LTR16A LTR ERVL -86 364 274 4461 164 28 32 chr9 34186306 34187212 -108084232 - MER49 LTR ERV1 -21 902 1 206 381 44 60 chr9 34189217 34189582 -108081862 + L2 LINE L2 920 1278 -2036 415 361 112 33 chr9 34189701 34190094 -108081350 + L2 LINE L2 2542 2965 -349 480 288 62 87 chr9 34190865 34191065 -108080379 + L2 LINE L2 2552 2743 -571 204 97 0 0 chr9 34191065 34191096 -108080348 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 480 288 62 87 chr9 34191096 34191204 -108080240 + L2 LINE L2 2743 2852 -462 2168 125 33 31 chr9 34191346 34191706 -108079738 - THE1B LTR MaLR -3 361 1 382 344 48 4 chr9 34191762 34192068 -108079376 - L1MEd LINE L1 -934 1556 1148 335 191 22 49 chr9 34192230 34192413 -108079031 + (TA)n Simple_repeat Simple_repeat 2 179 0 238 180 80 10 chr9 34192381 34192481 -108078963 + (CATAT)n Simple_repeat Simple_repeat 4 110 0 * 478 281 61 54 chr9 34193620 34193898 -108077546 - L2 LINE L2 -686 2628 2349 222 118 0 0 chr9 34194888 34194922 -108076522 + (A)n Simple_repeat Simple_repeat 1 34 0 27 0 0 0 chr9 34195475 34195502 -108075942 + AT_rich Low_complexity Low_complexity 1 27 0 269 375 35 28 chr9 34195507 34195651 -108075793 + L2 LINE L2 2652 2796 -518 230 282 39 26 chr9 34195650 34195728 -108075716 - L2 LINE L2 -5 3308 3230 * 234 204 19 0 chr9 34196713 34196767 -108074677 + (CATAT)n Simple_repeat Simple_repeat 4 58 0 350 215 10 149 chr9 34197753 34197948 -108073496 - L2 LINE L2 -141 3172 3005 187 324 54 0 chr9 34198569 34198643 -108072801 + MIR SINE MIR 66 143 -65 59 15 0 0 chr9 34200771 34200837 -108070607 + AT_rich Low_complexity Low_complexity 1 66 0 1859 157 62 37 chr9 34200973 34201514 -108069930 + MLT2A2 LTR ERVL 1 554 0 2747 206 23 37 chr9 34201534 34201638 -108069806 + LTR9B LTR ERV1 7 111 -533 252 0 0 0 chr9 34201638 34201666 -108069778 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4525 58 7 0 chr9 34201666 34202234 -108069210 - L1PA6 LINE L1 -18 6136 5565 2747 206 23 37 chr9 34202234 34202775 -108068669 + LTR9B LTR ERV1 109 644 0 9553 93 15 4 chr9 34202775 34204146 -108067298 + HERVL LTR ERVL 11 1397 -4257 603 96 11 0 chr9 34204146 34204240 -108067204 + MLT2A2 LTR ERVL 359 453 0 2187 134 14 6 chr9 34204979 34205330 -108066114 - L1PA16 LINE L1 -3 6163 5810 4990 51 5 8 chr9 34205330 34205977 -108065467 + LTR13 LTR ERVK 3 647 -360 16700 64 55 4 chr9 34205982 34208360 -108063084 + L1P LINE L1 1 2501 -3645 18536 134 33 49 chr9 34308487 34311930 -107959514 - L1P LINE L1 -2757 3389 1 2328 74 3 17 chr9 34312634 34312931 -107958513 + AluY SINE Alu 1 293 -18 270 311 137 28 chr9 34313641 34314199 -107957245 - L2 LINE L2 -109 3163 2545 766 215 113 20 chr9 34314553 34314748 -107956696 - MER58C DNA MER1_type 0 215 3 2410 90 0 0 chr9 34314859 34315159 -107956285 - AluSg SINE Alu -10 300 1 181 267 111 11 chr9 34315559 34315649 -107955795 + MIR SINE MIR 116 214 -48 924 267 8 19 chr9 34315757 34316015 -107955429 + MIR SINE MIR 5 259 -3 353 233 22 0 chr9 34317336 34317426 -107954018 + L2 LINE L2 3221 3312 -1 248 294 0 0 chr9 34318169 34318237 -107953207 - L1MC4 LINE L1 -61 7981 7914 1573 120 5 5 chr9 34318684 34318901 -107952543 - AluSx SINE Alu -95 217 1 184 323 114 19 chr9 34319239 34319397 -107952047 + L2 LINE L2 3132 3304 -9 341 344 109 5 chr9 34321029 34321250 -107950194 + MIR SINE MIR 8 251 -11 7306 70 157 4 chr9 34321533 34322593 -107948851 + MER11B LTR ERVK 1 1222 -14 2240 123 0 0 chr9 34323994 34324302 -107947142 + AluSx SINE Alu 1 308 -4 830 268 213 17 chr9 34325235 34325657 -107945787 + L2 LINE L2 2809 3313 0 257 283 53 18 chr9 34325653 34325766 -107945678 - MIR3 SINE MIR -8 200 84 * 1636 183 0 0 chr9 34327409 34327683 -107943761 - AluJo SINE Alu -30 282 9 252 264 23 23 chr9 34328089 34328176 -107943268 + L1P LINE L1 5339 5425 -729 1312 158 67 16 chr9 34329169 34329422 -107942022 - L1MD3 LINE L1 -20 7975 7710 185 358 74 0 chr9 34329920 34330015 -107941429 + MIR3 SINE MIR 7 108 -100 310 323 159 20 chr9 34330017 34330218 -107941226 - MIR SINE MIR 0 262 34 554 134 19 14 chr9 34330275 34330482 -107940962 + AluSx SINE Alu 3 303 -6 2110 126 6 9 chr9 34330607 34331043 -107940401 - L1P4 LINE L1 -582 5579 5144 1485 198 42 66 chr9 34331046 34331424 -107940020 - L1M4 LINE L1 -6157 385 17 189 294 0 0 chr9 34332278 34332329 -107939115 + L2 LINE L2 3017 3067 -205 1054 213 19 5 chr9 34332420 34332631 -107938813 + MER20 DNA MER1_type 2 215 -4 2667 110 62 24 chr9 34335256 34335633 -107935811 - Tigger3(Golem) DNA MER2_type -301 2727 2327 1906 143 7 29 chr9 34335633 34335940 -107935504 + AluJo SINE Alu 1 300 -12 2667 110 62 24 chr9 34335940 34336027 -107935417 - Tigger3(Golem) DNA MER2_type -701 2327 2245 21 36 0 0 chr9 34336140 34336168 -107935276 + AT_rich Low_complexity Low_complexity 1 28 0 334 256 250 51 chr9 34336526 34336682 -107934762 + MER5A DNA MER1_type 3 189 0 757 252 65 55 chr9 34336786 34337096 -107934348 - MER102b DNA MER1_type -2 339 27 520 292 23 14 chr9 34338154 34338374 -107933070 - MIR SINE MIR -32 230 5 216 200 0 0 chr9 34339262 34339307 -107932137 + A-rich Low_complexity Low_complexity 4 48 0 888 204 82 15 chr9 34339995 34340191 -107931253 + MER63A DNA MER1_type 2 210 0 244 219 78 16 chr9 34340215 34340279 -107931165 - MIR3 SINE MIR -51 157 90 327 309 32 40 chr9 34340581 34340707 -107930737 + L2 LINE L2 3188 3312 -1 2307 161 105 8 chr9 34341638 34342115 -107929329 + Charlie1b DNA MER1_type 1 523 0 21 0 0 0 chr9 34342864 34342885 -107928559 + GC_rich Low_complexity Low_complexity 1 21 0 933 134 70 6 chr9 34344754 34344925 -107926519 - THE1C LTR MaLR 0 375 194 233 161 161 0 chr9 34345277 34345333 -107926111 - THE1C LTR MaLR -319 109 45 3827 134 28 46 chr9 34347250 34347597 -107923847 + LTR26 LTR ERV1 1 334 -269 2279 64 58 3 chr9 34347597 34347892 -107923552 - AluY SINE Alu 0 311 1 3827 134 28 46 chr9 34347892 34348156 -107923288 + LTR26 LTR ERV1 334 601 -2 5065 58 6 2 chr9 34348260 34348901 -107922543 + L1P3 LINE L1 3460 4103 -2043 4234 41 6 8 chr9 34348898 34349411 -107922033 + L1P3 LINE L1 5309 5820 -334 * 1662 224 67 9 chr9 34350079 34350669 -107920775 - MER82 DNA MER2_type 0 653 2 1168 184 265 84 chr9 34351748 34352233 -107919211 - MLT1E LTR MaLR 0 593 2 1702 182 0 10 chr9 34352253 34352549 -107918895 - AluJo SINE Alu -19 293 1 212 274 143 12 chr9 34354209 34354293 -107917151 - MER5A DNA MER1_type 0 189 95 430 250 92 37 chr9 34355142 34355306 -107916138 + MIR SINE MIR 59 231 -31 849 254 56 20 chr9 34355407 34355659 -107915785 - MIR SINE MIR 0 262 2 2448 223 211 53 chr9 34355809 34357270 -107914174 + HAL1 LINE L1 678 2370 -137 2271 124 0 3 chr9 34358273 34358580 -107912864 + AluSx SINE Alu 1 306 -6 594 187 8 67 chr9 34360386 34360520 -107910924 - MER5B DNA MER1_type -52 126 1 294 298 12 12 chr9 34360575 34360659 -107910785 - MER5A DNA MER1_type -70 119 36 21 0 0 0 chr9 34360726 34360747 -107910697 + AT_rich Low_complexity Low_complexity 1 21 0 220 342 33 0 chr9 34361125 34361245 -107910199 + MIR SINE MIR 138 261 -1 1190 184 27 12 chr9 34362164 34362420 -107909024 - AluSq SINE Alu -24 289 30 1646 191 0 4 chr9 34362423 34362696 -107908748 - AluJb SINE Alu -40 272 1 573 257 116 69 chr9 34362699 34362783 -107908661 - L1MEc LINE L1 -4757 1639 1560 1512 170 20 37 chr9 34362783 34363077 -107908367 + AluJb SINE Alu 1 289 -23 573 257 116 69 chr9 34363077 34363483 -107907961 - L1MEc LINE L1 -4836 1560 1126 1184 214 40 11 chr9 34363487 34363762 -107907682 + LTR40c LTR ERVL 183 465 0 252 295 135 13 chr9 34363829 34363985 -107907459 + HERVL40 LTR ERVL 104 278 -5252 662 267 65 19 chr9 34364046 34364404 -107907040 + HERVL40 LTR ERVL 958 1394 -4136 824 138 27 138 chr9 34364584 34364655 -107906789 + MER20 DNA MER1_type 1 78 -141 2181 98 0 53 chr9 34364655 34364973 -107906471 - AluSq SINE Alu -12 301 1 824 138 27 138 chr9 34364973 34365126 -107906318 + MER20 DNA MER1_type 78 200 -19 4068 266 62 46 chr9 34365489 34366755 -107904689 + HERVL40 LTR ERVL 2663 3948 -1582 1761 238 29 13 chr9 34366977 34367360 -107904084 + HERVL40 LTR ERVL 5140 5528 -2 604 197 24 16 chr9 34367369 34367496 -107903948 + LTR40c LTR ERVL 8 135 -330 301 200 7 89 chr9 34367499 34367634 -107903810 + L1MC5 LINE L1 7744 7867 -94 1297 194 58 20 chr9 34367654 34367948 -107903496 + LTR40c LTR ERVL 161 465 0 31 0 0 0 chr9 34368106 34368137 -107903307 + AT_rich Low_complexity Low_complexity 1 31 0 301 236 128 68 chr9 34368194 34368342 -107903102 - L1MC5 LINE L1 -75 7886 7730 2503 167 19 14 chr9 34369088 34369514 -107901930 - MSTA LTR MaLR 0 428 1 509 241 13 102 chr9 34369540 34369776 -107901668 - MER58C DNA MER1_type 0 215 1 850 285 4 48 chr9 34369779 34370049 -107901395 + MIR SINE MIR 5 262 0 320 0 25 0 chr9 34370208 34370248 -107901196 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 832 194 50 6 chr9 34370378 34370558 -107900886 - AluSx SINE Alu -121 191 4 318 275 60 39 chr9 34370594 34370776 -107900668 - L1MC4a LINE L1 -1544 6264 6079 436 229 84 0 chr9 34370844 34370975 -107900469 - L1MC4a LINE L1 -1837 5971 5830 462 191 161 9 chr9 34370990 34371162 -107900282 - L1MC4a LINE L1 -403 5775 5568 2841 90 5 3 chr9 34371238 34371606 -107899838 - L1PB1 LINE L1 -1 6150 5782 203 167 0 0 chr9 34371606 34371648 -107899796 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 3743 145 11 16 chr9 34371648 34371776 -107899668 - L1PB1 LINE L1 -360 5791 5664 2158 113 0 20 chr9 34371776 34372076 -107899368 - AluSq SINE Alu -15 298 5 3743 145 11 16 chr9 34372076 34372608 -107898836 - L1PB1 LINE L1 -487 5664 5139 2151 121 0 10 chr9 34372608 34372913 -107898531 - AluSx SINE Alu -10 302 1 3743 145 11 16 chr9 34372913 34373244 -107898200 - L1PB1 LINE L1 -1012 5139 4808 845 246 159 30 chr9 34373263 34373666 -107897778 - LTR50 LTR ERVL -332 463 9 4635 136 51 3 chr9 34373707 34374448 -107896996 - L1MA8 LINE L1 -4 6287 5511 344 303 10 0 chr9 34374454 34374553 -107896891 - L1MC4a LINE L1 -2247 5561 5462 328 291 223 0 chr9 34374938 34375086 -107896358 - MER5A DNA MER1_type 0 189 9 891 237 22 72 chr9 34376331 34376609 -107894835 - MLT1B LTR MaLR -4 386 123 608 163 0 116 chr9 34376607 34376754 -107894690 - MLT2B2 LTR ERVL -132 383 254 * 188 388 12 0 chr9 34376818 34376898 -107894546 + MIR SINE MIR 40 120 -142 22 35 0 0 chr9 34376913 34376942 -107894502 + AT_rich Low_complexity Low_complexity 1 29 0 2198 104 3 3 chr9 34376951 34377248 -107894196 + AluSq SINE Alu 1 297 -16 1573 164 98 33 chr9 34377416 34377751 -107893693 + MLT1A1 LTR MaLR 3 359 -6 1333 134 193 8 chr9 34377851 34377955 -107893489 + AluJo SINE Alu 2 86 -216 218 54 0 27 chr9 34377955 34377992 -107893452 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1333 134 193 8 chr9 34377992 34378126 -107893318 + AluJo SINE Alu 86 284 -18 284 304 65 22 chr9 34378471 34378609 -107892835 - MLT1K LTR MaLR 0 588 445 229 217 183 0 chr9 34379279 34379339 -107892105 + MER103 DNA DNA 1 71 -95 217 207 216 27 chr9 34379660 34379771 -107891673 - MER5B DNA MER1_type -29 149 18 2146 113 7 3 chr9 34380051 34380343 -107891101 + AluSx SINE Alu 1 293 -19 1485 135 28 28 chr9 34380422 34380704 -107890740 - THE1C LTR MaLR 0 375 94 218 204 0 0 chr9 34380752 34380801 -107890643 + T-rich Low_complexity Low_complexity 1 49 0 269 284 177 0 chr9 34380920 34381061 -107890383 - MIR SINE MIR -2 260 95 199 211 14 14 chr9 34381630 34381701 -107889743 + (TA)n Simple_repeat Simple_repeat 2 72 0 531 253 150 16 chr9 34381711 34381964 -107889480 - L2 LINE L2 -1218 2096 1810 22 0 0 0 chr9 34382168 34382190 -107889254 + AT_rich Low_complexity Low_complexity 1 22 0 1140 176 47 4 chr9 34383583 34383838 -107887606 - L1MD3 LINE L1 0 7995 7730 2102 111 7 7 chr9 34383844 34384142 -107887302 - AluSg SINE Alu -12 298 1 2644 84 3 6 chr9 34384897 34385253 -107886191 + THE1A LTR MaLR 1 355 0 2650 177 71 46 chr9 34385402 34386323 -107885121 + L1MDb LINE L1 961 1935 -4471 474 275 180 0 chr9 34386428 34386606 -107884838 + MIR SINE MIR 34 243 -19 690 165 16 0 chr9 34387510 34387631 -107883813 + AluJo SINE Alu 64 186 -126 355 118 191 0 chr9 34387632 34387700 -107883744 + AluS SINE Alu 220 300 -2 2387 45 42 0 chr9 34388959 34389247 -107882197 - AluY SINE Alu -11 300 1 654 313 40 4 chr9 34390040 34390267 -107881177 - MIR SINE MIR 0 262 28 876 98 32 0 chr9 34391164 34391287 -107880157 + AluJo SINE Alu 183 309 -3 211 319 161 46 chr9 34391652 34391975 -107879469 - L2 LINE L2 -353 2961 2602 347 305 107 0 chr9 34392557 34392688 -107878756 - MIR SINE MIR 0 262 118 290 266 51 25 chr9 34392703 34392782 -107878662 + MIR SINE MIR 27 107 -155 1813 198 0 0 chr9 34392952 34393245 -107878199 + AluJb SINE Alu 2 294 -18 191 329 134 0 chr9 34393248 34393330 -107878114 - MIR SINE MIR -71 137 45 267 232 0 29 chr9 34393449 34393518 -107877926 + MLT1J1 LTR MaLR 15 81 -365 289 257 97 70 chr9 34393527 34393761 -107877683 + MLT1J2 LTR MaLR 120 371 -79 * 315 205 107 8 chr9 34393758 34393880 -107877564 + MLT1J2 LTR MaLR 317 450 0 286 148 0 115 chr9 34394797 34394858 -107876586 - MIR SINE MIR 0 262 209 1170 205 89 17 chr9 34394858 34395151 -107876293 - MER58B DNA MER1_type 0 341 28 434 202 0 22 chr9 34395153 34395242 -107876202 - MIR SINE MIR -81 181 95 1970 157 23 0 chr9 34395544 34395843 -107875601 + AluSx SINE Alu 1 306 -6 258 218 18 0 chr9 34396210 34396265 -107875179 + L2 LINE L2 3217 3272 0 442 256 94 77 chr9 34396961 34397034 -107874410 + MLT2C1 LTR ERVL 1 71 -326 687 192 40 7 chr9 34397034 34397185 -107874259 + MLT1E1 LTR MaLR 149 304 -350 442 256 94 77 chr9 34397185 34397312 -107874132 + MLT2C1 LTR ERVL 71 357 -40 22 70 0 0 chr9 34397419 34397462 -107873982 + AT_rich Low_complexity Low_complexity 1 43 0 216 97 0 0 chr9 34397462 34397493 -107873951 + (CA)n Simple_repeat Simple_repeat 2 32 0 2223 114 3 0 chr9 34397854 34398152 -107873292 - AluSg SINE Alu -11 299 1 1498 210 30 49 chr9 34398342 34398701 -107872743 - L1M4 LINE L1 -1200 4946 4597 2084 137 3 0 chr9 34398701 34398994 -107872450 + AluSx SINE Alu 1 294 -18 1498 210 30 49 chr9 34398994 34399101 -107872343 - L1M4 LINE L1 -1549 4597 4489 1349 202 165 40 chr9 34399102 34399604 -107871840 - MLT1F1 LTR MaLR -1 566 6 405 189 63 0 chr9 34399607 34399718 -107871726 - L1M4 LINE L1 -1650 4496 4379 1113 169 0 6 chr9 34399728 34399900 -107871544 - AluJb SINE Alu -8 304 134 2039 143 0 7 chr9 34399900 34400207 -107871237 - AluSx SINE Alu -7 305 1 253 102 20 20 chr9 34400222 34400271 -107871173 - MLT2E LTR ERVL -2 626 578 270 0 0 0 chr9 34400534 34400564 -107870880 + (TG)n Simple_repeat Simple_repeat 2 31 0 2067 116 0 0 chr9 34400566 34400843 -107870601 - AluSx SINE Alu -35 277 1 1758 181 32 83 chr9 34401566 34402058 -107869386 + MLT1C LTR MaLR 1 467 0 2444 202 34 3 chr9 34402058 34402641 -107868803 + L1MB7 LINE L1 5463 6063 -121 579 141 66 8 chr9 34403105 34403226 -107868218 - LOR1b-int LTR ERV1 -3800 4320 4193 2251 87 20 0 chr9 34403227 34403526 -107867918 - AluSx SINE Alu -7 305 1 10571 107 23 22 chr9 34403585 34405379 -107866065 - LOR1b-int LTR ERV1 -3928 4192 2397 1352 133 0 0 chr9 34405379 34405560 -107865884 + AluSx SINE Alu 1 181 -131 6173 106 71 29 chr9 34405565 34407631 -107863813 - LOR1b-int LTR ERV1 -5731 2389 201 1609 168 59 3 chr9 34407641 34407963 -107863481 - LOR1b-int LTR ERV1 -7749 371 32 2129 156 49 0 chr9 34407968 34408359 -107863085 - LOR1b LTR ERV1 0 461 52 247 294 151 84 chr9 34408408 34408779 -107862665 - L2 LINE L2 -1142 2172 1777 695 110 10 0 chr9 34409054 34409154 -107862290 - AluSg SINE Alu -13 296 196 870 105 0 0 chr9 34409155 34409269 -107862175 - AluSg SINE Alu -196 114 1 23 0 0 0 chr9 34409599 34409622 -107861822 + AT_rich Low_complexity Low_complexity 1 23 0 30402 103 13 56 chr9 34409652 34416083 -107855361 - L1PA7 LINE L1 0 6154 12 24 0 0 0 chr9 34416129 34416153 -107855291 + AT_rich Low_complexity Low_complexity 1 24 0 784 263 0 11 chr9 34416558 34416748 -107854696 + AluJo SINE Alu 118 305 -7 365 231 98 10 chr9 34417145 34417269 -107854175 + MIR SINE MIR 50 188 -63 240 111 0 0 chr9 34418124 34418169 -107853275 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 2152 107 0 4 chr9 34418169 34418450 -107852994 - AluSx SINE Alu -32 280 1 331 305 59 27 chr9 34418798 34418985 -107852459 + L1M4 LINE L1 4415 4607 -1539 33 25 0 0 chr9 34419293 34419333 -107852111 + AT_rich Low_complexity Low_complexity 1 40 0 452 102 72 6 chr9 34419333 34419499 -107851945 + (TA)n Simple_repeat Simple_repeat 1 177 0 26 0 0 0 chr9 34419505 34419531 -107851913 + AT_rich Low_complexity Low_complexity 1 26 0 390 159 80 6 chr9 34419535 34419698 -107851746 + (TA)n Simple_repeat Simple_repeat 1 175 0 818 249 10 61 chr9 34419704 34420001 -107851443 - AluSp SINE Alu -19 284 3 2880 128 2 4 chr9 34420121 34420573 -107850871 + Tigger1 DNA MER2_type 1963 2413 -5 398 206 10 41 chr9 34420578 34420675 -107850769 - MER63 DNA MER1_type -342 720 1 2137 111 4 0 chr9 34421200 34421479 -107849965 + AluSx SINE Alu 5 284 -28 2976 207 72 30 chr9 34421486 34421891 -107849553 + L1ME1 LINE L1 4323 4709 -1457 2579 93 25 0 chr9 34421891 34422246 -107849198 + THE1B LTR MaLR 1 364 0 2976 207 72 30 chr9 34422246 34423496 -107847948 + L1ME1 LINE L1 4709 6043 -123 408 222 18 78 chr9 34423467 34423551 -107847893 + L1MA10 LINE L1 6175 6246 -88 * 2121 129 10 0 chr9 34423551 34423845 -107847599 - AluSx SINE Alu -15 297 1 408 222 18 78 chr9 34423845 34423927 -107847517 + L1MA10 LINE L1 6246 6331 -3 15041 57 8 7 chr9 34424031 34425999 -107845445 + HERVL-A1 LTR ERVL 3684 5654 0 2566 102 34 8 chr9 34425999 34426403 -107845041 + MLT2A1 LTR ERVL 1 479 -36 272 36 121 0 chr9 34426403 34426486 -107844958 + (TA)n Simple_repeat Simple_repeat 1 93 0 2575 188 52 5 chr9 34426489 34427049 -107844395 - L1MCa LINE L1 -5817 609 24 633 240 66 0 chr9 34427082 34427278 -107844166 + LTR50 LTR ERVL 14 222 -573 301 292 146 0 chr9 34427474 34427604 -107843840 - MIR SINE MIR -12 250 102 204 277 0 0 chr9 34429162 34429209 -107842235 + MIR SINE MIR 168 214 -48 229 259 0 0 chr9 34431005 34431059 -107840385 + (TG)n Simple_repeat Simple_repeat 1 54 0 565 163 0 0 chr9 34431245 34431343 -107840101 - AluSp/q SINE Alu -10 303 206 348 243 28 28 chr9 34432515 34432622 -107838822 + MIR SINE MIR 94 200 -62 2191 98 0 14 chr9 34432699 34432994 -107838450 + AluY SINE Alu 1 291 -20 528 359 67 22 chr9 34435038 34435353 -107836091 - L2 LINE L2 -15 3257 2929 210 37 0 0 chr9 34436157 34436184 -107835260 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2050 100 0 0 chr9 34436188 34436448 -107834996 - AluSc SINE Alu -21 288 29 315 228 109 20 chr9 34436660 34436761 -107834683 - L2 LINE L2 -1 3271 3162 227 31 31 0 chr9 34436779 34436811 -107834633 + (TGG)n Simple_repeat Simple_repeat 1 33 0 246 156 47 0 chr9 34437447 34437511 -107833933 + (TA)n Simple_repeat Simple_repeat 2 68 0 258 286 61 0 chr9 34438778 34438876 -107832568 - MLT1G1 LTR MaLR 0 595 492 1644 197 56 0 chr9 34438912 34439287 -107832157 - L1ME2 LINE L1 -200 5964 5569 1310 196 25 0 chr9 34439295 34439580 -107831864 - L1ME1 LINE L1 -223 6441 6150 1115 151 120 224 chr9 34439698 34440306 -107831138 - MLT2B3 LTR ERVL -7 547 3 386 164 19 39 chr9 34440346 34440450 -107830994 - L1ME1 LINE L1 -1155 5489 5388 2973 209 50 71 chr9 34440460 34441023 -107830421 - L1ME1 LINE L1 -5601 941 405 6021 121 16 0 chr9 34441023 34442034 -107829410 - L1PA14 LINE L1 -1 6160 5144 2973 209 50 71 chr9 34442034 34442415 -107829029 - L1ME1 LINE L1 -6137 405 17 187 341 59 0 chr9 34443178 34443263 -107828181 + L3 LINE CR1 1308 1397 -180 186 294 0 0 chr9 34443271 34443322 -107828122 + L2 LINE L2 3017 3067 -205 1005 209 19 0 chr9 34443413 34443623 -107827821 + MER20 DNA MER1_type 2 215 -4 346 239 147 112 chr9 34444545 34444742 -107826702 - MIR SINE MIR -13 249 46 625 310 78 0 chr9 34446464 34446706 -107824738 + MIR SINE MIR 2 262 0 239 136 0 61 chr9 34447043 34447109 -107824335 - L1MC4 LINE L1 -1345 6697 6636 393 264 21 7 chr9 34447157 34447297 -107824147 + (TA)n Simple_repeat Simple_repeat 1 142 0 264 111 0 0 chr9 34447300 34447345 -107824099 + (TG)n Simple_repeat Simple_repeat 1 45 0 274 240 112 56 chr9 34447967 34448146 -107823298 - LTR67 LTR ERVL -9 548 360 250 273 0 0 chr9 34448208 34448263 -107823181 - MER63 DNA MER1_type 0 1061 1007 24 0 0 0 chr9 34448270 34448294 -107823150 + AT_rich Low_complexity Low_complexity 1 24 0 5410 159 16 7 chr9 34448302 34450279 -107821165 - L1MA4 LINE L1 -7 6475 4484 3394 183 16 5 chr9 34450275 34450916 -107820528 - L1MA4 LINE L1 -4676 652 5 * 13573 134 58 6 chr9 34450988 34453279 -107818165 + Tigger1 DNA MER2_type 2 2413 -5 398 206 10 41 chr9 34453284 34453381 -107818063 - MER63 DNA MER1_type -342 720 1 2254 93 4 0 chr9 34453906 34454224 -107817220 + AluSp SINE Alu 5 323 0 343 201 280 37 chr9 34454816 34455084 -107816360 - L1ME4a LINE L1 -7 6114 5782 413 63 38 13 chr9 34455099 34455178 -107816266 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 382 277 107 0 chr9 34455202 34455314 -107816130 + FLAM_A SINE Alu 2 125 -8 236 222 0 69 chr9 34455325 34455397 -107816047 - L1ME4a LINE L1 -433 5688 5622 536 314 90 22 chr9 34455464 34455687 -107815757 + MIR SINE MIR 3 240 -22 234 283 132 0 chr9 34456022 34456128 -107815316 + LTR16A1 LTR ERVL 338 457 0 867 196 27 38 chr9 34456979 34457163 -107814281 + MER5A DNA MER1_type 7 188 -1 248 291 81 108 chr9 34457193 34457416 -107814028 + L2 LINE L2 2956 3172 -100 2791 93 17 14 chr9 34457664 34458085 -107813359 - L1MA3 LINE L1 0 6305 5884 187 333 0 0 chr9 34458704 34458764 -107812680 + L2 LINE L2 3244 3303 -10 21 0 0 0 chr9 34461776 34461797 -107809647 + AT_rich Low_complexity Low_complexity 1 21 0 1908 226 75 33 chr9 34462141 34462447 -107808997 + MER90 LTR ERV1 1 341 -234 2209 136 42 20 chr9 34462447 34462801 -107808643 + THE1B LTR MaLR 1 362 -2 1908 226 75 33 chr9 34462801 34463037 -107808407 + MER90 LTR ERV1 341 566 -9 225 314 14 0 chr9 34463562 34463632 -107807812 + CT-rich Low_complexity Low_complexity 2 72 0 7641 133 14 13 chr9 34463699 34463851 -107807593 - L1MA2 LINE L1 -6 7717 7567 2086 4 0 0 chr9 34463851 34464076 -107807368 - AluYa5 SINE Alu -2 309 85 7641 133 14 13 chr9 34464076 34466285 -107805159 - L1MA2 LINE L1 -156 7567 5350 2236 107 7 0 chr9 34466285 34466584 -107804860 - AluY SINE Alu -10 301 1 7641 133 14 13 chr9 34466584 34466706 -107804738 - L1MA2 LINE L1 -2373 5350 5230 483 117 0 0 chr9 34466709 34466786 -107804658 - Alu SINE Alu 0 311 235 10945 119 56 3 chr9 34466786 34468558 -107802886 - L1MA2 LINE L1 -4594 2971 1105 314 205 116 27 chr9 34468554 34468666 -107802778 - L1MA2 LINE L1 -7430 135 14 * 37 52 0 0 chr9 34468809 34468867 -107802577 + AT_rich Low_complexity Low_complexity 1 58 0 1136 133 7 5 chr9 34468985 34469206 -107802238 - L1ME LINE L1 -653 5509 5290 22 0 0 0 chr9 34469261 34469283 -107802161 + AT_rich Low_complexity Low_complexity 1 22 0 1424 123 33 12 chr9 34469402 34469646 -107801798 - L1PB2 LINE L1 -8 6143 5895 225 245 128 11 chr9 34469774 34469868 -107801576 - MIR SINE MIR -67 195 91 3277 178 19 32 chr9 34469980 34470373 -107801071 + L1 LINE L1 3995 4374 -1772 225 0 0 0 chr9 34470373 34470398 -107801046 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3277 178 19 32 chr9 34470398 34470796 -107800648 + L1 LINE L1 4374 4776 -1370 * 5205 38 81 0 chr9 34470791 34471480 -107799964 - L1P LINE L1 -1942 4204 3460 3542 132 28 46 chr9 34471584 34471848 -107799596 - LTR26 LTR ERV1 -2 601 334 2261 64 58 3 chr9 34471848 34472143 -107799301 + AluY SINE Alu 1 311 0 3542 132 28 46 chr9 34472143 34472490 -107798954 - LTR26 LTR ERV1 -269 334 1 415 193 57 0 chr9 34473771 34473859 -107797585 - LTR40b LTR ERVL 0 462 370 38 39 0 0 chr9 34473909 34473961 -107797483 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr9 34474064 34474095 -107797349 + AT_rich Low_complexity Low_complexity 1 31 0 1350 203 4 4 chr9 34474305 34474541 -107796903 + MER8 DNA MER2_type 1 236 -3 255 378 86 0 chr9 34474546 34474697 -107796747 - L2 LINE L2 -1 3271 3108 603 240 114 94 chr9 34474715 34475124 -107796320 - L1ME4a LINE L1 -63 6452 6018 1009 165 21 5 chr9 34475124 34475318 -107796126 - L1PA16 LINE L1 -7 6159 5963 603 240 114 94 chr9 34475318 34475688 -107795756 - L1ME4a LINE L1 -497 6018 5657 223 321 42 103 chr9 34475779 34475944 -107795500 - MIR SINE MIR -93 169 15 1277 223 68 5 chr9 34476248 34476647 -107794797 - L1ME4a LINE L1 -3440 3100 2677 1024 208 35 76 chr9 34476806 34477147 -107794297 - MLT1A1 LTR MaLR -38 327 1 776 197 96 20 chr9 34477148 34478599 -107792845 - L1ME4a LINE L1 -3917 2623 995 586 288 44 24 chr9 34478608 34478813 -107792631 + L1MDa LINE L1 252 460 -6080 1532 256 116 13 chr9 34478829 34479851 -107791593 - L1MCc LINE L1 -3363 3578 2471 23 33 0 0 chr9 34479851 34479881 -107791563 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr9 34479922 34479954 -107791490 + AT_rich Low_complexity Low_complexity 1 32 0 3368 182 3 5 chr9 34480039 34480676 -107790768 - L1MA7 LINE L1 0 6291 5656 291 146 0 0 chr9 34480692 34480740 -107790704 - L1MA7 LINE L1 -739 5573 5526 1228 222 112 16 chr9 34480745 34481493 -107789951 - L1MCc LINE L1 -4601 2340 1410 369 0 0 0 chr9 34482029 34482070 -107789374 + (CA)n Simple_repeat Simple_repeat 2 42 0 197 118 29 0 chr9 34482236 34482270 -107789174 - L2 LINE L2 0 3272 3238 215 292 131 31 chr9 34484091 34484221 -107787223 - MIR SINE MIR -71 191 49 6763 118 58 81 chr9 34484502 34485832 -107785612 - HSMAR2 DNA Mariner -2 1300 2 381 22 0 0 chr9 34485832 34485878 -107785566 + (TG)n Simple_repeat Simple_repeat 2 47 0 580 264 61 7 chr9 34486797 34487060 -107784384 + L1ME4a LINE L1 5478 5757 -364 13876 195 21 9 chr9 34487161 34493300 -107778144 + L1PB1 LINE L1 6 6516 -351 1032 149 0 0 chr9 34493300 34493518 -107777926 + (TA)n Simple_repeat Simple_repeat 1 218 0 13876 195 21 9 chr9 34493518 34493867 -107777577 + L1PB1 LINE L1 6516 6859 -8 269 226 64 59 chr9 34493875 34494079 -107777365 + L1ME4a LINE L1 5909 6113 -8 21 0 0 0 chr9 34494118 34494139 -107777305 + AT_rich Low_complexity Low_complexity 1 21 0 274 282 70 0 chr9 34494567 34494638 -107776806 - MER91C DNA MER1_type -64 76 1 497 243 37 0 chr9 34494948 34495055 -107776389 - MIR SINE MIR -104 158 48 22 56 0 0 chr9 34497399 34497435 -107774009 + AT_rich Low_complexity Low_complexity 1 36 0 396 359 164 16 chr9 34497489 34497873 -107773571 + L2 LINE L2 2832 3272 0 4854 104 16 30 chr9 34498063 34498883 -107772561 + L1PA16 LINE L1 5356 6163 -3 581 283 30 63 chr9 34498938 34499175 -107772269 - MIR SINE MIR -20 242 14 386 233 61 104 chr9 34500089 34500252 -107771192 + MIR3 SINE MIR 45 200 -8 426 20 0 0 chr9 34501027 34501078 -107770366 + (GA)n Simple_repeat Simple_repeat 1 51 0 1578 219 107 15 chr9 34501324 34501762 -107769682 + MLT2B1 LTR ERVL 1 488 -32 317 82 20 0 chr9 34501762 34501811 -107769633 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1578 219 107 15 chr9 34501811 34501848 -107769596 + MLT2B1 LTR ERVL 488 520 0 623 183 0 0 chr9 34501848 34501963 -107769481 + MLT1A2-int LTR MaLR 1 115 -1256 * 2034 194 52 9 chr9 34501954 34502418 -107769026 + MLT1A2-int LTR MaLR 260 743 -628 234 275 0 0 chr9 34502533 34502602 -107768842 + MLT1A2-int LTR MaLR 679 747 -988 38 22 0 0 chr9 34502660 34502705 -107768739 + AT_rich Low_complexity Low_complexity 1 45 0 1620 163 23 20 chr9 34502731 34503032 -107768412 + MLT1A2-int LTR MaLR 1353 1654 -81 1052 246 69 17 chr9 34503032 34503320 -107768124 + MLT1A2 LTR MaLR 68 370 -4 254 226 156 54 chr9 34503885 34504018 -107767426 + MIR3 SINE MIR 10 153 -66 214 359 72 24 chr9 34504295 34504462 -107766982 + L2 LINE L2 2916 3090 -182 322 261 189 9 chr9 34504611 34504722 -107766722 + MER5A DNA MER1_type 59 189 0 365 345 122 0 chr9 34504971 34505119 -107766325 - MER91B DNA MER1_type -11 179 14 460 290 79 47 chr9 34505412 34505704 -107765740 - MLT1H1 LTR MaLR -188 367 100 225 365 56 24 chr9 34506042 34506168 -107765276 + MIR3 SINE MIR 2 131 -77 2431 35 0 3 chr9 34506522 34506824 -107764620 - AluY SINE Alu 0 301 1 25 0 0 0 chr9 34507293 34507318 -107764126 + AT_rich Low_complexity Low_complexity 1 25 0 1700 201 112 57 chr9 34507431 34507923 -107763521 + MLT2B1 LTR ERVL 1 519 -1 262 191 221 0 chr9 34508912 34508980 -107762464 + MIR SINE MIR 180 262 0 3450 114 88 25 chr9 34509057 34509524 -107761920 - Tigger3b DNA MER2_type -1797 1231 708 2362 62 27 0 chr9 34509524 34509816 -107761628 - AluSc SINE Alu -9 300 1 3450 114 88 25 chr9 34509816 34510022 -107761422 - Tigger3b DNA MER2_type -2320 708 516 2653 145 15 13 chr9 34510228 34510689 -107760755 - Tigger3b DNA MER2_type -768 463 2 27 0 0 0 chr9 34511632 34511659 -107759785 + AT_rich Low_complexity Low_complexity 1 27 0 265 378 111 0 chr9 34511843 34511978 -107759466 + MLT1K LTR MaLR 2 151 -437 1275 86 19 0 chr9 34511980 34512142 -107759302 - AluSx SINE Alu -147 165 1 473 293 68 15 chr9 34512214 34512419 -107759025 + MLT1K LTR MaLR 369 584 -4 276 274 217 9 chr9 34512699 34512805 -107758639 - MER5A DNA MER1_type -1 188 61 1815 124 0 12 chr9 34512831 34513089 -107758355 - AluSg SINE Alu -55 255 1 320 242 0 0 chr9 34513091 34513157 -107758287 - MER5A DNA MER1_type -115 74 9 2048 171 63 145 chr9 34514042 34514834 -107756610 + LTR8A LTR ERV1 1 727 0 400 310 16 8 chr9 34516059 34516188 -107755256 + MER5A DNA MER1_type 38 167 -22 25 0 0 0 chr9 34516238 34516263 -107755181 + AT_rich Low_complexity Low_complexity 1 25 0 489 254 132 52 chr9 34516573 34516931 -107754513 - MLT1F1 LTR MaLR 0 593 179 396 138 0 0 chr9 34516931 34516996 -107754448 + (GA)n Simple_repeat Simple_repeat 1 65 0 739 204 47 43 chr9 34516996 34517207 -107754237 - MLT1F1 LTR MaLR -355 212 1 223 235 0 0 chr9 34517222 34517273 -107754171 - MER91B DNA MER1_type -136 54 4 674 333 120 28 chr9 34517471 34518238 -107753206 + L2 LINE L2 2482 3313 0 926 206 131 14 chr9 34518331 34518545 -107752899 - MER8 DNA MER2_type 0 239 1 211 288 55 27 chr9 34519140 34519213 -107752231 + L2 LINE L2 3198 3272 0 194 350 80 10 chr9 34520053 34520153 -107751291 - L2 LINE L2 -43 3229 3123 1520 258 60 35 chr9 34520272 34520818 -107750626 - MLT1E LTR MaLR -2 591 32 193 339 50 50 chr9 34521034 34521067 -107750377 - L2 LINE L2 -464 2850 2818 1539 115 23 109 chr9 34521067 34521415 -107750029 + L1MA10 LINE L1 6015 6332 -2 193 339 50 50 chr9 34521415 34521561 -107749883 - L2 LINE L2 -495 2819 2671 239 212 12 82 chr9 34522003 34522088 -107749356 + MIR3 SINE MIR 118 196 -12 2531 74 0 0 chr9 34522124 34522433 -107749011 + AluY SINE Alu 1 309 -2 31 0 0 0 chr9 34523194 34523225 -107748219 + AT_rich Low_complexity Low_complexity 1 31 0 3207 222 22 53 chr9 34523313 34523803 -107747641 - L1ME1 LINE L1 -9 6157 5653 234 0 0 0 chr9 34523803 34523829 -107747615 + (TG)n Simple_repeat Simple_repeat 1 26 0 3207 222 22 53 chr9 34523829 34524503 -107746941 - L1ME1 LINE L1 -513 5653 4999 249 135 0 0 chr9 34524503 34524540 -107746904 + U2 snRNA snRNA 1 37 -151 3207 222 22 53 chr9 34524540 34524650 -107746794 - L1ME1 LINE L1 -1167 4999 4887 432 236 55 6 chr9 34524641 34524806 -107746638 - L1M4 LINE L1 -893 5253 5081 * 198 367 114 30 chr9 34525614 34525807 -107745637 + L2 LINE L2 1613 1788 -1526 2479 56 0 10 chr9 34525807 34526112 -107745332 - AluY SINE Alu -9 302 1 198 367 114 30 chr9 34526112 34526349 -107745095 + L2 LINE L2 1788 2079 -1235 2458 43 3 55 chr9 34528340 34528666 -107742778 + AluY SINE Alu 1 309 -2 217 337 43 11 chr9 34528666 34528758 -107742686 - MIR SINE MIR -69 139 45 319 323 42 48 chr9 34528956 34529287 -107742157 - L1M4 LINE L1 -802 5344 5016 620 176 0 0 chr9 34529332 34529434 -107742010 + AluJ/FLAM SINE Alu 1 102 -210 279 0 0 0 chr9 34530657 34530688 -107740756 + (CA)n Simple_repeat Simple_repeat 1 31 0 445 272 64 35 chr9 34531386 34531559 -107739885 - MIR3 SINE MIR -7 201 24 21 0 0 0 chr9 34532035 34532056 -107739388 + AT_rich Low_complexity Low_complexity 1 21 0 409 342 56 60 chr9 34532564 34532830 -107738614 - L2 LINE L2 -58 3214 2950 38 39 0 0 chr9 34533044 34533096 -107738348 + AT_rich Low_complexity Low_complexity 1 52 0 415 332 97 8 chr9 34535179 34535426 -107736018 + L2 LINE L2 3006 3274 -39 3203 174 49 22 chr9 34535824 34536094 -107735350 - L1MD2 LINE L1 0 6359 6098 2180 103 143 11 chr9 34536094 34536472 -107734972 + MSTA LTR MaLR 1 428 0 3203 174 49 22 chr9 34536472 34536889 -107734555 - L1MD2 LINE L1 -261 6098 5653 2373 129 86 14 chr9 34537054 34537473 -107733971 - L1PA16 LINE L1 0 6166 5718 1654 201 39 0 chr9 34537473 34537857 -107733587 - L1M4 LINE L1 -1384 4762 4364 1901 203 101 53 chr9 34537870 34538248 -107733196 + L1MC4 LINE L1 7407 7826 -216 1608 184 10 19 chr9 34538248 34538558 -107732886 - AluJo SINE Alu -3 309 3 1901 203 101 53 chr9 34538558 34538785 -107732659 + L1MC4 LINE L1 7826 8041 -1 231 151 38 38 chr9 34538804 34538857 -107732587 + L2 LINE L2 3245 3297 -16 654 322 59 22 chr9 34539301 34539745 -107731699 - L1ME4a LINE L1 -193 5928 5469 303 315 22 11 chr9 34539803 34539892 -107731552 + MER5B DNA MER1_type 1 90 -88 1504 143 147 16 chr9 34540264 34540578 -107730866 + L1PA15 LINE L1 5811 6165 0 3438 160 42 30 chr9 34540688 34541400 -107730044 - L1MD1 LINE L1 -6 6630 5910 1402 111 0 5 chr9 34541400 34541589 -107729855 + THE1B LTR MaLR 2 189 -175 428 151 0 14 chr9 34541594 34541667 -107729777 + THE1B LTR MaLR 304 375 0 4822 226 85 71 chr9 34541667 34543175 -107728269 - L1MD1 LINE L1 -743 5797 4312 2053 123 17 0 chr9 34543175 34543468 -107727976 - AluSx SINE Alu -12 300 3 4822 226 85 71 chr9 34543468 34543708 -107727736 - L1MD1 LINE L1 -2228 4312 4077 644 227 0 16 chr9 34543708 34543836 -107727608 + FLAM_A SINE Alu 1 126 -7 4822 226 85 71 chr9 34543836 34544204 -107727240 - L1MD1 LINE L1 -2463 4077 3786 2860 127 47 2 chr9 34544204 34544668 -107726776 - MER31A LTR ERV1 0 485 1 4822 226 85 71 chr9 34544668 34544978 -107726466 - L1MD1 LINE L1 -2754 3786 3482 1721 257 32 28 chr9 34544971 34545441 -107726003 - L1MD1 LINE L1 -5904 636 165 * 5688 177 13 21 chr9 34545420 34545984 -107725460 - L1MA4A LINE L1 -301 6396 5829 1555 158 75 7 chr9 34545984 34546263 -107725181 - AluJb SINE Alu -14 298 1 5688 177 13 21 chr9 34546263 34547578 -107723866 - L1MA4A LINE L1 -868 5829 4529 42222 38 24 1 chr9 34548178 34554190 -107717254 + L1PA3 LINE L1 2 6151 -4 3159 23 0 18 chr9 34554200 34554586 -107716858 + L1PA4 LINE L1 5770 6148 -7 2149 109 3 10 chr9 34554922 34555234 -107716210 + AluSq SINE Alu 1 310 -3 1212 174 81 4 chr9 34555491 34555738 -107715706 - ORSL DNA AcHobo -9 266 1 336 293 41 24 chr9 34555745 34555868 -107715576 + L2 LINE L2 3188 3312 -1 751 261 28 51 chr9 34556257 34556510 -107714934 - MIR SINE MIR -13 249 3 1933 159 0 14 chr9 34556734 34557029 -107714415 + AluSx SINE Alu 1 291 -21 3138 84 18 14 chr9 34557519 34557961 -107713483 + MLT2A1 LTR ERVL 1 444 0 213 154 0 0 chr9 34558031 34558070 -107713374 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 3542 166 6 3 chr9 34558138 34558771 -107712673 - L1PA16 LINE L1 0 6166 5532 253 252 9 139 chr9 34560858 34560973 -107710471 - MIR3 SINE MIR -13 195 96 761 307 29 0 chr9 34560980 34561221 -107710223 - MER90 LTR ERV1 -4 610 363 43093 47 1 1 chr9 34561258 34567409 -107704035 + L1PA4 LINE L1 1 6155 0 1369 211 29 0 chr9 34567615 34567966 -107703478 - L1MA4 LINE L1 -5 6295 5935 732 145 109 7 chr9 34568147 34568285 -107703159 - Tigger1 DNA MER2_type -1464 954 803 857 285 136 35 chr9 34568442 34569280 -107702164 + HAL1 LINE L1 1585 2507 0 274 250 22 43 chr9 34569372 34569464 -107701980 + L1MDa LINE L1 3 92 -6448 280 192 53 0 chr9 34569575 34569692 -107701752 + L1M4 LINE L1 5188 5311 -848 2081 103 164 14 chr9 34569692 34570052 -107701392 - MSTA LTR MaLR 0 428 15 314 141 104 178 chr9 34570102 34570265 -107701179 + L1MD3 LINE L1 7832 7982 -13 259 367 69 11 chr9 34570341 34570529 -107700915 + MIR SINE MIR 57 255 -7 1762 136 63 41 chr9 34571368 34571735 -107699709 - THE1C LTR MaLR 0 375 1 237 228 88 44 chr9 34571852 34571966 -107699478 + L1MDa LINE L1 478 596 -5934 391 322 26 41 chr9 34572039 34572306 -107699138 + L1MDa LINE L1 1059 1321 -5209 2021 126 4 0 chr9 34572306 34572605 -107698839 + AluSg SINE Alu 1 300 0 295 279 105 12 chr9 34572841 34573013 -107698431 + L1ME1 LINE L1 5774 5961 -205 23 0 0 0 chr9 34573162 34573185 -107698259 + AT_rich Low_complexity Low_complexity 1 23 0 483 220 193 7 chr9 34576550 34576700 -107694744 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr9 34577441 34577463 -107693981 + AT_rich Low_complexity Low_complexity 1 22 0 1967 139 3 0 chr9 34577463 34577751 -107693693 - AluSx SINE Alu -23 289 1 200 277 48 48 chr9 34579746 34579829 -107691615 + MIR SINE MIR 158 240 -22 12558 193 29 14 chr9 34579879 34580539 -107690905 + L1MA4A LINE L1 2489 3137 -3166 2227 86 3 26 chr9 34580539 34580841 -107690603 + AluSc SINE Alu 1 295 -14 12558 193 29 14 chr9 34580841 34583854 -107687590 + L1MA4A LINE L1 3137 6280 -23 1821 236 42 11 chr9 34583870 34584341 -107687103 - Charlie1a DNA MER1_type -968 487 2 467 165 46 9 chr9 34584572 34584681 -107686763 + LTR50 LTR ERVL 556 668 -127 1739 202 19 11 chr9 34584683 34585045 -107686399 - MER89 LTR ERV1 0 559 195 412 135 54 0 chr9 34585027 34585101 -107686343 - MER89 LTR ERV1 -481 78 1 * 355 176 40 0 chr9 34585104 34585178 -107686266 + LTR50 LTR ERVL 711 787 -8 326 278 56 0 chr9 34585350 34585458 -107685986 + MER81 DNA DNA 1 114 0 1220 200 54 70 chr9 34586943 34587479 -107683965 - MER67C LTR ERV1 0 514 2 841 229 64 24 chr9 34587562 34587811 -107683633 - MER67C-int LTR ERV1 -100 4836 4578 333 241 0 35 chr9 34587946 34588033 -107683411 - MER67C-int LTR ERV1 -371 4565 4482 260 191 48 0 chr9 34588154 34588217 -107683227 - MER67C-int LTR ERV1 -735 4201 4136 19222 38 2 2 chr9 34588226 34591367 -107680077 - L1PA5 LINE L1 -4 6150 3006 512 215 9 0 chr9 34591371 34591478 -107679966 + MER31-int LTR ERV1 4006 4113 -823 2002 148 10 3 chr9 34591690 34591993 -107679451 - AluSx SINE Alu -7 305 1 2675 193 72 32 chr9 34592002 34592224 -107679220 - MER63C DNA MER1_type -312 748 536 1689 194 0 0 chr9 34592224 34592508 -107678936 - AluJb SINE Alu -28 284 1 2675 193 72 32 chr9 34592508 34593004 -107678440 - MER63C DNA MER1_type -524 536 1 2169 135 0 0 chr9 34593203 34593500 -107677944 + AluSx SINE Alu 1 297 -15 2291 117 3 0 chr9 34595457 34595764 -107675680 - AluSx SINE Alu -4 308 1 303 49 0 0 chr9 34596055 34596096 -107675348 + (TG)n Simple_repeat Simple_repeat 2 42 0 576 238 100 57 chr9 34596103 34596323 -107675121 - MIR SINE MIR -14 248 19 2228 93 14 0 chr9 34596458 34596747 -107674697 + AluSc SINE Alu 1 293 -16 438 328 111 15 chr9 34597381 34597770 -107673674 + L2 LINE L2 2549 2979 -293 265 318 24 0 chr9 34597821 34597906 -107673538 + L2 LINE L2 3147 3233 -39 2401 97 0 0 chr9 34599408 34599718 -107671726 - AluSg SINE Alu 0 310 1 2249 114 0 7 chr9 34599953 34600260 -107671184 + AluSx SINE Alu 1 305 -7 213 269 19 0 chr9 34601530 34601582 -107669862 + L2 LINE L2 3261 3313 0 262 173 0 93 chr9 34602101 34602176 -107669268 + MIR SINE MIR 195 262 0 283 265 82 41 chr9 34603766 34603864 -107667580 - MIR3 SINE MIR -23 185 84 1794 131 32 18 chr9 34603878 34604183 -107667261 + AluSx SINE Alu 1 309 0 730 246 66 6 chr9 34604518 34604701 -107666743 - MER91A DNA MER1_type 0 196 3 221 241 0 17 chr9 34604854 34604912 -107666532 + GA-rich Low_complexity Low_complexity 3 59 0 799 267 36 24 chr9 34606503 34606750 -107664694 - MIR SINE MIR -1 261 12 2402 76 3 0 chr9 34606905 34607196 -107664248 + AluSg SINE Alu 1 292 -18 4208 174 43 13 chr9 34608084 34608752 -107662692 - L1MB2 LINE L1 -1 6170 5524 2348 100 0 3 chr9 34608752 34609062 -107662382 - AluSg SINE Alu -1 309 1 4208 174 43 13 chr9 34609062 34609221 -107662223 - L1MB2 LINE L1 -647 5524 5371 2120 92 11 0 chr9 34609221 34609494 -107661950 - AluSx SINE Alu -12 300 25 4208 174 43 13 chr9 34609494 34609831 -107661613 - L1MB2 LINE L1 -800 5371 4970 1841 146 45 0 chr9 34609831 34610215 -107661229 + MLT2B2 LTR ERVL 1 448 -67 256 71 95 0 chr9 34610278 34610320 -107661124 + MLT2B2 LTR ERVL 475 520 0 3006 201 67 17 chr9 34610324 34611027 -107660417 - L1MB2 LINE L1 -1181 4965 4214 2388 52 0 14 chr9 34611027 34611349 -107660095 + AluY SINE Alu 1 318 0 3006 201 67 17 chr9 34611349 34611452 -107659992 - L1MB2 LINE L1 -1932 4214 4118 702 122 20 41 chr9 34611584 34611731 -107659713 + MER72 LTR ERV1 181 324 -398 261 0 0 0 chr9 34612780 34612809 -107658635 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2621 32 7 3 chr9 34613304 34613613 -107657831 + AluY SINE Alu 1 310 -1 6467 123 36 6 chr9 34613697 34615748 -107655696 + L1MA2 LINE L1 4188 6304 0 21 0 0 0 chr9 34615748 34615769 -107655675 + AT_rich Low_complexity Low_complexity 1 21 0 360 325 29 48 chr9 34616016 34616225 -107655219 + MIR SINE MIR 2 206 -56 * 409 362 29 14 chr9 34616196 34616403 -107655041 - L2 LINE L2 -975 2339 2130 252 309 94 40 chr9 34617701 34617850 -107653594 - MIR SINE MIR -101 161 5 230 290 30 20 chr9 34618023 34618123 -107653321 - MIR SINE MIR -13 249 149 298 0 0 0 chr9 34619036 34619072 -107652372 + L1MA5A LINE L1 6041 6076 -221 2459 46 10 3 chr9 34619226 34619533 -107651911 + AluY SINE Alu 1 309 -2 439 317 131 6 chr9 34620387 34620570 -107650874 + MIR SINE MIR 2 207 -55 2005 112 6 3 chr9 34620696 34621009 -107650435 - L1MA5A LINE L1 -6 6291 5978 332 394 80 0 chr9 34621107 34621244 -107650200 - MIR3 SINE MIR -57 151 4 547 230 79 43 chr9 34621334 34621372 -107650072 - MLT1J LTR MaLR -19 492 457 1498 134 124 18 chr9 34621372 34621647 -107649797 + AluSg1 SINE Alu 1 304 -5 547 230 79 43 chr9 34621647 34621957 -107649487 - MLT1J LTR MaLR -54 457 108 2475 207 28 32 chr9 34622251 34622902 -107648542 + L1MB7 LINE L1 5476 6123 -61 806 173 0 0 chr9 34622902 34623029 -107648415 - FLAM_C SINE Alu -6 127 1 4147 76 2 13 chr9 34623828 34624382 -107647062 - L1PA8A LINE L1 -2 6129 5582 21 0 0 0 chr9 34624387 34624408 -107647036 + AT_rich Low_complexity Low_complexity 1 21 0 358 283 62 68 chr9 34624580 34624678 -107646766 + L1M4 LINE L1 3651 3749 -2397 1599 185 15 52 chr9 34624678 34625002 -107646442 + AluJo SINE Alu 1 312 0 358 283 62 68 chr9 34625002 34625080 -107646364 + L1M4 LINE L1 3749 3826 -2320 198 0 0 0 chr9 34625080 34625102 -107646342 + (T)n Simple_repeat Simple_repeat 1 22 0 2188 124 0 10 chr9 34625121 34625435 -107646009 + AluSq SINE Alu 1 311 -2 2073 117 3 0 chr9 34625486 34625820 -107645624 + AluSx SINE Alu 1 335 0 545 147 46 18 chr9 34625828 34625937 -107645507 + MLT1H1 LTR MaLR 23 134 -421 629 193 9 0 chr9 34625963 34626077 -107645367 + FLAM_C SINE Alu 1 115 -28 333 68 0 0 chr9 34626084 34626128 -107645316 + (TC)n Simple_repeat Simple_repeat 1 44 0 357 24 0 0 chr9 34626128 34626170 -107645274 + (CA)n Simple_repeat Simple_repeat 1 42 0 915 183 170 54 chr9 34626259 34626576 -107644868 + MLT1H1 LTR MaLR 202 555 0 312 229 42 17 chr9 34626729 34626847 -107644597 + L1ME LINE L1 5617 5737 -384 2006 147 13 0 chr9 34627294 34627600 -107643844 - AluJo SINE Alu -2 310 1 268 238 50 0 chr9 34628551 34628631 -107642813 - MLT1J LTR MaLR 0 511 428 453 280 29 11 chr9 34628729 34628904 -107642540 - MLT1J LTR MaLR -331 180 3 280 272 0 11 chr9 34628965 34629057 -107642387 - L1ME LINE L1 -342 5822 5732 265 243 45 73 chr9 34629335 34629536 -107641908 + L1ME LINE L1 5628 5818 -303 204 67 0 0 chr9 34630102 34630132 -107641312 + (CCA)n Simple_repeat Simple_repeat 3 32 0 1416 186 10 71 chr9 34630497 34630808 -107640636 - AluJo SINE Alu -20 292 1 214 195 0 0 chr9 34631573 34631614 -107639830 + (TA)n Simple_repeat Simple_repeat 1 41 0 1395 139 171 4 chr9 34632394 34632639 -107638805 - AluSc SINE Alu -13 286 1 2212 120 7 0 chr9 34632760 34633068 -107638376 + AluSx SINE Alu 1 310 -2 289 274 140 13 chr9 34633856 34634013 -107637431 - L2 LINE L2 -214 3058 2882 1333 199 95 43 chr9 34634480 34634726 -107636718 + MER20B DNA MER1_type 1 233 -550 216 0 0 0 chr9 34634726 34634750 -107636694 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1333 199 95 43 chr9 34634750 34634774 -107636670 + MER20B DNA MER1_type 233 254 -529 213 39 0 0 chr9 34634774 34634800 -107636644 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1333 199 95 43 chr9 34634800 34634919 -107636525 + MER20B DNA MER1_type 254 411 -372 3357 136 34 8 chr9 34635071 34635599 -107635845 - MER72 LTR ERV1 0 722 181 4943 199 64 18 chr9 34635732 34635835 -107635609 + L1M3 LINE L1 4118 4215 -1956 2410 52 0 14 chr9 34635835 34636157 -107635287 - AluY SINE Alu 0 318 1 4943 199 64 18 chr9 34636157 34636863 -107634581 + L1M3 LINE L1 4215 4887 -1284 2347 127 139 86 chr9 34636863 34637352 -107634092 - MLT2B2 LTR ERVL 0 515 1 4943 199 64 18 chr9 34637352 34637691 -107633753 + L1M3 LINE L1 4887 5341 -830 2111 92 11 0 chr9 34637691 34637962 -107633482 + AluSx SINE Alu 27 300 -12 4943 199 64 18 chr9 34637962 34638118 -107633326 + L1M3 LINE L1 5341 5488 -683 2177 131 0 3 chr9 34638121 34638426 -107633018 + AluSg SINE Alu 1 304 -6 392 280 52 16 chr9 34638438 34638763 -107632681 - L1ME LINE L1 -658 5508 5176 252 0 0 0 chr9 34638862 34638890 -107632554 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2129 113 7 0 chr9 34638892 34639176 -107632268 - AluSq SINE Alu -27 286 1 1008 145 0 6 chr9 34639181 34639340 -107632104 - FRAM SINE Alu -19 157 1 1466 294 34 25 chr9 34639449 34640099 -107631345 - L1ME LINE L1 -1299 4847 4192 453 154 0 0 chr9 34640668 34640733 -107630711 - AluJ/FLAM SINE Alu -239 73 9 956 180 0 72 chr9 34640733 34640927 -107630517 + AluJo SINE Alu 107 286 -26 310 340 46 39 chr9 34641088 34641241 -107630203 + L2 LINE L2 3118 3271 -1 271 221 147 0 chr9 34641307 34641402 -107630042 - L1MB8 LINE L1 -27 6151 6043 21 0 0 0 chr9 34641582 34641603 -107629841 + AT_rich Low_complexity Low_complexity 1 21 0 4435 76 2 13 chr9 34641608 34642162 -107629282 + L1PA8A LINE L1 5582 6129 -2 858 173 0 0 chr9 34642961 34643088 -107628356 + FLAM_C SINE Alu 1 127 -6 2747 207 28 32 chr9 34643088 34643739 -107627705 - L1MB7 LINE L1 -61 6123 5476 635 227 79 43 chr9 34644033 34644343 -107627101 + MLT1J LTR MaLR 108 457 -54 1551 138 120 14 chr9 34644343 34644619 -107626825 - AluSg SINE Alu -5 305 1 635 227 79 43 chr9 34644619 34644657 -107626787 + MLT1J LTR MaLR 457 492 -19 323 394 80 0 chr9 34644747 34644884 -107626560 + MIR3 SINE MIR 4 151 -57 2176 112 6 3 chr9 34644982 34645295 -107626149 + L1MA5A LINE L1 5978 6291 -6 442 317 131 6 chr9 34645421 34645604 -107625840 - MIR SINE MIR -55 207 2 2487 46 10 3 chr9 34646458 34646765 -107624679 - AluY SINE Alu -2 309 1 319 0 0 0 chr9 34646919 34646955 -107624489 - L1MA5 LINE L1 -226 6074 6039 226 290 30 20 chr9 34647868 34647968 -107623476 + MIR SINE MIR 149 249 -13 244 309 94 40 chr9 34648141 34648290 -107623154 + MIR SINE MIR 5 161 -101 398 362 29 14 chr9 34649588 34649795 -107621649 + L2 LINE L2 2130 2339 -975 330 325 29 48 chr9 34649766 34649975 -107621469 - MIR SINE MIR -56 206 2 * 21 0 0 0 chr9 34650222 34650243 -107621201 + AT_rich Low_complexity Low_complexity 1 21 0 7101 121 36 6 chr9 34650243 34652294 -107619150 - L1MA2 LINE L1 0 6304 4188 2899 7 0 0 chr9 34652378 34652687 -107618757 - AluY SINE Alu -2 309 1 1209 297 41 18 chr9 34652891 34653383 -107618061 + L2 LINE L2 2294 2796 -518 286 337 22 0 chr9 34653424 34653513 -107617931 + L2 LINE L2 2905 2995 -277 312 302 22 95 chr9 34653713 34653935 -107617509 + LTR67 LTR ERVL 352 557 0 276 324 9 9 chr9 34653971 34654076 -107617368 + L2 LINE L2 3168 3272 0 3705 202 24 38 chr9 34654562 34654730 -107616714 - L1ME1 LINE L1 0 6166 5999 1318 258 51 92 chr9 34654730 34655206 -107616238 - L1MB1 LINE L1 -166 6002 5508 2459 90 0 0 chr9 34655206 34655516 -107615928 + AluSx SINE Alu 1 310 -2 1318 258 51 92 chr9 34655516 34655589 -107615855 - L1MB1 LINE L1 -660 5508 5434 2198 111 0 7 chr9 34655589 34655878 -107615566 + AluSx SINE Alu 1 287 -25 1318 258 51 92 chr9 34655878 34656098 -107615346 - L1MB1 LINE L1 -734 5434 5264 5316 229 56 36 chr9 34656099 34656638 -107614806 - L1MB1 LINE L1 -1530 4616 4089 724 191 0 52 chr9 34656638 34656774 -107614670 + FLAM_A SINE Alu 5 133 0 5316 229 56 36 chr9 34656774 34657863 -107613581 - L1MB1 LINE L1 -2057 4089 2955 7086 77 24 5 chr9 34657870 34658846 -107612598 - L1PA10 LINE L1 0 6168 5191 554 234 29 6 chr9 34658854 34659025 -107612419 - L1MEc LINE L1 -5413 983 809 316 284 46 0 chr9 34659011 34659120 -107612324 - L1MEc LINE L1 -5886 510 397 * 1047 255 66 7 chr9 34659154 34659440 -107612004 - L1MEc LINE L1 -6055 341 39 2260 95 16 0 chr9 34659736 34660041 -107611403 + AluSp SINE Alu 1 310 -3 869 286 143 26 chr9 34661484 34661869 -107609575 + MLT1J2 LTR MaLR 21 450 0 2034 107 11 11 chr9 34662678 34662982 -107608462 - AluSx SINE Alu 0 306 3 1972 180 12 0 chr9 34663025 34663369 -107608075 + Tigger1 DNA MER2_type 1 348 -2070 * 8581 85 6 3 chr9 34663368 34664513 -107606931 + Tigger1 DNA MER2_type 826 1973 -445 3866 122 35 61 chr9 34664957 34665528 -107605916 + L1MA7 LINE L1 5587 6138 -153 2007 155 3 3 chr9 34665528 34665838 -107605606 - AluJb SINE Alu -2 310 1 3866 122 35 61 chr9 34665838 34665971 -107605473 + L1MA7 LINE L1 6138 6273 -18 811 142 8 8 chr9 34665973 34666100 -107605344 - FLAM_C SINE Alu -16 127 1 2449 58 7 3 chr9 34667130 34667440 -107604004 - AluY SINE Alu 0 311 1 261 0 0 0 chr9 34667935 34667964 -107603480 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 882 265 89 45 chr9 34668856 34669388 -107602056 + LTR38B LTR ERV1 1 591 -11 585 190 90 0 chr9 34669632 34669732 -107601712 - FLAM_C SINE Alu -33 110 2 799 231 68 36 chr9 34669753 34670060 -107601384 - L1MC5 LINE L1 -36 7925 7609 1268 240 72 36 chr9 34670064 34670564 -107600880 - L1MC5 LINE L1 -446 7515 6998 3823 178 63 41 chr9 34670683 34670787 -107600657 - MER21B LTR ERV1 -99 764 664 4368 93 9 2 chr9 34670787 34671337 -107600107 - MER41A LTR ERV1 0 554 1 3823 178 63 41 chr9 34671337 34671980 -107599464 - MER21B LTR ERV1 -199 664 1 1136 145 10 117 chr9 34671980 34672270 -107599174 - L1MC5 LINE L1 -960 7001 6743 459 244 0 0 chr9 34672270 34672360 -107599084 + Charlie1b DNA MER1_type 1 90 -433 1392 154 112 70 chr9 34672361 34672449 -107598995 + MER2 DNA MER2_type 2 85 -260 1798 209 36 50 chr9 34672449 34672889 -107598555 - MER57B LTR ERV1 0 434 1 1392 154 112 70 chr9 34672889 34672966 -107598478 + MER2 DNA MER2_type 85 157 -188 3688 140 60 15 chr9 34672966 34673551 -107597893 + LTR36 LTR ERV1 1 611 0 1392 154 112 70 chr9 34673551 34673714 -107597730 + MER2 DNA MER2_type 157 345 0 945 174 47 6 chr9 34673743 34674057 -107597387 + Charlie1b DNA MER1_type 118 523 0 510 279 19 43 chr9 34674057 34674265 -107597179 - L1MC4a LINE L1 -1064 6744 6542 2531 57 3 0 chr9 34674420 34674718 -107596726 - AluY SINE Alu -12 299 1 1284 135 47 38 chr9 34674805 34675138 -107596306 + Tigger2a DNA MER2_type 2 437 -7 1335 199 122 53 chr9 34675265 34675642 -107595802 - MER57A LTR ERV1 0 403 1 418 275 130 44 chr9 34675642 34675980 -107595464 - L1MC4a LINE L1 -1652 6156 5790 1293 159 35 5 chr9 34675992 34676395 -107595049 + LTR54 LTR ERV1 9 509 -1 275 223 96 21 chr9 34676398 34676492 -107594952 - L1MC4a LINE L1 -2025 5783 5683 202 204 161 43 chr9 34676568 34676661 -107594783 - MIR SINE MIR -107 155 52 192 344 67 0 chr9 34676616 34676706 -107594738 + MER5B DNA MER1_type 61 156 -22 * 511 290 62 0 chr9 34678063 34678225 -107593219 - MIR SINE MIR -20 242 71 4853 112 13 148 chr9 34680180 34680392 -107591052 - Tigger1 DNA MER2_type 0 2418 2179 1512 220 7 14 chr9 34680392 34680688 -107590756 + AluJo SINE Alu 1 294 -18 2458 78 0 3 chr9 34680690 34680996 -107590448 + AluSc SINE Alu 1 305 -4 4853 112 13 148 chr9 34680996 34681159 -107590285 - Tigger1 DNA MER2_type -240 2178 1995 2367 90 0 0 chr9 34681159 34681459 -107589985 + AluSg SINE Alu 1 300 -10 4853 112 13 148 chr9 34681459 34682142 -107589302 - Tigger1 DNA MER2_type -423 1995 1499 950 122 0 0 chr9 34682142 34682273 -107589171 - AluSg/x SINE Alu -14 298 168 2157 161 10 36 chr9 34682273 34682583 -107588861 - Tigger1 DNA MER2_type -1936 482 182 1998 98 44 0 chr9 34682583 34682858 -107588586 + AluSx SINE Alu 1 287 -25 2157 161 10 36 chr9 34682858 34682937 -107588507 - Tigger1 DNA MER2_type -2236 182 103 2148 123 0 3 chr9 34684216 34684518 -107586926 - AluSq SINE Alu -12 301 1 230 200 44 89 chr9 34684864 34684896 -107586548 + L1MC/D LINE L1 5675 5707 -414 2215 116 3 0 chr9 34684896 34685197 -107586247 - AluSx SINE Alu -10 302 1 230 200 44 89 chr9 34685197 34685254 -107586190 + L1MC/D LINE L1 5707 5760 -361 345 158 66 40 chr9 34685263 34685339 -107586105 - MER116 DNA Mariner 0 80 3 577 197 8 8 chr9 34685764 34685881 -107585563 - Tigger1 DNA MER2_type -2301 117 1 3994 203 74 73 chr9 34685883 34686586 -107584858 + L1MC4 LINE L1 6473 7174 -868 1463 157 75 37 chr9 34686586 34686880 -107584564 + AluJo SINE Alu 3 307 -5 3994 203 74 73 chr9 34686880 34687608 -107583836 + L1MC4 LINE L1 7174 7905 -137 233 116 23 0 chr9 34687612 34687655 -107583789 + L1MC4a LINE L1 7763 7806 -2 227 370 49 29 chr9 34688288 34688534 -107582910 - L2 LINE L2 -647 2667 2417 2032 145 0 10 chr9 34688577 34688880 -107582564 + AluSx SINE Alu 1 300 -12 1329 245 207 27 chr9 34690272 34691179 -107580265 - L2 LINE L2 -3 3310 2233 206 244 0 0 chr9 34691317 34691362 -107580082 + T-rich Low_complexity Low_complexity 1 45 0 201 39 0 0 chr9 34691435 34691461 -107579983 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2485 65 0 0 chr9 34691794 34692087 -107579357 + AluY SINE Alu 1 293 -18 2219 101 16 0 chr9 34692428 34692734 -107578710 + AluSq SINE Alu 1 311 -2 1952 131 3 17 chr9 34692745 34693042 -107578402 + AluSx SINE Alu 10 302 -10 2242 100 10 19 chr9 34693047 34693358 -107578086 + AluSx SINE Alu 1 308 -4 317 263 0 0 chr9 34693688 34693764 -107577680 - MLT1J2 LTR MaLR -28 422 347 360 224 0 13 chr9 34693850 34693926 -107577518 - MLT1J1 LTR MaLR -262 184 110 769 153 23 8 chr9 34694943 34695074 -107576370 - FLAM_C SINE Alu 0 133 1 299 213 56 137 chr9 34695474 34695671 -107575773 - MLT1J1 LTR MaLR -12 434 254 224 315 37 46 chr9 34695677 34695785 -107575659 - MIR SINE MIR -151 111 5 289 365 155 13 chr9 34695906 34696216 -107575228 - L3 LINE CR1 -201 1376 1023 2242 69 21 3 chr9 34696717 34697006 -107574438 + AluY SINE Alu 1 294 -17 353 301 65 85 chr9 34699279 34699677 -107571767 - L1M2 LINE L1 -5495 1354 965 318 271 85 39 chr9 34699678 34699807 -107571637 + MIR SINE MIR 20 154 -108 354 264 176 6 chr9 34700614 34700773 -107570671 - MIR SINE MIR -10 252 67 2375 73 7 0 chr9 34700877 34701178 -107570266 - AluY SINE Alu -8 303 1 1216 307 35 12 chr9 34701384 34701876 -107569568 + L2 LINE L2 2294 2796 -518 287 337 22 0 chr9 34701917 34702006 -107569438 + L2 LINE L2 2905 2995 -277 268 352 16 8 chr9 34702303 34702428 -107569016 + LTR67 LTR ERVL 432 557 0 301 333 9 9 chr9 34702458 34702569 -107568875 + L2 LINE L2 3162 3272 0 3310 200 24 45 chr9 34703057 34703223 -107568221 - L1ME1 LINE L1 -2 6164 5999 1014 256 50 99 chr9 34703223 34703699 -107567745 - L1MB1 LINE L1 -166 6002 5504 2418 89 0 0 chr9 34703699 34704003 -107567441 + AluSx SINE Alu 1 304 -8 1014 256 50 99 chr9 34704003 34704082 -107567362 - L1MB1 LINE L1 -664 5504 5423 2145 111 3 7 chr9 34704082 34704370 -107567074 + AluSx SINE Alu 1 287 -25 1014 256 50 99 chr9 34704370 34704590 -107566854 - L1MB1 LINE L1 -745 5423 5264 4576 232 55 35 chr9 34704591 34705130 -107566314 - L1MB1 LINE L1 -1530 4616 4089 673 191 0 52 chr9 34705130 34705266 -107566178 + FLAM_A SINE Alu 5 133 0 4576 232 55 35 chr9 34705266 34706355 -107565089 - L1MB1 LINE L1 -2057 4089 2955 6601 76 20 0 chr9 34706365 34707329 -107564115 - L1PA10 LINE L1 -3 6165 5200 473 246 43 5 chr9 34707329 34707516 -107563928 - L1MEc LINE L1 -5394 1002 809 280 284 46 0 chr9 34707502 34707611 -107563833 - L1MEc LINE L1 -5886 510 397 * 951 255 66 7 chr9 34707645 34707931 -107563513 - L1MEc LINE L1 -6055 341 39 2255 95 16 0 chr9 34708227 34708532 -107562912 + AluSp SINE Alu 1 310 -3 740 286 143 26 chr9 34709974 34710359 -107561085 + MLT1J2 LTR MaLR 21 450 0 2031 107 11 11 chr9 34711168 34711472 -107559972 - AluSx SINE Alu 0 306 3 1812 180 12 0 chr9 34711515 34711859 -107559585 + Tigger1 DNA MER2_type 1 348 -2070 * 7966 85 6 3 chr9 34711858 34713003 -107558441 + Tigger1 DNA MER2_type 826 1973 -445 3513 121 36 61 chr9 34713447 34714018 -107557426 + L1MA7 LINE L1 5587 6138 -153 2027 155 3 3 chr9 34714018 34714328 -107557116 - AluJb SINE Alu -2 310 1 3513 121 36 61 chr9 34714328 34714459 -107556985 + L1MA7 LINE L1 6138 6271 -20 858 141 0 8 chr9 34714463 34714591 -107556853 - FLAM_C SINE Alu -16 127 1 1936 176 82 37 chr9 34715658 34715690 -107555754 - L1MB8 LINE L1 0 6178 6149 2247 63 0 60 chr9 34715690 34716007 -107555437 + AluY SINE Alu 1 298 -13 1936 176 82 37 chr9 34716007 34716514 -107554930 - L1MB8 LINE L1 -29 6149 5615 735 134 22 30 chr9 34716619 34716753 -107554691 - FLAM_C SINE Alu 0 133 1 1031 141 7 0 chr9 34716776 34716950 -107554494 - AluJb SINE Alu 0 308 134 21 0 0 0 chr9 34717001 34717022 -107554422 + AT_rich Low_complexity Low_complexity 1 21 0 289 309 18 95 chr9 34717320 34717488 -107553956 - MIR3 SINE MIR -52 156 2 2163 115 26 0 chr9 34718056 34718360 -107553084 - AluSq SINE Alu -1 312 1 301 191 60 36 chr9 34718666 34718750 -107552694 - MIR SINE MIR 0 262 177 598 246 164 14 chr9 34719147 34719354 -107552090 - MIR SINE MIR -18 244 7 200 184 0 0 chr9 34721819 34721857 -107549587 + GA-rich Low_complexity Low_complexity 2 39 0 24 32 0 0 chr9 34722565 34722596 -107548848 + AT_rich Low_complexity Low_complexity 1 31 0 277 216 32 112 chr9 34723314 34723382 -107548062 - L2 LINE L2 0 3313 3258 2187 109 6 13 chr9 34723382 34723693 -107547751 - AluSg SINE Alu 0 310 2 277 216 32 112 chr9 34723693 34723749 -107547695 - L2 LINE L2 -55 3258 3199 341 303 149 79 chr9 34724264 34724524 -107546920 + L2 LINE L2 2413 2654 -660 2137 104 7 17 chr9 34724524 34724823 -107546621 - AluSx SINE Alu -16 296 1 341 303 149 79 chr9 34724823 34725080 -107546364 + L2 LINE L2 2654 2966 -348 186 333 99 0 chr9 34727487 34727568 -107543876 - L2 LINE L2 0 3272 3184 885 161 58 0 chr9 34727707 34727862 -107543582 + FRAM SINE Alu 11 174 -2 213 343 34 68 chr9 34727871 34728136 -107543308 - L2 LINE L2 -698 2616 2361 578 220 45 0 chr9 34728167 34728299 -107543145 + MER3 DNA MER1_type 61 198 -11 21 0 0 0 chr9 34728300 34728321 -107543123 + AT_rich Low_complexity Low_complexity 1 21 0 268 346 51 21 chr9 34728430 34728664 -107542780 - L2 LINE L2 -1005 2309 2069 276 285 132 14 chr9 34728903 34729047 -107542397 + L2 LINE L2 937 1097 -2217 727 164 0 55 chr9 34729111 34729257 -107542187 - FLAM_C SINE Alu -5 138 1 398 250 0 0 chr9 34729258 34729354 -107542090 - MER58 DNA MER1_type -114 101 6 233 346 152 14 chr9 34729357 34729574 -107541870 + L2 LINE L2 1100 1346 -1968 284 273 91 0 chr9 34729765 34729853 -107541591 - MLT1H LTR MaLR -204 345 250 283 237 193 30 chr9 34729855 34729990 -107541454 + L2 LINE L2 3051 3207 -106 536 263 253 18 chr9 34729998 34730283 -107541161 + L2 LINE L2 2397 2748 -566 1415 74 268 17 chr9 34730285 34730541 -107540903 + AluY SINE Alu 1 314 0 2054 123 10 27 chr9 34730709 34731010 -107540434 - AluSx SINE Alu -16 296 1 474 277 204 15 chr9 34731028 34731302 -107540142 + L2 LINE L2 2988 3313 0 937 42 0 8 chr9 34731345 34731464 -107539980 - L1PA10 LINE L1 -3 6165 6048 561 308 66 49 chr9 34731770 34732237 -107539207 + L1ME LINE L1 918 1392 -5539 257 244 61 0 chr9 34732421 34732503 -107538941 + L1ME LINE L1 1401 1487 -5444 374 234 50 44 chr9 34732524 34732788 -107538656 + L1ME LINE L1 1358 1797 -4888 * 553 269 89 34 chr9 34732782 34733109 -107538335 + L1ME LINE L1 2456 2800 -4322 266 164 73 0 chr9 34733317 34733372 -107538072 + L1ME LINE L1 3987 4045 -2896 231 243 27 0 chr9 34733388 34733462 -107537982 + L1ME LINE L1 4127 4202 -2739 1055 207 108 30 chr9 34733464 34733503 -107537941 - MER93a LTR ERV1 0 402 367 2137 121 6 13 chr9 34733503 34733817 -107537627 + AluSx SINE Alu 1 312 0 1055 207 108 30 chr9 34733817 34734100 -107537344 - MER93a LTR ERV1 -35 367 1 3225 216 90 99 chr9 34734100 34734832 -107536612 + L1ME LINE L1 4201 4938 -2021 1573 142 105 8 chr9 34734832 34735099 -107536345 + AluJb SINE Alu 1 293 -19 3225 216 90 99 chr9 34735099 34735280 -107536164 + L1ME LINE L1 4938 5119 -1840 2227 108 0 0 chr9 34735280 34735585 -107535859 - AluSx SINE Alu -7 305 1 3225 216 90 99 chr9 34735585 34735689 -107535755 + L1ME LINE L1 5119 5222 -1737 1017 122 0 112 chr9 34735689 34735886 -107535558 + FAM SINE Alu 1 175 0 3225 216 90 99 chr9 34735886 34736092 -107535352 + L1ME LINE L1 5222 5428 -1531 681 138 0 18 chr9 34736092 34736201 -107535243 + FRAM SINE Alu 68 174 -2 3225 216 90 99 chr9 34736201 34737109 -107534335 + L1ME LINE L1 5428 6422 -537 1376 192 0 28 chr9 34737949 34738240 -107533204 - SVA Other Other -276 1110 828 2191 195 100 112 chr9 34738298 34738364 -107533080 + L1ME2 LINE L1 4357 4422 -1742 1095 122 0 112 chr9 34738364 34738561 -107532883 + FAM SINE Alu 1 175 0 2191 195 100 112 chr9 34738561 34738767 -107532677 + L1ME2 LINE L1 4422 4629 -1535 687 136 0 18 chr9 34738767 34738877 -107532567 + FRAM SINE Alu 68 175 -1 2191 195 100 112 chr9 34738877 34739790 -107531654 + L1ME2 LINE L1 4629 5627 -537 389 194 28 2 chr9 34739804 34739895 -107531549 + L1ME2 LINE L1 6067 6162 -4 335 240 0 0 chr9 34740492 34740567 -107530877 - MIR SINE MIR -73 135 61 523 214 0 0 chr9 34741223 34741326 -107530118 - L1 LINE L1 -3451 2695 2593 * 34743 87 9 54 chr9 34741316 34747759 -107523685 - L1PA4 LINE L1 -1 6154 12 216 0 0 0 chr9 34747806 34747830 -107523614 + (A)n Simple_repeat Simple_repeat 1 24 0 837 268 0 11 chr9 34748239 34748429 -107523015 + AluJo SINE Alu 118 305 -7 358 231 98 10 chr9 34748826 34748950 -107522494 + MIR SINE MIR 50 188 -63 3791 101 38 23 chr9 34749949 34750553 -107520891 - LOR1-int LTR ERV1 -3321 4799 4187 17020 33 1 0 chr9 34750653 34753337 -107518107 + L1PA2 LINE L1 3470 6155 0 502 200 60 43 chr9 34753434 34753619 -107517825 + L1MC/D LINE L1 5260 5447 -2361 41635 35 24 2 chr9 34754099 34759903 -107511541 - L1PA4 LINE L1 -2 6153 218 966 239 54 28 chr9 34760004 34760394 -107511050 - L1MEc LINE L1 -2792 3423 3024 7086 77 24 5 chr9 34760401 34761377 -107510067 - L1PA10 LINE L1 0 6168 5191 554 234 29 6 chr9 34761385 34761556 -107509888 - L1MEc LINE L1 -5413 983 809 316 284 46 0 chr9 34761542 34761651 -107509793 - L1MEc LINE L1 -5886 510 397 * 1047 255 66 7 chr9 34761685 34761971 -107509473 - L1MEc LINE L1 -6055 341 39 2289 111 3 0 chr9 34762267 34762574 -107508870 + AluSp SINE Alu 1 308 -5 258 162 0 0 chr9 34762587 34762624 -107508820 + Alu SINE Alu 1 37 -264 * 297 79 0 0 chr9 34762623 34762661 -107508783 + FLAM SINE Alu 86 123 -10 488 188 69 31 chr9 34762684 34762844 -107508600 + MER20B DNA MER1_type 581 746 -37 1720 171 30 13 chr9 34763431 34763730 -107507714 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr9 34763944 34763966 -107507478 + AT_rich Low_complexity Low_complexity 1 22 0 201 293 13 13 chr9 34764148 34764223 -107507221 + GA-rich Low_complexity Low_complexity 2 76 0 26 0 0 0 chr9 34764658 34764684 -107506760 + AT_rich Low_complexity Low_complexity 1 26 0 186 333 0 0 chr9 34764716 34764773 -107506671 + L2 LINE L2 3257 3313 0 233 309 21 21 chr9 34764954 34765048 -107506396 - L2 LINE L2 -12 3301 3208 2255 121 0 0 chr9 34765424 34765729 -107505715 + AluSx SINE Alu 1 305 -7 2338 169 38 116 chr9 34765757 34766223 -107505221 - L1ME LINE L1 -361 5805 5304 1728 172 3 35 chr9 34766223 34766537 -107504907 - AluJo SINE Alu 0 312 9 2338 169 38 116 chr9 34766537 34767190 -107504254 - L1ME LINE L1 -862 5304 4747 24 0 0 0 chr9 34767696 34767720 -107503724 + AT_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr9 34767742 34767771 -107503673 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 246 314 20 69 chr9 34767817 34767919 -107503525 - L2 LINE L2 -82 3190 3094 1198 343 136 25 chr9 34767956 34769684 -107501760 + L2 LINE L2 1280 3240 -32 1469 188 34 35 chr9 34769693 34769743 -107501701 - MLT1D LTR MaLR 0 505 456 2029 104 7 0 chr9 34769743 34770012 -107501432 - AluSx SINE Alu -6 306 36 1469 188 34 35 chr9 34770012 34770408 -107501036 - MLT1D LTR MaLR -49 456 1 239 367 45 28 chr9 34770440 34770617 -107500827 - L2 LINE L2 -214 3058 2879 243 257 137 29 chr9 34771026 34771201 -107500243 - L1ME4a LINE L1 -14 6107 5914 530 275 87 106 chr9 34771865 34772232 -107499212 + L2 LINE L2 2903 3262 -10 218 333 125 0 chr9 34772242 34772338 -107499106 - L2 LINE L2 -8 3264 3157 2231 99 10 3 chr9 34772622 34772916 -107498528 - AluSx SINE Alu -16 296 1 2375 53 23 23 chr9 34778668 34778969 -107492475 - AluY SINE Alu -10 301 1 1957 129 7 7 chr9 34778979 34779266 -107492178 - AluSx SINE Alu -25 287 1 814 171 0 23 chr9 34779394 34779523 -107491921 - FLAM_C SINE Alu -7 126 1 1183 255 96 33 chr9 34779524 34780204 -107491240 - L1ME4a LINE L1 -259 5911 5176 995 101 20 7 chr9 34780236 34780385 -107491059 - AluSg/x SINE Alu -1 309 159 2011 254 75 31 chr9 34780452 34781196 -107490248 - L1MC4a LINE L1 -1776 6312 5536 364 315 9 30 chr9 34781263 34781523 -107489921 - L1MC4a LINE L1 -4752 1855 1449 1135 158 0 0 chr9 34781529 34781706 -107489738 - AluSx SINE Alu 0 310 134 625 141 0 0 chr9 34781706 34781791 -107489653 - AluSx SINE Alu -227 86 2 522 290 60 47 chr9 34781863 34782301 -107489143 - L1MCa LINE L1 -4905 1511 906 25 0 0 0 chr9 34782408 34782433 -107489011 + AT_rich Low_complexity Low_complexity 1 25 0 2530 279 61 41 chr9 34783030 34784149 -107487295 - L2 LINE L2 -105 3208 1980 2229 68 10 20 chr9 34784150 34784442 -107487002 + AluY SINE Alu 1 289 -22 522 124 0 0 chr9 34784442 34784531 -107486913 + (GGGGA)n Simple_repeat Simple_repeat 1 89 0 25 31 0 0 chr9 34785067 34785099 -107486345 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 34785305 34785326 -107486118 + AT_rich Low_complexity Low_complexity 1 21 0 6626 84 17 0 chr9 34785473 34786635 -107484809 - L1PA14 LINE L1 -1 6160 4981 189 107 0 0 chr9 34786723 34786751 -107484693 + (CAT)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr9 34786840 34786861 -107484583 + AT_rich Low_complexity Low_complexity 1 21 0 434 298 38 42 chr9 34786983 34787151 -107484293 - MIR SINE MIR -63 145 5 1845 115 0 83 chr9 34787265 34787579 -107483865 - AluSx SINE Alu -24 288 1 2408 91 0 0 chr9 34788372 34788680 -107482764 + AluY SINE Alu 1 308 -3 1288 153 115 10 chr9 34788933 34789221 -107482223 - MER33 DNA MER1_type -6 318 1 275 215 62 132 chr9 34789394 34789462 -107481982 + MIR SINE MIR 6 60 -202 2012 103 0 81 chr9 34789462 34789783 -107481661 + AluSg SINE Alu 1 295 -15 275 215 62 132 chr9 34789783 34789858 -107481586 + MIR SINE MIR 60 139 -123 344 339 81 11 chr9 34790293 34790479 -107480965 + MIR SINE MIR 10 208 -54 872 261 33 8 chr9 34791388 34791629 -107479815 + MIR SINE MIR 6 252 -10 548 327 10 35 chr9 34791818 34792020 -107479424 - MIR3 SINE MIR -7 201 5 1425 215 115 40 chr9 34792382 34792854 -107478590 + MLT1F1 LTR MaLR 3 506 -59 207 0 0 0 chr9 34793143 34793166 -107478278 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 10963 137 49 4 chr9 34793500 34795222 -107476222 + L1PA14 LINE L1 1032 2831 -4750 * 17795 176 16 5 chr9 34795211 34799492 -107471952 + L1PA14 LINE L1 3275 7599 0 2164 131 0 0 chr9 34799692 34799989 -107471455 - AluSx SINE Alu -15 297 1 1024 103 12 6 chr9 34800013 34800178 -107471266 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 335 274 33 72 chr9 34800863 34801016 -107470428 + MIR SINE MIR 37 183 -79 * 647 265 114 9 chr9 34800997 34801208 -107470236 - MIR SINE MIR -21 241 9 30 0 0 0 chr9 34801799 34801829 -107469615 + AT_rich Low_complexity Low_complexity 1 30 0 284 253 117 93 chr9 34802040 34802202 -107469242 - MIR3 SINE MIR -10 198 33 378 276 32 65 chr9 34802426 34802533 -107468911 - MIR SINE MIR -70 192 83 2323 126 54 14 chr9 34802533 34802883 -107468561 - THE1B LTR MaLR 0 364 1 12313 82 32 1 chr9 34802883 34804416 -107467028 - THE1B-int LTR MaLR 0 1580 1 2264 104 72 23 chr9 34804416 34804763 -107466681 - THE1B LTR MaLR 0 364 1 378 276 32 65 chr9 34804763 34804838 -107466606 - MIR SINE MIR -176 86 14 214 267 89 10 chr9 34805808 34805909 -107465535 + L2 LINE L2 1904 2012 -1302 1005 272 16 4 chr9 34805947 34806193 -107465251 - MIR SINE MIR -12 250 2 659 156 9 0 chr9 34806219 34806328 -107465116 - MLT1A2 LTR MaLR 0 374 265 775 282 97 0 chr9 34806811 34807070 -107464374 + MLT1H LTR MaLR 266 549 0 1261 147 41 9 chr9 34807629 34807847 -107463597 + AluJo SINE Alu 87 311 -1 597 295 50 30 chr9 34807962 34808162 -107463282 + MIR3 SINE MIR 1 204 -4 2395 144 53 5 chr9 34808488 34808883 -107462561 - MSTA LTR MaLR -14 414 1 478 217 0 62 chr9 34809033 34809162 -107462282 - L2 LINE L2 0 3313 3193 262 288 143 114 chr9 34809378 34809771 -107461673 - L2 LINE L2 -1 3271 2868 449 250 23 93 chr9 34809783 34809914 -107461530 + MER5B DNA MER1_type 13 131 -47 2299 100 0 3 chr9 34809914 34810213 -107461231 + AluSc SINE Alu 1 298 -11 449 250 23 93 chr9 34810213 34810253 -107461191 + MER5B DNA MER1_type 131 172 -6 628 250 58 23 chr9 34810277 34810322 -107461122 - MER5A DNA MER1_type 0 189 147 3709 114 39 4 chr9 34810322 34810855 -107460589 + L1PB3 LINE L1 5596 6147 -7 628 250 58 23 chr9 34810855 34810981 -107460463 - MER5A DNA MER1_type -42 147 12 775 201 63 6 chr9 34810996 34811155 -107460289 + MER5A DNA MER1_type 1 168 -21 1798 93 22 0 chr9 34811297 34811522 -107459922 + MER30 DNA MER1_type 1 230 0 295 234 11 64 chr9 34812064 34812158 -107459286 + MIR3 SINE MIR 68 156 -52 5492 74 15 21 chr9 34812480 34813199 -107458245 + L1PA8 LINE L1 5445 6159 -13 358 284 58 39 chr9 34813255 34813410 -107458034 + Charlie8 DNA MER1_type 1 158 -2259 487 237 7 29 chr9 34815131 34815270 -107456174 + MIR3 SINE MIR 68 203 -5 390 248 61 71 chr9 34815577 34815775 -107455669 + MIR3 SINE MIR 9 204 -4 301 295 93 14 chr9 34816309 34816448 -107454996 + MER5A DNA MER1_type 7 156 -33 2197 103 0 10 chr9 34816623 34816913 -107454531 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr9 34817234 34817256 -107454188 + (T)n Simple_repeat Simple_repeat 1 22 0 2251 112 0 0 chr9 34817531 34817836 -107453608 - AluSx SINE Alu -7 305 1 27 0 0 0 chr9 34818548 34818575 -107452869 + AT_rich Low_complexity Low_complexity 1 27 0 739 335 129 45 chr9 34819610 34820682 -107450762 + L2 LINE L2 863 2024 -1290 265 276 281 5 chr9 34820702 34820912 -107450532 + L2 LINE L2 2222 2489 -825 203 61 30 0 chr9 34823446 34823479 -107447965 + (TC)n Simple_repeat Simple_repeat 2 35 0 351 0 0 0 chr9 34823479 34823518 -107447926 + (CA)n Simple_repeat Simple_repeat 1 39 0 554 285 7 7 chr9 34823808 34823945 -107447499 + MIR SINE MIR 21 157 -105 799 154 32 19 chr9 34823981 34824137 -107447307 + L1MA1 LINE L1 14 171 -7394 * 11825 171 14 14 chr9 34824135 34825386 -107446058 + L1MA1 LINE L1 3200 4449 -3116 2112 103 43 0 chr9 34825386 34825668 -107445776 + AluY SINE Alu 10 303 -8 11825 171 14 14 chr9 34825668 34827083 -107444361 + L1MA1 LINE L1 4449 5867 -1698 41020 62 10 6 chr9 34827094 34833214 -107438230 + L1PA4 LINE L1 11 6153 -2 2077 124 7 0 chr9 34833606 34833888 -107437556 + AluSx SINE Alu 1 284 -28 21 82 0 0 chr9 34834363 34834412 -107437032 + AT_rich Low_complexity Low_complexity 1 49 0 7256 106 20 36 chr9 34834870 34836786 -107434658 + L1MA1 LINE L1 5851 7721 0 186 290 101 0 chr9 34836809 34836878 -107434566 + MIR SINE MIR 166 241 -21 5502 86 32 62 chr9 34836890 34837781 -107433663 + SVA Other Other 522 1386 0 2184 25 0 0 chr9 34837941 34838181 -107433263 + L1PA4 LINE L1 5916 6155 0 384 278 45 15 chr9 34839350 34839483 -107431961 + MIR3 SINE MIR 3 139 -69 331 269 151 0 chr9 34841407 34841526 -107429918 + MIR SINE MIR 75 211 -51 559 238 127 79 chr9 34843568 34843883 -107427561 - MLT1K LTR MaLR -50 538 209 309 274 137 16 chr9 34844116 34844240 -107427204 + L2 LINE L2 2920 3058 -214 2172 204 102 11 chr9 34844554 34845074 -107426370 + MLT1F1 LTR MaLR 1 567 0 205 225 0 0 chr9 34847619 34847659 -107423785 + MER5B DNA MER1_type 10 49 -129 289 352 99 0 chr9 34848568 34848730 -107422714 - MIR SINE MIR -11 251 74 316 266 58 50 chr9 34849785 34850026 -107421418 + L2 LINE L2 2864 3106 -166 234 200 40 0 chr9 34850108 34850158 -107421286 + L2 LINE L2 3220 3271 -1 497 274 124 69 chr9 34850914 34851293 -107420151 - MLT1K LTR MaLR -90 498 99 1495 198 22 19 chr9 34851328 34851596 -107419848 + AluJo SINE Alu 1 269 -43 552 104 0 0 chr9 34851598 34851675 -107419769 + MADE1 DNA Mariner 1 77 -3 535 247 63 35 chr9 34851959 34852133 -107419311 - MER20B DNA MER1_type -604 179 1 342 365 122 22 chr9 34852528 34852898 -107418546 + L3 LINE CR1 1067 1473 -104 2429 82 0 32 chr9 34852988 34853329 -107418115 + MER41A LTR ERV1 1 330 -224 43119 37 24 1 chr9 34853329 34859338 -107412106 + L1PA2 LINE L1 4 6155 0 1761 77 25 0 chr9 34859352 34859587 -107411857 + MER41A LTR ERV1 314 554 0 181 158 26 0 chr9 34860938 34860976 -107410468 - L2 LINE L2 -4 3268 3230 183 293 38 115 chr9 34861859 34862016 -107409428 + L2 LINE L2 2915 3059 -213 225 94 0 0 chr9 34862056 34862088 -107409356 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1216 142 90 5 chr9 34862092 34862303 -107409141 - AluJb SINE Alu -29 283 55 257 303 118 25 chr9 34862370 34862489 -107408955 + L2 LINE L2 3143 3272 0 204 125 0 0 chr9 34863324 34863356 -107408088 + (T)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr9 34863360 34863397 -107408047 + AT_rich Low_complexity Low_complexity 1 37 0 1056 90 0 0 chr9 34863404 34863548 -107407896 - L1PA10 LINE L1 -4 6164 6021 334 56 19 19 chr9 34864906 34864960 -107406484 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 216 255 0 61 chr9 34865714 34865812 -107405632 + GA-rich Low_complexity Low_complexity 4 95 0 381 304 57 18 chr9 34866080 34866425 -107405019 - LTR16C LTR ERVL -47 410 71 240 299 154 0 chr9 34867032 34867149 -107404295 - MIR SINE MIR -75 187 53 413 276 0 0 chr9 34867538 34867636 -107403808 - MLT1K LTR MaLR -329 259 162 1048 232 172 76 chr9 34867773 34868262 -107403182 - MLT1G3 LTR MaLR -33 535 1 2047 103 30 30 chr9 34868451 34868752 -107402692 - AluSc SINE Alu -8 301 1 327 25 0 0 chr9 34869111 34869151 -107402293 + (CA)n Simple_repeat Simple_repeat 2 41 0 2198 113 3 0 chr9 34869414 34869714 -107401730 - AluJb SINE Alu -11 301 1 195 289 0 0 chr9 34870133 34870185 -107401259 + L2 LINE L2 3262 3313 0 502 230 33 26 chr9 34870495 34870647 -107400797 + MER103 DNA DNA 4 156 -10 1502 102 0 0 chr9 34871086 34871273 -107400171 - AluSc SINE Alu -17 292 106 872 118 7 22 chr9 34871279 34871414 -107400030 - FLAM_C SINE Alu 0 143 11 347 276 121 40 chr9 34871519 34871817 -107399627 + L1MC/D LINE L1 4533 4854 -1292 3257 146 87 0 chr9 34871909 34872471 -107398973 - MER73 LTR ERVL -32 612 2 43443 37 21 1 chr9 34872649 34878682 -107392762 + L1PA2 LINE L1 1 6155 0 483 200 60 43 chr9 34878779 34878964 -107392480 + L1MC/D LINE L1 5260 5447 -2361 180 0 0 0 chr9 34879123 34879143 -107392301 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr9 34879189 34879219 -107392225 + AT_rich Low_complexity Low_complexity 1 30 0 260 277 61 34 chr9 34881189 34881337 -107390107 - MER117 DNA MER1_type -39 158 7 871 187 23 6 chr9 34881351 34881522 -107389922 - MER20 DNA MER1_type 0 219 46 544 323 39 22 chr9 34881964 34882193 -107389251 - MIR SINE MIR -10 252 20 955 193 11 11 chr9 34882625 34882812 -107388632 - MER5A DNA MER1_type 0 189 3 1990 142 0 10 chr9 34884541 34884837 -107386607 - AluSx SINE Alu -19 293 1 452 269 159 10 chr9 34884911 34885119 -107386325 - MIR SINE MIR -1 261 23 2538 156 26 22 chr9 34887020 34887514 -107383930 - MER11A LTR ERVK -1 1265 770 1378 61 0 0 chr9 34887510 34887675 -107383769 - MER11B LTR ERVK -1071 165 1 * 3536 142 35 57 chr9 34888180 34888877 -107382567 + L1MA7 LINE L1 5594 6276 -15 1745 126 4 11 chr9 34888877 34889138 -107382306 + AluSx SINE Alu 54 312 0 3536 142 35 57 chr9 34889138 34889154 -107382290 + L1MA7 LINE L1 6276 6291 0 308 364 55 0 chr9 34889778 34889888 -107381556 - MIR SINE MIR -126 136 21 546 290 148 23 chr9 34890754 34890971 -107380473 + MIR SINE MIR 17 260 -2 2545 248 141 48 chr9 34891162 34891315 -107380129 - L1MEc LINE L1 -2196 4019 3882 3048 107 26 22 chr9 34891315 34891772 -107379672 - L1PB1 LINE L1 -3 6148 5690 2545 248 141 48 chr9 34891772 34893319 -107378125 - L1MEc LINE L1 -2333 3882 2106 430 268 71 28 chr9 34893322 34893676 -107377768 - L1MEc LINE L1 -4974 1422 1054 2144 136 0 3 chr9 34894080 34894382 -107377062 + AluSq SINE Alu 1 301 -12 361 171 23 11 chr9 34894401 34894489 -107376955 + A-rich Low_complexity Low_complexity 3 91 0 209 211 26 0 chr9 34894718 34894756 -107376688 + MIR SINE MIR 206 244 -18 * 226 167 93 19 chr9 34894722 34894776 -107376668 + L2 LINE L2 3256 3313 0 2142 118 3 20 chr9 34895462 34895596 -107375848 + AluSx SINE Alu 1 136 -176 2316 92 3 3 chr9 34895596 34895899 -107375545 + AluSp SINE Alu 1 303 -10 2142 118 3 20 chr9 34895899 34896070 -107375374 + AluSx SINE Alu 136 301 -11 456 230 153 37 chr9 34896197 34896396 -107375048 - MLT1K LTR MaLR -248 340 140 235 294 20 59 chr9 34896836 34896938 -107374506 + MIR SINE MIR 31 128 -80 343 357 101 12 chr9 34897431 34897599 -107373845 + MIR3 SINE MIR 16 198 -10 190 363 0 25 chr9 34898071 34898151 -107373293 + L2 LINE L2 2988 3065 -207 1203 272 78 23 chr9 34898179 34898665 -107372779 - LTR33 LTR ERVL -2 519 7 226 284 174 18 chr9 34898762 34898871 -107372573 + L2 LINE L2 3180 3305 -8 4419 100 58 75 chr9 34899062 34899861 -107371583 - LTR1 LTR ERV1 0 785 1 1055 133 66 0 chr9 34899918 34900084 -107371360 + L1PB3 LINE L1 5978 6154 0 559 147 31 54 chr9 34900095 34900224 -107371220 + LTR37A LTR ERV1 46 171 -255 484 242 93 6 chr9 34900496 34900657 -107370787 + L1ME3A LINE L1 4565 4739 -1407 1911 272 64 27 chr9 34900662 34901147 -107370297 + L1ME3A LINE L1 4783 5249 -921 2456 85 0 0 chr9 34901147 34901454 -107369990 - AluY SINE Alu -4 307 1 1911 272 64 27 chr9 34901454 34902095 -107369349 + L1ME3A LINE L1 5249 5951 -219 987 219 105 42 chr9 34902133 34902465 -107368979 - MLT1G LTR MaLR -7 583 156 235 172 31 31 chr9 34902558 34902622 -107368822 - MLT1G LTR MaLR -459 83 20 310 298 2 56 chr9 34902669 34902784 -107368660 + L1ME3A LINE L1 5970 6078 -84 362 236 30 73 chr9 34902956 34903121 -107368323 + L1ME4a LINE L1 5961 6118 -3 786 236 15 26 chr9 34903650 34903845 -107367599 + MIR SINE MIR 56 248 -14 338 276 46 106 chr9 34903908 34904125 -107367319 - MIR SINE MIR -30 232 29 335 154 26 26 chr9 34905555 34905633 -107365811 - MIR3 SINE MIR -6 202 125 569 253 79 62 chr9 34906137 34906442 -107365002 - L1ME4a LINE L1 -238 5883 5574 240 86 35 17 chr9 34906442 34906500 -107364944 + T-rich Low_complexity Low_complexity 2 60 0 248 267 58 12 chr9 34906792 34906878 -107364566 + L1ME4a LINE L1 6000 6089 -32 1016 199 46 32 chr9 34906895 34906994 -107364450 - MER20 DNA MER1_type 0 219 123 2386 122 130 16 chr9 34906994 34907378 -107364066 + MSTA LTR MaLR 1 428 0 1016 199 46 32 chr9 34907378 34907494 -107363950 - MER20 DNA MER1_type -96 123 1 903 265 50 0 chr9 34907563 34907801 -107363643 - MIR SINE MIR 0 262 13 242 188 31 31 chr9 34908089 34908153 -107363291 + CT-rich Low_complexity Low_complexity 3 66 0 227 189 19 0 chr9 34908167 34908220 -107363224 + CT-rich Low_complexity Low_complexity 4 57 0 1247 253 87 9 chr9 34908558 34909004 -107362440 - LTR16C LTR ERVL -8 483 3 328 239 77 51 chr9 34909029 34909146 -107362298 - L2 LINE L2 0 3272 3153 25 51 0 0 chr9 34909247 34909286 -107362158 + AT_rich Low_complexity Low_complexity 1 39 0 270 313 10 20 chr9 34909381 34909480 -107361964 - MIR3 SINE MIR -102 106 9 185 302 0 0 chr9 34909499 34909542 -107361902 + L2 LINE L2 3208 3250 -22 2417 192 27 10 chr9 34909598 34910077 -107361367 - L1MB7 LINE L1 -153 6267 5781 21 57 0 0 chr9 34910077 34910112 -107361332 + AT_rich Low_complexity Low_complexity 1 35 0 1194 163 0 0 chr9 34911600 34911803 -107359641 - L1MA3 LINE L1 0 6305 6103 478 229 69 0 chr9 34911815 34911959 -107359485 - L1ME3A LINE L1 -10 6160 6007 1143 163 79 40 chr9 34912851 34913128 -107358316 + L1MA8 LINE L1 6003 6290 -1 903 196 43 0 chr9 34913432 34913595 -107357849 + AluJb SINE Alu 130 299 -13 354 204 29 0 chr9 34913595 34913698 -107357746 + GA-rich Low_complexity Low_complexity 1 106 0 205 67 33 0 chr9 34913698 34913728 -107357716 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 2264 92 0 0 chr9 34913737 34914210 -107357234 + AluY SINE Alu 1 311 0 918 143 12 119 chr9 34914210 34914345 -107357099 + L1 LINE L1 3447 3549 -2597 3684 142 29 11 chr9 34914345 34914972 -107356472 + L1MA4 LINE L1 5662 6299 -1 918 143 12 119 chr9 34914972 34915071 -107356373 + L1 LINE L1 3549 3657 -2489 * 10302 208 86 55 chr9 34915065 34916696 -107354748 - L1MB7 LINE L1 -931 5451 3871 755 177 24 8 chr9 34916696 34916820 -107354624 - AluJo SINE Alu -173 139 14 10302 208 86 55 chr9 34916820 34917314 -107354130 - L1MB7 LINE L1 -2511 3871 3394 1397 147 92 55 chr9 34917314 34917616 -107353828 - AluJb SINE Alu 0 312 1 10302 208 86 55 chr9 34917616 34919533 -107351911 - L1MB7 LINE L1 -2988 3394 1128 902 187 0 7 chr9 34919563 34919713 -107351731 + FAM SINE Alu 10 158 -27 1462 163 74 131 chr9 34919853 34920288 -107351156 + MLT2D LTR ERVL 5 414 0 1259 122 15 24 chr9 34920669 34920907 -107350537 - AluSq SINE Alu 0 337 102 713 215 139 0 chr9 34920958 34921102 -107350342 - FAM SINE Alu -11 164 1 195 288 0 45 chr9 34921167 34921233 -107350211 + L2 LINE L2 3250 3312 -1 358 109 0 0 chr9 34921233 34921279 -107350165 - THE1A LTR MaLR 0 355 310 1250 148 0 0 chr9 34921383 34921566 -107349878 + AluSg/x SINE Alu 120 302 -8 498 304 30 30 chr9 34921765 34922101 -107349343 - L1M4 LINE L1 -1315 4831 4496 1961 141 7 0 chr9 34923220 34923503 -107347941 - AluSx SINE Alu -27 285 1 596 289 101 31 chr9 34923607 34923835 -107347609 + MLT1I LTR MaLR 166 409 0 385 284 73 9 chr9 34923849 34923958 -107347486 + L2 LINE L2 3193 3308 -5 289 284 0 12 chr9 34923969 34924050 -107347394 + MIR3 SINE MIR 128 207 -1 305 366 36 0 chr9 34924611 34924723 -107346721 - MIR3 SINE MIR -7 201 86 212 311 16 49 chr9 34924748 34924870 -107346574 - L2 LINE L2 -780 2534 2417 714 116 9 0 chr9 34924870 34924982 -107346462 + Ricksha DNA DNA 2 114 -1932 517 321 58 49 chr9 34924984 34925330 -107346114 - L2 LINE L2 -975 2339 1991 321 307 113 41 chr9 34925747 34926109 -107345335 + L2 LINE L2 2440 2827 -487 579 251 80 27 chr9 34926183 34926370 -107345074 - MIR SINE MIR -13 249 53 208 261 7 7 chr9 34927757 34927899 -107343545 + GA-rich Low_complexity Low_complexity 1 142 0 307 291 24 63 chr9 34930371 34930498 -107340946 + MIR3 SINE MIR 83 204 -4 242 239 26 94 chr9 34932163 34932280 -107339164 - L1ME4a LINE L1 -72 6049 5941 1985 119 7 18 chr9 34933674 34933986 -107337458 - AluSx SINE Alu 0 309 1 242 328 74 67 chr9 34934118 34934417 -107337027 + L2 LINE L2 2922 3222 -50 21 0 0 0 chr9 34935460 34935481 -107335963 + AT_rich Low_complexity Low_complexity 1 21 0 5500 148 57 10 chr9 34935938 34936107 -107335337 + L1MA7 LINE L1 5082 5242 -1049 2552 113 16 19 chr9 34936107 34936470 -107334974 - THE1B LTR MaLR 0 364 3 5500 148 57 10 chr9 34936470 34937456 -107333988 + L1MA7 LINE L1 5242 6291 0 1371 205 59 62 chr9 34937474 34937864 -107333580 + MSTD LTR MaLR 8 396 0 505 209 11 0 chr9 34938422 34938513 -107332931 - MER5A DNA MER1_type 0 189 98 737 215 139 0 chr9 34938579 34938723 -107332721 - FAM SINE Alu -11 164 1 2285 121 75 26 chr9 34938854 34939201 -107332243 - THE1B LTR MaLR 0 364 1 12933 84 4 0 chr9 34939201 34940775 -107330669 - THE1B-int LTR MaLR 0 1580 1 2316 116 78 20 chr9 34940775 34941119 -107330325 - THE1B LTR MaLR 0 364 1 1004 118 0 0 chr9 34942307 34942442 -107329002 + FLAM_C SINE Alu 2 136 -7 3511 150 51 8 chr9 34942451 34943059 -107328385 + L1MA4 LINE L1 5661 6294 -6 39 0 0 0 chr9 34943059 34943098 -107328346 + AT_rich Low_complexity Low_complexity 1 39 0 1988 155 0 3 chr9 34943113 34943416 -107328028 - AluJb SINE Alu -10 302 1 1023 183 44 28 chr9 34943550 34943767 -107327677 - L1MC4 LINE L1 -811 7231 7008 312 28 0 0 chr9 34943767 34943803 -107327641 - L1MA9 LINE L1 0 6312 6277 1023 183 44 28 chr9 34943803 34943836 -107327608 - L1MC4 LINE L1 -1034 7008 6977 476 241 48 7 chr9 34943837 34943982 -107327462 - L1MC4 LINE L1 -997 7045 6895 2749 214 74 14 chr9 34943985 34944586 -107326858 + L1MC4 LINE L1 7281 7932 -110 1677 207 125 3 chr9 34944586 34944939 -107326505 + MSTD LTR MaLR 1 396 0 2749 214 74 14 chr9 34944939 34945042 -107326402 + L1MC4 LINE L1 7932 8027 -15 1576 271 88 11 chr9 34945204 34945658 -107325786 - LTR16C LTR ERVL 0 491 3 1860 157 45 33 chr9 34945745 34946076 -107325368 - MER1B DNA MER1_type 0 337 3 8802 158 62 21 chr9 34946757 34948349 -107323095 + L1MC1 LINE L1 29 1555 -4871 1508 205 34 3 chr9 34948349 34948646 -107322798 + AluJo SINE Alu 1 306 -6 8802 158 62 21 chr9 34948646 34948664 -107322780 + L1MC1 LINE L1 1555 1571 -4855 615 27 0 0 chr9 34948664 34948737 -107322707 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 8802 158 62 21 chr9 34948737 34949567 -107321877 + L1MC1 LINE L1 1571 2366 -4060 1340 218 56 68 chr9 34949567 34949921 -107321523 + MLT1B LTR MaLR 1 351 -39 1445 211 10 22 chr9 34949921 34950233 -107321211 - AluJo SINE Alu -4 308 1 1340 218 56 68 chr9 34950233 34950273 -107321171 + MLT1B LTR MaLR 351 390 0 8802 158 62 21 chr9 34950273 34951154 -107320290 + L1MC1 LINE L1 2366 3576 -2850 7939 181 32 36 chr9 34951521 34953544 -107317900 + L1MC1 LINE L1 3532 5569 -1044 2113 112 0 4 chr9 34953544 34953822 -107317622 + AluSc SINE Alu 1 277 -32 7939 181 32 36 chr9 34953822 34954861 -107316583 + L1MC1 LINE L1 5569 6611 -2 207 69 0 0 chr9 34955023 34955052 -107316392 + (TG)n Simple_repeat Simple_repeat 2 30 0 2228 110 0 10 chr9 34955613 34955913 -107315531 + AluSq SINE Alu 1 297 -16 228 74 0 0 chr9 34956003 34956030 -107315414 - L1PB3 LINE L1 -65 6089 6063 2154 130 7 0 chr9 34956031 34956339 -107315105 + AluSx SINE Alu 3 312 0 2798 173 122 58 chr9 34957743 34957925 -107313519 + LTR48 LTR ERV1 1 170 -617 1942 84 4 0 chr9 34957925 34958175 -107313269 + L1PA14 LINE L1 5894 6144 -17 2798 173 122 58 chr9 34958175 34958190 -107313254 + LTR48 LTR ERV1 170 183 -604 2130 132 3 0 chr9 34958190 34958501 -107312943 + AluSx SINE Alu 1 312 0 2798 173 122 58 chr9 34958501 34959042 -107312402 + LTR48 LTR ERV1 183 787 0 2325 78 3 0 chr9 34959337 34959633 -107311811 + AluSg SINE Alu 1 297 -13 218 333 0 0 chr9 34959634 34959694 -107311750 + MIR SINE MIR 181 240 -22 182 217 181 0 chr9 34962124 34962207 -107309237 - MIR SINE MIR -66 142 45 635 66 0 0 chr9 34962799 34962875 -107308569 - FLAM_A SINE Alu -33 109 34 2308 84 3 17 chr9 34963651 34963948 -107307496 - AluSg SINE Alu -17 293 1 316 178 22 78 chr9 34963952 34964042 -107307402 + MER113 DNA MER1_type? 38 122 -399 * 376 261 68 34 chr9 34964029 34964205 -107307239 + MER113 DNA MER1_type? 296 477 -44 767 100 0 0 chr9 34964208 34964308 -107307136 + HY1 scRNA scRNA 1 100 -12 194 31 0 62 chr9 34964311 34964343 -107307101 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 470 321 24 19 chr9 34965250 34965459 -107305985 - MIR SINE MIR 0 262 53 2047 164 105 48 chr9 34965846 34966323 -107305121 + MER67D LTR ERV1 6 509 -5 2155 203 45 91 chr9 34966699 34967280 -107304164 + MLT2B3 LTR ERVL 1 554 0 3930 162 55 9 chr9 34967598 34968240 -107303204 + LTR51 LTR ERV1 1 671 0 2627 210 48 6 chr9 34968370 34968889 -107302555 + MER87 LTR ERV1 1 541 0 222 333 111 0 chr9 34969032 34969131 -107302313 - MIR SINE MIR -17 245 136 321 305 139 51 chr9 34969347 34969799 -107301645 - L2 LINE L2 -891 2423 1932 790 265 56 5 chr9 34969887 34970102 -107301342 - MIR SINE MIR 0 262 37 245 292 39 31 chr9 34970353 34970483 -107300961 - L2 LINE L2 -4 3268 3138 1055 99 21 0 chr9 34970723 34970865 -107300579 + L1PB3 LINE L1 6008 6152 -2 24 32 0 0 chr9 34970865 34970896 -107300548 + AT_rich Low_complexity Low_complexity 1 31 0 1297 219 182 25 chr9 34970924 34971326 -107300118 + MER4C LTR ERV1 1 465 0 288 301 0 0 chr9 34971429 34971512 -107299932 - L2 LINE L2 -513 2801 2719 183 276 152 0 chr9 34972133 34972238 -107299206 - L2 LINE L2 -2405 909 789 936 193 155 98 chr9 34972315 34972417 -107299027 + MER34 LTR ERV1 1 96 -446 2508 52 7 3 chr9 34972417 34972727 -107298717 + AluY SINE Alu 1 311 0 936 193 155 98 chr9 34972727 34973122 -107298322 + MER34 LTR ERV1 96 526 -16 277 284 23 23 chr9 34973803 34973891 -107297553 + MIR SINE MIR 172 259 -3 372 43 0 0 chr9 34973892 34973938 -107297506 + (TTA)n Simple_repeat Simple_repeat 3 48 0 747 314 107 25 chr9 34974839 34975467 -107295977 - L2 LINE L2 -650 2664 1986 821 112 17 9 chr9 34975471 34975587 -107295857 + AluSq/x SINE Alu 2 118 -194 484 223 80 46 chr9 34976079 34976254 -107295190 + Charlie8 DNA MER1_type 107 287 -2130 239 240 90 30 chr9 34976336 34976436 -107295008 - L2 LINE L2 -23 3290 3185 195 42 0 0 chr9 34977366 34977390 -107294054 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 696 243 115 35 chr9 34977410 34977636 -107293808 + MIR SINE MIR 4 247 -15 1830 216 42 12 chr9 34977922 34978400 -107293044 - L1ME1 LINE L1 -7 6159 5672 723 191 65 94 chr9 34978763 34978792 -107292652 + L1ME3 LINE L1 5893 5921 -241 2591 144 65 0 chr9 34978792 34979194 -107292250 + MSTC LTR MaLR 1 428 0 723 191 65 94 chr9 34979194 34979441 -107292003 + L1ME3 LINE L1 5921 6161 -1 183 234 0 64 chr9 34979501 34979548 -107291896 + L2 LINE L2 3254 3297 -16 2014 147 0 0 chr9 34979555 34979847 -107291597 + AluSx SINE Alu 6 297 -15 201 244 0 0 chr9 34981777 34981818 -107289626 + (CA)n Simple_repeat Simple_repeat 1 41 0 1537 251 54 68 chr9 34982770 34983438 -107288006 + MER77 LTR ERV1 54 671 -6 834 225 122 0 chr9 34983672 34983894 -107287550 - MIR SINE MIR -3 259 11 231 284 12 49 chr9 34983933 34984014 -107287430 - L2 LINE L2 -791 2523 2446 306 312 177 21 chr9 34984072 34984213 -107287231 + MIR3 SINE MIR 14 176 -32 719 272 73 32 chr9 34984233 34984479 -107286965 + MIR SINE MIR 7 262 0 24 32 0 0 chr9 34984563 34984594 -107286850 + AT_rich Low_complexity Low_complexity 1 31 0 311 252 55 79 chr9 34985537 34985664 -107285780 + L2 LINE L2 3149 3272 0 1279 209 7 7 chr9 34986813 34987086 -107284358 - AluJo SINE Alu 0 312 40 207 194 0 0 chr9 34987253 34987289 -107284155 + MIR SINE MIR 111 146 -116 337 247 0 13 chr9 34988967 34989044 -107282400 - L2 LINE L2 -9 3304 3229 2411 128 11 40 chr9 34989717 34990092 -107281352 - THE1B LTR MaLR 0 364 1 323 280 295 10 chr9 34990426 34990626 -107280818 - MIR SINE MIR -4 258 2 2007 147 0 3 chr9 34990646 34990945 -107280499 - AluSg SINE Alu -10 300 3 534 289 158 11 chr9 34991039 34991312 -107280132 - L2 LINE L2 -1251 2063 1751 899 182 6 38 chr9 34991358 34991517 -107279927 + FRAM SINE Alu 1 154 -12 26 0 0 0 chr9 34991517 34991543 -107279901 + AT_rich Low_complexity Low_complexity 1 26 0 411 335 150 10 chr9 34991570 34991770 -107279674 - MIR SINE MIR -10 252 25 3285 275 113 36 chr9 34991899 34993442 -107278002 + L2 LINE L2 1628 3313 0 221 298 50 66 chr9 34993430 34993551 -107277893 - L2 LINE L2 -1718 1596 1478 * 2084 124 0 0 chr9 34993910 34994228 -107277216 - AluSx SINE Alu 0 318 1 939 162 0 14 chr9 34994272 34994420 -107277024 - AluJo SINE Alu -166 146 1 273 316 46 11 chr9 34994449 34994623 -107276821 - L2 LINE L2 -1193 2121 1942 625 250 17 17 chr9 34994740 34994912 -107276532 + MER5B DNA MER1_type 1 172 -6 2133 120 45 48 chr9 34995095 34995471 -107275973 - THE1C LTR MaLR 0 375 1 618 294 60 24 chr9 34995589 34995841 -107275603 - MIR SINE MIR 0 262 2 21 0 0 0 chr9 34997114 34997135 -107274309 + AT_rich Low_complexity Low_complexity 1 21 0 1743 186 0 10 chr9 34997143 34997454 -107273990 + AluJb SINE Alu 1 308 -4 200 329 7 103 chr9 34997454 34997552 -107273892 - MIR3 SINE MIR -74 134 53 1647 174 0 0 chr9 34997552 34997816 -107273628 + AluJo SINE Alu 37 300 -12 200 329 7 103 chr9 34997816 34997863 -107273581 - MIR3 SINE MIR -155 53 3 279 245 61 71 chr9 34998094 34998290 -107273154 + L2 LINE L2 2126 2319 -995 413 283 158 11 chr9 34998708 34998892 -107272552 - L2 LINE L2 0 3313 3103 * 1161 269 55 36 chr9 34998864 34999333 -107272111 - L2 LINE L2 -2235 1079 602 214 273 76 0 chr9 34999359 34999425 -107272019 + MIR3 SINE MIR 111 181 -27 292 42 0 42 chr9 35000265 35000313 -107271131 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 2159 124 3 10 chr9 35000319 35000633 -107270811 - AluSq SINE Alu -1 312 1 1187 195 0 14 chr9 35000704 35000925 -107270519 + AluJb SINE Alu 82 299 -13 215 191 16 0 chr9 35001494 35001557 -107269887 + (TA)n Simple_repeat Simple_repeat 2 65 0 2517 60 0 0 chr9 35002001 35002299 -107269145 + AluY SINE Alu 1 298 -13 212 0 0 35 chr9 35002302 35002331 -107269113 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2298 106 0 10 chr9 35002762 35003074 -107268370 - AluSx SINE Alu -3 309 1 869 200 108 44 chr9 35003133 35003383 -107268061 - L1ME3A LINE L1 0 6170 5905 335 132 19 0 chr9 35003457 35003510 -107267934 + MER92B LTR ERV1 1 54 -582 4931 114 7 8 chr9 35003803 35004525 -107266919 - HERVL-B3 LTR ERVL -4933 721 1 1195 192 46 29 chr9 35004525 35004899 -107266545 - MLT2B3 LTR ERVL 0 554 175 497 251 217 0 chr9 35005470 35005645 -107265799 + MIR SINE MIR 47 259 -3 191 283 0 0 chr9 35005820 35005866 -107265578 + MIR SINE MIR 206 251 -11 2190 125 0 0 chr9 35006531 35006826 -107264618 + AluSq SINE Alu 1 295 -18 286 291 13 73 chr9 35006848 35006999 -107264445 - L1MC5 LINE L1 -95 7866 7725 244 215 354 0 chr9 35007039 35007118 -107264326 + MER91C DNA MER1_type 34 140 0 1266 164 4 61 chr9 35007138 35007369 -107264075 - MER58A DNA MER1_type -1 223 6 260 211 13 40 chr9 35007849 35007925 -107263519 + GA-rich Low_complexity Low_complexity 3 76 0 501 163 0 0 chr9 35008349 35008435 -107263009 + L1M2 LINE L1 5413 5498 -799 287 303 62 91 chr9 35008451 35008659 -107262785 + L2 LINE L2 3027 3228 -44 395 324 58 43 chr9 35009380 35009587 -107261857 - MIR SINE MIR -51 211 2 401 250 71 0 chr9 35011606 35011746 -107259698 + MER117 DNA MER1_type 1 150 -47 499 350 153 14 chr9 35011773 35012139 -107259305 + L3 LINE CR1 813 1229 -348 730 155 16 16 chr9 35012608 35012737 -107258707 + L1MB4 LINE L1 6052 6180 0 709 207 7 22 chr9 35012746 35012881 -107258563 + FLAM_C SINE Alu 1 133 0 493 339 14 32 chr9 35012892 35013110 -107258334 + MIR SINE MIR 1 214 -48 303 276 31 0 chr9 35013143 35013241 -107258203 + L3 LINE CR1 1316 1416 -161 215 302 62 120 chr9 35013901 35014062 -107257382 + L2 LINE L2 3041 3185 -87 720 173 47 0 chr9 35014062 35014189 -107257255 - FLAM_C SINE Alu 0 133 1 215 302 62 120 chr9 35014189 35014269 -107257175 + L2 LINE L2 3185 3268 -4 308 346 118 7 chr9 35014395 35014548 -107256896 - MIR SINE MIR -73 189 20 816 127 42 0 chr9 35014872 35014990 -107256454 + FLAM_C SINE Alu 1 123 -10 23 0 0 0 chr9 35014990 35015013 -107256431 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr9 35015409 35015433 -107256011 + AT_rich Low_complexity Low_complexity 1 24 0 934 137 8 0 chr9 35015442 35015573 -107255871 - FLAM_C SINE Alu -1 132 1 240 35 0 0 chr9 35015835 35015864 -107255580 + (CA)n Simple_repeat Simple_repeat 2 30 0 558 259 78 35 chr9 35016714 35016946 -107254498 + MIR SINE MIR 19 260 -2 739 275 17 30 chr9 35017474 35017707 -107253737 - MIR SINE MIR -31 231 2 661 202 228 54 chr9 35017797 35018342 -107253102 + LTR50 LTR ERVL 6 784 -11 338 195 29 12 chr9 35018360 35018444 -107253000 - MIR3 SINE MIR -45 163 73 362 347 42 6 chr9 35018549 35018716 -107252728 - MIR SINE MIR -87 175 3 230 245 23 0 chr9 35019685 35019799 -107251645 - L2 LINE L2 -5 3308 3214 288 283 106 18 chr9 35019921 35020034 -107251410 + MIR SINE MIR 19 141 -67 2443 90 3 0 chr9 35020189 35020501 -107250943 + AluSp SINE Alu 1 313 0 435 312 133 14 chr9 35020661 35020940 -107250504 - L3 LINE CR1 -3 1574 1263 236 153 306 47 chr9 35021615 35021700 -107249744 - MIR SINE MIR 0 262 156 379 241 65 37 chr9 35021929 35022037 -107249407 - MIR SINE MIR -59 149 39 279 270 101 0 chr9 35022381 35022470 -107248974 + MER113 DNA MER1_type? 3 100 -421 2131 116 0 7 chr9 35022478 35022779 -107248665 - AluSq SINE Alu -14 299 1 252 272 65 22 chr9 35022944 35023036 -107248408 - L3 LINE CR1 -58 1519 1424 243 61 0 0 chr9 35023128 35023161 -107248283 + (T)n Simple_repeat Simple_repeat 1 33 0 506 271 117 14 chr9 35023177 35023389 -107248055 + MIR SINE MIR 19 251 -11 2185 103 0 3 chr9 35023809 35024095 -107247349 + AluSx SINE Alu 1 286 -22 423 0 0 0 chr9 35024095 35024142 -107247302 + (CATA)n Simple_repeat Simple_repeat 2 48 0 225 0 0 0 chr9 35024898 35024923 -107246521 + (A)n Simple_repeat Simple_repeat 1 25 0 2017 140 7 0 chr9 35025289 35025581 -107245863 - AluJo SINE Alu -14 298 5 679 191 70 0 chr9 35025617 35025732 -107245712 - FLAM_C SINE Alu -18 125 3 2851 130 23 2 chr9 35025910 35026341 -107245103 + MER44D DNA MER2_type 3 497 -108 479 170 138 0 chr9 35026448 35026542 -107244902 + MER44D DNA MER2_type 499 605 0 411 299 39 16 chr9 35027250 35027377 -107244067 + MIR SINE MIR 84 213 -49 435 199 26 0 chr9 35027383 35027488 -107243956 + MIR3 SINE MIR 69 177 -31 400 309 49 10 chr9 35028613 35028796 -107242648 - MIR SINE MIR -65 143 3 389 273 25 0 chr9 35028877 35028998 -107242446 - L3 LINE CR1 -252 1325 1202 24 32 0 0 chr9 35029182 35029213 -107242231 + AT_rich Low_complexity Low_complexity 1 31 0 248 222 333 19 chr9 35030842 35030950 -107240494 - L2 LINE L2 -8 3264 3123 189 270 16 16 chr9 35031595 35031658 -107239786 - L3b LINE CR1 -214 1369 1307 260 264 0 0 chr9 35032541 35032594 -107238850 + (TG)n Simple_repeat Simple_repeat 1 53 0 329 248 108 25 chr9 35032685 35032842 -107238602 + L1ME4a LINE L1 5935 6104 -17 499 245 123 0 chr9 35034727 35034882 -107236562 - MER117 DNA MER1_type -22 175 2 417 177 0 0 chr9 35036254 35036333 -107235111 + (TA)n Simple_repeat Simple_repeat 2 80 0 293 200 0 0 chr9 35036338 35036398 -107235046 - L1MC4 LINE L1 -1339 6703 6644 1377 198 8 30 chr9 35036410 35036678 -107234766 + AluJo SINE Alu 5 266 -46 420 193 0 72 chr9 35036680 35036763 -107234681 + AluJo/FRAM SINE Alu 208 284 -28 634 248 149 72 chr9 35036785 35037414 -107234030 - Charlie7 DNA MER1_type -3 2609 1932 1445 153 27 8 chr9 35037415 35037857 -107233587 + L1PA16 LINE L1 4598 5030 -1136 1471 209 7 16 chr9 35037857 35038164 -107233280 + AluJo SINE Alu 6 309 -3 1445 153 27 8 chr9 35038164 35039078 -107232366 + L1PA16 LINE L1 5030 6158 -8 228 35 0 0 chr9 35039078 35039107 -107232337 + (CATA)n Simple_repeat Simple_repeat 2 30 0 1966 197 154 33 chr9 35039136 35039458 -107231986 - Charlie7 DNA MER1_type -653 1959 1677 6825 91 17 8 chr9 35039458 35041187 -107230257 - L1PA15 LINE L1 -6 6159 4405 1966 197 154 33 chr9 35041187 35041528 -107229916 - Charlie7 DNA MER1_type -935 1677 1216 2614 61 0 0 chr9 35041582 35041893 -107229551 + AluY SINE Alu 1 311 0 265 111 32 79 chr9 35042439 35042502 -107228942 - MER52-int LTR ERV1 -887 6204 6145 246 304 80 0 chr9 35044427 35044552 -107226892 + L1ME4a LINE L1 5691 5825 -296 200 333 24 0 chr9 35045230 35045398 -107226046 + (CATATA)n Simple_repeat Simple_repeat 3 174 0 2264 113 3 0 chr9 35045464 35045775 -107225669 + AluSx SINE Alu 1 312 0 203 156 0 0 chr9 35046018 35046050 -107225394 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 4987 161 35 15 chr9 35046173 35046983 -107224461 + LTR1B LTR ERV1 1 826 0 328 248 40 10 chr9 35047046 35047147 -107224297 + L1ME4a LINE L1 6018 6121 0 2223 174 18 8 chr9 35047732 35048118 -107223326 - MLT1B LTR MaLR 0 390 1 209 344 0 16 chr9 35049236 35049300 -107222144 - L2 LINE L2 -13 3300 3238 1914 183 14 6 chr9 35050045 35050394 -107221050 + Tigger6b DNA MER2_type 1 352 -731 1547 152 4 4 chr9 35050386 35050649 -107220795 + Tigger6b DNA MER2_type 377 639 -958 * 4255 151 172 22 chr9 35050649 35051554 -107219890 - pTR5 LTR ERV1 -11 2427 175 1247 214 48 7 chr9 35051554 35051843 -107219601 + Tigger6b DNA MER2_type 626 926 -671 903 188 17 0 chr9 35051842 35052018 -107219426 + Tigger6b DNA MER2_type 1076 1254 -343 * 933 175 52 47 chr9 35052019 35052230 -107219214 + L1MB8 LINE L1 5822 6033 -145 766 266 44 50 chr9 35052579 35052940 -107218504 + L1M4 LINE L1 3223 3581 -2565 1707 158 7 4 chr9 35053059 35053331 -107218113 + AluJo SINE Alu 1 273 -39 22 0 0 0 chr9 35053382 35053404 -107218040 + AT_rich Low_complexity Low_complexity 1 22 0 3259 32 3 0 chr9 35053871 35054290 -107217154 + L1PA3 LINE L1 5756 6175 0 892 159 0 0 chr9 35054935 35055067 -107216377 + AluSq/x SINE Alu 1 132 -180 2216 107 0 3 chr9 35055069 35055358 -107216086 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr9 35055362 35055384 -107216060 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 371 127 0 0 chr9 35055405 35055460 -107215984 + Alu SINE Alu 245 299 -3 264 130 0 0 chr9 35055517 35055563 -107215881 + (CA)n Simple_repeat Simple_repeat 2 47 0 346 332 84 16 chr9 35056124 35056314 -107215130 + L2 LINE L2 2544 2746 -568 333 325 53 35 chr9 35056329 35056498 -107214946 + MER5A DNA MER1_type 15 186 -3 839 155 36 27 chr9 35056953 35057094 -107214350 - MLT2B1 LTR ERVL -56 456 318 675 99 0 0 chr9 35057094 35057195 -107214249 + (CA)n Simple_repeat Simple_repeat 2 102 0 839 155 36 27 chr9 35057195 35057223 -107214221 - MLT2B1 LTR ERVL -194 318 172 1579 277 55 57 chr9 35057363 35057488 -107213956 + L2 LINE L2 2207 2331 -983 1803 179 0 13 chr9 35057488 35057795 -107213649 - AluJb SINE Alu -9 303 1 1579 277 55 57 chr9 35057795 35058437 -107213007 + L2 LINE L2 2331 2972 -342 299 246 0 0 chr9 35058449 35058518 -107212926 - L2 LINE L2 -929 2385 2317 929 136 7 26 chr9 35058523 35058677 -107212767 + AluJb SINE Alu 1 151 -161 510 272 211 4 chr9 35058680 35058945 -107212499 + L2 LINE L2 2994 3313 0 547 243 168 9 chr9 35061084 35061298 -107210146 - MIR SINE MIR -14 248 1 353 144 58 23 chr9 35061791 35061964 -107209480 + (CA)n Simple_repeat Simple_repeat 1 179 0 189 0 0 0 chr9 35062162 35062183 -107209261 + (A)n Simple_repeat Simple_repeat 1 21 0 1397 143 63 0 chr9 35062637 35062875 -107208569 + L1MD3 LINE L1 7730 7982 -13 1239 177 116 14 chr9 35062980 35063257 -107208187 + MER61A LTR ERV1 1 305 -38 1810 122 0 19 chr9 35063360 35063533 -107207911 - AluSx SINE Alu -7 305 137 2202 98 3 32 chr9 35063533 35063848 -107207596 - AluSx SINE Alu -6 306 1 1810 122 0 19 chr9 35063848 35063936 -107207508 - AluSx SINE Alu -175 137 49 2758 131 21 59 chr9 35063936 35064199 -107207245 + MER6A DNA MER2_type 113 384 -481 2455 84 3 0 chr9 35064199 35064508 -107206936 - AluSg SINE Alu 0 310 1 2758 131 21 59 chr9 35064508 35064680 -107206764 + MER6A DNA MER2_type 384 529 -336 4509 141 0 6 chr9 35064680 35065359 -107206085 + L1PA16 LINE L1 5488 6162 -4 2758 131 21 59 chr9 35065359 35065434 -107206010 + MER6A DNA MER2_type 529 605 0 1743 139 18 0 chr9 35065505 35065779 -107205665 + L1MB2 LINE L1 5703 5981 -202 3781 162 51 23 chr9 35065780 35066525 -107204919 - LTR1B LTR ERV1 0 785 1 1071 126 55 11 chr9 35066525 35066707 -107204737 + L1MB2 LINE L1 5979 6168 -3 280 227 52 65 chr9 35066829 35066898 -107204546 - L1ME4a LINE L1 -4 6117 6049 2361 115 0 0 chr9 35066898 35067210 -107204234 + AluSx SINE Alu 1 312 0 280 227 52 65 chr9 35067210 35067294 -107204150 - L1ME4a LINE L1 -72 6049 5966 2176 111 7 3 chr9 35067389 35067711 -107203733 + AluSq SINE Alu 1 313 0 218 347 0 32 chr9 35067715 35067810 -107203634 - MIR3 SINE MIR -7 201 110 422 254 25 33 chr9 35067917 35068039 -107203405 + MIR SINE MIR 2 122 -140 1493 226 93 64 chr9 35068249 35068872 -107202572 - MER50 LTR ERV1 -84 650 10 921 142 36 91 chr9 35069993 35070236 -107201208 + L1MD3 LINE L1 6208 6344 0 189 0 0 0 chr9 35070711 35070732 -107200712 + (A)n Simple_repeat Simple_repeat 1 21 0 2202 88 0 39 chr9 35071603 35071738 -107199706 + AluSp SINE Alu 1 140 -173 2749 32 0 0 chr9 35071738 35072049 -107199395 + AluY SINE Alu 1 311 0 2202 88 0 39 chr9 35072049 35072218 -107199226 + AluSp SINE Alu 140 293 -20 893 159 8 0 chr9 35072338 35072470 -107198974 - FLAM_C SINE Alu 0 133 1 336 291 68 35 chr9 35073568 35073936 -107197508 + HAL1b LINE L1 69 448 -900 2093 120 3 3 chr9 35074207 35074499 -107196945 - AluJb SINE Alu -20 292 1 1892 157 20 81 chr9 35074830 35075054 -107196390 - MLT1A2 LTR MaLR -3 371 179 2141 90 4 4 chr9 35075054 35075360 -107196084 - AluSx SINE Alu 0 311 6 1892 157 20 81 chr9 35075360 35075529 -107195915 - MLT1A2 LTR MaLR -195 179 1 1034 181 0 81 chr9 35076501 35076722 -107194722 + AluJo SINE Alu 85 287 -25 390 321 65 48 chr9 35077227 35077644 -107193800 + L1M4 LINE L1 4067 4490 -1656 670 215 112 22 chr9 35078123 35078346 -107193098 - MLT1J1 LTR MaLR -146 300 58 2005 129 0 0 chr9 35078854 35079133 -107192311 + AluJb SINE Alu 23 301 -11 382 142 46 3 chr9 35079300 35079518 -107191926 + AluJb SINE Alu 1 297 -5 586 221 16 25 chr9 35079840 35079962 -107191482 + FLAM_A SINE Alu 1 121 -12 22 0 0 0 chr9 35079964 35079986 -107191458 + AT_rich Low_complexity Low_complexity 1 22 0 227 306 51 20 chr9 35080628 35080726 -107190718 - MLT1H LTR MaLR -14 535 435 477 297 78 14 chr9 35080811 35081030 -107190414 - MLT1H LTR MaLR -290 259 27 198 71 0 0 chr9 35081565 35081593 -107189851 + (TG)n Simple_repeat Simple_repeat 2 29 0 2431 113 26 37 chr9 35081719 35082098 -107189346 - THE1C LTR MaLR 0 375 1 230 244 35 23 chr9 35082202 35082288 -107189156 + LTR67 LTR ERVL 458 544 -13 333 0 0 0 chr9 35082687 35082724 -107188720 + (CA)n Simple_repeat Simple_repeat 2 38 0 301 258 33 77 chr9 35082766 35082917 -107188527 + L1M4 LINE L1 4532 4675 -1471 2092 109 34 0 chr9 35082917 35083211 -107188233 - AluSg SINE Alu -6 304 1 301 258 33 77 chr9 35083211 35083241 -107188203 + L1M4 LINE L1 4675 4705 -1441 714 163 41 24 chr9 35084000 35084123 -107187321 + FLAM_A SINE Alu 3 127 -6 299 268 92 49 chr9 35084124 35084430 -107187014 + L1M4 LINE L1 4737 5055 -1091 1870 143 84 53 chr9 35084522 35084844 -107186600 + MER1B DNA MER1_type 4 335 -2 482 278 91 78 chr9 35085005 35085314 -107186130 + MLT1J LTR MaLR 3 315 -196 1538 106 0 0 chr9 35085448 35085646 -107185798 - AluSq SINE Alu -8 305 108 924 90 0 0 chr9 35085661 35085772 -107185672 + AluSq/x SINE Alu 12 122 -190 540 199 106 0 chr9 35085775 35085926 -107185518 - MER20B DNA MER1_type -30 753 587 195 230 18 124 chr9 35086517 35086630 -107184814 - L2 LINE L2 -592 2722 2622 2101 116 7 3 chr9 35086631 35086915 -107184529 + AluSx SINE Alu 1 285 -27 25 0 0 0 chr9 35086915 35086940 -107184504 + AT_rich Low_complexity Low_complexity 1 25 0 2906 49 0 6 chr9 35087042 35087388 -107184056 + LTR14A LTR ERVK 1 344 0 396 230 0 0 chr9 35087882 35087956 -107183488 - L2 LINE L2 -1 3312 3239 21 0 0 0 chr9 35088031 35088052 -107183392 + AT_rich Low_complexity Low_complexity 1 21 0 1632 186 17 3 chr9 35088114 35088409 -107183035 - AluJo SINE Alu -13 299 1 2977 138 40 0 chr9 35088429 35088900 -107182544 - L1MA8 LINE L1 -5 6286 5797 495 61 0 0 chr9 35088901 35088967 -107182477 - MER2 DNA MER2_type -159 186 121 854 150 0 8 chr9 35088968 35089101 -107182343 + AluJb SINE Alu 1 132 -180 834 181 0 8 chr9 35089101 35089234 -107182210 - MER2 DNA MER2_type -213 132 1 1725 138 3 0 chr9 35089237 35089526 -107181918 - L1MA8 LINE L1 -771 5375 5086 1689 159 29 7 chr9 35089527 35089803 -107181641 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr9 35089806 35089826 -107181618 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 660 276 60 91 chr9 35091530 35092277 -107179167 - L1M4 LINE L1 -1711 4435 3712 4146 158 68 28 chr9 35092286 35093069 -107178375 - MER21B LTR ERV1 -7 856 43 525 193 9 18 chr9 35093080 35093194 -107178250 + L2 LINE L2 3198 3310 -3 248 0 31 0 chr9 35093303 35093335 -107178109 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2208 102 7 3 chr9 35093337 35093632 -107177812 - AluSx SINE Alu -16 296 1 432 200 200 26 chr9 35093679 35093794 -107177650 + MER5A DNA MER1_type 26 160 -29 674 284 70 80 chr9 35093942 35094059 -107177385 - L1M4 LINE L1 -2679 3467 3350 1914 148 24 10 chr9 35094059 35094356 -107177088 - AluJo SINE Alu -11 301 1 674 284 70 80 chr9 35094356 35094405 -107177039 - L1M4 LINE L1 -2796 3350 3302 3881 172 46 62 chr9 35094405 35095389 -107176055 + LTR5 LTR ERVK 2 969 0 674 284 70 80 chr9 35095389 35095514 -107175930 - L1M4 LINE L1 -2844 3302 3177 2368 85 10 0 chr9 35095514 35095809 -107175635 - AluSg SINE Alu -12 298 1 674 284 70 80 chr9 35095809 35096199 -107175245 - L1M4 LINE L1 -2969 3177 2791 2536 128 43 31 chr9 35096209 35096252 -107175192 - MSTA LTR MaLR 0 428 387 2205 80 3 65 chr9 35096252 35096577 -107174867 + AluSq SINE Alu 1 305 -8 2536 128 43 31 chr9 35096577 35096956 -107174488 - MSTA LTR MaLR -41 387 1 1689 178 0 53 chr9 35097005 35097326 -107174118 + AluJo SINE Alu 1 304 -8 3462 161 7 2 chr9 35097534 35098086 -107173358 - MER41D LTR ERV1 -2 555 1 24 0 0 0 chr9 35098482 35098506 -107172938 + AT_rich Low_complexity Low_complexity 1 24 0 353 307 129 0 chr9 35099381 35099544 -107171900 - MIR SINE MIR -1 261 78 10262 124 15 22 chr9 35101888 35103515 -107167929 + L1PA6 LINE L1 11 1625 -4521 16554 51 7 0 chr9 35103616 35106435 -107165009 + L1PA6 LINE L1 3316 6144 -10 347 185 25 0 chr9 35106437 35106518 -107164926 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 235 174 0 0 chr9 35106518 35106564 -107164880 - LTR66 LTR ERVL -171 439 394 1199 144 0 0 chr9 35106564 35106737 -107164707 + AluSq SINE Alu 127 299 -14 731 199 53 66 chr9 35106889 35107172 -107164272 + L1M4 LINE L1 4890 5166 -980 845 158 0 0 chr9 35107355 35107482 -107163962 + FRAM SINE Alu 44 170 -6 28 61 0 0 chr9 35107667 35107716 -107163728 + AT_rich Low_complexity Low_complexity 1 49 0 1862 140 13 36 chr9 35107716 35108023 -107163421 - AluJb SINE Alu -12 300 1 864 135 15 15 chr9 35108250 35108383 -107163061 + FLAM_C SINE Alu 1 133 0 340 268 73 0 chr9 35108873 35108996 -107162448 + L1M4 LINE L1 3794 3925 -2221 21 36 0 0 chr9 35109257 35109285 -107162159 + AT_rich Low_complexity Low_complexity 1 28 0 483 18 0 0 chr9 35109786 35109842 -107161602 + (CA)n Simple_repeat Simple_repeat 2 57 0 2070 117 0 36 chr9 35110489 35110798 -107160646 - AluSx SINE Alu -14 298 1 21 36 0 0 chr9 35111315 35111343 -107160101 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr9 35112331 35112358 -107159086 + AT_rich Low_complexity Low_complexity 1 27 0 1232 114 0 0 chr9 35112358 35112516 -107158928 + AluSq SINE Alu 1 158 -155 249 318 69 23 chr9 35113378 35113551 -107157893 - MER5A DNA MER1_type -2 187 7 708 220 140 9 chr9 35113654 35113868 -107157576 - MIR SINE MIR -12 250 9 2570 64 0 13 chr9 35113874 35114185 -107157259 - AluY SINE Alu -2 309 3 298 279 29 44 chr9 35114684 35114820 -107156624 + MIR SINE MIR 128 261 -1 636 323 64 41 chr9 35117200 35117796 -107153648 - L2 LINE L2 0 3313 2702 2130 125 13 3 chr9 35117900 35118205 -107153239 + AluSx SINE Alu 3 310 -2 2108 72 4 4 chr9 35118592 35118869 -107152575 + L1PA6 LINE L1 5878 6154 0 1374 192 17 23 chr9 35119685 35119987 -107151457 + AluJo SINE Alu 3 302 0 2220 132 0 0 chr9 35120029 35120332 -107151112 + AluSx SINE Alu 3 305 -7 2935 145 63 10 chr9 35120514 35121018 -107150426 - MER39 LTR ERV1 -86 621 91 207 333 75 0 chr9 35121037 35121157 -107150287 + MIR SINE MIR 110 238 -24 3225 106 0 19 chr9 35121516 35121986 -107149458 - L1PA15 LINE L1 -12 6153 5693 589 302 217 22 chr9 35123028 35123346 -107148098 - L2 LINE L2 -597 2717 2338 5307 199 71 45 chr9 35123353 35123894 -107147550 + L1MC4a LINE L1 6104 6630 -1178 183 80 0 0 chr9 35123894 35123919 -107147525 + (TG)n Simple_repeat Simple_repeat 1 25 0 5307 199 71 45 chr9 35123919 35124887 -107146557 + L1MC4a LINE L1 6630 7652 -156 26 0 0 0 chr9 35125334 35125360 -107146084 + AT_rich Low_complexity Low_complexity 1 26 0 1340 151 46 5 chr9 35125412 35125630 -107145814 - AluJo SINE Alu -1 311 85 1253 220 48 36 chr9 35125638 35126012 -107145432 + L1ME2 LINE L1 5795 6164 0 1933 119 27 70 chr9 35126135 35126506 -107144938 + L1MB3 LINE L1 5822 6176 -7 452 303 108 13 chr9 35127361 35127592 -107143852 - MIR SINE MIR -6 256 4 2426 69 0 3 chr9 35127805 35128093 -107143351 - AluSp SINE Alu -5 308 22 276 53 0 0 chr9 35128511 35128549 -107142895 + (A)n Simple_repeat Simple_repeat 1 38 0 1888 107 68 11 chr9 35128695 35128975 -107142469 - AluSx SINE Alu -16 296 1 2266 100 7 0 chr9 35128980 35129279 -107142165 - AluSp SINE Alu -12 301 1 2208 115 0 16 chr9 35129280 35129592 -107141852 - AluSx SINE Alu -5 307 1 1569 112 0 30 chr9 35130959 35131192 -107140252 + AluJb SINE Alu 85 310 -2 429 274 78 17 chr9 35132457 35132636 -107138808 + MIR SINE MIR 68 257 -5 2186 109 0 0 chr9 35132639 35132951 -107138493 - AluSx SINE Alu 0 312 1 309 343 0 19 chr9 35132965 35133070 -107138374 - L2 LINE L2 -33 3239 3137 266 240 41 107 chr9 35133341 35133399 -107138045 - MER91B DNA MER1_type -60 130 83 2322 105 3 0 chr9 35133399 35133704 -107137740 - AluSp SINE Alu -7 306 1 266 240 41 107 chr9 35133704 35133766 -107137678 - MER91B DNA MER1_type -107 83 18 1999 135 17 0 chr9 35133982 35134271 -107137173 + AluSg SINE Alu 3 296 -14 208 269 52 37 chr9 35134438 35134572 -107136872 - L2 LINE L2 -1022 2292 2157 257 405 33 8 chr9 35135892 35136013 -107135431 + L2 LINE L2 3145 3268 -4 2372 94 7 0 chr9 35136198 35136497 -107134947 - AluSx SINE Alu -11 301 1 722 205 146 6 chr9 35136618 35136789 -107134655 + MER3 DNA MER1_type 2 196 -13 1490 138 17 0 chr9 35136976 35137207 -107134237 + Tigger1 DNA MER2_type 3 237 -2181 6673 120 207 10 chr9 35137212 35138084 -107133360 + Tigger1 DNA MER2_type 997 1696 -722 2591 53 0 3 chr9 35138084 35138387 -107133057 + AluY SINE Alu 1 302 -9 6673 120 207 10 chr9 35138387 35138702 -107132742 + Tigger1 DNA MER2_type 1696 2418 0 1652 155 34 10 chr9 35138757 35139048 -107132396 - AluJo SINE Alu -14 298 1 432 279 234 5 chr9 35139373 35139574 -107131870 - MIR SINE MIR -11 251 5 761 183 16 0 chr9 35139700 35139826 -107131618 + FLAM_A SINE Alu 1 128 -5 209 326 188 0 chr9 35140410 35140554 -107130890 - L2 LINE L2 -635 2679 2509 390 335 67 8 chr9 35140554 35140793 -107130651 - L2 LINE L2 -911 2403 2151 294 239 11 68 chr9 35140799 35140887 -107130557 + L1ME3A LINE L1 6027 6109 -61 3839 45 8 6 chr9 35140888 35141358 -107130086 + L1PA7 LINE L1 5682 6152 -2 256 254 0 0 chr9 35141505 35141564 -107129880 + L2 LINE L2 3191 3249 -64 260 336 105 32 chr9 35141613 35141860 -107129584 - L2 LINE L2 -1317 1997 1733 2318 45 69 3 chr9 35142172 35142460 -107128984 + AluY SINE Alu 1 307 -4 760 293 60 0 chr9 35142508 35142740 -107128704 + MIR SINE MIR 1 246 -16 2220 87 7 3 chr9 35142823 35143111 -107128333 + AluSx SINE Alu 1 289 -23 2424 47 10 13 chr9 35143211 35143512 -107127932 - AluSp SINE Alu -13 300 1 2837 129 29 21 chr9 35144662 35145143 -107126301 + MER31A LTR ERV1 1 485 0 4249 158 61 54 chr9 35145727 35145764 -107125680 - L1MB3 LINE L1 -118 6065 6030 1538 111 202 8 chr9 35145764 35146007 -107125437 + AluSg SINE Alu 1 290 -20 4249 158 61 54 chr9 35146007 35146353 -107125091 - L1MB3 LINE L1 -153 6030 5688 2988 123 7 7 chr9 35146353 35146791 -107124653 + L1PB3 LINE L1 5708 6147 -7 4249 158 61 54 chr9 35146791 35146996 -107124448 - L1MB3 LINE L1 -495 5688 5486 2311 87 0 29 chr9 35146996 35147305 -107124139 - AluSg SINE Alu -10 300 1 4249 158 61 54 chr9 35147305 35147790 -107123654 - L1MB3 LINE L1 -697 5486 4987 2024 148 10 6 chr9 35147790 35148101 -107123343 - AluJo SINE Alu 0 312 1 4249 158 61 54 chr9 35148101 35148421 -107123023 - L1MB3 LINE L1 -1196 4987 4671 234 0 0 0 chr9 35148433 35148459 -107122985 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 736 171 7 29 chr9 35148508 35148648 -107122796 + FLAM_C SINE Alu 2 138 -5 446 177 242 81 chr9 35148655 35148841 -107122603 + MER102b DNA MER1_type 126 341 0 267 33 0 0 chr9 35149013 35149043 -107122401 - MLT2C2 LTR ERVL 0 464 435 2605 68 0 0 chr9 35149086 35149395 -107122049 + AluY SINE Alu 1 309 -2 366 325 69 63 chr9 35149405 35149863 -107121581 - L2 LINE L2 -261 3052 2578 947 248 32 8 chr9 35150159 35150405 -107121039 + LTR16C LTR ERVL 236 487 -4 33 25 0 0 chr9 35150577 35150617 -107120827 + AT_rich Low_complexity Low_complexity 1 40 0 814 153 0 23 chr9 35150776 35150907 -107120537 - FLAM_C SINE Alu -4 129 2 2399 82 0 0 chr9 35150919 35151212 -107120232 - AluSx SINE Alu -12 300 8 262 250 125 91 chr9 35151819 35151881 -107119563 + L2 LINE L2 2636 2694 -620 1653 189 0 26 chr9 35151881 35152183 -107119261 + AluJo SINE Alu 18 311 -1 262 250 125 91 chr9 35152183 35152384 -107119060 + L2 LINE L2 2694 2908 -406 636 225 156 36 chr9 35152713 35152806 -107118638 - L2 LINE L2 0 3313 3233 2412 85 3 0 chr9 35152806 35153101 -107118343 + AluSq SINE Alu 2 297 -16 636 225 156 36 chr9 35153101 35153227 -107118217 - L2 LINE L2 -80 3233 3124 2227 123 0 3 chr9 35153227 35153529 -107117915 + AluSx SINE Alu 1 301 -11 636 225 156 36 chr9 35153529 35153615 -107117829 - L2 LINE L2 -189 3124 2970 274 293 24 49 chr9 35153605 35153656 -107117788 - L2 LINE L2 -546 2768 2717 * 2447 68 3 0 chr9 35153656 35153952 -107117492 - AluSg SINE Alu -13 297 1 274 293 24 49 chr9 35153952 35154023 -107117421 - L2 LINE L2 -597 2717 2649 337 282 94 0 chr9 35154045 35154162 -107117282 - L2 LINE L2 0 3272 3145 731 275 187 29 chr9 35154712 35155192 -107116252 + MLT1G1 LTR MaLR 1 595 0 363 323 30 8 chr9 35155320 35155453 -107115991 + L2 LINE L2 3134 3269 -3 733 238 168 5 chr9 35155517 35155731 -107115713 - MIR SINE MIR -2 260 12 2369 71 10 3 chr9 35155892 35156187 -107115257 + AluY SINE Alu 1 297 -14 343 212 15 0 chr9 35157006 35157072 -107114372 - L2 LINE L2 -3 3269 3203 2394 91 3 0 chr9 35157727 35158025 -107113419 - AluSg SINE Alu -11 299 1 187 300 17 0 chr9 35158459 35158519 -107112925 - L3 LINE CR1 -11 1566 1506 273 305 12 0 chr9 35159199 35159281 -107112163 + L2 LINE L2 3150 3232 -40 369 221 42 11 chr9 35159289 35159384 -107112060 - L2 LINE L2 -4 3309 3212 1140 220 90 43 chr9 35159408 35159646 -107111798 - MER21B LTR ERV1 -54 809 583 1660 179 123 0 chr9 35159646 35159971 -107111473 - MLT1A1 LTR MaLR 0 365 1 1140 220 90 43 chr9 35159971 35160300 -107111144 - MER21B LTR ERV1 -280 583 148 361 235 15 0 chr9 35160401 35160469 -107110975 - MER21B LTR ERV1 -773 90 22 2079 111 9 25 chr9 35160470 35160785 -107110659 - AluSx SINE Alu -2 310 1 1426 87 11 0 chr9 35161347 35161532 -107109912 + AluSq SINE Alu 117 303 -10 2064 115 3 3 chr9 35161544 35161831 -107109613 + AluSg SINE Alu 3 289 -21 1834 162 44 3 chr9 35161836 35162176 -107109268 + L1MC3 LINE L1 7432 7785 0 23 0 0 0 chr9 35162280 35162303 -107109141 + AT_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr9 35162315 35162374 -107109070 + AT_rich Low_complexity Low_complexity 1 59 0 202 271 49 41 chr9 35163171 35163293 -107108151 + L2 LINE L2 2360 2482 -832 215 258 0 16 chr9 35163497 35163559 -107107885 + MIR SINE MIR 168 228 -34 2371 76 7 3 chr9 35163792 35164093 -107107351 + AluSp SINE Alu 1 302 -11 368 213 12 88 chr9 35164173 35164333 -107107111 + L1MC/D LINE L1 4465 4612 -1534 801 161 23 0 chr9 35164485 35164615 -107106829 + FLAM_C SINE Alu 1 133 -10 714 189 15 15 chr9 35164790 35164922 -107106522 + FLAM_A SINE Alu 2 133 0 510 266 225 15 chr9 35165202 35165597 -107105847 + L1MC/D LINE L1 5313 5790 -2018 1667 163 46 0 chr9 35165784 35166067 -107105377 - AluJb SINE Alu -10 302 7 210 302 7 86 chr9 35166106 35166166 -107105278 + L2 LINE L2 3136 3199 -73 2039 110 7 20 chr9 35166166 35166467 -107104977 - AluSx SINE Alu -15 297 1 210 302 7 86 chr9 35166467 35166545 -107104899 + L2 LINE L2 3199 3263 -9 209 339 43 26 chr9 35166912 35167027 -107104417 + L2 LINE L2 2967 3083 -189 677 192 15 0 chr9 35167126 35167256 -107104188 - AluSq/x SINE Alu -180 133 2 275 100 0 25 chr9 35169661 35169701 -107101743 + U2 snRNA snRNA 1 39 -149 2249 101 3 22 chr9 35170084 35170402 -107101042 - AluSp SINE Alu -1 312 1 2014 99 17 10 chr9 35170517 35170811 -107100633 + AluSq SINE Alu 1 296 -17 1332 99 0 11 chr9 35170813 35170995 -107100449 + AluSg/x SINE Alu 126 305 -5 731 213 109 11 chr9 35172056 35172230 -107099214 - MER3 DNA MER1_type -17 192 2 216 0 0 0 chr9 35172945 35172969 -107098475 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2222 89 3 10 chr9 35174166 35174459 -107096985 - AluSq SINE Alu -22 291 1 2035 141 13 10 chr9 35174489 35174793 -107096651 - AluSx SINE Alu -7 305 1 720 181 101 70 chr9 35175445 35175644 -107095800 + MER6B DNA MER2_type 2 206 -4 454 264 89 35 chr9 35175774 35176032 -107095412 + L1MC5 LINE L1 7642 7913 -48 1501 149 69 29 chr9 35176484 35176759 -107094685 + AluJb SINE Alu 4 289 -23 25 31 0 0 chr9 35176767 35176799 -107094645 + AT_rich Low_complexity Low_complexity 1 32 0 310 315 24 39 chr9 35176994 35177121 -107094323 - MIR SINE MIR -131 131 7 349 130 19 0 chr9 35177933 35177987 -107093457 + FRAM/FAM SINE Alu 14 68 -107 565 168 99 0 chr9 35177987 35178088 -107093356 + AluJo/FRAM SINE Alu 156 266 -46 22 0 0 0 chr9 35178100 35178122 -107093322 + AT_rich Low_complexity Low_complexity 1 22 0 1518 126 146 0 chr9 35178188 35178434 -107093010 + AluSq SINE Alu 11 292 -21 2221 114 3 0 chr9 35178524 35178831 -107092613 - AluSq SINE Alu -5 308 1 1911 123 4 4 chr9 35179045 35179306 -107092138 - AluSx SINE Alu -51 261 1 890 125 0 28 chr9 35180251 35180395 -107091049 + FLAM_C SINE Alu 1 140 -3 1997 156 0 0 chr9 35180474 35180763 -107090681 + AluJb SINE Alu 13 301 -11 1946 122 36 33 chr9 35181061 35181365 -107090079 - AluSx SINE Alu -7 305 1 204 40 0 0 chr9 35182599 35182624 -107088820 + (TA)n Simple_repeat Simple_repeat 2 26 0 1958 120 23 32 chr9 35183462 35183771 -107087673 + AluSx SINE Alu 1 306 -6 1762 178 159 70 chr9 35183833 35184034 -107087410 + L1MB4 LINE L1 5406 5588 -592 1268 182 134 19 chr9 35184034 35184341 -107087103 - MER2 DNA MER2_type -1 343 2 1762 178 159 70 chr9 35184341 35184368 -107087076 + L1MB4 LINE L1 5588 5611 -569 2272 108 7 0 chr9 35184368 35184673 -107086771 + AluSq SINE Alu 1 307 -6 1762 178 159 70 chr9 35184673 35185155 -107086289 + L1MB4 LINE L1 5611 6180 0 530 29 116 0 chr9 35185189 35185258 -107086186 + MADE1 DNA Mariner 4 80 0 559 160 208 7 chr9 35185646 35185790 -107085654 - MER5B DNA MER1_type -3 175 3 2261 100 3 0 chr9 35185896 35186195 -107085249 - AluSg SINE Alu -10 300 1 332 150 33 0 chr9 35186491 35186551 -107084893 - MER5A DNA MER1_type -60 129 68 189 0 0 0 chr9 35187055 35187076 -107084368 + (A)n Simple_repeat Simple_repeat 1 21 0 2271 111 0 0 chr9 35188625 35188923 -107082521 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 35189646 35189667 -107081777 + (A)n Simple_repeat Simple_repeat 1 21 0 2326 87 3 10 chr9 35189671 35189970 -107081474 + AluSx SINE Alu 1 297 -15 2103 112 0 14 chr9 35190638 35190948 -107080496 + AluSx SINE Alu 1 306 0 345 173 68 0 chr9 35190950 35191019 -107080425 + MLT1J2 LTR MaLR 366 440 -6 668 172 0 63 chr9 35191759 35191911 -107079533 + L1MD2 LINE L1 5855 5998 -173 4670 178 62 15 chr9 35191916 35192714 -107078730 + L1MC1 LINE L1 4362 5121 -1212 1765 171 55 0 chr9 35192714 35192830 -107078614 + AluJo SINE Alu 1 109 -203 216 0 0 0 chr9 35192830 35192854 -107078590 + (CA)n Simple_repeat Simple_repeat 1 24 0 1765 171 55 0 chr9 35192854 35193030 -107078414 + AluJo SINE Alu 109 309 -3 4670 178 62 15 chr9 35193030 35193590 -107077854 + L1MC1 LINE L1 5121 5653 -680 21 0 0 0 chr9 35193590 35193611 -107077833 + AT_rich Low_complexity Low_complexity 1 21 0 2191 103 0 0 chr9 35193611 35193902 -107077542 + AluSg SINE Alu 1 291 -19 2872 13 0 0 chr9 35193905 35194213 -107077231 + AluY SINE Alu 1 308 -3 4670 178 62 15 chr9 35194213 35194558 -107076886 + L1MC1 LINE L1 5654 6173 -160 2742 163 38 10 chr9 35194214 35194717 -107076727 + L1MC1 LINE L1 5817 6333 0 1129 206 57 114 chr9 35194722 35194838 -107076606 + L1MD2 LINE L1 5945 6066 -293 1877 65 146 0 chr9 35194838 35195099 -107076345 + AluSp SINE Alu 1 299 -4 1129 206 57 114 chr9 35195099 35195420 -107076024 + L1MD2 LINE L1 6066 6357 -2 1212 207 79 30 chr9 35196522 35196851 -107074593 + MER2 DNA MER2_type 1 345 0 829 165 0 0 chr9 35197068 35197195 -107074249 + FLAM_C SINE Alu 1 127 -16 613 191 14 71 chr9 35197240 35197381 -107074063 - FLAM_A SINE Alu 0 133 1 318 282 73 9 chr9 35197399 35197509 -107073935 - MER5B DNA MER1_type -61 117 1 192 125 0 0 chr9 35198219 35198251 -107073193 + (TA)n Simple_repeat Simple_repeat 2 33 0 910 189 0 0 chr9 35198259 35198407 -107073037 - FRAM SINE Alu -29 147 1 258 286 134 0 chr9 35199397 35199516 -107071928 + L1ME4a LINE L1 5857 5991 -130 193 330 57 16 chr9 35200399 35200497 -107070947 + MIR SINE MIR 5 110 -98 21 71 0 0 chr9 35200957 35200999 -107070445 + AT_rich Low_complexity Low_complexity 1 42 0 260 177 71 88 chr9 35201237 35201350 -107070094 - L1ME4a LINE L1 -1 6120 6010 1904 181 0 0 chr9 35201382 35201680 -107069764 - AluSx SINE Alu -12 300 3 340 171 72 155 chr9 35201960 35202153 -107069291 + L1MC4a LINE L1 5257 5433 -2375 267 211 227 13 chr9 35202161 35202313 -107069131 + L1MC4a LINE L1 5725 5813 -308 999 87 0 0 chr9 35202529 35202655 -107068789 + AluSp/q SINE Alu 157 282 -31 1628 95 0 27 chr9 35202755 35202976 -107068468 - AluSq SINE Alu -98 215 1 1229 211 40 46 chr9 35203080 35203383 -107068061 - AluJo SINE Alu -11 301 1 38 0 0 0 chr9 35204631 35204669 -107066775 + AT_rich Low_complexity Low_complexity 1 38 0 191 254 0 70 chr9 35205027 35205098 -107066346 + L2 LINE L2 3207 3272 0 266 242 11 22 chr9 35205504 35205595 -107065849 - L1ME4a LINE L1 -62 6059 5970 762 249 91 56 chr9 35205603 35205977 -107065467 - L1ME4a LINE L1 -178 5943 5557 2274 96 7 3 chr9 35206144 35206436 -107065008 + AluSx SINE Alu 1 293 -19 2111 141 3 32 chr9 35206583 35206930 -107064514 + MER1B DNA MER1_type 1 337 0 272 216 144 46 chr9 35206937 35207090 -107064354 - L1ME4a LINE L1 -2336 5472 5305 765 146 46 15 chr9 35207171 35207301 -107064143 - FRAM SINE Alu -18 158 25 2262 114 0 7 chr9 35207800 35208107 -107063337 - AluSx SINE Alu -7 305 1 360 294 142 14 chr9 35208115 35208333 -107063111 + L2 LINE L2 2151 2396 -918 883 282 76 76 chr9 35208450 35209148 -107062296 + HAL1 LINE L1 26 723 -1784 522 269 117 43 chr9 35209380 35209472 -107061972 + HAL1 LINE L1 1638 1722 -785 390 149 246 79 chr9 35209472 35209586 -107061858 + FLAM_C SINE Alu 1 133 0 2497 71 0 0 chr9 35209590 35209885 -107061559 + AluSc SINE Alu 1 295 -14 522 269 117 43 chr9 35209885 35210044 -107061400 + HAL1 LINE L1 1724 1913 -594 521 278 102 43 chr9 35210086 35210460 -107060984 + HAL1 LINE L1 1989 2384 -123 2374 96 0 0 chr9 35210561 35210863 -107060581 - AluSq SINE Alu -11 302 1 302 241 38 0 chr9 35211171 35211250 -107060194 - MIR SINE MIR -129 133 52 320 323 81 0 chr9 35211250 35211374 -107060070 - MER94 DNA DNA 0 134 1 190 154 51 0 chr9 35211381 35211420 -107060024 - MIR SINE MIR -220 42 2 1709 194 14 0 chr9 35211575 35211869 -107059575 - AluJo SINE Alu -14 298 1 6621 97 43 23 chr9 35212531 35212583 -107058861 + L1MA3 LINE L1 5218 5268 -1037 1945 142 0 3 chr9 35212583 35212897 -107058547 + AluSq SINE Alu 1 313 0 6621 97 43 23 chr9 35212897 35212908 -107058536 + L1MA3 LINE L1 5268 5277 -1028 1842 146 4 0 chr9 35212908 35213176 -107058268 + AluSx SINE Alu 1 269 -43 210 37 0 0 chr9 35213183 35213210 -107058234 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6621 97 43 23 chr9 35213210 35214218 -107057226 + L1MA3 LINE L1 5282 6298 -7 1960 143 3 10 chr9 35215120 35215414 -107056030 + AluSx SINE Alu 5 296 -16 2273 100 10 0 chr9 35215616 35215915 -107055529 + AluSx SINE Alu 3 304 -8 290 303 54 76 chr9 35216009 35216194 -107055250 + MER21B LTR ERV1 17 197 -666 1546 195 3 3 chr9 35216194 35216476 -107054968 + AluJb SINE Alu 16 297 -15 575 186 17 17 chr9 35217249 35217367 -107054077 + FLAM_C SINE Alu 5 122 -21 1528 210 0 35 chr9 35217381 35217695 -107053749 + AluJb SINE Alu 1 303 -9 340 252 244 0 chr9 35217695 35217818 -107053626 - MIR SINE MIR -92 170 18 1800 160 13 13 chr9 35217837 35218137 -107053307 - AluJb SINE Alu -12 300 1 2481 54 0 3 chr9 35218159 35218453 -107052991 + AluY SINE Alu 1 293 -18 2461 52 16 3 chr9 35219931 35220236 -107051208 + AluSp SINE Alu 1 309 -4 1586 97 13 13 chr9 35220348 35220574 -107050870 + AluSq SINE Alu 75 300 -13 318 18 36 36 chr9 35220596 35220652 -107050792 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 2172 92 0 14 chr9 35220675 35220968 -107050476 - AluSg SINE Alu -21 289 1 822 193 0 0 chr9 35221127 35221277 -107050167 - AluJb SINE Alu -23 289 140 1992 103 4 4 chr9 35221435 35221706 -107049738 + AluSx SINE Alu 1 271 -41 203 0 0 36 chr9 35221715 35221743 -107049701 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 785 203 92 57 chr9 35222264 35222454 -107048990 + MER20B DNA MER1_type 488 693 -90 1986 107 4 0 chr9 35222454 35222717 -107048727 - AluSx SINE Alu -14 298 35 785 203 92 57 chr9 35222717 35222807 -107048637 + MER20B DNA MER1_type 693 778 -5 830 196 5 15 chr9 35222839 35223038 -107048406 + HAL1b LINE L1 927 1123 -225 1840 155 23 10 chr9 35223048 35223352 -107048092 + AluJo SINE Alu 1 308 -4 2144 110 0 10 chr9 35223360 35223651 -107047793 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr9 35223651 35223675 -107047769 + AT_rich Low_complexity Low_complexity 1 24 0 326 214 57 0 chr9 35224804 35224874 -107046570 + MIR SINE MIR 174 247 -15 318 50 0 0 chr9 35224878 35224918 -107046526 + (TTG)n Simple_repeat Simple_repeat 3 42 0 753 164 0 0 chr9 35224918 35225034 -107046410 - FLAM_C SINE Alu -26 117 2 2336 58 0 7 chr9 35226488 35226780 -107044664 + L1PA5 LINE L1 5865 6154 0 2009 111 0 0 chr9 35227077 35227338 -107044106 + AluSq SINE Alu 1 261 -52 681 252 70 42 chr9 35227493 35227779 -107043665 + L2 LINE L2 1654 1947 -1367 2490 73 3 0 chr9 35228033 35228333 -107043111 + AluY SINE Alu 1 301 -10 1289 110 6 0 chr9 35228333 35228506 -107042938 + AluSq SINE Alu 134 307 -6 41978 66 7 2 chr9 35228518 35234632 -107036812 + L1PA5 LINE L1 11 6154 0 408 299 130 23 chr9 35234750 35235104 -107036340 + L1MC5 LINE L1 639 1008 -5197 570 241 13 44 chr9 35235106 35235264 -107036180 + Tigger1 DNA MER2_type 1 153 -2265 296 187 0 27 chr9 35235288 35235363 -107036081 + CT-rich Low_complexity Low_complexity 6 78 0 1038 151 0 0 chr9 35235365 35235517 -107035927 - FRAM SINE Alu -18 158 7 1155 152 30 5 chr9 35235522 35235720 -107035724 + Tigger1 DNA MER2_type 2216 2418 0 885 247 55 61 chr9 35235745 35236507 -107034937 + L1MC5 LINE L1 1072 1837 -6193 2373 70 7 10 chr9 35236507 35236805 -107034639 - AluSq SINE Alu -16 297 1 885 247 55 61 chr9 35236805 35236989 -107034455 + L1MC5 LINE L1 1837 7995 -35 234 191 0 48 chr9 35236975 35237038 -107034406 + L1MEd LINE L1 1608 1667 -4729 * 2592 41 0 0 chr9 35237196 35237490 -107033954 + AluY SINE Alu 1 294 -17 369 299 83 22 chr9 35237559 35237873 -107033571 + L1MEd LINE L1 1860 2192 -4204 491 289 69 26 chr9 35237886 35238118 -107033326 + L2 LINE L2 1662 1903 -1411 307 245 61 63 chr9 35238133 35238158 -107033286 + L1MEd LINE L1 2183 2207 -4008 2360 90 3 3 chr9 35238158 35238458 -107032986 + AluSg SINE Alu 1 300 -10 307 245 61 63 chr9 35238458 35238617 -107032827 + L1MEd LINE L1 2207 2332 -3883 362 145 0 14 chr9 35238729 35238798 -107032646 + (TA)n Simple_repeat Simple_repeat 1 68 0 337 187 0 13 chr9 35238822 35238897 -107032547 - L1MB7 LINE L1 -52 6132 6059 2190 118 0 3 chr9 35238924 35239229 -107032215 - AluSx SINE Alu -8 304 1 401 272 4 52 chr9 35239247 35239415 -107032029 + L1MEd LINE L1 2498 2652 -3563 2539 80 0 0 chr9 35239415 35239726 -107031718 + AluY SINE Alu 1 311 0 401 272 4 52 chr9 35239726 35239807 -107031637 + L1MEd LINE L1 2652 2735 -3480 665 176 0 9 chr9 35239823 35239931 -107031513 + MER44D DNA MER2_type 3 379 -230 936 95 0 0 chr9 35239932 35240048 -107031396 - AluSq/x SINE Alu -187 126 11 804 168 7 21 chr9 35240058 35240201 -107031243 - FRAM SINE Alu -14 162 22 2087 234 106 91 chr9 35240287 35240686 -107030758 + L1M4 LINE L1 3657 4048 -2098 2412 84 0 7 chr9 35240686 35240984 -107030460 - AluSp SINE Alu -17 296 1 2087 234 106 91 chr9 35240984 35241173 -107030271 + L1M4 LINE L1 4048 4233 -1913 2260 116 0 0 chr9 35241173 35241474 -107029970 - AluSx SINE Alu -11 301 1 2087 234 106 91 chr9 35241474 35241674 -107029770 + L1M4 LINE L1 4233 4428 -1718 1857 174 0 3 chr9 35241674 35241979 -107029465 + AluJb SINE Alu 1 304 -8 2087 234 106 91 chr9 35241979 35242459 -107028985 + L1M4 LINE L1 4428 4947 -1199 1144 102 0 0 chr9 35242538 35242685 -107028759 - AluSq/x SINE Alu -166 147 1 180 256 0 23 chr9 35242697 35242740 -107028704 - MIR SINE MIR -204 58 17 4152 122 3 35 chr9 35243550 35244059 -107027385 - MER41B LTR ERV1 0 635 150 2345 92 14 0 chr9 35244059 35244354 -107027090 - AluSq SINE Alu -14 299 1 4152 122 3 35 chr9 35244354 35244500 -107026944 - MER41B LTR ERV1 -485 150 1 350 175 155 19 chr9 35245879 35245982 -107025462 + MIR SINE MIR 23 139 -69 553 306 69 14 chr9 35246989 35247234 -107024210 - L1MC4a LINE L1 -297 5824 5594 2146 117 7 19 chr9 35247953 35248261 -107023183 - AluSx SINE Alu -8 304 1 2311 89 7 7 chr9 35248275 35248577 -107022867 - AluSp SINE Alu -11 302 1 3102 177 41 34 chr9 35248643 35249388 -107022056 - L1MB3 LINE L1 -58 6125 5415 207 171 0 0 chr9 35249807 35249842 -107021602 + GA-rich Low_complexity Low_complexity 1 35 0 201 254 0 14 chr9 35249957 35250028 -107021416 - MIR SINE MIR -132 130 61 574 179 24 41 chr9 35251240 35251363 -107020081 - MIR SINE MIR -10 252 132 982 177 143 55 chr9 35251367 35251604 -107019840 + AluJo SINE Alu 43 300 -12 459 202 91 0 chr9 35251614 35251713 -107019731 - MIR SINE MIR -120 142 35 343 265 10 0 chr9 35251731 35251833 -107019611 + (TG)n Simple_repeat Simple_repeat 2 104 0 431 243 9 19 chr9 35251934 35252041 -107019403 + MER21B LTR ERV1 1 106 -757 3767 189 46 45 chr9 35252099 35252664 -107018780 + MER21B LTR ERV1 19 587 -276 507 261 25 0 chr9 35252664 35252783 -107018661 + FLAM_A SINE Alu 1 122 -11 3767 189 46 45 chr9 35252783 35253058 -107018386 + MER21B LTR ERV1 587 860 -3 348 254 122 6 chr9 35253526 35253675 -107017769 - MIR SINE MIR -5 257 90 264 77 0 0 chr9 35254390 35254429 -107017015 + (A)n Simple_repeat Simple_repeat 1 39 0 266 314 42 0 chr9 35258619 35258737 -107012707 + L1MC5 LINE L1 7805 7927 -34 2191 85 29 0 chr9 35259370 35259651 -107011793 - AluSc SINE Alu -10 299 11 2344 100 7 7 chr9 35259661 35259962 -107011482 - AluSx SINE Alu -11 301 1 1740 152 22 51 chr9 35261520 35261835 -107009609 + AluJo SINE Alu 4 309 -3 2399 103 0 0 chr9 35262000 35262301 -107009143 - AluSx SINE Alu -11 301 1 1949 159 3 0 chr9 35262574 35262870 -107008574 + AluJo SINE Alu 1 297 -15 1880 171 3 0 chr9 35263042 35263346 -107008098 + AluJb SINE Alu 1 305 -7 608 208 47 57 chr9 35263902 35264113 -107007331 + L1MC/D LINE L1 5612 5822 -511 1814 134 14 38 chr9 35264496 35264786 -107006658 - AluSx SINE Alu -6 306 24 381 236 130 24 chr9 35264793 35264916 -107006528 + L2 LINE L2 3167 3302 -11 198 0 0 0 chr9 35264922 35264944 -107006500 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1599 152 53 8 chr9 35265376 35265640 -107005804 + AluJb SINE Alu 1 276 -36 210 37 0 0 chr9 35265647 35265674 -107005770 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1098 68 8 0 chr9 35266002 35266134 -107005310 + AluSq/x SINE Alu 1 133 -179 2401 89 3 0 chr9 35266137 35266441 -107005003 + AluSx SINE Alu 2 306 -6 298 267 58 0 chr9 35267512 35267598 -107003846 + MIR SINE MIR 56 146 -116 472 146 49 12 chr9 35267694 35267776 -107003668 + AluJb SINE Alu 203 287 -25 217 200 25 0 chr9 35268620 35268660 -107002784 - L2 LINE L2 -665 2649 2609 719 209 0 22 chr9 35269584 35269718 -107001726 - FLAM_A SINE Alu -2 131 1 2403 57 0 7 chr9 35270079 35270402 -107001042 - AluY SINE Alu 0 321 1 779 280 13 59 chr9 35270581 35270970 -107000474 + L1ME4a LINE L1 5561 5931 -190 209 289 0 0 chr9 35271178 35271223 -107000221 + (TGG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr9 35271236 35271256 -107000188 + (TC)n Simple_repeat Simple_repeat 2 21 0 467 248 38 15 chr9 35274153 35274286 -106997158 - MIR SINE MIR -126 136 1 327 281 97 0 chr9 35274337 35274451 -106996993 + MIR SINE MIR 21 145 -117 258 156 0 0 chr9 35274713 35274758 -106996686 + (TG)n Simple_repeat Simple_repeat 1 45 0 224 291 12 12 chr9 35275221 35275307 -106996137 + A-rich Low_complexity Low_complexity 1 86 0 261 287 128 0 chr9 35275538 35275632 -106995812 - MER103 DNA DNA -48 118 13 207 0 0 0 chr9 35276028 35276051 -106995393 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2380 81 0 0 chr9 35276053 35276337 -106995107 - AluSx SINE Alu -23 289 6 498 331 60 36 chr9 35276342 35276623 -106994821 - L3 LINE CR1 -1041 536 249 226 208 0 38 chr9 35278751 35278804 -106992640 - MER81 DNA DNA -62 52 2 258 301 0 106 chr9 35278902 35279015 -106992429 + MIR SINE MIR 21 121 -87 399 41 0 0 chr9 35279030 35279079 -106992365 + (TG)n Simple_repeat Simple_repeat 1 49 0 506 279 65 0 chr9 35279656 35279810 -106991634 - MER103 DNA DNA -1 165 2 228 360 110 15 chr9 35280716 35280852 -106990592 - MER5A DNA MER1_type -1 188 40 404 236 24 97 chr9 35281353 35281518 -106989926 + MIR3 SINE MIR 23 175 -33 183 263 177 70 chr9 35281767 35282083 -106989361 + L2 LINE L2 2142 2491 -823 222 211 0 0 chr9 35282083 35282135 -106989309 + (CA)n Simple_repeat Simple_repeat 2 53 0 203 260 96 87 chr9 35282277 35282381 -106989063 - L2 LINE L2 -9 3263 3159 29 0 0 0 chr9 35283617 35283646 -106987798 + AT_rich Low_complexity Low_complexity 1 29 0 197 313 50 0 chr9 35284112 35284192 -106987252 + L2 LINE L2 2979 3062 -210 2058 107 16 55 chr9 35284362 35284672 -106986772 + AluSx SINE Alu 1 298 -14 2478 89 0 0 chr9 35285117 35285420 -106986024 - AluSc SINE Alu -6 303 1 800 172 146 0 chr9 35285750 35285901 -106985543 - FRAM SINE Alu -6 170 1 2379 117 0 0 chr9 35286002 35286311 -106985133 + AluSx SINE Alu 1 309 -3 506 281 26 42 chr9 35286634 35286826 -106984618 - MER5A DNA MER1_type 0 189 1 1668 152 23 43 chr9 35287021 35287323 -106984121 - AluJo SINE Alu -16 296 1 2272 97 0 19 chr9 35287367 35287677 -106983767 - AluSg SINE Alu -6 304 1 2332 114 0 22 chr9 35289823 35290140 -106981304 - AluSx SINE Alu -2 310 1 188 321 0 0 chr9 35290282 35290338 -106981106 + L2 LINE L2 3258 3313 0 2006 138 20 0 chr9 35290382 35290686 -106980758 - AluSx SINE Alu -2 310 1 1457 185 8 20 chr9 35290931 35291185 -106980259 + AluJo SINE Alu 42 292 -20 668 282 48 40 chr9 35291189 35291572 -106979872 + L1ME1 LINE L1 5192 5585 -585 229 351 27 21 chr9 35291610 35291798 -106979646 + L1ME1 LINE L1 5678 5866 -304 3739 189 48 115 chr9 35291803 35292410 -106979034 + L1MC4 LINE L1 6760 7406 -636 2016 150 6 19 chr9 35292410 35292724 -106978720 - AluSx SINE Alu -2 310 1 3739 189 48 115 chr9 35292724 35293373 -106978071 + L1MC4 LINE L1 7406 8097 55 297 0 0 0 chr9 35293373 35293406 -106978038 + (CA)n Simple_repeat Simple_repeat 2 34 0 192 40 0 0 chr9 35293405 35293430 -106978014 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 3739 189 48 115 chr9 35293406 35293539 -106977905 + L1MC4 LINE L1 8096 8035 -7 23 0 0 0 chr9 35293540 35293563 -106977881 + AT_rich Low_complexity Low_complexity 1 23 0 941 238 57 5 chr9 35293619 35293886 -106977558 + L1ME1 LINE L1 5889 6147 -19 207 146 0 0 chr9 35294104 35294145 -106977299 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 207 318 127 16 chr9 35294678 35294804 -106976640 + MIR SINE MIR 117 256 -6 584 274 100 53 chr9 35295038 35295175 -106976269 + L1ME LINE L1 5027 5156 -990 2023 106 51 0 chr9 35295175 35295449 -106975995 + AluSx SINE Alu 1 288 -24 549 0 0 0 chr9 35295449 35295510 -106975934 + (CATAA)n Simple_repeat Simple_repeat 2 62 0 584 274 100 53 chr9 35295510 35295731 -106975713 + L1ME LINE L1 5155 5391 -755 451 256 72 84 chr9 35295698 35295734 -106975710 + L1ME4a LINE L1 5313 5348 -825 * 2030 149 10 0 chr9 35295734 35296029 -106975415 + AluSx SINE Alu 1 298 -14 451 256 72 84 chr9 35296029 35296057 -106975387 + L1ME4a LINE L1 5348 5375 -798 793 143 0 50 chr9 35296057 35296197 -106975247 + FLAM_A SINE Alu 1 133 0 451 256 72 84 chr9 35296197 35296406 -106975038 + L1ME4a LINE L1 5375 5595 -578 3204 175 57 136 chr9 35296427 35297644 -106973800 + L1M4 LINE L1 3040 4160 -1986 1233 118 133 0 chr9 35297881 35298084 -106973360 - MER30 DNA MER1_type 0 230 1 447 313 18 37 chr9 35298252 35298415 -106973029 - MIR3 SINE MIR -15 193 34 2088 99 0 0 chr9 35299291 35299573 -106971871 - AluSx SINE Alu -30 282 1 454 83 0 62 chr9 35300203 35300299 -106971145 + (CA)n Simple_repeat Simple_repeat 2 91 0 360 316 30 18 chr9 35300405 35300573 -106970871 + L1ME LINE L1 5558 5727 -394 677 205 87 22 chr9 35300919 35301104 -106970340 - MIR SINE MIR 0 262 66 232 346 57 6 chr9 35301281 35301440 -106970004 - MIR3 SINE MIR -6 202 36 274 312 114 53 chr9 35303318 35303626 -106967818 + L1ME4a LINE L1 5630 5975 -146 1933 128 20 3 chr9 35303626 35303922 -106967522 + AluJb SINE Alu 3 303 -9 274 312 114 53 chr9 35303922 35304062 -106967382 + L1ME4a LINE L1 5975 6105 -16 225 0 0 0 chr9 35304161 35304186 -106967258 + (TC)n Simple_repeat Simple_repeat 2 26 0 209 194 0 0 chr9 35305404 35305440 -106966004 + GA-rich Low_complexity Low_complexity 2 37 0 244 342 83 8 chr9 35305492 35305612 -106965832 + L2 LINE L2 3126 3254 -18 1863 104 47 24 chr9 35308110 35308407 -106963037 - AluSx SINE Alu -8 304 1 252 341 65 8 chr9 35308434 35308557 -106962887 - MIR SINE MIR -70 192 63 247 203 176 68 chr9 35309266 35309414 -106962030 - MIR SINE MIR -13 249 86 21 0 0 0 chr9 35310358 35310379 -106961065 + GC_rich Low_complexity Low_complexity 1 21 0 263 194 29 80 chr9 35310471 35310646 -106960798 + (CGGGG)n Simple_repeat Simple_repeat 4 169 0 243 273 127 18 chr9 35311267 35311377 -106960067 - MIR SINE MIR -92 170 49 232 250 19 0 chr9 35311644 35311696 -106959748 - MIR SINE MIR -93 169 117 1682 269 166 16 chr9 35311734 35312658 -106958786 + L2 LINE L2 2003 3135 -178 2286 80 3 3 chr9 35312658 35312960 -106958484 - AluSq SINE Alu -11 302 1 1682 269 166 16 chr9 35312960 35313107 -106958337 + L2 LINE L2 3135 3259 -54 2372 70 0 3 chr9 35313108 35313409 -106958035 - AluY SINE Alu -11 300 1 946 264 174 62 chr9 35314256 35314693 -106956751 - MLT1G1 LTR MaLR 0 595 100 1612 199 0 0 chr9 35314693 35314994 -106956450 - AluJo SINE Alu -11 301 1 946 264 174 62 chr9 35314994 35315026 -106956418 - MLT1G1 LTR MaLR -495 100 73 406 150 38 184 chr9 35315184 35315383 -106956061 - LTR45B LTR ERV1 0 525 319 230 277 40 10 chr9 35315472 35315573 -106955871 - MER72 LTR ERV1 -247 475 372 708 160 109 0 chr9 35315793 35315912 -106955532 + FLAM_C SINE Alu 2 133 0 1681 218 72 47 chr9 35316239 35316261 -106955183 + L1MC4a LINE L1 6444 6464 -1344 2174 101 0 3 chr9 35316261 35316569 -106954875 + AluSx SINE Alu 1 307 -5 1681 218 72 47 chr9 35316569 35316731 -106954713 + L1MC4a LINE L1 6464 6620 -1188 360 0 0 0 chr9 35316731 35316771 -106954673 + (TG)n Simple_repeat Simple_repeat 2 41 0 1681 218 72 47 chr9 35316771 35317123 -106954321 + L1MC4a LINE L1 6620 6995 -813 404 169 53 43 chr9 35317161 35317294 -106954150 + L1MC4 LINE L1 7382 7473 -312 2113 109 0 0 chr9 35317508 35317792 -106953652 + AluSx SINE Alu 3 286 -26 2257 102 0 9 chr9 35317813 35318128 -106953316 + AluSx SINE Alu 1 312 0 279 0 0 0 chr9 35318130 35318161 -106953283 + (TA)n Simple_repeat Simple_repeat 2 32 0 1658 184 10 7 chr9 35318169 35318478 -106952966 + AluJo SINE Alu 1 310 -2 566 249 127 0 chr9 35318479 35318644 -106952800 + L1MC4 LINE L1 7701 7886 -156 1904 128 21 107 chr9 35318650 35319025 -106952419 + MER7A DNA MER2_type 6 346 0 2002 130 53 0 chr9 35319658 35319981 -106951463 + L1PA16 LINE L1 5807 6146 -20 238 261 0 15 chr9 35320471 35320536 -106950908 - MLT1G1-int LTR MaLR -1303 68 5 1030 249 14 0 chr9 35320556 35320777 -106950667 + MER58A DNA MER1_type 1 224 0 1028 265 124 43 chr9 35320806 35321126 -106950318 - MLT1G1 LTR MaLR -24 531 156 1927 141 0 7 chr9 35321126 35321431 -106950013 - AluJb SINE Alu -9 303 1 1028 265 124 43 chr9 35321431 35321601 -106949843 - MLT1G1 LTR MaLR -399 156 1 284 212 91 40 chr9 35321967 35322066 -106949378 - MLT1I LTR MaLR -25 384 281 505 259 169 15 chr9 35322150 35322351 -106949093 - MLT1H LTR MaLR -289 260 29 1066 331 60 50 chr9 35322496 35322695 -106948749 - L3 LINE CR1 -7 1570 1374 1553 196 73 3 chr9 35322695 35323037 -106948407 + MER47A DNA MER2_type 1 366 0 1066 331 60 50 chr9 35323037 35323215 -106948229 - L3 LINE CR1 -203 1374 1199 850 144 8 0 chr9 35323215 35323340 -106948104 - FLAM_A SINE Alu -7 126 1 1066 331 60 50 chr9 35323340 35323560 -106947884 - L3 LINE CR1 -378 1199 966 212 321 60 36 chr9 35323566 35323650 -106947794 - L3 LINE CR1 -931 646 561 370 277 56 90 chr9 35323762 35324029 -106947415 - LTR67 LTR ERVL -297 260 3 368 306 67 50 chr9 35324055 35324235 -106947209 - L3 LINE CR1 -1052 525 343 1701 165 0 14 chr9 35324277 35324562 -106946882 + AluJo SINE Alu 1 281 -31 333 0 0 0 chr9 35324563 35324600 -106946844 + (CA)n Simple_repeat Simple_repeat 2 38 0 579 269 110 57 chr9 35324673 35324937 -106946507 + MLT1K LTR MaLR 40 317 -271 720 166 35 28 chr9 35324951 35325096 -106946348 - MLT1B LTR MaLR 0 390 245 552 142 28 75 chr9 35325135 35325241 -106946203 - AluJo SINE Alu -127 185 85 1338 186 66 30 chr9 35325245 35325578 -106945866 - MLT1C LTR MaLR -122 345 1 396 224 69 46 chr9 35325969 35326143 -106945301 - L1MC5 LINE L1 -35 7926 7749 1431 192 19 26 chr9 35326144 35326410 -106945034 + Tigger7 DNA MER2_type 1 264 -2223 4458 18 4 0 chr9 35326427 35326935 -106944509 + L1PA3 LINE L1 5646 6155 0 3127 62 2 5 chr9 35326935 35327320 -106944124 + L1PA7 LINE L1 5754 6153 -1 186 43 0 0 chr9 35327359 35327382 -106944062 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 315 0 0 0 chr9 35327393 35327428 -106944016 + (CA)n Simple_repeat Simple_repeat 2 36 0 525 165 10 21 chr9 35327428 35327525 -106943919 + Tigger7 DNA MER2_type 2492 2587 0 226 250 45 0 chr9 35327654 35327698 -106943746 - L2 LINE L2 -86 3186 3141 372 263 286 0 chr9 35327727 35327860 -106943584 - MER5A DNA MER1_type -10 179 9 288 205 14 14 chr9 35328206 35328277 -106943167 + MLT1K LTR MaLR 140 246 -342 1927 135 3 7 chr9 35328607 35328910 -106942534 + AluSx SINE Alu 1 302 -10 491 269 0 0 chr9 35329412 35329520 -106941924 - MER81 DNA DNA -6 108 1 236 235 204 68 chr9 35329688 35329820 -106941624 + MIR SINE MIR 36 185 -77 204 293 53 40 chr9 35332159 35332234 -106939210 - L2 LINE L2 -190 3082 3007 252 262 243 0 chr9 35332672 35332775 -106938669 + L2 LINE L2 3145 3272 0 776 162 7 37 chr9 35333123 35333259 -106938185 - FLAM_A SINE Alu -1 132 1 539 285 135 39 chr9 35333266 35333599 -106937845 - MLT1K LTR MaLR -14 574 210 324 177 102 129 chr9 35333713 35333860 -106937584 - MIR SINE MIR -56 206 64 2263 86 0 0 chr9 35333860 35334152 -106937292 - AluSx SINE Alu -20 292 1 352 313 89 36 chr9 35334517 35334741 -106936703 + L1ME LINE L1 5409 5644 -477 595 261 49 126 chr9 35334749 35334906 -106936538 + L1M4 LINE L1 2197 2365 -3781 2340 67 10 22 chr9 35334906 35335220 -106936224 + AluSp SINE Alu 2 311 -2 595 261 49 126 chr9 35335220 35335515 -106935929 + L1M4 LINE L1 2365 2614 -3532 873 144 7 7 chr9 35335562 35335715 -106935729 + AluJb SINE Alu 1 153 -159 234 300 40 20 chr9 35336336 35336486 -106934958 + L1P LINE L1 4906 5058 -1088 739 192 23 0 chr9 35336961 35337091 -106934353 - FLAM_A SINE Alu 0 133 1 873 152 0 28 chr9 35337208 35337353 -106934091 + AluJb SINE Alu 157 297 -15 1900 94 3 76 chr9 35337382 35337533 -106933911 + AluSc SINE Alu 5 121 -188 2349 75 0 0 chr9 35337533 35337841 -106933603 + AluY SINE Alu 1 308 -3 1900 94 3 76 chr9 35337841 35338018 -106933426 + AluSc SINE Alu 121 309 0 1750 162 20 23 chr9 35338086 35338388 -106933056 + AluJo SINE Alu 1 301 -11 2736 138 115 29 chr9 35338393 35338913 -106932531 + MER34B LTR ERV1 1 565 0 1948 154 0 0 chr9 35339042 35339340 -106932104 + AluJo SINE Alu 1 298 -14 420 273 34 89 chr9 35339378 35339480 -106931964 + L1MEd LINE L1 943 1049 -1441 1733 117 95 0 chr9 35339480 35339753 -106931691 + AluSx SINE Alu 1 299 -13 420 273 34 89 chr9 35339753 35340060 -106931384 + L1MEd LINE L1 1049 1417 -1073 281 301 106 24 chr9 35340565 35340688 -106930756 + MIR3 SINE MIR 13 145 -63 2078 124 61 28 chr9 35340872 35341235 -106930209 + THE1C LTR MaLR 1 375 0 737 218 6 6 chr9 35341642 35341798 -106929646 - MER103 DNA DNA -9 157 2 323 360 124 0 chr9 35341846 35342071 -106929373 - L2 LINE L2 -1025 2289 2037 2313 187 63 33 chr9 35342089 35342139 -106929305 + MLT2B3 LTR ERVL 3 50 -504 2358 72 0 7 chr9 35342139 35342445 -106928999 + AluY SINE Alu 1 304 -7 2313 187 63 33 chr9 35342445 35342885 -106928559 + MLT2B3 LTR ERVL 50 508 -46 1463 154 14 7 chr9 35342895 35343158 -106928286 + MER49 LTR ERV1 1 262 -641 235 222 0 21 chr9 35343142 35343209 -106928235 + MER4D LTR ERV1 107 280 -592 * 1542 228 8 34 chr9 35343237 35343592 -106927852 + MER4D LTR ERV1 558 903 0 313 70 26 0 chr9 35343624 35343676 -106927768 + MLT2B3 LTR ERVL 464 554 0 324 294 183 16 chr9 35343763 35343889 -106927555 + MER5A DNA MER1_type 37 183 -6 752 226 144 82 chr9 35344338 35344475 -106926969 + MLT1J LTR MaLR 20 147 -364 1918 115 0 0 chr9 35344475 35344745 -106926699 + AluY SINE Alu 29 298 -13 752 226 144 82 chr9 35344745 35344926 -106926518 + MLT1J LTR MaLR 147 358 -153 1682 163 10 10 chr9 35344927 35345221 -106926223 + AluJb SINE Alu 1 294 -18 468 307 68 0 chr9 35345242 35345418 -106926026 - L2 LINE L2 -1351 1963 1776 340 356 43 16 chr9 35346886 35346953 -106924491 + MIR SINE MIR 20 84 -178 659 202 0 23 chr9 35346953 35347082 -106924362 - FLAM_A SINE Alu -7 126 1 340 356 43 16 chr9 35347082 35347202 -106924242 + MIR SINE MIR 84 212 -50 425 226 169 8 chr9 35347379 35347503 -106923941 + MER5A DNA MER1_type 39 182 -7 428 263 92 89 chr9 35347851 35348132 -106923312 - MLT1J LTR MaLR 0 511 230 2321 79 31 0 chr9 35348751 35349042 -106922402 - AluY SINE Alu -11 300 1 1983 171 0 7 chr9 35349095 35349399 -106922045 + AluJo SINE Alu 1 302 -10 425 299 45 8 chr9 35349442 35349576 -106921868 + L2 LINE L2 3175 3313 0 213 318 0 56 chr9 35350527 35350593 -106920851 - MIR SINE MIR -65 143 84 2395 155 23 3 chr9 35350593 35350981 -106920463 - MSTD LTR MaLR 0 396 1 213 318 0 56 chr9 35350981 35351021 -106920423 - MIR SINE MIR -124 84 43 487 286 67 28 chr9 35351098 35351222 -106920222 + MLT1J2 LTR MaLR 63 181 -269 2282 107 0 7 chr9 35351222 35351521 -106919923 + AluSx SINE Alu 1 297 -15 487 286 67 28 chr9 35351521 35351749 -106919695 + MLT1J2 LTR MaLR 181 450 0 384 309 140 22 chr9 35351851 35352029 -106919415 + MIR SINE MIR 3 201 -61 661 248 149 14 chr9 35352032 35352314 -106919130 + MER20B DNA MER1_type 1 320 -463 614 237 0 23 chr9 35352319 35352450 -106918994 - FLAM_A SINE Alu -5 128 1 902 217 170 59 chr9 35352654 35353077 -106918367 - MLT1D LTR MaLR -1 389 3 1241 70 0 0 chr9 35353084 35353240 -106918204 - MSTA LTR MaLR 0 428 273 497 175 12 0 chr9 35353240 35353320 -106918124 - AluJb SINE Alu -189 123 43 853 226 81 23 chr9 35353348 35353657 -106917787 - MER20B DNA MER1_type -2 781 455 1730 86 25 0 chr9 35353658 35353902 -106917542 - MSTA LTR MaLR -178 250 1 234 265 0 0 chr9 35354055 35354123 -106917321 - LTR33 LTR ERVL -440 81 14 1136 235 79 37 chr9 35354134 35354400 -106917044 + MER20B DNA MER1_type 334 626 -157 2404 110 3 0 chr9 35354400 35354710 -106916734 - AluSx SINE Alu -1 311 1 1136 235 79 37 chr9 35354710 35354873 -106916571 + MER20B DNA MER1_type 626 781 -2 235 239 0 30 chr9 35355380 35355447 -106915997 + GA-rich Low_complexity Low_complexity 6 70 0 977 133 10 77 chr9 35355906 35356030 -106915414 - MER5A DNA MER1_type -6 183 75 2403 87 0 3 chr9 35356030 35356329 -106915115 + AluSx SINE Alu 1 298 -14 977 133 10 77 chr9 35356329 35356400 -106915044 - MER5A DNA MER1_type -114 75 1 488 263 42 133 chr9 35356447 35356634 -106914810 - L2 LINE L2 0 3313 3111 1665 174 35 3 chr9 35356634 35356916 -106914528 + AluJo SINE Alu 1 291 -21 2135 80 0 8 chr9 35356925 35357187 -106914257 + AluSg SINE Alu 36 295 -15 488 263 42 133 chr9 35357187 35357320 -106914124 - L2 LINE L2 -210 3103 3013 212 352 0 0 chr9 35357484 35357589 -106913855 + (TGAA)n Simple_repeat Simple_repeat 3 107 0 377 345 81 21 chr9 35358586 35358870 -106912574 + L1ME4a LINE L1 5329 5629 -492 309 284 0 0 chr9 35358988 35359069 -106912375 + L1ME4a LINE L1 5689 5769 -352 1873 175 17 0 chr9 35359094 35359385 -106912059 - AluJb SINE Alu -16 296 1 1904 228 78 72 chr9 35360105 35360789 -106910655 + LTR41 LTR ERVL 1 688 -85 1926 118 21 7 chr9 35360825 35361112 -106910332 - AluSx SINE Alu -21 291 1 716 296 59 9 chr9 35361385 35361853 -106909591 + LTR33 LTR ERVL 1 521 0 2317 100 3 3 chr9 35361970 35362279 -106909165 + AluSg SINE Alu 2 310 0 687 211 113 24 chr9 35362544 35362791 -106908653 + L1ME4a LINE L1 5847 6115 -6 1745 186 19 13 chr9 35362791 35363098 -106908346 - AluJo SINE Alu -3 309 1 2284 121 0 6 chr9 35363207 35363521 -106907923 - AluSx SINE Alu 0 312 1 316 252 269 0 chr9 35365126 35365245 -106906199 - MER5A DNA MER1_type 0 189 39 1572 103 0 10 chr9 35365571 35365775 -106905669 - AluSg/x SINE Alu -26 286 85 285 288 112 0 chr9 35365913 35366038 -106905406 + MER103 DNA DNA 25 163 -3 192 48 0 129 chr9 35366250 35366312 -106905132 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 2095 88 62 0 chr9 35366331 35366605 -106904839 - AluSx SINE Alu -17 295 5 1254 189 14 5 chr9 35366998 35367215 -106904229 + MER20 DNA MER1_type 1 219 0 1051 174 32 21 chr9 35367572 35367945 -106903499 - L1MA4A LINE L1 -4 6299 5862 246 323 24 60 chr9 35368023 35368089 -106903355 + L1ME LINE L1 5629 5696 -466 2319 89 7 26 chr9 35368089 35368393 -106903051 - AluSp SINE Alu -15 298 1 246 323 24 60 chr9 35368393 35368574 -106902870 + L1ME LINE L1 5696 5867 -295 833 160 0 0 chr9 35368588 35368713 -106902731 + FLAM_C SINE Alu 9 133 -10 1965 237 61 23 chr9 35368974 35369585 -106901859 - L1ME2 LINE L1 -1 6163 5530 691 190 171 19 chr9 35369590 35369795 -106901649 + L1ME2 LINE L1 5288 5523 -651 315 0 0 0 chr9 35369808 35369843 -106901601 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 351 0 0 chr9 35370245 35370302 -106901142 + polypyrimidine Low_complexity Low_complexity 2 58 0 247 254 130 47 chr9 35370302 35370347 -106901097 - MIR SINE MIR -4 258 218 2254 110 0 13 chr9 35370347 35370647 -106900797 - AluSx SINE Alu -16 296 1 247 254 130 47 chr9 35370647 35370707 -106900737 - MIR SINE MIR -44 218 164 1606 168 36 4 chr9 35370707 35370981 -106900463 - AluJo SINE Alu -25 287 5 247 254 130 47 chr9 35370981 35371043 -106900401 - MIR SINE MIR -98 164 76 1336 218 160 14 chr9 35371053 35371484 -106899960 - MLT1D LTR MaLR -11 494 1 187 358 12 25 chr9 35371484 35371565 -106899879 - MIR3 SINE MIR -126 82 3 438 293 9 61 chr9 35372325 35372475 -106898969 + MIR SINE MIR 14 154 -66 326 272 18 18 chr9 35373007 35373121 -106898323 + MLT1K LTR MaLR 151 264 -324 241 213 53 40 chr9 35373425 35373500 -106897944 - MER91C DNA MER1_type -64 76 1 306 191 135 11 chr9 35373501 35373590 -106897854 - MIR SINE MIR -69 139 40 1617 98 0 0 chr9 35373796 35373999 -106897445 + AluSg/x SINE Alu 98 300 -12 1782 148 52 14 chr9 35374173 35374464 -106896980 + AluJb SINE Alu 1 302 -10 1290 269 73 19 chr9 35374557 35375022 -106896422 + LTR16C LTR ERVL 2 491 0 229 253 25 25 chr9 35375023 35375102 -106896342 + LTR67 LTR ERVL 469 547 -10 489 297 123 59 chr9 35375927 35376561 -106894883 - L2 LINE L2 -261 3011 2337 372 258 92 50 chr9 35376662 35376782 -106894662 + L2 LINE L2 3141 3265 -7 199 300 0 50 chr9 35377693 35377773 -106893671 - MIR SINE MIR -73 135 60 896 298 172 7 chr9 35377792 35378198 -106893246 + L2 LINE L2 2836 3308 -5 1961 155 0 3 chr9 35378525 35378815 -106892629 - AluJb SINE Alu -23 289 1 289 319 37 30 chr9 35378815 35378939 -106892505 - L2 LINE L2 -14 3299 3172 372 339 46 27 chr9 35379154 35379526 -106891918 - L2 LINE L2 -418 2896 2518 619 344 82 30 chr9 35379629 35380068 -106891376 + L2 LINE L2 2811 3272 0 282 298 217 12 chr9 35380633 35380794 -106890650 + L3 LINE CR1 1344 1537 -40 1920 126 22 0 chr9 35380795 35380995 -106890449 - AluSx SINE Alu 0 333 123 333 0 0 0 chr9 35380995 35381032 -106890412 + (TG)n Simple_repeat Simple_repeat 2 38 0 1920 126 22 0 chr9 35381032 35381158 -106890286 - AluSx SINE Alu -210 123 1 288 0 0 0 chr9 35381162 35381194 -106890250 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1933 101 7 22 chr9 35381201 35381478 -106889966 - AluSx SINE Alu -39 273 1 21 0 0 0 chr9 35381766 35381787 -106889657 + AT_rich Low_complexity Low_complexity 1 21 0 906 121 8 0 chr9 35381787 35381911 -106889533 - FLAM_C SINE Alu -7 126 2 238 189 19 0 chr9 35381945 35381998 -106889446 + L1MC4 LINE L1 7987 8040 -2 339 287 10 10 chr9 35382020 35382121 -106889323 - MER5B DNA MER1_type -77 101 1 2178 104 7 3 chr9 35382301 35382598 -106888846 + AluSg SINE Alu 1 298 -12 245 328 88 19 chr9 35382799 35382978 -106888466 - MIR3 SINE MIR -52 156 1 279 231 25 32 chr9 35382981 35383072 -106888372 + CT-rich Low_complexity Low_complexity 1 90 0 303 263 136 8 chr9 35383551 35383669 -106887775 + MIR SINE MIR 20 152 -56 1306 214 104 33 chr9 35383955 35384572 -106886872 - L2 LINE L2 -32 3281 2626 227 27 0 54 chr9 35384806 35384843 -106886601 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 2103 113 0 31 chr9 35385000 35385291 -106886153 - AluSg SINE Alu -5 305 24 192 308 92 25 chr9 35385480 35385600 -106885844 - L2 LINE L2 -213 3059 2932 1289 0 74 302 chr9 35385813 35386013 -106885431 - L1ME2 LINE L1 -22 6142 6011 1851 125 0 47 chr9 35386013 35386188 -106885256 - AluJo SINE Alu -12 300 141 1993 138 3 17 chr9 35386188 35386510 -106884934 - AluSx SINE Alu 0 312 1 1851 125 0 47 chr9 35386510 35386613 -106884831 - AluJo SINE Alu -171 141 35 1289 0 74 302 chr9 35386613 35386883 -106884561 - L1ME2 LINE L1 -153 6011 5681 781 331 70 31 chr9 35386904 35387348 -106884096 - L3 LINE CR1 -13 1564 1104 355 321 72 27 chr9 35387634 35387859 -106883585 - LTR16A LTR ERVL -221 229 2 418 324 29 7 chr9 35387980 35388119 -106883325 - L3 LINE CR1 -497 1080 939 470 303 42 19 chr9 35388910 35389095 -106882349 - MIR SINE MIR -23 239 43 205 342 0 0 chr9 35389515 35389591 -106881853 + (CA)n Simple_repeat Simple_repeat 2 77 0 368 297 110 0 chr9 35390142 35390260 -106881184 - L2 LINE L2 0 3313 3183 2286 85 10 33 chr9 35390298 35390605 -106880839 - AluSx SINE Alu -12 300 1 325 333 144 11 chr9 35391057 35391426 -106880018 - L2 LINE L2 -774 2540 2123 1553 125 92 60 chr9 35392027 35392308 -106879136 + AluJo SINE Alu 10 299 -13 384 167 42 0 chr9 35393128 35393200 -106878244 - MLT1J LTR MaLR -9 502 428 971 244 116 0 chr9 35393230 35393549 -106877895 - MLT1J LTR MaLR -152 359 4 2462 99 3 0 chr9 35394128 35394484 -106876960 - AluSp SINE Alu 0 357 1 230 296 0 0 chr9 35394524 35394578 -106876866 - L2 LINE L2 -224 3048 2995 2058 146 0 3 chr9 35394604 35394912 -106876532 + AluSx SINE Alu 1 307 -5 213 229 0 0 chr9 35395603 35395651 -106875793 - L2 LINE L2 0 3313 3266 238 143 63 0 chr9 35395672 35395735 -106875709 + (TA)n Simple_repeat Simple_repeat 2 68 0 480 308 89 54 chr9 35395931 35396317 -106875127 - L2 LINE L2 -221 3051 2636 767 263 83 33 chr9 35396380 35396620 -106874824 + MIR SINE MIR 2 253 -9 828 158 0 0 chr9 35396999 35397119 -106874325 - FLAM_A SINE Alu -13 120 1 453 161 0 69 chr9 35397046 35397123 -106874321 - AluJ/F(R)AM SINE Alu -103 209 137 1934 144 3 33 chr9 35397123 35397428 -106874016 - AluSx SINE Alu -16 296 1 269 240 83 52 chr9 35399735 35399831 -106871613 + L2 LINE L2 3152 3250 -22 510 274 67 17 chr9 35400338 35400517 -106870927 + MIR SINE MIR 17 204 -58 412 281 110 16 chr9 35400696 35400942 -106870502 + L1ME4a LINE L1 5575 5843 -278 2242 87 10 26 chr9 35401152 35401461 -106869983 + AluSx SINE Alu 1 304 -8 185 291 26 68 chr9 35401520 35401637 -106869807 + MIR3 SINE MIR 86 197 -11 487 266 158 0 chr9 35401784 35402006 -106869438 - MIR SINE MIR -1 261 5 2198 110 7 10 chr9 35402217 35402525 -106868919 + AluSx SINE Alu 1 307 -5 521 253 121 0 chr9 35402955 35403121 -106868323 - MIR SINE MIR -11 251 66 897 211 12 0 chr9 35403139 35403305 -106868139 - FAM SINE Alu -3 172 5 419 265 15 29 chr9 35404435 35404571 -106866873 + L1ME LINE L1 5615 5748 -418 25 0 0 0 chr9 35404794 35404819 -106866625 + AT_rich Low_complexity Low_complexity 1 25 0 237 182 0 73 chr9 35405341 35405396 -106866048 + L2 LINE L2 3263 3313 0 2540 83 3 0 chr9 35405515 35405827 -106865617 + AluSq SINE Alu 1 313 0 375 278 104 26 chr9 35406158 35406388 -106865056 - MIR SINE MIR -1 261 14 191 290 130 0 chr9 35406702 35406802 -106864642 - MIR SINE MIR -66 142 30 2129 115 0 3 chr9 35409319 35409606 -106861838 + AluSg SINE Alu 1 286 -24 195 284 74 21 chr9 35409910 35410005 -106861439 + MIR3 SINE MIR 7 106 -102 591 276 127 5 chr9 35410041 35410262 -106861182 + MIR SINE MIR 14 261 -1 1133 137 44 0 chr9 35411205 35411388 -106860056 + MER3 DNA MER1_type 12 202 -7 917 251 63 29 chr9 35411832 35412211 -106859233 - L1ME4a LINE L1 -4 6117 5726 2007 128 4 0 chr9 35412351 35412625 -106858819 + AluSx SINE Alu 1 275 -37 225 94 0 0 chr9 35412630 35412662 -106858782 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 402 255 9 0 chr9 35412694 35412800 -106858644 + L1ME LINE L1 5563 5669 -452 2298 86 7 3 chr9 35412821 35413112 -106858332 + AluSp SINE Alu 1 292 -21 2148 116 25 42 chr9 35413181 35413535 -106857909 + MER7A DNA MER2_type 1 346 0 2109 96 40 0 chr9 35413928 35414223 -106857221 + AluSq SINE Alu 1 306 0 337 243 156 52 chr9 35414447 35414546 -106856898 + MIR SINE MIR 56 143 -119 2405 125 17 3 chr9 35414546 35414906 -106856538 + MER47A DNA MER2_type 1 365 -1 337 243 156 52 chr9 35414906 35414979 -106856465 + MIR SINE MIR 143 246 -16 449 246 46 8 chr9 35415367 35415497 -106855947 + L2 LINE L2 3179 3313 0 2389 72 14 0 chr9 35415650 35415941 -106855503 + AluY SINE Alu 1 295 -16 2267 100 10 7 chr9 35416099 35416399 -106855045 - AluSx SINE Alu -11 301 1 1524 189 56 3 chr9 35417214 35417500 -106853944 - AluJb SINE Alu -10 302 2 469 226 126 65 chr9 35417674 35417739 -106853705 - MIR SINE MIR -45 217 157 2180 116 7 3 chr9 35417739 35418042 -106853402 - AluSx SINE Alu -8 304 1 469 226 126 65 chr9 35418042 35418175 -106853269 - MIR SINE MIR -105 157 7 997 168 164 14 chr9 35418222 35418430 -106853014 - MER8 DNA MER2_type 0 239 1 2108 132 4 0 chr9 35418855 35419166 -106852278 + AluSx SINE Alu 1 312 0 1804 143 18 4 chr9 35420065 35420345 -106851099 + AluJb SINE Alu 26 309 -3 397 252 59 8 chr9 35420352 35420471 -106850973 - L2 LINE L2 -14 3299 3175 503 273 56 32 chr9 35420645 35420861 -106850583 - L2 LINE L2 -671 2643 2423 180 152 0 0 chr9 35421745 35421778 -106849666 + T-rich Low_complexity Low_complexity 1 33 0 182 308 43 34 chr9 35421904 35422021 -106849423 + MIR SINE MIR 94 211 -51 2146 107 0 4 chr9 35422060 35422341 -106849103 - AluSx SINE Alu -21 291 12 2318 78 7 13 chr9 35422708 35423014 -106848430 + AluSq SINE Alu 1 304 -9 2129 142 3 0 chr9 35423093 35423403 -106848041 - AluSx SINE Alu -1 311 1 394 42 0 0 chr9 35423416 35423464 -106847980 - MER41A LTR ERV1 -110 444 397 372 283 131 14 chr9 35424769 35424914 -106846530 + MIR SINE MIR 36 197 -65 236 322 141 7 chr9 35425520 35425669 -106845775 + L2 LINE L2 2200 2368 -946 610 306 92 45 chr9 35425708 35426218 -106845226 + L2 LINE L2 1883 2416 -898 229 252 78 78 chr9 35426920 35427035 -106844409 + LTR67 LTR ERVL 428 542 -15 * 286 237 0 0 chr9 35426978 35427037 -106844407 + MLT1K LTR MaLR 515 573 -15 577 214 50 7 chr9 35427552 35427692 -106843752 - MER5B DNA MER1_type -32 146 1 1199 224 105 69 chr9 35427814 35428319 -106843125 - L1M4 LINE L1 -2511 3635 3105 1912 156 13 13 chr9 35428319 35428621 -106842823 - AluJo SINE Alu 0 312 11 1199 224 105 69 chr9 35428621 35428695 -106842749 - L1M4 LINE L1 -3041 3105 3035 2612 129 52 67 chr9 35428697 35428911 -106842533 - L1MC1 LINE L1 0 6333 6117 1950 154 10 0 chr9 35428911 35429204 -106842240 - AluSx SINE Alu -10 302 7 2612 129 52 67 chr9 35429204 35429509 -106841935 - L1MC1 LINE L1 -216 6117 5822 2054 150 0 0 chr9 35429521 35429827 -106841617 - AluJb SINE Alu -6 306 1 641 206 23 15 chr9 35429835 35429966 -106841478 - FLAM_A SINE Alu -5 137 6 246 150 0 0 chr9 35429971 35430011 -106841433 - L1MC1 LINE L1 -508 5825 5786 333 265 0 0 chr9 35430016 35430099 -106841345 - L1M4 LINE L1 -3113 3033 2951 460 167 0 0 chr9 35430102 35430186 -106841258 - L1MC5 LINE L1 -885 7076 6993 815 180 99 0 chr9 35430187 35430359 -106841085 + LTR41 LTR ERVL 2 190 -583 526 169 93 116 chr9 35430570 35430856 -106840588 + LTR41 LTR ERVL 460 523 0 2086 82 11 0 chr9 35431086 35431354 -106840090 + AluSx SINE Alu 1 271 -41 269 82 20 0 chr9 35431470 35431519 -106839925 + (TG)n Simple_repeat Simple_repeat 2 51 0 231 61 0 0 chr9 35431653 35431686 -106839758 + (CAGGG)n Simple_repeat Simple_repeat 3 35 0 198 0 0 0 chr9 35433107 35433129 -106838315 + (A)n Simple_repeat Simple_repeat 1 22 0 1406 161 90 7 chr9 35433135 35433414 -106838030 + AluJb SINE Alu 1 302 -10 304 244 83 113 chr9 35434338 35434604 -106836840 + MER112 DNA MER1_type 1 258 -2 304 188 14 0 chr9 35434651 35434720 -106836724 - MER112 DNA MER1_type -178 82 13 2383 69 7 0 chr9 35434722 35435011 -106836433 + AluY SINE Alu 1 291 -20 675 176 244 19 chr9 35436218 35436423 -106835021 + MIR SINE MIR 12 262 0 314 306 82 34 chr9 35436513 35436660 -106834784 - MIR SINE MIR -40 222 69 255 293 82 58 chr9 35436947 35437155 -106834289 - MIR SINE MIR -49 213 1 24 0 0 0 chr9 35438560 35438584 -106832860 + AT_rich Low_complexity Low_complexity 1 24 0 207 292 26 115 chr9 35438869 35439030 -106832414 + L2 LINE L2 2561 2698 -616 2114 100 41 0 chr9 35439030 35439321 -106832123 - AluSq SINE Alu -10 303 1 207 292 26 115 chr9 35439321 35439385 -106832059 + L2 LINE L2 2698 2766 -548 1672 155 40 25 chr9 35439544 35439821 -106831623 + AluJo SINE Alu 1 281 -31 296 374 0 0 chr9 35439987 35440094 -106831350 + L2 LINE L2 3143 3249 -23 * 436 293 64 71 chr9 35440090 35440356 -106831088 - L3 LINE CR1 -179 1398 1135 1632 180 70 97 chr9 35440530 35440974 -106830470 - MLT1E1 LTR MaLR -2 652 221 586 160 11 11 chr9 35440962 35441056 -106830388 - MLT1E1 LTR MaLR -558 96 3 * 825 264 182 9 chr9 35441109 35441596 -106829848 - L2 LINE L2 -5 3308 2907 1776 172 3 24 chr9 35441596 35441893 -106829551 + AluJo SINE Alu 3 293 -19 825 264 182 9 chr9 35441893 35442128 -106829316 - L2 LINE L2 -406 2907 2378 1958 145 10 0 chr9 35442139 35442450 -106828994 - L1MD3 LINE L1 -9 7986 7673 1505 160 0 13 chr9 35442523 35442761 -106828683 + AluJo SINE Alu 23 257 -55 291 254 118 18 chr9 35442835 35442945 -106828499 - L2 LINE L2 0 3313 3193 338 277 68 40 chr9 35443035 35443164 -106828280 + MIR SINE MIR 31 168 -94 2095 98 40 14 chr9 35443164 35443461 -106827983 - AluSc SINE Alu -4 305 1 338 277 68 40 chr9 35443461 35443508 -106827936 + MIR SINE MIR 168 212 -50 536 128 0 0 chr9 35444785 35444871 -106826573 - L1M2 LINE L1 -610 5681 5596 2178 135 0 0 chr9 35444885 35445182 -106826262 + AluSx SINE Alu 1 297 -15 1376 124 48 28 chr9 35445203 35445453 -106825991 - L1MA4 LINE L1 -3 6297 6043 1804 160 31 0 chr9 35445453 35445747 -106825697 - AluJo SINE Alu -9 303 1 2319 116 0 0 chr9 35445752 35446062 -106825382 - AluSg SINE Alu 0 310 1 22 0 0 0 chr9 35446062 35446084 -106825360 + AT_rich Low_complexity Low_complexity 1 22 0 2272 114 16 0 chr9 35447079 35447386 -106824058 + AluSx SINE Alu 1 312 0 238 250 185 12 chr9 35448163 35448280 -106823164 - L2 LINE L2 -3 3310 3178 525 353 114 12 chr9 35449161 35449645 -106821799 - L2 LINE L2 -647 2667 2135 466 280 164 11 chr9 35450534 35450723 -106820721 - MIR SINE MIR -43 219 2 2018 151 0 22 chr9 35450880 35451199 -106820245 - AluJb SINE Alu 0 312 1 1962 167 0 0 chr9 35451254 35451560 -106819884 + AluJo SINE Alu 1 306 -6 434 305 64 20 chr9 35451664 35451867 -106819577 + MIR SINE MIR 51 262 0 2455 77 0 0 chr9 35452169 35452467 -106818977 + AluY SINE Alu 1 298 -13 1010 138 0 0 chr9 35452738 35452883 -106818561 - FRAM SINE Alu -30 146 2 309 226 0 0 chr9 35452889 35452951 -106818493 + MER5B DNA MER1_type 117 178 0 404 294 191 29 chr9 35453224 35453533 -106817911 + MARNA DNA Mariner 169 527 -59 588 95 0 48 chr9 35454400 35454505 -106816939 - MER50 LTR ERV1 -138 596 497 2333 99 0 0 chr9 35454650 35454943 -106816501 - AluSg SINE Alu -17 293 1 280 254 15 0 chr9 35455023 35455090 -106816354 + L2 LINE L2 3246 3313 0 473 258 67 0 chr9 35455333 35455453 -106815991 + MIR SINE MIR 54 181 -81 2263 119 0 0 chr9 35455681 35455983 -106815461 + AluSx SINE Alu 1 302 -10 267 268 0 28 chr9 35456194 35456265 -106815179 - MIR3 SINE MIR -136 72 4 329 316 6 29 chr9 35456334 35456399 -106815045 + GA-rich Low_complexity Low_complexity 4 69 -104 886 125 0 22 chr9 35456399 35456535 -106814909 + FLAM_C SINE Alu 1 133 0 329 316 6 29 chr9 35456535 35456643 -106814801 + GA-rich Low_complexity Low_complexity 69 173 0 2230 114 3 3 chr9 35457078 35457376 -106814068 - AluSx SINE Alu -14 298 1 660 139 43 0 chr9 35457487 35457602 -106813842 + AluSq/x SINE Alu 2 121 -192 2132 134 0 0 chr9 35457786 35458085 -106813359 + AluSx SINE Alu 1 299 -13 560 265 41 49 chr9 35458091 35458336 -106813108 + L1ME2 LINE L1 5922 6164 0 1297 69 6 0 chr9 35458474 35458633 -106812811 + AluSq SINE Alu 140 299 -14 190 337 134 45 chr9 35458636 35458971 -106812473 - L3 LINE CR1 -44 1533 1169 1613 167 45 21 chr9 35459008 35459295 -106812149 + AluJb SINE Alu 1 294 -18 238 130 130 0 chr9 35459703 35459749 -106811695 - AluSc SINE Alu -6 296 245 419 129 0 0 chr9 35459749 35459811 -106811633 - AluSc SINE Alu -114 195 134 433 328 225 10 chr9 35459825 35460212 -106811232 - L3 LINE CR1 -627 950 481 2037 158 3 6 chr9 35460528 35460839 -106810605 + AluJb SINE Alu 1 310 -2 277 108 0 0 chr9 35460942 35460979 -106810465 + Alu SINE Alu 4 40 -262 550 148 11 0 chr9 35460979 35461067 -106810377 + AluJb SINE Alu 208 296 -16 2259 103 10 0 chr9 35461084 35461375 -106810069 + AluSq SINE Alu 1 294 -19 2098 136 0 0 chr9 35462915 35463201 -106808243 - AluSx SINE Alu -26 286 1 2368 102 3 13 chr9 35463342 35463656 -106807788 - AluSx SINE Alu -1 311 1 6415 197 105 49 chr9 35464887 35464986 -106806458 + L1M4b LINE L1 4 96 -6863 1825 176 3 13 chr9 35464986 35465288 -106806156 + AluJb SINE Alu 1 299 -13 6415 197 105 49 chr9 35465288 35465310 -106806134 + L1M4b LINE L1 96 115 -6844 2222 133 0 3 chr9 35465310 35465610 -106805834 + AluSx SINE Alu 1 299 -13 6415 197 105 49 chr9 35465610 35466865 -106804579 + L1M4b LINE L1 115 1299 -5660 2374 107 0 0 chr9 35466865 35467174 -106804270 + AluSg SINE Alu 1 309 -1 6415 197 105 49 chr9 35467174 35467352 -106804092 + L1M4b LINE L1 1299 1466 -5493 1604 193 10 39 chr9 35467352 35467488 -106803956 + AluJo SINE Alu 1 139 -173 2202 133 0 3 chr9 35467488 35467788 -106803656 + AluSx SINE Alu 1 299 -13 1604 193 10 39 chr9 35467788 35467957 -106803487 + AluJo SINE Alu 139 297 -15 6415 197 105 49 chr9 35467957 35468038 -106803406 + L1M4b LINE L1 1466 1541 -5418 2411 80 10 17 chr9 35468038 35468340 -106803104 + AluY SINE Alu 1 300 -11 6415 197 105 49 chr9 35468340 35468773 -106802671 + L1M4b LINE L1 1541 2185 -4774 2390 69 31 0 chr9 35468774 35469065 -106802379 + AluY SINE Alu 1 300 -11 473 254 136 103 chr9 35469562 35469960 -106801484 + MLT1J LTR MaLR 101 511 0 1085 75 0 8 chr9 35470572 35470706 -106800738 - AluSq/x SINE Alu -179 133 1 186 43 0 0 chr9 35470722 35470745 -106800699 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr9 35470836 35470873 -106800571 + (CA)n Simple_repeat Simple_repeat 1 37 0 2416 86 0 19 chr9 35471496 35471811 -106799633 + AluY SINE Alu 1 309 -2 2188 114 0 13 chr9 35471825 35471961 -106799483 + AluSx SINE Alu 1 137 -175 2266 107 0 20 chr9 35471961 35472259 -106799185 + AluSp SINE Alu 1 292 -21 2188 114 0 13 chr9 35472259 35472429 -106799015 + AluSx SINE Alu 137 303 -9 428 248 74 0 chr9 35473815 35473936 -106797508 - MIR SINE MIR -83 179 50 1516 88 0 0 chr9 35474724 35474905 -106796539 + AluSg SINE Alu 1 181 -129 2209 103 3 38 chr9 35475276 35475596 -106795848 + AluSc SINE Alu 1 309 0 2305 103 3 22 chr9 35475608 35475927 -106795517 + AluSp SINE Alu 1 313 0 2141 95 13 63 chr9 35476401 35476717 -106794727 - AluSq SINE Alu -13 300 1 338 259 0 76 chr9 35476791 35476922 -106794522 - L2 LINE L2 -570 2744 2624 2461 87 0 0 chr9 35477473 35477772 -106793672 - AluSg SINE Alu -11 299 1 1980 105 59 36 chr9 35478106 35478410 -106793034 + AluSq SINE Alu 1 311 -2 258 229 60 24 chr9 35478601 35478684 -106792760 + MIR SINE MIR 36 121 -87 846 81 8 32 chr9 35479237 35479360 -106792084 + FLAM_C SINE Alu 23 142 -1 2367 100 10 3 chr9 35479972 35480282 -106791162 + AluSq SINE Alu 1 312 -1 270 333 75 0 chr9 35480422 35480515 -106790929 - MIR SINE MIR -107 155 56 273 309 13 81 chr9 35481209 35481358 -106790086 + MIR SINE MIR 113 251 -11 190 253 24 60 chr9 35481497 35481580 -106789864 - L2 LINE L2 -38 3275 3196 625 150 67 25 chr9 35481653 35481773 -106789671 - FLAM_C SINE Alu -7 126 2 521 275 67 31 chr9 35485636 35485829 -106785615 - MIR SINE MIR -57 205 6 709 255 114 134 chr9 35490406 35490595 -106780849 + L2 LINE L2 2285 2476 -837 2328 62 24 0 chr9 35490595 35490883 -106780561 + AluY SINE Alu 1 295 -16 709 255 114 134 chr9 35490883 35491174 -106780270 + L2 LINE L2 2476 2771 -542 2053 114 45 10 chr9 35491174 35491464 -106779980 + AluSq SINE Alu 1 300 -13 709 255 114 134 chr9 35491464 35492033 -106779411 + L2 LINE L2 2771 3295 -18 2169 126 13 0 chr9 35492874 35493175 -106778269 + AluSx SINE Alu 1 305 -7 323 365 32 6 chr9 35494398 35494554 -106776890 + L2 LINE L2 2467 2626 -688 315 0 0 0 chr9 35494610 35494645 -106776799 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1883 142 0 0 chr9 35494652 35494927 -106776517 - AluSx SINE Alu -37 275 1 787 247 83 39 chr9 35494927 35495280 -106776164 - L1MC4 LINE L1 -4 8038 7572 329 0 24 0 chr9 35495300 35495341 -106776103 + (TA)n Simple_repeat Simple_repeat 2 43 0 1981 143 7 13 chr9 35495341 35495649 -106775795 - AluSx SINE Alu -6 306 1 711 231 52 9 chr9 35495652 35495864 -106775580 - L1ME3A LINE L1 -5 6165 5945 2442 58 0 10 chr9 35495874 35496195 -106775249 - AluY SINE Alu 0 311 1 324 339 8 0 chr9 35496233 35496363 -106775081 + L2 LINE L2 2654 2784 -530 186 71 0 0 chr9 35496413 35496441 -106775003 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2138 112 0 18 chr9 35496443 35496728 -106774716 - AluSx SINE Alu -32 280 1 1074 189 219 0 chr9 35496757 35496985 -106774459 - AluJb SINE Alu -34 278 1 266 369 67 17 chr9 35496994 35497173 -106774271 + L2 LINE L2 2841 3028 -244 1339 142 49 0 chr9 35497173 35497377 -106774067 - AluJb SINE Alu -98 214 1 2047 148 13 0 chr9 35497428 35497732 -106773712 - AluSx SINE Alu -2 310 3 198 71 0 0 chr9 35497755 35497783 -106773661 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 2103 124 6 13 chr9 35497792 35498106 -106773338 - AluSx SINE Alu 0 312 1 1344 185 0 0 chr9 35498903 35499119 -106772325 + AluJo SINE Alu 22 237 -75 2508 79 0 3 chr9 35499389 35499693 -106771751 - AluSq SINE Alu -10 303 1 1391 172 31 35 chr9 35499895 35500151 -106771293 + AluJo SINE Alu 34 288 -24 2222 107 3 0 chr9 35500235 35500526 -106770918 + AluSx SINE Alu 2 293 -19 843 129 23 23 chr9 35503907 35504039 -106767405 - FLAM_C SINE Alu 0 133 2 2400 89 3 13 chr9 35504427 35504740 -106766704 - AluSx SINE Alu -2 310 1 312 175 0 0 chr9 35507284 35507347 -106764097 + (TG)n Simple_repeat Simple_repeat 1 63 0 29 0 0 0 chr9 35507860 35507889 -106763555 + AT_rich Low_complexity Low_complexity 1 29 0 301 253 121 20 chr9 35508176 35508275 -106763169 + L3 LINE CR1 1344 1452 -125 191 326 91 0 chr9 35508304 35508436 -106763008 + L2 LINE L2 2563 2706 -608 182 281 53 0 chr9 35509083 35509140 -106762304 - MIR SINE MIR -68 140 81 364 260 187 20 chr9 35509504 35509654 -106761790 + MIR SINE MIR 77 251 -11 2578 53 0 3 chr9 35510184 35510483 -106760961 + AluY SINE Alu 1 298 -13 2284 109 0 0 chr9 35510483 35510776 -106760668 + AluSg SINE Alu 1 294 -16 2261 113 0 0 chr9 35511153 35511468 -106759976 - AluSq SINE Alu 0 313 1 208 214 0 0 chr9 35511748 35511790 -106759654 + (GGGTG)n Simple_repeat Simple_repeat 4 45 0 204 242 65 0 chr9 35512264 35512326 -106759118 - MIR SINE MIR -108 100 35 508 241 62 43 chr9 35512443 35512605 -106758839 + LTR33 LTR ERVL 26 190 -331 440 279 93 5 chr9 35512629 35512833 -106758611 + LTR33 LTR ERVL 297 518 -3 519 269 47 27 chr9 35512836 35512985 -106758459 + MIR SINE MIR 107 258 -4 183 250 39 0 chr9 35513437 35513489 -106757955 - L3b LINE CR1 -178 1405 1352 277 288 9 0 chr9 35514595 35514706 -106756738 + (CA)n Simple_repeat Simple_repeat 2 113 0 2195 109 0 14 chr9 35515499 35515793 -106755651 - AluSx SINE Alu -22 290 1 1885 166 16 3 chr9 35515797 35516104 -106755340 - AluJo SINE Alu -1 311 1 1018 127 0 0 chr9 35516139 35516281 -106755163 + AluSq/x SINE Alu 1 142 -171 315 231 13 0 chr9 35516533 35516611 -106754833 + AluS SINE Alu 1 79 -224 1482 170 0 12 chr9 35516611 35516887 -106754557 + AluSx SINE Alu 33 305 0 1485 191 19 44 chr9 35516901 35517221 -106754223 - AluJo SINE Alu 0 312 1 2310 108 0 0 chr9 35517227 35517524 -106753920 - AluSq SINE Alu -16 297 1 538 306 104 20 chr9 35517625 35517972 -106753472 - MLT1K LTR MaLR -2 586 211 189 234 0 94 chr9 35518051 35518115 -106753329 - L2 LINE L2 -93 3220 3163 225 129 0 0 chr9 35518127 35518158 -106753286 - MER45 DNA AcHobo -1499 82 52 392 293 108 6 chr9 35518185 35518352 -106753092 - L2 LINE L2 -245 3027 2844 236 348 0 44 chr9 35518550 35518685 -106752759 + MIR3 SINE MIR 71 199 -9 220 27 54 0 chr9 35518959 35518996 -106752448 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 2135 111 3 7 chr9 35518998 35519317 -106752127 + AluSx SINE Alu 1 318 0 2123 147 0 13 chr9 35519552 35519866 -106751578 + AluJb SINE Alu 1 310 -2 1599 142 76 16 chr9 35519872 35520188 -106751256 + L1MB7 LINE L1 5833 6167 -17 2341 98 0 3 chr9 35520204 35520501 -106750943 - AluSc SINE Alu -13 296 1 2095 128 0 0 chr9 35520580 35520901 -106750543 - AluSx SINE Alu 0 323 3 2397 67 3 0 chr9 35521196 35521515 -106749929 - AluSp SINE Alu 0 320 1 1611 111 5 9 chr9 35521541 35521758 -106749686 + AluJo SINE Alu 84 299 -13 278 191 246 9 chr9 35521819 35521929 -106749515 + L2 LINE L2 3178 3313 0 2363 76 0 7 chr9 35523266 35523554 -106747890 - AluSx SINE Alu -22 290 5 2302 104 3 0 chr9 35523562 35523861 -106747583 - AluSx SINE Alu -12 300 1 362 343 114 0 chr9 35523956 35524096 -106747348 + L2 LINE L2 3117 3272 0 278 246 87 0 chr9 35524088 35524157 -106747287 - MIR SINE MIR -2 260 186 * 2555 64 0 6 chr9 35524428 35524741 -106746703 + AluY SINE Alu 1 311 0 183 100 0 0 chr9 35524837 35524867 -106746577 + (T)n Simple_repeat Simple_repeat 1 30 0 226 209 0 0 chr9 35524867 35524910 -106746534 - MER58A DNA MER1_type -23 84 42 7076 119 26 67 chr9 35525070 35526434 -106745010 - SVA Other Other 0 1386 79 342 331 42 14 chr9 35526493 35526635 -106744809 + L1ME2 LINE L1 5594 5739 -382 27 29 0 0 chr9 35526638 35526672 -106744772 + AT_rich Low_complexity Low_complexity 1 34 0 541 265 41 49 chr9 35527116 35527361 -106744083 + L1ME2 LINE L1 5922 6164 0 1289 69 6 0 chr9 35527499 35527658 -106743786 + AluSq SINE Alu 140 299 -14 251 330 138 42 chr9 35527661 35528015 -106743429 - L3 LINE CR1 -44 1533 1146 1611 170 45 21 chr9 35528033 35528321 -106743123 + AluJb SINE Alu 1 295 -17 236 130 130 0 chr9 35528729 35528775 -106742669 - AluSc SINE Alu -6 296 245 449 129 0 0 chr9 35528775 35528837 -106742607 - AluSc SINE Alu -114 195 134 488 328 225 10 chr9 35528851 35529238 -106742206 - L3 LINE CR1 -627 950 481 2176 154 0 0 chr9 35529554 35529866 -106741578 + AluJb SINE Alu 1 312 0 271 108 0 0 chr9 35529969 35530006 -106741438 + Alu SINE Alu 4 40 -262 595 146 11 0 chr9 35530006 35530095 -106741349 + AluJb SINE Alu 208 297 -15 2406 97 10 0 chr9 35530112 35530420 -106741024 + AluSq SINE Alu 1 311 -2 2083 136 0 0 chr9 35531942 35532228 -106739216 - AluSx SINE Alu -26 286 1 2363 102 3 13 chr9 35532369 35532683 -106738761 - AluSx SINE Alu -1 311 1 6305 204 110 50 chr9 35533913 35534012 -106737432 + L1M4b LINE L1 4 96 -6863 1818 176 3 13 chr9 35534012 35534314 -106737130 + AluJb SINE Alu 1 299 -13 6305 204 110 50 chr9 35534314 35534336 -106737108 + L1M4b LINE L1 96 115 -6844 2216 133 0 3 chr9 35534336 35534636 -106736808 + AluSx SINE Alu 1 299 -13 6305 204 110 50 chr9 35534636 35535891 -106735553 + L1M4b LINE L1 115 1293 -5666 2370 107 0 0 chr9 35535891 35536200 -106735244 + AluSg SINE Alu 1 309 -1 6305 204 110 50 chr9 35536200 35536379 -106735065 + L1M4b LINE L1 1293 1460 -5499 1599 193 10 39 chr9 35536379 35536515 -106734929 + AluJo SINE Alu 1 139 -173 2279 127 0 0 chr9 35536515 35536814 -106734630 + AluSx SINE Alu 1 299 -13 1599 193 10 39 chr9 35536814 35536983 -106734461 + AluJo SINE Alu 139 297 -15 6305 204 110 50 chr9 35536983 35537064 -106734380 + L1M4b LINE L1 1460 1535 -5424 2402 80 10 17 chr9 35537064 35537366 -106734078 + AluY SINE Alu 1 300 -11 6305 204 110 50 chr9 35537366 35537800 -106733644 + L1M4b LINE L1 1535 1942 -5017 2551 56 7 3 chr9 35537800 35538106 -106733338 + AluY SINE Alu 1 307 -4 6305 204 110 50 chr9 35538106 35538380 -106733064 + L1M4b LINE L1 1942 2502 -4457 583 276 83 45 chr9 35538465 35538547 -106732897 + L1M4b LINE L1 2476 2553 -4585 2233 146 0 0 chr9 35538547 35538855 -106732589 + AluSx SINE Alu 1 308 -4 1546 214 3 7 chr9 35538855 35539143 -106732301 + AluJo SINE Alu 1 288 -24 583 276 83 45 chr9 35539143 35539574 -106731870 + L1M4b LINE L1 2552 3010 -4128 845 194 0 0 chr9 35539605 35539739 -106731705 - AluJo SINE Alu -178 134 1 410 247 14 14 chr9 35539739 35539795 -106731649 + L1M4b LINE L1 2988 3043 -3914 2348 74 0 7 chr9 35539795 35540079 -106731365 - AluSg SINE Alu -28 282 1 410 247 14 14 chr9 35540079 35540168 -106731276 + L1M4b LINE L1 3042 3133 -3824 1726 170 6 49 chr9 35540415 35540739 -106730705 - AluJb SINE Alu -2 310 1 1453 217 50 110 chr9 35541397 35541978 -106729466 - MER77 LTR ERV1 -4 601 56 2194 144 0 0 chr9 35542059 35542371 -106729073 - AluSx SINE Alu 0 312 1 1144 89 0 0 chr9 35542371 35542506 -106728938 - AluSq/x SINE Alu -178 135 1 2259 83 48 0 chr9 35543309 35543598 -106727846 + AluY SINE Alu 1 303 -8 316 153 137 48 chr9 35544911 35545035 -106726409 + L1ME2 LINE L1 5991 6125 -39 348 304 65 24 chr9 35545089 35545257 -106726187 + L1MC4 LINE L1 7833 8007 -35 2292 110 3 0 chr9 35545257 35545557 -106725887 - AluSx SINE Alu -11 301 1 435 298 35 0 chr9 35545679 35545820 -106725624 - MLT1L LTR MaLR 0 615 470 437 275 135 10 chr9 35546004 35546197 -106725247 - MLT1L LTR MaLR -398 217 1 2324 114 0 0 chr9 35546277 35546576 -106724868 + AluSx SINE Alu 3 301 -11 1771 194 7 7 chr9 35546585 35546894 -106724550 + AluJo SINE Alu 1 309 -3 301 272 130 27 chr9 35547073 35547257 -106724187 - L1MC4a LINE L1 -1898 5910 5708 423 261 37 43 chr9 35547298 35547486 -106723958 - L1MC5 LINE L1 -50 7911 7725 374 102 286 0 chr9 35547497 35547595 -106723849 - L1MB5 LINE L1 0 6174 6049 2498 92 0 6 chr9 35547630 35547945 -106723499 - AluSq SINE Alu 0 313 1 26 0 0 0 chr9 35547945 35547971 -106723473 + AT_rich Low_complexity Low_complexity 1 26 0 575 165 0 0 chr9 35547971 35548062 -106723382 - FLAM_C SINE Alu -23 120 30 2971 158 44 31 chr9 35548064 35548624 -106722820 - L1MB5 LINE L1 -115 6059 5489 2371 88 0 0 chr9 35548624 35548921 -106722523 - AluSg SINE Alu -8 302 6 2971 158 44 31 chr9 35548921 35548976 -106722468 - L1MB5 LINE L1 -685 5489 5436 824 189 34 0 chr9 35549026 35549174 -106722270 - AluJb SINE Alu -20 292 140 22 70 0 0 chr9 35549179 35549222 -106722222 + AT_rich Low_complexity Low_complexity 1 43 0 1925 61 4 4 chr9 35549232 35549462 -106721982 + AluSq SINE Alu 1 230 -83 568 150 0 0 chr9 35549465 35549545 -106721899 - AluJo/FLAM SINE Alu -188 124 45 1055 169 36 1 chr9 35549573 35549874 -106721570 - MER2 DNA MER2_type 0 345 8 827 230 7 0 chr9 35549993 35550141 -106721303 + FRAM SINE Alu 1 146 -30 261 0 0 0 chr9 35550144 35550173 -106721271 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2471 98 0 0 chr9 35550179 35550485 -106720959 + AluSx SINE Alu 1 306 -6 2155 131 3 0 chr9 35550487 35550792 -106720652 + AluSx SINE Alu 2 307 -5 40 21 0 0 chr9 35551413 35551460 -106719984 + AT_rich Low_complexity Low_complexity 1 47 0 220 165 35 71 chr9 35551524 35551587 -106719857 + (TA)n Simple_repeat Simple_repeat 1 65 -17 2096 128 57 25 chr9 35551587 35551940 -106719504 - THE1B LTR MaLR 0 364 1 12292 88 5 0 chr9 35551940 35553513 -106717931 - THE1B-int LTR MaLR 0 1580 1 2225 123 47 33 chr9 35553513 35553872 -106717572 - THE1B LTR MaLR 0 364 1 220 165 35 71 chr9 35553872 35553891 -106717553 + (TA)n Simple_repeat Simple_repeat 62 82 0 29 0 0 0 chr9 35553951 35553980 -106717464 + AT_rich Low_complexity Low_complexity 1 29 0 822 157 21 14 chr9 35554061 35554201 -106717243 + AluJb SINE Alu 1 141 -171 2083 125 4 0 chr9 35554247 35554528 -106716916 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr9 35554541 35554564 -106716880 + (CA)n Simple_repeat Simple_repeat 1 23 0 29 0 0 0 chr9 35554568 35554597 -106716847 + AT_rich Low_complexity Low_complexity 1 29 0 2313 76 0 4 chr9 35554602 35554878 -106716566 + AluY SINE Alu 13 287 -24 598 202 46 35 chr9 35554892 35555065 -106716379 - L1MC5 LINE L1 -56 7905 7731 2049 198 165 16 chr9 35555577 35556260 -106715184 - Charlie1 DNA MER1_type 0 2761 1977 25 31 0 0 chr9 35556307 35556339 -106715105 + AT_rich Low_complexity Low_complexity 1 32 0 304 282 64 44 chr9 35556933 35556995 -106714449 - L1ME4a LINE L1 -2 6119 6060 2355 86 0 3 chr9 35556995 35557286 -106714158 + AluSc SINE Alu 1 290 -19 2403 119 0 0 chr9 35557290 35557602 -106713842 + AluSx SINE Alu 1 312 0 2369 109 0 0 chr9 35557605 35557907 -106713537 + AluSx SINE Alu 1 302 -10 304 282 64 44 chr9 35557907 35558243 -106713201 - L1ME4a LINE L1 -64 6057 5704 751 237 50 5 chr9 35559657 35559876 -106711568 - L1ME1 LINE L1 -2 6164 5936 5209 58 24 38 chr9 35559900 35560481 -106710963 + L1PB1 LINE L1 5444 6015 -136 2059 105 20 30 chr9 35560481 35560777 -106710667 + AluSg SINE Alu 3 295 -15 5209 58 24 38 chr9 35560777 35560913 -106710531 + L1PB1 LINE L1 6015 6151 0 1174 169 24 0 chr9 35560923 35561136 -106710308 - Tigger1 DNA MER2_type -2187 231 14 427 252 63 49 chr9 35561545 35561688 -106709756 - L2 LINE L2 -5 3308 3164 1358 164 9 14 chr9 35562222 35562433 -106709011 + AluJo SINE Alu 85 296 -16 2411 109 0 0 chr9 35562433 35562745 -106708699 + AluSx SINE Alu 1 312 0 789 198 0 0 chr9 35563121 35563242 -106708202 + FLAM_A SINE Alu 1 121 -12 2073 121 16 20 chr9 35563275 35563580 -106707864 + AluSx SINE Alu 1 304 -8 1571 184 60 11 chr9 35563588 35563871 -106707573 + AluJb SINE Alu 2 298 -14 303 301 54 0 chr9 35564471 35564564 -106706880 - L2 LINE L2 -1 3271 3174 596 48 60 0 chr9 35565201 35565285 -106706159 - HY3 scRNA scRNA -1 100 12 529 132 245 0 chr9 35565350 35565456 -106705988 - FLAM_C SINE Alu 0 133 2 180 354 80 9 chr9 35565923 35566036 -106705408 - L2 LINE L2 -24 3289 3169 2348 111 0 3 chr9 35566093 35566399 -106705045 - AluSq SINE Alu -8 305 1 1899 240 99 59 chr9 35567613 35568047 -106703397 - L1ME3A LINE L1 -3 6167 5752 2339 115 0 0 chr9 35568047 35568352 -106703092 - AluSq SINE Alu -8 305 1 1899 240 99 59 chr9 35568352 35569187 -106702257 - L1ME3A LINE L1 -418 5752 4860 1236 166 9 23 chr9 35569200 35569417 -106702027 + AluJb SINE Alu 87 300 -12 2090 92 29 57 chr9 35569419 35569733 -106701711 + AluY SINE Alu 1 305 -6 815 248 110 70 chr9 35569748 35569932 -106701512 - L1ME3A LINE L1 -1301 4845 4670 1749 178 3 44 chr9 35569932 35570252 -106701192 - AluJo SINE Alu -5 307 1 815 248 110 70 chr9 35570252 35570523 -106700921 - L1ME3A LINE L1 -1476 4670 4372 2340 100 0 0 chr9 35570540 35570831 -106700613 - AluY SINE Alu -20 291 1 35 0 0 0 chr9 35570834 35570869 -106700575 + AT_rich Low_complexity Low_complexity 1 35 0 1436 167 23 109 chr9 35571057 35571405 -106700039 - AluYb8 SINE Alu 0 318 1 647 210 44 151 chr9 35571414 35571723 -106699721 - L1ME3A LINE L1 -1784 4362 4104 2333 101 0 0 chr9 35571723 35572020 -106699424 + AluSx SINE Alu 1 297 -15 647 210 44 151 chr9 35572020 35572115 -106699329 - L1ME3A LINE L1 -2042 4104 4001 280 247 62 0 chr9 35572192 35572289 -106699155 + L1MC4 LINE L1 7940 8042 0 910 230 15 49 chr9 35572605 35572870 -106698574 + MIR SINE MIR 5 260 -2 198 275 0 0 chr9 35573012 35573081 -106698363 + (TA)n Simple_repeat Simple_repeat 1 69 0 237 216 115 101 chr9 35573105 35573253 -106698191 + Charlie8 DNA MER1_type 24 173 -2244 379 326 81 27 chr9 35573483 35573704 -106697740 + L1ME4a LINE L1 5659 5891 -230 718 76 98 8 chr9 35573721 35573853 -106697591 - L1MA8 LINE L1 -2 6289 6146 2265 82 0 0 chr9 35573897 35574167 -106697277 + AluSq SINE Alu 1 270 -43 227 135 0 0 chr9 35574167 35574204 -106697240 + AluSq SINE Alu 253 289 -14 3923 138 30 44 chr9 35574237 35574248 -106697196 + L1MA6 LINE L1 5510 5520 -780 1886 162 10 3 chr9 35574248 35574557 -106696887 + AluJb SINE Alu 1 311 -1 3923 138 30 44 chr9 35574557 35575099 -106696345 + L1MA6 LINE L1 5520 6051 -249 2535 84 0 0 chr9 35575099 35575409 -106696035 - AluSp SINE Alu -3 310 1 3923 138 30 44 chr9 35575409 35575656 -106695788 + L1MA6 LINE L1 6051 6300 0 336 24 0 0 chr9 35575669 35575710 -106695734 + (TTA)n Simple_repeat Simple_repeat 1 41 0 2041 136 4 0 chr9 35575710 35575989 -106695455 - AluSx SINE Alu -32 280 1 182 345 36 0 chr9 35576766 35576821 -106694623 + L3b LINE CR1 1509 1565 -18 2143 126 0 0 chr9 35577397 35577706 -106693738 + AluSq SINE Alu 1 309 0 1957 160 3 13 chr9 35577730 35578042 -106693402 + AluJb SINE Alu 2 310 -2 226 315 79 11 chr9 35578129 35578218 -106693226 + L3 LINE CR1 1226 1320 -257 2268 87 0 10 chr9 35580357 35580655 -106690789 + AluSx SINE Alu 1 295 -17 2584 63 7 0 chr9 35581465 35581768 -106689676 - AluY SINE Alu -6 305 1 322 213 88 110 chr9 35581802 35581938 -106689506 - L1MC5 LINE L1 -31 7930 7798 329 281 29 29 chr9 35581944 35582083 -106689361 + Tigger8 DNA MER2_type 401 539 -127 21 0 0 0 chr9 35582184 35582205 -106689239 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 35583536 35583558 -106687886 + AT_rich Low_complexity Low_complexity 1 22 0 216 267 31 27 chr9 35583868 35583984 -106687460 + MIR SINE MIR 38 207 -55 242 300 64 91 chr9 35584542 35584607 -106686837 - L2 LINE L2 -557 2757 2692 1432 213 52 9 chr9 35584607 35584931 -106686513 - MER58B DNA MER1_type 0 341 4 242 300 64 91 chr9 35584931 35585085 -106686359 - L2 LINE L2 -622 2692 2544 203 152 0 0 chr9 35585583 35585616 -106685828 + GA-rich Low_complexity Low_complexity 2 34 0 185 235 278 17 chr9 35586192 35586307 -106685137 + MIR3 SINE MIR 1 145 -63 201 273 0 0 chr9 35586626 35586670 -106684774 - MIR SINE MIR 0 262 219 784 159 45 70 chr9 35586708 35586865 -106684579 + FRAM SINE Alu 6 158 -18 2009 136 10 7 chr9 35586865 35587159 -106684285 + AluJo SINE Alu 1 295 -17 505 238 19 9 chr9 35587160 35587286 -106684158 - MIR SINE MIR -62 146 45 1787 255 146 39 chr9 35587719 35587956 -106683488 - L2 LINE L2 -340 2974 2764 2025 122 7 0 chr9 35587956 35588244 -106683200 - AluSx SINE Alu -22 290 1 1787 255 146 39 chr9 35588244 35588802 -106682642 - L2 LINE L2 -550 2764 2094 2555 61 0 0 chr9 35589063 35589360 -106682084 - AluY SINE Alu -14 297 1 1368 169 111 69 chr9 35589939 35590371 -106681073 - LTR7 LTR ERV1 0 450 1 320 209 13 3 chr9 35591158 35591236 -106680208 - MIR SINE MIR -43 165 88 2666 20 7 3 chr9 35591256 35591556 -106679888 - AluY SINE Alu -10 301 1 2381 108 0 0 chr9 35591670 35591977 -106679467 + AluSx SINE Alu 1 307 -5 384 238 0 0 chr9 35592238 35592318 -106679126 - MIR SINE MIR -160 102 23 315 322 68 0 chr9 35592737 35592855 -106678589 - MIR3 SINE MIR -23 185 60 228 315 0 0 chr9 35592939 35592993 -106678451 + (TG)n Simple_repeat Simple_repeat 1 54 0 299 130 19 0 chr9 35593056 35593110 -106678334 + CT-rich Low_complexity Low_complexity 4 58 0 832 228 301 8 chr9 35593209 35593591 -106677853 + L2 LINE L2 2819 3312 -1 1384 381 0 26 chr9 35594213 35594523 -106676921 + AluSx SINE Alu 1 302 -10 2110 120 36 0 chr9 35594523 35594857 -106676587 + L1MB3 LINE L1 5665 6010 -173 349 70 53 18 chr9 35594857 35594914 -106676530 + MER57A LTR ERV1 7 65 -338 2280 108 3 0 chr9 35594915 35595210 -106676234 + AluSx SINE Alu 1 296 -16 239 0 32 0 chr9 35595214 35595245 -106676199 + (TA)n Simple_repeat Simple_repeat 2 33 0 986 158 12 12 chr9 35595499 35595664 -106675780 - AluSg/x SINE Alu -12 298 134 2498 80 0 0 chr9 35595665 35595964 -106675480 - AluSc SINE Alu -10 299 1 311 298 7 21 chr9 35595979 35596120 -106675324 - L1ME3 LINE L1 -295 5867 5729 758 263 11 0 chr9 35596252 35596427 -106675017 - MIR SINE MIR -4 258 82 413 289 95 28 chr9 35596450 35596703 -106674741 + L2 LINE L2 2318 2587 -727 341 310 83 39 chr9 35596924 35597153 -106674291 + L2 LINE L2 3025 3263 -9 507 182 94 39 chr9 35597457 35597659 -106673785 + MER106B DNA MER1_type 30 1059 0 414 264 68 27 chr9 35599768 35599916 -106671528 - MIR SINE MIR -70 192 39 768 243 78 10 chr9 35601686 35601892 -106669552 - MIR SINE MIR 0 262 43 1765 161 0 56 chr9 35601963 35602135 -106669309 - AluJb SINE Alu -7 305 158 2302 107 0 3 chr9 35602135 35602433 -106669011 - AluSx SINE Alu -11 301 5 1765 161 0 56 chr9 35602433 35602583 -106668861 - AluJb SINE Alu -154 158 1 687 154 112 0 chr9 35602583 35602752 -106668692 + Charlie5 DNA MER1_type 2398 2585 -27 222 274 161 45 chr9 35602818 35602863 -106668581 - L2 LINE L2 -1451 1863 1825 2308 103 30 0 chr9 35602863 35603164 -106668280 + AluSx SINE Alu 1 310 -2 222 274 161 45 chr9 35603164 35603497 -106667947 - L2 LINE L2 -1489 1825 1441 2277 94 13 3 chr9 35603932 35604231 -106667213 + AluSg SINE Alu 1 302 -8 360 202 115 49 chr9 35604362 35604545 -106666899 + MER102b DNA MER1_type 147 341 0 243 276 126 0 chr9 35604706 35604793 -106666651 - L3 LINE CR1 -550 1027 930 334 305 42 0 chr9 35604907 35605002 -106666442 - MIR SINE MIR -56 206 108 2057 120 50 0 chr9 35605134 35605417 -106666027 + AluSx SINE Alu 1 297 -15 774 251 62 19 chr9 35605417 35605628 -106665816 + MIR SINE MIR 29 248 -14 2038 146 0 0 chr9 35606048 35606342 -106665102 + AluSx SINE Alu 1 294 -18 257 300 113 0 chr9 35606353 35606433 -106665011 - MIR SINE MIR -149 113 25 287 360 18 0 chr9 35606447 35606558 -106664886 - MIR SINE MIR -65 143 31 746 283 261 11 chr9 35606794 35607518 -106663926 + L2 LINE L2 1842 2746 -568 2545 94 0 0 chr9 35607589 35607898 -106663546 - AluSq SINE Alu -2 311 3 186 133 0 0 chr9 35608671 35608701 -106662743 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 447 265 51 0 chr9 35608949 35609047 -106662397 + L2 LINE L2 3210 3312 -1 202 260 0 0 chr9 35609057 35609107 -106662337 + L2 LINE L2 3184 3233 -39 2401 88 3 3 chr9 35609258 35609563 -106661881 + AluSp SINE Alu 1 305 -8 219 326 156 39 chr9 35609675 35609922 -106661522 + L2 LINE L2 2899 3202 -111 1934 147 20 17 chr9 35609922 35610222 -106661222 + AluJb SINE Alu 1 301 -11 219 326 156 39 chr9 35610222 35610333 -106661111 + L2 LINE L2 3202 3299 -14 187 312 210 40 chr9 35611288 35611958 -106659486 - L2 LINE L2 -391 2923 2140 1083 147 0 23 chr9 35612063 35612240 -106659204 - AluJb SINE Alu -2 310 138 270 336 23 0 chr9 35612258 35612389 -106659055 + (CCAA)n Simple_repeat Simple_repeat 3 136 0 235 261 268 80 chr9 35612389 35612415 -106659029 - L2 LINE L2 0 3272 3252 1965 143 0 20 chr9 35612415 35612715 -106658729 + AluSx SINE Alu 1 294 -18 235 261 268 80 chr9 35612715 35612964 -106658480 - L2 LINE L2 -20 3252 2945 339 296 89 83 chr9 35613277 35613617 -106657827 - L1MEd LINE L1 -4971 1148 797 204 97 0 0 chr9 35613722 35613753 -106657691 + (CA)n Simple_repeat Simple_repeat 2 32 0 670 118 0 0 chr9 35613768 35613861 -106657583 - AluS SINE Alu -218 94 2 408 94 62 0 chr9 35613861 35613925 -106657519 + MSTB LTR MaLR 359 426 0 2879 210 63 20 chr9 35613927 35614756 -106656688 + L1MC4a LINE L1 6944 7807 -1 518 148 61 31 chr9 35614775 35614919 -106656525 + L1MA9 LINE L1 6158 6290 -1 23 54 0 0 chr9 35614921 35614958 -106656486 + AT_rich Low_complexity Low_complexity 1 37 0 309 283 85 9 chr9 35615102 35615208 -106656236 + MIR3 SINE MIR 95 208 0 2477 103 0 0 chr9 35615376 35615688 -106655756 - AluSx SINE Alu 0 312 1 2097 116 0 30 chr9 35616810 35617111 -106654333 - AluJo SINE Alu -20 292 1 2466 150 46 9 chr9 35617116 35617569 -106653875 - L1MB3 LINE L1 0 6183 5714 1284 154 50 141 chr9 35618230 35618627 -106652817 + MLT1A1 LTR MaLR 1 361 -4 197 368 141 37 chr9 35618749 35618991 -106652453 - L2 LINE L2 -20 3252 2986 * 290 262 12 60 chr9 35618983 35619067 -106652377 + L2 LINE L2 3193 3272 0 590 200 138 31 chr9 35619182 35619342 -106652102 + MER20 DNA MER1_type 40 216 -3 221 275 14 29 chr9 35619445 35619514 -106651930 - L2 LINE L2 0 3313 3246 1823 163 14 0 chr9 35619514 35619809 -106651635 - AluJo SINE Alu -13 299 1 2124 110 62 0 chr9 35620135 35620426 -106651018 + AluSp SINE Alu 1 309 -4 1173 130 25 0 chr9 35621219 35621381 -106650063 - AluSg/x SINE Alu -18 292 127 319 322 137 13 chr9 35621506 35621733 -106649711 - L2 LINE L2 -814 2500 2246 520 259 146 69 chr9 35621776 35622105 -106649339 - L2 LINE L2 -74 3239 2857 2053 114 0 81 chr9 35622105 35622437 -106649007 + AluSx SINE Alu 1 305 -7 520 259 146 69 chr9 35622437 35622536 -106648908 - L2 LINE L2 -456 2857 2767 255 125 0 0 chr9 35623281 35623321 -106648123 + (CA)n Simple_repeat Simple_repeat 1 40 0 294 306 45 8 chr9 35623748 35623882 -106647562 - MIR3 SINE MIR -69 139 1 2177 102 14 7 chr9 35625332 35625625 -106645819 - AluSx SINE Alu -17 295 1 233 294 28 46 chr9 35626178 35626287 -106645157 - L2 LINE L2 -493 2821 2715 312 287 183 60 chr9 35626928 35627294 -106644150 + HAL1 LINE L1 882 1292 -1215 180 0 0 0 chr9 35627442 35627462 -106643982 + (TA)n Simple_repeat Simple_repeat 1 20 0 1354 167 5 14 chr9 35627533 35627755 -106643689 - AluJo SINE Alu -92 220 1 4570 175 14 3 chr9 35627755 35628645 -106642799 - L1 LINE L1 -815 5331 4433 1292 113 15 49 chr9 35628645 35628678 -106642766 + AluY SINE Alu 101 134 -177 2606 61 0 6 chr9 35628678 35628989 -106642455 + AluY SINE Alu 1 309 -2 1292 113 15 49 chr9 35628989 35629159 -106642285 + AluY SINE Alu 134 297 -14 2103 112 0 33 chr9 35629300 35629603 -106641841 + AluSc SINE Alu 1 293 -16 2224 94 0 17 chr9 35629609 35629931 -106641513 + AluSx SINE Alu 3 319 0 715 196 49 98 chr9 35629980 35630184 -106641260 - AluJo SINE Alu -117 195 2 446 97 43 11 chr9 35630186 35630279 -106641165 - LTR23 LTR ERV1 -132 305 210 1362 112 0 5 chr9 35630284 35630472 -106640972 - AluSg/x SINE Alu -6 304 118 216 0 0 0 chr9 35630666 35630690 -106640754 + (CA)n Simple_repeat Simple_repeat 2 25 0 1806 173 0 26 chr9 35631721 35632027 -106639417 - AluJo SINE Alu -14 298 1 186 43 0 0 chr9 35632031 35632054 -106639390 + (TG)n Simple_repeat Simple_repeat 1 23 0 2203 107 10 0 chr9 35632122 35632413 -106639031 - AluSg SINE Alu -16 294 1 1409 161 44 4 chr9 35632415 35632689 -106638755 - L1MB2 LINE L1 -42 6129 5845 1196 136 0 23 chr9 35632701 35632878 -106638566 - AluSq SINE Alu -10 303 131 956 158 12 0 chr9 35632878 35633043 -106638401 - L1MB2 LINE L1 -348 5823 5657 1459 86 68 5 chr9 35633045 35633265 -106638179 - L1PA14 LINE L1 0 6161 5928 780 156 78 90 chr9 35633289 35633397 -106638047 + ORSL DNA AcHobo 23 131 -144 2020 154 3 0 chr9 35633397 35633695 -106637749 - AluSq SINE Alu -14 299 1 780 156 78 90 chr9 35633695 35633842 -106637602 + ORSL DNA AcHobo 131 275 0 2259 173 71 19 chr9 35634176 35634638 -106636806 + MER66B LTR ERV1 1 486 0 1759 99 0 0 chr9 35634666 35634889 -106636555 - AluSg/x SINE Alu -14 296 74 327 293 57 19 chr9 35634902 35635008 -106636436 - L1MC4 LINE L1 -138 7904 7795 410 225 105 43 chr9 35635096 35635305 -106636139 - L1MC5 LINE L1 -386 7575 7354 1668 171 68 10 chr9 35635314 35635449 -106635995 + AluJb SINE Alu 1 127 -185 2522 62 0 0 chr9 35635449 35635741 -106635703 + AluY SINE Alu 2 293 -18 1668 171 68 10 chr9 35635741 35635898 -106635546 + AluJb SINE Alu 127 310 -2 2195 135 0 0 chr9 35635931 35636227 -106635217 + AluSx SINE Alu 1 296 -16 2279 110 0 13 chr9 35636229 35636539 -106634905 + AluSx SINE Alu 1 306 -6 2304 81 0 3 chr9 35636558 35636880 -106634564 - AluY SINE Alu 0 321 1 1766 130 72 0 chr9 35636884 35637161 -106634283 - AluJo SINE Alu -15 297 1 310 350 24 0 chr9 35637222 35637345 -106634099 - L1MC4 LINE L1 -593 7449 7324 473 281 114 19 chr9 35637690 35637900 -106633544 + MIR SINE MIR 13 242 -20 181 264 42 56 chr9 35638331 35638403 -106633041 + L2 LINE L2 3197 3267 -5 687 180 16 8 chr9 35638699 35638827 -106632617 - AluJo SINE Alu -171 141 13 1978 135 0 10 chr9 35638859 35639148 -106632296 - AluSx SINE Alu -26 286 1 213 60 20 40 chr9 35639328 35639378 -106632066 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 499 286 160 63 chr9 35639577 35640245 -106631199 + L2 LINE L2 2538 3271 -1 1837 125 114 0 chr9 35640270 35640550 -106630894 - AluSq SINE Alu 0 313 2 394 137 39 108 chr9 35640749 35640811 -106630633 - MER97a DNA MER1_type? -722 172 118 2136 41 107 7 chr9 35640811 35641082 -106630362 - AluY SINE Alu -13 298 1 394 137 39 108 chr9 35641082 35641121 -106630323 - MER97a DNA MER1_type? -776 118 78 263 149 164 30 chr9 35641126 35641193 -106630251 + U2 snRNA snRNA 1 76 -112 * 299 196 11 54 chr9 35641157 35641249 -106630195 - MER97b DNA MER1_type? -963 90 3 214 331 107 41 chr9 35641499 35641620 -106629824 + MIR3 SINE MIR 48 176 -32 927 118 0 0 chr9 35642051 35642170 -106629274 - AluSq/x SINE Alu -194 119 1 215 188 350 12 chr9 35643729 35643809 -106627635 + MIR SINE MIR 21 127 -81 181 254 175 71 chr9 35644887 35645013 -106626431 - L2 LINE L2 -5 3267 3129 463 281 114 19 chr9 35645390 35645600 -106625844 - MIR SINE MIR -20 242 13 256 130 19 19 chr9 35646129 35646183 -106625261 + Alu SINE Alu 1 54 -247 934 173 6 46 chr9 35646480 35646653 -106624791 + FRAM SINE Alu 1 166 0 266 242 45 15 chr9 35647514 35647580 -106623864 - L2 LINE L2 -6 3307 3240 301 324 97 14 chr9 35647848 35647993 -106623451 - MIR SINE MIR 0 262 106 263 276 19 67 chr9 35648100 35648205 -106623239 + MIR SINE MIR 68 167 -95 537 235 131 7 chr9 35648340 35648493 -106622951 + MIR SINE MIR 90 261 -1 21 0 0 0 chr9 35648642 35648663 -106622781 + AT_rich Low_complexity Low_complexity 1 21 0 1939 111 61 14 chr9 35649154 35649433 -106622011 + AluSg SINE Alu 2 293 -17 398 230 47 37 chr9 35650221 35650361 -106621083 - L1MC4 LINE L1 -1339 6703 6610 346 247 90 17 chr9 35650249 35650393 -106621051 + L1MCa LINE L1 1981 2110 -4316 * 2196 117 3 3 chr9 35650754 35651052 -106620392 + AluSx SINE Alu 1 298 -14 304 183 0 14 chr9 35651053 35651124 -106620320 + MER53 DNA DNA 120 189 0 2610 68 0 0 chr9 35651165 35651472 -106619972 + AluY SINE Alu 1 307 -4 2306 121 0 3 chr9 35652003 35652316 -106619128 + AluSq SINE Alu 1 312 -1 1990 134 7 3 chr9 35652660 35652978 -106618466 + AluSx SINE Alu 1 319 0 190 250 18 54 chr9 35653055 35653111 -106618333 - MIR3 SINE MIR -11 197 144 1779 125 0 0 chr9 35653286 35653534 -106617910 + AluSx SINE Alu 40 287 -25 202 232 18 54 chr9 35653625 35653681 -106617763 - MIR3 SINE MIR -11 197 144 1920 142 0 10 chr9 35653814 35654109 -106617335 - AluSx SINE Alu -20 292 1 216 0 0 0 chr9 35654275 35654299 -106617145 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2080 154 0 0 chr9 35654329 35654634 -106616810 - AluSx SINE Alu -7 305 1 1161 127 0 0 chr9 35654674 35654831 -106616613 + FRAM SINE Alu 5 161 -15 2255 68 3 10 chr9 35655508 35655800 -106615644 - AluSc SINE Alu -19 290 1 459 223 117 0 chr9 35656127 35656221 -106615223 - L2 LINE L2 -10 3303 3199 21 0 0 0 chr9 35656291 35656312 -106615132 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 35656919 35656940 -106614504 + AT_rich Low_complexity Low_complexity 1 21 0 2321 101 0 3 chr9 35657259 35657624 -106613820 + AluSg SINE Alu 1 364 0 1635 192 3 31 chr9 35657644 35657962 -106613482 + AluJo SINE Alu 1 309 -3 1615 205 0 7 chr9 35658024 35658321 -106613123 + AluJb SINE Alu 1 295 -17 965 227 14 18 chr9 35658639 35658859 -106612585 - MER20 DNA MER1_type 0 219 1 2368 74 7 7 chr9 35659266 35659575 -106611869 + AluSc SINE Alu 1 309 0 2216 116 0 13 chr9 35660713 35661024 -106610420 + AluSg SINE Alu 1 307 -3 2094 130 3 0 chr9 35661290 35661582 -106609862 + AluSq SINE Alu 1 293 -20 874 121 0 16 chr9 35661653 35661777 -106609667 - FLAM_C SINE Alu -16 127 6 343 280 126 0 chr9 35662728 35662910 -106608534 - L1M4 LINE L1 -1892 4254 4050 44 46 0 0 chr9 35662949 35663014 -106608430 + AT_rich Low_complexity Low_complexity 1 65 0 1527 184 121 40 chr9 35663077 35663474 -106607970 - LTR32 LTR ERVL -7 464 36 2037 141 3 0 chr9 35663612 35663909 -106607535 + AluSx SINE Alu 1 298 -14 275 233 56 22 chr9 35663925 35664015 -106607429 + L1ME LINE L1 5425 5517 -645 391 279 61 20 chr9 35664410 35664557 -106606887 - MIR SINE MIR -51 211 59 1616 177 45 10 chr9 35665550 35665838 -106605606 + AluJo SINE Alu 1 298 -14 6178 129 19 16 chr9 35666359 35667326 -106604118 - LTR5 LTR ERVK 0 969 1 24 32 0 0 chr9 35667714 35667745 -106603699 + AT_rich Low_complexity Low_complexity 1 31 0 267 294 8 8 chr9 35668113 35668232 -106603212 + L1M4 LINE L1 3805 3923 -2223 1552 160 31 35 chr9 35668297 35668584 -106602860 - AluJo SINE Alu -26 286 1 2005 153 3 6 chr9 35668657 35668970 -106602474 + AluSx SINE Alu 1 312 0 203 61 30 0 chr9 35669246 35669279 -106602165 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1862 125 84 0 chr9 35669401 35669688 -106601756 + AluSq SINE Alu 1 311 -2 1947 156 18 0 chr9 35669726 35670060 -106601384 - L1PB4 LINE L1 -2 6154 5815 273 151 19 0 chr9 35670072 35670125 -106601319 - L1PA16 LINE L1 -17 6149 6096 651 132 26 0 chr9 35670125 35670239 -106601205 - L1PB4 LINE L1 -327 5829 5713 383 184 46 0 chr9 35670247 35670334 -106601110 + L1PB4 LINE L1 5621 5711 -445 289 115 0 19 chr9 35670404 35670456 -106600988 + Alu SINE Alu 249 299 -2 1175 293 29 12 chr9 35670470 35671119 -106600325 + L1M4 LINE L1 3308 3967 -2179 524 239 72 61 chr9 35671116 35671230 -106600214 + L1MEc LINE L1 1905 2016 -4380 * 2412 84 0 0 chr9 35671230 35671528 -106599916 + AluY SINE Alu 1 298 -13 258 32 0 0 chr9 35671528 35671559 -106599885 + (TA)n Simple_repeat Simple_repeat 1 31 0 524 239 72 61 chr9 35671559 35671596 -106599848 + L1MEc LINE L1 2016 2051 -4345 2177 97 10 13 chr9 35671596 35671894 -106599550 - AluSx SINE Alu -15 297 1 524 239 72 61 chr9 35671894 35672100 -106599344 + L1MEc LINE L1 2051 2268 -4128 1396 192 7 46 chr9 35672112 35672393 -106599051 + AluJo SINE Alu 13 282 -30 494 284 85 3 chr9 35672446 35672752 -106598692 + L1MEc LINE L1 2248 2578 -3637 569 200 19 76 chr9 35672770 35672980 -106598464 + L1MEc LINE L1 2757 2954 -3261 22 56 0 0 chr9 35673008 35673044 -106598400 + AT_rich Low_complexity Low_complexity 1 36 0 2870 189 62 16 chr9 35673044 35673736 -106597708 - L1MB4 LINE L1 -52 6128 5405 1980 287 43 10 chr9 35673748 35674724 -106596720 - L1M4 LINE L1 -2647 3499 2492 505 175 125 50 chr9 35674725 35674885 -106596559 - L1MA9 LINE L1 -3 6309 6138 342 300 96 112 chr9 35674958 35675502 -106595942 + L1M2 LINE L1 870 1404 -5445 34 42 0 0 chr9 35677216 35677264 -106594180 + AT_rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr9 35677295 35677329 -106594115 + AT_rich Low_complexity Low_complexity 1 34 0 396 278 62 6 chr9 35677584 35677760 -106593684 + L1ME LINE L1 5491 5676 -445 21 57 0 0 chr9 35678037 35678072 -106593372 + AT_rich Low_complexity Low_complexity 1 35 0 231 61 0 0 chr9 35678789 35678822 -106592622 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2245 91 0 0 chr9 35678824 35679109 -106592335 - AluSg SINE Alu -25 285 1 1516 208 3 7 chr9 35679507 35679801 -106591643 + AluJo SINE Alu 1 293 -19 533 295 111 43 chr9 35679803 35680041 -106591403 - MIR SINE MIR -8 254 4 244 336 46 30 chr9 35681670 35681801 -106589643 - MER5B DNA MER1_type 0 178 46 450 132 0 0 chr9 35681814 35681882 -106589562 + FRAM/FAM SINE Alu 1 68 -107 698 79 0 30 chr9 35681882 35681983 -106589461 + AluY SINE Alu 30 127 -184 189 0 0 0 chr9 35682017 35682038 -106589406 + (A)n Simple_repeat Simple_repeat 1 21 0 387 282 40 16 chr9 35683033 35683157 -106588287 + MER102b DNA MER1_type 214 340 -1 2284 110 0 0 chr9 35683442 35683741 -106587703 + AluY SINE Alu 1 299 -12 21 36 0 0 chr9 35683980 35684008 -106587436 + AT_rich Low_complexity Low_complexity 1 28 0 230 313 170 9 chr9 35684523 35684635 -106586809 - L2 LINE L2 0 3272 3143 408 88 0 0 chr9 35685355 35685412 -106586032 + (TTA)n Simple_repeat Simple_repeat 3 59 0 195 100 0 0 chr9 35685413 35685443 -106586001 + (TTG)n Simple_repeat Simple_repeat 2 31 0 352 206 243 0 chr9 35686317 35686424 -106585020 - AluJb SINE Alu -169 133 1 2274 77 0 7 chr9 35686764 35687076 -106584368 - AluY SINE Alu 0 310 1 308 88 47 53 chr9 35687155 35687326 -106584118 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 196 324 64 52 chr9 35687943 35688116 -106583328 - MIR SINE MIR -47 215 41 2258 114 0 0 chr9 35688504 35688801 -106582643 + AluSx SINE Alu 1 297 -15 40 21 0 0 chr9 35688837 35688884 -106582560 + AT_rich Low_complexity Low_complexity 1 47 0 2168 193 9 11 chr9 35689144 35689579 -106581865 - Tigger2a DNA MER2_type 0 434 1 1984 125 17 0 chr9 35689946 35690234 -106581210 + AluSx SINE Alu 1 293 -19 26 0 0 0 chr9 35690299 35690325 -106581119 + AT_rich Low_complexity Low_complexity 1 26 0 244 217 67 0 chr9 35691250 35691310 -106580134 - MLT1L LTR MaLR -6 609 546 450 284 118 48 chr9 35691355 35691542 -106579902 - MLT1L LTR MaLR -167 448 229 2061 142 0 0 chr9 35691542 35691837 -106579607 - AluSc SINE Alu -14 295 1 450 284 118 48 chr9 35691837 35691962 -106579482 - MLT1L LTR MaLR -386 229 114 835 195 0 161 chr9 35692138 35692399 -106579045 - MER58A DNA MER1_type -2 222 4 207 167 0 0 chr9 35692665 35692707 -106578737 + A-rich Low_complexity Low_complexity 1 42 0 1063 239 39 28 chr9 35692911 35693195 -106578249 + AluJo SINE Alu 2 288 -14 186 103 0 0 chr9 35693203 35693232 -106578212 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 193 287 147 39 chr9 35693458 35693587 -106577857 + L2 LINE L2 2912 3054 -218 205 196 0 22 chr9 35693615 35693661 -106577783 + L2 LINE L2 3264 3308 -5 1555 221 30 0 chr9 35693860 35694163 -106577281 - AluJo SINE Alu 0 312 1 2275 100 3 0 chr9 35696047 35696337 -106575107 + AluSp SINE Alu 3 293 -20 210 375 9 18 chr9 35698247 35698359 -106573085 + MIR3 SINE MIR 88 198 -10 191 164 0 148 chr9 35698810 35698871 -106572573 + MIR SINE MIR 175 226 -36 396 0 0 0 chr9 35699171 35699215 -106572229 + (TG)n Simple_repeat Simple_repeat 2 45 0 798 213 74 27 chr9 35700455 35700713 -106570731 + L1MB8 LINE L1 5903 6172 -6 410 306 54 0 chr9 35701497 35701644 -106569800 - L2 LINE L2 -438 2876 2722 2275 205 13 27 chr9 35702718 35703245 -106568199 - L1MB8 LINE L1 -6 6172 5653 227 341 47 0 chr9 35704013 35704098 -106567346 + MER91C DNA MER1_type 18 106 -34 180 259 37 0 chr9 35704258 35704312 -106567132 - MIR SINE MIR -2 260 205 854 263 30 0 chr9 35704332 35704530 -106566914 - MIR SINE MIR -24 238 35 1427 181 3 24 chr9 35704573 35704866 -106566578 + AluJo SINE Alu 6 292 -20 1969 137 20 0 chr9 35705285 35705591 -106565853 + AluSx SINE Alu 1 312 0 499 83 48 0 chr9 35705617 35705701 -106565743 + GA-rich Low_complexity Low_complexity 2 89 0 936 139 0 7 chr9 35706010 35706161 -106565283 + AluSg SINE Alu 1 150 -160 695 248 32 50 chr9 35706161 35706443 -106565001 - LTR4 LTR ERV1 -2 594 318 22 0 0 0 chr9 35707664 35707686 -106563758 + AT_rich Low_complexity Low_complexity 1 22 0 1881 129 38 0 chr9 35707747 35708034 -106563410 - AluSg SINE Alu -6 304 7 392 129 0 14 chr9 35708315 35708385 -106563059 + MER34C LTR ERV1 423 491 -94 1951 144 6 3 chr9 35708996 35709308 -106562136 + AluSq SINE Alu 1 313 0 3205 121 29 0 chr9 35709696 35710183 -106561261 - L1PA10 LINE L1 -11 6157 5657 2385 225 24 84 chr9 35710246 35711045 -106560399 - MER4E LTR ERV1 -3 776 26 21 36 0 0 chr9 35711141 35711169 -106560275 + AT_rich Low_complexity Low_complexity 1 28 0 1116 221 75 12 chr9 35711279 35711600 -106559844 - L1MB8 LINE L1 -5 6173 5833 2136 156 63 14 chr9 35711600 35712029 -106559415 - MER61C LTR ERV1 0 434 1 2599 192 34 39 chr9 35712029 35712168 -106559276 - L1MB8 LINE L1 -342 5836 5698 2104 96 0 20 chr9 35712168 35712461 -106558983 + AluSg SINE Alu 1 287 -23 2599 192 34 39 chr9 35712461 35713396 -106558048 - L1MB8 LINE L1 -480 5698 4766 785 280 114 36 chr9 35714730 35715103 -106556341 - MLT1G1 LTR MaLR -34 561 45 1224 161 57 36 chr9 35715139 35715419 -106556025 - L1MA5 LINE L1 -6 6294 6009 1119 224 27 8 chr9 35715492 35715751 -106555693 - AluJo SINE Alu -48 264 1 3210 194 50 28 chr9 35715752 35716846 -106554598 - L1MA5 LINE L1 -354 5946 4808 1427 189 7 33 chr9 35716959 35717261 -106554183 - AluJo SINE Alu -17 295 2 429 231 0 0 chr9 35719708 35719812 -106551632 - L1MA9 LINE L1 -46 6266 6163 2051 124 10 0 chr9 35720751 35721049 -106550395 - AluSg SINE Alu -9 301 1 1205 119 0 0 chr9 35721241 35721409 -106550035 + AluSq SINE Alu 1 168 -145 2737 160 24 26 chr9 35721413 35721957 -106549487 + L1PA16 LINE L1 5624 6166 0 2199 107 0 0 chr9 35722125 35722425 -106549019 - AluSc SINE Alu -9 300 1 24 32 0 0 chr9 35722703 35722734 -106548710 + AT_rich Low_complexity Low_complexity 1 31 0 215 332 145 25 chr9 35723099 35723380 -106548064 + L2 LINE L2 2735 3045 -227 901 188 41 9 chr9 35724245 35724463 -106546981 - L1MC4 LINE L1 -681 7361 7137 749 232 33 11 chr9 35724505 35724686 -106546758 - L1MC4 LINE L1 -1039 7003 6819 254 300 0 18 chr9 35725246 35725347 -106546097 - HSAT5 Satellite Satellite -7 99 1 296 211 0 28 chr9 35725373 35725444 -106546000 - HSAT5 Satellite Satellite -1 85 17 264 231 13 26 chr9 35725633 35725711 -106545733 - HSAT5 Satellite Satellite -1 85 9 232 259 12 24 chr9 35725749 35725834 -106545610 - HSAT5 Satellite Satellite -1 85 2 283 243 14 0 chr9 35726209 35726279 -106545165 + (CA)n Simple_repeat Simple_repeat 2 72 0 1823 138 83 39 chr9 35726511 35726947 -106544497 - SN5 Other centromeric 0 455 1 777 221 88 23 chr9 35728868 35729085 -106542359 + MSTA LTR MaLR 155 385 -43 1497 121 26 0 chr9 35729096 35729328 -106542116 + MSTA-int LTR MaLR 13 250 -1401 1169 188 37 12 chr9 35729325 35729570 -106541874 + MSTA-int LTR MaLR 1401 1651 0 * 1557 222 27 29 chr9 35729570 35729944 -106541500 + MSTA LTR MaLR 1 373 -55 461 238 154 0 chr9 35729972 35730115 -106541329 - MST-int LTR MaLR -981 670 506 * 463 226 0 0 chr9 35730112 35730214 -106541230 + MSTA-int LTR MaLR 28 129 -1522 301 257 0 30 chr9 35730237 35730338 -106541106 + (GGGTG)n Simple_repeat Simple_repeat 3 100 0 293 130 22 0 chr9 35730345 35730391 -106541053 + MSTA-int LTR MaLR 921 967 -613 * 466 186 54 47 chr9 35730379 35730508 -106540936 - THE1-int LTR MaLR -389 1191 1062 240 119 0 71 chr9 35730495 35730537 -106540907 - MST-int LTR MaLR -637 1014 976 * 1172 209 72 7 chr9 35730542 35730834 -106540610 + MSTA LTR MaLR 66 376 -52 499 221 148 10 chr9 35730850 35731002 -106540442 - MST-int LTR MaLR -963 661 466 * 5852 229 76 19 chr9 35731000 35732536 -106538908 + MSTA-int LTR MaLR 28 1651 0 281 202 81 50 chr9 35732538 35732637 -106538807 + MSTA LTR MaLR 3 104 -324 323 258 112 0 chr9 35732677 35732766 -106538678 + MSTA LTR MaLR 57 155 -273 1336 229 3 44 chr9 35732773 35733114 -106538330 + MSTA-int LTR MaLR 1318 1644 -7 395 188 20 20 chr9 35733124 35733225 -106538219 + MSTA LTR MaLR 4 104 -324 292 196 18 0 chr9 35733303 35733359 -106538085 + THE1-int LTR MaLR 911 967 -613 * 691 214 189 40 chr9 35733347 35733595 -106537849 - THE1-int LTR MaLR -389 1191 907 1180 197 82 24 chr9 35733599 35733893 -106537551 + MSTA LTR MaLR 66 376 -52 390 244 168 0 chr9 35733928 35734059 -106537385 - MST-int LTR MaLR -992 659 507 * 6815 214 53 17 chr9 35734056 35735621 -106535823 + MSTA-int LTR MaLR 27 1648 -3 403 237 10 0 chr9 35735623 35735720 -106535724 + MSTA LTR MaLR 3 100 -328 403 198 108 18 chr9 35735765 35735876 -106535568 + MSTA LTR MaLR 58 178 -250 1355 214 6 42 chr9 35735876 35736212 -106535232 + MSTA-int LTR MaLR 1328 1651 0 457 184 11 0 chr9 35736212 35736299 -106535145 + MSTA LTR MaLR 1 88 -340 292 196 18 0 chr9 35736405 35736461 -106534983 + THE1-int LTR MaLR 911 967 -613 * 926 201 189 20 chr9 35736449 35736693 -106534751 - THE1-int LTR MaLR -389 1191 907 947 220 82 25 chr9 35736698 35736980 -106534464 + MSTA LTR MaLR 77 374 -54 541 189 156 10 chr9 35736998 35737149 -106534295 - MST-int LTR MaLR -963 661 466 * 6719 212 50 24 chr9 35737147 35738730 -106532714 + MSTA-int LTR MaLR 28 1651 0 421 232 10 0 chr9 35738730 35738829 -106532615 + MSTA LTR MaLR 1 100 -328 343 203 41 106 chr9 35738851 35738974 -106532470 + MSTA LTR MaLR 57 171 -257 989 252 16 38 chr9 35738983 35739297 -106532147 + MSTA-int LTR MaLR 1345 1651 0 436 200 11 0 chr9 35739301 35739391 -106532053 + MSTA LTR MaLR 5 95 -333 232 200 36 0 chr9 35739491 35739546 -106531898 + MST-int LTR MaLR 979 1035 -616 * 826 198 194 22 chr9 35739544 35739776 -106531668 - THE1-int LTR MaLR -402 1178 907 996 243 56 10 chr9 35739780 35740068 -106531376 + MSTA LTR MaLR 76 376 -52 498 219 161 7 chr9 35740102 35740239 -106531205 - MST-int LTR MaLR -990 661 504 * 6437 215 56 30 chr9 35740234 35741817 -106529627 + MSTA-int LTR MaLR 28 1651 0 377 247 10 0 chr9 35741819 35741916 -106529528 + MSTA LTR MaLR 3 100 -328 356 262 107 0 chr9 35741961 35742064 -106529380 + MSTA LTR MaLR 58 171 -257 1158 258 0 32 chr9 35742076 35742390 -106529054 + MSTA-int LTR MaLR 1347 1650 -1 433 198 10 0 chr9 35742391 35742487 -106528957 + MSTA LTR MaLR 1 97 -331 302 177 65 0 chr9 35742578 35742640 -106528804 + THE1-int LTR MaLR 902 967 -613 * 987 176 189 21 chr9 35742638 35742871 -106528573 - THE1-int LTR MaLR -402 1178 907 1070 224 86 10 chr9 35742877 35743167 -106528277 + MSTA LTR MaLR 65 376 -52 472 225 159 14 chr9 35743201 35743339 -106528105 - MST-int LTR MaLR -990 661 504 * 6177 231 49 30 chr9 35743334 35744928 -106526516 + MSTA-int LTR MaLR 28 1651 0 422 229 10 0 chr9 35744928 35745024 -106526420 + MSTA LTR MaLR 1 97 -331 408 252 93 22 chr9 35745075 35745214 -106526230 + MSTA LTR MaLR 60 208 -220 1110 191 58 15 chr9 35745218 35745491 -106525953 + MSTA-int LTR MaLR 1293 1651 0 465 191 32 0 chr9 35745491 35745585 -106525859 + MSTA LTR MaLR 1 97 -331 200 235 12 49 chr9 35745586 35745667 -106525777 + (GGGTG)n Simple_repeat Simple_repeat 5 82 0 277 152 39 18 chr9 35745682 35745738 -106525706 + MSTA-int LTR MaLR 921 967 -613 * 824 225 189 20 chr9 35745726 35745970 -106525474 - THE1-int LTR MaLR -389 1191 907 869 232 98 12 chr9 35745974 35746228 -106525216 + MSTA LTR MaLR 76 351 -77 443 241 165 8 chr9 35746268 35746401 -106525043 - MST-int LTR MaLR -994 657 504 * 6219 231 50 30 chr9 35746396 35747987 -106523457 + MSTA-int LTR MaLR 28 1651 0 353 229 83 21 chr9 35748081 35748177 -106523267 + MSTA LTR MaLR 58 159 -269 1542 200 0 41 chr9 35748187 35748532 -106522912 + MSTA-int LTR MaLR 1321 1651 0 488 189 11 0 chr9 35748532 35748627 -106522817 + MSTA LTR MaLR 1 96 -330 291 179 18 0 chr9 35748720 35748776 -106522668 + THE1-int LTR MaLR 911 967 -613 * 627 264 178 21 chr9 35748764 35749006 -106522438 - MST-int LTR MaLR -395 1256 977 637 258 81 10 chr9 35749012 35749210 -106522234 + MSTA LTR MaLR 76 287 -141 304 195 20 27 chr9 35749200 35749286 -106522158 - HSAT5 Satellite Satellite -1 85 1 * 230 217 58 29 chr9 35749403 35749472 -106521972 - HSAT5 Satellite Satellite -15 71 1 354 232 0 12 chr9 35749548 35749630 -106521814 - HSAT5 Satellite Satellite -3 83 3 479 175 15 19 chr9 35749858 35750032 -106521412 - HSAT5 Satellite Satellite -1 173 1 288 0 0 0 chr9 35751708 35751740 -106519704 + (TCTCCC)n Simple_repeat Simple_repeat 2 33 0 7221 44 2 33 chr9 35751740 35753327 -106518117 + SVA Other Other 1 1382 -4 438 303 117 11 chr9 35756146 35756410 -106515034 + L2 LINE L2 2998 3289 -24 1566 186 226 3 chr9 35756453 35756795 -106514649 + LTR46 LTR ERV1 1 436 -24 609 27 0 0 chr9 35756795 35756870 -106514574 + (TG)n Simple_repeat Simple_repeat 2 76 0 1566 186 226 3 chr9 35756870 35756903 -106514541 + LTR46 LTR ERV1 436 460 0 407 289 18 9 chr9 35756914 35757028 -106514416 - MIR SINE MIR -116 146 32 1875 162 30 0 chr9 35757208 35757511 -106513933 - AluSx SINE Alu 0 312 1 724 139 0 10 chr9 35757536 35757637 -106513807 - AluSg/x SINE Alu -18 294 195 1765 182 21 15 chr9 35757637 35757972 -106513472 + L1MA9 LINE L1 5819 6155 -157 959 103 0 7 chr9 35757976 35758091 -106513353 + AluSg/x SINE Alu 172 287 -25 814 122 61 14 chr9 35758091 35758238 -106513206 + L1MA9 LINE L1 6159 6312 0 959 103 0 7 chr9 35758238 35758258 -106513186 + AluSg/x SINE Alu 287 306 -6 2331 95 0 10 chr9 35758475 35758780 -106512664 - AluY SINE Alu -9 302 1 1301 281 77 47 chr9 35759101 35760157 -106511287 + L2 LINE L2 2224 3311 -2 2110 227 49 29 chr9 35760772 35761455 -106509989 + L1M3a LINE L1 771 1523 -4780 1990 222 113 63 chr9 35761501 35762411 -106509033 + L1ME3A LINE L1 4377 5332 -814 453 36 0 0 chr9 35762453 35762508 -106508936 + (CA)n Simple_repeat Simple_repeat 2 56 0 422 207 37 0 chr9 35762681 35762763 -106508681 + MLT1E2 LTR MaLR 106 190 -436 1418 212 146 7 chr9 35762783 35763188 -106508256 - L1ME LINE L1 -370 5794 5334 301 241 108 0 chr9 35763991 35764074 -106507370 - MIR SINE MIR -109 153 62 233 114 57 0 chr9 35765889 35765924 -106505520 - Alu SINE Alu -261 42 6 323 374 15 10 chr9 35765937 35766132 -106505312 - L1MEc LINE L1 -3875 2521 2326 1830 291 55 15 chr9 35767029 35767616 -106503828 - MLT2E LTR ERVL -18 610 1 395 236 0 0 chr9 35767624 35767696 -106503748 - Tigger5 DNA MER2_type 0 2323 2252 293 161 0 54 chr9 35767691 35767747 -106503697 + Tigger5 DNA MER2_type 2267 2319 -4 * 341 174 145 14 chr9 35767748 35767817 -106503627 - Tigger5 DNA MER2_type -2245 78 1 2296 79 3 3 chr9 35768877 35769168 -106502276 - AluSg SINE Alu -14 296 6 209 422 44 0 chr9 35770270 35770360 -106501084 + MIR3 SINE MIR 9 102 -106 846 262 96 62 chr9 35770956 35771603 -106499841 + L1ME3A LINE L1 5316 5954 -216 1066 224 9 9 chr9 35771653 35771863 -106499581 - MER63A DNA MER1_type 0 210 1 387 0 0 0 chr9 35773110 35773153 -106498291 + (CA)n Simple_repeat Simple_repeat 2 44 0 2454 62 0 0 chr9 35773204 35773493 -106497951 - AluY SINE Alu -22 289 1 180 378 54 43 chr9 35774040 35774225 -106497219 - L2 LINE L2 -343 2971 2785 2562 189 39 20 chr9 35774361 35774870 -106496574 - MER34 LTR ERV1 0 542 24 221 266 70 113 chr9 35774970 35775271 -106496173 - L2 LINE L2 -806 2508 2221 1304 108 0 5 chr9 35776840 35777025 -106494419 + AluSg/x SINE Alu 115 298 -14 2207 69 28 14 chr9 35777031 35777320 -106494124 + AluSx SINE Alu 5 297 -15 620 299 96 37 chr9 35777325 35777598 -106493846 + L1ME3 LINE L1 4497 4752 -1410 2606 48 0 3 chr9 35777598 35777908 -106493536 + AluY SINE Alu 1 309 -2 620 299 96 37 chr9 35777908 35779009 -106492435 + L1ME3 LINE L1 4752 5951 -211 1955 115 14 7 chr9 35779298 35779607 -106491837 + AluSx SINE Alu 1 312 0 5384 32 3 2 chr9 35779748 35780347 -106491097 + L1PA7 LINE L1 5545 6144 -10 282 302 7 43 chr9 35781730 35781869 -106489575 - L1ME1 LINE L1 -25 6141 6008 * 308 212 35 0 chr9 35781860 35781945 -106489499 - L1M4 LINE L1 -1637 4509 4422 466 225 50 33 chr9 35782438 35782558 -106488886 + L1MC1 LINE L1 6212 6333 0 216 184 0 20 chr9 35782999 35783048 -106488396 + (ATG)n Simple_repeat Simple_repeat 1 48 0 1182 201 78 107 chr9 35783308 35783831 -106487613 + Charlie4a DNA MER1_type 1 508 0 306 169 0 0 chr9 35783985 35784050 -106487394 + CT-rich Low_complexity Low_complexity 2 66 0 1978 23 0 0 chr9 35784203 35784421 -106487023 + L1PA4 LINE L1 5930 6147 -8 642 289 95 9 chr9 35784642 35784874 -106486570 - MIR SINE MIR 0 262 11 199 280 0 0 chr9 35785180 35785230 -106486214 + MIR SINE MIR 96 145 -63 276 238 83 48 chr9 35786161 35786245 -106485199 - L2 LINE L2 -299 2973 2887 402 268 143 37 chr9 35787230 35787551 -106483893 + L1ME3A LINE L1 4740 5094 -1052 24 0 0 0 chr9 35787732 35787756 -106483688 + AT_rich Low_complexity Low_complexity 1 24 0 1012 276 88 24 chr9 35787849 35788397 -106483047 + L1ME3A LINE L1 5369 5951 -219 274 333 30 12 chr9 35791185 35791353 -106480091 - L1P LINE L1 -727 5424 5254 475 319 40 101 chr9 35792491 35793471 -106477973 + L1MEc LINE L1 70 989 -5407 1477 238 105 105 chr9 35793478 35793780 -106477664 + L1M4 LINE L1 3217 3518 -2628 10000 154 20 9 chr9 35793780 35796358 -106475086 + L1PA10 LINE L1 3544 6157 -11 1477 238 105 105 chr9 35796358 35797402 -106474042 + L1M4 LINE L1 3517 4563 -1583 692 259 26 22 chr9 35797397 35797629 -106473815 + L1M4 LINE L1 4901 5133 -1013 * 2609 35 0 16 chr9 35798466 35798782 -106472662 + AluY SINE Alu 1 311 0 328 260 24 59 chr9 35798819 35798988 -106472456 + L1MC5 LINE L1 7769 7931 -30 3621 121 40 9 chr9 35799084 35799661 -106471783 + LTR1B LTR ERV1 1 595 -231 632 195 0 16 chr9 35799674 35799802 -106471642 + LTR1B LTR ERV1 701 826 0 288 326 22 56 chr9 35802423 35802601 -106468843 + L2 LINE L2 2257 2428 -886 645 261 36 40 chr9 35802769 35802991 -106468453 - LTR16A LTR ERVL -116 334 114 204 388 20 13 chr9 35803039 35803191 -106468253 + L2 LINE L2 2544 2696 -618 4257 142 7 36 chr9 35803415 35804112 -106467332 - L1PA16 LINE L1 -3 6163 5487 322 148 6 15 chr9 35804278 35804360 -106467084 - L1PA15 LINE L1 -1 6164 6087 5816 166 20 7 chr9 35804356 35805589 -106465855 - L1PA15 LINE L1 -334 5831 4569 8894 106 18 5 chr9 35805589 35806859 -106464585 + HSMAR1 DNA Mariner 1 1287 0 5816 166 20 7 chr9 35806859 35807368 -106464076 - L1PA15 LINE L1 -1596 4569 4068 22 35 0 0 chr9 35811251 35811280 -106460164 + AT_rich Low_complexity Low_complexity 1 29 0 1117 116 111 0 chr9 35811308 35811497 -106459947 - MER2 DNA MER2_type -135 210 1 255 222 0 111 chr9 35813167 35813266 -106458178 - MIR SINE MIR 0 262 175 208 287 69 46 chr9 35813307 35813394 -106458050 + L2 LINE L2 2947 3035 -237 1790 163 48 15 chr9 35815680 35816012 -106455432 - MER2 DNA MER2_type -1 343 1 1263 255 30 34 chr9 35816780 35817003 -106454441 - L1MB8 LINE L1 -3 6175 5953 2111 93 61 4 chr9 35817003 35817283 -106454161 - AluY SINE Alu -15 296 1 1263 255 30 34 chr9 35817283 35817557 -106453887 - L1MB8 LINE L1 -225 5953 5680 37575 75 6 8 chr9 35817568 35818607 -106452837 + L1PA6 LINE L1 11 1051 -5103 10278 51 72 8 chr9 35818607 35819907 -106451537 + SVA Other Other 1 1383 -3 37575 75 6 8 chr9 35819907 35825026 -106446418 + L1PA6 LINE L1 1051 6154 0 1303 232 78 33 chr9 35825035 35825882 -106445562 - L1MB8 LINE L1 -481 5685 4806 21 71 0 0 chr9 35825882 35825924 -106445520 + AT_rich Low_complexity Low_complexity 1 42 0 252 0 0 0 chr9 35828547 35828575 -106442869 + (CCG)n Simple_repeat Simple_repeat 1 28 0 218 280 11 0 chr9 35828663 35828756 -106442688 + (CCG)n Simple_repeat Simple_repeat 1 94 0 22 35 0 0 chr9 35828849 35828878 -106442566 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 35828907 35828927 -106442517 + (CCGGG)n Simple_repeat Simple_repeat 4 23 0 4438 251 65 39 chr9 35829057 35830336 -106441108 - L1MB8 LINE L1 -1351 4795 3430 553 270 69 29 chr9 35830336 35830540 -106440904 + MER58C DNA MER1_type 3 214 -1 4438 251 65 39 chr9 35830540 35831539 -106439905 - L1MB8 LINE L1 -2716 3430 2458 1244 278 50 26 chr9 35831587 35832192 -106439252 + L1M4c LINE L1 1202 1820 -4564 1088 210 45 38 chr9 35832281 35832680 -106438764 + MLT2A2 LTR ERVL 134 546 -8 1285 174 4 0 chr9 35832680 35832921 -106438523 + L1MA8 LINE L1 5547 5788 -503 212 89 0 67 chr9 35832923 35832968 -106438476 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 2278 130 47 71 chr9 35832989 35833495 -106437949 + L1MA8 LINE L1 5793 6286 -5 24 0 0 0 chr9 35835127 35835151 -106436293 + AT_rich Low_complexity Low_complexity 1 24 0 194 350 68 68 chr9 35835177 35835383 -106436061 + L2 LINE L2 2804 3009 -263 290 273 73 18 chr9 35835505 35835615 -106435829 + L2 LINE L2 3193 3308 -5 793 222 6 0 chr9 35835719 35835886 -106435558 + MLT1D LTR MaLR 1 168 -337 197 359 61 85 chr9 35835915 35836127 -106435317 + L2 LINE L2 3028 3234 -38 200 288 96 27 chr9 35836140 35836213 -106435231 + L2 LINE L2 3193 3270 -43 1041 192 43 13 chr9 35836223 35836457 -106434987 + MLT1D LTR MaLR 179 419 -86 632 268 98 69 chr9 35836643 35836995 -106434449 + L1 LINE L1 3342 3713 -2433 2187 105 0 3 chr9 35836995 35837291 -106434153 + AluY SINE Alu 1 295 -16 632 268 98 69 chr9 35837291 35837419 -106434025 + L1 LINE L1 3713 3836 -2310 257 221 39 77 chr9 35837924 35838028 -106433416 + L2 LINE L2 3193 3292 -21 3713 155 56 3 chr9 35838897 35839576 -106431868 + MER72 LTR ERV1 8 722 0 327 287 98 14 chr9 35840100 35840243 -106431201 + MIR SINE MIR 91 245 -17 671 273 59 5 chr9 35840309 35840529 -106430915 - MIR SINE MIR -19 243 12 2700 153 103 0 chr9 35840541 35841017 -106430427 - LTR45 LTR ERV1 0 525 1 1409 128 200 8 chr9 35842557 35842822 -106428622 + AluSg1 SINE Alu 2 311 0 430 346 5 5 chr9 35843444 35843632 -106427812 - HERVE LTR ERV1 -526 7594 7407 604 358 38 16 chr9 35843763 35844213 -106427231 - HERVE LTR ERV1 -1964 5158 4699 304 299 46 31 chr9 35844636 35844966 -106426478 - HERVE LTR ERV1 -2923 4062 3936 257 299 0 0 chr9 35845209 35845286 -106426158 - HERVE LTR ERV1 -5771 2964 2888 2859 108 28 2 chr9 35846561 35846995 -106424449 - LTR45 LTR ERV1 0 525 81 4544 148 82 7 chr9 35847709 35848549 -106422895 - MER4D LTR ERV1 0 903 1 1071 230 88 12 chr9 35848703 35849042 -106422402 - MLT1A1 LTR MaLR 0 365 1 931 247 226 36 chr9 35849544 35850070 -106421374 - MLT1E2 LTR MaLR -28 626 1 2806 22 0 0 chr9 35851684 35851997 -106419447 - AluYb8 SINE Alu -5 313 1 2007 135 29 35 chr9 35852055 35852432 -106419012 - THE1C LTR MaLR 0 375 1 1797 209 12 25 chr9 35852503 35852893 -106418551 + MER74A LTR ERVL 24 408 -150 2586 182 59 16 chr9 35852893 35853471 -106417973 + MER73 LTR ERVL 1 603 -41 2065 139 17 3 chr9 35853480 35853782 -106417662 + AluSx SINE Alu 1 306 -6 770 209 0 0 chr9 35853787 35853926 -106417518 + MER74A LTR ERVL 420 558 0 263 383 0 0 chr9 35854677 35854771 -106416673 + L2 LINE L2 3174 3267 -5 1458 198 134 68 chr9 35854894 35855363 -106416081 + MLT1D LTR MaLR 6 505 0 4136 116 7 0 chr9 35855489 35856039 -106415405 + MER41A LTR ERV1 1 554 0 252 173 347 0 chr9 35856040 35856115 -106415329 + MER41A-int LTR ERV1 2 102 -5844 4155 126 12 31 chr9 35856124 35856774 -106414670 + MER41A-int LTR ERV1 1 638 -5308 * 11836 121 44 26 chr9 35856762 35857722 -106413722 + MER41A-int LTR ERV1 1079 2021 -3925 2440 74 0 19 chr9 35857722 35858034 -106413410 + AluY SINE Alu 1 306 -5 11836 121 44 26 chr9 35858034 35860219 -106411225 + MER41A-int LTR ERV1 2021 5944 -2 4056 92 45 0 chr9 35860219 35860749 -106410695 + MER41A LTR ERV1 1 554 0 430 253 174 16 chr9 35861004 35861194 -106410250 + MIR SINE MIR 10 229 -33 253 267 93 0 chr9 35861247 35861333 -106410111 - MIR SINE MIR -29 233 140 1529 176 18 15 chr9 35861333 35861606 -106409838 + MLT1B LTR MaLR 1 274 -116 300 288 0 0 chr9 35861961 35862041 -106409403 + MIR3 SINE MIR 117 196 -12 1291 188 66 0 chr9 35862455 35862758 -106408686 + MER33 DNA MER1_type 2 324 0 255 61 0 0 chr9 35863165 35863198 -106408246 + (CA)n Simple_repeat Simple_repeat 2 34 0 1403 186 127 55 chr9 35863439 35863842 -106407602 + MSTB1 LTR MaLR 1 432 0 471 335 62 33 chr9 35864249 35864521 -106406923 + L2 LINE L2 2571 2850 -464 310 276 112 0 chr9 35864606 35864704 -106406740 - L2 LINE L2 -8 3305 3197 1386 229 22 29 chr9 35865108 35865377 -106406067 + L1MEc LINE L1 2076 2342 -4054 1114 210 22 5 chr9 35865377 35865601 -106405843 - L1PA16 LINE L1 0 6166 5939 1386 229 22 29 chr9 35865601 35865742 -106405702 + L1MEc LINE L1 2342 2483 -3913 31 0 0 0 chr9 35865742 35865773 -106405671 + AT_rich Low_complexity Low_complexity 1 31 0 555 39 113 0 chr9 35865773 35866009 -106405435 + (TA)n Simple_repeat Simple_repeat 1 262 0 26 74 0 0 chr9 35866009 35866063 -106405381 + AT_rich Low_complexity Low_complexity 1 54 0 437 82 101 0 chr9 35866070 35866228 -106405216 + (TA)n Simple_repeat Simple_repeat 1 174 0 239 96 109 13 chr9 35866256 35866412 -106405032 + (TA)n Simple_repeat Simple_repeat 1 171 0 439 98 86 0 chr9 35866426 35866589 -106404855 + (TA)n Simple_repeat Simple_repeat 2 178 0 956 231 25 50 chr9 35866589 35866910 -106404534 + L1MEc LINE L1 2441 2753 -3462 1230 171 68 4 chr9 35867155 35867216 -106404228 + AluJo SINE Alu 57 113 -199 241 26 53 0 chr9 35867216 35867254 -106404190 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1230 171 68 4 chr9 35867254 35867426 -106404018 + AluJo SINE Alu 113 305 -7 674 259 87 47 chr9 35867441 35867762 -106403682 - MER46C DNA MER2_type -4 334 1 692 222 123 75 chr9 35867777 35868241 -106403203 - L1ME4a LINE L1 -23 6098 5613 1433 103 0 0 chr9 35868430 35868615 -106402829 - AluSg/x SINE Alu -9 303 119 1130 134 0 12 chr9 35868615 35868779 -106402665 + L1PA15 LINE L1 5991 6152 -13 328 231 217 35 chr9 35868829 35868972 -106402472 - MIR SINE MIR -21 241 73 703 302 116 22 chr9 35869492 35870045 -106401399 + HAL1b LINE L1 67 671 -677 1117 255 81 23 chr9 35870137 35870560 -106400884 + MER113 DNA MER1_type? 34 481 -40 637 214 6 60 chr9 35870560 35870728 -106400716 + MLT1A1 LTR MaLR 1 159 -206 427 329 123 6 chr9 35874411 35874581 -106396863 + MIR SINE MIR 20 209 -53 1416 211 82 38 chr9 35874990 35875361 -106396083 + L1ME2 LINE L1 5690 6085 -79 928 213 34 19 chr9 35875361 35875568 -106395876 - MER63A DNA MER1_type 0 210 1 1416 211 82 38 chr9 35875568 35875642 -106395802 + L1ME2 LINE L1 6085 6154 -10 22 35 0 0 chr9 35875944 35875973 -106395471 + AT_rich Low_complexity Low_complexity 1 29 0 1740 145 64 3 chr9 35875982 35876264 -106395180 + AluJb SINE Alu 1 299 -13 315 0 0 0 chr9 35876264 35876299 -106395145 + (TA)n Simple_repeat Simple_repeat 2 36 0 2166 236 68 40 chr9 35876300 35876926 -106394518 - L1ME1 LINE L1 -23 6143 5536 2039 111 0 0 chr9 35876926 35877196 -106394248 + AluY SINE Alu 37 306 -5 15988 83 6 0 chr9 35877203 35880090 -106391354 + L1PA7 LINE L1 3262 6154 0 2166 236 68 40 chr9 35880090 35881010 -106390434 - L1ME1 LINE L1 -635 5531 4454 2426 64 7 3 chr9 35881103 35881399 -106390045 - AluY SINE Alu -14 297 1 2130 173 19 32 chr9 35881403 35881872 -106389572 + MLT2D LTR ERVL 7 456 -8 446 255 15 59 chr9 35881874 35882025 -106389419 - L1ME1 LINE L1 -1801 4345 4201 839 223 48 0 chr9 35882471 35882637 -106388807 + FAM SINE Alu 1 174 -1 1712 223 65 34 chr9 35884174 35884680 -106386764 - L1ME3A LINE L1 -23 6147 5626 1785 141 3 30 chr9 35885618 35885917 -106385527 + AluJo SINE Alu 21 311 -1 353 375 11 5 chr9 35885935 35886119 -106385325 + MIR SINE MIR 73 257 -5 8993 174 136 19 chr9 35886271 35888246 -106383198 + L1PBa LINE L1 6 2211 -4652 3771 91 9 30 chr9 35888246 35888717 -106382727 + L1PB1 LINE L1 5632 6092 -59 2423 74 3 0 chr9 35888717 35889015 -106382429 + AluY SINE Alu 1 299 -12 3771 91 9 30 chr9 35889015 35889071 -106382373 + L1PB1 LINE L1 6092 6148 -3 2416 91 7 0 chr9 35889096 35889405 -106382039 + AluSx SINE Alu 1 311 -1 1265 195 44 101 chr9 35890259 35890756 -106380688 + L1MEc LINE L1 767 1235 -5161 278 278 57 21 chr9 35891006 35891200 -106380244 + L1M4 LINE L1 3792 3992 -2154 1931 256 54 14 chr9 35891225 35892401 -106379043 + L1MEc LINE L1 35 1347 -5049 356 142 9 3 chr9 35892401 35892476 -106378968 - MLT2B1 LTR ERVL 0 520 368 23 33 0 0 chr9 35892479 35892509 -106378935 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr9 35892539 35892588 -106378856 + AT_rich Low_complexity Low_complexity 1 49 0 719 161 8 54 chr9 35892608 35892738 -106378706 - MLT2B1 LTR ERVL -40 480 357 790 216 57 5 chr9 35892756 35892842 -106378602 - Ricksha DNA DNA -810 444 349 13917 152 46 24 chr9 35892842 35893042 -106378402 - ERVL LTR ERVL -1 5763 5569 1982 145 0 10 chr9 35893042 35893339 -106378105 + AluJb SINE Alu 1 294 -18 13917 152 46 24 chr9 35893339 35895522 -106375922 - ERVL LTR ERVL -195 5569 3328 4571 124 22 13 chr9 35895524 35895863 -106375581 + L1PB1 LINE L1 5452 5787 -364 372 43 0 0 chr9 35895863 35895909 -106375535 + (TG)n Simple_repeat Simple_repeat 1 46 0 4571 124 22 13 chr9 35895909 35896262 -106375182 + L1PB1 LINE L1 5787 6150 -1 3009 184 25 11 chr9 35896267 35896880 -106374564 + L1 LINE L1 3777 4397 -1749 242 69 69 0 chr9 35896881 35896939 -106374505 + (TA)n Simple_repeat Simple_repeat 2 63 0 407 188 12 12 chr9 35896939 35897024 -106374420 + L1PB2 LINE L1 3931 4015 -2131 408 181 0 21 chr9 35897045 35897139 -106374305 + L1PB2 LINE L1 4424 4515 -1631 1137 79 7 0 chr9 35897154 35897294 -106374150 + AluSq SINE Alu 125 265 -48 305 217 64 11 chr9 35897304 35897397 -106374047 - L1MC4 LINE L1 -1339 6983 1995 471 78 0 0 chr9 35897397 35897461 -106373983 + (CA)n Simple_repeat Simple_repeat 1 64 0 5843 146 26 19 chr9 35897472 35898925 -106372519 + L1PB2 LINE L1 4493 5958 -193 2176 110 14 3 chr9 35898925 35899217 -106372227 + AluSc SINE Alu 2 296 -13 5843 146 26 19 chr9 35899217 35899406 -106372038 + L1PB2 LINE L1 5958 6144 -7 946 207 0 0 chr9 35899410 35899574 -106371870 + AluJb SINE Alu 121 284 -28 207 0 0 0 chr9 35899574 35899597 -106371847 + (CA)n Simple_repeat Simple_repeat 2 24 0 2147 112 3 3 chr9 35899681 35899985 -106371459 + AluSp SINE Alu 1 304 -9 4424 88 73 135 chr9 35900779 35901891 -106369553 - pTR5 LTR ERV1 0 2426 34 234 204 74 0 chr9 35901984 35902038 -106369406 + L2 LINE L2 3211 3268 -45 183 42 0 0 chr9 35902081 35902105 -106369339 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 371 269 187 65 chr9 35902497 35902899 -106368545 - L1M2 LINE L1 -5847 1002 552 326 312 48 0 chr9 35904925 35905050 -106366394 - MIR SINE MIR -102 160 30 214 350 10 29 chr9 35905211 35905314 -106366130 - MIR3 SINE MIR -4 204 104 185 135 135 0 chr9 35905625 35905662 -106365782 + L2 LINE L2 3214 3255 -17 523 275 35 40 chr9 35905705 35905905 -106365539 - MLT1J LTR MaLR -8 503 305 329 83 50 0 chr9 35905954 35906014 -106365430 + T-rich Low_complexity Low_complexity 5 67 0 2044 85 77 4 chr9 35906036 35906308 -106365136 - AluSg SINE Alu -18 292 1 25 0 0 0 chr9 35906316 35906341 -106365103 + AT_rich Low_complexity Low_complexity 1 25 0 351 222 35 154 chr9 35906342 35906486 -106364958 - MLT1L LTR MaLR -335 176 94 2226 103 0 7 chr9 35906486 35906777 -106364667 + AluSq SINE Alu 1 289 -24 351 222 35 154 chr9 35906777 35906862 -106364582 - MLT1L LTR MaLR -417 94 1 291 307 20 20 chr9 35906960 35907113 -106364331 - MER5A DNA MER1_type -36 153 1 649 251 94 39 chr9 35907291 35907598 -106363846 - HAL1 LINE L1 -111 2396 2073 231 86 0 0 chr9 35907849 35907884 -106363560 + MER69 DNA AcHobo 2384 2418 -108 458 183 10 48 chr9 35907927 35908031 -106363413 + MER69 DNA AcHobo 2411 2510 -16 1372 219 90 82 chr9 35908040 35908852 -106362592 - HAL1 LINE L1 -845 1662 845 322 305 48 0 chr9 35909583 35909688 -106361756 + L2 LINE L2 3153 3262 -10 194 311 189 0 chr9 35910958 35911080 -106360364 - L2 LINE L2 -195 3077 2933 547 255 48 81 chr9 35911430 35911740 -106359704 - L2 LINE L2 -829 2485 2186 452 327 14 6 chr9 35912340 35912401 -106359043 - MIR3 SINE MIR -21 187 128 2424 86 0 0 chr9 35912401 35912703 -106358741 + AluY SINE Alu 1 302 -9 452 327 14 6 chr9 35912703 35912807 -106358637 - MIR3 SINE MIR -80 128 20 1111 120 40 198 chr9 35913034 35913358 -106358086 - Tigger3(Golem) DNA MER2_type -2 3027 2755 2202 99 3 0 chr9 35913361 35913666 -106357778 + AluSp SINE Alu 1 306 0 1211 143 0 0 chr9 35913666 35913834 -106357610 + AluSg/x SINE Alu 132 299 -11 477 205 0 0 chr9 35913834 35913912 -106357532 - Tigger3(Golem) DNA MER2_type -2951 78 1 455 264 63 19 chr9 35914878 35915037 -106356407 - MIR SINE MIR -76 186 21 2655 37 3 0 chr9 35915354 35915654 -106355790 + AluY SINE Alu 1 301 -10 265 333 70 26 chr9 35915730 35915886 -106355558 + L2 LINE L2 2922 3084 -188 3967 154 82 41 chr9 35916050 35916190 -106355254 + L1MB7 LINE L1 4865 4998 -1186 2043 131 17 0 chr9 35916190 35916481 -106354963 + AluSx SINE Alu 1 296 -16 3967 154 82 41 chr9 35916481 35917079 -106354365 + L1MB7 LINE L1 4998 5570 -614 2562 206 109 30 chr9 35917079 35917758 -106353686 - MER44D DNA MER2_type 0 605 1 3967 154 82 41 chr9 35917758 35917921 -106353523 + L1MB7 LINE L1 5570 5725 -459 2302 99 7 0 chr9 35917921 35918224 -106353220 + AluSg SINE Alu 1 305 -5 2417 57 0 0 chr9 35918226 35918538 -106352906 + AluY SINE Alu 1 312 0 3967 154 82 41 chr9 35918538 35918891 -106352553 + L1MB7 LINE L1 5725 6159 -25 762 169 0 7 chr9 35919108 35919250 -106352194 + FLAM_C SINE Alu 2 142 -1 2204 149 15 35 chr9 35919300 35919476 -106351968 + MLT1B LTR MaLR 3 181 -209 2377 78 0 3 chr9 35919476 35919769 -106351675 + AluSq SINE Alu 1 292 -21 2204 149 15 35 chr9 35919769 35919988 -106351456 + MLT1B LTR MaLR 181 390 0 4474 168 43 34 chr9 35919988 35920132 -106351312 + MLT1B-int LTR MaLR 1 142 -1229 2286 94 19 10 chr9 35920132 35920439 -106351005 + AluSx SINE Alu 1 310 -2 4474 168 43 34 chr9 35920439 35920509 -106350935 + MLT1B-int LTR MaLR 142 210 -1161 2252 119 3 0 chr9 35920509 35920819 -106350625 + AluSx SINE Alu 1 311 -1 4474 168 43 34 chr9 35920819 35921478 -106349966 + MLT1B-int LTR MaLR 210 883 -488 312 333 9 0 chr9 35921539 35921644 -106349800 + MLT1B-int LTR MaLR 678 783 -952 2034 219 47 26 chr9 35921697 35921818 -106349626 + MLT1B-int LTR MaLR 895 1012 -359 1837 107 68 14 chr9 35921818 35922098 -106349346 + AluSg SINE Alu 1 295 -15 2034 219 47 26 chr9 35922098 35922441 -106349003 + MLT1B-int LTR MaLR 1012 1369 -2 1418 152 71 8 chr9 35922443 35922755 -106348689 + MLT1B LTR MaLR 1 381 -9 788 206 57 5 chr9 35922762 35922956 -106348488 + L1MB7 LINE L1 5776 5979 -205 405 222 22 0 chr9 35922956 35923046 -106348398 + MER20 DNA MER1_type 128 219 0 2272 95 0 29 chr9 35923240 35923555 -106347889 - AluSx SINE Alu 0 312 7 728 112 9 0 chr9 35923564 35923671 -106347773 - AluJb SINE Alu 0 312 205 354 135 0 0 chr9 35923671 35923723 -106347721 - AluSp SINE Alu -131 172 121 315 170 0 0 chr9 35923742 35923795 -106347649 - AluJb SINE Alu -169 133 81 2199 132 0 0 chr9 35923795 35924106 -106347338 - AluSx SINE Alu -1 311 1 465 262 28 14 chr9 35924241 35924386 -106347058 - MER20 DNA MER1_type 0 219 73 243 130 0 0 chr9 35924490 35924536 -106346908 - Alu SINE Alu 0 303 258 246 174 0 0 chr9 35925148 35925194 -106346250 + GA-rich Low_complexity Low_complexity 3 48 0 1844 129 16 43 chr9 35925571 35925874 -106345570 - AluJb SINE Alu -17 295 1 28 48 0 0 chr9 35925985 35926027 -106345417 + AT_rich Low_complexity Low_complexity 1 42 0 2249 97 7 7 chr9 35926638 35926927 -106344517 + AluSq SINE Alu 1 289 -24 362 303 53 11 chr9 35927024 35927212 -106344232 + L1ME2 LINE L1 59 254 -6605 1073 274 30 15 chr9 35927594 35927635 -106343809 + L1ME2 LINE L1 1475 1514 -5341 2296 103 3 3 chr9 35927635 35927937 -106343507 - AluSx SINE Alu -10 302 1 1073 274 30 15 chr9 35927937 35928308 -106343136 + L1ME2 LINE L1 1514 1889 -4966 1147 167 27 0 chr9 35928376 35928597 -106342847 + L1 LINE L1 4699 4925 -1221 673 289 119 30 chr9 35928624 35929336 -106342108 + L1ME2 LINE L1 1813 2637 -4501 2234 56 0 77 chr9 35929336 35929659 -106341785 + AluY SINE Alu 1 298 -13 673 289 119 30 chr9 35929659 35929929 -106341515 + L1ME2 LINE L1 2637 2882 -4256 1035 249 98 51 chr9 35929941 35930645 -106340799 + L1ME2 LINE L1 4606 5342 -1615 4830 223 32 33 chr9 35930799 35931521 -106339923 + L1PA12 LINE L1 2196 2917 -4667 2517 71 0 3 chr9 35931521 35931830 -106339614 + AluY SINE Alu 1 308 -3 4830 223 32 33 chr9 35931830 35932997 -106338447 + L1PA12 LINE L1 2917 4104 -3480 3548 136 82 3 chr9 35932997 35933591 -106337853 + L1PA16 LINE L1 5517 6157 -9 308 252 36 29 chr9 35933598 35933737 -106337707 + L1ME2 LINE L1 5344 5483 -1474 1827 179 42 10 chr9 35933737 35934298 -106337146 + MER76 LTR ERV 1 635 -53 502 33 0 0 chr9 35934310 35934371 -106337073 + L1PA16 LINE L1 6097 6157 -9 553 227 23 0 chr9 35934449 35934577 -106336867 + L1ME2 LINE L1 5480 5610 -1347 * 2445 238 57 21 chr9 35934575 35935289 -106336155 + L1ME2 LINE L1 6226 6965 -10 222 128 0 0 chr9 35935381 35935420 -106336024 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1391 86 0 0 chr9 35935669 35935844 -106335600 + AluY SINE Alu 128 302 -9 284 235 0 126 chr9 35936815 35936934 -106334510 + MIR SINE MIR 51 154 -108 2894 10 0 0 chr9 35937094 35937404 -106334040 - AluYa5 SINE Alu -1 310 1 1327 298 86 29 chr9 35939049 35939680 -106331764 + HERVL LTR ERVL 2563 3229 -2425 2848 176 11 0 chr9 35939716 35940187 -106331257 - MER70B LTR ERVL -102 476 1 397 273 9 27 chr9 35940601 35940711 -106330733 + HERVL LTR ERVL 3726 3833 -1821 755 289 102 62 chr9 35940727 35941481 -106329963 - L1MEd LINE L1 -5012 1107 324 341 285 64 47 chr9 35941721 35941893 -106329551 + MIR SINE MIR 2 176 -86 297 279 78 87 chr9 35942441 35942774 -106328670 + L2 LINE L2 2984 3313 0 595 133 37 1 chr9 35942964 35943073 -106328371 + L1MA5A LINE L1 6006 6119 -184 203 269 30 0 chr9 35943834 35943901 -106327543 + (CAGG)n Simple_repeat Simple_repeat 4 72 0 359 298 16 16 chr9 35944520 35944644 -106326800 + MIR SINE MIR 21 144 -118 253 244 115 0 chr9 35945653 35945731 -106325713 + MIR SINE MIR 64 150 -112 547 217 19 76 chr9 35947879 35948036 -106323408 - MER5B DNA MER1_type -29 149 2 374 320 6 58 chr9 35948982 35949154 -106322290 + MER5B DNA MER1_type 16 178 0 747 186 28 0 chr9 35949168 35949313 -106322131 - MER5A DNA MER1_type -7 182 34 198 0 0 0 chr9 35953119 35953141 -106318303 + (CCA)n Simple_repeat Simple_repeat 1 22 0 231 207 0 0 chr9 35953141 35953199 -106318245 + A-rich Low_complexity Low_complexity 1 58 0 1509 117 108 29 chr9 35953501 35953741 -106317703 - AluSx SINE Alu -53 259 1 4462 129 9 10 chr9 35953766 35954465 -106316979 - L1PA16 LINE L1 -9 6157 5460 197 250 19 0 chr9 35955278 35955330 -106316114 + MIR SINE MIR 93 145 -63 264 231 115 0 chr9 35956346 35956424 -106315020 + MIR SINE MIR 64 150 -112 1738 186 113 52 chr9 35956477 35956938 -106314506 - L1MDa LINE L1 -4836 1808 1306 2369 99 0 0 chr9 35956938 35957240 -106314204 - AluSx SINE Alu -10 302 1 1738 186 113 52 chr9 35957240 35957337 -106314107 - L1MDa LINE L1 -5338 1306 1216 2424 177 17 15 chr9 35957345 35957826 -106313618 - L1MC1 LINE L1 -1 6332 5851 799 172 0 14 chr9 35957833 35957978 -106313466 + FLAM_C SINE Alu 1 143 0 1394 147 8 56 chr9 35957997 35958249 -106313195 - AluJo SINE Alu -30 282 43 1150 110 17 6 chr9 35958249 35958422 -106313022 - L1MC1 LINE L1 -510 5823 5649 299 235 25 101 chr9 35958419 35958538 -106312906 + L1MB2 LINE L1 6005 6114 -57 * 412 285 73 57 chr9 35958639 35958955 -106312489 + L1ME4a LINE L1 5578 5898 -223 252 0 0 0 chr9 35958956 35958984 -106312460 + (TG)n Simple_repeat Simple_repeat 2 29 0 305 289 154 7 chr9 35959107 35959256 -106312188 - MIR SINE MIR -8 254 84 965 264 45 32 chr9 35959431 35959741 -106311703 - L1MDa LINE L1 -6227 315 2 2078 134 0 0 chr9 35959755 35960066 -106311378 - AluSx SINE Alu 0 311 1 447 224 42 63 chr9 35960249 35960392 -106311052 + L1M4 LINE L1 483 622 -5920 539 319 94 51 chr9 35960414 35960966 -106310478 + L1M4 LINE L1 797 1372 -5262 321 359 24 12 chr9 35960981 35961148 -106310296 - L2 LINE L2 -180 3092 2924 360 296 107 28 chr9 35961276 35961529 -106309915 - L2 LINE L2 -553 2761 2489 3807 156 24 17 chr9 35961532 35961903 -106309541 + L1PA15 LINE L1 4675 5042 -1123 2211 113 0 0 chr9 35961903 35962194 -106309250 + AluSg SINE Alu 5 295 -15 3807 156 24 17 chr9 35962194 35963009 -106308435 + L1PA15 LINE L1 5042 5867 -298 1653 48 48 0 chr9 35963047 35963255 -106308189 + LTR12 LTR ERV1 493 710 -4 766 207 0 0 chr9 35963255 35963395 -106308049 + AluJb SINE Alu 153 292 -20 1812 114 0 46 chr9 35963396 35963676 -106307768 + AluSg SINE Alu 33 299 -11 5679 161 17 36 chr9 35963678 35964687 -106306757 + L1 LINE L1 3303 4289 -1857 2118 134 0 0 chr9 35964687 35964986 -106306458 + AluSx SINE Alu 1 299 -13 5679 161 17 36 chr9 35964986 35965128 -106306316 + L1 LINE L1 4289 4432 -1714 858 102 0 0 chr9 35965139 35965247 -106306197 - AluSq/x SINE Alu -205 108 1 2063 145 0 13 chr9 35965335 35965645 -106305799 + AluSx SINE Alu 1 306 -6 38 0 0 0 chr9 35965720 35965758 -106305686 + AT_rich Low_complexity Low_complexity 1 38 0 230 189 0 19 chr9 35965859 35965912 -106305532 - L2 LINE L2 0 3313 3262 259 296 0 0 chr9 35966063 35966134 -106305310 - L2 LINE L2 -16 3256 3186 3496 154 45 7 chr9 35966773 35967375 -106304069 + L1MC3 LINE L1 7136 7760 -25 1763 181 3 0 chr9 35967376 35967664 -106303780 + AluJb SINE Alu 1 289 -23 254 262 136 0 chr9 35967725 35967828 -106303616 - MIR SINE MIR -14 248 132 1147 149 0 0 chr9 35967840 35968015 -106303429 + AluSg/x SINE Alu 134 308 -2 237 330 0 0 chr9 35968892 35968980 -106302464 + G-rich Low_complexity Low_complexity 2 89 0 261 83 0 0 chr9 35969037 35969073 -106302371 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 265 206 48 71 chr9 35969106 35969232 -106302212 + C-rich Low_complexity Low_complexity 6 128 0 219 36 0 0 chr9 35969640 35969668 -106301776 + (CCG)n Simple_repeat Simple_repeat 3 30 0 233 29 29 0 chr9 35970276 35970310 -106301134 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr9 35970440 35970461 -106300983 + (A)n Simple_repeat Simple_repeat 1 21 0 2394 77 0 0 chr9 35971549 35971846 -106299598 - AluSg SINE Alu -13 297 1 228 86 0 0 chr9 35972003 35972038 -106299406 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1498 180 14 32 chr9 35973084 35973367 -106298077 - AluJo SINE Alu -34 278 1 2086 106 10 27 chr9 35973530 35973831 -106297613 - AluSx SINE Alu -16 296 1 2378 84 3 3 chr9 35974004 35974302 -106297142 - AluSp SINE Alu -15 298 1 1636 141 44 44 chr9 35974337 35974635 -106296809 - AluJo SINE Alu -14 298 1 21 0 0 0 chr9 35974635 35974656 -106296788 + AT_rich Low_complexity Low_complexity 1 21 0 2151 120 3 3 chr9 35974817 35975116 -106296328 - AluSx SINE Alu -13 299 1 839 157 0 0 chr9 35975127 35975248 -106296196 - FLAM_C SINE Alu -22 121 1 2353 95 0 0 chr9 35975291 35975586 -106295858 - AluSx SINE Alu -17 295 1 294 293 0 75 chr9 35976050 35976120 -106295324 + HsTC2 DNA Tc2 4 61 -1837 2174 112 0 38 chr9 35976120 35976265 -106295179 + AluSx SINE Alu 1 150 -162 2314 83 0 10 chr9 35976265 35976565 -106294879 + AluY SINE Alu 1 297 -14 2174 112 0 38 chr9 35976565 35976733 -106294711 + AluSx SINE Alu 150 302 -10 294 293 0 75 chr9 35976733 35976795 -106294649 + HsTC2 DNA Tc2 61 126 -1772 237 26 205 0 chr9 35977074 35977113 -106294331 + AluY SINE Alu 1 47 -252 2219 115 17 0 chr9 35977155 35977451 -106293993 - AluSx SINE Alu -11 301 1 2144 100 0 14 chr9 35977784 35978073 -106293371 + AluSx SINE Alu 15 299 -13 2072 106 3 7 chr9 35978327 35978609 -106292835 + AluY SINE Alu 1 281 -30 1808 124 6 76 chr9 35978710 35979025 -106292419 + AluSx SINE Alu 5 297 -15 21 0 0 0 chr9 35979041 35979062 -106292382 + AT_rich Low_complexity Low_complexity 1 21 0 846 210 6 30 chr9 35979080 35979247 -106292197 + AluJb SINE Alu 129 291 -21 264 71 94 71 chr9 35979247 35979269 -106292175 + (TTAAA)n Simple_repeat Simple_repeat 2 22 -66 2099 133 0 0 chr9 35979269 35979562 -106291882 + AluSq SINE Alu 1 293 -20 264 71 94 71 chr9 35979562 35979599 -106291845 + (TTAAA)n Simple_repeat Simple_repeat 22 66 -22 2278 122 0 0 chr9 35979599 35979910 -106291534 + AluSx SINE Alu 1 311 -1 264 71 94 71 chr9 35979910 35979934 -106291510 + (TTAAA)n Simple_repeat Simple_repeat 66 88 0 2124 113 14 0 chr9 35979934 35980225 -106291219 + AluSx SINE Alu 1 295 -17 645 301 44 22 chr9 35980373 35980778 -106290666 + L1MEc LINE L1 1390 1803 -4593 2215 68 0 55 chr9 35980811 35981119 -106290325 + AluY SINE Alu 12 302 -9 284 235 0 126 chr9 35982090 35982209 -106289235 + MIR SINE MIR 51 154 -108 2849 22 0 0 chr9 35982374 35982685 -106288759 - AluYa5 SINE Alu 0 311 1 1327 298 86 29 chr9 35984330 35984961 -106286483 + HERVL LTR ERVL 2563 3229 -2425 2848 176 11 0 chr9 35984997 35985468 -106285976 - MER70B LTR ERVL -102 476 1 2378 106 0 0 chr9 35986751 35987053 -106284391 - AluSq SINE Alu -11 302 1 2684 161 16 12 chr9 35987499 35987990 -106283454 + L1MB2 LINE L1 5677 6169 -2 299 364 84 4 chr9 35989034 35989407 -106282037 + L2 LINE L2 2560 2966 -306 476 213 8 71 chr9 35989468 35989595 -106281849 + L2 LINE L2 3179 3297 -16 213 39 0 0 chr9 35989837 35989863 -106281581 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2398 116 0 0 chr9 35990154 35990465 -106280979 - AluSq SINE Alu -2 311 1 226 208 0 0 chr9 35990465 35990513 -106280931 - L1ME3A LINE L1 -224 5946 5899 2327 93 7 7 chr9 35990757 35991067 -106280377 + AluSg SINE Alu 1 310 0 298 203 27 0 chr9 35991918 35991992 -106279452 + L1MEc LINE L1 767 842 -5554 455 264 63 19 chr9 35992109 35992268 -106279176 - MIR SINE MIR -76 186 21 2482 68 0 0 chr9 35992585 35992877 -106278567 + AluSq SINE Alu 1 292 -21 1306 169 5 0 chr9 35992877 35993096 -106278348 + MLT1B LTR MaLR 171 390 0 4086 174 45 36 chr9 35993096 35993240 -106278204 + MLT1B-int LTR MaLR 1 142 -1229 2286 94 19 10 chr9 35993240 35993547 -106277897 + AluSx SINE Alu 1 310 -2 4086 174 45 36 chr9 35993547 35993617 -106277827 + MLT1B-int LTR MaLR 142 210 -1161 2252 119 3 0 chr9 35993617 35993927 -106277517 + AluSx SINE Alu 1 311 -1 4086 174 45 36 chr9 35993927 35994550 -106276894 + MLT1B-int LTR MaLR 210 847 -524 303 238 0 0 chr9 35994756 35994819 -106276625 - MLT1H1 LTR MaLR -492 63 1 215 184 0 0 chr9 35994926 35994964 -106276480 + L2 LINE L2 3149 3186 -86 329 312 14 35 chr9 35995036 35995177 -106276267 + MIR3 SINE MIR 42 179 -29 1781 165 58 36 chr9 35995202 35995565 -106275879 - MLT1A2 LTR MaLR 0 374 4 500 196 5 162 chr9 35995946 35996150 -106275294 - MER5B DNA MER1_type 0 178 7 1684 192 104 72 chr9 35996252 35996517 -106274927 + MLT1D LTR MaLR 1 291 -214 2188 126 3 0 chr9 35996517 35996827 -106274617 + AluSq SINE Alu 3 313 0 1684 192 104 72 chr9 35996827 35997050 -106274394 + MLT1D LTR MaLR 291 505 0 311 143 16 0 chr9 35997445 35997508 -106273936 + AluSp/q SINE Alu 240 303 0 757 181 30 8 chr9 35997508 35997641 -106273803 - MER2 DNA MER2_type -209 136 1 256 225 0 45 chr9 35997653 35997742 -106273702 + (TA)n Simple_repeat Simple_repeat 2 86 0 402 236 28 66 chr9 35997792 35997820 -106273624 + HAL1 LINE L1 1155 1183 -1324 1174 180 43 106 chr9 35997820 35997940 -106273504 + AluJo SINE Alu 1 127 -175 1730 172 20 17 chr9 35997940 35998242 -106273202 + AluJo SINE Alu 1 303 -9 1174 180 43 106 chr9 35998242 35998443 -106273001 + AluJo SINE Alu 127 302 0 402 236 28 66 chr9 35998443 35998596 -106272848 + HAL1 LINE L1 1183 1329 -1178 796 252 104 0 chr9 35998606 35998876 -106272568 + HAL1 LINE L1 1395 1692 -815 2033 136 0 7 chr9 35998890 35999184 -106272260 - AluSx SINE Alu -19 293 2 341 98 115 16 chr9 35999184 35999245 -106272199 + L1MB8 LINE L1 6049 6115 -63 1318 117 0 75 chr9 35999246 35999460 -106271984 - Tigger3(Golem) DNA MER2_type 0 3029 2832 1366 86 6 6 chr9 35999461 35999636 -106271808 - AluSq SINE Alu -138 175 1 24 0 0 0 chr9 35999696 35999720 -106271724 + AT_rich Low_complexity Low_complexity 1 24 0 2329 106 6 0 chr9 35999720 36000031 -106271413 - AluSp SINE Alu 0 313 1 2199 119 0 0 chr9 36000034 36000329 -106271115 - AluSx SINE Alu -17 295 1 202 289 0 0 chr9 36000653 36000705 -106270739 + MIR SINE MIR 211 262 0 23 0 0 0 chr9 36001424 36001447 -106269997 + AT_rich Low_complexity Low_complexity 1 23 0 2160 106 0 7 chr9 36001603 36001896 -106269548 - AluY SINE Alu -18 293 3 327 249 221 55 chr9 36002320 36002400 -106269044 - MIR SINE MIR -19 243 178 993 232 157 20 chr9 36002400 36002796 -106268648 - MLT1J2 LTR MaLR 0 450 1 327 249 221 55 chr9 36002796 36002896 -106268548 - MIR SINE MIR -84 178 33 2421 95 0 3 chr9 36003988 36004292 -106267152 - AluSq SINE Alu -9 304 2 1307 256 23 7 chr9 36004525 36004833 -106266611 + MLT1A1 LTR MaLR 1 313 -52 566 240 54 54 chr9 36004988 36005155 -106266289 + MIR SINE MIR 49 218 -44 2473 58 0 35 chr9 36005155 36005467 -106265977 + AluY SINE Alu 1 301 -10 566 240 54 54 chr9 36005467 36005503 -106265941 + MIR SINE MIR 217 252 -10 990 179 10 46 chr9 36005690 36005885 -106265559 - MER5A DNA MER1_type -1 188 1 415 298 128 14 chr9 36005960 36006178 -106265266 - MIR SINE MIR -14 248 6 1231 193 119 28 chr9 36006350 36006635 -106264809 - AluJb SINE Alu -1 311 1 291 278 139 0 chr9 36006878 36006986 -106264458 - MLT1H LTR MaLR -327 222 100 363 143 0 0 chr9 36006986 36007040 -106264404 - Alu SINE Alu -252 48 1 20099 83 2 1 chr9 36007430 36010156 -106261288 + L1P LINE L1 11 2737 -3409 22 0 0 0 chr9 36010257 36010279 -106261165 + AT_rich Low_complexity Low_complexity 1 22 0 1002 114 42 6 chr9 36010349 36010508 -106260936 - AluSg/x SINE Alu -14 296 129 1929 132 9 41 chr9 36010508 36010692 -106260752 - AluSx SINE Alu -4 308 137 2072 131 0 3 chr9 36010692 36010989 -106260455 - AluSq SINE Alu -17 296 1 1929 132 9 41 chr9 36010989 36011122 -106260322 - AluSx SINE Alu -175 137 1 977 188 0 33 chr9 36011319 36011500 -106259944 + L1PB4 LINE L1 5974 6148 -8 2323 79 10 7 chr9 36011748 36012051 -106259393 - AluSp SINE Alu -9 304 1 1555 117 5 0 chr9 36012113 36012327 -106259117 - AluSg/x SINE Alu -13 297 83 2070 102 10 3 chr9 36012466 36012761 -106258683 + AluSx SINE Alu 5 301 -11 701 124 0 0 chr9 36012953 36013050 -106258394 + HY3 scRNA scRNA 1 97 -4 213 39 0 0 chr9 36013050 36013076 -106258368 + (A)n Simple_repeat Simple_repeat 1 26 0 833 165 8 8 chr9 36013135 36013268 -106258176 + FLAM_C SINE Alu 1 133 0 1673 111 0 0 chr9 36013393 36013618 -106257826 - AluSg/x SINE Alu -13 299 75 185 0 40 0 chr9 36013618 36013643 -106257801 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1999 130 0 7 chr9 36013644 36013936 -106257508 - AluY SINE Alu -21 290 1 2327 78 3 0 chr9 36014002 36014309 -106257135 + AluSp SINE Alu 1 308 0 2238 99 0 13 chr9 36014350 36014664 -106256780 + AluY SINE Alu 1 310 -1 299 173 40 0 chr9 36014773 36014848 -106256596 - L1ME1 LINE L1 -5 6161 6084 2102 119 0 3 chr9 36015046 36015340 -106256104 - AluY SINE Alu -18 293 1 970 93 47 0 chr9 36015340 36015469 -106255975 - AluSq/x SINE Alu -178 135 1 2158 180 71 9 chr9 36015605 36016054 -106255390 - L1MB4 LINE L1 -1 6179 5703 448 262 0 78 chr9 36016055 36016165 -106255279 - L1M4c LINE L1 -6225 159 61 2130 106 6 37 chr9 36016165 36016486 -106254958 - AluSx SINE Alu -1 311 1 448 262 0 78 chr9 36016486 36016516 -106254928 - L1M4c LINE L1 -6323 61 30 303 225 53 119 chr9 36016554 36016610 -106254834 - L1ME4a LINE L1 -7 6114 6056 2318 102 3 0 chr9 36016610 36016915 -106254529 + AluSp SINE Alu 7 312 -1 303 225 53 119 chr9 36016915 36017009 -106254435 - L1ME4a LINE L1 -65 6056 5974 1967 156 3 0 chr9 36017121 36017422 -106254022 - AluSx SINE Alu -10 302 1 281 169 104 13 chr9 36017468 36017545 -106253899 - L1ME4a LINE L1 -2050 5758 5675 1877 162 0 3 chr9 36017575 36017865 -106253579 + AluJo SINE Alu 1 289 -23 367 165 118 63 chr9 36017866 36017993 -106253451 + Tigger3(Golem) DNA MER2_type 2395 2528 -501 1307 96 0 17 chr9 36017996 36018174 -106253270 + AluSq SINE Alu 1 175 -138 1369 113 0 70 chr9 36018175 36018388 -106253056 + Tigger3(Golem) DNA MER2_type 2832 3029 0 377 82 115 16 chr9 36018389 36018450 -106252994 - L1MB8 LINE L1 -63 6115 6049 2009 139 0 7 chr9 36018450 36018745 -106252699 + AluSx SINE Alu 2 294 -18 815 252 104 0 chr9 36018759 36019029 -106252415 - HAL1 LINE L1 -815 1692 1395 419 236 28 66 chr9 36019039 36019192 -106252252 - HAL1 LINE L1 -1178 1329 1183 1266 177 47 109 chr9 36019192 36019393 -106252051 - AluJo SINE Alu 0 302 127 1744 169 20 17 chr9 36019393 36019695 -106251749 - AluJo SINE Alu -9 303 1 1266 177 47 109 chr9 36019695 36019815 -106251629 - AluJo SINE Alu -175 127 1 419 236 28 66 chr9 36019815 36019843 -106251601 - HAL1 LINE L1 -1324 1183 1155 256 225 0 45 chr9 36019893 36019982 -106251462 + (TA)n Simple_repeat Simple_repeat 1 85 0 724 186 31 8 chr9 36019994 36020123 -106251321 + MER2 DNA MER2_type 1 132 -213 421 101 0 29 chr9 36020123 36020192 -106251252 - Alu SINE Alu -8 302 236 293 167 0 19 chr9 36020257 36020311 -106251133 + MER2 DNA MER2_type 268 320 -25 212 167 21 0 chr9 36020323 36020371 -106251073 + (TA)n Simple_repeat Simple_repeat 2 50 0 442 156 0 0 chr9 36020536 36020600 -106250844 + AluS SINE Alu 2 65 -253 2169 114 3 0 chr9 36020776 36021074 -106250370 + AluSx SINE Alu 1 299 -13 1731 175 42 82 chr9 36021076 36021214 -106250230 + MLT1A1 LTR MaLR 1 143 -222 2193 114 0 0 chr9 36021214 36021513 -106249931 - AluSq SINE Alu -14 299 1 1731 175 42 82 chr9 36021513 36021689 -106249755 + MLT1A1 LTR MaLR 143 300 -65 1847 162 7 14 chr9 36021689 36021985 -106249459 + AluJo SINE Alu 1 294 -18 1731 175 42 82 chr9 36021985 36022046 -106249398 + MLT1A1 LTR MaLR 300 362 -3 241 237 21 82 chr9 36022175 36022272 -106249172 - L1ME3A LINE L1 -106 6064 5974 1405 244 70 48 chr9 36022361 36022906 -106248538 - L1MC5 LINE L1 -449 7512 6956 1037 139 7 0 chr9 36022911 36023062 -106248382 - AluSq SINE Alu -23 290 139 2294 82 10 0 chr9 36023063 36023355 -106248089 - AluSx SINE Alu -17 295 1 794 244 53 51 chr9 36023360 36023736 -106247708 - L1MC5 LINE L1 -1064 6978 6589 6728 161 124 138 chr9 36024002 36024097 -106247347 - Cheshire DNA MER1_type 0 2420 2325 1546 169 15 8 chr9 36024097 36024358 -106247086 + AluJb SINE Alu 5 267 -45 6728 161 124 138 chr9 36024358 36024868 -106246576 - Cheshire DNA MER1_type -95 2325 1810 702 197 134 14 chr9 36024868 36025010 -106246434 + FRAM SINE Alu 1 159 -7 2330 105 0 3 chr9 36025018 36025322 -106246122 - AluSx SINE Alu -7 305 3 6728 161 124 138 chr9 36025322 36025454 -106245990 - Cheshire DNA MER1_type -617 1803 1671 2099 122 14 0 chr9 36025454 36025750 -106245694 - AluSx SINE Alu -12 300 1 6728 161 124 138 chr9 36025750 36026194 -106245250 - Cheshire DNA MER1_type -749 1671 1223 2183 88 11 0 chr9 36026194 36026479 -106244965 - AluSq SINE Alu -25 288 1 6728 161 124 138 chr9 36026479 36026745 -106244699 - Cheshire DNA MER1_type -1197 1223 955 2210 104 7 7 chr9 36026745 36027044 -106244400 - AluSx SINE Alu -13 299 1 6728 161 124 138 chr9 36027044 36027156 -106244288 - Cheshire DNA MER1_type -1465 955 843 555 71 0 0 chr9 36027156 36027226 -106244218 - AluSp/q SINE Alu -10 303 234 2426 64 0 7 chr9 36027226 36027523 -106243921 - AluY SINE Alu -16 295 1 6728 161 124 138 chr9 36027523 36027701 -106243743 - Cheshire DNA MER1_type -1576 844 665 2093 124 7 10 chr9 36027701 36027836 -106243608 + AluSx SINE Alu 1 135 -177 2173 73 63 0 chr9 36027836 36028122 -106243322 + AluY SINE Alu 1 304 -7 2093 124 7 10 chr9 36028122 36028284 -106243160 + AluSx SINE Alu 135 297 -15 6728 161 124 138 chr9 36028284 36028807 -106242637 - Cheshire DNA MER1_type -1755 665 106 757 271 127 48 chr9 36028809 36029059 -106242385 - L1MCc LINE L1 -4590 2532 2303 1981 132 10 10 chr9 36029059 36029370 -106242074 - AluSx SINE Alu -1 311 1 757 271 127 48 chr9 36029370 36029723 -106241721 - L1MCc LINE L1 -4819 2303 1979 2167 114 3 10 chr9 36029723 36030030 -106241414 - AluSq SINE Alu -8 305 1 757 271 127 48 chr9 36030030 36030479 -106240965 - L1MCc LINE L1 -5143 1979 1173 1985 136 3 10 chr9 36030581 36030876 -106240568 - AluSq SINE Alu -17 296 4 1363 189 97 37 chr9 36031038 36031148 -106240296 - Charlie1 DNA MER1_type -400 2361 2259 1745 180 7 0 chr9 36031148 36031442 -106240002 + AluSx SINE Alu 1 296 -16 1363 189 97 37 chr9 36031442 36031681 -106239763 - Charlie1 DNA MER1_type -502 2259 1991 2481 80 0 0 chr9 36031681 36031983 -106239461 + AluSp SINE Alu 1 302 -11 234 292 0 21 chr9 36032050 36032146 -106239298 + (TATATG)n Simple_repeat Simple_repeat 5 98 0 455 229 25 8 chr9 36032168 36032286 -106239158 + MIR SINE MIR 74 193 -69 1337 179 4 40 chr9 36032294 36032567 -106238877 + AluJb SINE Alu 19 281 -31 259 237 140 32 chr9 36032570 36032663 -106238781 - MIR SINE MIR -76 186 84 26 30 0 0 chr9 36033861 36033894 -106237550 + AT_rich Low_complexity Low_complexity 1 33 0 1442 227 218 15 chr9 36033924 36034471 -106236973 - L1MC4 LINE L1 -144 7898 7241 267 164 49 0 chr9 36034474 36034535 -106236909 - L1MC4 LINE L1 -957 7085 7022 30 59 0 0 chr9 36034585 36034636 -106236808 + AT_rich Low_complexity Low_complexity 1 51 0 1826 145 10 3 chr9 36034736 36035026 -106236418 + AluJo SINE Alu 1 292 -20 1929 143 45 0 chr9 36035445 36035731 -106235713 + AluSx SINE Alu 1 299 -13 2231 104 16 0 chr9 36035984 36036291 -106235153 - AluSp SINE Alu -1 312 1 302 44 0 0 chr9 36036483 36036528 -106234916 - AluJo SINE Alu 0 302 258 863 172 29 46 chr9 36036528 36036702 -106234742 - AluJo SINE Alu -141 171 1 266 262 207 55 chr9 36036704 36037029 -106234415 - L1M4 LINE L1 -3131 3015 2612 2179 114 0 7 chr9 36037029 36037328 -106234116 - AluSq SINE Alu -16 297 1 266 262 207 55 chr9 36037328 36037418 -106234026 - L1M4 LINE L1 -3534 2612 2537 1722 152 26 0 chr9 36037424 36037693 -106233751 - AluJb SINE Alu -11 301 26 351 320 71 48 chr9 36037725 36037994 -106233450 - L1M4 LINE L1 -3594 2552 2278 1626 147 96 0 chr9 36038502 36038774 -106232670 + AluJb SINE Alu 1 298 -14 897 215 114 64 chr9 36038974 36039412 -106232032 - HAL1 LINE L1 -1 2506 2047 360 181 0 0 chr9 36039506 36039589 -106231855 + (TCCG)n Simple_repeat Simple_repeat 2 84 0 2333 98 3 0 chr9 36039595 36039902 -106231542 - AluSx SINE Alu -4 308 1 285 330 18 9 chr9 36039902 36040011 -106231433 - HAL1 LINE L1 -2394 113 4 2078 125 10 0 chr9 36040022 36040318 -106231126 - AluSx SINE Alu -9 303 5 1353 192 49 21 chr9 36041126 36041413 -106230031 - AluJb SINE Alu -17 295 1 2151 107 0 4 chr9 36041517 36041830 -106229614 - AluSg SINE Alu 0 312 1 22 0 0 0 chr9 36041840 36041862 -106229582 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr9 36042467 36042507 -106228937 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr9 36042506 36042530 -106228914 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1569 187 3 21 chr9 36042530 36042813 -106228631 - AluJo SINE Alu -34 278 1 21 0 0 0 chr9 36042813 36042834 -106228610 + AT_rich Low_complexity Low_complexity 1 21 0 1550 166 26 15 chr9 36043323 36043594 -106227850 + AluJo SINE Alu 1 274 -38 2345 43 0 7 chr9 36043644 36043965 -106227479 - AluY SINE Alu 0 319 1 1559 130 29 104 chr9 36043991 36044307 -106227137 + AluSx SINE Alu 1 292 -20 2320 107 0 3 chr9 36044549 36044858 -106226586 - AluSg SINE Alu -2 308 1 2025 102 44 14 chr9 36045629 36045924 -106225520 + AluSg SINE Alu 7 310 0 1964 103 40 30 chr9 36045947 36046247 -106225197 + AluSx SINE Alu 1 303 -9 1218 157 0 15 chr9 36046393 36046590 -106224854 - AluSg/x SINE Alu -15 297 104 1450 165 0 25 chr9 36046590 36046832 -106224612 - AluSx SINE Alu -76 236 1 1478 167 10 48 chr9 36047266 36047427 -106224017 - AluJo SINE Alu -25 287 140 2417 93 3 0 chr9 36047427 36047729 -106223715 - AluSq SINE Alu -10 303 1 1478 167 10 48 chr9 36047729 36047861 -106223583 - AluJo SINE Alu -172 140 5 660 224 63 87 chr9 36047887 36047918 -106223526 - HAL1 LINE L1 -142 2365 2335 2154 67 32 18 chr9 36047918 36048201 -106223243 - AluSg SINE Alu -23 287 1 660 224 63 87 chr9 36048201 36048519 -106222925 - HAL1 LINE L1 -172 2335 2025 2255 110 0 19 chr9 36048519 36048838 -106222606 - AluSq SINE Alu 0 313 1 660 224 63 87 chr9 36048838 36048912 -106222532 - HAL1 LINE L1 -482 2025 1951 2306 105 0 0 chr9 36048948 36049244 -106222200 - AluSx SINE Alu -16 296 1 729 279 22 26 chr9 36049277 36049506 -106221938 - L1ME3A LINE L1 -34 6136 5909 481 262 59 73 chr9 36049486 36049772 -106221672 - L1ME3A LINE L1 -823 5323 5042 * 664 106 96 0 chr9 36049798 36049892 -106221552 - Alu SINE Alu -207 104 2 1237 225 178 18 chr9 36049916 36050410 -106221034 - L1ME3A LINE L1 -270 5900 5328 435 102 0 0 chr9 36050410 36050469 -106220975 - AluYb8 SINE Alu -89 229 171 1034 145 0 0 chr9 36050471 36050616 -106220828 + AluSg/x SINE Alu 128 272 -38 640 239 39 7 chr9 36050688 36050843 -106220601 - LTR28 LTR ERV1 -467 553 394 597 230 169 11 chr9 36050880 36051080 -106220364 - LTR1 LTR ERV1 -559 226 33 1770 165 21 3 chr9 36051691 36051982 -106219462 + AluJb SINE Alu 1 296 -16 2165 91 3 14 chr9 36052129 36052455 -106218989 - AluSq SINE Alu 0 323 1 24 0 0 0 chr9 36052515 36052539 -106218905 + AT_rich Low_complexity Low_complexity 1 24 0 2299 109 6 0 chr9 36052539 36052850 -106218594 - AluSp SINE Alu 0 313 1 2184 119 0 0 chr9 36052853 36053148 -106218296 - AluSx SINE Alu -17 295 1 215 306 69 0 chr9 36053452 36053524 -106217920 + MIR SINE MIR 186 262 0 201 344 10 10 chr9 36053550 36053646 -106217798 + L2 LINE L2 2434 2529 -785 189 296 200 37 chr9 36053691 36053826 -106217618 + L2 LINE L2 2916 3072 -200 23 0 0 0 chr9 36054243 36054266 -106217178 + AT_rich Low_complexity Low_complexity 1 23 0 2158 105 0 7 chr9 36054422 36054717 -106216727 - AluY SINE Alu -18 293 1 21 0 0 0 chr9 36054777 36054798 -106216646 + AT_rich Low_complexity Low_complexity 1 21 0 1489 181 20 33 chr9 36054810 36055109 -106216335 + AluJb SINE Alu 1 295 -17 326 82 0 20 chr9 36055116 36055165 -106216279 - L1MC1 LINE L1 -19 6314 6267 2265 102 3 0 chr9 36055212 36055507 -106215937 + AluSp SINE Alu 3 298 -15 2236 121 0 0 chr9 36055598 36055903 -106215541 + AluSx SINE Alu 1 305 -7 1441 181 20 53 chr9 36056353 36056652 -106214792 - AluJb SINE Alu -13 289 1 2267 108 3 0 chr9 36056656 36056953 -106214491 - AluSx SINE Alu -14 298 1 223 239 30 0 chr9 36057216 36057283 -106214161 + (TA)n Simple_repeat Simple_repeat 2 70 0 1666 166 30 17 chr9 36057372 36057673 -106213771 - AluJo SINE Alu -7 305 1 782 75 0 0 chr9 36057723 36057817 -106213627 - AluSg SINE Alu -215 95 2 273 183 141 0 chr9 36057896 36057967 -106213477 - L1MC5 LINE L1 -272 7689 7609 239 189 0 75 chr9 36057993 36058046 -106213398 + Tigger7 DNA MER2_type 437 485 -2002 680 161 93 17 chr9 36058166 36058284 -106213160 + FLAM_A SINE Alu 1 127 -6 259 339 54 15 chr9 36058330 36058460 -106212984 - MIR SINE MIR -73 189 55 2293 91 21 0 chr9 36058785 36059070 -106212374 + AluSx SINE Alu 1 291 -21 238 161 36 18 chr9 36059318 36059339 -106212105 + AluJb SINE Alu 114 135 -167 2434 60 7 3 chr9 36059339 36059637 -106211807 + AluY SINE Alu 1 299 -12 1169 138 133 5 chr9 36059638 36059834 -106211610 + AluSg/x SINE Alu 73 293 -19 2344 63 0 3 chr9 36059886 36060171 -106211273 - AluY SINE Alu -11 300 17 312 138 0 0 chr9 36060502 36060567 -106210877 + (TC)n Simple_repeat Simple_repeat 1 65 0 1400 105 0 11 chr9 36060569 36060759 -106210685 - AluSq SINE Alu -121 192 5 495 213 63 0 chr9 36060787 36060914 -106210530 - MIR SINE MIR -30 232 98 1488 148 44 33 chr9 36060922 36060945 -106210499 + AluJb SINE Alu 8 29 -283 2375 139 49 45 chr9 36060945 36061040 -106210404 - MER83 LTR ERV1 0 448 355 1883 147 3 20 chr9 36061040 36061340 -106210104 + AluJb SINE Alu 1 295 -17 2375 139 49 45 chr9 36061340 36061690 -106209754 - MER83 LTR ERV1 -93 355 1 1488 148 44 33 chr9 36061690 36061937 -106209507 + AluJb SINE Alu 29 281 -31 180 111 0 0 chr9 36061938 36061965 -106209479 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 323 236 57 38 chr9 36061967 36062073 -106209371 - MIR SINE MIR -152 110 3 1882 143 36 0 chr9 36062170 36062450 -106208994 - AluJb SINE Alu -22 290 1 1558 219 95 76 chr9 36062461 36062577 -106208867 - L1M4 LINE L1 -2962 3682 3570 1841 181 0 9 chr9 36062577 36062892 -106208552 - AluJb SINE Alu 0 312 1 1558 219 95 76 chr9 36062892 36063369 -106208075 - L1M4 LINE L1 -3074 3570 3066 1524 122 106 82 chr9 36063369 36063698 -106207746 + MER1B DNA MER1_type 1 337 0 1558 219 95 76 chr9 36063698 36063955 -106207489 - L1M4 LINE L1 -3578 3066 2815 * 2080 185 86 80 chr9 36063950 36064011 -106207433 - L1MD3 LINE L1 -166 7829 7770 1073 163 6 0 chr9 36064011 36064189 -106207255 - L1MB7 LINE L1 -19 6165 5987 2080 185 86 80 chr9 36064189 36064547 -106206897 - L1MD3 LINE L1 -225 7770 7416 416 211 33 11 chr9 36064547 36064637 -106206807 - MLT1F1 LTR MaLR -429 138 47 2080 185 86 80 chr9 36064637 36064988 -106206456 - L1MD3 LINE L1 -579 7416 6732 2109 113 10 0 chr9 36064996 36065288 -106206156 - AluSg SINE Alu -15 295 1 692 154 6 51 chr9 36065358 36065514 -106205930 - L1MB8 LINE L1 -5 6173 6025 2096 139 0 0 chr9 36065514 36065802 -106205642 + AluSx SINE Alu 2 289 -23 467 209 47 0 chr9 36065811 36065940 -106205504 - L1M4 LINE L1 -988 5158 5024 822 191 89 24 chr9 36065953 36066121 -106205323 - MER21B LTR ERV1 -138 725 547 2353 94 3 7 chr9 36066140 36066449 -106204995 + AluSc SINE Alu 1 308 -1 283 223 58 19 chr9 36066464 36066567 -106204877 - L1M4 LINE L1 -5116 1426 1320 1464 167 38 38 chr9 36066586 36066874 -106204570 + AluJb SINE Alu 1 288 -24 350 42 21 0 chr9 36066905 36066953 -106204491 + (TC)n Simple_repeat Simple_repeat 2 50 0 1722 165 24 0 chr9 36066979 36067276 -106204168 - AluJo SINE Alu 0 312 9 3976 229 57 51 chr9 36067286 36068545 -106202899 - L1M4 LINE L1 -5241 1301 35 510 221 35 73 chr9 36068561 36068811 -106202633 + L1ME4a LINE L1 5666 5913 -208 2563 67 0 0 chr9 36069081 36069380 -106202064 + AluSc SINE Alu 1 299 -10 2181 77 11 21 chr9 36070353 36070681 -106200763 - AluSg SINE Alu 0 325 1 918 294 6 6 chr9 36070684 36071004 -106200440 - L1M4 LINE L1 -3262 2884 2565 2002 145 20 0 chr9 36071218 36071522 -106199922 - AluSx SINE Alu -2 310 1 661 219 95 18 chr9 36071907 36072076 -106199368 - MLT1A2 LTR MaLR -37 337 156 1077 83 0 0 chr9 36072078 36072210 -106199234 - AluY SINE Alu -179 132 1 238 143 48 0 chr9 36072210 36072252 -106199192 - MLT1A2 LTR MaLR -204 161 118 2016 123 21 0 chr9 36072400 36072685 -106198759 - AluSg SINE Alu -18 292 2 1602 98 76 4 chr9 36073010 36073235 -106198209 + AluSg SINE Alu 1 241 -69 2217 100 0 0 chr9 36073236 36073515 -106197929 + AluSg SINE Alu 1 279 -31 2149 100 31 0 chr9 36073754 36074045 -106197399 - AluSg SINE Alu -10 300 1 429 111 0 0 chr9 36074155 36074218 -106197226 - AluS SINE Alu -255 63 1 2056 132 0 7 chr9 36074243 36074550 -106196894 + AluSx SINE Alu 1 305 0 659 166 0 5 chr9 36074707 36074864 -106196580 + AluJb SINE Alu 1 234 -78 212 171 0 0 chr9 36074864 36074899 -106196545 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 373 129 0 14 chr9 36075266 36075336 -106196108 - L1MC1 LINE L1 0 6333 6265 301 60 40 0 chr9 36075807 36075857 -106195587 - L1MB5 LINE L1 -8 6166 6115 565 174 22 0 chr9 36075858 36075950 -106195494 + FRAM SINE Alu 51 144 -32 195 42 0 0 chr9 36075958 36075982 -106195462 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2605 195 13 11 chr9 36075983 36076103 -106195341 - L1MB5 LINE L1 -55 6119 6000 3319 216 93 87 chr9 36076103 36076506 -106194938 - L1MC1 LINE L1 -745 5401 5002 1870 146 14 0 chr9 36076506 36076810 -106194634 - AluSx SINE Alu 0 308 1 3319 216 93 87 chr9 36076810 36076859 -106194585 - L1MC1 LINE L1 -1144 5002 4955 265 75 0 50 chr9 36076859 36076899 -106194545 - Alu SINE Alu -264 38 1 3319 216 93 87 chr9 36076899 36077029 -106194415 - L1MC1 LINE L1 -1191 4955 4827 819 150 0 30 chr9 36077029 36077162 -106194282 + FLAM_C SINE Alu 1 129 -4 3319 216 93 87 chr9 36077162 36077311 -106194133 - L1MC1 LINE L1 -1319 4827 4680 1360 198 66 7 chr9 36077311 36077495 -106193949 - AluJo SINE Alu -7 305 96 1337 228 11 7 chr9 36077495 36077776 -106193668 + AluJb SINE Alu 1 282 -30 1360 198 66 7 chr9 36077776 36077879 -106193565 - AluJo SINE Alu -216 96 1 3319 216 93 87 chr9 36077879 36078648 -106192796 - L1MC1 LINE L1 -1466 4680 3917 2264 99 3 3 chr9 36078648 36078952 -106192492 - AluSx SINE Alu -8 304 1 3319 216 93 87 chr9 36078952 36079320 -106192124 - L1MC1 LINE L1 -2229 3917 4024 1991 121 7 26 chr9 36079320 36079626 -106191818 - AluY SINE Alu -10 301 2 3319 216 93 87 chr9 36079626 36079756 -106191688 - L1MC1 LINE L1 -2121 4025 3897 2541 39 0 0 chr9 36079904 36080189 -106191255 - AluY SINE Alu 0 311 27 2489 71 0 3 chr9 36080200 36080497 -106190947 - AluSp SINE Alu -17 296 1 2477 93 3 0 chr9 36080643 36080954 -106190490 - AluSp SINE Alu -1 312 1 2255 109 13 0 chr9 36080957 36081259 -106190185 - AluSg SINE Alu -4 306 1 38 22 0 0 chr9 36081328 36081373 -106190071 + AT_rich Low_complexity Low_complexity 1 45 0 21 23 0 47 chr9 36081467 36081490 -106189954 + AT_rich Low_complexity Low_complexity 1 23 -18 705 235 24 12 chr9 36081490 36081660 -106189784 + FAM SINE Alu 1 172 -3 21 23 0 47 chr9 36081660 36081679 -106189765 + AT_rich Low_complexity Low_complexity 23 41 0 2045 84 63 11 chr9 36082088 36082246 -106189198 - AluSx SINE Alu -13 299 151 2394 88 0 0 chr9 36082246 36082552 -106188892 - AluSg SINE Alu -4 306 1 2045 84 63 11 chr9 36082552 36082677 -106188767 - AluSx SINE Alu -161 151 1 21 0 0 0 chr9 36082755 36082776 -106188668 + AT_rich Low_complexity Low_complexity 1 21 0 502 214 38 0 chr9 36083434 36083565 -106187879 - L1MC3 LINE L1 -103 7682 7547 219 188 0 0 chr9 36083570 36083618 -106187826 + (TA)n Simple_repeat Simple_repeat 2 49 0 856 128 8 0 chr9 36083622 36083747 -106187697 - FLAM_C SINE Alu -17 126 1 380 90 0 15 chr9 36083789 36083856 -106187588 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 816 207 14 0 chr9 36083856 36084001 -106187443 - AluJb SINE Alu -31 281 135 2101 175 58 14 chr9 36084023 36084457 -106186987 - L1MC3 LINE L1 -314 7471 7019 538 240 276 16 chr9 36084461 36084715 -106186729 - Charlie2a DNA MER1_type -877 1985 1666 1472 211 16 16 chr9 36084788 36085091 -106186353 - AluJb SINE Alu -7 305 3 834 136 0 0 chr9 36085092 36085210 -106186234 - AluJb SINE Alu -175 137 20 252 237 13 13 chr9 36085246 36085322 -106186122 + MIR SINE MIR 146 221 -41 2457 75 3 0 chr9 36085697 36085992 -106185452 + AluSp SINE Alu 1 296 -17 203 298 0 0 chr9 36088881 36088928 -106182516 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 2065 128 7 0 chr9 36088959 36089300 -106182144 - AluSp SINE Alu 0 344 2 1558 186 26 0 chr9 36089634 36089903 -106181541 + AluJo SINE Alu 1 276 -36 2158 83 29 14 chr9 36090695 36091004 -106180440 - AluSp SINE Alu 0 313 1 296 276 81 49 chr9 36091160 36091283 -106180161 - MLT1K LTR MaLR -329 259 133 697 210 57 17 chr9 36091660 36091733 -106179711 - MER3 DNA MER1_type 0 209 140 1008 169 0 6 chr9 36091733 36091914 -106179530 + FAM SINE Alu 5 175 0 697 210 57 17 chr9 36091914 36092016 -106179428 - MER3 DNA MER1_type -69 140 27 2006 126 10 10 chr9 36092084 36092385 -106179059 + AluSx SINE Alu 1 301 -11 421 200 0 0 chr9 36092405 36092480 -106178964 + AluJ/FLAM SINE Alu 1 75 -237 982 69 0 0 chr9 36092480 36092596 -106178848 - AluY SINE Alu -193 118 3 2246 108 0 13 chr9 36093020 36093326 -106178118 - AluSg SINE Alu -8 302 1 438 299 8 22 chr9 36093405 36093539 -106177905 + L2 LINE L2 3136 3267 -5 2191 121 7 3 chr9 36093700 36094005 -106177439 + AluSx SINE Alu 1 306 -6 2266 85 36 13 chr9 36094006 36094312 -106177132 + AluSp SINE Alu 1 313 0 22 0 0 0 chr9 36094627 36094649 -106176795 + AT_rich Low_complexity Low_complexity 1 22 0 2416 84 3 0 chr9 36095222 36095518 -106175926 + AluSx SINE Alu 1 297 -15 2295 115 0 0 chr9 36095842 36096138 -106175306 - AluSg SINE Alu -14 296 1 1600 194 18 11 chr9 36096162 36096441 -106175003 - AluJo SINE Alu -31 281 1 2146 109 27 7 chr9 36097433 36097727 -106173717 + AluSx SINE Alu 2 301 -11 1837 161 24 0 chr9 36097734 36098025 -106173419 + AluJo SINE Alu 1 298 -14 414 227 188 81 chr9 36098530 36098865 -106172579 - L2 LINE L2 -1 3312 2942 2208 97 0 0 chr9 36098940 36099219 -106172225 + AluSg SINE Alu 1 279 -31 266 231 0 0 chr9 36100031 36100096 -106171348 + (ATG)n Simple_repeat Simple_repeat 2 66 0 1271 72 179 0 chr9 36107695 36107890 -106163554 - MER30 DNA MER1_type 0 230 1 353 273 52 58 chr9 36112530 36112599 -106158845 + L1MC4a LINE L1 5260 5328 -2480 2258 124 0 6 chr9 36112599 36112914 -106158530 + AluSq SINE Alu 1 313 0 353 273 52 58 chr9 36112914 36112998 -106158446 + L1MC4a LINE L1 5328 5412 -2396 268 288 157 53 chr9 36113031 36113335 -106158109 + L1MC4a LINE L1 5468 5832 -1976 180 0 0 0 chr9 36113335 36113355 -106158089 + (CAA)n Simple_repeat Simple_repeat 2 21 0 268 288 157 53 chr9 36113355 36113484 -106157960 + L1MC4a LINE L1 5832 5946 -1862 2501 89 0 0 chr9 36113495 36113798 -106157646 + AluSg SINE Alu 1 303 -7 1153 197 57 9 chr9 36113963 36114191 -106157253 - MER8 DNA MER2_type 0 239 1 1379 131 181 23 chr9 36118187 36118446 -106152998 - AluSg SINE Alu 0 300 1 229 368 0 21 chr9 36118466 36118561 -106152883 - L3 LINE CR1 -494 1083 991 1260 180 10 0 chr9 36118953 36119159 -106152285 - AluJb SINE Alu -102 210 3 2159 102 3 31 chr9 36119169 36119463 -106151981 - AluSx SINE Alu -16 296 11 407 151 0 27 chr9 36119465 36119560 -106151884 + AluS SINE Alu 224 311 0 353 281 26 0 chr9 36119567 36119681 -106151763 + L1M4 LINE L1 3305 3421 -2725 668 215 7 0 chr9 36119697 36119832 -106151612 + FLAM_A SINE Alu 6 141 -1 507 295 0 6 chr9 36119836 36119992 -106151452 + L1M4 LINE L1 3454 3608 -2538 314 233 23 58 chr9 36120018 36120104 -106151340 + HAL1 LINE L1 2239 2321 -186 1906 153 24 0 chr9 36120208 36120502 -106150942 + AluSx SINE Alu 5 305 -7 1867 121 17 47 chr9 36120505 36120803 -106150641 + AluSq SINE Alu 1 289 -24 1681 187 16 3 chr9 36120868 36121173 -106150271 - AluJb SINE Alu -3 309 1 817 185 0 15 chr9 36121175 36121310 -106150134 - AluJo/FLAM SINE Alu -179 133 1 2470 74 3 0 chr9 36121394 36121693 -106149751 + AluSx SINE Alu 1 300 -12 2273 101 3 19 chr9 36122069 36122376 -106149068 - AluSx SINE Alu -8 304 3 358 174 51 2 chr9 36122433 36122612 -106148832 + AluJb SINE Alu 79 298 -4 294 83 0 0 chr9 36122648 36122684 -106148760 + (T)n Simple_repeat Simple_repeat 1 36 0 2107 90 65 0 chr9 36122784 36123062 -106148382 - AluSg SINE Alu -14 296 1 2264 93 4 0 chr9 36123062 36123339 -106148105 - AluSp SINE Alu -34 279 1 774 203 0 0 chr9 36123339 36123472 -106147972 - AluJo SINE Alu -177 135 3 23 0 0 0 chr9 36123474 36123497 -106147947 + AT_rich Low_complexity Low_complexity 1 23 0 867 170 7 7 chr9 36123527 36123674 -106147770 - LTR39 LTR ERV1 0 783 637 2336 73 0 14 chr9 36123675 36124005 -106147439 + AluY SINE Alu 1 326 0 1572 199 3 10 chr9 36124036 36124332 -106147112 - AluJb SINE Alu -18 294 1 1162 149 22 0 chr9 36124344 36124525 -106146919 - AluSg/x SINE Alu -2 308 124 2127 104 0 14 chr9 36124542 36124829 -106146615 - AluSg SINE Alu -27 283 1 1925 157 7 3 chr9 36124837 36125142 -106146302 - AluJb SINE Alu -6 306 1 2821 100 5 2 chr9 36125159 36125570 -106145874 - MER75 DNA T2_type 0 514 103 366 155 0 0 chr9 36125568 36125626 -106145818 - AluJ/FLAM SINE Alu -240 62 5 * 1722 87 0 0 chr9 36125693 36125901 -106145543 + AluSx SINE Alu 1 208 -104 316 51 0 0 chr9 36125949 36125988 -106145456 + Alu SINE Alu 6 44 -259 649 73 0 0 chr9 36125991 36126073 -106145371 + AluSp/q SINE Alu 213 294 -19 831 155 0 0 chr9 36126073 36126189 -106145255 - AluJo/FLAM SINE Alu -185 117 2 195 42 0 0 chr9 36126210 36126234 -106145210 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 2122 113 24 7 chr9 36126242 36126534 -106144910 - AluSx SINE Alu -15 297 1 1869 72 4 4 chr9 36126860 36127095 -106144349 - AluY SINE Alu -14 297 63 1990 129 7 42 chr9 36127184 36127326 -106144118 + AluSx SINE Alu 3 148 -164 2406 72 3 0 chr9 36127326 36127619 -106143825 + AluY SINE Alu 1 294 -17 1990 129 7 42 chr9 36127619 36127786 -106143658 + AluSx SINE Alu 148 301 -11 22 56 0 0 chr9 36127837 36127873 -106143571 + AT_rich Low_complexity Low_complexity 1 36 0 797 157 0 0 chr9 36127873 36127988 -106143456 - FLAM_C SINE Alu -15 118 4 993 194 18 6 chr9 36128101 36128271 -106143173 + FAM SINE Alu 2 173 -2 2353 79 0 10 chr9 36128431 36128736 -106142708 + AluY SINE Alu 1 302 -9 233 300 0 0 chr9 36129047 36129107 -106142337 - MIR SINE MIR -133 129 70 322 141 42 0 chr9 36129754 36129825 -106141619 + GA-rich Low_complexity Low_complexity 2 75 0 1457 106 0 0 chr9 36129957 36130145 -106141299 - AluSx SINE Alu -11 299 112 521 116 0 0 chr9 36130146 36130215 -106141229 - AluSx SINE Alu -243 70 2 933 146 0 0 chr9 36130845 36130982 -106140462 + AluSq/x SINE Alu 1 137 -176 2345 84 13 7 chr9 36130982 36131292 -106140152 + AluSp SINE Alu 1 312 -1 2250 123 0 0 chr9 36131318 36131618 -106139826 + AluSx SINE Alu 1 300 -12 415 294 40 0 chr9 36131618 36131744 -106139700 - L1ME2 LINE L1 -122 6042 5912 368 150 4 12 chr9 36131779 36132007 -106139437 + AluJo SINE Alu 1 302 0 1629 150 20 41 chr9 36132030 36132324 -106139120 - AluJb SINE Alu -23 289 2 2280 117 3 0 chr9 36132335 36132643 -106138801 - AluSx SINE Alu -3 309 1 1882 196 29 5 chr9 36132686 36133069 -106138375 - MER65C LTR ERV1 0 461 70 407 193 41 0 chr9 36133084 36133200 -106138244 - AluSg/x SINE Alu -17 283 216 680 89 0 0 chr9 36133200 36133290 -106138154 - AluS SINE Alu -221 91 2 1133 88 0 0 chr9 36133373 36133510 -106137934 + AluSq/x SINE Alu 1 137 -176 1627 95 0 47 chr9 36133516 36133576 -106137868 + AluSg/x SINE Alu 82 143 -167 1911 50 0 0 chr9 36133576 36133794 -106137650 + AluY SINE Alu 82 299 -12 1627 95 0 47 chr9 36133794 36133965 -106137479 + AluSg/x SINE Alu 143 302 -8 198 0 0 0 chr9 36137442 36137464 -106133980 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 296 269 21 15 chr9 36138732 36138847 -106132597 + MIR SINE MIR 79 193 -15 229 284 68 14 chr9 36139360 36139434 -106132010 - Charlie8 DNA MER1_type -2190 227 150 2159 103 58 0 chr9 36139437 36139729 -106131715 + AluSx SINE Alu 2 310 -2 2360 155 22 50 chr9 36139827 36140285 -106131159 - MER65A LTR ERV1 0 445 1 1687 177 3 45 chr9 36140508 36140819 -106130625 - AluJo SINE Alu -14 298 1 236 303 56 14 chr9 36140889 36141031 -106130413 + L1M LINE L1 5255 5402 -2406 180 0 0 0 chr9 36141033 36141053 -106130391 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2379 62 0 17 chr9 36141053 36141345 -106130099 - AluY SINE Alu -24 287 1 1229 64 0 0 chr9 36141349 36141506 -106129938 - L1PA5 LINE L1 0 6154 5998 1863 166 10 0 chr9 36141511 36141800 -106129644 - AluJb SINE Alu -4 308 17 273 267 0 0 chr9 36141970 36142086 -106129358 + C-rich Low_complexity Low_complexity 1 116 0 209 232 14 0 chr9 36142194 36142263 -106129181 + C-rich Low_complexity Low_complexity 6 75 0 316 78 39 0 chr9 36142373 36142424 -106129020 + Alu SINE Alu 245 297 -5 1837 170 10 0 chr9 36142449 36142738 -106128706 + AluJb SINE Alu 17 308 -4 1229 64 0 0 chr9 36142743 36142900 -106128544 + L1PA5 LINE L1 5998 6154 0 2348 62 0 17 chr9 36142904 36143193 -106128251 + AluY SINE Alu 1 284 -27 180 0 0 0 chr9 36143197 36143217 -106128227 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1687 177 3 45 chr9 36143430 36143741 -106127703 + AluJo SINE Alu 1 298 -14 2360 155 22 50 chr9 36143964 36144422 -106127022 + MER65A LTR ERV1 1 445 0 2243 89 58 0 chr9 36144520 36144811 -106126633 - AluSg SINE Alu -2 308 1 2264 93 4 0 chr9 36144811 36145088 -106126356 - AluSp SINE Alu -34 279 1 774 203 0 0 chr9 36145088 36145221 -106126223 - AluJo SINE Alu -177 135 3 243 189 0 0 chr9 36145225 36145276 -106126168 - FLAM_A SINE Alu -2 131 81 867 170 7 7 chr9 36145276 36145423 -106126021 - LTR39 LTR ERV1 0 783 637 2429 63 0 17 chr9 36145424 36145723 -106125721 + AluY SINE Alu 1 294 -17 1147 138 6 0 chr9 36145723 36145890 -106125554 + AluSg/x SINE Alu 132 299 -11 22 56 0 0 chr9 36145941 36145977 -106125467 + AT_rich Low_complexity Low_complexity 1 36 0 797 157 0 0 chr9 36145977 36146092 -106125352 - FLAM_C SINE Alu -15 118 4 993 194 18 6 chr9 36146205 36146375 -106125069 + FAM SINE Alu 2 173 -2 2353 79 0 10 chr9 36146535 36146840 -106124604 + AluY SINE Alu 1 302 -9 236 300 0 0 chr9 36147151 36147211 -106124233 - MIR SINE MIR -133 129 70 2292 120 3 0 chr9 36147241 36147542 -106123902 - AluSp SINE Alu -11 302 1 1972 93 52 38 chr9 36147556 36147847 -106123597 - AluSc SINE Alu -14 295 1 2351 101 0 0 chr9 36148031 36148328 -106123116 - AluSq SINE Alu -16 297 1 2396 96 0 10 chr9 36148506 36148820 -106122624 - AluSx SINE Alu -1 311 1 2135 114 0 16 chr9 36148852 36149022 -106122422 - AluSg SINE Alu -8 302 138 2477 31 38 3 chr9 36149022 36149309 -106122135 - AluY SINE Alu -12 299 3 2135 114 0 16 chr9 36149309 36149444 -106122000 - AluSg SINE Alu -172 138 2 308 273 115 60 chr9 36149634 36149817 -106121627 - MIR SINE MIR 0 262 70 561 138 41 24 chr9 36149936 36150059 -106121385 - 7SK RNA RNA -68 125 1 684 202 8 0 chr9 36152208 36152327 -106119117 - FLAM_A SINE Alu -13 120 1 2472 59 20 3 chr9 36153354 36153658 -106117786 - AluY SINE Alu -1 310 2 1948 115 25 14 chr9 36154355 36154641 -106116803 + AluSg SINE Alu 1 289 -21 2238 88 16 13 chr9 36154653 36154961 -106116483 - AluY SINE Alu -2 309 1 2029 128 0 3 chr9 36155137 36155444 -106116000 - AluSx SINE Alu 0 306 1 993 164 30 0 chr9 36155446 36155611 -106115833 - AluSg/x SINE Alu -9 301 132 2426 70 0 13 chr9 36155611 36155911 -106115533 - AluY SINE Alu -15 296 1 1248 190 138 8 chr9 36155913 36156181 -106115263 - AluYa8 SINE Alu -7 303 1 1536 184 58 7 chr9 36156233 36156510 -106114934 + AluJo SINE Alu 1 291 -21 1930 133 39 11 chr9 36156564 36156850 -106114594 + AluJb SINE Alu 5 298 -14 1617 167 37 0 chr9 36156947 36157217 -106114227 - AluJo SINE Alu -18 294 15 733 142 9 0 chr9 36157404 36157510 -106113934 - FLAM_C SINE Alu -25 118 12 2159 114 7 3 chr9 36157530 36157828 -106113616 - AluSg SINE Alu -11 299 1 348 216 106 76 chr9 36157929 36157990 -106113454 - L1ME1 LINE L1 -262 5904 5846 2129 125 0 3 chr9 36157990 36158285 -106113159 - AluSx SINE Alu -18 294 1 1517 128 4 37 chr9 36158295 36158538 -106112906 - AluSp SINE Alu -4 309 75 2178 107 3 38 chr9 36158538 36158856 -106112588 - AluSq SINE Alu -6 307 1 348 216 106 76 chr9 36158856 36159111 -106112333 - L1ME1 LINE L1 -327 5839 5566 607 232 73 0 chr9 36159120 36159284 -106112160 - MER105 DNA DNA -1 203 28 270 153 68 17 chr9 36159304 36159363 -106112081 - L1ME1 LINE L1 -648 5516 5455 602 174 0 0 chr9 36159455 36159553 -106111891 - FLAM_C SINE Alu -35 108 11 233 261 34 0 chr9 36159563 36159651 -106111793 - L1MDa LINE L1 -3968 2572 2482 1292 120 16 0 chr9 36159679 36159852 -106111592 - AluSg SINE Alu -6 304 126 2282 84 7 7 chr9 36159852 36160150 -106111294 - AluSp SINE Alu -15 298 1 6713 68 15 10 chr9 36160162 36161727 -106109717 - SVA Other Other -723 1386 46 962 125 0 0 chr9 36161730 36161858 -106109586 - AluSg SINE Alu -182 128 1 1336 162 103 33 chr9 36161858 36162129 -106109315 - AluJb SINE Alu -8 304 15 1908 123 6 72 chr9 36162592 36162739 -106108705 + AluSx SINE Alu 1 115 -197 2331 92 7 0 chr9 36162739 36163044 -106108400 + AluY SINE Alu 1 307 -4 1908 123 6 72 chr9 36163044 36163228 -106108216 + AluSx SINE Alu 115 310 -2 195 257 159 18 chr9 36163340 36163453 -106107991 - L2 LINE L2 -5 3308 3180 2333 88 3 10 chr9 36163610 36163915 -106107529 + AluSp SINE Alu 1 303 -10 596 170 45 9 chr9 36164001 36164113 -106107331 - AluJb SINE Alu -7 305 190 1119 160 0 21 chr9 36164317 36164504 -106106940 - AluSg/x SINE Alu -5 305 123 2194 104 0 3 chr9 36164511 36164808 -106106636 - AluSx SINE Alu -16 296 1 2235 109 3 0 chr9 36165136 36165440 -106106004 - AluSc SINE Alu -4 305 1 2288 107 3 0 chr9 36165997 36166295 -106105149 + AluSq SINE Alu 1 299 -14 819 184 0 0 chr9 36166312 36166453 -106104991 + AluSg/x SINE Alu 158 298 -14 3811 95 44 2 chr9 36166454 36167003 -106104441 - L1MA1 LINE L1 -175 6127 5556 2038 132 27 3 chr9 36167097 36167392 -106104052 - AluSx SINE Alu -10 302 1 1621 151 53 28 chr9 36167895 36168179 -106103265 - AluJo SINE Alu -21 291 1 421 152 0 25 chr9 36168227 36168306 -106103138 - AluJ/FRAM SINE Alu 0 302 226 541 131 61 20 chr9 36168306 36168405 -106103039 + AluSg/x SINE Alu 102 204 -108 1852 90 8 0 chr9 36168427 36168661 -106102783 + AluSq SINE Alu 1 236 -77 947 131 6 120 chr9 36168661 36168740 -106102704 - AluSx SINE Alu -150 162 114 1664 105 9 0 chr9 36168740 36168968 -106102476 - AluSq SINE Alu -14 299 70 947 131 6 120 chr9 36168968 36169071 -106102373 - AluSx SINE Alu -198 114 1 2194 105 3 19 chr9 36169075 36169389 -106102055 - AluY SINE Alu -2 309 1 1504 151 6 70 chr9 36169394 36169559 -106101885 - AluJb SINE Alu -20 292 118 183 42 0 0 chr9 36169559 36169583 -106101861 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2384 52 0 14 chr9 36169583 36169870 -106101574 - AluY SINE Alu -28 283 1 1504 151 6 70 chr9 36169870 36170015 -106101429 - AluJb SINE Alu -192 120 1 2288 103 3 0 chr9 36170025 36170326 -106101118 - AluSg SINE Alu -8 302 1 878 140 0 22 chr9 36170344 36170480 -106100964 - FLAM_C SINE Alu 0 133 1 2196 107 10 7 chr9 36170490 36170789 -106100655 - AluSq SINE Alu -13 300 1 471 202 55 9 chr9 36170790 36170899 -106100545 - L1M4 LINE L1 -491 5693 5580 884 218 31 35 chr9 36170902 36171131 -106100313 - AluJo SINE Alu -13 299 72 236 157 235 0 chr9 36171131 36171182 -106100262 - Charlie3 DNA MER1_type -2641 69 7 2058 123 3 3 chr9 36171355 36171685 -106099759 + AluSq SINE Alu 1 330 0 2384 83 0 19 chr9 36172158 36172471 -106098973 - AluY SINE Alu -4 307 1 770 151 0 50 chr9 36172473 36172612 -106098832 - AluJo/FLAM SINE Alu -170 132 1 1423 117 5 10 chr9 36172643 36172848 -106098596 - AluSx SINE Alu -108 204 1 783 211 119 23 chr9 36173191 36173409 -106098035 + MIR SINE MIR 1 239 -23 734 178 0 22 chr9 36174172 36174307 -106097137 + FLAM_C SINE Alu 2 133 0 2218 111 0 10 chr9 36175052 36175349 -106096095 - AluSx SINE Alu -18 294 1 2060 84 62 0 chr9 36175688 36175963 -106095481 - AluSp SINE Alu -17 296 5 2274 100 3 0 chr9 36175979 36176280 -106095164 - AluY SINE Alu -9 302 1 2236 94 17 3 chr9 36176800 36177099 -106094345 - AluSc SINE Alu -6 303 1 2154 125 10 10 chr9 36177306 36177611 -106093833 + AluSx SINE Alu 1 305 -7 566 184 18 9 chr9 36177611 36177720 -106093724 - FLAM_A SINE Alu -32 110 1 2099 135 0 0 chr9 36177779 36178082 -106093362 - AluSq SINE Alu -10 303 1 2207 124 0 0 chr9 36178111 36178409 -106093035 + AluSx SINE Alu 1 298 -14 2186 75 0 11 chr9 36179101 36179381 -106092063 + AluY SINE Alu 22 298 -13 2084 120 3 17 chr9 36179416 36179715 -106091729 + AluSx SINE Alu 1 295 -17 1031 77 28 0 chr9 36179726 36179869 -106091575 + Tigger3(Golem) DNA MER2_type 2191 2337 -692 2214 92 34 7 chr9 36179869 36180161 -106091283 - AluSg SINE Alu -10 300 1 330 26 0 0 chr9 36180311 36180350 -106091094 + (TG)n Simple_repeat Simple_repeat 2 40 0 1449 181 22 4 chr9 36180351 36180622 -106090822 - L1MB3 LINE L1 -14 6169 5894 2028 113 0 15 chr9 36180642 36180916 -106090528 - AluSg SINE Alu -36 274 5 1569 208 7 91 chr9 36180922 36181147 -106090297 - L1MA6 LINE L1 -394 5906 5738 2497 70 0 10 chr9 36181147 36181461 -106089983 - AluY SINE Alu 0 311 1 1569 208 7 91 chr9 36181461 36181697 -106089747 - L1MA6 LINE L1 -562 5738 5484 410 117 17 0 chr9 36181722 36181782 -106089662 + U7 snRNA snRNA 2 62 -1 658 196 7 58 chr9 36181862 36182000 -106089444 - FLAM_A SINE Alu -2 131 1 209 245 0 0 chr9 36182033 36182082 -106089362 + L2 LINE L2 3264 3312 -1 2352 84 0 3 chr9 36182100 36182397 -106089047 - AluY SINE Alu -15 296 1 207 176 0 0 chr9 36183009 36183043 -106088401 + T-rich Low_complexity Low_complexity 4 37 0 2386 93 0 10 chr9 36183185 36183497 -106087947 + AluSx SINE Alu 1 309 -3 2276 106 7 0 chr9 36183708 36184011 -106087433 - AluSc SINE Alu -4 305 1 317 250 50 0 chr9 36184024 36184104 -106087340 - MER58 DNA MER1_type -1 2419 131 857 92 59 0 chr9 36184115 36184234 -106087210 - AluSq/x SINE Alu -186 126 1 1329 87 6 27 chr9 36184359 36184542 -106086902 - AluSp SINE Alu -12 301 123 948 52 9 0 chr9 36184551 36184666 -106086778 - AluSc SINE Alu -18 291 176 769 201 0 70 chr9 36184694 36184756 -106086688 + L1 LINE L1 3822 3887 -2259 2262 86 3 10 chr9 36184756 36185058 -106086386 + AluY SINE Alu 1 300 -11 769 201 0 70 chr9 36185058 36185194 -106086250 + L1 LINE L1 3887 4006 -2140 1640 172 38 14 chr9 36185194 36185484 -106085960 - AluJb SINE Alu -15 297 1 1197 150 35 9 chr9 36185491 36185717 -106085727 + L1 LINE L1 4119 4350 -1796 320 321 73 68 chr9 36185880 36186003 -106085441 - HAL1b LINE L1 -749 599 478 1548 190 20 27 chr9 36186003 36186298 -106085146 - AluJo SINE Alu -19 293 1 320 321 73 68 chr9 36186298 36186433 -106085011 - HAL1b LINE L1 -870 478 345 2342 99 3 10 chr9 36186433 36186747 -106084697 - AluSx SINE Alu 0 312 1 320 321 73 68 chr9 36186747 36187045 -106084399 - HAL1b LINE L1 -1003 345 39 1438 108 66 150 chr9 36187237 36187410 -106084034 - AluSx SINE Alu -6 306 173 2277 115 0 0 chr9 36187410 36187715 -106083729 - AluSx SINE Alu -7 305 1 1438 108 66 150 chr9 36187715 36187875 -106083569 - AluSx SINE Alu -139 173 1 2517 65 0 7 chr9 36187886 36188195 -106083249 - AluY SINE Alu -4 307 1 992 185 15 10 chr9 36188195 36188390 -106083054 - AluJb SINE Alu -12 300 105 2355 105 3 0 chr9 36188676 36188980 -106082464 + AluSq SINE Alu 1 305 -8 1590 128 0 4 chr9 36188989 36189215 -106082229 + AluSq SINE Alu 1 225 -88 742 95 19 0 chr9 36189215 36189320 -106082124 + AluSg/x SINE Alu 190 296 -14 1550 151 106 7 chr9 36189365 36189649 -106081795 + AluSx SINE Alu 1 312 0 1208 216 16 66 chr9 36189708 36190013 -106081431 + AluJb SINE Alu 1 290 -22 2455 71 7 0 chr9 36190021 36190318 -106081126 + AluSg SINE Alu 1 299 -11 1393 196 52 15 chr9 36190442 36190713 -106080731 + AluJb SINE Alu 1 281 -31 23 33 0 0 chr9 36190718 36190748 -106080696 + AT_rich Low_complexity Low_complexity 1 30 0 1774 202 19 60 chr9 36191027 36191508 -106079936 + MER65C LTR ERV1 1 461 0 449 236 111 14 chr9 36192131 36192275 -106079169 - L1MD3 LINE L1 -8 7987 7830 1254 170 9 106 chr9 36192417 36192746 -106078698 + AluSx SINE Alu 2 298 -4 308 77 0 0 chr9 36192747 36192786 -106078658 + Alu SINE Alu 246 284 -16 492 18 0 0 chr9 36192788 36192845 -106078599 + (CATA)n Simple_repeat Simple_repeat 4 60 0 812 163 15 0 chr9 36192845 36192980 -106078464 + AluSg/x SINE Alu 158 294 -16 984 93 16 0 chr9 36193000 36193129 -106078315 + AluJb SINE Alu 2 132 -180 21 0 0 0 chr9 36193157 36193178 -106078266 + AT_rich Low_complexity Low_complexity 1 21 0 607 134 104 75 chr9 36193359 36193493 -106077951 - FLAM_C SINE Alu -4 139 2 1626 178 15 0 chr9 36194285 36194555 -106076889 - AluJo SINE Alu -17 295 22 203 327 0 18 chr9 36194937 36194992 -106076452 + MIR SINE MIR 19 72 -136 325 298 10 10 chr9 36195191 36195295 -106076149 + MIR3 SINE MIR 3 106 -102 637 151 0 59 chr9 36195638 36195757 -106075687 - AluJ SINE Alu -12 300 189 803 148 111 0 chr9 36195758 36195893 -106075551 - AluJ SINE Alu -162 150 1 226 145 14 14 chr9 36197022 36197091 -106074353 + (TA)n Simple_repeat Simple_repeat 2 70 0 68 0 0 0 chr9 36197091 36197159 -106074285 + AT_rich Low_complexity Low_complexity 1 68 0 465 102 66 6 chr9 36197159 36197326 -106074118 + (TA)n Simple_repeat Simple_repeat 2 178 0 2127 136 7 0 chr9 36197326 36197621 -106073823 - AluSx SINE Alu -15 297 1 2235 110 0 3 chr9 36198502 36198803 -106072641 + AluSg SINE Alu 1 300 -10 1139 143 29 43 chr9 36199021 36199231 -106072213 - AluJb SINE Alu -21 291 85 2227 107 0 23 chr9 36200113 36200285 -106071159 - AluSg SINE Alu -8 302 139 2452 69 7 3 chr9 36200285 36200588 -106070856 - AluSp SINE Alu -9 304 1 2227 107 0 23 chr9 36200588 36200724 -106070720 - AluSg SINE Alu -171 139 1 2002 112 0 53 chr9 36201390 36201693 -106069751 - AluSx SINE Alu -25 287 1 352 266 52 39 chr9 36201696 36201759 -106069685 - L1ME LINE L1 -459 5662 5601 2194 124 0 3 chr9 36201759 36202058 -106069386 + AluSx SINE Alu 1 298 -14 352 266 52 39 chr9 36202058 36202148 -106069296 - L1ME LINE L1 -520 5601 5507 2542 58 0 0 chr9 36203196 36203488 -106067956 + AluY SINE Alu 2 293 -18 1436 163 17 57 chr9 36203488 36203788 -106067656 - AluJo SINE Alu -23 289 2 1233 189 42 77 chr9 36203793 36203951 -106067493 - AluJo SINE Alu -10 302 140 2487 57 0 7 chr9 36203951 36204251 -106067193 - AluY SINE Alu -13 298 1 1233 189 42 77 chr9 36204251 36204296 -106067148 - AluJo SINE Alu -172 140 95 2187 114 3 10 chr9 36204296 36204602 -106066842 + AluSx SINE Alu 1 304 -8 1233 189 42 77 chr9 36204602 36204710 -106066734 - AluJo SINE Alu -217 95 1 2069 116 3 3 chr9 36204757 36205042 -106066402 - AluSq SINE Alu -28 285 1 1699 174 0 41 chr9 36205094 36205236 -106066208 + AluJb SINE Alu 1 147 -165 2329 110 7 0 chr9 36205236 36205544 -106065900 + AluSx SINE Alu 1 310 -2 1699 174 0 41 chr9 36205544 36205717 -106065727 + AluJb SINE Alu 147 303 -9 2674 54 0 6 chr9 36205771 36206084 -106065360 + AluY SINE Alu 1 311 0 2603 54 0 22 chr9 36206094 36206411 -106065033 + AluY SINE Alu 1 310 -1 2583 54 0 0 chr9 36206417 36206711 -106064733 + AluY SINE Alu 1 294 -17 819 150 0 0 chr9 36206798 36206918 -106064526 + FLAM_C SINE Alu 1 120 -23 602 272 114 33 chr9 36206922 36207282 -106064162 + L1ME4a LINE L1 5513 5901 -220 2528 57 0 7 chr9 36207359 36207658 -106063786 + AluSp SINE Alu 1 297 -16 2223 98 3 0 chr9 36207754 36208041 -106063403 + AluSg SINE Alu 7 294 -16 551 130 94 94 chr9 36208190 36208328 -106063116 + MLT1B LTR MaLR 4 141 -249 2153 123 3 0 chr9 36208346 36208646 -106062798 - AluSx SINE Alu -11 301 1 21 0 0 0 chr9 36208646 36208667 -106062777 + AT_rich Low_complexity Low_complexity 1 21 0 1874 99 0 8 chr9 36208672 36208914 -106062530 - AluSc SINE Alu -69 240 1 916 120 8 0 chr9 36208920 36209045 -106062399 - FLAM_C SINE Alu -17 126 1 607 155 0 78 chr9 36209081 36209210 -106062234 + MER2 DNA MER2_type 2 120 -225 2082 140 0 6 chr9 36209212 36209526 -106061918 - AluSx SINE Alu 0 312 1 367 313 0 52 chr9 36209612 36209671 -106061773 + L2 LINE L2 3141 3202 -70 800 192 0 0 chr9 36209671 36209801 -106061643 - FLAM_C SINE Alu -3 130 1 367 313 0 52 chr9 36209801 36209875 -106061569 + L2 LINE L2 3202 3267 -5 586 153 31 0 chr9 36210192 36210290 -106061154 + AluJb SINE Alu 54 154 -158 2203 64 39 4 chr9 36210741 36211021 -106060423 - AluY SINE Alu -21 290 1 723 104 59 82 chr9 36211273 36211341 -106060103 + AluJo/FLAM SINE Alu 1 66 -236 2339 100 0 0 chr9 36211341 36211640 -106059804 - AluSc SINE Alu -10 299 1 723 104 59 82 chr9 36211640 36211706 -106059738 + AluJo/FLAM SINE Alu 66 132 -170 180 213 21 0 chr9 36211857 36211904 -106059540 - MIR SINE MIR -111 151 104 2482 82 3 0 chr9 36212237 36212540 -106058904 + AluSg SINE Alu 1 304 -6 2334 82 0 10 chr9 36212543 36212849 -106058595 + AluY SINE Alu 1 303 -8 2116 125 6 10 chr9 36213068 36213381 -106058063 + AluSx SINE Alu 1 312 0 950 164 14 0 chr9 36213480 36213626 -106057818 + AluSq/x SINE Alu 2 149 -164 1373 195 84 3 chr9 36213659 36213764 -106057680 + AluJb SINE Alu 3 98 -214 180 0 0 0 chr9 36213764 36213784 -106057660 + (TA)n Simple_repeat Simple_repeat 1 20 0 1373 195 84 3 chr9 36213784 36213965 -106057479 + AluJb SINE Alu 98 312 0 415 202 95 0 chr9 36213987 36214071 -106057373 + MER63 DNA MER1_type 655 746 -315 1932 148 3 0 chr9 36214078 36214395 -106057049 + AluSx SINE Alu 1 318 0 517 200 27 0 chr9 36214481 36214591 -106056853 + MIR SINE MIR 94 206 -56 436 266 8 24 chr9 36214639 36214763 -106056681 + MIR3 SINE MIR 66 187 -21 1943 92 75 58 chr9 36214928 36215221 -106056223 + AluSx SINE Alu 1 298 -14 2312 102 7 7 chr9 36215243 36215546 -106055898 + AluSx SINE Alu 1 303 -9 371 254 73 0 chr9 36216175 36216328 -106055116 - MIR3 SINE MIR -6 202 40 229 185 259 0 chr9 36216346 36216400 -106055044 - LTR33 LTR ERVL -2 519 452 2243 97 10 0 chr9 36216579 36216868 -106054576 - AluSx SINE Alu -20 292 1 291 263 256 8 chr9 36216877 36217010 -106054434 - LTR33 LTR ERVL -343 178 13 261 0 0 0 chr9 36217030 36217059 -106054385 + (TTA)n Simple_repeat Simple_repeat 2 30 0 500 130 0 50 chr9 36217085 36217185 -106054259 + AluJ/FRAM SINE Alu 217 311 -1 184 363 33 11 chr9 36218198 36218289 -106053155 - MIR SINE MIR -150 112 20 1507 194 21 21 chr9 36218328 36218617 -106052827 - AluJo SINE Alu -19 293 5 1299 157 4 22 chr9 36218842 36219071 -106052373 + AluJb SINE Alu 75 299 -13 180 304 0 0 chr9 36219342 36219388 -106052056 - L2 LINE L2 -223 3049 3004 2490 59 3 34 chr9 36219491 36219811 -106051633 - AluY SINE Alu 0 311 2 1698 178 31 0 chr9 36219945 36220237 -106051207 + AluJb SINE Alu 1 301 -11 598 109 36 0 chr9 36220336 36220473 -106050971 + (TA)n Simple_repeat Simple_repeat 2 143 0 1334 202 23 23 chr9 36220555 36220812 -106050632 - AluJb SINE Alu -55 257 1 243 239 0 0 chr9 36220840 36220886 -106050558 + Alu SINE Alu 57 102 -200 270 138 0 0 chr9 36220894 36220952 -106050492 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 2227 107 0 23 chr9 36221964 36222136 -106049308 - AluSg SINE Alu -8 302 139 2452 69 7 3 chr9 36222136 36222439 -106049005 - AluSp SINE Alu -9 304 1 2227 107 0 23 chr9 36222439 36222575 -106048869 - AluSg SINE Alu -171 139 1 2054 102 0 53 chr9 36223241 36223544 -106047900 - AluSx SINE Alu -25 287 1 2775 157 25 50 chr9 36223544 36223908 -106047536 - L1MA4A LINE L1 -230 6073 5728 1099 126 0 16 chr9 36223908 36224089 -106047355 + L1MA4A LINE L1 6124 6302 -1 2775 157 25 50 chr9 36224089 36224322 -106047122 - L1MA4A LINE L1 -575 5728 5491 588 200 0 0 chr9 36224341 36224436 -106047008 - FRAM SINE Alu -62 114 20 1095 133 45 27 chr9 36224436 36224590 -106046854 - L1MA4A LINE L1 -746 5400 5331 1619 157 10 64 chr9 36224590 36224903 -106046541 - AluJo SINE Alu -16 296 1 1095 133 45 27 chr9 36224903 36225017 -106046427 - L1MA4A LINE L1 -815 5331 5221 1880 151 28 0 chr9 36225080 36225365 -106046079 + AluSx SINE Alu 1 293 -19 2142 114 13 7 chr9 36226106 36226413 -106045031 + AluSg SINE Alu 1 309 -1 311 202 12 0 chr9 36227117 36227201 -106044243 + CT-rich Low_complexity Low_complexity 3 87 0 1370 191 116 4 chr9 36227358 36227625 -106043819 + AluJo SINE Alu 2 298 -14 2154 103 0 27 chr9 36227699 36228000 -106043444 + AluSx SINE Alu 1 293 -19 900 125 125 12 chr9 36228535 36228680 -106042764 - AluSc SINE Alu -13 296 169 1953 141 7 0 chr9 36228680 36228977 -106042467 - AluSx SINE Alu -13 299 1 2076 123 7 13 chr9 36228977 36229285 -106042159 - AluSx SINE Alu -6 306 1 900 125 125 12 chr9 36229285 36229298 -106042146 - AluSc SINE Alu -139 170 119 2288 115 0 0 chr9 36229426 36229731 -106041713 - AluSx SINE Alu -7 305 1 638 93 0 0 chr9 36229821 36229907 -106041537 - AluSq SINE Alu -17 296 211 1089 91 0 7 chr9 36229907 36230050 -106041394 - AluSq SINE Alu -162 150 9 1875 148 7 13 chr9 36230152 36230457 -106040987 - AluSx SINE Alu -9 303 1 731 242 129 23 chr9 36230482 36230784 -106040660 - L1MC4 LINE L1 -11 8031 7698 2239 109 7 0 chr9 36230784 36231077 -106040367 - AluSx SINE Alu -17 295 1 1457 120 0 14 chr9 36232876 36233093 -106038351 - AluSq SINE Alu -6 307 94 1982 144 3 0 chr9 36233675 36233966 -106037478 + AluSp SINE Alu 15 306 -7 708 137 111 0 chr9 36234021 36234138 -106037306 + FLAM_C SINE Alu 2 131 -12 784 158 0 43 chr9 36234209 36234348 -106037096 + AluJo SINE Alu 3 135 -177 2059 140 3 3 chr9 36234372 36234672 -106036772 + AluSx SINE Alu 3 302 -10 297 126 97 97 chr9 36234693 36234782 -106036662 - L1MD3 LINE L1 -16 7979 7888 2258 109 7 0 chr9 36234782 36235085 -106036359 - AluSc SINE Alu -4 305 1 297 126 97 97 chr9 36235085 36235098 -106036346 - L1MD3 LINE L1 -106 7889 7877 317 250 50 0 chr9 36235098 36235178 -106036266 - MER58 DNA MER1_type -1 2419 131 857 92 59 0 chr9 36235189 36235308 -106036136 - AluSq/x SINE Alu -186 126 1 1329 87 6 27 chr9 36235433 36235616 -106035828 - AluSp SINE Alu -12 301 123 948 52 9 0 chr9 36235625 36235740 -106035704 - AluSc SINE Alu -18 291 176 1197 208 210 24 chr9 36235768 36235837 -106035607 + L1 LINE L1 3822 3877 -2269 1656 128 17 37 chr9 36235837 36236134 -106035310 + AluY SINE Alu 10 300 -11 1197 208 210 24 chr9 36236134 36236270 -106035174 + L1 LINE L1 3877 3986 -2160 1640 172 38 14 chr9 36236270 36236560 -106034884 - AluJb SINE Alu -15 297 1 1197 208 210 24 chr9 36236560 36236793 -106034651 + L1 LINE L1 3986 4350 -1796 320 321 73 68 chr9 36236956 36237079 -106034365 - HAL1b LINE L1 -749 599 478 1548 190 20 27 chr9 36237079 36237374 -106034070 - AluJo SINE Alu -19 293 1 320 321 73 68 chr9 36237374 36237509 -106033935 - HAL1b LINE L1 -870 478 345 2342 99 3 10 chr9 36237509 36237823 -106033621 - AluSx SINE Alu 0 312 1 320 321 73 68 chr9 36237823 36238121 -106033323 - HAL1b LINE L1 -1003 345 39 1438 108 66 150 chr9 36238313 36238486 -106032958 - AluSx SINE Alu -6 306 173 2277 115 0 0 chr9 36238486 36238791 -106032653 - AluSx SINE Alu -7 305 1 1438 108 66 150 chr9 36238791 36238951 -106032493 - AluSx SINE Alu -139 173 1 2266 96 0 19 chr9 36238962 36239275 -106032169 - AluY SINE Alu -4 307 1 770 151 0 50 chr9 36239277 36239416 -106032028 - AluJo/FLAM SINE Alu -170 132 1 1423 117 5 10 chr9 36239447 36239652 -106031792 - AluSx SINE Alu -108 204 1 783 211 119 23 chr9 36239991 36240209 -106031235 + MIR SINE MIR 1 239 -23 727 179 0 22 chr9 36240973 36241107 -106030337 + FLAM_C SINE Alu 3 133 0 2201 111 0 10 chr9 36241852 36242149 -106029295 - AluSx SINE Alu -18 294 1 2069 83 62 0 chr9 36242494 36242770 -106028674 - AluSp SINE Alu -16 297 5 2258 103 3 0 chr9 36242786 36243087 -106028357 - AluY SINE Alu -9 302 1 2253 90 17 3 chr9 36243607 36243906 -106027538 - AluSc SINE Alu -6 303 1 2146 125 10 10 chr9 36244113 36244417 -106027027 + AluSx SINE Alu 1 304 -8 566 184 18 9 chr9 36244417 36244526 -106026918 - FLAM_A SINE Alu -32 110 1 2099 135 0 0 chr9 36244585 36244888 -106026556 - AluSq SINE Alu -10 303 1 2250 120 0 0 chr9 36244917 36245218 -106026226 + AluSx SINE Alu 1 301 -11 2195 75 0 11 chr9 36245910 36246191 -106025253 + AluY SINE Alu 22 299 -12 1312 145 5 5 chr9 36246226 36246433 -106025011 + AluSx SINE Alu 1 207 -105 250 180 0 33 chr9 36246653 36246714 -106024730 - FAM SINE Alu 0 179 121 494 293 41 26 chr9 36247107 36247377 -106024067 - AluSx SINE Alu -22 290 17 252 0 0 0 chr9 36247591 36247619 -106023825 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 670 164 57 0 chr9 36247797 36247919 -106023525 + FLAM_A SINE Alu 10 138 -4 1904 149 20 3 chr9 36248141 36248436 -106023008 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 36248497 36248522 -106022922 + (CGG)n Simple_repeat Simple_repeat 3 27 0 198 0 0 0 chr9 36252834 36252856 -106018588 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 267 267 13 0 chr9 36254124 36254199 -106017245 + MIR SINE MIR 79 154 -108 254 284 68 14 chr9 36254752 36254826 -106016618 - Charlie8 DNA MER1_type -2190 227 150 2286 90 10 7 chr9 36254829 36255130 -106016314 + AluSx SINE Alu 2 303 -9 2332 102 0 13 chr9 36255632 36255946 -106015498 - AluSg SINE Alu 0 310 1 2108 198 78 36 chr9 36256070 36256428 -106015016 - MER90 LTR ERV1 0 575 233 2211 112 0 0 chr9 36256428 36256737 -106014707 - AluSx SINE Alu 0 309 1 2108 198 78 36 chr9 36256737 36256912 -106014532 - MER90 LTR ERV1 -342 233 15 2260 114 3 0 chr9 36256912 36257220 -106014224 - AluSx SINE Alu -3 309 1 2108 198 78 36 chr9 36257220 36257236 -106014208 - MER90 LTR ERV1 -560 15 1 696 208 8 0 chr9 36257249 36257374 -106014070 - AluJo/FRAM SINE Alu -50 262 137 1670 89 5 5 chr9 36257375 36257599 -106013845 - AluSq SINE Alu 0 313 90 1799 178 3 16 chr9 36257603 36257906 -106013538 + AluJb SINE Alu 1 299 -13 250 182 45 15 chr9 36257935 36258001 -106013443 + L1ME LINE L1 5592 5659 -462 2110 126 0 3 chr9 36258616 36258927 -106012517 - AluSx SINE Alu 0 310 1 2052 130 0 32 chr9 36259175 36259490 -106011954 + AluSx SINE Alu 1 305 -7 2417 86 3 0 chr9 36259671 36259975 -106011469 - AluSp SINE Alu -7 306 2 1310 70 0 0 chr9 36260159 36260317 -106011127 + AluY SINE Alu 1 158 -153 2062 113 11 0 chr9 36260625 36260909 -106010535 - AluSx SINE Alu -25 287 1 26 0 0 0 chr9 36260911 36260937 -106010507 + AT_rich Low_complexity Low_complexity 1 26 0 1887 141 21 14 chr9 36260937 36261220 -106010224 - AluSx SINE Alu -27 285 1 263 27 0 27 chr9 36261222 36261259 -106010185 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1926 90 60 0 chr9 36261259 36261527 -106009917 - AluSx SINE Alu -28 284 1 335 338 15 0 chr9 36261586 36261722 -106009722 + L1ME LINE L1 5680 5817 -304 567 205 8 31 chr9 36261737 36261864 -106009580 + FLAM_C SINE Alu 6 129 -14 2420 53 0 30 chr9 36261999 36262299 -106009145 - AluSc SINE Alu -18 291 1 962 206 0 0 chr9 36262612 36262796 -106008648 - FRAM SINE Alu 0 176 1 1046 101 0 0 chr9 36263190 36263328 -106008116 - AluSq/x SINE Alu -174 138 1 951 100 87 0 chr9 36263329 36263479 -106007965 - L1MA6 LINE L1 -351 5949 5787 2284 75 0 3 chr9 36263489 36263782 -106007662 - AluY SINE Alu -19 292 1 314 150 12 124 chr9 36263782 36263819 -106007625 + MSTB LTR MaLR 361 380 -46 1248 56 56 0 chr9 36263819 36263980 -106007464 - L1PA11 LINE L1 0 6174 6005 314 150 12 124 chr9 36263980 36264023 -106007421 + MSTB LTR MaLR 380 426 0 1140 139 0 0 chr9 36264109 36264281 -106007163 + AluJb SINE Alu 134 305 -7 3209 308 80 38 chr9 36264380 36264638 -106006806 + HERV16 LTR ERVL 827 1073 -3923 1820 112 16 70 chr9 36264638 36264759 -106006685 + AluSx SINE Alu 11 137 -175 2302 84 0 10 chr9 36264759 36265070 -106006374 + AluY SINE Alu 1 308 -3 1820 112 16 70 chr9 36265070 36265087 -106006357 + AluSx SINE Alu 137 153 -159 1902 142 0 19 chr9 36265087 36265405 -106006039 + AluSp SINE Alu 1 312 -1 1820 112 16 70 chr9 36265405 36265577 -106005867 + AluSx SINE Alu 153 305 -7 2184 103 17 0 chr9 36265579 36265880 -106005564 + AluSq SINE Alu 1 306 -7 3209 308 80 38 chr9 36265880 36266037 -106005407 + HERV16 LTR ERVL 1073 1222 -3774 1646 177 0 17 chr9 36266037 36266336 -106005108 + AluJb SINE Alu 1 294 -18 3209 308 80 38 chr9 36266336 36266979 -106004465 + HERV16 LTR ERVL 1222 1836 -3160 2007 110 0 7 chr9 36266979 36267306 -106004138 + AluSc SINE Alu 1 325 0 3209 308 80 38 chr9 36267306 36267600 -106003844 + HERV16 LTR ERVL 1836 2116 -2880 2016 63 0 22 chr9 36267600 36267871 -106003573 + AluY SINE Alu 44 308 -3 3209 308 80 38 chr9 36267871 36268207 -106003237 + HERV16 LTR ERVL 2116 2678 -2318 948 123 53 47 chr9 36268213 36268384 -106003060 + AluJb SINE Alu 12 183 -129 754 193 113 0 chr9 36268559 36268709 -106002735 + AluSg/x SINE Alu 135 301 -11 2037 117 0 3 chr9 36268713 36269003 -106002441 + AluSq SINE Alu 1 289 -24 2221 89 3 0 chr9 36269156 36269448 -106001996 - AluSp SINE Alu -20 293 1 2140 110 7 0 chr9 36269452 36269751 -106001693 - AluSx SINE Alu -11 301 1 1995 115 0 30 chr9 36269908 36270213 -106001231 - AluSx SINE Alu -16 296 1 377 248 51 64 chr9 36270664 36270782 -106000662 - L2 LINE L2 -181 3091 2974 2217 114 0 0 chr9 36270782 36271090 -106000354 + AluSg SINE Alu 1 308 -2 377 248 51 64 chr9 36271090 36271128 -106000316 - L2 LINE L2 -298 2974 2937 575 131 0 0 chr9 36271254 36271366 -106000078 - AluJ SINE Alu 0 310 199 432 239 11 0 chr9 36271365 36271453 -105999991 - AluJ SINE Alu -193 119 31 * 246 313 222 16 chr9 36271461 36271889 -105999555 - L2 LINE L2 -508 2806 2291 319 264 109 36 chr9 36271973 36272083 -105999361 - L1MCa LINE L1 -4311 2115 1998 300 239 54 33 chr9 36273062 36273110 -105998334 - L1MC4 LINE L1 -1339 6703 6658 348 205 94 77 chr9 36273110 36273227 -105998217 - FLAM_A SINE Alu -11 122 4 300 239 54 33 chr9 36273227 36273253 -105998191 - L1MC4 LINE L1 -1384 6658 6634 1893 109 20 26 chr9 36273253 36273557 -105997887 - AluSx SINE Alu -10 302 1 300 239 54 33 chr9 36273557 36273573 -105997871 - L1MC4 LINE L1 -1408 6634 6610 292 279 43 57 chr9 36273682 36273822 -105997622 + L2 LINE L2 3175 3312 -1 196 234 43 106 chr9 36273912 36274006 -105997438 - L2 LINE L2 -338 2975 2888 1060 238 75 72 chr9 36274951 36275312 -105996132 - L2 LINE L2 0 3313 2952 842 180 0 2 chr9 36275724 36275953 -105995491 + AluJb SINE Alu 1 279 -33 237 248 178 10 chr9 36275963 36276019 -105995425 - L1ME4a LINE L1 -1 6120 6075 2071 110 7 3 chr9 36276019 36276312 -105995132 + AluSg SINE Alu 1 295 -10 191 35 0 35 chr9 36276312 36276341 -105995103 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 237 248 178 10 chr9 36276346 36276390 -105995054 - L1ME4a LINE L1 -46 6075 6003 961 173 0 17 chr9 36276390 36276569 -105994875 - FRAM SINE Alu -2 174 1 928 164 0 12 chr9 36276624 36276789 -105994655 - FRAM SINE Alu -13 163 1 1893 103 4 0 chr9 36276799 36277060 -105994384 - AluSx SINE Alu -15 297 36 2048 122 0 7 chr9 36277129 36277433 -105994011 - AluSx SINE Alu -10 302 1 205 325 138 42 chr9 36277490 36277730 -105993714 + L2 LINE L2 2677 2939 -375 2009 106 44 0 chr9 36277787 36278080 -105993364 - AluSx SINE Alu -6 306 1 1549 149 52 4 chr9 36278199 36278495 -105992949 - AluJo SINE Alu 0 309 1 1973 115 13 0 chr9 36278633 36278937 -105992507 - AluSg SINE Alu -2 308 1 1664 142 0 57 chr9 36278942 36279273 -105992171 - AluJb SINE Alu 0 312 1 1958 106 40 10 chr9 36279385 36279686 -105991758 - AluSg SINE Alu 0 310 1 1057 170 53 6 chr9 36279769 36280016 -105991428 - AluJb SINE Alu -15 297 1 1740 145 3 3 chr9 36280038 36280320 -105991124 - AluJb SINE Alu -16 296 15 2081 116 3 16 chr9 36280375 36280686 -105990758 + AluSp SINE Alu 1 307 -6 1571 179 19 32 chr9 36280694 36281002 -105990442 + AluJo SINE Alu 1 304 -8 1456 182 0 30 chr9 36281130 36281266 -105990178 + AluJo SINE Alu 3 142 -170 1535 195 0 16 chr9 36281266 36281569 -105989875 + AluJb SINE Alu 1 298 -14 2418 63 0 0 chr9 36281569 36281867 -105989577 + AluY SINE Alu 1 299 -12 1456 182 0 30 chr9 36281867 36282026 -105989418 + AluJo SINE Alu 140 290 -22 2202 106 0 10 chr9 36282174 36282486 -105988958 + AluSg SINE Alu 1 309 -1 2090 103 17 0 chr9 36282539 36282831 -105988613 + AluSx SINE Alu 6 302 -10 1209 99 0 0 chr9 36282831 36282993 -105988451 + AluSg/x SINE Alu 134 295 -17 1947 136 3 7 chr9 36282996 36283305 -105988139 + AluSx SINE Alu 1 308 -4 1933 135 3 7 chr9 36284111 36284415 -105987029 - AluSx SINE Alu -9 303 1 1852 128 27 14 chr9 36284512 36284809 -105986635 + AluSg SINE Alu 3 303 -7 1197 149 0 28 chr9 36285453 36285667 -105985777 - AluSg/x SINE Alu -21 291 84 1505 178 14 4 chr9 36285692 36285837 -105985607 - AluJo SINE Alu -33 279 128 194 0 39 0 chr9 36285837 36285863 -105985581 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1505 178 14 4 chr9 36285863 36285993 -105985451 - AluJo SINE Alu -184 128 1 1428 155 40 40 chr9 36286340 36286382 -105985062 + MER46B DNA MER2_type 1 42 -2689 1807 160 0 26 chr9 36286382 36286694 -105984750 + AluJb SINE Alu 5 308 -4 2264 80 0 0 chr9 36286694 36286983 -105984461 + AluSc SINE Alu 1 289 -20 1428 155 40 40 chr9 36286983 36287235 -105984209 + MER46B DNA MER2_type 40 171 -65 2247 86 0 0 chr9 36287237 36287527 -105983917 + AluY SINE Alu 1 290 -21 1868 119 27 14 chr9 36287698 36287991 -105983453 + AluSg SINE Alu 7 303 -7 1203 150 0 24 chr9 36288635 36288848 -105982596 - AluSg/x SINE Alu -21 291 84 1505 178 14 4 chr9 36288873 36289018 -105982426 - AluJo SINE Alu -33 279 128 194 0 39 0 chr9 36289018 36289044 -105982400 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1505 178 14 4 chr9 36289044 36289174 -105982270 - AluJo SINE Alu -184 128 1 1782 164 0 26 chr9 36289563 36289875 -105981569 + AluJb SINE Alu 5 308 -4 1743 98 4 0 chr9 36289875 36290110 -105981334 + AluSq SINE Alu 1 236 -77 880 131 6 120 chr9 36290110 36290189 -105981255 - AluSx SINE Alu -150 162 114 1572 105 9 0 chr9 36290189 36290417 -105981027 - AluSq SINE Alu -14 299 70 880 131 6 120 chr9 36290417 36290520 -105980924 - AluSx SINE Alu -198 114 1 2078 112 3 13 chr9 36290524 36290838 -105980606 - AluY SINE Alu 0 311 1 1390 151 6 70 chr9 36290843 36291008 -105980436 - AluJb SINE Alu -20 292 118 183 42 0 0 chr9 36291008 36291032 -105980412 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2269 49 0 14 chr9 36291032 36291319 -105980125 - AluY SINE Alu -28 283 1 1390 151 6 70 chr9 36291319 36291464 -105979980 - AluJb SINE Alu -192 120 1 2163 103 3 0 chr9 36291474 36291775 -105979669 - AluSg SINE Alu -8 302 1 867 147 0 22 chr9 36291793 36291929 -105979515 - FLAM_C SINE Alu 0 133 1 2054 104 13 7 chr9 36291939 36292237 -105979207 - AluSq SINE Alu -13 300 1 467 202 55 9 chr9 36292238 36292347 -105979097 - L1M4 LINE L1 -491 5693 5580 813 218 31 35 chr9 36292350 36292579 -105978865 - AluJo SINE Alu -13 299 72 241 157 235 0 chr9 36292579 36292630 -105978814 - Charlie3 DNA MER1_type -2641 69 7 2194 106 0 10 chr9 36292803 36293115 -105978329 + AluSg SINE Alu 1 309 -1 2090 103 17 0 chr9 36293168 36293460 -105977984 + AluSx SINE Alu 6 302 -10 1209 99 0 0 chr9 36293460 36293622 -105977822 + AluSg/x SINE Alu 132 293 -17 1947 136 3 7 chr9 36293625 36293934 -105977510 + AluSx SINE Alu 1 308 -4 1933 135 3 7 chr9 36294740 36295044 -105976400 - AluSx SINE Alu -9 303 1 277 276 58 45 chr9 36295314 36295379 -105976065 - L1ME LINE L1 -457 5664 5601 1940 137 0 7 chr9 36295379 36295679 -105975765 + AluSx SINE Alu 1 298 -14 277 276 58 45 chr9 36295679 36295769 -105975675 - L1ME LINE L1 -520 5601 5507 2383 60 3 0 chr9 36296817 36297117 -105974327 + AluY SINE Alu 2 302 -9 489 130 0 0 chr9 36297385 36297454 -105973990 - AluJ/FLAM SINE Alu -243 69 1 635 299 68 40 chr9 36298004 36298329 -105973115 - L2 LINE L2 -2 3311 2978 1407 162 26 55 chr9 36298691 36298875 -105972569 - AluJb SINE Alu -13 299 126 1888 157 0 3 chr9 36298875 36299188 -105972256 - AluSx SINE Alu 0 312 1 1407 162 26 55 chr9 36299188 36299311 -105972133 - AluJb SINE Alu -186 126 1 491 164 8 90 chr9 36299822 36299944 -105971500 - Tigger1 DNA MER2_type -143 2275 2164 529 163 22 0 chr9 36299946 36300038 -105971406 - L1MA4A LINE L1 -153 6150 6057 1298 168 0 9 chr9 36300039 36300271 -105971173 + AluSg/x SINE Alu 76 305 -5 1718 159 4 0 chr9 36300300 36300577 -105970867 - AluSx SINE Alu -34 278 1 2727 159 25 50 chr9 36300577 36300941 -105970503 - L1MA4A LINE L1 -230 6073 5728 1083 126 0 16 chr9 36300941 36301122 -105970322 + L1MA4A LINE L1 6124 6302 -1 2727 159 25 50 chr9 36301122 36301355 -105970089 - L1MA4A LINE L1 -575 5728 5491 589 200 0 0 chr9 36301374 36301469 -105969975 - FRAM SINE Alu -62 114 20 1075 133 45 27 chr9 36301469 36301623 -105969821 - L1MA4A LINE L1 -746 5400 5331 1513 163 6 54 chr9 36301623 36301936 -105969508 - AluJo SINE Alu -14 298 1 1075 133 45 27 chr9 36301936 36302050 -105969394 - L1MA4A LINE L1 -815 5331 5221 1782 147 28 0 chr9 36302113 36302398 -105969046 + AluSx SINE Alu 1 293 -19 2048 111 13 7 chr9 36303139 36303446 -105967998 + AluSg SINE Alu 1 309 -1 713 137 0 14 chr9 36304435 36304581 -105966863 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 243 239 0 0 chr9 36304589 36304635 -105966809 - Alu SINE Alu -200 102 57 1262 220 8 0 chr9 36304663 36304918 -105966526 + AluJb SINE Alu 1 257 -55 214 115 39 0 chr9 36305000 36305052 -105966392 + (TA)n Simple_repeat Simple_repeat 2 55 0 324 212 40 81 chr9 36305056 36305155 -105966289 + L1MC4 LINE L1 6613 6707 -1335 * 388 248 12 85 chr9 36305081 36305272 -105966172 - L1MC4 LINE L1 -1323 6719 6593 1586 178 31 0 chr9 36305351 36305643 -105965801 - AluJb SINE Alu -11 301 1 2431 48 3 19 chr9 36305777 36306092 -105965352 + AluY SINE Alu 2 311 0 1352 91 0 25 chr9 36306224 36306423 -105965021 - AluSg/x SINE Alu -18 292 99 2009 79 50 4 chr9 36306434 36306712 -105964732 - AluSc SINE Alu -18 291 1 1486 97 5 5 chr9 36306717 36306933 -105964511 - AluSp SINE Alu -11 302 87 1327 213 11 11 chr9 36307063 36307349 -105964095 - AluJo SINE Alu -18 294 9 1982 107 0 28 chr9 36307509 36307822 -105963622 - AluY SINE Alu 0 305 1 751 143 0 45 chr9 36307927 36308060 -105963384 - FLAM_C SINE Alu -5 128 2 896 150 0 14 chr9 36308274 36308421 -105963023 - AluSg/x SINE Alu -8 304 160 1412 138 5 13 chr9 36308421 36308645 -105962799 + AluSc SINE Alu 72 293 -16 25 0 0 0 chr9 36308946 36308971 -105962473 + AT_rich Low_complexity Low_complexity 1 25 0 2066 84 0 0 chr9 36308975 36309248 -105962196 + AluSg SINE Alu 1 273 -37 325 86 35 0 chr9 36309356 36309414 -105962030 + GA-rich Low_complexity Low_complexity 1 60 0 335 228 88 35 chr9 36309416 36309530 -105961914 + L1MC4a LINE L1 5974 6093 -1715 236 149 21 0 chr9 36309541 36309588 -105961856 + GA-rich Low_complexity Low_complexity 2 49 0 1441 185 7 30 chr9 36309975 36310277 -105961167 + AluJb SINE Alu 1 295 -17 502 143 114 32 chr9 36310293 36310459 -105960985 + Tigger1 DNA MER2_type 2182 2418 0 2119 109 0 0 chr9 36311512 36311814 -105959630 + AluSc SINE Alu 1 302 -7 1819 158 10 7 chr9 36311927 36312237 -105959207 + AluJb SINE Alu 1 311 -1 2247 185 109 4 chr9 36312292 36312817 -105958627 + L1MB7 LINE L1 5502 6081 -103 878 130 0 23 chr9 36313265 36313396 -105958048 + AluJo SINE Alu 1 128 -174 917 175 0 41 chr9 36314464 36314635 -105956809 + AluJo SINE Alu 137 300 -12 2170 90 20 7 chr9 36314697 36314997 -105956447 + AluY SINE Alu 1 304 -7 189 0 0 0 chr9 36315136 36315157 -105956287 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 576 336 32 7 chr9 36315219 36315496 -105955948 - L1MC4a LINE L1 -1961 5847 5564 241 138 0 138 chr9 36316001 36316066 -105955378 - MER58 DNA MER1_type 0 2420 2365 603 128 59 0 chr9 36316067 36316169 -105955275 - FLAM_C SINE Alu -35 108 1 1327 183 27 84 chr9 36316338 36316672 -105954772 + MER68 LTR ERV1 1 315 -247 1721 171 3 13 chr9 36317020 36317324 -105954120 + AluJb SINE Alu 1 301 -11 535 263 8 8 chr9 36317346 36317479 -105953965 + FLAM_C SINE Alu 1 133 0 2190 86 0 56 chr9 36318348 36318694 -105952750 + AluY SINE Alu 1 311 0 2140 99 3 3 chr9 36318901 36319183 -105952261 + AluSx SINE Alu 1 282 -30 2433 58 13 26 chr9 36319539 36319851 -105951593 - AluY SINE Alu -3 308 1 230 233 0 0 chr9 36320369 36320412 -105951032 + (CA)n Simple_repeat Simple_repeat 2 44 0 882 149 134 89 chr9 36320524 36320793 -105950651 - AluJo SINE Alu -26 286 6 2439 97 6 0 chr9 36320816 36321127 -105950317 - AluSq SINE Alu 0 313 1 1750 156 30 27 chr9 36322348 36322649 -105948795 - AluJo SINE Alu -10 302 1 2147 135 0 0 chr9 36323390 36323687 -105947757 - AluSx SINE Alu -15 297 1 288 0 0 0 chr9 36323750 36323782 -105947662 + (CA)n Simple_repeat Simple_repeat 2 33 0 2478 75 0 3 chr9 36324719 36325026 -105946418 + AluSg SINE Alu 1 306 -4 2322 92 10 3 chr9 36325027 36325332 -105946112 + AluSp SINE Alu 1 307 -6 1872 158 0 32 chr9 36325798 36326109 -105945335 - AluSx SINE Alu -11 301 1 1407 180 107 0 chr9 36326316 36326588 -105944856 + AluJo SINE Alu 1 301 -11 26 0 0 0 chr9 36326706 36326732 -105944712 + AT_rich Low_complexity Low_complexity 1 26 0 662 273 19 42 chr9 36326743 36327053 -105944391 - L1ME1 LINE L1 -22 6140 5838 1588 188 3 29 chr9 36327434 36327742 -105943702 - AluJb SINE Alu -12 300 1 2107 121 14 0 chr9 36327898 36328187 -105943257 - AluSq SINE Alu -20 293 1 21 0 0 0 chr9 36328187 36328208 -105943236 + AT_rich Low_complexity Low_complexity 1 21 0 578 196 8 53 chr9 36328214 36328347 -105943097 + FLAM_A SINE Alu 1 127 -6 2111 110 7 20 chr9 36328347 36328646 -105942798 + AluSx SINE Alu 1 295 -17 1321 196 58 31 chr9 36329419 36329710 -105941734 - AluJo SINE Alu -13 299 1 2150 128 3 16 chr9 36329974 36330280 -105941164 + AluSq SINE Alu 1 302 -11 22 56 0 0 chr9 36331690 36331726 -105939718 + AT_rich Low_complexity Low_complexity 1 36 0 2258 93 7 0 chr9 36331846 36332174 -105939270 + AluSg SINE Alu 1 330 0 2145 122 0 7 chr9 36332175 36332478 -105938966 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr9 36332478 36332499 -105938945 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 36333171 36333196 -105938248 + AT_rich Low_complexity Low_complexity 1 25 0 986 185 0 6 chr9 36334034 36334207 -105937237 + FAM SINE Alu 1 172 -3 734 249 131 19 chr9 36334233 36334611 -105936833 - L1ME1 LINE L1 -622 5544 5272 579 160 28 9 chr9 36334629 36334735 -105936709 - L1MB4 LINE L1 -25 6155 6048 856 242 82 40 chr9 36334757 36335247 -105936197 - L1M4 LINE L1 -817 5329 4861 2243 94 0 7 chr9 36335247 36335544 -105935900 + AluY SINE Alu 1 295 -16 856 242 82 40 chr9 36335544 36335646 -105935798 - L1M4 LINE L1 -1285 4861 4765 1957 146 9 35 chr9 36335646 36335962 -105935482 + AluSx SINE Alu 1 308 -4 856 242 82 40 chr9 36335962 36336270 -105935174 - L1M4 LINE L1 -1381 4765 4317 957 259 163 14 chr9 36336483 36336973 -105934471 - L1ME1 LINE L1 -1616 4530 3968 282 136 198 12 chr9 36338060 36338141 -105933303 - L1ME1 LINE L1 -2190 3956 3861 1998 181 43 89 chr9 36338166 36338725 -105932719 - L1MB7 LINE L1 -25 6159 5627 1258 223 39 29 chr9 36338753 36339062 -105932382 + AluJo SINE Alu 1 312 0 1910 130 25 7 chr9 36339069 36339345 -105932099 + AluSx SINE Alu 5 285 -27 1605 151 4 20 chr9 36339399 36339651 -105931793 - AluJb SINE Alu -1 311 64 236 326 39 6 chr9 36339656 36339837 -105931607 - L1ME1 LINE L1 -2798 3348 3162 1542 188 14 14 chr9 36339918 36340211 -105931233 - AluJb SINE Alu -19 293 1 2402 88 3 3 chr9 36340276 36340583 -105930861 - AluSx SINE Alu -5 307 1 544 247 45 39 chr9 36342303 36342481 -105928963 + MER20 DNA MER1_type 41 219 0 1493 183 23 109 chr9 36343238 36343405 -105928039 + L1MB8 LINE L1 5004 5184 -999 1363 189 60 0 chr9 36343405 36343686 -105927758 + AluJo SINE Alu 1 298 -14 1493 183 23 109 chr9 36343686 36343706 -105927738 + L1MB8 LINE L1 5184 5204 -979 1726 198 3 0 chr9 36343706 36344004 -105927440 + AluJb SINE Alu 1 299 -13 1493 183 23 109 chr9 36344004 36344150 -105927294 + L1MB8 LINE L1 5204 5361 -822 1725 133 78 0 chr9 36344150 36344420 -105927024 + AluSx SINE Alu 1 291 -21 1493 183 23 109 chr9 36344420 36344630 -105926814 + L1MB8 LINE L1 5361 5587 -596 2379 92 0 7 chr9 36344630 36344936 -105926508 + AluSg SINE Alu 1 304 -6 1493 183 23 109 chr9 36344936 36344997 -105926447 + L1MB8 LINE L1 5587 5552 -631 2332 74 13 26 chr9 36344997 36345306 -105926138 + AluY SINE Alu 1 305 -6 1493 183 23 109 chr9 36345306 36345396 -105926048 + L1MB8 LINE L1 5551 5647 -536 880 135 0 0 chr9 36345414 36345540 -105925904 + FLAM_C SINE Alu 1 126 -17 560 174 9 0 chr9 36345736 36345851 -105925593 + L1MB8 LINE L1 5760 5875 -309 1349 142 51 34 chr9 36345875 36346171 -105925273 + L1MB8 LINE L1 5853 6153 -25 1980 132 0 48 chr9 36346195 36346506 -105924938 + AluSx SINE Alu 1 296 -16 1585 158 21 0 chr9 36346835 36347076 -105924368 - AluJb SINE Alu -62 250 5 1502 179 60 8 chr9 36347139 36347407 -105924037 - AluJo SINE Alu -30 282 1 970 181 0 0 chr9 36347459 36347614 -105923830 + AluSq SINE Alu 1 155 -158 425 141 70 0 chr9 36347615 36347686 -105923758 + AluSg/x SINE Alu 194 269 -43 2268 99 14 0 chr9 36348148 36348440 -105923004 - AluSx SINE Alu -16 296 1 2165 90 41 10 chr9 36348748 36349038 -105922406 - AluSq SINE Alu -14 299 1 527 118 13 0 chr9 36349060 36349136 -105922308 - AluSp SINE Alu -109 204 128 548 176 0 0 chr9 36349143 36349245 -105922199 + AluJb SINE Alu 210 311 -1 1621 151 53 28 chr9 36349286 36349570 -105921874 + AluJo SINE Alu 1 291 -21 2029 130 25 0 chr9 36350073 36350358 -105921086 + AluSx SINE Alu 1 292 -20 1642 161 31 35 chr9 36350360 36350612 -105920832 + MER46B DNA MER2_type 43 170 -2561 2588 60 0 0 chr9 36350612 36350910 -105920534 + AluY SINE Alu 1 298 -13 1642 161 31 35 chr9 36350910 36350974 -105920470 + MER46B DNA MER2_type 170 233 -3 2237 121 0 3 chr9 36351013 36351319 -105920125 - AluSx SINE Alu -7 305 1 2363 78 3 14 chr9 36352293 36352588 -105918856 + AluSp SINE Alu 1 292 -21 2420 100 0 0 chr9 36352727 36353036 -105918408 - AluSc SINE Alu 0 309 1 525 227 97 0 chr9 36353120 36353293 -105918151 + L1MA10 LINE L1 5987 6334 0 231 237 13 40 chr9 36353507 36353583 -105917861 - MIR SINE MIR -85 123 50 1573 147 34 59 chr9 36353770 36354090 -105917354 - AluJb SINE Alu 0 312 1 2175 127 3 3 chr9 36354091 36354398 -105917046 - AluSx SINE Alu -5 307 1 2078 103 41 10 chr9 36354484 36354774 -105916670 + AluSq SINE Alu 1 299 -14 2268 99 14 0 chr9 36355082 36355374 -105916070 + AluSx SINE Alu 1 296 -16 2061 126 10 13 chr9 36356309 36356610 -105914834 - AluJo SINE Alu -8 304 5 252 244 0 12 chr9 36357500 36357582 -105913862 + (TG)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr9 36358628 36358649 -105912795 + AT_rich Low_complexity Low_complexity 1 21 0 2272 97 3 0 chr9 36359885 36360175 -105911269 + AluSx SINE Alu 1 291 -21 1580 125 17 0 chr9 36360257 36360489 -105910955 - MER72 LTR ERV1 -27 695 460 2263 103 0 3 chr9 36361576 36361867 -105909577 + AluSc SINE Alu 1 290 -19 1799 171 27 0 chr9 36361995 36362294 -105909150 + AluJo SINE Alu 1 307 -5 1543 149 129 0 chr9 36362296 36362551 -105908893 + AluJo SINE Alu 1 288 -14 2243 109 0 3 chr9 36362559 36362852 -105908592 + AluSx SINE Alu 1 292 -20 285 184 149 135 chr9 36362852 36362967 -105908477 + MLT1C LTR MaLR 335 454 -51 2309 106 0 3 chr9 36362967 36363268 -105908176 + AluSx SINE Alu 1 300 -12 285 184 149 135 chr9 36363268 36363293 -105908151 + MLT1C LTR MaLR 454 477 -28 2068 115 38 0 chr9 36363522 36363810 -105907634 - AluSq SINE Alu -14 299 1 2004 156 0 13 chr9 36363811 36364118 -105907326 - AluSx SINE Alu -9 303 1 187 118 0 0 chr9 36364122 36364156 -105907288 + (TTTG)n Simple_repeat Simple_repeat 2 132 0 1726 125 3 83 chr9 36364156 36364319 -105907125 - AluSx SINE Alu -1 321 147 2154 109 3 10 chr9 36364319 36364498 -105906946 - AluSg SINE Alu 0 310 132 2356 83 3 0 chr9 36364498 36364800 -105906644 - AluSp SINE Alu -10 303 1 2154 109 3 10 chr9 36364800 36364932 -105906512 - AluSg SINE Alu -178 132 1 1979 111 7 7 chr9 36364933 36365230 -105906214 - AluSc SINE Alu -12 297 1 1726 125 3 83 chr9 36365230 36365377 -105906067 - AluSx SINE Alu -174 148 1 729 146 23 15 chr9 36365380 36365510 -105905934 - FLAM_C SINE Alu -2 131 1 1879 128 7 7 chr9 36365511 36365808 -105905636 - AluSc SINE Alu -12 297 1 249 175 0 0 chr9 36366204 36366244 -105905200 - AluSq SINE Alu -11 291 252 194 0 39 0 chr9 36366264 36366290 -105905154 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1852 92 0 37 chr9 36366291 36366562 -105904882 - AluSq SINE Alu -52 261 1 41 30 0 15 chr9 36366570 36366609 -105904835 + AT_rich Low_complexity Low_complexity 1 40 -25 1746 109 36 56 chr9 36366609 36366719 -105904725 - AluSx SINE Alu -14 298 187 2402 57 0 7 chr9 36366719 36367020 -105904424 + AluY SINE Alu 1 299 -12 1746 109 36 56 chr9 36367020 36367213 -105904231 - AluSx SINE Alu -125 187 1 41 30 0 15 chr9 36367213 36367239 -105904205 + AT_rich Low_complexity Low_complexity 40 65 0 568 131 12 0 chr9 36367360 36367444 -105904000 + AluSq SINE Alu 142 226 -87 915 141 5 115 chr9 36367445 36367533 -105903911 - AluSx SINE Alu -141 171 114 1572 105 9 0 chr9 36367533 36367761 -105903683 - AluSq SINE Alu -14 299 70 915 141 5 115 chr9 36367761 36367864 -105903580 - AluSx SINE Alu -198 114 1 2078 112 3 13 chr9 36367868 36368182 -105903262 - AluY SINE Alu 0 311 1 1390 151 6 70 chr9 36368187 36368352 -105903092 - AluJb SINE Alu -20 292 118 183 42 0 0 chr9 36368352 36368376 -105903068 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2269 49 0 14 chr9 36368376 36368663 -105902781 - AluY SINE Alu -28 283 1 1390 151 6 70 chr9 36368663 36368808 -105902636 - AluJb SINE Alu -192 120 1 2281 93 0 3 chr9 36368818 36369120 -105902324 - AluSc SINE Alu -8 301 1 517 227 97 0 chr9 36369204 36369377 -105902067 + L1MA10 LINE L1 5987 6334 0 252 213 27 124 chr9 36369534 36369667 -105901777 - MIR SINE MIR -72 136 49 1456 147 34 59 chr9 36369854 36370174 -105901270 - AluJb SINE Alu 0 312 1 1500 134 3 45 chr9 36370175 36370489 -105900955 - AluSg SINE Alu -5 305 5 642 167 0 0 chr9 36370609 36370705 -105900739 + FRAM SINE Alu 55 150 -26 423 0 0 0 chr9 36370709 36370756 -105900688 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 373 95 48 16 chr9 36370756 36370819 -105900625 - AluSg SINE Alu -193 107 43 791 125 0 17 chr9 36370838 36370958 -105900486 - FLAM_C SINE Alu -15 118 1 1129 328 61 43 chr9 36370970 36371166 -105900278 + HERVL LTR ERVL 2669 2860 -2904 2331 71 10 6 chr9 36371166 36371477 -105899967 - AluSx SINE Alu 0 312 1 1129 328 61 43 chr9 36371477 36371782 -105899662 + HERVL LTR ERVL 2860 3158 -2606 1645 198 50 33 chr9 36371782 36372141 -105899303 + MLT1A1 LTR MaLR 1 365 0 1129 328 61 43 chr9 36372141 36372267 -105899177 + HERVL LTR ERVL 3158 3280 -2484 2037 114 0 17 chr9 36372267 36372565 -105898879 + AluSx SINE Alu 1 293 -19 1129 328 61 43 chr9 36372565 36372657 -105898787 + HERVL LTR ERVL 3280 3369 -2395 2081 118 3 3 chr9 36372657 36372953 -105898491 + AluSx SINE Alu 1 296 -16 1129 328 61 43 chr9 36372953 36373168 -105898276 + HERVL LTR ERVL 3369 3667 -2097 596 331 43 37 chr9 36373218 36373476 -105897968 + HERVL LTR ERVL 3764 4028 -1736 1724 140 86 73 chr9 36373476 36373861 -105897583 - MLT1B LTR MaLR 0 390 1 596 331 43 37 chr9 36373861 36374064 -105897380 + HERVL LTR ERVL 4028 4228 -1536 1602 169 4 4 chr9 36374201 36374473 -105896971 - AluJo SINE Alu -30 282 11 237 273 129 0 chr9 36374533 36374665 -105896779 - L1P LINE L1 -758 5388 5240 714 316 38 14 chr9 36374809 36375179 -105896265 + L1MEc LINE L1 67 445 -5951 688 192 41 0 chr9 36375215 36375361 -105896083 - MER67A LTR ERV1 0 543 392 2239 92 0 3 chr9 36375398 36375703 -105895741 + AluSq SINE Alu 1 304 -9 2144 101 0 3 chr9 36375713 36376011 -105895433 + AluSg SINE Alu 2 298 -12 1864 128 47 0 chr9 36376013 36376310 -105895134 + AluSx SINE Alu 1 311 -1 2046 187 88 29 chr9 36376324 36376768 -105894676 - MER67B LTR ERV1 -140 521 52 775 115 0 33 chr9 36376782 36376904 -105894540 - AluSp/q SINE Alu 0 313 196 26 0 0 0 chr9 36377004 36377030 -105894414 + AT_rich Low_complexity Low_complexity 1 26 0 2068 109 0 3 chr9 36377033 36377327 -105894117 + AluY SINE Alu 1 293 -18 1326 163 17 57 chr9 36377327 36377627 -105893817 - AluJo SINE Alu -23 289 2 769 209 70 0 chr9 36377632 36377790 -105893654 - AluJo/FRAM SINE Alu -10 302 134 2420 53 0 3 chr9 36377790 36378089 -105893355 - AluY SINE Alu -13 298 1 518 274 99 48 chr9 36378120 36378347 -105893097 + LTR33A LTR ERVL 21 268 -255 1832 90 27 111 chr9 36378347 36378680 -105892764 - AluSx SINE Alu -7 305 1 518 274 99 48 chr9 36378680 36378744 -105892700 + LTR33A LTR ERVL 268 327 -196 355 225 13 49 chr9 36378785 36378886 -105892558 - L1MC4 LINE L1 -1339 6983 1995 329 263 63 11 chr9 36378874 36378969 -105892475 - L1MC4a LINE L1 -1846 5962 5863 * 396 260 0 0 chr9 36378973 36379061 -105892383 - L1MC4a LINE L1 -530 5591 5513 1401 171 6 76 chr9 36379062 36379224 -105892220 + AluJo SINE Alu 2 133 -179 1506 95 9 0 chr9 36379224 36379435 -105892009 - AluSg/x SINE Alu -11 301 89 1401 171 6 76 chr9 36379435 36379588 -105891856 + AluJo SINE Alu 133 295 -17 2117 69 69 14 chr9 36379588 36379876 -105891568 + AluSc SINE Alu 1 304 -5 307 309 20 53 chr9 36379877 36380029 -105891415 + L1MC4 LINE L1 7601 7747 -295 30 83 0 0 chr9 36380223 36380295 -105891149 + AT_rich Low_complexity Low_complexity 1 72 0 847 241 0 0 chr9 36380302 36380468 -105890976 + FAM SINE Alu 1 166 -9 515 272 112 24 chr9 36380843 36381012 -105890432 - MIR SINE MIR -59 203 20 2105 202 84 17 chr9 36381035 36381529 -105889915 - MER21B LTR ERV1 -1 862 366 1999 103 4 4 chr9 36381558 36381865 -105889579 - AluSc SINE Alu 0 307 1 1224 98 0 0 chr9 36381869 36382032 -105889412 - AluSq SINE Alu -17 296 134 1996 103 0 63 chr9 36382032 36382351 -105889093 - AluSx SINE Alu -13 299 1 659 272 123 5 chr9 36382354 36382549 -105888895 - MER21B LTR ERV1 -605 258 41 370 319 162 9 chr9 36382871 36383087 -105888357 - MIR SINE MIR 0 262 14 196 310 14 14 chr9 36383167 36383238 -105888206 + MIR3 SINE MIR 118 188 -20 2191 80 3 0 chr9 36383641 36383929 -105887515 + AluY SINE Alu 17 305 -6 189 74 0 0 chr9 36384065 36384092 -105887352 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1883 119 0 11 chr9 36384092 36384370 -105887074 - AluSx SINE Alu -37 275 1 185 125 75 0 chr9 36384931 36384971 -105886473 + GA-rich Low_complexity Low_complexity 3 45 0 295 255 31 35 chr9 36384975 36385063 -105886381 + L1MC/D LINE L1 5473 5554 -653 1834 137 0 23 chr9 36385063 36385363 -105886081 - AluSx SINE Alu -19 293 1 295 255 31 35 chr9 36385363 36385402 -105886042 + L1MC/D LINE L1 5554 5592 -615 1903 122 3 46 chr9 36385435 36385739 -105885705 + AluSx SINE Alu 1 291 -21 1543 151 11 18 chr9 36385842 36386120 -105885324 + AluJo SINE Alu 5 280 -32 2369 77 0 10 chr9 36386160 36386473 -105884971 - AluY SINE Alu -1 310 1 704 278 65 6 chr9 36386648 36387039 -105884405 - MLT1K LTR MaLR 0 588 3 2177 102 0 7 chr9 36387304 36387609 -105883835 - AluSg SINE Alu -7 303 1 2504 48 0 13 chr9 36387621 36387934 -105883510 - AluY SINE Alu -2 309 1 1813 142 7 7 chr9 36388188 36388477 -105882967 + AluJo SINE Alu 16 304 -8 330 149 0 30 chr9 36388520 36388587 -105882857 - AluSc SINE Alu -1 298 234 322 141 42 0 chr9 36389143 36389214 -105882230 + GA-rich Low_complexity Low_complexity 2 75 0 1684 112 154 0 chr9 36389346 36389605 -105881839 - AluSg SINE Alu -1 299 1 628 241 0 7 chr9 36390235 36390372 -105881072 + AluSq/x SINE Alu 2 137 -175 1866 114 17 7 chr9 36390383 36390681 -105880763 + AluSq SINE Alu 12 312 -1 2315 84 0 0 chr9 36390707 36391005 -105880439 + AluSq SINE Alu 1 298 -15 565 216 161 55 chr9 36391007 36391299 -105880145 - MLT1J LTR MaLR -74 437 115 423 245 0 9 chr9 36391334 36391440 -105880004 + AluSq/x SINE Alu 2 106 -206 442 315 63 9 chr9 36391440 36391744 -105879700 - HERVL LTR ERVL -1127 4361 4039 6040 41 11 18 chr9 36391854 36392690 -105878754 + SVA Other Other 635 1386 0 487 222 0 26 chr9 36392701 36392818 -105878626 + AluJb SINE Alu 116 229 -83 194 62 31 0 chr9 36392961 36392993 -105878451 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2007 109 3 3 chr9 36392995 36393278 -105878166 - AluSx SINE Alu -29 283 1 1793 157 3 7 chr9 36393352 36393651 -105877793 + AluJb SINE Alu 1 298 -14 198 0 0 0 chr9 36394057 36394079 -105877365 + (A)n Simple_repeat Simple_repeat 1 22 0 792 181 0 0 chr9 36394300 36394433 -105877011 + FLAM_C SINE Alu 7 139 -4 441 262 0 0 chr9 36394433 36394536 -105876908 + MLT1F1 LTR MaLR 23 125 -442 2520 161 89 30 chr9 36394536 36395095 -105876349 + L1MD3 LINE L1 7404 7995 0 325 346 19 37 chr9 36395106 36395268 -105876176 + L1MEd LINE L1 892 1050 -5069 1943 141 0 3 chr9 36395270 36395574 -105875870 + AluSx SINE Alu 1 303 -9 1055 157 6 0 chr9 36395574 36395746 -105875698 + AluSg/x SINE Alu 134 306 -6 369 281 79 9 chr9 36395805 36395919 -105875525 + L1M4 LINE L1 13 134 -6408 2197 118 0 0 chr9 36395921 36396226 -105875218 + AluSx SINE Alu 1 305 -7 1092 206 181 8 chr9 36396383 36396776 -105874668 + L1M4 LINE L1 4742 5202 -944 543 196 69 144 chr9 36396885 36397009 -105874435 + MIR SINE MIR 11 113 -149 659 100 0 0 chr9 36397009 36397099 -105874345 + HY4 scRNA scRNA 1 90 -3 543 196 69 144 chr9 36397099 36397229 -105874215 + MIR SINE MIR 113 251 -11 2181 99 3 0 chr9 36397303 36397605 -105873839 + AluY SINE Alu 1 303 -8 246 254 148 8 chr9 36397683 36397805 -105873639 + L1MC4a LINE L1 6195 6333 -1475 1494 148 39 8 chr9 36397814 36398070 -105873374 + MER21A LTR ERV1 1 264 -667 2905 153 113 12 chr9 36398075 36398580 -105872864 + MER21A LTR ERV1 376 931 0 1931 123 3 16 chr9 36398583 36398891 -105872553 - AluSx SINE Alu -8 304 1 807 153 0 28 chr9 36399176 36399320 -105872124 + FLAM_C SINE Alu 1 140 -3 2318 89 0 3 chr9 36399378 36399681 -105871763 - AluSg SINE Alu -8 302 1 765 173 0 0 chr9 36399772 36399899 -105871545 + FLAM_C SINE Alu 1 127 -6 48 0 0 0 chr9 36399899 36399947 -105871497 + AT_rich Low_complexity Low_complexity 1 48 0 621 192 39 39 chr9 36400519 36400649 -105870795 + FLAM_C SINE Alu 2 131 -12 230 245 255 11 chr9 36400650 36400744 -105870700 + MER5A DNA MER1_type 73 189 0 365 175 0 0 chr9 36400752 36400809 -105870635 + MER3 DNA MER1_type 1 57 -152 1942 132 0 43 chr9 36400967 36401293 -105870151 + AluJb SINE Alu 1 312 0 1987 132 0 0 chr9 36401326 36401621 -105869823 + AluSx SINE Alu 2 296 -16 1161 27 41 0 chr9 36401726 36401872 -105869572 - L1PA13 LINE L1 -4 6159 6008 1994 119 3 0 chr9 36401979 36402286 -105869158 + AluSp SINE Alu 1 308 0 2100 127 0 0 chr9 36402426 36402725 -105868719 + AluSx SINE Alu 1 299 -13 2233 99 0 0 chr9 36402935 36403239 -105868205 - AluSq SINE Alu -9 304 1 768 181 0 15 chr9 36403349 36403482 -105867962 + FLAM_C SINE Alu 3 133 0 870 206 78 37 chr9 36404670 36404706 -105866738 + L1ME LINE L1 5083 5116 -1046 2411 80 0 0 chr9 36404706 36405019 -105866425 + AluSq SINE Alu 1 313 0 870 206 78 37 chr9 36405019 36405429 -105866015 + L1ME LINE L1 5116 5541 -621 289 284 105 42 chr9 36405860 36406041 -105865403 + MIR SINE MIR 3 190 -67 2017 130 0 0 chr9 36406043 36406350 -105865094 - AluSx SINE Alu -5 307 1 1647 168 3 7 chr9 36406357 36406648 -105864796 - AluJo SINE Alu -22 290 1 2236 98 3 0 chr9 36406680 36406987 -105864457 + AluSq SINE Alu 1 308 -5 2092 84 0 4 chr9 36406992 36407266 -105864178 + AluSc SINE Alu 1 273 -36 967 84 0 21 chr9 36407408 36407550 -105863894 - AluY SINE Alu -172 139 1 216 188 0 0 chr9 36407678 36407726 -105863718 + T-rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr9 36408999 36409034 -105862410 + AT_rich Low_complexity Low_complexity 1 35 0 2315 87 0 10 chr9 36409290 36409602 -105861842 + AluY SINE Alu 1 309 -2 715 161 19 52 chr9 36409735 36409890 -105861554 - L1MA10 LINE L1 -5 6329 6180 468 0 0 0 chr9 36409900 36409952 -105861492 + (TG)n Simple_repeat Simple_repeat 1 52 0 1036 166 5 26 chr9 36409955 36410018 -105861426 + AluJo SINE Alu 51 114 -198 2071 112 0 22 chr9 36410018 36410331 -105861113 - AluSx SINE Alu -6 306 1 1036 166 5 26 chr9 36410331 36410460 -105860984 + AluJo SINE Alu 114 239 -73 870 233 40 35 chr9 36410460 36410936 -105860508 - L1MCc LINE L1 -4891 1532 1296 317 141 77 0 chr9 36410934 36411012 -105860432 - L1MCc LINE L1 -6308 115 32 * 207 0 0 0 chr9 36411093 36411116 -105860328 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1576 147 4 12 chr9 36411673 36411932 -105859512 + AluJo SINE Alu 35 291 -21 2060 70 0 0 chr9 36411932 36412189 -105859255 + AluY SINE Alu 1 258 -53 723 84 0 0 chr9 36412191 36412286 -105859158 + AluY SINE Alu 203 297 -14 244 336 19 10 chr9 36412326 36412430 -105859014 - L3 LINE CR1 -11 1566 1462 2192 106 3 0 chr9 36412475 36412787 -105858657 - AluSp SINE Alu 0 313 1 2388 63 0 0 chr9 36413067 36413367 -105858077 + AluY SINE Alu 1 300 -11 1905 133 86 15 chr9 36413367 36413706 -105857738 - MSTA LTR MaLR -64 364 2 871 297 16 39 chr9 36413707 36413802 -105857642 - HERV16 LTR ERVL -4355 641 545 1736 168 27 0 chr9 36413802 36414094 -105857350 - AluJb SINE Alu -12 300 1 871 297 16 39 chr9 36414094 36414304 -105857140 - HERV16 LTR ERVL -4451 545 343 691 271 45 41 chr9 36414338 36414582 -105856862 - HERV16 LTR ERVL -4750 246 2 488 285 146 27 chr9 36414588 36414883 -105856561 - LTR16A1 LTR ERVL -5 452 123 2466 67 3 0 chr9 36414896 36415196 -105856248 - AluY SINE Alu -10 301 1 2439 78 0 7 chr9 36415196 36415505 -105855939 - AluSq SINE Alu -6 307 1 1036 76 0 8 chr9 36415508 36415640 -105855804 - AluSp SINE Alu -181 132 2 1902 164 7 7 chr9 36415779 36416089 -105855355 - AluJb SINE Alu 0 312 3 2295 77 31 0 chr9 36416212 36416498 -105854946 - AluSq SINE Alu -18 295 1 657 226 0 0 chr9 36416565 36416680 -105854764 - FLAM_A SINE Alu -18 115 1 1540 172 10 57 chr9 36416734 36416917 -105854527 - AluJb SINE Alu 0 305 141 2269 85 24 3 chr9 36416917 36417210 -105854234 - AluSq SINE Alu -14 299 1 1540 172 10 57 chr9 36417210 36417345 -105854099 - AluJb SINE Alu -164 141 1 2889 247 77 107 chr9 36417345 36417499 -105853945 - L1M3b LINE L1 -4751 1530 1373 351 0 0 0 chr9 36417499 36417538 -105853906 + (TG)n Simple_repeat Simple_repeat 2 40 0 2220 113 0 0 chr9 36417544 36417826 -105853618 - AluSg SINE Alu -28 282 1 2889 247 77 107 chr9 36417826 36417913 -105853531 - L1M3b LINE L1 -4913 1368 1280 760 147 39 8 chr9 36417913 36418042 -105853402 - FLAM_C SINE Alu 0 133 1 2889 247 77 107 chr9 36418042 36418151 -105853293 - L1M3b LINE L1 -5001 1280 1169 2169 137 0 0 chr9 36418151 36418450 -105852994 - AluSx SINE Alu -13 299 1 2889 247 77 107 chr9 36418450 36419658 -105851786 - L1M3b LINE L1 -5112 1169 11 2366 92 0 3 chr9 36419667 36419973 -105851471 - AluSg SINE Alu -5 305 1 29 0 0 0 chr9 36419973 36420002 -105851442 + AT_rich Low_complexity Low_complexity 1 29 0 1873 202 38 58 chr9 36420011 36420222 -105851222 - L1MD3 LINE L1 -13 7982 7768 1881 148 0 37 chr9 36420222 36420546 -105850898 - AluJb SINE Alu 0 312 1 1873 202 38 58 chr9 36420546 36420814 -105850630 - L1MD3 LINE L1 -227 7768 7513 610 136 64 16 chr9 36420796 36420921 -105850523 - L1MD3 LINE L1 -947 7048 6918 * 2231 77 3 20 chr9 36421513 36421810 -105849634 - AluSp SINE Alu -16 297 6 583 118 59 0 chr9 36422476 36422561 -105848883 - 5S rRNA rRNA -31 90 1 1343 154 39 0 chr9 36422641 36422849 -105848595 + AluJb SINE Alu 87 302 -10 425 281 118 67 chr9 36423066 36423364 -105848080 - L1M4 LINE L1 -1141 5005 4667 2196 113 23 3 chr9 36423364 36423664 -105847780 - AluSq SINE Alu -7 306 1 425 281 118 67 chr9 36423664 36423888 -105847556 - L1M4 LINE L1 -1479 4667 4456 543 160 0 20 chr9 36423966 36424066 -105847378 - FLAM_A SINE Alu 0 142 45 270 269 70 59 chr9 36424390 36424576 -105846868 - L1M4 LINE L1 -2244 3902 3715 1137 117 0 19 chr9 36424679 36424814 -105846630 + AluSq SINE Alu 1 134 -179 2565 53 0 3 chr9 36424814 36425113 -105846331 + AluY SINE Alu 1 298 -13 1137 117 0 19 chr9 36425113 36425139 -105846305 + AluSq SINE Alu 134 159 -154 520 116 0 107 chr9 36425241 36425353 -105846091 + AluSq SINE Alu 138 237 -76 2193 99 0 20 chr9 36425390 36425684 -105845760 - AluSx SINE Alu -24 288 1 2131 134 0 3 chr9 36426880 36427178 -105844266 + AluSx SINE Alu 1 297 -15 205 272 136 12 chr9 36427592 36427673 -105843771 - MIR3 SINE MIR -2 206 116 213 321 22 15 chr9 36428131 36428265 -105843179 + CT-rich Low_complexity Low_complexity 3 137 0 37 23 0 0 chr9 36428669 36428713 -105842731 + AT_rich Low_complexity Low_complexity 1 44 0 766 197 0 0 chr9 36428714 36428836 -105842608 + FLAM_C SINE Alu 2 123 -20 306 0 0 0 chr9 36428836 36428870 -105842574 + (CA)n Simple_repeat Simple_repeat 2 35 0 27 62 0 0 chr9 36428876 36428924 -105842520 + AT_rich Low_complexity Low_complexity 1 48 0 8994 176 36 9 chr9 36429077 36429665 -105841779 + L1P5 LINE L1 3414 3984 -2167 2319 95 0 16 chr9 36429665 36429971 -105841473 + AluSx SINE Alu 1 301 -11 8994 176 36 9 chr9 36429971 36431709 -105839735 + L1P5 LINE L1 3984 5791 -360 245 125 0 21 chr9 36431731 36431779 -105839665 + (TA)n Simple_repeat Simple_repeat 1 47 0 515 311 56 6 chr9 36432358 36432538 -105838906 + MER91A DNA MER1_type 8 196 0 281 267 130 27 chr9 36432563 36432709 -105838735 + L2 LINE L2 3108 3268 -4 2260 105 20 7 chr9 36432893 36433189 -105838255 - AluSx SINE Alu -12 300 1 2368 93 7 0 chr9 36433220 36433522 -105837922 - AluY SINE Alu -7 304 1 503 260 110 58 chr9 36433553 36433780 -105837664 + LTR33A LTR ERVL 21 268 -255 1959 90 27 111 chr9 36433780 36434113 -105837331 - AluSx SINE Alu -7 305 1 503 260 110 58 chr9 36434113 36434177 -105837267 + LTR33A LTR ERVL 268 327 -196 300 287 23 0 chr9 36434232 36434319 -105837125 - L1MC4 LINE L1 -1339 6703 6615 229 185 92 0 chr9 36434335 36434400 -105837044 - L1MC4 LINE L1 -1875 5933 5863 400 260 0 0 chr9 36434404 36434492 -105836952 - L1MC4 LINE L1 -530 5591 5513 824 154 15 0 chr9 36434493 36434623 -105836821 + FLAM_C SINE Alu 2 133 0 1846 110 8 4 chr9 36434655 36434910 -105836534 - AluSx SINE Alu -11 301 46 789 162 67 95 chr9 36435011 36435136 -105836308 - AluJb SINE Alu -100 212 85 1567 172 0 55 chr9 36435136 36435272 -105836172 + AluJo SINE Alu 1 143 -169 1918 162 0 13 chr9 36435272 36435575 -105835869 + AluJb SINE Alu 1 299 -13 1868 168 3 3 chr9 36435580 36435889 -105835555 + AluSx SINE Alu 1 309 -3 207 0 0 0 chr9 36435892 36435915 -105835529 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1567 172 0 55 chr9 36435915 36436059 -105835385 + AluJo SINE Alu 149 275 -37 789 162 67 95 chr9 36436059 36436143 -105835301 - AluJb SINE Alu -227 85 9 520 261 102 34 chr9 36436150 36436235 -105835209 - L1MC4 LINE L1 -622 5499 5421 2312 101 0 3 chr9 36436235 36436531 -105834913 + AluSg SINE Alu 1 295 -15 520 261 102 34 chr9 36436531 36436883 -105834561 - L1MC4 LINE L1 -700 5421 5026 2352 97 3 0 chr9 36437466 36437775 -105833669 - AluY SINE Alu -1 310 1 197 224 20 0 chr9 36437870 36437919 -105833525 + L2 LINE L2 3264 3313 0 2366 97 3 10 chr9 36438272 36438583 -105832861 - AluSp SINE Alu -4 309 1 2088 130 3 0 chr9 36438583 36438876 -105832568 - AluSx SINE Alu -16 296 3 2088 103 30 17 chr9 36438878 36439178 -105832266 - AluSx SINE Alu -8 304 1 1082 188 0 0 chr9 36439181 36439357 -105832087 - AluJ SINE Alu -8 304 129 973 189 17 6 chr9 36439399 36439574 -105831870 - AluJb SINE Alu -135 177 1 207 0 0 0 chr9 36439574 36439597 -105831847 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 1132 188 16 5 chr9 36439599 36439791 -105831653 - AluJb SINE Alu -32 280 87 407 120 40 53 chr9 36439794 36439869 -105831575 - AluJ SINE Alu -175 137 64 1629 129 40 63 chr9 36439933 36440236 -105831208 + AluJb SINE Alu 1 296 -16 221 234 0 0 chr9 36440311 36440358 -105831086 - L3b LINE CR1 0 1583 1537 969 148 12 0 chr9 36440358 36440520 -105830924 - AluJb SINE Alu -12 300 137 190 308 64 0 chr9 36440521 36440599 -105830845 - MIR3 SINE MIR -40 168 86 1422 152 152 8 chr9 36441746 36442010 -105829434 - AluSx SINE Alu 0 302 1 396 262 98 0 chr9 36442500 36442622 -105828822 + L2 LINE L2 3136 3269 -3 977 176 0 18 chr9 36442737 36442907 -105828537 - AluJo SINE Alu -24 288 122 880 201 148 27 chr9 36442953 36443326 -105828118 + L1MC5 LINE L1 7408 7825 -136 1080 170 55 85 chr9 36443340 36443376 -105828068 + MER21A LTR ERV1 1 37 -894 486 0 0 0 chr9 36443376 36443430 -105828014 + (CA)n Simple_repeat Simple_repeat 2 55 0 1080 170 55 85 chr9 36443430 36443623 -105827821 + MER21A LTR ERV1 37 223 -708 1683 120 132 0 chr9 36443623 36443881 -105827563 + AluSx SINE Alu 1 292 -20 1080 170 55 85 chr9 36443881 36443921 -105827523 + MER21A LTR ERV1 223 263 -668 2670 181 52 24 chr9 36443927 36444468 -105826976 + MER21A LTR ERV1 376 931 0 237 65 0 0 chr9 36444484 36444515 -105826929 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1868 108 0 0 chr9 36444518 36444759 -105826685 - AluSx SINE Alu -37 275 35 405 109 0 16 chr9 36444773 36444837 -105826607 - Alu SINE Alu -254 64 2 661 102 22 22 chr9 36444955 36445092 -105826352 + (TCCCC)n Simple_repeat Simple_repeat 4 140 0 1394 152 25 118 chr9 36445094 36445272 -105826172 - AluJo SINE Alu -24 288 150 1822 135 43 3 chr9 36445272 36445554 -105825890 - AluJb SINE Alu -19 293 1 1394 152 25 118 chr9 36445554 36445690 -105825754 - AluJo SINE Alu -162 150 3 2527 47 7 3 chr9 36446177 36446474 -105824970 + AluY SINE Alu 1 298 -13 985 159 46 0 chr9 36446912 36447063 -105824381 + FRAM SINE Alu 1 158 -18 1720 158 13 23 chr9 36447439 36447742 -105823702 + AluJb SINE Alu 1 300 -12 2141 86 79 0 chr9 36448078 36448358 -105823086 + AluSp SINE Alu 1 302 -11 207 0 0 0 chr9 36448377 36448400 -105823044 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 235 271 0 0 chr9 36448589 36448648 -105822796 - L1MC4 LINE L1 -1336 6706 6648 26 30 0 0 chr9 36449045 36449078 -105822366 + AT_rich Low_complexity Low_complexity 1 33 0 1239 188 73 8 chr9 36449081 36449342 -105822102 - L1MB5 LINE L1 -8 6166 5889 824 148 99 25 chr9 36449342 36449504 -105821940 - AluJo/FRAM SINE Alu -5 307 134 1553 145 25 0 chr9 36449504 36449746 -105821698 - AluJb SINE Alu -2 310 63 963 125 10 95 chr9 36449748 36449948 -105821496 - L1MA6 LINE L1 -171 6129 5947 2034 125 18 0 chr9 36450116 36450397 -105821047 - AluSx SINE Alu -26 286 1 340 66 49 0 chr9 36450429 36450490 -105820954 - L1PA16 LINE L1 0 6166 6103 812 177 14 0 chr9 36450504 36450645 -105820799 - L1MA6 LINE L1 -338 5962 5820 856 102 0 16 chr9 36450645 36450773 -105820671 - AluSg/x SINE Alu 0 310 185 1684 92 0 9 chr9 36450832 36451059 -105820385 + AluSc SINE Alu 1 225 -84 1841 146 77 5 chr9 36451167 36451560 -105819884 - L1MB5 LINE L1 -731 5602 5188 2227 123 3 3 chr9 36451563 36451873 -105819571 - AluSx SINE Alu -2 310 1 2356 106 0 0 chr9 36452245 36452548 -105818896 - AluSg SINE Alu -7 303 1 2086 121 0 4 chr9 36452548 36452829 -105818615 - AluSc SINE Alu -29 280 1 1165 52 7 0 chr9 36452830 36452966 -105818478 - AluSq/x SINE Alu -176 137 1 2222 95 0 7 chr9 36453072 36453356 -105818088 - AluSg SINE Alu -28 282 1 595 173 0 2 chr9 36453890 36454100 -105817344 + AluJ SINE Alu 3 263 -49 441 0 0 0 chr9 36454120 36454169 -105817275 + (TG)n Simple_repeat Simple_repeat 2 50 0 1945 98 66 7 chr9 36454215 36454501 -105816943 - AluSq SINE Alu -10 303 1 2272 77 44 0 chr9 36454625 36454923 -105816521 - AluY SINE Alu 0 311 1 1599 143 0 0 chr9 36455056 36455287 -105816157 - AluSx SINE Alu -81 231 1 1719 98 0 0 chr9 36456206 36456430 -105815014 - AluSg/x SINE Alu -4 308 85 870 295 137 8 chr9 36456511 36456996 -105814448 - L2 LINE L2 -2 3311 2761 3562 137 86 16 chr9 36457435 36457491 -105813953 + Tigger3b DNA MER2_type 21 72 -2956 823 157 0 15 chr9 36457491 36457625 -105813819 + FLAM_C SINE Alu 1 132 -1 3562 137 86 16 chr9 36457625 36458254 -105813190 + Tigger3b DNA MER2_type 72 754 -477 255 189 0 0 chr9 36458290 36458343 -105813101 + (TG)n Simple_repeat Simple_repeat 2 54 0 1282 112 6 0 chr9 36458637 36458806 -105812638 - AluSq SINE Alu -143 170 1 2258 72 13 16 chr9 36458808 36459112 -105812332 - AluY SINE Alu -8 303 1 2555 55 0 0 chr9 36459120 36459429 -105812015 - AluY SINE Alu -2 309 1 700 116 80 0 chr9 36459665 36459777 -105811667 - AluJo SINE Alu -177 135 15 2107 114 0 0 chr9 36459858 36460180 -105811264 - AluSx SINE Alu 0 324 3 940 95 0 14 chr9 36460289 36460437 -105811007 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 1644 79 0 0 chr9 36460437 36460640 -105810804 - AluY SINE Alu -41 270 68 1156 67 0 0 chr9 36460640 36460775 -105810669 - AluY SINE Alu -176 135 1 2869 112 26 33 chr9 36460775 36460954 -105810490 + Tigger3b DNA MER2_type 764 943 -2085 2073 102 3 88 chr9 36460954 36461296 -105810148 - AluSp SINE Alu 0 313 1 2869 112 26 33 chr9 36461296 36461572 -105809872 + Tigger3b DNA MER2_type 943 1216 -15 261 298 81 56 chr9 36461816 36461977 -105809467 + L2 LINE L2 2588 2752 -562 211 350 87 0 chr9 36462319 36462422 -105809022 - L2 LINE L2 -11 3261 3150 4093 140 21 55 chr9 36462642 36462705 -105808739 - L1MB7 LINE L1 -5 6179 6115 1955 141 3 7 chr9 36462705 36463004 -105808440 - AluJb SINE Alu -14 298 1 4093 140 21 55 chr9 36463004 36463760 -105807684 - L1MB7 LINE L1 -69 6115 5388 1928 103 4 4 chr9 36464192 36464445 -105806999 - AluSx SINE Alu -23 289 37 399 341 50 0 chr9 36464796 36464975 -105806469 + MIR SINE MIR 75 262 0 663 230 157 39 chr9 36465806 36466036 -105805408 + MIR SINE MIR 6 262 0 1488 165 112 0 chr9 36467323 36467583 -105803861 - AluJb SINE Alu -12 290 2 1883 134 20 3 chr9 36467662 36467961 -105803483 - AluSx SINE Alu -8 304 1 1908 145 0 13 chr9 36468615 36468926 -105802518 - AluSx SINE Alu -5 307 1 2742 79 37 80 chr9 36468926 36468983 -105802461 - L1MA1 LINE L1 -180 6122 6064 2162 90 7 0 chr9 36468983 36469283 -105802161 - AluSg SINE Alu -8 302 1 2742 79 37 80 chr9 36469283 36469601 -105801843 - L1MA1 LINE L1 -238 6064 5765 2062 117 3 0 chr9 36469601 36469899 -105801545 - AluSq SINE Alu -14 299 1 2742 79 37 80 chr9 36469899 36470023 -105801421 - L1MA1 LINE L1 -537 5765 5637 24 0 0 0 chr9 36470060 36470084 -105801360 + AT_rich Low_complexity Low_complexity 1 24 0 1039 130 79 6 chr9 36470158 36470335 -105801109 - AluJo SINE Alu -122 190 1 270 300 154 33 chr9 36470349 36470622 -105800822 - HAL1 LINE L1 -1543 964 659 483 302 187 34 chr9 36470662 36471020 -105800424 - HAL1 LINE L1 -1953 554 142 712 139 0 0 chr9 36471027 36471128 -105800316 + FLAM_C SINE Alu 17 117 -26 1595 149 90 10 chr9 36471214 36471502 -105799942 - AluJb SINE Alu -1 311 1 184 330 55 18 chr9 36471608 36471717 -105799727 - L2 LINE L2 -4 3268 3156 1825 151 7 0 chr9 36472552 36472856 -105798588 - AluSx SINE Alu -3 309 4 377 293 92 43 chr9 36472901 36473153 -105798291 - L1ME LINE L1 -335 5786 5519 2188 93 7 0 chr9 36473179 36473470 -105797974 - AluSg SINE Alu -17 293 1 1768 184 0 3 chr9 36483323 36483627 -105787817 + AluJo SINE Alu 1 303 -9 762 153 183 0 chr9 36483977 36484114 -105787330 - MER20 DNA MER1_type 0 219 58 270 264 157 16 chr9 36484187 36484308 -105787136 + MIR3 SINE MIR 18 155 -53 284 318 0 11 chr9 36484619 36484707 -105786737 + (CA)n Simple_repeat Simple_repeat 2 88 0 690 274 103 27 chr9 36484960 36485210 -105786234 + L1MC4 LINE L1 5345 5574 -547 805 150 0 30 chr9 36485210 36485343 -105786101 + FLAM_A SINE Alu 1 129 -4 690 274 103 27 chr9 36485343 36485537 -105785907 + L1MC4 LINE L1 5574 5823 -298 242 283 53 26 chr9 36485646 36485759 -105785685 + HAL1b LINE L1 1204 1319 -29 1962 119 0 3 chr9 36485825 36486133 -105785311 + AluSx SINE Alu 1 307 0 340 208 19 28 chr9 36486849 36486955 -105784489 - L1MC4a LINE L1 -1897 5911 5807 1608 160 44 27 chr9 36487072 36487365 -105784079 - AluJb SINE Alu -14 298 1 995 138 120 71 chr9 36487495 36487661 -105783783 - MER46A DNA MER2_type -2495 236 55 1702 158 0 54 chr9 36487661 36487812 -105783632 + AluJb SINE Alu 1 128 -184 342 0 0 0 chr9 36487812 36487850 -105783594 + (TA)n Simple_repeat Simple_repeat 2 39 0 1702 158 0 54 chr9 36487850 36488014 -105783430 + AluJb SINE Alu 128 299 -13 995 138 120 71 chr9 36488014 36488072 -105783372 - MER46A DNA MER2_type -2676 55 1 311 197 33 0 chr9 36488798 36488859 -105782585 - MIR3 SINE MIR -9 199 137 718 110 0 47 chr9 36488864 36488991 -105782453 - FLAM_C SINE Alu 0 143 23 2114 110 0 26 chr9 36489276 36489585 -105781859 + AluSx SINE Alu 1 301 -11 296 234 97 106 chr9 36490026 36490295 -105781149 + L1MC4 LINE L1 5801 6071 -1971 1737 177 0 3 chr9 36490295 36490606 -105780838 - AluJo SINE Alu -2 310 1 296 234 97 106 chr9 36490606 36491037 -105780407 + L1MC4 LINE L1 6071 6505 -1537 1944 151 0 0 chr9 36491037 36491329 -105780115 - AluJb SINE Alu -20 292 1 296 234 97 106 chr9 36491329 36491535 -105779909 + L1MC4 LINE L1 6505 6711 -1331 2176 108 0 3 chr9 36491535 36491842 -105779602 + AluSg SINE Alu 3 308 -2 296 234 97 106 chr9 36491842 36492616 -105778828 + L1MC4 LINE L1 6711 7495 -547 1549 138 43 20 chr9 36492663 36492967 -105778477 - MER33 DNA MER1_type -22 302 1 432 236 0 50 chr9 36492971 36493132 -105778312 + L1MC5 LINE L1 7345 7497 -464 679 208 101 68 chr9 36493139 36493306 -105778138 + L1MC5 LINE L1 7547 7707 -254 1912 108 35 14 chr9 36493306 36493592 -105777852 - AluSq SINE Alu -21 292 1 679 208 101 68 chr9 36493592 36493637 -105777807 + L1MC5 LINE L1 7707 7749 -212 2249 101 0 0 chr9 36493637 36493944 -105777500 - AluSx SINE Alu -5 307 1 679 208 101 68 chr9 36493944 36494095 -105777349 + L1MC5 LINE L1 7749 7923 -38 2316 46 0 0 chr9 36494537 36494856 -105776588 - AluY SINE Alu 0 319 1 705 189 8 0 chr9 36494946 36495068 -105776376 + FLAM_A SINE Alu 1 123 -19 2230 82 10 0 chr9 36495079 36495370 -105776074 + AluSc SINE Alu 1 294 -15 2512 68 0 0 chr9 36495372 36495683 -105775761 + AluY SINE Alu 1 311 0 1091 163 22 0 chr9 36496210 36496394 -105775050 + AluJo SINE Alu 108 295 -17 252 86 0 0 chr9 36496612 36496647 -105774797 + (A)n Simple_repeat Simple_repeat 1 35 0 1601 197 0 3 chr9 36497920 36498210 -105773234 - AluJo SINE Alu -23 289 1 745 109 130 115 chr9 36498210 36498402 -105773042 + AluJb SINE Alu 118 312 0 811 92 0 84 chr9 36498465 36498596 -105772848 - FLAM_C SINE Alu -7 136 17 459 304 187 34 chr9 36498603 36498961 -105772483 + HAL1 LINE L1 142 554 -1953 1155 223 24 24 chr9 36499508 36499804 -105771640 + AluJb SINE Alu 3 298 -4 1680 140 15 11 chr9 36499978 36500243 -105771201 - AluSx SINE Alu -46 266 1 2376 78 0 0 chr9 36500614 36500923 -105770521 - AluSc SINE Alu 0 309 1 1920 131 7 0 chr9 36501324 36501621 -105769823 + AluSq SINE Alu 1 299 -14 2420 95 38 7 chr9 36501630 36501995 -105769449 + L1MA1 LINE L1 5731 6119 -183 1869 162 0 0 chr9 36501997 36502293 -105769151 + AluSx SINE Alu 1 296 -16 823 136 15 15 chr9 36502306 36502438 -105769006 + FLAM_C SINE Alu 1 132 -1 2067 110 0 3 chr9 36502444 36502734 -105768710 + AluSc SINE Alu 1 289 -20 295 308 60 34 chr9 36502839 36502956 -105768488 - MIR SINE MIR -137 125 6 2162 106 0 6 chr9 36503006 36503317 -105768127 + AluSg SINE Alu 1 309 -1 333 200 163 22 chr9 36503949 36504084 -105767360 - L1ME4a LINE L1 0 6121 5968 276 247 90 11 chr9 36504179 36504268 -105767176 - MIR SINE MIR -71 137 42 545 288 29 0 chr9 36504739 36504878 -105766566 + MIR SINE MIR 8 150 -112 949 97 8 0 chr9 36504878 36505012 -105766432 + AluSq/x SINE Alu 1 135 -178 2186 102 3 3 chr9 36505012 36505316 -105766128 + AluSq SINE Alu 1 304 -9 1536 167 59 14 chr9 36505720 36506008 -105765436 + AluJb SINE Alu 1 301 -11 213 303 159 41 chr9 36506068 36506213 -105765231 - MIR3 SINE MIR -32 230 69 2764 13 0 0 chr9 36506888 36507199 -105764245 + AluYa5 SINE Alu 1 311 0 2094 129 0 0 chr9 36507909 36508211 -105763233 - AluSx SINE Alu -10 302 1 443 339 110 8 chr9 36508259 36508495 -105762949 + MIR SINE MIR 3 262 0 275 70 0 47 chr9 36508772 36508815 -105762629 - MER5B DNA MER1_type -16 162 122 3331 131 68 11 chr9 36508817 36509391 -105762053 + L1MB7 LINE L1 5524 6130 -54 972 140 60 0 chr9 36509408 36509558 -105761886 - U2 snRNA snRNA -1 187 29 286 149 0 0 chr9 36509585 36509632 -105761812 - U2 snRNA snRNA -141 47 1 310 92 0 154 chr9 36509632 36509655 -105761789 + L1MB7 LINE L1 6113 6138 -46 2117 117 0 0 chr9 36509655 36509964 -105761480 + AluSq SINE Alu 1 309 -4 1889 138 0 19 chr9 36509970 36510281 -105761163 + AluJb SINE Alu 1 305 -7 310 92 0 154 chr9 36510281 36510315 -105761129 + L1MB7 LINE L1 6143 6167 -17 289 194 0 42 chr9 36510321 36510393 -105761051 + L1MB7 LINE L1 6097 6165 -19 288 228 0 18 chr9 36510403 36510460 -105760984 - MER5B DNA MER1_type -49 129 74 1823 252 70 74 chr9 36510476 36510891 -105760553 + L1ME3A LINE L1 5173 5588 -582 1829 137 0 23 chr9 36510891 36511190 -105760254 + AluJb SINE Alu 21 312 0 1823 252 70 74 chr9 36511190 36511780 -105759664 + L1ME3A LINE L1 5588 6168 -2 190 217 65 0 chr9 36511801 36511847 -105759597 - MER5B DNA MER1_type -129 49 1 21 0 0 0 chr9 36511908 36511929 -105759515 + AT_rich Low_complexity Low_complexity 1 21 0 1463 148 82 59 chr9 36512231 36512378 -105759066 + AluJo SINE Alu 1 143 -169 2389 77 0 3 chr9 36512378 36512689 -105758755 + AluY SINE Alu 1 310 -1 1463 148 82 59 chr9 36512689 36512846 -105758598 + AluJo SINE Alu 143 312 0 2176 96 0 0 chr9 36512937 36513248 -105758196 + AluSx SINE Alu 1 312 0 807 302 31 43 chr9 36513811 36514255 -105757189 + MLT1K LTR MaLR 142 580 -8 1092 161 6 17 chr9 36514638 36514812 -105756632 + FAM SINE Alu 4 175 0 1682 171 7 13 chr9 36515089 36515393 -105756051 + AluJo SINE Alu 1 302 -10 414 0 0 0 chr9 36515734 36515780 -105755664 + (CA)n Simple_repeat Simple_repeat 1 46 0 2258 123 7 0 chr9 36517477 36517785 -105753659 - AluSx SINE Alu -2 310 1 183 409 0 0 chr9 36517868 36517934 -105753510 - L2 LINE L2 -3 3269 3204 644 247 6 62 chr9 36518228 36518406 -105753038 + MIR3 SINE MIR 35 202 -6 2224 88 11 67 chr9 36518699 36519072 -105752372 + MER4A LTR ERV1 1 352 -312 430 103 0 29 chr9 36519112 36519180 -105752264 + MER4A LTR ERV1 356 421 -243 559 151 216 29 chr9 36519287 36519426 -105752018 + MER4C LTR ERV1 301 465 0 2330 62 101 146 chr9 36519984 36520083 -105751361 + L1ME2 LINE L1 5278 5380 -954 2125 122 7 0 chr9 36520083 36520378 -105751066 + AluSx SINE Alu 1 297 -15 2298 70 17 7 chr9 36520378 36520678 -105750766 + AluY SINE Alu 1 303 -8 2330 62 101 146 chr9 36520678 36520851 -105750593 + L1ME2 LINE L1 5379 5558 -776 1579 160 80 21 chr9 36520851 36521138 -105750306 - AluJo SINE Alu -8 304 1 2330 62 101 146 chr9 36521138 36521248 -105750196 + L1ME2 LINE L1 5558 5671 -663 1477 80 45 5 chr9 36521248 36521447 -105749997 + AluSp SINE Alu 90 296 -17 2330 62 101 146 chr9 36521447 36521762 -105749682 + L1ME2 LINE L1 5671 5999 -335 247 154 0 0 chr9 36521762 36521801 -105749643 + MER3 DNA MER1_type 11 49 -160 2330 62 101 146 chr9 36521801 36521926 -105749518 + L1ME2 LINE L1 5999 6334 0 371 97 0 16 chr9 36522001 36522063 -105749381 + (TAGG)n Simple_repeat Simple_repeat 1 61 0 321 26 0 0 chr9 36522077 36522115 -105749329 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 1593 143 7 80 chr9 36522117 36522280 -105749164 - AluJo SINE Alu -34 278 143 1869 167 3 7 chr9 36522280 36522589 -105748855 + AluJb SINE Alu 1 308 0 1593 143 7 80 chr9 36522589 36522723 -105748721 - AluJo SINE Alu -169 143 1 2579 50 0 0 chr9 36522823 36523121 -105748323 + AluY SINE Alu 1 298 -13 2473 42 0 36 chr9 36523130 36523436 -105748008 + AluY SINE Alu 1 295 -16 2378 85 0 0 chr9 36524371 36524664 -105746780 + AluY SINE Alu 6 298 -13 2329 71 10 7 chr9 36525148 36525444 -105746000 + AluSq SINE Alu 1 297 -16 257 169 0 15 chr9 36525964 36526029 -105745415 + (TA)n Simple_repeat Simple_repeat 1 64 0 2144 107 0 4 chr9 36526074 36526354 -105745090 - AluSx SINE Alu -20 292 14 351 132 15 29 chr9 36526386 36526454 -105744990 + Alu SINE Alu 236 302 0 22 35 0 0 chr9 36526646 36526675 -105744769 + AT_rich Low_complexity Low_complexity 1 29 0 366 23 0 0 chr9 36526690 36526733 -105744711 + (TG)n Simple_repeat Simple_repeat 2 44 0 2125 85 20 14 chr9 36527259 36527553 -105743891 - AluSq SINE Alu -17 296 1 258 32 0 0 chr9 36527736 36527767 -105743677 + (A)n Simple_repeat Simple_repeat 1 31 0 1816 126 0 8 chr9 36528139 36528402 -105743042 - AluSx SINE Alu -18 294 34 334 167 86 126 chr9 36528421 36528458 -105742986 - L1ME4a LINE L1 0 6121 6084 1835 147 0 11 chr9 36528458 36528737 -105742707 + AluJb SINE Alu 20 295 -17 334 167 86 126 chr9 36528737 36528873 -105742571 - L1ME4a LINE L1 -37 6084 5955 2343 68 10 26 chr9 36528873 36529184 -105742260 - AluY SINE Alu -5 306 1 1774 166 0 71 chr9 36529186 36529355 -105742089 - AluJb SINE Alu -9 303 124 2103 134 0 3 chr9 36529355 36529647 -105741797 - AluSx SINE Alu -16 296 6 1774 166 0 71 chr9 36529647 36529661 -105741783 - AluJb SINE Alu -188 124 111 2381 77 3 0 chr9 36529661 36529959 -105741485 - AluY SINE Alu -12 299 1 1774 166 0 71 chr9 36529959 36530100 -105741344 - AluJb SINE Alu -201 111 1 261 343 105 9 chr9 36530121 36530226 -105741218 - L2 LINE L2 -476 2838 2724 1926 161 3 0 chr9 36530453 36530751 -105740693 + AluJo SINE Alu 1 299 -13 1846 180 0 6 chr9 36532480 36532791 -105738653 - AluJo SINE Alu -3 309 1 21 0 0 0 chr9 36532798 36532819 -105738625 + AT_rich Low_complexity Low_complexity 1 21 0 2531 58 0 0 chr9 36533406 36533700 -105737744 + AluY SINE Alu 1 294 -17 1606 206 14 0 chr9 36534049 36534335 -105737109 - AluJo SINE Alu -22 290 1 667 120 15 2 chr9 36534601 36534861 -105736583 + AluSx SINE Alu 1 312 0 1882 143 18 7 chr9 36534948 36535234 -105736210 - AluJo SINE Alu -19 293 5 2168 128 0 0 chr9 36535258 36535554 -105735890 - AluSx SINE Alu -16 296 1 1829 159 0 3 chr9 36535768 36536082 -105735362 + AluJo SINE Alu 1 313 0 2581 65 0 0 chr9 36536230 36536536 -105734908 + AluY SINE Alu 1 306 -5 273 219 0 0 chr9 36537992 36538056 -105733388 + L1MC4 LINE L1 6640 6703 -1339 257 240 0 62 chr9 36538040 36538136 -105733308 - L1MC4 LINE L1 -1339 6703 6614 * 246 161 18 36 chr9 36538136 36538192 -105733252 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 24 53 0 0 chr9 36538635 36538673 -105732771 + AT_rich Low_complexity Low_complexity 1 38 0 2235 94 3 3 chr9 36539053 36539341 -105732103 - AluSx SINE Alu -18 294 7 802 201 43 42 chr9 36539379 36539784 -105731660 + MLT1H1 LTR MaLR 10 555 0 25 0 0 0 chr9 36539790 36539815 -105731629 + AT_rich Low_complexity Low_complexity 1 25 0 246 32 0 0 chr9 36539829 36539860 -105731584 + (TTA)n Simple_repeat Simple_repeat 1 31 0 518 224 0 0 chr9 36539873 36539958 -105731486 - FLAM_A SINE Alu -56 86 2 700 188 8 0 chr9 36539968 36540085 -105731359 - L1MC1 LINE L1 0 6333 6216 1957 146 0 25 chr9 36540088 36540404 -105731040 - AluJo SINE Alu -4 308 1 2204 104 6 19 chr9 36540498 36540814 -105730630 - AluSx SINE Alu 0 312 1 758 215 126 60 chr9 36540971 36541273 -105730171 + L1MC4a LINE L1 5583 5904 -1904 35 41 0 0 chr9 36541543 36541592 -105729852 + AT_rich Low_complexity Low_complexity 1 49 0 2082 127 0 20 chr9 36542095 36542394 -105729050 + AluSx SINE Alu 1 293 -19 1991 113 35 3 chr9 36542418 36542702 -105728742 + AluSc SINE Alu 1 293 -16 212 278 19 0 chr9 36542995 36543049 -105728395 - L2 LINE L2 -8 3264 3210 2166 82 7 43 chr9 36543140 36543283 -105728161 + AluSg SINE Alu 1 129 -181 2312 101 0 10 chr9 36543283 36543591 -105727853 + AluSq SINE Alu 1 305 -8 2166 82 7 43 chr9 36543591 36543752 -105727692 + AluSg SINE Alu 129 294 -16 2296 184 30 11 chr9 36543803 36544316 -105727128 + Tigger7 DNA MER2_type 1 2490 -1 290 102 0 0 chr9 36544514 36544563 -105726881 + FLAM SINE Alu 86 127 -6 231 167 0 0 chr9 36544672 36544714 -105726730 + (CAGCC)n Simple_repeat Simple_repeat 5 46 0 216 97 0 0 chr9 36546683 36546714 -105724730 + (A)n Simple_repeat Simple_repeat 1 31 0 2357 102 0 0 chr9 36546726 36547039 -105724405 + AluSq SINE Alu 1 313 0 276 279 29 31 chr9 36547620 36547771 -105723673 + MIR3 SINE MIR 4 150 -66 2165 133 3 0 chr9 36547949 36548257 -105723187 - AluJo SINE Alu -3 309 1 538 283 80 22 chr9 36548386 36548612 -105722832 + Charlie8 DNA MER1_type 44 282 -2135 298 181 0 42 chr9 36548647 36548719 -105722725 - L1MB8 LINE L1 -142 6036 5968 880 138 41 0 chr9 36548728 36548851 -105722593 - FLAM_C SINE Alu -5 128 1 1805 161 3 16 chr9 36548923 36549227 -105722217 + AluJb SINE Alu 1 300 -12 265 250 60 50 chr9 36550183 36550283 -105721161 - MIR SINE MIR -76 186 86 559 340 43 39 chr9 36550604 36551087 -105720357 + L2 LINE L2 2337 2821 -493 25 0 0 0 chr9 36551313 36551338 -105720106 + AT_rich Low_complexity Low_complexity 1 25 0 250 319 12 102 chr9 36551339 36551409 -105720035 + L2 LINE L2 3118 3193 -79 1929 152 0 23 chr9 36551409 36551711 -105719733 + AluJo SINE Alu 3 297 -15 250 319 12 102 chr9 36551711 36551762 -105719682 + L2 LINE L2 3193 3223 -49 2012 137 13 3 chr9 36551762 36552069 -105719375 + AluSx SINE Alu 1 310 -2 250 319 12 102 chr9 36552069 36552112 -105719332 + L2 LINE L2 3223 3268 -4 932 280 113 46 chr9 36552333 36552426 -105719018 - L2 LINE L2 0 3313 3228 1671 161 17 27 chr9 36552426 36552718 -105718726 + AluJo SINE Alu 1 289 -23 932 280 113 46 chr9 36552718 36553320 -105718124 - L2 LINE L2 -85 3228 2584 266 263 126 21 chr9 36553639 36553734 -105717710 - MIR3 SINE MIR -10 198 94 242 237 53 40 chr9 36553871 36553947 -105717497 + MIR SINE MIR 186 262 0 221 306 97 0 chr9 36554041 36554103 -105717341 - MIR3 SINE MIR -32 176 109 558 198 0 0 chr9 36554110 36554216 -105717228 + FRAM SINE Alu 71 176 0 243 216 0 20 chr9 36554998 36555049 -105716395 - L2 LINE L2 -4 3268 3219 2300 49 3 11 chr9 36556473 36556782 -105714662 + AluY SINE Alu 1 307 0 354 285 63 51 chr9 36556868 36557026 -105714418 + MIR SINE MIR 91 250 -12 1778 65 0 55 chr9 36557031 36557340 -105714104 + AluY SINE Alu 1 292 -19 256 232 87 29 chr9 36557713 36557782 -105713662 - MIR SINE MIR -71 191 119 28 29 0 0 chr9 36558037 36558072 -105713372 + AT_rich Low_complexity Low_complexity 1 35 0 440 347 61 44 chr9 36558210 36558573 -105712871 + L2 LINE L2 2420 2788 -526 1627 177 6 61 chr9 36559713 36560041 -105711403 + AluJo SINE Alu 1 310 -2 372 306 68 50 chr9 36560155 36560377 -105711067 + MIR SINE MIR 20 245 -17 1703 273 34 62 chr9 36561160 36561834 -105709610 + MLT2F LTR ERVL 1 655 -8 256 158 123 0 chr9 36561878 36561935 -105709509 - L2 LINE L2 -215 3057 2994 676 88 68 101 chr9 36611962 36612110 -105659334 - AluSg SINE Alu -166 144 2 1389 164 44 4 chr9 36612113 36612387 -105659057 - L1MB2 LINE L1 -42 6129 5845 1114 154 0 21 chr9 36612399 36612587 -105658857 - AluSq SINE Alu -10 303 120 920 149 13 0 chr9 36612587 36612741 -105658703 - L1MB2 LINE L1 -359 5812 5657 1492 96 64 0 chr9 36612743 36612963 -105658481 - L1PA14 LINE L1 0 6161 5928 782 156 78 90 chr9 36612987 36613095 -105658349 + ORSL DNA AcHobo 23 131 -144 1910 154 3 0 chr9 36613095 36613393 -105658051 - AluSq SINE Alu -14 299 1 782 156 78 90 chr9 36613393 36613540 -105657904 + ORSL DNA AcHobo 131 275 0 2306 173 71 19 chr9 36613874 36614336 -105657108 + MER66B LTR ERV1 1 486 0 1670 99 0 0 chr9 36614364 36614587 -105656857 - AluSg/x SINE Alu -14 298 76 481 271 129 30 chr9 36614600 36615003 -105656441 - L1MC5 LINE L1 -165 7796 7354 801 186 0 21 chr9 36615013 36615147 -105656297 + AluJb SINE Alu 2 134 -178 2397 62 0 0 chr9 36615147 36615439 -105656005 + AluY SINE Alu 2 293 -18 2248 92 0 3 chr9 36615600 36615903 -105655541 - AluY SINE Alu -9 302 1 1666 130 72 0 chr9 36615907 36616184 -105655260 - AluJo SINE Alu -15 297 1 267 342 26 0 chr9 36616245 36616362 -105655082 - L1MC4 LINE L1 -593 7449 7330 440 281 114 19 chr9 36616713 36616923 -105654521 + MIR SINE MIR 13 242 -20 193 188 350 12 chr9 36618504 36618584 -105652860 - MIR SINE MIR -81 127 21 890 118 0 0 chr9 36620142 36620261 -105651183 + AluSq/x SINE Alu 1 119 -194 239 372 83 16 chr9 36620692 36620813 -105650631 - MIR3 SINE MIR -32 176 48 298 206 11 54 chr9 36621063 36621155 -105650289 + MER97c DNA MER1_type? 3 90 -1000 245 149 164 30 chr9 36621119 36621186 -105650258 - U2 snRNA snRNA -112 76 1 * 366 157 37 102 chr9 36621185 36621230 -105650214 + MER97a DNA MER1_type? 72 118 -776 2040 41 107 7 chr9 36621230 36621501 -105649943 + AluY SINE Alu 1 298 -13 366 157 37 102 chr9 36621501 36621563 -105649881 + MER97a DNA MER1_type? 118 172 -722 1760 125 114 0 chr9 36621762 36622042 -105649402 + AluSq SINE Alu 2 313 0 490 313 66 59 chr9 36622067 36622737 -105648707 - L2 LINE L2 -1 3271 2538 213 60 20 40 chr9 36622937 36622987 -105648457 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 1904 135 0 10 chr9 36623167 36623456 -105647988 + AluSx SINE Alu 1 286 -26 697 180 16 8 chr9 36623488 36623616 -105647828 + AluJo SINE Alu 13 141 -171 1997 125 14 0 chr9 36623717 36624005 -105647439 - AluSq SINE Alu -21 292 1 1924 128 0 0 chr9 36624010 36624276 -105647168 - AluSx SINE Alu -46 266 1 392 353 65 61 chr9 36624340 36624802 -105646642 - L1ME4a LINE L1 -64 6057 5594 6925 122 25 67 chr9 36624861 36626226 -105645218 + SVA Other Other 79 1386 0 183 100 0 0 chr9 36626429 36626459 -105644985 + (A)n Simple_repeat Simple_repeat 1 30 0 2442 64 0 6 chr9 36626555 36626868 -105644576 - AluY SINE Alu 0 311 1 258 246 87 0 chr9 36627139 36627208 -105644236 + MIR SINE MIR 186 260 -2 * 377 324 98 17 chr9 36627200 36627373 -105644071 - L2 LINE L2 0 3313 3127 2124 107 7 0 chr9 36627435 36627733 -105643711 + AluSx SINE Alu 1 300 -12 2262 76 0 7 chr9 36627741 36628029 -105643415 + AluSx SINE Alu 5 290 -22 254 191 246 9 chr9 36629368 36629478 -105641966 - L2 LINE L2 0 3313 3178 1539 111 5 9 chr9 36629539 36629756 -105641688 - AluJo SINE Alu -13 299 84 2298 67 3 0 chr9 36629782 36630101 -105641343 + AluSp SINE Alu 1 320 0 2010 128 0 0 chr9 36630396 36630717 -105640727 + AluSx SINE Alu 3 323 0 2234 98 0 3 chr9 36630796 36631093 -105640351 + AluSc SINE Alu 1 296 -13 1639 152 73 13 chr9 36631109 36631425 -105640019 - L1MB7 LINE L1 -17 6167 5833 2018 150 0 13 chr9 36631431 36631745 -105639699 - AluJb SINE Alu -2 310 1 2046 111 3 7 chr9 36631980 36632299 -105639145 - AluSx SINE Alu 0 318 1 220 27 54 0 chr9 36632301 36632338 -105639106 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 249 348 0 44 chr9 36632612 36632747 -105638697 - MIR3 SINE MIR -9 199 71 378 312 89 7 chr9 36632891 36633112 -105638332 + L2 LINE L2 2790 3027 -245 187 234 0 94 chr9 36633182 36633246 -105638198 + L2 LINE L2 3163 3220 -93 534 306 104 20 chr9 36633325 36633672 -105637772 + MLT1K LTR MaLR 211 586 -2 2198 108 0 0 chr9 36633773 36634070 -105637374 + AluSq SINE Alu 1 297 -16 1419 191 19 44 chr9 36634076 36634396 -105637048 + AluJo SINE Alu 1 312 0 2099 113 0 0 chr9 36634410 36634715 -105636729 - AluSx SINE Alu 0 305 1 1805 166 16 3 chr9 36634750 36635057 -105636387 + AluJo SINE Alu 1 311 -1 2109 109 0 14 chr9 36635061 36635355 -105636089 + AluSx SINE Alu 1 290 -22 209 364 73 33 chr9 36635615 36635766 -105635678 + MIR SINE MIR 16 141 -67 277 288 9 0 chr9 36636148 36636259 -105635185 + (TG)n Simple_repeat Simple_repeat 2 113 0 183 250 39 0 chr9 36637365 36637417 -105634027 + L3b LINE CR1 1352 1405 -178 519 269 47 27 chr9 36637869 36638018 -105633426 - MIR SINE MIR -4 258 107 452 279 93 5 chr9 36638021 36638225 -105633219 - LTR33 LTR ERVL -3 518 297 502 253 62 43 chr9 36638249 36638411 -105633033 - LTR33 LTR ERVL -331 190 26 206 254 60 0 chr9 36638528 36638595 -105632849 + MIR SINE MIR 35 105 -103 208 214 0 0 chr9 36639064 36639106 -105632338 + (CACCC)n Simple_repeat Simple_repeat 4 45 0 2166 115 0 0 chr9 36639386 36639703 -105631741 + AluSq SINE Alu 1 313 0 2196 114 0 0 chr9 36640074 36640372 -105631072 - AluSg SINE Alu -12 298 1 2472 53 0 3 chr9 36640372 36640670 -105630774 - AluY SINE Alu -13 298 1 350 271 181 19 chr9 36641200 36641355 -105630089 - MIR SINE MIR -11 251 72 190 289 50 6 chr9 36641708 36641780 -105629664 + MIR SINE MIR 74 140 -68 228 326 91 0 chr9 36642418 36642550 -105628894 - L2 LINE L2 -608 2706 2563 311 253 121 20 chr9 36642579 36642678 -105628766 - L3 LINE CR1 -125 1452 1344 29 0 0 0 chr9 36642965 36642994 -105628450 + AT_rich Low_complexity Low_complexity 1 29 0 282 164 0 0 chr9 36643506 36643561 -105627883 + (CA)n Simple_repeat Simple_repeat 1 55 0 2290 89 3 13 chr9 36646105 36646418 -105625026 + AluSx SINE Alu 1 310 -2 838 129 23 23 chr9 36646806 36646938 -105624506 + FLAM_C SINE Alu 2 133 0 2121 112 3 0 chr9 36650315 36650610 -105620834 - AluSx SINE Alu -15 297 2 1334 182 30 34 chr9 36650686 36650950 -105620494 - AluJo SINE Alu -16 296 34 2385 79 0 3 chr9 36651152 36651456 -105619988 + AluSq SINE Alu 1 303 -10 1296 185 0 0 chr9 36651726 36651942 -105619502 - AluJo SINE Alu -75 237 22 709 124 0 0 chr9 36651987 36652084 -105619360 + AluSg/x SINE Alu 146 242 -68 560 150 0 0 chr9 36652080 36652160 -105619284 - AluSp SINE Alu -100 213 134 * 1094 382 18 64 chr9 36652160 36652487 -105618957 - AluSx SINE Alu 0 312 1 186 43 0 0 chr9 36652503 36652526 -105618918 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr9 36652617 36652654 -105618790 + (CA)n Simple_repeat Simple_repeat 1 37 0 2316 82 0 19 chr9 36653277 36653592 -105617852 + AluY SINE Alu 1 309 -2 2088 114 0 13 chr9 36653606 36653742 -105617702 + AluSx SINE Alu 1 137 -175 2160 107 0 20 chr9 36653742 36654040 -105617404 + AluSp SINE Alu 1 292 -21 2088 114 0 13 chr9 36654040 36654210 -105617234 + AluSx SINE Alu 137 303 -9 445 248 74 0 chr9 36655596 36655717 -105615727 - MIR SINE MIR -83 179 50 205 350 10 90 chr9 36656303 36656503 -105614941 + MIR SINE MIR 39 222 -40 1445 88 0 0 chr9 36656505 36656686 -105614758 + AluSg SINE Alu 1 181 -129 2105 103 3 38 chr9 36657057 36657377 -105614067 + AluSc SINE Alu 1 309 0 2236 104 3 19 chr9 36657389 36657707 -105613737 + AluSp SINE Alu 1 313 0 2035 97 12 63 chr9 36658179 36658498 -105612946 - AluSq SINE Alu -10 303 1 372 250 14 71 chr9 36658563 36658703 -105612741 - L2 LINE L2 -559 2755 2624 2347 87 0 0 chr9 36659254 36659553 -105611891 - AluSg SINE Alu -11 299 1 1877 105 59 36 chr9 36659887 36660191 -105611253 + AluSq SINE Alu 1 311 -2 272 229 60 24 chr9 36660379 36660462 -105610982 + MIR SINE MIR 36 121 -87 821 81 8 32 chr9 36661015 36661138 -105610306 + FLAM_C SINE Alu 23 142 -1 2238 103 10 3 chr9 36661750 36662060 -105609384 + AluSq SINE Alu 1 312 -1 296 333 75 0 chr9 36662200 36662293 -105609151 - MIR SINE MIR -107 155 56 304 309 13 81 chr9 36662987 36663136 -105608308 + MIR SINE MIR 113 251 -11 195 261 23 57 chr9 36663275 36663363 -105608081 - L2 LINE L2 -38 3275 3191 667 150 67 25 chr9 36663431 36663551 -105607893 - FLAM_C SINE Alu -7 126 2 562 344 42 8 chr9 36667366 36667607 -105603837 - MIR SINE MIR -8 254 6 845 255 114 135 chr9 36672184 36672373 -105599071 + L2 LINE L2 2285 2476 -837 2309 62 24 0 chr9 36672373 36672661 -105598783 + AluY SINE Alu 1 295 -16 845 255 114 135 chr9 36672661 36672952 -105598492 + L2 LINE L2 2476 2772 -541 2047 114 45 10 chr9 36672952 36673242 -105598202 + AluSq SINE Alu 1 300 -13 845 255 114 135 chr9 36673242 36673811 -105597633 + L2 LINE L2 2772 3295 -18 2171 126 13 0 chr9 36674652 36674954 -105596490 + AluSx SINE Alu 1 306 -6 348 365 32 6 chr9 36676177 36676333 -105595111 + L2 LINE L2 2467 2626 -688 315 0 0 0 chr9 36676389 36676424 -105595020 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1860 142 0 0 chr9 36676431 36676706 -105594738 - AluSx SINE Alu -37 275 1 770 247 83 39 chr9 36676706 36677059 -105594385 - L1MC4 LINE L1 -4 8038 7572 185 0 40 0 chr9 36677079 36677104 -105594340 + (TA)n Simple_repeat Simple_repeat 2 27 0 1973 143 7 13 chr9 36677104 36677411 -105594033 - AluSx SINE Alu -7 305 1 695 231 52 9 chr9 36677414 36677626 -105593818 - L1ME3A LINE L1 -5 6165 5945 2425 58 0 10 chr9 36677636 36677957 -105593487 - AluY SINE Alu 0 311 1 349 339 8 0 chr9 36677995 36678125 -105593319 + L2 LINE L2 2654 2784 -530 186 71 0 0 chr9 36678175 36678203 -105593241 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2129 112 0 18 chr9 36678205 36678490 -105592954 - AluSx SINE Alu -32 280 1 1063 189 219 0 chr9 36678519 36678747 -105592697 - AluJb SINE Alu -34 278 1 302 369 67 17 chr9 36678756 36678935 -105592509 + L2 LINE L2 2841 3028 -244 1329 142 49 0 chr9 36678935 36679139 -105592305 - AluJb SINE Alu -98 214 1 2042 148 13 0 chr9 36679190 36679494 -105591950 - AluSx SINE Alu -2 310 3 198 71 0 0 chr9 36679517 36679545 -105591899 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 2094 124 6 13 chr9 36679554 36679868 -105591576 - AluSx SINE Alu 0 312 1 1105 185 219 0 chr9 36679991 36680229 -105591215 - AluJo SINE Alu -12 290 1 274 250 0 0 chr9 36680287 36680339 -105591105 + L2 LINE L2 3218 3269 -3 1472 116 41 141 chr9 36680686 36680789 -105590655 + AluJb SINE Alu 24 136 -176 1994 119 25 0 chr9 36680789 36681067 -105590377 + AluSg SINE Alu 1 285 -25 1472 116 41 141 chr9 36681067 36681086 -105590358 + AluJb SINE Alu 136 155 -157 2296 112 0 10 chr9 36681086 36681398 -105590046 + AluSx SINE Alu 1 309 -3 1472 116 41 141 chr9 36681398 36681411 -105590033 + AluJb SINE Alu 155 168 -144 2239 96 7 3 chr9 36681411 36681704 -105589740 + AluSg1 SINE Alu 1 294 -15 1472 116 41 141 chr9 36681704 36681886 -105589558 + AluJb SINE Alu 168 311 -1 580 241 36 24 chr9 36681953 36682119 -105589325 + L2 LINE L2 3131 3298 -15 234 0 0 0 chr9 36682119 36682145 -105589299 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 822 118 31 192 chr9 36682260 36682389 -105589055 + LTR23 LTR ERV1 1 149 -288 1627 174 0 52 chr9 36682389 36682587 -105588857 - AluJb SINE Alu -2 310 134 2190 93 7 35 chr9 36682587 36682897 -105588547 + AluSq SINE Alu 1 301 -12 1627 174 0 52 chr9 36682897 36683025 -105588419 - AluJb SINE Alu -178 134 1 822 118 31 192 chr9 36683025 36683043 -105588401 + LTR23 LTR ERV1 149 168 -269 1917 130 67 45 chr9 36683043 36683373 -105588071 + MER1B DNA MER1_type 1 337 0 2490 47 10 7 chr9 36683375 36683671 -105587773 - AluY SINE Alu -13 298 2 822 118 31 192 chr9 36683671 36683696 -105587748 + LTR23 LTR ERV1 169 127 -310 1353 188 21 76 chr9 36683696 36683828 -105587616 + AluJo SINE Alu 1 139 -173 2049 94 94 0 chr9 36683828 36684114 -105587330 + AluSp SINE Alu 1 313 0 1353 188 21 76 chr9 36684114 36684311 -105587133 + AluJo SINE Alu 139 312 0 822 118 31 192 chr9 36684311 36684388 -105587056 + LTR23 LTR ERV1 126 214 -223 1274 145 8 68 chr9 36684388 36684622 -105586822 + AluJb SINE Alu 1 220 -92 1012 118 0 0 chr9 36684750 36684885 -105586559 + AluY SINE Alu 115 249 -62 1484 115 28 5 chr9 36684885 36684917 -105586527 + AluSg/x SINE Alu 85 115 -197 243 0 0 0 chr9 36684917 36684944 -105586500 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1484 115 28 5 chr9 36684944 36685128 -105586316 + AluSg/x SINE Alu 115 306 -6 446 97 43 11 chr9 36685133 36685226 -105586218 + LTR23 LTR ERV1 210 305 -132 715 196 49 98 chr9 36685228 36685432 -105586012 + AluJo SINE Alu 2 195 -117 2223 94 0 17 chr9 36685481 36685803 -105585641 - AluSx SINE Alu 0 319 3 2086 116 0 33 chr9 36685809 36686112 -105585332 - AluSc SINE Alu -16 293 1 1292 113 15 49 chr9 36686253 36686423 -105585021 - AluY SINE Alu -14 297 134 2606 61 0 6 chr9 36686423 36686734 -105584710 - AluY SINE Alu -2 309 1 1292 113 15 49 chr9 36686734 36686767 -105584677 - AluY SINE Alu -177 134 101 4570 175 14 3 chr9 36686767 36687657 -105583787 + L1 LINE L1 4433 5331 -815 1354 167 5 14 chr9 36687657 36687879 -105583565 + AluJo SINE Alu 1 220 -92 303 28 0 0 chr9 36687948 36687984 -105583460 + (TA)n Simple_repeat Simple_repeat 1 36 0 977 150 70 37 chr9 36687997 36688184 -105583260 + AluJb SINE Alu 14 206 -106 2069 121 0 0 chr9 36688498 36688762 -105582682 + AluSx SINE Alu 1 264 -48 216 0 0 0 chr9 36688941 36688965 -105582479 + (CA)n Simple_repeat Simple_repeat 2 25 0 1806 173 0 26 chr9 36689996 36690302 -105581142 - AluJo SINE Alu -14 298 1 186 43 0 0 chr9 36690306 36690329 -105581115 + (TG)n Simple_repeat Simple_repeat 1 23 0 2150 119 10 0 chr9 36690397 36690690 -105580754 - AluSx SINE Alu -16 296 1 335 353 87 7 chr9 36690695 36690845 -105580599 - L1MC4a LINE L1 -1923 5885 5724 256 237 172 0 chr9 36691354 36691447 -105579997 - MIR SINE MIR -118 144 36 181 83 0 0 chr9 36691815 36691839 -105579605 - L2 LINE L2 -219 3053 3030 368 259 76 116 chr9 36692067 36692499 -105578945 - L1MC4a LINE L1 -872 5274 4860 1210 171 9 23 chr9 36692512 36692729 -105578715 + AluJb SINE Alu 87 300 -12 2090 92 29 57 chr9 36692731 36693045 -105578399 + AluY SINE Alu 1 305 -6 815 248 110 70 chr9 36693060 36693244 -105578200 - L1MC4a LINE L1 -1301 4845 4670 1749 178 3 44 chr9 36693244 36693564 -105577880 - AluJo SINE Alu -5 307 1 815 248 110 70 chr9 36693564 36693835 -105577609 - L1MC4a LINE L1 -1476 4670 4372 2318 103 0 0 chr9 36693852 36694143 -105577301 - AluY SINE Alu -20 291 1 35 0 0 0 chr9 36694146 36694181 -105577263 + AT_rich Low_complexity Low_complexity 1 35 0 638 214 41 147 chr9 36694353 36694373 -105577071 - L1MC4a LINE L1 -1757 4389 4368 1452 167 23 109 chr9 36694373 36694721 -105576723 - AluYb8 SINE Alu 0 318 1 638 214 41 147 chr9 36694721 36695039 -105576405 - L1MC4a LINE L1 -1778 4368 4104 2322 104 0 0 chr9 36695039 36695336 -105576108 + AluSx SINE Alu 1 297 -15 638 214 41 147 chr9 36695336 36695431 -105576013 - L1MC4a LINE L1 -2042 4104 4001 280 247 62 0 chr9 36695508 36695605 -105575839 + L1MC4 LINE L1 7940 8042 0 910 230 15 49 chr9 36695921 36696186 -105575258 + MIR SINE MIR 5 260 -2 198 275 0 0 chr9 36696328 36696397 -105575047 + (TA)n Simple_repeat Simple_repeat 1 69 0 237 216 115 101 chr9 36696421 36696569 -105574875 + Charlie8 DNA MER1_type 24 173 -2244 379 326 81 27 chr9 36696799 36697020 -105574424 + L1ME4a LINE L1 5659 5891 -230 718 76 98 8 chr9 36697037 36697169 -105574275 - L1MA8 LINE L1 -2 6289 6146 2265 82 0 0 chr9 36697213 36697483 -105573961 + AluSq SINE Alu 1 270 -43 227 135 0 0 chr9 36697483 36697520 -105573924 + AluSq SINE Alu 253 289 -14 3963 136 30 44 chr9 36697553 36697564 -105573880 + L1MA6 LINE L1 5510 5520 -780 1862 165 10 3 chr9 36697564 36697873 -105573571 + AluJb SINE Alu 1 311 -1 3963 136 30 44 chr9 36697873 36698415 -105573029 + L1MA6 LINE L1 5520 6051 -249 2543 84 0 0 chr9 36698415 36698726 -105572718 - AluSp SINE Alu -2 311 1 3963 136 30 44 chr9 36698726 36698973 -105572471 + L1MA6 LINE L1 6051 6300 0 228 35 0 0 chr9 36698986 36699015 -105572429 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2041 136 4 0 chr9 36699015 36699294 -105572150 - AluSx SINE Alu -32 280 1 182 345 36 0 chr9 36700071 36700126 -105571318 + L3b LINE CR1 1509 1565 -18 2143 126 0 0 chr9 36700702 36701011 -105570433 + AluSq SINE Alu 1 309 0 1957 160 3 13 chr9 36701035 36701347 -105570097 + AluJb SINE Alu 2 310 -2 226 315 79 11 chr9 36701434 36701523 -105569921 + L3 LINE CR1 1226 1320 -257 2268 87 0 10 chr9 36703662 36703960 -105567484 + AluSx SINE Alu 1 295 -17 2584 63 7 0 chr9 36704770 36705073 -105566371 - AluY SINE Alu -6 305 1 322 213 88 110 chr9 36705107 36705243 -105566201 - L1MC5 LINE L1 -31 7930 7798 329 281 29 29 chr9 36705249 36705388 -105566056 + Tigger8 DNA MER2_type 401 539 -127 21 0 0 0 chr9 36705489 36705510 -105565934 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 36706841 36706863 -105564581 + AT_rich Low_complexity Low_complexity 1 22 0 216 267 31 27 chr9 36707173 36707289 -105564155 + MIR SINE MIR 38 207 -55 242 300 64 91 chr9 36707847 36707912 -105563532 - L2 LINE L2 -557 2757 2692 1432 213 52 9 chr9 36707912 36708236 -105563208 - MER58B DNA MER1_type 0 341 4 242 300 64 91 chr9 36708236 36708390 -105563054 - L2 LINE L2 -622 2692 2544 198 0 0 0 chr9 36708902 36708924 -105562520 + (GGA)n Simple_repeat Simple_repeat 1 22 0 185 235 278 17 chr9 36709498 36709613 -105561831 + MIR3 SINE MIR 1 145 -63 201 273 0 0 chr9 36709932 36709976 -105561468 - MIR SINE MIR 0 262 219 784 159 45 70 chr9 36710014 36710171 -105561273 + FRAM SINE Alu 6 158 -18 2000 137 10 7 chr9 36710171 36710464 -105560980 + AluJo SINE Alu 1 294 -18 505 238 19 9 chr9 36710465 36710591 -105560853 - MIR SINE MIR -62 146 45 1787 255 146 39 chr9 36711024 36711261 -105560183 - L2 LINE L2 -340 2974 2764 2025 122 7 0 chr9 36711261 36711549 -105559895 - AluSx SINE Alu -22 290 1 1787 255 146 39 chr9 36711549 36712107 -105559337 - L2 LINE L2 -550 2764 2094 2555 61 0 0 chr9 36712368 36712665 -105558779 - AluY SINE Alu -14 297 1 1368 169 111 69 chr9 36713244 36713676 -105557768 - LTR7 LTR ERV1 0 450 1 320 209 13 3 chr9 36714463 36714541 -105556903 - MIR SINE MIR -43 165 88 2733 23 7 3 chr9 36714561 36714871 -105556573 - AluY SINE Alu 0 311 1 2381 108 0 0 chr9 36714985 36715292 -105556152 + AluSx SINE Alu 1 307 -5 384 238 0 0 chr9 36715553 36715633 -105555811 - MIR SINE MIR -160 102 23 315 322 68 0 chr9 36716052 36716170 -105555274 - MIR3 SINE MIR -23 185 60 228 315 0 0 chr9 36716254 36716308 -105555136 + (TG)n Simple_repeat Simple_repeat 1 54 0 299 130 19 0 chr9 36716371 36716425 -105555019 + CT-rich Low_complexity Low_complexity 4 58 0 832 228 301 8 chr9 36716524 36716906 -105554538 + L2 LINE L2 2819 3312 -1 2067 121 10 7 chr9 36717528 36717825 -105553619 + AluSx SINE Alu 1 298 -14 239 0 32 0 chr9 36717825 36717856 -105553588 + (TA)n Simple_repeat Simple_repeat 2 33 0 986 158 12 12 chr9 36718110 36718275 -105553169 - AluSg/x SINE Alu -12 298 134 2498 80 0 0 chr9 36718276 36718575 -105552869 - AluSc SINE Alu -10 299 1 311 298 7 21 chr9 36718590 36718731 -105552713 - L1ME3 LINE L1 -295 5867 5729 758 263 11 0 chr9 36718863 36719038 -105552406 - MIR SINE MIR -4 258 82 413 289 95 28 chr9 36719061 36719314 -105552130 + L2 LINE L2 2318 2587 -727 341 310 83 39 chr9 36719535 36719764 -105551680 + L2 LINE L2 3025 3263 -9 561 182 94 39 chr9 36720068 36720270 -105551174 + MER106B DNA MER1_type 30 1059 0 338 264 68 27 chr9 36722379 36722527 -105548917 - MIR SINE MIR -70 192 39 670 243 78 10 chr9 36724297 36724503 -105546941 - MIR SINE MIR 0 262 43 1732 161 0 56 chr9 36724574 36724746 -105546698 - AluJb SINE Alu -7 305 158 2263 108 0 3 chr9 36724746 36725043 -105546401 - AluSx SINE Alu -12 300 5 1732 161 0 56 chr9 36725043 36725193 -105546251 - AluJb SINE Alu -154 158 1 732 154 112 0 chr9 36725193 36725362 -105546082 + Charlie5 DNA MER1_type 2437 2624 0 2311 100 30 0 chr9 36725473 36725774 -105545670 + AluSx SINE Alu 1 310 -2 2254 94 13 3 chr9 36726542 36726841 -105544603 + AluSg SINE Alu 1 302 -8 384 202 115 49 chr9 36726972 36727155 -105544289 + MER102b DNA MER1_type 147 341 0 197 279 114 0 chr9 36727316 36727395 -105544049 - L3 LINE CR1 -550 1027 940 285 305 42 0 chr9 36727517 36727612 -105543832 - MIR SINE MIR -56 206 108 2035 120 50 0 chr9 36727744 36728027 -105543417 + AluSx SINE Alu 1 297 -15 675 251 62 19 chr9 36728027 36728238 -105543206 + MIR SINE MIR 29 248 -14 2015 146 0 0 chr9 36728658 36728952 -105542492 + AluSx SINE Alu 1 294 -18 234 280 120 0 chr9 36728968 36729043 -105542401 - MIR SINE MIR -154 108 25 235 359 19 0 chr9 36729062 36729168 -105542276 - MIR SINE MIR -70 138 31 415 280 261 11 chr9 36729404 36730128 -105541316 + L2 LINE L2 1842 2746 -568 2510 94 0 0 chr9 36730199 36730507 -105540937 - AluSq SINE Alu -3 310 3 186 133 0 0 chr9 36731280 36731310 -105540134 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 404 247 54 0 chr9 36731563 36731656 -105539788 + L2 LINE L2 3215 3312 -1 2385 88 3 3 chr9 36731867 36732172 -105539272 + AluSp SINE Alu 1 305 -8 1909 147 20 17 chr9 36732531 36732831 -105538613 + AluJb SINE Alu 1 301 -11 196 244 195 12 chr9 36732860 36732942 -105538502 + L2 LINE L2 3203 3299 -14 204 97 0 0 chr9 36733388 36733419 -105538025 + (CA)n Simple_repeat Simple_repeat 2 32 0 645 118 0 0 chr9 36733434 36733527 -105537917 - AluS SINE Alu -218 94 2 432 94 62 0 chr9 36733527 36733591 -105537853 + MSTB LTR MaLR 359 426 0 3081 209 63 20 chr9 36733593 36734422 -105537022 + L1MC4a LINE L1 6944 7807 -1 553 138 73 9 chr9 36734441 36734550 -105536894 + L1MA9 LINE L1 6162 6277 -35 31 68 0 0 chr9 36734565 36734624 -105536820 + AT_rich Low_complexity Low_complexity 1 59 0 270 283 85 9 chr9 36734768 36734874 -105536570 + MIR3 SINE MIR 95 208 0 2450 103 0 0 chr9 36735042 36735354 -105536090 - AluSx SINE Alu 0 312 1 2080 116 0 30 chr9 36736476 36736777 -105534667 - AluJo SINE Alu -20 292 1 2491 141 49 11 chr9 36736782 36737235 -105534209 - L1MB3 LINE L1 0 6183 5714 1255 154 50 141 chr9 36737896 36738293 -105533151 + MLT1A1 LTR MaLR 1 361 -4 262 262 12 60 chr9 36738646 36738730 -105532714 + L2 LINE L2 3193 3272 0 644 200 138 31 chr9 36738845 36739005 -105532439 + MER20 DNA MER1_type 40 216 -3 197 275 14 29 chr9 36739108 36739177 -105532267 - L2 LINE L2 0 3272 3205 1794 163 14 0 chr9 36739177 36739472 -105531972 - AluJo SINE Alu -13 299 1 2097 110 62 0 chr9 36739798 36740089 -105531355 + AluSp SINE Alu 1 309 -4 1160 130 25 0 chr9 36740882 36741044 -105530400 - AluSg/x SINE Alu -18 294 129 902 173 6 46 chr9 36741610 36741783 -105529661 + FRAM SINE Alu 1 166 0 238 242 45 15 chr9 36742644 36742710 -105528734 - L2 LINE L2 -6 3307 3240 256 324 97 14 chr9 36742978 36743123 -105528321 - MIR SINE MIR 0 262 106 238 302 0 0 chr9 36743230 36743293 -105528151 + MIR SINE MIR 68 130 -132 489 227 114 0 chr9 36743470 36743602 -105527842 + MIR SINE MIR 90 236 -26 21 0 0 0 chr9 36743772 36743793 -105527651 + AT_rich Low_complexity Low_complexity 1 21 0 1921 111 61 14 chr9 36744284 36744563 -105526881 + AluSg SINE Alu 2 293 -17 189 68 68 0 chr9 36745357 36745401 -105526043 + (TA)n Simple_repeat Simple_repeat 1 47 0 337 233 23 12 chr9 36745402 36745488 -105525956 - L1MC4 LINE L1 -1339 6703 6617 2175 117 3 3 chr9 36745884 36746182 -105525262 + AluSx SINE Alu 1 298 -14 323 183 0 14 chr9 36746183 36746254 -105525190 + MER53 DNA DNA 120 189 0 2593 68 0 0 chr9 36746295 36746602 -105524842 + AluY SINE Alu 1 307 -4 2272 121 0 3 chr9 36747133 36747446 -105523998 + AluSq SINE Alu 1 312 -1 2003 135 7 3 chr9 36747790 36748107 -105523337 + AluSx SINE Alu 1 318 0 1811 126 11 0 chr9 36748402 36748664 -105522780 + AluSx SINE Alu 23 287 -25 187 239 22 0 chr9 36748755 36748801 -105522643 - MIR3 SINE MIR -11 197 151 1929 142 0 10 chr9 36748944 36749239 -105522205 - AluSx SINE Alu -20 292 1 216 0 0 0 chr9 36749405 36749429 -105522015 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2073 154 0 0 chr9 36749459 36749764 -105521680 - AluSx SINE Alu -7 305 1 1165 127 0 0 chr9 36749804 36749961 -105521483 + FRAM SINE Alu 5 161 -15 2306 68 3 10 chr9 36750638 36750930 -105520514 - AluSc SINE Alu -19 290 1 429 197 0 0 chr9 36751257 36751333 -105520111 - L2 LINE L2 -10 3303 3228 21 0 0 0 chr9 36751421 36751442 -105520002 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 36752049 36752070 -105519374 + AT_rich Low_complexity Low_complexity 1 21 0 2339 101 0 3 chr9 36752389 36752754 -105518690 + AluSg SINE Alu 1 364 0 1603 192 3 31 chr9 36752774 36753092 -105518352 + AluJo SINE Alu 1 309 -3 1617 205 0 7 chr9 36753154 36753451 -105517993 + AluJb SINE Alu 1 295 -17 986 227 14 18 chr9 36753769 36753989 -105517455 - MER20 DNA MER1_type 0 219 1 2401 74 7 7 chr9 36754396 36754705 -105516739 + AluSc SINE Alu 1 309 0 2238 116 0 13 chr9 36755843 36756154 -105515290 + AluSg SINE Alu 1 307 -3 2107 130 3 0 chr9 36756420 36756712 -105514732 + AluSq SINE Alu 1 293 -20 876 121 0 16 chr9 36756783 36756907 -105514537 - FLAM_C SINE Alu -16 127 6 407 277 125 0 chr9 36757856 36758040 -105513404 - L1M4 LINE L1 -1890 4256 4050 44 46 0 0 chr9 36758079 36758144 -105513300 + AT_rich Low_complexity Low_complexity 1 65 0 1699 179 145 39 chr9 36758207 36758615 -105512829 - LTR32 LTR ERVL -7 464 14 302 213 64 85 chr9 36758708 36758742 -105512702 + L1ME LINE L1 5380 5413 -749 2043 141 3 0 chr9 36758742 36759039 -105512405 + AluSx SINE Alu 1 298 -14 302 213 64 85 chr9 36759039 36759145 -105512299 + L1ME LINE L1 5413 5517 -645 344 279 61 20 chr9 36759540 36759687 -105511757 - MIR SINE MIR -51 211 59 1606 177 45 10 chr9 36760680 36760968 -105510476 + AluJo SINE Alu 1 298 -14 6181 129 19 16 chr9 36761489 36762456 -105508988 - LTR5 LTR ERVK 0 969 1 24 32 0 0 chr9 36762844 36762875 -105508569 + AT_rich Low_complexity Low_complexity 1 31 0 303 296 15 12 chr9 36763207 36763362 -105508082 + L1M4 LINE L1 3767 3923 -2223 1566 160 31 35 chr9 36763427 36763714 -105507730 - AluJo SINE Alu -26 286 1 1998 153 3 6 chr9 36763787 36764100 -105507344 + AluSx SINE Alu 1 312 0 203 61 30 0 chr9 36764376 36764409 -105507035 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1878 125 84 0 chr9 36764531 36764818 -105506626 + AluSq SINE Alu 1 311 -2 2008 156 18 0 chr9 36764856 36765190 -105506254 - L1PB4 LINE L1 -2 6154 5815 266 189 27 0 chr9 36765194 36765268 -105506176 - L1PA16 LINE L1 -9 6156 6082 * 703 132 26 0 chr9 36765255 36765369 -105506075 - L1PB4 LINE L1 -327 5829 5713 404 158 44 70 chr9 36765377 36765491 -105505953 + L1PB4 LINE L1 5621 5731 -425 312 115 0 19 chr9 36765534 36765586 -105505858 + Alu SINE Alu 248 298 -2 1361 296 29 12 chr9 36765586 36766249 -105505195 + L1MC5 LINE L1 3294 3967 -2179 621 239 72 61 chr9 36766246 36766360 -105505084 + L1MEc LINE L1 1905 2016 -4380 * 2441 84 0 0 chr9 36766360 36766658 -105504786 + AluY SINE Alu 1 298 -13 258 32 0 0 chr9 36766658 36766689 -105504755 + (TA)n Simple_repeat Simple_repeat 2 32 0 621 239 72 61 chr9 36766689 36766726 -105504718 + L1MEc LINE L1 2016 2051 -4345 2199 97 10 13 chr9 36766726 36767024 -105504420 - AluSx SINE Alu -15 297 1 621 239 72 61 chr9 36767024 36767230 -105504214 + L1MEc LINE L1 2051 2268 -4128 1389 192 7 46 chr9 36767242 36767523 -105503921 + AluJo SINE Alu 13 282 -30 621 286 70 36 chr9 36767526 36767882 -105503562 + L1MEc LINE L1 2211 2578 -3637 629 200 19 76 chr9 36767900 36768110 -105503334 + L1MEc LINE L1 2757 2954 -3261 3151 189 66 14 chr9 36768166 36768866 -105502578 - L1MB4 LINE L1 -40 6140 5405 2277 281 43 14 chr9 36768878 36769866 -105501578 - L1M4 LINE L1 -2647 3499 2483 578 190 121 46 chr9 36769852 36770026 -105501418 - L1MA9 LINE L1 0 6312 6126 * 589 332 138 38 chr9 36771890 36772537 -105498907 + L1MC5 LINE L1 4715 7746 -215 396 341 203 27 chr9 36773312 36773972 -105497472 - L2 LINE L2 -399 2915 2140 1054 146 0 22 chr9 36774077 36774255 -105497189 - AluJb SINE Alu -1 311 138 270 336 23 0 chr9 36774273 36774404 -105497040 + (CCAA)n Simple_repeat Simple_repeat 3 136 0 316 303 183 52 chr9 36774404 36774430 -105497014 - L2 LINE L2 0 3272 3251 1905 140 0 20 chr9 36774430 36774730 -105496714 + AluSx SINE Alu 1 294 -18 316 303 183 52 chr9 36774730 36775248 -105496196 - L2 LINE L2 -21 3251 2243 534 263 146 69 chr9 36775288 36775617 -105495827 - L2 LINE L2 -74 3239 2857 1957 114 0 81 chr9 36775617 36775949 -105495495 + AluSx SINE Alu 1 305 -7 534 263 146 69 chr9 36775949 36776048 -105495396 - L2 LINE L2 -456 2857 2767 255 125 0 0 chr9 36776793 36776833 -105494611 + (CA)n Simple_repeat Simple_repeat 1 40 0 304 312 43 7 chr9 36777256 36777394 -105494050 - MIR3 SINE MIR -65 143 1 2093 102 14 7 chr9 36778844 36779137 -105492307 - AluSx SINE Alu -17 295 1 243 294 28 46 chr9 36779690 36779799 -105491645 - L2 LINE L2 -493 2821 2715 321 123 0 0 chr9 36780397 36780454 -105490990 - MER53 DNA DNA 0 189 133 459 0 0 0 chr9 36780535 36780586 -105490858 + (CA)n Simple_repeat Simple_repeat 2 52 0 2125 135 0 0 chr9 36780612 36780924 -105490520 + AluSx SINE Alu 1 312 0 1445 162 13 0 chr9 36780929 36781164 -105490280 - AluSq SINE Alu -7 306 69 859 199 131 5 chr9 36881325 36881531 -105389913 + MIR SINE MIR 12 243 -19 669 174 14 58 chr9 36881828 36881966 -105389478 + FLAM_A SINE Alu 1 132 -1 2370 77 40 0 chr9 36881967 36882265 -105389179 + AluY SINE Alu 1 310 -1 968 353 137 17 chr9 36882425 36883623 -105387821 - L2 LINE L2 -337 2977 1636 212 200 18 18 chr9 36883708 36883763 -105387681 + GA-rich Low_complexity Low_complexity 3 57 0 689 9 7 0 chr9 36884989 36885112 -105386332 + L1PA8 LINE L1 6053 6183 0 1232 191 4 13 chr9 36885499 36885729 -105385715 - AluJo SINE Alu 0 312 85 398 322 47 30 chr9 36887613 36887933 -105383511 + L1MC4a LINE L1 5730 6052 -118 2251 109 0 0 chr9 36887944 36888258 -105383186 + AluSx SINE Alu 1 314 0 2417 92 0 0 chr9 36890321 36890613 -105380831 - AluSg SINE Alu -13 297 6 231 238 16 71 chr9 36890884 36891010 -105380434 - L1MC5 LINE L1 -30 7931 7813 199 191 43 0 chr9 36891012 36891059 -105380385 - MIR SINE MIR -73 135 87 181 264 146 56 chr9 36892173 36892317 -105379127 + L2 LINE L2 2131 2287 -1027 2138 142 0 3 chr9 36894276 36894579 -105376865 + AluSx SINE Alu 1 302 -10 2011 144 3 3 chr9 36895216 36895515 -105375929 + AluSx SINE Alu 1 299 -13 917 276 4 8 chr9 36895585 36895824 -105375620 + MIR SINE MIR 1 238 -24 309 318 81 17 chr9 36895839 36896012 -105375432 + L2 LINE L2 2631 2814 -500 181 326 49 35 chr9 36896122 36896266 -105375178 - L2 LINE L2 -963 2351 2206 208 247 173 12 chr9 36896447 36896528 -105374916 - L2 LINE L2 -5 3267 3174 2445 84 3 13 chr9 36897044 36897355 -105374089 + AluSq SINE Alu 1 308 -5 2369 85 17 0 chr9 36898108 36898401 -105373043 + AluSc SINE Alu 1 298 -11 1719 144 115 0 chr9 36898825 36899095 -105372349 - AluJb SINE Alu -11 301 1 182 191 0 16 chr9 36899367 36899430 -105372014 + (CA)n Simple_repeat Simple_repeat 1 62 0 2562 232 101 23 chr9 36899462 36899936 -105371508 - HAL1 LINE L1 -1618 889 453 2342 87 0 35 chr9 36899936 36900246 -105371198 - AluSq SINE Alu -14 299 1 2562 232 101 23 chr9 36900246 36900594 -105370850 - HAL1 LINE L1 -2054 453 3 1267 126 11 0 chr9 36900723 36900898 -105370546 - AluJ SINE Alu -7 305 129 227 290 65 9 chr9 36901020 36901127 -105370317 + L2 LINE L2 3147 3259 -54 362 298 50 8 chr9 36901705 36901826 -105369618 - MIR3 SINE MIR -23 185 60 447 257 71 14 chr9 36903423 36903563 -105367881 - MIR3 SINE MIR -31 177 30 180 0 0 0 chr9 36904245 36904265 -105367179 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1723 159 39 4 chr9 36904267 36904525 -105366919 - AluJo SINE Alu -24 288 22 306 0 0 0 chr9 36904625 36904659 -105366785 + (TG)n Simple_repeat Simple_repeat 2 35 0 2090 256 89 2 chr9 36904721 36905326 -105366118 - MLT2F LTR ERVL 0 663 6 232 251 86 53 chr9 36905483 36905670 -105365774 - L1MEd LINE L1 -4444 1685 1493 1289 265 49 57 chr9 36905683 36906171 -105365273 - L1MEd LINE L1 -1045 1445 955 770 154 0 44 chr9 36906171 36906307 -105365137 - AluJ SINE Alu -172 130 1 1289 265 49 57 chr9 36906307 36906344 -105365100 - L1MEd LINE L1 -1535 955 919 2412 92 0 0 chr9 36906344 36906637 -105364807 - AluY SINE Alu -18 293 1 1289 265 49 57 chr9 36906637 36906837 -105364607 - L1MEd LINE L1 -1571 919 616 22 0 0 0 chr9 36907041 36907063 -105364381 + AT_rich Low_complexity Low_complexity 1 22 0 1938 166 10 13 chr9 36907136 36907449 -105363995 - AluJb SINE Alu 0 312 1 213 273 124 8 chr9 36907449 36907570 -105363874 + L2 LINE L2 1821 1955 -1359 576 175 19 0 chr9 36909294 36909397 -105362047 + MER81 DNA DNA 2 106 -8 255 213 16 47 chr9 36910239 36910366 -105361078 + (CAGAGA)n Simple_repeat Simple_repeat 3 125 0 362 269 15 23 chr9 36910459 36910589 -105360855 + (CAGAGA)n Simple_repeat Simple_repeat 2 130 0 2335 81 6 40 chr9 36910597 36910920 -105360524 + AluSx SINE Alu 1 312 0 383 277 191 11 chr9 36911063 36911258 -105360186 + MIR SINE MIR 35 262 0 244 323 71 24 chr9 36911244 36911498 -105359946 - L2 LINE L2 -1243 2071 1806 * 436 301 44 89 chr9 36911889 36912082 -105359362 + L2 LINE L2 1626 1826 -1488 1974 152 0 26 chr9 36912082 36912392 -105359052 - AluJo SINE Alu -10 302 1 436 301 44 89 chr9 36912392 36912723 -105358721 + L2 LINE L2 1826 2126 -1188 273 197 0 0 chr9 36913042 36913108 -105358336 + GA-rich Low_complexity Low_complexity 2 67 0 2130 118 7 3 chr9 36913498 36913817 -105357627 + AluSx SINE Alu 1 312 0 703 258 68 95 chr9 36914592 36914992 -105356452 + MLT1I LTR MaLR 21 409 0 544 291 74 0 chr9 36915185 36915374 -105356070 + LTR67 LTR ERVL 353 555 -2 1984 139 30 3 chr9 36915452 36915753 -105355691 + AluSg SINE Alu 1 309 -1 35483 52 3 7 chr9 36915755 36920384 -105351060 + L1P LINE L1 13 4626 -1520 2423 55 41 7 chr9 36923512 36923805 -105347639 + AluY SINE Alu 1 303 -8 308 174 105 23 chr9 36923837 36923923 -105347521 + L1MC5 LINE L1 7611 7703 -258 24 0 0 0 chr9 36924025 36924049 -105347395 + AT_rich Low_complexity Low_complexity 1 24 0 281 238 95 40 chr9 36924050 36924176 -105347268 + L1MC5 LINE L1 7729 7861 -100 562 310 13 77 chr9 36925834 36926134 -105345310 + L2 LINE L2 2992 3272 0 183 362 24 31 chr9 36926813 36926940 -105344504 + MIR SINE MIR 51 176 -86 2321 112 7 0 chr9 36926991 36927287 -105344157 + AluSx SINE Alu 1 298 -14 732 289 125 42 chr9 36927714 36928115 -105343329 - L3 LINE CR1 -243 1334 901 444 328 114 22 chr9 36928386 36928657 -105342787 + L3 LINE CR1 931 1226 -351 1965 164 3 7 chr9 36928967 36929272 -105342172 - AluJo SINE Alu -8 304 1 386 313 20 35 chr9 36929516 36929714 -105341730 - MER117 DNA MER1_type -2 195 1 1547 93 4 4 chr9 36929986 36930211 -105341233 + L1PB2 LINE L1 5927 6151 0 1488 153 0 13 chr9 36930258 36930486 -105340958 + AluJb SINE Alu 1 225 -87 634 194 90 0 chr9 36930939 36931073 -105340371 + MER103 DNA DNA 2 147 -19 2100 126 14 3 chr9 36931236 36931530 -105339914 + AluJb SINE Alu 1 297 -15 2268 97 3 0 chr9 36931632 36931922 -105339522 - AluSg1 SINE Alu -18 291 1 208 359 119 9 chr9 36933599 36933919 -105337525 + L2 LINE L2 2411 2765 -549 2345 103 0 3 chr9 36935362 36935663 -105335781 + AluSc SINE Alu 1 300 -9 23 0 0 0 chr9 36935993 36936016 -105335428 + AT_rich Low_complexity Low_complexity 1 23 0 414 256 26 43 chr9 36936273 36936390 -105335054 + L2 LINE L2 3154 3268 -4 1412 154 5 5 chr9 36936672 36936892 -105334552 - AluJb SINE Alu -11 301 82 2213 133 0 0 chr9 36937117 36937417 -105334027 + AluSx SINE Alu 1 300 -12 717 114 9 0 chr9 36939023 36939128 -105332316 - AluSq/x SINE Alu -205 107 2 184 308 108 0 chr9 36939134 36939199 -105332245 + L2 LINE L2 2213 2284 -1030 573 271 69 45 chr9 36939230 36939309 -105332135 - MIR SINE MIR -2 260 184 1961 139 30 0 chr9 36939309 36939610 -105331834 + AluJb SINE Alu 1 310 -2 573 271 69 45 chr9 36939610 36939689 -105331755 - MIR SINE MIR -78 184 108 2089 126 13 3 chr9 36939689 36939990 -105331454 + AluSx SINE Alu 1 304 -8 573 271 69 45 chr9 36939990 36940077 -105331367 - MIR SINE MIR -154 108 8 381 176 0 0 chr9 36940863 36940931 -105330513 + L1MB3 LINE L1 6077 6144 -39 871 113 0 23 chr9 36940931 36941064 -105330380 + AluJ SINE Alu 1 130 -172 1196 96 0 42 chr9 36941066 36941089 -105330355 + AluJ SINE Alu 136 158 -154 3560 94 28 20 chr9 36941089 36941633 -105329811 - LTR14 LTR ERVK 0 548 1 1196 96 0 42 chr9 36941633 36941776 -105329668 + AluJ SINE Alu 158 295 -17 319 314 12 12 chr9 36942393 36942565 -105328879 + (CA)n Simple_repeat Simple_repeat 1 172 0 195 42 0 0 chr9 36942618 36942642 -105328802 + (CA)n Simple_repeat Simple_repeat 1 24 0 325 102 0 0 chr9 36943176 36943225 -105328219 - MLT1D LTR MaLR -3 502 454 1237 92 69 0 chr9 36943226 36943399 -105328045 + AluSg/x SINE Alu 122 306 -4 1941 146 82 31 chr9 36943401 36943825 -105327619 - MLT1D LTR MaLR -58 447 2 224 286 0 44 chr9 36943872 36943963 -105327481 - MIR SINE MIR -110 152 66 633 251 73 81 chr9 36943978 36944182 -105327262 - HAL1b LINE L1 -44 1304 1100 2615 55 0 3 chr9 36944182 36944489 -105326955 + AluY SINE Alu 1 306 -5 633 251 73 81 chr9 36944489 36944649 -105326795 - HAL1b LINE L1 -248 1100 942 2153 136 7 0 chr9 36944649 36944959 -105326485 + AluJb SINE Alu 1 312 0 633 251 73 81 chr9 36944959 36945075 -105326369 - HAL1b LINE L1 -406 942 827 2160 85 88 20 chr9 36945087 36945441 -105326003 - Tigger2 DNA MER2_type -61 2657 2280 412 123 0 0 chr9 36945455 36945512 -105325932 + MER8 DNA MER2_type 183 239 0 1352 258 110 58 chr9 36945513 36945940 -105325504 - HAL1b LINE L1 -575 1585 1182 796 150 0 8 chr9 36945940 36946073 -105325371 - FLAM_C SINE Alu -1 132 1 1352 258 110 58 chr9 36946073 36946365 -105325079 - HAL1b LINE L1 -978 1182 70 576 175 19 0 chr9 36947878 36947981 -105323463 + MER81 DNA DNA 2 106 -8 255 213 16 47 chr9 36948823 36948950 -105322494 + (CAGAGA)n Simple_repeat Simple_repeat 3 125 0 370 265 27 27 chr9 36949043 36949181 -105322263 + (CAGAGA)n Simple_repeat Simple_repeat 2 142 -6 2416 87 7 0 chr9 36949181 36949490 -105321954 + AluSx SINE Alu 1 311 -1 370 265 27 27 chr9 36949490 36949498 -105321946 + (CAGAGA)n Simple_repeat Simple_repeat 141 148 0 22 35 0 0 chr9 36952412 36952441 -105319003 + GC_rich Low_complexity Low_complexity 1 29 0 183 311 81 0 chr9 36954940 36955014 -105316430 - L2 LINE L2 -304 3009 2930 265 246 66 0 chr9 36955441 36955502 -105315942 - L2 LINE L2 -6 3266 3202 23 54 0 0 chr9 36956012 36956049 -105315395 + GC_rich Low_complexity Low_complexity 1 37 0 768 203 136 25 chr9 36957927 36958163 -105313281 + MIR SINE MIR 1 262 0 2105 134 0 13 chr9 36958395 36958693 -105312751 + AluJb SINE Alu 1 294 -18 2119 115 28 3 chr9 36958695 36958982 -105312462 + AluSx SINE Alu 1 294 -18 2444 87 0 0 chr9 36958984 36959283 -105312161 + AluSg SINE Alu 1 299 -11 1318 117 5 25 chr9 36959283 36959479 -105311965 + AluSg SINE Alu 1 192 -118 21 0 0 0 chr9 36959603 36959624 -105311820 + AT_rich Low_complexity Low_complexity 1 21 0 244 323 71 24 chr9 36960094 36960348 -105311096 + L2 LINE L2 1806 2071 -1243 * 383 277 191 11 chr9 36960334 36960529 -105310915 - MIR SINE MIR 0 262 35 2259 111 0 40 chr9 36960672 36960997 -105310447 - AluSx SINE Alu 0 312 1 746 270 93 0 chr9 36961006 36961306 -105310138 - L1ME4a LINE L1 -273 5848 5521 1496 161 0 21 chr9 36962438 36962674 -105308770 + AluSx SINE Alu 1 231 -81 1209 179 27 5 chr9 36962854 36963077 -105308367 + AluJo SINE Alu 85 312 0 756 152 0 0 chr9 36963078 36963210 -105308234 + GA-rich Low_complexity Low_complexity 2 133 0 1680 127 107 4 chr9 36963357 36963609 -105307835 + AluSx SINE Alu 1 278 -34 1976 147 0 18 chr9 36964834 36965152 -105306292 + AluSx SINE Alu 1 313 0 264 109 0 0 chr9 36965160 36965206 -105306238 + L1MB3 LINE L1 6131 6176 -7 1860 153 0 18 chr9 36966739 36967020 -105304424 + AluJb SINE Alu 1 276 -36 312 27 0 0 chr9 36967020 36967057 -105304387 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr9 36967056 36967092 -105304352 + (GA)n Simple_repeat Simple_repeat 1 36 0 232 259 19 0 chr9 36967568 36967622 -105303822 - MER5A DNA MER1_type -125 64 10 353 339 88 6 chr9 36967886 36968057 -105303387 - MIR SINE MIR -5 257 73 361 277 85 7 chr9 36968113 36968254 -105303190 + MARNA DNA Mariner 25 176 -410 463 342 66 57 chr9 36968491 36968554 -105302890 - L2 LINE L2 -17 3255 3194 1736 141 56 11 chr9 36968554 36968823 -105302621 + AluJb SINE Alu 1 281 -31 463 342 66 57 chr9 36968823 36969628 -105301816 - L2 LINE L2 -78 3194 2372 1861 155 17 3 chr9 36970483 36970773 -105300671 - AluJb SINE Alu -18 294 1 2050 94 4 0 chr9 36970900 36971193 -105300251 + AluSq SINE Alu 26 319 0 181 264 83 0 chr9 36972693 36972765 -105298679 + L2 LINE L2 2825 2902 -411 1365 122 19 42 chr9 36972856 36973069 -105298375 - AluJb SINE Alu -20 292 85 918 146 0 0 chr9 36975899 36976036 -105295408 + FLAM_C SINE Alu 5 141 -2 2273 73 0 0 chr9 36976043 36976315 -105295129 + AluY SINE Alu 40 311 0 952 191 19 0 chr9 36976328 36976518 -105294926 + AluJb SINE Alu 118 310 0 224 217 0 0 chr9 36977005 36977051 -105294393 + (CA)n Simple_repeat Simple_repeat 1 46 0 669 200 0 22 chr9 36977244 36977379 -105294065 + FLAM_A SINE Alu 1 132 -1 250 264 104 0 chr9 36977394 36977500 -105293944 - L1ME4a LINE L1 -16 6105 5989 429 249 132 7 chr9 36977572 36977734 -105293710 + MIR SINE MIR 2 193 -15 347 283 177 30 chr9 36977976 36978372 -105293072 + L2 LINE L2 1859 2312 -1002 685 206 0 0 chr9 36978522 36978648 -105292796 - FLAM_C SINE Alu -17 126 1 328 183 0 14 chr9 36978648 36978719 -105292725 - L1MD3 LINE L1 -17 7978 7909 980 135 45 19 chr9 36978719 36978957 -105292487 - L1MD3 LINE L1 -688 7104 6845 183 391 35 30 chr9 36979041 36979238 -105292206 + L2 LINE L2 2571 2768 -546 2836 32 0 0 chr9 36979571 36979881 -105291563 + AluY SINE Alu 1 310 -1 217 273 153 30 chr9 36980052 36980219 -105291225 - MIR SINE MIR -46 216 23 2128 130 0 3 chr9 36980463 36980771 -105290673 - AluSx SINE Alu 0 307 1 343 250 15 37 chr9 36981327 36981463 -105289981 - L1MC4a LINE L1 -1941 5867 5735 2138 131 3 0 chr9 36981464 36981755 -105289689 - AluSx SINE Alu -20 292 1 36 77 0 0 chr9 36981812 36981890 -105289554 + AT_rich Low_complexity Low_complexity 1 78 0 2008 127 17 27 chr9 36981896 36982196 -105289248 - AluJo SINE Alu -15 297 1 399 182 81 61 chr9 36982218 36982366 -105289078 - L1MC4a LINE L1 -437 5684 5534 352 318 125 5 chr9 36982371 36982563 -105288881 + MIR SINE MIR 14 228 -34 393 255 245 20 chr9 36983195 36983391 -105288053 + MIR SINE MIR 2 241 -21 5032 119 109 97 chr9 36983393 36984930 -105286514 + pTR5 LTR ERV1 145 2438 0 192 40 0 0 chr9 36985003 36985028 -105286416 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 479 323 40 21 chr9 36985204 36985525 -105285919 - L2 LINE L2 -216 3056 2739 2378 60 3 30 chr9 36986219 36986520 -105284924 + AluY SINE Alu 1 293 -18 683 210 253 0 chr9 36986524 36986753 -105284691 - L1ME LINE L1 -5069 1136 850 589 329 9 9 chr9 36986775 36987006 -105284438 - L1ME LINE L1 -6121 275 45 1862 144 48 3 chr9 36987052 36987225 -105284219 - AluJo SINE Alu -8 304 111 396 40 0 0 chr9 36987225 36987275 -105284169 + (TG)n Simple_repeat Simple_repeat 2 51 0 1862 144 48 3 chr9 36987275 36987392 -105284052 - AluJo SINE Alu -201 111 1 200 219 0 0 chr9 36988556 36988597 -105282847 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 273 325 106 0 chr9 36988597 36988720 -105282724 - L2 LINE L2 0 3272 3137 314 291 31 8 chr9 36989384 36989511 -105281933 + L2 LINE L2 1577 1706 -1608 643 346 47 7 chr9 36989527 36989825 -105281619 + L2 LINE L2 1821 2130 -1184 524 289 38 51 chr9 36989918 36990153 -105281291 - L2 LINE L2 -2 3311 3080 801 316 23 26 chr9 36990310 36990652 -105280792 - L2 LINE L2 -454 2860 2520 1254 225 74 74 chr9 36991400 36991885 -105279559 + L2 LINE L2 2825 3309 -4 371 314 32 0 chr9 36992139 36992263 -105279181 - L2 LINE L2 0 3272 3145 782 216 39 43 chr9 36993179 36993411 -105278033 + L1ME1 LINE L1 5930 6160 -6 2208 107 13 10 chr9 36993436 36993567 -105277877 + AluSq SINE Alu 5 134 -179 2361 71 0 14 chr9 36993567 36993883 -105277561 + AluY SINE Alu 1 311 0 2208 107 13 10 chr9 36993883 36994059 -105277385 + AluSq SINE Alu 134 313 0 1976 167 0 0 chr9 36994963 36995275 -105276169 + AluSx SINE Alu 1 312 0 20392 47 9 0 chr9 36996691 37000144 -105271300 + L1PA5 LINE L1 2689 6149 -5 195 69 0 0 chr9 37001271 37001300 -105270144 + (GGA)n Simple_repeat Simple_repeat 3 31 0 231 329 66 13 chr9 37001449 37001601 -105269843 + MLT1K LTR MaLR 381 540 -48 316 277 10 0 chr9 37001603 37001704 -105269740 + L2 LINE L2 2170 2271 -1043 213 329 160 31 chr9 37001712 37002062 -105269382 + L2 LINE L2 2406 2800 -514 525 175 97 0 chr9 37002428 37002542 -105268902 - MIR SINE MIR -84 178 54 296 274 126 15 chr9 37002557 37002692 -105268752 - L2 LINE L2 -1015 2299 2150 294 173 0 0 chr9 37003521 37003596 -105267848 + (CCGAG)n Simple_repeat Simple_repeat 5 79 0 201 217 0 33 chr9 37004035 37004095 -105267349 + (CAGAGA)n Simple_repeat Simple_repeat 2 59 0 290 271 8 8 chr9 37004168 37004290 -105267154 + (CAGAGA)n Simple_repeat Simple_repeat 4 125 0 539 176 29 0 chr9 37007313 37007415 -105264029 + MIR SINE MIR 33 137 -71 324 254 97 74 chr9 37009019 37009236 -105262208 + L2 LINE L2 2271 2492 -822 2226 118 6 16 chr9 37009710 37010025 -105261419 + AluSx SINE Alu 1 312 0 560 273 108 26 chr9 37010025 37010219 -105261225 - MIR SINE MIR -2 260 51 194 234 0 21 chr9 37011875 37011922 -105259522 + L2 LINE L2 3005 3050 -222 434 260 79 0 chr9 37013548 37013675 -105257769 + MIR SINE MIR 121 257 -5 223 327 28 9 chr9 37015204 37015311 -105256133 + L2 LINE L2 2224 2332 -982 655 24 0 0 chr9 37015336 37015420 -105256024 - AluYb8 SINE Alu 0 318 235 278 299 43 34 chr9 37015573 37015690 -105255754 + L2 LINE L2 2635 2752 -562 185 323 10 10 chr9 37015988 37016084 -105255360 + L2 LINE L2 2963 3058 -214 208 306 41 0 chr9 37016236 37016334 -105255110 + (TGAG)n Simple_repeat Simple_repeat 2 103 0 2339 157 18 32 chr9 37017624 37018064 -105253380 + Tigger2a DNA MER2_type 1 434 0 2616 144 49 26 chr9 37019698 37020192 -105251252 + MLT1D LTR MaLR 1 505 0 217 254 88 79 chr9 37022348 37022462 -105248982 - MIR SINE MIR -80 182 68 265 335 111 6 chr9 37023536 37023875 -105247569 + L2 LINE L2 2557 2998 -274 278 368 132 0 chr9 37023924 37024060 -105247384 + L2 LINE L2 3119 3272 0 654 198 123 21 chr9 37024591 37024778 -105246666 + MIR SINE MIR 57 262 0 420 302 141 38 chr9 37025046 37025414 -105246030 + L2 LINE L2 2351 2756 -558 566 328 93 41 chr9 37025499 37025844 -105245600 + L2 LINE L2 2909 3271 -1 822 268 28 40 chr9 37026812 37027062 -105244382 + MIR SINE MIR 8 254 -8 255 262 217 51 chr9 37027650 37027825 -105243619 + MIR3 SINE MIR 13 203 -59 310 263 40 72 chr9 37028572 37028724 -105242720 - MIR3 SINE MIR -32 176 30 575 299 23 32 chr9 37028997 37029214 -105242230 + MIR SINE MIR 12 226 -36 269 294 117 12 chr9 37029515 37029678 -105241766 - L3 LINE CR1 -214 1363 1184 500 259 184 33 chr9 37029694 37029906 -105241538 - MIR SINE MIR 0 262 19 245 280 97 11 chr9 37029974 37030067 -105241377 - L3 LINE CR1 -508 1069 969 1958 147 0 3 chr9 37032444 37032729 -105238715 + AluJb SINE Alu 1 284 -28 378 0 0 0 chr9 37032729 37032771 -105238673 + (TA)n Simple_repeat Simple_repeat 2 43 0 376 341 60 11 chr9 37033079 37033261 -105238183 - MIR SINE MIR -50 212 22 2265 96 0 14 chr9 37035404 37035697 -105235747 - AluSc SINE Alu -20 289 1 331 319 35 43 chr9 37036355 37036496 -105234948 - MIR3 SINE MIR -23 185 46 387 268 24 24 chr9 37036502 37036625 -105234819 - L2 LINE L2 -1 3312 3190 718 295 60 13 chr9 37036935 37037169 -105234275 + MIR SINE MIR 8 252 -10 2450 66 0 10 chr9 37037779 37038080 -105233364 + AluY SINE Alu 1 298 -13 2791 164 20 2 chr9 37038163 37038657 -105232787 + L1MB8 LINE L1 5676 6178 0 30 59 0 0 chr9 37038771 37038822 -105232622 + AT_rich Low_complexity Low_complexity 1 51 0 327 300 86 38 chr9 37038839 37039049 -105232395 + MIR SINE MIR 31 250 -12 869 223 98 101 chr9 37040711 37041019 -105230425 + L1ME4a LINE L1 5386 5693 -428 2224 138 3 0 chr9 37041019 37041330 -105230114 - AluSx SINE Alu 0 312 1 869 223 98 101 chr9 37041330 37041703 -105229741 + L1ME4a LINE L1 5693 6065 -56 6573 118 84 161 chr9 37041922 37043758 -105227686 + pTR5 LTR ERV1 743 2438 0 2166 94 10 14 chr9 37044017 37044305 -105227139 - AluSq SINE Alu -26 287 1 2085 113 7 10 chr9 37044307 37044600 -105226844 - AluSx SINE Alu -17 295 4 183 308 121 33 chr9 37044606 37044697 -105226747 - L2 LINE L2 -240 3032 2934 2065 122 41 0 chr9 37044699 37044993 -105226451 + AluSx SINE Alu 1 306 -6 364 253 77 100 chr9 37045173 37045343 -105226101 + MIR3 SINE MIR 25 190 -18 285 308 0 19 chr9 37046534 37046641 -105224803 - 7SK RNA RNA -86 107 3 231 242 167 0 chr9 37046676 37046742 -105224702 + L2 LINE L2 3156 3232 -40 1700 132 0 0 chr9 37047079 37047314 -105224130 + AluSx SINE Alu 1 235 -77 216 0 0 0 chr9 37047316 37047340 -105224104 + (A)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr9 37047340 37047361 -105224083 + (GA)n Simple_repeat Simple_repeat 2 22 0 717 253 6 0 chr9 37047765 37047923 -105223521 - MIR SINE MIR -16 246 88 1426 170 0 12 chr9 37048017 37048258 -105223186 + AluJo SINE Alu 71 308 -4 339 338 45 0 chr9 37049062 37049195 -105222249 - MIR SINE MIR -5 257 119 24 0 0 0 chr9 37049415 37049439 -105222005 + AT_rich Low_complexity Low_complexity 1 24 0 765 243 4 98 chr9 37049471 37049726 -105221718 + MIR SINE MIR 23 253 -9 265 206 15 73 chr9 37050148 37050216 -105221228 + L2 LINE L2 3204 3267 -5 393 291 17 101 chr9 37050242 37050400 -105221044 + L1MC4a LINE L1 5506 5676 -2132 2560 84 0 0 chr9 37050400 37050709 -105220735 + AluSg SINE Alu 2 310 0 393 291 17 101 chr9 37050709 37050729 -105220715 + L1MC4a LINE L1 5676 5696 -2112 2107 142 0 6 chr9 37050729 37051040 -105220404 + AluJb SINE Alu 1 309 -3 393 291 17 101 chr9 37051040 37051207 -105220237 + L1MC4a LINE L1 5696 5823 -1985 871 73 78 92 chr9 37051214 37051238 -105220206 + L1MA8 LINE L1 6084 6107 -184 1799 165 3 11 chr9 37051238 37051523 -105219921 + AluJo SINE Alu 1 283 -29 333 93 0 0 chr9 37051523 37051577 -105219867 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 871 73 78 92 chr9 37051577 37051674 -105219770 + L1MA8 LINE L1 6106 6205 -86 2172 109 3 0 chr9 37051674 37051992 -105219452 + AluSx SINE Alu 1 319 0 871 73 78 92 chr9 37051992 37052073 -105219371 + L1MA8 LINE L1 6205 6286 -5 301 256 12 12 chr9 37052098 37052184 -105219260 + L1MC4a LINE L1 5813 5898 -1910 1847 183 3 0 chr9 37052351 37052646 -105218798 - AluJb SINE Alu -16 296 1 642 322 35 4 chr9 37052872 37053102 -105218342 + MIR SINE MIR 8 244 -18 346 151 9 85 chr9 37053380 37053486 -105217958 - L1MEc LINE L1 -2200 4015 3918 2029 121 7 7 chr9 37053487 37053776 -105217668 - AluSg SINE Alu -19 291 3 1938 141 9 52 chr9 37053795 37054121 -105217323 - AluJb SINE Alu 0 312 1 1731 240 90 56 chr9 37054125 37055378 -105216066 - L1MEc LINE L1 -3113 3102 1841 1909 169 3 10 chr9 37055386 37055700 -105215744 + AluSx SINE Alu 1 312 0 889 121 23 30 chr9 37055721 37055853 -105215591 + AluJo SINE Alu 23 153 -159 217 296 9 0 chr9 37056088 37056196 -105215248 + (CA)n Simple_repeat Simple_repeat 1 109 0 21 0 0 0 chr9 37057324 37057345 -105214099 + AT_rich Low_complexity Low_complexity 1 21 0 371 259 35 12 chr9 37057812 37057897 -105213547 - MIR3 SINE MIR -50 158 72 328 198 210 0 chr9 37057948 37058029 -105213415 - L2 LINE L2 -6 3307 3210 1670 200 128 18 chr9 37058030 37058476 -105212968 + L1ME3 LINE L1 5502 5996 -166 1336 177 99 31 chr9 37058488 37058810 -105212634 + MER2 DNA MER2_type 1 344 0 2313 77 0 21 chr9 37058838 37059144 -105212300 + AluY SINE Alu 1 300 0 201 214 0 0 chr9 37059632 37059674 -105211770 + L2 LINE L2 3263 3304 -9 610 231 99 28 chr9 37060030 37060212 -105211232 + MIR SINE MIR 50 244 -18 202 290 52 32 chr9 37060217 37060372 -105211072 + (TCTCTG)n Simple_repeat Simple_repeat 4 161 0 240 184 40 13 chr9 37060844 37060920 -105210524 + (TCTCTG)n Simple_repeat Simple_repeat 1 78 0 321 258 5 43 chr9 37061733 37061919 -105209525 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 385 323 6 0 chr9 37061979 37062137 -105209307 + GA-rich Low_complexity Low_complexity 2 160 0 425 281 112 36 chr9 37063012 37063290 -105208154 + L2 LINE L2 2606 2904 -410 2305 91 3 3 chr9 37063487 37063784 -105207660 - AluSx SINE Alu -15 297 1 182 255 0 0 chr9 37064165 37064212 -105207232 - L2 LINE L2 -308 2964 2918 2404 93 6 3 chr9 37064331 37064643 -105206801 + AluSp SINE Alu 1 313 0 1116 238 75 39 chr9 37064794 37065155 -105206289 - L2 LINE L2 0 3313 2940 1652 198 51 70 chr9 37065607 37066077 -105205367 + MLT1C LTR MaLR 2 462 -5 861 307 132 35 chr9 37066104 37066823 -105204621 + L2 LINE L2 905 1714 -1600 195 69 0 0 chr9 37066823 37066852 -105204592 + (CAA)n Simple_repeat Simple_repeat 2 30 0 861 307 132 35 chr9 37066852 37066952 -105204492 + L2 LINE L2 1714 1803 -1511 2407 69 3 0 chr9 37068114 37068403 -105203041 + AluSp SINE Alu 1 290 -23 689 290 70 19 chr9 37072368 37072682 -105198762 + L2 LINE L2 2018 2347 -967 984 264 90 42 chr9 37072730 37073131 -105198313 + LTR16C LTR ERVL 72 491 0 257 228 191 62 chr9 37073202 37073443 -105198001 + L2 LINE L2 2463 2734 -580 290 313 17 28 chr9 37074960 37075136 -105196308 + GA-rich Low_complexity Low_complexity 5 178 0 283 260 0 0 chr9 37076251 37076351 -105195093 + (CAGA)n Simple_repeat Simple_repeat 1 100 0 298 265 31 20 chr9 37076745 37076843 -105194601 - MIR SINE MIR -139 123 25 258 32 0 0 chr9 37077178 37077209 -105194235 + (CA)n Simple_repeat Simple_repeat 1 31 0 218 264 35 40 chr9 37077396 37077570 -105193874 + GA-rich Low_complexity Low_complexity 2 174 0 226 208 13 65 chr9 37079489 37079566 -105191878 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 240 111 0 0 chr9 37081279 37081324 -105190120 + (CCCA)n Simple_repeat Simple_repeat 3 47 0 202 71 24 24 chr9 37083543 37083585 -105187859 + (CGGG)n Simple_repeat Simple_repeat 3 44 0 23 54 0 0 chr9 37083774 37083811 -105187633 + GC_rich Low_complexity Low_complexity 1 37 0 198 143 0 0 chr9 37083884 37083919 -105187525 + (CGAG)n Simple_repeat Simple_repeat 4 38 0 229 268 13 36 chr9 37085022 37085239 -105186205 + GA-rich Low_complexity Low_complexity 1 211 0 241 284 30 0 chr9 37085627 37085694 -105185750 - L3b LINE CR1 -191 1392 1324 743 309 45 4 chr9 37087224 37087467 -105183977 - MIR SINE MIR -1 261 9 451 256 24 72 chr9 37087509 37087613 -105183831 - MIR SINE MIR 0 262 155 1904 157 0 10 chr9 37087613 37087919 -105183525 + AluSx SINE Alu 1 303 -9 451 256 24 72 chr9 37087919 37088088 -105183356 - MIR SINE MIR -107 155 7 279 288 14 0 chr9 37090648 37090721 -105180723 - L2 LINE L2 -4 3268 3195 227 250 25 25 chr9 37090794 37090874 -105180570 - L2 LINE L2 -38 3234 3155 243 61 0 0 chr9 37095325 37095358 -105176086 + (CCG)n Simple_repeat Simple_repeat 2 34 0 183 139 0 0 chr9 37095407 37095443 -105176001 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 23 33 0 0 chr9 37095453 37095483 -105175961 + GC_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr9 37095511 37095574 -105175870 + GC_rich Low_complexity Low_complexity 1 63 0 192 40 0 0 chr9 37095808 37095833 -105175611 + (CA)n Simple_repeat Simple_repeat 1 25 0 1802 171 3 19 chr9 37149923 37150233 -105121211 - AluJb SINE Alu -7 305 1 2889 195 76 48 chr9 37150239 37150250 -105121194 - L1M4c LINE L1 -4116 2530 2521 918 145 0 0 chr9 37150250 37150381 -105121063 - FLAM_C SINE Alu -2 131 1 2889 195 76 48 chr9 37150381 37150702 -105120742 - L1M4c LINE L1 -4125 2521 2210 1915 142 48 0 chr9 37150702 37150991 -105120453 - AluJo SINE Alu -8 304 2 2889 195 76 48 chr9 37150991 37151002 -105120442 - L1M4c LINE L1 -4436 2210 2201 2314 113 0 0 chr9 37151002 37151302 -105120142 - AluSx SINE Alu -12 300 1 2889 195 76 48 chr9 37151302 37151402 -105120042 - L1M4c LINE L1 -4445 2201 2105 207 0 0 0 chr9 37151402 37151425 -105120019 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2889 195 76 48 chr9 37151425 37152200 -105119244 - L1M4c LINE L1 -4541 2105 1185 1067 217 31 25 chr9 37152323 37152645 -105118799 - L1M4c LINE L1 -5339 1203 880 246 314 113 44 chr9 37152799 37153092 -105118352 - L1M4c LINE L1 -6040 606 294 365 315 62 22 chr9 37153898 37154076 -105117368 - MER5A DNA MER1_type -3 186 2 183 80 0 0 chr9 37155709 37155734 -105115710 + (TTAGGG)n Simple_repeat Simple_repeat 4 28 0 1689 163 0 63 chr9 37155989 37156368 -105115076 - AluJb SINE Alu 0 312 1 216 183 0 67 chr9 37156681 37156741 -105114703 + (TTGGGG)n Simple_repeat Simple_repeat 5 60 0 2107 130 0 23 chr9 37158491 37158798 -105112646 - AluSx SINE Alu -12 300 1 2617 21 0 3 chr9 37159622 37159936 -105111508 + AluYb8 SINE Alu 1 313 0 1807 278 90 30 chr9 37160536 37160859 -105110585 + L2 LINE L2 1479 1781 -1533 306 0 0 0 chr9 37160859 37160893 -105110551 + (TC)n Simple_repeat Simple_repeat 1 34 0 2142 108 14 0 chr9 37160893 37161170 -105110274 - AluSq SINE Alu -32 281 1 1807 278 90 30 chr9 37161170 37161533 -105109911 + L2 LINE L2 1780 2207 -1107 727 263 147 71 chr9 37161579 37161960 -105109484 - L2 LINE L2 -616 2698 2289 334 298 114 9 chr9 37161973 37162087 -105109357 + L2 LINE L2 3138 3263 -9 215 278 69 28 chr9 37162226 37162298 -105109146 - L2 LINE L2 -8 3305 3231 278 295 93 43 chr9 37167708 37167847 -105103597 - MIR SINE MIR -60 202 60 6788 96 13 42 chr9 37170595 37171305 -105100139 - L1MA3 LINE L1 0 6305 5646 1893 138 3 46 chr9 37171305 37171609 -105099835 - AluJb SINE Alu -8 304 14 6788 96 13 42 chr9 37171609 37172190 -105099254 - L1MA3 LINE L1 -659 5646 5050 546 325 72 11 chr9 37172329 37172705 -105098739 - L1MC/D LINE L1 -1987 5821 5423 1655 177 3 17 chr9 37172964 37173263 -105098181 - AluJo SINE Alu -17 295 1 863 306 55 39 chr9 37173525 37174032 -105097412 + L1MCc LINE L1 73 587 -5836 1240 210 207 7 chr9 37174178 37174583 -105096861 + L1MCc LINE L1 827 1312 -5111 2490 90 0 3 chr9 37174584 37174895 -105096549 - AluSg SINE Alu 0 310 1 242 161 0 36 chr9 37175069 37175125 -105096319 + Alu SINE Alu 248 301 0 1629 256 45 67 chr9 37175125 37175622 -105095822 + L1MCc LINE L1 1380 1853 -5088 1911 156 10 3 chr9 37175622 37175911 -105095533 - AluJb SINE Alu -21 291 1 1629 256 45 67 chr9 37175911 37176250 -105095194 + L1MCc LINE L1 1853 2198 -4743 3641 166 18 14 chr9 37176328 37176986 -105094458 - L1MB5 LINE L1 0 6174 5514 646 258 144 63 chr9 37177061 37177603 -105093841 + MLT1G1 LTR MaLR 1 586 -9 2333 99 13 0 chr9 37177646 37177950 -105093494 - AluY SINE Alu -3 308 1 490 302 53 63 chr9 37177964 37178282 -105093162 + MLT1L LTR MaLR 193 507 -108 813 268 61 3 chr9 37178469 37178782 -105092662 + L1MC4a LINE L1 5385 5715 -2093 4315 109 180 116 chr9 37178782 37180019 -105091425 - pTR5 LTR ERV1 -2 2436 829 421 246 72 7 chr9 37180019 37180157 -105091287 + L1MC4a LINE L1 5707 5853 -1955 2162 131 0 0 chr9 37180177 37180490 -105090954 - AluSq SINE Alu 0 313 1 228 176 0 0 chr9 37180553 37180587 -105090857 - MLT1F LTR MaLR -506 36 3 2362 93 3 0 chr9 37180654 37180966 -105090478 - AluSp SINE Alu 0 313 1 21 0 0 0 chr9 37181880 37181901 -105089543 + AT_rich Low_complexity Low_complexity 1 21 0 894 144 0 0 chr9 37181901 37182033 -105089411 - FLAM_C SINE Alu 0 133 2 757 156 64 0 chr9 37182192 37182333 -105089111 + MER58A DNA MER1_type 43 192 -32 1997 201 47 13 chr9 37183070 37183453 -105087991 - MSTD LTR MaLR 0 396 1 444 111 0 0 chr9 37184808 37184871 -105086573 + MER41B LTR ERV1 573 635 0 277 265 235 0 chr9 37185447 37185549 -105085895 + MIR3 SINE MIR 43 168 -40 1820 117 8 0 chr9 37185574 37185840 -105085604 + AluSx SINE Alu 31 298 -14 2072 98 3 35 chr9 37186003 37186318 -105085126 - AluSc SINE Alu -4 305 1 224 170 19 0 chr9 37186384 37186437 -105085007 + GA-rich Low_complexity Low_complexity 1 54 0 394 229 68 42 chr9 37186604 37186722 -105084722 + L2 LINE L2 3191 3311 -2 420 256 39 64 chr9 37188851 37189007 -105082437 - L2 LINE L2 -633 2681 2530 1801 150 13 20 chr9 37190315 37190615 -105080829 + AluJo SINE Alu 1 298 -14 681 161 140 0 chr9 37192015 37192158 -105079286 - MER5B DNA MER1_type -15 163 1 241 217 24 36 chr9 37192464 37192547 -105078897 + G-rich Low_complexity Low_complexity 6 87 0 269 315 7 0 chr9 37193521 37193664 -105077780 + (TG)n Simple_repeat Simple_repeat 1 144 0 213 94 0 0 chr9 37194736 37194768 -105076676 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 261 57 0 0 chr9 37195299 37195334 -105076110 + (TG)n Simple_repeat Simple_repeat 1 35 0 1250 295 45 19 chr9 37196137 37196351 -105075093 - L2 LINE L2 -8 3305 3098 2089 91 30 14 chr9 37196351 37196647 -105074797 - AluSx SINE Alu -11 301 1 1250 295 45 19 chr9 37196647 37197013 -105074431 - L2 LINE L2 -215 3098 2703 1776 168 3 16 chr9 37198342 37198658 -105072786 - AluJo SINE Alu 0 312 1 187 270 54 0 chr9 37199116 37199190 -105072254 - L2 LINE L2 -35 3237 3160 2216 93 0 0 chr9 37199248 37199539 -105071905 - AluSg SINE Alu -19 291 1 421 284 226 24 chr9 37199690 37199898 -105071546 - MIR SINE MIR -1 261 12 229 268 0 18 chr9 37202523 37202579 -105068865 + (TTGGGG)n Simple_repeat Simple_repeat 1 55 0 222 91 0 0 chr9 37205701 37205734 -105065710 + (CGGGG)n Simple_repeat Simple_repeat 1 33 0 433 204 11 11 chr9 37206892 37206980 -105064464 - L2 LINE L2 0 3313 3226 2235 65 0 0 chr9 37206982 37207282 -105064162 + AluSg1 SINE Alu 1 300 0 4739 83 4 82 chr9 37208882 37209602 -105061842 + MER4A LTR ERV1 1 664 0 1590 266 64 79 chr9 37210033 37210756 -105060688 + MER21B LTR ERV1 3 714 -149 2204 179 112 16 chr9 37211580 37212010 -105059434 - MER70A LTR ERVL 0 472 2 423 0 0 0 chr9 37212124 37212171 -105059273 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 213 295 25 25 chr9 37212192 37212314 -105059130 + (TTCA)n Simple_repeat Simple_repeat 3 124 0 237 216 193 11 chr9 37212330 37212418 -105059026 - MIR SINE MIR -2 260 157 257 359 61 35 chr9 37212545 37212743 -105058701 + MLT1K LTR MaLR 172 374 -214 2179 135 71 6 chr9 37212743 37213107 -105058337 - MSTC LTR MaLR 0 428 41 940 160 0 53 chr9 37213107 37213295 -105058149 - FRAM SINE Alu 0 176 1 413 57 0 0 chr9 37213295 37213348 -105058096 - MSTC LTR MaLR -375 53 1 1867 158 7 0 chr9 37213394 37213692 -105057752 + AluSx SINE Alu 5 304 -8 334 288 12 81 chr9 37213709 37213775 -105057669 + MLT1K LTR MaLR 436 505 -83 1466 189 40 3 chr9 37213775 37213940 -105057504 - AluSx SINE Alu 0 312 130 2363 74 0 0 chr9 37213940 37214237 -105057207 - AluY SINE Alu -14 297 1 1466 189 40 3 chr9 37214237 37214372 -105057072 - AluSx SINE Alu -182 130 1 334 288 12 81 chr9 37214372 37214465 -105056979 + MLT1K LTR MaLR 505 584 -4 340 240 59 33 chr9 37214474 37214618 -105056826 - MIR SINE MIR -62 146 7 1359 179 14 0 chr9 37214728 37214946 -105056498 - MER58A DNA MER1_type 0 224 4 209 250 0 0 chr9 37215059 37215119 -105056325 + (TG)n Simple_repeat Simple_repeat 2 61 0 1821 139 33 3 chr9 37215171 37215473 -105055971 - AluJb SINE Alu 0 312 2 293 241 209 37 chr9 37216166 37216353 -105055091 - L2 LINE L2 -213 3059 2841 1861 130 4 0 chr9 37216558 37216835 -105054609 + AluJb SINE Alu 1 278 -34 1031 291 85 55 chr9 37216855 37216928 -105054516 + L2 LINE L2 2254 2323 -991 2637 166 17 0 chr9 37216928 37217349 -105054095 - MSTA LTR MaLR 0 428 1 1031 291 85 55 chr9 37217349 37217706 -105053738 + L2 LINE L2 2323 2711 -603 2429 62 0 7 chr9 37217706 37218014 -105053430 - AluY SINE Alu -5 306 1 1031 291 85 55 chr9 37218014 37218205 -105053239 + L2 LINE L2 2711 2895 -419 3013 51 20 69 chr9 37218235 37218640 -105052804 + MLT2A1 LTR ERVL 3 426 -18 2019 115 23 7 chr9 37218640 37218945 -105052499 - AluSq SINE Alu -3 310 1 2171 113 3 0 chr9 37218945 37219246 -105052198 - AluSx SINE Alu -9 303 1 3013 51 20 69 chr9 37219246 37219287 -105052157 + MLT2A1 LTR ERVL 424 428 -16 510 267 144 7 chr9 37219336 37219482 -105051962 + LTR67 LTR ERVL 96 261 -296 333 228 13 0 chr9 37219502 37219581 -105051863 + HERVL LTR ERVL 3122 3201 -2453 395 368 19 0 chr9 37219581 37219790 -105051654 + HERVL LTR ERVL 3513 3725 -1929 1872 89 0 0 chr9 37219790 37220036 -105051408 + AluSc SINE Alu 40 285 -24 802 193 81 0 chr9 37220036 37220197 -105051247 + MLT1E1 LTR MaLR 339 512 -142 25 0 0 0 chr9 37220201 37220226 -105051218 + AT_rich Low_complexity Low_complexity 1 25 0 821 217 0 0 chr9 37220252 37220409 -105051035 + MLT1E1 LTR MaLR 498 654 0 2217 107 3 0 chr9 37220410 37220720 -105050724 + AluSx SINE Alu 1 311 -1 2689 26 0 0 chr9 37220723 37221034 -105050410 + AluYa5 SINE Alu 1 311 0 711 276 39 78 chr9 37221293 37221626 -105049818 + MLT1I LTR MaLR 87 406 -3 528 148 104 9 chr9 37221737 37221845 -105049599 + MLT1A2 LTR MaLR 1 122 -268 2265 113 0 0 chr9 37221845 37222156 -105049288 + AluSx SINE Alu 1 311 -1 666 118 13 92 chr9 37222693 37222727 -105048717 + MLT1A2 LTR MaLR 233 268 -106 1492 146 51 61 chr9 37222727 37223021 -105048423 - AluJb SINE Alu -21 291 1 666 118 13 92 chr9 37223021 37223138 -105048306 + MLT1A2 LTR MaLR 268 372 -2 513 309 85 49 chr9 37223427 37223649 -105047795 + LTR67 LTR ERVL 87 316 -241 2425 306 19 24 chr9 37223649 37223791 -105047653 - MER115 DNA AcHobo 0 693 552 2338 106 0 0 chr9 37223791 37224102 -105047342 - AluSx SINE Alu -1 311 1 2425 306 19 24 chr9 37224102 37224656 -105046788 - MER115 DNA AcHobo -141 552 1 432 215 99 35 chr9 37224697 37224869 -105046575 + LTR67 LTR ERVL 367 549 -8 415 306 16 8 chr9 37224877 37225001 -105046443 + L2 LINE L2 3163 3287 -26 231 200 73 0 chr9 37225146 37225201 -105046243 + MER91C DNA MER1_type 51 109 -31 522 328 78 0 chr9 37226336 37226540 -105044904 + MIR SINE MIR 37 256 -6 601 271 26 7 chr9 37226630 37226785 -105044659 + MIR SINE MIR 4 161 -101 359 231 42 100 chr9 37228137 37228307 -105043137 - MIR3 SINE MIR -28 180 16 235 243 16 0 chr9 37228590 37228724 -105042720 + (TGGA)n Simple_repeat Simple_repeat 1 136 0 583 294 125 30 chr9 37229533 37229836 -105041608 - L2 LINE L2 0 3272 2941 576 51 64 0 chr9 37230249 37230327 -105041117 - HY3 scRNA scRNA -1 100 18 405 0 0 0 chr9 37231166 37231211 -105040233 + (TG)n Simple_repeat Simple_repeat 2 46 0 553 265 87 55 chr9 37232998 37233251 -105038193 - MIR SINE MIR 0 262 2 485 311 87 0 chr9 37233306 37233502 -105037942 + MIR SINE MIR 29 241 -21 2110 129 0 43 chr9 37233516 37233842 -105037602 - AluSx SINE Alu 0 312 1 285 309 0 0 chr9 37233843 37233924 -105037520 + (TCCA)n Simple_repeat Simple_repeat 4 84 0 783 244 68 8 chr9 37233928 37234162 -105037282 + LTR33 LTR ERVL 2 249 -272 862 265 5 0 chr9 37234166 37234351 -105037093 + MER5A DNA MER1_type 1 186 -3 491 209 93 7 chr9 37234362 37234501 -105036943 + L1M4c LINE L1 1230 1380 -5004 348 250 0 10 chr9 37234515 37234619 -105036825 - L1M4c LINE L1 -4563 1821 1719 269 239 30 0 chr9 37234642 37234709 -105036735 - L1M4c LINE L1 -4648 1736 1668 378 82 0 0 chr9 37234709 37234758 -105036686 + AluSg/x SINE Alu 70 118 -182 272 61 0 0 chr9 37234766 37234799 -105036645 + AluSp/q SINE Alu 165 197 -106 2008 129 0 14 chr9 37234901 37235078 -105036366 - AluSx SINE Alu -2 310 137 2378 88 0 7 chr9 37235078 37235374 -105036070 - AluSq SINE Alu -19 294 1 2008 129 0 14 chr9 37235374 37235490 -105035954 - AluSx SINE Alu -175 137 21 532 259 25 12 chr9 37235499 37235661 -105035783 + LTR33 LTR ERVL 323 486 -35 4417 167 18 62 chr9 37235662 37236542 -105034902 + MER21B LTR ERV1 1 841 -22 281 159 0 0 chr9 37236561 37236605 -105034839 + LTR33 LTR ERVL 478 521 0 2216 119 3 0 chr9 37236947 37237249 -105034195 + AluSx SINE Alu 1 303 -9 359 310 35 35 chr9 37237391 37237536 -105033908 + ERVL LTR ERVL 542 686 -4968 284 173 156 150 chr9 37237955 37238068 -105033376 - MER5A DNA MER1_type -6 183 67 2326 102 0 0 chr9 37238068 37238361 -105033083 - AluSx SINE Alu -19 293 1 284 173 156 150 chr9 37238361 37238420 -105033024 - MER5A DNA MER1_type -122 67 10 820 336 80 21 chr9 37238424 37239028 -105032416 + ERVL LTR ERVL 1217 1905 -3851 1943 115 62 3 chr9 37239233 37239521 -105031923 - AluSp SINE Alu -8 305 1 813 280 129 19 chr9 37239541 37239912 -105031532 + ERVL LTR ERVL 3097 3508 -2146 779 251 35 0 chr9 37240006 37240209 -105031235 + ERVL LTR ERVL 3684 3893 -1871 486 226 0 10 chr9 37240219 37240321 -105031123 + LTR33 LTR ERVL 421 521 0 2298 224 142 10 chr9 37240460 37241566 -105029878 - L2 LINE L2 -3 3310 2078 961 198 0 0 chr9 37243384 37243561 -105027883 + AluJo SINE Alu 116 292 -20 2217 101 21 0 chr9 37243922 37244210 -105027234 - AluSx SINE Alu -18 294 1 504 75 0 0 chr9 37244396 37244463 -105026981 + MER41B LTR ERV1 481 547 -88 815 197 21 94 chr9 37244524 37244758 -105026686 - AluJb SINE Alu -94 218 2 1460 149 4 24 chr9 37244824 37245072 -105026372 - AluJo SINE Alu -69 243 1 195 42 0 0 chr9 37245220 37245244 -105026200 + (TG)n Simple_repeat Simple_repeat 2 25 0 2112 135 3 6 chr9 37245293 37245605 -105025839 + AluJo SINE Alu 1 311 -1 22 0 0 0 chr9 37246043 37246065 -105025379 + AT_rich Low_complexity Low_complexity 1 22 0 1294 156 156 12 chr9 37246065 37246322 -105025122 - AluJb SINE Alu -8 294 1 272 314 47 0 chr9 37246355 37246441 -105025003 - HAL1 LINE L1 -2417 90 1 773 144 0 0 chr9 37246523 37246641 -105024803 + FLAM_C SINE Alu 1 118 -15 21 36 0 0 chr9 37246641 37246669 -105024775 + AT_rich Low_complexity Low_complexity 1 28 0 491 228 137 25 chr9 37246932 37247173 -105024271 + HAL1 LINE L1 2118 2385 -122 901 158 57 0 chr9 37247581 37247739 -105023705 + FRAM SINE Alu 1 160 -16 2333 76 7 13 chr9 37248469 37248771 -105022673 - AluSq SINE Alu -13 300 1 810 294 35 0 chr9 37249685 37249995 -105021449 + L1ME3A LINE L1 3657 3977 -2169 1068 163 53 10 chr9 37250022 37250231 -105021213 + LTR52 LTR ERVL 202 419 -2 2871 234 64 35 chr9 37250234 37250483 -105020961 + L1ME3A LINE L1 5029 5269 -901 1579 187 3 36 chr9 37250483 37250788 -105020656 + AluJo SINE Alu 2 296 -16 2871 234 64 35 chr9 37250788 37251627 -105019817 + L1ME3A LINE L1 5269 6153 -17 1379 96 0 0 chr9 37251628 37251806 -105019638 + MSTA LTR MaLR 2 179 -249 15919 135 42 58 chr9 37251806 37252807 -105018637 + L1MA3 LINE L1 1677 2692 -5032 756 164 0 0 chr9 37252807 37252923 -105018521 + FLAM_C SINE Alu 1 116 -27 15919 135 42 58 chr9 37252923 37252962 -105018482 + L1MA3 LINE L1 2692 2730 -4994 1558 38 0 0 chr9 37252962 37253145 -105018299 - L1PA8 LINE L1 0 6172 5990 15919 135 42 58 chr9 37253145 37253623 -105017821 + L1MA3 LINE L1 2730 3214 -4510 1549 147 22 0 chr9 37253623 37253899 -105017545 + AluSx SINE Alu 55 335 0 15919 135 42 58 chr9 37253899 37254439 -105017005 + L1MA3 LINE L1 3214 3761 -3963 2262 118 0 0 chr9 37254439 37254743 -105016701 + AluSq SINE Alu 1 304 -9 15919 135 42 58 chr9 37254743 37258717 -105012727 + L1MA3 LINE L1 3761 7724 0 1414 95 68 16 chr9 37258719 37258971 -105012473 - L1M2 LINE L1 -768 5529 5265 26 30 0 0 chr9 37258973 37259006 -105012438 + AT_rich Low_complexity Low_complexity 1 33 0 925 198 0 12 chr9 37259006 37259168 -105012276 - FRAM SINE Alu -16 160 1 5079 158 29 42 chr9 37259169 37259480 -105011964 - L1 LINE L1 -874 5914 5601 2039 116 4 0 chr9 37259480 37259755 -105011689 - AluSp SINE Alu -37 276 1 5079 158 29 42 chr9 37259755 37260255 -105011189 - L1 LINE L1 -1187 5601 5117 2003 125 7 0 chr9 37260255 37260559 -105010885 - AluSg SINE Alu 0 306 1 5079 158 29 42 chr9 37260559 37260837 -105010607 - L1 LINE L1 -1671 5117 4837 * 8304 208 28 18 chr9 37260836 37262484 -105008960 - L1 LINE L1 -5120 1669 5 1436 218 27 7 chr9 37262638 37262932 -105008512 + LTR53 LTR ERVL 209 508 -11 1960 145 0 0 chr9 37264066 37264362 -105007082 + AluJb SINE Alu 1 296 -16 237 208 19 0 chr9 37264373 37264426 -105007018 - MER5A DNA MER1_type 0 189 136 1185 181 48 20 chr9 37264427 37264675 -105006769 - MER45B DNA AcHobo 0 1040 786 482 247 140 6 chr9 37264698 37264876 -105006568 - L2 LINE L2 0 3313 3112 45714 34 0 1 chr9 37265055 37271211 -105000233 - L1PA3 LINE L1 -3 6152 4 400 231 0 11 chr9 37271211 37271302 -105000142 - MER45B DNA AcHobo -242 798 709 1032 182 111 0 chr9 37271331 37271529 -104999915 - MER45B DNA AcHobo -711 329 110 494 272 80 42 chr9 37271756 37271969 -104999475 + MIR SINE MIR 7 227 -35 1080 284 85 44 chr9 37272121 37272254 -104999190 + L1MC3 LINE L1 4151 4277 -2114 249 33 0 0 chr9 37272254 37272284 -104999160 + (GA)n Simple_repeat Simple_repeat 1 30 0 1080 284 85 44 chr9 37272284 37272483 -104998961 + L1MC3 LINE L1 4277 4466 -1925 2185 95 7 20 chr9 37272483 37272777 -104998667 - AluSx SINE Alu -22 290 1 1080 284 85 44 chr9 37272777 37273879 -104997565 + L1MC3 LINE L1 4466 5643 -748 304 192 0 0 chr9 37273884 37273936 -104997508 + LTR16B LTR ERVL 413 464 0 255 239 22 22 chr9 37273936 37274028 -104997416 + L1MC3 LINE L1 5913 6004 -1804 2023 149 3 0 chr9 37274188 37274490 -104996954 + AluSq SINE Alu 1 303 -10 441 248 7 46 chr9 37274492 37274506 -104996938 - L1MC4a LINE L1 -2 7806 7793 1980 167 39 6 chr9 37274506 37274842 -104996602 - MER7A DNA MER2_type 0 346 2 441 248 7 46 chr9 37274842 37274980 -104996464 - L1MC4a LINE L1 -15 7793 7660 * 466 209 11 0 chr9 37274979 37275070 -104996374 - L1MD2 LINE L1 -216 6143 6052 542 269 60 10 chr9 37275568 37275769 -104995675 + L1ME LINE L1 5533 5743 -378 3462 151 20 39 chr9 37276029 37276348 -104995096 + L1MC3 LINE L1 6416 6717 -1068 2486 74 3 0 chr9 37276348 37276646 -104994798 - AluSp SINE Alu -14 299 1 3462 151 20 39 chr9 37276646 37276987 -104994457 + L1MC3 LINE L1 6717 7063 -722 2348 176 5 0 chr9 37277001 37277399 -104994045 + L1MC3 LINE L1 7290 7689 -96 4559 183 31 24 chr9 37277399 37277846 -104993598 + L1MB3 LINE L1 4934 5376 -807 2044 136 3 7 chr9 37277846 37278148 -104993296 + AluSq SINE Alu 1 301 -12 4559 183 31 24 chr9 37278148 37278927 -104992517 + L1MB3 LINE L1 5376 6180 -3 453 154 55 0 chr9 37278936 37279027 -104992417 + L1MC3 LINE L1 7690 7785 0 2761 176 32 11 chr9 37279050 37279583 -104991861 + L1MB8 LINE L1 5586 6129 -49 5962 211 88 29 chr9 37279672 37281548 -104989896 - L1M2 LINE L1 -4709 2140 17 4341 220 38 7 chr9 37281547 37282707 -104988737 + L1MB4 LINE L1 3469 4663 -2902 * 4317 184 50 41 chr9 37282753 37283077 -104988367 + L1MB4 LINE L1 5945 6265 -1334 2254 99 0 0 chr9 37283077 37283382 -104988062 - AluSq SINE Alu 0 305 1 4317 184 50 41 chr9 37283382 37283643 -104987801 + L1MB4 LINE L1 6265 6522 -1077 2074 121 47 0 chr9 37283643 37283941 -104987503 - AluJb SINE Alu 0 312 1 4317 184 50 41 chr9 37283941 37284988 -104986456 + L1MB4 LINE L1 6522 7597 -2 472 125 11 34 chr9 37284996 37285084 -104986360 + L1MB8 LINE L1 6093 6178 0 215 273 73 0 chr9 37286615 37286670 -104984774 - L3 LINE CR1 -1086 491 433 419 110 82 0 chr9 37286696 37286769 -104984675 + MER110A LTR ERV1 1 79 -389 639 194 101 73 chr9 37286772 37287020 -104984424 + MER110A LTR ERV1 214 468 0 1492 179 12 128 chr9 37288377 37288790 -104982654 - MLT1A1 LTR MaLR 0 365 1 429 165 13 0 chr9 37288908 37288987 -104982457 + MLT1D LTR MaLR 426 505 0 289 267 11 44 chr9 37289341 37289431 -104982013 + L2 LINE L2 3184 3270 -43 26 0 0 0 chr9 37289611 37289637 -104981807 + AT_rich Low_complexity Low_complexity 1 26 0 31 0 0 0 chr9 37290664 37290695 -104980749 + AT_rich Low_complexity Low_complexity 1 31 0 289 228 119 30 chr9 37291000 37291101 -104980343 + MER5A DNA MER1_type 79 188 -1 303 165 78 68 chr9 37291285 37291388 -104980056 - HAL1b LINE L1 0 1348 1245 1930 145 0 17 chr9 37291388 37291699 -104979745 - AluJo SINE Alu 0 306 1 3707 120 18 40 chr9 37292043 37292642 -104978802 + LTR60 LTR ERV1 1 586 0 2726 132 13 66 chr9 37293062 37293198 -104978246 - MER65A LTR ERV1 0 445 303 1853 164 3 10 chr9 37293198 37293503 -104977941 - AluJo SINE Alu -9 303 1 2726 132 13 66 chr9 37293503 37293836 -104977608 - MER65A LTR ERV1 -142 303 1 2557 274 126 56 chr9 37293918 37295480 -104975964 - L2 LINE L2 -33 3280 1618 2392 76 3 13 chr9 37295781 37296085 -104975359 + AluSp SINE Alu 1 301 -12 36 87 0 0 chr9 37296420 37296512 -104974932 + AT_rich Low_complexity Low_complexity 1 92 0 339 342 110 43 chr9 37296803 37297104 -104974340 + L1ME1 LINE L1 16 336 -6204 206 130 0 65 chr9 37297139 37297185 -104974259 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 2283 253 50 21 chr9 37297619 37298543 -104972901 + L1ME1 LINE L1 910 1820 -4720 682 168 44 0 chr9 37298549 37298662 -104972782 + AluJb SINE Alu 191 308 -4 809 208 84 69 chr9 37298662 37299009 -104972435 + L1ME1 LINE L1 1814 2165 -4375 * 1930 226 93 36 chr9 37299007 37299107 -104972337 + L1ME1 LINE L1 5074 5167 -1393 1623 190 19 16 chr9 37299107 37299418 -104972026 + AluJb SINE Alu 1 312 0 1930 226 93 36 chr9 37299418 37300467 -104970977 + L1ME1 LINE L1 5167 6289 -271 3329 156 51 50 chr9 37300471 37301292 -104970152 - LTR1 LTR ERV1 0 785 1 933 255 4 20 chr9 37301345 37301596 -104969848 + L1ME1 LINE L1 6295 6541 -19 5801 122 25 5 chr9 37301607 37302498 -104968946 - L1PA16 LINE L1 -4 6162 5254 530 285 75 0 chr9 37302653 37302853 -104968591 + MIR SINE MIR 47 261 -1 1315 198 21 0 chr9 37303301 37303538 -104967906 + L1PB4 LINE L1 5915 6156 0 7221 48 31 12 chr9 37303780 37304874 -104966570 + L1PA8 LINE L1 4711 5830 -342 2159 74 0 0 chr9 37304874 37305132 -104966312 + AluY SINE Alu 37 294 -17 7221 48 31 12 chr9 37305132 37305473 -104965971 + L1PA8 LINE L1 5830 6163 -9 489 265 54 67 chr9 37305552 37305775 -104965669 + MLT1K LTR MaLR 23 242 -346 449 278 128 75 chr9 37307341 37307607 -104963837 + MLT1K LTR MaLR 279 558 -30 399 286 8 30 chr9 37307954 37308087 -104963357 - MIR SINE MIR -110 152 23 6029 180 28 32 chr9 37308092 37309814 -104961630 - L1MB8 LINE L1 -6 6172 4445 213 39 0 0 chr9 37309814 37309840 -104961604 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6029 180 28 32 chr9 37309840 37309862 -104961582 - L1MB8 LINE L1 -1733 4445 4424 2150 125 0 0 chr9 37309862 37310151 -104961293 - AluSx SINE Alu -23 289 1 6029 180 28 32 chr9 37310151 37310647 -104960797 - L1MB8 LINE L1 -1754 4424 3940 22 0 0 0 chr9 37310877 37310899 -104960545 + AT_rich Low_complexity Low_complexity 1 22 0 603 271 91 20 chr9 37311477 37311676 -104959768 + MIR SINE MIR 2 214 -48 899 174 7 0 chr9 37311708 37311852 -104959592 + FRAM SINE Alu 1 144 -32 1245 210 9 103 chr9 37311883 37312252 -104959192 - MLT1A1 LTR MaLR 0 365 34 1542 29 6 0 chr9 37312253 37312462 -104958982 + L1PA3 LINE L1 5965 6174 0 31 0 0 0 chr9 37312637 37312668 -104958776 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 37313317 37313340 -104958104 + GC_rich Low_complexity Low_complexity 1 23 0 191 61 30 0 chr9 37313391 37313424 -104958020 + (CCG)n Simple_repeat Simple_repeat 2 35 0 344 254 225 14 chr9 37314426 37314564 -104956880 - MIR SINE MIR -15 247 81 2008 169 108 11 chr9 37314661 37315022 -104956422 + MSTD LTR MaLR 1 396 0 2101 154 38 47 chr9 37315059 37315482 -104955962 + L1M3 LINE L1 5008 5424 -756 700 197 7 36 chr9 37315482 37315619 -104955825 + FLAM_A SINE Alu 1 133 0 2101 154 38 47 chr9 37315619 37315858 -104955586 + L1M3 LINE L1 5424 5664 -516 2541 209 89 13 chr9 37316733 37317283 -104954161 - MLT1E LTR MaLR 0 593 2 1738 219 44 22 chr9 37317726 37318133 -104953311 + LTR40c LTR ERVL 47 462 -3 2073 105 39 0 chr9 37318138 37318423 -104953021 - AluSq SINE Alu -16 297 2 2349 94 0 0 chr9 37318705 37319014 -104952430 - AluY SINE Alu -2 309 1 238 45 45 23 chr9 37319469 37319513 -104951931 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 230 271 112 9 chr9 37319677 37319784 -104951660 - L1ME LINE L1 -320 5870 5753 2081 167 70 3 chr9 37319808 37320150 -104951294 - MLT1A1 LTR MaLR 0 365 1 371 123 68 0 chr9 37320479 37320552 -104950892 - L1MA4 LINE L1 -125 6175 6098 1017 203 280 34 chr9 37320553 37320644 -104950800 - L1ME LINE L1 -743 5504 5437 1809 152 0 0 chr9 37320644 37320908 -104950536 - AluJo SINE Alu -19 293 30 1017 203 280 34 chr9 37320908 37321350 -104950094 - L1ME LINE L1 -810 5437 4835 4372 249 52 47 chr9 37321352 37322072 -104949372 - L1ME LINE L1 -1752 4463 3748 709 156 92 0 chr9 37322072 37322181 -104949263 + AluJb SINE Alu 3 121 -191 4372 249 52 47 chr9 37322181 37323523 -104947921 - L1ME LINE L1 -2467 3748 2355 218 95 24 0 chr9 37323523 37323565 -104947879 + (TA)n Simple_repeat Simple_repeat 2 44 0 4372 249 52 47 chr9 37323565 37323619 -104947825 - L1ME LINE L1 -3860 2355 2303 * 6052 92 5 9 chr9 37323613 37324458 -104946986 - L1PA15 LINE L1 -2 6163 5323 1670 239 99 35 chr9 37324458 37324763 -104946681 - L1ME LINE L1 -4039 2357 2073 1998 250 105 51 chr9 37324763 37325392 -104946052 + MLT2F LTR ERVL 1 663 0 1670 239 99 35 chr9 37325392 37325800 -104945644 - L1ME LINE L1 -4323 2073 1598 793 178 115 0 chr9 37325777 37325951 -104945493 - L1MB7 LINE L1 0 6253 6060 * 302 323 43 30 chr9 37326039 37326203 -104945241 - MER5A DNA MER1_type 0 189 24 2905 13 0 0 chr9 37326307 37326623 -104944821 + AluYb8 SINE Alu 1 316 -2 201 220 0 51 chr9 37328363 37328422 -104943022 + (TTGGGG)n Simple_repeat Simple_repeat 5 60 0 335 22 152 0 chr9 37329132 37329178 -104942266 + MADE1 DNA Mariner 1 53 -27 1807 277 80 4 chr9 37331658 37332336 -104939108 + L2 LINE L2 1519 2247 -1067 916 216 117 87 chr9 37332384 37332796 -104938648 - L2 LINE L2 -616 2698 2275 231 342 140 18 chr9 37332794 37332908 -104938536 + L2 LINE L2 3138 3265 -7 * 292 303 28 9 chr9 37333346 37333455 -104937989 - L2 LINE L2 -1000 2314 2204 289 214 34 22 chr9 37333457 37333546 -104937898 - MIR SINE MIR -96 166 77 189 298 89 16 chr9 37340702 37340826 -104930618 - MIR SINE MIR -70 192 60 634 189 0 14 chr9 37343806 37343954 -104927490 + CT-rich Low_complexity Low_complexity 3 148 0 801 258 99 44 chr9 37344458 37344892 -104926552 - L2 LINE L2 -1239 2075 1618 2403 76 3 13 chr9 37345192 37345495 -104925949 + AluSp SINE Alu 1 300 -13 461 265 11 3 chr9 37346093 37346223 -104925221 - MER5A DNA MER1_type -48 141 1 588 207 0 0 chr9 37347690 37347801 -104923643 - L1M3 LINE L1 -429 5751 5641 3147 221 33 40 chr9 37347861 37347918 -104923526 - L1ME1 LINE L1 -5 6161 6105 2189 115 3 0 chr9 37347918 37348214 -104923230 + AluSq SINE Alu 1 297 -16 3147 221 33 40 chr9 37348214 37348728 -104922716 - L1ME1 LINE L1 -61 6105 5595 1686 181 10 67 chr9 37348728 37349114 -104922330 + MLT1A1 LTR MaLR 1 364 -1 3147 221 33 40 chr9 37349114 37349399 -104922045 - L1ME1 LINE L1 -571 5595 5310 805 210 176 0 chr9 37349731 37349969 -104921475 - L1ME1 LINE L1 -1286 4860 4581 436 154 0 13 chr9 37349971 37350049 -104921395 - MLT1E LTR MaLR 0 593 517 25 0 0 0 chr9 37350059 37350084 -104921360 + AT_rich Low_complexity Low_complexity 1 25 0 272 159 0 0 chr9 37350084 37350128 -104921316 - FLAM SINE Alu -3 130 87 6060 185 18 35 chr9 37350228 37351847 -104919597 - L1M4c LINE L1 -2660 4905 3313 45271 36 2 1 chr9 37351865 37358011 -104913433 - L1PA3 LINE L1 0 6155 2 1841 236 33 43 chr9 37358115 37358219 -104913225 - L1M4c LINE L1 -4411 3154 3050 2459 131 64 29 chr9 37358219 37358638 -104912806 + Tigger2a DNA MER2_type 1 434 0 1841 236 33 43 chr9 37358638 37359061 -104912383 - L1M4c LINE L1 -4515 3050 2631 472 215 131 0 chr9 37359061 37359168 -104912276 - FLAM_A SINE Alu -12 121 1 1841 236 33 43 chr9 37359168 37359248 -104912196 - L1M4c LINE L1 -4934 2631 2552 16867 198 18 31 chr9 37359263 37359803 -104911641 - L1P3 LINE L1 -2039 4422 3877 2830 20 0 0 chr9 37359803 37360107 -104911337 + AluYa5 SINE Alu 1 304 -7 16867 198 18 31 chr9 37360107 37364003 -104907441 - L1P3 LINE L1 -2584 3877 8 2037 221 64 80 chr9 37364008 37364325 -104907119 - L1M3c LINE L1 -4717 2320 1999 195 42 0 0 chr9 37364325 37364349 -104907095 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2037 221 64 80 chr9 37364349 37364955 -104906489 - L1M3c LINE L1 -5038 1999 718 793 244 97 52 chr9 37364975 37365377 -104906067 - L1M4c LINE L1 -5427 2140 1721 230 196 20 39 chr9 37365824 37365875 -104905569 - L1M4c LINE L1 -6078 1418 1369 2214 277 32 17 chr9 37365875 37366583 -104904861 - L1MEc LINE L1 -5642 754 36 372 70 0 53 chr9 37366656 37366713 -104904731 + MADE1 DNA Mariner 27 80 0 189 0 0 0 chr9 37366940 37366961 -104904483 + (TG)n Simple_repeat Simple_repeat 1 21 0 237 304 38 0 chr9 37367035 37367114 -104904330 + L1ME LINE L1 142 223 -5982 239 261 59 25 chr9 37367584 37367703 -104903741 + L1ME LINE L1 628 750 -5646 1337 213 80 1 chr9 37367708 37368097 -104903347 + L1MC4 LINE L1 6761 7216 -592 792 205 119 5 chr9 37368159 37368344 -104903100 - MLT1A1 LTR MaLR 0 365 160 16729 150 60 26 chr9 37368359 37369898 -104901546 + L1M1 LINE L1 400 1886 -5679 333 0 0 0 chr9 37369898 37369935 -104901509 + (GA)n Simple_repeat Simple_repeat 2 38 0 16729 150 60 26 chr9 37369935 37371377 -104900067 + L1M1 LINE L1 1886 3278 -4287 2003 80 0 16 chr9 37371377 37371626 -104899818 + AluSc SINE Alu 1 245 -64 16729 150 60 26 chr9 37371626 37371763 -104899681 + L1M1 LINE L1 3278 3354 -4211 2068 135 3 22 chr9 37371763 37372081 -104899363 + AluSx SINE Alu 1 312 0 16729 150 60 26 chr9 37372081 37372147 -104899297 + L1M1 LINE L1 3354 3416 -4149 1049 231 63 65 chr9 37372148 37372566 -104898878 - MLT1E LTR MaLR -101 492 36 5789 83 29 2 chr9 37375231 37376029 -104895415 - L1PA11 LINE L1 -1 6173 5355 2489 134 15 106 chr9 37376518 37377057 -104894387 - L1MC1 LINE L1 0 6333 5844 877 175 28 0 chr9 37377057 37377200 -104894244 - AluJb SINE Alu -21 291 145 235 79 0 26 chr9 37377200 37377238 -104894206 + L1P4 LINE L1 5713 5749 -419 3466 191 57 15 chr9 37377241 37378673 -104892771 - L1MC1 LINE L1 -491 5853 4360 11580 23 7 1 chr9 37378689 37380795 -104890649 - L1PA2 LINE L1 -3 6152 4032 756 62 0 0 chr9 37380795 37380892 -104890552 + L1PA2 LINE L1 3911 4007 -2139 25 0 0 0 chr9 37381271 37381296 -104890148 + AT_rich Low_complexity Low_complexity 1 25 0 2434 112 36 29 chr9 37381296 37381681 -104889763 - L1MA1 LINE L1 -4 6298 5911 529 262 56 60 chr9 37381850 37382083 -104889361 - MER112 DNA MER1_type -8 252 21 405 0 0 0 chr9 37382384 37382429 -104889015 + (CA)n Simple_repeat Simple_repeat 1 45 0 336 24 0 0 chr9 37382428 37382469 -104888975 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 2501 118 16 3 chr9 37382590 37382962 -104888482 + L1MC2 LINE L1 5605 5981 -352 * 4430 135 74 33 chr9 37382955 37383143 -104888301 + L1MB4 LINE L1 5288 5467 -713 195 42 0 0 chr9 37383143 37383167 -104888277 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 4430 135 74 33 chr9 37383167 37383478 -104887966 + L1MB4 LINE L1 5467 5764 -416 2331 104 3 0 chr9 37383478 37383785 -104887659 + AluSx SINE Alu 1 308 -4 4430 135 74 33 chr9 37383785 37384136 -104887308 + L1MB4 LINE L1 5764 6174 -6 341 145 0 16 chr9 37384148 37384210 -104887234 + L1MC2 LINE L1 5968 6028 -316 1415 99 26 0 chr9 37384210 37384401 -104887043 - L1PA7 LINE L1 -1 6153 5958 2051 130 9 22 chr9 37384401 37384722 -104886722 + L1MC2 LINE L1 6015 6333 -11 42240 63 6 4 chr9 37384732 37390863 -104880581 + L1PA5 LINE L1 11 6154 0 3777 265 94 43 chr9 37392527 37393208 -104878236 + L2 LINE L2 1486 2131 -1182 766 87 0 16 chr9 37393208 37393335 -104878109 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 3777 265 94 43 chr9 37393335 37394392 -104877052 + L2 LINE L2 2131 3312 -1 838 308 70 39 chr9 37394509 37394866 -104876578 + L2 LINE L2 2898 3265 -7 197 204 41 20 chr9 37395119 37395168 -104876276 - L3 LINE CR1 -951 626 577 2359 118 0 0 chr9 37399789 37400102 -104871342 + AluSq SINE Alu 1 313 0 294 286 168 31 chr9 37401109 37401303 -104870141 - MIR SINE MIR -18 244 22 2229 107 3 3 chr9 37403344 37403644 -104867800 + AluSx SINE Alu 1 300 -12 788 147 128 39 chr9 37403857 37404064 -104867380 + L1MB4 LINE L1 5980 6179 -1 5701 93 1 0 chr9 37404149 37404881 -104866563 - L1PB1 LINE L1 0 6151 5419 501 281 15 15 chr9 37406291 37406426 -104865018 + MER5A DNA MER1_type 7 141 -48 1475 222 35 86 chr9 37406695 37406787 -104864657 + L1M4 LINE L1 3258 3353 -2793 2030 141 0 0 chr9 37406787 37407071 -104864373 + AluJb SINE Alu 1 284 -28 1475 222 35 86 chr9 37407071 37407130 -104864314 + L1M4 LINE L1 3353 3413 -2733 1147 149 198 71 chr9 37407130 37407453 -104863991 + MLT1A1 LTR MaLR 1 364 -1 1475 222 35 86 chr9 37407453 37407846 -104863598 + L1M4 LINE L1 3413 3775 -2371 739 197 90 34 chr9 37407844 37408078 -104863366 + L1MC5 LINE L1 7347 7593 -368 * 621 121 0 0 chr9 37408105 37408188 -104863256 + AluS SINE Alu 2 84 -228 650 243 56 25 chr9 37408190 37408474 -104862970 + L1MC5 LINE L1 7585 7877 -84 1934 163 0 16 chr9 37408839 37409145 -104862299 + AluJb SINE Alu 3 303 -9 342 239 129 18 chr9 37409448 37409618 -104861826 - MIR SINE MIR -6 256 67 1564 168 8 0 chr9 37409796 37410046 -104861398 + AluJo SINE Alu 41 292 -20 4731 194 3 42 chr9 37410231 37411372 -104860072 - L1 LINE L1 -1576 4570 3371 186 329 62 41 chr9 37412049 37412195 -104859249 - L2 LINE L2 -189 3083 2935 1828 191 12 9 chr9 37412601 37412946 -104858498 - MER4D LTR ERV1 0 903 558 879 103 0 0 chr9 37413018 37413134 -104858310 + AluSg/x SINE Alu 187 302 -10 879 167 86 62 chr9 37413134 37413369 -104858075 + LTR48 LTR ERV1 61 345 -354 357 191 0 16 chr9 37413367 37413430 -104858014 - AluJo SINE Alu -14 288 227 * 858 173 6 26 chr9 37413430 37413586 -104857858 - AluJo SINE Alu -148 164 12 463 216 81 0 chr9 37413596 37413707 -104857737 + LTR48 LTR ERV1 337 456 -331 909 228 39 27 chr9 37413725 37413984 -104857460 + LTR48B LTR ERV1 381 642 -2 2318 94 0 28 chr9 37414293 37414611 -104856833 - AluSg SINE Alu -1 309 1 744 256 97 43 chr9 37414777 37415148 -104856296 - L2 LINE L2 0 3313 2923 233 197 15 30 chr9 37415266 37415308 -104856136 + (CTTAT)n Simple_repeat Simple_repeat 4 45 -23 2271 101 7 7 chr9 37415308 37415616 -104855828 - AluSg SINE Alu -2 308 1 543 246 149 0 chr9 37415619 37415733 -104855711 - FLAM_A SINE Alu -2 131 1 233 197 15 30 chr9 37415733 37415752 -104855692 + (CTTAT)n Simple_repeat Simple_repeat 47 68 0 2443 50 0 20 chr9 37416095 37416397 -104855047 - AluY SINE Alu -15 296 1 212 261 0 0 chr9 37416739 37416785 -104854659 + CT-rich Low_complexity Low_complexity 5 50 0 203 267 0 0 chr9 37417232 37417277 -104854167 + CT-rich Low_complexity Low_complexity 5 49 0 877 120 72 30 chr9 37417383 37417550 -104853894 + L1MA8 LINE L1 6112 6285 -6 1818 185 0 13 chr9 37417784 37418086 -104853358 - AluJo SINE Alu -14 298 1 2310 97 3 3 chr9 37418205 37418514 -104852930 - AluSg1 SINE Alu 0 309 1 366 308 58 55 chr9 37418718 37419010 -104852434 + L1MDa LINE L1 57 349 -6191 229 323 50 10 chr9 37419380 37419479 -104851965 + L1MDa LINE L1 794 896 -5634 1394 246 102 39 chr9 37419589 37420344 -104851100 + L1MDa LINE L1 920 1679 -4861 507 278 71 71 chr9 37420344 37420596 -104850848 + MER110-int LTR ERV1 2213 2464 -2183 574 246 157 26 chr9 37420658 37421093 -104850351 - HAL1 LINE L1 -1843 664 142 371 353 41 63 chr9 37421278 37421547 -104849897 - HAL1b LINE L1 -1059 289 27 1369 147 4 26 chr9 37421737 37421968 -104849476 - AluJb SINE Alu -1 311 86 1673 85 0 5 chr9 37421984 37422196 -104849248 - AluJb SINE Alu -2 310 100 1791 130 77 80 chr9 37422764 37423140 -104848304 + THE1C LTR MaLR 1 375 0 1713 188 102 5 chr9 37423326 37423699 -104847745 + Tigger6a DNA MER2_type 405 813 -270 192 40 0 0 chr9 37424054 37424079 -104847365 + (TCTCC)n Simple_repeat Simple_repeat 5 29 0 1335 144 55 19 chr9 37425578 37425849 -104845595 + Tigger6a DNA MER2_type 803 1083 0 452 158 0 0 chr9 37426012 37426088 -104845356 - L1MC2 LINE L1 -8 6336 6261 2207 119 44 0 chr9 37426133 37426476 -104844968 - L1MA4 LINE L1 -7 6293 5936 5245 109 23 9 chr9 37426482 37427270 -104844174 - L1MA3 LINE L1 -106 6199 5401 4960 150 25 0 chr9 37427269 37428136 -104843308 - L1MA3 LINE L1 -1293 4853 3965 * 764 156 4 110 chr9 37428156 37428414 -104843030 - MER31-int LTR ERV1 -3250 1686 1270 8466 210 53 16 chr9 37430016 37434836 -104836608 - L1 LINE L1 -2191 4597 5 232 196 0 0 chr9 37434836 37434887 -104836557 - L2 LINE L2 -566 2748 2698 1899 74 47 37 chr9 37434895 37434970 -104836474 + L1MA2 LINE L1 6004 6077 -227 1733 104 0 0 chr9 37434970 37435191 -104836253 + AluSq SINE Alu 83 303 -10 1899 74 47 37 chr9 37435191 37435413 -104836031 + L1MA2 LINE L1 6077 6304 0 464 196 101 51 chr9 37436342 37436480 -104834964 + L2 LINE L2 3168 3312 -1 2304 128 35 99 chr9 37437833 37438039 -104833405 + MSTA LTR MaLR 2 165 -263 2523 66 3 0 chr9 37438049 37438351 -104833093 + AluY SINE Alu 1 303 -8 1281 103 20 5 chr9 37438351 37438535 -104832909 + L1PB2 LINE L1 5962 6151 0 2304 128 35 99 chr9 37438535 37438782 -104832662 + MSTA LTR MaLR 165 426 -2 244 194 56 56 chr9 37439452 37439524 -104831920 + L2 LINE L2 3196 3267 -5 40 83 0 0 chr9 37439645 37439741 -104831703 + AT_rich Low_complexity Low_complexity 1 96 0 22 35 0 0 chr9 37439749 37439778 -104831666 + AT_rich Low_complexity Low_complexity 1 29 0 439 239 14 78 chr9 37439897 37439941 -104831503 + L2 LINE L2 3181 3226 -87 739 149 15 22 chr9 37439941 37440075 -104831369 - FLAM_A SINE Alu 0 133 1 439 239 14 78 chr9 37440075 37440172 -104831272 + L2 LINE L2 3226 3313 0 237 253 0 76 chr9 37440266 37440345 -104831099 - MIR SINE MIR 0 262 190 1699 84 0 5 chr9 37440396 37440610 -104830834 + AluY SINE Alu 1 213 -98 1393 114 144 0 chr9 37440716 37440917 -104830527 - AluSx SINE Alu -39 273 44 410 188 47 47 chr9 37441789 37441874 -104829570 + MER58B DNA MER1_type 256 340 -1 251 163 0 0 chr9 37441856 37441899 -104829545 + MER58B DNA MER1_type 299 341 0 * 889 245 108 89 chr9 37441900 37442221 -104829223 - L2 LINE L2 -1134 2180 1842 2235 112 0 26 chr9 37442221 37442533 -104828911 + AluSx SINE Alu 3 306 -6 889 245 108 89 chr9 37442533 37442775 -104828669 - L2 LINE L2 -1472 1842 1606 5740 24 2 5 chr9 37443046 37443675 -104827769 + SVA Other Other 757 1383 -3 497 241 0 9 chr9 37444529 37444637 -104826807 + MIR SINE MIR 38 144 -118 2409 62 7 26 chr9 37444659 37444965 -104826479 + AluY SINE Alu 2 301 -10 32 0 0 0 chr9 37444977 37445009 -104826435 + AT_rich Low_complexity Low_complexity 1 32 0 2043 123 10 3 chr9 37445009 37445310 -104826134 + AluSp SINE Alu 1 303 -10 1251 281 118 5 chr9 37445333 37445750 -104825694 - LTR16B LTR ERVL 0 464 1 3926 89 67 13 chr9 37445934 37446484 -104824960 + LTR19B LTR ERV1 1 580 0 635 205 16 8 chr9 37446484 37446611 -104824833 + FLAM_C SINE Alu 5 132 -11 2248 314 40 36 chr9 37446635 37447552 -104823892 - ERVL LTR ERVL -483 5281 4369 2093 127 40 54 chr9 37447552 37447922 -104823522 - MLT1A1 LTR MaLR 0 365 1 2248 314 40 36 chr9 37447922 37448689 -104822755 - ERVL LTR ERVL -1395 4369 3606 2567 72 3 3 chr9 37448689 37449023 -104822421 + L1PA6 LINE L1 5821 6154 0 2248 314 40 36 chr9 37449023 37449185 -104822259 - ERVL LTR ERVL -2158 3606 2393 192 40 0 0 chr9 37449196 37449221 -104822223 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1603 269 35 40 chr9 37449245 37449725 -104821719 - ERVL LTR ERVL -2723 2273 1796 2584 279 65 43 chr9 37449811 37450737 -104820707 - ERVL LTR ERVL -3579 1417 472 1131 183 0 0 chr9 37450740 37450915 -104820529 + FAM SINE Alu 1 175 0 392 282 29 62 chr9 37451294 37451503 -104819941 - LTR16B LTR ERVL 0 464 263 1542 229 81 21 chr9 37451503 37451875 -104819569 + MSTD LTR MaLR 1 394 -2 1148 244 34 8 chr9 37451875 37452137 -104819307 - LTR16B LTR ERVL -195 269 1 265 280 21 54 chr9 37452139 37452232 -104819212 + MIR SINE MIR 161 250 -12 479 268 48 74 chr9 37452967 37453198 -104818246 + MLT1K LTR MaLR 3 227 -361 7815 113 21 18 chr9 37453238 37453837 -104817607 + Tigger3b DNA MER2_type 1 597 -2431 2624 49 0 7 chr9 37453837 37454145 -104817299 + AluY SINE Alu 1 306 -5 7815 113 21 18 chr9 37454145 37454772 -104816672 + Tigger3b DNA MER2_type 597 1231 0 316 115 262 0 chr9 37454772 37454833 -104816611 + Tigger4(Zombi) DNA MER2_type 2655 2731 0 2612 210 80 79 chr9 37454834 37455278 -104816166 + L1M4 LINE L1 2260 2702 -3444 6075 60 1 1 chr9 37455278 37456038 -104815406 + L1PA8 LINE L1 5412 6171 -1 2612 210 80 79 chr9 37456038 37456127 -104815317 + L1M4 LINE L1 2702 2789 -3357 1905 94 4 16 chr9 37456127 37456383 -104815061 + AluSx SINE Alu 51 303 -9 2612 210 80 79 chr9 37456383 37456602 -104814842 + L1M4 LINE L1 2789 3006 -3140 743 121 9 0 chr9 37456602 37456718 -104814726 + L1MB7 LINE L1 6049 6165 -19 2612 210 80 79 chr9 37456718 37457071 -104814373 + L1M4 LINE L1 3006 3368 -2778 1608 196 38 25 chr9 37457075 37457259 -104814185 - MLT1E LTR MaLR 0 593 402 2639 158 33 56 chr9 37457259 37457773 -104813671 + MLT1D LTR MaLR 4 505 0 1608 196 38 25 chr9 37457773 37457904 -104813540 - MLT1E LTR MaLR -191 402 274 4031 206 74 54 chr9 37457904 37458739 -104812705 + L1M4 LINE L1 3988 4857 -1289 579 152 0 0 chr9 37458739 37458838 -104812606 - L1MA10 LINE L1 -2 6332 6234 4031 206 74 54 chr9 37458838 37459227 -104812217 + L1M4 LINE L1 4857 5237 -909 1121 154 99 41 chr9 37459227 37459448 -104811996 - AluJo SINE Alu -78 234 1 1424 173 69 49 chr9 37459673 37459979 -104811465 + AluJb SINE Alu 1 312 0 775 150 8 0 chr9 37460043 37460170 -104811274 + FLAM_C SINE Alu 5 132 -1 365 136 0 0 chr9 37460825 37460884 -104810560 + Alu SINE Alu 242 300 -2 704 160 0 0 chr9 37461078 37461184 -104810260 - FLAM_C SINE Alu -36 107 2 2232 97 7 3 chr9 37461407 37461696 -104809748 + AluSx SINE Alu 1 290 -22 224 301 88 35 chr9 37462141 37462254 -104809190 + L2 LINE L2 3114 3232 -40 2071 103 29 0 chr9 37462291 37462563 -104808881 - AluSx SINE Alu -32 280 1 331 340 7 20 chr9 37462928 37463078 -104808366 + MIR SINE MIR 19 166 -96 212 219 0 0 chr9 37464707 37464748 -104806696 - L2 LINE L2 -17 3255 3215 249 327 9 35 chr9 37465566 37465679 -104805765 + L2 LINE L2 2926 3035 -237 184 288 17 0 chr9 37465753 37465812 -104805632 - L2 LINE L2 0 3272 3213 623 88 0 0 chr9 37467541 37467621 -104803823 + FLAM_A SINE Alu 30 109 -33 592 220 95 18 chr9 37469554 37469722 -104801722 + AluJo SINE Alu 1 181 -131 467 130 169 0 chr9 37469757 37469834 -104801610 + FLAM_A SINE Alu 21 110 -32 1194 170 3 156 chr9 37469943 37470290 -104801154 - AluJo SINE Alu -7 295 2 746 261 63 34 chr9 37470503 37470741 -104800703 - MER112 DNA MER1_type -8 252 8 223 278 48 103 chr9 37472086 37472472 -104798972 - L2 LINE L2 -114 3158 2726 2498 81 0 0 chr9 37472610 37472918 -104798526 + AluY SINE Alu 2 309 -2 570 221 18 0 chr9 37474222 37474366 -104797078 + FLAM_A SINE Alu 2 147 0 370 259 65 53 chr9 37475184 37475354 -104796090 + MER20B DNA MER1_type 5 176 -607 2536 67 0 0 chr9 37475883 37476182 -104795262 + AluSc SINE Alu 1 299 -10 587 158 97 2 chr9 37476224 37476348 -104795096 - MER20 DNA MER1_type -2 217 81 1014 173 18 0 chr9 37477249 37477417 -104794027 - FRAM SINE Alu -5 171 1 307 322 90 9 chr9 37477420 37477631 -104793813 + L2 LINE L2 1767 1994 -1320 832 284 202 19 chr9 37477727 37478410 -104793034 + L2 LINE L2 1973 2780 -534 390 296 43 12 chr9 37479172 37479334 -104792110 + MIR3 SINE MIR 36 202 -6 22 0 0 0 chr9 37484986 37485008 -104786436 + AT_rich Low_complexity Low_complexity 1 22 0 670 233 218 5 chr9 37486461 37486667 -104784777 - MIR SINE MIR -10 252 3 191 283 100 0 chr9 37486900 37486960 -104784484 - L2 LINE L2 -2855 459 394 219 331 56 28 chr9 37487253 37487395 -104784049 + MIR SINE MIR 104 249 -13 506 280 212 40 chr9 37487665 37487807 -104783637 + L3 LINE CR1 816 932 -645 2306 118 0 13 chr9 37487807 37488122 -104783322 + AluSx SINE Alu 1 311 -1 506 280 212 40 chr9 37488122 37488451 -104782993 + L3 LINE CR1 932 1368 -209 1442 95 5 38 chr9 37489322 37489532 -104781912 - AluSg/x SINE Alu 0 312 110 343 246 104 45 chr9 37490451 37490585 -104780859 - MIR SINE MIR -5 257 116 515 335 0 0 chr9 37491034 37491210 -104780234 + C-rich Low_complexity Low_complexity 3 178 0 1349 133 4 0 chr9 37491360 37504824 -104766620 + ALR/Alpha Satellite centromeric 1 13516 -1 625 220 95 18 chr9 37505923 37506091 -104765353 + AluJo SINE Alu 1 181 -131 484 130 169 0 chr9 37506126 37506203 -104765241 + FLAM_A SINE Alu 21 110 -32 1251 176 3 150 chr9 37506312 37506659 -104764785 - AluJo SINE Alu -5 297 2 690 261 63 34 chr9 37506872 37507110 -104764334 - MER112 DNA MER1_type -8 252 8 380 264 161 35 chr9 37507705 37507879 -104763565 - L1ME4a LINE L1 -195 5926 5731 303 284 47 100 chr9 37508455 37508841 -104762603 - L2 LINE L2 -114 3158 2726 261 327 115 59 chr9 37508839 37508979 -104762465 + L2 LINE L2 2301 2432 -882 * 2518 81 0 0 chr9 37508979 37509287 -104762157 + AluY SINE Alu 2 309 -2 261 327 115 59 chr9 37509287 37509485 -104761959 + L2 LINE L2 2432 2658 -656 599 221 18 0 chr9 37510591 37510735 -104760709 + FLAM_A SINE Alu 2 147 0 329 259 65 53 chr9 37511553 37511723 -104759721 + MER20B DNA MER1_type 5 176 -607 2548 67 0 0 chr9 37512252 37512551 -104758893 + AluSc SINE Alu 1 299 -10 553 158 97 2 chr9 37512593 37512717 -104758727 - MER20 DNA MER1_type -2 217 81 1037 173 18 0 chr9 37513618 37513786 -104757658 - FRAM SINE Alu -5 171 1 371 327 89 9 chr9 37513789 37514003 -104757441 + L2 LINE L2 1767 1997 -1317 1092 284 202 19 chr9 37514096 37514779 -104756665 + L2 LINE L2 1973 2780 -534 461 296 43 12 chr9 37515541 37515703 -104755741 + MIR3 SINE MIR 36 202 -6 22 0 0 0 chr9 37521355 37521377 -104750067 + AT_rich Low_complexity Low_complexity 1 22 0 670 233 218 5 chr9 37522830 37523036 -104748408 - MIR SINE MIR -10 252 3 191 283 100 0 chr9 37523269 37523329 -104748115 - L2 LINE L2 -2855 459 394 219 331 56 28 chr9 37523622 37523764 -104747680 + MIR SINE MIR 104 249 -13 280 242 197 15 chr9 37524034 37524166 -104747278 + L3 LINE CR1 816 971 -606 2251 101 31 0 chr9 37524176 37524464 -104746980 + AluSq SINE Alu 1 297 -16 413 273 55 0 chr9 37524536 37524646 -104746798 - MIR SINE MIR -136 126 11 2169 55 70 4 chr9 37524827 37525100 -104746344 + AluY SINE Alu 3 293 -18 1633 189 19 92 chr9 37525148 37525317 -104746127 - L1ME LINE L1 -406 5760 5580 2497 82 0 0 chr9 37525317 37525620 -104745824 - AluY SINE Alu -8 303 1 1633 189 19 92 chr9 37525620 37525779 -104745665 - L1ME LINE L1 -586 5580 5411 2213 134 0 0 chr9 37525779 37526086 -104745358 - AluSx SINE Alu -5 307 1 2124 121 0 0 chr9 37526096 37526376 -104745068 - AluSx SINE Alu -16 296 17 1633 189 19 92 chr9 37526376 37526516 -104744928 - L1ME LINE L1 -764 5402 5317 2022 144 0 13 chr9 37526516 37526821 -104744623 - AluJb SINE Alu -11 301 1 1633 189 19 92 chr9 37526821 37526852 -104744592 - L1ME LINE L1 -849 5317 5285 201 348 0 33 chr9 37526959 37527140 -104744304 + C-rich Low_complexity Low_complexity 5 179 0 2510 70 7 0 chr9 37530492 37530794 -104740650 + AluSg SINE Alu 3 306 -4 1639 119 107 0 chr9 37530810 37531101 -104740343 + AluSx SINE Alu 14 330 0 4190 164 62 34 chr9 37531202 37531296 -104740148 + L1MB7 LINE L1 5081 5171 -1013 2620 63 0 0 chr9 37531296 37531598 -104739846 + AluSc SINE Alu 1 302 -7 4190 164 62 34 chr9 37531598 37531751 -104739693 + L1MB7 LINE L1 5171 5318 -866 1936 167 3 3 chr9 37531751 37532056 -104739388 + AluJo SINE Alu 1 305 -7 4190 164 62 34 chr9 37532056 37532884 -104738560 + L1MB7 LINE L1 5318 6165 -19 1658 176 42 11 chr9 37532894 37533247 -104738197 + L1MB8 LINE L1 5815 6178 0 822 174 0 7 chr9 37533254 37533398 -104738046 + FLAM_C SINE Alu 1 143 0 864 162 217 63 chr9 37533458 37533711 -104737733 - AluJb SINE Alu -9 293 2 2406 106 0 0 chr9 37534117 37534420 -104737024 - AluSx SINE Alu -9 303 1 1472 188 79 0 chr9 37534495 37534761 -104736683 + AluJo SINE Alu 1 287 -25 864 121 0 45 chr9 37535637 37535769 -104735675 - FLAM_C SINE Alu -17 126 1 324 274 14 0 chr9 37536512 37536585 -104734859 + MIR SINE MIR 30 103 -105 336 247 54 21 chr9 37536804 37536897 -104734547 + MIR SINE MIR 30 125 -83 190 196 174 0 chr9 37541419 37541465 -104729979 + L2 LINE L2 3000 3053 -219 1967 99 37 0 chr9 37542656 37542929 -104728515 + AluSx SINE Alu 1 283 -29 211 227 114 68 chr9 37542932 37543020 -104728424 - MER5A DNA MER1_type -66 123 32 269 184 350 29 chr9 37543725 37543828 -104727616 + MIR SINE MIR 16 151 -111 2251 114 0 0 chr9 37543952 37544251 -104727193 + AluSx SINE Alu 1 299 -13 1769 176 3 3 chr9 37544252 37544547 -104726897 + AluSx SINE Alu 2 296 -16 618 224 178 57 chr9 37544547 37545026 -104726418 + L2 LINE L2 2740 3277 -36 264 319 30 30 chr9 37545076 37545242 -104726202 + L2 LINE L2 2554 2719 -595 973 114 23 0 chr9 37545247 37545378 -104726066 - AluJb SINE Alu -178 134 1 345 103 35 0 chr9 37545432 37545490 -104725954 + Alu SINE Alu 1 60 -239 208 283 0 0 chr9 37546719 37546765 -104724679 + polypurine Low_complexity Low_complexity 1 46 0 583 224 72 0 chr9 37548415 37548540 -104722904 - MIR3 SINE MIR 0 208 75 322 177 13 127 chr9 37550942 37551021 -104720423 + MER91C DNA MER1_type 36 105 -35 208 274 140 89 chr9 37551388 37551545 -104719899 + MIR3 SINE MIR 21 185 -23 2371 102 3 0 chr9 37554229 37554532 -104716912 - AluSx SINE Alu -7 305 2 2235 90 28 3 chr9 37555758 37556046 -104715398 - AluSq SINE Alu -18 295 1 881 204 64 30 chr9 37558477 37558712 -104712732 + L1M4 LINE L1 793 1035 -5507 2872 78 92 5 chr9 37558712 37559124 -104712320 + LTR7 LTR ERV1 1 448 -2 11948 92 12 42 chr9 37559126 37561630 -104709814 + HERVH LTR ERV1 1 2318 -5395 7743 101 1 15 chr9 37561905 37563083 -104708361 + HERVH LTR ERV1 1835 2995 -4718 5841 93 3 2 chr9 37563062 37563915 -104707529 + HERVH LTR ERV1 3140 3993 -3720 * 4084 144 9 3 chr9 37563917 37564575 -104706869 + HERVH LTR ERV1 4488 5149 -2564 1340 118 38 0 chr9 37564576 37564788 -104706656 + HERVH LTR ERV1 5600 5819 -1894 * 2149 98 79 14 chr9 37564786 37565154 -104706290 + HERVH LTR ERV1 7322 7713 0 2239 83 246 6 chr9 37565154 37565515 -104705929 + LTR7 LTR ERV1 1 448 -2 468 208 58 52 chr9 37565517 37565671 -104705773 + L1M4 LINE L1 1031 1185 -5357 747 192 8 0 chr9 37565684 37565804 -104705640 - FLAM_C SINE Alu -22 121 1 1848 210 72 44 chr9 37565804 37565872 -104705572 + L1M4 LINE L1 1178 1243 -5403 1497 206 17 7 chr9 37565872 37566164 -104705280 + AluJo SINE Alu 9 303 -9 1848 210 72 44 chr9 37566164 37566831 -104704613 + L1M4 LINE L1 1243 1917 -4729 2463 223 33 0 chr9 37567447 37568052 -104703392 + L1 LINE L1 3549 4173 -1973 630 175 0 0 chr9 37568052 37568149 -104703295 + AluJ/FLAM SINE Alu 1 97 -215 1510 200 35 0 chr9 37568157 37568472 -104702972 + MST-int LTR MaLR 124 449 -1202 4881 68 15 48 chr9 37568473 37568799 -104702645 - MER4A LTR ERV1 0 664 371 2002 127 9 64 chr9 37568799 37569129 -104702315 + AluSx SINE Alu 1 312 0 4881 68 15 48 chr9 37569129 37569489 -104701955 - MER4A LTR ERV1 -293 371 1 13650 148 95 45 chr9 37569493 37570156 -104701288 - MER4A-int LTR ERV1 0 6598 5970 2016 150 3 0 chr9 37570156 37570450 -104700994 + AluSx SINE Alu 1 295 -17 13650 148 95 45 chr9 37570450 37570618 -104700826 - MER4A-int LTR ERV1 -628 5970 5812 1954 161 0 23 chr9 37570618 37570922 -104700522 - AluSx SINE Alu -15 297 1 13650 148 95 45 chr9 37570922 37571572 -104699872 - MER4A-int LTR ERV1 -786 5812 5196 2183 161 0 0 chr9 37571572 37571883 -104699561 + AluSx SINE Alu 1 311 -1 13650 148 95 45 chr9 37571883 37572018 -104699426 - MER4A-int LTR ERV1 -1402 5196 5069 2448 88 0 0 chr9 37572018 37572314 -104699130 + AluSg SINE Alu 1 296 -14 13650 148 95 45 chr9 37572314 37572685 -104698759 - MER4A-int LTR ERV1 -1529 5069 4718 2351 106 0 0 chr9 37572685 37572977 -104698467 + AluSx SINE Alu 1 292 -20 13650 148 95 45 chr9 37572977 37574631 -104696813 - MER4A-int LTR ERV1 -1880 4718 1723 1863 162 0 25 chr9 37574631 37574945 -104696499 + AluSx SINE Alu 7 312 0 5107 83 44 31 chr9 37574979 37575705 -104695739 - L1PA11 LINE L1 0 6174 5436 1992 157 3 0 chr9 37575705 37575999 -104695445 - AluSx SINE Alu -17 295 1 5107 83 44 31 chr9 37575999 37576075 -104695369 - L1PA11 LINE L1 -738 5436 5362 865 168 41 15 chr9 37576075 37576272 -104695172 - MER4A-int LTR ERV1 -5043 1715 1514 1445 146 56 19 chr9 37576281 37576360 -104695084 - MER4-int LTR ERV1 -4312 2286 2211 2477 66 0 13 chr9 37576360 37576661 -104694783 + AluY SINE Alu 1 297 -14 1445 146 56 19 chr9 37576661 37576904 -104694540 - MER4-int LTR ERV1 -4387 2211 1952 226 177 0 81 chr9 37576926 37576988 -104694456 - LTR26 LTR ERV1 -68 535 479 4398 99 0 2 chr9 37576990 37577628 -104693816 - MER4-int LTR ERV1 -3094 4619 3995 2442 137 0 3 chr9 37577638 37578019 -104693425 - MER4-int LTR ERV1 -3977 3736 3357 7433 191 85 85 chr9 37578019 37580849 -104690595 - MER4-int LTR ERV1 -4883 2830 1 1206 177 77 107 chr9 37580856 37581313 -104690131 - LTR7 LTR ERV1 -7 443 1 1860 177 37 66 chr9 37581313 37581809 -104689635 - MER4A-int LTR ERV1 -4593 2944 2435 360 0 0 0 chr9 37581809 37581849 -104689595 + (CA)n Simple_repeat Simple_repeat 2 41 0 1860 177 37 66 chr9 37581849 37581909 -104689535 - MER4A-int LTR ERV1 -5102 2435 1161 734 121 0 0 chr9 37581912 37582011 -104689433 + AluS SINE Alu 2 100 -213 2159 112 34 0 chr9 37582011 37582306 -104689138 + AluSx SINE Alu 1 305 -7 2111 125 19 72 chr9 37582306 37582390 -104689054 - MER83 LTR ERV1 -53 395 308 4138 80 18 11 chr9 37582390 37582940 -104688504 + MER41A LTR ERV1 1 554 0 2111 125 19 72 chr9 37582940 37583272 -104688172 - MER83 LTR ERV1 -140 308 1 2449 95 99 33 chr9 37583277 37583835 -104687609 - MER4A-int LTR ERV1 -5952 646 1 4619 93 16 31 chr9 37583838 37584512 -104686932 - MER4A LTR ERV1 0 664 1 5314 190 25 59 chr9 37584516 37585492 -104685952 + MSTB1-int LTR MaLR 451 1376 -275 1521 186 4 4 chr9 37585492 37585761 -104685683 - AluJo SINE Alu -41 271 3 5314 190 25 59 chr9 37585761 37586026 -104685418 + MSTB1-int LTR MaLR 1376 1649 -2 2038 137 109 0 chr9 37586118 37586484 -104684960 + MSTB1 LTR MaLR 27 432 0 1115 175 10 10 chr9 37586568 37586762 -104684682 - AluJo SINE Alu -118 194 1 2283 127 0 0 chr9 37586772 37587072 -104684372 - AluSg SINE Alu -10 300 1 308 338 91 32 chr9 37587614 37587833 -104683611 + L1MEd LINE L1 204 435 -5684 704 284 58 47 chr9 37587919 37588053 -104683391 + L1MEd LINE L1 457 588 -5531 2109 133 0 0 chr9 37588053 37588347 -104683097 + AluSx SINE Alu 1 294 -18 243 0 0 0 chr9 37588351 37588378 -104683066 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 704 284 58 47 chr9 37588378 37588618 -104682826 + L1MEd LINE L1 590 840 -5279 307 330 20 10 chr9 37588655 37588755 -104682689 - L2 LINE L2 -189 3083 2983 2267 93 23 10 chr9 37588756 37589056 -104682388 + AluY SINE Alu 1 304 -7 699 345 96 43 chr9 37589117 37589812 -104681632 - L2 LINE L2 -340 2974 2243 491 244 94 38 chr9 37589926 37590086 -104681358 + L1ME4a LINE L1 5654 5830 -291 2092 128 3 16 chr9 37590086 37590222 -104681222 + AluSx SINE Alu 1 137 -175 2231 128 0 0 chr9 37590222 37590526 -104680918 + AluSq SINE Alu 1 304 -9 2092 128 3 16 chr9 37590526 37590695 -104680749 + AluSx SINE Alu 137 302 -10 491 244 94 38 chr9 37590695 37590747 -104680697 + L1ME4a LINE L1 5830 5878 -243 979 87 0 0 chr9 37590781 37590896 -104680548 + AluSg1 SINE Alu 29 143 -166 2087 83 0 0 chr9 37590897 37591149 -104680295 + AluSg SINE Alu 2 253 -57 1213 110 0 0 chr9 37591160 37591351 -104680093 + AluSg1 SINE Alu 119 309 0 2032 109 42 7 chr9 37591395 37591680 -104679764 + AluSg SINE Alu 3 297 -13 184 287 11 85 chr9 37592910 37593004 -104678440 - L2 LINE L2 -147 3125 3039 448 111 0 0 chr9 37593145 37593208 -104678236 + MLT1A2 LTR MaLR 266 328 -46 189 107 0 0 chr9 37593209 37593237 -104678207 + (A)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr9 37593310 37593338 -104678106 + AT_rich Low_complexity Low_complexity 1 28 0 977 133 0 0 chr9 37593465 37593608 -104677836 + FLAM_C SINE Alu 1 143 0 1783 143 0 4 chr9 37593817 37594075 -104677369 + AluSq SINE Alu 1 257 -56 1846 166 7 7 chr9 37594169 37594465 -104676979 + AluJb SINE Alu 1 296 -16 982 210 20 15 chr9 37594793 37594988 -104676456 - AluJo SINE Alu -10 302 107 490 288 0 0 chr9 37594988 37595099 -104676345 - Charlie8 DNA MER1_type -2144 273 163 2353 75 0 0 chr9 37595183 37595491 -104675953 + AluY SINE Alu 2 309 0 977 330 90 44 chr9 37595565 37596591 -104674853 + L2 LINE L2 2200 3272 0 271 341 179 8 chr9 37596593 37596716 -104674728 - MIR3 SINE MIR -48 160 17 534 198 41 169 chr9 37596980 37597016 -104674428 - MIR SINE MIR -42 220 181 4770 39 15 5 chr9 37597016 37597601 -104673843 - LTR10C LTR ERV1 0 591 1 534 198 41 169 chr9 37597601 37597642 -104673802 - MIR SINE MIR -81 181 136 661 228 8 0 chr9 37597642 37597765 -104673679 + FLAM_A SINE Alu 1 124 -9 1982 142 3 20 chr9 37597768 37598071 -104673373 + AluJb SINE Alu 2 299 -13 534 198 41 169 chr9 37598071 37598231 -104673213 - MIR SINE MIR -128 134 9 234 239 0 0 chr9 37599099 37599145 -104672299 + GA-rich Low_complexity Low_complexity 2 47 0 1376 182 62 120 chr9 37602714 37602791 -104668653 - MLT1D LTR MaLR 0 505 425 1547 165 24 62 chr9 37602791 37603082 -104668362 + AluJb SINE Alu 3 282 -30 1376 182 62 120 chr9 37603082 37603317 -104668127 - MLT1D LTR MaLR -80 425 178 2386 61 0 10 chr9 37603317 37603611 -104667833 - AluY SINE Alu -8 303 13 2375 99 3 7 chr9 37603611 37603915 -104667529 - AluSp SINE Alu -10 303 1 1376 182 62 120 chr9 37603915 37604003 -104667441 - MLT1D LTR MaLR -326 179 139 1780 148 31 21 chr9 37604003 37604294 -104667150 + AluSx SINE Alu 1 294 -18 1376 182 62 120 chr9 37604294 37604422 -104667022 - MLT1D LTR MaLR -366 139 5 216 292 231 36 chr9 37604765 37604957 -104666487 + L2 LINE L2 2264 2417 -897 1994 120 33 0 chr9 37604957 37605258 -104666186 + AluSx SINE Alu 1 310 0 216 292 231 36 chr9 37605258 37605372 -104666072 + L2 LINE L2 2417 2631 -683 1487 186 44 24 chr9 37605454 37605749 -104665695 + 7SLRNA srpRNA srpRNA 1 301 -19 1839 156 0 17 chr9 37605905 37606193 -104665251 - AluJo SINE Alu -19 293 11 2394 76 0 10 chr9 37606250 37606551 -104664893 + AluY SINE Alu 1 298 -13 285 285 15 29 chr9 37606569 37606706 -104664738 + L1ME4a LINE L1 5894 6028 -93 1840 171 0 31 chr9 37606706 37607028 -104664416 - AluJb SINE Alu 0 312 1 2175 52 99 0 chr9 37608100 37608372 -104663072 - AluY SINE Alu -12 299 1 188 253 108 48 chr9 37608625 37608708 -104662736 - MIR3 SINE MIR -39 169 82 5955 109 25 20 chr9 37608712 37608782 -104662662 + L1PB1 LINE L1 4924 4992 -1159 1975 122 20 17 chr9 37608782 37609078 -104662366 + AluSx SINE Alu 1 297 -15 5955 109 25 20 chr9 37609078 37609865 -104661579 + L1PB1 LINE L1 4992 5788 -363 1841 114 0 0 chr9 37609865 37610110 -104661334 + AluSx SINE Alu 63 307 -5 5955 109 25 20 chr9 37610110 37610475 -104660969 + L1PB1 LINE L1 5788 6150 -1 5317 149 86 21 chr9 37610637 37611105 -104660339 + Ricksha_b DNA DNA 69 506 -2760 2243 98 7 0 chr9 37611105 37611401 -104660043 - AluSp SINE Alu -15 298 1 5317 149 86 21 chr9 37611401 37612093 -104659351 + Ricksha_b DNA DNA 506 1654 -12 31 68 0 0 chr9 37612222 37612281 -104659163 + AT_rich Low_complexity Low_complexity 1 59 0 669 243 68 9 chr9 37613892 37614114 -104657330 + L1ME1 LINE L1 5927 6161 -5 2287 98 0 16 chr9 37614676 37614981 -104656463 + AluY SINE Alu 12 311 0 1928 171 7 0 chr9 37616042 37616341 -104655103 + AluJo SINE Alu 8 308 -4 491 270 9 17 chr9 37617945 37618060 -104653384 - MER81 DNA DNA 0 114 1 247 211 0 0 chr9 37619918 37619970 -104651474 - Charlie1 DNA MER1_type 0 2761 2710 703 133 80 18 chr9 37620599 37620712 -104650732 + FLAM_C SINE Alu 3 122 -21 2285 116 0 0 chr9 37621067 37621361 -104650083 - AluSx SINE Alu -18 294 1 1983 85 0 0 chr9 37622092 37622339 -104649105 + AluSx SINE Alu 56 302 -10 797 155 0 0 chr9 37622342 37622458 -104648986 + AluJo/FLAM SINE Alu 1 116 -186 1448 138 165 8 chr9 37622458 37622719 -104648725 - AluYb8 SINE Alu -16 302 1 183 80 0 0 chr9 37622775 37622800 -104648644 + (A)n Simple_repeat Simple_repeat 1 25 0 899 264 50 0 chr9 37624894 37625114 -104646330 + MIR SINE MIR 5 235 -27 2442 92 3 0 chr9 37625638 37625944 -104645500 - AluSq SINE Alu -5 308 2 476 172 32 11 chr9 37626060 37626153 -104645291 - L2 LINE L2 0 3313 3219 2062 111 7 14 chr9 37626632 37626929 -104644515 - AluSx SINE Alu -17 295 1 234 363 35 9 chr9 37627205 37627318 -104644126 + L3b LINE CR1 1115 1230 -353 198 0 0 0 chr9 37627487 37627509 -104643935 + (T)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr9 37628175 37628198 -104643246 + GC_rich Low_complexity Low_complexity 1 23 0 211 256 0 0 chr9 37628740 37628779 -104642665 + (CGG)n Simple_repeat Simple_repeat 2 40 0 292 320 0 0 chr9 37630734 37630812 -104640632 - MIR SINE MIR -64 144 67 180 229 146 0 chr9 37633873 37633921 -104637523 - MIR SINE MIR -69 139 85 994 137 0 82 chr9 37633948 37634131 -104637313 - FRAM SINE Alu -16 160 1 1712 207 25 103 chr9 37636457 37636634 -104634810 + L1MB8 LINE L1 4897 5086 -1080 1677 84 14 0 chr9 37636634 37636849 -104634595 + AluSg/x SINE Alu 86 303 -9 1712 207 25 103 chr9 37636849 37636995 -104634449 + L1MB8 LINE L1 5086 5242 -924 2428 65 7 3 chr9 37636995 37637305 -104634139 + AluY SINE Alu 1 311 0 1712 207 25 103 chr9 37637305 37637327 -104634117 + L1MB8 LINE L1 5242 5264 -902 1566 159 10 54 chr9 37637327 37637622 -104633822 + AluJo SINE Alu 12 293 -19 1712 207 25 103 chr9 37637622 37637739 -104633705 + L1MB8 LINE L1 5264 5388 -778 2030 144 0 13 chr9 37637739 37638044 -104633400 + AluJb SINE Alu 1 301 -11 1712 207 25 103 chr9 37638044 37638184 -104633260 + L1MB8 LINE L1 5388 5537 -629 2127 121 0 0 chr9 37638184 37638464 -104632980 + AluSx SINE Alu 17 296 -16 2220 134 0 0 chr9 37638474 37638781 -104632663 + AluSx SINE Alu 1 307 -5 1712 207 25 103 chr9 37638781 37638940 -104632504 + L1MB8 LINE L1 5546 5580 -586 2505 82 0 0 chr9 37638940 37639243 -104632201 + AluY SINE Alu 1 303 -8 1712 207 25 103 chr9 37639243 37639412 -104632032 + L1MB8 LINE L1 5580 5760 -406 581 37 24 12 chr9 37639460 37639542 -104631902 - AluSg/x SINE Alu -19 291 209 216 0 0 0 chr9 37639565 37639589 -104631855 + (A)n Simple_repeat Simple_repeat 1 24 0 1944 114 23 4 chr9 37639605 37639901 -104631543 + AluSx SINE Alu 14 314 0 4194 165 62 34 chr9 37640002 37640096 -104631348 + L1MB7 LINE L1 5081 5171 -1013 2618 66 0 0 chr9 37640096 37640400 -104631044 + AluSc SINE Alu 1 304 -5 4194 165 62 34 chr9 37640400 37640553 -104630891 + L1MB7 LINE L1 5171 5318 -866 1943 167 3 3 chr9 37640553 37640858 -104630586 + AluJo SINE Alu 1 305 -7 4194 165 62 34 chr9 37640858 37641686 -104629758 + L1MB7 LINE L1 5318 6165 -19 1527 181 42 11 chr9 37641696 37642049 -104629395 + L1MB8 LINE L1 5815 6178 0 827 174 0 7 chr9 37642056 37642200 -104629244 + FLAM_C SINE Alu 1 143 0 927 153 213 59 chr9 37642260 37642514 -104628930 - AluJo SINE Alu -19 293 1 2420 105 0 0 chr9 37642919 37643223 -104628221 - AluSx SINE Alu -8 304 1 1476 188 79 0 chr9 37643298 37643564 -104627880 + AluJo SINE Alu 1 287 -25 868 121 0 45 chr9 37644440 37644572 -104626872 - FLAM_C SINE Alu -17 126 1 305 274 14 0 chr9 37645315 37645388 -104626056 + MIR SINE MIR 30 103 -105 311 247 54 21 chr9 37645607 37645700 -104625744 + MIR SINE MIR 30 125 -83 1989 99 37 0 chr9 37651459 37651732 -104619712 + AluSx SINE Alu 1 283 -29 188 250 91 45 chr9 37651735 37651823 -104619621 - MER5A DNA MER1_type -66 123 32 235 204 330 10 chr9 37652528 37652631 -104618813 + MIR SINE MIR 16 151 -111 2289 110 0 0 chr9 37652755 37653055 -104618389 + AluSx SINE Alu 1 300 -12 2007 149 0 3 chr9 37653056 37653352 -104618092 + AluSx SINE Alu 2 296 -16 542 231 176 52 chr9 37653353 37653818 -104617626 + L2 LINE L2 2740 3263 -50 245 313 30 30 chr9 37653885 37654051 -104617393 + L2 LINE L2 2554 2719 -595 976 114 23 0 chr9 37654056 37654187 -104617257 - AluJb SINE Alu -178 134 1 2308 104 0 0 chr9 37654241 37654539 -104616905 + AluSg SINE Alu 1 298 -12 2097 123 7 3 chr9 37654827 37655120 -104616324 - AluSc SINE Alu -15 294 1 351 354 70 0 chr9 37655125 37655283 -104616161 + L2 LINE L2 3104 3272 0 212 224 60 30 chr9 37659534 37659601 -104611843 - MIR3 SINE MIR -41 167 99 189 0 0 0 chr9 37659817 37659838 -104611606 + (CAA)n Simple_repeat Simple_repeat 1 21 0 247 261 15 0 chr9 37660267 37660332 -104611112 + (CA)n Simple_repeat Simple_repeat 1 66 0 32 0 0 0 chr9 37660591 37660623 -104610821 + AT_rich Low_complexity Low_complexity 1 32 0 836 143 0 0 chr9 37661140 37661266 -104610178 + FLAM_C SINE Alu 1 126 -7 216 97 0 0 chr9 37661269 37661300 -104610144 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1835 169 10 16 chr9 37662768 37663082 -104608362 + AluJb SINE Alu 1 312 0 219 356 23 0 chr9 37664694 37664781 -104606663 + L3 LINE CR1 1459 1547 -30 235 284 72 98 chr9 37665395 37665659 -104605785 + L2 LINE L2 2999 3255 -17 1788 148 7 7 chr9 37667137 37667407 -104604037 + AluSx SINE Alu 21 290 -22 307 191 76 19 chr9 37667417 37667522 -104603922 - L1ME4a LINE L1 -20 6101 5991 688 205 0 8 chr9 37667534 37667661 -104603783 - FLAM_A SINE Alu -7 126 1 356 153 0 32 chr9 37667786 37667960 -104603484 - L1MC4a LINE L1 -93 6028 5843 1123 139 106 14 chr9 37667960 37668088 -104603356 - MER30 DNA MER1_type 0 230 74 2175 98 34 0 chr9 37668088 37668385 -104603059 - AluY SINE Alu -4 307 1 1123 139 106 14 chr9 37668385 37668464 -104602980 - MER30 DNA MER1_type -156 74 4 356 153 0 32 chr9 37668464 37668605 -104602839 - L1MC4a LINE L1 -278 5843 5693 2149 98 0 54 chr9 37668605 37668921 -104602523 - AluSg SINE Alu -11 299 1 356 153 0 32 chr9 37668921 37668940 -104602504 - L1MC4a LINE L1 -428 5693 5673 1912 176 3 0 chr9 37668940 37669236 -104602208 - AluJo SINE Alu -15 297 1 356 153 0 32 chr9 37669236 37669251 -104602193 - L1MC4a LINE L1 -448 5673 5658 809 130 35 59 chr9 37669253 37669422 -104602022 - L1PA15 LINE L1 0 6165 6001 1633 148 111 7 chr9 37669722 37669992 -104601452 - AluJb SINE Alu -14 298 1 1729 159 28 14 chr9 37670087 37670370 -104601074 + AluJo SINE Alu 1 287 -25 2370 112 0 0 chr9 37671181 37671484 -104599960 - AluSx SINE Alu -9 303 1 1724 183 0 11 chr9 37671499 37671784 -104599660 - AluJo SINE Alu -24 288 7 1659 211 0 7 chr9 37671829 37672127 -104599317 - AluJb SINE Alu -16 296 1 2246 113 3 0 chr9 37672129 37672420 -104599024 - AluSq SINE Alu -21 292 1 1731 170 3 14 chr9 37672430 37672718 -104598726 - AluJo SINE Alu -23 289 5 323 269 31 8 chr9 37672727 37672857 -104598587 - L1ME4a LINE L1 -281 5889 5757 219 281 148 39 chr9 37672894 37673022 -104598422 + L3b LINE CR1 1324 1465 -118 839 149 0 47 chr9 37673045 37673193 -104598251 - FLAM_C SINE Alu -2 141 1 1295 188 36 10 chr9 37673200 37673503 -104597941 - L1MA4 LINE L1 0 6300 5990 2160 124 0 0 chr9 37674444 37674742 -104596702 - AluSx SINE Alu -14 298 1 232 370 22 7 chr9 37674813 37674948 -104596496 + MIR SINE MIR 5 141 -121 1596 149 100 0 chr9 37675190 37675343 -104596101 - AluY SINE Alu -24 287 151 1502 144 4 4 chr9 37675343 37675572 -104595872 - AluSg/x SINE Alu -11 299 71 1918 62 0 9 chr9 37675572 37675798 -104595646 - AluY SINE Alu -17 294 70 1596 149 100 0 chr9 37675798 37675904 -104595540 - AluY SINE Alu -159 152 1 1086 209 47 5 chr9 37675906 37676117 -104595327 - AluJo SINE Alu -92 220 1 2193 129 0 29 chr9 37676753 37677064 -104594380 + AluSx SINE Alu 1 302 -10 343 278 120 89 chr9 37677261 37677284 -104594160 - L2 LINE L2 0 3313 3292 2211 120 0 0 chr9 37677284 37677599 -104593845 + AluSx SINE Alu 1 312 0 343 278 120 89 chr9 37677599 37677957 -104593487 - L2 LINE L2 -21 3292 2920 542 57 0 0 chr9 37678031 37678101 -104593343 - AluS SINE Alu -235 77 8 1275 133 9 44 chr9 37678101 37678326 -104593118 + AluSq SINE Alu 86 302 -11 292 358 26 20 chr9 37678680 37678831 -104592613 - L2 LINE L2 -9 3263 3112 500 184 5 139 chr9 37679173 37679246 -104592198 - MER104 DNA MER2_type -1722 176 95 1865 157 48 3 chr9 37679246 37679540 -104591904 + AluJb SINE Alu 2 308 -4 500 184 5 139 chr9 37679540 37679636 -104591808 - MER104 DNA MER2_type -1803 95 35 2196 108 17 0 chr9 37679636 37679933 -104591511 + AluSx SINE Alu 10 311 -1 500 184 5 139 chr9 37679933 37679963 -104591481 - MER104 DNA MER2_type -1863 35 3 245 245 283 0 chr9 37679966 37680072 -104591372 - MIR SINE MIR -6 256 121 1860 167 0 23 chr9 37680527 37680832 -104590612 + AluJb SINE Alu 1 298 -14 195 42 0 0 chr9 37681750 37681774 -104589670 + (TTTTTG)n Simple_repeat Simple_repeat 5 28 0 1582 196 16 19 chr9 37681835 37682147 -104589297 + AluJb SINE Alu 1 311 -1 264 211 78 33 chr9 37682413 37682503 -104588941 + MIR SINE MIR 68 161 -101 2151 127 16 0 chr9 37682575 37682882 -104588562 + AluSx SINE Alu 1 312 0 823 197 27 69 chr9 37682899 37683087 -104588357 + LTR8A LTR ERV1 548 727 0 204 67 0 0 chr9 37683459 37683489 -104587955 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 6510 111 45 18 chr9 37683491 37685778 -104585666 - SVA Other Other -520 1385 2 207 0 0 0 chr9 37685778 37685801 -104585643 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 306 220 30 0 chr9 37685801 37685901 -104585543 + GA-rich Low_complexity Low_complexity 1 103 0 1947 161 10 3 chr9 37686658 37686968 -104584476 + AluSx SINE Alu 1 312 0 1389 148 0 5 chr9 37686974 37687190 -104584254 + MER4D LTR ERV1 10 224 -679 1432 160 12 4 chr9 37687216 37687460 -104583984 + MER4D LTR ERV1 441 686 -217 2566 141 7 32 chr9 37687467 37687870 -104583574 - LTR9 LTR ERV1 0 612 220 35343 118 93 90 chr9 37687952 37690686 -104580758 - HUERS-P3b LTR ERV1 -473 6945 4222 2389 99 0 3 chr9 37690686 37690990 -104580454 - AluSp SINE Alu -10 303 1 35343 118 93 90 chr9 37690990 37691976 -104579468 - HUERS-P3b LTR ERV1 -3196 4222 3241 2165 105 27 0 chr9 37691976 37692271 -104579173 - AluSx SINE Alu -9 303 1 35343 118 93 90 chr9 37692271 37694386 -104577058 - HUERS-P3b LTR ERV1 -4177 3241 1080 2366 89 0 35 chr9 37694386 37694699 -104576745 + AluSg SINE Alu 1 302 -8 35343 118 93 90 chr9 37694699 37695762 -104575682 - HUERS-P3b LTR ERV1 -6338 1080 22 3590 123 69 22 chr9 37695789 37696368 -104575076 - LTR9 LTR ERV1 -6 606 1 1412 87 78 5 chr9 37696376 37696582 -104574862 + MER4D LTR ERV1 652 872 0 242 190 52 35 chr9 37696853 37696911 -104574533 - 7SK RNA RNA -118 75 17 186 189 0 0 chr9 37696985 37697022 -104574422 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1818 186 0 0 chr9 37697784 37698090 -104573354 - AluJo SINE Alu -6 306 1 2087 148 0 0 chr9 37698224 37698527 -104572917 - AluSx SINE Alu -9 303 1 2077 135 130 18 chr9 37698594 37698979 -104572465 + MSTA LTR MaLR 1 428 0 2200 155 58 22 chr9 37699140 37699553 -104571891 + MSTA LTR MaLR 1 428 0 2018 142 3 0 chr9 37699553 37699876 -104571568 + MSTA-int LTR MaLR 1 324 -1327 29978 44 7 6 chr9 37699880 37703813 -104567631 - L1PA5 LINE L1 0 6154 2214 2515 70 0 0 chr9 37703813 37704111 -104567333 - AluY SINE Alu -13 298 1 29978 44 7 6 chr9 37704111 37704628 -104566816 - L1PA5 LINE L1 -3940 2214 1699 7691 168 27 8 chr9 37704630 37705943 -104565501 + MSTA-int LTR MaLR 315 1651 0 2277 136 97 0 chr9 37705943 37706333 -104565111 + MSTA LTR MaLR 1 428 0 2567 172 8 30 chr9 37706377 37706901 -104564543 - L1MB7 LINE L1 -1 6183 5672 1698 153 6 53 chr9 37706921 37707242 -104564202 + AluJb SINE Alu 1 306 -6 3313 171 117 60 chr9 37707242 37707618 -104563826 - L1MB5 LINE L1 -9 6165 5812 2345 96 0 0 chr9 37707618 37707910 -104563534 + AluSc SINE Alu 6 297 -12 3313 171 117 60 chr9 37707910 37708277 -104563167 - L1MB5 LINE L1 -362 5812 5467 1472 161 0 117 chr9 37708277 37708498 -104562946 - AluJo SINE Alu 0 302 133 324 0 0 0 chr9 37708498 37708534 -104562910 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1472 161 0 117 chr9 37708534 37708654 -104562790 - AluJo SINE Alu -169 133 1 3313 171 117 60 chr9 37708654 37709026 -104562418 - L1MB5 LINE L1 -707 5467 4964 2765 89 38 33 chr9 37709430 37709856 -104561588 - MSTA LTR MaLR 0 428 1 2027 136 4 0 chr9 37710075 37710383 -104561061 - AluSx SINE Alu 0 309 1 2061 136 3 3 chr9 37710410 37710697 -104560747 - AluSx SINE Alu -25 287 1 777 175 0 0 chr9 37710979 37711105 -104560339 + AluJ SINE Alu 2 127 -175 962 228 0 0 chr9 37711268 37711461 -104559983 - MER3 DNA MER1_type -5 204 12 2301 105 0 0 chr9 37711550 37711844 -104559600 - AluSx SINE Alu -18 294 1 647 177 15 23 chr9 37711923 37712053 -104559391 - FLAM_A SINE Alu -3 130 2 783 292 104 11 chr9 37712420 37712762 -104558682 - L1MC4a LINE L1 -530 5640 5496 534 165 0 0 chr9 37712832 37712923 -104558521 + AluJ SINE Alu 134 224 -88 * 701 149 0 0 chr9 37712914 37713021 -104558423 - AluJb SINE Alu -201 111 5 2038 150 0 0 chr9 37713311 37713605 -104557839 + AluSx SINE Alu 1 294 -18 532 260 40 6 chr9 37713650 37713827 -104557617 + L1MEd LINE L1 19 201 -5918 389 238 143 0 chr9 37713937 37714065 -104557379 + MIR SINE MIR 47 189 -62 231 232 85 12 chr9 37714073 37714155 -104557289 - MIR SINE MIR 0 262 175 1713 197 0 51 chr9 37714157 37714532 -104556912 + MLT1A2 LTR MaLR 6 361 -13 1034 256 152 75 chr9 37714562 37715166 -104556278 + L1MEd LINE L1 238 933 -5186 1970 157 3 0 chr9 37715166 37715460 -104555984 + AluSx SINE Alu 1 295 -17 1034 256 152 75 chr9 37715460 37715737 -104555707 + L1MEd LINE L1 933 1187 -4932 513 224 35 0 chr9 37715906 37716022 -104555422 + L2 LINE L2 3193 3312 -1 1837 157 20 3 chr9 37716152 37716445 -104554999 + AluJb SINE Alu 9 306 -6 650 270 46 77 chr9 37716884 37717273 -104554171 + L1M4 LINE L1 3613 3989 -2157 1462 218 38 48 chr9 37717285 37717657 -104553787 + L1MDa LINE L1 45 412 -6128 798 129 197 10 chr9 37717687 37717880 -104553564 + L1MDa LINE L1 2393 2621 -3919 * 1201 199 86 27 chr9 37717871 37718172 -104553272 + L1MD2 LINE L1 5825 6143 -216 394 192 58 33 chr9 37718180 37718300 -104553144 + L1MD2 LINE L1 6210 6332 -27 414 236 0 115 chr9 37718605 37718702 -104552742 + L1M4 LINE L1 4012 4084 -2062 2525 52 13 3 chr9 37718702 37719008 -104552436 - AluY SINE Alu -1 310 2 414 236 0 115 chr9 37719008 37719075 -104552369 + L1M4 LINE L1 4084 4157 -1989 1574 172 90 0 chr9 37719082 37719350 -104552094 + AluJb SINE Alu 1 292 -20 24 32 0 0 chr9 37719619 37719650 -104551794 + AT_rich Low_complexity Low_complexity 1 31 0 922 262 145 0 chr9 37719767 37720015 -104551429 - AluJb SINE Alu -16 286 3 2474 90 3 0 chr9 37720057 37720369 -104551075 - AluSp SINE Alu 0 313 1 1276 129 0 0 chr9 37720785 37720956 -104550488 + AluJb SINE Alu 131 301 -11 329 246 49 0 chr9 37721247 37721369 -104550075 - L1M4 LINE L1 -1088 5058 4931 5336 103 57 5 chr9 37721471 37722325 -104549119 - L1MA3 LINE L1 0 6305 5407 10178 146 10 15 chr9 37722428 37724685 -104546759 - HERVH LTR ERV1 -4207 3506 830 1156 202 24 29 chr9 37724753 37725178 -104546266 - HERVH LTR ERV1 -7254 459 1 2137 99 42 6 chr9 37725178 37725554 -104545890 - LTR7 LTR ERV1 0 450 1 2812 91 53 90 chr9 37725554 37725629 -104545815 - MER4-int LTR ERV1 -4292 2306 2230 4904 128 28 4 chr9 37725629 37726390 -104545054 + MER4E LTR ERV1 1 779 0 2812 91 53 90 chr9 37726390 37726592 -104544852 - MER4-int LTR ERV1 -4368 2230 2022 2139 128 7 0 chr9 37726592 37726890 -104544554 - AluSq SINE Alu -13 300 1 2812 91 53 90 chr9 37726890 37727191 -104544253 - MER4-int LTR ERV1 -4576 2022 1748 5380 119 81 37 chr9 37727195 37727794 -104543650 - MER4-int LTR ERV1 -5599 1159 507 1663 201 7 3 chr9 37727794 37728082 -104543362 - AluSx SINE Alu -23 289 1 5380 119 81 37 chr9 37728082 37728371 -104543073 - MER4-int LTR ERV1 -6251 507 232 1191 108 12 0 chr9 37728371 37728537 -104542907 - AluSg/x SINE Alu -15 295 128 535 127 0 0 chr9 37728537 37728616 -104542828 - AluJ/FLAM SINE Alu -232 80 2 298 70 0 23 chr9 37728616 37728659 -104542785 - MER4-int LTR ERV1 -6515 243 202 219 69 0 0 chr9 37728661 37728690 -104542754 + (A)n Simple_repeat Simple_repeat 1 29 0 1240 227 44 61 chr9 37728697 37728942 -104542502 - MER4-int LTR ERV1 -4129 2202 1963 2317 87 0 13 chr9 37728942 37729242 -104542202 - AluSg SINE Alu -14 296 1 1240 227 44 61 chr9 37729242 37729357 -104542087 - MER4-int LTR ERV1 -4368 1963 1848 2380 72 3 16 chr9 37729360 37729667 -104541777 - AluSg SINE Alu -7 303 1 306 177 0 62 chr9 37729726 37729822 -104541622 - MER4-int LTR ERV1 -5758 840 751 2729 115 76 29 chr9 37729859 37730150 -104541294 - MER4-int LTR ERV1 -6009 589 313 333 0 0 0 chr9 37730150 37730187 -104541257 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2729 115 76 29 chr9 37730187 37730390 -104541054 - MER4-int LTR ERV1 -6285 313 1 323 330 0 0 chr9 37730390 37730478 -104540966 - L2 LINE L2 -2 3311 3224 180 0 0 0 chr9 37731815 37731835 -104539609 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 2181 140 0 0 chr9 37732951 37733259 -104538185 - AluSx SINE Alu -3 309 2 730 262 118 54 chr9 37733876 37734265 -104537179 + L3 LINE CR1 1004 1417 -160 2452 65 13 10 chr9 37734354 37734660 -104536784 - AluSg SINE Alu -3 307 1 2177 93 3 0 chr9 37738164 37738464 -104532980 - AluSx SINE Alu -11 301 1 1809 141 6 33 chr9 37738805 37738986 -104532458 - L1MC3 LINE L1 -17 7768 7599 2221 83 7 3 chr9 37738986 37739286 -104532158 - AluSp SINE Alu -12 301 1 1809 141 6 33 chr9 37739286 37739437 -104532007 - L1MC3 LINE L1 -186 7599 7445 2323 75 0 0 chr9 37739437 37739731 -104531713 - AluY SINE Alu -16 295 2 553 281 0 0 chr9 37739816 37739930 -104531514 + Charlie8 DNA MER1_type 163 276 -2141 897 183 0 18 chr9 37739954 37740123 -104531321 + FRAM SINE Alu 2 167 -9 1702 166 7 7 chr9 37740451 37740747 -104530697 - AluJb SINE Alu -16 296 1 1650 130 0 4 chr9 37740852 37741099 -104530345 - AluSq SINE Alu -67 246 1 908 106 15 0 chr9 37741320 37741452 -104529992 - AluJo SINE Alu -178 134 1 21 36 0 0 chr9 37741579 37741607 -104529837 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr9 37741680 37741708 -104529736 + (T)n Simple_repeat Simple_repeat 1 28 0 470 111 0 0 chr9 37741709 37741772 -104529672 - MLT1A2 LTR MaLR -46 328 266 1970 105 41 7 chr9 37743237 37743532 -104527912 - AluSg SINE Alu -3 307 3 1983 92 0 41 chr9 37743576 37743897 -104527547 - AluSg SINE Alu 0 309 1 271 231 0 0 chr9 37743898 37743950 -104527494 + HERVH LTR ERV1 3503 3554 -4159 1223 252 0 0 chr9 37744015 37744293 -104527151 + HERVH LTR ERV1 4416 4693 -3020 * 4082 111 3 2 chr9 37744287 37744890 -104526554 + HERVH LTR ERV1 5400 6003 -1710 24 91 0 0 chr9 37745023 37745089 -104526355 + GC_rich Low_complexity Low_complexity 1 66 0 2197 78 0 14 chr9 37746780 37747111 -104524333 + AluSg SINE Alu 3 329 0 475 213 160 69 chr9 37747136 37747324 -104524120 + L2 LINE L2 3104 3308 -5 363 298 111 18 chr9 37747334 37747505 -104523939 + MIR3 SINE MIR 13 199 -9 2177 93 3 0 chr9 37750559 37750859 -104520585 - AluSx SINE Alu -11 301 1 1820 138 6 33 chr9 37751201 37751382 -104520062 - L1MC3 LINE L1 -17 7768 7599 2221 83 7 3 chr9 37751382 37751682 -104519762 - AluSp SINE Alu -12 301 1 1820 138 6 33 chr9 37751682 37751833 -104519611 - L1MC3 LINE L1 -186 7599 7445 1990 125 0 3 chr9 37751833 37752128 -104519316 - AluSc SINE Alu -15 294 1 2243 72 3 31 chr9 37752129 37752449 -104518995 - AluSp SINE Alu 0 313 3 1335 181 10 61 chr9 37752454 37752632 -104518812 - AluJo SINE Alu -17 295 138 1976 122 3 31 chr9 37752632 37752953 -104518491 - AluSx SINE Alu 0 312 1 1335 181 10 61 chr9 37752953 37753084 -104518360 - AluJo SINE Alu -174 138 2 1986 147 0 0 chr9 37753237 37753543 -104517901 + AluSx SINE Alu 1 306 -6 2096 97 0 31 chr9 37753750 37754070 -104517374 + AluSq SINE Alu 1 310 -3 525 196 9 27 chr9 37754079 37754191 -104517253 - L1ME LINE L1 -502 5668 5559 1234 188 116 72 chr9 37754194 37754625 -104516819 + LTR7 LTR ERV1 1 450 0 1575 199 3 6 chr9 37754870 37755181 -104516263 - AluJo SINE Alu -2 310 1 196 137 39 0 chr9 37755368 37755419 -104516025 + (TA)n Simple_repeat Simple_repeat 2 54 0 1907 140 0 7 chr9 37755441 37755733 -104515711 - AluSx SINE Alu -22 290 1 2237 102 0 0 chr9 37755747 37756050 -104515394 - AluSg SINE Alu -7 303 1 5118 97 15 0 chr9 37756089 37756770 -104514674 - LTR8 LTR ERV1 0 691 1 1035 170 11 6 chr9 37756900 37757082 -104514362 + AluJo SINE Alu 2 184 -128 2159 56 42 14 chr9 37757378 37757664 -104513780 - AluY SINE Alu -15 296 3 617 173 0 0 chr9 37757673 37757777 -104513667 + Cheshire DNA MER1_type 795 898 -1522 1505 138 59 62 chr9 37757872 37758073 -104513371 - AluJb SINE Alu -6 306 105 2098 129 0 0 chr9 37758073 37758375 -104513069 + AluSx SINE Alu 1 302 -10 1505 138 59 62 chr9 37758375 37758478 -104512966 - AluJb SINE Alu -207 105 3 1515 184 33 21 chr9 37758892 37758923 -104512521 + Cheshire DNA MER1_type 896 925 -1495 2067 97 0 14 chr9 37758923 37759211 -104512233 + AluSx SINE Alu 20 303 -9 1515 184 33 21 chr9 37759211 37759516 -104511928 + Cheshire DNA MER1_type 925 1236 -1184 623 124 21 10 chr9 37759519 37759616 -104511828 + MER4A LTR ERV1 1 98 -566 1598 171 6 35 chr9 37759616 37759972 -104511472 + MER4A LTR ERV1 261 664 0 671 188 88 50 chr9 37759974 37760443 -104511001 + MER4A-int LTR ERV1 1 624 -5974 279 0 0 0 chr9 37760444 37760475 -104510969 + (TG)n Simple_repeat Simple_repeat 2 32 0 414 304 20 69 chr9 37760539 37760743 -104510701 + MER4A-int LTR ERV1 383 576 -6182 311 187 0 44 chr9 37760865 37760956 -104510488 + MER4A-int LTR ERV1 751 837 -5761 228 174 0 65 chr9 37760979 37761025 -104510419 + LTR49 LTR ERV1 271 313 -282 15185 130 85 90 chr9 37761045 37761375 -104510069 + MER4A-int LTR ERV1 499 829 -5769 2235 92 0 13 chr9 37761375 37761689 -104509755 - AluSg SINE Alu 0 310 1 15185 130 85 90 chr9 37761689 37762270 -104509174 + MER4A-int LTR ERV1 829 1411 -5187 2245 89 3 0 chr9 37762270 37762573 -104508871 + AluSp SINE Alu 1 304 -9 15185 130 85 90 chr9 37762573 37763198 -104508246 + MER4A-int LTR ERV1 1411 2038 -4560 2139 92 3 3 chr9 37763198 37763490 -104507954 + AluSq SINE Alu 1 292 -21 15185 130 85 90 chr9 37763490 37764529 -104506915 + MER4A-int LTR ERV1 2038 3081 -3517 2707 7 0 0 chr9 37764529 37764829 -104506615 - AluY SINE Alu -11 300 1 15185 130 85 90 chr9 37764829 37765870 -104505574 + MER4A-int LTR ERV1 3081 4126 -2472 2158 85 7 7 chr9 37765870 37766165 -104505279 + AluY SINE Alu 1 295 -16 15185 130 85 90 chr9 37766165 37767196 -104504248 + MER4A-int LTR ERV1 4126 6598 0 542 134 31 21 chr9 37767197 37767294 -104504150 + MER4A LTR ERV1 1 98 -566 1474 151 3 26 chr9 37767294 37767585 -104503859 + MER4A LTR ERV1 261 603 -61 300 71 0 0 chr9 37767580 37767622 -104503822 - MER58 DNA MER1_type -80 2340 2299 * 1633 143 61 14 chr9 37767696 37767976 -104503468 + AluSx SINE Alu 1 293 -19 355 302 128 27 chr9 37767976 37768234 -104503210 - L2 LINE L2 -112 3201 2918 1994 106 0 0 chr9 37768235 37768509 -104502935 + AluSg SINE Alu 1 274 -36 1176 181 0 68 chr9 37768774 37769039 -104502405 - AluJo SINE Alu -45 267 21 569 119 12 0 chr9 37769041 37769125 -104502319 + MER67A LTR ERV1 100 184 -359 383 114 0 100 chr9 37769117 37769187 -104502257 + AluJo/FLAM SINE Alu 64 118 -184 * 1475 143 0 17 chr9 37769190 37769427 -104502017 + AluSx SINE Alu 1 233 -79 345 87 0 0 chr9 37769427 37769473 -104501971 - MER41A-int LTR ERV1 -4268 1995 1950 310 176 118 47 chr9 37769476 37769561 -104501883 - MER41A-int LTR ERV1 -4211 1735 1645 254 263 0 18 chr9 37769563 37769620 -104501824 - tRNA-Glu-GAG tRNA tRNA -13 62 7 3459 140 68 40 chr9 37769627 37770056 -104501388 - MER41A-int LTR ERV1 -4367 1579 1125 1991 128 0 3 chr9 37770056 37770354 -104501090 - AluSg SINE Alu -9 301 5 3459 140 68 40 chr9 37770354 37770552 -104500892 - MER41A-int LTR ERV1 -4821 1125 934 2961 134 95 8 chr9 37770552 37771309 -104500135 - MER41A-int LTR ERV1 -5498 448 2 1078 80 0 49 chr9 37771395 37771557 -104499887 - MER41A LTR ERV1 0 554 401 839 130 8 0 chr9 37771558 37771689 -104499755 - AluJb SINE Alu -12 300 169 7353 130 65 22 chr9 37771692 37771786 -104499658 + MER52C LTR ERV1 1 89 -1189 2289 91 0 0 chr9 37771786 37772095 -104499349 - AluY SINE Alu -2 309 1 7353 130 65 22 chr9 37772095 37773223 -104498221 + MER52C LTR ERV1 89 1276 -2 3351 118 92 4 chr9 37773225 37773749 -104497695 + MER52C-int LTR ERV1 2 571 -6520 6562 166 37 15 chr9 37773888 37775228 -104496216 + MER52C-int LTR ERV1 1761 3204 -3887 4064 161 22 18 chr9 37775247 37775930 -104495514 + MER52C-int LTR ERV1 807 1492 -5599 2191 164 42 79 chr9 37775941 37776626 -104494818 + MER52C-int LTR ERV1 991 1700 -3886 2184 81 0 3 chr9 37776626 37776937 -104494507 + AluY SINE Alu 1 310 0 2191 164 42 79 chr9 37776937 37777058 -104494386 + MER52C-int LTR ERV1 1700 1824 -3762 2311 78 0 7 chr9 37777058 37777365 -104494079 + AluSc SINE Alu 5 309 0 2191 164 42 79 chr9 37777365 37777383 -104494061 + MER52C-int LTR ERV1 1824 1841 -3745 2063 140 0 3 chr9 37777383 37777691 -104493753 + AluSx SINE Alu 1 307 -5 2191 164 42 79 chr9 37777691 37777750 -104493694 + MER52C-int LTR ERV1 1841 1938 -3648 * 3754 133 105 29 chr9 37777742 37778444 -104493000 + MER52C-int LTR ERV1 592 1347 -6469 325 100 17 17 chr9 37778430 37778490 -104492954 + MER52C-int LTR ERV1 1051 1110 -7010 * 447 220 37 0 chr9 37778489 37778634 -104492810 + MER52C-int LTR ERV1 1879 2000 -3217 1712 176 31 6 chr9 37779039 37779371 -104492073 + MER52C-int LTR ERV1 3269 3591 -3405 198 0 0 0 chr9 37779371 37779393 -104492051 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1712 176 31 6 chr9 37779393 37779429 -104492015 + MER52C-int LTR ERV1 3591 4954 -2042 29 0 0 0 chr9 37779444 37779473 -104491971 + AT_rich Low_complexity Low_complexity 1 29 0 628 201 50 60 chr9 37779474 37779673 -104491771 + L1MA2 LINE L1 6102 6298 -6 24 67 0 0 chr9 37779996 37780041 -104491403 + AT_rich Low_complexity Low_complexity 1 45 0 1996 135 0 0 chr9 37780283 37780580 -104490864 + AluSx SINE Alu 1 297 -15 2140 107 3 0 chr9 37783316 37783614 -104487830 + AluSc SINE Alu 1 299 -10 1981 168 143 32 chr9 37783614 37784415 -104487029 + MER52C-int LTR ERV1 2270 4690 -1256 378 58 39 0 chr9 37784419 37784471 -104486973 + MER52C-int LTR ERV1 5976 6029 -1176 * 1297 128 20 0 chr9 37784468 37784663 -104486781 + MER52C-int LTR ERV1 6892 7090 -1 1165 121 12 0 chr9 37784664 37784837 -104486607 + MER52C LTR ERV1 1 175 -1103 1505 164 0 0 chr9 37784848 37785086 -104486358 - AluSq SINE Alu -75 238 1 883 73 16 0 chr9 37785086 37785210 -104486234 - MER4-int LTR ERV1 -4171 2427 2302 1979 119 38 13 chr9 37785210 37785584 -104485860 - LTR7 LTR ERV1 0 450 1 3411 127 11 26 chr9 37785585 37786150 -104485294 - HERVH LTR ERV1 -1 7712 7157 18598 45 1 2 chr9 37786268 37790366 -104481078 - L1PA5 LINE L1 -141 6013 1922 943 175 57 9 chr9 37790466 37790694 -104480750 + L1 LINE L1 1782 2020 -5189 1877 143 21 0 chr9 37790701 37790981 -104480463 + AluSx SINE Alu 1 286 -26 2305 163 5 16 chr9 37791014 37791451 -104479993 - L1 LINE L1 -2051 5157 4726 470 115 39 13 chr9 37791454 37791532 -104479912 + L1 LINE L1 5143 5222 -1986 266 303 0 0 chr9 37791532 37791598 -104479846 - MER61B LTR ERV1 -184 241 176 6143 142 53 6 chr9 37791598 37793583 -104477861 + L1MA4A LINE L1 4227 6296 -7 383 197 30 61 chr9 37793588 37793720 -104477724 + LTR48 LTR ERV1 586 713 -74 3065 190 25 92 chr9 37793721 37794780 -104476664 + L1M4 LINE L1 4373 5360 -786 1508 184 0 4 chr9 37794786 37795042 -104476402 + AluJb SINE Alu 1 255 -57 9365 145 11 15 chr9 37845093 37847350 -104424094 - HERVH LTR ERV1 -4207 3506 830 1046 202 24 29 chr9 37847418 37847843 -104423601 - HERVH LTR ERV1 -7254 459 1 1982 99 42 6 chr9 37847843 37848219 -104423225 - LTR7 LTR ERV1 0 450 1 2571 88 53 92 chr9 37848219 37848294 -104423150 - HERVH LTR ERV1 -4292 2306 2230 4796 128 28 4 chr9 37848294 37849055 -104422389 + MER4E LTR ERV1 1 779 0 2571 88 53 92 chr9 37849055 37849257 -104422187 - HERVH LTR ERV1 -4368 2230 2022 2135 128 7 0 chr9 37849257 37849555 -104421889 - AluSq SINE Alu -13 300 1 2571 88 53 92 chr9 37849555 37849841 -104421603 - HERVH LTR ERV1 -4576 2022 1764 4958 119 81 37 chr9 37849860 37850459 -104420985 - HERVH LTR ERV1 -5599 1159 507 1680 201 7 3 chr9 37850459 37850747 -104420697 - AluSx SINE Alu -23 289 1 4958 119 81 37 chr9 37850747 37851036 -104420408 - HERVH LTR ERV1 -6251 507 232 1181 108 12 0 chr9 37851036 37851202 -104420242 - AluSg/x SINE Alu -15 297 130 534 125 0 0 chr9 37851202 37851282 -104420162 - AluJ/FLAM SINE Alu -232 80 1 264 71 0 24 chr9 37851282 37851324 -104420120 - HERVH LTR ERV1 -6516 242 202 219 69 0 0 chr9 37851326 37851355 -104420089 + (A)n Simple_repeat Simple_repeat 1 29 0 1115 230 43 23 chr9 37851423 37851607 -104419837 - HERVH LTR ERV1 -4178 2153 1959 2284 87 0 13 chr9 37851607 37851907 -104419537 - AluSg SINE Alu -14 296 1 1115 230 43 23 chr9 37851907 37852022 -104419422 - HERVH LTR ERV1 -4372 1959 1848 2348 72 3 16 chr9 37852025 37852332 -104419112 - AluSg SINE Alu -7 303 1 268 198 0 62 chr9 37852392 37852488 -104418956 - HERVH LTR ERV1 -5758 840 751 2509 107 66 9 chr9 37852525 37852816 -104418628 - HERVH LTR ERV1 -6009 589 316 333 0 0 0 chr9 37852816 37852853 -104418591 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2509 107 66 9 chr9 37852853 37853056 -104418388 - HERVH LTR ERV1 -6282 316 1 354 330 0 0 chr9 37853056 37853144 -104418300 - L2 LINE L2 -2 3270 3183 180 0 0 0 chr9 37854481 37854501 -104416943 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 2190 140 0 0 chr9 37855617 37855925 -104415519 - AluSx SINE Alu -3 309 2 240 250 0 0 chr9 37857316 37857364 -104414080 + MIR SINE MIR 93 140 -68 1933 178 0 3 chr9 37857582 37857886 -104413558 - AluJo SINE Alu -9 303 1 450 318 143 15 chr9 37858068 37858411 -104413033 - L2 LINE L2 -958 2356 1970 1803 169 13 26 chr9 37859516 37859824 -104411620 - AluJb SINE Alu -8 304 1 1843 131 62 0 chr9 37860862 37861137 -104410307 - AluSx SINE Alu -20 292 1 1193 152 52 45 chr9 37861405 37861674 -104409770 - L1MA10 LINE L1 -19 6315 6045 23 33 0 0 chr9 37863236 37863266 -104408178 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr9 37863598 37863633 -104407811 + AT_rich Low_complexity Low_complexity 1 35 0 553 267 76 28 chr9 37863881 37863952 -104407492 - L1MC4a LINE L1 -338 5783 5717 2082 139 10 7 chr9 37863952 37864262 -104407182 - AluSx SINE Alu -1 311 1 553 267 76 28 chr9 37864262 37864537 -104406907 - L1MC4a LINE L1 -404 5717 5497 226 229 0 59 chr9 37864564 37864591 -104406853 + T-rich Low_complexity Low_complexity 4 31 -83 6712 115 27 17 chr9 37864591 37865651 -104405793 - MER11C LTR ERVK 0 1071 1 226 229 0 59 chr9 37865651 37865741 -104405703 + T-rich Low_complexity Low_complexity 31 114 0 764 176 0 0 chr9 37865926 37866068 -104405376 - L1M4b LINE L1 -6631 228 87 2240 110 0 10 chr9 37866178 37866477 -104404967 + AluSg SINE Alu 1 296 -14 536 221 33 61 chr9 37866479 37866660 -104404784 - MIR SINE MIR 0 262 87 287 241 58 0 chr9 37866698 37866785 -104404659 - L1ME LINE L1 -342 5779 5688 351 0 0 0 chr9 37866962 37867001 -104404443 + (CA)n Simple_repeat Simple_repeat 1 39 0 286 211 37 46 chr9 37867007 37867116 -104404328 - L1MC4a LINE L1 -1874 5934 5827 268 140 0 0 chr9 37867156 37867206 -104404238 - L1MC4a LINE L1 -1984 5824 5775 3285 142 19 2 chr9 37867855 37868427 -104403017 - L1MB2 LINE L1 -2 6169 5588 459 323 28 23 chr9 37868520 37868707 -104402737 + MIR SINE MIR 3 188 -64 336 336 163 27 chr9 37869508 37869949 -104401495 - L2 LINE L2 -978 2336 1836 1309 201 101 90 chr9 37869955 37870412 -104401032 - MLT1C LTR MaLR 0 467 6 2181 31 0 4 chr9 37870922 37871183 -104400261 - L1PA5 LINE L1 -3 6151 5892 28803 42 1 1 chr9 37871283 37875327 -104396117 - L1PA5 LINE L1 -476 5678 1633 432 162 34 77 chr9 37875397 37875514 -104395930 - L1MB8 LINE L1 -1 6177 6066 3288 167 48 31 chr9 37875607 37876343 -104395101 - L1MB8 LINE L1 -1 6177 5430 2300 63 0 3 chr9 37876412 37876697 -104394747 - AluY SINE Alu -7 304 21 1961 136 3 3 chr9 37876801 37877095 -104394349 + AluSx SINE Alu 1 294 -18 480 259 59 16 chr9 37877096 37877351 -104394093 - L1MC5 LINE L1 -196 7765 7500 880 143 8 0 chr9 37877354 37877487 -104393957 - AluJb SINE Alu -178 134 1 459 251 78 94 chr9 37877526 37877819 -104393625 - L1MC5 LINE L1 -516 7445 7149 1538 148 109 7 chr9 37877819 37878102 -104393342 - AluSx SINE Alu 0 312 1 459 251 78 94 chr9 37878102 37878170 -104393274 - L1MC5 LINE L1 -812 7149 7081 2306 56 0 0 chr9 37878170 37878440 -104393004 + AluY SINE Alu 27 296 -15 459 251 78 94 chr9 37878440 37878579 -104392865 - L1MC5 LINE L1 -880 7081 6952 1267 197 0 0 chr9 37878645 37878853 -104392591 - AluJo SINE Alu -20 292 85 236 279 0 0 chr9 37878860 37878928 -104392516 - L1MC4a LINE L1 -891 6917 6850 311 313 9 26 chr9 37878936 37879051 -104392393 - L1MC4 LINE L1 0 8042 7930 488 287 144 15 chr9 37879183 37879517 -104391927 - L1ME LINE L1 -382 5788 5412 422 209 139 47 chr9 37879533 37879705 -104391739 - L2 LINE L2 0 3313 3126 1847 165 58 9 chr9 37879713 37880059 -104391385 - MLT1A1 LTR MaLR -2 363 1 562 55 102 0 chr9 37880361 37880599 -104390845 + (TA)n Simple_repeat Simple_repeat 1 262 0 486 198 66 25 chr9 37880599 37880720 -104390724 - FLAM_C SINE Alu -7 126 1 1204 133 29 151 chr9 37880734 37880852 -104390592 - L1MC3 LINE L1 0 7785 7654 3019 157 36 79 chr9 37880852 37881572 -104389872 - LTR8 LTR ERV1 0 691 3 1204 133 29 151 chr9 37881572 37881836 -104389608 - L1MC3 LINE L1 -131 7654 7450 787 268 74 9 chr9 37881850 37882175 -104389269 - L1ME LINE L1 -2005 4141 3796 217 284 0 37 chr9 37882182 37882263 -104389181 + (CATATA)n Simple_repeat Simple_repeat 5 82 0 279 257 4 26 chr9 37882263 37882379 -104389065 - L1ME LINE L1 -2369 3777 3659 904 81 0 0 chr9 37882672 37882783 -104388661 + AluSx SINE Alu 1 111 -201 446 194 16 0 chr9 37882790 37882914 -104388530 + (TA)n Simple_repeat Simple_repeat 1 126 0 1322 125 0 0 chr9 37882914 37883106 -104388338 + AluSx SINE Alu 121 312 0 524 277 141 0 chr9 37883343 37883527 -104387917 + L2 LINE L2 2591 2800 -514 366 247 0 0 chr9 37883530 37883603 -104387841 + L2 LINE L2 3241 3313 0 201 322 0 58 chr9 37883624 37883711 -104387733 - MIR SINE MIR -95 113 32 242 378 98 47 chr9 37884799 37885095 -104386349 + L2 LINE L2 2960 3270 -2 189 0 0 0 chr9 37885262 37885283 -104386161 + (TG)n Simple_repeat Simple_repeat 2 22 0 1550 167 0 30 chr9 37885444 37885735 -104385709 + AluJo SINE Alu 29 311 0 703 287 27 31 chr9 37885736 37885997 -104385447 - MIR SINE MIR -1 261 2 513 187 56 173 chr9 37886567 37886976 -104384468 - L1MC4 LINE L1 0 8042 7697 4276 96 14 8 chr9 37886976 37887611 -104383833 - L1MA3 LINE L1 0 6305 5667 513 187 56 173 chr9 37887611 37887687 -104383757 - L1MC4 LINE L1 -345 7697 7614 401 131 37 37 chr9 37887687 37887794 -104383650 + CT-rich Low_complexity Low_complexity 5 111 0 2023 157 3 6 chr9 37887802 37888114 -104383330 - AluSx SINE Alu -1 311 1 21 0 0 0 chr9 37888122 37888143 -104383301 + AT_rich Low_complexity Low_complexity 1 21 0 1917 154 0 7 chr9 37888145 37888437 -104383007 + AluJb SINE Alu 1 290 -22 1739 161 13 7 chr9 37888609 37888907 -104382537 - AluSx SINE Alu -12 300 1 348 253 0 0 chr9 37888908 37888983 -104382461 - L1ME LINE L1 -613 5553 5479 213 213 0 0 chr9 37888985 37889032 -104382412 + CT-rich Low_complexity Low_complexity 2 48 0 450 223 33 33 chr9 37889145 37889266 -104382178 - L2 LINE L2 0 3313 3193 * 886 306 78 45 chr9 37889258 37889810 -104381634 + L2 LINE L2 2218 2787 -527 603 299 113 14 chr9 37890948 37891169 -104380275 - MIR SINE MIR 0 262 20 2180 116 3 0 chr9 37891169 37891463 -104379981 + AluSx SINE Alu 1 295 -17 4244 149 30 26 chr9 37893370 37894359 -104377085 - HUERS-P3 LTR ERV1 -6530 888 17 3315 126 69 22 chr9 37894381 37894960 -104376484 - LTR9 LTR ERV1 -6 606 1 1311 87 78 5 chr9 37894968 37895174 -104376270 + MER4D LTR ERV1 652 872 0 186 189 0 0 chr9 37895577 37895614 -104375830 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1830 186 0 0 chr9 37896376 37896682 -104374762 - AluJo SINE Alu -6 306 1 2070 148 0 0 chr9 37896816 37897119 -104374325 - AluSx SINE Alu -9 303 1 2030 135 130 18 chr9 37897186 37897571 -104373873 + MSTA LTR MaLR 1 428 0 2151 155 58 22 chr9 37897732 37898145 -104373299 + MSTA LTR MaLR 1 428 0 1867 142 3 0 chr9 37898145 37898468 -104372976 + MSTA-int LTR MaLR 1 324 -1327 28025 44 7 6 chr9 37898472 37902405 -104369039 - L1PA5 LINE L1 0 6154 2214 2479 70 0 0 chr9 37902405 37902703 -104368741 - AluY SINE Alu -13 298 1 28025 44 7 6 chr9 37902703 37903220 -104368224 - L1PA5 LINE L1 -3940 2214 1699 7086 168 27 8 chr9 37903222 37904535 -104366909 + MSTA-int LTR MaLR 315 1651 0 2245 136 97 0 chr9 37904535 37904925 -104366519 + MSTA LTR MaLR 1 428 0 2466 172 8 30 chr9 37904969 37905493 -104365951 - L1MB7 LINE L1 -1 6183 5672 1707 153 6 53 chr9 37905513 37905834 -104365610 + AluJb SINE Alu 1 306 -6 2987 171 117 60 chr9 37905834 37906210 -104365234 - L1MB5 LINE L1 -9 6165 5812 2330 96 0 0 chr9 37906210 37906502 -104364942 + AluSc SINE Alu 6 297 -12 2987 171 117 60 chr9 37906502 37906869 -104364575 - L1MB5 LINE L1 -362 5812 5467 1467 161 0 117 chr9 37906869 37907090 -104364354 - AluJo SINE Alu 0 302 133 324 0 0 0 chr9 37907090 37907126 -104364318 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1467 161 0 117 chr9 37907126 37907246 -104364198 - AluJo SINE Alu -169 133 1 2987 171 117 60 chr9 37907246 37907618 -104363826 - L1MB5 LINE L1 -707 5467 4964 2720 89 38 33 chr9 37908022 37908448 -104362996 - MSTA LTR MaLR 0 428 1 2013 136 4 0 chr9 37908667 37908975 -104362469 - AluSx SINE Alu 0 309 1 2021 139 3 7 chr9 37909002 37909290 -104362154 - AluSx SINE Alu -25 287 1 785 175 0 0 chr9 37909572 37909698 -104361746 + AluJ SINE Alu 2 127 -175 891 228 0 0 chr9 37909861 37910054 -104361390 - MER3 DNA MER1_type -5 204 12 2280 105 0 0 chr9 37910143 37910437 -104361007 - AluSx SINE Alu -18 294 1 652 177 15 23 chr9 37910516 37910646 -104360798 - FLAM_A SINE Alu -3 130 2 675 298 107 9 chr9 37911013 37911339 -104360105 - L1MC4a LINE L1 -1941 5867 5510 538 165 0 0 chr9 37911425 37911516 -104359928 + AluJ SINE Alu 134 224 -88 * 699 149 0 0 chr9 37911507 37911614 -104359830 - AluJb SINE Alu -201 111 5 2030 150 0 0 chr9 37911904 37912198 -104359246 + AluSx SINE Alu 1 294 -18 474 260 40 6 chr9 37912243 37912420 -104359024 + L1MEd LINE L1 19 201 -5918 416 238 143 0 chr9 37912530 37912658 -104358786 + MIR SINE MIR 47 189 -62 260 219 61 24 chr9 37912666 37912748 -104358696 - MIR SINE MIR -3 259 175 1554 197 0 51 chr9 37912750 37913125 -104358319 + MLT1A2 LTR MaLR 6 361 -13 759 256 154 76 chr9 37913155 37913758 -104357686 + L1MEd LINE L1 238 933 -5186 1981 157 3 0 chr9 37913758 37914052 -104357392 + AluSx SINE Alu 1 295 -17 759 256 154 76 chr9 37914052 37914329 -104357115 + L1MEd LINE L1 933 1187 -4932 562 224 35 0 chr9 37914498 37914614 -104356830 + L2 LINE L2 3193 3312 -1 1843 157 20 3 chr9 37914744 37915037 -104356407 + AluJb SINE Alu 9 306 -6 545 270 46 77 chr9 37915476 37915865 -104355579 + L1M4 LINE L1 3613 3989 -2157 1320 218 38 48 chr9 37915877 37916249 -104355195 + L1MDa LINE L1 45 412 -6128 750 128 192 2 chr9 37916281 37916472 -104354972 + L1MDa LINE L1 2420 2621 -3919 1041 204 93 11 chr9 37916474 37916754 -104354690 + L1MD2 LINE L1 5831 6133 -226 1336 178 8 23 chr9 37916908 37917167 -104354277 - AluJb SINE Alu -57 255 1 2806 190 25 92 chr9 37917173 37918232 -104353212 - L1M4 LINE L1 -786 5360 4373 341 197 30 61 chr9 37918233 37918365 -104353079 - LTR48 LTR ERV1 -74 713 586 5817 143 53 6 chr9 37918370 37920355 -104351089 - L1MA4A LINE L1 -7 6296 4227 242 303 0 0 chr9 37920355 37920421 -104351023 + MER61B LTR ERV1 176 241 -184 443 136 4 1 chr9 37920421 37920499 -104350945 - L1 LINE L1 -1986 4160 4081 2179 163 5 16 chr9 37920502 37920939 -104350505 + L1 LINE L1 3664 4095 -2051 1901 156 20 0 chr9 37920950 37921252 -104350192 - AluSx SINE Alu -4 308 1 1799 254 114 2 chr9 37921259 37921845 -104349599 - L1M2b LINE L1 -5189 2020 1369 419 222 0 0 chr9 37921845 37921926 -104349518 - MER20 DNA MER1_type -48 171 91 669 168 35 28 chr9 37921926 37922069 -104349375 + MER5A DNA MER1_type 46 189 0 1637 187 42 55 chr9 37922111 37922151 -104349293 - MLT2A2 LTR ERVL 0 554 515 261 57 0 0 chr9 37922151 37922186 -104349258 + (TG)n Simple_repeat Simple_repeat 1 35 0 1637 187 42 55 chr9 37922186 37922699 -104348745 - MLT2A2 LTR ERVL -39 515 13 269 285 73 32 chr9 37922924 37923047 -104348397 + L3 LINE CR1 1346 1473 -104 1193 193 67 0 chr9 37923315 37923538 -104347906 + MER8 DNA MER2_type 1 238 -1 1309 191 76 39 chr9 37923599 37923955 -104347489 + MLT1A2 LTR MaLR 1 369 -5 2442 199 9 11 chr9 37923960 37924502 -104346942 + MLT1A2-int LTR MaLR 1 541 -830 278 244 33 11 chr9 37924555 37924645 -104346799 + MLT1A2-int LTR MaLR 676 767 -968 1896 183 25 8 chr9 37924707 37925105 -104346339 + MLT1A2-int LTR MaLR 1331 1735 0 1476 204 30 28 chr9 37925108 37925470 -104345974 + MLT1A2 LTR MaLR 4 366 -8 695 182 15 23 chr9 37925608 37925740 -104345704 + FLAM_C SINE Alu 1 131 -12 1716 129 82 18 chr9 37925775 37926054 -104345390 - AluSx SINE Alu -13 299 3 382 294 59 13 chr9 37926056 37926209 -104345235 + MIR3 SINE MIR 44 203 -5 882 115 0 23 chr9 37926371 37926501 -104344943 + FLAM_C SINE Alu 1 127 -6 266 54 0 0 chr9 37927403 37927440 -104344004 - L1PA7 LINE L1 -10 6144 6108 2112 104 0 0 chr9 37928290 37928560 -104342884 + AluY SINE Alu 1 270 -41 278 113 0 38 chr9 37928660 37928713 -104342731 - L1MC4 LINE L1 -517 7525 7475 739 247 34 11 chr9 37928717 37928980 -104342464 - L1MC4 LINE L1 -633 7409 7141 2593 232 23 60 chr9 37929042 37929815 -104341629 - MER21B LTR ERV1 -107 756 12 1482 226 31 19 chr9 37929845 37930269 -104341175 - L1MC4 LINE L1 -911 7131 6703 298 259 17 9 chr9 37930356 37930472 -104340972 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 233 227 0 82 chr9 37930716 37930813 -104340631 - L1MC4a LINE L1 -172 7636 7548 * 458 187 22 82 chr9 37930799 37930887 -104340557 - L1M4 LINE L1 -1164 4982 4903 2387 93 0 3 chr9 37930887 37931187 -104340257 + AluSc SINE Alu 1 299 -10 458 187 22 82 chr9 37931187 37931232 -104340212 - L1M4 LINE L1 -1243 4903 4857 369 239 210 21 chr9 37931930 37932276 -104339168 + L1ME4a LINE L1 5613 6053 -68 2440 100 0 0 chr9 37932276 37932586 -104338858 - AluSx SINE Alu -2 310 1 369 239 210 21 chr9 37932586 37932658 -104338786 + L1ME4a LINE L1 6053 6110 -11 826 137 8 8 chr9 37934271 37934402 -104337042 - FLAM_C SINE Alu -2 131 1 197 319 1 62 chr9 37935210 37935292 -104336152 - MIR SINE MIR -133 75 5 2001 136 14 0 chr9 37935632 37935919 -104335525 - AluSq SINE Alu -22 291 1 2015 158 0 7 chr9 37936052 37936355 -104335089 + AluJb SINE Alu 1 301 -11 25 0 0 0 chr9 37936800 37936825 -104334619 + AT_rich Low_complexity Low_complexity 1 25 0 2839 154 28 9 chr9 37939061 37939601 -104331843 - L1MB5 LINE L1 0 6174 5625 638 239 45 57 chr9 37939601 37939848 -104331596 - L1MC4 LINE L1 -2054 5754 5511 2136 69 0 8 chr9 37941036 37941297 -104330147 + AluSc SINE Alu 39 297 -12 950 147 38 0 chr9 37941297 37941454 -104329990 + AluSg/x SINE Alu 132 294 -16 254 295 42 84 chr9 37941472 37941638 -104329806 - L2 LINE L2 -92 3180 3022 949 184 30 0 chr9 37941642 37941810 -104329634 - L1MC1 LINE L1 -185 6148 5976 307 342 83 50 chr9 37941810 37942107 -104329337 - L2 LINE L2 -250 3022 2712 296 216 98 46 chr9 37942231 37942384 -104329060 - L1ME3 LINE L1 -107 6055 5895 215 31 31 0 chr9 37942443 37942475 -104328969 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2078 101 0 14 chr9 37942481 37942757 -104328687 - AluSx SINE Alu -37 275 4 548 221 4 111 chr9 37942760 37942995 -104328449 - L1MC5 LINE L1 -435 7526 7317 373 254 37 37 chr9 37943005 37943139 -104328305 - L1ME3 LINE L1 -319 5802 5669 296 323 30 0 chr9 37943358 37943457 -104327987 - L1ME3 LINE L1 -2166 5642 5541 651 258 159 30 chr9 37943559 37943892 -104327552 - L2 LINE L2 -5 3308 2933 493 228 48 54 chr9 37943893 37944003 -104327441 + L1ME3A LINE L1 5995 6105 -65 2188 116 0 19 chr9 37944003 37944313 -104327131 + AluSx SINE Alu 1 304 -8 493 228 48 54 chr9 37944313 37944369 -104327075 + L1ME3A LINE L1 6105 6160 -10 430 332 31 0 chr9 37944387 37944643 -104326801 - L1ME3 LINE L1 -2199 3947 3684 21 0 0 0 chr9 37945742 37945763 -104325681 + AT_rich Low_complexity Low_complexity 1 21 0 2142 142 3 0 chr9 37946180 37946483 -104324961 + AluSx SINE Alu 1 304 -8 25 51 0 0 chr9 37946866 37946905 -104324539 + AT_rich Low_complexity Low_complexity 1 39 0 1577 160 28 28 chr9 37947388 37947670 -104323774 + AluJo SINE Alu 7 288 -24 2322 112 0 0 chr9 37947685 37947988 -104323456 + AluSx SINE Alu 1 303 -9 1684 159 28 14 chr9 37948799 37949082 -104322362 - AluJo SINE Alu -25 287 1 1587 148 111 7 chr9 37949177 37949447 -104321997 + AluJb SINE Alu 1 298 -14 917 130 35 59 chr9 37949747 37949916 -104321528 + L1PA15 LINE L1 6001 6165 0 439 242 65 17 chr9 37949918 37949933 -104321511 + L1MC/D LINE L1 5658 5671 -450 1858 176 3 0 chr9 37949933 37950229 -104321215 + AluJo SINE Alu 1 297 -15 439 242 65 17 chr9 37950229 37950248 -104321196 + L1MC/D LINE L1 5671 5688 -433 2093 98 0 54 chr9 37950248 37950564 -104320880 + AluSg SINE Alu 1 299 -11 439 242 65 17 chr9 37950564 37950695 -104320749 + L1MC/D LINE L1 5688 5824 -297 1259 139 106 14 chr9 37950705 37950784 -104320660 + MER30 DNA MER1_type 4 74 -156 2134 98 34 0 chr9 37950784 37951081 -104320363 + AluY SINE Alu 1 307 -4 1259 139 106 14 chr9 37951081 37951209 -104320235 + MER30 DNA MER1_type 74 230 0 774 211 0 8 chr9 37951508 37951636 -104319808 + FLAM_A SINE Alu 1 127 -6 822 196 26 74 chr9 37951803 37951992 -104319452 + LTR8A LTR ERV1 548 727 0 204 67 0 0 chr9 37952364 37952394 -104319050 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 6283 109 43 22 chr9 37952396 37954690 -104316754 - SVA Other Other -520 1383 3 306 220 30 0 chr9 37954706 37954806 -104316638 + GA-rich Low_complexity Low_complexity 1 103 0 1809 167 13 3 chr9 37955562 37955867 -104315577 + AluSx SINE Alu 1 308 -4 1392 148 0 5 chr9 37955876 37956092 -104315352 + MER4D LTR ERV1 10 224 -679 1432 160 12 4 chr9 37956118 37956362 -104315082 + MER4D LTR ERV1 441 686 -217 2564 146 7 36 chr9 37956369 37956787 -104314657 - LTR9 LTR ERV1 0 612 207 6863 127 10 5 chr9 37956854 37957840 -104313604 - HUERS-P3b LTR ERV1 -473 6945 5955 * 19973 157 44 53 chr9 37957837 37959588 -104311856 - HUERS-P3b LTR ERV1 -1597 5821 4056 2368 99 0 3 chr9 37959588 37959892 -104311552 - AluSp SINE Alu -10 303 1 19973 157 44 53 chr9 37959892 37960878 -104310566 - HUERS-P3b LTR ERV1 -3362 4056 3063 2147 105 27 0 chr9 37960878 37961173 -104310271 - AluSx SINE Alu -9 303 1 19973 157 44 53 chr9 37961173 37963288 -104308156 - HUERS-P3b LTR ERV1 -4355 3063 1008 2349 89 0 35 chr9 37963288 37963601 -104307843 + AluSg SINE Alu 1 302 -8 19973 157 44 53 chr9 37963601 37963627 -104307817 - HUERS-P3b LTR ERV1 -6410 1008 983 3925 102 58 7 chr9 37963727 37964317 -104307127 + L1MA3 LINE L1 5686 6305 0 341 246 49 0 chr9 37964419 37964541 -104306903 + L1M4 LINE L1 4931 5058 -1088 1268 129 0 0 chr9 37964832 37965003 -104306441 - AluJb SINE Alu -11 301 131 2450 90 3 0 chr9 37965419 37965731 -104305713 + AluSp SINE Alu 1 313 0 1015 262 145 0 chr9 37965773 37966021 -104305423 + AluJb SINE Alu 3 286 -16 24 32 0 0 chr9 37966138 37966169 -104305275 + AT_rich Low_complexity Low_complexity 1 31 0 1563 172 90 0 chr9 37966438 37966706 -104304738 - AluJb SINE Alu -20 292 1 241 193 0 202 chr9 37966713 37966780 -104304664 - L1M4 LINE L1 -1989 4157 4121 2494 56 13 3 chr9 37966780 37967084 -104304360 + AluY SINE Alu 2 308 -3 241 193 0 202 chr9 37967084 37967130 -104304314 - L1M4 LINE L1 -2025 4121 4067 255 231 224 0 chr9 37967369 37967487 -104303957 + MIR SINE MIR 108 256 -6 592 146 5 160 chr9 37967490 37967525 -104303919 + MER104 DNA MER2_type 3 42 -1856 2152 103 17 0 chr9 37967525 37967817 -104303627 - AluSx SINE Alu -6 306 10 592 146 5 160 chr9 37967817 37967913 -104303531 + MER104 DNA MER2_type 42 93 -1805 1809 153 48 3 chr9 37967913 37968207 -104303237 - AluJb SINE Alu -4 308 2 592 146 5 160 chr9 37968207 37968280 -104303164 + MER104 DNA MER2_type 93 176 -4 317 348 28 21 chr9 37968632 37968773 -104302671 + L2 LINE L2 3122 3263 -9 1235 133 9 44 chr9 37969127 37969352 -104302092 - AluSq SINE Alu -11 302 86 591 57 0 0 chr9 37969352 37969422 -104302022 + AluS SINE Alu 8 77 -236 381 313 70 0 chr9 37969496 37969624 -104301820 + L2 LINE L2 2920 3056 -257 2170 120 0 0 chr9 37969854 37970169 -104301275 - AluSx SINE Alu 0 312 1 2156 129 0 29 chr9 37970389 37970700 -104300744 - AluSx SINE Alu -10 302 1 1029 209 47 5 chr9 37971336 37971547 -104299897 + AluJo SINE Alu 1 220 -92 1551 149 100 0 chr9 37971549 37971655 -104299789 + AluY SINE Alu 1 95 -216 1882 62 0 9 chr9 37971655 37971882 -104299562 + AluY SINE Alu 70 294 -17 1455 131 4 18 chr9 37971882 37972110 -104299334 + AluSg/x SINE Alu 71 296 -14 1551 149 100 0 chr9 37972110 37972263 -104299181 + AluY SINE Alu 94 287 -24 247 370 22 7 chr9 37972505 37972640 -104298804 - MIR SINE MIR -121 141 5 2115 124 0 0 chr9 37972711 37973009 -104298435 + AluSx SINE Alu 1 298 -14 1471 188 36 10 chr9 37973950 37974253 -104297191 + L1MA4 LINE L1 5990 6300 0 841 129 0 61 chr9 37974261 37974408 -104297036 + FLAM_C SINE Alu 2 139 -4 243 281 148 39 chr9 37974431 37974559 -104296885 - L3b LINE CR1 -118 1465 1324 360 269 31 8 chr9 37974596 37974726 -104296718 + L1ME3A LINE L1 5757 5889 -281 1687 170 3 14 chr9 37974735 37975023 -104296421 + AluJo SINE Alu 5 289 -23 2192 113 3 0 chr9 37975033 37975324 -104296120 + AluSq SINE Alu 1 292 -21 1608 211 0 7 chr9 37975326 37975624 -104295820 + AluJb SINE Alu 1 296 -16 2200 116 3 0 chr9 37977951 37978245 -104293199 - AluSx SINE Alu -17 295 1 26 30 0 0 chr9 37980016 37980049 -104291395 + AT_rich Low_complexity Low_complexity 1 33 0 2705 216 43 52 chr9 37980248 37980730 -104290714 - L1MC4 LINE L1 -11 8031 7546 2109 116 14 0 chr9 37980730 37981024 -104290420 - AluSx SINE Alu -14 298 1 2705 216 43 52 chr9 37981024 37981181 -104290263 - L1MC4 LINE L1 -496 7546 7389 2601 49 0 0 chr9 37981181 37981488 -104289956 - AluY SINE Alu -4 307 1 2705 216 43 52 chr9 37981488 37981710 -104289734 - L1MC4 LINE L1 -653 7389 7177 1815 172 0 7 chr9 37981776 37982061 -104289383 + AluJb SINE Alu 1 283 -29 798 167 0 0 chr9 37982139 37982259 -104289185 - FLAM_C SINE Alu -13 120 1 2197 109 0 3 chr9 37982588 37982881 -104288563 + AluSq SINE Alu 1 292 -21 378 0 0 0 chr9 37992862 37992904 -104278540 + (TG)n Simple_repeat Simple_repeat 2 43 0 196 207 80 0 chr9 37993534 37993595 -104277849 - MIR SINE MIR -101 161 95 1706 156 49 3 chr9 37994623 37994911 -104276533 - AluJb SINE Alu -11 301 1 928 157 108 16 chr9 37995586 37995771 -104275673 - MER20 DNA MER1_type 0 219 18 1941 144 0 0 chr9 37996987 37997316 -104274128 + AluJb SINE Alu 6 334 0 1548 152 37 0 chr9 37998187 37998430 -104273014 - L1PB4 LINE L1 -1 6155 5904 809 119 0 70 chr9 37998449 37998514 -104272930 - L1PB4 LINE L1 -365 5791 5740 1639 164 25 47 chr9 37998514 37998831 -104272613 - AluJo SINE Alu -2 310 1 809 119 0 70 chr9 37998831 37998908 -104272536 - L1PB4 LINE L1 -416 5740 5659 286 139 0 0 chr9 37998921 37998964 -104272480 + Charlie7 DNA MER1_type 1666 1708 -904 3247 247 74 18 chr9 37999000 38000019 -104271425 - L1MC3 LINE L1 -2 8040 6977 1082 232 128 36 chr9 38000022 38000784 -104270660 + Charlie7 DNA MER1_type 1718 2584 -28 1871 158 0 32 chr9 38000840 38001150 -104270294 - AluJo SINE Alu -12 300 1 2170 116 0 44 chr9 38001158 38001476 -104269968 - AluSx SINE Alu -8 304 1 194 239 56 42 chr9 38001956 38002027 -104269417 - L2 LINE L2 -802 2512 2441 1068 219 176 28 chr9 38002076 38002468 -104268976 - L1MC3 LINE L1 -1793 6015 5566 844 271 47 94 chr9 38002476 38002753 -104268691 - MLT1I LTR MaLR -58 351 88 231 176 0 0 chr9 38002796 38002830 -104268614 + Alu SINE Alu 1 34 -269 1774 116 0 4 chr9 38002830 38003072 -104268372 + AluSg/x SINE Alu 72 312 0 1164 144 62 0 chr9 38003076 38003284 -104268160 - L1PA16 LINE L1 -23 6143 5923 2665 108 27 87 chr9 38003387 38003510 -104267934 - L1PA16 LINE L1 -121 6045 5916 1718 159 7 14 chr9 38003510 38003800 -104267644 - AluJo SINE Alu -8 304 17 2665 108 27 87 chr9 38003800 38003828 -104267616 - L1PA16 LINE L1 -250 5916 5605 612 231 42 145 chr9 38003828 38004353 -104267091 - L1MC4a LINE L1 -1886 5922 5452 291 308 29 29 chr9 38004419 38004523 -104266921 + L2 LINE L2 2927 3030 -283 445 258 181 40 chr9 38004874 38005074 -104266370 - L1ME4a LINE L1 -151 5970 5800 1831 161 40 0 chr9 38005074 38005372 -104266072 - AluJo SINE Alu -2 310 1 445 258 181 40 chr9 38005372 38005497 -104265947 - L1ME4a LINE L1 -321 5800 5599 669 218 0 41 chr9 38005509 38005656 -104265788 - FLAM_C SINE Alu -2 141 1 436 268 145 25 chr9 38005658 38005893 -104265551 - L1ME4a LINE L1 -503 5618 5356 31 76 0 0 chr9 38006821 38006887 -104264557 + AT_rich Low_complexity Low_complexity 1 66 0 289 213 4 209 chr9 38007023 38007253 -104264191 - L1MC/D LINE L1 -307 5814 5727 369 315 203 20 chr9 38007509 38007804 -104263640 + L2 LINE L2 328 676 -2638 724 274 54 17 chr9 38007816 38008057 -104263387 - MIR SINE MIR -1 261 12 516 225 17 69 chr9 38008137 38008310 -104263134 + MER103 DNA DNA 2 165 -1 658 327 153 8 chr9 38008390 38008861 -104262583 + L2 LINE L2 1866 2404 -910 185 174 0 87 chr9 38009011 38009057 -104262387 + L2 LINE L2 3271 3312 -1 1756 144 27 20 chr9 38009435 38010134 -104261310 - L1MB7 LINE L1 -19 6165 5341 1583 131 141 58 chr9 38010134 38010266 -104261178 - MER44D DNA MER2_type -1883 608 488 1502 173 58 25 chr9 38010266 38010544 -104260900 - AluJo SINE Alu -25 287 1 1583 131 141 58 chr9 38010544 38010723 -104260721 - MER44D DNA MER2_type -2003 488 1 1756 144 27 20 chr9 38010723 38010895 -104260549 - L1MB7 LINE L1 -843 5341 5172 2180 198 52 68 chr9 38011052 38011614 -104259830 - MLT2B3 LTR ERVL 0 554 2 2282 104 0 16 chr9 38011862 38012179 -104259265 - AluSx SINE Alu 0 312 1 927 65 24 36 chr9 38012454 38012622 -104258822 + (TTCC)n Simple_repeat Simple_repeat 1 166 0 2302 74 7 14 chr9 38012629 38012926 -104258518 - AluY SINE Alu -16 295 1 1898 149 16 117 chr9 38013004 38013347 -104258097 + MLT1B LTR MaLR 5 298 -92 1861 142 0 4 chr9 38013347 38013621 -104257823 - AluJo SINE Alu -16 296 24 1898 149 16 117 chr9 38013621 38013706 -104257738 + MLT1B LTR MaLR 298 390 0 1893 142 7 0 chr9 38015083 38015401 -104256043 - AluSx SINE Alu 0 321 2 1544 120 139 15 chr9 38015846 38016105 -104255339 - AluSg1 SINE Alu -18 291 1 278 243 27 27 chr9 38016577 38016651 -104254793 + L2 LINE L2 3010 3083 -189 825 200 104 42 chr9 38016746 38017006 -104254438 + L1ME3A LINE L1 5894 6169 -1 204 200 0 0 chr9 38017267 38017302 -104254142 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 366 287 181 32 chr9 38017361 38017549 -104253895 + MIR SINE MIR 40 255 -7 199 376 13 13 chr9 38017564 38017713 -104253731 + L2 LINE L2 2907 3055 -217 2355 112 0 0 chr9 38017975 38018288 -104253156 - AluSq SINE Alu 0 313 1 189 278 14 56 chr9 38018687 38018759 -104252685 + L2 LINE L2 3199 3267 -5 2379 72 3 10 chr9 38018777 38019084 -104252360 + AluSq SINE Alu 1 305 -8 279 320 130 28 chr9 38019701 38019717 -104251727 + L2 LINE L2 2049 2062 -1252 1578 159 23 55 chr9 38019717 38020025 -104251419 - AluJo SINE Alu -14 298 1 279 320 130 28 chr9 38020025 38020330 -104251114 + L2 LINE L2 2062 2403 -911 226 326 0 0 chr9 38020411 38020457 -104250987 + L2 LINE L2 3141 3186 -86 814 172 0 64 chr9 38020507 38020664 -104250780 - AluJb SINE Alu 0 312 166 1053 131 4 72 chr9 38020665 38020852 -104250592 - MLT1A1 LTR MaLR -188 177 1 246 317 34 91 chr9 38021130 38021338 -104250106 - L2 LINE L2 -562 2752 2557 271 186 51 0 chr9 38024761 38024820 -104246624 + MER117 DNA MER1_type 44 105 -92 206 338 13 0 chr9 38025630 38025707 -104245737 + GA-rich Low_complexity Low_complexity 4 81 0 22 0 0 0 chr9 38026314 38026336 -104245108 + AT_rich Low_complexity Low_complexity 1 22 0 285 75 0 0 chr9 38026917 38026957 -104244487 + (GA)n Simple_repeat Simple_repeat 1 40 0 561 187 91 91 chr9 38027107 38027294 -104244150 + MIR SINE MIR 20 206 -56 1558 169 63 3 chr9 38027779 38028081 -104243363 + MER33 DNA MER1_type 5 324 0 242 292 21 0 chr9 38028453 38028501 -104242943 + MIR SINE MIR 35 83 -125 255 276 41 102 chr9 38028518 38028616 -104242828 - L2 LINE L2 -25 3288 3197 207 0 0 0 chr9 38028916 38028939 -104242505 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 381 239 43 33 chr9 38028945 38029037 -104242407 - L2 LINE L2 -43 3229 3137 1805 175 67 94 chr9 38029210 38029689 -104241755 - MER31B LTR ERV1 0 466 1 1602 152 93 0 chr9 38030939 38031209 -104240235 - AluJo SINE Alu -4 308 14 988 67 8 0 chr9 38031978 38032097 -104239347 + AluSp SINE Alu 1 120 -193 226 0 0 56 chr9 38032097 38032133 -104239311 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 397 231 141 16 chr9 38032764 38032885 -104238559 - MIR3 SINE MIR -59 149 14 2281 93 7 0 chr9 38032949 38033238 -104238206 - AluSg SINE Alu -19 291 1 1585 238 92 43 chr9 38038742 38039397 -104232047 + L1MC4a LINE L1 5463 6149 -1659 184 349 86 33 chr9 38039596 38039748 -104231696 + L2 LINE L2 2889 3048 -224 207 179 26 0 chr9 38040408 38040447 -104230997 - MIR SINE MIR -25 237 198 478 273 77 7 chr9 38040460 38040603 -104230841 + L2 LINE L2 1843 1995 -1319 5021 140 48 14 chr9 38040603 38041595 -104229849 - L1MB7 LINE L1 0 6184 5158 22 0 0 0 chr9 38041601 38041623 -104229821 + AT_rich Low_complexity Low_complexity 1 22 0 897 152 8 0 chr9 38041628 38041760 -104229684 + FLAM_C SINE Alu 1 133 -10 3732 139 31 85 chr9 38041764 38042542 -104228902 - L1MB3 LINE L1 -3 6180 5445 1757 204 20 10 chr9 38042540 38042713 -104228731 - L1MB7 LINE L1 -974 5172 5002 * 2215 100 3 19 chr9 38042713 38043022 -104228422 - AluSq SINE Alu -9 304 1 1757 204 20 10 chr9 38043022 38043245 -104228199 - L1MB7 LINE L1 -1144 5002 4772 2594 259 84 33 chr9 38043245 38044310 -104227134 + L2 LINE L2 1990 3168 -145 540 295 152 5 chr9 38044314 38044524 -104226920 + MIR SINE MIR 21 261 -1 344 213 64 92 chr9 38044538 38044679 -104226765 + L2 LINE L2 3172 3308 -5 1401 147 6 97 chr9 38044682 38045001 -104226443 - AluJo SINE Alu -22 290 1 413 264 264 7 chr9 38046100 38046410 -104225034 - L2 LINE L2 -635 2679 2290 2321 62 31 0 chr9 38046550 38046842 -104224602 + AluY SINE Alu 1 301 -10 252 291 103 17 chr9 38049884 38050001 -104221443 + L2 LINE L2 3107 3233 -39 276 250 194 65 chr9 38050911 38051094 -104220350 + MIR SINE MIR 16 216 -46 392 214 22 11 chr9 38051194 38051283 -104220161 - L2 LINE L2 -8 3305 3216 480 312 64 6 chr9 38051346 38051503 -104219941 + MIR3 SINE MIR 23 188 -20 849 223 19 15 chr9 38051643 38051908 -104219536 - LTR37B LTR ERV1 -4 464 199 288 0 0 0 chr9 38052444 38052476 -104218968 + (TG)n Simple_repeat Simple_repeat 2 33 0 1698 166 24 0 chr9 38052873 38052999 -104218445 + AluSx SINE Alu 1 122 -190 396 0 0 0 chr9 38052999 38053043 -104218401 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1698 166 24 0 chr9 38053043 38053205 -104218239 + AluSx SINE Alu 122 296 -16 1994 90 10 14 chr9 38053397 38053686 -104217758 - AluY SINE Alu -4 307 20 464 292 15 15 chr9 38053982 38054112 -104217332 - L2 LINE L2 -4 3268 3139 1172 214 38 13 chr9 38054191 38054429 -104217015 + MIR SINE MIR 8 251 -11 2140 117 10 0 chr9 38054843 38055152 -104216292 - AluSx SINE Alu 0 312 1 1618 125 0 104 chr9 38055690 38056017 -104215427 - AluJb SINE Alu -19 293 1 2494 167 87 10 chr9 38056021 38056525 -104214919 - L1MB7 LINE L1 0 6184 5642 520 266 39 110 chr9 38056794 38057129 -104214315 + L1ME4a LINE L1 5798 6108 -13 531 167 10 0 chr9 38057360 38057462 -104213982 + L1MB8 LINE L1 6076 6178 0 1906 93 0 0 chr9 38057484 38057732 -104213712 + AluSx SINE Alu 1 248 -64 316 98 478 0 chr9 38057734 38057826 -104213618 - MER53 DNA DNA -53 136 1 185 280 80 60 chr9 38058686 38058786 -104212658 - L2 LINE L2 0 3313 3212 598 114 24 41 chr9 38058786 38058909 -104212535 - L1MA8 LINE L1 -2 6289 6169 985 261 63 44 chr9 38058912 38059322 -104212122 + L1PBa LINE L1 -15 402 -5802 6289 173 32 24 chr9 38059425 38061076 -104210368 + L1PBa LINE L1 4 1110 -5094 2149 95 0 20 chr9 38061076 38061380 -104210064 - AluSx SINE Alu -14 298 1 6289 173 32 24 chr9 38061380 38061936 -104209508 + L1PBa LINE L1 1110 1660 -4544 255 61 0 0 chr9 38062139 38062172 -104209272 + (TG)n Simple_repeat Simple_repeat 2 34 0 1704 89 20 0 chr9 38064869 38065117 -104206327 - L1MA3 LINE L1 0 6305 6053 4566 114 19 0 chr9 38065571 38066246 -104205198 - L1PA14 LINE L1 -1 6160 5473 240 307 50 30 chr9 38066870 38066971 -104204473 - MIR SINE MIR -59 149 47 945 102 31 0 chr9 38068777 38068986 -104202458 - FLAM_C SINE Alu 0 214 2 204 336 8 16 chr9 38068986 38069029 -104202415 + CT-rich Low_complexity Low_complexity 3 180 0 216 271 0 0 chr9 38069100 38069148 -104202296 + CT-rich Low_complexity Low_complexity 3 50 0 2066 99 0 7 chr9 38069497 38069803 -104201641 + AluSg SINE Alu 1 304 0 1780 153 13 0 chr9 38073206 38073507 -104197937 + AluSq SINE Alu 1 305 -8 1243 126 16 0 chr9 38073647 38073838 -104197606 + AluSg/x SINE Alu 110 303 -9 210 227 0 0 chr9 38075802 38075846 -104195598 + G-rich Low_complexity Low_complexity 1 44 0 1963 124 3 3 chr9 38077009 38077307 -104194137 + AluSx SINE Alu 7 304 -8 216 343 61 10 chr9 38077459 38077558 -104193886 - L2 LINE L2 -9 3304 3201 2212 93 0 3 chr9 38080400 38080701 -104190743 - AluSx SINE Alu -12 300 1 222 172 35 17 chr9 38085681 38085739 -104185705 + (TTG)n Simple_repeat Simple_repeat 2 60 0 304 377 24 18 chr9 38085788 38085955 -104185489 - L2 LINE L2 -208 3064 2897 2162 122 0 0 chr9 38085964 38086268 -104185176 + AluSx SINE Alu 1 304 -8 913 285 12 23 chr9 38086279 38086535 -104184909 + MIR SINE MIR 3 255 -7 255 335 226 14 chr9 38086465 38086823 -104184621 - L2 LINE L2 -357 2957 2524 * 530 310 85 10 chr9 38089856 38090056 -104181388 + MIR SINE MIR 46 260 -2 383 342 77 26 chr9 38090033 38090343 -104181101 - L2 LINE L2 -522 2792 2467 * 2219 23 0 4 chr9 38090385 38090642 -104180802 + L1PA3 LINE L1 5897 6152 -3 186 43 0 0 chr9 38090668 38090691 -104180753 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 469 248 107 7 chr9 38090725 38090874 -104180570 - L1ME1 LINE L1 -6 6160 5997 971 279 48 85 chr9 38090876 38091413 -104180031 - L2 LINE L2 -5 3267 2778 2053 105 24 0 chr9 38091413 38091709 -104179735 - AluSx SINE Alu -9 303 1 971 279 48 85 chr9 38091709 38092019 -104179425 - L2 LINE L2 -494 2778 2458 2029 122 0 0 chr9 38092152 38092448 -104178996 + AluSx SINE Alu 1 296 -16 200 206 0 0 chr9 38095437 38095471 -104175973 + polypyrimidine Low_complexity Low_complexity 2 35 0 24 0 0 0 chr9 38095775 38095799 -104175645 + AT_rich Low_complexity Low_complexity 1 24 0 2426 80 0 3 chr9 38100108 38100420 -104171024 - AluY SINE Alu 0 311 1 12127 180 17 17 chr9 38103149 38104291 -104167153 + L1PB3 LINE L1 2753 3893 -2261 2262 102 7 0 chr9 38104291 38104586 -104166858 + AluSg SINE Alu 1 297 -13 12127 180 17 17 chr9 38104586 38106839 -104164605 + L1PB3 LINE L1 3893 6148 -6 1710 123 33 60 chr9 38106848 38107181 -104164263 - L1MA8 LINE L1 -3 6288 5965 961 107 13 13 chr9 38107181 38107331 -104164113 + L1MA8 LINE L1 5805 5954 -346 877 151 8 0 chr9 38107568 38107694 -104163750 - FLAM_C SINE Alu -6 127 1 2116 118 64 22 chr9 38107930 38108287 -104163157 - THE1C LTR MaLR 0 375 4 1657 162 20 26 chr9 38109165 38109467 -104161977 - AluJo SINE Alu -12 300 1 502 266 56 0 chr9 38109563 38109706 -104161738 - MIR SINE MIR -49 213 63 529 273 42 6 chr9 38109714 38109879 -104161565 - MIR SINE MIR -3 259 89 342 215 15 0 chr9 38110053 38110118 -104161326 - MIR SINE MIR -187 75 10 24 67 0 0 chr9 38111173 38111218 -104160226 + AT_rich Low_complexity Low_complexity 1 45 0 5636 184 92 86 chr9 38112033 38113569 -104157875 + L1MB7 LINE L1 2184 3752 -2630 2074 118 24 0 chr9 38113569 38113865 -104157579 + AluSx SINE Alu 1 303 -9 5636 184 92 86 chr9 38113865 38114278 -104157166 + L1MB7 LINE L1 3752 4161 -2221 2093 170 36 44 chr9 38114273 38114472 -104156972 + L1MB7 LINE L1 5078 5277 -1105 * 1744 159 33 13 chr9 38114472 38114774 -104156670 - AluJo SINE Alu -2 310 3 2093 170 36 44 chr9 38114774 38115079 -104156365 + L1MB7 LINE L1 5277 5578 -804 274 140 0 0 chr9 38115068 38115118 -104156326 + L1PA16 LINE L1 5954 6003 -163 * 312 167 17 0 chr9 38115126 38115186 -104156258 + L1PA16 LINE L1 6097 6157 -9 4368 192 26 7 chr9 38115193 38116027 -104155417 + L1MB7 LINE L1 5555 6404 -16 425 322 63 42 chr9 38116453 38116692 -104154752 + L2 LINE L2 3028 3271 -1 246 348 70 35 chr9 38116861 38116976 -104154468 + L2 LINE L2 3144 3262 -10 21 0 0 0 chr9 38117219 38117240 -104154204 + AT_rich Low_complexity Low_complexity 1 21 0 857 290 92 27 chr9 38117733 38118181 -104153263 - L1MC4a LINE L1 -1923 5885 5409 315 298 10 0 chr9 38118151 38118255 -104153189 - L1P LINE L1 -782 5384 5280 * 536 198 175 63 chr9 38118376 38118628 -104152816 - L1MC4a LINE L1 -1823 5985 5706 21 0 0 0 chr9 38118709 38118730 -104152714 + AT_rich Low_complexity Low_complexity 1 21 0 1799 160 173 14 chr9 38118779 38119148 -104152296 - MSTA LTR MaLR 0 428 1 494 285 33 7 chr9 38119259 38119410 -104152034 + MIR SINE MIR 35 189 -73 216 359 7 69 chr9 38119430 38119575 -104151869 + L2 LINE L2 3137 3272 0 202 331 38 60 chr9 38120181 38120314 -104151130 - L3 LINE CR1 -2 1575 1446 1100 52 7 0 chr9 38120513 38120648 -104150796 - L1PA12 LINE L1 -7 6161 6026 650 181 113 0 chr9 38121101 38121234 -104150210 + MIR SINE MIR 115 262 0 282 309 7 43 chr9 38172805 38172982 -104098462 + CT-rich Low_complexity Low_complexity 6 293 0 237 286 38 19 chr9 38174289 38174394 -104097050 + MIR SINE MIR 107 213 -49 204 369 65 36 chr9 38174713 38174881 -104096563 - L2 LINE L2 -202 3070 2898 377 270 9 0 chr9 38174928 38175039 -104096405 - L1MEd LINE L1 -5301 818 707 2783 26 0 0 chr9 38175103 38175414 -104096030 + AluYa5 SINE Alu 1 311 0 352 301 49 0 chr9 38175774 38175897 -104095547 - L1MEd LINE L1 -5413 706 578 756 266 89 59 chr9 38175919 38176257 -104095187 - L1MEd LINE L1 -5599 520 173 2318 102 0 0 chr9 38177054 38177347 -104094097 + AluSg SINE Alu 1 293 -17 406 198 104 28 chr9 38177392 38177498 -104093946 + L1MC4a LINE L1 5806 5919 -1889 806 157 8 30 chr9 38177678 38177812 -104093632 - FLAM_C SINE Alu -1 132 2 234 0 0 0 chr9 38177814 38177840 -104093604 + (A)n Simple_repeat Simple_repeat 1 26 0 33 0 0 0 chr9 38179278 38179311 -104092133 + AT_rich Low_complexity Low_complexity 1 33 0 861 144 0 0 chr9 38179311 38179429 -104092015 - FLAM_C SINE Alu -15 118 1 2490 61 0 0 chr9 38179442 38179735 -104091709 - AluY SINE Alu 0 311 19 468 282 87 25 chr9 38180200 38180558 -104090886 + L1ME4a LINE L1 5739 6118 -3 198 0 0 0 chr9 38181215 38181237 -104090207 + (TGGA)n Simple_repeat Simple_repeat 2 23 0 745 176 17 0 chr9 38185882 38186001 -104085443 + FLAM_C SINE Alu 5 125 -18 17490 136 31 20 chr9 38186023 38188484 -104082960 + L1 LINE L1 18 2513 -5052 2488 84 0 0 chr9 38188484 38188792 -104082652 + AluY SINE Alu 1 308 -3 17490 136 31 20 chr9 38188792 38189105 -104082339 + L1 LINE L1 2513 2821 -4744 1675 157 187 49 chr9 38189118 38189589 -104081855 - LTR10A LTR ERV1 -61 548 13 12008 111 29 71 chr9 38189599 38192612 -104078832 - Harlequin LTR ERV1 -2 6647 2066 2665 46 0 0 chr9 38192612 38192919 -104078525 - AluY SINE Alu -4 307 1 12008 111 29 71 chr9 38192919 38194228 -104077216 - Harlequin LTR ERV1 -4583 2066 704 488 178 19 6 chr9 38194231 38194388 -104077056 + CT-rich Low_complexity Low_complexity 2 160 0 996 204 79 138 chr9 38194678 38195300 -104076144 - Harlequin LTR ERV1 -6064 585 1 1785 177 207 36 chr9 38195309 38195777 -104075667 - LTR10A LTR ERV1 -61 548 1 1344 136 18 5 chr9 38195777 38195997 -104075447 + L1 LINE L1 2818 3040 -4525 1243 87 0 0 chr9 38196013 38196185 -104075259 - L1M1 LINE L1 -865 5440 5269 902 168 6 6 chr9 38196181 38196348 -104075096 + L1M1 LINE L1 6516 6682 -883 * 816 180 14 0 chr9 38196745 38196884 -104074560 + FAM SINE Alu 28 168 -17 258 246 77 93 chr9 38196921 38197169 -104074275 + HAL1 LINE L1 941 1184 -1323 564 251 30 25 chr9 38197218 38197417 -104074027 + HAL1 LINE L1 1428 1627 -880 587 273 257 6 chr9 38197420 38197735 -104073709 + L2 LINE L2 2919 3312 -1 216 220 20 0 chr9 38197816 38197866 -104073578 + L2 LINE L2 3222 3272 0 567 239 87 48 chr9 38199085 38199374 -104072070 + L1MC5 LINE L1 7629 7928 -33 2402 187 36 49 chr9 38199631 38200195 -104071249 + L1ME1 LINE L1 5526 6257 -77 180 111 0 0 chr9 38200195 38200222 -104071222 + (TG)n Simple_repeat Simple_repeat 2 28 0 2402 187 36 49 chr9 38200222 38200260 -104071184 + L1ME1 LINE L1 6257 6294 -40 486 258 28 28 chr9 38200263 38200441 -104071003 + L1ME3A LINE L1 5993 6170 0 1354 245 35 43 chr9 38200529 38200717 -104070727 - MLT1J2 LTR MaLR -78 372 187 2323 92 0 19 chr9 38200717 38201031 -104070413 - AluSc SINE Alu -1 308 1 1354 245 35 43 chr9 38201031 38201217 -104070227 - MLT1J2 LTR MaLR -263 187 1 712 214 0 8 chr9 38202032 38202158 -104069286 - FLAM_C SINE Alu -17 126 2 372 297 230 0 chr9 38202396 38202605 -104068839 + MIR SINE MIR 6 262 0 192 253 77 66 chr9 38203184 38203275 -104068169 - L2 LINE L2 -25 3247 3156 180 225 25 0 chr9 38203763 38203803 -104067641 - L2 LINE L2 -6 3307 3267 320 346 39 0 chr9 38205088 38205192 -104066252 - L2 LINE L2 -11 3261 3154 1904 98 29 0 chr9 38205230 38205505 -104065939 + L1MA7 LINE L1 6009 6291 0 678 157 22 30 chr9 38205781 38205915 -104065529 + L1MB5 LINE L1 6034 6166 -8 2155 119 0 10 chr9 38205948 38206251 -104065193 + AluSq SINE Alu 1 300 -13 2942 150 50 29 chr9 38206796 38207350 -104064094 + L1MB4 LINE L1 5609 6174 -6 1379 253 73 62 chr9 38207672 38208488 -104062956 - L1ME4a LINE L1 -3 6118 5294 407 316 106 5 chr9 38208508 38208726 -104062718 - L1ME4a LINE L1 -893 5253 5014 867 178 6 0 chr9 38210383 38210540 -104060904 - AluSg/x SINE Alu -17 295 138 2285 116 0 0 chr9 38211272 38211574 -104059870 + AluSx SINE Alu 1 302 -10 223 253 32 11 chr9 38212301 38212396 -104059048 + A-rich Low_complexity Low_complexity 5 101 0 2165 127 0 0 chr9 38213067 38213351 -104058093 + AluSx SINE Alu 1 284 -28 272 294 193 0 chr9 38214329 38214438 -104057006 - L2 LINE L2 -4 3268 3139 1743 150 0 26 chr9 38214726 38215039 -104056405 - AluSx SINE Alu -7 305 1 288 148 0 0 chr9 38215087 38215148 -104056296 + (T)n Simple_repeat Simple_repeat 1 61 0 218 135 54 0 chr9 38215216 38215253 -104056191 + (CCCTG)n Simple_repeat Simple_repeat 2 40 0 228 196 0 0 chr9 38216343 38216394 -104055050 - L1MB5 LINE L1 -21 6153 6103 600 202 17 17 chr9 38216571 38216714 -104054730 + L1ME2 LINE L1 6030 6181 -3 2295 104 10 0 chr9 38216884 38217183 -104054261 - AluSx SINE Alu -5 307 6 4295 109 43 0 chr9 38217514 38218145 -104053299 - Tigger1 DNA MER2_type -1514 904 247 310 322 81 56 chr9 38218262 38218585 -104052859 + L2 LINE L2 2450 2780 -534 1566 120 132 8 chr9 38218588 38218854 -104052590 + AluSg SINE Alu 1 299 -11 248 160 20 0 chr9 38218854 38218904 -104052540 + LTR37A LTR ERV1 376 426 0 2337 77 21 0 chr9 38219758 38220045 -104051399 - AluSx SINE Alu -19 293 1 1175 175 86 77 chr9 38220075 38220413 -104051031 - MER50 LTR ERV1 0 734 394 3475 133 82 38 chr9 38220625 38221232 -104050212 - MER51A LTR ERV1 0 634 1 284 182 61 30 chr9 38221238 38221304 -104050140 - MER50 LTR ERV1 -657 77 10 1674 147 84 23 chr9 38221310 38221657 -104049787 + THE1C LTR MaLR 8 375 0 237 65 0 0 chr9 38221834 38221865 -104049579 + (CACCC)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr9 38222062 38222087 -104049357 + GC_rich Low_complexity Low_complexity 1 25 0 210 37 0 0 chr9 38222358 38222385 -104049059 + (CCG)n Simple_repeat Simple_repeat 3 29 0 258 298 48 12 chr9 38223102 38223186 -104048258 + L2 LINE L2 3154 3240 -32 299 161 259 0 chr9 38223196 38223277 -104048167 - MER51C LTR ERV1 -11 629 528 1899 106 6 77 chr9 38223910 38224222 -104047222 + AluSx SINE Alu 1 290 -22 401 115 0 26 chr9 38224409 38224499 -104046945 - MER53 DNA DNA -2 187 4 1713 152 55 7 chr9 38224923 38225213 -104046231 - L1MB3 LINE L1 -19 6164 5861 3456 89 20 0 chr9 38225228 38225678 -104045766 - L1PA14 LINE L1 0 6161 5703 2982 154 54 65 chr9 38225683 38225738 -104045706 - L1MB3 LINE L1 -308 5875 5821 2183 128 3 0 chr9 38225738 38226044 -104045400 - AluSx SINE Alu -5 307 1 2982 154 54 65 chr9 38226044 38226272 -104045172 - L1MB3 LINE L1 -362 5821 5592 207 0 0 0 chr9 38226272 38226295 -104045149 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2982 154 54 65 chr9 38226295 38226425 -104045019 - L1MB3 LINE L1 -591 5592 5462 2096 113 7 0 chr9 38226425 38226709 -104044735 + AluSx SINE Alu 1 286 -26 2982 154 54 65 chr9 38226709 38227134 -104044310 - L1MB3 LINE L1 -721 5462 5042 34 24 0 0 chr9 38227135 38227176 -104044268 + AT_rich Low_complexity Low_complexity 1 41 0 471 35 69 52 chr9 38227176 38227350 -104044094 + (TA)n Simple_repeat Simple_repeat 1 177 0 250 198 62 0 chr9 38227352 38227448 -104043996 + (CTATA)n Simple_repeat Simple_repeat 2 103 0 470 11 65 69 chr9 38227567 38227848 -104043596 + (TA)n Simple_repeat Simple_repeat 1 279 0 353 47 128 0 chr9 38227865 38228013 -104043431 + (TA)n Simple_repeat Simple_repeat 2 168 0 * 471 153 23 17 chr9 38227996 38228172 -104043272 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 537 119 36 28 chr9 38228199 38228734 -104042710 + (TTATA)n Simple_repeat Simple_repeat 1 539 0 3519 188 14 4 chr9 38228736 38229442 -104042002 - L1MB3 LINE L1 -1115 5031 4319 824 163 33 141 chr9 38231430 38231700 -104039744 - L1MB3 LINE L1 -1810 4336 4096 2018 120 0 60 chr9 38231703 38232020 -104039424 + AluSx SINE Alu 2 299 -13 2115 88 54 14 chr9 38232022 38232317 -104039127 + AluSc SINE Alu 1 307 -2 2054 143 13 0 chr9 38232450 38232751 -104038693 + AluSx SINE Alu 1 305 -7 1933 104 184 32 chr9 38233593 38233909 -104037535 - THE1B LTR MaLR 0 364 1 488 165 35 0 chr9 38233914 38233999 -104037445 - MLT1H LTR MaLR -8 541 454 248 306 69 0 chr9 38234020 38234092 -104037352 - MARNA DNA Mariner -417 169 93 1833 166 0 0 chr9 38234740 38235030 -104036414 + AluSx SINE Alu 1 290 -22 227 280 61 38 chr9 38235517 38235649 -104035795 + MER5A DNA MER1_type 53 187 -2 * 513 214 7 14 chr9 38235546 38235662 -104035782 - MER5A DNA MER1_type -71 118 4 730 276 103 15 chr9 38236044 38236240 -104035204 - L1ME4a LINE L1 0 6121 5944 4810 78 12 35 chr9 38236240 38236293 -104035151 - L1PB2 LINE L1 -8 6143 6090 2201 127 0 3 chr9 38236293 38236607 -104034837 - AluSq SINE Alu 0 313 1 4810 78 12 35 chr9 38236607 38237221 -104034223 - L1PB2 LINE L1 -61 6090 5490 2151 134 0 0 chr9 38237221 38237520 -104033924 - AluSx SINE Alu -13 299 1 4810 78 12 35 chr9 38237520 38237541 -104033903 - L1PB2 LINE L1 -661 5490 5470 730 276 103 15 chr9 38237541 38237799 -104033645 - L1ME4a LINE L1 -177 5944 5430 2272 118 3 10 chr9 38237897 38238210 -104033234 - AluSq SINE Alu -2 311 1 1537 132 34 48 chr9 38238223 38238518 -104032926 + L1MB1 LINE L1 5873 6163 -5 281 350 101 46 chr9 38238782 38239019 -104032425 + L2 LINE L2 2937 3186 -86 26 30 0 0 chr9 38239118 38239151 -104032293 + AT_rich Low_complexity Low_complexity 1 33 0 1947 201 59 0 chr9 38239191 38239598 -104031846 + L1M4 LINE L1 3878 4308 -1838 938 164 12 0 chr9 38239598 38239763 -104031681 + L1MB7 LINE L1 6018 6184 0 341 286 0 24 chr9 38239873 38239957 -104031487 + L2 LINE L2 3187 3268 -4 25 31 0 0 chr9 38240242 38240274 -104031170 + AT_rich Low_complexity Low_complexity 1 32 0 1893 162 3 19 chr9 38240275 38240584 -104030860 + AluJb SINE Alu 1 304 -8 417 331 7 15 chr9 38240850 38240986 -104030458 + L2 LINE L2 1097 1231 -2083 407 291 102 64 chr9 38241412 38241773 -104029671 + L2 LINE L2 1249 1623 -1691 455 182 5 44 chr9 38241900 38242013 -104029431 + MLT1L LTR MaLR 390 434 -33 651 254 44 19 chr9 38242300 38242505 -104028939 + HAL1 LINE L1 1285 1494 -1013 1038 163 132 11 chr9 38242513 38242703 -104028741 + AluJb SINE Alu 1 213 -99 477 263 86 23 chr9 38243215 38243390 -104028054 - MIR SINE MIR -12 250 65 21 36 0 0 chr9 38243533 38243561 -104027883 + AT_rich Low_complexity Low_complexity 1 28 0 886 118 0 16 chr9 38243673 38243800 -104027644 + FLAM_C SINE Alu 1 125 -18 342 297 148 0 chr9 38243970 38244098 -104027346 + L2 LINE L2 3161 3307 -6 214 391 128 8 chr9 38245073 38245206 -104026238 - L2 LINE L2 -8 3264 3116 2485 62 0 7 chr9 38245344 38245653 -104025791 + AluY SINE Alu 1 307 -4 271 324 0 29 chr9 38246210 38246315 -104025129 + MIR SINE MIR 20 121 -141 288 213 67 0 chr9 38246330 38246405 -104025039 - MER116 DNA Mariner 0 80 1 187 250 102 93 chr9 38246406 38246514 -104024930 + MIR SINE MIR 154 262 0 383 0 21 0 chr9 38246631 38246678 -104024766 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1998 124 0 0 chr9 38246729 38246988 -104024456 - AluSx SINE Alu -53 259 1 2094 136 14 0 chr9 38247291 38247585 -104023859 - AluJb SINE Alu -14 298 1 988 192 27 63 chr9 38248105 38248443 -104023001 - L1M LINE L1 -833 5313 5006 67 42 0 0 chr9 38248748 38248843 -104022601 + AT_rich Low_complexity Low_complexity 1 95 0 326 331 73 0 chr9 38248843 38248967 -104022477 - MIR3 SINE MIR -66 142 10 2293 94 0 3 chr9 38248990 38249276 -104022168 + AluSc SINE Alu 7 291 -18 380 271 200 0 chr9 38249703 38249873 -104021571 - MIR SINE MIR -12 250 47 1873 138 11 14 chr9 38250341 38250624 -104020820 - AluJo SINE Alu -13 299 18 258 229 0 0 chr9 38251108 38251178 -104020266 + (TATG)n Simple_repeat Simple_repeat 4 73 0 186 43 0 0 chr9 38252117 38252140 -104019304 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 2220 112 20 3 chr9 38253895 38254198 -104017246 - AluSq SINE Alu -5 308 1 4390 157 27 11 chr9 38254198 38255038 -104016406 + L1MB8 LINE L1 5324 6177 -1 2435 89 0 3 chr9 38255224 38255527 -104015917 - AluSx SINE Alu -10 302 1 1974 134 10 23 chr9 38255729 38256028 -104015416 - AluSx SINE Alu -17 295 1 2405 86 0 3 chr9 38256446 38256747 -104014697 - AluY SINE Alu -11 300 1 820 290 22 4 chr9 38256763 38256994 -104014450 - MIR SINE MIR -26 236 2 334 330 85 28 chr9 38256999 38257211 -104014233 + L2 LINE L2 2550 2773 -541 2168 104 0 13 chr9 38257217 38257515 -104013929 - AluY SINE Alu -17 294 1 929 148 21 151 chr9 38257515 38257845 -104013599 - L1M4 LINE L1 -812 5334 5047 2262 112 0 0 chr9 38257853 38258148 -104013296 - AluSq SINE Alu -18 295 1 2503 65 0 13 chr9 38258262 38258572 -104012872 - AluY SINE Alu -5 306 1 190 239 0 65 chr9 38258630 38258676 -104012768 - L2 LINE L2 -29 3243 3201 2308 96 20 3 chr9 38259263 38259566 -104011878 + AluSq SINE Alu 1 308 -5 186 43 0 0 chr9 38261321 38261344 -104010100 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 258 229 0 0 chr9 38262283 38262353 -104009091 + (CATA)n Simple_repeat Simple_repeat 4 73 0 1873 138 11 14 chr9 38262837 38263120 -104008324 + AluJo SINE Alu 18 299 -13 380 271 200 0 chr9 38263588 38263758 -104007686 + MIR SINE MIR 47 250 -12 2293 94 0 3 chr9 38264185 38264471 -104006973 - AluSc SINE Alu -18 291 7 326 331 73 0 chr9 38264494 38264618 -104006826 + MIR3 SINE MIR 10 142 -66 67 42 0 0 chr9 38264618 38264713 -104006731 + AT_rich Low_complexity Low_complexity 1 95 0 988 192 27 63 chr9 38265018 38265356 -104006088 + L1M4 LINE L1 5006 5330 -833 2094 136 14 0 chr9 38265876 38266170 -104005274 + AluJb SINE Alu 1 298 -14 226 288 62 0 chr9 38266195 38266341 -104005103 - L1ME4a LINE L1 -28 6093 5939 1239 83 0 0 chr9 38266356 38266501 -104004943 - AluSq/x SINE Alu -167 145 1 2393 158 11 34 chr9 38266511 38267040 -104004404 - L1MB8 LINE L1 -213 5965 5313 2277 121 0 0 chr9 38267040 38267338 -104004106 - AluSc SINE Alu -11 298 1 2393 158 11 34 chr9 38267338 38267606 -104003838 - L1MB8 LINE L1 -865 5313 5040 2069 134 3 13 chr9 38271480 38271785 -103999659 + AluSx SINE Alu 1 302 -10 238 287 205 31 chr9 38271793 38271988 -103999456 - L2 LINE L2 -785 2529 2301 465 48 0 0 chr9 38272026 38272088 -103999356 - AluY SINE Alu -11 300 239 385 360 80 34 chr9 38272123 38272509 -103998935 - L2 LINE L2 -17 3255 2852 2348 95 7 0 chr9 38272662 38272958 -103998486 + AluSq SINE Alu 1 298 -15 2246 124 0 0 chr9 38273077 38273375 -103998069 + AluSx SINE Alu 2 299 -13 2212 103 24 0 chr9 38273526 38273816 -103997628 + AluSx SINE Alu 1 297 -15 1990 123 17 24 chr9 38274510 38274803 -103996641 + AluJo SINE Alu 1 291 -21 2260 120 0 13 chr9 38274811 38275127 -103996317 + AluSx SINE Alu 1 312 0 546 323 236 6 chr9 38275130 38275591 -103995853 + L3 LINE CR1 709 1328 -249 890 247 189 42 chr9 38276062 38276463 -103994981 - L2 LINE L2 0 3313 2854 558 266 28 51 chr9 38276636 38276813 -103994631 + MIR SINE MIR 5 177 -85 331 194 69 14 chr9 38276944 38277016 -103994428 + L3 LINE CR1 1065 1140 -437 253 321 310 8 chr9 38277276 38277640 -103993804 - L2 LINE L2 -854 2460 1987 2206 105 7 16 chr9 38279275 38279581 -103991863 + AluSq SINE Alu 1 303 -10 247 247 140 47 chr9 38279827 38279977 -103991467 - L2 LINE L2 -1345 1969 1806 2357 103 0 0 chr9 38282185 38282485 -103988959 + AluSx SINE Alu 1 300 -12 220 333 167 0 chr9 38282562 38282682 -103988762 + MER91C DNA MER1_type 1 140 0 221 268 0 0 chr9 38283077 38283133 -103988311 + GA-rich Low_complexity Low_complexity 3 58 0 201 39 0 0 chr9 38284567 38284593 -103986851 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 28 0 0 0 chr9 38287276 38287304 -103984140 + AT_rich Low_complexity Low_complexity 1 28 0 519 224 56 8 chr9 38287386 38287511 -103983933 + FLAM_A SINE Alu 1 131 -2 350 201 144 58 chr9 38287955 38288094 -103983350 + MLT1L LTR MaLR 140 290 -325 384 244 200 22 chr9 38288176 38288401 -103983043 + MLT1L LTR MaLR 345 609 -6 2257 113 3 0 chr9 38288415 38288717 -103982727 + AluSg SINE Alu 1 303 -7 457 317 71 6 chr9 38288727 38288910 -103982534 + MIR SINE MIR 54 248 -14 2216 122 3 0 chr9 38289919 38290213 -103981231 + AluSx SINE Alu 1 295 -17 399 306 34 20 chr9 38290566 38290713 -103980731 - L1ME4a LINE L1 -248 5873 5725 981 119 0 0 chr9 38290713 38290839 -103980605 + FLAM_C SINE Alu 1 126 -17 324 0 0 0 chr9 38290887 38290923 -103980521 + (TA)n Simple_repeat Simple_repeat 2 37 0 420 276 122 17 chr9 38291041 38291222 -103980222 - L2 LINE L2 0 3313 3114 1353 248 78 27 chr9 38291621 38292072 -103979372 - MLT1J LTR MaLR -29 482 9 538 286 53 72 chr9 38292507 38292700 -103978744 + MIR SINE MIR 4 192 -70 2128 153 0 3 chr9 38292700 38293013 -103978431 + AluSx SINE Alu 1 312 0 538 286 53 72 chr9 38293013 38293081 -103978363 + MIR SINE MIR 192 260 -2 289 250 140 15 chr9 38293809 38293868 -103977576 + MER58C DNA MER1_type 63 113 -2307 741 193 18 0 chr9 38293868 38294039 -103977405 + L1MA7 LINE L1 6118 6291 0 289 250 140 15 chr9 38294039 38294115 -103977329 + MER58C DNA MER1_type 113 215 0 237 328 91 11 chr9 38294849 38295035 -103976409 - MIR SINE MIR -55 207 7 467 338 104 13 chr9 38296723 38296954 -103974490 - MIR SINE MIR 0 262 11 219 297 20 69 chr9 38298176 38298277 -103973167 - MIR3 SINE MIR -21 187 92 22 35 0 0 chr9 38300207 38300236 -103971208 + AT_rich Low_complexity Low_complexity 1 29 0 946 179 22 18 chr9 38300243 38300467 -103970977 + L1MD3 LINE L1 7771 7995 0 2001 137 3 0 chr9 38300517 38300824 -103970620 + AluJb SINE Alu 1 308 -4 1759 175 52 48 chr9 38300839 38301025 -103970419 + L1MC4 LINE L1 6973 7157 -885 1661 129 86 4 chr9 38301025 38301305 -103970139 + AluSx SINE Alu 1 303 -9 1759 175 52 48 chr9 38301305 38301557 -103969887 + L1MC4 LINE L1 7157 7413 -629 863 253 94 81 chr9 38301566 38301674 -103969770 - HAL1 LINE L1 -1553 954 849 2481 44 0 0 chr9 38301674 38301969 -103969475 + AluY SINE Alu 2 296 -15 863 253 94 81 chr9 38301969 38302477 -103968967 - HAL1 LINE L1 -1658 849 330 1821 98 4 0 chr9 38302501 38302755 -103968689 + AluSx SINE Alu 1 255 -57 970 151 16 54 chr9 38302786 38302971 -103968473 + AluJo SINE Alu 1 178 -134 479 266 188 0 chr9 38303398 38303552 -103967892 - MIR SINE MIR 0 262 80 815 212 30 0 chr9 38303619 38303784 -103967660 + FRAM SINE Alu 4 173 -3 1130 280 72 40 chr9 38303840 38304119 -103967325 - L1MEd LINE L1 -4880 1239 970 1440 192 10 26 chr9 38304119 38304282 -103967162 - AluJo SINE Alu -10 302 145 207 0 0 0 chr9 38304282 38304305 -103967139 + (CTTG)n Simple_repeat Simple_repeat 4 26 0 1440 192 10 26 chr9 38304305 38304448 -103966996 - AluJo SINE Alu -167 145 1 1130 280 72 40 chr9 38304448 38304851 -103966593 - L1MEd LINE L1 -5149 970 535 1724 160 10 10 chr9 38305089 38305382 -103966062 + AluJo SINE Alu 3 295 -17 1453 197 4 0 chr9 38305494 38305763 -103965681 - AluJo SINE Alu -16 296 27 689 180 0 43 chr9 38305787 38305926 -103965518 + FLAM_C SINE Alu 1 133 0 355 325 71 0 chr9 38305964 38306133 -103965311 - L1ME4a LINE L1 -251 5870 5690 850 249 63 89 chr9 38306198 38306548 -103964896 - MER102b DNA MER1_type 0 341 1 1705 173 3 0 chr9 38306934 38307234 -103964210 - AluJb SINE Alu -11 301 1 2118 112 3 6 chr9 38307609 38307922 -103963522 - AluSx SINE Alu 0 312 1 801 161 17 52 chr9 38308596 38308770 -103962674 - AluJb SINE Alu -144 168 1 300 213 88 150 chr9 38308985 38309134 -103962310 + L1M4 LINE L1 2722 2852 -3294 1103 160 0 17 chr9 38309134 38309309 -103962135 + FAM SINE Alu 1 172 -3 300 213 88 150 chr9 38309309 38309399 -103962045 + L1M4 LINE L1 2852 2946 -3200 507 269 19 58 chr9 38309446 38309479 -103961965 + MIR SINE MIR 7 40 -222 2309 85 10 0 chr9 38309479 38309784 -103961660 + AluY SINE Alu 2 309 -2 507 269 19 58 chr9 38309784 38309906 -103961538 + MIR SINE MIR 40 156 -106 607 298 126 59 chr9 38310754 38311005 -103960439 + L1M4 LINE L1 3051 3341 -2805 2394 79 0 0 chr9 38311005 38311308 -103960136 - AluSc SINE Alu -6 303 1 607 298 126 59 chr9 38311308 38311462 -103959982 + L1M4 LINE L1 3341 3483 -2663 1589 167 43 17 chr9 38311463 38311763 -103959681 + AluJo SINE Alu 1 308 -4 451 229 0 55 chr9 38312093 38312202 -103959242 + L2 LINE L2 3137 3239 -33 1903 149 17 0 chr9 38312258 38312554 -103958890 + AluJb SINE Alu 1 301 -11 265 294 91 52 chr9 38312560 38312791 -103958653 + L1M4 LINE L1 3798 4037 -2109 237 357 26 26 chr9 38312815 38312969 -103958475 + MER117 DNA MER1_type 2 155 -42 389 304 119 9 chr9 38313009 38313246 -103958198 + L1M4 LINE L1 4068 4335 -1811 2056 132 0 0 chr9 38313444 38313747 -103957697 + AluSx SINE Alu 1 303 -9 790 193 33 39 chr9 38313748 38313929 -103957515 + L1MA7 LINE L1 5942 6121 -170 689 210 45 13 chr9 38314022 38314179 -103957265 + L1MA10 LINE L1 6125 6286 -48 331 197 61 0 chr9 38314182 38314248 -103957196 - MER6 DNA MER2_type -2 863 794 377 180 16 0 chr9 38314268 38314329 -103957115 - MER6 DNA MER2_type -744 121 60 758 172 0 28 chr9 38314336 38314481 -103956963 + FLAM_C SINE Alu 2 142 -1 23 0 0 0 chr9 38314481 38314504 -103956940 + AT_rich Low_complexity Low_complexity 1 23 0 914 145 21 48 chr9 38314511 38314697 -103956747 + FRAM SINE Alu 1 176 0 295 197 61 0 chr9 38314698 38314764 -103956680 - MER6 DNA MER2_type -77 67 -2 259 340 14 75 chr9 38314914 38315015 -103956429 + L1MEd LINE L1 268 374 -5745 1995 121 3 10 chr9 38315015 38315313 -103956131 - AluSx SINE Alu -12 300 5 259 340 14 75 chr9 38315313 38315493 -103955951 + L1MEd LINE L1 374 532 -5587 2584 141 2 126 chr9 38315512 38316067 -103955377 + MER66B LTR ERV1 1 486 0 9038 220 98 90 chr9 38316067 38319687 -103951757 + MER66B-int LTR ERV1 1 3647 -3029 2003 69 69 7 chr9 38319687 38319975 -103951469 - L1MA1 LINE L1 0 6302 5997 1828 139 57 46 chr9 38319975 38320341 -103951103 + THE1C LTR MaLR 1 370 -5 9450 121 21 60 chr9 38320345 38321733 -103949711 + THE1C-int LTR MaLR 3 1319 -261 1769 172 3 0 chr9 38321733 38322030 -103949414 - AluSx SINE Alu -14 298 1 9450 121 21 60 chr9 38322030 38322283 -103949161 + THE1C-int LTR MaLR 1319 1580 0 1352 154 125 45 chr9 38322286 38322598 -103948846 + THE1C LTR MaLR 4 340 -35 216 0 0 0 chr9 38322601 38322625 -103948819 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 808 150 8 0 chr9 38322626 38322746 -103948698 - AluSg/x SINE Alu -34 276 156 3385 125 8 8 chr9 38322751 38323262 -103948182 + MER9 LTR ERVK 1 511 0 4134 87 15 46 chr9 38323265 38323737 -103947707 + HERVK9 LTR ERVK 18 468 -5448 2233 82 3 7 chr9 38323737 38324043 -103947401 + AluY SINE Alu 1 305 -6 4134 87 15 46 chr9 38324043 38324183 -103947261 + HERVK9 LTR ERVK 468 611 -5305 14915 85 9 7 chr9 38324183 38326122 -103945322 + HERVK9 LTR ERVK 1347 3290 -2626 4637 114 6 41 chr9 38326149 38326851 -103944593 + MER66-int LTR ERV1 5259 5935 -741 1135 135 78 26 chr9 38326851 38327044 -103944400 - MER51A LTR ERV1 0 634 432 2130 117 3 0 chr9 38327044 38327353 -103944091 + AluSq SINE Alu 1 310 -3 5029 119 92 7 chr9 38327353 38328298 -103943146 + L1P5 LINE L1 2181 3205 -3657 * 6230 163 16 56 chr9 38328292 38329198 -103942246 + L1P5 LINE L1 4600 5540 -1327 2066 109 0 7 chr9 38329198 38329492 -103941952 + AluSq SINE Alu 1 292 -21 6230 163 16 56 chr9 38329492 38330037 -103941407 + L1P5 LINE L1 5540 6105 -762 2106 107 10 7 chr9 38330037 38330346 -103941098 + AluSg SINE Alu 1 310 0 6230 163 16 56 chr9 38330346 38330548 -103940896 + L1P5 LINE L1 6105 6313 -554 2097 105 0 3 chr9 38330548 38330876 -103940568 + AluSq SINE Alu 1 327 0 6230 163 16 56 chr9 38330876 38331166 -103940278 + L1P5 LINE L1 6313 6493 -374 189 0 0 0 chr9 38331166 38331187 -103940257 + (TG)n Simple_repeat Simple_repeat 2 22 0 300 256 0 0 chr9 38331187 38331277 -103940167 + L1MC4 LINE L1 6614 6703 -1339 282 229 0 0 chr9 38331278 38331348 -103940096 + (TA)n Simple_repeat Simple_repeat 1 70 0 2513 107 3 16 chr9 38331348 38331723 -103939721 + L1PB1 LINE L1 5782 6151 0 307 211 11 33 chr9 38331806 38331896 -103939548 - L1MEc LINE L1 -4868 1528 1441 840 173 0 0 chr9 38331896 38332053 -103939391 + FLAM_C SINE Alu 1 157 0 1570 195 0 10 chr9 38332089 38332402 -103939042 - AluJo SINE Alu 0 312 3 22 35 0 0 chr9 38332441 38332470 -103938974 + AT_rich Low_complexity Low_complexity 1 29 0 4999 193 39 12 chr9 38332527 38333525 -103937919 + L1M4 LINE L1 1251 2275 -4290 1297 226 17 13 chr9 38333811 38333860 -103937584 + L1M4 LINE L1 2282 2329 -5237 2012 127 7 0 chr9 38333860 38334152 -103937292 + AluSq SINE Alu 1 294 -19 1297 226 17 13 chr9 38334152 38334477 -103936967 + L1M4 LINE L1 2329 2956 -4610 1444 195 54 86 chr9 38334478 38334779 -103936665 + L1M4 LINE L1 2798 3082 -4483 2166 102 3 0 chr9 38334779 38335074 -103936370 + AluSx SINE Alu 1 296 -16 1444 195 54 86 chr9 38335074 38335214 -103936230 + L1M4 LINE L1 3082 3225 -4340 288 247 67 95 chr9 38335335 38335607 -103935837 + MLT1H LTR MaLR 126 543 -47 1737 136 0 88 chr9 38335607 38335937 -103935507 - AluSx SINE Alu -11 301 1 288 247 67 95 chr9 38335937 38335969 -103935475 + MLT1H LTR MaLR 543 574 -16 241 263 160 13 chr9 38336011 38336055 -103935389 + L1M4 LINE L1 5440 5476 -2089 1601 170 3 31 chr9 38336055 38336349 -103935095 + AluJb SINE Alu 1 286 -26 241 263 160 13 chr9 38336349 38336460 -103934984 + L1M4 LINE L1 5476 5618 -1947 1336 248 33 0 chr9 38336495 38336798 -103934646 - L2 LINE L2 -570 2744 2432 964 117 7 0 chr9 38336809 38336954 -103934490 - AluSp/q SINE Alu -3 310 165 883 211 16 16 chr9 38337054 38337239 -103934205 + AluJb SINE Alu 116 300 -12 1310 237 58 20 chr9 38337244 38337298 -103934146 - L2 LINE L2 -962 2352 2301 2007 131 0 16 chr9 38337298 38337612 -103933832 + AluSx SINE Alu 1 309 -3 1310 237 58 20 chr9 38337612 38337903 -103933541 - L2 LINE L2 -1013 2301 1994 1715 173 0 0 chr9 38337983 38338278 -103933166 - AluJb SINE Alu -13 299 5 2710 187 78 116 chr9 38338366 38338600 -103932844 + L1MC5 LINE L1 6692 6933 -1028 8112 169 18 105 chr9 38338600 38340522 -103930922 + MER52A LTR ERV1 1 1755 0 2710 187 78 116 chr9 38340522 38340547 -103930897 + L1MC5 LINE L1 6933 6957 -1004 2137 93 0 0 chr9 38340547 38340825 -103930619 + AluSx SINE Alu 3 280 -32 189 0 0 0 chr9 38340825 38340846 -103930598 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1869 131 24 7 chr9 38340851 38341142 -103930302 + AluJb SINE Alu 1 296 -16 2710 187 78 116 chr9 38341142 38341434 -103930010 + L1MC5 LINE L1 6960 7262 -699 793 171 0 0 chr9 38341434 38341563 -103929881 - FLAM_A SINE Alu -4 129 1 2710 187 78 116 chr9 38341563 38341591 -103929853 + L1MC5 LINE L1 7262 7290 -671 1303 156 19 5 chr9 38341591 38341803 -103929641 + MER20 DNA MER1_type 1 215 -4 2710 187 78 116 chr9 38341803 38342084 -103929360 + L1MC5 LINE L1 7290 7504 -457 1596 139 21 14 chr9 38342084 38342371 -103929073 + AluJb SINE Alu 1 289 -23 2710 187 78 116 chr9 38342371 38342725 -103928719 + L1MC5 LINE L1 7504 7870 -91 1444 101 14 10 chr9 38342907 38343116 -103928328 - AluSq SINE Alu -23 290 81 188 0 0 69 chr9 38345147 38345176 -103926268 + (CCCG)n Simple_repeat Simple_repeat 4 30 0 21 82 0 0 chr9 38345269 38345318 -103926126 + GC_rich Low_complexity Low_complexity 1 49 0 40 49 0 0 chr9 38345522 38345583 -103925861 + GC_rich Low_complexity Low_complexity 1 61 0 604 182 94 69 chr9 38346333 38346536 -103924908 + MER3 DNA MER1_type 1 208 -1 2454 78 0 0 chr9 38350819 38351114 -103920330 + AluY SINE Alu 1 295 -16 2242 122 0 0 chr9 38352152 38352447 -103918997 + AluSx SINE Alu 1 295 -17 443 268 9 0 chr9 38352459 38352571 -103918873 + MER117 DNA MER1_type 14 126 -71 202 218 0 55 chr9 38353276 38353331 -103918113 + CT-rich Low_complexity Low_complexity 3 54 0 2052 117 0 51 chr9 38353571 38353887 -103917557 + AluSx SINE Alu 2 301 -11 219 217 11 98 chr9 38354026 38354118 -103917326 + L2 LINE L2 3229 3312 -1 472 276 30 0 chr9 38354135 38354269 -103917175 - L2 LINE L2 -587 2727 2590 231 358 57 26 chr9 38354495 38354569 -103916875 - L2 LINE L2 -2178 1136 1066 830 115 0 23 chr9 38354569 38354699 -103916745 + FLAM_C SINE Alu 2 128 -5 231 358 57 26 chr9 38354699 38354853 -103916591 - L2 LINE L2 -2248 1066 901 1036 164 0 0 chr9 38357638 38357797 -103913647 + AluJb SINE Alu 141 299 -13 1593 93 0 14 chr9 38360124 38360338 -103911106 + AluSq SINE Alu 91 301 -12 2016 116 62 0 chr9 38360399 38360691 -103910753 + AluSx SINE Alu 1 310 -2 1959 194 36 58 chr9 38361358 38361862 -103909582 + MLT1D LTR MaLR 1 493 -12 185 162 385 3 chr9 38361899 38362000 -103909444 + MIR SINE MIR 37 166 -66 403 315 144 88 chr9 38362011 38362362 -103909082 + L3 LINE CR1 410 740 -837 2089 118 21 0 chr9 38362362 38362668 -103908776 + AluSg SINE Alu 1 312 0 1723 194 6 13 chr9 38362674 38362988 -103908456 + AluJo SINE Alu 1 312 0 403 315 144 88 chr9 38362988 38363107 -103908337 + L3 LINE CR1 744 915 -662 269 234 104 13 chr9 38363128 38363205 -103908239 - MIR3 SINE MIR -27 181 98 2271 90 10 0 chr9 38363484 38363772 -103907672 + AluSx SINE Alu 1 291 -21 2093 90 60 0 chr9 38363797 38364114 -103907330 + AluSg SINE Alu 1 333 0 25 0 0 0 chr9 38364114 38364139 -103907305 + AT_rich Low_complexity Low_complexity 1 25 0 15139 101 43 9 chr9 38364467 38366707 -103904737 + Tigger1 DNA MER2_type 1 2165 -253 2092 79 57 11 chr9 38366707 38366987 -103904457 - AluY SINE Alu -18 293 1 2015 106 31 20 chr9 38366987 38367279 -103904165 - AluSx SINE Alu -17 295 1 15139 101 43 9 chr9 38367279 38367377 -103904067 + Tigger1 DNA MER2_type 2164 2418 0 1786 187 3 16 chr9 38367669 38367984 -103903460 - AluJo SINE Alu -1 311 1 662 167 0 45 chr9 38367984 38368116 -103903328 - FLAM_A SINE Alu -7 126 1 1285 97 0 12 chr9 38368160 38368325 -103903119 + AluY SINE Alu 1 163 -148 910 262 75 36 chr9 38368390 38368695 -103902749 + LTR16C LTR ERVL 5 321 -170 1998 138 7 13 chr9 38368720 38369025 -103902419 - AluJo SINE Alu -8 304 2 283 229 24 0 chr9 38369026 38369109 -103902335 - L1P5 LINE L1 -705 5446 5362 272 227 53 0 chr9 38369164 38369239 -103902205 - L1MC4a LINE L1 -1 7807 7729 209 238 0 0 chr9 38369284 38369326 -103902118 + (TA)n Simple_repeat Simple_repeat 2 43 0 1085 202 91 8 chr9 38369364 38369607 -103901837 - MLT2F LTR ERVL -59 604 342 2335 81 7 13 chr9 38369877 38370187 -103901257 - AluSx SINE Alu -4 308 1 578 219 19 45 chr9 38370476 38370631 -103900813 + MIR SINE MIR 6 156 -106 948 128 0 8 chr9 38370631 38370764 -103900680 + FLAM_C SINE Alu 1 132 -11 285 218 46 23 chr9 38370766 38370853 -103900591 + MIR SINE MIR 146 234 -28 460 319 46 15 chr9 38370912 38371367 -103900077 - L1MEc LINE L1 -1727 4488 4020 937 309 67 70 chr9 38371374 38371461 -103899983 - L1MEc LINE L1 -2483 3732 3646 2291 40 14 14 chr9 38371461 38371737 -103899707 + AluY SINE Alu 1 276 -35 251 0 59 0 chr9 38371742 38371776 -103899668 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 937 309 67 70 chr9 38371776 38372022 -103899422 - L1MEc LINE L1 -2573 3642 3397 2466 57 24 0 chr9 38372022 38372319 -103899125 - AluY SINE Alu -7 304 1 937 309 67 70 chr9 38372319 38372415 -103899029 - L1MEc LINE L1 -2818 3397 3302 2164 135 0 3 chr9 38372415 38372727 -103898717 - AluSx SINE Alu -1 311 1 937 309 67 70 chr9 38372727 38372770 -103898674 - L1MEc LINE L1 -2913 3302 3260 2135 125 0 35 chr9 38372770 38373089 -103898355 - AluJb SINE Alu -2 310 3 937 309 67 70 chr9 38373089 38373262 -103898182 - L1MEc LINE L1 -2955 3260 3093 408 280 6 19 chr9 38373357 38373373 -103898071 - L1MA10 LINE L1 0 6334 6319 748 239 22 0 chr9 38373373 38373553 -103897891 - L1ME1 LINE L1 -4 6162 5979 542 146 10 39 chr9 38373585 38373688 -103897756 - Tigger5 DNA MER2_type 0 2323 2224 345 143 0 18 chr9 38373682 38373738 -103897706 - Tigger5 DNA MER2_type -2268 55 1 * 492 320 68 37 chr9 38373755 38374049 -103897395 - L1MEc LINE L1 -3981 2415 2113 2461 78 0 0 chr9 38374207 38374502 -103896942 - AluSq SINE Alu -18 295 1 542 304 168 49 chr9 38374881 38375493 -103895951 - HAL1 LINE L1 -905 1602 918 981 142 75 47 chr9 38375928 38376140 -103895304 - MER20 DNA MER1_type -1 218 1 541 93 0 0 chr9 38376699 38376774 -103894670 + Alu SINE Alu 2 76 -233 792 152 8 18 chr9 38376848 38377016 -103894428 + LTR7 LTR ERV1 1 218 -232 839 171 70 21 chr9 38377185 38377372 -103894072 + LTR7 LTR ERV1 255 450 0 2043 199 40 24 chr9 38377372 38377824 -103893620 + HERVH LTR ERV1 1 459 -7254 3839 221 14 35 chr9 38377882 38379055 -103892389 + HERVH LTR ERV1 800 1807 -4847 21 71 0 0 chr9 38379055 38379097 -103892347 + AT_rich Low_complexity Low_complexity 1 42 0 387 258 57 75 chr9 38380169 38380328 -103891116 - MER21B LTR ERV1 -154 709 554 5623 55 42 24 chr9 38380334 38381100 -103890344 - LTR17 LTR ERV1 0 780 1 2353 55 0 0 chr9 38381100 38381392 -103890052 - HERV17 LTR ERV1 0 8626 8335 289 53 0 0 chr9 38381382 38381420 -103890024 - HERV17 LTR ERV1 -1078 7548 7511 * 11809 41 3 0 chr9 38381414 38382857 -103888587 - HERV17 LTR ERV1 -2607 6019 4572 2411 203 6 52 chr9 38382857 38383398 -103888046 + HERVH LTR ERV1 1600 2115 -5598 1941 127 3 31 chr9 38383725 38384036 -103887408 + AluSx SINE Alu 1 303 0 2284 99 6 19 chr9 38384094 38384406 -103887038 + AluSq SINE Alu 1 308 -5 318 316 121 22 chr9 38384468 38384699 -103886745 + L3 LINE CR1 1323 1576 -1 401 272 12 75 chr9 38384878 38384950 -103886494 - MLT1K LTR MaLR -3 585 510 2400 74 10 0 chr9 38384950 38385247 -103886197 + AluSp SINE Alu 1 300 -13 401 272 12 75 chr9 38385247 38385347 -103886097 - MLT1K LTR MaLR -78 510 424 2162 100 62 0 chr9 38385348 38385638 -103885806 + AluSx SINE Alu 1 308 -4 549 95 0 0 chr9 38385647 38385731 -103885713 + L1MA3 LINE L1 6222 6305 0 2320 91 10 10 chr9 38385908 38386215 -103885229 + AluSq SINE Alu 1 307 -6 342 0 0 0 chr9 38387698 38387736 -103883708 + (GA)n Simple_repeat Simple_repeat 1 38 0 356 277 141 48 chr9 38387879 38388357 -103883087 + L2 LINE L2 2524 3041 -231 725 230 136 25 chr9 38388391 38388626 -103882818 - MIR SINE MIR 0 262 2 409 121 0 0 chr9 38388778 38388836 -103882608 + AluJ/FLAM SINE Alu 1 58 -244 767 168 105 37 chr9 38391736 38391926 -103879518 + MER97b DNA MER1_type? 1 203 -850 1769 158 13 17 chr9 38391926 38392224 -103879220 - AluJo SINE Alu -15 297 1 383 267 17 9 chr9 38392546 38392662 -103878782 - AluSq/x SINE Alu -185 117 1 330 340 27 0 chr9 38392672 38392822 -103878622 + L1M4 LINE L1 2336 2489 -3657 330 207 60 35 chr9 38392846 38392962 -103878482 + Charlie8 DNA MER1_type 96 214 -2203 1451 103 54 188 chr9 38393088 38393218 -103878226 - MER1B DNA MER1_type -2373 337 191 2006 135 10 22 chr9 38393218 38393529 -103877915 - AluSx SINE Alu -5 307 1 1451 103 54 188 chr9 38393529 38393787 -103877657 - MER1B DNA MER1_type -2519 191 1 1020 148 0 0 chr9 38393878 38394071 -103877373 - AluSg/x SINE Alu 0 326 134 2161 121 3 0 chr9 38394071 38394368 -103877076 - AluSq SINE Alu -6 307 10 242 301 155 39 chr9 38394379 38394585 -103876859 - L2 LINE L2 0 3272 3043 446 237 0 68 chr9 38394763 38394881 -103876563 - L2 LINE L2 -5 3267 3158 2080 133 6 15 chr9 38394895 38395234 -103876210 + MER1B DNA MER1_type 1 336 -1 578 149 79 0 chr9 38395459 38395573 -103875871 + FLAM_A SINE Alu 7 129 -13 391 263 131 0 chr9 38395585 38395745 -103875699 - MIR SINE MIR -38 224 44 1574 106 21 8 chr9 38395929 38396166 -103875278 + AluJb SINE Alu 1 240 -72 244 289 0 72 chr9 38397264 38397361 -103874083 + MIR SINE MIR 121 210 -52 285 230 92 23 chr9 38397410 38397497 -103873947 - MIR SINE MIR -147 115 23 641 311 241 30 chr9 38397642 38398274 -103873170 + L3 LINE CR1 612 1437 -140 2397 98 0 0 chr9 38398274 38398570 -103872874 - AluSx SINE Alu -16 296 1 641 311 241 30 chr9 38398570 38398708 -103872736 + L3 LINE CR1 1437 1545 -32 820 146 0 49 chr9 38400094 38400238 -103871206 - FLAM_C SINE Alu -5 138 2 337 279 109 24 chr9 38402960 38403125 -103868319 - MIR SINE MIR -60 202 24 183 80 0 0 chr9 38403795 38403820 -103867624 + (CAGGG)n Simple_repeat Simple_repeat 1 25 0 346 233 97 34 chr9 38404014 38404190 -103867254 + L1ME4a LINE L1 5760 5946 -175 523 155 0 0 chr9 38404227 38404311 -103867133 + AluJ/FLAM SINE Alu 2 85 -227 23 0 0 0 chr9 38404322 38404345 -103867099 + AT_rich Low_complexity Low_complexity 1 23 0 205 83 0 28 chr9 38404450 38404486 -103866958 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 216 274 48 71 chr9 38404533 38404617 -103866827 - L2 LINE L2 -9 3304 3223 268 176 118 35 chr9 38404617 38404702 -103866742 + L1ME4a LINE L1 6030 6121 0 631 64 0 0 chr9 38405545 38405623 -103865821 + AluSp SINE Alu 2 79 -234 1711 74 5 0 chr9 38405661 38405878 -103865566 + AluSp SINE Alu 81 298 -15 624 328 13 69 chr9 38405879 38406358 -103865086 - L2 LINE L2 -25 3247 2796 638 256 72 22 chr9 38406373 38406596 -103864848 - MLT1L LTR MaLR -24 591 358 1026 252 189 36 chr9 38406706 38407257 -103864187 - L2 LINE L2 -492 2822 2188 1627 213 158 20 chr9 38407365 38407807 -103863637 + MLT1D LTR MaLR 3 505 0 1734 140 9 62 chr9 38408607 38408928 -103862516 + AluJo SINE Alu 1 304 -8 197 337 43 22 chr9 38408978 38409070 -103862374 + L2 LINE L2 3199 3292 -21 2411 149 26 96 chr9 38409172 38409198 -103862246 + Charlie1 DNA MER1_type 1583 1609 -1152 2286 80 0 20 chr9 38409198 38409500 -103861944 - AluSg SINE Alu -14 296 1 2411 149 26 96 chr9 38409500 38409970 -103861474 + Charlie1 DNA MER1_type 1609 2026 -735 2123 98 0 17 chr9 38409970 38410293 -103861151 - AluSx SINE Alu 0 312 1 2411 149 26 96 chr9 38410293 38410439 -103861005 + Charlie1 DNA MER1_type 2026 2181 -580 2186 93 0 20 chr9 38410454 38410756 -103860688 - AluSx SINE Alu -14 298 3 1852 150 0 29 chr9 38410763 38411077 -103860367 - AluJb SINE Alu -5 307 3 464 202 0 0 chr9 38411156 38411245 -103860199 + AluS SINE Alu 224 312 0 1461 136 22 0 chr9 38411376 38411604 -103859840 - Tigger3(Golem) DNA MER2_type 0 3029 2797 1536 132 4 43 chr9 38411609 38411889 -103859555 - AluJo SINE Alu -30 282 14 206 299 45 0 chr9 38412197 38412264 -103859180 - L2 LINE L2 -218 3054 2985 1518 74 9 32 chr9 38412277 38412494 -103858950 - AluY SINE Alu -15 296 85 2312 92 0 0 chr9 38412494 38412798 -103858646 - AluSx SINE Alu -7 305 1 317 310 63 25 chr9 38413090 38413248 -103858196 + L2 LINE L2 3141 3304 -9 1502 170 108 0 chr9 38413259 38413536 -103857908 + 7SLRNA srpRNA srpRNA 1 307 -13 204 179 0 0 chr9 38413554 38413568 -103857876 + A-rich Low_complexity Low_complexity 5 18 -25 2122 103 0 3 chr9 38413568 38413860 -103857584 + AluSx SINE Alu 21 311 -1 204 179 0 0 chr9 38413860 38413884 -103857560 + A-rich Low_complexity Low_complexity 17 43 0 207 315 68 62 chr9 38413921 38414067 -103857377 + L2 LINE L2 2625 2771 -543 390 283 14 55 chr9 38414186 38414243 -103857201 + L2 LINE L2 3127 3185 -87 1684 168 0 7 chr9 38414243 38414523 -103856921 - AluJb SINE Alu 0 312 35 390 283 14 55 chr9 38414523 38414610 -103856834 + L2 LINE L2 3185 3265 -7 203 344 6 28 chr9 38416027 38416207 -103855237 + GA-rich Low_complexity Low_complexity 3 178 0 2353 75 0 10 chr9 38416472 38416777 -103854667 - AluSp SINE Alu -11 302 1 245 206 32 16 chr9 38416890 38416953 -103854491 + Charlie8 DNA MER1_type 1360 1423 -994 243 233 117 29 chr9 38418069 38418172 -103853272 - L2 LINE L2 -93 3179 3068 1926 107 33 13 chr9 38418336 38418636 -103852808 - AluSx SINE Alu -6 306 1 2453 52 0 16 chr9 38419549 38419857 -103851587 + AluY SINE Alu 2 304 -7 802 95 0 0 chr9 38420197 38420302 -103851142 - AluSg SINE Alu -179 131 27 288 165 0 35 chr9 38420392 38420477 -103850967 + CT-rich Low_complexity Low_complexity 4 85 0 1388 140 8 47 chr9 38420913 38421170 -103850274 + AluJo SINE Alu 1 247 -65 945 208 0 0 chr9 38421857 38422011 -103849433 - FRAM SINE Alu -12 154 1 34 0 0 0 chr9 38422613 38422647 -103848797 + AT_rich Low_complexity Low_complexity 1 34 0 809 185 129 31 chr9 38422732 38423024 -103848420 - MLT1D LTR MaLR -63 404 1 254 71 0 24 chr9 38423071 38423113 -103848331 + (TG)n Simple_repeat Simple_repeat 2 42 0 262 327 0 10 chr9 38424755 38424859 -103846585 + GA-rich Low_complexity Low_complexity 1 103 0 626 223 102 12 chr9 38425378 38425544 -103845900 + MER5A DNA MER1_type 9 189 0 2205 98 3 0 chr9 38427454 38427751 -103843693 + AluSq SINE Alu 1 298 -15 693 183 48 0 chr9 38428014 38428140 -103843304 + FLAM_A SINE Alu 2 133 0 636 261 31 17 chr9 38428431 38428609 -103842835 + MIR SINE MIR 4 181 -62 294 308 8 42 chr9 38428673 38428793 -103842651 + MER5A DNA MER1_type 68 183 -6 22 35 0 0 chr9 38431517 38431546 -103839898 + GC_rich Low_complexity Low_complexity 1 29 0 231 222 19 56 chr9 38432220 38432328 -103839116 + (CCCCG)n Simple_repeat Simple_repeat 1 104 0 * 232 224 40 0 chr9 38432254 38432330 -103839114 + C-rich Low_complexity Low_complexity 1 79 0 219 247 24 47 chr9 38432599 38432684 -103838760 + G-rich Low_complexity Low_complexity 1 83 0 739 158 0 8 chr9 38433195 38433315 -103838129 - FLAM_A SINE Alu -12 121 3 581 286 66 96 chr9 38433326 38433839 -103837605 + L2 LINE L2 2766 3268 -4 1429 171 35 43 chr9 38433893 38434291 -103837153 - Charlie1 DNA MER1_type -16 2745 2351 2139 96 7 0 chr9 38434292 38434601 -103836843 - AluSx SINE Alu 0 311 1 1211 139 0 0 chr9 38434604 38434791 -103836653 - AluSg/x SINE Alu 0 310 124 2237 100 0 7 chr9 38434791 38435101 -103836343 - AluY SINE Alu -3 308 1 1571 178 0 30 chr9 38435108 38435412 -103836032 - AluJb SINE Alu -17 295 1 2778 150 26 89 chr9 38435412 38435506 -103835938 - Charlie1 DNA MER1_type -480 2281 2183 2202 92 0 20 chr9 38435506 38435810 -103835634 + AluSx SINE Alu 1 298 -14 2778 150 26 89 chr9 38435810 38435971 -103835473 - Charlie1 DNA MER1_type -578 2183 2013 2123 98 0 17 chr9 38435971 38436294 -103835150 + AluSx SINE Alu 1 312 0 2778 150 26 89 chr9 38436294 38436763 -103834681 - Charlie1 DNA MER1_type -748 2013 1602 2277 80 0 20 chr9 38436764 38437065 -103834379 + AluSg SINE Alu 1 295 -15 991 117 34 50 chr9 38437065 38437244 -103834200 - AluSg/x SINE Alu -3 309 134 579 187 19 0 chr9 38437244 38437351 -103834093 - Charlie1 DNA MER1_type -2652 109 1 239 175 159 0 chr9 38437474 38437537 -103833907 + L3 LINE CR1 1432 1504 -73 212 109 130 0 chr9 38437657 38437703 -103833741 + L2 LINE L2 3221 3272 0 836 179 0 0 chr9 38437772 38437917 -103833527 - FRAM SINE Alu -23 153 9 210 322 17 35 chr9 38441158 38441332 -103830112 + GA-rich Low_complexity Low_complexity 5 175 0 582 303 212 0 chr9 38442329 38442669 -103828775 - L2 LINE L2 -5 3308 2897 822 278 63 59 chr9 38442739 38442789 -103828655 - L2 LINE L2 -565 2749 2701 1484 169 26 11 chr9 38442789 38443056 -103828388 - AluJo SINE Alu -39 273 3 822 278 63 59 chr9 38443056 38443494 -103827950 - L2 LINE L2 -613 2701 2259 190 216 0 0 chr9 38443735 38443772 -103827672 - L2 LINE L2 -996 2318 2282 2257 77 0 0 chr9 38443966 38444253 -103827191 - AluSg SINE Alu 0 310 24 247 294 75 27 chr9 38444298 38444444 -103827000 - L2 LINE L2 -1303 2011 1859 1693 118 16 0 chr9 38444509 38444754 -103826690 + AluSx SINE Alu 6 254 -58 270 257 156 0 chr9 38450218 38450327 -103821117 - MER112 DNA MER1_type -131 129 4 1490 70 0 0 chr9 38450597 38450821 -103820623 + AluSc SINE Alu 98 321 0 2600 32 3 0 chr9 38451092 38451402 -103820042 + AluY SINE Alu 1 311 0 2297 73 3 38 chr9 38451416 38451733 -103819711 + AluY SINE Alu 1 306 -5 2140 94 0 19 chr9 38453849 38454156 -103817288 + AluSc SINE Alu 1 301 -8 309 298 122 16 chr9 38454868 38454887 -103816557 + HAL1 LINE L1 1069 1085 -1422 2101 125 7 0 chr9 38454887 38455191 -103816253 + AluSx SINE Alu 1 306 -6 309 298 122 16 chr9 38455191 38455359 -103816085 + HAL1 LINE L1 1085 1276 -1231 1692 95 70 11 chr9 38457281 38457554 -103813890 + L1MA5A LINE L1 6008 6296 -1 953 143 0 0 chr9 38457559 38457692 -103813752 + FLAM_C SINE Alu 1 133 0 199 289 44 22 chr9 38458425 38458515 -103812929 - MIR SINE MIR -98 164 73 731 134 18 0 chr9 38462105 38462217 -103809227 - AluSg/x SINE Alu -4 306 193 186 316 125 33 chr9 38464049 38464201 -103807243 - MIR SINE MIR -62 200 35 2293 80 3 7 chr9 38464587 38464888 -103806556 - AluSp SINE Alu -13 300 1 457 248 56 8 chr9 38465878 38466003 -103805441 + L2 LINE L2 3159 3289 -24 2246 76 14 0 chr9 38467405 38467693 -103803751 - AluY SINE Alu -19 292 1 185 311 95 14 chr9 38467983 38468057 -103803387 + MIR3 SINE MIR 97 176 -32 215 364 62 49 chr9 38470240 38470465 -103800979 - L2 LINE L2 -1 3271 3044 479 252 193 18 chr9 38470535 38470753 -103800691 - MIR SINE MIR 0 262 7 256 329 75 30 chr9 38470783 38471078 -103800366 - L2 LINE L2 -347 2967 2660 211 154 111 51 chr9 38473490 38473607 -103797837 + (CCCGG)n Simple_repeat Simple_repeat 4 127 0 583 316 178 46 chr9 38475031 38475135 -103796309 + L3 LINE CR1 634 723 -854 566 220 113 6 chr9 38475135 38475294 -103796150 - MER69A DNA AcHobo 0 177 2 583 316 178 46 chr9 38475294 38475473 -103795971 + L3 LINE CR1 723 877 -700 1540 137 16 23 chr9 38475473 38475729 -103795715 - AluJb SINE Alu -24 288 35 583 316 178 46 chr9 38475729 38476079 -103795365 + L3 LINE CR1 877 1179 -398 1756 179 3 0 chr9 38476079 38476375 -103795069 - AluJb SINE Alu -12 300 4 583 316 178 46 chr9 38476375 38476573 -103794871 + L3 LINE CR1 1179 1577 0 210 44 44 22 chr9 38477312 38477357 -103794087 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 231 269 30 15 chr9 38479005 38479072 -103792372 - L2 LINE L2 -82 3190 3123 1876 68 4 20 chr9 38482827 38483077 -103788367 - AluY SINE Alu -60 251 6 349 334 133 34 chr9 38483520 38484120 -103787324 + L2 LINE L2 2542 3207 -65 1442 176 149 7 chr9 38484352 38484653 -103786791 - MER2 DNA MER2_type 0 344 1 879 245 30 9 chr9 38484686 38484919 -103786525 + MIR SINE MIR 10 247 -15 223 289 84 12 chr9 38485598 38485681 -103785763 + L2 LINE L2 3180 3268 -4 2193 101 0 9 chr9 38486593 38486909 -103784535 - AluSq SINE Alu 0 313 1 23 0 0 0 chr9 38487030 38487053 -103784391 + AT_rich Low_complexity Low_complexity 1 23 0 311 258 83 30 chr9 38487351 38487483 -103783961 + MIR SINE MIR 70 208 -54 2198 103 7 7 chr9 38487791 38488101 -103783343 + AluSq SINE Alu 1 310 -3 238 250 0 0 chr9 38488305 38488353 -103783091 + L2 LINE L2 3265 3312 -1 216 0 0 0 chr9 38490796 38490820 -103780624 + (CCG)n Simple_repeat Simple_repeat 3 26 0 815 243 80 0 chr9 38496576 38496802 -103774642 + MIR SINE MIR 18 261 -1 2296 111 3 46 chr9 38496947 38497298 -103774146 - MER1B DNA MER1_type 0 337 2 27 0 0 0 chr9 38499390 38499417 -103772027 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chr9 38500061 38500085 -103771359 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2051 127 10 16 chr9 38500767 38501081 -103770363 + AluSx SINE Alu 1 312 0 201 268 0 0 chr9 38501383 38501439 -103770005 + T-rich Low_complexity Low_complexity 1 56 0 870 174 139 0 chr9 38501784 38501956 -103769488 - MER20 DNA MER1_type -1 218 23 459 279 78 0 chr9 38502062 38502191 -103769253 + MER5A DNA MER1_type 7 145 -44 1723 163 3 23 chr9 38502874 38503204 -103768240 + AluJb SINE Alu 1 312 0 1468 106 62 13 chr9 38503356 38503582 -103767862 + AluSx SINE Alu 1 237 -75 559 303 86 31 chr9 38503679 38503969 -103767475 + L3 LINE CR1 1214 1519 -58 440 341 29 0 chr9 38504388 38504526 -103766918 - MIR3 SINE MIR -64 144 3 2306 112 0 0 chr9 38505084 38505396 -103766048 + AluSx SINE Alu 1 312 0 800 177 7 0 chr9 38505491 38505632 -103765812 + AluJb SINE Alu 171 312 0 3107 186 24 89 chr9 38505981 38506328 -103765116 - L1ME2 LINE L1 0 6164 5796 1943 134 10 0 chr9 38506328 38506626 -103764818 + AluSx SINE Alu 1 301 -11 3107 186 24 89 chr9 38506626 38506864 -103764580 - L1ME2 LINE L1 -368 5796 5544 1889 157 0 0 chr9 38506864 38507157 -103764287 + AluJb SINE Alu 6 298 -14 3107 186 24 89 chr9 38507157 38507310 -103764134 - L1ME2 LINE L1 -620 5544 5383 2216 92 16 0 chr9 38507310 38507614 -103763830 - AluY SINE Alu -2 309 1 3107 186 24 89 chr9 38507614 38508144 -103763300 - L1ME2 LINE L1 -781 5383 4990 406 257 114 0 chr9 38508320 38508425 -103763019 - L2 LINE L2 -15 3298 3182 189 0 0 0 chr9 38508769 38508790 -103762654 + (T)n Simple_repeat Simple_repeat 1 21 0 300 297 40 30 chr9 38509144 38509245 -103762199 - MER117 DNA MER1_type -8 189 88 1846 116 11 4 chr9 38509318 38509586 -103761858 - AluSx SINE Alu -42 270 1 1443 136 163 0 chr9 38509589 38509847 -103761597 - AluJb SINE Alu -12 300 1 537 287 187 43 chr9 38510869 38511358 -103760086 - L2 LINE L2 -2 3270 2721 22 35 0 0 chr9 38511372 38511401 -103760043 + AT_rich Low_complexity Low_complexity 1 29 0 1072 317 103 11 chr9 38511503 38511978 -103759466 - L2 LINE L2 -621 2693 2146 423 0 0 0 chr9 38511978 38512025 -103759419 + (GA)n Simple_repeat Simple_repeat 1 47 0 1072 317 103 11 chr9 38512025 38512168 -103759276 - L2 LINE L2 -1168 2146 2018 398 309 65 57 chr9 38513646 38513982 -103757462 - L2 LINE L2 -1082 2232 1894 2424 47 7 0 chr9 38513997 38514295 -103757149 + AluY SINE Alu 1 300 -11 185 54 0 81 chr9 38514310 38514347 -103757097 - L2 LINE L2 -8 3305 3272 1842 147 10 16 chr9 38514592 38514906 -103756538 + AluJb SINE Alu 1 312 0 2176 109 3 0 chr9 38514984 38515287 -103756157 - AluSx SINE Alu -8 304 1 43 0 0 0 chr9 38515296 38515339 -103756105 + AT_rich Low_complexity Low_complexity 1 43 0 790 132 18 0 chr9 38515339 38515453 -103755991 - FLAM_C SINE Alu -26 117 2 2384 50 10 0 chr9 38515931 38516229 -103755215 + AluY SINE Alu 1 301 -10 848 229 197 31 chr9 38516670 38517055 -103754389 - LTR33A LTR ERVL -8 515 67 1895 149 3 3 chr9 38517770 38518072 -103753372 - AluSx SINE Alu -10 302 1 2272 84 0 0 chr9 38518199 38518496 -103752948 + AluY SINE Alu 1 297 -14 2377 81 0 0 chr9 38518607 38518914 -103752530 - AluY SINE Alu -4 307 1 23 0 0 0 chr9 38518960 38518983 -103752461 + AT_rich Low_complexity Low_complexity 1 23 0 779 155 9 0 chr9 38518988 38519104 -103752340 - FLAM_C SINE Alu -16 117 1 2235 82 0 7 chr9 38519503 38519795 -103751649 + AluSp SINE Alu 1 290 -23 1390 162 43 32 chr9 38521235 38521513 -103749931 - AluJo SINE Alu -21 291 11 1693 146 25 4 chr9 38522074 38522203 -103749241 + AluJb SINE Alu 1 126 -186 221 0 35 0 chr9 38522203 38522232 -103749212 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1693 146 25 4 chr9 38522232 38522382 -103749062 + AluJb SINE Alu 126 286 -26 237 226 18 9 chr9 38522860 38522929 -103748515 + G-rich Low_complexity Low_complexity 1 69 0 473 240 24 32 chr9 38522931 38523056 -103748388 + MER20B DNA MER1_type 57 180 -603 25 0 0 0 chr9 38523213 38523238 -103748206 + AT_rich Low_complexity Low_complexity 1 25 0 275 279 29 0 chr9 38523362 38523466 -103747978 + MER20B DNA MER1_type 519 625 -158 1207 101 0 0 chr9 38523469 38523638 -103747806 - AluSg/x SINE Alu -9 301 133 607 232 18 0 chr9 38523638 38523802 -103747642 + MER20B DNA MER1_type 617 783 0 2231 98 3 0 chr9 38523925 38524231 -103747213 - AluSx SINE Alu -5 307 1 2251 91 0 0 chr9 38524296 38524594 -103746850 - AluSp SINE Alu -15 298 1 5956 117 83 16 chr9 38524684 38525935 -103745509 - L1MA6 LINE L1 0 6300 4958 1979 92 6 63 chr9 38525936 38526253 -103745191 - AluSq SINE Alu -14 299 1 617 219 0 0 chr9 38526279 38526393 -103745051 - FLAM_A SINE Alu -19 114 1 1390 224 82 24 chr9 38526395 38526775 -103744669 - Charlie2 DNA MER1_type -2417 445 44 318 289 52 59 chr9 38527001 38527136 -103744308 - L2 LINE L2 -558 2756 2623 292 272 44 0 chr9 38527174 38527288 -103744156 + MER102a DNA MER1_type 212 330 0 252 347 72 0 chr9 38527311 38527478 -103743966 + L2 LINE L2 2491 2669 -645 2189 78 0 17 chr9 38528299 38528595 -103742849 + AluY SINE Alu 1 291 -20 1498 93 9 22 chr9 38528595 38528821 -103742623 - AluY SINE Alu -20 291 69 2073 117 0 0 chr9 38528958 38529249 -103742195 - AluSx SINE Alu -21 291 1 329 280 168 8 chr9 38529444 38529569 -103741875 - L1M4c LINE L1 -4043 2341 2197 2272 97 10 0 chr9 38530006 38530315 -103741129 + AluSx SINE Alu 1 312 0 1881 133 37 0 chr9 38530738 38531038 -103740406 - AluSx SINE Alu -1 311 1 724 156 23 0 chr9 38531046 38531174 -103740270 - FLAM_A SINE Alu -2 140 10 391 269 16 113 chr9 38531532 38531718 -103739726 + MIR3 SINE MIR 34 201 -7 182 372 85 0 chr9 38532043 38532137 -103739307 + L2 LINE L2 3195 3296 -17 206 282 0 51 chr9 38533871 38533988 -103737456 + C-rich Low_complexity Low_complexity 2 112 0 192 192 135 0 chr9 38535754 38535806 -103735638 - L2 LINE L2 -259 3054 2996 198 0 0 0 chr9 38536502 38536524 -103734920 + (TG)n Simple_repeat Simple_repeat 1 22 0 434 328 79 4 chr9 38536701 38536954 -103734490 + L2 LINE L2 2706 2977 -337 192 197 49 49 chr9 38537083 38537144 -103734300 + L3 LINE CR1 1513 1573 -4 622 272 37 52 chr9 38537545 38537817 -103733627 - L2 LINE L2 -4 3309 3042 1803 134 28 11 chr9 38537864 38538147 -103733297 - AluJb SINE Alu -19 293 6 264 333 167 16 chr9 38538714 38538840 -103732604 + L2 LINE L2 3124 3268 -4 200 108 0 27 chr9 38539396 38539433 -103732011 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 814 207 34 0 chr9 38539486 38539665 -103731779 + Charlie1 DNA MER1_type 52 236 -2525 790 145 7 0 chr9 38539653 38539791 -103731653 + Charlie1 DNA MER1_type 2622 2760 -1 * 350 42 21 0 chr9 38541080 38541128 -103730316 + (CA)n Simple_repeat Simple_repeat 2 50 0 2631 3 0 3 chr9 38544776 38545071 -103726373 - AluYa5 SINE Alu -17 294 1 1824 157 3 0 chr9 38545901 38546200 -103725244 - AluJb SINE Alu -12 300 1 486 256 43 8 chr9 38549480 38549597 -103721847 + MIR SINE MIR 31 151 -111 371 152 0 51 chr9 38549692 38549771 -103721673 - L1MC4 LINE L1 -193 7849 7775 221 283 0 0 chr9 38549933 38549979 -103721465 - L2 LINE L2 -1 3312 3267 340 341 0 0 chr9 38553140 38553310 -103718134 + (CAGAGA)n Simple_repeat Simple_repeat 2 171 0 235 214 0 0 chr9 38553525 38553581 -103717863 + (CTG)n Simple_repeat Simple_repeat 3 58 0 187 369 138 0 chr9 38555706 38555836 -103715608 + MIR3 SINE MIR 20 167 -41 2549 36 0 0 chr9 38557613 38557914 -103713530 - AluY SINE Alu 0 311 11 210 71 0 0 chr9 38558049 38558077 -103713367 + (T)n Simple_repeat Simple_repeat 1 28 0 185 204 102 0 chr9 38558078 38558127 -103713317 + L2 LINE L2 3217 3270 -2 207 323 45 30 chr9 38558341 38558474 -103712970 - L3 LINE CR1 -122 1455 1321 280 310 43 11 chr9 38558692 38558835 -103712609 - MIR SINE MIR -50 212 63 632 347 138 27 chr9 38559285 38559953 -103711491 + L2 LINE L2 1298 2039 -1275 1992 94 3 46 chr9 38561165 38561472 -103709972 - AluY SINE Alu -17 294 1 415 324 73 48 chr9 38562673 38562945 -103708499 + L2 LINE L2 2993 3271 -1 704 315 24 98 chr9 38563734 38564068 -103707376 + L2 LINE L2 2242 2504 -810 2130 105 13 3 chr9 38564068 38564374 -103707070 - AluSx SINE Alu -3 309 1 704 315 24 98 chr9 38564374 38564702 -103706742 + L2 LINE L2 2504 2855 -459 356 301 67 112 chr9 38564770 38565082 -103706362 + L2 LINE L2 2974 3271 -1 1415 179 43 14 chr9 38565347 38565627 -103705817 - AluJb SINE Alu -19 293 6 2569 51 0 0 chr9 38566337 38566648 -103704796 - AluY SINE Alu 0 311 1 449 251 53 59 chr9 38568336 38568472 -103702972 + L2 LINE L2 2174 2310 -1004 2247 103 0 0 chr9 38568472 38568774 -103702670 - AluSx SINE Alu -10 302 1 449 251 53 59 chr9 38568774 38568824 -103702620 + L2 LINE L2 2310 2359 -955 2124 113 3 0 chr9 38569678 38569989 -103701455 + AluSx SINE Alu 1 312 0 450 0 0 0 chr9 38570000 38570050 -103701394 + (CTA)n Simple_repeat Simple_repeat 3 52 0 25 0 0 0 chr9 38570992 38571017 -103700427 + GC_rich Low_complexity Low_complexity 1 25 0 506 328 0 0 chr9 38571098 38571343 -103700101 + C-rich Low_complexity Low_complexity 1 245 0 498 237 17 17 chr9 38572202 38572320 -103699124 - MIR SINE MIR -66 142 25 714 238 19 48 chr9 38573172 38573378 -103698066 - ERVL LTR ERVL -1472 4292 4093 390 121 0 0 chr9 38573822 38573888 -103697556 + (TG)n Simple_repeat Simple_repeat 1 66 0 360 0 0 0 chr9 38575702 38575742 -103695702 + (CA)n Simple_repeat Simple_repeat 2 41 0 239 114 0 0 chr9 38575876 38575911 -103695533 + MIR SINE MIR 113 147 -61 210 37 0 0 chr9 38575913 38575940 -103695504 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 246 276 0 0 chr9 38578921 38578979 -103692465 - L2 LINE L2 -27 3245 3188 200 281 297 10 chr9 38579086 38579295 -103692149 - L2 LINE L2 -285 2987 2721 260 232 18 0 chr9 38579348 38579404 -103692040 + L2 LINE L2 3179 3235 -37 1141 290 62 70 chr9 38579986 38580685 -103690759 + L2 LINE L2 1981 2673 -641 309 237 144 0 chr9 38581518 38581615 -103689829 - L2 LINE L2 -3 3310 3200 232 314 100 22 chr9 38581786 38582015 -103689429 + L3 LINE CR1 1101 1347 -230 244 273 99 58 chr9 38582068 38582189 -103689255 - L2 LINE L2 0 3313 3188 457 333 20 0 chr9 38584664 38584817 -103686627 - L3 LINE CR1 -99 1478 1323 534 142 194 15 chr9 38584881 38585015 -103686429 - L1MC2 LINE L1 0 6344 6187 460 264 0 0 chr9 38585205 38585315 -103686129 - L3 LINE CR1 -568 1009 900 1979 127 0 3 chr9 38585442 38585734 -103685710 - AluSx SINE Alu -21 291 1 257 344 47 3 chr9 38585835 38586060 -103685384 - L3 LINE CR1 -708 869 578 214 280 0 27 chr9 38587738 38587813 -103683631 + G-rich Low_complexity Low_complexity 5 77 0 2351 93 0 0 chr9 38590333 38590643 -103680801 - AluSg SINE Alu 0 310 1 191 277 169 81 chr9 38591134 38591282 -103680162 - MIR SINE MIR -70 192 32 1600 125 21 113 chr9 38592780 38593116 -103678328 - AluJb SINE Alu -7 305 1 213 94 0 0 chr9 38596324 38596356 -103675088 + (TG)n Simple_repeat Simple_repeat 2 33 0 2343 78 0 0 chr9 38597068 38597364 -103674080 - AluSp SINE Alu -17 296 1 305 335 142 14 chr9 38597976 38598547 -103672897 - L2 LINE L2 -352 2962 2319 1014 253 237 27 chr9 38599329 38599763 -103671681 - MLT2F LTR ERVL 0 663 115 1972 114 50 3 chr9 38599763 38600061 -103671383 - AluSx SINE Alu 0 312 1 1014 253 237 27 chr9 38600061 38600112 -103671332 - MLT2F LTR ERVL -548 115 76 1469 242 36 62 chr9 38600276 38600694 -103670750 + MLT1I LTR MaLR 1 407 -2 372 268 16 24 chr9 38601719 38601846 -103669598 + MIR3 SINE MIR 71 196 -12 376 239 54 43 chr9 38602049 38602141 -103669303 - L2 LINE L2 0 3313 3221 303 251 53 99 chr9 38603216 38603387 -103668057 + MIR SINE MIR 8 170 -92 657 184 53 0 chr9 38603766 38603880 -103667564 - L2 LINE L2 0 3313 3194 251 291 133 88 chr9 38604203 38604601 -103666843 + L2 LINE L2 2805 3220 -52 1019 180 0 0 chr9 38604682 38604843 -103666601 + FRAM SINE Alu 5 165 -11 476 304 128 16 chr9 38605214 38605471 -103665973 - MLT1I LTR MaLR -7 402 117 181 306 63 27 chr9 38605715 38605826 -103665618 + MIR3 SINE MIR 4 118 -90 530 280 142 35 chr9 38606106 38606338 -103665106 + MIR SINE MIR 4 260 -2 706 142 16 8 chr9 38607500 38607627 -103663817 + Tigger2 DNA MER2_type 1 128 -2590 * 1592 129 172 19 chr9 38607623 38607948 -103663496 + Tigger2 DNA MER2_type 2344 2718 0 1287 275 35 49 chr9 38608165 38608470 -103662974 - L1ME4a LINE L1 -1 6120 5812 2079 145 14 0 chr9 38608470 38608767 -103662677 + AluJo SINE Alu 1 301 -11 1287 275 35 49 chr9 38608767 38609111 -103662333 - L1ME4a LINE L1 -309 5812 5480 204 40 0 0 chr9 38609693 38609718 -103661726 + (CTG)n Simple_repeat Simple_repeat 1 25 0 2791 84 82 10 chr9 38609817 38610231 -103661213 + MLT2A1 LTR ERVL 1 444 0 308 320 78 47 chr9 38610614 38610973 -103660471 - L2 LINE L2 -360 2954 2585 398 208 48 28 chr9 38612162 38612282 -103659162 + MIR3 SINE MIR 36 160 -48 430 243 62 14 chr9 38612331 38612475 -103658969 + MER103 DNA DNA 13 163 -3 599 184 293 7 chr9 38612553 38612700 -103658744 - MER5A DNA MER1_type 0 189 1 240 217 0 0 chr9 38612747 38612793 -103658651 + L2 LINE L2 2924 2969 -303 235 287 217 57 chr9 38613069 38613226 -103658218 - MIR3 SINE MIR -3 205 24 322 245 11 69 chr9 38613710 38613898 -103657546 + C-rich Low_complexity Low_complexity 4 180 0 1057 234 66 18 chr9 38614046 38614380 -103657064 - L1ME1 LINE L1 -5 6161 5812 298 105 0 151 chr9 38614376 38614462 -103656982 - L1MB7 LINE L1 0 6184 6112 * 252 96 135 0 chr9 38614451 38614503 -103656941 + L1MB8 LINE L1 6079 6137 -41 * 3807 153 35 50 chr9 38614522 38615177 -103656267 - L1MB8 LINE L1 -50 6128 5486 2197 119 0 3 chr9 38615177 38615470 -103655974 + AluJb SINE Alu 1 292 -20 3807 153 35 50 chr9 38615470 38615609 -103655835 - L1MB8 LINE L1 -692 5486 5346 2004 172 0 7 chr9 38615629 38615937 -103655507 - AluSx SINE Alu -6 306 1 22 0 0 0 chr9 38616431 38616453 -103654991 + AT_rich Low_complexity Low_complexity 1 22 0 332 204 23 28 chr9 38616887 38616987 -103654457 - L1MB8 LINE L1 -1651 4495 4397 422 316 23 12 chr9 38616998 38617169 -103654275 - L1MEc LINE L1 -4548 1848 1676 1366 107 5 10 chr9 38667177 38667382 -103604062 - AluSq SINE Alu -109 204 1 2114 110 3 0 chr9 38667560 38667860 -103603584 + AluSx SINE Alu 1 301 -11 1107 125 0 0 chr9 38667860 38668046 -103603398 + AluSg/x SINE Alu 132 310 0 1649 156 17 34 chr9 38668049 38668344 -103603100 + AluJo SINE Alu 1 290 -22 2320 68 0 0 chr9 38668474 38668766 -103602678 + AluSq SINE Alu 1 292 -21 1623 115 15 15 chr9 38669015 38669275 -103602169 - AluSx SINE Alu -15 297 38 365 90 0 75 chr9 38669394 38669461 -103601983 + Alu SINE Alu 241 302 0 231 174 72 0 chr9 38669601 38669670 -103601774 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 2113 102 7 7 chr9 38669726 38670029 -103601415 - AluSx SINE Alu -9 303 1 2272 94 13 0 chr9 38670041 38670348 -103601096 - AluSx SINE Alu 0 312 2 531 209 152 25 chr9 38670552 38670710 -103600734 - MIR SINE MIR 0 262 85 1511 93 15 0 chr9 38670729 38670933 -103600511 + AluSq SINE Alu 1 207 -106 2757 16 0 0 chr9 38671326 38671637 -103599807 + AluY SINE Alu 1 311 0 598 178 0 25 chr9 38672897 38673015 -103598429 - FLAM_A SINE Alu -19 123 9 433 169 0 0 chr9 38673063 38673134 -103598310 + AluJ/FLAM SINE Alu 29 99 -213 516 301 34 70 chr9 38673410 38673455 -103597989 - L2 LINE L2 -554 2760 2715 2213 116 0 3 chr9 38673455 38673766 -103597678 - AluSx SINE Alu -2 310 1 516 301 34 70 chr9 38673766 38673939 -103597505 - L2 LINE L2 -599 2715 2537 900 186 6 12 chr9 38673939 38674106 -103597338 + FRAM SINE Alu 1 166 0 516 301 34 70 chr9 38674106 38674302 -103597142 - L2 LINE L2 -777 2537 2271 2013 166 100 66 chr9 38674326 38674392 -103597052 - MLT1D LTR MaLR 0 505 443 2637 39 0 0 chr9 38674392 38674703 -103596741 + AluY SINE Alu 1 311 0 2013 166 100 66 chr9 38674703 38675081 -103596363 - MLT1D LTR MaLR -62 443 40 2125 85 14 0 chr9 38675081 38675374 -103596070 + AluSg SINE Alu 1 297 -13 2013 166 100 66 chr9 38675374 38675416 -103596028 - MLT1D LTR MaLR -465 40 1 2300 62 0 10 chr9 38675443 38675747 -103595697 + AluY SINE Alu 1 301 -10 347 245 64 0 chr9 38675873 38675967 -103595477 + L1ME3A LINE L1 6058 6157 -13 340 324 9 19 chr9 38676502 38676610 -103594834 - L3 LINE CR1 -31 1546 1440 425 274 156 3 chr9 38676719 38676883 -103594561 - MIR SINE MIR -42 220 34 655 330 28 32 chr9 38676927 38676981 -103594463 - L3 LINE CR1 -957 620 567 2036 104 28 0 chr9 38676981 38677269 -103594175 - AluSx SINE Alu -16 296 1 655 330 28 32 chr9 38677269 38677496 -103593948 - L3 LINE CR1 -1010 567 340 1835 154 3 10 chr9 38677928 38678239 -103593205 - AluSx SINE Alu -3 309 1 433 223 66 66 chr9 38678338 38678428 -103593016 + MER117 DNA MER1_type 32 124 -73 5927 62 31 17 chr9 38678428 38679197 -103592247 + LTR17 LTR ERV1 1 780 0 433 223 66 66 chr9 38679197 38679272 -103592172 + MER117 DNA MER1_type 123 197 0 2010 161 0 56 chr9 38679442 38679727 -103591717 - MER1B DNA MER1_type -2373 337 74 2136 91 23 26 chr9 38679727 38680035 -103591409 - AluSx SINE Alu -5 307 1 2010 161 0 56 chr9 38680035 38680104 -103591340 - MER1B DNA MER1_type -2636 74 3 2020 100 7 14 chr9 38680296 38680432 -103591012 + AluSx SINE Alu 1 136 -176 2314 48 34 0 chr9 38680432 38680723 -103590721 + AluY SINE Alu 1 301 -10 2020 100 7 14 chr9 38680723 38680877 -103590567 + AluSx SINE Alu 136 289 -23 2006 106 4 0 chr9 38681219 38681493 -103589951 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr9 38681497 38681521 -103589923 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 581 45 0 0 chr9 38681587 38681654 -103589790 + U4 snRNA snRNA 1 67 -78 1666 146 53 14 chr9 38681672 38681953 -103589491 + AluJb SINE Alu 1 292 -20 1693 168 0 10 chr9 38682188 38682486 -103588958 + AluJb SINE Alu 1 295 -17 2241 104 0 0 chr9 38682652 38682950 -103588494 + AluSx SINE Alu 1 298 -14 350 352 151 21 chr9 38683053 38683437 -103588007 + L2 LINE L2 2089 2522 -792 2460 77 0 0 chr9 38683454 38683766 -103587678 - AluSx SINE Alu 0 312 1 1527 196 0 3 chr9 38683776 38684067 -103587377 - AluJo SINE Alu -22 290 1 669 158 0 110 chr9 38684251 38684313 -103587131 + FLAM_A SINE Alu 2 41 -261 2484 55 0 0 chr9 38684313 38684621 -103586823 - AluY SINE Alu -3 308 1 669 158 0 110 chr9 38684621 38684704 -103586740 + FLAM_A SINE Alu 41 131 -171 2255 93 0 0 chr9 38685176 38685478 -103585966 - AluSx SINE Alu -10 302 1 219 345 122 31 chr9 38685974 38686144 -103585300 - L2 LINE L2 -452 2862 2709 2488 62 0 0 chr9 38686144 38686453 -103584991 + AluY SINE Alu 1 309 -2 219 345 122 31 chr9 38686453 38686593 -103584851 - L2 LINE L2 -605 2709 2514 1558 110 8 61 chr9 38686593 38686857 -103584587 + AluSx SINE Alu 1 250 -62 219 345 122 31 chr9 38686857 38686899 -103584545 - L2 LINE L2 -800 2514 2477 180 266 11 117 chr9 38686907 38687001 -103584443 - L2 LINE L2 -957 2357 2274 2205 98 3 0 chr9 38687026 38687321 -103584123 - AluSx SINE Alu -16 296 1 1800 113 77 0 chr9 38687465 38687739 -103583705 - AluSg SINE Alu -15 295 1 432 0 0 0 chr9 38687873 38687921 -103583523 + (TG)n Simple_repeat Simple_repeat 1 48 0 1650 179 0 0 chr9 38687921 38688200 -103583244 - AluJo SINE Alu -33 279 1 627 285 162 58 chr9 38688316 38688522 -103582922 + L2 LINE L2 1968 2151 -1163 2395 56 0 7 chr9 38688522 38688828 -103582616 - AluY SINE Alu -7 304 1 627 285 162 58 chr9 38688828 38689134 -103582310 + L2 LINE L2 2151 2533 -781 25 0 0 0 chr9 38689561 38689586 -103581858 + AT_rich Low_complexity Low_complexity 1 25 0 1699 174 0 3 chr9 38689694 38689976 -103581468 + AluJo SINE Alu 1 281 -31 372 77 0 0 chr9 38691139 38691191 -103580253 + (T)n Simple_repeat Simple_repeat 1 52 0 809 134 0 24 chr9 38691470 38691597 -103579847 - FLAM_C SINE Alu -13 130 7 2146 110 0 7 chr9 38691622 38691931 -103579513 - AluSx SINE Alu -5 307 1 633 164 77 0 chr9 38692202 38692306 -103579138 - FLAM_A SINE Alu -20 122 11 1500 176 13 36 chr9 38692393 38692700 -103578744 + AluJo SINE Alu 3 302 -10 2180 113 3 0 chr9 38692883 38693194 -103578250 - AluSx SINE Alu 0 312 1 1675 156 46 0 chr9 38693196 38693479 -103577965 - AluSx SINE Alu -16 296 1 2059 115 0 10 chr9 38693588 38693883 -103577561 - AluSx SINE Alu -18 294 3 26 50 0 0 chr9 38693887 38693927 -103577517 + AT_rich Low_complexity Low_complexity 1 40 0 802 162 0 0 chr9 38693928 38694045 -103577399 - FLAM_C SINE Alu -16 117 1 863 236 77 5 chr9 38694554 38694762 -103576682 - MER58A DNA MER1_type -1 223 1 489 268 32 79 chr9 38694763 38694953 -103576491 - MIR SINE MIR -81 181 1 244 314 109 0 chr9 38694998 38695154 -103576290 + L1ME4a LINE L1 5738 5910 -211 245 234 62 76 chr9 38695176 38695286 -103576158 + L1ME4a LINE L1 5962 6071 -50 2222 93 0 7 chr9 38695286 38695588 -103575856 - AluSc SINE Alu -9 300 1 245 234 62 76 chr9 38695588 38695622 -103575822 + L1ME4a LINE L1 6071 6104 -17 1850 191 103 2 chr9 38696256 38696655 -103574789 - REP3 LTR ERV 0 562 124 954 202 34 0 chr9 38696654 38696832 -103574612 - MER82 DNA MER2_type -462 191 8 * 230 170 9 189 chr9 38696839 38696945 -103574499 - Charlie1 DNA MER1_type -2669 92 6 212 309 27 82 chr9 38696954 38697064 -103574380 + L2 LINE L2 3151 3254 -18 2254 50 11 0 chr9 38697150 38697457 -103573987 - AluY SINE Alu 0 310 1 1826 150 7 7 chr9 38697458 38697764 -103573680 - AluJb SINE Alu -5 307 2 2030 104 4 0 chr9 38697778 38698096 -103573348 - AluSq SINE Alu 0 322 4 318 51 0 0 chr9 38698121 38698160 -103573284 + tRNA-Thr-ACA tRNA tRNA 1 39 -37 * 14774 119 13 18 chr9 38698157 38698905 -103572539 - Tigger1 DNA MER2_type -188 2230 1480 2305 91 0 3 chr9 38698905 38699214 -103572230 - AluSc SINE Alu -1 308 1 14774 119 13 18 chr9 38699214 38699526 -103571918 - Tigger1 DNA MER2_type -938 1480 1168 2140 107 0 35 chr9 38699526 38699844 -103571600 - AluSx SINE Alu -5 307 1 14774 119 13 18 chr9 38699844 38700809 -103570635 - Tigger1 DNA MER2_type -1250 1168 214 1490 149 67 8 chr9 38700809 38701064 -103570380 + AluJb SINE Alu 17 286 -26 14774 119 13 18 chr9 38701064 38701277 -103570167 - Tigger1 DNA MER2_type -2204 214 1 2233 116 0 0 chr9 38701581 38701891 -103569553 - AluSx SINE Alu 0 312 3 224 273 216 0 chr9 38702124 38702212 -103569232 + L2 LINE L2 3153 3259 -13 1052 166 73 214 chr9 38702568 38702964 -103568480 - MLT1C LTR MaLR -1 466 202 2300 83 0 7 chr9 38702964 38703266 -103568178 - AluSq SINE Alu -13 300 1 1052 166 73 214 chr9 38703266 38703406 -103568038 - MLT1C LTR MaLR -265 202 44 1503 189 92 87 chr9 38703408 38703820 -103567624 + MLT2D LTR ERVL 1 414 0 305 136 0 0 chr9 38703825 38703869 -103567575 - MLT2D LTR ERVL -217 197 154 409 141 109 70 chr9 38703947 38704018 -103567426 - MER5A DNA MER1_type -77 112 33 560 200 86 0 chr9 38704018 38704123 -103567321 - MER81 DNA DNA 0 114 1 409 141 109 70 chr9 38704123 38704155 -103567289 - MER5A DNA MER1_type -156 33 4 311 261 80 0 chr9 38704538 38704626 -103566818 + MIR SINE MIR 20 114 -148 622 194 28 0 chr9 38704868 38705119 -103566325 + CT-rich Low_complexity Low_complexity 1 258 0 607 207 0 0 chr9 38705126 38705237 -103566207 - AluJb SINE Alu 0 312 202 2182 118 0 0 chr9 38705402 38705689 -103565755 + AluSx SINE Alu 1 287 -25 246 62 0 0 chr9 38706096 38706128 -103565316 + (TG)n Simple_repeat Simple_repeat 2 33 0 229 374 60 12 chr9 38707115 38707281 -103564163 + L3 LINE CR1 334 507 -1070 1597 149 138 0 chr9 38707540 38707809 -103563635 + AluJb SINE Alu 1 306 -6 2349 111 0 0 chr9 38708435 38708733 -103562711 + AluSq SINE Alu 1 298 -15 2138 125 0 25 chr9 38708744 38709064 -103562380 + AluSx SINE Alu 1 312 0 1817 156 41 3 chr9 38709083 38709378 -103562066 + AluJb SINE Alu 1 306 -6 28 0 0 0 chr9 38709443 38709471 -103561973 + AT_rich Low_complexity Low_complexity 1 28 0 1847 174 7 3 chr9 38709586 38709880 -103561564 + AluJb SINE Alu 1 295 -17 2157 136 0 0 chr9 38709912 38710214 -103561230 - AluSx SINE Alu -10 302 1 614 170 0 0 chr9 38711126 38711238 -103560206 - AluY SINE Alu -5 306 195 4914 87 11 8 chr9 38712059 38712717 -103558727 + PABL_A LTR ERV1 1 660 0 6354 88 26 0 chr9 38713206 38714616 -103556828 + L1PA13 LINE L1 4716 6163 0 677 229 20 7 chr9 38714978 38715131 -103556313 + MLT1F LTR MaLR 1 155 -387 731 164 39 0 chr9 38715160 38715288 -103556156 + FLAM_A SINE Alu 1 133 0 2421 81 0 3 chr9 38715299 38715597 -103555847 + AluSx SINE Alu 3 299 -13 2374 111 0 0 chr9 38715606 38715913 -103555531 + AluSq SINE Alu 1 307 -6 255 275 12 0 chr9 38716294 38716374 -103555070 - MIR SINE MIR -114 148 68 1311 163 0 14 chr9 38716442 38716657 -103554787 + AluJo SINE Alu 1 212 -100 205 245 0 19 chr9 38716792 38716845 -103554599 + CT-rich Low_complexity Low_complexity 5 56 0 2623 51 0 16 chr9 38716915 38717231 -103554213 - AluY SINE Alu 0 311 1 365 91 30 15 chr9 38717231 38717297 -103554147 + MLT1D LTR MaLR 439 505 0 410 302 34 70 chr9 38717321 38717517 -103553927 + L2 LINE L2 2271 2473 -841 891 186 6 12 chr9 38717517 38717684 -103553760 - FRAM SINE Alu 0 166 1 410 302 34 70 chr9 38717684 38717857 -103553587 + L2 LINE L2 2473 2715 -599 2339 116 0 3 chr9 38717857 38718168 -103553276 + AluSx SINE Alu 1 310 -2 410 302 34 70 chr9 38718168 38718209 -103553235 + L2 LINE L2 2715 2756 -558 428 169 0 0 chr9 38718489 38718560 -103552884 - AluJ/FLAM SINE Alu -213 99 29 591 178 0 25 chr9 38718608 38718726 -103552718 + FLAM_A SINE Alu 9 123 -19 2897 16 0 0 chr9 38719986 38720297 -103551147 - AluY SINE Alu 0 311 1 1602 93 15 0 chr9 38720690 38720894 -103550550 - AluSq SINE Alu -106 207 1 455 209 152 25 chr9 38720913 38721071 -103550373 + MIR SINE MIR 85 262 0 2287 109 0 3 chr9 38721275 38721578 -103549866 + AluSx SINE Alu 2 303 -9 231 174 72 0 chr9 38721634 38721703 -103549741 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 368 90 0 75 chr9 38721843 38721910 -103549534 - Alu SINE Alu 0 302 241 1729 115 15 15 chr9 38722029 38722289 -103549155 + AluSx SINE Alu 38 297 -15 2449 68 0 0 chr9 38722538 38722830 -103548614 - AluSq SINE Alu -21 292 1 1771 156 17 34 chr9 38722960 38723255 -103548189 - AluJo SINE Alu -22 290 1 1174 125 0 0 chr9 38723258 38723444 -103548000 - AluSg/x SINE Alu 0 312 134 2239 110 3 0 chr9 38723444 38723744 -103547700 - AluSx SINE Alu -11 301 1 2050 134 0 7 chr9 38723922 38724220 -103547224 + AluSx SINE Alu 1 296 -16 240 122 73 0 chr9 38724266 38724307 -103547137 + L1MC4 LINE L1 6660 6703 -1339 194 128 0 21 chr9 38724308 38724339 -103547105 + (TA)n Simple_repeat Simple_repeat 2 33 -14 1862 136 0 11 chr9 38724339 38724611 -103546833 - AluSx SINE Alu -31 281 13 194 128 0 21 chr9 38724611 38724626 -103546818 + (TA)n Simple_repeat Simple_repeat 33 47 0 26 30 0 0 chr9 38724780 38724813 -103546631 + AT_rich Low_complexity Low_complexity 1 33 0 2337 94 0 3 chr9 38725215 38725513 -103545931 + AluSg SINE Alu 1 297 -13 1063 156 0 18 chr9 38725916 38726083 -103545361 + FAM SINE Alu 5 168 -7 207 342 79 9 chr9 38726281 38726395 -103545049 - L2 LINE L2 -224 3048 2927 2247 110 0 0 chr9 38726519 38726809 -103544635 + AluSx SINE Alu 1 290 -22 422 330 134 3 chr9 38726827 38727148 -103544296 - L2 LINE L2 -666 2648 2286 263 275 0 0 chr9 38727319 38727388 -103544056 + MIR3 SINE MIR 92 160 -48 2432 77 0 19 chr9 38727593 38727903 -103543541 - AluY SINE Alu -7 304 1 488 322 57 4 chr9 38728355 38728582 -103542862 + MIR SINE MIR 20 258 -4 2249 98 0 30 chr9 38728876 38729181 -103542263 + AluSq SINE Alu 1 296 -17 2550 69 3 0 chr9 38729450 38729755 -103541689 - AluSp SINE Alu -7 306 1 2522 59 0 16 chr9 38730145 38730451 -103540993 + AluSc SINE Alu 1 301 -8 2413 103 0 0 chr9 38730531 38730842 -103540602 + AluSx SINE Alu 1 311 -1 251 155 17 35 chr9 38730847 38730905 -103540539 + L1ME3 LINE L1 6100 6156 -6 1942 121 40 0 chr9 38731795 38732097 -103539347 - AluSx SINE Alu 0 313 1 2206 91 49 0 chr9 38732219 38732504 -103538940 - AluSx SINE Alu -13 299 1 2352 90 0 13 chr9 38732544 38732844 -103538600 - AluSg SINE Alu -14 296 1 1894 167 6 6 chr9 38733236 38733548 -103537896 + AluJo SINE Alu 1 312 0 1602 146 63 8 chr9 38733686 38733939 -103537505 - AluJo SINE Alu -45 267 1 1970 167 0 0 chr9 38734156 38734449 -103536995 + AluJb SINE Alu 2 294 -18 2139 107 16 26 chr9 38734459 38734767 -103536677 + AluSx SINE Alu 1 305 -7 2315 89 0 3 chr9 38734782 38735073 -103536371 + AluSc SINE Alu 1 290 -19 2093 120 0 62 chr9 38735321 38735646 -103535798 - AluSx SINE Alu -7 305 1 2265 113 0 7 chr9 38736086 38736396 -103535048 + AluSc SINE Alu 2 309 0 9549 189 30 45 chr9 38736396 38737727 -103533717 + L1M2 LINE L1 3200 4460 -1840 2223 125 6 0 chr9 38737727 38738038 -103533406 + AluSq SINE Alu 1 313 0 9549 189 30 45 chr9 38738038 38739353 -103532091 + L1M2 LINE L1 4460 5793 -507 207 0 0 0 chr9 38739353 38739376 -103532068 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 215 0 0 chr9 38739375 38739440 -103532004 + (TA)n Simple_repeat Simple_repeat 2 66 0 2330 132 3 8 chr9 38739466 38739836 -103531608 + L1PB1 LINE L1 5784 6151 0 2151 123 3 0 chr9 38740999 38741292 -103530152 + AluSx SINE Alu 1 294 -18 1404 158 4 25 chr9 38742278 38742519 -103528925 + MER46A DNA MER2_type 1 236 0 2551 56 0 3 chr9 38743812 38744114 -103527330 - AluY SINE Alu -10 301 1 277 319 22 0 chr9 38744502 38744593 -103526851 + L2 LINE L2 1352 1444 -1870 856 231 110 127 chr9 38744596 38745713 -103525731 - L2 LINE L2 0 3313 2212 649 248 79 3 chr9 38745729 38746029 -103525415 - MLT1J LTR MaLR -18 493 97 1174 219 97 21 chr9 38746038 38746317 -103525127 - AluJo SINE Alu -2 300 1 468 139 0 30 chr9 38746331 38746432 -103525012 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 300 88 263 0 chr9 38746432 38746489 -103524955 - HY3 scRNA scRNA -12 89 18 636 214 0 16 chr9 38746604 38746730 -103524714 + FLAM_C SINE Alu 2 125 -18 894 48 0 0 chr9 38746734 38746838 -103524606 + AluY SINE Alu 195 298 -13 1175 145 17 6 chr9 38746853 38747032 -103524412 + AluJo SINE Alu 113 293 -19 572 248 66 50 chr9 38747036 38747256 -103524188 - L2 LINE L2 -1145 2169 1943 2222 110 14 0 chr9 38747256 38747546 -103523898 + AluSx SINE Alu 1 294 -18 572 248 66 50 chr9 38747546 38747567 -103523877 - L2 LINE L2 -1371 1943 1924 2449 93 0 3 chr9 38748676 38748988 -103522456 - AluSx SINE Alu -1 311 1 26 0 0 0 chr9 38749279 38749305 -103522139 + AT_rich Low_complexity Low_complexity 1 26 0 416 110 12 37 chr9 38749329 38749411 -103522033 - L1MA8 LINE L1 -1 6290 6211 2402 91 10 0 chr9 38749447 38749745 -103521699 - AluSx SINE Alu -11 301 1 839 123 15 46 chr9 38749776 38749906 -103521538 - FLAM_C SINE Alu -16 127 2 2204 113 0 35 chr9 38751015 38751325 -103520119 + AluSx SINE Alu 1 299 -13 252 308 48 10 chr9 38751376 38751480 -103519964 + L1M4 LINE L1 4024 4131 -2015 192 209 52 96 chr9 38751542 38751657 -103519787 - MER5A DNA MER1_type -45 144 35 * 512 252 0 8 chr9 38751560 38751679 -103519765 + MER5B DNA MER1_type 60 177 -1 675 186 8 39 chr9 38751713 38751842 -103519602 - FLAM_A SINE Alu -8 125 1 2077 129 0 0 chr9 38751852 38752146 -103519298 - AluJb SINE Alu -18 294 1 364 267 99 89 chr9 38752210 38752617 -103518827 + L1M4 LINE L1 4339 4753 -1393 2072 136 0 3 chr9 38752617 38752912 -103518532 - AluJb SINE Alu -18 294 1 364 267 99 89 chr9 38752912 38752987 -103518457 + L1M4 LINE L1 4753 4826 -1320 1866 164 27 0 chr9 38753046 38753339 -103518105 - AluJb SINE Alu -11 301 1 2298 95 0 0 chr9 38753447 38753743 -103517701 + AluSx SINE Alu 1 296 -16 2217 235 68 69 chr9 38754760 38755063 -103516381 - L1M4 LINE L1 -5756 786 484 2808 3 0 3 chr9 38755063 38755362 -103516082 - AluYa5 SINE Alu -13 298 1 2217 235 68 69 chr9 38755362 38755670 -103515774 - L1M4 LINE L1 -6058 484 174 849 138 15 0 chr9 38755670 38755800 -103515644 - FLAM_C SINE Alu -1 132 1 2217 235 68 69 chr9 38755800 38755970 -103515474 - L1M4 LINE L1 -6368 174 5 192 365 12 35 chr9 38756059 38756144 -103515300 - MIR SINE MIR -176 86 4 1857 142 31 0 chr9 38756171 38756460 -103514984 - AluSx SINE Alu -14 298 1 528 253 57 39 chr9 38756819 38757048 -103514396 - LTR16C LTR ERVL -3 488 256 458 276 111 9 chr9 38758577 38758794 -103512650 - MIR SINE MIR -15 247 9 349 268 297 14 chr9 38759534 38759743 -103511701 - L1ME4a LINE L1 -11 6110 5843 2050 60 32 35 chr9 38760527 38760858 -103510586 + AluY SINE Alu 1 330 0 2272 61 4 0 chr9 38760864 38761144 -103510300 + AluSx SINE Alu 1 281 -31 243 0 0 0 chr9 38761144 38761171 -103510273 + (CA)n Simple_repeat Simple_repeat 2 28 0 463 191 22 0 chr9 38761286 38761375 -103510069 - L1MA10 LINE L1 -53 6281 6191 430 234 81 24 chr9 38761773 38761897 -103509547 - MIR SINE MIR 0 262 132 1911 83 54 14 chr9 38762178 38762456 -103508988 - AluSx SINE Alu -23 289 1 1705 141 37 27 chr9 38763223 38763521 -103507923 + AluJb SINE Alu 1 301 -11 664 244 102 39 chr9 38763687 38764067 -103507377 - MLT1G LTR MaLR -12 543 115 679 184 179 11 chr9 38764737 38764916 -103506528 + MER3 DNA MER1_type 1 209 0 224 333 92 64 chr9 38764926 38765208 -103506236 + L3 LINE CR1 888 1177 -400 205 161 0 0 chr9 38765513 38765544 -103505900 + polypyrimidine Low_complexity Low_complexity 2 32 0 276 130 0 0 chr9 38767377 38767423 -103504021 + (A)n Simple_repeat Simple_repeat 1 46 0 603 213 116 46 chr9 38768497 38768713 -103502731 - MIR SINE MIR -12 250 20 2130 114 0 3 chr9 38770580 38770887 -103500557 - AluSx SINE Alu -6 306 1 2368 72 0 3 chr9 38771439 38771743 -103499701 + AluY SINE Alu 1 303 -8 2197 90 0 35 chr9 38774374 38774684 -103496760 + AluSx SINE Alu 9 307 -5 558 231 103 51 chr9 38774762 38774957 -103496487 - MIR SINE MIR -50 212 8 1793 161 3 0 chr9 38775371 38775669 -103495775 - AluJb SINE Alu -13 299 1 1086 172 14 47 chr9 38776627 38776842 -103494602 - MER3 DNA MER1_type 0 209 2 337 263 0 0 chr9 38776912 38776992 -103494452 + MIR SINE MIR 67 146 -62 329 289 53 0 chr9 38777046 38777160 -103494284 + L1MC4 LINE L1 7793 7912 -130 281 350 102 27 chr9 38777491 38777677 -103493767 + MIR SINE MIR 2 201 -61 2237 89 0 16 chr9 38777745 38778061 -103493383 + AluY SINE Alu 1 311 0 1197 65 0 7 chr9 38778606 38778759 -103492685 - AluSq SINE Alu -12 301 150 1860 120 3 18 chr9 38778820 38779104 -103492340 - AluSx SINE Alu -32 280 1 2076 103 13 3 chr9 38779201 38779501 -103491943 + AluSx SINE Alu 1 303 -9 1602 163 11 3 chr9 38780323 38780606 -103490838 - AluJb SINE Alu -27 285 1 2175 96 3 10 chr9 38780850 38781163 -103490281 + AluSx SINE Alu 1 311 -1 2022 112 0 23 chr9 38781202 38781505 -103489939 - AluSx SINE Alu -16 296 1 2236 90 0 3 chr9 38781515 38781814 -103489630 - AluSx SINE Alu -14 298 1 229 311 78 59 chr9 38781815 38782034 -103489410 - L1ME LINE L1 -504 5617 5395 247 207 37 73 chr9 38782322 38782404 -103489040 - L1P LINE L1 -1140 5006 4928 2134 86 14 3 chr9 38783174 38783464 -103487980 + AluSx SINE Alu 3 295 -17 245 305 177 66 chr9 38783928 38784154 -103487290 - MIR SINE MIR 0 262 12 186 133 0 0 chr9 38784166 38784196 -103487248 + (A)n Simple_repeat Simple_repeat 1 30 0 268 318 102 0 chr9 38784496 38784584 -103486860 - L2 LINE L2 -3 3269 3173 262 267 215 22 chr9 38784726 38784861 -103486583 + MIR3 SINE MIR 33 193 -15 262 226 32 0 chr9 38785206 38785268 -103486176 + Charlie8 DNA MER1_type 2344 2407 -10 24 67 0 0 chr9 38786230 38786275 -103485169 + GC_rich Low_complexity Low_complexity 1 45 0 323 274 10 69 chr9 38786911 38787013 -103484431 + MIR SINE MIR 94 189 -73 24 0 0 0 chr9 38787069 38787093 -103484351 + AT_rich Low_complexity Low_complexity 1 24 0 211 265 60 60 chr9 38788319 38788402 -103483042 - L2 LINE L2 -332 2940 2858 2255 157 25 45 chr9 38788863 38789304 -103482140 - LTR3 LTR ERVK 0 432 1 2189 238 83 18 chr9 38789619 38790170 -103481274 + MLT1K LTR MaLR 2 588 0 2261 111 0 0 chr9 38790170 38790477 -103480967 + AluSx SINE Alu 1 307 -5 2375 68 3 7 chr9 38790542 38790852 -103480592 + AluSp SINE Alu 1 309 -4 1999 141 3 0 chr9 38790865 38791163 -103480281 + AluSx SINE Alu 1 299 -13 331 143 18 0 chr9 38791480 38791536 -103479908 - MLT2B1 LTR ERVL 0 520 464 1451 182 111 22 chr9 38791548 38791895 -103479549 - MLT1B LTR MaLR -9 558 4 238 218 0 18 chr9 38791898 38791953 -103479491 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 243 261 45 23 chr9 38791953 38792041 -103479403 + L1MC4 LINE L1 6614 6703 -1339 * 247 333 0 0 chr9 38791997 38792087 -103479357 - L1MC4 LINE L1 -1339 6703 6614 257 231 62 0 chr9 38792090 38792155 -103479289 + (CATG)n Simple_repeat Simple_repeat 4 72 0 225 193 35 18 chr9 38792155 38792212 -103479232 - L1MCa LINE L1 -4363 2063 2006 236 215 31 0 chr9 38792212 38792277 -103479167 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 233 247 99 0 chr9 38792279 38792360 -103479084 - L1MC4 LINE L1 -1339 6703 6615 1046 205 73 24 chr9 38792373 38792607 -103478837 - MLT2D LTR ERVL -20 534 313 1778 128 53 0 chr9 38792607 38792888 -103478556 + AluSx SINE Alu 1 296 -16 1046 205 73 24 chr9 38792888 38792990 -103478454 - MLT2D LTR ERVL -241 313 83 2189 106 0 0 chr9 38792990 38793282 -103478162 + AluSq SINE Alu 1 292 -21 1090 92 0 7 chr9 38793282 38793465 -103477979 + AluSg/x SINE Alu 132 313 0 24 41 0 20 chr9 38793495 38793515 -103477929 + AT_rich Low_complexity Low_complexity 1 20 -28 2087 134 0 0 chr9 38793515 38793821 -103477623 + AluSx SINE Alu 1 306 -6 24 41 0 20 chr9 38793821 38793849 -103477595 + AT_rich Low_complexity Low_complexity 20 48 0 2255 77 3 13 chr9 38793864 38794176 -103477268 - AluY SINE Alu -2 309 1 6264 119 29 36 chr9 38794184 38794348 -103477096 - L1MA3 LINE L1 0 6305 6141 2334 25 43 4 chr9 38794348 38794629 -103476815 - AluY SINE Alu -18 293 2 6264 119 29 36 chr9 38794629 38794713 -103476731 - L1MA3 LINE L1 -164 6141 6058 859 113 0 64 chr9 38794713 38794854 -103476590 - FLAM_C SINE Alu -1 132 1 6264 119 29 36 chr9 38794854 38795006 -103476438 - L1MA3 LINE L1 -247 6058 5907 2184 123 0 0 chr9 38795006 38795316 -103476128 - AluSx SINE Alu -2 310 1 6264 119 29 36 chr9 38795316 38795867 -103475577 - L1MA3 LINE L1 -398 5907 5354 2075 116 3 3 chr9 38795867 38796170 -103475274 - AluSg SINE Alu -7 303 1 6264 119 29 36 chr9 38796170 38796767 -103474677 - L1MA3 LINE L1 -951 5354 4756 3640 117 2 4 chr9 38796783 38797295 -103474149 - MER9 LTR ERVK 0 511 1 1650 191 19 22 chr9 38797295 38797662 -103473782 - L1M1 LINE L1 -3524 4041 3676 1951 119 14 10 chr9 38797662 38797956 -103473488 - AluSx SINE Alu -17 295 1 2168 74 40 74 chr9 38797956 38797977 -103473467 - L1 LINE L1 -3956 3609 3589 1944 148 128 18 chr9 38797977 38798361 -103473083 + MSTA LTR MaLR 1 426 -2 2168 74 40 74 chr9 38798361 38798399 -103473045 - L1 LINE L1 -3976 3589 3551 2111 102 3 0 chr9 38798399 38798692 -103472752 + AluY SINE Alu 3 296 -15 2168 74 40 74 chr9 38798692 38799011 -103472433 - L1 LINE L1 -4014 3551 3243 2209 99 0 7 chr9 38799011 38799313 -103472131 - AluSx SINE Alu -12 300 1 380 76 0 61 chr9 38799324 38799390 -103472054 - AluSx SINE Alu -1 301 240 1259 111 0 0 chr9 38799390 38799561 -103471883 - AluSx SINE Alu -141 171 1 1181 112 5 0 chr9 38799561 38799748 -103471696 - L1M1 LINE L1 -4469 3096 2909 1020 175 0 6 chr9 38799748 38799925 -103471519 - AluSg/x SINE Alu 0 312 137 14121 119 56 49 chr9 38799926 38800390 -103471054 - L1M1 LINE L1 -4631 2934 2475 1939 154 0 0 chr9 38800390 38800696 -103470748 - AluSx SINE Alu -6 306 1 14121 119 56 49 chr9 38800696 38800739 -103470705 - L1M1 LINE L1 -5090 2475 2434 1967 111 20 7 chr9 38800739 38801036 -103470408 - AluSx SINE Alu -11 301 1 14121 119 56 49 chr9 38801036 38801232 -103470212 - L1M1 LINE L1 -5131 2434 2241 2092 102 6 29 chr9 38801232 38801546 -103469898 + AluSq SINE Alu 1 307 -6 14121 119 56 49 chr9 38801546 38801565 -103469879 - L1M1 LINE L1 -5324 2241 2224 1766 113 6 69 chr9 38801565 38801884 -103469560 + AluSp SINE Alu 1 299 -14 14121 119 56 49 chr9 38801884 38802802 -103468642 - L1M1 LINE L1 -5341 2224 1266 1769 148 34 0 chr9 38802802 38803100 -103468344 - AluSx SINE Alu -2 310 3 14121 119 56 49 chr9 38803100 38803884 -103467560 - L1M1 LINE L1 -6299 1266 489 1405 93 16 0 chr9 38803885 38804079 -103467365 + AluSg/x SINE Alu 106 302 -8 1711 147 0 61 chr9 38804466 38804792 -103466652 + AluJo SINE Alu 2 307 -5 2138 86 3 17 chr9 38805114 38805415 -103466029 - AluSx SINE Alu -15 297 1 829 183 0 0 chr9 38805421 38805552 -103465892 - FLAM_C SINE Alu -2 131 1 434 203 70 39 chr9 38808405 38808533 -103462911 - MIR3 SINE MIR -29 179 48 373 243 10 68 chr9 38808888 38808991 -103462453 + MIR SINE MIR 85 181 -81 530 107 0 0 chr9 38808991 38809075 -103462369 - Alu SINE Alu -1 311 228 4678 49 12 40 chr9 38809075 38809398 -103462046 + LTR8 LTR ERV1 1 331 -360 2352 87 10 0 chr9 38809398 38809698 -103461746 - AluSp SINE Alu -10 303 1 4678 49 12 40 chr9 38809698 38809961 -103461483 + LTR8 LTR ERV1 331 570 -121 2280 90 0 40 chr9 38809961 38810284 -103461160 + AluSx SINE Alu 1 310 -2 4678 49 12 40 chr9 38810284 38810351 -103461093 + LTR8 LTR ERV1 570 637 -54 1441 90 0 0 chr9 38810387 38810565 -103460879 - AluSq SINE Alu -135 178 1 2366 81 7 0 chr9 38811667 38811965 -103459479 - AluSg SINE Alu -10 300 1 183 245 0 96 chr9 38812504 38812598 -103458846 - MIR3 SINE MIR -33 175 91 231 36 0 0 chr9 38812862 38812890 -103458554 + (TG)n Simple_repeat Simple_repeat 1 28 0 2040 118 49 7 chr9 38815307 38815594 -103455850 - AluSx SINE Alu -13 299 1 1466 284 130 31 chr9 38815774 38816431 -103455013 + L2 LINE L2 1920 2778 -535 2121 122 3 3 chr9 38816431 38816726 -103454718 - AluSx SINE Alu -4 308 14 1466 284 130 31 chr9 38816726 38816929 -103454515 + L2 LINE L2 2778 2960 -353 239 208 42 0 chr9 38816929 38816977 -103454467 + polypyrimidine Low_complexity Low_complexity 2 51 0 736 224 22 22 chr9 38816977 38817160 -103454284 - FRAM SINE Alu -1 175 1 1521 91 5 5 chr9 38817176 38817375 -103454069 + AluSp SINE Alu 1 199 -114 337 176 0 0 chr9 38817375 38817426 -103454018 - Alu SINE Alu -257 51 1 462 318 63 63 chr9 38817464 38817513 -103453931 + L2 LINE L2 3012 3060 -253 2113 139 10 0 chr9 38817513 38817814 -103453630 - AluSx SINE Alu -8 304 1 462 318 63 63 chr9 38817814 38818066 -103453378 + L2 LINE L2 3059 3313 0 2307 112 0 0 chr9 38818421 38818716 -103452728 - AluSx SINE Alu -17 295 1 476 296 0 0 chr9 38818887 38819002 -103452442 + L2 LINE L2 3198 3312 -1 1694 159 32 174 chr9 38819082 38819386 -103452058 + L1MB3 LINE L1 5444 5789 -385 2385 114 0 0 chr9 38819386 38819693 -103451751 + AluSx SINE Alu 1 307 -5 1694 159 32 174 chr9 38819693 38819852 -103451592 + L1MB3 LINE L1 5789 5969 -205 2374 119 0 0 chr9 38819852 38820162 -103451282 + AluSx SINE Alu 1 310 -2 2089 109 0 44 chr9 38820171 38820502 -103450942 + AluSg SINE Alu 1 318 0 1694 159 32 174 chr9 38820502 38820648 -103450796 + L1MB3 LINE L1 5812 5977 -197 1843 124 7 7 chr9 38820648 38820922 -103450522 - MER1B DNA MER1_type -65 274 1 849 163 6 6 chr9 38820922 38821082 -103450362 + L1MB3 LINE L1 6015 6174 -9 1811 175 10 16 chr9 38821082 38821259 -103450185 - AluJo SINE Alu 0 312 136 2387 115 0 0 chr9 38821259 38821571 -103449873 - AluSx SINE Alu 0 312 1 1811 175 10 16 chr9 38821571 38821707 -103449737 - AluJo SINE Alu -176 136 1 2308 93 10 0 chr9 38821896 38822186 -103449258 - AluSx SINE Alu -19 293 1 225 326 11 0 chr9 38822958 38823047 -103448397 + L1MC/D LINE L1 5768 5857 -1951 692 135 9 0 chr9 38823277 38823388 -103448056 + AluSg/x SINE Alu 174 285 -27 209 0 98 0 chr9 38823402 38823443 -103448001 + (TA)n Simple_repeat Simple_repeat 2 46 0 2244 117 7 10 chr9 38823571 38823880 -103447564 - AluSx SINE Alu -4 308 1 228 244 0 16 chr9 38824282 38824344 -103447100 + MIR SINE MIR 93 152 -63 1872 125 25 66 chr9 38824352 38824672 -103446772 - AluSq SINE Alu -6 307 1 2591 84 0 0 chr9 38824723 38825031 -103446413 - AluSq SINE Alu -5 308 1 230 287 23 23 chr9 38825902 38825989 -103445455 - MIR SINE MIR -95 113 27 380 275 84 51 chr9 38826842 38827020 -103444424 + MIR3 SINE MIR 20 203 -5 314 214 131 0 chr9 38827259 38827343 -103444101 - MER5A DNA MER1_type -80 109 15 * 638 241 12 31 chr9 38827337 38827438 -103444006 + MER5B DNA MER1_type 20 118 -60 2391 98 0 6 chr9 38827438 38827753 -103443691 - AluSp SINE Alu 0 313 1 638 241 12 31 chr9 38827753 38827813 -103443631 + MER5B DNA MER1_type 118 178 0 307 261 56 21 chr9 38827813 38827937 -103443507 - MIR3 SINE MIR -40 168 40 300 231 14 91 chr9 38828549 38828692 -103442752 + L2 LINE L2 3136 3267 -5 2297 115 0 0 chr9 38829238 38829533 -103441911 - AluSx SINE Alu -17 295 1 404 241 92 7 chr9 38829933 38830074 -103441370 - L2 LINE L2 -500 2814 2662 827 206 58 26 chr9 38830318 38830507 -103440937 + MLT2B3 LTR ERVL 1 195 -359 2747 207 76 2 chr9 38830533 38831113 -103440331 + MSTD-int LTR MaLR 1113 1735 0 986 192 108 45 chr9 38831113 38831441 -103440003 + MSTD LTR MaLR 1 394 -2 485 115 58 13 chr9 38831680 38831836 -103439608 + (TCCA)n Simple_repeat Simple_repeat 1 163 0 194 91 30 76 chr9 38831891 38831957 -103439487 + (TCCA)n Simple_repeat Simple_repeat 4 66 0 263 339 68 0 chr9 38831976 38832094 -103439350 - L2 LINE L2 -24 3248 3123 984 155 6 0 chr9 38833039 38833220 -103438224 + L1MB2 LINE L1 5990 6171 0 660 292 214 3 chr9 38833471 38833813 -103437631 + L3 LINE CR1 1157 1570 -7 281 238 16 0 chr9 38835073 38835136 -103436308 - MIR SINE MIR -68 140 77 1318 125 0 0 chr9 38835661 38835845 -103435599 + AluJb SINE Alu 118 301 -11 714 245 28 47 chr9 38836211 38836423 -103435021 + MIR SINE MIR 55 262 0 187 275 44 77 chr9 38836637 38836728 -103434716 - MIR SINE MIR -60 148 61 312 281 148 27 chr9 38837351 38837574 -103433870 + MIR SINE MIR 5 253 -9 2258 96 0 0 chr9 38838994 38839276 -103432168 + AluSg SINE Alu 20 301 -9 286 289 101 0 chr9 38839443 38839580 -103431864 - MIR3 SINE MIR -27 181 29 22 35 0 0 chr9 38840555 38840584 -103430860 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr9 38840810 38840847 -103430597 + GC_rich Low_complexity Low_complexity 1 37 0 210 339 23 0 chr9 38841359 38841489 -103429955 + L2 LINE L2 2834 2966 -306 753 189 20 0 chr9 38841914 38842062 -103429382 + MER7A DNA MER2_type 16 164 -182 872 94 14 58 chr9 38842106 38842244 -103429200 + FLAM_C SINE Alu 1 132 -11 297 0 0 0 chr9 38842750 38842783 -103428661 + (TG)n Simple_repeat Simple_repeat 2 34 0 2029 105 36 4 chr9 38842783 38843059 -103428385 - AluSx SINE Alu -27 285 1 367 237 50 22 chr9 38843067 38843206 -103428238 - L1MEc LINE L1 -4000 2396 2254 2115 115 0 35 chr9 38843210 38843523 -103427921 - AluSx SINE Alu -10 302 1 267 301 31 25 chr9 38843528 38843724 -103427720 + L1M4 LINE L1 2683 2879 -3267 1839 163 3 43 chr9 38843787 38844112 -103427332 + AluJo SINE Alu 1 312 0 318 357 32 45 chr9 38844119 38844276 -103427168 + MIR SINE MIR 12 166 -96 727 176 84 0 chr9 38844281 38844423 -103427021 - FRAM SINE Alu -12 154 1 2278 113 0 3 chr9 38844635 38844945 -103426499 + AluSx SINE Alu 2 310 -2 2356 107 0 0 chr9 38845500 38845798 -103425646 - AluSg SINE Alu -12 298 1 1829 176 7 10 chr9 38845976 38846277 -103425167 + AluJo SINE Alu 1 300 -12 2081 156 0 0 chr9 38846290 38846591 -103424853 - AluSx SINE Alu -11 301 1 2346 96 0 40 chr9 38846755 38847079 -103424365 - AluSx SINE Alu -1 311 1 23 33 0 0 chr9 38847091 38847121 -103424323 + AT_rich Low_complexity Low_complexity 1 30 0 368 241 80 70 chr9 38847393 38847580 -103423864 + L1M4 LINE L1 3120 3308 -2838 1501 106 4 31 chr9 38847693 38847950 -103423494 + AluSq SINE Alu 84 313 0 1149 178 6 132 chr9 38847953 38848295 -103423149 + AluJb SINE Alu 2 300 -2 445 301 89 42 chr9 38848298 38848823 -103422621 + L1M4 LINE L1 3856 4405 -1741 419 235 62 31 chr9 38849439 38849601 -103421843 + LTR33 LTR ERVL 1 167 -354 748 192 34 23 chr9 38849627 38849804 -103421640 + LTR33 LTR ERVL 343 521 0 2018 137 29 10 chr9 38849818 38850124 -103421320 - AluJb SINE Alu 0 312 1 199 299 80 43 chr9 38851764 38851951 -103419493 + L2 LINE L2 2889 3082 -190 545 257 68 33 chr9 38852141 38852471 -103418973 + MLT1I LTR MaLR 1 365 -44 1129 135 0 56 chr9 38852771 38852949 -103418495 - AluSc SINE Alu -13 296 129 26 0 0 0 chr9 38853047 38853073 -103418371 + AT_rich Low_complexity Low_complexity 1 26 0 826 159 0 0 chr9 38854894 38855026 -103416418 + FLAM_C SINE Alu 1 132 -1 374 308 77 7 chr9 38855404 38855547 -103415897 + MIR3 SINE MIR 40 192 -16 456 309 63 45 chr9 38856551 38856774 -103414670 + MIR SINE MIR 9 235 -27 433 239 89 18 chr9 38857077 38857211 -103414233 + MIR SINE MIR 2 153 -55 2570 47 0 3 chr9 38857249 38857545 -103413899 - AluY SINE Alu -16 295 1 27 0 0 0 chr9 38857550 38857577 -103413867 + AT_rich Low_complexity Low_complexity 1 27 0 571 300 52 26 chr9 38857664 38857897 -103413547 + L2 LINE L2 3075 3313 0 2383 85 3 0 chr9 38859503 38859797 -103411647 - AluSg SINE Alu -15 295 1 2416 73 7 0 chr9 38861071 38861372 -103410072 + AluSp SINE Alu 1 303 -10 21 36 0 0 chr9 38861674 38861702 -103409742 + AT_rich Low_complexity Low_complexity 1 28 0 327 306 12 12 chr9 38862053 38862138 -103409306 + L2 LINE L2 3210 3294 -19 2199 109 0 0 chr9 38862155 38862465 -103408979 - AluSx SINE Alu 0 310 1 1812 132 30 0 chr9 38862629 38862919 -103408525 - AluSx SINE Alu 0 306 9 649 233 117 49 chr9 38862971 38863194 -103408250 - L1MC/D LINE L1 -2183 5625 5388 1157 280 78 24 chr9 38863194 38863619 -103407825 + MLT1J2 LTR MaLR 1 448 -2 354 198 81 0 chr9 38863624 38863710 -103407734 - L1MC/D LINE L1 -2419 5389 5297 325 309 105 69 chr9 38864696 38865000 -103406444 + L2 LINE L2 2953 3267 -5 1511 79 0 10 chr9 38865353 38865556 -103405888 - AluY SINE Alu -8 303 103 2251 100 3 3 chr9 38865804 38866105 -103405339 + AluSp SINE Alu 1 301 -12 443 283 18 0 chr9 38867181 38867294 -103404150 - MIR3 SINE MIR 0 208 94 1889 163 3 0 chr9 38867642 38867936 -103403508 - AluJb SINE Alu -17 295 1 523 254 106 64 chr9 38868901 38869137 -103402307 + MIR SINE MIR 17 262 0 2287 89 0 54 chr9 38869874 38870190 -103401254 - AluSg SINE Alu -11 299 1 2500 69 0 7 chr9 38870371 38870675 -103400769 - AluY SINE Alu -9 302 1 21 0 0 0 chr9 38870684 38870705 -103400739 + AT_rich Low_complexity Low_complexity 1 21 0 24 35 0 53 chr9 38870934 38870960 -103400484 + AT_rich Low_complexity Low_complexity 1 27 -27 2229 114 0 10 chr9 38870960 38871257 -103400187 + AluSq SINE Alu 1 294 -19 24 35 0 53 chr9 38871257 38871287 -103400157 + AT_rich Low_complexity Low_complexity 27 54 0 2201 68 11 0 chr9 38871388 38871668 -103399776 - AluY SINE Alu -28 283 1 261 241 60 17 chr9 38872101 38872217 -103399227 - L1ME4a LINE L1 -1 6120 6000 553 209 58 22 chr9 38872644 38872783 -103398661 - L2 LINE L2 0 3313 3170 2204 110 3 0 chr9 38872791 38873082 -103398362 + AluSx SINE Alu 1 292 -20 1211 115 52 0 chr9 38873092 38873266 -103398178 + AluSg/x SINE Alu 130 312 0 225 100 0 0 chr9 38873266 38873316 -103398128 - LTR66 LTR ERVL -167 443 394 358 318 47 0 chr9 38873719 38873826 -103397618 - MIR3 SINE MIR -15 193 82 267 244 42 67 chr9 38873975 38874094 -103397350 + MLT1J LTR MaLR 37 152 -359 273 196 54 0 chr9 38874207 38874263 -103397181 + MLT1J LTR MaLR 312 370 -141 2240 101 0 3 chr9 38874628 38874926 -103396518 - AluY SINE Alu -14 297 1 2214 88 48 0 chr9 38876349 38876644 -103394800 + AluSc SINE Alu 1 309 0 688 249 21 51 chr9 38877578 38877815 -103393629 - L1ME2 LINE L1 -1 6163 5934 1265 152 18 36 chr9 38877815 38878039 -103393405 + AluJo SINE Alu 1 220 -92 1372 166 49 0 chr9 38878063 38878328 -103393116 - Charlie1b DNA MER1_type -105 418 141 1955 151 0 0 chr9 38878328 38878654 -103392790 - AluJb SINE Alu 0 328 3 1332 238 203 28 chr9 38878656 38879237 -103392207 - L1ME3 LINE L1 -113 6049 5367 5535 125 22 58 chr9 38879246 38879630 -103391814 - L1MA8 LINE L1 -3 6288 5905 2439 232 26 80 chr9 38879630 38880247 -103391197 - L1PB3 LINE L1 -217 5937 5288 2360 103 0 13 chr9 38880247 38880558 -103390886 - AluSx SINE Alu -5 307 1 2439 232 26 80 chr9 38880558 38880655 -103390789 - L1PB3 LINE L1 -866 5288 5187 195 42 0 0 chr9 38880655 38880679 -103390765 + (TG)n Simple_repeat Simple_repeat 1 24 0 2439 232 26 80 chr9 38880679 38881029 -103390415 - L1PB3 LINE L1 -967 5187 4820 2252 85 3 3 chr9 38881029 38881345 -103390099 - AluSq SINE Alu 0 316 1 1750 153 14 20 chr9 38881353 38881512 -103389932 - AluJb SINE Alu -20 292 134 2353 74 27 17 chr9 38881512 38881811 -103389633 - AluSq SINE Alu -11 302 1 1750 153 14 20 chr9 38881811 38881945 -103389499 - AluJb SINE Alu -178 134 1 2439 232 26 80 chr9 38881945 38882008 -103389436 - L1PB3 LINE L1 -1246 4908 4843 1138 273 94 0 chr9 38881999 38882394 -103389050 - L1MEc LINE L1 -2369 3711 3280 * 675 143 20 0 chr9 38882396 38882494 -103388950 - AluSg/x SINE Alu -20 289 190 2842 256 160 36 chr9 38882494 38884449 -103386995 - L1MEc LINE L1 -3233 2847 525 745 324 39 32 chr9 38884603 38884908 -103386536 - L1MEc LINE L1 -5617 453 143 2162 100 0 62 chr9 38884908 38885229 -103386215 + AluSx SINE Alu 1 301 -11 745 324 39 32 chr9 38885229 38885364 -103386080 - L1MEc LINE L1 -5927 143 10 247 358 37 0 chr9 38885703 38885837 -103385607 + L2 LINE L2 2069 2207 -1107 27 92 0 0 chr9 38887080 38887156 -103384288 + AT_rich Low_complexity Low_complexity 1 76 0 556 248 0 8 chr9 38887222 38887339 -103384105 - L2 LINE L2 -1 3312 3197 1761 160 51 0 chr9 38887418 38887595 -103383849 - AluSx SINE Alu -4 308 109 333 0 0 0 chr9 38887595 38887632 -103383812 + (TG)n Simple_repeat Simple_repeat 2 38 0 1761 160 51 0 chr9 38887632 38887747 -103383697 - AluSx SINE Alu -203 109 1 2659 89 29 0 chr9 38887764 38888114 -103383330 - MER46B DNA MER2_type -1 235 1 2159 102 3 14 chr9 38888570 38888863 -103382581 - AluSx SINE Alu -22 290 1 201 259 0 56 chr9 38889454 38889508 -103381936 + L2 LINE L2 3258 3308 -5 4068 59 0 0 chr9 38889946 38890424 -103381020 - L1PA7 LINE L1 0 6154 5677 1971 56 342 146 chr9 38890826 38891312 -103380132 + LTR12 LTR ERV1 1 581 -133 1568 168 33 36 chr9 38891852 38892155 -103379289 - AluJo SINE Alu -5 307 6 1718 191 3 0 chr9 38892538 38892826 -103378618 - AluJo SINE Alu -23 289 1 398 114 14 0 chr9 38892838 38892908 -103378536 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 2064 115 4 0 chr9 38892908 38893187 -103378257 - AluSx SINE Alu -32 280 1 1763 171 20 3 chr9 38893187 38893486 -103377958 - AluSx SINE Alu -8 304 1 581 293 18 66 chr9 38893513 38893848 -103377596 - L1ME LINE L1 -302 5819 5501 470 248 58 0 chr9 38894502 38894623 -103376821 + MER20 DNA MER1_type 89 216 -3 209 116 0 23 chr9 38894669 38894712 -103376732 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 1488 189 89 0 chr9 38895140 38895410 -103376034 + AluJb SINE Alu 1 294 -18 330 26 0 0 chr9 38895411 38895450 -103375994 + (GA)n Simple_repeat Simple_repeat 1 39 0 2314 94 3 0 chr9 38895750 38896048 -103375396 - AluSx SINE Alu -13 299 1 210 293 76 86 chr9 38896354 38896552 -103374892 + L2 LINE L2 2895 3090 -182 278 338 144 19 chr9 38897414 38897574 -103373870 - MER5A DNA MER1_type -5 184 5 269 299 9 28 chr9 38897576 38897683 -103373761 - MIR SINE MIR -64 144 40 446 208 10 0 chr9 38898014 38898110 -103373334 - L1ME3A LINE L1 -312 5858 5762 2252 85 3 0 chr9 38898405 38898739 -103372705 + AluSp SINE Alu 1 335 0 1383 173 0 9 chr9 38898965 38899185 -103372259 + MER20 DNA MER1_type 2 219 0 302 243 14 14 chr9 38899323 38899393 -103372051 - MIR3 SINE MIR -41 167 98 614 183 0 10 chr9 38899417 38899521 -103371923 + MER58A DNA MER1_type 1 103 -4 23 0 0 0 chr9 38899521 38899544 -103371900 + AT_rich Low_complexity Low_complexity 1 23 0 290 152 0 0 chr9 38899572 38899618 -103371826 - FLAM SINE Alu -7 126 81 510 221 48 62 chr9 38899655 38899800 -103371644 + MER58A DNA MER1_type 82 224 0 277 297 0 0 chr9 38900954 38901018 -103370426 + MER63 DNA MER1_type 997 1060 -1 233 291 0 0 chr9 38902338 38902393 -103369051 + MLT1H LTR MaLR 1 55 -494 905 252 123 36 chr9 38902489 38902791 -103368653 + MLT1H LTR MaLR 209 536 -13 315 316 146 59 chr9 38903026 38903279 -103368165 + L2 LINE L2 2995 3269 -3 317 284 0 14 chr9 38903577 38903651 -103367793 + MER63 DNA MER1_type 675 747 -315 313 183 0 73 chr9 38903632 38903714 -103367730 + MER63 DNA MER1_type 970 1045 -16 * 376 355 56 28 chr9 38903937 38904261 -103367183 - L2 LINE L2 -558 2756 2424 486 46 0 0 chr9 38904321 38904386 -103367058 + (TG)n Simple_repeat Simple_repeat 2 66 0 184 344 73 10 chr9 38904532 38904628 -103366816 - L2 LINE L2 -1037 2277 2176 404 320 147 0 chr9 38906854 38907004 -103364440 - L3 LINE CR1 -3 1574 1403 21 0 0 0 chr9 38907372 38907393 -103364051 + AT_rich Low_complexity Low_complexity 1 21 0 524 272 100 60 chr9 38907549 38908117 -103363327 - L1MEc LINE L1 -4729 1581 1037 1747 94 5 5 chr9 38908117 38908341 -103363103 - AluSx SINE Alu -88 224 1 524 272 100 60 chr9 38908341 38909105 -103362339 - L1MEc LINE L1 -5273 1037 102 24 53 0 0 chr9 38912031 38912069 -103359375 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr9 38912494 38912521 -103358923 + (T)n Simple_repeat Simple_repeat 1 27 0 343 282 81 24 chr9 38912664 38912788 -103358656 - MIR SINE MIR -38 224 94 2291 100 0 0 chr9 38914605 38914895 -103356549 - AluSx SINE Alu -20 292 3 2028 136 7 0 chr9 38914972 38915266 -103356178 + AluSx SINE Alu 1 296 -16 2240 127 3 0 chr9 38915289 38915589 -103355855 + AluSq SINE Alu 1 301 -12 244 239 0 0 chr9 38916190 38916236 -103355208 - L2 LINE L2 -17 3255 3210 405 0 0 0 chr9 38916311 38916356 -103355088 + (TG)n Simple_repeat Simple_repeat 2 46 0 313 288 234 46 chr9 38916850 38917281 -103354163 - L2 LINE L2 -950 2364 1853 806 164 8 0 chr9 38917333 38917461 -103353983 + FLAM_C SINE Alu 1 129 -4 2305 101 3 0 chr9 38918278 38918575 -103352869 - AluSx SINE Alu -14 298 1 6929 11 1 0 chr9 38919035 38919905 -103351539 - L1PA3 LINE L1 0 6155 5333 1751 178 0 10 chr9 38919905 38920214 -103351230 - AluJb SINE Alu -6 306 1 481 131 12 0 chr9 38920859 38920943 -103350501 + L1MC5 LINE L1 7155 7239 -722 894 182 53 5 chr9 38920993 38921180 -103350264 - MER3 DNA MER1_type -13 196 1 1258 225 113 33 chr9 38921180 38921731 -103349713 + L1MC5 LINE L1 7330 7924 -37 297 177 21 52 chr9 38921735 38921831 -103349613 + GA-rich Low_complexity Low_complexity 2 94 0 777 296 12 24 chr9 38922061 38922308 -103349136 + MIR SINE MIR 5 248 -14 189 286 111 0 chr9 38922347 38922410 -103349034 + MIR3 SINE MIR 136 205 -3 28 0 0 0 chr9 38923030 38923058 -103348386 + AT_rich Low_complexity Low_complexity 1 28 0 288 222 37 102 chr9 38923096 38923204 -103348240 - L2 LINE L2 -10 3303 3203 22 0 0 0 chr9 38923231 38923253 -103348191 + AT_rich Low_complexity Low_complexity 1 22 0 2037 232 64 31 chr9 38924547 38925216 -103346228 - L1MC4 LINE L1 -18 8024 7334 842 150 0 8 chr9 38925265 38925398 -103346046 - FLAM_C SINE Alu 0 133 2 414 274 195 0 chr9 38925603 38925716 -103345728 - L2 LINE L2 -5 3267 3133 309 307 18 0 chr9 38925720 38925834 -103345610 - MIR SINE MIR 0 262 147 447 309 198 26 chr9 38925862 38926483 -103344961 - L2 LINE L2 -946 2368 1641 3218 253 162 21 chr9 38926634 38926707 -103344737 - L2 LINE L2 -51 3262 3201 231 114 0 0 chr9 38926707 38926742 -103344702 + (TA)n Simple_repeat Simple_repeat 2 36 0 3218 253 162 21 chr9 38926742 38927989 -103343455 - L2 LINE L2 -112 3201 1769 1652 243 62 74 chr9 38928029 38928136 -103343308 + MER21B LTR ERV1 24 131 -732 1137 121 167 5 chr9 38928136 38928334 -103343110 - MER30 DNA MER1_type 0 230 1 1652 243 62 74 chr9 38928334 38928946 -103342498 + MER21B LTR ERV1 131 735 -128 243 371 34 0 chr9 38929006 38929095 -103342349 - L2 LINE L2 -44 3228 3137 244 301 83 38 chr9 38929158 38929291 -103342153 - L2 LINE L2 -1903 1411 1273 312 27 0 0 chr9 38929586 38929623 -103341821 + (TA)n Simple_repeat Simple_repeat 1 37 0 1857 128 49 21 chr9 38930135 38930423 -103341021 - AluSx SINE Alu -16 296 1 283 257 97 9 chr9 38930940 38931053 -103340391 - L1ME4a LINE L1 -30 6091 5969 24 0 0 0 chr9 38931768 38931792 -103339652 + AT_rich Low_complexity Low_complexity 1 24 0 192 125 0 0 chr9 38932206 38932238 -103339206 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 35 71 0 0 chr9 38932332 38932402 -103339042 + AT_rich Low_complexity Low_complexity 1 70 0 335 239 58 97 chr9 38932560 38932715 -103338729 - L1MC4 LINE L1 -43 7999 7851 180 315 54 45 chr9 38932769 38932880 -103338564 + L2 LINE L2 2675 2786 -528 4951 152 31 22 chr9 38933239 38934408 -103337036 + L1P5 LINE L1 4119 5327 -824 2377 58 3 49 chr9 38934408 38934734 -103336710 + AluY SINE Alu 1 311 0 4951 152 31 22 chr9 38934734 38935196 -103336248 + L1P5 LINE L1 5327 5783 -368 2939 81 50 20 chr9 38935197 38935282 -103336162 + L1PB1 LINE L1 5695 5776 -375 378 0 0 0 chr9 38935282 38935324 -103336120 + (CA)n Simple_repeat Simple_repeat 2 43 0 2939 81 50 20 chr9 38935324 38935680 -103335764 + L1PB1 LINE L1 5776 6149 -2 262 266 38 13 chr9 38936650 38936729 -103334715 + L2 LINE L2 3229 3309 -4 916 254 195 49 chr9 38936834 38937671 -103333773 + L2 LINE L2 2359 3312 -1 21 0 0 0 chr9 38937706 38937727 -103333717 + AT_rich Low_complexity Low_complexity 1 21 0 204 260 0 20 chr9 38938608 38938658 -103332786 - MIR3 SINE MIR -11 197 149 1119 128 6 0 chr9 38938727 38938906 -103332538 - L1MB7 LINE L1 -9 6175 5996 191 61 30 0 chr9 38938920 38938953 -103332491 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 264 268 21 31 chr9 38938953 38939050 -103332394 + MER103 DNA DNA 61 156 -10 242 262 148 57 chr9 38939070 38939192 -103332252 - MIR SINE MIR -42 220 88 277 286 13 26 chr9 38939284 38939361 -103332083 - MIR3 SINE MIR -52 156 81 1606 136 73 7 chr9 38939445 38939718 -103331726 - AluJb SINE Alu -21 291 1 21 0 0 0 chr9 38939726 38939747 -103331697 + AT_rich Low_complexity Low_complexity 1 21 0 412 287 99 89 chr9 38940268 38940924 -103330520 + L1M2 LINE L1 775 1415 -5434 300 244 87 9 chr9 38941024 38941139 -103330305 - MIR3 SINE MIR -9 199 76 27 0 0 0 chr9 38941360 38941387 -103330057 + AT_rich Low_complexity Low_complexity 1 27 0 1731 139 0 7 chr9 38941395 38941668 -103329776 - AluJb SINE Alu -41 271 1 403 220 114 23 chr9 38941996 38942128 -103329316 - L1MC5 LINE L1 -309 7652 7509 919 248 71 24 chr9 38942220 38942514 -103328930 - MER93a LTR ERV1 -3 399 92 804 146 0 29 chr9 38942700 38942837 -103328607 + FLAM_C SINE Alu 1 133 0 1551 94 0 0 chr9 38942966 38943157 -103328287 + AluSg SINE Alu 1 191 -119 1585 152 27 0 chr9 38943166 38943429 -103328015 - L1MC1 LINE L1 -5 6328 6059 225 211 0 0 chr9 38943429 38943481 -103327963 + Charlie5 DNA MER1_type 2542 2593 -19 1619 186 0 17 chr9 38943511 38943806 -103327638 - AluJo SINE Alu -22 290 1 420 330 81 25 chr9 38943927 38944285 -103327159 + L2 LINE L2 2774 3153 -160 24 0 0 0 chr9 38944293 38944317 -103327127 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr9 38944419 38944444 -103327000 + (CA)n Simple_repeat Simple_repeat 2 26 0 2114 130 0 13 chr9 38944447 38944748 -103326696 - AluJb SINE Alu -15 297 1 21 82 0 0 chr9 38946364 38946413 -103325031 + AT_rich Low_complexity Low_complexity 1 49 0 3640 119 37 54 chr9 38946851 38947531 -103323913 + L1MC1 LINE L1 5660 6327 -6 264 338 0 65 chr9 38948789 38948899 -103322545 + MER5A DNA MER1_type 45 144 -45 2104 134 0 49 chr9 38948899 38949227 -103322217 - AluSx SINE Alu 0 312 1 264 338 0 65 chr9 38949227 38949270 -103322174 + MER5A DNA MER1_type 144 188 -1 1357 174 29 54 chr9 38949365 38949482 -103321962 + AluJo SINE Alu 5 123 -189 270 0 0 0 chr9 38949482 38949512 -103321932 + (TA)n Simple_repeat Simple_repeat 2 31 0 1357 174 29 54 chr9 38949512 38949527 -103321917 + AluJo SINE Alu 123 137 -175 770 0 11 0 chr9 38949527 38949617 -103321827 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 1357 174 29 54 chr9 38949617 38949799 -103321645 + AluJo SINE Alu 137 312 0 328 264 54 139 chr9 38949825 38950212 -103321232 - L1 LINE L1 -1699 4447 4094 2003 197 32 43 chr9 38950321 38950365 -103321079 - L1ME1 LINE L1 -5 6161 6118 2184 72 21 3 chr9 38950365 38950655 -103320789 + AluY SINE Alu 1 295 -16 2003 197 32 43 chr9 38950655 38951139 -103320305 - L1ME1 LINE L1 -48 6118 5639 1032 221 62 21 chr9 38951201 38951540 -103319904 - MER74B LTR ERVL -59 563 211 297 170 0 0 chr9 38951575 38951628 -103319816 - MER74B LTR ERVL -569 53 1 1664 207 32 29 chr9 38951651 38952358 -103319086 - L1ME1 LINE L1 -547 5619 4911 1815 159 10 14 chr9 38953100 38953390 -103318054 - AluJb SINE Alu -23 289 1 411 247 51 25 chr9 38953635 38953793 -103317651 + L1MEd LINE L1 71 232 -5887 466 257 0 20 chr9 38953921 38954022 -103317422 + MER5A DNA MER1_type 4 102 -87 351 305 13 47 chr9 38954357 38954510 -103316934 - MIR SINE MIR -58 150 2 2088 120 74 86 chr9 38954636 38955069 -103316375 + MSTA LTR MaLR 1 428 0 242 297 45 27 chr9 38955524 38955635 -103315809 + MIR3 SINE MIR 88 200 -8 305 341 78 8 chr9 38956580 38956709 -103314735 - L2 LINE L2 -10 3262 3125 950 191 0 34 chr9 38956794 38956972 -103314472 + AluJ SINE Alu 1 172 -140 252 184 0 198 chr9 38956987 38957204 -103314240 + LTR38B LTR ERV1 10 183 -427 2298 85 13 3 chr9 38957531 38957836 -103313608 + AluY SINE Alu 1 308 -3 225 0 0 0 chr9 38957836 38957861 -103313583 + (CCA)n Simple_repeat Simple_repeat 1 25 0 803 166 0 14 chr9 38958026 38958165 -103313279 + AluJ SINE Alu 167 303 -9 224 295 57 19 chr9 38958854 38958959 -103312485 - L3 LINE CR1 -16 1561 1453 2303 128 12 0 chr9 38958959 38959294 -103312150 - MER47A DNA MER2_type 0 366 28 1576 151 34 34 chr9 38959439 38959730 -103311714 - AluJo SINE Alu -20 292 2 2157 123 0 3 chr9 38959740 38960042 -103311402 - AluSx SINE Alu -11 301 1 1243 346 67 43 chr9 38960581 38961541 -103309903 + ERVL LTR ERVL 1231 2213 -3551 1449 180 119 58 chr9 38961915 38962259 -103309185 + MLT1A1 LTR MaLR 1 365 0 2523 118 120 5 chr9 38962927 38963310 -103308134 - MSTA LTR MaLR 0 428 2 256 300 22 0 chr9 38964742 38964832 -103306612 + L1ME LINE L1 4 95 -5975 3054 157 6 2 chr9 38965700 38966183 -103305261 + MER31A LTR ERV1 1 485 0 346 222 0 0 chr9 38966456 38966519 -103304925 - L2 LINE L2 -10 3303 3241 189 0 0 0 chr9 38966562 38966583 -103304861 + (CAT)n Simple_repeat Simple_repeat 3 23 0 597 274 152 22 chr9 38966612 38966882 -103304562 - L3 LINE CR1 -27 1550 1246 1316 204 19 0 chr9 38967495 38967760 -103303684 + L1MA4 LINE L1 6022 6291 -9 23 0 0 0 chr9 38967799 38967822 -103303622 + AT_rich Low_complexity Low_complexity 1 23 0 183 271 0 0 chr9 38968244 38968303 -103303141 + CT-rich Low_complexity Low_complexity 4 62 0 301 341 94 13 chr9 38968360 38968659 -103302785 - L3 LINE CR1 -652 925 603 247 314 212 7 chr9 38968654 38968791 -103302653 - L2 LINE L2 0 3272 3108 * 2808 99 90 11 chr9 38968848 38969060 -103302384 - Tigger2 DNA MER2_type 0 2718 2524 1671 169 7 10 chr9 38969060 38969335 -103302109 + AluSx SINE Alu 2 276 -36 360 0 0 0 chr9 38969335 38969375 -103302069 + (TC)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr9 38969374 38969398 -103302046 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 1671 169 7 10 chr9 38969375 38969417 -103302027 + AluSx SINE Alu 276 295 -17 2808 99 90 11 chr9 38969417 38969648 -103301796 - Tigger2 DNA MER2_type -194 2524 2240 310 353 42 32 chr9 38970948 38971138 -103300306 + L3 LINE CR1 1259 1450 -127 1541 226 95 15 chr9 38971210 38971673 -103299771 - MLT1E LTR MaLR -2 591 1 363 354 43 6 chr9 38972916 38973077 -103298367 + L3 LINE CR1 1367 1533 -44 360 0 0 0 chr9 38975898 38975938 -103295506 + (TG)n Simple_repeat Simple_repeat 2 41 0 2875 101 36 10 chr9 38975949 38976363 -103295081 - L1MA3 LINE L1 0 6305 5881 757 170 91 140 chr9 38976363 38976669 -103294775 - L1MC5 LINE L1 -135 7826 7555 3014 80 0 29 chr9 38976669 38977055 -103294389 + THE1C LTR MaLR 1 375 0 757 170 91 140 chr9 38977055 38977278 -103294166 - L1MC5 LINE L1 -406 7555 7323 885 225 52 19 chr9 38977308 38977604 -103293840 - L1MC5 LINE L1 -1090 6871 6625 287 123 82 0 chr9 38978367 38978489 -103292955 + (TA)n Simple_repeat Simple_repeat 2 133 0 340 80 80 0 chr9 38978597 38978697 -103292747 + (TA)n Simple_repeat Simple_repeat 1 108 0 21 0 0 0 chr9 38978773 38978794 -103292650 + AT_rich Low_complexity Low_complexity 1 21 0 412 310 29 23 chr9 38978848 38979019 -103292425 - L2 LINE L2 0 3313 3142 1127 259 112 40 chr9 38979051 38979261 -103292183 + HAL1 LINE L1 23 217 -2290 1917 190 87 11 chr9 38979261 38979629 -103291815 - MSTD LTR MaLR 0 396 1 1127 259 112 40 chr9 38979629 38979892 -103291552 + HAL1 LINE L1 217 530 -1977 1032 220 111 85 chr9 38979892 38980021 -103291423 + HAL1 LINE L1 1446 1570 -937 1376 211 128 21 chr9 38980021 38980356 -103291088 + MLT2D LTR ERVL 1 381 -33 354 45 0 0 chr9 38980356 38980400 -103291044 + (CA)n Simple_repeat Simple_repeat 2 45 0 1376 211 128 21 chr9 38980400 38980438 -103291006 + MLT2D LTR ERVL 381 414 0 1032 220 111 85 chr9 38980438 38980550 -103290894 + HAL1 LINE L1 1570 1678 -829 2077 119 7 7 chr9 38980550 38980835 -103290609 + AluSx SINE Alu 13 297 -15 1032 220 111 85 chr9 38980835 38981015 -103290429 + HAL1 LINE L1 1678 1879 -628 3168 158 48 79 chr9 38981469 38981657 -103289787 + L1PB4 LINE L1 5455 5647 -509 1514 119 0 0 chr9 38981657 38981859 -103289585 - AluSq SINE Alu -13 300 99 3168 158 48 79 chr9 38981859 38982381 -103289063 + L1PB4 LINE L1 5647 6143 -13 1226 217 49 48 chr9 38982491 38982971 -103288473 - MLT1E3 LTR MaLR 0 626 77 326 284 24 71 chr9 38983040 38983251 -103288193 + L1ME3 LINE L1 5961 6161 -1 1753 177 7 0 chr9 38984889 38985172 -103286272 + AluJo SINE Alu 1 285 -27 24 0 0 0 chr9 38985172 38985196 -103286248 + AT_rich Low_complexity Low_complexity 1 24 0 401 267 57 126 chr9 38987663 38987736 -103283708 + HAL1 LINE L1 844 920 -1587 2029 91 0 15 chr9 38987736 38988010 -103283434 + AluSx SINE Alu 28 297 -15 401 267 57 126 chr9 38988010 38988266 -103283178 + HAL1 LINE L1 920 1128 -1379 535 45 0 0 chr9 38988266 38988332 -103283112 - L1PA11 LINE L1 -5 6169 6104 401 267 57 126 chr9 38988332 38988511 -103282933 + HAL1 LINE L1 1128 1318 -1189 3348 110 8 6 chr9 38988520 38988994 -103282450 + L1PB1 LINE L1 5677 6151 0 319 312 48 30 chr9 38989124 38989411 -103282033 + HAL1b LINE L1 366 656 -692 349 374 0 24 chr9 38989640 38989763 -103281681 + L2 LINE L2 3153 3272 0 937 212 82 108 chr9 38989933 38990128 -103281316 - L1MC5 LINE L1 -33 7928 7729 1914 100 93 0 chr9 38990128 38990397 -103281047 - AluSg SINE Alu -15 295 2 937 212 82 108 chr9 38990397 38990451 -103280993 - L1MC5 LINE L1 -232 7729 7675 1880 162 0 3 chr9 38990451 38990747 -103280697 - AluJo SINE Alu -1 311 17 937 212 82 108 chr9 38990747 38990846 -103280598 - L1MC5 LINE L1 -286 7675 7575 2225 92 3 3 chr9 38990846 38991139 -103280305 - AluSx SINE Alu -19 293 1 2427 83 6 6 chr9 38991148 38991460 -103279984 - AluSp SINE Alu -1 312 1 937 212 82 108 chr9 38991460 38991727 -103279717 - L1MC5 LINE L1 -394 7567 7316 2342 111 0 0 chr9 38991727 38992034 -103279410 - AluSx SINE Alu 0 312 6 937 212 82 108 chr9 38992034 38992055 -103279389 - L1MC5 LINE L1 -645 7316 7296 1151 259 106 101 chr9 38992075 38992817 -103278627 - L1MC4a LINE L1 -945 6863 6113 1553 209 0 38 chr9 38992817 38993133 -103278311 + AluJb SINE Alu 1 304 -8 1151 259 106 101 chr9 38993133 38993420 -103278024 - L1MC4a LINE L1 -1695 6113 5829 209 352 172 0 chr9 38993594 38993739 -103277705 + MIR3 SINE MIR 32 201 -7 543 293 44 105 chr9 38994216 38994578 -103276866 + L2 LINE L2 2932 3271 -1 1118 248 20 106 chr9 38994584 38995092 -103276352 + L1ME3A LINE L1 5622 6085 -85 2149 111 23 13 chr9 38995127 38995433 -103276011 - AluSc SINE Alu 0 309 1 252 265 26 68 chr9 38997041 38997158 -103274286 + L3 LINE CR1 1353 1464 -113 1897 160 3 0 chr9 38997837 38998161 -103273283 + AluJo SINE Alu 1 312 0 4158 233 67 55 chr9 38998161 38999528 -103271916 + L1MDa LINE L1 1098 2481 -4059 1614 206 82 3 chr9 38999529 38999859 -103271585 - MLT1A1 LTR MaLR 0 365 10 821 176 27 0 chr9 38999867 39000074 -103271370 + L1MDa LINE L1 2479 2650 -3890 560 198 86 37 chr9 39000062 39000249 -103271195 + L1MDa LINE L1 4270 4465 -2075 * 2026 243 20 40 chr9 39000244 39000852 -103270592 + L1MDa LINE L1 4794 5389 -1151 1854 293 63 60 chr9 39000889 39001852 -103269592 + L1M2b LINE L1 14 979 -6230 9407 193 21 9 chr9 39001889 39005303 -103266141 + L1M2b LINE L1 1701 5155 -2053 804 199 31 5 chr9 39005305 39005496 -103265948 + L1M2b LINE L1 5326 5521 -1687 6060 157 26 30 chr9 39007050 39007764 -103263680 + L1MA5 LINE L1 4096 4812 -1488 2093 122 0 7 chr9 39007764 39008059 -103263385 + AluSx SINE Alu 1 293 -19 2355 106 0 0 chr9 39008067 39008370 -103263074 + AluSc SINE Alu 1 303 -6 6060 157 26 30 chr9 39008370 39008871 -103262573 + L1MA5 LINE L1 4819 5321 -979 2672 155 25 23 chr9 39008871 39009303 -103262141 + Tigger2a DNA MER2_type 1 433 -1 6060 157 26 30 chr9 39009303 39010253 -103261191 + L1MA5 LINE L1 5321 6261 -39 433 274 29 11 chr9 39010261 39010436 -103261008 + L1M2b LINE L1 6040 6217 -991 * 3807 198 30 32 chr9 39010433 39011311 -103260133 + L1MD2 LINE L1 5272 6147 -212 424 241 18 59 chr9 39011310 39011480 -103259964 + L1MD3 LINE L1 7832 7994 -1 * 951 268 43 132 chr9 39011447 39012236 -103259208 + L1ME3A LINE L1 3891 4558 -1588 2221 103 0 0 chr9 39012236 39012554 -103258890 - AluSx SINE Alu 0 318 1 951 268 43 132 chr9 39012554 39012868 -103258576 + L1ME3A LINE L1 4558 4898 -1248 846 221 98 14 chr9 39012897 39013173 -103258271 + L1ME3A LINE L1 5664 5962 -208 237 279 52 78 chr9 39013193 39013347 -103258097 + L1ME3A LINE L1 5925 6074 -96 476 264 181 0 chr9 39013467 39013622 -103257822 + L1MC4a LINE L1 5428 5610 -2198 316 184 68 48 chr9 39013624 39013727 -103257717 + L1MC4a LINE L1 5650 5754 -2054 2228 105 3 7 chr9 39013727 39014032 -103257412 + AluSx SINE Alu 1 304 -8 784 182 58 0 chr9 39014032 39014186 -103257258 + AluSg/x SINE Alu 132 294 -16 347 250 36 89 chr9 39014186 39014354 -103257090 + L1MC4a LINE L1 5747 5905 -1903 234 205 73 69 chr9 39014594 39014685 -103256759 + MIR SINE MIR 35 122 -95 186 43 0 0 chr9 39014827 39014850 -103256594 + (CTG)n Simple_repeat Simple_repeat 1 23 0 203 182 45 0 chr9 39015525 39015569 -103255875 + G-rich Low_complexity Low_complexity 4 49 0 2233 111 13 10 chr9 39016074 39016381 -103255063 - AluSx SINE Alu -4 308 1 372 364 60 6 chr9 39016415 39016764 -103254680 - L1ME4a LINE L1 -199 5922 5555 300 27 0 0 chr9 39017108 39017145 -103254299 + (CA)n Simple_repeat Simple_repeat 1 37 0 275 287 32 0 chr9 39017233 39017327 -103254117 - MIR3 SINE MIR -21 187 91 993 209 11 0 chr9 39017969 39018156 -103253288 + MER20 DNA MER1_type 31 219 0 212 331 144 0 chr9 39018452 39018591 -103252853 + MIR SINE MIR 28 186 -76 298 307 10 0 chr9 39019508 39019609 -103251835 + MIR SINE MIR 49 150 -58 2169 133 0 0 chr9 39021574 39021874 -103249570 - AluSx SINE Alu -8 304 5 425 187 33 0 chr9 39021896 39021987 -103249457 + MER103 DNA DNA 50 143 -23 2081 94 6 82 chr9 39022025 39022355 -103249089 - AluSx SINE Alu -7 305 1 437 181 0 0 chr9 39022621 39022693 -103248751 + FLAM SINE Alu 58 129 -14 388 292 95 60 chr9 39022926 39023241 -103248203 - L3 LINE CR1 -71 1506 1181 22 0 0 0 chr9 39024547 39024569 -103246875 + AT_rich Low_complexity Low_complexity 1 22 0 357 276 20 10 chr9 39024859 39024957 -103246487 + GA-rich Low_complexity Low_complexity 2 100 0 445 236 7 7 chr9 39024977 39025121 -103246323 + GA-rich Low_complexity Low_complexity 1 144 0 3185 122 32 2 chr9 39025642 39026109 -103245335 + LTR39 LTR ERV1 1 481 -302 2144 107 0 14 chr9 39026109 39026400 -103245044 + AluSx SINE Alu 1 287 -25 7816 28 0 1 chr9 39026408 39027342 -103244102 + L1PA3 LINE L1 5222 6154 -1 37 81 0 0 chr9 39027342 39027428 -103244016 + AT_rich Low_complexity Low_complexity 1 86 0 401 140 73 207 chr9 39027435 39027585 -103243859 + LTR39 LTR ERV1 460 589 -194 2343 110 0 0 chr9 39027590 39027891 -103243553 - AluSq SINE Alu -12 301 1 1535 232 114 24 chr9 39029077 39029502 -103241942 + L1MC4 LINE L1 7449 7935 -107 351 0 0 0 chr9 39029502 39029541 -103241903 + (CA)n Simple_repeat Simple_repeat 2 40 0 1535 232 114 24 chr9 39029541 39029658 -103241786 + L1MC4 LINE L1 7935 8040 -2 681 197 0 38 chr9 39029937 39030069 -103241375 + AluJo/FLAM SINE Alu 1 127 -175 1849 173 3 3 chr9 39030079 39030379 -103241065 + AluJb SINE Alu 1 300 -12 1011 175 0 27 chr9 39030379 39030551 -103240893 - AluJb SINE Alu -11 301 133 265 318 46 31 chr9 39030551 39030641 -103240803 + L1ME LINE L1 5602 5689 -432 2530 70 0 6 chr9 39030641 39030954 -103240490 + AluY SINE Alu 1 311 0 265 318 46 31 chr9 39030954 39031058 -103240386 + L1ME LINE L1 5689 5799 -322 23 33 0 0 chr9 39031224 39031254 -103240190 + AT_rich Low_complexity Low_complexity 1 30 0 1908 152 44 0 chr9 39031270 39031567 -103239877 + AluSx SINE Alu 1 310 -2 414 233 43 0 chr9 39031777 39031893 -103239551 + L1M4 LINE L1 4747 4867 -1279 295 246 65 145 chr9 39031897 39032145 -103239299 + LTR50 LTR ERVL 1 228 -567 27 0 0 0 chr9 39032277 39032304 -103239140 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr9 39032985 39033008 -103238436 + (A)n Simple_repeat Simple_repeat 1 23 0 1131 97 0 13 chr9 39035630 39035784 -103235660 + AluSp SINE Alu 150 301 -12 1097 269 13 82 chr9 39036712 39037173 -103234271 - MLT1J LTR MaLR 0 511 83 732 133 148 7 chr9 39037174 39037309 -103234135 - MLT1A2 LTR MaLR -2 372 219 2138 113 3 0 chr9 39038127 39038440 -103233004 - AluSp SINE Alu 0 314 1 2181 69 0 4 chr9 39039866 39040127 -103231317 - AluY SINE Alu -17 294 35 858 254 83 53 chr9 39040198 39040595 -103230849 - MLT1J LTR MaLR -102 409 1 2534 148 29 12 chr9 39040748 39041167 -103230277 - MSTB LTR MaLR 0 426 1 26 50 0 0 chr9 39042247 39042287 -103229157 + AT_rich Low_complexity Low_complexity 1 40 0 1784 143 75 13 chr9 39042435 39042743 -103228701 - MER7A DNA MER2_type -1 345 21 37 0 0 0 chr9 39042959 39042996 -103228448 + AT_rich Low_complexity Low_complexity 1 37 0 2161 126 3 3 chr9 39042999 39043309 -103228135 - AluSx SINE Alu -2 310 1 804 146 26 57 chr9 39043329 39043395 -103228049 + MER53 DNA DNA 4 71 -118 2298 100 0 0 chr9 39043395 39043685 -103227759 - AluSg SINE Alu -20 290 1 804 146 26 57 chr9 39043685 39043810 -103227634 + MER53 DNA DNA 71 189 0 696 238 96 43 chr9 39044468 39044771 -103226673 + L1MC5 LINE L1 7610 7928 -33 2598 128 5 14 chr9 39044788 39045202 -103226242 + L1MB3 LINE L1 5773 6182 -1 310 43 0 0 chr9 39045406 39045452 -103225992 - L1PA4 LINE L1 0 6155 6110 1649 171 3 57 chr9 39045470 39045786 -103225658 - AluJo SINE Alu -9 303 5 190 350 40 20 chr9 39046879 39046979 -103224465 + MIR SINE MIR 8 109 -153 757 233 24 111 chr9 39046979 39047429 -103224015 - L1MC5 LINE L1 -39 7922 7512 742 255 137 26 chr9 39048813 39049107 -103222337 - L1ME4a LINE L1 -1 6120 5755 2085 125 3 3 chr9 39049107 39049410 -103222034 - AluSx SINE Alu -9 303 1 742 255 137 26 chr9 39049410 39049574 -103221870 - L1ME4a LINE L1 -366 5755 5611 775 259 203 47 chr9 39049922 39050217 -103221227 + L2 LINE L2 2248 2496 -817 2403 73 0 3 chr9 39050217 39050504 -103220940 + AluSp SINE Alu 1 286 -27 775 259 203 47 chr9 39050504 39051108 -103220336 + L2 LINE L2 2496 3313 0 2371 90 3 3 chr9 39051334 39051635 -103219809 + AluSc SINE Alu 1 301 -8 2057 129 17 7 chr9 39052319 39052621 -103218823 - AluJo SINE Alu -7 305 1 317 303 157 46 chr9 39052706 39052967 -103218477 - L3 LINE CR1 -108 1469 1180 1899 161 0 3 chr9 39053050 39053348 -103218096 + AluJb SINE Alu 1 297 -15 1460 146 28 7 chr9 39053641 39054052 -103217392 - LTR54 LTR ERV1 -5 505 1 1141 234 70 35 chr9 39054079 39054395 -103217049 - MLT1J LTR MaLR -13 498 172 2339 91 0 3 chr9 39054727 39055025 -103216419 - AluSc SINE Alu -12 297 1 2656 179 68 37 chr9 39055031 39055348 -103216096 - MER99 DNA DNA -2 826 520 633 195 132 37 chr9 39055348 39055538 -103215906 - MER63A DNA MER1_type -2 208 1 2656 179 68 37 chr9 39055538 39055836 -103215608 - MER99 DNA DNA -308 520 192 21 36 0 0 chr9 39056195 39056223 -103215221 + AT_rich Low_complexity Low_complexity 1 28 0 1600 128 9 128 chr9 39056516 39056851 -103214593 + AluJo SINE Alu 2 296 -6 366 316 0 0 chr9 39056853 39056951 -103214493 - MER99 DNA DNA -729 99 2 211 268 0 38 chr9 39057086 39057181 -103214263 + MIR SINE MIR 64 151 -62 318 221 91 0 chr9 39058006 39058083 -103213361 + LTR54 LTR ERV1 16 99 -411 525 169 78 173 chr9 39058220 39058451 -103212993 + MER57A LTR ERV1 195 403 0 180 0 0 0 chr9 39058678 39058698 -103212746 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 455 279 52 15 chr9 39058703 39058937 -103212507 - L1ME4a LINE L1 -296 5825 5643 1641 184 91 78 chr9 39059228 39059354 -103212090 - MLT1D LTR MaLR -15 490 367 1944 67 115 7 chr9 39059354 39059623 -103211821 + AluSc SINE Alu 1 298 -11 1641 184 91 78 chr9 39059623 39059980 -103211464 - MLT1D LTR MaLR -138 367 1 216 67 0 0 chr9 39060684 39060714 -103210730 + (TG)n Simple_repeat Simple_repeat 2 31 0 2303 112 3 0 chr9 39060936 39061248 -103210196 + AluSq SINE Alu 1 313 0 264 352 16 0 chr9 39061419 39061547 -103209897 - L1MC/D LINE L1 -1976 5832 5703 2197 122 0 0 chr9 39062317 39062621 -103208823 + AluSx SINE Alu 1 304 -8 198 159 0 0 chr9 39062818 39062854 -103208590 + MIR SINE MIR 116 154 -54 2037 83 61 4 chr9 39062931 39063209 -103208235 + AluY SINE Alu 1 294 -17 271 122 17 52 chr9 39063531 39063646 -103207798 + (CA)n Simple_repeat Simple_repeat 2 112 0 428 121 27 44 chr9 39063661 39063963 -103207481 + (CA)n Simple_repeat Simple_repeat 1 296 0 454 113 16 59 chr9 39063977 39064163 -103207281 + (CA)n Simple_repeat Simple_repeat 2 179 0 364 128 16 59 chr9 39064177 39064364 -103207080 + (CA)n Simple_repeat Simple_repeat 2 180 0 398 129 24 49 chr9 39064379 39064685 -103206759 + (CA)n Simple_repeat Simple_repeat 1 298 0 233 234 0 0 chr9 39064781 39064828 -103206616 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 192 152 0 0 chr9 39064850 39064883 -103206561 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 1487 205 3 24 chr9 39065330 39065665 -103205779 + AluJo SINE Alu 1 329 0 374 306 104 0 chr9 39065776 39065910 -103205534 + LTR16A LTR ERVL 301 448 -2 190 304 87 0 chr9 39068831 39068923 -103202521 - MIR SINE MIR -70 192 93 375 152 0 0 chr9 39071326 39071405 -103200039 + (TGG)n Simple_repeat Simple_repeat 3 81 0 189 0 0 0 chr9 39071581 39071602 -103199842 + (CAG)n Simple_repeat Simple_repeat 1 21 0 544 209 181 6 chr9 39072011 39072188 -103199256 + MIR SINE MIR 1 208 -54 252 261 45 27 chr9 39073450 39073561 -103197883 - MIR3 SINE MIR -15 193 81 993 47 78 0 chr9 39073885 39074013 -103197431 + MER85 DNA T2_type 1 138 -1 1919 163 20 3 chr9 39074027 39074328 -103197116 + AluJb SINE Alu 1 306 -6 287 265 128 10 chr9 39075814 39076010 -103195434 + HAL1 LINE L1 1143 1361 -1146 360 64 0 0 chr9 39076012 39076059 -103195385 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 1794 143 7 24 chr9 39076059 39076346 -103195098 - AluJb SINE Alu -30 282 1 4360 118 48 41 chr9 39076424 39077201 -103194243 + L1MC1 LINE L1 5552 6333 0 437 302 108 3 chr9 39077300 39077377 -103194067 + L1M4 LINE L1 3628 3696 -2450 2441 70 0 7 chr9 39077377 39077677 -103193767 - AluSc SINE Alu -11 298 1 437 302 108 3 chr9 39077677 39077894 -103193550 + L1M4 LINE L1 3696 3953 -2193 10203 101 34 31 chr9 39077896 39077969 -103193475 + Tigger1 DNA MER2_type 1 72 -2346 2135 128 0 16 chr9 39077969 39078275 -103193169 + AluSx SINE Alu 1 301 -11 10203 101 34 31 chr9 39078275 39079751 -103191693 + Tigger1 DNA MER2_type 72 1555 -863 2243 153 59 25 chr9 39079728 39079941 -103191503 + Tigger1 DNA MER2_type 2014 2247 -171 * 2176 106 0 33 chr9 39079941 39080242 -103191202 - AluSg SINE Alu -19 291 1 2243 153 59 25 chr9 39080242 39080420 -103191024 + Tigger1 DNA MER2_type 2247 2418 0 33 43 0 0 chr9 39080729 39080776 -103190668 + AT_rich Low_complexity Low_complexity 1 47 0 759 164 0 0 chr9 39080778 39080894 -103190550 + AluSq/x SINE Alu 3 118 -195 315 0 0 0 chr9 39080894 39080929 -103190515 + (TAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 39080939 39080960 -103190484 + AT_rich Low_complexity Low_complexity 1 21 0 1397 138 15 0 chr9 39081320 39081523 -103189921 - AluJo SINE Alu -23 289 84 2128 120 0 3 chr9 39082451 39082750 -103188694 + AluSx SINE Alu 1 298 -14 197 301 186 0 chr9 39083052 39083165 -103188279 - L2 LINE L2 0 3313 3180 1913 123 51 3 chr9 39083392 39083684 -103187760 + AluSx SINE Alu 2 307 -5 218 264 56 14 chr9 39083696 39083768 -103187676 - MIR SINE MIR -172 90 16 1359 176 66 7 chr9 39084338 39084639 -103186805 + MER33 DNA MER1_type 3 321 -3 366 312 80 11 chr9 39084808 39084996 -103186448 + MER20B DNA MER1_type 16 217 -2 2057 109 3 14 chr9 39085087 39085380 -103186064 - AluSx SINE Alu -12 300 11 264 332 45 45 chr9 39085906 39086105 -103185339 - L2 LINE L2 -685 2629 2431 290 292 62 7 chr9 39086126 39086270 -103185174 - L2 LINE L2 -1524 1790 1639 1801 139 77 0 chr9 39086458 39086615 -103184829 - AluJb SINE Alu -18 294 150 441 0 0 0 chr9 39086615 39086664 -103184780 + (TG)n Simple_repeat Simple_repeat 2 50 0 1801 139 77 0 chr9 39086664 39086779 -103184665 - AluJb SINE Alu -162 150 1 1631 172 12 75 chr9 39086884 39087216 -103184228 + AluJb SINE Alu 1 311 -1 495 259 135 82 chr9 39087216 39088161 -103183283 + L1M4 LINE L1 2271 3266 -2880 1684 187 0 44 chr9 39088163 39088484 -103182960 + AluJo SINE Alu 3 309 -3 1402 208 47 53 chr9 39088588 39088693 -103182751 + L1MB8 LINE L1 3108 3212 -2934 1958 140 62 0 chr9 39088693 39088985 -103182459 - AluSx SINE Alu -2 310 1 1402 208 47 53 chr9 39088985 39089385 -103182059 + L1MB8 LINE L1 3212 3610 -2536 5023 164 27 32 chr9 39089386 39089674 -103181770 + L1MB8 LINE L1 4866 5154 -1024 2517 68 0 0 chr9 39089674 39089985 -103181459 + AluY SINE Alu 1 311 0 5023 164 27 32 chr9 39089985 39090032 -103181412 + L1MB8 LINE L1 5154 5200 -978 2072 102 51 24 chr9 39090032 39090325 -103181119 + AluSg SINE Alu 1 301 -9 5023 164 27 32 chr9 39090325 39091248 -103180196 + L1MB8 LINE L1 5200 6116 -62 1879 127 33 4 chr9 39091248 39091555 -103179889 - AluSx SINE Alu 0 315 1 5023 164 27 32 chr9 39091555 39091618 -103179826 + L1MB8 LINE L1 6116 6178 0 263 304 81 25 chr9 39091634 39091795 -103179649 + L1M4 LINE L1 3369 3538 -2608 880 284 25 9 chr9 39091824 39092148 -103179296 + L1M4 LINE L1 3633 3961 -2185 324 0 0 0 chr9 39092216 39092252 -103179192 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr9 39092376 39092411 -103179033 + AT_rich Low_complexity Low_complexity 1 35 0 1543 253 63 54 chr9 39092419 39092512 -103178932 + L1M4 LINE L1 3951 4042 -2104 1641 175 10 41 chr9 39092512 39092854 -103178590 + AluJb SINE Alu 1 333 0 1543 253 63 54 chr9 39092854 39092892 -103178552 + L1M4 LINE L1 4042 4078 -2068 2015 104 19 0 chr9 39092892 39093162 -103178282 + AluSx SINE Alu 22 296 -16 1543 253 63 54 chr9 39093162 39093866 -103177578 + L1M4 LINE L1 4078 4796 -1350 357 82 0 0 chr9 39094075 39094124 -103177320 + (TA)n Simple_repeat Simple_repeat 2 50 0 270 266 47 64 chr9 39094221 39094454 -103176990 - HAL1 LINE L1 -1457 1050 822 966 155 25 10 chr9 39094894 39095094 -103176350 + L1 LINE L1 4406 4608 -1538 346 257 7 79 chr9 39095565 39095717 -103175727 + L1ME LINE L1 3759 3899 -2247 832 273 76 65 chr9 39095726 39096651 -103174793 + L1ME LINE L1 4490 5440 -681 1476 212 3 7 chr9 39096651 39096934 -103174510 + AluJo SINE Alu 1 282 -30 832 273 76 65 chr9 39096934 39097304 -103174140 + L1ME LINE L1 5440 5804 -317 2133 101 14 0 chr9 39097344 39097620 -103173824 + AluSq SINE Alu 1 280 -33 267 54 0 0 chr9 39097620 39097657 -103173787 + (TC)n Simple_repeat Simple_repeat 2 38 0 240 35 0 0 chr9 39097672 39097701 -103173743 + (TG)n Simple_repeat Simple_repeat 2 30 0 300 287 35 0 chr9 39097701 39097788 -103173656 + L1MC4 LINE L1 6614 6703 -1339 216 189 0 0 chr9 39097788 39097825 -103173619 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1157 168 15 113 chr9 39097855 39098237 -103173207 + L1MD3 LINE L1 983 8046 -18 1498 260 123 52 chr9 39098251 39099416 -103172028 + L1MEc LINE L1 1064 2310 -4086 2340 90 0 7 chr9 39099428 39099729 -103171715 + AluSc SINE Alu 1 299 -10 1503 227 20 0 chr9 39099743 39100086 -103171358 + L1MEc LINE L1 2402 2751 -3464 * 3030 185 42 21 chr9 39100072 39100731 -103170713 + L1M4b LINE L1 885 1557 -5302 * 3110 201 52 16 chr9 39100730 39101760 -103169684 + L1M3 LINE L1 4573 5641 -542 2547 242 68 9 chr9 39101774 39102551 -103168893 + L1M4b LINE L1 1540 2362 -4597 216 0 0 0 chr9 39102823 39102847 -103168597 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 200 308 55 0 chr9 39102898 39102989 -103168455 + MIR SINE MIR 96 191 -71 1782 134 13 56 chr9 39103122 39103427 -103168017 - AluJb SINE Alu -16 296 5 1556 101 57 91 chr9 39104123 39104260 -103167184 + AluJo SINE Alu 1 141 -171 2263 94 13 0 chr9 39104260 39104559 -103166885 + AluSp SINE Alu 1 303 -10 1556 101 57 91 chr9 39104559 39104719 -103166725 + AluJo SINE Alu 141 288 -24 1391 274 54 4 chr9 39105022 39105486 -103165958 - Charlie4a DNA MER1_type -5 503 17 337 122 41 41 chr9 39105627 39105725 -103165719 + CT-rich Low_complexity Low_complexity 5 102 0 1937 163 3 0 chr9 39106833 39107134 -103164310 + AluJo SINE Alu 6 307 -5 669 179 32 0 chr9 39107550 39107673 -103163771 - FLAM_A SINE Alu -6 127 1 2500 78 3 0 chr9 39107907 39108214 -103163230 - AluSq SINE Alu -5 308 1 3758 159 29 15 chr9 39108335 39109063 -103162381 - L1MB7 LINE L1 -19 6165 5428 1355 141 0 0 chr9 39109066 39109264 -103162180 - AluSg/x SINE Alu 0 310 113 2730 143 14 53 chr9 39109368 39109396 -103162048 - MER34C LTR ERV1 -66 519 491 1822 143 10 27 chr9 39109396 39109697 -103161747 + AluJo SINE Alu 1 296 -16 2730 143 14 53 chr9 39109697 39110008 -103161436 - MER34C LTR ERV1 -94 491 204 2179 119 7 0 chr9 39110008 39110311 -103161133 + AluSx SINE Alu 7 311 -1 2730 143 14 53 chr9 39110311 39110475 -103160969 - MER34C LTR ERV1 -381 204 35 224 320 0 26 chr9 39110581 39110659 -103160785 - L2 LINE L2 -244 3069 2994 744 199 7 7 chr9 39110866 39111002 -103160442 + AluJo SINE Alu 2 137 -175 2371 77 7 0 chr9 39111002 39111300 -103160144 + AluSg SINE Alu 1 300 -10 2605 63 0 0 chr9 39111454 39111757 -103159687 + AluSg SINE Alu 1 303 -7 2533 143 18 10 chr9 39111903 39112296 -103159148 + MSTD LTR MaLR 1 396 0 195 42 0 0 chr9 39112781 39112805 -103158639 + (T)n Simple_repeat Simple_repeat 1 24 0 2106 96 0 18 chr9 39113648 39113929 -103157515 + AluY SINE Alu 3 278 -33 408 40 0 0 chr9 39113929 39113979 -103157465 + (CA)n Simple_repeat Simple_repeat 1 50 0 369 295 171 57 chr9 39113979 39114821 -103156623 - L2 LINE L2 -20 3252 2324 1091 102 231 5 chr9 39114826 39115012 -103156432 + MER30 DNA MER1_type 3 230 0 2424 88 0 22 chr9 39115638 39115956 -103155488 + AluSx SINE Alu 1 311 -1 2069 86 38 28 chr9 39116505 39116795 -103154649 + AluSp SINE Alu 1 293 -20 1842 247 58 50 chr9 39116822 39117495 -103153949 - L1ME3A LINE L1 -65 6105 5428 1141 190 17 91 chr9 39117491 39117776 -103153668 - L1MB8 LINE L1 -1 6177 5921 * 2500 62 3 0 chr9 39117776 39118080 -103153364 + AluY SINE Alu 1 305 -6 1141 190 17 91 chr9 39118080 39118146 -103153298 - L1MB8 LINE L1 -257 5921 5852 2146 112 7 0 chr9 39118535 39118822 -103152622 - AluSp SINE Alu -24 289 1 1187 228 49 0 chr9 39118911 39119174 -103152270 + MLT1C LTR MaLR 192 467 0 1863 147 0 27 chr9 39119703 39120003 -103151441 - AluJo SINE Alu -16 296 5 2049 109 3 40 chr9 39120456 39120616 -103150828 - AluSx SINE Alu -19 293 148 2312 102 0 0 chr9 39120616 39120909 -103150535 - AluSc SINE Alu -16 293 1 2049 109 3 40 chr9 39120909 39121052 -103150392 - AluSx SINE Alu -164 148 1 971 163 249 4 chr9 39121349 39121606 -103149838 + MER33 DNA MER1_type 1 320 -4 2054 128 30 0 chr9 39121693 39121991 -103149453 + AluSx SINE Alu 1 307 -5 2065 119 10 20 chr9 39122567 39122869 -103148575 - AluSg SINE Alu -11 299 1 1157 161 5 37 chr9 39122874 39123092 -103148352 - AluJo SINE Alu -15 297 87 2090 98 49 0 chr9 39123184 39123470 -103147974 + AluSg SINE Alu 1 300 -10 233 75 25 0 chr9 39123470 39123510 -103147934 + (TA)n Simple_repeat Simple_repeat 1 41 0 2332 89 3 0 chr9 39127279 39127571 -103143873 - AluSq SINE Alu -20 293 1 1353 204 55 4 chr9 39127690 39127964 -103143480 - AluJo SINE Alu -24 288 1 24 67 0 0 chr9 39128712 39128757 -103142687 + AT_rich Low_complexity Low_complexity 1 45 0 579 168 46 4 chr9 39128891 39129086 -103142358 + AluJ SINE Alu 1 285 -27 657 0 0 0 chr9 39129086 39129159 -103142285 + (TA)n Simple_repeat Simple_repeat 1 73 0 994 201 36 5 chr9 39129968 39130187 -103141257 + L1MB7 LINE L1 4906 5131 -1015 1114 194 123 32 chr9 39130195 39130479 -103140965 + MER2 DNA MER2_type 1 310 -35 1028 188 33 19 chr9 39130627 39130897 -103140547 + L1MB7 LINE L1 5214 5491 -693 1602 166 107 74 chr9 39130915 39131319 -103140125 + L1MB7 LINE L1 5693 6116 -68 2189 108 0 3 chr9 39131319 39131607 -103139837 - AluSx SINE Alu -25 287 1 1602 166 107 74 chr9 39131607 39131678 -103139766 + L1MB7 LINE L1 6116 6183 -1 308 290 0 0 chr9 39131817 39131886 -103139558 + MER3 DNA MER1_type 10 78 -131 21 0 0 0 chr9 39131899 39131920 -103139524 + AT_rich Low_complexity Low_complexity 1 21 0 959 220 0 6 chr9 39132303 39132471 -103138973 - FAM SINE Alu -5 170 4 21 0 0 0 chr9 39132471 39132492 -103138952 + AT_rich Low_complexity Low_complexity 1 21 0 278 232 166 50 chr9 39132503 39132684 -103138760 - L1MC5 LINE L1 -49 7912 7711 921 178 42 21 chr9 39132698 39132889 -103138555 - MER20 DNA MER1_type -24 195 1 447 226 64 25 chr9 39132889 39133093 -103138351 - L1MC5 LINE L1 -243 7718 7507 474 185 56 9 chr9 39133265 39133373 -103138071 - L1MC5 LINE L1 -727 7234 7122 226 132 0 57 chr9 39133451 39133504 -103137940 - L1MC5 LINE L1 -1005 6956 6907 1536 153 87 33 chr9 39133508 39133783 -103137661 - AluSx SINE Alu -22 290 1 4375 141 93 20 chr9 39134250 39134285 -103137159 + Tigger1 DNA MER2_type 567 598 -1820 1205 182 174 45 chr9 39134285 39134549 -103136895 + AluJb SINE Alu 5 302 0 4375 141 93 20 chr9 39134549 39135323 -103136121 + Tigger1 DNA MER2_type 598 1435 -983 2498 163 41 24 chr9 39135323 39135911 -103135533 - L1M2 LINE L1 -745 5401 4917 1752 107 137 0 chr9 39135911 39136173 -103135271 - AluSx SINE Alu -4 298 1 2498 163 41 24 chr9 39136173 39136257 -103135187 - L1M2 LINE L1 -1229 4917 4836 1155 158 96 14 chr9 39136883 39137092 -103134352 - MER30 DNA MER1_type 0 230 5 728 269 65 7 chr9 39137370 39137664 -103133780 + L1M4 LINE L1 4420 4730 -1416 606 309 59 38 chr9 39137746 39137982 -103133462 + MLT1J LTR MaLR 78 318 -193 231 231 0 39 chr9 39138014 39138066 -103133378 + MLT1J LTR MaLR 388 437 -74 1915 128 3 32 chr9 39138074 39138387 -103133057 + AluSx SINE Alu 1 304 -8 328 298 59 29 chr9 39139843 39139996 -103131448 + MIR SINE MIR 12 178 -67 180 0 0 0 chr9 39140029 39140049 -103131395 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 1842 206 73 50 chr9 39140062 39140250 -103131194 - L1MB7 LINE L1 -6 6178 5996 1671 98 4 43 chr9 39140250 39140505 -103130939 - AluY SINE Alu -12 299 55 1842 206 73 50 chr9 39140505 39140839 -103130605 - L1MB7 LINE L1 -188 5996 5644 23 0 0 0 chr9 39141647 39141670 -103129774 + AT_rich Low_complexity Low_complexity 1 23 0 2171 129 0 0 chr9 39141902 39142205 -103129239 - AluSx SINE Alu -9 303 1 856 245 26 114 chr9 39142847 39143121 -103128323 - L2 LINE L2 -1330 1984 1766 2372 101 0 10 chr9 39143121 39143429 -103128015 + AluSx SINE Alu 1 305 -7 856 245 26 114 chr9 39143429 39143619 -103127825 - L2 LINE L2 -1548 1766 1561 2426 46 0 0 chr9 39144298 39144582 -103126862 - AluY SINE Alu -27 284 1 1316 253 75 15 chr9 39144628 39145027 -103126417 - L1M4 LINE L1 -2266 3880 3458 681 224 23 11 chr9 39145055 39145229 -103126215 + LTR41 LTR ERVL 4 179 -594 320 190 12 17 chr9 39145681 39145761 -103125683 + LTR41 LTR ERVL 705 794 -1 426 245 104 104 chr9 39145763 39146012 -103125432 + MLT1F LTR MaLR 25 273 -269 543 206 0 0 chr9 39146146 39146243 -103125201 + FLAM_A SINE Alu 20 116 -26 514 136 10 48 chr9 39146251 39146354 -103125090 - L1MB8 LINE L1 -51 6127 6029 2153 104 0 4 chr9 39146363 39146643 -103124801 + AluSx SINE Alu 9 287 -25 612 120 0 38 chr9 39146675 39146681 -103124763 + (GAAA)n Simple_repeat Simple_repeat 1 6 -122 2407 82 3 0 chr9 39146681 39146987 -103124457 + AluY SINE Alu 1 307 -4 612 120 0 38 chr9 39146987 39147113 -103124331 + (GAAA)n Simple_repeat Simple_repeat 6 128 0 1186 190 12 87 chr9 39147122 39147191 -103124253 + L1MB7 LINE L1 2557 2630 -3516 2101 126 7 7 chr9 39147191 39147501 -103123943 + AluSx SINE Alu 1 310 -2 1186 190 12 87 chr9 39147501 39147763 -103123681 + L1MB7 LINE L1 2630 2863 -3283 257 214 14 0 chr9 39147771 39147841 -103123603 - L1M4 LINE L1 -3600 2546 2476 3942 160 60 78 chr9 39147853 39148053 -103123391 + L1MB7 LINE L1 4960 5162 -1022 2102 110 3 31 chr9 39148053 39148370 -103123074 - AluSx SINE Alu 0 312 5 3942 160 60 78 chr9 39148370 39148566 -103122878 + L1MB7 LINE L1 5162 5360 -824 1953 128 20 10 chr9 39148566 39148864 -103122580 + AluJo SINE Alu 3 303 -9 270 0 0 0 chr9 39148865 39148895 -103122549 + (CA)n Simple_repeat Simple_repeat 2 31 0 3942 160 60 78 chr9 39148895 39148929 -103122515 + L1MB7 LINE L1 5360 5393 -791 2913 3 0 0 chr9 39148929 39149238 -103122206 + AluYb8 SINE Alu 1 309 -9 3942 160 60 78 chr9 39149238 39149554 -103121890 + L1MB7 LINE L1 5393 5713 -471 2059 141 3 0 chr9 39149554 39149858 -103121586 + AluSx SINE Alu 2 306 -6 3942 160 60 78 chr9 39149858 39150349 -103121095 + L1MB7 LINE L1 5713 6184 0 2463 80 0 0 chr9 39150416 39150718 -103120726 - AluY SINE Alu -9 302 1 2112 106 14 0 chr9 39150718 39151011 -103120433 - AluSx SINE Alu -15 297 1 290 115 0 0 chr9 39151011 39151063 -103120381 - AluSq SINE Alu 0 302 251 1454 109 5 15 chr9 39151063 39151265 -103120179 - AluSq SINE Alu -113 200 1 324 0 0 0 chr9 39151278 39151314 -103120130 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 291 298 0 12 chr9 39151682 39151766 -103119678 - MIR SINE MIR -57 151 69 2213 89 7 0 chr9 39152091 39152373 -103119071 - AluSp SINE Alu -29 284 1 2338 99 0 10 chr9 39152376 39152680 -103118764 - AluSg SINE Alu -9 301 1 200 183 50 17 chr9 39152784 39152844 -103118600 - L2 LINE L2 -100 3213 3152 1129 223 0 27 chr9 39152916 39153140 -103118304 + AluJo SINE Alu 1 218 -94 434 128 0 103 chr9 39153140 39153197 -103118247 + AluSq SINE Alu 84 133 -180 2500 70 3 0 chr9 39153197 39153497 -103117947 + AluSg SINE Alu 1 301 -9 434 128 0 103 chr9 39153497 39153517 -103117927 + AluSq SINE Alu 133 153 -160 3311 107 15 2 chr9 39153682 39154142 -103117302 - LTR15 LTR ERV1 -6 487 22 1412 87 0 5 chr9 39154142 39154326 -103117118 - AluSp SINE Alu -11 302 120 266 241 161 69 chr9 39154963 39155137 -103116307 + MIR SINE MIR 52 241 -21 2055 95 11 4 chr9 39156479 39156753 -103114691 + AluSq SINE Alu 1 276 -37 371 132 0 0 chr9 39156821 39156874 -103114570 - Alu SINE Alu -246 53 1 1878 121 19 55 chr9 39157489 39157796 -103113648 - AluSx SINE Alu -16 296 1 1256 167 72 5 chr9 39158156 39158377 -103113067 - MER46A DNA MER2_type 0 236 1 1740 176 0 20 chr9 39158572 39158868 -103112576 - AluJb SINE Alu -22 290 1 1957 72 0 45 chr9 39158949 39159214 -103112230 - AluY SINE Alu -58 253 1 1337 221 165 21 chr9 39159240 39159823 -103111621 - HsTC2 DNA Tc2 -60 1838 7 2283 84 0 3 chr9 39159826 39160110 -103111334 + AluSq SINE Alu 1 283 -30 255 212 0 178 chr9 39160249 39160395 -103111049 - L1ME3A LINE L1 -88 6082 5963 1711 117 64 0 chr9 39160405 39160654 -103110790 - AluSc SINE Alu -15 294 30 205 50 25 25 chr9 39161107 39161147 -103110297 + (CGCGG)n Simple_repeat Simple_repeat 3 42 0 309 301 93 66 chr9 39161724 39161907 -103109537 + MIR3 SINE MIR 6 193 -15 680 132 26 0 chr9 39162752 39162866 -103108578 - AluJo SINE Alu -1 311 195 871 170 7 0 chr9 39162866 39163007 -103108437 - AluJo SINE Alu -170 142 1 570 190 8 33 chr9 39163206 39163327 -103108117 + MER3 DNA MER1_type 10 127 -82 21 0 0 0 chr9 39163518 39163539 -103107905 + AT_rich Low_complexity Low_complexity 1 21 0 361 267 74 30 chr9 39163728 39163863 -103107581 + L2 LINE L2 1560 1700 -1614 534 263 124 57 chr9 39163909 39164896 -103106548 - L1M4 LINE L1 -1043 5103 3879 2019 110 21 14 chr9 39164896 39165187 -103106257 + AluSx SINE Alu 1 293 -19 534 263 124 57 chr9 39165187 39165577 -103105867 - L1M4 LINE L1 -2267 3879 3516 221 277 190 76 chr9 39166374 39166558 -103104886 + L2 LINE L2 3062 3266 -6 1016 113 0 0 chr9 39166787 39166920 -103104524 + AluJb SINE Alu 1 133 -179 529 247 26 47 chr9 39167821 39168011 -103103433 - L1ME3A LINE L1 -2062 5746 5561 1007 155 63 43 chr9 39168020 39168227 -103103217 - AluJb SINE Alu -17 295 85 1991 158 7 0 chr9 39168812 39169115 -103102329 + AluSx SINE Alu 1 305 -7 742 141 14 7 chr9 39169125 39169267 -103102177 + GA-rich Low_complexity Low_complexity 1 143 0 1336 102 0 0 chr9 39170233 39170409 -103101035 - AluSg/x SINE Alu -11 301 126 1169 109 36 41 chr9 39170756 39170976 -103100468 + L1MB3 LINE L1 5963 6181 -2 3044 134 39 26 chr9 39170979 39171474 -103099970 + L1MB3 LINE L1 5204 5796 -387 1825 166 3 27 chr9 39171474 39171775 -103099669 - AluSx SINE Alu -18 294 1 3044 134 39 26 chr9 39171775 39171959 -103099485 + L1MB3 LINE L1 5796 5976 -207 614 295 85 25 chr9 39171959 39172280 -103099164 + L2 LINE L2 2697 3029 -243 607 202 72 63 chr9 39172304 39172362 -103099082 + L1MB7 LINE L1 5808 5864 -320 2151 129 83 44 chr9 39172362 39172564 -103098880 + MSTB LTR MaLR 1 194 -232 2099 106 13 20 chr9 39172564 39172697 -103098747 + AluSx SINE Alu 1 133 -179 2266 106 3 0 chr9 39172697 39172989 -103098455 + AluSp SINE Alu 1 293 -20 2099 106 13 20 chr9 39172989 39173156 -103098288 + AluSx SINE Alu 133 299 -13 2151 129 83 44 chr9 39173156 39173363 -103098081 + MSTB LTR MaLR 194 426 0 607 202 72 63 chr9 39173363 39173499 -103097945 + L1MB7 LINE L1 5864 6009 -175 443 228 31 12 chr9 39173499 39173661 -103097783 - L1 LINE L1 -1626 5236 5072 5333 125 75 28 chr9 39173664 39174321 -103097123 - L1PBa LINE L1 -3508 3354 2730 2325 68 0 7 chr9 39174321 39174613 -103096831 + AluSp SINE Alu 14 303 -10 5333 125 75 28 chr9 39174613 39176649 -103094795 - L1PBa LINE L1 -4132 2730 329 2137 116 3 31 chr9 39176649 39176968 -103094476 - AluSx SINE Alu -2 310 1 5333 125 75 28 chr9 39176968 39177295 -103094149 - L1PBa LINE L1 -6533 329 19 2073 139 3 0 chr9 39177422 39177717 -103093727 - AluSx SINE Alu -16 296 1 1619 157 70 28 chr9 39177955 39178242 -103093202 - AluJb SINE Alu -13 299 1 225 0 0 0 chr9 39178535 39178560 -103092884 + (TCCA)n Simple_repeat Simple_repeat 2 26 0 548 183 183 8 chr9 39178583 39178703 -103092741 - FRAM SINE Alu -29 147 7 674 239 23 11 chr9 39178746 39178922 -103092522 - L1ME LINE L1 -453 5711 5534 1320 115 4 40 chr9 39179064 39179290 -103092154 - MER7A DNA MER2_type -3 333 116 1114 139 184 129 chr9 39179290 39179367 -103092077 + Tigger2a DNA MER2_type 1 72 -2636 1526 124 34 0 chr9 39179367 39179601 -103091843 - AluSq SINE Alu -71 242 1 1114 139 184 129 chr9 39179601 39179919 -103091525 + Tigger2a DNA MER2_type 72 418 -16 553 167 123 0 chr9 39179914 39180028 -103091416 - MER7A DNA MER2_type -218 128 3 * 856 198 13 0 chr9 39180184 39180341 -103091103 - MER5A DNA MER1_type 0 189 31 457 153 270 15 chr9 39180402 39180539 -103090905 - MER58A DNA MER1_type -5 219 48 2007 127 0 20 chr9 39180756 39181055 -103090389 + AluSq SINE Alu 1 293 -20 2419 83 0 3 chr9 39181134 39181436 -103090008 - AluSg SINE Alu -9 301 1 307 227 117 69 chr9 39181490 39181882 -103089562 - L1MC5 LINE L1 -30 7931 7521 331 264 127 31 chr9 39181928 39182220 -103089224 - L1 LINE L1 -1795 4351 4032 258 316 104 19 chr9 39183099 39183311 -103088133 - L1 LINE L1 -2362 3784 3555 2176 104 0 7 chr9 39183328 39183625 -103087819 - AluSx SINE Alu -17 295 1 1661 156 84 7 chr9 39184713 39184988 -103086456 - AluSx SINE Alu -16 296 1 381 176 0 0 chr9 39185656 39185730 -103085714 - MER116 DNA Mariner -5 75 2 21 0 0 0 chr9 39185742 39185763 -103085681 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 39186006 39186038 -103085406 + AT_rich Low_complexity Low_complexity 1 32 0 1994 132 0 10 chr9 39186095 39186390 -103085054 + AluJb SINE Alu 1 292 -20 2234 114 0 23 chr9 39186915 39187223 -103084221 - AluSq SINE Alu -12 301 1 392 258 132 19 chr9 39187225 39187384 -103084060 - L1MEd LINE L1 -4936 1183 1007 2385 88 0 0 chr9 39187395 39187700 -103083744 - AluSg SINE Alu -5 305 1 390 262 112 57 chr9 39188278 39188395 -103083049 + L1MB8 LINE L1 5609 5718 -460 2254 105 0 3 chr9 39188395 39188689 -103082755 + AluSq SINE Alu 1 293 -20 390 262 112 57 chr9 39188689 39188851 -103082593 + L1MB8 LINE L1 5718 5905 -273 829 154 8 117 chr9 39189061 39189308 -103082136 - AluJo SINE Alu -8 304 85 1180 76 7 0 chr9 39189317 39189462 -103081982 - AluSq/x SINE Alu -166 146 1 1020 235 28 84 chr9 39189754 39189960 -103081484 - MLT1A2 LTR MaLR -4 370 195 1847 83 38 56 chr9 39189960 39190248 -103081196 - AluSc SINE Alu -25 284 2 1020 235 28 84 chr9 39190248 39190433 -103081011 - MLT1A2 LTR MaLR -179 195 1 1588 179 21 24 chr9 39190661 39190952 -103080492 - AluJo SINE Alu -11 301 12 2362 92 0 3 chr9 39192115 39192419 -103079025 + AluSx SINE Alu 1 303 -9 24 53 0 0 chr9 39192983 39193021 -103078423 + AT_rich Low_complexity Low_complexity 1 38 0 1094 179 88 39 chr9 39193095 39193403 -103078041 + MER2 DNA MER2_type 1 323 -22 2145 128 0 0 chr9 39193641 39193947 -103077497 - AluY SINE Alu -5 306 1 2340 98 3 0 chr9 39194364 39194671 -103076773 - AluSp SINE Alu -5 308 1 298 280 100 38 chr9 39194781 39195020 -103076424 + HAL1 LINE L1 1407 1660 -847 237 211 23 98 chr9 39195634 39195672 -103075772 + L1MEd LINE L1 55 94 -6025 2320 77 7 3 chr9 39195672 39195971 -103075473 - AluSp SINE Alu -13 300 1 1597 167 34 34 chr9 39195973 39196266 -103075178 - AluJb SINE Alu -19 293 1 237 211 23 98 chr9 39196266 39196357 -103075087 + L1MEd LINE L1 95 177 -5942 266 317 56 52 chr9 39196404 39196653 -103074791 + L1MEd LINE L1 315 564 -5555 1480 163 24 27 chr9 39196737 39197032 -103074412 + MER49 LTR ERV1 1 294 -629 1262 196 61 28 chr9 39197076 39197402 -103074042 + MER4D LTR ERV1 567 903 0 346 231 179 15 chr9 39197409 39197543 -103073901 - MER5A DNA MER1_type 0 189 34 1988 121 35 0 chr9 39198679 39198961 -103072483 - AluSc SINE Alu -17 292 1 203 305 115 46 chr9 39199810 39199984 -103071460 - L2 LINE L2 -1038 2276 2091 8800 101 14 18 chr9 39200063 39200852 -103070592 + HSMAR1 DNA Mariner 1 785 -502 2390 84 7 0 chr9 39200852 39201150 -103070294 - AluSq SINE Alu -13 300 1 8800 101 14 18 chr9 39201150 39201652 -103069792 + HSMAR1 DNA Mariner 785 1287 0 338 272 83 50 chr9 39201773 39201953 -103069491 - L1 LINE L1 -1488 4658 4473 3167 99 77 41 chr9 39201973 39202280 -103069164 + MER41A LTR ERV1 1 337 -217 2205 108 0 0 chr9 39202280 39202567 -103068877 - AluSx SINE Alu -18 294 8 3167 99 77 41 chr9 39202567 39202794 -103068650 + MER41A LTR ERV1 337 554 0 458 221 123 0 chr9 39202980 39203134 -103068310 + L1ME1 LINE L1 5993 6165 -1 259 282 169 16 chr9 39203280 39203342 -103068102 + L1ME3A LINE L1 5666 5717 -453 190 0 32 32 chr9 39203342 39203373 -103068071 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 259 282 169 16 chr9 39203373 39203558 -103067886 + L1ME3A LINE L1 5717 5951 -219 24 32 0 0 chr9 39204620 39204651 -103066793 + AT_rich Low_complexity Low_complexity 1 31 0 339 238 212 42 chr9 39204886 39205075 -103066369 + MIR SINE MIR 10 230 -32 27 0 0 0 chr9 39205460 39205487 -103065957 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr9 39206211 39206232 -103065212 + AT_rich Low_complexity Low_complexity 1 21 0 354 109 18 0 chr9 39206705 39206760 -103064684 + AluJ/FLAM SINE Alu 9 64 -238 2410 53 7 3 chr9 39207084 39207384 -103064060 - AluY SINE Alu -10 301 1 1321 198 0 89 chr9 39207926 39208240 -103063204 + AluJo SINE Alu 1 286 -26 414 0 0 0 chr9 39208949 39208995 -103062449 + (TG)n Simple_repeat Simple_repeat 1 46 0 1057 207 161 102 chr9 39209021 39209466 -103061978 + MLT1E1 LTR MaLR 28 516 -138 2451 73 7 0 chr9 39209466 39209767 -103061677 + AluSc SINE Alu 1 303 -6 1057 207 161 102 chr9 39209767 39209892 -103061552 + MLT1E1 LTR MaLR 516 632 -22 227 368 21 21 chr9 39210116 39210211 -103061233 - MIR SINE MIR -152 110 16 240 204 99 84 chr9 39211202 39211344 -103060100 + L1P4 LINE L1 5677 5820 -343 354 256 37 0 chr9 39211563 39211645 -103059799 + L2 LINE L2 3186 3270 -2 304 286 48 0 chr9 39212482 39212566 -103058878 - L1MC4 LINE L1 -1339 6703 6616 1964 117 7 50 chr9 39212567 39212867 -103058577 - AluSq SINE Alu -14 299 13 23 0 0 0 chr9 39212867 39212890 -103058554 + AT_rich Low_complexity Low_complexity 1 23 0 224 280 170 10 chr9 39213554 39213654 -103057790 - L2 LINE L2 -14 3258 3143 538 224 8 30 chr9 39213755 39213889 -103057555 + FLAM_A SINE Alu 3 133 0 301 167 44 67 chr9 39214701 39214791 -103056653 - MIR3 SINE MIR -6 202 115 256 89 76 25 chr9 39214934 39215013 -103056431 + (TA)n Simple_repeat Simple_repeat 2 84 0 312 152 0 0 chr9 39216344 39216410 -103055034 + (CCCCG)n Simple_repeat Simple_repeat 5 70 0 378 227 23 8 chr9 39216671 39216803 -103054641 + T-rich Low_complexity Low_complexity 5 138 0 1382 120 8 51 chr9 39217236 39217282 -103054162 + AluSg/x SINE Alu 88 134 -178 2264 98 0 0 chr9 39217282 39217588 -103053856 + AluSx SINE Alu 1 306 0 1382 120 8 51 chr9 39217588 39217774 -103053670 + AluSg/x SINE Alu 134 311 -1 1151 156 47 5 chr9 39217831 39218042 -103053402 + MER46A DNA MER2_type 17 236 0 796 179 6 13 chr9 39218462 39218618 -103052826 + AluSg/x SINE Alu 144 298 -12 521 190 127 0 chr9 39218862 39219004 -103052440 + MIR SINE MIR 21 180 -82 2474 71 0 0 chr9 39219029 39219326 -103052118 + AluY SINE Alu 1 297 -14 465 282 89 28 chr9 39219330 39219543 -103051901 + L2 LINE L2 3074 3299 -14 2421 93 3 0 chr9 39220160 39220472 -103050972 + AluSp SINE Alu 1 313 0 1883 156 3 20 chr9 39220728 39221053 -103050391 + AluSx SINE Alu 1 312 0 1038 125 42 36 chr9 39221053 39221221 -103050223 + AluSg/x SINE Alu 134 302 -10 2909 13 0 0 chr9 39222446 39222757 -103048687 + AluY SINE Alu 1 311 0 227 259 92 54 chr9 39223530 39223724 -103047720 - MIR SINE MIR -50 212 16 1988 129 16 19 chr9 39224190 39224500 -103046944 + AluSx SINE Alu 1 309 -3 1409 96 6 0 chr9 39224595 39224773 -103046671 - AluSg SINE Alu -131 179 1 186 43 0 0 chr9 39224932 39224955 -103046489 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2134 183 176 13 chr9 39224965 39225516 -103045928 - L1MB7 LINE L1 -23 6161 5521 440 225 96 78 chr9 39225538 39225756 -103045688 + MIR SINE MIR 29 250 -12 202 225 0 100 chr9 39225987 39226067 -103045377 + A-rich Low_complexity Low_complexity 2 73 0 1787 160 20 57 chr9 39226192 39226436 -103045008 + MLT1A1 LTR MaLR 29 281 -84 507 33 0 0 chr9 39226436 39226497 -103044947 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 2099 122 7 0 chr9 39226500 39226786 -103044658 - AluSp SINE Alu -23 290 3 1787 160 20 57 chr9 39226786 39226887 -103044557 + MLT1A1 LTR MaLR 283 365 0 2175 111 10 0 chr9 39226913 39227211 -103044233 + AluY SINE Alu 1 301 -10 204 125 0 0 chr9 39227230 39227262 -103044182 + (TA)n Simple_repeat Simple_repeat 1 32 0 255 284 108 39 chr9 39227578 39227680 -103043764 - L2 LINE L2 -19 3294 3186 334 307 44 9 chr9 39227748 39227862 -103043582 - L2 LINE L2 -1 3312 3195 384 276 89 44 chr9 39227935 39228096 -103043348 - HAL1 LINE L1 -4 2503 2328 1235 206 47 38 chr9 39228096 39228282 -103043162 + MER2 DNA MER2_type 1 193 -151 2064 112 0 50 chr9 39228282 39228585 -103042859 + AluSg SINE Alu 6 293 -17 1235 206 47 38 chr9 39228585 39228738 -103042706 + MER2 DNA MER2_type 193 343 -1 384 276 89 44 chr9 39228738 39228801 -103042643 - HAL1 LINE L1 -179 2328 2269 28 0 0 26 chr9 39228977 39228998 -103042446 + AT_rich Low_complexity Low_complexity 1 22 -16 2177 91 11 3 chr9 39228998 39229283 -103042161 - AluSp SINE Alu -26 287 1 28 0 0 26 chr9 39229283 39229300 -103042144 + AT_rich Low_complexity Low_complexity 22 38 0 963 242 71 30 chr9 39229661 39229958 -103041486 - MER21B LTR ERV1 -54 809 501 1685 170 84 9 chr9 39229963 39230286 -103041158 - MER7A DNA MER2_type -1 345 1 1574 212 72 40 chr9 39230286 39230684 -103040760 - MER21B LTR ERV1 -366 497 87 505 185 0 22 chr9 39230729 39230821 -103040623 - MER21B LTR ERV1 -773 90 1 2133 130 0 3 chr9 39230912 39231212 -103040232 - AluSg SINE Alu -11 299 1 2033 77 67 27 chr9 39231287 39231584 -103039860 + AluSc SINE Alu 1 309 0 2031 78 53 47 chr9 39231849 39232208 -103039236 + L1MA3 LINE L1 5944 6304 -1 1044 163 4 2 chr9 39232238 39232491 -103038953 + AluSx SINE Alu 2 306 -4 447 261 96 25 chr9 39232502 39232701 -103038743 + L1MC/D LINE L1 5372 5584 -2224 2103 117 3 0 chr9 39232735 39233018 -103038426 + AluSc SINE Alu 1 284 -25 203 138 0 0 chr9 39233018 39233047 -103038397 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 469 243 45 69 chr9 39233629 39233876 -103037568 - L1MEd LINE L1 -4868 1251 1011 394 191 45 18 chr9 39233872 39233982 -103037462 - L1MCa LINE L1 -4898 1528 1416 * 1688 167 11 4 chr9 39234014 39234330 -103037114 - AluJo SINE Alu 0 318 1 2159 108 0 7 chr9 39234357 39234679 -103036765 - AluSp SINE Alu 0 320 1 1444 211 0 30 chr9 39234814 39235113 -103036331 + AluJo SINE Alu 1 290 -22 3335 149 49 35 chr9 39235114 39235414 -103036030 - L1MB7 LINE L1 -55 6129 5834 2182 128 3 0 chr9 39235414 39235712 -103035732 - AluSx SINE Alu -13 299 1 3335 149 49 35 chr9 39235712 39236087 -103035357 - L1MB7 LINE L1 -350 5834 5445 1344 185 27 64 chr9 39236107 39236261 -103035183 - AluJo SINE Alu -16 286 147 2341 97 3 3 chr9 39236261 39236559 -103034885 - AluSx SINE Alu -11 301 4 1344 185 27 64 chr9 39236559 39236701 -103034743 - AluJo SINE Alu -155 147 1 610 187 110 70 chr9 39236701 39236968 -103034476 + L1MC5 LINE L1 7647 7924 -37 2176 110 0 17 chr9 39237008 39237308 -103034136 - AluSx SINE Alu -17 295 1 2243 116 0 3 chr9 39237460 39237763 -103033681 - AluSx SINE Alu -10 302 1 1904 154 0 7 chr9 39237943 39238241 -103033203 - AluSx SINE Alu -16 296 1 243 91 23 0 chr9 39238433 39238477 -103032967 + Alu SINE Alu 119 163 -3 1882 108 48 0 chr9 39238627 39238895 -103032549 - AluSx SINE Alu -20 292 12 308 279 47 0 chr9 39239437 39239523 -103031921 - MIR3 SINE MIR -52 156 67 1188 137 0 0 chr9 39240175 39240336 -103031108 + AluSq SINE Alu 1 161 -152 526 86 0 0 chr9 39240336 39240406 -103031038 + Alu SINE Alu 225 294 -16 5028 67 63 0 chr9 39240692 39241339 -103030105 + LTR12 LTR ERV1 1 688 0 2361 96 7 0 chr9 39241479 39241781 -103029663 + AluSc SINE Alu 1 304 -5 2351 94 10 0 chr9 39243155 39243464 -103027980 + AluSp SINE Alu 1 312 -1 1999 124 0 24 chr9 39243480 39243794 -103027650 + AluSq SINE Alu 1 307 0 244 301 169 7 chr9 39243896 39244032 -103027412 - L2 LINE L2 -199 3073 2916 639 302 261 13 chr9 39244043 39244797 -103026647 - L2 LINE L2 -550 2764 1824 626 209 91 48 chr9 39244832 39245042 -103026402 + L2 LINE L2 2562 2780 -534 286 282 314 0 chr9 39245094 39245218 -103026226 + L2 LINE L2 2895 3057 -256 2107 122 10 0 chr9 39245227 39245521 -103025923 - AluSx SINE Alu -15 297 1 464 76 15 0 chr9 39245543 39245609 -103025835 - MER41B LTR ERV1 -88 547 481 515 260 114 18 chr9 39245623 39245842 -103025602 + L2 LINE L2 3067 3306 -7 2350 60 11 0 chr9 39246435 39246751 -103024693 + AluY SINE Alu 1 319 0 2442 77 0 13 chr9 39246836 39247135 -103024309 + AluSg SINE Alu 1 295 -15 3881 156 26 65 chr9 39247532 39247889 -103023555 + L1MB7 LINE L1 5368 5737 -447 2269 115 7 0 chr9 39247889 39248194 -103023250 - AluSp SINE Alu -6 307 1 3881 156 26 65 chr9 39248194 39248318 -103023126 + L1MB7 LINE L1 5737 5864 -320 2457 63 0 7 chr9 39248318 39248619 -103022825 + AluY SINE Alu 1 299 -12 3881 156 26 65 chr9 39248619 39248977 -103022467 + L1MB7 LINE L1 5864 6175 -9 405 296 0 15 chr9 39249022 39249154 -103022290 + L1ME3A LINE L1 6041 6170 0 250 250 10 50 chr9 39249156 39249256 -103022188 + L1MC4a LINE L1 5827 5922 -1886 2292 95 0 3 chr9 39249445 39249739 -103021705 + AluSx SINE Alu 1 293 -19 302 182 15 0 chr9 39249764 39249830 -103021614 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 255 137 95 63 chr9 39249846 39249941 -103021503 + Charlie2 DNA MER1_type 2728 2825 -37 182 157 98 20 chr9 39250042 39250093 -103021351 + MIR3 SINE MIR 109 163 -45 1648 197 10 10 chr9 39250509 39250808 -103020636 + AluJo SINE Alu 1 299 -13 358 211 0 0 chr9 39250973 39251044 -103020400 - LTR33 LTR ERVL -450 71 1 2415 94 0 0 chr9 39251079 39251378 -103020066 + AluSq SINE Alu 1 299 -14 2194 123 0 0 chr9 39251381 39251673 -103019771 + AluSg SINE Alu 1 292 -18 2441 83 0 3 chr9 39251927 39252227 -103019217 + AluSp SINE Alu 1 299 -14 2031 132 0 10 chr9 39252243 39252553 -103018891 + AluJb SINE Alu 1 307 -5 322 258 57 32 chr9 39252618 39252742 -103018702 + MER5A DNA MER1_type 1 127 -62 496 175 78 0 chr9 39254096 39254199 -103017245 + FLAM_A SINE Alu 24 134 -8 715 186 16 0 chr9 39254314 39254438 -103017006 - FLAM_A SINE Alu -4 129 4 24 53 0 0 chr9 39254558 39254596 -103016848 + AT_rich Low_complexity Low_complexity 1 38 0 507 105 56 5 chr9 39254939 39255062 -103016382 - MER30 DNA MER1_type -37 193 1 1919 121 0 83 chr9 39255373 39255718 -103015726 + AluSq SINE Alu 1 319 0 797 168 0 0 chr9 39255729 39255854 -103015590 + FLAM_A SINE Alu 1 125 -8 2220 107 3 3 chr9 39255855 39256144 -103015300 + AluSq SINE Alu 1 289 -24 23 0 0 0 chr9 39256145 39256168 -103015276 + AT_rich Low_complexity Low_complexity 1 23 0 2353 90 0 7 chr9 39256256 39256555 -103014889 + AluSg1 SINE Alu 3 299 -10 2554 48 0 0 chr9 39256581 39256874 -103014570 + AluY SINE Alu 1 293 -18 825 273 52 8 chr9 39257053 39257302 -103014142 + MIR SINE MIR 2 261 -1 2205 112 0 13 chr9 39257409 39257714 -103013730 + AluSx SINE Alu 1 301 -11 206 173 0 96 chr9 39257833 39257885 -103013559 + MIR SINE MIR 216 262 0 2082 103 7 3 chr9 39257925 39258207 -103013237 - AluSx SINE Alu -29 283 1 189 0 0 0 chr9 39258326 39258347 -103013097 + (A)n Simple_repeat Simple_repeat 1 21 0 2267 100 0 7 chr9 39258356 39258657 -103012787 - AluSq SINE Alu -14 299 1 436 251 49 58 chr9 39258667 39258890 -103012554 - L1MC5 LINE L1 -491 7470 7250 2012 98 4 0 chr9 39258951 39259206 -103012238 - AluSx SINE Alu -56 256 1 22 0 0 0 chr9 39259553 39259575 -103011869 + AT_rich Low_complexity Low_complexity 1 22 0 766 130 42 99 chr9 39259585 39259777 -103011667 + L1MB4 LINE L1 6000 6180 0 2320 86 0 0 chr9 39260104 39260394 -103011050 + AluY SINE Alu 1 290 -21 1249 210 9 0 chr9 39260495 39260724 -103010720 - AluJo SINE Alu -44 268 38 213 39 0 0 chr9 39260883 39260909 -103010535 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2123 79 47 7 chr9 39260911 39261189 -103010255 - AluSx SINE Alu -23 289 1 442 241 53 30 chr9 39261267 39261400 -103010044 - MIR3 SINE MIR -16 192 57 205 288 162 9 chr9 39261780 39261891 -103009553 + MIR3 SINE MIR 59 186 -22 182 237 0 0 chr9 39262514 39262552 -103008892 - L2 LINE L2 -22 3291 3254 2075 118 13 26 chr9 39262769 39263073 -103008371 - AluSx SINE Alu -12 300 1 2372 97 0 3 chr9 39263074 39263385 -103008059 - AluSx SINE Alu 0 312 3 1931 161 0 7 chr9 39265103 39265394 -103006050 - AluSx SINE Alu -23 289 1 1166 102 28 11 chr9 39265436 39265612 -103005832 - L1PA11 LINE L1 -4 6170 5992 340 264 139 71 chr9 39265774 39266054 -103005390 + MER102a DNA MER1_type 31 329 -1 2246 95 3 0 chr9 39267127 39267411 -103004033 - AluSc SINE Alu -23 286 2 21 36 0 0 chr9 39267418 39267446 -103003998 + AT_rich Low_complexity Low_complexity 1 28 0 2200 89 17 0 chr9 39268290 39268581 -103002863 + AluSg SINE Alu 1 296 -14 306 125 0 21 chr9 39269012 39269060 -103002384 - AluS SINE Alu -228 72 26 254 191 0 63 chr9 39269280 39269343 -103002101 - L1MC/D LINE L1 -1911 5897 5839 1966 100 63 23 chr9 39269352 39269651 -103001793 - AluSq SINE Alu -2 311 1 2150 136 0 0 chr9 39269653 39269948 -103001496 - AluSx SINE Alu -17 295 1 1949 142 48 0 chr9 39270100 39270389 -103001055 - AluSx SINE Alu -9 303 1 278 301 148 43 chr9 39270407 39270616 -103000828 - MIR SINE MIR -3 259 29 1729 67 31 5 chr9 39271380 39271603 -102999841 + MER30 DNA MER1_type 1 229 -1 1704 149 32 7 chr9 39271674 39271955 -102999489 + AluJb SINE Alu 1 288 -24 193 297 59 40 chr9 39272215 39272316 -102999128 + L2 LINE L2 3179 3281 -32 2392 70 13 0 chr9 39273069 39273371 -102998073 - AluY SINE Alu -5 306 1 2417 50 0 30 chr9 39273986 39274289 -102997155 + AluY SINE Alu 3 296 -15 262 269 43 11 chr9 39274639 39274732 -102996712 - L1MC4a LINE L1 -1639 6169 6074 296 286 32 65 chr9 39274801 39274955 -102996489 - L1MC4a LINE L1 -1871 5937 5789 390 219 73 51 chr9 39274990 39275127 -102996317 - L2 LINE L2 0 3313 3174 2335 93 3 16 chr9 39275224 39275535 -102995909 + AluSp SINE Alu 1 307 -6 347 220 47 87 chr9 39275541 39275691 -102995753 - MER65-int LTR ERV1 -3070 1801 1658 342 268 62 0 chr9 39275677 39275774 -102995670 - MER65-int LTR ERV1 -3943 993 891 * 4132 212 79 23 chr9 39275785 39276528 -102994916 + L1MD2 LINE L1 5077 5915 -444 2161 112 3 7 chr9 39276528 39276837 -102994607 + AluSq SINE Alu 1 308 0 4132 212 79 23 chr9 39276837 39277287 -102994157 + L1MD2 LINE L1 5915 6338 -21 279 0 0 0 chr9 39277549 39277580 -102993864 + (TG)n Simple_repeat Simple_repeat 2 32 0 211 111 22 22 chr9 39277584 39277629 -102993815 + (TA)n Simple_repeat Simple_repeat 2 46 0 294 185 15 15 chr9 39278024 39278089 -102993355 + THE1B-int LTR MaLR 592 656 -924 6281 76 2 24 chr9 39278089 39278914 -102992530 + THE1B-int LTR MaLR 774 1580 0 708 109 146 0 chr9 39278914 39279024 -102992420 + THE1B LTR MaLR 1 126 -238 2228 105 3 7 chr9 39279025 39279321 -102992123 - AluSx SINE Alu -7 305 11 2238 119 13 0 chr9 39279355 39279657 -102991787 - AluSx SINE Alu -6 306 1 3305 158 27 77 chr9 39279664 39279894 -102991550 - MER6 DNA MER2_type -168 697 457 2071 111 27 3 chr9 39279894 39280191 -102991253 - AluSg SINE Alu -6 304 1 3305 158 27 77 chr9 39280191 39280295 -102991149 - MER6 DNA MER2_type -408 457 349 2324 75 41 0 chr9 39280295 39280590 -102990854 - AluY SINE Alu -4 307 1 3305 158 27 77 chr9 39280590 39280947 -102990497 - MER6 DNA MER2_type -516 349 52 2010 137 0 10 chr9 39280947 39281246 -102990198 + AluJo SINE Alu 1 296 -16 3305 158 27 77 chr9 39281246 39281293 -102990151 - MER6 DNA MER2_type -813 52 4 2316 73 3 16 chr9 39281336 39281639 -102989805 - AluSx SINE Alu -13 299 1 257 154 46 0 chr9 39281642 39281714 -102989730 - L1M LINE L1 -799 5367 5306 549 219 179 7 chr9 39281962 39282113 -102989331 - MER5B DNA MER1_type -1 177 1 2326 90 3 7 chr9 39282284 39282585 -102988859 + AluSg SINE Alu 1 300 -10 2618 47 0 3 chr9 39282739 39283038 -102988406 + AluSg SINE Alu 1 298 -12 681 141 120 89 chr9 39283051 39283123 -102988321 + L1M3c LINE L1 1054 1122 -5019 1407 171 15 90 chr9 39283123 39283456 -102987988 + AluJb SINE Alu 3 310 -2 681 141 120 89 chr9 39283456 39283574 -102987870 + L1M3c LINE L1 1122 1250 -4891 312 49 0 0 chr9 39283675 39283716 -102987728 - MLT2B2 LTR ERVL -474 41 1 396 256 26 8 chr9 39283774 39283891 -102987553 + LTR16C LTR ERVL 366 484 -7 233 275 14 0 chr9 39283897 39283966 -102987478 - L1 LINE L1 -1311 4835 4766 3477 176 28 32 chr9 39283967 39284684 -102986760 - L1MD1 LINE L1 -2 6240 5527 308 284 96 23 chr9 39284685 39284966 -102986478 + LTR38B LTR ERV1 267 555 -1 21 0 0 0 chr9 39285585 39285606 -102985838 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr9 39285903 39285926 -102985518 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 436 323 36 5 chr9 39285949 39286144 -102985300 - L2 LINE L2 -1326 1988 1788 1539 170 50 4 chr9 39286452 39286711 -102984733 + AluJo SINE Alu 25 295 -17 2321 98 3 0 chr9 39286712 39287009 -102984435 + AluSq SINE Alu 1 298 -15 415 143 14 0 chr9 39287012 39287097 -102984347 + L1M3de LINE L1 1950 2045 -4982 924 127 0 132 chr9 39287098 39287287 -102984157 + AluJo SINE Alu 3 166 -146 1483 201 112 85 chr9 39287395 39287766 -102983678 + HAL1 LINE L1 937 1297 -1210 2365 78 0 3 chr9 39287766 39288060 -102983384 + AluY SINE Alu 1 293 -18 1483 201 112 85 chr9 39288060 39288449 -102982995 + HAL1 LINE L1 1297 1717 -790 714 194 21 21 chr9 39288467 39288611 -102982833 + L1MC3 LINE L1 6718 6861 -924 732 282 28 97 chr9 39288618 39288660 -102982784 + L1M3d LINE L1 241 284 -5847 2376 95 3 0 chr9 39288660 39288956 -102982488 + AluSg SINE Alu 2 298 -12 732 282 28 97 chr9 39288956 39289345 -102982099 + L1M3d LINE L1 284 642 -5489 463 299 0 2 chr9 39289478 39289601 -102981843 + L1M3d LINE L1 899 1014 -5117 2130 161 60 23 chr9 39289702 39290099 -102981345 + MSTB LTR MaLR 15 426 0 529 216 44 33 chr9 39290099 39290280 -102981164 - L1MDa LINE L1 -4104 2436 2254 465 194 212 35 chr9 39290308 39290483 -102980961 - MER6 DNA MER2_type 0 865 -65 2047 202 87 6 chr9 39290494 39290998 -102980446 - L1MDa LINE L1 -4358 2182 1638 3029 194 47 11 chr9 39291067 39291679 -102979765 - L1MDa LINE L1 -5889 651 18 2413 103 0 0 chr9 39294322 39294633 -102976811 - AluSx SINE Alu -1 311 1 2408 81 3 13 chr9 39294713 39295020 -102976424 - AluSx SINE Alu -8 304 1 1503 222 16 63 chr9 39295020 39295529 -102975915 - L1M2c LINE L1 -4918 2250 1766 292 348 208 0 chr9 39295869 39296047 -102975397 - L1M2c LINE L1 -6592 576 362 922 102 0 0 chr9 39296049 39296167 -102975277 - AluSq/x SINE Alu -194 118 1 1577 127 30 45 chr9 39296250 39296517 -102974927 - Tigger3(Golem) DNA MER2_type -1 3028 2766 442 186 0 0 chr9 39296519 39296589 -102974855 + AluJ/FLAM SINE Alu 2 71 -241 309 257 58 43 chr9 39296718 39296932 -102974512 + L1MDa LINE L1 1533 1754 -4786 2013 136 0 10 chr9 39297404 39297705 -102973739 + AluSx SINE Alu 5 302 -10 368 247 172 11 chr9 39297967 39298141 -102973303 + MLT1J LTR MaLR 304 505 -6 575 279 176 66 chr9 39298794 39299520 -102971924 + L1MDa LINE L1 2528 3351 -3189 2052 102 3 32 chr9 39299520 39299805 -102971639 + AluSc SINE Alu 1 277 -32 575 279 176 66 chr9 39299805 39299877 -102971567 + L1MDa LINE L1 3351 3414 -3126 274 274 64 34 chr9 39299911 39300132 -102971312 + MER46C DNA MER2_type 68 331 -7 530 263 110 54 chr9 39300255 39300681 -102970763 + L1MDa LINE L1 4261 4710 -1830 240 275 17 25 chr9 39300698 39300818 -102970626 + L1MDa LINE L1 4884 5002 -1538 23432 49 2 3 chr9 39301363 39304211 -102967233 + L1P LINE L1 56 2900 -3246 822 190 35 0 chr9 39304311 39304485 -102966959 + L1MD1 LINE L1 6063 6242 0 21 36 0 0 chr9 39305064 39305092 -102966352 + AT_rich Low_complexity Low_complexity 1 28 0 193 348 11 11 chr9 39305353 39305445 -102965999 - L2 LINE L2 0 3313 3222 323 348 139 4 chr9 39305672 39306032 -102965412 - L2 LINE L2 -191 3081 2671 1721 125 4 29 chr9 39306040 39306319 -102965125 + AluSq SINE Alu 42 313 0 2355 102 0 3 chr9 39306322 39306625 -102964819 + AluSx SINE Alu 1 302 -10 396 270 212 17 chr9 39308915 39309208 -102962236 - L1MC4 LINE L1 -1003 7039 6690 774 247 199 11 chr9 39309391 39309662 -102961782 - MER77 LTR ERV1 -7 598 277 228 200 125 25 chr9 39309807 39309887 -102961557 - MER77 LTR ERV1 -465 140 53 790 224 51 23 chr9 39310679 39310893 -102960551 - LTR16B LTR ERVL -1 463 244 441 226 36 0 chr9 39311013 39311197 -102960247 - L1ME3A LINE L1 0 6170 5950 555 286 141 18 chr9 39311336 39311619 -102959825 - L1ME3A LINE L1 -406 5764 5447 265 219 109 47 chr9 39311633 39311761 -102959683 - L1ME3A LINE L1 -773 5389 5254 271 263 161 0 chr9 39311813 39311931 -102959513 - MIR3 SINE MIR -65 143 7 1303 227 56 43 chr9 39312166 39312562 -102958882 + MLT1C LTR MaLR 59 459 -8 213 280 90 20 chr9 39313252 39313352 -102958092 + MIR3 SINE MIR 4 110 -98 * 249 277 232 0 chr9 39313337 39313449 -102957995 + MIR SINE MIR 119 256 -6 6189 241 20 20 chr9 39313687 39316019 -102955425 + HERVH LTR ERV1 1918 4857 -2899 407 322 8 0 chr9 39318230 39318351 -102953093 + MIR SINE MIR 117 238 -24 2080 110 23 0 chr9 39318550 39318849 -102952595 + AluSg SINE Alu 1 306 -4 1735 126 46 0 chr9 39318941 39319226 -102952218 - AluSx SINE Alu -14 298 1 2097 87 0 14 chr9 39319334 39319620 -102951824 - AluSq SINE Alu -9 304 23 2150 91 3 7 chr9 39319856 39320152 -102951292 + AluSg1 SINE Alu 1 295 -14 1503 161 9 52 chr9 39320208 39320354 -102951090 + AluJb SINE Alu 1 152 -160 2273 71 3 7 chr9 39320354 39320662 -102950782 + AluY SINE Alu 1 307 -4 1503 161 9 52 chr9 39320662 39320839 -102950605 + AluJb SINE Alu 152 310 -2 1850 78 112 4 chr9 39320969 39321238 -102950206 + AluYa8 SINE Alu 3 300 -10 22 0 0 0 chr9 39321324 39321346 -102950098 + AT_rich Low_complexity Low_complexity 1 22 0 2263 86 3 0 chr9 39321350 39321652 -102949792 + AluSp SINE Alu 1 303 -10 740 158 0 25 chr9 39322629 39322749 -102948695 + FLAM_C SINE Alu 1 117 -26 2098 129 0 0 chr9 39322790 39323093 -102948351 - AluSx SINE Alu -9 303 1 2115 123 7 0 chr9 39323354 39323664 -102947780 - AluSx SINE Alu 0 312 1 2333 98 0 0 chr9 39323817 39324124 -102947320 - AluSx SINE Alu 0 312 6 21 0 0 0 chr9 39324453 39324474 -102946970 + AT_rich Low_complexity Low_complexity 1 21 0 2270 85 3 0 chr9 39324872 39325165 -102946279 - AluSp SINE Alu -17 296 3 2406 70 0 0 chr9 39325168 39325467 -102945977 - AluSx SINE Alu -13 299 1 635 346 21 0 chr9 39325713 39325901 -102945543 - MER91A DNA MER1_type 0 196 5 2244 84 3 0 chr9 39325919 39326215 -102945229 + AluSq SINE Alu 1 297 -16 317 231 124 25 chr9 39326906 39327027 -102944417 - MER5A DNA MER1_type -1 188 56 579 293 61 56 chr9 39327523 39327699 -102943745 - L1ME3A LINE L1 -218 5952 5778 2336 52 7 10 chr9 39327699 39328005 -102943439 + AluY SINE Alu 1 305 -6 579 293 61 56 chr9 39328005 39328368 -102943076 - L1ME3A LINE L1 -392 5778 5410 382 200 23 2 chr9 39329770 39329867 -102941577 + MIR SINE MIR 39 136 -72 43 35 0 0 chr9 39330207 39330264 -102941180 + GC_rich Low_complexity Low_complexity 1 57 0 252 137 0 0 chr9 39330313 39330364 -102941080 + (CGG)n Simple_repeat Simple_repeat 3 53 0 351 232 23 28 chr9 39330388 39330565 -102940879 + (CGG)n Simple_repeat Simple_repeat 3 178 0 283 267 53 13 chr9 39331654 39331729 -102939715 - L2 LINE L2 -52 3220 3143 440 331 159 33 chr9 39332357 39332576 -102938868 - L2 LINE L2 -438 2876 2686 2064 148 79 57 chr9 39332576 39332631 -102938813 + MSTC LTR MaLR 1 53 -375 2215 78 0 0 chr9 39332631 39332945 -102938499 + AluSx SINE Alu 1 314 0 2064 148 79 57 chr9 39332945 39333307 -102938137 + MSTC LTR MaLR 53 428 0 440 331 159 33 chr9 39333307 39333507 -102937937 - L2 LINE L2 -628 2686 2404 2221 67 3 3 chr9 39333734 39334049 -102937395 + AluSp SINE Alu 1 315 0 375 110 22 88 chr9 39334049 39334140 -102937304 - L1MB4 LINE L1 -8 6172 6088 1085 117 0 53 chr9 39334140 39334328 -102937116 + AluSg/x SINE Alu 130 307 -2 1549 139 43 25 chr9 39334337 39334617 -102936827 - L1MB4 LINE L1 -83 6097 5813 1881 144 0 22 chr9 39334633 39334953 -102936491 - AluSp SINE Alu 0 313 1 1419 139 19 56 chr9 39334956 39335223 -102936221 - L1MB4 LINE L1 -512 5668 5412 2264 42 0 14 chr9 39335352 39335661 -102935783 + AluY SINE Alu 2 306 0 257 182 0 0 chr9 39336068 39336112 -102935332 - L1ME LINE L1 -460 5661 5618 25 51 0 0 chr9 39336149 39336188 -102935256 + AT_rich Low_complexity Low_complexity 1 39 0 1935 143 7 0 chr9 39336361 39336662 -102934782 + AluSx SINE Alu 1 303 -9 320 0 25 0 chr9 39337072 39337112 -102934332 + (TG)n Simple_repeat Simple_repeat 2 42 0 758 261 38 11 chr9 39337276 39337537 -102933907 + L1MC5 LINE L1 6961 7228 -733 403 317 43 26 chr9 39337556 39337786 -102933658 + L2 LINE L2 1782 2015 -1299 858 210 88 93 chr9 39337794 39338113 -102933331 - MLT1H1 LTR MaLR -4 551 233 4598 101 39 49 chr9 39338113 39338887 -102932557 + MER4E LTR ERV1 1 766 0 858 210 88 93 chr9 39338887 39338963 -102932481 - MLT1H1 LTR MaLR -322 233 158 1943 89 33 36 chr9 39339099 39339260 -102932184 - AluY SINE Alu -8 303 142 2329 78 3 0 chr9 39339260 39339556 -102931888 - AluSp SINE Alu -16 297 1 1943 89 33 36 chr9 39339556 39339698 -102931746 - AluY SINE Alu -169 142 1 802 159 0 29 chr9 39339746 39339884 -102931560 - AluJo SINE Alu -177 135 2 1973 90 61 0 chr9 39339913 39340191 -102931253 + AluSp SINE Alu 1 295 -18 1991 143 0 0 chr9 39340554 39340861 -102930583 + AluSx SINE Alu 1 307 -5 500 315 153 18 chr9 39340868 39341201 -102930243 - MLT1K LTR MaLR -74 514 137 2133 84 7 13 chr9 39341267 39341566 -102929878 - AluSx SINE Alu -15 297 1 2128 103 3 7 chr9 39341573 39341873 -102929571 - AluSx SINE Alu -12 300 2 256 254 18 91 chr9 39341910 39342020 -102929424 + L2 LINE L2 3152 3253 -19 2320 174 28 13 chr9 39342782 39343242 -102928202 - MLT1C LTR MaLR 0 467 1 400 238 20 20 chr9 39343618 39343719 -102927725 + MIR SINE MIR 102 202 -60 206 78 59 20 chr9 39343723 39343774 -102927670 + (TA)n Simple_repeat Simple_repeat 1 53 0 2223 108 0 0 chr9 39343922 39344228 -102927216 + AluSx SINE Alu 1 306 -6 1661 148 3 18 chr9 39344778 39344924 -102926520 - AluSx SINE Alu -32 280 138 2313 67 3 0 chr9 39344924 39345221 -102926223 - AluY SINE Alu -12 299 2 1661 148 3 18 chr9 39345221 39345358 -102926086 - AluSx SINE Alu -174 138 1 1186 225 20 49 chr9 39345521 39345607 -102925837 - L1ME3 LINE L1 -38 6124 6037 2236 82 0 38 chr9 39345607 39345925 -102925519 + AluSp SINE Alu 1 306 -7 1186 225 20 49 chr9 39345925 39346287 -102925157 - L1ME3 LINE L1 -125 6037 5514 923 184 0 0 chr9 39346289 39346447 -102924997 + FRAM SINE Alu 1 158 -18 371 197 0 0 chr9 39346448 39346519 -102924925 - L1ME3 LINE L1 -637 5525 5455 2321 82 3 0 chr9 39347473 39347776 -102923668 - AluSp SINE Alu -9 304 1 2134 92 3 32 chr9 39347840 39348154 -102923290 - AluSx SINE Alu -7 305 1 235 305 122 23 chr9 39348336 39348467 -102922977 + MIR3 SINE MIR 3 146 -62 244 293 181 0 chr9 39348492 39348608 -102922836 - MIR SINE MIR -56 206 70 211 292 28 14 chr9 39348670 39348742 -102922702 - L2 LINE L2 0 3313 3241 2196 84 7 7 chr9 39348815 39349113 -102922331 + AluSx SINE Alu 2 299 -13 1898 146 7 0 chr9 39349146 39349441 -102922003 - AluY SINE Alu -14 297 1 2369 52 16 0 chr9 39349736 39350041 -102921403 - AluY SINE Alu -1 310 1 2189 103 0 6 chr9 39350060 39350372 -102921072 - AluSx SINE Alu -1 311 2 216 152 0 0 chr9 39350708 39350741 -102920703 - MER5B DNA MER1_type -3 175 143 1076 201 92 22 chr9 39350774 39351047 -102920397 + L1ME3 LINE L1 5804 6095 -67 284 332 36 67 chr9 39351626 39351819 -102919625 + L3 LINE CR1 1156 1342 -235 578 135 22 0 chr9 39351840 39351956 -102919488 + AluSg/x SINE Alu 189 306 0 180 260 55 14 chr9 39352378 39352451 -102918993 - MIR SINE MIR -48 214 139 2015 116 13 3 chr9 39352584 39352886 -102918558 - AluSg SINE Alu -5 305 1 335 270 11 34 chr9 39352906 39352995 -102918449 + L2 LINE L2 3186 3272 0 1865 133 7 0 chr9 39353099 39353392 -102918052 - AluSx SINE Alu -17 295 1 255 310 14 0 chr9 39353580 39353651 -102917793 + CT-rich Low_complexity Low_complexity 1 72 0 188 317 0 0 chr9 39353703 39353744 -102917700 - L2 LINE L2 -91 3181 3141 520 218 68 38 chr9 39354046 39354179 -102917265 - MIR3 SINE MIR -7 201 65 2259 99 0 0 chr9 39354242 39354544 -102916900 - AluSc SINE Alu -7 302 1 610 119 8 10 chr9 39354710 39354971 -102916473 + AluSx SINE Alu 1 309 -3 2294 79 3 13 chr9 39354981 39355285 -102916159 + AluSp SINE Alu 1 301 -12 353 274 32 11 chr9 39355285 39355373 -102916071 + L1MC4 LINE L1 6612 6704 -1338 352 220 44 55 chr9 39355294 39355385 -102916059 - L1MC4 LINE L1 -1339 6703 6614 * 338 86 76 19 chr9 39355386 39355491 -102915953 + (TA)n Simple_repeat Simple_repeat 1 111 0 355 228 71 86 chr9 39355495 39355724 -102915720 + L1MC4 LINE L1 1948 6989 -1333 1815 156 0 7 chr9 39355724 39356019 -102915425 + AluJb SINE Alu 1 293 -19 241 178 0 0 chr9 39356052 39356097 -102915347 - MER113 DNA MER1_type? -473 48 4 1180 147 6 0 chr9 39356151 39356321 -102915123 + FAM SINE Alu 1 171 -4 2384 62 3 16 chr9 39356554 39356861 -102914583 - AluSp SINE Alu -9 304 2 319 194 15 0 chr9 39356962 39357038 -102914406 + MIR SINE MIR 45 121 -87 279 288 0 0 chr9 39357088 39357161 -102914283 + GA-rich Low_complexity Low_complexity 1 73 0 479 331 36 57 chr9 39357439 39357687 -102913757 + L2 LINE L2 3028 3270 -2 255 347 54 20 chr9 39357719 39357866 -102913578 + L3 LINE CR1 1178 1329 -248 1158 148 72 10 chr9 39357869 39358078 -102913366 + AluSg/x SINE Alu 82 303 -9 325 317 42 33 chr9 39358092 39358212 -102913232 + MER91A DNA MER1_type 69 189 -7 * 426 270 68 7 chr9 39358207 39358355 -102913089 + MIR SINE MIR 35 191 -71 1268 151 0 148 chr9 39358362 39358484 -102912960 + AluJo SINE Alu 1 139 -173 2447 47 0 0 chr9 39358484 39358784 -102912660 + AluY SINE Alu 1 300 -11 1268 151 0 148 chr9 39358784 39358816 -102912628 + AluJo SINE Alu 139 174 -138 1542 173 39 3 chr9 39358816 39359099 -102912345 - AluJb SINE Alu -19 293 1 2148 108 0 0 chr9 39359103 39359398 -102912046 - AluSx SINE Alu -17 295 1 1268 151 0 148 chr9 39359398 39359569 -102911875 + AluJo SINE Alu 177 283 -29 2158 78 0 3 chr9 39359653 39359967 -102911477 - AluSp SINE Alu 0 313 1 206 204 0 20 chr9 39360273 39360322 -102911122 + MIR3 SINE MIR 150 197 -11 2400 67 0 6 chr9 39360576 39360891 -102910553 - AluSp SINE Alu 0 313 1 836 179 0 73 chr9 39360894 39361073 -102910371 - AluJo/FRAM SINE Alu 0 302 137 1320 123 27 69 chr9 39361076 39361336 -102910108 - AluSx SINE Alu -2 310 62 2161 98 16 0 chr9 39361350 39361655 -102909789 - AluSg SINE Alu 0 310 1 834 114 99 0 chr9 39361655 39361786 -102909658 - AluSq/x SINE Alu -169 144 1 2131 82 0 41 chr9 39361939 39362255 -102909189 + AluSc SINE Alu 1 303 -6 1887 117 14 7 chr9 39362282 39362565 -102908879 + AluSx SINE Alu 1 285 -27 351 0 0 0 chr9 39362565 39362604 -102908840 + (CA)n Simple_repeat Simple_repeat 2 40 0 327 130 0 0 chr9 39362710 39362764 -102908680 + (CCCCCT)n Simple_repeat Simple_repeat 6 59 0 1625 157 29 4 chr9 39362764 39363045 -102908399 - AluSx SINE Alu -10 302 15 979 103 34 0 chr9 39363078 39363255 -102908189 - AluSg/x SINE Alu 0 313 132 2129 114 0 0 chr9 39363255 39363552 -102907892 - AluSx SINE Alu -9 303 7 264 268 202 16 chr9 39363582 39363765 -102907679 + MER102a DNA MER1_type 87 303 -27 563 261 34 79 chr9 39364461 39364624 -102906820 + L1MA10 LINE L1 5959 6128 -201 1843 149 0 42 chr9 39364624 39364771 -102906673 + AluJb SINE Alu 1 130 -172 1765 126 49 14 chr9 39364771 39364906 -102906538 + AluSx SINE Alu 1 130 -182 2240 103 0 0 chr9 39364906 39365208 -102906236 + AluSc SINE Alu 1 302 -7 1765 126 49 14 chr9 39365208 39365357 -102906087 + AluSx SINE Alu 130 295 -17 1843 149 0 42 chr9 39365357 39365518 -102905926 + AluJb SINE Alu 130 296 -6 563 261 34 79 chr9 39365518 39365570 -102905874 + L1MA10 LINE L1 6128 6324 -5 233 86 0 0 chr9 39365541 39365576 -102905868 + L1MA9 LINE L1 6278 6312 0 * 787 230 117 60 chr9 39365590 39365779 -102905665 + Charlie7 DNA MER1_type 1807 1984 -628 2397 84 0 23 chr9 39365779 39366089 -102905355 - AluY SINE Alu -8 303 1 2260 118 0 16 chr9 39366091 39366266 -102905178 - AluSx SINE Alu -4 308 139 2426 81 3 10 chr9 39366266 39366573 -102904871 - AluSq SINE Alu -8 305 1 2260 118 0 16 chr9 39366573 39366710 -102904734 - AluSx SINE Alu -173 139 1 787 230 117 60 chr9 39366710 39366952 -102904492 + Charlie7 DNA MER1_type 1984 2266 -346 1294 147 0 0 chr9 39366970 39367154 -102904290 + AluSg/x SINE Alu 116 299 -13 38 75 0 0 chr9 39367277 39367357 -102904087 + AT_rich Low_complexity Low_complexity 1 80 0 2254 92 0 27 chr9 39367370 39367708 -102903736 - AluSp SINE Alu 0 330 1 2054 84 29 4 chr9 39367712 39368045 -102903399 - AluSc SINE Alu 0 340 1 568 236 150 7 chr9 39368047 39368187 -102903257 - AluJo SINE Alu -6 296 137 1168 177 0 56 chr9 39368241 39368473 -102902971 - AluJo SINE Alu -92 220 2 271 302 0 0 chr9 39368907 39368970 -102902474 + L2 LINE L2 3169 3231 -41 258 248 128 9 chr9 39369045 39369154 -102902290 + LTR67 LTR ERVL 436 557 0 2404 74 0 14 chr9 39369209 39369505 -102901939 - AluSq SINE Alu -21 292 1 378 280 34 80 chr9 39369682 39369983 -102901461 + L1M4 LINE L1 2248 3102 -3044 789 135 0 57 chr9 39370122 39370263 -102901181 - AluJo SINE Alu -169 133 1 2503 71 10 0 chr9 39370277 39370585 -102900859 - AluSp SINE Alu -2 311 1 1878 143 11 0 chr9 39370587 39370867 -102900577 - AluJo SINE Alu -19 293 11 1667 130 8 50 chr9 39371170 39371431 -102900013 - AluSx SINE Alu -14 298 49 1977 117 19 49 chr9 39371637 39371773 -102899671 + AluSx SINE Alu 1 139 -173 2477 100 0 0 chr9 39371773 39372083 -102899361 + AluSx SINE Alu 1 310 -2 1977 117 19 49 chr9 39372083 39372253 -102899191 + AluSx SINE Alu 139 298 -14 1137 143 6 0 chr9 39372253 39372428 -102899016 + AluSg/x SINE Alu 134 309 -3 2193 82 14 4 chr9 39372433 39372739 -102898705 + AluSc SINE Alu 1 309 0 2010 148 0 14 chr9 39372878 39373169 -102898275 - AluSx SINE Alu -25 287 1 291 241 111 9 chr9 39373209 39373317 -102898127 - MLT1J2 LTR MaLR -38 412 294 271 138 50 125 chr9 39373405 39373485 -102897959 - MLT2C1 LTR ERVL -212 185 112 1397 118 5 0 chr9 39373587 39373773 -102897671 + AluSp SINE Alu 112 298 -15 4179 92 4 0 chr9 39373875 39374427 -102897017 - MER41A LTR ERV1 0 554 1 2037 131 0 0 chr9 39374480 39374770 -102896674 - AluSx SINE Alu -22 290 1 1397 148 32 0 chr9 39374856 39375073 -102896371 + AluSg/x SINE Alu 73 296 -16 2186 119 6 6 chr9 39375075 39375386 -102896058 + AluSq SINE Alu 1 311 -2 2109 146 8 26 chr9 39375391 39375768 -102895676 - MER41B LTR ERV1 -136 499 130 2342 104 0 3 chr9 39375834 39376141 -102895303 - AluSg SINE Alu -4 306 1 343 90 124 22 chr9 39376142 39376231 -102895213 - L1M LINE L1 -2414 5394 5297 2359 56 0 14 chr9 39376235 39376544 -102894900 - AluY SINE Alu 0 305 1 2447 74 0 0 chr9 39376544 39376840 -102894604 - AluY SINE Alu -12 299 4 2035 208 73 40 chr9 39377009 39377528 -102893916 + MLT2B3 LTR ERVL 1 536 -18 985 124 0 96 chr9 39377530 39377708 -102893736 - AluSg/x SINE Alu -15 295 135 566 150 63 0 chr9 39377709 39377772 -102893672 + L1MD1 LINE L1 6107 6165 -77 1961 164 0 7 chr9 39377772 39378101 -102893343 - AluJb SINE Alu 0 312 1 566 150 63 0 chr9 39378101 39378164 -102893280 + L1MD1 LINE L1 6165 6241 -1 384 323 140 0 chr9 39378230 39378394 -102893050 - L1ME4a LINE L1 -94 6027 5841 389 184 149 0 chr9 39378396 39378483 -102892961 + MER53 DNA DNA 1 100 -89 2185 117 10 0 chr9 39378651 39378941 -102892503 - AluSg SINE Alu -11 299 7 1995 115 3 21 chr9 39378941 39379228 -102892216 - AluSx SINE Alu -30 282 1 1917 131 21 7 chr9 39379234 39379524 -102891920 - AluSx SINE Alu -18 294 1 25 31 0 0 chr9 39379645 39379677 -102891767 + AT_rich Low_complexity Low_complexity 1 32 0 2419 89 3 0 chr9 39379686 39379988 -102891456 + AluSp SINE Alu 1 303 -10 861 210 0 25 chr9 39379988 39380145 -102891299 - FRAM SINE Alu -27 149 1 269 234 109 34 chr9 39380145 39380292 -102891152 + MIR SINE MIR 103 261 -1 1242 176 38 86 chr9 39380362 39380675 -102890769 - AluJo SINE Alu -3 299 2 2388 78 0 33 chr9 39380679 39380985 -102890459 - AluY SINE Alu -15 296 1 2254 116 3 3 chr9 39380989 39381291 -102890153 - AluSx SINE Alu -10 302 1 288 259 111 28 chr9 39382134 39382242 -102889202 + L2 LINE L2 3197 3313 0 2067 114 11 4 chr9 39382384 39382697 -102888747 + AluSx SINE Alu 1 315 0 2146 109 41 0 chr9 39382720 39383013 -102888431 + AluSg SINE Alu 1 305 -5 2121 99 14 0 chr9 39383055 39383337 -102888107 - AluSp SINE Alu -14 299 14 6621 120 17 10 chr9 39383346 39383972 -102887472 + Tigger1 DNA MER2_type 218 857 -1561 2307 75 3 36 chr9 39383972 39384280 -102887164 + AluSp SINE Alu 1 298 -15 6621 120 17 10 chr9 39384280 39384692 -102886752 + Tigger1 DNA MER2_type 857 1264 -1154 824 230 0 0 chr9 39384693 39384865 -102886579 - FRAM SINE Alu 0 169 1 5911 122 24 14 chr9 39384865 39385205 -102886239 + Tigger1 DNA MER2_type 1248 1583 -835 2514 67 0 3 chr9 39385205 39385505 -102885939 + AluY SINE Alu 1 299 -12 5911 122 24 14 chr9 39385505 39386108 -102885336 + Tigger1 DNA MER2_type 1583 2200 -218 369 145 0 0 chr9 39386108 39386170 -102885274 + MER57A LTR ERV1 1 62 -341 514 101 0 22 chr9 39386185 39386274 -102885170 + (TTCCC)n Simple_repeat Simple_repeat 3 89 0 1985 129 6 32 chr9 39386291 39386602 -102884842 - AluSx SINE Alu -9 303 1 1370 186 11 74 chr9 39386602 39386968 -102884476 + MER57A LTR ERV1 54 396 -7 1323 80 23 6 chr9 39386969 39387144 -102884300 + AluJo SINE Alu 1 178 -134 232 252 210 28 chr9 39387144 39387358 -102884086 - Charlie2 DNA MER1_type -2583 279 27 29 28 0 0 chr9 39387509 39387545 -102883899 + GC_rich Low_complexity Low_complexity 1 36 0 381 322 42 0 chr9 39387792 39387935 -102883509 + MIR SINE MIR 29 177 -85 2413 76 0 3 chr9 39388199 39388501 -102882943 - AluSq SINE Alu -12 301 1 2049 106 0 64 chr9 39388997 39389326 -102882118 + AluSx SINE Alu 1 308 -4 2368 87 7 3 chr9 39389549 39389849 -102881595 + AluSg1 SINE Alu 1 301 -8 200 194 0 0 chr9 39390277 39390313 -102881131 + GA-rich Low_complexity Low_complexity 4 39 0 2206 113 0 3 chr9 39391225 39391526 -102879918 - AluSx SINE Alu -12 300 1 510 57 14 14 chr9 39391927 39391997 -102879447 + Alu SINE Alu 2 71 -247 2127 120 0 17 chr9 39392192 39392484 -102878960 - AluSx SINE Alu -25 287 1 741 275 77 62 chr9 39392586 39393055 -102878389 + MLT1K LTR MaLR 1 476 0 589 198 85 28 chr9 39393068 39393245 -102878199 + MLT1G3 LTR MaLR 7 193 -402 817 219 227 0 chr9 39393256 39393494 -102877950 + MLT1G3 LTR MaLR 144 435 -95 1107 119 0 13 chr9 39393494 39393645 -102877799 - AluSg/x SINE Alu -82 228 80 327 127 0 32 chr9 39393665 39393728 -102877716 + MLT1G3 LTR MaLR 481 541 -1 2050 138 3 10 chr9 39393787 39394099 -102877345 + AluSx SINE Alu 1 310 -2 2224 134 0 0 chr9 39394833 39395131 -102876313 - AluSx SINE Alu -12 300 3 429 193 0 0 chr9 39395136 39395219 -102876225 - L1ME2 LINE L1 -7 6157 6075 1978 120 47 97 chr9 39395222 39395321 -102876123 + THE1B LTR MaLR 1 103 -261 2351 94 0 3 chr9 39395321 39395618 -102875826 - AluSc SINE Alu -13 296 1 1978 120 47 97 chr9 39395618 39395684 -102875760 + THE1B LTR MaLR 103 171 -193 2219 89 3 33 chr9 39395684 39395987 -102875457 - AluY SINE Alu -17 294 1 1978 120 47 97 chr9 39395987 39396203 -102875241 + THE1B LTR MaLR 171 364 0 9941 81 78 34 chr9 39396203 39396633 -102874811 + THE1B-int LTR MaLR 1 410 -1170 2096 161 3 0 chr9 39396633 39396944 -102874500 - AluSx SINE Alu 0 312 1 9941 81 78 34 chr9 39396944 39396959 -102874485 + THE1B-int LTR MaLR 410 423 -1157 2161 125 10 0 chr9 39396959 39397255 -102874189 - AluSx SINE Alu -13 299 1 9941 81 78 34 chr9 39397255 39398321 -102873123 + THE1B-int LTR MaLR 423 1580 0 668 109 146 0 chr9 39398321 39398431 -102873013 + THE1B LTR MaLR 1 126 -238 2219 104 3 10 chr9 39398432 39398729 -102872715 - AluSx SINE Alu -7 305 11 2283 116 13 0 chr9 39398763 39399065 -102872379 - AluSx SINE Alu -6 306 1 3110 157 27 77 chr9 39399072 39399302 -102872142 - MER6 DNA MER2_type -168 697 457 2095 111 27 3 chr9 39399302 39399599 -102871845 - AluSg SINE Alu -6 304 1 3110 157 27 77 chr9 39399599 39399703 -102871741 - MER6 DNA MER2_type -408 457 349 2314 78 41 0 chr9 39399703 39399998 -102871446 - AluY SINE Alu -4 307 1 3110 157 27 77 chr9 39399998 39400355 -102871089 - MER6 DNA MER2_type -516 349 52 2034 137 0 10 chr9 39400355 39400654 -102870790 + AluJo SINE Alu 1 296 -16 3110 157 27 77 chr9 39400654 39400701 -102870743 - MER6 DNA MER2_type -813 52 4 2469 63 0 16 chr9 39400744 39401047 -102870397 - AluY SINE Alu -13 298 1 244 154 46 0 chr9 39401050 39401122 -102870322 - L1M LINE L1 -780 5384 5306 533 225 179 7 chr9 39401370 39401521 -102869923 - MER5B DNA MER1_type -1 177 1 2262 109 0 10 chr9 39401692 39402003 -102869441 + AluSg SINE Alu 1 308 -2 1101 200 55 65 chr9 39402280 39402590 -102868854 + MER58B DNA MER1_type 1 307 -34 727 130 19 0 chr9 39402602 39402710 -102868734 - AluJb SINE Alu -201 111 2 2218 104 7 7 chr9 39402970 39403268 -102868176 - AluSp SINE Alu -15 298 1 5505 46 0 25 chr9 39403326 39403456 -102867988 + L1PA5 LINE L1 5480 5612 -542 2514 63 0 3 chr9 39403456 39403755 -102867689 + AluY SINE Alu 1 298 -13 5505 46 0 25 chr9 39403755 39404314 -102867130 + L1PA5 LINE L1 5612 6152 -2 906 261 0 0 chr9 39404546 39404726 -102866718 + MER5A DNA MER1_type 4 183 -6 2136 116 7 10 chr9 39404825 39404959 -102866485 + AluSx SINE Alu 1 134 -178 2513 42 3 13 chr9 39404959 39405268 -102866176 + AluY SINE Alu 1 306 -5 2136 116 7 10 chr9 39405268 39405434 -102866010 + AluSx SINE Alu 134 300 -12 974 151 0 0 chr9 39405443 39405608 -102865836 + AluSg/x SINE Alu 142 306 0 457 69 0 0 chr9 39405613 39405671 -102865773 + Alu SINE Alu 2 59 -250 407 131 0 0 chr9 39406367 39406428 -102865016 - AluSc SINE Alu -15 294 234 2312 117 0 0 chr9 39406463 39406772 -102864672 - AluSg SINE Alu -1 309 1 1067 112 0 0 chr9 39406774 39406917 -102864527 - FRAM SINE Alu -16 160 18 2352 92 0 0 chr9 39407122 39407415 -102864029 + AluSc SINE Alu 1 293 -16 473 210 90 0 chr9 39407483 39407583 -102863861 + MER33 DNA MER1_type 1 109 -215 2409 97 3 0 chr9 39407583 39407893 -102863551 - AluSp SINE Alu -2 311 1 714 131 0 0 chr9 39408541 39408640 -102862804 + AluY SINE Alu 2 100 -211 2152 77 14 11 chr9 39408641 39408927 -102862517 + AluY SINE Alu 24 310 -1 2353 105 3 6 chr9 39408937 39409251 -102862193 + AluSp SINE Alu 1 313 0 359 92 118 144 chr9 39409251 39409281 -102862163 + MER33 DNA MER1_type 133 162 -2423 1432 194 61 22 chr9 39409281 39409559 -102861885 + AluJo SINE Alu 2 290 -22 359 92 118 144 chr9 39409559 39409681 -102861763 + MER33 DNA MER1_type 162 281 -43 828 107 0 0 chr9 39409681 39409793 -102861651 + AluSg/x SINE Alu 195 306 -3 271 146 21 0 chr9 39409793 39409841 -102861603 + MER33 DNA MER1_type 315 363 0 2169 114 14 0 chr9 39410121 39410418 -102861026 - AluSx SINE Alu -5 307 7 970 234 40 63 chr9 39410428 39410778 -102860666 - MER20B DNA MER1_type -283 500 159 648 199 23 34 chr9 39410837 39411013 -102860431 - L1MD2 LINE L1 -11 6348 6175 514 261 13 26 chr9 39411013 39411166 -102860278 - L1MD2 LINE L1 -144 6215 6065 807 241 5 0 chr9 39411182 39411373 -102860071 + L1PBa LINE L1 6 197 -6666 * 5313 123 31 40 chr9 39411370 39412301 -102859143 + L1PBa LINE L1 1392 2315 -4548 2302 112 3 7 chr9 39412301 39412606 -102858838 + AluSx SINE Alu 1 304 -8 5313 123 31 40 chr9 39412606 39412665 -102858779 + L1PBa LINE L1 2315 2373 -4490 2358 89 3 0 chr9 39412666 39412958 -102858486 - AluSp SINE Alu -20 293 1 630 111 0 0 chr9 39412982 39413081 -102858363 - AluSp/q SINE Alu 0 313 215 1668 201 32 50 chr9 39413082 39413226 -102858218 - L1MD2 LINE L1 -469 5890 5745 1748 181 10 7 chr9 39413226 39413519 -102857925 + AluJb SINE Alu 1 294 -18 1668 201 32 50 chr9 39413519 39413684 -102857760 - L1MD2 LINE L1 -614 5745 5589 2487 93 0 0 chr9 39413684 39413994 -102857450 + AluSg SINE Alu 1 310 0 1668 201 32 50 chr9 39413994 39414121 -102857323 - L1MD2 LINE L1 -770 5589 5461 225 329 14 0 chr9 39414129 39414202 -102857242 - MER20B DNA MER1_type -708 75 2 717 269 6 6 chr9 39414209 39414384 -102857060 - MER5B DNA MER1_type -3 175 1 2074 122 4 0 chr9 39414458 39414729 -102856715 + AluSg SINE Alu 1 272 -38 2168 134 0 0 chr9 39415033 39415331 -102856113 + AluSx SINE Alu 3 300 -12 401 322 29 6 chr9 39415331 39415491 -102855953 + MIR SINE MIR 37 202 -60 2078 117 7 27 chr9 39415639 39415939 -102855505 + AluSx SINE Alu 1 294 -18 1945 128 29 4 chr9 39415939 39416220 -102855224 + AluSq SINE Alu 1 288 -25 2479 49 0 49 chr9 39416229 39416543 -102854901 + AluY SINE Alu 1 300 -11 183 42 0 0 chr9 39416543 39416567 -102854877 + (CA)n Simple_repeat Simple_repeat 2 25 0 2479 49 0 49 chr9 39416567 39416579 -102854865 + AluY SINE Alu 300 311 0 217 0 0 0 chr9 39416601 39416625 -102854819 + (TTTA)n Simple_repeat Simple_repeat 1 180 0 821 154 0 0 chr9 39416625 39416743 -102854701 - FLAM_C SINE Alu -1 141 1 275 235 113 69 chr9 39416764 39416857 -102854587 - MER5A DNA MER1_type -6 183 69 1962 134 20 13 chr9 39416857 39417019 -102854425 - AluJb SINE Alu -11 301 135 2223 94 14 10 chr9 39417019 39417316 -102854128 - AluSg SINE Alu -12 298 1 1962 134 20 13 chr9 39417316 39417452 -102853992 - AluJb SINE Alu -177 135 1 275 235 113 69 chr9 39417452 39417516 -102853928 - MER5A DNA MER1_type -120 69 9 1150 250 68 62 chr9 39417528 39417766 -102853678 - L1MC5 LINE L1 -90 7871 7636 2474 84 0 0 chr9 39417766 39418077 -102853367 - AluY SINE Alu 0 311 1 1150 250 68 62 chr9 39418077 39418182 -102853262 - L1MC5 LINE L1 -325 7636 7533 2169 113 30 0 chr9 39418182 39418482 -102852962 - AluSg SINE Alu -1 309 1 1150 250 68 62 chr9 39418482 39418754 -102852690 - L1MC5 LINE L1 -428 7533 7251 1978 123 0 24 chr9 39418996 39419325 -102852119 - AluSx SINE Alu 0 322 1 1021 153 59 64 chr9 39419336 39419538 -102851906 - AluJb SINE Alu -23 289 89 594 190 91 0 chr9 39419560 39419681 -102851763 + FLAM_C SINE Alu 1 132 -1 1139 99 76 0 chr9 39419694 39419866 -102851578 + AluSp SINE Alu 3 187 -126 457 95 0 0 chr9 39419868 39419931 -102851513 + AluSp SINE Alu 55 117 -196 496 139 0 0 chr9 39419931 39420003 -102851441 + AluSc SINE Alu 176 247 -62 1174 153 10 24 chr9 39420004 39420213 -102851231 + AluSg/x SINE Alu 83 288 -22 21 36 0 0 chr9 39420216 39420244 -102851200 + AT_rich Low_complexity Low_complexity 1 28 0 845 189 13 13 chr9 39420251 39420410 -102851034 + FRAM SINE Alu 1 159 -17 2375 112 0 0 chr9 39420730 39421042 -102850402 - AluSx SINE Alu 0 312 1 1297 121 5 5 chr9 39421052 39421242 -102850202 - AluSq SINE Alu -3 310 121 1017 138 24 0 chr9 39421242 39421409 -102850035 - AluSg/x SINE Alu -10 302 132 290 25 0 25 chr9 39421409 39421449 -102849995 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1458 107 9 37 chr9 39421449 39421665 -102849779 - AluSq SINE Alu -29 284 75 1838 143 3 17 chr9 39423019 39423320 -102848124 + AluSx SINE Alu 1 297 -15 1121 167 4 66 chr9 39423343 39423436 -102848008 - AluJo SINE Alu -99 213 116 2333 85 7 10 chr9 39423436 39423742 -102847702 - AluSp SINE Alu -8 305 1 1121 167 4 66 chr9 39423742 39423875 -102847569 - AluJo SINE Alu -196 116 1 251 221 86 71 chr9 39423940 39424080 -102847364 - L1 LINE L1 -1093 5053 4912 2162 95 0 27 chr9 39424644 39424798 -102846646 - AluSg SINE Alu -24 286 129 255 31 0 0 chr9 39424798 39424830 -102846614 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2328 78 3 0 chr9 39424833 39425116 -102846328 - AluSp SINE Alu -29 284 1 2162 95 0 27 chr9 39425116 39425251 -102846193 - AluSg SINE Alu -183 127 1 556 243 54 14 chr9 39425274 39425422 -102846022 + L2 LINE L2 3160 3313 0 21 57 0 0 chr9 39425649 39425684 -102845760 + AT_rich Low_complexity Low_complexity 1 35 0 1996 120 65 0 chr9 39425825 39426117 -102845327 - AluY SINE Alu 0 311 1 2241 97 7 0 chr9 39426117 39426407 -102845037 - AluSq SINE Alu -21 292 1 22 0 0 0 chr9 39426414 39426436 -102845008 + AT_rich Low_complexity Low_complexity 1 22 0 234 175 0 0 chr9 39426438 39426478 -102844966 - MER57A LTR ERV1 -68 335 296 497 223 141 71 chr9 39426479 39426519 -102844925 - L1M4 LINE L1 -757 5389 5353 2305 97 0 3 chr9 39426519 39426817 -102844627 - AluSg SINE Alu -13 297 1 497 223 141 71 chr9 39426817 39426993 -102844451 - L1M4 LINE L1 -793 5353 5191 587 142 150 0 chr9 39426993 39427106 -102844338 - FLAM_A SINE Alu -3 130 1 497 223 141 71 chr9 39427106 39427336 -102844108 - L1M4 LINE L1 -955 5191 4911 248 227 0 0 chr9 39427694 39427738 -102843706 - L2 LINE L2 -511 2803 2760 2545 49 10 13 chr9 39427751 39428055 -102843389 - AluY SINE Alu -6 305 3 595 227 57 74 chr9 39428069 39428298 -102843146 - L2 LINE L2 -535 2779 2555 338 191 79 95 chr9 39428337 39428463 -102842981 - L1ME3 LINE L1 -2 6160 6037 723 238 103 5 chr9 39428499 39428713 -102842731 - L2 LINE L2 -775 2539 2305 2574 54 0 0 chr9 39428765 39429062 -102842382 - AluY SINE Alu -14 297 1 24 0 0 0 chr9 39429338 39429362 -102842082 + AT_rich Low_complexity Low_complexity 1 24 0 2706 39 0 0 chr9 39429785 39430094 -102841350 - AluY SINE Alu -2 309 1 2283 83 0 49 chr9 39430096 39430422 -102841022 - AluY SINE Alu -1 310 1 1599 204 7 3 chr9 39430509 39430808 -102840636 - AluJo SINE Alu -12 300 1 326 287 25 25 chr9 39430880 39431002 -102840442 - L3 LINE CR1 -111 1466 1345 2329 116 3 0 chr9 39431085 39431396 -102840048 - AluSx SINE Alu 0 312 1 1804 170 3 7 chr9 39431444 39431733 -102839711 + AluJo SINE Alu 1 288 -24 782 206 55 47 chr9 39431750 39431848 -102839596 - Charlie2 DNA MER1_type -677 2185 2089 1876 159 3 7 chr9 39431848 39432149 -102839295 + AluJb SINE Alu 1 300 -12 782 206 55 47 chr9 39432149 39432303 -102839141 - Charlie2 DNA MER1_type -773 2089 1931 2174 66 48 4 chr9 39432644 39432938 -102838506 - AluY SINE Alu 0 306 1 2198 113 0 0 chr9 39433103 39433395 -102838049 - AluSg SINE Alu -9 301 10 1127 56 126 0 chr9 39433410 39433553 -102837891 - AluSp SINE Alu -19 294 134 1839 107 50 33 chr9 39433553 39433852 -102837592 - AluSg SINE Alu -2 308 5 2064 88 34 44 chr9 39433863 39434159 -102837285 - AluSp SINE Alu -20 293 1 2338 91 3 0 chr9 39434172 39434468 -102836976 - AluSp SINE Alu -16 297 1 301 185 49 25 chr9 39434576 39434657 -102836787 - L1MC4 LINE L1 0 8042 7960 235 337 143 10 chr9 39434665 39434861 -102836583 - L3 LINE CR1 -459 1118 897 2352 65 7 3 chr9 39434944 39435236 -102836208 - AluY SINE Alu -18 293 1 2413 80 3 0 chr9 39435710 39436009 -102835435 - AluY SINE Alu -11 300 1 1666 192 32 21 chr9 39436028 39436367 -102835077 - MLT1C LTR MaLR 0 467 125 1628 168 0 53 chr9 39436598 39436902 -102834542 + AluJo SINE Alu 16 303 -9 1970 151 0 3 chr9 39437080 39437378 -102834066 + AluJb SINE Alu 1 297 -15 1713 150 42 24 chr9 39437438 39437725 -102833719 + AluJo SINE Alu 1 292 -20 734 179 0 22 chr9 39437803 39437937 -102833507 - AluJo SINE Alu -177 135 5 2219 115 3 10 chr9 39437953 39438266 -102833178 - AluSx SINE Alu -1 311 1 1016 181 63 82 chr9 39438585 39438888 -102832556 - L1ME2 LINE L1 -9 6155 5859 227 236 55 91 chr9 39438912 39439022 -102832422 - L1ME2 LINE L1 -1934 5874 5769 2048 180 20 8 chr9 39439038 39439393 -102832051 + MLT1A1 LTR MaLR 7 365 0 425 179 45 134 chr9 39439393 39439459 -102831985 - L1ME2 LINE L1 -2070 5738 5668 267 31 0 0 chr9 39439459 39439491 -102831953 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2099 63 71 4 chr9 39439493 39439761 -102831683 - AluSg SINE Alu -24 286 1 425 179 45 134 chr9 39439761 39439870 -102831574 - L1ME2 LINE L1 -2141 5667 5576 1561 127 0 0 chr9 39440714 39440934 -102830510 - AluSx SINE Alu -10 300 81 2425 62 0 3 chr9 39440935 39441225 -102830219 - AluY SINE Alu -22 289 1 596 160 0 0 chr9 39441226 39441320 -102830124 - AluSx SINE Alu -217 95 2 1290 127 6 6 chr9 39441395 39441576 -102829868 - AluJb SINE Alu -11 301 121 2019 156 0 0 chr9 39441598 39441905 -102829539 - AluSx SINE Alu -5 307 1 2275 42 0 8 chr9 39442082 39442346 -102829098 - AluY SINE Alu -49 262 1 2420 96 3 0 chr9 39442363 39442675 -102828769 - AluSp SINE Alu 0 313 1 676 197 7 22 chr9 39442788 39442925 -102828519 - AluJo SINE Alu -176 136 2 2405 89 0 19 chr9 39444802 39445117 -102826327 + AluSx SINE Alu 1 309 -3 245 278 90 38 chr9 39445294 39445427 -102826017 - L2 LINE L2 0 3272 3133 2042 100 52 0 chr9 39445874 39446169 -102825275 - AluSx SINE Alu 0 309 1 2373 74 0 7 chr9 39446177 39446474 -102824970 - AluY SINE Alu -16 295 1 2313 217 39 25 chr9 39446672 39447284 -102824160 - L1MC4 LINE L1 0 8042 7422 4137 139 6 3 chr9 39447348 39447996 -102823448 - L1MB2 LINE L1 -2 6169 5520 2335 104 10 0 chr9 39448000 39448298 -102823146 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr9 39448350 39448371 -102823073 + AT_rich Low_complexity Low_complexity 1 21 0 2395 90 3 0 chr9 39448510 39448809 -102822635 - AluSp SINE Alu -13 300 1 240 206 110 0 chr9 39448859 39448932 -102822512 - MIR SINE MIR -73 135 55 238 311 37 75 chr9 39449141 39449302 -102822142 - MER5A DNA MER1_type -29 160 6 1769 160 0 7 chr9 39449381 39449656 -102821788 - AluJo SINE Alu -11 301 29 2244 99 3 0 chr9 39449904 39450217 -102821227 - AluSp SINE Alu 0 316 3 1389 92 0 92 chr9 39450219 39450448 -102820996 - AluSx SINE Alu -3 309 102 852 78 0 0 chr9 39450500 39450603 -102820841 - AluSx SINE Alu -210 103 1 2106 132 3 0 chr9 39450604 39450893 -102820551 - AluSx SINE Alu -22 290 1 381 131 0 0 chr9 39450897 39450958 -102820486 - AluSp/q SINE Alu -1 302 242 1112 140 18 12 chr9 39450958 39451129 -102820315 - AluSx SINE Alu -130 182 11 1959 145 0 10 chr9 39451169 39451459 -102819985 - AluSx SINE Alu -22 290 4 249 138 0 46 chr9 39451740 39451805 -102819639 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 684 170 0 0 chr9 39451816 39451922 -102819522 + AluSg/x SINE Alu 196 301 -11 601 194 29 0 chr9 39452208 39452383 -102819061 + (TA)n Simple_repeat Simple_repeat 1 180 0 552 191 35 0 chr9 39452395 39452568 -102818876 + (TA)n Simple_repeat Simple_repeat 1 179 0 256 225 100 0 chr9 39452581 39452661 -102818783 + L1MC4 LINE L1 6614 6701 -1341 280 92 53 13 chr9 39452673 39452749 -102818695 + (TA)n Simple_repeat Simple_repeat 2 80 0 2247 101 0 0 chr9 39452749 39453035 -102818409 - AluSx SINE Alu -26 286 1 379 283 109 33 chr9 39453264 39453448 -102817996 + MIR3 SINE MIR 2 199 -9 562 202 142 87 chr9 39453673 39453824 -102817620 + L1ME3A LINE L1 5904 6045 -125 1783 130 20 68 chr9 39453824 39453949 -102817495 + MER44D DNA MER2_type 1 130 -2361 2640 49 7 0 chr9 39453949 39454254 -102817190 + AluY SINE Alu 1 307 -4 1783 130 20 68 chr9 39454254 39454482 -102816962 + MER44D DNA MER2_type 130 607 -2 562 202 142 87 chr9 39454482 39454533 -102816911 + L1ME3A LINE L1 6045 6092 -78 2488 70 0 3 chr9 39454533 39454833 -102816611 - AluSp SINE Alu -14 299 1 562 202 142 87 chr9 39454833 39454882 -102816562 + L1ME3A LINE L1 6092 6170 0 1003 153 110 3 chr9 39455041 39455249 -102816195 + L1MB7 LINE L1 5953 6183 0 1870 156 16 29 chr9 39455388 39455702 -102815742 - AluJb SINE Alu -2 310 1 290 343 15 7 chr9 39455927 39456064 -102815380 - L2 LINE L2 -219 3053 2916 1345 155 49 9 chr9 39456875 39457101 -102814343 + MER46A DNA MER2_type 2 236 0 335 234 75 11 chr9 39457423 39457517 -102813927 + MER5B DNA MER1_type 7 106 -72 636 179 55 0 chr9 39457544 39457689 -102813755 + MIR SINE MIR 70 222 -40 1980 132 4 0 chr9 39457703 39458021 -102813423 - AluSg SINE Alu 0 319 1 2183 133 3 0 chr9 39458036 39458344 -102813100 - AluSx SINE Alu -2 310 2 1960 102 15 4 chr9 39458349 39458615 -102812829 - AluSx SINE Alu -25 287 19 311 237 151 69 chr9 39458627 39458872 -102812572 - L1M4 LINE L1 -2391 3755 3491 569 263 74 71 chr9 39458882 39459226 -102812218 + L2 LINE L2 2699 3045 -268 218 233 0 0 chr9 39459230 39459273 -102812171 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1138 261 63 55 chr9 39459301 39460049 -102811395 - L2 LINE L2 -15 3298 2535 2117 115 7 0 chr9 39460050 39460345 -102811099 - AluSx SINE Alu -15 297 1 6160 63 13 42 chr9 39460381 39461244 -102810200 - SVA Other Other 0 1386 549 580 93 12 81 chr9 39461257 39461429 -102810015 - SVA Other Other -592 794 635 2759 88 38 90 chr9 39461458 39461958 -102809486 - SVA Other Other -520 866 393 417 227 31 10 chr9 39462123 39462220 -102809224 - L1ME1 LINE L1 -22 6144 6046 276 194 0 0 chr9 39462221 39462283 -102809161 - L2 LINE L2 -771 2543 2482 2269 113 3 0 chr9 39462337 39462638 -102808806 - AluSx SINE Alu -10 302 1 21 0 0 0 chr9 39462728 39462749 -102808695 + AT_rich Low_complexity Low_complexity 1 21 0 1234 236 137 34 chr9 39462774 39463189 -102808255 - L1MC4a LINE L1 -1865 5943 5486 1981 147 43 0 chr9 39463270 39463569 -102807875 - AluJo SINE Alu 0 312 1 1142 220 155 16 chr9 39463715 39463793 -102807651 - Charlie7 DNA MER1_type -1831 781 715 1745 180 14 10 chr9 39463793 39464088 -102807356 + AluJo SINE Alu 1 296 -16 2095 116 37 0 chr9 39464088 39464382 -102807062 + AluSx SINE Alu 5 309 -3 1142 220 155 16 chr9 39464382 39464729 -102806715 - Charlie7 DNA MER1_type -1896 716 296 385 174 51 61 chr9 39464764 39464862 -102806582 - Charlie7 DNA MER1_type -2429 183 87 2359 100 3 3 chr9 39464909 39465208 -102806236 - AluSx SINE Alu -13 299 1 698 247 12 6 chr9 39465962 39466128 -102805316 - MIR SINE MIR -95 167 1 184 316 0 41 chr9 39466350 39466448 -102804996 + MIR3 SINE MIR 114 207 -1 * 254 238 65 53 chr9 39466440 39466489 -102804955 - L3 LINE CR1 -752 825 778 2438 87 0 3 chr9 39466489 39466798 -102804646 - AluSg SINE Alu -2 308 1 254 238 65 53 chr9 39466798 39466937 -102804507 - L3 LINE CR1 -799 778 636 2265 114 0 19 chr9 39466938 39467254 -102804190 + AluSg SINE Alu 1 310 0 560 238 16 0 chr9 39467418 39467540 -102803904 - MIR SINE MIR -110 152 29 1000 218 38 0 chr9 39468976 39469187 -102802257 - MER20 DNA MER1_type 0 219 1 227 233 12 58 chr9 39469197 39469283 -102802161 + MIR SINE MIR 91 172 -90 427 252 9 9 chr9 39469917 39470028 -102801416 - MIR SINE MIR -6 256 146 1440 90 0 0 chr9 39470030 39470207 -102801237 - AluSg/x SINE Alu -9 303 127 531 258 0 8 chr9 39470207 39470331 -102801113 - MIR SINE MIR -111 151 29 253 267 27 0 chr9 39470337 39470412 -102801032 - MIR SINE MIR -133 129 53 330 267 23 0 chr9 39470932 39471018 -102800426 - MLT1C LTR MaLR 0 467 380 1869 117 94 0 chr9 39471598 39471863 -102799581 + AluSx SINE Alu 11 300 -12 4649 82 29 29 chr9 39472003 39472625 -102798819 + PABL_A LTR ERV1 1 625 -35 2396 93 3 3 chr9 39472625 39472936 -102798508 + AluSq SINE Alu 1 311 -2 4649 82 29 29 chr9 39472936 39472973 -102798471 + PABL_A LTR ERV1 624 660 0 324 0 0 0 chr9 39473003 39473039 -102798405 + (CA)n Simple_repeat Simple_repeat 2 37 0 2344 86 3 7 chr9 39473474 39473776 -102797668 - AluSp SINE Alu -12 301 1 2046 98 70 3 chr9 39473847 39474132 -102797312 - AluSq SINE Alu -9 304 1 2468 76 0 0 chr9 39474376 39474667 -102796777 - AluSc SINE Alu -18 291 1 2265 115 0 10 chr9 39474801 39475114 -102796330 - AluSg SINE Alu 0 310 1 2386 96 0 0 chr9 39475793 39476094 -102795350 - AluSx SINE Alu -11 301 1 198 0 0 0 chr9 39476592 39476614 -102794830 + (ATTG)n Simple_repeat Simple_repeat 3 24 0 1861 153 0 21 chr9 39476615 39476903 -102794541 - AluSx SINE Alu -30 282 1 2146 110 0 23 chr9 39476910 39477211 -102794233 - AluSx SINE Alu -9 303 10 2132 123 0 26 chr9 39477213 39477515 -102793929 - AluSx SINE Alu -18 294 1 22 0 0 0 chr9 39477522 39477544 -102793900 + AT_rich Low_complexity Low_complexity 1 22 0 850 216 6 6 chr9 39477544 39477706 -102793738 - AluJ SINE Alu -31 281 120 896 147 0 0 chr9 39477782 39477911 -102793533 - AluJ SINE Alu -183 129 1 1078 179 16 0 chr9 39478005 39478189 -102793255 - MER5A DNA MER1_type 0 189 3 311 181 291 16 chr9 39479292 39479419 -102792025 - MER5B DNA MER1_type 0 178 17 268 298 32 0 chr9 39479436 39479530 -102791914 + MIR SINE MIR 88 184 -78 5234 161 85 61 chr9 39479531 39480378 -102791066 - Charlie1a DNA MER1_type -1306 1455 630 2028 112 24 7 chr9 39480378 39480665 -102790779 + AluSx SINE Alu 1 292 -20 1662 100 5 0 chr9 39480667 39480877 -102790567 + AluSg SINE Alu 1 211 -99 5234 161 85 61 chr9 39480877 39481217 -102790227 - Charlie1a DNA MER1_type -2131 630 133 2122 135 0 0 chr9 39481217 39481513 -102789931 - AluSq SINE Alu -17 296 1 5234 161 85 61 chr9 39481513 39481647 -102789797 - Charlie1a DNA MER1_type -2628 133 4 2202 104 28 0 chr9 39481748 39482036 -102789408 - AluSg SINE Alu -14 296 1 563 214 134 37 chr9 39482114 39482171 -102789273 - MLT1H LTR MaLR -8 541 491 2396 72 7 13 chr9 39482171 39482477 -102788967 + AluSp SINE Alu 1 304 -9 563 214 134 37 chr9 39482477 39482606 -102788838 - MLT1H LTR MaLR -58 491 343 507 108 0 0 chr9 39482678 39482771 -102788673 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 2149 94 24 0 chr9 39482774 39483072 -102788372 - AluY SINE Alu -6 305 1 1250 168 74 4 chr9 39483268 39483524 -102787920 - Charlie1 DNA MER1_type -205 2556 2283 2249 109 3 0 chr9 39484223 39484525 -102786919 - AluSp SINE Alu -10 303 1 756 187 11 53 chr9 39484663 39484850 -102786594 - MIR SINE MIR -35 227 49 748 187 8 8 chr9 39486091 39486225 -102785219 - MLT1A2 LTR MaLR -2 363 230 970 153 43 139 chr9 39486242 39486375 -102785069 - MLT1A2 LTR MaLR -98 276 183 1700 181 0 20 chr9 39486375 39486679 -102784765 - AluJo SINE Alu -2 310 13 970 153 43 139 chr9 39486679 39486826 -102784618 - MLT1A2 LTR MaLR -191 183 23 371 319 101 44 chr9 39486868 39487166 -102784278 + L3 LINE CR1 982 1296 -281 275 310 60 17 chr9 39487260 39487376 -102784068 - MIR SINE MIR -58 150 30 2369 84 3 0 chr9 39487544 39487841 -102783603 - AluSp SINE Alu -15 298 1 2321 121 0 0 chr9 39488353 39488660 -102782784 - AluSx SINE Alu -4 308 2 2459 88 0 0 chr9 39489033 39489338 -102782106 + AluSq SINE Alu 1 305 -8 2596 69 0 0 chr9 39489585 39489890 -102781554 + AluY SINE Alu 1 305 -6 297 0 0 0 chr9 39490141 39490174 -102781270 + (TG)n Simple_repeat Simple_repeat 2 34 0 473 230 43 91 chr9 39490660 39490847 -102780597 - L1MC5 LINE L1 -46 7915 7738 2356 69 31 0 chr9 39490908 39491197 -102780247 + AluSc SINE Alu 1 298 -11 652 254 35 6 chr9 39491544 39491717 -102779727 - MER5B DNA MER1_type 0 178 1 440 192 40 0 chr9 39491734 39491833 -102779611 + MER5A DNA MER1_type 10 112 -77 1284 153 5 19 chr9 39491891 39492107 -102779337 + MER20 DNA MER1_type 6 218 -1 2117 127 3 10 chr9 39493399 39493713 -102777731 - AluSx SINE Alu 0 312 1 2336 243 152 110 chr9 39494030 39495126 -102776318 + HAL1 LINE L1 2 1051 -1456 2154 78 0 4 chr9 39495126 39495397 -102776047 + AluY SINE Alu 1 270 -41 2108 130 0 10 chr9 39495405 39495704 -102775740 + AluSx SINE Alu 1 296 -16 2336 243 152 110 chr9 39495704 39495727 -102775717 + HAL1 LINE L1 1057 1078 -1429 703 175 18 0 chr9 39495727 39495841 -102775603 + FLAM_C SINE Alu 2 117 -26 184 30 61 0 chr9 39495841 39495874 -102775570 + (TTTAA)n Simple_repeat Simple_repeat 2 36 0 2462 69 0 0 chr9 39495874 39496164 -102775280 - AluY SINE Alu -21 290 1 2336 243 152 110 chr9 39496164 39496948 -102774496 + HAL1 LINE L1 1077 2115 -392 869 244 69 47 chr9 39497210 39497574 -102773870 + HAL1 LINE L1 2108 2479 -28 1809 178 0 0 chr9 39497964 39498268 -102773176 - AluSx SINE Alu -8 304 1 273 245 42 14 chr9 39498281 39498496 -102772948 + CT-rich Low_complexity Low_complexity 1 221 0 2140 93 29 0 chr9 39498997 39499277 -102772167 - AluSx SINE Alu -24 288 1 299 262 12 67 chr9 39499283 39499301 -102772143 - L1MA10 LINE L1 0 6334 6317 840 204 43 43 chr9 39499301 39499512 -102771932 - L1ME1 LINE L1 -7 6159 5949 3558 173 73 126 chr9 39499523 39500087 -102771357 - L1M4 LINE L1 -4879 1663 1071 2008 108 3 21 chr9 39500087 39500264 -102771180 - AluSx SINE Alu 0 308 137 2606 68 0 0 chr9 39500264 39500575 -102770869 - AluY SINE Alu 0 311 1 2008 108 3 21 chr9 39500575 39500710 -102770734 - AluSx SINE Alu -171 137 1 3558 173 73 126 chr9 39500710 39500889 -102770555 - L1M4 LINE L1 -5471 1071 884 427 212 12 0 chr9 39500889 39500974 -102770470 + MER7A DNA MER2_type 22 105 -241 3558 173 73 126 chr9 39500974 39501184 -102770260 - L1M4 LINE L1 -5658 884 700 2359 107 3 0 chr9 39501184 39501493 -102769951 - AluSq SINE Alu -3 310 1 3558 173 73 126 chr9 39501493 39501714 -102769730 - L1M4 LINE L1 -5842 700 469 2082 126 0 13 chr9 39501715 39502016 -102769428 - AluJo SINE Alu -15 297 1 1643 113 4 0 chr9 39502220 39502450 -102768994 + AluSp SINE Alu 82 312 -1 997 234 75 50 chr9 39502462 39502744 -102768700 - L1M4 LINE L1 -6157 385 97 405 267 100 28 chr9 39502741 39502992 -102768452 + L1M4 LINE L1 4497 4765 -1381 * 2586 71 0 3 chr9 39503084 39503395 -102768049 + AluY SINE Alu 1 310 -1 2325 97 0 3 chr9 39503673 39503973 -102767471 - AluSx SINE Alu -13 299 1 436 262 78 0 chr9 39504137 39504278 -102767166 - HAL1 LINE L1 -953 1554 1403 1588 259 107 81 chr9 39504407 39504497 -102766947 - L1MEd LINE L1 -4874 1245 1159 2276 119 3 0 chr9 39504497 39504809 -102766635 - AluSq SINE Alu 0 313 1 1588 259 107 81 chr9 39504809 39504827 -102766617 - L1MEd LINE L1 -4960 1159 1143 2437 170 38 31 chr9 39504827 39505350 -102766094 - L1PB4 LINE L1 -6 6150 5624 1588 259 107 81 chr9 39505350 39506389 -102765055 - L1MEd LINE L1 -4976 1143 67 621 214 8 8 chr9 39507237 39507368 -102764076 - MIR3 SINE MIR 0 208 78 376 331 76 17 chr9 39507577 39507749 -102763695 - L3 LINE CR1 -354 1223 1042 207 222 19 37 chr9 39508133 39508187 -102763257 - L3 LINE CR1 -1091 486 434 492 32 0 0 chr9 39508273 39508335 -102763109 + (TG)n Simple_repeat Simple_repeat 1 62 0 2331 118 0 0 chr9 39508858 39509164 -102762280 + AluSx SINE Alu 1 306 -6 1918 170 3 0 chr9 39510068 39510368 -102761076 + AluJo SINE Alu 1 301 -11 236 297 51 8 chr9 39510620 39510738 -102760706 + L1ME4a LINE L1 5929 6051 -70 2479 88 0 0 chr9 39510759 39511064 -102760380 - AluSg SINE Alu -5 305 1 849 309 23 15 chr9 39511620 39512111 -102759333 - LTR67 LTR ERVL 0 557 19 184 313 50 25 chr9 39512752 39512832 -102758612 - L2 LINE L2 -19 3294 3213 301 256 86 34 chr9 39513812 39513929 -102757515 - MIR SINE MIR -80 182 60 186 43 0 0 chr9 39514676 39514699 -102756745 + (TG)n Simple_repeat Simple_repeat 2 24 0 315 289 10 0 chr9 39515192 39515296 -102756148 + MIR SINE MIR 32 136 -126 375 274 39 33 chr9 39516317 39516470 -102754974 + MIR SINE MIR 2 155 -107 613 215 178 23 chr9 39516480 39516699 -102754745 - MIR SINE MIR -2 260 8 355 204 0 61 chr9 39516718 39516816 -102754628 + MIR SINE MIR 146 237 -25 360 255 143 43 chr9 39517091 39517252 -102754192 - MIR SINE MIR -69 193 17 659 300 21 0 chr9 39517402 39517592 -102753852 - MIR SINE MIR -15 247 54 378 261 16 64 chr9 39519206 39519394 -102752050 - L1MC4a LINE L1 -1867 5941 5763 411 274 37 30 chr9 39519616 39519751 -102751693 + MIR SINE MIR 127 262 0 306 197 0 14 chr9 39520894 39520965 -102750479 - LTR37B LTR ERV1 0 468 399 2295 107 0 0 chr9 39520970 39521270 -102750174 - AluSx SINE Alu -12 300 1 357 225 31 101 chr9 39521496 39521625 -102749819 - MIR3 SINE MIR -8 200 81 721 203 31 129 chr9 39522530 39522786 -102748658 + MIR SINE MIR 32 262 0 477 213 95 22 chr9 39522785 39522936 -102748508 + MIR SINE MIR 69 227 -35 * 485 179 28 19 chr9 39522962 39523068 -102748376 - MLT1G LTR MaLR -472 118 12 357 264 14 50 chr9 39523105 39523245 -102748199 - MIR SINE MIR -57 151 17 3932 214 42 18 chr9 39523514 39524746 -102746698 - L1MB8 LINE L1 -187 5991 4881 443 273 36 0 chr9 39524999 39525109 -102746335 + MIR SINE MIR 34 147 -61 268 219 111 11 chr9 39525879 39526013 -102745431 - MLT1I LTR MaLR -14 535 278 282 161 12 161 chr9 39526102 39526183 -102745261 - MLT1I LTR MaLR -274 135 82 794 256 97 0 chr9 39526466 39526693 -102744751 + MIR SINE MIR 13 261 -1 586 250 76 0 chr9 39526686 39526830 -102744614 - MIR SINE MIR -107 155 1 * 855 284 44 25 chr9 39527458 39527820 -102743624 - L1MB8 LINE L1 -1973 4173 3805 358 19 19 19 chr9 39527921 39527973 -102743471 + (TG)n Simple_repeat Simple_repeat 1 52 0 2247 110 0 7 chr9 39528198 39528507 -102742937 - AluSx SINE Alu -5 307 1 25 0 0 0 chr9 39528513 39528538 -102742906 + AT_rich Low_complexity Low_complexity 1 25 0 2216 107 0 10 chr9 39528810 39529120 -102742324 - AluSq SINE Alu -4 309 3 2199 99 0 7 chr9 39529571 39529864 -102741580 - AluSg SINE Alu -19 291 1 369 282 126 34 chr9 39530958 39531112 -102740332 - MIR3 SINE MIR -68 140 5 321 294 0 34 chr9 39531453 39531572 -102739872 + L1MC4 LINE L1 7786 7900 -142 222 227 0 0 chr9 39531606 39531681 -102739763 + (TA)n Simple_repeat Simple_repeat 1 75 0 457 196 98 0 chr9 39531681 39531793 -102739651 + L1MC4 LINE L1 7903 8025 -17 449 248 127 31 chr9 39533605 39533749 -102737695 + MIR3 SINE MIR 5 163 -66 180 0 0 0 chr9 39534465 39534485 -102736959 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1849 153 25 3 chr9 39534493 39534775 -102736669 - AluJo SINE Alu -24 288 1 299 193 36 36 chr9 39534775 39534858 -102736586 - L1MA10 LINE L1 -42 6292 6210 329 185 174 0 chr9 39535191 39535283 -102736161 + L2 LINE L2 3205 3312 -1 2041 136 10 3 chr9 39536056 39536351 -102735093 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr9 39536583 39536613 -102734831 + AT_rich Low_complexity Low_complexity 1 30 0 195 194 0 0 chr9 39539224 39539260 -102732184 - L2 LINE L2 0 3313 3278 183 323 132 64 chr9 39539342 39539446 -102731998 - L2 LINE L2 -198 3074 2978 1955 157 3 3 chr9 39539446 39539758 -102731686 - AluJo SINE Alu 0 312 1 183 323 132 64 chr9 39539758 39539904 -102731540 - L2 LINE L2 -294 2978 2807 4578 150 58 35 chr9 39539962 39540066 -102731378 - L1MB7 LINE L1 0 6184 6084 2144 135 0 3 chr9 39540066 39540370 -102731074 + AluSx SINE Alu 1 303 -9 4578 150 58 35 chr9 39540370 39541300 -102730144 - L1MB7 LINE L1 -100 6084 5127 225 57 38 113 chr9 39541427 39541480 -102729964 - L1MC/D LINE L1 -2587 5455 5407 2039 209 54 63 chr9 39541641 39542145 -102729299 - L1ME1 LINE L1 -5 6230 5730 2648 42 0 3 chr9 39542145 39542451 -102728993 - AluY SINE Alu -6 305 1 2039 209 54 63 chr9 39542451 39542536 -102728908 - L1ME1 LINE L1 -505 5730 5646 2202 119 0 3 chr9 39542559 39542869 -102728575 - AluSx SINE Alu -3 309 1 1997 232 48 9 chr9 39542969 39543516 -102727928 - L1ME1 LINE L1 -1742 4473 3906 337 326 100 3 chr9 39543504 39543814 -102727630 - L1ME1 LINE L1 -4130 2266 1927 * 1270 249 82 50 chr9 39543866 39544606 -102726838 - L1ME1 LINE L1 -4576 1820 1057 589 247 49 37 chr9 39544682 39544844 -102726600 - FAM SINE Alu -21 164 1 253 253 103 66 chr9 39544852 39545125 -102726319 - L1ME1 LINE L1 -5329 1067 785 4381 82 26 0 chr9 39545658 39546232 -102725212 - L1PB2 LINE L1 -2 6149 5561 295 221 0 133 chr9 39546295 39546408 -102725036 + MER112 DNA MER1_type 150 247 -13 563 377 9 16 chr9 39546447 39546763 -102724681 - L2 LINE L2 -788 2526 2213 2281 83 22 26 chr9 39546899 39547211 -102724233 - AluSx SINE Alu -1 311 1 247 257 178 30 chr9 39547513 39547614 -102723830 + L3 LINE CR1 1184 1299 -278 289 68 164 96 chr9 39547621 39547694 -102723750 - MLT2A1 LTR ERVL 0 453 367 27 81 0 0 chr9 39547695 39547757 -102723687 + AT_rich Low_complexity Low_complexity 1 62 0 2973 75 0 8 chr9 39547771 39548158 -102723286 - MLT2A1 LTR ERVL -60 384 1 241 313 62 52 chr9 39548185 39548281 -102723163 + L2 LINE L2 3168 3264 -8 353 348 96 27 chr9 39548305 39548492 -102722952 + L3 LINE CR1 1374 1573 -4 612 205 63 153 chr9 39548579 39548630 -102722814 - MIR SINE MIR -12 250 196 940 189 107 19 chr9 39548630 39548836 -102722608 + MER58A DNA MER1_type 1 224 0 612 205 63 153 chr9 39548836 39549038 -102722406 - MIR SINE MIR -66 196 20 256 258 52 129 chr9 39549749 39549904 -102721540 + MIR3 SINE MIR 2 144 -64 220 361 115 16 chr9 39551442 39551564 -102719880 + MIR3 SINE MIR 5 138 -70 6912 166 50 26 chr9 39551702 39552680 -102718764 + L1MC3 LINE L1 3824 4776 -1370 1685 228 26 91 chr9 39552680 39553220 -102718224 - MLT1D LTR MaLR 0 505 1 6912 166 50 26 chr9 39553220 39553833 -102717611 + L1MC3 LINE L1 4776 5372 -774 213 39 0 0 chr9 39553833 39553859 -102717585 + (CA)n Simple_repeat Simple_repeat 2 27 0 6912 166 50 26 chr9 39553859 39554350 -102717094 + L1MC3 LINE L1 5372 5283 -863 2284 129 0 0 chr9 39554350 39554661 -102716783 + AluSx SINE Alu 1 311 -1 6912 166 50 26 chr9 39554661 39554787 -102716657 + L1MC3 LINE L1 5282 5403 -743 717 160 0 0 chr9 39554828 39554934 -102716510 - AluSq/x SINE Alu -205 107 2 700 154 0 20 chr9 39554934 39555083 -102716361 + CT-rich Low_complexity Low_complexity 3 148 0 240 35 0 0 chr9 39555159 39555188 -102716256 + (TCC)n Simple_repeat Simple_repeat 2 30 0 757 200 0 0 chr9 39555189 39555304 -102716140 - FLAM_A SINE Alu -18 115 1 487 48 0 0 chr9 39555856 39555918 -102715526 + L1PA13 LINE L1 6099 6160 -3 2176 111 24 0 chr9 39556206 39556504 -102714940 + AluSq SINE Alu 1 305 -8 1896 150 3 7 chr9 39556542 39556842 -102714602 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr9 39556979 39557003 -102714441 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr9 39557777 39557811 -102713633 + (CA)n Simple_repeat Simple_repeat 2 35 0 619 328 61 16 chr9 39557833 39558260 -102713184 + L3 LINE CR1 1131 1576 -1 2136 101 78 31 chr9 39558950 39559308 -102712136 - THE1C LTR MaLR 0 375 1 10775 110 7 56 chr9 39559308 39560967 -102710477 - THE1C-int LTR MaLR 0 1580 3 1959 139 75 33 chr9 39560969 39561329 -102710115 - THE1C LTR MaLR 0 375 1 455 297 181 31 chr9 39561477 39561903 -102709541 + L2 LINE L2 1889 2418 -896 628 231 15 8 chr9 39561903 39562033 -102709411 - MER94 DNA DNA -1 133 3 455 297 181 31 chr9 39562033 39562158 -102709286 + L2 LINE L2 2418 2523 -791 340 246 98 16 chr9 39562134 39562256 -102709188 + L2 LINE L2 3136 3267 -5 * 417 228 165 32 chr9 39562287 39562445 -102708999 - MIR3 SINE MIR -7 201 23 354 98 0 0 chr9 39562514 39562565 -102708879 + (TG)n Simple_repeat Simple_repeat 2 52 0 1991 141 3 41 chr9 39562678 39562997 -102708447 - AluJo SINE Alu -5 307 1 188 330 55 28 chr9 39563313 39563422 -102708022 + MIR3 SINE MIR 87 198 -10 1346 142 83 0 chr9 39563471 39563689 -102707755 + MER46A DNA MER2_type 1 236 0 351 78 0 0 chr9 39564648 39564699 -102706745 + (TG)n Simple_repeat Simple_repeat 1 51 0 578 238 93 7 chr9 39565009 39565160 -102706284 - MER5B DNA MER1_type 0 178 15 2268 100 0 0 chr9 39565765 39566056 -102705388 - AluSg SINE Alu -19 291 1 3769 152 2 5 chr9 39566065 39566637 -102704807 - L1PA16 LINE L1 -16 6150 5581 371 301 87 33 chr9 39566892 39567075 -102704369 - MLT1L LTR MaLR -114 501 309 2292 126 32 59 chr9 39567080 39567289 -102704155 - THE1B LTR MaLR 0 364 168 2095 107 35 3 chr9 39567289 39567578 -102703866 + AluSq SINE Alu 1 298 -15 2292 126 32 59 chr9 39567578 39567742 -102703702 - THE1B LTR MaLR -196 168 1 181 321 0 0 chr9 39567954 39568010 -102703434 + MIR SINE MIR 56 111 -151 445 272 0 0 chr9 39568103 39568217 -102703227 - MER103 DNA DNA -51 115 2 614 240 45 4 chr9 39568482 39568695 -102702749 + L2 LINE L2 3090 3310 -3 201 39 0 0 chr9 39569008 39569034 -102702410 + (GA)n Simple_repeat Simple_repeat 2 27 0 2053 121 3 7 chr9 39569179 39569461 -102701983 + AluSq SINE Alu 2 308 0 235 0 0 0 chr9 39569461 39569487 -102701957 + (CAAAA)n Simple_repeat Simple_repeat 1 105 0 195 259 56 83 chr9 39570367 39570475 -102700969 - MIR SINE MIR -66 196 92 2403 111 0 0 chr9 39570603 39570909 -102700535 + AluSx SINE Alu 1 306 -6 321 310 47 23 chr9 39570920 39571091 -102700353 - MER5B DNA MER1_type -3 175 1 281 274 26 71 chr9 39571137 39571250 -102700194 + MIR3 SINE MIR 88 195 -13 566 265 121 56 chr9 39571346 39571595 -102699849 + MLT1L LTR MaLR 5 269 -346 291 212 71 0 chr9 39571750 39571835 -102699609 - MLT1I LTR MaLR -3 406 316 1497 159 63 61 chr9 39571881 39572259 -102699185 + MLT1B LTR MaLR 11 389 -1 638 264 112 25 chr9 39572259 39572532 -102698912 - MLT1J2 LTR MaLR -137 313 17 301 352 22 6 chr9 39572537 39572716 -102698728 + MLT1L LTR MaLR 434 615 0 188 234 85 0 chr9 39573010 39573057 -102698387 + L2 LINE L2 3262 3312 -1 2191 115 3 16 chr9 39573126 39573438 -102698006 - AluSx SINE Alu -4 308 1 204 308 87 83 chr9 39573439 39573874 -102697570 + L2 LINE L2 2835 3271 -1 3802 164 6 3 chr9 39573999 39574639 -102696805 - L1MB4 LINE L1 0 6180 5539 291 227 93 0 chr9 39576051 39576126 -102695318 - L2 LINE L2 -52 3261 3180 388 250 46 0 chr9 39576163 39576271 -102695173 - MER20B DNA MER1_type -157 626 514 310 252 149 0 chr9 39576385 39576492 -102694952 - MER20B DNA MER1_type -267 516 394 210 71 0 0 chr9 39576522 39576550 -102694894 + (A)n Simple_repeat Simple_repeat 1 28 0 666 215 15 0 chr9 39576554 39576684 -102694760 + FLAM_A SINE Alu 1 132 -1 455 276 83 21 chr9 39577044 39577189 -102694255 + MIR3 SINE MIR 30 183 -25 337 272 70 40 chr9 39577253 39577551 -102693893 + L1ME4a LINE L1 5711 6017 -104 2070 149 18 37 chr9 39577837 39578219 -102693225 - THE1C LTR MaLR 0 375 1 521 316 48 0 chr9 39578309 39578477 -102692967 - MIR SINE MIR -74 188 13 27 0 0 0 chr9 39579602 39579629 -102691815 + AT_rich Low_complexity Low_complexity 1 27 0 192 289 0 0 chr9 39579759 39579804 -102691640 - L2 LINE L2 -17 3296 3252 274 225 25 62 chr9 39579882 39579962 -102691482 - MIR3 SINE MIR -50 158 82 2418 182 80 2 chr9 39580210 39580786 -102690658 - Charlie2 DNA MER1_type -11 2851 2231 483 232 71 0 chr9 39580796 39580908 -102690536 - MER91C DNA MER1_type -6 134 15 714 252 54 57 chr9 39580912 39581245 -102690199 - Charlie2 DNA MER1_type -2483 379 48 655 184 95 17 chr9 39581504 39581683 -102689761 - MIR SINE MIR -34 228 36 2386 104 0 0 chr9 39581746 39582053 -102689391 + AluSc SINE Alu 1 307 -2 329 270 88 15 chr9 39582077 39582137 -102689307 - MIR SINE MIR -13 249 195 1945 133 0 14 chr9 39582137 39582273 -102689171 + AluSx SINE Alu 1 137 -176 2461 99 0 0 chr9 39582273 39582577 -102688867 + AluSx SINE Alu 1 304 -8 1945 133 0 14 chr9 39582577 39582757 -102688687 + AluSx SINE Alu 137 313 0 329 270 88 15 chr9 39582757 39582832 -102688612 - MIR SINE MIR -67 195 103 248 306 31 10 chr9 39583075 39583173 -102688271 - L2 LINE L2 -5 3267 3168 474 286 32 0 chr9 39583614 39583740 -102687704 + MIR3 SINE MIR 71 200 -8 396 318 65 12 chr9 39584599 39584769 -102686675 + MIR SINE MIR 7 185 -77 353 190 13 25 chr9 39584781 39584860 -102686584 - L2 LINE L2 -7 3306 3229 404 263 230 0 chr9 39585387 39585539 -102685905 - MER5A DNA MER1_type -2 187 1 545 162 121 0 chr9 39586088 39586187 -102685257 - MER81 DNA DNA -3 111 1 481 291 82 19 chr9 39586237 39586443 -102685001 + MIR SINE MIR 13 231 -31 651 206 23 34 chr9 39586489 39586664 -102684780 - MER104 DNA Tc2 -1 179 7 212 360 11 34 chr9 39586664 39586753 -102684691 - L2 LINE L2 -42 3230 3144 255 228 117 28 chr9 39587881 39588026 -102683418 - L1ME4a LINE L1 -1 6120 5963 461 178 22 0 chr9 39588030 39588120 -102683324 - Zaphod DNA AcHobo 0 4031 3940 * 2792 233 82 27 chr9 39588098 39588947 -102682497 - Zaphod DNA AcHobo -3126 905 10 303 140 0 0 chr9 39588954 39589004 -102682440 + (TG)n Simple_repeat Simple_repeat 2 51 0 40 0 0 0 chr9 39589017 39589057 -102682387 + AT_rich Low_complexity Low_complexity 1 40 0 335 266 32 85 chr9 39589219 39589282 -102682162 - L1ME4a LINE L1 -280 5841 5776 2159 124 3 3 chr9 39589282 39589581 -102681863 - AluSx SINE Alu -13 299 1 335 266 32 85 chr9 39589581 39589705 -102681739 - L1ME4a LINE L1 -345 5776 5664 280 242 27 3 chr9 39589899 39589994 -102681450 + MIR SINE MIR 74 170 -62 256 270 27 14 chr9 39590367 39590441 -102681003 - L2 LINE L2 0 3272 3198 1134 229 174 10 chr9 39590622 39591019 -102680425 + MLT1C LTR MaLR 6 467 0 240 59 0 0 chr9 39591071 39591105 -102680339 + (TG)n Simple_repeat Simple_repeat 2 35 0 363 242 24 81 chr9 39591114 39591238 -102680206 + MIR3 SINE MIR 42 158 -50 1344 243 99 34 chr9 39591658 39592124 -102679320 - MLT1D LTR MaLR 0 505 10 494 264 36 48 chr9 39592499 39592602 -102678842 - MIR SINE MIR -72 190 88 3100 90 9 29 chr9 39592602 39593003 -102678441 - MER57B LTR ERV1 0 434 41 2370 116 0 3 chr9 39593003 39593314 -102678130 + AluSx SINE Alu 1 310 -2 3100 90 9 29 chr9 39593314 39593355 -102678089 - MER57B LTR ERV1 -393 41 1 494 264 36 48 chr9 39593355 39593418 -102678026 - MIR SINE MIR -174 88 26 244 216 189 18 chr9 39593473 39593584 -102677860 + MIR SINE MIR 23 152 -56 348 277 96 31 chr9 39594340 39594600 -102676844 - L1ME4a LINE L1 -204 5917 5641 21 0 0 0 chr9 39594600 39594621 -102676823 + AT_rich Low_complexity Low_complexity 1 21 0 1225 139 77 39 chr9 39594638 39594846 -102676598 + AluSg SINE Alu 5 220 -90 1367 167 8 33 chr9 39594948 39595193 -102676251 - AluJo SINE Alu -52 260 22 493 234 132 38 chr9 39595219 39595454 -102675990 - L1ME4a LINE L1 -487 5634 5378 323 353 13 20 chr9 39595559 39595709 -102675735 - MIR3 SINE MIR -59 149 1 302 365 28 14 chr9 39596162 39596307 -102675137 + MIR3 SINE MIR 33 179 -29 2212 122 0 3 chr9 39596507 39596810 -102674634 - AluSg SINE Alu -8 302 1 2175 139 3 0 chr9 39596810 39597113 -102674331 - AluSx SINE Alu -8 304 1 198 71 0 0 chr9 39597769 39597797 -102673647 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 280 309 40 0 chr9 39598434 39598560 -102672884 - L1ME4a LINE L1 -5 6116 5986 228 261 115 13 chr9 39598624 39598781 -102672663 - L1ME4a LINE L1 -238 5883 5711 826 165 0 0 chr9 39598788 39598909 -102672535 - AluJb SINE Alu -191 121 1 1601 153 83 63 chr9 39598909 39599210 -102672234 - AluJb SINE Alu -5 307 1 376 266 6 108 chr9 39599215 39599237 -102672207 - L1ME4a LINE L1 -383 5738 5715 326 241 13 0 chr9 39599237 39599316 -102672128 + MER116 DNA Mariner 1 80 0 376 266 6 108 chr9 39599316 39599451 -102671993 - L1ME4a LINE L1 -406 5715 5597 236 281 78 102 chr9 39601713 39601880 -102669564 + L2 LINE L2 3107 3269 -3 258 32 0 0 chr9 39602175 39602206 -102669238 + (CA)n Simple_repeat Simple_repeat 2 32 0 273 305 169 23 chr9 39602429 39602606 -102668838 - L3 LINE CR1 -1258 319 117 306 243 21 86 chr9 39602734 39602874 -102668570 + MIR SINE MIR 92 222 -40 248 309 71 12 chr9 39602935 39603019 -102668425 - L2 LINE L2 -51 3221 3133 182 213 21 21 chr9 39604353 39604400 -102667044 + L2 LINE L2 3226 3272 0 313 291 42 98 chr9 39604516 39604801 -102666643 - L3 LINE CR1 -8 1569 1301 232 322 11 11 chr9 39605888 39605978 -102665466 - L2 LINE L2 -24 3248 3159 260 250 15 15 chr9 39606202 39606270 -102665174 - L2 LINE L2 -1 3271 3204 2169 99 3 7 chr9 39606611 39606903 -102664541 - AluSc SINE Alu -18 291 1 275 253 52 96 chr9 39606915 39607144 -102664300 - L2 LINE L2 -40 3232 3014 393 178 29 5 chr9 39607552 39607646 -102663798 + MIR SINE MIR 71 166 -42 884 242 5 5 chr9 39608305 39608491 -102662953 + MIR SINE MIR 20 205 -57 462 239 65 107 chr9 39608603 39608786 -102662658 + MLT1K LTR MaLR 217 377 -211 2285 129 0 0 chr9 39608786 39609096 -102662348 + AluSx SINE Alu 1 310 -2 462 239 65 107 chr9 39609096 39609297 -102662147 + MLT1K LTR MaLR 377 585 -3 188 293 0 0 chr9 39609306 39609347 -102662097 + L2 LINE L2 3214 3254 -18 244 184 41 0 chr9 39610292 39610341 -102661103 - MIR SINE MIR -110 152 102 189 241 17 35 chr9 39611159 39611217 -102660227 - MIR SINE MIR -98 164 108 515 271 8 0 chr9 39611665 39611787 -102659657 + MIR SINE MIR 31 153 -109 462 254 34 0 chr9 39611787 39611905 -102659539 + MER94 DNA DNA 1 122 -12 232 161 81 0 chr9 39611914 39611976 -102659468 + MIR SINE MIR 141 207 -55 4508 135 25 73 chr9 39613793 39614660 -102656784 + L1MC1 LINE L1 5508 6333 0 344 304 61 9 chr9 39614700 39614914 -102656530 - L1ME4a LINE L1 -253 5868 5644 563 219 0 42 chr9 39615259 39615378 -102656066 - MER81 DNA DNA 0 114 1 433 343 109 34 chr9 39615786 39616030 -102655414 + MIR SINE MIR 2 262 0 478 268 84 103 chr9 39616137 39616563 -102654881 + L2 LINE L2 2844 3261 -11 207 325 73 39 chr9 39616570 39616804 -102654640 - L2 LINE L2 -160 3112 2871 808 141 41 18 chr9 39616956 39617126 -102654318 - MER53 DNA DNA -15 174 1 334 250 78 61 chr9 39617866 39618002 -102653442 - MIR SINE MIR -63 145 9 355 214 79 0 chr9 39618531 39618620 -102652824 - MLT1J1 LTR MaLR -1 445 350 356 136 30 0 chr9 39618646 39618712 -102652732 - MER53 DNA DNA 0 189 122 336 262 0 0 chr9 39618802 39618886 -102652558 - MER53 DNA DNA -105 84 1 708 226 81 39 chr9 39618893 39619176 -102652268 - MLT1J2 LTR MaLR -118 332 38 387 0 0 0 chr9 39619188 39619231 -102652213 + (CA)n Simple_repeat Simple_repeat 2 44 0 1487 209 48 18 chr9 39619495 39619825 -102651619 + MLT1A1 LTR MaLR 26 365 0 482 264 168 0 chr9 39619864 39620021 -102651423 + MIR SINE MIR 68 249 -13 740 236 20 35 chr9 39621781 39621980 -102649464 - MIR SINE MIR -16 246 51 195 310 100 0 chr9 39622168 39622268 -102649176 - L2 LINE L2 -1 3271 3162 215 227 0 15 chr9 39622387 39622453 -102648991 - L2 LINE L2 -293 2979 2915 511 301 88 5 chr9 39622974 39623167 -102648277 + MIR SINE MIR 37 245 -17 2429 89 13 0 chr9 39623245 39623548 -102647896 + AluSq SINE Alu 2 308 -5 289 186 68 0 chr9 39624621 39624680 -102646764 - MIR SINE MIR -116 146 84 256 147 58 32 chr9 39624888 39625044 -102646400 + (TG)n Simple_repeat Simple_repeat 2 161 0 528 84 65 29 chr9 39625073 39625497 -102645947 + (TG)n Simple_repeat Simple_repeat 1 439 0 490 61 56 56 chr9 39625523 39625703 -102645741 + (TG)n Simple_repeat Simple_repeat 1 180 0 567 65 77 12 chr9 39625789 39625957 -102645487 + (TG)n Simple_repeat Simple_repeat 1 179 0 404 44 56 22 chr9 39626080 39626170 -102645274 + (TG)n Simple_repeat Simple_repeat 1 93 0 554 295 111 9 chr9 39626755 39626972 -102644472 + L2 LINE L2 3074 3312 -1 295 187 67 13 chr9 39627149 39627224 -102644220 + L2 LINE L2 3194 3272 0 2260 64 36 0 chr9 39627716 39627996 -102643448 - AluSq SINE Alu -22 291 2 661 138 8 8 chr9 39628109 39628232 -102643212 + CT-rich Low_complexity Low_complexity 4 126 0 277 225 28 0 chr9 39628242 39628313 -102643131 - MER39 LTR ERV1 -92 615 543 292 301 179 42 chr9 39628485 39628820 -102642624 - L2 LINE L2 -233 3039 2652 239 264 46 75 chr9 39629446 39629620 -102641824 - MER104 DNA Tc2 -1 179 11 993 241 28 0 chr9 39630784 39631033 -102640411 + MIR SINE MIR 3 258 -4 264 355 79 13 chr9 39631050 39631202 -102640242 + MIR SINE MIR 47 208 -54 250 268 158 0 chr9 39632077 39632159 -102639285 - MIR SINE MIR -110 152 58 350 236 49 65 chr9 39632483 39632606 -102638838 + MIR SINE MIR 81 201 -61 202 309 44 20 chr9 39633023 39633188 -102638256 - MIR SINE MIR -62 146 5 377 310 25 35 chr9 39633229 39633432 -102638012 - LTR67 LTR ERVL 0 557 357 535 272 22 11 chr9 39634374 39634554 -102636890 + MIR SINE MIR 66 247 -15 283 267 209 0 chr9 39634770 39634875 -102636569 - MER5B DNA MER1_type 0 178 52 484 143 20 0 chr9 39634876 39634974 -102636470 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 5432 68 0 1 chr9 39635539 39636259 -102635185 - L1PA7 LINE L1 -1 6153 5435 846 218 124 0 chr9 39637630 39637823 -102633621 - MIR SINE MIR -26 236 20 226 326 83 21 chr9 39638115 39638259 -102633185 + L2 LINE L2 2826 2978 -294 337 253 96 14 chr9 39638365 39638511 -102632933 - L1ME4a LINE L1 0 6121 5964 3017 35 0 30 chr9 39638618 39638998 -102632446 - L1PA3 LINE L1 0 6155 5786 2907 13 0 0 chr9 39638998 39639306 -102632138 - AluYb8 SINE Alu -10 308 1 3017 35 0 30 chr9 39639306 39639327 -102632117 - L1PA3 LINE L1 -369 5786 5766 1051 146 0 56 chr9 39639367 39639545 -102631899 - AluJb SINE Alu -14 298 131 308 234 234 29 chr9 39639618 39639755 -102631689 - L1ME4a LINE L1 -267 5854 5690 183 42 0 0 chr9 39639950 39639974 -102631470 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 840 333 34 26 chr9 39640674 39641314 -102630130 - L2 LINE L2 0 3313 2670 1922 161 6 6 chr9 39644772 39645083 -102626361 + AluJb SINE Alu 1 311 -1 856 274 5 0 chr9 39645222 39645430 -102626014 + MIR SINE MIR 43 251 -11 1381 191 98 56 chr9 39645444 39645852 -102625592 - MLT1C LTR MaLR -7 460 36 651 337 132 16 chr9 39645865 39646245 -102625199 - MLT1K LTR MaLR -158 430 7 516 293 57 25 chr9 39646285 39646565 -102624879 + L3 LINE CR1 1245 1533 -44 513 214 209 16 chr9 39646565 39646624 -102624820 + MER112 DNA MER1_type 1 47 -213 279 0 0 0 chr9 39646624 39646655 -102624789 + (CA)n Simple_repeat Simple_repeat 2 32 0 513 214 209 16 chr9 39646655 39646777 -102624667 + MER112 DNA MER1_type 47 217 -43 268 233 17 0 chr9 39646784 39646844 -102624600 + L3 LINE CR1 1516 1576 -1 360 0 0 0 chr9 39647409 39647449 -102623995 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 235 0 0 chr9 39647503 39647554 -102623890 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 1621 219 70 5 chr9 39647572 39647987 -102623457 - L2 LINE L2 0 3313 2872 556 182 9 0 chr9 39647987 39648097 -102623347 - LTR16A LTR ERVL -19 431 321 786 306 5 5 chr9 39648105 39648327 -102623117 - LTR16A LTR ERVL -93 357 136 1194 237 180 7 chr9 39648442 39648859 -102622585 - L2 LINE L2 -511 2803 2315 542 357 80 15 chr9 39649158 39649483 -102621961 - L2 LINE L2 -754 2560 2215 180 271 42 0 chr9 39649762 39649810 -102621634 + L3b LINE CR1 1517 1566 -17 360 258 11 0 chr9 39650800 39650889 -102620555 - MER117 DNA MER1_type -107 90 1 2293 106 3 0 chr9 39651045 39651337 -102620107 - AluSp SINE Alu -20 293 1 2186 145 0 0 chr9 39652346 39652657 -102618787 + AluSx SINE Alu 1 311 -1 1802 159 37 14 chr9 39654048 39654344 -102617100 + AluJb SINE Alu 1 303 -9 389 133 24 0 chr9 39654344 39654427 -102617017 + GA-rich Low_complexity Low_complexity 1 85 0 519 17 0 0 chr9 39654589 39654649 -102616795 + (CA)n Simple_repeat Simple_repeat 1 60 0 796 182 63 0 chr9 39654770 39654929 -102616515 + MER3 DNA MER1_type 1 122 -87 533 267 148 18 chr9 39655420 39655637 -102615807 - MIR SINE MIR -16 246 2 336 260 126 0 chr9 39657425 39657552 -102613892 + MIR SINE MIR 45 187 -75 744 242 82 9 chr9 39657609 39657828 -102613616 + MIR SINE MIR 28 262 0 649 292 84 44 chr9 39658651 39658901 -102612543 - MLT1I LTR MaLR -1 408 149 676 228 42 50 chr9 39659079 39659239 -102612205 - MLT1I LTR MaLR -241 168 18 181 406 10 0 chr9 39659256 39659352 -102612092 + MIR SINE MIR 161 257 -5 214 188 42 0 chr9 39659381 39659429 -102612015 - MIR SINE MIR -123 139 90 501 264 42 0 chr9 39659630 39659774 -102611670 - MIR SINE MIR -77 185 36 203 79 26 0 chr9 39659958 39659996 -102611448 + (GA)n Simple_repeat Simple_repeat 1 39 0 345 200 114 19 chr9 39660196 39660301 -102611143 + MER91B DNA MER1_type 26 140 -50 1165 257 189 0 chr9 39660313 39660725 -102610719 + LTR33 LTR ERVL 25 514 -7 186 133 0 0 chr9 39662379 39662409 -102609035 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 453 220 167 13 chr9 39662545 39662704 -102608740 + MIR SINE MIR 63 244 -18 249 237 124 21 chr9 39664429 39664526 -102606918 - L2 LINE L2 -61 3211 3105 317 82 20 0 chr9 39664583 39664632 -102606812 + (TG)n Simple_repeat Simple_repeat 1 50 0 216 303 101 11 chr9 39665105 39665194 -102606250 + MIR SINE MIR 6 102 -160 819 247 109 39 chr9 39665205 39665488 -102605956 - MLT1I LTR MaLR 0 409 107 327 226 60 0 chr9 39665548 39665632 -102605812 + MIR SINE MIR 116 204 -58 303 193 23 34 chr9 39666288 39666376 -102605068 - MIR SINE MIR -10 252 166 671 253 142 4 chr9 39666510 39666735 -102604709 - MIR SINE MIR -5 257 2 516 313 34 57 chr9 39666761 39667058 -102604386 + L3 LINE CR1 1249 1538 -39 472 286 21 0 chr9 39667960 39668100 -102603344 + MIR3 SINE MIR 32 174 -34 355 226 150 15 chr9 39668914 39669047 -102602397 - MIR SINE MIR 0 262 112 857 150 9 141 chr9 39669196 39669334 -102602110 - MER5A DNA MER1_type -4 185 83 1447 144 15 0 chr9 39669334 39669597 -102601847 - L1MA2 LINE L1 0 6304 6038 857 150 9 141 chr9 39669597 39669671 -102601773 - MER5A DNA MER1_type -106 83 1 694 256 15 20 chr9 39669689 39669884 -102601560 + L2 LINE L2 3118 3311 -2 194 172 0 103 chr9 39669888 39669946 -102601498 - MIR SINE MIR -133 75 24 330 167 0 0 chr9 39670630 39670690 -102600754 + T-rich Low_complexity Low_complexity 1 60 0 647 260 72 27 chr9 39671056 39671279 -102600165 - MIR SINE MIR 0 262 30 260 309 102 21 chr9 39671335 39671477 -102599967 + MIR SINE MIR 31 182 -62 461 346 43 0 chr9 39671546 39671734 -102599710 - L3 LINE CR1 -237 1340 1145 287 258 192 0 chr9 39671709 39671829 -102599615 + MIR SINE MIR 86 228 -34 * 268 206 44 0 chr9 39671936 39672004 -102599440 - L1ME2 LINE L1 -11 6153 6083 3601 232 62 19 chr9 39672017 39673814 -102597630 - L1ME2 LINE L1 -153 6011 4132 554 344 26 33 chr9 39674032 39674305 -102597139 + MLT1I LTR MaLR 7 277 -132 564 260 32 0 chr9 39674451 39674605 -102596839 + MLT1I LTR MaLR 236 394 -15 393 300 72 65 chr9 39675700 39675990 -102595454 - L2 LINE L2 -86 3227 2936 326 301 91 38 chr9 39676059 39676350 -102595094 - L2 LINE L2 -177 3095 2712 749 288 74 54 chr9 39676694 39677100 -102594344 - MLT1K LTR MaLR -15 573 160 37 0 0 0 chr9 39677308 39677345 -102594099 + AT_rich Low_complexity Low_complexity 1 37 0 410 338 0 0 chr9 39677481 39677617 -102593827 + MIR SINE MIR 17 152 -56 271 327 40 13 chr9 39677908 39678058 -102593386 - L3 LINE CR1 -1 1576 1423 191 214 0 0 chr9 39678116 39678158 -102593286 - L2 LINE L2 -301 2971 2930 1409 152 7 82 chr9 39678768 39679071 -102592373 + AluJb SINE Alu 33 312 0 906 138 6 22 chr9 39679077 39679258 -102592186 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 716 177 23 31 chr9 39679888 39680018 -102591426 + FLAM_C SINE Alu 3 131 -12 357 192 51 45 chr9 39680602 39680758 -102590686 + (TCTCTG)n Simple_repeat Simple_repeat 5 161 0 222 279 32 26 chr9 39680691 39680845 -102590599 + CT-rich Low_complexity Low_complexity 6 160 0 * 203 59 0 29 chr9 39680854 39680888 -102590556 + (TC)n Simple_repeat Simple_repeat 1 33 0 230 247 82 0 chr9 39681565 39681650 -102589794 + MIR SINE MIR 56 147 -61 203 262 7 121 chr9 39681996 39682137 -102589307 + L2 LINE L2 2916 3040 -232 1226 240 92 45 chr9 39682441 39682933 -102588511 - LTR33 LTR ERVL -6 515 1 345 24 0 0 chr9 39683874 39683916 -102587528 + (CA)n Simple_repeat Simple_repeat 2 43 0 1102 274 97 32 chr9 39685773 39686248 -102585196 + MLT1J LTR MaLR 6 511 0 2070 118 0 13 chr9 39686537 39686850 -102584594 - AluSg SINE Alu -1 309 1 251 325 114 0 chr9 39686940 39687054 -102584390 - L3 LINE CR1 -36 1541 1415 301 362 8 8 chr9 39687283 39687410 -102584034 + L2 LINE L2 3145 3271 -1 523 299 16 27 chr9 39687703 39687890 -102583554 + MIR SINE MIR 23 207 -55 2013 239 71 2 chr9 39688221 39688685 -102582759 - MLT1E1 LTR MaLR -3 651 156 182 170 0 132 chr9 39689378 39689431 -102582013 + L2 LINE L2 3217 3262 -10 1143 226 50 27 chr9 39689768 39690069 -102581375 + MLT1J2 LTR MaLR 13 320 -130 253 167 21 0 chr9 39690104 39690152 -102581292 - MLT1E1 LTR MaLR -99 555 507 * 391 276 0 9 chr9 39690136 39690241 -102581203 + MLT1J2 LTR MaLR 347 450 0 719 226 0 0 chr9 39690904 39691037 -102580407 - FLAM_A SINE Alu 0 133 1 1942 149 117 3 chr9 39691766 39692116 -102579328 + MLT1B LTR MaLR 1 390 0 469 243 18 59 chr9 39692820 39692989 -102578455 + L2 LINE L2 2898 3059 -213 292 236 45 55 chr9 39693265 39693375 -102578069 - MIR SINE MIR -56 206 98 818 156 2 22 chr9 39694432 39694726 -102576718 + AluJo SINE Alu 5 246 -66 321 258 135 0 chr9 39694729 39694818 -102576626 + L2 LINE L2 3213 3313 0 205 178 0 0 chr9 39695665 39695710 -102575734 + T-rich Low_complexity Low_complexity 1 45 0 258 56 0 0 chr9 39696235 39696271 -102575173 + (TG)n Simple_repeat Simple_repeat 2 37 0 216 308 10 58 chr9 39698138 39698242 -102573202 + MIR3 SINE MIR 61 159 -49 182 295 82 0 chr9 39699037 39699098 -102572346 + MIR SINE MIR 120 185 -77 294 234 153 9 chr9 39700180 39700291 -102571153 + MIR3 SINE MIR 11 137 -71 387 269 0 37 chr9 39700635 39700769 -102570675 - MIR3 SINE MIR -78 130 2 190 239 0 0 chr9 39701486 39701532 -102569912 + MIR3 SINE MIR 147 192 -16 1060 248 0 0 chr9 39702662 39702884 -102568560 + MER58A DNA MER1_type 3 224 0 252 215 177 0 chr9 39703071 39703150 -102568294 - MIR SINE MIR -19 243 151 277 262 18 95 chr9 39703155 39703323 -102568121 + L2 LINE L2 2906 3060 -212 180 77 0 0 chr9 39703546 39703572 -102567872 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 717 161 0 0 chr9 39704824 39704973 -102566471 + (TG)n Simple_repeat Simple_repeat 2 150 0 197 214 0 0 chr9 39705302 39705344 -102566100 - MIR SINE MIR -109 153 112 1098 271 63 48 chr9 39705389 39705932 -102565512 + LTR67 LTR ERVL 7 557 0 767 269 29 29 chr9 39706103 39706348 -102565096 + MIR SINE MIR 6 250 -12 464 303 46 7 chr9 39706768 39706920 -102564524 - MER91A DNA MER1_type -4 192 35 349 223 250 0 chr9 39708189 39708301 -102563143 - MER117 DNA MER1_type -47 150 11 193 156 0 0 chr9 39709048 39709080 -102562364 - MIR SINE MIR -63 145 114 288 0 0 0 chr9 39710168 39710200 -102561244 + (CA)n Simple_repeat Simple_repeat 1 32 0 181 239 22 0 chr9 39710575 39710621 -102560823 + L2 LINE L2 3012 3058 -214 796 210 85 28 chr9 39711082 39711330 -102560114 + L2 LINE L2 3039 3300 -13 186 43 0 0 chr9 39711330 39711353 -102560091 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 215 298 145 32 chr9 39711818 39711942 -102559502 - L2 LINE L2 -214 3058 2921 411 282 32 0 chr9 39712866 39712990 -102558454 + MIR SINE MIR 70 197 -65 544 301 13 13 chr9 39713736 39713950 -102557494 + MIR SINE MIR 5 216 -46 314 306 0 24 chr9 39714105 39714229 -102557215 - MIR3 SINE MIR 0 208 88 189 308 31 0 chr9 39714641 39714706 -102556738 - MIR SINE MIR -112 96 30 386 319 43 57 chr9 39714801 39715011 -102556433 - L1MC4 LINE L1 -7 8035 7829 465 216 8 71 chr9 39715044 39715204 -102556240 - L1ME2 LINE L1 0 6162 6013 273 314 7 29 chr9 39716126 39716266 -102555178 + (CATATA)n Simple_repeat Simple_repeat 4 140 0 399 245 65 79 chr9 39716266 39716405 -102555039 + MIR3 SINE MIR 49 185 -23 246 245 85 11 chr9 39716754 39716848 -102554596 + MIR SINE MIR 39 139 -123 269 163 0 0 chr9 39717148 39717197 -102554247 + Charlie8 DNA MER1_type 1369 1417 -1000 356 268 57 128 chr9 39717573 39717957 -102553487 + L2 LINE L2 2873 3229 -43 1724 111 0 0 chr9 39718346 39718590 -102552854 - AluY SINE Alu -4 307 64 243 269 187 23 chr9 39719802 39719973 -102551471 + MIR SINE MIR 14 212 -50 247 289 16 33 chr9 39720987 39721108 -102550336 - L2 LINE L2 -53 3219 3101 475 218 16 129 chr9 39721528 39721569 -102549875 + MER5B DNA MER1_type 1 45 -133 2413 88 0 3 chr9 39721569 39721864 -102549580 + AluY SINE Alu 1 294 -17 2335 102 7 0 chr9 39721873 39722167 -102549277 + AluSg SINE Alu 1 296 -14 475 218 16 129 chr9 39722167 39722308 -102549136 + MER5B DNA MER1_type 53 171 -7 228 67 0 0 chr9 39722844 39722874 -102548570 + (GGGGA)n Simple_repeat Simple_repeat 3 32 0 247 185 0 37 chr9 39723028 39723082 -102548362 - L2 LINE L2 0 3313 3262 1507 244 83 19 chr9 39723103 39723749 -102547695 - L2 LINE L2 0 3313 2608 448 329 0 0 chr9 39724742 39724885 -102546559 + MER91A DNA MER1_type 1 143 -53 728 121 7 29 chr9 39725166 39725306 -102546138 - FRAM SINE Alu -39 137 1 205 298 10 67 chr9 39725360 39725464 -102545980 - MIR SINE MIR -43 165 67 294 333 39 32 chr9 39725550 39725706 -102545738 + MIR SINE MIR 90 246 -16 2216 107 0 0 chr9 39725708 39725988 -102545456 + AluSg SINE Alu 1 280 -30 311 247 0 35 chr9 39727390 39727475 -102543969 + GA-rich Low_complexity Low_complexity 4 85 0 197 283 221 0 chr9 39728591 39728704 -102542740 + MIR3 SINE MIR 61 198 -10 251 222 0 14 chr9 39729569 39729641 -102541803 + CT-rich Low_complexity Low_complexity 1 71 0 216 244 78 44 chr9 39731549 39731639 -102539805 + MIR SINE MIR 162 254 -8 1383 63 0 0 chr9 39731668 39731927 -102539517 + (TGGA)n Simple_repeat Simple_repeat 1 259 0 258 296 76 81 chr9 39734146 39734318 -102537126 - MIR3 SINE MIR -6 202 32 427 277 121 107 chr9 39734687 39735117 -102536327 + L2 LINE L2 2837 3272 0 280 346 46 20 chr9 39735511 39735664 -102535780 - L3 LINE CR1 -149 1428 1272 894 226 77 17 chr9 39736620 39736855 -102534589 - MIR SINE MIR 0 262 14 343 346 10 0 chr9 39737026 39737130 -102534314 - L2 LINE L2 -9 3263 3159 1413 234 93 27 chr9 39737274 39737748 -102533696 + MLT1D LTR MaLR 1 505 0 226 336 140 0 chr9 39738544 39738687 -102532757 + L3 LINE CR1 666 828 -749 1961 145 6 22 chr9 39738803 39739114 -102532330 + AluJb SINE Alu 1 306 -6 1465 214 49 40 chr9 39739538 39739987 -102531457 + MLT1D LTR MaLR 53 505 0 200 291 0 0 chr9 39740188 39740243 -102531201 - L2 LINE L2 -253 3060 3006 271 291 0 43 chr9 39740723 39740840 -102530604 + GA-rich Low_complexity Low_complexity 1 112 0 1906 225 150 19 chr9 39741780 39742348 -102529096 - MER115 DNA AcHobo 0 693 52 2103 125 0 47 chr9 39742378 39742699 -102528745 - AluSx SINE Alu -6 306 1 1001 166 33 5 chr9 39742824 39743035 -102528409 + L1MA7 LINE L1 6075 6291 0 23 54 0 0 chr9 39743035 39743072 -102528372 + AT_rich Low_complexity Low_complexity 1 37 0 360 125 0 0 chr9 39744065 39744129 -102527315 + (CA)n Simple_repeat Simple_repeat 1 64 0 221 296 130 0 chr9 39744517 39744632 -102526812 - L2 LINE L2 -1 3271 3142 824 313 87 41 chr9 39745132 39745228 -102526216 + L1M4 LINE L1 3070 3160 -2986 1796 131 67 25 chr9 39745228 39745510 -102525934 + AluSx SINE Alu 9 302 -10 824 313 87 41 chr9 39745510 39745825 -102525619 + L1M4 LINE L1 3160 3500 -2646 234 298 37 31 chr9 39745922 39746083 -102525361 + L1P LINE L1 3589 3750 -2396 1068 128 5 32 chr9 39746594 39746781 -102524663 + MER49 LTR ERV1 715 896 -27 1534 214 61 6 chr9 39747344 39748370 -102523074 + L1 LINE L1 2637 3757 -2389 450 281 40 62 chr9 39748545 39748769 -102522675 - MIR SINE MIR -10 252 34 309 272 10 39 chr9 39748814 39748972 -102522472 + MIR SINE MIR 64 214 -48 713 175 0 0 chr9 39750336 39750456 -102520988 + FLAM_A SINE Alu 1 120 -13 919 275 0 4 chr9 39751019 39751259 -102520185 + MIR SINE MIR 1 239 -23 371 324 98 57 chr9 39751923 39752167 -102519277 - L2 LINE L2 0 3272 3019 374 269 39 18 chr9 39752408 39752585 -102518859 - MIR SINE MIR -71 191 19 376 311 158 6 chr9 39752852 39753016 -102518428 + MIR3 SINE MIR 20 208 0 2402 160 49 39 chr9 39753218 39753712 -102517732 + MLT1D LTR MaLR 1 499 -6 529 208 135 78 chr9 39753883 39754075 -102517369 - MIR SINE MIR -36 226 24 320 337 10 0 chr9 39754357 39754455 -102516989 - L3 LINE CR1 -143 1434 1336 1826 148 4 0 chr9 39755039 39755302 -102516142 + AluJb SINE Alu 35 298 -14 229 296 0 0 chr9 39755526 39755580 -102515864 + L2 LINE L2 3127 3180 -92 193 286 0 0 chr9 39756524 39756580 -102514864 - L2 LINE L2 -298 2974 2919 877 249 17 9 chr9 39756698 39756902 -102514542 - MER102a DNA MER1_type -1090 327 119 1818 129 0 4 chr9 39756902 39757157 -102514287 - AluJb SINE Alu -5 307 54 877 249 17 9 chr9 39757157 39757185 -102514259 - MER102a DNA MER1_type -1298 119 93 618 231 108 51 chr9 39757270 39757565 -102513879 - L1MC4a LINE L1 -1767 6041 5730 204 40 0 0 chr9 39758021 39758046 -102513398 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 336 302 177 36 chr9 39758066 39758371 -102513073 + L2 LINE L2 2945 3292 -21 834 106 8 15 chr9 39758415 39758547 -102512897 - FLAM_C SINE Alu -2 131 1 732 279 41 0 chr9 39759325 39759544 -102511900 - MIR SINE MIR 0 262 35 382 224 121 0 chr9 39759660 39759776 -102511668 + MIR3 SINE MIR 35 164 -44 358 281 38 41 chr9 39759928 39760118 -102511326 - MIR3 SINE MIR -61 147 11 1985 249 48 15 chr9 39761108 39761813 -102509631 + MER20B DNA MER1_type 6 778 -5 549 277 57 109 chr9 39762021 39762577 -102508867 - L1MC4a LINE L1 -529 5592 5356 416 286 82 18 chr9 39762648 39762819 -102508625 - L1MC4a LINE L1 -846 5300 5119 1821 153 53 0 chr9 39762877 39763159 -102508285 + AluJo SINE Alu 1 297 -15 293 332 99 14 chr9 39763272 39763624 -102507820 - L1MC4a LINE L1 -1217 4929 4548 21 0 0 0 chr9 39763722 39763743 -102507701 + AT_rich Low_complexity Low_complexity 1 21 0 2086 167 0 0 chr9 39763761 39764072 -102507372 - AluSx SINE Alu -1 311 1 21 82 0 0 chr9 39764113 39764162 -102507282 + AT_rich Low_complexity Low_complexity 1 49 0 509 239 139 46 chr9 39764390 39764686 -102506758 - MER102b DNA MER1_type -11 330 1 14960 99 24 22 chr9 39764779 39765472 -102505972 + Tigger1 DNA MER2_type 4 694 -1724 2003 150 7 0 chr9 39765472 39765765 -102505679 + AluJo SINE Alu 5 299 -13 14960 99 24 22 chr9 39765765 39766649 -102504795 + Tigger1 DNA MER2_type 694 1589 -829 2540 78 3 0 chr9 39766649 39766955 -102504489 + AluSg1 SINE Alu 1 307 -2 14960 99 24 22 chr9 39766955 39767663 -102503781 + Tigger1 DNA MER2_type 1589 2294 -124 1238 146 15 0 chr9 39767665 39767864 -102503580 - MER46A DNA MER2_type -2 234 33 743 156 0 37 chr9 39767874 39767891 -102503553 + Tigger1 DNA MER2_type 2288 2304 -114 2578 78 3 0 chr9 39767891 39768200 -102503244 - AluSq SINE Alu -3 310 1 743 156 0 37 chr9 39768200 39768317 -102503127 + Tigger1 DNA MER2_type 2304 2417 -1 229 239 239 0 chr9 39768429 39768521 -102502923 - MIR3 SINE MIR -33 175 62 607 290 138 17 chr9 39768539 39768770 -102502674 + MIR SINE MIR 4 262 0 252 364 66 0 chr9 39768842 39768963 -102502481 + MIR SINE MIR 19 147 -61 560 338 54 4 chr9 39769696 39769936 -102501508 - MIR SINE MIR -2 260 9 408 262 28 0 chr9 39771002 39771109 -102500335 - MIR3 SINE MIR -6 202 93 2041 151 7 0 chr9 39771525 39771817 -102499627 + AluJb SINE Alu 1 294 -18 743 127 16 0 chr9 39771822 39771948 -102499496 + GA-rich Low_complexity Low_complexity 1 128 0 806 304 33 28 chr9 39772384 39772775 -102498669 + L1M4 LINE L1 4633 5025 -1121 750 223 73 59 chr9 39773071 39773291 -102498153 - MIR SINE MIR -11 251 29 516 288 85 5 chr9 39773330 39773542 -102497902 - MER112 DNA MER1_type -31 229 1 202 301 249 24 chr9 39773850 39774059 -102497385 - L2 LINE L2 -3 3269 3014 2420 104 0 3 chr9 39774788 39775095 -102496349 - AluSx SINE Alu -4 308 3 334 298 149 41 chr9 39775341 39775656 -102495788 + L2 LINE L2 2924 3272 0 724 143 14 0 chr9 39776284 39776424 -102495020 + GA-rich Low_complexity Low_complexity 3 144 0 2064 134 3 3 chr9 39776823 39777114 -102494330 - AluSx SINE Alu -21 291 1 2247 119 0 10 chr9 39777304 39777614 -102493830 - AluJb SINE Alu -5 307 1 360 327 7 17 chr9 39777662 39777811 -102493633 + MIR SINE MIR 20 164 -64 229 284 59 0 chr9 39778371 39778473 -102492971 + MIR3 SINE MIR 96 203 -5 565 204 64 143 chr9 39778479 39778654 -102492790 + L1MC5 LINE L1 7432 7619 -342 2313 99 0 7 chr9 39778654 39778957 -102492487 + AluSx SINE Alu 1 301 -11 565 204 64 143 chr9 39778957 39779080 -102492364 + L1MC5 LINE L1 7619 7696 -265 1760 172 42 0 chr9 39779080 39779365 -102492079 + AluJo SINE Alu 1 297 -15 565 204 64 143 chr9 39779365 39779442 -102492002 + L1MC5 LINE L1 7696 7778 -183 1394 253 59 5 chr9 39779451 39779839 -102491605 + L1MB8 LINE L1 5770 6178 0 2020 134 43 3 chr9 39779961 39780260 -102491184 + AluSx SINE Alu 1 311 -1 301 315 91 0 chr9 39780876 39781019 -102490425 + MIR3 SINE MIR 29 184 -24 302 304 68 31 chr9 39781181 39781342 -102490102 + MIR SINE MIR 9 175 -87 1016 167 42 23 chr9 39781447 39781662 -102489782 + L1MD1 LINE L1 6021 6239 -3 434 275 77 97 chr9 39781751 39781998 -102489446 + L2 LINE L2 3030 3271 -1 2310 108 7 0 chr9 39782187 39782493 -102488951 + AluSp SINE Alu 1 308 -5 329 210 328 0 chr9 39782832 39782951 -102488493 - L3 LINE CR1 -119 1458 1301 429 70 0 0 chr9 39783904 39783961 -102487483 + (CA)n Simple_repeat Simple_repeat 1 57 0 181 310 50 40 chr9 39783990 39784090 -102487354 + L3 LINE CR1 1357 1457 -120 702 226 159 26 chr9 39784242 39784468 -102486976 - MIR SINE MIR -3 259 4 344 261 194 37 chr9 39784478 39784612 -102486832 - MIR SINE MIR -106 156 2 199 308 60 60 chr9 39784700 39784833 -102486611 + L2 LINE L2 2921 3053 -219 348 133 0 0 chr9 39786861 39786921 -102484523 + (GA)n Simple_repeat Simple_repeat 2 61 0 489 254 0 25 chr9 39787838 39787960 -102483484 + L2 LINE L2 3178 3296 -17 493 286 121 15 chr9 39788212 39788411 -102483033 + MIR SINE MIR 9 228 -34 230 249 0 0 chr9 39788454 39788511 -102482933 + MIR SINE MIR 36 92 -116 182 254 91 0 chr9 39788995 39789050 -102482394 - MIR SINE MIR -113 95 36 319 275 114 8 chr9 39789279 39789410 -102482034 - MIR3 SINE MIR -20 188 44 392 257 124 9 chr9 39789739 39789852 -102481592 - MIR SINE MIR -103 159 34 366 23 0 0 chr9 39790613 39790656 -102480788 + (CA)n Simple_repeat Simple_repeat 2 44 0 1799 175 7 0 chr9 39790991 39791283 -102480161 + AluJo SINE Alu 1 294 -18 760 242 45 6 chr9 39791368 39791546 -102479898 - MIR SINE MIR -70 192 8 1870 163 3 22 chr9 39792311 39792624 -102478820 - AluJb SINE Alu -1 311 5 824 255 27 0 chr9 39792838 39793026 -102478418 + MIR SINE MIR 53 245 -17 1363 142 102 0 chr9 39794475 39794701 -102476743 - AluJo SINE Alu -3 309 61 220 220 0 0 chr9 39794728 39794778 -102476666 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 478 304 82 25 chr9 39795084 39795327 -102476117 - MIR SINE MIR 0 262 6 281 248 70 83 chr9 39796041 39796138 -102475306 - MIR SINE MIR -1 261 164 2335 68 4 0 chr9 39796138 39796447 -102474997 - AluY SINE Alu 0 310 1 281 248 70 83 chr9 39796447 39796505 -102474939 - MIR SINE MIR -98 164 107 226 315 196 0 chr9 39796672 39796764 -102474680 - MIR SINE MIR -150 112 3 917 300 63 28 chr9 39797488 39797818 -102473626 - L3 LINE CR1 -1 1576 1228 2311 99 0 10 chr9 39797818 39798121 -102473323 - AluSg SINE Alu -2 308 9 917 300 63 28 chr9 39798121 39798187 -102473257 - L3 LINE CR1 -349 1228 1166 436 309 60 28 chr9 39798309 39798742 -102472702 - L1MEd LINE L1 -3499 2630 2184 21 0 0 0 chr9 39798824 39798845 -102472599 + AT_rich Low_complexity Low_complexity 1 21 0 3236 220 75 31 chr9 39799219 39799322 -102472122 - L1MCb LINE L1 -4009 2736 2639 1522 119 5 5 chr9 39799322 39799532 -102471912 - AluSg/x SINE Alu -7 303 94 3236 220 75 31 chr9 39799532 39800878 -102470566 - L1MCb LINE L1 -4106 2639 1009 2098 143 3 0 chr9 39800878 39801171 -102470273 + AluJb SINE Alu 1 294 -18 3236 220 75 31 chr9 39801171 39801324 -102470120 - L1MCb LINE L1 -5736 1009 864 294 271 23 45 chr9 39801347 39801480 -102469964 - L1MCb LINE L1 -6292 272 143 * 645 281 68 50 chr9 39801476 39802396 -102469048 - L1MEd LINE L1 -788 1702 653 437 336 35 35 chr9 39802567 39802853 -102468591 - L1MEd LINE L1 -5711 408 123 308 244 64 26 chr9 39802865 39802943 -102468501 - L1MC4 LINE L1 -1334 6708 6628 26 74 0 0 chr9 39803003 39803057 -102468387 + AT_rich Low_complexity Low_complexity 1 54 0 213 94 0 0 chr9 39803318 39803350 -102468094 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 296 292 115 0 chr9 39803514 39803610 -102467834 - MIR3 SINE MIR -11 197 91 208 328 140 35 chr9 39805707 39805878 -102465566 + L2 LINE L2 2617 2805 -509 448 295 79 16 chr9 39806294 39806484 -102464960 - L3 LINE CR1 -2 1575 1374 311 309 151 72 chr9 39806511 39806815 -102464629 - L3 LINE CR1 -343 1234 907 392 317 104 39 chr9 39806884 39807114 -102464330 + MIR SINE MIR 13 257 -5 201 317 38 24 chr9 39807814 39808046 -102463398 + L2 LINE L2 2815 3050 -263 264 167 0 0 chr9 39808885 39808933 -102462511 + (CA)n Simple_repeat Simple_repeat 2 49 0 371 208 158 42 chr9 39809725 39809845 -102461599 - MIR3 SINE MIR -71 137 4 260 340 133 13 chr9 39810912 39811062 -102460382 + MIR3 SINE MIR 36 203 -5 2312 93 0 3 chr9 39811086 39811388 -102460056 + AluY SINE Alu 1 301 -10 2347 105 0 10 chr9 39811394 39811708 -102459736 + AluSq SINE Alu 1 311 -2 482 307 141 18 chr9 39811964 39812459 -102458985 + L2 LINE L2 2766 3310 -3 363 280 65 0 chr9 39812462 39812555 -102458889 + MIR3 SINE MIR 78 176 -32 607 234 43 14 chr9 39814009 39814150 -102457294 - MIR SINE MIR -29 233 89 1374 273 70 18 chr9 39814297 39814741 -102456703 + L1MC4a LINE L1 5488 5954 -1854 261 139 0 0 chr9 39815995 39816038 -102455406 + (CA)n Simple_repeat Simple_repeat 1 43 0 324 138 17 0 chr9 39816790 39816848 -102454596 + AluS SINE Alu 2 60 -248 222 291 101 118 chr9 39817033 39817438 -102454006 - L2 LINE L2 0 3313 2916 200 200 0 0 chr9 39817839 39817884 -102453560 + L2 LINE L2 3017 3061 -211 256 298 36 12 chr9 39818179 39818263 -102453181 - L2 LINE L2 -51 3221 3136 525 281 28 28 chr9 39819355 39819533 -102451911 + MIR3 SINE MIR 2 179 -29 2406 93 0 0 chr9 39819833 39820133 -102451311 + AluSx SINE Alu 1 300 -12 1116 42 0 0 chr9 39820134 39820276 -102451168 + (GGAAA)n Simple_repeat Simple_repeat 4 145 0 1862 143 0 52 chr9 39820672 39820811 -102450633 + AluJo SINE Alu 1 146 -166 2212 121 20 0 chr9 39820811 39821109 -102450335 + AluSx SINE Alu 1 304 -8 1862 143 0 52 chr9 39821109 39821277 -102450167 + AluJo SINE Alu 146 292 -20 694 284 51 9 chr9 39821451 39821666 -102449778 - MIR SINE MIR -17 245 22 416 298 21 35 chr9 39821711 39821852 -102449592 + MIR SINE MIR 118 256 -6 456 234 38 3 chr9 39822205 39822330 -102449114 - MIR SINE MIR -57 151 64 778 252 39 47 chr9 39822372 39822470 -102448974 + MIR SINE MIR 4 101 -161 2405 93 0 0 chr9 39822470 39822772 -102448672 - AluY SINE Alu -9 302 1 778 252 39 47 chr9 39822772 39822931 -102448513 + MIR SINE MIR 101 259 -3 207 245 404 0 chr9 39822944 39823038 -102448406 + L2 LINE L2 3137 3268 -4 192 315 19 0 chr9 39823558 39823612 -102447832 - L2 LINE L2 -14 3258 3204 594 147 120 33 chr9 39824231 39824381 -102447063 - MIR SINE MIR -16 246 84 502 233 58 0 chr9 39824399 39824519 -102446925 - MIR SINE MIR -129 133 7 1621 147 132 7 chr9 39824609 39824881 -102446563 - AluY SINE Alu -5 306 1 260 315 76 33 chr9 39824886 39825070 -102446374 - L2 LINE L2 -254 3018 2827 207 0 0 0 chr9 39825591 39825614 -102445830 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 450 243 17 23 chr9 39826625 39826801 -102444643 - MIR SINE MIR -59 203 32 310 352 62 17 chr9 39826913 39827089 -102444355 - MIR3 SINE MIR -9 199 16 1481 218 50 52 chr9 39827954 39828507 -102442937 + L2 LINE L2 2758 3309 -4 222 274 32 0 chr9 39828839 39828901 -102442543 + MIR SINE MIR 55 118 -144 2110 130 3 0 chr9 39829081 39829381 -102442063 + AluSx SINE Alu 12 312 0 2562 237 65 1 chr9 39830011 39830706 -102440738 + MER20B DNA MER1_type 34 772 -11 1137 114 0 0 chr9 39830712 39830861 -102440583 - AluJb SINE Alu -163 149 1 498 318 33 0 chr9 39831416 39831523 -102439921 + MIR SINE MIR 7 122 -140 2403 78 0 47 chr9 39831523 39831843 -102439601 - AluSq SINE Alu -8 305 1 498 318 33 0 chr9 39831843 39831886 -102439558 + MIR SINE MIR 122 162 -100 444 259 0 0 chr9 39832059 39832167 -102439277 - MIR3 SINE MIR -34 174 67 219 330 53 0 chr9 39832574 39832668 -102438776 - L2 LINE L2 -36 3236 3138 22 70 0 0 chr9 39833153 39833196 -102438248 + GC_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr9 39833226 39833257 -102438187 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 39833344 39833365 -102438079 + GC_rich Low_complexity Low_complexity 1 21 0 46 54 0 0 chr9 39833405 39833479 -102437965 + GC_rich Low_complexity Low_complexity 1 74 0 246 331 57 16 chr9 39834072 39834196 -102437248 - MIR SINE MIR -21 241 113 443 313 61 0 chr9 39834314 39834477 -102436967 - MIR SINE MIR -19 243 71 183 299 126 0 chr9 39834583 39834670 -102436774 - MIR3 SINE MIR -53 155 58 180 77 0 0 chr9 39834900 39834926 -102436518 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 200 338 14 0 chr9 39835089 39835160 -102436284 + G-rich Low_complexity Low_complexity 5 76 0 2041 135 0 7 chr9 39835486 39835774 -102435670 + AluJo SINE Alu 21 306 -6 439 286 113 20 chr9 39835889 39836092 -102435352 - MIR SINE MIR 0 262 41 602 216 101 26 chr9 39836402 39836614 -102434830 + MIR SINE MIR 22 261 -1 468 327 78 37 chr9 39836917 39837238 -102434206 - L2 LINE L2 -7 3265 2932 416 318 188 0 chr9 39837228 39837420 -102434024 - MIR SINE MIR 0 262 35 * 365 288 184 46 chr9 39837428 39837775 -102433669 - L2 LINE L2 -385 2929 2535 2149 133 3 0 chr9 39837915 39838216 -102433228 + AluJb SINE Alu 1 302 -10 206 183 232 49 chr9 39838336 39838418 -102433026 - MIR SINE MIR -91 117 21 605 208 78 0 chr9 39838423 39838577 -102432867 - MIR3 SINE MIR -10 198 33 1943 173 92 50 chr9 39839910 39840009 -102431435 + Charlie1b DNA MER1_type 1 94 -2667 737 70 0 0 chr9 39840009 39840109 -102431335 - L1PA8 LINE L1 -3 6169 6070 1943 173 92 50 chr9 39840109 39840511 -102430933 + Charlie1b DNA MER1_type 94 523 0 210 321 117 31 chr9 39840550 39840712 -102430732 - MIR3 SINE MIR -7 201 26 518 236 60 80 chr9 39841791 39841990 -102429454 - Charlie8 DNA MER1_type -2211 206 12 295 223 68 39 chr9 39842747 39842850 -102428594 + MIR3 SINE MIR 79 184 -24 326 281 50 44 chr9 39843316 39843476 -102427968 - MIR SINE MIR -12 250 90 199 212 24 0 chr9 39843910 39843995 -102427449 + GA-rich Low_complexity Low_complexity 1 87 0 447 344 57 16 chr9 39845101 39845348 -102426096 - L3 LINE CR1 -103 1474 1218 261 237 0 17 chr9 39845580 39845639 -102425805 - L2 LINE L2 0 3272 3215 1080 156 21 5 chr9 39845641 39845833 -102425611 + Charlie5 DNA MER1_type 1 195 -2417 1297 158 27 4 chr9 39845842 39846101 -102425343 + Charlie5 DNA MER1_type 2358 2622 0 200 289 0 0 chr9 39846654 39846706 -102424738 + MIR SINE MIR 94 145 -63 637 215 0 7 chr9 39847559 39847694 -102423750 + AluSq/x SINE Alu 2 135 -178 887 284 108 38 chr9 39847756 39848227 -102423217 - L3 LINE CR1 -91 1486 983 240 35 0 0 chr9 39848898 39848927 -102422517 + (T)n Simple_repeat Simple_repeat 1 29 0 243 0 0 0 chr9 39850242 39850269 -102421175 + (A)n Simple_repeat Simple_repeat 1 27 0 584 219 124 55 chr9 39850470 39850644 -102420800 - MIR SINE MIR 0 262 71 2006 122 26 23 chr9 39850644 39850947 -102420497 + AluJo SINE Alu 2 305 -7 584 219 124 55 chr9 39850947 39850973 -102420471 - MIR SINE MIR -191 71 48 380 275 99 24 chr9 39851064 39851233 -102420211 - MIR SINE MIR -62 146 13 362 323 0 0 chr9 39851917 39852010 -102419434 + MIR SINE MIR 40 132 -76 396 327 7 26 chr9 39852546 39852699 -102418745 - MIR3 SINE MIR -32 176 27 21 0 0 0 chr9 39853530 39853551 -102417893 + AT_rich Low_complexity Low_complexity 1 21 0 304 262 5 129 chr9 39853745 39853947 -102417497 + MIR3 SINE MIR 3 179 -29 358 347 28 0 chr9 39853954 39854098 -102417346 + MIR3 SINE MIR 57 204 -4 304 194 0 14 chr9 39854778 39854850 -102416594 - L1ME4a LINE L1 -2 6119 6049 1139 165 0 0 chr9 39854958 39855134 -102416310 - AluSg/x SINE Alu -1 311 136 2169 120 19 7 chr9 39855135 39855443 -102416001 - AluSx SINE Alu 0 312 1 264 233 0 0 chr9 39855447 39855507 -102415937 - L1ME4a LINE L1 -215 5906 5847 915 269 45 12 chr9 39856304 39856546 -102414898 + MIR SINE MIR 13 262 0 1704 122 20 20 chr9 39856632 39856928 -102414516 + L1MA2 LINE L1 6009 6304 0 280 333 0 0 chr9 39857407 39857479 -102413965 - MIR SINE MIR -63 145 74 1875 141 4 4 chr9 39857970 39858240 -102413204 + AluJb SINE Alu 43 312 0 804 242 24 40 chr9 39858320 39858568 -102412876 + Charlie8 DNA MER1_type 26 269 -2148 409 218 53 8 chr9 39859702 39859835 -102411609 + MER113 DNA MER1_type? 28 166 -355 953 121 0 8 chr9 39860057 39860189 -102411255 + FLAM_C SINE Alu 1 131 -12 664 166 37 111 chr9 39860253 39860470 -102410974 + MER102b DNA MER1_type 139 339 -2 265 286 0 0 chr9 39860470 39860532 -102410912 + MER113 DNA MER1_type? 456 517 -4 356 253 11 0 chr9 39861532 39861619 -102409825 - MIR SINE MIR -90 118 31 1286 165 53 47 chr9 39862381 39862669 -102408775 + MER33 DNA MER1_type 1 293 -2292 2519 63 3 3 chr9 39862669 39862969 -102408475 - AluSp SINE Alu -13 300 1 1286 165 53 47 chr9 39862969 39863002 -102408442 + MER33 DNA MER1_type 293 324 0 216 135 0 0 chr9 39863116 39863153 -102408291 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 233 306 188 21 chr9 39864332 39864476 -102406968 - MIR SINE MIR -75 187 20 24 0 0 0 chr9 39864502 39864526 -102406918 + AT_rich Low_complexity Low_complexity 1 24 0 442 267 22 39 chr9 39865084 39865245 -102406199 + MIR SINE MIR 21 183 -60 371 267 27 20 chr9 39866215 39866361 -102405083 + CT-rich Low_complexity Low_complexity 1 147 0 228 320 39 0 chr9 39866949 39867027 -102404417 + MIR SINE MIR 63 143 -65 256 282 100 45 chr9 39871123 39871233 -102400211 + MIR3 SINE MIR 39 154 -54 23 0 0 0 chr9 39874819 39874842 -102396602 + GC_rich Low_complexity Low_complexity 1 23 0 238 253 22 66 chr9 39875324 39875415 -102396029 + MIR3 SINE MIR 117 203 -5 361 275 63 49 chr9 39876872 39877014 -102394430 - MIR3 SINE MIR -14 194 51 305 266 56 70 chr9 39877391 39877534 -102393910 - MIR3 SINE MIR -34 174 34 25 0 0 0 chr9 39878068 39878093 -102393351 + AT_rich Low_complexity Low_complexity 1 25 0 242 303 16 57 chr9 39878714 39878836 -102392608 + MIR3 SINE MIR 54 170 -38 261 0 0 0 chr9 39880689 39880718 -102390726 + (CA)n Simple_repeat Simple_repeat 2 30 0 321 26 0 0 chr9 39881178 39881216 -102390228 + (T)n Simple_repeat Simple_repeat 1 38 0 221 182 18 0 chr9 39887225 39887280 -102384164 + (TA)n Simple_repeat Simple_repeat 2 57 0 357 306 118 6 chr9 39889228 39889398 -102382046 - MER5A DNA MER1_type 0 189 1 2269 121 7 0 chr9 39889756 39890062 -102381382 - AluSx SINE Alu -4 308 1 182 304 80 27 chr9 39890162 39890274 -102381170 - L2 LINE L2 -266 3006 2889 2036 153 0 0 chr9 39890353 39890648 -102380796 - AluJb SINE Alu -17 295 1 272 243 0 93 chr9 39891114 39891221 -102380223 + MIR SINE MIR 102 198 -64 2443 97 0 0 chr9 39891293 39891602 -102379842 - AluSg SINE Alu 0 310 2 213 94 0 0 chr9 39892006 39892038 -102379406 + (CA)n Simple_repeat Simple_repeat 2 33 0 1855 144 32 3 chr9 39892229 39892513 -102378931 + AluJb SINE Alu 1 292 -20 2055 199 22 17 chr9 39892528 39892935 -102378509 - MER47B DNA MER2_type -8 410 2 340 266 195 18 chr9 39893038 39893207 -102378237 - L3 LINE CR1 -76 1501 1303 2247 116 0 0 chr9 39893570 39893862 -102377582 + AluSx SINE Alu 2 293 -19 386 257 40 54 chr9 39894424 39894572 -102376872 - MIR3 SINE MIR -6 202 57 600 252 87 44 chr9 39894601 39894807 -102376637 - MIR SINE MIR -36 226 12 581 287 144 42 chr9 39895506 39895984 -102375460 - L1ME4a LINE L1 -71 6050 5524 318 213 75 43 chr9 39896180 39896274 -102375170 - MIR SINE MIR -109 153 57 492 287 14 14 chr9 39896536 39896679 -102374765 - MIR3 SINE MIR -21 187 45 559 143 0 11 chr9 39896750 39896841 -102374603 - AluJb SINE Alu -39 273 184 935 132 0 59 chr9 39896841 39896993 -102374451 - FLAM_C SINE Alu 0 143 1 232 277 72 0 chr9 39897063 39897146 -102374298 + MER103 DNA DNA 1 89 -77 234 148 34 91 chr9 39898508 39898586 -102372858 + MIR SINE MIR 84 143 -65 232 239 13 138 chr9 39898626 39898785 -102372659 + MER5B DNA MER1_type 40 178 0 406 286 44 59 chr9 39898875 39898974 -102372470 + MIR3 SINE MIR 9 108 -100 2112 130 3 3 chr9 39898974 39899273 -102372171 + AluSx SINE Alu 2 300 -12 406 286 44 59 chr9 39899273 39899376 -102372068 + MIR3 SINE MIR 108 208 0 2521 76 0 0 chr9 39899770 39900071 -102371373 - AluSg SINE Alu -9 301 1 293 157 36 60 chr9 39900217 39900300 -102371144 - L1ME3A LINE L1 -227 5943 5863 1468 163 125 0 chr9 39900499 39900763 -102370681 + AluJb SINE Alu 1 297 -15 192 272 48 78 chr9 39900937 39901040 -102370404 + MIR SINE MIR 96 144 -64 632 258 11 26 chr9 39901370 39901560 -102369884 - MIR3 SINE MIR -6 202 16 365 240 124 41 chr9 39901838 39901959 -102369485 + L2 LINE L2 3142 3272 0 192 296 0 0 chr9 39902524 39902566 -102368878 + MIR SINE MIR 30 71 -137 1097 222 7 58 chr9 39902566 39902759 -102368685 + MIR SINE MIR 2 178 -84 888 193 0 24 chr9 39902759 39902925 -102368519 + FRAM SINE Alu 1 162 -4 1097 222 7 58 chr9 39902925 39903006 -102368438 + MIR SINE MIR 178 262 0 491 264 65 7 chr9 39903008 39903163 -102368281 + L2 LINE L2 2927 3090 -223 245 329 0 0 chr9 39903837 39903910 -102367534 + GA-rich Low_complexity Low_complexity 2 74 0 185 105 0 26 chr9 39903963 39903993 -102367451 + (TA)n Simple_repeat Simple_repeat 1 31 -6 2143 122 7 0 chr9 39903993 39904287 -102367157 - AluSx SINE Alu -16 296 1 185 105 0 26 chr9 39904287 39904294 -102367150 + (TA)n Simple_repeat Simple_repeat 31 37 0 1709 170 14 17 chr9 39904811 39904973 -102366471 - AluJb SINE Alu -19 293 131 216 0 0 0 chr9 39904973 39904997 -102366447 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1709 170 14 17 chr9 39904997 39905128 -102366316 - AluJb SINE Alu -181 131 1 586 226 155 7 chr9 39905260 39905415 -102366029 + MER5A DNA MER1_type 4 181 -8 362 357 133 34 chr9 39905646 39906411 -102365033 + L2 LINE L2 1820 2660 -654 1790 158 3 20 chr9 39906472 39906770 -102364674 - AluJb SINE Alu -19 293 1 957 103 15 29 chr9 39906932 39907068 -102364376 + AluJo SINE Alu 1 134 -178 2127 81 33 4 chr9 39907168 39907477 -102363967 + AluY SINE Alu 1 317 0 1644 195 51 48 chr9 39907661 39907897 -102363547 + MER63B DNA MER1_type 1 235 -827 1663 189 10 16 chr9 39907897 39908204 -102363240 + AluJo SINE Alu 1 305 -7 1644 195 51 48 chr9 39908204 39908256 -102363188 + MER63B DNA MER1_type 235 285 -777 2334 104 0 3 chr9 39908256 39908554 -102362890 - AluSx SINE Alu -13 299 3 1644 195 51 48 chr9 39908554 39908699 -102362745 + MER63B DNA MER1_type 285 436 0 268 319 64 78 chr9 39908721 39909078 -102362366 + L2 LINE L2 2596 2947 -367 853 127 0 15 chr9 39909276 39909410 -102362034 - FLAM_C SINE Alu 0 133 2 492 82 0 124 chr9 39909723 39909755 -102361689 + L1MB3 LINE L1 5826 5860 -323 1496 193 10 43 chr9 39909755 39910060 -102361384 - AluJo SINE Alu -17 295 1 492 82 0 124 chr9 39910060 39910124 -102361320 + L1MB3 LINE L1 5860 5910 -273 1025 170 0 0 chr9 39910152 39910311 -102361133 + AluJb SINE Alu 145 303 -9 1406 170 0 0 chr9 39910311 39910552 -102360892 + L1MB3 LINE L1 5905 6145 -38 968 182 0 12 chr9 39910555 39910720 -102360724 - AluJb SINE Alu -16 296 134 2373 110 0 0 chr9 39910720 39911021 -102360423 - AluSx SINE Alu -11 301 1 252 86 0 0 chr9 39911063 39911098 -102360346 + (A)n Simple_repeat Simple_repeat 1 35 0 630 221 72 67 chr9 39961630 39962162 -102309282 - L1ME LINE L1 -4760 1320 782 1909 140 27 3 chr9 39962381 39962673 -102308771 - AluJb SINE Alu -13 299 1 706 272 194 26 chr9 39962875 39963221 -102308223 + L2 LINE L2 2456 2859 -455 23 54 0 0 chr9 39963740 39963777 -102307667 + AT_rich Low_complexity Low_complexity 1 37 0 452 250 199 19 chr9 39964222 39964378 -102307066 + MIR3 SINE MIR 10 193 -15 981 214 41 19 chr9 39964747 39965267 -102306177 - L1MC4 LINE L1 0 8042 7420 814 121 0 24 chr9 39965438 39965562 -102305882 + AluSq/x SINE Alu 1 121 -191 755 223 112 0 chr9 39966892 39967089 -102304355 - MER58A DNA MER1_type -2 222 4 194 214 24 119 chr9 39968941 39969025 -102302419 - L2 LINE L2 -10 3262 3187 2279 95 10 0 chr9 39969035 39969331 -102302113 + AluSx SINE Alu 1 299 -13 4799 97 0 1 chr9 39969465 39970195 -102301249 - L1P LINE L1 -789 5357 4629 860 158 7 0 chr9 39970290 39970442 -102301002 + MSTD LTR MaLR 1 153 -243 2158 118 0 3 chr9 39970890 39971178 -102300266 - AluSg SINE Alu -23 287 1 472 262 112 54 chr9 39971191 39971485 -102299959 - L1MDb LINE L1 -3580 2960 2650 265 149 0 68 chr9 39971614 39971688 -102299756 + (CCCCCT)n Simple_repeat Simple_repeat 3 71 0 1661 175 22 0 chr9 39971740 39972014 -102299430 - AluJb SINE Alu -32 280 1 1297 201 4 8 chr9 39972249 39972493 -102298951 + AluJo SINE Alu 44 286 -26 353 280 125 15 chr9 39972550 39972750 -102298694 - L1MDb LINE L1 -4583 1957 1736 2379 96 40 6 chr9 39972852 39973206 -102298238 + L1PA8 LINE L1 5799 6164 -8 403 239 79 35 chr9 39973235 39973443 -102298001 - MIR SINE MIR -38 224 4 1726 140 75 4 chr9 39973734 39974013 -102297431 + AluJb SINE Alu 1 299 -13 391 242 44 11 chr9 39974792 39974883 -102296561 - L3 LINE CR1 -1466 111 18 294 340 57 25 chr9 39975272 39975431 -102296013 + MIR3 SINE MIR 34 197 -11 255 265 13 53 chr9 39976258 39976409 -102295035 + GA-rich Low_complexity Low_complexity 3 147 0 2140 66 4 7 chr9 39976512 39976783 -102294661 + AluY SINE Alu 3 272 -39 450 108 0 0 chr9 39976786 39976869 -102294575 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 2422 90 0 3 chr9 39976883 39977195 -102294249 + AluSq SINE Alu 1 311 -2 697 120 5 68 chr9 39977507 39977698 -102293746 + (TCCCC)n Simple_repeat Simple_repeat 1 179 0 950 218 63 108 chr9 39977759 39978124 -102293320 - L1MDb LINE L1 -5163 1377 1039 2138 109 0 3 chr9 39978124 39978409 -102293035 - AluSq SINE Alu -29 284 1 950 218 63 108 chr9 39978409 39978525 -102292919 - L1MDb LINE L1 -5501 1039 919 376 354 135 29 chr9 39979038 39979349 -102292095 - L1MDb LINE L1 -6192 348 5 2370 69 3 16 chr9 39979457 39979762 -102291682 + AluSp SINE Alu 1 301 -12 207 318 0 0 chr9 39980097 39980182 -102291262 + T-rich Low_complexity Low_complexity 1 85 0 450 308 144 16 chr9 39980840 39981090 -102290354 - L3 LINE CR1 -1 1576 1295 2534 52 0 7 chr9 39981969 39982276 -102289168 - AluY SINE Alu -6 305 1 2291 108 0 0 chr9 39982533 39982829 -102288615 + AluSx SINE Alu 1 296 -16 3350 137 136 91 chr9 39983259 39983831 -102287613 - L1MC3 LINE L1 -15 7770 7075 300 270 0 14 chr9 39983831 39983905 -102287539 - MLT1F1 LTR MaLR -450 117 45 3350 137 136 91 chr9 39983905 39984120 -102287324 - L1MC3 LINE L1 -710 7075 6871 35 24 0 0 chr9 39984128 39984170 -102287274 + AT_rich Low_complexity Low_complexity 1 42 0 243 0 0 0 chr9 39984170 39984197 -102287247 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2155 99 3 0 chr9 39984199 39984481 -102286963 - AluSq SINE Alu -30 283 1 761 149 16 0 chr9 39984502 39984623 -102286821 - FLAM_C SINE Alu -10 123 1 192 77 0 0 chr9 39984623 39984649 -102286795 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 961 134 13 6 chr9 39984697 39984854 -102286590 - L1MC3 LINE L1 -923 6862 6705 1758 179 7 3 chr9 39984902 39985199 -102286245 - AluJb SINE Alu -14 298 1 272 265 122 0 chr9 39985237 39985335 -102286109 + MIR SINE MIR 104 213 -49 1406 192 13 45 chr9 39985491 39985803 -102285641 - AluJb SINE Alu -8 304 3 2137 69 31 17 chr9 39986090 39986379 -102285065 + AluY SINE Alu 1 293 -18 24 0 0 0 chr9 39986482 39986506 -102284938 + AT_rich Low_complexity Low_complexity 1 24 0 196 303 131 20 chr9 39986875 39986974 -102284470 - L2 LINE L2 -6 3266 3157 254 290 70 40 chr9 39987404 39987504 -102283940 + L2 LINE L2 3156 3258 -14 2341 113 0 0 chr9 39990187 39990498 -102280946 - AluSx SINE Alu -1 311 1 24 0 0 0 chr9 39991353 39991377 -102280067 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr9 39992207 39992232 -102279212 + AT_rich Low_complexity Low_complexity 1 25 0 221 359 66 50 chr9 39993356 39993537 -102277907 + L2 LINE L2 2872 3055 -217 425 139 14 0 chr9 39994363 39994435 -102277009 - AluSg/x SINE Alu -154 158 86 1345 174 5 0 chr9 39994435 39994654 -102276790 - AluJb SINE Alu -92 220 1 238 247 108 0 chr9 39994852 39994945 -102276499 - L1P LINE L1 -723 5428 5326 209 303 0 0 chr9 39995125 39995191 -102276253 - L2 LINE L2 0 3272 3207 502 335 49 33 chr9 39995255 39995500 -102275944 + MIR SINE MIR 8 256 -6 2210 70 0 14 chr9 39995795 39996119 -102275325 + AluY SINE Alu 1 320 0 1336 158 15 50 chr9 39996211 39996495 -102274949 + AluJo SINE Alu 33 307 0 227 322 82 7 chr9 39996566 39996712 -102274732 - L2 LINE L2 -223 3049 2893 186 330 22 22 chr9 39996743 39996834 -102274610 - L2 LINE L2 -498 2816 2726 1532 193 98 0 chr9 39996899 39997215 -102274229 - MER7A DNA MER2_type 0 346 2 1551 153 26 71 chr9 39997329 39997637 -102273807 + AluJb SINE Alu 5 298 -14 24 0 0 0 chr9 39997696 39997720 -102273724 + AT_rich Low_complexity Low_complexity 1 24 0 261 130 19 37 chr9 39998107 39998161 -102273283 + LTR23 LTR ERV1 1 53 -384 21 0 0 0 chr9 39998161 39998182 -102273262 + AT_rich Low_complexity Low_complexity 1 21 0 816 204 42 0 chr9 39998188 39998330 -102273114 - AluJ SINE Alu -36 276 129 60 37 0 0 chr9 39998332 39998413 -102273031 + AT_rich Low_complexity Low_complexity 1 81 0 757 169 0 0 chr9 39998424 39998548 -102272896 - AluJ SINE Alu -185 127 4 797 170 144 111 chr9 39998559 39998697 -102272747 - AluJo SINE Alu -22 290 158 2232 80 3 0 chr9 39998697 39998984 -102272460 - AluSp SINE Alu -23 290 3 797 170 144 111 chr9 39998984 39999116 -102272328 - AluJo SINE Alu -154 158 11 952 167 14 113 chr9 39999129 39999422 -102272022 + LTR23 LTR ERV1 42 305 -132 2275 61 61 0 chr9 39999422 39999716 -102271728 + AluSq SINE Alu 1 312 -1 334 186 12 93 chr9 39999760 39999846 -102271598 + AluJ/FLAM SINE Alu 7 85 -217 799 146 14 7 chr9 39999847 39999991 -102271453 + LTR23 LTR ERV1 293 437 0 191 271 57 14 chr9 40001324 40001394 -102270050 + MIR3 SINE MIR 125 197 -11 211 297 14 0 chr9 40001429 40001503 -102269941 + MIR3 SINE MIR 10 84 -124 265 267 44 33 chr9 40001609 40001699 -102269745 + MIR3 SINE MIR 111 201 -7 2129 104 3 0 chr9 40002884 40003181 -102268263 + AluSg SINE Alu 1 298 -12 334 353 38 23 chr9 40003208 40003341 -102268103 + MIR3 SINE MIR 31 165 -43 426 39 0 0 chr9 40003417 40003469 -102267975 + (TG)n Simple_repeat Simple_repeat 2 53 0 224 339 28 28 chr9 40004665 40004774 -102266670 - L2 LINE L2 0 3272 3164 1818 138 14 0 chr9 40005095 40005371 -102266073 - AluSx SINE Alu -26 286 7 1621 181 0 31 chr9 40005384 40005677 -102265767 - AluJo SINE Alu -20 292 9 2473 63 7 0 chr9 40006214 40006515 -102264929 + AluY SINE Alu 1 303 -8 2301 98 3 3 chr9 40006519 40006826 -102264618 + AluSx SINE Alu 1 307 -5 420 235 121 6 chr9 40007527 40007693 -102263751 - L1MC5 LINE L1 -58 7903 7719 919 152 0 0 chr9 40007764 40007896 -102263548 + MER2 DNA MER2_type 4 135 -210 1145 87 54 27 chr9 40007903 40008012 -102263432 + MER30 DNA MER1_type 3 120 -110 2204 83 10 14 chr9 40008012 40008302 -102263142 + AluSg SINE Alu 1 289 -21 1145 87 54 27 chr9 40008302 40008376 -102263068 + MER30 DNA MER1_type 120 191 -39 490 160 76 25 chr9 40008389 40008508 -102262936 + MER2 DNA MER2_type 136 260 -85 1111 178 0 0 chr9 40008527 40008712 -102262732 - AluSq SINE Alu -9 304 120 34 0 0 0 chr9 40008712 40008746 -102262698 + AT_rich Low_complexity Low_complexity 1 34 0 2303 101 0 0 chr9 40008746 40009044 -102262400 - AluSx SINE Alu -14 298 1 944 123 0 0 chr9 40009049 40009179 -102262265 - AluSq SINE Alu -183 130 1 807 212 103 35 chr9 40009252 40009563 -102261881 - L1MC5 LINE L1 -320 7641 7310 2366 100 0 3 chr9 40009870 40010181 -102261263 - AluSp SINE Alu -3 310 1 357 191 11 11 chr9 40010182 40010271 -102261173 - L1MC5 LINE L1 -1876 5932 5844 203 167 42 42 chr9 40010346 40010394 -102261050 + L2 LINE L2 3266 3313 0 23 33 0 0 chr9 40010436 40010466 -102260978 + AT_rich Low_complexity Low_complexity 1 30 0 194 0 0 37 chr9 40011552 40011579 -102259865 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1323 141 31 86 chr9 40011640 40011930 -102259514 - AluJb SINE Alu -38 274 1 638 161 45 0 chr9 40011941 40012079 -102259365 - FLAM_C SINE Alu 0 143 1 21 0 0 0 chr9 40013850 40013871 -102257573 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 40013985 40014006 -102257438 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 40016801 40016837 -102254607 + AT_rich Low_complexity Low_complexity 1 36 0 22 88 0 0 chr9 40018984 40019041 -102252403 + AT_rich Low_complexity Low_complexity 1 57 0 23 54 0 0 chr9 40019330 40019367 -102252077 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr9 40022009 40022034 -102249410 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 40022280 40022309 -102249135 + AT_rich Low_complexity Low_complexity 1 29 0 283 312 72 24 chr9 40023344 40023469 -102247975 - L2 LINE L2 0 3272 3142 2197 167 21 12 chr9 40025817 40026236 -102245208 + L1M2 LINE L1 5299 5721 -591 21 36 0 0 chr9 40027549 40027577 -102243867 + AT_rich Low_complexity Low_complexity 1 28 0 714 71 10 0 chr9 40028354 40028452 -102242992 + HY3 scRNA scRNA 2 100 -1 1708 149 0 28 chr9 40028457 40028739 -102242705 + AluJo SINE Alu 14 287 -25 2161 117 3 0 chr9 40028821 40029121 -102242323 + AluSx SINE Alu 1 301 -11 181 312 0 75 chr9 40029122 40029215 -102242229 - MIR3 SINE MIR -28 180 95 513 179 0 0 chr9 40029423 40029507 -102241937 + AluJb SINE Alu 42 125 -187 1409 217 88 45 chr9 40029772 40030306 -102241138 - L1ME1 LINE L1 -26 6209 5653 928 131 0 8 chr9 40030318 40030448 -102240996 + AluSq/x SINE Alu 1 129 -184 1643 106 0 0 chr9 40030448 40030656 -102240788 + AluSc SINE Alu 1 208 -101 1196 130 12 0 chr9 40030789 40030958 -102240486 + AluSg/x SINE Alu 142 312 0 541 226 99 13 chr9 40030965 40031674 -102239770 - L1ME1 LINE L1 -593 5642 4725 1963 128 0 34 chr9 40031702 40031984 -102239460 + AluSx SINE Alu 1 274 -38 602 26 0 13 chr9 40031984 40032061 -102239383 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 1963 128 0 34 chr9 40032061 40032074 -102239370 + AluSx SINE Alu 274 286 -26 232 91 45 0 chr9 40032098 40032142 -102239302 + A-rich Low_complexity Low_complexity 3 48 0 1163 235 61 0 chr9 40032142 40032406 -102239038 - AluJb SINE Alu -30 282 3 1784 230 133 26 chr9 40032407 40033212 -102238232 - L1ME1 LINE L1 -1483 4732 3842 1668 103 49 0 chr9 40033212 40033475 -102237969 - MER75 DNA T2_type 0 514 239 1776 231 82 40 chr9 40033489 40033657 -102237787 - L1ME1 LINE L1 -2652 3563 3404 2253 73 0 7 chr9 40033657 40033944 -102237500 + AluSg SINE Alu 1 285 -25 1776 231 82 40 chr9 40033944 40034533 -102236911 - L1ME1 LINE L1 -2811 3404 2774 2845 256 70 30 chr9 40034616 40034813 -102236631 - L1ME1 LINE L1 -5148 1248 1060 558 167 167 0 chr9 40034813 40034927 -102236517 - FLAM_C SINE Alu 0 133 1 2845 256 70 30 chr9 40034927 40035896 -102235548 - L1ME1 LINE L1 -5336 1060 35 847 161 0 0 chr9 40036159 40036283 -102235161 + FLAM_C SINE Alu 1 124 -19 314 274 80 18 chr9 40036319 40036432 -102235012 - L2 LINE L2 -16 3256 3137 23 0 0 0 chr9 40036490 40036513 -102234931 + AT_rich Low_complexity Low_complexity 1 23 0 1567 185 22 29 chr9 40037323 40037637 -102233807 + AluJo SINE Alu 1 312 0 1401 155 66 12 chr9 40038963 40039221 -102232223 - AluJo SINE Alu -1 311 40 21 36 0 0 chr9 40041349 40041377 -102230067 + AT_rich Low_complexity Low_complexity 1 28 0 251 339 102 0 chr9 40041446 40041573 -102229871 + MIR SINE MIR 56 195 -67 2069 115 13 26 chr9 40041573 40041878 -102229566 + AluSx SINE Alu 1 301 -11 239 174 65 0 chr9 40041887 40041933 -102229511 - L1MC/D LINE L1 -669 5573 5525 1889 113 84 0 chr9 40042398 40042673 -102228771 + AluSx SINE Alu 1 298 -14 1232 175 21 117 chr9 40042965 40043291 -102228153 + AluYb8 SINE Alu 1 295 -23 23 33 0 0 chr9 40043415 40043445 -102227999 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 40043598 40043625 -102227819 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2229 70 14 0 chr9 40043627 40043914 -102227530 - AluY SINE Alu -20 291 1 233 281 16 8 chr9 40044081 40044202 -102227242 + (TA)n Simple_repeat Simple_repeat 2 123 0 189 206 0 0 chr9 40044494 40044528 -102226916 - MER5B DNA MER1_type -50 128 95 1973 124 18 0 chr9 40044601 40044911 -102226533 + AluSg SINE Alu 1 315 0 2499 142 78 8 chr9 40045180 40045665 -102225779 + L1MC3 LINE L1 7244 7762 -23 275 205 18 27 chr9 40045951 40046063 -102225381 + GA-rich Low_complexity Low_complexity 2 112 0 180 0 0 0 chr9 40046731 40046751 -102224693 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 333 200 0 43 chr9 40047599 40047669 -102223775 + L2 LINE L2 3246 3312 -1 23 33 0 0 chr9 40048607 40048637 -102222807 + AT_rich Low_complexity Low_complexity 1 30 0 1693 189 81 10 chr9 40048961 40049379 -102222065 + L1MB7 LINE L1 5694 6141 -43 30 0 0 0 chr9 40049380 40049410 -102222034 + AT_rich Low_complexity Low_complexity 1 30 0 762 157 9 0 chr9 40049410 40049525 -102221919 - FLAM_C SINE Alu -17 116 1 2075 120 3 46 chr9 40049882 40050207 -102221237 - AluSx SINE Alu -1 311 1 748 232 7 0 chr9 40050382 40050533 -102220911 + FAM SINE Alu 1 152 -33 255 192 41 14 chr9 40051089 40051162 -102220282 + MER116 DNA Mariner 6 80 0 583 249 135 21 chr9 40051237 40051430 -102220014 - MIR SINE MIR -42 220 6 297 0 0 0 chr9 40052229 40052262 -102219182 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1427 195 90 44 chr9 40052993 40053428 -102218016 - MLT1C LTR MaLR 0 467 13 243 0 0 0 chr9 40053464 40053491 -102217953 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr9 40053739 40053760 -102217684 + AT_rich Low_complexity Low_complexity 1 21 0 2220 136 3 12 chr9 40054752 40055090 -102216354 - MER1B DNA MER1_type -1 336 2 463 177 73 0 chr9 40055310 40055406 -102216038 + MER2 DNA MER2_type 243 345 0 321 178 39 132 chr9 40055548 40055677 -102215767 - L1MDa LINE L1 -4940 1600 1484 508 152 0 20 chr9 40055678 40055777 -102215667 - AluJ/FRAM SINE Alu 0 312 216 1265 181 0 44 chr9 40055877 40056126 -102215318 + AluJo SINE Alu 75 312 0 204 301 21 48 chr9 40056239 40056474 -102214970 - L2 LINE L2 -270 3002 2726 1808 165 58 0 chr9 40056539 40056867 -102214577 - MER7A DNA MER2_type 0 346 2 246 62 0 0 chr9 40056925 40056957 -102214487 + (T)n Simple_repeat Simple_repeat 1 32 0 1664 169 13 35 chr9 40056995 40057308 -102214136 + AluJb SINE Alu 1 306 -6 333 0 0 0 chr9 40057308 40057345 -102214099 + (TA)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr9 40057365 40057389 -102214055 + AT_rich Low_complexity Low_complexity 1 24 0 884 110 0 0 chr9 40057958 40058076 -102213368 - FLAM_C SINE Alu -15 118 1 809 207 37 24 chr9 40058081 40058245 -102213199 - AluJ SINE Alu -18 294 129 49 32 0 0 chr9 40058245 40058308 -102213136 + AT_rich Low_complexity Low_complexity 1 63 0 311 227 0 0 chr9 40058317 40058383 -102213061 - AluJo SINE Alu -2 300 235 667 242 0 25 chr9 40058383 40058540 -102212904 - AluJo SINE Alu -159 153 1 992 176 50 38 chr9 40058540 40058801 -102212643 + LTR23 LTR ERV1 42 305 -132 463 168 30 50 chr9 40058801 40058902 -102212542 + AluJ/FLAM SINE Alu 1 99 -213 679 123 34 41 chr9 40058907 40059053 -102212391 + LTR23 LTR ERV1 293 437 0 276 338 61 20 chr9 40060498 40060646 -102210798 + MIR3 SINE MIR 31 184 -24 257 263 25 38 chr9 40060654 40060734 -102210710 + MIR3 SINE MIR 123 201 -7 2325 59 3 3 chr9 40061473 40061762 -102209682 + AluSp SINE Alu 1 289 -24 21 0 0 0 chr9 40062192 40062213 -102209231 + AT_rich Low_complexity Low_complexity 1 21 0 363 349 30 8 chr9 40062223 40062355 -102209089 + MIR3 SINE MIR 31 165 -43 268 369 8 76 chr9 40063636 40063872 -102207572 - L2 LINE L2 0 3272 3053 747 147 42 14 chr9 40064055 40064198 -102207246 - FRAM SINE Alu -11 165 19 818 185 115 20 chr9 40064740 40064940 -102206504 - MER58A DNA MER1_type -2 222 4 202 366 74 14 chr9 40065978 40066194 -102205250 + L2 LINE L2 2157 2385 -929 305 207 126 46 chr9 40068051 40068138 -102203306 - L2 LINE L2 -10 3262 3169 511 200 8 46 chr9 40068201 40068331 -102203113 - FLAM_A SINE Alu -1 141 17 240 267 12 0 chr9 40069291 40069377 -102202067 - L1MC5 LINE L1 -58 7903 7817 1601 151 60 10 chr9 40069389 40069688 -102201756 + MER2 DNA MER2_type 1 314 -31 324 0 0 0 chr9 40069702 40069738 -102201706 + (TG)n Simple_repeat Simple_repeat 1 36 0 614 197 163 34 chr9 40069790 40070115 -102201329 - L1MC5 LINE L1 -285 7676 7310 2290 81 0 3 chr9 40070433 40070766 -102200678 - AluSq SINE Alu 0 332 1 2477 69 0 0 chr9 40070845 40071136 -102200308 - AluSg SINE Alu -19 291 1 2119 122 0 29 chr9 40071291 40071603 -102199841 - AluSx SINE Alu -9 303 1 979 194 75 20 chr9 40072529 40072730 -102198714 - AluJb SINE Alu 0 312 101 370 302 8 31 chr9 40072776 40072905 -102198539 - MIR3 SINE MIR -26 182 57 598 251 82 43 chr9 40072934 40073141 -102198303 - MIR SINE MIR -36 226 12 34 0 0 0 chr9 40073596 40073630 -102197814 + AT_rich Low_complexity Low_complexity 1 34 0 1428 123 5 0 chr9 40073630 40073834 -102197610 - AluSg/x SINE Alu -22 290 86 499 318 80 4 chr9 40074286 40074560 -102196884 - L1ME LINE L1 -303 5818 5524 326 243 75 37 chr9 40074743 40074850 -102196594 - MIR SINE MIR -95 167 57 307 348 28 0 chr9 40075063 40075204 -102196240 - MIR3 SINE MIR -4 204 60 1767 155 23 19 chr9 40075232 40075542 -102195902 + AluJb SINE Alu 1 311 -1 1834 130 12 78 chr9 40075613 40075944 -102195500 - AluJb SINE Alu -3 309 1 192 77 0 0 chr9 40076220 40076246 -102195198 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 195 411 0 0 chr9 40076415 40076471 -102194973 - L2 LINE L2 -88 3184 3129 1790 150 41 7 chr9 40076523 40076816 -102194628 + AluSx SINE Alu 1 303 -9 218 109 18 109 chr9 40077609 40077664 -102193780 + MIR SINE MIR 86 135 -73 1963 110 43 3 chr9 40077769 40078051 -102193393 + AluSg SINE Alu 1 293 -17 180 231 154 96 chr9 40078096 40078200 -102193244 - MER5A DNA MER1_type -61 128 19 389 311 57 11 chr9 40078295 40078472 -102192972 + MIR3 SINE MIR 9 193 -15 233 177 83 146 chr9 40079037 40079100 -102192344 - L1ME3A LINE L1 -218 5952 5895 1990 139 7 7 chr9 40079100 40079409 -102192035 - AluSx SINE Alu -3 309 1 233 177 83 146 chr9 40079409 40079441 -102192003 - L1ME3A LINE L1 -275 5895 5863 1723 185 0 0 chr9 40079641 40079933 -102191511 + AluJb SINE Alu 1 292 -20 256 250 0 0 chr9 40080109 40080165 -102191279 + MIR SINE MIR 97 152 -56 592 228 21 52 chr9 40080539 40080732 -102190712 - MIR3 SINE MIR -6 202 16 381 277 46 39 chr9 40081007 40081137 -102190307 + L2 LINE L2 3142 3272 0 204 286 0 20 chr9 40081701 40081748 -102189696 + MIR SINE MIR 26 71 -137 1071 230 7 68 chr9 40081748 40081941 -102189503 + MIR SINE MIR 2 174 -88 956 206 0 0 chr9 40081941 40082106 -102189338 + FRAM SINE Alu 1 165 -1 1071 230 7 68 chr9 40082106 40082190 -102189254 + MIR SINE MIR 174 262 0 500 283 73 17 chr9 40082172 40082349 -102189095 + L2 LINE L2 2908 3094 -219 * 2149 97 7 32 chr9 40083047 40083357 -102188087 + AluSq SINE Alu 1 302 -11 599 200 8 8 chr9 40083511 40083636 -102187808 + MER63 DNA MER1_type 745 869 -193 1546 174 19 0 chr9 40083644 40083908 -102187536 + AluJo SINE Alu 1 269 -43 216 182 0 0 chr9 40083909 40083953 -102187491 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 497 132 0 0 chr9 40084016 40084084 -102187360 - AluSc SINE Alu -112 197 130 613 217 0 0 chr9 40084084 40084204 -102187240 + MER63 DNA MER1_type 941 1060 0 270 327 59 68 chr9 40084226 40084657 -102186787 + L2 LINE L2 2596 3017 -255 2102 114 0 10 chr9 40084720 40085009 -102186435 - AluSq SINE Alu -27 286 1 454 305 29 29 chr9 40085685 40085859 -102185585 - MIR3 SINE MIR -3 205 32 2024 124 0 0 chr9 40085923 40086240 -102185204 - AluSg SINE Alu 0 317 1 1734 184 96 25 chr9 40086334 40086454 -102184990 + MLT1C LTR MaLR 1 111 -356 2064 144 0 0 chr9 40086454 40086752 -102184692 - AluSx SINE Alu -14 298 1 1734 184 96 25 chr9 40086752 40087067 -102184377 + MLT1C LTR MaLR 111 467 0 986 269 123 19 chr9 40087605 40087980 -102183464 - LTR33 LTR ERVL -6 515 102 1479 199 30 149 chr9 40087983 40088652 -102182792 + L1 LINE L1 4031 4619 -1527 3616 205 40 19 chr9 40088655 40089469 -102181975 + L1MB5 LINE L1 4421 5216 -958 1916 168 0 0 chr9 40089469 40089772 -102181672 + AluJb SINE Alu 1 303 -9 3616 205 40 19 chr9 40089772 40090321 -102181123 + L1MB5 LINE L1 5216 5826 -348 1509 206 31 0 chr9 40090321 40090607 -102180837 + AluJo SINE Alu 11 305 -7 3616 205 40 19 chr9 40090607 40090635 -102180809 + L1MB5 LINE L1 5826 5852 -322 292 256 49 12 chr9 40090735 40090817 -102180627 + L2 LINE L2 2809 2893 -420 27 0 0 0 chr9 40090817 40090844 -102180600 + AT_rich Low_complexity Low_complexity 1 27 0 2392 78 0 0 chr9 40090896 40091189 -102180255 - AluY SINE Alu -18 293 1 508 308 142 19 chr9 40091206 40091524 -102179920 + L2 LINE L2 2911 3267 -46 204 213 0 0 chr9 40091828 40091889 -102179555 + T-rich Low_complexity Low_complexity 1 61 0 2596 52 3 0 chr9 40093596 40093906 -102177538 + AluY SINE Alu 1 311 0 860 171 88 78 chr9 40093934 40094139 -102177305 + MER20 DNA MER1_type 13 219 0 21 57 0 0 chr9 40094159 40094194 -102177250 + AT_rich Low_complexity Low_complexity 1 35 0 249 83 0 0 chr9 40095845 40095881 -102175563 + (TG)n Simple_repeat Simple_repeat 2 37 0 29 78 0 0 chr9 40096465 40096529 -102174915 + AT_rich Low_complexity Low_complexity 1 64 0 2151 106 3 0 chr9 40098242 40098549 -102172895 + AluSq SINE Alu 1 308 0 21 36 0 0 chr9 40098755 40098783 -102172661 + AT_rich Low_complexity Low_complexity 1 28 0 2255 91 7 7 chr9 40100374 40100672 -102170772 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 40100792 40100813 -102170631 + (T)n Simple_repeat Simple_repeat 1 21 0 613 146 0 39 chr9 40100826 40100929 -102170515 + AluSc SINE Alu 194 292 -17 782 228 97 10 chr9 40101028 40101234 -102170210 + MER58A DNA MER1_type 1 224 0 2234 112 0 3 chr9 40102108 40102403 -102169041 + AluSx SINE Alu 1 294 -18 185 250 125 0 chr9 40103721 40103777 -102167667 - L2 LINE L2 0 3272 3210 335 269 86 21 chr9 40103797 40103983 -102167461 + L1MB4 LINE L1 4382 4579 -1567 450 0 0 0 chr9 40104178 40104228 -102167216 + (TG)n Simple_repeat Simple_repeat 2 51 0 219 139 0 0 chr9 40104844 40104880 -102166564 + (TATG)n Simple_repeat Simple_repeat 2 37 0 237 186 0 0 chr9 40104904 40104947 -102166497 + L1MB4 LINE L1 5561 5603 -518 349 137 0 0 chr9 40104951 40105002 -102166442 + MER66A LTR ERV1 287 337 -141 2021 202 28 12 chr9 40105025 40105520 -102165924 + L1MB4 LINE L1 5676 6178 -2 910 274 58 66 chr9 40106271 40106757 -102164687 + L1ME1 LINE L1 35 516 -5880 2286 234 97 42 chr9 40106956 40108599 -102162845 + L1ME1 LINE L1 3312 4863 -1372 2333 70 7 3 chr9 40108599 40108897 -102162547 + AluY SINE Alu 1 299 -12 2286 234 97 42 chr9 40108897 40109643 -102161801 + L1ME1 LINE L1 4863 5935 -300 1802 145 36 10 chr9 40109643 40109947 -102161497 - AluSx SINE Alu 0 312 1 2286 234 97 42 chr9 40109947 40110227 -102161217 + L1ME1 LINE L1 5935 6198 -37 1311 181 86 38 chr9 40110227 40110519 -102160925 - AluJb SINE Alu -6 306 1 2171 111 7 3 chr9 40110686 40110984 -102160460 - AluSx SINE Alu -12 300 2 5446 162 99 5 chr9 40111176 40112274 -102159170 - Tigger3b DNA MER2_type -1 1230 29 27 0 0 0 chr9 40112436 40112463 -102158981 + AT_rich Low_complexity Low_complexity 1 27 0 281 229 195 34 chr9 40112478 40112596 -102158848 + L2 LINE L2 3177 3313 0 1784 140 6 40 chr9 40112774 40113096 -102158348 - AluSx SINE Alu -1 311 1 236 222 37 19 chr9 40114158 40114212 -102157232 + MER5B DNA MER1_type 4 58 -120 181 288 27 0 chr9 40114289 40114362 -102157082 + MER5B DNA MER1_type 98 172 -6 811 190 117 6 chr9 40114362 40114541 -102156903 + MER58 DNA MER1_type 1 199 -142 651 246 0 0 chr9 40114956 40115094 -102156350 - Tigger5 DNA MER2_type 0 2323 2186 2058 106 0 48 chr9 40115707 40116019 -102155425 - AluSx SINE Alu -15 297 1 317 311 135 46 chr9 40116115 40116375 -102155069 - MLT1K LTR MaLR -163 425 143 26 30 0 0 chr9 40116570 40116603 -102154841 + AT_rich Low_complexity Low_complexity 1 33 0 2355 148 22 61 chr9 40116789 40117296 -102154148 - L1MA6 LINE L1 0 6300 5814 380 232 80 14 chr9 40117307 40117445 -102153999 + CT-rich Low_complexity Low_complexity 5 151 0 2142 116 7 0 chr9 40117449 40117743 -102153701 - AluSc SINE Alu -13 296 1 2223 126 42 5 chr9 40117744 40118124 -102153320 - L1MA6 LINE L1 -475 5825 5432 23 0 0 0 chr9 40118188 40118211 -102153233 + AT_rich Low_complexity Low_complexity 1 23 0 2223 58 0 11 chr9 40118274 40118549 -102152895 - AluY SINE Alu -39 272 1 21 36 0 0 chr9 40120730 40120758 -102150686 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 40122177 40122199 -102149245 + AT_rich Low_complexity Low_complexity 1 22 0 28 95 0 0 chr9 40122792 40122876 -102148568 + AT_rich Low_complexity Low_complexity 1 84 0 201 147 0 0 chr9 40126100 40126134 -102145310 + (A)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr9 40126286 40126321 -102145123 + AT_rich Low_complexity Low_complexity 1 35 0 203 195 24 24 chr9 40127569 40127610 -102143834 + L2 LINE L2 3032 3072 -200 208 326 0 42 chr9 40127737 40127832 -102143612 - L2 LINE L2 -430 2884 2794 435 298 42 46 chr9 40127997 40128235 -102143209 - L2 LINE L2 -882 2432 2196 324 149 0 15 chr9 40128484 40128551 -102142893 - L1MA8 LINE L1 -3 6288 6223 340 241 98 54 chr9 40128610 40128722 -102142722 - MER8 DNA MER2_type -122 117 1 1670 182 26 2 chr9 40128722 40129064 -102142380 - L1MA8 LINE L1 -28 6143 5871 1435 179 57 37 chr9 40129480 40129797 -102141647 + AluJo SINE Alu 1 323 0 189 369 0 36 chr9 40130258 40130342 -102141102 + L3 LINE CR1 1478 1558 -19 1952 99 68 10 chr9 40131312 40131604 -102139840 - AluSc SINE Alu 0 309 1 422 341 115 10 chr9 40131818 40132026 -102139418 + MIR SINE MIR 2 231 -31 321 267 0 27 chr9 40132059 40132134 -102139310 - MER81 DNA DNA 0 114 42 2209 125 3 3 chr9 40132146 40132457 -102138987 - AluSq SINE Alu -2 311 1 23 33 0 0 chr9 40133025 40133055 -102138389 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr9 40135727 40135758 -102135686 + AT_rich Low_complexity Low_complexity 1 31 0 2166 69 0 11 chr9 40137154 40137429 -102134015 + AluY SINE Alu 1 272 -39 22 0 0 0 chr9 40137493 40137515 -102133929 + AT_rich Low_complexity Low_complexity 1 22 0 664 183 44 0 chr9 40137579 40137716 -102133728 + L1M2 LINE L1 5432 5574 -726 328 188 12 12 chr9 40137878 40137958 -102133486 - HAL1 LINE L1 -296 2211 2132 1990 155 3 0 chr9 40138001 40138304 -102133140 - AluSx SINE Alu -8 304 1 229 200 15 31 chr9 40138305 40138370 -102133074 - HAL1 LINE L1 -464 2043 1980 * 572 262 14 0 chr9 40138369 40138514 -102132930 - HAL1 LINE L1 -939 1568 1422 741 241 0 21 chr9 40138574 40138765 -102132679 - AluJo SINE Alu -14 298 112 1109 127 0 0 chr9 40138928 40139094 -102132350 + AluSg/x SINE Alu 144 309 -1 198 91 0 0 chr9 40139103 40139136 -102132308 + (TA)n Simple_repeat Simple_repeat 1 33 0 676 191 211 10 chr9 40140836 40141030 -102130414 - MER46A DNA MER2_type -3 233 1 2360 174 193 25 chr9 40141161 40141763 -102129681 - MER44D DNA MER2_type -2 703 1 1355 233 38 27 chr9 40142433 40142798 -102128646 + Charlie1a DNA MER1_type 3 371 -1084 2037 187 150 35 chr9 40142814 40143067 -102128377 + Charlie1a DNA MER1_type 793 1016 -1745 2553 130 142 6 chr9 40143067 40143561 -102127883 - MER34B LTR ERV1 -2 563 3 2037 187 150 35 chr9 40143561 40143901 -102127543 + Charlie1a DNA MER1_type 1016 1454 -1 1077 152 21 26 chr9 40143904 40144095 -102127349 + MSTB LTR MaLR 221 410 -16 255 285 0 114 chr9 40144311 40144434 -102127010 + MIR SINE MIR 86 194 -68 229 366 42 7 chr9 40144493 40144622 -102126822 - L2 LINE L2 -731 2583 2447 1933 116 29 32 chr9 40144622 40144933 -102126511 + AluJb SINE Alu 1 310 -2 229 366 42 7 chr9 40144933 40144945 -102126499 - L2 LINE L2 -867 2447 2437 4726 208 114 39 chr9 40145256 40146727 -102124717 - MER45R DNA AcHobo 0 1581 1 242 224 342 0 chr9 40150259 40150411 -102121033 + MIR SINE MIR 47 250 -12 21 0 0 0 chr9 40150449 40150470 -102120974 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 40150778 40150801 -102120643 + AT_rich Low_complexity Low_complexity 1 23 0 1852 185 0 0 chr9 40152739 40153031 -102118413 + AluJo SINE Alu 1 292 -20 1371 155 91 38 chr9 40153568 40153707 -102117737 - AluJb SINE Alu -33 279 149 2590 55 0 0 chr9 40153707 40154015 -102117429 - AluY SINE Alu -3 308 1 1371 155 91 38 chr9 40154015 40154140 -102117304 - AluJb SINE Alu -163 149 1 320 276 86 43 chr9 40154242 40154358 -102117086 + L2 LINE L2 3143 3263 -9 2497 60 0 0 chr9 40154575 40154873 -102116571 - AluY SINE Alu -13 298 1 532 324 84 44 chr9 40155086 40155528 -102115916 - L2 LINE L2 -230 3083 2606 1670 165 22 4 chr9 40155528 40155795 -102115649 + AluJb SINE Alu 40 311 -1 532 324 84 44 chr9 40155795 40155965 -102115479 - L2 LINE L2 -707 2606 2444 854 154 256 38 chr9 40156141 40156407 -102115037 + MER33 DNA MER1_type 1 324 0 2217 100 30 0 chr9 40156559 40156858 -102114586 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr9 40156953 40156975 -102114469 + AT_rich Low_complexity Low_complexity 1 22 0 1467 184 124 121 chr9 40157089 40157735 -102113709 + L1MC5 LINE L1 7065 7716 -245 2013 135 0 0 chr9 40157735 40158023 -102113421 - AluSx SINE Alu -24 288 1 1467 184 124 121 chr9 40158023 40158222 -102113222 + L1MC5 LINE L1 7716 7913 -48 251 204 41 0 chr9 40158569 40158618 -102112826 - L1ME3A LINE L1 -75 6095 6045 228 67 0 0 chr9 40158645 40158675 -102112769 + (A)n Simple_repeat Simple_repeat 1 30 0 691 251 17 11 chr9 40158948 40159167 -102112277 - L1ME3 LINE L1 -315 5855 5656 939 174 87 5 chr9 40159174 40159369 -102112075 + MER58A DNA MER1_type 1 211 -13 2504 70 0 0 chr9 40159374 40159675 -102111769 + AluY SINE Alu 1 301 -10 518 249 46 24 chr9 40159850 40160123 -102111321 - L1ME3 LINE L1 -747 5399 5164 295 174 0 0 chr9 40160186 40160232 -102111212 - MER75 DNA T2_type 0 514 469 2280 122 3 0 chr9 40160480 40160791 -102110653 - AluSx SINE Alu 0 312 1 489 296 160 21 chr9 40160796 40161227 -102110217 - L1ME3 LINE L1 -953 5193 4697 981 259 114 42 chr9 40161584 40161786 -102109658 - L1ME LINE L1 -344 5818 5632 2297 98 0 25 chr9 40161786 40162103 -102109341 - AluSq SINE Alu -4 309 1 981 259 114 42 chr9 40162103 40162556 -102108888 - L1ME LINE L1 -530 5632 5128 489 283 133 17 chr9 40162556 40162736 -102108708 + MIR SINE MIR 56 256 -6 234 286 78 0 chr9 40163342 40163419 -102108025 + L1ME LINE L1 347 429 -5987 587 196 0 9 chr9 40163511 40163623 -102107821 + FLAM_C SINE Alu 1 111 -32 211 0 88 0 chr9 40163633 40163667 -102107777 + A-rich Low_complexity Low_complexity 3 39 0 643 329 118 0 chr9 40163667 40163956 -102107488 + L1ME LINE L1 443 765 -5651 933 211 132 103 chr9 40163964 40164163 -102107281 + L1ME LINE L1 902 1094 -5332 210 37 0 0 chr9 40164163 40164190 -102107254 + (TG)n Simple_repeat Simple_repeat 2 28 0 933 211 132 103 chr9 40164190 40164218 -102107226 + L1ME LINE L1 1094 1120 -5306 700 266 0 6 chr9 40164218 40164376 -102107068 - FAM SINE Alu -18 157 1 933 211 132 103 chr9 40164376 40165038 -102106406 + L1ME LINE L1 1120 1829 -4597 663 144 68 25 chr9 40165056 40165174 -102106270 + AluSq/x SINE Alu 3 125 -188 275 270 109 67 chr9 40165190 40165687 -102105757 + L1ME LINE L1 1781 2365 -4061 800 180 0 0 chr9 40165729 40165851 -102105593 + FLAM_C SINE Alu 1 122 -21 23 0 0 0 chr9 40165851 40165874 -102105570 + AT_rich Low_complexity Low_complexity 1 23 0 1097 214 108 77 chr9 40165942 40166027 -102105417 + L1ME LINE L1 2599 2680 -3746 2118 83 47 0 chr9 40166027 40166304 -102105140 + AluY SINE Alu 3 292 -19 1097 214 108 77 chr9 40166304 40166727 -102104717 + L1ME LINE L1 2680 3123 -3303 405 156 52 42 chr9 40166727 40166823 -102104621 + L1ME LINE L1 3067 3163 -3263 576 227 0 0 chr9 40166913 40167023 -102104421 - AluJ SINE Alu -4 308 199 232 249 70 49 chr9 40167023 40167208 -102104236 + L1MEc LINE L1 1823 2011 -4385 1362 136 0 0 chr9 40167274 40167465 -102103979 - AluJ SINE Alu -118 194 4 746 132 62 7 chr9 40168312 40168456 -102102988 + L1MB2 LINE L1 6013 6164 -7 2425 75 0 7 chr9 40168474 40168779 -102102665 + AluY SINE Alu 1 303 -8 269 185 74 13 chr9 40168786 40168978 -102102466 + AluJo SINE Alu 48 290 -12 198 0 0 0 chr9 40169025 40169047 -102102397 + (T)n Simple_repeat Simple_repeat 1 22 0 389 290 69 8 chr9 40171924 40172055 -102099389 - L2 LINE L2 0 3313 3175 401 273 45 80 chr9 40172331 40172532 -102098912 + MIR SINE MIR 5 196 -66 1700 174 47 3 chr9 40172532 40172831 -102098613 + AluJb SINE Alu 1 312 0 401 273 45 80 chr9 40172831 40172893 -102098551 + MIR SINE MIR 196 259 -3 1805 164 3 7 chr9 40173763 40174061 -102097383 + AluJo SINE Alu 1 297 -15 203 171 0 0 chr9 40174075 40174116 -102097328 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 3033 277 106 23 chr9 40174275 40174906 -102096538 + L2 LINE L2 1759 2337 -976 2331 93 0 3 chr9 40174906 40175216 -102096228 - AluSg SINE Alu -1 309 1 3033 277 106 23 chr9 40175216 40176010 -102095434 + L2 LINE L2 2337 3312 -1 4486 191 42 29 chr9 40176051 40176141 -102095303 + Looper DNA T2_type 1 88 -1470 1646 190 0 14 chr9 40176141 40176436 -102095008 + AluJb SINE Alu 1 291 -21 4486 191 42 29 chr9 40176436 40177434 -102094010 + Looper DNA T2_type 88 1103 -455 2301 81 6 28 chr9 40177440 40177760 -102093684 - AluSp SINE Alu 0 313 1 1003 181 167 0 chr9 40177785 40178061 -102093383 + Looper DNA T2_type 1230 1551 -7 571 239 227 27 chr9 40178164 40178569 -102092875 + HAL1 LINE L1 2018 2503 -4 478 134 0 24 chr9 40181788 40181870 -102089574 + MADE1 DNA Mariner 1 80 0 1014 204 83 45 chr9 40182492 40182647 -102088797 - AluJo SINE Alu -38 274 103 423 0 0 0 chr9 40182647 40182694 -102088750 + (TG)n Simple_repeat Simple_repeat 2 48 0 1014 204 83 45 chr9 40182694 40182802 -102088642 - AluJo SINE Alu -209 103 1 226 385 125 0 chr9 40183056 40183160 -102088284 + L2 LINE L2 3147 3263 -9 616 148 10 0 chr9 40184047 40184148 -102087296 - MSTA LTR MaLR -326 102 1 1606 225 28 5 chr9 40184152 40184547 -102086897 + L1ME2 LINE L1 5750 6153 -11 371 269 117 21 chr9 40185122 40185267 -102086177 - MIR3 SINE MIR -6 202 44 1249 206 13 8 chr9 40185620 40185858 -102085586 - MER8 DNA MER2_type 0 239 1 1671 166 7 10 chr9 40187090 40187380 -102084064 + AluJb SINE Alu 9 297 -15 537 262 64 42 chr9 40187647 40187847 -102083597 - MIR SINE MIR -30 232 32 2344 90 3 3 chr9 40188909 40189221 -102082223 + AluSq SINE Alu 1 312 -1 2381 88 3 0 chr9 40189422 40189729 -102081715 - AluSp SINE Alu -5 308 1 2225 93 3 13 chr9 40190138 40190438 -102081006 + AluY SINE Alu 1 297 -14 489 316 66 13 chr9 40190536 40190688 -102080756 + MIR3 SINE MIR 28 187 -21 181 352 0 0 chr9 40190694 40190748 -102080696 - L3 LINE CR1 -147 1430 1377 364 320 34 6 chr9 40190891 40191069 -102080375 - L3 LINE CR1 -291 1286 1104 2132 98 0 3 chr9 40191824 40192135 -102079309 - AluSx SINE Alu 0 310 1 2356 87 3 0 chr9 40192220 40192529 -102078915 - AluSg SINE Alu 0 310 1 2230 110 10 3 chr9 40192542 40192850 -102078594 - AluSx SINE Alu 0 312 3 582 265 96 26 chr9 40193658 40193888 -102077556 - L1ME LINE L1 -481 5640 5395 616 203 0 24 chr9 40194400 40194475 -102076969 + FLAM_A SINE Alu 12 84 -227 2220 93 0 7 chr9 40194475 40194764 -102076680 + AluSc SINE Alu 11 297 -12 616 203 0 24 chr9 40194764 40194811 -102076633 + FLAM_A SINE Alu 84 131 -180 404 384 49 26 chr9 40195102 40195368 -102076076 + L2 LINE L2 357 628 -2686 1909 157 10 0 chr9 40195407 40195713 -102075731 + AluSx SINE Alu 1 309 -3 375 200 55 36 chr9 40196254 40196364 -102075080 - MIR SINE MIR -73 189 78 1350 126 0 45 chr9 40196525 40196747 -102074697 + AluJo SINE Alu 92 303 -9 1996 125 26 3 chr9 40197173 40197477 -102073967 - AluSx SINE Alu -1 311 1 480 348 28 7 chr9 40198053 40198194 -102073250 - L2 LINE L2 0 3272 3129 381 103 0 0 chr9 40198346 40198404 -102073040 - L1MD1 LINE L1 -13 6229 6172 659 172 0 39 chr9 40198404 40198532 -102072912 + FLAM_C SINE Alu 3 125 -18 24 32 0 0 chr9 40198662 40198693 -102072751 + AT_rich Low_complexity Low_complexity 1 31 0 1807 163 142 16 chr9 40199312 40199692 -102071752 + MSTA LTR MaLR 1 428 0 647 194 8 22 chr9 40200398 40200532 -102070912 + FLAM_A SINE Alu 2 133 0 24 0 0 0 chr9 40201251 40201275 -102070169 + AT_rich Low_complexity Low_complexity 1 24 0 1980 130 0 46 chr9 40201806 40202129 -102069315 - AluSx SINE Alu -4 308 1 1098 161 0 0 chr9 40202220 40202394 -102069050 - AluSx SINE Alu -138 174 1 21 0 0 0 chr9 40202638 40202659 -102068785 + AT_rich Low_complexity Low_complexity 1 21 0 184 327 0 18 chr9 40202715 40202770 -102068674 + L3 LINE CR1 1384 1437 -140 249 210 185 70 chr9 40202900 40203057 -102068387 + HAL1 LINE L1 1399 1573 -934 696 214 0 0 chr9 40203201 40203332 -102068112 + FLAM_A SINE Alu 2 132 -1 22 0 0 0 chr9 40203344 40203366 -102068078 + AT_rich Low_complexity Low_complexity 1 22 0 255 274 45 38 chr9 40203621 40203778 -102067666 + L1ME4a LINE L1 5158 5315 -831 287 301 50 81 chr9 40203827 40203992 -102067452 + L1ME4a LINE L1 5663 5832 -289 1774 102 8 4 chr9 40203992 40204237 -102067207 + AluSq SINE Alu 44 289 -24 287 301 50 81 chr9 40204237 40204400 -102067044 + L1ME4a LINE L1 5832 5978 -143 2086 94 0 91 chr9 40204400 40204730 -102066714 + AluSx SINE Alu 1 300 -12 287 301 50 81 chr9 40204730 40204822 -102066622 + L1ME4a LINE L1 5978 6071 -50 2693 250 72 17 chr9 40204827 40205196 -102066248 - L1MC/D LINE L1 -743 5403 5056 1776 162 17 0 chr9 40205196 40205492 -102065952 - AluJb SINE Alu -11 301 1 2693 250 72 17 chr9 40205492 40205844 -102065600 - L1MC/D LINE L1 -1090 5056 4686 2173 122 0 0 chr9 40205844 40206147 -102065297 - AluSx SINE Alu -9 303 1 2693 250 72 17 chr9 40206147 40206430 -102065014 - L1MC/D LINE L1 -1460 4686 4420 2442 84 0 0 chr9 40206746 40207057 -102064387 - AluY SINE Alu 0 311 1 707 179 15 22 chr9 40207064 40207198 -102064246 - FLAM_C SINE Alu 0 133 1 1617 206 3 6 chr9 40207252 40207563 -102063881 + AluJo SINE Alu 1 310 -2 764 110 0 0 chr9 40208030 40208139 -102063305 + HY1 scRNA scRNA 3 111 -1 832 243 108 0 chr9 40208736 40208950 -102062494 - MIR SINE MIR -20 242 6 23 68 0 0 chr9 40215428 40215472 -102055972 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr9 40216347 40216368 -102055076 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 40219593 40219614 -102051830 + AT_rich Low_complexity Low_complexity 1 21 0 377 194 0 0 chr9 40220709 40220776 -102050668 - U6 snRNA snRNA -1 106 40 475 316 99 28 chr9 40222186 40222398 -102049046 + MIR SINE MIR 7 233 -29 21 0 0 0 chr9 40222806 40222827 -102048617 + AT_rich Low_complexity Low_complexity 1 21 0 185 108 27 0 chr9 40224231 40224268 -102047176 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 2877 246 89 25 chr9 40228261 40228458 -102042986 - L2 LINE L2 0 3313 3130 228 35 0 0 chr9 40228458 40228487 -102042957 + (TTGG)n Simple_repeat Simple_repeat 3 31 0 2877 246 89 25 chr9 40228487 40229572 -102041872 - L2 LINE L2 -183 3130 1941 554 247 0 41 chr9 40229578 40229724 -102041720 - MIR SINE MIR -71 191 52 228 258 56 67 chr9 40230293 40230382 -102041062 + L2 LINE L2 3221 3308 -5 1191 191 60 0 chr9 40230634 40230885 -102040559 - MER58B DNA MER1_type 0 341 76 736 163 0 16 chr9 40230885 40231008 -102040436 + FLAM_C SINE Alu 2 122 -11 482 338 108 37 chr9 40231181 40231726 -102039718 + L2 LINE L2 2732 3313 0 472 288 82 65 chr9 40231808 40232114 -102039330 + L2 LINE L2 1742 2052 -1262 1946 131 28 0 chr9 40232299 40232589 -102038855 + AluSx SINE Alu 1 298 -14 282 29 0 0 chr9 40232814 40232849 -102038595 + (GTTTG)n Simple_repeat Simple_repeat 5 39 0 2126 119 0 0 chr9 40232862 40233156 -102038288 - AluSp SINE Alu -19 294 1 1538 179 28 3 chr9 40233253 40233543 -102037901 + AluJb SINE Alu 1 297 -15 1598 154 3 64 chr9 40233547 40233858 -102037586 + AluJb SINE Alu 1 292 -20 438 100 62 75 chr9 40234249 40234329 -102037115 + MADE1 DNA Mariner 2 80 0 636 324 149 30 chr9 40234644 40235197 -102036247 + L2 LINE L2 1890 2376 -938 2051 103 0 4 chr9 40235197 40235531 -102035913 - AluSg SINE Alu 0 333 1 636 324 149 30 chr9 40235531 40235856 -102035588 + L2 LINE L2 2376 2874 -440 2254 94 0 0 chr9 40236644 40236941 -102034503 - AluSx SINE Alu -15 297 1 2230 104 0 9 chr9 40236969 40237285 -102034159 - AluSq SINE Alu 0 313 1 297 350 49 7 chr9 40238027 40238170 -102033274 + MIR3 SINE MIR 22 170 -38 1523 158 0 8 chr9 40238207 40238460 -102032984 - AluJb SINE Alu -61 251 1 2084 96 10 29 chr9 40239365 40239678 -102031766 - AluSq SINE Alu -6 307 1 663 239 174 53 chr9 40239773 40240129 -102031315 + L1 LINE L1 3092 3490 -2656 740 204 0 15 chr9 40240129 40240266 -102031178 + AluJo SINE Alu 2 136 -176 24 0 0 0 chr9 40240513 40240537 -102030907 + AT_rich Low_complexity Low_complexity 1 24 0 1025 233 14 5 chr9 40242472 40242687 -102028757 + MER8 DNA MER2_type 23 239 0 402 243 86 7 chr9 40242734 40242874 -102028570 + L1ME4a LINE L1 5969 6119 -2 198 0 0 0 chr9 40245069 40245091 -102026353 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 818 153 0 0 chr9 40245091 40245209 -102026235 - FLAM_C SINE Alu -24 119 2 466 260 148 48 chr9 40246667 40246998 -102024446 - L1ME LINE L1 -313 5808 5445 828 159 48 0 chr9 40247232 40247358 -102024086 + MER20 DNA MER1_type 87 218 -1 2193 99 3 3 chr9 40247978 40248281 -102023163 - AluSg SINE Alu -7 303 1 485 248 64 55 chr9 40248306 40248508 -102022936 - LTR16C LTR ERVL -65 426 223 917 183 12 95 chr9 40248655 40248896 -102022548 + AluJo SINE Alu 1 221 -91 745 159 0 0 chr9 40249046 40249159 -102022285 - FLAM_C SINE Alu -29 114 2 1779 122 70 0 chr9 40249652 40249939 -102021505 - AluSx SINE Alu -5 307 1 2063 127 0 0 chr9 40250100 40250407 -102021037 + AluSg SINE Alu 1 307 -3 280 240 164 0 chr9 40250599 40250703 -102020741 + MER96 DNA MER1_type? 53 173 -2 213 237 0 0 chr9 40250761 40250799 -102020645 + MIR SINE MIR 40 77 -131 1636 149 3 88 chr9 40250863 40251205 -102020239 + AluSq SINE Alu 1 313 0 2194 76 3 7 chr9 40251544 40251833 -102019611 + AluSx SINE Alu 1 288 -24 30 0 0 0 chr9 40251833 40251863 -102019581 + AT_rich Low_complexity Low_complexity 1 30 0 287 196 128 122 chr9 40251921 40252069 -102019375 - MLT1H LTR MaLR -127 422 274 * 333 212 92 41 chr9 40252041 40252162 -102019282 - MLT1H LTR MaLR -379 170 41 368 257 53 35 chr9 40252511 40252624 -102018820 + MIR3 SINE MIR 45 159 -49 204 40 0 0 chr9 40252701 40252726 -102018718 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1870 142 0 4 chr9 40252726 40253007 -102018437 - AluSx SINE Alu -32 280 1 1684 142 17 37 chr9 40253009 40253305 -102018139 - AluJb SINE Alu -22 290 1 614 311 56 38 chr9 40254082 40254478 -102016966 + MLT1K LTR MaLR 176 578 -10 199 238 0 0 chr9 40254565 40254607 -102016837 + L2 LINE L2 3018 3059 -213 22 88 0 0 chr9 40254686 40254743 -102016701 + AT_rich Low_complexity Low_complexity 1 57 0 307 283 204 0 chr9 40254751 40254864 -102016580 + L2 LINE L2 3133 3268 -4 1646 164 3 35 chr9 40254940 40255252 -102016192 + AluJb SINE Alu 11 312 0 302 243 14 14 chr9 40255258 40255328 -102016116 + AluJ/FLAM SINE Alu 2 71 -231 1606 166 20 20 chr9 40255435 40255737 -102015707 - AluJo SINE Alu -6 306 5 1536 159 9 56 chr9 40255750 40256070 -102015374 - AluJb SINE Alu -7 305 1 305 80 20 0 chr9 40257946 40257996 -102013448 - L1MB2 LINE L1 0 6171 6121 2211 106 0 3 chr9 40258000 40258303 -102013141 - AluSq SINE Alu -11 302 1 2089 102 7 7 chr9 40258517 40258811 -102012633 + AluSg SINE Alu 1 294 -16 1753 170 3 0 chr9 40258822 40259110 -102012334 + AluJo SINE Alu 1 289 -23 25 0 0 0 chr9 40259110 40259135 -102012309 + AT_rich Low_complexity Low_complexity 1 25 0 304 299 0 35 chr9 40259210 40259297 -102012147 + HAL1b LINE L1 1209 1292 -56 2137 157 32 19 chr9 40259328 40259703 -102011741 - MLT1B LTR MaLR -10 380 1 1749 134 51 0 chr9 40259732 40259851 -102011593 + AluSx SINE Alu 1 112 -200 477 0 0 0 chr9 40259851 40259904 -102011540 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 1749 134 51 0 chr9 40259904 40260059 -102011385 + AluSx SINE Alu 112 289 -23 811 225 84 47 chr9 40260359 40260742 -102010702 - MLT1J2 LTR MaLR -1 445 31 263 115 173 0 chr9 40260860 40260912 -102010532 - HsTC2 DNA Tc2 -1835 63 3 600 298 114 20 chr9 40261134 40261537 -102009907 + L1ME LINE L1 5267 5707 -414 469 185 68 117 chr9 40261556 40261694 -102009750 - HAL1 LINE L1 0 2507 2383 1668 184 3 3 chr9 40261694 40261998 -102009446 - AluJb SINE Alu -8 304 1 469 185 68 117 chr9 40261998 40262081 -102009363 - HAL1 LINE L1 -124 2383 2297 1434 213 3 0 chr9 40262209 40262510 -102008934 - AluSx SINE Alu -10 302 1 567 269 14 0 chr9 40262575 40262720 -102008724 - HAL1 LINE L1 -939 1568 1422 999 197 0 0 chr9 40262776 40262959 -102008485 - AluJo SINE Alu -10 302 120 257 0 30 0 chr9 40263018 40263051 -102008393 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1409 202 7 7 chr9 40263169 40263451 -102007993 + AluJo SINE Alu 19 300 -12 1494 189 0 53 chr9 40263628 40263776 -102007668 + AluJo SINE Alu 1 124 -188 2001 94 0 36 chr9 40263776 40264083 -102007361 + AluY SINE Alu 1 296 -15 1494 189 0 53 chr9 40264083 40264256 -102007188 + AluJo SINE Alu 124 305 -7 575 264 45 75 chr9 40264261 40264526 -102006918 + L2 LINE L2 3057 3313 0 879 237 42 78 chr9 40265056 40265310 -102006134 - LTR8 LTR ERV1 -2 689 450 1783 169 0 0 chr9 40265310 40265605 -102005839 - AluSx SINE Alu -7 305 11 879 237 42 78 chr9 40265605 40265709 -102005735 - LTR8 LTR ERV1 -241 450 344 1284 206 4 4 chr9 40265854 40266106 -102005338 - AluJb SINE Alu -60 252 1 713 194 15 110 chr9 40266124 40266387 -102005057 - HAL1 LINE L1 -146 2361 2124 1910 153 3 0 chr9 40266424 40266725 -102004719 - AluSx SINE Alu -10 302 1 228 200 15 31 chr9 40266726 40266791 -102004653 - HAL1 LINE L1 -464 2043 1980 * 550 264 21 0 chr9 40266790 40266934 -102004510 - HAL1 LINE L1 -939 1568 1422 1070 180 0 0 chr9 40266990 40267173 -102004271 - AluJo SINE Alu -10 302 120 257 0 30 0 chr9 40267232 40267265 -102004179 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1409 202 7 7 chr9 40267383 40267665 -102003779 + AluJo SINE Alu 19 300 -12 327 287 88 34 chr9 40267665 40267804 -102003640 + L1ME LINE L1 5682 5825 -345 1616 174 0 53 chr9 40267842 40267990 -102003454 + AluJo SINE Alu 1 124 -188 2165 75 0 33 chr9 40267990 40268296 -102003148 + AluY SINE Alu 1 296 -15 1616 174 0 53 chr9 40268296 40268469 -102002975 + AluJo SINE Alu 124 305 -7 575 264 45 75 chr9 40268474 40268739 -102002705 + L2 LINE L2 3057 3313 0 2737 165 50 88 chr9 40269268 40269519 -102001925 - LTR8 LTR ERV1 -1 690 431 2199 109 3 0 chr9 40269519 40269823 -102001621 - AluSx SINE Alu -4 308 4 2737 165 50 88 chr9 40269823 40270257 -102001187 - LTR8 LTR ERV1 -260 431 31 2222 77 27 7 chr9 40270257 40270556 -102000888 - AluSq SINE Alu -8 305 1 2737 165 50 88 chr9 40270556 40270586 -102000858 - LTR8 LTR ERV1 -660 31 1 192 212 0 0 chr9 40270801 40270834 -102000610 + MIR SINE MIR 156 188 -74 249 253 84 0 chr9 40270892 40270975 -102000469 - L1ME LINE L1 -346 5775 5686 1645 195 115 72 chr9 40270981 40271596 -101999848 - LTR48B LTR ERV1 -2 642 1 1818 166 159 86 chr9 40271691 40271740 -101999704 - LTR24C LTR ERV1 -2 633 589 2005 119 0 32 chr9 40271740 40272052 -101999392 + AluSx SINE Alu 1 302 -10 1818 166 159 86 chr9 40272052 40272569 -101998875 - LTR24C LTR ERV1 -46 589 26 1334 69 148 10 chr9 40272739 40272941 -101998503 - MER30 DNA MER1_type 0 230 1 1943 141 7 0 chr9 40273745 40274049 -101997395 - AluJb SINE Alu -6 306 1 1863 55 59 52 chr9 40274260 40274531 -101996913 + AluSx SINE Alu 1 273 -39 330 212 54 56 chr9 40274556 40274680 -101996764 - MIR SINE MIR -36 226 101 450 198 62 77 chr9 40275143 40275297 -101996147 + MIR SINE MIR 30 192 -51 190 231 0 111 chr9 40275418 40275526 -101995918 - L2 LINE L2 -156 3116 3021 1274 169 4 0 chr9 40275710 40275935 -101995509 - AluJo SINE Alu 0 312 87 839 250 169 52 chr9 40275966 40276686 -101994758 - L2 LINE L2 0 3313 2494 207 385 52 0 chr9 40277064 40277238 -101994206 - L2 LINE L2 -508 2806 2624 619 284 39 39 chr9 40277859 40278116 -101993328 + LTR16A1 LTR ERVL 201 457 0 215 163 0 61 chr9 40278394 40278443 -101993001 + MIR SINE MIR 102 147 -61 232 323 39 31 chr9 40278915 40279042 -101992402 + MIR SINE MIR 18 145 -63 1521 206 47 23 chr9 40279393 40279737 -101991707 - MSTD LTR MaLR 0 396 45 997 148 0 0 chr9 40279737 40279912 -101991532 - AluSp SINE Alu 0 311 137 257 152 87 0 chr9 40279916 40279962 -101991482 - MSTD LTR MaLR -378 50 1 275 187 101 122 chr9 40279972 40280111 -101991333 + MIR SINE MIR 47 182 -80 209 245 29 11 chr9 40280485 40280579 -101990865 + MIR SINE MIR 46 145 -63 562 276 36 0 chr9 40280638 40280832 -101990612 + MIR SINE MIR 18 219 -43 312 294 119 25 chr9 40280895 40281096 -101990348 + L2 LINE L2 2831 3050 -222 302 241 131 105 chr9 40281320 40281511 -101989933 - L2 LINE L2 0 3313 3118 1805 124 4 0 chr9 40281521 40281826 -101989618 + AluSx SINE Alu 58 310 -2 477 221 151 70 chr9 40281916 40282088 -101989356 + MER5A DNA MER1_type 4 189 0 966 277 78 0 chr9 40282121 40282417 -101989027 + MER58B DNA MER1_type 23 341 0 215 280 0 67 chr9 40282418 40282493 -101988951 - MIR3 SINE MIR -49 159 90 668 214 46 23 chr9 40282582 40282755 -101988689 + MLT1G3 LTR MaLR 154 330 -200 424 301 49 0 chr9 40283363 40283486 -101987958 + MIR SINE MIR 52 180 -82 625 244 184 5 chr9 40283561 40283762 -101987682 + MIR SINE MIR 13 249 -13 212 194 0 104 chr9 40284001 40284068 -101987376 - MIR SINE MIR -72 136 77 694 277 35 27 chr9 40284527 40284787 -101986657 - MIR SINE MIR 0 262 1 198 305 84 38 chr9 40284787 40285046 -101986398 - L2 LINE L2 -824 2490 2220 1506 164 56 31 chr9 40285174 40285460 -101985984 - AluJo SINE Alu -19 293 1 35 0 0 0 chr9 40285466 40285501 -101985943 + AT_rich Low_complexity Low_complexity 1 35 0 2332 102 3 6 chr9 40285512 40285825 -101985619 - AluSx SINE Alu 0 312 1 1080 213 28 44 chr9 40286010 40286259 -101985185 - AluJo SINE Alu -67 245 1 1918 146 36 7 chr9 40286329 40286630 -101984814 + AluJb SINE Alu 1 310 -2 1386 281 57 5 chr9 40286643 40287131 -101984313 - L1MC4a LINE L1 -234 5928 5383 1927 151 0 7 chr9 40287132 40287452 -101983992 - AluSx SINE Alu 0 322 5 338 227 0 0 chr9 40287459 40287525 -101983919 + MER2 DNA MER2_type 280 345 0 190 327 91 50 chr9 40287860 40288059 -101983385 + L2 LINE L2 2770 2976 -338 1396 220 102 9 chr9 40288574 40288997 -101982447 - MLT1C LTR MaLR 0 467 6 305 232 20 71 chr9 40290003 40290102 -101981342 + MIR3 SINE MIR 109 202 -6 1002 86 0 0 chr9 40290635 40290763 -101980681 + FLAM_C SINE Alu 1 128 -5 1862 141 58 10 chr9 40290790 40291081 -101980363 + AluJo SINE Alu 1 305 -7 230 263 0 18 chr9 40291308 40291365 -101980079 - L2 LINE L2 0 3272 3217 377 355 25 0 chr9 40291447 40291568 -101979876 - L2 LINE L2 -13 3259 3136 1676 152 40 18 chr9 40292102 40292402 -101979042 + AluJb SINE Alu 1 306 0 248 365 56 81 chr9 40292501 40292822 -101978622 - L2 LINE L2 -85 3187 2875 219 191 191 29 chr9 40292904 40292972 -101978472 + MIR SINE MIR 114 192 -70 1629 177 11 4 chr9 40293067 40293338 -101978106 + AluJo SINE Alu 23 295 -17 2351 95 0 3 chr9 40293424 40293720 -101977724 + AluY SINE Alu 1 295 -16 1759 154 149 0 chr9 40293924 40294267 -101977177 - MLT2C1 LTR ERVL -3 394 1 284 375 59 0 chr9 40294539 40294691 -101976753 + L3 LINE CR1 1345 1505 -72 244 231 70 141 chr9 40295396 40295595 -101975849 - MIR3 SINE MIR -19 189 5 397 270 115 7 chr9 40296085 40296233 -101975211 - MIR3 SINE MIR -28 180 17 332 298 120 56 chr9 40296809 40297185 -101974259 + L2 LINE L2 2852 3251 -21 366 311 8 0 chr9 40297516 40297638 -101973806 + (CA)n Simple_repeat Simple_repeat 1 123 0 821 148 0 63 chr9 40298041 40298183 -101973261 + FLAM_C SINE Alu 1 133 0 245 313 224 29 chr9 40298218 40298333 -101973111 - L2 LINE L2 -25 3247 3156 1787 157 24 3 chr9 40298333 40298620 -101972824 + AluJb SINE Alu 1 293 -19 245 313 224 29 chr9 40298620 40298776 -101972668 - L2 LINE L2 -116 3156 2923 452 174 54 0 chr9 40298781 40298873 -101972571 - L1ME3 LINE L1 -220 5942 5846 504 230 12 79 chr9 40299389 40299410 -101972034 + MER5B DNA MER1_type 25 46 -132 2442 74 7 0 chr9 40299410 40299707 -101971737 - AluY SINE Alu -12 299 1 504 230 12 79 chr9 40299707 40299850 -101971594 + MER5B DNA MER1_type 46 178 0 1388 203 101 33 chr9 40300016 40300381 -101971063 + MLT1B LTR MaLR 1 390 0 374 330 118 9 chr9 40300393 40300614 -101970830 + L1ME4a LINE L1 5572 5816 -305 1666 122 50 72 chr9 40300661 40300980 -101970464 - AluSx SINE Alu 0 312 1 2444 102 0 0 chr9 40301003 40301307 -101970137 + AluSx SINE Alu 1 304 -8 821 213 191 11 chr9 40301362 40301635 -101969809 + L1ME3A LINE L1 5743 6064 -106 191 242 274 57 chr9 40302024 40302148 -101969296 - L2 LINE L2 -201 3071 2921 336 24 0 0 chr9 40302477 40302518 -101968926 + (TG)n Simple_repeat Simple_repeat 2 42 0 2296 113 6 3 chr9 40302708 40303019 -101968425 + AluSq SINE Alu 1 312 -1 675 126 0 0 chr9 40303037 40303132 -101968312 - FLAM_A SINE Alu -26 116 22 215 196 0 54 chr9 40303229 40303285 -101968159 - MIR SINE MIR -55 153 101 315 205 32 22 chr9 40304342 40304453 -101966991 + (TA)n Simple_repeat Simple_repeat 2 117 -71 2331 105 0 3 chr9 40304453 40304759 -101966685 - AluSx SINE Alu -7 305 1 315 205 32 22 chr9 40304759 40304832 -101966612 + (TA)n Simple_repeat Simple_repeat 117 188 0 231 253 0 42 chr9 40304832 40304927 -101966517 + L1ME4a LINE L1 5926 6016 -105 207 242 147 32 chr9 40305161 40305256 -101966188 + L2 LINE L2 3203 3308 -5 597 184 0 20 chr9 40305256 40305408 -101966036 + GA-rich Low_complexity Low_complexity 3 151 0 2058 115 3 11 chr9 40305598 40305910 -101965534 + AluSx SINE Alu 1 310 0 395 359 94 17 chr9 40305911 40306209 -101965235 - L1ME4a LINE L1 -86 6035 5715 275 273 0 0 chr9 40306496 40306562 -101964882 - MER5C DNA MER1_type -257 67 2 253 359 0 22 chr9 40307016 40307108 -101964336 - L2 LINE L2 -566 2748 2659 554 237 49 73 chr9 40307242 40307585 -101963859 + MLT1H LTR MaLR 120 549 0 278 220 232 30 chr9 40308508 40308676 -101962768 + MIR3 SINE MIR 2 203 -5 368 248 91 16 chr9 40309164 40309285 -101962159 - MIR SINE MIR -52 210 81 864 55 0 0 chr9 40309334 40309444 -101962000 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 704 148 33 8 chr9 40309444 40309561 -101961883 - FLAM_C SINE Alu -12 121 2 805 244 47 63 chr9 40310113 40310278 -101961166 - LTR16A LTR ERVL -54 396 230 2225 117 0 13 chr9 40310278 40310578 -101960866 + AluSx SINE Alu 1 296 -16 805 244 47 63 chr9 40310578 40310793 -101960651 - LTR16A LTR ERVL -220 230 22 191 298 67 19 chr9 40310839 40310943 -101960501 + MIR SINE MIR 143 251 -11 322 274 59 0 chr9 40311017 40311119 -101960325 - L3 LINE CR1 -78 1499 1392 2872 157 11 25 chr9 40311119 40311648 -101959796 - L1MB3 LINE L1 0 6183 5662 2322 94 0 0 chr9 40311658 40311944 -101959500 + AluSx SINE Alu 12 297 -15 700 171 0 24 chr9 40312054 40312177 -101959267 + AluSg/x SINE Alu 179 298 -14 1707 124 23 8 chr9 40312178 40312444 -101959000 - LTR28 LTR ERV1 -750 270 1 446 170 85 0 chr9 40312496 40312590 -101958854 + HsTC2 DNA Tc2 1790 1891 -7 560 177 94 0 chr9 40312618 40312714 -101958730 + FLAM_A SINE Alu 10 114 -28 2023 116 7 26 chr9 40312992 40313295 -101958149 - AluSx SINE Alu -15 297 1 1942 157 0 25 chr9 40313836 40314155 -101957289 - AluJo SINE Alu 0 312 2 612 174 138 0 chr9 40314177 40314286 -101957158 - FLAM_C SINE Alu -18 125 2 2190 88 7 17 chr9 40314290 40314584 -101956860 - AluSp SINE Alu -22 291 1 1800 130 31 15 chr9 40314625 40314730 -101956714 + AluSg SINE Alu 30 132 -178 2500 67 3 0 chr9 40314730 40315027 -101956417 + AluY SINE Alu 1 298 -13 1800 130 31 15 chr9 40315027 40315182 -101956262 + AluSg SINE Alu 132 294 -16 2200 96 3 3 chr9 40315265 40315547 -101955897 - AluSp SINE Alu -16 297 16 3991 162 35 35 chr9 40315573 40316462 -101954982 - Charlie1 DNA MER1_type -259 2502 1614 293 260 96 10 chr9 40316603 40316707 -101954737 + LTR67 LTR ERVL 442 554 -3 1856 160 17 0 chr9 40317215 40317509 -101953935 + AluJb SINE Alu 6 304 -8 214 240 300 10 chr9 40317937 40318037 -101953407 - L2 LINE L2 -5 3308 3180 2148 122 0 3 chr9 40318499 40318793 -101952651 + AluJb SINE Alu 11 303 -9 460 180 30 40 chr9 40318799 40318899 -101952545 + FLAM_C SINE Alu 31 129 -14 4437 141 93 12 chr9 40319010 40319774 -101951670 - LTR1B LTR ERV1 0 826 1 553 299 74 68 chr9 40320799 40321137 -101950307 - MLT1K LTR MaLR -174 414 75 1632 144 39 0 chr9 40321274 40321530 -101949914 + AluJo SINE Alu 15 280 -32 626 278 79 21 chr9 40321840 40322221 -101949223 + LTR16A1 LTR ERVL 78 457 0 1882 113 4 8 chr9 40322362 40322619 -101948825 - AluSg SINE Alu -54 256 1 696 295 24 16 chr9 40322844 40323098 -101948346 - L1MEc LINE L1 -6030 366 111 1843 121 6 107 chr9 40323193 40323540 -101947904 - AluJb SINE Alu 0 312 1 393 278 74 9 chr9 40323549 40323765 -101947679 - L1MC/D LINE L1 -1987 5821 5592 694 292 27 21 chr9 40324257 40324485 -101946959 - L1MC/D LINE L1 -2215 5593 5361 2258 104 0 0 chr9 40324485 40324783 -101946661 - AluSg SINE Alu 0 310 13 694 292 27 21 chr9 40324783 40324886 -101946558 - L1MC/D LINE L1 -2447 5361 5260 1834 165 14 3 chr9 40324911 40325196 -101946248 + AluJo SINE Alu 1 288 -24 334 309 64 77 chr9 40325215 40325391 -101946053 - L1MC/D LINE L1 -907 5239 5065 2081 141 7 3 chr9 40325391 40325689 -101945755 + AluSx SINE Alu 1 299 -13 334 309 64 77 chr9 40325689 40325745 -101945699 - L1MC/D LINE L1 -1081 5065 5010 344 146 49 61 chr9 40325782 40325864 -101945580 - MER51A LTR ERV1 0 634 554 1198 133 0 0 chr9 40325872 40326045 -101945399 - AluSp SINE Alu -8 305 133 180 0 0 0 chr9 40326045 40326065 -101945379 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2347 60 0 4 chr9 40326065 40326346 -101945098 - AluY SINE Alu -31 280 1 681 177 23 98 chr9 40326346 40326561 -101944883 - MER51A LTR ERV1 -94 540 342 241 200 18 0 chr9 40326562 40326617 -101944827 - MER51A LTR ERV1 -402 232 177 755 99 25 0 chr9 40326617 40326738 -101944706 + (CCTTG)n Simple_repeat Simple_repeat 2 125 0 1950 67 4 0 chr9 40326938 40327176 -101944268 - AluSq SINE Alu -74 239 1 312 161 0 0 chr9 40327287 40327343 -101944101 - MER51A LTR ERV1 -578 56 1 2457 78 0 7 chr9 40327602 40327909 -101943535 - AluSg SINE Alu -5 305 1 276 340 68 17 chr9 40328064 40328299 -101943145 - L1ME LINE L1 -415 5706 5460 2209 100 0 13 chr9 40328617 40328916 -101942528 - AluSx SINE Alu -17 295 1 180 0 0 0 chr9 40329549 40329569 -101941875 + (TG)n Simple_repeat Simple_repeat 2 21 0 286 297 156 23 chr9 40330860 40330988 -101940456 - L2 LINE L2 -9 3263 3119 23 33 0 0 chr9 40332132 40332162 -101939282 + AT_rich Low_complexity Low_complexity 1 30 0 542 206 53 114 chr9 40332417 40332625 -101938819 - MER58C DNA MER1_type -2205 215 21 1813 187 18 59 chr9 40332625 40332797 -101938647 + MLT1A2 LTR MaLR 1 179 -195 1959 120 0 0 chr9 40332797 40333115 -101938329 + AluSg SINE Alu 6 323 0 1813 187 18 59 chr9 40333115 40333331 -101938113 + MLT1A2 LTR MaLR 179 374 0 542 206 53 114 chr9 40333331 40333350 -101938094 - MER58C DNA MER1_type -2399 21 2 1496 233 35 4 chr9 40333351 40333871 -101937573 + L1MEc LINE L1 2057 2551 -3664 1094 199 76 56 chr9 40333871 40333919 -101937525 - MSTD LTR MaLR -2 394 348 2480 121 86 8 chr9 40333919 40334316 -101937128 - MSTA LTR MaLR 0 428 1 1094 199 76 56 chr9 40334316 40334569 -101936875 - MSTD LTR MaLR -48 348 87 225 154 0 0 chr9 40334569 40334608 -101936836 + (TG)n Simple_repeat Simple_repeat 1 39 0 716 248 0 0 chr9 40334610 40334759 -101936685 - AluJb SINE Alu -31 281 133 207 0 0 0 chr9 40334759 40334782 -101936662 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1028 108 18 24 chr9 40334785 40334952 -101936492 - AluSq SINE Alu -28 285 120 2054 118 3 7 chr9 40335062 40335367 -101936077 + AluSx SINE Alu 1 304 -8 2385 66 0 7 chr9 40337787 40338089 -101933355 - AluY SINE Alu -11 300 1 26 30 0 0 chr9 40338453 40338486 -101932958 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 40338901 40338922 -101932522 + AT_rich Low_complexity Low_complexity 1 21 0 2586 72 12 0 chr9 40339104 40339439 -101932005 + L1PA13 LINE L1 5816 6154 -9 189 0 0 0 chr9 40339501 40339522 -101931922 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1396 169 24 0 chr9 40339526 40339775 -101931669 - AluJo SINE Alu -28 284 30 235 235 184 20 chr9 40339787 40339983 -101931461 + L1ME4a LINE L1 5882 6109 -12 657 300 132 66 chr9 40340002 40340625 -101930819 + L3 LINE CR1 839 1502 -75 281 262 19 19 chr9 40340637 40340740 -101930704 + GA-rich Low_complexity Low_complexity 5 107 0 2365 78 3 0 chr9 40340750 40341058 -101930386 + AluSg SINE Alu 1 309 -1 2036 109 0 0 chr9 40341359 40341682 -101929762 + AluSq SINE Alu 1 323 0 468 189 30 8 chr9 40342119 40342231 -101929213 - MER5A DNA MER1_type -71 118 4 227 222 56 0 chr9 40342379 40342433 -101929011 - L2 LINE L2 -1 3271 3215 204 318 80 0 chr9 40342438 40342526 -101928918 - L2 LINE L2 -9 3263 3169 297 179 167 0 chr9 40342529 40342607 -101928837 - L2 LINE L2 0 3313 3223 208 278 0 19 chr9 40342701 40342755 -101928689 + T-rich Low_complexity Low_complexity 4 56 0 631 194 113 88 chr9 40342804 40342881 -101928563 + L1MC4 LINE L1 7612 7686 -356 1508 154 37 60 chr9 40342881 40343180 -101928264 + AluJb SINE Alu 1 292 -20 631 194 113 88 chr9 40343180 40343265 -101928179 + L1MC4 LINE L1 7686 7767 -275 1626 151 58 0 chr9 40343265 40343557 -101927887 - AluJo SINE Alu -2 310 2 631 194 113 88 chr9 40343557 40343676 -101927768 + L1MC4 LINE L1 7767 7901 -141 421 277 141 31 chr9 40343896 40344363 -101927081 + MER115 DNA AcHobo 19 587 -106 195 259 143 45 chr9 40345627 40345739 -101925705 - L2 LINE L2 0 3313 3191 578 100 290 0 chr9 40345741 40345841 -101925603 - MER20 DNA MER1_type 0 219 91 204 336 88 22 chr9 40345989 40346126 -101925318 - L2 LINE L2 -229 3043 2898 292 285 54 9 chr9 40346935 40347065 -101924379 + MIR SINE MIR 12 146 -62 209 255 0 0 chr9 40347439 40347486 -101923958 + (CATCC)n Simple_repeat Simple_repeat 5 51 0 2147 98 10 0 chr9 40347604 40347901 -101923543 + AluSx SINE Alu 1 300 -12 2002 116 0 0 chr9 40348237 40348512 -101922932 - AluSx SINE Alu -37 275 1 453 271 28 0 chr9 40348520 40348627 -101922817 - L2 LINE L2 -5 3308 3199 26 50 0 0 chr9 40348736 40348776 -101922668 + AT_rich Low_complexity Low_complexity 1 40 0 1985 138 0 0 chr9 40350105 40350402 -101921042 - AluSx SINE Alu -15 297 1 526 253 248 5 chr9 40350641 40350843 -101920601 - MIR SINE MIR -10 252 2 517 248 23 8 chr9 40350956 40351085 -101920359 + MIR3 SINE MIR 37 167 -41 278 250 60 0 chr9 40351117 40351201 -101920243 - MER103 DNA DNA -29 137 49 253 298 79 9 chr9 40351375 40351489 -101919955 + MIR3 SINE MIR 83 204 -4 383 244 38 38 chr9 40351760 40351891 -101919553 + MER117 DNA MER1_type 38 168 -29 244 311 0 0 chr9 40351903 40351964 -101919480 + MER117 DNA MER1_type 136 196 -1 268 288 43 43 chr9 40352016 40352155 -101919289 - MIR SINE MIR -61 201 63 778 167 0 38 chr9 40352846 40352978 -101918466 - FLAM_A SINE Alu -3 130 4 1703 178 0 3 chr9 40353091 40353377 -101918067 - AluJo SINE Alu -27 285 1 28 48 0 0 chr9 40354774 40354816 -101916628 + AT_rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr9 40355014 40355037 -101916407 + (T)n Simple_repeat Simple_repeat 1 23 0 318 296 25 0 chr9 40355174 40355255 -101916189 + MIR3 SINE MIR 104 186 -22 776 254 28 44 chr9 40355294 40355469 -101915975 - MIR SINE MIR 0 262 90 2067 93 7 0 chr9 40355469 40355781 -101915663 + AluSp SINE Alu 2 315 0 776 254 28 44 chr9 40355781 40355856 -101915588 - MIR SINE MIR -172 90 15 1119 195 0 43 chr9 40355869 40356079 -101915365 + MER58A DNA MER1_type 1 201 -23 1165 142 52 0 chr9 40356149 40356360 -101915084 - AluJo SINE Alu -2 310 89 340 291 0 27 chr9 40356783 40356893 -101914551 + MIR3 SINE MIR 97 203 -5 2033 122 19 41 chr9 40357256 40357541 -101913903 - MER7A DNA MER2_type -2693 345 68 1450 167 55 4 chr9 40357541 40357816 -101913628 + AluJo SINE Alu 1 289 -23 2033 122 19 41 chr9 40357816 40357850 -101913594 - MER7A DNA MER2_type -2970 68 35 1894 110 11 14 chr9 40357978 40358301 -101913143 - AluSx SINE Alu 0 322 1 2271 92 0 0 chr9 40358314 40358617 -101912827 - AluSg SINE Alu -7 303 1 2108 105 0 0 chr9 40358624 40358953 -101912491 - AluSx SINE Alu 0 329 1 245 163 47 0 chr9 40359606 40359649 -101911795 - MER103 DNA DNA -79 87 43 191 259 56 0 chr9 40360550 40360604 -101910840 - MIR SINE MIR -71 137 81 339 271 161 8 chr9 40360681 40360799 -101910645 + L3 LINE CR1 1259 1394 -183 1624 167 20 20 chr9 40361766 40362072 -101909372 + AluJo SINE Alu 3 308 -4 2238 96 0 7 chr9 40362544 40362845 -101908599 - AluSg SINE Alu -11 299 1 522 277 33 33 chr9 40362872 40363085 -101908359 + L2 LINE L2 2148 2360 -954 519 304 39 70 chr9 40363086 40363233 -101908211 + L1MEc LINE L1 36 186 -6210 2024 110 14 0 chr9 40363233 40363523 -101907921 + AluSq SINE Alu 1 294 -19 519 304 39 70 chr9 40363523 40363733 -101907711 + L1MEc LINE L1 186 382 -6014 268 331 83 41 chr9 40363872 40364017 -101907427 - L2 LINE L2 0 3272 3122 1847 99 4 4 chr9 40364096 40364349 -101907095 - AluSx SINE Alu -59 253 1 1641 185 6 31 chr9 40364350 40364675 -101906769 + L1ME2 LINE L1 5558 5874 -290 1467 183 44 4 chr9 40364676 40364794 -101906650 + AluJo SINE Alu 1 113 -200 207 88 0 0 chr9 40364794 40364828 -101906616 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1467 183 44 4 chr9 40364828 40365011 -101906433 + AluJo SINE Alu 113 313 0 747 177 21 136 chr9 40365011 40365045 -101906399 + L1ME2 LINE L1 5949 5985 -179 1717 136 28 11 chr9 40365045 40365332 -101906112 + AluJo SINE Alu 1 292 -20 747 177 21 136 chr9 40365332 40365471 -101905973 + L1ME2 LINE L1 5985 6089 -75 2243 113 0 0 chr9 40365471 40365780 -101905664 + AluSx SINE Alu 1 309 -3 747 177 21 136 chr9 40365780 40365848 -101905596 + L1ME2 LINE L1 6089 6163 -1 2118 95 0 0 chr9 40366120 40366414 -101905030 - AluY SINE Alu -15 296 3 238 317 130 25 chr9 40366415 40366576 -101904868 + L2 LINE L2 2693 2870 -444 259 300 58 17 chr9 40366704 40366824 -101904620 - L1ME3A LINE L1 -37 6133 6009 939 245 65 43 chr9 40366957 40367329 -101904115 - L1MC5 LINE L1 -426 7535 7156 447 216 56 48 chr9 40367395 40367520 -101903924 - L1MC5 LINE L1 -820 7141 7016 2239 108 0 6 chr9 40367539 40367853 -101903591 - AluSx SINE Alu 0 312 1 1914 115 31 0 chr9 40367853 40368140 -101903304 - AluSx SINE Alu -16 296 1 247 236 18 0 chr9 40368140 40368195 -101903249 - L1MC5 LINE L1 -931 7030 6975 * 3135 221 90 36 chr9 40368194 40369697 -101901747 - MSTD-int LTR MaLR -8 1727 2 1143 220 158 42 chr9 40369698 40369770 -101901674 - MSTD LTR MaLR 0 396 334 2214 80 0 29 chr9 40369770 40370084 -101901360 + AluY SINE Alu 1 305 -6 1143 220 158 42 chr9 40370084 40370366 -101901078 - MSTD LTR MaLR -62 334 1 421 229 9 18 chr9 40370515 40370624 -101900820 - L1MC5 LINE L1 -1051 6910 6803 2627 192 29 23 chr9 40370671 40370721 -101900723 - L1MD2 LINE L1 -24 6335 6287 2304 71 0 31 chr9 40370721 40371044 -101900400 + AluSp SINE Alu 1 313 0 2627 192 29 23 chr9 40371044 40371549 -101899895 - L1MD2 LINE L1 -72 6287 5777 1823 172 123 93 chr9 40371572 40372142 -101899302 - L1ME2 LINE L1 -70 6094 5508 819 186 19 6 chr9 40372153 40372314 -101899130 - FRAM SINE Alu -14 162 1 2054 211 60 13 chr9 40372315 40372471 -101898973 - L1ME2 LINE L1 -675 5489 5342 2114 108 0 23 chr9 40372471 40372778 -101898666 - AluSq SINE Alu -13 300 1 2054 211 60 13 chr9 40372778 40373310 -101898134 - L1ME2 LINE L1 -822 5342 4764 1095 205 69 39 chr9 40373328 40373631 -101897813 - L1MD2 LINE L1 -1015 5131 4816 2242 100 0 3 chr9 40373631 40373942 -101897502 - AluSx SINE Alu -2 310 1 1095 205 69 39 chr9 40373942 40373970 -101897474 - L1MD2 LINE L1 -1330 4816 4790 282 259 74 0 chr9 40373954 40374035 -101897409 - L1MC5 LINE L1 -1232 6729 6643 * 2227 78 10 3 chr9 40375911 40376206 -101895238 - AluSp SINE Alu -16 297 1 328 249 124 59 chr9 40376251 40376420 -101895024 - MER5A DNA MER1_type 0 189 10 535 169 173 0 chr9 40376499 40376626 -101894818 + MIR SINE MIR 38 188 -62 1025 334 8 19 chr9 40376651 40377028 -101894416 + MLT1I LTR MaLR 11 383 -26 22 0 0 0 chr9 40377728 40377750 -101893694 + AT_rich Low_complexity Low_complexity 1 22 0 2276 71 0 0 chr9 40377959 40378266 -101893178 + AluY SINE Alu 2 308 0 919 178 0 12 chr9 40378271 40378440 -101893004 - FRAM SINE Alu -8 168 2 233 298 38 0 chr9 40378612 40378700 -101892744 + MIR SINE MIR 65 146 -62 873 192 253 0 chr9 40378749 40378994 -101892450 - L2 LINE L2 -2 3311 3005 285 320 73 13 chr9 40378987 40379137 -101892307 - L2 LINE L2 -1095 2219 2061 * 509 241 69 35 chr9 40379609 40379754 -101891690 + L2 LINE L2 3162 3311 -2 196 330 68 23 chr9 40379870 40379958 -101891486 - L2 LINE L2 -14 3299 3208 2050 124 61 25 chr9 40380056 40380418 -101891026 + THE1C LTR MaLR 1 375 0 9897 101 38 66 chr9 40380418 40382045 -101889399 + THE1C-int LTR MaLR 1 1580 0 1988 116 79 22 chr9 40382045 40382400 -101889044 + THE1C LTR MaLR 1 375 0 314 223 316 14 chr9 40382600 40382739 -101888705 + MER5A DNA MER1_type 9 189 0 285 309 86 7 chr9 40382745 40382884 -101888560 - MIR SINE MIR -106 156 7 * 395 317 22 17 chr9 40382883 40383088 -101888356 - L2 LINE L2 -226 3046 2841 193 270 120 30 chr9 40383257 40383357 -101888087 + MIR SINE MIR 63 171 -91 1307 161 5 18 chr9 40383369 40383587 -101887857 + AluSg/x SINE Alu 93 307 -2 238 266 97 18 chr9 40384189 40384228 -101887216 - MIR SINE MIR -18 244 210 2220 137 0 6 chr9 40384228 40384542 -101886902 - AluJo SINE Alu 0 312 1 238 266 97 18 chr9 40384542 40384615 -101886829 - MIR SINE MIR -52 210 123 1241 87 0 0 chr9 40384778 40384927 -101886517 - AluSq/x SINE Alu -163 149 1 2162 130 0 0 chr9 40385293 40385586 -101885858 - AluSx SINE Alu -10 302 10 907 246 50 80 chr9 40386048 40386782 -101884662 + L1ME3A LINE L1 2466 3174 -3366 849 147 32 26 chr9 40386786 40386942 -101884502 + FRAM SINE Alu 3 159 -17 677 263 56 30 chr9 40386956 40387127 -101884317 + L1ME3A LINE L1 3172 3337 -3203 2133 118 6 16 chr9 40387127 40387441 -101884003 + AluSq SINE Alu 1 311 -2 677 263 56 30 chr9 40387441 40387698 -101883746 + L1ME3A LINE L1 3337 3611 -2929 509 296 101 45 chr9 40387704 40387811 -101883633 + L1ME3A LINE L1 3640 3740 -2800 2442 74 0 3 chr9 40387811 40388108 -101883336 + AluSc SINE Alu 1 296 -13 509 296 101 45 chr9 40388108 40388308 -101883136 + L1ME3A LINE L1 3740 3964 -2576 292 240 67 48 chr9 40388322 40388426 -101883018 + HERV16 LTR ERVL 4801 4906 -90 230 348 61 0 chr9 40388527 40388642 -101882802 + LTR16A1 LTR ERVL 1 122 -335 254 208 123 28 chr9 40388664 40388770 -101882674 + LTR16A1 LTR ERVL 328 443 -14 306 0 0 0 chr9 40388813 40388847 -101882597 + (TA)n Simple_repeat Simple_repeat 2 35 0 542 257 32 14 chr9 40388852 40388951 -101882493 + L1ME3A LINE L1 5684 5780 -776 1659 162 65 14 chr9 40388951 40389241 -101882203 + AluJo SINE Alu 1 305 -7 542 257 32 14 chr9 40389241 40389413 -101882031 + L1ME3A LINE L1 5780 5950 -606 534 281 144 0 chr9 40389420 40389705 -101881739 + L1ME3A LINE L1 6019 6344 -220 914 148 41 70 chr9 40391603 40391783 -101879661 - L1MC3 LINE L1 -21 7764 7591 2027 143 0 20 chr9 40391783 40392084 -101879360 - AluJb SINE Alu -17 295 1 914 148 41 70 chr9 40392084 40392147 -101879297 - L1MC3 LINE L1 -194 7591 7528 721 238 79 55 chr9 40392278 40392568 -101878876 + MLT1I LTR MaLR 97 393 -16 389 311 129 34 chr9 40392960 40393224 -101878220 + L2 LINE L2 2977 3265 -7 312 300 144 22 chr9 40393278 40393458 -101877986 - L3 LINE CR1 -258 1319 1118 259 149 43 0 chr9 40394368 40394415 -101877029 + L1MC4 LINE L1 6794 6842 -1200 962 144 62 0 chr9 40394417 40394577 -101876867 + FRAM SINE Alu 1 169 -7 2688 226 186 12 chr9 40394577 40395603 -101875841 + L1MC4 LINE L1 6834 8038 -4 536 315 119 28 chr9 40395642 40395928 -101875516 - L3 LINE CR1 -849 728 417 213 216 118 0 chr9 40396036 40396087 -101875357 - L2 LINE L2 -4 3268 3212 2157 82 54 0 chr9 40396378 40396657 -101874787 + AluSp SINE Alu 1 294 -19 2319 89 3 26 chr9 40397440 40397753 -101873691 + AluSg SINE Alu 1 306 -4 1027 157 34 6 chr9 40398035 40398213 -101873231 - LTR28 LTR ERV1 -837 183 1 344 211 84 11 chr9 40398265 40398360 -101873084 + HsTC2 DNA Tc2 1790 1891 -7 428 240 94 0 chr9 40398388 40398484 -101872960 + FLAM_A SINE Alu 10 114 -28 2023 116 7 26 chr9 40398762 40399065 -101872379 - AluSx SINE Alu -15 297 1 1942 157 0 25 chr9 40399605 40399924 -101871520 - AluJo SINE Alu 0 312 2 612 174 138 0 chr9 40399946 40400055 -101871389 - FLAM_C SINE Alu -18 125 2 971 72 7 36 chr9 40400059 40400197 -101871247 - AluSp/q SINE Alu -22 291 158 1696 208 56 19 chr9 40400230 40400691 -101870753 - L1M1 LINE L1 -4169 3396 2919 276 326 63 11 chr9 40401750 40401845 -101869599 + MIR SINE MIR 32 131 -77 1350 164 30 112 chr9 40401847 40402152 -101869292 - AluJb SINE Alu -27 285 6 1164 175 21 67 chr9 40402188 40402420 -101869024 + L1ME1 LINE L1 5687 5905 -261 2246 101 0 49 chr9 40402420 40402748 -101868696 - AluSx SINE Alu 0 312 1 1164 175 21 67 chr9 40402748 40402800 -101868644 + L1ME1 LINE L1 5905 5958 -208 277 205 32 116 chr9 40403308 40403414 -101868030 + Charlie7 DNA MER1_type 2438 2523 -89 2094 119 10 0 chr9 40403414 40403707 -101867737 + AluSx SINE Alu 6 301 -11 277 205 32 116 chr9 40403707 40403790 -101867654 + Charlie7 DNA MER1_type 2523 2611 -1 242 258 106 113 chr9 40404091 40404347 -101867097 - L2 LINE L2 -693 2621 2368 433 237 0 11 chr9 40404469 40404562 -101866882 - MIR SINE MIR -83 125 34 384 234 136 32 chr9 40405070 40405224 -101866220 - L2 LINE L2 -183 3089 2920 3364 96 32 39 chr9 40405390 40405539 -101865905 + L1PB2 LINE L1 5620 5769 -382 2230 97 33 13 chr9 40405539 40405839 -101865605 + AluSp SINE Alu 1 306 -7 3364 96 32 39 chr9 40405839 40406223 -101865221 + L1PB2 LINE L1 5769 6149 -2 186 289 174 8 chr9 40406477 40406598 -101864846 - L2 LINE L2 -212 3060 2920 253 330 9 9 chr9 40406739 40406848 -101864596 + L2 LINE L2 2960 3068 -204 355 244 70 94 chr9 40407549 40407750 -101863694 - L3 LINE CR1 -37 1540 1345 2592 57 0 0 chr9 40407764 40408064 -101863380 - AluY SINE Alu -11 300 1 1805 134 12 66 chr9 40408670 40408990 -101862454 - AluJo SINE Alu -9 303 1 1428 154 17 137 chr9 40409169 40409519 -101861925 - AluJo SINE Alu -4 308 1 394 242 174 0 chr9 40409520 40409669 -101861775 - MER104 DNA Tc2 0 180 6 839 169 6 28 chr9 40410060 40410237 -101861207 + SVA Other Other 431 603 -783 27 29 0 0 chr9 40410323 40410357 -101861087 + AT_rich Low_complexity Low_complexity 1 34 0 810 233 0 11 chr9 40411017 40411193 -101860251 + MIR SINE MIR 41 214 -48 225 313 167 0 chr9 40411567 40411663 -101859781 - MIR SINE MIR -72 136 25 268 282 28 92 chr9 40411936 40412078 -101859366 + L2 LINE L2 3090 3222 -50 1962 143 3 13 chr9 40412123 40412423 -101859021 + AluJb SINE Alu 1 297 -15 2482 56 17 13 chr9 40412495 40412797 -101858647 + AluSp SINE Alu 1 303 -10 380 293 195 43 chr9 40412900 40413316 -101858128 + L2 LINE L2 2827 3305 -8 637 297 79 61 chr9 40413328 40413671 -101857773 - L2 LINE L2 -4 3268 2920 750 93 28 19 chr9 40414104 40414212 -101857232 + AluJb SINE Alu 98 206 -106 1880 123 61 4 chr9 40414417 40414694 -101856750 - AluSx SINE Alu -19 293 1 716 200 0 0 chr9 40414746 40414871 -101856573 - FLAM_A SINE Alu -5 128 4 2529 160 72 41 chr9 40415383 40415653 -101855791 - MLT1D LTR MaLR 0 505 211 2319 82 3 0 chr9 40415653 40416005 -101855439 - AluSq SINE Alu 0 353 1 2529 160 72 41 chr9 40416005 40416221 -101855223 - MLT1D LTR MaLR -294 211 3 304 265 118 107 chr9 40416293 40416640 -101854804 + L2 LINE L2 2902 3252 -20 345 327 24 68 chr9 40416669 40416917 -101854527 + L1ME4a LINE L1 5645 5881 -240 302 299 77 62 chr9 40417296 40417490 -101853954 + L2 LINE L2 2932 3128 -144 328 331 43 6 chr9 40417529 40417692 -101853752 - MER117 DNA MER1_type -28 169 1 929 119 0 15 chr9 40418694 40418828 -101852616 - FLAM_C SINE Alu 0 133 2 1619 169 0 78 chr9 40419014 40419333 -101852111 - AluJb SINE Alu -18 294 1 844 248 50 21 chr9 40419375 40419608 -101851836 + MIR SINE MIR 25 262 0 205 295 114 29 chr9 40420024 40420129 -101851315 - MIR3 SINE MIR -9 199 86 1680 144 0 127 chr9 40420684 40421038 -101850406 - AluJb SINE Alu -3 309 1 829 273 72 9 chr9 40421158 40421477 -101849967 + Charlie2 DNA MER1_type 2 340 -2442 260 172 9 95 chr9 40421502 40421554 -101849890 + Charlie2 DNA MER1_type 2240 2295 -567 1207 183 96 37 chr9 40421554 40421656 -101849788 - MER2 DNA MER2_type 0 344 249 2275 127 0 9 chr9 40421656 40421971 -101849473 + AluSx SINE Alu 1 312 0 2365 92 3 10 chr9 40421981 40422287 -101849157 + AluSx SINE Alu 1 304 -8 1207 183 96 37 chr9 40422287 40422495 -101848949 - MER2 DNA MER2_type -103 241 4 260 172 9 95 chr9 40422495 40422558 -101848886 + Charlie2 DNA MER1_type 2295 2345 -517 559 122 0 0 chr9 40422784 40422866 -101848578 + AluY SINE Alu 213 294 -17 462 193 198 43 chr9 40422927 40423114 -101848330 + L1MCc LINE L1 253 468 -5955 355 290 136 6 chr9 40423282 40423444 -101848000 + L1MCc LINE L1 814 996 -5427 629 284 111 0 chr9 40423492 40423717 -101847727 + L1MCc LINE L1 1096 1345 -5078 2190 98 0 29 chr9 40423735 40424050 -101847394 - AluSx SINE Alu -6 306 1 24 0 0 0 chr9 40424497 40424521 -101846923 + AT_rich Low_complexity Low_complexity 1 24 0 228 194 139 69 chr9 40424673 40424745 -101846699 - MIR SINE MIR -115 93 17 234 200 22 0 chr9 40425135 40425180 -101846264 - L3 LINE CR1 -323 1254 1209 495 205 98 9 chr9 40425219 40425345 -101846099 + MIR SINE MIR 2 145 -63 384 240 128 9 chr9 40426787 40426819 -101844625 + MIR SINE MIR 3 30 -232 2203 124 0 0 chr9 40426819 40427118 -101844326 + AluSx SINE Alu 2 300 -12 384 240 128 9 chr9 40427118 40427271 -101844173 + MIR SINE MIR 30 261 -1 304 319 80 59 chr9 40427542 40427780 -101843664 - L3b LINE CR1 -144 1439 1197 334 308 77 53 chr9 40428116 40428324 -101843120 + MIR SINE MIR 3 215 -47 * 485 270 81 13 chr9 40428293 40428472 -101842972 + MIR SINE MIR 18 208 -54 2165 92 39 0 chr9 40428585 40428869 -101842575 - AluSq SINE Alu -18 295 1 2298 100 3 3 chr9 40430551 40430850 -101840594 + AluSp SINE Alu 1 299 -14 263 291 0 43 chr9 40431015 40431063 -101840381 + LTR67 LTR ERVL 440 551 -6 392 159 14 0 chr9 40431063 40431132 -101840312 + MLT1K LTR MaLR 513 582 -6 187 182 18 73 chr9 40431316 40431371 -101840073 + MIR SINE MIR 23 74 -188 2102 133 0 17 chr9 40432084 40432221 -101839223 + AluSx SINE Alu 1 139 -173 1973 154 0 7 chr9 40432221 40432520 -101838924 + AluSx SINE Alu 1 297 -15 2102 133 0 17 chr9 40432520 40432682 -101838762 + AluSx SINE Alu 139 295 -17 1153 131 51 11 chr9 40432929 40432949 -101838495 + AluSg/x SINE Alu 112 130 -180 2595 51 3 0 chr9 40432949 40433245 -101838199 + AluY SINE Alu 1 297 -14 1153 131 51 11 chr9 40433245 40433400 -101838044 + AluSg/x SINE Alu 130 294 -16 2200 96 3 3 chr9 40433483 40433765 -101837679 - AluSp SINE Alu -16 297 16 3991 162 35 35 chr9 40433791 40434680 -101836764 - Charlie1 DNA MER1_type -259 2502 1614 293 260 96 10 chr9 40434821 40434925 -101836519 + LTR67 LTR ERVL 442 554 -3 1856 160 17 0 chr9 40435433 40435727 -101835717 + AluJb SINE Alu 6 304 -8 214 240 300 10 chr9 40436155 40436255 -101835189 - L2 LINE L2 -5 3308 3180 2148 122 0 3 chr9 40436717 40437011 -101834433 + AluJb SINE Alu 11 303 -9 488 170 30 40 chr9 40437017 40437117 -101834327 + FLAM_C SINE Alu 31 129 -14 4437 141 93 12 chr9 40437228 40437992 -101833452 - LTR1B LTR ERV1 0 826 1 541 302 74 68 chr9 40439017 40439355 -101832089 - MLT1K LTR MaLR -174 414 75 1632 144 39 0 chr9 40439491 40439747 -101831697 + AluJo SINE Alu 15 280 -32 656 279 79 17 chr9 40440057 40440437 -101831007 + LTR16A1 LTR ERVL 78 457 0 1318 198 86 36 chr9 40440705 40441233 -101830211 + LTR8A LTR ERV1 1 577 -150 2073 130 38 0 chr9 40441377 40441670 -101829774 - AluSx SINE Alu -8 304 1 1312 154 0 26 chr9 40441746 40441973 -101829471 - AluJb SINE Alu -5 307 87 348 164 68 82 chr9 40441977 40442077 -101829367 - HAL1 LINE L1 -92 2415 2316 2265 79 50 0 chr9 40442077 40442357 -101829087 - AluSx SINE Alu -17 295 2 348 164 68 82 chr9 40442357 40442402 -101829042 - HAL1 LINE L1 -191 2316 2272 1129 176 95 91 chr9 40442528 40442641 -101828803 + Charlie1b DNA MER1_type 1 112 -2649 3254 138 77 31 chr9 40442641 40443226 -101828218 - LTR9 LTR ERV1 0 612 1 2060 142 16 7 chr9 40443236 40443539 -101827905 - AluSx SINE Alu -6 306 1 1129 176 95 91 chr9 40443539 40443722 -101827722 + Charlie1b DNA MER1_type 120 301 -2460 808 154 15 0 chr9 40443722 40443852 -101827592 - FLAM_C SINE Alu -1 132 1 1129 176 95 91 chr9 40443852 40443886 -101827558 + Charlie1b DNA MER1_type 301 333 -2428 2373 89 3 0 chr9 40443886 40444190 -101827254 - AluSc SINE Alu -4 305 1 1129 176 95 91 chr9 40444190 40444255 -101827189 + Charlie1b DNA MER1_type 333 411 -112 763 209 0 8 chr9 40444947 40445081 -101826363 - FLAM_C SINE Alu 0 133 1 252 276 114 16 chr9 40445236 40445359 -101826085 + MIR SINE MIR 127 261 -1 842 141 96 0 chr9 40445360 40445495 -101825949 + FRAM SINE Alu 21 168 -8 1900 124 103 26 chr9 40445564 40445912 -101825532 + THE1C LTR MaLR 1 375 0 28 0 0 0 chr9 40446790 40446818 -101824626 + AT_rich Low_complexity Low_complexity 1 28 0 1601 204 0 19 chr9 40446827 40447136 -101824308 - AluSx SINE Alu -9 303 1 1518 222 174 67 chr9 40447177 40447287 -101824157 - HAL1 LINE L1 -63 2444 2347 1788 125 27 30 chr9 40447287 40447584 -101823860 - AluJb SINE Alu -6 306 11 1518 222 174 67 chr9 40447584 40448344 -101823100 - HAL1 LINE L1 -160 2347 1480 357 282 84 69 chr9 40448349 40448455 -101822989 - HAL1 LINE L1 -1115 1392 1280 2325 90 0 7 chr9 40448455 40448756 -101822688 + AluSx SINE Alu 1 299 -13 357 282 84 69 chr9 40448756 40448851 -101822593 - HAL1 LINE L1 -1227 1280 1188 1112 174 5 0 chr9 40448852 40449021 -101822423 - AluJb SINE Alu -10 302 130 1753 152 25 11 chr9 40449021 40449304 -101822140 - AluJb SINE Alu -21 291 5 1112 174 5 0 chr9 40449304 40449318 -101822126 - AluJb SINE Alu -182 130 118 866 221 84 67 chr9 40449333 40449607 -101821837 - HAL1 LINE L1 -2144 363 80 2002 100 82 7 chr9 40449607 40449887 -101821557 - AluSx SINE Alu -11 301 1 866 221 84 67 chr9 40449887 40449969 -101821475 - HAL1 LINE L1 -2427 80 1 326 161 11 151 chr9 40455672 40455765 -101815679 - FAM SINE Alu -8 167 86 720 244 26 6 chr9 40455765 40455921 -101815523 - FAM SINE Alu -16 159 1 2034 150 0 3 chr9 40456545 40456839 -101814605 + AluJb SINE Alu 1 293 -19 667 230 0 0 chr9 40457018 40457144 -101814300 + FLAM_A SINE Alu 1 126 -7 753 164 55 0 chr9 40457217 40457345 -101814099 - AluJo SINE Alu -176 136 2 1825 168 11 0 chr9 40457701 40457975 -101813469 - AluJb SINE Alu -25 287 11 849 172 23 29 chr9 40459251 40459425 -101812019 + MER5A DNA MER1_type 11 183 -6 2351 90 0 0 chr9 40459436 40459726 -101811718 + AluSx SINE Alu 16 305 -7 601 229 291 3 chr9 40459781 40460131 -101811313 - LTR50 LTR ERVL -343 452 2 2223 133 0 0 chr9 40460256 40460557 -101810887 - AluSg SINE Alu -9 301 1 500 206 27 98 chr9 40461114 40461298 -101810146 + MIR SINE MIR 56 226 -36 220 231 44 44 chr9 40462668 40462759 -101808685 + MER91A DNA MER1_type 58 148 -48 376 272 252 7 chr9 40463574 40463721 -101807723 - L3 LINE CR1 -551 1026 844 388 251 140 58 chr9 40464662 40464833 -101806611 - MIR3 SINE MIR -7 201 17 2133 135 0 3 chr9 40465097 40465400 -101806044 - AluJb SINE Alu -10 302 1 543 237 95 9 chr9 40465419 40465692 -101805752 - MER46C DNA MER2_type 0 338 1 2185 129 0 10 chr9 40465984 40466287 -101805157 - AluSg SINE Alu -10 300 1 352 230 71 53 chr9 40466635 40466748 -101804696 + MIR SINE MIR 92 206 -56 284 258 141 8 chr9 40467175 40467303 -101804141 - MIR SINE MIR -112 150 6 240 179 75 0 chr9 40467653 40467720 -101803724 - MIR SINE MIR -89 119 48 516 280 70 25 chr9 40468969 40469169 -101802275 + MIR SINE MIR 37 245 -17 1823 143 14 14 chr9 40469181 40469468 -101801976 + AluJo SINE Alu 1 287 -25 1805 158 6 29 chr9 40469482 40469798 -101801646 + AluJo SINE Alu 1 309 -3 604 267 77 17 chr9 40470610 40470924 -101800520 + MLT1G3 LTR MaLR 175 590 -5 411 145 241 0 chr9 40470988 40471071 -101800373 + 5S rRNA rRNA 9 111 -10 344 278 147 61 chr9 40471095 40471293 -101800151 + L1ME3A LINE L1 5170 5384 -762 2299 108 27 0 chr9 40471293 40471589 -101799855 + AluSx SINE Alu 1 304 -8 821 213 191 11 chr9 40471644 40471917 -101799527 + L1ME3A LINE L1 5743 6064 -106 191 242 274 57 chr9 40472306 40472430 -101799014 - L2 LINE L2 -201 3071 2921 336 24 0 0 chr9 40472759 40472800 -101798644 + (TG)n Simple_repeat Simple_repeat 2 42 0 2296 113 6 3 chr9 40472990 40473301 -101798143 + AluSq SINE Alu 1 312 -1 675 126 0 0 chr9 40473319 40473414 -101798030 - FLAM_A SINE Alu -26 116 22 199 214 0 54 chr9 40473511 40473567 -101797877 - MIR SINE MIR -55 153 101 315 205 32 22 chr9 40474624 40474735 -101796709 + (TA)n Simple_repeat Simple_repeat 2 117 -71 2331 105 0 3 chr9 40474735 40475041 -101796403 - AluSx SINE Alu -7 305 1 315 205 32 22 chr9 40475041 40475114 -101796330 + (TA)n Simple_repeat Simple_repeat 117 188 0 231 253 0 42 chr9 40475114 40475209 -101796235 + L1ME4a LINE L1 5926 6016 -105 207 242 147 32 chr9 40475443 40475538 -101795906 + L2 LINE L2 3203 3308 -5 597 184 0 20 chr9 40475538 40475690 -101795754 + GA-rich Low_complexity Low_complexity 3 151 0 2137 108 0 10 chr9 40475880 40476194 -101795250 + AluSx SINE Alu 1 311 0 411 357 88 17 chr9 40476198 40476492 -101794952 - L1ME4a LINE L1 -92 6029 5715 275 273 0 0 chr9 40476779 40476845 -101794599 - MER5C DNA MER1_type -257 67 2 253 359 0 22 chr9 40477299 40477391 -101794053 - L2 LINE L2 -566 2748 2659 554 237 49 73 chr9 40477525 40477868 -101793576 + MLT1H LTR MaLR 120 549 0 278 220 232 30 chr9 40478791 40478959 -101792485 + MIR3 SINE MIR 2 203 -5 368 248 91 16 chr9 40479447 40479568 -101791876 - MIR SINE MIR -52 210 81 864 55 0 0 chr9 40479617 40479727 -101791717 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 704 148 33 8 chr9 40479727 40479844 -101791600 - FLAM_C SINE Alu -12 121 2 805 244 47 63 chr9 40480396 40480561 -101790883 - LTR16A LTR ERVL -54 396 230 2225 117 0 13 chr9 40480561 40480861 -101790583 + AluSx SINE Alu 1 296 -16 805 244 47 63 chr9 40480861 40481076 -101790368 - LTR16A LTR ERVL -220 230 22 191 298 67 19 chr9 40481122 40481226 -101790218 + MIR SINE MIR 143 251 -11 310 270 60 0 chr9 40481300 40481400 -101790044 - L3 LINE CR1 -78 1499 1394 3192 154 13 83 chr9 40481401 40481940 -101789504 - L1MB3 LINE L1 0 6183 5608 2322 94 0 0 chr9 40481940 40482226 -101789218 + AluSx SINE Alu 12 297 -15 3192 154 13 83 chr9 40482226 40482243 -101789201 - L1MB3 LINE L1 -575 5608 5591 1834 156 13 17 chr9 40482243 40482545 -101788899 - AluJo SINE Alu 0 312 12 3192 154 13 83 chr9 40482545 40482664 -101788780 - L1MB3 LINE L1 -592 5591 5554 243 88 0 0 chr9 40482769 40482803 -101788641 + (T)n Simple_repeat Simple_repeat 1 34 0 3461 118 96 2 chr9 40482904 40483498 -101787946 - L1MA4A LINE L1 -198 6105 5456 362 297 8 34 chr9 40483504 40483622 -101787822 + L2 LINE L2 2332 2446 -868 407 277 186 5 chr9 40483630 40483818 -101787626 + L2 LINE L2 2638 2859 -455 817 183 22 33 chr9 40483998 40484178 -101787266 - AluJo SINE Alu -11 301 124 224 326 15 0 chr9 40484243 40484314 -101787130 + L2 LINE L2 3136 3248 -65 248 250 44 0 chr9 40484336 40484404 -101787040 - MIR SINE MIR -9 253 183 216 231 115 0 chr9 40484411 40484463 -101786981 + L2 LINE L2 3214 3271 -1 445 332 15 40 chr9 40484485 40484684 -101786760 - L3 LINE CR1 -134 1443 1250 180 303 101 17 chr9 40535648 40535767 -101735677 + L2 LINE L2 2551 2679 -635 257 154 0 0 chr9 40536622 40536661 -101734783 + L2 LINE L2 3221 3259 -13 2031 128 0 0 chr9 40536757 40537053 -101734391 + AluSx SINE Alu 7 302 -10 561 323 36 5 chr9 40537587 40537779 -101733665 + MIR SINE MIR 62 259 -3 186 372 23 0 chr9 40540452 40540538 -101730906 - L2 LINE L2 0 3313 3226 320 287 75 26 chr9 40541261 40541575 -101729869 - LTR33 LTR ERVL -8 513 92 272 319 0 0 chr9 40543141 40543213 -101728231 + MER5A DNA MER1_type 1 72 -117 1706 107 118 7 chr9 40543216 40543320 -101728124 + AluSg SINE Alu 1 92 -218 2201 103 0 6 chr9 40543320 40543631 -101727813 + AluSx SINE Alu 1 309 -3 1706 107 118 7 chr9 40543631 40543797 -101727647 + AluSg SINE Alu 92 301 -9 1330 189 4 7 chr9 40543813 40544083 -101727361 + AluJo SINE Alu 34 302 -10 414 271 16 8 chr9 40544083 40544205 -101727239 + MER5A DNA MER1_type 67 189 0 1107 158 13 35 chr9 40544735 40544963 -101726481 - AluJo SINE Alu -3 309 87 254 241 0 48 chr9 40545192 40545275 -101726169 - L2 LINE L2 0 3313 3235 228 211 18 18 chr9 40545701 40545758 -101725686 + GA-rich Low_complexity Low_complexity 4 60 0 220 306 27 63 chr9 40545987 40546098 -101725346 + MIR SINE MIR 38 144 -64 876 192 68 0 chr9 40546114 40546192 -101725252 + MER5A DNA MER1_type 1 72 -117 2281 91 0 0 chr9 40546192 40546489 -101724955 + AluSx SINE Alu 1 297 -15 876 192 68 0 chr9 40546489 40546587 -101724857 + MER5A DNA MER1_type 72 189 0 1592 224 14 16 chr9 40547107 40547473 -101723971 - MLT1A1 LTR MaLR 0 365 1 277 238 113 25 chr9 40547477 40547557 -101723887 + HsTC2 DNA Tc2 1 87 -1811 1689 153 3 0 chr9 40547617 40547927 -101723517 - AluSx SINE Alu 0 312 30 1868 169 0 3 chr9 40548873 40549180 -101722264 - AluJo SINE Alu -6 306 1 335 322 108 5 chr9 40549393 40549607 -101721837 - L1ME4a LINE L1 -230 5891 5656 1532 248 62 57 chr9 40549607 40550136 -101721308 - MLT1K LTR MaLR 0 588 57 24 0 0 0 chr9 40550183 40550207 -101721237 + AT_rich Low_complexity Low_complexity 1 24 0 306 243 43 0 chr9 40550212 40550282 -101721162 + L1MC4 LINE L1 6636 6708 -1334 1952 117 3 26 chr9 40550307 40550616 -101720828 - AluSx SINE Alu -10 302 1 335 271 17 25 chr9 40550617 40550735 -101720709 - L1ME4a LINE L1 -515 5606 5490 408 124 191 22 chr9 40550809 40550852 -101720592 + MER63 DNA MER1_type 1 35 -801 1795 174 0 6 chr9 40550852 40551163 -101720281 + AluJo SINE Alu 1 309 -3 408 124 191 22 chr9 40551163 40551208 -101720236 + MER63 DNA MER1_type 35 730 -106 1749 230 81 82 chr9 40551256 40552031 -101719413 - HAL1 LINE L1 -78 2429 1654 1386 98 10 0 chr9 40552031 40552225 -101719219 - L1PA8A LINE L1 0 6131 5936 1749 230 81 82 chr9 40552225 40552374 -101719070 - HAL1 LINE L1 -853 1654 1506 235 258 55 49 chr9 40554646 40554663 -101716781 - L1MA10 LINE L1 -1 6333 6317 1220 179 95 15 chr9 40554663 40554936 -101716508 - L1ME1 LINE L1 -8 6158 5864 223 317 10 58 chr9 40554957 40555061 -101716383 + MIR SINE MIR 93 191 -71 2100 89 4 0 chr9 40555239 40555648 -101715796 - AluSx SINE Alu 0 410 1 2429 207 82 13 chr9 40556195 40556732 -101714712 - MER119 DNA MER1_type 0 583 10 190 333 42 73 chr9 40556821 40556917 -101714527 + L2 LINE L2 3159 3251 -21 846 177 0 0 chr9 40557029 40557176 -101714268 - AluJb SINE Alu -105 207 61 396 316 46 13 chr9 40557290 40557470 -101713974 + MIR SINE MIR 25 211 -51 1589 161 0 25 chr9 40558158 40558443 -101713001 - AluJb SINE Alu -14 298 21 186 167 0 0 chr9 40558510 40558546 -101712898 + GA-rich Low_complexity Low_complexity 3 38 0 663 281 129 9 chr9 40558617 40558834 -101712610 - MIR SINE MIR 0 262 20 272 247 31 52 chr9 40559453 40559550 -101711894 + L2 LINE L2 2917 3011 -261 591 204 227 0 chr9 40559559 40559735 -101711709 + MIR SINE MIR 39 254 -8 1262 149 13 120 chr9 40559861 40560236 -101711208 - L1MDa LINE L1 -3933 2607 2273 508 333 69 56 chr9 40560389 40560869 -101710575 - HAL1 LINE L1 -1205 1302 817 538 320 96 6 chr9 40561050 40561206 -101710238 + MER91A DNA MER1_type 5 174 -22 317 246 29 0 chr9 40561198 40561267 -101710177 + MER91A DNA MER1_type 120 190 0 * 425 242 81 67 chr9 40561807 40561956 -101709488 + MIR SINE MIR 47 197 -65 431 310 13 13 chr9 40563018 40563176 -101708268 - MIR3 SINE MIR -3 205 48 207 162 27 0 chr9 40563434 40563471 -101707973 + L2 LINE L2 3276 3313 0 262 319 219 18 chr9 40563487 40563656 -101707788 - MIR3 SINE MIR -2 206 4 2337 57 3 10 chr9 40564360 40564661 -101706783 + AluY SINE Alu 1 299 -12 395 295 31 23 chr9 40565059 40565188 -101706256 + MIR SINE MIR 56 185 -77 644 285 27 11 chr9 40565235 40565421 -101706023 - MIR SINE MIR -68 194 6 509 348 132 19 chr9 40565447 40566037 -101705407 - L2 LINE L2 -411 2903 2247 411 56 28 14 chr9 40566371 40566442 -101705002 - L1MD2 LINE L1 -1 6358 6287 574 299 109 50 chr9 40566995 40567316 -101704128 + L2 LINE L2 2913 3252 -20 234 294 84 42 chr9 40567378 40567592 -101703852 - L2 LINE L2 -1121 2193 1971 206 247 37 12 chr9 40567738 40567819 -101703625 + MIR SINE MIR 49 131 -77 27 81 0 0 chr9 40567938 40568000 -101703444 + GC_rich Low_complexity Low_complexity 1 62 0 26 0 0 0 chr9 40568031 40568057 -101703387 + GC_rich Low_complexity Low_complexity 1 26 0 286 214 110 81 chr9 40568814 40568987 -101702457 + MIR3 SINE MIR 16 193 -15 191 308 31 0 chr9 40569891 40569956 -101701488 - L2 LINE L2 -63 3250 3184 363 309 216 10 chr9 40570249 40570443 -101701001 + MIR SINE MIR 29 262 0 1071 163 19 47 chr9 40570890 40571105 -101700339 + AluJo SINE Alu 86 294 -18 691 256 105 43 chr9 40571179 40571503 -101699941 - L2 LINE L2 -1 3312 2969 974 285 14 2 chr9 40571532 40571782 -101699662 + MIR SINE MIR 3 252 -10 311 328 49 16 chr9 40571770 40571892 -101699552 - L2 LINE L2 -269 3003 2878 * 183 42 0 0 chr9 40572038 40572062 -101699382 + (CTG)n Simple_repeat Simple_repeat 2 25 0 2272 88 0 3 chr9 40572629 40572935 -101698509 - AluSg SINE Alu -5 305 1 188 300 108 58 chr9 40572963 40573083 -101698361 + L2 LINE L2 2924 3049 -223 511 280 132 47 chr9 40574946 40575264 -101696180 - L3 LINE CR1 -38 1539 1195 184 265 118 20 chr9 40575448 40575550 -101695894 + MIR SINE MIR 26 137 -71 1391 218 125 52 chr9 40575569 40575992 -101695452 - MLT1D LTR MaLR 0 505 43 1531 180 21 18 chr9 40575992 40576297 -101695147 - AluJo SINE Alu 0 306 1 1391 218 125 52 chr9 40576297 40576336 -101695108 - MLT1D LTR MaLR -462 43 8 183 42 0 0 chr9 40577048 40577072 -101694372 + (A)n Simple_repeat Simple_repeat 1 24 0 228 299 175 22 chr9 40577403 40577540 -101693904 - L2 LINE L2 -181 3091 2934 183 250 0 0 chr9 40577592 40577632 -101693812 - MIR3 SINE MIR -15 193 154 190 272 99 0 chr9 40577912 40577993 -101693451 + L2 LINE L2 3142 3230 -42 183 300 0 50 chr9 40578486 40578546 -101692898 + L3 LINE CR1 1197 1253 -324 301 184 40 53 chr9 40578594 40578670 -101692774 + L3 LINE CR1 1257 1331 -246 388 213 157 9 chr9 40578782 40578890 -101692554 + MIR3 SINE MIR 68 191 -17 1597 192 114 43 chr9 40578919 40578948 -101692496 - MSTD LTR MaLR 0 396 370 1109 77 0 184 chr9 40578948 40579181 -101692263 - 7SK RNA RNA -3 190 1 1597 192 114 43 chr9 40579181 40579520 -101691924 - MSTD LTR MaLR -26 370 2 239 258 118 43 chr9 40579527 40579620 -101691824 - L2 LINE L2 -36 3236 3137 241 314 25 41 chr9 40580618 40580739 -101690705 + L2 LINE L2 2897 3015 -257 2269 134 6 6 chr9 40580807 40581149 -101690295 + MER2 DNA MER2_type 2 343 -1 191 339 0 0 chr9 40581162 40581218 -101690226 + L2 LINE L2 3258 3313 0 252 77 0 0 chr9 40581413 40581452 -101689992 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2439 52 13 0 chr9 40581452 40581758 -101689686 - L1PA8 LINE L1 -14 6158 5849 647 232 108 2 chr9 40581986 40582190 -101689254 + L1ME LINE L1 5540 5721 -400 251 277 31 0 chr9 40583399 40583464 -101687980 - L2 LINE L2 -13 3300 3234 1872 152 0 7 chr9 40584194 40584497 -101686947 - AluSx SINE Alu -11 301 1 1673 118 24 37 chr9 40584664 40584960 -101686484 + AluSx SINE Alu 13 304 -8 466 217 25 57 chr9 40585082 40585239 -101686205 + MIR SINE MIR 48 199 -63 468 298 64 21 chr9 40586199 40586387 -101685057 - MIR3 SINE MIR -1 207 12 763 205 114 0 chr9 40586569 40586735 -101684709 + MER5A DNA MER1_type 5 189 0 2480 70 3 6 chr9 40586964 40587277 -101684167 + AluSp SINE Alu 1 312 -1 251 340 44 60 chr9 40587772 40588022 -101683422 - L2 LINE L2 -408 2906 2661 319 317 130 96 chr9 40588697 40588943 -101682501 - L2 LINE L2 -1 3271 3035 2215 114 0 0 chr9 40588943 40589240 -101682204 + AluSx SINE Alu 6 302 -10 319 317 130 96 chr9 40589240 40589268 -101682176 - L2 LINE L2 -237 3035 3009 1167 132 36 59 chr9 40589268 40589488 -101681956 + L1MB8 LINE L1 5964 6178 0 319 317 130 96 chr9 40589488 40589651 -101681793 - L2 LINE L2 -263 3009 2818 926 233 4 75 chr9 40589689 40589906 -101681538 - MIR SINE MIR 0 262 31 2555 78 69 0 chr9 40589906 40590238 -101681206 - THE1A LTR MaLR 0 355 1 13142 81 1 0 chr9 40590238 40591816 -101679628 - THE1A-int LTR MaLR 0 1580 1 2781 94 8 0 chr9 40591816 40592168 -101679276 - THE1A LTR MaLR 0 355 1 926 233 4 75 chr9 40592168 40592201 -101679243 - MIR SINE MIR -228 34 28 386 292 64 81 chr9 40592235 40592398 -101679046 - L2 LINE L2 -556 2758 2594 1917 138 14 0 chr9 40592398 40592688 -101678756 + AluSx SINE Alu 5 298 -14 386 292 64 81 chr9 40592688 40592870 -101678574 - L2 LINE L2 -720 2594 2419 189 267 190 9 chr9 40592980 40593096 -101678348 - MIR3 SINE MIR -7 201 65 291 304 88 55 chr9 40594052 40594233 -101677211 + L2 LINE L2 3037 3223 -49 429 252 148 48 chr9 40594706 40594916 -101676528 - MIR SINE MIR -15 247 17 658 243 36 54 chr9 40595489 40595519 -101675925 + L2 LINE L2 3095 3124 -189 2427 104 0 0 chr9 40595519 40595827 -101675617 - AluSx SINE Alu -3 309 2 658 243 36 54 chr9 40595827 40596018 -101675426 + L2 LINE L2 3124 3312 -1 1596 203 18 6 chr9 40596624 40596954 -101674490 - L1MB8 LINE L1 -6 6172 5839 357 282 43 8 chr9 40596961 40597078 -101674366 - MIR SINE MIR -68 140 20 2015 143 0 9 chr9 40598195 40598510 -101672934 + AluSx SINE Alu 1 312 0 259 200 176 56 chr9 40599007 40599132 -101672312 - L2 LINE L2 -2 3311 3172 278 289 52 10 chr9 40599466 40599563 -101671881 + MIR SINE MIR 91 191 -71 248 316 92 10 chr9 40599772 40599870 -101671574 - MIR3 SINE MIR -91 117 12 581 191 60 2 chr9 40599882 40599999 -101671445 + MER5A DNA MER1_type 33 166 -23 2104 144 11 30 chr9 40600146 40600514 -101670930 - L1MB7 LINE L1 -19 6165 5805 216 204 45 114 chr9 40600657 40600745 -101670699 - MIR SINE MIR -73 189 108 183 313 121 11 chr9 40600786 40600968 -101670476 - L2 LINE L2 -262 3010 2809 535 251 183 6 chr9 40601504 40601679 -101669765 + MIR SINE MIR 48 253 -9 481 367 92 3 chr9 40601726 40602020 -101669424 - L2 LINE L2 -541 2773 2454 1978 145 3 3 chr9 40602023 40602320 -101669124 - AluJb SINE Alu -15 297 1 2419 56 0 30 chr9 40602628 40602932 -101668512 + AluY SINE Alu 1 295 -16 478 262 95 68 chr9 40603382 40603645 -101667799 + L3 LINE CR1 1144 1413 -164 509 334 54 61 chr9 40604276 40604668 -101666776 - L3 LINE CR1 -24 1553 1165 241 316 35 12 chr9 40604968 40605139 -101666305 + L1M3 LINE L1 5267 5441 -730 260 264 33 11 chr9 40605141 40605232 -101666212 + L1MC4a LINE L1 5840 5932 -1876 23 0 0 0 chr9 40605391 40605414 -101666030 + AT_rich Low_complexity Low_complexity 1 23 0 277 208 10 40 chr9 40605416 40605517 -101665927 + (TA)n Simple_repeat Simple_repeat 1 98 0 786 272 65 30 chr9 40605708 40606046 -101665398 + L1ME4a LINE L1 5535 5884 -237 5098 265 91 26 chr9 40606244 40607970 -101663474 - HAL1 LINE L1 -44 2463 596 2170 175 73 5 chr9 40607970 40608341 -101663103 - MSTD LTR MaLR 0 396 1 5098 265 91 26 chr9 40608341 40608545 -101662899 - HAL1 LINE L1 -1911 596 407 1284 163 34 0 chr9 40608638 40608877 -101662567 + L1MD3 LINE L1 7748 7994 -1 2185 98 0 11 chr9 40608889 40609202 -101662242 + AluSx SINE Alu 3 312 0 391 89 119 0 chr9 40609303 40609373 -101662071 - L1MB1 LINE L1 0 6168 6098 197 236 9 0 chr9 40610206 40610312 -101661132 + (CA)n Simple_repeat Simple_repeat 2 108 0 243 313 0 0 chr9 40610511 40610594 -101660850 + (CA)n Simple_repeat Simple_repeat 1 83 0 222 105 0 0 chr9 40610612 40610650 -101660794 + (CA)n Simple_repeat Simple_repeat 2 39 0 207 254 164 0 chr9 40611053 40611108 -101660336 - MIR SINE MIR -59 149 86 499 160 69 137 chr9 40611719 40611894 -101659550 - MER103 DNA DNA -2 164 2 691 169 8 0 chr9 40611938 40612056 -101659388 - L1MB7 LINE L1 -102 6082 5964 812 149 81 7 chr9 40612056 40612204 -101659240 - AluJb SINE Alu -12 300 142 757 120 28 237 chr9 40612204 40612495 -101658949 - L1MB7 LINE L1 -218 5966 5737 387 0 0 0 chr9 40612515 40612558 -101658886 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2188 188 11 0 chr9 40612569 40612941 -101658503 - L1MB7 LINE L1 -433 5751 5376 554 293 158 79 chr9 40613301 40614118 -101657326 + L2 LINE L2 2412 3303 -10 301 157 0 6 chr9 40614936 40615000 -101656444 + AluY SINE Alu 1 42 -259 1796 68 0 17 chr9 40615000 40615237 -101656207 + AluY SINE Alu 79 311 0 2235 104 3 0 chr9 40615475 40615762 -101655682 + AluSg SINE Alu 1 288 -22 276 265 52 102 chr9 40615815 40616140 -101655304 - L1MB7 LINE L1 -1059 5087 4779 2247 109 10 13 chr9 40616190 40616369 -101655075 - AluSx SINE Alu 0 312 133 2333 100 0 10 chr9 40616369 40616679 -101654765 - AluSp SINE Alu -6 307 1 2247 109 10 13 chr9 40616679 40616812 -101654632 - AluSx SINE Alu -179 133 1 2176 122 0 0 chr9 40616962 40617256 -101654188 - AluSx SINE Alu -14 298 5 248 348 11 0 chr9 40617432 40617524 -101653920 + (CA)n Simple_repeat Simple_repeat 2 94 0 285 175 35 18 chr9 40617527 40617584 -101653860 - MER4-int LTR ERV1 -5442 1156 1099 582 258 177 71 chr9 40618981 40619108 -101652336 - L2 LINE L2 -185 3087 2975 492 99 0 0 chr9 40619108 40619179 -101652265 + (TG)n Simple_repeat Simple_repeat 2 72 0 582 258 177 71 chr9 40619179 40619649 -101651795 - L2 LINE L2 -297 2975 2431 283 361 64 68 chr9 40619904 40620170 -101651274 - L2 LINE L2 0 3272 3008 279 361 62 0 chr9 40620627 40620724 -101650720 - L2 LINE L2 -20 3252 3150 2811 159 80 19 chr9 40621153 40621719 -101649725 - L1MB8 LINE L1 -1 6177 5578 1524 148 69 10 chr9 40621814 40622119 -101649325 + Charlie5 DNA MER1_type 2302 2624 0 567 262 47 37 chr9 40622172 40622363 -101649081 + MIR SINE MIR 70 262 0 22 88 0 0 chr9 40622420 40622477 -101648967 + AT_rich Low_complexity Low_complexity 1 57 0 1082 182 141 12 chr9 40622967 40623209 -101648235 - AluSg SINE Alu -13 297 25 1610 150 68 14 chr9 40623391 40623713 -101647731 + AluSx SINE Alu 1 312 0 414 57 0 0 chr9 40624628 40624681 -101646763 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 196 274 20 0 chr9 40624683 40624734 -101646710 - L2 LINE L2 -4 3268 3217 194 271 0 71 chr9 40624746 40624816 -101646628 + L2 LINE L2 2996 3060 -212 241 275 44 44 chr9 40626441 40626532 -101644912 - L2 LINE L2 -27 3245 3155 22 0 0 0 chr9 40626971 40626993 -101644451 + AT_rich Low_complexity Low_complexity 1 22 0 494 172 0 0 chr9 40627043 40627130 -101644314 - FLAM_C SINE Alu -3 140 54 1046 127 0 0 chr9 40627130 40627280 -101644164 + AluSg/x SINE Alu 163 312 0 2264 101 24 0 chr9 40628380 40628676 -101642768 + AluSg SINE Alu 1 303 -7 247 284 101 55 chr9 40629393 40629502 -101641942 + MIR SINE MIR 79 192 -70 612 303 71 64 chr9 40629813 40630051 -101641393 + L1M4 LINE L1 2719 2954 -3192 2108 143 0 0 chr9 40630051 40630351 -101641093 - AluSq SINE Alu -13 300 1 612 303 71 64 chr9 40630351 40630631 -101640813 + L1M4 LINE L1 2954 3241 -2905 334 306 123 13 chr9 40630697 40630998 -101640446 + L1M4 LINE L1 4499 4832 -1314 1304 169 94 12 chr9 40631024 40631278 -101640166 + AluJb SINE Alu 1 275 -37 185 206 0 16 chr9 40631332 40631395 -101640049 + (TA)n Simple_repeat Simple_repeat 1 62 0 2146 116 0 3 chr9 40632272 40632643 -101638801 - AluSx SINE Alu 0 370 1 288 342 92 27 chr9 40632906 40633090 -101638354 - MIR SINE MIR -61 201 6 194 270 0 63 chr9 40633509 40633572 -101637872 - L3 LINE CR1 -151 1426 1368 752 291 87 56 chr9 40633638 40634085 -101637359 - L3 LINE CR1 -357 1220 760 646 302 199 19 chr9 40634594 40634971 -101636473 - L3 LINE CR1 -859 718 274 21 0 0 31 chr9 40634989 40635009 -101636435 + AT_rich Low_complexity Low_complexity 1 21 -10 408 88 0 0 chr9 40635009 40635066 -101636378 + (TG)n Simple_repeat Simple_repeat 2 58 0 21 0 0 31 chr9 40635066 40635077 -101636367 + AT_rich Low_complexity Low_complexity 21 31 0 2196 131 0 0 chr9 40635077 40635375 -101636069 - AluSx SINE Alu -14 298 1 285 302 112 17 chr9 40636271 40636387 -101635057 - MIR3 SINE MIR -9 199 73 273 287 116 31 chr9 40637346 40637475 -101633969 - MIR SINE MIR -122 140 1 594 96 0 0 chr9 40637995 40638078 -101633366 + AluSc SINE Alu 2 84 -225 2412 61 0 17 chr9 40638078 40638374 -101633070 + AluY SINE Alu 1 291 -20 1854 78 0 0 chr9 40638372 40638590 -101632854 + AluSc SINE Alu 71 288 -21 * 821 348 91 27 chr9 40639076 40639634 -101631810 + L1ME4a LINE L1 5354 5947 -174 540 174 20 0 chr9 40639925 40640023 -101631421 + AluSg/x SINE Alu 202 301 -9 1427 132 0 5 chr9 40640102 40640307 -101631137 - AluSg/x SINE Alu -12 298 95 1014 39 0 0 chr9 40640473 40640601 -101630843 - L1PA3 LINE L1 0 6155 6028 1724 160 11 4 chr9 40641271 40641406 -101630038 + AluSx SINE Alu 1 134 -178 2385 101 0 19 chr9 40641406 40641724 -101629720 + AluSx SINE Alu 1 312 0 1724 160 11 4 chr9 40641724 40641863 -101629581 + AluSx SINE Alu 134 277 -35 228 182 0 23 chr9 40642235 40642279 -101629165 - MIR SINE MIR -79 129 87 301 312 11 11 chr9 40643101 40643194 -101628250 + (CA)n Simple_repeat Simple_repeat 2 94 0 524 266 111 35 chr9 40643354 40643580 -101627864 - MIR SINE MIR -18 244 2 189 245 20 20 chr9 40644024 40644073 -101627371 - L2 LINE L2 -2 3270 3222 181 132 79 0 chr9 40644039 40644077 -101627367 - MIR SINE MIR -10 252 212 * 2232 102 0 3 chr9 40644110 40644427 -101627017 + AluSx SINE Alu 1 316 0 249 338 120 22 chr9 40644707 40644932 -101626512 - L2 LINE L2 -350 2964 2718 933 197 161 0 chr9 40644965 40645158 -101626286 - MER58A DNA MER1_type 0 224 1 355 303 62 28 chr9 40645613 40645758 -101625686 - L2 LINE L2 -1 3312 3163 710 255 85 6 chr9 40645771 40645970 -101625474 - MIR SINE MIR -12 250 38 405 289 31 69 chr9 40645987 40646247 -101625197 - L2 LINE L2 -187 3126 2877 2380 104 0 0 chr9 40646374 40646673 -101624771 + AluSx SINE Alu 1 299 -13 327 95 4 13 chr9 40646724 40646790 -101624654 + AluSq/x SINE Alu 87 133 -170 2152 143 0 0 chr9 40646794 40647102 -101624342 + AluSx SINE Alu 1 308 -4 369 208 0 69 chr9 40647735 40647836 -101623608 - MIR SINE MIR -94 168 75 327 250 38 12 chr9 40648273 40648353 -101623091 + L1MC4a LINE L1 5853 5934 -1874 328 290 142 6 chr9 40649059 40649228 -101622216 - MIR3 SINE MIR -6 202 11 2140 148 0 3 chr9 40649283 40649594 -101621850 + AluSx SINE Alu 1 310 -2 245 243 100 0 chr9 40649612 40649682 -101621762 - MIR SINE MIR -65 143 67 440 290 104 5 chr9 40649713 40649913 -101621531 - MIR SINE MIR -3 259 41 302 329 7 48 chr9 40650610 40650756 -101620688 + MER5B DNA MER1_type 9 148 -30 * 360 266 25 57 chr9 40650625 40650783 -101620661 - MER5A DNA MER1_type -23 166 14 227 271 14 14 chr9 40651664 40651734 -101619710 - L2 LINE L2 -15 3257 3188 2215 73 4 7 chr9 40653697 40653972 -101617472 - AluY SINE Alu -15 296 23 235 117 0 33 chr9 40654086 40654146 -101617298 + (CA)n Simple_repeat Simple_repeat 1 58 0 992 102 7 7 chr9 40654328 40654465 -101616979 + AluSp/q SINE Alu 165 301 -12 315 121 0 0 chr9 40654743 40654801 -101616643 + (TG)n Simple_repeat Simple_repeat 1 58 0 2456 95 3 0 chr9 40655457 40655762 -101615682 + AluSq SINE Alu 1 306 -7 1044 208 45 49 chr9 40655973 40656250 -101615194 + MER63B DNA MER1_type 7 284 -778 2203 128 3 0 chr9 40656250 40656554 -101614890 - AluSx SINE Alu -7 305 1 1044 208 45 49 chr9 40656554 40656584 -101614860 + MER63B DNA MER1_type 284 313 -123 249 349 60 36 chr9 40656621 40656787 -101614657 - L2 LINE L2 -153 3119 2950 213 329 67 13 chr9 40657181 40657330 -101614114 - L2 LINE L2 -477 2837 2681 301 293 27 54 chr9 40657478 40657625 -101613819 + MER5A DNA MER1_type 24 166 -23 * 319 254 19 67 chr9 40657509 40657641 -101613803 - MER5A DNA MER1_type -45 144 6 231 270 45 27 chr9 40659031 40659142 -101612302 - L2 LINE L2 -212 3060 2948 378 0 0 0 chr9 40659366 40659408 -101612036 + (CA)n Simple_repeat Simple_repeat 2 43 0 524 293 88 92 chr9 40659524 40660065 -101611379 + L2 LINE L2 2726 3272 0 198 0 0 0 chr9 40660303 40660325 -101611119 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 258 209 7 196 chr9 40660474 40660532 -101610912 - MER5A DNA MER1_type -9 180 167 2250 132 0 0 chr9 40660532 40660835 -101610609 + AluSx SINE Alu 1 303 -9 258 209 7 196 chr9 40660835 40660929 -101610515 - MER5A DNA MER1_type -22 167 57 190 294 24 71 chr9 40661153 40661238 -101610206 - MIR SINE MIR -14 248 168 351 0 0 0 chr9 40661436 40661475 -101609969 + (T)n Simple_repeat Simple_repeat 1 39 0 913 178 18 0 chr9 40661666 40661829 -101609615 + FRAM SINE Alu 1 166 0 2197 97 38 3 chr9 40661832 40662121 -101609323 + AluSx SINE Alu 1 299 -13 401 220 129 38 chr9 40662127 40662259 -101609185 - MIR SINE MIR -106 156 13 258 250 180 40 chr9 40664858 40664958 -101606486 - L2 LINE L2 -4 3268 3155 364 271 12 0 chr9 40665483 40665568 -101605876 + MIR SINE MIR 87 172 -90 2314 109 0 7 chr9 40666300 40666602 -101604842 - AluSq SINE Alu -13 300 1 267 185 259 0 chr9 40666609 40666690 -101604754 + MIR SINE MIR 50 151 -111 223 214 0 0 chr9 40667519 40667561 -101603883 - L2 LINE L2 -10 3303 3262 482 324 188 21 chr9 40667600 40668026 -101603418 - L2 LINE L2 -12 3301 2805 2475 53 13 0 chr9 40668410 40668709 -101602735 + AluY SINE Alu 1 303 -8 877 120 0 0 chr9 40668773 40668890 -101602554 + AluJb SINE Alu 1 117 -195 26 64 0 0 chr9 40668890 40668937 -101602507 + AT_rich Low_complexity Low_complexity 1 47 0 799 153 51 56 chr9 40669423 40669619 -101601825 - MER4E LTR ERV1 -428 351 157 2091 129 35 31 chr9 40669619 40670075 -101601369 + pTR5 LTR ERV1 743 1200 -1238 436 145 195 101 chr9 40670088 40670247 -101601197 + MER4D LTR ERV1 76 249 -623 1821 182 114 47 chr9 40670255 40670745 -101600699 - LTR12 LTR ERV1 0 714 192 194 260 83 10 chr9 40671609 40671705 -101599739 + L2 LINE L2 2393 2495 -819 368 219 24 0 chr9 40671863 40671945 -101599499 - L1MC2 LINE L1 -9 6335 6252 477 272 122 0 chr9 40672055 40672235 -101599209 + L2 LINE L2 2855 3056 -257 221 333 13 0 chr9 40672959 40673034 -101598410 - MIR SINE MIR -86 122 47 340 254 169 0 chr9 40673134 40673252 -101598192 - MIR SINE MIR -37 225 88 221 279 15 15 chr9 40673585 40673653 -101597791 + L3 LINE CR1 1337 1404 -173 1984 136 7 39 chr9 40674250 40674559 -101596885 + AluJb SINE Alu 1 299 -13 206 336 122 15 chr9 40674613 40674744 -101596700 - MIR3 SINE MIR -59 149 5 547 226 40 8 chr9 40676642 40676766 -101594678 + L2 LINE L2 3185 3312 -1 1196 295 185 10 chr9 40676927 40677928 -101593516 + L2 LINE L2 2038 3219 -94 999 193 6 0 chr9 40679608 40679779 -101591665 + FRAM SINE Alu 1 171 -5 1922 157 7 7 chr9 40679801 40680100 -101591344 + AluJo SINE Alu 1 299 -13 491 302 100 79 chr9 40680412 40680615 -101590829 + L2 LINE L2 2839 3036 -277 2361 99 10 0 chr9 40680615 40680919 -101590525 - AluSx SINE Alu 0 312 6 491 302 100 79 chr9 40680919 40681156 -101590288 + L2 LINE L2 3036 3288 -25 183 211 39 19 chr9 40681763 40681815 -101589629 - MIR SINE MIR -65 143 91 393 244 110 8 chr9 40682062 40682189 -101589255 - MIR3 SINE MIR -26 182 43 355 335 133 21 chr9 40682412 40682794 -101588650 + L3 LINE CR1 1083 1507 -70 219 202 78 0 chr9 40683864 40683942 -101587502 + MIR SINE MIR 71 137 -71 202 279 184 27 chr9 40684088 40684235 -101587209 + MIR3 SINE MIR 39 208 0 198 344 82 45 chr9 40684974 40685326 -101586118 - L2 LINE L2 -5 3267 2903 226 305 37 37 chr9 40685559 40685641 -101585803 - MIR3 SINE MIR -18 190 109 226 322 53 66 chr9 40687276 40687428 -101584016 + MIR SINE MIR 19 168 -40 575 251 139 27 chr9 40688543 40688766 -101582678 + MIR SINE MIR 9 256 -6 194 246 43 29 chr9 40689043 40689112 -101582332 + MIR SINE MIR 83 152 -110 259 326 47 0 chr9 40689278 40689364 -101582080 - MIR3 SINE MIR -24 184 95 281 281 0 0 chr9 40689907 40689971 -101581473 + MIR SINE MIR 41 104 -104 280 312 55 22 chr9 40690599 40690758 -101580686 - MIR3 SINE MIR -61 147 8 194 336 106 9 chr9 40692085 40692198 -101579246 - MIR3 SINE MIR -20 188 65 25 0 0 0 chr9 40692664 40692689 -101578755 + AT_rich Low_complexity Low_complexity 1 25 0 345 164 16 0 chr9 40693269 40693330 -101578114 + U7 snRNA snRNA 1 62 -1 208 260 40 0 chr9 40693486 40693536 -101577908 + L2 LINE L2 3207 3258 -14 333 287 79 18 chr9 40693628 40693792 -101577652 + L1ME4a LINE L1 5937 6110 -11 1958 80 0 50 chr9 40693794 40694082 -101577362 - AluSx SINE Alu 0 310 36 517 222 179 31 chr9 40694258 40694420 -101577024 + MIR SINE MIR 5 190 -72 1879 136 0 11 chr9 40695444 40695716 -101575728 + AluJo SINE Alu 8 276 -36 513 338 143 7 chr9 40695959 40696384 -101575060 + L3 LINE CR1 1049 1532 -45 292 190 17 0 chr9 40696384 40696442 -101575002 - MER5A DNA MER1_type -3 186 128 241 214 225 34 chr9 40696731 40696820 -101574624 - MIR3 SINE MIR -34 174 112 4416 182 28 41 chr9 40697043 40697123 -101574321 - L1MA9 LINE L1 -29 6283 6204 1573 202 0 11 chr9 40697123 40697400 -101574044 + AluJo SINE Alu 1 274 -38 4416 182 28 41 chr9 40697400 40697734 -101573710 - L1MA9 LINE L1 -108 6204 5867 2427 86 30 0 chr9 40697734 40698038 -101573406 - AluSq SINE Alu 0 313 1 4416 182 28 41 chr9 40698038 40699352 -101572092 - L1MA9 LINE L1 -445 5867 4579 278 272 80 20 chr9 40699733 40699881 -101571563 + MIR3 SINE MIR 94 250 -12 1927 158 13 7 chr9 40699918 40700216 -101571228 - AluJb SINE Alu -12 300 1 206 307 40 0 chr9 40701327 40701402 -101570042 - MIR SINE MIR -70 192 115 563 184 158 53 chr9 40701427 40701617 -101569827 - MER20 DNA MER1_type -9 210 1 197 178 22 0 chr9 40702076 40702121 -101569323 + GA-rich Low_complexity Low_complexity 2 47 0 211 217 50 0 chr9 40702945 40703005 -101568439 + MIR SINE MIR 85 147 -115 241 298 71 10 chr9 40703448 40703581 -101567863 + MIR SINE MIR 37 183 -69 288 130 0 0 chr9 40704879 40704925 -101566519 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 386 329 116 23 chr9 40705149 40705365 -101566079 + MIR SINE MIR 27 262 0 250 247 56 11 chr9 40706877 40706966 -101564478 + MIR SINE MIR 33 125 -83 191 284 45 0 chr9 40707148 40707215 -101564229 - L3 LINE CR1 -2 1575 1506 415 230 171 0 chr9 40709411 40709563 -101561881 - MLT1J LTR MaLR -333 178 1 540 0 0 0 chr9 40709702 40709762 -101561682 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 207 114 0 0 chr9 40710705 40710740 -101560704 + (TG)n Simple_repeat Simple_repeat 1 35 0 232 289 26 0 chr9 40711311 40711387 -101560057 - MIR SINE MIR -121 141 64 267 146 0 73 chr9 40711506 40711616 -101559828 + (CA)n Simple_repeat Simple_repeat 1 102 0 1738 170 7 10 chr9 40714144 40714444 -101557000 - AluJb SINE Alu 0 312 14 288 254 250 41 chr9 40714676 40714896 -101556548 - L2 LINE L2 -4 3268 3003 192 231 0 0 chr9 40715948 40716000 -101555444 - MIR SINE MIR -80 128 77 2359 93 3 0 chr9 40716702 40717002 -101554442 + AluSx SINE Alu 1 301 -11 2177 109 28 0 chr9 40717023 40717308 -101554136 + AluSx SINE Alu 1 293 -19 416 265 137 17 chr9 40717349 40717604 -101553840 - L1ME4a LINE L1 -57 6064 5841 2393 101 0 0 chr9 40717604 40717902 -101553542 - AluSq SINE Alu -15 298 1 416 265 137 17 chr9 40717902 40718108 -101553336 - L1ME4a LINE L1 -280 5841 5517 276 317 117 0 chr9 40718547 40718692 -101552752 + MIR SINE MIR 66 227 -35 2112 98 0 0 chr9 40719044 40719309 -101552135 + AluSq SINE Alu 1 265 -48 283 208 0 0 chr9 40719521 40719574 -101551870 + L2 LINE L2 3256 3308 -5 1862 149 0 36 chr9 40719691 40719992 -101551452 + AluJb SINE Alu 1 290 -22 2339 113 0 3 chr9 40719994 40720305 -101551139 + AluSx SINE Alu 1 310 -2 218 330 110 10 chr9 40720613 40720726 -101550718 - MIR SINE MIR -61 147 25 325 333 0 0 chr9 40720778 40720874 -101550570 - MER5A DNA MER1_type -44 145 50 193 276 51 51 chr9 40721729 40721827 -101549617 - MER5A DNA MER1_type -6 183 86 510 165 0 51 chr9 40721834 40722010 -101549434 + (TA)n Simple_repeat Simple_repeat 1 167 0 1859 135 38 0 chr9 40722016 40722283 -101549161 - AluJb SINE Alu -23 289 13 234 230 294 48 chr9 40722325 40722451 -101548993 - MER5A DNA MER1_type 0 189 33 452 184 68 142 chr9 40722538 40722728 -101548716 + MER5B DNA MER1_type 3 178 0 234 264 99 99 chr9 40723458 40723791 -101547653 - L2 LINE L2 -5 3267 2935 188 281 51 84 chr9 40723825 40724003 -101547441 - L2 LINE L2 -463 2851 2680 264 332 57 0 chr9 40725263 40725381 -101546063 - MIR SINE MIR -64 144 20 260 230 35 69 chr9 40726417 40726504 -101544940 - MIR3 SINE MIR -14 194 111 2317 93 7 3 chr9 40728569 40728860 -101542584 + AluSx SINE Alu 1 292 -20 1669 153 17 33 chr9 40728879 40729179 -101542265 + AluJb SINE Alu 5 299 -13 1378 122 146 76 chr9 40729330 40729573 -101541871 + AluJo SINE Alu 5 230 -82 2091 120 3 17 chr9 40729573 40729873 -101541571 - AluSc SINE Alu -13 296 1 1378 122 146 76 chr9 40729873 40729900 -101541544 + AluJo SINE Alu 230 254 -58 848 143 0 0 chr9 40729900 40730033 -101541411 + FLAM_C SINE Alu 1 133 0 1378 122 146 76 chr9 40730033 40730049 -101541395 + AluJo SINE Alu 254 312 0 254 329 46 69 chr9 40730097 40730386 -101541058 + L1 LINE L1 3422 3697 -2449 1724 162 62 0 chr9 40730386 40730658 -101540786 + AluJo SINE Alu 14 302 -10 254 329 46 69 chr9 40730658 40730845 -101540599 + L1 LINE L1 3697 3887 -2259 572 300 103 21 chr9 40730855 40731088 -101540356 - MIR SINE MIR -3 259 8 2025 140 3 40 chr9 40731292 40731468 -101539976 - AluSx SINE Alu -2 310 150 2498 81 3 0 chr9 40731468 40731764 -101539680 - AluSp SINE Alu -16 297 1 2025 140 3 40 chr9 40731764 40731909 -101539535 - AluSx SINE Alu -162 150 1 31 18 0 53 chr9 40732351 40732408 -101539036 + AT_rich Low_complexity Low_complexity 1 54 0 580 304 97 62 chr9 40732419 40732683 -101538761 + L1 LINE L1 4110 4396 -1750 827 146 0 0 chr9 40732683 40732813 -101538631 + FLAM_C SINE Alu 1 130 -3 580 304 97 62 chr9 40732813 40732982 -101538462 + L1 LINE L1 4396 4558 -1588 2219 119 0 0 chr9 40733231 40733524 -101537920 - AluSq SINE Alu -20 293 1 1924 149 7 0 chr9 40733944 40734219 -101537225 + AluSx SINE Alu 21 297 -15 1764 183 7 3 chr9 40734540 40734830 -101536614 + AluJo SINE Alu 4 294 -18 3288 94 25 0 chr9 40734914 40735402 -101536042 + L1PA13 LINE L1 5646 6145 -18 2200 101 10 10 chr9 40735413 40735720 -101535724 + AluSq SINE Alu 1 307 -6 1988 145 7 23 chr9 40736860 40736998 -101534446 + AluJb SINE Alu 1 140 -172 2271 124 0 0 chr9 40736998 40737297 -101534147 + AluSx SINE Alu 1 299 -13 1988 145 7 23 chr9 40737297 40737468 -101533976 + AluJb SINE Alu 140 305 -7 5802 43 15 1 chr9 40738172 40738842 -101532602 - SVA Other Other -3 1383 705 683 160 56 7 chr9 40739200 40739327 -101532117 - L1M3 LINE L1 -427 5744 5608 1467 201 35 7 chr9 40739327 40739616 -101531828 - AluJo SINE Alu -15 297 1 683 160 56 7 chr9 40739616 40739632 -101531812 - L1M3 LINE L1 -563 5608 5594 1725 181 3 3 chr9 40739647 40739935 -101531509 - AluJo SINE Alu -24 288 1 287 241 23 0 chr9 40739985 40740072 -101531372 + (TA)n Simple_repeat Simple_repeat 2 90 0 247 286 211 45 chr9 40740355 40740554 -101530890 + MIR SINE MIR 11 242 -20 196 293 0 40 chr9 40740706 40740781 -101530663 + L2 LINE L2 3242 3313 0 970 188 158 46 chr9 40740885 40741258 -101530186 - Charlie1 DNA MER1_type -1 2760 2346 307 275 14 0 chr9 40741260 40741329 -101530115 - Charlie1 DNA MER1_type -2691 70 1 2456 64 0 7 chr9 40742705 40743003 -101528441 - AluSg SINE Alu -14 296 1 1210 39 0 59 chr9 40743003 40743156 -101528288 - AluY SINE Alu -167 144 1 361 103 59 0 chr9 40744354 40744422 -101527022 - MER4B-int LTR ERV1 -6686 72 1 903 40 0 0 chr9 40744444 40744544 -101526900 + AluY SINE Alu 96 195 -116 234 0 0 0 chr9 40744669 40744695 -101526749 + (T)n Simple_repeat Simple_repeat 1 26 0 26 30 0 0 chr9 40746610 40746643 -101524801 + AT_rich Low_complexity Low_complexity 1 33 0 2373 82 0 3 chr9 40746893 40747187 -101524257 + AluSx SINE Alu 1 293 -19 1731 150 68 0 chr9 40748384 40748664 -101522780 - AluJb SINE Alu -13 299 1 21 0 0 0 chr9 40748819 40748840 -101522604 + AT_rich Low_complexity Low_complexity 1 21 0 2202 75 11 0 chr9 40749260 40749568 -101521876 - AluSp SINE Alu 0 311 1 328 267 112 49 chr9 40749675 40749713 -101521731 + L2 LINE L2 2652 2686 -586 1877 112 49 7 chr9 40749713 40750000 -101521444 - AluSx SINE Alu -13 299 1 328 267 112 49 chr9 40750000 40750362 -101521082 + L2 LINE L2 2686 3092 -180 536 124 216 0 chr9 40751120 40751217 -101520227 + FLAM_C SINE Alu 1 118 -25 1949 145 0 0 chr9 40752004 40752312 -101519132 - AluJb SINE Alu 0 308 1 819 142 0 57 chr9 40752339 40752480 -101518964 + FLAM_C SINE Alu 1 133 0 1468 165 36 93 chr9 40752647 40752699 -101518745 - MLT1A2 LTR MaLR 0 374 321 2248 123 21 9 chr9 40752699 40753032 -101518412 + MER1B DNA MER1_type 1 337 0 1468 165 36 93 chr9 40753032 40753343 -101518101 - MLT1A2 LTR MaLR -53 321 32 884 136 8 8 chr9 40754161 40754293 -101517151 - FLAM_C SINE Alu -11 132 1 206 273 153 53 chr9 40754691 40754841 -101516603 + L2 LINE L2 3047 3211 -61 565 239 88 34 chr9 40754974 40755033 -101516411 + L1ME2 LINE L1 5898 5952 -212 189 0 0 0 chr9 40755033 40755054 -101516390 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 565 239 88 34 chr9 40755054 40755233 -101516211 + L1ME2 LINE L1 5952 6149 -15 2265 104 0 3 chr9 40755338 40755637 -101515807 + AluSx SINE Alu 1 298 -14 2377 84 0 3 chr9 40756047 40756356 -101515088 + AluY SINE Alu 2 309 -2 1910 114 66 4 chr9 40756732 40757005 -101514439 - AluSx SINE Alu -22 290 1 2216 121 3 0 chr9 40757277 40757584 -101513860 - AluSq SINE Alu -5 308 1 895 152 62 17 chr9 40757800 40757978 -101513466 + MER5A DNA MER1_type 3 188 -1 1589 140 49 62 chr9 40758711 40759019 -101512425 - AluJb SINE Alu -7 305 2 607 253 91 40 chr9 40759330 40759528 -101511916 + MIR SINE MIR 29 236 -26 505 190 50 101 chr9 40759528 40759707 -101511737 + MLT1D LTR MaLR 5 174 -331 865 122 8 15 chr9 40759714 40759845 -101511599 + AluJo SINE Alu 7 136 -176 1407 145 54 0 chr9 40759878 40760119 -101511325 + MLT1D LTR MaLR 252 505 0 23 0 0 0 chr9 40760169 40760192 -101511252 + AT_rich Low_complexity Low_complexity 1 23 0 349 170 109 41 chr9 40760806 40760953 -101510491 + Charlie7 DNA MER1_type 2443 2599 -13 725 189 26 99 chr9 40761557 40761678 -101509766 - MER45A DNA AcHobo -1404 177 73 1994 152 7 10 chr9 40761678 40761987 -101509457 - AluJo SINE Alu -4 308 1 725 189 26 99 chr9 40761987 40762056 -101509388 - MER45A DNA AcHobo -1508 73 1 209 299 45 30 chr9 40762106 40762173 -101509271 + L2 LINE L2 3200 3267 -5 649 203 49 0 chr9 40762369 40762492 -101508952 - L2 LINE L2 -1 3312 3184 21 36 0 0 chr9 40762737 40762765 -101508679 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 40763556 40763577 -101507867 + AT_rich Low_complexity Low_complexity 1 21 0 545 248 100 61 chr9 40765016 40765246 -101506198 + MIR SINE MIR 8 246 -16 2122 115 0 7 chr9 40765421 40765738 -101505706 - AluSx SINE Alu 0 315 1 2050 138 0 0 chr9 40765740 40766030 -101505414 - AluJb SINE Alu -18 294 5 500 258 126 47 chr9 40766436 40766626 -101504818 + MIR3 SINE MIR 3 207 -1 2505 76 0 0 chr9 40766688 40766992 -101504452 - AluSg SINE Alu -6 304 1 386 297 50 22 chr9 40767024 40767206 -101504238 + MER5A DNA MER1_type 3 189 0 248 273 0 0 chr9 40768184 40768239 -101503205 + GA-rich Low_complexity Low_complexity 4 58 0 243 0 0 0 chr9 40769518 40769545 -101501899 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 184 222 0 22 chr9 40772357 40772402 -101499042 - MIR SINE MIR -51 211 168 681 141 0 62 chr9 40773241 40773369 -101498075 - FLAM_A SINE Alu -9 124 5 1913 172 0 7 chr9 40773861 40774169 -101497275 - AluJb SINE Alu -6 306 1 870 136 0 36 chr9 40774170 40774310 -101497134 - AluJo SINE Alu -177 135 1 1141 181 85 11 chr9 40775351 40775622 -101495822 + L1MA6 LINE L1 6005 6295 -5 1765 142 7 55 chr9 40775630 40775940 -101495504 + AluJo SINE Alu 1 295 -17 731 159 53 14 chr9 40775956 40776164 -101495280 + Charlie2 DNA MER1_type 2248 2463 -399 454 157 4 2 chr9 40776169 40776392 -101495052 + AluJ SINE Alu 1 261 -51 1279 98 0 0 chr9 40776605 40776768 -101494676 - AluSp SINE Alu -11 302 140 259 93 0 47 chr9 40776772 40776815 -101494629 - AluSp SINE Alu -134 169 129 966 83 0 0 chr9 40776869 40776990 -101494454 - AluSq SINE Alu -14 299 179 22 0 0 0 chr9 40776990 40777012 -101494432 + AT_rich Low_complexity Low_complexity 1 22 0 682 113 119 62 chr9 40777012 40777071 -101494373 - L1MA8 LINE L1 -38 6253 6199 324 0 0 0 chr9 40777071 40777107 -101494337 + (TA)n Simple_repeat Simple_repeat 1 36 0 682 113 119 62 chr9 40777107 40777224 -101494220 - L1MA8 LINE L1 -92 6199 6067 1331 106 6 6 chr9 40777229 40777409 -101494035 - AluSq SINE Alu -133 180 1 386 284 62 67 chr9 40777412 40777440 -101494004 - HAL1 LINE L1 -863 1644 1617 1850 177 0 3 chr9 40777440 40777723 -101493721 - AluJo SINE Alu -30 282 1 386 284 62 67 chr9 40777723 40777888 -101493556 - HAL1 LINE L1 -890 1617 1452 329 286 39 45 chr9 40777899 40778219 -101493225 - L1MEd LINE L1 -4871 1248 1010 2156 98 25 0 chr9 40778220 40778523 -101492921 - AluSx SINE Alu 0 312 3 1363 189 16 4 chr9 40778558 40778806 -101492638 + AluJo SINE Alu 1 251 -61 1992 126 0 0 chr9 40778806 40779076 -101492368 - AluSx SINE Alu -42 270 1 3546 111 48 44 chr9 40779096 40779155 -101492289 - L1MA8 LINE L1 -38 6253 6196 504 0 0 0 chr9 40779155 40779211 -101492233 + (TA)n Simple_repeat Simple_repeat 1 56 0 3546 111 48 44 chr9 40779211 40779837 -101491607 - L1MA8 LINE L1 -95 6196 5565 394 265 92 62 chr9 40779837 40779915 -101491529 - L1MEc LINE L1 -1842 4304 4230 748 208 188 21 chr9 40779915 40779958 -101491486 + MER58A DNA MER1_type 1 35 -2385 1671 184 0 38 chr9 40779958 40780137 -101491307 - AluJo SINE Alu -9 303 140 2185 107 10 7 chr9 40780137 40780437 -101491007 - AluSg SINE Alu -9 301 1 1671 184 0 38 chr9 40780437 40780572 -101490872 - AluJo SINE Alu -172 140 1 748 208 188 21 chr9 40780572 40780720 -101490724 + MER58A DNA MER1_type 35 224 0 394 265 92 62 chr9 40780720 40780977 -101490467 - L1MEc LINE L1 -1916 4230 3959 3348 172 16 33 chr9 40780986 40781046 -101490398 - L1MB7 LINE L1 -13 6171 6111 2373 86 0 3 chr9 40781046 40781348 -101490096 - AluSx SINE Alu -11 301 1 3348 172 16 33 chr9 40781348 40781983 -101489461 - L1MB7 LINE L1 -73 6111 5488 3124 217 91 51 chr9 40781985 40782757 -101488687 - L1MB7 LINE L1 -1596 4550 3810 2303 123 3 0 chr9 40782757 40783066 -101488378 - AluSq SINE Alu -3 310 1 3124 217 91 51 chr9 40783066 40783282 -101488162 - L1MB7 LINE L1 -2336 3810 3604 1729 110 4 0 chr9 40783282 40783509 -101487935 + AluSq SINE Alu 1 228 -85 3124 217 91 51 chr9 40783509 40783745 -101487699 - L1MB7 LINE L1 -2542 3604 3277 423 271 124 37 chr9 40783733 40784143 -101487301 - L1MEc LINE L1 -2190 3956 3511 * 380 281 48 18 chr9 40784499 40784893 -101486551 - L1MEc LINE L1 -2679 3467 3035 690 316 62 17 chr9 40784896 40785195 -101486249 - L1MEc LINE L1 -3236 2910 2626 1649 95 122 71 chr9 40785195 40785359 -101486085 - AluSx SINE Alu -2 310 156 2129 132 0 0 chr9 40785359 40785669 -101485775 - AluSx SINE Alu -2 310 1 1649 95 122 71 chr9 40785669 40785799 -101485645 - AluSx SINE Alu -156 156 1 690 316 62 17 chr9 40785799 40786271 -101485173 - L1MEc LINE L1 -3520 2626 2131 1934 159 7 0 chr9 40786722 40787023 -101484421 + AluJb SINE Alu 1 303 -9 455 251 33 53 chr9 40787173 40787374 -101484070 - MER20B DNA MER1_type -17 202 2 198 358 12 12 chr9 40788831 40788912 -101482532 + L2 LINE L2 2928 3008 -264 5231 104 67 13 chr9 40788921 40789826 -101481618 - Tigger3b DNA MER2_type -3 1228 275 566 153 41 0 chr9 40789825 40789923 -101481521 - Tigger3b DNA MER2_type -1129 102 1 * 383 312 83 87 chr9 40789926 40790179 -101481265 + L2 LINE L2 3020 3271 -1 21 0 0 0 chr9 40790469 40790490 -101480954 + AT_rich Low_complexity Low_complexity 1 21 0 820 171 0 0 chr9 40790498 40790615 -101480829 + AluJb SINE Alu 1 117 -195 2307 77 3 26 chr9 40790678 40790989 -101480455 + AluSg1 SINE Alu 1 304 -5 310 274 32 0 chr9 40791036 40791131 -101480313 - L1ME4a LINE L1 -238 5883 5786 1632 117 4 4 chr9 40791199 40791429 -101480015 - AluSq SINE Alu -83 230 1 455 299 43 20 chr9 40791450 40791704 -101479740 - L1ME4a LINE L1 -365 5756 5497 1125 135 12 6 chr9 40792001 40792164 -101479280 - AluJb SINE Alu -16 296 133 2422 88 0 0 chr9 40792552 40792859 -101478585 - AluSc SINE Alu -2 307 1 201 317 33 0 chr9 40792904 40792964 -101478480 + L2 LINE L2 3211 3272 0 2099 107 0 44 chr9 40794278 40794450 -101476994 - AluSq SINE Alu -10 303 150 2239 93 7 0 chr9 40794450 40794741 -101476703 - AluSx SINE Alu -19 293 1 2099 107 0 44 chr9 40794741 40794885 -101476559 - AluSq SINE Alu -163 150 1 1916 141 10 3 chr9 40794952 40795243 -101476201 + AluSx SINE Alu 1 293 -19 1740 151 39 0 chr9 40795800 40796079 -101475365 + AluSx SINE Alu 1 290 -22 296 185 0 0 chr9 40796605 40796659 -101474785 + Tigger5 DNA MER2_type 1 54 -2269 476 163 12 0 chr9 40796668 40796754 -101474690 + Tigger5 DNA MER2_type 2237 2323 0 1378 147 114 18 chr9 40796894 40797166 -101474278 + AluJo SINE Alu 15 312 0 2337 97 0 0 chr9 40797564 40797862 -101473582 - AluSq SINE Alu -15 298 1 22 0 0 0 chr9 40797873 40797895 -101473549 + AT_rich Low_complexity Low_complexity 1 22 0 609 55 0 0 chr9 40797898 40797971 -101473473 - AluSq SINE Alu -107 206 134 1306 71 6 6 chr9 40798070 40798239 -101473205 - AluSg/x SINE Alu -10 299 131 496 315 85 10 chr9 40798546 40798746 -101472698 + MIR SINE MIR 48 262 0 2308 80 21 0 chr9 40798808 40799097 -101472347 - AluSx SINE Alu -17 295 1 339 258 118 0 chr9 40799627 40799720 -101471724 - L2 LINE L2 -15 3298 3195 462 283 90 43 chr9 40799725 40800006 -101471438 - L1ME3A LINE L1 -230 5923 5657 1900 169 13 7 chr9 40800006 40800313 -101471131 - AluJo SINE Alu -3 309 1 462 283 90 43 chr9 40800313 40800538 -101470906 - L1ME3A LINE L1 -496 5657 5367 186 43 0 0 chr9 40800562 40800585 -101470859 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2204 79 43 0 chr9 40800590 40800868 -101470576 - AluSp SINE Alu -23 290 1 395 298 51 21 chr9 40800922 40801254 -101470190 - L1ME3A LINE L1 -878 5251 4910 247 331 65 0 chr9 40801419 40801543 -101469901 - L1ME3A LINE L1 -1482 4647 4516 594 190 99 0 chr9 40801576 40801697 -101469747 - FLAM_A SINE Alu 0 133 1 512 297 57 83 chr9 40801732 40801850 -101469594 - L1ME3A LINE L1 -5537 582 462 1429 150 113 34 chr9 40801850 40802116 -101469328 + AluJo SINE Alu 1 287 -25 512 297 57 83 chr9 40802116 40802525 -101468919 - L1ME3A LINE L1 -5657 462 69 2430 82 3 3 chr9 40802912 40803217 -101468227 + AluSp SINE Alu 1 305 -8 406 271 63 17 chr9 40803578 40803886 -101467558 - L1MC/D LINE L1 -652 5579 5312 2193 89 0 62 chr9 40803976 40804301 -101467143 - AluSx SINE Alu -7 305 1 4810 89 34 0 chr9 40804303 40804976 -101466468 - L1PA13 LINE L1 -5 6158 5463 435 271 79 4 chr9 40804989 40805269 -101466175 - L1MC/D LINE L1 -3531 2684 2384 328 267 43 105 chr9 40805379 40805589 -101465855 - L1MC/D LINE L1 -4130 2266 2070 1311 127 56 65 chr9 40805769 40805857 -101465587 + MER33 DNA MER1_type 4 91 -2494 2284 125 0 0 chr9 40805857 40806161 -101465283 + AluSx SINE Alu 1 304 -8 1311 127 56 65 chr9 40806161 40806395 -101465049 + MER33 DNA MER1_type 91 323 -1 366 335 33 29 chr9 40806507 40806749 -101464695 - HAL1 LINE L1 -892 1615 1373 430 293 137 11 chr9 40806778 40807048 -101464396 - L1MC/D LINE L1 -4887 1318 1015 1050 155 6 6 chr9 40807049 40807217 -101464227 - AluJo SINE Alu -9 303 136 5439 151 24 8 chr9 40807236 40807595 -101463849 - L1PB1 LINE L1 -1 6150 5798 342 0 0 0 chr9 40807595 40807633 -101463811 + (TA)n Simple_repeat Simple_repeat 2 39 0 5439 151 24 8 chr9 40807633 40808576 -101462868 - L1PB1 LINE L1 -353 5798 4821 453 246 22 7 chr9 40808766 40808904 -101462540 + L1MC4a LINE L1 5790 5929 -1879 252 278 0 0 chr9 40808904 40808958 -101462486 + (TG)n Simple_repeat Simple_repeat 1 54 0 235 242 38 70 chr9 40808971 40809128 -101462316 + HAL1 LINE L1 2355 2506 -1 22 0 0 0 chr9 40809131 40809153 -101462291 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 40809894 40809938 -101461506 + AT_rich Low_complexity Low_complexity 1 44 0 378 250 150 8 chr9 40809943 40810063 -101461381 - L1ME4a LINE L1 -62 6059 5923 484 282 103 43 chr9 40810870 40811289 -101460155 + L1MC4a LINE L1 5462 5905 -1903 2226 102 0 10 chr9 40811744 40812039 -101459405 + AluSg SINE Alu 1 292 -18 748 195 0 0 chr9 40812289 40812417 -101459027 - AluJo SINE Alu -172 130 3 1951 132 25 0 chr9 40812428 40812709 -101458735 - AluSx SINE Alu -18 294 7 395 294 57 76 chr9 40812803 40813275 -101458169 - L1M4 LINE L1 -1197 4949 4487 288 0 0 0 chr9 40813346 40813378 -101458066 + (CA)n Simple_repeat Simple_repeat 2 33 0 2304 99 0 3 chr9 40813438 40813731 -101457713 - AluSq SINE Alu -21 292 1 1227 286 136 25 chr9 40813750 40813945 -101457499 - L1ME LINE L1 -1589 4491 4319 1750 196 14 0 chr9 40813945 40814230 -101457214 + AluJb SINE Alu 2 290 -22 1227 286 136 25 chr9 40814230 40814363 -101457081 - L1ME LINE L1 -1761 4319 4202 2250 116 0 0 chr9 40814363 40814673 -101456771 - AluSq SINE Alu -1 312 3 1227 286 136 25 chr9 40814673 40815450 -101455994 - L1ME LINE L1 -1878 4202 3263 825 158 8 0 chr9 40815458 40815585 -101455859 + FLAM_C SINE Alu 1 128 -5 2037 86 7 45 chr9 40815590 40815910 -101455534 + AluSg SINE Alu 1 309 0 423 0 0 0 chr9 40815910 40815957 -101455487 + (TA)n Simple_repeat Simple_repeat 1 47 0 741 228 57 29 chr9 40816001 40816282 -101455162 - L1ME LINE L1 -3020 3060 2772 433 249 86 16 chr9 40816363 40816620 -101454824 - L1ME LINE L1 -3795 2285 2038 1422 216 18 0 chr9 40816642 40816925 -101454519 + AluJo SINE Alu 1 288 -24 34 24 0 0 chr9 40817112 40817153 -101454291 + AT_rich Low_complexity Low_complexity 1 41 0 1288 172 0 5 chr9 40817187 40817402 -101454042 + AluJb SINE Alu 85 298 -14 386 275 79 82 chr9 40817409 40817739 -101453705 - L1ME LINE L1 -4500 1580 1209 1596 149 28 0 chr9 40817885 40818133 -101453311 - AluJb SINE Alu -57 255 1 376 249 102 34 chr9 40818153 40818536 -101452908 - L1ME LINE L1 -4867 1203 784 22 0 0 0 chr9 40818676 40818698 -101452746 + AT_rich Low_complexity Low_complexity 1 22 0 1658 202 0 7 chr9 40818698 40818990 -101452454 - AluJo SINE Alu -22 290 1 2323 101 0 13 chr9 40819276 40819593 -101451851 + AluSp SINE Alu 1 313 0 2405 81 0 3 chr9 40819871 40820169 -101451275 - AluSq SINE Alu -16 297 1 2160 92 7 7 chr9 40820188 40820481 -101450963 - AluSq SINE Alu -15 298 6 460 236 78 63 chr9 40820540 40820887 -101450557 - L1MEc LINE L1 -2911 3218 2867 1451 176 107 0 chr9 40820929 40821201 -101450243 - AluJo SINE Alu -11 301 1 445 101 78 3 chr9 40821251 40821586 -101449858 + (TA)n Simple_repeat Simple_repeat 1 360 0 1519 140 96 44 chr9 40821610 40821881 -101449563 - AluJb SINE Alu -22 290 6 2306 122 3 0 chr9 40822076 40822388 -101449056 + AluSq SINE Alu 1 313 0 30 59 0 0 chr9 40822402 40822453 -101448991 + AT_rich Low_complexity Low_complexity 1 51 0 770 169 16 0 chr9 40822714 40822838 -101448606 - FLAM_C SINE Alu -17 126 1 21 57 0 0 chr9 40823013 40823048 -101448396 + AT_rich Low_complexity Low_complexity 1 35 0 1930 142 16 13 chr9 40823924 40824235 -101447209 - AluJb SINE Alu 0 312 1 497 269 96 10 chr9 40824237 40824434 -101447010 - L1MEc LINE L1 -4100 2210 1997 2264 112 0 7 chr9 40824535 40824838 -101446606 - AluSx SINE Alu -11 301 1 425 264 160 48 chr9 40824944 40825238 -101446206 - L1MEc LINE L1 -4471 1658 1294 2331 105 3 0 chr9 40825238 40825543 -101445901 - AluSp SINE Alu -7 306 1 425 264 160 48 chr9 40825543 40825703 -101445741 - L1MEc LINE L1 -4835 1294 1153 288 309 0 7 chr9 40825822 40825961 -101445483 - L1MEc LINE L1 -5011 1108 971 291 260 55 16 chr9 40825989 40826116 -101445328 - MARNA DNA Mariner -53 533 402 242 314 49 0 chr9 40826026 40826128 -101445316 + MARNA DNA Mariner 91 197 -389 * 313 269 106 77 chr9 40826393 40826640 -101444804 + L1ME LINE L1 5420 5681 -440 234 304 89 68 chr9 40827670 40827861 -101443583 + L2 LINE L2 3119 3313 0 249 186 0 0 chr9 40828288 40828331 -101443113 - L2 LINE L2 -3 3310 3268 356 289 121 77 chr9 40828560 40829104 -101442340 - L1M2 LINE L1 -5523 1326 759 324 275 231 60 chr9 40829116 40829501 -101441943 + L1M2 LINE L1 653 1103 -5746 2257 64 24 7 chr9 40829609 40829904 -101441540 - AluSg1 SINE Alu -9 300 1 2280 149 59 74 chr9 40830083 40830594 -101440850 + MLT2B2 LTR ERVL 2 504 -11 408 177 0 0 chr9 40831230 40831292 -101440152 + AluJo SINE Alu 1 62 -250 605 158 42 0 chr9 40831292 40831387 -101440057 - AluJb SINE Alu -16 296 198 1297 174 0 64 chr9 40831388 40831652 -101439792 + AluJo SINE Alu 52 298 -14 2631 7 0 0 chr9 40831655 40831940 -101439504 + AluYb8 SINE Alu 34 318 0 678 210 157 26 chr9 40832233 40832462 -101438982 - MIR SINE MIR 0 262 4 234 235 0 0 chr9 40832767 40832818 -101438626 - Charlie8 DNA MER1_type -2225 192 142 2105 127 8 29 chr9 40833130 40833508 -101437936 + L1MB3 LINE L1 5814 6183 0 559 234 148 60 chr9 40833509 40834055 -101437389 + HAL1 LINE L1 1832 2425 -82 229 193 36 48 chr9 40834051 40834134 -101437310 - L1MB3 LINE L1 -125 6058 5977 * 236 250 73 32 chr9 40834962 40835086 -101436358 - L1MC4 LINE L1 0 8042 7914 2113 196 73 6 chr9 40835107 40835349 -101436095 - L1MB3 LINE L1 -2 6181 5940 3693 207 58 115 chr9 40835349 40835737 -101435707 - L1ME2 LINE L1 -233 5931 5522 684 178 42 0 chr9 40835737 40835855 -101435589 - FLAM_C SINE Alu -6 127 5 3693 207 58 115 chr9 40835855 40836976 -101434468 - L1ME2 LINE L1 -642 5522 4338 418 223 21 0 chr9 40836976 40837070 -101434374 - AluJo SINE Alu -177 135 40 3693 207 58 115 chr9 40837070 40837192 -101434252 - L1ME2 LINE L1 -1826 4338 4211 786 156 7 22 chr9 40837192 40837327 -101434117 + FLAM_C SINE Alu 1 133 0 3693 207 58 115 chr9 40837327 40837511 -101433933 - L1ME2 LINE L1 -1953 4211 4018 192 111 0 0 chr9 40837511 40837547 -101433897 + (TG)n Simple_repeat Simple_repeat 1 36 0 3693 207 58 115 chr9 40837547 40838258 -101433186 - L1ME2 LINE L1 -2146 4018 3518 2331 114 46 8 chr9 40838303 40838654 -101432790 + THE1B LTR MaLR 1 364 0 957 229 79 46 chr9 40838670 40839361 -101432083 + LTR41 LTR ERVL 1 767 -6 424 307 61 19 chr9 40839883 40840162 -101431282 + LTR40c LTR ERVL 148 480 -39 2334 101 0 0 chr9 40840540 40840837 -101430607 + AluSx SINE Alu 1 297 -15 181 344 84 69 chr9 40841078 40841340 -101430104 + L2 LINE L2 3007 3272 0 2199 115 0 0 chr9 40841984 40842271 -101429173 + AluSx SINE Alu 1 287 -25 192 97 0 0 chr9 40842274 40842305 -101429139 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2230 106 0 0 chr9 40843373 40843665 -101427779 + AluSx SINE Alu 1 292 -20 2337 88 7 0 chr9 40844321 40844617 -101426827 - AluSx SINE Alu -14 298 1 232 320 40 0 chr9 40845441 40845541 -101425903 + L3 LINE CR1 1069 1172 -405 382 283 68 11 chr9 40845585 40845762 -101425682 + L3 LINE CR1 1301 1487 -90 27 49 0 0 chr9 40846294 40846335 -101425109 + AT_rich Low_complexity Low_complexity 1 41 0 247 340 52 26 chr9 40846958 40847111 -101424333 + L2 LINE L2 2902 3058 -214 764 179 136 11 chr9 40847468 40847652 -101423792 + MER3 DNA MER1_type 2 208 -1 259 286 71 0 chr9 40849662 40849760 -101421684 - L1ME4a LINE L1 -4 6117 6013 2363 124 104 2 chr9 40850365 40850768 -101420676 - L1PB3 LINE L1 -2 6152 5709 2060 106 50 3 chr9 40851516 40851799 -101419645 - AluSg SINE Alu -10 300 5 2186 103 7 0 chr9 40852009 40852299 -101419145 - AluSx SINE Alu -6 306 15 209 335 153 31 chr9 40852517 40852804 -101418640 - L2 LINE L2 -5 3267 2946 2493 86 0 0 chr9 40852813 40853126 -101418318 - AluSp SINE Alu 0 313 1 2069 124 10 13 chr9 40853126 40853424 -101418020 - AluSx SINE Alu -14 298 1 24 53 0 0 chr9 40853759 40853797 -101417647 + AT_rich Low_complexity Low_complexity 1 38 0 1574 156 45 24 chr9 40854213 40854501 -101416943 + AluJo SINE Alu 1 294 -18 839 314 64 36 chr9 40854749 40855281 -101416163 - L3 LINE CR1 -23 1554 1008 255 242 22 33 chr9 40855337 40855428 -101416016 - MARNA DNA Mariner -478 108 19 1393 167 93 0 chr9 40855736 40855993 -101415451 + AluJb SINE Alu 1 281 -31 681 158 0 39 chr9 40856057 40856184 -101415260 - FRAM SINE Alu -5 171 50 2132 118 0 0 chr9 40856204 40856484 -101414960 - AluSc SINE Alu -29 280 1 587 283 79 22 chr9 40856489 40856617 -101414827 - L1MC4 LINE L1 0 8042 7923 1657 178 3 43 chr9 40856617 40856920 -101414524 + AluJo SINE Alu 1 291 -21 587 283 79 22 chr9 40856920 40857198 -101414246 - L1MC4 LINE L1 -119 7923 7613 825 139 0 8 chr9 40857212 40857334 -101414110 - FLAM_C SINE Alu -20 123 3 389 173 49 0 chr9 40857375 40857456 -101413988 - L1MC4 LINE L1 -487 7555 7471 637 162 76 0 chr9 40857470 40857575 -101413869 + FLAM_C SINE Alu 14 126 -17 1409 140 123 74 chr9 40857586 40857724 -101413720 + AluJo SINE Alu 1 131 -181 1886 155 0 7 chr9 40857724 40858015 -101413429 + AluJo SINE Alu 1 289 -23 1409 140 123 74 chr9 40858015 40858161 -101413283 + AluJo SINE Alu 131 299 -13 559 219 215 15 chr9 40858186 40858446 -101412998 - L1MC4a LINE L1 -467 7341 7030 25 31 0 0 chr9 40858490 40858522 -101412922 + AT_rich Low_complexity Low_complexity 1 32 0 365 318 75 3 chr9 40859414 40859735 -101411709 + L1M4 LINE L1 3099 3442 -2704 1657 137 78 25 chr9 40860135 40860419 -101411025 + AluJb SINE Alu 1 299 -13 2107 151 0 0 chr9 40860700 40861012 -101410432 - AluJb SINE Alu 0 312 1 2084 142 10 0 chr9 40862502 40862804 -101408640 - AluJo SINE Alu -7 305 1 2807 190 19 21 chr9 40862961 40863109 -101408335 + LTR53 LTR ERVL 1 148 -371 9001 28 28 2 chr9 40863109 40864933 -101406511 + L1PA4 LINE L1 4299 6149 -6 2807 190 19 21 chr9 40864933 40865304 -101406140 + LTR53 LTR ERVL 148 519 0 1990 130 0 59 chr9 40865314 40865465 -101405979 + AluSq SINE Alu 1 125 -188 1825 117 0 4 chr9 40865465 40865722 -101405722 + AluY SINE Alu 50 305 -6 1990 130 0 59 chr9 40865722 40865892 -101405552 + AluSq SINE Alu 125 303 -10 616 246 106 47 chr9 40866552 40866788 -101404656 + MIR SINE MIR 10 259 -3 2070 105 6 43 chr9 40866864 40867187 -101404257 - AluY SINE Alu 0 311 1 21 0 0 0 chr9 40867308 40867329 -101404115 + AT_rich Low_complexity Low_complexity 1 21 0 257 290 54 32 chr9 40867619 40867712 -101403732 - MIR SINE MIR -77 131 37 2101 127 10 0 chr9 40868329 40868621 -101402823 - AluSq SINE Alu -18 295 1 243 245 0 0 chr9 40868819 40868872 -101402572 - L2 LINE L2 -5 3308 3256 368 242 185 38 chr9 40869274 40869485 -101401959 - HAL1 LINE L1 -17 2490 2249 1048 179 40 0 chr9 40869515 40869688 -101401756 - AluJb SINE Alu -25 287 108 2107 106 14 0 chr9 40869712 40869994 -101401450 - AluSx SINE Alu -26 286 1 233 97 0 0 chr9 40870179 40870210 -101401234 - MER3 DNA MER1_type -160 49 19 2097 144 3 0 chr9 40870210 40870502 -101400942 - AluSx SINE Alu -19 293 1 2030 190 72 44 chr9 40870507 40871034 -101400410 - L1ME2 LINE L1 -131 6033 5492 529 327 86 4 chr9 40871116 40871394 -101400050 - L1MEc LINE L1 -6092 304 4 1958 156 0 0 chr9 40871620 40871903 -101399541 - AluJb SINE Alu -24 288 6 237 200 31 31 chr9 40871921 40871986 -101399458 - HAL1 LINE L1 -366 2141 2077 201 299 120 0 chr9 40872155 40872272 -101399172 + MIR SINE MIR 59 189 -73 1673 183 31 0 chr9 40872662 40872952 -101398492 + AluJo SINE Alu 1 299 -13 531 155 48 10 chr9 40873035 40873138 -101398306 - FLAM_C SINE Alu -26 117 11 244 196 0 0 chr9 40873147 40873198 -101398246 + L1MC4 LINE L1 6653 6703 -1339 318 223 0 43 chr9 40873216 40873310 -101398134 - L1MC4 LINE L1 -1339 6703 6614 1879 123 3 47 chr9 40873313 40873613 -101397831 - AluSx SINE Alu -25 287 1 184 245 19 19 chr9 40873898 40873951 -101397493 - L2 LINE L2 0 3272 3220 277 330 48 0 chr9 40874402 40874505 -101396939 + L2 LINE L2 3203 3310 -3 581 217 26 84 chr9 40874615 40874768 -101396676 - L1MB3 LINE L1 -28 6155 6018 2208 89 4 7 chr9 40874768 40875049 -101396395 - AluY SINE Alu -31 280 1 581 217 26 84 chr9 40875049 40875121 -101396323 - L1MB3 LINE L1 -165 6018 5943 425 190 0 13 chr9 40875125 40875204 -101396240 + MSTC LTR MaLR 1 78 -350 429 235 274 11 chr9 40875504 40875743 -101395701 + L2 LINE L2 2715 3011 -302 783 140 199 72 chr9 40876527 40876748 -101394696 + MER4D LTR ERV1 1 249 -623 5568 118 191 39 chr9 40876759 40877837 -101393607 - pTR5 LTR ERV1 0 2438 1197 1022 202 157 45 chr9 40878001 40878377 -101393067 - Charlie1 DNA MER1_type -1 2760 2343 328 275 14 0 chr9 40878376 40878445 -101392999 - Charlie1 DNA MER1_type -2691 70 1 * 428 286 19 0 chr9 40930420 40930574 -101340870 + L1ME4a LINE L1 5749 5905 -216 205 219 0 0 chr9 40931372 40931413 -101340031 - MIR3 SINE MIR -6 202 162 217 132 0 0 chr9 40931629 40931667 -101339777 + (A)n Simple_repeat Simple_repeat 1 38 0 1258 129 0 0 chr9 40931683 40931846 -101339598 + AluSq SINE Alu 1 163 -150 5808 109 20 34 chr9 40931846 40932808 -101338636 - Tigger1 DNA MER2_type -80 2338 1391 8712 124 25 9 chr9 40932908 40934282 -101337162 - Tigger1 DNA MER2_type -1022 1396 2 2224 103 3 0 chr9 40934331 40934621 -101336823 + AluSq SINE Alu 1 291 -22 2114 123 0 35 chr9 40934631 40934941 -101336503 + AluSc SINE Alu 1 299 -10 602 277 150 5 chr9 40936261 40936481 -101334963 + MIR SINE MIR 2 253 -9 299 232 277 18 chr9 40936769 40936881 -101334563 - MIR3 SINE MIR -46 162 22 221 154 58 0 chr9 40937216 40937268 -101334176 + (CAGGG)n Simple_repeat Simple_repeat 4 58 0 197 371 48 24 chr9 40938018 40938142 -101333302 - L2 LINE L2 -5 3308 3182 248 281 94 31 chr9 40938190 40938318 -101333126 - MIR SINE MIR -19 243 108 227 316 71 0 chr9 40939572 40939670 -101331774 - MIR SINE MIR -3 259 155 232 121 0 0 chr9 40939724 40939757 -101331687 - MIR SINE MIR -213 49 17 235 245 135 80 chr9 40939844 40940007 -101331437 + MIR3 SINE MIR 16 187 -21 317 280 53 15 chr9 40940578 40940710 -101330734 + MIR3 SINE MIR 48 184 -24 1315 196 111 101 chr9 40940967 40941482 -101329962 + MLT2B1 LTR ERVL 1 520 0 402 304 132 71 chr9 40942898 40943304 -101328140 + L1MC4a LINE L1 5521 5800 -364 214 248 153 51 chr9 40943530 40943673 -101327771 - MIR3 SINE MIR -71 137 1 2424 80 0 0 chr9 40944451 40944764 -101326680 + AluSq SINE Alu 1 313 0 255 31 0 0 chr9 40945200 40945232 -101326212 + (CA)n Simple_repeat Simple_repeat 1 32 0 1179 61 0 0 chr9 40945757 40945904 -101325540 + L1PA5 LINE L1 6008 6154 0 251 308 58 8 chr9 40946498 40946618 -101324826 + MIR SINE MIR 20 145 -63 354 355 7 40 chr9 40946802 40946954 -101324490 + MIR SINE MIR 30 176 -86 189 331 176 0 chr9 40949658 40949794 -101321650 + L2 LINE L2 2898 3057 -215 1905 151 0 0 chr9 40950786 40951085 -101320359 - AluJb SINE Alu -13 299 1 181 337 0 11 chr9 40951228 40951317 -101320127 - L2 LINE L2 -27 3245 3158 206 242 0 65 chr9 40951486 40951548 -101319896 - L2 LINE L2 -546 2768 2711 227 288 209 20 chr9 40952096 40952249 -101319195 - MIR3 SINE MIR -20 188 7 346 271 8 59 chr9 40953217 40953335 -101318109 + MIR SINE MIR 81 192 -70 374 254 61 8 chr9 40954375 40954515 -101316929 + MIR SINE MIR 42 192 -62 184 188 0 0 chr9 40957906 40957938 -101313506 + MIR SINE MIR 119 150 -112 350 242 81 32 chr9 40959373 40959497 -101311947 + L2 LINE L2 3184 3313 0 192 205 0 0 chr9 40959693 40959732 -101311712 - L2 LINE L2 -91 3181 3143 702 253 143 22 chr9 40959972 40960245 -101311199 - L2 LINE L2 0 3313 3008 191 187 227 13 chr9 40960916 40960991 -101310453 + MIR SINE MIR 34 124 -84 446 249 68 0 chr9 40961763 40961900 -101309544 - MIR SINE MIR -63 145 35 556 240 71 19 chr9 40962482 40962636 -101308808 + MIR SINE MIR 100 261 -1 210 352 0 11 chr9 40963585 40963673 -101307771 - MIR3 SINE MIR -9 199 113 395 390 42 5 chr9 40963905 40964095 -101307349 - L3 LINE CR1 -1 1576 1380 252 283 0 0 chr9 40964114 40964167 -101307277 + MIR3 SINE MIR 108 160 -48 376 271 68 5 chr9 40964645 40964763 -101306681 + MIR SINE MIR 63 183 -63 185 273 114 34 chr9 40964844 40964932 -101306512 - MIR SINE MIR -60 148 54 1597 173 32 7 chr9 40965666 40965943 -101305501 + AluJb SINE Alu 6 289 -23 467 242 0 30 chr9 40966442 40966574 -101304870 + MIR3 SINE MIR 66 193 -15 468 315 75 58 chr9 40971933 40972414 -101299030 + L1MC4a LINE L1 5506 5996 -125 203 306 14 14 chr9 40972594 40972666 -101298778 - MER5A DNA MER1_type -1 188 117 * 253 210 48 0 chr9 40972662 40972724 -101298720 + MER5A DNA MER1_type 122 186 -3 621 124 0 0 chr9 40972999 40973096 -101298348 + L1PB1 LINE L1 6053 6149 -2 2270 97 0 7 chr9 40973390 40973700 -101297744 + AluSp SINE Alu 3 310 -3 2109 103 0 38 chr9 40973706 40974025 -101297419 + AluSx SINE Alu 1 307 -5 893 188 11 6 chr9 40974184 40974360 -101297084 + MSTB1 LTR MaLR 256 432 0 643 103 21 0 chr9 40974360 40974455 -101296989 + MLT1B LTR MaLR 294 390 0 188 277 62 0 chr9 40975531 40975596 -101295848 + L3 LINE CR1 1400 1468 -109 351 233 106 101 chr9 40976819 40977008 -101294436 - L3 LINE CR1 -76 1501 1312 244 317 250 0 chr9 40978297 40978417 -101293027 + MIR SINE MIR 96 245 -17 263 310 9 26 chr9 40979546 40979659 -101291785 - L2 LINE L2 -28 3244 3134 202 325 187 30 chr9 40979667 40979870 -101291574 + L2 LINE L2 3027 3261 -11 691 275 80 23 chr9 40980162 40980424 -101291020 - LTR16C LTR ERVL -2 489 213 376 301 55 33 chr9 40981352 40981535 -101289909 + L1ME4a LINE L1 5799 5985 -136 523 192 3 87 chr9 40982030 40982172 -101289272 + MIR SINE MIR 52 181 -63 1879 121 7 0 chr9 40982173 40982454 -101288990 - AluSx SINE Alu -4 308 26 791 217 96 24 chr9 40983353 40983519 -101287925 + MER45A DNA AcHobo 1 178 0 231 305 99 0 chr9 40983560 40983671 -101287773 + MIR SINE MIR 35 156 -52 2126 98 0 22 chr9 40983808 40984124 -101287320 + AluSc SINE Alu 1 309 0 285 292 173 22 chr9 40984953 40985138 -101286306 - MIR SINE MIR -29 233 21 570 147 202 0 chr9 40986195 40986304 -101285140 + AluJo SINE Alu 6 136 -176 470 316 64 5 chr9 40987204 40987391 -101284053 - L3 LINE CR1 -104 1473 1276 2217 109 0 0 chr9 40987454 40987766 -101283678 - AluSx SINE Alu 0 312 1 735 321 68 23 chr9 40987793 40988145 -101283299 + L3 LINE CR1 1140 1507 -70 295 232 0 14 chr9 40988457 40988526 -101282918 - MER58A DNA MER1_type -1 223 156 699 222 17 33 chr9 40988541 40988721 -101282723 - MER5B DNA MER1_type 0 178 2 284 244 51 26 chr9 40988782 40988860 -101282584 - MIR SINE MIR -87 121 42 541 292 35 12 chr9 40989560 40989731 -101281713 - MIR SINE MIR -66 196 22 498 211 156 0 chr9 40990260 40990388 -101281056 + MIR SINE MIR 19 166 -96 249 355 89 47 chr9 40991158 40991327 -101280117 + L2 LINE L2 3097 3272 0 * 353 209 62 54 chr9 40991325 40991454 -101279990 - MIR3 SINE MIR -66 142 13 225 236 34 56 chr9 40992967 40993056 -101278388 + MIR SINE MIR 16 102 -106 206 222 0 0 chr9 40993324 40993360 -101278084 + (CAGG)n Simple_repeat Simple_repeat 4 39 0 206 242 16 0 chr9 40994448 40994510 -101276934 - L2 LINE L2 -557 2757 2695 340 328 211 0 chr9 40994853 40995057 -101276387 + MIR SINE MIR 9 255 -7 199 303 131 30 chr9 40995728 40995926 -101275518 + L2 LINE L2 2844 3061 -211 2448 90 3 0 chr9 40996377 40996687 -101274757 + AluSp SINE Alu 1 311 -2 300 178 0 82 chr9 40997145 40997218 -101274226 - L2 LINE L2 0 3272 3206 2103 112 10 43 chr9 40998088 40998393 -101273051 + AluSx SINE Alu 1 295 -17 1851 94 0 4 chr9 40998715 40998950 -101272494 + AluSx SINE Alu 3 236 -76 589 227 130 0 chr9 40999009 40999163 -101272281 + MER58B DNA MER1_type 168 341 0 454 248 40 8 chr9 40999284 40999409 -101272035 - MARNA DNA Mariner -196 390 262 238 233 17 0 chr9 40999732 40999792 -101271652 - MIR SINE MIR -67 141 81 351 303 120 7 chr9 40999950 41000092 -101271352 + MIR SINE MIR 87 244 -18 344 189 0 0 chr9 41000977 41001051 -101270393 - L1ME4a LINE L1 -92 6029 5956 1500 198 32 0 chr9 41001130 41001413 -101270031 + AluJo SINE Alu 1 292 -20 1731 152 52 7 chr9 41001793 41002063 -101269381 - AluJb SINE Alu -15 297 16 2175 112 10 26 chr9 41002100 41002413 -101269031 + AluSx SINE Alu 5 312 0 247 143 41 0 chr9 41002416 41002465 -101268979 - MIR SINE MIR -73 135 85 2286 100 31 0 chr9 41002569 41002860 -101268584 - AluSq SINE Alu -13 300 1 2320 86 3 10 chr9 41003930 41004234 -101267210 + AluSc SINE Alu 1 302 -7 196 322 9 52 chr9 41005612 41005727 -101265717 + L2 LINE L2 2950 3059 -213 490 223 26 104 chr9 41005905 41006014 -101265430 + MIR SINE MIR 42 131 -131 2299 103 0 0 chr9 41006014 41006306 -101265138 - AluY SINE Alu -19 292 1 490 223 26 104 chr9 41006306 41006389 -101265055 + MIR SINE MIR 131 219 -43 313 276 0 0 chr9 41006560 41006658 -101264786 - MIR SINE MIR 0 262 165 217 354 0 63 chr9 41006810 41006937 -101264507 - MIR SINE MIR -73 135 25 259 336 28 28 chr9 41007442 41007549 -101263895 + L3 LINE CR1 1256 1362 -215 592 253 49 19 chr9 41007742 41007904 -101263540 - MER5B DNA MER1_type -1 177 11 450 303 133 57 chr9 41008974 41009108 -101262336 + L1ME LINE L1 4931 5053 -1093 1952 145 3 3 chr9 41009108 41009397 -101262047 - AluSx SINE Alu -19 293 5 450 303 133 57 chr9 41009397 41009684 -101261760 + L1ME LINE L1 5053 5384 -762 372 283 107 11 chr9 41009764 41009951 -101261493 + L1ME LINE L1 5544 5748 -373 551 292 70 46 chr9 41009952 41010233 -101261211 + HAL1b LINE L1 1188 1330 -18 206 267 44 67 chr9 41010598 41010688 -101260756 + L3 LINE CR1 1364 1451 -126 688 272 166 33 chr9 41011115 41011878 -101259566 + L2 LINE L2 2405 3291 -22 207 0 0 0 chr9 41011886 41011909 -101259535 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 255 287 86 12 chr9 41012560 41012697 -101258747 + MIR SINE MIR 52 195 -57 617 188 65 178 chr9 41012861 41012938 -101258506 + MIR SINE MIR 3 87 -175 1953 115 15 0 chr9 41012938 41013219 -101258225 - AluSx SINE Alu 0 306 22 240 67 0 0 chr9 41013219 41013249 -101258195 - AluSx SINE Alu -94 39 10 617 188 65 178 chr9 41013249 41013433 -101258011 + MIR SINE MIR 85 262 0 257 366 15 23 chr9 41013635 41013766 -101257678 + L2 LINE L2 3138 3267 -5 1886 139 73 3 chr9 41013821 41014109 -101257335 + AluJb SINE Alu 3 310 -2 506 257 29 7 chr9 41014956 41015092 -101256352 + MIR SINE MIR 11 149 -113 1374 215 119 50 chr9 41015092 41015496 -101255948 + MLT1H LTR MaLR 4 435 -114 830 200 69 0 chr9 41015538 41015698 -101255746 + MER58A DNA MER1_type 1 171 -53 228 118 0 0 chr9 41015712 41015746 -101255698 + MLT1H LTR MaLR 508 541 -8 462 273 60 60 chr9 41016151 41016451 -101254993 + L2 LINE L2 2862 3161 -111 22 0 0 0 chr9 41016565 41016587 -101254857 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 41016748 41016769 -101254675 + AT_rich Low_complexity Low_complexity 1 21 0 227 333 0 0 chr9 41017212 41017284 -101254160 + (CA)n Simple_repeat Simple_repeat 2 73 0 1416 153 113 4 chr9 41017621 41017869 -101253575 + AluJo SINE Alu 1 275 -37 485 229 97 23 chr9 41018173 41018348 -101253096 + MER5A DNA MER1_type 2 189 0 204 97 0 0 chr9 41020169 41020200 -101251244 + (CAGGG)n Simple_repeat Simple_repeat 3 33 0 320 253 11 32 chr9 41020239 41020334 -101251110 + MIR3 SINE MIR 62 154 -54 28 71 0 0 chr9 41020791 41020847 -101250597 + GC_rich Low_complexity Low_complexity 1 56 0 34 73 0 28 chr9 41021431 41021540 -101249904 + GC_rich Low_complexity Low_complexity 1 106 0 27 62 0 0 chr9 41021936 41021984 -101249460 + GC_rich Low_complexity Low_complexity 1 48 0 282 190 29 58 chr9 41022045 41022182 -101249262 + (CCCCG)n Simple_repeat Simple_repeat 2 134 0 2399 68 0 10 chr9 41022837 41023129 -101248315 + AluSg1 SINE Alu 1 289 -20 271 57 0 0 chr9 41023136 41023171 -101248273 - MIR SINE MIR -62 146 112 195 303 67 22 chr9 41023777 41023866 -101247578 - MIR3 SINE MIR -106 102 10 288 0 0 0 chr9 41024090 41024122 -101247322 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 342 0 0 0 chr9 41024121 41024159 -101247285 + (GA)n Simple_repeat Simple_repeat 1 38 0 293 241 193 35 chr9 41025063 41025208 -101246236 - MIR3 SINE MIR -2 206 39 2145 105 33 13 chr9 41025500 41025805 -101245639 - AluY SINE Alu 0 311 1 2316 89 7 0 chr9 41025805 41026097 -101245347 - AluSp SINE Alu -19 294 1 255 333 50 64 chr9 41026325 41026780 -101244664 - L2 LINE L2 -227 3045 2594 207 259 37 0 chr9 41026783 41026837 -101244607 + L2 LINE L2 3217 3272 0 277 337 0 0 chr9 41026991 41027086 -101244358 - L2 LINE L2 -1017 2297 2203 * 1172 259 117 21 chr9 41027085 41027804 -101243640 + L2 LINE L2 2444 3313 0 551 202 8 8 chr9 41027926 41028055 -101243389 - L1MA9 LINE L1 -36 6276 6148 9078 114 61 56 chr9 41028055 41029879 -101241565 + pTR5 LTR ERV1 71 2429 -9 3928 168 25 64 chr9 41029879 41030243 -101241201 - L1MA9 LINE L1 -161 6151 5774 1875 153 0 38 chr9 41030243 41030556 -101240888 - AluJb SINE Alu -10 302 2 784 104 0 0 chr9 41030559 41030674 -101240770 - L1MA3 LINE L1 0 6305 6191 3928 168 25 64 chr9 41030674 41031136 -101240308 - L1MA9 LINE L1 -540 5772 5294 2129 131 6 13 chr9 41031136 41031449 -101239995 - AluSx SINE Alu -1 311 1 3928 168 25 64 chr9 41031449 41031492 -101239952 - L1MA9 LINE L1 -1018 5294 5251 2346 79 10 3 chr9 41031492 41031784 -101239660 + AluSg1 SINE Alu 1 294 -15 3928 168 25 64 chr9 41031784 41032350 -101239094 - L1MA9 LINE L1 -1061 5251 4738 1659 163 30 40 chr9 41033255 41033390 -101238054 + AluJb SINE Alu 1 136 -176 1914 128 20 20 chr9 41033390 41033687 -101237757 + AluSx SINE Alu 15 311 -1 1659 163 30 40 chr9 41033687 41033851 -101237593 + AluJb SINE Alu 136 297 -15 256 247 49 12 chr9 41033869 41033950 -101237494 + MER53 DNA DNA 105 188 -1 288 257 119 0 chr9 41035008 41035117 -101236327 + AluSp SINE Alu 12 133 -170 1943 202 23 2 chr9 41035243 41035678 -101235766 + L1MB7 LINE L1 4419 4862 -1284 1340 121 109 59 chr9 41035684 41035830 -101235614 - L1MA8 LINE L1 -1 6290 6153 2198 123 0 22 chr9 41035830 41036148 -101235296 - AluSx SINE Alu -1 311 1 1340 121 109 59 chr9 41036148 41036339 -101235105 - L1MA8 LINE L1 -138 6153 5936 24 32 0 0 chr9 41036340 41036371 -101235073 + AT_rich Low_complexity Low_complexity 1 31 0 641 174 0 0 chr9 41036371 41036480 -101234964 - FLAM_C SINE Alu -27 116 8 1441 112 9 0 chr9 41036487 41036711 -101234733 - L1MA8 LINE L1 -343 5948 5723 * 3995 162 111 6 chr9 41036707 41036945 -101234499 + L1MB7 LINE L1 4954 5166 -1018 1739 162 10 14 chr9 41036945 41037235 -101234209 + AluJo SINE Alu 1 289 -23 3995 162 111 6 chr9 41037235 41038069 -101233375 + L1MB7 LINE L1 5166 6165 -19 482 253 39 101 chr9 41038263 41038520 -101232924 - L3 LINE CR1 -76 1501 1261 2260 125 7 0 chr9 41038801 41039104 -101232340 - AluSq SINE Alu -8 305 1 1836 145 22 0 chr9 41039452 41039753 -101231691 - AluJb SINE Alu 0 307 1 284 288 79 29 chr9 41039759 41039911 -101231533 + MIR SINE MIR 52 207 -55 208 313 152 18 chr9 41040216 41040328 -101231116 - L2 LINE L2 -1 3312 3186 2126 113 28 3 chr9 41040377 41040668 -101230776 + AluSx SINE Alu 1 298 -14 1048 231 15 23 chr9 41040830 41041090 -101230354 - MIR SINE MIR 0 262 5 2361 118 3 0 chr9 41041343 41041649 -101229795 + AluSx SINE Alu 1 307 -5 451 287 2 7 chr9 41042249 41042413 -101229031 + MIR SINE MIR 28 146 -62 229 265 15 15 chr9 41042659 41042727 -101228717 + MIR SINE MIR 24 91 -117 379 351 105 19 chr9 41043101 41043471 -101227973 - L2 LINE L2 -18 3254 2853 925 184 0 0 chr9 41043584 41043725 -101227719 - FRAM SINE Alu -22 154 14 246 250 143 7 chr9 41044166 41044306 -101227138 - L1ME4a LINE L1 -3 6118 5960 916 287 58 17 chr9 41044307 41044655 -101226789 - L1ME4a LINE L1 -193 5928 5567 374 272 59 41 chr9 41045212 41045322 -101226122 + L1ME LINE L1 5511 5627 -494 1585 178 16 13 chr9 41045322 41045626 -101225818 - AluJo SINE Alu -7 305 1 374 272 59 41 chr9 41045626 41045684 -101225760 + L1ME LINE L1 5627 5682 -439 312 167 0 19 chr9 41045685 41045739 -101225705 + MER66A LTR ERV1 286 338 -140 2057 132 6 3 chr9 41045937 41046248 -101225196 + AluSx SINE Alu 1 312 0 409 309 210 29 chr9 41046764 41047181 -101224263 - L2 LINE L2 0 3313 2778 1773 123 14 20 chr9 41047181 41047499 -101223945 + AluJo SINE Alu 1 312 0 409 309 210 29 chr9 41047499 41047572 -101223872 - L2 LINE L2 -535 2778 2719 396 40 0 0 chr9 41047580 41047630 -101223814 + (TG)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr9 41047677 41047702 -101223742 + AT_rich Low_complexity Low_complexity 1 25 0 341 265 37 49 chr9 41047714 41047744 -101223700 - L1PA16 LINE L1 -312 5854 5526 2075 120 0 3 chr9 41047744 41048043 -101223401 - AluSx SINE Alu -14 298 1 769 165 18 12 chr9 41048043 41048207 -101223237 - L1MB8 LINE L1 -352 5826 5662 753 188 13 7 chr9 41048201 41048355 -101223089 - L1M4 LINE L1 -6380 162 8 * 1798 119 70 3 chr9 41048375 41048661 -101222783 - AluSg SINE Alu -4 306 2 225 346 38 62 chr9 41048771 41048982 -101222462 + L2 LINE L2 2440 2645 -669 1278 187 50 40 chr9 41049165 41049326 -101222118 - L1MC2 LINE L1 -72 6272 6105 1541 176 3 33 chr9 41049326 41049627 -101221817 - AluJo SINE Alu -20 292 1 1278 187 50 40 chr9 41049627 41049765 -101221679 - L1MC2 LINE L1 -239 6105 5970 2111 123 0 0 chr9 41049799 41050099 -101221345 + AluSx SINE Alu 1 300 -12 248 236 0 0 chr9 41050151 41050206 -101221238 + CT-rich Low_complexity Low_complexity 2 56 0 392 272 96 7 chr9 41050207 41050343 -101221101 - MIR SINE MIR -83 179 32 2261 76 10 19 chr9 41050370 41050684 -101220760 - AluY SINE Alu 0 311 1 262 376 57 21 chr9 41050705 41050846 -101220598 + L2 LINE L2 3122 3267 -5 2243 102 0 0 chr9 41052640 41052944 -101218500 - AluSq SINE Alu -9 304 1 285 307 97 23 chr9 41053120 41053296 -101218148 - MER5A DNA MER1_type 0 189 1 246 253 13 38 chr9 41053731 41053810 -101217634 - MIR SINE MIR -166 96 20 1245 241 92 48 chr9 41053870 41054393 -101217051 - L1MC4 LINE L1 0 8042 7497 218 372 149 16 chr9 41054562 41054750 -101216694 + MIR SINE MIR 50 262 0 264 261 71 17 chr9 41055435 41055555 -101215889 - LTR33A LTR ERVL -344 179 35 655 291 20 72 chr9 41055612 41055959 -101215485 + MLT1K LTR MaLR 258 586 -2 2021 105 37 10 chr9 41056068 41056364 -101215080 + AluSx SINE Alu 1 304 -8 1185 172 0 9 chr9 41056434 41056655 -101214789 - AluJb SINE Alu -8 304 86 239 185 31 46 chr9 41057626 41057691 -101213753 + MIR SINE MIR 82 145 -63 568 161 198 31 chr9 41059514 41059676 -101211768 + MER53 DNA DNA 1 189 0 447 293 66 56 chr9 41059867 41060065 -101211379 + L2 LINE L2 3073 3272 0 851 206 178 0 chr9 41060075 41060289 -101211155 - MIR SINE MIR -6 256 5 180 217 0 0 chr9 41060294 41060340 -101211104 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 3665 156 25 29 chr9 41060974 41061025 -101210419 - L1MB2 LINE L1 -7 6164 6114 1622 173 17 3 chr9 41061025 41061325 -101210119 - AluSx SINE Alu -8 304 1 3665 156 25 29 chr9 41061325 41061990 -101209454 - L1MB2 LINE L1 -57 6114 5451 313 264 58 13 chr9 41062321 41062476 -101208968 - L1ME4a LINE L1 0 6121 5960 1959 115 14 11 chr9 41063070 41063357 -101208087 - AluSx SINE Alu -24 288 1 209 322 0 0 chr9 41063505 41063564 -101207880 + MIR SINE MIR 204 262 0 2031 141 0 3 chr9 41063715 41064028 -101207416 - AluSx SINE Alu 0 312 1 393 22 0 0 chr9 41064089 41064135 -101207309 + (TG)n Simple_repeat Simple_repeat 2 47 0 2691 127 42 0 chr9 41064238 41064647 -101206797 + MSTB LTR MaLR 1 426 0 2806 0 0 0 chr9 41064888 41065196 -101206248 + AluYa8 SINE Alu 1 308 -2 419 294 20 46 chr9 41065781 41065934 -101205510 - MIR3 SINE MIR -10 198 50 321 261 127 35 chr9 41066325 41066467 -101204977 - L1ME4a LINE L1 -252 5869 5715 237 297 172 0 chr9 41066608 41066753 -101204691 - L1ME4a LINE L1 -2212 3934 3765 572 295 103 67 chr9 41066799 41067264 -101204180 - L1ME4a LINE L1 -2369 3777 3296 2164 117 0 0 chr9 41067567 41067875 -101203569 - AluSx SINE Alu -4 308 1 322 317 181 34 chr9 41069088 41069381 -101202063 - MLT1K LTR MaLR -122 466 131 333 131 12 24 chr9 41069408 41069423 -101202021 + GA-rich Low_complexity Low_complexity 1 15 -68 1610 187 10 3 chr9 41069423 41069545 -101201899 + AluJo SINE Alu 6 126 -186 207 0 0 0 chr9 41069545 41069568 -101201876 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1610 187 10 3 chr9 41069568 41069745 -101201699 + AluJo SINE Alu 126 307 -5 333 131 12 24 chr9 41069745 41069813 -101201631 + GA-rich Low_complexity Low_complexity 15 83 0 255 299 66 103 chr9 41069930 41070278 -101201166 - L2 LINE L2 -96 3176 2842 243 0 0 0 chr9 41070735 41070762 -101200682 + (TA)n Simple_repeat Simple_repeat 1 27 0 311 265 69 16 chr9 41070787 41070976 -101200468 - L1ME4a LINE L1 -3 6118 5920 4257 163 61 45 chr9 41071154 41071354 -101200090 - L1MB7 LINE L1 -16 6168 5973 2075 135 0 0 chr9 41071354 41071650 -101199794 - AluSx SINE Alu -16 296 1 4257 163 61 45 chr9 41071650 41072023 -101199421 - L1MB7 LINE L1 -211 5973 5608 2133 107 13 0 chr9 41072023 41072323 -101199121 + AluSg SINE Alu 1 304 -6 4257 163 61 45 chr9 41072323 41072478 -101198966 - L1MB7 LINE L1 -576 5608 5457 2059 125 13 19 chr9 41072478 41072791 -101198653 - AluJo SINE Alu -1 311 1 4257 163 61 45 chr9 41072791 41073082 -101198362 - L1MB7 LINE L1 -727 5457 5123 1975 120 40 0 chr9 41073131 41073431 -101198013 - AluSx SINE Alu 0 312 1 490 291 52 24 chr9 41073851 41074061 -101197383 + MIR SINE MIR 37 252 -10 231 346 95 34 chr9 41074549 41074728 -101196716 + MIR3 SINE MIR 1 190 -18 285 303 16 33 chr9 41075004 41075126 -101196318 + L2 LINE L2 2638 2757 -557 428 269 70 9 chr9 41075887 41076050 -101195394 - MIR3 SINE MIR -23 185 15 362 297 14 26 chr9 41076184 41076356 -101195088 + GA-rich Low_complexity Low_complexity 1 288 0 183 326 22 0 chr9 41076704 41076750 -101194694 + L3 LINE CR1 1519 1565 -12 226 351 53 0 chr9 41076928 41077022 -101194422 - MIR3 SINE MIR 0 208 110 225 180 0 62 chr9 41077653 41077831 -101193613 + (TGG)n Simple_repeat Simple_repeat 3 169 0 305 356 6 6 chr9 41077868 41078045 -101193399 + (TGG)n Simple_repeat Simple_repeat 2 178 0 545 281 0 27 chr9 41078075 41078158 -101193286 + (TGG)n Simple_repeat Simple_repeat 1 85 -95 2029 209 25 39 chr9 41078158 41078670 -101192774 - MLT1D LTR MaLR 0 505 1 545 281 0 27 chr9 41078670 41078771 -101192673 + (TGG)n Simple_repeat Simple_repeat 85 180 0 1971 125 7 0 chr9 41079087 41079376 -101192068 + AluSx SINE Alu 1 291 -21 338 328 138 0 chr9 41080695 41080782 -101190662 - MIR SINE MIR -10 252 178 1717 149 4 4 chr9 41080782 41081063 -101190381 - AluSx SINE Alu -31 281 1 338 328 138 0 chr9 41081063 41081149 -101190295 - MIR SINE MIR -84 178 55 479 229 169 60 chr9 41081898 41082049 -101189395 + L2 LINE L2 2851 2984 -329 183 42 0 0 chr9 41082049 41082073 -101189371 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 479 229 169 60 chr9 41082073 41082188 -101189256 + L2 LINE L2 2984 3146 -167 1325 135 38 135 chr9 41082188 41082581 -101188863 - LTR37B LTR ERV1 0 468 114 448 240 71 26 chr9 41082582 41082736 -101188708 + MER3 DNA MER1_type 1 161 -48 215 188 62 16 chr9 41082754 41083167 -101188277 + (TTATA)n Simple_repeat Simple_repeat 4 137 0 250 135 54 14 chr9 41082810 41082849 -101188595 + (TA)n Simple_repeat Simple_repeat 1 37 -40 1523 199 0 3 chr9 41082849 41083135 -101188309 + AluSx SINE Alu 1 285 -27 250 135 54 14 chr9 41083135 41083169 -101188275 + (TA)n Simple_repeat Simple_repeat 37 77 0 330 165 38 0 chr9 41083205 41083284 -101188160 + MER3 DNA MER1_type 128 209 0 280 160 20 0 chr9 41083242 41083292 -101188152 - MER3 DNA MER1_type -119 90 40 * 539 234 66 36 chr9 41083367 41083534 -101187910 + L2 LINE L2 3142 3313 0 220 185 15 46 chr9 41084101 41084166 -101187278 + CT-rich Low_complexity Low_complexity 3 65 0 189 252 243 0 chr9 41084599 41084710 -101186734 - MIR3 SINE MIR -60 148 11 537 277 43 0 chr9 41085122 41085263 -101186181 - MIR3 SINE MIR -21 187 41 205 161 0 0 chr9 41085312 41085343 -101186101 + (CATCT)n Simple_repeat Simple_repeat 3 33 0 296 151 68 55 chr9 41085901 41085974 -101185470 - MLT1K LTR MaLR -5 583 510 3592 167 30 37 chr9 41087402 41087975 -101183469 - L1MB3 LINE L1 -7 6176 5608 1437 153 24 103 chr9 41087975 41088315 -101183129 - AluYb8 SINE Alu -5 313 1 3592 167 30 37 chr9 41088315 41088476 -101182968 - L1MB3 LINE L1 -575 5608 5447 203 250 95 17 chr9 41089072 41089188 -101182256 + L2 LINE L2 1980 2104 -1210 401 279 6 51 chr9 41090405 41090563 -101180881 - L2 LINE L2 -912 2402 2252 669 207 8 117 chr9 41090565 41090821 -101180623 - MLT1K LTR MaLR 0 588 361 941 306 50 62 chr9 41091713 41092279 -101179165 - L1MC4a LINE L1 -4 6117 5559 339 323 89 13 chr9 41092398 41092556 -101178888 - L1MC4a LINE L1 -2258 5550 5381 491 281 137 28 chr9 41092589 41093019 -101178425 - L1ME LINE L1 -304 6097 5621 324 256 23 83 chr9 41093609 41093742 -101177702 - L1ME LINE L1 -4323 2103 1979 282 29 0 0 chr9 41093762 41093797 -101177647 + (TG)n Simple_repeat Simple_repeat 2 36 0 1898 112 65 10 chr9 41093953 41094247 -101177197 - AluSx SINE Alu -1 311 2 930 130 68 7 chr9 41094275 41094419 -101177025 - MER30B DNA MER1_type 0 230 78 6455 158 168 26 chr9 41094419 41095949 -101175495 + MER52A LTR ERV1 1 1755 0 536 95 0 0 chr9 41095950 41096024 -101175420 - MER30B DNA MER1_type -113 77 4 358 213 12 0 chr9 41096027 41096107 -101175337 - L1ME2 LINE L1 -39 6125 6045 937 110 7 7 chr9 41096112 41096248 -101175196 + U8 snRNA snRNA 1 136 0 3015 189 27 24 chr9 41096290 41096961 -101174483 - L1ME2 LINE L1 -112 6052 5380 596 129 139 0 chr9 41097047 41097148 -101174296 - AluJo SINE Alu -177 135 21 478 291 116 69 chr9 41097150 41097556 -101173888 - L1ME2 LINE L1 -1054 5092 4650 2366 187 87 13 chr9 41097556 41098026 -101173418 + MLT1D LTR MaLR 1 505 0 478 291 116 69 chr9 41098026 41098150 -101173294 - L1ME2 LINE L1 -1496 4650 4533 928 252 22 0 chr9 41098218 41098440 -101173004 - LTR16C LTR ERVL -9 482 256 1066 254 134 20 chr9 41098749 41099151 -101172293 + LTR16C LTR ERVL 44 491 0 305 211 18 0 chr9 41100076 41100133 -101171311 - MIR SINE MIR -69 139 82 1709 174 11 14 chr9 41100445 41100761 -101170683 + AluJb SINE Alu 1 315 0 393 332 97 0 chr9 41101109 41101326 -101170118 - L1ME4a LINE L1 -282 5839 5602 231 222 0 0 chr9 41101455 41101500 -101169944 + MIR SINE MIR 108 152 -110 2146 135 3 6 chr9 41101520 41101832 -101169612 - AluSq SINE Alu -2 311 1 230 303 15 15 chr9 41101976 41102042 -101169402 - L2 LINE L2 -21 3292 3227 362 326 53 8 chr9 41102441 41102573 -101168871 - MIR SINE MIR -39 223 86 218 234 52 91 chr9 41103090 41103167 -101168277 + MIR SINE MIR 30 103 -105 224 264 164 27 chr9 41103306 41103416 -101168028 + L2 LINE L2 3147 3271 -1 308 338 58 0 chr9 41103602 41103741 -101167703 + L2 LINE L2 3104 3250 -22 1834 150 11 72 chr9 41103973 41104254 -101167190 - MLT1A1 LTR MaLR 0 365 111 2422 112 0 0 chr9 41104254 41104559 -101166885 - AluSx SINE Alu -7 305 1 1834 150 11 72 chr9 41104559 41104651 -101166793 - MLT1A1 LTR MaLR -254 111 15 590 260 276 0 chr9 41104747 41104928 -101166516 + MIR SINE MIR 27 257 -5 2477 85 3 0 chr9 41105046 41105351 -101166093 + AluSp SINE Alu 1 306 -7 448 180 63 36 chr9 41105395 41105506 -101165938 - MIR3 SINE MIR -81 127 14 430 278 113 14 chr9 41105906 41106118 -101165326 + L2 LINE L2 2555 2787 -527 720 80 0 0 chr9 41106142 41106230 -101165214 + AluSc SINE Alu 2 89 -220 1762 200 145 20 chr9 41106392 41106841 -101164603 - MLT1D LTR MaLR 0 505 1 710 218 94 59 chr9 41108184 41108390 -101163054 - MIR SINE MIR -14 248 37 349 234 95 108 chr9 41108423 41108581 -101162863 - MIR3 SINE MIR -17 191 36 864 238 48 65 chr9 41109053 41109406 -101162038 - L1ME3A LINE L1 -219 5951 5605 416 186 152 28 chr9 41109468 41109613 -101161831 - LTR50 LTR ERVL -617 178 16 192 313 62 80 chr9 41109706 41109994 -101161450 + L2 LINE L2 2833 3115 -157 333 269 198 44 chr9 41110092 41110211 -101161233 - L1ME4a LINE L1 -72 6049 5950 1511 181 10 47 chr9 41110211 41110510 -101160934 - AluJo SINE Alu -24 288 1 333 269 198 44 chr9 41110510 41110617 -101160827 - L1ME4a LINE L1 -171 5950 5788 529 270 87 61 chr9 41111024 41111455 -101159989 - L1ME4a LINE L1 -376 5745 5301 264 333 139 14 chr9 41111538 41111682 -101159762 + L2 LINE L2 3106 3267 -5 266 241 259 0 chr9 41111781 41111889 -101159555 - L2 LINE L2 0 3272 3137 746 233 23 51 chr9 41112003 41112218 -101159226 - MER58C DNA MER1_type -6 209 1 317 157 229 36 chr9 41112227 41112310 -101159134 - MIR3 SINE MIR -6 202 104 299 227 128 50 chr9 41113099 41113240 -101158204 + MIR3 SINE MIR 47 198 -10 218 358 8 0 chr9 41113532 41113655 -101157789 + (TG)n Simple_repeat Simple_repeat 1 124 0 391 214 149 91 chr9 41113867 41113965 -101157479 - MER5A DNA MER1_type 0 189 77 1867 182 0 19 chr9 41113965 41114272 -101157172 - AluJo SINE Alu -11 301 1 391 214 149 91 chr9 41114272 41114327 -101157117 - MER5A DNA MER1_type -112 77 27 1048 211 4 40 chr9 41114383 41114455 -101156989 + MER58A DNA MER1_type 5 78 -2342 944 210 17 6 chr9 41114455 41114631 -101156813 - MER45A DNA AcHobo 0 178 1 1048 211 4 40 chr9 41114631 41114786 -101156658 + MER58A DNA MER1_type 78 224 0 447 219 70 15 chr9 41114803 41114958 -101156486 - MER5B DNA MER1_type -7 171 15 707 250 103 0 chr9 41115948 41116132 -101155312 - MIR SINE MIR -52 210 8 2273 121 0 0 chr9 41117105 41117402 -101154042 + AluSg SINE Alu 1 297 -13 680 101 28 0 chr9 41117428 41117537 -101153907 + CT-rich Low_complexity Low_complexity 4 115 0 2189 142 3 0 chr9 41117537 41117846 -101153598 - AluSx SINE Alu -2 310 1 443 225 81 9 chr9 41117957 41118068 -101153376 + LTR34 LTR ERV1 48 166 -533 686 222 46 42 chr9 41118241 41118457 -101152987 + LTR33 LTR ERVL 1 217 -304 1379 189 0 0 chr9 41118517 41118739 -101152705 - AluSx SINE Alu -90 222 1 2143 115 0 0 chr9 41118797 41119075 -101152369 + AluSg SINE Alu 1 278 -32 251 0 59 0 chr9 41119078 41119112 -101152332 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 314 224 13 0 chr9 41119118 41119194 -101152250 + LTR33 LTR ERVL 328 404 -117 3137 93 83 4 chr9 41119503 41119998 -101151446 + LTR34 LTR ERV1 166 699 0 1300 227 59 59 chr9 41120049 41120219 -101151225 + MLT1J LTR MaLR 52 221 -290 2316 104 7 3 chr9 41120219 41120526 -101150918 + AluSc SINE Alu 1 308 -1 1300 227 59 59 chr9 41120526 41120778 -101150666 + MLT1J LTR MaLR 220 474 -37 469 82 0 0 chr9 41120826 41120887 -101150557 + LTR10A LTR ERV1 1 61 -548 964 83 0 8 chr9 41120900 41121033 -101150411 - LTR10A LTR ERV1 -62 547 416 309 294 20 10 chr9 41121976 41122078 -101149366 + MIR SINE MIR 45 147 -61 419 192 150 31 chr9 41122556 41122698 -101148746 + MIR SINE MIR 36 192 -63 356 304 91 18 chr9 41123790 41124010 -101147434 + MER113 DNA MER1_type? 245 480 -41 848 223 0 12 chr9 41124095 41124261 -101147183 - FRAM SINE Alu -2 164 1 245 254 65 162 chr9 41124320 41124505 -101146939 - MIR3 SINE MIR -5 203 37 219 184 161 69 chr9 41125494 41125581 -101145863 - MIR SINE MIR -50 212 118 222 37 0 0 chr9 41125908 41125935 -101145509 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1387 81 17 0 chr9 41126819 41126993 -101144451 - AluSx SINE Alu -135 177 1 6559 186 25 8 chr9 41126993 41127209 -101144235 - L1 LINE L1 -2356 3790 3579 2617 71 0 0 chr9 41127209 41127517 -101143927 - AluY SINE Alu -3 308 1 6559 186 25 8 chr9 41127517 41128737 -101142707 - L1 LINE L1 -2567 3579 2330 2511 217 104 31 chr9 41128761 41129080 -101142364 + L1ME1 LINE L1 4811 5105 -1061 2123 109 0 11 chr9 41129080 41129392 -101142052 + AluSx SINE Alu 6 312 0 2511 217 104 31 chr9 41129392 41130340 -101141104 + L1ME1 LINE L1 5105 6161 -5 404 297 63 33 chr9 41130510 41130804 -101140640 + L2 LINE L2 2778 3077 -195 499 285 35 0 chr9 41130830 41130974 -101140470 + MIR SINE MIR 106 254 -8 189 286 0 0 chr9 41131098 41131140 -101140304 + L2 LINE L2 3136 3177 -95 262 239 28 14 chr9 41131163 41131234 -101140210 - L2 LINE L2 -5 3308 3237 577 198 141 22 chr9 41131269 41131435 -101140009 + MIR SINE MIR 13 178 -54 1391 124 0 0 chr9 41131439 41131632 -101139812 - AluSg/x SINE Alu 0 312 120 4346 29 0 15 chr9 41131732 41132213 -101139231 + SVA Other Other 913 1386 0 272 268 0 37 chr9 41132557 41132639 -101138805 - LTR16C LTR ERVL 0 491 413 235 173 96 0 chr9 41133166 41133218 -101138226 - L1ME3 LINE L1 -12 6150 6094 2497 89 0 0 chr9 41133301 41133603 -101137841 + AluSx SINE Alu 1 302 -10 2346 285 37 7 chr9 41133918 41134045 -101137399 - ERVL LTR ERVL -436 5328 5206 2471 71 0 3 chr9 41134045 41134355 -101137089 - AluY SINE Alu -2 309 1 2346 285 37 7 chr9 41134355 41134963 -101136481 - ERVL LTR ERVL -558 5206 4571 608 322 8 19 chr9 41135343 41135604 -101135840 - MLT2E LTR ERVL -14 614 357 229 296 6 111 chr9 41135682 41135844 -101135600 - MLT2E LTR ERVL -483 145 1 314 254 0 0 chr9 41135844 41135911 -101135533 + L1ME4a LINE L1 5745 5811 -310 1461 201 19 79 chr9 41135911 41136328 -101135116 - MLT2C1 LTR ERVL 0 397 6 241 339 35 0 chr9 41136479 41136653 -101134791 + L1ME4a LINE L1 5939 6118 -3 251 277 24 0 chr9 41137941 41138024 -101133420 + GA-rich Low_complexity Low_complexity 2 86 0 203 348 134 0 chr9 41138139 41138251 -101133193 - L2 LINE L2 -24 3248 3122 229 261 31 0 chr9 41138286 41138351 -101133093 + L2 LINE L2 3188 3254 -18 188 382 0 0 chr9 41138371 41138447 -101132997 - L2 LINE L2 -12 3301 3226 333 295 114 42 chr9 41138713 41138906 -101132538 + MLT1I LTR MaLR 160 366 -43 374 226 69 101 chr9 41139824 41140130 -101131314 + LTR67 LTR ERVL 255 550 -7 280 303 156 16 chr9 41140500 41140622 -101130822 + MER5A DNA MER1_type 3 141 -48 356 324 131 12 chr9 41141027 41141271 -101130173 - L2 LINE L2 -832 2482 2210 210 71 0 0 chr9 41141449 41141477 -101129967 + (CAGTT)n Simple_repeat Simple_repeat 5 32 0 206 227 0 0 chr9 41141509 41141553 -101129891 - L2 LINE L2 -8 3305 3262 674 314 114 36 chr9 41141961 41142346 -101129098 - L3 LINE CR1 -117 1460 1046 577 229 0 0 chr9 41142621 41142730 -101128714 + MER5A DNA MER1_type 4 112 -77 2509 173 7 12 chr9 41142762 41143190 -101128254 - MSTB LTR MaLR 0 426 1 333 337 122 3 chr9 41143261 41143572 -101127872 + L2 LINE L2 2686 3041 -231 1217 222 60 106 chr9 41143607 41144062 -101127382 + MLT2B1 LTR ERVL 1 520 0 232 342 250 0 chr9 41144092 41144212 -101127232 + L2 LINE L2 3107 3256 -16 291 210 30 140 chr9 41144813 41144913 -101126531 + MER91A DNA MER1_type 1 89 -101 251 140 0 60 chr9 41144955 41145005 -101126439 + MER91B DNA MER1_type 84 130 -60 25 0 0 0 chr9 41145631 41145656 -101125788 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr9 41145885 41145913 -101125531 + GC_rich Low_complexity Low_complexity 1 28 0 2821 90 21 78 chr9 41145964 41146730 -101124714 + SVA Other Other 393 868 -520 262 200 67 44 chr9 41146894 41146984 -101124460 + MIR3 SINE MIR 87 178 -30 469 297 97 0 chr9 41147364 41147529 -101123915 - MIR SINE MIR -8 254 74 604 197 72 7 chr9 41148640 41148792 -101122652 + Charlie8 DNA MER1_type 39 200 -2217 294 260 120 90 chr9 41149306 41149430 -101122014 + L2 LINE L2 2951 3070 -202 4277 92 0 0 chr9 41149430 41149984 -101121460 + MER41A LTR ERV1 1 554 0 294 260 120 90 chr9 41149984 41150159 -101121285 + L2 LINE L2 3070 3259 -13 1941 141 23 0 chr9 41150196 41150501 -101120943 + AluJb SINE Alu 1 312 0 341 284 132 53 chr9 41150519 41150709 -101120735 + MIR SINE MIR 37 241 -21 242 359 0 13 chr9 41150748 41150826 -101120618 - MIR SINE MIR -90 118 42 216 276 122 49 chr9 41151418 41151541 -101119903 + MIR3 SINE MIR 15 146 -62 314 245 226 0 chr9 41151561 41151663 -101119781 - L2 LINE L2 -16 3297 3173 1827 153 125 11 chr9 41152375 41152728 -101118716 - MSTD LTR MaLR -2 394 2 273 239 45 30 chr9 41152738 41152805 -101118639 - MIR3 SINE MIR -51 157 90 446 257 80 57 chr9 41152865 41153040 -101118404 - MIR SINE MIR -82 180 2 582 240 33 0 chr9 41153081 41153231 -101118213 + MER5B DNA MER1_type 1 155 -23 321 296 0 11 chr9 41153267 41153355 -101118089 - MER5A DNA MER1_type -93 96 10 694 232 30 42 chr9 41153598 41153644 -101117800 - MER96 DNA MER1_type? 0 175 130 2119 93 0 10 chr9 41153644 41153970 -101117474 - AluY SINE Alu 0 311 1 694 232 30 42 chr9 41153970 41154091 -101117353 - MER96 DNA MER1_type? -45 130 10 939 179 27 5 chr9 41154283 41154467 -101116977 + MER5A DNA MER1_type 2 189 0 195 215 154 60 chr9 41154474 41154623 -101116821 + MIR3 SINE MIR 30 192 -16 987 139 12 17 chr9 41155143 41155342 -101116102 - MSTD LTR MaLR -169 196 1 579 218 78 115 chr9 41155342 41155585 -101115859 - MIR SINE MIR -25 237 4 309 214 10 97 chr9 41155686 41155789 -101115655 + MIR SINE MIR 94 187 -75 270 195 74 4 chr9 41155939 41156025 -101115419 - MIR SINE MIR -68 140 49 1595 230 48 58 chr9 41156832 41157422 -101114022 + L1ME2 LINE L1 5588 6164 0 464 233 112 73 chr9 41157452 41157658 -101113786 + L1MC4 LINE L1 7826 8039 -3 1897 122 0 44 chr9 41157688 41157988 -101113456 - AluSq SINE Alu 0 424 141 2226 86 0 0 chr9 41157988 41158312 -101113132 - AluY SINE Alu 0 311 1 1897 122 0 44 chr9 41158312 41158448 -101112996 - AluSq SINE Alu -283 141 1 2253 110 51 25 chr9 41158472 41158827 -101112617 - THE1B LTR MaLR 0 364 1 336 293 90 12 chr9 41158846 41159013 -101112431 - L1MC/D LINE L1 -2019 5789 5610 293 245 160 0 chr9 41159037 41159131 -101112313 - MIR SINE MIR -79 129 21 1922 139 7 13 chr9 41159361 41159671 -101111773 + AluSx SINE Alu 5 312 0 4009 174 35 3 chr9 41159765 41160451 -101110993 + L1MA4 LINE L1 3 710 -4618 5907 214 35 47 chr9 41160480 41161938 -101109506 + L1MA4 LINE L1 772 2195 -4133 2039 138 0 0 chr9 41161938 41162242 -101109202 + AluSx SINE Alu 1 304 -8 5907 214 35 47 chr9 41162242 41162807 -101108637 + L1MA4 LINE L1 2195 2765 -3563 946 198 0 0 chr9 41162827 41162999 -101108445 + FRAM SINE Alu 1 166 -10 9432 153 31 18 chr9 41163002 41164183 -101107261 + L1MA4 LINE L1 3747 4912 -1485 2145 117 0 0 chr9 41164183 41164481 -101106963 + AluSx SINE Alu 1 298 -14 9432 153 31 18 chr9 41164481 41164673 -101106771 + L1MA4 LINE L1 4912 5100 -1297 1691 168 0 30 chr9 41164673 41164977 -101106467 + AluJo SINE Alu 3 297 -15 221 0 0 33 chr9 41164980 41165010 -101106434 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9432 153 31 18 chr9 41165010 41165515 -101105929 + L1MA4 LINE L1 5101 5654 -743 3812 148 14 2 chr9 41165596 41166239 -101105205 + L1MA4 LINE L1 5825 6475 -7 2812 122 69 4 chr9 41167068 41167518 -101103926 + LTR10A LTR ERV1 69 547 -62 357 232 24 12 chr9 41167807 41167889 -101103555 - MER5A DNA MER1_type -77 112 30 250 278 0 0 chr9 41167955 41168009 -101103435 + L2 LINE L2 3219 3272 0 308 214 79 11 chr9 41168017 41168106 -101103338 - MER103 DNA DNA -70 96 2 21 36 0 0 chr9 41169038 41169066 -101102378 + AT_rich Low_complexity Low_complexity 1 28 0 408 290 77 48 chr9 41169494 41169873 -101101571 + HAL1b LINE L1 351 740 -608 2357 83 0 0 chr9 41170014 41170315 -101101129 + AluY SINE Alu 1 301 -10 22 70 0 0 chr9 41170371 41170414 -101101030 + AT_rich Low_complexity Low_complexity 1 43 0 2606 159 96 11 chr9 41170680 41171201 -101100243 + L1MB4 LINE L1 5616 6180 0 450 0 0 0 chr9 41171334 41171384 -101100060 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 655 193 0 9 chr9 41171387 41171501 -101099943 - FLAM_C SINE Alu -26 117 5 1821 218 29 73 chr9 41171797 41172992 -101098452 - L1MC4 LINE L1 -262 7780 6483 1327 164 168 13 chr9 41172992 41173290 -101098154 + MER2 DNA MER2_type 1 344 0 1821 218 29 73 chr9 41173290 41173314 -101098130 - L1MC4 LINE L1 -1559 6483 6459 2117 159 19 65 chr9 41174190 41174618 -101096826 - MLT2D LTR ERVL -6 408 1 1755 198 37 26 chr9 41175037 41175416 -101096028 - MLT1B LTR MaLR -7 383 1 357 24 0 0 chr9 41176384 41176426 -101095018 + (TG)n Simple_repeat Simple_repeat 1 42 0 1540 184 11 46 chr9 41177965 41177999 -101093445 - L1MB8 LINE L1 -6 6172 6138 1783 150 155 26 chr9 41177999 41178379 -101093065 - MSTB1 LTR MaLR 0 432 4 1540 184 11 46 chr9 41178379 41178714 -101092730 - L1MB8 LINE L1 -40 6138 5816 356 333 12 29 chr9 41179428 41179599 -101091845 + L1M4 LINE L1 3717 3884 -2262 2454 136 57 2 chr9 41179744 41180145 -101091299 - MSTB1 LTR MaLR 0 419 14 274 277 143 8 chr9 41180145 41180264 -101091180 - L1MC4 LINE L1 -593 7449 7315 544 219 73 0 chr9 41180384 41180521 -101090923 - MIR SINE MIR 0 262 116 192 77 0 0 chr9 41180603 41180629 -101090815 + (A)n Simple_repeat Simple_repeat 1 26 0 1780 142 22 26 chr9 41180652 41180791 -101090653 + AluSx SINE Alu 1 139 -173 2308 86 3 0 chr9 41180791 41181095 -101090349 + AluSp SINE Alu 1 305 -8 1780 142 22 26 chr9 41181095 41181266 -101090178 + AluSx SINE Alu 139 310 -2 195 42 0 0 chr9 41182261 41182285 -101089159 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 403 277 104 42 chr9 41182375 41182635 -101088809 - MLT1J LTR MaLR -9 502 227 1116 199 99 70 chr9 41182677 41182719 -101088725 - Zaphod DNA AcHobo 0 4031 3992 1690 123 21 99 chr9 41182719 41183053 -101088391 + AluYb8 SINE Alu 1 308 -10 1116 199 99 70 chr9 41183053 41183436 -101088008 - Zaphod DNA AcHobo -39 3992 3594 1816 165 76 3 chr9 41183443 41183758 -101087686 + MER1B DNA MER1_type 1 338 -1 844 241 61 5 chr9 41183767 41183979 -101087465 + MER58A DNA MER1_type 1 224 0 2654 233 43 68 chr9 41183996 41184073 -101087371 - Zaphod DNA AcHobo -3061 970 893 2180 126 0 0 chr9 41184073 41184374 -101087070 + AluSx SINE Alu 1 301 -11 2654 233 43 68 chr9 41184374 41184473 -101086971 - Zaphod DNA AcHobo -3138 893 793 519 139 50 20 chr9 41184473 41184574 -101086870 + U13 snRNA snRNA 1 104 0 2654 233 43 68 chr9 41184574 41185312 -101086132 - Zaphod DNA AcHobo -3238 793 38 1688 199 65 8 chr9 41185312 41185684 -101085760 - MSTD LTR MaLR -2 394 2 417 20 0 0 chr9 41185686 41185736 -101085708 + (TG)n Simple_repeat Simple_repeat 1 50 0 342 0 0 0 chr9 41185735 41185773 -101085671 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 2654 233 43 68 chr9 41185736 41185815 -101085629 - Zaphod DNA AcHobo -3994 37 33 1108 189 112 45 chr9 41187821 41188133 -101083311 + MLT1D LTR MaLR 1 333 -172 1931 74 0 4 chr9 41188150 41188394 -101083050 + LTR8 LTR ERV1 1 243 -448 2964 108 5 5 chr9 41188675 41189082 -101082362 + LTR8 LTR ERV1 246 652 -39 492 165 12 0 chr9 41189091 41189176 -101082268 + MLT1D LTR MaLR 371 456 -49 3581 147 7 17 chr9 41189183 41189402 -101082042 + MER50 LTR ERV1 1 221 -513 2017 122 3 13 chr9 41189402 41189705 -101081739 + AluSx SINE Alu 1 300 -12 3581 147 7 17 chr9 41189705 41190064 -101081380 + MER50 LTR ERV1 221 573 -161 745 137 7 50 chr9 41190065 41190204 -101081240 - FLAM_C SINE Alu -9 134 2 819 164 13 13 chr9 41190205 41190357 -101081087 + MER50 LTR ERV1 560 711 -23 246 324 37 9 chr9 41190506 41190614 -101080830 - MIR SINE MIR -87 175 65 656 232 105 11 chr9 41190660 41190841 -101080603 + MIR3 SINE MIR 5 202 -6 1054 167 8 91 chr9 41191071 41191323 -101080121 - AluJo SINE Alu -19 293 63 743 207 157 80 chr9 41191937 41192236 -101079208 + MER115 DNA AcHobo 112 433 -260 200 261 57 34 chr9 41192371 41192459 -101078985 - L2 LINE L2 -213 3059 2970 1999 112 20 0 chr9 41192992 41193287 -101078157 + AluSx SINE Alu 1 301 -11 629 302 107 47 chr9 41193462 41193892 -101077552 - MLT1K LTR MaLR -8 580 125 292 331 39 65 chr9 41195341 41195495 -101075949 - MIR3 SINE MIR -1 207 58 262 0 53 0 chr9 41196369 41196407 -101075037 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 413 313 108 38 chr9 41196822 41197062 -101074382 + L3 LINE CR1 1306 1562 -15 368 177 0 0 chr9 41197473 41197535 -101073909 + MIR SINE MIR 89 150 -112 292 299 11 11 chr9 41197608 41197695 -101073749 + MER117 DNA MER1_type 111 197 0 300 53 0 0 chr9 41197870 41197908 -101073536 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 2039 141 0 0 chr9 41197927 41198239 -101073205 - AluSx SINE Alu 0 312 1 344 353 72 14 chr9 41198604 41198825 -101072619 + L2 LINE L2 2817 3050 -222 1674 151 52 119 chr9 41199219 41199682 -101071762 - MSTB1 LTR MaLR 0 432 1 2169 129 45 3 chr9 41199915 41200249 -101071195 + MER7A DNA MER2_type 1 346 0 428 198 96 108 chr9 41200394 41200551 -101070893 + MIR SINE MIR 78 232 -30 2265 87 3 0 chr9 41200645 41200943 -101070501 - AluSp SINE Alu -14 299 1 999 98 0 0 chr9 41200945 41201077 -101070367 - AluSp SINE Alu -181 132 1 1637 176 6 29 chr9 41201077 41201390 -101070054 - AluJb SINE Alu -6 306 1 2071 221 65 25 chr9 41201408 41201934 -101069510 - MLT1H LTR MaLR -2 547 1 1020 275 64 38 chr9 41202621 41202966 -101068478 + MLT1H LTR MaLR 1 354 -195 322 167 167 24 chr9 41202949 41203033 -101068411 + MLT1I LTR MaLR 281 376 -33 * 446 301 41 53 chr9 41203120 41203347 -101068097 + L2 LINE L2 2800 3023 -249 225 188 0 0 chr9 41203417 41203465 -101067979 + (TA)n Simple_repeat Simple_repeat 2 49 0 2381 136 20 83 chr9 41203524 41203596 -101067848 - MSTA LTR MaLR 0 428 353 1792 109 8 4 chr9 41203596 41203852 -101067592 + AluSq SINE Alu 1 257 -56 2381 136 20 83 chr9 41203852 41204236 -101067208 - MSTA LTR MaLR -75 353 1 222 224 224 0 chr9 41204294 41204352 -101067092 + L2 LINE L2 3201 3271 -1 195 42 0 0 chr9 41204556 41204580 -101066864 + (A)n Simple_repeat Simple_repeat 1 24 0 364 318 24 65 chr9 41205250 41205420 -101066024 + L2 LINE L2 3109 3271 -1 255 266 55 9 chr9 41205434 41205543 -101065901 - L1ME4a LINE L1 -67 6054 5941 2235 82 3 13 chr9 41205562 41205868 -101065576 - AluY SINE Alu -8 303 1 482 283 115 45 chr9 41205888 41206174 -101065270 - L1ME4a LINE L1 -263 5858 5553 209 273 20 61 chr9 41206301 41206400 -101065044 + MIR SINE MIR 108 202 -60 195 269 108 21 chr9 41206767 41206860 -101064584 + MIR3 SINE MIR 87 187 -21 369 275 33 50 chr9 41207188 41207308 -101064136 + MIR SINE MIR 145 262 0 221 301 107 10 chr9 41207633 41207736 -101063708 + L2 LINE L2 3140 3252 -20 521 340 0 6 chr9 41207736 41207895 -101063549 - L2 LINE L2 0 3313 3156 284 315 161 0 chr9 41208351 41208500 -101062944 - L2 LINE L2 -469 2845 2673 219 280 0 0 chr9 41208780 41208830 -101062614 + G-rich Low_complexity Low_complexity 3 52 0 204 163 23 0 chr9 41209169 41209212 -101062232 + (TAA)n Simple_repeat Simple_repeat 2 45 0 537 231 124 24 chr9 41209314 41209483 -101061961 + L2 LINE L2 3128 3313 0 359 275 34 54 chr9 41209482 41209631 -101061813 - L3 LINE CR1 -115 1462 1317 * 223 274 306 8 chr9 41209735 41209859 -101061585 - L3 LINE CR1 -429 1148 988 1213 225 60 67 chr9 41210091 41210659 -101060785 + L1MEc LINE L1 2080 2604 -3611 1906 144 3 3 chr9 41210659 41210957 -101060487 - AluJo SINE Alu -6 306 9 1213 225 60 67 chr9 41210957 41211049 -101060395 + L1MEc LINE L1 2604 2695 -3520 2167 110 7 0 chr9 41211244 41211553 -101059891 + AluSx SINE Alu 1 311 -1 1098 276 43 18 chr9 41211598 41212049 -101059395 + L1MDa LINE L1 1809 2311 -4410 9049 129 22 19 chr9 41212064 41213077 -101058367 - L1MA3 LINE L1 0 6305 5296 2085 106 0 3 chr9 41213077 41213403 -101058041 - AluSq SINE Alu 0 325 1 9049 129 22 19 chr9 41213403 41214660 -101056784 - L1MA3 LINE L1 -1009 5296 4012 2125 119 0 0 chr9 41214660 41214954 -101056490 - AluSx SINE Alu -18 294 1 9049 129 22 19 chr9 41214954 41215183 -101056261 - L1MA3 LINE L1 -2293 4012 3785 226 188 20 0 chr9 41216100 41216201 -101055243 + (TA)n Simple_repeat Simple_repeat 1 103 0 1936 116 7 10 chr9 41216205 41216498 -101054946 - AluSx SINE Alu -20 292 1 1301 260 85 16 chr9 41216559 41216982 -101054462 + LTR16B LTR ERVL 1 452 -12 3251 299 55 35 chr9 41216998 41218390 -101053054 + HERV16 LTR ERVL 12 1431 -3565 1768 191 31 28 chr9 41218482 41218839 -101052605 + MLT1A2 LTR MaLR 1 358 -16 1200 201 18 0 chr9 41218840 41219064 -101052380 + MLT2B3 LTR ERVL 5 232 -322 873 206 50 40 chr9 41219082 41219281 -101052163 - MLT1A2 LTR MaLR -85 289 89 1581 172 10 17 chr9 41219285 41219576 -101051868 + MLT2B3 LTR ERVL 251 539 -15 801 310 41 21 chr9 41219617 41219907 -101051537 + HERV16 LTR ERVL 1614 1909 -3087 1417 196 57 0 chr9 41219919 41220184 -101051260 - MER58 DNA MER1_type -59 282 3 276 280 0 13 chr9 41220868 41220943 -101050501 - Charlie8 DNA MER1_type -3 2414 2341 2115 127 0 0 chr9 41220996 41221303 -101050141 - AluSx SINE Alu -5 307 1 267 286 0 0 chr9 41221351 41221407 -101050037 - Charlie8 DNA MER1_type -2360 57 2 463 264 17 46 chr9 41221477 41221651 -101049793 - MIR3 SINE MIR -37 171 3 471 293 111 50 chr9 41222443 41222723 -101048721 + L3 LINE CR1 1257 1553 -24 215 319 159 0 chr9 41223681 41223750 -101047694 + L2 LINE L2 3111 3190 -82 469 215 131 12 chr9 41223908 41224189 -101047255 + LTR16A1 LTR ERVL 145 437 -20 197 267 67 0 chr9 41224244 41224304 -101047140 - MIR3 SINE MIR -28 180 117 2763 129 54 0 chr9 41224324 41224767 -101046677 - MER41E LTR ERV1 -45 467 1 441 0 0 0 chr9 41224804 41224853 -101046591 + (TG)n Simple_repeat Simple_repeat 1 49 0 204 326 43 0 chr9 41225866 41225958 -101045486 + MIR SINE MIR 30 125 -83 201 333 81 0 chr9 41225994 41226081 -101045363 - L2 LINE L2 -39 3233 3140 907 188 21 5 chr9 41226316 41226502 -101044942 + MER5A DNA MER1_type 1 189 0 223 261 46 59 chr9 41227260 41227413 -101044031 - L2 LINE L2 -292 2980 2830 393 266 39 16 chr9 41227987 41228115 -101043329 + MIR3 SINE MIR 30 160 -48 916 227 22 4 chr9 41230207 41230436 -101041008 + L2 LINE L2 2831 3063 -250 1020 155 0 30 chr9 41230462 41230662 -101040782 - AluJb SINE Alu 0 312 119 467 291 133 0 chr9 41230666 41230831 -101040613 + L2 LINE L2 3127 3313 0 1215 83 171 10 chr9 41230849 41230950 -101040494 + MER30 DNA MER1_type 2 85 -145 197 33 33 0 chr9 41230950 41230980 -101040464 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1215 83 171 10 chr9 41230980 41231071 -101040373 + MER30 DNA MER1_type 85 225 -5 495 248 25 0 chr9 41231403 41231524 -101039920 + MIR SINE MIR 88 211 -51 2372 246 10 12 chr9 41231636 41232152 -101039292 - LTR40a LTR ERVL -2 517 3 357 274 205 42 chr9 41232646 41232905 -101038539 - L2 LINE L2 -4 3268 2968 465 229 52 7 chr9 41233051 41233204 -101038240 - L1ME4a LINE L1 0 6121 5962 180 262 0 24 chr9 41234472 41234514 -101036930 + L3b LINE CR1 1522 1562 -21 453 330 178 23 chr9 41235032 41235593 -101035851 + L2 LINE L2 2395 3042 -230 2594 171 39 8 chr9 41235640 41236130 -101035314 + MLT1D LTR MaLR 1 505 0 1961 112 7 0 chr9 41236457 41236760 -101034684 + AluSx SINE Alu 2 306 0 260 264 127 18 chr9 41236852 41236962 -101034482 - MIR3 SINE MIR -3 205 84 604 245 88 19 chr9 41237006 41237165 -101034279 - MIR SINE MIR -91 171 2 454 348 0 11 chr9 41238012 41238279 -101033165 + (CA)n Simple_repeat Simple_repeat 1 264 0 429 246 102 55 chr9 41238799 41238963 -101032481 - MIR SINE MIR -54 208 38 215 183 48 39 chr9 41240302 41240406 -101031038 + (TCTA)n Simple_repeat Simple_repeat 3 107 0 312 268 123 72 chr9 41240407 41240683 -101030761 - L1MEd LINE L1 -4875 1244 955 209 290 32 43 chr9 41240734 41240827 -101030617 + L2 LINE L2 2261 2352 -962 294 260 103 59 chr9 41240885 41241067 -101030377 - MLT1J LTR MaLR -196 315 159 229 360 10 20 chr9 41242297 41242397 -101029047 + MIR SINE MIR 19 117 -91 622 220 74 184 chr9 41242548 41242994 -101028450 - L2 LINE L2 -2 3270 2874 348 233 187 15 chr9 41243883 41244018 -101027426 - MIR3 SINE MIR -19 189 35 1824 254 97 23 chr9 41244231 41244850 -101026594 + L1MEc LINE L1 498 1162 -5234 1410 236 163 2 chr9 41244843 41245279 -101026165 + L1ME1 LINE L1 5598 6103 -63 * 1408 162 41 68 chr9 41245295 41245634 -101025810 + L1MD2 LINE L1 6011 6340 -19 245 252 301 31 chr9 41246198 41246424 -101025020 + LTR67 LTR ERVL 2 288 -269 2381 240 105 31 chr9 41246592 41247366 -101024078 - L2 LINE L2 -123 3190 2475 1315 209 84 50 chr9 41247366 41247725 -101023719 + MLT1A2 LTR MaLR 1 371 -3 2381 240 105 31 chr9 41247725 41247940 -101023504 - L2 LINE L2 -838 2475 2277 14430 144 16 42 chr9 41247940 41248292 -101023152 - Tigger1 DNA MER2_type 0 2418 2059 1464 114 0 0 chr9 41248292 41248493 -101022951 + AluSx SINE Alu 1 201 -111 14430 144 16 42 chr9 41248493 41248605 -101022839 - Tigger1 DNA MER2_type -359 2059 1946 2181 92 0 0 chr9 41248605 41248922 -101022522 - AluSx SINE Alu 0 317 1 14430 144 16 42 chr9 41248922 41249346 -101022098 - Tigger1 DNA MER2_type -472 1946 1513 2214 83 0 40 chr9 41249346 41249670 -101021774 - AluY SINE Alu 0 311 1 14430 144 16 42 chr9 41249670 41251258 -101020186 - Tigger1 DNA MER2_type -905 1513 1 2381 240 105 31 chr9 41251258 41251441 -101020003 - L2 LINE L2 -1036 2277 1924 1040 128 26 6 chr9 41251476 41251632 -101019812 + MER70B LTR ERVL 1 159 -419 * 2533 199 36 2 chr9 41251631 41252103 -101019341 + MER70B LTR ERVL 90 577 -1 950 212 121 103 chr9 41252734 41253085 -101018359 + MLT2D LTR ERVL 2 362 -52 596 31 31 10 chr9 41253085 41253181 -101018263 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 950 212 121 103 chr9 41253181 41253235 -101018209 + MLT2D LTR ERVL 362 414 0 234 351 27 9 chr9 41253342 41253453 -101017991 + MIR3 SINE MIR 93 205 -3 241 270 38 82 chr9 41253563 41253722 -101017722 - L2 LINE L2 -271 3001 2850 509 298 86 0 chr9 41253770 41253921 -101017523 - MIR SINE MIR -79 183 20 1565 155 7 15 chr9 41255298 41255569 -101015875 - MER2 DNA MER2_type -76 269 1 411 148 111 12 chr9 41255693 41255728 -101015716 - MLT2C2 LTR ERVL 0 464 434 375 23 0 0 chr9 41255728 41255772 -101015672 + (TG)n Simple_repeat Simple_repeat 2 45 0 411 148 111 12 chr9 41255772 41255817 -101015627 - MLT2C2 LTR ERVL -30 434 376 1837 130 0 40 chr9 41257647 41257969 -101013475 + AluSx SINE Alu 1 309 -3 3334 53 0 5 chr9 41258619 41259031 -101012413 - L1PA8 LINE L1 0 6172 5763 475 65 0 0 chr9 41259031 41259093 -101012351 + L1P3 LINE L1 5656 5717 -455 335 253 99 0 chr9 41259124 41259215 -101012229 - MIR3 SINE MIR -12 196 97 201 286 71 0 chr9 41259312 41259368 -101012076 - MIR SINE MIR -55 153 94 270 221 0 52 chr9 41259422 41259576 -101011868 + CT-rich Low_complexity Low_complexity 3 148 0 797 164 0 0 chr9 41260809 41260931 -101010513 + AluSq/x SINE Alu 2 123 -189 336 249 41 29 chr9 41261563 41261703 -101009741 + MIR SINE MIR 50 149 -59 964 217 95 43 chr9 41261964 41262087 -101009357 + LTR37A LTR ERV1 41 156 -270 2153 97 0 7 chr9 41262087 41262387 -101009057 + AluSg SINE Alu 1 298 -12 964 217 95 43 chr9 41262387 41262590 -101008854 + LTR37A LTR ERV1 156 384 -42 1055 213 42 34 chr9 41262593 41262856 -101008588 - MLT1E3 LTR MaLR 0 624 360 190 333 17 0 chr9 41262875 41262935 -101008509 + L2 LINE L2 2991 3051 -221 511 262 78 21 chr9 41262941 41263082 -101008362 + MIR SINE MIR 2 150 -112 485 276 32 32 chr9 41263139 41263295 -101008149 - MIR SINE MIR -3 259 104 22 35 0 0 chr9 41263630 41263659 -101007785 + AT_rich Low_complexity Low_complexity 1 29 0 530 281 92 57 chr9 41264865 41265144 -101006300 + L1ME4a LINE L1 5125 5393 -728 1864 114 64 10 chr9 41265144 41265441 -101006003 + AluSq SINE Alu 1 313 0 530 281 92 57 chr9 41265441 41266041 -101005403 + L1ME4a LINE L1 5393 6026 -95 204 343 15 0 chr9 41266524 41266591 -101004853 + L2 LINE L2 2875 2942 -330 403 329 50 0 chr9 41266601 41266741 -101004703 - L1MEc LINE L1 -3709 2420 2274 322 347 111 27 chr9 41266898 41267160 -101004284 - L1MEc LINE L1 -4092 2218 1935 3387 59 32 0 chr9 41267278 41267716 -101003728 - L1PA8 LINE L1 -1 6171 5720 349 280 89 54 chr9 41267776 41267944 -101003500 - L1MEc LINE L1 -4579 1731 1558 1881 220 64 18 chr9 41268027 41268801 -101002643 + L1MA8 LINE L1 2926 7008 -702 6242 67 23 52 chr9 41268810 41270795 -101000649 + SVA Other Other 1 1386 0 3837 140 51 13 chr9 41270806 41271490 -100999954 + L1MA8 LINE L1 6991 7700 -10 824 163 0 15 chr9 41271595 41271730 -100999714 - FLAM_C SINE Alu 0 133 1 271 294 105 0 chr9 41271765 41271908 -100999536 - L1MEc LINE L1 -4935 1375 1218 999 228 55 94 chr9 41271915 41272310 -100999134 - L1MEc LINE L1 -4902 1217 851 1863 147 13 10 chr9 41272310 41272617 -100998827 - AluSx SINE Alu -4 308 1 999 228 55 94 chr9 41272617 41272804 -100998640 - L1MEc LINE L1 -5268 851 658 311 335 50 101 chr9 41273680 41274159 -100997285 + HAL1 LINE L1 814 1265 -1242 744 228 127 101 chr9 41274159 41274694 -100996750 + MLT1H LTR MaLR 1 549 0 311 335 50 101 chr9 41274694 41274739 -100996705 + HAL1 LINE L1 1265 1311 -1196 2668 182 15 35 chr9 41275704 41276306 -100995138 - MER68 LTR ERV1 0 605 1 247 261 29 127 chr9 41276306 41276487 -100994957 + HAL1b LINE L1 450 647 -701 2056 207 17 54 chr9 41276487 41277005 -100994439 - MLT1D LTR MaLR -2 503 5 2513 109 114 5 chr9 41277010 41277396 -100994048 - MSTA LTR MaLR 0 428 1 247 261 29 127 chr9 41277396 41277453 -100993991 + HAL1b LINE L1 651 670 -678 192 319 75 21 chr9 41278895 41278989 -100992455 + MIR SINE MIR 107 205 -57 622 270 47 82 chr9 41279157 41279476 -100991968 - MLT1K LTR MaLR -6 582 275 1658 229 78 37 chr9 41279569 41280058 -100991386 + MLT1J LTR MaLR 1 509 -2 502 199 66 22 chr9 41280392 41280528 -100990916 - MER103 DNA DNA -22 144 3 239 270 95 36 chr9 41281469 41281606 -100989838 + MIR3 SINE MIR 18 162 -46 465 187 99 0 chr9 41282841 41282932 -100988512 - MER103 DNA DNA -63 103 4 246 291 13 0 chr9 41283280 41283359 -100988085 + Charlie8 DNA MER1_type 11 90 -2327 652 255 130 0 chr9 41283714 41283875 -100987569 - MER5A DNA MER1_type 0 189 8 211 269 27 74 chr9 41283886 41284035 -100987409 - MIR SINE MIR -42 220 79 289 280 34 42 chr9 41284855 41284973 -100986471 - MIR SINE MIR -87 175 59 2384 101 49 3 chr9 41285164 41285511 -100985933 + THE1B LTR MaLR 2 364 0 2174 147 99 20 chr9 41285756 41286151 -100985293 - MSTB LTR MaLR 0 426 1 394 232 155 28 chr9 41286230 41286372 -100985072 - MIR SINE MIR -81 127 9 1859 193 28 100 chr9 41286463 41287002 -100984442 - MLT1D LTR MaLR -5 500 1 543 308 140 4 chr9 41287401 41287665 -100983779 + L2 LINE L2 2760 3055 -258 191 185 0 74 chr9 41287976 41288030 -100983414 + MIR SINE MIR 71 120 -88 493 268 179 0 chr9 41288709 41288877 -100982567 - MIR SINE MIR -14 248 51 206 272 74 37 chr9 41288993 41289074 -100982370 - MIR SINE MIR -88 174 91 1365 214 71 117 chr9 41289083 41289705 -100981739 - MLT1E LTR MaLR 0 593 1 498 267 114 62 chr9 41290981 41291574 -100979870 + L2 LINE L2 2450 3098 -174 447 262 89 62 chr9 41292418 41292563 -100978881 + MIR SINE MIR 18 174 -88 1558 174 7 21 chr9 41292563 41292879 -100978565 + AluJo SINE Alu 1 312 0 447 262 89 62 chr9 41292879 41292957 -100978487 + MIR SINE MIR 174 248 -14 199 272 163 55 chr9 41293047 41293249 -100978195 + L2 LINE L2 2054 2277 -1037 641 182 84 0 chr9 41293269 41293412 -100978032 + L1MD2 LINE L1 5884 6038 -321 5911 158 13 12 chr9 41293433 41293817 -100977627 - L1PB1 LINE L1 -1 6150 5768 333 0 0 0 chr9 41293817 41293854 -100977590 + (TG)n Simple_repeat Simple_repeat 2 38 0 5911 158 13 12 chr9 41293854 41295336 -100976108 - L1PB1 LINE L1 -383 5768 4280 2217 175 76 37 chr9 41295349 41295835 -100975609 - MLT1D LTR MaLR 0 505 1 1527 177 15 36 chr9 41295835 41296169 -100975275 + L1MD2 LINE L1 6032 6358 -1 749 101 39 62 chr9 41296176 41296201 -100975243 + FLAM_C SINE Alu 2 26 -286 2864 84 0 16 chr9 41296201 41296580 -100974864 + THE1C LTR MaLR 3 375 0 749 101 39 62 chr9 41296580 41296683 -100974761 + FLAM_C SINE Alu 26 127 -185 324 285 115 0 chr9 41297973 41298103 -100973341 + MIR SINE MIR 80 224 -38 429 291 103 96 chr9 41298316 41298714 -100972730 + L1ME LINE L1 5297 5697 -424 180 0 0 0 chr9 41299055 41299075 -100972369 + (CAG)n Simple_repeat Simple_repeat 2 21 0 366 309 86 6 chr9 41299081 41299243 -100972201 + L3 LINE CR1 1297 1471 -106 1961 167 22 50 chr9 41299336 41299676 -100971768 - MSTA LTR MaLR 0 428 153 423 0 0 0 chr9 41299676 41299723 -100971721 + (CTG)n Simple_repeat Simple_repeat 2 48 0 1961 167 22 50 chr9 41299723 41299872 -100971572 - MSTA LTR MaLR -275 153 1 384 188 0 27 chr9 41299927 41300039 -100971405 + GA-rich Low_complexity Low_complexity 3 111 0 229 291 0 0 chr9 41301163 41301218 -100970226 - MIR SINE MIR -56 206 152 294 192 0 90 chr9 41301349 41301427 -100970017 - MIR SINE MIR -108 154 84 189 0 0 0 chr9 41301898 41301919 -100969525 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 1643 166 58 4 chr9 41303181 41303458 -100967986 + AluJo SINE Alu 1 292 -20 1311 184 129 12 chr9 41304225 41304480 -100966964 - AluJo SINE Alu -16 296 12 520 298 62 11 chr9 41304840 41305018 -100966426 + MIR3 SINE MIR 19 205 -3 496 257 57 7 chr9 41305433 41305573 -100965871 - MIR SINE MIR -79 183 37 184 300 0 71 chr9 41305668 41305738 -100965706 + L2 LINE L2 3207 3271 -1 314 286 130 7 chr9 41306234 41306388 -100965056 - MIR3 SINE MIR -9 199 27 378 61 0 0 chr9 41307277 41307326 -100964118 + (TG)n Simple_repeat Simple_repeat 2 50 0 2082 136 24 0 chr9 41307481 41307820 -100963624 + MER7A DNA MER2_type 2 346 0 1450 180 243 17 chr9 41308497 41308909 -100962535 - MLT1D LTR MaLR 0 505 1 264 320 16 48 chr9 41309064 41309171 -100962273 - MIR SINE MIR -130 132 28 1979 163 59 10 chr9 41309171 41309326 -100962118 + MSTB LTR MaLR 1 147 -279 2308 103 3 0 chr9 41309326 41309626 -100961818 - AluSx SINE Alu -11 301 1 1979 163 59 10 chr9 41309626 41309876 -100961568 + MSTB LTR MaLR 147 426 0 264 320 16 48 chr9 41309876 41309893 -100961551 - MIR SINE MIR -234 28 12 195 216 0 0 chr9 41309915 41309952 -100961492 - MIR SINE MIR -115 147 111 862 240 93 5 chr9 41310074 41310365 -100961079 - L1ME1 LINE L1 0 6184 5859 1171 213 223 16 chr9 41310393 41310769 -100960675 - L1ME1 LINE L1 -4 6162 5709 * 1712 219 11 20 chr9 41310760 41311198 -100960246 - L1ME1 LINE L1 -2354 3792 3359 303 224 233 0 chr9 41311358 41311474 -100959970 + L1ME LINE L1 5683 5825 -296 646 179 57 7 chr9 41311578 41311718 -100959726 - MER45R DNA AcHobo -236 1345 1199 910 210 127 99 chr9 41311864 41312158 -100959286 - MER45R DNA AcHobo -1182 399 90 2282 121 0 0 chr9 41312158 41312455 -100958989 - AluSx SINE Alu -15 297 1 910 210 127 99 chr9 41312455 41312545 -100958899 - MER45R DNA AcHobo -1491 90 4 319 284 10 20 chr9 41312747 41312849 -100958595 + L2 LINE L2 3205 3305 -8 2866 201 19 13 chr9 41313259 41313877 -100957567 - L1MD3 LINE L1 0 7995 7374 469 338 7 0 chr9 41314273 41314412 -100957032 - MIR3 SINE MIR -34 174 35 429 257 9 9 chr9 41314843 41314956 -100956488 + L2 LINE L2 3160 3272 0 573 283 43 5 chr9 41315460 41315644 -100955800 - MIR SINE MIR -45 217 27 190 196 20 0 chr9 41315971 41316022 -100955422 - MIR SINE MIR -64 144 93 575 132 0 66 chr9 41316083 41316204 -100955240 + FLAM_A SINE Alu 29 141 -1 216 296 283 0 chr9 41316506 41316665 -100954779 + MIR SINE MIR 44 247 -15 296 270 20 20 chr9 41316795 41316895 -100954549 + MIR SINE MIR 24 123 -85 690 217 48 53 chr9 41316925 41317114 -100954330 - MIR SINE MIR -46 216 29 251 343 76 17 chr9 41317390 41317562 -100953882 + MIR3 SINE MIR 18 199 -9 1205 242 33 3 chr9 41318064 41318370 -100953074 + L1ME LINE L1 5508 5822 -348 262 246 18 0 chr9 41318496 41318553 -100952891 - Tigger7 DNA MER2_type -2247 240 183 1011 136 63 29 chr9 41318564 41318770 -100952674 - L1MA9 LINE L1 -209 6103 5891 1632 185 60 3 chr9 41318801 41319099 -100952345 + MER44D DNA MER2_type 1 315 -390 653 156 0 0 chr9 41319162 41319271 -100952173 - L1MA9 LINE L1 -422 5890 5782 1306 105 4 31 chr9 41319508 41319736 -100951708 - Tigger7 DNA MER2_type -26 2465 2244 451 333 7 0 chr9 41319768 41319915 -100951529 - L3 LINE CR1 -75 1502 1355 181 318 0 30 chr9 41319918 41319984 -100951460 - L3 LINE CR1 -1 1576 1513 207 293 26 78 chr9 41320115 41320231 -100951213 - MIR3 SINE MIR -14 194 85 383 348 39 21 chr9 41320700 41320933 -100950511 - MIR SINE MIR -6 256 20 249 33 0 0 chr9 41321046 41321076 -100950368 + (TC)n Simple_repeat Simple_repeat 2 31 0 756 184 14 104 chr9 41321083 41321295 -100950149 + MLT1A2 LTR MaLR 181 373 -1 1172 205 172 17 chr9 41321841 41322202 -100949242 - MLT1F LTR MaLR 0 542 126 6602 120 224 25 chr9 41322203 41323616 -100947828 + pTR5 LTR ERV1 743 2436 -2 586 162 7 78 chr9 41323617 41323759 -100947685 - MLT1F LTR MaLR -410 132 1 308 226 0 98 chr9 41323876 41323978 -100947466 - MLT1A2 LTR MaLR -110 264 173 775 254 46 42 chr9 41324009 41324249 -100947195 + MLT1D LTR MaLR 207 447 -58 2135 125 0 3 chr9 41324272 41324568 -100946876 - AluSx SINE Alu -12 300 6 234 210 48 0 chr9 41324577 41324639 -100946805 + MLT1D LTR MaLR 561 625 -1 259 268 99 0 chr9 41324821 41324892 -100946552 + MIR SINE MIR 34 111 -151 394 271 59 25 chr9 41324896 41325014 -100946430 - MER5B DNA MER1_type -7 171 50 213 329 24 35 chr9 41325035 41325120 -100946324 + MER5B DNA MER1_type 93 176 -2 266 308 56 9 chr9 41325124 41325231 -100946213 + MIR SINE MIR 107 218 -44 240 204 41 0 chr9 41325869 41325918 -100945526 - MER69 DNA AcHobo -3 2523 2473 403 270 46 20 chr9 41327505 41327657 -100943787 + MIR3 SINE MIR 50 205 -3 2020 120 49 0 chr9 41327709 41327993 -100943451 + AluSx SINE Alu 1 298 -14 1767 108 0 0 chr9 41328495 41328718 -100942726 + AluSx SINE Alu 1 223 -89 213 312 181 14 chr9 41328824 41328962 -100942482 + MIR SINE MIR 9 169 -93 694 288 68 51 chr9 41329052 41329465 -100941979 + MLT1J LTR MaLR 86 505 -6 2757 213 11 37 chr9 41329536 41330185 -100941259 + LTR27 LTR ERV1 1 634 -2 467 265 86 110 chr9 41330335 41330709 -100940735 + L2 LINE L2 2888 3252 -20 329 221 145 15 chr9 41331235 41331366 -100940078 - MIR3 SINE MIR -60 148 1 188 286 12 119 chr9 41331693 41331777 -100939667 + L2 LINE L2 2676 2750 -564 452 188 32 38 chr9 41331785 41331922 -100939522 + MLT1J LTR MaLR 292 476 -21 245 286 62 107 chr9 41331922 41332100 -100939344 - MER5B DNA MER1_type -8 170 1 757 167 0 8 chr9 41332242 41332368 -100939076 + FLAM_C SINE Alu 1 125 -8 1056 195 91 4 chr9 41332390 41332752 -100938692 - MLT1D LTR MaLR -83 422 1 666 301 21 46 chr9 41332784 41333066 -100938378 - Charlie8 DNA MER1_type -2141 276 2 254 308 88 38 chr9 41333546 41333705 -100937739 - LTR33A LTR ERVL -2 521 355 323 231 8 103 chr9 41333845 41333962 -100937482 + MIR SINE MIR 41 146 -62 2010 132 4 0 chr9 41334886 41335196 -100936248 + AluSx SINE Alu 1 311 0 218 54 0 27 chr9 41335290 41335327 -100936117 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 210 261 0 0 chr9 41335328 41335374 -100936070 - MER5B DNA MER1_type -131 47 2 488 272 193 17 chr9 41335402 41335703 -100935741 - L3 LINE CR1 -93 1484 1131 260 246 18 0 chr9 41336496 41336553 -100934891 - LTR67 LTR ERVL -386 171 114 25 0 0 0 chr9 41336823 41336848 -100934596 + AT_rich Low_complexity Low_complexity 1 25 0 200 256 70 12 chr9 41338073 41338159 -100933285 + MIR SINE MIR 63 153 -109 3805 56 24 0 chr9 41338559 41339060 -100932384 + LTR10D LTR ERV1 1 513 0 1613 171 27 20 chr9 41339098 41339390 -100932054 - AluJo SINE Alu -14 298 5 250 203 29 58 chr9 41339870 41339939 -100931505 - MIR3 SINE MIR -41 167 101 811 253 67 29 chr9 41340049 41340365 -100931079 - L2 LINE L2 -6 3307 2980 198 311 0 0 chr9 41340374 41340435 -100931009 + MIR3 SINE MIR 142 202 -6 1676 179 97 30 chr9 41342709 41343111 -100928333 + L1MB7 LINE L1 5734 6162 -22 2499 99 0 0 chr9 41343111 41343423 -100928021 - AluSx SINE Alu 0 312 1 239 333 48 0 chr9 41343507 41343591 -100927853 - L3 LINE CR1 -7 1570 1483 1458 130 0 52 chr9 41343993 41344223 -100927221 - AluJb SINE Alu -94 218 1 229 272 25 49 chr9 41344606 41344687 -100926757 + L3 LINE CR1 1492 1570 -7 282 116 0 0 chr9 41344764 41344807 -100926637 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1787 178 4 0 chr9 41344807 41345088 -100926356 - AluJb SINE Alu -30 282 1 238 272 76 82 chr9 41345227 41345385 -100926059 - MIR SINE MIR -5 257 101 197 246 92 0 chr9 41345743 41345808 -100925636 - L2 LINE L2 -63 3209 3139 1196 122 116 0 chr9 41345917 41346098 -100925346 - AluSg/x SINE Alu -9 303 102 1894 164 0 16 chr9 41346499 41346809 -100924635 - AluJo SINE Alu -7 305 1 551 294 65 54 chr9 41347166 41347442 -100924002 - L2 LINE L2 0 3313 3035 * 669 201 81 62 chr9 41347441 41347714 -100923730 - L2 LINE L2 -384 2930 2653 299 275 106 18 chr9 41347748 41347966 -100923478 - L2 LINE L2 -1230 2084 1848 530 317 24 6 chr9 41348180 41348347 -100923097 - MLT1J2 LTR MaLR -14 436 267 2460 76 3 7 chr9 41348365 41348669 -100922775 - AluSq SINE Alu -10 303 1 251 297 120 88 chr9 41348830 41349022 -100922422 - MLT1I LTR MaLR -147 262 65 209 237 189 68 chr9 41350657 41350847 -100920597 + L2 LINE L2 2847 3059 -213 528 272 20 20 chr9 41352094 41352241 -100919203 - MIR3 SINE MIR -46 162 16 304 244 140 46 chr9 41352456 41352674 -100918770 + MIR3 SINE MIR 2 242 -20 1879 141 0 56 chr9 41352940 41353260 -100918184 + AluJo SINE Alu 1 302 -10 462 212 27 62 chr9 41353498 41353644 -100917800 - MIR3 SINE MIR -9 199 59 445 335 97 11 chr9 41354171 41354347 -100917097 + L3 LINE CR1 1298 1488 -89 196 277 36 36 chr9 41354774 41354857 -100916587 + L2 LINE L2 3229 3311 -2 2557 63 0 3 chr9 41355009 41355309 -100916135 + AluY SINE Alu 1 299 -12 427 264 54 24 chr9 41355398 41355565 -100915879 + MLT1I LTR MaLR 225 396 -13 340 311 8 25 chr9 41357106 41357225 -100914219 - MIR3 SINE MIR 0 208 92 1562 190 65 49 chr9 41357374 41357864 -100913580 - MLT1D LTR MaLR 0 505 8 279 0 0 0 chr9 41358842 41358873 -100912571 + (CA)n Simple_repeat Simple_repeat 1 31 0 321 251 106 65 chr9 41359145 41359344 -100912100 - MIR3 SINE MIR 0 208 2 652 277 57 0 chr9 41360441 41360618 -100910826 - L3 LINE CR1 -93 1484 1298 189 0 0 0 chr9 41361303 41361324 -100910120 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 472 214 29 71 chr9 41361327 41361467 -100909977 - L1ME1 LINE L1 -18 6148 6015 1803 160 10 33 chr9 41361485 41361791 -100909653 - AluJo SINE Alu -13 299 1 27 73 0 0 chr9 41361794 41361849 -100909595 + AT_rich Low_complexity Low_complexity 1 55 0 252 265 303 32 chr9 41361908 41362093 -100909351 - MIR SINE MIR -21 241 7 440 238 230 0 chr9 41362140 41362266 -100909178 - MIR SINE MIR -74 188 34 2511 150 113 35 chr9 41362351 41362872 -100908572 - MER68 LTR ERV1 0 562 1 207 187 11 143 chr9 41363110 41363201 -100908243 + MIR SINE MIR 112 190 -72 375 78 0 0 chr9 41364650 41364701 -100906743 + (TCC)n Simple_repeat Simple_repeat 1 51 0 1815 143 4 4 chr9 41364701 41364966 -100906478 - AluJo SINE Alu -14 298 34 2264 74 3 18 chr9 41365360 41365666 -100905778 + AluY SINE Alu 1 302 0 201 318 76 0 chr9 41365704 41365770 -100905674 + MIR SINE MIR 76 146 -116 1799 164 31 3 chr9 41365821 41366114 -100905330 + AluJo SINE Alu 3 303 -9 332 316 105 7 chr9 41366960 41367112 -100904332 + MIR3 SINE MIR 13 179 -29 367 259 146 32 chr9 41368016 41368174 -100903270 + MER69A DNA AcHobo 1 176 -1 208 299 0 35 chr9 41368328 41368415 -100903029 + CT-rich Low_complexity Low_complexity 2 85 0 23 0 0 0 chr9 41368981 41369004 -100902440 + GC_rich Low_complexity Low_complexity 1 23 0 288 137 0 0 chr9 41369167 41369218 -100902226 + (CAG)n Simple_repeat Simple_repeat 1 51 0 250 255 105 33 chr9 41369400 41369553 -100901891 - MIR3 SINE MIR -21 187 24 21 0 0 0 chr9 41369591 41369612 -100901832 + AT_rich Low_complexity Low_complexity 1 21 0 243 188 16 31 chr9 41369857 41369921 -100901523 - L1MC4a LINE L1 -1875 5933 5871 273 263 66 40 chr9 41369929 41370081 -100901363 + MER104 DNA Tc2 25 180 0 225 222 0 19 chr9 41370150 41370204 -100901240 - L1M3 LINE L1 -444 5736 5684 489 250 77 65 chr9 41370862 41371214 -100900230 + L1ME4a LINE L1 5597 5952 -169 24 0 0 0 chr9 41371260 41371284 -100900160 + AT_rich Low_complexity Low_complexity 1 24 0 995 154 6 44 chr9 41371294 41371476 -100899968 - AluJo SINE Alu -40 272 98 303 272 11 22 chr9 41371582 41371674 -100899770 + L3 LINE CR1 1378 1468 -109 207 333 0 0 chr9 41372727 41372790 -100898654 + L3 LINE CR1 1307 1369 -208 269 289 76 37 chr9 41372872 41373169 -100898275 + L1MEc LINE L1 73 254 -5951 657 229 64 5 chr9 41373321 41373509 -100897935 + LTR50 LTR ERVL 441 639 -156 1896 166 0 10 chr9 41373534 41373836 -100897608 - AluJb SINE Alu -13 299 1 2385 112 0 0 chr9 41373841 41374153 -100897291 - AluSx SINE Alu 0 312 1 1258 197 69 31 chr9 41374184 41374474 -100896970 + AluJo SINE Alu 1 301 -11 1863 323 39 32 chr9 41374766 41376041 -100895403 + ERVL LTR ERVL 585 1941 -3823 273 274 95 0 chr9 41376107 41376191 -100895253 + ERVL LTR ERVL 2094 2185 -3469 2947 154 99 13 chr9 41376456 41377013 -100894431 - MER6A DNA MER2_type 0 605 1 278 408 113 10 chr9 41377135 41377552 -100893892 - L2 LINE L2 -5 3267 2808 815 189 0 0 chr9 41377733 41377865 -100893579 - FRAM SINE Alu -44 132 1 345 255 28 28 chr9 41378198 41378304 -100893140 - MIR SINE MIR -84 124 19 248 200 57 57 chr9 41378578 41378648 -100892796 + L2 LINE L2 3203 3272 0 4219 96 8 94 chr9 41378944 41379670 -100891774 - MER4A LTR ERV1 0 664 1 500 293 158 23 chr9 41379969 41380228 -100891216 + L3 LINE CR1 583 876 -701 189 161 0 0 chr9 41380933 41380964 -100890480 + L2 LINE L2 3262 3292 -21 * 672 284 85 20 chr9 41380959 41381160 -100890284 - MIR SINE MIR 0 262 49 719 163 0 16 chr9 41381483 41381606 -100889838 + MLT1B LTR MaLR 1 121 -269 781 279 109 23 chr9 41381678 41382025 -100889419 - MLT1J2 LTR MaLR -12 438 62 1030 212 33 4 chr9 41382209 41382454 -100888990 - MER68 LTR ERV1 -310 252 1 207 187 11 143 chr9 41382692 41382783 -100888661 + MIR SINE MIR 112 190 -72 2179 73 4 18 chr9 41384261 41384536 -100886908 - AluY SINE Alu -40 271 1 1832 190 0 13 chr9 41384958 41385268 -100886176 - AluJb SINE Alu -4 308 3 243 0 0 0 chr9 41385280 41385307 -100886137 + (T)n Simple_repeat Simple_repeat 1 27 0 2681 147 95 2 chr9 41385670 41386166 -100885278 - MER34 LTR ERV1 0 542 1 180 327 55 27 chr9 41386373 41386483 -100884961 + L2 LINE L2 3143 3255 -17 2204 143 68 9 chr9 41437026 41437465 -100833979 + L1P LINE L1 4781 5245 -901 715 313 62 6 chr9 41437498 41437834 -100833610 - HERVL-D LTR ERVL -5296 358 4 1055 167 34 38 chr9 41437885 41438111 -100833333 - MLT2D LTR ERVL -151 263 39 257 114 91 0 chr9 41438111 41438155 -100833289 - MLT2D LTR ERVL 0 414 367 213 254 17 0 chr9 41438156 41438215 -100833229 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 1022 276 68 56 chr9 41438271 41438756 -100832688 - MLT2B3 LTR ERVL -63 491 1 401 296 6 6 chr9 41438800 41438979 -100832465 - L1MEc LINE L1 -3595 2620 2442 929 270 58 118 chr9 41439016 41440233 -100831211 - L1MEc LINE L1 -4140 2256 1078 2573 59 0 0 chr9 41440284 41440588 -100830856 - AluY SINE Alu -7 304 1 21 0 0 0 chr9 41440598 41440619 -100830825 + AT_rich Low_complexity Low_complexity 1 21 0 382 299 125 30 chr9 41440622 41440981 -100830463 - L1MEc LINE L1 -5247 958 623 413 206 10 31 chr9 41441180 41441277 -100830167 + MER21B LTR ERV1 1 95 -768 1430 236 50 43 chr9 41441317 41441979 -100829465 + MER21B LTR ERV1 98 812 -51 276 232 12 24 chr9 41442178 41442260 -100829184 - L1MEc LINE L1 -6203 193 113 1289 249 40 38 chr9 41443865 41444045 -100827399 - L1 LINE L1 -3202 2944 2766 2282 100 0 7 chr9 41444045 41444344 -100827100 - AluSg SINE Alu -13 297 1 1289 249 40 38 chr9 41444344 41444632 -100826812 - L1 LINE L1 -3380 2766 2475 1084 299 88 16 chr9 41444869 41445707 -100825737 + L2 LINE L2 2416 3311 -2 189 0 0 0 chr9 41445893 41445914 -100825530 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 2037 230 33 27 chr9 41446290 41447032 -100824412 + L1M3d LINE L1 771 1786 -4517 1957 230 74 39 chr9 41447177 41448390 -100823054 + L1ME LINE L1 4542 5794 -370 405 154 0 0 chr9 41448410 41448475 -100822969 - MLT1E2 LTR MaLR -436 190 126 239 291 75 88 chr9 41448491 41448663 -100822781 + L2 LINE L2 2962 3130 -142 369 0 0 0 chr9 41448663 41448704 -100822740 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 291 75 88 chr9 41448704 41448826 -100822618 + L2 LINE L2 3130 3252 -20 595 260 131 11 chr9 41448881 41449242 -100822202 - L2 LINE L2 -269 3044 2639 1422 197 16 86 chr9 41449291 41449403 -100822041 - L1MC5 LINE L1 -883 7078 6960 1812 158 14 7 chr9 41449403 41449694 -100821750 - AluJo SINE Alu -19 293 1 1422 197 16 86 chr9 41449694 41450079 -100821365 - L1MC5 LINE L1 -1001 6960 6616 * 5013 247 60 25 chr9 41450077 41452296 -100819148 - L1MD1 LINE L1 -8 6234 3916 1886 124 41 7 chr9 41452296 41452587 -100818857 - AluSx SINE Alu -10 302 2 5013 247 60 25 chr9 41452587 41452891 -100818553 - L1MD1 LINE L1 -2326 3916 3624 378 0 0 0 chr9 41453283 41453325 -100818119 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 474 263 22 7 chr9 41453325 41453462 -100817982 - L1MD1 LINE L1 -2512 3634 3496 27 29 0 0 chr9 41453722 41453756 -100817688 + AT_rich Low_complexity Low_complexity 1 34 0 181 83 56 0 chr9 41453838 41453874 -100817570 + GA-rich Low_complexity Low_complexity 5 42 0 34 42 0 0 chr9 41453940 41453988 -100817456 + AT_rich Low_complexity Low_complexity 1 48 0 45 19 0 0 chr9 41454040 41454092 -100817352 + AT_rich Low_complexity Low_complexity 1 52 0 29 60 0 0 chr9 41454155 41454205 -100817239 + AT_rich Low_complexity Low_complexity 1 50 0 1241 274 89 118 chr9 41454369 41454944 -100816500 - L2 LINE L2 -342 2972 2382 1693 170 32 0 chr9 41454944 41455226 -100816218 + AluJb SINE Alu 1 291 -21 1241 274 89 118 chr9 41455226 41455396 -100816048 - L2 LINE L2 -932 2382 2209 629 211 0 9 chr9 41455396 41455505 -100815939 + FLAM_C SINE Alu 2 109 -34 1241 274 89 118 chr9 41455505 41455909 -100815535 - L2 LINE L2 -1105 2209 1750 210 146 24 0 chr9 41455979 41456020 -100815424 - MIR SINE MIR -110 152 111 191 258 161 0 chr9 41456161 41456223 -100815221 - MIR SINE MIR -139 123 52 539 337 39 5 chr9 41457028 41457233 -100814211 - MIR SINE MIR -10 252 41 184 220 0 40 chr9 41457768 41457818 -100813626 - MIR SINE MIR -114 148 101 821 172 0 0 chr9 41458040 41458168 -100813276 + AluJb SINE Alu 141 268 -44 200 299 37 19 chr9 41458197 41458304 -100813140 - L2 LINE L2 -177 3095 2987 1845 181 0 13 chr9 41458514 41458828 -100812616 - AluJb SINE Alu 0 312 3 306 0 0 0 chr9 41458840 41458874 -100812570 + (T)n Simple_repeat Simple_repeat 1 34 0 2885 145 95 2 chr9 41459238 41459734 -100811710 - MER34 LTR ERV1 0 542 1 200 333 47 31 chr9 41459934 41460063 -100811381 + L2 LINE L2 3136 3266 -6 307 176 0 40 chr9 41460798 41460893 -100810551 + L1MC/D LINE L1 5374 5464 -705 * 4482 217 55 57 chr9 41460881 41463016 -100808428 - L1ME1 LINE L1 -38 6522 4438 1931 153 7 10 chr9 41463138 41463809 -100807635 + AluJb SINE Alu 6 675 0 252 191 16 16 chr9 41463809 41463872 -100807572 - L1ME1 LINE L1 -4948 1592 1530 898 176 80 0 chr9 41463927 41464114 -100807330 - L1MB4 LINE L1 -2 6178 5977 2458 106 11 34 chr9 41464118 41464497 -100806947 - THE1C LTR MaLR -5 370 1 3452 170 52 13 chr9 41464497 41464982 -100806462 - L1MB4 LINE L1 -197 5983 5450 258 32 0 0 chr9 41464982 41465013 -100806431 + (TC)n Simple_repeat Simple_repeat 2 32 0 3452 170 52 13 chr9 41465013 41465381 -100806063 - L1MB4 LINE L1 -730 5450 5098 1684 222 95 21 chr9 41465377 41465859 -100805585 - L1ME1 LINE L1 -5826 895 378 * 930 156 7 0 chr9 41466199 41466340 -100805104 - AluSg SINE Alu -17 293 152 365 117 54 18 chr9 41466477 41466588 -100804856 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 252 339 69 62 chr9 41467154 41467428 -100804016 + L2 LINE L2 2977 3252 -20 302 287 98 42 chr9 41467619 41467762 -100803682 + L2 LINE L2 3122 3272 0 228 114 0 45 chr9 41468163 41468207 -100803237 - MIR SINE MIR -82 126 85 31 26 0 0 chr9 41468325 41468363 -100803081 + AT_rich Low_complexity Low_complexity 1 38 0 1662 169 8 0 chr9 41468363 41468629 -100802815 - L1PB3 LINE L1 -2 6152 5885 189 206 324 0 chr9 41468862 41468930 -100802514 - L2 LINE L2 0 3272 3183 233 316 13 0 chr9 41469059 41469138 -100802306 + L2 LINE L2 3188 3267 -5 278 214 168 15 chr9 41469591 41469722 -100801722 + MIR3 SINE MIR 36 186 -22 276 324 20 20 chr9 41470040 41470142 -100801302 + MIR SINE MIR 51 152 -56 794 139 15 0 chr9 41470240 41470377 -100801067 - L1 LINE L1 -1333 4813 4675 351 274 131 48 chr9 41470380 41470632 -100800812 + L2 LINE L2 2489 2761 -553 372 359 24 12 chr9 41470765 41470932 -100800512 + L2 LINE L2 2924 3092 -180 640 315 89 47 chr9 41470947 41471500 -100799944 - L1MEd LINE L1 -5262 1372 797 505 210 35 56 chr9 41471522 41471665 -100799779 - L1MEd LINE L1 -5920 622 483 2182 98 3 7 chr9 41471846 41472155 -100799289 + AluSx SINE Alu 1 308 0 22 0 0 0 chr9 41472218 41472240 -100799204 + AT_rich Low_complexity Low_complexity 1 22 0 693 248 32 50 chr9 41473440 41473722 -100797722 + LTR4 LTR ERV1 318 594 -2 972 146 0 7 chr9 41473722 41473873 -100797571 - AluSg SINE Alu -160 150 1 372 114 63 0 chr9 41474182 41474261 -100797183 + CT-rich Low_complexity Low_complexity 2 85 0 2104 134 20 0 chr9 41474287 41474593 -100796851 - AluSx SINE Alu 0 312 1 1511 176 3 30 chr9 41475011 41475306 -100796138 - AluJo SINE Alu -20 292 6 828 248 35 5 chr9 41475349 41475547 -100795897 + MIR SINE MIR 35 238 -24 230 329 47 0 chr9 41475781 41475866 -100795578 + MER91C DNA MER1_type 35 123 -17 2406 205 13 27 chr9 41476631 41477158 -100794286 + L1MB8 LINE L1 5653 6172 -6 21 0 0 0 chr9 41477689 41477710 -100793734 + AT_rich Low_complexity Low_complexity 1 21 0 364 298 99 0 chr9 41478227 41478368 -100793076 + L2 LINE L2 2722 2876 -438 2020 149 7 3 chr9 41479495 41479804 -100791640 + AluSq SINE Alu 1 310 -3 3390 127 25 0 chr9 41480198 41480687 -100790757 - L1PA10 LINE L1 -11 6157 5657 2069 202 30 91 chr9 41480750 41481408 -100790036 - MER4D LTR ERV1 -3 900 283 745 178 19 38 chr9 41481522 41481679 -100789765 - MER4E LTR ERV1 -600 179 26 1151 224 72 9 chr9 41481913 41482234 -100789210 - L1MB8 LINE L1 -5 6173 5833 2110 154 63 14 chr9 41482234 41482663 -100788781 - MER61C LTR ERV1 0 434 1 2695 190 42 33 chr9 41482663 41482802 -100788642 - L1MB8 LINE L1 -342 5836 5700 2291 85 0 20 chr9 41482802 41483096 -100788348 + AluSg SINE Alu 1 288 -22 2695 190 42 33 chr9 41483096 41484012 -100787432 - L1MB8 LINE L1 -478 5700 4766 739 285 114 36 chr9 41485347 41485720 -100785724 - MLT1G1 LTR MaLR -34 561 45 1256 164 57 36 chr9 41485756 41486036 -100785408 - L1MA5 LINE L1 -6 6294 6009 1135 232 27 8 chr9 41486109 41486368 -100785076 - AluJo SINE Alu -48 264 1 3083 203 58 44 chr9 41486369 41487480 -100783964 - L1MA5 LINE L1 -354 5946 4808 1505 193 7 27 chr9 41487593 41487894 -100783550 - AluJo SINE Alu -16 296 2 442 176 108 10 chr9 41488295 41488397 -100783047 + MSTB LTR MaLR 261 372 -54 564 189 155 11 chr9 41488415 41488569 -100782875 - MST-int LTR MaLR -963 661 463 * 6526 214 50 25 chr9 41488564 41490148 -100781296 + MSTB-int LTR MaLR 28 1651 0 425 232 10 0 chr9 41490148 41490247 -100781197 + MSTA LTR MaLR 1 100 -328 336 203 41 106 chr9 41490269 41490392 -100781052 + MSTA LTR MaLR 57 171 -257 1027 234 53 40 chr9 41490401 41490704 -100780740 + MSTA-int LTR MaLR 1345 1651 0 429 204 27 1 chr9 41490708 41490809 -100780635 + MSTA LTR MaLR 5 95 -333 245 163 23 0 chr9 41490911 41490954 -100780490 + THE1-int LTR MaLR 924 967 -613 * 690 226 201 21 chr9 41490945 41491184 -100780260 - THE1-int LTR MaLR -392 1188 907 980 233 87 7 chr9 41491188 41491476 -100779968 + MSTA LTR MaLR 66 376 -52 479 226 161 7 chr9 41491510 41491647 -100779797 - MST-int LTR MaLR -990 661 504 * 6277 217 56 30 chr9 41491642 41493225 -100778219 + MSTA-int LTR MaLR 28 1651 0 383 258 10 0 chr9 41493227 41493324 -100778120 + MSTA LTR MaLR 3 100 -328 344 262 107 0 chr9 41493369 41493472 -100777972 + MSTA LTR MaLR 58 171 -257 1106 257 0 35 chr9 41493484 41493799 -100777645 + MSTA-int LTR MaLR 1347 1650 -1 435 198 10 0 chr9 41493800 41493896 -100777548 + MSTA LTR MaLR 1 97 -331 2196 122 0 0 chr9 41494040 41494336 -100777108 + AluSc SINE Alu 1 296 -13 563 225 23 0 chr9 41494338 41494467 -100776977 - L1MA10 LINE L1 -4 6330 6199 730 252 83 42 chr9 41494475 41495044 -100776400 + L1M4 LINE L1 3767 4311 -1835 2409 64 3 0 chr9 41495044 41495339 -100776105 + AluY SINE Alu 1 296 -15 730 252 83 42 chr9 41495339 41495472 -100775972 + L1M4 LINE L1 4311 4437 -1709 2302 81 0 0 chr9 41495472 41495782 -100775662 + AluSq SINE Alu 5 314 0 730 252 83 42 chr9 41495782 41496246 -100775198 + L1M4 LINE L1 4437 5067 -1079 1530 205 179 3 chr9 41496246 41496587 -100774857 - MER57A LTR ERV1 0 403 3 730 252 83 42 chr9 41496587 41496727 -100774717 + L1M4 LINE L1 5067 5200 -946 835 175 7 0 chr9 41496729 41496866 -100774578 + FLAM_C SINE Alu 1 138 -5 195 129 0 0 chr9 41496931 41496962 -100774482 + (TA)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr9 41496966 41496989 -100774455 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2207 95 0 11 chr9 41496992 41497277 -100774167 - AluSp SINE Alu -31 282 1 924 185 58 0 chr9 41497345 41497534 -100773910 + Charlie1 DNA MER1_type 875 1074 -1687 367 179 0 0 chr9 41497552 41497619 -100773825 - L1MA10 LINE L1 -3 6331 6265 1643 216 54 14 chr9 41498467 41498837 -100772607 + MSTA LTR MaLR 1 385 -43 1495 121 26 0 chr9 41498848 41499080 -100772364 + MSTA-int LTR MaLR 13 250 -1401 1217 184 37 12 chr9 41499077 41499322 -100772122 + MSTA-int LTR MaLR 1401 1651 0 * 1533 213 29 35 chr9 41499322 41499697 -100771747 + MSTA LTR MaLR 1 373 -55 460 238 154 0 chr9 41499725 41499868 -100771576 - MST-int LTR MaLR -981 670 506 455 228 0 0 chr9 41499866 41499967 -100771477 + MSTA-int LTR MaLR 29 129 -1522 * 328 311 77 22 chr9 41501975 41502158 -100769286 + MIR SINE MIR 37 229 -33 1501 204 5 94 chr9 41502368 41502741 -100768703 - MLT1A1 LTR MaLR 0 365 26 24 53 0 0 chr9 41503047 41503085 -100768359 + AT_rich Low_complexity Low_complexity 1 38 0 2252 106 7 7 chr9 41503139 41503441 -100768003 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 41503670 41503693 -100767751 + AT_rich Low_complexity Low_complexity 1 23 0 2303 114 0 3 chr9 41504257 41504564 -100766880 - AluSx SINE Alu -6 306 1 286 335 50 16 chr9 41505359 41505541 -100765903 - MIR SINE MIR -35 227 40 313 261 246 14 chr9 41505571 41505786 -100765658 - L1MDa LINE L1 -4708 1832 1568 1706 147 82 41 chr9 41506194 41506631 -100764813 + SN5 Other centromeric 1 455 0 183 204 0 0 chr9 41506876 41506925 -100764519 + (TG)n Simple_repeat Simple_repeat 2 50 0 253 231 13 26 chr9 41507423 41507501 -100763943 + HSAT5 Satellite Satellite 9 85 -1 286 211 0 28 chr9 41507690 41507761 -100763683 + HSAT5 Satellite Satellite 17 85 -1 290 279 0 12 chr9 41507802 41507888 -100763556 + HSAT5 Satellite Satellite 1 85 -1 650 220 47 0 chr9 41508437 41508587 -100762857 + L1MC4 LINE L1 6847 7003 -1039 890 197 41 9 chr9 41508630 41508848 -100762596 + L1MC4 LINE L1 7137 7361 -681 192 300 0 12 chr9 41509721 41509801 -100761643 - L2 LINE L2 -227 3045 2967 22 35 0 0 chr9 41510367 41510396 -100761048 + AT_rich Low_complexity Low_complexity 1 29 0 2319 107 0 0 chr9 41510671 41510969 -100760475 + AluSc SINE Alu 1 298 -11 23 68 0 0 chr9 41511059 41511103 -100760341 + AT_rich Low_complexity Low_complexity 1 44 0 267 288 12 0 chr9 41511136 41511216 -100760228 - L1PA16 LINE L1 -1 6165 6085 730 251 53 21 chr9 41511327 41511570 -100759874 + L1ME2 LINE L1 5811 6061 -103 1647 231 53 42 chr9 41511656 41512277 -100759167 + L1ME LINE L1 5197 5822 -340 218 185 0 77 chr9 41512625 41512690 -100758754 + L2 LINE L2 3158 3217 -96 2128 106 40 7 chr9 41512694 41512995 -100758449 - AluSq SINE Alu -1 312 2 249 324 131 25 chr9 41513323 41513567 -100757877 - L2 LINE L2 -36 3277 3008 1264 238 41 54 chr9 41513777 41514239 -100757205 + L1MDb LINE L1 822 1277 -5132 371 292 138 17 chr9 41514587 41514818 -100756626 - MER102a DNA MER1_type -1 329 71 198 0 0 0 chr9 41515704 41515726 -100755718 + (T)n Simple_repeat Simple_repeat 1 22 0 657 71 0 0 chr9 41515764 41515848 -100755596 - AluY SINE Alu -184 127 44 584 172 0 0 chr9 41515840 41515933 -100755511 - FLAM_A SINE Alu -49 93 1 * 206 293 42 54 chr9 41515946 41516077 -100755367 + MER5A DNA MER1_type 46 189 0 478 294 128 11 chr9 41517757 41517944 -100753500 + MIR SINE MIR 46 254 -8 1519 203 3 10 chr9 41517946 41518241 -100753203 - AluJo SINE Alu -19 293 1 22 70 0 0 chr9 41518246 41518289 -100753155 + AT_rich Low_complexity Low_complexity 1 43 0 2095 122 0 0 chr9 41518646 41518960 -100752484 + AluSg SINE Alu 1 310 0 1819 102 33 0 chr9 41519528 41519773 -100751671 - AluSc SINE Alu -56 253 1 1958 146 0 0 chr9 41519774 41520080 -100751364 - AluSg SINE Alu 0 306 1 485 175 319 6 chr9 41521351 41521517 -100749927 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chr9 41521591 41521613 -100749831 + AT_rich Low_complexity Low_complexity 1 22 0 1125 148 0 22 chr9 41521613 41521796 -100749648 - AluJb SINE Alu -7 305 127 306 0 0 0 chr9 41522175 41522209 -100749235 + (TA)n Simple_repeat Simple_repeat 2 35 0 1935 142 0 10 chr9 41522209 41522497 -100748947 - AluSx SINE Alu -27 285 1 953 176 113 57 chr9 41522846 41523141 -100748303 + MLT1E1 LTR MaLR 258 654 0 565 197 17 0 chr9 41523675 41523792 -100747652 + L1MB4 LINE L1 6047 6165 -15 5107 215 72 43 chr9 41523984 41525377 -100746067 + HERVL68 LTR ERVL 347 1780 -1257 1562 214 69 31 chr9 41525428 41525443 -100746001 + HERVL68 LTR ERVL 1941 1954 -1083 2341 71 14 14 chr9 41525443 41525740 -100745704 - AluY SINE Alu -14 297 1 1562 214 69 31 chr9 41525740 41526144 -100745300 + HERVL68 LTR ERVL 1954 2376 -661 778 221 69 22 chr9 41526144 41526375 -100745069 - MER31B LTR ERV1 0 466 225 289 194 16 0 chr9 41528315 41528377 -100743067 + MIR SINE MIR 111 173 -89 329 207 58 0 chr9 41528755 41528842 -100742602 - MIR SINE MIR -111 151 60 369 202 144 117 chr9 41529197 41529385 -100742059 - MER31B LTR ERV1 -244 222 30 42 0 0 0 chr9 41530253 41530295 -100741149 + AT_rich Low_complexity Low_complexity 1 42 0 535 212 42 17 chr9 41530472 41530590 -100740854 + FLAM_A SINE Alu 1 121 -21 2391 92 3 0 chr9 41533458 41533752 -100737692 - AluSp SINE Alu -16 297 3 844 199 0 161 chr9 41535591 41535852 -100735592 + MER58A DNA MER1_type 4 222 -2 587 307 136 37 chr9 41535937 41536153 -100735291 + MLT1L LTR MaLR 5 198 -417 2062 143 0 0 chr9 41536153 41536447 -100734997 + AluSc SINE Alu 1 294 -15 587 307 136 37 chr9 41536447 41536634 -100734810 + MLT1L LTR MaLR 198 448 -167 272 217 67 0 chr9 41536679 41536739 -100734705 + MLT1L LTR MaLR 546 609 -6 2860 213 121 39 chr9 41537558 41538291 -100733153 + Charlie1 DNA MER1_type 1605 2435 -326 1962 123 7 7 chr9 41538291 41538576 -100732868 + AluSx SINE Alu 1 285 -27 2860 213 121 39 chr9 41538576 41538792 -100732652 + Charlie1 DNA MER1_type 2435 2632 -129 320 226 177 0 chr9 41538793 41538917 -100732527 + L1M2 LINE L1 5296 5441 -856 1635 196 45 32 chr9 41538917 41539321 -100732123 - LTR52 LTR ERVL -3 418 10 485 263 103 5 chr9 41539328 41539522 -100731922 + L1ME LINE L1 5435 5647 -517 1081 222 13 4 chr9 41539647 41539877 -100731567 + Tigger2 DNA MER2_type 2487 2718 0 41 21 0 0 chr9 41540142 41540190 -100731254 + AT_rich Low_complexity Low_complexity 1 48 0 2313 104 0 0 chr9 41540224 41540521 -100730923 - AluSx SINE Alu -15 297 1 252 143 82 0 chr9 41541684 41541782 -100729662 + (TA)n Simple_repeat Simple_repeat 1 106 0 209 91 15 45 chr9 41541790 41541856 -100729588 + (TAAAAA)n Simple_repeat Simple_repeat 6 69 0 242 123 0 74 chr9 41541856 41541937 -100729507 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 760 116 0 9 chr9 41542065 41542177 -100729267 - AluSg/x SINE Alu -30 280 170 1578 173 75 16 chr9 41542180 41542498 -100728946 - L1MA9 LINE L1 -157 6155 5819 776 111 0 9 chr9 41542498 41542606 -100728838 + AluSg/x SINE Alu 193 299 -11 1898 149 29 16 chr9 41542631 41542939 -100728505 + AluSx SINE Alu 1 312 0 388 281 18 9 chr9 41543121 41543235 -100728209 + MIR SINE MIR 32 146 -116 1494 186 207 3 chr9 41543246 41543281 -100728163 - LTR46 LTR ERV1 0 460 433 495 0 0 0 chr9 41543281 41543336 -100728108 + (CA)n Simple_repeat Simple_repeat 2 56 0 1494 186 207 3 chr9 41543336 41543682 -100727762 - LTR46 LTR ERV1 -27 433 1 350 301 135 19 chr9 41543724 41543983 -100727461 - L2 LINE L2 -24 3289 3001 436 178 12 24 chr9 41548482 41548648 -100722796 + HSAT5 Satellite Satellite 1 164 -3 253 286 0 12 chr9 41548723 41548839 -100722605 + HSAT5 Satellite Satellite 1 114 -1 339 232 0 12 chr9 41548885 41548967 -100722477 + HSAT5 Satellite Satellite 3 83 -3 236 203 58 29 chr9 41549043 41549112 -100722332 + HSAT5 Satellite Satellite 1 71 -15 299 211 14 21 chr9 41549213 41549308 -100722136 + HSAT5 Satellite Satellite 1 94 -20 * 530 224 42 33 chr9 41549286 41549462 -100721982 - MSTA LTR MaLR -130 296 127 672 252 178 21 chr9 41549509 41549751 -100721693 + MST-int LTR MaLR 977 1256 -395 286 179 18 0 chr9 41549739 41549795 -100721649 - THE1-int LTR MaLR -613 967 911 * 2482 80 0 0 chr9 41551320 41551620 -100719824 + AluY SINE Alu 11 310 -1 201 375 0 0 chr9 41551875 41551971 -100719473 + (TG)n Simple_repeat Simple_repeat 1 96 0 1265 190 4 22 chr9 41552198 41552467 -100718977 + L1M2c LINE L1 2008 2271 -4518 320 291 0 39 chr9 41752905 41753087 -100518357 + C-rich Low_complexity Low_complexity 4 178 0 343 224 3 50 chr9 41753105 41753446 -100517998 + C-rich Low_complexity Low_complexity 1 325 0 218 206 0 79 chr9 41753869 41753932 -100517512 + (CGGGG)n Simple_repeat Simple_repeat 1 58 0 1494 34 86 26 chr9 41755716 41755950 -100515494 + LTR2B LTR ERV1 1 248 -242 229 113 0 38 chr9 41756345 41756398 -100515046 + (GGGGA)n Simple_repeat Simple_repeat 5 55 0 342 360 0 0 chr9 41756405 41756569 -100514875 + G-rich Low_complexity Low_complexity 1 164 0 1705 151 10 21 chr9 41757224 41757515 -100513929 - AluJo SINE Alu -22 290 3 24 85 0 0 chr9 41758081 41758140 -100513304 + GC_rich Low_complexity Low_complexity 1 59 0 1298 92 11 5 chr9 41761869 41762054 -100509390 - AluSp SINE Alu -127 186 1 2029 135 6 3 chr9 41762136 41762440 -100509004 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr9 41762440 41762467 -100508977 + (CAATG)n Simple_repeat Simple_repeat 2 28 0 2296 73 7 3 chr9 41763176 41763478 -100507966 - AluY SINE Alu -8 303 1 607 111 0 0 chr9 41763510 41763609 -100507835 + HERVI LTR ERV1 1611 1709 -5187 2213 92 3 3 chr9 41763609 41763914 -100507530 + AluSx SINE Alu 1 305 -7 2307 86 20 0 chr9 41763914 41764217 -100507227 + AluY SINE Alu 1 309 -2 1922 125 4 0 chr9 41764251 41764568 -100506876 + AluSx SINE Alu 9 326 0 270 235 99 0 chr9 41764638 41764719 -100506725 + HERVI LTR ERV1 4187 4275 -3510 1358 140 14 19 chr9 41764731 41764867 -100506577 + AluSq SINE Alu 1 137 -176 2541 43 0 3 chr9 41764867 41765170 -100506274 + AluY SINE Alu 1 302 -9 1358 140 14 19 chr9 41765170 41765247 -100506197 + AluSq SINE Alu 137 213 -100 692 136 9 0 chr9 41765347 41765457 -100505987 + AluSq SINE Alu 197 307 -6 180 0 0 0 chr9 41765710 41765730 -100505714 + (TG)n Simple_repeat Simple_repeat 1 20 0 8224 51 20 5 chr9 41765745 41766737 -100504707 - LTR13 LTR ERVK 0 1007 1 1907 140 0 7 chr9 41766737 41767029 -100504415 + AluSx SINE Alu 8 297 -15 296 235 52 17 chr9 41767042 41767157 -100504287 - L1 LINE L1 -1462 4684 4566 708 254 55 0 chr9 41767181 41767346 -100504098 - FRAM SINE Alu -9 167 1 2188 216 33 60 chr9 41767346 41767555 -100503889 - L1 LINE L1 -1690 4456 4243 2398 82 0 0 chr9 41767555 41767858 -100503586 - AluY SINE Alu 0 311 9 2188 216 33 60 chr9 41767858 41768366 -100503078 - L1 LINE L1 -1903 4243 3758 1995 100 10 20 chr9 41769390 41769689 -100501755 - AluSc SINE Alu -13 296 1 1662 176 3 3 chr9 41769768 41770057 -100501387 - AluJb SINE Alu -22 290 2 2260 112 0 6 chr9 41770118 41770430 -100501014 - AluSq SINE Alu -3 310 1 1076 89 0 0 chr9 41770647 41770782 -100500662 + AluSq/x SINE Alu 2 136 -177 2038 120 3 22 chr9 41770782 41771099 -100500345 + AluSx SINE Alu 1 311 -1 1880 130 31 3 chr9 41771101 41771393 -100500051 + AluSx SINE Alu 1 300 -12 229 200 20 0 chr9 41771449 41771499 -100499945 - L2 LINE L2 -2 3270 3220 3028 152 62 8 chr9 41771505 41772098 -100499346 - MER41B LTR ERV1 -7 628 4 372 234 80 7 chr9 41772220 41772357 -100499087 + REP3 LTR ERV 122 268 -294 272 248 76 19 chr9 41772384 41772489 -100498955 - L2 LINE L2 -101 3212 3102 205 284 40 47 chr9 41774909 41775057 -100496387 + (CACG)n Simple_repeat Simple_repeat 4 150 0 222 235 10 110 chr9 41775226 41775481 -100495963 + (CACG)n Simple_repeat Simple_repeat 1 229 0 206 296 0 0 chr9 41775950 41776004 -100495440 + MIR SINE MIR 111 164 -98 209 60 40 40 chr9 41780306 41780356 -100491088 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 1205 138 15 75 chr9 41780947 41780970 -100490474 - HERV17 LTR ERV1 -3347 4438 4415 2470 63 0 0 chr9 41780970 41781271 -100490173 + AluY SINE Alu 1 301 -10 1205 138 15 75 chr9 41781271 41781405 -100490039 - HERV17 LTR ERV1 -3370 4415 4301 1985 116 0 53 chr9 41781405 41781725 -100489719 - AluSx SINE Alu -9 303 1 1205 138 15 75 chr9 41781725 41781834 -100489610 - HERV17 LTR ERV1 -3484 4301 4187 1883 121 24 17 chr9 41781905 41782203 -100489241 - AluY SINE Alu -10 301 2 578 140 26 88 chr9 41782204 41782544 -100488900 - HERV17 LTR ERV1 -5760 1136 704 * 1380 186 69 9 chr9 41782531 41782865 -100488579 - HERV17 LTR ERV1 -4918 1731 1378 2300 62 17 0 chr9 41783180 41783472 -100487972 + AluY SINE Alu 2 298 -13 2160 82 21 7 chr9 41784175 41784466 -100486978 - AluY SINE Alu -16 295 1 2157 116 3 0 chr9 41784474 41784776 -100486668 - AluSx SINE Alu -9 303 1 1078 129 6 0 chr9 41785793 41785956 -100485488 + AluSc SINE Alu 146 309 0 1796 159 3 0 chr9 41786329 41786625 -100484819 - AluSx SINE Alu -15 297 1 928 142 0 0 chr9 41786625 41786759 -100484685 - AluSq/x SINE Alu -177 135 2 2086 120 0 3 chr9 41786767 41787066 -100484378 - AluSp SINE Alu -15 298 1 2441 63 0 16 chr9 41788059 41788375 -100483069 + AluY SINE Alu 1 311 0 1330 192 19 11 chr9 41788950 41789211 -100482233 - AluSx SINE Alu -49 263 1 3541 155 29 0 chr9 41789859 41790445 -100480999 - LTR26 LTR ERV1 0 603 1 305 292 133 0 chr9 41791876 41791989 -100479455 - L1MC4 LINE L1 -1332 6710 6583 6708 70 9 0 chr9 41792538 41793820 -100477624 - L1PA7 LINE L1 0 6154 4855 6812 93 2 3 chr9 41793821 41794896 -100476548 + L1PA7 LINE L1 3773 4846 -1300 12071 148 17 9 chr9 41795445 41798274 -100473170 - L1PA13 LINE L1 -2 6161 3320 220 307 132 9 chr9 41800011 41800125 -100471319 + L2 LINE L2 3180 3307 -6 798 313 50 22 chr9 41800751 41801387 -100470057 + L1M4 LINE L1 4544 5197 -949 1891 172 35 58 chr9 41801890 41802286 -100469158 + MLT1B LTR MaLR 4 390 0 304 291 86 26 chr9 41803135 41803252 -100468192 - L2 LINE L2 -1 3312 3189 1618 100 4 25 chr9 41803444 41803684 -100467760 - AluY SINE Alu -76 235 1 495 251 54 35 chr9 41803685 41803805 -100467639 + L1 LINE L1 4343 4459 -1687 2069 108 0 13 chr9 41803805 41804112 -100467332 + AluSq SINE Alu 1 303 -10 495 251 54 35 chr9 41804112 41804246 -100467198 + L1 LINE L1 4459 4679 -1467 1949 104 0 0 chr9 41804246 41804506 -100466938 - AluSx SINE Alu -51 261 2 495 251 54 35 chr9 41804506 41804541 -100466903 + L1 LINE L1 4679 4712 -1434 281 261 203 7 chr9 41804583 41804721 -100466723 + MLT1A1 LTR MaLR 128 292 -73 1979 120 10 10 chr9 41804771 41805062 -100466382 - AluSx SINE Alu -9 303 13 1554 206 0 13 chr9 41805070 41805371 -100466073 - AluJb SINE Alu -15 297 1 296 161 18 0 chr9 41805458 41805514 -100465930 + MLT1I LTR MaLR 353 409 0 2054 126 0 0 chr9 41807505 41807799 -100463645 + AluSq SINE Alu 1 294 -19 2079 100 3 32 chr9 41808610 41808920 -100462524 + AluSp SINE Alu 1 301 -12 1889 127 20 0 chr9 41809971 41810263 -100461181 + AluSx SINE Alu 1 298 -14 780 191 0 14 chr9 41810269 41810410 -100461034 + AluJb SINE Alu 3 141 -171 1923 119 17 17 chr9 41810410 41810703 -100460741 + AluSp SINE Alu 1 293 -20 1892 155 0 7 chr9 41810709 41811012 -100460432 + AluSx SINE Alu 1 301 -11 1885 136 4 0 chr9 41811014 41811317 -100460127 + AluSc SINE Alu 1 304 0 2477 61 0 6 chr9 41811366 41811677 -100459767 - AluY SINE Alu -2 309 1 220 161 43 86 chr9 41813498 41813591 -100457853 + (CTGGGG)n Simple_repeat Simple_repeat 1 89 0 1068 206 127 24 chr9 41814150 41814444 -100457000 - MER54A LTR ERVL -6 895 554 1857 128 10 14 chr9 41814444 41814734 -100456710 + AluSq SINE Alu 3 291 -22 1068 206 127 24 chr9 41814734 41814808 -100456636 - MER54A LTR ERVL -347 554 489 255 286 0 0 chr9 41817778 41817956 -100453488 + (CA)n Simple_repeat Simple_repeat 1 178 0 491 283 6 6 chr9 41817969 41818146 -100453298 + (CA)n Simple_repeat Simple_repeat 2 178 0 263 294 78 10 chr9 41818205 41818307 -100453137 - L2 LINE L2 -6 3266 3158 2253 102 0 3 chr9 41819412 41819715 -100451729 + AluSx SINE Alu 1 302 -10 2253 97 0 3 chr9 41819716 41820014 -100451430 + AluSc SINE Alu 1 297 -12 1380 133 0 0 chr9 41820017 41820213 -100451231 + AluSg/x SINE Alu 102 297 -15 650 159 68 38 chr9 41820214 41820346 -100451098 - AluJo/FRAM SINE Alu -32 280 145 1905 112 16 20 chr9 41820347 41820517 -100450927 - AluSq SINE Alu -8 305 136 2303 83 0 10 chr9 41820517 41820819 -100450625 - AluY SINE Alu -12 299 1 2346 91 0 0 chr9 41820819 41821114 -100450330 - AluSg SINE Alu -13 297 2 1905 112 16 20 chr9 41821114 41821245 -100450199 - AluSq SINE Alu -175 138 4 285 204 57 45 chr9 41821540 41821551 -100449893 + AluJb SINE Alu 125 134 -168 1628 152 13 44 chr9 41821551 41821683 -100449761 + AluJo SINE Alu 1 136 -176 1988 128 0 3 chr9 41821683 41821965 -100449479 + AluSx SINE Alu 14 294 -18 2145 105 16 3 chr9 41821965 41822269 -100449175 + AluSp SINE Alu 1 309 -4 2163 113 7 0 chr9 41822269 41822579 -100448865 + AluSp SINE Alu 1 312 -1 1628 152 13 44 chr9 41822579 41822759 -100448685 + AluJo SINE Alu 133 305 -7 285 204 57 45 chr9 41822759 41822835 -100448609 + AluJb SINE Alu 134 213 -89 469 262 33 31 chr9 41823017 41823423 -100448021 + (TGAG)n Simple_repeat Simple_repeat 1 407 0 222 279 58 41 chr9 41823513 41823685 -100447759 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 202 260 0 52 chr9 41826604 41826700 -100444744 + (CCCTG)n Simple_repeat Simple_repeat 5 95 0 366 226 0 52 chr9 41830728 41830843 -100440601 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 261 262 6 27 chr9 41833675 41833858 -100437586 + (CACG)n Simple_repeat Simple_repeat 1 179 0 319 274 4 25 chr9 41833863 41834142 -100437302 + (CA)n Simple_repeat Simple_repeat 1 272 0 410 328 11 11 chr9 41834198 41834375 -100437069 + (CA)n Simple_repeat Simple_repeat 1 177 0 363 333 11 11 chr9 41834402 41834576 -100436868 + (CA)n Simple_repeat Simple_repeat 2 175 0 190 324 14 0 chr9 41838966 41839040 -100432404 - MIR SINE MIR -132 130 56 189 0 0 0 chr9 41840086 41840107 -100431337 + (CAGCC)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr9 41841524 41841559 -100429885 + GC_rich Low_complexity Low_complexity 1 35 0 312 200 0 0 chr9 41841581 41841661 -100429783 + G-rich Low_complexity Low_complexity 3 82 0 2308 67 3 3 chr9 41842163 41842462 -100428982 + AluY SINE Alu 1 299 -12 1244 134 0 0 chr9 41842462 41842641 -100428803 + AluSq SINE Alu 134 312 -1 916 208 0 0 chr9 41842644 41842803 -100428641 + AluJo/FRAM SINE Alu 137 295 -7 255 319 104 15 chr9 41842840 41843110 -100428334 - L1MEd LINE L1 -5206 913 620 1776 144 14 7 chr9 41843309 41843601 -100427843 - AluJb SINE Alu -18 294 1 355 299 58 39 chr9 41843604 41843758 -100427686 - L1MEd LINE L1 -5949 170 14 25 0 0 0 chr9 41844273 41844298 -100427146 + GC_rich Low_complexity Low_complexity 1 25 0 202 205 26 39 chr9 41846439 41846517 -100424927 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr9 41849116 41849140 -100422304 + (CGAG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr9 41849247 41849270 -100422174 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 41849362 41849383 -100422061 + GC_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr9 41853125 41853174 -100418270 + GC_rich Low_complexity Low_complexity 1 49 0 2312 43 0 3 chr9 41856371 41856680 -100414764 - AluY SINE Alu 0 308 1 1959 109 25 0 chr9 41856834 41857109 -100414335 - AluSx SINE Alu -30 282 1 1743 161 35 0 chr9 41857111 41857396 -100414048 - AluJb SINE Alu -16 296 2 674 197 16 8 chr9 41857400 41857527 -100413917 - FLAM_C SINE Alu -5 128 1 1206 163 80 73 chr9 41858740 41859040 -100412404 - AluJo SINE Alu -10 302 1 1949 119 27 7 chr9 41859116 41859410 -100412034 + AluSg SINE Alu 1 300 -10 1559 172 26 23 chr9 41859419 41859558 -100411886 + AluSx SINE Alu 1 138 -174 2130 104 3 3 chr9 41859558 41859855 -100411589 + AluSq SINE Alu 3 299 -14 1559 172 26 23 chr9 41859855 41860023 -100411421 + AluSx SINE Alu 138 309 -3 894 78 0 8 chr9 41860115 41860243 -100411201 - FLAM_C SINE Alu -16 127 1 484 95 0 40 chr9 41860245 41860319 -100411125 - Alu SINE Alu -19 291 221 1016 115 48 0 chr9 41860319 41860506 -100410938 - LTR10A LTR ERV1 0 609 366 2403 64 20 0 chr9 41860506 41860802 -100410642 - AluY SINE Alu -9 302 1 2103 112 7 3 chr9 41860802 41861105 -100410339 - AluSx SINE Alu -8 304 1 485 101 0 0 chr9 41861105 41861184 -100410260 - Harlequin LTR ERV1 -5187 1709 1631 189 0 0 0 chr9 41861414 41861435 -100410009 + (CCG)n Simple_repeat Simple_repeat 2 22 0 219 167 42 21 chr9 41863073 41863121 -100408323 + L3 LINE CR1 612 660 -917 918 98 15 8 chr9 41864824 41864956 -100406488 + AluSp SINE Alu 1 133 -180 2151 117 3 3 chr9 41864968 41865277 -100406167 + AluY SINE Alu 1 309 -2 2287 93 3 0 chr9 41865370 41865670 -100405774 - AluY SINE Alu -10 301 1 1551 167 20 30 chr9 41865974 41866273 -100405171 - AluSx SINE Alu -16 296 1 2395 69 0 3 chr9 41866276 41866582 -100404862 - AluY SINE Alu -6 305 1 1911 122 4 0 chr9 41866622 41866900 -100404544 - AluY SINE Alu -5 306 28 1871 125 46 0 chr9 41867122 41867403 -100404041 - AluSg SINE Alu -16 294 1 787 193 12 30 chr9 41867408 41867574 -100403870 - AluJo/FRAM SINE Alu -16 296 134 1633 182 19 0 chr9 41867574 41867881 -100403563 - 7SLRNA srpRNA srpRNA -7 313 1 298 211 53 0 chr9 41868123 41868199 -100403245 + AluJ/FRAM SINE Alu 223 302 0 1885 140 20 0 chr9 41868202 41868495 -100402949 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr9 41869180 41869203 -100402241 + GC_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr9 41869702 41869761 -100401683 + GC_rich Low_complexity Low_complexity 1 59 0 340 210 0 0 chr9 41869842 41869923 -100401521 - AluSg SINE Alu 0 300 220 726 149 182 7 chr9 41869924 41870078 -100401366 - AluSg SINE Alu -124 186 6 1670 143 0 21 chr9 41870126 41870413 -100401031 + AluJb SINE Alu 15 295 -17 304 214 208 45 chr9 41870605 41870783 -100400661 - L1MC4 LINE L1 -64 7978 7772 1728 130 0 0 chr9 41870887 41871141 -100400303 - AluSx SINE Alu 0 312 59 851 85 15 31 chr9 41871158 41871288 -100400156 + AluSp/q SINE Alu 167 294 -19 1747 132 75 0 chr9 41871291 41871572 -100399872 + AluSx SINE Alu 1 302 -10 1272 148 157 0 chr9 41871576 41871812 -100399632 - AluJb SINE Alu -19 293 21 653 265 36 54 chr9 41871887 41871930 -100399514 - MER74B LTR ERVL -82 540 498 8090 55 2 0 chr9 41871930 41872897 -100398547 + LTR5 LTR ERVK 1 969 0 653 265 36 54 chr9 41872897 41873057 -100398387 - MER74B LTR ERVL -124 498 337 2204 101 0 3 chr9 41873057 41873355 -100398089 + AluSq SINE Alu 1 297 -16 2337 98 0 0 chr9 41873355 41873662 -100397782 + AluY SINE Alu 1 307 -4 653 265 36 54 chr9 41873662 41873792 -100397652 - MER74B LTR ERVL -283 339 211 264 316 99 28 chr9 41874052 41874264 -100397180 + L1M3e LINE L1 1439 1665 -5365 3827 47 42 4 chr9 41874358 41874830 -100396614 - LTR2B LTR ERV1 0 490 1 21761 119 15 7 chr9 41874830 41878343 -100393101 - Harlequin LTR ERV1 -1 6895 3352 5770 61 44 11 chr9 41878342 41878879 -100392565 - Harlequin LTR ERV1 -4322 2574 1989 * 2618 30 0 0 chr9 41878879 41879179 -100392265 + AluY SINE Alu 1 300 -11 5770 61 44 11 chr9 41879179 41879612 -100391832 - Harlequin LTR ERV1 -4907 1989 1572 * 5835 89 23 6 chr9 41879598 41880483 -100390961 - Harlequin LTR ERV1 -5996 900 1 1178 44 6 0 chr9 41880483 41880641 -100390803 - LTR2B LTR ERV1 0 490 332 522 181 0 29 chr9 41880747 41880852 -100390592 - AluSq/x SINE Alu -209 104 3 2822 214 53 50 chr9 41880854 41880975 -100390469 - L1 LINE L1 -1684 4462 4343 2385 69 10 0 chr9 41880975 41881279 -100390165 + AluY SINE Alu 1 307 -4 2822 214 53 50 chr9 41881279 41881671 -100389773 - L1 LINE L1 -1803 4343 3953 1812 113 4 0 chr9 41881671 41881928 -100389516 + AluSp SINE Alu 49 306 -7 1968 92 58 20 chr9 41881929 41882221 -100389223 + AluY SINE Alu 1 303 -8 2822 214 53 50 chr9 41882221 41882655 -100388789 - L1 LINE L1 -2192 3954 3510 292 169 31 15 chr9 41882656 41882721 -100388723 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr9 41882783 41882847 -100388597 - L1MC3 LINE L1 -225 7560 7496 1759 123 23 52 chr9 41884651 41884961 -100386483 + AluSq SINE Alu 1 301 -12 811 194 0 25 chr9 41884961 41885121 -100386323 + AluSg/x SINE Alu 140 295 -17 842 102 16 23 chr9 41885204 41885332 -100386112 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr9 41885334 41885425 -100386019 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr9 41885425 41885858 -100385586 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr9 41885858 41886069 -100385375 - AluSx SINE Alu -104 208 1 489 134 24 0 chr9 41886074 41886156 -100385288 - Alu SINE Alu 0 310 227 2137 158 140 0 chr9 41886175 41886515 -100384929 - LTR10A LTR ERV1 -62 547 119 1808 133 207 13 chr9 41886515 41886892 -100384552 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr9 41886892 41887031 -100384413 - LTR10A LTR ERV1 -490 119 1 24 47 0 47 chr9 41887580 41887644 -100383800 + GC_rich Low_complexity Low_complexity 1 61 0 208 111 67 0 chr9 41887714 41887784 -100383660 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 1844 106 41 10 chr9 41888469 41888761 -100382683 - AluSg SINE Alu -7 303 3 1865 50 50 0 chr9 41888771 41889011 -100382433 - AluY SINE Alu 0 311 60 1108 39 0 0 chr9 41889011 41889138 -100382306 - AluY SINE Alu -176 135 9 1830 152 0 0 chr9 41889146 41889436 -100382008 - AluSc SINE Alu -19 290 1 516 231 0 0 chr9 41889699 41889807 -100381637 - FLAM_A SINE Alu -15 127 20 2324 72 13 0 chr9 41889824 41890131 -100381313 - AluY SINE Alu 0 311 1 1925 130 3 7 chr9 41890142 41890442 -100381002 - AluSx SINE Alu -13 299 1 2173 86 7 0 chr9 41892158 41892450 -100378994 - AluY SINE Alu -17 294 1 1346 149 0 0 chr9 41892457 41892665 -100378779 - AluSg/x SINE Alu -20 292 85 935 167 61 5 chr9 41892668 41892866 -100378578 - AluSg/x SINE Alu -17 293 85 2077 79 18 0 chr9 41893320 41893656 -100377788 - AluSp SINE Alu 0 341 1 994 70 8 0 chr9 41893660 41893789 -100377655 - AluSp SINE Alu -183 130 1 1834 144 17 0 chr9 41893791 41894082 -100377362 - AluSx SINE Alu -16 296 1 435 309 8 6 chr9 41895037 41895459 -100375985 + (CA)n Simple_repeat Simple_repeat 1 422 0 283 300 10 3 chr9 41895490 41895810 -100375634 + (CA)n Simple_repeat Simple_repeat 1 322 0 325 314 5 32 chr9 41895831 41896016 -100375428 + (CA)n Simple_repeat Simple_repeat 1 180 0 2035 118 0 10 chr9 41896960 41897257 -100374187 - AluSg SINE Alu -16 294 1 1201 171 15 0 chr9 41898588 41898793 -100372651 + AluJb SINE Alu 85 292 -20 1428 134 36 82 chr9 41898794 41899100 -100372344 + AluSc SINE Alu 1 292 -17 1057 165 0 0 chr9 41899100 41899270 -100372174 + AluSp SINE Alu 134 303 -10 1747 122 3 91 chr9 41899272 41899592 -100371852 + AluSx SINE Alu 1 292 -20 1883 112 14 20 chr9 41899967 41900263 -100371181 - AluY SINE Alu -17 294 1 835 116 16 16 chr9 41900267 41900396 -100371048 - AluSp SINE Alu -172 141 13 2269 75 7 0 chr9 41902991 41903286 -100368158 + AluY SINE Alu 2 298 -13 1687 143 4 8 chr9 41903779 41904037 -100367407 - AluSq SINE Alu -56 257 1 965 183 106 84 chr9 41904043 41904260 -100367184 - AluJb SINE Alu -20 292 66 2099 110 0 0 chr9 41904260 41904551 -100366893 + AluSg SINE Alu 1 291 -19 965 183 106 84 chr9 41904551 41904606 -100366838 - AluJb SINE Alu -246 66 14 22 35 0 0 chr9 41904617 41904646 -100366798 + AT_rich Low_complexity Low_complexity 1 29 0 1286 121 15 5 chr9 41904646 41904844 -100366600 - AluSq SINE Alu -113 200 1 1952 132 10 0 chr9 41907030 41907319 -100364125 + AluSc SINE Alu 1 292 -17 269 196 18 0 chr9 41907534 41907590 -100363854 - MLT1I LTR MaLR 0 409 353 1647 190 0 0 chr9 41907688 41907967 -100363477 + AluJb SINE Alu 9 287 -25 1880 144 10 0 chr9 41907987 41908286 -100363158 + AluSx SINE Alu 7 308 -4 1776 132 10 46 chr9 41908290 41908435 -100363009 + AluSx SINE Alu 1 131 -181 2226 98 0 3 chr9 41908435 41908740 -100362704 + AluSg SINE Alu 1 304 -6 1776 132 10 46 chr9 41908740 41908897 -100362547 + AluSx SINE Alu 131 292 -20 849 226 76 4 chr9 41908940 41909215 -100362229 - L1 LINE L1 -1903 4243 3949 934 92 0 0 chr9 41909275 41909395 -100362049 - AluSq/x SINE Alu -192 120 1 1498 230 72 0 chr9 41909410 41909828 -100361616 - L1 LINE L1 -2191 3955 3508 252 219 16 16 chr9 41909827 41909891 -100361553 - L1MC3 LINE L1 -13 7772 7709 * 250 203 47 31 chr9 41909954 41910018 -100361426 - L1MC3 LINE L1 -225 7560 7496 1206 163 80 73 chr9 41912984 41913284 -100358160 - AluJo SINE Alu -10 302 1 1939 114 28 7 chr9 41913360 41913649 -100357795 + AluSg SINE Alu 1 295 -15 1525 179 26 23 chr9 41913659 41913798 -100357646 + AluSx SINE Alu 1 138 -174 2099 111 3 3 chr9 41913798 41914095 -100357349 + AluSq SINE Alu 3 299 -14 1525 179 26 23 chr9 41914095 41914263 -100357181 + AluSx SINE Alu 138 309 -3 918 70 0 8 chr9 41914355 41914483 -100356961 - FLAM_C SINE Alu -16 127 1 433 71 57 43 chr9 41914485 41914555 -100356889 - Alu SINE Alu -19 291 221 968 118 51 0 chr9 41914555 41914732 -100356712 - LTR10A LTR ERV1 0 609 376 2536 62 0 0 chr9 41914734 41915042 -100356402 - AluY SINE Alu -3 308 1 180 0 0 0 chr9 41915051 41915071 -100356373 + (T)n Simple_repeat Simple_repeat 1 20 0 1703 108 13 0 chr9 41915071 41915303 -100356141 - AluSg SINE Alu -75 235 1 2236 92 3 3 chr9 41915356 41915660 -100355784 - AluSx SINE Alu -8 304 1 2107 102 3 13 chr9 41915660 41915964 -100355480 - AluSx SINE Alu -11 301 1 514 91 0 109 chr9 41915964 41916037 -100355407 - Harlequin LTR ERV1 -5187 1709 1650 2292 54 3 10 chr9 41916037 41916335 -100355109 + AluY SINE Alu 1 296 -15 514 91 0 109 chr9 41916335 41916371 -100355073 - Harlequin LTR ERV1 -5246 1650 1612 321 100 0 0 chr9 41916371 41916421 -100355023 + (TA)n Simple_repeat Simple_repeat 2 51 0 726 218 39 10 chr9 41916438 41916644 -100354800 + AluY SINE Alu 1 212 -99 183 232 0 0 chr9 41917033 41917089 -100354355 + (CCCCAG)n Simple_repeat Simple_repeat 4 59 0 609 196 43 43 chr9 41918048 41918092 -100353352 - MER20 DNA MER1_type 0 219 176 1477 199 17 14 chr9 41918092 41918389 -100353055 - AluJo SINE Alu -14 298 1 609 196 43 43 chr9 41918389 41918507 -100352937 - MER20 DNA MER1_type -42 177 57 814 215 6 0 chr9 41918512 41918670 -100352774 + FRAM SINE Alu 2 160 -16 2049 104 3 10 chr9 41918807 41918922 -100352522 + AluSq SINE Alu 21 135 -178 2459 40 7 3 chr9 41918922 41919218 -100352226 + AluY SINE Alu 1 297 -14 2049 104 3 10 chr9 41919218 41919391 -100352053 + AluSq SINE Alu 135 307 -6 2092 112 3 3 chr9 41919399 41919693 -100351751 + AluSx SINE Alu 3 296 -16 347 100 0 0 chr9 41919703 41919753 -100351691 - Alu SINE Alu -252 50 1 2081 99 6 38 chr9 41919754 41920068 -100351376 - AluSx SINE Alu -8 304 1 2044 116 0 23 chr9 41920878 41921188 -100350256 - AluSc SINE Alu -6 303 1 2262 117 0 0 chr9 41921188 41921496 -100349948 - AluSx SINE Alu -4 308 1 2141 105 7 0 chr9 41921823 41922119 -100349325 - AluSx SINE Alu -14 298 1 1439 178 14 51 chr9 41925830 41925995 -100345449 - AluJo SINE Alu -10 302 151 2208 89 7 0 chr9 41925995 41926286 -100345158 - AluY SINE Alu -18 293 1 1439 178 14 51 chr9 41926286 41926413 -100345031 - AluJo SINE Alu -161 151 21 2272 76 10 0 chr9 41926584 41926873 -100344571 - AluY SINE Alu -19 292 1 2060 123 3 0 chr9 41926877 41927170 -100344274 - AluSp SINE Alu -19 294 1 1144 144 0 0 chr9 41927170 41927351 -100344093 - AluSg/x SINE Alu -7 305 125 2066 119 7 0 chr9 41927418 41927721 -100343723 - AluSc SINE Alu -4 305 1 1263 200 76 5 chr9 41929825 41930310 -100341134 - MER66-int LTR ERV1 -4677 1999 1445 292 79 16 16 chr9 41930326 41930370 -100341074 + Alu SINE Alu 1 44 -264 299 78 16 16 chr9 41930370 41930414 -100341030 + AluS SINE Alu 1 44 -259 344 47 16 16 chr9 41930414 41930458 -100340986 + AluS SINE Alu 1 44 -259 339 62 15 15 chr9 41930458 41930502 -100340942 + Alu SINE Alu 1 44 -264 279 67 0 22 chr9 41930502 41930547 -100340897 + Alu SINE Alu 1 44 -259 2136 120 0 0 chr9 41930547 41930839 -100340605 + AluSc SINE Alu 1 292 -17 1024 189 32 57 chr9 41930839 41931260 -100340184 - MER66-int LTR ERV1 -5562 1114 653 930 124 0 28 chr9 41931260 41931405 -100340039 + FLAM_C SINE Alu 1 141 -2 2130 110 0 16 chr9 41931406 41931714 -100339730 + AluSc SINE Alu 1 303 -6 457 258 24 0 chr9 41931804 41931928 -100339516 + MER66-int LTR ERV1 213 339 -6337 286 175 35 0 chr9 41932073 41932130 -100339314 - AluSp/q SINE Alu -5 298 240 1400 84 0 0 chr9 41932131 41932310 -100339134 - AluY SINE Alu -132 179 1 442 172 108 0 chr9 41932344 41932437 -100339007 - MER66B LTR ERV1 0 486 384 760 233 11 23 chr9 41932437 41932613 -100338831 - AluSq SINE Alu -3 310 137 1919 112 22 0 chr9 41932628 41932897 -100338547 - AluSx SINE Alu -37 275 1 455 293 45 20 chr9 41932924 41933122 -100338322 - MER66B LTR ERV1 -142 344 142 2040 94 43 0 chr9 41936855 41937132 -100334312 - AluSx SINE Alu -23 289 1 1369 160 98 0 chr9 41937153 41937266 -100334178 - AluJo SINE Alu -44 268 168 2493 41 3 22 chr9 41937266 41937582 -100333862 - AluY SINE Alu -1 310 1 1369 160 98 0 chr9 41937582 41937712 -100333732 - AluJo SINE Alu -144 168 1 312 61 41 0 chr9 41937712 41937761 -100333683 - AluJo SINE Alu -167 135 85 1627 111 43 0 chr9 41937836 41938070 -100333374 - AluSx SINE Alu -68 244 1 180 0 0 0 chr9 41938084 41938104 -100333340 + (CAA)n Simple_repeat Simple_repeat 2 21 0 195 290 0 43 chr9 41938354 41938423 -100333021 - L2 LINE L2 -210 3062 2997 915 76 0 0 chr9 41938585 41938703 -100332741 + AluSg/x SINE Alu 182 299 -11 1732 122 26 51 chr9 41938704 41939016 -100332428 + AluSx SINE Alu 2 305 -7 353 231 136 0 chr9 41939243 41939412 -100332032 - MER63 DNA MER1_type -45 1016 825 240 265 0 15 chr9 41939491 41939534 -100331910 - AluJb SINE Alu -123 179 136 1901 128 0 49 chr9 41939534 41939839 -100331605 - AluSx SINE Alu -22 290 1 240 265 0 15 chr9 41939839 41939863 -100331581 - AluJb SINE Alu -166 136 113 2286 88 13 0 chr9 41941178 41941486 -100329958 - AluSx SINE Alu 0 312 1 186 200 147 21 chr9 41943645 41943740 -100327704 - L2 LINE L2 -33 3239 3133 2021 121 7 0 chr9 41944178 41944467 -100326977 - AluSx SINE Alu -21 291 1 414 142 142 19 chr9 41945447 41945553 -100325891 + MER20 DNA MER1_type 53 171 -48 2113 112 7 0 chr9 41946611 41946906 -100324538 - AluSg SINE Alu -13 297 1 2352 61 3 0 chr9 41947084 41947377 -100324067 + AluY SINE Alu 1 294 -17 1620 169 35 0 chr9 41947422 41947706 -100323738 + AluJo SINE Alu 4 297 -15 2162 88 10 7 chr9 41947726 41948021 -100323423 + AluY SINE Alu 1 296 -15 2242 94 3 0 chr9 41948128 41948425 -100323019 - AluSx SINE Alu -14 298 1 1663 149 57 4 chr9 41948432 41948713 -100322731 - AluJo SINE Alu -16 296 1 1303 172 13 89 chr9 41948870 41949173 -100322271 + AluJb SINE Alu 21 300 -12 2274 90 0 0 chr9 41949173 41949474 -100321970 + AluY SINE Alu 1 301 -10 255 261 85 24 chr9 41949565 41949730 -100321714 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 417 257 45 21 chr9 41949751 41950163 -100321281 + (CTCA)n Simple_repeat Simple_repeat 1 421 0 231 286 31 56 chr9 42050642 42050803 -100220641 + L1MC4 LINE L1 6831 6987 -1055 1024 209 72 11 chr9 42050975 42051399 -100220045 + MLT1D LTR MaLR 5 501 -4 243 319 33 66 chr9 42051788 42051997 -100219447 - L2 LINE L2 -883 2431 2229 2009 137 7 3 chr9 42051997 42052289 -100219155 + AluSc SINE Alu 1 293 -16 243 319 33 66 chr9 42052289 42052320 -100219124 - L2 LINE L2 -1085 2229 2199 1196 249 39 21 chr9 42052677 42053007 -100218437 - MER4D LTR ERV1 0 903 568 1510 177 14 7 chr9 42053074 42053357 -100218087 - MER49 LTR ERV1 -638 285 1 2095 93 0 4 chr9 42053871 42054149 -100217295 - AluSg SINE Alu -33 277 1 5709 168 11 16 chr9 42054224 42055287 -100216157 - L1 LINE L1 -1579 4567 3510 439 268 70 66 chr9 42056077 42056320 -100215124 + L1MB2 LINE L1 174 417 -5896 4518 227 56 31 chr9 42056322 42057592 -100213852 + L1MB2 LINE L1 2052 3340 -3042 2210 101 7 0 chr9 42057592 42057888 -100213556 + AluY SINE Alu 1 298 -13 4518 227 56 31 chr9 42057888 42058820 -100212624 + L1MB2 LINE L1 3340 4248 -2134 308 191 26 29 chr9 42058870 42058963 -100212481 + L1MB2 LINE L1 4233 4324 -2058 * 39604 60 7 2 chr9 42058959 42065081 -100206363 + L1PA5 LINE L1 2 6154 0 4309 190 50 30 chr9 42065090 42065120 -100206324 + L1MB2 LINE L1 4312 4340 -2067 2373 55 3 35 chr9 42065120 42065430 -100206014 - AluY SINE Alu -11 300 1 4309 190 50 30 chr9 42065430 42065804 -100205640 + L1MB2 LINE L1 4340 4705 -1702 2032 127 0 10 chr9 42065804 42066123 -100205321 + AluJb SINE Alu 1 312 0 4309 190 50 30 chr9 42066123 42067754 -100203690 + L1MB2 LINE L1 4705 6389 -18 2233 66 3 35 chr9 42067768 42068086 -100203358 - AluY SINE Alu -3 308 1 446 194 21 11 chr9 42068899 42068992 -100202452 - MER20 DNA MER1_type -125 94 1 2474 55 3 3 chr9 42069248 42069558 -100201886 + AluY SINE Alu 1 310 -1 306 215 45 25 chr9 42069708 42069741 -100201703 + L1ME LINE L1 5637 5668 -454 2469 62 0 13 chr9 42069741 42070046 -100201398 + AluY SINE Alu 1 301 -10 306 215 45 25 chr9 42070046 42070144 -100201300 + L1ME LINE L1 5668 5767 -355 2570 49 0 0 chr9 42070219 42070525 -100200919 + AluY SINE Alu 1 306 -5 22 35 0 0 chr9 42071426 42071455 -100199989 + AT_rich Low_complexity Low_complexity 1 29 0 2294 88 0 14 chr9 42072029 42072324 -100199120 - AluY SINE Alu -20 291 1 23 33 0 0 chr9 42072347 42072377 -100199067 + AT_rich Low_complexity Low_complexity 1 30 0 366 325 43 11 chr9 42072789 42072977 -100198467 - L1M4 LINE L1 -1693 4453 4260 285 29 0 0 chr9 42072985 42073019 -100198425 + (CA)n Simple_repeat Simple_repeat 2 35 0 6344 61 2 24 chr9 42073019 42074411 -100197033 - L1PA7 LINE L1 -20 6134 4774 5961 195 46 31 chr9 42074496 42076653 -100194791 - L1MB5 LINE L1 -6 7587 5378 2042 121 0 36 chr9 42076653 42076959 -100194485 - AluSg SINE Alu -15 295 1 5961 195 46 31 chr9 42076959 42077366 -100194078 - L1MB5 LINE L1 -2215 5378 4979 3927 92 21 9 chr9 42077372 42077945 -100193499 - L1PB2 LINE L1 -2 6149 5570 2394 80 0 6 chr9 42077945 42078258 -100193186 + AluY SINE Alu 1 311 0 6380 170 9 17 chr9 42078299 42079521 -100191923 - L1PB2 LINE L1 -565 5586 4384 2197 135 0 3 chr9 42079521 42079833 -100191611 - AluSx SINE Alu -1 311 1 6380 170 9 17 chr9 42079833 42080286 -100191158 - L1PB2 LINE L1 -1767 4384 3929 6076 204 19 13 chr9 42080287 42081791 -100189653 + L1PB2 LINE L1 2398 3910 -2236 788 225 22 18 chr9 42081787 42082014 -100189430 - L1MB5 LINE L1 -2568 4997 4770 * 2458 80 0 0 chr9 42082014 42082313 -100189131 - AluSx SINE Alu -13 299 1 1237 216 69 28 chr9 42082315 42082623 -100188821 - L1MB5 LINE L1 -3153 4412 4081 2408 55 0 19 chr9 42082623 42082931 -100188513 - AluY SINE Alu -9 302 1 1237 216 69 28 chr9 42082931 42083044 -100188400 - L1MB5 LINE L1 -3484 4081 3974 975 187 25 46 chr9 42083046 42083380 -100188064 - MSTB1 LTR MaLR 0 432 10 508 275 5 5 chr9 42083410 42083603 -100187841 - L1MB5 LINE L1 -3588 3977 3785 * 1875 255 79 26 chr9 42083595 42084414 -100187030 - L1MB5 LINE L1 -4138 3427 2565 642 274 15 75 chr9 42084420 42084832 -100186612 - L1MB5 LINE L1 -5930 1559 1173 651 150 176 13 chr9 42084864 42085017 -100186427 - L1MB5 LINE L1 -6846 643 466 261 308 131 0 chr9 42085912 42086042 -100185402 - MIR3 SINE MIR -6 202 56 316 342 83 22 chr9 42087015 42087243 -100184201 + L2 LINE L2 154 395 -2919 327 85 0 0 chr9 42087398 42087445 -100183999 + (CA)n Simple_repeat Simple_repeat 2 48 0 2502 65 0 7 chr9 42087484 42087793 -100183651 + AluY SINE Alu 1 307 -4 2901 183 8 29 chr9 42087803 42088389 -100183055 - ERVL LTR ERVL -377 5387 4814 1663 188 65 31 chr9 42088476 42088891 -100182553 - MLT2B1 LTR ERVL -91 429 1 624 237 87 97 chr9 42089240 42089279 -100182165 - MLT1I LTR MaLR -38 371 333 2406 96 3 0 chr9 42089279 42089581 -100181863 + AluSg SINE Alu 1 303 -7 624 237 87 97 chr9 42089581 42089862 -100181582 - MLT1I LTR MaLR -76 333 54 2105 79 52 24 chr9 42089890 42090181 -100181263 - AluY SINE Alu -12 299 1 2615 55 0 0 chr9 42090481 42090791 -100180653 - AluY SINE Alu -1 310 1 884 279 96 18 chr9 42091138 42091536 -100179908 + MLT1E2 LTR MaLR 140 568 -58 2406 60 3 13 chr9 42092546 42092847 -100178597 - AluY SINE Alu -13 298 1 202 261 0 0 chr9 42092871 42092917 -100178527 - L3 LINE CR1 -106 1471 1426 2088 115 37 0 chr9 42093001 42093178 -100178266 - AluSc SINE Alu 0 309 115 234 0 0 0 chr9 42093178 42093204 -100178240 + (TG)n Simple_repeat Simple_repeat 2 27 0 2088 115 37 0 chr9 42093204 42093322 -100178122 - AluSc SINE Alu -194 115 3 24 0 0 0 chr9 42093718 42093742 -100177702 + AT_rich Low_complexity Low_complexity 1 24 0 3247 172 5 4 chr9 42093939 42094492 -100176952 + MER41D LTR ERV1 2 555 -2 2292 117 0 0 chr9 42094858 42095300 -100176144 - AluSc SINE Alu 0 442 1 3090 156 27 9 chr9 42095551 42096115 -100175329 - LTR69 LTR ERVL -7 581 8 242 277 12 0 chr9 42096236 42096319 -100175125 - HAL1 LINE L1 -393 2114 2031 240 281 48 68 chr9 42096372 42096518 -100174926 - LTR16C LTR ERVL -2 489 347 1744 105 4 0 chr9 42096520 42096748 -100174696 + AluSc SINE Alu 67 295 -14 365 278 83 33 chr9 42097184 42097364 -100174080 - HAL1 LINE L1 -2311 196 8 2522 49 0 3 chr9 42097670 42097976 -100173468 + AluY SINE Alu 1 305 -6 600 115 98 0 chr9 42098018 42098140 -100173304 - L1PB3 LINE L1 -145 6009 5876 495 259 24 0 chr9 42098140 42098306 -100173138 - L1M4 LINE L1 -1755 4391 4222 3421 205 57 33 chr9 42098470 42098988 -100172456 - L1MB7 LINE L1 0 6184 5680 2260 90 7 3 chr9 42098988 42099278 -100172166 - AluSg SINE Alu -19 291 1 3421 205 57 33 chr9 42099278 42100365 -100171079 - L1MB7 LINE L1 -504 5680 4534 887 104 0 24 chr9 42100365 42100515 -100170929 + AluSp/q SINE Alu 174 320 0 526 169 29 0 chr9 42100531 42100667 -100170777 - L1MB7 LINE L1 -1632 4514 4375 23 0 0 0 chr9 42100668 42100691 -100170753 + AT_rich Low_complexity Low_complexity 1 23 0 363 279 0 8 chr9 42100826 42100955 -100170489 - L1MB7 LINE L1 -1872 4274 4147 308 291 130 11 chr9 42101072 42101525 -100169919 - L1MB7 LINE L1 -3218 2928 2422 377 342 88 11 chr9 42101526 42101789 -100169655 - L1MEc LINE L1 -3947 2449 2167 27 29 0 0 chr9 42101845 42101879 -100169565 + AT_rich Low_complexity Low_complexity 1 34 0 1054 206 23 68 chr9 42101949 42102259 -100169185 - MLT2B1 LTR ERVL -118 296 1 3670 187 19 54 chr9 42102434 42102568 -100168876 - L1MB4 LINE L1 0 6416 6279 414 0 0 0 chr9 42102568 42102614 -100168830 + (TA)n Simple_repeat Simple_repeat 2 47 0 2184 72 4 4 chr9 42102619 42102897 -100168547 - AluY SINE Alu -33 278 1 3670 187 19 54 chr9 42102897 42103681 -100167763 - L1MB4 LINE L1 -141 6275 5525 1985 146 128 13 chr9 42103681 42104065 -100167379 - MSTA LTR MaLR 0 428 1 3670 187 19 54 chr9 42104065 42104096 -100167348 - L1MB4 LINE L1 -891 5525 5494 231 136 23 0 chr9 42104134 42104178 -100167266 - L1MB4 LINE L1 -865 5517 5473 * 2059 151 31 26 chr9 42104164 42104450 -100166994 - L1MB4 LINE L1 -5991 393 103 2129 93 3 10 chr9 42104450 42104750 -100166694 + AluY SINE Alu 1 298 -13 2059 151 31 26 chr9 42104750 42104854 -100166590 - L1MB4 LINE L1 -6281 103 1 1696 222 50 10 chr9 42104899 42105493 -100165951 - L1MEc LINE L1 -2702 3513 2896 362 214 0 48 chr9 42105494 42105620 -100165824 - Charlie5 DNA MER1_type -77 2535 2416 3696 162 18 34 chr9 42105632 42106420 -100165024 + LTR1 LTR ERV1 11 785 0 1375 220 13 16 chr9 42106483 42106865 -100164579 - L1MEc LINE L1 -3314 2901 2521 340 304 66 33 chr9 42106898 42107079 -100164365 - L1MEc LINE L1 -4580 1816 1630 496 252 248 0 chr9 42107123 42107369 -100164075 - L1MD2 LINE L1 -10 6349 6043 300 259 129 17 chr9 42107392 42107508 -100163936 - L1MD1 LINE L1 -170 6072 5944 1849 162 45 38 chr9 42107541 42107881 -100163563 - L1MDa LINE L1 -3982 2558 2222 2136 79 18 4 chr9 42107881 42108183 -100163261 + AluY SINE Alu 1 306 0 1849 162 45 38 chr9 42108183 42108427 -100163017 - L1MDa LINE L1 -4318 2222 1846 2448 60 17 0 chr9 42109162 42109461 -100161983 + AluSp SINE Alu 1 304 -9 2569 56 0 3 chr9 42110014 42110318 -100161126 + AluY SINE Alu 1 303 -8 227 340 46 56 chr9 42110422 42110619 -100160825 + L3 LINE CR1 1381 1575 -2 2423 96 3 0 chr9 42111181 42111493 -100159951 - AluSq SINE Alu 0 313 1 387 229 34 42 chr9 42111851 42111969 -100159475 - MER20 DNA MER1_type -4 215 99 2228 79 14 3 chr9 42112099 42112391 -100159053 + AluSc SINE Alu 1 295 -14 1983 185 117 76 chr9 42112768 42113266 -100158178 - MLT2B1 LTR ERVL 0 520 3 2425 78 0 0 chr9 42113429 42113735 -100157709 + AluY SINE Alu 1 306 -5 3024 231 42 1 chr9 42113736 42114456 -100156988 + L1M3 LINE L1 3349 4097 -2049 28 29 0 0 chr9 42114457 42114492 -100156952 + AT_rich Low_complexity Low_complexity 1 35 0 1488 97 97 0 chr9 42114497 42114734 -100156710 - L1MA8 LINE L1 0 6291 6032 3759 139 20 98 chr9 42114736 42114931 -100156513 + L1MA9 LINE L1 5137 5346 -966 2295 63 21 0 chr9 42114931 42115215 -100156229 + AluY SINE Alu 1 290 -21 3759 139 20 98 chr9 42115215 42115978 -100155466 + L1MA9 LINE L1 5346 6019 -293 346 109 0 0 chr9 42115981 42116027 -100155417 + L1M3 LINE L1 4088 4133 -2013 2662 188 34 3 chr9 42116028 42116798 -100154646 + L1M3 LINE L1 5001 5803 -368 247 283 182 75 chr9 42117147 42117306 -100154138 + MER5A DNA MER1_type 3 178 0 1678 183 0 33 chr9 42117567 42117873 -100153571 - AluJb SINE Alu -16 296 1 1850 102 4 23 chr9 42118389 42118645 -100152799 - AluSq SINE Alu -62 251 1 1849 189 132 12 chr9 42119840 42120257 -100151187 - MLT1C LTR MaLR 0 467 1 323 177 94 1 chr9 42120295 42120382 -100151062 - L1MB2 LINE L1 -1 6170 6088 1321 225 112 66 chr9 42120624 42121081 -100150363 + MLT2F LTR ERVL 186 663 0 806 194 0 0 chr9 42121140 42121264 -100150180 + FLAM_C SINE Alu 2 125 -18 3224 232 68 27 chr9 42121270 42122489 -100148955 + L1MEc LINE L1 2037 3268 -2947 2208 115 3 0 chr9 42123297 42123592 -100147852 + AluSx SINE Alu 1 296 -16 288 313 62 51 chr9 42123804 42123918 -100147526 - MER5B DNA MER1_type 0 178 60 2066 123 3 0 chr9 42123918 42124210 -100147234 - AluSx SINE Alu -19 293 1 288 313 62 51 chr9 42124210 42124271 -100147173 - MER5B DNA MER1_type -118 60 1 228 191 79 63 chr9 42124641 42124704 -100146740 - LTR33A LTR ERVL 0 523 460 2349 68 0 0 chr9 42126184 42126495 -100144949 + AluY SINE Alu 1 311 0 650 296 17 6 chr9 42127455 42127634 -100143810 + MLT1J LTR MaLR 10 190 -321 13447 186 18 10 chr9 42127643 42130110 -100141334 + L1PA13 LINE L1 1 2500 -4297 1022 274 98 75 chr9 42130327 42131003 -100140441 - MER21B LTR ERV1 -149 714 24 3553 236 69 32 chr9 42131238 42132118 -100139326 - MER21B-int LTR ERV1 -42 4149 3159 2138 108 0 14 chr9 42132118 42132297 -100139147 - AluSp SINE Alu 0 312 137 2348 79 0 10 chr9 42132297 42132602 -100138842 - AluY SINE Alu -9 302 1 2138 108 0 14 chr9 42132602 42132738 -100138706 - AluSp SINE Alu -175 137 1 3553 236 69 32 chr9 42132738 42133233 -100138211 - MER21B-int LTR ERV1 -1032 3159 2684 2049 208 50 15 chr9 42133357 42133677 -100137767 - L1MB5 LINE L1 -6 6168 5821 1870 154 0 13 chr9 42133677 42134007 -100137437 - AluSx SINE Alu 0 312 1 2049 208 50 15 chr9 42134007 42134152 -100137292 - L1MB5 LINE L1 -353 5821 5683 2101 142 0 3 chr9 42134257 42134566 -100136878 + AluSx SINE Alu 1 308 -4 617 288 71 4 chr9 42135101 42135327 -100136117 - MIR SINE MIR -10 252 12 24 0 0 0 chr9 42135879 42135903 -100135541 + AT_rich Low_complexity Low_complexity 1 24 0 371 288 124 13 chr9 42136199 42136352 -100135092 - MIR SINE MIR -36 226 57 195 219 0 0 chr9 42136567 42136599 -100134845 - L2 LINE L2 -86 3186 3155 325 300 17 17 chr9 42136879 42136999 -100134445 + MIR SINE MIR 38 157 -105 237 269 86 11 chr9 42137117 42137210 -100134234 + MIR3 SINE MIR 81 165 -43 2250 134 50 31 chr9 42137506 42137863 -100133581 + THE1B LTR MaLR 1 364 0 206 100 0 0 chr9 42138221 42138251 -100133193 + (TG)n Simple_repeat Simple_repeat 1 30 0 2488 53 0 3 chr9 42138857 42139159 -100132285 - AluY SINE Alu -10 301 1 241 222 122 61 chr9 42139897 42140029 -100131415 - L1ME LINE L1 -5901 169 30 2521 67 0 6 chr9 42140213 42140555 -100130889 + AluY SINE Alu 1 340 0 2482 56 3 13 chr9 42140686 42140990 -100130454 + AluY SINE Alu 2 302 -9 22 35 0 0 chr9 42142178 42142207 -100129237 + AT_rich Low_complexity Low_complexity 1 29 0 1508 124 5 0 chr9 42143811 42144029 -100127415 + AluSg/x SINE Alu 89 307 -5 1564 209 6 21 chr9 42144039 42144370 -100127074 + L1PB4 LINE L1 5831 6156 0 1821 203 74 37 chr9 42145296 42145783 -100125661 + MLT1D LTR MaLR 1 505 0 279 0 0 0 chr9 42146730 42146761 -100124683 + (TG)n Simple_repeat Simple_repeat 1 31 0 357 322 8 17 chr9 42146816 42146934 -100124510 + L2 LINE L2 2906 3022 -291 1907 198 107 9 chr9 42146969 42147000 -100124444 - MLT2B2 LTR ERVL -11 504 477 291 54 0 0 chr9 42147000 42147037 -100124407 + (TG)n Simple_repeat Simple_repeat 2 38 0 1907 198 107 9 chr9 42147037 42147455 -100123989 - MLT2B2 LTR ERVL -38 477 11 455 281 48 0 chr9 42147471 42147617 -100123827 + L2 LINE L2 3161 3313 0 306 75 0 0 chr9 42147620 42147660 -100123784 - L1P LINE L1 -4370 1776 1737 3488 19 0 0 chr9 42147661 42148037 -100123407 + L1PA2 LINE L1 5780 6155 0 2142 85 0 0 chr9 42148064 42148335 -100123109 - AluY SINE Alu -3 308 38 1435 183 32 61 chr9 42148636 42148948 -100122496 + MLT2B1 LTR ERVL 1 303 -217 2267 96 0 3 chr9 42149394 42149686 -100121758 - AluSc SINE Alu -18 291 1 23 0 0 0 chr9 42149824 42149847 -100121597 + AT_rich Low_complexity Low_complexity 1 23 0 2117 66 0 0 chr9 42150124 42150418 -100121026 - AluY SINE Alu 0 321 28 835 256 41 54 chr9 42150937 42151389 -100120055 + MLT1C LTR MaLR 2 466 -1 191 139 28 0 chr9 42151390 42151426 -100120018 - L2 LINE L2 -31 3241 3205 274 308 30 30 chr9 42151515 42151648 -100119796 - L2 LINE L2 -4 3309 3177 2230 115 0 0 chr9 42152109 42152405 -100119039 + AluSq SINE Alu 1 296 -17 342 205 248 31 chr9 42153945 42154106 -100117338 + L2 LINE L2 3118 3313 0 2728 19 0 19 chr9 42154338 42154654 -100116790 - AluYa5 SINE Alu -1 310 1 317 285 165 45 chr9 42155616 42155816 -100115628 - MIR SINE MIR -19 243 20 726 320 62 49 chr9 42156076 42156464 -100114980 + L1M3d LINE L1 413 805 -5498 198 0 0 0 chr9 42156632 42156654 -100114790 + (T)n Simple_repeat Simple_repeat 1 22 0 4169 229 103 33 chr9 42156899 42157217 -100114227 + L1M3d LINE L1 773 1067 -5315 2225 125 0 22 chr9 42157217 42157537 -100113907 + AluSq SINE Alu 1 313 0 2344 100 0 3 chr9 42157539 42157849 -100113595 + AluY SINE Alu 1 309 -2 4169 229 103 33 chr9 42157849 42159785 -100111659 + L1M3d LINE L1 1067 3123 -3259 2381 73 3 0 chr9 42159785 42160074 -100111370 - AluY SINE Alu -21 290 1 4169 229 103 33 chr9 42160074 42160301 -100111143 + L1M3d LINE L1 3123 3333 -3049 1149 84 0 7 chr9 42160304 42160447 -100110997 + AluY SINE Alu 1 142 -169 799 191 7 0 chr9 42161913 42162065 -100109379 + L1M3d LINE L1 4380 4532 -1850 363 181 0 0 chr9 42162065 42162136 -100109308 + L1MA5A LINE L1 6226 6297 0 25 31 0 0 chr9 42162209 42162241 -100109203 + AT_rich Low_complexity Low_complexity 1 32 0 2387 67 0 7 chr9 42162270 42162567 -100108877 + AluY SINE Alu 1 295 -16 216 0 0 0 chr9 42162984 42163008 -100108436 + (TG)n Simple_repeat Simple_repeat 1 24 0 430 278 43 19 chr9 42163184 42163393 -100108051 - L1ME4a LINE L1 -178 5943 5730 2122 107 24 0 chr9 42163980 42164271 -100107173 - AluSq SINE Alu -15 298 1 202 322 209 11 chr9 42164286 42164463 -100106981 + MIR SINE MIR 51 262 0 211 245 0 0 chr9 42164612 42164661 -100106783 - L2 LINE L2 -1 3312 3264 741 180 64 0 chr9 42164784 42164956 -100106488 + L1MA7 LINE L1 6107 6289 -2 312 183 19 67 chr9 42165480 42165584 -100105860 - LTR41 LTR ERVL -13 760 662 431 207 76 83 chr9 42166291 42166436 -100105008 - MLT1H LTR MaLR -2 547 404 1429 221 45 40 chr9 42167207 42167606 -100103838 + MLT1C LTR MaLR 59 459 -8 479 243 132 21 chr9 42168196 42168431 -100103013 + MLT1C LTR MaLR 4 264 -203 1340 133 9 14 chr9 42170034 42170252 -100101192 + L1PB3 LINE L1 5933 6149 -5 2141 171 16 5 chr9 42170670 42171056 -100100388 + MLT1B LTR MaLR 1 390 0 2415 100 0 0 chr9 42171080 42171391 -100100053 + AluY SINE Alu 1 311 0 1179 164 0 0 chr9 42171391 42171574 -100099870 + AluSg/x SINE Alu 130 312 0 3543 60 44 6 chr9 42171858 42172337 -100099107 - L1PA8 LINE L1 -1 6171 5675 1341 226 43 3 chr9 42172337 42172638 -100098806 + MER65C LTR ERV1 37 349 -112 1008 146 20 0 chr9 42172642 42172793 -100098651 - LTR12 LTR ERV1 -232 482 329 * 6268 141 1 9 chr9 42172790 42173823 -100097621 - HERV9 LTR ERV1 -7235 1164 55 557 129 16 132 chr9 42173806 42173937 -100097507 - pTR5 LTR ERV1 -130 584 337 * 2394 84 3 31 chr9 42173937 42174257 -100097187 - AluY SINE Alu 0 311 1 557 129 16 132 chr9 42174257 42174282 -100097162 - pTR5 LTR ERV1 -377 337 311 317 304 16 0 chr9 42174283 42174408 -100097036 - LTR30 LTR ERV1 -79 643 517 1215 118 5 62 chr9 42174408 42174619 -100096825 - LTR12 LTR ERV1 -463 251 53 238 250 0 0 chr9 42174619 42174671 -100096773 - LTR30 LTR ERV1 -670 52 1 440 236 0 0 chr9 42174671 42174760 -100096684 + LTR51 LTR ERV1 583 671 0 242 252 32 81 chr9 42176069 42176192 -100095252 + MIR SINE MIR 141 257 -5 385 264 104 0 chr9 42176429 42176554 -100094890 - MIR SINE MIR -35 227 90 2462 173 58 0 chr9 42179315 42179742 -100091702 + MER70A LTR ERVL 1 452 -20 21 71 0 0 chr9 42180214 42180256 -100091188 + AT_rich Low_complexity Low_complexity 1 42 0 2198 129 0 0 chr9 42180256 42180559 -100090885 - AluSq SINE Alu -10 303 1 2552 47 3 0 chr9 42181328 42181629 -100089815 + AluY SINE Alu 1 302 -9 2183 92 0 33 chr9 42181904 42182210 -100089234 + AluSx SINE Alu 1 296 -16 224 241 0 0 chr9 42182748 42182802 -100088642 + (TA)n Simple_repeat Simple_repeat 1 54 0 793 135 16 0 chr9 42283297 42283423 -99988021 - FLAM_C SINE Alu 0 143 16 1931 133 20 0 chr9 42283454 42283748 -99987696 - AluSx SINE Alu -12 300 1 2651 23 0 0 chr9 42283996 42284299 -99987145 + AluY SINE Alu 3 305 -6 869 166 0 6 chr9 42284391 42284554 -99986890 - AluSc SINE Alu -15 294 133 22 35 0 0 chr9 42285265 42285294 -99986150 + GC_rich Low_complexity Low_complexity 1 29 0 2088 99 7 0 chr9 42286218 42286501 -99984943 - AluSg SINE Alu -21 289 5 1997 115 3 10 chr9 42286709 42287013 -99984431 - AluSx SINE Alu -9 303 2 811 167 100 0 chr9 42287014 42287164 -99984280 - FRAM SINE Alu -1 165 1 2145 98 0 0 chr9 42288774 42289069 -99982375 - AluSg1 SINE Alu -14 295 1 2230 98 0 3 chr9 42289392 42289697 -99981747 - AluY SINE Alu -7 304 1 1966 97 15 0 chr9 42289697 42289966 -99981478 - AluSq SINE Alu -17 296 24 2131 95 0 48 chr9 42290073 42290220 -99981224 + AluSx SINE Alu 1 127 -185 2423 57 0 3 chr9 42290220 42290520 -99980924 + AluY SINE Alu 1 299 -12 2131 95 0 48 chr9 42290520 42290688 -99980756 + AluSx SINE Alu 127 301 -11 2392 71 0 3 chr9 42290688 42290996 -99980448 + AluY SINE Alu 1 307 -4 1824 153 27 0 chr9 42291196 42291491 -99979953 + AluSx SINE Alu 2 304 -8 185 333 40 20 chr9 42291535 42291634 -99979810 + MIR SINE MIR 37 137 -71 330 342 18 0 chr9 42291642 42291753 -99979691 - L1MC4 LINE L1 -100 7942 7830 1208 169 138 4 chr9 42291784 42292045 -99979399 + AluJo SINE Alu 1 296 -16 2156 97 3 26 chr9 42292045 42292352 -99979092 + AluSp SINE Alu 1 301 -12 1662 164 33 13 chr9 42292519 42292818 -99978626 - AluJb SINE Alu -7 305 1 1929 116 46 0 chr9 42292905 42293189 -99978255 + AluSx SINE Alu 1 297 -15 2106 101 14 0 chr9 42293207 42293493 -99977951 + AluSc SINE Alu 7 296 -13 818 154 0 29 chr9 42293662 42293798 -99977646 + FRAM SINE Alu 19 150 -26 1723 170 13 3 chr9 42293809 42294143 -99977301 + AluJb SINE Alu 1 312 0 5133 111 26 51 chr9 42294143 42294227 -99977217 + L1MA4A LINE L1 5361 5446 -857 1946 104 7 37 chr9 42294227 42294365 -99977079 + AluSx SINE Alu 6 147 -165 2287 75 3 0 chr9 42294365 42294660 -99976784 + AluY SINE Alu 1 296 -15 1946 104 7 37 chr9 42294660 42294819 -99976625 + AluSx SINE Alu 147 294 -18 5133 111 26 51 chr9 42294819 42294919 -99976525 + L1MA4A LINE L1 5446 5547 -756 2303 100 3 0 chr9 42294919 42295228 -99976216 + AluSp SINE Alu 1 310 -3 5133 111 26 51 chr9 42295228 42295329 -99976115 + L1MA4A LINE L1 5547 5649 -654 1947 143 3 0 chr9 42295329 42295629 -99975815 + AluSq SINE Alu 1 301 -12 5133 111 26 51 chr9 42295629 42296298 -99975146 + L1MA4A LINE L1 5649 6293 -10 2150 122 0 0 chr9 42296300 42296611 -99974833 - AluSx SINE Alu -1 311 1 1826 166 3 0 chr9 42296614 42296910 -99974534 - AluSx SINE Alu -15 297 1 24 32 0 0 chr9 42296910 42296941 -99974503 + AT_rich Low_complexity Low_complexity 1 31 0 35 41 0 0 chr9 42297040 42297089 -99974355 + AT_rich Low_complexity Low_complexity 1 49 0 2061 57 4 4 chr9 42297668 42297931 -99973513 + AluSp SINE Alu 1 263 -50 494 113 0 0 chr9 42297931 42298002 -99973442 + AluSp/q SINE Alu 229 299 -14 1661 142 45 3 chr9 42298003 42298292 -99973152 + AluJo SINE Alu 1 301 -11 324 107 36 0 chr9 42300050 42300152 -99971292 + Alu SINE Alu 226 329 0 342 273 55 9 chr9 42300169 42300279 -99971165 - MIR SINE MIR -40 222 108 249 33 0 0 chr9 42301171 42301201 -99970243 + (A)n Simple_repeat Simple_repeat 1 30 0 423 100 17 0 chr9 42301450 42301510 -99969934 + AluJo SINE Alu 39 99 -213 1077 155 0 84 chr9 42301555 42301742 -99969702 + AluJo SINE Alu 99 265 -47 2174 113 3 0 chr9 42301742 42302044 -99969400 - AluSx SINE Alu -9 303 1 1077 155 0 84 chr9 42302044 42302082 -99969362 + AluJo SINE Alu 265 305 -7 1981 135 10 0 chr9 42302085 42302382 -99969062 + AluSx SINE Alu 6 305 -7 336 295 173 0 chr9 42302413 42302552 -99968892 + MIR SINE MIR 94 256 -6 180 219 0 0 chr9 42302523 42302564 -99968880 + L2 LINE L2 3273 3313 0 * 267 330 11 0 chr9 42302640 42302731 -99968713 - MIR SINE MIR -68 140 49 865 225 0 0 chr9 42302879 42303057 -99968387 - AluJb SINE Alu -6 306 129 1998 133 10 3 chr9 42303076 42303376 -99968068 + AluJb SINE Alu 2 303 -9 191 380 16 16 chr9 42303387 42303508 -99967936 - L2 LINE L2 -7 3306 3186 * 207 235 88 15 chr9 42303477 42303545 -99967899 - L2 LINE L2 0 3272 3200 185 284 170 50 chr9 42303590 42303731 -99967713 - L2 LINE L2 -172 3100 2943 2110 82 0 7 chr9 42303763 42304042 -99967402 + AluSx SINE Alu 35 311 -1 281 370 69 14 chr9 42304050 42304339 -99967105 - L2 LINE L2 -456 2858 2554 310 321 71 63 chr9 42304672 42305148 -99966296 - L2 LINE L2 -7 3306 2827 1607 185 28 0 chr9 42305234 42305520 -99965924 - AluJb SINE Alu -18 294 1 473 189 24 39 chr9 42305563 42305690 -99965754 - L1MB3 LINE L1 0 6183 6059 2131 110 0 10 chr9 42305691 42305991 -99965453 - AluSg SINE Alu -13 297 1 877 135 15 0 chr9 42306018 42306151 -99965293 - FRAM SINE Alu -22 154 20 2130 125 0 0 chr9 42306360 42306657 -99964787 - AluSg SINE Alu -13 297 1 334 330 19 9 chr9 42306661 42306767 -99964677 - MIR3 SINE MIR -101 107 1 2049 123 0 10 chr9 42307016 42307337 -99964107 - AluSq SINE Alu 0 313 1 1696 138 8 0 chr9 42307337 42307605 -99963839 - AluSx SINE Alu -8 304 35 433 154 0 0 chr9 42307726 42307791 -99963653 + AluSp/q SINE Alu 223 287 -26 2224 82 0 3 chr9 42307803 42308094 -99963350 + AluSq SINE Alu 1 290 -23 256 172 31 31 chr9 42308110 42308174 -99963270 + A-rich Low_complexity Low_complexity 1 64 0 2362 77 0 0 chr9 42308182 42308482 -99962962 + AluSc SINE Alu 2 301 -8 2233 105 0 3 chr9 42308792 42309098 -99962346 - AluSx SINE Alu -7 305 1 2322 78 3 3 chr9 42309933 42310242 -99961202 - AluSc SINE Alu 0 309 1 1505 131 113 22 chr9 42310243 42310517 -99960927 - AluSx SINE Alu -13 299 1 641 193 8 0 chr9 42310686 42310805 -99960639 - FLAM_A SINE Alu -4 138 19 1581 197 151 28 chr9 42310890 42311094 -99960350 + LTR2B LTR ERV1 7 185 -305 186 43 0 0 chr9 42311094 42311117 -99960327 + (TCCTG)n Simple_repeat Simple_repeat 2 24 0 1581 197 151 28 chr9 42311117 42311343 -99960101 + LTR2B LTR ERV1 185 490 0 2057 110 7 10 chr9 42311734 42312042 -99959402 - AluSx SINE Alu 0 312 6 1252 157 20 142 chr9 42313387 42313559 -99957885 - AluJo SINE Alu 0 302 191 1605 149 4 15 chr9 42313559 42313718 -99957726 - AluSq SINE Alu -20 293 137 2289 66 0 13 chr9 42313718 42314020 -99957424 - AluY SINE Alu -13 298 1 1605 149 4 15 chr9 42314020 42314122 -99957322 - AluSq SINE Alu -176 137 35 1252 157 20 142 chr9 42314122 42314293 -99957151 - AluJo SINE Alu -111 191 1 22 35 0 0 chr9 42316004 42316033 -99955411 + AT_rich Low_complexity Low_complexity 1 29 0 1508 179 7 14 chr9 42316069 42316378 -99955066 - AluJb SINE Alu 0 307 1 1003 122 0 0 chr9 42316403 42316542 -99954902 - AluSq SINE Alu -29 284 146 437 274 58 59 chr9 42316591 42316958 -99954486 + Charlie8 DNA MER1_type 33 381 -2036 226 328 0 0 chr9 42316964 42317031 -99954413 + Charlie8 DNA MER1_type 1345 1411 -1006 284 267 0 0 chr9 42317451 42317511 -99953933 - MIR SINE MIR -122 140 81 2264 116 0 0 chr9 42318293 42318603 -99952841 - AluSx SINE Alu -2 310 1 995 98 0 0 chr9 42318605 42318738 -99952706 - AluSq/x SINE Alu -179 133 1 2375 82 0 9 chr9 42319071 42319387 -99952057 - AluSq SINE Alu 0 313 1 2148 106 0 0 chr9 42319642 42319925 -99951519 + AluSq SINE Alu 1 283 -30 2344 75 0 13 chr9 42319926 42320234 -99951210 + AluY SINE Alu 1 304 -7 23 0 0 0 chr9 42320249 42320272 -99951172 + AT_rich Low_complexity Low_complexity 1 23 0 940 192 30 30 chr9 42320448 42320677 -99950767 - AluJo SINE Alu 0 310 82 686 182 50 0 chr9 42320695 42320816 -99950628 - FLAM_C SINE Alu -5 128 2 851 207 12 12 chr9 42320841 42320967 -99950477 + AluJb SINE Alu 2 130 -182 2276 101 0 3 chr9 42320967 42321275 -99950169 + AluSc SINE Alu 1 307 -2 851 207 12 12 chr9 42321275 42321317 -99950127 + AluJb SINE Alu 129 170 -142 1091 122 0 0 chr9 42321509 42321665 -99949779 - AluJb SINE Alu -24 288 133 356 306 66 0 chr9 42321907 42322028 -99949416 + L2 LINE L2 3182 3310 -3 2554 84 40 13 chr9 42322116 42322561 -99948883 + LTR21A LTR ERV1 1 490 -15 2613 97 156 97 chr9 42322561 42322599 -99948845 + HERVFH21 LTR ERV1 5 39 -6490 183 42 0 0 chr9 42322599 42322623 -99948821 + (CTCA)n Simple_repeat Simple_repeat 2 25 0 2613 97 156 97 chr9 42322623 42323043 -99948401 + HERVFH21 LTR ERV1 39 511 -6018 2544 47 0 0 chr9 42323043 42323342 -99948102 - AluY SINE Alu -12 299 1 2613 97 156 97 chr9 42323342 42323499 -99947945 + HERVFH21 LTR ERV1 511 657 -5872 1658 194 71 49 chr9 42323516 42323708 -99947736 + LTR2B LTR ERV1 32 218 -272 2402 64 0 0 chr9 42323708 42324003 -99947441 + AluY SINE Alu 1 295 -16 1658 194 71 49 chr9 42324003 42324259 -99947185 + LTR2B LTR ERV1 218 490 0 8399 156 3 27 chr9 42324259 42325939 -99945505 + HERVFH21 LTR ERV1 652 2291 -4238 3992 92 19 3 chr9 42325937 42326554 -99944890 + HERVFH21 LTR ERV1 3075 3701 -2828 * 1486 93 0 0 chr9 42326580 42326773 -99944671 - AluSx SINE Alu -119 193 1 2042 83 0 0 chr9 42326773 42327074 -99944370 + HERVFH21 LTR ERV1 3685 3985 -2544 7500 144 12 7 chr9 42327234 42328673 -99942771 + HERVFH21 LTR ERV1 5344 6529 0 2542 93 47 7 chr9 42328673 42329120 -99942324 + LTR21A LTR ERV1 1 497 -8 1647 173 116 31 chr9 42329383 42329806 -99941638 + LTR2B LTR ERV1 32 490 0 2009 115 3 14 chr9 42329807 42330102 -99941342 - AluSx SINE Alu -20 292 1 2379 87 3 0 chr9 42330116 42330428 -99941016 - AluSp SINE Alu 0 313 1 2078 122 0 0 chr9 42330428 42330723 -99940721 - AluSx SINE Alu -16 296 2 2242 101 3 0 chr9 42331989 42332287 -99939157 + AluSq SINE Alu 1 299 -14 2405 73 0 3 chr9 42332309 42332611 -99938833 + AluY SINE Alu 1 301 -10 2379 87 0 3 chr9 42333114 42333423 -99938021 + AluY SINE Alu 1 308 -3 2207 107 0 0 chr9 42333825 42334125 -99937319 + AluSp SINE Alu 2 301 -12 270 336 56 8 chr9 42334471 42334596 -99936848 + MER34 LTR ERV1 352 482 -60 555 219 18 0 chr9 42334596 42334710 -99936734 - FLAM_C SINE Alu -8 135 20 553 119 0 30 chr9 42335194 42335295 -99936149 + MER4A LTR ERV1 1 98 -566 * 1267 148 53 74 chr9 42335291 42335648 -99935796 + MER4A LTR ERV1 257 664 0 1333 144 40 107 chr9 42336923 42337249 -99934195 - AluJo SINE Alu -8 304 1 2314 99 0 3 chr9 42338697 42339010 -99932434 - AluSq SINE Alu -1 312 1 1587 189 10 7 chr9 42339059 42339361 -99932083 - AluJb SINE Alu -3 309 7 479 262 94 71 chr9 42339395 42339768 -99931676 + Charlie8 DNA MER1_type 11 381 -2036 2190 91 0 26 chr9 42340746 42341053 -99930391 + AluSc SINE Alu 1 299 -10 180 354 0 0 chr9 42341063 42341111 -99930333 + MER5B DNA MER1_type 63 110 -68 2164 92 0 10 chr9 42342305 42342600 -99928844 - AluSg SINE Alu -14 296 5 206 180 0 40 chr9 42344114 42344164 -99927280 + G-rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr9 42344252 42344290 -99927154 + GC_rich Low_complexity Low_complexity 1 38 0 1949 108 87 0 chr9 42347032 42347319 -99924125 - AluSx SINE Alu 0 312 1 1696 168 3 23 chr9 42347321 42347631 -99923813 - AluJo SINE Alu -8 304 1 224 276 153 10 chr9 42347702 42347800 -99923644 - L2 LINE L2 -17 3255 3144 2082 100 45 0 chr9 42347906 42348197 -99923247 - AluSx SINE Alu -8 304 1 319 343 90 60 chr9 42348233 42348722 -99922722 - L2 LINE L2 -2 3270 2771 335 319 37 7 chr9 42349048 42349190 -99922254 - MIR SINE MIR -65 143 21 2247 99 0 0 chr9 42349455 42349749 -99921695 - AluSx SINE Alu -17 295 2 2150 92 3 0 chr9 42349757 42350072 -99921372 - AluSp SINE Alu 0 316 1 581 328 39 27 chr9 42350081 42350337 -99921107 + L2 LINE L2 2992 3250 -22 183 275 22 163 chr9 42350370 42350439 -99921005 + MIR3 SINE MIR 56 86 -122 1723 163 3 3 chr9 42350439 42350722 -99920722 - AluJb SINE Alu -29 283 1 183 275 22 163 chr9 42350722 42350830 -99920614 + MIR3 SINE MIR 86 208 0 222 278 40 66 chr9 42351308 42351459 -99919985 + L2 LINE L2 2857 3003 -310 1026 151 13 0 chr9 42351478 42351637 -99919807 - FRAM SINE Alu -16 160 1 2053 123 3 0 chr9 42351648 42351933 -99919511 - AluSx SINE Alu -26 286 1 2165 109 6 3 chr9 42352396 42352707 -99918737 - AluSx SINE Alu 0 312 1 1727 150 3 26 chr9 42353400 42353706 -99917738 - AluJo SINE Alu -13 299 1 417 335 94 28 chr9 42354059 42354346 -99917098 + L2 LINE L2 2919 3224 -48 2150 122 0 0 chr9 42354346 42354642 -99916802 + AluSx SINE Alu 2 297 -15 2214 114 0 0 chr9 42354888 42355185 -99916259 - AluSx SINE Alu -15 297 1 197 363 99 20 chr9 42355273 42355565 -99915879 - L2 LINE L2 -431 2883 2569 2386 100 0 0 chr9 42355750 42356061 -99915383 + AluSx SINE Alu 1 311 -1 1721 138 0 62 chr9 42356151 42356298 -99915146 + AluSq SINE Alu 1 123 -190 2386 77 0 0 chr9 42356298 42356595 -99914849 + AluSg SINE Alu 1 297 -13 1721 138 0 62 chr9 42356595 42356738 -99914706 + AluSq SINE Alu 123 273 -40 238 286 211 32 chr9 42357174 42357359 -99914085 - MIR SINE MIR -36 226 9 2209 104 0 10 chr9 42357872 42358179 -99913265 + AluSx SINE Alu 1 304 -8 2111 130 0 0 chr9 42358267 42358568 -99912876 - AluSx SINE Alu -11 301 1 602 281 30 4 chr9 42358776 42359074 -99912370 + MER87 LTR ERV1 209 541 0 244 257 0 124 chr9 42359086 42359199 -99912245 + L2 LINE L2 3085 3183 -89 508 361 23 18 chr9 42359286 42359505 -99911939 + MIR SINE MIR 28 247 -15 278 311 137 31 chr9 42360083 42360244 -99911200 - MIR SINE MIR -70 192 15 1504 166 41 51 chr9 42360693 42360819 -99910625 + AluJo SINE Alu 1 127 -185 1743 189 0 0 chr9 42360819 42361116 -99910328 - AluJo SINE Alu -15 297 1 1504 166 41 51 chr9 42361116 42361284 -99910160 + AluJo SINE Alu 127 292 -20 347 390 0 0 chr9 42361302 42361420 -99910024 + L1ME LINE L1 5701 5818 -303 327 318 58 76 chr9 42361435 42361658 -99909786 - MIR SINE MIR -11 251 33 2098 141 3 3 chr9 42361666 42361978 -99909466 - AluSx SINE Alu 0 312 1 1565 164 9 97 chr9 42361994 42362324 -99909120 - AluJo SINE Alu 0 302 2 2391 82 3 0 chr9 42362360 42362663 -99908781 + AluSq SINE Alu 1 304 -9 1145 80 0 13 chr9 42362524 42362665 -99908779 + AluSp/q SINE Alu 166 306 -7 2585 64 0 10 chr9 42362665 42362979 -99908465 + AluY SINE Alu 1 311 0 460 172 44 1 chr9 42362983 42363085 -99908359 + L1MB3 LINE L1 5725 5829 -354 * 787 169 0 0 chr9 42363086 42363204 -99908240 + FLAM_C SINE Alu 1 118 -15 2115 112 0 58 chr9 42363210 42363385 -99908059 - AluSx SINE Alu -17 295 144 2644 39 7 3 chr9 42363385 42363695 -99907749 - AluY SINE Alu 0 311 1 2115 112 0 58 chr9 42363695 42363832 -99907612 - AluSx SINE Alu -168 144 1 2604 39 19 19 chr9 42364284 42364595 -99906849 - AluY SINE Alu 0 311 1 2412 103 0 0 chr9 42364595 42364895 -99906549 - AluSx SINE Alu -12 300 1 1563 180 36 20 chr9 42364971 42365277 -99906167 - AluJo SINE Alu -1 311 1 208 254 28 14 chr9 42365281 42365352 -99906092 - MIR SINE MIR -66 142 71 2072 126 10 17 chr9 42365836 42366138 -99905306 - AluSx SINE Alu -12 300 1 1457 149 12 32 chr9 42366143 42366391 -99905053 - AluJo SINE Alu -8 304 62 1064 129 34 0 chr9 42366391 42366538 -99904906 - AluSq/x SINE Alu -160 152 1 294 176 154 22 chr9 42366913 42367004 -99904440 - MER117 DNA MER1_type -49 148 46 205 276 69 52 chr9 42367095 42367211 -99904233 - MIR SINE MIR -26 236 119 565 179 6 31 chr9 42367213 42367375 -99904069 + CT-rich Low_complexity Low_complexity 4 161 0 205 296 42 14 chr9 42367475 42367546 -99903898 - MIR SINE MIR -188 74 2 349 259 59 15 chr9 42367612 42367747 -99903697 + L1MC5 LINE L1 7785 7925 -36 2053 143 0 16 chr9 42367757 42368065 -99903379 + AluSx SINE Alu 1 303 -9 2347 107 0 3 chr9 42368107 42368406 -99903038 - AluSq SINE Alu -15 298 1 2703 43 0 0 chr9 42368450 42368754 -99902690 - AluY SINE Alu -7 304 1 1929 139 31 7 chr9 42368825 42369112 -99902332 - AluJo SINE Alu -18 294 1 2320 118 0 3 chr9 42369270 42369576 -99901868 - AluSp SINE Alu -8 305 1 21 36 0 0 chr9 42369580 42369608 -99901836 + AT_rich Low_complexity Low_complexity 1 28 0 1897 142 0 77 chr9 42369725 42369851 -99901593 + AluJo SINE Alu 2 136 -176 2223 85 53 0 chr9 42369851 42370133 -99901311 - AluSq SINE Alu -16 297 1 1897 142 0 77 chr9 42370133 42370343 -99901101 + AluJo SINE Alu 136 312 0 692 194 0 8 chr9 42370352 42370481 -99900963 + FLAM_A SINE Alu 1 128 -5 2345 85 0 0 chr9 42370484 42370818 -99900626 + AluSx SINE Alu 1 334 0 2072 107 0 77 chr9 42370821 42371135 -99900309 + AluSx SINE Alu 1 291 -21 699 99 0 0 chr9 42371135 42371236 -99900208 + (TA)n Simple_repeat Simple_repeat 2 102 0 2072 107 0 77 chr9 42371236 42371248 -99900196 + AluSx SINE Alu 291 302 -10 196 307 91 11 chr9 42371272 42371360 -99900084 - MIR SINE MIR -108 154 60 1860 169 3 10 chr9 42371981 42372283 -99899161 - AluJo SINE Alu -12 300 1 732 201 26 0 chr9 42372460 42372614 -99898830 - FRAM SINE Alu -8 158 1 1221 101 48 0 chr9 42372640 42372808 -99898636 - AluSg SINE Alu -95 215 40 480 137 14 0 chr9 42372863 42372936 -99898508 - AluS SINE Alu -237 75 2 1565 167 40 63 chr9 42372939 42373122 -99898322 - AluJb SINE Alu -16 296 121 2287 104 3 7 chr9 42373122 42373421 -99898023 + AluSx SINE Alu 1 298 -14 1565 167 40 63 chr9 42373421 42373536 -99897908 - AluJb SINE Alu -191 121 5 2474 58 3 0 chr9 42373544 42373837 -99897607 - AluY SINE Alu -17 294 1 245 118 0 0 chr9 42373888 42373922 -99897522 - Alu SINE Alu -265 34 1 24 0 0 0 chr9 42373931 42373955 -99897489 + AT_rich Low_complexity Low_complexity 1 24 0 1840 169 0 22 chr9 42373955 42374274 -99897170 + AluJo SINE Alu 1 312 0 1983 123 0 75 chr9 42375031 42375349 -99896095 - AluJo SINE Alu -14 298 5 981 106 8 0 chr9 42375444 42375576 -99895868 + AluSq/x SINE Alu 3 135 -177 2342 97 0 3 chr9 42375576 42375874 -99895570 + AluSx SINE Alu 1 297 -15 290 287 152 0 chr9 42376291 42376455 -99894989 + MIR SINE MIR 51 239 -23 2254 113 0 7 chr9 42376992 42377293 -99894151 - AluSx SINE Alu -13 299 1 2272 90 10 0 chr9 42377327 42377660 -99893784 + AluY SINE Alu 3 338 0 1929 159 3 10 chr9 42377720 42378021 -99893423 + AluJo SINE Alu 1 299 -13 2386 46 43 0 chr9 42378063 42378343 -99893101 + AluY SINE Alu 2 293 -18 2337 89 7 3 chr9 42378354 42378658 -99892786 + AluSx SINE Alu 1 305 -7 444 289 14 35 chr9 42378965 42379107 -99892337 + MIR SINE MIR 8 146 -116 821 230 0 0 chr9 42379110 42379271 -99892173 + AluJb SINE Alu 137 297 -15 248 234 16 16 chr9 42379273 42379337 -99892107 + MIR SINE MIR 151 214 -48 201 250 0 0 chr9 42379402 42379450 -99891994 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 2247 115 7 3 chr9 42379480 42379785 -99891659 - AluSx SINE Alu -6 306 1 567 179 0 0 chr9 42379824 42379919 -99891525 - AluJb SINE Alu -84 228 134 1904 95 0 8 chr9 42379919 42380161 -99891283 - AluSx SINE Alu -14 298 59 2120 221 25 41 chr9 42380226 42380657 -99890787 - MER74B LTR ERVL 0 622 186 2364 102 0 3 chr9 42380657 42380961 -99890483 - AluSx SINE Alu -9 303 1 2043 139 0 0 chr9 42380964 42381252 -99890192 - AluSx SINE Alu -24 288 1 2120 221 25 41 chr9 42381252 42381376 -99890068 - MER74B LTR ERVL -438 184 72 1077 189 0 0 chr9 42382009 42382178 -99889266 - AluJb SINE Alu -10 302 134 2213 97 33 10 chr9 42382178 42382478 -99888966 - AluSx SINE Alu -5 307 1 324 313 125 14 chr9 42382483 42382691 -99888753 + L2 LINE L2 2310 2540 -774 1221 135 0 0 chr9 42382691 42382861 -99888583 - FRAM SINE Alu -10 166 1 2106 127 0 39 chr9 42382888 42383195 -99888249 + AluSx SINE Alu 1 295 -17 2124 102 11 7 chr9 42383195 42383501 -99887943 + AluSx SINE Alu 1 308 0 1149 163 99 10 chr9 42383513 42383715 -99887729 + AluJo SINE Alu 1 220 -92 1425 76 0 0 chr9 42383741 42383912 -99887532 - AluY SINE Alu -8 303 133 1035 175 0 0 chr9 42383946 42384112 -99887332 + FRAM SINE Alu 1 166 0 262 278 156 20 chr9 42384114 42384368 -99887076 + L2 LINE L2 2741 3029 -243 27 73 0 0 chr9 42384380 42384435 -99887009 + AT_rich Low_complexity Low_complexity 1 55 0 1020 104 15 0 chr9 42384481 42384616 -99886828 - AluSq SINE Alu -12 301 165 485 139 0 0 chr9 42384616 42384688 -99886756 - AluSq SINE Alu -239 73 2 1723 140 52 65 chr9 42385074 42385382 -99886062 + AluJo SINE Alu 1 304 -8 2212 80 12 86 chr9 42385384 42385720 -99885724 + AluY SINE Alu 1 311 0 386 156 26 0 chr9 42385722 42385799 -99885645 + G-rich Low_complexity Low_complexity 5 83 0 293 115 0 19 chr9 42385788 42385840 -99885604 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 * 2338 78 4 0 chr9 42385980 42386298 -99885146 - AluSx SINE Alu 0 319 1 2189 120 3 7 chr9 42386299 42386608 -99884836 - AluSx SINE Alu -4 308 1 253 309 74 0 chr9 42387619 42387700 -99883744 + L2 LINE L2 3136 3222 -50 341 43 0 0 chr9 42387740 42387787 -99883657 + U7 snRNA snRNA 2 48 -15 25 0 0 0 chr9 42387806 42387831 -99883613 + AT_rich Low_complexity Low_complexity 1 25 0 1602 149 0 0 chr9 42387877 42388112 -99883332 + AluJo SINE Alu 70 304 -8 1255 206 29 19 chr9 42388307 42388623 -99882821 + L2 LINE L2 2575 2893 -421 558 168 9 18 chr9 42388625 42388738 -99882706 - AluJo/FRAM SINE Alu 0 312 201 2269 116 0 10 chr9 42388740 42389051 -99882393 + AluSq SINE Alu 1 308 -5 384 200 7 12 chr9 42389059 42389181 -99882263 - AluJ/FLAM SINE Alu -223 79 21 2242 97 23 0 chr9 42389564 42389738 -99881706 - AluSq SINE Alu -7 306 121 374 0 22 0 chr9 42389738 42389784 -99881660 + (TG)n Simple_repeat Simple_repeat 2 48 0 2242 97 23 0 chr9 42389784 42389908 -99881536 - AluSq SINE Alu -192 121 1 1860 164 7 0 chr9 42389919 42390211 -99881233 - AluJo SINE Alu -18 294 1 1675 158 49 18 chr9 42390693 42390978 -99880466 + AluJo SINE Alu 1 294 -18 2182 105 40 0 chr9 42390979 42391275 -99880169 + AluSq SINE Alu 1 308 -5 237 277 0 15 chr9 42391383 42391448 -99879996 + LTR67 LTR ERVL 490 553 -4 2592 71 3 0 chr9 42392192 42392502 -99878942 - AluY SINE Alu 0 311 1 201 133 0 0 chr9 42392521 42392551 -99878893 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2327 104 10 0 chr9 42392557 42392864 -99878580 - AluSg SINE Alu 0 310 1 460 170 37 15 chr9 42392866 42393001 -99878443 + CT-rich Low_complexity Low_complexity 3 140 0 1627 166 30 4 chr9 42393012 42393277 -99878167 - AluJb SINE Alu -5 307 36 1546 144 84 40 chr9 42393350 42393648 -99877796 - AluJo SINE Alu -1 311 1 466 260 39 11 chr9 42393806 42393982 -99877462 + MIR SINE MIR 20 196 -65 2388 97 0 3 chr9 42393985 42394285 -99877159 + AluSq SINE Alu 1 299 -14 381 154 110 0 chr9 42394286 42394377 -99877067 + MER113 DNA MER1_type? 1 101 -420 1911 133 32 39 chr9 42394594 42394652 -99876792 + AluJb SINE Alu 2 59 -253 2288 71 3 3 chr9 42394652 42394934 -99876510 - AluY SINE Alu -14 297 16 1911 133 32 39 chr9 42394934 42395184 -99876260 + AluJb SINE Alu 59 308 -4 2036 126 0 43 chr9 42395747 42396073 -99875371 + AluSq SINE Alu 1 312 -1 221 258 194 24 chr9 42397342 42397466 -99873978 - MIR3 SINE MIR -61 147 3 2069 138 3 7 chr9 42397466 42397770 -99873674 - AluSx SINE Alu -9 303 1 313 211 26 0 chr9 42398437 42398513 -99872931 + L1ME4a LINE L1 5750 5827 -1981 608 180 7 65 chr9 42398656 42398795 -99872649 + FLAM_C SINE Alu 1 131 -2 3590 159 22 112 chr9 42398797 42398897 -99872547 + L1MB7 LINE L1 5217 5324 -860 1909 149 20 10 chr9 42398897 42399198 -99872246 - AluJb SINE Alu -6 306 3 3590 159 22 112 chr9 42399198 42399219 -99872225 + L1MB7 LINE L1 5324 5345 -839 591 80 0 116 chr9 42399219 42399297 -99872147 - HY3 scRNA scRNA -2 99 36 2292 103 0 3 chr9 42399297 42399589 -99871855 + AluSx SINE Alu 1 291 -21 591 80 0 116 chr9 42399589 42399622 -99871822 - HY3 scRNA scRNA -65 36 1 3590 159 22 112 chr9 42399622 42399901 -99871543 + L1MB7 LINE L1 5345 5648 -536 1869 157 26 3 chr9 42399901 42400206 -99871238 - AluJb SINE Alu 0 312 1 3590 159 22 112 chr9 42400206 42400234 -99871210 + L1MB7 LINE L1 5648 5677 -507 2090 136 14 0 chr9 42400234 42400529 -99870915 + AluSx SINE Alu 1 299 -13 3590 159 22 112 chr9 42400529 42400769 -99870675 + L1MB7 LINE L1 5677 5937 -247 2310 98 0 0 chr9 42400769 42401056 -99870388 + AluSx SINE Alu 11 297 -15 3590 159 22 112 chr9 42401056 42401344 -99870100 + L1MB7 LINE L1 5937 6106 -78 2070 128 0 10 chr9 42401344 42401632 -99869812 - AluJb SINE Alu -14 298 14 3590 159 22 112 chr9 42401632 42401690 -99869754 + L1MB7 LINE L1 6106 6168 -16 387 248 223 6 chr9 42401698 42401855 -99869589 + L1ME4a LINE L1 5928 6118 -3 2294 116 0 0 chr9 42401858 42402159 -99869285 + AluSx SINE Alu 6 306 -6 2286 94 9 31 chr9 42402161 42402480 -99868964 + AluSp SINE Alu 1 312 -1 1713 168 0 21 chr9 42402484 42402770 -99868674 + AluJo SINE Alu 1 280 -32 198 0 0 0 chr9 42402777 42402799 -99868645 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 2648 53 0 0 chr9 42403185 42403487 -99867957 - AluY SINE Alu -9 302 1 2293 114 10 0 chr9 42403586 42403893 -99867551 + AluSx SINE Alu 1 310 -2 4666 186 30 14 chr9 42504084 42505880 -99765564 - L1PB3 LINE L1 -55 6099 4280 282 29 0 0 chr9 42506057 42506092 -99765352 + (TG)n Simple_repeat Simple_repeat 2 36 0 222 220 17 0 chr9 42506092 42506151 -99765293 + CT-rich Low_complexity Low_complexity 2 61 0 2233 275 50 65 chr9 42506168 42507465 -99763979 + SST1 Satellite centromeric 284 1560 -3 423 0 0 0 chr9 42507471 42507518 -99763926 + (TG)n Simple_repeat Simple_repeat 2 48 0 240 220 17 0 chr9 42507518 42507577 -99763867 + CT-rich Low_complexity Low_complexity 2 61 0 1386 284 32 47 chr9 42508316 42509225 -99762219 - SST1 Satellite centromeric -13 895 1 402 74 0 0 chr9 42509344 42509398 -99762046 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 215 309 137 7 chr9 42510288 42510427 -99761017 + MIR SINE MIR 104 260 -2 1092 155 0 4 chr9 42511202 42511923 -99759521 + (TGAG)n Simple_repeat Simple_repeat 1 717 0 325 299 108 37 chr9 42512127 42512341 -99759103 + MIR SINE MIR 10 238 -24 251 264 113 38 chr9 42512451 42512663 -99758781 + L2 LINE L2 2838 3065 -248 258 293 75 38 chr9 42513605 42513711 -99757733 + L2 LINE L2 3162 3271 -1 625 197 104 67 chr9 42514145 42514338 -99757106 - MER63A DNA MER1_type -10 200 1 320 324 6 22 chr9 42514485 42514667 -99756777 + (CA)n Simple_repeat Simple_repeat 2 180 0 28 0 0 0 chr9 42514932 42514960 -99756484 + AT_rich Low_complexity Low_complexity 1 28 0 1101 231 47 27 chr9 42515059 42515358 -99756086 - LTR68 LTR ERV1 -127 613 309 283 159 48 16 chr9 42515545 42515608 -99755836 - LTR68 LTR ERV1 -653 87 23 524 232 0 0 chr9 42515608 42515720 -99755724 + FRAM SINE Alu 63 174 -2 22 80 0 0 chr9 42516138 42516188 -99755256 + AT_rich Low_complexity Low_complexity 1 50 0 2636 158 5 2 chr9 42516916 42517316 -99754128 + MER61D LTR ERV1 1 401 -100 995 176 64 125 chr9 42517316 42517821 -99753623 + HUERS-P3b LTR ERV1 195 886 -2596 * 10937 188 38 53 chr9 42517820 42518448 -99752996 + HUERS-P3b LTR ERV1 609 1245 -5751 2349 64 3 49 chr9 42518448 42518774 -99752670 + AluY SINE Alu 1 311 0 10937 188 38 53 chr9 42518774 42520225 -99751219 + HUERS-P3b LTR ERV1 1245 2717 -4279 2031 142 27 33 chr9 42520225 42520591 -99750853 + THE1B LTR MaLR 1 364 0 10937 188 38 53 chr9 42520591 42523052 -99748392 + HUERS-P3b LTR ERV1 2717 6724 -272 180 0 0 0 chr9 42523052 42523072 -99748372 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 10937 188 38 53 chr9 42523072 42523340 -99748104 + HUERS-P3b LTR ERV1 6724 6995 -1 2602 169 34 28 chr9 42523341 42523660 -99747784 + MER61D LTR ERV1 1 326 -175 1937 134 3 7 chr9 42523660 42523951 -99747493 + AluSg SINE Alu 2 291 -19 2602 169 34 28 chr9 42523951 42524128 -99747316 + MER61D LTR ERV1 326 500 -1 894 195 19 123 chr9 42524505 42524813 -99746631 + MER93b LTR ERV1 98 373 0 1900 169 55 19 chr9 42524813 42525050 -99746394 + MER1B DNA MER1_type 1 255 -2457 1843 234 33 60 chr9 42525050 42525619 -99745825 - MLT2B3 LTR ERVL 0 554 1 1900 169 55 19 chr9 42525619 42525706 -99745738 + MER1B DNA MER1_type 255 337 -2 25 0 0 0 chr9 42526427 42526452 -99744992 + AT_rich Low_complexity Low_complexity 1 25 0 2663 198 23 45 chr9 42527411 42528031 -99743413 - L1MA6 LINE L1 -1 6299 5694 363 71 14 29 chr9 42528520 42528590 -99742854 + (TA)n Simple_repeat Simple_repeat 2 70 0 1605 203 3 3 chr9 42528629 42528935 -99742509 + AluJb SINE Alu 1 306 -6 511 292 40 32 chr9 42529419 42529696 -99741748 + L1ME3 LINE L1 5884 6162 0 25 65 0 0 chr9 42529743 42529789 -99741655 + AT_rich Low_complexity Low_complexity 1 46 0 361 297 115 33 chr9 42530253 42530435 -99741009 - MLT1J LTR MaLR -279 232 36 244 294 157 50 chr9 42532179 42532441 -99739003 - MLT1J2 LTR MaLR -24 426 137 3855 168 75 42 chr9 42533207 42534081 -99737363 - MER4D LTR ERV1 0 903 1 800 304 47 23 chr9 42534088 42534430 -99737014 + LTR16B LTR ERVL 109 458 -6 2459 152 39 0 chr9 42534732 42535146 -99736298 + MER57B LTR ERV1 1 430 -4 237 333 28 0 chr9 42535442 42535514 -99735930 + L2 LINE L2 3193 3266 -47 221 258 0 0 chr9 42536874 42536936 -99734508 + A-rich Low_complexity Low_complexity 1 62 0 1041 270 66 36 chr9 42537236 42537647 -99733797 - L1MC4 LINE L1 -321 7721 7299 1054 264 31 36 chr9 42537710 42538126 -99733318 - L1MC4 LINE L1 -733 7309 6896 584 302 80 22 chr9 42538127 42538438 -99733006 - L1M4 LINE L1 -1768 4378 4050 414 285 19 19 chr9 42538456 42538712 -99732732 + L1MEc LINE L1 2034 2289 -4107 288 324 124 16 chr9 42538832 42539082 -99732362 + L1MEc LINE L1 105 381 -6015 1875 152 66 20 chr9 42539085 42539433 -99732011 + THE1B LTR MaLR 1 364 0 242 324 81 36 chr9 42539451 42539698 -99731746 + L2 LINE L2 2933 3190 -123 1964 170 11 16 chr9 42539699 42540076 -99731368 + THE1C LTR MaLR 1 375 0 1330 279 82 42 chr9 42540469 42541699 -99729745 - L1M4 LINE L1 -2598 3548 2269 32 75 0 0 chr9 42541725 42541792 -99729652 + AT_rich Low_complexity Low_complexity 1 67 0 551 259 6 6 chr9 42541796 42541966 -99729478 - L1MEc LINE L1 -1521 4694 4525 249 304 101 14 chr9 42541968 42542175 -99729269 - L1MEc LINE L1 -2027 4188 3964 14150 30 0 0 chr9 42542188 42544639 -99726805 + L1PA3 LINE L1 3705 6155 0 742 269 75 27 chr9 42544655 42545219 -99726225 - L1MEc LINE L1 -2435 3780 3190 25 0 0 0 chr9 42545280 42545305 -99726139 + AT_rich Low_complexity Low_complexity 1 25 0 1024 225 56 70 chr9 42545320 42545666 -99725778 - MLT1A1 LTR MaLR -63 302 1 516 204 91 8 chr9 42545777 42545909 -99725535 - L1MA3 LINE L1 0 6305 6163 449 236 95 101 chr9 42545926 42546479 -99724965 - L1MEc LINE L1 -3720 2495 1985 401 290 21 86 chr9 42546603 42546789 -99724655 - MER96 DNA MER1_type? 0 175 2 23 0 0 0 chr9 42546875 42546898 -99724546 + AT_rich Low_complexity Low_complexity 1 23 0 321 271 6 54 chr9 42546899 42547065 -99724379 - HAL1 LINE L1 -961 1546 1389 325 266 42 16 chr9 42547255 42547447 -99723997 - L1MEc LINE L1 -5228 1168 972 795 329 26 23 chr9 42547526 42547915 -99723529 - L1MEc LINE L1 -5596 800 411 547 193 122 9 chr9 42547951 42548193 -99723251 - MLT1A1 LTR MaLR 0 390 1 186 403 0 0 chr9 42548198 42548270 -99723174 - L2 LINE L2 -358 2914 2843 1334 198 63 30 chr9 42548540 42548873 -99722571 + MER2 DNA MER2_type 1 344 0 188 292 79 22 chr9 42549321 42549410 -99722034 + L2 LINE L2 3175 3268 -4 971 274 80 6 chr9 42550481 42550820 -99720624 - MLT1A1 LTR MaLR -1 364 1 25 0 0 0 chr9 42551197 42551222 -99720222 + AT_rich Low_complexity Low_complexity 1 25 0 2397 73 0 16 chr9 42552493 42552809 -99718635 - AluY SINE Alu 0 311 1 4366 80 23 0 chr9 42553087 42553686 -99717758 + L1PA7 LINE L1 5506 6118 -36 1684 59 18 0 chr9 42553686 42553901 -99717543 + L1PA8 LINE L1 5948 6172 0 299 335 71 37 chr9 42553919 42554244 -99717200 + L1MEd LINE L1 586 921 -5284 277 351 71 18 chr9 42554609 42554834 -99716610 + L2 LINE L2 3073 3309 -4 470 341 76 22 chr9 42554868 42555235 -99716209 + L1MEd LINE L1 1436 1822 -4574 1287 250 46 131 chr9 42555285 42555936 -99715508 - MER77 LTR ERV1 -6 599 4 1460 268 43 48 chr9 42557345 42558013 -99713431 + L1M4 LINE L1 3573 4237 -1909 282 283 33 0 chr9 42558027 42558119 -99713325 + GA-rich Low_complexity Low_complexity 6 100 0 211 205 0 0 chr9 42558414 42558453 -99712991 + (CA)n Simple_repeat Simple_repeat 2 40 0 431 246 18 42 chr9 42558458 42558625 -99712819 - L1M4 LINE L1 -2383 3763 3601 * 3618 45 0 0 chr9 42558612 42559059 -99712385 - L1P LINE L1 -2143 4003 3557 6643 18 0 0 chr9 42559059 42559822 -99711622 + L1PA2 LINE L1 5389 6151 -4 702 265 106 45 chr9 42559857 42560153 -99711291 - L1M4 LINE L1 -2519 3627 3350 2061 136 0 0 chr9 42560153 42560461 -99710983 - AluSx SINE Alu -4 308 1 702 265 106 45 chr9 42560461 42560805 -99710639 - L1M4 LINE L1 -2796 3350 2948 50 31 0 0 chr9 42561189 42561253 -99710191 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr9 42561892 42561924 -99709520 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr9 42562274 42562310 -99709134 + AT_rich Low_complexity Low_complexity 1 36 0 811 300 63 12 chr9 42562853 42563014 -99708430 - SST1 Satellite centromeric -1129 434 283 342 0 0 0 chr9 42563014 42563052 -99708392 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 811 300 63 12 chr9 42563052 42563303 -99708141 - SST1 Satellite centromeric -1280 283 1 233 226 16 0 chr9 42564039 42564101 -99707343 + GA-rich Low_complexity Low_complexity 1 63 0 210 91 0 0 chr9 42564101 42564134 -99707310 + (CA)n Simple_repeat Simple_repeat 2 34 0 621 279 60 45 chr9 42564160 42564643 -99706801 - SST1 Satellite centromeric -14 1549 1060 26 74 0 0 chr9 42565147 42565201 -99706243 + AT_rich Low_complexity Low_complexity 1 54 0 393 22 0 0 chr9 42568246 42568292 -99703152 + (TG)n Simple_repeat Simple_repeat 1 46 0 21 57 0 0 chr9 42569315 42569350 -99702094 + AT_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr9 42569442 42569473 -99701971 + (CA)n Simple_repeat Simple_repeat 1 31 0 225 207 0 35 chr9 42570942 42571000 -99700444 + G-rich Low_complexity Low_complexity 3 58 0 843 200 0 0 chr9 42571638 42571793 -99699651 - FRAM SINE Alu -11 165 11 333 0 0 0 chr9 42572155 42572192 -99699252 + (GA)n Simple_repeat Simple_repeat 2 38 0 254 175 0 18 chr9 42574508 42574565 -99696879 + G-rich Low_complexity Low_complexity 3 58 0 1079 243 100 12 chr9 42574810 42575230 -99696214 - MLT1C LTR MaLR -10 457 1 186 216 0 0 chr9 42577260 42577297 -99694147 - L2 LINE L2 -244 3028 2992 180 264 35 58 chr9 42578307 42578394 -99693050 + MIR SINE MIR 108 192 -70 2125 223 55 12 chr9 42578537 42579115 -99692329 - LTR26 LTR ERV1 0 603 1 222 301 23 38 chr9 42580303 42580436 -99691008 + (CCCA)n Simple_repeat Simple_repeat 2 132 0 204 313 27 9 chr9 42580621 42580733 -99690711 + (TCTA)n Simple_repeat Simple_repeat 2 115 0 * 436 291 11 22 chr9 42580673 42580852 -99690592 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 553 283 176 17 chr9 42580936 42581293 -99690151 - L2 LINE L2 0 3313 2900 252 357 30 30 chr9 42581886 42582054 -99689390 + MIR SINE MIR 23 190 -72 605 302 122 6 chr9 42582095 42582602 -99688842 + MER92B LTR ERV1 4 569 -67 1767 135 29 22 chr9 42583016 42583358 -99688086 - MER4A LTR ERV1 0 664 262 620 117 43 0 chr9 42583359 42583453 -99687991 - MER4A LTR ERV1 -566 98 1 1152 153 23 23 chr9 42584143 42584359 -99687085 + AluJo SINE Alu 85 300 -12 203 279 0 64 chr9 42585106 42585246 -99686198 + CT-rich Low_complexity Low_complexity 3 133 0 216 296 0 69 chr9 42585677 42585866 -99685578 + C-rich Low_complexity Low_complexity 2 177 0 29 0 0 0 chr9 42586746 42586775 -99684669 + AT_rich Low_complexity Low_complexity 1 29 0 427 293 86 0 chr9 42587145 42587285 -99684159 - MIR SINE MIR -106 156 5 395 291 182 0 chr9 42587286 42587451 -99683993 - MIR SINE MIR -3 259 65 938 225 62 68 chr9 42587564 42587919 -99683525 + L1ME LINE L1 4755 5107 -1039 1406 192 0 11 chr9 42587926 42588212 -99683232 + AluJb SINE Alu 30 312 0 1066 278 15 14 chr9 42588245 42588595 -99682849 + L1ME LINE L1 5229 5578 -588 513 156 0 174 chr9 42588595 42588717 -99682727 - MLT1C LTR MaLR -329 138 51 1446 140 163 23 chr9 42588717 42588974 -99682470 - AluJo SINE Alu -9 293 1 513 156 0 174 chr9 42588974 42589018 -99682426 - MLT1C LTR MaLR -416 51 1 3860 98 45 63 chr9 42589388 42590034 -99681410 + MER51A LTR ERV1 1 634 0 873 238 6 98 chr9 42590111 42590426 -99681018 + MLT1A2 LTR MaLR 4 289 -85 457 259 9 0 chr9 42590426 42590542 -99680902 + MLT1A2 LTR MaLR 258 374 0 319 239 138 91 chr9 42590771 42591047 -99680397 + L1M4c LINE L1 1051 1339 -5045 2467 107 59 0 chr9 42591260 42591614 -99679830 + THE1C LTR MaLR 1 375 0 1511 200 13 13 chr9 42592182 42592487 -99678957 - LOR1a LTR ERV1 -5 492 188 293 253 27 0 chr9 42592490 42592565 -99678879 + G-rich Low_complexity Low_complexity 3 79 0 290 210 37 25 chr9 42592705 42592786 -99678658 + GA-rich Low_complexity Low_complexity 4 85 0 574 166 17 39 chr9 42592806 42592987 -99678457 + GA-rich Low_complexity Low_complexity 4 180 0 289 113 0 48 chr9 42592991 42593053 -99678391 + (GGGA)n Simple_repeat Simple_repeat 1 59 0 253 116 87 0 chr9 42593557 42593626 -99677818 + (CA)n Simple_repeat Simple_repeat 2 76 0 561 166 29 23 chr9 42593730 42593905 -99677539 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 934 110 29 0 chr9 42593934 42594107 -99677337 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 696 137 22 44 chr9 42594118 42594301 -99677143 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 550 160 15 0 chr9 42594317 42594448 -99676996 + (TGGA)n Simple_repeat Simple_repeat 3 135 0 22 0 0 0 chr9 42595387 42595409 -99676035 + AT_rich Low_complexity Low_complexity 1 22 0 1651 149 0 4 chr9 42595493 42595783 -99675661 + AluSx SINE Alu 35 312 0 22 35 0 0 chr9 42596764 42596793 -99674651 + AT_rich Low_complexity Low_complexity 1 29 0 2623 133 24 5 chr9 42597882 42598302 -99673142 + MSTA LTR MaLR 1 428 0 7647 191 68 10 chr9 42598302 42599863 -99671581 + MSTA-int LTR MaLR 1 1651 0 2418 155 21 16 chr9 42599863 42600289 -99671155 + MSTA LTR MaLR 1 428 0 1589 184 33 0 chr9 42600520 42600819 -99670625 + 7SLRNA srpRNA srpRNA 10 318 -2 22 0 0 0 chr9 42600918 42600940 -99670504 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 42601095 42601131 -99670313 + AT_rich Low_complexity Low_complexity 1 36 0 207 114 0 0 chr9 42601610 42601645 -99669799 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 42602535 42602556 -99668888 + AT_rich Low_complexity Low_complexity 1 21 0 216 214 0 0 chr9 42602621 42602663 -99668781 + A-rich Low_complexity Low_complexity 1 42 0 23 86 0 0 chr9 42603063 42603121 -99668323 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr9 42603496 42603519 -99667925 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 42604434 42604460 -99666984 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr9 42604711 42604741 -99666703 + AT_rich Low_complexity Low_complexity 1 30 0 1778 151 3 16 chr9 42604787 42605092 -99666352 - AluSg SINE Alu -9 301 1 1647 216 106 9 chr9 42605235 42605660 -99665784 - MER31B LTR ERV1 0 466 1 22 56 0 0 chr9 42606484 42606520 -99664924 + AT_rich Low_complexity Low_complexity 1 36 0 655 334 123 14 chr9 42607724 42608164 -99663280 + L2 LINE L2 2474 2961 -353 248 290 40 95 chr9 42608271 42608471 -99662973 + L2 LINE L2 3119 3307 -6 528 329 100 41 chr9 42608671 42609160 -99662284 - LTR33A LTR ERVL -4 519 2 2090 90 0 0 chr9 42609224 42609501 -99661943 + AluY SINE Alu 14 290 -21 200 97 32 0 chr9 42609657 42609688 -99661756 + (TG)n Simple_repeat Simple_repeat 2 33 0 243 245 0 0 chr9 42609828 42609881 -99661563 + L2 LINE L2 3214 3266 -6 305 322 143 63 chr9 42611146 42611432 -99660012 - L2 LINE L2 -4 3309 3001 13984 158 20 6 chr9 42612209 42614240 -99657204 + Tigger1 DNA MER2_type 24 2095 -323 1979 126 10 0 chr9 42614240 42614541 -99656903 + AluSx SINE Alu 7 310 -2 13984 158 20 6 chr9 42614541 42614869 -99656575 + Tigger1 DNA MER2_type 2095 2417 -1 322 280 109 36 chr9 42615020 42615213 -99656231 - L1ME4a LINE L1 -240 5881 5675 758 236 132 9 chr9 42615545 42615757 -99655687 - MER8 DNA MER2_type 0 239 2 23 54 0 0 chr9 42616962 42616999 -99654445 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr9 42617008 42617038 -99654406 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr9 42617304 42617332 -99654112 + AT_rich Low_complexity Low_complexity 1 28 0 1121 76 0 0 chr9 42617435 42617580 -99653864 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr9 42617748 42617787 -99653657 + AT_rich Low_complexity Low_complexity 1 39 0 25 51 0 0 chr9 42617845 42617884 -99653560 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr9 42617901 42617926 -99653518 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr9 42618036 42618080 -99653364 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr9 42618113 42618148 -99653296 + AT_rich Low_complexity Low_complexity 1 35 0 2170 120 0 19 chr9 42618178 42618486 -99652958 - AluY SINE Alu -9 302 1 628 231 13 26 chr9 42618612 42618768 -99652676 + MLT1A2 LTR MaLR 167 320 -54 1204 319 35 61 chr9 42618776 42620030 -99651414 + L1PA12 LINE L1 8 1762 -5819 2037 164 19 25 chr9 42620030 42620396 -99651048 + THE1B LTR MaLR 1 364 0 8994 123 7 2 chr9 42620396 42621771 -99649673 + THE1B-int LTR MaLR 1 1382 -198 18275 21 1 0 chr9 42621871 42624929 -99646515 + L1HS LINE L1 3096 6155 0 219 69 0 0 chr9 42624929 42624958 -99646486 + (A)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr9 42625360 42625390 -99646054 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr9 42625658 42625697 -99645747 + AT_rich Low_complexity Low_complexity 1 39 0 1065 90 0 0 chr9 42625789 42625934 -99645510 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr9 42626102 42626141 -99645303 + AT_rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr9 42626199 42626241 -99645203 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr9 42626258 42626283 -99645161 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 42626327 42626356 -99645088 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr9 42626395 42626439 -99645005 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr9 42626472 42626507 -99644937 + AT_rich Low_complexity Low_complexity 1 35 0 2171 120 0 23 chr9 42626537 42626846 -99644598 - AluY SINE Alu -9 302 1 662 229 51 6 chr9 42626971 42627128 -99644316 + MLT1A2 LTR MaLR 157 320 -54 1202 312 37 67 chr9 42627136 42628390 -99643054 + L1PA12 LINE L1 8 1762 -5819 2000 162 25 25 chr9 42628390 42628754 -99642690 + THE1B LTR MaLR 1 364 0 10769 109 5 2 chr9 42628754 42630325 -99641119 + THE1B-int LTR MaLR 1 1575 -5 1985 173 16 28 chr9 42630330 42630694 -99640750 + THE1B LTR MaLR 1 360 -4 6497 269 17 11 chr9 42630698 42632245 -99639199 + L1PA12 LINE L1 1539 3076 -4508 203 0 0 36 chr9 42632245 42632273 -99639171 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6497 269 17 11 chr9 42632273 42632450 -99638994 + L1PA12 LINE L1 3076 3251 -4333 1890 110 92 34 chr9 42632450 42632742 -99638702 + AluY SINE Alu 1 309 -2 6497 269 17 11 chr9 42632742 42634997 -99636447 + L1PA12 LINE L1 3251 5251 -2333 2020 206 47 0 chr9 42635028 42635513 -99635931 - L1 LINE L1 -1097 5049 4542 5063 142 2 5 chr9 42635514 42636311 -99635133 + THE1C-int LTR MaLR 786 1580 0 1948 162 32 19 chr9 42636311 42636681 -99634763 + THE1C LTR MaLR 1 375 0 2291 286 42 42 chr9 42636692 42636848 -99634596 - L1PA13 LINE L1 -4712 2075 1921 1820 139 30 26 chr9 42636848 42636870 -99634574 - AluSx SINE Alu -8 304 284 378 0 0 0 chr9 42636870 42636912 -99634532 + (TG)n Simple_repeat Simple_repeat 1 42 0 1820 139 30 26 chr9 42636912 42637191 -99634253 - AluSx SINE Alu -28 284 2 2291 286 42 42 chr9 42637191 42637494 -99633950 - L1PA13 LINE L1 -4866 1921 1620 252 0 0 0 chr9 42637494 42637522 -99633922 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2291 286 42 42 chr9 42637522 42638741 -99632703 - L1PA13 LINE L1 -5167 1620 1 215 268 0 0 chr9 42638962 42639018 -99632426 + CT-rich Low_complexity Low_complexity 1 56 0 684 340 57 36 chr9 42639057 42639702 -99631742 - L1MEd LINE L1 -4864 1255 597 1810 154 0 0 chr9 42640089 42640349 -99631095 - AluSg SINE Alu -16 294 35 28 29 0 0 chr9 42640401 42640436 -99631008 + AT_rich Low_complexity Low_complexity 1 35 0 240 192 128 0 chr9 42640892 42640970 -99630474 - Charlie2a DNA MER1_type -1231 1631 1544 1341 289 90 19 chr9 42641084 42642032 -99629412 - Charlie2a DNA MER1_type -1448 1414 400 1069 270 86 55 chr9 42642164 42642804 -99628640 + L1ME2 LINE L1 134 793 -5603 1117 269 57 35 chr9 42642860 42643406 -99628038 + L1ME2 LINE L1 5549 6106 -127 1088 260 72 49 chr9 42643563 42644136 -99627308 + L1ME2 LINE L1 5560 6145 -19 27 96 0 0 chr9 42644871 42644954 -99626490 + AT_rich Low_complexity Low_complexity 1 83 0 310 250 0 0 chr9 42645237 42645293 -99626151 + L1PA13 LINE L1 762 817 -5970 647 349 76 8 chr9 42645310 42645665 -99625779 + L1PA13 LINE L1 877 1255 -5532 941 264 38 106 chr9 42645739 42646379 -99625065 - LTR4 LTR ERV1 0 596 1 1305 220 82 14 chr9 42646392 42646835 -99624609 + LTR22 LTR ERVK 16 458 0 4050 176 21 34 chr9 42646837 42647775 -99623669 + L1PA13 LINE L1 1441 2380 -4417 2014 134 38 41 chr9 42647775 42648140 -99623304 - THE1B LTR MaLR 0 364 1 6802 132 16 6 chr9 42648140 42649250 -99622194 - THE1B-int LTR MaLR 0 1580 460 204 192 39 26 chr9 42649252 42649330 -99622114 + (TAAA)n Simple_repeat Simple_repeat 4 82 0 839 257 31 31 chr9 42650058 42650350 -99621094 - MER58B DNA MER1_type -14 327 36 4082 151 70 27 chr9 42650829 42651423 -99620021 - Tigger3b DNA MER2_type -1797 1231 587 7524 31 2 1 chr9 42651423 42652774 -99618670 + L1PA3 LINE L1 4801 6152 -3 4082 151 70 27 chr9 42652774 42653038 -99618406 - Tigger3b DNA MER2_type -2441 587 336 403 208 10 31 chr9 42653065 42653161 -99618283 - Tigger3b DNA MER2_type -1137 94 1 1898 119 21 25 chr9 42653252 42653537 -99617907 - AluSx SINE Alu -28 284 1 2148 231 35 69 chr9 42653624 42654308 -99617136 - MER76 LTR ERV -27 661 1 2223 58 43 0 chr9 42656522 42656827 -99614617 + AluY SINE Alu 1 311 0 2301 70 0 7 chr9 42657072 42657394 -99614050 + AluY SINE Alu 1 320 0 1280 191 105 18 chr9 42657481 42657758 -99613686 + AluJo SINE Alu 1 301 -11 24 0 0 0 chr9 42657836 42657860 -99613584 + AT_rich Low_complexity Low_complexity 1 24 0 1447 314 150 18 chr9 42658195 42658937 -99612507 + L1MD2 LINE L1 9 848 -5561 2296 229 4 13 chr9 42658937 42659182 -99612262 + MER70A LTR ERVL 1 242 -230 2313 87 16 10 chr9 42659182 42659491 -99611953 + AluSq SINE Alu 1 311 -2 2296 229 4 13 chr9 42659491 42659721 -99611723 + MER70A LTR ERVL 242 472 0 4521 199 85 6 chr9 42659730 42660719 -99610725 + MER70A-int LTR ERVL 10 1076 -3947 433 191 12 0 chr9 42660738 42660822 -99610622 + MER70A-int LTR ERVL 2300 2384 -2639 1815 106 35 22 chr9 42660822 42661216 -99610228 - LTR7 LTR ERV1 0 450 1 2686 97 7 11 chr9 42661216 42661649 -99609795 - HERVH LTR ERV1 0 7713 7283 6727 133 7 7 chr9 42661668 42663161 -99608283 - HERVH LTR ERV1 -2287 4242 3582 642 128 0 34 chr9 42663163 42663280 -99608164 - HERVH LTR ERV1 -4988 2725 2613 1831 122 26 9 chr9 42663287 42663678 -99607766 - LTR7 LTR ERV1 0 450 1 12900 187 38 14 chr9 42663678 42665828 -99605616 + MER70A-int LTR ERVL 2380 4604 -419 1960 135 3 20 chr9 42665828 42666125 -99605319 - AluSp SINE Alu -21 292 1 12900 187 38 14 chr9 42666125 42666555 -99604889 + MER70A-int LTR ERVL 4604 5022 -1 2067 222 4 68 chr9 42666563 42667067 -99604377 + MER70A LTR ERVL 1 472 0 1996 237 20 28 chr9 42667068 42667811 -99603633 + L1MD2 LINE L1 845 1585 -4821 1023 224 50 122 chr9 42667819 42668320 -99603124 - MLT1D LTR MaLR -40 465 1 3405 153 37 49 chr9 42668821 42669601 -99601843 - L1MA5 LINE L1 0 6300 5530 741 187 0 0 chr9 42669613 42669768 -99601676 - L1MA5 LINE L1 -1120 5026 4872 968 254 95 65 chr9 42669770 42670816 -99600628 + L1MD2 LINE L1 1571 2644 -3762 482 277 43 56 chr9 42671214 42671430 -99600014 + MER61D LTR ERV1 338 1237 -10 1847 241 43 53 chr9 42671430 42671660 -99599784 + L1MD2 LINE L1 2667 2898 -3508 273 109 0 0 chr9 42671660 42671706 -99599738 + (CA)n Simple_repeat Simple_repeat 1 46 0 1847 241 43 53 chr9 42671706 42672355 -99599089 + L1MD2 LINE L1 2898 3537 -2869 1106 216 23 32 chr9 42672332 42672680 -99598764 + L1MD2 LINE L1 5523 5867 -635 * 280 189 0 78 chr9 42672680 42672770 -99598674 - L1MA1 LINE L1 -233 6069 5987 30 45 0 0 chr9 42672788 42672832 -99598612 + AT_rich Low_complexity Low_complexity 1 44 0 773 251 78 32 chr9 42672832 42673115 -99598329 + L1MD2 LINE L1 5855 6150 -469 1275 233 78 78 chr9 42673159 42673971 -99597473 + SST1 Satellite centromeric 751 1562 -1 471 60 0 0 chr9 42673975 42674042 -99597402 + (TG)n Simple_repeat Simple_repeat 2 68 0 239 173 19 0 chr9 42674049 42674101 -99597343 + CT-rich Low_complexity Low_complexity 2 54 0 2640 266 71 52 chr9 42674840 42675091 -99596353 + SST1 Satellite centromeric 1 246 -1317 309 26 0 0 chr9 42675091 42675129 -99596315 + (CTGGGG)n Simple_repeat Simple_repeat 2 39 0 2640 266 71 52 chr9 42675129 42676409 -99595035 + SST1 Satellite centromeric 246 1562 -1 231 217 17 0 chr9 42676431 42676491 -99594953 + CT-rich Low_complexity Low_complexity 2 62 0 1942 284 45 62 chr9 42676508 42677810 -99593634 + SST1 Satellite centromeric 284 1562 -1 186 43 0 0 chr9 42677814 42677837 -99593607 + (TG)n Simple_repeat Simple_repeat 2 24 0 240 220 17 0 chr9 42677837 42677896 -99593548 + CT-rich Low_complexity Low_complexity 2 61 0 2783 276 52 55 chr9 42678628 42680639 -99590805 - SST1 Satellite centromeric -13 2292 250 309 26 0 0 chr9 42680639 42680677 -99590767 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 2783 276 52 55 chr9 42680677 42680927 -99590517 - SST1 Satellite centromeric -2055 250 1 249 210 16 0 chr9 42681660 42681722 -99589722 + GA-rich Low_complexity Low_complexity 1 63 0 261 57 0 0 chr9 42681722 42681757 -99589687 + (CA)n Simple_repeat Simple_repeat 2 36 0 796 264 67 52 chr9 42681783 42682260 -99589184 - SST1 Satellite centromeric -14 1549 1066 26 74 0 0 chr9 42682770 42682824 -99588620 + AT_rich Low_complexity Low_complexity 1 54 0 426 20 0 0 chr9 42683572 42683623 -99587821 + (CA)n Simple_repeat Simple_repeat 2 52 0 249 33 0 0 chr9 42685887 42685917 -99585527 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr9 42686943 42686978 -99584466 + AT_rich Low_complexity Low_complexity 1 35 0 330 26 0 0 chr9 42687066 42687105 -99584339 + (CA)n Simple_repeat Simple_repeat 1 39 0 206 167 0 30 chr9 42688608 42688674 -99582770 + G-rich Low_complexity Low_complexity 1 64 0 917 193 0 0 chr9 42689315 42689481 -99581963 - FRAM SINE Alu 0 166 1 369 43 0 0 chr9 42689833 42689880 -99581564 + (GA)n Simple_repeat Simple_repeat 2 48 0 580 183 0 42 chr9 42690358 42690400 -99581044 - MER5B DNA MER1_type -1 177 135 2186 126 3 3 chr9 42690400 42690710 -99580734 - AluSq SINE Alu -3 310 1 580 183 0 42 chr9 42690710 42690787 -99580657 - MER5B DNA MER1_type -43 135 63 2695 103 30 32 chr9 42690787 42691225 -99580219 - L1PA2 LINE L1 -62 6093 5657 1742 14 0 0 chr9 42691097 42691305 -99580139 + L1P1 LINE L1 5593 5800 -355 * 280 42 62 21 chr9 42691307 42691355 -99580089 - MER5B DNA MER1_type -121 57 8 396 290 48 41 chr9 42692172 42692317 -99579127 + MIR SINE MIR 27 172 -90 361 292 43 65 chr9 42692475 42692660 -99578784 - MIR SINE MIR -61 201 21 * 911 237 24 43 chr9 42692604 42692673 -99578771 + MIR SINE MIR 13 82 -180 1829 135 2 121 chr9 42692673 42693087 -99578357 - MER47A DNA MER2_type -1 365 1 911 237 24 43 chr9 42693087 42693270 -99578174 + MIR SINE MIR 82 260 -2 213 328 23 8 chr9 42694125 42694224 -99577220 - MIR SINE MIR -65 143 44 396 276 16 0 chr9 42694959 42695082 -99576362 - MIR3 SINE MIR 0 208 84 257 260 180 0 chr9 42695118 42695218 -99576226 - L2 LINE L2 -2 3270 3153 408 231 11 0 chr9 42696847 42696938 -99574506 - MIR SINE MIR -115 147 56 209 108 27 0 chr9 42696961 42696998 -99574446 + GA-rich Low_complexity Low_complexity 3 40 0 190 301 78 29 chr9 42697195 42697298 -99574146 + MIR3 SINE MIR 15 122 -86 238 375 0 0 chr9 42698016 42698112 -99573332 - L3b LINE CR1 -189 1394 1299 1294 253 113 21 chr9 42698613 42699156 -99572288 - L2 LINE L2 -18 3295 2696 2136 137 0 0 chr9 42699156 42699448 -99571996 - AluSg SINE Alu -18 292 1 1294 253 113 21 chr9 42699448 42699625 -99571819 - L2 LINE L2 -617 2696 2537 2223 121 0 7 chr9 42702210 42702517 -99568927 - AluSx SINE Alu -7 305 1 620 279 60 0 chr9 42702699 42702882 -99568562 - MIR SINE MIR -10 252 59 191 321 18 0 chr9 42702979 42703035 -99568409 - MIR SINE MIR -115 93 37 773 72 9 0 chr9 42703072 42703183 -99568261 - HY1 scRNA scRNA 0 112 1 327 213 18 29 chr9 42703292 42703453 -99567991 + MIR SINE MIR 29 260 -2 28 29 0 0 chr9 42703813 42703848 -99567596 + AT_rich Low_complexity Low_complexity 1 35 0 23 86 0 0 chr9 42704524 42704582 -99566862 + AT_rich Low_complexity Low_complexity 1 58 0 318 239 109 0 chr9 42706244 42706336 -99565108 - L2 LINE L2 -10 3303 3202 3019 6 0 0 chr9 42706514 42706832 -99564612 - AluYb8 SINE Alu 0 318 1 441 152 0 0 chr9 42707160 42707226 -99564218 + AluJ/FLAM SINE Alu 9 74 -238 267 109 0 55 chr9 42707260 42707315 -99564129 + Alu SINE Alu 251 302 0 745 193 0 0 chr9 42707321 42707456 -99563988 + AluJb SINE Alu 168 302 -10 2112 121 0 3 chr9 42707461 42707750 -99563694 + AluSx SINE Alu 21 308 -4 207 247 146 0 chr9 42707928 42708017 -99563427 + L2 LINE L2 2920 3021 -251 560 226 81 32 chr9 42708658 42708844 -99562600 + L2 LINE L2 3117 3311 -2 469 261 54 8 chr9 42708861 42708991 -99562453 + L2 LINE L2 3137 3272 0 1918 162 3 16 chr9 42709405 42709713 -99561731 + AluJb SINE Alu 1 304 -8 369 327 51 0 chr9 42712107 42712263 -99559181 + L2 LINE L2 3101 3264 -8 351 0 0 0 chr9 42712547 42712572 -99558872 + (CCA)n Simple_repeat Simple_repeat 1 64 0 351 0 0 0 chr9 42712572 42712611 -99558833 + (CCA)n Simple_repeat Simple_repeat 3 41 0 301 333 56 0 chr9 42712963 42713089 -99558355 - MIR3 SINE MIR -6 202 70 2141 128 3 3 chr9 42713090 42713387 -99558057 + AluSx SINE Alu 1 297 -15 237 271 0 0 chr9 42713418 42713466 -99557978 - MIR SINE MIR -124 84 37 1719 149 73 0 chr9 42713536 42713797 -99557647 - AluJb SINE Alu -32 280 1 488 254 71 12 chr9 42713797 42713966 -99557478 - MIR SINE MIR -71 191 13 425 259 182 0 chr9 42714700 42714843 -99556601 - MER5A DNA MER1_type 0 189 21 608 336 66 24 chr9 42714984 42715083 -99556361 + L2 LINE L2 2959 3052 -261 2374 91 0 0 chr9 42715083 42715426 -99556018 - AluSp SINE Alu 0 343 1 608 336 66 24 chr9 42715426 42715658 -99555786 + L2 LINE L2 3052 3305 -8 2128 142 7 0 chr9 42715659 42715969 -99555475 + AluSx SINE Alu 1 312 0 509 333 7 0 chr9 42716304 42716448 -99554996 - L2 LINE L2 -1 3271 3127 289 235 62 0 chr9 42717643 42717724 -99553720 - MIR3 SINE MIR -15 193 108 611 208 116 51 chr9 42718611 42718827 -99552617 - MIR SINE MIR -10 252 23 303 93 0 0 chr9 42718945 42718988 -99552456 + MIR SINE MIR 104 146 -62 324 312 24 8 chr9 42719326 42719451 -99551993 - LTR33 LTR ERVL -5 516 390 288 258 149 63 chr9 42719503 42719724 -99551720 - LTR33 LTR ERVL -235 286 47 222 252 180 18 chr9 42720094 42720205 -99551239 + L2 LINE L2 3142 3270 -2 2788 16 0 10 chr9 42720533 42720845 -99550599 - AluY SINE Alu -2 309 1 525 262 27 13 chr9 42721123 42721272 -99550172 + MIR SINE MIR 48 198 -64 637 179 9 0 chr9 42721285 42721391 -99550053 + FLAM_A SINE Alu 1 107 -35 2048 107 35 24 chr9 42721402 42721692 -99549752 - AluSq SINE Alu -20 293 1 2281 109 6 0 chr9 42722342 42722653 -99548791 + AluSq SINE Alu 1 313 0 280 244 114 41 chr9 42722717 42722840 -99548604 + MIR SINE MIR 64 195 -67 233 178 0 68 chr9 42723103 42723176 -99548268 + L2 LINE L2 3163 3230 -83 2499 156 17 13 chr9 42723710 42724179 -99547265 + L1MB7 LINE L1 5714 6184 0 299 213 133 0 chr9 42724880 42724955 -99546489 + MIR3 SINE MIR 76 160 -48 347 343 58 0 chr9 42725200 42725372 -99546072 + MIR SINE MIR 49 230 -32 2058 143 0 3 chr9 42725413 42725707 -99545737 - AluSx SINE Alu -19 293 1 367 290 127 82 chr9 42725771 42726174 -99545270 - MLT1J2 LTR MaLR -21 429 9 358 256 160 0 chr9 42726600 42726756 -99544688 + MIR SINE MIR 70 250 -12 228 323 11 11 chr9 42727087 42727180 -99544264 + MIR SINE MIR 40 132 -76 1059 223 36 8 chr9 42727608 42727859 -99543585 - MIR SINE MIR 0 262 5 673 215 30 33 chr9 42727861 42728063 -99543381 - MIR SINE MIR -3 259 64 1981 292 36 43 chr9 42730623 42731660 -99539784 - SST1 Satellite centromeric -534 1029 1 297 89 0 0 chr9 42732359 42732404 -99539040 + (CA)n Simple_repeat Simple_repeat 2 46 0 265 200 17 0 chr9 42732411 42732471 -99538973 + GA-rich Low_complexity Low_complexity 2 62 0 1195 189 57 111 chr9 42732691 42733077 -99538367 - MLT1A1 LTR MaLR 0 365 1 741 246 86 64 chr9 42733450 42733778 -99537666 - L1P5 LINE L1 -352 5804 5484 2592 89 3 43 chr9 42733778 42734148 -99537296 + THE1A LTR MaLR 1 355 0 11309 114 2 1 chr9 42734148 42735725 -99535719 + THE1A-int LTR MaLR 1 1580 0 2194 141 3 22 chr9 42735725 42736087 -99535357 + THE1A LTR MaLR 1 355 0 741 246 86 64 chr9 42736087 42736251 -99535193 - L1P5 LINE L1 -671 5485 5305 1925 147 3 3 chr9 42736373 42736659 -99534785 - AluSq SINE Alu -25 288 3 823 174 0 0 chr9 42736882 42737014 -99534430 - FLAM_C SINE Alu -1 132 1 1391 214 39 0 chr9 42737472 42737592 -99533852 + AluJb SINE Alu 1 115 -197 198 0 0 0 chr9 42737592 42737614 -99533830 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1391 214 39 0 chr9 42737614 42737778 -99533666 + AluJb SINE Alu 115 296 -16 4139 154 44 4 chr9 42737780 42738461 -99532983 + Tigger1 DNA MER2_type 1066 1773 -645 2192 123 7 0 chr9 42738461 42738762 -99532682 - AluSp SINE Alu -10 303 1 587 233 23 114 chr9 42738819 42739038 -99532406 + MER115 DNA AcHobo 445 643 -50 498 101 82 6 chr9 42739221 42739379 -99532065 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 33 56 0 0 chr9 42739379 42739433 -99532011 + AT_rich Low_complexity Low_complexity 1 54 0 3726 146 2 43 chr9 42739433 42739940 -99531504 + Tigger1 DNA MER2_type 1801 2277 -141 2012 121 39 0 chr9 42739940 42740220 -99531224 - AluSx SINE Alu -20 292 2 3726 146 2 43 chr9 42740220 42740357 -99531087 + Tigger1 DNA MER2_type 2277 2418 0 377 267 22 22 chr9 42740360 42740495 -99530949 - LTR16C LTR ERVL -17 474 340 1129 272 109 28 chr9 42740842 42741388 -99530056 + MER115 DNA AcHobo 15 643 -50 1737 113 14 18 chr9 42741796 42742080 -99529364 - L1MA4 LINE L1 0 6300 6018 344 240 118 98 chr9 42742400 42742604 -99528840 - MIR SINE MIR -11 251 44 1980 151 0 7 chr9 42742704 42743003 -99528441 + AluSx SINE Alu 1 297 -15 274 307 50 0 chr9 42743100 42743201 -99528243 - L2 LINE L2 -15 3298 3193 352 335 56 19 chr9 42743751 42743966 -99527478 - MIR SINE MIR -12 250 28 33 90 0 0 chr9 42744350 42744439 -99527005 + AT_rich Low_complexity Low_complexity 1 89 0 576 111 0 11 chr9 42744623 42744713 -99526731 - L1PA16 LINE L1 -9 6157 6069 743 181 0 51 chr9 42744951 42745089 -99526355 + FLAM_A SINE Alu 1 131 -2 1476 221 20 6 chr9 42745090 42745418 -99526026 - MER93a LTR ERV1 -7 395 17 201 74 0 0 chr9 42745562 42745589 -99525855 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 557 212 0 18 chr9 42745941 42746054 -99525390 - AluSp SINE Alu -101 212 102 1843 155 3 7 chr9 42746146 42746436 -99525008 + AluJb SINE Alu 1 289 -23 2233 118 7 3 chr9 42747285 42747590 -99523854 + AluSq SINE Alu 5 310 -3 496 303 77 30 chr9 42747721 42748058 -99523386 + L1ME3A LINE L1 5421 5773 -389 44 35 0 0 chr9 42748072 42748130 -99523314 + AT_rich Low_complexity Low_complexity 1 58 0 1853 157 0 0 chr9 42748130 42748416 -99523028 - AluSx SINE Alu -24 288 3 2024 127 16 38 chr9 42748418 42748591 -99522853 - AluSx SINE Alu -4 308 144 1818 159 7 0 chr9 42748591 42748874 -99522570 - AluY SINE Alu -19 292 8 2024 127 16 38 chr9 42748874 42749015 -99522429 - AluSx SINE Alu -168 144 1 258 226 54 21 chr9 42749055 42749148 -99522296 + L1ME3A LINE L1 5852 5947 -223 1474 143 4 29 chr9 42749196 42749434 -99522010 + AluSg/x SINE Alu 66 297 -15 21 36 0 0 chr9 42749434 42749462 -99521982 + AT_rich Low_complexity Low_complexity 1 28 0 298 120 50 2 chr9 42749792 42750034 -99521410 + AluSq SINE Alu 1 292 -11 3374 179 39 10 chr9 42750300 42750988 -99520456 + L1MC2 LINE L1 5616 6323 -21 414 0 0 0 chr9 42750993 42751039 -99520405 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2128 113 0 0 chr9 42751042 42751325 -99520119 - AluY SINE Alu -28 283 1 1049 166 0 0 chr9 42751328 42751485 -99519959 - AluJb SINE Alu -19 293 137 1326 214 23 5 chr9 42751490 42751805 -99519639 + L1MC/D LINE L1 5370 5629 -715 40 0 0 0 chr9 42751805 42751845 -99519599 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr9 42752024 42752047 -99519397 + AT_rich Low_complexity Low_complexity 1 23 0 866 222 14 32 chr9 42752320 42752536 -99518908 + AluSx SINE Alu 1 212 -100 235 182 0 0 chr9 42752545 42752589 -99518855 + Charlie1 DNA MER1_type 2718 2761 0 521 195 24 24 chr9 42752597 42752720 -99518724 - L2 LINE L2 -4 3309 3187 1040 122 0 0 chr9 42752758 42752897 -99518547 + AluSq/x SINE Alu 3 141 -171 2195 96 0 45 chr9 42752897 42753211 -99518233 + AluSx SINE Alu 1 300 -12 682 158 8 23 chr9 42753350 42753517 -99517927 - AluSp/q SINE Alu 0 313 176 2094 117 0 0 chr9 42753573 42753854 -99517590 + AluSg SINE Alu 29 309 -1 228 323 77 8 chr9 42753907 42754037 -99517407 + HAL1 LINE L1 2219 2357 -150 2290 214 117 8 chr9 42754242 42754762 -99516682 - MER77 LTR ERV1 -28 577 1 233 308 15 0 chr9 42754778 42754843 -99516601 + L1MC/D LINE L1 5511 5576 -2232 1858 172 3 7 chr9 42754874 42755176 -99516268 - AluJb SINE Alu -11 301 1 260 209 57 19 chr9 42755176 42755209 -99516235 + (TATATG)n Simple_repeat Simple_repeat 6 36 -78 1867 152 38 0 chr9 42755209 42755499 -99515945 + AluSx SINE Alu 1 301 -11 260 209 57 19 chr9 42755499 42755570 -99515874 + (TATATG)n Simple_repeat Simple_repeat 36 114 0 1667 167 22 22 chr9 42755870 42756182 -99515262 - MER44D DNA MER2_type -1 604 421 1850 157 3 40 chr9 42756183 42756576 -99514868 - AluSx SINE Alu 0 381 1 264 252 68 0 chr9 42756649 42756752 -99514692 + HAL1b LINE L1 1234 1343 -5 1836 169 11 0 chr9 42756887 42757166 -99514278 + AluSx SINE Alu 3 284 -28 1902 138 7 0 chr9 42757255 42757530 -99513914 + AluSx SINE Alu 1 277 -35 423 0 0 0 chr9 42757534 42757581 -99513863 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr9 42758671 42758692 -99512752 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1542 197 14 7 chr9 42759520 42759810 -99511634 - AluJb SINE Alu -20 292 1 555 160 0 3 chr9 42759936 42760173 -99511271 + AluSx SINE Alu 1 311 -1 1475 183 47 19 chr9 42760258 42760580 -99510864 - L1MB8 LINE L1 0 6178 5848 837 255 49 75 chr9 42761015 42761498 -99509946 - PABL_B LTR ERV1 -42 625 1 1982 151 3 0 chr9 42761749 42762061 -99509383 - AluSq SINE Alu 0 313 1 2085 124 3 0 chr9 42762063 42762353 -99509091 - AluSx SINE Alu -21 291 1 1222 123 0 6 chr9 42762356 42762535 -99508909 - AluSq SINE Alu -5 308 131 23 0 0 0 chr9 42762537 42762560 -99508884 + AT_rich Low_complexity Low_complexity 1 23 0 499 115 13 0 chr9 42762810 42762888 -99508556 + AluY SINE Alu 217 295 -16 21 0 0 0 chr9 42762982 42763003 -99508441 + AT_rich Low_complexity Low_complexity 1 21 0 2027 131 3 16 chr9 42763175 42763480 -99507964 + AluSx SINE Alu 1 301 -11 1986 141 7 0 chr9 42763787 42764206 -99507238 + AluSx SINE Alu 4 424 0 1829 169 6 10 chr9 42765018 42765331 -99506113 - AluJb SINE Alu 0 312 1 2143 113 7 10 chr9 42765399 42765714 -99505730 + AluSp SINE Alu 1 314 0 1880 170 0 26 chr9 42765789 42766100 -99505344 + AluJo SINE Alu 1 303 -9 2113 138 0 0 chr9 42766100 42766396 -99505048 + AluSc SINE Alu 1 296 -13 1493 165 34 4 chr9 42766396 42766662 -99504782 - MER54A LTR ERVL -627 274 1 1493 151 140 0 chr9 42766839 42767104 -99504340 - AluSx SINE Alu 0 302 1 2263 107 3 0 chr9 42767704 42768002 -99503442 - AluSp SINE Alu -14 299 1 1475 166 6 94 chr9 42768007 42768338 -99503106 - AluSq SINE Alu -11 302 1 275 225 0 56 chr9 42768791 42768862 -99502582 - AluJ/FRAM SINE Alu -11 291 225 27 62 0 0 chr9 42768884 42768932 -99502512 + AT_rich Low_complexity Low_complexity 1 48 0 217 273 33 83 chr9 42769255 42769376 -99502068 + L2 LINE L2 3193 3307 -6 531 323 102 43 chr9 42769576 42770065 -99501379 - LTR33A LTR ERVL -4 519 2 1982 144 7 0 chr9 42770129 42770427 -99501017 + AluSp SINE Alu 14 313 0 849 183 12 47 chr9 42770427 42770596 -99500848 + AluSg/x SINE Alu 132 294 -16 759 178 0 30 chr9 42770807 42770942 -99500502 + FLAM_C SINE Alu 3 133 -10 416 87 43 11 chr9 42770942 42771034 -99500410 + A-rich Low_complexity Low_complexity 4 98 0 331 167 0 56 chr9 42771060 42771132 -99500312 + AluJ/FRAM SINE Alu 225 292 -10 1378 197 4 0 chr9 42771588 42771837 -99499607 + AluJb SINE Alu 1 250 -62 231 154 0 0 chr9 42771837 42771876 -99499568 + Alu SINE Alu 39 77 -226 1444 125 68 17 chr9 42771976 42772304 -99499140 - MER4B LTR ERV1 -264 502 1 450 239 181 18 chr9 42772304 42772530 -99498914 - L2 LINE L2 -2993 321 59 359 185 37 0 chr9 42772911 42772992 -99498452 + LTR16A1 LTR ERVL 374 457 0 334 308 71 44 chr9 42774395 42774577 -99496867 - L1ME3A LINE L1 -14 6156 5970 852 119 30 0 chr9 42774609 42774743 -99496701 + AluSg/x SINE Alu 154 291 -19 643 179 38 0 chr9 42774772 42774878 -99496566 - AluSq/x SINE Alu -202 111 2 265 268 57 8 chr9 42775007 42775130 -99496314 - HAL1b LINE L1 -5 1343 1215 1865 189 0 0 chr9 42775186 42775633 -99495811 + AluSx SINE Alu 4 450 0 1442 183 12 61 chr9 42775633 42775961 -99495483 + MER44D DNA MER2_type 421 604 -1 234 197 49 0 chr9 42776241 42776302 -99495142 + (TA)n Simple_repeat Simple_repeat 2 65 0 1865 172 3 0 chr9 42776319 42776616 -99494828 - AluSx SINE Alu -14 298 1 1869 174 3 0 chr9 42776649 42776943 -99494501 + AluJb SINE Alu 1 295 -17 2006 194 21 5 chr9 42777063 42777586 -99493858 + MER77 LTR ERV1 2 577 -28 2279 100 0 16 chr9 42777828 42778139 -99493305 - AluY SINE Alu -5 306 1 2313 120 3 0 chr9 42778284 42778593 -99492851 - AluSg SINE Alu 0 310 1 2342 158 19 12 chr9 42778665 42779083 -99492361 - L1PA15 LINE L1 0 6165 5745 1941 246 9 14 chr9 42779093 42779528 -99491916 + L1P LINE L1 4730 5163 -983 1915 117 19 0 chr9 42779528 42779794 -99491650 + AluSg SINE Alu 40 310 0 1941 246 9 14 chr9 42779794 42779920 -99491524 + L1P LINE L1 5163 5288 -858 259 221 0 39 chr9 42779923 42780000 -99491444 + MER89 LTR ERV1 486 559 0 1849 142 7 21 chr9 42780055 42780343 -99491101 + AluSg SINE Alu 3 286 -24 2044 139 0 3 chr9 42780351 42780646 -99490798 + AluSg SINE Alu 1 294 -16 1457 115 5 0 chr9 42780646 42780860 -99490584 + AluSq SINE Alu 100 314 0 1932 172 0 25 chr9 42780935 42781249 -99490195 + AluJo SINE Alu 1 306 -6 2016 146 14 0 chr9 42781249 42781543 -99489901 + AluSc SINE Alu 1 298 -11 1422 162 34 4 chr9 42781543 42781809 -99489635 - MER54A LTR ERVL -627 274 1 1546 142 142 0 chr9 42781992 42782252 -99489192 - AluSx SINE Alu -5 297 1 2268 111 3 0 chr9 42782852 42783150 -99488294 - AluSp SINE Alu -14 299 1 1116 177 5 20 chr9 42783155 42783353 -99488091 - AluSg/x SINE Alu -16 294 100 1623 151 8 0 chr9 42783353 42783605 -99487839 + AluSp SINE Alu 60 313 0 841 184 12 48 chr9 42783605 42783773 -99487671 + AluSg/x SINE Alu 132 293 -17 308 198 64 31 chr9 42783984 42784102 -99487342 + AluJo SINE Alu 3 116 -186 1061 14 35 0 chr9 42784102 42784244 -99487200 + (TAAAA)n Simple_repeat Simple_repeat 2 148 0 308 198 64 31 chr9 42784244 42784342 -99487102 + AluJo SINE Alu 116 292 -10 1412 189 4 0 chr9 42784799 42785043 -99486401 + AluJb SINE Alu 1 245 -67 1968 126 7 7 chr9 42785043 42785321 -99486123 + AluSx SINE Alu 34 311 -1 1241 224 17 23 chr9 42785364 42785663 -99485781 + AluJb SINE Alu 15 311 -1 3896 178 82 30 chr9 42785719 42786450 -99484994 - MER21B LTR ERV1 -1 862 83 2182 112 16 32 chr9 42786450 42786763 -99484681 + AluSx SINE Alu 3 310 -2 3896 178 82 30 chr9 42786763 42786851 -99484593 - MER21B LTR ERV1 -780 83 1 1732 169 20 48 chr9 42787152 42787549 -99483895 - LTR25 LTR ERV1 -47 747 362 818 142 148 39 chr9 42787549 42787877 -99483567 + LTR46 LTR ERV1 1 460 0 592 200 35 0 chr9 42787877 42787980 -99483464 - LTR25 LTR ERV1 -438 356 250 384 165 23 120 chr9 42787974 42788107 -99483337 - MER61E LTR ERV1 -417 152 33 * 1369 81 17 0 chr9 42788747 42788920 -99482524 + AluSg/x SINE Alu 114 289 -21 494 299 130 42 chr9 42788922 42789276 -99482168 - L2 LINE L2 -82 3231 2847 277 105 0 0 chr9 42789328 42789366 -99482078 - Alu SINE Alu -264 38 1 2358 107 3 0 chr9 42789739 42790048 -99481396 - AluSx SINE Alu -2 310 1 1807 180 3 0 chr9 42790086 42790392 -99481052 - AluSx SINE Alu -1 311 5 1973 149 10 3 chr9 42790624 42790932 -99480512 + AluSx SINE Alu 1 310 -2 1611 186 136 45 chr9 42790935 42791220 -99480224 - MER106B DNA MER1_type -527 532 274 1816 159 10 7 chr9 42791220 42791515 -99479929 - AluSx SINE Alu -16 296 1 1611 186 136 45 chr9 42791515 42791613 -99479831 - MER106B DNA MER1_type -785 274 186 2242 130 0 0 chr9 42791613 42791914 -99479530 + AluSx SINE Alu 1 301 -11 1611 186 136 45 chr9 42791914 42792014 -99479430 - MER106B DNA MER1_type -873 186 4 2214 125 0 0 chr9 42792016 42792312 -99479132 + AluSx SINE Alu 1 296 -16 948 202 13 111 chr9 42792328 42792471 -99478973 + L1MC4a LINE L1 6602 6654 -1154 750 150 0 57 chr9 42792471 42792611 -99478833 - FLAM_C SINE Alu -1 132 1 948 202 13 111 chr9 42792611 42792829 -99478615 + L1MC4a LINE L1 6654 6892 -916 2121 127 7 3 chr9 42792829 42793128 -99478316 - AluSq SINE Alu -12 301 2 1296 107 5 88 chr9 42793466 42793711 -99477733 - AluSp SINE Alu 0 313 100 2048 136 0 3 chr9 42793711 42794005 -99477439 - AluSg SINE Alu -17 293 1 1876 139 7 21 chr9 42794013 42794301 -99477143 - AluSg SINE Alu -24 286 3 259 221 0 39 chr9 42794356 42794433 -99477011 - MER89 LTR ERV1 0 559 486 2013 238 9 14 chr9 42794436 42794562 -99476882 - L1P LINE L1 -858 5288 5163 1907 117 19 0 chr9 42794562 42794827 -99476617 - AluSg SINE Alu -1 309 40 2013 238 9 14 chr9 42794827 42795262 -99476182 - L1P LINE L1 -983 5163 4730 2342 158 19 12 chr9 42795272 42795690 -99475754 + L1PA15 LINE L1 5745 6165 0 2346 113 3 0 chr9 42795762 42796071 -99475373 + AluSg SINE Alu 1 310 0 2205 90 0 17 chr9 42796214 42796535 -99474909 + AluY SINE Alu 1 316 0 1994 196 19 5 chr9 42796783 42797307 -99474137 - MER77 LTR ERV1 -28 577 2 1869 174 3 0 chr9 42797427 42797721 -99473723 - AluJb SINE Alu -17 295 1 246 214 71 9 chr9 42797721 42797754 -99473690 + (TA)n Simple_repeat Simple_repeat 2 32 -88 1865 172 3 0 chr9 42797754 42798051 -99473393 + AluSx SINE Alu 1 298 -14 246 214 71 9 chr9 42798051 42798129 -99473315 + (TA)n Simple_repeat Simple_repeat 31 120 0 1442 183 12 61 chr9 42798409 42798737 -99472707 - MER44D DNA MER2_type -1 604 421 1847 192 0 0 chr9 42798737 42799184 -99472260 - AluSx SINE Alu 0 450 4 265 268 57 8 chr9 42799240 42799363 -99472081 + HAL1b LINE L1 1215 1343 -5 643 179 38 0 chr9 42799492 42799598 -99471846 + AluSq/x SINE Alu 2 111 -201 896 118 22 0 chr9 42799627 42799762 -99471682 - AluSg/x SINE Alu -19 293 156 327 319 66 39 chr9 42799794 42799976 -99471468 + L1ME3A LINE L1 5970 6156 -14 182 257 29 43 chr9 42800118 42800188 -99471256 - L2 LINE L2 -27 3245 3177 527 214 166 62 chr9 42801381 42801689 -99469755 - LTR16A1 LTR ERVL 0 457 118 481 240 187 18 chr9 42801843 42802068 -99469376 + L2 LINE L2 59 321 -2993 2463 121 45 49 chr9 42802068 42802668 -99468776 + MER4E LTR ERV1 1 766 0 480 270 83 34 chr9 42802737 42802941 -99468503 + L2 LINE L2 651 864 -2450 740 71 71 5 chr9 42802945 42803099 -99468345 + LTR19A LTR ERV1 7 241 -245 246 119 0 0 chr9 42803099 42803141 -99468303 + LTR19A LTR ERV1 445 486 0 239 231 92 15 chr9 42803141 42803271 -99468173 + L2 LINE L2 879 1018 -2296 209 291 63 38 chr9 42803287 42803445 -99467999 - L3 LINE CR1 -315 1262 1101 * 264 303 148 16 chr9 42803420 42803542 -99467902 + L2 LINE L2 3163 3300 -13 528 161 60 0 chr9 42803557 42803706 -99467738 + (TGGA)n Simple_repeat Simple_repeat 4 161 0 763 152 35 10 chr9 42803736 42804237 -99467207 + (TGGA)n Simple_repeat Simple_repeat 1 513 0 690 191 21 9 chr9 42804256 42804588 -99466856 + (TGGA)n Simple_repeat Simple_repeat 1 336 0 1463 213 10 10 chr9 42805381 42805691 -99465753 + AluJo SINE Alu 1 310 -2 298 281 13 0 chr9 42806090 42806177 -99465267 - MIR SINE MIR -65 143 80 328 308 32 32 chr9 42807212 42807397 -99464047 + L2 LINE L2 3111 3295 -18 754 139 0 0 chr9 42807397 42807512 -99463932 - AluSx SINE Alu -4 306 192 1106 106 0 0 chr9 42807513 42807654 -99463790 - AluSx SINE Alu -171 141 1 779 147 0 29 chr9 42807707 42807843 -99463601 + FLAM_C SINE Alu 12 143 0 1113 321 88 18 chr9 42807860 42808595 -99462849 - L1M4 LINE L1 -1492 4654 3868 549 273 74 24 chr9 42808839 42809176 -99462268 + MER74B LTR ERVL 213 566 -56 253 88 0 0 chr9 42809302 42809336 -99462108 - AluSg/x SINE Alu -192 108 75 * 1572 250 120 25 chr9 42809326 42809499 -99461945 + MER69B DNA AcHobo 520 675 -1851 1698 161 50 4 chr9 42809499 42809778 -99461666 - AluJb SINE Alu -20 292 1 1572 250 120 25 chr9 42809778 42810211 -99461233 + MER69B DNA AcHobo 675 1184 -42 400 246 100 4 chr9 42810726 42810849 -99460595 + MER20 DNA MER1_type 35 162 -57 234 156 44 0 chr9 42811196 42811241 -99460203 - MIR SINE MIR -108 154 108 335 194 15 0 chr9 42811935 42812002 -99459442 + MIR SINE MIR 77 144 -118 2046 115 0 37 chr9 42812044 42812370 -99459074 + AluSq SINE Alu 1 315 0 817 200 6 29 chr9 42812395 42812565 -99458879 + FAM SINE Alu 1 42 -7 683 170 63 68 chr9 42813883 42814166 -99457278 + MSTD LTR MaLR 2 328 -68 2295 117 0 0 chr9 42814166 42814475 -99456969 - AluSx SINE Alu -3 309 1 683 170 63 68 chr9 42814475 42814493 -99456951 + MSTD LTR MaLR 328 345 -51 601 243 14 7 chr9 42814477 42814625 -99456819 - MLT1C LTR MaLR -285 182 34 * 1929 114 0 29 chr9 42814634 42814906 -99456538 - AluSx SINE Alu -14 298 35 638 232 6 17 chr9 42814956 42815133 -99456311 - HAL1b LINE L1 -882 466 292 235 204 0 0 chr9 42815236 42815280 -99456164 + AluJ/monomer SINE Alu 3 46 -120 1271 181 10 50 chr9 42815641 42815821 -99455623 - AluJo SINE Alu -5 307 142 1672 186 56 0 chr9 42815821 42815988 -99455456 - AluJb SINE Alu -11 301 110 256 64 43 0 chr9 42815988 42816035 -99455409 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 1672 186 56 0 chr9 42816035 42816152 -99455292 - AluJb SINE Alu -202 110 1 1271 181 10 50 chr9 42816152 42816269 -99455175 - AluJo SINE Alu -170 142 22 2649 108 4 9 chr9 42816276 42816771 -99454673 - MER41B LTR ERV1 -12 542 1 904 273 22 83 chr9 42817181 42817672 -99453772 + MLT1J LTR MaLR 37 497 -14 658 217 14 7 chr9 42817771 42817914 -99453530 + MER83C LTR ERV1 49 192 -181 228 257 40 0 chr9 42818320 42818394 -99453050 + MER83B LTR ERV1 121 197 -181 822 251 94 0 chr9 42818453 42818676 -99452768 + MER83C LTR ERV1 130 373 0 423 210 39 22 chr9 42818700 42818828 -99452616 - MIR SINE MIR -67 141 61 624 194 0 0 chr9 42821056 42821190 -99450254 + (TCCA)n Simple_repeat Simple_repeat 3 136 0 908 154 6 0 chr9 42821201 42821376 -99450068 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 687 224 0 0 chr9 42821354 42821533 -99449911 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 * 353 234 20 37 chr9 42821835 42821854 -99449590 - ORSL DNA AcHobo -4 271 253 3801 113 11 31 chr9 42821854 42821989 -99449455 - MER4A LTR ERV1 0 600 464 1958 109 0 4 chr9 42821989 42822291 -99449153 - AluSg1 SINE Alu 0 307 7 3801 113 11 31 chr9 42822291 42822766 -99448678 - MER4A LTR ERV1 -136 464 1 353 234 20 37 chr9 42822766 42822963 -99448481 - ORSL DNA AcHobo -22 253 22 3320 161 18 76 chr9 42823436 42824170 -99447274 + LTR8 LTR ERV1 1 691 0 959 305 73 9 chr9 42825494 42825920 -99445524 + L1MC/D LINE L1 5298 5750 -2058 451 143 42 29 chr9 42826120 42826584 -99444860 + (CA)n Simple_repeat Simple_repeat 1 470 0 195 190 11 56 chr9 42826689 42826868 -99444576 + (CA)n Simple_repeat Simple_repeat 2 172 0 317 165 29 29 chr9 42826918 42827088 -99444356 + (CA)n Simple_repeat Simple_repeat 1 170 0 681 273 60 0 chr9 42827371 42827554 -99443890 - MIR SINE MIR -10 252 59 203 321 18 0 chr9 42827641 42827697 -99443747 - MIR SINE MIR -115 93 37 797 81 9 0 chr9 42827734 42827845 -99443599 - HY1 scRNA scRNA 0 112 1 351 213 18 29 chr9 42827954 42828115 -99443329 + MIR SINE MIR 29 260 -2 21 36 0 0 chr9 42828475 42828503 -99442941 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr9 42829178 42829237 -99442207 + AT_rich Low_complexity Low_complexity 1 59 0 337 239 109 0 chr9 42830901 42830993 -99440451 - L2 LINE L2 -10 3303 3202 461 152 0 0 chr9 42831484 42831550 -99439894 + AluJ/FLAM SINE Alu 9 74 -238 261 127 0 55 chr9 42831584 42831639 -99439805 + Alu SINE Alu 251 302 0 771 193 0 0 chr9 42831646 42831781 -99439663 + AluJb SINE Alu 168 302 -10 1639 136 12 0 chr9 42831787 42832044 -99439400 + AluSx SINE Alu 21 280 -32 351 0 0 0 chr9 42832045 42832084 -99439360 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 190 246 18 53 chr9 42833211 42833268 -99438176 - L3 LINE CR1 -8 1569 1515 340 278 59 65 chr9 42833516 42833685 -99437759 + L2 LINE L2 3131 3298 -15 2052 125 0 0 chr9 42833782 42834077 -99437367 - AluSg SINE Alu -15 295 1 1925 107 35 24 chr9 42834727 42835017 -99436427 + AluSq SINE Alu 1 293 -20 661 179 9 0 chr9 42835028 42835134 -99436310 - FLAM_A SINE Alu -35 107 1 568 256 119 12 chr9 42835147 42835315 -99436129 - MIR SINE MIR -64 198 13 262 252 180 18 chr9 42835892 42836003 -99435441 - L2 LINE L2 -2 3270 3142 234 156 44 0 chr9 42836488 42836533 -99434911 - MIR SINE MIR -108 154 108 330 194 15 0 chr9 42837227 42837294 -99434150 + MIR SINE MIR 77 144 -118 1969 108 0 40 chr9 42837336 42837679 -99433765 + AluSq SINE Alu 1 331 0 791 203 43 0 chr9 42837700 42837863 -99433581 + FAM SINE Alu 1 170 -5 721 198 158 33 chr9 42839193 42839481 -99431963 + MSTD LTR MaLR 2 337 -59 2137 115 0 0 chr9 42839481 42839785 -99431659 - AluSx SINE Alu -8 304 1 619 250 14 7 chr9 42839787 42839935 -99431509 - MLT1C LTR MaLR -285 182 34 * 1849 99 0 29 chr9 42839944 42840216 -99431228 - AluSx SINE Alu -14 298 35 621 243 6 17 chr9 42840266 42840443 -99431001 - HAL1b LINE L1 -882 466 292 333 156 250 73 chr9 42840546 42840642 -99430802 + FLAM_A SINE Alu 3 115 -18 2157 104 7 0 chr9 42840729 42841037 -99430407 - AluSg SINE Alu 0 310 1 898 208 14 54 chr9 42841432 42841607 -99429837 - AluJo SINE Alu -6 306 146 1711 158 0 48 chr9 42841607 42841923 -99429521 - AluJb SINE Alu -11 301 1 898 208 14 54 chr9 42841923 42842041 -99429403 - AluJo SINE Alu -166 146 25 726 158 0 0 chr9 42842051 42842165 -99429279 - MER41B LTR ERV1 -12 623 510 2751 84 5 11 chr9 42842167 42842546 -99428898 - MER41B LTR ERV1 -258 377 1 227 121 0 0 chr9 42842547 42842580 -99428864 - AluJo SINE Alu -269 33 1 305 276 264 23 chr9 42842838 42843012 -99428432 + L1ME2 LINE L1 5912 6127 -37 413 111 48 0 chr9 42843018 42843081 -99428363 + MLT1J LTR MaLR 6 71 -396 1009 269 22 83 chr9 42843664 42844155 -99427289 + MLT1J LTR MaLR 37 497 -14 700 217 14 7 chr9 42844254 42844397 -99427047 + MER83C LTR ERV1 49 192 -181 234 192 39 0 chr9 42844575 42844627 -99426817 + MER83B LTR ERV1 134 187 -191 887 247 94 0 chr9 42844636 42844859 -99426585 + MER83C LTR ERV1 130 373 0 413 217 16 28 chr9 42844889 42845011 -99426433 - MIR SINE MIR -67 141 61 337 165 28 34 chr9 42847307 42847483 -99423961 + (CA)n Simple_repeat Simple_repeat 2 176 0 290 182 20 45 chr9 42847533 42847947 -99423497 + (CA)n Simple_repeat Simple_repeat 1 403 0 235 176 12 53 chr9 42847966 42848136 -99423308 + (CA)n Simple_repeat Simple_repeat 2 164 0 423 132 15 49 chr9 42848171 42848443 -99423001 + (CA)n Simple_repeat Simple_repeat 1 262 0 222 164 14 50 chr9 42848490 42848630 -99422814 + (CA)n Simple_repeat Simple_repeat 2 136 0 202 167 8 56 chr9 42848665 42848791 -99422653 + (CA)n Simple_repeat Simple_repeat 1 120 0 264 217 28 38 chr9 42848812 42848918 -99422526 + (CA)n Simple_repeat Simple_repeat 2 106 0 328 242 85 7 chr9 42848930 42849083 -99422361 + L1MC4a LINE L1 6067 6231 -1577 269 286 31 56 chr9 42849487 42849648 -99421796 + L1MC4 LINE L1 6831 6987 -1055 1086 209 72 11 chr9 42849820 42850244 -99421200 + MLT1D LTR MaLR 5 501 -4 264 319 33 66 chr9 42850633 42850842 -99420602 - L2 LINE L2 -883 2431 2229 1915 137 7 3 chr9 42850842 42851134 -99420310 + AluSc SINE Alu 1 293 -16 264 319 33 66 chr9 42851134 42851165 -99420279 - L2 LINE L2 -1085 2229 2199 1199 249 39 21 chr9 42851522 42851852 -99419592 - MER4D LTR ERV1 0 903 568 1525 177 14 7 chr9 42851919 42852202 -99419242 - MER49 LTR ERV1 -638 285 1 1991 93 0 4 chr9 42852716 42852994 -99418450 - AluSg SINE Alu -33 277 1 5547 168 11 16 chr9 42853069 42854132 -99417312 - L1 LINE L1 -1579 4567 3510 437 268 70 66 chr9 42854922 42855165 -99416279 + L1MB2 LINE L1 174 417 -5896 5455 233 52 29 chr9 42855167 42856437 -99415007 + L1MB2 LINE L1 2052 3339 -3043 2135 98 7 0 chr9 42856437 42856733 -99414711 + AluY SINE Alu 1 298 -13 5455 233 52 29 chr9 42856733 42857665 -99413779 + L1MB2 LINE L1 3339 4248 -2134 341 191 26 29 chr9 42857715 42857808 -99413636 + L1MB2 LINE L1 4233 4324 -2058 * 42411 60 7 2 chr9 42857804 42863926 -99407518 + L1PA5 LINE L1 2 6154 0 4671 190 55 30 chr9 42863935 42863965 -99407479 + L1MB2 LINE L1 4312 4340 -2067 2287 55 3 35 chr9 42863965 42864275 -99407169 - AluY SINE Alu -11 300 1 4671 190 55 30 chr9 42864275 42864649 -99406795 + L1MB2 LINE L1 4340 4703 -1704 1932 127 0 10 chr9 42864649 42864968 -99406476 + AluJb SINE Alu 1 312 0 4671 190 55 30 chr9 42864968 42866599 -99404845 + L1MB2 LINE L1 4703 6389 -18 2155 72 3 28 chr9 42866613 42866931 -99404513 - AluY SINE Alu -1 310 1 228 341 0 0 chr9 42867047 42867129 -99404315 - MER81 DNA DNA -16 98 17 484 194 21 11 chr9 42867744 42867837 -99403607 - MER20 DNA MER1_type -125 94 1 2394 55 3 3 chr9 42868093 42868403 -99403041 + AluY SINE Alu 1 310 -1 328 173 44 118 chr9 42868554 42868586 -99402858 + L1ME LINE L1 5638 5671 -491 2370 62 0 13 chr9 42868586 42868891 -99402553 + AluY SINE Alu 1 301 -10 328 173 44 118 chr9 42868891 42869040 -99402404 + L1ME LINE L1 5671 5800 -362 2485 49 0 0 chr9 42869064 42869370 -99402074 + AluY SINE Alu 1 306 -5 22 35 0 0 chr9 42870271 42870300 -99401144 + AT_rich Low_complexity Low_complexity 1 29 0 2197 97 0 13 chr9 42870861 42871169 -99400275 - AluY SINE Alu -7 304 1 23 33 0 0 chr9 42871192 42871222 -99400222 + AT_rich Low_complexity Low_complexity 1 30 0 441 335 37 5 chr9 42871634 42871822 -99399622 - L1M4 LINE L1 -1693 4453 4260 285 29 0 0 chr9 42871830 42871864 -99399580 + (CA)n Simple_repeat Simple_repeat 2 35 0 6804 61 2 24 chr9 42871864 42873256 -99398188 - L1PA7 LINE L1 -20 6134 4774 6634 192 47 31 chr9 42873341 42875498 -99395946 - L1MB5 LINE L1 -6 6168 3959 2048 121 0 36 chr9 42875498 42875804 -99395640 - AluSg SINE Alu -15 295 1 6634 192 47 31 chr9 42875804 42876211 -99395233 - L1MB5 LINE L1 -2215 3959 3560 4029 92 21 9 chr9 42876217 42876790 -99394654 - L1PB2 LINE L1 -2 6149 5570 2421 80 0 6 chr9 42876790 42877103 -99394341 + AluY SINE Alu 1 311 0 6979 170 9 17 chr9 42877144 42878366 -99393078 - L1PB2 LINE L1 -565 5586 4384 2186 135 0 3 chr9 42878366 42878678 -99392766 - AluSx SINE Alu -1 311 1 6979 170 9 17 chr9 42878678 42879131 -99392313 - L1PB2 LINE L1 -1767 4384 3929 6666 201 20 14 chr9 42879132 42880636 -99390808 + L1PB2 LINE L1 2398 3910 -2236 371 206 0 49 chr9 42880629 42880731 -99390713 - L1MB5 LINE L1 -2565 3581 3485 * 908 154 6 0 chr9 42880871 42881046 -99390398 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 666 229 0 0 chr9 42881024 42881203 -99390241 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 * 347 234 20 37 chr9 42881505 42881524 -99389920 - ORSL DNA AcHobo -4 271 253 3788 113 11 31 chr9 42881524 42881659 -99389785 - MER4A LTR ERV1 0 600 464 2062 113 0 4 chr9 42881659 42881966 -99389478 - AluSg1 SINE Alu 0 312 7 3788 113 11 31 chr9 42881966 42882441 -99389003 - MER4A LTR ERV1 -136 464 1 347 234 20 37 chr9 42882441 42882638 -99388806 - ORSL DNA AcHobo -22 253 22 3298 161 18 76 chr9 42883111 42883845 -99387599 + LTR8 LTR ERV1 1 691 0 920 305 73 9 chr9 42885091 42885517 -99385927 + L1MC/D LINE L1 5298 5750 -2058 228 323 11 11 chr9 42886090 42886183 -99385261 + MIR SINE MIR 40 132 -76 1059 223 36 8 chr9 42886611 42886862 -99384582 - MIR SINE MIR 0 262 5 673 215 30 33 chr9 42886864 42887066 -99384378 - MIR SINE MIR -3 259 64 988 294 39 28 chr9 42889626 42890163 -99381281 - SST1 Satellite centromeric -534 1029 487 1855 144 4 0 chr9 42890164 42890428 -99381016 - AluSp SINE Alu -48 265 1 587 233 23 114 chr9 42890485 42890704 -99380740 + MER115 DNA AcHobo 445 643 -50 498 101 82 6 chr9 42890887 42891045 -99380399 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 33 56 0 0 chr9 42891045 42891099 -99380345 + AT_rich Low_complexity Low_complexity 1 54 0 3554 154 3 43 chr9 42891099 42891605 -99379839 + Tigger1 DNA MER2_type 1801 2277 -141 2025 118 39 0 chr9 42891605 42891885 -99379559 - AluSx SINE Alu -20 292 2 3554 154 3 43 chr9 42891885 42892022 -99379422 + Tigger1 DNA MER2_type 2277 2418 0 377 267 22 22 chr9 42892025 42892160 -99379284 - LTR16C LTR ERVL -17 474 340 1157 270 109 28 chr9 42892507 42893053 -99378391 + MER115 DNA AcHobo 15 643 -50 1737 113 14 18 chr9 42893461 42893745 -99377699 - L1MA4 LINE L1 0 6300 6018 333 245 118 98 chr9 42894069 42894273 -99377171 - MIR SINE MIR -11 251 44 1980 151 0 7 chr9 42894373 42894672 -99376772 + AluSx SINE Alu 1 297 -15 274 307 50 0 chr9 42894769 42894870 -99376574 - L2 LINE L2 -15 3298 3193 352 335 56 19 chr9 42895420 42895635 -99375809 - MIR SINE MIR -12 250 28 33 90 0 0 chr9 42896019 42896108 -99375336 + AT_rich Low_complexity Low_complexity 1 89 0 576 111 0 11 chr9 42896292 42896382 -99375062 - L1PA16 LINE L1 -9 6157 6069 743 181 0 51 chr9 42896620 42896758 -99374686 + FLAM_A SINE Alu 1 131 -2 1475 221 21 7 chr9 42896759 42897087 -99374357 - MER93a LTR ERV1 -7 395 17 201 74 0 0 chr9 42897231 42897258 -99374186 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 557 212 0 18 chr9 42897610 42897723 -99373721 - AluSp SINE Alu -101 212 102 1831 155 3 7 chr9 42897815 42898105 -99373339 + AluJb SINE Alu 1 289 -23 2238 128 0 0 chr9 42898955 42899260 -99372184 + AluSq SINE Alu 5 309 -4 496 303 77 30 chr9 42899391 42899728 -99371716 + L1ME3A LINE L1 5421 5773 -389 44 35 0 0 chr9 42899742 42899800 -99371644 + AT_rich Low_complexity Low_complexity 1 58 0 1831 161 0 0 chr9 42899800 42900086 -99371358 - AluSx SINE Alu -24 288 3 2024 127 16 38 chr9 42900088 42900261 -99371183 - AluSx SINE Alu -4 308 144 1700 170 7 3 chr9 42900261 42900544 -99370900 - AluY SINE Alu -20 291 8 2024 127 16 38 chr9 42900544 42900685 -99370759 - AluSx SINE Alu -168 144 1 258 226 54 21 chr9 42900725 42900818 -99370626 + L1ME3A LINE L1 5852 5947 -223 1474 143 4 29 chr9 42900866 42901104 -99370340 + AluSg/x SINE Alu 66 297 -15 21 36 0 0 chr9 42901104 42901132 -99370312 + AT_rich Low_complexity Low_complexity 1 28 0 289 129 50 2 chr9 42901462 42901704 -99369740 + AluSq SINE Alu 1 292 -11 3314 177 40 16 chr9 42901970 42902663 -99368781 + L1MC2 LINE L1 5616 6328 -16 2145 112 0 7 chr9 42902663 42902982 -99368462 - AluY SINE Alu 0 311 1 3314 177 40 16 chr9 42902982 42902995 -99368449 + L1MC2 LINE L1 6328 6339 -5 993 163 0 0 chr9 42902995 42903142 -99368302 - AluJb SINE Alu -29 283 137 1365 206 23 5 chr9 42903147 42903462 -99367982 + L1MC/D LINE L1 5370 5629 -715 40 0 0 0 chr9 42903462 42903502 -99367942 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr9 42903681 42903704 -99367740 + AT_rich Low_complexity Low_complexity 1 23 0 866 222 14 32 chr9 42903977 42904193 -99367251 + AluSx SINE Alu 1 212 -100 235 182 0 0 chr9 42904202 42904246 -99367198 + Charlie1 DNA MER1_type 2718 2761 0 499 203 24 24 chr9 42904254 42904377 -99367067 - L2 LINE L2 -4 3309 3187 1040 122 0 0 chr9 42904415 42904554 -99366890 + AluSq/x SINE Alu 3 141 -171 2203 93 0 45 chr9 42904554 42904867 -99366577 + AluSx SINE Alu 1 299 -13 682 158 8 23 chr9 42905006 42905177 -99366267 - AluSp/q SINE Alu 0 313 176 2075 118 0 0 chr9 42905233 42905512 -99365932 + AluSg SINE Alu 29 307 -3 228 323 77 8 chr9 42905565 42905695 -99365749 + HAL1 LINE L1 2219 2357 -150 2290 214 117 8 chr9 42905900 42906420 -99365024 - MER77 LTR ERV1 -28 577 1 233 308 15 0 chr9 42906436 42906501 -99364943 + L1MC4 LINE L1 5511 5576 -2232 1843 176 3 7 chr9 42906532 42906834 -99364610 - AluJb SINE Alu -11 301 1 1901 156 10 3 chr9 42906867 42907175 -99364269 + AluSx SINE Alu 1 310 -2 1811 182 136 43 chr9 42907178 42907463 -99363981 - MER106B DNA MER1_type -527 532 275 1769 163 10 7 chr9 42907463 42907758 -99363686 - AluSx SINE Alu -16 296 1 1811 182 136 43 chr9 42907758 42907855 -99363589 - MER106B DNA MER1_type -784 275 188 2177 134 0 0 chr9 42907855 42908154 -99363290 + AluSx SINE Alu 1 299 -13 1811 182 136 43 chr9 42908154 42908254 -99363190 - MER106B DNA MER1_type -871 188 4 2173 130 0 0 chr9 42908256 42908555 -99362889 + AluSx SINE Alu 1 299 -13 1020 221 19 102 chr9 42908571 42908714 -99362730 + L1MC4 LINE L1 6646 6799 -1243 729 150 0 57 chr9 42908714 42908854 -99362590 - FLAM_C SINE Alu -1 132 1 1020 221 19 102 chr9 42908854 42909072 -99362372 + L1MC4 LINE L1 6799 6977 -1065 2077 130 7 3 chr9 42909072 42909371 -99362073 - AluSq SINE Alu -12 301 2 1289 102 5 88 chr9 42909709 42909950 -99361494 - AluSp SINE Alu 0 313 100 2079 131 0 3 chr9 42909950 42910247 -99361197 - AluSg SINE Alu -14 296 1 1807 149 7 24 chr9 42910255 42910544 -99360900 - AluSg SINE Alu -24 286 3 274 221 0 39 chr9 42910599 42910676 -99360768 - MER89 LTR ERV1 0 559 486 2112 237 9 14 chr9 42910679 42910805 -99360639 - L1P LINE L1 -858 5288 5163 1835 114 19 8 chr9 42910805 42911068 -99360376 - AluSg SINE Alu -5 305 40 2112 237 9 14 chr9 42911068 42911503 -99359941 - L1P LINE L1 -983 5163 4730 2345 156 19 12 chr9 42911513 42911931 -99359513 + L1PA15 LINE L1 5745 6165 0 2203 123 3 3 chr9 42912003 42912312 -99359132 + AluSg1 SINE Alu 1 309 0 2244 104 0 13 chr9 42912456 42912765 -99358679 + AluY SINE Alu 1 305 -6 2148 196 19 5 chr9 42913012 42913540 -99357904 - MER77 LTR ERV1 -28 577 2 1811 177 3 0 chr9 42913660 42913954 -99357490 - AluJb SINE Alu -17 295 1 252 188 47 0 chr9 42913955 42913987 -99357457 + (TA)n Simple_repeat Simple_repeat 1 30 -396 1774 182 3 0 chr9 42913987 42914284 -99357160 + AluSx SINE Alu 1 298 -14 252 188 47 0 chr9 42914284 42914362 -99357082 + (TA)n Simple_repeat Simple_repeat 30 426 0 1724 166 23 10 chr9 42914638 42914946 -99356498 - MER44D DNA MER2_type -1 604 421 1851 182 0 0 chr9 42914946 42915368 -99356076 - AluSx SINE Alu 0 425 4 294 276 52 15 chr9 42915412 42915546 -99355898 + HAL1b LINE L1 1205 1343 -5 603 189 38 0 chr9 42915675 42915781 -99355663 + AluSq/x SINE Alu 2 111 -201 849 127 22 0 chr9 42915810 42915944 -99355500 - AluSg/x SINE Alu -20 292 156 231 280 77 50 chr9 42915976 42916158 -99355286 + L1ME3A LINE L1 5970 6156 -14 539 208 169 65 chr9 42917563 42917871 -99353573 - LTR16A1 LTR ERVL 0 457 118 381 240 187 18 chr9 42918025 42918250 -99353194 + L2 LINE L2 59 321 -2993 674 97 52 37 chr9 42918250 42918384 -99353060 + MER4B LTR ERV1 1 136 -474 799 191 7 0 chr9 42919758 42919910 -99351534 + L1 LINE L1 4144 4296 -1850 363 181 0 0 chr9 42919910 42919981 -99351463 + L1MA5A LINE L1 6226 6297 0 25 31 0 0 chr9 42920054 42920086 -99351358 + AT_rich Low_complexity Low_complexity 1 32 0 2421 65 0 3 chr9 42920115 42920409 -99351035 + AluY SINE Alu 1 293 -18 2312 92 0 3 chr9 42920770 42921063 -99350381 - AluSc SINE Alu -17 292 1 23 0 0 0 chr9 42921201 42921224 -99350220 + AT_rich Low_complexity Low_complexity 1 23 0 2226 51 0 0 chr9 42921501 42921795 -99349649 - AluY SINE Alu 0 321 28 431 88 0 0 chr9 42921742 42921799 -99349645 - AluY SINE Alu -231 80 24 830 258 41 54 chr9 42922314 42922766 -99348678 + MLT1C LTR MaLR 2 466 -1 191 139 28 0 chr9 42922767 42922803 -99348641 - L2 LINE L2 -31 3241 3205 274 308 30 30 chr9 42922892 42923025 -99348419 - L2 LINE L2 -4 3309 3177 2230 115 0 0 chr9 42923486 42923782 -99347662 + AluSq SINE Alu 1 296 -17 342 205 248 31 chr9 42925323 42925484 -99345960 + L2 LINE L2 3118 3313 0 2736 16 0 19 chr9 42925716 42926030 -99345414 - AluYa5 SINE Alu -3 308 1 317 285 165 45 chr9 42926993 42927193 -99344251 - MIR SINE MIR -19 243 20 726 320 62 49 chr9 42927453 42927841 -99343603 + L1MB2 LINE L1 413 805 -5498 261 0 0 0 chr9 42928009 42928038 -99343406 + (T)n Simple_repeat Simple_repeat 1 29 0 4941 227 77 73 chr9 42928283 42928601 -99342843 + L1MB2 LINE L1 773 1088 -5319 2237 125 0 22 chr9 42928601 42928921 -99342523 + AluSq SINE Alu 1 313 0 2360 97 0 3 chr9 42928922 42929232 -99342212 + AluY SINE Alu 1 309 -2 4941 227 77 73 chr9 42929232 42931169 -99340275 + L1MB2 LINE L1 1088 3016 -3391 1409 128 0 10 chr9 42931169 42931372 -99340072 - AluY SINE Alu -22 289 89 4941 227 77 73 chr9 42931372 42931602 -99339842 + L1MB2 LINE L1 3016 3244 -3163 2416 93 0 3 chr9 42931602 42931913 -99339531 + AluY SINE Alu 1 310 -1 4941 227 77 73 chr9 42931913 42932168 -99339276 + L1MB2 LINE L1 3244 3497 -2910 2429 82 0 0 chr9 42932168 42932474 -99338970 + AluY SINE Alu 1 306 -5 4941 227 77 73 chr9 42932474 42933237 -99338207 + L1MB2 LINE L1 3497 4256 -2151 1488 97 97 0 chr9 42933237 42933474 -99337970 - L1MA8 LINE L1 0 6291 6032 4941 227 77 73 chr9 42933474 42933672 -99337772 + L1MB2 LINE L1 4256 4452 -1955 2309 60 21 0 chr9 42933672 42933956 -99337488 + AluY SINE Alu 1 290 -21 4941 227 77 73 chr9 42933956 42935902 -99335542 + L1MB2 LINE L1 4452 6406 -1 1825 191 129 12 chr9 42935951 42936369 -99335075 + MLT1C LTR MaLR 1 467 0 1850 102 4 23 chr9 42937564 42937820 -99333624 + AluSq SINE Alu 1 251 -62 1706 181 0 26 chr9 42938337 42938641 -99332803 + AluJb SINE Alu 1 296 -16 247 283 182 75 chr9 42938902 42939061 -99332383 - MER5A DNA MER1_type 0 178 3 1321 225 112 66 chr9 42939422 42939879 -99331565 + MLT2F LTR ERVL 186 663 0 806 194 0 0 chr9 42939938 42940062 -99331382 + FLAM_C SINE Alu 2 125 -18 3243 232 67 26 chr9 42940068 42941286 -99330158 + L1MEc LINE L1 2037 3268 -2947 2190 116 3 0 chr9 42942094 42942387 -99329057 + AluSx SINE Alu 1 294 -18 288 313 62 51 chr9 42942599 42942713 -99328731 - MER5B DNA MER1_type 0 178 60 2013 130 3 0 chr9 42942713 42943005 -99328439 - AluSx SINE Alu -19 293 1 288 313 62 51 chr9 42943005 42943066 -99328378 - MER5B DNA MER1_type -118 60 1 228 191 79 63 chr9 42943436 42943499 -99327945 - LTR33A LTR ERVL 0 523 460 2374 61 0 0 chr9 42944979 42945286 -99326158 + AluY SINE Alu 1 307 0 611 307 17 6 chr9 42946247 42946426 -99325018 + MLT1J LTR MaLR 10 190 -321 15162 193 18 12 chr9 42946435 42951401 -99320043 + L1PA13 LINE L1 1 5015 -1782 4404 112 13 5 chr9 42951401 42952026 -99319418 + L1PA13 LINE L1 6176 6807 -7 2506 49 3 16 chr9 42952026 42952333 -99319111 + AluY SINE Alu 1 303 -8 210 364 13 0 chr9 42952341 42952418 -99319026 - MIR SINE MIR -151 111 34 22 35 0 0 chr9 42953527 42953556 -99317888 + AT_rich Low_complexity Low_complexity 1 29 0 1508 124 5 0 chr9 42955160 42955378 -99316066 + AluSg/x SINE Alu 89 307 -5 1600 202 6 21 chr9 42955388 42955719 -99315725 + L1PB4 LINE L1 5831 6156 0 1825 203 74 37 chr9 42956645 42957132 -99314312 + MLT1D LTR MaLR 1 505 0 333 0 0 0 chr9 42957924 42957961 -99313483 + (TG)n Simple_repeat Simple_repeat 1 37 0 357 322 8 17 chr9 42958016 42958134 -99313310 + L2 LINE L2 2906 3022 -291 1907 204 104 7 chr9 42958169 42958200 -99313244 - MLT2B2 LTR ERVL -11 504 477 363 44 0 0 chr9 42958200 42958245 -99313199 + (TG)n Simple_repeat Simple_repeat 2 46 0 1907 204 104 7 chr9 42958245 42958663 -99312781 - MLT2B2 LTR ERVL -38 477 11 455 281 48 0 chr9 42958679 42958825 -99312619 + L2 LINE L2 3161 3313 0 328 50 0 0 chr9 42958828 42958868 -99312576 - L1P LINE L1 -4370 1776 1737 3490 19 0 0 chr9 42958869 42959245 -99312199 + L1PA2 LINE L1 5780 6155 0 2142 85 0 0 chr9 42959273 42959544 -99311900 - AluY SINE Alu -3 308 38 2406 190 27 40 chr9 42959845 42960323 -99311121 + MLT2B1 LTR ERVL 1 472 -48 1416 133 9 14 chr9 42961812 42962030 -99309414 + L1PB3 LINE L1 5933 6149 -5 2245 174 16 5 chr9 42962448 42962834 -99308610 + MLT1B LTR MaLR 1 390 0 2401 92 0 0 chr9 42962858 42963162 -99308282 + AluY SINE Alu 1 304 -7 1135 168 0 0 chr9 42963162 42963341 -99308103 + AluSg/x SINE Alu 132 310 0 3699 59 44 8 chr9 42963625 42964102 -99307342 - L1PA8 LINE L1 -1 6171 5678 1361 225 43 3 chr9 42964103 42964405 -99307039 + MER65C LTR ERV1 36 349 -112 1002 146 20 0 chr9 42964409 42964560 -99306884 - LTR12 LTR ERV1 -232 482 329 * 6232 141 1 9 chr9 42964557 42965573 -99305871 - HERV9 LTR ERV1 -7235 1164 72 609 119 13 102 chr9 42965573 42965696 -99305748 - LTR12 LTR ERV1 0 714 582 2355 86 3 32 chr9 42965696 42966011 -99305433 - AluY SINE Alu -5 306 1 609 119 13 102 chr9 42966011 42966037 -99305407 - LTR12 LTR ERV1 -132 582 301 313 304 16 0 chr9 42966037 42966162 -99305282 - LTR30 LTR ERV1 -79 643 517 1212 118 5 62 chr9 42966162 42966373 -99305071 - LTR12 LTR ERV1 -463 251 53 232 250 0 0 chr9 42966373 42966425 -99305019 - LTR30 LTR ERV1 -670 52 1 440 236 0 0 chr9 42966425 42966514 -99304930 + LTR51 LTR ERV1 583 671 0 276 244 32 81 chr9 42967822 42967945 -99303499 + MIR SINE MIR 141 257 -5 432 285 111 43 chr9 42968182 42968389 -99303055 - MIR SINE MIR -35 227 7 325 304 32 14 chr9 42971178 42971322 -99300122 + MIR SINE MIR 2 157 -66 237 269 86 11 chr9 42971440 42971533 -99299911 + MIR3 SINE MIR 81 165 -43 2162 133 57 31 chr9 42971830 42972183 -99299261 + THE1B LTR MaLR 3 364 0 216 67 0 0 chr9 42972541 42972571 -99298873 + (TG)n Simple_repeat Simple_repeat 1 30 0 2516 53 0 3 chr9 42973176 42973478 -99297966 - AluY SINE Alu -10 301 1 243 229 98 35 chr9 42974216 42974348 -99297096 - L1ME LINE L1 -5901 169 30 2505 73 0 6 chr9 42974532 42974877 -99296567 + AluY SINE Alu 1 343 0 2030 208 50 15 chr9 42974897 42975217 -99296227 - L1MB5 LINE L1 -6 6168 5821 1892 154 0 13 chr9 42975217 42975550 -99295894 - AluSx SINE Alu 0 312 1 2030 208 50 15 chr9 42975550 42975695 -99295749 - L1MB5 LINE L1 -353 5821 5683 2020 152 0 3 chr9 42975800 42976109 -99295335 + AluSx SINE Alu 1 308 -4 554 288 71 4 chr9 42976646 42976872 -99294572 - MIR SINE MIR -10 252 12 24 0 0 0 chr9 42977424 42977448 -99293996 + AT_rich Low_complexity Low_complexity 1 24 0 327 288 124 13 chr9 42977744 42977897 -99293547 - MIR SINE MIR -36 226 57 182 219 0 0 chr9 42978112 42978144 -99293300 - L2 LINE L2 -86 3186 3155 1046 268 99 77 chr9 42978207 42978883 -99292561 - MER21B LTR ERV1 -149 714 24 3573 230 68 29 chr9 42979118 42979998 -99291446 - MER21B-int LTR ERV1 -42 4149 3147 2161 108 0 14 chr9 42979998 42980177 -99291267 - AluSp SINE Alu 0 312 137 2291 86 0 10 chr9 42980177 42980479 -99290965 - AluY SINE Alu -12 299 1 2161 108 0 14 chr9 42980479 42980615 -99290829 - AluSp SINE Alu -175 137 1 3573 230 68 29 chr9 42980615 42981222 -99290222 - MER21B-int LTR ERV1 -1044 3147 2565 636 283 36 43 chr9 42981230 42981303 -99290141 - MER21B-int LTR ERV1 -1907 2284 2212 1096 189 45 139 chr9 42981303 42981456 -99289988 + MLT1A1 LTR MaLR 1 167 -198 2104 103 24 3 chr9 42981456 42981747 -99289697 + AluY SINE Alu 6 302 -9 1096 189 45 139 chr9 42981747 42981996 -99289448 + MLT1A1 LTR MaLR 167 365 0 636 283 36 43 chr9 42981996 42982198 -99289246 - MER21B-int LTR ERV1 -1979 2212 2011 * 1592 256 41 62 chr9 42982192 42982808 -99288636 - MER4B-int LTR ERV1 -2294 4464 3862 1734 172 0 0 chr9 42982931 42983239 -99288205 + L1P5 LINE L1 4758 5065 -1081 2514 67 0 13 chr9 42983241 42983554 -99287890 + AluY SINE Alu 1 309 -2 828 173 0 0 chr9 42983555 42983694 -99287750 + L1P5 LINE L1 5597 5735 -421 887 259 5 0 chr9 42984754 42984939 -99286505 + MER5A DNA MER1_type 4 189 0 1313 129 39 28 chr9 42985411 42985666 -99285778 - L1MA8 LINE L1 -11 6280 6023 2361 100 0 13 chr9 42985666 42985976 -99285468 - AluY SINE Alu -5 306 1 1105 81 7 0 chr9 42985976 42986112 -99285332 - AluSp SINE Alu -176 137 1 1833 248 58 9 chr9 42986112 42986718 -99284726 - MER4B-int LTR ERV1 -953 3238 2565 612 286 36 43 chr9 42986726 42986799 -99284645 - MER4B-int LTR ERV1 -1907 2284 2212 1096 189 45 139 chr9 42986799 42986952 -99284492 + MLT1A1 LTR MaLR 1 167 -198 2112 103 24 3 chr9 42986952 42987243 -99284201 + AluY SINE Alu 6 302 -9 1096 189 45 139 chr9 42987243 42987492 -99283952 + MLT1A1 LTR MaLR 167 365 0 612 286 36 43 chr9 42987492 42987694 -99283750 - MER4B-int LTR ERV1 -1979 2212 2011 * 4056 239 51 84 chr9 42987688 42989121 -99282323 - MER4B-int LTR ERV1 -2294 4464 3079 2388 152 15 2 chr9 42989498 42989893 -99281551 + MER57A LTR ERV1 1 400 -3 2257 77 0 14 chr9 42990718 42991037 -99280407 + AluY SINE Alu 1 315 0 291 122 0 0 chr9 42991656 42991705 -99279739 + (GA)n Simple_repeat Simple_repeat 2 50 0 2377 97 0 13 chr9 42994022 42994332 -99277112 + AluY SINE Alu 1 306 -5 1358 122 39 28 chr9 42994332 42994587 -99276857 + L1MA8 LINE L1 6023 6280 -11 881 259 5 0 chr9 42995059 42995244 -99276200 - MER5A DNA MER1_type 0 189 4 800 180 0 0 chr9 42996304 42996443 -99275001 - L1P5 LINE L1 -421 5735 5597 2464 77 0 13 chr9 42996444 42996757 -99274687 - AluY SINE Alu -2 309 1 1597 197 0 3 chr9 42996759 42997068 -99274376 - L1P5 LINE L1 -1081 5065 4758 502 174 0 0 chr9 42997067 42997159 -99274285 + L1PA16 LINE L1 5736 5827 -339 * 436 257 21 14 chr9 42997163 42997303 -99274141 + AluYa5 SINE Alu 2 142 -169 232 296 82 0 chr9 42997609 42997707 -99273737 - MER5B DNA MER1_type 0 178 73 2060 127 3 0 chr9 42997723 42998015 -99273429 - AluSx SINE Alu -19 293 1 2211 100 4 0 chr9 42999989 43000310 -99271134 + AluY SINE Alu 1 322 0 2108 96 27 14 chr9 43001210 43001502 -99269942 - AluY SINE Alu -13 298 3 1638 83 0 0 chr9 43001514 43001718 -99269726 - AluY SINE Alu -107 204 1 2257 100 10 0 chr9 43002333 43002623 -99268821 + AluSp SINE Alu 1 293 -20 509 80 13 0 chr9 43002623 43002698 -99268746 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 588 257 29 0 chr9 43002730 43002901 -99268543 + MER5B DNA MER1_type 3 178 0 746 203 62 82 chr9 43003946 43004343 -99267101 - MER4C LTR ERV1 0 699 149 2934 137 98 84 chr9 43004343 43004998 -99266446 - MER4A LTR ERV1 0 664 1 198 371 14 0 chr9 43005867 43005937 -99265507 + MIR SINE MIR 5 75 -187 356 351 70 18 chr9 43006975 43007203 -99264241 + MIR SINE MIR 17 256 -6 198 194 45 0 chr9 43007727 43007794 -99263650 + CT-rich Low_complexity Low_complexity 3 72 0 1505 181 14 3 chr9 43008618 43008900 -99262544 + MER49 LTR ERV1 1 285 -638 1199 246 39 21 chr9 43008967 43009297 -99262147 + MER4D LTR ERV1 568 903 0 2159 119 7 0 chr9 43009685 43009978 -99261466 - AluSc SINE Alu -14 295 1 1613 198 101 17 chr9 43010931 43011345 -99260099 + LTR48 LTR ERV1 294 742 -45 595 256 72 48 chr9 43012194 43012444 -99259000 - MIR SINE MIR -5 257 2 1351 242 87 3 chr9 43012494 43012874 -99258570 - L1M4 LINE L1 -903 5243 4832 4236 142 81 68 chr9 43012914 43012965 -99258479 - MER4D LTR ERV1 0 903 854 3643 107 14 4 chr9 43012965 43013471 -99257973 + MER9 LTR ERVK 1 511 0 4236 142 81 68 chr9 43013471 43013968 -99257476 - MER4D LTR ERV1 -49 854 337 2012 129 38 0 chr9 43013968 43014255 -99257189 - AluSx SINE Alu -14 298 1 4236 142 81 68 chr9 43014255 43014597 -99256847 - MER4D LTR ERV1 -566 337 1 31 0 0 0 chr9 43015370 43015401 -99256043 + AT_rich Low_complexity Low_complexity 1 31 0 695 204 52 12 chr9 43015489 43015661 -99255783 - MER96B DNA MER1_type? -238 179 1 2315 96 0 17 chr9 43015700 43016002 -99255442 + AluY SINE Alu 1 297 -14 225 0 0 0 chr9 43016176 43016201 -99255243 + (T)n Simple_repeat Simple_repeat 1 25 0 379 316 94 0 chr9 43016276 43016447 -99254997 - MIR SINE MIR -10 252 66 2011 132 0 46 chr9 43016617 43016755 -99254689 - AluSx SINE Alu -2 310 167 2644 98 125 5 chr9 43016755 43017155 -99254289 + LTR7 LTR ERV1 1 448 -2 2011 132 0 46 chr9 43017155 43017341 -99254103 - AluSx SINE Alu -145 167 1 654 267 174 15 chr9 43018487 43018884 -99252560 + L2 LINE L2 2380 2839 -475 212 267 0 17 chr9 43018986 43019046 -99252398 + (CATA)n Simple_repeat Simple_repeat 2 60 0 294 237 72 31 chr9 43019919 43020016 -99251428 + LTR48B LTR ERV1 1 101 -543 * 2231 194 38 7 chr9 43019984 43020428 -99251016 + MER39 LTR ERV1 250 707 0 1202 209 75 88 chr9 43020553 43020847 -99250597 + MER39 LTR ERV1 250 538 -169 2437 57 0 0 chr9 43020847 43021157 -99250287 - AluY SINE Alu 0 310 1 1202 209 75 88 chr9 43021157 43021325 -99250119 + MER39 LTR ERV1 538 707 0 228 67 0 0 chr9 43022492 43022522 -99248922 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 503 15 0 15 chr9 43022706 43022771 -99248673 + (CA)n Simple_repeat Simple_repeat 2 65 0 1481 200 43 145 chr9 43022797 43023162 -99248282 - LTR38B LTR ERV1 0 591 347 2688 36 0 0 chr9 43023162 43023463 -99247981 - AluY SINE Alu -10 301 1 1481 200 43 145 chr9 43023463 43023778 -99247666 - LTR38B LTR ERV1 -244 347 1 206 216 20 39 chr9 43024067 43024118 -99247326 + L2 LINE L2 3250 3299 -14 2415 46 0 26 chr9 43024415 43024718 -99246726 - AluY SINE Alu -16 295 1 2959 234 40 76 chr9 43025156 43025825 -99245619 + MER21-int LTR ERV1 3172 3864 -327 2247 98 3 3 chr9 43025825 43026132 -99245312 + AluY SINE Alu 1 307 -4 2959 234 40 76 chr9 43026132 43026230 -99245214 + MER21-int LTR ERV1 3864 3964 -227 2188 204 40 73 chr9 43026230 43026807 -99244637 + MER74A LTR ERVL 1 558 0 2067 134 0 6 chr9 43026816 43027130 -99244314 + AluSx SINE Alu 1 312 0 2959 234 40 76 chr9 43027130 43027182 -99244262 + MER21-int LTR ERV1 3972 4024 -167 2585 118 75 5 chr9 43027182 43027598 -99243846 - LTR56 LTR ERV1 0 445 1 2959 234 40 76 chr9 43027598 43027710 -99243734 + MER21-int LTR ERV1 4024 4081 -110 366 269 69 63 chr9 43027892 43028067 -99243377 - MIR SINE MIR -41 221 46 2388 70 0 0 chr9 43028165 43028452 -99242992 - AluY SINE Alu -3 308 22 207 139 0 0 chr9 43028476 43028512 -99242932 + (TG)n Simple_repeat Simple_repeat 2 37 0 859 312 41 35 chr9 43028844 43029354 -99242090 + L1ME3A LINE L1 5454 5966 -204 1919 131 4 0 chr9 43029580 43029854 -99241590 + AluSg SINE Alu 1 275 -35 330 26 0 0 chr9 43029857 43029896 -99241548 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2267 110 43 48 chr9 43030874 43031266 -99240178 - L1MA4A LINE L1 -1 6302 5913 2470 65 3 3 chr9 43032778 43033085 -99238359 + AluY SINE Alu 1 307 -4 540 178 0 19 chr9 43033304 43033411 -99238033 - MER53 DNA DNA -84 105 1 2478 77 0 3 chr9 43034141 43034453 -99236991 + AluY SINE Alu 1 311 0 227 340 46 56 chr9 43034541 43034738 -99236706 + L3 LINE CR1 1381 1575 -2 2448 86 3 3 chr9 43035301 43035614 -99235830 - AluSq SINE Alu 0 313 1 387 229 34 42 chr9 43035972 43036090 -99235354 - MER20 DNA MER1_type -4 215 99 2228 79 14 3 chr9 43036220 43036512 -99234932 + AluSc SINE Alu 1 295 -14 1973 185 117 76 chr9 43036889 43037387 -99234057 - MLT2B1 LTR ERVL 0 520 3 2838 16 0 0 chr9 43037550 43037857 -99233587 + AluYb8 SINE Alu 1 307 -11 1058 240 132 17 chr9 43038515 43038931 -99232513 - MLT1C LTR MaLR 0 467 4 1422 221 45 40 chr9 43039521 43039920 -99231524 - MLT1C LTR MaLR -8 459 59 410 207 76 83 chr9 43040692 43040837 -99230607 + MLT1H LTR MaLR 404 547 -2 266 191 19 76 chr9 43041545 43041650 -99229794 + LTR41 LTR ERVL 662 760 -13 772 180 64 0 chr9 43042174 43042346 -99229098 - L1MA7 LINE L1 -2 6289 6107 225 245 0 0 chr9 43042469 43042518 -99228926 + L2 LINE L2 3264 3312 -1 271 316 209 11 chr9 43042667 43042844 -99228600 - MIR SINE MIR 0 262 51 2098 107 24 0 chr9 43042859 43043150 -99228294 + AluSq SINE Alu 1 298 -15 430 282 43 19 chr9 43043737 43043946 -99227498 + L1ME4a LINE L1 5730 5943 -178 270 0 0 0 chr9 43044124 43044154 -99227290 + (CA)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr9 43045661 43045693 -99225751 + AT_rich Low_complexity Low_complexity 1 32 0 339 25 0 0 chr9 43045892 43045932 -99225512 + (TG)n Simple_repeat Simple_repeat 1 40 0 686 272 72 72 chr9 43045936 43046351 -99225093 - L2 LINE L2 -49 3264 2850 224 241 0 0 chr9 43047437 43047491 -99223953 + (TA)n Simple_repeat Simple_repeat 1 54 0 2092 90 0 48 chr9 43048028 43048338 -99223106 - AluSx SINE Alu -17 295 1 2517 49 3 0 chr9 43048613 43048917 -99222527 - AluY SINE Alu -6 305 1 2188 125 0 0 chr9 43049686 43049989 -99221455 + AluSq SINE Alu 1 303 -10 21 71 0 0 chr9 43049989 43050031 -99221413 + AT_rich Low_complexity Low_complexity 1 42 0 2417 176 58 0 chr9 43050503 43050930 -99220514 - MER70A LTR ERVL -20 452 1 2469 60 17 0 chr9 43051908 43052210 -99219234 - AluSp SINE Alu -6 307 1 2071 164 53 43 chr9 43052945 43053189 -99218255 + L1MDa LINE L1 1846 2086 -4454 2150 79 18 4 chr9 43053189 43053491 -99217953 - AluY SINE Alu 0 306 1 2071 164 53 43 chr9 43053491 43053831 -99217613 + L1MDa LINE L1 2086 2558 -3982 584 256 248 0 chr9 43054003 43054249 -99217195 + L1MD2 LINE L1 6043 6349 -10 329 304 66 33 chr9 43054293 43054474 -99216970 + L1MEc LINE L1 1630 1816 -4580 1534 207 21 24 chr9 43054507 43054889 -99216555 + L1MEc LINE L1 2521 2901 -3314 3993 162 18 34 chr9 43054952 43055740 -99215704 - LTR1 LTR ERV1 0 785 11 423 214 0 48 chr9 43055752 43055878 -99215566 + Charlie5 DNA MER1_type 2416 2535 -77 1950 216 54 14 chr9 43055879 43056473 -99214971 + L1MEc LINE L1 2896 3513 -2702 2221 151 31 28 chr9 43056518 43056622 -99214822 + L1M4c LINE L1 1 103 -6281 2156 100 3 7 chr9 43056622 43056922 -99214522 - AluY SINE Alu -12 299 1 2221 151 31 28 chr9 43056922 43057209 -99214235 + L1M4c LINE L1 103 393 -5991 255 152 22 0 chr9 43057195 43057241 -99214203 + L1MB4 LINE L1 5237 5283 -863 * 4069 187 19 56 chr9 43057277 43057308 -99214136 + L1MB4 LINE L1 5258 5289 -891 2165 146 128 13 chr9 43057308 43057692 -99213752 + MSTA LTR MaLR 1 428 0 4069 187 19 56 chr9 43057692 43058476 -99212968 + L1MB4 LINE L1 5289 6101 -79 2204 72 4 4 chr9 43058476 43058754 -99212690 + AluY SINE Alu 1 278 -33 342 0 0 0 chr9 43058759 43058797 -99212647 + (TA)n Simple_repeat Simple_repeat 2 39 0 4069 187 19 56 chr9 43058797 43058933 -99212511 + L1MB4 LINE L1 6105 6180 0 1162 206 23 68 chr9 43059108 43059418 -99212026 + MLT2B1 LTR ERVL 1 296 -118 27 29 0 0 chr9 43059488 43059522 -99211922 + AT_rich Low_complexity Low_complexity 1 34 0 468 296 106 12 chr9 43059640 43060296 -99211148 + L1MB7 LINE L1 2131 2928 -3218 3819 216 55 53 chr9 43060412 43060653 -99210791 + L1MB7 LINE L1 4146 4385 -1799 1809 91 95 0 chr9 43060653 43060905 -99210539 + L1PB3 LINE L1 5876 6151 -3 3819 216 55 53 chr9 43060905 43061072 -99210372 + L1MB7 LINE L1 4385 4550 -1634 207 0 0 0 chr9 43061072 43061095 -99210349 + (TTG)n Simple_repeat Simple_repeat 2 24 0 885 104 0 24 chr9 43061097 43061222 -99210222 - AluSp/q SINE Alu -18 295 174 3819 216 55 53 chr9 43061222 43062309 -99209135 + L1MB7 LINE L1 4550 5668 -516 2264 90 7 3 chr9 43062309 43062599 -99208845 + AluSg SINE Alu 1 291 -19 3819 216 55 53 chr9 43062599 43063117 -99208327 + L1MB7 LINE L1 5668 6184 0 572 259 24 0 chr9 43063281 43063447 -99207997 + L1M4 LINE L1 4222 4391 -1755 658 135 110 1 chr9 43063447 43063592 -99207852 + L1PB3 LINE L1 5876 6043 -125 2470 55 0 7 chr9 43063611 43063918 -99207526 - AluY SINE Alu -6 305 1 433 278 83 33 chr9 43064224 43064404 -99207040 + HAL1 LINE L1 8 196 -2311 1735 105 4 0 chr9 43064840 43065068 -99206376 - AluSc SINE Alu -14 295 67 291 281 48 68 chr9 43065070 43065216 -99206228 + LTR16C LTR ERVL 347 489 -2 296 309 27 37 chr9 43065269 43065457 -99205987 + HAL1 LINE L1 2031 2216 -291 3318 158 27 9 chr9 43065473 43066037 -99205407 + LTR69 LTR ERVL 8 581 -7 2287 117 0 0 chr9 43066288 43066729 -99204715 + AluSc SINE Alu 1 441 0 3524 172 5 4 chr9 43067096 43067649 -99203795 - MER41D LTR ERV1 -2 555 2 24 0 0 0 chr9 43067846 43067870 -99203574 + AT_rich Low_complexity Low_complexity 1 24 0 2083 110 37 3 chr9 43068263 43068384 -99203060 + AluSc SINE Alu 1 116 -193 234 0 0 0 chr9 43068384 43068410 -99203034 + (CA)n Simple_repeat Simple_repeat 2 27 0 2083 110 37 3 chr9 43068410 43068587 -99202857 + AluSc SINE Alu 116 309 0 205 261 0 0 chr9 43068671 43068717 -99202727 + L3 LINE CR1 1426 1471 -106 2421 60 3 13 chr9 43068741 43069042 -99202402 + AluY SINE Alu 1 298 -13 1003 281 115 17 chr9 43070052 43070469 -99200975 - MLT1E2 LTR MaLR -58 568 111 2639 55 0 0 chr9 43070797 43071108 -99200336 + AluY SINE Alu 1 311 0 2111 79 52 24 chr9 43071409 43071700 -99199744 + AluY SINE Alu 1 299 -12 749 255 85 88 chr9 43071728 43072009 -99199435 + MLT1I LTR MaLR 54 335 -74 2379 99 3 0 chr9 43072009 43072311 -99199133 - AluSg SINE Alu -7 303 1 749 255 85 88 chr9 43072311 43072382 -99199062 + MLT1I LTR MaLR 335 405 -4 1831 188 65 31 chr9 43072699 43073114 -99198330 + MLT2B1 LTR ERVL 1 429 -91 3168 182 3 46 chr9 43073201 43073797 -99197647 + ERVL LTR ERVL 4814 5383 -381 2501 68 0 7 chr9 43073797 43074107 -99197337 - AluY SINE Alu -3 308 1 3168 182 3 46 chr9 43074107 43074142 -99197302 + ERVL LTR ERVL 5383 5418 -346 327 85 0 0 chr9 43074146 43074193 -99197251 + (TG)n Simple_repeat Simple_repeat 2 48 0 311 342 83 22 chr9 43074348 43074576 -99196868 - L2 LINE L2 -2919 395 154 244 308 131 0 chr9 43075549 43075679 -99195765 + MIR3 SINE MIR 56 202 -6 724 150 176 13 chr9 43076574 43076727 -99194717 + L1M3e LINE L1 466 643 -6846 753 272 15 75 chr9 43076759 43077171 -99194273 + L1M3e LINE L1 1173 1559 -5930 2172 262 82 19 chr9 43077177 43077968 -99193476 + L1M3e LINE L1 2565 3405 -4160 1620 83 0 0 chr9 43078238 43078442 -99193002 + AluY SINE Alu 1 204 -107 2090 96 27 14 chr9 43078454 43078746 -99192698 + AluY SINE Alu 3 298 -13 2152 104 4 0 chr9 43079645 43079970 -99191474 - AluY SINE Alu 0 326 1 446 261 183 7 chr9 43081574 43081727 -99189717 - MER5A DNA MER1_type 0 189 10 403 313 62 91 chr9 43081833 43082039 -99189405 + L2 LINE L2 2323 2513 -801 2509 72 0 0 chr9 43082039 43082343 -99189101 + AluSg SINE Alu 1 304 -6 403 313 62 91 chr9 43082343 43082552 -99188892 + L2 LINE L2 2513 2726 -588 205 223 154 69 chr9 43083082 43083212 -99188232 - MIR3 SINE MIR -57 151 11 2299 90 0 22 chr9 43083573 43083884 -99187560 - AluY SINE Alu -7 304 1 1703 238 110 42 chr9 43084241 43084765 -99186679 - LTR48B LTR ERV1 -2 642 70 2561 66 0 0 chr9 43084765 43085069 -99186375 + AluY SINE Alu 1 304 -7 1703 238 110 42 chr9 43085069 43085145 -99186299 - LTR48B LTR ERV1 -574 70 1 234 300 40 40 chr9 43085175 43085325 -99186119 + MLT1K LTR MaLR 426 575 -13 1459 268 78 44 chr9 43085399 43086063 -99185381 - L1MCa LINE L1 -4965 1461 775 840 83 8 8 chr9 43086068 43086189 -99185255 + Alu SINE Alu 174 294 -16 186 43 0 0 chr9 43086234 43086257 -99185187 + (T)n Simple_repeat Simple_repeat 1 23 0 2229 78 0 3 chr9 43086441 43086751 -99184693 - AluY SINE Alu 0 309 1 2835 19 3 0 chr9 43087057 43087374 -99184070 - AluYb8 SINE Alu 0 318 1 6405 164 15 9 chr9 43087397 43088124 -99183320 - L1MC1 LINE L1 -6 6327 5606 2531 46 0 7 chr9 43088124 43088427 -99183017 - AluY SINE Alu -10 301 1 6405 164 15 9 chr9 43088427 43088848 -99182596 - L1MC1 LINE L1 -727 5606 5163 2086 132 3 0 chr9 43088848 43089144 -99182300 - AluSx SINE Alu -15 297 1 6405 164 15 9 chr9 43089144 43089192 -99182252 - L1MC1 LINE L1 -1170 5163 5117 1112 156 0 0 chr9 43089195 43089375 -99182069 - L1MC/D LINE L1 -539 5794 5615 784 276 13 0 chr9 43089370 43089602 -99181842 - L1MC1 LINE L1 -1049 5097 4863 * 392 290 83 7 chr9 43090001 43090146 -99181298 + MIR3 SINE MIR 29 184 -24 2104 98 14 0 chr9 43090500 43090801 -99180643 - AluSx SINE Alu 0 305 1 40 21 0 0 chr9 43091131 43091178 -99180266 + AT_rich Low_complexity Low_complexity 1 47 0 1885 69 0 4 chr9 43092962 43093194 -99178250 - L1PA8 LINE L1 -2 6170 5940 878 172 0 0 chr9 43093374 43093496 -99177948 - FLAM_C SINE Alu -9 124 3 1714 178 7 23 chr9 43093823 43094132 -99177312 - AluJb SINE Alu -6 306 3 1589 226 117 40 chr9 43094466 43094583 -99176861 - LTR40b LTR ERVL 0 462 355 201 26 79 0 chr9 43094583 43094621 -99176823 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2262 98 0 0 chr9 43094628 43094915 -99176529 - AluY SINE Alu -24 287 1 1589 226 117 40 chr9 43094915 43095218 -99176226 - LTR40b LTR ERVL -112 350 1 448 241 29 51 chr9 43095382 43095519 -99175925 + MER5B DNA MER1_type 44 177 -1 5861 114 5 2 chr9 43095965 43097119 -99174325 - L1PA13 LINE L1 0 6814 5647 11739 201 33 13 chr9 43097120 43100390 -99171054 - L1PA13 LINE L1 -2180 4617 1275 183 80 0 0 chr9 43100390 43100415 -99171029 + (CAG)n Simple_repeat Simple_repeat 1 25 0 11739 201 33 13 chr9 43100415 43100521 -99170923 - L1PA13 LINE L1 -5522 1275 1173 248 65 0 0 chr9 43100538 43100569 -99170875 + (T)n Simple_repeat Simple_repeat 1 31 0 5750 159 8 8 chr9 43100671 43101647 -99169797 + L1PA13 LINE L1 3389 4364 -1782 4142 123 16 6 chr9 43101647 43102271 -99169173 + L1PA13 LINE L1 5525 6156 -7 2510 53 3 13 chr9 43102271 43102575 -99168869 + AluY SINE Alu 1 301 -10 22 35 0 0 chr9 43103767 43103796 -99167648 + AT_rich Low_complexity Low_complexity 1 29 0 1494 128 5 0 chr9 43105399 43105617 -99165827 + AluSg/x SINE Alu 87 305 -5 1575 193 6 39 chr9 43105627 43105922 -99165522 + L1PB4 LINE L1 5831 6115 -41 2950 6 0 0 chr9 43105922 43106238 -99165206 + AluYb8 SINE Alu 1 316 -2 1575 193 6 39 chr9 43106238 43106279 -99165165 + L1PB4 LINE L1 6115 6156 0 1819 201 74 39 chr9 43107204 43107692 -99163752 + MLT1D LTR MaLR 1 505 0 297 0 0 0 chr9 43108484 43108517 -99162927 + (TG)n Simple_repeat Simple_repeat 1 33 0 357 322 8 17 chr9 43108572 43108690 -99162754 + L2 LINE L2 2906 3022 -291 1907 204 104 7 chr9 43108725 43108756 -99162688 - MLT2B2 LTR ERVL -11 504 477 309 51 0 0 chr9 43108756 43108795 -99162649 + (TG)n Simple_repeat Simple_repeat 2 40 0 1907 204 104 7 chr9 43108795 43109213 -99162231 - MLT2B2 LTR ERVL -38 477 11 455 281 48 0 chr9 43109229 43109375 -99162069 + L2 LINE L2 3161 3313 0 328 50 0 0 chr9 43109378 43109418 -99162026 - L1P LINE L1 -4370 1776 1737 3461 21 0 0 chr9 43109419 43109795 -99161649 + L1PA2 LINE L1 5780 6155 0 2466 81 0 0 chr9 43109823 43110131 -99161313 - AluY SINE Alu -3 308 1 2954 233 40 76 chr9 43110569 43111238 -99160206 + MER31A-int LTR ERV1 3172 3864 -327 2256 97 3 3 chr9 43111238 43111546 -99159898 + AluY SINE Alu 1 308 -3 2954 233 40 76 chr9 43111546 43111644 -99159800 + MER31A-int LTR ERV1 3864 3964 -227 2206 203 40 73 chr9 43111644 43112221 -99159223 + MER74A LTR ERVL 1 558 0 2079 134 0 6 chr9 43112230 43112544 -99158900 + AluSx SINE Alu 1 312 0 2954 233 40 76 chr9 43112544 43112596 -99158848 + MER31A-int LTR ERV1 3972 4024 -167 2596 118 75 5 chr9 43112596 43113012 -99158432 - LTR56 LTR ERV1 0 445 1 2954 233 40 76 chr9 43113012 43113124 -99158320 + MER31A-int LTR ERV1 4024 4081 -110 379 269 84 18 chr9 43113292 43113459 -99157985 - MIR SINE MIR -24 238 61 2342 77 0 0 chr9 43113580 43113865 -99157579 - AluY SINE Alu -5 306 22 207 139 0 0 chr9 43113889 43113925 -99157519 + (TG)n Simple_repeat Simple_repeat 2 37 0 845 314 41 35 chr9 43114205 43114715 -99156729 + L1ME3A LINE L1 5454 5966 -204 1821 146 4 0 chr9 43114941 43115215 -99156229 + AluSg SINE Alu 1 275 -35 375 23 0 0 chr9 43115218 43115262 -99156182 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 2280 110 43 48 chr9 43116240 43116632 -99154812 - L1MA4A LINE L1 -1 6302 5913 2255 107 0 13 chr9 43117096 43117404 -99154040 - AluSc SINE Alu -5 304 1 2442 130 42 12 chr9 43118154 43118561 -99152883 - MSTB1 LTR MaLR 0 432 14 923 327 118 5 chr9 43118765 43119374 -99152070 - L2 LINE L2 -528 2786 2109 2243 171 28 21 chr9 43120449 43120922 -99150522 + MER31A LTR ERV1 1 476 -9 195 263 12 100 chr9 43121003 43121083 -99150361 - L2 LINE L2 0 3313 3241 606 152 0 0 chr9 43121737 43121829 -99149615 + MER20 DNA MER1_type 1 92 -127 2214 105 0 7 chr9 43123301 43123595 -99147849 + AluY SINE Alu 1 292 -19 23 0 0 0 chr9 43123595 43123618 -99147826 + AT_rich Low_complexity Low_complexity 1 23 0 2115 129 0 23 chr9 43123754 43124064 -99147380 - AluSx SINE Alu -9 303 1 5844 63 1 12 chr9 43124116 43124834 -99146610 + L1PA8 LINE L1 5461 6170 -2 2228 99 0 0 chr9 43124859 43125141 -99146303 - AluSc SINE Alu -23 286 5 2358 91 0 0 chr9 43125158 43125454 -99145990 - AluSx SINE Alu -11 301 6 1122 185 83 29 chr9 43125591 43125867 -99145577 - L1M4 LINE L1 -917 5229 4939 588 165 31 17 chr9 43125861 43126007 -99145437 + L1M4 LINE L1 5227 5380 -766 * 1195 58 0 0 chr9 43126007 43126191 -99145253 + AluY SINE Alu 135 283 -28 4165 186 11 37 chr9 43126208 43126449 -99144995 + L1MA10 LINE L1 5364 5610 -724 2532 36 0 13 chr9 43126449 43126751 -99144693 + AluY SINE Alu 1 298 -13 4165 186 11 37 chr9 43126751 43126941 -99144503 + L1MA10 LINE L1 5610 5803 -531 3999 87 5 69 chr9 43126941 43127582 -99143862 + MER4A LTR ERV1 1 600 0 4165 186 11 37 chr9 43127582 43128105 -99143339 + L1MA10 LINE L1 5803 6295 -39 2212 114 3 13 chr9 43129114 43129429 -99142015 - AluSx SINE Alu 0 312 1 346 224 12 0 chr9 43130273 43130358 -99141086 + MER96 DNA MER1_type? 1 86 -89 1876 58 12 0 chr9 43130889 43131130 -99140314 + L1PA5 LINE L1 5909 6152 -2 213 380 92 6 chr9 43131768 43131931 -99139513 - MIR3 SINE MIR -2 206 30 2075 115 28 3 chr9 43133872 43134193 -99137251 - L1PA16 LINE L1 -10 6156 5828 2289 92 3 10 chr9 43134193 43134497 -99136947 - AluY SINE Alu -9 302 1 640 235 135 23 chr9 43135250 43135719 -99135725 - MER34B LTR ERV1 -1 564 1 198 402 56 9 chr9 43135831 43135938 -99135506 - MER5B DNA MER1_type -12 166 55 2414 61 0 0 chr9 43136106 43136402 -99135042 + AluY SINE Alu 1 296 -15 1455 144 116 49 chr9 43136845 43137130 -99134314 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 43139147 43139175 -99132269 + AT_rich Low_complexity Low_complexity 1 28 0 3916 96 24 21 chr9 43140339 43140957 -99130487 - L1MA1 LINE L1 0 6302 5683 267 287 74 33 chr9 43141807 43141988 -99129456 - MIR SINE MIR -49 213 27 198 191 0 0 chr9 43142123 43142165 -99129279 + (TA)n Simple_repeat Simple_repeat 1 42 0 1146 219 78 39 chr9 43142188 43142626 -99128818 + L1ME2 LINE L1 39 493 -5903 411 224 54 80 chr9 43142634 43142713 -99128731 - MER106B DNA MER1_type -5 1054 974 2043 103 0 34 chr9 43142713 43143040 -99128404 - AluY SINE Alu 0 317 1 411 224 54 80 chr9 43143040 43143205 -99128239 - MER106B DNA MER1_type -85 974 1 1051 245 68 43 chr9 43143206 43143462 -99127982 + L1ME2 LINE L1 514 787 -5609 2109 84 14 3 chr9 43143462 43143749 -99127695 + AluY SINE Alu 1 290 -21 1051 245 68 43 chr9 43143749 43143933 -99127511 + L1ME2 LINE L1 787 965 -5431 1866 249 66 72 chr9 43143948 43145165 -99126279 + L1ME2 LINE L1 1012 2220 -4176 2664 217 62 31 chr9 43145172 43146160 -99125284 + L1ME2 LINE L1 5196 6224 -9 264 79 0 0 chr9 43147216 43147254 -99124190 - L1M4b LINE L1 -6732 127 90 578 124 48 76 chr9 43147741 43147886 -99123558 - L1P LINE L1 -746 5410 5270 3474 119 33 3 chr9 43147886 43148464 -99122980 + L1PB4 LINE L1 5384 5978 -178 2298 48 0 55 chr9 43148481 43148793 -99122651 + AluY SINE Alu 1 295 -16 2421 69 0 19 chr9 43148910 43149227 -99122217 + AluY SINE Alu 1 311 0 646 262 24 0 chr9 43149800 43149964 -99121480 - MER5A DNA MER1_type -5 184 17 586 259 134 0 chr9 43149979 43150180 -99121264 + MIR SINE MIR 22 249 -13 185 196 103 112 chr9 43150230 43150337 -99121107 - L3 LINE CR1 -3 1574 1469 621 225 59 5 chr9 43151409 43151596 -99119848 + L1 LINE L1 4538 4734 -1412 233 209 0 0 chr9 43152409 43152452 -99118992 + CT-rich Low_complexity Low_complexity 3 45 0 2472 67 0 0 chr9 43152929 43153229 -99118215 + AluY SINE Alu 1 300 -11 2722 91 6 3 chr9 43153408 43153771 -99117673 + THE1B LTR MaLR 1 364 0 2412 61 7 0 chr9 43155045 43155340 -99116104 - AluY SINE Alu -14 297 1 2116 69 45 21 chr9 43155864 43156154 -99115290 - AluY SINE Alu -14 297 1 15670 211 28 11 chr9 43156716 43158972 -99112472 + L1PA15 LINE L1 1319 3536 -3280 1967 66 92 4 chr9 43158972 43159243 -99112201 - AluY SINE Alu -16 295 1 15670 211 28 11 chr9 43159243 43162403 -99109041 + L1PA15 LINE L1 3536 6816 0 239 106 43 0 chr9 43162737 43162784 -99108660 + A-rich Low_complexity Low_complexity 2 50 0 934 227 33 94 chr9 43164637 43164990 -99106454 + MLT1A2 LTR MaLR 1 329 -45 2412 70 0 16 chr9 43164990 43165302 -99106142 - AluY SINE Alu -4 307 1 934 227 33 94 chr9 43165302 43165340 -99106104 + MLT1A2 LTR MaLR 329 368 -6 2446 63 0 0 chr9 43166915 43167202 -99104242 - AluY SINE Alu -24 287 1 836 259 8 59 chr9 43167292 43167387 -99104057 + MIR SINE MIR 2 100 -162 2821 144 25 16 chr9 43167387 43167872 -99103572 + LTR45B LTR ERV1 1 489 0 836 259 8 59 chr9 43167872 43168012 -99103432 + MIR SINE MIR 100 225 -37 23 33 0 0 chr9 43168398 43168428 -99103016 + AT_rich Low_complexity Low_complexity 1 30 0 2327 68 0 0 chr9 43168589 43168900 -99102544 + AluY SINE Alu 1 311 0 582 296 17 6 chr9 43169860 43170039 -99101405 + MLT1J LTR MaLR 10 190 -321 12662 188 16 10 chr9 43170048 43172638 -99098806 + L1PA13 LINE L1 1 2621 -4176 5892 190 14 23 chr9 43172836 43173982 -99097462 - L1PA13 LINE L1 -5650 1137 2 4084 191 77 13 chr9 43174174 43175299 -99096145 + L1MC2 LINE L1 4443 5707 -637 2298 99 0 0 chr9 43175299 43175591 -99095853 - AluSc SINE Alu -17 292 1 4084 191 77 13 chr9 43175591 43176157 -99095287 + L1MC2 LINE L1 5707 6235 -109 1375 160 31 12 chr9 43177479 43178083 -99093361 + MER39 LTR ERV1 1 707 0 280 331 153 0 chr9 43178122 43178285 -99093159 - MIR3 SINE MIR -3 205 18 2258 75 16 20 chr9 43179492 43179820 -99091624 - AluY SINE Alu 0 327 1 2384 91 0 0 chr9 43180519 43180828 -99090616 - AluY SINE Alu -2 309 1 2297 80 7 7 chr9 43181643 43181932 -99089512 - AluSg SINE Alu -21 289 1 2677 101 13 0 chr9 43181938 43182334 -99089110 - L1PA13 LINE L1 -3 6160 5760 23 0 0 0 chr9 43182339 43182362 -99089082 + AT_rich Low_complexity Low_complexity 1 23 0 405 301 109 93 chr9 43182612 43182877 -99088567 + L2 LINE L2 2340 2599 -673 2135 135 125 16 chr9 43182877 43183262 -99088182 - MSTA LTR MaLR -1 427 1 405 301 109 93 chr9 43183262 43183921 -99087523 + L2 LINE L2 2599 3263 -9 212 357 135 16 chr9 43183904 43184156 -99087288 - L2 LINE L2 -12 3301 3020 * 360 213 0 38 chr9 43184198 43184278 -99087166 - MER63 DNA MER1_type -329 733 31 186 293 17 0 chr9 43184331 43184389 -99087055 - L2 LINE L2 -955 2359 2301 403 281 0 12 chr9 43184490 43184508 -99086936 - L1MA10 LINE L1 -1 6333 6316 972 252 51 55 chr9 43184508 43184808 -99086636 - L1ME1 LINE L1 -10 6156 5856 2197 85 3 7 chr9 43184808 43185125 -99086319 - AluY SINE Alu 0 316 1 972 252 51 55 chr9 43185125 43185311 -99086133 - L1ME1 LINE L1 -310 5856 5671 289 211 14 0 chr9 43185311 43185382 -99086062 + MER74B LTR ERVL 50 121 -501 1615 167 0 16 chr9 43186486 43186743 -99084701 - AluJo SINE Alu -59 253 1 2530 53 0 0 chr9 43186752 43187055 -99084389 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 43187916 43187945 -99083499 + AT_rich Low_complexity Low_complexity 1 29 0 2553 228 249 10 chr9 43188234 43190244 -99081200 + L1MA9 LINE L1 1 2508 -4529 * 4468 187 139 11 chr9 43190233 43190698 -99080746 + L1MA9 LINE L1 5008 5412 -1715 2277 88 3 16 chr9 43190698 43191003 -99080441 + AluSp SINE Alu 1 301 -12 4468 187 139 11 chr9 43191003 43191747 -99079697 + L1MA9 LINE L1 5412 6373 -754 4184 149 29 59 chr9 43191765 43192553 -99078891 + L1MA9 LINE L1 6355 7166 -106 254 29 29 0 chr9 43192553 43192588 -99078856 + (CA)n Simple_repeat Simple_repeat 1 36 0 4184 149 29 59 chr9 43192588 43192683 -99078761 + L1MA9 LINE L1 7166 7212 -60 2223 106 10 0 chr9 43192683 43192986 -99078458 - AluSq SINE Alu -7 306 1 4184 149 29 59 chr9 43192986 43193012 -99078432 + L1MA9 LINE L1 7212 7237 -35 388 274 29 73 chr9 43193102 43193189 -99078255 + L2 LINE L2 3119 3208 -105 2146 124 0 7 chr9 43193189 43193487 -99077957 - AluSq SINE Alu -17 296 1 388 274 29 73 chr9 43193487 43193603 -99077841 + L2 LINE L2 3208 3313 0 210 385 19 10 chr9 43193873 43193977 -99077467 + MIR3 SINE MIR 94 198 -10 2632 200 107 11 chr9 43194336 43195124 -99076320 - L1MC2 LINE L1 -344 6000 5141 766 188 0 7 chr9 43195201 43195345 -99076099 + FRAM SINE Alu 22 164 -12 3139 252 42 33 chr9 43195345 43196587 -99074857 - L1MC2 LINE L1 -1076 5070 3818 1366 201 118 97 chr9 43196674 43197387 -99074057 - LTR1B LTR ERV1 -81 745 18 338 260 5 2 chr9 43197539 43197623 -99073821 - L1MC2 LINE L1 -2318 3828 3741 703 180 31 12 chr9 43197623 43197784 -99073660 - L1MA9 LINE L1 0 6312 6149 338 260 5 2 chr9 43197784 43197799 -99073645 - L1MC2 LINE L1 -2405 3741 3728 516 168 0 9 chr9 43197833 43197946 -99073498 - L1MA7 LINE L1 -2 6289 6178 1747 170 57 24 chr9 43197948 43198331 -99073113 - MER31A LTR ERV1 -89 396 1 23 0 0 0 chr9 43198817 43198840 -99072604 + AT_rich Low_complexity Low_complexity 1 23 0 2087 101 17 0 chr9 43199149 43199436 -99072008 - AluSc SINE Alu -17 292 1 1314 165 0 9 chr9 43199502 43199720 -99071724 - MER20 DNA MER1_type 0 219 4 2440 52 13 3 chr9 43199973 43200279 -99071165 - AluY SINE Alu -1 310 2 2543 62 0 7 chr9 43200469 43200775 -99070669 - AluY SINE Alu -7 304 1 306 0 0 0 chr9 43200944 43200978 -99070466 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 2305 79 3 0 chr9 43201359 43201649 -99069795 + AluY SINE Alu 1 291 -20 432 0 0 0 chr9 43201651 43201699 -99069745 + (TA)n Simple_repeat Simple_repeat 1 48 0 2545 149 29 2 chr9 43201893 43201931 -99069513 - MSTA LTR MaLR 0 428 392 1841 143 7 18 chr9 43201931 43202262 -99069182 - AluSx SINE Alu 0 312 1 2545 149 29 2 chr9 43202262 43202640 -99068804 - MSTA LTR MaLR -36 392 1 2416 86 16 0 chr9 43203161 43203464 -99067980 - AluSc SINE Alu -1 308 1 934 240 45 75 chr9 43203831 43204165 -99067279 + MER110 LTR ERV1 8 288 -203 2358 85 7 0 chr9 43204165 43204459 -99066985 - AluY SINE Alu -15 296 1 934 240 45 75 chr9 43204459 43204559 -99066885 + MER110 LTR ERV1 288 390 -101 1223 133 0 0 chr9 43204607 43204780 -99066664 + AluSg/x SINE Alu 130 302 -8 258 176 20 0 chr9 43204780 43204831 -99066613 + THE1C LTR MaLR 324 375 0 2370 81 0 0 chr9 43206695 43206993 -99064451 - AluSp SINE Alu -15 298 1 429 262 11 22 chr9 43207163 43207346 -99064098 + LTR37B LTR ERV1 231 411 -57 2361 96 0 0 chr9 43207702 43208004 -99063440 + AluSx SINE Alu 1 302 -10 330 26 0 0 chr9 43208850 43208889 -99062555 + (TG)n Simple_repeat Simple_repeat 2 40 0 254 289 119 19 chr9 43209052 43209211 -99062233 - MIR SINE MIR -18 244 70 2344 106 0 0 chr9 43209231 43209533 -99061911 + AluSx SINE Alu 1 302 -10 501 341 65 9 chr9 43210149 43210378 -99061066 - MIR SINE MIR -19 243 2 35 54 0 0 chr9 43210386 43210442 -99061002 + AT_rich Low_complexity Low_complexity 1 56 0 26 82 0 0 chr9 43210465 43210526 -99060918 + AT_rich Low_complexity Low_complexity 1 61 0 2328 66 0 23 chr9 43210779 43211082 -99060362 - AluY SINE Alu -15 296 1 313 296 119 87 chr9 43211121 43211259 -99060185 - L1MEd LINE L1 -2231 3898 3766 1468 181 41 24 chr9 43211259 43211597 -99059847 - L1MC2 LINE L1 -11 6333 5990 313 296 119 87 chr9 43211597 43211735 -99059709 - L1MEd LINE L1 -2363 3766 3613 1590 139 174 47 chr9 43211872 43212210 -99059234 + MSTA LTR MaLR 1 394 -34 2536 43 0 13 chr9 43212210 43212512 -99058932 - AluY SINE Alu -13 298 1 1590 139 174 47 chr9 43212512 43212553 -99058891 + MSTA LTR MaLR 394 428 0 464 292 25 61 chr9 43212732 43213009 -99058435 - L1MEd LINE L1 -3395 2734 2468 1386 208 0 63 chr9 43213415 43213732 -99057712 + AluJo SINE Alu 1 297 -15 1972 125 0 7 chr9 43213732 43214017 -99057427 + AluSx SINE Alu 27 311 -1 309 283 41 21 chr9 43214017 43214162 -99057282 + MER41B LTR ERV1 283 430 -205 480 309 98 48 chr9 43214424 43215003 -99056441 - L1MEd LINE L1 -5172 947 311 2247 84 37 7 chr9 43215003 43215301 -99056143 + AluY SINE Alu 2 308 -3 480 309 98 48 chr9 43215301 43215571 -99055873 - L1MEd LINE L1 -5808 311 56 1968 79 8 11 chr9 43215811 43216105 -99055339 - AluY SINE Alu 0 309 17 277 189 16 0 chr9 43216151 43216229 -99055215 - L1MB5 LINE L1 -42 6132 6050 285 89 22 0 chr9 43216540 43216585 -99054859 + Alu SINE Alu 237 282 -19 2378 64 20 7 chr9 43217127 43217425 -99054019 - AluY SINE Alu -9 302 1 1227 30 0 0 chr9 43217426 43217560 -99053884 - AluY SINE Alu -177 134 1 1701 236 106 37 chr9 43217561 43218240 -99053204 - L1MCa LINE L1 -5699 727 2 2506 60 0 0 chr9 43219249 43219549 -99051895 + AluY SINE Alu 1 300 -11 1720 209 82 19 chr9 43219552 43220249 -99051195 - L1MCb LINE L1 -4851 1194 634 29 28 0 0 chr9 43220249 43220285 -99051159 + AT_rich Low_complexity Low_complexity 1 36 0 2041 141 10 0 chr9 43220614 43220919 -99050525 + AluSx SINE Alu 1 308 -4 2099 110 0 32 chr9 43221515 43221823 -99049621 + AluY SINE Alu 1 298 -13 1521 211 64 44 chr9 43223139 43223595 -99047849 - LTR40c LTR ERVL 0 465 1 238 329 14 0 chr9 43223695 43223768 -99047676 + MIR3 SINE MIR 126 199 -9 680 194 0 61 chr9 43223852 43224017 -99047427 + MER3 DNA MER1_type 5 159 -50 2323 77 0 62 chr9 43224020 43224343 -99047101 - AluY SINE Alu -8 303 1 1194 262 122 17 chr9 43224701 43225224 -99046220 - LTR48B LTR ERV1 -2 642 65 2534 63 0 0 chr9 43225225 43225526 -99045918 + AluY SINE Alu 1 301 -10 562 159 38 8 chr9 43225686 43225818 -99045626 + LTR37B LTR ERV1 333 468 0 415 324 112 22 chr9 43225895 43226352 -99045092 - L1M4 LINE L1 -991 5155 4658 598 231 100 6 chr9 43226531 43226691 -99044753 + MER5B DNA MER1_type 2 176 -2 2079 137 16 0 chr9 43228578 43228885 -99042559 + AluSx SINE Alu 1 312 0 2175 98 14 0 chr9 43228888 43229175 -99042269 + AluY SINE Alu 20 310 -1 2314 104 0 0 chr9 43229177 43229484 -99041960 + AluSq SINE Alu 1 307 -6 436 224 68 41 chr9 43230033 43230180 -99041264 - MER58A DNA MER1_type -29 195 45 328 333 0 0 chr9 43231631 43231733 -99039711 - MER94 DNA DNA -32 102 1 1893 155 111 17 chr9 43232625 43232947 -99038497 + MLT2D LTR ERVL 17 378 -36 369 75 0 0 chr9 43232947 43233000 -99038444 + (CA)n Simple_repeat Simple_repeat 2 54 0 1893 155 111 17 chr9 43233000 43233039 -99038405 + MLT2D LTR ERVL 378 412 -2 21 36 0 0 chr9 43233239 43233267 -99038177 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 43233351 43233374 -99038070 + AT_rich Low_complexity Low_complexity 1 23 0 1284 180 141 0 chr9 43234586 43234841 -99036603 + AluJb SINE Alu 1 291 -11 2488 43 20 7 chr9 43235352 43235651 -99035793 - AluY SINE Alu -8 303 1 23 54 0 0 chr9 43237612 43237649 -99033795 + AT_rich Low_complexity Low_complexity 1 37 0 21 89 0 0 chr9 43237786 43237842 -99033602 + AT_rich Low_complexity Low_complexity 1 56 0 2431 76 0 0 chr9 43238639 43238943 -99032501 - AluY SINE Alu -7 304 1 3626 198 19 69 chr9 43240163 43241089 -99030355 - L1MB8 LINE L1 0 6414 5537 2429 85 0 0 chr9 43241089 43241395 -99030049 - AluY SINE Alu -4 307 2 3626 198 19 69 chr9 43241395 43241500 -99029944 - L1MB8 LINE L1 -877 5537 5428 8135 237 52 35 chr9 43241501 43244515 -99026929 - L1MB8 LINE L1 -1088 5294 2226 5580 213 49 19 chr9 43244523 43246869 -99024575 - L1MB4 LINE L1 -7 6173 3767 234 226 69 39 chr9 43246887 43246989 -99024455 - L1MDa LINE L1 -4178 2779 2675 21 0 0 0 chr9 43247041 43247062 -99024382 + AT_rich Low_complexity Low_complexity 1 21 0 1336 290 60 13 chr9 43247374 43247568 -99023876 - L1MDa LINE L1 -4543 2416 2232 1332 114 13 13 chr9 43247568 43247796 -99023648 - L1MA4 LINE L1 -1 6299 6072 1336 290 60 13 chr9 43247796 43248288 -99023156 - L1MDa LINE L1 -4727 2232 1698 * 3129 268 73 7 chr9 43248272 43249120 -99022324 - L1MDa LINE L1 -5946 913 10 21 0 0 0 chr9 43250065 43250086 -99021358 + AT_rich Low_complexity Low_complexity 1 21 0 2115 96 65 0 chr9 43250121 43250412 -99021032 - AluSg SINE Alu 0 310 1 332 191 2 132 chr9 43250612 43250743 -99020701 + AluJo SINE Alu 51 137 -165 336 344 37 6 chr9 43252015 43252178 -99019266 - MER5A DNA MER1_type -6 183 16 358 337 37 6 chr9 43253562 43253725 -99017719 - MER5A DNA MER1_type -6 183 16 205 253 0 0 chr9 43254623 43254676 -99016768 + MIR SINE MIR 99 140 -68 2084 115 0 13 chr9 43254708 43255020 -99016424 + AluSc SINE Alu 2 309 0 1884 155 0 20 chr9 43256010 43256313 -99015131 + AluSx SINE Alu 1 297 -15 727 268 163 0 chr9 43256905 43257151 -99014293 - L2 LINE L2 -763 2551 2266 453 36 0 0 chr9 43257177 43257232 -99014212 + (CA)n Simple_repeat Simple_repeat 1 55 0 3218 230 74 46 chr9 43257292 43257856 -99013588 - L1MC4 LINE L1 -364 7678 7131 2269 85 0 0 chr9 43257856 43258163 -99013281 + AluY SINE Alu 1 307 0 3218 230 74 46 chr9 43258163 43258784 -99012660 - L1MC4 LINE L1 -911 7131 6459 1397 187 23 4 chr9 43259002 43259259 -99012185 - AluJo SINE Alu -13 299 38 413 239 17 17 chr9 43259949 43260125 -99011319 + GA-rich Low_complexity Low_complexity 4 179 0 1359 224 13 31 chr9 43260668 43260985 -99010459 - LTR40b LTR ERVL 0 462 152 230 302 42 31 chr9 43261197 43261293 -99010151 + HAL1b LINE L1 391 487 -861 274 264 97 51 chr9 43261444 43261660 -99009784 + HAL1b LINE L1 433 658 -690 1092 219 98 16 chr9 43262159 43262474 -99008970 - MER58B DNA MER1_type 0 341 1 2071 149 0 0 chr9 43262823 43263131 -99008313 + AluJb SINE Alu 1 308 -4 245 346 19 39 chr9 43263139 43263243 -99008201 - L2 LINE L2 -23 3249 3148 183 211 0 26 chr9 43263327 43263365 -99008079 + MIR SINE MIR 43 79 -129 1322 168 50 0 chr9 43263761 43264023 -99007421 - L1MA4 LINE L1 -11 6289 6015 36 0 0 0 chr9 43264874 43264910 -99006534 + AT_rich Low_complexity Low_complexity 1 36 0 2318 91 0 3 chr9 43265077 43265373 -99006071 - AluSg SINE Alu -15 295 1 608 274 89 63 chr9 43265451 43265728 -99005716 - L1M4 LINE L1 -1317 4829 4561 944 200 47 33 chr9 43265728 43265943 -99005501 - MER20 DNA MER1_type -1 218 1 608 274 89 63 chr9 43265943 43266303 -99005141 - L1M4 LINE L1 -1585 4561 4175 22 0 0 0 chr9 43266553 43266575 -99004869 + AT_rich Low_complexity Low_complexity 1 22 0 510 204 0 0 chr9 43266683 43266791 -99004653 + (CA)n Simple_repeat Simple_repeat 2 109 0 2412 66 0 10 chr9 43266791 43267094 -99004350 - AluY SINE Alu -11 300 1 342 252 63 0 chr9 43267210 43267337 -99004107 - L1M4 LINE L1 -3793 2353 2219 22 35 0 0 chr9 43267714 43267743 -99003701 + AT_rich Low_complexity Low_complexity 1 29 0 1613 79 23 0 chr9 43268665 43268880 -99002564 + AluSg/x SINE Alu 81 300 -10 2037 127 3 0 chr9 43269682 43270000 -99001444 - AluSx SINE Alu 0 312 1 340 252 82 22 chr9 43270319 43270454 -99000990 + MER103 DNA DNA 14 156 -10 587 233 83 0 chr9 43272387 43272520 -98998924 + L1MD1 LINE L1 158 301 -6242 * 2460 219 116 29 chr9 43272508 43273101 -98998343 + L1MD1 LINE L1 1320 1859 -4681 2340 70 13 0 chr9 43273101 43273402 -98998042 + AluY SINE Alu 1 305 -6 2460 219 116 29 chr9 43273402 43274104 -98997340 + L1MD1 LINE L1 1859 2891 -3649 3104 236 57 56 chr9 43274127 43274781 -98996663 + L1MCb LINE L1 1 653 -5911 2472 41 6 22 chr9 43274781 43275097 -98996347 + AluY SINE Alu 1 311 0 3104 236 57 56 chr9 43275097 43275800 -98995644 + L1MCb LINE L1 653 1354 -5210 2521 46 0 7 chr9 43275800 43276104 -98995340 - AluY SINE Alu -9 302 1 3104 236 57 56 chr9 43276104 43277165 -98994279 + L1MCb LINE L1 1354 2578 -3986 7258 47 5 0 chr9 43277165 43278226 -98993218 + L1PA5 LINE L1 5094 6151 -3 3104 236 57 56 chr9 43278226 43279001 -98992443 + L1MCb LINE L1 2578 3351 -3213 1239 246 47 0 chr9 43279009 43279396 -98992048 + L1MCb LINE L1 3908 4312 -2252 334 131 0 0 chr9 43279402 43279463 -98991981 + L1MC2 LINE L1 6274 6334 -10 6776 220 65 35 chr9 43279468 43280533 -98990911 + L1MD1 LINE L1 2884 3916 -2720 2321 108 0 6 chr9 43280533 43280847 -98990597 - AluSx SINE Alu 0 312 1 6776 220 65 35 chr9 43280847 43283201 -98988243 + L1MD1 LINE L1 3916 6435 -201 2445 61 3 16 chr9 43283201 43283511 -98987933 - AluY SINE Alu -5 306 1 6776 220 65 35 chr9 43283511 43283698 -98987746 + L1MD1 LINE L1 6435 6615 -21 202 211 0 96 chr9 43283812 43283864 -98987580 + MER5B DNA MER1_type 32 78 -100 323 313 62 36 chr9 43283959 43284154 -98987290 - MIR SINE MIR -61 201 2 2116 74 0 7 chr9 43284252 43284522 -98986922 + AluSx SINE Alu 1 268 -44 668 164 9 0 chr9 43284735 43284845 -98986599 - AluJb SINE Alu -17 295 185 2258 97 0 19 chr9 43287125 43287436 -98984008 - AluSx SINE Alu -7 305 1 242 245 0 19 chr9 43287919 43287972 -98983472 - MIR3 SINE MIR -10 198 147 661 147 0 0 chr9 43287977 43288086 -98983358 - FRAM SINE Alu -8 168 60 1575 149 97 49 chr9 43288301 43288556 -98982888 - MER47A DNA MER2_type -1957 366 87 2198 88 0 7 chr9 43288556 43288882 -98982562 + AluSc SINE Alu 1 324 0 1575 149 97 49 chr9 43288882 43288974 -98982470 - MER47A DNA MER2_type -2236 87 1 3395 119 91 56 chr9 43289128 43289171 -98982273 - L1MCa LINE L1 -4740 1686 1646 180 0 0 0 chr9 43289171 43289191 -98982253 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3395 119 91 56 chr9 43289191 43289326 -98982118 - L1MCa LINE L1 -4780 1646 1517 2141 117 3 3 chr9 43289326 43289616 -98981828 + AluSp SINE Alu 1 290 -23 3395 119 91 56 chr9 43289616 43290209 -98981235 - L1MCa LINE L1 -4909 1517 881 2348 86 0 7 chr9 43290209 43290513 -98980931 - AluY SINE Alu 0 311 10 3395 119 91 56 chr9 43290513 43290561 -98980883 - L1MCa LINE L1 -5545 881 836 1097 161 0 0 chr9 43290565 43290727 -98980717 - AluJb SINE Alu -9 303 142 464 209 18 27 chr9 43290769 43290879 -98980565 - FLAM_C SINE Alu -13 130 22 3594 178 45 21 chr9 43290885 43291161 -98980283 - L1MCa LINE L1 -5602 824 556 275 26 51 0 chr9 43291161 43291200 -98980244 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 3594 178 45 21 chr9 43291200 43291681 -98979763 - L1MCa LINE L1 -5870 556 49 240 311 133 22 chr9 43291854 43291989 -98979455 + MIR3 SINE MIR 42 191 -17 2377 94 0 7 chr9 43292444 43292753 -98978691 - AluSc SINE Alu -2 307 1 24 0 0 0 chr9 43293090 43293114 -98978330 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 43293508 43293537 -98977907 + AT_rich Low_complexity Low_complexity 1 29 0 2424 89 0 0 chr9 43295098 43295400 -98976044 + AluY SINE Alu 1 302 -9 624 274 24 0 chr9 43295965 43296129 -98975315 - MER5A DNA MER1_type -5 184 17 614 265 118 0 chr9 43296144 43296348 -98975096 + MIR SINE MIR 22 249 -13 185 196 103 112 chr9 43296398 43296505 -98974939 - L3 LINE CR1 -3 1574 1469 786 198 31 5 chr9 43297590 43297782 -98973662 + L1 LINE L1 4538 4734 -1412 219 233 0 0 chr9 43298595 43298638 -98972806 + CT-rich Low_complexity Low_complexity 3 45 0 2404 53 0 0 chr9 43299115 43299397 -98972047 + AluY SINE Alu 1 282 -29 204 40 0 0 chr9 43299400 43299425 -98972019 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2743 91 3 3 chr9 43299601 43299965 -98971479 + THE1B LTR MaLR 1 364 0 2368 67 7 0 chr9 43301233 43301531 -98969913 - AluY SINE Alu -11 300 1 2173 64 44 24 chr9 43302051 43302349 -98969095 - AluY SINE Alu -7 304 1 439 193 184 0 chr9 43303861 43303975 -98967469 - MER58C DNA MER1_type 0 215 81 2413 77 0 10 chr9 43303979 43304290 -98967154 + AluY SINE Alu 1 308 -3 2103 89 0 40 chr9 43305369 43305672 -98965772 - AluY SINE Alu -20 291 1 2041 141 10 0 chr9 43306260 43306565 -98964879 - AluSx SINE Alu -4 308 1 21 0 0 0 chr9 43308378 43308399 -98963045 + AT_rich Low_complexity Low_complexity 1 21 0 1491 164 47 60 chr9 43309055 43309354 -98962090 + AluJb SINE Alu 1 295 -17 2257 92 0 29 chr9 43310046 43310352 -98961092 - AluY SINE Alu -14 297 1 839 194 14 28 chr9 43311147 43311364 -98960080 + L1MA9 LINE L1 6074 6287 -25 26 0 0 0 chr9 43311364 43311390 -98960054 + AT_rich Low_complexity Low_complexity 1 26 0 879 167 105 29 chr9 43311533 43311743 -98959701 - MLT1B LTR MaLR -164 226 1 256 132 59 0 chr9 43312051 43312119 -98959325 + (TA)n Simple_repeat Simple_repeat 2 73 0 1370 109 0 43 chr9 43312125 43312336 -98959108 - AluSq SINE Alu -109 204 3 405 0 0 0 chr9 43312336 43312381 -98959063 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1512 215 111 35 chr9 43312554 43313066 -98958378 - MLT1E2 LTR MaLR -65 561 11 6833 177 38 5 chr9 43313156 43314241 -98957203 + L1PA15 LINE L1 3933 4981 -1184 1529 151 81 28 chr9 43314241 43314360 -98957084 + AluJo SINE Alu 2 113 -199 375 23 0 0 chr9 43314360 43314404 -98957040 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1529 151 81 28 chr9 43314404 43314568 -98956876 + AluJo SINE Alu 113 300 -12 6833 177 38 5 chr9 43314568 43315692 -98955752 + L1PA15 LINE L1 4981 6163 -2 2265 106 0 3 chr9 43316249 43316561 -98954883 + AluY SINE Alu 1 311 0 641 250 106 40 chr9 43316639 43316925 -98954519 - MER93b LTR ERV1 -3 370 92 1255 182 87 33 chr9 43317657 43317992 -98953452 - MLT1A1 LTR MaLR -2 363 11 853 219 127 4 chr9 43319327 43319587 -98951857 + LTR37A LTR ERV1 78 369 -57 1916 144 3 3 chr9 43319654 43319961 -98951483 + AluSx SINE Alu 2 308 0 777 173 189 86 chr9 43320631 43320713 -98950731 + LTR37A LTR ERV1 18 90 -336 2491 74 0 3 chr9 43320713 43321023 -98950421 - AluY SINE Alu -2 309 1 777 173 189 86 chr9 43321023 43321311 -98950133 + LTR37A LTR ERV1 90 426 0 518 193 201 31 chr9 43321879 43322046 -98949398 + LTR37A LTR ERV1 111 248 -178 2337 189 127 17 chr9 43322046 43322686 -98948758 + MER67C LTR ERV1 1 710 0 518 193 201 31 chr9 43322686 43322777 -98948667 + LTR37A LTR ERV1 248 413 -13 229 300 55 36 chr9 43323466 43323576 -98947868 - MIR SINE MIR -119 143 32 285 273 13 0 chr9 43324606 43324683 -98946761 - L2 LINE L2 -9 3263 3186 604 144 38 8 chr9 43324735 43324867 -98946577 + LTR37B LTR ERV1 333 468 0 416 310 85 21 chr9 43325072 43325401 -98946043 - L1M4 LINE L1 -1139 5007 4658 551 231 100 6 chr9 43325580 43325740 -98945704 + MER5B DNA MER1_type 2 176 -2 2066 136 16 3 chr9 43327631 43327939 -98943505 + AluSx SINE Alu 1 312 0 1904 100 77 0 chr9 43327942 43328201 -98943243 + AluY SINE Alu 20 298 -13 2096 122 3 3 chr9 43328206 43328509 -98942935 + AluSq SINE Alu 3 305 -8 440 219 48 119 chr9 43329056 43329266 -98942178 - MER58A DNA MER1_type -29 195 1 2259 92 3 0 chr9 43330952 43331235 -98940209 - AluSg SINE Alu -26 284 1 1512 211 64 44 chr9 43331626 43332082 -98939362 - LTR40c LTR ERVL 0 465 1 216 343 14 0 chr9 43332182 43332255 -98939189 + MIR3 SINE MIR 126 199 -9 915 164 0 89 chr9 43332339 43332507 -98938937 + MER3 DNA MER1_type 5 150 -59 2362 81 0 29 chr9 43332507 43332817 -98938627 - AluY SINE Alu -10 301 1 915 164 0 89 chr9 43332817 43332873 -98938571 + MER3 DNA MER1_type 150 209 0 2417 76 0 16 chr9 43333649 43333953 -98937491 + AluSc SINE Alu 1 299 -10 1408 234 37 31 chr9 43334041 43334495 -98936949 - MER31A LTR ERV1 -27 458 2 26 50 0 0 chr9 43335345 43335385 -98936059 + AT_rich Low_complexity Low_complexity 1 40 0 230 143 0 0 chr9 43336091 43336133 -98935311 - L1MA7 LINE L1 -64 6227 6186 2020 147 0 6 chr9 43336377 43336689 -98934755 - AluSx SINE Alu -2 310 1 2222 56 4 0 chr9 43337018 43337320 -98934124 - AluY SINE Alu 0 319 17 277 189 16 0 chr9 43337366 43337444 -98934000 - L1MB5 LINE L1 -42 6132 6050 2057 93 43 0 chr9 43337646 43337926 -98933518 - AluY SINE Alu -19 292 1 708 245 108 20 chr9 43338679 43339158 -98932286 - MER34B LTR ERV1 -1 564 1 198 402 56 9 chr9 43339270 43339377 -98932067 - MER5B DNA MER1_type -12 166 55 2507 47 0 0 chr9 43339545 43339841 -98931603 + AluY SINE Alu 1 296 -15 1443 146 115 56 chr9 43340284 43340571 -98930873 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 43342600 43342628 -98928816 + AT_rich Low_complexity Low_complexity 1 28 0 3914 96 24 21 chr9 43343789 43344407 -98927037 - L1MA1 LINE L1 0 6302 5683 238 302 74 33 chr9 43345253 43345434 -98926010 - MIR SINE MIR -49 213 27 186 224 0 0 chr9 43345569 43345618 -98925826 + (TA)n Simple_repeat Simple_repeat 1 49 0 1146 226 78 39 chr9 43345630 43346068 -98925376 + L1ME2 LINE L1 39 493 -5903 445 245 45 36 chr9 43346076 43346151 -98925293 - MER106B DNA MER1_type -5 1054 981 1980 100 0 68 chr9 43346151 43346493 -98924951 - AluY SINE Alu 0 311 1 445 245 45 36 chr9 43346493 43346658 -98924786 - MER106B DNA MER1_type -78 981 1 2690 242 87 68 chr9 43346659 43346915 -98924529 + L1ME2 LINE L1 514 764 -5632 2124 80 14 3 chr9 43346915 43347202 -98924242 + AluY SINE Alu 1 290 -21 2690 242 87 68 chr9 43347202 43348620 -98922824 + L1ME2 LINE L1 764 2220 -4176 * 2756 209 64 36 chr9 43348603 43349614 -98921830 + L1ME2 LINE L1 5176 6224 -9 195 129 0 0 chr9 43349616 43349647 -98921797 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 264 79 0 0 chr9 43350655 43350693 -98920751 - L1M4b LINE L1 -6732 127 90 588 123 41 75 chr9 43351184 43351330 -98920114 - L1P LINE L1 -746 5410 5270 3374 124 33 5 chr9 43351330 43351909 -98919535 + L1PB4 LINE L1 5384 5978 -178 2310 48 0 55 chr9 43351926 43352236 -98919208 + AluY SINE Alu 1 293 -18 2515 53 0 28 chr9 43352353 43352673 -98918771 + AluY SINE Alu 1 311 0 24 0 0 0 chr9 43353197 43353221 -98918223 + AT_rich Low_complexity Low_complexity 1 24 0 1078 78 0 0 chr9 43353783 43353912 -98917532 - AluSg SINE Alu -21 291 163 710 82 0 0 chr9 43353917 43354014 -98917430 - AluSg SINE Alu -213 97 1 284 278 65 37 chr9 43354862 43354970 -98916474 + L3b LINE CR1 1290 1400 -183 23 0 0 0 chr9 43355418 43355441 -98916003 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 43355507 43355532 -98915912 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 43355768 43355797 -98915647 + AT_rich Low_complexity Low_complexity 1 29 0 2506 61 0 13 chr9 43355871 43356181 -98915263 - AluY SINE Alu -5 306 1 23 33 0 0 chr9 43356342 43356372 -98915072 + AT_rich Low_complexity Low_complexity 1 30 0 855 259 8 59 chr9 43356770 43356910 -98914534 - MIR SINE MIR -37 225 100 2889 142 23 16 chr9 43356910 43357396 -98914048 - LTR45B LTR ERV1 0 489 1 855 259 8 59 chr9 43357396 43357491 -98913953 - MIR SINE MIR -162 100 2 2441 63 0 0 chr9 43357583 43357868 -98913576 + AluY SINE Alu 3 287 -24 910 225 33 101 chr9 43359442 43359480 -98911964 - MLT1A2 LTR MaLR -6 368 329 2392 79 0 16 chr9 43359480 43359796 -98911648 + AluY SINE Alu 1 311 0 910 225 33 101 chr9 43359796 43360152 -98911292 - MLT1A2 LTR MaLR -45 329 1 338 58 39 0 chr9 43361994 43362046 -98909398 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 15646 207 26 10 chr9 43362379 43365540 -98905904 - L1PA15 LINE L1 -1 6815 3529 1982 63 93 4 chr9 43365540 43365810 -98905634 + AluY SINE Alu 1 294 -17 15646 207 26 10 chr9 43365810 43368058 -98903386 - L1PA15 LINE L1 -3287 3529 1319 228 194 30 45 chr9 43368415 43368482 -98902962 + LTR40c LTR ERVL 5 70 -395 3428 189 38 4 chr9 43368489 43369200 -98902244 + L1MB3 LINE L1 5447 6181 -2 1406 253 34 10 chr9 43369263 43369651 -98901793 + LTR40c LTR ERVL 63 459 -6 210 176 0 0 chr9 43371633 43371684 -98899760 + (TG)n Simple_repeat Simple_repeat 2 52 0 3760 148 105 29 chr9 43371689 43373078 -98898366 + pTR5 LTR ERV1 742 2606 0 348 143 0 0 chr9 43373084 43373154 -98898290 + (TG)n Simple_repeat Simple_repeat 2 71 0 2454 57 0 3 chr9 43373543 43373842 -98897602 - AluY SINE Alu -13 298 1 1880 134 71 34 chr9 43375693 43376044 -98895400 - THE1B LTR MaLR 0 364 1 986 304 116 20 chr9 43376673 43377195 -98894249 + L2 LINE L2 2432 3005 -308 882 230 0 0 chr9 43377199 43377373 -98894071 + MSTB LTR MaLR 5 178 -248 27 29 0 0 chr9 43377717 43377751 -98893693 + AT_rich Low_complexity Low_complexity 1 34 0 2231 105 0 7 chr9 43377851 43378157 -98893287 + AluSq SINE Alu 2 305 -8 440 219 48 119 chr9 43378705 43378915 -98892529 - MER58A DNA MER1_type -29 195 1 301 333 0 0 chr9 43380324 43380426 -98891018 - MER94 DNA DNA -32 102 1 1741 152 118 17 chr9 43381319 43381639 -98889805 + MLT2D LTR ERVL 17 378 -36 516 45 0 0 chr9 43381639 43381706 -98889738 + (CA)n Simple_repeat Simple_repeat 2 68 0 1741 152 118 17 chr9 43381706 43381741 -98889703 + MLT2D LTR ERVL 378 408 -6 21 36 0 0 chr9 43381945 43381973 -98889471 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 43382057 43382080 -98889364 + AT_rich Low_complexity Low_complexity 1 23 0 1269 191 141 0 chr9 43383299 43383555 -98887889 + AluJb SINE Alu 1 292 -10 662 258 113 19 chr9 43384004 43384217 -98887227 + MIR SINE MIR 30 262 0 214 244 0 0 chr9 43384703 43384748 -98886696 - L2 LINE L2 -2 3270 3226 1748 171 3 13 chr9 43385023 43385322 -98886122 - AluJo SINE Alu -16 296 1 298 307 118 8 chr9 43385596 43385723 -98885721 + MER5A DNA MER1_type 43 183 -6 1883 144 21 7 chr9 43385801 43386092 -98885352 + AluSx SINE Alu 6 300 -12 2474 215 74 22 chr9 43386124 43386854 -98884590 - L1ME1 LINE L1 -3 6163 5396 233 162 88 29 chr9 43386887 43386955 -98884489 - L1ME1 LINE L1 -1556 4590 4519 204 259 0 37 chr9 43387104 43387158 -98884286 + CT-rich Low_complexity Low_complexity 5 56 0 1769 158 42 3 chr9 43387304 43387589 -98883855 - AluJb SINE Alu -16 296 1 23 54 0 0 chr9 43387589 43387626 -98883818 + AT_rich Low_complexity Low_complexity 1 37 0 362 280 30 87 chr9 43388364 43388709 -98882735 + L1MEd LINE L1 1042 1439 -1304 671 286 56 23 chr9 43388749 43389235 -98882209 + L1MEd LINE L1 1404 1905 -4658 23 54 0 0 chr9 43389306 43389343 -98882101 + AT_rich Low_complexity Low_complexity 1 37 0 678 272 88 16 chr9 43389528 43389969 -98881475 + L1MEd LINE L1 2301 2725 -3657 357 169 28 0 chr9 43390467 43390538 -98880906 + MER116 DNA Mariner 5 77 -3 675 348 112 16 chr9 43391791 43392597 -98878847 - L2 LINE L2 0 3313 2427 219 368 28 9 chr9 43392754 43392860 -98878584 - L2 LINE L2 -606 2708 2601 1499 164 74 0 chr9 43393462 43393731 -98877713 + 7SLRNA srpRNA srpRNA 24 312 -8 183 100 0 0 chr9 43393732 43393762 -98877682 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 181 367 0 0 chr9 43395189 43395238 -98876206 - L2 LINE L2 -20 3293 3245 311 280 28 9 chr9 43396028 43396135 -98875309 - MIR3 SINE MIR 0 208 100 2401 75 3 3 chr9 43396617 43396922 -98874522 + AluY SINE Alu 1 305 -6 2034 160 0 3 chr9 43397135 43397442 -98874002 - AluSx SINE Alu -6 306 1 24 32 0 0 chr9 43398282 43398313 -98873131 + AT_rich Low_complexity Low_complexity 1 31 0 192 318 220 8 chr9 43398850 43398982 -98872462 + MIR SINE MIR 53 212 -50 198 297 14 54 chr9 43399630 43399704 -98871740 - MIR SINE MIR -17 245 175 251 260 48 68 chr9 43399859 43400005 -98871439 + MIR SINE MIR 42 184 -78 289 336 49 7 chr9 43400844 43400987 -98870457 + MIR SINE MIR 22 170 -92 272 322 89 0 chr9 43401463 43401553 -98869891 + MIR SINE MIR 30 127 -81 2163 114 0 32 chr9 43401583 43401891 -98869553 + AluSx SINE Alu 1 298 -14 29 0 0 0 chr9 43402141 43402170 -98869274 + AT_rich Low_complexity Low_complexity 1 29 0 3786 154 39 22 chr9 43403925 43404640 -98866804 + LTR8A LTR ERV1 1 727 0 323 271 21 42 chr9 43404650 43404794 -98866650 - HERVS71 LTR ERV1 -3911 5067 4927 1990 140 72 4 chr9 43404887 43405494 -98865950 + MER50 LTR ERV1 12 711 -23 206 255 0 0 chr9 43406747 43406798 -98864646 + A-rich Low_complexity Low_complexity 1 51 0 1973 91 34 20 chr9 43408389 43408685 -98862759 + AluY SINE Alu 1 300 -11 441 268 54 0 chr9 43410178 43410290 -98861154 - MER8 DNA MER2_type -121 118 1 22 0 0 0 chr9 43410986 43411008 -98860436 + AT_rich Low_complexity Low_complexity 1 22 0 1581 132 0 0 chr9 43411603 43411822 -98859622 - AluSg/x SINE Alu -12 298 80 269 361 172 0 chr9 43412822 43412944 -98858500 - L2 LINE L2 -3 3269 3127 592 268 50 42 chr9 43413421 43413874 -98857570 + MLT1D LTR MaLR 7 505 0 213 39 0 0 chr9 43414252 43414278 -98857166 + (A)n Simple_repeat Simple_repeat 1 26 0 698 120 0 0 chr9 43417354 43417462 -98853982 - L1MA2 LINE L1 0 6304 6197 2046 106 33 10 chr9 43418391 43418693 -98852751 + AluSg SINE Alu 2 310 0 1842 153 55 0 chr9 43418767 43419113 -98852331 - L1MB3 LINE L1 -1 6182 5818 297 205 36 12 chr9 43419125 43419208 -98852236 - L1MB3 LINE L1 -411 5772 5688 668 213 20 87 chr9 43419215 43419410 -98852034 - MIR SINE MIR -48 214 31 351 204 39 29 chr9 43419584 43419687 -98851757 + MER58 DNA MER1_type 24 127 -88 1706 208 0 7 chr9 43419689 43419997 -98851447 + AluJo SINE Alu 1 306 -6 689 228 85 0 chr9 43420144 43420416 -98851028 - L1M3c LINE L1 -4645 1496 1202 651 179 61 14 chr9 43420418 43420593 -98850851 - MSTD LTR MaLR -51 377 155 234 114 0 0 chr9 43420591 43420626 -98850818 - MSTD LTR MaLR -361 35 1 * 5328 137 25 10 chr9 43420647 43422102 -98849342 - L1PA16 LINE L1 -5 6161 4708 11594 36 6 1 chr9 43422254 43424481 -98846963 + L1PA4 LINE L1 3942 6152 -3 286 327 108 16 chr9 43424591 43424842 -98846602 + LTR16C LTR ERVL 169 442 -49 1295 175 59 20 chr9 43425309 43425612 -98845832 - LTR40b LTR ERVL 0 462 148 2350 80 3 0 chr9 43426410 43426709 -98844735 + AluY SINE Alu 1 300 -11 2743 91 3 3 chr9 43427978 43428342 -98843102 - THE1B LTR MaLR 0 364 1 2328 64 0 7 chr9 43428519 43428831 -98842613 - AluY SINE Alu 0 310 1 272 322 89 0 chr9 43428861 43428951 -98842493 - MIR SINE MIR -81 127 30 606 253 146 0 chr9 43429457 43429690 -98841754 - L1MC4 LINE L1 -180 7862 7596 592 106 0 0 chr9 43430061 43430146 -98841298 - AluSg/x SINE Alu -12 298 214 1118 111 6 12 chr9 43430146 43430308 -98841136 - AluSq SINE Alu -152 161 1 2329 76 0 23 chr9 43430957 43431258 -98840186 - AluSq SINE Alu -19 294 1 639 226 7 15 chr9 43433414 43433551 -98837893 + FRAM SINE Alu 1 136 -40 221 197 14 0 chr9 43433610 43433681 -98837763 + GA-rich Low_complexity Low_complexity 3 74 0 2429 230 47 66 chr9 43433697 43434963 -98836481 + L1M1 LINE L1 2598 3825 -3740 2400 93 0 13 chr9 43434963 43435276 -98836168 + AluSg SINE Alu 1 309 -1 2429 230 47 66 chr9 43435276 43435683 -98835761 + L1M1 LINE L1 3825 4238 -3327 21 0 0 0 chr9 43435808 43435829 -98835615 + AT_rich Low_complexity Low_complexity 1 21 0 2331 110 0 3 chr9 43436127 43436437 -98835007 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 43437884 43437924 -98833520 + AT_rich Low_complexity Low_complexity 1 40 0 17792 65 4 5 chr9 43438355 43440874 -98830570 + L1P LINE L1 951 3466 -2680 302 0 0 26 chr9 43440977 43441016 -98830428 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 43441277 43441305 -98830139 + AT_rich Low_complexity Low_complexity 1 28 0 1269 191 141 0 chr9 43442632 43442888 -98828556 + AluJb SINE Alu 1 292 -10 492 18 0 0 chr9 43445093 43445150 -98826294 + (TG)n Simple_repeat Simple_repeat 1 57 0 1773 276 56 7 chr9 43446997 43447877 -98823567 - L1MEc LINE L1 -3164 3051 2172 756 155 20 0 chr9 43449519 43449667 -98821777 - L1MB3 LINE L1 -4 6179 6029 312 269 9 9 chr9 43449942 43450050 -98821394 + (TA)n Simple_repeat Simple_repeat 1 108 0 1821 62 0 9 chr9 43450805 43451030 -98820414 + AluY SINE Alu 87 309 -2 490 88 11 11 chr9 43451590 43451681 -98819763 + (GA)n Simple_repeat Simple_repeat 2 92 0 184 267 100 0 chr9 43452575 43452635 -98818809 + MIR SINE MIR 178 243 -19 1414 207 99 14 chr9 43453531 43453884 -98817560 - MLT1B LTR MaLR -4 386 4 268 119 45 0 chr9 43454983 43455050 -98816394 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 281 346 33 25 chr9 43455309 43455605 -98815839 + L2 LINE L2 2791 3090 -223 213 214 0 0 chr9 43455705 43455747 -98815697 + L2 LINE L2 3241 3282 -31 196 239 104 0 chr9 43456059 43456126 -98815318 - MIR SINE MIR -83 179 106 204 338 14 14 chr9 43456183 43456257 -98815187 - MIR SINE MIR -105 103 30 454 204 259 27 chr9 43456281 43456466 -98814978 + MIR SINE MIR 40 262 0 1348 199 10 70 chr9 43456485 43456723 -98814721 - AluJo SINE Alu -15 297 79 1723 104 0 0 chr9 43456723 43456953 -98814491 + AluSg/x SINE Alu 72 301 -9 1348 199 10 70 chr9 43456953 43457015 -98814429 - AluJo SINE Alu -233 79 15 35755 62 10 6 chr9 43457289 43458062 -98813382 + L1PA5 LINE L1 405 1174 -4980 318 23 0 0 chr9 43458062 43458106 -98813338 + L1PA2 LINE L1 6110 6153 -2 35755 62 10 6 chr9 43458106 43463056 -98808388 + L1PA5 LINE L1 1174 6148 -6 1494 192 45 24 chr9 43463244 43463577 -98807867 - MER2 DNA MER2_type -4 340 1 2285 104 13 0 chr9 43463971 43464279 -98807165 - AluSq SINE Alu -1 312 1 2778 182 10 11 chr9 43464641 43465162 -98806282 + MER44D DNA MER2_type 1 575 -30 436 134 268 0 chr9 43466087 43466199 -98805245 - L1MB1 LINE L1 -19 6170 6029 1445 181 16 23 chr9 43466206 43466510 -98804934 + L1M3 LINE L1 5484 5785 -383 26 0 0 0 chr9 43468260 43468286 -98803158 + AT_rich Low_complexity Low_complexity 1 26 0 194 88 0 29 chr9 43468381 43468415 -98803029 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 27 29 0 0 chr9 43468490 43468524 -98802920 + AT_rich Low_complexity Low_complexity 1 34 0 267 167 0 0 chr9 43468829 43468877 -98802567 + Alu SINE Alu 1 48 -254 320 204 157 9 chr9 43469026 43469134 -98802310 - L1MB1 LINE L1 0 6168 6045 1187 220 16 23 chr9 43469148 43469452 -98801992 + L1M3 LINE L1 5484 5785 -383 29 0 0 0 chr9 43471208 43471237 -98800207 + AT_rich Low_complexity Low_complexity 1 29 0 276 30 0 0 chr9 43471456 43471489 -98799955 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 295 129 0 57 chr9 43472201 43472271 -98799173 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 349 284 29 10 chr9 43473381 43473483 -98797961 - MER5B DNA MER1_type 0 178 75 1788 173 13 7 chr9 43473617 43473918 -98797526 - AluJb SINE Alu -6 306 4 655 288 29 0 chr9 43474437 43474607 -98796837 - MIR SINE MIR -74 188 14 256 159 16 16 chr9 43474890 43474953 -98796491 + GA-rich Low_complexity Low_complexity 2 64 0 3976 119 34 0 chr9 43476424 43477038 -98794406 - MER41B LTR ERV1 0 635 1 292 224 26 0 chr9 43478150 43478226 -98793218 - MER116 DNA Mariner 0 80 3 327 49 0 0 chr9 43479074 43479115 -98792329 + (TA)n Simple_repeat Simple_repeat 2 42 0 240 257 59 10 chr9 43479154 43479255 -98792189 - L1MB1 LINE L1 -290 5884 5779 708 296 57 6 chr9 43479608 43479839 -98791605 + MIR SINE MIR 5 244 -18 294 233 22 11 chr9 43480032 43480122 -98791322 - L1MB1 LINE L1 -2312 5473 5383 2302 69 0 0 chr9 43480127 43480433 -98791011 - AluY SINE Alu 0 311 6 264 281 65 43 chr9 43480722 43480861 -98790583 - L1P LINE L1 -1101 5045 4904 2163 117 0 13 chr9 43480993 43481293 -98790151 - AluSx SINE Alu -16 296 1 800 132 72 6 chr9 43481379 43481546 -98789898 - L1MA8 LINE L1 -2 6289 6112 420 259 80 0 chr9 43481649 43481761 -98789683 + MIR SINE MIR 124 244 -18 310 212 5 25 chr9 43481955 43482046 -98789398 - L1MC/D LINE L1 -674 5447 5380 2244 87 0 0 chr9 43482049 43482364 -98789080 - AluY SINE Alu 0 320 6 287 303 0 28 chr9 43482678 43482787 -98788657 - L1P LINE L1 -1137 5009 4904 2060 127 0 13 chr9 43482919 43483218 -98788226 - AluSx SINE Alu -17 295 1 14120 182 33 36 chr9 43483304 43485319 -98786125 - L1MA8 LINE L1 -2 7708 5689 1617 176 32 7 chr9 43485319 43485603 -98785841 - AluJb SINE Alu -21 291 1 14120 182 33 36 chr9 43485603 43487017 -98784427 - L1MA8 LINE L1 -2021 5689 4272 2120 116 20 0 chr9 43487017 43487318 -98784126 - AluSc SINE Alu -2 307 1 14120 182 33 36 chr9 43487318 43487753 -98783691 - L1MA8 LINE L1 -3438 4272 3837 2293 90 0 13 chr9 43487753 43488052 -98783392 - AluSg SINE Alu -15 295 1 14120 182 33 36 chr9 43488052 43489318 -98782126 - L1MA8 LINE L1 -3873 3837 2598 287 169 14 0 chr9 43489334 43489405 -98782039 + CT-rich Low_complexity Low_complexity 3 74 0 676 257 0 0 chr9 43489456 43489592 -98781852 - FRAM SINE Alu -40 136 1 782 229 83 9 chr9 43489593 43489929 -98781515 - L1M3c LINE L1 -4572 2465 2105 754 170 115 6 chr9 43489945 43490110 -98781334 - MSTD LTR MaLR -59 337 155 245 114 0 0 chr9 43490108 43490143 -98781301 - MSTD LTR MaLR -361 35 1 * 5534 143 19 6 chr9 43490164 43491635 -98779809 - L1PA16 LINE L1 -5 6161 4675 346 237 108 0 chr9 43491663 43491756 -98779688 - L1M3c LINE L1 -6922 108 6 229 263 0 0 chr9 43491832 43491889 -98779555 - L1M4 LINE L1 -1569 4577 4521 2203 90 35 7 chr9 43492130 43492420 -98779024 - AluSq SINE Alu -9 304 7 24 0 0 0 chr9 43492954 43492978 -98778466 + AT_rich Low_complexity Low_complexity 1 24 0 277 308 192 0 chr9 43493159 43493315 -98778129 - MIR SINE MIR -1 261 76 186 343 60 0 chr9 43494663 43494730 -98776714 - MIR SINE MIR -121 141 71 837 120 20 7 chr9 43495019 43495169 -98776275 - L1MB3 LINE L1 -3 6180 6029 235 180 20 0 chr9 43495447 43495497 -98775947 + (TA)n Simple_repeat Simple_repeat 2 52 0 201 74 0 0 chr9 43495521 43495548 -98775896 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr9 43495548 43495575 -98775869 + AT_rich Low_complexity Low_complexity 1 27 0 204 324 127 0 chr9 43496991 43497137 -98774307 - L2 LINE L2 -264 3049 2885 519 291 53 93 chr9 43497323 43497698 -98773746 - L2 LINE L2 -658 2656 2297 708 268 113 26 chr9 43498503 43498813 -98772631 - MER46C DNA MER2_type 0 338 2 2157 100 25 0 chr9 43499559 43499880 -98771564 + L1MA2 LINE L1 5976 6304 0 197 274 48 0 chr9 43500538 43500600 -98770844 - L2 LINE L2 -2 3270 3206 1359 210 107 62 chr9 43500606 43501044 -98770400 - MLT1C LTR MaLR -4 463 6 871 102 0 8 chr9 43501542 43501713 -98769731 - AluSp/q SINE Alu 0 336 167 2089 130 0 34 chr9 43501853 43502176 -98769268 + AluSx SINE Alu 1 312 0 23 54 0 0 chr9 43502395 43502432 -98769012 + AT_rich Low_complexity Low_complexity 1 37 0 465 218 73 0 chr9 43503266 43503376 -98768068 + L1MA8 LINE L1 5914 6031 -260 203 136 23 23 chr9 43504171 43504215 -98767229 + (TA)n Simple_repeat Simple_repeat 1 44 0 204 336 33 33 chr9 43504801 43504923 -98766521 + L3 LINE CR1 597 718 -859 2059 119 0 0 chr9 43505227 43505542 -98765902 - AluSc SINE Alu 0 315 1 206 136 23 0 chr9 43507681 43507725 -98763719 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2270 275 39 7 chr9 43508504 43509394 -98762050 + L1MEc LINE L1 2172 3051 -3164 584 214 40 0 chr9 43510873 43510999 -98760445 - L1MD2 LINE L1 -19 6340 6210 266 265 179 26 chr9 43511037 43511154 -98760290 - L1ME1 LINE L1 -90 6076 5942 * 503 206 96 14 chr9 43511152 43511298 -98760146 - L1MDa LINE L1 -6363 177 20 1015 179 17 125 chr9 43511602 43511716 -98759728 - L1ME1 LINE L1 -334 5832 5707 2105 141 36 28 chr9 43511716 43512077 -98759367 - THE1B LTR MaLR 0 364 1 1015 179 17 125 chr9 43512077 43512156 -98759288 - L1ME1 LINE L1 -459 5707 5621 1880 139 10 23 chr9 43512156 43512458 -98758986 - AluSx SINE Alu -14 298 1 1015 179 17 125 chr9 43512458 43512614 -98758830 - L1ME1 LINE L1 -545 5621 5520 1057 213 41 25 chr9 43512644 43512959 -98758485 - L1ME1 LINE L1 -1610 4536 4217 1248 284 11 11 chr9 43512982 43513341 -98758103 + LTR40c LTR ERVL 5 363 -102 297 228 87 11 chr9 43513344 43513436 -98758008 - L1ME LINE L1 -676 5490 5392 * 1093 252 143 49 chr9 43513434 43514045 -98757399 + L1ME2 LINE L1 5488 6163 -1 1183 146 0 6 chr9 43514647 43514825 -98756619 + AluSq SINE Alu 3 179 -134 251 286 43 0 chr9 43514846 43514916 -98756528 + GA-rich Low_complexity Low_complexity 6 78 0 180 0 0 0 chr9 43514917 43514937 -98756507 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 353 296 0 22 chr9 43516294 43516473 -98754971 + (TA)n Simple_repeat Simple_repeat 2 176 0 241 174 0 0 chr9 43516502 43516548 -98754896 - LTR66 LTR ERVL -171 439 394 204 40 0 0 chr9 43516585 43516610 -98754834 + (CA)n Simple_repeat Simple_repeat 2 26 0 300 253 58 0 chr9 43516698 43516785 -98754659 - L1MC4 LINE L1 -1337 6705 6614 707 120 0 0 chr9 43517733 43517841 -98753603 - L1MA2 LINE L1 0 6304 6197 207 0 0 0 chr9 43517929 43517952 -98753492 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2140 68 21 21 chr9 43518802 43519117 -98752327 + AluSg SINE Alu 2 316 0 1881 147 55 0 chr9 43519189 43519535 -98751909 - L1MB3 LINE L1 -1 6182 5818 341 229 24 0 chr9 43519547 43519630 -98751814 - L1MB3 LINE L1 -411 5772 5688 674 213 20 87 chr9 43519637 43519832 -98751612 - MIR SINE MIR -48 214 31 349 219 21 31 chr9 43520006 43520102 -98751342 + MER58C DNA MER1_type 24 118 -97 1676 204 0 7 chr9 43520111 43520419 -98751025 + AluJo SINE Alu 1 306 -6 317 214 0 12 chr9 43520426 43520510 -98750934 + GA-rich Low_complexity Low_complexity 3 85 0 406 240 39 0 chr9 43520514 43520618 -98750826 + MER58C DNA MER1_type 106 213 -2 2367 164 24 19 chr9 43520628 43521096 -98750348 - L1MA7 LINE L1 0 6291 5822 872 91 15 23 chr9 43522662 43522794 -98748650 - FLAM_C SINE Alu -2 131 1 2397 63 0 60 chr9 43524034 43524365 -98747079 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 43525575 43525596 -98745848 + AT_rich Low_complexity Low_complexity 1 21 0 1819 117 53 0 chr9 43527543 43527851 -98743593 + AluSc SINE Alu 1 322 0 21 0 0 0 chr9 43529170 43529191 -98742253 + AT_rich Low_complexity Low_complexity 1 21 0 2036 108 0 57 chr9 43529191 43529507 -98741937 + AluY SINE Alu 1 298 -13 580 193 0 93 chr9 43530636 43530797 -98740647 - L1ME1 LINE L1 -8 6158 6013 241 381 68 7 chr9 43532858 43533005 -98738439 + L2 LINE L2 3109 3264 -8 2152 126 0 0 chr9 43533450 43533752 -98737692 + AluY SINE Alu 4 305 -6 283 353 172 0 chr9 43534850 43534972 -98736472 - L2 LINE L2 -3 3269 3127 627 268 50 42 chr9 43535451 43535904 -98735540 + MLT1D LTR MaLR 7 505 0 192 77 0 0 chr9 43536282 43536308 -98735136 + (A)n Simple_repeat Simple_repeat 1 26 0 267 281 28 28 chr9 43536782 43536960 -98734484 + MLT1K LTR MaLR 88 265 -323 576 252 48 0 chr9 43537015 43537162 -98734282 - L2 LINE L2 0 3313 3160 312 312 208 9 chr9 43537217 43537438 -98734006 + MLT1K LTR MaLR 309 573 -15 187 350 21 57 chr9 43537712 43537906 -98733538 + L2 LINE L2 2738 2924 -390 1101 70 6 38 chr9 43538650 43538808 -98732636 - AluYb8 SINE Alu -165 153 1 1711 85 15 0 chr9 43539440 43539700 -98731744 + L1MA1 LINE L1 6039 6302 0 26 0 0 0 chr9 43539702 43539728 -98731716 + AT_rich Low_complexity Low_complexity 1 26 0 1773 139 0 0 chr9 43540571 43540823 -98730621 + AluSg SINE Alu 45 296 -14 611 85 0 0 chr9 43541011 43541093 -98730351 + L1PA4 LINE L1 7 88 -6058 31830 51 37 34 chr9 43541093 43546613 -98724831 + L1PA4 LINE L1 617 6152 -3 254 331 108 16 chr9 43546727 43546978 -98724466 + LTR16C LTR ERVL 169 442 -49 1305 175 59 20 chr9 43547450 43547753 -98723691 - LTR40b LTR ERVL 0 462 148 24 0 0 0 chr9 43548186 43548210 -98723234 + AT_rich Low_complexity Low_complexity 1 24 0 629 253 146 0 chr9 43550689 43550922 -98720522 - L1MC4 LINE L1 -180 7862 7596 610 103 0 0 chr9 43551302 43551389 -98720055 - AluSg/x SINE Alu -10 300 214 1143 111 6 12 chr9 43551389 43551551 -98719893 - AluSq SINE Alu -152 161 1 2409 70 0 23 chr9 43552201 43552503 -98718941 - AluSq SINE Alu -18 295 1 22 0 0 0 chr9 43553885 43553907 -98717537 + GC_rich Low_complexity Low_complexity 1 22 0 309 210 153 51 chr9 43554369 43554526 -98716918 - MER96B DNA MER1_type? -244 173 1 2104 85 24 3 chr9 43555215 43555508 -98715936 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr9 43556301 43556329 -98715115 + AT_rich Low_complexity Low_complexity 1 28 0 1970 141 0 16 chr9 43556688 43556993 -98714451 - AluSx SINE Alu -12 300 1 27 29 0 0 chr9 43558255 43558289 -98713155 + AT_rich Low_complexity Low_complexity 1 34 0 2320 110 0 3 chr9 43558591 43558901 -98712543 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 43560349 43560389 -98711055 + AT_rich Low_complexity Low_complexity 1 40 0 1301 99 10 20 chr9 43560806 43560980 -98710464 - AluY SINE Alu -7 304 131 383 0 21 0 chr9 43560980 43561027 -98710417 + (TG)n Simple_repeat Simple_repeat 2 49 0 1301 99 10 20 chr9 43561027 43561053 -98710391 - AluY SINE Alu -180 131 106 262 0 0 0 chr9 43561055 43561091 -98710353 - AluY SINE Alu -130 171 136 441 0 0 0 chr9 43561091 43561140 -98710304 + (TG)n Simple_repeat Simple_repeat 2 50 0 2324 69 10 0 chr9 43561141 43561432 -98710012 - AluY SINE Alu -17 294 1 2081 130 7 0 chr9 43561658 43561957 -98709487 + AluSx SINE Alu 1 301 -11 3652 117 71 23 chr9 43561968 43562195 -98709249 + L1PA15 LINE L1 5522 5737 -428 2274 88 0 0 chr9 43562195 43562500 -98708944 + AluY SINE Alu 1 305 -6 3652 117 71 23 chr9 43562500 43562880 -98708564 + L1PA15 LINE L1 5737 6158 -7 334 317 148 0 chr9 43562964 43563106 -98708338 + MIR SINE MIR 74 236 -26 2021 258 64 27 chr9 43563221 43564278 -98707166 + L1MEc LINE L1 1562 2617 -3598 2283 103 0 3 chr9 43564278 43564580 -98706864 - AluSq SINE Alu -12 301 1 2021 258 64 27 chr9 43564580 43564812 -98706632 + L1MEc LINE L1 2617 2839 -3376 1741 231 26 30 chr9 43565603 43566133 -98705311 + L1M4 LINE L1 794 1323 -5061 2942 141 103 6 chr9 43566133 43566638 -98704806 + MER41C LTR ERV1 1 554 0 1741 231 26 30 chr9 43566638 43566717 -98704727 + L1M4 LINE L1 1323 1401 -4983 266 266 0 0 chr9 43566738 43566802 -98704642 + L1M4 LINE L1 1595 1658 -4726 * 4913 208 67 48 chr9 43566798 43567037 -98704407 + L1MC2 LINE L1 17 250 -6176 2161 128 10 0 chr9 43567037 43567342 -98704102 + AluSq SINE Alu 1 308 -5 4913 208 67 48 chr9 43567342 43569635 -98701809 + L1MC2 LINE L1 250 2575 -3851 1148 194 35 10 chr9 43569830 43570118 -98701326 + LTR43 LTR ERV1 176 470 -132 5211 235 47 81 chr9 43570200 43572737 -98698707 + L1MC2 LINE L1 2564 5014 -1412 1757 189 53 7 chr9 43572736 43573154 -98698290 + L1MC2 LINE L1 6187 6623 -1 * 1228 260 36 4 chr9 43573159 43573636 -98697808 + L1M4 LINE L1 2398 2889 -3493 452 266 18 50 chr9 43573640 43573816 -98697628 + L1M4c LINE L1 1491 1660 -4724 2477 70 0 0 chr9 43573816 43574115 -98697329 + AluY SINE Alu 1 299 -12 452 266 18 50 chr9 43574115 43574156 -98697288 + L1M4c LINE L1 1660 1701 -4683 4587 83 15 0 chr9 43574580 43575341 -98696103 + L1P3 LINE L1 4692 5461 -711 2421 45 7 7 chr9 43575364 43575672 -98695772 - AluY SINE Alu -3 308 1 903 116 177 22 chr9 43575672 43575853 -98695591 + THE1B LTR MaLR 156 364 0 907 250 68 27 chr9 43575855 43576647 -98694797 + L1M4c LINE L1 2616 3631 -2751 250 146 55 0 chr9 43576668 43576723 -98694721 + L1M4c LINE L1 3784 3841 -2541 1490 219 50 50 chr9 43576726 43577205 -98694239 + L1MB8 LINE L1 5694 6172 -6 276 259 35 65 chr9 43577713 43577883 -98693561 + L1M4 LINE L1 3180 3344 -3038 2264 89 0 0 chr9 43577994 43578286 -98693158 - AluSc SINE Alu -17 292 1 652 234 30 52 chr9 43578663 43578921 -98692523 + L1MC4 LINE L1 7803 7995 0 1732 185 25 48 chr9 43579432 43579908 -98691536 - L1MA7 LINE L1 0 6291 5827 2384 192 35 79 chr9 43579920 43580695 -98690749 - L1 LINE L1 -2777 3369 2629 2466 68 3 3 chr9 43580724 43581034 -98690410 - AluY SINE Alu -1 310 1 23 78 0 0 chr9 43581086 43581137 -98690307 + AT_rich Low_complexity Low_complexity 1 51 0 24 77 0 0 chr9 43581754 43581806 -98689638 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 43582457 43582479 -98688965 + (T)n Simple_repeat Simple_repeat 1 22 0 1493 178 70 13 chr9 43582613 43582928 -98688516 + THE1C LTR MaLR 43 375 0 10661 106 38 46 chr9 43582928 43583058 -98688386 + THE1C-int LTR MaLR 1 130 -1450 2108 118 3 3 chr9 43583058 43583363 -98688081 + AluSq SINE Alu 5 309 -4 10661 106 38 46 chr9 43583363 43584824 -98686620 + THE1C-int LTR MaLR 130 1580 0 2307 128 56 14 chr9 43584824 43585184 -98686260 + THE1C LTR MaLR 1 375 0 766 150 0 0 chr9 43585547 43585690 -98685754 - AluSc SINE Alu 0 310 168 2063 171 31 51 chr9 43586315 43586765 -98684679 + MER66B LTR ERV1 46 486 0 325 290 131 9 chr9 43587735 43587842 -98683602 + MIR3 SINE MIR 14 133 -75 293 289 104 38 chr9 43588847 43589165 -98682279 - L1ME3A LINE L1 -222 5948 5610 2262 109 3 0 chr9 43589265 43589567 -98681877 - AluY SINE Alu -8 303 1 203 332 129 17 chr9 43589639 43589871 -98681573 - L2 LINE L2 -128 3185 2928 982 217 9 19 chr9 43589915 43590127 -98681317 + Tigger6a DNA MER2_type 2 211 -872 1704 224 41 37 chr9 43590127 43590586 -98680858 - MLT1C LTR MaLR 0 467 7 * 3530 184 93 33 chr9 43590573 43591195 -98680249 + Tigger6a DNA MER2_type 216 900 -697 1968 112 47 0 chr9 43591195 43591473 -98679971 + AluY SINE Alu 3 293 -18 3530 184 93 33 chr9 43591473 43591669 -98679775 + Tigger6a DNA MER2_type 900 1083 0 1632 176 39 73 chr9 43592190 43592486 -98678958 - MER67B LTR ERV1 -108 452 272 2142 115 24 0 chr9 43592486 43592782 -98678662 - AluSc SINE Alu -6 303 1 1632 176 39 73 chr9 43592782 43593046 -98678398 - MER67B LTR ERV1 -288 272 1 32 67 0 0 chr9 43593457 43593517 -98677927 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr9 43593554 43593575 -98677869 + AT_rich Low_complexity Low_complexity 1 21 0 838 119 147 0 chr9 43593707 43593850 -98677594 + AluSg/x SINE Alu 121 284 -28 21 0 0 0 chr9 43594138 43594159 -98677285 + AT_rich Low_complexity Low_complexity 1 21 0 1486 218 65 27 chr9 43594204 43594607 -98676837 + MER67B LTR ERV1 1 418 -243 2051 120 0 0 chr9 43596473 43596749 -98674695 - AluSc SINE Alu -33 276 1 279 234 65 42 chr9 43597343 43597498 -98673946 - L1M4 LINE L1 -1090 5056 4911 245 257 40 0 chr9 43597667 43597741 -98673703 - L1M4 LINE L1 -1437 4709 4633 * 614 273 105 28 chr9 43597740 43597910 -98673534 - L1M4 LINE L1 -2042 4104 3949 2271 90 0 10 chr9 43597910 43598209 -98673235 - AluY SINE Alu -15 296 1 614 273 105 28 chr9 43598209 43598401 -98673043 - L1M4 LINE L1 -2197 3949 3714 264 316 51 6 chr9 43598503 43598661 -98672783 - L1M4 LINE L1 -2607 3539 3375 401 225 121 44 chr9 43598681 43598863 -98672581 - L1ME3A LINE L1 -11 6159 5964 2430 69 0 10 chr9 43598955 43599258 -98672186 - AluY SINE Alu -11 300 1 229 150 0 0 chr9 43599300 43599340 -98672104 - LTR66 LTR ERVL -173 437 398 4832 144 68 25 chr9 43599342 43599813 -98671631 - L1MC1 LINE L1 -11 6322 5873 205 27 81 0 chr9 43599813 43599850 -98671594 + T-rich Low_complexity Low_complexity 1 40 0 2018 95 0 18 chr9 43599850 43600134 -98671310 - AluY SINE Alu -32 279 1 4832 144 68 25 chr9 43600134 43600512 -98670932 - L1MC1 LINE L1 -459 5874 5435 661 246 156 60 chr9 43600530 43601206 -98670238 - L1ME3A LINE L1 -329 5841 5106 2193 74 10 17 chr9 43601230 43601527 -98669917 + AluY SINE Alu 1 295 -16 729 168 25 0 chr9 43601790 43601909 -98669535 - LTR12 LTR ERV1 -234 480 359 225 258 0 0 chr9 43601914 43601980 -98669464 - LTR30 LTR ERV1 -104 618 553 643 116 45 95 chr9 43601981 43602216 -98669228 - LTR12 LTR ERV1 -429 285 1 305 318 127 62 chr9 43602225 43602691 -98668753 - L1MEd LINE L1 -5560 559 64 22 0 0 0 chr9 43603404 43603426 -98668018 + AT_rich Low_complexity Low_complexity 1 22 0 2877 19 0 0 chr9 43603750 43604065 -98667379 - AluYb8 SINE Alu -3 315 1 993 116 177 22 chr9 43604065 43604246 -98667198 + THE1B LTR MaLR 156 364 0 773 243 69 32 chr9 43604248 43605116 -98666328 + L1MB8 LINE L1 2380 3605 -2541 1667 216 49 55 chr9 43605119 43605606 -98665838 + L1MB8 LINE L1 5694 6177 -1 339 259 35 65 chr9 43606106 43606276 -98665168 + L1M4 LINE L1 2944 3108 -3038 2277 89 0 0 chr9 43606387 43606679 -98664765 - AluSc SINE Alu -17 292 1 758 234 30 52 chr9 43607056 43607314 -98664130 + L1MC4 LINE L1 7803 7995 0 992 194 0 0 chr9 43608321 43608486 -98662958 - AluJb SINE Alu -15 297 133 1879 124 0 4 chr9 43608501 43608767 -98662677 + AluSc SINE Alu 35 299 -10 2286 91 17 0 chr9 43609546 43609843 -98661601 + AluSx SINE Alu 5 306 -6 809 86 17 0 chr9 43609980 43610096 -98661348 - AluY SINE Alu -4 307 190 2274 109 0 3 chr9 43610333 43610644 -98660800 + AluY SINE Alu 1 310 -1 2417 91 0 3 chr9 43610902 43611211 -98660233 + AluSc SINE Alu 1 308 -1 248 305 96 5 chr9 43612629 43612816 -98658628 - HAL1 LINE L1 -814 1693 1490 408 318 56 13 chr9 43612835 43613068 -98658376 + HAL1 LINE L1 1491 1733 -774 1526 191 3 7 chr9 43613752 43614059 -98657385 + AluSx SINE Alu 1 306 0 4965 143 50 32 chr9 43614269 43614787 -98656657 - L1MA9 LINE L1 0 6312 5768 246 32 0 0 chr9 43614787 43614818 -98656626 + (TG)n Simple_repeat Simple_repeat 2 32 0 4965 143 50 32 chr9 43614818 43615263 -98656181 - L1MA9 LINE L1 -544 5768 5332 2063 161 42 31 chr9 43615263 43615623 -98655821 + THE1B LTR MaLR 1 364 0 11446 128 9 0 chr9 43615623 43617189 -98654255 + THE1B-int LTR MaLR 1 1580 0 2170 147 35 46 chr9 43617189 43617485 -98653959 + THE1B LTR MaLR 1 294 -70 2240 110 0 0 chr9 43617485 43617775 -98653669 - AluY SINE Alu -21 290 1 2170 147 35 46 chr9 43617775 43617846 -98653598 + THE1B LTR MaLR 294 364 0 4596 212 63 17 chr9 43617856 43618715 -98652729 - L1MA9 LINE L1 -857 5289 4366 1898 99 91 0 chr9 43618715 43618978 -98652466 - AluY SINE Alu -24 287 1 4596 212 63 17 chr9 43618978 43619234 -98652210 - L1MA9 LINE L1 -1780 4366 4123 5662 216 83 32 chr9 43619251 43619622 -98651822 + L1MCa LINE L1 1773 2124 -4302 2037 184 24 0 chr9 43619622 43619958 -98651486 - MER7A DNA MER2_type -1 345 4 5662 216 83 32 chr9 43619958 43621206 -98650238 + L1MCa LINE L1 2124 3552 -2874 2003 94 25 0 chr9 43621206 43621516 -98649928 + AluY SINE Alu 1 317 0 5662 216 83 32 chr9 43621516 43621953 -98649491 + L1MCa LINE L1 3552 3965 -2461 14576 137 28 15 chr9 43622076 43624423 -98647021 + Tigger1 DNA MER2_type 1 2377 -41 296 163 0 0 chr9 43624640 43624683 -98646761 + Tigger1 DNA MER2_type 2375 2417 -1 2202 250 58 42 chr9 43624841 43625569 -98645875 + L1M2 LINE L1 2 1126 -5722 4094 86 17 0 chr9 43625573 43626099 -98645345 + L1PA10 LINE L1 5629 6163 -5 326 169 11 0 chr9 43626566 43626655 -98644789 + C-rich Low_complexity Low_complexity 3 92 0 315 0 0 0 chr9 43627527 43627562 -98643882 + (TG)n Simple_repeat Simple_repeat 2 36 0 1947 128 11 3 chr9 43627588 43627924 -98643520 - AluSx SINE Alu 0 338 1 2030 142 3 0 chr9 43634129 43634424 -98637020 - AluSq SINE Alu -17 296 1 2198 110 3 10 chr9 43636805 43637105 -98634339 - AluSx SINE Alu -14 298 1 21 36 0 0 chr9 43638133 43638161 -98633283 + AT_rich Low_complexity Low_complexity 1 28 0 2218 104 0 22 chr9 43638248 43638565 -98632879 - AluY SINE Alu -1 310 1 2272 82 3 28 chr9 43639989 43640308 -98631136 + AluY SINE Alu 1 311 0 199 256 256 22 chr9 43640674 43640811 -98630633 + MIR SINE MIR 21 189 -73 2253 101 10 7 chr9 43640936 43641242 -98630202 + AluSq SINE Alu 1 307 -6 399 315 78 17 chr9 43641782 43642014 -98629430 - MER41B LTR ERV1 -209 426 181 549 108 0 0 chr9 43643374 43643448 -98627996 - MLT1B LTR MaLR 0 390 317 3158 42 5 23 chr9 43643466 43643852 -98627592 - L1PA3 LINE L1 0 6155 5777 1773 172 12 15 chr9 43643852 43644184 -98627260 - MLT1B LTR MaLR -59 331 1 2233 114 0 10 chr9 43644238 43644546 -98626898 + AluSq SINE Alu 1 305 -8 414 0 0 0 chr9 43644891 43644937 -98626507 + (TA)n Simple_repeat Simple_repeat 2 47 0 3232 132 31 19 chr9 43645841 43645953 -98625491 - L1MA8 LINE L1 -172 6119 6008 1665 263 98 21 chr9 43645953 43646618 -98624826 - L1PA8A LINE L1 -123 6008 5293 1246 173 235 12 chr9 43646964 43647288 -98624156 + MSTD LTR MaLR 1 396 0 2334 190 7 17 chr9 43647341 43647757 -98623687 - LOR1b LTR ERV1 0 461 50 292 323 10 50 chr9 43647818 43647917 -98623527 - L2 LINE L2 -42 3230 3136 2446 89 0 0 chr9 43648159 43648461 -98622983 + AluSg SINE Alu 1 302 -8 1889 248 105 40 chr9 43648461 43649119 -98622325 + L1ME1 LINE L1 5462 6162 -4 206 143 61 0 chr9 43649132 43649181 -98622263 + (TA)n Simple_repeat Simple_repeat 2 53 0 2318 58 24 17 chr9 43649216 43649509 -98621935 - AluY SINE Alu -16 295 1 251 346 94 24 chr9 43649783 43649910 -98621534 - L2 LINE L2 0 3272 3137 2457 77 0 3 chr9 43650426 43650726 -98620718 + AluY SINE Alu 1 299 -12 2059 120 41 0 chr9 43652184 43652475 -98618969 + AluSp SINE Alu 1 303 -10 473 273 165 6 chr9 43652602 43652778 -98618666 + MIR SINE MIR 59 262 0 1999 190 14 11 chr9 43652956 43653320 -98618124 - MLT1A1 LTR MaLR 0 365 1 274 150 0 67 chr9 43653636 43653696 -98617748 + L1MB7 LINE L1 6128 6183 -1 5714 124 22 4 chr9 43653953 43654797 -98616647 - Tigger1 DNA MER2_type -1554 864 5 2396 86 10 0 chr9 43654798 43655102 -98616342 + AluSp SINE Alu 1 307 -6 1488 243 18 47 chr9 43655109 43655668 -98615776 + L1M4 LINE L1 3087 3629 -2517 23 0 0 0 chr9 43656424 43656447 -98614997 + AT_rich Low_complexity Low_complexity 1 23 0 2072 110 13 7 chr9 43657702 43658002 -98613442 - AluSx SINE Alu -10 302 1 2373 82 0 0 chr9 43658258 43658562 -98612882 + AluSx SINE Alu 5 308 -4 2336 97 0 3 chr9 43658562 43658871 -98612573 + AluSc SINE Alu 1 308 -1 2041 70 59 7 chr9 43659279 43659581 -98611863 + AluY SINE Alu 1 316 0 2221 117 0 3 chr9 43659587 43659887 -98611557 + AluSx SINE Alu 1 299 -13 332 319 200 42 chr9 43661314 43661733 -98609711 - L3 LINE CR1 -227 1350 999 2253 98 3 13 chr9 43661733 43662039 -98609405 - AluSg SINE Alu -7 303 1 332 319 200 42 chr9 43662039 43662264 -98609180 - L3 LINE CR1 -578 999 604 5066 225 37 51 chr9 43662743 43662922 -98608522 + L1M4 LINE L1 3776 3956 -2190 1987 132 3 38 chr9 43662922 43663241 -98608203 + AluSg SINE Alu 1 308 -2 5066 225 37 51 chr9 43663241 43663485 -98607959 + L1M4 LINE L1 3956 4202 -1944 2453 84 0 0 chr9 43663485 43663795 -98607649 + AluY SINE Alu 1 310 -1 5066 225 37 51 chr9 43663795 43664948 -98606496 + L1M4 LINE L1 4202 5330 -816 2224 111 0 0 chr9 43664949 43665246 -98606198 + AluSg SINE Alu 1 297 -13 1657 69 0 28 chr9 43665766 43665984 -98605460 - AluY SINE Alu -2 309 98 323 118 39 0 chr9 43666085 43666136 -98605308 - Tigger1 DNA MER2_type -2321 97 45 1407 186 8 12 chr9 43666136 43666383 -98605061 + AluSx SINE Alu 1 246 -66 362 250 64 104 chr9 43666448 43666514 -98604930 + L1MDa LINE L1 813 880 -5660 2213 112 13 0 chr9 43666514 43666817 -98604627 + AluSq SINE Alu 1 307 -6 362 250 64 104 chr9 43666817 43666970 -98604474 + L1MDa LINE L1 880 1023 -5517 1337 279 138 20 chr9 43666996 43668419 -98603025 - L1M4 LINE L1 -1034 5112 3509 357 24 0 0 chr9 43668424 43668466 -98602978 + (CA)n Simple_repeat Simple_repeat 1 42 0 771 237 60 30 chr9 43668781 43669013 -98602431 + MLT1A1 LTR MaLR 127 365 0 369 265 95 45 chr9 43669022 43669222 -98602222 - L1M4 LINE L1 -2803 3343 3134 1949 119 43 0 chr9 43669277 43669555 -98601889 - AluSx SINE Alu -22 290 1 768 122 8 8 chr9 43669555 43669678 -98601766 - THE1C-int LTR MaLR -1457 123 1 1719 165 70 13 chr9 43669678 43669993 -98601451 - THE1C LTR MaLR 0 375 43 198 0 0 0 chr9 43670127 43670149 -98601295 + (A)n Simple_repeat Simple_repeat 1 22 0 24 77 0 0 chr9 43670800 43670852 -98600592 + AT_rich Low_complexity Low_complexity 1 52 0 951 236 66 18 chr9 43671562 43671896 -98599548 - L1M4 LINE L1 -3128 3018 2669 658 279 64 45 chr9 43672356 43672668 -98598776 - L1MDa LINE L1 -6189 351 34 1943 153 0 3 chr9 43672798 43673086 -98598358 + AluJo SINE Alu 1 287 -25 963 124 7 0 chr9 43677037 43677182 -98594262 - L1P LINE L1 -5314 832 687 458 117 13 26 chr9 43677692 43677769 -98593675 - L1MB8 LINE L1 0 6178 6103 1804 171 24 3 chr9 43677769 43678067 -98593377 - MER2 DNA MER2_type -41 304 1 2918 203 78 13 chr9 43678069 43678691 -98592753 - L1MB7 LINE L1 -98 6086 5415 1610 198 58 68 chr9 43678691 43679085 -98592359 - MLT1B LTR MaLR 0 390 1 2918 203 78 13 chr9 43679085 43679142 -98592302 - L1MB7 LINE L1 -769 5415 5363 2283 79 41 0 chr9 43679414 43679706 -98591738 + AluY SINE Alu 1 304 -7 321 304 114 43 chr9 43680100 43680380 -98591064 + L1M4 LINE L1 2716 3015 -3131 200 279 29 0 chr9 43680404 43680472 -98590972 + A-rich Low_complexity Low_complexity 2 71 0 723 108 185 0 chr9 43680757 43680887 -98590557 + AluY SINE Alu 2 155 -156 1739 70 58 4 chr9 43681001 43681243 -98590201 + AluY SINE Alu 53 307 -4 2180 106 17 0 chr9 43681380 43681672 -98589772 - AluSx SINE Alu -11 301 5 2144 120 0 3 chr9 43682461 43682761 -98588683 - AluSc SINE Alu -10 299 1 2426 77 0 6 chr9 43683012 43683324 -98588120 + AluY SINE Alu 1 310 -1 992 194 0 0 chr9 43683919 43684084 -98587360 - AluJb SINE Alu -15 297 133 270 179 30 30 chr9 43684473 43684540 -98586904 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2060 143 10 7 chr9 43684566 43684874 -98586570 + AluSg1 SINE Alu 1 309 0 1091 107 24 48 chr9 43685143 43685311 -98586133 + LTR1 LTR ERV1 622 785 0 297 183 7 33 chr9 43685393 43685550 -98585894 + CT-rich Low_complexity Low_complexity 1 152 0 11389 155 10 19 chr9 43685601 43687003 -98584441 + L1PA13 LINE L1 3142 4509 -1654 2339 110 0 0 chr9 43687003 43687304 -98584140 + AluSc SINE Alu 1 301 -8 11389 155 10 19 chr9 43687304 43688268 -98583176 + L1PA13 LINE L1 4509 5480 -683 265 155 113 0 chr9 43688274 43688345 -98583099 + L1M4 LINE L1 2617 2695 -3451 1537 104 0 0 chr9 43688432 43688653 -98582791 - L1PA13 LINE L1 -4 6159 5939 4020 109 32 0 chr9 43688687 43689310 -98582134 + L1PA13 LINE L1 5476 6118 -45 1244 135 69 22 chr9 43689353 43689627 -98581817 + LTR1 LTR ERV1 1 287 -498 2299 58 4 0 chr9 43689665 43689943 -98581501 - AluY SINE Alu -32 279 1 524 92 53 0 chr9 43690158 43690234 -98581210 - MADE1 DNA Mariner 0 80 1 1088 159 95 4 chr9 43690993 43691225 -98580219 - MLT1C LTR MaLR 0 467 215 1549 206 16 44 chr9 43691614 43691929 -98579515 - AluJo SINE Alu -6 306 1 2199 164 51 7 chr9 43692087 43692501 -98578943 + MSTB1 LTR MaLR 1 432 0 1553 176 0 70 chr9 43692766 43692936 -98578508 - AluJo SINE Alu 0 306 166 2810 91 3 0 chr9 43692936 43693299 -98578145 - THE1B LTR MaLR 0 364 1 1553 176 0 70 chr9 43693299 43693455 -98577989 - AluJo SINE Alu -140 166 1 2099 107 10 13 chr9 43694801 43695099 -98576345 + AluSq SINE Alu 1 297 -16 2345 103 0 3 chr9 43695649 43695961 -98575483 - AluSx SINE Alu -1 311 1 441 330 44 19 chr9 43698590 43698905 -98572539 + L1M4 LINE L1 4573 4895 -1251 23 33 0 0 chr9 43698964 43698994 -98572450 + AT_rich Low_complexity Low_complexity 1 30 0 775 297 127 49 chr9 43699136 43699549 -98571895 + L1M4 LINE L1 4470 4849 -1297 2188 74 0 45 chr9 43699549 43699884 -98571560 + AluSx SINE Alu 1 312 0 775 297 127 49 chr9 43699884 43700104 -98571340 + L1M4 LINE L1 4849 5050 -1096 2356 68 7 0 chr9 43700104 43700397 -98571047 - AluY SINE Alu -16 295 1 775 297 127 49 chr9 43700397 43700517 -98570927 + L1M4 LINE L1 5050 5283 -863 2458 67 0 0 chr9 43700693 43700993 -98570451 - AluY SINE Alu -11 300 1 370 137 42 63 chr9 43701760 43701855 -98569589 - L1MD2 LINE L1 -2 6357 6265 946 100 0 15 chr9 43702771 43702901 -98568543 - AluSc SINE Alu -181 128 1 2398 96 0 3 chr9 43703344 43703657 -98567787 + AluSx SINE Alu 1 312 0 402 220 52 14 chr9 43704456 43704619 -98566825 - L1MA10 LINE L1 -10 6315 5985 249 92 53 79 chr9 43704631 43704707 -98566737 - L1M4 LINE L1 -1690 4456 4383 1046 91 0 0 chr9 43704726 43704858 -98566586 - AluY SINE Alu -179 132 1 258 260 70 0 chr9 43704880 43704980 -98566464 - L1M4 LINE L1 -1783 4363 4257 924 234 167 21 chr9 43705012 43705396 -98566048 - L1M4 LINE L1 -1871 4275 3836 4371 168 25 11 chr9 43705403 43706304 -98565140 - L1MB1 LINE L1 -1 6167 5254 3564 197 42 2 chr9 43706305 43707131 -98564313 - L1MB1 LINE L1 -1085 5061 4203 349 247 0 0 chr9 43707857 43707946 -98563498 - L1MB1 LINE L1 -2104 4042 3954 4403 166 22 12 chr9 43708034 43708939 -98562505 - L1MB1 LINE L1 -1 6167 5254 7337 200 30 3 chr9 43708940 43710669 -98560775 - L1MB1 LINE L1 -1085 5061 3288 1772 251 44 7 chr9 43710691 43711301 -98560143 - L1MB1 LINE L1 -2291 3855 3223 626 202 113 8 chr9 43711294 43711532 -98559912 - L1MEc LINE L1 -3961 2435 2173 * 3161 138 77 45 chr9 43711582 43711895 -98559549 + MER4D LTR ERV1 1 303 -600 2192 119 0 19 chr9 43711895 43712213 -98559231 - AluSx SINE Alu 0 312 1 3161 138 77 45 chr9 43712213 43712536 -98558908 + MER4D LTR ERV1 303 657 -246 1901 181 44 29 chr9 43712585 43713123 -98558321 + MLT2A2 LTR ERVL 1 554 0 1173 177 5 0 chr9 43713124 43713333 -98558111 + MER4B LTR ERV1 399 608 -2 895 192 48 24 chr9 43713337 43713587 -98557857 - L1MEc LINE L1 -4300 2096 1841 33974 68 67 7 chr9 43713594 43719385 -98552059 + L1PA5 LINE L1 2 6141 -13 1069 278 65 46 chr9 43719408 43719956 -98551488 - L1MEc LINE L1 -4547 1849 1276 2119 139 0 3 chr9 43719956 43720259 -98551185 - AluSx SINE Alu -10 302 1 1069 278 65 46 chr9 43720259 43720617 -98550827 - L1MEc LINE L1 -5120 1276 926 * 1262 224 154 4 chr9 43720611 43721092 -98550352 - L1MCa LINE L1 -3981 2445 1893 1670 162 36 12 chr9 43721144 43721478 -98549966 - L1MB4 LINE L1 0 6180 5839 1050 208 34 0 chr9 43721478 43721714 -98549730 + MLT1B LTR MaLR 9 252 -138 2105 64 38 0 chr9 43721715 43721982 -98549462 + AluY SINE Alu 3 279 -32 216 0 0 0 chr9 43721982 43722006 -98549438 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 2071 71 0 8 chr9 43722011 43722299 -98549145 + AluY SINE Alu 41 311 0 40 37 0 0 chr9 43722534 43722588 -98548856 + AT_rich Low_complexity Low_complexity 1 54 0 429 282 8 8 chr9 43724073 43724197 -98547247 - MLT1I LTR MaLR -268 141 18 7313 184 32 21 chr9 43725298 43726664 -98544780 + L1PB4 LINE L1 3167 4559 -1587 1823 86 55 24 chr9 43726664 43726919 -98544525 + AluY SINE Alu 35 297 -14 7313 184 32 21 chr9 43726919 43727319 -98544125 + L1PB4 LINE L1 4559 4953 -1193 241 231 0 0 chr9 43727326 43727378 -98544066 + LTR30 LTR ERV1 1 52 -670 1922 139 14 99 chr9 43727401 43727817 -98543627 + LTR12 LTR ERV1 100 480 -234 3999 159 54 36 chr9 43727818 43728168 -98543276 + L1PB4 LINE L1 4957 5299 -857 1742 135 25 53 chr9 43728168 43728487 -98542957 + AluSx SINE Alu 1 310 -2 3999 159 54 36 chr9 43728487 43729297 -98542147 + L1PB4 LINE L1 5299 6156 0 2085 111 0 13 chr9 43729807 43730105 -98541339 + AluSx SINE Alu 1 294 -18 214 221 88 29 chr9 43730947 43731015 -98540429 - MIR SINE MIR -145 117 46 2024 101 42 39 chr9 43731302 43731610 -98539834 - AluSg SINE Alu -1 309 1 260 283 125 20 chr9 43731723 43731875 -98539569 + L1MC4a LINE L1 5746 5913 -1895 1634 91 0 5 chr9 43732171 43732391 -98539053 - AluSq SINE Alu -12 301 83 288 189 54 99 chr9 43732563 43732674 -98538770 + MER77 LTR ERV1 493 598 -7 1527 46 0 0 chr9 43733869 43734042 -98537402 + AluY SINE Alu 1 173 -138 2100 135 0 3 chr9 43734305 43734609 -98536835 + AluSc SINE Alu 7 309 0 361 309 90 5 chr9 43736040 43736228 -98535216 - HAL1 LINE L1 -814 1693 1490 337 317 54 13 chr9 43736247 43736471 -98534973 + HAL1 LINE L1 1491 1723 -784 2442 90 0 3 chr9 43737560 43737870 -98533574 - AluSc SINE Alu 0 309 1 2212 119 0 3 chr9 43738115 43738427 -98533017 - AluY SINE Alu 0 311 1 576 303 126 66 chr9 43739621 43740089 -98531355 + L1MEd LINE L1 64 559 -5560 1295 162 40 72 chr9 43740098 43740523 -98530921 + LTR12 LTR ERV1 1 2219 -219 21 0 0 0 chr9 43740714 43740735 -98530709 + AT_rich Low_complexity Low_complexity 1 21 0 2252 67 7 20 chr9 43740786 43741084 -98530360 - AluY SINE Alu -17 294 1 273 279 58 7 chr9 43741110 43741264 -98530180 + L1ME3A LINE L1 5108 5269 -877 543 266 93 83 chr9 43741301 43741783 -98529661 + L1ME3A LINE L1 5355 5841 -329 4493 139 64 31 chr9 43741801 43742179 -98529265 + L1MC1 LINE L1 5435 5799 -534 2228 92 0 16 chr9 43742179 43742495 -98528949 + AluY SINE Alu 1 311 0 4493 139 64 31 chr9 43742495 43742976 -98528468 + L1MC1 LINE L1 5799 6322 -11 211 215 13 25 chr9 43742976 43742993 -98528451 + (TATATG)n Simple_repeat Simple_repeat 2 18 -61 339 104 0 0 chr9 43742993 43743041 -98528403 + L1MC1 LINE L1 6269 6316 -17 211 215 13 25 chr9 43743041 43743102 -98528342 + (TATATG)n Simple_repeat Simple_repeat 18 79 0 2406 81 0 0 chr9 43743128 43743426 -98528018 + AluY SINE Alu 1 298 -13 1471 209 0 35 chr9 43743609 43743932 -98527512 - AluJo SINE Alu 0 323 11 647 229 113 75 chr9 43744160 43744492 -98526952 - L1MC5 LINE L1 -14 7947 7582 2127 109 0 53 chr9 43744492 43744814 -98526630 - AluSx SINE Alu -7 305 1 647 229 113 75 chr9 43744814 43745058 -98526386 - L1MC5 LINE L1 -379 7582 7349 977 268 92 31 chr9 43745497 43746001 -98525443 - L2 LINE L2 -165 3148 2606 201 39 0 0 chr9 43746589 43746615 -98524829 + (TG)n Simple_repeat Simple_repeat 2 27 0 2563 58 0 3 chr9 43748527 43748838 -98522606 + AluY SINE Alu 1 310 -1 2411 201 35 77 chr9 43748839 43749642 -98521802 + L1 LINE L1 2601 3369 -2777 1705 183 34 47 chr9 43749654 43750125 -98521319 + L1MA7 LINE L1 5827 6291 0 691 234 32 52 chr9 43751380 43751637 -98519807 - L1MD3 LINE L1 0 8042 7803 2358 80 0 0 chr9 43752010 43752309 -98519135 + AluSc SINE Alu 1 299 -10 248 265 35 65 chr9 43752420 43752590 -98518854 - L1M4 LINE L1 -3038 3108 2944 2455 50 0 20 chr9 43752632 43752931 -98518513 - AluY SINE Alu -18 293 1 1469 219 50 50 chr9 43753424 43753903 -98517541 - L1MB8 LINE L1 -6 6172 5694 250 146 55 0 chr9 43753906 43753961 -98517483 - L1M4 LINE L1 -2541 3841 3784 595 254 56 31 chr9 43753982 43754781 -98516663 - L1M4 LINE L1 -2751 3631 2616 900 116 177 22 chr9 43754783 43754964 -98516480 - THE1B LTR MaLR 0 364 156 4723 88 9 0 chr9 43754964 43755729 -98515715 - L1P3 LINE L1 -712 5460 4692 444 271 18 50 chr9 43756168 43756209 -98515235 - L1M4 LINE L1 -4683 1701 1660 2433 74 0 0 chr9 43756209 43756505 -98514939 - AluY SINE Alu -15 296 1 444 271 18 50 chr9 43756505 43756681 -98514763 - L1M4 LINE L1 -4724 1660 1491 1239 258 36 4 chr9 43756685 43757162 -98514282 - L1M4 LINE L1 -3493 2653 2162 1843 177 57 12 chr9 43757167 43757585 -98513859 - L1MC2 LINE L1 -1 6343 5907 4244 238 50 56 chr9 43757585 43759361 -98512083 - L1M4 LINE L1 -1413 4733 2969 348 180 34 0 chr9 43759472 43759561 -98511883 - L1M4 LINE L1 -3189 2957 2866 198 0 0 0 chr9 43759675 43759697 -98511747 + (A)n Simple_repeat Simple_repeat 1 22 0 2136 115 0 32 chr9 43760015 43760327 -98511117 - AluSq SINE Alu -11 302 1 2461 43 3 13 chr9 43760630 43760934 -98510510 - AluY SINE Alu -10 301 1 2018 146 48 19 chr9 43761299 43761743 -98509701 + LTR56 LTR ERV1 10 437 0 5465 218 49 45 chr9 43762242 43763588 -98507856 + MLT1A1-int LTR MaLR 379 1729 -6 718 214 108 54 chr9 43763593 43763727 -98507717 + MLT1A1 LTR MaLR 1 126 -270 1449 203 140 9 chr9 43763727 43764077 -98507367 - MSTD LTR MaLR 0 396 1 718 214 108 54 chr9 43764077 43764280 -98507164 + MLT1A1 LTR MaLR 126 396 0 879 293 285 41 chr9 43764280 43765112 -98506332 + L2 LINE L2 1459 2493 -821 768 293 32 18 chr9 43765214 43765497 -98505947 - MLT1H LTR MaLR -259 290 4 557 326 79 9 chr9 43765708 43765935 -98505509 + L2 LINE L2 2828 3070 -243 1625 132 17 7 chr9 43766428 43766723 -98504721 - L1MA9 LINE L1 -59 6253 5956 859 231 50 11 chr9 43766784 43767065 -98504379 - L1M4 LINE L1 -1546 4600 4309 345 250 62 10 chr9 43767070 43767166 -98504278 - L1M4 LINE L1 -3002 3144 3044 2215 196 25 6 chr9 43767168 43767658 -98503786 + L1 LINE L1 4660 5158 -988 344 239 37 69 chr9 43767661 43767879 -98503565 - L1M4 LINE L1 -955 5191 4981 362 267 14 48 chr9 43768031 43768108 -98503336 + L1M4 LINE L1 4865 4943 -1203 1749 201 23 58 chr9 43768108 43768312 -98503132 + MLT2D LTR ERVL 1 211 -203 2353 64 11 0 chr9 43768312 43768616 -98502828 + AluY SINE Alu 1 307 0 1749 201 23 58 chr9 43768616 43768787 -98502657 + MLT2D LTR ERVL 211 363 -51 237 108 0 0 chr9 43768787 43768824 -98502620 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1749 201 23 58 chr9 43768824 43768875 -98502569 + MLT2D LTR ERVL 363 414 0 362 267 14 48 chr9 43768875 43768943 -98502501 + L1M4 LINE L1 4943 5005 -1141 32 57 0 0 chr9 43769003 43769056 -98502388 + AT_rich Low_complexity Low_complexity 1 53 0 397 250 37 61 chr9 43769128 43769292 -98502152 - MIR SINE MIR -5 257 98 2432 70 0 3 chr9 43769372 43769674 -98501770 + AluY SINE Alu 1 301 -10 38 61 0 0 chr9 43769897 43769963 -98501481 + AT_rich Low_complexity Low_complexity 1 66 0 242 300 126 58 chr9 43770718 43770941 -98500503 + MIR SINE MIR 9 246 -16 1818 125 0 4 chr9 43771396 43771644 -98499800 + AluSx SINE Alu 44 290 -22 210 71 0 0 chr9 43771867 43771895 -98499549 + (CA)n Simple_repeat Simple_repeat 2 29 0 2755 10 0 0 chr9 43771952 43772253 -98499191 + AluYa5 SINE Alu 1 301 -10 364 162 0 0 chr9 43772958 43773026 -98498418 - MSTA LTR MaLR 0 428 361 599 206 23 0 chr9 43774474 43774605 -98496839 - MER5B DNA MER1_type -1 177 44 1872 158 16 10 chr9 43775078 43775381 -98496063 + AluSx SINE Alu 1 305 -7 2805 10 0 0 chr9 43775525 43775833 -98495611 - AluYa5 SINE Alu -3 308 1 632 287 275 33 chr9 43776249 43776693 -98494751 - MLT1F1 LTR MaLR 0 595 3 2260 24 0 0 chr9 43777313 43777565 -98493879 - AluYa8 SINE Alu -8 302 51 2468 69 0 3 chr9 43777957 43778262 -98493182 - AluY SINE Alu -7 304 1 352 272 64 16 chr9 43778266 43778391 -98493053 + MER58B DNA MER1_type 197 327 -14 3860 135 56 42 chr9 43778460 43779065 -98492379 + LTR39 LTR ERV1 1 620 -163 2394 46 0 0 chr9 43779065 43779368 -98492076 + AluY SINE Alu 1 303 0 3860 135 56 42 chr9 43779368 43779516 -98491928 + LTR39 LTR ERV1 620 765 -18 291 192 0 0 chr9 43779535 43779587 -98491857 + MER5A DNA MER1_type 23 74 -115 2161 117 3 16 chr9 43779589 43779905 -98491539 + AluSq SINE Alu 1 312 -1 775 80 18 0 chr9 43779917 43780030 -98491414 + LTR12 LTR ERV1 1 115 -599 238 328 16 0 chr9 43780052 43780177 -98491267 + LTR30 LTR ERV1 517 643 -79 1080 171 20 0 chr9 43780179 43780378 -98491066 + LTR12 LTR ERV1 379 581 -133 196 174 65 0 chr9 43780788 43780834 -98490610 + MIR SINE MIR 96 144 -118 2148 133 0 3 chr9 43781012 43781321 -98490123 - AluSg SINE Alu -2 308 1 1892 119 43 36 chr9 43783132 43783434 -98488010 - AluSx SINE Alu -8 304 1 25 90 0 0 chr9 43783674 43783741 -98487703 + AT_rich Low_complexity Low_complexity 1 67 0 308 264 119 25 chr9 43784404 43784639 -98486805 + LTR41 LTR ERVL 511 767 -6 2650 140 42 26 chr9 43784820 43785363 -98486081 + LTR49 LTR ERV1 1 492 -50 274 223 64 11 chr9 43785742 43785836 -98485608 - LTR41 LTR ERVL -672 101 3 2286 68 0 14 chr9 43786263 43786548 -98484896 + AluY SINE Alu 1 283 -28 984 22 30 8 chr9 43786548 43786682 -98484762 + (TATAA)n Simple_repeat Simple_repeat 4 140 0 21 0 0 0 chr9 43787032 43787053 -98484391 + AT_rich Low_complexity Low_complexity 1 21 0 2243 76 13 3 chr9 43787212 43787515 -98483929 - AluY SINE Alu -5 306 1 2274 79 3 23 chr9 43788352 43788656 -98482788 - AluSx SINE Alu -12 300 3 576 214 23 0 chr9 43789645 43789776 -98481668 - MER5B DNA MER1_type -1 177 44 1904 162 3 10 chr9 43790253 43790555 -98480889 + AluSx SINE Alu 1 300 -12 384 217 61 17 chr9 43791105 43791220 -98480224 - MLT1F1 LTR MaLR 0 595 476 * 659 280 44 21 chr9 43791208 43791548 -98479896 - MLT1F1 LTR MaLR -179 351 3 264 295 80 45 chr9 43794250 43794362 -98477082 - L2 LINE L2 -2 3270 3155 590 273 77 16 chr9 43795239 43795433 -98476011 + MIR SINE MIR 37 242 -20 374 314 44 6 chr9 43796510 43796669 -98474775 - MIR3 SINE MIR -11 197 33 250 291 127 0 chr9 43798465 43798544 -98472900 + L2 LINE L2 3182 3270 -43 1659 155 182 19 chr9 43798590 43798958 -98472486 - MSTA LTR MaLR 0 428 1 4041 152 20 0 chr9 43799474 43800160 -98471284 - L1PA16 LINE L1 -15 6151 5452 411 147 24 0 chr9 43800162 43800269 -98471175 - L1 LINE L1 -814 5332 5224 21 36 0 0 chr9 43801403 43801431 -98470013 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 43801580 43801604 -98469840 + AT_rich Low_complexity Low_complexity 1 24 0 2024 195 27 20 chr9 43801611 43802048 -98469396 - MER21B LTR ERV1 -3 860 421 1304 68 0 109 chr9 43802048 43802269 -98469175 - MER107 DNA MER1_type 0 197 1 1660 223 33 8 chr9 43802270 43802637 -98468807 - MER21B LTR ERV1 -445 418 43 422 208 0 0 chr9 43802635 43802712 -98468732 - MER21B LTR ERV1 -769 94 18 * 384 175 62 72 chr9 43802718 43802815 -98468629 - MER21B LTR ERV1 -767 96 1 539 283 26 43 chr9 43802829 43803059 -98468385 - L1ME1 LINE L1 -34 6132 5907 * 1088 198 39 47 chr9 43803058 43803480 -98467964 + L1M4c LINE L1 2295 2722 -3660 1085 213 161 2 chr9 43803471 43803874 -98467570 - L1M4 LINE L1 -1049 5097 4631 * 269 250 21 0 chr9 43803875 43803971 -98467473 - L1M4 LINE L1 -2144 4002 3905 886 169 17 0 chr9 43804127 43804305 -98467139 - L1MC3 LINE L1 -747 7038 6858 279 343 52 41 chr9 43805892 43806064 -98465380 + L2 LINE L2 2199 2372 -942 202 345 99 63 chr9 43806531 43806783 -98464661 + L2 LINE L2 2550 2810 -504 4459 42 2 7 chr9 43806817 43807370 -98464074 + L1PA4 LINE L1 5606 6155 0 8601 86 4 8 chr9 43807609 43808814 -98462630 + L1P3 LINE L1 1 1200 -5261 3382 182 42 4 chr9 43808819 43809518 -98461926 - L1P LINE L1 -1798 4348 3624 240 203 0 0 chr9 43809523 43809582 -98461862 - L1PA12 LINE L1 -5501 2080 2022 1114 314 38 75 chr9 43809590 43811053 -98460391 - L1PA12 LINE L1 -6117 1464 56 286 285 73 32 chr9 43811823 43811946 -98459498 - MIR SINE MIR -21 241 114 970 244 47 60 chr9 43811953 43812383 -98459061 + MLT2B1 LTR ERVL 1 424 -40 411 202 0 0 chr9 43812391 43812480 -98458964 + (CA)n Simple_repeat Simple_repeat 2 90 0 245 198 279 0 chr9 43812493 43812579 -98458865 - MIR SINE MIR -132 130 21 652 142 24 110 chr9 43812640 43812800 -98458644 + MER6 DNA MER2_type -64 108 -757 2362 53 0 47 chr9 43812800 43813119 -98458325 - AluY SINE Alu -7 304 1 652 142 24 110 chr9 43813119 43813170 -98458274 + MER6 DNA MER2_type 108 864 -1 434 314 28 8 chr9 43813175 43813343 -98458101 - MIR SINE MIR -42 166 1 223 316 13 13 chr9 43814069 43814145 -98457299 - MIR SINE MIR -147 115 40 572 181 125 0 chr9 43815606 43815750 -98455694 - MER3 DNA MER1_type -80 129 15 352 253 11 0 chr9 43816167 43816254 -98455190 + MLT1K LTR MaLR 331 418 -170 1459 174 25 0 chr9 43816341 43816583 -98454861 + AluJo SINE Alu 43 290 -22 2159 151 49 58 chr9 43816855 43816981 -98454463 + MSTB LTR MaLR 1 127 -299 2451 52 0 7 chr9 43816981 43817286 -98454158 + AluY SINE Alu 1 303 -8 2159 151 49 58 chr9 43817286 43817538 -98453906 + MSTB LTR MaLR 127 377 -49 2496 46 0 13 chr9 43817538 43817845 -98453599 + AluY SINE Alu 1 303 -8 2159 151 49 58 chr9 43817845 43817895 -98453549 + MSTB LTR MaLR 377 426 0 2528 62 0 0 chr9 43819251 43819560 -98451884 + AluY SINE Alu 1 309 -2 225 229 16 49 chr9 43820507 43820568 -98450876 - MIR SINE MIR 0 262 204 183 336 154 55 chr9 43820915 43821299 -98450145 + L2 LINE L2 150 571 -2743 22 0 0 0 chr9 43821385 43821407 -98450037 + AT_rich Low_complexity Low_complexity 1 22 0 251 345 93 7 chr9 43821864 43822003 -98449441 + L2 LINE L2 1179 1329 -1985 237 291 68 48 chr9 43822047 43822150 -98449294 - L2 LINE L2 0 3272 3168 214 331 69 47 chr9 43822132 43822625 -98448819 + L2 LINE L2 1466 1969 -1345 * 2052 120 0 3 chr9 43822649 43822933 -98448511 - AluSq SINE Alu -30 283 1 208 295 105 21 chr9 43823112 43823207 -98448237 + L2 LINE L2 3171 3273 -40 2264 52 42 7 chr9 43823265 43823551 -98447893 + AluY SINE Alu 3 298 -13 876 334 63 19 chr9 43823594 43824019 -98447425 - L2 LINE L2 -4 3309 2866 602 200 7 7 chr9 43824281 43824421 -98447023 - L1MB8 LINE L1 -8 6170 6031 1698 78 0 0 chr9 43824427 43824632 -98446812 + AluSg SINE Alu 1 205 -105 355 156 0 16 chr9 43824632 43824690 -98446754 + AluSg SINE Alu 245 301 0 800 168 24 0 chr9 43824726 43824893 -98446551 - L1MB8 LINE L1 -194 5984 5814 * 9007 214 71 35 chr9 43824892 43825722 -98445722 - L1MB2 LINE L1 -9 6398 5600 189 0 0 0 chr9 43825722 43825743 -98445701 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 9007 214 71 35 chr9 43825743 43826114 -98445330 - L1MB2 LINE L1 -807 5600 5244 1507 140 70 28 chr9 43826114 43826399 -98445045 - AluJo SINE Alu -15 297 1 9007 214 71 35 chr9 43826399 43827150 -98444294 - L1MB2 LINE L1 -1163 5244 4522 369 0 0 0 chr9 43827150 43827191 -98444253 + (TG)n Simple_repeat Simple_repeat 2 42 0 9007 214 71 35 chr9 43827191 43829622 -98441822 - L1MB2 LINE L1 -1885 4522 1800 2124 103 0 48 chr9 43829622 43829932 -98441512 - AluY SINE Alu -16 295 1 9007 214 71 35 chr9 43829932 43830456 -98440988 - L1MB2 LINE L1 -4607 1800 1297 1181 293 28 30 chr9 43830576 43831047 -98440397 + L1PA13 LINE L1 1 470 -6317 5118 215 7 21 chr9 43831289 43832641 -98438803 + L1 LINE L1 2841 4174 -1972 621 61 12 0 chr9 43832643 43832725 -98438719 + AluY SINE Alu 1 83 -227 305 285 51 68 chr9 43833185 43833420 -98438024 - MER67C LTR ERV1 -479 231 1 283 255 64 64 chr9 43833797 43833949 -98437495 - MIR3 SINE MIR -36 172 3 261 224 0 15 chr9 43834138 43834205 -98437239 - MER92C LTR ERV1 -2 552 487 939 215 10 0 chr9 43834261 43834456 -98436988 - MER92C LTR ERV1 -170 384 188 2513 80 0 3 chr9 43834569 43834881 -98436563 + AluY SINE Alu 1 311 0 1281 7 0 0 chr9 43835266 43835402 -98436042 - AluY SINE Alu -175 136 1 732 265 52 26 chr9 43835506 43835736 -98435708 + L2 LINE L2 2392 2627 -687 936 235 24 62 chr9 43835742 43836031 -98435413 + MER70B LTR ERVL 4 281 -297 201 254 143 32 chr9 43837958 43838084 -98433360 - L2 LINE L2 0 3313 3174 1971 141 0 32 chr9 43838121 43838433 -98433011 + AluSx SINE Alu 1 302 -10 907 256 124 25 chr9 43838664 43839066 -98432378 - LTR16A1 LTR ERVL 0 457 16 219 315 14 0 chr9 43839453 43839526 -98431918 + GA-rich Low_complexity Low_complexity 1 74 0 2242 103 6 6 chr9 43839606 43839917 -98431527 + AluSp SINE Alu 1 311 -2 1811 251 13 57 chr9 43840130 43840673 -98430771 - MLT2B1 LTR ERVL 0 520 2 21185 184 46 23 chr9 43840674 43844639 -98426805 - ERVL LTR ERVL -7 5757 1701 2431 138 70 2 chr9 43844639 43845037 -98426407 + MSTA LTR MaLR 1 425 -3 1856 238 61 7 chr9 43845038 43845462 -98425982 - ERVL LTR ERVL -4057 1707 1261 1140 162 91 50 chr9 43845462 43845703 -98425741 + MER47B DNA MER2_type 1 251 -167 1336 120 48 10 chr9 43845731 43845939 -98425505 - L1PB1 LINE L1 0 6151 5936 2356 158 13 10 chr9 43845939 43846337 -98425107 + Tigger5 DNA MER2_type 1924 2322 -1 2829 228 71 11 chr9 43846338 43847502 -98423942 - ERVL LTR ERVL -4502 1262 4 1211 245 71 58 chr9 43847525 43847921 -98423523 - MLT2B1 LTR ERVL 0 520 120 2327 63 0 66 chr9 43849162 43849481 -98421963 + AluY SINE Alu 1 298 -13 1653 16 0 0 chr9 43849506 43849690 -98421754 + AluYb8 SINE Alu 133 316 -2 3658 131 39 0 chr9 43850077 43850610 -98420834 - MER41C LTR ERV1 0 554 1 250 208 111 28 chr9 43851302 43851374 -98420070 - MER5A DNA MER1_type -77 112 35 21 0 0 0 chr9 43852064 43852085 -98419359 + AT_rich Low_complexity Low_complexity 1 21 0 1196 214 64 10 chr9 43852265 43852578 -98418866 + L1ME1 LINE L1 5822 6151 -15 2288 107 3 0 chr9 43852883 43853191 -98418253 - AluSg SINE Alu -1 309 1 251 118 0 0 chr9 43853241 43853275 -98418169 + Alu SINE Alu 1 34 -274 1084 53 8 8 chr9 43853380 43853511 -98417933 + AluY SINE Alu 1 131 -180 1239 190 0 65 chr9 43853532 43853591 -98417853 + L1 LINE L1 4164 4225 -1921 2143 125 0 3 chr9 43853591 43853888 -98417556 - AluSx SINE Alu -16 296 1 1239 190 0 65 chr9 43853888 43854016 -98417428 + L1 LINE L1 4225 4326 -1820 2930 164 58 24 chr9 43854016 43854554 -98416890 + LTR38 LTR ERV1 1 556 0 1239 190 0 65 chr9 43854554 43854675 -98416769 + L1 LINE L1 4326 4453 -1693 5820 128 14 17 chr9 43856118 43857810 -98413634 + L1PA16 LINE L1 4441 6150 -16 890 217 47 19 chr9 43858740 43858952 -98412492 + MLT1A2 LTR MaLR 157 374 0 2051 141 3 0 chr9 43860013 43860317 -98411127 - AluSq SINE Alu -8 305 1 23 33 0 0 chr9 43860400 43860430 -98411014 + AT_rich Low_complexity Low_complexity 1 30 0 358 234 21 0 chr9 43860598 43860692 -98410752 - MIR SINE MIR -92 170 75 2628 49 0 0 chr9 43861047 43861354 -98410090 - AluY SINE Alu -4 307 1 2039 125 0 7 chr9 43861671 43861985 -98409459 - AluSg SINE Alu 0 312 1 2091 144 64 25 chr9 43862210 43862748 -98408696 - MLT2A2 LTR ERVL 0 554 4 595 208 195 0 chr9 43863260 43863414 -98408030 - MIR SINE MIR -43 219 36 2909 9 0 9 chr9 43864214 43864535 -98406909 + AluYb8 SINE Alu 1 318 0 311 313 54 7 chr9 43864660 43864807 -98406637 - MIR SINE MIR -70 192 39 2624 53 0 0 chr9 43865653 43865956 -98405488 - AluY SINE Alu -8 303 1 358 206 0 0 chr9 43867601 43867669 -98403775 + MER105 DNA DNA 137 204 0 304 346 10 0 chr9 43868428 43868532 -98402912 + MIR SINE MIR 43 147 -61 590 304 82 0 chr9 43868548 43868742 -98402702 + L2 LINE L2 1246 1455 -1859 1130 202 113 64 chr9 43868751 43869029 -98402415 + MLT1A1 LTR MaLR 2 302 -63 2137 126 7 0 chr9 43869029 43869330 -98402114 - AluSq SINE Alu -10 303 1 1130 202 113 64 chr9 43869330 43869397 -98402047 + MLT1A1 LTR MaLR 302 364 -1 8261 205 38 46 chr9 43869399 43871147 -98400297 + MLT1A1-int LTR MaLR 2 1735 0 845 214 108 54 chr9 43871147 43871281 -98400163 + MLT1A1 LTR MaLR 1 126 -270 1601 206 140 9 chr9 43871281 43871631 -98399813 - MSTD LTR MaLR 0 396 1 845 214 108 54 chr9 43871631 43871834 -98399610 + MLT1A1 LTR MaLR 126 396 0 917 291 298 39 chr9 43871834 43872630 -98398814 + L2 LINE L2 1459 2460 -854 868 265 67 30 chr9 43872748 43873046 -98398398 - MLT1H LTR MaLR -237 312 4 542 338 31 18 chr9 43873260 43873485 -98397959 + L2 LINE L2 2843 3070 -243 2817 3 0 0 chr9 43873663 43873963 -98397481 + AluYa5 SINE Alu 1 300 -11 1824 122 17 7 chr9 43874287 43874582 -98396862 - L1MA9 LINE L1 -59 6253 5956 923 250 91 18 chr9 43874584 43874924 -98396520 - L1M4 LINE L1 -1473 4673 4309 278 253 63 0 chr9 43874929 43875024 -98396420 - L1M4 LINE L1 -3002 3144 3044 2501 196 24 4 chr9 43875026 43875522 -98395922 + L1 LINE L1 4660 5165 -981 406 244 37 69 chr9 43875519 43875736 -98395708 - L1M4 LINE L1 -956 5190 4981 * 396 267 14 48 chr9 43875894 43875971 -98395473 + L1M4 LINE L1 4865 4936 -1210 1603 183 15 154 chr9 43875971 43876175 -98395269 + MLT2D LTR ERVL 1 101 -313 2336 67 11 0 chr9 43876175 43876459 -98394985 + AluY SINE Alu 1 287 -24 1603 183 15 154 chr9 43876459 43876735 -98394709 + MLT2D LTR ERVL 101 414 0 396 267 14 48 chr9 43876735 43876803 -98394641 + L1M4 LINE L1 4936 5005 -1141 32 57 0 0 chr9 43876863 43876916 -98394528 + AT_rich Low_complexity Low_complexity 1 53 0 367 256 37 61 chr9 43876988 43877152 -98394292 - MIR SINE MIR -5 257 98 2480 69 0 3 chr9 43877232 43877538 -98393906 + AluY SINE Alu 1 305 -6 2813 13 0 3 chr9 43877563 43877872 -98393572 + AluYb8 SINE Alu 1 308 -10 394 162 0 0 chr9 43878181 43878249 -98393195 - THE1C LTR MaLR 0 428 361 1464 161 62 26 chr9 43879880 43880185 -98391259 - THE1C LTR MaLR -59 316 1 186 43 0 0 chr9 43880208 43880231 -98391213 + (TA)n Simple_repeat Simple_repeat 1 23 0 1934 73 15 27 chr9 43880231 43880491 -98390953 - AluSx SINE Alu -4 308 52 317 259 12 12 chr9 43881599 43881684 -98389760 + MER5A DNA MER1_type 3 87 -102 22 70 0 0 chr9 43882547 43882590 -98388854 + AT_rich Low_complexity Low_complexity 1 43 0 380 348 14 0 chr9 43883265 43883403 -98388041 + L2 LINE L2 2721 2860 -454 2254 132 0 54 chr9 43883569 43883939 -98387505 + L1PB4 LINE L1 5794 6143 -13 2733 159 29 23 chr9 43884127 43884611 -98386833 - LTR22B LTR ERVK -5 487 1 1338 183 26 57 chr9 43885249 43885594 -98385850 - MER89 LTR ERV1 0 559 165 704 221 27 0 chr9 43885658 43885807 -98385637 - MER89-int LTR ERV1 0 6801 6649 1651 148 45 39 chr9 43885808 43886219 -98385225 + LTR12 LTR ERV1 1 480 -234 513 274 13 13 chr9 43886408 43886561 -98384883 - MER52A LTR ERV1 0 1755 1603 1082 222 66 82 chr9 43886569 43887196 -98384248 - MER52A LTR ERV1 -285 1470 711 2177 192 55 59 chr9 43887196 43887706 -98383738 - MER89-int LTR ERV1 -242 6559 6052 2196 83 0 23 chr9 43887805 43888105 -98383339 + AluY SINE Alu 1 293 -18 4973 233 55 61 chr9 43888255 43889665 -98381779 - MER89-int LTR ERV1 -2904 3897 354 5135 289 90 68 chr9 43889896 43890105 -98381339 - MER89-int LTR ERV1 -4265 2536 2333 1755 155 3 67 chr9 43890105 43890421 -98381023 - AluSx SINE Alu -16 296 1 5135 289 90 68 chr9 43890421 43890652 -98380792 - MER89-int LTR ERV1 -4468 2333 2109 1910 152 9 25 chr9 43890652 43890968 -98380476 + AluSx SINE Alu 1 311 -1 5135 289 90 68 chr9 43890968 43893006 -98378438 - MER89-int LTR ERV1 -4692 2109 2 2180 127 0 13 chr9 43893019 43893334 -98378110 + AluSx SINE Alu 1 311 -1 1379 235 50 1 chr9 43893339 43893807 -98377637 - MER89 LTR ERV1 -4 555 3 23 33 0 0 chr9 43894858 43894888 -98376556 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr9 43895078 43895122 -98376322 + AT_rich Low_complexity Low_complexity 1 44 0 2418 82 3 0 chr9 43895226 43895532 -98375912 + AluY SINE Alu 1 307 -4 240 248 98 53 chr9 43896395 43896528 -98374916 + L1MEd LINE L1 2 140 -5979 6291 152 26 7 chr9 43896868 43897981 -98373463 - L1P LINE L1 -818 5328 4195 2404 88 0 0 chr9 43898092 43898388 -98373056 - AluY SINE Alu -15 296 1 298 148 0 19 chr9 43898396 43898450 -98372994 - L1ME LINE L1 -299 5822 5770 415 198 0 153 chr9 43898838 43898885 -98372559 - MER58B DNA MER1_type -2080 340 287 2910 170 85 2 chr9 43898885 43899392 -98372052 + MER44D DNA MER2_type 2 605 0 415 198 0 153 chr9 43899392 43899444 -98372000 - MER58B DNA MER1_type -2133 287 271 2720 157 39 35 chr9 43899444 43899929 -98371515 + LTR45B LTR ERV1 3 489 0 415 198 0 153 chr9 43899929 43899985 -98371459 - MER58B DNA MER1_type -2149 271 208 756 187 136 51 chr9 43900265 43900336 -98371108 - L1ME2 LINE L1 -278 5886 5822 2117 97 10 7 chr9 43900336 43900626 -98370818 + AluSx SINE Alu 1 291 -21 756 187 136 51 chr9 43900626 43900811 -98370633 - L1ME2 LINE L1 -342 5822 5608 2526 51 14 0 chr9 43900820 43901115 -98370329 - AluY SINE Alu -12 299 1 25 31 0 0 chr9 43901264 43901296 -98370148 + AT_rich Low_complexity Low_complexity 1 32 0 2189 108 11 0 chr9 43901422 43901708 -98369736 + AluSq SINE Alu 2 290 -23 573 133 0 22 chr9 43901967 43902057 -98369387 + AluS SINE Alu 2 89 -223 1880 110 4 0 chr9 43902079 43902334 -98369110 + AluSx SINE Alu 44 299 -13 499 192 115 10 chr9 43905569 43905673 -98365771 + MER54A LTR ERVL 516 630 -271 * 1308 182 17 4 chr9 43905668 43905899 -98365545 + MER54B LTR ERVL 560 793 0 876 220 18 35 chr9 43905905 43906132 -98365312 + L1M4 LINE L1 4099 4321 -1825 274 304 0 0 chr9 43907000 43907069 -98364375 + MIR SINE MIR 83 151 -111 4329 129 29 2 chr9 43907312 43907930 -98363514 - MER41B LTR ERV1 0 635 1 422 159 75 37 chr9 43908036 43908143 -98363301 - LTR27 LTR ERV1 -1 635 525 2606 208 125 81 chr9 43908145 43909092 -98362352 - LTR28 LTR ERV1 -32 988 1 188 33 0 33 chr9 43909150 43909180 -98362264 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 443 282 135 12 chr9 43909223 43909393 -98362051 - MIR SINE MIR 0 262 72 1901 210 59 0 chr9 43910030 43910421 -98361023 + L1MC4 LINE L1 7258 7671 -371 530 251 73 17 chr9 43910423 43910602 -98360842 + L1MC4 LINE L1 7714 7902 -140 31 26 0 0 chr9 43910762 43910800 -98360644 + AT_rich Low_complexity Low_complexity 1 38 0 2353 109 0 0 chr9 43910835 43911147 -98360297 - AluSx SINE Alu 0 312 1 1629 169 38 0 chr9 43911294 43911561 -98359883 - AluJo SINE Alu -17 295 19 1857 142 129 3 chr9 43911563 43911895 -98359549 + MER57A LTR ERV1 5 378 -25 2962 216 61 26 chr9 43911895 43912682 -98358762 + L1M4 LINE L1 4316 5074 -1072 397 158 0 13 chr9 43912682 43912758 -98358686 + L1MA7 LINE L1 6210 6284 -7 2962 216 61 26 chr9 43912758 43912781 -98358663 + L1M4 LINE L1 5074 5095 -1051 2065 131 0 0 chr9 43912781 43913071 -98358373 - AluSx SINE Alu -22 290 1 2962 216 61 26 chr9 43913071 43913146 -98358298 + L1M4 LINE L1 5095 5233 -913 787 200 65 0 chr9 43913246 43913474 -98357970 + L1M4 LINE L1 5197 5437 -741 1185 99 0 163 chr9 43913478 43913699 -98357745 + AluSq SINE Alu 1 185 -128 2374 82 0 0 chr9 43914465 43914757 -98356687 - AluSg SINE Alu -18 292 1 33 56 0 0 chr9 43914912 43914966 -98356478 + AT_rich Low_complexity Low_complexity 1 54 0 593 274 116 88 chr9 43915181 43915637 -98355807 + L2 LINE L2 2845 3313 0 372 217 0 0 chr9 43916337 43916429 -98355015 + GA-rich Low_complexity Low_complexity 4 95 0 1773 127 65 10 chr9 43916546 43916838 -98354606 - AluSx SINE Alu -4 308 1 2562 47 0 3 chr9 43916886 43917187 -98354257 - AluY SINE Alu -11 300 1 2306 59 6 56 chr9 43918189 43918510 -98352934 - AluY SINE Alu -6 305 1 407 272 64 16 chr9 43918514 43918639 -98352805 + MER58B DNA MER1_type 197 327 -14 4106 138 56 44 chr9 43918708 43919314 -98352130 + LTR39 LTR ERV1 1 620 -163 2412 46 0 0 chr9 43919314 43919617 -98351827 + AluY SINE Alu 1 303 0 4106 138 56 44 chr9 43919617 43919765 -98351679 + LTR39 LTR ERV1 620 765 -18 290 192 0 0 chr9 43919784 43919836 -98351608 + MER5A DNA MER1_type 23 74 -115 2151 120 3 16 chr9 43919838 43920154 -98351290 + AluSq SINE Alu 1 312 -1 830 66 10 0 chr9 43920166 43920301 -98351143 + LTR12 LTR ERV1 1 251 -463 261 304 32 16 chr9 43920301 43920426 -98351018 + LTR30 LTR ERV1 517 643 -79 1261 113 148 0 chr9 43920428 43920631 -98350813 + LTR12 LTR ERV1 482 714 0 196 174 65 0 chr9 43921040 43921086 -98350358 + MIR SINE MIR 96 144 -118 2111 138 0 3 chr9 43921262 43921574 -98349870 - AluSx SINE Alu 0 312 2 763 196 7 20 chr9 43922045 43922198 -98349246 + L1M3e LINE L1 1 151 -6879 302 262 66 0 chr9 43922197 43922319 -98349125 + L1M3e LINE L1 1355 1484 -5546 * 242 200 0 0 chr9 43922427 43922467 -98348977 - LTR40a LTR ERVL -474 45 6 1135 95 0 0 chr9 43922944 43923091 -98348353 - AluSq SINE Alu -15 298 152 2222 115 0 0 chr9 43923104 43923408 -98348036 - AluSx SINE Alu -4 308 5 2329 82 10 3 chr9 43923435 43923729 -98347715 - AluY SINE Alu -14 297 2 2486 82 0 0 chr9 43923755 43924061 -98347383 - AluY SINE Alu -5 306 1 227 62 250 0 chr9 43925871 43925919 -98345525 - AluSc SINE Alu -2 297 238 1565 74 69 0 chr9 43926025 43926227 -98345217 + AluSq SINE Alu 1 216 -97 192 311 27 40 chr9 43926302 43926376 -98345068 + MER5A DNA MER1_type 117 189 0 201 224 112 41 chr9 43927343 43927441 -98344003 + L2 LINE L2 1628 1732 -1582 2155 123 7 0 chr9 43927777 43928077 -98343367 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr9 43928356 43928377 -98343067 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr9 43928848 43928912 -98342532 + AT_rich Low_complexity Low_complexity 1 64 0 2268 115 0 0 chr9 43929089 43929394 -98342050 - AluSx SINE Alu -7 305 1 371 223 34 126 chr9 43929567 43929805 -98341639 + L2 LINE L2 3098 3313 0 2332 59 0 16 chr9 43930309 43930616 -98340828 + AluY SINE Alu 1 302 -9 2031 131 10 0 chr9 43932003 43932328 -98339116 - AluSx SINE Alu 0 312 1 1841 157 17 0 chr9 43932887 43933180 -98338264 + AluSx SINE Alu 1 298 -14 2329 62 0 10 chr9 43934247 43934564 -98336880 - AluY SINE Alu 0 311 1 22 0 0 0 chr9 43934634 43934656 -98336788 + AT_rich Low_complexity Low_complexity 1 22 0 1340 98 5 5 chr9 43934756 43934949 -98336495 + AluY SINE Alu 112 304 -7 1981 159 3 0 chr9 43935026 43935334 -98336110 - AluSx SINE Alu -3 309 1 535 213 94 8 chr9 43935546 43935673 -98335771 + MER39 LTR ERV1 1 138 -569 * 2230 153 26 48 chr9 43935645 43935789 -98335655 + MER39 LTR ERV1 260 406 -301 4443 132 18 40 chr9 43935789 43936495 -98334949 + LTR8 LTR ERV1 1 691 0 2230 153 26 48 chr9 43936495 43936806 -98334638 + MER39 LTR ERV1 406 705 -2 1966 126 23 23 chr9 43937420 43937722 -98333722 - AluSq SINE Alu -11 302 1 2493 33 3 13 chr9 43938023 43938324 -98333120 - AluY SINE Alu -13 298 1 2287 131 51 22 chr9 43938689 43939133 -98332311 + LTR56 LTR ERV1 10 437 0 189 0 0 0 chr9 43940809 43940830 -98330614 + (TG)n Simple_repeat Simple_repeat 1 21 0 281 236 0 0 chr9 43941988 43942043 -98329401 - MIR3 SINE MIR -46 162 108 246 62 0 0 chr9 43942314 43942346 -98329098 + (TG)n Simple_repeat Simple_repeat 2 33 0 1490 195 28 83 chr9 43943649 43943694 -98327750 + MLT1B LTR MaLR 1 47 -343 2147 134 0 6 chr9 43943694 43944008 -98327436 - AluSx SINE Alu 0 312 1 1490 195 28 83 chr9 43944008 43944390 -98327054 + MLT1B LTR MaLR 47 390 0 463 221 29 43 chr9 43944414 43944554 -98326890 + MIR SINE MIR 125 262 0 24 32 0 0 chr9 43944879 43944910 -98326534 + AT_rich Low_complexity Low_complexity 1 31 0 799 171 16 0 chr9 43945160 43945289 -98326155 - FLAM_C SINE Alu -2 131 1 341 345 85 20 chr9 43945444 43945644 -98325800 + MIR SINE MIR 13 225 -37 2237 98 0 16 chr9 43946385 43946701 -98324743 + AluSx SINE Alu 1 311 -1 1363 200 54 11 chr9 43946841 43947121 -98324323 - AluJb SINE Alu -20 292 1 315 49 0 0 chr9 43947515 43947556 -98323888 + (CA)n Simple_repeat Simple_repeat 2 42 0 1625 154 51 73 chr9 43947556 43947608 -98323836 - MER47A DNA MER2_type -1959 364 312 4439 79 5 16 chr9 43947608 43947783 -98323661 - MER41A LTR ERV1 0 554 379 2246 110 0 0 chr9 43947783 43948082 -98323362 - AluSg SINE Alu -11 299 1 4439 79 5 16 chr9 43948082 43948466 -98322978 - MER41A LTR ERV1 -175 379 1 1625 154 51 73 chr9 43948466 43948784 -98322660 - MER47A DNA MER2_type -2011 312 2 906 242 126 53 chr9 43948794 43949190 -98322254 - MLT2B1 LTR ERVL -76 444 20 30 69 0 0 chr9 43949217 43949275 -98322169 + AT_rich Low_complexity Low_complexity 1 58 0 31 44 0 0 chr9 43949830 43949875 -98321569 + AT_rich Low_complexity Low_complexity 1 45 0 2151 122 7 0 chr9 43950319 43950615 -98320829 + AluSq SINE Alu 1 298 -15 286 237 0 0 chr9 43951096 43951155 -98320289 - MER82 DNA MER2_type -2 651 593 2418 236 47 11 chr9 43951155 43951705 -98319739 - MER82 DNA MER2_type -25 628 59 732 204 23 136 chr9 43951705 43951850 -98319594 + LTR48 LTR ERV1 1 104 -683 2208 149 27 43 chr9 43951850 43952220 -98319224 - THE1B LTR MaLR 0 364 1 732 204 23 136 chr9 43952220 43952339 -98319105 + LTR48 LTR ERV1 104 235 -552 2360 107 0 7 chr9 43952395 43952705 -98318739 - AluSg SINE Alu -2 308 1 2405 69 0 10 chr9 43952707 43953010 -98318434 - AluY SINE Alu -11 300 1 2491 168 68 50 chr9 43953010 43953569 -98317875 + LTR48 LTR ERV1 219 787 0 357 197 0 0 chr9 43953570 43953631 -98317813 - MER82 DNA MER2_type -592 61 1 706 240 77 5 chr9 43953832 43954028 -98317416 + MER58C DNA MER1_type 5 214 -1 1958 187 62 17 chr9 43954060 43954478 -98316966 - MER67C LTR ERV1 0 710 274 3268 132 14 51 chr9 43954514 43954987 -98316457 - MER4B LTR ERV1 -39 571 123 2393 133 15 3 chr9 43954987 43955326 -98316118 - MER61A LTR ERV1 0 343 1 3268 132 14 51 chr9 43955326 43955445 -98315999 - MER4B LTR ERV1 -487 123 1 782 248 56 56 chr9 43955452 43955722 -98315722 - MER67C LTR ERV1 -440 270 1 261 267 60 64 chr9 43956099 43956251 -98315193 - MIR3 SINE MIR -36 172 3 266 239 0 15 chr9 43956440 43956507 -98314937 - MER92C LTR ERV1 -2 552 487 1075 205 10 0 chr9 43956563 43956758 -98314686 - MER92C LTR ERV1 -170 384 188 2508 83 0 3 chr9 43956871 43957183 -98314261 + AluY SINE Alu 1 311 0 206 200 60 40 chr9 43957608 43957658 -98313786 + L2 LINE L2 2746 2796 -518 189 319 14 14 chr9 43957859 43957931 -98313513 - L2 LINE L2 -8 3264 3193 1438 179 8 19 chr9 43958879 43959136 -98312308 - L1PA16 LINE L1 -9 6157 5904 4324 166 61 24 chr9 43959409 43960371 -98311073 + L1MB1 LINE L1 5160 6163 -5 264 77 0 0 chr9 43961204 43961243 -98310201 + (TC)n Simple_repeat Simple_repeat 2 40 0 257 0 30 0 chr9 43961243 43961276 -98310168 + (CA)n Simple_repeat Simple_repeat 1 34 0 1682 168 77 12 chr9 43962374 43962967 -98308477 + MER39 LTR ERV1 1 706 -1 2523 32 0 0 chr9 43963118 43963449 -98307995 + AluY SINE Alu 1 331 0 235 298 43 62 chr9 43963561 43963722 -98307722 - L1 LINE L1 -2445 3701 3544 2274 88 0 7 chr9 43963941 43964278 -98307166 - AluSq SINE Alu 0 313 1 24 53 0 0 chr9 43966504 43966542 -98304902 + AT_rich Low_complexity Low_complexity 1 38 0 3002 64 0 3 chr9 43966855 43967231 -98304213 - THE1C-int LTR MaLR -1205 375 1 1346 151 70 126 chr9 43967231 43967458 -98303986 - THE1C LTR MaLR 0 375 178 1600 92 9 5 chr9 43967458 43967675 -98303769 - L1PA8 LINE L1 -5 6167 5950 1346 151 70 126 chr9 43967675 43967844 -98303600 - THE1C LTR MaLR -197 178 1 449 209 75 67 chr9 43968007 43968141 -98303303 - MLT1E1 LTR MaLR 0 654 520 1621 203 90 123 chr9 43968220 43968327 -98303117 - MLT1E2 LTR MaLR 0 626 517 2414 102 0 0 chr9 43968327 43968640 -98302804 + AluSq SINE Alu 1 313 0 1621 203 90 123 chr9 43968640 43969177 -98302267 - MLT1E2 LTR MaLR -109 517 1 589 155 146 0 chr9 43970668 43970771 -98300673 - THE1B LTR MaLR -226 138 21 431 311 161 31 chr9 43971610 43971896 -98299548 - L2 LINE L2 -38 3234 2912 2527 62 0 3 chr9 43971948 43972257 -98299187 + AluY SINE Alu 1 308 -3 287 335 124 54 chr9 43972983 43973323 -98298121 - L2 LINE L2 -597 2717 2337 1749 99 39 46 chr9 43973323 43973605 -98297839 + AluSx SINE Alu 18 297 -15 287 335 124 54 chr9 43973605 43973709 -98297735 - L2 LINE L2 -977 2337 2242 2059 100 0 24 chr9 43974050 43974339 -98297105 - AluY SINE Alu -29 282 1 302 280 152 24 chr9 43974407 43974532 -98296912 + MIR SINE MIR 1 141 -121 301 308 25 66 chr9 43974724 43975010 -98296434 - L1MC4a LINE L1 -1899 5909 5636 26 0 0 0 chr9 43975210 43975236 -98296208 + AT_rich Low_complexity Low_complexity 1 26 0 2032 120 0 3 chr9 43975824 43976133 -98295311 + AluSx SINE Alu 1 308 0 1966 128 0 42 chr9 43976947 43977119 -98294325 - AluSx SINE Alu -17 295 140 2401 80 0 10 chr9 43977119 43977430 -98294014 - AluY SINE Alu -3 308 1 1966 128 0 42 chr9 43977430 43977563 -98293881 - AluSx SINE Alu -172 140 3 1059 241 121 69 chr9 43978465 43979058 -98292386 - MLT1E3 LTR MaLR 0 624 1 545 294 43 47 chr9 43980206 43980474 -98290970 + MLT1G LTR MaLR 144 425 -170 2264 76 22 0 chr9 43980678 43980979 -98290465 - AluY SINE Alu 0 308 2 253 388 39 8 chr9 43980987 43981116 -98290328 - MIR3 SINE MIR -33 175 43 614 291 133 5 chr9 43981660 43981863 -98289581 + MIR SINE MIR 4 232 -30 2470 58 0 16 chr9 43982052 43982360 -98289084 + AluY SINE Alu 1 303 -8 2363 67 0 17 chr9 43982645 43982942 -98288502 - AluY SINE Alu -19 292 1 313 188 14 0 chr9 43982965 43983034 -98288410 - Alu SINE Alu -5 295 226 2203 100 7 0 chr9 43983564 43983855 -98287589 + AluSq SINE Alu 1 293 -20 896 96 0 0 chr9 43984026 43984180 -98287264 - AluY SINE Alu 0 311 175 231 263 38 25 chr9 43984305 43984385 -98287059 - MER94 DNA DNA -53 81 1 659 203 38 0 chr9 43984724 43984882 -98286562 + MER96B DNA MER1_type? 241 404 -13 1872 117 0 0 chr9 43985095 43985344 -98286100 - AluSx SINE Alu -20 292 44 2311 190 27 5 chr9 43985371 43985592 -98285852 - MSTB LTR MaLR 0 426 189 1774 149 3 3 chr9 43985592 43985914 -98285530 - AluSx SINE Alu 0 322 1 2311 190 27 5 chr9 43985914 43986101 -98285343 - MSTB LTR MaLR -237 189 8 207 0 0 0 chr9 43986101 43986124 -98285320 + (TA)n Simple_repeat Simple_repeat 2 24 0 2564 49 3 3 chr9 43986124 43986431 -98285013 - AluY SINE Alu -4 307 1 2480 66 3 0 chr9 43986904 43987207 -98284237 - AluY SINE Alu -7 304 1 503 274 18 53 chr9 43987498 43987779 -98283665 + L1ME3 LINE L1 5678 5948 -214 2414 81 3 7 chr9 43987780 43988087 -98283357 + AluY SINE Alu 1 306 -5 22 35 0 0 chr9 43988577 43988606 -98282838 + AT_rich Low_complexity Low_complexity 1 29 0 335 310 84 0 chr9 43988874 43989016 -98282428 - MLT1I LTR MaLR -243 166 13 2427 68 0 3 chr9 43989456 43989763 -98281681 + AluY SINE Alu 1 306 -5 315 237 144 50 chr9 43991080 43991219 -98280225 - Charlie8 DNA MER1_type -2236 181 30 2464 167 24 19 chr9 43991402 43991828 -98279616 - MSTB1 LTR MaLR 0 432 5 1694 170 66 0 chr9 43992104 43992393 -98279051 - AluJb SINE Alu -4 308 1 943 196 75 8 chr9 43992408 43992673 -98278771 - LTR54B LTR ERV1 -4 494 212 339 175 0 0 chr9 43992690 43992747 -98278697 - MER57-int LTR ERV1 -232 7305 7249 936 262 124 17 chr9 43993837 43994227 -98277217 + MER110A LTR ERV1 1 439 -29 1812 202 54 42 chr9 43994227 43994726 -98276718 - MLT1D LTR MaLR 0 505 1 936 262 124 17 chr9 43994726 43994747 -98276697 + MER110A LTR ERV1 439 456 -12 2215 117 0 3 chr9 43994751 43995050 -98276394 + AluSq SINE Alu 1 298 -15 307 220 0 0 chr9 43995531 43995590 -98275854 - MER82 DNA MER2_type -2 651 593 2525 236 48 2 chr9 43995590 43996135 -98275309 - MER82 DNA MER2_type -25 628 59 707 208 19 138 chr9 43996135 43996280 -98275164 + LTR48 LTR ERV1 1 103 -684 2207 149 27 43 chr9 43996280 43996650 -98274794 - THE1B LTR MaLR 0 364 1 707 208 19 138 chr9 43996650 43996764 -98274680 + LTR48 LTR ERV1 103 229 -558 207 0 0 0 chr9 43996767 43996790 -98274654 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2402 97 0 7 chr9 43996829 43997139 -98274305 - AluSg SINE Alu -2 308 1 2412 69 0 10 chr9 43997141 43997447 -98273997 - AluY SINE Alu -8 303 1 2545 161 68 50 chr9 43997447 43998006 -98273438 + LTR48 LTR ERV1 219 787 0 357 197 0 0 chr9 43998007 43998068 -98273376 - MER82 DNA MER2_type -592 61 1 687 237 88 10 chr9 43998269 43998463 -98272981 + MER58C DNA MER1_type 6 214 -1 1911 194 62 17 chr9 43998506 43998924 -98272520 - MER67C LTR ERV1 0 710 274 3242 136 12 50 chr9 43998960 43999434 -98272010 - MER4B LTR ERV1 -39 571 123 2376 135 15 6 chr9 43999434 43999774 -98271670 - MER61A LTR ERV1 0 343 1 3242 136 12 50 chr9 43999774 43999893 -98271551 - MER4B LTR ERV1 -487 123 1 765 252 56 56 chr9 43999900 44000170 -98271274 - MER67C LTR ERV1 -440 270 1 277 255 64 64 chr9 44000547 44000699 -98270745 - MIR3 SINE MIR -36 172 3 297 197 13 40 chr9 44000888 44000964 -98270480 - MER92C LTR ERV1 -2 552 479 1018 215 10 0 chr9 44001011 44001206 -98270238 - MER92C LTR ERV1 -170 384 188 2545 72 0 3 chr9 44001319 44001625 -98269819 + AluY SINE Alu 1 305 -6 185 220 60 40 chr9 44002065 44002115 -98269329 + L2 LINE L2 2746 2796 -518 215 315 90 0 chr9 44002316 44002405 -98269039 - L2 LINE L2 -8 3305 3209 1470 164 8 20 chr9 44003341 44003591 -98267853 - L1PA16 LINE L1 -16 6150 5904 4310 166 61 15 chr9 44003864 44004824 -98266620 + L1MB1 LINE L1 5160 6163 -5 291 28 0 0 chr9 44005656 44005692 -98265752 + (TC)n Simple_repeat Simple_repeat 1 36 0 288 0 0 0 chr9 44005691 44005723 -98265721 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 1689 163 77 12 chr9 44006823 44007416 -98264028 + MER39 LTR ERV1 1 706 -1 410 321 90 58 chr9 44007629 44008040 -98263404 - L1M4 LINE L1 -2399 3747 3324 2189 109 6 3 chr9 44008050 44008388 -98263056 - AluSq SINE Alu 0 313 1 22 0 0 0 chr9 44010629 44010651 -98260793 + AT_rich Low_complexity Low_complexity 1 22 0 3026 64 0 0 chr9 44010966 44011341 -98260103 - THE1B-int LTR MaLR -1205 375 1 2005 101 49 111 chr9 44011341 44011558 -98259886 - THE1B LTR MaLR 0 364 135 192 40 0 0 chr9 44011558 44011583 -98259861 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1524 92 10 10 chr9 44011583 44011790 -98259654 - L1PA8 LINE L1 -16 6156 5950 2005 101 49 111 chr9 44011790 44011959 -98259485 - THE1B LTR MaLR -227 137 1 462 209 75 67 chr9 44012122 44012256 -98259188 - MLT1E1 LTR MaLR 0 654 520 1532 194 101 100 chr9 44012335 44012442 -98259002 - MLT1E2 LTR MaLR 0 626 521 2475 96 0 0 chr9 44012442 44012754 -98258690 + AluSq SINE Alu 1 312 -1 1532 194 101 100 chr9 44012754 44013302 -98258142 - MLT1E2 LTR MaLR -105 521 1 2282 60 10 3 chr9 44014222 44014520 -98256924 - AluY SINE Alu -11 300 1 22 0 0 0 chr9 44014668 44014690 -98256754 + AT_rich Low_complexity Low_complexity 1 22 0 2834 0 0 10 chr9 44014888 44015195 -98256249 + AluYa5 SINE Alu 1 304 -7 616 155 140 17 chr9 44015412 44015544 -98255900 - THE1B LTR MaLR -226 138 7 301 316 176 34 chr9 44016354 44016688 -98254756 - L2 LINE L2 -38 3234 2844 2633 48 0 3 chr9 44016688 44017000 -98254444 + AluY SINE Alu 1 311 0 301 316 176 34 chr9 44017000 44017022 -98254422 - L2 LINE L2 -428 2844 2827 266 345 108 62 chr9 44017726 44018072 -98253372 - L2 LINE L2 -597 2717 2388 1697 84 4 65 chr9 44018072 44018334 -98253110 + AluSx SINE Alu 18 263 -49 219 69 0 0 chr9 44018342 44018371 -98253073 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 266 345 108 62 chr9 44018371 44018470 -98252974 - L2 LINE L2 -932 2382 2242 1999 109 0 41 chr9 44018814 44019108 -98252336 - AluY SINE Alu -29 282 1 359 248 152 24 chr9 44019176 44019301 -98252143 + MIR SINE MIR 1 141 -121 316 304 25 66 chr9 44019492 44019778 -98251666 - L1MC4a LINE L1 -1899 5909 5636 26 0 0 0 chr9 44019979 44020005 -98251439 + AT_rich Low_complexity Low_complexity 1 26 0 2062 117 0 3 chr9 44020593 44020902 -98250542 + AluSx SINE Alu 1 308 0 2020 125 0 39 chr9 44021716 44021887 -98249557 - AluSx SINE Alu -17 295 140 2423 75 0 10 chr9 44021887 44022195 -98249249 - AluY SINE Alu -6 305 1 2020 125 0 39 chr9 44022195 44022328 -98249116 - AluSx SINE Alu -172 140 3 1201 216 179 76 chr9 44023225 44023818 -98247626 - MLT1E1 LTR MaLR 0 654 1 21 36 0 0 chr9 44024665 44024693 -98246751 + AT_rich Low_complexity Low_complexity 1 28 0 265 264 0 0 chr9 44024967 44025020 -98246424 + MLT1H1 LTR MaLR 142 194 -361 2295 62 22 0 chr9 44025274 44025575 -98245869 - AluY SINE Alu 0 308 2 252 395 31 8 chr9 44025583 44025712 -98245732 - MIR3 SINE MIR -33 175 44 591 296 133 5 chr9 44026256 44026459 -98244985 + MIR SINE MIR 4 232 -30 2365 65 0 36 chr9 44026927 44027234 -98244210 - AluY SINE Alu -15 296 1 2409 70 3 0 chr9 44027256 44027554 -98243890 - AluY SINE Alu -12 299 1 444 267 50 77 chr9 44028745 44029023 -98242421 - MER77 LTR ERV1 -7 598 291 1558 109 0 5 chr9 44029023 44029243 -98242201 + AluSq SINE Alu 83 301 -12 444 267 50 77 chr9 44029243 44029300 -98242144 - MER77 LTR ERV1 -314 291 234 334 294 114 20 chr9 44029533 44029734 -98241710 - L1MC4a LINE L1 -1895 5913 5694 2073 113 23 0 chr9 44029798 44030099 -98241345 + AluSg SINE Alu 1 308 -2 200 235 88 29 chr9 44030397 44030465 -98240979 + MIR SINE MIR 46 117 -145 2069 114 0 13 chr9 44031336 44031634 -98239810 - AluSx SINE Alu -18 294 1 4350 159 51 42 chr9 44032143 44032951 -98238493 - L1PB4 LINE L1 0 6156 5313 1621 147 25 53 chr9 44032951 44033271 -98238173 - AluSx SINE Alu -1 311 1 4350 159 51 42 chr9 44033271 44033632 -98237812 - L1PB4 LINE L1 -843 5313 4957 2038 166 86 10 chr9 44033633 44034039 -98237405 - LTR12 LTR ERV1 -234 1523 55 258 231 0 0 chr9 44034063 44034115 -98237329 - LTR30 LTR ERV1 -670 52 1 326 186 17 0 chr9 44034122 44034181 -98237263 - L1PB4 LINE L1 -1193 4953 4894 * 1810 176 34 21 chr9 44034177 44034557 -98236887 - L1PB4 LINE L1 -2218 3928 3544 479 327 76 19 chr9 44085030 44085241 -98186203 + MIR SINE MIR 15 237 -25 553 302 34 15 chr9 44085274 44085479 -98185965 + MLT1K LTR MaLR 373 581 -7 378 367 28 17 chr9 44085490 44085667 -98185777 - MER5A DNA MER1_type -10 179 1 848 183 11 5 chr9 44085827 44086013 -98185431 - L1MA6 LINE L1 -2 6298 6112 454 184 184 0 chr9 44087742 44087856 -98183588 - MER58C DNA MER1_type 0 215 81 2460 68 0 10 chr9 44087860 44088170 -98183274 + AluY SINE Alu 1 307 -4 23 78 0 0 chr9 44088326 44088377 -98183067 + AT_rich Low_complexity Low_complexity 1 51 0 2099 110 0 32 chr9 44089260 44089568 -98181876 - AluY SINE Alu -13 298 1 2041 141 10 0 chr9 44090164 44090469 -98180975 - AluSx SINE Alu -4 308 1 1469 163 47 60 chr9 44092960 44093260 -98178184 + AluJb SINE Alu 1 296 -16 2270 79 0 30 chr9 44093947 44094251 -98177193 - AluY SINE Alu -16 295 1 996 171 14 28 chr9 44095048 44095265 -98176179 + L1MA9 LINE L1 6074 6287 -25 931 191 95 19 chr9 44095434 44095644 -98175800 - MLT1B LTR MaLR -164 226 1 240 143 57 0 chr9 44095952 44096022 -98175422 + (TA)n Simple_repeat Simple_repeat 2 75 0 1289 117 0 44 chr9 44096031 44096236 -98175208 - AluSq SINE Alu -109 204 9 198 0 0 0 chr9 44096304 44096326 -98175118 + (T)n Simple_repeat Simple_repeat 1 22 0 1729 215 136 34 chr9 44096393 44096952 -98174492 - MLT1E2 LTR MaLR 0 626 11 6959 180 34 2 chr9 44097042 44098128 -98173316 + L1PA15 LINE L1 3933 4983 -1182 1508 160 82 25 chr9 44098128 44098247 -98173197 + AluJo SINE Alu 2 113 -199 375 23 0 0 chr9 44098247 44098291 -98173153 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1508 160 82 25 chr9 44098291 44098452 -98172992 + AluJo SINE Alu 113 298 -14 6959 180 34 2 chr9 44098452 44099580 -98171864 + L1PA15 LINE L1 4983 6164 -1 2356 83 0 6 chr9 44100137 44100450 -98170994 + AluY SINE Alu 1 311 0 756 259 123 50 chr9 44100528 44100868 -98170576 - MER93a LTR ERV1 -3 399 35 1389 179 87 33 chr9 44101552 44101887 -98169557 - MLT1A1 LTR MaLR -2 363 11 961 215 127 4 chr9 44103225 44103485 -98167959 + LTR37A LTR ERV1 78 369 -57 23 33 0 0 chr9 44103496 44103526 -98167918 + AT_rich Low_complexity Low_complexity 1 30 0 1949 141 3 3 chr9 44103549 44103857 -98167587 + AluSx SINE Alu 2 309 0 810 171 190 96 chr9 44104522 44104608 -98166836 + LTR37A LTR ERV1 18 95 -331 2471 71 0 7 chr9 44104608 44104918 -98166526 - AluY SINE Alu -3 308 1 810 171 190 96 chr9 44104918 44105205 -98166239 + LTR37A LTR ERV1 95 426 0 603 178 212 42 chr9 44105772 44105939 -98165505 + LTR37A LTR ERV1 111 248 -178 2270 185 144 22 chr9 44105939 44106069 -98165375 + MER67C LTR ERV1 1 114 -596 216 0 0 0 chr9 44106069 44106093 -98165351 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2270 185 144 22 chr9 44106093 44106595 -98164849 + MER67C LTR ERV1 114 710 0 603 178 212 42 chr9 44106595 44106686 -98164758 + LTR37A LTR ERV1 248 413 -13 226 291 55 36 chr9 44107370 44107480 -98163964 - MIR SINE MIR -119 143 32 281 273 13 0 chr9 44108510 44108587 -98162857 - L2 LINE L2 -9 3263 3186 599 164 37 8 chr9 44108637 44108771 -98162673 + LTR37B LTR ERV1 331 468 0 235 294 80 29 chr9 44109012 44109250 -98162194 - L1M4 LINE L1 -1174 4972 4723 591 231 100 6 chr9 44109484 44109644 -98161800 + MER5B DNA MER1_type 2 176 -2 2079 137 16 0 chr9 44111531 44111838 -98159606 + AluSx SINE Alu 1 312 0 2243 87 14 0 chr9 44111841 44112128 -98159316 + AluY SINE Alu 20 310 -1 2314 104 0 0 chr9 44112130 44112437 -98159007 + AluSq SINE Alu 1 307 -6 436 224 68 41 chr9 44112986 44113133 -98158311 - MER58A DNA MER1_type -29 195 45 328 333 0 0 chr9 44114584 44114686 -98156758 - MER94 DNA DNA -32 102 1 1893 155 111 17 chr9 44115578 44115900 -98155544 + MLT2D LTR ERVL 17 378 -36 369 75 0 0 chr9 44115900 44115953 -98155491 + (CA)n Simple_repeat Simple_repeat 2 54 0 1893 155 111 17 chr9 44115953 44115992 -98155452 + MLT2D LTR ERVL 378 412 -2 21 36 0 0 chr9 44116192 44116220 -98155224 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 44116304 44116327 -98155117 + AT_rich Low_complexity Low_complexity 1 23 0 1284 180 141 0 chr9 44117539 44117794 -98153650 + AluJb SINE Alu 1 291 -11 618 264 111 32 chr9 44118243 44118459 -98152985 + MIR SINE MIR 30 262 0 189 227 23 0 chr9 44118942 44118986 -98152458 - L2 LINE L2 -2 3270 3226 1767 168 3 10 chr9 44119261 44119559 -98151885 - AluJo SINE Alu -16 296 1 276 315 118 8 chr9 44119850 44119977 -98151467 + MER5A DNA MER1_type 43 183 -6 1882 141 21 7 chr9 44120055 44120346 -98151098 + AluSx SINE Alu 6 300 -12 2720 206 73 30 chr9 44120379 44121115 -98150329 - L1ME1 LINE L1 -3 6163 5396 238 176 88 29 chr9 44121148 44121216 -98150228 - L1M4 LINE L1 -1556 4590 4519 204 259 0 37 chr9 44121365 44121419 -98150025 + CT-rich Low_complexity Low_complexity 5 56 0 33 46 0 15 chr9 44121539 44121565 -98149879 + AT_rich Low_complexity Low_complexity 1 26 -38 1746 158 42 3 chr9 44121565 44121850 -98149594 - AluJb SINE Alu -16 296 1 33 46 0 15 chr9 44121850 44121888 -98149556 + AT_rich Low_complexity Low_complexity 26 64 0 703 297 44 53 chr9 44122774 44123497 -98147947 + L1MEc LINE L1 1022 1738 -4658 729 275 86 19 chr9 44123767 44124233 -98147211 + L1MEc LINE L1 2104 2558 -3657 362 169 28 0 chr9 44124731 44124802 -98146642 + MER116 DNA Mariner 5 77 -3 648 348 112 16 chr9 44126055 44126861 -98144583 - L2 LINE L2 0 3313 2427 218 368 28 9 chr9 44127018 44127124 -98144320 - L2 LINE L2 -606 2708 2601 1483 164 74 0 chr9 44127726 44127995 -98143449 + 7SLRNA srpRNA srpRNA 24 312 -8 183 100 0 0 chr9 44127996 44128026 -98143418 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 181 367 0 0 chr9 44129453 44129502 -98141942 - L2 LINE L2 -20 3293 3245 308 280 28 9 chr9 44130292 44130399 -98141045 - MIR3 SINE MIR 0 208 100 2401 73 0 3 chr9 44130886 44131186 -98140258 + AluY SINE Alu 7 305 -6 1995 160 0 3 chr9 44131399 44131706 -98139738 - AluSx SINE Alu -6 306 1 24 32 0 0 chr9 44132546 44132577 -98138867 + AT_rich Low_complexity Low_complexity 1 31 0 202 318 220 8 chr9 44133114 44133246 -98138198 + MIR SINE MIR 53 212 -50 198 297 14 54 chr9 44133894 44133968 -98137476 - MIR SINE MIR -17 245 175 252 260 48 68 chr9 44134123 44134269 -98137175 + MIR SINE MIR 42 184 -78 273 336 49 7 chr9 44135108 44135251 -98136193 + MIR SINE MIR 22 170 -92 269 322 89 0 chr9 44135727 44135817 -98135627 + MIR SINE MIR 30 127 -81 2140 114 0 32 chr9 44135847 44136155 -98135289 + AluSx SINE Alu 1 298 -14 29 0 0 0 chr9 44136405 44136434 -98135010 + AT_rich Low_complexity Low_complexity 1 29 0 3796 154 39 22 chr9 44138189 44138904 -98132540 + LTR8A LTR ERV1 1 727 0 372 271 21 42 chr9 44138914 44139058 -98132386 - HERVS71 LTR ERV1 -3911 5067 4927 2118 142 72 4 chr9 44139151 44139758 -98131686 + MER50 LTR ERV1 12 711 -23 206 255 0 0 chr9 44141011 44141062 -98130382 + A-rich Low_complexity Low_complexity 1 51 0 1973 91 34 20 chr9 44142653 44142949 -98128495 + AluY SINE Alu 1 300 -11 441 268 54 0 chr9 44144339 44144451 -98126993 - MER8 DNA MER2_type -121 118 1 22 0 0 0 chr9 44145147 44145169 -98126275 + AT_rich Low_complexity Low_complexity 1 22 0 2239 114 0 0 chr9 44145764 44146061 -98125383 - AluSg SINE Alu -12 298 2 2470 68 3 7 chr9 44146094 44146404 -98125040 + AluY SINE Alu 1 309 -2 490 88 11 11 chr9 44146964 44147055 -98124389 + (GA)n Simple_repeat Simple_repeat 2 92 0 184 267 100 0 chr9 44147949 44148009 -98123435 + MIR SINE MIR 178 243 -19 1414 207 99 14 chr9 44148905 44149258 -98122186 - MLT1B LTR MaLR -4 386 4 268 119 45 0 chr9 44150357 44150424 -98121020 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 281 346 33 25 chr9 44150683 44150979 -98120465 + L2 LINE L2 2791 3090 -223 213 214 0 0 chr9 44151079 44151121 -98120323 + L2 LINE L2 3241 3282 -31 196 239 104 0 chr9 44151433 44151500 -98119944 - MIR SINE MIR -83 179 106 204 338 14 14 chr9 44151557 44151631 -98119813 - MIR SINE MIR -105 103 30 454 204 259 27 chr9 44151655 44151840 -98119604 + MIR SINE MIR 40 262 0 1348 199 10 70 chr9 44151859 44152097 -98119347 - AluJo SINE Alu -15 297 79 1723 104 0 0 chr9 44152097 44152327 -98119117 + AluSg/x SINE Alu 72 301 -9 1348 199 10 70 chr9 44152327 44152389 -98119055 - AluJo SINE Alu -233 79 15 35755 62 10 6 chr9 44152663 44153436 -98118008 + L1PA5 LINE L1 405 1174 -4980 318 23 0 0 chr9 44153436 44153480 -98117964 + L1PA2 LINE L1 6110 6153 -2 35755 62 10 6 chr9 44153480 44158430 -98113014 + L1PA5 LINE L1 1174 6148 -6 1494 192 45 24 chr9 44158618 44158951 -98112493 - MER2 DNA MER2_type -4 340 1 2285 104 13 0 chr9 44159345 44159653 -98111791 - AluSq SINE Alu -1 312 1 2778 182 10 11 chr9 44160015 44160536 -98110908 + MER44D DNA MER2_type 1 575 -30 436 134 268 0 chr9 44161461 44161573 -98109871 - L1MB1 LINE L1 -19 6170 6029 1445 181 16 23 chr9 44161580 44161884 -98109560 + L1M3 LINE L1 5484 5785 -383 26 0 0 0 chr9 44163634 44163660 -98107784 + AT_rich Low_complexity Low_complexity 1 26 0 433 165 31 16 chr9 44163755 44163882 -98107562 + CT-rich Low_complexity Low_complexity 4 132 0 295 129 0 57 chr9 44164596 44164666 -98106778 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 349 284 29 10 chr9 44165776 44165878 -98105566 - MER5B DNA MER1_type 0 178 75 1788 173 13 7 chr9 44166012 44166313 -98105131 - AluJb SINE Alu -6 306 4 655 288 29 0 chr9 44166832 44167002 -98104442 - MIR SINE MIR -74 188 14 256 159 16 16 chr9 44167285 44167348 -98104096 + GA-rich Low_complexity Low_complexity 2 64 0 3976 119 34 0 chr9 44168819 44169433 -98102011 - MER41B LTR ERV1 0 635 1 292 224 26 0 chr9 44170545 44170621 -98100823 - MER116 DNA Mariner 0 80 3 327 49 0 0 chr9 44171469 44171510 -98099934 + (TA)n Simple_repeat Simple_repeat 2 42 0 240 257 59 10 chr9 44171549 44171650 -98099794 - L1M4 LINE L1 -290 5884 5779 708 296 57 6 chr9 44172003 44172234 -98099210 + MIR SINE MIR 5 244 -18 294 233 22 11 chr9 44172427 44172517 -98098927 - L1M4 LINE L1 -2312 5473 5383 2302 69 0 0 chr9 44172522 44172828 -98098616 - AluY SINE Alu 0 311 6 264 281 65 43 chr9 44173117 44173256 -98098188 - L1P LINE L1 -1101 5045 4904 2163 117 0 13 chr9 44173388 44173688 -98097756 - AluSx SINE Alu -16 296 1 13228 182 33 36 chr9 44173774 44175789 -98095655 - L1MA8 LINE L1 -2 7708 5689 1646 176 32 7 chr9 44175789 44176073 -98095371 - AluJb SINE Alu -21 291 1 13228 182 33 36 chr9 44176073 44177487 -98093957 - L1MA8 LINE L1 -2021 5689 4272 2150 116 20 0 chr9 44177487 44177788 -98093656 - AluSc SINE Alu -2 307 1 13228 182 33 36 chr9 44177788 44178223 -98093221 - L1MA8 LINE L1 -3438 4272 3837 2311 90 0 13 chr9 44178223 44178522 -98092922 - AluSg SINE Alu -15 295 1 13228 182 33 36 chr9 44178522 44179788 -98091656 - L1MA8 LINE L1 -3873 3837 2598 287 169 14 0 chr9 44179804 44179875 -98091569 + CT-rich Low_complexity Low_complexity 3 74 0 684 257 0 0 chr9 44179926 44180062 -98091382 - FRAM SINE Alu -40 136 1 703 232 83 9 chr9 44180063 44180399 -98091045 - L1M3c LINE L1 -4572 2465 2105 695 167 61 14 chr9 44180405 44180580 -98090864 - MSTD LTR MaLR -51 377 155 234 114 0 0 chr9 44180578 44180613 -98090831 - MSTD LTR MaLR -361 35 1 * 5490 143 19 6 chr9 44180634 44182105 -98089339 - L1PA16 LINE L1 -5 6161 4675 317 237 108 0 chr9 44182133 44182226 -98089218 - L1M3c LINE L1 -6922 108 6 2221 92 37 7 chr9 44182600 44182895 -98088549 - AluSq SINE Alu -9 304 1 24 0 0 0 chr9 44183424 44183448 -98087996 + AT_rich Low_complexity Low_complexity 1 24 0 273 308 192 0 chr9 44183629 44183785 -98087659 - MIR SINE MIR -1 261 76 181 343 60 0 chr9 44185133 44185200 -98086244 - MIR SINE MIR -121 141 71 827 120 20 7 chr9 44185489 44185639 -98085805 - L1MB3 LINE L1 -3 6180 6029 235 180 20 0 chr9 44185917 44185967 -98085477 + (TA)n Simple_repeat Simple_repeat 2 52 0 201 74 0 0 chr9 44185991 44186018 -98085426 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr9 44186018 44186045 -98085399 + AT_rich Low_complexity Low_complexity 1 27 0 201 324 127 0 chr9 44187461 44187607 -98083837 - L2 LINE L2 -264 3049 2885 536 291 53 93 chr9 44187793 44188168 -98083276 - L2 LINE L2 -658 2656 2297 623 268 113 26 chr9 44188973 44189283 -98082161 - MER46C DNA MER2_type 0 338 2 2145 100 25 0 chr9 44190029 44190350 -98081094 + L1MA2 LINE L1 5976 6304 0 198 274 48 0 chr9 44191008 44191070 -98080374 - L2 LINE L2 -2 3270 3206 1229 210 107 62 chr9 44191076 44191514 -98079930 - MLT1C LTR MaLR -4 463 6 870 102 0 8 chr9 44192012 44192183 -98079261 - AluSp/q SINE Alu 0 336 167 2126 130 0 34 chr9 44192323 44192646 -98078798 + AluSx SINE Alu 1 312 0 23 54 0 0 chr9 44192865 44192902 -98078542 + AT_rich Low_complexity Low_complexity 1 37 0 431 218 73 0 chr9 44193736 44193846 -98077598 + L1MA8 LINE L1 5914 6031 -260 203 136 23 23 chr9 44194746 44194790 -98076654 + (TA)n Simple_repeat Simple_repeat 1 44 0 200 336 33 33 chr9 44195376 44195498 -98075946 + L3 LINE CR1 597 718 -859 2065 119 0 0 chr9 44195802 44196117 -98075327 - AluSc SINE Alu 0 315 1 206 136 23 0 chr9 44198256 44198300 -98073144 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2053 275 39 7 chr9 44199079 44199969 -98071475 + L1MEc LINE L1 2172 3051 -3164 546 214 40 0 chr9 44201448 44201574 -98069870 - L1MD2 LINE L1 -19 6340 6210 234 265 179 26 chr9 44201612 44201729 -98069715 - L1ME1 LINE L1 -90 6076 5942 * 456 206 96 14 chr9 44201727 44201873 -98069571 - L1MDa LINE L1 -6363 177 20 926 179 17 125 chr9 44202177 44202291 -98069153 - L1ME1 LINE L1 -334 5832 5707 2106 141 36 28 chr9 44202291 44202652 -98068792 - THE1B LTR MaLR 0 364 1 926 179 17 125 chr9 44202652 44202731 -98068713 - L1ME1 LINE L1 -459 5707 5621 1902 139 10 23 chr9 44202731 44203033 -98068411 - AluSx SINE Alu -14 298 1 926 179 17 125 chr9 44203033 44203189 -98068255 - L1ME1 LINE L1 -545 5621 5520 1014 214 41 22 chr9 44203219 44203537 -98067907 - L1ME1 LINE L1 -1610 4536 4213 1131 284 11 11 chr9 44203555 44203914 -98067530 + LTR40c LTR ERVL 5 363 -102 271 228 87 11 chr9 44203917 44204009 -98067435 - L1ME LINE L1 -676 5490 5392 * 461 244 31 2 chr9 44204007 44204140 -98067304 + L1ME2 LINE L1 5488 5638 -546 966 262 60 40 chr9 44204149 44204618 -98066826 + L1ME2 LINE L1 5686 6163 -1 1191 150 0 6 chr9 44205218 44205398 -98066046 + AluSq SINE Alu 1 179 -134 251 286 43 0 chr9 44205419 44205489 -98065955 + GA-rich Low_complexity Low_complexity 6 78 0 180 0 0 0 chr9 44205490 44205510 -98065934 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 353 296 0 22 chr9 44206867 44207046 -98064398 + (TA)n Simple_repeat Simple_repeat 1 175 0 228 174 0 0 chr9 44207075 44207121 -98064323 - LTR66 LTR ERVL -171 439 394 204 40 0 0 chr9 44207158 44207183 -98064261 + (CA)n Simple_repeat Simple_repeat 2 26 0 300 253 58 0 chr9 44207271 44207358 -98064086 - L1MC4 LINE L1 -1337 6705 6614 698 120 0 0 chr9 44208306 44208414 -98063030 - L1MA2 LINE L1 0 6304 6197 207 0 0 0 chr9 44208502 44208525 -98062919 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2127 68 21 21 chr9 44209375 44209690 -98061754 + AluSg SINE Alu 2 316 0 1861 147 55 0 chr9 44209762 44210108 -98061336 - L1MB3 LINE L1 -1 6182 5818 317 229 24 0 chr9 44210120 44210203 -98061241 - L1MB3 LINE L1 -411 5772 5688 669 213 20 87 chr9 44210210 44210405 -98061039 - MIR SINE MIR -48 214 31 322 219 21 31 chr9 44210579 44210675 -98060769 + MER58C DNA MER1_type 24 118 -97 1716 204 0 7 chr9 44210684 44210992 -98060452 + AluJo SINE Alu 1 306 -6 317 214 0 12 chr9 44210999 44211083 -98060361 + GA-rich Low_complexity Low_complexity 3 85 0 374 240 39 0 chr9 44211087 44211191 -98060253 + MER58C DNA MER1_type 106 213 -2 2331 164 24 19 chr9 44211201 44211669 -98059775 - L1MA7 LINE L1 0 6291 5822 884 91 15 23 chr9 44213235 44213367 -98058077 - FLAM_C SINE Alu -2 131 1 2414 63 0 60 chr9 44214607 44214938 -98056506 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 44216148 44216169 -98055275 + AT_rich Low_complexity Low_complexity 1 21 0 1815 117 53 0 chr9 44218116 44218424 -98053020 + AluSc SINE Alu 1 322 0 21 0 0 0 chr9 44219742 44219763 -98051681 + AT_rich Low_complexity Low_complexity 1 21 0 2048 108 0 57 chr9 44219763 44220079 -98051365 + AluY SINE Alu 1 298 -13 543 193 0 93 chr9 44221209 44221370 -98050074 - L1ME1 LINE L1 -8 6158 6013 241 381 68 7 chr9 44223431 44223578 -98047866 + L2 LINE L2 3109 3264 -8 2152 126 0 0 chr9 44224023 44224325 -98047119 + AluY SINE Alu 4 305 -6 283 353 172 0 chr9 44225423 44225545 -98045899 - L2 LINE L2 -3 3269 3127 627 268 50 42 chr9 44226024 44226477 -98044967 + MLT1D LTR MaLR 7 505 0 192 77 0 0 chr9 44226855 44226881 -98044563 + (A)n Simple_repeat Simple_repeat 1 26 0 267 281 28 28 chr9 44227355 44227533 -98043911 + MLT1K LTR MaLR 88 265 -323 576 252 48 0 chr9 44227588 44227735 -98043709 - L2 LINE L2 0 3313 3160 312 312 208 9 chr9 44227790 44228011 -98043433 + MLT1K LTR MaLR 309 573 -15 187 350 21 57 chr9 44228285 44228479 -98042965 + L2 LINE L2 2738 2924 -390 1101 70 6 38 chr9 44229223 44229381 -98042063 - AluYb8 SINE Alu -165 153 1 1711 85 15 0 chr9 44230013 44230273 -98041171 + L1MA1 LINE L1 6039 6302 0 26 0 0 0 chr9 44230275 44230301 -98041143 + AT_rich Low_complexity Low_complexity 1 26 0 1773 139 0 0 chr9 44231144 44231396 -98040048 + AluSg SINE Alu 45 296 -14 611 85 0 0 chr9 44231584 44231666 -98039778 + L1PA4 LINE L1 7 88 -6058 31830 51 37 34 chr9 44231666 44237186 -98034258 + L1PA4 LINE L1 617 6152 -3 254 331 108 16 chr9 44237300 44237551 -98033893 + LTR16C LTR ERVL 169 442 -49 1305 175 59 20 chr9 44238023 44238326 -98033118 - LTR40b LTR ERVL 0 462 148 24 0 0 0 chr9 44238759 44238783 -98032661 + AT_rich Low_complexity Low_complexity 1 24 0 629 253 146 0 chr9 44241262 44241495 -98029949 - L1MC4 LINE L1 -180 7862 7596 610 103 0 0 chr9 44241875 44241962 -98029482 - AluSg/x SINE Alu -10 300 214 1143 111 6 12 chr9 44241962 44242124 -98029320 - AluSq SINE Alu -152 161 1 2409 70 0 23 chr9 44242774 44243076 -98028368 - AluSq SINE Alu -18 295 1 22 0 0 0 chr9 44244458 44244480 -98026964 + GC_rich Low_complexity Low_complexity 1 22 0 309 210 153 51 chr9 44244942 44245099 -98026345 - MER96B DNA MER1_type? -244 173 1 2104 85 24 3 chr9 44245788 44246081 -98025363 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr9 44246874 44246902 -98024542 + AT_rich Low_complexity Low_complexity 1 28 0 1970 141 0 16 chr9 44247261 44247566 -98023878 - AluSx SINE Alu -12 300 1 27 29 0 0 chr9 44248828 44248862 -98022582 + AT_rich Low_complexity Low_complexity 1 34 0 2320 110 0 3 chr9 44249164 44249474 -98021970 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 44250922 44250962 -98020482 + AT_rich Low_complexity Low_complexity 1 40 0 1301 99 10 20 chr9 44251379 44251553 -98019891 - AluY SINE Alu -7 304 131 383 0 21 0 chr9 44251553 44251600 -98019844 + (TG)n Simple_repeat Simple_repeat 2 49 0 1301 99 10 20 chr9 44251600 44251626 -98019818 - AluY SINE Alu -180 131 106 262 0 0 0 chr9 44251628 44251664 -98019780 - AluY SINE Alu -130 171 136 441 0 0 0 chr9 44251664 44251713 -98019731 + (TG)n Simple_repeat Simple_repeat 2 50 0 2324 69 10 0 chr9 44251714 44252005 -98019439 - AluY SINE Alu -17 294 1 2081 130 7 0 chr9 44252231 44252530 -98018914 + AluSx SINE Alu 1 301 -11 3654 117 71 23 chr9 44252541 44252768 -98018676 + L1PA15 LINE L1 5522 5737 -428 2274 88 0 0 chr9 44252768 44253073 -98018371 + AluY SINE Alu 1 305 -6 3654 117 71 23 chr9 44253073 44253453 -98017991 + L1PA15 LINE L1 5737 6158 -7 334 317 148 0 chr9 44253537 44253679 -98017765 + MIR SINE MIR 74 236 -26 2021 258 64 27 chr9 44253794 44254851 -98016593 + L1MEc LINE L1 1562 2617 -3598 2283 103 0 3 chr9 44254851 44255153 -98016291 - AluSq SINE Alu -12 301 1 2021 258 64 27 chr9 44255153 44255385 -98016059 + L1MEc LINE L1 2617 2839 -3376 1741 231 26 30 chr9 44256176 44256706 -98014738 + L1M4c LINE L1 794 1323 -5061 2942 141 103 6 chr9 44256706 44257211 -98014233 + MER41C LTR ERV1 1 554 0 1741 231 26 30 chr9 44257211 44257290 -98014154 + L1M4c LINE L1 1323 1401 -4983 266 266 0 0 chr9 44257311 44257375 -98014069 + L1M4c LINE L1 1595 1658 -4726 * 4913 208 67 48 chr9 44257371 44257610 -98013834 + L1MC2 LINE L1 17 250 -6176 2161 128 10 0 chr9 44257610 44257915 -98013529 + AluSq SINE Alu 1 308 -5 4913 208 67 48 chr9 44257915 44260208 -98011236 + L1MC2 LINE L1 250 2575 -3851 1148 194 35 10 chr9 44260403 44260691 -98010753 + LTR43 LTR ERV1 176 470 -132 5211 235 47 81 chr9 44260773 44263310 -98008134 + L1MC2 LINE L1 2564 5014 -1412 1757 189 53 7 chr9 44263309 44263727 -98007717 + L1MC2 LINE L1 6187 6623 -1 * 1228 260 36 4 chr9 44263732 44264209 -98007235 + L1M4c LINE L1 2398 2889 -3493 452 266 18 50 chr9 44264213 44264389 -98007055 + L1M4c LINE L1 1491 1660 -4724 2477 70 0 0 chr9 44264389 44264688 -98006756 + AluY SINE Alu 1 299 -12 452 266 18 50 chr9 44264688 44264729 -98006715 + L1M4c LINE L1 1660 1701 -4683 4775 84 9 0 chr9 44265153 44265919 -98005525 + L1P3 LINE L1 4692 5461 -693 2421 45 7 7 chr9 44265942 44266250 -98005194 - AluY SINE Alu -3 308 1 903 116 177 22 chr9 44266250 44266431 -98005013 + THE1B LTR MaLR 156 364 0 295 288 8 23 chr9 44266433 44266565 -98004879 + L1M4c LINE L1 2616 2745 -3637 2174 214 72 12 chr9 44366591 44367239 -97904205 - L1MD2 LINE L1 -226 6133 5447 603 329 108 67 chr9 44367447 44368124 -97903320 - L2 LINE L2 -340 2974 2270 205 222 56 0 chr9 44371445 44371499 -97899945 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 382 211 19 0 chr9 44371521 44371625 -97899819 + (TA)n Simple_repeat Simple_repeat 1 106 0 231 318 167 0 chr9 44372232 44372358 -97899086 + MLT1H LTR MaLR 399 545 -4 378 353 75 44 chr9 44372494 44372976 -97898468 + L3 LINE CR1 338 834 -743 12615 37 3 0 chr9 44373452 44375764 -97895680 + L1PA4 LINE L1 3841 6155 0 1737 69 0 0 chr9 44377745 44377978 -97893466 - L1PA3 LINE L1 -59 6096 5864 22 80 0 0 chr9 44378117 44378167 -97893277 + AT_rich Low_complexity Low_complexity 1 50 0 1504 182 35 14 chr9 44378562 44378848 -97892596 + AluJo SINE Alu 1 292 -20 1920 158 61 18 chr9 44379751 44380144 -97891300 + MSTA LTR MaLR 19 428 0 1911 225 106 35 chr9 44380146 44380767 -97890677 + MSTA-int LTR MaLR 3 667 -913 2104 111 4 0 chr9 44380789 44381100 -97890344 - AluY SINE Alu 0 314 3 3253 85 12 26 chr9 44381108 44381602 -97889842 - LTR15 LTR ERV1 -6 487 1 3973 185 80 17 chr9 44381604 44382476 -97888968 + MSTA-int LTR MaLR 725 1651 0 2087 178 41 14 chr9 44382476 44382893 -97888551 + MSTA LTR MaLR 1 428 0 21 57 0 0 chr9 44382909 44382944 -97888500 + AT_rich Low_complexity Low_complexity 1 35 0 2041 191 26 28 chr9 44383137 44383599 -97887845 - MER65C LTR ERV1 0 461 1 290 184 80 112 chr9 44383604 44383729 -97887715 - MER65C-int LTR ERV1 -5 4866 4746 334 248 70 8 chr9 44383776 44383905 -97887539 - LTR57-int LTR ERVL -4183 1160 1024 * 487 269 23 6 chr9 44383807 44383982 -97887462 - MER65-int LTR ERV1 -2819 2052 1875 4444 248 159 26 chr9 44383985 44385911 -97885533 + L1PA15-16 LINE L1 3 2226 -4623 2076 144 0 0 chr9 44385911 44386210 -97885234 - AluSx SINE Alu -13 299 1 4444 248 159 26 chr9 44386210 44386353 -97885091 + L1PA15-16 LINE L1 2226 2349 -4500 569 252 31 2 chr9 44386357 44386667 -97884777 - LTR34 LTR ERV1 -189 510 156 336 218 73 18 chr9 44386810 44386920 -97884524 - MER4C LTR ERV1 -346 119 4 1301 163 66 31 chr9 44387120 44387377 -97884067 + AluJo SINE Alu 1 266 -46 344 330 128 35 chr9 44387419 44387516 -97883928 + L1MC4a LINE L1 5542 5629 -2179 1884 132 0 4 chr9 44387516 44387803 -97883641 - AluSx SINE Alu 0 306 21 344 330 128 35 chr9 44387803 44388015 -97883429 + L1MC4a LINE L1 5629 5882 -1926 31 0 0 0 chr9 44388288 44388319 -97883125 + AT_rich Low_complexity Low_complexity 1 31 0 247 296 37 12 chr9 44388357 44388438 -97883006 + MIR SINE MIR 61 143 -65 22 0 0 0 chr9 44389889 44389911 -97881533 + AT_rich Low_complexity Low_complexity 1 22 0 917 81 0 0 chr9 44389911 44390034 -97881410 - L1MA3 LINE L1 0 6305 6183 1194 112 5 21 chr9 44390035 44390222 -97881222 - THE1C LTR MaLR -191 184 1 185 299 15 15 chr9 44393808 44393875 -97877569 - L2 LINE L2 -75 3238 3172 330 107 0 0 chr9 44394210 44394266 -97877178 + (TG)n Simple_repeat Simple_repeat 1 56 0 209 167 19 0 chr9 44394270 44394324 -97877120 + GA-rich Low_complexity Low_complexity 2 56 0 867 295 138 26 chr9 44394352 44394932 -97876512 - L2 LINE L2 -831 2483 1839 611 64 0 0 chr9 44395134 44395212 -97876232 + L1PA8 LINE L1 6077 6154 -18 351 0 0 0 chr9 44395212 44395251 -97876193 + (GA)n Simple_repeat Simple_repeat 2 40 0 1812 178 13 0 chr9 44395257 44395560 -97875884 + AluSx SINE Alu 1 307 -5 386 305 68 23 chr9 44395560 44395805 -97875639 + L1ME LINE L1 5453 5725 -437 312 197 28 44 chr9 44395859 44395966 -97875478 + L1MC4 LINE L1 1995 6984 -1338 696 159 44 0 chr9 44395972 44396229 -97875215 + (TA)n Simple_repeat Simple_repeat 1 268 0 227 236 0 0 chr9 44396183 44396238 -97875206 - L1MC4 LINE L1 -1340 6702 6648 * 2160 100 4 0 chr9 44396260 44396541 -97874903 - AluSq SINE Alu -31 282 1 219 319 14 0 chr9 44396595 44396664 -97874780 + L2 LINE L2 3242 3311 -2 1239 149 56 5 chr9 44397187 44397401 -97874043 - MER61E LTR ERV1 -4 565 341 260 253 10 91 chr9 44397453 44397552 -97873892 - MER61E LTR ERV1 -380 189 99 * 378 257 35 9 chr9 44397549 44397662 -97873782 - LTR25 LTR ERV1 -431 363 248 1947 125 11 0 chr9 44398241 44398513 -97872931 - AluSx SINE Alu -2 310 36 818 242 79 47 chr9 44398679 44398997 -97872447 + MER89-int LTR ERV1 1030 1357 -5444 1588 223 27 3 chr9 44398997 44399329 -97872115 + MLT1A1 LTR MaLR 1 340 -25 830 253 54 40 chr9 44399358 44399654 -97871790 + MER89-int LTR ERV1 1361 1660 -5141 1983 130 0 38 chr9 44400954 44401133 -97870311 - AluSg SINE Alu -7 303 140 1746 69 4 26 chr9 44401133 44401392 -97870052 - AluY SINE Alu 0 311 63 1983 130 0 38 chr9 44401392 44401527 -97869917 - AluSg SINE Alu -170 140 1 1498 192 173 16 chr9 44406733 44407103 -97864341 + MSTA LTR MaLR 1 428 0 1530 106 63 18 chr9 44410957 44415338 -97856106 - GSATII Satellite centromeric 0 4579 1 2680 150 10 14 chr9 44415341 44415833 -97855611 - TAR1 Satellite telomeric -105 2006 1517 1207 171 50 14 chr9 44415833 44416868 -97854576 - GSATII Satellite centromeric 0 1072 1 8105 65 4 21 chr9 44416882 44418139 -97853305 + SST1 Satellite centromeric 1 1235 0 267 175 0 0 chr9 44418156 44418213 -97853231 + (TG)n Simple_repeat Simple_repeat 1 57 0 350 139 14 0 chr9 44418236 44418308 -97853136 + CT-rich Low_complexity Low_complexity 2 74 0 351 290 169 33 chr9 44419227 44419624 -97851820 + L1 LINE L1 2869 3319 -2827 593 238 73 0 chr9 44419645 44419796 -97851648 - MER58B DNA MER1_type -16 325 164 396 327 40 36 chr9 44419886 44420381 -97851063 + L1 LINE L1 3369 3865 -2281 421 247 38 25 chr9 44421023 44421181 -97850263 - L1M4 LINE L1 -1232 4914 4755 234 62 0 0 chr9 44421813 44421845 -97849599 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 4259 96 24 13 chr9 44421845 44422463 -97848981 - L1PA8 LINE L1 -28 6144 5520 1792 156 55 0 chr9 44423297 44423475 -97847969 - AluSx SINE Alu -7 305 103 212 0 36 0 chr9 44423475 44423503 -97847941 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1792 156 55 0 chr9 44423503 44423613 -97847831 - AluSx SINE Alu -209 103 1 327 266 11 0 chr9 44423620 44423714 -97847730 - MIR SINE MIR -65 197 103 395 263 11 0 chr9 44424192 44424287 -97847157 - Zaphod DNA AcHobo -1 4030 3935 346 20 39 0 chr9 44424783 44424834 -97846610 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1385 225 21 106 chr9 44425048 44425079 -97846365 + MLT1D LTR MaLR 1 33 -472 2091 156 37 6 chr9 44425079 44425432 -97846012 + THE1B LTR MaLR 1 364 0 1385 225 21 106 chr9 44425432 44425685 -97845759 + MLT1D LTR MaLR 33 224 -281 1124 155 10 5 chr9 44425685 44425892 -97845552 - L1MA6 LINE L1 -6 6294 6087 1385 225 21 106 chr9 44425892 44426127 -97845317 + MLT1D LTR MaLR 224 477 -28 245 349 14 37 chr9 44426734 44426952 -97844492 - L2 LINE L2 -2248 1066 854 182 301 49 41 chr9 44427014 44427137 -97844307 - L2 LINE L2 -2570 744 621 686 247 29 23 chr9 44429295 44429469 -97841975 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr9 44429670 44429715 -97841729 + AT_rich Low_complexity Low_complexity 1 45 0 33 66 0 0 chr9 44429774 44429835 -97841609 + AT_rich Low_complexity Low_complexity 1 61 0 180 0 0 0 chr9 44430737 44430757 -97840687 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 992 338 33 7 chr9 44430787 44431210 -97840234 + LTR16B LTR ERVL 22 455 -9 286 284 17 9 chr9 44431956 44432072 -97839372 + L1ME3A LINE L1 4905 5021 -1125 444 298 117 32 chr9 44432253 44432689 -97838755 + L1ME3A LINE L1 5476 5948 -222 31 26 0 0 chr9 44434661 44434699 -97836745 + AT_rich Low_complexity Low_complexity 1 38 0 2391 59 7 10 chr9 44435954 44436258 -97835186 - AluY SINE Alu -7 304 2 438 115 0 53 chr9 44436476 44436589 -97834855 + (TTCCC)n Simple_repeat Simple_repeat 2 108 0 586 208 0 0 chr9 44436776 44436882 -97834562 - AluJb SINE Alu -12 300 195 886 241 103 103 chr9 44436988 44437306 -97834138 - MLT1D LTR MaLR 0 505 185 2106 128 3 10 chr9 44437306 44437612 -97833832 + AluSx SINE Alu 1 304 -8 886 241 103 103 chr9 44437612 44437796 -97833648 - MLT1D LTR MaLR -319 186 3 63 51 0 0 chr9 44438385 44438483 -97832961 + AT_rich Low_complexity Low_complexity 1 98 0 265 182 20 40 chr9 44438611 44438710 -97832734 + (TTATA)n Simple_repeat Simple_repeat 2 98 0 258 315 22 62 chr9 44438710 44438888 -97832556 - MIR SINE MIR -90 172 2 3322 260 56 31 chr9 44438893 44439351 -97832093 - L1ME1 LINE L1 -239 5996 5551 2287 114 3 0 chr9 44439351 44439657 -97831787 - AluSq SINE Alu -6 307 1 1625 164 3 61 chr9 44439659 44439969 -97831475 - AluJo SINE Alu -16 296 5 3322 260 56 31 chr9 44439969 44441390 -97830054 - L1ME1 LINE L1 -684 5551 4064 981 207 54 86 chr9 44441399 44441521 -97829923 - L1ME1 LINE L1 -4044 2352 2228 2317 102 0 3 chr9 44441521 44441826 -97829618 - AluSg SINE Alu 0 310 7 981 207 54 86 chr9 44441826 44441879 -97829565 - L1ME1 LINE L1 -4168 2228 2175 2694 170 27 47 chr9 44441879 44442431 -97829013 + MER34 LTR ERV1 1 541 -1 981 207 54 86 chr9 44442431 44442757 -97828687 - L1ME1 LINE L1 -4221 2175 1866 2187 117 3 0 chr9 44442778 44443076 -97828368 - AluSc SINE Alu 0 309 11 713 236 69 6 chr9 44443103 44443277 -97828167 - MER58A DNA MER1_type -38 186 2 1068 305 53 2 chr9 44443279 44443709 -97827735 - L1ME1 LINE L1 -4525 1871 1420 2466 181 18 20 chr9 44443727 44444219 -97827225 + L1P LINE L1 4076 4566 -1580 22 0 0 0 chr9 44444293 44444315 -97827129 + AT_rich Low_complexity Low_complexity 1 22 0 2213 121 48 22 chr9 44445527 44445882 -97825562 + THE1B LTR MaLR 1 364 0 9421 113 11 0 chr9 44445882 44447178 -97824266 + THE1B-int LTR MaLR 1 1310 -270 1397 269 78 63 chr9 44447178 44447629 -97823815 + L1ME2 LINE L1 4157 4600 -1564 2093 122 0 26 chr9 44447629 44447940 -97823504 + AluY SINE Alu 1 303 -8 1397 269 78 63 chr9 44447940 44448859 -97822585 + L1ME2 LINE L1 4600 5565 -599 2048 98 0 60 chr9 44448859 44449174 -97822270 + AluY SINE Alu 1 296 -15 1397 269 78 63 chr9 44449174 44449590 -97821854 + L1ME2 LINE L1 5565 5973 -191 828 174 0 0 chr9 44449595 44449733 -97821711 + AluSg/x SINE Alu 161 298 -14 2198 113 0 0 chr9 44450001 44450301 -97821143 + AluY SINE Alu 1 300 -11 203 394 94 25 chr9 44451149 44451309 -97820135 - L2 LINE L2 0 3272 3102 185 108 27 0 chr9 44451528 44451565 -97819879 + CT-rich Low_complexity Low_complexity 2 39 0 212 86 29 0 chr9 44451568 44451603 -97819841 + (TA)n Simple_repeat Simple_repeat 1 36 0 30 45 0 0 chr9 44451619 44451663 -97819781 + AT_rich Low_complexity Low_complexity 1 44 0 1763 142 40 20 chr9 44452058 44452361 -97819083 + AluSg1 SINE Alu 1 309 0 2126 128 0 3 chr9 44453552 44453865 -97817579 - AluSq SINE Alu -1 312 1 2273 133 20 145 chr9 44454450 44454960 -97816484 + MER4E LTR ERV1 305 750 -29 1429 165 134 0 chr9 44455446 44455707 -97815737 + AluJb SINE Alu 2 297 -5 2031 174 29 84 chr9 44457383 44457794 -97813650 - L1PB4 LINE L1 -3 6153 5776 5265 88 0 4 chr9 44457794 44458507 -97812937 - L1PA7 LINE L1 -7 6147 5438 2031 174 29 84 chr9 44458507 44458617 -97812827 - L1PB4 LINE L1 -380 5776 5661 683 344 122 20 chr9 44458980 44459537 -97811907 - L2 LINE L2 -25 3288 2670 306 0 0 0 chr9 44460241 44460275 -97811169 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr9 44462197 44462221 -97809223 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr9 44462376 44462405 -97809039 + AT_rich Low_complexity Low_complexity 1 29 0 1229 182 39 9 chr9 44462596 44462827 -97808617 + AluJo SINE Alu 21 258 -54 258 136 0 0 chr9 44462830 44462874 -97808570 + (A)n Simple_repeat Simple_repeat 1 44 0 594 260 0 0 chr9 44463045 44463168 -97808276 + FLAM_A SINE Alu 2 124 -9 2976 189 32 8 chr9 44463324 44463913 -97807531 - MER6A DNA MER2_type -1 604 2 201 218 0 58 chr9 44464450 44464537 -97806907 + A-rich Low_complexity Low_complexity 4 85 0 22 0 0 0 chr9 44466135 44466157 -97805287 + AT_rich Low_complexity Low_complexity 1 22 0 3035 175 73 17 chr9 44466200 44466339 -97805105 - L1MA6 LINE L1 -365 5935 5805 565 14 27 0 chr9 44466339 44466413 -97805031 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 3035 175 73 17 chr9 44466413 44466994 -97804450 - L1MA6 LINE L1 -495 5805 5183 22 0 0 0 chr9 44467597 44467619 -97803825 + AT_rich Low_complexity Low_complexity 1 22 0 326 314 0 0 chr9 44467623 44467725 -97803719 + MER103 DNA DNA 26 127 -39 235 304 108 23 chr9 44468097 44468311 -97803133 - L1MEd LINE L1 -4862 1257 1026 379 296 32 0 chr9 44468614 44468739 -97802705 - MIR SINE MIR -67 195 67 422 236 82 127 chr9 44469345 44469722 -97801722 - MER57B LTR ERV1 -2 401 42 303 311 57 6 chr9 44470163 44470340 -97801104 - L1MEd LINE L1 -4969 1150 965 261 208 0 0 chr9 44470342 44470390 -97801054 + MER58B DNA MER1_type 279 326 -15 266 254 9 53 chr9 44470467 44470581 -97800863 - L1MEd LINE L1 -5554 565 457 2606 32 0 10 chr9 44470736 44471046 -97800398 + AluY SINE Alu 1 307 -4 306 350 62 0 chr9 44471112 44471272 -97800172 - L1MEd LINE L1 -5943 176 7 315 335 18 6 chr9 44472522 44472692 -97798752 + MER5B DNA MER1_type 4 175 -3 4377 137 8 3 chr9 44472697 44473406 -97798038 + L1PA13 LINE L1 5451 6163 0 1129 222 118 12 chr9 44474720 44475058 -97796386 - MLT1A2 LTR MaLR 0 374 1 388 64 51 13 chr9 44475059 44475137 -97796307 + (TA)n Simple_repeat Simple_repeat 2 82 0 320 209 93 0 chr9 44475138 44475224 -97796220 - L1MC4 LINE L1 -1337 6705 6612 1795 190 18 0 chr9 44475274 44475600 -97795844 + Tigger1 DNA MER2_type 2 333 -2085 1399 161 13 67 chr9 44475658 44475956 -97795488 + AluJo SINE Alu 1 282 -30 1602 263 53 71 chr9 44476454 44477062 -97794382 - MER77 LTR ERV1 0 605 9 986 306 63 11 chr9 44477216 44477677 -97793767 - L1ME3A LINE L1 -171 5999 5515 524 278 75 63 chr9 44477862 44478193 -97793251 - LTR68 LTR ERV1 -292 448 114 733 366 149 0 chr9 44478208 44478659 -97792785 - MER69 DNA AcHobo -2008 518 1 333 303 57 100 chr9 44478660 44479066 -97792378 - L1ME LINE L1 -265 5856 5460 25 0 0 0 chr9 44479607 44479632 -97791812 + AT_rich Low_complexity Low_complexity 1 25 0 315 85 0 0 chr9 44481138 44481185 -97790259 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2028 117 3 0 chr9 44481185 44481467 -97789977 - AluSg SINE Alu -27 283 1 233 233 50 0 chr9 44481825 44481885 -97789559 - MLT1J1 LTR MaLR -315 131 69 262 255 67 40 chr9 44482068 44482217 -97789227 + L1ME LINE L1 5522 5674 -492 35 0 0 0 chr9 44483115 44483150 -97788294 + AT_rich Low_complexity Low_complexity 1 35 0 1958 110 25 7 chr9 44483748 44484030 -97787414 + AluSx SINE Alu 5 291 -21 32 26 0 0 chr9 44485383 44485422 -97786022 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr9 44485555 44485595 -97785849 + AT_rich Low_complexity Low_complexity 1 40 0 741 326 115 40 chr9 44485607 44486518 -97784926 + L2 LINE L2 2329 3312 -1 200 242 16 16 chr9 44486641 44486703 -97784741 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 32 81 0 0 chr9 44487353 44487427 -97784017 + AT_rich Low_complexity Low_complexity 1 74 0 289 274 176 0 chr9 44487805 44487907 -97783537 + MIR3 SINE MIR 83 202 -6 23 0 0 0 chr9 44488757 44488780 -97782664 + AT_rich Low_complexity Low_complexity 1 23 0 312 313 42 72 chr9 44489688 44489778 -97781666 + Charlie2 DNA MER1_type 2 93 -2689 1594 258 59 35 chr9 44489778 44490285 -97781159 - LTR40a LTR ERVL 0 519 1 312 313 42 72 chr9 44490285 44490459 -97780985 + Charlie2 DNA MER1_type 93 258 -2524 229 250 0 0 chr9 44490629 44490681 -97780763 + LTR30 LTR ERV1 1 52 -670 519 117 56 145 chr9 44490685 44490864 -97780580 + LTR12 LTR ERV1 123 285 -429 226 227 0 40 chr9 44490865 44490940 -97780504 + LTR30 LTR ERV1 553 624 -98 517 143 59 76 chr9 44490940 44491059 -97780385 + LTR12 LTR ERV1 362 478 -236 437 315 41 6 chr9 44491063 44491266 -97780178 - MIR SINE MIR -27 235 27 834 201 44 84 chr9 44491370 44491619 -97779825 - MER8 DNA MER2_type 0 239 1 339 265 95 42 chr9 44492218 44492537 -97778907 + MLT1J2 LTR MaLR 40 450 0 603 286 80 50 chr9 44492616 44492979 -97778465 + MLT1I LTR MaLR 2 375 -34 700 286 19 19 chr9 44494662 44494875 -97776569 - MER58A DNA MER1_type -10 214 2 29 0 0 0 chr9 44494996 44495025 -97776419 + AT_rich Low_complexity Low_complexity 1 29 0 2148 98 3 13 chr9 44495364 44495671 -97775773 - AluY SINE Alu -7 304 1 384 218 0 0 chr9 44495787 44495874 -97775570 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 339 216 9 18 chr9 44495874 44495983 -97775461 + L1MC4 LINE L1 2006 6983 -1339 311 333 0 0 chr9 44495903 44495993 -97775451 - L1MC4 LINE L1 -1339 6703 6614 * 240 184 0 0 chr9 44495993 44496042 -97775402 + (TA)n Simple_repeat Simple_repeat 2 50 0 327 344 50 28 chr9 44496134 44496352 -97775092 + L2 LINE L2 1564 1786 -1528 411 232 9 176 chr9 44496362 44496399 -97775045 - L1M4 LINE L1 -2022 4124 4082 1387 227 42 51 chr9 44496399 44496905 -97774539 + MLT1D LTR MaLR 1 501 -4 411 232 9 176 chr9 44496905 44497190 -97774254 - L1M4 LINE L1 -2064 4082 3856 250 336 23 16 chr9 44497564 44497692 -97773752 - L1MEc LINE L1 -5980 281 153 245 313 90 8 chr9 44497813 44497947 -97773497 - L1MEc LINE L1 -5923 147 3 234 281 29 151 chr9 44498486 44498590 -97772854 + L2 LINE L2 2476 2591 -723 1162 259 19 35 chr9 44498590 44498961 -97772483 - MLT1A1 LTR MaLR 0 365 1 234 281 29 151 chr9 44498961 44499004 -97772440 + L2 LINE L2 2591 2587 -727 11406 32 0 0 chr9 44499004 44501132 -97770312 - L1PA3 LINE L1 0 6155 4028 234 281 29 151 chr9 44501132 44501221 -97770223 + L2 LINE L2 2586 2684 -630 1557 201 160 9 chr9 44501222 44501627 -97769817 - MER31B LTR ERV1 0 543 1 501 283 102 54 chr9 44501688 44502130 -97769314 - L1M4 LINE L1 -3574 2572 2110 23 0 0 0 chr9 44502142 44502165 -97769279 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 44502242 44502279 -97769165 + AT_rich Low_complexity Low_complexity 1 37 0 33 0 0 0 chr9 44502873 44502906 -97768538 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr9 44503075 44503113 -97768331 + AT_rich Low_complexity Low_complexity 1 38 0 489 39 13 26 chr9 44503473 44503551 -97767893 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1888 142 3 14 chr9 44503743 44504038 -97767406 + AluSq SINE Alu 1 292 -21 183 333 51 0 chr9 44504465 44504543 -97766901 + MIR SINE MIR 76 157 -105 30 69 0 0 chr9 44505283 44505341 -97766103 + AT_rich Low_complexity Low_complexity 1 58 0 195 259 74 0 chr9 44506593 44506647 -97764797 - L2 LINE L2 -5 3308 3251 690 153 22 7 chr9 44506693 44506830 -97764614 + L1PA16 LINE L1 6026 6164 -2 3854 227 104 34 chr9 44506887 44507057 -97764387 + L1MC4a LINE L1 6517 6674 -1134 282 56 0 0 chr9 44507057 44507093 -97764351 + (TA)n Simple_repeat Simple_repeat 2 37 0 2275 95 0 3 chr9 44507093 44507388 -97764056 - AluY SINE Alu -17 294 1 3854 227 104 34 chr9 44507388 44508247 -97763197 + L1MC4a LINE L1 6674 7562 -246 2250 82 3 10 chr9 44508247 44508552 -97762892 - AluY SINE Alu -5 306 4 3854 227 104 34 chr9 44508552 44508818 -97762626 + L1MC4a LINE L1 7562 7808 0 213 159 0 0 chr9 44509355 44509399 -97762045 + A-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr9 44509401 44509422 -97762022 + AT_rich Low_complexity Low_complexity 1 21 0 200 448 26 0 chr9 44509485 44509601 -97761843 - L2 LINE L2 -623 2691 2573 396 357 31 27 chr9 44509736 44509960 -97761484 - L2 LINE L2 -943 2371 2147 2228 176 19 27 chr9 44510318 44510800 -97760644 + L1MA5 LINE L1 5823 6300 0 26 0 0 0 chr9 44511211 44511237 -97760207 + AT_rich Low_complexity Low_complexity 1 26 0 199 393 25 33 chr9 44513063 44513185 -97758259 - L2 LINE L2 -3 3269 3149 2068 126 13 0 chr9 44513350 44513659 -97757785 - AluSp SINE Alu 0 313 1 2390 68 7 0 chr9 44514248 44514543 -97756901 - AluSp SINE Alu -16 297 1 248 216 0 0 chr9 44514592 44514643 -97756801 - MER58B DNA MER1_type 0 341 291 1015 196 93 47 chr9 44514709 44515030 -97756414 - MER58B DNA MER1_type -5 336 1 258 299 47 16 chr9 44515945 44516072 -97755372 - L1ME LINE L1 -376 5786 5656 603 351 37 3 chr9 44516262 44516615 -97754829 + L1ME3A LINE L1 5540 5904 -266 47 19 0 0 chr9 44516939 44516993 -97754451 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr9 44517062 44517092 -97754352 + AT_rich Low_complexity Low_complexity 1 30 0 230 293 8 16 chr9 44517615 44517738 -97753706 + HAL1 LINE L1 923 1044 -1463 28 29 0 0 chr9 44518933 44518968 -97752476 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 44519366 44519388 -97752056 + AT_rich Low_complexity Low_complexity 1 22 0 303 278 97 42 chr9 44519569 44519713 -97751731 - HAL1b LINE L1 -746 602 451 1419 289 44 68 chr9 44519732 44520575 -97750869 - L1ME1 LINE L1 -27 6139 5317 669 191 48 8 chr9 44520966 44521092 -97750352 + FRAM SINE Alu 1 131 -45 21 57 0 0 chr9 44521101 44521136 -97750308 + AT_rich Low_complexity Low_complexity 1 35 0 399 304 52 40 chr9 44521256 44521681 -97749763 - L1ME1 LINE L1 -1391 4755 4326 1363 199 7 0 chr9 44521718 44521990 -97749454 + L1PA16 LINE L1 5877 6150 -16 727 209 7 0 chr9 44521990 44522129 -97749315 + MER67A LTR ERV1 404 543 0 249 345 23 0 chr9 44522140 44522227 -97749217 + L2 LINE L2 3225 3313 0 1151 206 5 5 chr9 44522248 44522462 -97748982 - MER46A DNA MER2_type -22 214 1 597 262 92 17 chr9 44522463 44522498 -97748946 - L1ME1 LINE L1 -1825 4321 4290 459 0 0 0 chr9 44522498 44522549 -97748895 + (TA)n Simple_repeat Simple_repeat 2 52 0 597 262 92 17 chr9 44522549 44522807 -97748637 - L1ME1 LINE L1 -1856 4290 4006 1575 232 30 24 chr9 44522807 44523237 -97748207 - MER89 LTR ERV1 0 559 28 1922 228 7 15 chr9 44523241 44523644 -97747800 - MER89-int LTR ERV1 -1 6800 6401 1558 282 58 31 chr9 44523644 44524162 -97747282 + MER74A LTR ERVL 1 532 -26 9163 204 25 16 chr9 44524221 44526426 -97745018 - L1PA16 LINE L1 -9 6157 3909 2211 48 44 0 chr9 44526426 44526728 -97744716 - AluY SINE Alu 0 314 1 9163 204 25 16 chr9 44526728 44527664 -97743780 - L1PA16 LINE L1 -2257 3909 2983 523 235 51 3 chr9 44528464 44528648 -97742796 - MLT1A2 LTR MaLR -4 370 162 756 192 11 50 chr9 44528688 44528870 -97742574 - MLT1A2 LTR MaLR -194 180 6 23 33 0 0 chr9 44529659 44529689 -97741755 + AT_rich Low_complexity Low_complexity 1 30 0 2185 117 0 0 chr9 44529748 44530047 -97741397 - AluSx SINE Alu -13 299 1 431 333 7 0 chr9 44530112 44530247 -97741197 + L1ME LINE L1 5506 5641 -521 1672 234 76 0 chr9 44530627 44531008 -97740436 + MER74A LTR ERVL 119 528 -30 207 290 0 0 chr9 44532103 44532172 -97739272 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 22 70 0 0 chr9 44532395 44532438 -97739006 + AT_rich Low_complexity Low_complexity 1 43 0 29 47 0 0 chr9 44532685 44532728 -97738716 + AT_rich Low_complexity Low_complexity 1 43 0 29 70 0 0 chr9 44533096 44533153 -97738291 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chr9 44534482 44534524 -97736920 + AT_rich Low_complexity Low_complexity 1 42 0 188 111 28 0 chr9 44535409 44535445 -97735999 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 266 305 172 29 chr9 44535583 44535757 -97735687 + MIR SINE MIR 64 262 0 455 302 70 35 chr9 44536304 44536659 -97734785 - L1ME LINE L1 -348 5822 5458 24 32 0 0 chr9 44537813 44537844 -97733600 + AT_rich Low_complexity Low_complexity 1 31 0 1856 256 72 53 chr9 44537984 44538893 -97732551 - L1ME1 LINE L1 -5 6161 5244 1807 233 48 41 chr9 44538894 44539354 -97732090 - MER77 LTR ERV1 0 605 143 436 281 92 20 chr9 44539322 44539475 -97731969 - MER77 LTR ERV1 -380 225 62 * 21 0 0 0 chr9 44539557 44539578 -97731866 + AT_rich Low_complexity Low_complexity 1 21 0 8783 98 5 2 chr9 44539578 44541615 -97729829 + L1PA7 LINE L1 4089 6144 -10 305 284 104 26 chr9 44541623 44541891 -97729553 - L1ME1 LINE L1 -973 5173 4885 2672 196 21 45 chr9 44542294 44542915 -97728529 - L1MA6 LINE L1 -1 6299 5694 229 121 61 30 chr9 44543401 44543467 -97727977 + (TA)n Simple_repeat Simple_repeat 2 69 0 1632 199 3 3 chr9 44543494 44543800 -97727644 + AluJb SINE Alu 1 306 -6 1665 173 0 7 chr9 44545078 44545391 -97726053 + AluSx SINE Alu 1 311 0 4647 142 65 33 chr9 44545601 44546110 -97725334 - L1MA9 LINE L1 0 6312 5756 207 0 0 0 chr9 44546110 44546133 -97725311 + (TG)n Simple_repeat Simple_repeat 2 24 0 4647 142 65 33 chr9 44546133 44546573 -97724871 - L1MA9 LINE L1 -556 5756 5332 1916 156 42 31 chr9 44546573 44546933 -97724511 + THE1B LTR MaLR 1 364 0 10308 126 13 6 chr9 44546933 44548501 -97722943 + THE1B-int LTR MaLR 1 1580 0 755 95 0 0 chr9 44548501 44548596 -97722848 + THE1B LTR MaLR 1 95 -280 277 281 88 38 chr9 44548710 44548870 -97722574 - L1MC5 LINE L1 -97 7864 7697 189 0 0 0 chr9 44549363 44549384 -97722060 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 2453 67 0 0 chr9 44549410 44549709 -97721735 - AluY SINE Alu -12 299 1 183 299 111 35 chr9 44549883 44550027 -97721417 - L2 LINE L2 -443 2871 2717 311 327 10 0 chr9 44550689 44550793 -97720651 - MIR SINE MIR -48 214 110 194 276 69 0 chr9 44550910 44550968 -97720476 - L3 LINE CR1 -584 993 932 704 290 53 95 chr9 44551155 44551869 -97719575 - L2 LINE L2 -247 3066 2310 860 288 128 21 chr9 44551869 44552258 -97719186 - LTR33A LTR ERVL -6 517 87 2359 291 61 61 chr9 44552370 44553163 -97718281 - L2 LINE L2 -994 2320 1525 766 230 17 65 chr9 44553163 44553393 -97718051 + MER20 DNA MER1_type 1 219 0 2359 291 61 61 chr9 44553393 44553822 -97717622 - L2 LINE L2 -1788 1526 1098 619 252 0 0 chr9 44557054 44557181 -97714263 - MER45A DNA AcHobo 0 178 52 1380 236 86 16 chr9 44557704 44558090 -97713354 - MLT1C LTR MaLR 0 467 55 440 171 13 0 chr9 44558394 44558470 -97712974 - MER45A DNA AcHobo -1 177 101 567 59 12 0 chr9 44558867 44558952 -97712492 + L1PA13 LINE L1 6078 6163 0 22 0 0 0 chr9 44559614 44559636 -97711808 + AT_rich Low_complexity Low_complexity 1 22 0 2102 119 13 7 chr9 44560252 44560671 -97710773 + AluSq SINE Alu 2 422 0 3035 242 38 11 chr9 44561412 44562173 -97709271 - L1 LINE L1 -944 5202 4380 2099 83 36 0 chr9 44562173 44562450 -97708994 - AluY SINE Alu -24 287 1 3035 242 38 11 chr9 44562450 44562714 -97708730 - L1 LINE L1 -1766 4380 4124 * 4571 228 90 27 chr9 44562710 44563095 -97708349 + L1M1 LINE L1 2917 3276 -4289 1734 181 58 0 chr9 44563095 44563421 -97708023 - MER7A DNA MER2_type 0 346 4 4571 228 90 27 chr9 44563421 44564905 -97706539 + L1M1 LINE L1 3276 4910 -2655 395 263 11 0 chr9 44565417 44565512 -97705932 - Zaphod DNA AcHobo -1 4030 3935 183 42 0 0 chr9 44566007 44566031 -97705413 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1316 227 25 108 chr9 44566247 44566278 -97705166 + MLT1D LTR MaLR 1 33 -472 2046 156 37 6 chr9 44566278 44566631 -97704813 + THE1B LTR MaLR 1 364 0 1316 227 25 108 chr9 44566631 44566884 -97704560 + MLT1D LTR MaLR 33 225 -280 1108 155 10 5 chr9 44566884 44567091 -97704353 - L1MA6 LINE L1 -6 6294 6087 1316 227 25 108 chr9 44567091 44567325 -97704119 + MLT1D LTR MaLR 225 477 -28 272 343 130 39 chr9 44567931 44568368 -97703076 - L2 LINE L2 -2248 1066 590 5490 32 0 9 chr9 44570412 44571172 -97700272 + SVA Other Other 624 1384 -2 271 188 0 47 chr9 44571172 44571236 -97700208 + LTR8A LTR ERV1 567 627 -100 690 241 29 23 chr9 44571342 44571516 -97699928 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr9 44571717 44571762 -97699682 + AT_rich Low_complexity Low_complexity 1 45 0 33 66 0 0 chr9 44571821 44571882 -97699562 + AT_rich Low_complexity Low_complexity 1 61 0 180 0 0 0 chr9 44572784 44572804 -97698640 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 936 336 50 7 chr9 44572834 44573250 -97698194 + LTR16B LTR ERVL 22 455 -9 1934 162 39 25 chr9 44574886 44575245 -97696199 - THE1B LTR MaLR 0 364 1 10566 111 29 5 chr9 44575245 44576789 -97694655 - THE1B-int LTR MaLR 0 1580 1 1935 171 28 22 chr9 44576789 44577151 -97694293 - THE1B LTR MaLR 0 364 1 310 232 127 70 chr9 44577252 44577394 -97694050 - MER69A DNA AcHobo -8 169 20 1007 247 5 0 chr9 44577406 44577629 -97693815 - MER58A DNA MER1_type 0 224 1 559 314 102 8 chr9 44580073 44580309 -97691135 - MIR SINE MIR 0 262 5 329 311 69 9 chr9 44580541 44580793 -97690651 - L1ME LINE L1 -582 5539 5272 48 43 0 0 chr9 44581026 44581095 -97690349 + AT_rich Low_complexity Low_complexity 1 69 0 21 36 0 0 chr9 44581165 44581193 -97690251 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr9 44581397 44581424 -97690020 + AT_rich Low_complexity Low_complexity 1 27 0 1168 182 5 0 chr9 44581451 44581643 -97689801 + AluJb SINE Alu 1 193 -119 1680 205 129 91 chr9 44581657 44582559 -97688885 + LTR1B LTR ERV1 1 1016 -4 629 171 0 0 chr9 44582561 44582672 -97688772 + AluJb SINE Alu 188 298 -14 21 0 0 0 chr9 44582672 44582693 -97688751 + AT_rich Low_complexity Low_complexity 1 21 0 274 243 117 0 chr9 44583376 44583487 -97687957 - MER103 DNA DNA -12 154 31 733 237 81 86 chr9 44583489 44583885 -97687559 + MSTD LTR MaLR 3 396 0 180 325 168 29 chr9 44584175 44584384 -97687060 + MIR SINE MIR 25 262 0 200 268 12 0 chr9 44584486 44584568 -97686876 + (CATATA)n Simple_repeat Simple_repeat 5 87 0 1438 264 54 43 chr9 44585745 44586317 -97685127 - MLT1G LTR MaLR 0 577 13 22 70 0 0 chr9 44586600 44586643 -97684801 + AT_rich Low_complexity Low_complexity 1 43 0 34 99 0 0 chr9 44586832 44586943 -97684501 + AT_rich Low_complexity Low_complexity 1 111 0 21 0 0 0 chr9 44587386 44587407 -97684037 + AT_rich Low_complexity Low_complexity 1 21 0 257 348 68 22 chr9 44588233 44588589 -97682855 - L1ME LINE L1 -288 5876 5496 26 50 0 0 chr9 44588651 44588691 -97682753 + AT_rich Low_complexity Low_complexity 1 40 0 928 276 85 28 chr9 44588973 44589371 -97682073 - MLT1C LTR MaLR 0 467 47 206 366 89 19 chr9 44589463 44589676 -97681768 - L2 LINE L2 -90 3223 2996 702 287 302 22 chr9 44589749 44590179 -97681265 - L2 LINE L2 -747 2567 2259 236 71 48 0 chr9 44590179 44590221 -97681223 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 702 287 302 22 chr9 44590221 44590340 -97681104 - L2 LINE L2 -1055 2259 1864 29 70 0 0 chr9 44592327 44592384 -97679060 + AT_rich Low_complexity Low_complexity 1 57 0 4582 244 59 26 chr9 44592507 44595003 -97676441 + L1PBa LINE L1 3 1640 -5223 3886 206 26 11 chr9 44595103 44596619 -97674825 + L1P5 LINE L1 4205 5739 -415 552 129 0 0 chr9 44596720 44596813 -97674631 + L1PBa LINE L1 1705 1797 -5066 * 2429 195 61 16 chr9 44596799 44597358 -97674086 + L1PBa LINE L1 2079 2662 -4201 3788 230 31 16 chr9 44597376 44598375 -97673069 + L1 LINE L1 2959 3972 -2890 508 226 55 11 chr9 44598474 44598655 -97672789 + L1 LINE L1 3954 4142 -2720 1705 115 74 0 chr9 44598763 44599033 -97672411 + L1PB3 LINE L1 5854 6143 -11 27 0 0 0 chr9 44599130 44599157 -97672287 + AT_rich Low_complexity Low_complexity 1 27 0 1101 231 47 27 chr9 44599256 44599555 -97671889 - LTR68 LTR ERV1 -127 613 309 258 145 65 16 chr9 44599742 44599804 -97671640 - LTR68 LTR ERV1 -653 87 23 542 208 0 0 chr9 44599804 44599910 -97671534 + FRAM SINE Alu 63 168 -8 22 80 0 0 chr9 44600334 44600384 -97671060 + AT_rich Low_complexity Low_complexity 1 50 0 993 189 6 0 chr9 44601192 44601351 -97670093 + MER61D LTR ERV1 242 401 -100 967 182 69 139 chr9 44601351 44601861 -97669583 + MER61D-int LTR ERV1 195 886 -2596 * 5503 179 30 29 chr9 44601860 44602488 -97668956 + MER61D-int LTR ERV1 609 1235 -4033 2321 65 3 50 chr9 44602488 44602811 -97668633 + AluY SINE Alu 1 308 -3 5503 179 30 29 chr9 44602811 44604262 -97667182 + MER61D-int LTR ERV1 1235 2683 -2585 1969 148 27 33 chr9 44604262 44604628 -97666816 + THE1B LTR MaLR 1 364 0 5503 179 30 29 chr9 44604628 44605288 -97666156 + MER61D-int LTR ERV1 2683 4963 -305 1068 194 30 15 chr9 44605285 44605568 -97665876 + MER61D-int LTR ERV1 4524 5343 -1653 * 2834 148 11 19 chr9 44605678 44606117 -97665327 + MER61D-int LTR ERV1 3568 4009 -2987 225 0 0 0 chr9 44606117 44606142 -97665302 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2834 148 11 19 chr9 44606142 44606414 -97665030 + MER61D-int LTR ERV1 4009 6995 -1 2670 165 32 28 chr9 44606415 44606735 -97664709 + MER61D LTR ERV1 1 325 -176 1914 145 3 0 chr9 44606735 44607024 -97664420 + AluSg SINE Alu 2 291 -19 2670 165 32 28 chr9 44607024 44607201 -97664243 + MER61D LTR ERV1 325 500 -1 873 192 19 123 chr9 44607576 44607884 -97663560 + MER93b LTR ERV1 98 373 0 2008 158 39 18 chr9 44607884 44608126 -97663318 + MER1B DNA MER1_type 1 253 -2459 1924 223 39 65 chr9 44608126 44608695 -97662749 - MLT2B3 LTR ERVL 0 554 1 2008 158 39 18 chr9 44608695 44608782 -97662662 + MER1B DNA MER1_type 253 337 -2 514 292 40 32 chr9 44609434 44609711 -97661733 + L1ME3 LINE L1 5884 6162 0 343 313 119 11 chr9 44610269 44610445 -97660999 - MLT1J LTR MaLR -279 232 38 226 288 158 56 chr9 44612168 44612453 -97658991 - MLT1J2 LTR MaLR 0 450 137 3914 161 79 42 chr9 44613219 44614090 -97657354 - MER4D LTR ERV1 0 903 1 821 301 47 23 chr9 44614097 44614439 -97657005 + LTR16B LTR ERVL 109 458 -6 2466 160 39 0 chr9 44614741 44615154 -97656290 + MER57B LTR ERV1 1 429 -5 215 347 28 0 chr9 44615450 44615522 -97655922 + L2 LINE L2 3193 3266 -47 205 274 0 0 chr9 44616882 44616944 -97654500 + A-rich Low_complexity Low_complexity 1 62 0 1070 268 47 70 chr9 44617237 44618104 -97653340 - L1MC4 LINE L1 -258 7550 6811 587 297 73 22 chr9 44618105 44618418 -97653026 - L1M4 LINE L1 -1768 4378 4050 393 278 21 21 chr9 44618436 44618720 -97652724 + L1MEc LINE L1 2034 2317 -4079 185 119 24 0 chr9 44618826 44618868 -97652576 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 270 327 114 24 chr9 44618876 44619130 -97652314 + L1MEc LINE L1 105 381 -6015 1830 161 66 20 chr9 44619133 44619481 -97651963 + THE1B LTR MaLR 1 364 0 258 320 81 36 chr9 44619499 44619746 -97651698 + L2 LINE L2 2933 3190 -123 2028 164 11 16 chr9 44619747 44620124 -97651320 + THE1C LTR MaLR 1 375 0 267 311 47 16 chr9 44620513 44620706 -97650738 - L1M4 LINE L1 -2598 3548 3350 1074 279 89 34 chr9 44620822 44621588 -97649856 - L1M4 LINE L1 -3070 3076 2269 30 27 0 0 chr9 44621614 44621651 -97649793 + AT_rich Low_complexity Low_complexity 1 37 0 579 259 20 10 chr9 44621653 44621854 -97649590 - L1MEc LINE L1 -1488 4727 4525 282 281 95 29 chr9 44621868 44622078 -97649366 - L1MEc LINE L1 -2040 4175 3952 682 278 73 25 chr9 44622085 44622649 -97648795 - L1MEc LINE L1 -2435 3780 3190 28 0 0 0 chr9 44622710 44622738 -97648706 + AT_rich Low_complexity Low_complexity 1 28 0 1012 207 11 0 chr9 44622750 44622929 -97648515 - MLT1A1 LTR MaLR -63 302 122 572 198 0 16 chr9 44622975 44623096 -97648348 - MLT1A1 LTR MaLR -246 119 1 454 227 91 8 chr9 44623207 44623339 -97648105 - L1MA3 LINE L1 0 6305 6163 316 280 24 16 chr9 44623356 44623481 -97647963 - L1MEc LINE L1 -3720 2495 2370 397 247 69 53 chr9 44623541 44623788 -97647656 - L1MEc LINE L1 -4099 2297 2047 345 244 0 0 chr9 44623826 44623908 -97647536 - L1MEc LINE L1 -4330 2066 1985 426 299 22 76 chr9 44624032 44624216 -97647228 - MER96 DNA MER1_type? 0 175 2 23 0 0 0 chr9 44624302 44624325 -97647119 + AT_rich Low_complexity Low_complexity 1 23 0 322 267 67 13 chr9 44624326 44624379 -97647065 - HAL1 LINE L1 -961 1546 1497 189 0 0 0 chr9 44624379 44624400 -97647044 + (TG)n Simple_repeat Simple_repeat 2 22 0 322 267 67 13 chr9 44624400 44624496 -97646948 - HAL1 LINE L1 -1010 1497 1389 365 269 108 24 chr9 44624613 44624910 -97646534 - L1MEc LINE L1 -5142 1254 933 703 325 13 10 chr9 44624951 44625265 -97646179 - L1MEc LINE L1 -5596 800 486 569 185 122 9 chr9 44625479 44625721 -97645723 - MLT1A1 LTR MaLR 0 390 1 1352 204 60 27 chr9 44626068 44626401 -97645043 + MER2 DNA MER2_type 1 344 0 188 292 79 22 chr9 44626849 44626938 -97644506 + L2 LINE L2 3175 3268 -4 1018 271 77 6 chr9 44628013 44628353 -97643091 - MLT1A1 LTR MaLR -1 364 1 25 0 0 0 chr9 44628730 44628755 -97642689 + AT_rich Low_complexity Low_complexity 1 25 0 2379 74 0 7 chr9 44630021 44630331 -97641113 - AluY SINE Alu -3 308 1 4340 78 18 19 chr9 44630609 44631223 -97640221 + L1PA7 LINE L1 5506 6118 -36 1663 63 18 0 chr9 44631223 44631438 -97640006 + L1PA8 LINE L1 5948 6172 0 317 332 71 37 chr9 44631451 44631776 -97639668 + L1MEd LINE L1 586 921 -5284 284 357 75 9 chr9 44632152 44632365 -97639079 + L2 LINE L2 3083 3309 -4 488 327 79 25 chr9 44632399 44632766 -97638678 + L1MEd LINE L1 1436 1822 -4574 1224 280 56 30 chr9 44632816 44633244 -97638200 - MER77 LTR ERV1 -6 599 161 554 228 134 35 chr9 44633264 44633466 -97637978 - MER77 LTR ERV1 -380 225 4 1519 264 43 48 chr9 44634941 44635609 -97635835 + L1M4 LINE L1 3573 4237 -1909 282 283 33 0 chr9 44635623 44635715 -97635729 + GA-rich Low_complexity Low_complexity 6 100 0 180 179 0 0 chr9 44636010 44636049 -97635395 + (CA)n Simple_repeat Simple_repeat 2 40 0 461 234 18 42 chr9 44636054 44636221 -97635223 - L1M4 LINE L1 -2383 3763 3601 * 3675 40 0 0 chr9 44636208 44636655 -97634789 - L1P LINE L1 -2143 4003 3557 5907 19 0 0 chr9 44636655 44637333 -97634111 + L1PA2 LINE L1 5389 6066 -89 687 267 106 45 chr9 44637482 44637778 -97633666 - L1M4 LINE L1 -2519 3627 3350 2028 140 0 0 chr9 44637778 44638086 -97633358 - AluSx SINE Alu -4 308 1 687 267 106 45 chr9 44638086 44638430 -97633014 - L1M4 LINE L1 -2796 3350 2948 50 31 0 0 chr9 44638813 44638877 -97632567 + AT_rich Low_complexity Low_complexity 1 64 0 2586 30 0 0 chr9 44639376 44639678 -97631766 + AluY SINE Alu 1 302 -9 24 32 0 0 chr9 44639825 44639856 -97631588 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr9 44640204 44640242 -97631202 + AT_rich Low_complexity Low_complexity 1 38 0 480 18 0 0 chr9 44640750 44640807 -97630637 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 22 0 0 0 chr9 44641488 44641510 -97629934 + AT_rich Low_complexity Low_complexity 1 22 0 1706 139 0 4 chr9 44641594 44641888 -97629556 + AluSx SINE Alu 35 327 0 22 35 0 0 chr9 44642867 44642896 -97628548 + AT_rich Low_complexity Low_complexity 1 29 0 2598 126 24 5 chr9 44643950 44644370 -97627074 + MSTA LTR MaLR 1 428 0 7624 195 66 10 chr9 44644370 44645933 -97625511 + MSTA-int LTR MaLR 1 1651 0 2370 155 21 16 chr9 44645933 44646359 -97625085 + MSTA LTR MaLR 1 428 0 1613 178 35 0 chr9 44646602 44646889 -97624555 + 7SLRNA srpRNA srpRNA 22 318 -2 22 0 0 0 chr9 44646988 44647010 -97624434 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 44647165 44647201 -97624243 + AT_rich Low_complexity Low_complexity 1 36 0 207 114 0 0 chr9 44647681 44647716 -97623728 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 44648606 44648627 -97622817 + AT_rich Low_complexity Low_complexity 1 21 0 216 214 0 0 chr9 44648693 44648735 -97622709 + A-rich Low_complexity Low_complexity 1 42 0 30 69 0 0 chr9 44649136 44649194 -97622250 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr9 44649571 44649594 -97621850 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 44650510 44650536 -97620908 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr9 44650787 44650817 -97620627 + AT_rich Low_complexity Low_complexity 1 30 0 1862 154 3 16 chr9 44650863 44651168 -97620276 - AluSg SINE Alu -9 301 1 1665 214 106 9 chr9 44651311 44651736 -97619708 - MER31B LTR ERV1 0 466 1 681 335 124 16 chr9 44653800 44654242 -97617202 + L2 LINE L2 2472 2961 -353 209 298 40 96 chr9 44654350 44654548 -97616896 + L2 LINE L2 3119 3305 -8 352 181 14 14 chr9 44654548 44654620 -97616824 - L1M4 LINE L1 -716 5462 5391 1623 108 4 50 chr9 44654702 44654960 -97616484 + THE1B LTR MaLR 119 364 0 1766 168 76 8 chr9 44654970 44655452 -97615992 + L1M4 LINE L1 5188 5698 -480 647 148 4 1 chr9 44655681 44655796 -97615648 - LTR12 LTR ERV1 0 714 73 233 247 34 22 chr9 44655799 44655888 -97615556 - LTR30 LTR ERV1 -80 642 553 901 153 81 94 chr9 44656002 44656237 -97615207 - LTR12 LTR ERV1 -480 234 3 312 315 112 63 chr9 44656248 44656721 -97614723 - L1MEd LINE L1 -5560 559 64 24 32 0 0 chr9 44658010 44658041 -97613403 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr9 44658138 44658164 -97613280 + AT_rich Low_complexity Low_complexity 1 26 0 2525 68 0 0 chr9 44658640 44658951 -97612493 - AluY SINE Alu 0 311 1 245 309 90 5 chr9 44659865 44660053 -97611391 - HAL1 LINE L1 -814 1693 1490 480 309 56 13 chr9 44660072 44660305 -97611139 + HAL1 LINE L1 1491 1733 -774 1674 177 0 7 chr9 44661279 44661587 -97609857 + AluSx SINE Alu 1 306 0 4732 148 52 27 chr9 44661801 44662317 -97609127 - L1MA9 LINE L1 0 6312 5760 243 0 0 0 chr9 44662317 44662344 -97609100 + (TG)n Simple_repeat Simple_repeat 2 28 0 4732 148 52 27 chr9 44662344 44662784 -97608660 - L1MA9 LINE L1 -552 5760 5332 1841 167 42 31 chr9 44662784 44663144 -97608300 + THE1B LTR MaLR 1 364 0 10526 126 10 2 chr9 44663144 44664711 -97606733 + THE1B-int LTR MaLR 1 1580 0 2058 137 39 39 chr9 44664711 44665075 -97606369 + THE1B LTR MaLR 1 364 0 4574 194 70 24 chr9 44665085 44665927 -97605517 - L1MA9 LINE L1 -857 5289 4382 2094 98 36 0 chr9 44665927 44666204 -97605240 - AluY SINE Alu -24 287 1 4574 194 70 24 chr9 44666204 44666477 -97604967 - L1MA9 LINE L1 -1764 4382 4123 4842 229 95 33 chr9 44666501 44666857 -97604587 + L1M1 LINE L1 2940 3272 -4293 1679 181 61 3 chr9 44666857 44667183 -97604261 - MER7A DNA MER2_type 0 346 4 4842 229 95 33 chr9 44667183 44668804 -97602640 + L1M1 LINE L1 3272 5048 -2517 250 301 146 0 chr9 44668917 44669040 -97602404 - L1ME LINE L1 -607 5557 5417 191 326 150 18 chr9 44669058 44669285 -97602159 - L2 LINE L2 -129 3184 2928 982 206 10 19 chr9 44669332 44669541 -97601903 + Tigger6a DNA MER2_type 5 211 -872 1631 220 42 37 chr9 44669541 44669996 -97601448 - MLT1C LTR MaLR 0 467 11 * 2436 191 113 24 chr9 44669987 44670604 -97600840 + Tigger6a DNA MER2_type 216 887 -196 2365 93 0 0 chr9 44670604 44670915 -97600529 + AluY SINE Alu 1 311 0 1942 122 10 55 chr9 44673532 44673844 -97597600 + AluSx SINE Alu 1 298 -14 228 219 12 37 chr9 44673846 44673928 -97597516 - L1ME LINE L1 -806 5378 5299 2403 46 7 20 chr9 44675800 44676104 -97595340 - AluY SINE Alu -11 300 1 14734 132 91 13 chr9 44676523 44679037 -97592407 + L1M1 LINE L1 729 3438 -4127 266 380 38 20 chr9 44679289 44679459 -97591985 - MIR SINE MIR -75 187 7 2454 66 0 0 chr9 44679798 44680100 -97591344 - AluY SINE Alu -9 302 1 336 177 44 87 chr9 44681311 44681439 -97590005 + LTR48 LTR ERV1 540 623 -30 262 265 20 10 chr9 44681794 44681892 -97589552 - LTR41 LTR ERVL -672 101 3 2258 77 0 7 chr9 44682318 44682603 -97588841 + AluY SINE Alu 1 283 -28 668 24 24 0 chr9 44682603 44682688 -97588756 + (TATAA)n Simple_repeat Simple_repeat 4 90 0 22 0 0 0 chr9 44683038 44683060 -97588384 + AT_rich Low_complexity Low_complexity 1 22 0 2493 52 10 0 chr9 44683211 44683517 -97587927 - AluY SINE Alu -2 309 1 713 270 52 26 chr9 44683621 44683851 -97587593 + L2 LINE L2 2392 2627 -687 1066 228 24 62 chr9 44683857 44684146 -97587298 + MER70B LTR ERVL 4 281 -297 248 130 78 78 chr9 44685431 44685508 -97585936 + MER72 LTR ERV1 646 722 0 321 367 102 40 chr9 44685732 44686056 -97585388 + L1MEd LINE L1 223 566 -5553 719 164 109 6 chr9 44686180 44686345 -97585099 + L1MB2 LINE L1 5986 6167 -4 227 319 32 0 chr9 44686460 44686554 -97584890 + L1MEd LINE L1 2645 2741 -3388 2243 104 0 0 chr9 44686565 44686854 -97584590 + AluSc SINE Alu 1 289 -20 293 264 0 50 chr9 44686987 44687108 -97584336 + L1MEd LINE L1 2908 3022 -3107 313 275 99 42 chr9 44687271 44687765 -97583679 + L1M4 LINE L1 4881 5402 -744 186 71 0 0 chr9 44687826 44687854 -97583590 + (TG)n Simple_repeat Simple_repeat 2 29 0 2320 110 3 0 chr9 44688252 44688562 -97582882 - AluSp SINE Alu 0 313 3 203 209 23 0 chr9 44688658 44688701 -97582743 + CT-rich Low_complexity Low_complexity 1 44 0 906 259 122 22 chr9 44689088 44689490 -97581954 + LTR16A1 LTR ERVL 16 457 0 1940 142 0 35 chr9 44689721 44690032 -97581412 - AluSx SINE Alu -10 302 3 192 359 68 19 chr9 44690094 44690197 -97581247 + L2 LINE L2 3206 3313 0 239 292 93 6 chr9 44691567 44691728 -97579716 - HAL1 LINE L1 -814 1693 1519 408 300 70 13 chr9 44691774 44692004 -97579440 + HAL1 LINE L1 1491 1733 -774 1765 166 0 7 chr9 44692996 44693304 -97578140 + AluSx SINE Alu 1 306 0 4763 150 48 27 chr9 44693518 44694034 -97577410 - L1MA9 LINE L1 0 6312 5765 372 22 0 0 chr9 44694034 44694079 -97577365 + (TG)n Simple_repeat Simple_repeat 2 46 0 4763 150 48 27 chr9 44694079 44694523 -97576921 - L1MA9 LINE L1 -547 5765 5332 1846 167 45 31 chr9 44694523 44694882 -97576562 + THE1B LTR MaLR 1 364 0 10707 122 11 0 chr9 44694882 44696445 -97574999 + THE1B-int LTR MaLR 1 1580 0 2211 121 36 36 chr9 44696445 44696809 -97574635 + THE1B LTR MaLR 1 364 0 4811 196 65 16 chr9 44696819 44697667 -97573777 - L1MA9 LINE L1 -857 5289 4373 2083 91 40 0 chr9 44697667 44697943 -97573501 - AluY SINE Alu -24 287 1 4811 196 65 16 chr9 44697943 44698207 -97573237 - L1MA9 LINE L1 -1773 4373 4123 * 5309 224 84 30 chr9 44698202 44698592 -97572852 + L1M1 LINE L1 2917 3284 -4281 1802 191 27 0 chr9 44698592 44698927 -97572517 - MER7A DNA MER2_type -1 345 4 5309 224 84 30 chr9 44698927 44700606 -97570838 + L1M1 LINE L1 3284 5104 -2461 2928 191 25 0 chr9 44700729 44701257 -97570187 + Tigger1 DNA MER2_type 1 541 -1877 514 202 0 0 chr9 44701257 44701351 -97570093 - FLAM_A SINE Alu -48 94 1 729 275 12 0 chr9 44701437 44701608 -97569836 + MER90 LTR ERV1 56 228 -386 805 250 171 0 chr9 44701631 44701847 -97569597 + MER90 LTR ERV1 361 613 -1 708 212 101 40 chr9 44703508 44703706 -97567738 + MIR SINE MIR 2 211 -51 249 275 162 36 chr9 44703798 44703965 -97567479 - L2 LINE L2 -5 3308 3121 303 258 97 24 chr9 44704075 44704199 -97567245 - L1M4 LINE L1 -1328 4818 4686 315 235 281 5 chr9 44704257 44704438 -97567006 - MLT1G1 LTR MaLR -114 453 148 299 244 24 158 chr9 44704418 44704496 -97566948 - MLT1H LTR MaLR -342 213 126 * 1908 117 3 27 chr9 44704496 44704795 -97566649 + AluSc SINE Alu 1 292 -17 299 244 24 158 chr9 44704795 44704962 -97566482 - MLT1H LTR MaLR -429 126 1 1275 179 14 57 chr9 44705414 44705711 -97565733 - L1MB7 LINE L1 -170 6014 5731 375 262 8 63 chr9 44706053 44706179 -97565265 - MER21-int LTR ERV1 -55 4136 4018 1934 175 73 12 chr9 44706184 44706715 -97564729 - L1MB7 LINE L1 -439 5739 5169 2355 136 3 35 chr9 44706715 44707090 -97564354 - THE1B LTR MaLR 0 364 2 1934 175 73 12 chr9 44707090 44707163 -97564281 - L1MB7 LINE L1 -1009 5169 5102 243 91 18 73 chr9 44707165 44707220 -97564224 + MSTD LTR MaLR 1 52 -344 3538 139 25 11 chr9 44707220 44707832 -97563612 + L1MB3 LINE L1 5536 6155 -28 2549 158 35 12 chr9 44707884 44708315 -97563129 + MLT1C LTR MaLR 27 467 0 2392 261 45 38 chr9 44708330 44709068 -97562376 - MER21-int LTR ERV1 -1021 3170 2428 6976 178 24 25 chr9 44709097 44710267 -97561177 - MSTA-int LTR MaLR -354 1297 128 1905 154 0 19 chr9 44710267 44710585 -97560859 - AluSx SINE Alu 0 312 1 6976 178 24 25 chr9 44710585 44710713 -97560731 - MSTA-int LTR MaLR -1523 128 1 1680 155 163 39 chr9 44710713 44711094 -97560350 - MSTA LTR MaLR 0 428 1 437 313 74 62 chr9 44711293 44711629 -97559815 + L1MEd LINE L1 144 483 -5722 237 178 0 0 chr9 44711720 44711765 -97559679 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 228 109 0 0 chr9 44711765 44711811 -97559633 - LTR66 LTR ERVL -171 439 394 597 309 109 96 chr9 44712121 44712538 -97558906 + L1MEd LINE L1 188 598 -5607 1221 106 0 0 chr9 44712538 44712718 -97558726 + (TA)n Simple_repeat Simple_repeat 1 180 0 597 309 109 96 chr9 44712718 44713174 -97558270 + L1MEd LINE L1 598 1072 -5133 463 234 3 1 chr9 44713178 44713295 -97558149 + L1M2 LINE L1 1640 1978 -4238 276 281 16 0 chr9 44713295 44713359 -97558085 + MER52A LTR ERV1 1 65 -1690 2461 233 152 14 chr9 44713670 44714300 -97557144 + MER52A LTR ERV1 61 777 -978 * 4803 166 38 26 chr9 44714276 44715109 -97556335 + MER52A LTR ERV1 913 1755 0 303 281 73 73 chr9 44715109 44715383 -97556061 + L1MEd LINE L1 1743 2016 -4380 451 243 3 1 chr9 44715655 44715772 -97555672 + L1M2 LINE L1 1640 1978 -4238 288 266 16 0 chr9 44715772 44715836 -97555608 + MER52A LTR ERV1 1 65 -1690 6246 206 201 16 chr9 44716147 44717578 -97553866 + MER52A LTR ERV1 61 1755 0 2937 235 78 41 chr9 44717578 44718167 -97553277 + L1MEd LINE L1 1743 2309 -3906 1918 123 16 32 chr9 44718167 44718477 -97552967 - AluSq SINE Alu -8 305 1 2937 235 78 41 chr9 44718477 44719281 -97552163 + L1MEd LINE L1 2309 3172 -3043 1937 123 3 3 chr9 44719281 44719565 -97551879 + AluSx SINE Alu 3 286 -26 2937 235 78 41 chr9 44719565 44719791 -97551653 + L1MEd LINE L1 3172 3388 -2827 280 132 75 0 chr9 44719788 44719841 -97551603 - L1MC3 LINE L1 -534 7251 7195 * 244 320 0 10 chr9 44719841 44719938 -97551506 - MLT1F1 LTR MaLR -436 131 36 512 158 173 0 chr9 44719941 44720074 -97551370 - L1MC3 LINE L1 -689 7096 6941 238 300 53 49 chr9 44720681 44720924 -97550520 - L2 LINE L2 -521 2793 2550 366 284 70 65 chr9 44720977 44721318 -97550126 - L2 LINE L2 -652 2662 2320 443 207 23 157 chr9 44721425 44721642 -97549802 - L1ME LINE L1 -359 5762 5575 257 239 210 18 chr9 44722747 44722896 -97548548 + MIR SINE MIR 18 144 -64 767 165 0 8 chr9 44724410 44724543 -97546901 + FLAM_C SINE Alu 2 133 0 291 259 74 51 chr9 44724705 44724903 -97546541 + L1ME4a LINE L1 5689 5887 -234 2224 247 32 40 chr9 44724939 44724992 -97546452 + L1M4c LINE L1 1609 1661 -4721 2139 102 0 23 chr9 44724992 44725296 -97546148 - AluSx SINE Alu -14 298 2 2224 247 32 40 chr9 44725296 44726731 -97544713 + L1M4c LINE L1 1661 3193 -3189 21 36 0 0 chr9 44727488 44727516 -97543928 + AT_rich Low_complexity Low_complexity 1 28 0 1142 241 41 37 chr9 44727517 44727988 -97543456 + L1M4c LINE L1 2005 2486 -3896 1294 61 0 0 chr9 44728113 44728276 -97543168 + AluSg SINE Alu 1 163 -147 234 187 28 75 chr9 44728337 44728444 -97543000 + (CCCCAA)n Simple_repeat Simple_repeat 1 102 0 22 21 0 62 chr9 44728893 44728917 -97542527 + AT_rich Low_complexity Low_complexity 1 22 -23 1755 126 47 4 chr9 44728917 44729077 -97542367 - AluSq SINE Alu -22 291 113 261 0 0 0 chr9 44729077 44729106 -97542338 + (TG)n Simple_repeat Simple_repeat 2 30 0 1755 126 47 4 chr9 44729106 44729222 -97542222 - AluSq SINE Alu -200 113 3 22 21 0 62 chr9 44729222 44729245 -97542199 + AT_rich Low_complexity Low_complexity 22 45 0 1373 182 29 22 chr9 44729388 44729663 -97541781 + AluJo SINE Alu 13 289 -23 39 74 0 0 chr9 44729825 44729906 -97541538 + AT_rich Low_complexity Low_complexity 1 81 0 513 316 104 36 chr9 44729921 44730327 -97541117 - L1MC/D LINE L1 -396 5725 5354 4564 252 28 24 chr9 44730411 44731022 -97540422 + L1PA15-16 LINE L1 1954 2561 -4288 2018 126 7 0 chr9 44731022 44731315 -97540129 - AluSx SINE Alu -17 295 1 4564 252 28 24 chr9 44731315 44732883 -97538561 + L1PA15-16 LINE L1 2561 4147 -2702 3388 190 29 3 chr9 44732891 44733507 -97537937 + MSTB-int LTR MaLR 1020 1651 0 1743 237 16 0 chr9 44733507 44733878 -97537566 + MSTB LTR MaLR 1 377 -49 2106 224 20 6 chr9 44733880 44734370 -97537074 + L1M4c LINE L1 3683 4179 -2203 1720 132 32 4 chr9 44734370 44734646 -97536798 + AluSx SINE Alu 2 286 -22 255 93 0 0 chr9 44734646 44734689 -97536755 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 341 183 0 14 chr9 44734696 44734767 -97536677 + L1M4c LINE L1 3005 3074 -3308 214 311 0 33 chr9 44735623 44735713 -97535731 + C-rich Low_complexity Low_complexity 4 90 0 565 231 67 87 chr9 44736949 44737673 -97533771 + HSREP522 Satellite telomeric 1 709 -123 256 274 76 61 chr9 44738974 44739171 -97532273 - L1MDb LINE L1 -5756 653 454 807 324 106 21 chr9 44739178 44739651 -97531793 - L1MDb LINE L1 -5793 616 104 24 0 0 0 chr9 44739778 44739802 -97531642 + AT_rich Low_complexity Low_complexity 1 24 0 1934 118 4 0 chr9 44740176 44740455 -97530989 - AluSc SINE Alu -19 290 11 235 208 0 0 chr9 44740698 44740746 -97530698 + MER67B LTR ERV1 38 85 -576 287 62 0 107 chr9 44740943 44741055 -97530389 + (CCCCCA)n Simple_repeat Simple_repeat 5 104 0 1100 142 38 28 chr9 44741517 44741729 -97529715 + AluJo SINE Alu 1 214 -98 581 241 47 70 chr9 44741832 44742089 -97529355 - MIR SINE MIR -7 255 1 219 293 104 19 chr9 44742375 44742481 -97528963 - L2 LINE L2 0 3272 3158 2252 83 0 3 chr9 44743152 44743452 -97527992 + AluSg SINE Alu 1 299 -11 372 333 23 33 chr9 44743455 44743594 -97527850 + MIR SINE MIR 28 160 -48 604 269 211 5 chr9 44743871 44744079 -97527365 + MIR SINE MIR 5 255 -7 297 329 12 0 chr9 44744620 44744705 -97526739 - MIR3 SINE MIR -30 178 93 206 125 0 0 chr9 44745369 44745401 -97526043 - MIR SINE MIR -10 252 221 374 314 21 14 chr9 44745674 44745814 -97525630 + MIR SINE MIR 35 175 -87 443 305 40 7 chr9 44746072 44746223 -97525221 + MIR3 SINE MIR 19 174 -34 231 226 19 0 chr9 44746473 44746526 -97524918 + L3b LINE CR1 1335 1388 -195 269 219 281 0 chr9 44747122 44747218 -97524226 + L2 LINE L2 3190 3312 -1 728 266 0 31 chr9 44747234 44747426 -97524018 + MIR SINE MIR 77 262 0 392 303 42 0 chr9 44747427 44747546 -97523898 - MIR SINE MIR -55 207 84 2699 157 7 4 chr9 44748784 44749248 -97522196 + TAR1 Satellite telomeric 1604 2068 -43 439 113 0 87 chr9 44749393 44749588 -97521856 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 9558 224 11 36 chr9 44749644 44750384 -97521060 - L1M4 LINE L1 -927 5219 4461 1018 171 0 0 chr9 44750384 44750560 -97520884 - AluSp SINE Alu -2 311 136 9558 224 11 36 chr9 44750560 44752794 -97518650 - L1M4 LINE L1 -1685 4461 2280 388 279 27 9 chr9 44753027 44753138 -97518306 - MER5B DNA MER1_type -3 175 63 441 36 0 0 chr9 44753138 44753193 -97518251 + (TC)n Simple_repeat Simple_repeat 2 56 0 1079 237 170 74 chr9 44753788 44754277 -97517167 + MLT1F LTR MaLR 6 541 -1 32 0 0 0 chr9 44755583 44755615 -97515829 + AT_rich Low_complexity Low_complexity 1 32 0 214 365 218 19 chr9 44756013 44756169 -97515275 + MIR3 SINE MIR 16 202 -6 183 308 75 47 chr9 44756505 44756612 -97514832 - L2 LINE L2 -7 3306 3197 29 47 0 0 chr9 44757542 44757585 -97513859 + AT_rich Low_complexity Low_complexity 1 43 0 201 39 0 0 chr9 44758724 44758750 -97512694 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 194 338 0 50 chr9 44759207 44759287 -97512157 - L2 LINE L2 0 3272 3197 549 211 55 0 chr9 44759537 44759646 -97511798 - MIR3 SINE MIR -12 196 82 993 246 23 0 chr9 44760214 44760434 -97511010 - MIR SINE MIR 0 262 38 512 90 26 0 chr9 44761787 44761865 -97509579 + MADE1 DNA Mariner 1 80 0 1932 137 55 3 chr9 44762280 44762572 -97508872 + AluSx SINE Alu 1 307 -5 932 187 20 0 chr9 44762572 44762773 -97508671 + AluSg/x SINE Alu 134 337 0 2406 102 0 6 chr9 44763161 44763476 -97507968 + AluSq SINE Alu 1 313 0 3928 172 54 58 chr9 44764660 44764842 -97506602 + L1MC2 LINE L1 5224 5405 -939 1975 114 33 0 chr9 44764842 44765144 -97506300 + L1PA16 LINE L1 5842 6157 -9 3928 172 54 58 chr9 44765144 44766023 -97505421 + L1MC2 LINE L1 5405 6288 -56 2549 52 0 3 chr9 44766023 44766329 -97505115 - AluY SINE Alu -6 305 1 208 333 0 0 chr9 44768178 44768235 -97503209 - MER5A DNA MER1_type -64 125 69 327 25 0 0 chr9 44768236 44768276 -97503168 + (CA)n Simple_repeat Simple_repeat 2 41 0 1006 265 94 33 chr9 44768882 44769386 -97502058 + L2 LINE L2 2606 3148 -165 645 223 122 77 chr9 44769827 44770068 -97501376 + L1MC5 LINE L1 7349 7578 -383 2086 102 0 54 chr9 44770068 44770381 -97501063 + AluSx SINE Alu 1 296 -16 645 223 122 77 chr9 44770381 44770712 -97500732 + L1MC5 LINE L1 7578 7947 -14 1519 211 0 30 chr9 44770933 44771232 -97500212 + AluJo SINE Alu 11 300 -12 2363 74 14 0 chr9 44771430 44771727 -97499717 - AluY SINE Alu -10 301 1 22 70 0 0 chr9 44771787 44771830 -97499614 + AT_rich Low_complexity Low_complexity 1 43 0 1602 157 77 10 chr9 44772364 44772676 -97498768 + THE1C LTR MaLR 43 375 0 9920 106 36 42 chr9 44772676 44772799 -97498645 + THE1C-int LTR MaLR 1 123 -1457 2208 126 3 0 chr9 44772799 44773109 -97498335 + AluSq SINE Alu 1 311 -2 9920 106 36 42 chr9 44773109 44774573 -97496871 + THE1C-int LTR MaLR 123 1579 -1 2076 141 53 14 chr9 44774574 44774935 -97496509 + THE1C LTR MaLR 1 375 0 288 250 89 89 chr9 44775175 44775294 -97496150 + MIR SINE MIR 81 202 -60 2191 116 0 0 chr9 44775294 44775597 -97495847 - AluSc SINE Alu -6 303 1 288 250 89 89 chr9 44775597 44775657 -97495787 + MIR SINE MIR 201 260 -2 239 333 55 30 chr9 44776765 44776966 -97494478 - MER67A LTR ERV1 0 543 338 2335 70 0 7 chr9 44777012 44777311 -97494133 + AluY SINE Alu 1 297 -14 2092 124 3 0 chr9 44777735 44778026 -97493418 + AluSc SINE Alu 11 302 -7 8643 183 11 21 chr9 44778088 44779029 -97492415 + L1PA14 LINE L1 2371 3320 -2826 2023 156 7 0 chr9 44779029 44779337 -97492107 + AluSx SINE Alu 1 310 -2 8643 183 11 21 chr9 44779337 44780321 -97491123 + L1PA14 LINE L1 3320 4276 -1870 5970 112 8 7 chr9 44780322 44782076 -97489368 + L1PA14 LINE L1 4423 6161 0 4693 129 37 23 chr9 44782413 44782748 -97488696 - L1PB3 LINE L1 -5 6149 5820 2101 115 0 0 chr9 44782748 44783044 -97488400 - AluSg1 SINE Alu -13 296 1 4693 129 37 23 chr9 44783044 44783356 -97488088 - L1PB3 LINE L1 -334 5820 5484 189 0 0 0 chr9 44783356 44783377 -97488067 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4693 129 37 23 chr9 44783377 44783629 -97487815 - L1PB3 LINE L1 -670 5484 5237 640 86 0 0 chr9 44784905 44784998 -97486446 - Alu SINE Alu 0 312 220 2034 58 36 11 chr9 44785008 44785310 -97486134 - AluY SINE Alu 0 309 1 261 316 0 0 chr9 44786299 44786375 -97485069 - MER31-int LTR ERV1 -4089 847 772 1958 170 16 32 chr9 44787718 44788160 -97483284 + MER66B LTR ERV1 52 486 0 265 277 15 15 chr9 44789129 44789194 -97482250 + MIR3 SINE MIR 14 78 -130 228 303 118 23 chr9 44790242 44790684 -97480760 - L1ME3A LINE L1 -222 5948 5465 918 201 10 19 chr9 44791008 44791217 -97480227 + Tigger6a DNA MER2_type 5 211 -872 1452 224 42 37 chr9 44791217 44791672 -97479772 - MLT1C LTR MaLR 0 467 11 * 3045 196 93 24 chr9 44791669 44792280 -97479164 + Tigger6a DNA MER2_type 220 902 -695 2115 133 0 0 chr9 44792280 44792574 -97478870 + AluY SINE Alu 1 294 -17 3045 196 93 24 chr9 44792574 44792770 -97478674 + Tigger6a DNA MER2_type 902 1083 0 1298 191 44 14 chr9 44793288 44793582 -97477862 - MER67D LTR ERV1 -108 406 104 1714 126 0 0 chr9 44793624 44793863 -97477581 - AluSc SINE Alu -70 239 1 749 193 13 52 chr9 44793863 44794124 -97477320 - MER67B LTR ERV1 -397 225 1 44 35 0 0 chr9 44794535 44794593 -97476851 + AT_rich Low_complexity Low_complexity 1 58 0 822 128 114 0 chr9 44794779 44794928 -97476516 + AluY SINE Alu 118 283 -28 1148 240 56 28 chr9 44795272 44795685 -97475759 + MER67B LTR ERV1 1 418 -243 239 53 0 0 chr9 44796723 44796761 -97474683 + AluY SINE Alu 262 299 -1 1984 137 0 0 chr9 44797597 44797874 -97473570 - AluSc SINE Alu -32 277 1 306 273 38 61 chr9 44798758 44798890 -97472554 + L1ME LINE L1 921 1049 -5156 424 234 3 1 chr9 44798913 44799030 -97472414 + L1M2 LINE L1 1640 1978 -4238 251 281 16 0 chr9 44799030 44799094 -97472350 + MER52A LTR ERV1 1 65 -1690 2205 226 107 15 chr9 44799458 44800046 -97471398 + MER52A LTR ERV1 136 777 -978 * 4431 161 40 24 chr9 44800021 44800853 -97470591 + MER52A LTR ERV1 911 1755 0 2708 239 69 42 chr9 44800853 44801442 -97470002 + L1ME LINE L1 1743 2315 -3900 2045 129 0 16 chr9 44801442 44801752 -97469692 - AluSq SINE Alu -8 305 1 2708 239 69 42 chr9 44801752 44802570 -97468874 + L1ME LINE L1 2315 3173 -3042 1987 140 0 3 chr9 44802570 44802855 -97468589 + AluSx SINE Alu 3 286 -26 2708 239 69 42 chr9 44802855 44803078 -97468366 + L1ME LINE L1 3173 3388 -2827 312 143 36 0 chr9 44803075 44803131 -97468313 - L1MC3 LINE L1 -534 7251 7194 * 263 297 0 11 chr9 44803135 44803226 -97468218 - MLT1F1 LTR MaLR -442 125 36 603 157 164 0 chr9 44803229 44803363 -97468081 - L1MC3 LINE L1 -689 7096 6941 197 304 53 49 chr9 44803968 44804211 -97467233 - L2 LINE L2 -521 2793 2550 345 264 79 73 chr9 44804264 44804605 -97466839 - L2 LINE L2 -652 2662 2320 486 246 43 114 chr9 44804712 44805060 -97466384 - L1ME LINE L1 -359 5762 5435 258 235 207 18 chr9 44805630 44805768 -97465676 + MIR SINE MIR 18 144 -64 821 165 0 8 chr9 44807290 44807423 -97464021 + FLAM_C SINE Alu 2 133 0 238 256 85 66 chr9 44807556 44807783 -97463661 + L1ME LINE L1 5664 5887 -234 445 127 0 89 chr9 44807872 44807951 -97463493 - AluSx SINE Alu -13 299 228 1162 123 0 0 chr9 44807951 44808106 -97463338 - AluSx SINE Alu -155 157 3 2742 221 58 26 chr9 44808107 44809542 -97461902 + L1MCa LINE L1 1758 3237 -3189 28 0 0 0 chr9 44810297 44810325 -97461119 + AT_rich Low_complexity Low_complexity 1 28 0 14204 181 43 46 chr9 44810326 44813958 -97457486 + L1M4c LINE L1 2005 5637 -745 1375 132 15 0 chr9 44814067 44814272 -97457172 + LTR8A LTR ERV1 100 307 -420 537 104 0 0 chr9 44814391 44814458 -97456986 - AluSp/q SINE Alu -93 220 154 * 772 115 0 0 chr9 44814454 44814550 -97456894 + AluSq/x SINE Alu 34 129 -183 198 0 0 0 chr9 44814561 44814583 -97456861 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 379 291 53 46 chr9 44816559 44816710 -97454734 + L2 LINE L2 3121 3272 0 182 137 78 78 chr9 44819384 44819435 -97452009 + MER5A DNA MER1_type 83 133 -56 198 0 0 0 chr9 44820358 44820380 -97451064 + (CCCCCT)n Simple_repeat Simple_repeat 1 22 0 279 157 0 0 chr9 44820565 44820616 -97450828 + GA-rich Low_complexity Low_complexity 4 54 0 21 0 0 0 chr9 44821091 44821112 -97450332 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 44821822 44821844 -97449600 + AT_rich Low_complexity Low_complexity 1 22 0 222 317 0 0 chr9 44822501 44822561 -97448883 + (CATA)n Simple_repeat Simple_repeat 4 63 0 9386 44 9 1 chr9 44823800 44824862 -97446582 - MER11C LTR ERVK 0 1071 1 2110 37 0 71 chr9 44825464 44825759 -97445685 - AluY SINE Alu -12 299 26 2727 141 45 7 chr9 44826700 44827147 -97444297 + MER4C LTR ERV1 2 465 0 695 328 23 8 chr9 44827945 44828201 -97443243 - MIR SINE MIR -1 261 2 510 312 110 13 chr9 44828862 44829099 -97442345 + MIR SINE MIR 3 262 0 528 283 61 42 chr9 44829666 44829878 -97441566 - MLT1K LTR MaLR -1 587 372 1236 284 70 32 chr9 44830036 44830394 -97441050 - MLT1J LTR MaLR 0 511 129 2008 130 57 41 chr9 44830394 44830763 -97440681 - THE1C LTR MaLR 0 375 1 1236 284 70 32 chr9 44830763 44830872 -97440572 - MLT1J LTR MaLR -382 129 26 306 0 0 0 chr9 44831207 44831241 -97440203 + (CA)n Simple_repeat Simple_repeat 2 35 0 279 266 71 44 chr9 44831670 44831783 -97439661 + MIR3 SINE MIR 67 182 -26 1120 203 28 0 chr9 44832269 44832481 -97438963 + MER20 DNA MER1_type 1 218 -1 4819 170 69 45 chr9 44832646 44833692 -97437752 - MER11C LTR ERVK 0 1071 1 274 309 43 36 chr9 44834877 44835016 -97436428 - MIR SINE MIR -111 151 12 238 261 0 0 chr9 44835139 44835185 -97436259 + MER5A DNA MER1_type 59 104 -85 306 211 42 0 chr9 44835358 44835429 -97436015 + MER5A DNA MER1_type 116 189 0 204 40 0 0 chr9 44835661 44835686 -97435758 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr9 44835954 44835976 -97435468 + AT_rich Low_complexity Low_complexity 1 22 0 458 211 96 36 chr9 44836201 44836367 -97435077 - L2 LINE L2 -1 3312 3137 514 314 57 41 chr9 44836825 44837070 -97434374 - MIR SINE MIR 0 262 14 184 287 58 58 chr9 44837249 44837336 -97434108 + MIR SINE MIR 159 245 -17 744 107 48 0 chr9 44837533 44837636 -97433808 + AluSq/x SINE Alu 2 109 -204 214 204 148 0 chr9 44837780 44837834 -97433610 - L2 LINE L2 0 3313 3252 903 188 52 96 chr9 44838600 44838829 -97432615 + MER20 DNA MER1_type 1 219 0 244 273 23 45 chr9 44839570 44839658 -97431786 + L2 LINE L2 3182 3267 -46 240 318 55 47 chr9 44840973 44841016 -97430428 + L1ME LINE L1 5317 5358 -763 2303 110 0 0 chr9 44841016 44841324 -97430120 + AluSg SINE Alu 1 308 -2 240 318 55 47 chr9 44841324 44841516 -97429928 + L1ME LINE L1 5358 5554 -567 507 270 43 99 chr9 44842115 44842419 -97429025 - Charlie8 DNA MER1_type -1928 489 203 1462 253 59 48 chr9 44842974 44843328 -97428116 + L1MDb LINE L1 769 1117 -5289 2253 92 3 3 chr9 44843328 44843621 -97427823 - AluSc SINE Alu -16 293 1 1462 253 59 48 chr9 44843621 44844093 -97427351 + L1MDb LINE L1 1117 2837 -3569 223 267 17 0 chr9 44844546 44844606 -97426838 - L3b LINE CR1 -176 1407 1347 497 319 34 10 chr9 44845258 44845462 -97425982 + MIR SINE MIR 53 261 -1 233 185 12 136 chr9 44845547 44845628 -97425816 - L2 LINE L2 0 3272 3202 2137 106 0 0 chr9 44846670 44846952 -97424492 + AluSc SINE Alu 1 282 -27 218 375 17 0 chr9 44847175 44847295 -97424149 - L3b LINE CR1 -176 1407 1286 3842 182 45 15 chr9 44848618 44849372 -97422072 - L1MC2 LINE L1 -9 6335 5559 22 0 0 0 chr9 44849585 44849607 -97421837 + AT_rich Low_complexity Low_complexity 1 22 0 30 69 0 0 chr9 44850212 44850270 -97421174 + AT_rich Low_complexity Low_complexity 1 58 0 3049 72 5 11 chr9 44850510 44850886 -97420558 - THE1C LTR MaLR -1 374 1 22 35 0 0 chr9 44850888 44850917 -97420527 + AT_rich Low_complexity Low_complexity 1 29 0 440 202 56 0 chr9 44851588 44851677 -97419767 + FLAM_C SINE Alu 35 128 -15 2632 110 5 21 chr9 44851839 44852221 -97419223 + L1PA13 LINE L1 5777 6152 -11 21 0 0 0 chr9 44852221 44852242 -97419202 + AT_rich Low_complexity Low_complexity 1 21 0 1753 99 14 39 chr9 44852352 44852634 -97418810 + AluY SINE Alu 29 303 -8 2352 97 0 0 chr9 44853632 44853943 -97417501 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 44854417 44854438 -97417006 + AT_rich Low_complexity Low_complexity 1 21 0 230 325 111 65 chr9 44855880 44856339 -97415105 + L1MEd LINE L1 78 557 -5562 1037 128 76 107 chr9 44856352 44856624 -97414820 + LTR12 LTR ERV1 3 1552 -480 228 258 34 22 chr9 44856701 44856790 -97414654 + LTR30 LTR ERV1 553 642 -80 679 130 4 1 chr9 44856793 44856908 -97414536 + LTR12 LTR ERV1 73 714 0 995 251 134 89 chr9 44856947 44857872 -97413572 + L1ME3A LINE L1 4835 5840 -330 4909 151 68 4 chr9 44857872 44858706 -97412738 + L1MC1 LINE L1 5435 6322 -11 995 251 134 89 chr9 44858706 44859041 -97412403 + L1ME3A LINE L1 5840 6159 -11 270 280 101 24 chr9 44859053 44859221 -97412223 + L1 LINE L1 3359 3539 -2607 776 274 91 11 chr9 44859323 44859685 -97411759 + L1 LINE L1 3714 4104 -2042 257 243 40 0 chr9 44859684 44859758 -97411686 + L1 LINE L1 4633 4709 -1437 * 298 269 34 69 chr9 44859895 44860070 -97411374 + L1 LINE L1 4889 5057 -1089 1981 126 0 0 chr9 44860663 44860940 -97410504 + AluSc SINE Alu 1 277 -32 262 0 0 0 chr9 44861771 44861805 -97409639 - AluY SINE Alu -5 303 270 1385 224 55 28 chr9 44862840 44863253 -97408191 - MER67B LTR ERV1 -243 418 1 862 95 117 0 chr9 44863597 44863734 -97407710 - AluSg/x SINE Alu -28 284 132 47 19 0 0 chr9 44863935 44863989 -97407455 + AT_rich Low_complexity Low_complexity 1 54 0 824 188 19 54 chr9 44864400 44864660 -97406784 + MER67B LTR ERV1 1 117 -397 1664 118 0 0 chr9 44864671 44864900 -97406544 + AluSg SINE Alu 11 239 -71 1433 191 44 14 chr9 44864941 44865235 -97406209 + MER67D LTR ERV1 104 406 -108 1012 203 20 0 chr9 44865756 44865958 -97405486 - Tigger6 DNA MER2_type 0 1597 1392 2664 250 61 25 chr9 44866385 44867416 -97404028 + L1 LINE L1 2048 3056 -4509 2025 108 63 0 chr9 44867416 44867703 -97403741 + AluSc SINE Alu 1 305 -4 2664 250 61 25 chr9 44867703 44868670 -97402774 + L1 LINE L1 3056 3986 -3579 * 3535 191 32 10 chr9 44868665 44869392 -97402052 + L1 LINE L1 5968 6710 -855 2410 72 3 0 chr9 44869438 44869742 -97401702 - AluY SINE Alu -6 305 1 227 232 29 14 chr9 44869797 44869866 -97401578 - L1MCa LINE L1 -5042 1384 1315 209 333 0 0 chr9 44871591 44871648 -97399796 - MER5A DNA MER1_type -64 125 69 327 25 0 0 chr9 44871649 44871689 -97399755 + (CA)n Simple_repeat Simple_repeat 2 41 0 1002 265 94 33 chr9 44872295 44872799 -97398645 + L2 LINE L2 2606 3148 -165 433 226 115 51 chr9 44873240 44873475 -97397969 + L1MC5 LINE L1 7349 7598 -363 1768 96 4 63 chr9 44873481 44873752 -97397692 + AluSq SINE Alu 1 255 -58 339 25 0 0 chr9 44875315 44875355 -97396089 + (TG)n Simple_repeat Simple_repeat 2 41 0 4015 237 57 12 chr9 44877463 44878512 -97392932 + L1MC4a LINE L1 6712 7807 -1 600 356 8 8 chr9 44878770 44879006 -97392438 + MIR SINE MIR 27 262 0 260 0 0 54 chr9 44880540 44880577 -97390867 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 774 175 0 0 chr9 44880777 44880891 -97390553 + AluJb SINE Alu 2 115 -197 980 112 0 0 chr9 44880891 44881016 -97390428 + AluSg/x SINE Alu 168 292 -18 438 244 92 0 chr9 44881154 44881273 -97390171 + L2 LINE L2 3180 3309 -4 457 250 230 0 chr9 44881958 44882106 -97389338 - MIR SINE MIR -8 254 73 7585 32 7 0 chr9 44883477 44884380 -97387064 + L1P LINE L1 4328 5236 -910 387 264 28 50 chr9 44885010 44885192 -97386252 + L1MCa LINE L1 1464 1641 -4785 1789 188 3 0 chr9 44885294 44885586 -97385858 - AluJb SINE Alu -19 293 1 2451 225 31 34 chr9 44885587 44886028 -97385416 + L1MD3 LINE L1 7360 7800 -195 2007 150 0 0 chr9 44886028 44886322 -97385122 + AluSx SINE Alu 1 294 -18 2451 225 31 34 chr9 44886322 44886498 -97384946 + L1MD3 LINE L1 7800 7975 -20 1554 253 23 25 chr9 44886498 44886936 -97384508 + L1M3b LINE L1 1 437 -5844 6194 109 7 17 chr9 44887042 44887788 -97383656 + L1PA14 LINE L1 2565 3317 -2844 1991 159 7 0 chr9 44887788 44888096 -97383348 + AluSx SINE Alu 1 310 -2 6194 109 7 17 chr9 44888096 44889081 -97382363 + L1PA14 LINE L1 3317 4310 -1851 6194 110 8 18 chr9 44889081 44890845 -97380599 + L1PA14 LINE L1 4423 6161 0 6194 109 7 17 chr9 44890845 44890858 -97380586 + L1PA14 LINE L1 4310 6161 0 5017 138 27 32 chr9 44891175 44891513 -97379931 - L1PB3 LINE L1 -2 6152 5814 2033 125 0 0 chr9 44891513 44891809 -97379635 - AluSg1 SINE Alu -13 296 1 5017 138 27 32 chr9 44891809 44892390 -97379054 - L1PB3 LINE L1 -340 5814 5237 237 65 0 0 chr9 44893653 44893684 -97377760 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 646 108 0 0 chr9 44893689 44893782 -97377662 - AluSg/x SINE Alu 0 310 218 2258 63 33 10 chr9 44893795 44894097 -97377347 - AluY SINE Alu -2 309 1 345 314 44 61 chr9 44894912 44895208 -97376236 - MER31-int LTR ERV1 -3920 1016 726 2063 167 31 51 chr9 44896498 44896948 -97374496 + MER66B LTR ERV1 46 486 0 270 222 16 48 chr9 44897924 44897987 -97373457 + MIR SINE MIR 18 78 -130 462 295 112 31 chr9 44899036 44899484 -97371960 - L1ME3A LINE L1 -222 5948 5465 184 326 150 18 chr9 44899536 44899763 -97371681 - L2 LINE L2 -129 3184 2928 1016 212 9 19 chr9 44899807 44900019 -97371425 + Tigger6a DNA MER2_type 2 211 -872 1683 220 42 37 chr9 44900019 44900474 -97370970 - MLT1C LTR MaLR 0 467 11 * 2553 190 113 24 chr9 44900465 44901082 -97370362 + Tigger6a DNA MER2_type 216 887 -196 2128 129 0 0 chr9 44901082 44901377 -97370067 + AluY SINE Alu 1 295 -16 519 215 135 77 chr9 44901382 44901708 -97369736 + L1MC5 LINE L1 7603 7947 -14 1473 210 0 33 chr9 44901931 44902231 -97369213 + AluJo SINE Alu 11 300 -12 2317 78 17 0 chr9 44902429 44902725 -97368719 - AluY SINE Alu -10 301 1 22 70 0 0 chr9 44902785 44902828 -97368616 + AT_rich Low_complexity Low_complexity 1 43 0 1745 157 77 10 chr9 44903362 44903674 -97367770 + THE1C LTR MaLR 43 375 0 787 122 8 8 chr9 44903674 44903797 -97367647 + THE1C-int LTR MaLR 1 123 -1457 810 102 19 0 chr9 44903798 44903906 -97367538 + AluSq/x SINE Alu 2 111 -202 684 212 101 40 chr9 44904639 44904837 -97366607 + MIR SINE MIR 2 211 -51 237 281 162 36 chr9 44904929 44904940 -97366504 - L2 LINE L2 -5 3308 3300 229 245 19 0 chr9 44904940 44904993 -97366451 - MIR SINE MIR -10 252 199 237 281 162 36 chr9 44904993 44905096 -97366348 - L2 LINE L2 -13 3300 3121 238 265 88 0 chr9 44905430 44905498 -97365946 - MLT1H LTR MaLR -172 423 350 2049 119 3 14 chr9 44905620 44905913 -97365531 + AluSc SINE Alu 1 290 -19 304 226 42 0 chr9 44905926 44906026 -97365418 - MLT1H LTR MaLR -378 171 39 239 290 45 22 chr9 44906120 44906344 -97365100 - L1M4 LINE L1 -1444 4702 4474 1951 179 19 0 chr9 44906493 44906857 -97364587 + Tigger1 DNA MER2_type 171 541 -1877 508 213 0 0 chr9 44906857 44906951 -97364493 - FLAM_A SINE Alu -48 94 1 656 268 11 17 chr9 44907036 44907215 -97364229 + MER90 LTR ERV1 51 228 -386 719 251 172 0 chr9 44907238 44907453 -97363991 + MER90 LTR ERV1 362 613 -1 2687 160 126 3 chr9 44908576 44909165 -97362279 - MER52C LTR ERV1 -617 661 1 1227 247 61 25 chr9 44909168 44909572 -97361872 + L1ME1 LINE L1 3254 3679 -2467 2304 97 0 3 chr9 44909572 44909870 -97361574 - AluSg SINE Alu -13 297 1 1227 247 61 25 chr9 44909870 44909939 -97361505 + L1ME1 LINE L1 3679 3744 -2402 1994 255 13 21 chr9 44910018 44910643 -97360801 + L1ME1 LINE L1 5556 6334 0 333 0 0 0 chr9 44911099 44911136 -97360308 + (CA)n Simple_repeat Simple_repeat 2 38 0 1553 126 4 8 chr9 44911283 44911544 -97359900 + L1MA5 LINE L1 6035 6294 -6 660 195 0 8 chr9 44912844 44912972 -97358472 + FLAM_A SINE Alu 3 129 -4 288 0 0 0 chr9 44913265 44913297 -97358147 + (TG)n Simple_repeat Simple_repeat 1 32 0 29 0 0 0 chr9 44913608 44913637 -97357807 + AT_rich Low_complexity Low_complexity 1 29 0 1905 93 7 52 chr9 44914771 44915062 -97356382 - AluSg SINE Alu -31 279 2 888 207 31 0 chr9 44916339 44916532 -97354912 + MER2 DNA MER2_type 12 210 -135 303 222 32 0 chr9 44916562 44916625 -97354819 + MER2 DNA MER2_type 281 345 0 195 129 0 0 chr9 44916970 44917001 -97354443 + (TA)n Simple_repeat Simple_repeat 2 32 0 413 279 34 87 chr9 44918365 44918465 -97352979 + MIR3 SINE MIR 6 110 -98 1792 128 173 32 chr9 44918465 44918840 -97352604 + MSTA LTR MaLR 1 428 0 9059 143 18 34 chr9 44918842 44920445 -97350999 + MSTA-int LTR MaLR 3 1578 -2 1663 144 187 45 chr9 44920447 44920770 -97350674 + MSTA LTR MaLR 1 386 -42 2102 133 0 3 chr9 44920770 44921063 -97350381 + AluSc SINE Alu 3 294 -15 1663 144 187 45 chr9 44921063 44921114 -97350330 + MSTA LTR MaLR 386 428 0 413 279 34 87 chr9 44921114 44921215 -97350229 + MIR3 SINE MIR 112 202 -6 880 205 28 28 chr9 44921343 44921665 -97349779 - L1ME3 LINE L1 -92 6070 5719 366 271 145 36 chr9 44921667 44921888 -97349556 - L1MEc LINE L1 -4277 2119 1875 192 238 0 0 chr9 44922738 44922801 -97348643 + (TA)n Simple_repeat Simple_repeat 2 64 0 27 49 0 0 chr9 44923044 44923085 -97348359 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr9 44923204 44923234 -97348210 + AT_rich Low_complexity Low_complexity 1 30 0 180 111 0 0 chr9 44923260 44923287 -97348157 + (CA)n Simple_repeat Simple_repeat 2 28 0 4017 70 4 25 chr9 44923834 44924274 -97347170 + L1PA8 LINE L1 5627 6054 -118 2312 88 0 0 chr9 44924274 44924570 -97346874 + AluY SINE Alu 1 296 -15 4017 70 4 25 chr9 44924570 44924687 -97346757 + L1PA8 LINE L1 6054 6172 0 2154 34 64 0 chr9 44924691 44924983 -97346461 + AluY SINE Alu 1 309 0 3078 181 25 48 chr9 44925033 44925784 -97345660 - L1 LINE L1 -864 6701 5968 1484 262 56 37 chr9 44925779 44926749 -97344695 - L1MEd LINE L1 -3579 3986 2914 * 2282 109 0 10 chr9 44926749 44927061 -97344383 - AluSc SINE Alu 0 309 1 1484 262 56 37 chr9 44927061 44927217 -97344227 - L1MEd LINE L1 -4651 2914 2762 549 287 91 11 chr9 44927597 44927959 -97343485 - L1M4 LINE L1 -2042 4104 3714 235 310 51 6 chr9 44928061 44928219 -97343225 - L1M4 LINE L1 -2607 3539 3375 688 241 93 102 chr9 44928243 44928579 -97342865 - L1ME3A LINE L1 -11 6159 5821 4436 159 65 2 chr9 44928579 44929415 -97342029 - L1MC1 LINE L1 -11 6322 5435 688 241 93 102 chr9 44929415 44930105 -97341339 - L1ME3A LINE L1 -349 5821 5108 1718 174 9 121 chr9 44930377 44930933 -97340511 - LTR12 LTR ERV1 -218 496 3 576 313 117 62 chr9 44930944 44931414 -97340030 - L1MEd LINE L1 -5560 1995 1500 24 32 0 0 chr9 44932703 44932734 -97338710 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr9 44932831 44932857 -97338587 + AT_rich Low_complexity Low_complexity 1 26 0 2204 77 3 11 chr9 44933331 44933616 -97337828 - AluY SINE Alu 0 311 29 21 0 0 0 chr9 44933725 44933746 -97337698 + AT_rich Low_complexity Low_complexity 1 21 0 2572 97 5 21 chr9 44933746 44934128 -97337316 - L1PA13 LINE L1 -11 6152 5777 463 180 56 0 chr9 44934290 44934379 -97337065 - AluJb SINE Alu -184 128 35 22 35 0 0 chr9 44935054 44935083 -97336361 + AT_rich Low_complexity Low_complexity 1 29 0 2880 72 5 11 chr9 44935085 44935461 -97335983 + THE1C LTR MaLR 1 374 -1 30 69 0 0 chr9 44935701 44935759 -97335685 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr9 44936357 44936379 -97335065 + AT_rich Low_complexity Low_complexity 1 22 0 3557 175 45 13 chr9 44936596 44937349 -97334095 + L1MC2 LINE L1 5559 6335 -9 237 317 50 33 chr9 44938677 44938797 -97332647 + L3b LINE CR1 1286 1407 -176 2185 99 0 0 chr9 44939021 44939303 -97332141 - AluSc SINE Alu -27 282 1 235 185 12 136 chr9 44940345 44940426 -97331018 + L2 LINE L2 3202 3272 0 505 324 34 10 chr9 44940511 44940715 -97330729 - MIR SINE MIR -1 261 53 205 283 17 0 chr9 44941366 44941426 -97330018 + L3b LINE CR1 1347 1407 -176 293 237 11 32 chr9 44941881 44941974 -97329470 - L1MDb LINE L1 -3569 2837 2747 * 1216 253 43 60 chr9 44941971 44942353 -97329091 - L1MDb LINE L1 -4929 1477 1127 2131 109 3 3 chr9 44942353 44942646 -97328798 + AluSc SINE Alu 1 293 -16 1216 253 43 60 chr9 44942646 44943000 -97328444 - L1MDb LINE L1 -5279 1127 769 451 280 48 90 chr9 44943551 44943883 -97327561 + Charlie8 DNA MER1_type 203 520 -1897 232 324 39 39 chr9 44944460 44944642 -97326802 - L1ME LINE L1 -573 5548 5367 2294 101 3 0 chr9 44944646 44944952 -97326492 - AluSg SINE Alu -3 307 1 254 296 15 68 chr9 44946268 44946400 -97325044 - L2 LINE L2 -7 3306 3182 680 201 57 100 chr9 44947122 44947351 -97324093 - MER20 DNA MER1_type 0 219 1 1532 136 217 9 chr9 44947549 44947872 -97323572 - MSTA LTR MaLR -38 390 1 9266 141 17 35 chr9 44947874 44949479 -97321965 - MSTA-int LTR MaLR -2 1578 3 1770 133 173 32 chr9 44949481 44949856 -97321588 - MSTA LTR MaLR 0 428 1 195 129 0 0 chr9 44951324 44951355 -97320089 + (TA)n Simple_repeat Simple_repeat 2 32 0 328 206 32 0 chr9 44951697 44951760 -97319684 - MER2 DNA MER2_type 0 345 281 909 186 42 10 chr9 44951790 44951983 -97319461 - MER2 DNA MER2_type -135 210 12 24 0 0 0 chr9 44953019 44953043 -97318401 + AT_rich Low_complexity Low_complexity 1 24 0 1862 96 7 51 chr9 44953261 44953553 -97317891 + AluSg SINE Alu 2 280 -30 29 0 0 0 chr9 44954687 44954716 -97316728 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr9 44955026 44955064 -97316380 + (CA)n Simple_repeat Simple_repeat 2 39 0 680 198 0 8 chr9 44955358 44955484 -97315960 - FLAM_A SINE Alu -6 127 3 1631 135 4 8 chr9 44956783 44957043 -97314401 - L1MA5 LINE L1 -6 6294 6036 306 0 0 0 chr9 44957188 44957222 -97314222 + (TG)n Simple_repeat Simple_repeat 2 35 0 521 269 7 13 chr9 44957675 44957691 -97313753 - L1MA10 LINE L1 0 6334 6319 2343 246 13 21 chr9 44957691 44958300 -97313144 - L1ME1 LINE L1 -7 6395 5792 1465 243 126 22 chr9 44958303 44958448 -97312996 - L1ME1 LINE L1 -2281 4101 3973 2231 104 0 3 chr9 44958448 44958745 -97312699 + AluSg SINE Alu 1 296 -14 1465 243 126 22 chr9 44958745 44959155 -97312289 - L1ME1 LINE L1 -2409 3973 3488 6119 141 156 18 chr9 44959158 44960281 -97311163 + MER52C LTR ERV1 1 1278 0 21 36 0 0 chr9 44960804 44960832 -97310612 + AT_rich Low_complexity Low_complexity 1 28 0 973 146 0 110 chr9 44961220 44961278 -97310166 + L1 LINE L1 4325 4388 -1758 1632 77 5 27 chr9 44961278 44961500 -97309944 + AluSq SINE Alu 1 217 -96 973 146 0 110 chr9 44961500 44961687 -97309757 + L1 LINE L1 4388 4543 -1603 5232 136 40 26 chr9 44961699 44962598 -97308846 - L1MA4 LINE L1 -1 6299 5388 14602 179 38 47 chr9 44962698 44966585 -97304859 - L1M1 LINE L1 -654 5882 2005 22 0 0 0 chr9 44966592 44966614 -97304830 + AT_rich Low_complexity Low_complexity 1 22 0 2403 259 41 54 chr9 44967372 44968804 -97302640 - L1ME1 LINE L1 -3189 3193 1661 2236 105 0 23 chr9 44968804 44969108 -97302336 + AluSx SINE Alu 2 298 -14 2403 259 41 54 chr9 44969108 44969161 -97302283 - L1ME1 LINE L1 -4721 1661 1609 298 247 85 62 chr9 44969197 44969421 -97302023 - L1ME4a LINE L1 -234 5887 5664 800 173 0 8 chr9 44969554 44969687 -97301757 - FLAM_C SINE Alu 0 133 2 232 244 207 18 chr9 44971223 44971361 -97300083 - MIR SINE MIR -64 144 18 507 260 36 104 chr9 44971929 44972294 -97299150 + L1ME LINE L1 5435 5779 -342 253 285 82 73 chr9 44972384 44972724 -97298720 + L2 LINE L2 2320 2662 -652 226 288 62 58 chr9 44972777 44973020 -97298424 + L2 LINE L2 2550 2793 -521 180 236 55 0 chr9 44973542 44973597 -97297847 - L2 LINE L2 -304 2968 2911 603 157 164 0 chr9 44973627 44973761 -97297683 + L1MC3 LINE L1 6941 7096 -689 227 330 0 10 chr9 44973764 44973861 -97297583 + MLT1F1 LTR MaLR 36 131 -436 279 167 37 0 chr9 44973861 44973915 -97297529 + L1MC3 LINE L1 7196 7251 -534 * 3224 231 73 43 chr9 44973912 44974136 -97297308 - L1MEc LINE L1 -2827 3905 3689 2040 118 4 4 chr9 44974136 44974416 -97297028 - AluSx SINE Alu -26 286 7 3224 231 73 43 chr9 44974416 44975236 -97296208 - L1MEc LINE L1 -3043 3689 2830 2097 110 16 32 chr9 44975236 44975546 -97295898 + AluSq SINE Alu 1 305 -8 3224 231 73 43 chr9 44975546 44976135 -97295309 - L1MEc LINE L1 -3902 2830 2260 4633 166 42 21 chr9 44976135 44976962 -97294482 - MER52A LTR ERV1 0 1755 911 2280 226 158 24 chr9 44976937 44977569 -97293875 - MER52A LTR ERV1 -978 777 61 * 277 266 16 0 chr9 44977880 44977944 -97293500 - MER52A LTR ERV1 -1690 65 1 501 225 3 1 chr9 44977944 44978061 -97293383 - L1M2 LINE L1 -4238 2495 2157 231 261 58 0 chr9 44978084 44978153 -97293291 - L1M2 LINE L1 -4795 1858 1786 264 340 176 0 chr9 44978362 44978493 -97292951 - L1MEd LINE L1 -5487 632 467 312 91 0 0 chr9 44978493 44978537 -97292907 + (TA)n Simple_repeat Simple_repeat 1 44 0 264 340 176 0 chr9 44978537 44978564 -97292880 - L1MEd LINE L1 -5652 467 446 382 304 81 69 chr9 44978627 44978962 -97292482 - L1MEd LINE L1 -5722 397 59 1789 160 163 39 chr9 44979162 44979543 -97291901 + MSTA LTR MaLR 1 428 0 6573 159 9 75 chr9 44979545 44979671 -97291773 + MSTA-int LTR MaLR 3 136 -1444 1952 167 0 13 chr9 44979671 44979982 -97291462 + AluSx SINE Alu 1 307 -5 6573 159 9 75 chr9 44979982 44981170 -97290274 + MSTA-int LTR MaLR 136 1231 -349 2523 251 45 38 chr9 44981200 44981938 -97289506 + MER21-int LTR ERV1 2428 3170 -1021 2595 156 35 9 chr9 44981953 44982383 -97289061 - MLT1C LTR MaLR 0 467 27 3608 145 33 35 chr9 44982415 44983078 -97288366 - L1MB3 LINE L1 -3 6180 5519 228 133 0 44 chr9 44983078 44983115 -97288329 - MSTD LTR MaLR -359 37 1 2042 169 77 14 chr9 44983117 44983189 -97288255 + L1MB7 LINE L1 5102 5168 -1010 2671 112 3 35 chr9 44983189 44983565 -97287879 + THE1B LTR MaLR 1 364 0 2042 169 77 14 chr9 44983565 44984096 -97287348 + L1MB7 LINE L1 5168 5739 -439 360 254 8 63 chr9 44984101 44984227 -97287217 + MER21-int LTR ERV1 4018 4136 -55 1399 163 10 58 chr9 44984573 44984867 -97286577 + L1MB7 LINE L1 5735 6014 -170 324 290 45 22 chr9 44984998 44985222 -97286222 + L1M4 LINE L1 4474 4702 -1444 369 214 42 0 chr9 44985316 44985418 -97286026 + MLT1H LTR MaLR 39 171 -378 2030 121 3 23 chr9 44985426 44985731 -97285713 - AluSc SINE Alu -10 299 1 216 0 0 0 chr9 44985734 44985758 -97285686 + (T)n Simple_repeat Simple_repeat 1 24 0 312 246 278 5 chr9 44985798 44985974 -97285470 + MLT1G1 LTR MaLR 155 453 -114 220 245 19 0 chr9 44986370 44986423 -97285021 + MIR SINE MIR 199 252 -10 692 198 107 43 chr9 44986537 44986724 -97284720 - MIR SINE MIR -62 200 2 182 264 38 0 chr9 44988212 44988265 -97283179 + MIR SINE MIR 111 165 -97 889 257 73 2 chr9 44988386 44988806 -97282638 - MER90 LTR ERV1 -1 574 56 572 191 0 0 chr9 44988892 44988986 -97282458 + FLAM_A SINE Alu 1 94 -48 3061 187 21 0 chr9 44988986 44989516 -97281928 - Tigger1 DNA MER2_type -1877 541 1 5421 224 90 35 chr9 44989639 44991314 -97280130 - L1 LINE L1 -2461 3889 2070 1835 187 58 0 chr9 44991314 44991640 -97279804 + MER7A DNA MER2_type 4 346 0 5421 224 90 35 chr9 44991640 44992031 -97279413 - L1 LINE L1 -4280 2070 1702 669 111 56 0 chr9 44992026 44992134 -97279310 + L1 LINE L1 4123 4236 -1910 * 25 31 0 0 chr9 44992983 44993015 -97278429 + AT_rich Low_complexity Low_complexity 1 32 0 202 378 199 0 chr9 44993405 44993561 -97277883 + MIR3 SINE MIR 16 202 -6 187 299 65 37 chr9 44993897 44994004 -97277440 - L2 LINE L2 -7 3306 3197 297 0 0 0 chr9 44996116 44996149 -97275295 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 527 220 55 0 chr9 44996938 44997047 -97274397 - MIR3 SINE MIR -12 196 82 974 248 22 0 chr9 44997612 44997834 -97273610 - MIR SINE MIR 0 262 36 538 127 13 0 chr9 44999182 44999261 -97272183 + MADE1 DNA Mariner 1 80 0 2083 131 7 3 chr9 44999676 44999974 -97271470 + AluSx SINE Alu 1 299 -13 925 183 17 29 chr9 44999974 45000149 -97271295 + AluSg/x SINE Alu 134 306 -6 2417 102 0 0 chr9 45000535 45000848 -97270596 + AluSq SINE Alu 1 313 0 1138 148 54 80 chr9 45002032 45002211 -97269233 + L1MC/D LINE L1 5224 5400 -879 2111 114 33 0 chr9 45002211 45002513 -97268931 + L1PA16 LINE L1 5842 6157 -9 1138 148 54 80 chr9 45002513 45002647 -97268797 + L1MC/D LINE L1 5400 5536 -743 1752 258 41 22 chr9 45002979 45003542 -97267902 - L1 LINE L1 -4753 597 1 2529 226 37 59 chr9 45003542 45003718 -97267726 - L1MD3 LINE L1 -20 7975 7797 2048 139 0 0 chr9 45003718 45004012 -97267432 - AluSx SINE Alu -18 294 1 2529 226 37 59 chr9 45004012 45004470 -97266974 - L1MD3 LINE L1 -198 7797 7357 1768 194 0 0 chr9 45004470 45004763 -97266681 + AluJb SINE Alu 1 293 -19 2529 226 37 59 chr9 45004763 45004857 -97266587 - L1MD3 LINE L1 -638 7357 7262 498 243 42 37 chr9 45004854 45005043 -97266401 - L1MCa LINE L1 -4773 1653 1464 * 422 99 6 88 chr9 45005481 45005652 -97265792 + (CCCTAA)n Simple_repeat Simple_repeat 5 161 0 3282 154 27 5 chr9 45005796 45006431 -97265013 - TAR1 Satellite telomeric -43 2068 1420 4167 264 98 37 chr9 45006974 45008706 -97262738 - L1M2c LINE L1 -4516 1765 1 2540 227 37 50 chr9 45008706 45008882 -97262562 - L1MD3 LINE L1 -20 7975 7798 1996 146 0 0 chr9 45008882 45009176 -97262268 - AluSx SINE Alu -18 294 1 2540 227 37 50 chr9 45009176 45009627 -97261817 - L1MD3 LINE L1 -197 7798 7356 1760 192 3 0 chr9 45009627 45009919 -97261525 + AluJb SINE Alu 1 293 -19 2540 227 37 50 chr9 45009919 45010013 -97261431 - L1MD3 LINE L1 -639 7356 7262 508 238 42 37 chr9 45010010 45010199 -97261245 - L1MCa LINE L1 -4773 1653 1464 * 2091 85 3 28 chr9 45010849 45011132 -97260312 - AluY SINE Alu -7 304 29 21 0 0 0 chr9 45011241 45011262 -97260182 + AT_rich Low_complexity Low_complexity 1 21 0 2645 110 5 21 chr9 45011262 45011644 -97259800 - L1PA13 LINE L1 -11 6152 5777 500 180 56 0 chr9 45011806 45011895 -97259549 - FLAM_C SINE Alu -15 128 35 22 35 0 0 chr9 45012566 45012595 -97258849 + AT_rich Low_complexity Low_complexity 1 29 0 2906 81 24 8 chr9 45012597 45012966 -97258478 + THE1C LTR MaLR 1 375 0 230 208 60 13 chr9 45012988 45013078 -97258366 - L1MDa LINE L1 -4785 1641 1479 40 49 0 0 chr9 45013205 45013266 -97258178 + AT_rich Low_complexity Low_complexity 1 61 0 1167 256 122 57 chr9 45013672 45014463 -97256981 - L1M4c LINE L1 -2743 3639 2901 663 163 7 59 chr9 45014463 45014598 -97256846 - FLAM_C SINE Alu -5 128 1 1167 256 122 57 chr9 45014598 45015574 -97255870 - L1M4c LINE L1 -3481 2901 1686 10522 44 0 2 chr9 45015584 45017576 -97253868 + L1PA4 LINE L1 4161 6154 -1 13229 208 95 17 chr9 45017576 45020617 -97250827 - L1M1 LINE L1 -4271 3294 17 658 125 0 19 chr9 45020628 45020732 -97250712 - L1PA16 LINE L1 -21 6145 6044 3754 169 31 13 chr9 45020737 45021418 -97250026 - L1PA16 LINE L1 -84 6082 5390 371 106 0 45 chr9 45021422 45021481 -97249963 + L1P LINE L1 5304 5361 -800 2537 62 0 0 chr9 45021481 45021785 -97249659 + AluY SINE Alu 1 304 -7 604 293 100 11 chr9 45022543 45022891 -97248553 + MLT1H1 LTR MaLR 32 422 -120 21 89 0 0 chr9 45022933 45022989 -97248455 + AT_rich Low_complexity Low_complexity 1 56 0 180 336 161 15 chr9 45023795 45023932 -97247512 + L2 LINE L2 3115 3271 -1 201 268 183 0 chr9 45024016 45024087 -97247357 - L2 LINE L2 0 3313 3230 2195 191 104 38 chr9 45024800 45025329 -97246115 - LTR6A LTR ERV1 0 564 1 301 231 51 0 chr9 45025544 45025622 -97245822 - L2 LINE L2 0 3272 3191 2611 212 19 0 chr9 45025897 45026412 -97245032 + L1PB4 LINE L1 5620 6144 -12 269 236 0 22 chr9 45027547 45027636 -97243808 - L2 LINE L2 -1231 2083 1997 345 226 0 12 chr9 45027693 45027777 -97243667 - MER103 DNA DNA -72 94 12 237 83 0 0 chr9 45027783 45027819 -97243625 + (TG)n Simple_repeat Simple_repeat 2 37 0 10865 199 28 6 chr9 45028734 45031020 -97240424 + L1P LINE L1 3016 5350 -796 8799 155 30 80 chr9 45030993 45032864 -97238580 + L1M1 LINE L1 1477 3254 -4311 * 748 91 25 25 chr9 45033243 45033364 -97238080 + 5S rRNA rRNA 1 121 0 389 212 8 0 chr9 45034255 45034373 -97237071 + CT-rich Low_complexity Low_complexity 1 119 0 1948 189 83 30 chr9 45034377 45034836 -97236608 - LTR2B LTR ERV1 0 490 8 221 155 17 0 chr9 45034844 45034902 -97236542 + (TG)n Simple_repeat Simple_repeat 2 60 0 286 249 0 24 chr9 45036014 45036179 -97235265 + CT-rich Low_complexity Low_complexity 1 161 0 282 270 17 0 chr9 45036187 45036302 -97235142 + (TG)n Simple_repeat Simple_repeat 2 118 0 23 0 0 0 chr9 45037174 45037197 -97234247 + AT_rich Low_complexity Low_complexity 1 23 0 3679 181 56 15 chr9 45037410 45038156 -97233288 + L1MC2 LINE L1 5559 6335 -9 225 365 17 0 chr9 45039486 45039601 -97231843 + L3b LINE CR1 1291 1407 -176 2166 103 0 0 chr9 45039824 45040106 -97231338 - AluSc SINE Alu -27 282 1 232 185 12 136 chr9 45041149 45041230 -97230214 + L2 LINE L2 3202 3272 0 505 299 44 20 chr9 45041315 45041519 -97229925 - MIR SINE MIR -1 261 53 335 213 21 32 chr9 45042684 45042778 -97228666 - L1MDb LINE L1 -3569 2837 2745 * 1426 251 44 60 chr9 45042773 45043154 -97228290 - L1MDb LINE L1 -4929 1477 1122 2153 109 3 3 chr9 45043154 45043447 -97227997 + AluSc SINE Alu 1 293 -16 1426 251 44 60 chr9 45043447 45043776 -97227668 - L1MDb LINE L1 -5284 1122 789 542 280 49 92 chr9 45044352 45044677 -97226767 + Charlie8 DNA MER1_type 203 513 -1904 235 332 94 44 chr9 45045190 45045444 -97226000 - L1ME LINE L1 -492 5629 5356 2258 110 0 3 chr9 45045444 45045753 -97225691 - AluSg SINE Alu -2 308 1 235 332 94 44 chr9 45045753 45045796 -97225648 - L1ME LINE L1 -765 5356 5317 229 284 23 45 chr9 45047111 45047199 -97224245 - L2 LINE L2 -46 3267 3182 917 188 52 96 chr9 45047921 45048150 -97223294 - MER20 DNA MER1_type 0 219 1 183 241 148 0 chr9 45048914 45048968 -97222476 + L2 LINE L2 3211 3272 0 524 186 9 0 chr9 45049138 45049251 -97222193 + (TA)n Simple_repeat Simple_repeat 1 114 0 1518 167 43 40 chr9 45049266 45049589 -97221855 - LTR8 LTR ERV1 -3 688 365 610 178 17 98 chr9 45049590 45049826 -97221618 + MER52A LTR ERV1 1 217 -1538 1948 122 4 0 chr9 45050142 45050468 -97220976 + AluSx SINE Alu 3 329 0 1920 152 13 0 chr9 45051220 45051523 -97219921 + LTR8A LTR ERV1 1 307 -420 545 78 0 0 chr9 45051642 45051706 -97219738 - AluSp/q SINE Alu -93 220 157 534 63 0 0 chr9 45051714 45051777 -97219667 + AluSg/x SINE Alu 65 127 -183 194 0 39 0 chr9 45051788 45051814 -97219630 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 3046 51 0 0 chr9 45054188 45054542 -97216902 + L1PA5 LINE L1 5794 6147 -7 578 325 4 40 chr9 45057080 45057308 -97214136 + L2 LINE L2 3094 3313 0 324 214 0 24 chr9 45057471 45057597 -97213847 + (TA)n Simple_repeat Simple_repeat 1 123 0 564 255 78 86 chr9 45057987 45058383 -97213061 + L1MD2 LINE L1 5957 6349 -10 274 284 46 46 chr9 45058419 45058528 -97212916 + MIR SINE MIR 81 189 -73 267 133 0 0 chr9 45058551 45058596 -97212848 + (TA)n Simple_repeat Simple_repeat 1 45 0 348 321 43 31 chr9 45059677 45059839 -97211605 - MIR SINE MIR -18 244 81 745 264 42 62 chr9 45059886 45060292 -97211152 - L1MD2 LINE L1 -19 6340 5943 27 29 0 0 chr9 45060337 45060371 -97211073 + AT_rich Low_complexity Low_complexity 1 34 0 1335 152 38 4 chr9 45060598 45060862 -97210582 + L1MB1 LINE L1 5903 6175 -14 2227 98 0 0 chr9 45061479 45061776 -97209668 + AluY SINE Alu 1 297 -14 193 246 180 74 chr9 45061961 45062083 -97209361 - MIR SINE MIR -80 182 48 705 186 51 0 chr9 45062558 45062714 -97208730 + L1PA16 LINE L1 5959 6122 -44 289 244 47 0 chr9 45062910 45062996 -97208448 - L1MD2 LINE L1 -2015 5793 5704 431 328 8 0 chr9 45063838 45063972 -97207472 + MIR SINE MIR 26 160 -102 1059 90 0 0 chr9 45063976 45064109 -97207335 + AluY SINE Alu 2 134 -177 2360 75 0 0 chr9 45064109 45064403 -97207041 + AluY SINE Alu 1 294 -17 383 274 48 8 chr9 45064467 45064591 -97206853 + MIR3 SINE MIR 75 203 -5 677 196 84 126 chr9 45064879 45065364 -97206080 - MER4C LTR ERV1 0 465 1 1383 193 46 49 chr9 45065776 45066081 -97205363 + AluJo SINE Alu 1 304 -8 570 286 83 16 chr9 45066161 45066413 -97205031 + L2 LINE L2 3041 3309 -4 537 319 93 40 chr9 45067403 45067801 -97203643 + MER20B DNA MER1_type 92 510 -273 2078 71 0 0 chr9 45068223 45068531 -97202913 + L1PA6 LINE L1 5878 6185 0 337 222 56 0 chr9 45068556 45068664 -97202780 + MER20B DNA MER1_type 522 635 -148 852 160 36 27 chr9 45069592 45069817 -97201627 + Charlie5 DNA MER1_type 2303 2529 -83 22 56 0 0 chr9 45069830 45069866 -97201578 + AT_rich Low_complexity Low_complexity 1 36 0 9242 219 13 21 chr9 45070961 45073909 -97197535 + L1 LINE L1 1497 4410 -1736 6696 247 56 21 chr9 45074365 45077374 -97194070 - L1M3 LINE L1 -570 6312 3194 512 165 139 51 chr9 45077375 45077533 -97193911 - L1MA9 LINE L1 -3 6309 6138 344 257 153 124 chr9 45077533 45078240 -97193204 - L1M3 LINE L1 -5473 1376 650 3343 198 41 38 chr9 45078331 45079778 -97191666 + L1PA16 LINE L1 4545 5996 -170 1941 124 3 0 chr9 45079778 45080087 -97191357 + AluSx SINE Alu 1 310 0 3343 198 41 38 chr9 45080087 45080169 -97191275 + L1PA16 LINE L1 5996 6076 -90 30 59 0 0 chr9 45080874 45080925 -97190519 + AT_rich Low_complexity Low_complexity 1 51 0 495 408 81 60 chr9 45081334 45081641 -97189803 - L1M4 LINE L1 -1053 5093 4767 1292 221 16 35 chr9 45081641 45081958 -97189486 - AluJb SINE Alu -1 311 1 495 408 81 60 chr9 45081958 45082231 -97189213 - L1M4 LINE L1 -1379 4767 4501 1033 266 75 53 chr9 45082232 45082714 -97188730 - L1M4 LINE L1 -1613 4533 4030 1819 174 0 0 chr9 45082714 45083012 -97188432 - AluSx SINE Alu 0 312 15 1033 266 75 53 chr9 45083012 45083207 -97188237 - L1M4 LINE L1 -2116 4030 3841 8710 113 11 9 chr9 45083218 45089238 -97182206 + L1PA6 LINE L1 11 6154 0 798 275 6 38 chr9 45089246 45089592 -97181852 - L1M4 LINE L1 -2298 3848 3514 2304 83 0 3 chr9 45189654 45189943 -97081501 + AluSx SINE Alu 1 288 -24 1540 211 112 36 chr9 45189969 45190467 -97080977 - L1ME2 LINE L1 -58 6106 5571 577 225 136 9 chr9 45190464 45190681 -97080763 - L1MEc LINE L1 -841 2461 2175 * 254 226 75 32 chr9 45190698 45190791 -97080653 - L1MEc LINE L1 -5451 972 876 926 70 0 0 chr9 45190800 45190915 -97080529 - AluY SINE Alu -13 298 184 234 312 52 0 chr9 45191616 45191693 -97079751 + L2 LINE L2 3231 3311 -2 2175 104 38 41 chr9 45193041 45193406 -97078038 + THE1B LTR MaLR 1 364 0 382 128 186 23 chr9 45193406 45193492 -97077952 + THE1B-int LTR MaLR 1 100 -1480 1368 109 0 5 chr9 45194909 45195093 -97076351 - AluSq SINE Alu -103 210 28 318 177 0 32 chr9 45195093 45195155 -97076289 - AluJo SINE Alu -159 143 84 430 211 13 0 chr9 45195170 45195246 -97076198 + MER2 DNA MER2_type 268 344 -1 1496 153 136 0 chr9 45195649 45195957 -97075487 - L1MB3 LINE L1 -2 6181 5832 285 173 49 12 chr9 45195965 45196046 -97075398 + MER20B DNA MER1_type 602 685 -98 242 157 39 0 chr9 45196083 45196134 -97075310 + MER20B DNA MER1_type 674 726 -57 251 272 12 37 chr9 45196716 45196797 -97074647 + MLT1F LTR MaLR 51 129 -413 310 324 55 36 chr9 45196797 45197072 -97074372 - L1MB3 LINE L1 -390 5731 5452 259 100 0 0 chr9 45197136 45197176 -97074268 - L1MB3 LINE L1 -1009 5350 5311 435 32 0 16 chr9 45197675 45197738 -97073706 - Harlequin LTR ERV1 -5263 1633 1572 * 4972 54 10 3 chr9 45197731 45198359 -97073085 - Harlequin LTR ERV1 -6003 893 262 2691 98 5 0 chr9 45198354 45198732 -97072712 - Harlequin LTR ERV1 -6516 380 1 * 400 62 0 0 chr9 45198732 45198780 -97072664 - LTR2B LTR ERV1 0 490 443 10708 72 0 6 chr9 45198880 45200276 -97071168 + L1P LINE L1 19 1406 -4740 774 214 41 38 chr9 45200784 45201051 -97070393 + L1MC4 LINE L1 7775 8042 0 209 257 20 20 chr9 45201238 45201339 -97070105 + (TA)n Simple_repeat Simple_repeat 1 101 0 929 133 0 0 chr9 45201703 45201838 -97069606 + L1P3 LINE L1 10 144 -6317 1076 208 10 0 chr9 45202740 45202947 -97068497 + MER2 DNA MER2_type 1 209 -136 651 317 45 8 chr9 45203413 45203656 -97067788 - MIR SINE MIR -3 259 8 1654 142 0 4 chr9 45204216 45204477 -97066967 - L1PA15 LINE L1 -4 6161 5902 315 191 0 0 chr9 45204650 45204713 -97066731 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 189 0 0 0 chr9 45204813 45204834 -97066610 + (TA)n Simple_repeat Simple_repeat 2 22 0 1970 201 41 35 chr9 45205472 45205934 -97065510 + MLT1C LTR MaLR 3 467 0 279 0 0 0 chr9 45206321 45206352 -97065092 + (TG)n Simple_repeat Simple_repeat 1 31 0 1231 210 159 42 chr9 45207543 45207952 -97063492 - MSTB2 LTR MaLR 0 457 1 387 319 32 51 chr9 45210826 45210983 -97060461 - L2 LINE L2 -192 3080 2927 251 277 69 0 chr9 45211194 45211295 -97060149 + MER103 DNA DNA 59 166 0 716 214 57 113 chr9 45211501 45211908 -97059536 + MLT1B LTR MaLR 7 390 0 442 285 90 77 chr9 45212041 45212514 -97058930 + MLT1G1 LTR MaLR 82 594 -1 225 0 0 0 chr9 45213255 45213280 -97058164 + (CA)n Simple_repeat Simple_repeat 1 25 0 189 270 0 0 chr9 45213708 45213797 -97057647 + CT-rich Low_complexity Low_complexity 3 91 0 200 280 0 0 chr9 45213891 45213941 -97057503 + CT-rich Low_complexity Low_complexity 3 52 0 3320 241 146 32 chr9 45215482 45216799 -97054645 + L1MDa LINE L1 580 2022 -4518 400 219 123 13 chr9 45217005 45217160 -97054284 + L1MDa LINE L1 2120 2291 -4249 * 564 237 163 6 chr9 45217149 45217381 -97054063 + L1MD2 LINE L1 6061 7773 -12 347 0 23 0 chr9 45219088 45219131 -97052313 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2466 62 0 0 chr9 45219727 45220031 -97051413 + AluY SINE Alu 1 304 -7 24 0 0 0 chr9 45220264 45220288 -97051156 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 45220568 45220597 -97050847 + AT_rich Low_complexity Low_complexity 1 29 0 739 296 84 12 chr9 45220631 45220952 -97050492 - MER115 DNA AcHobo 0 693 350 449 351 44 18 chr9 45223418 45223646 -97047798 - MIR SINE MIR -26 236 3 262 225 18 27 chr9 45224335 45224446 -97046998 + (TTTA)n Simple_repeat Simple_repeat 3 112 0 5147 85 11 14 chr9 45224446 45225021 -97046423 - L1PA7 LINE L1 -148 6006 5431 2781 39 6 0 chr9 45225021 45225358 -97046086 - L1PA4 LINE L1 -2 6153 5815 5147 85 11 14 chr9 45225358 45226048 -97045396 - L1PA7 LINE L1 -723 5431 4743 * 8684 108 10 2 chr9 45226044 45226163 -97045281 + L1P LINE L1 2323 2440 -3706 324 0 0 0 chr9 45226163 45226199 -97045245 + (TA)n Simple_repeat Simple_repeat 1 36 0 8684 108 10 2 chr9 45226199 45227398 -97044046 + L1P LINE L1 2440 3651 -2495 2208 118 0 3 chr9 45227724 45228029 -97043415 - AluSg SINE Alu -6 304 1 255 312 128 0 chr9 45228177 45228286 -97043158 - L1ME LINE L1 -525 5639 5517 22 35 0 0 chr9 45228289 45228318 -97043126 + AT_rich Low_complexity Low_complexity 1 29 0 735 194 18 48 chr9 45228517 45228682 -97042762 - AluJo SINE Alu -144 168 9 340 298 29 0 chr9 45229181 45229285 -97042159 + L2 LINE L2 3191 3297 -16 236 282 0 68 chr9 45229888 45229991 -97041453 + MIR SINE MIR 112 207 -55 23 0 0 0 chr9 45230274 45230297 -97041147 + AT_rich Low_complexity Low_complexity 1 23 0 225 286 223 0 chr9 45232653 45232765 -97038679 - L2 LINE L2 0 3313 3177 306 243 14 0 chr9 45232942 45233012 -97038432 - MER69 DNA AcHobo -1 2525 2455 1512 204 7 4 chr9 45233743 45234022 -97037422 + AluJo SINE Alu 1 280 -32 211 27 27 27 chr9 45234022 45234059 -97037385 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 237 277 12 24 chr9 45234254 45234337 -97037107 - L1ME3A LINE L1 -48 6122 6041 189 0 0 0 chr9 45234413 45234434 -97037010 + (T)n Simple_repeat Simple_repeat 1 21 0 5122 33 2 0 chr9 45234463 45235070 -97036374 - L1PA3 LINE L1 -1 6154 5547 2243 103 0 3 chr9 45235159 45235450 -97035994 - AluSq SINE Alu -23 290 1 585 237 103 47 chr9 45235450 45235682 -97035762 - L1MC4 LINE L1 -5 8037 7793 446 310 148 20 chr9 45236829 45237323 -97034121 - L1MC4a LINE L1 -1895 5913 5357 1879 91 18 100 chr9 45237332 45237671 -97033773 - AluYb8 SINE Alu 0 318 8 268 132 0 0 chr9 45237843 45237881 -97033563 - U2 snRNA snRNA -149 39 2 270 311 66 22 chr9 45238573 45238756 -97032688 - MLT1L LTR MaLR -55 560 370 225 190 25 76 chr9 45239103 45239182 -97032262 - MLT1L LTR MaLR -532 83 9 1722 195 39 23 chr9 45239991 45240375 -97031069 + MLT1B LTR MaLR 1 390 0 24 32 0 0 chr9 45241258 45241289 -97030155 + AT_rich Low_complexity Low_complexity 1 31 0 203 343 60 30 chr9 45241291 45241492 -97029952 - L3b LINE CR1 -140 1443 1237 2022 137 76 15 chr9 45241785 45242128 -97029316 - THE1B LTR MaLR 0 364 1 7971 148 27 33 chr9 45242133 45243298 -97028146 - THE1B-int LTR MaLR -6 1574 408 1087 114 19 13 chr9 45243298 45243456 -97027988 - AluSg/x SINE Alu -20 292 134 7971 148 27 33 chr9 45243456 45243860 -97027584 - THE1B-int LTR MaLR -1172 408 3 2063 126 89 15 chr9 45243862 45244188 -97027256 - THE1B LTR MaLR 0 364 15 216 86 0 0 chr9 45244677 45244712 -97026732 + (T)n Simple_repeat Simple_repeat 1 35 0 238 336 29 39 chr9 45245054 45245158 -97026286 + MIR3 SINE MIR 67 169 -39 28 48 0 0 chr9 45248364 45248406 -97023038 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr9 45249433 45249456 -97021988 + AT_rich Low_complexity Low_complexity 1 23 0 256 356 26 9 chr9 45249894 45250009 -97021435 - L2 LINE L2 -936 2378 2262 664 243 28 23 chr9 45250136 45250313 -97021131 - MER5B DNA MER1_type 0 178 1 476 261 39 78 chr9 45250331 45250450 -97020994 + MER5B DNA MER1_type 3 114 -64 1993 123 0 32 chr9 45250450 45250759 -97020685 - AluSx SINE Alu -13 299 1 476 261 39 78 chr9 45250759 45250819 -97020625 + MER5B DNA MER1_type 114 175 -3 2433 41 0 53 chr9 45250920 45251240 -97020204 - AluY SINE Alu -8 303 1 184 273 0 0 chr9 45251686 45251730 -97019714 + MER5B DNA MER1_type 1 44 -134 2339 43 3 3 chr9 45251730 45252012 -97019432 + AluY SINE Alu 1 282 -29 474 192 10 19 chr9 45252155 45252259 -97019185 + MSTA LTR MaLR 1 103 -325 691 258 158 39 chr9 45252356 45252635 -97018809 - THE1-int LTR MaLR -362 1218 907 1048 194 94 21 chr9 45252639 45252927 -97018517 + MSTA LTR MaLR 66 374 -54 409 187 36 13 chr9 45252945 45253058 -97018386 - MST-int LTR MaLR -963 661 506 5790 223 54 27 chr9 45253161 45254689 -97016755 + MSTA-int LTR MaLR 15 1583 -68 371 180 0 0 chr9 45254761 45254822 -97016622 - MSTA LTR MaLR -51 377 317 292 179 39 39 chr9 45254824 45254902 -97016542 + MSTA-int LTR MaLR 1574 1651 0 254 281 42 0 chr9 45254902 45254998 -97016446 + MSTA LTR MaLR 1 100 -328 341 222 148 9 chr9 45255043 45255151 -97016293 + MSTA LTR MaLR 58 180 -248 1319 211 15 53 chr9 45255151 45255492 -97015952 + MSTA-int LTR MaLR 1324 1651 0 557 156 10 0 chr9 45255492 45255588 -97015856 + MSTA LTR MaLR 1 97 -331 268 196 18 0 chr9 45255684 45255740 -97015704 + THE1-int LTR MaLR 911 967 -613 * 717 202 222 28 chr9 45255728 45255976 -97015468 - THE1-int LTR MaLR -389 1191 896 982 258 52 11 chr9 45255988 45256256 -97015188 + MSTA LTR MaLR 96 374 -54 339 225 196 7 chr9 45256285 45256423 -97015021 - MST-int LTR MaLR -981 670 507 296 197 15 0 chr9 45256429 45256495 -97014949 + MSTA-int LTR MaLR 36 102 -1549 749 243 62 45 chr9 45256617 45256909 -97014535 + MSTA LTR MaLR 76 372 -56 546 199 153 10 chr9 45256929 45257083 -97014361 - MST-int LTR MaLR -963 661 463 * 5923 236 49 20 chr9 45257078 45258656 -97012788 + MSTA-int LTR MaLR 28 1651 0 425 237 21 0 chr9 45258656 45258753 -97012691 + MSTA LTR MaLR 1 99 -329 315 267 109 0 chr9 45258802 45258903 -97012541 + MSTA LTR MaLR 60 171 -257 1283 213 30 42 chr9 45258908 45259241 -97012203 + MST-int LTR MaLR 1323 1651 0 294 184 87 78 chr9 45259241 45259344 -97012100 + MSTA LTR MaLR 1 104 -324 581 247 167 56 chr9 45259422 45259709 -97011735 - MST-int LTR MaLR -361 1290 972 604 250 49 11 chr9 45259710 45259894 -97011550 + MSTA LTR MaLR 76 266 -162 341 301 37 7 chr9 45259898 45260034 -97011410 - THE1-int LTR MaLR -975 605 466 * 4745 238 61 24 chr9 45260031 45261607 -97009837 + MST-int LTR MaLR 27 1651 0 412 189 28 38 chr9 45261607 45261713 -97009731 + MSTA LTR MaLR 1 105 -323 308 261 54 22 chr9 45261803 45261895 -97009549 + MSTA LTR MaLR 65 159 -269 1357 217 18 39 chr9 45261905 45262241 -97009203 + MSTA-int LTR MaLR 1321 1649 -2 454 192 10 19 chr9 45262243 45262347 -97009097 + MSTA LTR MaLR 1 103 -325 261 196 18 0 chr9 45262435 45262491 -97008953 + THE1-int LTR MaLR 911 967 -613 * 672 245 191 21 chr9 45262482 45262723 -97008721 - THE1-int LTR MaLR -392 1188 907 1042 193 93 21 chr9 45262727 45263017 -97008427 + MSTA LTR MaLR 66 376 -52 337 223 39 16 chr9 45263033 45263146 -97008298 - MST-int LTR MaLR -963 661 506 6119 214 50 29 chr9 45263271 45264862 -97006582 + MSTA-int LTR MaLR 28 1651 0 425 237 21 0 chr9 45264862 45264959 -97006485 + MSTA LTR MaLR 1 99 -329 287 280 120 0 chr9 45265008 45265108 -97006336 + MSTA LTR MaLR 60 171 -257 1222 222 30 42 chr9 45265113 45265446 -97005998 + MSTA-int LTR MaLR 1323 1651 0 287 184 87 78 chr9 45265446 45265549 -97005895 + MSTA LTR MaLR 1 104 -324 2109 130 0 0 chr9 45266172 45266472 -97004972 - AluSx SINE Alu -9 303 4 24 0 0 0 chr9 45266544 45266568 -97004876 + AT_rich Low_complexity Low_complexity 1 24 0 212 318 75 75 chr9 45266923 45267175 -97004269 - L2 LINE L2 -934 2380 2129 23 0 0 0 chr9 45267390 45267413 -97004031 + AT_rich Low_complexity Low_complexity 1 23 0 237 242 0 32 chr9 45267755 45267817 -97003627 + CT-rich Low_complexity Low_complexity 2 61 0 300 386 66 15 chr9 45269921 45270180 -97001264 + L2 LINE L2 2574 2845 -469 1405 137 4 31 chr9 45270191 45270447 -97000997 - L1PA13 LINE L1 -2 6161 5913 266 242 16 0 chr9 45270944 45270956 -97000488 + MER3 DNA MER1_type 37 49 -160 353 141 0 77 chr9 45270956 45271034 -97000410 - MER3 DNA MER1_type -1 208 137 2086 95 7 16 chr9 45271284 45271588 -96999856 - AluSc SINE Alu -8 301 1 21 0 0 0 chr9 45274304 45274325 -96997119 + AT_rich Low_complexity Low_complexity 1 21 0 236 298 12 48 chr9 45274958 45275042 -96996402 - L3 LINE CR1 -254 1323 1243 429 280 0 0 chr9 45275155 45275255 -96996189 - MER20 DNA MER1_type -1 218 119 28 48 0 0 chr9 45277753 45277795 -96993649 + AT_rich Low_complexity Low_complexity 1 42 0 1421 144 9 9 chr9 45278049 45278278 -96993166 - MER30 DNA MER1_type -1 229 1 486 250 103 7 chr9 45278482 45278618 -96992826 - MER45C DNA AcHobo -94 859 711 991 254 70 0 chr9 45278686 45278899 -96992545 - MER45C DNA AcHobo -721 232 5 884 338 11 3 chr9 45279258 45279542 -96991902 + MLT2E LTR ERVL 93 378 -250 522 255 12 19 chr9 45279573 45279734 -96991710 + MLT2E LTR ERVL 469 628 0 1354 269 11 4 chr9 45280623 45281087 -96990357 - L1M4 LINE L1 -2536 3610 3144 33 0 0 0 chr9 45281161 45281194 -96990250 + AT_rich Low_complexity Low_complexity 1 33 0 2395 263 65 93 chr9 45281640 45282939 -96988505 + L1MCc LINE L1 11 1273 -5150 24 85 0 0 chr9 45283595 45283654 -96987790 + AT_rich Low_complexity Low_complexity 1 59 0 2278 97 13 0 chr9 45284695 45285004 -96986440 + AluSq SINE Alu 1 313 0 234 285 167 11 chr9 45285012 45285198 -96986246 + L1MCc LINE L1 2056 2270 -4852 367 345 32 18 chr9 45285205 45285425 -96986019 + L1MCc LINE L1 2321 2543 -4579 22 0 0 0 chr9 45285455 45285477 -96985967 + AT_rich Low_complexity Low_complexity 1 22 0 1067 293 101 61 chr9 45285831 45286478 -96984966 + L1MCc LINE L1 3041 3661 -3280 2448 48 3 6 chr9 45286478 45286789 -96984655 + AluY SINE Alu 1 310 -1 1067 293 101 61 chr9 45286789 45286841 -96984603 + L1MCc LINE L1 3661 3709 -3232 1071 147 25 0 chr9 45286841 45287039 -96984405 + L1PB3 LINE L1 5942 6144 -10 1067 293 101 61 chr9 45287039 45288489 -96982955 + L1MCc LINE L1 3709 5277 -1664 6077 144 6 24 chr9 45289018 45290161 -96981283 - L1PB1 LINE L1 -6 6145 4983 210 71 0 0 chr9 45290161 45290189 -96981255 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 6077 144 6 24 chr9 45290189 45290205 -96981239 - L1PB1 LINE L1 -1168 4983 4968 1753 139 15 7 chr9 45290205 45290479 -96980965 - AluSx SINE Alu -36 276 1 6077 144 6 24 chr9 45290479 45290680 -96980764 - L1PB1 LINE L1 -1183 4968 4815 423 273 8 30 chr9 45290823 45290955 -96980489 + L1M4 LINE L1 2673 2801 -3345 1647 62 0 0 chr9 45291404 45291598 -96979846 - AluY SINE Alu -116 195 2 656 95 0 0 chr9 45291599 45291694 -96979750 + AluY SINE Alu 215 309 -2 1967 119 3 17 chr9 45293011 45293306 -96978138 + AluSg SINE Alu 1 291 -19 1206 287 21 9 chr9 45294189 45294523 -96976921 - MLT1E2 LTR MaLR -66 560 223 5209 139 1 15 chr9 45294549 45296162 -96975282 - L1PA15 LINE L1 0 6165 4550 9393 221 11 39 chr9 45296163 45297400 -96974044 - L1PA15 LINE L1 -2171 3975 2844 3095 52 0 0 chr9 45297400 45297785 -96973659 - L1PA3 LINE L1 0 6155 5771 9393 221 11 39 chr9 45297785 45299065 -96972379 - L1PA15 LINE L1 -3302 2844 1529 5548 215 27 31 chr9 45299070 45300189 -96971255 + L1PA12 LINE L1 1543 2657 -4924 1937 146 50 14 chr9 45300189 45300551 -96970893 - THE1C LTR MaLR 0 375 1 5548 215 27 31 chr9 45300551 45300768 -96970676 + L1PA12 LINE L1 2657 2873 -4708 424 191 101 96 chr9 45300768 45300946 -96970498 - MLT1E1 LTR MaLR -397 257 1 5964 174 58 2 chr9 45302137 45303279 -96968165 - Tigger3b DNA MER2_type -25 1206 1 1074 194 132 32 chr9 45304346 45304673 -96966771 + MLT1A1 LTR MaLR 5 365 0 25 51 0 0 chr9 45304924 45304963 -96966481 + AT_rich Low_complexity Low_complexity 1 39 0 1780 156 46 48 chr9 45305099 45305471 -96965973 + THE1C LTR MaLR 4 374 -1 217 208 52 0 chr9 45305649 45305726 -96965718 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 2264 36 0 7 chr9 45307557 45307833 -96963611 - AluY SINE Alu -12 299 26 822 239 66 30 chr9 45307912 45308217 -96963227 - L1MCa LINE L1 -3950 2476 2161 1473 225 48 22 chr9 45308252 45308608 -96962836 + MLT1A1 LTR MaLR 1 365 0 1388 196 33 60 chr9 45308680 45308979 -96962465 - L1MCa LINE L1 -4421 2005 1700 1810 110 8 12 chr9 45308979 45309234 -96962210 + AluY SINE Alu 3 256 -55 1388 196 33 60 chr9 45309234 45309612 -96961832 - L1MCa LINE L1 -4726 1700 1259 233 104 62 0 chr9 45309638 45309686 -96961758 + A-rich Low_complexity Low_complexity 3 53 0 366 156 0 0 chr9 45309929 45309993 -96961451 + (TA)n Simple_repeat Simple_repeat 1 64 0 2551 166 22 41 chr9 45310309 45310861 -96960583 + L1MC2 LINE L1 5647 6186 -158 22 35 0 0 chr9 45310869 45310898 -96960546 + AT_rich Low_complexity Low_complexity 1 29 0 1240 258 127 19 chr9 45311494 45311913 -96959531 + MLT1C LTR MaLR 4 467 0 266 335 68 12 chr9 45311950 45312111 -96959333 + L2 LINE L2 3104 3273 -40 361 339 8 0 chr9 45312622 45312743 -96958701 - LTR33 LTR ERVL -323 198 77 2465 196 43 33 chr9 45313303 45313886 -96957558 + Tigger3b DNA MER2_type 1 589 -642 260 178 14 0 chr9 45314390 45314463 -96956981 + (TG)n Simple_repeat Simple_repeat 2 75 0 522 263 100 0 chr9 45315526 45315686 -96955758 - MER67D LTR ERV1 -114 400 225 32 0 0 0 chr9 45315697 45315729 -96955715 + AT_rich Low_complexity Low_complexity 1 32 0 2022 130 3 3 chr9 45315961 45316268 -96955176 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr9 45316530 45316551 -96954893 + AT_rich Low_complexity Low_complexity 1 21 0 2354 167 20 18 chr9 45317189 45317631 -96953813 - L1MA5 LINE L1 -236 6064 5622 192 176 0 78 chr9 45318032 45318083 -96953361 + L2 LINE L2 3226 3272 0 289 237 154 0 chr9 45318631 45318729 -96952715 + HsTC2 DNA Tc2 1786 1897 -1 22 70 0 0 chr9 45318988 45319031 -96952413 + AT_rich Low_complexity Low_complexity 1 43 0 341 316 40 40 chr9 45320015 45320192 -96951252 + MIR3 SINE MIR 16 192 -16 235 64 21 21 chr9 45321560 45321607 -96949837 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 602 243 14 0 chr9 45322951 45323099 -96948345 + MIR SINE MIR 113 262 0 497 302 138 9 chr9 45323205 45323430 -96948014 + MIR SINE MIR 1 254 -8 23 78 0 0 chr9 45325357 45325408 -96946036 + AT_rich Low_complexity Low_complexity 1 51 0 2003 109 7 0 chr9 45327530 45327804 -96943640 - AluSx SINE Alu -20 292 17 2470 77 0 13 chr9 45327940 45328253 -96943191 - AluSg1 SINE Alu 0 309 1 288 175 0 0 chr9 45328374 45328437 -96943007 + (TG)n Simple_repeat Simple_repeat 1 63 0 1952 131 6 6 chr9 45330274 45330586 -96940858 - AluSx SINE Alu 0 312 1 37 0 0 0 chr9 45330812 45330849 -96940595 + AT_rich Low_complexity Low_complexity 1 37 0 522 263 100 0 chr9 45330860 45331020 -96940424 + MER67D LTR ERV1 225 400 -114 281 164 14 0 chr9 45332088 45332161 -96939283 + (CA)n Simple_repeat Simple_repeat 2 75 0 220 339 85 36 chr9 45333782 45334145 -96937299 + L2 LINE L2 2460 2840 -474 2353 93 0 29 chr9 45334272 45334584 -96936860 - AluY SINE Alu -8 303 1 24 77 0 0 chr9 45334692 45334744 -96936700 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr9 45335311 45335334 -96936110 + AT_rich Low_complexity Low_complexity 1 23 0 252 172 69 0 chr9 45335358 45335416 -96936028 - MER4-int LTR ERV1 -5433 1165 1104 6183 122 21 27 chr9 45335997 45336970 -96934474 - LTR5 LTR ERVK -2 967 1 338 283 66 30 chr9 45337560 45337726 -96933718 + L1MCc LINE L1 17 188 -6235 1298 209 7 54 chr9 45337928 45338224 -96933220 - AluJo SINE Alu -30 282 1 251 267 122 11 chr9 45338266 45338356 -96933088 - Charlie7 DNA MER1_type -2511 101 2 1342 174 69 43 chr9 45338965 45339267 -96932177 - MSTB LTR MaLR 0 426 117 958 144 195 15 chr9 45339267 45339364 -96932080 - MER30 DNA MER1_type 0 230 152 270 56 0 0 chr9 45339364 45339400 -96932044 + (TG)n Simple_repeat Simple_repeat 1 36 0 219 103 0 0 chr9 45339401 45339440 -96932004 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 958 144 195 15 chr9 45339440 45339535 -96931909 - MER30 DNA MER1_type -77 153 1 846 130 16 0 chr9 45339535 45339657 -96931787 - MSTB LTR MaLR -302 124 1 322 298 79 53 chr9 45339682 45339947 -96931497 - L1ME LINE L1 -547 5623 5352 26 64 0 0 chr9 45340080 45340127 -96931317 + AT_rich Low_complexity Low_complexity 1 47 0 1396 285 40 7 chr9 45340301 45340705 -96930739 + MER70A LTR ERVL 4 420 -52 3271 128 20 0 chr9 45341466 45341973 -96929471 + L1PB2 LINE L1 5631 6147 -4 21 57 0 0 chr9 45343655 45343690 -96927754 + AT_rich Low_complexity Low_complexity 1 35 0 1691 158 3 40 chr9 45343690 45343993 -96927451 - AluJo SINE Alu -20 292 1 189 0 0 0 chr9 45344634 45344655 -96926789 + (TG)n Simple_repeat Simple_repeat 2 22 0 211 308 0 44 chr9 45344847 45344938 -96926506 - MIR SINE MIR -20 242 156 471 123 0 0 chr9 45344939 45345020 -96926424 + (CA)n Simple_repeat Simple_repeat 2 82 0 404 159 307 0 chr9 45345096 45345184 -96926260 + FLAM_C SINE Alu 12 126 -17 805 281 105 23 chr9 45345427 45345826 -96925618 - MLT1K LTR MaLR -2 586 155 378 312 23 7 chr9 45346264 45346399 -96925045 + MIR3 SINE MIR 20 157 -51 1462 202 179 3 chr9 45346400 45346791 -96924653 - LTR46 LTR ERV1 0 460 1 274 330 28 0 chr9 45346833 45346939 -96924505 - L2 LINE L2 -24 3289 3181 2312 94 0 0 chr9 45347237 45347534 -96923910 - AluY SINE Alu -14 297 1 427 324 132 0 chr9 45347624 45347843 -96923601 + MIR SINE MIR 15 262 0 329 324 0 0 chr9 45347994 45348105 -96923339 + MIR SINE MIR 30 140 -122 1075 229 20 112 chr9 45348156 45348549 -96922895 - LTR16C LTR ERVL 0 491 135 221 57 29 0 chr9 45348641 45348676 -96922768 + (CA)n Simple_repeat Simple_repeat 2 37 0 199 276 40 13 chr9 45348952 45349028 -96922416 - MIR SINE MIR -60 148 71 640 128 2 2 chr9 45353283 45353961 -96917483 + HSAT5 Satellite Satellite 1 678 -1 228 202 36 36 chr9 45353992 45354076 -96917368 + HSAT5 Satellite Satellite 1 84 -2 344 202 0 67 chr9 45354136 45354225 -96917219 + HSAT5 Satellite Satellite 1 83 -3 341 145 29 14 chr9 45354499 45354568 -96916876 + HSAT5 Satellite Satellite 9 78 -8 * 552 250 28 7 chr9 45354566 45354710 -96916734 - MSTA LTR MaLR -154 274 128 707 227 182 21 chr9 45354738 45354980 -96916464 + MST-int LTR MaLR 976 1256 -395 280 196 18 0 chr9 45354968 45355024 -96916420 - THE1-int LTR MaLR -613 967 911 * 343 216 78 39 chr9 45355109 45355211 -96916233 - MSTA LTR MaLR -322 106 1 1114 237 60 16 chr9 45355211 45355527 -96915917 - MSTA-int LTR MaLR -1 1650 1321 315 247 155 0 chr9 45355529 45355626 -96915818 - MSTA LTR MaLR -257 171 60 416 224 20 10 chr9 45355675 45355773 -96915671 - MSTA LTR MaLR -329 99 1 6040 224 61 34 chr9 45355773 45357354 -96914090 - MSTA-int LTR MaLR 0 1651 28 444 257 29 7 chr9 45357352 45357492 -96913952 + THE1-int LTR MaLR 466 608 -972 * 1019 211 109 8 chr9 45357528 45357794 -96913650 - MSTA LTR MaLR -60 368 76 823 184 197 29 chr9 45357798 45358042 -96913402 + THE1-int LTR MaLR 907 1191 -389 486 189 21 0 chr9 45358169 45358264 -96913180 - MSTA LTR MaLR -331 97 1 1391 205 6 40 chr9 45358264 45358610 -96912834 - MSTA-int LTR MaLR 0 1651 1318 293 266 43 32 chr9 45358617 45358711 -96912733 - MSTA LTR MaLR -269 159 65 436 175 25 0 chr9 45358761 45358841 -96912603 - MSTA LTR MaLR -331 97 16 5865 227 57 27 chr9 45358856 45360427 -96911017 - MSTA-int LTR MaLR 0 1651 34 455 273 26 26 chr9 45360429 45360583 -96910861 + THE1-int LTR MaLR 464 617 -963 1020 232 74 11 chr9 45360599 45360884 -96910560 - MSTA LTR MaLR -52 376 74 859 183 203 21 chr9 45360886 45361127 -96910317 + THE1-int LTR MaLR 907 1191 -389 232 211 18 18 chr9 45361115 45361172 -96910272 - THE1-int LTR MaLR -613 967 911 * 215 241 11 46 chr9 45361179 45361266 -96910178 + (CACCC)n Simple_repeat Simple_repeat 4 87 0 457 189 21 0 chr9 45361268 45361363 -96910081 - MSTA LTR MaLR -331 97 1 1359 188 40 46 chr9 45361363 45361692 -96909752 - MSTA-int LTR MaLR 0 1651 1325 423 189 104 9 chr9 45361693 45361799 -96909645 - MSTA LTR MaLR -253 175 60 446 204 20 10 chr9 45361848 45361946 -96909498 - MSTA LTR MaLR -329 99 1 627 155 17 9 chr9 45361946 45362062 -96909382 - MSTA-int LTR MaLR 0 1651 1535 * 4218 244 57 27 chr9 45362058 45363374 -96908070 - MSTA-int LTR MaLR -262 1389 34 416 241 156 0 chr9 45363379 45363520 -96907924 + MST-int LTR MaLR 508 670 -981 749 269 58 8 chr9 45363549 45363806 -96907638 - MSTA LTR MaLR -56 372 103 521 242 208 21 chr9 45363832 45364072 -96907372 + THE1-int LTR MaLR 907 1191 -389 230 185 19 19 chr9 45364060 45364114 -96907330 - THE1-int LTR MaLR -613 967 914 * 294 206 32 0 chr9 45364233 45364296 -96907148 - MSTA LTR MaLR -363 65 1 1134 222 30 42 chr9 45364296 45364629 -96906815 - MSTA-int LTR MaLR 0 1651 1323 280 267 109 0 chr9 45364634 45364735 -96906709 - MSTA LTR MaLR -257 171 60 415 227 21 0 chr9 45364785 45364882 -96906562 - MSTA LTR MaLR -329 99 1 5561 215 52 29 chr9 45364882 45366483 -96904961 - MSTA-int LTR MaLR 0 1651 15 400 173 38 3 chr9 45366586 45366687 -96904757 + MST-int LTR MaLR 506 661 -972 940 197 90 21 chr9 45366717 45367006 -96904438 - MSTA LTR MaLR -54 374 66 651 236 191 21 chr9 45367010 45367251 -96904193 + THE1-int LTR MaLR 907 1188 -392 242 214 18 0 chr9 45367242 45367298 -96904146 - THE1-int LTR MaLR -613 967 911 * 452 198 10 0 chr9 45367394 45367490 -96903954 - MSTA LTR MaLR -331 97 1 1301 211 6 46 chr9 45367492 45367838 -96903606 - MSTA-int LTR MaLR -2 1649 1318 323 206 59 0 chr9 45367842 45367910 -96903534 - MSTA LTR MaLR -262 166 95 417 212 10 0 chr9 45368013 45368112 -96903332 - MSTA LTR MaLR -328 100 1 2150 209 9 39 chr9 45368113 45368674 -96902770 - MSTA-int LTR MaLR -1 1650 1107 2103 249 53 5 chr9 45368680 45369319 -96902125 - MSTA-int LTR MaLR -955 696 27 412 211 173 8 chr9 45369316 45369449 -96901995 + MST-int LTR MaLR 507 661 -990 * 1083 225 60 7 chr9 45369485 45369769 -96901675 - MSTA LTR MaLR -54 374 76 714 212 203 21 chr9 45369773 45370014 -96901430 + THE1-int LTR MaLR 907 1191 -389 237 214 18 0 chr9 45370002 45370058 -96901386 - THE1-int LTR MaLR -613 967 911 * 407 236 0 0 chr9 45370177 45370283 -96901161 - MSTA-int LTR MaLR -1518 133 28 389 218 153 0 chr9 45370280 45370431 -96901013 + MST-int LTR MaLR 490 621 -959 * 1352 230 32 27 chr9 45370446 45370820 -96900624 - MSTA LTR MaLR -52 376 1 1083 178 37 12 chr9 45370820 45371062 -96900382 - MSTA-int LTR MaLR 0 1651 1404 1239 164 17 0 chr9 45371065 45371296 -96900148 - MSTA-int LTR MaLR -1404 247 13 1311 235 66 11 chr9 45371325 45371674 -96899770 - MSTA LTR MaLR -60 368 1 1714 119 89 48 chr9 45373629 45374066 -96897378 + SN5 Other centromeric 1 455 0 213 196 0 0 chr9 45374308 45374354 -96897090 + (TG)n Simple_repeat Simple_repeat 2 47 0 251 205 13 26 chr9 45374860 45374938 -96896506 + HSAT5 Satellite Satellite 9 85 -1 261 226 38 25 chr9 45375185 45375280 -96896164 + HSAT5 Satellite Satellite 1 96 -1 703 243 22 0 chr9 45375866 45376047 -96895397 + L1MC4 LINE L1 6819 7003 -1039 782 194 48 7 chr9 45376090 45376304 -96895140 + L1MC4 LINE L1 7112 7362 -680 24 53 0 0 chr9 45376610 45376648 -96894796 + AT_rich Low_complexity Low_complexity 1 38 0 245 304 133 45 chr9 45377116 45377449 -96893995 - L2 LINE L2 -166 3106 2745 2244 122 0 0 chr9 45378263 45378558 -96892886 + AluSc SINE Alu 1 295 -14 4173 189 23 17 chr9 45378738 45379872 -96891572 - L1PA16 LINE L1 0 6166 5026 2031 147 17 0 chr9 45379908 45380207 -96891237 - AluSx SINE Alu -8 304 1 1824 134 27 27 chr9 45380385 45380684 -96890760 - AluSg1 SINE Alu -10 299 1 2033 141 0 7 chr9 45380712 45381003 -96890441 + AluSg SINE Alu 1 289 -21 369 230 10 0 chr9 45381958 45382058 -96889386 + L1MA9 LINE L1 6163 6263 -49 4491 42 0 4 chr9 45382356 45382909 -96888535 - L1PA4 LINE L1 -2 6153 5603 203 161 0 0 chr9 45383293 45383324 -96888120 + polypurine Low_complexity Low_complexity 2 32 0 1284 243 7 14 chr9 45385054 45385350 -96886094 + AluJo SINE Alu 3 296 -6 2811 209 29 11 chr9 45385463 45386577 -96884867 + L1MA5 LINE L1 4808 5941 -359 1154 229 31 8 chr9 45386585 45386843 -96884601 + AluJo SINE Alu 1 264 -48 1181 170 80 0 chr9 45386910 45387186 -96884258 + L1MA5 LINE L1 5997 6294 -6 593 328 77 13 chr9 45387222 45387591 -96883853 + MLT1G1 LTR MaLR 79 550 -45 670 215 40 11 chr9 45388929 45389106 -96882338 + L1MB8 LINE L1 4766 4947 -1199 2310 189 29 49 chr9 45389118 45389924 -96881520 + L1MB8 LINE L1 5041 5836 -342 1941 148 78 7 chr9 45389933 45390345 -96881099 + MER61C LTR ERV1 11 434 0 1089 201 84 28 chr9 45390345 45390668 -96880776 + L1MB8 LINE L1 5833 6173 -5 1176 220 91 25 chr9 45390898 45391262 -96880182 + MER4E LTR ERV1 1 388 -391 3194 126 22 0 chr9 45391358 45391850 -96879594 + L1PA10 LINE L1 5655 6157 -11 2044 148 20 0 chr9 45392232 45392536 -96878908 - AluSq SINE Alu -3 310 1 24 32 0 0 chr9 45393111 45393142 -96878302 + AT_rich Low_complexity Low_complexity 1 31 0 302 172 0 16 chr9 45393149 45393213 -96878231 - MER34C LTR ERV1 -100 485 423 1972 122 66 0 chr9 45393473 45393759 -96877685 + AluSg SINE Alu 1 305 -5 2254 114 3 3 chr9 45394948 45395256 -96876188 - AluSg SINE Alu -1 309 2 1952 154 7 0 chr9 45395605 45395897 -96875547 - AluSx SINE Alu -18 294 1 1457 160 0 48 chr9 45396316 45396584 -96874860 - AluJb SINE Alu -20 292 38 200 233 50 0 chr9 45396607 45396667 -96874777 + MIR SINE MIR 198 260 -2 1785 208 78 26 chr9 45397680 45398179 -96873265 + L1MB8 LINE L1 5653 6177 -1 417 302 54 13 chr9 45399247 45399396 -96872048 + L2 LINE L2 2722 2876 -438 1035 226 36 7 chr9 45400122 45400396 -96871048 - L1MB7 LINE L1 0 6184 5903 23 0 0 0 chr9 45402432 45402455 -96868989 + AT_rich Low_complexity Low_complexity 1 23 0 505 288 75 4 chr9 45403513 45403739 -96867705 - L1MB7 LINE L1 -479 5642 5401 2226 119 0 3 chr9 45403858 45404168 -96867276 + AluSq SINE Alu 1 309 -4 587 45 22 22 chr9 45406193 45406282 -96865162 - L1PA5 LINE L1 0 6154 6066 26 30 0 0 chr9 45408284 45408317 -96863127 + AT_rich Low_complexity Low_complexity 1 33 0 1515 231 30 0 chr9 45409018 45409316 -96862128 + AluJo SINE Alu 1 307 -5 206 225 0 0 chr9 45409537 45409577 -96861867 - L2 LINE L2 -12 3301 3262 1985 159 7 0 chr9 45409859 45410161 -96861283 - AluSx SINE Alu -8 304 1 2119 110 7 0 chr9 45410593 45410925 -96860519 - AluSp SINE Alu 0 334 1 1302 214 15 35 chr9 45412226 45412568 -96858876 + LTR22A LTR ERVK 124 458 0 725 31 20 0 chr9 45412568 45412666 -96858778 - L1P LINE L1 -766 5406 5307 3530 72 8 6 chr9 45412666 45413139 -96858305 + L1PA7 LINE L1 5680 6154 0 186 250 33 50 chr9 45413184 45413244 -96858200 - L2 LINE L2 -873 2441 2383 431 261 49 49 chr9 45413245 45413429 -96858015 - L2 LINE L2 -906 2408 2225 2471 68 0 3 chr9 45414662 45414969 -96856475 - AluY SINE Alu -5 306 1 29 47 0 0 chr9 45415040 45415083 -96856361 + AT_rich Low_complexity Low_complexity 1 43 0 334 293 75 75 chr9 45415933 45416145 -96855299 - L1M2 LINE L1 -5835 1014 803 958 196 158 23 chr9 45417096 45417356 -96854088 + MSTA LTR MaLR 1 295 -133 1347 221 74 34 chr9 45417676 45418029 -96853415 + MLT1A2 LTR MaLR 4 370 -4 300 260 55 0 chr9 45419874 45419947 -96851497 + L1ME4a LINE L1 5976 6052 -69 732 212 0 14 chr9 45420004 45420150 -96851294 - AluJb SINE Alu -6 306 163 357 216 108 7 chr9 45420150 45420289 -96851155 + L1M1 LINE L1 3305 3457 -4108 301 282 24 0 chr9 45420405 45420490 -96850954 - MER20 DNA MER1_type -132 87 1 288 257 71 44 chr9 45420976 45421089 -96850355 - MIR3 SINE MIR -26 182 67 351 0 0 0 chr9 45421520 45421559 -96849885 + (TG)n Simple_repeat Simple_repeat 2 40 0 419 284 43 0 chr9 45421892 45422001 -96849443 + MLT1J LTR MaLR 26 139 -372 1371 164 62 54 chr9 45422001 45422354 -96849090 + THE1C LTR MaLR 1 356 -19 331 207 24 24 chr9 45424395 45424477 -96846967 + THE1C LTR MaLR 1 82 -293 957 176 0 0 chr9 45424840 45424999 -96846445 - AluY SINE Alu -152 159 1 802 197 0 0 chr9 45425258 45425405 -96846039 - AluSg/x SINE Alu -5 307 161 738 311 36 26 chr9 45425410 45425825 -96845619 - L1ME2 LINE L1 -191 5973 5555 2206 83 0 30 chr9 45425826 45426128 -96845316 - AluY SINE Alu -18 293 1 263 208 0 0 chr9 45426474 45426522 -96844922 - MER58 DNA MER1_type -15 2405 2358 312 311 57 6 chr9 45426524 45426701 -96844743 + L1MEd LINE L1 965 1150 -4969 21 0 0 0 chr9 45428151 45428172 -96843272 + AT_rich Low_complexity Low_complexity 1 21 0 424 262 61 19 chr9 45428552 45428790 -96842654 - MER102b DNA MER1_type -1 340 78 3017 178 89 14 chr9 45429619 45430200 -96841244 + L1MA6 LINE L1 5183 5808 -492 601 13 26 0 chr9 45430200 45430278 -96841166 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 3017 178 89 14 chr9 45430278 45430415 -96841029 + L1MA6 LINE L1 5808 5933 -367 21 0 0 0 chr9 45430460 45430481 -96840963 + AT_rich Low_complexity Low_complexity 1 21 0 201 218 0 58 chr9 45432073 45432160 -96839284 + T-rich Low_complexity Low_complexity 4 85 0 3216 189 32 8 chr9 45432611 45433200 -96838244 + MER6A DNA MER2_type 2 604 -1 656 252 0 0 chr9 45433356 45433479 -96837965 - FLAM_A SINE Alu -9 124 2 210 118 0 0 chr9 45433652 45433686 -96837758 + (T)n Simple_repeat Simple_repeat 1 34 0 1199 192 39 9 chr9 45433691 45433920 -96837524 - AluJo SINE Alu -56 256 21 29 0 0 0 chr9 45434111 45434140 -96837304 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 45434295 45434319 -96837125 + AT_rich Low_complexity Low_complexity 1 24 0 1281 256 67 58 chr9 45435638 45436209 -96835235 - L1ME2 LINE L1 -134 6030 5455 1459 100 5 68 chr9 45436524 45436744 -96834700 + AluSp SINE Alu 1 206 -107 1063 244 99 27 chr9 45436923 45437448 -96833996 + L2 LINE L2 2541 3097 -216 1314 221 27 13 chr9 45437452 45437750 -96833694 - AluJo SINE Alu -10 302 1 1516 180 22 61 chr9 45437759 45438121 -96833323 - MLT1D LTR MaLR -8 497 150 581 206 14 35 chr9 45438123 45438264 -96833180 + FLAM_C SINE Alu 6 143 0 1464 205 10 16 chr9 45438266 45438569 -96832875 + AluJo SINE Alu 1 301 -11 236 225 22 112 chr9 45438569 45438658 -96832786 + MER21B LTR ERV1 16 96 -767 2280 251 57 57 chr9 45438665 45439086 -96832358 + MER21B LTR ERV1 19 439 -424 1404 176 0 100 chr9 45439086 45439416 -96832028 - AluJb SINE Alu -14 298 2 2280 251 57 57 chr9 45439416 45439494 -96831950 + MER21B LTR ERV1 439 516 -347 1773 175 0 10 chr9 45439494 45439786 -96831658 + AluJo SINE Alu 9 297 -15 2280 251 57 57 chr9 45439786 45440073 -96831371 + MER21B LTR ERV1 515 806 -57 948 251 55 12 chr9 45440266 45440521 -96830923 + MSTA LTR MaLR 109 374 -54 353 239 196 7 chr9 45440550 45440688 -96830756 - MST-int LTR MaLR -981 670 507 300 197 15 0 chr9 45440694 45440760 -96830684 + MSTA-int LTR MaLR 36 102 -1549 784 243 79 62 chr9 45440883 45441187 -96830257 + MSTA LTR MaLR 75 385 -43 561 199 153 10 chr9 45441195 45441349 -96830095 - MST-int LTR MaLR -963 661 463 * 6074 234 49 20 chr9 45441344 45442922 -96828522 + MSTA-int LTR MaLR 28 1651 0 453 227 21 0 chr9 45442922 45443019 -96828425 + MSTA LTR MaLR 1 99 -329 291 303 71 0 chr9 45443071 45443170 -96828274 + MSTA LTR MaLR 66 171 -257 1302 216 30 42 chr9 45443175 45443508 -96827936 + MSTA-int LTR MaLR 1323 1651 0 296 194 87 78 chr9 45443508 45443611 -96827833 + MSTA LTR MaLR 1 104 -324 249 185 19 19 chr9 45443690 45443744 -96827700 + THE1-int LTR MaLR 914 967 -613 * 587 248 198 21 chr9 45443732 45443974 -96827470 - THE1-int LTR MaLR -389 1191 907 865 251 79 14 chr9 45443978 45444257 -96827187 + MSTA LTR MaLR 76 372 -56 471 241 156 0 chr9 45444286 45444427 -96827017 - MST-int LTR MaLR -981 670 508 4707 250 57 27 chr9 45444430 45445748 -96825696 + MSTA-int LTR MaLR 32 1389 -262 630 155 17 9 chr9 45445744 45445860 -96825584 + MSTA-int LTR MaLR 1535 1651 0 * 449 204 20 10 chr9 45445860 45445958 -96825486 + MSTA LTR MaLR 1 99 -329 411 198 109 0 chr9 45446007 45446108 -96825336 + MSTA LTR MaLR 60 171 -257 1376 189 39 45 chr9 45446110 45446443 -96825001 + MST-int LTR MaLR 1321 1651 0 21 0 0 0 chr9 45446809 45446830 -96824614 + AT_rich Low_complexity Low_complexity 1 21 0 1802 177 0 0 chr9 45447083 45447383 -96824061 + AluSx SINE Alu 3 302 -10 230 217 0 0 chr9 45448383 45448429 -96823015 + (CA)n Simple_repeat Simple_repeat 1 46 0 291 169 181 12 chr9 45450505 45450588 -96820856 + MER5A DNA MER1_type 10 106 -83 2377 83 0 0 chr9 45451464 45451766 -96819678 - AluY SINE Alu -9 302 1 1300 229 0 27 chr9 45451962 45452259 -96819185 - AluJo SINE Alu -23 289 1 1640 188 0 7 chr9 45452293 45452575 -96818869 + AluJb SINE Alu 3 282 -30 6753 48 1 0 chr9 45452960 45453734 -96817710 + L1PA5 LINE L1 5376 6150 -4 22 35 0 0 chr9 45453982 45454011 -96817433 + AT_rich Low_complexity Low_complexity 1 29 0 1172 202 35 57 chr9 45454103 45454385 -96817059 + AluJb SINE Alu 13 288 -24 1896 131 32 3 chr9 45454645 45454814 -96816630 - AluSx SINE Alu -19 293 111 290 44 0 22 chr9 45454814 45454859 -96816585 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1896 131 32 3 chr9 45454859 45454972 -96816472 - AluSx SINE Alu -201 111 3 654 194 0 0 chr9 45455229 45455327 -96816117 - FLAM_A SINE Alu -43 99 2 194 313 104 26 chr9 45457654 45457769 -96813675 + MIR SINE MIR 19 142 -66 196 336 93 44 chr9 45458386 45458612 -96812832 + MIR SINE MIR 20 256 -6 682 219 0 24 chr9 45458768 45458891 -96812553 + FLAM_A SINE Alu 6 125 -17 180 97 0 0 chr9 45458924 45458955 -96812489 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 717 135 51 39 chr9 45459338 45459494 -96811950 - MER21A LTR ERV1 -29 902 745 811 141 44 7 chr9 45459498 45459633 -96811811 + Tigger7 DNA MER2_type 2348 2487 0 2647 155 0 39 chr9 45460650 45461108 -96810336 + L1MC1 LINE L1 5894 6333 0 2109 133 0 0 chr9 45461117 45461411 -96810033 + AluSx SINE Alu 1 294 -18 315 0 0 0 chr9 45461454 45461489 -96809955 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2049 149 7 3 chr9 45461489 45461798 -96809646 + AluSq SINE Alu 1 310 -3 33 0 0 0 chr9 45461917 45461950 -96809494 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr9 45462289 45462324 -96809120 + AT_rich Low_complexity Low_complexity 1 35 0 2790 190 48 9 chr9 45462357 45462898 -96808546 + MER68 LTR ERV1 1 562 0 1336 206 0 71 chr9 45463263 45463589 -96807855 + AluJb SINE Alu 1 303 -9 900 173 0 0 chr9 45463624 45463763 -96807681 + FAM SINE Alu 22 160 -25 237 291 0 0 chr9 45464065 45464120 -96807324 + (TG)n Simple_repeat Simple_repeat 2 56 0 1957 183 40 12 chr9 45464373 45464795 -96806649 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr9 45465065 45465087 -96806357 + AT_rich Low_complexity Low_complexity 1 22 0 210 294 101 18 chr9 45465618 45465727 -96805717 + MIR SINE MIR 86 203 -59 541 226 0 0 chr9 45466402 45466508 -96804936 - U6 snRNA snRNA -1 106 1 637 177 0 0 chr9 45467471 45467584 -96803860 + FLAM_C SINE Alu 31 143 0 204 125 0 0 chr9 45468419 45468451 -96802993 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2275 103 0 0 chr9 45468501 45468793 -96802651 + AluSc SINE Alu 2 293 -16 21 0 0 0 chr9 45470238 45470259 -96801185 + AT_rich Low_complexity Low_complexity 1 21 0 418 264 61 19 chr9 45470639 45470874 -96800570 - MER102b DNA MER1_type -1 340 81 356 200 322 11 chr9 45471805 45471895 -96799549 - FLAM_A SINE Alu -15 118 1 265 261 90 54 chr9 45471920 45472031 -96799413 + MER5A DNA MER1_type 75 189 0 21 36 0 0 chr9 45472763 45472791 -96798653 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 45472893 45472922 -96798522 + AT_rich Low_complexity Low_complexity 1 29 0 565 269 145 45 chr9 45473691 45473919 -96797525 + MIR SINE MIR 4 251 -11 1534 176 42 7 chr9 45473923 45474207 -96797237 - AluJo SINE Alu -18 294 1 518 238 13 40 chr9 45474308 45474459 -96796985 + MER104 DNA Tc2 34 180 0 184 291 18 0 chr9 45474915 45474970 -96796474 + L2 LINE L2 3216 3271 -1 276 148 57 23 chr9 45476014 45476102 -96795342 + (TA)n Simple_repeat Simple_repeat 1 91 0 815 74 0 0 chr9 45476114 45476222 -96795222 + AluSq/x SINE Alu 1 108 -205 2072 107 10 13 chr9 45476350 45476658 -96794786 - AluSg SINE Alu -3 307 1 1655 200 15 6 chr9 45476819 45477159 -96794285 + L1M3 LINE L1 5480 5822 -361 516 226 0 0 chr9 45477166 45477268 -96794176 + AluJ/FLAM SINE Alu 1 102 -210 2014 126 0 3 chr9 45477872 45478157 -96793287 + AluSc SINE Alu 16 299 -10 2133 94 3 7 chr9 45478361 45478660 -96792784 + AluSq SINE Alu 1 298 -15 1295 207 194 3 chr9 45479935 45480322 -96791122 - LOR1b LTR ERV1 0 461 1 1013 172 32 16 chr9 45480981 45481167 -96790277 + AluSx SINE Alu 1 189 -123 249 307 79 76 chr9 45481225 45481541 -96789903 + L3 LINE CR1 1142 1458 -119 331 322 153 17 chr9 45482402 45482579 -96788865 + L3 LINE CR1 1307 1507 -70 355 248 20 20 chr9 45484292 45484393 -96787051 + HsTC2 DNA Tc2 4 104 -1794 377 289 75 47 chr9 45484405 45484658 -96786786 - L1MEd LINE L1 -5493 626 367 386 191 0 48 chr9 45484707 45484791 -96786653 + HsTC2 DNA Tc2 1819 1898 0 1760 101 4 12 chr9 45485297 45485545 -96785899 - AluSg1 SINE Alu -20 289 44 446 301 8 0 chr9 45486020 45486143 -96785301 - MIR SINE MIR -60 202 79 1129 222 80 34 chr9 45487320 45487671 -96783773 + MLT1A2 LTR MaLR 4 370 -4 21 0 0 0 chr9 45488342 45488363 -96783081 + AT_rich Low_complexity Low_complexity 1 21 0 306 248 94 26 chr9 45489519 45489636 -96781808 + L1ME4a LINE L1 5976 6100 -21 879 144 0 14 chr9 45489649 45489795 -96781649 - AluJb SINE Alu -6 306 163 10337 203 72 45 chr9 45489795 45490643 -96780801 + L1M1 LINE L1 3305 4128 -3437 1699 60 94 0 chr9 45490643 45490878 -96780566 - AluY SINE Alu -16 295 39 10337 203 72 45 chr9 45490878 45493386 -96778058 + L1M1 LINE L1 4128 6735 -830 367 292 140 99 chr9 45494389 45494896 -96776548 + L1M2 LINE L1 395 922 -5927 361 241 123 52 chr9 45495375 45495587 -96775857 + L1M2 LINE L1 3048 3274 -3574 1557 201 160 9 chr9 45495648 45496053 -96775391 + MER31B LTR ERV1 1 543 0 9012 32 0 0 chr9 45496143 45497218 -96774226 + L1P LINE L1 4028 5102 -1044 240 184 0 0 chr9 45497508 45497557 -96773887 + (TA)n Simple_repeat Simple_repeat 2 50 0 325 322 0 0 chr9 45497557 45497647 -96773797 + L1MC4 LINE L1 6614 6703 -1339 * 353 234 0 43 chr9 45497567 45497661 -96773783 - L1MC4 LINE L1 -1339 6703 6614 411 211 0 0 chr9 45497661 45497751 -96773693 + (CATATA)n Simple_repeat Simple_repeat 6 95 0 2148 98 3 13 chr9 45497867 45498174 -96773270 + AluY SINE Alu 1 304 -7 29 0 0 0 chr9 45498513 45498542 -96772902 + AT_rich Low_complexity Low_complexity 1 29 0 207 290 0 0 chr9 45499062 45499131 -96772313 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 22 70 0 0 chr9 45499354 45499397 -96772047 + AT_rich Low_complexity Low_complexity 1 43 0 29 47 0 0 chr9 45499644 45499687 -96771757 + AT_rich Low_complexity Low_complexity 1 43 0 29 70 0 0 chr9 45500055 45500112 -96771332 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chr9 45501441 45501483 -96769961 + AT_rich Low_complexity Low_complexity 1 42 0 188 111 28 0 chr9 45502368 45502404 -96769040 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 248 325 191 6 chr9 45502542 45502699 -96768745 + MIR SINE MIR 64 249 -13 490 327 79 25 chr9 45503184 45503551 -96767893 + L1MEc LINE L1 1436 1822 -4574 1300 233 56 134 chr9 45503601 45504248 -96767196 - MER77 LTR ERV1 -6 599 4 183 333 51 0 chr9 45505775 45505853 -96765591 - MIR SINE MIR -105 157 76 1897 142 3 14 chr9 45506280 45506576 -96764868 - AluSq SINE Alu -20 293 1 525 37 12 24 chr9 45506768 45506850 -96764594 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 24 53 0 0 chr9 45507210 45507248 -96764196 + AT_rich Low_complexity Low_complexity 1 38 0 33 0 0 0 chr9 45507417 45507450 -96763994 + AT_rich Low_complexity Low_complexity 1 33 0 302 384 28 19 chr9 45507463 45507679 -96763765 + HAL1 LINE L1 1475 1692 -815 30 27 0 0 chr9 45508044 45508081 -96763363 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr9 45508158 45508181 -96763263 + AT_rich Low_complexity Low_complexity 1 23 0 7740 23 0 0 chr9 45508399 45509463 -96761981 + L1PA3 LINE L1 5092 6155 0 220 295 39 70 chr9 45509482 45509506 -96761938 - L2 LINE L2 -714 2600 2577 1162 259 19 35 chr9 45509506 45509877 -96761567 + MLT1A1 LTR MaLR 1 365 0 220 295 39 70 chr9 45509877 45509981 -96761463 - L2 LINE L2 -737 2577 2476 245 313 90 8 chr9 45510520 45510654 -96760790 + L1ME LINE L1 3 147 -5923 250 336 23 16 chr9 45510775 45510903 -96760541 + L1ME LINE L1 153 281 -5980 347 227 11 176 chr9 45511277 45511550 -96759894 + L1M4 LINE L1 3856 4083 -2063 497 198 10 0 chr9 45511560 45511656 -96759788 - MLT1D LTR MaLR -2 503 407 24 32 0 0 chr9 45512487 45512518 -96758926 + AT_rich Low_complexity Low_complexity 1 31 0 1856 256 72 53 chr9 45512658 45513567 -96757877 - L1ME1 LINE L1 -5 6161 5244 1820 230 48 41 chr9 45513568 45514028 -96757416 - MER77 LTR ERV1 0 605 143 436 281 92 20 chr9 45513996 45514149 -96757295 - MER77 LTR ERV1 -380 225 62 * 21 0 0 0 chr9 45514231 45514252 -96757192 + AT_rich Low_complexity Low_complexity 1 21 0 8394 82 8 4 chr9 45514252 45516301 -96755143 + L1PA7 LINE L1 4089 6152 -2 590 256 77 65 chr9 45516297 45516711 -96754733 - L1ME1 LINE L1 -973 5173 4755 * 234 62 0 0 chr9 45517343 45517375 -96754069 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 4164 90 25 10 chr9 45517375 45517978 -96753466 - L1PA8 LINE L1 -28 6144 5533 22 0 0 0 chr9 45518547 45518569 -96752875 + AT_rich Low_complexity Low_complexity 1 22 0 3004 178 73 17 chr9 45518612 45518751 -96752693 - L1MA6 LINE L1 -365 5935 5805 457 16 32 0 chr9 45518751 45518813 -96752631 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 3004 178 73 17 chr9 45518813 45519394 -96752050 - L1MA6 LINE L1 -495 5805 5183 21 0 0 0 chr9 45519998 45520019 -96751425 + AT_rich Low_complexity Low_complexity 1 21 0 326 314 0 0 chr9 45520023 45520125 -96751319 + MER103 DNA DNA 26 127 -39 240 308 108 23 chr9 45520497 45520711 -96750733 - L1MEd LINE L1 -4862 1257 1026 379 296 32 0 chr9 45521014 45521139 -96750305 - MIR SINE MIR -67 195 67 422 236 82 127 chr9 45521745 45522122 -96749322 - MER57B LTR ERV1 -2 401 42 302 311 57 6 chr9 45522563 45522740 -96748704 - L1MEd LINE L1 -4969 1150 965 261 208 0 0 chr9 45522742 45522790 -96748654 + MER58 DNA MER1_type 2358 2405 -15 266 254 9 53 chr9 45522867 45522981 -96748463 - L1MEd LINE L1 -5554 565 457 2587 36 0 10 chr9 45523136 45523445 -96747999 + AluY SINE Alu 1 306 -5 216 226 16 16 chr9 45524867 45524929 -96746515 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 741 326 115 40 chr9 45525052 45525963 -96745481 - L2 LINE L2 -1 3312 2329 33 25 0 0 chr9 45525975 45526015 -96745429 + AT_rich Low_complexity Low_complexity 1 40 0 32 26 0 0 chr9 45526148 45526187 -96745257 + AT_rich Low_complexity Low_complexity 1 39 0 1971 106 25 7 chr9 45527540 45527822 -96743622 - AluSx SINE Alu -21 291 5 35 0 0 0 chr9 45528420 45528455 -96742989 + AT_rich Low_complexity Low_complexity 1 35 0 262 255 67 40 chr9 45529352 45529501 -96741943 - L1ME LINE L1 -492 5674 5522 233 233 50 0 chr9 45529684 45529744 -96741700 + MLT1J1 LTR MaLR 69 131 -315 2015 121 3 0 chr9 45530102 45530384 -96741060 + AluSg SINE Alu 1 283 -27 387 73 0 0 chr9 45530384 45530439 -96741005 + (CATA)n Simple_repeat Simple_repeat 2 56 0 30 69 0 0 chr9 45531691 45531749 -96739695 + AT_rich Low_complexity Low_complexity 1 58 0 195 259 74 0 chr9 45533001 45533055 -96738389 - L2 LINE L2 -5 3308 3251 686 126 59 15 chr9 45533101 45533236 -96738208 + L1PA16 LINE L1 6026 6166 0 3861 224 85 27 chr9 45533294 45533487 -96737957 + L1MC4a LINE L1 6517 6697 -1111 2275 95 0 3 chr9 45533487 45533782 -96737662 - AluY SINE Alu -17 294 1 3861 224 85 27 chr9 45533782 45534641 -96736803 + L1MC4a LINE L1 6697 7559 -249 2239 85 3 10 chr9 45534641 45534946 -96736498 - AluY SINE Alu -5 306 4 3861 224 85 27 chr9 45534946 45535212 -96736232 + L1MC4a LINE L1 7559 7808 0 213 159 0 0 chr9 45535749 45535793 -96735651 + A-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr9 45535795 45535816 -96735628 + AT_rich Low_complexity Low_complexity 1 21 0 200 448 26 0 chr9 45535879 45535995 -96735449 - L2 LINE L2 -623 2691 2573 396 357 31 27 chr9 45536130 45536354 -96735090 - L2 LINE L2 -943 2371 2147 1800 181 15 33 chr9 45536712 45537105 -96734339 + L1MA5 LINE L1 5823 6208 -92 32 81 0 0 chr9 45537208 45537282 -96734162 + AT_rich Low_complexity Low_complexity 1 74 0 289 274 176 0 chr9 45537661 45537763 -96733681 + MIR3 SINE MIR 83 202 -6 23 0 0 0 chr9 45538613 45538636 -96732808 + AT_rich Low_complexity Low_complexity 1 23 0 312 313 42 72 chr9 45539544 45539634 -96731810 + Charlie2 DNA MER1_type 2 93 -2769 1594 258 59 35 chr9 45539634 45540141 -96731303 - LTR40a LTR ERVL 0 519 1 312 313 42 72 chr9 45540141 45540315 -96731129 + Charlie2 DNA MER1_type 93 258 -2604 229 250 0 0 chr9 45540485 45540537 -96730907 + LTR30 LTR ERV1 1 52 -670 519 117 56 145 chr9 45540541 45540720 -96730724 + LTR12 LTR ERV1 123 285 -429 226 227 0 40 chr9 45540721 45540796 -96730648 + LTR30 LTR ERV1 553 624 -98 517 143 59 76 chr9 45540796 45540915 -96730529 + LTR12 LTR ERV1 362 478 -236 427 321 41 6 chr9 45540919 45541122 -96730322 - MIR SINE MIR -27 235 27 827 201 44 84 chr9 45541226 45541475 -96729969 - MER8 DNA MER2_type 0 239 1 339 268 95 42 chr9 45542074 45542393 -96729051 + MLT1J2 LTR MaLR 40 450 0 603 286 80 50 chr9 45542472 45542835 -96728609 + MLT1I LTR MaLR 2 375 -34 422 263 25 17 chr9 45544520 45544638 -96726806 - MER58B DNA MER1_type -11 330 212 214 385 25 33 chr9 45545786 45545908 -96725536 - L2 LINE L2 -3 3269 3149 2081 123 13 0 chr9 45546072 45546381 -96725063 - AluSp SINE Alu 0 313 1 2390 68 7 0 chr9 45546970 45547265 -96724179 - AluSp SINE Alu -16 297 1 248 216 0 0 chr9 45547314 45547365 -96724079 - MER58B DNA MER1_type 0 341 291 1040 196 90 47 chr9 45547431 45547753 -96723691 - MER58B DNA MER1_type -5 336 1 261 291 47 16 chr9 45548684 45548811 -96722633 - L1ME LINE L1 -376 5786 5656 603 351 37 3 chr9 45549001 45549354 -96722090 + L1ME3A LINE L1 5540 5904 -266 47 19 0 0 chr9 45549678 45549732 -96721712 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr9 45549801 45549831 -96721613 + AT_rich Low_complexity Low_complexity 1 30 0 230 293 8 16 chr9 45550354 45550477 -96720967 + HAL1 LINE L1 923 1044 -1463 28 29 0 0 chr9 45551672 45551707 -96719737 + AT_rich Low_complexity Low_complexity 1 35 0 645 271 79 33 chr9 45552222 45552778 -96718666 - L1ME LINE L1 -589 5575 5004 669 191 48 8 chr9 45552855 45552981 -96718463 + FRAM SINE Alu 1 131 -45 21 57 0 0 chr9 45552990 45553025 -96718419 + AT_rich Low_complexity Low_complexity 1 35 0 409 301 52 40 chr9 45553145 45553570 -96717874 - L1ME LINE L1 -1391 4755 4326 1426 188 7 0 chr9 45553607 45553879 -96717565 + L1PA16 LINE L1 5877 6150 -16 425 341 18 6 chr9 45554325 45554495 -96716949 + MER5B DNA MER1_type 4 175 -3 4377 137 8 3 chr9 45554500 45555209 -96716235 + L1PA13 LINE L1 5451 6163 0 1147 219 118 12 chr9 45556519 45556857 -96714587 - MLT1A2 LTR MaLR 0 374 1 424 61 49 12 chr9 45556858 45556940 -96714504 + (TA)n Simple_repeat Simple_repeat 1 85 0 320 209 93 0 chr9 45556941 45557027 -96714417 - L1MC4 LINE L1 -1337 6705 6612 1779 193 18 0 chr9 45557077 45557403 -96714041 + Tigger1 DNA MER2_type 2 333 -2085 1399 161 13 67 chr9 45557461 45557759 -96713685 + AluJo SINE Alu 1 282 -30 1602 263 53 71 chr9 45558257 45558865 -96712579 - MER77 LTR ERV1 0 605 9 986 306 63 11 chr9 45559019 45559480 -96711964 - L1ME3A LINE L1 -171 5999 5515 524 278 75 63 chr9 45559665 45559996 -96711448 - LTR68 LTR ERV1 -292 448 114 742 366 149 0 chr9 45560011 45560462 -96710982 - MER69 DNA AcHobo -2008 518 1 225 313 37 55 chr9 45560665 45560828 -96710616 - L1ME LINE L1 -497 5667 5508 25 0 0 0 chr9 45561407 45561432 -96710012 + AT_rich Low_complexity Low_complexity 1 25 0 1743 156 55 0 chr9 45562478 45562656 -96708788 - AluSx SINE Alu -7 305 103 212 0 36 0 chr9 45562656 45562684 -96708760 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1743 156 55 0 chr9 45562684 45562794 -96708650 - AluSx SINE Alu -209 103 1 358 266 11 0 chr9 45562801 45562895 -96708549 - MIR SINE MIR -65 197 103 395 263 11 0 chr9 45563373 45563468 -96707976 - Zaphod DNA AcHobo -1 4030 3935 301 22 43 0 chr9 45563964 45564010 -96707434 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 1388 225 21 106 chr9 45564224 45564255 -96707189 + MLT1D LTR MaLR 1 33 -472 2033 156 37 6 chr9 45564255 45564608 -96706836 + THE1B LTR MaLR 1 364 0 1388 225 21 106 chr9 45564608 45564861 -96706583 + MLT1D LTR MaLR 33 224 -281 1108 155 10 5 chr9 45564861 45565068 -96706376 - L1MA6 LINE L1 -6 6294 6087 1388 225 21 106 chr9 45565068 45565303 -96706141 + MLT1D LTR MaLR 224 477 -28 282 340 141 35 chr9 45565910 45566344 -96705100 - L2 LINE L2 -2248 1066 590 691 241 29 23 chr9 45568471 45568645 -96702799 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr9 45568846 45568891 -96702553 + AT_rich Low_complexity Low_complexity 1 45 0 33 66 0 0 chr9 45568950 45569011 -96702433 + AT_rich Low_complexity Low_complexity 1 61 0 180 0 0 0 chr9 45569913 45569933 -96701511 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 996 338 33 7 chr9 45569963 45570386 -96701058 + LTR16B LTR ERVL 22 455 -9 210 71 0 0 chr9 45571002 45571030 -96700414 + (T)n Simple_repeat Simple_repeat 1 28 0 399 127 0 0 chr9 45571299 45571362 -96700082 + MER67A LTR ERV1 481 543 0 249 345 23 0 chr9 45571373 45571460 -96699984 + L2 LINE L2 3225 3313 0 1126 210 5 5 chr9 45571481 45571695 -96699749 - MER46A DNA MER2_type -22 214 1 617 259 92 17 chr9 45571696 45571731 -96699713 - L1M4 LINE L1 -1825 4321 4290 477 0 0 0 chr9 45571731 45571784 -96699660 + (TA)n Simple_repeat Simple_repeat 2 54 0 617 259 92 17 chr9 45571784 45572042 -96699402 - L1M4 LINE L1 -1856 4290 4006 1575 232 30 24 chr9 45572042 45572472 -96698972 - MER89 LTR ERV1 0 559 28 1922 228 7 15 chr9 45572476 45572879 -96698565 - MER89-int LTR ERV1 -1 6800 6401 1558 282 58 31 chr9 45572879 45573397 -96698047 + MER74A LTR ERVL 1 532 -26 9163 204 25 16 chr9 45573456 45575661 -96695783 - L1PA16 LINE L1 -9 6157 3909 2211 48 44 0 chr9 45575661 45575963 -96695481 - AluY SINE Alu 0 314 1 9163 204 25 16 chr9 45575963 45576899 -96694545 - L1PA16 LINE L1 -2257 3909 2983 523 235 51 3 chr9 45577699 45577883 -96693561 - MLT1A2 LTR MaLR -4 370 162 756 192 11 50 chr9 45577923 45578105 -96693339 - MLT1A2 LTR MaLR -194 180 6 23 33 0 0 chr9 45578894 45578924 -96692520 + AT_rich Low_complexity Low_complexity 1 30 0 2190 122 0 0 chr9 45578983 45579287 -96692157 - AluSx SINE Alu -8 304 1 418 336 8 0 chr9 45579353 45579487 -96691957 + L1ME LINE L1 5507 5641 -521 1681 233 76 0 chr9 45579866 45580248 -96691196 + MER74A LTR ERVL 118 528 -30 2516 63 0 0 chr9 45581723 45582025 -96689419 - AluY SINE Alu -9 302 1 196 306 111 35 chr9 45582203 45582347 -96689097 - L2 LINE L2 -443 2871 2717 341 317 10 0 chr9 45583010 45583114 -96688330 - MIR SINE MIR -48 214 110 194 276 69 0 chr9 45583231 45583289 -96688155 - L3 LINE CR1 -584 993 932 694 294 54 95 chr9 45583476 45584190 -96687254 - L2 LINE L2 -247 3066 2310 878 288 126 18 chr9 45584190 45584579 -96686865 - LTR33A LTR ERVL -6 517 87 2328 294 62 58 chr9 45584691 45585480 -96685964 - L2 LINE L2 -994 2320 1524 766 230 17 65 chr9 45585480 45585710 -96685734 + MER20 DNA MER1_type 1 219 0 2328 294 62 58 chr9 45585710 45586139 -96685305 - L2 LINE L2 -1790 1524 1098 619 252 0 0 chr9 45589350 45589477 -96681967 - MER45A DNA AcHobo 0 178 52 1395 233 86 16 chr9 45590001 45590387 -96681057 - MLT1C LTR MaLR 0 467 55 440 171 13 0 chr9 45590691 45590767 -96680677 - MER45A DNA AcHobo -1 177 101 567 59 12 0 chr9 45591164 45591249 -96680195 + L1PA13 LINE L1 6078 6163 0 22 0 0 0 chr9 45591911 45591933 -96679511 + AT_rich Low_complexity Low_complexity 1 22 0 1949 131 13 7 chr9 45592549 45593021 -96678423 + AluSq SINE Alu 2 313 0 1914 164 39 25 chr9 45594483 45594842 -96676602 - THE1B LTR MaLR 0 364 1 10536 105 32 9 chr9 45594842 45596386 -96675058 - THE1B-int LTR MaLR 0 1580 1 1954 169 28 22 chr9 45596386 45596748 -96674696 - THE1B LTR MaLR 0 364 1 325 225 127 70 chr9 45596849 45596991 -96674453 - MER69A DNA AcHobo -8 169 20 1007 247 5 0 chr9 45597003 45597226 -96674218 - MER58A DNA MER1_type 0 224 1 521 322 102 8 chr9 45599804 45600040 -96671404 - MIR SINE MIR 0 262 5 358 293 78 13 chr9 45600260 45600522 -96670922 - L1MC/D LINE L1 -692 5472 5272 48 43 0 0 chr9 45600755 45600824 -96670620 + AT_rich Low_complexity Low_complexity 1 69 0 21 36 0 0 chr9 45600894 45600922 -96670522 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr9 45601126 45601153 -96670291 + AT_rich Low_complexity Low_complexity 1 27 0 1168 182 5 0 chr9 45601180 45601372 -96670072 + AluJb SINE Alu 1 193 -119 1680 211 132 80 chr9 45601386 45602288 -96669156 + LTR1B LTR ERV1 1 1016 -4 629 171 0 0 chr9 45602290 45602401 -96669043 + AluJb SINE Alu 188 298 -14 21 0 0 0 chr9 45602401 45602422 -96669022 + AT_rich Low_complexity Low_complexity 1 21 0 274 243 117 0 chr9 45603105 45603216 -96668228 - MER103 DNA DNA -12 154 31 1005 180 58 139 chr9 45603218 45603613 -96667831 + MLT1A1 LTR MaLR 3 365 0 192 321 168 29 chr9 45603903 45604112 -96667332 + MIR SINE MIR 25 262 0 309 281 12 0 chr9 45604214 45604296 -96667148 + (CATATA)n Simple_repeat Simple_repeat 5 87 0 1417 263 55 44 chr9 45605440 45606012 -96665432 - MLT1G LTR MaLR 0 577 13 22 70 0 0 chr9 45606295 45606338 -96665106 + AT_rich Low_complexity Low_complexity 1 43 0 31 102 0 0 chr9 45606529 45606637 -96664807 + AT_rich Low_complexity Low_complexity 1 108 0 508 132 0 0 chr9 45608411 45608487 -96662957 + AluSc SINE Alu 216 291 -18 2665 198 23 45 chr9 45609758 45610378 -96661066 - L1MA6 LINE L1 -1 6299 5694 229 87 22 22 chr9 45610871 45610917 -96660527 + (TA)n Simple_repeat Simple_repeat 1 46 0 1639 199 3 3 chr9 45610958 45611264 -96660180 + AluJb SINE Alu 1 306 -6 528 289 40 32 chr9 45611748 45612025 -96659419 + L1ME3 LINE L1 5884 6162 0 25 65 0 0 chr9 45612072 45612118 -96659326 + AT_rich Low_complexity Low_complexity 1 46 0 361 297 115 33 chr9 45612582 45612764 -96658680 - MLT1J LTR MaLR -279 232 36 237 294 157 50 chr9 45614507 45614769 -96656675 - MLT1J2 LTR MaLR -24 426 137 3876 166 75 42 chr9 45615535 45616409 -96655035 - MER4D LTR ERV1 0 903 1 792 296 46 32 chr9 45616416 45616761 -96654683 + LTR16B LTR ERVL 109 458 -6 2406 157 39 2 chr9 45617063 45617478 -96653966 + MER57B LTR ERV1 1 430 -4 215 347 28 0 chr9 45617770 45617842 -96653602 + L2 LINE L2 3193 3266 -47 221 258 0 0 chr9 45619200 45619262 -96652182 + A-rich Low_complexity Low_complexity 1 62 0 1062 257 30 116 chr9 45619562 45620452 -96650992 - L1MC4 LINE L1 -258 7550 6811 358 287 74 37 chr9 45620453 45620669 -96650775 - L1M4 LINE L1 -1768 4378 4155 375 282 21 31 chr9 45620782 45621069 -96650375 + L1MEc LINE L1 2034 2317 -4079 218 95 24 0 chr9 45621175 45621217 -96650227 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 292 336 120 12 chr9 45621225 45621475 -96649969 + L1MEc LINE L1 105 381 -6015 1831 161 66 20 chr9 45621478 45621826 -96649618 + THE1B LTR MaLR 1 364 0 242 324 81 36 chr9 45621844 45622091 -96649353 + L2 LINE L2 2933 3190 -123 1960 172 11 16 chr9 45622092 45622469 -96648975 + THE1C LTR MaLR 1 375 0 1321 283 80 40 chr9 45622862 45624093 -96647351 - L1M4 LINE L1 -2598 3548 2269 30 27 0 0 chr9 45624119 45624156 -96647288 + AT_rich Low_complexity Low_complexity 1 37 0 555 264 20 10 chr9 45624158 45624359 -96647085 - L1MEc LINE L1 -1488 4727 4525 324 294 98 14 chr9 45624361 45624575 -96646869 - L1MEc LINE L1 -2027 4188 3957 14098 28 0 0 chr9 45624581 45627033 -96644411 + L1PA3 LINE L1 3705 6155 0 716 273 75 27 chr9 45627050 45627614 -96643830 - L1MEc LINE L1 -2435 3780 3190 1035 229 80 65 chr9 45627692 45628061 -96643383 - MLT1A1 LTR MaLR -30 335 1 516 204 91 8 chr9 45628172 45628304 -96643140 - L1MA3 LINE L1 0 6305 6163 366 268 146 21 chr9 45628321 45628754 -96642690 - L1MEc LINE L1 -3720 2495 2047 255 215 0 118 chr9 45628792 45628837 -96642607 - L1MEc LINE L1 -4330 2066 2036 2767 10 0 0 chr9 45628837 45629142 -96642302 - AluYa5 SINE Alu -6 305 1 255 215 0 118 chr9 45629142 45629189 -96642255 - L1MEc LINE L1 -4360 2036 1985 320 314 22 81 chr9 45629313 45629498 -96641946 + MER96 DNA MER1_type? 1 174 -1 23 0 0 0 chr9 45629584 45629607 -96641837 + AT_rich Low_complexity Low_complexity 1 23 0 294 277 6 54 chr9 45629608 45629774 -96641670 - HAL1 LINE L1 -961 1546 1389 347 260 42 16 chr9 45629958 45630150 -96641294 - L1MEc LINE L1 -5228 1168 972 859 339 13 10 chr9 45630229 45630618 -96640826 - L1MEc LINE L1 -5596 800 411 535 197 122 9 chr9 45630654 45630896 -96640548 - MLT1A1 LTR MaLR 0 390 1 196 389 0 0 chr9 45630901 45630973 -96640471 - L2 LINE L2 -358 2914 2843 1359 195 63 30 chr9 45631243 45631576 -96639868 + MER2 DNA MER2_type 1 344 0 188 292 79 22 chr9 45632024 45632113 -96639331 + L2 LINE L2 3175 3268 -4 281 338 76 22 chr9 45633361 45633586 -96637858 + L2 LINE L2 3073 3309 -4 478 327 79 25 chr9 45633620 45633987 -96637457 + L1MEc LINE L1 1436 1822 -4574 1224 280 56 30 chr9 45634037 45634465 -96636979 - MER77 LTR ERV1 -6 599 161 523 241 128 35 chr9 45634485 45634688 -96636756 - MER77 LTR ERV1 -380 225 4 25 0 0 0 chr9 45635390 45635415 -96636029 + AT_rich Low_complexity Low_complexity 1 25 0 2425 71 0 7 chr9 45636684 45636994 -96634450 - AluY SINE Alu -3 308 1 4367 80 23 0 chr9 45637272 45637871 -96633573 + L1PA7 LINE L1 5506 6118 -36 1591 71 18 13 chr9 45637871 45638089 -96633355 + L1PA8 LINE L1 5948 6172 0 299 339 71 37 chr9 45638101 45638426 -96633018 + L1MEd LINE L1 500 835 -5284 257 330 11 11 chr9 45639049 45639140 -96632304 - L1MC/D LINE L1 -2222 5586 5496 26 50 0 0 chr9 45639202 45639242 -96632202 + AT_rich Low_complexity Low_complexity 1 40 0 918 276 85 28 chr9 45639524 45639922 -96631522 - MLT1C LTR MaLR 0 467 47 237 361 89 19 chr9 45640014 45640227 -96631217 - L2 LINE L2 -90 3223 2996 695 291 302 22 chr9 45640300 45640730 -96630714 - L2 LINE L2 -747 2567 2259 236 71 48 0 chr9 45640730 45640772 -96630672 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 695 291 302 22 chr9 45640772 45640891 -96630553 - L2 LINE L2 -1055 2259 1864 27 0 0 0 chr9 45641485 45641512 -96629932 + AT_rich Low_complexity Low_complexity 1 27 0 489 331 68 70 chr9 45641518 45641725 -96629719 - L1MEd LINE L1 -5157 962 756 2117 120 3 3 chr9 45641725 45642025 -96629419 - AluSq SINE Alu -12 301 2 489 331 68 70 chr9 45642025 45642334 -96629110 - L1MEd LINE L1 -5363 756 447 535 242 81 28 chr9 45642465 45642713 -96628731 - LTR37B LTR ERV1 0 468 208 230 214 0 0 chr9 45643078 45643120 -96628324 + CT-rich Low_complexity Low_complexity 3 44 0 29 70 0 0 chr9 45644821 45644878 -96626566 + AT_rich Low_complexity Low_complexity 1 57 0 3858 279 39 31 chr9 45645002 45646693 -96624751 + L1PBa LINE L1 3 1640 -5223 4646 157 40 35 chr9 45646694 45647688 -96623756 + L1PB3 LINE L1 799 1797 -5066 * 9773 257 75 11 chr9 45647674 45651941 -96619503 + L1PB3 LINE L1 2153 6859 -11 28 0 0 0 chr9 45652037 45652065 -96619379 + AT_rich Low_complexity Low_complexity 1 28 0 1087 234 47 27 chr9 45652164 45652463 -96618981 - LTR68 LTR ERV1 -127 613 309 283 159 48 16 chr9 45652650 45652713 -96618731 - LTR68 LTR ERV1 -653 87 23 528 211 0 0 chr9 45652713 45652817 -96618627 + FRAM SINE Alu 63 166 -10 22 80 0 0 chr9 45653243 45653293 -96618151 + AT_rich Low_complexity Low_complexity 1 50 0 2604 155 8 2 chr9 45654022 45654421 -96617023 + MER61D LTR ERV1 1 401 -100 946 171 77 147 chr9 45654517 45654930 -96616514 + MER61D-int LTR ERV1 195 886 -4742 * 16677 170 30 59 chr9 45654929 45655557 -96615887 + MER61D-int LTR ERV1 609 1254 -5742 2359 62 3 49 chr9 45655557 45655881 -96615563 + AluY SINE Alu 1 309 -2 16677 170 30 59 chr9 45655881 45657332 -96614112 + MER61D-int LTR ERV1 1254 2746 -4250 2023 142 27 33 chr9 45657332 45657698 -96613746 + THE1B LTR MaLR 1 364 0 16677 170 30 59 chr9 45657698 45660043 -96611401 + MER61D-int LTR ERV1 2746 6717 -279 225 0 0 0 chr9 45660043 45660068 -96611376 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 16677 170 30 59 chr9 45660068 45660340 -96611104 + MER61D-int LTR ERV1 6717 6995 -1 2642 166 32 28 chr9 45660341 45660661 -96610783 + MER61D LTR ERV1 1 325 -176 1906 151 3 0 chr9 45660661 45660952 -96610492 + AluSg SINE Alu 2 293 -17 2642 166 32 28 chr9 45660952 45661130 -96610314 + MER61D LTR ERV1 325 501 0 857 195 19 123 chr9 45661506 45661814 -96609630 + MER93b LTR ERV1 98 373 0 1987 161 39 18 chr9 45661814 45662056 -96609388 + MER1B DNA MER1_type 1 253 -2459 1940 221 39 65 chr9 45662056 45662625 -96608819 - MLT2B3 LTR ERVL 0 554 1 1987 161 39 18 chr9 45662625 45662712 -96608732 + MER1B DNA MER1_type 253 337 -2 25 0 0 0 chr9 45663434 45663459 -96607985 + AT_rich Low_complexity Low_complexity 1 25 0 2684 196 21 45 chr9 45664416 45665037 -96606407 - L1MA6 LINE L1 -1 6299 5694 229 121 61 30 chr9 45665525 45665591 -96605853 + (TA)n Simple_repeat Simple_repeat 2 69 0 1512 196 3 38 chr9 45665618 45665935 -96605509 + AluJb SINE Alu 1 306 -6 514 292 40 32 chr9 45666419 45666696 -96604748 + L1ME3 LINE L1 5884 6162 0 17257 43 3 0 chr9 67667002 67669259 -74602185 + L1P1 LINE L1 3237 5500 -655 1622 158 63 32 chr9 67669564 67669944 -74601500 - L1MB3 LINE L1 -220 5963 5572 1907 114 27 129 chr9 67670495 67670898 -74600546 + THE1B LTR MaLR 1 362 -2 1940 146 3 0 chr9 67671066 67671353 -74600091 + AluSx SINE Alu 1 288 -24 182 36 0 36 chr9 67671359 67671387 -74600057 + (TCC)n Simple_repeat Simple_repeat 2 28 0 1603 134 4 4 chr9 67671387 67671626 -74599818 - AluSg/x SINE Alu -4 308 70 420 97 0 0 chr9 67672538 67672600 -74598844 + (TG)n Simple_repeat Simple_repeat 1 62 0 435 323 144 5 chr9 67673955 67674348 -74597096 - L1MC4a LINE L1 -1900 5908 5422 6031 134 56 6 chr9 67674671 67676491 -74594953 + L1PBa LINE L1 6 2060 -4803 234 338 0 0 chr9 67677621 67677689 -74593755 + L2 LINE L2 3203 3270 -2 671 206 0 14 chr9 67678603 67678744 -74592700 - MLT1A1 LTR MaLR 0 365 227 8908 30 0 1 chr9 67678895 67680728 -74590716 + L1PA3 LINE L1 4321 6152 -3 3648 132 9 9 chr9 67680756 67681325 -74590119 + Tigger1 DNA MER2_type 1100 1668 -750 202 151 0 75 chr9 67681497 67681550 -74589894 + CT-rich Low_complexity Low_complexity 4 52 0 1357 117 120 21 chr9 67681638 67681921 -74589523 - L1MA9 LINE L1 -5 6307 5997 27 0 0 0 chr9 67682084 67682111 -74589333 + AT_rich Low_complexity Low_complexity 1 27 0 281 164 91 0 chr9 67682973 67683028 -74588416 - L2 LINE L2 -4 3309 3250 36 23 0 0 chr9 67685031 67685074 -74586370 + AT_rich Low_complexity Low_complexity 1 43 0 1932 68 42 113 chr9 67685074 67685384 -74586060 - AluSx SINE Alu -24 288 1 762 192 0 0 chr9 67685774 67685899 -74585545 - FLAM_A SINE Alu -8 125 1 551 250 184 0 chr9 67687595 67687807 -74583637 + MIR SINE MIR 12 262 0 312 314 107 33 chr9 67692286 67692557 -74578887 + L2 LINE L2 3023 3313 0 1420 62 0 0 chr9 67692998 67693176 -74578268 - L1PA7 LINE L1 -6 6148 5971 1381 144 11 49 chr9 67693723 67693986 -74577458 - AluJo SINE Alu -19 293 41 192 174 14 116 chr9 67693986 67694055 -74577389 + L2 LINE L2 3159 3220 -93 21 36 0 0 chr9 67694379 67694407 -74577037 + AT_rich Low_complexity Low_complexity 1 28 0 3569 178 26 10 chr9 67694494 67695212 -74576232 + L1MB1 LINE L1 5431 6160 -8 1327 212 34 31 chr9 67697155 67697448 -74573996 + AluJo SINE Alu 3 296 -6 3056 215 20 13 chr9 67697561 67698690 -74572754 + L1MA5 LINE L1 4808 5946 -354 1142 236 27 8 chr9 67698691 67698950 -74572494 + AluJo SINE Alu 1 264 -48 802 148 89 0 chr9 67699054 67699223 -74572221 + L1MA5 LINE L1 6111 6294 -6 665 300 102 20 chr9 67699257 67699634 -74571810 + MLT1G1 LTR MaLR 79 561 -34 2380 198 49 43 chr9 67700972 67702027 -74569417 + L1MB8 LINE L1 4771 5836 -342 1995 133 101 5 chr9 67702055 67702430 -74569014 + MER61C LTR ERV1 14 424 -10 1200 224 67 12 chr9 67702434 67702764 -74568680 + L1MB8 LINE L1 5826 6173 -5 1213 205 110 20 chr9 67702999 67703355 -74568089 + MER4E LTR ERV1 1 388 -391 3050 139 26 0 chr9 67703451 67703941 -74567503 + L1PA10 LINE L1 5655 6157 -11 1938 152 21 0 chr9 67704325 67704615 -74566829 - AluSq SINE Alu -15 298 3 23 33 0 0 chr9 67705199 67705229 -74566215 + AT_rich Low_complexity Low_complexity 1 30 0 254 197 49 16 chr9 67705236 67705297 -74566147 - MER34C LTR ERV1 -100 485 423 1863 125 68 0 chr9 67705565 67705846 -74565598 + AluSg SINE Alu 1 300 -10 2099 123 3 10 chr9 67707299 67707609 -74563835 - AluSg SINE Alu 0 310 3 2158 142 0 0 chr9 67707960 67708270 -74563174 - AluSx SINE Alu -1 311 2 1302 162 0 78 chr9 67708694 67708965 -74562479 - AluJb SINE Alu -25 287 38 187 250 50 0 chr9 67708987 67709047 -74562397 + MIR SINE MIR 198 260 -2 1879 205 80 36 chr9 67710055 67710553 -74560891 + L1MB8 LINE L1 5653 6172 -6 23 33 0 0 chr9 67711392 67711422 -74560022 + AT_rich Low_complexity Low_complexity 1 30 0 416 316 51 13 chr9 67711635 67711793 -74559651 + L2 LINE L2 2722 2885 -429 29 28 0 0 chr9 67712088 67712124 -74559320 + AT_rich Low_complexity Low_complexity 1 36 0 987 252 36 7 chr9 67712511 67712785 -74558659 - L1MB7 LINE L1 0 6184 5903 22 0 0 0 chr9 67715757 67715779 -74555665 + AT_rich Low_complexity Low_complexity 1 22 0 462 274 85 55 chr9 67715847 67716097 -74555347 - L1P4 LINE L1 -478 5643 5396 1985 147 0 3 chr9 67716211 67716517 -74554927 + AluSq SINE Alu 1 305 -8 30 59 0 0 chr9 67716703 67716754 -74554690 + AT_rich Low_complexity Low_complexity 1 51 0 611 79 22 0 chr9 67718520 67718609 -74552835 - L1PA3 LINE L1 -2 6153 6063 27 49 0 0 chr9 67720598 67720639 -74550805 + AT_rich Low_complexity Low_complexity 1 41 0 1354 259 31 0 chr9 67721336 67721630 -74549814 + AluJo SINE Alu 1 303 -9 195 225 0 0 chr9 67721851 67721891 -74549553 - L2 LINE L2 -12 3301 3262 1972 156 7 0 chr9 67722173 67722474 -74548970 - AluSx SINE Alu -9 303 1 1993 131 7 0 chr9 67722943 67723226 -74548218 - AluSp SINE Alu -27 286 2 24 77 0 0 chr9 67724439 67724491 -74546953 + AT_rich Low_complexity Low_complexity 1 52 0 22 56 0 0 chr9 67724835 67724871 -74546573 + AT_rich Low_complexity Low_complexity 1 36 0 1922 162 0 0 chr9 67724983 67725286 -74546158 + AluSx SINE Alu 6 308 -4 239 217 0 0 chr9 67726273 67726319 -74545125 + (CA)n Simple_repeat Simple_repeat 1 46 0 278 183 195 12 chr9 67728478 67728560 -74542884 + MER5A DNA MER1_type 10 106 -83 6759 66 9 23 chr9 67729054 67730692 -74540752 - SVA Other Other -727 1386 1 387 73 0 0 chr9 67730702 67730757 -74540687 + (GGGAGA)n Simple_repeat Simple_repeat 1 55 0 2358 79 0 0 chr9 67731162 67731453 -74539991 - AluY SINE Alu -20 291 1 1400 216 10 34 chr9 67731649 67731945 -74539499 - AluJo SINE Alu -23 289 1 1555 209 0 7 chr9 67731979 67732261 -74539183 + AluJb SINE Alu 3 282 -30 6066 60 1 3 chr9 67732650 67733422 -74538022 + L1PA5 LINE L1 5376 6146 -8 1175 227 30 54 chr9 67733796 67734091 -74537353 + AluJb SINE Alu 13 300 -12 1976 138 0 28 chr9 67734262 67734600 -74536844 - AluSx SINE Alu 0 331 2 580 212 0 0 chr9 67734854 67734953 -74536491 - FLAM_A SINE Alu -43 99 1 204 324 139 9 chr9 67737292 67737400 -74534044 + MIR SINE MIR 20 141 -121 224 378 81 14 chr9 67738006 67738228 -74533216 + MIR SINE MIR 20 256 -6 10282 28 2 0 chr9 67738248 67740247 -74531197 - L1PA2 LINE L1 0 6155 4155 595 242 0 24 chr9 67740397 67740521 -74530923 + FLAM_A SINE Alu 6 126 -16 207 88 0 0 chr9 67740552 67740586 -74530858 + (TTG)n Simple_repeat Simple_repeat 2 35 0 636 143 52 39 chr9 67740976 67741130 -74530314 - MER21A LTR ERV1 -29 902 747 717 164 45 0 chr9 67741136 67741270 -74530174 + Tigger7 DNA MER2_type 2348 2487 0 2249 154 9 42 chr9 67742295 67742729 -74528715 + L1MC1 LINE L1 5914 6333 0 2083 135 0 7 chr9 67742737 67743033 -74528411 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr9 67743075 67743098 -74528346 + AT_rich Low_complexity Low_complexity 1 23 0 1970 169 3 0 chr9 67743101 67743409 -74528035 + AluSq SINE Alu 1 309 -4 27 0 0 0 chr9 67743530 67743557 -74527887 + AT_rich Low_complexity Low_complexity 1 27 0 1887 202 52 9 chr9 67743970 67744411 -74527033 + MER68 LTR ERV1 1 460 -102 560 29 0 0 chr9 67744429 67744499 -74526945 - L1P LINE L1 -945 5201 5132 2205 38 0 0 chr9 67744499 67744814 -74526630 + L1PA2 LINE L1 5876 6195 0 482 163 12 0 chr9 67744819 67744899 -74526545 + MER68 LTR ERV1 481 561 -1 1367 214 13 29 chr9 67745260 67745383 -74526061 + AluJb SINE Alu 1 124 -188 191 61 30 0 chr9 67745383 67745416 -74526028 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1367 214 13 29 chr9 67745416 67745600 -74525844 + AluJb SINE Alu 124 303 -9 880 187 0 0 chr9 67745635 67745774 -74525670 + FAM SINE Alu 22 160 -25 244 291 0 0 chr9 67746076 67746131 -74525313 + (TG)n Simple_repeat Simple_repeat 2 56 0 1918 198 33 12 chr9 67746384 67746809 -74524635 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr9 67747078 67747100 -74524344 + AT_rich Low_complexity Low_complexity 1 22 0 210 289 97 26 chr9 67747639 67747753 -74523691 + MIR SINE MIR 94 215 -47 522 0 0 0 chr9 67747972 67748030 -74523414 + (TA)n Simple_repeat Simple_repeat 1 58 0 472 206 10 0 chr9 67748461 67748558 -74522886 - U6 snRNA snRNA -1 106 9 637 169 127 0 chr9 67749518 67749669 -74521775 + FLAM_C SINE Alu 1 166 0 195 184 0 0 chr9 67750477 67750515 -74520929 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2287 111 0 0 chr9 67750564 67750862 -74520582 + AluSc SINE Alu 1 298 -11 190 257 129 14 chr9 67751549 67751619 -74519825 + L2 LINE L2 3138 3215 -57 21 0 0 0 chr9 67752327 67752348 -74519096 + AT_rich Low_complexity Low_complexity 1 21 0 376 255 83 21 chr9 67752728 67752963 -74518481 - Charlie8 DNA MER1_type -990 1427 81 21 57 0 0 chr9 67753185 67753220 -74518224 + AT_rich Low_complexity Low_complexity 1 35 0 267 168 274 124 chr9 67753856 67753969 -74517475 - FLAM_A SINE Alu 0 133 4 226 282 129 48 chr9 67753984 67754108 -74517336 + MER5A DNA MER1_type 56 189 0 442 295 140 47 chr9 67755781 67755997 -74515447 + MIR SINE MIR 4 236 -26 1713 182 0 7 chr9 67756005 67756301 -74515143 - AluJo SINE Alu -18 294 1 352 246 78 42 chr9 67756400 67756542 -74514902 + MER104 DNA Tc2 34 180 0 219 217 0 50 chr9 67756989 67757049 -74514395 + L2 LINE L2 3216 3272 0 31 58 0 0 chr9 67757124 67757176 -74514268 + AT_rich Low_complexity Low_complexity 1 52 0 332 319 42 7 chr9 67757675 67757819 -74513625 - L1ME LINE L1 -445 5676 5528 482 66 11 33 chr9 67758038 67758129 -74513315 + (TA)n Simple_repeat Simple_repeat 1 89 0 2194 115 0 0 chr9 67758157 67758461 -74512983 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr9 67758510 67758538 -74512906 + AT_rich Low_complexity Low_complexity 1 28 0 326 299 91 110 chr9 67760035 67760643 -74510801 - L1M2 LINE L1 -5704 1145 550 1128 261 48 52 chr9 67761033 67761611 -74509833 - L1ME2 LINE L1 -134 6030 5455 2168 106 0 53 chr9 67761928 67762250 -74509194 + AluSp SINE Alu 1 305 -8 1650 146 12 0 chr9 67762306 67762552 -74508892 - AluSx SINE Alu -19 293 45 273 57 0 0 chr9 67762683 67762718 -74508726 + (CA)n Simple_repeat Simple_repeat 1 35 0 319 272 165 87 chr9 67763468 67763861 -74507583 + L1M2 LINE L1 472 895 -5954 247 95 0 111 chr9 67764897 67764960 -74506484 - Alu SINE Alu 0 300 245 3327 198 32 56 chr9 67765365 67766336 -74505108 - L1MC2 LINE L1 -912 5234 4287 936 169 35 18 chr9 67766342 67766622 -74504822 + L1MC2 LINE L1 5246 5955 -214 12466 27 0 0 chr9 67766627 67768863 -74502581 + L1PA2 LINE L1 3906 6142 -13 2828 37 0 0 chr9 67768537 67768863 -74502581 + L1PA2 LINE L1 5817 6175 0 258 0 30 0 chr9 67768863 67768896 -74502548 + (TAAA)n Simple_repeat Simple_repeat 3 80 0 1015 210 107 0 chr9 67768898 67769170 -74502274 + L1MC2 LINE L1 6043 6343 -1 3185 189 53 78 chr9 67769192 67769894 -74501550 + L1MB7 LINE L1 5317 5994 -190 971 173 0 42 chr9 67769894 67770062 -74501382 + FRAM SINE Alu 1 161 -5 3185 189 53 78 chr9 67770062 67770249 -74501195 + L1MB7 LINE L1 5994 6184 0 5235 97 50 26 chr9 67771182 67771984 -74499460 - Tigger4(Zombi) DNA MER2_type 0 2731 1911 2544 175 119 0 chr9 67771987 67772456 -74498988 - Tigger4(Zombi) DNA MER2_type -2205 526 2 365 158 0 0 chr9 67772409 67772466 -74498978 + MER46A DNA MER2_type 97 153 -83 * 201 293 0 53 chr9 67774722 67774797 -74496647 + L2 LINE L2 3182 3252 -20 1376 150 55 20 chr9 67775091 67775345 -74496099 + AluSx SINE Alu 33 295 -17 510 270 152 24 chr9 67775352 67775400 -74496044 + L1MC4 LINE L1 7709 7749 -293 2201 105 0 23 chr9 67775400 67775704 -74495740 - AluY SINE Alu -14 297 1 510 270 152 24 chr9 67775704 67775845 -74495599 + L1MC4 LINE L1 7749 7871 -171 351 0 0 0 chr9 67775845 67775884 -74495560 + (TG)n Simple_repeat Simple_repeat 2 40 0 510 270 152 24 chr9 67775884 67775989 -74495455 + L1MC4 LINE L1 7871 8042 0 1084 166 113 46 chr9 67778256 67778558 -74492886 - MER33 DNA MER1_type -2 322 1 22 0 0 0 chr9 67778713 67778735 -74492709 + AT_rich Low_complexity Low_complexity 1 22 0 252 117 65 65 chr9 67779080 67779157 -74492287 + AluJb SINE Alu 41 117 -185 31 0 0 0 chr9 67779202 67779233 -74492211 + AT_rich Low_complexity Low_complexity 1 31 0 1443 181 30 53 chr9 67780125 67780521 -74490923 - MLT2B3 LTR ERVL 0 554 183 2293 166 126 25 chr9 67780545 67782231 -74489213 - SATR1 Satellite Satellite 0 2246 45 2502 72 0 0 chr9 67782231 67782535 -74488909 + AluY SINE Alu 1 304 -7 2293 166 126 25 chr9 67782535 67782586 -74488858 - SATR1 Satellite Satellite -2201 45 1 2399 180 116 19 chr9 67785500 67789349 -74482095 - SATR1 Satellite Satellite -110 4220 1 1398 195 75 0 chr9 67789349 67789697 -74481747 + L1PA15 LINE L1 4964 5337 -809 431 125 411 0 chr9 67789697 67789809 -74481635 + LTR1B LTR ERV1 427 584 -242 1136 144 53 0 chr9 67789814 67790002 -74481442 + L1PA15 LINE L1 5347 5544 -621 2897 191 59 28 chr9 67790002 67790756 -74480688 + LTR1B LTR ERV1 1 785 0 4076 141 8 10 chr9 67790759 67791378 -74480066 + L1PA15 LINE L1 5544 6161 -4 328 333 44 5 chr9 67791399 67791603 -74479841 + L1ME4a LINE L1 5646 5857 -264 25 65 0 0 chr9 67791867 67791913 -74479531 + AT_rich Low_complexity Low_complexity 1 46 0 375 192 13 13 chr9 67792860 67792952 -74478492 - L1ME1 LINE L1 0 6184 6086 1617 270 76 35 chr9 67792960 67793207 -74478237 - L1M4 LINE L1 -2284 3862 3626 2231 108 3 3 chr9 67793207 67793513 -74477931 - AluSp SINE Alu -7 306 1 1617 270 76 35 chr9 67793513 67793559 -74477885 - L1M4 LINE L1 -2520 3626 3583 1692 212 58 0 chr9 67793559 67793904 -74477540 - MER47A DNA MER2_type -1 365 1 1617 270 76 35 chr9 67793904 67794623 -74476821 - L1M4 LINE L1 -2563 3583 2808 * 3434 227 120 10 chr9 67794614 67795178 -74476266 - L1MC4 LINE L1 -364 7678 7178 2084 123 3 3 chr9 67795178 67795470 -74475974 - AluSx SINE Alu -20 292 1 3434 227 120 10 chr9 67795470 67795910 -74475534 - L1MC4 LINE L1 -864 7178 6563 26 64 0 0 chr9 67796612 67796659 -74474785 + AT_rich Low_complexity Low_complexity 1 47 0 1964 142 7 0 chr9 67796793 67797114 -74474330 + AluSx SINE Alu 1 323 0 29 59 0 15 chr9 67797371 67797411 -74474033 + AT_rich Low_complexity Low_complexity 1 41 -26 573 144 10 10 chr9 67797411 67797508 -74473936 + L1PB1 LINE L1 6053 6149 -2 29 59 0 15 chr9 67797508 67797535 -74473909 + AT_rich Low_complexity Low_complexity 41 67 0 1461 225 3 7 chr9 67797783 67798081 -74473363 + AluJb SINE Alu 1 297 -15 445 189 0 0 chr9 67798081 67798155 -74473289 + L1MB8 LINE L1 5495 5568 -598 533 246 0 54 chr9 67798174 67798304 -74473140 - FLAM_C SINE Alu -19 124 2 2176 217 51 60 chr9 67798306 67798864 -74472580 + L1MB8 LINE L1 5557 6111 -67 1444 229 0 0 chr9 67798864 67799170 -74472274 - AluJb SINE Alu -6 306 1 2176 217 51 60 chr9 67799170 67799233 -74472211 + L1MB8 LINE L1 6111 6173 -5 1978 141 0 7 chr9 67799253 67799552 -74471892 + AluSx SINE Alu 6 302 -10 1381 210 3 23 chr9 67799567 67799867 -74471577 + AluJo SINE Alu 11 304 -8 1986 152 3 0 chr9 67800387 67800689 -74470755 + AluSg SINE Alu 1 303 -7 240 217 9 94 chr9 67800886 67800992 -74470452 - LTR37A LTR ERV1 -89 337 241 21 0 0 0 chr9 67800993 67801014 -74470430 + AT_rich Low_complexity Low_complexity 1 21 0 955 211 53 4 chr9 67801156 67801310 -74470134 - AluJo SINE Alu -26 286 116 207 0 0 0 chr9 67801310 67801333 -74470111 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 955 211 53 4 chr9 67801333 67801405 -74470039 - AluJo SINE Alu -196 116 49 673 223 0 23 chr9 67801469 67801599 -74469845 - FLAM_C SINE Alu -6 127 1 1086 257 104 20 chr9 67801690 67802214 -74469230 + L2 LINE L2 2541 3097 -216 1290 228 27 10 chr9 67802218 67802516 -74468928 - AluJo SINE Alu -9 303 1 1529 179 22 63 chr9 67802525 67802888 -74468556 - MLT1D LTR MaLR -8 497 150 621 199 15 22 chr9 67802891 67803027 -74468417 + FLAM_C SINE Alu 9 143 0 1265 227 10 32 chr9 67803029 67803337 -74468107 + AluJo SINE Alu 1 301 -11 2340 259 50 57 chr9 67803432 67803855 -74467589 + MER21B LTR ERV1 19 443 -420 1454 174 0 100 chr9 67803855 67804195 -74467249 - AluJb SINE Alu -5 307 2 2340 259 50 57 chr9 67804195 67804276 -74467168 + MER21B LTR ERV1 443 523 -340 1506 189 32 11 chr9 67804276 67804557 -74466887 + AluJo SINE Alu 12 298 -14 2340 259 50 57 chr9 67804557 67804844 -74466600 + MER21B LTR ERV1 523 806 -57 1781 158 3 7 chr9 67805391 67805682 -74465762 + AluSx SINE Alu 1 290 -22 1802 152 7 19 chr9 67805836 67806146 -74465298 - AluSg1 SINE Alu -3 306 1 1556 209 18 6 chr9 67806307 67806646 -74464798 + L1M3 LINE L1 5480 5822 -361 541 238 0 0 chr9 67806654 67806755 -74464689 + AluJ/FLAM SINE Alu 2 102 -210 5965 239 67 25 chr9 67807298 67809706 -74461738 + L1M3 LINE L1 3095 5610 -570 293 157 22 101 chr9 67810514 67810603 -74460841 + L1MA9 LINE L1 6126 6207 -105 606 217 26 26 chr9 67810604 67810756 -74460688 + L1M3 LINE L1 5442 5593 -587 * 8018 211 12 93 chr9 67810747 67812397 -74459047 + L1 LINE L1 2873 4431 -1715 1094 163 0 0 chr9 67812397 67812569 -74458875 + AluSp SINE Alu 136 307 -6 8018 211 12 93 chr9 67812569 67813300 -74458144 + L1 LINE L1 4431 5219 -927 369 120 7 63 chr9 67813308 67813450 -74457994 + (CCCTAA)n Simple_repeat Simple_repeat 2 135 0 311 128 0 47 chr9 67813493 67813579 -74457865 + (CCCTAA)n Simple_repeat Simple_repeat 2 83 0 3295 156 8 14 chr9 67813723 67814358 -74457086 - TAR1 Satellite telomeric -43 2068 1438 3756 147 2 0 chr9 67814508 67815093 -74456351 + L1PA11 LINE L1 3972 4557 -1589 4859 107 32 27 chr9 67816373 67817664 -74453780 + L1PA11 LINE L1 4548 5843 -331 1433 107 74 10 chr9 67817809 67820687 -74450757 + GSATII Satellite centromeric 1 3062 -32 1167 154 5 0 chr9 67822430 67822631 -74448813 + MER2 DNA MER2_type 28 229 -116 1919 127 4 4 chr9 67823485 67823760 -74447684 + AluSx SINE Alu 1 275 -37 336 102 0 0 chr9 67823764 67823813 -74447631 + (CA)n Simple_repeat Simple_repeat 2 50 0 754 152 30 8 chr9 67823875 67824007 -74447437 + MER5A DNA MER1_type 32 166 -23 652 183 0 0 chr9 67824011 67824126 -74447318 - Tigger1 DNA MER2_type 0 2418 2304 883 136 136 13 chr9 67824130 67824284 -74447160 + FRAM SINE Alu 1 170 -6 11874 96 47 8 chr9 67824284 67825568 -74445876 - Tigger1 DNA MER2_type -109 2309 928 2071 103 4 4 chr9 67825568 67825902 -74445542 + AluSg SINE Alu 1 334 0 11874 96 47 8 chr9 67825902 67826456 -74444988 - Tigger1 DNA MER2_type -1490 928 397 722 228 92 53 chr9 67826499 67826780 -74444664 - HAL1b LINE L1 -618 730 439 587 247 149 75 chr9 67826779 67827302 -74444142 - HAL1b LINE L1 -710 638 77 * 314 171 43 0 chr9 67827391 67827508 -74443936 + (TTAA)n Simple_repeat Simple_repeat 1 122 0 189 132 0 0 chr9 67828427 67828465 -74442979 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 1250 164 28 5 chr9 67828499 67828713 -74442731 - MER20 DNA MER1_type 0 219 1 2206 114 0 28 chr9 67830288 67830605 -74440839 - AluSx SINE Alu -4 308 1 31 44 0 0 chr9 67831517 67831562 -74439882 + AT_rich Low_complexity Low_complexity 1 45 0 786 65 47 0 chr9 67832247 67832354 -74439090 + L1PA10 LINE L1 6054 6165 -3 264 86 0 0 chr9 67832427 67832462 -74438982 + U2 snRNA snRNA 1 35 -153 2278 108 3 0 chr9 67832773 67833069 -74438375 - AluSx SINE Alu -15 297 1 202 151 0 75 chr9 67834542 67834595 -74436849 + CT-rich Low_complexity Low_complexity 4 52 0 1268 120 120 21 chr9 67834683 67834966 -74436478 - L1MA9 LINE L1 -5 6307 5997 27 0 0 0 chr9 67835129 67835156 -74436288 + AT_rich Low_complexity Low_complexity 1 27 0 283 164 91 0 chr9 67836018 67836073 -74435371 - L2 LINE L2 -4 3309 3250 36 23 0 0 chr9 67838076 67838119 -74433325 + AT_rich Low_complexity Low_complexity 1 43 0 1929 68 42 113 chr9 67838119 67838429 -74433015 - AluSx SINE Alu -24 288 1 770 192 0 0 chr9 67838819 67838944 -74432500 - FLAM_A SINE Alu -8 125 1 565 251 181 0 chr9 67840636 67840851 -74430593 + MIR SINE MIR 9 262 0 243 0 0 0 chr9 67842782 67842809 -74428635 + (T)n Simple_repeat Simple_repeat 1 27 0 2614 50 0 0 chr9 67843821 67844123 -74427321 + AluY SINE Alu 1 302 -9 22 35 0 0 chr9 67844172 67844201 -74427243 + AT_rich Low_complexity Low_complexity 1 29 0 180 270 206 40 chr9 67844499 67844625 -74426819 - L2 LINE L2 -4 3268 3122 230 320 39 62 chr9 67844712 67844840 -74426604 - L2 LINE L2 -200 3072 2948 186 333 105 9 chr9 67844906 67845020 -74426424 - L2 LINE L2 -456 2858 2734 183 80 0 0 chr9 67845632 67845657 -74425787 + (T)n Simple_repeat Simple_repeat 1 25 0 257 27 54 0 chr9 67846138 67846175 -74425269 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 1760 117 12 4 chr9 67846197 67846446 -74424998 - AluSx SINE Alu -27 285 35 2262 82 10 20 chr9 67847024 67847328 -74424116 - AluSc SINE Alu -8 301 1 203 171 0 0 chr9 67848467 67848508 -74422936 + T-rich Low_complexity Low_complexity 1 41 0 40189 36 21 8 chr9 67848514 67854587 -74416857 - L1PA3 LINE L1 0 6155 1 2682 143 17 2 chr9 67854697 67855164 -74416280 - L1MB1 LINE L1 0 6168 5695 1917 167 10 13 chr9 67855308 67855620 -74415824 - AluJo SINE Alu -1 311 1 195 222 143 0 chr9 67855899 67855962 -74415482 - MIR SINE MIR -113 149 78 1683 203 7 3 chr9 67856841 67857147 -74414297 - AluJb SINE Alu -5 307 1 1646 162 16 47 chr9 67857148 67857469 -74413975 - AluJo SINE Alu 0 312 2 2768 16 0 3 chr9 67857851 67858162 -74413282 + AluYa5 SINE Alu 1 310 -1 243 0 0 0 chr9 67858432 67858459 -74412985 + (T)n Simple_repeat Simple_repeat 1 27 0 233 262 115 0 chr9 67860740 67860801 -74410643 + L2 LINE L2 3204 3271 -1 256 241 129 69 chr9 67860806 67860922 -74410522 + MER5B DNA MER1_type 3 125 -53 306 264 28 51 chr9 67860922 67861100 -74410344 - L1MC5 LINE L1 -25 7936 7763 827 224 117 69 chr9 67861378 67861815 -74409629 - MER39 LTR ERV1 0 707 250 2118 105 0 66 chr9 67861990 67862323 -74409121 - AluSx SINE Alu -1 311 1 324 294 73 0 chr9 67862382 67862491 -74408953 - L1ME3 LINE L1 -81 6081 5965 1817 178 0 14 chr9 67863830 67864123 -74407321 + AluJb SINE Alu 1 289 -23 299 153 333 0 chr9 67864434 67864506 -74406938 + Tigger3(Golem) DNA MER2_type 2 97 -2932 * 1198 126 10 24 chr9 67864504 67864711 -74406733 + Tigger3(Golem) DNA MER2_type 2801 3004 -25 2479 138 25 11 chr9 67864723 67865172 -74406272 - L1MB1 LINE L1 0 6168 5714 6995 177 48 64 chr9 67865367 67867064 -74404380 + MER52A LTR ERV1 1 1755 0 35 24 0 0 chr9 67869194 67869236 -74402208 + AT_rich Low_complexity Low_complexity 1 42 0 2148 131 0 3 chr9 67869616 67869921 -74401523 + AluSx SINE Alu 1 304 -8 624 261 90 52 chr9 67870624 67870924 -74400520 + L1ME LINE L1 5545 5852 -297 629 212 9 0 chr9 67870970 67871083 -74400361 - FRAM SINE Alu -22 154 41 6031 156 12 11 chr9 67871188 67872947 -74398497 + L1PB1 LINE L1 4396 6151 0 319 382 7 7 chr9 67876150 67876302 -74395142 + L2 LINE L2 2636 2787 -527 271 284 35 52 chr9 67876786 67876902 -74394542 - MIR SINE MIR -118 144 31 523 128 239 0 chr9 67877047 67877164 -74394280 - MLT1E3 LTR MaLR -6 618 474 7111 137 2 3 chr9 67877268 67878402 -74393042 + L1P LINE L1 1189 2321 -3825 1969 242 68 22 chr9 67878397 67879372 -74392072 + L1MEc LINE L1 1874 2843 -3372 * 430 191 0 45 chr9 67879376 67879465 -74391979 + MER21B LTR ERV1 1 85 -778 322 250 53 0 chr9 67879492 67879568 -74391876 + MER21B LTR ERV1 19 98 -765 16998 96 4 55 chr9 67879697 67879838 -74391606 + L1P LINE L1 2700 2847 -3299 2117 133 3 0 chr9 67879838 67880146 -74391298 + AluSp SINE Alu 1 309 -4 16998 96 4 55 chr9 67880146 67880400 -74391044 + L1P LINE L1 2847 3112 -3034 2396 73 3 3 chr9 67880400 67880703 -74390741 + AluY SINE Alu 1 303 -8 16998 96 4 55 chr9 67880703 67883010 -74388434 + L1P LINE L1 3112 5265 -881 921 241 66 11 chr9 67883163 67883540 -74387904 + L1MEc LINE L1 3094 3491 -2724 289 340 34 25 chr9 67884019 67884155 -74387289 - MER5A DNA MER1_type -3 175 44 218 219 68 137 chr9 67884039 67884185 -74387259 + MER5A DNA MER1_type 42 177 -12 * 2312 202 14 67 chr9 67884390 67884969 -74386475 + LTR55 LTR ERV 1 548 0 1767 174 42 55 chr9 67885887 67886266 -74385178 + MLT1A2 LTR MaLR 1 374 0 393 282 106 27 chr9 67886348 67886558 -74384886 - MIR SINE MIR -36 226 4 22 0 0 0 chr9 67887380 67887402 -74384042 + AT_rich Low_complexity Low_complexity 1 22 0 743 126 24 8 chr9 67888379 67888506 -74382938 + L1MA5A LINE L1 5905 6033 -264 1113 216 97 128 chr9 67888624 67889309 -74382135 + L1MC5 LINE L1 7008 7658 -303 2103 118 3 0 chr9 67889309 67889596 -74381848 - AluSx SINE Alu -21 291 4 1113 216 97 128 chr9 67889596 67889838 -74381606 + L1MC5 LINE L1 7658 7906 -55 648 70 0 0 chr9 67890015 67890101 -74381343 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 2129 108 11 0 chr9 67890107 67890384 -74381060 - AluSx SINE Alu -27 285 6 229 227 261 0 chr9 67890448 67890536 -74380908 - MIR SINE MIR -70 192 82 245 29 29 0 chr9 67890898 67890932 -74380512 + (TG)n Simple_repeat Simple_repeat 2 36 0 199 349 93 0 chr9 67891243 67891329 -74380115 - L2 LINE L2 -61 3211 3118 461 337 45 16 chr9 67891385 67891628 -74379816 - L2 LINE L2 -846 2468 2219 379 267 147 17 chr9 67891800 67892032 -74379412 - L2 LINE L2 -1497 1817 1556 614 193 67 0 chr9 67892168 67892287 -74379157 + MER20 DNA MER1_type 93 219 0 24 32 0 0 chr9 67893329 67893360 -74378084 + AT_rich Low_complexity Low_complexity 1 31 0 788 272 46 17 chr9 67893401 67893640 -74377804 + L2 LINE L2 2147 2392 -922 1798 156 125 3 chr9 67893947 67894268 -74377176 + MLT1A1 LTR MaLR 5 364 -1 873 108 78 0 chr9 67895763 67895892 -74375552 - MER85 DNA T2_type 0 139 1 1109 164 9 73 chr9 67896096 67896328 -74375116 + MER20 DNA MER1_type 1 217 -2 280 235 12 25 chr9 67898273 67898354 -74373090 - MIR SINE MIR -27 235 156 2308 120 0 0 chr9 67899995 67900425 -74371019 + AluSx SINE Alu 1 430 0 743 308 52 4 chr9 67900512 67900762 -74370682 - MIR SINE MIR 0 262 1 228 284 123 0 chr9 67900850 67900931 -74370513 + L1MEd LINE L1 270 360 -5759 249 261 0 15 chr9 67901506 67901571 -74369873 - L1 LINE L1 -1222 4924 4861 217 325 75 42 chr9 67901756 67901876 -74369568 - MIR SINE MIR -133 129 6 186 43 0 0 chr9 67902205 67902228 -74369216 + (CA)n Simple_repeat Simple_repeat 2 24 0 403 345 0 9 chr9 67903693 67903806 -74367638 - L2 LINE L2 -1 3271 3160 657 179 34 8 chr9 67905168 67905285 -74366159 - MLT1A1 LTR MaLR 0 365 246 316 284 101 0 chr9 67905931 67906062 -74365382 + MIR SINE MIR 57 200 -62 1753 183 35 6 chr9 67906083 67906411 -74365033 - MLT1A1 LTR MaLR 0 365 10 1655 206 19 25 chr9 67906411 67906775 -74364669 + L1PA12 LINE L1 13 374 -7207 1087 264 42 72 chr9 67908658 67909210 -74362234 - MLT1K LTR MaLR 0 588 54 836 177 81 27 chr9 67909466 67909652 -74361792 + MLT1D LTR MaLR 1 196 -309 2858 162 34 19 chr9 67910315 67910841 -74360603 + L1MA9 LINE L1 5316 5849 -463 1970 185 35 37 chr9 67910843 67911386 -74360058 - MLT2A2 LTR ERVL -8 546 2 2770 147 24 11 chr9 67911388 67911845 -74359599 + L1MA9 LINE L1 5848 6310 -2 266 360 77 24 chr9 67913719 67913888 -74357556 + MIR3 SINE MIR 15 190 -66 211 304 130 22 chr9 67914260 67914352 -74357092 + L2 LINE L2 3170 3271 -1 1443 219 78 3 chr9 67914671 67915041 -74356403 - L1MB7 LINE L1 -23 6161 5764 217 348 214 0 chr9 67915249 67915338 -74356106 - L2 LINE L2 -16 3256 3149 715 201 55 0 chr9 67915338 67915502 -74355942 - MIR SINE MIR 0 262 90 393 337 100 40 chr9 67915538 67916037 -74355407 - L2 LINE L2 -888 2426 1898 5234 168 16 4 chr9 67916137 67917705 -74353739 - L1PB1 LINE L1 -124 6027 4446 454 173 154 25 chr9 67918215 67918377 -74353067 + MER113 DNA MER1_type? 7 189 -332 2566 52 0 3 chr9 67918420 67918728 -74352716 + AluY SINE Alu 1 307 -4 352 275 89 51 chr9 67919258 67919285 -74352159 - MIR SINE MIR -3 259 234 2296 95 0 13 chr9 67919285 67919590 -74351854 + AluSg SINE Alu 1 301 -9 352 275 89 51 chr9 67919590 67919798 -74351646 - MIR SINE MIR -28 234 15 305 271 52 10 chr9 67920262 67920358 -74351086 + L2 LINE L2 3168 3267 -5 226 182 0 0 chr9 67922101 67922145 -74349299 + MIR3 SINE MIR 164 207 -1 393 188 0 0 chr9 67922196 67922276 -74349168 + (TG)n Simple_repeat Simple_repeat 1 80 0 661 244 115 19 chr9 67922276 67922485 -74348959 + Charlie8 DNA MER1_type 36 264 -2153 471 258 201 13 chr9 67922731 67922890 -74348554 + MIR SINE MIR 8 196 -66 343 256 133 60 chr9 67923431 67923840 -74347604 - L1PA8A LINE L1 -697 5434 4996 1027 236 119 36 chr9 67924008 67924394 -74347050 - MLT1J2 LTR MaLR -31 419 2 576 274 13 51 chr9 67924394 67924628 -74346816 - L1M4 LINE L1 -1307 4839 4615 301 158 18 35 chr9 67924899 67924956 -74346488 - LTR40a LTR ERVL -450 69 14 2109 113 0 0 chr9 67925052 67925386 -74346058 - AluSx SINE Alu 0 312 1 416 157 0 116 chr9 67925900 67926021 -74345423 + L1M4 LINE L1 4948 5054 -1092 8894 166 46 6 chr9 67926245 67929439 -74342005 + L1PB1 LINE L1 1087 4557 -2305 6360 126 18 5 chr9 67929445 67930906 -74340538 + L1PB1 LINE L1 5392 6867 0 289 322 66 46 chr9 67931532 67931684 -74339760 + MIR SINE MIR 86 240 -22 566 106 18 46 chr9 67934424 67934538 -74336906 - L1MC3 LINE L1 -488 7507 7189 233 279 0 0 chr9 67934538 67934599 -74336845 - MLT1F1 LTR MaLR -443 124 64 1232 143 77 44 chr9 67934606 67934878 -74336566 - L1MC3 LINE L1 -666 7119 6839 187 275 0 0 chr9 67935079 67935119 -74336325 - MIR SINE MIR -171 91 52 22 70 0 0 chr9 67935481 67935524 -74335920 + AT_rich Low_complexity Low_complexity 1 43 0 2566 55 7 0 chr9 67935771 67936080 -74335364 + AluY SINE Alu 1 311 0 741 122 52 0 chr9 67936097 67936212 -74335232 + FLAM_A SINE Alu 1 121 -12 379 219 219 28 chr9 67936313 67936528 -74334916 - MER112 DNA MER1_type 0 256 1 226 213 0 0 chr9 67937479 67937526 -74333918 + GA-rich Low_complexity Low_complexity 1 47 0 793 122 139 0 chr9 67937872 67938016 -74333428 - MSTB LTR MaLR -293 164 1 562 257 40 14 chr9 67938045 67938193 -74333251 - L2 LINE L2 0 3272 3121 637 254 17 86 chr9 67938554 67938692 -74332752 + MIR SINE MIR 35 153 -109 2332 71 0 0 chr9 67938692 67938996 -74332448 - AluSx SINE Alu 0 304 1 637 254 17 86 chr9 67938996 67939088 -74332356 + MIR SINE MIR 153 250 -12 3449 258 70 63 chr9 67939450 67940365 -74331079 + HAL1 LINE L1 1 908 -1599 4644 106 21 15 chr9 67940365 67941056 -74330388 + L1MA3 LINE L1 5555 6253 -52 2332 81 10 0 chr9 67941056 67941352 -74330092 + AluSp SINE Alu 2 300 -13 4644 106 21 15 chr9 67941352 67941405 -74330039 + L1MA3 LINE L1 6253 6304 -1 3449 258 70 63 chr9 67941405 67941888 -74329556 + HAL1 LINE L1 908 1414 -1093 2005 165 10 52 chr9 67941888 67942293 -74329151 - MLT1B LTR MaLR 0 390 3 3449 258 70 63 chr9 67942293 67942454 -74328990 + HAL1 LINE L1 1414 1572 -935 986 98 8 0 chr9 67942454 67942586 -74328858 + AluSg SINE Alu 1 133 -177 2218 123 0 0 chr9 67942586 67942896 -74328548 + AluSg SINE Alu 1 310 0 310 278 22 3 chr9 67943176 67943278 -74328166 + MLT1I LTR MaLR 324 403 -6 1626 247 61 52 chr9 67943286 67943905 -74327539 + HAL1 LINE L1 1597 2221 -286 323 119 15 0 chr9 67944188 67944255 -74327189 + (TA)n Simple_repeat Simple_repeat 1 68 0 439 239 67 118 chr9 67944257 67944495 -74326949 - MER102a DNA MER1_type -9 321 96 186 121 35 35 chr9 67944644 67944702 -74326742 + A-rich Low_complexity Low_complexity 4 61 0 276 346 50 0 chr9 67945083 67945184 -74326260 + L1ME1 LINE L1 5947 6052 -114 21 57 0 0 chr9 67945791 67945826 -74325618 + AT_rich Low_complexity Low_complexity 1 35 0 1035 249 122 10 chr9 67946273 67946682 -74324762 - L1ME LINE L1 -351 5811 5357 190 106 21 106 chr9 67946714 67946761 -74324683 - MIR SINE MIR -136 126 84 1287 166 0 18 chr9 67947410 67947627 -74323817 - AluJo SINE Alu -18 294 82 2141 142 53 44 chr9 67947742 67948193 -74323251 + L1MB8 LINE L1 5715 6169 -9 2288 108 3 0 chr9 67948455 67948762 -74322682 - AluSg SINE Alu -2 308 1 792 270 63 17 chr9 67948958 67949195 -74322249 - MIR SINE MIR 0 262 15 608 200 25 0 chr9 67949198 67949318 -74322126 - MER58 DNA MER1_type -4 2416 2294 884 199 102 61 chr9 67949339 67949609 -74321835 + LTR54B LTR ERV1 1 291 -207 1911 139 4 0 chr9 67949609 67949875 -74321569 + AluSx SINE Alu 1 267 -45 884 199 102 61 chr9 67949875 67949966 -74321478 + LTR54B LTR ERV1 291 377 -121 417 180 0 133 chr9 67949966 67950094 -74321350 + MER57A-int LTR ERV1 7425 7535 -2 975 156 55 92 chr9 67950095 67950406 -74321038 + MER57A LTR ERV1 1 403 0 378 213 71 50 chr9 67950406 67950510 -74320934 - MER58 DNA MER1_type -2276 144 38 24 0 0 0 chr9 67951190 67951214 -74320230 + AT_rich Low_complexity Low_complexity 1 24 0 820 206 28 22 chr9 67952078 67952258 -74319186 - MLT1A1 LTR MaLR 0 365 185 1760 177 0 0 chr9 67952397 67952679 -74318765 + AluJo SINE Alu 1 282 -30 272 172 0 16 chr9 67952687 67952751 -74318693 + (TA)n Simple_repeat Simple_repeat 1 63 0 226 276 26 0 chr9 67953098 67953174 -74318270 - L1MC/D LINE L1 -1873 5935 5858 2217 121 0 0 chr9 67953218 67953515 -74317929 - AluSq SINE Alu -16 297 1 22 35 0 0 chr9 67953788 67953817 -74317627 + AT_rich Low_complexity Low_complexity 1 29 0 2085 149 0 0 chr9 67954102 67954411 -74317033 + AluSq SINE Alu 1 309 -4 24 32 0 0 chr9 67954595 67954626 -74316818 + AT_rich Low_complexity Low_complexity 1 31 0 1977 115 142 16 chr9 67954727 67955050 -74316394 - THE1B LTR MaLR 0 364 1 11164 91 25 15 chr9 67955050 67956614 -74314830 - THE1B-int LTR MaLR 0 1580 1 2130 122 76 15 chr9 67956614 67956957 -74314487 - THE1B LTR MaLR 0 364 1 257 73 0 24 chr9 67957228 67957269 -74314175 + (TA)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr9 67957430 67957456 -74313988 + AT_rich Low_complexity Low_complexity 1 26 0 393 249 110 38 chr9 67957456 67957693 -74313751 + L1ME LINE L1 5546 5799 -322 2343 210 73 10 chr9 67958667 67959271 -74312173 - L1MC4a LINE L1 -5 7803 7162 187 240 48 67 chr9 67959810 67959914 -74311530 + MIR SINE MIR 70 171 -91 382 310 133 43 chr9 67960929 67961184 -74310260 + L2 LINE L2 2562 2839 -475 263 239 239 0 chr9 67961404 67961496 -74309948 + L2 LINE L2 3199 3312 -1 329 189 124 51 chr9 67961840 67962005 -74309439 + L1ME LINE L1 5638 5809 -361 21 0 0 0 chr9 67962365 67962386 -74309058 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr9 67962525 67962572 -74308872 + AT_rich Low_complexity Low_complexity 1 47 0 2224 104 7 3 chr9 67962952 67963259 -74308185 - AluSc SINE Alu -1 308 1 1958 87 0 0 chr9 67964199 67964452 -74306992 - AluY SINE Alu -18 293 41 274 203 68 14 chr9 67965473 67965547 -74305897 + L2 LINE L2 3232 3309 -4 1472 145 4 0 chr9 67966573 67966801 -74304643 + MER2 DNA MER2_type 1 229 -116 1902 131 4 4 chr9 67967652 67967927 -74303517 + AluSx SINE Alu 1 275 -37 372 119 0 0 chr9 67967931 67967990 -74303454 + (CA)n Simple_repeat Simple_repeat 2 60 0 730 159 30 8 chr9 67968052 67968184 -74303260 + MER5A DNA MER1_type 32 166 -23 691 183 0 0 chr9 67968188 67968303 -74303141 - Tigger1 DNA MER2_type 0 2418 2304 897 153 108 13 chr9 67968307 67968464 -74302980 + FRAM SINE Alu 1 169 -7 12936 93 37 8 chr9 67968464 67969770 -74301674 - Tigger1 DNA MER2_type -109 2309 929 2102 96 4 4 chr9 67969770 67970080 -74301364 + AluSg SINE Alu 1 310 0 12936 93 37 8 chr9 67970080 67970639 -74300805 - Tigger1 DNA MER2_type -1489 929 388 762 234 101 54 chr9 67970642 67970958 -74300486 - HAL1b LINE L1 -579 769 439 722 249 144 76 chr9 67970957 67971483 -74299961 - HAL1b LINE L1 -710 638 77 * 189 132 0 0 chr9 67972510 67972548 -74298896 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 1336 164 28 5 chr9 67972582 67972795 -74298649 - MER20 DNA MER1_type 0 219 2 2292 106 0 28 chr9 67974377 67974698 -74296746 - AluSx SINE Alu 0 312 1 31 44 0 0 chr9 67975612 67975657 -74295787 + AT_rich Low_complexity Low_complexity 1 45 0 737 102 0 71 chr9 67976339 67976466 -74294978 + L1PA11 LINE L1 6052 6169 -5 292 57 0 0 chr9 67976522 67976557 -74294887 + U2 snRNA snRNA 1 35 -153 2250 111 3 0 chr9 67976868 67977165 -74294279 - AluSx SINE Alu -14 298 1 1416 114 126 15 chr9 67978778 67979049 -74292395 - L1MA9 LINE L1 -5 6307 6007 27 0 0 0 chr9 67979224 67979251 -74292193 + AT_rich Low_complexity Low_complexity 1 27 0 281 164 91 0 chr9 67980116 67980171 -74291273 - L2 LINE L2 -4 3309 3250 339 25 0 0 chr9 67982176 67982216 -74289228 + (TA)n Simple_repeat Simple_repeat 1 40 0 2078 77 55 4 chr9 67982235 67982388 -74289056 - AluSx SINE Alu -24 288 113 311 0 26 0 chr9 67982388 67982427 -74289017 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2078 77 55 4 chr9 67982427 67982546 -74288898 - AluSx SINE Alu -199 113 2 849 176 0 0 chr9 67982937 67983062 -74288382 - FLAM_A SINE Alu -8 125 1 21 0 0 0 chr9 67984068 67984089 -74287355 + AT_rich Low_complexity Low_complexity 1 21 0 569 246 181 0 chr9 67984757 67984972 -74286472 + MIR SINE MIR 9 262 0 360 0 0 0 chr9 67986904 67986944 -74284500 + (T)n Simple_repeat Simple_repeat 1 40 0 2552 68 0 0 chr9 67987956 67988265 -74283179 + AluY SINE Alu 1 309 -2 23 33 0 0 chr9 67988316 67988346 -74283098 + AT_rich Low_complexity Low_complexity 1 30 0 194 262 206 40 chr9 67988644 67988770 -74282674 - L2 LINE L2 -4 3268 3122 206 269 65 65 chr9 67988877 67988985 -74282459 - L2 LINE L2 -217 3055 2948 182 328 144 8 chr9 67989051 67989176 -74282268 - L2 LINE L2 -456 2858 2717 192 77 0 0 chr9 67989782 67989808 -74281636 + (T)n Simple_repeat Simple_repeat 1 26 0 236 54 54 0 chr9 67990300 67990337 -74281107 + T-rich Low_complexity Low_complexity 2 40 0 1739 121 12 4 chr9 67990359 67990608 -74280836 - AluSx SINE Alu -27 285 35 2319 78 10 20 chr9 67991190 67991496 -74279948 - AluSc SINE Alu -6 303 1 25 0 0 0 chr9 67992639 67992664 -74278780 + AT_rich Low_complexity Low_complexity 1 25 0 34029 34 7 2 chr9 67992681 67997544 -74273900 - L1PA3 LINE L1 0 6155 1267 225 0 0 0 chr9 67998633 67998658 -74272786 + (TA)n Simple_repeat Simple_repeat 1 25 0 210 299 43 34 chr9 68000346 68000463 -74270981 - MIR SINE MIR -70 192 75 770 238 67 62 chr9 68002426 68002558 -74268886 - L1MC5 LINE L1 -135 7826 7696 782 191 0 0 chr9 68002558 68002684 -74268760 + FLAM_C SINE Alu 1 126 -7 770 238 67 62 chr9 68002684 68002967 -74268477 - L1MC5 LINE L1 -265 7696 7409 21 82 0 0 chr9 68003196 68003245 -74268199 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr9 68004197 68004232 -74267212 + AT_rich Low_complexity Low_complexity 1 35 0 961 290 12 8 chr9 68004306 68004565 -74266879 + MIR SINE MIR 3 262 0 447 328 54 30 chr9 68005019 68005315 -74266129 - L2 LINE L2 -1 3271 2969 2415 177 105 8 chr9 68005514 68009756 -74261688 - SATR1 Satellite Satellite 0 4652 1 247 229 11 56 chr9 68009894 68010073 -74261371 + (TAA)n Simple_repeat Simple_repeat 1 171 0 1818 205 115 65 chr9 68010171 68011393 -74260051 + SATR1 Satellite Satellite 1 1283 -8 2293 183 96 22 chr9 68011430 68014124 -74257320 - SATR1 Satellite Satellite -2 2894 1 413 228 6 31 chr9 68014125 68014287 -74257157 + (TAA)n Simple_repeat Simple_repeat 3 160 0 204 221 11 63 chr9 68014321 68014511 -74256933 + (TAA)n Simple_repeat Simple_repeat 1 180 0 1889 207 124 62 chr9 68014537 68015675 -74255769 + SATR1 Satellite Satellite 1 1208 -87 3817 128 5 13 chr9 68016600 68017202 -74254242 - HERVE LTR ERV1 -3967 3846 3250 306 301 82 92 chr9 68017365 68017647 -74253797 + L1MDa LINE L1 402 680 -5860 1449 232 85 61 chr9 68018016 68018605 -74252839 + SATR1 Satellite Satellite 1 575 -1586 3037 210 19 80 chr9 68018605 68019637 -74251807 - LTR5 LTR ERVK 0 969 1 1449 232 85 61 chr9 68019637 68020120 -74251324 + SATR1 Satellite Satellite 575 2153 -8 289 164 0 33 chr9 68020198 68020259 -74251185 - LTR5 LTR ERVK -910 59 1 820 236 68 39 chr9 68020259 68020625 -74250819 + SATR1 Satellite Satellite 1 376 -131 1963 127 30 3 chr9 68020751 68021051 -74250393 - AluSc SINE Alu -1 308 1 1448 265 9 58 chr9 68021052 68021501 -74249943 - L1MEc LINE L1 -5932 464 38 706 226 8 73 chr9 68021502 68021736 -74249708 + MER20B DNA MER1_type 563 781 -2 633 205 16 0 chr9 68021748 68021870 -74249574 + MER94 DNA DNA 1 124 -10 1015 243 5 0 chr9 68022347 68022561 -74248883 - MIR SINE MIR 0 262 48 419 284 97 61 chr9 68022871 68023283 -74248161 - L2 LINE L2 -825 2489 2063 1857 190 79 41 chr9 68023416 68023859 -74247585 - MLT1C LTR MaLR 0 467 8 1466 160 4 8 chr9 68024015 68024252 -74247192 - MER65A LTR ERV1 -169 276 41 1795 149 23 32 chr9 68024870 68025178 -74246266 + AluJb SINE Alu 1 305 -7 336 261 134 15 chr9 68026126 68026260 -74245184 - MIR SINE MIR -3 259 110 261 282 0 14 chr9 68026947 68027018 -74244426 + MIR3 SINE MIR 112 181 -27 1425 131 68 0 chr9 68027021 68027242 -74244202 - AluJb SINE Alu -10 302 67 1134 248 121 22 chr9 68027710 68028073 -74243371 - L2 LINE L2 -5 3308 2910 464 271 8 0 chr9 68028330 68028448 -74242996 + L2 LINE L2 3180 3298 -15 180 0 0 0 chr9 68028454 68028474 -74242970 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 716 105 0 0 chr9 68028476 68028571 -74242873 - AluSx SINE Alu -24 285 191 1149 99 0 0 chr9 68028572 68028713 -74242731 - AluSx SINE Alu -171 141 1 182 328 49 0 chr9 68028888 68028904 -74242540 + L3 LINE CR1 1508 1522 -55 308 266 80 43 chr9 68028904 68029092 -74242352 - MER117 DNA MER1_type -1 196 2 182 328 49 0 chr9 68029092 68029136 -74242308 + L3 LINE CR1 1522 1571 -6 1745 149 4 11 chr9 68029518 68029787 -74241657 + AluJb SINE Alu 1 267 -45 183 42 0 0 chr9 68029810 68029834 -74241610 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 557 253 47 25 chr9 68029953 68030260 -74241184 + MLT1I LTR MaLR 61 408 -1 1028 161 16 115 chr9 68030297 68030458 -74240986 - MER20B DNA MER1_type 0 219 88 1745 137 7 4 chr9 68030458 68030728 -74240716 + L1MB3 LINE L1 5906 6176 -7 1028 161 16 115 chr9 68030728 68030809 -74240635 - MER20B DNA MER1_type -131 88 1 873 126 0 30 chr9 68032786 68032921 -74238523 + FLAM_C SINE Alu 1 131 -2 209 268 0 0 chr9 68033153 68033224 -74238220 + (TAA)n Simple_repeat Simple_repeat 3 73 0 728 285 20 0 chr9 68033230 68033430 -74238014 - MIR SINE MIR 0 262 59 355 239 0 0 chr9 68033994 68034065 -74237379 + MIR SINE MIR 80 150 -112 347 183 12 0 chr9 68034068 68034150 -74237294 + (TA)n Simple_repeat Simple_repeat 1 83 0 573 138 145 14 chr9 68034420 68034558 -74236886 + MER103 DNA DNA 3 158 -8 413 125 0 0 chr9 68035009 68035065 -74236379 + Alu SINE Alu 238 293 -17 336 258 75 0 chr9 68035086 68035179 -74236265 + MER103 DNA DNA 67 166 0 489 163 163 8 chr9 68035578 68035701 -74235743 - MIR SINE MIR -3 259 118 1478 145 99 0 chr9 68036487 68036729 -74234715 + AluJb SINE Alu 1 266 -46 1791 141 29 13 chr9 68036827 68037140 -74234304 - L1MA7 LINE L1 -8 6283 5966 213 39 0 0 chr9 68038013 68038039 -74233405 + (A)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr9 68038173 68038198 -74233246 + (CA)n Simple_repeat Simple_repeat 1 25 0 509 250 18 0 chr9 68039833 68039945 -74231499 + MER99 DNA DNA 1 114 -714 2593 188 93 0 chr9 68040282 68040797 -74230647 + MER99 DNA DNA 266 828 0 292 232 105 32 chr9 68041225 68041320 -74230124 + LTR67 LTR ERVL 456 557 0 438 304 8 0 chr9 68041628 68041753 -74229691 - MER94 DNA DNA -6 128 3 429 285 23 31 chr9 68042281 68042315 -74229129 - MIR SINE MIR -81 181 148 2225 148 54 11 chr9 68042315 68042666 -74228778 - MER47A DNA MER2_type 0 366 1 429 285 23 31 chr9 68042666 68042761 -74228683 - MIR SINE MIR -114 148 53 4721 168 53 54 chr9 68043488 68044436 -74227008 + L1 LINE L1 3287 4235 -1911 1204 129 5 58 chr9 68044436 68044653 -74226791 + L1PA16 LINE L1 5955 6166 0 4721 168 53 54 chr9 68044653 68044737 -74226707 + L1 LINE L1 4235 4318 -1828 21 36 0 0 chr9 68046343 68046371 -74225073 + AT_rich Low_complexity Low_complexity 1 28 0 2167 111 0 0 chr9 68047499 68047787 -74223657 + AluSx SINE Alu 1 288 -24 300 283 62 41 chr9 68048206 68048351 -74223093 - MIR3 SINE MIR -1 207 60 21 0 0 0 chr9 68048781 68048802 -74222642 + AT_rich Low_complexity Low_complexity 1 21 0 630 217 49 5 chr9 68049207 68049391 -74222053 + MER113 DNA MER1_type? 1 192 -329 565 207 173 0 chr9 68049668 68049818 -74221626 + MER5A DNA MER1_type 8 183 -6 681 225 7 7 chr9 68049832 68049974 -74221470 - MER5B DNA MER1_type 0 178 37 1233 160 197 37 chr9 68049992 68050267 -74221177 + AluJb SINE Alu 1 314 0 877 233 22 0 chr9 68050331 68050511 -74220933 - MER5A DNA MER1_type -1 188 5 899 141 55 12 chr9 68050671 68050834 -74220610 - MER65A LTR ERV1 0 445 276 468 0 0 0 chr9 68051279 68051331 -74220113 + (CA)n Simple_repeat Simple_repeat 2 53 0 1413 204 40 23 chr9 68053195 68053499 -74217945 - AluJb SINE Alu -3 309 1 69 59 0 0 chr9 68053650 68053768 -74217676 + AT_rich Low_complexity Low_complexity 1 118 0 25 0 0 0 chr9 68053936 68053961 -74217483 + AT_rich Low_complexity Low_complexity 1 25 0 588 14 0 0 chr9 68054276 68054345 -74217099 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 441 0 0 0 chr9 68054586 68054635 -74216809 + (CA)n Simple_repeat Simple_repeat 2 50 0 27 0 0 0 chr9 68054812 68054839 -74216605 + AT_rich Low_complexity Low_complexity 1 27 0 270 292 0 14 chr9 68054843 68054915 -74216529 - L2 LINE L2 -528 2786 2716 1055 264 90 38 chr9 68054939 68055535 -74215909 + L2 LINE L2 2681 3313 0 372 296 68 34 chr9 68055571 68055747 -74215697 - L2 LINE L2 -639 2675 2494 1718 234 60 1 chr9 68055764 68056213 -74215231 + MLT1F LTR MaLR 1 509 -58 437 232 187 0 chr9 68056218 68056373 -74215071 + L2 LINE L2 3130 3313 0 457 107 13 0 chr9 68056461 68056536 -74214908 + MLT1F LTR MaLR 282 357 -185 331 135 0 0 chr9 68056541 68056593 -74214851 + MLT1F LTR MaLR 490 541 -1 247 313 48 0 chr9 68056602 68056685 -74214759 - L2 LINE L2 -833 2481 2395 201 316 53 0 chr9 68056767 68056862 -74214582 - L2 LINE L2 -6 3307 3208 630 247 59 120 chr9 68057026 68057434 -74214010 + MLT1J2 LTR MaLR 59 435 -15 850 163 56 12 chr9 68057909 68058069 -74213375 + ERVL LTR ERVL 4000 4166 -1598 2687 156 15 0 chr9 68058069 68058479 -74212965 + MSTB LTR MaLR 1 416 -10 1512 156 8 0 chr9 68058490 68058727 -74212717 + ERVL LTR ERVL 4163 4401 -1363 984 224 46 12 chr9 68058727 68058986 -74212458 + MLT1C LTR MaLR 200 467 0 911 255 80 11 chr9 68059010 68059273 -74212171 - MLT1C LTR MaLR 0 467 187 188 315 0 0 chr9 68059452 68059506 -74211938 + MIR SINE MIR 87 140 -68 290 316 0 0 chr9 68061807 68061886 -74209558 + MIR SINE MIR 63 141 -121 356 210 80 0 chr9 68061965 68062065 -74209379 - L1ME4a LINE L1 -240 5881 5774 1757 176 7 7 chr9 68062166 68062472 -74208972 + AluJo SINE Alu 1 306 -6 217 291 0 0 chr9 68063982 68064037 -74207407 + (TG)n Simple_repeat Simple_repeat 1 55 0 485 256 13 58 chr9 68064289 68064445 -74206999 - MIR SINE MIR -65 197 49 747 251 145 44 chr9 68064570 68065170 -74206274 - L1ME4a LINE L1 -97 6024 5362 23 0 0 0 chr9 68065400 68065423 -74206021 + AT_rich Low_complexity Low_complexity 1 23 0 318 182 0 45 chr9 68067357 68067423 -74204021 + MER4B LTR ERV1 1 63 -547 1195 142 34 34 chr9 68067686 68067890 -74203554 - MER3 DNA MER1_type -4 205 2 2300 115 0 3 chr9 68067941 68068254 -74203190 + AluSx SINE Alu 1 312 0 584 265 50 34 chr9 68068801 68069257 -74202187 + L1MC4 LINE L1 6960 7416 -626 256 264 42 0 chr9 68069234 68069306 -74202138 + L1MC5 LINE L1 7257 7331 -630 * 2020 192 3 3 chr9 68069306 68069665 -74201779 + MLT1A1 LTR MaLR 1 359 -6 324 269 59 72 chr9 68069666 68069933 -74201511 + L1MC4 LINE L1 7333 7700 -342 1589 159 12 8 chr9 68069933 68070185 -74201259 + AluJo SINE Alu 41 293 -19 324 269 59 72 chr9 68070185 68070339 -74201105 + L1MC4 LINE L1 7700 7854 -188 327 289 91 91 chr9 68070642 68071136 -74200308 + MLT1K LTR MaLR 93 586 -2 2182 115 3 7 chr9 68071515 68071819 -74199625 + AluSx SINE Alu 1 303 -9 713 230 69 95 chr9 68072297 68072709 -74198735 - MLT1L LTR MaLR -33 565 111 2129 136 3 0 chr9 68072907 68073314 -74198130 - AluSx SINE Alu 0 408 1 242 235 0 0 chr9 68073314 68073365 -74198079 - MER5A DNA MER1_type -113 76 26 739 261 12 0 chr9 68073395 68073556 -74197888 - MER5B DNA MER1_type -14 164 2 186 250 60 90 chr9 68074557 68074657 -74196787 - MIR SINE MIR -89 119 23 266 313 12 0 chr9 68074758 68074838 -74196606 - MIR SINE MIR -61 147 67 389 272 74 36 chr9 68075056 68075365 -74196079 - L1MC5 LINE L1 -140 7821 7501 8814 244 50 9 chr9 68075549 68077722 -74193722 + L1PBa LINE L1 2719 5054 -1808 276 77 0 0 chr9 68077722 68077761 -74193683 + (CA)n Simple_repeat Simple_repeat 2 40 0 8814 244 50 9 chr9 68077761 68078634 -74192810 + L1PBa LINE L1 5054 5890 -972 28 29 0 0 chr9 68078737 68078772 -74192672 + AT_rich Low_complexity Low_complexity 1 35 0 1330 168 69 0 chr9 68079316 68079619 -74191825 - MER33 DNA MER1_type 0 324 1 189 0 0 0 chr9 68079829 68079850 -74191594 + (A)n Simple_repeat Simple_repeat 1 21 0 305 269 25 67 chr9 68079962 68080081 -74191363 - MIR SINE MIR -62 146 33 407 75 30 0 chr9 68082324 68082391 -74189053 - L1MB4 LINE L1 0 6180 6112 3059 238 124 41 chr9 68083939 68085320 -74186124 - HAL1 LINE L1 -19 2488 993 3281 186 30 14 chr9 68085330 68086024 -74185420 - L1ME1 LINE L1 -5 6161 5457 788 247 57 4 chr9 68086027 68086290 -74185154 - HAL1 LINE L1 -1507 1000 724 676 339 25 7 chr9 68086380 68086660 -74184784 - MLT1K LTR MaLR -302 286 2 289 319 57 93 chr9 68086740 68087126 -74184318 + L2 LINE L2 2892 3263 -9 279 180 0 0 chr9 68087420 68087470 -74183974 + L2 LINE L2 3255 3304 -9 23 0 0 0 chr9 68088031 68088054 -74183390 + AT_rich Low_complexity Low_complexity 1 23 0 982 260 45 4 chr9 68088684 68088926 -74182518 + MIR SINE MIR 1 252 -10 188 268 113 14 chr9 68089040 68089111 -74182333 + MIR SINE MIR 133 210 -52 259 145 72 0 chr9 68089380 68089449 -74181995 + (TA)n Simple_repeat Simple_repeat 1 74 0 948 200 0 12 chr9 68089552 68089722 -74181722 + AluJo SINE Alu 1 168 -144 2242 228 74 3 chr9 68089723 68090342 -74181102 + L1ME2 LINE L1 5491 6153 -11 1130 139 0 44 chr9 68090403 68090583 -74180861 + AluSp SINE Alu 131 302 -11 1797 183 7 10 chr9 68090710 68091010 -74180434 - AluJo SINE Alu -13 299 1 2316 206 103 39 chr9 68091011 68091862 -74179582 - L1ME1 LINE L1 -945 5201 4296 535 267 6 42 chr9 68092230 68092395 -74179049 - MIR SINE MIR -64 198 40 254 352 95 57 chr9 68093657 68093972 -74177472 - L2 LINE L2 0 3272 2946 538 253 49 48 chr9 68094388 68094799 -74176645 - LTR33 LTR ERVL -4 517 38 431 290 26 61 chr9 68095400 68095803 -74175641 - L1MC/D LINE L1 -843 5516 5254 260 399 110 22 chr9 68095899 68096300 -74175144 + L2 LINE L2 2315 2750 -564 184 307 104 50 chr9 68096392 68096594 -74174850 + L2 LINE L2 2835 3047 -225 605 188 6 111 chr9 68097884 68097974 -74173470 + L1ME1 LINE L1 6000 6098 -68 315 0 0 0 chr9 68097974 68098009 -74173435 + (TG)n Simple_repeat Simple_repeat 2 36 0 605 188 6 111 chr9 68098009 68098059 -74173385 + L1ME1 LINE L1 6098 6120 -46 2310 96 0 3 chr9 68098059 68098360 -74173084 + AluSx SINE Alu 1 300 -12 605 188 6 111 chr9 68098360 68098399 -74173045 + L1ME1 LINE L1 6120 6161 -5 2736 107 5 2 chr9 68099201 68099594 -74171850 + MER1A DNA MER1_type 135 528 -1 351 254 107 8 chr9 68099643 68099765 -74171679 - MIR SINE MIR -96 166 33 183 139 0 0 chr9 68099840 68099876 -74171568 + (TGGGGG)n Simple_repeat Simple_repeat 6 41 0 1976 137 0 7 chr9 68100200 68100507 -74170937 - AluSx SINE Alu 0 305 1 297 191 38 30 chr9 68101670 68101801 -74169643 + CT-rich Low_complexity Low_complexity 1 132 0 324 302 0 0 chr9 68102221 68102307 -74169137 + MIR SINE MIR 28 113 -149 2798 108 47 0 chr9 68102311 68102720 -74168724 - MSTC LTR MaLR 0 428 1 206 217 169 24 chr9 68102721 68102749 -74168695 + MIR SINE MIR 168 191 -71 606 28 0 0 chr9 68102749 68102821 -74168623 + (TA)n Simple_repeat Simple_repeat 1 72 0 206 217 169 24 chr9 68102821 68102875 -74168569 + MIR SINE MIR 191 262 0 1701 159 18 18 chr9 68103245 68103521 -74167923 - AluJo SINE Alu -36 276 1 5781 30 0 1 chr9 68104447 68105181 -74166263 - L1PA3 LINE L1 -777 5369 4637 6962 16 1 0 chr9 68105181 68105975 -74165469 + L1PA3 LINE L1 5353 6154 -1 929 264 23 48 chr9 68106073 68106471 -74164973 - MLT1J LTR MaLR -115 396 9 248 70 23 0 chr9 68106633 68106676 -74164768 + (GGA)n Simple_repeat Simple_repeat 2 45 0 245 226 97 0 chr9 68106721 68106783 -74164661 - MIR SINE MIR -87 175 108 466 272 153 35 chr9 68106871 68107184 -74164260 - MLT1L LTR MaLR -15 600 251 242 227 15 15 chr9 68107233 68107299 -74164145 - MLT1L LTR MaLR -532 83 18 647 112 0 86 chr9 68107345 68107461 -74163983 + FLAM_A SINE Alu 16 121 -21 306 258 11 11 chr9 68107465 68107554 -74163890 - L1MC4 LINE L1 -1339 6703 6615 * 310 264 11 22 chr9 68107503 68107594 -74163850 + L1MC4 LINE L1 6614 6703 -1339 263 348 128 64 chr9 68107709 68107913 -74163531 - L2 LINE L2 -10 3262 3046 192 351 85 0 chr9 68107969 68108063 -74163381 + L2 LINE L2 3189 3290 -23 2682 118 42 24 chr9 68109983 68110407 -74161037 + MSTB1 LTR MaLR 1 432 0 208 366 38 79 chr9 68110656 68110921 -74160523 - L2 LINE L2 -25 3247 2994 541 0 14 14 chr9 68111874 68111944 -74159500 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 912 224 39 60 chr9 68112411 68112692 -74158752 + LTR16C LTR ERVL 216 490 -1 560 219 48 80 chr9 68117405 68117546 -74153898 + LTR33A LTR ERVL 340 476 -47 2154 106 3 0 chr9 68117546 68117857 -74153587 + AluSx SINE Alu 1 312 0 560 219 48 80 chr9 68117857 68117901 -74153543 + LTR33A LTR ERVL 476 520 -3 22 56 0 0 chr9 68118123 68118159 -74153285 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr9 68118179 68118222 -74153222 + AT_rich Low_complexity Low_complexity 1 43 0 254 0 83 0 chr9 68118541 68118577 -74152867 + T-rich Low_complexity Low_complexity 2 40 0 832 112 40 0 chr9 68118577 68118702 -74152742 - AluJb SINE Alu -182 130 1 5044 86 1 3 chr9 68118841 68119538 -74151906 - L1PB1 LINE L1 -3 6148 5453 525 80 0 0 chr9 68119740 68119815 -74151629 + (TC)n Simple_repeat Simple_repeat 2 76 0 250 306 35 0 chr9 68120213 68120298 -74151146 + L3 LINE CR1 1143 1230 -347 1859 187 3 7 chr9 68120337 68120695 -74150749 - MLT1A1 LTR MaLR 0 365 1 406 214 84 13 chr9 68120741 68120895 -74150549 + MER103 DNA DNA 2 166 0 293 259 14 116 chr9 68122320 68122467 -74148977 + MIR SINE MIR 86 217 -45 371 237 19 26 chr9 68122591 68122707 -74148737 - L1ME LINE L1 -330 5791 5677 22 0 0 0 chr9 68122717 68122739 -74148705 + AT_rich Low_complexity Low_complexity 1 22 0 189 330 147 9 chr9 68122981 68123090 -74148354 + L2 LINE L2 3144 3267 -5 193 210 145 16 chr9 68123151 68123213 -74148231 - L2 LINE L2 -3 3310 3241 434 300 0 0 chr9 68125040 68125140 -74146304 + MIR SINE MIR 48 147 -115 271 264 35 11 chr9 68125245 68125332 -74146112 + MIR SINE MIR 172 260 -2 303 327 74 12 chr9 68125795 68125957 -74145487 - L3b LINE CR1 -90 1493 1322 1964 150 3 13 chr9 68128298 68128611 -74142833 - AluSx SINE Alu -2 310 1 404 269 46 62 chr9 68128626 68128724 -74142720 - L1ME4a LINE L1 -194 5927 5829 2187 109 0 3 chr9 68128724 68129017 -74142427 - AluSx SINE Alu -20 292 1 404 269 46 62 chr9 68129017 68129241 -74142203 - L1ME4a LINE L1 -292 5829 5610 188 296 217 26 chr9 68129311 68129426 -74142018 + MIR3 SINE MIR 38 174 -34 2378 109 0 0 chr9 68130145 68130456 -74140988 + AluSx SINE Alu 1 311 -1 1775 134 69 0 chr9 68130635 68130911 -74140533 + AluSx SINE Alu 1 295 -17 21 71 0 0 chr9 68131008 68131050 -74140394 + AT_rich Low_complexity Low_complexity 1 42 0 570 276 92 81 chr9 68131122 68131358 -74140086 + L2 LINE L2 2922 3165 -148 2498 198 13 13 chr9 68131358 68131914 -74139530 - L1MB8 LINE L1 -2 6176 5621 570 276 92 81 chr9 68131914 68132036 -74139408 + L2 LINE L2 3165 3284 -29 237 277 196 31 chr9 68132871 68133003 -74138441 - MIR SINE MIR -65 143 1 288 70 0 0 chr9 68133677 68133720 -74137724 + (CA)n Simple_repeat Simple_repeat 2 44 0 649 260 21 10 chr9 68133825 68134017 -74137427 + Charlie8 DNA MER1_type 81 274 -2143 2262 101 7 3 chr9 68134116 68134424 -74137020 + AluSx SINE Alu 1 309 -3 307 340 0 42 chr9 68134480 68134624 -74136820 - MER5A DNA MER1_type -3 186 49 249 292 35 49 chr9 68134629 68134773 -74136671 + L1ME1 LINE L1 6 147 -5923 1626 195 0 11 chr9 68135191 68135478 -74135966 + AluJb SINE Alu 1 284 -28 350 131 40 0 chr9 68135478 68135577 -74135867 + (TA)n Simple_repeat Simple_repeat 2 104 0 209 135 27 0 chr9 68135613 68135650 -74135794 + (TA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr9 68135725 68135747 -74135697 + AT_rich Low_complexity Low_complexity 1 22 0 392 191 11 0 chr9 68135756 68135845 -74135599 + (TA)n Simple_repeat Simple_repeat 2 91 0 6221 216 73 52 chr9 68136111 68138391 -74133053 + L1ME1 LINE L1 2347 4685 -1395 1722 118 87 0 chr9 68138391 68138645 -74132799 - AluSq SINE Alu -9 304 29 6221 216 73 52 chr9 68138645 68138808 -74132636 + L1ME1 LINE L1 4685 4843 -1237 2843 221 75 10 chr9 68138820 68139630 -74131814 + L1ME1 LINE L1 5229 6091 -9 183 298 0 0 chr9 68139630 68139687 -74131757 + MER5B DNA MER1_type 121 177 -1 213 121 0 0 chr9 68140155 68140188 -74131256 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 346 301 30 60 chr9 68140987 68141153 -74130291 + MIR3 SINE MIR 17 177 -31 500 223 11 128 chr9 68141266 68141465 -74129979 - MER5A DNA MER1_type 0 189 5 453 250 194 13 chr9 68143523 68143727 -74127717 + MIR SINE MIR 24 262 0 389 355 14 12 chr9 68143883 68144033 -74127411 + MIR SINE MIR 2 153 -55 188 305 147 11 chr9 68144796 68144891 -74126553 - L2 LINE L2 -5 3267 3160 2085 157 6 3 chr9 68145037 68145387 -74126057 - MLT1A1 LTR MaLR -13 352 2 270 304 6 82 chr9 68145719 68145890 -74125554 - MIR3 SINE MIR -45 163 6 267 302 23 47 chr9 68145880 68146009 -74125435 - MIR SINE MIR -56 152 27 * 242 73 24 0 chr9 68146357 68146398 -74125046 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 280 330 10 19 chr9 68146408 68146511 -74124933 + MER5A DNA MER1_type 63 164 -25 189 175 0 0 chr9 68147197 68147237 -74124207 + (CA)n Simple_repeat Simple_repeat 1 40 0 465 259 0 79 chr9 68147918 68148057 -74123387 + MER91B DNA MER1_type 3 130 -60 1656 153 33 18 chr9 68149457 68149732 -74121712 - AluJo SINE Alu -19 293 15 437 318 101 10 chr9 68150077 68150373 -74121071 + LTR33 LTR ERVL 1 323 -198 363 220 34 25 chr9 68150399 68150517 -74120927 + LTR33 LTR ERVL 403 521 0 339 283 82 0 chr9 68150705 68150858 -74120586 - MIR SINE MIR -65 143 25 319 304 56 60 chr9 68152080 68152330 -74119114 - L1ME LINE L1 -377 5793 5545 192 77 0 0 chr9 68152391 68152417 -74119027 + (T)n Simple_repeat Simple_repeat 1 26 0 1980 98 3 32 chr9 68152438 68152723 -74118721 - AluY SINE Alu -30 281 5 2221 130 0 3 chr9 68152728 68153035 -74118409 - AluSx SINE Alu -6 306 1 322 222 171 17 chr9 68153040 68153157 -74118287 - L1ME LINE L1 -680 5482 5348 262 274 53 16 chr9 68153162 68153352 -74118092 - L1ME LINE L1 -832 5314 5118 183 80 0 0 chr9 68153958 68153983 -74117461 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 1329 244 29 21 chr9 68155310 68155695 -74115749 - L1ME3A LINE L1 -6 6164 5777 708 227 58 54 chr9 68155717 68156072 -74115372 - L1ME3A LINE L1 -602 5560 5208 288 280 90 10 chr9 68156376 68156476 -74114968 - L2 LINE L2 -10 3262 3155 803 234 81 45 chr9 68157243 68157551 -74113893 - MLT1J1 LTR MaLR -127 319 1 888 191 87 90 chr9 68157556 68157906 -74113538 + MLT1A1 LTR MaLR 1 353 -12 290 374 17 9 chr9 68159606 68159721 -74111723 + MIR3 SINE MIR 3 118 -90 356 262 0 0 chr9 68159721 68159824 -74111620 - L1ME3A LINE L1 -198 5972 5870 500 159 0 11 chr9 68159824 68159912 -74111532 - Tigger5 DNA MER2_type 0 2323 2237 456 179 12 0 chr9 68159923 68160007 -74111437 + Tigger5 DNA MER2_type 1 85 -2238 320 235 0 0 chr9 68160031 68160099 -74111345 - Tigger5 DNA MER2_type -5 2318 2251 257 226 0 0 chr9 68160070 68160123 -74111321 - Tigger5 DNA MER2_type -2270 53 1 * 504 227 117 0 chr9 68160125 68160288 -74111156 - L1ME3A LINE L1 -301 5869 5688 1199 239 48 48 chr9 68160319 68160713 -74110731 - LTR16A LTR ERVL -2 448 55 257 184 0 0 chr9 68160817 68160866 -74110578 - L1ME3A LINE L1 -566 5604 5556 471 272 23 68 chr9 68161539 68161804 -74109640 - L1MC5 LINE L1 -48 7913 7661 1969 250 37 45 chr9 68161815 68163078 -74108366 - L1MCc LINE L1 -4818 2123 654 1196 244 81 12 chr9 68163242 68163648 -74107796 - L1MCc LINE L1 -5983 440 7 438 193 55 21 chr9 68163708 68163853 -74107591 - L1MC5 LINE L1 -385 7576 7427 23 54 0 0 chr9 68163974 68164011 -74107433 + AT_rich Low_complexity Low_complexity 1 37 0 1478 126 8 0 chr9 68164146 68164384 -74107060 - L1PA14 LINE L1 -11 6150 5911 266 274 0 60 chr9 68164646 68164730 -74106714 - L2 LINE L2 -8 3264 3186 408 200 55 21 chr9 68164788 68164933 -74106511 - L1MC5 LINE L1 -385 7576 7427 1831 151 7 3 chr9 68165041 68165326 -74106118 - AluSx SINE Alu -26 286 1 214 354 192 0 chr9 68165774 68165873 -74105571 + L2 LINE L2 3154 3271 -1 239 276 13 0 chr9 68165880 68165956 -74105488 + GA-rich Low_complexity Low_complexity 3 79 0 25 51 0 0 chr9 68166137 68166176 -74105268 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr9 68166263 68166289 -74105155 + AT_rich Low_complexity Low_complexity 1 26 0 596 168 0 0 chr9 68167641 68167742 -74103702 + FLAM_A SINE Alu 34 134 -8 2191 112 3 0 chr9 68167751 68168036 -74103408 + AluSx SINE Alu 6 291 -21 352 311 96 34 chr9 68168203 68168412 -74103032 - MIR SINE MIR -18 244 23 291 339 108 27 chr9 68168511 68168697 -74102747 + MIR3 SINE MIR 2 202 -6 336 252 155 10 chr9 68168762 68168865 -74102579 - L2 LINE L2 0 3272 3155 216 179 0 0 chr9 68169186 68169225 -74102219 + (ATCG)n Simple_repeat Simple_repeat 2 40 0 463 299 185 0 chr9 68169526 68169710 -74101734 + MIR SINE MIR 12 229 -33 594 215 0 0 chr9 68169807 68169914 -74101530 + MER81 DNA DNA 6 112 -2 744 263 0 45 chr9 68170156 68170335 -74101109 - MER5B DNA MER1_type -1 177 7 590 181 36 0 chr9 68170931 68171069 -74100375 + L1MC1 LINE L1 5802 5944 -389 2112 109 0 64 chr9 68171114 68171443 -74100001 - AluSq SINE Alu -5 308 1 237 225 115 60 chr9 68171494 68171676 -74099768 - L1ME4a LINE L1 -57 6064 5873 644 138 95 0 chr9 68171692 68171808 -74099636 + L1PB4 LINE L1 6027 6153 -3 1337 146 0 15 chr9 68171931 68172137 -74099307 + AluJb SINE Alu 87 289 -23 227 208 13 65 chr9 68172209 68172286 -74099158 - L1ME4a LINE L1 -482 5639 5567 300 304 82 29 chr9 68172293 68172464 -74098980 - L1ME4a LINE L1 -2336 5472 5293 491 275 214 6 chr9 68173851 68174029 -74097415 - MIR SINE MIR -31 231 17 260 256 12 37 chr9 68174075 68174157 -74097287 - MIR SINE MIR -116 146 67 376 319 59 7 chr9 68174432 68174567 -74096877 + L2 LINE L2 2918 3059 -254 1097 229 80 43 chr9 68174567 68174989 -74096455 - MLT1C LTR MaLR 0 467 19 542 248 48 53 chr9 68175054 68175260 -74096184 + L2 LINE L2 3109 3313 0 2612 10 38 0 chr9 68175762 68176051 -74095393 + AluYa5 SINE Alu 1 300 -11 2142 112 20 0 chr9 68176532 68176855 -74094589 + AluSx SINE Alu 1 312 0 302 259 12 12 chr9 68179146 68179231 -74092213 + CT-rich Low_complexity Low_complexity 4 88 0 780 269 85 55 chr9 68179247 68179859 -74091585 - L2 LINE L2 -54 3259 2624 407 278 46 33 chr9 68180208 68180359 -74091085 - MIR3 SINE MIR -15 193 41 1741 172 0 25 chr9 68180360 68180651 -74090793 + AluJb SINE Alu 1 285 -27 333 0 0 0 chr9 68180651 68180688 -74090756 + (CA)n Simple_repeat Simple_repeat 2 38 0 1741 172 0 25 chr9 68180688 68180716 -74090728 + AluJb SINE Alu 285 312 0 2343 107 86 3 chr9 68181424 68181760 -74089684 + THE1B LTR MaLR 1 364 0 221 200 0 0 chr9 68182286 68182326 -74089118 - L2 LINE L2 -3 3310 3271 3623 198 20 10 chr9 68182370 68183066 -74088378 - L1MB8 LINE L1 -5 6173 5471 400 338 61 14 chr9 68183262 68183475 -74087969 + MIR SINE MIR 34 256 -6 372 43 0 0 chr9 68183561 68183607 -74087837 + (CA)n Simple_repeat Simple_repeat 1 46 0 691 304 78 13 chr9 68183938 68184168 -74087276 + MIR SINE MIR 13 257 -5 225 0 0 0 chr9 68185532 68185557 -74085887 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1972 109 4 7 chr9 68185562 68185838 -74085606 - AluSx SINE Alu 0 312 38 2292 94 3 28 chr9 68186444 68186764 -74084680 - AluSx SINE Alu 0 312 1 454 348 50 74 chr9 68187172 68187471 -74083973 - L2 LINE L2 -1 3271 2980 821 155 0 70 chr9 68187829 68187971 -74083473 + FLAM_A SINE Alu 1 132 -1 328 284 100 68 chr9 68188638 68188828 -74082616 + MER91A DNA MER1_type 1 196 0 24 0 0 0 chr9 68189373 68189397 -74082047 + AT_rich Low_complexity Low_complexity 1 24 0 205 359 16 0 chr9 68189410 68189474 -74081970 - L2 LINE L2 -3 3269 3205 276 267 118 44 chr9 68189571 68189706 -74081738 + MIR3 SINE MIR 37 181 -27 427 235 76 23 chr9 68189715 68189847 -74081597 - MIR SINE MIR -73 189 51 198 282 39 68 chr9 68190488 68190591 -74080853 - MIR3 SINE MIR -13 195 96 657 230 14 0 chr9 68190600 68190739 -74080705 + MER5B DNA MER1_type 20 160 -18 434 302 8 23 chr9 68191095 68191224 -74080220 - L2 LINE L2 -3 3310 3184 1159 228 9 13 chr9 68191992 68192216 -74079228 - MER58A DNA MER1_type 0 224 2 285 268 93 10 chr9 68193357 68193454 -74077990 + L2 LINE L2 3168 3272 0 1581 137 58 50 chr9 68194152 68194495 -74076949 + MER4A LTR ERV1 1 346 -318 667 139 192 82 chr9 68194500 68194753 -74076691 + MER4C LTR ERV1 153 444 -21 261 0 0 0 chr9 68196400 68196429 -74075015 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 68198164 68198188 -74073256 + AT_rich Low_complexity Low_complexity 1 24 0 2042 130 3 0 chr9 68198785 68199100 -74072344 - AluSx SINE Alu 0 316 1 1997 140 77 3 chr9 68199313 68199649 -74071795 - MER47A DNA MER2_type 0 366 6 573 256 56 31 chr9 68199844 68200004 -74071440 - MER5B DNA MER1_type 0 178 15 479 174 54 0 chr9 68200058 68200150 -74071294 - MER5A DNA MER1_type -83 106 10 370 231 31 128 chr9 68200239 68200434 -74071010 + L2 LINE L2 2248 2423 -891 991 267 160 8 chr9 68200434 68200947 -74070497 + L2 LINE L2 2701 3289 -24 2499 242 49 65 chr9 68201401 68202191 -74069253 - MER21B LTR ERV1 -77 786 9 2502 134 9 59 chr9 68202192 68202616 -74068828 + MER57A LTR ERV1 1 403 0 381 349 86 4 chr9 68203287 68203542 -74067902 + L3b LINE CR1 1122 1397 -186 26 0 0 0 chr9 68203688 68203714 -74067730 + AT_rich Low_complexity Low_complexity 1 26 0 2672 188 33 4 chr9 68205587 68206099 -74065345 - MER74A LTR ERVL -4 554 28 2499 70 0 0 chr9 68206256 68206558 -74064886 - AluY SINE Alu -9 302 1 470 230 152 52 chr9 68206576 68206724 -74064720 + MIR SINE MIR 53 226 -36 5548 122 40 37 chr9 68206724 68207593 -74063851 - MER4D LTR ERV1 0 872 1 470 230 152 52 chr9 68207593 68207635 -74063809 + MIR SINE MIR 226 262 0 1644 97 0 0 chr9 68207653 68207859 -74063585 - AluSc SINE Alu -6 303 98 1203 217 108 22 chr9 68208419 68208477 -74062967 - MER58B DNA MER1_type -2079 341 289 1982 168 12 90 chr9 68208477 68208900 -74062544 - MLT1B LTR MaLR 0 390 1 1203 217 108 22 chr9 68208900 68209155 -74062289 - MER58B DNA MER1_type -2131 289 1 731 176 162 0 chr9 68210136 68210284 -74061160 + MER5A DNA MER1_type 12 183 -6 702 191 0 23 chr9 68210292 68210423 -74061021 + FLAM_A SINE Alu 1 128 -5 2114 116 0 10 chr9 68210439 68210731 -74060713 + AluSx SINE Alu 13 301 -11 447 305 80 42 chr9 68212040 68212279 -74059165 - MIR SINE MIR 0 262 15 2231 102 0 37 chr9 68212968 68213291 -74058153 - AluSp SINE Alu -2 311 1 26 30 0 0 chr9 68213538 68213571 -74057873 + AT_rich Low_complexity Low_complexity 1 33 0 453 264 40 0 chr9 68213690 68213815 -74057629 - Charlie8 DNA MER1_type -2193 224 95 294 209 192 39 chr9 68214561 68214795 -74056649 + L1ME LINE L1 716 985 -5085 532 261 80 9 chr9 68214873 68215123 -74056321 + L1ME LINE L1 1013 1310 -4862 939 288 119 36 chr9 68215135 68215696 -74055748 + L1ME LINE L1 1378 1891 -4189 343 134 0 110 chr9 68215696 68215778 -74055666 + L1PA10 LINE L1 6096 6168 0 939 288 119 36 chr9 68215778 68215896 -74055548 + L1ME LINE L1 1891 1998 -4082 1600 193 44 0 chr9 68215896 68216005 -74055439 + AluJo SINE Alu 11 114 -198 378 0 0 0 chr9 68216005 68216047 -74055397 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1600 193 44 0 chr9 68216047 68216211 -74055233 + AluJo SINE Alu 114 296 -16 939 288 119 36 chr9 68216211 68216710 -74054734 + L1ME LINE L1 1998 2680 -3400 333 233 25 42 chr9 68216753 68216873 -74054571 + L1ME LINE L1 3837 3954 -2126 666 251 84 5 chr9 68217198 68217389 -74054055 + MIR SINE MIR 40 245 -17 1652 138 0 0 chr9 68218080 68218311 -74053133 + AluSx SINE Alu 1 231 -81 863 211 50 6 chr9 68219388 68219568 -74051876 + MER5A DNA MER1_type 1 188 -1 663 154 101 53 chr9 68220244 68220413 -74051031 + MER96B DNA MER1_type? 3 179 -238 386 344 12 25 chr9 68220933 68221096 -74050348 + MIR3 SINE MIR 42 202 -6 256 270 202 0 chr9 68221380 68221469 -74049975 - L2 LINE L2 0 3313 3207 395 244 0 0 chr9 68221501 68221579 -74049865 + Tigger3(Golem) DNA MER2_type 3 80 -2949 859 109 0 0 chr9 68221710 68221820 -74049624 + Tigger3(Golem) DNA MER2_type 2920 3029 0 2533 74 0 0 chr9 68221883 68222192 -74049252 + AluY SINE Alu 2 310 -1 1729 172 26 13 chr9 68224336 68224644 -74046800 - AluJo SINE Alu 0 312 1 758 205 246 13 chr9 68224644 68224961 -74046483 + MER113 DNA MER1_type? 85 475 -46 459 0 0 0 chr9 68225272 68225323 -74046121 + (TG)n Simple_repeat Simple_repeat 1 51 0 239 313 68 20 chr9 68227797 68227944 -74043500 - L2 LINE L2 0 3313 3160 228 389 7 27 chr9 68228366 68228515 -74042929 - L3b LINE CR1 -189 1394 1249 1956 150 13 3 chr9 68228525 68228831 -74042613 + AluSx SINE Alu 1 309 -3 2249 107 20 3 chr9 68228876 68229175 -74042269 + AluSg SINE Alu 1 304 -6 419 296 56 6 chr9 68232036 68232198 -74039246 + MIR SINE MIR 82 251 -11 279 180 0 16 chr9 68232214 68232275 -74039169 - MIR SINE MIR -62 146 87 22 35 0 0 chr9 68232329 68232358 -74039086 + AT_rich Low_complexity Low_complexity 1 29 0 3297 177 91 9 chr9 68235428 68236099 -74035345 - L1MB2 LINE L1 0 6171 5446 1697 235 87 33 chr9 68238317 68238802 -74032642 + MLT1E LTR MaLR 15 525 -68 227 186 0 0 chr9 68238952 68238995 -74032449 + MLT1E LTR MaLR 521 563 -4 5866 80 9 1 chr9 68240672 68241458 -74029986 - L1PA13 LINE L1 -19 6144 5353 2395 82 0 7 chr9 68242277 68242580 -74028864 + AluY SINE Alu 1 301 -10 321 220 15 114 chr9 68243398 68243530 -74027914 - MER96B DNA MER1_type? -3 414 296 1898 258 42 13 chr9 68243978 68244505 -74026939 - L1MCc LINE L1 -5068 1355 814 553 221 7 34 chr9 68244687 68244836 -74026608 - L1MCc LINE L1 -6015 408 264 22 70 0 0 chr9 68245451 68245494 -74025950 + AT_rich Low_complexity Low_complexity 1 43 0 1672 239 169 27 chr9 68245825 68246636 -74024808 + L1MC4a LINE L1 5308 6233 -1575 1287 141 41 29 chr9 68246805 68247047 -74024397 + AluJb SINE Alu 24 268 -44 2025 151 0 7 chr9 68247664 68247843 -74023601 - AluJb SINE Alu -10 302 124 360 64 0 0 chr9 68247843 68247890 -74023554 + (TG)n Simple_repeat Simple_repeat 2 48 0 2025 151 0 7 chr9 68247890 68248014 -74023430 - AluJb SINE Alu -188 124 1 571 257 59 16 chr9 68248548 68248735 -74022709 - MIR SINE MIR -53 209 15 2241 100 0 13 chr9 68249388 68249687 -74021757 - AluSg SINE Alu -15 295 1 385 243 0 37 chr9 68249960 68250067 -74021377 + L2 LINE L2 3203 3305 -8 293 258 79 11 chr9 68250391 68250480 -74020964 - L2 LINE L2 -14 3258 3164 2308 95 0 10 chr9 68250921 68251216 -74020228 + AluSx SINE Alu 1 292 -20 545 174 41 158 chr9 68251400 68251489 -74019955 - MER5A DNA MER1_type -1 188 133 2275 108 0 6 chr9 68251489 68251803 -74019641 - AluSx SINE Alu 0 312 1 545 174 41 158 chr9 68251803 68251909 -74019535 - MER5A DNA MER1_type -56 133 16 484 269 77 6 chr9 68252771 68252927 -74018517 - MIR SINE MIR -10 252 86 628 223 31 49 chr9 68252928 68253004 -74018440 + MER113 DNA MER1_type? 34 110 -411 1872 157 6 10 chr9 68253004 68253316 -74018128 - AluJb SINE Alu -1 311 1 628 223 31 49 chr9 68253316 68253463 -74017981 + MER113 DNA MER1_type? 110 253 -268 1783 176 7 0 chr9 68253463 68253764 -74017680 + AluJo SINE Alu 1 303 -9 240 254 0 0 chr9 68253895 68253954 -74017490 + MER113 DNA MER1_type? 338 396 -125 204 103 0 0 chr9 68254077 68254106 -74017338 + MIR SINE MIR 221 249 -13 332 331 14 20 chr9 68254975 68255123 -74016321 - MER102b DNA MER1_type -24 317 171 299 253 32 11 chr9 68255176 68255271 -74016173 + LTR50 LTR ERVL 112 208 -587 349 252 104 0 chr9 68255329 68255444 -74016000 + LTR50 LTR ERVL 326 452 -343 881 323 28 9 chr9 68255464 68255783 -74015661 + LTR16A LTR ERVL 120 444 -6 352 359 71 39 chr9 68257325 68257734 -74013710 - L2 LINE L2 0 3272 2851 1597 162 55 0 chr9 68257786 68258057 -74013387 - AluJb SINE Alu -24 288 3 359 314 52 87 chr9 68258095 68258672 -74012772 - L2 LINE L2 -576 2738 2182 533 310 49 13 chr9 68259152 68259378 -74012066 - MLT1L LTR MaLR -339 276 43 386 220 66 0 chr9 68259423 68259514 -74011930 + MER5A DNA MER1_type 9 105 -84 27 0 0 0 chr9 68259932 68259959 -74011485 + AT_rich Low_complexity Low_complexity 1 27 0 187 235 98 0 chr9 68260424 68260475 -74010969 - L2 LINE L2 0 3272 3217 973 306 22 29 chr9 68261062 68261474 -74009970 + MLT1I LTR MaLR 1 409 0 847 124 8 0 chr9 68261956 68262085 -74009359 + AluSp/q SINE Alu 171 300 -13 318 186 0 14 chr9 68262264 68262334 -74009110 + MIR SINE MIR 94 162 -100 1254 232 82 23 chr9 68262334 68262403 -74009041 - LTR52 LTR ERVL -6 415 351 360 0 0 0 chr9 68262403 68262443 -74009001 + (CA)n Simple_repeat Simple_repeat 1 40 0 1254 232 82 23 chr9 68262443 68262765 -74008679 - LTR52 LTR ERVL -70 351 1 280 290 0 21 chr9 68262766 68262859 -74008585 + MIR SINE MIR 162 252 -10 319 257 115 0 chr9 68263980 68264093 -74007351 - MIR SINE MIR -21 241 116 1299 117 6 0 chr9 68264193 68264364 -74007080 - AluSx SINE Alu -138 174 3 669 293 11 5 chr9 68264364 68264555 -74006889 - MIR SINE MIR -66 196 5 2460 88 16 48 chr9 68265816 68266192 -74005252 - THE1B LTR MaLR 0 364 1 320 256 165 16 chr9 68266230 68266351 -74005093 - MIR3 SINE MIR -50 158 20 428 262 60 34 chr9 68267012 68267161 -74004283 - MIR SINE MIR -8 254 102 771 260 153 13 chr9 68267288 68267596 -74003848 + HsTC2 DNA Tc2 1514 1864 -34 2010 152 0 0 chr9 68267598 68267907 -74003537 - AluSq SINE Alu -4 309 1 427 279 39 78 chr9 68267937 68268195 -74003249 - L1ME3A LINE L1 -211 5910 5663 285 279 71 84 chr9 68268881 68269035 -74002409 + L2 LINE L2 3121 3272 0 632 162 33 133 chr9 68269677 68269826 -74001618 - MER5A DNA MER1_type 0 189 65 1920 189 26 0 chr9 68269826 68270170 -74001274 + L1MB5 LINE L1 5813 6165 -9 632 162 33 133 chr9 68270170 68270230 -74001214 - MER5A DNA MER1_type -124 65 1 574 283 35 0 chr9 68270759 68270932 -74000512 + MIR SINE MIR 33 211 -51 205 213 109 56 chr9 68271831 68271956 -73999488 + L2 LINE L2 2915 3051 -221 1546 305 19 24 chr9 68272382 68272998 -73998446 + L1MC4a LINE L1 5255 5867 -1941 304 297 11 0 chr9 68273080 68273171 -73998273 + MLT1H LTR MaLR 34 125 -442 2695 144 16 29 chr9 68273171 68273434 -73998010 + L1MC3 LINE L1 7189 7445 -340 2284 81 14 0 chr9 68273434 68273731 -73997713 + AluSp SINE Alu 1 301 -12 2695 144 16 29 chr9 68273731 68273952 -73997492 + L1MC3 LINE L1 7445 7667 -118 686 291 21 33 chr9 68274084 68274325 -73997119 - HsTC2 DNA Tc2 -372 1526 1289 537 224 22 30 chr9 68274358 68274492 -73996952 - HsTC2 DNA Tc2 -1765 133 1 1889 157 7 0 chr9 68274530 68274857 -73996587 + AluSx SINE Alu 1 329 0 702 274 114 57 chr9 68275365 68275803 -73995641 + MLT1H LTR MaLR 86 548 -1 197 288 17 0 chr9 68275893 68275952 -73995492 - L2 LINE L2 -8 3305 3246 239 227 84 34 chr9 68276395 68276514 -73994930 - L2 LINE L2 -211 3061 2937 1587 98 17 38 chr9 68277074 68277309 -73994135 - MER30 DNA MER1_type 0 230 1 2364 101 0 7 chr9 68278041 68278349 -73993095 + AluSq SINE Alu 1 306 -7 10562 75 2 3 chr9 68278405 68279746 -73991698 + L1P3 LINE L1 2 1341 -5120 1557 30 5 5 chr9 68279740 68279932 -73991512 - L1PA4 LINE L1 -759 5387 5195 * 5510 61 5 29 chr9 68279932 68280717 -73990727 + L1PA4 LINE L1 5389 6155 0 1115 137 0 36 chr9 68281084 68281252 -73990192 - AluSq SINE Alu -151 162 1 1464 129 24 108 chr9 68281402 68281734 -73989710 + L1MA2 LINE L1 6001 6304 0 238 317 98 8 chr9 68281969 68282092 -73989352 + MIR SINE MIR 53 186 -76 2299 99 0 43 chr9 68282212 68282344 -73989100 + AluSq SINE Alu 1 137 -176 249 57 0 0 chr9 68282344 68282379 -73989065 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2299 99 0 43 chr9 68282379 68282568 -73988876 + AluSq SINE Alu 137 308 -5 228 271 193 36 chr9 68282613 68282753 -73988691 - MIR3 SINE MIR -13 195 34 350 260 0 0 chr9 68283782 68283855 -73987589 + Charlie8 DNA MER1_type 1 73 -2344 2176 117 0 20 chr9 68285446 68285746 -73985698 + AluSx SINE Alu 1 294 -18 2619 151 12 107 chr9 68286349 68286858 -73984586 + MLT2B2 LTR ERVL 1 452 -63 1811 167 28 0 chr9 68286858 68287145 -73984299 - AluJb SINE Alu -17 295 1 2619 151 12 107 chr9 68287145 68287204 -73984240 + MLT2B2 LTR ERVL 452 515 0 2019 151 10 3 chr9 68287356 68287655 -73983789 + AluSx SINE Alu 1 301 -11 2138 135 3 0 chr9 68287980 68288291 -73983153 + AluSx SINE Alu 1 312 0 712 258 5 15 chr9 68288299 68288497 -73982947 + LTR16A1 LTR ERVL 262 457 0 461 272 8 8 chr9 68288639 68288764 -73982680 - LTR33 LTR ERVL -28 493 369 1752 176 67 3 chr9 68289181 68289527 -73981917 + L1MA8 LINE L1 5912 6279 -12 2212 101 3 0 chr9 68289871 68290351 -73981093 + AluSq SINE Alu 1 481 0 440 272 15 7 chr9 68292302 68292438 -73979006 + MIR SINE MIR 13 149 -113 1760 166 3 13 chr9 68293465 68293779 -73977665 + AluSx SINE Alu 1 311 -1 324 300 18 0 chr9 68293892 68294002 -73977442 - MIR3 SINE MIR -52 156 45 293 250 0 15 chr9 68294075 68294143 -73977301 - HAL1 LINE L1 -11 2496 2430 467 99 0 0 chr9 68294212 68294283 -73977161 - Alu SINE Alu -7 305 235 973 133 0 7 chr9 68294283 68294426 -73977018 - AluSq/x SINE Alu -171 142 1 4707 126 58 72 chr9 68294431 68295440 -73976004 + pTR5 LTR ERV1 743 2029 -409 335 222 11 16 chr9 68295440 68295547 -73975897 + LTR30 LTR ERV1 375 478 -91 1296 75 0 16 chr9 68295570 68295756 -73975688 + pTR5 LTR ERV1 209 391 -2047 1366 250 141 64 chr9 68295756 68296616 -73974828 - HAL1 LINE L1 -160 2347 1422 192 354 82 0 chr9 68296627 68296774 -73974670 - MIR SINE MIR -10 252 94 491 311 117 25 chr9 68296796 68297079 -73974365 - MLT1I LTR MaLR -19 390 82 2870 213 57 5 chr9 68297086 68297701 -73973743 - MER99 DNA DNA -1 827 181 22 35 0 0 chr9 68297839 68297868 -73973576 + AT_rich Low_complexity Low_complexity 1 29 0 327 287 75 0 chr9 68298346 68298440 -73973004 - MER99 DNA DNA -726 102 2 540 96 0 0 chr9 68298888 68298961 -73972483 + AluS SINE Alu 2 74 -239 1560 238 140 61 chr9 68299099 68299425 -73972019 + L1MC4 LINE L1 7278 7577 -465 2457 60 23 0 chr9 68299425 68299725 -73971719 + AluY SINE Alu 1 307 -4 1560 238 140 61 chr9 68299725 68300107 -73971337 + L1MC4 LINE L1 7577 8042 0 22 0 0 0 chr9 68300169 68300191 -73971253 + AT_rich Low_complexity Low_complexity 1 22 0 361 268 73 62 chr9 68300588 68300767 -73970677 - L3 LINE CR1 -26 1551 1371 485 300 68 5 chr9 68301310 68301530 -73969914 - L3 LINE CR1 -205 1372 1139 645 246 62 0 chr9 68301977 68302156 -73969288 + MIR SINE MIR 62 251 -11 2471 80 0 3 chr9 68302639 68302941 -73968503 - AluY SINE Alu -10 301 1 270 211 0 164 chr9 68303356 68303484 -73967960 - MER102b DNA MER1_type -2 339 233 182 303 148 41 chr9 68303606 68303728 -73967716 + MIR SINE MIR 2 136 -126 23 0 0 0 chr9 68304286 68304309 -73967135 + AT_rich Low_complexity Low_complexity 1 23 0 589 123 118 107 chr9 68304582 68304769 -73966675 + MER53 DNA DNA 1 189 0 244 329 0 0 chr9 68305161 68305234 -73966210 - MIR3 SINE MIR -28 180 108 180 111 0 0 chr9 68305295 68305322 -73966122 + (TAG)n Simple_repeat Simple_repeat 1 27 0 * 201 274 0 0 chr9 68305320 68305393 -73966051 + GA-rich Low_complexity Low_complexity 3 75 0 268 256 58 16 chr9 68305501 68305622 -73965822 - L1ME4a LINE L1 -12 6109 5984 947 232 156 6 chr9 68305975 68306407 -73965037 + MLT1H LTR MaLR 4 548 -1 477 346 39 0 chr9 68307386 68307568 -73963876 - MIR SINE MIR -66 196 8 874 157 0 136 chr9 68308017 68308259 -73963185 + MER3 DNA MER1_type 1 209 0 669 279 41 29 chr9 68308425 68308475 -73962969 - MER102b DNA MER1_type -1089 339 291 1821 133 19 0 chr9 68308475 68308738 -73962706 + AluSx SINE Alu 1 268 -44 669 279 41 29 chr9 68308738 68308931 -73962513 - MER102b DNA MER1_type -1137 291 93 1288 259 81 15 chr9 68308950 68309409 -73962035 + LTR16C LTR ERVL 3 491 0 2333 94 0 0 chr9 68309560 68309848 -73961596 - AluSc SINE Alu -21 288 1 21 0 0 0 chr9 68309876 68309897 -73961547 + AT_rich Low_complexity Low_complexity 1 21 0 287 177 42 31 chr9 68313993 68314089 -73957355 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 24026 81 6 8 chr9 68314573 68318674 -73952770 - L1PA7 LINE L1 -1 6153 2059 30 59 0 0 chr9 68318995 68319046 -73952398 + AT_rich Low_complexity Low_complexity 1 51 0 220 227 0 0 chr9 68319052 68319096 -73952348 - MIR SINE MIR -68 140 97 544 312 56 26 chr9 68319113 68319344 -73952100 + MIR SINE MIR 16 253 -9 2317 96 3 0 chr9 68320182 68320474 -73950970 + AluSx SINE Alu 1 293 -19 210 222 0 0 chr9 68320474 68320510 -73950934 + polypurine Low_complexity Low_complexity 1 36 0 299 269 177 0 chr9 68320565 68320695 -73950749 + MIR SINE MIR 99 251 -11 495 286 51 20 chr9 68321871 68322117 -73949327 - MIR SINE MIR -4 258 6 296 308 11 0 chr9 68322462 68322572 -73948872 + MIR SINE MIR 47 141 -67 2030 136 3 26 chr9 68322647 68322956 -73948488 + AluSx SINE Alu 1 302 -10 5101 92 13 3 chr9 68323382 68324063 -73947381 - LTR8 LTR ERV1 0 691 4 292 235 31 31 chr9 68324063 68324155 -73947289 + MIR SINE MIR 106 197 -65 1507 137 49 4 chr9 68325771 68326034 -73945410 - L1MA7 LINE L1 0 6291 6017 461 235 0 0 chr9 68326057 68326159 -73945285 + MIR SINE MIR 85 186 -76 381 22 0 0 chr9 68326530 68326576 -73944868 + (CA)n Simple_repeat Simple_repeat 1 46 0 432 262 10 0 chr9 68326746 68326849 -73944595 + L2 LINE L2 3201 3304 -9 232 243 86 46 chr9 68326863 68327015 -73944429 + L1ME4a LINE L1 5962 6119 -2 225 0 0 0 chr9 68327791 68327816 -73943628 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 314 299 43 17 chr9 68327948 68328065 -73943379 - L1ME3A LINE L1 -215 5955 5836 1336 209 39 81 chr9 68328101 68328508 -73942936 + MLT2C1 LTR ERVL 8 397 0 1136 167 25 10 chr9 68328541 68328739 -73942705 - AluJo SINE Alu -26 286 86 1149 230 9 18 chr9 68328768 68328994 -73942450 - MER58A DNA MER1_type 0 224 1 2348 211 57 64 chr9 68328994 68330118 -73941326 - L1ME3A LINE L1 -353 5809 4697 1065 167 23 0 chr9 68330119 68330315 -73941129 - AluSg/x SINE Alu 0 312 117 2060 142 6 10 chr9 68331059 68331370 -73940074 - AluSx SINE Alu -2 310 1 661 228 154 0 chr9 68331988 68332137 -73939307 + MER5A DNA MER1_type 16 187 -2 1377 189 87 8 chr9 68332559 68332823 -73938621 + AluJo SINE Alu 2 286 -26 225 0 0 0 chr9 68332828 68332853 -73938591 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 755 307 46 41 chr9 68332915 68333332 -73938112 + L2 LINE L2 2257 2675 -639 462 114 0 0 chr9 68333370 68333440 -73938004 + (TCC)n Simple_repeat Simple_repeat 1 70 0 1849 146 20 7 chr9 68333440 68333735 -73937709 - AluJb SINE Alu -11 301 3 531 306 112 42 chr9 68333844 68334298 -73937146 + L2 LINE L2 2827 3312 -1 390 360 67 48 chr9 68335011 68335516 -73935928 + L2 LINE L2 2067 2581 -733 680 228 155 10 chr9 68335574 68335767 -73935677 - MIR SINE MIR -40 222 2 253 344 86 25 chr9 68335767 68336010 -73935434 + L2 LINE L2 2590 2847 -467 253 357 80 56 chr9 68336076 68336289 -73935155 + L2 LINE L2 2971 3188 -84 429 218 0 0 chr9 68336495 68336573 -73934871 + Tigger5 DNA MER2_type 2 79 -2244 300 213 49 0 chr9 68336578 68336639 -73934805 - Tigger5 DNA MER2_type -6 2317 2254 432 205 13 0 chr9 68336642 68336720 -73934724 + Tigger5 DNA MER2_type 2245 2323 0 192 333 53 114 chr9 68336741 68337005 -73934439 - L2 LINE L2 0 3272 3025 285 319 156 44 chr9 68337102 68337666 -73933778 - L2 LINE L2 -477 2837 2211 2149 135 0 3 chr9 68337969 68338280 -73933164 + AluSx SINE Alu 1 310 -2 791 242 6 11 chr9 68339232 68339410 -73932034 + MER69A DNA AcHobo 1 177 0 379 264 83 107 chr9 68339431 68339594 -73931850 + MLT1J LTR MaLR 1 154 -357 1685 164 3 31 chr9 68339594 68339887 -73931557 - AluJo SINE Alu -27 285 1 379 264 83 107 chr9 68339887 68340049 -73931395 + MLT1J LTR MaLR 154 318 -193 2196 132 0 0 chr9 68340500 68340804 -73930640 + AluSq SINE Alu 5 308 -5 561 220 117 112 chr9 68342388 68342611 -73928833 + MER58A DNA MER1_type 1 224 0 215 216 0 0 chr9 68342678 68342715 -73928729 + polypurine Low_complexity Low_complexity 1 37 0 1971 260 109 8 chr9 68342867 68343371 -73928073 - MLT1H1 LTR MaLR 0 555 1 359 304 65 36 chr9 68343436 68343598 -73927846 - MIR SINE MIR -63 145 16 184 293 27 64 chr9 68343917 68344105 -73927339 + L2 LINE L2 2212 2392 -922 575 307 60 20 chr9 68344170 68344421 -73927023 + MIR SINE MIR 1 261 -1 691 236 66 6 chr9 68344622 68344804 -73926640 - MIR SINE MIR -12 250 58 201 121 0 0 chr9 68344899 68344932 -73926512 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4391 148 49 23 chr9 68345257 68346054 -73925390 + L1MA4A LINE L1 5486 6303 0 1601 251 84 27 chr9 68346062 68346540 -73924904 - LTR40a LTR ERVL -14 505 1 201 159 0 0 chr9 68347058 68347102 -73924342 + A-rich Low_complexity Low_complexity 1 44 0 1392 157 19 91 chr9 68348472 68348623 -73922821 - L1MB3 LINE L1 0 6183 6069 1977 146 0 31 chr9 68348623 68348945 -73922499 - AluJo SINE Alu 0 312 1 1392 157 19 91 chr9 68348945 68349135 -73922309 - L1MB3 LINE L1 -114 6069 5867 1188 248 72 14 chr9 68349510 68349873 -73921571 - LTR16C LTR ERVL -4 487 104 1232 201 49 47 chr9 68350628 68350688 -73920756 + MLT1B LTR MaLR 7 65 -325 2301 142 12 0 chr9 68350688 68351027 -73920417 + MER2 DNA MER2_type 2 344 0 1232 201 49 47 chr9 68351027 68351331 -73920113 + MLT1B LTR MaLR 65 390 0 246 171 0 0 chr9 68351948 68351989 -73919455 - MLT2E LTR ERVL -340 288 248 247 326 94 36 chr9 68352046 68352184 -73919260 - L2 LINE L2 0 3272 3127 262 278 41 10 chr9 68352184 68352281 -73919163 + L1ME LINE L1 5665 5764 -357 3403 251 93 34 chr9 68352281 68354294 -73917150 - HERVL LTR ERVL -922 4732 2577 437 247 25 24 chr9 68354910 68355048 -73916396 - MIR3 SINE MIR -4 204 65 615 216 40 99 chr9 68355058 68355280 -73916164 + MIR SINE MIR 52 260 -2 673 228 74 19 chr9 68355420 68355582 -73915862 - MLT2E LTR ERVL -446 182 12 35 0 0 0 chr9 68356001 68356036 -73915408 + AT_rich Low_complexity Low_complexity 1 35 0 6784 122 21 27 chr9 68356036 68356201 -73915243 - L1MA5A LINE L1 -22 6275 6111 1988 142 3 10 chr9 68356201 68356503 -73914941 + AluSx SINE Alu 1 300 -12 6784 122 21 27 chr9 68356503 68357530 -73913914 - L1MA5A LINE L1 -186 6111 5094 2343 109 0 3 chr9 68357530 68357834 -73913610 - AluSc SINE Alu -6 303 1 6784 122 21 27 chr9 68357834 68357937 -73913507 - L1MA5A LINE L1 -1203 5094 4992 943 152 33 0 chr9 68358785 68358936 -73912508 + AluJb SINE Alu 138 293 -19 269 180 0 0 chr9 68358957 68359007 -73912437 - L1MC/D LINE L1 -863 5496 5447 561 41 102 0 chr9 68359021 68359168 -73912276 + (TA)n Simple_repeat Simple_repeat 1 162 0 5401 152 35 5 chr9 68359337 68360215 -73911229 - L1MC1 LINE L1 -6 6327 5423 279 309 124 0 chr9 68360621 68360912 -73910532 - L1MEd LINE L1 -2652 3477 3151 40 0 0 0 chr9 68361517 68361557 -73909887 + AT_rich Low_complexity Low_complexity 1 40 0 1817 145 64 14 chr9 68362072 68362368 -73909076 + AluSx SINE Alu 1 311 -1 2187 227 76 72 chr9 68362476 68363494 -73907950 - L1MC5 LINE L1 -302 7659 6638 673 264 52 64 chr9 68363568 68363989 -73907455 - L1MEd LINE L1 -4944 1175 760 1111 300 136 41 chr9 68364017 68364553 -73906891 - L1MEd LINE L1 -5531 588 2 279 297 0 0 chr9 68366028 68366102 -73905342 - MIR SINE MIR -79 183 110 2171 127 0 10 chr9 68366512 68366819 -73904625 - AluSx SINE Alu -8 304 1 574 256 0 24 chr9 68366836 68367004 -73904440 + MIR SINE MIR 99 262 0 363 344 6 25 chr9 68367271 68367431 -73904013 - MIR SINE MIR 0 262 106 2306 118 3 0 chr9 68367460 68367766 -73903678 + AluSp SINE Alu 1 307 -6 1178 150 16 42 chr9 68368551 68368744 -73902700 + MER5A DNA MER1_type 1 188 -1 2318 99 6 10 chr9 68369241 68369554 -73901890 - AluSx SINE Alu 0 312 1 442 304 20 104 chr9 68369554 68369987 -73901457 - L2 LINE L2 -7 3306 2927 2046 151 0 0 chr9 68369987 68370299 -73901145 + AluSx SINE Alu 1 312 0 442 304 20 104 chr9 68370299 68370414 -73901030 - L2 LINE L2 -386 2927 2804 468 283 68 54 chr9 68370432 68370711 -73900733 - MLT1J LTR MaLR 0 511 229 1033 323 115 35 chr9 68370849 68371874 -73899570 - L2 LINE L2 -481 2833 1727 248 313 17 78 chr9 68372383 68372562 -73898882 - MIR3 SINE MIR -11 197 30 652 346 136 37 chr9 68372745 68373500 -73897944 - L3 LINE CR1 -737 840 11 295 274 123 46 chr9 68373917 68374104 -73897340 + L1ME4a LINE L1 5602 5820 -301 2591 171 88 6 chr9 68374104 68374571 -73896873 + MLT1D LTR MaLR 1 505 0 295 274 123 46 chr9 68374571 68374668 -73896776 + L1ME4a LINE L1 5820 5908 -213 829 253 49 113 chr9 68374747 68375331 -73896113 + L2 LINE L2 2624 3167 -146 1719 122 0 4 chr9 68375331 68375569 -73895875 + AluSx SINE Alu 1 237 -75 995 161 56 127 chr9 68375583 68375907 -73895537 + L1MC3 LINE L1 7485 7785 0 456 311 132 6 chr9 68376861 68377028 -73894416 - MIR SINE MIR -72 190 3 2263 97 0 16 chr9 68377084 68377394 -73894050 + AluSg SINE Alu 2 306 -4 216 97 0 0 chr9 68378051 68378082 -73893362 + (CAT)n Simple_repeat Simple_repeat 1 31 0 4133 174 18 26 chr9 68378695 68379547 -73891897 - L1MB8 LINE L1 -10 6168 5324 746 266 159 28 chr9 68380951 68381315 -73890129 + MLT1J2 LTR MaLR 39 450 0 2689 56 8 32 chr9 68382810 68383184 -73888260 + L1PA5 LINE L1 5790 6154 0 424 310 89 6 chr9 68383818 68383976 -73887468 - MIR3 SINE MIR -18 190 20 194 105 26 0 chr9 68384017 68384055 -73887389 + GA-rich Low_complexity Low_complexity 3 41 0 723 273 23 113 chr9 68384714 68385058 -73886386 + MLT1H LTR MaLR 77 360 -189 1600 171 7 47 chr9 68385058 68385356 -73886088 + AluJo SINE Alu 1 286 -26 723 273 23 113 chr9 68385356 68385531 -73885913 + MLT1H LTR MaLR 360 549 0 573 292 188 12 chr9 68385531 68385866 -73885578 - MLT1H LTR MaLR -45 504 111 366 207 331 0 chr9 68386826 68386947 -73884497 + MIR3 SINE MIR 27 187 -21 202 154 15 15 chr9 68388592 68388657 -73882787 + C-rich Low_complexity Low_complexity 3 67 0 448 331 0 14 chr9 68390599 68390744 -73880700 - MIR3 SINE MIR -65 143 1 359 338 78 0 chr9 68390812 68390954 -73880490 + MIR3 SINE MIR 46 198 -10 218 191 0 0 chr9 68391272 68391314 -73880130 + L2 LINE L2 3271 3312 -1 213 312 70 0 chr9 68391952 68392029 -73879415 - MIR SINE MIR -68 140 58 1659 185 33 3 chr9 68392236 68392539 -73878905 - AluJb SINE Alu 0 312 1 1827 139 29 0 chr9 68392663 68392936 -73878508 + AluJo SINE Alu 22 302 -10 187 397 0 0 chr9 68394458 68394536 -73876908 + L2 LINE L2 3227 3304 -9 21 36 0 0 chr9 68394678 68394706 -73876738 + AT_rich Low_complexity Low_complexity 1 28 0 297 295 100 111 chr9 68394912 68395007 -73876437 + L2 LINE L2 3015 3110 -162 2224 176 41 17 chr9 68395007 68395422 -73876022 + MSTB LTR MaLR 1 425 -1 297 295 100 111 chr9 68395422 68395587 -73875857 + L2 LINE L2 3110 3272 0 416 222 0 0 chr9 68396049 68396121 -73875323 + MER5A DNA MER1_type 1 72 -117 2191 102 0 0 chr9 68396123 68396433 -73875011 + AluSq SINE Alu 1 310 0 321 324 113 15 chr9 68396835 68397039 -73874405 - MIR SINE MIR -19 243 20 941 334 64 5 chr9 68397111 68397548 -73873896 + L2 LINE L2 2229 2691 -623 293 314 59 13 chr9 68398272 68398425 -73873019 + L2 LINE L2 2729 2888 -426 4763 130 19 10 chr9 68399454 68400253 -73871191 + L1PA16 LINE L1 5356 6161 -5 1116 207 121 16 chr9 68400424 68400738 -73870706 - MLT1A1 LTR MaLR 0 365 19 569 262 0 63 chr9 68400781 68401002 -73870442 + MER112 DNA MER1_type 37 243 -17 518 251 54 24 chr9 68402972 68403139 -73868305 + L2 LINE L2 3137 3308 -5 527 324 98 57 chr9 68404079 68404610 -73866834 - L2 LINE L2 -460 2854 2302 2191 94 3 31 chr9 68405202 68405520 -73865924 - AluSx SINE Alu -3 309 1 231 95 0 79 chr9 68405615 68405678 -73865766 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 5655 172 24 50 chr9 68405692 68406166 -73865278 - L1MA4 LINE L1 -13 6287 5802 180 0 0 0 chr9 68406166 68406186 -73865258 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 303 28 0 0 chr9 68406185 68406221 -73865223 + (GA)n Simple_repeat Simple_repeat 1 36 0 5655 172 24 50 chr9 68406186 68407781 -73863663 - L1MA4 LINE L1 -498 5802 4302 359 153 0 0 chr9 68407793 68407852 -73863592 - L1MA4 LINE L1 -2046 4100 4042 264 272 40 89 chr9 68408267 68408469 -73862975 + MIR SINE MIR 44 235 -27 1153 105 0 6 chr9 68409115 68409287 -73862157 + L1MA3 LINE L1 6135 6305 0 344 327 93 7 chr9 68409578 68409728 -73861716 + HAL1b LINE L1 748 910 -438 821 230 73 8 chr9 68409734 68409995 -73861449 - L1MC/D LINE L1 -596 5570 5296 463 282 118 32 chr9 68410567 68410787 -73860657 - MIR SINE MIR -8 254 16 602 290 70 55 chr9 68410922 68411153 -73860291 - L2 LINE L2 -1 3312 3086 1946 148 13 62 chr9 68411153 68411537 -73859907 - MLT1A1 LTR MaLR 0 365 1 602 290 70 55 chr9 68411537 68411803 -73859641 - L2 LINE L2 -227 3086 2727 356 314 111 52 chr9 68412747 68413072 -73858372 + L1ME LINE L1 5471 5639 -482 257 303 0 0 chr9 68415759 68415848 -73855596 - L1MC5 LINE L1 -532 7429 7341 532 239 148 0 chr9 68415866 68416021 -73855423 - MIR SINE MIR -76 186 9 511 122 0 0 chr9 68416057 68416139 -73855305 - L1MA5 LINE L1 -2 6298 6217 288 336 30 92 chr9 68416326 68416476 -73854968 - L2 LINE L2 -22 3250 3123 709 211 100 5 chr9 68416476 68416666 -73854778 - MER3 DNA MER1_type -1 208 1 288 336 30 92 chr9 68416666 68416786 -73854658 - L2 LINE L2 -149 3123 2997 233 322 195 7 chr9 68416787 68416936 -73854508 - MIR SINE MIR -74 188 12 315 313 151 42 chr9 68417965 68418230 -73853214 - L1MC/D LINE L1 -2031 5777 5484 333 269 134 0 chr9 68418249 68418383 -73853061 + MIR SINE MIR 85 236 -26 182 300 17 17 chr9 68418725 68418785 -73852659 - L3 LINE CR1 -2 1575 1516 332 304 80 43 chr9 68419141 68419279 -73852165 + HAL1 LINE L1 2274 2416 -91 318 161 48 0 chr9 68419466 68419528 -73851916 + Tigger7 DNA MER2_type 2422 2486 -1 348 248 95 10 chr9 68419528 68419680 -73851764 + L1ME3 LINE L1 5973 6154 -8 324 291 189 0 chr9 68421158 68421306 -73850138 + MIR SINE MIR 72 247 -15 514 243 216 28 chr9 68422561 68422742 -73848702 - MIR SINE MIR -46 216 2 348 306 65 0 chr9 68422978 68423086 -73848358 - MIR3 SINE MIR -5 203 89 360 335 94 16 chr9 68423131 68423376 -73848068 + L2 LINE L2 2121 2384 -930 1669 154 43 7 chr9 68423380 68423685 -73847759 - MER1B DNA MER1_type 0 339 24 208 279 0 33 chr9 68424307 68424368 -73847076 - L2 LINE L2 -4 3309 3251 23 0 0 0 chr9 68424578 68424601 -73846843 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr9 68425075 68425111 -73846333 + AT_rich Low_complexity Low_complexity 1 36 0 441 249 29 69 chr9 68425302 68425571 -73845873 - Charlie8 DNA MER1_type -989 1428 79 376 338 108 17 chr9 68425986 68426217 -73845227 - L1M4 LINE L1 -1854 4292 4041 433 229 9 0 chr9 68426308 68426413 -73845031 - L1ME1 LINE L1 -4 6162 6057 315 240 142 33 chr9 68426421 68426583 -73844861 - L1M4 LINE L1 -2204 3942 3767 2522 84 0 0 chr9 68426583 68426893 -73844551 - AluSx SINE Alu 0 312 3 315 240 142 33 chr9 68426893 68426954 -73844490 - L1M4 LINE L1 -2379 3767 3714 422 275 88 22 chr9 68427440 68427895 -73843549 - L1ME4a LINE L1 -2 6119 5599 242 250 12 24 chr9 68427948 68428032 -73843412 - L1ME4a LINE L1 -69 6052 5970 574 301 107 9 chr9 68428110 68428535 -73842909 - L1ME4a LINE L1 -295 5826 5366 34 42 0 0 chr9 68429256 68429304 -73842140 + AT_rich Low_complexity Low_complexity 1 48 0 240 35 0 0 chr9 68430106 68430135 -73841309 + (A)n Simple_repeat Simple_repeat 1 29 0 515 303 19 12 chr9 68430730 68430892 -73840552 - MIR SINE MIR -6 256 94 310 378 37 54 chr9 68430914 68431210 -73840234 + L2 LINE L2 2862 3152 -120 204 293 40 53 chr9 68431268 68431343 -73840101 - MER91C DNA MER1_type -33 107 34 2043 190 52 44 chr9 68432274 68432775 -73838669 + MLT1D LTR MaLR 1 505 0 244 330 102 57 chr9 68433004 68433180 -73838264 - MIR3 SINE MIR -23 185 2 252 299 88 36 chr9 68433410 68433547 -73837897 - L2 LINE L2 -2 3311 3168 786 199 85 4 chr9 68434278 68434549 -73836895 - Charlie5 DNA MER1_type 0 2620 2328 4288 226 76 24 chr9 68434549 68436175 -73835269 - L1MDb LINE L1 -3944 2462 790 257 250 0 0 chr9 68436175 68436227 -73835217 + L1MEc LINE L1 35 86 -6310 314 282 51 45 chr9 68436245 68436401 -73835043 - L1MDb LINE L1 -5908 488 332 594 99 20 0 chr9 68436409 68436510 -73834934 - Charlie5 DNA MER1_type -276 2336 2234 27 0 0 0 chr9 68436511 68436538 -73834906 + AT_rich Low_complexity Low_complexity 1 27 0 280 252 42 59 chr9 68436934 68437053 -73834391 + MER3 DNA MER1_type 40 156 -53 1574 184 37 5 chr9 68437066 68437446 -73833998 + MER3 DNA MER1_type 2233 2624 0 637 299 39 44 chr9 68439541 68439738 -73831706 + L1M4 LINE L1 4279 4475 -1671 2535 57 0 0 chr9 68439738 68440035 -73831409 + AluY SINE Alu 1 297 -14 637 299 39 44 chr9 68440035 68440245 -73831199 + L1M4 LINE L1 4475 4684 -1462 2267 101 0 32 chr9 68440247 68440383 -73831061 + AluSx SINE Alu 1 140 -172 2497 80 0 0 chr9 68440383 68440694 -73830750 + AluY SINE Alu 1 311 0 2267 101 0 32 chr9 68440694 68440873 -73830571 + AluSx SINE Alu 140 306 -6 382 250 8 0 chr9 68441099 68441223 -73830221 + L1M4 LINE L1 4924 5048 -1098 180 386 61 23 chr9 68441473 68441605 -73829839 - MIR SINE MIR -55 153 17 214 162 40 50 chr9 68441625 68441724 -73829720 + GA-rich Low_complexity Low_complexity 2 99 0 200 231 138 0 chr9 68441833 68441898 -73829546 + MIR3 SINE MIR 96 169 -39 316 235 0 29 chr9 68441977 68442045 -73829399 - L2 LINE L2 -8 3305 3240 21 82 0 0 chr9 68442155 68442204 -73829240 + AT_rich Low_complexity Low_complexity 1 49 0 407 156 133 0 chr9 68442320 68442410 -73829034 - L1MB5 LINE L1 -18 6156 6055 282 290 15 3 chr9 68442949 68443084 -73828360 - MIR SINE MIR -7 255 83 449 271 43 63 chr9 68443409 68443616 -73827828 + L2 LINE L2 3083 3285 -28 878 185 34 39 chr9 68444080 68444285 -73827159 - MIR SINE MIR -2 260 57 1042 165 58 5 chr9 68444314 68444520 -73826924 + MER20 DNA MER1_type 3 219 0 1475 241 62 19 chr9 68444649 68445118 -73826326 - MLT1D LTR MaLR 0 505 17 421 256 124 8 chr9 68445125 68445246 -73826198 - MIR SINE MIR -108 154 20 2301 79 33 0 chr9 68445295 68445598 -73825846 + AluSp SINE Alu 1 313 0 1539 191 84 0 chr9 68445965 68446300 -73825144 + L1MB5 LINE L1 5804 6166 -8 221 185 15 0 chr9 68447682 68447747 -73823697 + GA-rich Low_complexity Low_complexity 2 67 0 2006 116 0 0 chr9 68447862 68448130 -73823314 + AluSx SINE Alu 35 302 -10 222 269 172 78 chr9 68448205 68448618 -73822826 - L2 LINE L2 0 3313 2862 1660 163 25 7 chr9 68450716 68450999 -73820445 + AluJb SINE Alu 13 300 -12 356 291 55 18 chr9 68451062 68451172 -73820272 + L2 LINE L2 3145 3258 -14 544 196 34 29 chr9 68451668 68451825 -73819619 + MIR SINE MIR 99 257 -5 216 269 0 125 chr9 68451974 68452078 -73819366 - L3 LINE CR1 -5 1572 1482 4817 137 62 6 chr9 68455094 68455917 -73815527 - Tigger7 DNA MER2_type -1617 870 2 734 246 213 17 chr9 68455917 68456274 -73815170 - L1ME3A LINE L1 -195 5975 5549 769 128 23 23 chr9 68456659 68456792 -73814652 - FLAM_C SINE Alu 0 133 1 37 69 0 0 chr9 68456798 68456870 -73814574 + AT_rich Low_complexity Low_complexity 1 72 0 583 273 99 51 chr9 68457439 68457732 -73813712 - L2 LINE L2 -8 3305 2999 389 241 218 17 chr9 68458360 68458534 -73812910 + MIR SINE MIR 51 259 -3 1099 301 46 3 chr9 68458591 68458960 -73812484 + L2 LINE L2 2395 2779 -535 206 256 0 0 chr9 68459558 68459601 -73811843 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 21 36 0 0 chr9 68459963 68459991 -73811453 + AT_rich Low_complexity Low_complexity 1 28 0 182 289 0 0 chr9 68460647 68460685 -73810759 - L2 LINE L2 -91 3222 3185 182 369 56 26 chr9 68461950 68462145 -73809299 - L2 LINE L2 -428 2886 2686 384 338 138 3 chr9 68462261 68462572 -73808872 + L2 LINE L2 2252 2604 -710 * 767 279 114 55 chr9 68462550 68462577 -73808867 + L2 LINE L2 2812 2836 -477 505 181 281 0 chr9 68462577 68462748 -73808696 - MER20 DNA MER1_type 0 219 1 767 279 114 55 chr9 68462748 68463194 -73808250 + L2 LINE L2 2836 3313 0 2172 85 7 3 chr9 68464242 68464524 -73806920 + AluSq SINE Alu 12 294 -19 807 249 52 30 chr9 68464664 68464897 -73806547 + MIR SINE MIR 6 243 -19 309 179 0 0 chr9 68466066 68466122 -73805322 - Alu SINE Alu -9 293 238 288 309 46 66 chr9 68466401 68466553 -73804891 - MIR SINE MIR -64 198 50 847 210 78 24 chr9 68466586 68466791 -73804653 - MER20 DNA MER1_type 0 219 4 2155 115 0 0 chr9 68467100 68467388 -73804056 - AluSx SINE Alu -24 288 1 948 187 44 15 chr9 68468698 68468901 -73802543 - MER3 DNA MER1_type 0 209 1 2239 105 3 3 chr9 68469156 68469462 -73801982 + AluSx SINE Alu 1 306 -6 1005 251 45 15 chr9 68469638 68469969 -73801475 + MER102b DNA MER1_type 1 341 0 829 391 77 8 chr9 68470715 68471369 -73800075 - L3 LINE CR1 -848 729 31 1332 209 67 83 chr9 68472926 68473420 -73798024 + MLT1D LTR MaLR 16 501 -4 973 178 0 37 chr9 68473869 68474032 -73797412 - FRAM SINE Alu -8 158 2 226 250 132 46 chr9 68474054 68474206 -73797238 - L1ME4a LINE L1 -1 6120 5956 631 275 79 46 chr9 68474236 68474801 -73796643 - L1ME4a LINE L1 -229 5892 5313 1743 127 91 11 chr9 68474937 68475212 -73796232 - AluJb SINE Alu -15 297 1 1685 191 3 0 chr9 68476639 68476932 -73794512 + AluJo SINE Alu 5 298 -14 498 172 97 0 chr9 68476932 68477025 -73794419 - MER2 DNA MER2_type -242 103 2 804 116 0 84 chr9 68477025 68477180 -73794264 + L1MB5 LINE L1 6024 6165 -9 256 250 45 11 chr9 68477286 68477374 -73794070 + L1ME4a LINE L1 6003 6093 -28 911 150 0 0 chr9 68478384 68478517 -73792927 + FLAM_C SINE Alu 1 133 0 455 292 88 45 chr9 68478690 68479111 -73792333 - L1MC/D LINE L1 -1997 5811 5373 477 333 85 59 chr9 68479508 68479811 -73791633 - L1MC/D LINE L1 -1206 4940 4615 2320 112 0 0 chr9 68479811 68480124 -73791320 + AluSq SINE Alu 1 313 0 477 333 85 59 chr9 68480124 68480364 -73791080 - L1MC/D LINE L1 -1531 4615 4383 26 0 0 0 chr9 68480394 68480420 -73791024 + AT_rich Low_complexity Low_complexity 1 26 0 291 307 26 35 chr9 68480557 68480785 -73790659 - L1MC/D LINE L1 -2638 3508 3283 452 305 58 56 chr9 68480906 68481336 -73790108 - L1MC/D LINE L1 -3054 3092 2662 23 42 0 21 chr9 68481386 68481413 -73790031 + AT_rich Low_complexity Low_complexity 1 28 -19 2002 110 7 17 chr9 68481413 68481705 -73789739 - AluJb SINE Alu -23 289 1 23 42 0 21 chr9 68481705 68481725 -73789719 + AT_rich Low_complexity Low_complexity 28 47 0 1668 232 50 25 chr9 68482258 68482702 -73788742 - MLT1C LTR MaLR -2 465 11 259 195 161 11 chr9 68483273 68483360 -73788084 - HAL1 LINE L1 -1044 1463 1364 307 266 16 39 chr9 68484229 68484357 -73787087 + MER5B DNA MER1_type 19 143 -35 1129 245 68 85 chr9 68484425 68484943 -73786501 - LTR33A LTR ERVL -8 515 7 202 301 77 77 chr9 68485141 68485284 -73786160 - MIR3 SINE MIR -49 159 17 345 343 87 27 chr9 68486248 68486467 -73784977 - L2 LINE L2 -1 3271 3040 222 91 0 0 chr9 68486928 68486961 -73784483 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2102 136 0 13 chr9 68488009 68488319 -73783125 - AluSx SINE Alu -1 311 6 24 67 0 0 chr9 68489252 68489297 -73782147 + AT_rich Low_complexity Low_complexity 1 45 0 569 275 65 31 chr9 68490570 68490799 -73780645 + MIR SINE MIR 6 242 -20 571 228 29 47 chr9 68491309 68491480 -73779964 - MIR SINE MIR -1 261 94 1039 189 0 0 chr9 68491482 68491651 -73779793 + FRAM SINE Alu 1 167 -9 382 220 110 34 chr9 68491653 68491771 -73779673 - MIR SINE MIR -134 128 2 209 208 62 0 chr9 68492319 68492367 -73779077 + L2 LINE L2 3222 3272 0 552 330 129 41 chr9 68492732 68493770 -73777674 + L2 LINE L2 2038 3179 -93 281 89 22 0 chr9 68493775 68493820 -73777624 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 367 269 55 21 chr9 68494158 68494303 -73777141 - L1ME4a LINE L1 -11 6110 5961 207 209 47 0 chr9 68495422 68495465 -73775979 - MER91A DNA MER1_type -13 177 133 336 263 29 126 chr9 68495497 68495672 -73775772 - MER91A DNA MER1_type -36 160 3 197 132 226 0 chr9 68495836 68495889 -73775555 - L2 LINE L2 0 3272 3208 296 206 32 0 chr9 68495936 68495999 -73775445 - Zaphod DNA AcHobo -1 4030 3966 3735 197 26 9 chr9 68496130 68496897 -73774547 - L1 LINE L1 -780 5366 4587 853 290 140 58 chr9 68497057 68497967 -73773477 + L2 LINE L2 2232 3308 -5 315 0 0 0 chr9 68498392 68498427 -73773017 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 313 214 0 67 chr9 68499089 68499178 -73772266 + L2 LINE L2 3231 3313 0 362 278 163 32 chr9 68499894 68500268 -73771176 + L1ME4a LINE L1 5693 6115 -6 386 313 66 1 chr9 68500882 68501018 -73770426 - MIR SINE MIR -57 151 45 25 0 0 0 chr9 68501524 68501549 -73769895 + AT_rich Low_complexity Low_complexity 1 25 0 311 0 0 25 chr9 68501809 68501849 -73769595 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 3418 238 73 50 chr9 68502023 68503115 -73768329 + L2 LINE L2 1793 2910 -404 213 260 20 0 chr9 68503116 68503166 -73768278 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 368 224 27 109 chr9 68503184 68503367 -73768077 + L2 LINE L2 3146 3313 0 2368 61 3 10 chr9 68503461 68503785 -73767659 + AluY SINE Alu 1 311 0 198 194 0 0 chr9 68503794 68503830 -73767614 + L2 LINE L2 3274 3309 -4 322 333 64 89 chr9 68503948 68504398 -73767046 - L2 LINE L2 0 3272 2834 210 128 0 0 chr9 68505604 68505643 -73765801 + (TG)n Simple_repeat Simple_repeat 1 39 0 261 0 0 0 chr9 68507736 68507765 -73763679 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2179 120 0 13 chr9 68508307 68508623 -73762821 + AluSx SINE Alu 1 312 0 34 24 0 0 chr9 68509741 68509782 -73761662 + AT_rich Low_complexity Low_complexity 1 41 0 567 221 27 47 chr9 68509842 68509991 -73761453 + MIR SINE MIR 117 262 0 310 290 115 60 chr9 68510154 68510423 -73761021 + L3 LINE CR1 1209 1492 -85 191 263 35 0 chr9 68510426 68510483 -73760961 - MIR SINE MIR -34 228 170 720 227 41 23 chr9 68510523 68510695 -73760749 + MIR SINE MIR 67 241 -21 676 329 98 33 chr9 68512183 68512633 -73758811 - L2 LINE L2 -375 2939 2461 267 358 138 50 chr9 68512899 68513522 -73757922 - L2 LINE L2 -389 2925 2248 183 80 0 0 chr9 68516143 68516168 -73755276 + (CCG)n Simple_repeat Simple_repeat 1 25 0 194 211 28 99 chr9 68517079 68517150 -73754294 - L2 LINE L2 0 3313 3248 288 291 23 12 chr9 68517268 68517354 -73754090 - L2 LINE L2 -280 3033 2947 21 0 0 0 chr9 68518585 68518606 -73752838 + AT_rich Low_complexity Low_complexity 1 21 0 479 278 101 22 chr9 68518895 68519122 -73752322 + MIR SINE MIR 8 252 -10 242 292 81 57 chr9 68520373 68520431 -73751013 - HAL1 LINE L1 -767 1740 1685 4750 169 39 24 chr9 68520431 68521339 -73750105 + L1MD2 LINE L1 5439 6359 0 242 292 81 57 chr9 68521339 68521489 -73749955 - HAL1 LINE L1 -822 1685 1527 213 174 0 22 chr9 68521489 68521535 -73749909 + MIR3 SINE MIR 161 205 -3 2034 155 3 0 chr9 68521701 68522005 -73749439 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr9 68522727 68522755 -73748689 + AT_rich Low_complexity Low_complexity 1 28 0 2988 143 11 11 chr9 68523059 68523514 -73747930 + L1PA15 LINE L1 5711 6165 0 184 250 0 0 chr9 68523848 68523888 -73747556 - L2 LINE L2 -9 3263 3224 287 298 81 66 chr9 68524014 68524673 -73746771 - L2 LINE L2 -231 3041 2358 1018 205 77 40 chr9 68526846 68527132 -73744312 + L1MA6 LINE L1 5985 6284 -16 2047 95 4 0 chr9 68527132 68527394 -73744050 + L1PB3 LINE L1 5892 6154 0 1018 205 77 40 chr9 68527394 68527405 -73744039 + L1MA6 LINE L1 6284 6293 -7 2352 77 7 0 chr9 68527449 68527746 -73743698 + AluY SINE Alu 1 299 -12 213 226 118 78 chr9 68527999 68528101 -73743343 - L2 LINE L2 -14 3258 3153 1025 254 93 38 chr9 68528263 68528824 -73742620 + L2 LINE L2 2617 3220 -93 184 229 0 0 chr9 68528812 68528847 -73742597 + MIR SINE MIR 218 252 -10 * 183 349 120 29 chr9 68528885 68529060 -73742384 - L2 LINE L2 -337 2977 2787 444 57 0 5 chr9 68529060 68529121 -73742323 - L1MA2 LINE L1 -349 5951 5893 505 337 181 16 chr9 68529138 68529440 -73742004 - L2 LINE L2 -582 2732 2481 778 252 5 58 chr9 68529440 68529528 -73741916 + MER91A DNA MER1_type 2 93 -103 2333 91 3 0 chr9 68529528 68529826 -73741618 - AluY SINE Alu -12 299 1 778 252 5 58 chr9 68529826 68529943 -73741501 + MER91A DNA MER1_type 93 196 0 505 337 181 16 chr9 68529943 68530142 -73741302 - L2 LINE L2 -833 2481 2148 428 232 28 84 chr9 68530894 68531001 -73740443 + MIR SINE MIR 47 146 -116 2552 56 0 3 chr9 68531001 68531303 -73740141 + AluY SINE Alu 1 301 -10 428 232 28 84 chr9 68531303 68531337 -73740107 + MIR SINE MIR 146 180 -82 933 284 41 0 chr9 68531428 68531671 -73739773 - MIR SINE MIR -3 259 7 393 271 94 22 chr9 68532216 68532397 -73739047 - L1ME4a LINE L1 -44 6077 5884 1919 127 17 20 chr9 68532514 68532806 -73738638 + AluJb SINE Alu 1 291 -21 304 325 62 95 chr9 68532858 68533427 -73738017 + L1ME LINE L1 3850 4399 -1747 431 246 84 88 chr9 68533551 68534269 -73737175 + L1ME LINE L1 4398 5112 -1034 2193 118 0 13 chr9 68534335 68534640 -73736804 + AluSx SINE Alu 1 301 -11 2439 85 0 0 chr9 68534871 68535178 -73736266 - AluSg SINE Alu -3 307 1 382 308 88 62 chr9 68535338 68535598 -73735846 + L1ME LINE L1 5399 5665 -456 198 0 0 0 chr9 68536812 68536834 -73734610 + (A)n Simple_repeat Simple_repeat 1 22 0 590 322 59 17 chr9 68537288 68537524 -73733920 - MIR SINE MIR -5 257 12 1637 191 0 20 chr9 68538584 68538883 -73732561 - AluJo SINE Alu -19 293 1 49 18 0 0 chr9 68539980 68540036 -73731408 + AT_rich Low_complexity Low_complexity 1 56 0 195 342 54 36 chr9 68540307 68540418 -73731026 - L2 LINE L2 -9 3263 3151 242 191 0 44 chr9 68540892 68540960 -73730484 - L1MC4 LINE L1 -1330 6712 6648 1091 210 188 49 chr9 68541764 68541843 -73729601 - L1MC5 LINE L1 -58 7903 7836 219 36 0 0 chr9 68541843 68541871 -73729573 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1091 210 188 49 chr9 68541871 68542449 -73728995 - L1MC5 LINE L1 -125 7836 7154 244 228 0 18 chr9 68542486 68542543 -73728901 + L2 LINE L2 3258 3313 0 2369 105 3 0 chr9 68543655 68543961 -73727483 + AluSp SINE Alu 1 307 -6 1798 159 33 0 chr9 68544176 68544452 -73726992 + AluJb SINE Alu 5 289 -23 234 275 37 46 chr9 68544579 68544688 -73726756 + L2 LINE L2 2521 2628 -686 604 248 105 50 chr9 68545072 68545310 -73726134 - MIR SINE MIR -3 259 9 2368 88 0 3 chr9 68546997 68547334 -73724110 + AluY SINE Alu 1 311 0 706 246 40 6 chr9 68547578 68547753 -73723691 - MIR SINE MIR -1 261 81 2379 87 0 0 chr9 68549156 68549454 -73721990 + AluSg SINE Alu 1 298 -12 764 212 158 5 chr9 68549631 68549834 -73721610 + MIR SINE MIR 12 245 -17 2246 134 0 0 chr9 68550648 68550954 -73720490 - AluSx SINE Alu -6 306 1 2423 86 7 0 chr9 68551356 68551660 -73719784 - AluSp SINE Alu -7 306 1 1994 157 39 33 chr9 68551711 68552196 -73719248 + Charlie1b DNA MER1_type 35 522 -1 477 327 66 88 chr9 68552680 68553148 -73718296 + L2 LINE L2 2815 3272 0 275 215 0 62 chr9 68553578 68553643 -73717801 - L2 LINE L2 0 3313 3253 198 0 0 0 chr9 68553696 68553718 -73717726 + (TTA)n Simple_repeat Simple_repeat 1 22 0 909 329 81 50 chr9 68553719 68554505 -73716939 - L2 LINE L2 -565 2749 1914 2393 109 0 0 chr9 68554505 68554817 -73716627 + AluSx SINE Alu 1 312 0 909 329 81 50 chr9 68554817 68555190 -73716254 - L2 LINE L2 -1400 1914 1554 288 77 0 0 chr9 68555638 68555677 -73715767 + (TG)n Simple_repeat Simple_repeat 1 39 0 735 168 143 6 chr9 68555858 68556019 -73715425 + MER20 DNA MER1_type 37 219 0 284 341 59 44 chr9 68556151 68556242 -73715202 + L2 LINE L2 1964 2052 -1262 1980 135 7 0 chr9 68556242 68556568 -73714876 - AluSx SINE Alu 0 328 1 284 341 59 44 chr9 68556568 68556748 -73714696 + L2 LINE L2 2052 2240 -1074 183 114 0 0 chr9 68557164 68557199 -73714245 + (A)n Simple_repeat Simple_repeat 1 35 0 435 266 44 0 chr9 68557660 68557773 -73713671 - MER5A DNA MER1_type -5 184 67 220 289 66 66 chr9 68557672 68557824 -73713620 + MER5A DNA MER1_type 30 181 -8 * 675 257 106 28 chr9 68558041 68558259 -73713185 - MIR SINE MIR 0 262 28 480 253 68 12 chr9 68558297 68558459 -73712985 - MIR SINE MIR -69 193 23 1902 122 53 28 chr9 68558810 68559170 -73712274 + L1MA8 LINE L1 5920 6288 -3 211 300 66 16 chr9 68559877 68560002 -73711442 - MIR SINE MIR -70 138 62 343 259 0 65 chr9 68560370 68560478 -73710966 + L2 LINE L2 2687 2787 -527 21 0 0 0 chr9 68560741 68560762 -73710682 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr9 68562834 68562858 -73708586 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 33 0 0 0 chr9 68563435 68563468 -73707976 + AT_rich Low_complexity Low_complexity 1 33 0 797 154 0 0 chr9 68563468 68563585 -73707859 - FLAM_C SINE Alu -16 117 1 1025 191 38 14 chr9 68563585 68563795 -73707649 - MER58A DNA MER1_type -6 218 4 2196 138 6 18 chr9 68563808 68564149 -73707295 - MER1B DNA MER1_type 0 337 1 385 307 65 52 chr9 68564730 68564961 -73706483 + MIR SINE MIR 20 253 -9 419 183 130 17 chr9 68565564 68565679 -73705765 - L1MA10 LINE L1 -14 6320 6193 24 77 0 0 chr9 68566759 68566811 -73704633 + AT_rich Low_complexity Low_complexity 1 52 0 1001 139 0 19 chr9 68566960 68567118 -73704326 - AluSg/x SINE Alu -8 304 150 840 179 36 0 chr9 68567415 68567583 -73703861 - MER5A DNA MER1_type 0 189 16 555 111 139 0 chr9 68568609 68568717 -73702727 - L1MB3 LINE L1 -4 6179 6057 471 263 68 47 chr9 68568928 68569118 -73702326 - MER117 DNA MER1_type -1 196 3 285 215 0 0 chr9 68569593 68569658 -73701786 - L1MB8 LINE L1 -3 6175 6111 821 118 7 7 chr9 68569668 68569812 -73701632 - L1MA8 LINE L1 -4 6287 6144 893 166 116 21 chr9 68569813 68570054 -73701390 - L1MA4 LINE L1 0 6300 6037 2355 109 0 0 chr9 68570054 68570366 -73701078 - AluSx SINE Alu 0 312 1 515 199 43 19 chr9 68570411 68570572 -73700872 - L1MC5 LINE L1 -188 7773 7609 369 0 0 0 chr9 68571597 68571638 -73699806 + (CA)n Simple_repeat Simple_repeat 2 42 0 357 185 0 15 chr9 68574078 68574143 -73697301 + L2 LINE L2 3209 3272 0 261 0 0 0 chr9 68574327 68574356 -73697088 + (T)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr9 68574694 68574715 -73696729 + AT_rich Low_complexity Low_complexity 1 21 0 211 273 0 0 chr9 68575200 68575255 -73696189 + (CA)n Simple_repeat Simple_repeat 2 56 0 190 308 26 26 chr9 68575779 68575857 -73695587 + MIR SINE MIR 9 86 -176 1627 135 0 13 chr9 68576134 68576371 -73695073 + AluJb SINE Alu 73 306 -6 902 294 138 14 chr9 68576387 68576944 -73694500 + L1MC4a LINE L1 5314 5939 -1869 602 261 27 16 chr9 68577066 68577254 -73694190 - AluJo SINE Alu -118 194 5 1802 177 160 40 chr9 68577563 68578014 -73693430 - MLT1D LTR MaLR 0 505 1 541 261 103 55 chr9 68578108 68578418 -73693026 - L2 LINE L2 -1 3312 2988 183 281 88 0 chr9 68578460 68578517 -73692927 - L2 LINE L2 -61 3252 3191 866 140 122 12 chr9 68578797 68578961 -73692483 + MLT1D LTR MaLR 324 505 0 1084 321 131 7 chr9 68579098 68579699 -73691745 - L2 LINE L2 -668 2646 1971 433 259 114 12 chr9 68579863 68580118 -73691326 + L1ME4a LINE L1 5801 6081 -40 1908 187 3 0 chr9 68580431 68580731 -73690713 + AluJb SINE Alu 3 303 -9 243 0 0 0 chr9 68580804 68580831 -73690613 + (TAA)n Simple_repeat Simple_repeat 1 27 0 340 346 74 30 chr9 68581920 68582151 -73689293 - MLT1J2 LTR MaLR -15 435 195 854 260 95 82 chr9 68582183 68582613 -73688831 + LTR33 LTR ERVL 2 441 -80 1942 55 0 13 chr9 68582613 68582848 -73688596 - L1PA8 LINE L1 0 6172 5941 854 260 95 82 chr9 68582848 68582920 -73688524 + LTR33 LTR ERVL 441 511 -10 1131 153 62 14 chr9 68584335 68584544 -73686900 + MER20 DNA MER1_type 1 219 0 390 290 124 26 chr9 68584694 68584887 -73686557 + MLT1J LTR MaLR 263 474 -37 752 288 68 55 chr9 68585122 68585221 -73686223 - L1ME4a LINE L1 -107 6014 5918 1804 141 53 3 chr9 68585221 68585505 -73685939 + AluJb SINE Alu 1 298 -14 752 288 68 55 chr9 68585505 68586016 -73685428 - L1ME4a LINE L1 -203 5918 5373 483 304 18 2 chr9 68586761 68586904 -73684540 - MIR SINE MIR -61 147 9 459 0 0 0 chr9 68587421 68587472 -73683972 + (CA)n Simple_repeat Simple_repeat 2 52 0 201 245 330 0 chr9 68588787 68588893 -73682551 - MIR SINE MIR -16 246 106 357 341 0 8 chr9 68589689 68589818 -73681626 + MIR3 SINE MIR 67 194 -14 1025 208 37 37 chr9 68592063 68592279 -73679165 - MER20 DNA MER1_type 0 219 4 256 294 139 33 chr9 68592849 68593029 -73678415 + MIR3 SINE MIR 7 205 -3 781 213 67 88 chr9 68593970 68594299 -73677145 + MLT1D LTR MaLR 2 323 -182 216 379 0 0 chr9 68595773 68595860 -73675584 - MIR SINE MIR -108 154 68 3126 183 31 0 chr9 68596396 68596484 -73674960 + L1 LINE L1 4739 4823 -1346 234 0 0 0 chr9 68596484 68596510 -73674934 + (CA)n Simple_repeat Simple_repeat 2 27 0 3126 183 31 0 chr9 68596510 68597040 -73674404 + L1 LINE L1 4823 5379 -790 1745 182 3 7 chr9 68597040 68597342 -73674102 + AluJb SINE Alu 1 301 -11 420 335 69 30 chr9 68597727 68597930 -73673514 + MIR SINE MIR 22 232 -30 2398 104 0 0 chr9 68598008 68598316 -73673128 - AluSx SINE Alu -4 308 1 216 200 0 0 chr9 68598378 68598433 -73673011 + CT-rich Low_complexity Low_complexity 2 56 0 387 60 0 0 chr9 68598433 68598483 -73672961 + (CA)n Simple_repeat Simple_repeat 1 50 0 711 219 16 0 chr9 68598828 68598951 -73672493 + FLAM_A SINE Alu 1 125 -8 21 0 0 0 chr9 68598951 68598972 -73672472 + AT_rich Low_complexity Low_complexity 1 21 0 2112 92 0 18 chr9 68599243 68599527 -73671917 + AluSx SINE Alu 30 308 -4 2142 100 14 0 chr9 68599831 68600122 -73671322 + AluSx SINE Alu 1 295 -17 410 185 50 42 chr9 68601222 68601341 -73670103 + L1ME4a LINE L1 5724 5843 -278 1585 201 34 44 chr9 68601442 68601781 -73669663 + L1M4 LINE L1 2701 3037 -3109 2170 106 43 7 chr9 68601781 68602082 -73669362 + AluSx SINE Alu 1 312 0 1585 201 34 44 chr9 68602082 68602155 -73669289 + L1M4 LINE L1 3037 3109 -3037 308 223 117 0 chr9 68602141 68602244 -73669200 + L1ME4a LINE L1 5982 6096 -25 * 1039 236 135 70 chr9 68602439 68603251 -73668193 - L1ME4a LINE L1 -4 6117 5255 1967 161 10 0 chr9 68603445 68603744 -73667700 - AluSx SINE Alu -10 302 1 351 162 103 0 chr9 68603909 68603977 -73667467 + HsTC2 DNA Tc2 1824 1898 0 5038 159 51 38 chr9 68604094 68604211 -73667233 - L1MB7 LINE L1 0 6184 6070 2089 121 3 10 chr9 68604211 68604520 -73666924 - AluSx SINE Alu 0 312 2 5038 159 51 38 chr9 68604520 68606088 -73665356 - L1MB7 LINE L1 -114 6070 4490 297 265 49 59 chr9 68606124 68606328 -73665116 - L1ME4a LINE L1 -1083 5063 4862 2259 105 0 7 chr9 68606531 68606835 -73664609 + AluSg SINE Alu 1 302 -8 235 211 58 0 chr9 68606960 68607012 -73664432 + MIR SINE MIR 73 127 -135 26 74 0 0 chr9 68608159 68608213 -73663231 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr9 68608519 68608548 -73662896 + AT_rich Low_complexity Low_complexity 1 29 0 2104 117 0 4 chr9 68608561 68608842 -73662602 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr9 68608844 68608865 -73662579 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 233 274 0 0 chr9 68609042 68609093 -73662351 + (CA)n Simple_repeat Simple_repeat 2 52 0 945 65 0 0 chr9 68609249 68609356 -73662088 - U6 snRNA snRNA 0 107 1 854 228 71 49 chr9 68609545 68609869 -73661575 - L1ME4a LINE L1 -1977 4169 3839 12853 84 13 1 chr9 68610282 68612032 -73659412 - L1P LINE L1 -2289 3857 2087 1099 215 97 99 chr9 68612033 68612529 -73658915 - MLT1E2 LTR MaLR -157 492 1 1413 181 4 16 chr9 68614555 68614798 -73656646 + MLT1D LTR MaLR 1 240 -265 484 110 0 14 chr9 68614798 68614871 -73656573 + L1MA3 LINE L1 6197 6268 -37 243 88 0 0 chr9 68615830 68615864 -73655580 + (TGG)n Simple_repeat Simple_repeat 1 34 0 324 181 120 30 chr9 68616200 68616333 -73655111 - LTR67 LTR ERVL -2 555 411 186 133 0 0 chr9 68617032 68617062 -73654382 + (A)n Simple_repeat Simple_repeat 1 30 0 2099 101 7 10 chr9 68618526 68618822 -73652622 - AluSx SINE Alu -17 295 1 587 258 77 16 chr9 68618963 68619145 -73652299 - MIR SINE MIR 0 262 70 25 31 0 0 chr9 68619339 68619371 -73652073 + AT_rich Low_complexity Low_complexity 1 32 0 2164 86 30 23 chr9 68619767 68620070 -73651374 - AluY SINE Alu -6 305 1 656 251 38 0 chr9 68620204 68620387 -73651057 + MIR SINE MIR 67 256 -6 1718 156 39 3 chr9 68621726 68621842 -73649602 + AluJo SINE Alu 1 111 -201 204 40 0 0 chr9 68621842 68621867 -73649577 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1718 156 39 3 chr9 68621867 68622033 -73649411 + AluJo SINE Alu 111 293 -19 235 359 0 0 chr9 68622699 68622763 -73648681 + MER5A DNA MER1_type 108 171 -18 2407 163 7 10 chr9 68623032 68623436 -73648008 - MER57A LTR ERV1 0 403 1 4425 232 87 95 chr9 68625105 68626908 -73644536 - HAL1 LINE L1 -2 2505 720 1780 165 37 3 chr9 68626908 68627205 -73644239 + AluJb SINE Alu 1 307 -5 4425 232 87 95 chr9 68627205 68627519 -73643925 - HAL1 LINE L1 -1787 720 405 558 271 50 18 chr9 68627522 68627743 -73643701 - HAL1 LINE L1 -2262 245 18 261 318 45 36 chr9 68627755 68627865 -73643579 - MIR SINE MIR -68 140 30 246 313 0 0 chr9 68629253 68629336 -73642108 - MIR SINE MIR -27 235 153 1995 137 10 0 chr9 68629563 68629863 -73641581 + AluSx SINE Alu 1 303 -9 713 230 69 95 chr9 68630343 68630755 -73640689 - MLT1L LTR MaLR -33 565 111 1457 213 78 47 chr9 68630784 68631231 -73640213 - MER39 LTR ERV1 -3 704 244 2108 136 3 0 chr9 68631239 68631547 -73639897 - AluJb SINE Alu -3 309 1 247 191 60 60 chr9 68631623 68631707 -73639737 - MLT1L LTR MaLR -529 86 3 29 0 0 0 chr9 68632025 68632054 -73639390 + AT_rich Low_complexity Low_complexity 1 29 0 2908 254 123 41 chr9 68632770 68634296 -73637148 - HAL1 LINE L1 -38 2469 819 2882 7 0 0 chr9 68634303 68634608 -73636836 + AluYb8 SINE Alu 1 305 -13 1010 199 35 22 chr9 68634619 68634845 -73636599 + L1MB8 LINE L1 5944 6172 -6 1778 236 79 32 chr9 68634855 68635423 -73636021 - HAL1 LINE L1 -1685 822 228 486 234 42 115 chr9 68636489 68636606 -73634838 - MER45A DNA AcHobo -1403 178 79 2166 124 0 0 chr9 68636606 68636897 -73634547 + AluSx SINE Alu 12 302 -10 486 234 42 115 chr9 68636897 68636971 -73634473 - MER45A DNA AcHobo -1502 79 1 287 328 145 17 chr9 68637973 68638208 -73633236 + L3 LINE CR1 1310 1574 -3 310 279 163 7 chr9 68638476 68638623 -73632821 + MIR SINE MIR 68 237 -25 2203 117 0 26 chr9 68639058 68639367 -73632077 + AluSx SINE Alu 1 301 -11 2160 152 176 141 chr9 68639374 68639611 -73631833 + L1MC3 LINE L1 6850 7077 -708 287 300 30 0 chr9 68639611 68639711 -73631733 + MLT1F1 LTR MaLR 37 139 -428 2160 152 176 141 chr9 68639711 68640113 -73631331 + L1MC3 LINE L1 7077 7614 -171 242 313 43 0 chr9 68640956 68641071 -73630373 - L2 LINE L2 -3 3310 3191 250 319 28 21 chr9 68641435 68641576 -73629868 + MIR SINE MIR 48 189 -73 2055 113 57 0 chr9 68641612 68641895 -73629549 + AluSx SINE Alu 1 299 -13 30 0 0 0 chr9 68642070 68642100 -73629344 + AT_rich Low_complexity Low_complexity 1 30 0 218 261 42 78 chr9 68642356 68642461 -73628983 + MIR SINE MIR 81 181 -81 2589 53 0 0 chr9 68642461 68642764 -73628680 + AluY SINE Alu 1 303 -8 218 261 42 78 chr9 68642764 68642800 -73628644 + MIR SINE MIR 181 217 -45 400 357 7 7 chr9 68643386 68643529 -73627915 - MIR3 SINE MIR -46 162 20 6852 58 11 0 chr9 68644348 68645746 -73625698 - L1PA7 LINE L1 0 6154 4769 1732 147 0 15 chr9 68645772 68646031 -73625413 + AluSx SINE Alu 40 294 -18 377 115 0 0 chr9 68646578 68646639 -73624805 + Alu SINE Alu 242 302 0 1900 139 29 0 chr9 68647270 68647544 -73623900 - AluJb SINE Alu -30 282 1 205 156 0 0 chr9 68647730 68647762 -73623682 + MER5A DNA MER1_type 157 188 -1 1854 169 7 0 chr9 68648459 68648743 -73622701 - AluJb SINE Alu -26 286 1 2784 134 49 9 chr9 68648966 68649414 -73622030 - MLT1C LTR MaLR -1 466 1 254 276 66 55 chr9 68649717 68649898 -73621546 - MIR3 SINE MIR -7 201 19 2203 149 3 20 chr9 68649950 68650293 -73621151 - MER1B DNA MER1_type 0 337 1 1342 173 8 16 chr9 68650614 68650862 -73620582 + AluSx SINE Alu 1 246 -66 24 0 0 0 chr9 68651901 68651925 -73619519 + GC_rich Low_complexity Low_complexity 1 24 0 209 230 14 40 chr9 68652169 68652243 -73619201 + G-rich Low_complexity Low_complexity 4 75 0 739 151 19 141 chr9 68652968 68653085 -73618359 + L1MB3 LINE L1 5993 6123 -60 3208 145 24 112 chr9 68653085 68653270 -73618174 - LTR8 LTR ERV1 0 691 491 2103 96 16 13 chr9 68653270 68653573 -73617871 - AluSq SINE Alu -9 304 1 3208 145 24 112 chr9 68653573 68654145 -73617299 - LTR8 LTR ERV1 -200 491 1 739 151 19 141 chr9 68654145 68654181 -73617263 + L1MB3 LINE L1 6123 6162 -21 2513 67 0 6 chr9 68654181 68654494 -73616950 + AluY SINE Alu 1 311 0 2023 116 10 23 chr9 68654504 68654807 -73616637 + AluSx SINE Alu 1 299 -13 739 151 19 141 chr9 68654807 68654847 -73616597 + L1MB3 LINE L1 6130 6173 -10 2166 119 7 0 chr9 68654982 68655276 -73616168 + AluSg SINE Alu 1 296 -14 2287 77 0 89 chr9 68655594 68655930 -73615514 + AluSg1 SINE Alu 1 306 -3 2007 127 3 10 chr9 68656102 68656401 -73615043 + AluSx SINE Alu 2 298 -14 632 182 68 30 chr9 68656440 68656554 -73614890 + AluSq/x SINE Alu 14 135 -177 2108 116 17 0 chr9 68656554 68656856 -73614588 + AluSg SINE Alu 1 307 -3 632 182 68 30 chr9 68656856 68656873 -73614571 + AluSq/x SINE Alu 135 150 -162 616 128 0 49 chr9 68656995 68657097 -73614347 + AluSg/x SINE Alu 177 273 -39 2162 108 10 3 chr9 68657239 68657546 -73613898 - AluY SINE Alu -2 309 1 1215 216 36 89 chr9 68657602 68658143 -73613301 + L1MC5 LINE L1 6558 6984 -824 2485 69 0 3 chr9 68658283 68658589 -73612855 + AluSg SINE Alu 1 305 -5 1187 115 0 5 chr9 68658600 68658809 -73612635 + AluSq SINE Alu 1 303 -10 225 271 102 8 chr9 68659080 68659198 -73612246 + LTR16C LTR ERVL 361 489 -2 951 228 73 96 chr9 68659213 68659587 -73611857 + L1MC5 LINE L1 7074 7455 -506 1851 171 10 3 chr9 68659587 68659897 -73611547 + AluJb SINE Alu 1 312 0 951 228 73 96 chr9 68659897 68659945 -73611499 + L1MC5 LINE L1 7455 7503 -458 2037 116 61 0 chr9 68659945 68660239 -73611205 + AluSp SINE Alu 1 312 -1 951 228 73 96 chr9 68660239 68660346 -73611098 + L1MC5 LINE L1 7503 7592 -369 2395 91 0 3 chr9 68660494 68660801 -73610643 - AluSx SINE Alu -6 306 1 2166 109 0 19 chr9 68660801 68661113 -73610331 - AluY SINE Alu -3 308 2 2135 118 13 3 chr9 68661114 68661418 -73610026 - AluSx SINE Alu -1 311 5 763 160 32 0 chr9 68661999 68662124 -73609320 - FLAM_A SINE Alu -4 129 1 2483 57 0 7 chr9 68662134 68662434 -73609010 - AluY SINE Alu -13 298 1 254 275 17 50 chr9 68662563 68662641 -73608803 + L1ME LINE L1 5613 5687 -434 1886 103 32 0 chr9 68662641 68662714 -73608730 + AluSq SINE Alu 50 119 -194 180 0 0 0 chr9 68662714 68662734 -73608710 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1886 103 32 0 chr9 68662734 68662913 -73608531 + AluSq SINE Alu 119 310 -3 254 275 17 50 chr9 68662913 68662954 -73608490 + L1ME LINE L1 5687 5728 -393 21 57 0 0 chr9 68663177 68663212 -73608232 + AT_rich Low_complexity Low_complexity 1 35 0 402 248 8 32 chr9 68663440 68663565 -73607879 - L1ME3A LINE L1 -219 5951 5830 2131 129 0 0 chr9 68663565 68663879 -73607565 - AluSg SINE Alu 0 315 2 195 23 93 23 chr9 68663886 68663929 -73607515 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1953 140 3 14 chr9 68663995 68664312 -73607132 - AluSx SINE Alu 0 314 1 201 74 0 0 chr9 68664684 68664711 -73606733 + (TC)n Simple_repeat Simple_repeat 1 27 0 2061 119 3 7 chr9 68664711 68665005 -73606439 - AluSp SINE Alu -15 298 6 2159 114 10 0 chr9 68665191 68665498 -73605946 - AluSp SINE Alu -3 310 1 1870 108 46 0 chr9 68666577 68666836 -73604608 - AluY SINE Alu -7 304 34 1968 111 45 0 chr9 68667023 68667311 -73604133 + AluY SINE Alu 1 301 -10 1818 155 7 13 chr9 68667322 68667626 -73603818 + AluJb SINE Alu 1 302 -10 210 255 194 31 chr9 68668102 68668200 -73603244 + L2 LINE L2 3200 3313 0 327 286 62 71 chr9 68668263 68668383 -73603061 - L1ME3A LINE L1 -343 5778 5659 2228 107 3 3 chr9 68668383 68668681 -73602763 - AluSx SINE Alu -14 298 1 327 286 62 71 chr9 68668681 68668784 -73602660 - L1ME3A LINE L1 -462 5659 5557 1139 130 19 0 chr9 68668788 68668950 -73602494 + AluSp SINE Alu 136 300 -13 4864 18 0 0 chr9 68669062 68669571 -73601873 - SVA Other Other -5 1381 873 2041 78 45 4 chr9 68669571 68669838 -73601606 - AluY SINE Alu -32 279 1 200 204 0 0 chr9 68670162 68670206 -73601238 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 865 157 0 0 chr9 68671137 68671271 -73600173 + AluJo SINE Alu 1 134 -178 2237 103 3 0 chr9 68671271 68671579 -73599865 + AluSp SINE Alu 1 309 0 249 191 137 53 chr9 68671639 68671770 -73599674 - L1ME4a LINE L1 -109 6012 5871 856 75 0 0 chr9 68671950 68672056 -73599388 - AluY SINE Alu -3 308 203 1315 105 0 17 chr9 68672229 68672392 -73599052 + AluSg/x SINE Alu 121 285 -25 221 0 35 0 chr9 68672392 68672421 -73599023 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 5434 131 32 13 chr9 68672421 68672816 -73598628 + L1PA16 LINE L1 4649 5035 -1131 2026 121 30 7 chr9 68672816 68673113 -73598331 + AluSx SINE Alu 1 304 -8 5434 131 32 13 chr9 68673113 68674226 -73597218 + L1PA16 LINE L1 5035 6165 -1 1315 105 0 17 chr9 68674226 68674242 -73597202 + AluSg/x SINE Alu 283 298 -12 932 152 0 0 chr9 68674446 68674578 -73596866 - AluJb SINE Alu -28 284 153 519 232 69 102 chr9 68674585 68675017 -73596427 + HAL1 LINE L1 1043 1519 -988 1972 209 41 41 chr9 68675038 68675580 -73595864 + MER34 LTR ERV1 1 542 0 661 265 83 40 chr9 68675654 68675941 -73595503 + HAL1 LINE L1 2012 2320 -187 2229 124 0 0 chr9 68675941 68676239 -73595205 - AluSx SINE Alu -14 298 1 661 265 83 40 chr9 68676239 68676324 -73595120 + HAL1 LINE L1 2320 2400 -107 1446 179 92 2 chr9 68676342 68676780 -73594664 + LTR54 LTR ERV1 1 496 -2 2342 122 0 0 chr9 68676816 68677128 -73594316 + AluSx SINE Alu 1 312 0 22 0 0 0 chr9 68677227 68677249 -73594195 + AT_rich Low_complexity Low_complexity 1 22 0 2393 92 0 0 chr9 68677354 68677647 -73593797 + AluSx SINE Alu 11 303 -9 1526 150 29 83 chr9 68677690 68677828 -73593616 + Charlie1 DNA MER1_type 2343 2487 -274 4388 132 50 17 chr9 68677828 68678527 -73592917 - MER72 LTR ERV1 0 722 1 1526 150 29 83 chr9 68678527 68678557 -73592887 + Charlie1 DNA MER1_type 2487 2517 -244 1682 142 84 37 chr9 68678557 68678880 -73592564 + MER61A LTR ERV1 4 341 -2 1526 150 29 83 chr9 68678880 68678953 -73592491 + Charlie1 DNA MER1_type 2517 2592 -169 2347 160 25 2 chr9 68678953 68679346 -73592098 + MER57A LTR ERV1 1 402 -1 1526 150 29 83 chr9 68679346 68679379 -73592065 + Charlie1 DNA MER1_type 2592 2625 -136 1945 156 3 29 chr9 68679379 68679687 -73591757 - AluJb SINE Alu -12 300 1 1526 150 29 83 chr9 68679687 68679829 -73591615 + Charlie1 DNA MER1_type 2625 2739 -22 324 70 0 0 chr9 68680056 68680099 -73591345 + (TTCTCC)n Simple_repeat Simple_repeat 3 45 0 1989 119 0 4 chr9 68680099 68680376 -73591068 - AluY SINE Alu -34 277 2 2915 16 0 0 chr9 68680382 68680693 -73590751 - AluYb8 SINE Alu -7 311 1 1178 79 0 0 chr9 68680695 68680835 -73590609 - AluSq/x SINE Alu -173 140 1 1273 231 110 70 chr9 68680876 68681404 -73590040 - MER41C LTR ERV1 -5 549 1 2503 68 91 20 chr9 68681464 68681816 -73589628 + MER51B LTR ERV1 1 377 0 234 229 29 14 chr9 68682741 68682811 -73588633 + C-rich Low_complexity Low_complexity 3 73 0 22 56 0 0 chr9 68683089 68683125 -73588319 + AT_rich Low_complexity Low_complexity 1 36 0 195 100 0 0 chr9 68683313 68683343 -73588101 + (TG)n Simple_repeat Simple_repeat 1 30 0 395 268 127 28 chr9 68683528 68683670 -73587774 - L2 LINE L2 0 3272 3117 2074 87 19 35 chr9 68683787 68684098 -73587346 + AluSq SINE Alu 1 306 -7 4351 76 4 2 chr9 68684283 68684836 -73586608 - MER41A LTR ERV1 0 554 1 2012 119 27 0 chr9 68685382 68685676 -73585768 + AluSx SINE Alu 1 302 -10 671 209 47 74 chr9 68685780 68685886 -73585558 + MER63A DNA MER1_type 2 101 -1587 528 239 9 0 chr9 68685886 68685999 -73585445 - MER81 DNA DNA 0 114 1 671 209 47 74 chr9 68685999 68686107 -73585337 + MER63A DNA MER1_type 101 210 0 1914 193 34 48 chr9 68686189 68686441 -73585003 - MLT1C LTR MaLR 0 467 222 2163 122 0 0 chr9 68686441 68686753 -73584691 - AluSx SINE Alu 0 312 1 1914 193 34 48 chr9 68686753 68686940 -73584504 - MLT1C LTR MaLR -245 222 34 1671 180 0 33 chr9 68686941 68687126 -73584318 - AluJo SINE Alu -16 296 123 1761 141 3 42 chr9 68687126 68687438 -73584006 + AluSx SINE Alu 1 300 -12 1671 180 0 33 chr9 68687438 68687558 -73583886 - AluJo SINE Alu -189 123 1 1140 97 0 0 chr9 68687567 68687722 -73583722 - AluSg/x SINE Alu -2 310 156 842 167 177 74 chr9 68687729 68687944 -73583500 - SATR1 Satellite Satellite -44 426 190 255 279 15 15 chr9 68687947 68688015 -73583429 - AluJ/FLAM SINE Alu -233 69 2 533 291 104 5 chr9 68688143 68688363 -73583081 - L2 LINE L2 -6 3307 3066 500 118 24 0 chr9 68688363 68688448 -73582996 + CT-rich Low_complexity Low_complexity 4 90 0 648 95 0 171 chr9 68688462 68688531 -73582913 - L1MB3 LINE L1 -3 6180 6150 2003 117 0 3 chr9 68688531 68688836 -73582608 + AluSg SINE Alu 1 304 0 648 95 0 171 chr9 68688836 68688923 -73582521 - L1MB3 LINE L1 -33 6150 6050 368 321 27 9 chr9 68688931 68689043 -73582401 - L2 LINE L2 -240 3073 2960 2421 71 0 3 chr9 68689604 68689912 -73581532 - AluSx SINE Alu -5 307 1 851 249 73 23 chr9 68690478 68690739 -73580705 - MER46C DNA MER2_type 0 338 65 1246 102 17 0 chr9 68690887 68691064 -73580380 + AluSg/x SINE Alu 131 310 -2 1956 133 3 0 chr9 68691289 68691582 -73579862 + AluSx SINE Alu 1 294 -18 2145 124 7 0 chr9 68692313 68692619 -73578825 + AluSx SINE Alu 1 308 -4 28 48 0 0 chr9 68692621 68692663 -73578781 + AT_rich Low_complexity Low_complexity 1 42 0 1910 146 3 13 chr9 68692666 68692981 -73578463 + AluJb SINE Alu 1 312 0 221 119 0 71 chr9 68693028 68693070 -73578374 - L2 LINE L2 -8 3305 3267 1932 101 0 0 chr9 68693356 68693674 -73577770 - AluY SINE Alu 0 331 14 1767 97 0 0 chr9 68693875 68694112 -73577332 + AluSq SINE Alu 70 306 -7 447 154 0 13 chr9 68694117 68694195 -73577249 - L1P LINE L1 -1537 4609 4533 198 376 64 18 chr9 68694208 68694317 -73577127 - L2 LINE L2 -26 3246 3133 421 258 39 16 chr9 68694697 68694825 -73576619 - L2 LINE L2 -3 3310 3180 181 303 146 38 chr9 68695225 68695410 -73576034 - L2 LINE L2 -615 2699 2495 316 286 0 62 chr9 68695455 68695567 -73575877 - MER91C DNA MER1_type -35 105 1 2084 108 7 0 chr9 68695784 68696072 -73575372 - AluSq SINE Alu -23 290 1 2243 83 0 0 chr9 68696508 68696798 -73574646 + AluSg1 SINE Alu 1 290 -19 1365 175 100 4 chr9 68697726 68697995 -73573449 + AluJb SINE Alu 12 306 -6 1911 127 0 7 chr9 68698237 68698544 -73572900 - AluSx SINE Alu 0 305 1 770 203 0 0 chr9 68698968 68699101 -73572343 - FLAM_A SINE Alu 0 133 1 906 123 96 0 chr9 68699186 68699332 -73572112 - AluSg/x SINE Alu -16 296 137 2056 102 3 3 chr9 68699504 68699818 -73571626 - AluSx SINE Alu 0 314 1 332 257 53 88 chr9 68699937 68700108 -73571336 - MIR3 SINE MIR 0 208 44 206 163 0 23 chr9 68700840 68700883 -73570561 + A-rich Low_complexity Low_complexity 1 42 0 1078 152 20 35 chr9 68701489 68701629 -73569815 - L1MB5 LINE L1 -9 6165 6027 1295 176 162 10 chr9 68701629 68701925 -73569519 + MER2 DNA MER2_type 3 343 -1 1078 152 20 35 chr9 68701925 68701982 -73569462 - L1MB5 LINE L1 -147 6027 5971 228 189 0 38 chr9 68702269 68702322 -73569122 - L2 LINE L2 -181 3091 3041 691 188 0 0 chr9 68702757 68702874 -73568570 + FLAM_C SINE Alu 9 125 -18 36 23 0 0 chr9 68702874 68702917 -73568527 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr9 68702981 68703011 -73568433 + AT_rich Low_complexity Low_complexity 1 30 0 1930 151 0 0 chr9 68703468 68703767 -73567677 - AluJb SINE Alu -7 305 7 1973 138 7 3 chr9 68704333 68704638 -73566806 - AluSx SINE Alu -6 306 1 325 283 85 9 chr9 68705656 68705762 -73565682 + L2 LINE L2 3136 3249 -23 190 342 125 8 chr9 68705764 68705884 -73565560 + MIR3 SINE MIR 54 187 -21 192 40 0 0 chr9 68706081 68706106 -73565338 + (TTG)n Simple_repeat Simple_repeat 2 26 0 27 0 0 0 chr9 68706832 68706859 -73564585 + AT_rich Low_complexity Low_complexity 1 27 0 1730 149 10 7 chr9 68708162 68708458 -73562986 - AluJb SINE Alu -15 297 1 797 196 0 0 chr9 68708466 68708599 -73562845 - AluJo SINE Alu -178 134 2 1762 159 23 0 chr9 68709738 68710040 -73561404 + AluJb SINE Alu 1 309 -3 399 256 153 23 chr9 68710213 68710428 -73561016 - MIR SINE MIR 0 262 20 1523 141 36 49 chr9 68710503 68710808 -73560636 - AluJo SINE Alu -11 301 1 957 171 68 22 chr9 68710818 68711040 -73560404 - L1MB2 LINE L1 0 6171 5940 287 130 43 29 chr9 68711090 68711159 -73560285 - L1MB2 LINE L1 -224 5959 5890 1488 203 14 0 chr9 68711309 68711605 -73559839 + AluJb SINE Alu 1 300 -12 638 183 30 0 chr9 68711610 68711741 -73559703 - L1MB7 LINE L1 -55 6129 5995 3390 36 0 17 chr9 68711785 68712199 -73559245 + L1PA3 LINE L1 5748 6154 -1 2425 44 0 10 chr9 68713334 68713632 -73557812 - AluY SINE Alu -16 295 1 286 371 42 6 chr9 68713821 68713988 -73557456 - MIR SINE MIR -56 206 34 2082 115 3 19 chr9 68714013 68714327 -73557117 + AluSx SINE Alu 1 309 -3 1795 121 108 82 chr9 68714424 68714625 -73556819 + MER57A LTR ERV1 1 195 -208 2381 73 0 0 chr9 68714625 68714927 -73556517 - AluY SINE Alu -4 307 6 1795 121 108 82 chr9 68714927 68715114 -73556330 + MER57A LTR ERV1 195 399 -4 475 274 53 98 chr9 68715711 68715977 -73555467 - L2 LINE L2 -2 3270 3017 1059 176 29 24 chr9 68716435 68716636 -73554808 + MER72 LTR ERV1 1 202 -520 313 105 18 105 chr9 68716636 68716693 -73554751 + AluSx SINE Alu 1 42 -257 1996 106 3 7 chr9 68716695 68716978 -73554466 + AluSx SINE Alu 21 302 -10 594 160 66 9 chr9 68716983 68717089 -73554355 + MER72 LTR ERV1 206 317 -405 699 198 0 0 chr9 68717089 68717210 -73554234 - FRAM SINE Alu -27 149 29 957 223 74 40 chr9 68717242 68717538 -73553906 + MER49 LTR ERV1 599 904 -19 1785 141 18 0 chr9 68717540 68717823 -73553621 + AluJo SINE Alu 1 288 -24 42 0 0 0 chr9 68717840 68717882 -73553562 + AT_rich Low_complexity Low_complexity 1 42 0 2038 143 0 0 chr9 68717926 68718234 -73553210 + AluSx SINE Alu 2 309 -3 1911 129 18 0 chr9 68718912 68719224 -73552220 + AluSx SINE Alu 1 317 0 1888 122 24 0 chr9 68719419 68719706 -73551738 + AluSx SINE Alu 1 294 -18 532 217 59 69 chr9 68719706 68719928 -73551516 + MER5B DNA MER1_type 6 152 -26 330 235 139 17 chr9 68720067 68720182 -73551262 - MIR3 SINE MIR -79 129 1 447 106 0 0 chr9 68720184 68720250 -73551194 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 590 93 0 0 chr9 68720250 68720325 -73551119 - AluSg/x SINE Alu -32 278 204 21 82 0 0 chr9 68720625 68720674 -73550770 + AT_rich Low_complexity Low_complexity 1 49 0 749 166 115 19 chr9 68720702 68720859 -73550585 - FRAM SINE Alu -4 172 1 2509 56 0 0 chr9 68720877 68721182 -73550262 + AluY SINE Alu 1 305 -6 2018 121 3 13 chr9 68721263 68721570 -73549874 + AluSx SINE Alu 1 304 -8 2166 93 0 13 chr9 68721572 68721873 -73549571 + AluSq SINE Alu 1 297 -16 1419 166 64 4 chr9 68722338 68722629 -73548815 + AluJb SINE Alu 1 307 0 2319 71 3 0 chr9 68722640 68722935 -73548509 + AluSp SINE Alu 1 296 -17 273 240 40 0 chr9 68722937 68723012 -73548432 + L1ME4a LINE L1 5498 5575 -587 1849 218 40 91 chr9 68723118 68723241 -73548203 + L1ME3A LINE L1 5514 5642 -528 1883 9 0 18 chr9 68723241 68723461 -73547983 - AluY SINE Alu -11 300 85 1849 218 40 91 chr9 68723461 68724020 -73547424 + L1ME3A LINE L1 5642 6161 -9 1108 191 30 4 chr9 68724027 68724258 -73547186 + L1MB7 LINE L1 5945 6181 -3 2150 100 10 3 chr9 68725261 68725562 -73545882 - AluSq SINE Alu -10 303 1 2087 109 10 0 chr9 68725867 68726160 -73545284 + AluSx SINE Alu 1 296 -16 423 52 0 0 chr9 68726504 68726562 -73544882 + (TG)n Simple_repeat Simple_repeat 2 59 0 486 210 50 8 chr9 68726786 68726905 -73544539 + MLT1J2 LTR MaLR 41 164 -286 580 257 41 12 chr9 68727167 68727338 -73544106 + L1ME4a LINE L1 5716 5891 -230 1363 182 92 154 chr9 68727596 68728245 -73543199 + LTR36 LTR ERV1 1 609 -2 2077 83 36 7 chr9 68728261 68728563 -73542881 - AluSx SINE Alu -1 311 1 632 212 141 5 chr9 68728657 68728841 -73542603 - MER3 DNA MER1_type 0 209 1 297 289 56 0 chr9 68729572 68729662 -73541782 - MIR SINE MIR -21 241 147 2381 218 77 26 chr9 68729665 68729863 -73541581 + MER82 DNA MER2_type 8 195 -458 1624 153 0 65 chr9 68729863 68730002 -73541442 + AluJo SINE Alu 1 148 -164 1852 150 3 0 chr9 68730002 68730289 -73541155 + AluSx SINE Alu 1 288 -24 1624 153 0 65 chr9 68730289 68730470 -73540974 + AluJo SINE Alu 148 300 -12 2381 218 77 26 chr9 68730470 68730885 -73540559 + MER82 DNA MER2_type 195 652 -1 610 115 62 26 chr9 68730894 68731007 -73540437 - MIR SINE MIR -122 140 24 2157 103 10 0 chr9 68731623 68731924 -73539520 - AluSg SINE Alu -6 304 1 586 309 106 16 chr9 68732273 68732642 -73538802 + L1ME3A LINE L1 5527 5928 -242 1832 143 113 0 chr9 68732832 68733160 -73538284 - MLT1A1 LTR MaLR 0 365 1 2234 64 0 0 chr9 68733188 68733497 -73537947 - AluY SINE Alu 0 310 2 2415 123 95 5 chr9 68733739 68734130 -73537314 + MSTC LTR MaLR 1 426 -2 615 184 9 0 chr9 68734471 68734580 -73536864 + Charlie5 DNA MER1_type 2 111 -2501 2315 77 0 10 chr9 68734615 68734914 -73536530 - AluSx SINE Alu -16 296 1 920 184 101 73 chr9 68734914 68735113 -73536331 + Charlie5 DNA MER1_type 2253 2468 -156 1592 110 35 0 chr9 68735113 68735341 -73536103 - AluSq SINE Alu -77 236 1 920 184 101 73 chr9 68735341 68735499 -73535945 + Charlie5 DNA MER1_type 2468 2620 -4 1975 79 75 0 chr9 68735933 68736212 -73535232 + AluSp SINE Alu 1 300 -13 1833 94 3 123 chr9 68736401 68736743 -73534701 - AluSx SINE Alu -1 301 1 263 299 0 0 chr9 68736762 68736829 -73534615 - Charlie8 DNA MER1_type -2312 105 39 442 332 9 59 chr9 68737174 68737394 -73534050 - MIR SINE MIR -45 217 9 220 118 20 20 chr9 68737487 68737538 -73533906 + (CA)n Simple_repeat Simple_repeat 2 52 0 201 196 87 0 chr9 68738241 68738287 -73533157 - L2 LINE L2 0 3272 3223 759 212 60 18 chr9 68738463 68738680 -73532764 + MIR SINE MIR 35 260 -2 189 0 0 0 chr9 68738686 68738707 -73532737 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1811 38 4 42 chr9 68738707 68738947 -73532497 - AluY SINE Alu -32 279 49 1779 172 0 0 chr9 68738948 68739245 -73532199 - AluJb SINE Alu -15 297 1 1043 181 12 0 chr9 68739359 68739530 -73531914 + FAM SINE Alu 1 173 -2 862 112 62 96 chr9 68739921 68740099 -73531345 + MER20 DNA MER1_type 47 218 -1 2079 80 14 0 chr9 68740244 68740548 -73530896 - AluSq SINE Alu 0 312 5 1099 171 5 11 chr9 68740960 68741147 -73530297 + MER5A DNA MER1_type 4 189 0 184 314 124 32 chr9 68741192 68741377 -73530067 + L2 LINE L2 2686 2887 -427 1241 261 95 67 chr9 68741494 68741728 -73529716 + MLT1G1 LTR MaLR 1 227 -368 1792 156 3 41 chr9 68741728 68742048 -73529396 - AluJo SINE Alu -3 309 2 1241 261 95 67 chr9 68742048 68742392 -73529052 + MLT1G1 LTR MaLR 227 595 0 181 197 92 53 chr9 68742962 68743038 -73528406 - L2 LINE L2 -1593 1721 1643 2296 177 55 123 chr9 68743468 68744192 -73527252 + LTR8A LTR ERV1 34 708 -19 886 185 68 53 chr9 68744243 68744329 -73527115 - LTR37B LTR ERV1 -3 465 382 1894 186 10 47 chr9 68744329 68744441 -73527003 + MLT1B LTR MaLR 3 118 -272 2263 66 3 30 chr9 68744441 68744744 -73526700 + AluSx SINE Alu 1 295 -17 1894 186 10 47 chr9 68744744 68745034 -73526410 + MLT1B LTR MaLR 118 390 0 886 185 68 53 chr9 68745034 68745212 -73526232 - LTR37B LTR ERV1 -86 382 197 1528 109 23 0 chr9 68745248 68745468 -73525976 - AluSg/x SINE Alu -2 310 86 271 245 0 0 chr9 68745468 68745517 -73525927 - AluJ/monomer SINE Alu -250 52 4 25 0 0 0 chr9 68745520 68745545 -73525899 + AT_rich Low_complexity Low_complexity 1 25 0 991 179 22 49 chr9 68745628 68745674 -73525770 - MER20 DNA MER1_type 0 219 173 2093 162 21 3 chr9 68745674 68746014 -73525430 + MER7A DNA MER2_type 2 345 -1 991 179 22 49 chr9 68746014 68746191 -73525253 - MER20 DNA MER1_type -46 173 2 262 291 55 27 chr9 68746191 68746262 -73525182 - LTR37B LTR ERV1 -385 83 10 538 252 60 7 chr9 68746271 68746422 -73525022 + MIR SINE MIR 52 210 -52 2006 134 0 0 chr9 68747268 68747566 -73523878 - AluSx SINE Alu -14 298 1 315 245 38 66 chr9 68747926 68748032 -73523412 + MIR SINE MIR 87 189 -73 2174 113 0 3 chr9 68748096 68748396 -73523048 - AluSq SINE Alu -14 299 1 1006 162 17 6 chr9 68748544 68748717 -73522727 + AluJb SINE Alu 117 291 -21 1162 237 121 31 chr9 68748772 68749160 -73522284 + MLT1F LTR MaLR 1 423 -119 572 276 111 6 chr9 68749224 68749405 -73522039 - MIR SINE MIR -26 236 37 785 266 99 65 chr9 68749699 68750203 -73521241 + LTR33A LTR ERVL 1 521 -2 3217 131 14 73 chr9 68750382 68750515 -73520929 - MER4E LTR ERV1 0 779 640 1972 72 16 85 chr9 68750515 68750834 -73520610 - AluY SINE Alu -14 297 1 3217 131 14 73 chr9 68750834 68751242 -73520202 - MER4E LTR ERV1 -139 640 277 2136 81 0 39 chr9 68751242 68751549 -73519895 + AluSc SINE Alu 1 295 -14 3217 131 14 73 chr9 68751549 68751633 -73519811 - MER4E LTR ERV1 -502 277 190 * 3715 110 13 59 chr9 68751632 68752240 -73519204 + LTR8 LTR ERV1 112 691 0 1094 114 0 13 chr9 68752240 68752397 -73519047 - MER4D LTR ERV1 -717 155 1 2189 71 0 11 chr9 68752410 68752719 -73518725 - AluSc SINE Alu 0 307 2 542 280 91 62 chr9 68752719 68753058 -73518386 - L2 LINE L2 -4 3268 2920 241 119 24 0 chr9 68753508 68753550 -73517894 - Charlie8 DNA MER1_type -1001 1416 1374 340 266 81 102 chr9 68753555 68753938 -73517506 - Charlie8 DNA MER1_type -1995 422 48 806 194 27 70 chr9 68753981 68754102 -73517342 + MER5B DNA MER1_type 1 113 -65 2303 97 0 0 chr9 68754102 68754412 -73517032 - AluSx SINE Alu -2 310 1 806 194 27 70 chr9 68754412 68754476 -73516968 + MER5B DNA MER1_type 113 178 0 257 333 174 19 chr9 68755028 68755292 -73516152 + L2 LINE L2 2103 2407 -907 2386 70 3 0 chr9 68756082 68756384 -73515060 + AluSp SINE Alu 1 303 -10 2382 204 41 19 chr9 68758206 68758769 -73512675 + L1M4 LINE L1 2558 3132 -3014 1163 146 33 113 chr9 68758790 68758840 -73512604 - L1ME1 LINE L1 -21 6145 6093 2125 77 7 7 chr9 68758840 68759150 -73512294 - AluSq SINE Alu 0 310 1 1163 146 33 113 chr9 68759150 68759433 -73512011 - L1ME1 LINE L1 -73 6093 5838 602 175 0 0 chr9 68759433 68759530 -73511914 - AluJb SINE Alu -61 251 155 2260 93 0 0 chr9 68759720 68760020 -73511424 + AluSg SINE Alu 7 306 -4 21 0 0 0 chr9 68760042 68760063 -73511381 + AT_rich Low_complexity Low_complexity 1 21 0 2105 111 0 7 chr9 68760597 68760895 -73510549 + AluSx SINE Alu 1 296 -16 952 230 11 0 chr9 68761093 68761280 -73510164 + MER5A DNA MER1_type 1 189 0 209 238 0 0 chr9 68761289 68761331 -73510113 + A-rich Low_complexity Low_complexity 1 42 0 2223 91 0 0 chr9 68761572 68761859 -73509585 - AluSc SINE Alu -20 289 3 252 282 167 51 chr9 68762554 68762710 -73508734 + MIR SINE MIR 20 193 -69 2176 65 14 17 chr9 68762869 68763161 -73508283 - AluSp SINE Alu -22 291 1 797 258 40 41 chr9 68763438 68763457 -73507987 + L2 LINE L2 2767 2785 -528 2106 138 0 0 chr9 68763457 68763769 -73507675 + AluSx SINE Alu 1 312 0 2264 57 0 14 chr9 68763776 68764073 -73507371 + AluY SINE Alu 1 293 -18 797 258 40 41 chr9 68764073 68764363 -73507081 + L2 LINE L2 2791 3091 -222 2303 89 0 3 chr9 68764936 68765240 -73506204 - AluSq SINE Alu -10 303 1 1284 188 56 19 chr9 68765253 68765577 -73505867 - Charlie1b DNA MER1_type -144 379 44 205 241 193 12 chr9 68765662 68765745 -73505699 + MIR SINE MIR 47 144 -64 1331 178 0 40 chr9 68765798 68766073 -73505371 + AluJo SINE Alu 47 310 -2 292 74 74 0 chr9 68766073 68766127 -73505317 + GA-rich Low_complexity Low_complexity 2 59 0 204 125 0 0 chr9 68766126 68766158 -73505286 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 * 2414 77 3 0 chr9 68766422 68766733 -73504711 + AluSp SINE Alu 1 312 -1 1665 151 72 0 chr9 68768959 68769250 -73502194 - AluSx SINE Alu 0 312 1 1371 196 121 34 chr9 68769827 68770226 -73501218 - MLT1C LTR MaLR -15 410 6 274 208 19 0 chr9 68770431 68770484 -73500960 + MER5B DNA MER1_type 88 141 -37 1905 183 10 63 chr9 68771306 68771716 -73499728 - MLT1B LTR MaLR -2 388 1 1953 109 13 35 chr9 68771793 68772105 -73499339 - AluSx SINE Alu -7 305 1 1598 156 203 11 chr9 68772334 68772693 -73498751 - MSTA LTR MaLR 0 428 1 1887 156 0 0 chr9 68773601 68773903 -73497541 + AluSx SINE Alu 3 304 -8 36 62 0 0 chr9 68774868 68774932 -73496512 + AT_rich Low_complexity Low_complexity 1 64 0 393 70 0 0 chr9 68775212 68775269 -73496175 + (TG)n Simple_repeat Simple_repeat 2 58 0 2009 70 44 11 chr9 68776279 68776575 -73494869 - AluSp SINE Alu 0 307 3 205 342 13 13 chr9 68776594 68776670 -73494774 - L3 LINE CR1 -9 1568 1493 1629 151 60 37 chr9 68776772 68777071 -73494373 - AluJo SINE Alu -6 306 1 577 330 45 15 chr9 68777433 68777697 -73493747 - L3 LINE CR1 -287 1290 1019 320 313 36 54 chr9 68778355 68778474 -73492970 - MIR SINE MIR -73 189 72 2126 102 0 0 chr9 68778474 68778768 -73492676 + AluY SINE Alu 1 294 -17 320 313 36 54 chr9 68778768 68778814 -73492630 - MIR SINE MIR -190 72 27 728 304 89 20 chr9 68780266 68780624 -73490820 - MLT1I LTR MaLR 0 409 27 867 210 21 59 chr9 68781390 68781532 -73489912 - L1ME3 LINE L1 0 6162 6031 2301 83 0 3 chr9 68781532 68781834 -73489610 - AluSg SINE Alu -9 301 1 867 210 21 59 chr9 68781834 68781929 -73489515 - L1ME3 LINE L1 -131 6031 5934 1958 111 4 4 chr9 68781959 68782238 -73489206 - AluSx SINE Alu -11 301 23 24 32 0 0 chr9 68782444 68782475 -73488969 + AT_rich Low_complexity Low_complexity 1 31 0 1012 206 73 46 chr9 68782536 68782840 -73488604 - L1MD3 LINE L1 0 8041 7737 2203 133 14 11 chr9 68782840 68783194 -73488250 + THE1A LTR MaLR 1 355 0 1012 206 73 46 chr9 68783194 68783216 -73488228 - L1MD3 LINE L1 -304 7737 7717 2077 120 7 0 chr9 68783228 68783528 -73487916 - AluSx SINE Alu -10 302 1 180 0 0 0 chr9 68783533 68783553 -73487891 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 1953 133 3 0 chr9 68783553 68783839 -73487605 - AluSq SINE Alu -26 287 1 21 0 0 0 chr9 68783842 68783863 -73487581 + AT_rich Low_complexity Low_complexity 1 21 0 3325 185 53 14 chr9 68784324 68785016 -73486428 + L1ME3 LINE L1 5256 5974 -204 435 268 144 36 chr9 68785188 68785258 -73486186 + Charlie8 DNA MER1_type 1 62 -279 2281 99 0 0 chr9 68785258 68785561 -73485883 + AluSx SINE Alu 1 303 -9 435 268 144 36 chr9 68785561 68785740 -73485704 + Charlie8 DNA MER1_type 62 277 -64 217 304 58 0 chr9 68785822 68785891 -73485553 - MIR SINE MIR -85 123 51 520 243 53 48 chr9 68786535 68786724 -73484720 + MIR SINE MIR 21 210 -52 1258 167 4 21 chr9 68786748 68786988 -73484456 - AluJo SINE Alu -23 289 54 297 275 47 71 chr9 68787161 68787372 -73484072 - L2 LINE L2 -14 3299 3094 2080 104 7 17 chr9 68788037 68788335 -73483109 - AluSx SINE Alu -17 295 1 340 282 115 60 chr9 68789239 68789491 -73481953 - HAL1 LINE L1 -1 2506 2241 232 326 12 0 chr9 68789776 68789862 -73481582 - HAL1 LINE L1 -343 2164 2078 184 323 68 38 chr9 68790076 68790209 -73481235 + MIR SINE MIR 64 200 -62 408 220 18 18 chr9 68791834 68791943 -73479501 + L1M4 LINE L1 4958 5066 -1080 584 195 47 20 chr9 68791951 68792100 -73479344 + L1ME3 LINE L1 6003 6155 -7 199 274 59 0 chr9 68792155 68792206 -73479238 - L2 LINE L2 -2 3270 3217 2862 161 98 0 chr9 68792268 68792797 -73478647 + L1MA9 LINE L1 5732 6312 0 1951 105 27 7 chr9 68792863 68793157 -73478287 + AluSg SINE Alu 1 300 -10 2025 111 0 3 chr9 68795495 68795784 -73475660 - AluSx SINE Alu -15 297 10 441 230 28 28 chr9 68895977 68896155 -73375289 + (CCG)n Simple_repeat Simple_repeat 2 179 0 298 231 111 19 chr9 68896641 68896749 -73374695 + L2 LINE L2 3167 3284 -29 885 136 0 27 chr9 68897304 68897451 -73373993 - FLAM_C SINE Alu 0 143 1 204 40 0 0 chr9 68898207 68898232 -73373212 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 244 215 46 31 chr9 68898851 68898916 -73372528 - L1MC5 LINE L1 -182 7779 7714 614 218 61 57 chr9 68898971 68899200 -73372244 - L1MC5 LINE L1 -31 7930 7701 1753 155 102 29 chr9 68899308 68899689 -73371755 - L1MB8 LINE L1 -16 6162 5754 180 150 25 0 chr9 68901356 68901396 -73370048 + MIR SINE MIR 112 152 -56 2422 105 19 38 chr9 68902739 68902885 -73368559 - THE1B LTR MaLR 0 364 217 13421 43 1 1 chr9 68902885 68905269 -73366175 - L1PA5 LINE L1 0 6154 3771 2422 105 19 38 chr9 68905269 68905493 -73365951 - THE1B LTR MaLR -147 217 1 362 250 48 0 chr9 68905493 68905577 -73365867 - MLT1J LTR MaLR -423 88 1 501 274 73 12 chr9 68905580 68905920 -73365524 - L1M4 LINE L1 -2760 3386 3026 3539 207 87 22 chr9 68905949 68906722 -73364722 + MER21B LTR ERV1 40 862 -1 390 289 96 36 chr9 68906734 68907035 -73364409 - L1M4 LINE L1 -3148 2998 2680 23 54 0 0 chr9 68907069 68907106 -73364338 + AT_rich Low_complexity Low_complexity 1 37 0 265 213 127 13 chr9 68907205 68907355 -73364089 - L1M4 LINE L1 -3751 2395 2229 1570 195 19 7 chr9 68907360 68907668 -73363776 - AluJo SINE Alu 0 312 1 11163 124 23 5 chr9 68908105 68909929 -73361515 + L1MEc LINE L1 1888 4849 -1366 2345 86 6 22 chr9 68910481 68910796 -73360648 - AluSq SINE Alu -3 310 1 330 25 0 0 chr9 68911308 68911348 -73360096 - MADE1 DNA Mariner 0 80 41 2090 136 6 25 chr9 68911414 68911731 -73359713 - AluSx SINE Alu -1 311 1 287 273 188 17 chr9 68911861 68912037 -73359407 - HAL1b LINE L1 -18 1330 1125 1937 127 22 35 chr9 68912042 68912358 -73359086 - AluSx SINE Alu 0 312 1 1924 144 3 26 chr9 68912493 68912805 -73358639 - AluSq SINE Alu -8 305 1 227 218 115 0 chr9 68912836 68912914 -73358530 + LTR66 LTR ERVL 357 443 -167 1653 169 10 30 chr9 68912992 68913293 -73358151 - AluJo SINE Alu -17 295 1 339 322 70 16 chr9 68913406 68913664 -73357780 - L1ME4a LINE L1 -133 5988 5717 555 302 77 86 chr9 68913703 68914577 -73356867 + L2 LINE L2 1837 2702 -612 2514 72 0 3 chr9 68914935 68915239 -73356205 - AluSc SINE Alu -5 304 2 242 181 99 51 chr9 68915249 68915366 -73356078 - L1ME4a LINE L1 -506 5658 5535 217 283 0 0 chr9 68915398 68915444 -73356000 - L2 LINE L2 -12 3260 3215 1088 179 0 28 chr9 68915484 68915696 -73355748 + MER3 DNA MER1_type 2 207 -2 23 78 0 0 chr9 68915849 68915900 -73355544 + AT_rich Low_complexity Low_complexity 1 51 0 872 119 0 0 chr9 68915900 68916018 -73355426 - FLAM_C SINE Alu -15 118 1 23 97 0 0 chr9 68917287 68917359 -73354085 + GC_rich Low_complexity Low_complexity 1 72 0 194 203 169 0 chr9 68919075 68919134 -73352310 - L2 LINE L2 -16 3256 3188 1125 141 0 11 chr9 68920773 68920950 -73350494 - AluSg/x SINE Alu -1 311 137 21 36 0 0 chr9 68922105 68922133 -73349311 + AT_rich Low_complexity Low_complexity 1 28 0 2569 43 30 0 chr9 68922638 68922940 -73348504 - AluY SINE Alu 0 311 1 2329 103 0 3 chr9 68924378 68924689 -73346755 - AluSg SINE Alu 0 310 1 2213 112 3 29 chr9 68925926 68926238 -73345206 - AluSp SINE Alu -9 304 1 651 180 0 0 chr9 68926249 68926371 -73345073 - L1MB4 LINE L1 -3 6177 6056 1526 219 52 49 chr9 68926375 68926841 -73344603 - L1ME3 LINE L1 -60 6102 5636 22 56 0 0 chr9 68926854 68926890 -73344554 + AT_rich Low_complexity Low_complexity 1 36 0 1732 147 83 0 chr9 68926890 68927156 -73344288 - AluSx SINE Alu -24 288 1 306 239 73 37 chr9 68927187 68927296 -73344148 + MIR SINE MIR 31 143 -119 1551 236 104 95 chr9 68927764 68928582 -73342862 + HAL1 LINE L1 818 1627 -880 2333 100 0 10 chr9 68928582 68928893 -73342551 + AluSx SINE Alu 5 312 0 1551 236 104 95 chr9 68928893 68928905 -73342539 + HAL1 LINE L1 1627 1637 -870 2201 127 0 13 chr9 68928905 68929221 -73342223 + AluSx SINE Alu 1 312 0 1551 236 104 95 chr9 68929221 68929739 -73341705 + HAL1 LINE L1 1637 2180 -327 475 307 63 29 chr9 68929745 68929950 -73341494 + MLT1J LTR MaLR 3 214 -297 837 309 50 13 chr9 68930055 68930372 -73341072 + MLT1I LTR MaLR 81 409 0 385 138 270 81 chr9 68930442 68930616 -73340828 + HAL1 LINE L1 1672 1878 -629 335 268 89 24 chr9 68930648 68930816 -73340628 - HAL1 LINE L1 -340 2167 1989 356 286 45 23 chr9 68930823 68930956 -73340488 + MLT1J LTR MaLR 374 509 -2 502 224 29 107 chr9 68931019 68931291 -73340153 + HAL1 LINE L1 2257 2507 0 2246 125 32 46 chr9 68931554 68931923 -73339521 + THE1B LTR MaLR 1 364 0 375 298 113 57 chr9 68932106 68932354 -73339090 - L2 LINE L2 -11 3261 3000 2257 98 0 3 chr9 68932426 68932766 -73338678 + AluSx SINE Alu 1 339 0 1360 154 5 0 chr9 68932866 68933074 -73338370 + AluSg/x SINE Alu 88 296 -14 351 333 65 40 chr9 68933340 68933694 -73337750 - MLT1K LTR MaLR -225 363 1 2475 87 0 3 chr9 68933810 68934119 -73337325 - AluSq SINE Alu -5 308 1 396 286 143 0 chr9 68934977 68935145 -73336299 + MIR SINE MIR 63 254 -8 342 281 66 51 chr9 68935177 68935373 -73336071 + LTR16C LTR ERVL 284 482 -9 1217 208 85 69 chr9 68935796 68936096 -73335348 - MSTD LTR MaLR 0 396 86 2127 121 3 0 chr9 68936096 68936406 -73335038 - AluSx SINE Alu 0 311 1 1217 208 85 69 chr9 68936406 68936494 -73334950 - MSTD LTR MaLR -310 86 1 1293 284 77 40 chr9 68936755 68937023 -73334421 - MLT1G1 LTR MaLR 0 595 338 2185 123 13 0 chr9 68937023 68937331 -73334113 - AluSx SINE Alu 0 312 1 1293 284 77 40 chr9 68937331 68937636 -73333808 - MLT1G1 LTR MaLR -257 338 1 369 0 0 0 chr9 68938311 68938352 -73333092 + (TTA)n Simple_repeat Simple_repeat 3 43 0 3375 59 5 2 chr9 68938352 68938777 -73332667 - L1PA7 LINE L1 -18 6136 5711 461 50 61 20 chr9 68939124 68939223 -73332221 + CT-rich Low_complexity Low_complexity 4 106 0 519 125 125 0 chr9 68939335 68939423 -73332021 + AluSc SINE Alu 211 309 0 303 290 10 20 chr9 68940477 68940577 -73330867 - L2 LINE L2 -1 3312 3214 794 292 42 42 chr9 68940931 68941282 -73330162 + L1ME3A LINE L1 5586 5939 -231 502 180 20 0 chr9 68941282 68941382 -73330062 + L1MB2 LINE L1 6068 6169 -2 794 292 42 42 chr9 68941382 68941407 -73330037 + L1ME3A LINE L1 5938 5962 -208 2404 67 0 0 chr9 68941678 68942006 -73329438 + AluY SINE Alu 1 328 0 474 184 23 0 chr9 68942213 68942300 -73329144 + AluSg/x SINE Alu 211 299 -13 1984 130 0 42 chr9 68942536 68942844 -73328600 + AluSx SINE Alu 1 295 -17 293 102 0 85 chr9 68943281 68943340 -73328104 - FAM SINE Alu 0 179 126 1243 167 24 5 chr9 68943345 68943555 -73327889 - AluJo SINE Alu -98 214 1 2196 95 4 0 chr9 68943594 68943891 -73327553 + AluSg SINE Alu 6 303 0 416 263 155 52 chr9 68943904 68944323 -73327121 - L1MEd LINE L1 -5280 839 378 1392 162 117 11 chr9 68945975 68946240 -73325204 + AluJo SINE Alu 7 299 -13 841 224 35 57 chr9 68946242 68946559 -73324885 + L1MC5 LINE L1 7608 7917 -44 198 150 0 0 chr9 68947083 68947123 -73324321 + (TTA)n Simple_repeat Simple_repeat 3 42 0 184 314 0 0 chr9 68947301 68947352 -73324092 - MIR3 SINE MIR -41 167 117 1853 168 0 0 chr9 68948283 68948580 -73322864 - AluJb SINE Alu -15 297 1 891 160 10 87 chr9 68949256 68949318 -73322126 - L1MB8 LINE L1 -6 6172 6107 2122 127 7 3 chr9 68949318 68949625 -73321819 + AluJb SINE Alu 1 308 -4 891 160 10 87 chr9 68949625 68949768 -73321676 - L1MB8 LINE L1 -71 6107 5983 657 301 25 21 chr9 68950983 68951219 -73320225 + MIR SINE MIR 5 241 -21 1962 165 24 15 chr9 68951337 68951677 -73319767 - MER2 DNA MER2_type 0 344 2 366 148 0 0 chr9 68951754 68951808 -73319636 - Alu SINE Alu -246 54 1 180 0 0 0 chr9 68954386 68954406 -73317038 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr9 68955505 68955527 -73315917 + AT_rich Low_complexity Low_complexity 1 22 0 2292 97 0 3 chr9 68955530 68955819 -73315625 - AluSx SINE Alu -24 288 1 2108 146 3 26 chr9 68957335 68957388 -73314056 - L1MB3 LINE L1 0 6183 6130 1702 184 3 7 chr9 68957388 68957710 -73313734 - AluJb SINE Alu 0 312 1 2108 146 3 26 chr9 68957710 68958034 -73313410 - L1MB3 LINE L1 -53 6130 5815 2071 115 35 0 chr9 68958873 68959160 -73312284 - AluSg SINE Alu -13 297 1 480 129 0 0 chr9 68959861 68959931 -73311513 - AluSp/q SINE Alu -22 291 222 2238 100 7 3 chr9 68959986 68960275 -73311169 - AluSq SINE Alu -23 290 1 1153 268 120 26 chr9 68960520 68961015 -73310429 + L1MC4 LINE L1 7360 7928 -114 189 107 0 0 chr9 68961015 68961043 -73310401 + (TG)n Simple_repeat Simple_repeat 2 29 0 1153 268 120 26 chr9 68961043 68961171 -73310273 + L1MC4 LINE L1 7928 8042 0 895 155 173 126 chr9 68961515 68961793 -73309651 - AluJo SINE Alu -11 291 1 1700 189 66 83 chr9 68963328 68963555 -73307889 + MLT2B1 LTR ERVL 1 230 -290 2442 69 0 0 chr9 68963555 68963843 -73307601 + AluY SINE Alu 1 288 -23 306 0 0 0 chr9 68963847 68963881 -73307563 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1700 189 66 83 chr9 68963881 68964177 -73307267 + MLT2B1 LTR ERVL 233 520 0 347 125 0 16 chr9 68964745 68964809 -73306635 + (GAAA)n Simple_repeat Simple_repeat 1 63 0 2311 84 0 14 chr9 68965389 68965686 -73305758 - AluSx SINE Alu -19 293 1 1898 124 55 0 chr9 68967778 68968068 -73303376 + AluSx SINE Alu 1 306 -6 186 43 0 0 chr9 68968150 68968173 -73303271 + (CA)n Simple_repeat Simple_repeat 2 24 0 425 268 89 16 chr9 68968353 68968543 -73302901 - MIR SINE MIR -25 237 34 1334 152 58 55 chr9 68969379 68969688 -73301756 + L1MB7 LINE L1 5875 6184 0 748 244 71 36 chr9 68969703 68969928 -73301516 + MIR SINE MIR 29 261 -1 367 300 36 7 chr9 68969935 68970075 -73301369 - MIR SINE MIR -106 156 13 891 157 6 47 chr9 68970165 68970337 -73301107 + FRAM SINE Alu 1 165 -1 322 320 54 35 chr9 68970621 68970824 -73300620 - MIR SINE MIR -7 255 49 317 254 212 17 chr9 68971454 68971572 -73299872 + MER5A DNA MER1_type 47 187 -2 900 178 59 12 chr9 68971624 68971793 -73299651 + MER3 DNA MER1_type 1 130 -79 264 269 75 0 chr9 68971794 68971887 -73299557 - L1ME LINE L1 -338 5783 5684 1964 146 20 0 chr9 68973076 68973371 -73298073 + AluJb SINE Alu 1 301 -11 207 138 52 69 chr9 68973934 68973992 -73297452 + MIR SINE MIR 151 207 -55 786 196 0 0 chr9 68973992 68974125 -73297319 - FLAM_A SINE Alu 0 133 1 2258 112 0 3 chr9 68974254 68974550 -73296894 + AluSx SINE Alu 1 295 -17 610 229 30 75 chr9 68975505 68975706 -73295738 - L1ME LINE L1 -392 5729 5538 442 168 15 38 chr9 68975719 68975850 -73295594 + CT-rich Low_complexity Low_complexity 2 129 0 680 141 39 39 chr9 68975878 68976006 -73295438 - FLAM_C SINE Alu -1 132 5 1468 174 94 66 chr9 68977081 68977444 -73294000 - MLT2D LTR ERVL -41 373 1 1811 156 16 41 chr9 68977613 68977928 -73293516 - AluJb SINE Alu -5 307 1 2314 104 0 3 chr9 68977990 68978289 -73293155 + AluSq SINE Alu 6 303 -10 26 50 0 0 chr9 68978346 68978386 -73293058 + AT_rich Low_complexity Low_complexity 1 40 0 2237 109 0 0 chr9 68978740 68979034 -73292410 + AluSx SINE Alu 1 294 -18 2230 126 3 0 chr9 68979045 68979355 -73292089 + AluSq SINE Alu 1 311 -2 1267 206 103 41 chr9 68979390 68979486 -73291958 + MER2 DNA MER2_type 1 90 -255 1609 175 48 10 chr9 68979486 68979778 -73291666 + AluJo SINE Alu 1 303 -9 1267 206 103 41 chr9 68979778 68980001 -73291443 + MER2 DNA MER2_type 90 340 -5 652 289 4 38 chr9 68980629 68980868 -73290576 + MIR SINE MIR 18 248 -14 182 341 55 0 chr9 68981067 68981158 -73290286 + L2 LINE L2 2673 2768 -546 2421 85 0 7 chr9 68981175 68981482 -73289962 - AluSc SINE Alu -4 305 1 398 226 15 83 chr9 68981552 68981685 -73289759 + MLT1H LTR MaLR 23 146 -403 462 259 17 9 chr9 68981749 68981865 -73289579 + MLT1H LTR MaLR 420 536 -13 381 93 0 0 chr9 68982168 68982222 -73289222 + (TCC)n Simple_repeat Simple_repeat 2 55 0 2227 100 0 0 chr9 68982222 68982502 -73288942 - AluSq SINE Alu -33 280 1 2062 150 0 0 chr9 68982935 68983222 -73288222 - AluSx SINE Alu -25 287 1 2198 96 17 20 chr9 68983423 68983725 -73287719 + AluSc SINE Alu 1 301 -8 2087 159 11 6 chr9 68983808 68984172 -73287272 + L1PA16 LINE L1 5798 6163 -3 1291 219 32 7 chr9 68984227 68984510 -73286934 - AluJb SINE Alu -10 302 13 715 223 7 14 chr9 68984615 68984763 -73286681 + FRAM SINE Alu 23 169 -7 25 65 0 0 chr9 68985379 68985425 -73286019 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr9 68985791 68985814 -73285630 + AT_rich Low_complexity Low_complexity 1 23 0 2251 118 0 6 chr9 68985814 68986127 -73285317 - AluSx SINE Alu -1 311 1 1077 203 113 34 chr9 68986269 68986535 -73284909 + AluJo SINE Alu 7 293 -19 2463 74 3 0 chr9 68987807 68988105 -73283339 - AluSp SINE Alu -14 299 1 343 234 43 21 chr9 68988260 68988354 -73283090 + AluY SINE Alu 203 298 -3 807 239 59 89 chr9 68988380 68988852 -73282592 - L1MC4 LINE L1 -60 7982 7525 2296 100 0 0 chr9 68990166 68990455 -73280989 - AluSg SINE Alu -21 289 1 215 235 288 15 chr9 68990975 68991107 -73280337 + MER5A DNA MER1_type 22 189 0 25 0 0 0 chr9 68991374 68991399 -73280045 + AT_rich Low_complexity Low_complexity 1 25 0 2074 144 14 14 chr9 68991826 68992180 -73279264 + L1PA16 LINE L1 5804 6157 -9 342 237 0 0 chr9 68992189 68992286 -73279158 + (TA)n Simple_repeat Simple_repeat 2 98 0 586 179 17 34 chr9 68993517 68993634 -73277810 - FAM SINE Alu -70 115 1 417 216 29 0 chr9 68994684 68994786 -73276658 + MIR SINE MIR 47 151 -111 1212 56 0 7 chr9 68997037 68997181 -73274263 + AluY SINE Alu 1 143 -168 186 43 0 0 chr9 68997200 68997223 -73274221 + (A)n Simple_repeat Simple_repeat 1 23 0 734 267 101 31 chr9 68997452 68997607 -73273837 - L1ME4a LINE L1 -276 5845 5702 2234 126 0 0 chr9 68997607 68997917 -73273527 - AluSx SINE Alu -2 310 1 734 267 101 31 chr9 68997917 68998283 -73273161 - L1ME4a LINE L1 -419 5702 5258 1219 246 72 26 chr9 68998754 68999073 -73272371 + ERVL LTR ERVL 1844 2182 -3582 2344 156 38 28 chr9 68999073 68999235 -73272209 + MSTB LTR MaLR 1 160 -266 2085 117 3 27 chr9 68999235 68999533 -73271911 - AluSx SINE Alu -17 295 5 2344 156 38 28 chr9 68999533 68999792 -73271652 + MSTB LTR MaLR 160 426 0 1219 246 72 26 chr9 68999792 68999821 -73271623 + ERVL LTR ERVL 2182 2208 -3556 225 211 0 0 chr9 68999843 68999900 -73271544 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 336 256 47 0 chr9 68999973 69000059 -73271385 - MIR SINE MIR 0 262 173 1492 201 12 42 chr9 69000716 69001005 -73270439 + L1MB5 LINE L1 5852 6132 -42 2158 123 0 0 chr9 69001005 69001335 -73270109 + AluSx SINE Alu 1 330 0 1492 201 12 42 chr9 69001335 69001377 -73270067 + L1MB5 LINE L1 6132 6174 0 2242 75 45 0 chr9 69001419 69001711 -73269733 - AluSp SINE Alu -8 305 1 23 0 0 0 chr9 69001719 69001742 -73269702 + AT_rich Low_complexity Low_complexity 1 23 0 656 304 29 8 chr9 69001743 69001986 -73269458 - MIR SINE MIR -7 255 8 278 293 102 6 chr9 69002119 69002276 -73269168 - MIR SINE MIR -62 146 23 460 90 70 50 chr9 69002452 69002552 -73268892 + MER4C LTR ERV1 1 102 -363 929 198 76 123 chr9 69002644 69003088 -73268356 + LTR34 LTR ERV1 136 664 -35 525 13 13 26 chr9 69003215 69003291 -73268153 + (TTAGGG)n Simple_repeat Simple_repeat 2 76 0 362 106 0 15 chr9 69003408 69003474 -73267970 + (CCTAA)n Simple_repeat Simple_repeat 4 68 0 269 306 215 0 chr9 69003827 69003971 -73267473 - MER102a DNA MER1_type 0 330 156 894 135 0 0 chr9 69003977 69004110 -73267334 - AluSg/x SINE Alu -8 302 170 341 70 0 0 chr9 69004110 69004153 -73267291 - AluSp/q SINE Alu -100 203 161 1915 138 7 10 chr9 69004959 69005264 -73266180 - AluSx SINE Alu -8 304 1 2288 101 0 23 chr9 69005276 69005584 -73265860 - AluSx SINE Alu -11 301 1 2281 94 0 7 chr9 69005591 69005889 -73265555 - AluSx SINE Alu -16 296 1 1863 126 29 7 chr9 69006701 69006978 -73264466 + AluJo SINE Alu 1 283 -29 201 147 0 0 chr9 69006983 69007017 -73264427 + (CACG)n Simple_repeat Simple_repeat 2 35 0 200 159 0 23 chr9 69007148 69007192 -73264252 + CT-rich Low_complexity Low_complexity 1 43 0 303 231 231 0 chr9 69007264 69007381 -73264063 + MIR SINE MIR 32 175 -87 1633 184 0 21 chr9 69007843 69008131 -73263313 - AluJo SINE Alu -20 292 11 299 275 17 33 chr9 69008173 69008293 -73263151 + L2 LINE L2 2856 2973 -341 181 297 226 19 chr9 69008331 69008486 -73262958 + L2 LINE L2 3125 3311 -2 181 347 0 0 chr9 69008513 69008562 -73262882 + L2 LINE L2 3111 3159 -113 194 149 287 35 chr9 69008982 69009069 -73262375 + L2 LINE L2 3200 3308 -5 2426 165 14 9 chr9 69009069 69009501 -73261943 + L1MB2 LINE L1 5652 6091 -80 1352 201 72 56 chr9 69009503 69009862 -73261582 - MLT1A1 LTR MaLR 0 365 1 2232 133 125 3 chr9 69009877 69010269 -73261175 - Tigger2 DNA MER2_type -6 2712 2273 395 143 16 0 chr9 69010259 69010322 -73261122 - Tigger2 DNA MER2_type -2649 69 6 * 346 149 30 0 chr9 69010322 69010389 -73261055 + L1MB2 LINE L1 6103 6171 0 31 0 0 0 chr9 69010744 69010775 -73260669 + AT_rich Low_complexity Low_complexity 1 31 0 1731 113 73 18 chr9 69010775 69011050 -73260394 - AluSq SINE Alu -23 290 1 2476 68 3 10 chr9 69011054 69011361 -73260083 - AluSx SINE Alu -6 306 2 360 59 0 0 chr9 69011361 69011412 -73260032 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 1799 126 3 55 chr9 69011414 69011707 -73259737 - AluSq SINE Alu -35 278 1 183 42 0 0 chr9 69012549 69012573 -73258871 + (A)n Simple_repeat Simple_repeat 1 24 0 2377 46 0 7 chr9 69013039 69013343 -73258101 - AluSc SINE Alu 0 302 1 645 197 61 35 chr9 69013608 69013806 -73257638 + L1ME3A LINE L1 5956 6158 -12 22 0 0 0 chr9 69014246 69014268 -73257176 + AT_rich Low_complexity Low_complexity 1 22 0 1441 181 46 16 chr9 69014275 69014578 -73256866 + L1MB8 LINE L1 5566 5877 -301 335 125 16 0 chr9 69014578 69014640 -73256804 + L1MA3 LINE L1 6241 6305 0 1827 144 6 30 chr9 69014640 69014971 -73256473 + L1MB8 LINE L1 5854 6178 0 1694 107 0 103 chr9 69015238 69015529 -73255915 - AluSg SINE Alu -13 297 37 228 263 75 38 chr9 69015760 69015893 -73255551 + MER5A DNA MER1_type 7 144 -45 194 224 165 0 chr9 69016129 69016214 -73255230 + MIR SINE MIR 49 147 -61 225 132 0 0 chr9 69016539 69016577 -73254867 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 360 64 0 0 chr9 69016828 69016845 -73254599 + (CA)n Simple_repeat Simple_repeat 1 64 0 360 64 0 0 chr9 69016845 69016892 -73254552 + (CA)n Simple_repeat Simple_repeat 2 48 0 236 29 0 29 chr9 69017408 69017442 -73254002 + (TG)n Simple_repeat Simple_repeat 2 34 0 2194 124 138 5 chr9 69018053 69018431 -73253013 + MSTA LTR MaLR 1 428 0 629 243 204 35 chr9 69019051 69019389 -73252055 + L2 LINE L2 2919 3313 0 234 205 8 172 chr9 69019423 69019545 -73251899 + MIR3 SINE MIR 88 189 -19 192 40 0 0 chr9 69019670 69019695 -73251749 + (TG)n Simple_repeat Simple_repeat 2 26 0 242 331 64 53 chr9 69020255 69020406 -73251038 - MIR SINE MIR -11 251 96 1801 137 3 25 chr9 69020406 69020691 -73250753 - AluJb SINE Alu -17 295 17 242 331 64 53 chr9 69020691 69020769 -73250675 - MIR SINE MIR -166 96 20 325 158 40 0 chr9 69021289 69021365 -73250079 + GA-rich Low_complexity Low_complexity 3 81 0 194 239 22 0 chr9 69021489 69021535 -73249909 - MIR SINE MIR -60 148 102 32 0 0 0 chr9 69022023 69022055 -73249389 + AT_rich Low_complexity Low_complexity 1 32 0 13180 114 32 8 chr9 69023816 69023986 -73247458 - Tigger1 DNA MER2_type 0 2418 2254 1704 141 6 98 chr9 69023986 69024312 -73247132 + AluJo SINE Alu 1 296 -16 13180 114 32 8 chr9 69024312 69026114 -73245330 - Tigger1 DNA MER2_type -164 2254 398 1168 140 0 0 chr9 69026144 69026322 -73245122 - AluJo/FRAM SINE Alu -3 309 132 309 188 12 8 chr9 69026322 69026384 -73245060 + AluJo SINE Alu 1 47 -255 3449 126 21 18 chr9 69026484 69027047 -73244397 - L1MB3 LINE L1 -1 6182 5618 2393 89 3 3 chr9 69027050 69027352 -73244092 - AluSx SINE Alu -10 302 1 663 245 33 5 chr9 69027414 69027598 -73243846 - L1MC5 LINE L1 -64 7897 7709 2027 116 14 14 chr9 69027719 69028040 -73243404 - AluSp SINE Alu 0 313 1 257 182 81 30 chr9 69028061 69028160 -73243284 - L1MC5 LINE L1 -37 7924 7821 347 153 0 17 chr9 69028644 69028703 -73242741 - MLT1J LTR MaLR -8 541 484 1533 247 111 13 chr9 69028746 69029207 -73242237 + HsTC2 DNA Tc2 4 509 -1389 338 213 53 43 chr9 69029207 69029301 -73242143 + HsTC2 DNA Tc2 1287 1557 -341 * 956 254 21 13 chr9 69029300 69029536 -73241908 - MLT1J LTR MaLR -22 489 252 1076 197 47 8 chr9 69029655 69029889 -73241555 + L1MB8 LINE L1 5935 6177 -1 979 198 0 80 chr9 69030282 69030519 -73240925 + AluJo SINE Alu 49 266 -46 294 29 0 0 chr9 69030526 69030561 -73240883 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2159 124 119 33 chr9 69030836 69031230 -73240214 + MSTA LTR MaLR 1 428 0 8840 179 56 3 chr9 69031230 69032784 -73238660 + MSTA-int LTR MaLR 1 1637 -14 1358 158 117 75 chr9 69032798 69032972 -73238472 + MSTA LTR MaLR 1 166 -209 315 0 0 0 chr9 69032972 69033007 -73238437 + (TC)n Simple_repeat Simple_repeat 2 36 0 1358 158 117 75 chr9 69033007 69033192 -73238252 + MSTA LTR MaLR 166 375 0 623 173 123 37 chr9 69033211 69033373 -73238071 - MER104 DNA MER2_type 0 180 5 26 30 0 0 chr9 69033816 69033849 -73237595 + AT_rich Low_complexity Low_complexity 1 33 0 1851 147 17 7 chr9 69034737 69035030 -73236414 + AluJb SINE Alu 1 296 -16 1923 145 45 0 chr9 69035044 69035375 -73236069 + L1MB2 LINE L1 5818 6163 -8 737 219 15 0 chr9 69035389 69035526 -73235918 + FAM SINE Alu 1 139 -46 314 313 148 0 chr9 69035706 69035834 -73235610 + MLT1I LTR MaLR 46 192 -217 392 330 16 49 chr9 69035976 69036161 -73235283 + MIR3 SINE MIR 4 182 -26 1637 196 65 56 chr9 69036325 69036770 -73234674 - MLT1C LTR MaLR -8 459 11 4383 116 18 8 chr9 69037750 69038379 -73233065 + MER41B LTR ERV1 1 635 0 5305 120 40 5 chr9 69038379 69039154 -73232290 + MER41B-int LTR ERV1 1 802 -5144 2912 103 34 14 chr9 69039156 69039823 -73231621 + MER41B-int LTR ERV1 1188 2017 -3929 1687 146 4 0 chr9 69039821 69040074 -73231370 + MER41B-int LTR ERV1 2783 3036 -4501 * 2791 115 31 10 chr9 69040074 69040491 -73230953 + MER41-int LTR ERV1 5266 5691 -255 2198 140 18 0 chr9 69040492 69040827 -73230617 + L1PA16 LINE L1 5826 6166 0 2135 146 0 0 chr9 69040834 69041143 -73230301 + AluSx SINE Alu 1 309 -3 5172 172 68 17 chr9 69041154 69041979 -73229465 + L1MD2 LINE L1 5188 5970 -389 916 143 0 0 chr9 69041979 69042112 -73229332 + FLAM_C SINE Alu 1 133 0 5172 172 68 17 chr9 69042112 69042210 -73229234 + L1MD2 LINE L1 5970 6062 -297 351 44 0 0 chr9 69042210 69042255 -73229189 + (CA)n Simple_repeat Simple_repeat 2 46 0 5172 172 68 17 chr9 69042255 69042442 -73229002 + L1MD2 LINE L1 6062 6356 -3 899 134 154 40 chr9 69043297 69043498 -73227946 - L1MA5A LINE L1 -3 6294 6071 1538 191 167 0 chr9 69043566 69043895 -73227549 + Tigger1 DNA MER2_type 30 413 -2005 772 165 8 16 chr9 69043895 69044022 -73227422 + FLAM_C SINE Alu 12 137 -6 21899 32 4 6 chr9 69044122 69047468 -73223976 + L1PA7 LINE L1 2820 6154 0 230 167 19 19 chr9 69047487 69047541 -73223903 + L1MC3 LINE L1 7050 7103 -682 * 328 209 23 12 chr9 69047537 69047623 -73223821 + L1 LINE L1 3537 3623 -2523 1998 140 30 0 chr9 69047876 69048176 -73223268 + AluSx SINE Alu 3 311 -1 2104 104 44 3 chr9 69048184 69048482 -73222962 + AluSg SINE Alu 1 310 0 422 240 41 16 chr9 69048501 69048622 -73222822 + L1MC5 LINE L1 7786 7909 -52 812 205 0 0 chr9 69049182 69049333 -73222111 - AluJb SINE Alu -14 298 148 209 320 35 58 chr9 69049666 69049838 -73221606 + L2 LINE L2 2890 3057 -215 1963 101 61 10 chr9 69050120 69050416 -73221028 + AluSx SINE Alu 1 311 -1 407 241 44 63 chr9 69051031 69051189 -73220255 + MIR3 SINE MIR 30 184 -24 220 189 0 0 chr9 69051392 69051429 -73220015 + (CA)n Simple_repeat Simple_repeat 1 37 0 259 291 27 18 chr9 69052158 69052268 -73219176 - L2 LINE L2 -252 3061 2951 181 219 27 55 chr9 69052506 69052579 -73218865 - MIR SINE MIR -103 159 89 1962 152 0 3 chr9 69052692 69052989 -73218455 + AluJo SINE Alu 1 296 -16 402 171 23 23 chr9 69054434 69054522 -73216922 + L1MB5 LINE L1 6087 6174 0 10951 71 81 6 chr9 69055259 69056747 -73214697 + L1P LINE L1 13 1611 -4535 391 204 57 0 chr9 69056910 69056998 -73214446 + L1MB5 LINE L1 6080 6172 -2 24 32 0 0 chr9 69057199 69057230 -73214214 + AT_rich Low_complexity Low_complexity 1 31 0 385 309 23 29 chr9 69058542 69058717 -73212727 - MER5B DNA MER1_type -4 174 1 230 167 21 21 chr9 69058879 69058927 -73212517 - MIR SINE MIR -75 133 86 854 131 30 42 chr9 69060571 69060739 -73210705 + L1MB2 LINE L1 6002 6167 -4 360 169 0 0 chr9 69060768 69060827 -73210617 + MER46C DNA MER2_type 1 59 -279 647 224 7 14 chr9 69060829 69060976 -73210468 + MER46C DNA MER2_type 193 338 0 1276 274 57 62 chr9 69062881 69063703 -73207741 + L1M4 LINE L1 3371 4188 -1958 1949 173 13 0 chr9 69063789 69064095 -73207349 - AluJo SINE Alu -2 310 1 242 261 42 99 chr9 69064204 69064346 -73207098 + MIR3 SINE MIR 15 148 -60 314 125 0 0 chr9 69064800 69064848 -73206596 + MER31B LTR ERV1 9 56 -410 1812 159 24 3 chr9 69064908 69065203 -73206241 - AluJb SINE Alu -11 301 1 1542 183 63 21 chr9 69065221 69065555 -73205889 + MER31B LTR ERV1 85 432 -34 2254 97 0 36 chr9 69065556 69065864 -73205580 - AluSg SINE Alu -13 297 1 2461 160 34 36 chr9 69065864 69066339 -73205105 + L1MB8 LINE L1 5705 6178 0 1768 149 14 24 chr9 69066357 69066652 -73204792 + AluJb SINE Alu 12 303 -9 231 231 19 0 chr9 69069944 69069996 -73201448 + MIR3 SINE MIR 115 167 -41 1705 220 28 9 chr9 69071545 69071973 -73199471 - L1M4 LINE L1 -905 5241 4806 892 307 95 22 chr9 69071985 69072448 -73198996 - HAL1 LINE L1 -584 1923 1427 640 213 256 0 chr9 69072463 69072674 -73198770 - LTR37B LTR ERV1 -4 464 200 731 265 66 56 chr9 69072768 69072938 -73198506 - L1M4c LINE L1 -1087 1656 1489 279 0 0 0 chr9 69072938 69072969 -73198475 + (ATG)n Simple_repeat Simple_repeat 2 32 0 731 265 66 56 chr9 69072969 69072980 -73198464 - L1M4c LINE L1 -1254 1489 1480 1635 193 3 0 chr9 69072980 69073265 -73198179 - AluSx SINE Alu -26 286 1 731 265 66 56 chr9 69073265 69073612 -73197832 - L1M4c LINE L1 -1263 1480 1159 494 233 0 48 chr9 69073824 69073927 -73197517 + FRAM SINE Alu 1 97 -79 219 284 0 0 chr9 69074450 69074538 -73196906 + (TA)n Simple_repeat Simple_repeat 1 88 0 328 254 127 8 chr9 69075512 69075630 -73195814 - MIR SINE MIR 0 262 131 222 200 0 20 chr9 69076331 69076381 -73195063 + CT-rich Low_complexity Low_complexity 2 50 0 734 218 80 73 chr9 69077563 69077852 -73193592 - L1ME2 LINE L1 -1 6163 5873 5826 145 16 39 chr9 69077867 69079122 -73192322 - L1MA4A LINE L1 -11 6292 5057 623 218 61 57 chr9 69079320 69079549 -73191895 + L1MC5 LINE L1 7701 7930 -31 249 215 46 31 chr9 69079604 69079669 -73191775 + L1MC5 LINE L1 7714 7779 -182 204 40 0 0 chr9 69080288 69080313 -73191131 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 581 234 0 8 chr9 69081069 69081197 -73190247 + FLAM_C SINE Alu 1 127 -6 227 158 126 53 chr9 69081837 69081932 -73189512 - L1MC4 LINE L1 -357 7685 7584 646 246 36 31 chr9 69081994 69082218 -73189226 - L1MC5 LINE L1 -30 7931 7707 975 199 81 78 chr9 69082297 69082377 -73189067 - L1MC5 LINE L1 -417 7544 7466 2303 106 0 3 chr9 69082377 69082680 -73188764 - AluSx SINE Alu -10 302 1 975 199 81 78 chr9 69082680 69082945 -73188499 - L1MC5 LINE L1 -495 7466 7198 238 230 149 0 chr9 69083234 69083308 -73188136 - MER103 DNA DNA -72 94 10 337 246 0 0 chr9 69083398 69083459 -73187985 - L2 LINE L2 -1 3271 3211 673 256 165 46 chr9 69083691 69084019 -73187425 - MLT1G1 LTR MaLR -3 592 226 412 115 0 64 chr9 69084054 69084132 -73187312 - L1MB4 LINE L1 0 6180 6108 198 0 0 0 chr9 69085112 69085134 -73186310 + (TG)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr9 69085714 69085734 -73185710 + (A)n Simple_repeat Simple_repeat 1 20 0 1802 135 0 0 chr9 69088382 69088641 -73182803 - AluSx SINE Alu -9 303 45 2127 100 0 11 chr9 69089020 69089300 -73182144 + AluSg SINE Alu 21 297 -13 7620 30 16 0 chr9 69089368 69090370 -73181074 - L1PA4 LINE L1 0 6155 5149 2070 129 7 3 chr9 69090479 69090774 -73180670 - AluJb SINE Alu -16 296 1 225 254 67 81 chr9 69090774 69090983 -73180461 - L1M4 LINE L1 -3003 3143 2938 376 250 121 0 chr9 69090984 69091100 -73180344 - MER69A DNA AcHobo -47 130 1 197 354 76 28 chr9 69091285 69091429 -73180015 - MIR SINE MIR -110 152 2 1835 174 100 91 chr9 69091580 69092121 -73179323 - MLT1F1 LTR MaLR -2 565 20 1378 209 87 69 chr9 69092142 69092192 -73179252 - MSTB2 LTR MaLR 0 457 409 1948 133 43 0 chr9 69092192 69092471 -73178973 - AluSx SINE Alu -21 291 1 1378 209 87 69 chr9 69092471 69092855 -73178589 - MSTB2 LTR MaLR -48 409 15 1070 204 50 82 chr9 69092857 69093101 -73178343 + MER39 LTR ERV1 14 264 -321 2320 75 44 0 chr9 69093101 69093395 -73178049 - AluY SINE Alu -4 307 1 1070 204 50 82 chr9 69093395 69093641 -73177803 + MER39 LTR ERV1 264 585 0 1389 244 98 34 chr9 69093846 69094586 -73176858 - L2 LINE L2 0 3313 2535 273 303 97 39 chr9 69094680 69094835 -73176609 - L2 LINE L2 -2 3270 3107 2639 53 0 0 chr9 69095025 69095326 -73176118 + AluY SINE Alu 3 303 -8 2136 71 59 24 chr9 69095496 69095886 -73175558 - LTR7 LTR ERV1 -2 448 1 2348 93 48 13 chr9 69095886 69096263 -73175181 - HERVH LTR ERV1 0 7713 7324 1292 139 23 0 chr9 69096263 69096478 -73174966 - HERVH LTR ERV1 -1894 5819 5600 4273 139 0 1 chr9 69096479 69097142 -73174302 - HERVH LTR ERV1 -2564 5149 4488 6163 75 2 2 chr9 69097144 69097998 -73173446 - HERVH LTR ERV1 -3720 3993 3140 1109 138 20 15 chr9 69097984 69098187 -73173257 - HERVH LTR ERV1 -4721 2992 2789 * 13250 59 67 2 chr9 69098287 69100096 -73171348 - L1P LINE L1 -4207 1939 13 564 157 119 15 chr9 69100528 69100662 -73170782 + MER63 DNA MER1_type 5 152 -909 1735 154 4 7 chr9 69100682 69100955 -73170489 - AluJo SINE Alu -40 272 1 961 252 153 3 chr9 69101242 69101615 -73169829 - MLT2F LTR ERVL -232 431 3 181 338 15 52 chr9 69101675 69101811 -73169633 + L2 LINE L2 2948 3078 -194 378 257 37 28 chr9 69101894 69102003 -73169441 - MIR SINE MIR -118 144 35 365 274 116 14 chr9 69102461 69102607 -73168837 + MIR3 SINE MIR 18 178 -30 237 83 0 0 chr9 69102791 69102827 -73168617 + (TG)n Simple_repeat Simple_repeat 2 37 0 394 220 182 51 chr9 69102854 69103068 -73168376 + L2 LINE L2 2840 3081 -232 258 83 0 21 chr9 69103105 69103153 -73168291 - L1MB3 LINE L1 -7 6176 6130 2361 186 52 14 chr9 69103170 69103655 -73167789 - L1MB2 LINE L1 -10 6161 5659 1709 196 0 10 chr9 69103655 69103961 -73167483 - AluJb SINE Alu -9 303 1 339 97 0 32 chr9 69103993 69104055 -73167389 - Alu SINE Alu -1 301 242 1045 173 44 44 chr9 69104132 69104198 -73167246 + LTR37B LTR ERV1 197 262 -206 2126 129 13 0 chr9 69104198 69104501 -73166943 - AluSx SINE Alu -5 307 1 1045 173 44 44 chr9 69104501 69104706 -73166738 + LTR37B LTR ERV1 261 468 0 402 295 148 0 chr9 69104917 69105066 -73166378 - MIR SINE MIR -8 254 84 2861 125 21 62 chr9 69105819 69106348 -73165096 + MER1A DNA MER1_type 23 529 0 422 248 15 88 chr9 69106833 69106970 -73164474 + MIR SINE MIR 92 218 -44 38 0 0 0 chr9 69108046 69108084 -73163360 + AT_rich Low_complexity Low_complexity 1 38 0 820 261 187 26 chr9 69113068 69113458 -73157986 - L2 LINE L2 -18 3295 2843 291 286 13 24 chr9 69113505 69113629 -73157815 - MER20B DNA MER1_type -26 193 67 268 309 135 0 chr9 69114696 69114822 -73156622 + MIR SINE MIR 113 255 -7 760 254 117 21 chr9 69115324 69115615 -73155829 + MER46C DNA MER2_type 18 336 -2 314 305 21 0 chr9 69115816 69115911 -73155533 + MIR3 SINE MIR 62 158 -50 856 182 26 53 chr9 69115916 69116180 -73155264 - MER20B DNA MER1_type -5 778 522 42156 41 6 2 chr9 69116284 69121958 -73149486 - L1P2 LINE L1 -460 5695 1 823 201 56 0 chr9 69124138 69124317 -73147127 + MER5A DNA MER1_type 1 189 0 330 259 25 0 chr9 69124701 69124782 -73146662 - MIR SINE MIR -107 155 73 292 324 43 51 chr9 69125426 69125608 -73145836 + MIR SINE MIR 8 199 -9 329 288 0 0 chr9 69125792 69125865 -73145579 - L2 LINE L2 0 3272 3200 351 313 265 0 chr9 69126871 69127018 -73144426 + MER5A DNA MER1_type 4 189 0 281 262 58 0 chr9 69127139 69127242 -73144202 + MER97c DNA MER1_type? 15 123 -967 1476 192 53 12 chr9 69127940 69128279 -73143165 - MLT1A1 LTR MaLR 0 365 13 1056 168 94 15 chr9 69128420 69128623 -73142821 - MER20B DNA MER1_type 0 219 1 359 280 42 77 chr9 69128690 69128858 -73142586 + MIR SINE MIR 80 241 -21 402 234 85 21 chr9 69130218 69130359 -73141085 + MER117 DNA MER1_type 1 150 -47 234 0 0 0 chr9 69131083 69131109 -73140335 + (T)n Simple_repeat Simple_repeat 1 26 0 763 251 164 13 chr9 69131540 69131648 -73139796 + LTR16A1 LTR ERVL 22 112 -345 1497 213 65 52 chr9 69131648 69132109 -73139335 + MLT1C LTR MaLR 1 467 0 763 251 164 13 chr9 69132109 69132379 -73139065 + LTR16A1 LTR ERVL 112 457 0 815 292 29 25 chr9 69133458 69133735 -73137709 + MER20B DNA MER1_type 1 278 -505 360 191 0 0 chr9 69133839 69133907 -73137537 + AluS SINE Alu 1 68 -235 352 258 111 22 chr9 69135919 69136079 -73135365 - MER20B DNA MER1_type -24 195 21 275 339 119 0 chr9 69139075 69139193 -73132251 + L2 LINE L2 3138 3269 -3 2065 155 13 0 chr9 69139682 69139986 -73131458 - AluJb SINE Alu -4 308 1 292 295 32 0 chr9 69141698 69141793 -73129651 - MER91A DNA MER1_type -96 100 3 844 221 55 0 chr9 69141823 69142040 -73129404 + MIR SINE MIR 34 262 0 273 324 54 49 chr9 69142157 69142342 -73129102 + MIR3 SINE MIR 23 208 0 658 47 24 0 chr9 69144434 69144519 -73126925 + L1PA4 LINE L1 6066 6152 -3 616 298 79 9 chr9 69145100 69145328 -73126116 + MIR SINE MIR 12 255 -7 315 257 7 83 chr9 69146053 69146096 -73125348 + MER94 DNA DNA 2 47 -87 895 227 56 0 chr9 69146096 69146294 -73125150 - MER3 DNA MER1_type 0 209 1 315 257 7 83 chr9 69146294 69146394 -73125050 + MER94 DNA DNA 47 134 0 479 212 331 7 chr9 69146552 69146703 -73124741 + MER3 DNA MER1_type 2 201 -8 39794 37 27 2 chr9 69147932 69152738 -73118706 + L1P LINE L1 1 4929 -1217 499 130 162 19 chr9 69152841 69152995 -73118449 + Charlie5 DNA MER1_type 2410 2585 -27 4732 152 50 13 chr9 69153204 69153568 -73117876 - L1PB4 LINE L1 -5 6151 5802 261 0 0 0 chr9 69153568 69153597 -73117847 + (TG)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr9 69153596 69153620 -73117824 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 4732 152 50 13 chr9 69153597 69154184 -73117260 - L1PB4 LINE L1 -354 5802 5190 21 0 0 0 chr9 69154731 69154752 -73116692 + AT_rich Low_complexity Low_complexity 1 21 0 243 88 0 0 chr9 69155203 69155237 -73116207 + (TG)n Simple_repeat Simple_repeat 1 34 0 6936 175 27 19 chr9 69155816 69158205 -73113239 - L1PA16 LINE L1 -6 6160 3754 742 142 8 8 chr9 69158204 69158338 -73113106 + L1P LINE L1 1275 1408 -4738 * 231 311 0 0 chr9 69158498 69158543 -73112901 + T-rich Low_complexity Low_complexity 1 45 0 1365 184 96 0 chr9 69159100 69159250 -73112194 - AluJo SINE Alu -26 286 152 450 0 0 0 chr9 69159250 69159300 -73112144 + (TG)n Simple_repeat Simple_repeat 2 51 0 1365 184 96 0 chr9 69159300 69159410 -73112034 - AluJo SINE Alu -160 152 1 202 221 0 44 chr9 69160446 69160514 -73110930 + MIR SINE MIR 81 145 -63 284 272 87 0 chr9 69162221 69162313 -73109131 - L2 LINE L2 0 3313 3214 861 242 149 73 chr9 69162434 69162938 -73108506 - MLT1E LTR MaLR 0 542 1 196 106 152 30 chr9 69166028 69166094 -73105350 + MIR SINE MIR 177 250 -12 21 0 0 0 chr9 69166426 69166447 -73104997 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 69166727 69166748 -73104696 + AT_rich Low_complexity Low_complexity 1 21 0 254 246 61 61 chr9 69167211 69167325 -73104119 - L2 LINE L2 -1 3312 3199 217 273 115 36 chr9 69168588 69168753 -73102691 - MIR SINE MIR -18 244 67 2339 90 3 10 chr9 69168864 69169165 -73102279 + AluSq SINE Alu 3 301 -12 7495 43 0 0 chr9 69169311 69170436 -73101008 - L1PA5 LINE L1 0 6154 5031 7796 32 5 3 chr9 69170445 69172167 -73099277 - L1PA3 LINE L1 -3 6152 4269 347 213 62 0 chr9 69173459 69173539 -73097905 + MER103 DNA DNA 3 87 -79 1034 210 0 0 chr9 69173703 69173889 -73097555 - MER5A DNA MER1_type 0 189 4 540 144 51 42 chr9 69175348 69175411 -73096033 - MER5A DNA MER1_type -68 121 55 1590 182 193 59 chr9 69175411 69175972 -73095472 - MER92B LTR ERV1 0 636 1 540 144 51 42 chr9 69175972 69176026 -73095418 - MER5A DNA MER1_type -134 55 3 182 33 67 0 chr9 69176116 69176146 -73095298 + T-rich Low_complexity Low_complexity 5 36 0 1915 137 11 4 chr9 69176146 69176424 -73095020 - AluSx SINE Alu -32 280 1 2056 144 7 0 chr9 69176435 69176740 -73094704 - AluSq SINE Alu -4 309 3 213 296 128 16 chr9 69178206 69178281 -73093163 + MER5A DNA MER1_type 51 116 -73 180 111 0 0 chr9 69178281 69178308 -73093136 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 213 296 128 16 chr9 69178308 69178357 -73093087 + MER5A DNA MER1_type 116 189 0 20928 27 2 1 chr9 69178939 69182197 -73089247 - L1PA2 LINE L1 0 6155 2921 237 211 57 46 chr9 69182343 69182477 -73088967 + L1MC4 LINE L1 1939 6965 -1357 189 147 0 0 chr9 69182495 69182529 -73088915 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 416 309 114 65 chr9 69182558 69183130 -73088314 + L2 LINE L2 2710 3310 -3 509 286 59 23 chr9 69183308 69183528 -73087916 + MIR SINE MIR 11 238 -24 199 252 29 19 chr9 69183549 69183652 -73087792 - L2 LINE L2 -554 2760 2657 515 226 121 11 chr9 69184039 69184229 -73087215 - L1ME LINE L1 -373 5748 5538 268 246 0 33 chr9 69185182 69185243 -73086201 + MER1B DNA MER1_type 1 59 -278 * 666 128 56 56 chr9 69185215 69185340 -73086104 + MER1B DNA MER1_type 149 273 -66 452 128 233 0 chr9 69186185 69186271 -73085173 + MER2 DNA MER2_type 2 107 -238 3679 132 23 16 chr9 69186372 69187318 -73084126 - HERVH LTR ERV1 -6576 1137 1 2212 88 42 15 chr9 69187320 69187680 -73083764 - LTR7 LTR ERV1 -2 448 31 1168 121 6 0 chr9 69187793 69187959 -73083485 + AluSg/x SINE Alu 128 294 -18 1271 106 0 0 chr9 69188004 69188164 -73083280 + AluSq SINE Alu 1 160 -153 535 268 122 35 chr9 69188593 69189156 -73082288 + L2 LINE L2 2658 3264 -49 665 187 22 30 chr9 69191627 69191761 -73079683 + MIR SINE MIR 2 134 -128 1405 147 29 25 chr9 69191824 69192069 -73079375 + L1MC1 LINE L1 6081 6326 -7 570 264 218 38 chr9 69192655 69193159 -73078285 + L1MC4a LINE L1 5548 6142 -1666 214 343 88 29 chr9 69193577 69193714 -73077730 - MIR3 SINE MIR -2 206 62 541 305 134 37 chr9 69194108 69194429 -73077015 + MLT1J2 LTR MaLR 66 417 -33 12827 29 6 1 chr9 69194590 69196784 -73074660 + L1PA2 LINE L1 3952 6152 -3 192 135 0 0 chr9 69196792 69196829 -73074615 + (A)n Simple_repeat Simple_repeat 1 37 0 375 291 153 42 chr9 69198198 69198459 -73072985 + L2 LINE L2 2980 3269 -3 938 136 0 0 chr9 69198637 69198769 -73072675 - FLAM_C SINE Alu -11 132 1 2360 97 0 0 chr9 69199607 69199905 -73071539 - AluSq SINE Alu -15 298 1 204 125 0 0 chr9 69200502 69200534 -73070910 + (T)n Simple_repeat Simple_repeat 1 32 0 1321 184 113 56 chr9 69201118 69201455 -73069989 + MSTC LTR MaLR 1 356 -72 237 288 38 0 chr9 69202271 69202351 -73069093 - L2 LINE L2 -2 3270 3188 1542 183 109 48 chr9 69202573 69202609 -73068835 - MER31B LTR ERV1 -9 476 444 2300 100 0 29 chr9 69202609 69202919 -73068525 + AluSx SINE Alu 1 301 -11 1542 183 109 48 chr9 69202919 69203272 -73068172 - MER31B LTR ERV1 -41 444 114 1847 155 24 3 chr9 69203272 69203568 -73067876 + AluJb SINE Alu 1 302 -10 198 0 0 0 chr9 69203578 69203600 -73067844 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1542 183 109 48 chr9 69203600 69203681 -73067763 - MER31B LTR ERV1 -379 106 9 291 310 7 63 chr9 69204138 69204280 -73067164 - MIR3 SINE MIR -60 148 15 1815 182 14 0 chr9 69204389 69204680 -73066764 + AluJo SINE Alu 1 295 -17 388 238 135 0 chr9 69204983 69205178 -73066266 - HAL1b LINE L1 -133 2374 758 386 233 208 0 chr9 69205437 69205557 -73065887 - MER5A DNA MER1_type -29 160 16 1283 266 102 47 chr9 69205567 69206251 -73065193 - HAL1 LINE L1 -975 1532 811 329 259 70 60 chr9 69206522 69206707 -73064737 - L1MC5 LINE L1 -36 7925 7739 542 144 0 0 chr9 69206720 69206810 -73064634 - L1MB4 LINE L1 0 6180 6091 1962 148 0 40 chr9 69206812 69207136 -73064308 + AluSx SINE Alu 1 311 -1 279 289 22 0 chr9 69207140 69207230 -73064214 + L1PA16 LINE L1 6074 6165 -1 273 57 0 0 chr9 69207270 69207305 -73064139 + (TA)n Simple_repeat Simple_repeat 2 36 0 322 262 166 14 chr9 69207852 69207997 -73063447 - L1MC/D LINE L1 -2303 5505 5339 216 167 42 0 chr9 69208822 69208870 -73062574 + L2 LINE L2 3264 3313 0 251 232 54 107 chr9 69208945 69209057 -73062387 + MIR SINE MIR 24 129 -133 * 2010 250 241 25 chr9 69209040 69210062 -73061382 + L2 LINE L2 1802 3143 -170 2129 109 0 3 chr9 69210062 69210384 -73061060 + AluSq SINE Alu 1 321 0 2010 250 241 25 chr9 69210384 69210582 -73060862 + L2 LINE L2 3143 3297 -16 4803 142 21 53 chr9 69210582 69210818 -73060626 - L1MB1 LINE L1 0 6168 5926 1655 183 3 19 chr9 69210818 69211130 -73060314 - AluJo SINE Alu -5 307 1 4803 142 21 53 chr9 69211130 69211812 -73059632 - L1MB1 LINE L1 -242 5926 5280 28 79 0 0 chr9 69212032 69212095 -73059349 + AT_rich Low_complexity Low_complexity 1 63 0 38 61 0 0 chr9 69212212 69212278 -73059166 + AT_rich Low_complexity Low_complexity 1 66 0 435 140 10 22 chr9 69212310 69212942 -73058502 - L1MC3 LINE L1 0 7785 5568 312 191 79 0 chr9 69212959 69213022 -73058422 - MER94 DNA DNA -62 72 5 627 288 56 34 chr9 69213799 69214032 -73057412 - MIR SINE MIR -21 241 4 289 272 7 125 chr9 69217018 69217154 -73054290 + MIR SINE MIR 87 206 -56 876 286 24 63 chr9 69217396 69217822 -73053622 - MLT1J LTR MaLR -76 435 27 2297 236 81 27 chr9 69218106 69218700 -73052744 + MLT1E2 LTR MaLR 1 626 0 328 206 55 0 chr9 69219268 69219341 -73052103 - Charlie8 DNA MER1_type 0 2417 2341 452 314 10 31 chr9 69220128 69220322 -73051122 + MIR SINE MIR 23 212 -50 623 244 90 16 chr9 69220775 69221060 -73050384 - L2 LINE L2 0 3313 2919 307 212 86 80 chr9 69221146 69221297 -73050147 - L1MDa LINE L1 -4363 2177 2026 2353 86 0 3 chr9 69221497 69221798 -73049646 + AluSg SINE Alu 1 300 -10 1756 159 38 7 chr9 69223133 69223422 -73048022 - AluJb SINE Alu -14 298 1 1782 232 9 25 chr9 69223430 69223870 -73047574 - L1ME3 LINE L1 0 6162 5730 422 291 64 41 chr9 69224434 69224606 -73046838 - MIR SINE MIR -59 203 28 374 304 42 11 chr9 69225949 69226140 -73045304 - L1ME3 LINE L1 -2357 5451 5255 319 259 133 46 chr9 69228041 69228304 -73043140 - L1ME3 LINE L1 -3389 2757 2472 303 203 0 0 chr9 69228748 69228812 -73042632 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 1782 129 53 0 chr9 69228820 69229084 -73042360 - L1PA13 LINE L1 -10 6153 5876 953 207 154 31 chr9 69229475 69229794 -73041650 - L1ME3 LINE L1 -11 6151 5794 357 279 25 94 chr9 69229801 69230068 -73041376 - L1MDa LINE L1 -898 2003 1739 841 276 26 18 chr9 69230633 69230861 -73040583 + MIR SINE MIR 19 248 -14 1402 131 42 55 chr9 69230870 69231107 -73040337 - MER46A DNA MER2_type -2 234 1 2001 125 20 7 chr9 69231631 69231926 -73039518 - AluSx SINE Alu -13 299 1 520 167 33 0 chr9 69232137 69232227 -73039217 + L1MA6 LINE L1 6199 6291 -9 2316 112 0 0 chr9 69232362 69232674 -73038770 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 69233642 69233665 -73037779 + AT_rich Low_complexity Low_complexity 1 23 0 1794 148 30 10 chr9 69234618 69234921 -73036523 + L1M3 LINE L1 5439 5747 -433 684 302 133 33 chr9 69235410 69236175 -73035269 + L2 LINE L2 2182 3077 -195 328 363 51 13 chr9 69236588 69236745 -73034699 + L2 LINE L2 3108 3270 -2 572 280 217 13 chr9 69236763 69237271 -73034173 + L2 LINE L2 2690 3312 -1 28 0 0 0 chr9 69237653 69237681 -73033763 + AT_rich Low_complexity Low_complexity 1 28 0 1852 46 5 0 chr9 69237681 69237898 -73033546 - L1PA5 LINE L1 -7 6147 5930 362 328 100 11 chr9 69238972 69239152 -73032292 + MIR SINE MIR 67 262 0 789 158 169 23 chr9 69239629 69239693 -73031751 + MER20 DNA MER1_type 16 69 -150 399 21 0 0 chr9 69239693 69239741 -73031703 + (TG)n Simple_repeat Simple_repeat 2 49 0 789 158 169 23 chr9 69239741 69239853 -73031591 + MER20 DNA MER1_type 69 218 -1 201 200 0 40 chr9 69240438 69240488 -73030956 - L2 LINE L2 -4 3268 3221 616 247 114 26 chr9 69241629 69241900 -73029544 + L1ME4a LINE L1 5808 6102 -19 270 219 59 27 chr9 69241953 69242085 -73029359 - L1ME LINE L1 -290 5831 5693 2545 83 6 0 chr9 69242334 69242658 -73028786 - L1PA10 LINE L1 -5 6163 5838 280 341 96 60 chr9 69242662 69243081 -73028363 + L2 LINE L2 2836 3269 -3 249 229 72 24 chr9 69243081 69243164 -73028280 - L1ME LINE L1 -263 5858 5772 1220 151 60 5 chr9 69243218 69243436 -73028008 + AluSc SINE Alu 79 308 -1 1709 157 71 0 chr9 69243450 69243730 -73027714 + AluJo SINE Alu 1 300 -12 255 196 0 0 chr9 69244240 69244291 -73027153 + MER116 DNA Mariner 13 63 -17 208 239 0 0 chr9 69244291 69244337 -73027107 + (TATG)n Simple_repeat Simple_repeat 2 47 0 254 232 29 29 chr9 69244489 69244558 -73026886 + MER5A DNA MER1_type 120 188 -1 1882 146 0 11 chr9 69245181 69245468 -73025976 - AluJb SINE Alu -28 284 1 8102 24 2 0 chr9 69245503 69247114 -73024330 + L1PA4 LINE L1 4537 6149 -6 48 43 0 0 chr9 69247132 69247201 -73024243 + AT_rich Low_complexity Low_complexity 1 69 0 1696 92 38 4 chr9 69247253 69247493 -73023951 - L1MA5A LINE L1 -10 6287 6040 237 219 73 10 chr9 69247874 69247970 -73023474 + MER113 DNA MER1_type? 116 217 -304 337 246 0 0 chr9 69248053 69248122 -73023322 - MIR SINE MIR -62 146 78 230 229 133 57 chr9 69249080 69249185 -73022259 + L2 LINE L2 3160 3272 0 594 233 14 20 chr9 69249773 69249919 -73021525 - MIR SINE MIR -103 159 15 393 261 42 0 chr9 69250425 69250544 -73020900 + MER117 DNA MER1_type 30 153 -44 229 237 17 0 chr9 69251835 69251894 -73019550 + L2 LINE L2 3254 3313 0 326 247 123 62 chr9 69251961 69252123 -73019321 + MIR3 SINE MIR 26 197 -11 211 135 0 27 chr9 69253128 69253165 -73018279 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2419 145 27 69 chr9 69253183 69253660 -73017784 + LTR32 LTR ERVL 15 471 0 592 272 30 0 chr9 69254063 69254232 -73017212 + MIR SINE MIR 77 250 -12 189 263 0 0 chr9 69254502 69254540 -73016904 + L2 LINE L2 3138 3175 -97 314 309 24 8 chr9 69254568 69254694 -73016750 - MIR SINE MIR -41 221 94 678 260 104 0 chr9 69254728 69254901 -73016543 + MIR SINE MIR 59 249 -13 771 192 68 6 chr9 69255272 69255449 -73015995 - L2 LINE L2 0 3313 3126 774 277 30 0 chr9 69256784 69256986 -73014458 + L2 LINE L2 314 521 -2793 254 332 104 40 chr9 69257334 69257536 -73013908 + MLT1K LTR MaLR 16 230 -358 265 248 163 35 chr9 69257587 69257728 -73013716 + MLT1K LTR MaLR 351 509 -79 574 279 43 8 chr9 69257728 69257914 -73013530 + MLT1J2 LTR MaLR 1 195 -249 2179 138 0 3 chr9 69257990 69258301 -73013143 + AluSx SINE Alu 1 310 -2 571 271 17 44 chr9 69258343 69258524 -73012920 - L2 LINE L2 -258 3055 2880 862 282 29 46 chr9 69258574 69258921 -73012523 - L2 LINE L2 -708 2606 2266 452 234 117 0 chr9 69258956 69259084 -73012360 - MIR SINE MIR -6 256 114 2014 145 0 3 chr9 69259204 69259501 -73011943 - AluJb SINE Alu -14 298 3 189 289 53 40 chr9 69259503 69259579 -73011865 + L2 LINE L2 3186 3262 -10 389 306 76 70 chr9 69260227 69260557 -73010887 + L2 LINE L2 2938 3269 -3 346 315 34 14 chr9 69260608 69260754 -73010690 + MIR3 SINE MIR 43 191 -17 516 289 109 28 chr9 69261880 69262202 -73009242 + MER34B LTR ERV1 216 563 -2 1511 199 7 10 chr9 69262570 69262866 -73008578 + AluJo SINE Alu 9 303 -9 912 149 32 53 chr9 69262867 69263055 -73008389 + THE1C LTR MaLR 140 323 -52 317 199 309 37 chr9 69264456 69264592 -73006852 - MER5A DNA MER1_type -8 181 9 480 288 105 13 chr9 69265066 69265295 -73006149 + MIR SINE MIR 12 261 -1 1601 193 7 4 chr9 69266253 69266533 -73004911 - AluJo SINE Alu -30 282 2 311 307 20 0 chr9 69266642 69266743 -73004701 - MLT1J LTR MaLR 0 511 409 336 254 254 49 chr9 69266802 69267026 -73004418 - MLT1J LTR MaLR -222 289 20 4510 36 9 0 chr9 69267386 69268063 -73003381 - L1PA2 LINE L1 -624 5531 4851 5867 22 3 3 chr9 69268063 69268696 -73002748 + L1PA2 LINE L1 5509 6155 0 1378 169 90 4 chr9 69269205 69269483 -73001961 + L1MB3 LINE L1 5882 6183 0 789 234 99 0 chr9 69269881 69270052 -73001392 + MER5A DNA MER1_type 1 188 -1 315 210 202 50 chr9 69270508 69270627 -73000817 + MIR SINE MIR 17 153 -55 233 304 133 50 chr9 69270696 69270768 -73000676 + MIR SINE MIR 57 122 -140 2005 117 21 0 chr9 69270768 69271050 -73000394 + AluSx SINE Alu 1 288 -24 323 31 16 47 chr9 69271054 69271118 -73000326 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 233 304 133 50 chr9 69271118 69271221 -73000223 + MIR SINE MIR 124 252 -10 956 186 16 61 chr9 69272394 69272537 -72998907 - L1MB7 LINE L1 -21 6163 6034 2267 103 0 6 chr9 69272537 69272849 -72998595 + AluY SINE Alu 1 310 -1 956 186 16 61 chr9 69272849 69272952 -72998492 - L1MB7 LINE L1 -150 6034 5928 324 277 30 30 chr9 69272952 69273053 -72998391 - L2 LINE L2 -24 3289 3189 602 241 7 29 chr9 69273969 69274106 -72997338 + MER94 DNA DNA 1 134 0 473 270 16 8 chr9 69276089 69276215 -72995229 + L2 LINE L2 3187 3313 0 434 261 69 84 chr9 69276597 69276773 -72994671 - MIR SINE MIR -21 241 69 2673 48 0 3 chr9 69276773 69277085 -72994359 - AluY SINE Alu 0 311 1 434 261 69 84 chr9 69277085 69277151 -72994293 - MIR SINE MIR -193 69 4 2836 107 3 0 chr9 69277417 69277780 -72993664 - THE1B LTR MaLR 0 364 1 788 256 93 5 chr9 69278066 69278281 -72993163 + MIR SINE MIR 29 262 0 2667 120 57 12 chr9 69279487 69279911 -72991533 + MER65A LTR ERV1 1 443 -2 772 225 0 29 chr9 69279913 69280086 -72991358 + MER65A-int LTR ERV1 5 172 -4699 836 214 0 0 chr9 69280086 69280249 -72991195 - FRAM SINE Alu 0 170 8 5346 197 81 41 chr9 69280255 69280329 -72991115 + MER65A-int LTR ERV1 161 231 -4640 1587 195 17 23 chr9 69280329 69280631 -72990813 + AluJo SINE Alu 1 300 -12 5346 197 81 41 chr9 69280631 69282728 -72988716 + MER65A-int LTR ERV1 231 2494 -2377 1857 162 79 103 chr9 69282826 69283582 -72987862 + MER65A-int LTR ERV1 1541 3481 -3117 624 175 96 83 chr9 69283810 69284039 -72987405 + MER65A-int LTR ERV1 3499 3730 -2868 3028 180 93 84 chr9 69284118 69285210 -72986234 + MER65A-int LTR ERV1 2469 3550 -2781 1938 153 0 3 chr9 69285210 69285504 -72985940 + AluSx SINE Alu 1 293 -19 3028 180 93 84 chr9 69285504 69285757 -72985687 + MER65A-int LTR ERV1 3550 5094 -1237 5834 212 46 16 chr9 69285920 69287149 -72984295 + MER65A-int LTR ERV1 3605 4871 0 3005 106 8 64 chr9 69287149 69287620 -72983824 + MER65A LTR ERV1 1 445 0 452 144 93 31 chr9 69288034 69288131 -72983313 - L1MB3 LINE L1 -1 6182 6080 267 238 32 0 chr9 69288291 69288354 -72983090 + MER117 DNA MER1_type 9 73 -124 188 327 53 44 chr9 69288631 69288744 -72982700 - L2 LINE L2 -5 3267 3154 477 329 75 33 chr9 69289102 69289342 -72982102 + MIR SINE MIR 10 259 -3 429 232 0 0 chr9 69289684 69289766 -72981678 + MIR SINE MIR 58 139 -123 2369 81 14 0 chr9 69290691 69290987 -72980457 + AluSx SINE Alu 1 300 -12 465 234 60 21 chr9 69291243 69291442 -72980002 + MIR SINE MIR 9 262 0 890 243 34 52 chr9 69291774 69292041 -72979403 + MIR SINE MIR 1 262 0 376 283 25 17 chr9 69292308 69292428 -72979016 - MER5A DNA MER1_type -1 188 68 242 322 59 42 chr9 69292446 69292564 -72978880 - MIR3 SINE MIR -42 166 47 210 171 0 0 chr9 69292871 69292906 -72978538 + A-rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chr9 69293637 69293662 -72977782 + (T)n Simple_repeat Simple_repeat 1 25 0 494 329 13 13 chr9 69293892 69294047 -72977397 - MER5A DNA MER1_type 0 189 35 22 80 0 0 chr9 69294674 69294724 -72976720 + AT_rich Low_complexity Low_complexity 1 50 0 537 306 154 29 chr9 69295413 69295828 -72975616 + L2 LINE L2 2847 3313 0 234 0 0 0 chr9 69296614 69296640 -72974804 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1880 217 166 10 chr9 69298198 69298709 -72972735 + MLT1E LTR MaLR 3 593 0 428 256 33 61 chr9 69299968 69300148 -72971296 - L2 LINE L2 -2 3311 3137 675 265 31 76 chr9 69300161 69300542 -72970902 - L2 LINE L2 -8 3305 2942 563 311 145 9 chr9 69300638 69301066 -72970378 + L2 LINE L2 1604 2089 -1225 201 246 0 53 chr9 69301091 69301148 -72970296 + L3 LINE CR1 892 945 -632 456 314 86 9 chr9 69301201 69301413 -72970031 + MIR SINE MIR 16 241 -21 7271 45 9 0 chr9 69301460 69302352 -72969092 + L1PA6 LINE L1 5254 6153 -1 665 313 23 17 chr9 69302668 69302907 -72968537 + MIR SINE MIR 14 248 -14 1250 235 89 86 chr9 69303075 69303407 -72968037 + LTR33 LTR ERVL 6 342 -179 238 24 0 49 chr9 69303407 69303448 -72967996 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1250 235 89 86 chr9 69303448 69303629 -72967815 + LTR33 LTR ERVL 342 521 0 3225 134 12 0 chr9 69304258 69304743 -72966701 + L1MA3 LINE L1 16 506 -7059 * 7004 112 37 2 chr9 69304739 69306120 -72965324 + L1MA3 LINE L1 2459 3888 -3677 3197 134 24 4 chr9 69306118 69306823 -72964621 + L1MA3 LINE L1 6477 7196 -528 * 1749 152 7 4 chr9 69306828 69307272 -72964172 + AluJb SINE Alu 23 467 0 3258 112 9 24 chr9 69307272 69307817 -72963627 + L1MA3 LINE L1 7188 7724 0 22 0 0 0 chr9 69307817 69307839 -72963605 + AT_rich Low_complexity Low_complexity 1 22 0 2271 117 0 0 chr9 69308523 69308823 -72962621 - AluSx SINE Alu -2 310 11 23 78 0 0 chr9 69309163 69309214 -72962230 + AT_rich Low_complexity Low_complexity 1 51 0 1398 226 94 66 chr9 69309539 69310164 -72961280 + L1MC5 LINE L1 6542 7204 -757 530 219 26 77 chr9 69310170 69310403 -72961041 + L1MC5 LINE L1 7275 7495 -466 27 29 0 0 chr9 69310748 69310782 -72960662 + AT_rich Low_complexity Low_complexity 1 34 0 192 241 289 12 chr9 69310883 69310966 -72960478 - MIR SINE MIR -83 179 74 4059 207 87 56 chr9 69310986 69312130 -72959314 + L1ME LINE L1 3897 5112 -1054 1511 99 14 14 chr9 69312130 69312351 -72959093 - AluSg/x SINE Alu -4 306 86 4059 207 87 56 chr9 69312351 69312840 -72958604 + L1ME LINE L1 5112 5584 -582 394 219 0 0 chr9 69312844 69312926 -72958518 + MLT2D LTR ERVL 6 87 -327 213 65 0 0 chr9 69312926 69312957 -72958487 + (GA)n Simple_repeat Simple_repeat 2 32 0 1360 184 48 27 chr9 69312984 69313292 -72958152 + MLT2D LTR ERVL 82 403 -61 245 89 22 0 chr9 69313292 69313337 -72958107 + (CA)n Simple_repeat Simple_repeat 2 47 0 1360 184 48 27 chr9 69313337 69313399 -72958045 + MLT2D LTR ERVL 403 462 -2 248 143 26 117 chr9 69313404 69313481 -72957963 + L1ME LINE L1 5579 5648 -518 1172 264 114 31 chr9 69314107 69314570 -72956874 + L2 LINE L2 2791 3305 -8 200 220 0 40 chr9 69315288 69315338 -72956106 + G-rich Low_complexity Low_complexity 4 51 0 347 263 91 108 chr9 69315698 69316260 -72955184 + LTR67 LTR ERVL 6 557 0 228 291 63 24 chr9 69316503 69316630 -72954814 + L1ME4a LINE L1 5977 6108 -13 966 308 83 46 chr9 69318960 69319723 -72951721 + L2 LINE L2 2108 2898 -416 1156 215 15 27 chr9 69320375 69320635 -72950809 + MIR SINE MIR 2 258 -4 2167 218 30 27 chr9 69321171 69321732 -72949712 + L1ME3 LINE L1 5600 6162 0 2323 98 0 0 chr9 69321772 69322069 -72949375 - AluSq SINE Alu -16 297 1 1760 180 38 11 chr9 69322167 69322534 -72948910 + MLT1B LTR MaLR 14 390 0 9624 167 111 30 chr9 69322829 69323002 -72948442 + L1M1 LINE L1 3466 3624 -3941 2072 124 0 37 chr9 69323002 69323325 -72948119 + AluY SINE Alu 1 311 0 9624 167 111 30 chr9 69323325 69324119 -72947325 + L1M1 LINE L1 3624 4352 -3213 1869 130 16 29 chr9 69324119 69324427 -72947017 + AluSp SINE Alu 1 304 -9 9624 167 111 30 chr9 69324427 69324614 -72946830 + L1M1 LINE L1 4352 4522 -3043 796 165 0 99 chr9 69324614 69324796 -72946648 + FRAM SINE Alu 3 166 0 9624 167 111 30 chr9 69324796 69326084 -72945360 + L1M1 LINE L1 4522 6132 -1433 1242 163 41 0 chr9 69326084 69326330 -72945114 + L1MA6 LINE L1 6035 6290 -10 1851 231 109 33 chr9 69326364 69327032 -72944412 + L1ME3 LINE L1 5444 6162 0 2699 20 0 0 chr9 69327133 69327438 -72944006 - AluYb8 SINE Alu -13 305 1 231 240 0 0 chr9 69327972 69328022 -72943422 + (TA)n Simple_repeat Simple_repeat 2 51 0 1255 60 0 22 chr9 69328510 69328694 -72942750 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1981 138 34 7 chr9 69328702 69328998 -72942446 - AluSx SINE Alu -8 304 1 405 254 101 102 chr9 69329010 69329422 -72942022 + LTR16A1 LTR ERVL 52 457 0 278 328 22 0 chr9 69329426 69329560 -72941884 + HAL1 LINE L1 771 907 -1600 1489 217 30 3 chr9 69331227 69331559 -72939885 + MER58B DNA MER1_type 1 341 0 201 296 159 23 chr9 69331700 69331832 -72939612 - MIR SINE MIR -23 185 36 1753 193 46 44 chr9 69331877 69332308 -72939136 + MSTB1 LTR MaLR 1 432 0 318 26 0 0 chr9 69332315 69332354 -72939090 + (CA)n Simple_repeat Simple_repeat 2 40 0 273 273 15 0 chr9 69332600 69332666 -72938778 + MIR SINE MIR 170 236 -26 490 264 92 6 chr9 69333387 69333561 -72937883 - MER112 DNA MER1_type -6 254 66 22 0 0 0 chr9 69334888 69334910 -72936534 + AT_rich Low_complexity Low_complexity 1 22 0 639 302 46 34 chr9 69335295 69335684 -72935760 + LTR16C LTR ERVL 46 466 -25 1783 106 0 0 chr9 69336086 69336313 -72935131 - AluSx SINE Alu -69 243 17 1125 269 89 32 chr9 69336504 69336910 -72934534 + L2 LINE L2 2885 3313 0 196 87 0 43 chr9 69339640 69339686 -72931758 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 1441 146 9 0 chr9 69339870 69340090 -72931354 + AluJo SINE Alu 84 305 -7 357 289 92 98 chr9 69342157 69342687 -72928757 + L1M2 LINE L1 451 977 -5872 292 218 26 13 chr9 69342903 69342981 -72928463 + AluS SINE Alu 2 80 -223 548 238 65 75 chr9 69343024 69343331 -72928113 + AluJo SINE Alu 9 312 0 321 118 0 0 chr9 69343352 69343403 -72928041 + (GGA)n Simple_repeat Simple_repeat 3 53 0 237 221 169 0 chr9 69344314 69344391 -72927053 - AluS SINE Alu -212 91 2 540 175 119 44 chr9 69345861 69346021 -72925423 - FRAM SINE Alu 0 176 5 316 194 97 86 chr9 69346202 69346295 -72925149 - AluSg SINE Alu -192 108 20 484 261 159 38 chr9 69346600 69346864 -72924580 - L1MC/D LINE L1 -2016 5792 5497 303 330 39 29 chr9 69348071 69348174 -72923270 - L2 LINE L2 -21 3251 3148 185 301 176 25 chr9 69349733 69349932 -72921512 + L2 LINE L2 2461 2689 -625 447 281 179 30 chr9 69350117 69350352 -72921092 + Charlie8 DNA MER1_type 1 270 -2147 386 288 66 50 chr9 69351545 69351743 -72919701 + MIR SINE MIR 3 203 -59 194 276 35 58 chr9 69351826 69351913 -72919531 - L2 LINE L2 -223 3049 2965 447 236 178 40 chr9 69352127 69352301 -72919143 - MIR SINE MIR -17 245 48 363 239 133 35 chr9 69352955 69353068 -72918376 - MIR SINE MIR -138 124 1 289 240 188 0 chr9 69353079 69353175 -72918269 + L2 LINE L2 3159 3272 0 2035 133 3 3 chr9 69353282 69353582 -72917862 + AluSx SINE Alu 1 300 -12 181 355 52 45 chr9 69354105 69354260 -72917184 + L2 LINE L2 3117 3272 0 543 288 66 19 chr9 69354680 69354889 -72916555 + MIR SINE MIR 43 262 0 396 329 134 11 chr9 69355169 69355610 -72915834 + L1ME4a LINE L1 5411 5905 -216 1296 221 108 55 chr9 69356545 69356900 -72914544 - L2 LINE L2 -821 2493 2113 1129 149 142 51 chr9 69356900 69357196 -72914248 + MER33 DNA MER1_type 2 324 0 1296 221 108 55 chr9 69357196 69357238 -72914206 - L2 LINE L2 -1201 2113 2075 258 247 11 101 chr9 69357279 69357368 -72914076 + L2 LINE L2 3169 3249 -23 192 261 0 0 chr9 69357517 69357582 -72913862 + (CATA)n Simple_repeat Simple_repeat 1 65 0 257 153 0 34 chr9 69357734 69357793 -72913651 + (CATA)n Simple_repeat Simple_repeat 3 59 0 209 386 28 40 chr9 69357820 69357996 -72913448 + MIR3 SINE MIR 12 185 -23 353 302 21 0 chr9 69358763 69358859 -72912585 + MIR SINE MIR 51 148 -114 2232 95 3 3 chr9 69358862 69359158 -72912286 + AluSc SINE Alu 1 296 -13 21 57 0 0 chr9 69359172 69359207 -72912237 + AT_rich Low_complexity Low_complexity 1 35 0 4139 172 160 21 chr9 69359207 69360153 -72911291 + L1MC3 LINE L1 6709 7785 0 386 284 37 0 chr9 69360184 69360293 -72911151 + MIR SINE MIR 148 260 -2 1906 158 0 3 chr9 69360587 69360878 -72910566 + AluJb SINE Alu 1 290 -22 764 166 48 53 chr9 69361402 69361429 -72910015 - MER5A DNA MER1_type -3 186 160 2150 88 0 0 chr9 69361429 69361691 -72909753 - AluSc SINE Alu -47 262 1 764 166 48 53 chr9 69361691 69361850 -72909594 - MER5A DNA MER1_type -29 160 1 184 30 61 0 chr9 69361998 69362031 -72909413 + (TA)n Simple_repeat Simple_repeat 1 35 0 1962 128 55 6 chr9 69362422 69362749 -72908695 - MER2 DNA MER2_type -1 343 1 285 289 128 16 chr9 69362898 69363140 -72908304 + L1ME4a LINE L1 5635 5903 -218 243 0 0 0 chr9 69363682 69363709 -72907735 + (T)n Simple_repeat Simple_repeat 1 27 0 993 256 20 16 chr9 69363904 69364154 -72907290 + MIR SINE MIR 12 262 0 335 295 174 13 chr9 69366260 69366409 -72905035 + MER5B DNA MER1_type 1 173 -5 211 311 89 33 chr9 69366386 69366476 -72904968 - MIR3 SINE MIR -16 192 98 * 339 311 177 6 chr9 69366906 69367070 -72904374 + MIR SINE MIR 20 211 -51 550 325 40 4 chr9 69368180 69368429 -72903015 + MIR SINE MIR 3 260 -2 285 264 108 20 chr9 69368452 69368600 -72902844 + L1ME LINE L1 5706 5866 -255 2305 107 0 0 chr9 69368630 69368928 -72902516 - AluSx SINE Alu -13 299 2 283 269 0 39 chr9 69368952 69369030 -72902414 + MIR SINE MIR 175 249 -13 28 48 0 0 chr9 69369202 69369244 -72902200 + AT_rich Low_complexity Low_complexity 1 42 0 3255 143 84 89 chr9 69369327 69370123 -72901321 + L1MB7 LINE L1 5339 6130 -54 379 322 51 51 chr9 69370124 69370497 -72900947 + L1ME4a LINE L1 4637 5009 -1137 1917 161 61 34 chr9 69370497 69370901 -72900543 + L1MA9 LINE L1 5845 6263 -49 288 77 0 0 chr9 69370901 69370940 -72900504 + (TG)n Simple_repeat Simple_repeat 2 40 0 1917 161 61 34 chr9 69370940 69370986 -72900458 + L1MA9 LINE L1 6263 6306 -6 22 35 0 0 chr9 69371027 69371056 -72900388 + AT_rich Low_complexity Low_complexity 1 29 0 499 279 162 17 chr9 69371214 69371511 -72899933 + L1ME4a LINE L1 5338 5677 -444 543 236 133 39 chr9 69371556 69371886 -72899558 + L1ME4a LINE L1 5760 6120 -1 2203 118 0 0 chr9 69372362 69372659 -72898785 - AluSx SINE Alu -15 297 1 268 229 0 0 chr9 69373810 69373858 -72897586 - L2 LINE L2 -71 3242 3195 181 305 34 17 chr9 69374163 69374222 -72897222 - L2 LINE L2 -18 3254 3195 240 35 0 0 chr9 69374799 69374828 -72896616 + (CAT)n Simple_repeat Simple_repeat 2 30 0 206 294 0 109 chr9 69374873 69374992 -72896452 - MER5A DNA MER1_type -2 187 82 2386 96 0 0 chr9 69375008 69375310 -72896134 - AluSq SINE Alu -11 302 1 15401 114 32 6 chr9 69375981 69378336 -72893108 - Tigger1 DNA MER2_type -2 2416 1 187 351 0 27 chr9 69378558 69378632 -72892812 + MER5A DNA MER1_type 92 163 -26 1349 184 4 12 chr9 69379996 69380246 -72891198 + AluJo SINE Alu 44 291 -21 246 220 0 0 chr9 69382549 69382599 -72888845 + L2 LINE L2 3264 3313 0 24 0 0 0 chr9 69382836 69382860 -72888584 + AT_rich Low_complexity Low_complexity 1 24 0 190 342 0 13 chr9 69385300 69385376 -72886068 + L2 LINE L2 3220 3294 -19 1583 147 55 10 chr9 69387516 69387823 -72883621 - MER33 DNA MER1_type -3 321 1 2083 129 0 13 chr9 69389108 69389418 -72882026 + AluSx SINE Alu 6 311 -1 21 0 0 0 chr9 69390812 69390833 -72880611 + AT_rich Low_complexity Low_complexity 1 21 0 275 249 29 87 chr9 69391014 69391187 -72880257 + L1ME3A LINE L1 5895 6057 -113 243 239 0 0 chr9 69391216 69391283 -72880161 + (TA)n Simple_repeat Simple_repeat 1 67 0 1717 175 7 7 chr9 69391383 69391686 -72879758 + AluJo SINE Alu 1 303 -9 504 202 109 22 chr9 69391689 69391872 -72879572 + L1M4 LINE L1 4915 5113 -1033 3546 229 77 28 chr9 69391901 69393257 -72878187 + L1ME4a LINE L1 614 2048 -4598 10039 210 66 17 chr9 69393268 69395461 -72875983 + L1ME4a LINE L1 2201 4285 -2397 2108 113 3 7 chr9 69395461 69395776 -72875668 + AluSx SINE Alu 1 314 0 10039 210 66 17 chr9 69395776 69396110 -72875334 + L1ME4a LINE L1 4285 4601 -2081 1479 182 67 34 chr9 69396110 69396407 -72875037 + AluJo SINE Alu 3 309 -3 10039 210 66 17 chr9 69396407 69397460 -72873984 + L1ME4a LINE L1 4601 5971 -711 2420 179 16 47 chr9 69398117 69398671 -72872773 + L1M3e LINE L1 460 996 -6493 1614 250 58 22 chr9 69398669 69398733 -72872711 + L1M3e LINE L1 2583 2643 -4922 * 2249 179 29 19 chr9 69398733 69399153 -72872291 - MSTC LTR MaLR -4 424 1 1614 250 58 22 chr9 69399153 69399756 -72871688 + L1M3e LINE L1 2643 3274 -4291 1826 164 63 3 chr9 69399794 69400172 -72871272 + L1 LINE L1 4819 5219 -927 533 141 0 0 chr9 69400173 69400258 -72871186 + MLT1A1 LTR MaLR 1 85 -280 13771 194 29 20 chr9 69400258 69405013 -72866431 + L1MA8 LINE L1 1228 6084 -909 2376 137 28 19 chr9 69405013 69405437 -72866007 + MSTA LTR MaLR 1 428 0 13771 194 29 20 chr9 69405437 69406347 -72865097 + L1MA8 LINE L1 6084 6985 -8 459 289 178 26 chr9 69409206 69409735 -72861709 + L1ME4a LINE L1 5980 6588 -31 246 245 72 99 chr9 69410247 69410322 -72861122 - L1ME4a LINE L1 -192 5929 5853 2019 123 19 26 chr9 69410322 69410630 -72860814 + AluSx SINE Alu 7 312 0 246 245 72 99 chr9 69410630 69410826 -72860618 - L1ME4a LINE L1 -268 5853 5661 2376 92 0 0 chr9 69410848 69411152 -72860292 + AluY SINE Alu 1 304 -7 243 303 142 25 chr9 69411194 69411554 -72859890 - L1ME4a LINE L1 -2147 5661 5260 523 363 27 18 chr9 69411595 69411923 -72859521 - L1ME4a LINE L1 -938 5208 4878 207 0 0 0 chr9 69412016 69412039 -72859405 + (T)n Simple_repeat Simple_repeat 1 23 0 1816 141 188 3 chr9 69412115 69412476 -72858968 - MSTA LTR MaLR 0 428 1 327 49 0 0 chr9 69412971 69413012 -72858432 + (TG)n Simple_repeat Simple_repeat 2 42 0 1235 121 43 26 chr9 69413165 69413397 -72858047 - ORSL DNA AcHobo 0 275 40 10785 31 2 0 chr9 69414744 69416102 -72855342 - L1PA3 LINE L1 -1825 4321 2961 8767 29 1 0 chr9 69416102 69417914 -72853530 + L1PA3 LINE L1 4338 6151 -4 21 0 0 0 chr9 69417914 69417935 -72853509 + AT_rich Low_complexity Low_complexity 1 21 0 205 191 0 0 chr9 69418078 69418120 -72853324 + A-rich Low_complexity Low_complexity 1 42 0 363 23 0 0 chr9 69418510 69418554 -72852890 + (TG)n Simple_repeat Simple_repeat 2 45 0 514 171 0 0 chr9 69418827 69418915 -72852529 + Tigger5 DNA MER2_type 1 88 -2235 192 152 0 0 chr9 69419215 69419248 -72852196 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 314 283 39 43 chr9 69420082 69420174 -72851270 - L1ME4a LINE L1 -197 5924 5833 2312 101 0 0 chr9 69420174 69420472 -72850972 + AluSg SINE Alu 1 298 -12 314 283 39 43 chr9 69420472 69420609 -72850835 - L1ME4a LINE L1 -288 5833 5696 262 271 78 39 chr9 69420667 69420796 -72850648 + MLT1K LTR MaLR 86 219 -369 2171 107 7 0 chr9 69421609 69421900 -72849544 + AluSx SINE Alu 1 293 -19 282 180 0 0 chr9 69421923 69421973 -72849471 - Tigger5 DNA MER2_type -2273 50 1 1657 178 24 3 chr9 69422211 69422498 -72848946 - AluJo SINE Alu -19 293 1 299 302 116 86 chr9 69423605 69423796 -72847648 + L2 LINE L2 2921 3124 -148 2001 104 63 0 chr9 69423796 69424083 -72847361 - AluSx SINE Alu -7 305 1 299 302 116 86 chr9 69424083 69424159 -72847285 + L2 LINE L2 3124 3196 -76 31 26 0 0 chr9 69425390 69425428 -72846016 + GC_rich Low_complexity Low_complexity 1 38 0 22 94 0 0 chr9 69425465 69425529 -72845915 + GC_rich Low_complexity Low_complexity 1 64 0 368 232 12 0 chr9 69425805 69425887 -72845557 + MER82 DNA MER2_type 571 653 0 2475 105 91 5 chr9 69426154 69426562 -72844882 + LTR7 LTR ERV1 1 443 -7 568 211 234 19 chr9 69426567 69426776 -72844668 - MIR SINE MIR -6 256 3 1713 139 58 73 chr9 69426796 69427177 -72844267 + THE1C LTR MaLR 1 375 0 216 293 17 0 chr9 69427246 69427304 -72844140 + L2 LINE L2 3178 3236 -36 184 247 34 0 chr9 69428903 69428992 -72842452 + CT-rich Low_complexity Low_complexity 4 95 0 303 231 0 60 chr9 69429003 69429120 -72842324 + CT-rich Low_complexity Low_complexity 1 110 0 369 0 0 0 chr9 69429714 69429755 -72841689 + (TG)n Simple_repeat Simple_repeat 2 42 0 2160 71 0 18 chr9 69429757 69430038 -72841406 - AluSx SINE Alu -36 276 1 181 246 0 167 chr9 69430270 69430384 -72841060 + MIR3 SINE MIR 108 202 -6 315 271 8 85 chr9 69431762 69431809 -72839635 + MIR SINE MIR 125 174 -88 2489 56 0 28 chr9 69431809 69432129 -72839315 - AluY SINE Alu 0 311 1 315 271 8 85 chr9 69432129 69432210 -72839234 + MIR SINE MIR 174 243 -19 426 297 13 26 chr9 69433368 69433523 -72837921 + CT-rich Low_complexity Low_complexity 4 156 0 1460 98 0 5 chr9 69434181 69434402 -72837042 - AluSq SINE Alu 0 310 91 699 211 0 0 chr9 69434997 69435125 -72836319 - FLAM_A SINE Alu -5 128 1 883 309 104 28 chr9 69435139 69435670 -72835774 - MLT1K LTR MaLR -16 572 2 730 177 14 7 chr9 69435699 69435846 -72835598 + MLT1E3 LTR MaLR 473 620 -4 834 222 97 9 chr9 69437541 69437757 -72833687 + MER89 LTR ERV1 1 235 -324 950 222 58 131 chr9 69437796 69438238 -72833206 + MER66A LTR ERV1 72 468 -10 294 291 19 19 chr9 69438320 69438423 -72833021 + MER66A-int LTR ERV1 184 286 -6390 * 7869 207 96 59 chr9 69438409 69439532 -72831912 + MER66A-int LTR ERV1 400 1480 -5196 2466 35 0 0 chr9 69439532 69439815 -72831629 - AluY SINE Alu -11 300 18 7869 207 96 59 chr9 69439815 69441188 -72830256 + MER66A-int LTR ERV1 1480 2842 -3834 1952 268 40 25 chr9 69441187 69442221 -72829223 + MER66A-int LTR ERV1 4604 6171 -1585 * 1157 106 24 0 chr9 69442240 69442410 -72829034 + AluY SINE Alu 1 174 -137 1728 160 7 3 chr9 69442670 69442963 -72828481 + AluY SINE Alu 1 294 -17 1897 204 26 61 chr9 69443006 69443411 -72828033 + MER66A-int LTR ERV1 6151 6534 -142 1973 152 3 0 chr9 69443411 69443700 -72827744 - AluSx SINE Alu -22 290 1 1897 204 26 61 chr9 69443700 69443839 -72827605 + MER66A-int LTR ERV1 6534 6676 0 560 209 9 0 chr9 69443940 69444055 -72827389 + MER66A LTR ERV1 353 468 -10 868 253 82 31 chr9 69444139 69444491 -72826953 + MER66A LTR ERV1 97 466 -12 1018 154 82 10 chr9 69444537 69444732 -72826712 + MER89 LTR ERV1 349 557 -2 213 224 0 0 chr9 69445270 69445330 -72826114 - L2 LINE L2 -296 2976 2917 198 118 0 0 chr9 69445925 69445959 -72825485 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 830 276 58 35 chr9 69446028 69446427 -72825017 - L1ME4a LINE L1 -213 5908 5501 21 36 0 0 chr9 69446439 69446467 -72824977 + AT_rich Low_complexity Low_complexity 1 28 0 867 114 0 23 chr9 69446477 69446609 -72824835 - FLAM_C SINE Alu -3 130 2 234 264 55 44 chr9 69446974 69447065 -72824379 + L2 LINE L2 2243 2334 -980 798 327 112 22 chr9 69447069 69447813 -72823631 + L2 LINE L2 2483 3313 0 22 0 0 0 chr9 69448050 69448072 -72823372 + AT_rich Low_complexity Low_complexity 1 22 0 560 274 58 12 chr9 69448339 69448580 -72822864 - MLT1L LTR MaLR -205 410 159 1987 140 0 7 chr9 69448781 69449074 -72822370 - AluSx SINE Alu -21 291 1 2201 122 0 0 chr9 69449142 69449438 -72822006 - AluSx SINE Alu -16 296 1 5122 103 60 38 chr9 69450217 69451044 -72820400 - SVA Other Other -2 1384 539 237 226 36 12 chr9 69451145 69451229 -72820215 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 270 192 80 72 chr9 69451598 69451723 -72819721 + L2 LINE L2 2130 2255 -1059 24 53 0 0 chr9 69452192 69452230 -72819214 + AT_rich Low_complexity Low_complexity 1 38 0 626 230 110 62 chr9 69452907 69453116 -72818328 + MIR SINE MIR 20 238 -24 304 333 60 0 chr9 69453317 69453434 -72818010 + MIR SINE MIR 82 205 -57 230 366 0 0 chr9 69453928 69454010 -72817434 - L2 LINE L2 -555 2759 2678 27 0 0 0 chr9 69454107 69454134 -72817310 + AT_rich Low_complexity Low_complexity 1 27 0 258 195 70 70 chr9 69454198 69454326 -72817118 - L1ME4a LINE L1 -48 6073 5946 1613 155 27 27 chr9 69454566 69454902 -72816542 - L1MB8 LINE L1 -6 6172 5837 352 305 181 6 chr9 69455107 69455284 -72816160 - MIR SINE MIR -35 227 20 2348 86 0 3 chr9 69455311 69455613 -72815831 - AluY SINE Alu -10 301 1 1994 150 154 27 chr9 69456869 69457602 -72813842 + L1MCa LINE L1 1219 2170 -4256 2280 115 3 6 chr9 69457602 69457914 -72813530 - AluSq SINE Alu 0 313 3 1994 150 154 27 chr9 69457914 69458024 -72813420 + L1MCa LINE L1 2170 2265 -4161 1763 171 21 65 chr9 69458044 69458431 -72813013 + MLT1B LTR MaLR 20 389 -1 822 148 0 92 chr9 69458433 69458650 -72812794 + L1MCa LINE L1 2268 2464 -3962 321 271 0 0 chr9 69458868 69458938 -72812506 + L2 LINE L2 3244 3313 0 1875 136 66 0 chr9 69459593 69459910 -72811534 - MER44D DNA MER2_type 0 609 2 2208 110 0 0 chr9 69460035 69460327 -72811117 - AluSx SINE Alu -2 310 19 22 0 0 0 chr9 69461008 69461030 -72810414 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr9 69462076 69462098 -72809346 + AT_rich Low_complexity Low_complexity 1 22 0 1604 172 124 8 chr9 69463082 69463437 -72808007 + MSTD LTR MaLR 1 396 0 714 302 69 40 chr9 69463437 69464391 -72807053 + L1MEd LINE L1 531 1550 -4760 6302 247 30 56 chr9 69464400 69464846 -72806598 + L1M4 LINE L1 1 457 -6189 2141 184 60 2 chr9 69464846 69465247 -72806197 - MSTB LTR MaLR 0 426 3 6302 247 30 56 chr9 69465247 69465960 -72805484 + L1M4 LINE L1 457 1187 -5459 2015 135 0 0 chr9 69465960 69466265 -72805179 - AluSx SINE Alu 0 306 2 6302 247 30 56 chr9 69466265 69466335 -72805109 + L1M4 LINE L1 1187 1257 -5389 1491 219 7 0 chr9 69466335 69466643 -72804801 + AluJo SINE Alu 1 310 0 6302 247 30 56 chr9 69466643 69467920 -72803524 + L1M4 LINE L1 1257 2507 -4139 835 233 19 45 chr9 69467928 69468183 -72803261 - L1M4c LINE L1 -3910 2474 2227 2094 113 0 33 chr9 69468183 69468485 -72802959 - AluSx SINE Alu -20 292 1 835 233 19 45 chr9 69468485 69468538 -72802906 - L1M4c LINE L1 -4157 2227 2174 10540 191 50 41 chr9 69468540 69471443 -72800001 + L1P5 LINE L1 1521 4395 -2472 1667 91 9 0 chr9 69471443 69471674 -72799770 + AluSp SINE Alu 81 313 0 10540 191 50 41 chr9 69471674 69473160 -72798284 + L1P5 LINE L1 4395 5920 -947 198 0 0 0 chr9 69473160 69473182 -72798262 + (CAT)n Simple_repeat Simple_repeat 2 23 0 10540 191 50 41 chr9 69473182 69473774 -72797670 + L1P5 LINE L1 5920 6505 -362 314 277 0 43 chr9 69473793 69473887 -72797557 - L1MC4 LINE L1 -1339 6703 6614 * 342 259 47 0 chr9 69473804 69473889 -72797555 + L1MC4 LINE L1 6615 6703 -1339 2593 71 26 3 chr9 69473903 69474254 -72797190 + L1PB1 LINE L1 5791 6149 -2 313 167 69 0 chr9 69474282 69474384 -72797060 + L1M4 LINE L1 3571 3679 -2965 502 218 48 8 chr9 69474388 69474512 -72796932 + MER58B DNA MER1_type 203 331 -10 3028 262 67 14 chr9 69474535 69475489 -72795955 + L1MCb LINE L1 3 1007 -5038 2156 128 0 3 chr9 69475554 69475867 -72795577 + AluSx SINE Alu 1 312 0 485 178 78 23 chr9 69475869 69475998 -72795446 + L1MB7 LINE L1 6049 6184 0 198 390 0 0 chr9 69476218 69476300 -72795144 - L2 LINE L2 -5 3267 3186 4515 78 9 49 chr9 69476437 69477105 -72794339 - L1PA7 LINE L1 0 6154 5514 224 289 19 0 chr9 69477206 69477258 -72794186 - L2 LINE L2 -27 3286 3234 198 0 0 0 chr9 69477319 69477341 -72794103 + (TG)n Simple_repeat Simple_repeat 1 22 0 2049 102 0 4 chr9 69477458 69477732 -72793712 - AluSg SINE Alu -2 308 36 250 309 73 52 chr9 69477857 69477993 -72793451 - L2 LINE L2 -1 3271 3133 1428 305 88 13 chr9 69478095 69478705 -72792739 + HERVL LTR ERVL 2755 3410 -2244 1238 158 133 66 chr9 69478791 69478966 -72792478 - MER2 DNA MER2_type -7 338 176 2220 112 3 3 chr9 69478966 69479269 -72792175 + AluSq SINE Alu 1 303 -10 1238 158 133 66 chr9 69479269 69479410 -72792034 - MER2 DNA MER2_type -169 176 1 1462 346 137 60 chr9 69479412 69479747 -72791697 + HERVL LTR ERVL 3582 3890 -1874 2724 70 21 103 chr9 69479747 69480231 -72791213 + MLT2A1 LTR ERVL 1 444 0 1462 346 137 60 chr9 69480231 69480748 -72790696 + HERVL LTR ERVL 3890 4500 -1264 337 148 0 0 chr9 69480750 69480804 -72790640 + MSTB LTR MaLR 1 54 -372 2285 171 16 3 chr9 69480877 69481258 -72790186 + MSTB LTR MaLR 41 426 0 648 248 152 23 chr9 69481275 69481788 -72789656 + MLT1F LTR MaLR 3 591 -4 500 327 70 26 chr9 69481798 69482110 -72789334 + HERVL LTR ERVL 4475 4800 -685 852 299 36 30 chr9 69482885 69483249 -72788195 + L2 LINE L2 2947 3312 -1 2110 82 48 17 chr9 69484740 69485034 -72786410 - AluY SINE Alu -8 303 1 592 203 42 8 chr9 69485267 69485385 -72786059 - FLAM_A SINE Alu -11 122 1 358 258 38 57 chr9 69485743 69485952 -72785492 - L1ME4a LINE L1 -94 6027 5823 23 0 0 0 chr9 69486118 69486141 -72785303 + AT_rich Low_complexity Low_complexity 1 23 0 1744 97 116 11 chr9 69486150 69486417 -72785027 + AluSx SINE Alu 1 295 -17 8185 56 1 0 chr9 69486527 69487492 -72783952 + LTR5 LTR ERVK 1 966 -3 236 185 0 86 chr9 69487518 69487599 -72783845 - L1ME4a LINE L1 -338 5783 5710 248 286 0 0 chr9 69487698 69487754 -72783690 + MIR3 SINE MIR 104 159 -49 2239 100 10 0 chr9 69488279 69488589 -72782855 - AluSq SINE Alu 0 313 1 2103 102 7 0 chr9 69488654 69488947 -72782497 - AluSg SINE Alu -13 297 3 2791 16 0 0 chr9 69489186 69489493 -72781951 - AluYb8 SINE Alu -11 307 1 407 40 0 0 chr9 69489493 69489543 -72781901 - AluY SINE Alu -22 289 240 1373 42 0 79 chr9 69489544 69489733 -72781711 - AluY SINE Alu -137 174 1 26 50 0 0 chr9 69490062 69490102 -72781342 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr9 69490555 69490586 -72780858 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 69490597 69490618 -72780826 + GC_rich Low_complexity Low_complexity 1 21 0 245 129 0 16 chr9 69491753 69491815 -72779629 + (TTTTA)n Simple_repeat Simple_repeat 4 64 0 827 244 15 0 chr9 69493580 69493777 -72777667 + MER3 DNA MER1_type 10 209 0 330 286 95 105 chr9 69494106 69494400 -72777044 - L2 LINE L2 0 3272 2982 417 257 216 50 chr9 69494549 69494771 -72776673 + MIR SINE MIR 1 259 -3 264 274 0 16 chr9 69497753 69497815 -72773629 + MIR3 SINE MIR 97 157 -51 258 262 171 27 chr9 69497960 69498126 -72773318 + MIR3 SINE MIR 2 191 -69 353 271 164 14 chr9 69498418 69498558 -72772886 - MIR3 SINE MIR -18 190 30 1905 146 3 44 chr9 69498748 69499069 -72772375 - AluJo SINE Alu -4 308 1 1945 202 109 32 chr9 69499282 69499812 -72771632 - MER82 DNA MER2_type -82 571 1 28 29 0 0 chr9 69500018 69500053 -72771391 + AT_rich Low_complexity Low_complexity 1 35 0 185 200 0 0 chr9 69501689 69501724 -72769720 + L2 LINE L2 3277 3311 -2 291 283 100 0 chr9 69502820 69502940 -72768504 - MER94 DNA DNA -1 133 2 1651 139 3 48 chr9 69503293 69503588 -72767856 + AluJb SINE Alu 1 282 -30 207 0 0 0 chr9 69503591 69503614 -72767830 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 338 227 91 19 chr9 69503620 69503774 -72767670 + L1ME4a LINE L1 5955 6119 -2 288 240 0 13 chr9 69504794 69504869 -72766575 - MLT1K LTR MaLR 0 588 515 1524 210 0 39 chr9 69505551 69505856 -72765588 - AluJo SINE Alu -17 295 3 202 350 70 0 chr9 69506346 69506446 -72764998 - L2 LINE L2 -3 3310 3204 269 218 35 58 chr9 69506650 69506737 -72764707 + MER20B DNA MER1_type 1 85 -698 216 0 0 0 chr9 69507520 69507544 -72763900 + (T)n Simple_repeat Simple_repeat 1 24 0 1106 54 7 0 chr9 69507593 69507740 -72763704 - L1PA4 LINE L1 0 6155 6008 1517 158 70 38 chr9 69507897 69508270 -72763174 - L1MB8 LINE L1 -1 6177 5793 856 134 16 0 chr9 69508271 69508398 -72763046 - AluSq/x SINE Alu -183 129 1 259 212 109 36 chr9 69510037 69510174 -72761270 + L1MEd LINE L1 1242 1388 -5028 316 260 140 25 chr9 69510374 69510659 -72760785 + L1MEd LINE L1 1237 1663 -4872 1265 133 5 24 chr9 69510689 69510899 -72760545 + THE1B LTR MaLR 1 206 -158 1891 128 51 69 chr9 69512109 69512499 -72758945 - MSTB LTR MaLR -43 383 1 822 252 51 85 chr9 69512500 69512853 -72758591 + L2 LINE L2 2967 3307 -6 222 299 0 30 chr9 69512891 69512958 -72758486 - L2 LINE L2 -3 3310 3246 296 308 69 15 chr9 69513053 69513183 -72758261 + L3 LINE CR1 1190 1326 -251 2165 122 3 0 chr9 69513408 69513703 -72757741 + AluSx SINE Alu 1 296 -16 225 402 34 29 chr9 69513892 69514101 -72757343 + L2 LINE L2 2827 3036 -236 336 190 13 13 chr9 69514206 69514285 -72757159 + Charlie3 DNA MER1_type 3 81 -2629 243 88 0 0 chr9 69514439 69514473 -72756971 + (TTA)n Simple_repeat Simple_repeat 3 36 0 289 364 63 7 chr9 69514473 69514607 -72756837 - MIR3 SINE MIR -60 148 4 * 330 331 175 34 chr9 69514607 69514721 -72756723 - L3 LINE CR1 -635 942 848 3033 188 7 18 chr9 69514721 69515289 -72756155 + MER68 LTR ERV1 1 562 0 330 331 175 34 chr9 69515289 69515576 -72755868 - L3 LINE CR1 -729 848 482 8676 54 1 0 chr9 69515699 69516862 -72754582 - L1P LINE L1 -3399 2747 1584 980 176 13 0 chr9 69516962 69517115 -72754329 + FRAM SINE Alu 1 150 -26 3835 184 56 56 chr9 69517121 69517626 -72753818 + L1MC3 LINE L1 6593 7097 -688 233 125 25 0 chr9 69517626 69517666 -72753778 + MLT1F1 LTR MaLR 50 90 -477 3835 184 56 56 chr9 69517666 69518168 -72753276 + L1MC3 LINE L1 7096 7639 -146 1626 102 0 4 chr9 69518268 69518504 -72752940 - L1P LINE L1 -5911 235 1 200 243 0 0 chr9 69518608 69518645 -72752799 + L2 LINE L2 3183 3219 -94 305 77 0 0 chr9 69519765 69519817 -72751627 + L1MA3 LINE L1 6252 6303 -2 214 260 146 31 chr9 69519832 69519928 -72751516 + MIR SINE MIR 156 262 0 294 254 0 0 chr9 69519955 69520014 -72751430 + MIR SINE MIR 117 175 -87 498 271 208 8 chr9 69520026 69520262 -72751182 - MLT1G LTR MaLR -8 582 300 2236 123 27 15 chr9 69520262 69520595 -72750849 + MER1B DNA MER1_type 1 337 0 359 243 257 0 chr9 69520595 69520731 -72750713 - L1MDb LINE L1 -6095 314 144 8244 68 0 0 chr9 69520846 69521986 -72749458 + L1P LINE L1 1959 3098 -3048 7051 80 2 18 chr9 69522086 69523115 -72748329 - L1P LINE L1 -4714 1432 420 209 182 0 0 chr9 69523577 69523610 -72747834 + (TG)n Simple_repeat Simple_repeat 1 33 0 1970 156 38 0 chr9 69523741 69524112 -72747332 - MLT1B LTR MaLR 0 390 6 3198 137 46 43 chr9 69524566 69525221 -72746223 + L1MB2 LINE L1 5515 6171 0 200 83 0 28 chr9 69526518 69526554 -72744890 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2884 141 19 19 chr9 69527362 69527881 -72743563 - L1MB3 LINE L1 -7 6176 5658 2789 228 48 14 chr9 69528439 69529434 -72742010 - L1M4 LINE L1 -3149 3495 2459 543 146 0 0 chr9 69529479 69529568 -72741876 + L1MB3 LINE L1 6030 6118 -65 1798 199 65 89 chr9 69529574 69530246 -72741198 - L1M4 LINE L1 -5498 1044 389 225 159 0 0 chr9 69531612 69531656 -72739788 + (CA)n Simple_repeat Simple_repeat 1 44 0 223 245 0 0 chr9 69532100 69532149 -72739295 + (TCTG)n Simple_repeat Simple_repeat 3 51 0 1626 83 9 5 chr9 69532766 69532984 -72738460 - AluY SINE Alu -92 219 1 526 218 42 12 chr9 69532985 69533150 -72738294 + L1MDa LINE L1 1792 1961 -4579 * 1754 245 171 17 chr9 69533130 69533499 -72737945 + L1MDa LINE L1 3288 3599 -2941 1331 178 4 0 chr9 69533499 69533730 -72737714 - MER46A DNA MER2_type -2 234 3 1754 245 171 17 chr9 69533730 69533995 -72737449 + L1MDa LINE L1 3599 3822 -2718 2377 119 112 5 chr9 69533995 69534380 -72737064 + MSTA LTR MaLR 1 426 -2 1754 245 171 17 chr9 69534380 69534665 -72736779 + L1MDa LINE L1 3822 4349 -2191 1946 120 7 7 chr9 69534878 69535154 -72736290 + AluSx SINE Alu 3 278 -34 15754 27 0 0 chr9 69535154 69537434 -72734010 + L1PA2 LINE L1 3439 5717 -438 1579 25 0 25 chr9 69537535 69537765 -72733679 + L1PA2 LINE L1 5963 6155 0 353 245 166 0 chr9 69537770 69537921 -72733523 + MER112 DNA MER1_type 85 260 0 916 168 11 6 chr9 69537993 69538172 -72733272 + MER20B DNA MER1_type 39 218 -1 25 31 0 0 chr9 69539216 69539248 -72732196 + AT_rich Low_complexity Low_complexity 1 32 0 200 269 0 19 chr9 69540594 69540646 -72730798 - L2 LINE L2 -36 3236 3186 331 203 29 43 chr9 69540988 69541057 -72730387 - MIR SINE MIR -183 79 12 271 311 58 0 chr9 69541219 69541322 -72730122 - L2 LINE L2 0 3313 3205 564 279 10 67 chr9 69541326 69541534 -72729910 + L2 LINE L2 3118 3313 0 184 171 0 0 chr9 69541533 69541568 -72729876 - L2 LINE L2 -103 3210 3176 * 9992 205 44 34 chr9 69542020 69543787 -72727657 - L1MB8 LINE L1 -2 6176 4428 1008 98 0 0 chr9 69543787 69543919 -72727525 - FLAM_C SINE Alu -1 132 1 9992 205 44 34 chr9 69543919 69545474 -72725970 - L1MB8 LINE L1 -1750 4428 2808 1347 205 14 30 chr9 69545474 69545771 -72725673 - AluJo SINE Alu -20 292 1 9992 205 44 34 chr9 69545771 69546457 -72724987 - L1MB8 LINE L1 -3370 2808 2130 15598 161 74 7 chr9 69546457 69546707 -72724737 + Tigger3(Golem) DNA MER2_type 1 233 -2796 2084 96 35 3 chr9 69546707 69546989 -72724455 - AluSq SINE Alu -17 296 6 15598 161 74 7 chr9 69546989 69549575 -72721869 + Tigger3(Golem) DNA MER2_type 233 3027 -2 2405 163 51 71 chr9 69549615 69550180 -72721264 + MLT2B3 LTR ERVL 1 554 0 627 304 45 54 chr9 69550181 69550513 -72720931 - L1MEc LINE L1 -4191 2205 1877 358 313 46 56 chr9 69550813 69551008 -72720436 - MLT1K LTR MaLR -291 297 105 560 262 28 0 chr9 69551047 69551188 -72720256 - MER63A DNA MER1_type -4 206 62 1885 157 11 0 chr9 69551319 69551606 -72719838 - AluJb SINE Alu -22 290 1 1668 183 69 14 chr9 69551611 69552031 -72719413 - L1MB7 LINE L1 0 6184 5742 293 242 129 16 chr9 69552599 69552723 -72718721 + MIR SINE MIR 125 262 0 373 305 0 9 chr9 69554368 69554473 -72716971 - MIR3 SINE MIR -9 199 96 360 177 0 0 chr9 69554473 69554535 -72716909 - MLT1A2 LTR MaLR 0 390 329 467 218 0 10 chr9 69554538 69554639 -72716805 + MLT1A2 LTR MaLR 218 317 -57 573 257 28 55 chr9 69554679 69554897 -72716547 - MLT1A2 LTR MaLR -161 213 2 560 310 16 27 chr9 69556348 69556606 -72714838 + MER102b DNA MER1_type 37 291 -50 2478 149 92 10 chr9 69557392 69557882 -72713562 - L1MB8 LINE L1 -3 6175 5646 2124 156 63 37 chr9 69557882 69558408 -72713036 + MLT2A2 LTR ERVL 1 554 0 1084 154 6 0 chr9 69558411 69558593 -72712851 - L1MB8 LINE L1 -537 5647 5465 398 253 0 0 chr9 69559016 69559115 -72712329 - MER103 DNA DNA -65 101 3 191 237 0 0 chr9 69559228 69559266 -72712178 - L2 LINE L2 -12 3301 3264 3665 163 164 31 chr9 69560881 69561075 -72710369 + L1MC3 LINE L1 6752 6919 -866 195 100 0 0 chr9 69561075 69561105 -72710339 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3665 163 164 31 chr9 69561105 69561720 -72709724 + L1MC3 LINE L1 6919 7697 -88 2745 116 19 9 chr9 69561720 69562143 -72709301 + MSTA LTR MaLR 1 427 -1 3665 163 164 31 chr9 69562143 69562238 -72709206 + L1MC3 LINE L1 7697 7778 -7 2070 108 0 46 chr9 69562528 69562853 -72708591 + AluSg SINE Alu 1 310 0 500 255 123 15 chr9 69562881 69563085 -72708359 + L1ME3A LINE L1 5940 6165 -5 2226 85 0 67 chr9 69563111 69563439 -72708005 + AluY SINE Alu 1 306 -5 196 316 256 11 chr9 69563863 69564522 -72706922 - L2 LINE L2 -339 2975 2155 411 243 103 0 chr9 69564811 69564918 -72706526 + L2 LINE L2 3196 3313 0 391 340 76 16 chr9 69565246 69565496 -72705948 + L1MC5 LINE L1 7249 7513 -448 294 264 132 8 chr9 69565591 69565833 -72705611 + L1ME4a LINE L1 5833 6104 -17 2363 131 94 23 chr9 69565945 69566379 -72705065 - MLT1C LTR MaLR 0 467 3 1811 151 7 7 chr9 69566494 69566786 -72704658 - AluSx SINE Alu -18 294 3 339 123 18 0 chr9 69566789 69566846 -72704598 - AluJb SINE Alu -166 136 79 346 296 19 9 chr9 69567547 69567655 -72703789 - MIR3 SINE MIR -8 200 92 210 225 0 0 chr9 69567751 69567791 -72703653 - L2 LINE L2 -10 3303 3264 198 103 0 0 chr9 69568370 69568399 -72703045 + (GA)n Simple_repeat Simple_repeat 2 30 0 592 186 264 0 chr9 69568446 69568586 -72702858 + MIR SINE MIR 62 238 -24 5130 74 24 5 chr9 69569051 69569792 -72701652 + MER4E LTR ERV1 1 755 -11 3882 272 77 21 chr9 69570464 69570591 -72700853 + L1M4b LINE L1 11 129 -6730 1929 90 0 4 chr9 69570591 69570884 -72700560 + AluY SINE Alu 26 317 0 2305 60 46 0 chr9 69570886 69571167 -72700277 + AluY SINE Alu 1 294 -17 3882 272 77 21 chr9 69571167 69572184 -72699260 + L1M4b LINE L1 129 1088 -5771 387 105 0 0 chr9 69572184 69572241 -72699203 + (TG)n Simple_repeat Simple_repeat 2 58 0 3882 272 77 21 chr9 69572241 69572353 -72699091 + L1M4b LINE L1 1088 1192 -5667 1783 185 105 10 chr9 69572353 69572742 -72698702 + MSTB LTR MaLR 1 426 0 3882 272 77 21 chr9 69572742 69572893 -72698551 + L1M4b LINE L1 1192 1505 -5354 1616 204 138 30 chr9 69572900 69573394 -72698050 - LTR10B LTR ERV1 0 547 1 32883 205 32 33 chr9 69573399 69581164 -72690280 - HERVI LTR ERV1 -2 7783 26 1353 214 82 53 chr9 69581189 69581662 -72689782 - LTR10B LTR ERV1 0 505 19 1881 247 33 35 chr9 69581684 69581803 -72689641 + L1M4b LINE L1 1510 1628 -5331 1570 208 21 7 chr9 69581803 69582091 -72689353 + AluJo SINE Alu 1 292 -20 1881 247 33 35 chr9 69582091 69582877 -72688567 + L1M4b LINE L1 1628 2416 -4543 537 56 0 0 chr9 69583947 69584018 -72687426 - L1P LINE L1 -870 5276 5206 6549 50 2 6 chr9 69584018 69584592 -72686852 + L1PA5 LINE L1 5330 5906 -248 2357 54 0 0 chr9 69584592 69584914 -72686530 + AluY SINE Alu 1 322 0 6549 50 2 6 chr9 69584914 69585157 -72686287 + L1PA5 LINE L1 5906 6148 -6 291 83 83 0 chr9 69585814 69585862 -72685582 - MER68 LTR ERV1 -7 555 504 383 171 23 34 chr9 69585893 69585981 -72685463 - Tigger5 DNA MER2_type 0 2323 2237 375 130 0 0 chr9 69585990 69586044 -72685400 - Tigger5 DNA MER2_type -2269 54 1 2419 166 69 2 chr9 69586044 69586507 -72684937 - MER68 LTR ERV1 -68 494 1 233 295 40 67 chr9 69587056 69587205 -72684239 - L2 LINE L2 -842 2472 2328 679 214 80 5 chr9 69587310 69587497 -72683947 + L1MC4 LINE L1 7689 7889 -153 284 247 0 0 chr9 69587508 69587576 -72683868 + L1MC4 LINE L1 7728 8029 -13 210 208 0 0 chr9 69588087 69588135 -72683309 + CT-rich Low_complexity Low_complexity 1 48 0 257 335 21 64 chr9 69588440 69588628 -72682816 - L3 LINE CR1 -754 823 644 254 301 14 62 chr9 69588931 69589077 -72682367 - 7SK RNA RNA -49 144 6 863 193 10 42 chr9 69589106 69589298 -72682146 - AluJo SINE Alu 0 312 127 955 184 0 0 chr9 69590070 69590222 -72681222 + AluSg/x SINE Alu 137 288 -24 31 44 0 0 chr9 69590385 69590430 -72681014 + AT_rich Low_complexity Low_complexity 1 45 0 1599 166 146 9 chr9 69590591 69590633 -72680811 - MLT2C1 LTR ERVL 0 397 362 243 0 0 0 chr9 69590633 69590660 -72680784 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 315 0 0 0 chr9 69590659 69590694 -72680750 + (GA)n Simple_repeat Simple_repeat 2 36 0 1599 166 146 9 chr9 69590660 69591000 -72680444 - MLT2C1 LTR ERVL -35 362 1 1148 158 308 4 chr9 69591016 69591250 -72680194 - AluSx SINE Alu -7 305 1 515 244 154 32 chr9 69591321 69591542 -72679902 + MIR SINE MIR 9 256 -6 339 193 0 0 chr9 69591544 69591627 -72679817 + CT-rich Low_complexity Low_complexity 2 84 0 245 274 0 0 chr9 69592414 69592465 -72678979 + polypurine Low_complexity Low_complexity 3 53 0 2040 176 138 103 chr9 69592708 69593503 -72677941 - LTR1B LTR ERV1 -3 823 1 592 139 0 28 chr9 69593742 69593850 -72677594 - ORSL DNA AcHobo -6 269 165 385 125 9 143 chr9 69593851 69593963 -72677481 + L1MB3 LINE L1 6084 6180 0 904 85 0 35 chr9 69594347 69594488 -72676956 - L1PA15 LINE L1 -4 6161 6026 578 144 18 18 chr9 69594556 69594667 -72676777 - ORSL DNA AcHobo -161 114 4 23 0 0 0 chr9 69595816 69595839 -72675605 + AT_rich Low_complexity Low_complexity 1 23 0 400 301 10 30 chr9 69596211 69596271 -72675173 - L1ME LINE L1 -306 5815 5755 992 213 125 114 chr9 69596271 69596990 -72674454 - LTR8A LTR ERV1 0 727 1 400 301 10 30 chr9 69596990 69597132 -72674312 - L1ME LINE L1 -366 5755 5617 2049 146 0 7 chr9 69597134 69597436 -72674008 - AluSx SINE Alu -12 300 1 355 268 50 73 chr9 69597493 69597672 -72673772 - L1ME LINE L1 -2379 5429 5255 28 29 0 0 chr9 69597706 69597741 -72673703 + AT_rich Low_complexity Low_complexity 1 35 0 340 209 202 16 chr9 69598165 69598294 -72673150 - MLT1H LTR MaLR -249 300 148 339 316 102 11 chr9 69598518 69598705 -72672739 - L1ME LINE L1 -1870 4276 4073 3866 187 8 16 chr9 69599397 69600128 -72671316 - MER44D DNA MER2_type -8 597 1 325 298 70 58 chr9 69600325 69600496 -72670948 + L1MEd LINE L1 27 199 -5920 306 351 34 27 chr9 69600573 69600721 -72670723 + L1MEd LINE L1 333 481 -5638 301 257 64 64 chr9 69600720 69600860 -72670584 + L1MEd LINE L1 4 143 -5976 * 824 233 44 17 chr9 69600935 69601115 -72670329 + MER5A DNA MER1_type 5 189 0 27 73 0 0 chr9 69601244 69601299 -72670145 + AT_rich Low_complexity Low_complexity 1 55 0 1453 153 25 21 chr9 69601388 69601629 -72669815 + 7SLRNA srpRNA srpRNA 9 250 -70 573 176 92 0 chr9 69601631 69601750 -72669694 + AluJo/FRAM SINE Alu 164 293 -19 12720 137 11 17 chr9 69601841 69602462 -72668982 + L1MA2 LINE L1 2851 3474 -2830 3080 66 104 0 chr9 69602462 69602902 -72668542 + LTR19A LTR ERV1 1 486 0 12720 137 11 17 chr9 69602902 69603759 -72667685 + L1MA2 LINE L1 3474 4335 -1969 1818 142 36 0 chr9 69603759 69604040 -72667404 + AluSx SINE Alu 4 294 -18 12720 137 11 17 chr9 69604040 69606030 -72665414 + L1MA2 LINE L1 4335 6303 -1 265 59 0 0 chr9 69606086 69606120 -72665324 + LTR51 LTR ERV1 1 34 -637 262 265 0 0 chr9 69606318 69606386 -72665058 - MLT1K LTR MaLR -10 578 511 211 311 16 0 chr9 69607308 69607369 -72664075 - L2 LINE L2 -8 3264 3203 2806 80 3 6 chr9 69608072 69608437 -72663007 - THE1B LTR MaLR 0 364 1 488 276 0 16 chr9 69609042 69609169 -72662275 - MIR SINE MIR -74 188 64 427 333 15 0 chr9 69609563 69609695 -72661749 + L2 LINE L2 3139 3272 0 1717 161 34 3 chr9 69609905 69610324 -72661120 - AluJb SINE Alu 0 428 1 349 364 87 0 chr9 69611098 69611271 -72660173 + MIR SINE MIR 62 249 -13 508 290 28 34 chr9 69611326 69611502 -72659942 - MIR SINE MIR -70 192 18 337 281 16 16 chr9 69613669 69613790 -72657654 - MIR SINE MIR -71 191 71 248 175 70 35 chr9 69614681 69614738 -72656706 + L2 LINE L2 3250 3308 -5 829 278 20 20 chr9 69615433 69615681 -72655763 + L2 LINE L2 3061 3308 -5 371 223 9 0 chr9 69615681 69615793 -72655651 + GA-rich Low_complexity Low_complexity 1 113 0 317 274 134 51 chr9 69615801 69615958 -72655486 - L2 LINE L2 -7 3265 3096 217 286 0 0 chr9 69617584 69617640 -72653804 + (CA)n Simple_repeat Simple_repeat 1 56 0 22 35 0 0 chr9 69617971 69618000 -72653444 + AT_rich Low_complexity Low_complexity 1 29 0 1123 158 12 0 chr9 69618109 69618280 -72653164 + FRAM SINE Alu 1 172 -4 2157 108 50 42 chr9 69619088 69619449 -72651995 + THE1B LTR MaLR 1 364 0 863 264 144 19 chr9 69620069 69620500 -72650944 - MLT1J LTR MaLR -9 502 18 415 306 171 10 chr9 69620511 69620704 -72650740 + MIR SINE MIR 4 227 -35 203 338 52 0 chr9 69620778 69620855 -72650589 + L2 LINE L2 3190 3270 -2 * 348 287 63 16 chr9 69620834 69620973 -72650471 + MIR SINE MIR 3 159 -67 1211 246 61 55 chr9 69620979 69621484 -72649960 + LTR33 LTR ERVL 12 519 -2 352 247 0 0 chr9 69621497 69621578 -72649866 + MIR SINE MIR 163 243 -19 257 86 0 0 chr9 69621732 69621767 -72649677 - U2 snRNA snRNA -153 35 1 302 299 36 66 chr9 69623162 69623299 -72648145 + L2 LINE L2 2904 3036 -236 560 309 88 6 chr9 69623342 69623523 -72647921 + MIR SINE MIR 42 237 -25 2079 127 0 10 chr9 69623909 69624216 -72647228 - AluSx SINE Alu -8 304 1 2944 213 36 8 chr9 69624555 69625189 -72646255 - MER82 DNA MER2_type 0 653 2 325 242 0 0 chr9 69625381 69625447 -72645997 + MIR SINE MIR 167 232 -30 946 240 158 49 chr9 69625461 69626056 -72645388 - HAL1 LINE L1 -1146 1361 702 2923 118 11 8 chr9 69626056 69626530 -72644914 - Tigger3b DNA MER2_type 0 1232 758 2334 136 60 5 chr9 69626525 69626922 -72644522 - MSTB LTR MaLR -7 419 1 * 3866 153 29 17 chr9 69626924 69627688 -72643756 - Tigger3b DNA MER2_type -457 774 2 280 235 20 31 chr9 69627691 69627789 -72643655 - HAL1 LINE L1 -1808 699 603 300 220 154 11 chr9 69627870 69627961 -72643483 - HAL1 LINE L1 -2027 480 377 430 194 48 159 chr9 69627981 69628208 -72643236 - HAL1 LINE L1 -2271 236 35 318 132 0 0 chr9 69630685 69630738 -72640706 + (TG)n Simple_repeat Simple_repeat 2 54 0 677 297 0 36 chr9 69630748 69630943 -72640501 + MIR3 SINE MIR 18 205 -3 2053 127 46 30 chr9 69631342 69631711 -72639733 + THE1C LTR MaLR 1 375 0 830 279 44 9 chr9 69632235 69632464 -72638980 - MIR SINE MIR -24 238 2 190 303 53 13 chr9 69632481 69632557 -72638887 + MIR SINE MIR 77 155 -107 2213 235 42 19 chr9 69632587 69633128 -72638316 - MLT2B3 LTR ERVL 0 554 1 852 283 129 23 chr9 69633891 69634378 -72637066 + MLT1G1 LTR MaLR 13 551 -44 3966 189 57 37 chr9 69634555 69634794 -72636650 + L1MA10 LINE L1 4983 5216 -1118 2001 122 0 14 chr9 69634794 69635080 -72636364 + AluSx SINE Alu 30 311 -1 3966 189 57 37 chr9 69635080 69636119 -72635325 + L1MA10 LINE L1 5216 6294 -40 220 286 48 24 chr9 69636570 69636654 -72634790 - L2 LINE L2 -1 3271 3186 496 311 55 26 chr9 69636705 69636978 -72634466 - MLT1J LTR MaLR 0 511 231 508 311 129 50 chr9 69637169 69637326 -72634118 - L2 LINE L2 -191 3081 2938 2229 98 3 0 chr9 69637326 69637621 -72633823 + AluSx SINE Alu 1 296 -16 508 311 129 50 chr9 69637621 69638114 -72633330 - L2 LINE L2 -334 2938 2382 218 265 53 80 chr9 69638178 69638329 -72633115 + L2 LINE L2 2614 2760 -554 574 279 91 29 chr9 69638332 69638540 -72632904 - MIR SINE MIR -15 247 27 302 98 0 20 chr9 69638540 69638591 -72632853 + MADE1 DNA Mariner 31 80 0 252 342 63 18 chr9 69638819 69638930 -72632514 - MIR SINE MIR -70 138 23 795 221 0 35 chr9 69639093 69639197 -72632247 + FRAM SINE Alu 1 98 -214 1228 249 48 39 chr9 69639197 69639634 -72631810 - LTR47B LTR ERVL 0 443 3 795 221 0 35 chr9 69639634 69639701 -72631743 + FRAM SINE Alu 98 166 -10 255 31 0 0 chr9 69639799 69639831 -72631613 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1914 162 100 3 chr9 69640791 69641180 -72630264 + LTR51 LTR ERV1 245 671 0 492 313 51 27 chr9 69641206 69641373 -72630071 + L1M4 LINE L1 2302 2479 -3667 2405 163 44 5 chr9 69641373 69641785 -72629659 + MSTA LTR MaLR 1 428 0 492 313 51 27 chr9 69641785 69641873 -72629571 + L1M4 LINE L1 2479 2563 -3583 472 285 99 42 chr9 69642673 69643196 -72628248 + L1M4 LINE L1 4103 4655 -1491 334 202 11 11 chr9 69643960 69644054 -72627390 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 422 279 63 13 chr9 69645021 69645179 -72626265 + MIR3 SINE MIR 12 177 -31 654 304 22 27 chr9 69645480 69645704 -72625740 - MIR SINE MIR -4 258 36 1132 193 96 0 chr9 69645769 69645987 -72625457 - MER8 DNA MER2_type 0 239 1 1603 209 0 25 chr9 69645991 69646311 -72625133 - AluJo SINE Alu 0 312 1 230 302 26 74 chr9 69646319 69646508 -72624936 + L2 LINE L2 2337 2516 -798 372 256 61 24 chr9 69646545 69646697 -72624747 - LTR33 LTR ERVL -8 513 356 1571 176 48 28 chr9 69646697 69647049 -72624395 + MLT1C LTR MaLR 3 361 -106 1033 163 12 0 chr9 69647058 69647224 -72624220 - FRAM SINE Alu -8 168 1 356 67 0 0 chr9 69647265 69647310 -72624134 + MLT1C LTR MaLR 346 390 0 1086 208 17 80 chr9 69647449 69647897 -72623547 - L1MC5 LINE L1 -858 7103 6718 1421 206 5 65 chr9 69648171 69648539 -72622905 + MLT1A2 LTR MaLR 1 346 -28 1372 153 13 4 chr9 69648548 69648784 -72622660 - L1MB3 LINE L1 -3 6180 5943 2631 179 21 46 chr9 69648852 69648892 -72622552 - MLT2B1 LTR ERVL 0 520 481 717 79 0 0 chr9 69648892 69648993 -72622451 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 2631 179 21 46 chr9 69648993 69649478 -72621966 - MLT2B1 LTR ERVL -39 481 8 549 223 16 1 chr9 69649887 69650016 -72621428 - LTR49 LTR ERV1 0 595 484 847 199 18 18 chr9 69650018 69650184 -72621260 - LTR49-int LTR ERV1 -2812 3519 3354 9805 171 26 53 chr9 69650214 69652270 -72619174 - LTR49-int LTR ERV1 -2960 3371 1372 508 155 29 10 chr9 69652402 69652505 -72618939 - LTR49-int LTR ERV1 -4939 1392 1288 424 225 0 0 chr9 69652553 69652624 -72618820 - tRNA-Glu-GAG tRNA tRNA 0 75 5 1948 156 7 7 chr9 69653353 69653661 -72617783 - AluJb SINE Alu -4 308 1 2645 168 62 36 chr9 69654954 69655217 -72616227 - MER34C LTR ERV1 -3 582 328 1494 106 65 5 chr9 69655217 69655434 -72616010 - MER30 DNA MER1_type 0 230 1 2645 168 62 36 chr9 69655434 69655674 -72615770 - MER34C LTR ERV1 -257 328 60 2112 225 35 113 chr9 69655674 69656326 -72615118 + LTR8 LTR ERV1 1 588 -103 2335 110 0 0 chr9 69656326 69656635 -72614809 - AluSx SINE Alu -3 309 1 2112 225 35 113 chr9 69656635 69656732 -72614712 + LTR8 LTR ERV1 588 691 0 2645 168 62 36 chr9 69656732 69656787 -72614657 - MER34C LTR ERV1 -525 60 8 214 301 146 75 chr9 69656909 69657012 -72614432 - MIR SINE MIR -3 259 165 2229 122 0 10 chr9 69657012 69657323 -72614121 - AluSx SINE Alu -4 308 1 214 301 146 75 chr9 69657323 69657418 -72614026 - MIR SINE MIR -97 165 47 1380 147 28 8 chr9 69657474 69657914 -72613530 - LTR54 LTR ERV1 0 510 1 831 226 5 21 chr9 69657918 69658108 -72613336 - LTR8 LTR ERV1 0 691 505 1557 152 8 16 chr9 69658108 69658365 -72613079 - MER57A LTR ERV1 -148 255 1 1255 160 22 13 chr9 69658365 69658596 -72612848 - MER57A-int LTR ERV1 0 7537 7305 516 153 145 24 chr9 69658596 69658720 -72612724 - LTR54B LTR ERV1 -357 141 3 2353 151 66 8 chr9 69658720 69659172 -72612272 - MER57A-int LTR ERV1 -391 7146 6592 1058 188 112 29 chr9 69659195 69659533 -72611911 + MSTD LTR MaLR 1 396 0 953 282 132 5 chr9 69659543 69660039 -72611405 - L2 LINE L2 0 3313 2682 354 306 27 0 chr9 69660059 69660170 -72611274 + MIR SINE MIR 79 192 -70 400 104 73 0 chr9 69660525 69660621 -72610823 + GA-rich Low_complexity Low_complexity 4 106 0 468 257 95 14 chr9 69660885 69661033 -72610411 - MIR SINE MIR -85 177 18 2227 121 3 6 chr9 69661155 69661468 -72609976 - AluSx SINE Alu 0 312 1 1125 187 197 20 chr9 69662541 69662846 -72608598 + MLT1A1 LTR MaLR 1 359 -6 3585 124 40 6 chr9 69662875 69663421 -72608023 - MER34B LTR ERV1 0 565 1 2000 184 76 40 chr9 69664847 69664889 -72606555 - MLT1D LTR MaLR -13 492 453 2135 101 22 0 chr9 69664889 69665203 -72606241 - AluSg SINE Alu 0 320 1 790 200 0 22 chr9 69665206 69665341 -72606103 - FLAM_A SINE Alu -1 132 1 2000 184 76 40 chr9 69665341 69665766 -72605678 - MLT1D LTR MaLR -53 452 3 1700 160 7 18 chr9 69666686 69666968 -72604476 + AluJo SINE Alu 29 307 -5 842 292 98 49 chr9 69667166 69667234 -72604210 - L2 LINE L2 -86 3227 3164 2306 106 0 6 chr9 69667234 69667546 -72603898 + AluSx SINE Alu 1 310 -2 842 292 98 49 chr9 69667546 69667909 -72603535 - L2 LINE L2 -149 3164 2779 1792 180 55 14 chr9 69668199 69668544 -72602900 - MLT1A1 LTR MaLR -3 362 4 2201 124 0 3 chr9 69669259 69669558 -72601886 - AluSx SINE Alu -14 298 1 531 0 0 0 chr9 69670544 69670603 -72600841 + (GAAA)n Simple_repeat Simple_repeat 1 59 0 2255 186 34 22 chr9 69670607 69671252 -72600192 + L1M4 LINE L1 5143 5797 -377 554 122 12 0 chr9 69671252 69671334 -72600110 - L1M4 LINE L1 -519 5655 5573 2334 95 0 3 chr9 69671467 69671771 -72599673 - AluSq SINE Alu -4 309 7 393 316 53 53 chr9 69671788 69671959 -72599485 - L2 LINE L2 -5 3267 3097 2101 117 3 25 chr9 69672091 69672408 -72599036 - AluSq SINE Alu -2 311 2 315 300 75 44 chr9 69672488 69672648 -72598796 + MIR3 SINE MIR 22 186 -22 659 332 64 27 chr9 69673718 69674093 -72597351 - MLT1K LTR MaLR -94 521 103 21 0 0 0 chr9 69674606 69674627 -72596817 + AT_rich Low_complexity Low_complexity 1 21 0 2410 87 6 0 chr9 69674821 69675132 -72596312 + AluSp SINE Alu 1 313 0 566 87 0 0 chr9 69675287 69675356 -72596088 - AluJb SINE Alu -182 130 62 449 329 146 50 chr9 69675436 69676142 -72595302 + L3 LINE CR1 230 1003 -574 868 221 20 79 chr9 69676558 69676752 -72594692 + MIR SINE MIR 14 192 -70 2191 109 3 0 chr9 69676752 69677066 -72594378 + AluSp SINE Alu 1 315 0 868 221 20 79 chr9 69677066 69677124 -72594320 + MIR SINE MIR 192 252 -10 197 343 46 28 chr9 69677412 69677520 -72593924 + L2 LINE L2 3127 3236 -36 203 270 67 11 chr9 69681001 69681090 -72590354 - MIR SINE MIR -64 144 51 314 340 60 16 chr9 69681109 69681294 -72590150 + MIR SINE MIR 20 212 -50 1630 262 53 6 chr9 69681498 69681968 -72589476 + LTR33 LTR ERVL 20 511 -10 211 125 0 0 chr9 69681984 69682016 -72589428 - MIR SINE MIR -108 154 123 197 286 0 43 chr9 69682509 69682579 -72588865 - MIR3 SINE MIR -5 203 137 687 200 0 9 chr9 69682680 69682795 -72588649 - FLAM_A SINE Alu -16 117 4 283 329 0 0 chr9 69682898 69682974 -72588470 - MIR3 SINE MIR -46 162 87 1041 271 46 27 chr9 69682990 69683319 -72588125 - MLT1I LTR MaLR -8 401 67 2142 113 0 0 chr9 69683379 69683662 -72587782 - AluSx SINE Alu -8 304 22 279 0 0 0 chr9 69684240 69684271 -72587173 + (TG)n Simple_repeat Simple_repeat 2 32 0 688 312 5 18 chr9 69684290 69684511 -72586933 + MIR SINE MIR 2 219 -43 485 329 74 16 chr9 69684573 69684816 -72586628 + MIR SINE MIR 3 259 -3 189 300 106 81 chr9 69684865 69685025 -72586419 - L2 LINE L2 -95 3177 3014 227 208 125 14 chr9 69686371 69686443 -72585001 + MLT1K LTR MaLR 509 588 0 3258 144 12 8 chr9 69686582 69687097 -72584347 + L1MB2 LINE L1 5653 6169 -2 221 292 0 69 chr9 69687266 69687338 -72584106 - L2 LINE L2 -18 3254 3188 456 234 52 13 chr9 69687646 69687800 -72583644 - MER103 DNA DNA 0 166 7 1291 256 29 29 chr9 69688091 69688439 -72583005 - LTR16C LTR ERVL -15 476 129 242 257 0 81 chr9 69689065 69689139 -72582305 - L2 LINE L2 0 3313 3246 563 265 131 57 chr9 69689152 69689376 -72582068 + MIR SINE MIR 3 236 -26 196 231 0 0 chr9 69689756 69689795 -72581649 - L2 LINE L2 0 3272 3234 185 397 0 0 chr9 69689818 69689891 -72581553 - L2 LINE L2 -2 3311 3239 3082 129 26 2 chr9 69689892 69690357 -72581087 + L1PB3 LINE L1 5679 6154 0 679 328 112 26 chr9 69691897 69692392 -72579052 + L2 LINE L2 2716 3269 -3 201 323 0 0 chr9 69692568 69692633 -72578811 - MIR SINE MIR -116 146 82 397 311 115 16 chr9 69692830 69693013 -72578431 + MIR3 SINE MIR 1 201 -7 2362 161 6 8 chr9 69693787 69694153 -72577291 + MLT1A1 LTR MaLR 1 365 0 2504 183 21 7 chr9 69694391 69694811 -72576633 + MSTB LTR MaLR 1 426 0 431 273 91 8 chr9 69695150 69695282 -72576162 - MIR3 SINE MIR -2 206 64 212 306 54 54 chr9 69695286 69695397 -72576047 - MIR3 SINE MIR -95 113 3 202 256 0 0 chr9 69695458 69695497 -72575947 + L3 LINE CR1 1537 1575 -2 192 77 0 0 chr9 69695568 69695594 -72575850 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr9 69696113 69696136 -72575308 + AT_rich Low_complexity Low_complexity 1 23 0 302 277 48 0 chr9 69696437 69696520 -72574924 - MIR3 SINE MIR -4 204 118 425 281 99 93 chr9 69697116 69697461 -72573983 - L2 LINE L2 -8 3264 2918 1167 232 121 24 chr9 69697598 69697930 -72573514 + LTR16A LTR ERVL 52 415 -35 274 258 124 0 chr9 69698307 69698396 -72573048 + MER5A DNA MER1_type 7 106 -83 411 278 26 33 chr9 69699162 69699313 -72572131 - L1ME2 LINE L1 -103 6061 5912 760 276 48 14 chr9 69699328 69699680 -72571764 - L1MEc LINE L1 -4768 1628 1265 534 240 32 0 chr9 69699797 69699922 -72571522 + MER94 DNA DNA 1 129 -5 5456 166 36 20 chr9 69700115 69701217 -72570227 - L1MC2 LINE L1 0 6344 5225 1310 289 40 24 chr9 69701339 69701965 -72569479 - L1MEc LINE L1 -5135 1261 626 674 267 47 73 chr9 69702076 69702376 -72569068 - L1MEc LINE L1 -6066 330 39 3469 224 46 42 chr9 69702472 69703149 -72568295 + Zaphod DNA AcHobo 14 698 -3333 2029 101 0 0 chr9 69703149 69703406 -72568038 - AluSq SINE Alu -17 296 40 3469 224 46 42 chr9 69703406 69703786 -72567658 + Zaphod DNA AcHobo 698 1075 -2956 620 261 6 12 chr9 69703791 69703952 -72567492 + Zaphod DNA AcHobo 3872 4031 0 572 218 61 42 chr9 69704996 69705161 -72566283 + MER5B DNA MER1_type 1 168 -10 838 148 8 0 chr9 69705287 69705415 -72566029 + FLAM_C SINE Alu 3 131 -2 680 20 41 0 chr9 69706321 69706419 -72565025 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 326 224 169 8 chr9 69706839 69706956 -72564488 - MIR3 SINE MIR -15 193 56 8993 98 16 18 chr9 69707484 69708599 -72562845 + HSMAR2 DNA Mariner 1 1114 -188 2228 115 0 0 chr9 69708599 69708887 -72562557 + AluSg SINE Alu 1 288 -22 8993 98 16 18 chr9 69708887 69709075 -72562369 + HSMAR2 DNA Mariner 1114 1301 -1 225 83 0 0 chr9 69709321 69709357 -72562087 + (T)n Simple_repeat Simple_repeat 1 36 0 337 338 50 25 chr9 69709374 69709534 -72561910 + MIR3 SINE MIR 31 194 -14 289 273 55 62 chr9 69710378 69710506 -72560938 - MIR3 SINE MIR -49 159 33 233 111 28 0 chr9 69710756 69710792 -72560652 - Charlie8 DNA MER1_type -1003 1414 1378 2034 154 0 0 chr9 69711226 69711525 -72559919 - AluSx SINE Alu -13 299 1 2399 85 16 0 chr9 69712422 69712600 -72558844 - AluY SINE Alu 0 311 124 189 0 0 0 chr9 69712600 69712621 -72558823 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2399 85 16 0 chr9 69712621 69712748 -72558696 - AluY SINE Alu -187 124 1 187 315 19 0 chr9 69712753 69712807 -72558637 + MIR SINE MIR 86 140 -68 2025 124 3 17 chr9 69712871 69713161 -72558283 - AluSx SINE Alu -26 286 1 298 231 189 35 chr9 69713435 69713578 -72557866 + MIR SINE MIR 47 211 -51 1367 209 99 43 chr9 69713644 69714116 -72557328 + MER39 LTR ERV1 1 707 0 270 81 0 0 chr9 69714332 69714369 -72557075 + (TG)n Simple_repeat Simple_repeat 2 38 0 2166 118 0 3 chr9 69715329 69715625 -72555819 - AluSq SINE Alu -17 296 2 555 101 0 0 chr9 69715661 69715740 -72555704 + MADE1 DNA Mariner 2 80 0 547 215 16 0 chr9 69716019 69716140 -72555304 - MIR SINE MIR -31 231 109 4573 168 26 7 chr9 69717453 69718393 -72553051 - L1PBa LINE L1 -4666 2197 1096 1126 190 68 5 chr9 69718400 69718621 -72552823 - L1PBa LINE L1 -5912 951 717 592 238 188 15 chr9 69718996 69719198 -72552246 - MIR SINE MIR -8 254 18 231 333 0 0 chr9 69720669 69720735 -72550709 - MIR SINE MIR -111 151 86 2180 108 7 0 chr9 69720947 69721242 -72550202 - AluSx SINE Alu 0 312 16 3475 171 55 21 chr9 69721611 69721998 -72549446 - L1MB4 LINE L1 0 6180 5808 2802 174 37 18 chr9 69721998 69722508 -72548936 - MLT2B1 LTR ERVL 0 520 1 3475 171 55 21 chr9 69722508 69722620 -72548824 - L1MB4 LINE L1 -372 5808 5701 2408 123 47 3 chr9 69722620 69722979 -72548465 - THE1C LTR MaLR 0 375 1 10008 111 37 45 chr9 69722979 69724572 -72546872 - THE1C-int LTR MaLR 0 1580 1 2768 97 11 3 chr9 69724572 69724944 -72546500 - THE1C LTR MaLR 0 375 1 3475 171 55 21 chr9 69724944 69725154 -72546290 - L1MB4 LINE L1 -478 5702 5444 445 353 13 0 chr9 69725220 69725373 -72546071 + LTR67 LTR ERVL 36 190 -367 2410 107 0 0 chr9 69726038 69726346 -72545098 - AluSx SINE Alu -4 308 1 1256 169 32 28 chr9 69727329 69727578 -72543866 - THE1C LTR MaLR -1 374 125 4009 137 21 52 chr9 69727580 69728353 -72543091 - L1 LINE L1 -834 5312 4564 309 224 26 0 chr9 69728353 69728429 -72543015 - HAL1 LINE L1 -304 2203 2126 2350 228 87 147 chr9 69728433 69729000 -72542444 - HAL1 LINE L1 -1028 1479 880 2049 146 10 0 chr9 69729000 69729308 -72542136 - AluSx SINE Alu -1 311 1 2350 228 87 147 chr9 69729308 69730309 -72541135 - HAL1 LINE L1 -1627 880 4 2021 120 7 0 chr9 69731234 69731510 -72539934 + AluSx SINE Alu 5 282 -30 195 42 0 0 chr9 69731516 69731540 -72539904 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 974 246 16 4 chr9 69731714 69731958 -72539486 - MIR SINE MIR -2 260 14 241 306 41 31 chr9 69732071 69732169 -72539275 - MER5B DNA MER1_type 0 178 80 1432 204 116 9 chr9 69733765 69734093 -72537351 + MLT1A1 LTR MaLR 3 365 0 852 141 87 49 chr9 69734177 69734361 -72537083 - MLT1C LTR MaLR 0 467 277 217 254 18 0 chr9 69734510 69734565 -72536879 + MIR SINE MIR 85 140 -68 1991 75 38 72 chr9 69735404 69735723 -72535721 + AluY SINE Alu 1 308 -3 1098 100 0 0 chr9 69736297 69736567 -72534877 + (GAATG)n Satellite Satellite 1 270 0 916 99 6 6 chr9 69736592 69736753 -72534691 + (GAATG)n Satellite Satellite 5 165 0 235 277 0 0 chr9 69736753 69736818 -72534626 + Charlie8 DNA MER1_type 90 154 -2263 392 207 46 0 chr9 69737039 69737126 -72534318 + L2 LINE L2 3172 3262 -10 625 242 24 12 chr9 69737654 69737819 -72533625 + MIR SINE MIR 48 214 -48 1153 220 210 16 chr9 69737841 69738264 -72533180 - MLT1D LTR MaLR 0 505 1 1177 299 59 0 chr9 69738555 69738959 -72532485 + LTR16A LTR ERVL 18 445 -5 452 294 190 9 chr9 69739414 69739625 -72531819 + MIR SINE MIR 12 260 -2 2080 287 78 19 chr9 69739816 69740012 -72531432 - L2 LINE L2 -278 3035 2852 2089 133 27 0 chr9 69740012 69740313 -72531131 + AluSc SINE Alu 1 309 0 2080 287 78 19 chr9 69740313 69741098 -72530346 - L2 LINE L2 -461 2852 2008 517 217 163 24 chr9 69741144 69741310 -72530134 + MER5A DNA MER1_type 1 189 0 248 77 26 0 chr9 69741353 69741392 -72530052 + (GGA)n Simple_repeat Simple_repeat 3 42 0 245 325 110 7 chr9 69743778 69743932 -72527512 - MIR SINE MIR -24 238 69 957 92 123 0 chr9 69744227 69744390 -72527054 - MER5A DNA MER1_type -6 183 1 399 222 12 0 chr9 69744471 69744552 -72526892 - MER96 DNA MER1_type? -93 82 1 3770 57 4 0 chr9 69745299 69745777 -72525667 - L1PA8 LINE L1 -3 6169 5690 1967 124 0 72 chr9 69746377 69746708 -72524736 - AluSx SINE Alu -5 307 1 364 178 0 14 chr9 69748323 69748396 -72523048 + L2 LINE L2 3241 3312 -1 804 253 21 0 chr9 69748506 69748700 -72522744 + MIR SINE MIR 8 205 -57 572 14 28 0 chr9 69749987 69750059 -72521385 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 379 267 43 128 chr9 69750074 69750261 -72521183 - MER5B DNA MER1_type -1 177 7 281 278 20 119 chr9 69751495 69751646 -72519798 - L2 LINE L2 0 3272 3137 789 317 108 36 chr9 69751889 69752557 -72518887 - L2 LINE L2 -620 2694 1979 651 187 0 37 chr9 69753044 69753178 -72518266 + FLAM_C SINE Alu 1 129 -4 564 241 97 37 chr9 69753358 69753574 -72517870 - MIR SINE MIR -21 241 13 3258 135 23 0 chr9 69754781 69755298 -72516146 + MER1A DNA MER1_type 1 529 0 605 318 99 0 chr9 69756256 69756479 -72514965 - MIR SINE MIR -10 252 8 348 316 90 14 chr9 69756558 69756770 -72514674 - MIR SINE MIR 0 262 35 242 244 178 11 chr9 69757413 69757503 -72513941 - MIR SINE MIR -70 192 88 334 308 128 19 chr9 69758245 69758401 -72513043 + L2 LINE L2 3100 3272 0 243 61 0 0 chr9 69758830 69758863 -72512581 + (GA)n Simple_repeat Simple_repeat 2 34 0 337 329 84 19 chr9 69759334 69759489 -72511955 - MIR SINE MIR -75 187 23 862 132 23 17 chr9 69759673 69759847 -72511597 + MER96B DNA MER1_type? 1 175 -242 477 315 125 30 chr9 69760973 69761109 -72510335 - L2 LINE L2 -1 3312 3190 1924 125 11 0 chr9 69761109 69761381 -72510063 + AluSx SINE Alu 25 299 -13 477 315 125 30 chr9 69761381 69761539 -72509905 - L2 LINE L2 -123 3190 2990 256 330 68 11 chr9 69761550 69761638 -72509806 + L2 LINE L2 3180 3272 0 441 282 75 52 chr9 69761815 69762028 -72509416 - MIR SINE MIR -25 237 20 26 64 0 0 chr9 69762217 69762264 -72509180 + AT_rich Low_complexity Low_complexity 1 47 0 1599 119 36 0 chr9 69762286 69762538 -72508906 - L1PB1 LINE L1 -3 6148 5888 195 125 0 0 chr9 69762678 69762718 -72508726 + (TG)n Simple_repeat Simple_repeat 2 41 0 402 260 24 16 chr9 69762829 69762952 -72508492 - MIR3 SINE MIR -8 200 77 192 77 0 0 chr9 69763020 69763046 -72508398 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1025 282 121 15 chr9 69764036 69764692 -72506752 - L2 LINE L2 0 3313 2571 230 303 0 5 chr9 69764692 69764807 -72506637 + MER91A DNA MER1_type 1 164 -32 305 279 0 13 chr9 69764896 69764975 -72506469 - L2 LINE L2 -738 2576 2499 1118 298 80 5 chr9 69765050 69765463 -72505981 - LTR16A LTR ERVL 0 450 7 210 324 63 45 chr9 69766037 69766148 -72505296 + MIR SINE MIR 79 191 -71 2138 94 19 39 chr9 69766545 69766854 -72504590 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr9 69767415 69767443 -72504001 + AT_rich Low_complexity Low_complexity 1 28 0 187 311 0 0 chr9 69768671 69768716 -72502728 + L2 LINE L2 3225 3269 -3 22 0 0 0 chr9 69769873 69769895 -72501549 + AT_rich Low_complexity Low_complexity 1 22 0 521 195 110 65 chr9 69770644 69770798 -72500646 - MIR SINE MIR -67 195 35 2174 109 23 0 chr9 69770945 69771248 -72500196 - AluSx SINE Alu -2 310 1 232 265 15 15 chr9 69772059 69772127 -72499317 - Charlie4 DNA MER1_type -6 1955 1888 261 300 50 17 chr9 69772240 69772360 -72499084 - MLT1J LTR MaLR -150 361 238 346 195 26 0 chr9 69772466 69772543 -72498901 + MER45C DNA AcHobo 94 172 -781 1303 279 65 2 chr9 69772611 69773012 -72498432 + MER45C DNA AcHobo 528 953 0 597 203 29 14 chr9 69773029 69773167 -72498277 - MLT1J LTR MaLR -371 140 1 533 301 97 5 chr9 69773177 69773373 -72498071 - MIR SINE MIR -36 226 13 345 375 7 13 chr9 69773464 69773616 -72497828 + MER5A DNA MER1_type 18 168 -21 831 312 55 13 chr9 69773679 69774064 -72497380 + L1MC4a LINE L1 5501 5901 -1907 2017 156 0 0 chr9 69774256 69774551 -72496893 + AluSg SINE Alu 1 295 -15 890 216 5 19 chr9 69775487 69775695 -72495749 + MER3 DNA MER1_type 1 205 -4 1946 183 49 7 chr9 69776465 69776892 -72494552 - LTR56 LTR ERV1 0 445 1 245 253 84 0 chr9 69778528 69778623 -72492821 - L1ME LINE L1 -297 5824 5722 223 143 0 71 chr9 69779094 69779136 -72492308 + L2 LINE L2 3224 3262 -10 383 157 0 14 chr9 69780272 69780342 -72491102 + AluJo SINE Alu 66 134 -168 231 114 0 0 chr9 69781774 69781809 -72489635 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 478 195 11 0 chr9 69782453 69782540 -72488904 + L2 LINE L2 3225 3312 -1 26 0 0 0 chr9 69783921 69783947 -72487497 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr9 69784324 69784348 -72487096 + AT_rich Low_complexity Low_complexity 1 24 0 394 254 99 21 chr9 69785092 69785234 -72486210 - MIR3 SINE MIR -53 155 3 1456 262 60 44 chr9 69785300 69785869 -72485575 - MLT1K LTR MaLR 0 588 11 276 343 57 0 chr9 69786504 69786609 -72484835 + MIR3 SINE MIR 44 154 -54 249 231 15 0 chr9 69786640 69786705 -72484739 - MER113 DNA MER1_type? -1 520 455 336 233 39 23 chr9 69786814 69786943 -72484501 - MER113 DNA MER1_type? -386 135 5 554 328 42 12 chr9 69787024 69787265 -72484179 - MIR SINE MIR -14 248 1 249 321 37 18 chr9 69787851 69787960 -72483484 + MIR SINE MIR 151 261 -1 1309 286 55 39 chr9 69788137 69788219 -72483225 + L1MC4a LINE L1 5255 5334 -2474 216 0 0 0 chr9 69788219 69788243 -72483201 + (CA)n Simple_repeat Simple_repeat 1 24 0 1309 286 55 39 chr9 69788243 69788284 -72483160 + L1MC4a LINE L1 5334 5373 -2435 1882 164 0 35 chr9 69788284 69788595 -72482849 + AluJo SINE Alu 3 302 -10 1309 286 55 39 chr9 69788595 69789210 -72482234 + L1MC4a LINE L1 5373 6006 -1802 484 122 0 11 chr9 69789575 69789665 -72481779 - MER53 DNA DNA -18 171 83 236 281 0 37 chr9 69789736 69789818 -72481626 + MIR SINE MIR 109 187 -75 302 310 103 9 chr9 69790142 69790258 -72481186 - L2 LINE L2 -1 3312 3186 210 253 23 46 chr9 69790303 69790390 -72481054 - MER5B DNA MER1_type -1 177 93 * 270 289 11 11 chr9 69790328 69790418 -72481026 + MER5B DNA MER1_type 89 178 0 210 270 0 0 chr9 69791123 69791197 -72480247 + (TA)n Simple_repeat Simple_repeat 2 75 0 2132 126 0 23 chr9 69791511 69791820 -72479624 - AluSx SINE Alu -10 302 1 303 154 36 36 chr9 69792998 69793053 -72478391 - MER91 DNA MER1_type 0 140 6 847 305 134 40 chr9 69793087 69793821 -72477623 - L2 LINE L2 -250 3022 2196 299 233 82 38 chr9 69793825 69793984 -72477460 - MLT1J LTR MaLR -4 507 342 21 0 0 0 chr9 69794089 69794110 -72477334 + AT_rich Low_complexity Low_complexity 1 21 0 1735 172 24 3 chr9 69794111 69794401 -72477043 - AluJb SINE Alu -11 301 6 275 258 0 0 chr9 69794405 69794467 -72476977 + MER81 DNA DNA 53 114 0 460 252 63 80 chr9 69794469 69794771 -72476673 - MLT1J LTR MaLR -200 311 15 316 300 163 21 chr9 69796839 69797029 -72474415 + MIR SINE MIR 46 262 0 23 33 0 0 chr9 69797085 69797115 -72474329 + AT_rich Low_complexity Low_complexity 1 30 0 2186 96 0 0 chr9 69797781 69798061 -72473383 + AluSx SINE Alu 1 280 -32 291 54 0 0 chr9 69798066 69798103 -72473341 + (GA)n Simple_repeat Simple_repeat 1 37 0 595 293 103 4 chr9 69798226 69798458 -72472986 - MIR SINE MIR -7 255 1 527 160 90 0 chr9 69799060 69799160 -72472284 + Tigger3(Golem) DNA MER2_type 2 110 -2919 * 3760 135 44 15 chr9 69799149 69799880 -72471564 + Tigger3(Golem) DNA MER2_type 2277 3028 -1 967 175 58 15 chr9 69801112 69801318 -72470126 + L1MB7 LINE L1 5 219 -6323 5036 161 29 19 chr9 69801320 69801780 -72469664 + L1MB7 LINE L1 5135 5589 -1093 2047 114 3 13 chr9 69801780 69802079 -72469365 + AluSx SINE Alu 1 296 -16 5036 161 29 19 chr9 69802079 69803032 -72468412 + L1MB7 LINE L1 5589 6662 -20 584 188 39 23 chr9 69803330 69803458 -72467986 + MER117 DNA MER1_type 1 130 -67 549 233 111 41 chr9 69804086 69804258 -72467186 + MER5A DNA MER1_type 1 184 -5 184 219 0 0 chr9 69804665 69804697 -72466747 + MIR SINE MIR 195 226 -36 276 139 30 40 chr9 69805406 69805507 -72465937 + GA-rich Low_complexity Low_complexity 3 102 0 537 245 66 13 chr9 69806001 69806152 -72465292 - Charlie8 DNA MER1_type -2137 280 122 256 247 55 27 chr9 69809271 69809344 -72462100 + MIR SINE MIR 109 183 -79 602 206 0 24 chr9 69809521 69809647 -72461797 + MIR SINE MIR 109 231 -31 922 269 150 38 chr9 69809798 69810244 -72461200 - LTR33 LTR ERVL -3 518 23 489 291 122 11 chr9 69810688 69810877 -72460567 - MIR SINE MIR 0 262 53 983 232 86 61 chr9 69812284 69812611 -72458833 - MER102b DNA MER1_type -3 338 4 198 364 41 32 chr9 69813089 69813309 -72458135 - L2 LINE L2 -453 2861 2640 2068 100 0 4 chr9 69813442 69813711 -72457733 - AluSx SINE Alu -13 299 32 396 353 41 6 chr9 69814493 69814663 -72456781 + MIR3 SINE MIR 19 194 -14 218 217 33 17 chr9 69814956 69815016 -72456428 + CT-rich Low_complexity Low_complexity 5 65 0 3036 65 46 0 chr9 69815331 69815703 -72455741 + L1PA7 LINE L1 5763 6151 -3 471 202 0 76 chr9 69815833 69815952 -72455492 + MER103 DNA DNA 8 117 -49 387 0 0 0 chr9 69816366 69816409 -72455035 + (CA)n Simple_repeat Simple_repeat 2 44 0 570 159 121 134 chr9 69820649 69820881 -72450563 - ORSL DNA AcHobo -20 255 27 347 309 16 0 chr9 69820984 69821110 -72450334 - LTR16B LTR ERVL -303 161 34 218 262 164 8 chr9 69821361 69821483 -72449961 + L3 LINE CR1 1437 1577 0 271 279 38 0 chr9 69821521 69821600 -72449844 + Charlie8 DNA MER1_type 1 82 -2335 2470 166 33 11 chr9 69821611 69822063 -72449381 + MLT1C LTR MaLR 1 462 -5 383 259 54 41 chr9 69822213 69822360 -72449084 - Charlie8 DNA MER1_type -2194 223 75 180 364 0 0 chr9 69822623 69822678 -72448766 - L2 LINE L2 -7 3265 3211 1921 160 3 16 chr9 69822759 69823072 -72448372 - AluJo SINE Alu -3 309 1 650 296 36 1 chr9 69823298 69823531 -72447913 - MIR SINE MIR -15 247 9 329 250 167 0 chr9 69823864 69823972 -72447472 + L1ME3A LINE L1 6039 6164 -6 316 185 15 111 chr9 69824012 69824147 -72447297 - L1MC5 LINE L1 -81 7880 7759 224 245 11 96 chr9 69825252 69825346 -72446098 - MIR SINE MIR -112 150 65 335 294 105 28 chr9 69826540 69826683 -72444761 - MIR3 SINE MIR -3 205 52 2024 150 0 0 chr9 69826731 69827018 -72444426 - AluJb SINE Alu -25 287 1 628 294 71 33 chr9 69827037 69827176 -72444268 - MIR SINE MIR -10 252 101 2371 108 50 44 chr9 69827176 69827538 -72443906 + THE1B LTR MaLR 1 364 0 628 294 71 33 chr9 69827538 69827609 -72443835 - MIR SINE MIR -161 101 34 784 269 25 81 chr9 69827628 69827825 -72443619 + MER102b DNA MER1_type 2 172 -1256 2471 172 46 30 chr9 69827825 69828070 -72443374 - MLT1C LTR MaLR -1 466 209 342 0 0 0 chr9 69828070 69828108 -72443336 + (TG)n Simple_repeat Simple_repeat 1 38 0 2471 172 46 30 chr9 69828108 69828321 -72443123 - MLT1C LTR MaLR -258 209 1 784 269 25 81 chr9 69828321 69828483 -72442961 + MER102b DNA MER1_type 172 341 0 299 23 47 0 chr9 69828837 69828880 -72442564 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1813 189 50 36 chr9 69829028 69829388 -72442056 - MLT1A1 LTR MaLR 0 365 1 1456 146 78 57 chr9 69830594 69830875 -72440569 - AluJo SINE Alu -14 298 12 599 280 53 11 chr9 69831671 69831860 -72439584 + MIR SINE MIR 49 245 -17 2777 145 22 34 chr9 69833688 69833931 -72437513 - L1MC1 LINE L1 0 6333 6089 1875 171 0 0 chr9 69833931 69834236 -72437208 + AluJb SINE Alu 1 305 -7 2777 145 22 34 chr9 69834236 69834580 -72436864 - L1MC1 LINE L1 -244 6089 5676 1263 254 92 21 chr9 69835235 69835712 -72435732 - L1MD3 LINE L1 -10 8029 7453 4572 158 16 5 chr9 69835973 69836763 -72434681 - L1PB4 LINE L1 -3 6153 5355 6794 16 3 1 chr9 69837188 69837922 -72433522 - L1PA3 LINE L1 -5 6150 5416 1156 178 46 39 chr9 69838630 69838889 -72432555 + L1MB5 LINE L1 5914 6174 0 547 227 51 57 chr9 69839120 69839296 -72432148 + MER69A DNA AcHobo 3 177 0 656 275 129 74 chr9 69839448 69839581 -72431863 - L2 LINE L2 -61 3252 3128 2153 182 28 88 chr9 69839581 69840157 -72431287 - MER34 LTR ERV1 0 542 2 656 275 129 74 chr9 69840157 69840562 -72430882 - L2 LINE L2 -185 3128 2677 1046 179 31 0 chr9 69840571 69840766 -72430678 - MLT1B LTR MaLR -2 388 188 198 167 0 0 chr9 69842201 69842237 -72429207 + CT-rich Low_complexity Low_complexity 1 36 0 180 97 0 0 chr9 69842737 69842768 -72428676 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 216 200 0 0 chr9 69843614 69843659 -72427785 + (CA)n Simple_repeat Simple_repeat 2 46 0 229 121 0 52 chr9 69843768 69843826 -72427618 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2046 130 0 7 chr9 69844713 69845013 -72426431 + AluSx SINE Alu 1 298 -14 1987 143 0 7 chr9 69845036 69845348 -72426096 + AluSx SINE Alu 1 310 0 263 231 137 27 chr9 69845437 69845562 -72425882 - HAL1b LINE L1 -193 2314 788 241 265 0 99 chr9 69845623 69845785 -72425659 - HAL1b LINE L1 -439 909 764 283 308 0 0 chr9 69845919 69845997 -72425447 - MER20 DNA MER1_type -141 78 1 331 303 218 5 chr9 69846172 69846360 -72425084 + L2 LINE L2 2839 3066 -247 425 278 71 0 chr9 69846426 69846552 -72424892 + MIR SINE MIR 1 135 -127 227 286 0 0 chr9 69846562 69846618 -72424826 + L2 LINE L2 3214 3269 -3 197 187 88 176 chr9 69846637 69846674 -72424770 + MER5B DNA MER1_type 1 40 -138 1869 113 22 72 chr9 69846674 69846809 -72424635 + AluSx SINE Alu 1 141 -171 2638 44 0 0 chr9 69846809 69847107 -72424337 + AluY SINE Alu 1 298 -13 1869 113 22 72 chr9 69847107 69847291 -72424153 + AluSx SINE Alu 141 304 -8 197 187 88 176 chr9 69847291 69847344 -72424100 + MER5B DNA MER1_type 40 83 -95 1480 265 61 10 chr9 69847345 69847741 -72423703 - LTR16A LTR ERVL -20 430 15 364 273 40 0 chr9 69847742 69847841 -72423603 + MER5B DNA MER1_type 76 178 0 801 287 64 71 chr9 69848704 69849547 -72421897 + L2 LINE L2 2464 3309 -4 183 250 0 0 chr9 69849787 69849823 -72421621 - MIR SINE MIR -71 191 156 478 275 77 19 chr9 69850426 69850633 -72420811 - MIR SINE MIR -35 227 9 283 255 33 85 chr9 69850807 69850960 -72420484 + MIR SINE MIR 91 235 -27 24 32 0 0 chr9 69851846 69851877 -72419567 + AT_rich Low_complexity Low_complexity 1 31 0 346 279 0 59 chr9 69851959 69852095 -72419349 - MER103 DNA DNA 0 166 39 236 255 21 117 chr9 69852135 69852323 -72419121 + L2 LINE L2 3118 3287 -26 1699 120 74 14 chr9 69852589 69852873 -72418571 - AluJo SINE Alu -11 301 1 232 340 103 50 chr9 69853213 69853793 -72417651 + L2 LINE L2 1230 1840 -1474 334 311 46 62 chr9 69855765 69856032 -72415412 + L1ME LINE L1 5164 5426 -695 1521 178 29 11 chr9 69856032 69856313 -72415131 - AluJo SINE Alu -26 286 1 334 311 46 62 chr9 69856313 69856379 -72415065 + L1ME LINE L1 5426 5491 -630 183 186 0 0 chr9 69856479 69856522 -72414922 + (TA)n Simple_repeat Simple_repeat 2 44 0 232 266 9 18 chr9 69856538 69856647 -72414797 + (TA)n Simple_repeat Simple_repeat 2 109 0 215 100 0 25 chr9 69856709 69856723 -72414721 + (TA)n Simple_repeat Simple_repeat 2 15 -25 1952 185 9 3 chr9 69856723 69857069 -72414375 - MER7A DNA MER2_type 0 346 1 215 100 0 25 chr9 69857069 69857094 -72414350 + (TA)n Simple_repeat Simple_repeat 15 40 0 288 0 0 0 chr9 69857109 69857141 -72414303 + (CA)n Simple_repeat Simple_repeat 2 33 0 661 287 29 22 chr9 69857161 69857436 -72414008 + L1ME LINE L1 5498 5774 -347 2007 151 0 0 chr9 69857991 69858296 -72413148 + AluSx SINE Alu 1 305 -7 1747 170 31 3 chr9 69860548 69860842 -72410602 - AluJb SINE Alu -8 304 3 2085 133 7 0 chr9 69861279 69861588 -72409856 - AluSx SINE Alu -1 311 1 2183 123 7 0 chr9 69861736 69862036 -72409408 + AluJb SINE Alu 3 304 -8 188 238 24 0 chr9 69862048 69862090 -72409354 + L2 LINE L2 3210 3252 -20 1184 155 63 0 chr9 69862134 69862340 -72409104 + MER20 DNA MER1_type 1 219 0 1540 167 38 28 chr9 69862701 69862988 -72408456 - AluJo SINE Alu -9 303 14 56 0 0 0 chr9 69862988 69863044 -72408400 + AT_rich Low_complexity Low_complexity 1 56 0 755 191 124 11 chr9 69863750 69863928 -72407516 + MER3 DNA MER1_type 6 203 -6 2113 121 3 10 chr9 69864019 69864325 -72407119 + AluSq SINE Alu 1 304 -9 301 326 0 0 chr9 69864328 69864417 -72407027 - L1MC4 LINE L1 -1339 6703 6615 2273 98 0 0 chr9 69866271 69866558 -72404886 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr9 69867266 69867287 -72404157 + AT_rich Low_complexity Low_complexity 1 21 0 515 226 65 0 chr9 69867947 69868071 -72403373 - MIR SINE MIR -53 209 78 548 238 7 34 chr9 69869122 69869269 -72402175 + MER97a DNA MER1_type? 29 171 -723 1684 170 27 27 chr9 69869278 69869572 -72401872 + AluJb SINE Alu 1 294 -18 1521 105 50 9 chr9 69869796 69870015 -72401429 + MER30 DNA MER1_type 3 230 0 633 269 81 70 chr9 69870975 69871332 -72400112 - MLT1K LTR MaLR 0 588 228 264 100 0 0 chr9 69871430 69871470 -72399974 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 352 234 37 41 chr9 69871873 69872012 -72399432 + MIR SINE MIR 27 164 -63 525 288 191 15 chr9 69872027 69872247 -72399197 + MIR SINE MIR 5 262 0 1670 235 21 92 chr9 69872252 69872787 -72398657 - L2 LINE L2 0 3313 2867 2069 123 3 7 chr9 69872787 69873087 -72398357 - AluSx SINE Alu -13 299 1 1670 235 21 92 chr9 69873087 69873456 -72397988 - L2 LINE L2 -446 2867 2473 1660 119 35 8 chr9 69873484 69873744 -72397700 + MER44D DNA MER2_type 284 605 0 1935 178 35 11 chr9 69873744 69874115 -72397329 - MLT1B LTR MaLR -5 385 6 2843 198 48 14 chr9 69874926 69875601 -72395843 - Tigger7 DNA MER2_type 0 2587 2 345 255 140 75 chr9 69875602 69875802 -72395642 - MIR SINE MIR -16 246 34 1743 202 75 11 chr9 69876215 69876587 -72394857 - MSTD LTR MaLR 0 396 1 2299 75 0 39 chr9 69877292 69877625 -72393819 + AluY SINE Alu 1 311 0 30238 116 36 32 chr9 69877935 69884068 -72387376 - L1PA8 LINE L1 -6 6166 12 974 279 38 41 chr9 69884382 69884692 -72386752 - L1ME LINE L1 -4686 1575 1265 2364 167 24 7 chr9 69884692 69885111 -72386333 - MSTB LTR MaLR 0 426 1 974 279 38 41 chr9 69885111 69885505 -72385939 - L1ME LINE L1 -4996 1265 839 1457 174 23 29 chr9 69885512 69886160 -72385284 - L1MB7 LINE L1 -20 6662 5935 6065 220 52 62 chr9 69886160 69886637 -72384807 - L1MB7 LINE L1 -3788 2856 2376 1280 85 62 0 chr9 69886637 69886813 -72384631 - U2 snRNA snRNA -1 187 1 6065 220 52 62 chr9 69886813 69886831 -72384613 - L1MB7 LINE L1 -4268 2376 2359 864 104 15 30 chr9 69886831 69886966 -72384478 - FLAM_C SINE Alu 0 133 1 6065 220 52 62 chr9 69886966 69889163 -72382281 - L1MB7 LINE L1 -4285 2359 151 271 178 0 0 chr9 69889163 69889208 -72382236 - MER31A LTR ERV1 -437 48 4 6065 220 52 62 chr9 69889208 69889344 -72382100 - L1MB7 LINE L1 -6493 151 15 22 0 0 0 chr9 69890613 69890635 -72380809 + AT_rich Low_complexity Low_complexity 1 22 0 2873 139 21 2 chr9 69890734 69891210 -72380234 - MER31A LTR ERV1 0 485 1 440 229 0 29 chr9 69892221 69892326 -72379118 + MIR SINE MIR 61 162 -100 1295 233 38 55 chr9 69892326 69892691 -72378753 + MLT1A1 LTR MaLR 1 359 -6 353 206 106 28 chr9 69893119 69893260 -72378184 - MER113 DNA MER1_type? -368 153 2 13843 135 48 16 chr9 69893504 69893976 -72377468 + Tigger7 DNA MER2_type 1 456 -2031 2027 159 22 8 chr9 69893976 69894335 -72377109 - THE1B LTR MaLR 0 364 1 13843 135 48 16 chr9 69894335 69895781 -72375663 + Tigger7 DNA MER2_type 456 2010 -477 216 0 0 0 chr9 69895781 69895805 -72375639 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 13843 135 48 16 chr9 69895805 69896217 -72375227 + Tigger7 DNA MER2_type 2010 2407 -80 198 0 0 0 chr9 69896222 69896244 -72375200 + (TA)n Simple_repeat Simple_repeat 1 22 0 233 98 59 0 chr9 69896260 69896311 -72375133 - Tigger7 DNA MER2_type -101 2390 2337 366 161 0 0 chr9 69896324 69896380 -72375064 + Tigger7 DNA MER2_type 2502 2557 -30 37078 33 11 1 chr9 69897118 69903143 -72368301 - L1PA2 LINE L1 0 6155 2 1005 118 65 24 chr9 69903225 69903394 -72368050 - L1MB3 LINE L1 -7 6176 6001 1287 183 87 37 chr9 69904194 69904516 -72366928 + MER44D DNA MER2_type 2 609 0 41076 72 6 3 chr9 69904691 69910824 -72360620 - L1PA5 LINE L1 0 6154 1 2999 274 83 18 chr9 69912061 69913388 -72358056 - L2 LINE L2 0 3313 1894 1823 168 5 67 chr9 69914285 69914671 -72356773 - MLT1A2 LTR MaLR -7 367 6 690 240 75 25 chr9 69914899 69915099 -72356345 + MER63A DNA MER1_type 1 210 0 286 343 81 17 chr9 69915878 69916050 -72355394 - MIR SINE MIR -59 203 21 766 155 34 130 chr9 69917937 69918144 -72353300 + MER5A DNA MER1_type 2 188 -1 271 270 30 80 chr9 69918147 69918247 -72353197 + MER5B DNA MER1_type 76 181 -8 265 225 381 29 chr9 69918618 69918791 -72352653 - MIR SINE MIR -27 235 2 1111 277 110 67 chr9 69919146 69919269 -72352175 - L2 LINE L2 -25 3288 3172 897 105 8 53 chr9 69919269 69919402 -72352042 + FLAM_C SINE Alu 1 127 -6 1111 277 110 67 chr9 69919402 69919418 -72352026 - L2 LINE L2 -141 3172 3158 225 0 0 0 chr9 69919418 69919443 -72352001 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 252 0 0 0 chr9 69919442 69919470 -72351974 + (GA)n Simple_repeat Simple_repeat 2 29 0 1111 277 110 67 chr9 69919443 69919502 -72351942 - L2 LINE L2 -155 3158 3103 1923 154 20 23 chr9 69919502 69919853 -72351591 + L1MA7 LINE L1 5940 6289 -2 1111 277 110 67 chr9 69919853 69920509 -72350935 - L2 LINE L2 -210 3103 2204 1934 162 20 0 chr9 69920918 69921221 -72350223 + AluJb SINE Alu 1 309 -3 2425 237 66 2 chr9 69921226 69921771 -72349673 - MER119 DNA MER1_type -3 580 1 3120 155 0 109 chr9 69922243 69922864 -72348580 - MLT2B3 LTR ERVL 0 554 2 25 51 0 0 chr9 69922950 69922989 -72348455 + AT_rich Low_complexity Low_complexity 1 39 0 265 200 46 46 chr9 69923397 69923462 -72347982 + MER69 DNA AcHobo 1 65 -2461 461 248 28 7 chr9 69923611 69923752 -72347692 + MER69 DNA AcHobo 2380 2523 -3 22 35 0 0 chr9 69923970 69923999 -72347445 + AT_rich Low_complexity Low_complexity 1 29 0 372 243 49 83 chr9 69925282 69925426 -72346018 + L2 LINE L2 3175 3313 0 269 333 93 13 chr9 69925434 69925584 -72345860 - MIR SINE MIR -88 174 13 24 32 0 0 chr9 69925741 69925772 -72345672 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr9 69926068 69926097 -72345347 + AT_rich Low_complexity Low_complexity 1 29 0 192 333 28 14 chr9 69926142 69926214 -72345230 + L2 LINE L2 3199 3271 -1 213 313 30 0 chr9 69927092 69927159 -72344285 - L2 LINE L2 -9 3304 3236 774 285 35 0 chr9 69927540 69927768 -72343676 + MIR SINE MIR 3 238 -24 2172 276 74 61 chr9 69928642 69929496 -72341948 + L1MEd LINE L1 56 970 -5340 1082 192 17 0 chr9 69929496 69929668 -72341776 - FAM SINE Alu 0 175 1 2172 276 74 61 chr9 69929668 69930222 -72341222 + L1MEd LINE L1 970 1515 -4795 11732 126 14 6 chr9 69930272 69932079 -72339365 + L1PA7 LINE L1 5 1808 -4643 42978 59 2 0 chr9 69932079 69938207 -72333237 + L1PA5 LINE L1 11 6145 -9 198 0 0 0 chr9 69938208 69938230 -72333214 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 207 0 0 0 chr9 69938229 69938252 -72333192 + (CA)n Simple_repeat Simple_repeat 2 24 0 28092 83 10 7 chr9 69938255 69942910 -72328534 + L1PA7 LINE L1 1804 6468 -1 264 250 29 0 chr9 69942982 69943050 -72328394 + L1MEd LINE L1 2931 3000 -3129 37776 94 8 10 chr9 69943074 69949229 -72322215 + L1PA6 LINE L1 11 6149 -5 391 276 98 0 chr9 69949554 69949677 -72321767 - LTR33 LTR ERVL -168 353 219 534 294 107 7 chr9 69949835 69950134 -72321310 - L1M4 LINE L1 -1967 4179 3851 28096 58 3 1 chr9 69950700 69956621 -72314823 + L1PA7 LINE L1 221 6152 -2 236 250 29 0 chr9 69956693 69956761 -72314683 + L1MEd LINE L1 2931 3000 -3129 35109 94 8 10 chr9 69956785 69962942 -72308502 + L1PA6 LINE L1 11 6149 -5 358 293 98 0 chr9 69963267 69963390 -72308054 - LTR33 LTR ERVL -168 353 219 482 266 43 0 chr9 69963663 69963847 -72307597 - L1M4 LINE L1 -2104 4042 3851 826 310 80 16 chr9 69964163 69964802 -72306642 - L1ME3A LINE L1 -206 5964 5285 306 183 0 17 chr9 69964889 69964949 -72306495 - MLT1D LTR MaLR -442 63 5 2209 129 3 0 chr9 69964998 69965307 -72306137 - AluSx SINE Alu -2 310 1 330 324 57 8 chr9 69965311 69965558 -72305886 - L1ME3A LINE L1 -1956 4190 3932 2804 113 14 23 chr9 69965570 69965888 -72305556 + L1PB3 LINE L1 5713 6027 -127 1784 153 4 8 chr9 69965888 69966156 -72305288 + AluJb SINE Alu 1 267 -45 2804 113 14 23 chr9 69966156 69966278 -72305166 + L1PB3 LINE L1 6027 6149 -5 204 138 77 15 chr9 69966278 69966343 -72305101 + (TA)n Simple_repeat Simple_repeat 1 69 0 361 245 148 52 chr9 69966437 69966592 -72304852 - L1ME3A LINE L1 -2217 3929 3760 1091 158 28 42 chr9 69966738 69966953 -72304491 + MER20 DNA MER1_type 1 212 -7 308 175 204 19 chr9 69966948 69967051 -72304393 + MER69 DNA AcHobo 2389 2510 -16 * 203 158 0 0 chr9 69967133 69967171 -72304273 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 213 178 0 0 chr9 69967189 69967234 -72304210 + GA-rich Low_complexity Low_complexity 2 46 0 700 148 0 9 chr9 69967289 69967404 -72304040 - AluJb SINE Alu -17 295 182 1197 194 0 9 chr9 69967458 69967680 -72303764 - AluJo SINE Alu -92 220 1 342 285 131 5 chr9 69967778 69967999 -72303445 + L1ME1 LINE L1 5612 5860 -306 24 100 0 0 chr9 69968006 69968086 -72303358 + AT_rich Low_complexity Low_complexity 1 80 0 2022 113 28 7 chr9 69968330 69968621 -72302823 - AluSx SINE Alu -15 297 1 28 61 0 0 chr9 69968771 69968820 -72302624 + AT_rich Low_complexity Low_complexity 1 49 0 1961 176 25 6 chr9 69970041 69970399 -72301045 + MLT1A1 LTR MaLR 1 365 0 347 252 55 97 chr9 69970864 69971245 -72300199 + L1ME4a LINE L1 5748 6112 -9 951 136 141 5 chr9 69971418 69971631 -72299813 + L1MA4A LINE L1 6055 6296 -7 533 261 126 11 chr9 69971666 69972014 -72299430 + L1M4 LINE L1 3071 3458 -2688 2404 163 107 36 chr9 69972459 69973019 -72298425 - LTR19C LTR ERV1 -3 776 177 680 259 149 79 chr9 69973304 69973407 -72298037 + L2 LINE L2 2609 2703 -610 2163 120 0 13 chr9 69973407 69973723 -72297721 + AluSx SINE Alu 1 312 0 680 259 149 79 chr9 69973723 69974089 -72297355 + L2 LINE L2 2703 3167 -146 2767 135 35 0 chr9 69974089 69974540 -72296904 - LTR24 LTR ERV1 0 467 1 680 259 149 79 chr9 69974540 69974638 -72296806 + L2 LINE L2 3167 3257 -56 1190 98 0 22 chr9 69976398 69976581 -72294863 - AluSq SINE Alu 0 313 135 1905 125 3 10 chr9 69976582 69976877 -72294567 - AluSx SINE Alu -19 293 1 210 293 280 0 chr9 69976946 69977103 -72294341 - MIR SINE MIR -14 248 48 1623 149 26 11 chr9 69977238 69977506 -72293938 - AluJb SINE Alu -37 275 4 660 301 256 23 chr9 69977537 69978478 -72292966 - L2 LINE L2 -341 2973 1814 433 287 183 50 chr9 69978917 69979234 -72292210 - L2 LINE L2 -809 2505 2147 531 254 8 0 chr9 69980128 69980254 -72291190 - FLAM_A SINE Alu -6 127 1 305 395 6 13 chr9 69981066 69981223 -72290221 + L1MEd LINE L1 3 158 -5961 1764 127 29 22 chr9 69981226 69981540 -72289904 - Tigger3(Golem) DNA MER2_type -1 3028 2713 2106 101 62 0 chr9 69981665 69981953 -72289491 + AluSq SINE Alu 1 306 -7 807 306 52 21 chr9 69981986 69982598 -72288846 + L1MEd LINE L1 2120 2750 -3379 23 0 0 0 chr9 69982638 69982661 -72288783 + AT_rich Low_complexity Low_complexity 1 23 0 401 254 136 17 chr9 69982778 69982896 -72288548 + MIR3 SINE MIR 66 197 -11 460 298 73 42 chr9 69983292 69983483 -72287961 - MIR SINE MIR -63 199 3 422 236 121 14 chr9 69983524 69983664 -72287780 + MIR SINE MIR 107 261 -1 363 253 0 11 chr9 69984053 69984140 -72287304 + MIR SINE MIR 4 89 -173 23 33 0 0 chr9 69984600 69984630 -72286814 + AT_rich Low_complexity Low_complexity 1 30 0 1957 125 0 4 chr9 69984633 69984914 -72286530 + AluSx SINE Alu 1 280 -32 21 0 0 0 chr9 69984951 69984972 -72286472 + AT_rich Low_complexity Low_complexity 1 21 0 278 328 112 0 chr9 69985277 69985402 -72286042 - MER117 DNA MER1_type -58 139 1 199 295 39 39 chr9 69985487 69985565 -72285879 - MIR3 SINE MIR -7 201 124 301 309 83 42 chr9 69985700 69985771 -72285673 + L1M4 LINE L1 4490 4557 -1589 1823 168 10 7 chr9 69985771 69986074 -72285370 + AluJb SINE Alu 1 304 -8 301 309 83 42 chr9 69986074 69986387 -72285057 + L1M4 LINE L1 4557 4890 -1256 1972 234 155 23 chr9 69986401 69987113 -72284331 - MER21B LTR ERV1 -1 905 19 2301 109 10 0 chr9 69987113 69987417 -72284027 - AluSq SINE Alu -6 307 1 1972 234 155 23 chr9 69987417 69987433 -72284011 - MER21B LTR ERV1 -887 19 6 1346 164 22 4 chr9 69987433 69987665 -72283779 - MER46A DNA MER2_type 0 236 1 26 74 0 0 chr9 69987708 69987762 -72283682 + AT_rich Low_complexity Low_complexity 1 54 0 870 303 186 17 chr9 69988018 69988731 -72282713 - L2 LINE L2 -95 3218 2362 248 169 51 0 chr9 69988775 69988834 -72282610 - MER104 DNA Tc2 -83 97 36 187 200 0 25 chr9 69988864 69988904 -72282540 - L2 LINE L2 -968 2346 2308 825 132 31 0 chr9 69988904 69989033 -72282411 + FLAM_C SINE Alu 1 133 -10 820 258 148 36 chr9 69989038 69989402 -72282042 - L2 LINE L2 -994 2320 1916 301 243 92 40 chr9 69989432 69989584 -72281860 - L1MEd LINE L1 -2294 3835 3676 353 205 107 45 chr9 69989882 69989994 -72281450 - L1MEd LINE L1 -2899 3230 3112 299 297 140 19 chr9 69989996 69990579 -72280865 - L1MEd LINE L1 -3062 3067 2379 2275 55 0 0 chr9 69990579 69990851 -72280593 - AluY SINE Alu -39 272 1 299 297 140 19 chr9 69990851 69990988 -72280456 - L1MEd LINE L1 -3750 2379 2260 27 29 0 0 chr9 69991378 69991412 -72280032 + AT_rich Low_complexity Low_complexity 1 34 0 237 284 78 12 chr9 69991455 69991652 -72279792 - L1MEd LINE L1 -4549 1580 1447 197 0 0 67 chr9 69991690 69991720 -72279724 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1314 150 73 30 chr9 69991738 69991971 -72279473 - AluJb SINE Alu -69 243 1 278 264 54 16 chr9 69992202 69992389 -72279055 - L1MEd LINE L1 -4910 1209 1095 236 277 147 55 chr9 69992639 69992986 -72278458 - L1MEd LINE L1 -5737 382 4 22 70 0 0 chr9 69993736 69993779 -72277665 + AT_rich Low_complexity Low_complexity 1 43 0 354 244 13 0 chr9 69995375 69995453 -72275991 - L2 LINE L2 0 3313 3235 1702 162 10 21 chr9 69995706 69995996 -72275448 + AluJo SINE Alu 3 289 -23 2598 74 0 0 chr9 69996005 69996314 -72275130 + AluSq SINE Alu 1 309 -4 611 54 151 0 chr9 69996320 69996413 -72275031 - L1PA15 LINE L1 -16 6149 6043 238 100 50 0 chr9 69997056 69997096 -72274348 - Alu SINE Alu -13 289 248 2177 88 10 17 chr9 69997514 69997810 -72273634 - AluSx SINE Alu -18 294 1 205 313 0 0 chr9 69998477 69998560 -72272884 + T-rich Low_complexity Low_complexity 1 83 0 1918 141 0 10 chr9 69999652 69999943 -72271501 + AluJb SINE Alu 1 288 -24 29 0 0 0 chr9 69999945 69999974 -72271470 + AT_rich Low_complexity Low_complexity 1 29 0 333 353 16 0 chr9 70000789 70000911 -72270533 - MIR3 SINE MIR -17 191 68 381 287 105 35 chr9 70001404 70001547 -72269897 + MIR SINE MIR 21 173 -89 2225 203 34 0 chr9 70001673 70002141 -72269303 - MER68 LTR ERV1 -78 484 1 1804 179 13 0 chr9 70003180 70003487 -72267957 - AluJb SINE Alu -1 311 1 556 266 85 39 chr9 70003630 70003935 -72267509 - HAL1 LINE L1 -1465 1042 724 260 264 146 11 chr9 70004598 70004776 -72266668 - L1MDa LINE L1 -2310 4334 4133 302 278 39 56 chr9 70004812 70004992 -72266452 - L1MDa LINE L1 -2838 3806 3630 234 290 70 59 chr9 70005021 70005497 -72265947 - L1MDa LINE L1 -3090 3554 3067 2056 131 0 0 chr9 70005497 70005808 -72265636 - AluSx SINE Alu 0 311 1 234 290 70 59 chr9 70005808 70005919 -72265525 - L1MDa LINE L1 -3577 3067 2959 225 0 0 0 chr9 70006346 70006371 -72265073 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1126 169 62 13 chr9 70006387 70006612 -72264832 + MER46A DNA MER2_type 1 236 0 419 209 0 2 chr9 70006724 70006817 -72264627 - L1MDa LINE L1 -3858 2786 2698 500 207 0 0 chr9 70006867 70006949 -72264495 - MER21B LTR ERV1 -767 96 15 409 303 27 16 chr9 70006966 70007154 -72264290 - L1MDa LINE L1 -4489 2157 1968 264 114 0 0 chr9 70007149 70007193 -72264251 - L1MDa LINE L1 -5323 1219 1176 * 707 106 26 9 chr9 70007194 70007307 -72264137 - MER75 DNA T2_type -1 513 399 294 159 0 0 chr9 70007303 70007347 -72264097 - MER75 DNA T2_type -470 44 1 * 1748 198 27 40 chr9 70007347 70007797 -72263647 - L1MDa LINE L1 -5363 1179 736 293 206 16 0 chr9 70007793 70007856 -72263588 - L1MDa LINE L1 -6365 177 114 * 1747 204 39 69 chr9 70007854 70008290 -72263154 - L1M4 LINE L1 -5799 743 321 234 45 0 136 chr9 70008291 70008335 -72263109 + MADE1 DNA Mariner 1 38 -42 1447 208 3 37 chr9 70008341 70008663 -72262781 - L1M4 LINE L1 -6227 315 5 571 222 97 6 chr9 70008669 70008845 -72262599 - L1M4 LINE L1 -1511 4635 4444 3043 255 86 32 chr9 70008869 70010156 -72261288 - L1M4 LINE L1 -1886 4260 2905 727 261 64 0 chr9 70010158 70010361 -72261083 - L1ME LINE L1 -389 5777 5562 1941 318 88 45 chr9 70010490 70011654 -72259790 - L2 LINE L2 -1763 1551 333 2476 58 0 19 chr9 70011654 70011964 -72259480 + AluY SINE Alu 1 304 -7 1941 318 88 45 chr9 70011964 70011997 -72259447 - L2 LINE L2 -2981 333 303 22 0 0 0 chr9 70012656 70012678 -72258766 + AT_rich Low_complexity Low_complexity 1 22 0 1744 112 37 0 chr9 70012796 70013037 -72258407 + AluSx SINE Alu 47 296 -16 2785 122 11 2 chr9 70013503 70013936 -72257508 - Tigger4(Zombi) DNA MER2_type 0 2731 2295 561 149 0 0 chr9 70013933 70014020 -72257424 - Tigger4(Zombi) DNA MER2_type -2644 87 1 * 192 419 0 0 chr9 70014169 70014262 -72257182 - L2 LINE L2 -1 3312 3220 309 239 44 9 chr9 70015275 70015388 -72256056 - HAL1 LINE L1 -113 2394 2278 30 27 0 0 chr9 70015452 70015489 -72255955 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr9 70015793 70015816 -72255628 + AT_rich Low_complexity Low_complexity 1 23 0 768 284 134 22 chr9 70015880 70016253 -72255191 - HAL1 LINE L1 -608 1899 1465 255 31 0 0 chr9 70016253 70016285 -72255159 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 768 284 134 22 chr9 70016285 70016366 -72255078 - HAL1 LINE L1 -1042 1465 1394 448 250 32 19 chr9 70018078 70018234 -72253210 + L1ME LINE L1 5661 5818 -303 1721 145 7 51 chr9 70018561 70018689 -72252755 + AluSx SINE Alu 1 133 -179 2011 116 21 0 chr9 70018689 70018974 -72252470 + AluSc SINE Alu 1 291 -18 1721 145 7 51 chr9 70018974 70019141 -72252303 + AluSx SINE Alu 133 283 -29 237 65 0 0 chr9 70019145 70019176 -72252268 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 2006 143 13 7 chr9 70019418 70019718 -72251726 + AluJb SINE Alu 1 302 -10 23 0 0 0 chr9 70019772 70019795 -72251649 + AT_rich Low_complexity Low_complexity 1 23 0 402 268 124 48 chr9 70020068 70020277 -72251167 - MIR SINE MIR -30 232 8 1246 179 86 38 chr9 70020556 70020847 -72250597 - AluJo SINE Alu -7 305 1 2120 140 7 0 chr9 70020875 70021183 -72250261 + AluSx SINE Alu 1 310 -2 767 272 70 19 chr9 70022302 70022515 -72248929 + MIR SINE MIR 1 224 -38 380 184 70 18 chr9 70023447 70023561 -72247883 + MER113 DNA MER1_type? 38 157 -364 1064 159 0 0 chr9 70023581 70023738 -72247706 + AluSx SINE Alu 1 157 -155 2016 240 210 11 chr9 70023741 70023976 -72247468 - L1MC4 LINE L1 -723 7319 7132 2331 78 0 14 chr9 70023976 70024272 -72247172 - AluSq SINE Alu -19 294 3 2016 240 210 11 chr9 70024272 70024794 -72246650 - L1MC4 LINE L1 -910 7132 6411 2268 54 54 7 chr9 70024794 70025090 -72246354 + AluY SINE Alu 1 310 -1 408 228 42 56 chr9 70025151 70025366 -72246078 - L1M4 LINE L1 -1672 4474 4263 13266 114 36 83 chr9 70025394 70026338 -72245106 - Tigger1 DNA MER2_type -46 2372 1385 2040 121 11 4 chr9 70026338 70026618 -72244826 - AluSx SINE Alu -30 282 1 13266 114 36 83 chr9 70026618 70028083 -72243361 - Tigger1 DNA MER2_type -1033 1385 82 627 90 11 0 chr9 70028083 70028172 -72243272 - HY4 scRNA scRNA -3 90 1 13266 114 36 83 chr9 70028172 70028250 -72243194 - Tigger1 DNA MER2_type -2336 82 2 487 220 93 20 chr9 70028251 70028401 -72243043 - L1M4 LINE L1 -1883 4263 4103 263 150 0 0 chr9 70028402 70028442 -72243002 - THE1C LTR MaLR 0 428 389 1243 114 11 0 chr9 70028443 70028619 -72242825 + AluSg/x SINE Alu 133 310 -2 1536 147 77 43 chr9 70028622 70028949 -72242495 - THE1C LTR MaLR -37 338 1 2125 261 73 8 chr9 70028949 70029678 -72241766 - L1M4 LINE L1 -2040 4106 3331 1759 252 64 86 chr9 70029693 70029949 -72241495 - L1ME LINE L1 -5158 912 652 213 0 26 51 chr9 70029949 70029988 -72241456 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1998 119 0 7 chr9 70029992 70030270 -72241174 - AluSq SINE Alu -37 276 1 1759 252 64 86 chr9 70030270 70030931 -72240513 - L1ME LINE L1 -5421 649 10 504 192 85 34 chr9 70030934 70031111 -72240333 - L1MC5 LINE L1 -166 7795 7610 25 65 0 0 chr9 70031617 70031663 -72239781 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr9 70032773 70032796 -72238648 + AT_rich Low_complexity Low_complexity 1 23 0 1551 168 24 40 chr9 70034572 70034869 -72236575 + AluJb SINE Alu 2 293 -19 23 54 0 0 chr9 70035226 70035263 -72236181 + AT_rich Low_complexity Low_complexity 1 37 0 4357 169 69 41 chr9 70035639 70036647 -72234797 - Charlie1a DNA MER1_type -21 1434 398 469 157 0 0 chr9 70036676 70036746 -72234698 - MER2 DNA MER2_type 0 345 276 792 162 0 0 chr9 70036747 70036864 -72234580 + FLAM_C SINE Alu 1 117 -16 1833 139 3 7 chr9 70036894 70037181 -72234263 - MER2 DNA MER2_type -58 287 2 1674 215 11 39 chr9 70037188 70037570 -72233874 - Charlie1a DNA MER1_type -1084 371 1 1899 146 38 0 chr9 70037865 70038152 -72233292 - AluJo SINE Alu -14 298 1 2169 110 7 3 chr9 70039024 70039323 -72232121 + AluSq SINE Alu 1 300 -13 455 266 156 0 chr9 70039542 70039696 -72231748 + MIR SINE MIR 2 179 -83 888 247 72 121 chr9 70041064 70041749 -72229695 - MER21B LTR ERV1 -156 707 57 650 209 34 0 chr9 70042696 70042844 -72228600 + L1MB7 LINE L1 6019 6171 -13 241 200 114 29 chr9 70042905 70043010 -72228434 + L1MC4a LINE L1 5826 5939 -1869 204 67 0 0 chr9 70043067 70043097 -72228347 + (T)n Simple_repeat Simple_repeat 1 30 0 234 311 178 21 chr9 70043231 70043607 -72227837 + L1MC4a LINE L1 6215 6649 -1159 * 815 218 103 73 chr9 70043597 70043955 -72227489 + L1MC5 LINE L1 6689 7057 -904 516 203 191 57 chr9 70043956 70044271 -72227173 + L1MC5 LINE L1 6931 7287 -674 1669 153 181 11 chr9 70044276 70044635 -72226809 - MSTA LTR MaLR -8 420 1 9173 143 16 30 chr9 70044635 70046235 -72225209 - MSTA-int LTR MaLR 0 1580 3 1842 150 169 0 chr9 70046237 70046603 -72224841 - MSTA LTR MaLR 0 428 1 471 215 55 49 chr9 70046605 70046648 -72224796 + L1MC5 LINE L1 7289 7330 -631 973 166 112 44 chr9 70046648 70046853 -72224591 - MER20 DNA MER1_type 0 219 1 471 215 55 49 chr9 70046853 70046972 -72224472 + L1MC5 LINE L1 7330 7452 -509 1352 186 108 22 chr9 70046972 70047015 -72224429 - Charlie5 DNA MER1_type 0 2624 2586 1957 114 37 13 chr9 70047015 70047313 -72224131 - AluSx SINE Alu -7 305 1 1352 186 108 22 chr9 70047313 70047629 -72223815 - Charlie5 DNA MER1_type -38 2586 2234 494 208 23 15 chr9 70047631 70047761 -72223683 - MER3 DNA MER1_type -47 162 32 1536 170 51 57 chr9 70047764 70048218 -72223226 + L1MC5 LINE L1 7480 7930 -31 868 235 28 23 chr9 70048214 70048431 -72223013 + L1ME1 LINE L1 34 251 -6145 * 4252 216 98 105 chr9 70048444 70048710 -72222734 + L1ME1 LINE L1 3374 3640 -2575 1837 169 7 13 chr9 70048710 70049018 -72222426 + AluJb SINE Alu 1 306 -6 4252 216 98 105 chr9 70049018 70049778 -72221666 + L1ME1 LINE L1 3640 4404 -1811 707 257 0 23 chr9 70049778 70049953 -72221491 + AluJb SINE Alu 121 291 -21 1967 124 0 0 chr9 70049955 70050221 -72221223 + AluSx SINE Alu 37 302 -10 4252 216 98 105 chr9 70050221 70050991 -72220453 + L1ME1 LINE L1 4405 5334 -881 495 234 104 52 chr9 70050999 70051191 -72220253 + MER58C DNA MER1_type 14 215 0 1362 217 122 63 chr9 70051199 70051680 -72219764 + L1ME1 LINE L1 5338 5819 -414 1770 182 18 0 chr9 70051680 70051966 -72219478 + AluJb SINE Alu 1 291 -21 1362 217 122 63 chr9 70051966 70052147 -72219297 + L1ME1 LINE L1 5819 5988 -245 484 192 39 0 chr9 70052150 70052254 -72219190 + L1MA10 LINE L1 6186 6293 -41 2358 91 60 20 chr9 70053295 70053645 -72217799 - THE1B LTR MaLR 0 364 1 2067 113 32 26 chr9 70053917 70054226 -72217218 - AluSx SINE Alu -1 311 1 1604 172 20 10 chr9 70054485 70054781 -72216663 - AluJo SINE Alu -13 299 1 688 208 0 0 chr9 70055360 70055480 -72215964 + FLAM_A SINE Alu 16 135 -7 2595 44 0 0 chr9 70055618 70055914 -72215530 + AluY SINE Alu 1 296 -15 259 329 59 33 chr9 70056434 70056586 -72214858 + MIR SINE MIR 86 241 -21 5703 21 0 0 chr9 70058172 70058853 -72212591 + L1PA3 LINE L1 5455 6135 -20 199 0 31 31 chr9 70058857 70058889 -72212555 + (TAA)n Simple_repeat Simple_repeat 1 32 0 349 293 126 17 chr9 70059021 70059202 -72212242 + MIR SINE MIR 45 250 -12 519 307 78 28 chr9 70059521 70059739 -72211705 + MIR SINE MIR 20 248 -14 288 300 44 0 chr9 70059768 70059858 -72211586 + L2 LINE L2 3179 3272 0 1962 126 7 21 chr9 70060003 70060326 -72211118 + AluSx SINE Alu 1 319 0 25 0 0 0 chr9 70060877 70060902 -72210542 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr9 70061030 70061060 -72210384 + AT_rich Low_complexity Low_complexity 1 30 0 1445 301 99 42 chr9 70061762 70062684 -72208760 - L2 LINE L2 -71 3242 2266 1795 186 3 0 chr9 70064880 70065176 -72206268 + AluJb SINE Alu 1 297 -15 692 143 40 48 chr9 70065288 70065414 -72206030 + FLAM_C SINE Alu 1 125 -8 295 169 0 31 chr9 70065414 70065479 -72205965 + Charlie5 DNA MER1_type 2522 2584 -28 2136 124 7 0 chr9 70065538 70065837 -72205607 - AluSx SINE Alu -11 301 1 305 122 0 20 chr9 70065956 70066005 -72205439 - L2 LINE L2 0 3313 3266 32 26 0 0 chr9 70066412 70066451 -72204993 + AT_rich Low_complexity Low_complexity 1 39 0 2025 147 0 7 chr9 70067540 70067840 -72203604 + AluJb SINE Alu 1 298 -14 1883 126 0 18 chr9 70068264 70068542 -72202902 + AluSx SINE Alu 1 273 -39 22 0 0 0 chr9 70069219 70069241 -72202203 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 70069565 70069600 -72201844 + AT_rich Low_complexity Low_complexity 1 35 0 2194 86 0 4 chr9 70070682 70070995 -72200449 - AluSg SINE Alu 0 312 1 25 31 0 0 chr9 70071717 70071749 -72199695 + AT_rich Low_complexity Low_complexity 1 32 0 261 231 92 0 chr9 70071784 70071849 -72199595 + MIR SINE MIR 122 192 -70 23 68 0 0 chr9 70072145 70072189 -72199255 + AT_rich Low_complexity Low_complexity 1 44 0 554 178 93 0 chr9 70072854 70072961 -72198483 - FLAM_C SINE Alu -16 117 1 189 197 66 16 chr9 70073018 70073079 -72198365 - MIR3 SINE MIR -19 189 126 2270 88 10 3 chr9 70073104 70073399 -72198045 - AluSq SINE Alu -16 297 1 199 283 0 101 chr9 70073488 70073533 -72197911 - MIR SINE MIR -74 134 103 657 164 31 8 chr9 70073533 70073661 -72197783 - FLAM_C SINE Alu 0 133 3 199 283 0 101 chr9 70073661 70073714 -72197730 - MIR SINE MIR -105 103 46 601 302 51 51 chr9 70073989 70074108 -72197336 - MLT1J LTR MaLR -160 351 233 725 174 16 0 chr9 70074108 70074229 -72197215 + FLAM_A SINE Alu 5 127 -6 601 302 51 51 chr9 70074229 70074460 -72196984 - MLT1J LTR MaLR -277 234 1 642 270 150 13 chr9 70074587 70074820 -72196624 + L2 LINE L2 3049 3313 0 28 0 0 0 chr9 70075177 70075205 -72196239 + AT_rich Low_complexity Low_complexity 1 28 0 1671 109 8 27 chr9 70075526 70075821 -72195623 - AluSq SINE Alu 0 313 42 1935 112 26 40 chr9 70076383 70076546 -72194898 - AluSq SINE Alu -13 300 141 2392 109 0 0 chr9 70076546 70076857 -72194587 - AluSx SINE Alu -1 311 1 1935 112 26 40 chr9 70076857 70076996 -72194448 - AluSq SINE Alu -172 141 2 390 94 141 0 chr9 70077188 70077252 -72194192 - MADE1 DNA Mariner 0 80 8 344 296 68 43 chr9 70077314 70077367 -72194077 - MIR SINE MIR -54 208 158 2324 90 3 10 chr9 70077367 70077678 -72193766 + AluSp SINE Alu 1 309 -4 344 296 68 43 chr9 70077678 70077786 -72193658 - MIR SINE MIR -104 158 43 237 245 86 53 chr9 70078027 70078178 -72193266 + L1MC/D LINE L1 5751 5906 -1902 1143 118 0 0 chr9 70078451 70078603 -72192841 - AluSq SINE Alu -28 285 134 250 250 89 0 chr9 70079835 70079959 -72191485 - L1P5 LINE L1 -700 5451 5317 630 115 0 10 chr9 70080053 70080157 -72191287 - LTR12 LTR ERV1 0 714 612 295 160 0 40 chr9 70080204 70080279 -72191165 - LTR30 LTR ERV1 -98 624 553 931 177 105 34 chr9 70080280 70080607 -72190837 - LTR12 LTR ERV1 -429 285 1 360 200 0 0 chr9 70080642 70080702 -72190742 - MER2 DNA MER2_type 0 345 286 463 231 38 71 chr9 70080823 70080919 -72190525 + L1ME1 LINE L1 4018 4116 -2030 2417 95 0 13 chr9 70080919 70081234 -72190210 - AluY SINE Alu 0 311 1 463 231 38 71 chr9 70081234 70081349 -72190095 + L1ME1 LINE L1 4116 4222 -1924 3588 221 52 29 chr9 70081473 70082052 -72189392 + L1ME1 LINE L1 4232 4796 -1370 1901 139 0 44 chr9 70082052 70082369 -72189075 + AluJb SINE Alu 1 303 -9 3588 221 52 29 chr9 70082369 70082533 -72188911 + L1ME1 LINE L1 4796 4955 -1211 1027 177 0 0 chr9 70082533 70082691 -72188753 + FAM SINE Alu 1 158 -17 3588 221 52 29 chr9 70082691 70083646 -72187798 + L1ME1 LINE L1 4955 5972 -194 1356 111 6 0 chr9 70083704 70083926 -72187518 - AluSg/x SINE Alu 0 325 103 1389 139 14 0 chr9 70085092 70085315 -72186129 + AluSg/x SINE Alu 83 308 -4 682 204 0 0 chr9 70085470 70085583 -72185861 + AluJo/FLAM SINE Alu 2 114 -188 2068 134 3 0 chr9 70085586 70085885 -72185559 + AluSx SINE Alu 1 300 -12 2254 121 0 3 chr9 70086032 70086402 -72185042 + AluSx SINE Alu 1 369 0 23 0 0 0 chr9 70086480 70086503 -72184941 + AT_rich Low_complexity Low_complexity 1 23 0 1684 162 11 4 chr9 70086509 70086780 -72184664 + AluJb SINE Alu 1 273 -39 1964 95 10 58 chr9 70086926 70087220 -72184224 + AluSx SINE Alu 1 280 -32 300 154 0 0 chr9 70087220 70087272 -72184172 + G-rich Low_complexity Low_complexity 1 52 0 1794 184 3 7 chr9 70087516 70087825 -72183619 + AluJo SINE Alu 1 308 -4 441 94 0 0 chr9 70088012 70088076 -72183368 + Alu SINE Alu 235 298 -11 2213 124 0 13 chr9 70088082 70088397 -72183047 + AluSx SINE Alu 1 311 -1 298 329 21 51 chr9 70088397 70088634 -72182810 - MLT1K LTR MaLR -84 504 275 1499 173 20 4 chr9 70088740 70088988 -72182456 + AluJb SINE Alu 1 252 -60 700 185 68 0 chr9 70089042 70089204 -72182240 + LTR52 LTR ERVL 245 417 -4 281 143 0 0 chr9 70089284 70089333 -72182111 + AluJb SINE Alu 250 298 -4 2350 94 3 3 chr9 70089442 70089740 -72181704 - AluSp SINE Alu -15 298 1 2149 133 0 13 chr9 70089740 70090049 -72181395 - AluSq SINE Alu -8 305 1 447 100 25 25 chr9 70090069 70090149 -72181295 + L1MA8 LINE L1 6200 6279 -12 1451 118 84 19 chr9 70091776 70092039 -72179405 + AluSx SINE Alu 1 280 -32 22 0 0 0 chr9 70092543 70092565 -72178879 + AT_rich Low_complexity Low_complexity 1 22 0 932 116 0 0 chr9 70092742 70092871 -72178573 - FLAM_C SINE Alu -3 130 2 324 140 0 0 chr9 70093085 70093135 -72178309 - MER58 DNA MER1_type -16 2404 2355 771 209 48 48 chr9 70093151 70093381 -72178063 - MER58 DNA MER1_type -2188 232 3 263 274 126 37 chr9 70093556 70093691 -72177753 - MIR SINE MIR -39 223 77 2567 112 35 40 chr9 70093708 70093906 -72177538 + MSTA LTR MaLR 1 198 -230 2183 117 0 16 chr9 70093906 70094213 -72177231 + AluSq SINE Alu 1 302 -11 2567 112 35 40 chr9 70094213 70094306 -72177138 + MSTA LTR MaLR 198 290 -138 2125 124 10 3 chr9 70094306 70094613 -72176831 + AluSx SINE Alu 1 309 -3 2567 112 35 40 chr9 70094613 70094750 -72176694 + MSTA LTR MaLR 290 428 0 428 248 174 60 chr9 70095157 70095439 -72176005 - L1ME4a LINE L1 0 6121 5808 553 282 115 32 chr9 70095689 70095724 -72175720 - L1ME4a LINE L1 -296 5825 5794 2169 96 4 4 chr9 70095724 70096045 -72175399 - AluSx SINE Alu 0 323 3 553 282 115 32 chr9 70096045 70096512 -72174932 - L1ME4a LINE L1 -327 5794 5280 1268 202 143 0 chr9 70096842 70097100 -72174344 - AluJo SINE Alu -7 295 1 2335 106 0 0 chr9 70097124 70097427 -72174017 - AluSg SINE Alu -7 303 1 1510 185 43 36 chr9 70097635 70097937 -72173507 - AluJo SINE Alu -8 304 1 547 300 184 7 chr9 70098188 70098638 -72172806 - L1ME4a LINE L1 -2828 3318 2789 851 133 8 0 chr9 70098645 70098773 -72172671 - FRAM SINE Alu -22 154 26 1652 311 120 23 chr9 70098908 70100326 -72171118 + L2 LINE L2 1754 3310 -3 447 341 84 9 chr9 70100369 70100583 -72170861 + MIR SINE MIR 20 249 -13 243 0 0 0 chr9 70100615 70100642 -72170802 + (CA)n Simple_repeat Simple_repeat 1 27 0 207 146 0 0 chr9 70103930 70103971 -72167473 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1893 154 38 24 chr9 70104593 70104963 -72166481 + MLT1B LTR MaLR 16 390 0 2353 86 0 3 chr9 70105343 70105633 -72165811 + AluSx SINE Alu 16 304 -8 301 244 67 25 chr9 70105634 70105753 -72165691 - L3 LINE CR1 -285 1292 1169 416 266 148 20 chr9 70105762 70105965 -72165479 - MIR SINE MIR -32 230 2 213 39 0 0 chr9 70107103 70107129 -72164315 + (CA)n Simple_repeat Simple_repeat 2 27 0 1222 169 108 58 chr9 70108166 70108491 -72162953 + MER58B DNA MER1_type 1 341 0 1009 157 19 0 chr9 70108511 70108670 -72162774 + AluSg/x SINE Alu 136 297 -15 1664 124 4 20 chr9 70110266 70110515 -72160929 + AluJb SINE Alu 58 302 -10 805 171 0 0 chr9 70110572 70110695 -72160749 + FLAM_C SINE Alu 1 123 -20 195 42 0 0 chr9 70110766 70110790 -72160654 + (CA)n Simple_repeat Simple_repeat 1 24 0 349 329 92 24 chr9 70110827 70111249 -72160195 + L1MC4a LINE L1 3909 4359 -1787 593 302 111 54 chr9 70111262 70112132 -72159312 + L1MC4a LINE L1 4457 4956 -1190 1569 186 36 4 chr9 70112132 70112437 -72159007 + AluJb SINE Alu 1 314 0 593 302 111 54 chr9 70112437 70112911 -72158533 + L1MC4a LINE L1 4956 5401 -745 745 203 15 0 chr9 70112978 70113111 -72158333 + AluSq/x SINE Alu 2 136 -177 21 0 0 0 chr9 70113275 70113296 -72158148 + AT_rich Low_complexity Low_complexity 1 21 0 771 180 0 0 chr9 70113368 70113490 -72157954 + FLAM_C SINE Alu 2 123 -20 2166 108 0 29 chr9 70113654 70113960 -72157484 + AluSx SINE Alu 1 297 -15 2284 106 0 10 chr9 70114960 70115262 -72156182 - AluSx SINE Alu -13 299 1 1810 147 44 7 chr9 70115312 70115605 -72155839 - AluJb SINE Alu -8 304 1 261 283 17 67 chr9 70115794 70115914 -72155530 - MIR3 SINE MIR -87 121 8 1559 185 3 50 chr9 70117521 70117824 -72153620 + AluJo SINE Alu 1 289 -23 416 59 0 0 chr9 70117824 70117875 -72153569 + AluSq/x SINE Alu 85 135 -178 2223 116 3 3 chr9 70117875 70118186 -72153258 + AluSx SINE Alu 1 311 -1 2181 108 10 13 chr9 70118203 70118547 -72152897 + AluSx SINE Alu 1 312 0 2153 128 0 0 chr9 70119338 70119643 -72151801 + AluSx SINE Alu 1 305 -7 1193 278 126 40 chr9 70119676 70120208 -72151236 + MLT1K LTR MaLR 11 588 0 385 257 76 29 chr9 70120522 70120693 -72150751 + MIR SINE MIR 83 261 -1 1356 151 76 93 chr9 70120788 70121079 -72150365 + AluJb SINE Alu 1 286 -26 25 0 0 0 chr9 70121081 70121106 -72150338 + AT_rich Low_complexity Low_complexity 1 25 0 480 291 42 19 chr9 70121213 70121426 -72150018 - MIR SINE MIR -44 218 1 223 231 0 0 chr9 70123346 70123385 -72148059 + polypurine Low_complexity Low_complexity 2 40 0 626 193 11 74 chr9 70124415 70124562 -72146882 + MER106A DNA MER1_type 16 152 -84 1477 116 0 5 chr9 70124562 70124760 -72146684 + AluSx SINE Alu 1 197 -115 626 193 11 74 chr9 70124760 70124788 -72146656 + MER106A DNA MER1_type 152 180 -56 1107 130 0 0 chr9 70125471 70125703 -72145741 + (TA)n Simple_repeat Simple_repeat 1 232 0 215 301 122 0 chr9 70126415 70126538 -72144906 - MIR SINE MIR -8 254 117 1040 211 28 5 chr9 70126622 70126835 -72144609 - Charlie8 DNA MER1_type -2199 218 1 252 0 0 0 chr9 70128657 70128685 -72142759 + (A)n Simple_repeat Simple_repeat 1 28 0 231 36 0 0 chr9 70129923 70129951 -72141493 + (CGCGG)n Simple_repeat Simple_repeat 4 31 0 21 0 0 0 chr9 70129956 70129977 -72141467 + GC_rich Low_complexity Low_complexity 1 21 0 30 93 0 0 chr9 70130056 70130142 -72141302 + GC_rich Low_complexity Low_complexity 1 86 0 308 292 73 29 chr9 70131518 70131655 -72139789 - MIR3 SINE MIR -61 147 5 943 144 20 20 chr9 70132125 70132278 -72139166 + AluJb SINE Alu 129 281 -31 218 245 0 0 chr9 70132541 70132594 -72138850 - MIR SINE MIR -14 248 196 225 238 172 40 chr9 70133304 70133455 -72137989 - L2 LINE L2 0 3313 3143 232 271 14 14 chr9 70134017 70134087 -72137357 + MIR3 SINE MIR 111 180 -28 2360 72 7 13 chr9 70134388 70134694 -72136750 - AluSx SINE Alu -8 304 1 205 149 43 43 chr9 70134831 70134878 -72136566 - MER5A DNA MER1_type -30 159 113 1403 270 124 39 chr9 70135762 70136073 -72135371 + MLT1K LTR MaLR 2 285 -303 1831 168 13 7 chr9 70136073 70136371 -72135073 - AluSx SINE Alu -12 300 1 1403 270 124 39 chr9 70136371 70136600 -72134844 + MLT1K LTR MaLR 285 588 0 2278 102 3 0 chr9 70136724 70137042 -72134402 + AluSq SINE Alu 1 313 0 1691 126 47 0 chr9 70137055 70137333 -72134111 + L1MA4A LINE L1 6006 6296 -7 724 269 149 26 chr9 70137553 70137943 -72133501 + LTR33 LTR ERVL 80 517 -4 828 296 59 4 chr9 70138265 70138518 -72132926 + LTR33 LTR ERVL 2 268 -253 444 143 165 60 chr9 70138547 70138680 -72132764 + LTR33 LTR ERVL 368 514 -7 718 301 162 0 chr9 70139089 70139385 -72132059 - MLT1I LTR MaLR -17 392 49 646 214 8 0 chr9 70139390 70139507 -72131937 - FLAM_C SINE Alu -25 118 1 1561 154 11 32 chr9 70139536 70139821 -72131623 - L1MB5 LINE L1 -8 6166 5888 1516 194 4 14 chr9 70140252 70140530 -72130914 - AluJo SINE Alu -16 296 22 599 221 89 6 chr9 70142601 70142759 -72128685 - MER117 DNA MER1_type -26 171 1 1362 175 122 4 chr9 70143610 70143873 -72127571 - AluJo SINE Alu -18 294 1 23 0 0 0 chr9 70144330 70144353 -72127091 + AT_rich Low_complexity Low_complexity 1 23 0 954 226 0 44 chr9 70144364 70144590 -72126854 - MER20 DNA MER1_type -2 217 2 1822 195 25 8 chr9 70144737 70145096 -72126348 + MLT1A1 LTR MaLR 1 365 0 406 320 34 6 chr9 70145261 70145426 -72126018 - MIR SINE MIR -64 144 23 2008 154 0 3 chr9 70145648 70145947 -72125497 - AluSx SINE Alu -14 298 1 30 0 0 0 chr9 70146347 70146377 -72125067 + AT_rich Low_complexity Low_complexity 1 30 0 246 247 65 13 chr9 70146713 70146790 -72124654 - MER117 DNA MER1_type -60 137 57 1040 178 18 0 chr9 70147007 70147176 -72124268 + FAM SINE Alu 1 172 -3 2268 88 0 7 chr9 70147285 70147579 -72123865 + AluSc SINE Alu 2 293 -16 1503 171 4 21 chr9 70148782 70149063 -72122381 - AluJo SINE Alu -1 311 36 1863 245 29 41 chr9 70149484 70150097 -72121347 - L1MC5 LINE L1 -731 7230 6625 850 107 0 0 chr9 70150153 70150265 -72121179 + AluJb SINE Alu 1 112 -200 2287 99 0 3 chr9 70150326 70150618 -72120826 + AluSx SINE Alu 2 292 -20 229 248 114 34 chr9 70150792 70150941 -72120503 + MER104 DNA Tc2 4 164 -16 2342 178 48 14 chr9 70151034 70151518 -72119926 - MLT1D LTR MaLR -3 502 3 2033 133 3 0 chr9 70152257 70152568 -72118876 + AluSx SINE Alu 1 312 0 1905 149 3 13 chr9 70152738 70153047 -72118397 - AluSp SINE Alu -7 306 1 223 301 153 37 chr9 70153218 70153381 -72118063 - L3 LINE CR1 -8 1569 1388 1873 179 45 11 chr9 70153882 70154235 -72117209 + MLT1A1 LTR MaLR 1 365 0 917 252 57 66 chr9 70154503 70154714 -72116730 - MER102b DNA MER1_type -1113 315 105 1832 154 0 14 chr9 70154714 70155026 -72116418 - AluJb SINE Alu 0 310 3 917 252 57 66 chr9 70155026 70155131 -72116313 - MER102b DNA MER1_type -1323 105 1 254 291 58 0 chr9 70155954 70156040 -72115404 + Charlie8 DNA MER1_type 1 91 -2326 2254 101 3 10 chr9 70160430 70160736 -72110708 - AluSq SINE Alu -9 304 1 333 267 48 0 chr9 70160736 70160841 -72110603 + L2 LINE L2 2100 2209 -1105 643 225 0 0 chr9 70160860 70160980 -72110464 + FRAM SINE Alu 11 130 -46 278 50 25 0 chr9 70161044 70161084 -72110360 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 2131 130 16 0 chr9 70161087 70161394 -72110050 - AluSx SINE Alu 0 312 1 1602 269 47 30 chr9 70161394 70162183 -72109261 + L2 LINE L2 2254 3053 -260 463 307 51 23 chr9 70162555 70162770 -72108674 + MIR SINE MIR 20 240 -22 475 280 0 13 chr9 70162770 70162920 -72108524 - LTR16C LTR ERVL 0 491 344 1520 88 200 8 chr9 70162922 70163172 -72108272 - AluSx SINE Alu 0 302 5 23 33 0 0 chr9 70163476 70163506 -72107938 + AT_rich Low_complexity Low_complexity 1 30 0 558 204 171 0 chr9 70163529 70163681 -72107763 - MER5A DNA MER1_type 0 189 12 226 264 0 42 chr9 70163705 70163777 -72107667 - L2 LINE L2 -17 3255 3187 524 229 37 0 chr9 70163777 70163886 -72107558 + MLT1D LTR MaLR 6 118 -387 1985 143 3 0 chr9 70163900 70164193 -72107251 - AluSx SINE Alu -18 294 1 760 192 0 0 chr9 70164197 70164322 -72107122 - FLAM_C SINE Alu -16 127 3 945 189 117 1 chr9 70164323 70164637 -72106807 + MLT1D LTR MaLR 127 503 -2 405 240 28 98 chr9 70164685 70164727 -72106717 + L1MEc LINE L1 1792 1835 -4561 2287 92 0 10 chr9 70164727 70165019 -72106425 - AluSp SINE Alu -24 289 1 405 240 28 98 chr9 70165019 70165032 -72106412 + L1MEc LINE L1 1835 1847 -4549 2086 103 43 13 chr9 70165032 70165332 -72106112 - AluSc SINE Alu 0 309 1 405 240 28 98 chr9 70165332 70165529 -72105915 + L1MEc LINE L1 1847 2027 -4369 253 292 133 9 chr9 70165699 70165812 -72105632 - L2 LINE L2 -212 3060 2934 1600 212 11 60 chr9 70165911 70165975 -72105469 - MLT1A1 LTR MaLR 0 365 299 1922 145 3 10 chr9 70165975 70166106 -72105338 + AluSx SINE Alu 5 135 -177 2446 84 0 0 chr9 70166106 70166404 -72105040 + AluY SINE Alu 1 298 -13 1922 145 3 10 chr9 70166404 70166562 -72104882 + AluSx SINE Alu 135 292 -20 1600 212 11 60 chr9 70166562 70166879 -72104565 - MLT1A1 LTR MaLR -66 299 3 305 267 53 12 chr9 70167113 70167219 -72104225 + MLT1L LTR MaLR 403 604 0 713 107 50 25 chr9 70167246 70167367 -72104077 - FLAM_C SINE Alu 0 143 20 753 171 0 0 chr9 70167759 70167876 -72103568 + FLAM_C SINE Alu 2 118 -25 2137 123 3 3 chr9 70167880 70168181 -72103263 - AluSx SINE Alu -11 301 1 2058 94 20 7 chr9 70168493 70168791 -72102653 - L1MA4 LINE L1 -220 6080 5779 2071 135 3 35 chr9 70168794 70169105 -72102339 - AluSx SINE Alu -11 301 1 7955 11 1 0 chr9 70169161 70170049 -72101395 + L1HS LINE L1 5266 6154 -1 2091 172 17 5 chr9 70170057 70170459 -72100985 - L1 LINE L1 -823 5323 4917 1236 129 0 16 chr9 70170474 70170668 -72100776 + L1M1 LINE L1 5564 5754 -546 * 1422 115 23 191 chr9 70170662 70170874 -72100570 - L1 LINE L1 -1226 4920 4801 1898 141 18 0 chr9 70170874 70171186 -72100258 - AluSx SINE Alu 0 317 1 1422 115 23 191 chr9 70171186 70171364 -72100080 - L1 LINE L1 -1345 4801 4595 919 206 0 28 chr9 70171482 70171662 -72099782 + FAM SINE Alu 1 175 0 722 103 0 125 chr9 70171916 70172052 -72099392 - FLAM_C SINE Alu -10 133 15 1297 252 87 44 chr9 70172131 70172473 -72098971 - L1MC4a LINE L1 -1981 5827 5452 847 168 62 19 chr9 70172473 70172634 -72098810 + FAM SINE Alu 1 168 -7 1297 252 87 44 chr9 70172634 70172834 -72098610 - L1MC4a LINE L1 -2356 5452 5262 2063 138 0 0 chr9 70173107 70173404 -72098040 + AluSx SINE Alu 2 298 -14 578 119 0 0 chr9 70173520 70173604 -72097840 - AluJ/FLAM SINE Alu -227 85 2 341 276 128 19 chr9 70173619 70173775 -72097669 - L1MC4a LINE L1 -1907 4239 4067 260 240 40 13 chr9 70173801 70173876 -72097568 - L1ME LINE L1 -527 5594 5518 775 158 104 22 chr9 70173888 70174071 -72097373 - L1MC4a LINE L1 -2102 4044 3847 966 181 32 21 chr9 70174073 70174261 -72097183 - AluJo SINE Alu -2 310 121 1919 160 3 3 chr9 70174269 70174581 -72096863 - AluJb SINE Alu 0 312 1 2279 117 0 0 chr9 70174626 70174933 -72096511 - AluSx SINE Alu -5 307 1 662 101 20 0 chr9 70174986 70175085 -72096359 + AluSp/q SINE Alu 206 306 -7 180 0 0 0 chr9 70175132 70175152 -72096292 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 493 287 216 38 chr9 70175175 70175670 -72095774 - L2 LINE L2 -38 3234 2828 1955 139 21 0 chr9 70175670 70175950 -72095494 - AluJo SINE Alu -26 286 1 493 287 216 38 chr9 70175950 70176261 -72095183 - L2 LINE L2 -444 2828 2284 654 203 0 23 chr9 70176825 70176953 -72094491 + FLAM_A SINE Alu 1 125 -17 297 130 58 0 chr9 70177438 70177507 -72093937 + GA-rich Low_complexity Low_complexity 4 76 0 243 62 0 0 chr9 70177761 70177793 -72093651 + Alu SINE Alu 42 73 -230 772 136 0 8 chr9 70177793 70177918 -72093526 + AluSg/x SINE Alu 176 299 -13 804 145 0 0 chr9 70177918 70178035 -72093409 - AluJo/FLAM SINE Alu -185 117 1 21 0 0 0 chr9 70178263 70178284 -72093160 + AT_rich Low_complexity Low_complexity 1 21 0 847 141 7 22 chr9 70178947 70179082 -72092362 + FLAM_C SINE Alu 1 133 0 1011 188 0 11 chr9 70179245 70179421 -72092023 + FAM SINE Alu 2 175 0 2256 115 3 7 chr9 70179899 70180204 -72091240 + AluSq SINE Alu 1 304 -9 2198 105 20 20 chr9 70180213 70180518 -72090926 + AluSx SINE Alu 1 305 -7 388 295 78 7 chr9 70180519 70180790 -72090654 + L1M4 LINE L1 2991 3280 -2866 2133 135 0 3 chr9 70180878 70181182 -72090262 + AluSx SINE Alu 1 303 -9 404 190 35 16 chr9 70181425 70181555 -72089889 - MLT1F LTR MaLR -399 168 3 523 250 122 67 chr9 70181555 70181784 -72089660 + L1M4 LINE L1 3865 4080 -2066 1832 165 3 10 chr9 70181784 70182081 -72089363 + AluJb SINE Alu 3 297 -15 523 250 122 67 chr9 70182081 70182164 -72089280 + L1M4 LINE L1 4080 4157 -1989 2039 162 3 0 chr9 70182164 70182472 -72088972 - AluSx SINE Alu -3 309 1 523 250 122 67 chr9 70182472 70182594 -72088850 + L1M4 LINE L1 4157 4324 -1822 897 245 98 36 chr9 70182627 70182981 -72088463 + MSTD LTR MaLR 1 350 -25 266 226 38 0 chr9 70182987 70183040 -72088404 - MER57A LTR ERV1 -68 335 281 * 314 160 0 0 chr9 70183025 70183075 -72088369 + MSTD LTR MaLR 408 457 0 598 215 16 0 chr9 70183128 70183249 -72088195 + FLAM_A SINE Alu 1 123 -10 494 291 58 21 chr9 70183441 70183630 -72087814 + MLT2F LTR ERVL 4 199 -464 651 273 170 11 chr9 70183639 70183910 -72087534 + MLT2F LTR ERVL 303 616 -47 21 0 0 0 chr9 70184382 70184403 -72087041 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr9 70184998 70185032 -72086412 + AT_rich Low_complexity Low_complexity 1 34 0 235 271 0 0 chr9 70187470 70187529 -72083915 - MIR3 SINE MIR 0 208 150 23 0 0 0 chr9 70188173 70188196 -72083248 + AT_rich Low_complexity Low_complexity 1 23 0 893 94 0 31 chr9 70188197 70188324 -72083120 - FLAM_C SINE Alu -10 123 1 1745 174 4 0 chr9 70188333 70188608 -72082836 - AluJb SINE Alu -23 289 14 1914 163 3 13 chr9 70189725 70190031 -72081413 - AluJo SINE Alu -9 303 1 674 177 0 31 chr9 70190467 70190597 -72080847 + FRAM SINE Alu 21 146 -30 1891 148 7 23 chr9 70190610 70190920 -72080524 - AluJb SINE Alu -6 306 2 2302 100 7 0 chr9 70191403 70191703 -72079741 - AluSp SINE Alu -11 302 1 1798 171 7 0 chr9 70191733 70192025 -72079419 + AluJb SINE Alu 1 294 -18 3089 79 12 7 chr9 70193093 70193511 -72077933 - L1MA1 LINE L1 0 6302 5883 233 349 66 18 chr9 70193977 70194143 -72077301 + L3 LINE CR1 1086 1259 -318 2142 136 0 3 chr9 70194177 70194485 -72076959 - AluSx SINE Alu -5 307 1 904 159 14 101 chr9 70194859 70195066 -72076378 + MER5A DNA MER1_type 1 189 0 230 242 0 32 chr9 70195911 70195973 -72075471 + LTR66 LTR ERVL 402 461 -149 198 0 0 0 chr9 70197484 70197506 -72073938 + (TC)n Simple_repeat Simple_repeat 2 23 0 472 222 169 108 chr9 70198806 70199185 -72072259 + MLT1J LTR MaLR 214 511 0 695 172 35 0 chr9 70200792 70200908 -72070536 + FLAM_C SINE Alu 6 125 -18 296 354 15 0 chr9 70201055 70201185 -72070259 - MIR3 SINE MIR -6 202 71 2336 98 3 19 chr9 70201226 70201562 -72069882 - AluSx SINE Alu 0 331 1 303 324 40 27 chr9 70201622 70201770 -72069674 + MLT1L LTR MaLR 93 242 -373 593 300 189 36 chr9 70202223 70202700 -72068744 - MLT1K LTR MaLR -12 576 27 347 193 0 5 chr9 70203065 70203230 -72068214 + AluJb SINE Alu 1 250 -52 821 172 49 69 chr9 70203230 70203434 -72068010 + AluJo SINE Alu 86 285 -27 255 283 57 47 chr9 70203471 70203577 -72067867 - MER91A DNA MER1_type 0 196 90 * 392 259 31 124 chr9 70203576 70203769 -72067675 - MER91A DNA MER1_type -20 176 2 1142 106 99 0 chr9 70204585 70204746 -72066698 + AluSc SINE Alu 7 183 -126 843 265 102 40 chr9 70206066 70206243 -72065201 - L1MC4 LINE L1 0 8042 7877 2159 138 0 0 chr9 70206243 70206555 -72064889 + AluSq SINE Alu 1 312 -1 843 265 102 40 chr9 70206555 70206985 -72064459 - L1MC4 LINE L1 -165 7877 7295 2443 84 0 0 chr9 70206987 70207284 -72064160 + AluSx SINE Alu 1 297 -15 356 262 43 21 chr9 70207359 70207500 -72063944 - L1MC4 LINE L1 -678 7364 7221 1590 190 3 7 chr9 70208260 70208560 -72062884 + AluJo SINE Alu 3 301 -11 410 227 63 33 chr9 70208585 70208819 -72062625 + MER63A DNA MER1_type 1 210 0 351 290 145 0 chr9 70208922 70209067 -72062377 - L1ME3A LINE L1 -297 5873 5708 606 268 84 3 chr9 70209071 70209355 -72062089 - L1ME3A LINE L1 -512 5658 5352 754 169 57 0 chr9 70209415 70209539 -72061905 + AluJo/FLAM SINE Alu 2 132 -170 2036 138 0 3 chr9 70209541 70209844 -72061600 + AluSp SINE Alu 1 302 0 36 23 0 0 chr9 70209844 70209887 -72061557 + AT_rich Low_complexity Low_complexity 1 43 0 1746 184 7 0 chr9 70210024 70210317 -72061127 + AluJo SINE Alu 3 297 -15 410 318 67 25 chr9 70210765 70211004 -72060440 - MIR SINE MIR -1 261 13 341 283 132 4 chr9 70211824 70212004 -72059440 - MIR SINE MIR -6 256 45 1876 186 0 0 chr9 70212252 70212559 -72058885 + AluJb SINE Alu 1 307 -5 31 0 0 0 chr9 70212618 70212649 -72058795 + AT_rich Low_complexity Low_complexity 1 31 0 304 186 17 0 chr9 70213145 70213204 -72058240 - Charlie1b DNA MER1_type -2 521 462 2236 93 7 0 chr9 70213205 70213515 -72057929 + AluSx SINE Alu 2 313 0 1461 165 9 63 chr9 70213537 70213746 -72057698 - Charlie1b DNA MER1_type -2462 299 80 1616 175 29 29 chr9 70213746 70214054 -72057390 + AluJb SINE Alu 1 308 -4 1461 165 9 63 chr9 70214054 70214120 -72057324 - Charlie1b DNA MER1_type -2681 80 41 210 71 0 0 chr9 70214120 70214148 -72057296 + (CA)n Simple_repeat Simple_repeat 2 29 0 1461 165 9 63 chr9 70214148 70214187 -72057257 - Charlie1b DNA MER1_type -2720 41 1 203 152 65 22 chr9 70214215 70214261 -72057183 + MIR SINE MIR 50 97 -165 1969 149 10 0 chr9 70215098 70215387 -72056057 - AluJo SINE Alu -20 292 1 715 248 58 19 chr9 70215593 70215799 -72055645 - MER102a DNA MER1_type -33 297 84 198 0 0 0 chr9 70216294 70216316 -72055128 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 597 203 0 34 chr9 70216404 70216522 -72054922 + FLAM_C SINE Alu 7 120 -23 27 0 0 0 chr9 70216522 70216549 -72054895 + AT_rich Low_complexity Low_complexity 1 27 0 32 0 0 0 chr9 70216578 70216610 -72054834 + AT_rich Low_complexity Low_complexity 1 32 0 2060 114 42 0 chr9 70216847 70217136 -72054308 + AluSq SINE Alu 10 310 -3 1465 160 0 0 chr9 70217203 70217415 -72054029 + AluJb SINE Alu 89 300 -12 308 158 18 0 chr9 70217548 70217605 -72053839 - Alu SINE Alu -1 300 243 401 169 34 0 chr9 70217979 70218068 -72053376 + L1MB3 LINE L1 6089 6180 -3 22 0 0 0 chr9 70218068 70218090 -72053354 + AT_rich Low_complexity Low_complexity 1 22 0 1689 160 0 63 chr9 70218262 70218580 -72052864 + AluJo SINE Alu 1 298 -14 413 315 81 55 chr9 70218869 70219266 -72052178 + L2 LINE L2 2851 3257 -15 2260 110 7 0 chr9 70219324 70219624 -72051820 + AluSx SINE Alu 1 302 -10 474 164 39 19 chr9 70220283 70220387 -72051057 - MIR3 SINE MIR -39 169 64 247 305 11 21 chr9 70220637 70220732 -72050712 - MER5A DNA MER1_type -22 167 74 2314 75 0 0 chr9 70220739 70221047 -72050397 - AluY SINE Alu 0 308 1 261 0 0 0 chr9 70221393 70221422 -72050022 + (A)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr9 70221753 70221776 -72049668 + AT_rich Low_complexity Low_complexity 1 23 0 1434 188 52 57 chr9 70223059 70223426 -72048018 - MLT1A1 LTR MaLR 0 365 1 840 227 0 0 chr9 70223831 70223985 -72047459 - AluJo SINE Alu -22 290 137 482 266 99 63 chr9 70224030 70224845 -72046599 - L1MC/D LINE L1 -497 5665 4883 504 257 136 14 chr9 70225280 70225494 -72045950 + MIR SINE MIR 23 262 0 770 229 57 22 chr9 70225700 70225927 -72045517 - MER112 DNA MER1_type -6 254 20 321 289 0 25 chr9 70226270 70226391 -72045053 + L2 LINE L2 2257 2374 -940 2840 123 14 21 chr9 70226458 70226888 -72044556 - MSTA LTR MaLR 0 428 2 298 270 140 0 chr9 70227227 70227327 -72044117 + MER117 DNA MER1_type 1 114 -83 930 113 8 15 chr9 70227624 70227757 -72043687 - AluJo SINE Alu -178 134 3 276 356 34 34 chr9 70227793 70227942 -72043502 + L2 LINE L2 3123 3271 -1 2155 68 15 0 chr9 70228000 70228263 -72043181 + AluY SINE Alu 41 307 -4 201 74 0 0 chr9 70229627 70229654 -72041790 + (CA)n Simple_repeat Simple_repeat 1 27 0 204 205 0 0 chr9 70229894 70229933 -72041511 + GA-rich Low_complexity Low_complexity 4 42 0 212 222 0 0 chr9 70230028 70230073 -72041371 - L2 LINE L2 -8 3305 3261 208 294 124 51 chr9 70230524 70230701 -72040743 + MIR SINE MIR 73 262 0 1852 139 0 85 chr9 70231559 70231890 -72039554 - AluJb SINE Alu -9 303 1 597 286 98 5 chr9 70232262 70232465 -72038979 - MIR SINE MIR -11 251 30 995 229 87 80 chr9 70232815 70233217 -72038227 - MLT1I LTR MaLR -4 405 1 270 307 44 0 chr9 70234528 70234642 -72036802 - L2 LINE L2 -310 2962 2844 446 319 14 7 chr9 70235712 70235850 -72035594 - L2 LINE L2 0 3272 3134 1406 164 22 93 chr9 70235945 70236164 -72035280 + AluJo SINE Alu 13 203 -109 2307 116 0 0 chr9 70236164 70236467 -72034977 + AluSx SINE Alu 1 303 -9 1406 164 22 93 chr9 70236467 70236570 -72034874 + AluJo SINE Alu 203 312 0 221 204 0 0 chr9 70236680 70236724 -72034720 + MIR SINE MIR 117 160 -102 229 226 32 16 chr9 70236734 70236796 -72034648 - LTR16A1 LTR ERVL -10 447 385 2383 104 0 0 chr9 70236804 70237111 -72034333 + AluSg SINE Alu 1 307 -3 447 152 0 0 chr9 70237122 70237188 -72034256 + AluSp/q SINE Alu 201 266 -47 269 289 0 0 chr9 70237585 70237661 -72033783 + MIR SINE MIR 187 262 0 312 203 0 0 chr9 70237918 70237982 -72033462 - L1MC4 LINE L1 -1339 6703 6640 869 173 20 0 chr9 70237990 70238176 -72033268 + FRAM SINE Alu 1 182 0 2181 135 0 0 chr9 70238178 70238489 -72032955 + AluSx SINE Alu 1 311 -1 1036 255 68 0 chr9 70238492 70238743 -72032701 + LTR16C LTR ERVL 224 491 0 1821 174 0 16 chr9 70238886 70239191 -72032253 - AluJb SINE Alu -12 300 1 462 280 120 52 chr9 70239192 70239517 -72031927 + L2 LINE L2 2886 3232 -81 814 129 23 15 chr9 70239769 70239901 -72031543 - MER4A LTR ERV1 0 664 532 1140 105 49 0 chr9 70239904 70240066 -72031378 + MSTA LTR MaLR 259 428 0 640 188 79 145 chr9 70240483 70240539 -72030905 - L1MC5 LINE L1 -28 7933 7875 1801 162 3 7 chr9 70240539 70240835 -72030609 + AluJb SINE Alu 1 295 -17 640 188 79 145 chr9 70240835 70241131 -72030313 - L1MC5 LINE L1 -86 7875 7619 3876 105 53 17 chr9 70241131 70241469 -72029975 + MER4B LTR ERV1 1 370 -240 2032 135 3 30 chr9 70241469 70241773 -72029671 + AluSx SINE Alu 1 296 -16 3876 105 53 17 chr9 70241773 70242023 -72029421 + MER4B LTR ERV1 370 610 0 640 188 79 145 chr9 70242023 70242152 -72029292 - L1MC5 LINE L1 -342 7619 7483 662 221 0 21 chr9 70242290 70242435 -72029009 - FLAM_C SINE Alu 0 143 2 413 315 81 55 chr9 70243658 70244055 -72027389 + L2 LINE L2 2851 3257 -15 2318 111 7 0 chr9 70244113 70244420 -72027024 + AluSx SINE Alu 1 309 -3 447 152 0 0 chr9 70244431 70244497 -72026947 + AluSp/q SINE Alu 201 266 -47 269 289 0 0 chr9 70244894 70244970 -72026474 + MIR SINE MIR 187 262 0 995 161 78 139 chr9 70245436 70245662 -72025782 + L1ME1 LINE L1 5808 6046 -288 2127 103 0 0 chr9 70245662 70245933 -72025511 + AluSg SINE Alu 1 271 -39 1198 55 11 27 chr9 70245941 70246124 -72025320 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 995 161 78 139 chr9 70246124 70246279 -72025165 + L1ME1 LINE L1 6053 6331 -3 484 243 44 7 chr9 70247101 70247237 -72024207 + L2 LINE L2 3165 3305 -8 803 157 69 19 chr9 70247712 70247871 -72023573 + FRAM SINE Alu 1 166 -10 2060 120 0 20 chr9 70247873 70248172 -72023272 + AluSq SINE Alu 1 293 -20 511 142 19 9 chr9 70248530 70248636 -72022808 + GA-rich Low_complexity Low_complexity 3 109 0 184 294 0 44 chr9 70249059 70249127 -72022317 + L2 LINE L2 3233 3297 -16 1775 113 8 19 chr9 70249423 70249679 -72021765 - AluJo SINE Alu -18 294 42 272 154 0 0 chr9 70249801 70249840 -72021604 - AluJo SINE Alu -263 39 1 742 167 0 8 chr9 70250703 70250817 -72020627 + AluJo/FLAM SINE Alu 3 116 -181 1901 152 0 3 chr9 70250817 70251107 -72020337 + AluSx SINE Alu 21 309 -3 4296 118 24 86 chr9 70251316 70252153 -72019291 + LTR1 LTR ERV1 1 785 0 598 154 34 193 chr9 70252321 70252554 -72018890 + MER21B LTR ERV1 53 248 -615 935 218 158 71 chr9 70252582 70252684 -72018760 + MER21B LTR ERV1 413 505 -358 1930 99 0 27 chr9 70252684 70252946 -72018498 - AluSq SINE Alu -54 259 5 935 218 158 71 chr9 70252946 70253083 -72018361 + MER21B LTR ERV1 505 629 -234 2125 148 0 0 chr9 70253083 70253393 -72018051 + AluJb SINE Alu 1 310 -2 935 218 158 71 chr9 70253393 70253627 -72017817 + MER21B LTR ERV1 629 862 -1 283 243 0 27 chr9 70253708 70253782 -72017662 - L2 LINE L2 -3 3269 3198 252 167 0 0 chr9 70254525 70254573 -72016871 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 348 141 39 4 chr9 70254839 70254909 -72016535 + FLAM_A SINE Alu 80 128 -5 226 273 182 0 chr9 70254928 70255027 -72016417 - L2 LINE L2 -5 3267 3151 * 386 327 85 35 chr9 70255009 70255269 -72016175 + L2 LINE L2 944 1216 -2098 441 312 112 16 chr9 70255280 70255530 -72015914 + L2 LINE L2 2373 2646 -668 302 336 41 25 chr9 70255612 70255734 -72015710 + LTR16C LTR ERVL 43 166 -325 190 203 14 14 chr9 70256517 70256586 -72014858 + (TTCA)n Simple_repeat Simple_repeat 1 69 0 196 275 0 0 chr9 70256659 70256699 -72014745 + L2 LINE L2 2440 2479 -835 5048 153 40 16 chr9 70256833 70257663 -72013781 - MER21B LTR ERV1 -13 850 1 2196 113 116 38 chr9 70258304 70258524 -72012920 - MSTA LTR MaLR 0 428 227 2246 119 0 0 chr9 70258524 70258819 -72012625 - AluSx SINE Alu -17 295 1 2196 113 116 38 chr9 70258819 70258995 -72012449 - MSTA LTR MaLR -201 227 1 229 248 114 34 chr9 70259102 70259251 -72012193 + MER104 DNA Tc2 4 164 -16 2342 178 48 14 chr9 70259344 70259828 -72011616 - MLT1D LTR MaLR -3 502 3 2355 87 3 0 chr9 70260567 70260855 -72010589 + AluSq SINE Alu 1 289 -24 945 189 117 1 chr9 70260945 70261259 -72010185 - MLT1D LTR MaLR -2 503 127 760 192 0 0 chr9 70261260 70261385 -72010059 + FLAM_C SINE Alu 3 127 -16 1902 154 3 0 chr9 70261389 70261682 -72009762 + AluSx SINE Alu 1 294 -18 524 229 37 0 chr9 70261696 70261805 -72009639 - MLT1D LTR MaLR -387 118 6 226 264 0 42 chr9 70261805 70261877 -72009567 + L2 LINE L2 3187 3255 -17 558 204 171 0 chr9 70261901 70262053 -72009391 + MER5A DNA MER1_type 12 189 0 23 33 0 0 chr9 70262076 70262106 -72009338 + AT_rich Low_complexity Low_complexity 1 30 0 1537 88 200 8 chr9 70262410 70262660 -72008784 + AluSx SINE Alu 5 302 0 475 280 0 13 chr9 70262662 70262812 -72008632 + LTR16C LTR ERVL 344 491 0 463 307 51 23 chr9 70262812 70263027 -72008417 - MIR SINE MIR -22 240 20 1602 269 47 30 chr9 70263399 70264188 -72007256 - L2 LINE L2 -260 3053 2254 2131 130 16 0 chr9 70264188 70264495 -72006949 + AluSx SINE Alu 1 312 0 278 50 25 0 chr9 70264498 70264538 -72006906 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 643 225 0 0 chr9 70264602 70264722 -72006722 - AluJo SINE Alu -46 266 147 289 267 50 25 chr9 70264741 70264846 -72006598 - L2 LINE L2 -1105 2209 2097 2271 101 3 10 chr9 70264846 70265154 -72006290 + AluSq SINE Alu 1 306 -7 289 267 50 25 chr9 70265154 70265209 -72006235 - L2 LINE L2 -1217 2097 2045 347 128 77 0 chr9 70265224 70265302 -72006142 + L2 LINE L2 2005 2088 -1226 213 250 0 31 chr9 70265303 70265367 -72006077 - L2 LINE L2 -1368 1946 1885 289 305 43 24 chr9 70266192 70266356 -72005088 + MIR SINE MIR 58 224 -38 262 268 93 21 chr9 70266448 70266545 -72004899 + L2 LINE L2 3168 3271 -1 396 361 42 5 chr9 70266549 70266740 -72004704 + MIR SINE MIR 59 256 -6 469 312 13 6 chr9 70267093 70267250 -72004194 + MER117 DNA MER1_type 3 160 -37 468 244 70 0 chr9 70267565 70267680 -72003764 - L2 LINE L2 -7 3306 3184 381 224 172 9 chr9 70268452 70268568 -72002876 - MLT1K LTR MaLR 0 588 454 639 261 97 46 chr9 70268645 70268840 -72002604 - MLT1K LTR MaLR -292 296 92 890 284 152 35 chr9 70269599 70270061 -72001383 + MLT1H LTR MaLR 7 522 -27 256 261 0 15 chr9 70270396 70270461 -72000983 + GA-rich Low_complexity Low_complexity 1 64 0 2259 122 3 0 chr9 70271991 70272295 -71999149 - AluSp SINE Alu -8 305 1 26 0 0 0 chr9 70272405 70272431 -71999013 + AT_rich Low_complexity Low_complexity 1 26 0 208 216 16 152 chr9 70272494 70272619 -71998825 + MIR SINE MIR 49 156 -106 751 258 62 93 chr9 70272659 70273144 -71998300 - L2 LINE L2 -2 3311 2842 218 98 39 39 chr9 70274644 70274695 -71996749 + GA-rich Low_complexity Low_complexity 1 51 0 719 243 131 0 chr9 70275224 70275446 -71995998 - MIR SINE MIR -11 251 1 641 168 8 24 chr9 70276508 70276633 -71994811 - AluJo SINE Alu -141 171 49 243 230 58 11 chr9 70276870 70276957 -71994487 + MER113 DNA MER1_type? 6 96 -425 310 240 83 21 chr9 70277154 70277250 -71994194 - MIR SINE MIR -138 124 23 2258 116 0 0 chr9 70277946 70278249 -71993195 - AluSg SINE Alu -7 303 1 508 265 78 86 chr9 70278267 70278641 -71992803 + L2 LINE L2 2872 3242 -71 392 240 29 10 chr9 70278768 70278872 -71992572 + MIR SINE MIR 17 122 -140 189 0 0 0 chr9 70279735 70279756 -71991688 + (A)n Simple_repeat Simple_repeat 1 21 0 828 203 43 21 chr9 70280236 70280423 -71991021 - MER20 DNA MER1_type 0 219 29 722 189 18 35 chr9 70280529 70280698 -71990746 + FRAM SINE Alu 11 176 0 658 296 70 38 chr9 70280894 70281483 -71989961 - L2 LINE L2 0 3313 2704 240 111 0 0 chr9 70281511 70281547 -71989897 + (TG)n Simple_repeat Simple_repeat 2 37 0 360 0 0 0 chr9 70281609 70281649 -71989795 + (TG)n Simple_repeat Simple_repeat 2 41 0 2827 209 64 16 chr9 70282029 70282717 -71988727 + MER20B DNA MER1_type 63 783 0 2127 188 52 56 chr9 70282851 70283387 -71988057 + L1MD3 LINE L1 7460 7993 -2 225 0 0 0 chr9 70283483 70283508 -71987936 + (CA)n Simple_repeat Simple_repeat 2 26 0 500 247 26 32 chr9 70283842 70283996 -71987448 - MIR SINE MIR 0 262 110 285 217 14 0 chr9 70284012 70284081 -71987363 - MER116 DNA Mariner -4 76 7 753 245 19 33 chr9 70284227 70284439 -71987005 - MIR SINE MIR -33 229 21 202 268 0 0 chr9 70284672 70284728 -71986716 + GA-rich Low_complexity Low_complexity 4 59 0 2377 90 0 13 chr9 70285008 70285318 -71986126 + AluSx SINE Alu 1 306 -6 231 361 0 0 chr9 70285560 70285643 -71985801 + A-rich Low_complexity Low_complexity 1 83 0 199 299 15 0 chr9 70286215 70286282 -71985162 - MIR3 SINE MIR -30 178 111 1909 113 65 51 chr9 70286702 70287072 -71984372 + THE1C LTR MaLR 1 375 0 419 246 193 12 chr9 70287382 70287553 -71983891 + MIR SINE MIR 56 257 -5 672 262 18 50 chr9 70289509 70289649 -71981795 + MIR SINE MIR 7 139 -123 1462 173 49 52 chr9 70289649 70289955 -71981489 + AluJo SINE Alu 1 305 -7 672 262 18 50 chr9 70289955 70290035 -71981409 + MIR SINE MIR 139 220 -42 253 297 251 11 chr9 70290048 70290223 -71981221 - MIR SINE MIR -24 238 22 2167 112 0 17 chr9 70291500 70291817 -71979627 - AluSx SINE Alu 0 312 1 1168 186 30 66 chr9 70291817 70292118 -71979326 - L1MA9 LINE L1 -58 6254 5965 189 74 0 0 chr9 70292788 70292815 -71978629 + (TG)n Simple_repeat Simple_repeat 1 27 0 1005 166 0 6 chr9 70293136 70293293 -71978151 - AluJo SINE Alu -155 157 2 487 277 34 0 chr9 70293312 70293460 -71977984 + MIR SINE MIR 38 190 -72 22 0 0 0 chr9 70294171 70294193 -71977251 + AT_rich Low_complexity Low_complexity 1 22 0 524 61 50 55 chr9 70294587 70294768 -71976676 + (TA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chr9 70294933 70294957 -71976487 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1770 183 3 7 chr9 70294959 70295244 -71976200 - AluJb SINE Alu -28 284 1 1790 202 17 6 chr9 70295546 70295907 -71975537 + MLT1A1 LTR MaLR 1 365 0 185 91 0 30 chr9 70296418 70296451 -71974993 + (TC)n Simple_repeat Simple_repeat 1 32 0 2096 125 0 14 chr9 70296665 70296962 -71974482 + AluSx SINE Alu 8 300 -12 2881 225 20 15 chr9 70296984 70297643 -71973801 + Charlie1a DNA MER1_type 1 662 -793 639 118 274 0 chr9 70297779 70297914 -71973530 + Charlie1a DNA MER1_type 724 895 -560 836 195 0 0 chr9 70297915 70298074 -71973370 - FAM SINE Alu 0 49 1 2038 203 56 40 chr9 70298084 70298652 -71972792 + Charlie1a DNA MER1_type 879 1455 0 2482 88 0 0 chr9 70300903 70301210 -71970234 + AluSq SINE Alu 1 307 -6 208 253 44 55 chr9 70301476 70301567 -71969877 - L2 LINE L2 -3 3269 3180 21 0 0 0 chr9 70301698 70301719 -71969725 + AT_rich Low_complexity Low_complexity 1 21 0 253 309 121 27 chr9 70301818 70301967 -71969477 - MER5A DNA MER1_type -10 179 17 294 29 0 0 chr9 70302591 70302626 -71968818 + (TG)n Simple_repeat Simple_repeat 2 36 0 473 276 0 8 chr9 70302834 70302961 -71968483 - L2 LINE L2 -1 3312 3187 845 219 5 47 chr9 70302979 70303194 -71968250 - MER3 DNA MER1_type -2 207 2 777 145 0 0 chr9 70304463 70304580 -71966864 - FRAM SINE Alu -22 154 38 273 364 93 19 chr9 70304632 70305359 -71966085 + L2 LINE L2 332 1196 -2118 239 338 31 12 chr9 70305561 70305721 -71965723 + L2 LINE L2 1825 1987 -1327 412 273 114 37 chr9 70305737 70306034 -71965410 + L2 LINE L2 2151 2470 -844 2018 174 0 0 chr9 70306302 70306619 -71964825 - 7SLRNA srpRNA srpRNA -2 318 2 346 293 123 71 chr9 70307758 70308182 -71963262 + L2 LINE L2 2867 3312 -1 454 138 32 21 chr9 70308836 70308930 -71962514 + L1PB2 LINE L1 6054 6148 -3 397 269 28 35 chr9 70309437 70309578 -71961866 + MIR SINE MIR 72 211 -51 2144 114 10 0 chr9 70310176 70310482 -71960962 - AluSx SINE Alu -3 309 1 245 219 110 12 chr9 70311324 70311406 -71960038 - HAL1 LINE L1 -1175 1332 1243 311 263 114 18 chr9 70311457 70311571 -71959873 - HAL1 LINE L1 -1 2506 2382 335 293 3 59 chr9 70311592 70311778 -71959666 + MLT1H LTR MaLR 3 226 -323 3269 270 133 41 chr9 70311798 70313345 -71958099 - HAL1 LINE L1 -665 1842 153 453 263 45 8 chr9 70313348 70313481 -71957963 - MLT1J1 LTR MaLR -288 158 21 702 257 6 11 chr9 70313714 70313893 -71957551 + MIR SINE MIR 21 198 -64 2718 29 0 3 chr9 70313915 70314227 -71957217 + AluY SINE Alu 1 311 0 192 313 0 31 chr9 70314679 70314743 -71956701 + MIR3 SINE MIR 1 62 -146 904 195 43 0 chr9 70315263 70315427 -71956017 - AluJb SINE Alu 0 312 142 314 229 59 42 chr9 70315564 70315682 -71955762 - L1M3b LINE L1 -6161 120 1 391 278 35 17 chr9 70315891 70316006 -71955438 + MIR SINE MIR 34 150 -58 2041 110 0 72 chr9 70316493 70316811 -71954633 + AluSg SINE Alu 5 299 -11 24 24 0 24 chr9 70317393 70317406 -71954038 + AT_rich Low_complexity Low_complexity 1 13 -28 1700 169 3 36 chr9 70317406 70317707 -71953737 - AluJo SINE Alu -20 292 2 24 24 0 24 chr9 70317707 70317735 -71953709 + AT_rich Low_complexity Low_complexity 13 41 0 930 147 0 0 chr9 70317933 70318076 -71953368 - AluSp/q SINE Alu -3 310 168 211 263 105 26 chr9 70318254 70318368 -71953076 - L2 LINE L2 -1005 2309 2187 383 307 47 0 chr9 70318503 70318630 -71952814 - MIR SINE MIR -35 227 95 210 37 0 0 chr9 70319618 70319645 -71951799 + (A)n Simple_repeat Simple_repeat 1 27 0 1338 225 36 36 chr9 70319648 70320004 -71951440 + LTR49-int LTR ERV1 1845 2200 -4131 4554 114 1 26 chr9 70320012 70320629 -71950815 + LTR49-int LTR ERV1 195 797 -5961 2295 74 3 7 chr9 70320629 70320914 -71950530 - AluY SINE Alu -16 295 12 4554 114 1 26 chr9 70320914 70320951 -71950493 + LTR49-int LTR ERV1 797 833 -5925 375 296 51 0 chr9 70321988 70322086 -71949358 + L2 LINE L2 3169 3271 -1 517 279 60 37 chr9 70322196 70322411 -71949033 - MIR SINE MIR -7 255 36 645 322 29 0 chr9 70322770 70322975 -71948469 - MIR SINE MIR -3 259 49 753 212 34 68 chr9 70323225 70323489 -71947955 + MER112 DNA MER1_type 2 256 0 820 193 31 19 chr9 70324153 70324314 -71947130 + AluJb SINE Alu 150 312 0 613 147 0 194 chr9 70324510 70324721 -71946723 - MER53 DNA DNA -18 171 2 222 337 161 37 chr9 70325107 70325517 -71945927 + L2 LINE L2 2811 3271 -1 9026 92 56 24 chr9 70327318 70328745 -71942699 - MER4-int LTR ERV1 -1290 5308 3836 4161 130 76 31 chr9 70328743 70329648 -71941796 - MER4-int LTR ERV1 -2917 3681 2736 * 574 100 12 0 chr9 70329650 70329730 -71941714 + LTR8 LTR ERV1 5 85 -606 276 312 72 0 chr9 70330938 70331063 -71940381 + MLT1K LTR MaLR 438 571 -17 2139 119 0 13 chr9 70331182 70331493 -71939951 - AluSg1 SINE Alu -2 307 1 307 86 122 0 chr9 70332299 70332438 -71939006 + (TA)n Simple_repeat Simple_repeat 1 156 0 244 317 0 0 chr9 70332444 70332504 -71938940 + MIR SINE MIR 13 72 -190 338 234 283 7 chr9 70332615 70332760 -71938684 + MIR SINE MIR 78 262 0 862 223 47 51 chr9 70333794 70334009 -71937435 + MER20 DNA MER1_type 1 214 -5 388 313 11 34 chr9 70334535 70334714 -71936730 - MIR SINE MIR 0 262 88 1823 128 67 0 chr9 70334912 70335194 -71936250 + AluSx SINE Alu 1 301 -11 248 289 0 0 chr9 70335422 70335541 -71935903 + C-rich Low_complexity Low_complexity 1 119 0 780 249 12 0 chr9 70335618 70335791 -71935653 + MER5A DNA MER1_type 9 183 -6 775 164 94 53 chr9 70335890 70336061 -71935383 - MER5B DNA MER1_type 0 178 1 212 346 59 26 chr9 70336258 70336411 -71935033 + MIR SINE MIR 74 231 -31 949 180 24 0 chr9 70336812 70336979 -71934465 + MER3 DNA MER1_type 10 180 -29 478 273 162 0 chr9 70337233 70337387 -71934057 - MER5A DNA MER1_type 0 189 11 482 195 18 104 chr9 70337405 70337569 -71933875 + MER20 DNA MER1_type 1 150 -69 384 136 0 0 chr9 70337569 70337635 -71933809 + L1MA4 LINE L1 6227 6292 -8 339 211 92 0 chr9 70337690 70337766 -71933678 + MER20 DNA MER1_type 134 216 -3 194 61 0 30 chr9 70338830 70338863 -71932581 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 183 42 0 0 chr9 70339979 70340003 -71931441 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 212 121 0 0 chr9 70340161 70340194 -71931250 - MIR SINE MIR -113 149 117 1487 193 7 128 chr9 70340194 70340521 -71930923 - MLT1A1 LTR MaLR 0 365 97 478 88 0 29 chr9 70340521 70340615 -71930829 - L1PA8 LINE L1 0 6172 6096 1487 193 7 128 chr9 70340615 70340702 -71930742 - MLT1A1 LTR MaLR -268 97 1 24 0 0 0 chr9 70341007 70341031 -71930413 + AT_rich Low_complexity Low_complexity 1 24 0 1142 165 71 9 chr9 70341308 70341520 -71929924 + MER4A LTR ERV1 438 662 -2 8540 200 30 5 chr9 70341523 70343389 -71928055 + L1 LINE L1 3345 5256 -890 1969 118 17 3 chr9 70343564 70343852 -71927592 + AluSx SINE Alu 15 306 -6 2273 98 3 7 chr9 70344333 70344638 -71926806 - AluSq SINE Alu -1 312 9 336 284 52 17 chr9 70345201 70345317 -71926127 + MIR3 SINE MIR 86 205 -3 22 0 0 0 chr9 70346370 70346392 -71925052 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 70347118 70347146 -71924298 + AT_rich Low_complexity Low_complexity 1 28 0 2075 132 0 0 chr9 70349743 70350032 -71921412 + AluSx SINE Alu 1 289 -23 209 319 84 38 chr9 70350051 70350289 -71921155 + L2 LINE L2 2411 2659 -655 355 285 296 0 chr9 70350322 70350493 -71920951 + MIR SINE MIR 16 236 -26 2784 110 51 5 chr9 70351011 70351420 -71920024 - MSTA LTR MaLR 0 428 1 589 306 26 44 chr9 70351521 70351750 -71919694 - MIR SINE MIR -32 230 6 412 237 91 75 chr9 70351740 70351799 -71919645 - L2 LINE L2 -622 2692 2635 * 2262 101 14 0 chr9 70351799 70352096 -71919348 - AluSx SINE Alu -11 301 1 412 237 91 75 chr9 70352096 70352222 -71919222 - L2 LINE L2 -679 2635 2504 268 336 0 49 chr9 70353832 70353954 -71917490 - L2 LINE L2 -6 3266 3151 224 324 20 39 chr9 70353958 70354060 -71917384 + MIR SINE MIR 6 105 -157 482 276 80 49 chr9 70354109 70354334 -71917110 + MIR SINE MIR 19 250 -12 401 358 48 22 chr9 70354620 70354849 -71916595 - MIR SINE MIR -6 256 22 2469 53 0 0 chr9 70355251 70355536 -71915908 + AluY SINE Alu 6 290 -21 284 367 0 0 chr9 70355689 70355787 -71915657 - MIR3 SINE MIR -23 185 88 557 271 53 39 chr9 70357635 70357916 -71913528 + L1ME4a LINE L1 5634 5918 -203 209 83 28 0 chr9 70357987 70358023 -71913421 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1124 50 0 7 chr9 70358023 70358163 -71913281 - MER107 DNA MER1_type -52 145 7 304 235 54 87 chr9 70358168 70358317 -71913127 + L1ME4a LINE L1 5978 6121 0 241 0 103 0 chr9 70359452 70359491 -71911953 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 676 279 126 6 chr9 70360414 70360780 -71910664 - L1MEc LINE L1 -4194 2202 1793 1552 108 44 8 chr9 70361473 70361722 -71909722 + L1PB2 LINE L1 5892 6149 -2 617 253 29 18 chr9 70362025 70362195 -71909249 + L2 LINE L2 3125 3296 -17 1654 131 117 4 chr9 70362939 70363213 -71908231 + AluJb SINE Alu 7 311 -1 842 158 0 33 chr9 70363218 70363402 -71908042 + GA-rich Low_complexity Low_complexity 2 179 0 342 45 0 0 chr9 70363408 70363452 -71907992 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 562 273 66 11 chr9 70363601 70363804 -71907640 + L1P4 LINE L1 5617 5833 -330 416 269 6 0 chr9 70363829 70364004 -71907440 + (TA)n Simple_repeat Simple_repeat 1 176 0 409 282 136 37 chr9 70364095 70364321 -71907123 + L1M4 LINE L1 2910 3179 -2967 1753 187 0 3 chr9 70364321 70364610 -71906834 + AluJo SINE Alu 1 288 -24 409 282 136 37 chr9 70364610 70364706 -71906738 + L1M4 LINE L1 3179 3264 -2882 283 262 157 12 chr9 70365117 70365289 -71906155 + L1M4 LINE L1 3611 3807 -2339 32 57 0 0 chr9 70365447 70365500 -71905944 + AT_rich Low_complexity Low_complexity 1 53 0 207 0 0 0 chr9 70366388 70366411 -71905033 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2071 127 0 0 chr9 70366414 70366697 -71904747 - AluSx SINE Alu -29 283 1 189 358 124 7 chr9 70368239 70368376 -71903068 - MIR SINE MIR -33 229 77 210 37 0 0 chr9 70369456 70369483 -71901961 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 29 0 0 chr9 70370228 70370262 -71901182 + AT_rich Low_complexity Low_complexity 1 34 0 715 150 0 0 chr9 70370262 70370375 -71901069 - FLAM_C SINE Alu -24 119 7 252 0 0 0 chr9 70371101 70371129 -71900315 + (CA)n Simple_repeat Simple_repeat 2 29 0 234 103 69 23 chr9 70371569 70371656 -71899788 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 196 277 184 21 chr9 70371660 70371699 -71899745 + MIR SINE MIR 69 100 -162 1861 163 0 10 chr9 70371699 70372005 -71899439 - AluJo SINE Alu -9 303 1 196 277 184 21 chr9 70372005 70372106 -71899338 + MIR SINE MIR 100 232 -30 239 211 42 70 chr9 70372205 70372276 -71899168 + MIR3 SINE MIR 118 186 -22 22 0 0 0 chr9 70372348 70372370 -71899074 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr9 70372931 70372954 -71898490 + AT_rich Low_complexity Low_complexity 1 23 0 466 246 129 65 chr9 70374158 70374467 -71896977 + L1ME4a LINE L1 5791 6119 -2 389 335 87 12 chr9 70374709 70374870 -71896574 + MIR SINE MIR 20 192 -70 1027 186 59 0 chr9 70375090 70375311 -71896133 - L1MB1 LINE L1 -9 6159 5926 3091 280 106 19 chr9 70375407 70376657 -71894787 + L2 LINE L2 1728 3082 -231 280 291 101 0 chr9 70376647 70376726 -71894718 - L2 LINE L2 -29 3284 3198 * 565 290 103 30 chr9 70376707 70376969 -71894475 + L2 LINE L2 3031 3311 -2 459 324 56 9 chr9 70378152 70378365 -71893079 + MIR SINE MIR 3 225 -37 489 314 149 18 chr9 70378451 70378839 -71892605 - L2 LINE L2 0 3313 2875 269 284 78 26 chr9 70379584 70379700 -71891744 + MIR SINE MIR 72 193 -69 853 172 7 7 chr9 70380205 70380350 -71891094 + MER5B DNA MER1_type 34 178 0 5002 37 0 7 chr9 70380620 70381219 -71890225 + L1PA5 LINE L1 5560 6154 0 233 258 11 67 chr9 70383373 70383462 -71887982 - L2 LINE L2 -2 3270 3187 330 224 137 63 chr9 70383524 70383630 -71887814 + MIR SINE MIR 34 164 -98 496 234 47 8 chr9 70383630 70383758 -71887686 + MER94 DNA DNA 2 134 0 330 224 137 63 chr9 70383758 70383799 -71887645 + MIR SINE MIR 164 201 -61 993 158 11 5 chr9 70384167 70384357 -71887087 + L1PBa LINE L1 4 194 -6669 10048 162 38 12 chr9 70384357 70385872 -71885572 + L1PBa LINE L1 996 2470 -4392 207 69 0 0 chr9 70385872 70385901 -71885543 + (CAA)n Simple_repeat Simple_repeat 2 30 0 10048 162 38 12 chr9 70385901 70386733 -71884711 + L1PBa LINE L1 2470 3279 -3583 828 20 0 0 chr9 70386733 70386832 -71884612 + L1PA3 LINE L1 6056 6154 -1 10048 162 38 12 chr9 70386832 70388006 -71883438 + L1PBa LINE L1 3279 4815 -2047 1837 139 3 78 chr9 70388006 70388338 -71883106 - AluSx SINE Alu -5 307 1 10048 162 38 12 chr9 70388338 70388789 -71882655 + L1PBa LINE L1 4815 5253 -1609 327 228 17 29 chr9 70388889 70389137 -71882307 + CT-rich Low_complexity Low_complexity 1 244 0 1789 135 79 22 chr9 70392533 70392851 -71878593 + MER1A DNA MER1_type 1 336 -193 24 67 0 0 chr9 70393098 70393143 -71878301 + AT_rich Low_complexity Low_complexity 1 45 0 216 0 0 0 chr9 70393237 70393261 -71878183 + (TTA)n Simple_repeat Simple_repeat 2 25 0 234 313 25 80 chr9 70393544 70393707 -71877737 + L2 LINE L2 3160 3313 0 191 111 0 28 chr9 70394753 70394789 -71876655 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 1246 130 6 0 chr9 70395334 70395503 -71875941 - AluSg/x SINE Alu -18 294 125 217 360 0 23 chr9 70395556 70395642 -71875802 + L2 LINE L2 3181 3264 -8 2060 116 0 64 chr9 70396649 70396978 -71874466 + AluSq SINE Alu 1 308 -5 237 83 0 0 chr9 70397144 70397180 -71874264 + MADE1 DNA Mariner 1 36 -44 297 100 0 0 chr9 70398232 70398282 -71873162 + (T)n Simple_repeat Simple_repeat 1 50 0 588 225 93 6 chr9 70398296 70398478 -71872966 - L1ME3A LINE L1 -10 6160 5963 1961 22 0 0 chr9 70398479 70398710 -71872734 - L1PA2 LINE L1 0 6155 5925 339 355 0 1 chr9 70399111 70399220 -71872224 + MIR SINE MIR 36 143 -65 494 320 52 16 chr9 70399692 70399886 -71871558 - MIR SINE MIR 0 262 62 535 122 0 24 chr9 70400293 70400375 -71871069 - AluJ/FLAM SINE Alu -228 84 5 422 134 158 6 chr9 70400870 70400974 -71870470 - L1MA7 LINE L1 0 6291 6186 572 140 0 0 chr9 70401004 70401104 -71870340 + L1PA16 LINE L1 6067 6166 0 221 333 151 30 chr9 70401104 70401541 -71869903 - L2 LINE L2 -238 3034 2550 285 301 96 14 chr9 70401567 70401713 -71869731 - MIR SINE MIR -52 210 53 425 195 0 0 chr9 70401785 70401862 -71869582 - AluJ/FLAM SINE Alu -235 77 1 657 275 54 98 chr9 70402489 70403028 -71868416 + MLT1H1 LTR MaLR 43 557 -33 292 232 43 0 chr9 70403102 70403171 -71868273 + L2 LINE L2 3201 3272 0 744 279 71 21 chr9 70403473 70403713 -71867731 - MIR SINE MIR -3 259 8 1884 155 7 10 chr9 70404883 70405192 -71866252 - AluSx SINE Alu -4 308 1 352 272 48 0 chr9 70405370 70405473 -71865971 + MIR SINE MIR 79 186 -76 612 231 134 41 chr9 70405546 70405815 -71865629 + MER113 DNA MER1_type? 226 519 -2 577 332 72 36 chr9 70406312 70406858 -71864586 + L2 LINE L2 2704 3271 -1 1702 167 32 4 chr9 70406992 70407273 -71864171 - AluJb SINE Alu -23 289 1 498 235 12 6 chr9 70409481 70409619 -71861825 - MIR SINE MIR -10 252 115 25037 87 12 4 chr9 70410522 70414325 -71857119 - L1PA7 LINE L1 -4 6150 2382 272 48 24 0 chr9 70414325 70414367 -71857077 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 25037 87 12 4 chr9 70414367 70414834 -71856610 - L1PA7 LINE L1 -3772 2382 1834 2406 74 14 0 chr9 70414834 70415131 -71856313 + AluSp SINE Alu 1 301 -12 25037 87 12 4 chr9 70415131 70415366 -71856078 - L1PA7 LINE L1 -4320 1834 1603 210 270 190 44 chr9 70415521 70415658 -71855786 - MIR SINE MIR -98 164 8 185 320 8 64 chr9 70417036 70417161 -71854283 + L2 LINE L2 1242 1359 -1955 570 314 109 25 chr9 70417167 70417292 -71854152 - L1M4 LINE L1 -870 5276 5163 1933 170 3 31 chr9 70417292 70417377 -71854067 - MER7A DNA MER2_type -2692 346 260 2139 108 20 10 chr9 70417377 70417673 -71853771 - AluSx SINE Alu -13 299 1 1933 170 3 31 chr9 70417673 70417945 -71853499 - MER7A DNA MER2_type -2778 260 1 570 314 109 25 chr9 70417945 70418417 -71853027 - L1M4 LINE L1 -983 5163 4629 459 0 0 0 chr9 70418450 70418501 -71852943 + (CA)n Simple_repeat Simple_repeat 1 51 0 315 296 43 41 chr9 70419010 70419355 -71852089 - L1M4 LINE L1 -3597 2549 2204 1313 181 69 69 chr9 70421318 70421621 -71849823 + AluJo SINE Alu 3 305 -7 2034 187 17 0 chr9 70421668 70422027 -71849417 - MLT1A1 LTR MaLR 0 365 1 930 214 33 14 chr9 70422725 70422935 -71848509 - MER58C DNA MER1_type 0 215 2 5740 140 16 18 chr9 70423310 70424920 -71846524 + L1PB1 LINE L1 4541 6150 -1 32 26 0 0 chr9 70424974 70425013 -71846431 + AT_rich Low_complexity Low_complexity 1 39 0 328 211 58 10 chr9 70425054 70425158 -71846286 + L1ME4a LINE L1 5838 5946 -175 1632 115 58 11 chr9 70425242 70425520 -71845924 - L1MA5A LINE L1 -3 6294 6004 182 302 8 78 chr9 70425610 70425739 -71845705 + MIR SINE MIR 79 198 -64 200 361 69 0 chr9 70425921 70426051 -71845393 - L2 LINE L2 -214 3058 2920 31 26 0 0 chr9 70426764 70426802 -71844642 + AT_rich Low_complexity Low_complexity 1 38 0 2242 106 13 10 chr9 70426988 70427300 -71844144 + AluSq SINE Alu 1 313 0 377 296 74 11 chr9 70427816 70427992 -71843452 + MIR SINE MIR 20 206 -56 637 273 129 5 chr9 70428043 70428252 -71843192 - MIR SINE MIR -1 261 27 210 267 12 58 chr9 70428932 70429018 -71842426 - MIR SINE MIR -10 252 171 225 0 0 0 chr9 70429206 70429231 -71842213 + (GA)n Simple_repeat Simple_repeat 2 26 0 185 297 218 20 chr9 70429703 70429804 -71841640 - MIR SINE MIR -109 153 33 180 111 0 0 chr9 70429998 70430025 -71841419 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 206 209 0 0 chr9 70432247 70432290 -71839154 - MIR SINE MIR -10 252 210 213 65 0 0 chr9 70432691 70432722 -71838722 + (TG)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr9 70433651 70433674 -71837770 + (CAA)n Simple_repeat Simple_repeat 2 24 0 411 307 72 18 chr9 70433688 70433854 -71837590 - MER5A DNA MER1_type -2 187 13 321 189 0 0 chr9 70434576 70434629 -71836815 - MER5A DNA MER1_type -3 186 134 1354 110 42 8 chr9 70434633 70434870 -71836574 + L1MA8 LINE L1 6037 6281 -10 604 231 31 0 chr9 70434920 70435050 -71836394 - MER5A DNA MER1_type -54 135 2 480 261 33 17 chr9 70436126 70436137 -71835307 + MER117 DNA MER1_type 5 14 -183 2343 144 44 33 chr9 70436137 70436566 -71834878 - Tigger2a DNA MER2_type 0 434 1 480 261 33 17 chr9 70436566 70436734 -71834710 + MER117 DNA MER1_type 14 187 -10 619 271 179 5 chr9 70437262 70437480 -71833964 - MIR SINE MIR -6 256 1 1936 133 7 23 chr9 70438082 70438382 -71833062 + AluJb SINE Alu 1 295 -17 567 200 139 0 chr9 70438383 70438548 -71832896 + MER3 DNA MER1_type 18 205 -4 246 218 36 0 chr9 70438509 70438564 -71832880 - MER3 DNA MER1_type -119 90 34 * 788 219 22 70 chr9 70438675 70438903 -71832541 - L2 LINE L2 0 3313 3097 347 97 0 16 chr9 70439171 70439233 -71832211 + (GA)n Simple_repeat Simple_repeat 2 62 0 542 201 89 56 chr9 70439318 70439532 -71831912 - MER58 DNA MER1_type 0 2420 2200 403 223 108 14 chr9 70439520 70439668 -71831776 - MER58 DNA MER1_type -153 188 27 * 1696 181 10 13 chr9 70439719 70440017 -71831427 + AluJb SINE Alu 1 297 -15 407 176 11 0 chr9 70440017 70440108 -71831336 + (TA)n Simple_repeat Simple_repeat 1 92 0 1508 196 99 0 chr9 70440262 70440594 -71830850 + MER47A DNA MER2_type 2 366 0 1617 212 40 0 chr9 70441425 70441750 -71829694 - MER2 DNA MER2_type 0 345 8 226 288 68 0 chr9 70441796 70441869 -71829575 + MIR SINE MIR 155 232 -30 1958 151 0 13 chr9 70443393 70443691 -71827753 + AluJo SINE Alu 1 294 -18 1937 169 0 0 chr9 70444597 70444899 -71826545 - AluJb SINE Alu -8 304 3 603 300 77 21 chr9 70446923 70447011 -71824433 - MIR SINE MIR -15 247 165 2176 133 67 40 chr9 70447011 70447432 -71824012 + Tigger2a DNA MER2_type 2 433 -1 603 300 77 21 chr9 70447432 70447576 -71823868 - MIR SINE MIR -97 165 2 410 276 15 37 chr9 70447592 70447726 -71823718 + MER94 DNA DNA 4 134 0 947 204 11 27 chr9 70448477 70448663 -71822781 - MER5A DNA MER1_type -1 188 6 1045 214 18 18 chr9 70448825 70449049 -71822395 - MER58A DNA MER1_type 0 224 1 237 33 0 0 chr9 70449580 70449610 -71821834 + (A)n Simple_repeat Simple_repeat 1 30 0 438 192 0 58 chr9 70449761 70449865 -71821579 + L2 LINE L2 1927 2024 -1290 305 183 0 0 chr9 70449872 70449932 -71821512 + MER34C LTR ERV1 37 96 -489 2379 72 10 7 chr9 70449989 70450296 -71821148 - AluY SINE Alu -3 308 1 713 225 142 74 chr9 70450337 70450595 -71820849 + MER34B LTR ERV1 77 316 -249 1746 143 47 11 chr9 70450595 70450910 -71820534 + AluSx SINE Alu 1 312 0 713 225 142 74 chr9 70450910 70451109 -71820335 + MER34B LTR ERV1 316 565 0 403 287 8 8 chr9 70451114 70451243 -71820201 + L2 LINE L2 2034 2162 -1152 297 329 71 6 chr9 70451272 70451442 -71820002 + L2 LINE L2 3044 3224 -89 224 221 26 39 chr9 70451715 70451792 -71819652 + G-rich Low_complexity Low_complexity 6 81 0 228 100 0 0 chr9 70451792 70451832 -71819612 + (GA)n Simple_repeat Simple_repeat 1 40 0 2105 44 4 0 chr9 70451860 70452109 -71819335 + AluY SINE Alu 61 310 -1 2076 104 7 0 chr9 70452958 70453279 -71818165 + AluSg SINE Alu 1 310 0 319 319 35 35 chr9 70454138 70454254 -71817190 - L2 LINE L2 -21 3251 3136 649 185 0 0 chr9 70455444 70455552 -71815892 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 4031 112 58 21 chr9 70455543 70456266 -71815178 + Tigger3(Golem) DNA MER2_type 2278 3027 -2 183 295 103 13 chr9 70457101 70457179 -71814265 + L2 LINE L2 3186 3270 -2 591 299 46 14 chr9 70457262 70457479 -71813965 + MIR SINE MIR 20 243 -19 309 300 0 0 chr9 70458061 70458151 -71813293 + MIR SINE MIR 173 262 0 208 328 35 70 chr9 70459538 70459709 -71811735 + MIR3 SINE MIR 2 166 -42 2479 157 35 20 chr9 70459768 70460220 -71811224 + L1PA16 LINE L1 5707 6165 -1 559 248 233 0 chr9 70460263 70460473 -71810971 + MIR SINE MIR 4 262 0 317 152 30 0 chr9 70461391 70461457 -71809987 + CT-rich Low_complexity Low_complexity 4 71 0 23 68 0 0 chr9 70461632 70461676 -71809768 + AT_rich Low_complexity Low_complexity 1 44 0 527 310 81 10 chr9 70461776 70462147 -71809297 - L1ME LINE L1 -296 5825 5389 310 295 9 18 chr9 70462148 70462260 -71809184 - L1ME LINE L1 -2444 5364 5254 232 304 0 0 chr9 70463584 70463640 -71807804 + MER117 DNA MER1_type 7 62 -135 * 860 312 110 14 chr9 70463638 70464083 -71807361 + MLT1J LTR MaLR 20 507 -4 30 83 0 0 chr9 70464363 70464435 -71807009 + AT_rich Low_complexity Low_complexity 1 72 0 245 335 171 0 chr9 70465292 70465444 -71806000 + L3b LINE CR1 1247 1424 -159 409 237 135 51 chr9 70465684 70465840 -71805604 - MER20B DNA MER1_type -21 198 29 189 74 0 0 chr9 70466920 70466947 -71804497 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 611 145 0 65 chr9 70466949 70467073 -71804371 - AluSq/x SINE Alu -197 116 1 363 202 106 10 chr9 70467272 70467376 -71804068 - MIR SINE MIR -69 193 80 511 206 22 29 chr9 70467783 70467919 -71803525 + L1MC5 LINE L1 7724 7858 -103 26 64 0 0 chr9 70467931 70467978 -71803466 + AT_rich Low_complexity Low_complexity 1 47 0 203 277 0 0 chr9 70468039 70468086 -71803358 - L2 LINE L2 -12 3301 3255 29 0 0 0 chr9 70468116 70468145 -71803299 + AT_rich Low_complexity Low_complexity 1 29 0 203 200 0 77 chr9 70468162 70468227 -71803217 + MIR SINE MIR 71 130 -132 975 309 115 3 chr9 70468340 70468731 -71802713 + L2 LINE L2 1071 1505 -1809 205 282 64 55 chr9 70468765 70468875 -71802569 + L2 LINE L2 2099 2209 -1105 231 259 49 37 chr9 70468908 70468989 -71802455 + L2 LINE L2 2458 2539 -775 1471 157 0 43 chr9 70468991 70469291 -71802153 + L1MB3 LINE L1 5897 6183 0 333 0 0 0 chr9 70469304 70469341 -71802103 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 107 0 0 chr9 70469683 70469711 -71801733 + (CA)n Simple_repeat Simple_repeat 1 28 0 635 249 22 28 chr9 70469712 70469893 -71801551 + L2 LINE L2 2543 2722 -592 481 277 110 71 chr9 70469974 70470339 -71801105 + L2 LINE L2 2935 3313 0 2458 79 0 0 chr9 70470966 70471269 -71800175 - AluSg SINE Alu -7 303 1 521 205 27 9 chr9 70471634 70471746 -71799698 + MER81 DNA DNA 1 114 0 202 292 88 71 chr9 70472368 70472481 -71798963 - MER91A DNA MER1_type -36 160 46 23 0 0 0 chr9 70475244 70475267 -71796177 + AT_rich Low_complexity Low_complexity 1 23 0 448 322 99 35 chr9 70475289 70475490 -71795954 - MIR SINE MIR -48 214 4 222 220 0 0 chr9 70475894 70475944 -71795500 + L2 LINE L2 3264 3313 0 419 304 220 0 chr9 70477243 70477411 -71794033 + MIR SINE MIR 52 256 -6 21 36 0 0 chr9 70477820 70477848 -71793596 + AT_rich Low_complexity Low_complexity 1 28 0 938 216 21 0 chr9 70478024 70478218 -71793226 + MER105 DNA DNA 6 203 -1 1574 92 67 0 chr9 70478280 70478502 -71792942 + L1MA1 LINE L1 6037 6278 -24 318 26 0 0 chr9 70478502 70478541 -71792903 + (TA)n Simple_repeat Simple_repeat 2 40 0 1574 92 67 0 chr9 70478541 70478558 -71792886 + L1MA1 LINE L1 6278 6292 -10 2317 11 0 0 chr9 70478582 70478847 -71792597 + L1PA3 LINE L1 5889 6153 -2 255 317 37 0 chr9 70479333 70479415 -71792029 + MIR SINE MIR 18 102 -106 258 286 0 14 chr9 70480000 70480070 -71791374 - MIR SINE MIR -7 255 187 1636 207 154 25 chr9 70481041 70481425 -71790019 + MLT1F1 LTR MaLR 69 518 -49 2322 176 42 2 chr9 70481425 70481835 -71789609 + MSTB LTR MaLR 1 426 0 1636 207 154 25 chr9 70481835 70481890 -71789554 + MLT1F1 LTR MaLR 518 565 -2 489 279 76 13 chr9 70482154 70482312 -71789132 + MIR SINE MIR 54 221 -41 344 321 208 5 chr9 70482381 70482593 -71788851 + MIR SINE MIR 8 262 0 1024 333 105 15 chr9 70482723 70483514 -71787930 + L2 LINE L2 1531 2392 -922 1015 168 16 28 chr9 70484783 70485083 -71786361 + MLT1A1 LTR MaLR 5 365 0 183 286 24 24 chr9 70485148 70485232 -71786212 - L2 LINE L2 -217 3055 2972 254 274 16 0 chr9 70485767 70485829 -71785615 - L2 LINE L2 -9 3263 3201 268 311 0 10 chr9 70487135 70487238 -71784206 + GA-rich Low_complexity Low_complexity 2 103 0 736 148 4 0 chr9 70488032 70488164 -71783280 + L1ME LINE L1 5653 5785 -381 382 45 0 60 chr9 70488167 70488234 -71783210 + (TA)n Simple_repeat Simple_repeat 1 63 0 1867 164 47 0 chr9 70488267 70488608 -71782836 + L1PB4 LINE L1 5782 6138 -18 243 0 0 0 chr9 70490972 70490999 -71780445 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2256 105 0 0 chr9 70491787 70492082 -71779362 - AluSq SINE Alu -18 295 1 1185 298 84 52 chr9 70494126 70495206 -71776238 + L1MEd LINE L1 304 1313 -4818 262 336 77 0 chr9 70496208 70496351 -71775093 + MIR SINE MIR 49 202 -60 26 0 0 0 chr9 70496458 70496484 -71774960 + AT_rich Low_complexity Low_complexity 1 26 0 199 308 122 66 chr9 70497078 70497364 -71774080 - L2 LINE L2 -337 2977 2676 697 272 116 28 chr9 70497995 70498315 -71773129 - L2 LINE L2 -88 3225 2878 810 189 19 13 chr9 70498432 70498591 -71772853 + MER58B DNA MER1_type 181 340 -1 21 0 0 0 chr9 70499885 70499906 -71771538 + AT_rich Low_complexity Low_complexity 1 21 0 521 299 111 4 chr9 70499913 70500157 -71771287 - L1ME4a LINE L1 -219 5902 5633 22 35 0 0 chr9 70502846 70502875 -71768569 + AT_rich Low_complexity Low_complexity 1 29 0 520 274 171 0 chr9 70503714 70503860 -71767584 + MIR SINE MIR 2 172 -90 236 333 135 0 chr9 70503869 70504010 -71767434 - MIR SINE MIR -48 214 55 458 243 0 10 chr9 70504144 70504247 -71767197 - MIR SINE MIR -77 185 84 252 260 73 21 chr9 70506470 70506566 -71764878 - MIR3 SINE MIR -33 175 75 422 202 198 20 chr9 70506632 70506775 -71764669 - MER5A DNA MER1_type -6 183 6 283 260 80 30 chr9 70510954 70511054 -71760390 + MIR3 SINE MIR 15 119 -89 422 291 8 24 chr9 70511065 70511192 -71760252 + MER5B DNA MER1_type 2 126 -52 1030 226 106 0 chr9 70512037 70512254 -71759190 + MER45C DNA AcHobo 1 240 -713 506 358 75 18 chr9 70512251 70512477 -71758967 + MER45C DNA AcHobo 362 600 -353 * 318 250 0 0 chr9 70512495 70512551 -71758893 + MER45C DNA AcHobo 898 953 0 280 366 93 0 chr9 70512725 70512897 -71758547 + MIR SINE MIR 75 262 0 413 333 136 14 chr9 70513449 70513662 -71757782 - MIR SINE MIR -10 252 14 683 266 68 5 chr9 70513740 70513947 -71757497 - MIR SINE MIR -36 226 7 292 345 122 25 chr9 70514156 70514353 -71757091 - MIR SINE MIR -27 235 20 295 248 112 48 chr9 70514557 70514682 -71756762 - MARNA DNA Mariner -366 220 88 217 237 13 53 chr9 70515256 70515332 -71756112 + GA-rich Low_complexity Low_complexity 2 74 0 276 336 94 0 chr9 70516022 70516171 -71755273 - MIR SINE MIR -86 176 14 227 258 30 0 chr9 70517120 70517186 -71754258 - MIR SINE MIR -119 143 76 261 119 0 0 chr9 70517840 70517882 -71753562 + (A)n Simple_repeat Simple_repeat 1 42 0 752 171 63 44 chr9 70519816 70519974 -71751470 + FRAM SINE Alu 1 161 -5 850 146 8 0 chr9 70520164 70520287 -71751157 + FLAM_C SINE Alu 3 126 -17 24 0 0 0 chr9 70520287 70520311 -71751133 + AT_rich Low_complexity Low_complexity 1 24 0 217 296 74 68 chr9 70520330 70520492 -71750952 + L2 LINE L2 3151 3313 0 25 0 0 0 chr9 70521218 70521243 -71750201 + AT_rich Low_complexity Low_complexity 1 25 0 1899 262 69 24 chr9 70522200 70522898 -71748546 + L1ME3A LINE L1 5354 6106 -64 480 294 164 9 chr9 70522968 70523055 -71748389 - MIR SINE MIR -14 248 176 273 57 0 0 chr9 70523055 70523090 -71748354 + (TTA)n Simple_repeat Simple_repeat 2 36 0 480 294 164 9 chr9 70523090 70523216 -71748228 - MIR SINE MIR -86 176 2 820 176 0 0 chr9 70523236 70523367 -71748077 + FRAM SINE Alu 22 152 -24 235 299 94 24 chr9 70523963 70524090 -71747354 - MIR SINE MIR -7 255 120 205 304 0 43 chr9 70524107 70524176 -71747268 - L2 LINE L2 -1 3312 3247 417 180 40 40 chr9 70524371 70524471 -71746973 - MER5B DNA MER1_type 0 178 79 201 232 29 29 chr9 70525016 70525085 -71746359 + GA-rich Low_complexity Low_complexity 5 73 0 2020 129 0 35 chr9 70525436 70525753 -71745691 + AluSx SINE Alu 1 306 -6 281 325 0 25 chr9 70526598 70526678 -71744766 - MER5A DNA MER1_type 0 189 112 344 237 75 11 chr9 70526766 70526859 -71744585 - MIR SINE MIR -147 115 17 1942 188 37 36 chr9 70527906 70528460 -71742984 - MLT2A2 LTR ERVL 0 554 1 602 295 121 63 chr9 70528641 70529055 -71742389 + L2 LINE L2 2875 3312 -1 479 315 11 11 chr9 70529198 70529379 -71742065 + MIR SINE MIR 52 232 -30 2464 61 0 19 chr9 70530531 70530844 -71740600 - AluY SINE Alu 0 311 5 348 370 29 16 chr9 70530966 70531212 -71740232 - L2 LINE L2 -1193 2121 1873 22 35 0 0 chr9 70531945 70531974 -71739470 + AT_rich Low_complexity Low_complexity 1 29 0 200 255 124 62 chr9 70532101 70532246 -71739198 - MIR3 SINE MIR -6 202 49 22 0 0 0 chr9 70534870 70534892 -71736552 + AT_rich Low_complexity Low_complexity 1 22 0 251 256 318 16 chr9 70534896 70535025 -71736419 - MIR SINE MIR -75 187 20 1702 329 123 26 chr9 70535510 70536782 -71734662 + L2 LINE L2 1404 2799 -515 449 283 17 25 chr9 70537039 70537159 -71734285 + L2 LINE L2 3134 3252 -20 270 143 0 0 chr9 70537165 70537214 -71734230 + (CAGG)n Simple_repeat Simple_repeat 2 50 0 27 0 0 0 chr9 70538615 70538642 -71732802 + AT_rich Low_complexity Low_complexity 1 27 0 223 274 32 0 chr9 70539239 70539301 -71732143 - MIR SINE MIR -3 259 196 236 182 55 18 chr9 70539503 70539558 -71731886 + MIR SINE MIR 127 183 -79 35 0 0 0 chr9 70539988 70540023 -71731421 + AT_rich Low_complexity Low_complexity 1 35 0 2222 108 3 0 chr9 70540023 70540318 -71731126 + AluSx SINE Alu 6 301 -11 421 290 6 68 chr9 70541241 70541417 -71730027 - MIR SINE MIR -78 184 20 210 71 0 0 chr9 70544581 70544609 -71726835 + (TTCTCC)n Simple_repeat Simple_repeat 4 31 0 582 290 112 14 chr9 70544849 70545135 -71726309 + L1ME4a LINE L1 5515 5828 -293 916 186 24 52 chr9 70545273 70545483 -71725961 - MER20 DNA MER1_type -15 204 1 396 204 0 75 chr9 70545506 70545599 -71725845 + L1MC4 LINE L1 6618 6703 -1339 432 200 0 0 chr9 70545599 70545689 -71725755 + (TATG)n Simple_repeat Simple_repeat 2 91 0 234 0 0 0 chr9 70545689 70545715 -71725729 + (GA)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chr9 70545714 70545734 -71725710 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 329 215 13 0 chr9 70545991 70546070 -71725374 + L1ME4a LINE L1 6039 6118 -3 234 0 0 0 chr9 70547203 70547229 -71724215 + (CA)n Simple_repeat Simple_repeat 2 27 0 187 271 57 29 chr9 70547810 70547880 -71723564 - L2 LINE L2 0 3313 3242 225 191 128 96 chr9 70547925 70548019 -71723425 - MER5C DNA MER1_type 0 324 228 516 156 104 0 chr9 70548050 70548146 -71723298 - MER5C DNA MER1_type -203 121 16 393 242 0 21 chr9 70548155 70548250 -71723194 + MER5A DNA MER1_type 10 102 -87 612 256 37 21 chr9 70548376 70548567 -71722877 - MIR SINE MIR -10 252 59 247 340 19 10 chr9 70548963 70549066 -71722378 + L2 LINE L2 3169 3272 0 335 139 14 0 chr9 70550483 70550555 -71720889 - L1MA4 LINE L1 -2 6298 6226 243 222 33 78 chr9 70553145 70553235 -71718209 - MIR SINE MIR -132 130 45 234 318 30 38 chr9 70554232 70554364 -71717080 - MER5A DNA MER1_type -28 161 31 192 285 83 62 chr9 70554235 70554379 -71717065 + MER5A DNA MER1_type 43 189 0 * 1079 153 36 54 chr9 70554588 70554811 -71716633 - MER20 DNA MER1_type 0 219 1 2251 127 0 0 chr9 70556053 70556360 -71715084 - AluSq SINE Alu -4 309 3 360 0 0 0 chr9 70557760 70557800 -71713644 + (TG)n Simple_repeat Simple_repeat 2 41 0 1075 261 53 143 chr9 70558232 70559234 -71712210 + HAL1 LINE L1 2 913 -1594 320 117 28 61 chr9 70559317 70559497 -71711947 + (TA)n Simple_repeat Simple_repeat 1 174 0 590 255 137 32 chr9 70559508 70560318 -71711126 + HAL1 LINE L1 950 1876 -631 1615 41 0 0 chr9 70560379 70560574 -71710870 + L1PA5 LINE L1 5953 6147 -7 198 352 158 15 chr9 70561618 70561814 -71709630 - MIR SINE MIR -1 261 38 364 208 0 14 chr9 70562165 70562237 -71709207 + L2 LINE L2 3235 3305 -8 33 0 0 0 chr9 70564218 70564251 -71707193 + AT_rich Low_complexity Low_complexity 1 33 0 436 313 87 15 chr9 70564832 70565034 -71706410 + MIR SINE MIR 26 243 -19 365 269 55 55 chr9 70565156 70565357 -71706087 - HAL1 LINE L1 -1 2506 2306 220 301 157 0 chr9 70566556 70566639 -71704805 - L2 LINE L2 -43 3229 3134 2365 100 0 0 chr9 70567053 70567352 -71704092 - AluSq SINE Alu -14 299 1 4509 186 30 6 chr9 70568000 70569323 -71702121 - L1 LINE L1 -2919 4646 3286 326 298 34 58 chr9 70569876 70570081 -71701363 - L1ME LINE L1 -539 5582 5383 10539 114 40 10 chr9 70570317 70571249 -71700195 - L1M1 LINE L1 -4277 3288 2281 2297 82 0 26 chr9 70571249 70571555 -71699889 + AluY SINE Alu 1 298 -13 10539 114 40 10 chr9 70571555 70572278 -71699166 - L1M1 LINE L1 -5284 2281 1582 1464 161 31 105 chr9 70572428 70572820 -71698624 - MLT1A1 LTR MaLR 0 365 3 473 282 24 0 chr9 70573865 70574025 -71697419 + L1MA10 LINE L1 5994 6318 -7 650 353 62 42 chr9 70575005 70575597 -71695847 - L2 LINE L2 -675 2639 2036 396 232 0 20 chr9 70576027 70576126 -71695318 + MIR SINE MIR 145 241 -21 2188 266 68 31 chr9 70576335 70577010 -71694434 - L1ME3A LINE L1 -35 6135 5424 435 113 127 0 chr9 70577010 70577081 -71694363 + MADE1 DNA Mariner 1 80 0 2188 266 68 31 chr9 70577081 70577210 -71694234 - L1ME3A LINE L1 -746 5424 5301 1058 276 68 8 chr9 70577683 70578168 -71693276 - L1ME3A LINE L1 -935 5211 4698 531 254 14 0 chr9 70578198 70578340 -71693104 - L1ME3A LINE L1 -1538 4608 4465 2756 191 30 71 chr9 70578548 70578770 -71692674 + MER82 DNA MER2_type 2 231 -422 3042 161 4 4 chr9 70578770 70579292 -71692152 + L1PA16 LINE L1 5628 6149 -17 2756 191 30 71 chr9 70579292 70579735 -71691709 + MER82 DNA MER2_type 231 640 -13 2189 122 0 0 chr9 70579921 70580232 -71691212 - AluSq SINE Alu -2 311 1 1239 204 82 7 chr9 70580832 70581112 -71690332 + AluJo SINE Alu 2 302 -10 29 60 0 0 chr9 70581310 70581360 -71690084 + AT_rich Low_complexity Low_complexity 1 50 0 449 206 31 0 chr9 70581492 70581589 -71689855 + MER103 DNA DNA 19 118 -48 1711 169 3 3 chr9 70582606 70582890 -71688554 - AluJb SINE Alu -6 306 23 26 0 0 0 chr9 70582890 70582916 -71688528 + AT_rich Low_complexity Low_complexity 1 26 0 242 228 88 0 chr9 70584108 70584165 -71687279 + L2 LINE L2 3172 3233 -39 26 30 0 0 chr9 70586329 70586362 -71685082 + AT_rich Low_complexity Low_complexity 1 33 0 1050 103 0 0 chr9 70586488 70586633 -71684811 - AluSg/x SINE Alu -3 309 165 188 250 0 0 chr9 70586793 70586829 -71684615 + L3 LINE CR1 1535 1570 -7 280 348 78 0 chr9 70586990 70587131 -71684313 - L2 LINE L2 0 3313 3162 2335 110 0 0 chr9 70588079 70588388 -71683056 - AluSg SINE Alu -1 309 1 2107 143 0 0 chr9 70588859 70589159 -71682285 - AluSx SINE Alu -12 300 1 197 358 62 0 chr9 70590030 70590111 -71681333 - L2 LINE L2 -38 3234 3149 274 340 44 29 chr9 70590208 70590414 -71681030 - L2 LINE L2 -397 2917 2709 458 338 5 72 chr9 70592960 70593182 -71678262 - MIR SINE MIR -26 236 30 198 0 0 0 chr9 70593814 70593836 -71677608 + (T)n Simple_repeat Simple_repeat 1 22 0 1489 185 7 11 chr9 70594121 70594397 -71677047 + AluJo SINE Alu 1 275 -37 517 260 100 0 chr9 70594907 70595057 -71676387 + MER63A DNA MER1_type 18 182 -28 3606 160 45 78 chr9 70595969 70596831 -71674613 - L1MB7 LINE L1 0 6184 5351 635 255 153 0 chr9 70597469 70597685 -71673759 - MER46C DNA MER2_type -43 295 47 409 337 74 6 chr9 70598420 70598595 -71672849 - MIR SINE MIR -56 206 20 248 250 0 0 chr9 70598688 70598736 -71672708 + MIR SINE MIR 47 94 -168 216 0 0 0 chr9 70598848 70598872 -71672572 + (TA)n Simple_repeat Simple_repeat 1 24 0 492 266 130 6 chr9 70598872 70599041 -71672403 - MIR SINE MIR -68 194 5 23 0 0 0 chr9 70599093 70599116 -71672328 + AT_rich Low_complexity Low_complexity 1 23 0 313 133 0 0 chr9 70599138 70599198 -71672246 - L1MC3 LINE L1 -161 7624 7565 1945 112 0 7 chr9 70599198 70599485 -71671959 - L1PA7 LINE L1 -8 6146 5862 2718 82 0 0 chr9 70599486 70599851 -71671593 - L1PA7 LINE L1 -875 5271 4907 240 264 104 19 chr9 70600639 70600745 -71670699 + MIR SINE MIR 84 198 -64 29 28 0 0 chr9 70601206 70601242 -71670202 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr9 70601651 70601681 -71669763 + AT_rich Low_complexity Low_complexity 1 30 0 5960 100 16 30 chr9 70601727 70602774 -71668670 - L1PA13 LINE L1 -5 6158 5103 1904 161 0 37 chr9 70602774 70603123 -71668321 + L1P LINE L1 3591 3926 -2220 26 0 0 0 chr9 70603487 70603513 -71667931 + AT_rich Low_complexity Low_complexity 1 26 0 239 341 130 16 chr9 70604303 70604426 -71667018 - L2 LINE L2 0 3272 3136 221 308 23 83 chr9 70604850 70604983 -71666461 + MIR SINE MIR 2 126 -136 627 279 27 47 chr9 70604987 70605288 -71666156 - L1ME3A LINE L1 -5 6165 5871 1270 132 112 37 chr9 70605842 70606084 -71665360 + Tigger7 DNA MER2_type 2232 2491 0 346 339 91 0 chr9 70606087 70606252 -71665192 - MIR SINE MIR -70 192 13 199 324 20 54 chr9 70606825 70606973 -71664471 - L2 LINE L2 -13 3300 3158 2428 167 63 8 chr9 70607196 70607669 -71663775 - MLT1D LTR MaLR -2 503 5 4884 34 7 0 chr9 70609460 70610042 -71661402 - L1PA3 LINE L1 0 6155 5570 1848 9 0 5 chr9 70610042 70610251 -71661193 + L1PA3 LINE L1 5352 5559 -596 207 0 0 0 chr9 70610718 70610741 -71660703 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2310 112 0 10 chr9 70611363 70611677 -71659767 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr9 70611683 70611704 -71659740 + AT_rich Low_complexity Low_complexity 1 21 0 1280 152 8 0 chr9 70711708 70734710 -71536734 - ALR/Alpha Satellite centromeric 0 23189 1 780 242 94 33 chr9 70835413 70835657 -71435787 + MIR SINE MIR 2 260 -2 184 262 97 68 chr9 70835658 70835761 -71435683 + MIR SINE MIR 34 139 -123 2325 85 0 0 chr9 70835933 70836238 -71435206 - AluY SINE Alu -6 305 1 3003 229 68 12 chr9 70836265 70837015 -71434429 - MER21B LTR ERV1 -60 803 12 199 159 23 0 chr9 70838077 70838121 -71433323 - L2 LINE L2 0 3313 3269 1340 206 63 38 chr9 70838485 70838850 -71432594 - MLT1A2 LTR MaLR 0 374 1 351 0 0 0 chr9 70838872 70838911 -71432533 + (CA)n Simple_repeat Simple_repeat 1 39 0 189 107 0 0 chr9 70839178 70839206 -71432238 + (GA)n Simple_repeat Simple_repeat 2 29 0 393 320 121 43 chr9 70839690 70839874 -71431570 + L2 LINE L2 1610 1778 -1536 2084 132 0 0 chr9 70839874 70840170 -71431274 - AluSg SINE Alu -14 296 1 393 320 121 43 chr9 70840170 70840497 -71430947 + L2 LINE L2 1778 2161 -1153 210 343 40 0 chr9 70840535 70840634 -71430810 + L2 LINE L2 2271 2373 -941 2154 217 75 0 chr9 70840664 70841184 -71430260 - MER89 LTR ERV1 0 559 1 262 366 72 7 chr9 70841224 70841377 -71430067 + MIR SINE MIR 2 164 -98 1039 217 22 16 chr9 70841781 70842059 -71429385 + MLT1D LTR MaLR 196 503 -2 274 314 25 8 chr9 70842622 70842743 -71428701 + MLT1L LTR MaLR 489 611 -4 344 285 56 76 chr9 70842812 70842956 -71428488 - L2 LINE L2 -9 3263 3123 837 179 4 93 chr9 70843067 70843249 -71428195 + MER97b DNA MER1_type? 76 232 -821 1483 176 28 38 chr9 70843249 70843539 -71427905 + AluJo SINE Alu 1 287 -25 837 179 4 93 chr9 70843539 70843602 -71427842 + MER97b DNA MER1_type? 232 299 -754 302 336 26 0 chr9 70843711 70843827 -71427617 - MIR SINE MIR -91 171 53 732 201 6 35 chr9 70844055 70844229 -71427215 + MER3 DNA MER1_type 1 122 -87 392 20 0 0 chr9 70844719 70844769 -71426675 + MADE1 DNA Mariner 31 80 0 35 41 0 0 chr9 70844994 70845043 -71426401 + AT_rich Low_complexity Low_complexity 1 49 0 242 306 194 19 chr9 70845446 70845554 -71425890 + MIR SINE MIR 17 143 -119 1634 214 85 64 chr9 70845707 70846316 -71425128 + MLT1E3 LTR MaLR 3 624 0 609 262 59 39 chr9 70847076 70847332 -71424112 - MIR SINE MIR 0 262 2 272 333 38 90 chr9 70848220 70848337 -71423107 + L2 LINE L2 2596 2717 -555 1704 194 70 25 chr9 70848337 70848822 -71422622 + Charlie4a DNA MER1_type 2 508 0 272 333 38 90 chr9 70848822 70849194 -71422250 + L2 LINE L2 2717 3064 -208 437 208 132 0 chr9 70849595 70849701 -71421743 - L2 LINE L2 -3 3310 3191 1016 184 5 15 chr9 70849703 70849904 -71421540 + MER3 DNA MER1_type 1 199 -10 1804 303 96 18 chr9 70850048 70850897 -71420547 - L2 LINE L2 -254 3059 2144 632 109 0 0 chr9 70850898 70850990 -71420454 + AluSg/x SINE Alu 218 309 0 262 287 147 78 chr9 70851296 70851425 -71420019 + MIR SINE MIR 38 175 -33 195 317 0 79 chr9 70851473 70851574 -71419870 - MIR SINE MIR -157 105 13 21 0 0 0 chr9 70851658 70851679 -71419765 + AT_rich Low_complexity Low_complexity 1 21 0 226 319 143 0 chr9 70852849 70852968 -71418476 + L2 LINE L2 3136 3271 -1 2257 88 10 0 chr9 70854046 70854340 -71417104 - AluY SINE Alu -14 297 1 358 238 93 13 chr9 70854919 70855068 -71416376 - L1MCa LINE L1 -1339 6983 1995 301 273 0 11 chr9 70855040 70855128 -71416316 - L1MCa LINE L1 -4363 2063 1977 * 1505 185 62 9 chr9 70855181 70855506 -71415938 - L1MC1 LINE L1 0 6727 6386 450 306 94 38 chr9 70858883 70859118 -71412326 + L2 LINE L2 2810 3057 -215 531 266 72 65 chr9 70859586 70860018 -71411426 - L1MC4 LINE L1 -137 7905 7471 1917 219 31 18 chr9 70860057 70860565 -71410879 - L1MC1 LINE L1 -1932 6270 5756 3220 244 32 50 chr9 70861335 70861972 -71409472 + L1MA6 LINE L1 2081 2728 -4837 2063 127 10 0 chr9 70861972 70862263 -71409181 + AluSp SINE Alu 1 294 -19 3220 244 32 50 chr9 70862263 70863433 -71408011 + L1MA6 LINE L1 2728 3781 -3784 2492 62 0 7 chr9 70863433 70863742 -71407702 + AluY SINE Alu 1 307 -4 1329 98 0 0 chr9 70863745 70863918 -71407526 + AluSp SINE Alu 141 313 0 12117 163 26 30 chr9 70863953 70865412 -71406032 + L1MA6 LINE L1 3795 5258 -2461 2171 123 0 7 chr9 70865412 70865720 -71405724 + AluSx SINE Alu 1 306 -6 12117 163 26 30 chr9 70865720 70867236 -71404208 + L1MA6 LINE L1 5258 6778 -941 183 42 0 0 chr9 70867236 70867260 -71404184 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 12117 163 26 30 chr9 70867260 70867764 -71403680 + L1MA6 LINE L1 6778 7244 -475 384 22 0 0 chr9 70867764 70867809 -71403635 + (CA)n Simple_repeat Simple_repeat 2 46 0 12117 163 26 30 chr9 70867809 70868284 -71403160 + L1MA6 LINE L1 7244 7719 0 27 0 0 0 chr9 70868288 70868315 -71403129 + AT_rich Low_complexity Low_complexity 1 27 0 371 306 93 69 chr9 70868351 70868618 -71402826 - L1MC1 LINE L1 -816 5724 5465 1855 170 3 10 chr9 70868618 70868930 -71402514 - AluJb SINE Alu -2 310 1 371 306 93 69 chr9 70868930 70870984 -71400460 - L1MC1 LINE L1 -1075 5465 3327 315 337 24 16 chr9 70871473 70871732 -71399712 - L1MC1 LINE L1 -3784 2756 2491 1689 88 5 0 chr9 70872762 70872977 -71398467 + AluSc SINE Alu 1 216 -93 3508 154 62 16 chr9 70873063 70873076 -71398368 - L1MB3 LINE L1 -9 6174 6163 281 26 26 0 chr9 70873076 70873114 -71398330 + (TG)n Simple_repeat Simple_repeat 2 40 0 3508 154 62 16 chr9 70873114 70873807 -71397637 - L1MB3 LINE L1 -20 6163 5435 2026 262 89 34 chr9 70874090 70877049 -71394395 + L1ME3A LINE L1 2153 5418 -821 1595 159 10 45 chr9 70877049 70877338 -71394106 + AluJo SINE Alu 21 299 -13 2026 262 89 34 chr9 70877338 70878200 -71393244 + L1ME3A LINE L1 5418 6231 -8 307 272 73 63 chr9 70878694 70878885 -71392559 + HAL1 LINE L1 2254 2446 -61 4825 202 33 47 chr9 70878889 70879257 -71392187 + L1MD2 LINE L1 4644 5016 -1343 1584 198 3 13 chr9 70879257 70879560 -71391884 + AluJo SINE Alu 1 300 -12 4825 202 33 47 chr9 70879560 70879595 -71391849 + L1MD2 LINE L1 5016 5050 -1309 730 62 0 0 chr9 70879595 70879691 -71391753 + L1PA8 LINE L1 6075 6170 -2 4825 202 33 47 chr9 70879691 70881017 -71390427 + L1MD2 LINE L1 5050 6337 -22 581 264 111 28 chr9 70881360 70881576 -71389868 + MIR SINE MIR 4 237 -25 769 137 0 40 chr9 70882483 70882607 -71388837 + MER4-int LTR ERV1 290 408 -6190 12878 201 53 8 chr9 70882616 70886042 -71385402 + L1PA13 LINE L1 1 3630 -3167 23 0 0 0 chr9 70887053 70887076 -71384368 + AT_rich Low_complexity Low_complexity 1 23 0 2100 117 0 20 chr9 70887129 70887429 -71384015 + AluSq SINE Alu 3 296 -17 24 32 0 0 chr9 70887481 70887512 -71383932 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr9 70887953 70887981 -71383463 + AT_rich Low_complexity Low_complexity 1 28 0 324 241 116 54 chr9 70888037 70888149 -71383295 - L2 LINE L2 0 3272 3154 192 398 78 8 chr9 70888227 70888355 -71383089 + MIR SINE MIR 100 236 -26 21 36 0 0 chr9 70888438 70888466 -71382978 + AT_rich Low_complexity Low_complexity 1 28 0 765 43 73 0 chr9 70888791 70888955 -71382489 + (TA)n Simple_repeat Simple_repeat 2 177 0 243 0 101 29 chr9 70888986 70889055 -71382389 + (TA)n Simple_repeat Simple_repeat 1 74 0 4784 172 26 2 chr9 70890161 70891006 -71380438 - MER6 DNA MER2_type 0 865 1 757 234 27 32 chr9 70891436 70891624 -71379820 - MER63A DNA MER1_type 0 210 24 204 158 0 0 chr9 70891679 70891717 -71379727 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1973 132 7 3 chr9 70892284 70892602 -71378842 + AluSx SINE Alu 7 312 0 180 0 0 0 chr9 70892827 70892847 -71378597 + (T)n Simple_repeat Simple_repeat 1 20 0 269 321 21 64 chr9 70895082 70895222 -71376222 - MIR3 SINE MIR -15 193 60 355 276 18 37 chr9 70895300 70895463 -71375981 + CT-rich Low_complexity Low_complexity 1 160 0 611 272 316 27 chr9 70895463 70895764 -71375680 - L2 LINE L2 0 3272 2885 257 358 97 22 chr9 70895984 70896210 -71375234 + MIR SINE MIR 2 244 -18 231 200 183 0 chr9 70896562 70896622 -71374822 + MIR SINE MIR 102 172 -90 2151 212 138 40 chr9 70897397 70898208 -71373236 + L1MC4 LINE L1 7152 8042 0 248 328 29 75 chr9 70898795 70898969 -71372475 - MIR SINE MIR 0 262 97 574 269 11 63 chr9 70900484 70900659 -71370785 + MER5A DNA MER1_type 2 167 -22 182 380 114 33 chr9 70900675 70901165 -71370279 + L2 LINE L2 1862 2391 -923 2467 61 0 0 chr9 70901518 70901815 -71369629 - AluY SINE Alu -14 297 1 194 61 0 30 chr9 70901923 70901956 -71369488 + (TTA)n Simple_repeat Simple_repeat 2 33 0 988 95 0 0 chr9 70901959 70902085 -71369359 - AluSg/x SINE Alu -30 282 157 257 285 85 69 chr9 70902254 70902384 -71369060 + L2 LINE L2 3141 3272 0 360 250 74 0 chr9 70902698 70902806 -71368638 + MER103 DNA DNA 3 118 -48 2062 84 27 37 chr9 70902834 70903130 -71368314 - AluSg1 SINE Alu -16 293 1 21 0 0 0 chr9 70904246 70904267 -71367177 + AT_rich Low_complexity Low_complexity 1 21 0 489 17 0 0 chr9 70904656 70904714 -71366730 + (CA)n Simple_repeat Simple_repeat 1 58 0 332 336 19 0 chr9 70904738 70904842 -71366602 + L2 LINE L2 3208 3313 0 437 82 12 118 chr9 70904921 70905006 -71366438 + MADE1 DNA Mariner 2 77 -3 330 310 17 52 chr9 70906584 70906753 -71364691 + MIR SINE MIR 3 165 -69 549 165 10 0 chr9 70906754 70906851 -71364593 + L1MB1 LINE L1 6062 6159 -9 325 309 76 7 chr9 70908194 70908347 -71363097 - MIR SINE MIR -57 205 44 311 319 0 18 chr9 70908855 70908968 -71362476 - MIR SINE MIR -104 158 48 306 330 39 22 chr9 70909205 70909387 -71362057 + MER117 DNA MER1_type 3 187 -10 243 0 0 0 chr9 70909941 70909968 -71361476 + (A)n Simple_repeat Simple_repeat 1 27 0 242 309 64 18 chr9 70910954 70911064 -71360380 - MIR3 SINE MIR -12 196 82 533 282 21 49 chr9 70911591 70911855 -71359589 + MIR SINE MIR 3 258 -4 394 317 122 0 chr9 70912796 70912976 -71358468 - MIR SINE MIR -5 257 56 2352 131 27 3 chr9 70913344 70913717 -71357727 + MLT1B LTR MaLR 1 382 -8 280 298 153 0 chr9 70914391 70914515 -71356929 - MIR SINE MIR -3 259 117 444 218 141 39 chr9 70915531 70915687 -71355757 + MER57A LTR ERV1 3 174 -229 478 252 48 15 chr9 70915688 70915857 -71355587 + MER93a LTR ERV1 225 398 -5 351 0 0 0 chr9 70915862 70915901 -71355543 + (T)n Simple_repeat Simple_repeat 1 39 0 368 331 60 24 chr9 70916172 70916338 -71355106 + L3 LINE CR1 932 1103 -474 1918 176 20 55 chr9 70916347 70916750 -71354694 + MLT2C1 LTR ERVL 1 389 -8 891 307 70 14 chr9 70916751 70917168 -71354276 + L3 LINE CR1 1117 1556 -21 277 319 122 13 chr9 70917184 70917410 -71354034 - MIR SINE MIR -4 258 8 206 346 131 76 chr9 70917628 70918102 -71353342 - L2 LINE L2 0 3313 2814 2572 196 20 27 chr9 70918234 70918789 -71352655 + MER68 LTR ERV1 12 562 0 1946 203 15 10 chr9 70919458 70919852 -71351592 + MSTD LTR MaLR 1 396 0 431 272 68 0 chr9 70924068 70924215 -71347229 - L1ME4a LINE L1 0 6121 5965 375 324 73 53 chr9 70924301 70924548 -71346896 + MIR SINE MIR 1 252 -10 232 330 132 0 chr9 70924674 70924765 -71346679 + MIR3 SINE MIR 53 155 -53 332 292 108 0 chr9 70925517 70925647 -71345797 + MER5A DNA MER1_type 46 189 0 486 269 48 0 chr9 70925893 70926038 -71345406 + L1MC4a LINE L1 5758 5909 -1899 1991 101 22 7 chr9 70926043 70926319 -71345125 - AluSc SINE Alu -29 280 1 2297 115 3 0 chr9 70926444 70926749 -71344695 - AluSx SINE Alu -4 308 3 22 0 0 0 chr9 70926751 70926773 -71344671 + AT_rich Low_complexity Low_complexity 1 22 0 311 267 190 26 chr9 70928531 70928726 -71342718 + MIR SINE MIR 20 246 -16 751 289 17 34 chr9 70929240 70929479 -71341965 - MIR SINE MIR -4 258 24 2001 170 37 40 chr9 70929517 70929947 -71341497 + LTR3 LTR ERVK 1 429 0 470 95 0 0 chr9 70929947 70930010 -71341434 + LTR3b LTR ERVK 438 500 0 25 0 0 0 chr9 70930603 70930628 -71340816 + AT_rich Low_complexity Low_complexity 1 25 0 437 38 0 0 chr9 70931366 70931419 -71340025 + MADE1 DNA Mariner 1 53 -27 442 257 29 29 chr9 70931420 70931556 -71339888 + MIR SINE MIR 101 236 -26 582 260 43 39 chr9 70932968 70933176 -71338268 - MER63A DNA MER1_type -1 209 1 196 282 64 26 chr9 70933577 70933655 -71337789 + MER5B DNA MER1_type 42 122 -56 348 339 23 46 chr9 70933997 70934127 -71337317 + MER5A DNA MER1_type 63 189 0 416 285 25 97 chr9 70934845 70935206 -71336238 + L1MC4a LINE L1 5592 5926 -1882 299 212 141 12 chr9 70935770 70935855 -71335589 - MER117 DNA MER1_type -73 124 29 229 308 8 68 chr9 70936291 70936408 -71335036 + MIR3 SINE MIR 83 192 -16 2131 106 3 0 chr9 70936727 70937065 -71334379 + AluSp SINE Alu 1 339 0 744 310 68 14 chr9 70937243 70937524 -71333920 + MER45C DNA AcHobo 2 297 -656 554 190 11 28 chr9 70937538 70937729 -71333715 + MER45C DNA AcHobo 736 953 0 594 271 133 9 chr9 70938135 70938353 -71333091 + MIR SINE MIR 14 258 -4 228 86 0 0 chr9 70938526 70938561 -71332883 + (CA)n Simple_repeat Simple_repeat 2 36 0 565 283 143 14 chr9 70940073 70940306 -71331138 - MIR SINE MIR 0 262 3 342 0 0 0 chr9 70940564 70940602 -71330842 + (CA)n Simple_repeat Simple_repeat 2 39 0 272 140 0 18 chr9 70940688 70940745 -71330699 + (TA)n Simple_repeat Simple_repeat 1 56 0 5133 186 10 16 chr9 70941267 70943213 -71328231 + L1PA16 LINE L1 4280 6166 0 358 187 80 0 chr9 70943721 70943796 -71327648 + MER96 DNA MER1_type? 95 175 0 22 0 0 0 chr9 70944319 70944341 -71327103 + AT_rich Low_complexity Low_complexity 1 22 0 351 115 39 31 chr9 70945948 70946078 -71325366 + (TA)n Simple_repeat Simple_repeat 1 131 0 317 323 75 25 chr9 70946468 70946629 -71324815 - L3 LINE CR1 0 1577 1409 1374 138 41 0 chr9 70946720 70946938 -71324506 + MER30 DNA MER1_type 4 230 0 239 352 56 0 chr9 70947056 70947181 -71324263 - L2 LINE L2 -225 3047 2916 306 340 53 16 chr9 70947316 70947504 -71323940 - L3 LINE CR1 -394 1183 989 765 286 70 12 chr9 70947513 70947754 -71323690 + MIR SINE MIR 8 262 0 433 276 284 30 chr9 70948132 70948600 -71322844 + MLT1K LTR MaLR 2 588 0 252 243 40 54 chr9 70949109 70949183 -71322261 - MER91C DNA MER1_type -49 91 19 6857 69 2 13 chr9 70949682 70951136 -71320308 + L1PA8 LINE L1 4716 6172 0 379 310 44 0 chr9 70951149 70951262 -71320182 - L2 LINE L2 -9 3304 3187 354 266 184 32 chr9 70951443 70951601 -71319843 + MIR SINE MIR 49 230 -32 2319 113 0 0 chr9 70952338 70952649 -71318795 + AluSx SINE Alu 1 311 -1 297 0 0 0 chr9 70953423 70953456 -71317988 + (CA)n Simple_repeat Simple_repeat 1 33 0 333 68 0 0 chr9 70953456 70953500 -71317944 + (TC)n Simple_repeat Simple_repeat 1 44 0 197 174 0 22 chr9 70954202 70954248 -71317196 + (TA)n Simple_repeat Simple_repeat 2 46 0 263 300 130 10 chr9 70955431 70955531 -71315913 + MIR3 SINE MIR 83 194 -14 2019 189 19 6 chr9 70955913 70956273 -71315171 - MLT1A1 LTR MaLR 0 365 1 535 260 124 6 chr9 70956618 70956787 -71314657 - MIR SINE MIR -49 213 25 24 0 0 0 chr9 70957048 70957072 -71314372 + AT_rich Low_complexity Low_complexity 1 24 0 329 316 115 28 chr9 70957268 70957486 -71313958 + MIR SINE MIR 26 262 0 204 256 0 0 chr9 70957668 70957711 -71313733 + MIR SINE MIR 220 262 0 221 356 96 14 chr9 70959084 70959230 -71312214 + L2 LINE L2 3106 3263 -9 430 366 49 46 chr9 70959267 70959775 -71311669 + L2 LINE L2 2769 3268 -4 196 362 14 0 chr9 70960600 70960669 -71310775 + L2 LINE L2 3203 3272 0 2062 134 0 3 chr9 70960781 70961073 -71310371 - AluSx SINE Alu -17 295 5 211 274 126 11 chr9 70961276 70961371 -71310073 - MIR SINE MIR -10 252 147 1702 239 103 15 chr9 70961596 70962122 -71309322 + L1ME3 LINE L1 5389 5960 -202 1741 211 55 25 chr9 70962176 70962651 -71308793 - MER74B LTR ERVL -56 566 78 452 258 53 53 chr9 70962681 70962890 -71308554 + L1ME3 LINE L1 5954 6162 0 2508 131 36 5 chr9 70963106 70963518 -71307926 + MSTB LTR MaLR 1 425 -1 437 364 77 34 chr9 70964142 70964469 -71306975 + L2 LINE L2 2932 3272 0 256 296 119 25 chr9 70964956 70965115 -71306329 - L3b LINE CR1 -128 1455 1282 1590 147 12 177 chr9 70965696 70966192 -71305252 + MLT2D LTR ERVL 1 414 0 186 297 97 65 chr9 70966662 70966817 -71304627 + MIR SINE MIR 103 262 0 226 200 22 0 chr9 70967063 70967108 -71304336 - MIR3 SINE MIR -6 202 157 979 263 36 11 chr9 70967112 70967390 -71304054 + MER58B DNA MER1_type 6 290 -51 349 232 24 0 chr9 70967408 70967490 -71303954 + MER58B DNA MER1_type 255 338 -3 340 325 0 0 chr9 70967492 70967575 -71303869 - MIR3 SINE MIR -48 160 78 808 197 13 96 chr9 70968241 70968480 -71302964 + MER20 DNA MER1_type 1 219 0 554 346 90 28 chr9 70969658 70970299 -71301145 - L2 LINE L2 -189 3083 2368 241 299 195 7 chr9 70970726 70970880 -71300564 - MER5A DNA MER1_type -6 183 1 243 88 0 0 chr9 70970981 70971015 -71300429 + (CCTA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr9 70971307 70971338 -71300106 + AT_rich Low_complexity Low_complexity 1 31 0 396 293 30 42 chr9 70972080 70972247 -71299197 + MER5A DNA MER1_type 7 171 -18 186 345 225 29 chr9 70973910 70974217 -71297227 + L2 LINE L2 2440 2806 -508 292 83 333 0 chr9 70974220 70974280 -71297164 + MADE1 DNA Mariner 1 80 0 484 271 29 36 chr9 70974417 70974557 -71296887 - MIR3 SINE MIR -55 153 15 241 206 32 32 chr9 70975647 70975710 -71295734 + GA-rich Low_complexity Low_complexity 2 64 0 337 318 58 35 chr9 70979850 70980023 -71291421 - MIR SINE MIR -75 187 11 825 273 60 0 chr9 70980159 70980375 -71291069 + MIR SINE MIR 12 240 -22 3509 94 41 8 chr9 70982066 70982597 -71288847 - L1PA10 LINE L1 -4 6164 5616 2583 93 0 11 chr9 70982597 70983206 -71288238 + L1PA10 LINE L1 5006 5607 -561 571 289 80 0 chr9 70983602 70983789 -71287655 - L3 LINE CR1 -41 1536 1335 216 0 0 0 chr9 70984154 70984178 -71287266 + (CA)n Simple_repeat Simple_repeat 2 25 0 438 318 18 12 chr9 70984332 70984502 -71286942 + MIR SINE MIR 30 200 -62 728 303 35 20 chr9 70984598 70984852 -71286592 + MIR SINE MIR 5 262 0 206 219 0 0 chr9 70985451 70985492 -71285952 + (CA)n Simple_repeat Simple_repeat 2 42 0 717 283 101 4 chr9 70986294 70986531 -71284913 - MIR SINE MIR -1 261 2 23 0 0 0 chr9 70986536 70986559 -71284885 + AT_rich Low_complexity Low_complexity 1 23 0 193 349 133 12 chr9 70986775 70986858 -71284586 + L2 LINE L2 3162 3254 -18 375 303 92 0 chr9 70986919 70987061 -71284383 - MIR SINE MIR -59 203 49 617 297 165 27 chr9 70987865 70988402 -71283042 + L2 LINE L2 2708 3312 -1 285 250 0 0 chr9 70989043 70989111 -71282333 - MIR SINE MIR -108 154 87 754 277 45 1 chr9 70989265 70989476 -71281968 + L1ME1 LINE L1 5921 6145 -33 26 50 0 0 chr9 70989522 70989562 -71281882 + AT_rich Low_complexity Low_complexity 1 40 0 573 275 140 39 chr9 70989631 70990154 -71281290 - L1ME4a LINE L1 -204 5917 5317 2251 92 7 16 chr9 70990154 70990459 -71280985 - AluSp SINE Alu -11 302 1 573 275 140 39 chr9 70990459 70990529 -71280915 - L1ME4a LINE L1 -804 5317 5255 477 127 0 0 chr9 70990825 70990904 -71280540 + (TG)n Simple_repeat Simple_repeat 2 80 0 2105 112 37 0 chr9 70991144 70991438 -71280006 + AluSc SINE Alu 1 305 -4 234 387 61 0 chr9 70992205 70992386 -71279058 + MIR3 SINE MIR 16 207 -1 183 143 86 0 chr9 70992672 70992707 -71278737 - L2 LINE L2 -1896 1418 1381 233 333 15 0 chr9 70992890 70992956 -71278488 - L2 LINE L2 -5 3267 3201 258 272 88 24 chr9 70993798 70993923 -71277521 - L2 LINE L2 -549 2765 2633 2116 132 10 0 chr9 70994696 70995000 -71276444 + AluSx SINE Alu 1 307 -5 345 153 0 28 chr9 70995449 70995521 -71275923 + L1MB8 LINE L1 6109 6178 0 24 0 0 0 chr9 70996427 70996451 -71274993 + AT_rich Low_complexity Low_complexity 1 24 0 380 261 152 47 chr9 70996850 70997089 -71274355 + MLT1L LTR MaLR 263 492 -19 240 292 62 10 chr9 70997128 70997224 -71274220 - MIR SINE MIR -132 130 30 273 109 0 0 chr9 70997502 70997548 -71273896 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 195 359 31 0 chr9 70997548 70997612 -71273832 - L2 LINE L2 -26 3246 3181 22 0 0 0 chr9 70998204 70998226 -71273218 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 70998577 70998606 -71272838 + AT_rich Low_complexity Low_complexity 1 29 0 529 283 14 0 chr9 70999165 70999303 -71272141 - LTR16C LTR ERVL 0 491 352 305 189 27 0 chr9 70999343 70999417 -71272027 + (CATA)n Simple_repeat Simple_repeat 1 76 0 1046 137 106 168 chr9 70999685 71000007 -71271437 + AluJb SINE Alu 1 302 0 5822 84 18 2 chr9 71000054 71000850 -71270594 - L1PA13 LINE L1 0 6163 5356 799 319 90 20 chr9 71003687 71004041 -71267403 + MLT1K LTR MaLR 189 567 -21 208 366 76 30 chr9 71004118 71004249 -71267195 - L2 LINE L2 0 3272 3136 336 24 0 0 chr9 71004279 71004320 -71267124 + (CA)n Simple_repeat Simple_repeat 2 42 0 450 241 162 58 chr9 71005463 71005828 -71265616 + HAL1b LINE L1 483 885 -463 1781 168 3 10 chr9 71005977 71006274 -71265170 + AluJo SINE Alu 1 295 -17 406 333 69 57 chr9 71006456 71006552 -71264892 + L1MC4a LINE L1 2942 3035 -3111 1495 170 39 39 chr9 71006552 71006835 -71264609 + AluJb SINE Alu 3 285 -27 406 333 69 57 chr9 71006835 71007230 -71264214 + L1MC4a LINE L1 3035 3439 -2707 344 361 112 0 chr9 71007698 71007903 -71263541 + L1MC4a LINE L1 4740 4967 -1179 1298 271 118 17 chr9 71008128 71008712 -71262732 + L1MC4a LINE L1 5263 5905 -1903 221 310 168 18 chr9 71009682 71009795 -71261649 - L2 LINE L2 -3 3269 3140 1993 130 31 3 chr9 71010150 71010442 -71261002 - AluSx SINE Alu -12 300 1 22 0 0 0 chr9 71010973 71010995 -71260449 + AT_rich Low_complexity Low_complexity 1 22 0 355 228 63 0 chr9 71011229 71011308 -71260136 + MIR3 SINE MIR 95 178 -30 391 324 129 54 chr9 71012125 71012178 -71259266 - L2 LINE L2 -3 3310 3262 1921 137 27 7 chr9 71012178 71012341 -71259103 - AluSq SINE Alu -14 299 126 396 0 0 0 chr9 71012341 71012385 -71259059 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1921 137 27 7 chr9 71012385 71012513 -71258931 - AluSq SINE Alu -187 126 2 391 324 129 54 chr9 71012513 71012832 -71258612 - L2 LINE L2 -51 3262 2910 196 308 19 0 chr9 71012887 71012939 -71258505 + MER5B DNA MER1_type 123 175 -3 454 296 47 81 chr9 71013040 71013232 -71258212 + MIR SINE MIR 14 206 -56 408 20 0 0 chr9 71013232 71013281 -71258163 + (CA)n Simple_repeat Simple_repeat 2 50 0 454 296 47 81 chr9 71013281 71013333 -71258111 + MIR SINE MIR 206 258 -4 395 338 28 0 chr9 71015073 71015222 -71256222 - MIR SINE MIR -62 146 36 207 326 45 0 chr9 71015427 71015516 -71255928 + MIR SINE MIR 79 171 -91 1983 223 48 23 chr9 71015518 71015966 -71255478 + MLT2B1 LTR ERVL 1 463 -57 294 29 0 0 chr9 71015966 71016001 -71255443 + (GA)n Simple_repeat Simple_repeat 2 36 0 1983 223 48 23 chr9 71016001 71016032 -71255412 + MLT2B1 LTR ERVL 463 492 -28 491 291 132 47 chr9 71016878 71017264 -71254180 + L2 LINE L2 2794 3192 -121 188 211 0 0 chr9 71017262 71017300 -71254144 + MIR SINE MIR 223 260 -2 * 2013 139 10 3 chr9 71018780 71019090 -71252354 + AluSx SINE Alu 1 312 0 27 73 0 0 chr9 71019521 71019576 -71251868 + AT_rich Low_complexity Low_complexity 1 55 0 * 197 271 186 0 chr9 71019560 71019630 -71251814 - L2 LINE L2 -2 3311 3229 627 375 90 34 chr9 71019852 71020191 -71251253 - L2 LINE L2 -429 2885 2566 243 0 0 0 chr9 71020191 71020218 -71251226 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 627 375 90 34 chr9 71020218 71020841 -71250603 - L2 LINE L2 -748 2566 1869 899 204 43 35 chr9 71021965 71022195 -71249249 + MIR SINE MIR 31 262 0 548 83 17 25 chr9 71025399 71025519 -71245925 + (TTTA)n Simple_repeat Simple_repeat 3 121 0 28 29 0 0 chr9 71025593 71025628 -71245816 + AT_rich Low_complexity Low_complexity 1 35 0 453 276 148 84 chr9 71025713 71026166 -71245278 - Charlie8 DNA MER1_type -1929 488 7 1365 133 26 142 chr9 71026538 71026884 -71244560 + AluYb8 SINE Alu 3 308 0 8672 52 8 2 chr9 71027351 71028415 -71243029 + MER11C LTR ERVK 1 1071 0 270 318 59 0 chr9 71028575 71028660 -71242784 - MER91C DNA MER1_type 0 140 51 1752 151 10 20 chr9 71028759 71029063 -71242381 - AluJo SINE Alu -10 302 2 214 273 36 82 chr9 71029069 71029179 -71242265 - L2 LINE L2 -221 3051 2947 1475 182 4 4 chr9 71029273 71029526 -71241918 - AluJb SINE Alu -17 295 43 23 33 0 0 chr9 71030119 71030149 -71241295 + AT_rich Low_complexity Low_complexity 1 30 0 186 256 17 86 chr9 71031083 71031122 -71240322 - L2 LINE L2 -1001 2313 2273 1974 148 3 3 chr9 71031122 71031420 -71240024 + AluSx SINE Alu 1 298 -14 186 256 17 86 chr9 71031420 71031497 -71239947 - L2 LINE L2 -1041 2273 2205 7002 143 33 8 chr9 71032704 71033766 -71237678 + Tigger3b DNA MER2_type 2 1100 -1928 3488 129 9 11 chr9 71033766 71034294 -71237150 + MER1A DNA MER1_type 1 527 0 7002 143 33 8 chr9 71034294 71034430 -71237014 + Tigger3b DNA MER2_type 1100 1231 0 2186 140 0 0 chr9 71036910 71037217 -71234227 - AluSq SINE Alu -6 307 1 257 234 117 0 chr9 71038438 71038515 -71232929 - MIR SINE MIR -50 212 127 342 348 45 11 chr9 71038708 71038886 -71232558 + MER5A DNA MER1_type 2 185 -4 2003 139 3 0 chr9 71039530 71039824 -71231620 - AluSx SINE Alu -16 296 2 202 189 0 0 chr9 71041796 71041833 -71229611 + (CA)n Simple_repeat Simple_repeat 2 38 0 367 238 95 10 chr9 71042491 71042633 -71228811 - MIR SINE MIR -13 249 94 1640 223 50 26 chr9 71042723 71043141 -71228303 - MLT1C LTR MaLR -1 466 39 602 60 12 0 chr9 71044733 71044816 -71226628 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 676 329 39 0 chr9 71044842 71045152 -71226292 - L1ME LINE L1 -318 5803 5482 22 0 0 0 chr9 71045189 71045211 -71226233 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr9 71045369 71045406 -71226038 + AT_rich Low_complexity Low_complexity 1 37 0 453 313 69 0 chr9 71045612 71045772 -71225672 + MIR SINE MIR 69 239 -23 435 293 133 27 chr9 71047835 71048060 -71223384 - MIR SINE MIR -12 250 2 297 277 21 32 chr9 71048063 71048157 -71223287 + L2 LINE L2 3175 3267 -5 1890 151 19 1 chr9 71049283 71049743 -71221701 - L1M2 LINE L1 -743 5403 5030 461 167 148 0 chr9 71049743 71049851 -71221593 + L1MA9 LINE L1 6183 6306 -6 752 272 154 45 chr9 71051187 71051569 -71219875 + MLT1J1 LTR MaLR 23 446 0 5092 145 59 9 chr9 71051914 71052983 -71218461 + L1PA13 LINE L1 5034 6144 -19 246 62 0 0 chr9 71053026 71053058 -71218386 + (TG)n Simple_repeat Simple_repeat 2 33 0 39268 34 8 2 chr9 71053735 71059282 -71212162 - L1PA3 LINE L1 -3 6152 569 572 262 152 11 chr9 71059559 71059750 -71211694 + MIR SINE MIR 8 225 -37 341 267 69 10 chr9 71060050 71060151 -71211293 + MIR SINE MIR 31 137 -125 1043 225 38 13 chr9 71060408 71060644 -71210800 + MIR SINE MIR 20 261 -1 230 161 0 36 chr9 71060647 71060703 -71210741 + CT-rich Low_complexity Low_complexity 1 54 0 7248 42 10 0 chr9 71060779 71062079 -71209365 + L1PA4 LINE L1 4845 6153 -2 21 0 0 0 chr9 71062105 71062126 -71209318 + AT_rich Low_complexity Low_complexity 1 21 0 3518 80 24 2 chr9 71062912 71063729 -71207715 - L1P3 LINE L1 -454 5700 4874 21 36 0 0 chr9 71064156 71064184 -71207260 + AT_rich Low_complexity Low_complexity 1 28 0 224 230 0 14 chr9 71066208 71066282 -71205162 + GA-rich Low_complexity Low_complexity 1 73 0 1805 177 21 15 chr9 71066501 71066840 -71204604 + MER58B DNA MER1_type 1 341 0 3352 123 6 8 chr9 71066877 71067371 -71204073 + MER1A DNA MER1_type 37 529 0 1447 219 3 67 chr9 71067563 71067951 -71203493 - MLT1A2 LTR MaLR 0 374 12 2458 163 41 28 chr9 71068315 71068776 -71202668 - MLT1C LTR MaLR 0 467 1 1145 190 36 0 chr9 71068968 71069189 -71202255 - AluJb SINE Alu 0 312 84 368 234 121 35 chr9 71069319 71069460 -71201984 + MER103 DNA DNA 13 165 -1 207 0 0 0 chr9 71069715 71069738 -71201706 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1486 221 21 6 chr9 71069924 71070254 -71201190 - MER58B DNA MER1_type 0 341 7 189 0 0 0 chr9 71070372 71070393 -71201051 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 921 233 0 0 chr9 71071187 71071376 -71200068 + L1M4 LINE L1 5570 5758 -426 252 378 78 16 chr9 71071408 71071772 -71199672 + L2 LINE L2 2662 3060 -212 258 56 0 0 chr9 71071891 71071927 -71199517 + (A)n Simple_repeat Simple_repeat 1 36 0 194 284 245 0 chr9 71071933 71072035 -71199409 + L2 LINE L2 3146 3272 0 237 263 97 61 chr9 71073551 71073665 -71197779 + L2 LINE L2 3155 3272 0 2865 6 0 0 chr9 71073804 71074115 -71197329 - AluY SINE Alu 0 311 1 648 233 32 69 chr9 71075178 71075367 -71196077 - MIR SINE MIR -51 211 30 306 0 0 0 chr9 71077222 71077256 -71194188 + (TTA)n Simple_repeat Simple_repeat 3 36 0 270 296 169 7 chr9 71077475 71077617 -71193827 + MIR SINE MIR 40 204 -58 278 174 0 87 chr9 71078099 71078168 -71193276 + MER58B DNA MER1_type 276 338 -3 30 27 0 0 chr9 71078276 71078313 -71193131 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr9 71078341 71078369 -71193075 + AT_rich Low_complexity Low_complexity 1 28 0 289 278 60 15 chr9 71078376 71078509 -71192935 - MER33 DNA MER1_type -183 141 3 21574 151 37 49 chr9 71079360 71081620 -71189824 + L1MA3 LINE L1 16 2301 -5423 239 114 0 0 chr9 71081620 71081664 -71189780 + Alu SINE Alu 259 302 0 21574 151 37 49 chr9 71081664 71082532 -71188912 + L1MA3 LINE L1 2301 3178 -4546 1971 132 14 0 chr9 71082532 71082821 -71188623 - AluSx SINE Alu -19 293 1 21574 151 37 49 chr9 71082821 71083863 -71187581 + L1MA3 LINE L1 3178 4231 -3493 901 156 0 0 chr9 71083863 71084004 -71187440 + AluSg/x SINE Alu 172 312 0 21574 151 37 49 chr9 71084004 71087482 -71183962 + L1MA3 LINE L1 4231 7724 0 1480 205 93 87 chr9 71087964 71088456 -71182988 + MLT1D LTR MaLR 5 499 -6 1660 154 66 0 chr9 71088488 71088793 -71182651 + L1PA16 LINE L1 5834 6158 -8 189 333 21 54 chr9 71089151 71089244 -71182200 - MIR SINE MIR -155 107 18 2323 105 3 0 chr9 71089358 71089664 -71181780 - AluSg SINE Alu -3 307 1 1767 225 180 7 chr9 71090802 71091264 -71180180 - MLT1F LTR MaLR 0 542 1 2094 150 48 0 chr9 71091288 71091641 -71179803 - MLT1B LTR MaLR 0 390 21 991 242 123 53 chr9 71091895 71092366 -71179078 + L2 LINE L2 2809 3312 -1 331 358 12 35 chr9 71093055 71093228 -71178216 + MIR3 SINE MIR 31 199 -9 2234 105 7 0 chr9 71093631 71093927 -71177517 + AluSx SINE Alu 1 298 -14 281 276 53 0 chr9 71093927 71094003 -71177441 + polypurine Low_complexity Low_complexity 1 80 0 1096 201 123 47 chr9 71094552 71094888 -71176556 - MLT1A1 LTR MaLR 0 365 1 22 70 0 0 chr9 71097089 71097132 -71174312 + AT_rich Low_complexity Low_complexity 1 43 0 225 345 118 9 chr9 71097196 71097306 -71174138 + L2 LINE L2 3150 3271 -1 2423 34 3 0 chr9 71098232 71098524 -71172920 + L1PA4 LINE L1 5862 6154 -1 423 298 54 118 chr9 71099472 71099751 -71171693 + L2 LINE L2 2514 2774 -540 1875 133 70 0 chr9 71099904 71100190 -71171254 - AluSx SINE Alu -6 306 1 343 304 215 25 chr9 71100190 71100506 -71170938 + L2 LINE L2 2938 3313 0 739 333 87 23 chr9 71100632 71101185 -71170259 - MER115 DNA AcHobo -12 681 12 234 324 14 0 chr9 71101235 71101306 -71170138 - MIR SINE MIR -184 78 7 200 276 66 40 chr9 71101566 71101642 -71169802 - L2 LINE L2 -9 3263 3186 2115 109 24 7 chr9 71102033 71102326 -71169118 + AluSx SINE Alu 1 298 -14 188 230 68 54 chr9 71102831 71102905 -71168539 - L2 LINE L2 -1899 1415 1341 522 132 0 0 chr9 71103943 71104019 -71167425 - AluS SINE Alu -227 86 11 1648 122 0 0 chr9 71104020 71104242 -71167202 + AluSg/x SINE Alu 81 302 -8 522 268 96 26 chr9 71105088 71105486 -71165958 + MLT1L LTR MaLR 142 611 -4 405 347 51 46 chr9 71107242 71107927 -71163517 - L2 LINE L2 0 3313 2638 27 49 0 0 chr9 71108332 71108373 -71163071 + AT_rich Low_complexity Low_complexity 1 41 0 3738 99 73 7 chr9 71108439 71109044 -71162400 - L1MA2 LINE L1 0 6304 5660 1457 182 6 54 chr9 71109540 71109853 -71161591 - AluJo SINE Alu -14 298 1 904 219 31 10 chr9 71110194 71110390 -71161054 + MER20 DNA MER1_type 13 212 -7 3960 137 36 29 chr9 71110478 71110803 -71160641 + L1MA8 LINE L1 5554 5875 -416 2196 100 0 0 chr9 71110803 71111084 -71160360 - AluSc SINE Alu -28 281 1 3960 137 36 29 chr9 71111084 71111486 -71159958 + L1MA8 LINE L1 5875 6286 -5 215 302 0 0 chr9 71111687 71111750 -71159694 + A-rich Low_complexity Low_complexity 4 66 0 206 260 65 26 chr9 71112586 71112663 -71158781 + MIR3 SINE MIR 85 164 -44 329 254 110 0 chr9 71113786 71113904 -71157540 - MER103 DNA DNA -16 150 20 591 260 144 11 chr9 71115035 71115216 -71156228 - MIR SINE MIR -44 218 14 278 286 162 26 chr9 71115527 71115681 -71155763 - MIR SINE MIR -19 243 69 23 0 0 0 chr9 71115737 71115760 -71155684 + AT_rich Low_complexity Low_complexity 1 23 0 8194 104 14 3 chr9 71115766 71117765 -71153679 - L1PA7 LINE L1 0 6469 4453 12227 108 16 44 chr9 71117765 71119836 -71151608 - L1PA7 LINE L1 -4389 2072 12 1860 151 0 45 chr9 71120642 71120954 -71150490 - AluJo SINE Alu -4 308 11 251 163 0 0 chr9 71121255 71121304 -71150140 + L1MA9 LINE L1 6259 6307 -5 283 366 15 30 chr9 71121448 71121579 -71149865 - MIR SINE MIR -46 216 88 1495 179 21 0 chr9 71123478 71123768 -71147676 - L1MB1 LINE L1 -1 6167 5872 546 272 159 35 chr9 71124037 71124327 -71147117 + L2 LINE L2 2988 3313 0 22 35 0 0 chr9 71124555 71124584 -71146860 + AT_rich Low_complexity Low_complexity 1 29 0 2009 134 7 0 chr9 71124969 71125274 -71146170 + AluSx SINE Alu 1 307 -5 2013 114 9 25 chr9 71125412 71125727 -71145717 + AluSx SINE Alu 1 310 -2 284 366 35 55 chr9 71125732 71125934 -71145510 - L2 LINE L2 -217 3055 2858 372 289 146 20 chr9 71126945 71126971 -71144473 + L2 LINE L2 2713 2734 -579 1835 121 0 4 chr9 71126971 71127243 -71144201 + AluSq SINE Alu 36 306 -7 372 289 146 20 chr9 71127243 71127509 -71143935 + L2 LINE L2 2734 3035 -278 1628 233 91 32 chr9 71127509 71128019 -71143425 + MLT1F LTR MaLR 1 542 0 890 182 0 3 chr9 71128206 71128546 -71142898 + CT-rich Low_complexity Low_complexity 1 339 0 210 393 12 0 chr9 71129095 71129179 -71142265 - MIR3 SINE MIR -49 159 75 268 269 0 0 chr9 71131088 71131155 -71140289 - MIR SINE MIR -104 158 92 262 312 72 2 chr9 71131462 71131577 -71139867 - MIR SINE MIR -74 134 35 2447 46 3 10 chr9 71131694 71132000 -71139444 + AluY SINE Alu 1 304 -7 315 104 0 0 chr9 71133718 71133766 -71137678 + (CATA)n Simple_repeat Simple_repeat 2 49 0 217 300 50 12 chr9 71133819 71133899 -71137545 + MIR3 SINE MIR 117 199 -9 189 94 0 0 chr9 71134385 71134417 -71137027 + (TG)n Simple_repeat Simple_repeat 1 32 0 258 314 97 48 chr9 71134627 71134751 -71136693 + MIR SINE MIR 63 192 -70 3757 165 43 10 chr9 71134993 71135820 -71135624 - L1MA4A LINE L1 -23 6280 5365 200 293 61 12 chr9 71136699 71136781 -71134663 + MIR SINE MIR 120 205 -57 248 246 101 87 chr9 71138256 71138394 -71133050 + L2 LINE L2 3172 3311 -2 271 386 36 23 chr9 71138722 71138942 -71132502 - L2 LINE L2 -571 2743 2521 940 306 105 35 chr9 71138973 71139610 -71131834 - L2 LINE L2 -584 2730 2049 25 0 0 0 chr9 71140429 71140454 -71130990 + AT_rich Low_complexity Low_complexity 1 25 0 2441 215 24 6 chr9 71140476 71140982 -71130462 + MLT2B1 LTR ERVL 6 520 0 738 219 164 59 chr9 71141072 71141396 -71130048 + L1ME1 LINE L1 5803 6160 -6 733 181 0 0 chr9 71142055 71142182 -71129262 - FLAM_C SINE Alu -6 137 11 208 237 0 0 chr9 71142453 71142491 -71128953 + (TG)n Simple_repeat Simple_repeat 2 39 0 1824 168 0 22 chr9 71142492 71142808 -71128636 - AluJb SINE Alu -3 309 1 2180 190 52 14 chr9 71143322 71143807 -71127637 - MLT1D LTR MaLR -2 503 1 22 56 0 0 chr9 71144598 71144634 -71126810 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 71145280 71145301 -71126143 + AT_rich Low_complexity Low_complexity 1 21 0 258 221 74 11 chr9 71146060 71146155 -71125289 + L1ME LINE L1 5754 5854 -267 5559 160 45 23 chr9 71146922 71148162 -71123282 - L1MC1 LINE L1 -6 6327 5071 375 158 281 0 chr9 71148173 71148255 -71123189 - MER30 DNA MER1_type -1 229 125 879 87 43 164 chr9 71148259 71148466 -71122978 - MER30 DNA MER1_type -48 182 1 1081 232 13 17 chr9 71148475 71148777 -71122667 - L1MC1 LINE L1 -1086 5060 4760 1294 142 5 0 chr9 71152005 71152202 -71119242 + AluSq SINE Alu 116 313 0 2287 91 3 0 chr9 71153268 71153564 -71117880 - AluSc SINE Alu -10 299 3 358 291 49 3 chr9 71155028 71155159 -71116285 + MIR SINE MIR 57 190 -58 289 191 29 0 chr9 71156136 71156204 -71115240 - L1MA8 LINE L1 -18 6273 6204 263 93 23 0 chr9 71157326 71157369 -71114075 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 215 200 0 0 chr9 71158279 71158314 -71113130 - L2 LINE L2 -16 3297 3263 23 0 0 0 chr9 71158604 71158627 -71112817 + AT_rich Low_complexity Low_complexity 1 23 0 341 187 13 0 chr9 71160581 71160656 -71110788 + CT-rich Low_complexity Low_complexity 2 77 0 373 336 14 7 chr9 71160710 71160856 -71110588 + MIR SINE MIR 108 254 -8 552 242 24 48 chr9 71162310 71162425 -71109019 + MIR SINE MIR 13 124 -138 2358 116 22 11 chr9 71162425 71162796 -71108648 + THE1C LTR MaLR 1 375 0 552 242 24 48 chr9 71162796 71162845 -71108599 + MIR SINE MIR 124 173 -89 1538 92 0 10 chr9 71162970 71163176 -71108268 + AluSg/x SINE Alu 103 306 -4 347 326 110 25 chr9 71163210 71163502 -71107942 + L2 LINE L2 2364 2720 -594 269 318 26 56 chr9 71163621 71163898 -71107546 + L2 LINE L2 2903 3238 -75 279 272 0 12 chr9 71163973 71164054 -71107390 + MIR SINE MIR 151 230 -32 1590 193 0 29 chr9 71164300 71164611 -71106833 - AluJo SINE Alu -9 303 2 1622 292 116 44 chr9 71165233 71168597 -71102847 - L1ME3 LINE L1 -208 6023 2418 1506 200 163 9 chr9 71168651 71169081 -71102363 - LTR54B LTR ERV1 -2 496 1 345 297 62 48 chr9 71169092 71169301 -71102143 - L1ME3 LINE L1 -4037 2359 2148 453 276 40 92 chr9 71169931 71170085 -71101359 - L1ME3 LINE L1 -4906 1299 1169 1323 111 0 79 chr9 71170085 71170258 -71101186 - L1MA4 LINE L1 -6 6294 6146 2173 117 0 25 chr9 71170258 71170574 -71100870 - AluSx SINE Alu -4 308 1 1323 111 0 79 chr9 71170574 71170652 -71100792 - L1MA4 LINE L1 -154 6146 6063 453 276 40 92 chr9 71170652 71170823 -71100621 - L1ME3 LINE L1 -5036 1169 991 216 0 0 0 chr9 71170977 71171001 -71100443 + (TC)n Simple_repeat Simple_repeat 1 24 0 560 349 92 48 chr9 71171016 71171595 -71099849 - L1ME3 LINE L1 -5460 745 142 223 277 0 0 chr9 71171738 71171785 -71099659 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 45 45 0 0 chr9 71171933 71171999 -71099445 + AT_rich Low_complexity Low_complexity 1 66 0 27 29 0 0 chr9 71172077 71172111 -71099333 + AT_rich Low_complexity Low_complexity 1 34 0 315 294 62 68 chr9 71172292 71172438 -71099006 + MIR SINE MIR 44 188 -74 216 176 27 40 chr9 71172974 71173048 -71098396 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 389 103 35 52 chr9 71173056 71173230 -71098214 + (TATAA)n Simple_repeat Simple_repeat 5 175 0 395 318 209 5 chr9 71173239 71173450 -71097994 - L2 LINE L2 -255 3058 2805 327 243 0 0 chr9 71175002 71175072 -71096372 - MER69 DNA AcHobo -1078 148 79 551 274 117 6 chr9 71175983 71176162 -71095282 - MIR SINE MIR -29 233 35 1847 176 66 8 chr9 71176387 71176557 -71094887 + L1MB2 LINE L1 5638 5797 -374 2190 87 19 26 chr9 71176557 71176868 -71094576 + AluY SINE Alu 1 309 -2 1847 176 66 8 chr9 71176868 71177060 -71094384 + L1MB2 LINE L1 5797 6021 -150 442 91 0 0 chr9 71177064 71177130 -71094314 + L1MB2 LINE L1 6099 6164 -7 1129 31 0 59 chr9 71177723 71178106 -71093338 + (TTTC)n Simple_repeat Simple_repeat 1 540 0 2045 113 4 0 chr9 71178107 71178381 -71093063 - AluSp SINE Alu -38 275 1 304 257 196 0 chr9 71178631 71178779 -71092665 - L2 LINE L2 -14 3299 3123 761 318 65 65 chr9 71179058 71179521 -71091923 - L2 LINE L2 -4 3309 2847 267 31 0 0 chr9 71179617 71179649 -71091795 + (TTTTC)n Simple_repeat Simple_repeat 5 36 0 2081 117 3 7 chr9 71180065 71180365 -71091079 - AluSx SINE Alu -13 299 1 261 0 0 0 chr9 71181093 71181122 -71090322 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 846 294 101 71 chr9 71183058 71184019 -71087425 - L1ME3A LINE L1 -219 5951 5020 2365 85 0 0 chr9 71184019 71184314 -71087130 + AluY SINE Alu 1 295 -16 846 294 101 71 chr9 71184314 71185168 -71086276 - L1ME3A LINE L1 -1150 5020 4080 1876 128 0 7 chr9 71187010 71187284 -71084160 + AluSx SINE Alu 27 298 -14 21 0 0 0 chr9 71187458 71187479 -71083965 + AT_rich Low_complexity Low_complexity 1 21 0 25 83 0 0 chr9 71187787 71187847 -71083597 + AT_rich Low_complexity Low_complexity 1 60 0 279 288 106 8 chr9 71188730 71188862 -71082582 - L2 LINE L2 -3 3310 3166 700 169 6 27 chr9 71189453 71189636 -71081808 + GA-rich Low_complexity Low_complexity 1 179 0 324 0 0 0 chr9 71190027 71190063 -71081381 + (TG)n Simple_repeat Simple_repeat 2 37 0 247 303 45 52 chr9 71190784 71190939 -71080505 - MER102b DNA MER1_type 0 341 188 839 296 86 37 chr9 71190956 71191439 -71080005 + MLT1F1 LTR MaLR 12 519 -48 303 200 24 59 chr9 71191467 71191552 -71079892 - MER102b DNA MER1_type -184 157 76 7708 77 11 13 chr9 71193868 71195751 -71075693 + L1PA7 LINE L1 4250 6154 0 286 287 100 33 chr9 71195900 71196314 -71075130 + L1ME2 LINE L1 646 1031 -5174 563 295 116 21 chr9 71196319 71196699 -71074745 + L1ME2 LINE L1 3974 4389 -1826 331 317 78 34 chr9 71196806 71197308 -71074136 + L1ME2 LINE L1 4526 5049 -1166 * 4548 218 63 67 chr9 71197302 71198005 -71073439 + L1MC4a LINE L1 5901 5155 -1204 2165 125 76 15 chr9 71198005 71198348 -71073096 + THE1B LTR MaLR 1 364 0 4548 218 63 67 chr9 71198348 71199471 -71071973 + L1MC4a LINE L1 5154 6280 -79 247 185 98 11 chr9 71199497 71199589 -71071855 + L1P LINE L1 5163 5262 -884 * 806 256 125 103 chr9 71199580 71200218 -71071226 + L1MC4a LINE L1 5254 5905 -1903 3157 256 89 53 chr9 71200223 71201664 -71069780 + L1MC4a LINE L1 5494 6882 -926 333 0 0 0 chr9 71201664 71201701 -71069743 + (ATTAG)n Simple_repeat Simple_repeat 3 39 0 3157 256 89 53 chr9 71201701 71201818 -71069626 + L1MC4a LINE L1 6882 6993 -815 2185 119 0 3 chr9 71201818 71202113 -71069331 + AluSx SINE Alu 1 294 -18 3157 256 89 53 chr9 71202113 71202261 -71069183 + L1MC4a LINE L1 6993 7262 -546 1696 220 65 34 chr9 71202258 71202568 -71068876 + L1ME2 LINE L1 5080 5379 -854 * 6480 62 5 0 chr9 71202568 71203395 -71068049 + L1PA7 LINE L1 5317 6147 -7 1696 220 65 34 chr9 71203395 71203886 -71067558 + L1ME2 LINE L1 5379 5926 -307 263 279 70 0 chr9 71204028 71204114 -71067330 - MER69 DNA AcHobo -14 2512 2421 646 151 50 17 chr9 71205284 71205403 -71066041 + FLAM_C SINE Alu 1 123 -10 219 111 42 97 chr9 71205414 71205486 -71065958 + (TTAAA)n Simple_repeat Simple_repeat 3 70 0 22 35 0 0 chr9 71205844 71205873 -71065571 + AT_rich Low_complexity Low_complexity 1 29 0 199 250 19 102 chr9 71206028 71206136 -71065308 - MIR SINE MIR -43 219 121 1811 133 18 21 chr9 71206189 71206521 -71064923 - AluSx SINE Alu 0 331 1 306 0 0 0 chr9 71207619 71207653 -71063791 + (TA)n Simple_repeat Simple_repeat 2 35 0 650 333 93 34 chr9 71207978 71208452 -71062992 - L3 LINE CR1 -393 1184 683 384 273 9 0 chr9 71209165 71209294 -71062150 + L1ME3 LINE L1 5737 5871 -293 2543 65 0 0 chr9 71209517 71209825 -71061619 - AluY SINE Alu -3 308 1 376 351 134 22 chr9 71210726 71211039 -71060405 + L2 LINE L2 2922 3269 -3 181 226 38 19 chr9 71211178 71211231 -71060213 + MIR SINE MIR 77 130 -78 360 238 48 19 chr9 71211552 71211657 -71059787 - MIR3 SINE MIR -94 114 7 259 333 18 54 chr9 71212734 71212813 -71058631 + MLT1I LTR MaLR 6 86 -323 1745 233 38 4 chr9 71212813 71213263 -71058181 + MLT1C LTR MaLR 1 465 -2 259 333 18 54 chr9 71213263 71213351 -71058093 + MLT1I LTR MaLR 86 167 -242 23 54 0 0 chr9 71213528 71213565 -71057879 + AT_rich Low_complexity Low_complexity 1 37 0 1220 89 132 0 chr9 71213841 71214031 -71057413 - L1PA13 LINE L1 -3 6160 5946 519 296 95 31 chr9 71214131 71214344 -71057100 + MIR SINE MIR 38 262 0 254 141 47 62 chr9 71214466 71214530 -71056914 - HERVH48 LTR ERV1 -5298 1356 1294 485 298 45 34 chr9 71217380 71217558 -71053886 + MIR SINE MIR 32 211 -51 349 348 26 0 chr9 71217556 71217671 -71053773 + L2 LINE L2 3188 3305 -8 * 219 196 0 20 chr9 71217724 71217775 -71053669 + (TTA)n Simple_repeat Simple_repeat 3 52 0 217 260 156 26 chr9 71217884 71217961 -71053483 + MIR SINE MIR 31 117 -91 302 227 0 34 chr9 71218553 71218641 -71052803 + L1MC5 LINE L1 7839 7923 -38 1943 113 0 0 chr9 71218641 71218898 -71052546 - AluSx SINE Alu -16 296 40 326 299 72 60 chr9 71219586 71219753 -71051691 - MIR3 SINE MIR -23 185 17 184 240 20 40 chr9 71220999 71221049 -71050395 - L2 LINE L2 -863 2451 2403 503 324 85 52 chr9 71221305 71221577 -71049867 + L2 LINE L2 2989 3269 -3 307 289 134 21 chr9 71223310 71223452 -71047992 + MIR SINE MIR 4 161 -101 * 536 252 162 40 chr9 71223422 71223700 -71047744 - L2 LINE L2 -5 3308 2997 26 30 0 0 chr9 71224339 71224372 -71047072 + AT_rich Low_complexity Low_complexity 1 33 0 332 339 9 0 chr9 71225586 71225695 -71045749 + (TATATG)n Simple_repeat Simple_repeat 3 112 0 518 275 130 24 chr9 71226568 71227106 -71044338 + L1M4 LINE L1 2878 3472 -2674 979 114 0 78 chr9 71227165 71227331 -71044113 - AluSc SINE Alu -22 287 135 12288 128 30 21 chr9 71227427 71229480 -71041964 + Tigger1 DNA MER2_type 1 2072 -346 5325 98 36 35 chr9 71229490 71230350 -71041094 - L1PA11 LINE L1 -4 6170 5310 765 176 19 1 chr9 71230332 71230488 -71040956 + L1PA15-16 LINE L1 2098 2255 -3891 * 13500 151 38 13 chr9 71230522 71231745 -71039699 + L1PA15-16 LINE L1 2733 3924 -2222 2261 108 7 0 chr9 71231745 71232052 -71039392 + AluSx SINE Alu 1 309 -3 13500 151 38 13 chr9 71232052 71233335 -71038109 + L1PA15-16 LINE L1 3924 5302 -844 2165 116 88 0 chr9 71233336 71233665 -71037779 + Tigger1 DNA MER2_type 2061 2418 0 243 294 95 16 chr9 71234160 71234286 -71037158 + MIR SINE MIR 124 259 -3 375 175 0 158 chr9 71235273 71235393 -71036051 - L1ME3A LINE L1 -9 6161 6061 855 189 52 5 chr9 71235440 71235652 -71035792 - L1ME3A LINE L1 -213 5957 5736 731 302 28 16 chr9 71235651 71236057 -71035387 + L1ME LINE L1 5173 5585 -579 * 217 348 0 0 chr9 71236177 71236246 -71035198 - L2 LINE L2 -4 3268 3200 23 33 0 0 chr9 71236500 71236530 -71034914 + AT_rich Low_complexity Low_complexity 1 30 0 297 340 160 19 chr9 71237164 71237320 -71034124 - MER5B DNA MER1_type 0 178 1 201 343 57 36 chr9 71238859 71238999 -71032445 - L2 LINE L2 -215 3057 2915 209 203 145 0 chr9 71239290 71239359 -71032085 - MIR SINE MIR -82 180 102 397 336 72 1 chr9 71239733 71239904 -71031540 + MIR SINE MIR 12 197 -11 234 280 0 0 chr9 71240837 71240887 -71030557 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 1173 288 51 3 chr9 71240940 71241312 -71030132 + LTR33 LTR ERVL 2 391 -130 355 276 17 17 chr9 71243082 71243198 -71028246 + Charlie8 DNA MER1_type 73 188 -2229 1986 137 16 23 chr9 71243351 71243657 -71027787 - AluSx SINE Alu -5 307 4 240 324 9 28 chr9 71243672 71243780 -71027664 - L2 LINE L2 -782 2532 2427 2041 122 3 14 chr9 71243822 71244117 -71027327 + AluSc SINE Alu 1 292 -17 23 54 0 0 chr9 71245280 71245317 -71026127 + AT_rich Low_complexity Low_complexity 1 37 0 201 224 0 41 chr9 71245354 71245403 -71026041 + MIR SINE MIR 216 262 0 21 0 0 0 chr9 71245418 71245439 -71026005 + AT_rich Low_complexity Low_complexity 1 21 0 5344 123 36 5 chr9 71246714 71247624 -71023820 + L1PB1 LINE L1 5215 6150 -1 222 244 22 33 chr9 71247738 71247828 -71023616 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 310 362 22 45 chr9 71248321 71248545 -71022899 - L2 LINE L2 -2 3311 3093 530 286 25 31 chr9 71248809 71248970 -71022474 - MIR SINE MIR -17 245 86 325 161 16 0 chr9 71249353 71249415 -71022029 + MER116 DNA Mariner 18 80 0 419 294 73 19 chr9 71252577 71252774 -71018670 + MER20B DNA MER1_type 4 210 -9 2174 96 0 17 chr9 71254333 71254634 -71016810 + AluY SINE Alu 2 297 -14 283 275 108 33 chr9 71255895 71256015 -71015429 + MIR SINE MIR 64 192 -70 2115 130 138 5 chr9 71256046 71256424 -71015020 + MSTA LTR MaLR 1 428 0 355 269 132 16 chr9 71256440 71256622 -71014822 + L1ME4a LINE L1 5283 5485 -2323 394 234 126 38 chr9 71256657 71256896 -71014548 + L1ME4a LINE L1 5595 5854 -267 180 324 133 0 chr9 71256906 71257011 -71014433 - L2 LINE L2 -21 3292 3174 2376 92 0 10 chr9 71257168 71257482 -71013962 - AluY SINE Alu 0 311 1 433 306 97 0 chr9 71257567 71257711 -71013733 + MIR3 SINE MIR 21 178 -30 453 195 0 0 chr9 71257834 71257911 -71013533 - AluJ/FLAM SINE Alu -234 78 2 38 75 0 0 chr9 71258219 71258299 -71013145 + AT_rich Low_complexity Low_complexity 1 80 0 2174 136 0 0 chr9 71258569 71258871 -71012573 + AluSx SINE Alu 3 304 -8 243 369 99 31 chr9 71260555 71260777 -71010667 - L2 LINE L2 0 3272 3036 1113 217 9 0 chr9 71260780 71261001 -71010443 + MER58A DNA MER1_type 2 224 0 507 345 71 21 chr9 71261156 71261394 -71010050 - MIR SINE MIR 0 262 13 312 347 103 54 chr9 71262097 71262803 -71008641 + L2 LINE L2 2471 3258 -14 1048 86 0 0 chr9 71263645 71263773 -71007671 + AluSc SINE Alu 1 128 -181 38571 81 6 7 chr9 71264762 71270910 -71000534 + L1PA6 LINE L1 11 6153 -1 471 311 80 52 chr9 71270921 71271172 -71000272 - MIR SINE MIR -4 258 1 964 184 164 82 chr9 71271211 71271576 -70999868 + MSTD LTR MaLR 1 395 -1 21 0 0 0 chr9 71272454 71272475 -70998969 + AT_rich Low_complexity Low_complexity 1 21 0 1446 225 119 30 chr9 71272557 71273020 -70998424 + MLT1D LTR MaLR 1 504 -1 24 53 0 0 chr9 71273954 71273992 -70997452 + AT_rich Low_complexity Low_complexity 1 38 0 2821 221 99 16 chr9 71274348 71275118 -70996326 - L1MB7 LINE L1 -11 6153 5329 21 0 0 0 chr9 71275750 71275771 -70995673 + AT_rich Low_complexity Low_complexity 1 21 0 398 196 29 10 chr9 71275871 71275973 -70995471 - LTR67 LTR ERVL -20 537 434 193 146 0 52 chr9 71276384 71276480 -70994964 + (TA)n Simple_repeat Simple_repeat 2 92 0 242 253 23 0 chr9 71276508 71276595 -70994849 - L1MC4 LINE L1 -1340 6702 6614 579 95 11 0 chr9 71277311 71277406 -70994038 + L1MB3 LINE L1 6085 6180 -3 459 164 29 21 chr9 71278060 71278163 -70993281 + MER34C LTR ERV1 11 136 -449 394 196 21 0 chr9 71278165 71278262 -70993182 + GA-rich Low_complexity Low_complexity 2 100 0 1101 150 0 3 chr9 71278264 71278624 -70992820 + (GA)n Simple_repeat Simple_repeat 1 360 0 226 346 0 0 chr9 71278626 71278707 -70992737 + GA-rich Low_complexity Low_complexity 1 81 0 1571 206 17 12 chr9 71279132 71279477 -70991967 + L1PA16 LINE L1 5820 6166 0 2108 165 54 43 chr9 71279480 71279688 -70991756 + MER34B LTR ERV1 76 280 -285 1535 191 88 0 chr9 71279688 71280007 -70991437 - MER7A DNA MER2_type 0 346 2 2108 165 54 43 chr9 71280007 71280283 -70991161 + MER34B LTR ERV1 280 565 0 833 228 56 0 chr9 71281815 71282012 -70989432 + MER34B LTR ERV1 79 286 -279 2395 313 116 14 chr9 71282660 71284301 -70987143 + L2 LINE L2 1485 3298 -15 227 380 106 0 chr9 71284430 71284609 -70986835 - MIR SINE MIR -31 231 34 289 239 250 0 chr9 71284636 71284724 -70986720 + MER45 DNA AcHobo 1 110 -1471 284 246 0 0 chr9 71284723 71284780 -70986664 + MER45 DNA AcHobo 1516 1572 -9 * 833 217 5 21 chr9 71285354 71285543 -70985901 + MER5A DNA MER1_type 2 187 -2 2788 133 11 11 chr9 71285568 71286028 -70985416 + L1PA16 LINE L1 5706 6165 -1 2093 116 0 13 chr9 71286184 71286486 -70984958 - AluSq SINE Alu -10 303 6 237 180 20 20 chr9 71286499 71286549 -70984895 - MER5B DNA MER1_type -124 54 5 416 156 39 0 chr9 71286991 71287068 -70984376 + AluJ/FRAM SINE Alu 232 311 -1 599 268 180 0 chr9 71287404 71287587 -70983857 + MIR SINE MIR 18 233 -29 1084 267 53 32 chr9 71287891 71288269 -70983175 + L2 LINE L2 2837 3222 -91 2277 103 3 0 chr9 71288627 71288919 -70982525 + AluSg SINE Alu 1 293 -17 226 341 123 18 chr9 71289745 71289915 -70981529 + MIR SINE MIR 53 240 -22 355 325 42 0 chr9 71290004 71290124 -70981320 - L2 LINE L2 -1 3271 3147 216 0 0 0 chr9 71290419 71290443 -70981001 + (T)n Simple_repeat Simple_repeat 1 24 0 2690 92 19 0 chr9 71291286 71291654 -70979790 + THE1C LTR MaLR 1 375 0 2168 107 0 10 chr9 71291969 71292260 -70979184 + AluSx SINE Alu 1 288 -24 1652 199 73 6 chr9 71292285 71292627 -70978817 + MLT1A1 LTR MaLR 1 365 0 23 54 0 0 chr9 71293077 71293114 -70978330 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr9 71293136 71293172 -70978272 + AT_rich Low_complexity Low_complexity 1 36 0 216 336 171 20 chr9 71293599 71293745 -70977699 - L3b LINE CR1 -11 1572 1405 2125 215 36 34 chr9 71293782 71294059 -70977385 + MLT1D LTR MaLR 1 281 -224 2488 71 2 99 chr9 71294059 71294386 -70977058 + THE1A LTR MaLR 1 285 -70 2233 96 3 10 chr9 71294386 71294698 -70976746 - AluSg SINE Alu 0 310 1 2488 71 2 99 chr9 71294698 71294763 -70976681 + THE1A LTR MaLR 285 355 0 2125 215 36 34 chr9 71294763 71294983 -70976461 + MLT1D LTR MaLR 281 499 -6 690 202 12 18 chr9 71295236 71295404 -70976040 + L1MC5 LINE L1 7042 7208 -753 1247 204 41 56 chr9 71295416 71295684 -70975760 + MER58B DNA MER1_type 27 291 -2129 2174 89 26 0 chr9 71295684 71295986 -70975458 + AluSq SINE Alu 1 310 -3 1247 204 41 56 chr9 71295986 71296036 -70975408 + MER58B DNA MER1_type 291 340 -1 1239 237 126 58 chr9 71296093 71296491 -70974953 + L1MC5 LINE L1 7275 7727 -234 1990 144 0 10 chr9 71296491 71296789 -70974655 + AluJb SINE Alu 9 303 -9 1239 237 126 58 chr9 71296789 71296977 -70974467 + L1MC5 LINE L1 7727 7901 -60 212 282 73 36 chr9 71297477 71297587 -70973857 - MIR SINE MIR -36 226 113 2235 77 0 11 chr9 71297934 71298242 -70973202 + AluY SINE Alu 1 305 0 308 263 84 11 chr9 71298321 71298416 -70973028 - MIR SINE MIR -132 130 29 208 345 0 0 chr9 71298792 71298850 -70972594 + L2 LINE L2 3208 3265 -7 2256 113 0 0 chr9 71299726 71300026 -70971418 - AluSc SINE Alu -9 300 1 310 198 44 0 chr9 71300588 71300679 -70970765 + L1MB3 LINE L1 6087 6181 -2 2355 94 0 0 chr9 71301994 71302292 -70969152 + AluSc SINE Alu 1 298 -11 332 299 132 69 chr9 71304826 71305334 -70966110 + L1M2 LINE L1 837 1376 -5473 512 179 86 86 chr9 71305547 71305698 -70965746 - MER5B DNA MER1_type 0 178 28 323 250 0 30 chr9 71308208 71308308 -70963136 + HsTC2 DNA Tc2 1 97 -1801 327 292 91 50 chr9 71308430 71308649 -70962795 - L3 LINE CR1 -146 1431 1204 356 172 35 26 chr9 71309236 71309352 -70962092 + CT-rich Low_complexity Low_complexity 1 117 0 2542 236 29 31 chr9 71309798 71310496 -70960948 + L1ME3A LINE L1 5470 6165 -5 283 333 58 19 chr9 71310705 71310861 -70960583 - MIR SINE MIR -96 166 5 259 202 53 0 chr9 71310869 71310963 -70960481 + (TA)n Simple_repeat Simple_repeat 2 100 0 787 260 143 5 chr9 71314063 71314286 -70957158 - MIR SINE MIR -8 254 1 423 338 81 5 chr9 71314315 71314513 -70956931 - MIR SINE MIR -20 242 30 229 356 8 42 chr9 71314605 71314723 -70956721 - MIR SINE MIR -58 150 37 1500 170 53 28 chr9 71314939 71315138 -70956306 - AluJb SINE Alu 0 312 119 207 100 0 0 chr9 71315138 71315168 -70956276 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1500 170 53 28 chr9 71315168 71315282 -70956162 - AluJb SINE Alu -193 119 9 237 321 0 0 chr9 71315378 71315459 -70955985 + MIR SINE MIR 151 231 -31 1019 199 136 7 chr9 71315557 71315844 -70955600 - MER33 DNA MER1_type 0 324 1 207 0 0 0 chr9 71316360 71316383 -70955061 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 276 53 0 0 chr9 71317406 71317444 -70954000 + (TG)n Simple_repeat Simple_repeat 2 39 0 288 327 16 70 chr9 71318391 71318467 -70952977 + MIR3 SINE MIR 3 82 -180 2686 100 16 3 chr9 71318467 71318837 -70952607 - THE1C LTR MaLR 0 375 1 288 327 16 70 chr9 71318837 71318949 -70952495 + MIR3 SINE MIR 82 186 -76 225 0 0 0 chr9 71319426 71319451 -70951993 + (CA)n Simple_repeat Simple_repeat 1 25 0 206 276 35 0 chr9 71320371 71320429 -70951015 - MIR SINE MIR 0 262 203 1030 226 13 4 chr9 71320467 71320693 -70950751 - MIR SINE MIR -1 261 34 234 365 40 0 chr9 71320842 71320916 -70950528 + L2 LINE L2 3150 3226 -46 314 300 0 0 chr9 71321218 71321298 -70950146 - L2 LINE L2 -4 3268 3189 201 74 0 0 chr9 71321884 71321911 -70949533 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 992 218 32 48 chr9 71322529 71322841 -70948603 + L1MD2 LINE L1 6051 6357 -2 22 56 0 0 chr9 71323355 71323391 -70948053 + AT_rich Low_complexity Low_complexity 1 36 0 192 125 0 0 chr9 71325302 71325334 -70946110 + (TC)n Simple_repeat Simple_repeat 1 32 0 631 209 14 0 chr9 71325421 71325560 -70945884 - L1MD2 LINE L1 -19 6340 6200 379 227 31 0 chr9 71325563 71325660 -70945784 - L1MD2 LINE L1 -213 6146 6047 272 170 160 30 chr9 71325658 71325758 -70945686 - L1MDa LINE L1 -4230 2310 2198 * 1425 221 110 14 chr9 71325761 71326244 -70945200 - L1MDa LINE L1 -4381 2159 1631 3813 207 55 12 chr9 71326249 71327651 -70943793 - L1MB8 LINE L1 -3 6986 5512 2494 46 23 7 chr9 71327651 71327957 -70943487 - AluY SINE Alu 0 311 1 3303 249 32 17 chr9 71327958 71328758 -70942686 - L1MB8 LINE L1 -2393 4564 3737 2244 83 3 26 chr9 71328758 71329060 -70942384 - AluSg SINE Alu -15 295 1 3303 249 32 17 chr9 71329060 71329467 -70941977 - L1MB8 LINE L1 -3220 3737 3338 1617 239 100 77 chr9 71329466 71330494 -70940950 - L1MB8 LINE L1 -4571 2388 1330 * 399 251 127 33 chr9 71330511 71330810 -70940634 - LTR15 LTR ERV1 -11 482 156 2526 215 67 25 chr9 71331027 71331673 -70939771 - L1MB8 LINE L1 -5568 1291 619 1521 168 48 28 chr9 71331713 71332070 -70939374 - THE1C LTR MaLR -11 364 1 252 304 0 0 chr9 71332070 71332139 -70939305 - L1MB8 LINE L1 -6258 601 533 2298 218 81 20 chr9 71332139 71332844 -70938600 - L1MDa LINE L1 -4895 1645 898 1921 233 38 29 chr9 71332849 71333372 -70938072 - L1MDa LINE L1 -5996 544 17 262 306 75 50 chr9 71335284 71335439 -70936005 - MIR SINE MIR -56 206 48 745 307 31 31 chr9 71335439 71335693 -70935751 + MIR SINE MIR 1 254 -8 1853 179 3 0 chr9 71336750 71337040 -70934404 + AluJo SINE Alu 1 291 -21 197 270 16 16 chr9 71337277 71337340 -70934104 - L2 LINE L2 0 3313 3251 264 280 159 9 chr9 71337369 71337476 -70933968 + L2 LINE L2 3182 3304 -9 38 22 0 0 chr9 71338169 71338214 -70933230 + AT_rich Low_complexity Low_complexity 1 45 0 180 231 0 0 chr9 71338486 71338538 -70932906 + (CA)n Simple_repeat Simple_repeat 2 53 0 673 314 71 48 chr9 71338684 71339248 -70932196 + L2 LINE L2 2593 3164 -108 203 319 19 83 chr9 71339345 71339502 -70931942 + MIR SINE MIR 1 147 -115 2110 287 47 50 chr9 71339585 71340713 -70930731 - L2 LINE L2 0 3313 2190 180 271 0 0 chr9 71340722 71340770 -70930674 - L2 LINE L2 -75 3238 3191 506 284 18 83 chr9 71340834 71340943 -70930501 + MER5A DNA MER1_type 30 126 -63 1817 178 0 3 chr9 71340943 71341230 -70930214 - AluJo SINE Alu -23 289 4 506 284 18 83 chr9 71341230 71341289 -70930155 + MER5A DNA MER1_type 126 187 -2 2244 96 0 3 chr9 71342212 71342541 -70928903 - AluY SINE Alu 0 311 1 915 190 63 0 chr9 71342872 71343046 -70928398 - MER5A DNA MER1_type 0 189 5 275 260 65 0 chr9 71343147 71343224 -70928220 - MIR SINE MIR -40 222 141 233 180 0 33 chr9 71344088 71344149 -70927295 + GA-rich Low_complexity Low_complexity 2 60 0 812 204 45 0 chr9 71344962 71345119 -70926325 + MER5A DNA MER1_type 26 189 0 186 43 0 0 chr9 71345846 71345869 -70925575 + (AGTAG)n Simple_repeat Simple_repeat 3 25 0 246 32 0 0 chr9 71346269 71346300 -70925144 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 71 0 0 chr9 71346302 71346330 -70925114 + (GA)n Simple_repeat Simple_repeat 1 28 0 1609 191 17 7 chr9 71346592 71346891 -70924553 + AluJo SINE Alu 1 302 -10 258 32 0 0 chr9 71346891 71346922 -70924522 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 748 167 0 0 chr9 71348256 71348370 -70923074 + FLAM_A SINE Alu 4 117 -16 2243 100 0 3 chr9 71348756 71349085 -70922359 - AluY SINE Alu 0 311 1 915 190 63 0 chr9 71349416 71349590 -70921854 - MER5A DNA MER1_type 0 189 5 275 260 65 0 chr9 71349691 71349768 -70921676 - MIR SINE MIR -40 222 141 197 300 56 15 chr9 71350660 71350746 -70920698 + MIR SINE MIR 48 143 -65 847 214 48 24 chr9 71351108 71351314 -70920130 - MER20 DNA MER1_type -5 214 4 462 282 67 34 chr9 71351368 71351517 -70919927 + MIR3 SINE MIR 41 194 -14 3053 168 22 9 chr9 71351636 71352177 -70919267 + MER44D DNA MER2_type 2 604 -1 1833 195 23 21 chr9 71352866 71353250 -70918194 + L1MC1 LINE L1 231 615 -5811 530 147 24 147 chr9 71353253 71353423 -70918021 + L1MC1 LINE L1 573 721 -5705 * 3825 206 46 47 chr9 71353419 71356052 -70915392 + L1MC1 LINE L1 1272 3986 -2440 3662 225 136 125 chr9 71356121 71356826 -70914618 + L1M2c LINE L1 16 711 -6078 9702 27 10 0 chr9 71356826 71358762 -70912682 + L1PA3 LINE L1 4209 6152 -3 3662 225 136 125 chr9 71358762 71359663 -70911781 + L1M2c LINE L1 711 1600 -5189 2171 139 3 3 chr9 71359663 71359973 -70911471 + AluSx SINE Alu 1 310 -2 3662 225 136 125 chr9 71359973 71360234 -70911210 + L1M2c LINE L1 1600 1857 -4932 2160 121 0 7 chr9 71360234 71360532 -70910912 - AluSq SINE Alu -17 296 1 3662 225 136 125 chr9 71360532 71360773 -70910671 + L1M2c LINE L1 1857 2150 -4639 5252 185 47 27 chr9 71360781 71361357 -70910087 + L1MC1 LINE L1 4614 5177 -1436 2561 104 16 21 chr9 71361357 71361742 -70909702 + L1PA11 LINE L1 5792 6174 0 483 100 0 0 chr9 71361745 71361815 -70909629 + (TA)n Simple_repeat Simple_repeat 1 70 0 5252 185 47 27 chr9 71361815 71363202 -70908242 + L1MC1 LINE L1 5178 6612 -1 207 0 0 0 chr9 71363305 71363328 -70908116 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 548 222 0 0 chr9 71363331 71363430 -70908014 - FRAM SINE Alu -18 158 60 357 316 45 34 chr9 71365720 71365897 -70905547 + MER5A DNA MER1_type 11 189 0 367 235 22 9 chr9 71367459 71367585 -70903859 + L1MDa LINE L1 1777 2001 -900 2216 111 44 39 chr9 71367879 71368241 -70903203 + THE1B LTR MaLR 1 364 0 7445 113 39 3 chr9 71368415 71369542 -70901902 - HUERS-P3b LTR ERV1 -183 7235 6069 1165 267 49 71 chr9 71370634 71370660 -70900784 + L1ME LINE L1 117 142 -5928 1825 131 41 77 chr9 71370660 71371049 -70900395 - THE1C LTR MaLR 0 375 1 1165 267 49 71 chr9 71371049 71371681 -70899763 + L1ME LINE L1 142 760 -5310 490 240 8 0 chr9 71371692 71371817 -70899627 - MER115 DNA AcHobo -67 626 501 2791 154 16 25 chr9 71371817 71372368 -70899076 + L1MA8 LINE L1 5519 6064 -227 192 40 0 0 chr9 71372394 71372419 -70899025 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 4227 81 9 0 chr9 71372419 71372976 -70898468 - L1PA6 LINE L1 -18 6136 5575 910 133 82 0 chr9 71373001 71373197 -70898247 + L1MA8 LINE L1 6076 6287 -4 528 342 37 36 chr9 71373224 71373676 -70897768 - MER115 DNA AcHobo -182 511 3 656 189 61 0 chr9 71373708 71373840 -70897604 + MIR SINE MIR 53 192 -70 517 297 89 15 chr9 71374123 71374325 -70897119 - MIR SINE MIR -11 251 35 249 108 0 0 chr9 71374628 71374665 -70896779 + (GA)n Simple_repeat Simple_repeat 1 37 0 429 264 50 82 chr9 71375348 71375507 -70895937 + L2 LINE L2 3119 3272 0 231 301 41 57 chr9 71375909 71376032 -70895412 - L2 LINE L2 -2 3311 3191 2454 45 3 7 chr9 71376569 71376878 -70894566 + L1PA7 LINE L1 5845 6152 -2 2179 72 4 0 chr9 71378082 71378360 -70893084 + AluY SINE Alu 1 279 -32 292 125 0 25 chr9 71378360 71378440 -70893004 + (GA)n Simple_repeat Simple_repeat 1 78 0 383 324 9 0 chr9 71379852 71379957 -70891487 - L2 LINE L2 -19 3253 3148 254 279 196 38 chr9 71380337 71380495 -70890949 - MIR SINE MIR -67 195 13 195 184 0 0 chr9 71381285 71381323 -70890121 + T-rich Low_complexity Low_complexity 3 40 0 287 256 0 13 chr9 71382148 71382226 -70889218 - MLT1K LTR MaLR -324 264 188 1575 171 0 4 chr9 71382314 71382595 -70888849 + L1MB3 LINE L1 5622 5901 -282 244 120 80 0 chr9 71382593 71382643 -70888801 + L1MB2 LINE L1 6111 6164 -7 * 375 23 0 0 chr9 71382919 71382963 -70888481 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr9 71383072 71383094 -70888350 + AT_rich Low_complexity Low_complexity 1 22 0 532 320 34 31 chr9 71383122 71383416 -70888028 + L1ME3A LINE L1 5597 5891 -279 301 230 108 0 chr9 71385858 71386006 -70885438 + Charlie1 DNA MER1_type 2477 2640 -121 355 328 32 11 chr9 71386470 71386656 -70884788 + MER117 DNA MER1_type 5 194 -3 2137 131 0 26 chr9 71389728 71390034 -70881410 + AluSx SINE Alu 1 298 -14 449 288 95 41 chr9 71390097 71390340 -70881104 + MLT1K LTR MaLR 315 570 -18 219 43 43 22 chr9 71391218 71391264 -70880180 + (TA)n Simple_repeat Simple_repeat 2 48 0 2720 147 47 27 chr9 71391420 71392085 -70879359 + L1MA5 LINE L1 5570 6300 0 905 223 16 5 chr9 71392133 71392321 -70879123 - MIR SINE MIR -21 241 52 233 174 22 0 chr9 71392575 71392621 -70878823 + L2 LINE L2 3267 3313 0 707 298 66 22 chr9 71392725 71392953 -70878491 + MIR SINE MIR 25 262 0 441 0 0 0 chr9 71394797 71394846 -70876598 + (TG)n Simple_repeat Simple_repeat 1 49 0 2755 136 45 45 chr9 71394981 71395519 -70875925 + L1PA16 LINE L1 5628 6165 -1 707 223 5 30 chr9 71395632 71395829 -70875615 - Charlie2a DNA MER1_type -1204 1658 1467 234 289 29 19 chr9 71395905 71396009 -70875435 - Charlie2b DNA MER1_type -2122 660 556 375 294 9 0 chr9 71396011 71396120 -70875324 - Charlie2b DNA MER1_type -2555 307 198 463 248 30 23 chr9 71396120 71396253 -70875191 - MER94 DNA DNA 0 134 1 854 172 0 8 chr9 71396253 71396387 -70875057 + AluJo SINE Alu 2 134 -178 2343 97 0 0 chr9 71396388 71396677 -70874767 + AluSq SINE Alu 1 289 -24 373 219 18 0 chr9 71396677 71396791 -70874653 + (TA)n Simple_repeat Simple_repeat 1 116 0 275 253 76 28 chr9 71397724 71397857 -70873587 + MIR SINE MIR 36 172 -64 196 317 77 29 chr9 71398312 71398416 -70873028 + MER5B DNA MER1_type 44 152 -26 368 269 85 8 chr9 71398767 71398897 -70872547 - MER91C DNA MER1_type 0 140 1 222 282 176 21 chr9 71400379 71400521 -70870923 - MIR SINE MIR -42 166 3 667 278 0 29 chr9 71400816 71400989 -70870455 - MER5B DNA MER1_type -10 168 1 2160 103 20 10 chr9 71402643 71402944 -70868500 + AluSg SINE Alu 1 304 -6 1353 193 61 47 chr9 71404350 71404646 -70866798 + AluJb SINE Alu 1 300 -12 1815 168 7 7 chr9 71405081 71405384 -70866060 + AluJb SINE Alu 1 303 -9 1294 121 5 21 chr9 71407090 71407280 -70864164 + AluSg/x SINE Alu 120 306 -4 21 57 0 0 chr9 71408734 71408769 -70862675 + AT_rich Low_complexity Low_complexity 1 35 0 206 216 0 0 chr9 71409115 71409152 -70862292 - MER91 DNA MER1_type 0 190 154 222 222 0 0 chr9 71409154 71409208 -70862236 + (CA)n Simple_repeat Simple_repeat 1 54 0 1012 141 109 0 chr9 71410412 71410604 -70860840 + L1PA15 LINE L1 5952 6164 -1 243 262 225 8 chr9 71410620 71410887 -70860557 + L1ME4a LINE L1 5769 6093 -28 23 54 0 0 chr9 71411071 71411108 -70860336 + AT_rich Low_complexity Low_complexity 1 37 0 2177 95 0 20 chr9 71413881 71414186 -70857258 - AluSq SINE Alu -14 299 1 285 326 56 21 chr9 71414444 71414588 -70856856 - MIR3 SINE MIR -41 167 19 1310 273 75 21 chr9 71414628 71415108 -70856336 - MLT1E LTR MaLR -30 563 58 189 0 0 0 chr9 71415350 71415371 -70856073 + (TTG)n Simple_repeat Simple_repeat 2 22 0 189 211 114 61 chr9 71415697 71415811 -70855633 + MIR SINE MIR 78 197 -65 203 346 0 0 chr9 71416119 71416200 -70855244 + (CATATA)n Simple_repeat Simple_repeat 1 81 0 353 292 167 35 chr9 71416569 71416880 -70854564 - L1MC4a LINE L1 -394 5727 5551 25 31 0 0 chr9 71417165 71417197 -70854247 + AT_rich Low_complexity Low_complexity 1 32 0 459 296 34 23 chr9 71418268 71418444 -70853000 - MIR SINE MIR -27 235 58 22 35 0 0 chr9 71418830 71418859 -70852585 + AT_rich Low_complexity Low_complexity 1 29 0 2368 104 13 0 chr9 71419289 71419598 -70851846 - AluSp SINE Alu 0 313 1 704 294 39 86 chr9 71420232 71420640 -70850804 - L2 LINE L2 -15 3257 2869 423 154 136 18 chr9 71420978 71421088 -70850356 - MER119 DNA MER1_type -1 582 460 673 220 16 75 chr9 71421092 71421173 -70850271 - MER119 DNA MER1_type -391 192 108 2382 63 0 23 chr9 71421173 71421476 -70849968 - AluY SINE Alu -15 296 1 673 220 16 75 chr9 71421476 71421580 -70849864 - MER119 DNA MER1_type -475 108 18 400 285 118 25 chr9 71421622 71421945 -70849499 + LTR33A LTR ERVL 4 356 -167 2094 149 50 22 chr9 71421990 71422443 -70849001 + MLT1C LTR MaLR 10 465 -2 1235 231 148 21 chr9 71422466 71422898 -70848546 + MLT1F1 LTR MaLR 81 567 0 328 283 166 0 chr9 71422899 71423044 -70848400 + LTR33A LTR ERVL 353 521 -2 303 354 101 6 chr9 71425496 71425674 -70845770 + MIR SINE MIR 19 213 -49 3355 85 15 9 chr9 71426071 71426532 -70844912 + MER4C LTR ERV1 2 465 0 281 279 44 44 chr9 71426751 71426909 -70844535 + L1M4b LINE L1 44 201 -6658 1730 270 32 47 chr9 71427640 71428957 -70842487 + L1M4b LINE L1 1318 2745 -4393 2015 169 53 29 chr9 71429359 71429815 -70841629 + MLT1C LTR MaLR 1 467 0 1496 216 22 25 chr9 71430398 71430759 -70840685 + MLT2D LTR ERVL 14 373 -41 220 158 35 0 chr9 71430760 71430817 -70840627 + (TA)n Simple_repeat Simple_repeat 1 59 0 273 182 0 18 chr9 71430831 71430844 -70840600 + MLT2D LTR ERVL 467 479 -41 291 28 0 0 chr9 71430844 71430880 -70840564 + (CA)n Simple_repeat Simple_repeat 1 36 0 273 182 0 18 chr9 71430880 71430921 -70840523 + MLT2D LTR ERVL 479 520 0 211 250 109 47 chr9 71430964 71431028 -70840416 - L2 LINE L2 -4 3268 3201 234 150 0 0 chr9 71431052 71431092 -70840352 + (A)n Simple_repeat Simple_repeat 1 40 0 218 313 114 23 chr9 71431139 71431270 -70840174 - MIR SINE MIR -107 155 13 1424 221 15 29 chr9 71431527 71431867 -70839577 - MLT1A2 LTR MaLR -2 372 38 249 33 0 0 chr9 71432086 71432116 -70839328 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 1605 184 0 11 chr9 71432811 71433089 -70838355 + AluSx SINE Alu 9 283 -29 358 0 81 0 chr9 71433089 71433151 -70838293 + (TA)n Simple_repeat Simple_repeat 2 68 0 229 196 0 0 chr9 71433151 71433197 -70838247 - L1MC4 LINE L1 -1339 6703 6658 1608 176 47 18 chr9 71433659 71433937 -70837507 + AluJo SINE Alu 1 286 -26 24 32 0 0 chr9 71433937 71433968 -70837476 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr9 71434297 71434322 -70837122 + AT_rich Low_complexity Low_complexity 1 25 0 1048 218 82 39 chr9 71434371 71434701 -70836743 + MER2 DNA MER2_type 1 344 0 1221 237 45 10 chr9 71435472 71435780 -70835664 + MER58B DNA MER1_type 6 324 -17 24 0 0 0 chr9 71437452 71437476 -70833968 + AT_rich Low_complexity Low_complexity 1 24 0 887 139 0 0 chr9 71437476 71437598 -70833846 - AluJb SINE Alu -190 122 1 201 38 19 94 chr9 71437778 71437831 -70833613 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 790 272 96 81 chr9 71437831 71438372 -70833072 + LTR67 LTR ERVL 9 557 0 23 33 0 0 chr9 71438667 71438697 -70832747 + AT_rich Low_complexity Low_complexity 1 30 0 2310 217 97 76 chr9 71439029 71439804 -70831640 - MER21B LTR ERV1 -60 803 13 269 278 56 0 chr9 71440783 71440855 -70830589 + MIR SINE MIR 184 259 -3 219 36 0 0 chr9 71441919 71441947 -70829497 + (A)n Simple_repeat Simple_repeat 1 28 0 2453 74 3 6 chr9 71442131 71442443 -70829001 - AluY SINE Alu 0 311 1 1189 164 107 93 chr9 71444447 71444832 -70826612 + MLT1B LTR MaLR 1 390 0 355 326 47 16 chr9 71445210 71445400 -70826044 - MER117 DNA MER1_type -1 196 1 2403 77 3 3 chr9 71445644 71445943 -70825501 - AluSg SINE Alu -11 299 1 22 80 0 0 chr9 71446039 71446089 -70825355 + AT_rich Low_complexity Low_complexity 1 50 0 527 124 67 0 chr9 71446854 71446959 -70824485 - L1MA9 LINE L1 -39 6273 6162 363 60 0 0 chr9 71446973 71447023 -70824421 + (TG)n Simple_repeat Simple_repeat 1 50 0 1792 83 0 0 chr9 71447063 71447292 -70824152 - AluSq SINE Alu -84 229 1 420 196 128 5 chr9 71447292 71447489 -70823955 - MLT1E3 LTR MaLR -408 216 1 261 330 41 10 chr9 71447631 71447728 -70823716 - L2 LINE L2 -6 3266 3167 283 251 50 95 chr9 71447864 71448043 -70823401 + MLT1J1 LTR MaLR 5 174 -272 336 266 32 0 chr9 71448076 71448170 -70823274 + MLT1J1 LTR MaLR 236 332 -114 183 282 34 86 chr9 71448402 71448519 -70822925 - MIR SINE MIR -77 185 75 511 279 74 41 chr9 71448957 71449201 -70822243 - L2 LINE L2 0 3313 3062 30 0 0 0 chr9 71450501 71450531 -70820913 + AT_rich Low_complexity Low_complexity 1 30 0 226 203 159 14 chr9 71450755 71450824 -70820620 - MIR SINE MIR -10 252 174 2093 128 0 10 chr9 71451036 71451334 -70820110 - AluSx SINE Alu -17 295 1 192 97 0 0 chr9 71452002 71452033 -70819411 + (CCA)n Simple_repeat Simple_repeat 2 32 0 1853 159 3 31 chr9 71452074 71452395 -70819049 - AluJo SINE Alu 0 312 1 884 50 71 79 chr9 71452412 71452504 -70818940 + MER85 DNA T2_type 1 93 -46 1900 123 0 15 chr9 71452504 71452772 -70818672 + AluSg SINE Alu 40 303 -7 884 50 71 79 chr9 71452772 71452819 -70818625 + MER85 DNA T2_type 93 139 0 380 393 43 6 chr9 71452873 71453036 -70818408 + L2 LINE L2 3104 3272 0 196 328 17 0 chr9 71454483 71454541 -70816903 + L2 LINE L2 3255 3313 0 189 356 0 0 chr9 71454559 71454618 -70816826 + L2 LINE L2 2228 2286 -1028 4733 156 43 17 chr9 71454643 71455523 -70815921 + MER4D LTR ERV1 1 903 0 230 140 0 20 chr9 71455657 71455707 -70815737 + (TC)n Simple_repeat Simple_repeat 1 49 0 38129 68 8 5 chr9 71455916 71457342 -70814102 + L1PA5 LINE L1 3 1424 -4730 2346 72 41 0 chr9 71457342 71457635 -70813809 + AluY SINE Alu 1 305 -6 38129 68 8 5 chr9 71457635 71462332 -70809112 + L1PA5 LINE L1 1424 6141 -13 2269 152 152 49 chr9 71462910 71463521 -70807923 + LTR8A LTR ERV1 1 674 -53 630 335 37 0 chr9 71463784 71463999 -70807445 + MIR SINE MIR 34 256 -6 444 273 133 16 chr9 71464250 71464506 -70806938 + L1MC/D LINE L1 5312 5597 -2211 363 44 0 0 chr9 71465425 71465470 -70805974 + (CA)n Simple_repeat Simple_repeat 2 46 0 2063 95 8 4 chr9 71466160 71466450 -70804994 + AluSq SINE Alu 19 309 0 2952 108 16 0 chr9 71466838 71467263 -70804181 - MER57B LTR ERV1 -2 432 1 1951 168 0 7 chr9 71468719 71469017 -70802427 + AluSx SINE Alu 2 297 -15 231 243 0 97 chr9 71469160 71469263 -70802181 - L2 LINE L2 -79 3234 3142 2138 138 0 0 chr9 71469334 71469631 -70801813 + AluSx SINE Alu 1 297 -15 235 176 0 68 chr9 71470190 71470264 -70801180 + L1MC1 LINE L1 1875 1943 -4453 320 160 0 0 chr9 71470335 71470385 -70801059 + MER63 DNA MER1_type 704 753 -309 315 274 36 12 chr9 71470381 71470465 -70800979 + MER63 DNA MER1_type 976 1061 0 * 311 277 67 45 chr9 71470540 71470661 -70800783 + L1MC1 LINE L1 2023 2140 -4256 1772 184 24 0 chr9 71470661 71470954 -70800490 + AluJo SINE Alu 1 300 -12 311 277 67 45 chr9 71470954 71471099 -70800345 + L1MC1 LINE L1 2140 2295 -4101 4784 190 54 10 chr9 71471109 71473238 -70798206 + L1MC1 LINE L1 3944 6176 -226 912 143 60 65 chr9 71473239 71473407 -70798037 + AluJo SINE Alu 85 251 -61 1002 216 19 0 chr9 71473408 71473621 -70797823 + L1MC1 LINE L1 6180 6396 -6 338 265 56 101 chr9 71473671 71473939 -70797505 - MLT1J LTR MaLR -132 379 124 574 249 57 21 chr9 71474213 71474406 -70797038 - MIR SINE MIR -27 235 36 233 399 20 7 chr9 71475830 71475978 -70795466 + LTR67 LTR ERVL 408 557 0 1668 193 25 43 chr9 71476055 71476423 -70795021 - MLT1A2 LTR MaLR -13 361 1 801 169 0 0 chr9 71477035 71477153 -70794291 - FLAM_C SINE Alu -25 118 1 6209 118 22 0 chr9 71477225 71478721 -70792723 + L1PA15 LINE L1 4637 6165 0 223 71 48 0 chr9 71478768 71478810 -70792634 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2184 89 0 46 chr9 71478812 71479137 -70792307 - AluY SINE Alu 0 311 2 271 286 78 53 chr9 71479139 71479384 -70792060 + ERVL LTR ERVL 890 1140 -4624 410 334 76 25 chr9 71479601 71480184 -70791260 + ERVL LTR ERVL 1390 2036 -2960 1481 196 25 0 chr9 71480338 71480464 -70790980 + AluJo SINE Alu 1 122 -190 306 0 0 0 chr9 71480464 71480498 -70790946 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1481 196 25 0 chr9 71480498 71480652 -70790792 + AluJo SINE Alu 122 288 -24 653 362 57 13 chr9 71480731 71481203 -70790241 + ERVL LTR ERVL 2347 2839 -2646 1213 310 57 36 chr9 71481295 71482005 -70789439 + ERVL LTR ERVL 2958 3737 -1906 325 211 198 70 chr9 71482079 71482306 -70789138 + ERVL LTR ERVL 3805 4060 -1425 631 268 128 8 chr9 71482478 71482713 -70788731 + ERVL LTR ERVL 4395 4657 -1107 859 303 50 35 chr9 71483611 71483660 -70787784 + ERVL LTR ERVL 4741 4788 -976 1854 177 61 29 chr9 71483660 71484038 -70787406 - MLT1B LTR MaLR 0 390 1 859 303 50 35 chr9 71484038 71484391 -70787053 + ERVL LTR ERVL 4788 5149 -615 1983 114 0 7 chr9 71484719 71484999 -70786445 + AluSg SINE Alu 1 278 -32 902 88 15 0 chr9 71484999 71485136 -70786308 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 757 263 30 73 chr9 71485136 71485368 -70786076 - MER58A DNA MER1_type -1 223 2 2707 36 0 0 chr9 71485662 71485969 -70785475 - AluY SINE Alu -4 307 1 656 294 138 24 chr9 71486993 71487371 -70784073 + L2 LINE L2 2893 3313 0 728 278 31 0 chr9 71487378 71487569 -70783875 - MIR SINE MIR -19 243 47 1267 106 9 97 chr9 71487682 71487908 -70783536 + AluJb SINE Alu 1 206 -106 224 119 0 24 chr9 71487934 71487976 -70783468 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 275 262 98 41 chr9 71488634 71488756 -70782688 - L1MC4a LINE L1 -1888 5920 5792 294 279 23 0 chr9 71489214 71489300 -70782144 - MIR SINE MIR -48 214 127 225 344 122 8 chr9 71489696 71489827 -70781617 + L2 LINE L2 3168 3313 0 251 349 28 9 chr9 71491082 71491188 -70780256 + L2 LINE L2 2914 3021 -251 399 295 108 0 chr9 71491291 71491420 -70780024 + MER5A DNA MER1_type 10 152 -37 331 213 183 65 chr9 71491994 71492163 -70779281 + MER5A DNA MER1_type 1 189 0 1854 118 0 0 chr9 71493728 71493982 -70777462 + AluSx SINE Alu 1 254 -58 562 98 25 98 chr9 71494394 71494481 -70776963 - L1MC1 LINE L1 -408 5925 5848 2552 47 0 3 chr9 71494481 71494779 -70776665 - AluY SINE Alu -1 310 14 562 98 25 98 chr9 71494779 71494813 -70776631 - L1MC1 LINE L1 -485 5848 5813 2195 137 35 0 chr9 71495693 71496036 -70775408 + L1MC1 LINE L1 5813 6167 -166 610 163 178 23 chr9 71496482 71496611 -70774833 + L1MC1 LINE L1 6185 6333 0 261 0 0 0 chr9 71497632 71497661 -70773783 + (A)n Simple_repeat Simple_repeat 1 29 0 315 0 0 0 chr9 71498295 71498330 -70773114 + (T)n Simple_repeat Simple_repeat 1 35 0 543 246 123 0 chr9 71499538 71499701 -70771743 + MER5A DNA MER1_type 4 189 0 344 271 64 43 chr9 71499701 71499841 -70771603 - MIR3 SINE MIR -48 160 18 701 318 77 52 chr9 71499878 71500307 -70771137 + L2 LINE L2 919 1336 -1978 414 0 0 0 chr9 71500307 71500353 -70771091 + (TC)n Simple_repeat Simple_repeat 1 46 0 1744 173 0 28 chr9 71500353 71500642 -70770802 - AluJb SINE Alu -31 281 1 701 318 77 52 chr9 71500642 71500976 -70770468 + L2 LINE L2 1335 1702 -1612 25 51 0 0 chr9 71501148 71501187 -70770257 + AT_rich Low_complexity Low_complexity 1 39 0 1718 176 0 13 chr9 71501464 71501573 -70769871 + AluJb SINE Alu 9 118 -194 225 0 0 0 chr9 71501573 71501598 -70769846 + (CA)n Simple_repeat Simple_repeat 2 26 0 1718 176 0 13 chr9 71501598 71501790 -70769654 + AluJb SINE Alu 118 306 -6 1546 129 3 104 chr9 71501829 71502116 -70769328 + MER4A LTR ERV1 381 638 -26 386 297 7 7 chr9 71502178 71502323 -70769121 - HAL1b LINE L1 -545 803 659 1574 289 68 58 chr9 71502349 71503421 -70768023 - L2 LINE L2 -54 3259 2176 953 97 8 8 chr9 71503486 71503620 -70767824 + AluJo SINE Alu 1 134 -178 198 261 87 14 chr9 71503624 71503693 -70767751 + MER5B DNA MER1_type 52 125 -53 * 675 230 171 0 chr9 71503672 71503894 -70767550 - L2 LINE L2 -1121 2193 1934 325 314 188 23 chr9 71503898 71504201 -70767243 - L2 LINE L2 -1854 1460 1108 204 285 24 91 chr9 71504453 71504570 -70766874 - L2 LINE L2 -2288 1026 922 1735 193 7 0 chr9 71504570 71504870 -70766574 + AluJo SINE Alu 1 302 -10 204 285 24 91 chr9 71504870 71504917 -70766527 - L2 LINE L2 -2392 922 873 324 198 25 32 chr9 71505312 71505469 -70765975 + CT-rich Low_complexity Low_complexity 3 158 0 529 204 30 6 chr9 71505485 71505652 -70765792 + CT-rich Low_complexity Low_complexity 3 173 0 2037 136 17 0 chr9 71505964 71506266 -70765178 - AluSx SINE Alu -5 307 1 393 233 58 0 chr9 71507121 71507207 -70764237 + MER63 DNA MER1_type 36 752 -310 24 0 0 0 chr9 71507232 71507256 -70764188 + AT_rich Low_complexity Low_complexity 1 24 0 195 343 0 0 chr9 71507383 71507453 -70763991 + MIR SINE MIR 85 154 -108 478 254 29 22 chr9 71508101 71508239 -70763205 + MIR SINE MIR 119 257 -5 1822 153 7 0 chr9 71508256 71508543 -70762901 - AluJb SINE Alu -23 289 1 650 329 134 34 chr9 71508959 71509277 -70762167 - L2 LINE L2 0 3313 3028 2444 87 0 3 chr9 71509277 71509586 -70761858 + AluY SINE Alu 1 308 -3 650 329 134 34 chr9 71509586 71510183 -70761261 - L2 LINE L2 -285 3028 2492 1979 153 0 3 chr9 71510183 71510483 -70760961 + AluJb SINE Alu 1 299 -13 650 329 134 34 chr9 71510483 71510648 -70760796 - L2 LINE L2 -821 2492 2345 1343 196 51 122 chr9 71510648 71511041 -70760403 + MLT1A1 LTR MaLR 1 365 0 650 329 134 34 chr9 71511041 71511119 -70760325 - L2 LINE L2 -968 2345 2032 1801 147 29 51 chr9 71511147 71511461 -70759983 + AluJb SINE Alu 1 307 -5 180 309 0 36 chr9 71511463 71511518 -70759926 + L2 LINE L2 3007 3059 -213 235 332 68 47 chr9 71512604 71512926 -70758518 - L2 LINE L2 -1528 1786 1458 2074 175 11 13 chr9 71512940 71513312 -70758132 + MLT2D LTR ERVL 1 371 -43 1799 173 7 3 chr9 71513351 71513635 -70757809 + AluJb SINE Alu 1 285 -27 225 88 29 0 chr9 71513676 71513710 -70757734 + MLT2D LTR ERVL 416 450 -14 186 43 0 0 chr9 71514722 71514745 -70756699 + (CA)n Simple_repeat Simple_repeat 2 24 0 2520 15 0 0 chr9 71514907 71515181 -70756263 + AluYb8 SINE Alu 39 312 -6 657 276 58 59 chr9 71515524 71516131 -70755313 - L1ME LINE L1 -359 5803 5204 1991 102 16 39 chr9 71516253 71516792 -70754652 + MER4A LTR ERV1 1 664 0 1009 171 74 0 chr9 71516913 71517088 -70754356 + MER5A DNA MER1_type 2 189 0 252 282 42 30 chr9 71517361 71517534 -70753910 - L1MEc LINE L1 -840 1903 1517 2055 142 0 19 chr9 71517572 71517718 -70753726 - AluSx SINE Alu 0 312 165 2474 128 22 8 chr9 71517718 71518077 -70753367 + THE1B LTR MaLR 1 364 0 2055 142 0 19 chr9 71518077 71518248 -70753196 - AluSx SINE Alu -147 165 1 341 268 95 36 chr9 71518258 71518426 -70753018 - L1MEc LINE L1 -4936 1627 1450 745 217 0 8 chr9 71518433 71518444 -70753000 - FLAM_C SINE Alu -174 128 118 417 20 0 0 chr9 71518444 71518494 -70752950 + (TATG)n Simple_repeat Simple_repeat 3 52 0 745 217 0 8 chr9 71518494 71518611 -70752833 - FLAM_C SINE Alu -184 118 1 757 185 0 37 chr9 71518804 71518939 -70752505 - FLAM_C SINE Alu -3 130 1 2056 122 16 13 chr9 71519020 71519331 -70752113 - AluSx SINE Alu 0 312 1 2667 133 41 7 chr9 71519934 71520348 -70751096 - MSTA LTR MaLR 0 428 1 6334 175 60 16 chr9 71520407 71521266 -70750178 + L1MCa LINE L1 8 938 -5488 1822 180 3 0 chr9 71521266 71521571 -70749873 - AluJo SINE Alu -6 306 1 6334 175 60 16 chr9 71521571 71521925 -70749519 + L1MCa LINE L1 938 1275 -5151 278 321 0 0 chr9 71522232 71522316 -70749128 - MER117 DNA MER1_type -107 90 7 914 165 153 0 chr9 71522668 71522838 -70748606 - MER58A DNA MER1_type -28 196 1 504 214 20 0 chr9 71522946 71523044 -70748400 - Tigger7 DNA MER2_type 0 2487 2388 * 1322 184 49 49 chr9 71523041 71523308 -70748136 - Tigger7 DNA MER2_type -466 267 1 217 140 0 100 chr9 71523426 71523476 -70747968 - MIR SINE MIR -106 156 112 201 261 31 15 chr9 71525204 71525269 -70746175 + MIR3 SINE MIR 132 197 -11 746 198 20 64 chr9 71525669 71525871 -70745573 + HsTC2 DNA Tc2 4 196 -1702 1331 162 81 2 chr9 71525878 71526182 -70745262 + MSTC LTR MaLR 1 424 -4 1223 189 29 123 chr9 71526209 71526591 -70744853 + HsTC2 DNA Tc2 256 601 -1297 337 221 0 0 chr9 71526610 71526678 -70744766 + HsTC2 DNA Tc2 1820 1887 -11 183 235 0 0 chr9 71527007 71527041 -70744403 + L2 LINE L2 3268 3301 -12 365 388 25 5 chr9 71527326 71527522 -70743922 + L2 LINE L2 1932 2131 -1183 205 306 106 74 chr9 71527549 71527833 -70743611 + L2 LINE L2 2232 2524 -790 303 177 0 0 chr9 71528009 71528071 -70743373 + (CA)n Simple_repeat Simple_repeat 1 62 0 1310 231 14 94 chr9 71528467 71528507 -70742937 - MLT1C LTR MaLR 0 467 425 818 168 0 0 chr9 71528507 71528638 -70742806 + FLAM_C SINE Alu 1 131 -2 1310 231 14 94 chr9 71528638 71529087 -70742357 - MLT1C LTR MaLR -42 425 17 280 346 37 0 chr9 71529151 71529232 -70742212 - L2 LINE L2 -38 3234 3151 758 258 74 72 chr9 71529333 71529391 -70742053 - MLT1I LTR MaLR -3 406 350 1650 142 116 4 chr9 71529391 71529659 -70741785 - AluJo SINE Alu -10 302 5 758 258 74 72 chr9 71529659 71530003 -70741441 - MLT1I LTR MaLR -59 350 3 255 333 169 14 chr9 71530100 71530319 -70741125 + L2 LINE L2 2832 3084 -188 233 298 94 59 chr9 71530380 71530634 -70740810 - L2 LINE L2 -35 3237 2896 1774 162 7 26 chr9 71530844 71531153 -70740291 - AluJb SINE Alu -9 303 1 22 70 0 0 chr9 71531245 71531288 -70740156 + AT_rich Low_complexity Low_complexity 1 43 0 939 169 88 0 chr9 71531452 71531612 -70739832 + AluSq SINE Alu 1 174 -139 411 183 0 0 chr9 71531617 71531699 -70739745 + (TA)n Simple_repeat Simple_repeat 1 82 0 226 187 33 44 chr9 71532696 71532787 -70738657 + (TTAAA)n Simple_repeat Simple_repeat 4 93 0 2794 181 39 30 chr9 71532908 71533422 -70738022 + L1MC3 LINE L1 7145 7668 -117 2273 112 0 3 chr9 71533422 71533727 -70737717 + AluSg SINE Alu 1 304 -6 2794 181 39 30 chr9 71533727 71533847 -70737597 + L1MC3 LINE L1 7668 7785 0 185 367 0 0 chr9 71533851 71533911 -70737533 + MIR3 SINE MIR 139 198 -10 333 297 84 20 chr9 71534148 71534444 -70737000 - L1ME LINE L1 -384 5782 5468 405 323 13 0 chr9 71534511 71534666 -70736778 - L1ME LINE L1 -816 5330 5174 990 193 7 3 chr9 71534688 71534959 -70736485 + MLT1A1 LTR MaLR 3 365 0 5403 181 110 75 chr9 71534959 71536607 -70734837 + MLT1A1-int LTR MaLR 2 1707 -28 308 318 0 0 chr9 71536605 71536737 -70734707 - L1ME LINE L1 -1155 4991 4860 * 300 312 120 8 chr9 71536777 71536902 -70734542 - MER5A DNA MER1_type -47 142 4 186 43 0 0 chr9 71537297 71537320 -70734124 + (CA)n Simple_repeat Simple_repeat 2 24 0 288 121 22 55 chr9 71537797 71537888 -70733556 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 2220 102 14 0 chr9 71539030 71539324 -70732120 + AluSx SINE Alu 1 298 -14 186 298 64 53 chr9 71539801 71539895 -70731549 + MER5A DNA MER1_type 93 187 -2 * 277 253 132 23 chr9 71539895 71540035 -70731409 - MIR SINE MIR -56 206 48 425 309 7 27 chr9 71540976 71541125 -70730319 - MER5A DNA MER1_type -9 180 35 1027 193 57 15 chr9 71541220 71541485 -70729959 - MER58B DNA MER1_type 0 341 66 883 171 0 59 chr9 71543108 71543295 -70728149 + MER5B DNA MER1_type 3 178 0 2180 132 0 0 chr9 71543454 71543765 -70727679 + AluSx SINE Alu 1 311 -1 288 0 0 0 chr9 71543948 71543980 -70727464 + (CA)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr9 71544806 71544830 -70726614 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 255 61 0 0 chr9 71545824 71545857 -70725587 + (A)n Simple_repeat Simple_repeat 1 33 0 3318 123 47 6 chr9 71546525 71547031 -70724413 + MER1A DNA MER1_type 1 527 0 668 212 85 6 chr9 71547097 71547262 -70724182 - L1PB4 LINE L1 -7 6149 5972 599 92 0 11 chr9 71547701 71547788 -70723656 + Charlie3 DNA MER1_type 2592 2677 -33 297 0 0 0 chr9 71547891 71547924 -70723520 + (TG)n Simple_repeat Simple_repeat 2 34 0 818 174 23 4 chr9 71547975 71548276 -70723168 + AluJ SINE Alu 1 264 -48 1790 197 0 3 chr9 71548278 71548582 -70722862 - AluJo SINE Alu -6 306 4 2135 113 13 3 chr9 71548814 71549116 -70722328 - AluSx SINE Alu -7 305 1 304 238 50 0 chr9 71549344 71549424 -70722020 - L1ME3A LINE L1 -68 6102 6019 21 0 0 0 chr9 71550210 71550231 -70721213 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 71551506 71551528 -70719916 + AT_rich Low_complexity Low_complexity 1 22 0 1857 130 53 20 chr9 71551574 71551874 -70719570 + AluSx SINE Alu 1 310 -2 678 226 8 0 chr9 71552118 71552242 -70719202 + FLAM_A SINE Alu 1 125 -8 2263 114 0 10 chr9 71552252 71552560 -70718884 + AluSx SINE Alu 1 305 -7 189 0 0 0 chr9 71552726 71552747 -70718697 + (T)n Simple_repeat Simple_repeat 1 21 0 383 104 0 15 chr9 71552756 71552823 -70718621 + (TC)n Simple_repeat Simple_repeat 2 67 0 1497 171 51 22 chr9 71553057 71553351 -70718093 + AluJb SINE Alu 3 304 0 688 156 35 14 chr9 71553419 71553560 -70717884 + L1MB3 LINE L1 6039 6182 -1 1894 158 24 61 chr9 71554221 71554528 -70716916 + MLT1A1 LTR MaLR 1 318 -47 351 0 0 0 chr9 71554528 71554567 -70716877 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2105 89 11 14 chr9 71554569 71554851 -70716593 - AluY SINE Alu -30 281 1 1894 158 24 61 chr9 71554851 71554919 -70716525 + MLT1A1 LTR MaLR 319 365 0 230 264 31 31 chr9 71555536 71555665 -70715779 + L2 LINE L2 2853 2981 -291 2042 160 3 0 chr9 71555821 71556128 -70715316 + AluSx SINE Alu 1 308 -4 905 125 0 22 chr9 71556262 71556398 -70715046 + FLAM_C SINE Alu 1 133 0 25 51 0 0 chr9 71556587 71556626 -70714818 + AT_rich Low_complexity Low_complexity 1 39 0 1910 162 7 0 chr9 71556918 71557226 -70714218 + AluSx SINE Alu 1 310 -2 941 204 11 0 chr9 71557472 71557658 -70713786 - MER5A DNA MER1_type 0 189 2 885 141 122 0 chr9 71559741 71559897 -70711547 + FAM SINE Alu 1 175 0 314 339 57 26 chr9 71560044 71560274 -70711170 + L2 LINE L2 2830 3066 -206 181 356 119 0 chr9 71560349 71560450 -70710994 + L2 LINE L2 3129 3241 -31 2339 97 0 22 chr9 71561515 71561834 -70709610 - AluSx SINE Alu 0 312 1 297 286 0 0 chr9 71562045 71562129 -70709315 - L1ME LINE L1 -467 5654 5571 22 56 0 0 chr9 71562149 71562185 -70709259 + AT_rich Low_complexity Low_complexity 1 36 0 589 188 36 0 chr9 71562222 71562360 -70709084 - L1MB4 LINE L1 -1 6179 6037 1887 184 0 0 chr9 71562404 71562709 -70708735 + AluJb SINE Alu 1 305 -7 294 170 52 131 chr9 71562749 71562902 -70708542 + L1ME LINE L1 5651 5791 -330 366 337 86 15 chr9 71563493 71563760 -70707684 - L2 LINE L2 -609 2705 2420 270 328 8 8 chr9 71564557 71564679 -70706765 - MER117 DNA MER1_type 0 197 76 27 49 0 0 chr9 71566121 71566162 -70705282 + AT_rich Low_complexity Low_complexity 1 41 0 306 254 40 63 chr9 71566165 71566291 -70705153 + L1MC4 LINE L1 6600 6722 -1320 2374 101 3 3 chr9 71566374 71566681 -70704763 + AluSq SINE Alu 1 307 -6 2172 113 6 3 chr9 71567244 71567555 -70703889 - AluSq SINE Alu -1 312 1 2486 56 3 3 chr9 71568332 71568636 -70702808 + AluY SINE Alu 1 304 -7 895 223 77 18 chr9 71568819 71569039 -70702405 - MIR SINE MIR -28 234 2 348 333 48 20 chr9 71569341 71569488 -70701956 + MIR3 SINE MIR 3 153 -55 381 162 18 0 chr9 71570263 71570346 -70701098 + L1ME2 LINE L1 6082 6170 0 1342 191 12 97 chr9 71571707 71572048 -70699396 + AluJb SINE Alu 1 312 0 368 261 197 23 chr9 71572780 71572998 -70698446 - L2 LINE L2 -36 3277 3022 2153 102 26 71 chr9 71573542 71573923 -70697521 + THE1B LTR MaLR 1 364 0 473 245 291 0 chr9 71574143 71574339 -70697105 + MIR SINE MIR 8 260 -2 210 171 0 0 chr9 71575191 71575232 -70696212 + (TAG)n Simple_repeat Simple_repeat 1 41 0 1813 189 0 7 chr9 71575665 71575972 -70695472 - AluJo SINE Alu -7 305 1 234 164 0 0 chr9 71576021 71576076 -70695368 + (TA)n Simple_repeat Simple_repeat 2 56 0 1352 174 98 33 chr9 71576077 71576353 -70695091 - AluJo SINE Alu -18 294 1 25 31 0 0 chr9 71576829 71576861 -70694583 + AT_rich Low_complexity Low_complexity 1 32 0 774 249 19 78 chr9 71577119 71577317 -70694127 + MIR SINE MIR 10 189 -73 1880 167 0 0 chr9 71577317 71577605 -70693839 + AluJo SINE Alu 1 288 -24 774 249 19 78 chr9 71577605 71577675 -70693769 + MIR SINE MIR 189 262 0 28 29 0 0 chr9 71578849 71578884 -70692560 + AT_rich Low_complexity Low_complexity 1 35 0 2188 122 0 13 chr9 71579000 71579304 -70692140 - AluSx SINE Alu -12 300 1 21 36 0 0 chr9 71579310 71579338 -70692106 + AT_rich Low_complexity Low_complexity 1 28 0 201 260 0 40 chr9 71579641 71579691 -70691753 + L2 LINE L2 3207 3254 -18 * 661 280 119 25 chr9 71579675 71580071 -70691373 - L2 LINE L2 -314 2999 2556 2087 136 3 3 chr9 71580716 71581018 -70690426 - AluSq SINE Alu -11 302 1 250 195 26 0 chr9 71581458 71581535 -70689909 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 228 300 61 166 chr9 71583141 71583665 -70687779 - L2 LINE L2 0 3272 2804 503 349 116 32 chr9 71583735 71584176 -70687268 - L2 LINE L2 -615 2699 2222 260 267 0 0 chr9 71584195 71584255 -70687189 + (TG)n Simple_repeat Simple_repeat 2 61 0 2180 118 3 0 chr9 71584442 71584739 -70686705 + AluSg1 SINE Alu 1 298 -11 1439 206 154 3 chr9 71585596 71585940 -70685504 + MSTD LTR MaLR 1 396 0 244 176 0 39 chr9 71586911 71586962 -70684482 - L2 LINE L2 0 3313 3265 2350 76 0 0 chr9 71588209 71588500 -70682944 + AluSx SINE Alu 5 295 -17 1354 201 84 4 chr9 71588512 71588620 -70682824 + AluJo SINE Alu 3 101 -211 351 0 0 0 chr9 71588620 71588659 -70682785 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 741 79 0 0 chr9 71588658 71588759 -70682685 + (TA)n Simple_repeat Simple_repeat 2 102 0 1354 201 84 4 chr9 71588659 71588923 -70682521 + AluJo SINE Alu 101 297 -15 243 0 0 0 chr9 71589242 71589269 -70682175 + (TG)n Simple_repeat Simple_repeat 2 28 0 1535 146 27 53 chr9 71589269 71589565 -70681879 - AluJb SINE Alu -23 289 2 2366 78 3 7 chr9 71589764 71590071 -70681373 + AluY SINE Alu 1 306 -5 205 222 0 28 chr9 71590871 71590943 -70680501 + A-rich Low_complexity Low_complexity 2 71 0 1648 191 27 10 chr9 71591881 71592174 -70679270 + AluJb SINE Alu 1 298 -14 223 191 106 0 chr9 71592276 71592323 -70679121 + MIR SINE MIR 193 244 -18 200 260 40 0 chr9 71592290 71592340 -70679104 + L2 LINE L2 3257 3308 -5 * 192 40 0 0 chr9 71592486 71592511 -70678933 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1095 65 0 0 chr9 71593121 71593260 -70678184 - Alu SINE Alu 0 310 172 291 352 128 9 chr9 71593263 71593482 -70677962 - L3 LINE CR1 -28 1549 1305 1982 131 0 13 chr9 71594275 71594573 -70676871 - AluSx SINE Alu -17 295 2 225 0 0 0 chr9 71594628 71594653 -70676791 + (TTTTTG)n Simple_repeat Simple_repeat 1 25 0 1153 110 0 0 chr9 71594781 71594944 -70676500 + L1PA10 LINE L1 5993 6155 -13 189 147 0 0 chr9 71595113 71595147 -70676297 + (ATGGTG)n Simple_repeat Simple_repeat 2 35 0 208 313 83 10 chr9 71595531 71595627 -70675817 - L2 LINE L2 -8 3305 3203 1692 173 18 3 chr9 71595931 71596214 -70675230 + AluJb SINE Alu 1 287 -25 1858 173 0 3 chr9 71596237 71596538 -70674906 + AluJo SINE Alu 1 300 -12 1620 163 76 7 chr9 71597324 71597612 -70673832 + AluJb SINE Alu 5 312 0 1746 81 182 0 chr9 71597617 71597864 -70673580 + AluSx SINE Alu 21 312 0 441 238 124 0 chr9 71597991 71598096 -70673348 - FLAM_C SINE Alu -14 119 2 204 163 0 0 chr9 71598272 71598315 -70673129 + (TAA)n Simple_repeat Simple_repeat 2 44 0 324 271 169 34 chr9 71598336 71598513 -70672931 - MIR SINE MIR -59 203 3 1961 131 0 7 chr9 71598674 71598956 -70672488 + AluSx SINE Alu 18 297 -15 2203 112 0 0 chr9 71598986 71599273 -70672171 + AluSg1 SINE Alu 3 289 -20 1152 86 33 0 chr9 71599667 71599818 -70671626 + AluSg/x SINE Alu 154 309 0 1518 86 95 0 chr9 71600093 71600303 -70671141 - MER30 DNA MER1_type 0 230 1 297 289 0 33 chr9 71601034 71601124 -70670320 + MER5B DNA MER1_type 6 92 -86 261 286 91 13 chr9 71601183 71601260 -70670184 + MER5B DNA MER1_type 96 178 0 726 190 95 45 chr9 71601267 71601446 -70669998 - MER5A DNA MER1_type 0 189 2 371 213 125 0 chr9 71601523 71601603 -70669841 - MER5B DNA MER1_type -83 95 6 2469 81 3 3 chr9 71601612 71601922 -70669522 - AluSp SINE Alu -2 311 2 2288 105 0 22 chr9 71602058 71602372 -70669072 - AluSq SINE Alu -6 307 1 1279 229 58 75 chr9 71603180 71603364 -70668080 + L1ME3A LINE L1 5630 5816 -354 764 130 7 43 chr9 71603364 71603502 -70667942 + FLAM_C SINE Alu 1 133 0 1279 229 58 75 chr9 71603502 71603853 -70667591 + L1ME3A LINE L1 5816 6156 -14 279 357 70 83 chr9 71603880 71604180 -70667264 + L2 LINE L2 2925 3220 -52 1533 217 3 3 chr9 71604519 71604818 -70666626 + AluJb SINE Alu 1 299 -13 309 211 78 11 chr9 71606359 71606449 -70664995 + MIR3 SINE MIR 106 201 -7 207 0 0 0 chr9 71607023 71607046 -70664398 + (A)n Simple_repeat Simple_repeat 1 23 0 323 257 246 0 chr9 71609612 71609787 -70661657 + MARNA DNA Mariner 20 237 -349 2295 108 7 0 chr9 71609850 71610156 -70661288 + AluSx SINE Alu 1 308 -4 2191 103 0 23 chr9 71610853 71611163 -70660281 - AluSp SINE Alu -2 311 9 1901 176 0 0 chr9 71611176 71611471 -70659973 - AluJo SINE Alu -17 295 1 1037 89 94 11 chr9 71611507 71611698 -70659746 - L1MB4 LINE L1 -1 6179 5973 453 273 93 25 chr9 71611797 71611958 -70659486 + MER5B DNA MER1_type 7 178 0 331 344 15 15 chr9 71611971 71612102 -70659342 - MER5A DNA MER1_type -5 184 54 877 213 20 40 chr9 71612427 71612641 -70658803 - MIR SINE MIR -51 211 3 207 0 0 0 chr9 71612883 71612906 -70658538 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 2471 133 41 7 chr9 71613266 71613680 -70657764 - MSTA LTR MaLR 0 428 1 5803 173 61 13 chr9 71613753 71614598 -70656846 + L1MCa LINE L1 19 939 -5487 1809 180 3 3 chr9 71614598 71614904 -70656540 - AluJo SINE Alu -6 306 1 5803 173 61 13 chr9 71614904 71615258 -70656186 + L1MCa LINE L1 939 1275 -5151 251 321 0 0 chr9 71615565 71615649 -70655795 - MER117 DNA MER1_type -107 90 7 835 165 153 0 chr9 71616001 71616171 -70655273 - MER58A DNA MER1_type -28 196 1 467 214 20 0 chr9 71616279 71616377 -70655067 - Tigger7 DNA MER2_type 0 2491 2392 * 1213 184 49 49 chr9 71616374 71616641 -70654803 - Tigger7 DNA MER2_type -2220 267 1 217 140 0 100 chr9 71616759 71616809 -70654635 - MIR SINE MIR -106 156 112 206 261 31 15 chr9 71618537 71618602 -70652842 + MIR3 SINE MIR 132 197 -11 657 198 20 64 chr9 71619002 71619204 -70652240 + HsTC2 DNA Tc2 4 196 -1702 1242 162 81 2 chr9 71619211 71619515 -70651929 + MSTC LTR MaLR 1 424 -4 1072 189 29 123 chr9 71619542 71619924 -70651520 + HsTC2 DNA Tc2 256 601 -1297 304 212 0 0 chr9 71619945 71620011 -70651433 + HsTC2 DNA Tc2 1825 1890 -8 182 235 0 0 chr9 71620340 71620374 -70651070 + L2 LINE L2 3268 3301 -12 365 388 25 5 chr9 71620660 71620856 -70650588 + L2 LINE L2 1932 2131 -1183 205 306 106 74 chr9 71620883 71621167 -70650277 + L2 LINE L2 2232 2524 -790 303 177 0 0 chr9 71621343 71621405 -70650039 + (CA)n Simple_repeat Simple_repeat 1 62 0 1310 231 14 94 chr9 71621801 71621841 -70649603 - MLT1C LTR MaLR 0 467 425 786 152 8 15 chr9 71621841 71621973 -70649471 + FLAM_C SINE Alu 1 131 -2 1310 231 14 94 chr9 71621973 71622422 -70649022 - MLT1C LTR MaLR -42 425 17 280 346 37 0 chr9 71622485 71622566 -70648878 - L2 LINE L2 -38 3234 3151 307 235 26 17 chr9 71622725 71622840 -70648604 - FRAM SINE Alu 0 166 51 1798 197 0 0 chr9 71623391 71623696 -70647748 - AluJb SINE Alu -7 305 1 589 188 36 0 chr9 71623740 71623878 -70647566 + L1MB4 LINE L1 6037 6179 -1 22 56 0 0 chr9 71623915 71623951 -70647493 + AT_rich Low_complexity Low_complexity 1 36 0 297 286 0 0 chr9 71623971 71624055 -70647389 + L1ME LINE L1 5571 5654 -467 2031 125 0 3 chr9 71624266 71624555 -70646889 + AluSx SINE Alu 1 288 -24 298 256 26 0 chr9 71625147 71625225 -70646219 + C-rich Low_complexity Low_complexity 2 81 0 256 263 0 30 chr9 71625265 71625364 -70646080 + MIR SINE MIR 47 142 -120 429 230 0 0 chr9 71625808 71625934 -70645510 + GA-rich Low_complexity Low_complexity 1 126 0 26 64 0 0 chr9 71627179 71627226 -70644218 + AT_rich Low_complexity Low_complexity 1 47 0 218 240 62 52 chr9 71627256 71627352 -70644092 - L2 LINE L2 -1 3271 3175 1964 57 4 0 chr9 71627396 71627642 -70643802 + L1PA6 LINE L1 5906 6152 -2 1388 179 40 36 chr9 71628647 71628765 -70642679 + AluJo SINE Alu 1 117 -195 315 0 0 0 chr9 71628765 71628800 -70642644 + (CA)n Simple_repeat Simple_repeat 2 36 0 1388 179 40 36 chr9 71628800 71628982 -70642462 + AluJo SINE Alu 117 302 -10 1905 165 6 16 chr9 71629093 71629408 -70642036 + AluJb SINE Alu 1 312 0 207 0 0 0 chr9 71629610 71629633 -70641811 + (TAGA)n Simple_repeat Simple_repeat 1 23 0 183 129 0 0 chr9 71629635 71629666 -70641778 + (TA)n Simple_repeat Simple_repeat 1 31 0 284 275 0 11 chr9 71629666 71629757 -70641687 - L1MC4 LINE L1 -1339 6703 6614 230 178 0 109 chr9 71629670 71629771 -70641673 + L1MC4 LINE L1 6614 6703 -1339 * 315 0 0 0 chr9 71629891 71629926 -70641518 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 327 25 0 0 chr9 71629925 71629965 -70641479 + (CA)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr9 71631157 71631184 -70640260 + (GTTTG)n Simple_repeat Simple_repeat 1 27 0 2866 139 85 20 chr9 71631697 71632249 -70639195 - LTR49 LTR ERV1 -4 591 4 2506 154 45 2 chr9 71632792 71633234 -70638210 - LTR29 LTR ERV1 0 622 162 322 310 0 43 chr9 71635075 71635191 -70636253 - L2 LINE L2 -25 3247 3137 770 183 34 46 chr9 71635771 71635946 -70635498 + FAM SINE Alu 1 48 -1 1992 128 0 14 chr9 71636152 71636441 -70635003 + AluJb SINE Alu 5 289 -23 222 256 0 49 chr9 71637277 71637359 -70634085 + L2 LINE L2 3227 3304 -9 385 308 145 0 chr9 71637845 71638004 -70633440 + MIR3 SINE MIR 19 200 -8 276 284 95 24 chr9 71638796 71638965 -70632479 - MIR SINE MIR -69 193 13 2340 98 0 19 chr9 71639476 71639793 -70631651 - AluSx SINE Alu -1 311 1 237 83 0 0 chr9 71641985 71642021 -70629423 + (TCC)n Simple_repeat Simple_repeat 3 38 0 189 0 0 0 chr9 71642484 71642505 -70628939 + (CGGG)n Simple_repeat Simple_repeat 3 23 0 25 51 0 0 chr9 71642559 71642598 -70628846 + GC_rich Low_complexity Low_complexity 1 39 0 204 326 22 0 chr9 71643563 71643652 -70627792 + MER5B DNA MER1_type 4 94 -84 1194 213 142 42 chr9 71643943 71644393 -70627051 + MLT1D LTR MaLR 1 495 -10 234 258 138 69 chr9 71644428 71644587 -70626857 - MIR SINE MIR -12 250 81 2186 87 3 21 chr9 71644643 71644954 -70626490 + AluY SINE Alu 1 306 0 491 131 90 66 chr9 71645055 71645177 -70626267 + L1MC1 LINE L1 6209 6333 0 2303 98 0 0 chr9 71645278 71645574 -70625870 + AluSx SINE Alu 1 296 -16 759 249 144 9 chr9 71645657 71646026 -70625418 - LTR16A LTR ERVL 0 450 2 2493 111 8 32 chr9 71646026 71646403 -70625041 + MSTA LTR MaLR 1 368 -60 357 292 162 16 chr9 71646552 71646737 -70624707 + MIR SINE MIR 1 212 -50 491 204 0 0 chr9 71646843 71646931 -70624513 - FLAM_A SINE Alu -27 115 28 258 191 0 0 chr9 71647198 71647240 -70624204 - Tigger2 DNA MER2_type -12 2706 2665 216 97 0 0 chr9 71647318 71647349 -70624095 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 279 0 0 chr9 71647550 71647593 -70623851 + L2 LINE L2 3187 3229 -43 940 112 8 0 chr9 71647864 71648019 -70623425 - AluJb SINE Alu 0 313 158 1255 150 0 15 chr9 71648022 71648086 -70623358 - AluJb SINE Alu -115 197 134 2356 95 3 3 chr9 71648086 71648391 -70623053 - AluSq SINE Alu -8 305 1 1255 150 0 15 chr9 71648391 71648526 -70622918 - AluJb SINE Alu -178 134 1 25 31 0 0 chr9 71648949 71648981 -70622463 + AT_rich Low_complexity Low_complexity 1 32 0 223 288 30 0 chr9 71649218 71649284 -70622160 - MIR SINE MIR -63 145 78 2330 105 3 0 chr9 71649333 71649637 -70621807 + AluSq SINE Alu 1 305 -8 912 157 20 0 chr9 71649655 71649808 -70621636 + AluJb SINE Alu 145 300 -12 1387 171 112 8 chr9 71650493 71650751 -70620693 + AluJo SINE Alu 1 285 -27 622 98 28 112 chr9 71650822 71650965 -70620479 + L1MA9 LINE L1 6182 6312 0 235 277 106 28 chr9 71651260 71651401 -70620043 - L2 LINE L2 -2 3311 3160 1861 86 4 0 chr9 71651412 71651645 -70619799 + AluSx SINE Alu 1 234 -78 289 236 135 11 chr9 71651796 71651885 -70619559 + MLT1H LTR MaLR 118 217 -332 206 363 44 0 chr9 71651891 71651982 -70619462 - L2 LINE L2 -217 3096 3002 1624 175 17 20 chr9 71652039 71652336 -70619108 + AluJb SINE Alu 1 296 -16 374 201 121 9 chr9 71652827 71652937 -70618507 + MLT1G1 LTR MaLR 420 587 -8 2412 106 0 3 chr9 71652952 71653264 -70618180 - AluSx SINE Alu -1 311 1 964 192 104 0 chr9 71653274 71653467 -70617977 + MER20 DNA MER1_type 7 219 0 509 286 48 79 chr9 71653480 71653833 -70617611 - L1MC/D LINE L1 -2212 5596 5255 2507 91 0 0 chr9 71653839 71654147 -70617297 + AluSx SINE Alu 5 312 0 616 258 25 6 chr9 71654658 71654821 -70616623 + MIR SINE MIR 32 197 -65 213 236 0 0 chr9 71654948 71655003 -70616441 - MIR SINE MIR -108 154 100 429 259 0 50 chr9 71655070 71655209 -70616235 + L3 LINE CR1 1209 1340 -237 294 223 11 75 chr9 71655251 71655345 -70616099 + L2 LINE L2 3185 3272 0 185 250 23 0 chr9 71655353 71655397 -70616047 + L3 LINE CR1 1383 1427 -150 1769 150 37 14 chr9 71655537 71655831 -70615613 + AluJb SINE Alu 1 301 -11 378 259 0 74 chr9 71655930 71656065 -70615379 + MIR SINE MIR 29 153 -109 413 253 296 0 chr9 71656303 71656489 -70614955 - MIR SINE MIR -9 253 13 1076 134 0 0 chr9 71657405 71657577 -70613867 + AluSg/x SINE Alu 136 307 0 253 341 45 8 chr9 71657712 71657844 -70613600 + L1MC4 LINE L1 7597 7733 -309 1966 150 175 3 chr9 71657892 71658258 -70613186 - MSTB1 LTR MaLR 0 432 4 25 31 0 0 chr9 71658318 71658350 -70613094 + AT_rich Low_complexity Low_complexity 1 32 0 3706 66 2 10 chr9 71658357 71658841 -70612603 + L1PA8 LINE L1 5692 6171 -1 307 266 87 33 chr9 71658842 71658905 -70612539 + L1MC4 LINE L1 7804 7862 -180 1810 170 0 27 chr9 71658905 71659205 -70612239 - AluJb SINE Alu -19 293 2 307 266 87 33 chr9 71659205 71659325 -70612119 + L1MC4 LINE L1 7862 7997 -45 1946 142 34 7 chr9 71659325 71659621 -70611823 - AluSx SINE Alu -6 306 3 1557 196 82 82 chr9 71659941 71660047 -70611397 - L1MC4 LINE L1 -3 8039 7934 2066 148 0 0 chr9 71660047 71660350 -70611094 - AluJb SINE Alu -9 303 1 1557 196 82 82 chr9 71660350 71660768 -70610676 - L1MC4 LINE L1 -107 7935 7515 1197 167 28 33 chr9 71661036 71661251 -70610193 + AluJb SINE Alu 84 297 -15 2213 104 3 14 chr9 71661321 71661618 -70609826 - AluSq SINE Alu -17 296 3 2129 130 7 3 chr9 71661623 71661924 -70609520 - AluSx SINE Alu -10 302 1 260 265 15 0 chr9 71662040 71662108 -70609336 - MIR3 SINE MIR -27 181 113 362 291 70 59 chr9 71662111 71662249 -70609195 + L1ME4a LINE L1 5647 5782 -339 2248 117 3 3 chr9 71662249 71662557 -70608887 + AluSg SINE Alu 1 308 -2 362 291 70 59 chr9 71662557 71662775 -70608669 + L1ME4a LINE L1 5782 6007 -114 1552 191 3 57 chr9 71662953 71663267 -70608177 + AluJb SINE Alu 1 297 -15 1110 189 42 67 chr9 71663311 71663596 -70607848 - AluJb SINE Alu 0 312 35 1220 189 9 4 chr9 71663651 71663879 -70607565 + AluSx SINE Alu 1 229 -83 742 175 16 67 chr9 71663988 71664182 -70607262 - AluJb SINE Alu -100 212 29 1673 122 0 4 chr9 71664232 71664462 -70606982 + AluSx SINE Alu 1 229 -83 270 0 0 0 chr9 71664482 71664512 -70606932 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 282 205 0 0 chr9 71664631 71664709 -70606735 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 2300 105 23 0 chr9 71664957 71665261 -70606183 - AluSx SINE Alu 0 312 2 1201 281 54 34 chr9 71665843 71666369 -70605075 - L2 LINE L2 0 3313 2779 2065 141 3 0 chr9 71666381 71666679 -70604765 + AluSx SINE Alu 1 299 -13 186 133 0 0 chr9 71666730 71666760 -70604684 + (A)n Simple_repeat Simple_repeat 1 30 0 464 268 8 8 chr9 71666778 71666901 -70604543 - L2 LINE L2 -557 2757 2635 2509 78 0 0 chr9 71667094 71667389 -70604055 - AluSq SINE Alu -13 300 6 315 233 144 22 chr9 71667460 71667630 -70603814 + MIR SINE MIR 11 144 -64 2004 303 77 44 chr9 71668231 71669510 -70601934 - ERVL LTR ERVL -1327 4437 3065 26 30 0 0 chr9 71670189 71670222 -70601222 + AT_rich Low_complexity Low_complexity 1 33 0 1469 163 45 107 chr9 71670269 71670556 -70600888 - MER68 LTR ERV1 0 562 297 2748 155 16 38 chr9 71670556 71670944 -70600500 + MER66B LTR ERV1 1 377 -109 1986 141 34 0 chr9 71670944 71671235 -70600209 + AluJb SINE Alu 1 301 -11 2748 155 16 38 chr9 71671235 71671343 -70600101 + MER66B LTR ERV1 377 486 0 1469 163 45 107 chr9 71671343 71671392 -70600052 - MER68 LTR ERV1 -265 297 247 1628 170 14 31 chr9 71672122 71672443 -70599001 - AluJb SINE Alu 0 316 1 566 118 84 17 chr9 71672452 71672571 -70598873 - L1MA7 LINE L1 -6 6285 6159 662 317 10 0 chr9 71672733 71672932 -70598512 + MIR SINE MIR 46 246 -16 706 194 8 8 chr9 71673034 71673168 -70598276 + FLAM_C SINE Alu 2 135 -8 1420 192 15 8 chr9 71673749 71674015 -70597429 + AluJb SINE Alu 1 268 -44 356 0 23 0 chr9 71674038 71674082 -70597362 + (CA)n Simple_repeat Simple_repeat 2 46 0 210 265 141 59 chr9 71674150 71674320 -70597124 + MIR SINE MIR 53 236 -26 1171 115 6 12 chr9 71674584 71674749 -70596695 - FRAM SINE Alu -13 163 1 2328 48 0 4 chr9 71675045 71675316 -70596128 - AluY SINE Alu -13 298 29 4516 110 33 80 chr9 71676282 71677097 -70594347 + L1PA12 LINE L1 5380 6156 -12 2281 106 3 0 chr9 71677140 71677441 -70594003 + AluSp SINE Alu 2 303 -10 1923 126 58 0 chr9 71678128 71678435 -70593009 + AluSg SINE Alu 2 324 0 2437 88 0 0 chr9 71679083 71679379 -70592065 + AluSp SINE Alu 1 296 -17 29 0 0 0 chr9 71679474 71679503 -70591941 + AT_rich Low_complexity Low_complexity 1 29 0 726 168 15 30 chr9 71679577 71679708 -70591736 + FLAM_A SINE Alu 1 124 -9 2029 90 3 24 chr9 71680018 71680306 -70591138 + AluSx SINE Alu 1 282 -30 22 0 0 0 chr9 71680408 71680430 -70591014 + AT_rich Low_complexity Low_complexity 1 22 0 1801 142 0 35 chr9 71680539 71680850 -70590594 - AluJb SINE Alu -2 310 11 23 0 0 0 chr9 71681715 71681738 -70589706 + AT_rich Low_complexity Low_complexity 1 23 0 678 110 0 0 chr9 71682310 71682401 -70589043 + FLAM_C SINE Alu 35 125 -18 892 161 0 19 chr9 71682758 71682913 -70588531 + FRAM SINE Alu 2 153 -13 506 302 93 6 chr9 71682939 71683121 -70588323 - MIR3 SINE MIR -8 200 3 1936 177 0 0 chr9 71683665 71683975 -70587469 - AluJb SINE Alu -1 311 2 1279 124 85 10 chr9 71684059 71684260 -70587184 + AluSg SINE Alu 1 216 -94 785 185 0 0 chr9 71684326 71684461 -70586983 - MER2 DNA MER2_type -209 136 2 2097 113 0 3 chr9 71684692 71685012 -70586432 + AluSx SINE Alu 1 319 0 735 285 71 37 chr9 71685081 71685263 -70586181 + L1ME4a LINE L1 5465 5639 -482 1648 188 3 20 chr9 71685263 71685561 -70585883 + AluJb SINE Alu 1 293 -19 735 285 71 37 chr9 71685561 71685785 -70585659 + L1ME4a LINE L1 5639 5885 -236 2322 95 7 0 chr9 71685836 71686140 -70585304 - AluY SINE Alu -5 306 1 1080 90 0 0 chr9 71686143 71686276 -70585168 - AluSq/x SINE Alu -180 133 1 391 258 39 8 chr9 71686311 71686439 -70585005 + L1ME4a LINE L1 5988 6119 -2 250 232 321 9 chr9 71687050 71687162 -70584282 + MIR3 SINE MIR 12 158 -50 777 275 16 5 chr9 71687494 71687683 -70583761 + MIR SINE MIR 1 191 -71 244 240 39 124 chr9 71687777 71687906 -70583538 - MIR3 SINE MIR -1 207 90 432 296 92 7 chr9 71688462 71688614 -70582830 - MIR SINE MIR -69 193 29 2071 106 35 0 chr9 71689477 71689761 -70581683 + AluSg SINE Alu 1 294 -16 360 0 0 0 chr9 71689761 71689801 -70581643 + (TA)n Simple_repeat Simple_repeat 2 41 0 2246 118 0 3 chr9 71689801 71690105 -70581339 + AluSx SINE Alu 3 305 -7 463 267 0 33 chr9 71690690 71690810 -70580634 - L2 LINE L2 -7 3306 3191 196 191 149 0 chr9 71691990 71692037 -70579407 - L2 LINE L2 -526 2788 2735 334 225 39 51 chr9 71692051 71692229 -70579215 - L1MC4 LINE L1 -2 8040 7865 247 297 0 0 chr9 71692229 71692293 -70579151 - L2 LINE L2 -563 2751 2688 549 252 0 0 chr9 71692546 71692677 -70578767 - MIR SINE MIR -3 259 129 25 0 0 0 chr9 71692699 71692724 -70578720 + AT_rich Low_complexity Low_complexity 1 25 0 1771 144 0 0 chr9 71692732 71692989 -70578455 + AluSx SINE Alu 1 257 -55 356 269 113 31 chr9 71693500 71693660 -70577784 + MER5B DNA MER1_type 2 174 -4 186 43 0 0 chr9 71693673 71693696 -70577748 + (T)n Simple_repeat Simple_repeat 1 23 0 1752 110 16 4 chr9 71693709 71693963 -70577481 + AluY SINE Alu 1 257 -54 436 363 11 9 chr9 71693978 71694175 -70577269 - MIR3 SINE MIR -7 201 6 246 225 208 42 chr9 71694859 71694979 -70576465 - MER5A DNA MER1_type -6 183 44 * 548 172 159 55 chr9 71694874 71694990 -70576454 + MER5A DNA MER1_type 30 166 -23 2051 104 3 21 chr9 71694990 71695334 -70576110 - AluSx SINE Alu 0 339 1 548 172 159 55 chr9 71695334 71695361 -70576083 + MER5A DNA MER1_type 166 189 0 188 400 0 0 chr9 71695700 71695770 -70575674 + MIR SINE MIR 82 151 -111 247 305 60 24 chr9 71695933 71696100 -70575344 - LTR23 LTR ERV1 0 437 265 329 318 89 28 chr9 71696105 71696284 -70575160 + L2 LINE L2 2562 2751 -563 559 153 20 0 chr9 71696284 71696382 -70575062 - AluJo SINE Alu -14 298 199 703 202 0 8 chr9 71696382 71696506 -70574938 - AluJo SINE Alu -177 125 3 1097 94 3 161 chr9 71696677 71696963 -70574481 + LTR49 LTR ERV1 2 242 -353 291 213 0 0 chr9 71696980 71697055 -70574389 + CT-rich Low_complexity Low_complexity 2 76 0 1408 195 15 15 chr9 71697062 71697329 -70574115 - AluJb SINE Alu -45 267 1 636 196 104 78 chr9 71697329 71697652 -70573792 + LTR48 LTR ERV1 240 787 0 2322 86 13 0 chr9 71697734 71698035 -70573409 - AluSp SINE Alu -8 305 1 189 0 0 0 chr9 71698126 71698147 -70573297 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2263 118 0 0 chr9 71698150 71698446 -70572998 - AluSg SINE Alu -14 296 1 352 167 12 48 chr9 71698811 71698895 -70572549 - L1MC4 LINE L1 -182 7860 7780 307 266 0 51 chr9 71698911 71698990 -70572454 + MER58 DNA MER1_type 2 76 -2344 2468 76 3 0 chr9 71699012 71699313 -70572131 - AluY SINE Alu -9 302 1 2181 127 0 10 chr9 71699320 71699634 -70571810 - AluSx SINE Alu -1 311 1 1499 180 0 91 chr9 71699934 71700273 -70571171 - AluJo SINE Alu -4 308 1 324 215 0 0 chr9 71700296 71700361 -70571083 - AluYb8 SINE Alu -142 166 102 * 1698 166 26 12 chr9 71700343 71700686 -70570758 - Tigger1 DNA MER2_type -1653 765 418 227 73 73 0 chr9 71700696 71700751 -70570693 + (TA)n Simple_repeat Simple_repeat 1 59 0 404 54 45 45 chr9 71700872 71700983 -70570461 + (TA)n Simple_repeat Simple_repeat 1 111 0 251 321 123 0 chr9 71701863 71701969 -70569475 - MIR SINE MIR -99 163 45 267 136 0 23 chr9 71702108 71702152 -70569292 - LTR16C LTR ERVL -15 476 434 481 151 183 0 chr9 71702152 71702245 -70569199 - Tigger1 DNA MER2_type 0 2418 2309 6423 69 32 11 chr9 71702245 71703227 -70568217 + L1PA8 LINE L1 5090 6091 -81 2492 46 0 23 chr9 71703227 71703533 -70567911 + AluY SINE Alu 1 299 -12 6423 69 32 11 chr9 71703533 71703613 -70567831 + L1PA8 LINE L1 6091 6168 -4 6584 110 30 68 chr9 71703774 71704323 -70567121 - Tigger1 DNA MER2_type -105 2313 1745 1755 161 3 32 chr9 71704323 71704608 -70566836 - AluJo SINE Alu -19 293 17 6584 110 30 68 chr9 71704608 71704846 -70566598 - Tigger1 DNA MER2_type -673 1745 1500 2224 103 3 0 chr9 71704846 71705136 -70566308 - AluSx SINE Alu -21 291 1 6584 110 30 68 chr9 71705136 71705591 -70565853 - Tigger1 DNA MER2_type -918 1500 1116 296 128 0 0 chr9 71705591 71705638 -70565806 - Tigger1 DNA MER2_type -1275 1143 1097 1027 227 41 26 chr9 71705753 71706097 -70565347 - L1M4c LINE L1 -4749 1635 1287 2314 125 0 0 chr9 71706445 71706750 -70564694 + AluSx SINE Alu 3 307 -5 234 279 0 47 chr9 71708149 71708235 -70563209 + MIR SINE MIR 110 191 -71 549 127 73 45 chr9 71708348 71708458 -70562986 - FLAM_A SINE Alu -4 138 26 1539 91 0 5 chr9 71708972 71709170 -70562274 + AluSg/x SINE Alu 101 297 -15 2260 91 3 0 chr9 71709191 71709500 -70561944 + AluSp SINE Alu 1 310 0 2206 122 0 0 chr9 71710193 71710487 -70560957 + AluSg SINE Alu 1 294 -16 832 273 57 34 chr9 71710873 71711257 -70560187 + LTR16C LTR ERVL 7 399 -92 2569 110 9 33 chr9 71711318 71711737 -70559707 + Tigger1 DNA MER2_type 10 418 -2000 1373 186 72 0 chr9 71711743 71712006 -70559438 + AluJb SINE Alu 1 282 -30 533 72 66 36 chr9 71712008 71712404 -70559040 + (TA)n Simple_repeat Simple_repeat 1 407 0 506 260 68 0 chr9 71712538 71712715 -70558729 + L1M4c LINE L1 1607 1795 -4589 334 241 89 0 chr9 71714916 71714995 -70556449 + MIR3 SINE MIR 82 167 -41 619 222 82 0 chr9 71715156 71715291 -70556153 - FRAM SINE Alu -30 146 1 351 293 136 7 chr9 71715654 71715801 -70555643 - MIR3 SINE MIR -11 197 32 833 305 190 20 chr9 71715870 71716323 -70555121 - L3 LINE CR1 -1 1576 1047 2509 78 0 0 chr9 71716563 71716872 -70554572 - AluY SINE Alu -2 309 1 344 286 118 115 chr9 71716890 71717247 -70554197 + L2 LINE L2 2914 3271 -1 21 0 0 0 chr9 71717715 71717736 -70553708 + AT_rich Low_complexity Low_complexity 1 21 0 2131 123 10 0 chr9 71717937 71718229 -70553215 + AluSg SINE Alu 1 295 -15 22 0 0 0 chr9 71718794 71718816 -70552628 + AT_rich Low_complexity Low_complexity 1 22 0 304 263 136 19 chr9 71719835 71720048 -70551396 + HAL1 LINE L1 143 380 -2127 375 306 112 6 chr9 71720108 71720278 -70551166 + HAL1 LINE L1 478 665 -1842 2110 104 0 40 chr9 71720278 71720605 -70550839 + AluSx SINE Alu 1 315 0 279 256 25 25 chr9 71720705 71720826 -70550618 + HAL1 LINE L1 823 943 -1564 1678 171 22 0 chr9 71721287 71721562 -70549882 - AluSx SINE Alu -31 281 1 2342 102 7 0 chr9 71721653 71721958 -70549486 + AluSq SINE Alu 1 307 -6 2151 102 0 0 chr9 71722440 71722723 -70548721 + AluSq SINE Alu 1 283 -30 2328 66 3 22 chr9 71723170 71723487 -70547957 - AluY SINE Alu 0 311 1 2227 111 0 22 chr9 71723498 71723813 -70547631 - AluSg SINE Alu 0 310 3 871 158 0 0 chr9 71725302 71725435 -70546009 + FLAM_A SINE Alu 1 133 0 933 150 0 0 chr9 71725569 71725702 -70545742 + FLAM_C SINE Alu 1 133 0 2340 93 3 3 chr9 71725829 71726131 -70545313 - AluSx SINE Alu -10 302 1 867 308 107 28 chr9 71726414 71727131 -70544313 - L1MEc LINE L1 -5402 994 221 460 274 20 30 chr9 71727265 71727466 -70543978 - L1MEc LINE L1 -6162 234 36 2239 123 3 0 chr9 71727821 71728123 -70543321 + AluSx SINE Alu 1 303 -9 488 256 40 45 chr9 71728357 71728556 -70542888 - MER63A DNA MER1_type 0 210 13 2172 98 3 0 chr9 71728556 71728842 -70542602 + AluSx SINE Alu 1 287 -25 531 108 47 0 chr9 71728842 71728971 -70542473 + (TA)n Simple_repeat Simple_repeat 1 135 0 1261 137 10 34 chr9 71729665 71729870 -70541574 - AluJb SINE Alu -11 301 102 1997 137 10 0 chr9 71729915 71730207 -70541237 - AluSx SINE Alu -16 296 2 1004 163 6 0 chr9 71730742 71730914 -70540530 - MER2 DNA MER2_type -172 173 1 828 272 52 71 chr9 71731149 71731572 -70539872 - LTR16B LTR ERVL -47 417 3 1682 158 43 7 chr9 71731972 71732251 -70539193 + AluJo SINE Alu 3 291 -21 834 206 14 58 chr9 71732444 71732531 -70538913 - L1MDa LINE L1 -4962 1578 1489 1635 167 44 0 chr9 71732531 71732832 -70538612 - AluJb SINE Alu 0 313 1 834 206 14 58 chr9 71732832 71733054 -70538390 - L1MDa LINE L1 -5051 1489 1280 1909 184 0 0 chr9 71733131 71733463 -70537981 + AluJb SINE Alu 1 312 0 217 0 0 0 chr9 71733411 71733639 -70537805 + (GAAA)n Simple_repeat Simple_repeat 3 230 0 715 171 85 22 chr9 71733648 71733868 -70537576 - LTR8A LTR ERV1 -107 609 315 9591 149 10 9 chr9 71733869 71735049 -70536395 - L1M1 LINE L1 -696 5609 4422 3975 96 39 90 chr9 71735049 71735749 -70535695 + MER4A LTR ERV1 1 664 0 9591 149 10 9 chr9 71735749 71736684 -70534760 - L1M1 LINE L1 -1883 4422 3490 669 254 38 38 chr9 71736683 71736919 -70534525 - L1MDa LINE L1 -5935 605 370 * 672 144 16 0 chr9 71737061 71737186 -70534258 - L1M2 LINE L1 -623 5677 5551 1175 154 0 0 chr9 71737193 71737375 -70534069 - AluSg/x SINE Alu -5 305 124 1627 131 0 35 chr9 71737376 71737764 -70533680 - L1M2 LINE L1 -742 5558 5180 962 243 139 8 chr9 71737767 71738034 -70533410 - L1MDa LINE L1 -6218 322 21 2293 115 0 3 chr9 71738503 71738816 -70532628 - AluSx SINE Alu 0 312 1 619 325 43 11 chr9 71738906 71739094 -70532350 + MER91A DNA MER1_type 3 196 0 1374 204 81 66 chr9 71739732 71740189 -70531255 + MER31B LTR ERV1 1 464 -2 213 370 39 24 chr9 71740348 71740475 -70530969 + MIR SINE MIR 23 151 -57 670 157 0 0 chr9 71740498 71740606 -70530838 - FLAM_A SINE Alu -9 133 26 321 324 49 0 chr9 71741183 71741285 -70530159 + MIR SINE MIR 40 146 -62 414 319 22 7 chr9 71741391 71741529 -70529915 - MIR SINE MIR -106 156 17 1126 191 0 0 chr9 71741714 71741903 -70529541 + MER5A DNA MER1_type 1 189 0 2252 104 0 13 chr9 71742016 71742323 -70529121 + AluSg SINE Alu 1 303 -7 236 261 0 0 chr9 71743049 71743095 -70528349 + L2 LINE L2 3263 3308 -5 2204 109 3 0 chr9 71743186 71743488 -70527956 - AluSq SINE Alu -10 303 1 322 255 112 0 chr9 71743521 71743619 -70527825 - MIR SINE MIR -6 256 148 2200 114 0 0 chr9 71743751 71744049 -70527395 - AluSx SINE Alu -14 298 1 353 323 78 52 chr9 71744726 71744995 -70526449 + L2 LINE L2 2378 2653 -661 26 0 0 0 chr9 71745572 71745598 -70525846 + AT_rich Low_complexity Low_complexity 1 26 0 264 211 0 0 chr9 71746024 71746076 -70525368 - L2 LINE L2 0 3313 3262 318 258 258 15 chr9 71746744 71746876 -70524568 - MIR3 SINE MIR -24 184 21 468 245 35 0 chr9 71747149 71747262 -70524182 - MIR3 SINE MIR -3 205 88 183 100 0 0 chr9 71747473 71747503 -70523941 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 28 79 0 0 chr9 71748041 71748104 -70523340 + AT_rich Low_complexity Low_complexity 1 63 0 2116 128 0 0 chr9 71748463 71748752 -70522692 - AluSg SINE Alu -19 291 3 1108 76 0 0 chr9 71748760 71748891 -70522553 - AluSg SINE Alu -179 131 1 954 163 0 31 chr9 71749236 71749396 -70522048 - FRAM SINE Alu -10 166 12 2365 91 3 3 chr9 71750286 71750584 -70520860 - AluSp SINE Alu -15 298 1 323 257 104 3 chr9 71750859 71751019 -70520425 - MIR SINE MIR -1 261 42 282 56 0 0 chr9 71751128 71751164 -70520280 + (TATG)n Simple_repeat Simple_repeat 3 38 0 410 258 84 60 chr9 71751260 71751427 -70520017 + MIR SINE MIR 20 190 -72 389 252 111 7 chr9 71752048 71752183 -70519261 + MER117 DNA MER1_type 1 149 -48 2297 107 0 0 chr9 71752477 71752775 -70518669 - AluSx SINE Alu -13 299 2 229 301 29 22 chr9 71753540 71753676 -70517768 + HAL1 LINE L1 1455 1591 -916 520 149 234 9 chr9 71753720 71753827 -70517617 + AluJb SINE Alu 1 131 -181 1833 188 0 0 chr9 71753932 71754240 -70517204 + AluJb SINE Alu 1 308 -4 784 291 63 0 chr9 71754764 71755001 -70516443 - MIR SINE MIR 0 262 11 21 36 0 0 chr9 71755726 71755754 -70515690 + AT_rich Low_complexity Low_complexity 1 28 0 375 295 58 23 chr9 71755851 71756024 -70515420 + L1M3 LINE L1 4524 4702 -1444 2541 179 74 20 chr9 71756061 71756664 -70514780 + L1MB8 LINE L1 4646 5351 -827 2219 93 3 16 chr9 71756664 71756977 -70514467 + AluSc SINE Alu 1 309 0 2541 179 74 20 chr9 71756977 71757431 -70514013 + L1MB8 LINE L1 5351 5779 -399 2280 101 3 16 chr9 71757432 71757748 -70513696 + AluSx SINE Alu 1 312 0 564 176 15 102 chr9 71757776 71757923 -70513521 + L1MB8 LINE L1 5981 6107 -71 2208 110 3 0 chr9 71757923 71758223 -70513221 + AluSg SINE Alu 2 302 -8 564 176 15 102 chr9 71758223 71758280 -70513164 + L1MB8 LINE L1 6107 6167 -11 235 238 160 82 chr9 71758350 71758619 -70512825 + L1M3 LINE L1 4723 5012 -1134 2323 119 0 0 chr9 71758713 71759023 -70512421 + AluSx SINE Alu 1 310 -2 369 214 226 57 chr9 71759062 71759310 -70512134 + L1M3 LINE L1 5256 5545 -623 335 361 42 0 chr9 71759770 71759889 -70511555 + L2 LINE L2 3149 3272 0 2186 96 0 48 chr9 71760221 71760535 -70510909 + AluSx SINE Alu 1 299 -13 953 105 0 0 chr9 71761364 71761497 -70509947 + FLAM_C SINE Alu 1 133 0 1145 133 0 6 chr9 71761604 71761777 -70509667 - AluJb SINE Alu -38 274 103 29 47 0 0 chr9 71761923 71761966 -70509478 + AT_rich Low_complexity Low_complexity 1 43 0 394 222 290 0 chr9 71762545 71762707 -70508737 - MER3 DNA MER1_type 0 209 1 2178 111 0 7 chr9 71764093 71764391 -70507053 + AluSg SINE Alu 1 296 -14 240 253 69 11 chr9 71764683 71764770 -70506674 + HAL1 LINE L1 2306 2397 -110 192 40 0 0 chr9 71764837 71764862 -70506582 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1708 166 14 4 chr9 71765037 71765166 -70506278 + AluSx SINE Alu 1 127 -185 297 0 0 0 chr9 71765166 71765199 -70506245 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1708 166 14 4 chr9 71765199 71765346 -70506098 + AluSx SINE Alu 127 280 -32 407 302 149 20 chr9 71766266 71766561 -70504883 - HAL1 LINE L1 -1023 1484 1152 504 303 90 14 chr9 71767005 71767194 -70504250 + MIR3 SINE MIR 6 206 -2 2485 74 0 3 chr9 71767309 71767621 -70503823 + AluY SINE Alu 1 311 0 24 53 0 0 chr9 71767655 71767693 -70503751 + AT_rich Low_complexity Low_complexity 1 38 0 1442 133 197 9 chr9 71767844 71768174 -70503270 - L1MB4 LINE L1 0 6180 5789 3340 191 115 21 chr9 71768178 71768866 -70502578 - MER21B LTR ERV1 -11 852 81 2382 76 6 16 chr9 71768866 71769180 -70502264 + AluY SINE Alu 1 311 0 3340 191 115 21 chr9 71769180 71769266 -70502178 - MER21B LTR ERV1 -782 81 5 911 149 6 52 chr9 71769406 71769580 -70501864 - AluSg/x SINE Alu -17 292 127 801 189 65 7 chr9 71769744 71769897 -70501547 + FRAM SINE Alu 1 159 -17 513 224 28 84 chr9 71770245 71770388 -70501056 - MIR SINE MIR -86 176 42 207 0 0 0 chr9 71771740 71771763 -70499681 + (CA)n Simple_repeat Simple_repeat 2 24 0 1664 136 88 0 chr9 71772316 71772589 -70498855 + AluJb SINE Alu 1 297 -15 2074 102 0 25 chr9 71773408 71773692 -70497752 + AluSp SINE Alu 1 277 -36 207 0 0 0 chr9 71773697 71773720 -70497724 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 831 152 0 0 chr9 71773774 71773899 -70497545 + AluJb SINE Alu 1 125 -187 1999 130 14 3 chr9 71773904 71774196 -70497248 + AluSx SINE Alu 6 300 -12 285 335 25 75 chr9 71775382 71775444 -70496000 + L2 LINE L2 2721 2785 -529 2086 104 45 7 chr9 71775444 71775732 -70495712 + AluSg SINE Alu 4 302 -8 285 335 25 75 chr9 71775732 71775908 -70495536 + L2 LINE L2 2785 2947 -367 2292 67 0 11 chr9 71775926 71776233 -70495211 + AluY SINE Alu 1 304 0 249 287 35 70 chr9 71776400 71776543 -70494901 + L2 LINE L2 1884 2021 -1293 288 306 158 54 chr9 71776923 71777145 -70494299 + L2 LINE L2 2713 2957 -357 510 91 0 0 chr9 71777516 71777593 -70493851 - HY3 scRNA scRNA -2 99 23 394 71 71 0 chr9 71778246 71778316 -70493128 - L1MA4A LINE L1 0 6303 6229 187 261 45 45 chr9 71778551 71778639 -70492805 + MIR SINE MIR 118 205 -57 238 301 88 22 chr9 71778951 71779087 -70492357 - MIR SINE MIR -105 157 13 418 218 62 109 chr9 71779196 71779389 -70492055 + L2 LINE L2 3103 3286 -27 335 280 253 22 chr9 71779955 71780180 -70491264 + L1ME LINE L1 4946 5222 -924 1667 83 0 5 chr9 71780181 71780398 -70491046 - AluSg/x SINE Alu -12 300 85 377 200 61 81 chr9 71780439 71780685 -70490759 + L1ME LINE L1 5408 5647 -523 671 256 118 73 chr9 71780714 71780805 -70490639 + MER20B DNA MER1_type 64 149 -634 1685 141 0 79 chr9 71780805 71781110 -70490334 + AluJb SINE Alu 5 322 0 271 81 0 0 chr9 71781110 71781147 -70490297 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 671 256 118 73 chr9 71781147 71781522 -70489922 + MER20B DNA MER1_type 149 552 -231 213 305 0 0 chr9 71781522 71781581 -70489863 - MER5A DNA MER1_type 0 189 131 1447 163 0 34 chr9 71781586 71781825 -70489619 + AluJo SINE Alu 1 231 -81 195 69 0 0 chr9 71781862 71781891 -70489553 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 323 244 81 0 chr9 71781894 71781980 -70489464 - MER5A DNA MER1_type -84 105 13 250 219 0 27 chr9 71781994 71782067 -70489377 + MER20B DNA MER1_type 551 621 -162 296 262 80 3 chr9 71782159 71782335 -70489109 + L1ME LINE L1 5663 5858 -312 2376 75 3 13 chr9 71782567 71782873 -70488571 - AluSp SINE Alu -10 303 1 294 323 48 32 chr9 71783037 71783161 -70488283 + MIR SINE MIR 16 141 -67 2418 68 0 3 chr9 71783178 71783472 -70487972 + AluSq SINE Alu 12 304 -9 190 356 78 9 chr9 71783936 71784051 -70487393 - MIR SINE MIR -62 146 24 995 88 7 22 chr9 71787521 71787658 -70483786 + AluSq/x SINE Alu 1 135 -178 2047 107 17 10 chr9 71787658 71787957 -70483487 + AluSx SINE Alu 1 301 -11 333 315 138 17 chr9 71788331 71788563 -70482881 - L2 LINE L2 -1 3312 3053 1410 78 128 0 chr9 71789294 71789498 -70481946 - MER30 DNA MER1_type 0 230 1 400 291 120 30 chr9 71789682 71789916 -70481528 + L3 LINE CR1 1230 1484 -93 186 319 44 44 chr9 71790055 71790146 -70481298 + MIR SINE MIR 16 106 -102 2161 113 17 0 chr9 71790242 71790535 -70480909 - AluSx SINE Alu -14 298 1 364 269 34 36 chr9 71790851 71791016 -70480428 - L1MC4a LINE L1 -344 5818 5681 253 373 19 32 chr9 71791037 71791195 -70480249 - L2 LINE L2 -39 3274 3119 894 180 180 0 chr9 71791721 71791921 -70479523 - MER46A DNA MER2_type 0 236 1 341 266 63 25 chr9 71791957 71792115 -70479329 - MIR SINE MIR -28 234 71 789 226 97 24 chr9 71792558 71792927 -70478517 + L1ME2 LINE L1 5696 6163 -1 2044 113 0 4 chr9 71792959 71793234 -70478210 + AluSq SINE Alu 1 274 -39 3569 108 23 21 chr9 71793534 71794060 -70477384 + MER1A DNA MER1_type 1 527 0 2249 115 13 3 chr9 71794903 71795207 -70476237 - AluSc SINE Alu -2 307 1 5650 103 18 42 chr9 71795901 71796795 -70474649 + MER4D LTR ERV1 1 872 0 2214 108 3 0 chr9 71796973 71797297 -70474147 - AluSg SINE Alu 0 310 1 700 320 185 26 chr9 71797312 71797906 -70473538 + L2 LINE L2 149 647 -2667 2119 118 0 7 chr9 71797906 71798195 -70473249 + AluSg SINE Alu 1 287 -23 700 320 185 26 chr9 71798195 71798318 -70473126 + L2 LINE L2 647 749 -2565 2006 140 7 10 chr9 71798318 71798626 -70472818 - AluSx SINE Alu -5 307 1 700 320 185 26 chr9 71798626 71798761 -70472683 + L2 LINE L2 749 1138 -2176 399 267 119 59 chr9 71798769 71798971 -70472473 + L2 LINE L2 1444 1657 -1657 1472 109 5 0 chr9 71800297 71800489 -70470955 + AluSx SINE Alu 1 193 -119 782 215 82 10 chr9 71801277 71801472 -70469972 + MER3 DNA MER1_type 1 209 0 316 370 79 23 chr9 71801795 71802138 -70469306 + HAL1 LINE L1 1093 1454 -1053 216 184 0 0 chr9 71802293 71802342 -70469102 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 461 269 156 16 chr9 71802354 71802610 -70468834 + L2 LINE L2 3009 3300 -13 4029 132 11 20 chr9 71802777 71803416 -70468028 - MER41B LTR ERV1 0 635 3 1287 96 0 0 chr9 71803718 71803884 -70467560 - AluY SINE Alu -10 301 136 371 194 28 0 chr9 71803894 71803966 -70467478 - MER97b DNA MER1_type? -941 112 39 380 200 25 58 chr9 71804563 71804683 -70466761 + L2 LINE L2 2921 3036 -277 453 195 80 18 chr9 71804689 71804802 -70466642 + L2 LINE L2 3178 3297 -16 189 0 0 0 chr9 71804964 71804985 -70466459 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1031 123 14 0 chr9 71804987 71805133 -70466311 - AluSg/x SINE Alu -31 279 132 803 117 19 7 chr9 71805274 71805428 -70466016 + GA-rich Low_complexity Low_complexity 1 156 0 1695 155 6 62 chr9 71805460 71805782 -70465662 + AluJb SINE Alu 1 304 -8 875 295 78 50 chr9 71805930 71806399 -70465045 + L1MC4a LINE L1 5258 5749 -416 2306 103 3 0 chr9 71806399 71806700 -70464744 + AluSp SINE Alu 1 302 -11 875 295 78 50 chr9 71806700 71806872 -70464572 + L1MC4a LINE L1 5749 5915 -250 918 167 17 99 chr9 71807399 71807632 -70463812 - MER20B DNA MER1_type -1 218 5 270 221 87 58 chr9 71807718 71807822 -70463622 + L1ME4a LINE L1 6015 6121 0 209 0 97 0 chr9 71809224 71809255 -70462189 + (TTTAA)n Simple_repeat Simple_repeat 1 34 0 1682 166 32 7 chr9 71809635 71809936 -70461508 - AluJb SINE Alu 0 308 1 2343 81 13 0 chr9 71809940 71810238 -70461206 - AluY SINE Alu -9 302 1 207 286 199 12 chr9 71810355 71810516 -70460928 + MIR3 SINE MIR 10 200 -8 2336 175 52 7 chr9 71810619 71811060 -70460384 - LOR1b LTR ERV1 0 461 1 1771 176 181 21 chr9 71811203 71811628 -70459816 + MLT1D LTR MaLR 5 497 -8 2318 110 0 0 chr9 71812476 71812775 -70458669 + AluSq SINE Alu 1 299 -14 4222 143 14 48 chr9 71812851 71813000 -70458444 - MER50 LTR ERV1 -23 711 558 1971 152 13 0 chr9 71813000 71813302 -70458142 + AluSx SINE Alu 1 306 -6 4222 143 14 48 chr9 71813302 71813886 -70457558 - MER50 LTR ERV1 -176 558 3 2349 101 0 13 chr9 71814377 71814685 -70456759 + AluSg SINE Alu 1 304 -6 2252 90 13 0 chr9 71815043 71815343 -70456101 + AluSx SINE Alu 1 304 -8 333 263 12 0 chr9 71815448 71815528 -70455916 - L2 LINE L2 -2 3311 3231 2272 106 3 0 chr9 71815707 71816000 -70455444 + AluSq SINE Alu 11 304 -9 2136 155 38 40 chr9 71816111 71816510 -70454934 + MLT2D LTR ERVL 17 414 0 272 330 119 6 chr9 71816683 71816859 -70454585 - L2 LINE L2 -552 2762 2567 383 243 243 12 chr9 71816872 71817127 -70454317 - L2 LINE L2 -12 3301 2988 621 279 56 28 chr9 71817178 71817429 -70454015 - L2 LINE L2 -963 2351 2094 226 361 28 23 chr9 71817906 71818034 -70453410 + MIR SINE MIR 15 141 -67 2432 83 0 3 chr9 71818229 71818531 -70452913 + AluY SINE Alu 1 301 -10 1186 208 43 49 chr9 71819216 71819410 -70452034 + Charlie4a DNA MER1_type 5 198 -1763 2452 75 0 10 chr9 71819410 71819718 -70451726 - AluY SINE Alu -6 305 1 1186 208 43 49 chr9 71819718 71819893 -70451551 + Charlie4a DNA MER1_type 198 372 -136 3229 122 56 21 chr9 71819928 71820293 -70451151 - MER39B LTR ERV1 -118 535 145 2129 137 9 29 chr9 71820293 71820637 -70450807 + MER1B DNA MER1_type 1 337 0 3229 122 56 21 chr9 71820637 71820788 -70450656 - MER39B LTR ERV1 -508 145 1 658 280 31 40 chr9 71820813 71821107 -70450337 - MLT1G LTR MaLR -320 275 1 1214 85 7 0 chr9 71821663 71821816 -70449628 + AluJo SINE Alu 22 175 -137 1952 139 10 26 chr9 71822139 71822442 -70449002 + AluSx SINE Alu 1 298 -14 1174 201 76 0 chr9 71822475 71822699 -70448745 - MLT1A1 LTR MaLR -124 241 1 1194 344 34 9 chr9 71822706 71824130 -70447314 - HERV16 LTR ERVL -1742 3912 2386 1333 329 73 61 chr9 71824210 71824298 -70447146 - HERV16 LTR ERVL -3122 1874 1789 2701 49 0 0 chr9 71824298 71824604 -70446840 - AluY SINE Alu -5 306 1 1333 329 73 61 chr9 71824604 71825603 -70445841 - HERV16 LTR ERVL -3207 1789 699 1662 168 10 39 chr9 71825603 71825934 -70445510 - AluJo SINE Alu 0 312 6 1333 329 73 61 chr9 71825934 71826278 -70445166 - HERV16 LTR ERVL -4297 699 361 1922 109 50 53 chr9 71826309 71826611 -70444833 + AluSx SINE Alu 1 301 -11 2138 135 0 0 chr9 71826622 71826918 -70444526 + AluSx SINE Alu 1 296 -16 1335 79 101 0 chr9 71827225 71827403 -70444041 - AluY SINE Alu -6 305 110 1995 118 61 10 chr9 71827843 71828139 -70443305 + AluSq SINE Alu 1 311 -2 2385 97 3 0 chr9 71828714 71829022 -70442422 - AluSp SINE Alu -4 309 1 183 227 72 93 chr9 71829070 71829139 -70442305 + MIR SINE MIR 20 88 -174 2154 103 6 26 chr9 71829139 71829451 -70441993 - AluY SINE Alu -5 306 1 183 227 72 93 chr9 71829451 71829478 -70441966 + MIR SINE MIR 88 114 -148 484 202 42 2 chr9 71829617 71829736 -70441708 + MIR SINE MIR 50 187 -21 260 323 75 0 chr9 71829729 71829822 -70441622 + L2 LINE L2 2872 2971 -343 * 429 20 0 0 chr9 71829851 71829901 -70441543 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 310 203 0 0 chr9 71829901 71829960 -70441484 + MIR SINE MIR 201 259 -3 188 370 50 8 chr9 71830161 71830280 -70441164 + MIR SINE MIR 16 139 -69 323 314 186 4 chr9 71830329 71830565 -70440879 + L2 LINE L2 2698 2976 -338 888 151 0 0 chr9 71830580 71830759 -70440685 + (TTGG)n Simple_repeat Simple_repeat 1 179 0 504 0 0 0 chr9 71830889 71830945 -70440499 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 765 216 13 20 chr9 71830945 71831098 -70440346 - AluJb SINE Alu -27 285 134 235 259 121 0 chr9 71831176 71831234 -70440210 + MER45 DNA AcHobo 2 66 -887 576 322 40 22 chr9 71831281 71831508 -70439936 + MIR SINE MIR 1 231 -31 23 0 0 0 chr9 71831541 71831564 -70439880 + AT_rich Low_complexity Low_complexity 1 23 0 230 85 68 0 chr9 71831803 71831862 -70439582 + (TA)n Simple_repeat Simple_repeat 2 64 0 235 259 121 0 chr9 71831886 71831944 -70439500 + MER45 DNA AcHobo 2 66 -887 580 316 40 22 chr9 71831993 71832218 -70439226 + MIR SINE MIR 3 231 -31 23 0 0 0 chr9 71832251 71832274 -70439170 + AT_rich Low_complexity Low_complexity 1 23 0 1435 159 98 29 chr9 71832417 71832693 -70438751 - AluSq SINE Alu -16 297 3 2240 90 10 3 chr9 71832740 71833030 -70438414 - AluSq SINE Alu -21 292 1 280 301 49 41 chr9 71833455 71833578 -70437866 - MER5A DNA MER1_type -3 186 63 2006 132 7 3 chr9 71833669 71833965 -70437479 - AluSq SINE Alu -16 297 1 190 280 20 0 chr9 71834033 71834083 -70437361 - L3 LINE CR1 -178 1399 1349 2328 88 3 7 chr9 71834387 71834683 -70436761 - AluSp SINE Alu -18 295 1 2028 116 0 0 chr9 71835043 71835318 -70436126 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr9 71835319 71835339 -70436105 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2234 99 0 0 chr9 71835546 71835849 -70435595 - AluSc SINE Alu 0 303 1 323 300 77 42 chr9 71836707 71837017 -70434427 - L1MC4a LINE L1 -1866 5942 5622 2367 80 6 6 chr9 71837075 71837386 -70434058 + AluSq SINE Alu 1 311 -2 198 0 0 0 chr9 71837604 71837626 -70433818 + (TG)n Simple_repeat Simple_repeat 2 23 0 867 86 9 0 chr9 71837761 71837877 -70433567 - AluSp/q SINE Alu -11 302 186 241 235 8 152 chr9 71838005 71838071 -70433373 - L1ME LINE L1 -462 5659 5619 2254 82 7 0 chr9 71838071 71838372 -70433072 + AluSp SINE Alu 1 303 0 241 235 8 152 chr9 71838372 71838436 -70433008 - L1ME LINE L1 -502 5619 5547 760 256 8 17 chr9 71838919 71839157 -70432287 + L1ME3 LINE L1 5898 6133 -29 274 274 69 29 chr9 71839237 71839339 -70432105 - L2 LINE L2 -545 2769 2664 2190 112 33 0 chr9 71839359 71839662 -70431782 - AluSq SINE Alu 0 313 1 393 284 112 0 chr9 71839920 71840036 -70431408 + L2 LINE L2 3141 3269 -3 249 268 70 0 chr9 71840471 71840542 -70430902 + MIR3 SINE MIR 82 157 -51 232 247 101 22 chr9 71841234 71841323 -70430121 - MER103 DNA DNA -63 103 8 2200 123 0 0 chr9 71841362 71841664 -70429780 - AluSx SINE Alu -10 302 1 264 326 82 0 chr9 71841831 71841929 -70429515 - MIR SINE MIR -97 165 60 2599 48 3 0 chr9 71841988 71842298 -70429146 + AluY SINE Alu 1 311 0 794 221 137 79 chr9 71842506 71842855 -70428589 + L1MDa LINE L1 1776 2173 -4367 2218 67 3 3 chr9 71842855 71843165 -70428279 + AluY SINE Alu 1 310 0 794 221 137 79 chr9 71843165 71843384 -70428060 + L1MDa LINE L1 2173 2378 -4162 492 282 10 10 chr9 71843731 71843879 -70427565 + MER5B DNA MER1_type 41 177 -1 867 178 72 22 chr9 71843888 71844068 -70427376 - MER5A DNA MER1_type 0 189 1 342 325 8 8 chr9 71844068 71844185 -70427259 - MIR3 SINE MIR -48 160 44 204 298 0 18 chr9 71844964 71845021 -70426423 + MER5A DNA MER1_type 116 171 -18 208 103 0 51 chr9 71845533 71845572 -70425872 + (CATA)n Simple_repeat Simple_repeat 3 39 0 2960 189 47 50 chr9 71845982 71846169 -70425275 + L1MB7 LINE L1 5209 5395 -789 2092 122 0 0 chr9 71846169 71846455 -70424989 + AluSg SINE Alu 1 286 -24 213 39 0 0 chr9 71846462 71846488 -70424956 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 2960 189 47 50 chr9 71846488 71846529 -70424915 + L1MB7 LINE L1 5401 5441 -743 2320 112 0 0 chr9 71846529 71846834 -70424610 + AluSg SINE Alu 1 305 -5 2960 189 47 50 chr9 71846834 71847580 -70423864 + L1MB7 LINE L1 5441 6184 0 2380 109 0 3 chr9 71849149 71849460 -70421984 + AluSx SINE Alu 1 310 -2 186 296 190 22 chr9 71850097 71850276 -70421168 - MIR SINE MIR -42 220 12 843 211 47 77 chr9 71850370 71850418 -70421026 - L1ME3 LINE L1 -1 6161 6113 2166 110 0 3 chr9 71850418 71850710 -70420734 - AluSc SINE Alu -18 291 1 843 211 47 77 chr9 71850710 71850960 -70420484 - L1ME3 LINE L1 -49 6113 5872 2126 122 0 7 chr9 71851054 71851349 -70420095 + AluSx SINE Alu 1 293 -19 24 77 0 0 chr9 71851353 71851405 -70420039 + AT_rich Low_complexity Low_complexity 1 52 0 222 359 55 8 chr9 71852701 71852786 -70418658 + MER5B DNA MER1_type 26 120 -58 2572 44 0 0 chr9 71852786 71853083 -70418361 - AluY SINE Alu -14 297 1 222 359 55 8 chr9 71853083 71853125 -70418319 + MER5B DNA MER1_type 120 159 -19 2093 119 3 0 chr9 71853619 71853912 -70417532 - AluSp SINE Alu -18 295 2 2115 100 31 3 chr9 71854006 71854297 -70417147 - AluSq SINE Alu -14 299 1 511 279 100 24 chr9 71854538 71854921 -70416523 + L1ME LINE L1 5366 5718 -444 2144 128 6 6 chr9 71854921 71855233 -70416211 + AluSx SINE Alu 1 312 0 2397 90 0 6 chr9 71855237 71855549 -70415895 + AluSq SINE Alu 1 310 -3 511 279 100 24 chr9 71855549 71855581 -70415863 + L1ME LINE L1 5720 5818 -344 21 0 0 0 chr9 71855803 71855824 -70415620 + AT_rich Low_complexity Low_complexity 1 21 0 2209 116 0 3 chr9 71856300 71856601 -70414843 - AluSx SINE Alu -11 301 2 2255 103 3 0 chr9 71856907 71857199 -70414245 + AluSq SINE Alu 3 295 -18 21 36 0 0 chr9 71857342 71857370 -70414074 + AT_rich Low_complexity Low_complexity 1 28 0 2183 116 0 13 chr9 71857468 71857771 -70413673 - AluSg SINE Alu -10 300 2 463 204 260 0 chr9 71858213 71858409 -70413035 + L1M4 LINE L1 4301 4547 -1599 330 123 18 8 chr9 71858410 71858634 -70412810 + AluSx SINE Alu 1 298 -3 1229 205 3 14 chr9 71858648 71858936 -70412508 + L1M4 LINE L1 4540 4824 -1322 396 195 39 39 chr9 71858923 71859051 -70412393 + L1MEc LINE L1 1857 1984 -4412 * 1382 198 151 36 chr9 71859090 71859216 -70412228 + L1MEc LINE L1 2713 2823 -3392 2177 119 0 10 chr9 71859216 71859519 -70411925 + AluSq SINE Alu 1 300 -13 1382 198 151 36 chr9 71859519 71860022 -70411422 + L1MEc LINE L1 2823 3414 -2801 1835 115 30 19 chr9 71860022 71860291 -70411153 + AluSx SINE Alu 1 272 -40 3114 116 39 14 chr9 71860291 71860809 -70410635 + LTR10A LTR ERV1 17 547 -62 1311 261 43 63 chr9 71860854 71861944 -70409500 + L1MEc LINE L1 3401 4423 -1792 891 254 72 4 chr9 71861951 71862449 -70408995 + L1MEc LINE L1 4719 5293 -922 1342 160 71 73 chr9 71862461 71862954 -70408490 + LTR49 LTR ERV1 89 600 -22 3073 89 9 18 chr9 71863134 71863572 -70407872 - MER57B LTR ERV1 0 434 1 1154 127 14 66 chr9 71863735 71863947 -70407497 + AluJo SINE Alu 5 205 -107 5262 76 3 4 chr9 71864036 71864732 -70406712 + LTR17 LTR ERV1 6 700 -80 3651 134 77 78 chr9 71864732 71866130 -70405314 - pTR5 LTR ERV1 -1 2437 720 611 110 0 0 chr9 71866102 71866193 -70405251 + LTR17 LTR ERV1 690 780 0 * 336 234 32 0 chr9 71866250 71866344 -70405100 + Charlie1 DNA MER1_type 1465 1561 -1200 2225 108 0 0 chr9 71866395 71866690 -70404754 - AluSq SINE Alu -18 295 1 245 191 206 0 chr9 71866751 71866814 -70404630 - MER34 LTR ERV1 -6 536 461 2166 112 7 0 chr9 71867440 71867734 -70403710 + AluSx SINE Alu 1 296 -16 400 156 26 0 chr9 71869885 71869962 -70401482 - L1ME2 LINE L1 -9 6155 6077 2203 105 3 10 chr9 71869998 71870304 -70401140 + AluSg SINE Alu 1 304 -6 2327 107 0 7 chr9 71871120 71871430 -70400014 - AluSq SINE Alu -3 310 3 1901 158 3 7 chr9 71871986 71872305 -70399139 - AluSx SINE Alu 0 312 5 1119 278 61 20 chr9 71872999 71873517 -70397927 - MER34 LTR ERV1 0 585 1 2121 141 0 13 chr9 71873852 71874156 -70397288 - AluSg SINE Alu -10 300 1 22 35 0 0 chr9 71875387 71875416 -70396028 + AT_rich Low_complexity Low_complexity 1 29 0 2209 71 11 7 chr9 71875830 71876149 -70395295 - AluY SINE Alu 0 320 1 625 224 0 0 chr9 71876556 71876690 -70394754 + MER20 DNA MER1_type 86 219 0 1767 170 0 45 chr9 71877306 71877617 -70393827 + AluJb SINE Alu 4 300 -12 3804 71 73 6 chr9 71877855 71878374 -70393070 - MER41A LTR ERV1 0 554 1 1869 159 11 85 chr9 71878786 71879221 -70392223 - MER57A LTR ERV1 0 403 1 2398 95 7 0 chr9 71879729 71880035 -70391409 - AluSp SINE Alu -5 308 1 983 188 67 18 chr9 71880060 71880284 -70391160 + MER46A DNA MER2_type 1 235 -1 764 121 57 0 chr9 71880475 71880599 -70390845 - AluSg SINE Alu -179 131 1 211 85 43 0 chr9 71881704 71881751 -70389693 + (TA)n Simple_repeat Simple_repeat 2 50 0 2294 75 10 0 chr9 71881753 71882047 -70389397 - AluSp SINE Alu -16 297 1 927 184 181 51 chr9 71882050 71882343 -70389101 + LTR49 LTR ERV1 8 338 -257 * 1260 179 18 5 chr9 71882313 71882537 -70388907 + LTR29 LTR ERV1 396 622 0 2519 81 3 0 chr9 71882613 71882922 -70388522 - AluSp SINE Alu -3 310 1 1770 109 142 0 chr9 71884053 71884320 -70387124 - AluSx SINE Alu -7 305 1 2230 107 3 3 chr9 71884399 71884698 -70386746 - AluSp SINE Alu -14 299 1 591 86 0 12 chr9 71884766 71884847 -70386597 + AluY SINE Alu 2 81 -237 2514 128 67 10 chr9 71885254 71885659 -70385785 + MSTA LTR MaLR 1 428 0 2078 94 7 0 chr9 71885917 71886193 -70385251 - AluSq SINE Alu 0 313 36 252 0 0 0 chr9 71886590 71886618 -70384826 + (TG)n Simple_repeat Simple_repeat 2 29 0 291 252 9 61 chr9 71886656 71886771 -70384673 + CT-rich Low_complexity Low_complexity 1 109 0 2566 119 114 8 chr9 71886855 71887242 -70384202 - MSTA LTR MaLR 0 428 1 2400 106 0 0 chr9 71887785 71888096 -70383348 + AluSq SINE Alu 1 311 -2 2048 117 4 0 chr9 71888099 71888372 -70383072 + AluSq SINE Alu 1 274 -39 188 151 0 19 chr9 71888372 71888425 -70383019 + A-rich Low_complexity Low_complexity 3 54 0 2099 119 3 7 chr9 71888426 71888720 -70382724 - AluSq SINE Alu -20 293 1 23 33 0 0 chr9 71888720 71888750 -70382694 + AT_rich Low_complexity Low_complexity 1 30 0 208 139 0 0 chr9 71888750 71888786 -70382658 + (TAAAAA)n Simple_repeat Simple_repeat 5 40 0 252 312 92 46 chr9 71888833 71888942 -70382502 - MIR SINE MIR -64 144 31 239 127 0 55 chr9 71889374 71889429 -70382015 + (TTTTA)n Simple_repeat Simple_repeat 5 56 0 1277 259 118 53 chr9 71889459 71890300 -70381144 + HAL1 LINE L1 995 1889 -618 1996 107 18 7 chr9 71890614 71890921 -70380523 + AluSq SINE Alu 1 310 0 2115 88 49 11 chr9 71891039 71891323 -70380121 - AluY SINE Alu -16 295 1 472 195 23 0 chr9 71891542 71891629 -70379815 - AluSc SINE Alu -219 90 2 720 173 0 0 chr9 71891667 71891771 -70379673 + FLAM_A SINE Alu 13 116 -26 2162 88 17 10 chr9 71891799 71892096 -70379348 + AluY SINE Alu 1 299 -12 528 287 13 0 chr9 71892096 71892253 -70379191 + MIR SINE MIR 86 244 -18 293 299 104 15 chr9 71892589 71892723 -70378721 - L2 LINE L2 0 3272 3127 1916 91 140 0 chr9 71893015 71893280 -70378164 + AluSx SINE Alu 1 302 0 437 238 169 0 chr9 71893485 71893616 -70377828 - MER5A DNA MER1_type -2 187 23 180 0 0 0 chr9 71893616 71893636 -70377808 + (CTG)n Simple_repeat Simple_repeat 1 20 0 437 238 169 0 chr9 71893636 71893664 -70377780 - MER5A DNA MER1_type -166 23 1 37 0 0 0 chr9 71893763 71893800 -70377644 + AT_rich Low_complexity Low_complexity 1 37 0 183 122 61 0 chr9 71893811 71893860 -70377584 + (TA)n Simple_repeat Simple_repeat 1 52 0 437 256 30 60 chr9 71894805 71894938 -70376506 + MIR SINE MIR 56 184 -78 23 68 0 0 chr9 71895023 71895067 -70376377 + AT_rich Low_complexity Low_complexity 1 44 0 1942 137 3 32 chr9 71895435 71895749 -70375695 + AluJb SINE Alu 1 305 -7 478 315 46 5 chr9 71896452 71896649 -70374795 + MIR SINE MIR 2 206 -56 486 291 41 23 chr9 71896854 71897026 -70374418 - MER5A DNA MER1_type 0 189 15 270 366 0 0 chr9 71897316 71897417 -70374027 + MER5A DNA MER1_type 84 184 -5 4536 136 56 1 chr9 71897520 71898301 -70373143 + L1M4c LINE L1 674 1497 -4887 1091 136 87 5 chr9 71898346 71898552 -70372892 - Tigger7 DNA MER2_type -222 511 289 * 3076 176 40 34 chr9 71898533 71898984 -70372460 + LTR39 LTR ERV1 149 606 -177 1652 127 150 0 chr9 71898984 71899244 -70372200 + AluSx SINE Alu 1 299 -13 3076 176 40 34 chr9 71899244 71899387 -70372057 + LTR39 LTR ERV1 606 747 -36 4666 163 48 25 chr9 71899388 71899509 -70371935 + L1MB3 LINE L1 5152 5269 -914 1935 147 0 3 chr9 71899509 71899801 -70371643 + AluJb SINE Alu 1 291 -21 4666 163 48 25 chr9 71899801 71900435 -70371009 + L1MB3 LINE L1 5269 5925 -258 756 163 7 44 chr9 71900435 71900570 -70370874 + AluJo SINE Alu 2 131 -171 4666 163 48 25 chr9 71900570 71900823 -70370621 + L1MB3 LINE L1 5925 6171 -12 1867 153 45 0 chr9 71901694 71901982 -70369462 - AluJb SINE Alu -11 301 1 24 53 0 0 chr9 71902683 71902721 -70368723 + AT_rich Low_complexity Low_complexity 1 38 0 334 279 35 66 chr9 71903710 71903907 -70367537 + L1ME4a LINE L1 5694 5884 -237 23 54 0 0 chr9 71903991 71904028 -70367416 + AT_rich Low_complexity Low_complexity 1 37 0 414 257 26 40 chr9 71904242 71904394 -70367050 + L1MC4 LINE L1 3660 3809 -2337 2699 198 97 31 chr9 71904409 71905204 -70366240 + L1MC4 LINE L1 4518 5364 -782 911 206 0 12 chr9 71905211 71905381 -70366063 + AluJo SINE Alu 137 304 -8 1513 210 198 8 chr9 71905386 71906040 -70365404 + L1MC4 LINE L1 5364 6154 -12 607 250 110 77 chr9 71906077 71906750 -70364694 + L1MC5 LINE L1 7053 7689 -272 432 294 30 45 chr9 71907571 71907901 -70363543 + L1MC5 LINE L1 7323 7647 -314 2444 93 0 0 chr9 71908053 71908355 -70363089 - AluSx SINE Alu -10 302 1 562 130 10 20 chr9 71908522 71908622 -70362822 + MER4A LTR ERV1 1 99 -565 1386 95 6 0 chr9 71908644 71908823 -70362621 + MER4B LTR ERV1 431 610 0 243 230 0 81 chr9 71909110 71909184 -70362260 + Charlie8 DNA MER1_type 25 92 -2325 261 0 0 0 chr9 71909207 71909236 -70362208 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2078 164 108 16 chr9 71909475 71909903 -70361541 + MLT1C LTR MaLR 1 467 0 286 155 0 17 chr9 71909948 71910006 -70361438 - MER5B DNA MER1_type -16 162 106 637 116 0 12 chr9 71910006 71910092 -70361352 - AluS SINE Alu -226 86 2 1937 87 87 4 chr9 71910147 71910411 -70361033 - AluSc SINE Alu -23 286 1 716 352 110 11 chr9 71910718 71911236 -70360208 - L2 LINE L2 0 3313 2748 284 98 0 98 chr9 71911250 71911301 -70360143 - MER75 DNA T2_type 0 504 459 212 269 39 0 chr9 71911438 71911490 -70359954 + MER5A DNA MER1_type 136 189 0 2157 105 28 0 chr9 71912318 71912603 -70358841 + AluSx SINE Alu 1 293 -19 990 229 99 42 chr9 71912866 71913034 -70358410 - L1ME3A LINE L1 -13 6157 6000 2324 106 0 0 chr9 71913034 71913336 -70358108 - AluSx SINE Alu -10 302 1 990 229 99 42 chr9 71913336 71913520 -70357924 - L1ME3A LINE L1 -170 6000 5785 2809 83 19 28 chr9 71913523 71913817 -70357627 + MER4A LTR ERV1 5 300 -364 4791 148 23 18 chr9 71913817 71914598 -70356846 + LTR1 LTR ERV1 1 785 0 2809 83 19 28 chr9 71914598 71914898 -70356546 + MER4A LTR ERV1 300 664 0 1241 223 112 38 chr9 71914898 71915185 -70356259 - L1ME3A LINE L1 -376 5788 5523 2046 141 10 0 chr9 71915185 71915484 -70355960 - AluSq SINE Alu -11 302 1 1241 223 112 38 chr9 71915484 71915852 -70355592 - L1ME3A LINE L1 -641 5523 5080 296 280 9 0 chr9 71915857 71915964 -70355480 + L1MC/D LINE L1 2546 2653 -3493 * 534 333 82 12 chr9 71915959 71916521 -70354923 + L1MC/D LINE L1 3987 4587 -1559 2183 105 3 3 chr9 71917051 71917347 -70354097 + AluSx SINE Alu 1 296 -16 383 262 121 49 chr9 71917382 71917687 -70353757 + L1MC/D LINE L1 4736 5062 -1084 2744 158 41 42 chr9 71917979 71918382 -70353062 - MER4B LTR ERV1 0 779 211 1870 167 20 0 chr9 71918382 71918687 -70352757 - AluJb SINE Alu -1 311 1 2744 158 41 42 chr9 71918687 71918898 -70352546 - MER4B LTR ERV1 -568 211 1 1310 258 52 31 chr9 71918898 71919343 -70352101 + L1MC/D LINE L1 5284 5737 -2071 1747 173 0 4 chr9 71919359 71919637 -70351807 - AluJb SINE Alu -35 277 1 1258 253 84 63 chr9 71919703 71919931 -70351513 + LTR33 LTR ERVL 1 223 -298 2013 128 0 0 chr9 71919931 71920248 -70351196 - AluSx SINE Alu 0 325 9 1258 253 84 63 chr9 71920248 71920528 -70350916 + LTR33 LTR ERVL 223 521 0 2204 109 0 3 chr9 71920660 71920954 -70350490 - AluSg SINE Alu -17 293 1 4345 196 87 20 chr9 71920958 71921504 -70349940 - L1MD2 LINE L1 -11 6348 5711 1485 179 7 43 chr9 71921504 71921805 -70349639 + AluJo SINE Alu 1 290 -22 4345 196 87 20 chr9 71921805 71922199 -70349245 - L1MD2 LINE L1 -648 5711 5345 1692 91 0 9 chr9 71922234 71922454 -70348990 - AluSq SINE Alu -95 218 1 754 173 56 56 chr9 71922457 71922654 -70348790 + ORSL DNA AcHobo 79 275 0 375 121 0 0 chr9 71922951 71923009 -70348435 + (CA)n Simple_repeat Simple_repeat 2 59 0 261 274 32 71 chr9 71923009 71923199 -70348245 + MIR SINE MIR 17 196 -66 1635 145 41 30 chr9 71923203 71923472 -70347972 + MER1B DNA MER1_type 4 275 -64 21 0 0 0 chr9 71923714 71923735 -70347709 + AT_rich Low_complexity Low_complexity 1 21 0 2064 125 3 0 chr9 71923736 71924025 -70347419 + AluSx SINE Alu 1 290 -22 293 0 0 26 chr9 71924030 71924068 -70347376 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 330 156 16 0 chr9 71924068 71924132 -70347312 - L1MA10 LINE L1 -6 6328 6264 12388 118 26 19 chr9 71924140 71926061 -70345383 + L1P LINE L1 11 1944 -4202 1723 205 34 81 chr9 71926062 71926342 -70345102 - L1ME1 LINE L1 -89 6077 5830 1936 155 3 0 chr9 71926342 71926638 -70344806 + AluSx SINE Alu 1 297 -15 1723 205 34 81 chr9 71926638 71926864 -70344580 - L1ME1 LINE L1 -336 5830 5595 1430 62 11 0 chr9 71926864 71927040 -70344404 - AluY SINE Alu -3 308 131 660 193 89 0 chr9 71927042 71927177 -70344267 - L1ME1 LINE L1 -563 5603 5457 2056 141 0 0 chr9 71927520 71927810 -70343634 - AluSx SINE Alu -18 294 5 1690 130 80 37 chr9 71927815 71928114 -70343330 - AluJb SINE Alu 0 312 1 2452 64 0 7 chr9 71928145 71928440 -70343004 + AluY SINE Alu 2 294 -17 341 274 123 56 chr9 71928498 71928677 -70342767 - LTR33 LTR ERVL -24 497 307 1389 169 17 13 chr9 71929069 71929306 -70342138 - AluJb SINE Alu -12 300 63 819 115 0 0 chr9 71929306 71929410 -70342034 - AluJb SINE Alu -206 106 3 3002 313 56 20 chr9 71929413 71930005 -70341439 - ERVL LTR ERVL -435 5329 4760 2299 102 3 3 chr9 71930005 71930310 -70341134 + AluSx SINE Alu 1 305 -7 3002 313 56 20 chr9 71930310 71930448 -70340996 - ERVL LTR ERVL -1004 4760 4628 2380 48 24 3 chr9 71930448 71930743 -70340701 - AluY SINE Alu -10 301 1 3002 313 56 20 chr9 71930743 71931219 -70340225 - ERVL LTR ERVL -1136 4628 4078 3709 311 55 25 chr9 71931226 71931718 -70339726 - ERVL LTR ERVL -1702 3952 3476 3372 89 7 2 chr9 71931718 71932147 -70339297 - MER57B LTR ERV1 -3 431 1 3709 311 55 25 chr9 71932147 71933662 -70337782 - ERVL LTR ERVL -2178 3476 1889 389 345 68 29 chr9 71933858 71934139 -70337305 - ERVL LTR ERVL -4095 1669 1378 750 213 40 0 chr9 71934278 71934452 -70336992 - MER5A DNA MER1_type -8 181 1 506 245 157 0 chr9 71934495 71934642 -70336802 - MER5A DNA MER1_type -6 183 14 2073 129 0 0 chr9 71935751 71936029 -70335415 + AluSg SINE Alu 1 278 -32 207 0 0 0 chr9 71936031 71936054 -70335390 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2475 92 0 0 chr9 71936054 71936359 -70335085 + AluSc SINE Alu 1 305 -4 557 269 34 7 chr9 71936359 71936508 -70334936 - LTR33 LTR ERVL -14 507 355 * 5042 110 16 39 chr9 71936507 71937278 -70334166 + MER49 LTR ERV1 171 923 0 739 95 0 142 chr9 71937278 71937426 -70334018 + FLAM_A SINE Alu 10 136 -6 753 239 9 68 chr9 71938378 71938600 -70332844 - L1ME3 LINE L1 -22 6140 5932 2594 50 0 0 chr9 72038827 72039126 -70232318 + AluY SINE Alu 5 303 -8 1855 169 9 0 chr9 72039920 72040245 -70231199 + L1MB3 LINE L1 5814 6141 -42 1421 136 75 75 chr9 72040245 72040540 -70230904 + AluSx SINE Alu 1 295 -17 2114 113 7 0 chr9 72040559 72040843 -70230601 + AluSq SINE Alu 1 286 -27 2491 65 3 10 chr9 72040962 72041272 -70230172 + AluY SINE Alu 1 308 -3 2068 121 0 32 chr9 72041349 72041663 -70229781 + AluSx SINE Alu 1 304 -8 1216 247 54 52 chr9 72041683 72042218 -70229226 + L1M4 LINE L1 2300 2835 -3311 1466 175 53 30 chr9 72042219 72042641 -70228803 + AluJo SINE Alu 1 429 0 2329 103 0 3 chr9 72042677 72042988 -70228456 + AluSq SINE Alu 1 310 -3 1125 46 23 0 chr9 72043096 72043226 -70228218 - AluSp SINE Alu -180 133 1 851 146 5 111 chr9 72043288 72043487 -70227957 - FAM SINE Alu -2 47 1 1046 168 0 0 chr9 72043689 72043850 -70227594 - AluJb SINE Alu -9 303 143 2001 154 7 7 chr9 72043864 72044169 -70227275 + AluJb SINE Alu 1 305 -7 2525 48 0 3 chr9 72044214 72044507 -70226937 + AluY SINE Alu 1 292 -19 2426 90 0 0 chr9 72044517 72044816 -70226628 + AluSx SINE Alu 1 299 -13 185 270 0 0 chr9 72044864 72044901 -70226543 - MER5A DNA MER1_type -98 91 55 442 224 20 0 chr9 72045131 72045229 -70226215 - L1MC4 LINE L1 -1181 6861 6762 1724 20 0 5 chr9 72045335 72045533 -70225911 - L1PA4 LINE L1 -32 6123 5927 235 294 193 0 chr9 72045540 72045659 -70225785 - MIR SINE MIR -93 169 28 480 35 0 0 chr9 72046031 72046089 -70225355 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2224 117 0 0 chr9 72046279 72046577 -70224867 + AluSx SINE Alu 1 298 -14 394 215 31 32 chr9 72047040 72047202 -70224242 + MIR SINE MIR 6 160 -62 2274 119 3 3 chr9 72047600 72047912 -70223532 + AluSx SINE Alu 1 312 0 2258 106 0 0 chr9 72048289 72048582 -70222862 + AluSg SINE Alu 11 303 -7 335 303 10 0 chr9 72048608 72048707 -70222737 - L2 LINE L2 -673 2641 2542 1963 247 55 27 chr9 72048707 72049338 -70222106 + L1MD2 LINE L1 4658 5306 -840 2189 122 10 0 chr9 72049345 72049648 -70221796 + AluSx SINE Alu 5 310 -2 402 114 38 0 chr9 72049651 72049730 -70221714 + GA-rich Low_complexity Low_complexity 3 84 0 2790 240 17 42 chr9 72049741 72049774 -70221670 + L1MD2 LINE L1 5339 5371 -988 1843 169 49 30 chr9 72049774 72050142 -70221302 - THE1C LTR MaLR 0 375 1 2790 240 17 42 chr9 72050142 72050533 -70220911 + L1MD2 LINE L1 5371 5736 -623 2129 127 3 10 chr9 72050533 72050840 -70220604 - AluSp SINE Alu -8 305 1 2790 240 17 42 chr9 72050840 72051196 -70220248 + L1MD2 LINE L1 5736 6100 -259 2006 149 91 49 chr9 72051199 72051336 -70220108 - LTR24C LTR ERV1 0 635 505 2318 90 0 0 chr9 72051336 72051625 -70219819 + AluSg SINE Alu 1 289 -21 189 0 0 0 chr9 72051629 72051650 -70219794 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 2006 149 91 49 chr9 72051650 72051958 -70219486 - LTR24C LTR ERV1 -132 503 166 1926 93 0 19 chr9 72052061 72052329 -70219115 + AluSx SINE Alu 50 312 0 698 305 83 65 chr9 72052332 72052381 -70219063 + L1 LINE L1 2865 2912 -3234 2313 91 3 0 chr9 72052381 72052689 -70218755 + AluSc SINE Alu 1 309 0 698 305 83 65 chr9 72052689 72053025 -70218419 + L1 LINE L1 2912 3240 -2906 1669 188 7 7 chr9 72053025 72053333 -70218111 + AluJb SINE Alu 5 312 0 698 305 83 65 chr9 72053333 72053642 -70217802 + L1 LINE L1 3240 3573 -2573 2301 95 0 13 chr9 72053671 72053975 -70217469 + AluSq SINE Alu 1 300 -13 231 234 24 81 chr9 72054145 72054269 -70217175 + L1 LINE L1 3647 3763 -2383 1155 141 0 6 chr9 72054369 72054539 -70216905 + AluSg/x SINE Alu 134 302 -10 467 244 17 64 chr9 72054539 72054711 -70216733 + L1MC4 LINE L1 7566 7729 -313 313 258 65 0 chr9 72054740 72054833 -70216611 + L1MC4 LINE L1 7914 8012 -30 234 156 0 0 chr9 72055374 72055419 -70216025 + GA-rich Low_complexity Low_complexity 2 46 0 1268 126 0 0 chr9 72055487 72055662 -70215782 - AluSc SINE Alu -3 306 132 2519 77 0 0 chr9 72055662 72055962 -70215482 - AluY SINE Alu -11 300 1 8073 142 12 10 chr9 72055972 72056227 -70215217 - L1 LINE L1 -768 5378 5125 2270 112 0 7 chr9 72056227 72056531 -70214913 - AluSx SINE Alu -10 302 1 8073 142 12 10 chr9 72056531 72057639 -70213805 - L1 LINE L1 -1021 5125 4013 2238 113 3 0 chr9 72057659 72057961 -70213483 - AluSx SINE Alu -9 303 1 1906 139 17 3 chr9 72058094 72058381 -70213063 + AluJb SINE Alu 12 302 -10 818 171 0 0 chr9 72058434 72058557 -70212887 + AluJb SINE Alu 4 126 -186 21 0 0 0 chr9 72058557 72058578 -70212866 + AT_rich Low_complexity Low_complexity 1 21 0 2443 97 0 0 chr9 72058578 72058887 -70212557 + AluSc SINE Alu 1 309 0 2189 123 0 0 chr9 72058894 72059220 -70212224 + AluSx SINE Alu 1 326 0 2302 111 0 0 chr9 72059294 72059591 -70211853 + AluSq SINE Alu 1 297 -16 2259 106 0 7 chr9 72059593 72059919 -70211525 + AluSg SINE Alu 1 310 0 2237 85 39 0 chr9 72060213 72060494 -70210950 + AluSq SINE Alu 6 297 -16 2308 105 10 0 chr9 72061310 72061614 -70209830 + AluSg SINE Alu 1 307 -3 301 289 0 67 chr9 72061673 72061748 -70209696 - MIR3 SINE MIR -1 207 143 1863 168 64 9 chr9 72061748 72062094 -70209350 + MLT1A1 LTR MaLR 1 365 0 301 289 0 67 chr9 72062094 72062153 -70209291 - MIR3 SINE MIR -65 143 82 33 0 0 0 chr9 72063262 72063295 -70208149 + AT_rich Low_complexity Low_complexity 1 33 0 814 145 8 0 chr9 72063542 72063673 -70207771 + FLAM_C SINE Alu 2 133 0 295 216 10 49 chr9 72063716 72063818 -70207626 + L1MC5 LINE L1 7832 7929 -32 846 154 16 0 chr9 72064454 72064718 -70206726 + CT-rich Low_complexity Low_complexity 1 268 0 2190 105 0 7 chr9 72065003 72065307 -70206137 + AluY SINE Alu 3 304 -7 1286 201 0 111 chr9 72065523 72065856 -70205588 - AluJo SINE Alu -6 296 1 229 291 101 0 chr9 72066057 72066107 -70205337 - MER117 DNA MER1_type -110 87 25 2031 162 15 25 chr9 72066107 72066501 -70204943 - MLT1B LTR MaLR 0 390 1 229 291 101 0 chr9 72066501 72066529 -70204915 - MER117 DNA MER1_type -172 25 1 727 186 0 76 chr9 72067295 72067440 -70204004 - FLAM_A SINE Alu -8 134 1 213 39 0 0 chr9 72067996 72068022 -70203422 + (TG)n Simple_repeat Simple_repeat 2 27 0 278 246 246 0 chr9 72069411 72069525 -70201919 - MIR SINE MIR 0 262 121 2242 104 0 7 chr9 72069525 72069834 -70201610 + AluSx SINE Alu 1 307 -5 1294 189 25 56 chr9 72069849 72070171 -70201273 + MLT1D LTR MaLR 1 312 -193 204 125 0 0 chr9 72070230 72070262 -70201182 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 984 117 6 22 chr9 72070262 72070441 -70201003 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2118 119 4 0 chr9 72070652 72070954 -70200490 - AluSp SINE Alu 0 307 5 952 155 40 35 chr9 72070985 72071159 -70200285 - FAM SINE Alu 0 175 1 2273 93 0 3 chr9 72071236 72071525 -70199919 + AluSg SINE Alu 1 288 -22 23 33 0 0 chr9 72071525 72071555 -70199889 + AT_rich Low_complexity Low_complexity 1 30 0 641 260 75 9 chr9 72071717 72072155 -70199289 - L1ME4a LINE L1 -2 6119 5623 927 226 83 4 chr9 72072371 72072601 -70198843 - MIR SINE MIR 0 262 15 2712 32 0 25 chr9 72072741 72073056 -70198388 - AluY SINE Alu -4 307 1 2190 82 7 43 chr9 72073056 72073361 -70198083 - AluSp SINE Alu -19 294 1 571 240 86 11 chr9 72074446 72074621 -70196823 - MIR SINE MIR 0 262 75 1571 171 24 58 chr9 72074625 72074917 -70196527 + AluJb SINE Alu 1 282 -30 1693 105 0 14 chr9 72074918 72075137 -70196307 + AluSq SINE Alu 3 218 -95 238 225 0 0 chr9 72075137 72075177 -70196267 + LTR30 LTR ERV1 13 52 -670 995 103 0 146 chr9 72075177 72075390 -70196054 + LTR12 LTR ERV1 53 234 -480 290 148 0 0 chr9 72075451 72075505 -70195939 + LTR12 LTR ERV1 232 285 -429 293 175 48 87 chr9 72075506 72075609 -70195835 + LTR30 LTR ERV1 379 642 -80 590 192 0 0 chr9 72075644 72075743 -70195701 + LTR12 LTR ERV1 616 714 0 712 90 0 10 chr9 72075743 72075843 -70195601 + AluSg/x SINE Alu 204 302 -8 2338 95 3 0 chr9 72075878 72076174 -70195270 + AluSp SINE Alu 5 301 -12 802 185 79 11 chr9 72076505 72076694 -70194750 - L1ME3A LINE L1 -2 6168 5967 2071 136 7 3 chr9 72076876 72077177 -70194267 - AluSx SINE Alu -10 302 1 2195 114 0 0 chr9 72077897 72078243 -70193201 - AluSc SINE Alu 0 346 1 2022 127 0 18 chr9 72078261 72078407 -70193037 - AluJb SINE Alu -33 279 139 2293 98 7 0 chr9 72078407 72078702 -70192742 - AluSg SINE Alu -13 297 1 2022 127 0 18 chr9 72078702 72078839 -70192605 - AluJb SINE Alu -173 139 1 805 206 0 0 chr9 72078839 72078975 -70192469 - AluJo SINE Alu -176 136 1 21 0 0 0 chr9 72080263 72080284 -70191160 + AT_rich Low_complexity Low_complexity 1 21 0 1223 187 0 22 chr9 72080304 72080534 -70190910 + AluJo SINE Alu 1 225 -87 22 56 0 0 chr9 72080554 72080590 -70190854 + AT_rich Low_complexity Low_complexity 1 36 0 2269 94 13 0 chr9 72080808 72081106 -70190338 + AluSg1 SINE Alu 1 302 -7 2097 125 0 0 chr9 72081589 72081870 -70189574 + AluSg SINE Alu 1 281 -29 333 0 0 0 chr9 72081870 72081907 -70189537 + (CA)n Simple_repeat Simple_repeat 2 38 0 2100 129 0 10 chr9 72082274 72082576 -70188868 - AluSx SINE Alu -13 299 1 537 337 152 13 chr9 72082743 72083132 -70188312 - L3 LINE CR1 -869 708 266 1663 221 43 51 chr9 72083163 72083338 -70188106 + MLT1D LTR MaLR 1 176 -329 2018 120 27 13 chr9 72083338 72083639 -70187805 - AluSx SINE Alu -7 305 1 1663 221 43 51 chr9 72083639 72083971 -70187473 + MLT1D LTR MaLR 176 504 -1 1449 199 31 0 chr9 72084234 72084495 -70186949 - AluJb SINE Alu -20 292 24 326 319 35 9 chr9 72084658 72084774 -70186670 + MIR3 SINE MIR 61 179 -29 2376 97 0 0 chr9 72085204 72085504 -70185940 + AluSx SINE Alu 1 300 -12 240 310 115 30 chr9 72085506 72086119 -70185325 + L2 LINE L2 1489 2155 -1159 501 270 147 58 chr9 72086180 72086614 -70184830 - L2 LINE L2 -77 3236 2761 263 343 68 18 chr9 72086644 72086863 -70184581 + L2 LINE L2 2656 2885 -429 588 160 10 0 chr9 72086912 72087012 -70184432 - Charlie5 DNA MER1_type -27 2585 2485 1151 145 0 6 chr9 72087012 72087207 -70184237 - AluJb SINE Alu 0 307 114 1291 123 8 102 chr9 72087827 72088071 -70183373 + AluSg/x SINE Alu 74 294 -16 1762 160 0 37 chr9 72088076 72088376 -70183068 + AluSx SINE Alu 1 289 -23 244 227 30 15 chr9 72089366 72089432 -70182012 - MIR3 SINE MIR -49 159 93 227 250 0 38 chr9 72089627 72089707 -70181737 - MER96B DNA MER1_type? -238 179 103 2200 118 3 3 chr9 72090484 72090789 -70180655 + AluSx SINE Alu 1 305 -7 2037 102 10 30 chr9 72091180 72091484 -70179960 + AluSq SINE Alu 1 298 -15 21 0 0 0 chr9 72093359 72093380 -70178064 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 72094910 72094936 -70176508 + AT_rich Low_complexity Low_complexity 1 26 0 2093 135 3 0 chr9 72095082 72095378 -70176066 + AluSx SINE Alu 1 297 -15 806 147 0 23 chr9 72095427 72095556 -70175888 + FLAM_C SINE Alu 1 126 -7 2450 90 0 0 chr9 72095560 72095861 -70175583 + AluSg SINE Alu 1 301 -9 835 117 0 0 chr9 72096518 72096656 -70174788 - AluSp/q SINE Alu 0 311 174 2379 95 0 3 chr9 72097186 72097490 -70173954 + AluSx SINE Alu 1 303 -9 271 261 11 23 chr9 72097732 72097820 -70173624 - MIR SINE MIR -34 228 142 946 112 8 22 chr9 72099069 72099203 -70172241 + FLAM_C SINE Alu 2 133 -10 2378 90 0 0 chr9 72099895 72100195 -70171249 - AluSc SINE Alu -9 300 1 1964 121 7 7 chr9 72101151 72101432 -70170012 + AluSx SINE Alu 1 281 -31 2470 89 0 0 chr9 72101480 72101782 -70169662 + AluY SINE Alu 1 302 -9 1191 186 64 51 chr9 72102404 72102700 -70168744 - AluJo SINE Alu -1 301 2 697 183 0 8 chr9 72102731 72102851 -70168593 + AluSq/x SINE Alu 2 120 -192 2148 97 14 0 chr9 72103024 72103326 -70168118 - AluSp SINE Alu 0 306 1 1028 236 113 89 chr9 72103950 72104440 -70167004 - MLT1G1 LTR MaLR -15 580 74 2140 112 0 7 chr9 72104440 72104735 -70166709 - AluY SINE Alu -18 293 1 1028 236 113 89 chr9 72104735 72104804 -70166640 - MLT1G1 LTR MaLR -521 74 8 962 171 0 67 chr9 72104847 72105040 -70166404 + FRAM SINE Alu 1 175 -1 2196 109 3 3 chr9 72105401 72105712 -70165732 + AluY SINE Alu 1 311 0 2097 168 35 47 chr9 72105744 72105953 -70165491 - MSTA LTR MaLR -27 401 198 2377 83 0 0 chr9 72105953 72106254 -70165190 - AluY SINE Alu -10 301 1 2097 168 35 47 chr9 72106254 72106450 -70164994 - MSTA LTR MaLR -230 198 1 703 236 38 0 chr9 72107240 72107397 -70164047 + MER63A DNA MER1_type 48 210 0 437 275 93 47 chr9 72107750 72107986 -70163458 - MLT1H LTR MaLR -4 545 292 367 238 0 12 chr9 72108156 72108240 -70163204 - MLT1F LTR MaLR -459 83 1 * 433 222 0 20 chr9 72108240 72108335 -70163109 + MLT1I LTR MaLR 313 405 -4 258 217 289 66 chr9 72108350 72108502 -70162942 - MLT1J2 LTR MaLR 0 450 265 283 183 24 0 chr9 72108766 72108848 -70162596 + GA-rich Low_complexity Low_complexity 2 85 0 1289 315 27 7 chr9 72109082 72109526 -70161918 + L3 LINE CR1 2 454 -1123 2580 56 0 0 chr9 72109691 72110036 -70161408 - AluY SINE Alu 0 345 1 1392 313 40 0 chr9 72110112 72110681 -70160763 + HAL1 LINE L1 1165 1756 -751 290 250 0 25 chr9 72111066 72111146 -70160298 + HAL1 LINE L1 2075 2152 -355 331 156 27 1 chr9 72111157 72111244 -70160200 - L1MA9 LINE L1 -74 6094 6008 2032 105 51 0 chr9 72112002 72112122 -70159322 + AluSc SINE Alu 1 113 -196 369 0 0 0 chr9 72112122 72112163 -70159281 + (CA)n Simple_repeat Simple_repeat 2 42 0 2032 105 51 0 chr9 72112163 72112336 -70159108 + AluSc SINE Alu 113 309 0 312 133 0 0 chr9 72112343 72112403 -70159041 + (TA)n Simple_repeat Simple_repeat 2 61 0 506 281 62 26 chr9 72113040 72113301 -70158143 + L1ME LINE L1 5471 5728 -393 315 0 0 0 chr9 72113543 72113578 -70157866 + (TG)n Simple_repeat Simple_repeat 2 36 0 2123 111 3 13 chr9 72113584 72113882 -70157562 + AluSq SINE Alu 1 295 -18 1998 154 7 0 chr9 72114018 72114317 -70157127 - AluSx SINE Alu -11 301 1 218 284 54 14 chr9 72114458 72114532 -70156912 - MIR SINE MIR -62 146 70 2494 53 7 13 chr9 72114799 72115100 -70156344 - AluY SINE Alu -12 299 1 761 104 72 24 chr9 72115318 72115443 -70156001 + FLAM_C SINE Alu 2 132 -1 766 135 0 57 chr9 72115756 72115897 -70155547 + FLAM_C SINE Alu 1 133 0 739 210 74 0 chr9 72115944 72116120 -70155324 - MER5A DNA MER1_type 0 189 1 2236 93 4 0 chr9 72117671 72117988 -70153456 + AluSg SINE Alu 1 318 0 1166 196 33 26 chr9 72118018 72118289 -70153155 + AluJo SINE Alu 1 273 -39 1763 119 102 7 chr9 72118307 72118592 -70152852 + AluSx SINE Alu 1 312 0 2175 116 0 13 chr9 72119060 72119361 -70152083 + AluSx SINE Alu 3 299 -13 24 0 0 0 chr9 72119920 72119944 -70151500 + AT_rich Low_complexity Low_complexity 1 24 0 693 196 73 24 chr9 72120690 72120904 -70150540 - MLT1B LTR MaLR -160 214 3 180 234 0 0 chr9 72120924 72120971 -70150473 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 1821 134 39 11 chr9 72121331 72121614 -70149830 + AluJb SINE Alu 3 293 -19 1507 112 86 0 chr9 72121631 72121899 -70149545 + L1MA4 LINE L1 6003 6293 -7 1824 147 7 20 chr9 72121999 72122292 -70149152 + AluJo SINE Alu 20 308 -4 288 0 0 0 chr9 72122297 72122329 -70149115 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 935 99 8 0 chr9 72122329 72122511 -70148933 + AluY SINE Alu 173 355 0 535 281 13 7 chr9 72123153 72123306 -70148138 + MIR SINE MIR 53 206 -56 914 223 49 93 chr9 72123378 72123723 -70147721 - MER102b DNA MER1_type -1 340 11 204 262 36 60 chr9 72123724 72123786 -70147658 - L2 LINE L2 -30 3283 3222 1675 266 37 2 chr9 72123786 72124219 -70147225 + LTR16A LTR ERVL 3 450 0 204 262 36 60 chr9 72124219 72124240 -70147204 - L2 LINE L2 -91 3222 3202 638 146 0 133 chr9 72124436 72124587 -70146857 + FLAM_C SINE Alu 3 133 0 282 175 38 0 chr9 72124609 72124689 -70146755 + GA-rich Low_complexity Low_complexity 5 87 0 1903 63 0 0 chr9 72124871 72125092 -70146352 + AluY SINE Alu 1 221 -90 367 353 87 23 chr9 72125238 72125538 -70145906 + L2 LINE L2 2269 2587 -727 637 109 109 0 chr9 72125594 72125686 -70145758 - THE1B LTR MaLR -52 312 211 378 294 20 20 chr9 72125692 72125838 -70145606 + L2 LINE L2 2642 2787 -527 273 335 61 57 chr9 72126323 72126619 -70144825 - L2 LINE L2 -711 2603 2307 1250 46 0 20 chr9 72126685 72126838 -70144606 + AluY SINE Alu 155 304 -7 2366 87 10 0 chr9 72126847 72127157 -70144287 + AluSp SINE Alu 1 313 0 701 251 69 35 chr9 72127234 72127609 -70143835 + LTR33 LTR ERVL 1 466 -55 2243 97 3 0 chr9 72127609 72127923 -70143521 + AluSp SINE Alu 1 315 0 701 251 69 35 chr9 72127923 72127982 -70143462 + LTR33 LTR ERVL 466 521 0 759 200 87 0 chr9 72128909 72129059 -70142385 + FRAM SINE Alu 1 155 -21 208 208 21 0 chr9 72129378 72129426 -70142018 - L2 LINE L2 -1 3271 3223 463 289 0 0 chr9 72129653 72129788 -70141656 - L3 LINE CR1 -365 1212 1078 2397 84 3 0 chr9 72129829 72130125 -70141319 - AluSp SINE Alu -16 297 1 1057 77 0 0 chr9 72130275 72130405 -70141039 + AluSp/q SINE Alu 171 300 -13 1884 187 0 0 chr9 72130449 72130759 -70140685 - AluJo SINE Alu -2 310 1 682 176 48 0 chr9 72130790 72130915 -70140529 - AluJo SINE Alu -176 136 6 309 255 41 69 chr9 72131317 72131365 -70140079 + L1ME LINE L1 5512 5560 -561 1568 148 34 27 chr9 72131365 72131663 -70139781 - AluJb SINE Alu -12 300 1 309 255 41 69 chr9 72131663 72131759 -70139685 + L1ME LINE L1 5560 5652 -469 1074 133 0 0 chr9 72131789 72131940 -70139504 + AluSg/x SINE Alu 136 286 -26 266 324 140 26 chr9 72133131 72133403 -70138041 - L3b LINE CR1 -3 1580 1278 929 177 39 6 chr9 72133445 72133626 -70137818 - MER5A DNA MER1_type -2 187 1 1103 134 14 4 chr9 72133908 72134126 -70137318 - AluSq SINE Alu -1 312 1 3230 42 0 0 chr9 72134191 72134573 -70136871 - L1PA7 LINE L1 0 6154 5773 232 326 71 0 chr9 72135104 72135223 -70136221 + MIR SINE MIR 18 151 -57 456 290 120 59 chr9 72135227 72135325 -70136119 + L2 LINE L2 2783 2874 -439 2098 108 0 0 chr9 72135325 72135627 -70135817 - AluSg1 SINE Alu 0 302 1 456 290 120 59 chr9 72135627 72135901 -70135543 + L2 LINE L2 2874 3206 -107 1128 191 51 9 chr9 72135901 72136116 -70135328 + MER58A DNA MER1_type 1 224 0 456 290 120 59 chr9 72136116 72136232 -70135212 + L2 LINE L2 3206 3313 0 186 43 0 0 chr9 72136366 72136389 -70135055 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2373 77 0 13 chr9 72136411 72136724 -70134720 - AluSg1 SINE Alu 0 309 1 2507 71 3 13 chr9 72136724 72137034 -70134410 - AluSx SINE Alu -5 307 1 1840 187 18 3 chr9 72137609 72137940 -70133504 + MER58B DNA MER1_type 4 339 -2 590 252 87 52 chr9 72138118 72138368 -70133076 + MIR SINE MIR 6 262 0 244 359 60 0 chr9 72138455 72138572 -70132872 + MIR3 SINE MIR 15 138 -70 1914 111 64 4 chr9 72139001 72139281 -70132163 - AluSx SINE Alu -15 297 1 372 194 130 0 chr9 72139341 72139449 -70131995 + MIR SINE MIR 135 256 -6 194 274 208 0 chr9 72139688 72139794 -70131650 - L3b LINE CR1 -284 1299 1172 299 111 0 19 chr9 72139961 72140015 -70131429 + (TCCC)n Simple_repeat Simple_repeat 3 55 0 802 28 9 9 chr9 72140015 72140121 -70131323 + (TTTC)n Simple_repeat Simple_repeat 4 109 0 1950 113 4 7 chr9 72140133 72140407 -70131037 - AluSx SINE Alu -39 273 1 2580 4 0 0 chr9 72140465 72140736 -70130708 - AluYa5 SINE Alu -5 306 36 2086 114 35 0 chr9 72141058 72141347 -70130097 + AluSq SINE Alu 1 299 -14 40 37 0 0 chr9 72141871 72141925 -70129519 + AT_rich Low_complexity Low_complexity 1 54 0 2456 75 3 7 chr9 72142686 72142993 -70128451 + AluSq SINE Alu 1 306 -7 29 60 0 0 chr9 72143077 72143127 -70128317 + AT_rich Low_complexity Low_complexity 1 50 0 195 42 0 0 chr9 72143163 72143187 -70128257 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 448 360 48 24 chr9 72143188 72143568 -70127876 + L1ME4a LINE L1 4690 5074 -1072 412 321 82 46 chr9 72143626 72143743 -70127701 + L1ME4a LINE L1 5628 5739 -382 2236 124 39 33 chr9 72143743 72144105 -70127339 - THE1B LTR MaLR 0 364 1 412 321 82 46 chr9 72144105 72144267 -70127177 + L1ME4a LINE L1 5739 5917 -204 2391 89 0 0 chr9 72144494 72144798 -70126646 + AluY SINE Alu 1 304 -7 680 292 59 79 chr9 72145345 72145917 -70125527 + L2 LINE L2 2720 3305 -8 355 326 83 52 chr9 72146107 72146195 -70125249 - L2 LINE L2 0 3272 3188 2129 117 0 0 chr9 72146195 72146512 -70124932 + AluSx SINE Alu 2 318 0 355 326 83 52 chr9 72146512 72146830 -70124614 - L2 LINE L2 -84 3188 2852 206 348 18 18 chr9 72146985 72147097 -70124347 - L2 LINE L2 -482 2832 2721 222 37 0 0 chr9 72147503 72147530 -70123914 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2181 101 4 0 chr9 72147537 72147815 -70123629 - AluSp SINE Alu -33 280 2 1410 298 57 2 chr9 72147976 72148396 -70123048 - LTR16A LTR ERVL 0 450 8 2071 148 0 7 chr9 72148418 72148723 -70122721 - AluSx SINE Alu -8 304 2 392 282 103 0 chr9 72148822 72148939 -70122505 - L2 LINE L2 -4 3268 3140 192 40 0 0 chr9 72148943 72148968 -70122476 + (TAA)n Simple_repeat Simple_repeat 2 26 0 280 156 0 0 chr9 72149014 72149059 -70122385 + Alu SINE Alu 1 45 -258 1539 162 14 54 chr9 72149418 72149714 -70121730 - AluJo SINE Alu -20 292 9 262 270 96 11 chr9 72149731 72149909 -70121535 - L1ME LINE L1 -301 5820 5628 2368 112 0 0 chr9 72149911 72150223 -70121221 - AluSq SINE Alu 0 313 2 611 285 106 52 chr9 72150402 72150826 -70120618 + LTR67 LTR ERVL 97 543 -14 2258 117 0 7 chr9 72151037 72151346 -70120098 + AluSc SINE Alu 1 307 -2 1770 159 4 0 chr9 72151380 72151651 -70119793 + AluSx SINE Alu 36 307 -5 572 303 95 4 chr9 72151919 72152150 -70119294 + MARNA DNA Mariner 159 410 -176 442 289 107 0 chr9 72152198 72152357 -70119087 - MIR SINE MIR -51 211 36 1325 180 100 87 chr9 72152490 72152950 -70118494 + MER31B LTR ERV1 1 466 0 30 0 0 0 chr9 72154226 72154256 -70117188 + AT_rich Low_complexity Low_complexity 1 30 0 300 253 0 13 chr9 72154535 72154614 -70116830 - MLT1K LTR MaLR -2 586 509 23 33 0 0 chr9 72157453 72157483 -70113961 + AT_rich Low_complexity Low_complexity 1 30 0 2161 107 19 3 chr9 72157631 72157939 -70113505 - AluSq SINE Alu 0 313 1 777 232 73 42 chr9 72157990 72158513 -70112931 + L2 LINE L2 2518 3076 -237 2272 92 4 0 chr9 72158513 72158814 -70112630 + AluSp SINE Alu 1 302 0 777 232 73 42 chr9 72158814 72158917 -70112527 + L2 LINE L2 3076 3174 -139 546 219 38 44 chr9 72159198 72159358 -70112086 - L1ME LINE L1 -389 5732 5574 1286 58 0 7 chr9 72159381 72159536 -70111908 + AluY SINE Alu 1 154 -157 337 280 70 21 chr9 72159781 72159924 -70111520 - L1MC4 LINE L1 -368 7674 7525 2415 53 0 0 chr9 72160455 72160739 -70110705 + AluY SINE Alu 1 284 -27 2344 79 0 0 chr9 72161003 72161282 -70110162 + AluSg SINE Alu 1 279 -31 2199 113 0 0 chr9 72162776 72163069 -70108375 + AluSx SINE Alu 5 297 -15 2185 98 7 7 chr9 72163155 72163450 -70107994 + AluSg SINE Alu 1 295 -15 23 86 0 0 chr9 72166624 72166682 -70104762 + GC_rich Low_complexity Low_complexity 1 58 0 291 276 0 0 chr9 72166720 72166796 -70104648 + (CGG)n Simple_repeat Simple_repeat 3 78 0 2372 93 0 10 chr9 72170794 72171106 -70100338 + AluY SINE Alu 1 309 -2 2172 90 0 4 chr9 72172302 72172581 -70098863 + AluSc SINE Alu 1 278 -31 264 77 0 0 chr9 72172584 72172623 -70098821 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1972 144 30 15 chr9 72173204 72173292 -70098152 - MER2 DNA MER2_type 0 344 259 2202 115 0 26 chr9 72173292 72173605 -70097839 + AluSx SINE Alu 1 305 -7 1972 144 30 15 chr9 72173605 72173855 -70097589 - MER2 DNA MER2_type -85 259 1 21 57 0 0 chr9 72173891 72173926 -70097518 + AT_rich Low_complexity Low_complexity 1 35 0 545 310 78 22 chr9 72174390 72174658 -70096786 + L1MC/D LINE L1 5373 5655 -2153 291 208 31 100 chr9 72174942 72175072 -70096372 + HAL1b LINE L1 1226 1346 -2 639 128 0 0 chr9 72175627 72175729 -70095715 - AluJb SINE Alu 0 312 211 2166 110 7 0 chr9 72176127 72176426 -70095018 - AluSg1 SINE Alu -8 301 1 2411 56 0 3 chr9 72176869 72177155 -70094289 + AluY SINE Alu 1 285 -26 198 103 0 0 chr9 72177155 72177184 -70094260 + (TA)n Simple_repeat Simple_repeat 1 29 0 701 152 61 38 chr9 72178711 72178843 -70092601 - FLAM_C SINE Alu -8 135 1 306 0 0 0 chr9 72179371 72179405 -70092039 + (TG)n Simple_repeat Simple_repeat 2 35 0 466 197 68 26 chr9 72179556 72179673 -70091771 - FLAM_A SINE Alu -9 124 3 269 211 195 24 chr9 72183004 72183127 -70088317 - L1ME2 LINE L1 0 6164 6021 689 151 0 0 chr9 72283127 72283233 -69988211 + AluSg/x SINE Alu 193 298 -14 521 227 98 13 chr9 72283249 72283427 -69988017 - MER33 DNA MER1_type -265 59 1 330 322 54 13 chr9 72283612 72283761 -69987683 - MIR3 SINE MIR -36 172 18 280 247 33 20 chr9 72284608 72284758 -69986686 + (TA)n Simple_repeat Simple_repeat 2 153 0 507 209 0 0 chr9 72285592 72285707 -69985737 + (TA)n Simple_repeat Simple_repeat 2 116 0 2180 97 3 19 chr9 72285862 72286173 -69985271 + AluSx SINE Alu 1 306 -6 2123 117 0 10 chr9 72287129 72287427 -69984017 + AluSg SINE Alu 1 295 -15 217 387 71 51 chr9 72287754 72288007 -69983437 + L3b LINE CR1 1294 1551 -32 234 356 11 11 chr9 72288635 72288722 -69982722 - L2 LINE L2 -4 3309 3223 2080 89 0 11 chr9 72288760 72289031 -69982413 - AluSg SINE Alu -5 305 38 589 115 77 10 chr9 72289031 72289135 -69982309 - L1PA11 LINE L1 -8 6166 6056 6202 99 7 0 chr9 72289033 72290349 -69981095 - L1PA11 LINE L1 -10 6164 4810 193 204 143 0 chr9 72290573 72290622 -69980822 - MIR SINE MIR -78 184 129 652 301 19 19 chr9 72290691 72290904 -69980540 - MIR SINE MIR -12 250 38 314 362 107 34 chr9 72290960 72291198 -69980246 + L2 LINE L2 2926 3192 -80 2202 134 0 0 chr9 72291198 72291504 -69979940 - AluSx SINE Alu -6 306 1 314 362 107 34 chr9 72291504 72291563 -69979881 + L2 LINE L2 3192 3245 -27 215 0 67 0 chr9 72291682 72291712 -69979732 + (TTTTTA)n Simple_repeat Simple_repeat 2 33 0 212 276 0 17 chr9 72292135 72292193 -69979251 - MIR SINE MIR -115 147 91 2062 74 41 0 chr9 72293966 72294262 -69977182 + AluY SINE Alu 1 307 0 2454 48 7 0 chr9 72294342 72294636 -69976808 - AluSq SINE Alu -15 298 3 21 36 0 0 chr9 72295114 72295142 -69976302 + AT_rich Low_complexity Low_complexity 1 28 0 2393 242 53 64 chr9 72295687 72296440 -69975004 - L1ME3 LINE L1 -212 5950 5208 727 117 9 18 chr9 72296440 72296551 -69974893 - L1PA8 LINE L1 -7 6165 6056 2393 242 53 64 chr9 72296551 72296790 -69974654 - L1ME3 LINE L1 -954 5208 4968 272 297 27 68 chr9 72296882 72297101 -69974343 - HAL1b LINE L1 -427 921 712 257 207 124 33 chr9 72297108 72297229 -69974215 - HAL1 LINE L1 -344 2163 2032 241 162 9 4 chr9 72297778 72297995 -69973449 + AluJo SINE Alu 1 295 -7 1785 234 46 59 chr9 72298021 72298567 -69972877 - MER77 LTR ERV1 -7 598 60 285 191 155 12 chr9 72298596 72298680 -69972764 - HAL1 LINE L1 -752 1755 1660 1064 175 0 0 chr9 72298735 72298901 -69972543 - AluSc SINE Alu -10 299 134 1739 112 47 93 chr9 72298903 72299225 -69972219 - AluSx SINE Alu -5 307 1 243 259 35 35 chr9 72299271 72299356 -69972088 - HAL1 LINE L1 -1218 1289 1205 2481 71 3 0 chr9 72299493 72299803 -69971641 - AluY SINE Alu 0 311 1 272 322 70 0 chr9 72299876 72299991 -69971453 - HAL1 LINE L1 -2384 123 1 1976 102 0 0 chr9 72299999 72300254 -69971190 + AluSg1 SINE Alu 38 292 -17 305 342 58 17 chr9 72300562 72300762 -69970682 + MIR SINE MIR 2 206 -56 1540 199 49 58 chr9 72301031 72301390 -69970054 + MSTC LTR MaLR 1 357 -71 1834 152 0 7 chr9 72301390 72301667 -69969777 - AluSx SINE Alu -37 275 1 1540 199 49 58 chr9 72301667 72301739 -69969705 + MSTC LTR MaLR 357 428 0 2087 123 0 26 chr9 72301850 72302160 -69969284 + AluSx SINE Alu 1 302 -10 2366 68 0 43 chr9 72302235 72302558 -69968886 - AluY SINE Alu -2 309 1 1081 161 8 174 chr9 72303013 72303443 -69968001 + MER47B DNA MER2_type 1 418 0 2214 116 0 0 chr9 72303489 72303781 -69967663 - AluSx SINE Alu -20 292 1 1727 181 7 3 chr9 72304869 72305172 -69966272 + AluJb SINE Alu 2 305 -7 811 276 43 90 chr9 72305420 72305600 -69965844 - L2 LINE L2 0 3313 3126 2358 97 3 0 chr9 72305600 72305910 -69965534 + AluSx SINE Alu 1 311 -1 811 276 43 90 chr9 72305910 72306111 -69965333 - L2 LINE L2 -187 3126 2967 2248 120 0 0 chr9 72306111 72306419 -69965025 + AluSg SINE Alu 1 308 -2 811 276 43 90 chr9 72306419 72306582 -69964862 - L2 LINE L2 -346 2967 2798 314 179 0 28 chr9 72307754 72307860 -69963584 + A-rich Low_complexity Low_complexity 1 103 0 1787 121 78 18 chr9 72308069 72308350 -69963094 - AluSx SINE Alu -14 298 1 647 207 9 0 chr9 72308480 72308591 -69962853 + MER81 DNA DNA 3 114 0 302 326 14 14 chr9 72308751 72308889 -69962555 + MIR SINE MIR 121 258 -4 2053 119 0 7 chr9 72308894 72309203 -69962241 - AluSx SINE Alu 0 307 1 767 126 0 53 chr9 72309371 72309561 -69961883 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 250 209 0 47 chr9 72309561 72309647 -69961797 + GA-rich Low_complexity Low_complexity 3 84 0 1488 131 161 11 chr9 72309772 72310032 -69961412 + AluSg1 SINE Alu 3 301 -8 373 259 122 16 chr9 72310075 72310269 -69961175 + L1MC4a LINE L1 5641 5771 -396 23 54 0 0 chr9 72310389 72310426 -69961018 + AT_rich Low_complexity Low_complexity 1 37 0 2259 103 3 3 chr9 72310680 72310981 -69960463 + AluSg SINE Alu 1 301 -9 2164 106 0 0 chr9 72311064 72311356 -69960088 - AluSx SINE Alu -1 311 20 2530 43 3 10 chr9 72311424 72311729 -69959715 - AluY SINE Alu -8 303 1 239 384 30 18 chr9 72311762 72311837 -69959607 + L3 LINE CR1 1407 1480 -97 1996 108 44 14 chr9 72311837 72312132 -69959312 - AluSp SINE Alu -9 304 1 239 384 30 18 chr9 72312132 72312220 -69959224 + L3 LINE CR1 1480 1572 -5 517 283 151 10 chr9 72312263 72312468 -69958976 + MIR SINE MIR 29 262 0 891 111 0 134 chr9 72312558 72312730 -69958714 + AluSc SINE Alu 144 292 -17 2172 116 0 3 chr9 72312883 72313176 -69958268 - AluSg SINE Alu -18 292 1 294 155 84 56 chr9 72313179 72313250 -69958194 - L3 LINE CR1 -5 1572 1500 216 86 0 0 chr9 72313250 72313285 -69958159 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1395 81 6 0 chr9 72313287 72313460 -69957984 - AluSp SINE Alu -35 278 105 228 67 0 0 chr9 72313460 72313490 -69957954 + Alu SINE Alu 81 110 -193 2341 101 0 0 chr9 72314159 72314456 -69956988 + AluSg SINE Alu 1 297 -13 474 149 0 0 chr9 72314456 72314530 -69956914 + Alu SINE Alu 234 307 -3 6394 131 15 31 chr9 72314654 72315099 -69956345 - L1MC1 LINE L1 0 6333 5882 2307 82 0 3 chr9 72315099 72315390 -69956054 - AluSc SINE Alu -17 292 3 6394 131 15 31 chr9 72315390 72315891 -69955553 - L1MC1 LINE L1 -451 5882 5401 2443 69 0 7 chr9 72315891 72316195 -69955249 - AluY SINE Alu -9 302 1 6394 131 15 31 chr9 72316195 72316330 -69955114 - L1MC1 LINE L1 -932 5401 5265 1774 160 3 17 chr9 72316695 72317003 -69954441 + AluSx SINE Alu 1 304 0 278 366 21 14 chr9 72317095 72317237 -69954207 - L2 LINE L2 -1103 2211 2069 2154 119 0 10 chr9 72317292 72317595 -69953849 + AluSc SINE Alu 1 300 -9 1545 162 70 4 chr9 72317615 72317886 -69953558 + AluSx SINE Alu 7 295 -17 330 257 37 52 chr9 72317988 72318124 -69953320 + MIR SINE MIR 73 206 -56 1876 115 4 19 chr9 72318442 72318621 -69952823 - AluSx SINE Alu 0 312 137 2361 95 20 0 chr9 72318621 72318927 -69952517 - AluSx SINE Alu 0 312 1 1876 115 4 19 chr9 72318927 72319017 -69952427 - AluSx SINE Alu -175 137 47 649 134 62 0 chr9 72319023 72319120 -69952324 - AluSq/x SINE Alu -209 104 2 1483 133 140 7 chr9 72319324 72319595 -69951849 + AluSq SINE Alu 1 307 -6 2213 107 3 7 chr9 72319811 72320121 -69951323 - AluY SINE Alu -2 309 1 2129 102 3 0 chr9 72320315 72320626 -69950818 - AluSq SINE Alu 0 312 1 261 311 8 50 chr9 72321146 72321265 -69950179 + L2 LINE L2 3134 3247 -25 2092 132 3 3 chr9 72321269 72321565 -69949879 - AluSx SINE Alu -16 296 1 195 100 0 0 chr9 72321599 72321629 -69949815 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2083 125 0 11 chr9 72321631 72321918 -69949526 - AluSc SINE Alu -25 284 1 947 175 105 6 chr9 72322238 72322409 -69949035 - MER5A DNA MER1_type 0 189 2 395 283 66 33 chr9 72322730 72322882 -69948562 + MIR SINE MIR 85 241 -21 189 0 0 0 chr9 72324261 72324282 -69947162 + (CCG)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr9 72324706 72324727 -69946717 + GC_rich Low_complexity Low_complexity 1 21 0 466 231 127 15 chr9 72325962 72326096 -69945348 - MIR3 SINE MIR -27 181 33 22 35 0 0 chr9 72327767 72327796 -69943648 + AT_rich Low_complexity Low_complexity 1 29 0 201 162 0 0 chr9 72331015 72331052 -69940392 + T-rich Low_complexity Low_complexity 2 38 0 191 306 0 20 chr9 72333032 72333081 -69938363 - MIR SINE MIR -190 72 25 1995 96 8 0 chr9 72335911 72336172 -69935272 - AluSp SINE Alu -50 263 1 245 219 451 24 chr9 72336615 72336779 -69934665 + MIR SINE MIR 2 235 -27 2094 97 12 60 chr9 72337234 72337553 -69933891 - AluY SINE Alu -7 304 1 2100 129 0 10 chr9 72340429 72340732 -69930712 - AluSx SINE Alu -12 300 1 189 0 0 0 chr9 72340812 72340833 -69930611 + (TA)n Simple_repeat Simple_repeat 1 21 0 2274 96 3 0 chr9 72340833 72341124 -69930320 - AluSp SINE Alu -21 292 1 422 169 118 9 chr9 72341124 72341275 -69930169 - MER33 DNA MER1_type -8 316 26 2305 135 114 5 chr9 72341286 72341672 -69929772 - MSTA LTR MaLR 0 428 1 2140 101 54 0 chr9 72341873 72342169 -69929275 - AluSx SINE Alu 0 312 1 2474 93 3 0 chr9 72342186 72342498 -69928946 - AluSp SINE Alu 0 313 1 190 305 98 12 chr9 72343053 72343135 -69928309 + MIR SINE MIR 48 136 -126 2233 86 13 33 chr9 72343236 72343540 -69927904 + AluY SINE Alu 1 298 -13 2393 62 3 7 chr9 72344656 72344961 -69926483 + AluY SINE Alu 1 304 -7 191 167 183 33 chr9 72345001 72345061 -69926383 + MER5B DNA MER1_type 81 149 -29 2259 103 3 6 chr9 72345086 72345397 -69926047 + AluSp SINE Alu 1 310 -3 1994 96 0 0 chr9 72345412 72345663 -69925781 + AluSq SINE Alu 1 251 -62 1790 190 13 0 chr9 72345857 72346162 -69925282 - AluSx SINE Alu -3 309 1 360 358 82 10 chr9 72346915 72347122 -69924322 + MIR SINE MIR 20 241 -21 1929 192 64 0 chr9 72347717 72348060 -69923384 + MLT1A1 LTR MaLR 1 365 0 600 194 0 9 chr9 72348665 72348773 -69922671 - MLT1C LTR MaLR -6 461 355 743 179 0 8 chr9 72348773 72348934 -69922510 + FLAM_C SINE Alu 2 143 0 1454 227 30 39 chr9 72348934 72349295 -69922149 - MLT1C LTR MaLR -102 365 8 2236 101 16 0 chr9 72349332 72349638 -69921806 + AluSp SINE Alu 1 311 -2 443 270 59 44 chr9 72349951 72349982 -69921462 + MLT1J2 LTR MaLR 1 30 -420 1928 149 43 139 chr9 72349982 72350498 -69920946 + MER31B LTR ERV1 1 466 0 443 270 59 44 chr9 72350498 72350670 -69920774 + MLT1J2 LTR MaLR 30 207 -243 237 254 0 16 chr9 72350875 72350938 -69920506 + L2 LINE L2 3173 3234 -38 2261 104 3 3 chr9 72350966 72351274 -69920170 - AluSx SINE Alu -4 308 1 2107 117 11 0 chr9 72351389 72351705 -69919739 - AluSp SINE Alu 0 319 1 2152 125 0 0 chr9 72352510 72352797 -69918647 - AluSx SINE Alu -20 292 6 2410 65 0 10 chr9 72353251 72353544 -69917900 + AluY SINE Alu 1 290 -21 828 179 0 19 chr9 72353591 72353747 -69917697 - FRAM SINE Alu -6 170 18 2165 105 13 0 chr9 72353901 72354205 -69917239 + AluSx SINE Alu 3 310 -2 599 105 0 19 chr9 72354215 72354320 -69917124 + L1MA7 LINE L1 6189 6291 0 620 279 10 40 chr9 72354350 72354551 -69916893 + MIR3 SINE MIR 8 202 -6 2198 127 0 13 chr9 72354989 72355303 -69916141 - AluSx SINE Alu -2 310 1 188 242 32 32 chr9 72357448 72357510 -69913934 + L2 LINE L2 3159 3220 -93 201 290 32 0 chr9 72357904 72357966 -69913478 + MIR SINE MIR 189 252 -10 230 320 61 46 chr9 72358041 72358238 -69913206 - L2 LINE L2 -1303 2011 1812 214 354 41 29 chr9 72358393 72358503 -69912941 + MIR SINE MIR 7 125 -83 2028 102 48 10 chr9 72359204 72359498 -69911946 - AluSp SINE Alu -8 305 1 644 199 103 19 chr9 72359662 72359818 -69911626 - MIR SINE MIR -92 170 2 3381 57 2 0 chr9 72360361 72360762 -69910682 + L1PA6 LINE L1 5746 6147 -7 24 0 0 0 chr9 72360764 72360788 -69910656 + AT_rich Low_complexity Low_complexity 1 24 0 720 256 94 18 chr9 72360788 72361011 -69910433 + MIR SINE MIR 20 259 -3 855 183 104 55 chr9 72361046 72361371 -69910073 - MLT1B LTR MaLR 0 390 45 243 88 0 0 chr9 72361372 72361406 -69910038 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2087 120 0 0 chr9 72361414 72361689 -69909755 - AluSg SINE Alu -35 275 1 2192 119 0 0 chr9 72361915 72362208 -69909236 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr9 72362217 72362238 -69909206 + AT_rich Low_complexity Low_complexity 1 21 0 1414 171 98 55 chr9 72362491 72362771 -69908673 + MER58B DNA MER1_type 1 268 -2152 2084 128 7 3 chr9 72362771 72363069 -69908375 - AluSq SINE Alu -14 299 1 1414 171 98 55 chr9 72363069 72363099 -69908345 + MER58B DNA MER1_type 268 295 -2125 2008 151 0 7 chr9 72363099 72363404 -69908040 + AluJb SINE Alu 1 303 -9 1414 171 98 55 chr9 72363404 72363419 -69908025 + MER58B DNA MER1_type 295 341 0 295 247 47 12 chr9 72364085 72364170 -69907274 - MER5A DNA MER1_type 0 189 102 891 249 54 17 chr9 72364450 72364691 -69906753 + MIR SINE MIR 2 251 -11 512 251 128 57 chr9 72364908 72365056 -69906388 - MIR SINE MIR -3 259 90 2145 107 0 35 chr9 72365056 72365373 -69906071 + AluSx SINE Alu 1 306 -6 512 251 128 57 chr9 72365373 72365435 -69906009 - MIR SINE MIR -172 90 34 2382 200 37 10 chr9 72365479 72365965 -69905479 + MLT1D LTR MaLR 2 500 -5 699 210 81 54 chr9 72365970 72366133 -69905311 + MER20 DNA MER1_type 29 199 -20 4219 93 55 0 chr9 72366133 72366683 -69904761 + LTR19B LTR ERV1 1 580 0 699 210 81 54 chr9 72366683 72366705 -69904739 + MER20 DNA MER1_type 199 219 0 1050 174 0 0 chr9 72367722 72367889 -69903555 - Tigger3b DNA MER2_type -1 1240 1074 * 3122 100 38 96 chr9 72367888 72368364 -69903080 - Tigger3b DNA MER2_type -2261 767 265 2414 85 0 0 chr9 72368364 72368658 -69902786 + AluSc SINE Alu 1 294 -15 3122 100 38 96 chr9 72368658 72368785 -69902659 - Tigger3b DNA MER2_type -2763 265 227 2247 90 4 0 chr9 72368785 72369063 -69902381 - AluSc SINE Alu -30 279 1 3122 100 38 96 chr9 72369063 72369249 -69902195 - Tigger3b DNA MER2_type -2801 227 32 2039 98 0 4 chr9 72369274 72369540 -69901904 + AluSq SINE Alu 27 291 -22 329 303 0 0 chr9 72369547 72369636 -69901808 + L1MC4 LINE L1 6614 6702 -1340 2604 155 5 0 chr9 72369707 72370095 -69901349 + MLT1B LTR MaLR 1 390 0 253 272 9 70 chr9 72370232 72370346 -69901098 + L1ME4a LINE L1 5603 5709 -412 222 277 0 0 chr9 72370834 72370881 -69900563 + MIR SINE MIR 15 61 -201 1649 159 114 114 chr9 72370884 72371275 -69900169 - MLT1D LTR MaLR 0 505 112 2102 123 20 0 chr9 72371275 72371567 -69899877 + AluSx SINE Alu 1 298 -14 1649 159 114 114 chr9 72371567 72371621 -69899823 - MLT1D LTR MaLR -392 113 60 436 187 27 0 chr9 72371654 72371729 -69899715 - MLT1D LTR MaLR -428 77 1 381 264 91 8 chr9 72371758 72371879 -69899565 + MIR SINE MIR 116 246 -16 366 23 0 0 chr9 72371887 72371930 -69899514 + (TTA)n Simple_repeat Simple_repeat 2 44 0 2051 122 4 0 chr9 72371930 72372209 -69899235 - AluSx SINE Alu -32 280 1 347 242 83 50 chr9 72372259 72372379 -69899065 + L2 LINE L2 3186 3309 -4 331 256 117 60 chr9 72372382 72372698 -69898746 + L1ME4a LINE L1 5786 6119 -2 208 143 0 0 chr9 72372842 72372877 -69898567 + (TTG)n Simple_repeat Simple_repeat 3 37 0 205 360 10 10 chr9 72372909 72373009 -69898435 + MIR SINE MIR 163 262 0 291 28 0 0 chr9 72374075 72374111 -69897333 + (CA)n Simple_repeat Simple_repeat 1 36 0 523 270 73 13 chr9 72374868 72375077 -69896367 + MIR SINE MIR 36 260 -2 225 0 0 0 chr9 72375089 72375114 -69896330 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1667 86 148 4 chr9 72375116 72375360 -69896084 - AluSg SINE Alu -31 279 1 2270 168 8 3 chr9 72375422 72375785 -69895659 + MLT1A1 LTR MaLR 1 365 0 2063 118 3 14 chr9 72375991 72376313 -69895131 + AluSq SINE Alu 1 319 0 532 262 81 29 chr9 72376393 72376603 -69894841 - MIR SINE MIR -1 261 41 1957 119 7 40 chr9 72377043 72377346 -69894098 - AluSx SINE Alu -19 293 1 207 0 0 0 chr9 72377410 72377433 -69894011 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 317 203 0 14 chr9 72377433 72377502 -69893942 - L1ME4a LINE L1 -3 6118 6051 2195 104 3 0 chr9 72377651 72377938 -69893506 + AluSq SINE Alu 5 292 -21 2340 95 0 16 chr9 72378923 72379239 -69892205 - AluY SINE Alu 0 311 1 29 47 0 0 chr9 72380358 72380401 -69891043 + AT_rich Low_complexity Low_complexity 1 43 0 237 163 0 0 chr9 72380648 72380697 -69890747 + CT-rich Low_complexity Low_complexity 4 52 0 1324 193 97 11 chr9 72380702 72380971 -69890473 - AluJo SINE Alu -8 304 13 1790 114 53 0 chr9 72381175 72381437 -69890007 - AluSg SINE Alu -11 299 24 341 274 128 30 chr9 72381478 72381642 -69889802 + MIR SINE MIR 63 242 -20 959 129 86 0 chr9 72381740 72381880 -69889564 + AluSg SINE Alu 24 175 -135 464 305 24 7 chr9 72382541 72382731 -69888713 - MIR SINE MIR -54 154 15 1709 106 26 46 chr9 72382838 72382923 -69888521 + MER44D DNA MER2_type 44 129 -2362 1477 169 75 0 chr9 72382923 72383190 -69888254 - AluJo SINE Alu -20 292 6 1709 106 26 46 chr9 72383190 72383406 -69888038 + MER44D DNA MER2_type 129 609 0 527 186 41 1 chr9 72383797 72383906 -69887538 - L1ME3 LINE L1 -22 6140 6039 486 252 39 39 chr9 72384314 72384520 -69886924 + MLT1K LTR MaLR 366 571 -17 225 119 0 0 chr9 72384791 72384833 -69886611 + (TG)n Simple_repeat Simple_repeat 1 42 0 289 42 21 21 chr9 72384833 72384881 -69886563 + (GA)n Simple_repeat Simple_repeat 2 49 0 1682 99 9 0 chr9 72385668 72385890 -69885554 - AluSq SINE Alu -89 224 1 22 0 0 0 chr9 72385967 72385989 -69885455 + AT_rich Low_complexity Low_complexity 1 22 0 2068 116 0 10 chr9 72386581 72386875 -69884569 - AluSq SINE Alu -22 291 1 2289 106 3 0 chr9 72387057 72387360 -69884084 + AluSx SINE Alu 1 304 -8 23 33 0 0 chr9 72387682 72387712 -69883732 + AT_rich Low_complexity Low_complexity 1 30 0 2663 151 24 24 chr9 72387973 72388398 -69883046 - MSTB LTR MaLR -1 425 1 521 325 32 16 chr9 72389118 72389306 -69882138 + MIR SINE MIR 2 192 -70 1686 150 82 32 chr9 72389388 72389729 -69881715 - MLT1B LTR MaLR 0 390 33 598 123 0 0 chr9 72389732 72389813 -69881631 + 5S rRNA rRNA 6 86 -35 279 106 0 43 chr9 72389815 72389862 -69881582 - MLT1B LTR MaLR -345 45 1 400 244 205 26 chr9 72390582 72390666 -69880778 + MIR SINE MIR 15 83 -179 2025 126 4 0 chr9 72390666 72390943 -69880501 - AluSx SINE Alu -18 294 17 400 244 205 26 chr9 72390943 72391014 -69880430 + MIR SINE MIR 83 198 -64 2939 167 53 19 chr9 72391014 72391546 -69879898 + Tigger7 DNA MER2_type 1 550 -183 553 176 0 0 chr9 72391542 72391627 -69879817 + Tigger7 DNA MER2_type 2403 2487 0 * 549 332 75 13 chr9 72391679 72391905 -69879539 - MIR SINE MIR -15 247 8 1533 281 97 64 chr9 72393145 72393814 -69877630 + MER115 DNA AcHobo 1 691 -2 1799 148 16 32 chr9 72394098 72394409 -69877035 - AluJb SINE Alu -6 306 1 2287 81 0 36 chr9 72394960 72395269 -69876175 - AluSp SINE Alu -11 302 5 345 319 26 17 chr9 72395422 72395538 -69875906 + MIR SINE MIR 32 148 -114 879 221 0 0 chr9 72395624 72395787 -69875657 - FRAM SINE Alu -12 164 2 320 246 0 14 chr9 72396175 72396244 -69875200 + L2 LINE L2 3221 3288 -25 299 55 0 73 chr9 72397309 72397364 -69874080 + (TTA)n Simple_repeat Simple_repeat 1 51 0 908 169 0 0 chr9 72397422 72397552 -69873892 + FLAM_C SINE Alu 1 130 -3 2546 107 16 45 chr9 72397597 72397972 -69873472 + THE1B LTR MaLR 1 364 0 12615 96 2 7 chr9 72397972 72398469 -69872975 + THE1B-int LTR MaLR 1 499 -1081 2256 113 0 3 chr9 72398469 72398780 -69872664 + AluSg SINE Alu 1 310 0 12615 96 2 7 chr9 72398780 72399869 -69871575 + THE1B-int LTR MaLR 499 1580 0 2264 150 19 27 chr9 72399869 72400236 -69871208 + THE1B LTR MaLR 1 364 0 217 352 0 0 chr9 72400473 72400544 -69870900 + L2 LINE L2 2966 3036 -236 4316 134 9 29 chr9 72400783 72400925 -69870519 - L1PB4 LINE L1 0 6156 6013 2315 71 0 0 chr9 72400925 72401236 -69870208 + AluY SINE Alu 2 312 0 4316 134 9 29 chr9 72401236 72401793 -69869651 - L1PB4 LINE L1 -143 6013 5470 21 0 0 0 chr9 72401826 72401847 -69869597 + AT_rich Low_complexity Low_complexity 1 21 0 253 362 39 0 chr9 72401875 72402002 -69869442 - MIR SINE MIR -61 147 16 234 0 0 0 chr9 72402156 72402182 -69869262 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 5860 215 38 47 chr9 72402210 72402710 -69868734 + L1M4 LINE L1 3732 4235 -1911 246 62 0 0 chr9 72402710 72402742 -69868702 + (CA)n Simple_repeat Simple_repeat 1 32 0 5860 215 38 47 chr9 72402742 72402967 -69868477 + L1M4 LINE L1 4235 4460 -1686 241 158 0 0 chr9 72402967 72403005 -69868439 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 5860 215 38 47 chr9 72403005 72403677 -69867767 + L1M4 LINE L1 4460 5154 -992 1814 105 79 22 chr9 72403677 72403954 -69867490 - AluSq SINE Alu -20 293 1 5860 215 38 47 chr9 72403954 72404132 -69867312 + L1M4 LINE L1 5154 5332 -814 1780 155 22 0 chr9 72404516 72404787 -69866657 + AluJo SINE Alu 21 297 -15 914 161 6 12 chr9 72404787 72404955 -69866489 + L1M4 LINE L1 5323 5489 -685 433 178 0 14 chr9 72404955 72405028 -69866416 + AluS SINE Alu 7 78 -234 1880 211 195 7 chr9 72405692 72406148 -69865296 + MLT1F LTR MaLR 1 542 0 396 213 0 0 chr9 72406666 72406746 -69864698 - MER5A DNA MER1_type -104 85 6 687 328 101 21 chr9 72407015 72407393 -69864051 - L3 LINE CR1 -1 1576 1169 470 280 10 62 chr9 72407678 72407810 -69863634 + MER5A DNA MER1_type 4 124 -65 2319 65 7 0 chr9 72407810 72408102 -69863342 - AluY SINE Alu -17 294 1 470 280 10 62 chr9 72408102 72408162 -69863282 + MER5A DNA MER1_type 124 186 -3 271 259 0 0 chr9 72408276 72408334 -69863110 + GA-rich Low_complexity Low_complexity 3 60 0 1929 148 153 45 chr9 72408574 72408802 -69862642 + Charlie1b DNA MER1_type 1 203 -2558 2159 107 3 17 chr9 72408802 72409125 -69862319 + AluSx SINE Alu 1 312 0 1929 148 153 45 chr9 72409125 72409308 -69862136 + Charlie1b DNA MER1_type 203 472 -2289 2368 69 14 3 chr9 72409308 72409597 -69861847 - AluY SINE Alu -19 292 1 1929 148 153 45 chr9 72409597 72409656 -69861788 + Charlie1b DNA MER1_type 472 523 0 856 167 18 24 chr9 72409659 72409827 -69861617 - MER5B DNA MER1_type -9 169 3 322 207 26 121 chr9 72410678 72410744 -69860700 - MIR SINE MIR 0 262 210 2101 102 42 0 chr9 72410744 72411028 -69860416 + AluSc SINE Alu 3 298 -11 322 207 26 121 chr9 72411028 72411077 -69860367 - MIR SINE MIR -52 210 158 2165 239 11 4 chr9 72411090 72411550 -69859894 + MLT1F LTR MaLR 2 464 -78 607 245 65 35 chr9 72411556 72411756 -69859688 + LTR16C LTR ERVL 286 491 0 820 203 0 0 chr9 72411981 72412114 -69859330 - FLAM_A SINE Alu -1 141 9 487 257 18 9 chr9 72412654 72412767 -69858677 - MER81 DNA DNA 0 114 1 1668 219 45 54 chr9 72412875 72413409 -69858035 - LTR55 LTR ERV -19 529 1 186 43 0 0 chr9 72413427 72413450 -69857994 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1834 117 0 8 chr9 72415553 72415647 -69855797 + AluY SINE Alu 35 128 -183 441 0 0 0 chr9 72415647 72415696 -69855748 + (CA)n Simple_repeat Simple_repeat 2 50 0 1834 117 0 8 chr9 72415696 72415866 -69855578 + AluY SINE Alu 128 297 -14 269 250 0 76 chr9 72415900 72415992 -69855452 - MLT1F LTR MaLR -443 99 15 477 323 116 23 chr9 72416447 72416757 -69854687 + L3 LINE CR1 1234 1572 -5 452 235 0 35 chr9 72417753 72417868 -69853576 - L1MC4 LINE L1 -152 7890 7780 518 132 26 18 chr9 72417981 72418095 -69853349 + CT-rich Low_complexity Low_complexity 4 118 0 1946 106 34 0 chr9 72418095 72418359 -69853085 - AluSx SINE Alu -39 273 1 837 197 27 85 chr9 72418373 72418596 -69852848 + MER58B DNA MER1_type 132 341 0 364 203 14 0 chr9 72418598 72418672 -69852772 - L1MC4a LINE L1 -157 7651 7577 415 317 12 18 chr9 72418673 72418837 -69852607 + MIR SINE MIR 100 262 0 22 43 0 21 chr9 72418864 72418886 -69852558 + AT_rich Low_complexity Low_complexity 1 22 -24 1914 153 3 13 chr9 72418886 72419186 -69852258 + AluJo SINE Alu 1 297 -15 22 43 0 21 chr9 72419186 72419210 -69852234 + AT_rich Low_complexity Low_complexity 22 46 0 2187 96 24 0 chr9 72419359 72419650 -69851794 - AluSp SINE Alu -15 298 1 24 0 0 0 chr9 72419657 72419681 -69851763 + AT_rich Low_complexity Low_complexity 1 24 0 2075 144 0 0 chr9 72419685 72419976 -69851468 - AluSx SINE Alu -21 291 1 647 286 86 59 chr9 72419985 72420134 -69851310 - L1MC/D LINE L1 -553 5617 5473 4302 131 75 46 chr9 72420134 72420896 -69850548 + LTR1 LTR ERV1 1 784 -1 647 286 86 59 chr9 72420896 72421229 -69850215 - L1MC/D LINE L1 -697 5473 5276 2405 84 7 0 chr9 72421247 72421546 -69849898 + AluSg SINE Alu 1 301 -9 185 212 303 20 chr9 72421748 72421847 -69849597 + MIR SINE MIR 20 146 -116 550 241 84 30 chr9 72421857 72422114 -69849330 + LTR48 LTR ERV1 11 356 -409 1722 203 130 48 chr9 72422116 72422156 -69849288 + MER39 LTR ERV1 4 39 -668 2885 82 6 0 chr9 72422156 72422509 -69848935 + THE1A LTR MaLR 1 355 0 12529 84 14 0 chr9 72422509 72424067 -69847377 + THE1A-int LTR MaLR 1 1580 0 2788 80 17 3 chr9 72424067 72424416 -69847028 + THE1A LTR MaLR 1 354 -1 1722 203 130 48 chr9 72424416 72424905 -69846539 + MER39 LTR ERV1 38 707 0 361 260 59 99 chr9 72424936 72425104 -69846340 + LTR48 LTR ERV1 526 680 -107 1722 149 0 85 chr9 72425104 72425433 -69846011 + AluJb SINE Alu 1 301 -11 361 260 59 99 chr9 72425433 72425537 -69845907 + LTR48 LTR ERV1 680 787 0 226 200 86 43 chr9 72425546 72425616 -69845828 + MIR SINE MIR 157 229 -33 * 502 208 299 0 chr9 72425614 72425835 -69845609 + L2 LINE L2 2537 2823 -491 338 266 16 47 chr9 72426199 72426327 -69845117 - L1ME LINE L1 -302 5819 5696 2483 60 0 3 chr9 72426377 72426676 -69844768 - AluY SINE Alu -13 298 1 232 125 0 0 chr9 72427689 72427721 -69843723 + (GGA)n Simple_repeat Simple_repeat 3 34 0 800 167 11 11 chr9 72427721 72427901 -69843543 + GA-rich Low_complexity Low_complexity 1 180 0 1079 88 0 27 chr9 72427901 72428049 -69843395 - AluSc SINE Alu -7 302 159 274 279 128 0 chr9 72428404 72428490 -69842954 + MIR SINE MIR 55 151 -111 323 194 32 0 chr9 72428490 72428552 -69842892 - MER46C DNA MER2_type 0 338 275 432 58 0 58 chr9 72429042 72429111 -69842333 + L1PA10 LINE L1 6101 6165 -3 2434 84 0 0 chr9 72430243 72430539 -69840905 + AluSg SINE Alu 1 296 -14 1933 162 3 10 chr9 72431223 72431537 -69839907 - AluJb SINE Alu 0 312 1 1989 124 0 34 chr9 72431617 72431915 -69839529 - AluJb SINE Alu -13 299 12 653 184 0 0 chr9 72432486 72432584 -69838860 + AluJ/FLAM SINE Alu 2 99 -213 431 281 7 15 chr9 72432735 72432870 -69838574 + MER5A DNA MER1_type 28 161 -28 204 289 93 41 chr9 72432939 72433036 -69838408 + L2 LINE L2 2932 3033 -239 961 169 241 86 chr9 72434138 72434552 -69836892 + MER66A LTR ERV1 97 475 -3 962 28 0 0 chr9 72435598 72435705 -69835739 - L1PA3 LINE L1 0 6155 6049 2121 201 39 13 chr9 72435932 72436389 -69835055 - MER70B LTR ERVL -109 469 1 29 28 0 0 chr9 72436560 72436596 -69834848 + AT_rich Low_complexity Low_complexity 1 36 0 497 303 91 10 chr9 72436616 72436814 -69834630 - MIR SINE MIR -1 261 48 452 250 23 62 chr9 72436914 72437090 -69834354 - MER112 DNA MER1_type -84 176 8 27 62 0 0 chr9 72442421 72442469 -69828975 + AT_rich Low_complexity Low_complexity 1 48 0 982 57 253 6 chr9 72442490 72442517 -69828927 - MER107 DNA MER1_type 0 197 178 194 61 0 30 chr9 72442517 72442550 -69828894 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 982 57 253 6 chr9 72442550 72442680 -69828764 - MER107 DNA MER1_type -19 178 1 1218 181 78 84 chr9 72442809 72443118 -69828326 + MER39 LTR ERV1 89 575 -112 2239 110 0 0 chr9 72443118 72443408 -69828036 + AluSq SINE Alu 1 290 -23 1218 181 78 84 chr9 72443408 72443521 -69827923 + MER39 LTR ERV1 575 687 0 675 292 4 49 chr9 72443773 72444037 -69827407 + MIR SINE MIR 6 257 -5 2436 84 0 7 chr9 72445362 72445672 -69825772 - AluY SINE Alu -3 308 1 226 286 0 0 chr9 72546477 72546533 -69724911 + GA-rich Low_complexity Low_complexity 1 56 0 2109 137 0 0 chr9 72546757 72547050 -69724394 + AluSx SINE Alu 1 293 -19 932 71 0 0 chr9 72547054 72547167 -69724277 + AluSp SINE Alu 1 113 -200 354 254 51 51 chr9 72547646 72547784 -69723660 + LTR16C LTR ERVL 345 482 -9 292 305 94 16 chr9 72548043 72548096 -69723348 + L2 LINE L2 3176 3223 -90 228 35 0 0 chr9 72548096 72548125 -69723319 + (TTG)n Simple_repeat Simple_repeat 2 30 0 292 305 94 16 chr9 72548125 72548199 -69723245 + L2 LINE L2 3223 3313 0 456 216 0 0 chr9 72548617 72548765 -69722679 + (TG)n Simple_repeat Simple_repeat 2 149 0 234 184 0 0 chr9 72549484 72549522 -69721922 + L2 LINE L2 3214 3251 -21 242 290 224 9 chr9 72549659 72549766 -69721678 - L2 LINE L2 -4 3268 3139 651 189 256 5 chr9 72549817 72550008 -69721436 - MIR SINE MIR -15 247 9 234 241 0 76 chr9 72550638 72550717 -69720727 + MIR SINE MIR 111 183 -79 1305 179 7 70 chr9 72551481 72551754 -69719690 - AluJb SINE Alu -16 296 41 363 154 44 121 chr9 72551754 72551845 -69719599 - MIR SINE MIR -65 143 60 349 137 0 0 chr9 72552061 72552112 -69719332 - Alu SINE Alu -8 294 244 453 260 24 8 chr9 72552223 72552350 -69719094 + MIR SINE MIR 21 149 -113 337 267 47 0 chr9 72552496 72552582 -69718862 - L1MC4 LINE L1 -1339 6703 6614 2050 128 3 0 chr9 72552583 72552871 -69718573 - AluSx SINE Alu -23 289 1 275 307 15 66 chr9 72553148 72553285 -69718159 - L2 LINE L2 -21 3292 3163 507 187 113 20 chr9 72553436 72553586 -69717858 - L1MA10 LINE L1 -8 6326 6163 2812 213 57 8 chr9 72553601 72554851 -69716593 - L1ME1 LINE L1 -198 5968 4658 7927 126 23 19 chr9 72554853 72556094 -69715350 + HSMAR2 DNA Mariner 11 1256 -46 907 244 24 20 chr9 72556221 72556475 -69714969 - MER34 LTR ERV1 -277 265 11 2239 127 0 0 chr9 72556741 72557049 -69714395 - AluSx SINE Alu -4 308 1 265 262 85 35 chr9 72557340 72557481 -69713963 - MLT1K LTR MaLR -66 522 375 1390 123 5 0 chr9 72557557 72557752 -69713692 - AluSg/x SINE Alu -9 303 108 2566 75 0 0 chr9 72557752 72558058 -69713386 - AluSg SINE Alu -4 306 1 539 317 135 36 chr9 72558058 72558392 -69713052 - MLT1I LTR MaLR -42 367 1 219 146 0 0 chr9 72558423 72558464 -69712980 + (A)n Simple_repeat Simple_repeat 1 41 0 200 244 0 0 chr9 72558708 72558749 -69712695 + A-rich Low_complexity Low_complexity 1 41 0 2270 117 0 0 chr9 72560915 72561214 -69710230 - AluSx SINE Alu -13 299 1 1753 108 0 4 chr9 72561484 72561724 -69709720 + AluSq SINE Alu 75 313 0 240 337 0 0 chr9 72561983 72562069 -69709375 - L2 LINE L2 -559 2755 2670 42 57 0 0 chr9 72562570 72562640 -69708804 + AT_rich Low_complexity Low_complexity 1 70 0 899 188 55 22 chr9 72562666 72562847 -69708597 - MER5A DNA MER1_type -2 187 1 286 86 0 0 chr9 72562899 72562934 -69708510 - Tigger4(Zombi) DNA MER2_type 0 2731 2697 716 205 0 0 chr9 72562935 72563052 -69708392 + FLAM_C SINE Alu 1 117 -26 426 20 0 0 chr9 72563052 72563103 -69708341 + (CA)n Simple_repeat Simple_repeat 2 52 0 1258 211 23 50 chr9 72563107 72563244 -69708200 + AluJo SINE Alu 2 141 -171 2113 120 0 3 chr9 72563244 72563570 -69707874 + AluSx SINE Alu 1 325 0 1258 211 23 50 chr9 72563570 72563733 -69707711 + AluJo SINE Alu 141 296 -16 1382 105 0 0 chr9 72563739 72563929 -69707515 - Tigger4(Zombi) DNA MER2_type -19 2712 2523 709 173 31 0 chr9 72563920 72564047 -69707397 - Tigger4(Zombi) DNA MER2_type -2600 131 1 * 447 291 25 13 chr9 72564049 72564207 -69707237 - MIR SINE MIR -55 207 48 2364 114 0 0 chr9 72564249 72564557 -69706887 - AluSx SINE Alu -4 308 1 394 49 33 0 chr9 72565269 72565330 -69706114 + (CA)n Simple_repeat Simple_repeat 2 64 0 258 32 0 0 chr9 72565432 72565463 -69705981 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1763 137 38 0 chr9 72565467 72565730 -69705714 - AluSg SINE Alu -37 273 1 1621 104 5 5 chr9 72565736 72565956 -69705488 - AluSq SINE Alu 0 313 94 518 251 87 38 chr9 72566410 72566593 -69704851 + L2 LINE L2 3118 3309 -4 785 185 20 7 chr9 72567092 72567227 -69704217 - MLT1F LTR MaLR -2 565 429 997 214 107 62 chr9 72567227 72567459 -69703985 - MLT1B LTR MaLR -2 388 137 2134 133 0 0 chr9 72567459 72567759 -69703685 - AluSx SINE Alu -12 300 1 997 214 107 62 chr9 72567759 72567834 -69703610 - MLT1B LTR MaLR -253 137 67 765 181 13 13 chr9 72567826 72567975 -69703469 - MLT1B LTR MaLR -238 152 4 * 978 240 74 79 chr9 72567980 72568384 -69703060 - MLT1F LTR MaLR -135 407 6 737 270 20 15 chr9 72568638 72568834 -69702610 + MIR SINE MIR 7 203 -59 279 173 0 0 chr9 72568834 72568886 -69702558 + (TATG)n Simple_repeat Simple_repeat 2 53 0 258 32 0 0 chr9 72568886 72568917 -69702527 + (GA)n Simple_repeat Simple_repeat 2 32 0 215 313 16 16 chr9 72568977 72569041 -69702403 + L2 LINE L2 3203 3266 -6 2422 71 10 0 chr9 72569222 72569518 -69701926 + AluY SINE Alu 2 300 -11 907 129 8 0 chr9 72569548 72569680 -69701764 + AluJb SINE Alu 1 133 -179 306 200 163 0 chr9 72569940 72570020 -69701424 - MLT1K LTR MaLR -110 478 386 2186 113 14 0 chr9 72570310 72570603 -69700841 + AluSx SINE Alu 3 299 -13 608 192 0 16 chr9 72570925 72571115 -69700329 + CT-rich Low_complexity Low_complexity 1 186 0 2008 135 6 16 chr9 72571140 72571451 -69699993 + AluSx SINE Alu 1 308 -4 271 254 0 0 chr9 72571941 72572000 -69699444 + L2 LINE L2 3255 3313 0 1407 345 25 80 chr9 72572122 72572672 -69698772 - MLT2B1 LTR ERVL 0 520 1 703 221 21 37 chr9 72573814 72574004 -69697440 + LTR33 LTR ERVL 6 192 -329 1541 142 0 13 chr9 72574156 72574388 -69697056 - AluJb SINE Alu -83 229 1 947 267 5 9 chr9 72574399 72574609 -69696835 - MER58A DNA MER1_type -15 209 1 1392 147 33 0 chr9 72574644 72574855 -69696589 + MER20 DNA MER1_type 2 219 0 2204 89 27 0 chr9 72575047 72575340 -69696104 - AluSq SINE Alu -12 301 1 1870 146 7 4 chr9 72576613 72576894 -69694550 - AluSx SINE Alu -30 282 1 756 301 47 8 chr9 72577071 72577307 -69694137 - MIR SINE MIR -5 257 13 243 345 158 14 chr9 72577392 72577531 -69693913 + MIR3 SINE MIR 45 203 -5 1996 141 20 0 chr9 72577661 72577959 -69693485 - AluSx SINE Alu -5 307 4 248 366 21 21 chr9 72578066 72578208 -69693236 - MIR3 SINE MIR -4 204 63 210 254 37 20 chr9 72578319 72578384 -69693060 + MIR SINE MIR 34 102 -106 192 224 45 45 chr9 72578541 72578608 -69692836 + L3 LINE CR1 1351 1417 -160 2167 117 7 7 chr9 72579068 72579376 -69692068 - AluSx SINE Alu -4 308 1 24 0 0 0 chr9 72579533 72579557 -69691887 + AT_rich Low_complexity Low_complexity 1 24 0 622 270 84 0 chr9 72579566 72579803 -69691641 + L1MC4a LINE L1 5664 5920 -1888 434 18 18 0 chr9 72579817 72579872 -69691572 + (TG)n Simple_repeat Simple_repeat 1 56 0 356 273 92 67 chr9 72579902 72579937 -69691507 + L1MC4a LINE L1 6075 6108 -1700 2104 121 24 0 chr9 72579937 72580234 -69691210 - AluSq SINE Alu -6 307 4 356 273 92 67 chr9 72580234 72580480 -69690964 + L1MC4a LINE L1 6108 6363 -1445 946 256 15 59 chr9 72580709 72581132 -69690312 + L1MC5 LINE L1 6497 6920 -888 243 258 0 0 chr9 72581172 72581238 -69690206 + L1ME4a LINE L1 5693 5758 -363 370 262 110 0 chr9 72581392 72581537 -69689907 + L1ME4a LINE L1 5948 6108 -13 34 79 0 0 chr9 72581537 72581613 -69689831 + AT_rich Low_complexity Low_complexity 1 76 0 246 95 0 0 chr9 72581722 72581764 -69689680 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 2201 106 0 0 chr9 72581767 72582049 -69689395 - AluSc SINE Alu -27 282 1 1546 191 10 41 chr9 72582174 72582467 -69688977 - AluJb SINE Alu -28 284 1 368 268 54 24 chr9 72583677 72583882 -69687562 + L1ME LINE L1 5525 5735 -386 678 230 6 18 chr9 72583883 72584048 -69687396 + LTR41 LTR ERVL 2 164 -609 369 243 61 84 chr9 72584322 72584552 -69686892 + LTR41 LTR ERVL 556 795 0 2399 94 0 3 chr9 72584685 72584994 -69686450 + AluSx SINE Alu 1 308 -4 240 35 0 0 chr9 72585064 72585093 -69686351 + (T)n Simple_repeat Simple_repeat 1 29 0 1918 331 58 27 chr9 72585213 72586255 -69685189 - ERVL LTR ERVL -636 5128 4054 624 364 33 9 chr9 72586297 72586632 -69684812 - ERVL LTR ERVL -1778 3986 3644 693 215 108 26 chr9 72586930 72587125 -69684319 + MLT1G LTR MaLR 1 211 -379 1345 198 0 48 chr9 72587125 72587323 -69684121 - MER90 LTR ERV1 0 614 431 2631 59 0 0 chr9 72587323 72587630 -69683814 + AluY SINE Alu 1 307 -4 1345 198 0 48 chr9 72587630 72587699 -69683745 - MER90 LTR ERV1 -183 431 360 695 285 24 0 chr9 72587694 72587901 -69683543 - MER90 LTR ERV1 -361 214 3 * 500 263 199 27 chr9 72587901 72588215 -69683229 + MLT1G LTR MaLR 206 576 -14 685 282 70 76 chr9 72588226 72588726 -69682718 - L2 LINE L2 -1007 2307 1811 198 0 0 0 chr9 72588818 72588840 -69682604 + (CACAT)n Simple_repeat Simple_repeat 3 24 0 386 271 120 40 chr9 72590935 72591160 -69680284 - MIR SINE MIR 0 262 20 301 391 25 12 chr9 72591279 72591440 -69680004 - L2 LINE L2 -8 3264 3102 2318 109 0 0 chr9 72591779 72592081 -69679363 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 72592184 72592207 -69679237 + AT_rich Low_complexity Low_complexity 1 23 0 318 384 76 5 chr9 72592227 72592412 -69679032 + L1ME LINE L1 5479 5676 -445 354 186 20 59 chr9 72592665 72592767 -69678677 + L1ME4a LINE L1 5955 6052 -69 1818 141 12 50 chr9 72592773 72593093 -69678351 - AluSx SINE Alu -4 308 1 22 94 0 0 chr9 72593116 72593180 -69678264 + AT_rich Low_complexity Low_complexity 1 64 0 2475 137 35 28 chr9 72593902 72594325 -69677119 - MSTB LTR MaLR 0 426 1 402 331 62 56 chr9 72594372 72594898 -69676546 + HAL1b LINE L1 98 568 -780 444 250 239 11 chr9 72595397 72595577 -69675867 + MIR SINE MIR 10 230 -32 651 210 138 28 chr9 72595636 72595817 -69675627 - MER21B LTR ERV1 -25 838 638 1510 177 64 125 chr9 72595817 72596565 -69674879 - LTR8A LTR ERV1 0 727 1 1609 201 136 104 chr9 72596568 72596890 -69674554 - MER21B LTR ERV1 -226 637 327 2074 153 13 0 chr9 72596890 72597197 -69674247 + AluSx SINE Alu 1 311 -1 1609 201 136 104 chr9 72597197 72597491 -69673953 - MER21B LTR ERV1 -536 327 1 2054 117 0 36 chr9 72598332 72598640 -69672804 + AluSx SINE Alu 3 299 -13 726 209 35 83 chr9 72598700 72598930 -69672514 + MER20 DNA MER1_type 1 219 0 365 332 37 82 chr9 72600209 72600561 -69670883 + L2 LINE L2 2421 2756 -558 245 265 0 48 chr9 72600641 72600724 -69670720 - MIR SINE MIR -90 118 40 308 29 0 0 chr9 72601085 72601120 -69670324 - U2 snRNA snRNA -153 35 1 241 273 18 0 chr9 72601977 72602032 -69669412 + L2 LINE L2 3210 3265 -7 300 262 79 40 chr9 72602119 72602245 -69669199 - MER94 DNA DNA 0 134 4 2477 71 3 0 chr9 72602536 72602846 -69668598 - AluY SINE Alu 0 311 1 2023 157 3 0 chr9 72603002 72603308 -69668136 - AluSx SINE Alu -5 307 1 644 293 43 6 chr9 72603425 72603589 -69667855 - MER45A DNA AcHobo -7 171 2 2261 101 0 3 chr9 72603726 72604032 -69667412 - AluSg SINE Alu -5 305 1 412 315 68 30 chr9 72604726 72605137 -69666307 - L1ME LINE L1 -448 5722 5293 584 143 0 0 chr9 72605140 72605238 -69666206 - AluSg/x SINE Alu 0 309 212 310 263 38 61 chr9 72605239 72605381 -69666063 - L1M4 LINE L1 -770 5376 5241 2302 110 10 0 chr9 72605381 72605689 -69665755 + AluSx SINE Alu 1 311 -1 310 263 38 61 chr9 72605689 72605808 -69665636 - L1M4 LINE L1 -905 5241 5121 273 250 61 27 chr9 72608565 72608713 -69662731 - L1ME4a LINE L1 -2 6119 5967 199 176 0 0 chr9 72608877 72608911 -69662533 - L2 LINE L2 -21 3292 3259 2292 112 16 19 chr9 72609013 72609389 -69662055 - L1PA14 LINE L1 0 6161 5787 368 222 44 11 chr9 72609389 72609479 -69661965 + L1MC4 LINE L1 6611 6703 -1339 575 102 11 11 chr9 72609488 72609576 -69661868 - L1PA14 LINE L1 -287 5874 5787 357 116 0 35 chr9 72609578 72609664 -69661780 + (TA)n Simple_repeat Simple_repeat 2 84 0 307 328 16 16 chr9 72610136 72610261 -69661183 - L2 LINE L2 -769 2545 2421 225 0 0 0 chr9 72610262 72610287 -69661157 + (TTTTTA)n Simple_repeat Simple_repeat 1 25 0 2097 94 14 0 chr9 72610289 72610576 -69660868 - L1PB1 LINE L1 -7 6144 5854 1020 108 0 0 chr9 72610576 72610724 -69660720 - L1PB1 LINE L1 -646 5505 5358 316 333 58 42 chr9 72610812 72611052 -69660392 - L2 LINE L2 -1038 2276 2033 22 0 0 0 chr9 72611558 72611580 -69659864 + AT_rich Low_complexity Low_complexity 1 22 0 539 197 16 31 chr9 72611935 72612062 -69659382 + L1ME1 LINE L1 5747 5871 -295 303 260 130 14 chr9 72612117 72612134 -69659310 - L1MA10 LINE L1 -3 6331 6315 2797 213 65 54 chr9 72612134 72613485 -69657959 - L1ME1 LINE L1 -14 6221 4886 2204 117 19 24 chr9 72613485 72613861 -69657583 + THE1C LTR MaLR 1 374 -1 2797 213 65 54 chr9 72613861 72613974 -69657470 - L1ME1 LINE L1 -1349 4886 1298 1763 88 0 0 chr9 72614044 72614272 -69657172 + AluY SINE Alu 66 293 -18 2503 265 75 49 chr9 72614849 72615977 -69655467 - L1ME1 LINE L1 -5218 1178 22 220 359 86 8 chr9 72616373 72616607 -69654837 - L3b LINE CR1 -148 1435 1184 267 116 0 0 chr9 72616824 72616867 -69654577 + Alu SINE Alu 261 303 -5 196 245 20 0 chr9 72616892 72616941 -69654503 + MIR SINE MIR 102 151 -111 1805 158 4 0 chr9 72617871 72618149 -69653295 + AluSx SINE Alu 1 279 -33 1911 94 4 8 chr9 72619426 72619691 -69651753 + AluY SINE Alu 40 303 -8 2106 124 3 34 chr9 72620693 72621015 -69650429 - AluSx SINE Alu 0 312 1 234 171 0 0 chr9 72621423 72621458 -69649986 - Tigger3b DNA MER2_type 0 1241 1207 2430 137 123 106 chr9 72621458 72622173 -69649271 - LTR8A LTR ERV1 0 727 1 4395 138 52 6 chr9 72622173 72622853 -69648591 - Tigger3b DNA MER2_type -2204 824 102 4187 156 82 7 chr9 72622853 72623621 -69647823 + LTR1B LTR ERV1 1 826 0 4395 138 52 6 chr9 72623621 72623728 -69647716 - Tigger3b DNA MER2_type -2926 102 1 762 130 0 51 chr9 72624652 72624790 -69646654 + FLAM_C SINE Alu 1 131 -2 412 201 83 162 chr9 72625122 72625285 -69646159 - L2 LINE L2 0 3313 3172 1671 169 27 3 chr9 72625285 72625405 -69646039 + AluJb SINE Alu 1 117 -195 261 0 0 0 chr9 72625405 72625434 -69646010 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1671 169 27 3 chr9 72625434 72625609 -69645835 + AluJb SINE Alu 117 303 -9 412 201 83 162 chr9 72625609 72625674 -69645770 - L2 LINE L2 -141 3172 3103 389 332 136 42 chr9 72625742 72626103 -69645341 - HAL1 LINE L1 -2108 399 5 379 152 51 13 chr9 72626309 72626388 -69645056 - L1MCa LINE L1 -6303 123 42 394 248 74 46 chr9 72626694 72626896 -69644548 - MIR SINE MIR -54 208 3 204 315 0 43 chr9 72626934 72627026 -69644418 + MIR SINE MIR 73 160 -102 234 224 149 56 chr9 72627517 72627530 -69643914 - L1ME4a LINE L1 -15 6106 6096 2135 111 0 13 chr9 72627530 72627828 -69643616 + AluSx SINE Alu 1 294 -18 234 224 149 56 chr9 72627828 72628082 -69643362 - L1ME4a LINE L1 -25 6096 5814 3605 250 50 14 chr9 72628269 72629329 -69642115 + L1MEc LINE L1 35 1132 -5264 499 246 9 0 chr9 72629324 72629438 -69642006 + L1MEc LINE L1 1918 2032 -4364 * 1219 218 56 65 chr9 72629459 72629964 -69641480 - MER39 LTR ERV1 -2 705 10 403 256 12 19 chr9 72629972 72630132 -69641312 + L1MEc LINE L1 2056 2214 -4182 415 133 0 122 chr9 72630133 72630223 -69641221 - MER2 DNA MER2_type -266 79 1 590 231 3 30 chr9 72630902 72631102 -69640342 + L1M1 LINE L1 3527 3720 -3845 313 275 0 38 chr9 72631121 72631252 -69640192 + L1M1 LINE L1 3948 4073 -3492 448 110 207 0 chr9 72631252 72631334 -69640110 + AluJ/FLAM SINE Alu 1 99 -213 333 0 0 0 chr9 72631334 72631371 -69640073 + (CA)n Simple_repeat Simple_repeat 1 37 0 1973 246 31 38 chr9 72631394 72632492 -69638952 + L1M1 LINE L1 4075 5124 -2441 1472 227 25 37 chr9 72632512 72632948 -69638496 + L1M1 LINE L1 5782 6212 -1353 890 225 6 11 chr9 72633036 72633218 -69638226 + MER5A DNA MER1_type 9 189 0 208 222 0 0 chr9 72633594 72633630 -69637814 + (CA)n Simple_repeat Simple_repeat 1 36 0 411 301 91 64 chr9 72634930 72635149 -69636295 - MIR SINE MIR -16 246 22 201 133 0 0 chr9 72635461 72635491 -69635953 + (TC)n Simple_repeat Simple_repeat 1 30 0 315 0 0 0 chr9 72635638 72635673 -69635771 + (CA)n Simple_repeat Simple_repeat 2 36 0 1296 196 113 31 chr9 72635673 72636035 -69635409 - MLT2B1 LTR ERVL -67 397 1 204 339 0 0 chr9 72636058 72636120 -69635324 + L2 LINE L2 3246 3307 -6 319 267 73 79 chr9 72636626 72636791 -69634653 + MIR3 SINE MIR 3 166 -42 482 339 16 32 chr9 72636897 72637086 -69634358 + MIR SINE MIR 11 196 -66 1526 205 85 15 chr9 72637976 72638317 -69633127 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr9 72640380 72640409 -69631035 + AT_rich Low_complexity Low_complexity 1 29 0 2018 139 103 25 chr9 72641244 72641640 -69629804 - MSTA LTR MaLR 0 428 2 369 0 0 0 chr9 72642242 72642283 -69629161 + (TA)n Simple_repeat Simple_repeat 2 42 0 262 298 12 6 chr9 72642384 72642481 -69628963 + CT-rich Low_complexity Low_complexity 1 97 0 1621 269 116 17 chr9 72642736 72643367 -69628077 + L2 LINE L2 1801 2493 -821 2165 72 0 0 chr9 72643606 72643870 -69627574 - AluY SINE Alu -3 308 45 2227 113 0 0 chr9 72643871 72644172 -69627272 - AluSx SINE Alu -11 301 1 2624 137 45 11 chr9 72647453 72647898 -69623546 - MER39B LTR ERV1 0 653 194 3075 241 81 41 chr9 72647898 72650030 -69621414 - L1M4 LINE L1 -3448 2934 795 1468 301 84 48 chr9 72650188 72651055 -69620389 - L1M3d LINE L1 -5219 672 4 2039 154 0 3 chr9 72651347 72651645 -69619799 + AluSx SINE Alu 1 297 -15 1149 232 142 8 chr9 72651754 72652121 -69619323 - LTR37A LTR ERV1 -5 421 6 24 85 0 0 chr9 72653365 72653424 -69618020 + AT_rich Low_complexity Low_complexity 1 59 0 512 248 103 14 chr9 72653615 72653760 -69617684 + MER58C DNA MER1_type 58 215 0 999 228 176 15 chr9 72657025 72657629 -69613815 - LTR50 LTR ERVL -2 793 6 2311 102 0 0 chr9 72658188 72658491 -69612953 + AluSx SINE Alu 4 306 -6 2261 91 14 3 chr9 72658495 72658792 -69612652 + AluSq SINE Alu 14 313 0 346 183 9 35 chr9 72659224 72659339 -69612105 + (TA)n Simple_repeat Simple_repeat 2 113 0 209 237 0 17 chr9 72659366 72659425 -69612019 + (TA)n Simple_repeat Simple_repeat 2 59 0 267 315 47 63 chr9 72660139 72660266 -69611178 + MIR SINE MIR 22 146 -62 433 301 114 11 chr9 72660859 72661035 -69610409 + MIR SINE MIR 40 233 -29 252 137 39 0 chr9 72661538 72661589 -69609855 - L1MB3 LINE L1 0 6183 6131 434 299 114 43 chr9 72661607 72661644 -69609800 + MER102b DNA MER1_type 54 87 -1341 1761 176 0 3 chr9 72661644 72661939 -69609505 - AluJo SINE Alu -18 294 1 434 299 114 43 chr9 72661939 72662161 -69609283 + MER102b DNA MER1_type 87 339 -2 350 117 0 0 chr9 72664902 72664962 -69606482 - L1PB1 LINE L1 -1 6150 6091 * 8429 214 17 42 chr9 72664951 72665277 -69606167 - L1PB1 LINE L1 -12 6855 6523 2309 116 0 0 chr9 72665277 72665587 -69605857 - AluSx SINE Alu -2 310 1 8429 214 17 42 chr9 72665587 72669298 -69602146 - L1PB1 LINE L1 -344 6523 2922 6723 65 1 3 chr9 72669300 72670685 -69600759 - L1PA7 LINE L1 -1 6153 4752 4405 158 20 1 chr9 72670786 72671496 -69599948 - MER44D DNA MER2_type -10 595 1 435 312 28 0 chr9 72671496 72671637 -69599807 - MIR SINE MIR -2 260 116 2151 136 0 3 chr9 72675635 72675937 -69595507 - AluSx SINE Alu -11 301 1 1526 214 28 14 chr9 72676248 72676608 -69594836 - MLT1A1 LTR MaLR 0 365 1 314 202 218 64 chr9 72677458 72677646 -69593798 + MER106B DNA MER1_type 18 1057 -2 376 207 107 58 chr9 72677880 72678001 -69593443 - MIR SINE MIR -6 256 130 881 225 22 13 chr9 72678093 72678320 -69593124 - L1ME3A LINE L1 -214 5956 5728 46 19 0 0 chr9 72679245 72679298 -69592146 + AT_rich Low_complexity Low_complexity 1 53 0 215 79 26 0 chr9 72679847 72679885 -69591559 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2040 118 3 67 chr9 72680175 72680305 -69591139 + AluSx SINE Alu 3 140 -172 2820 13 0 0 chr9 72680305 72680616 -69590828 + AluYa5 SINE Alu 1 311 0 2040 118 3 67 chr9 72680616 72680816 -69590628 + AluSx SINE Alu 140 312 0 252 0 0 0 chr9 72680932 72680960 -69590484 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 32 67 0 0 chr9 72681023 72681083 -69590361 + AT_rich Low_complexity Low_complexity 1 60 0 250 291 169 38 chr9 72681377 72681590 -69589854 + L2 LINE L2 3068 3308 -5 375 345 9 0 chr9 72681778 72681888 -69589556 + MIR SINE MIR 42 152 -56 279 315 256 5 chr9 72682374 72682577 -69588867 - MIR SINE MIR -7 255 2 205 255 20 0 chr9 72683106 72683157 -69588287 + MIR3 SINE MIR 147 198 -10 237 246 42 152 chr9 72683499 72683690 -69587754 - L2 LINE L2 -19 3294 3125 2189 95 0 3 chr9 72684809 72685115 -69586329 - AluSg SINE Alu 0 305 1 506 267 195 15 chr9 72685391 72685586 -69585858 + MIR SINE MIR 33 262 0 236 262 143 32 chr9 72685627 72685753 -69585691 + MIR SINE MIR 123 262 0 201 129 0 0 chr9 72686790 72686821 -69584623 + (GGGTG)n Simple_repeat Simple_repeat 2 32 0 2174 123 7 0 chr9 72687047 72687348 -69584096 + AluSq SINE Alu 1 303 -10 511 317 74 44 chr9 72687844 72688240 -69583204 + L2 LINE L2 2648 3054 -218 247 202 0 60 chr9 72688299 72688383 -69583061 + (TCTCTG)n Simple_repeat Simple_repeat 2 80 0 243 0 0 0 chr9 72689668 72689695 -69581749 + (CA)n Simple_repeat Simple_repeat 2 28 0 182 36 0 36 chr9 72689700 72689728 -69581716 + (GGATG)n Simple_repeat Simple_repeat 1 27 0 198 0 0 0 chr9 72690507 72690529 -69580915 + (T)n Simple_repeat Simple_repeat 1 22 0 202 243 324 0 chr9 72691170 72691244 -69580200 + MER91A DNA MER1_type 18 115 -81 649 164 8 0 chr9 72692234 72692356 -69579088 + GA-rich Low_complexity Low_complexity 2 124 0 224 318 0 0 chr9 72693696 72693759 -69577685 + CT-rich Low_complexity Low_complexity 3 65 0 320 198 117 63 chr9 72694557 72694668 -69576776 + MIR SINE MIR 119 235 -27 2032 165 6 6 chr9 72694668 72695025 -69576419 - MER46B DNA MER2_type 0 236 5 349 250 74 39 chr9 72696170 72696384 -69575060 - LTR50 LTR ERVL -18 684 297 415 248 95 0 chr9 72696526 72696663 -69574781 - LTR50 LTR ERVL -645 150 1 295 372 38 28 chr9 72696667 72696847 -69574597 - MIR SINE MIR -56 206 23 22 0 0 0 chr9 72697409 72697431 -69574013 + AT_rich Low_complexity Low_complexity 1 22 0 184 250 238 0 chr9 72698770 72698850 -69572594 - MIR SINE MIR -21 241 143 853 325 33 19 chr9 72699171 72699531 -69571913 - LTR16B LTR ERVL -8 456 92 198 0 0 0 chr9 72700306 72700328 -69571116 + (T)n Simple_repeat Simple_repeat 1 22 0 271 326 134 64 chr9 72700498 72701171 -69570273 - L2 LINE L2 -1 3312 2592 205 394 115 0 chr9 72702008 72702112 -69569332 - L2 LINE L2 -53 3219 3104 251 336 59 59 chr9 72702611 72702849 -69568595 - L2 LINE L2 -198 3074 2837 274 207 207 33 chr9 72702954 72703075 -69568369 - L2 LINE L2 -905 2409 2268 356 228 123 97 chr9 72703156 72703356 -69568088 + MIR SINE MIR 2 210 -52 2536 67 0 0 chr9 72703356 72703655 -69567789 + AluY SINE Alu 1 299 -12 356 228 123 97 chr9 72703655 72703682 -69567762 + MIR SINE MIR 210 235 -27 197 152 0 0 chr9 72704737 72704770 -69566674 + MIR SINE MIR 225 257 -5 3627 42 2 0 chr9 72705261 72705694 -69565750 + L1PA7 LINE L1 5710 6143 -11 23 0 0 0 chr9 72705698 72705721 -69565723 + AT_rich Low_complexity Low_complexity 1 23 0 237 33 0 0 chr9 72705832 72705862 -69565582 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 702 262 60 0 chr9 72706299 72706467 -69564977 + MIR SINE MIR 2 179 -83 30556 110 12 64 chr9 72707290 72713057 -69558387 - L1P3 LINE L1 -698 5474 12 12390 131 186 3 chr9 72713067 72713201 -69558243 - L1PBa LINE L1 -3935 2928 2820 182 36 0 36 chr9 72713201 72713229 -69558215 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 12390 131 186 3 chr9 72713229 72715567 -69555877 - L1PBa LINE L1 -4043 2820 3 422 303 53 0 chr9 72715792 72715924 -69555520 + MIR SINE MIR 92 230 -32 384 302 87 0 chr9 72715933 72716059 -69555385 - MIR SINE MIR -74 188 52 25 0 0 0 chr9 72716661 72716686 -69554758 + AT_rich Low_complexity Low_complexity 1 25 0 442 175 0 0 chr9 72716811 72716891 -69554553 - MER45A DNA AcHobo 0 178 99 1336 202 120 46 chr9 72716907 72717433 -69554011 + MER34B LTR ERV1 6 560 -5 398 239 51 51 chr9 72717413 72717530 -69553914 - MER45A DNA AcHobo -61 117 1 * 607 306 100 9 chr9 72717907 72718136 -69553308 - MIR SINE MIR -10 252 3 196 373 82 0 chr9 72718413 72718523 -69552921 + L2 LINE L2 3153 3271 -1 548 117 0 0 chr9 72718635 72718712 -69552732 + MER63 DNA MER1_type 675 751 -85 272 254 0 56 chr9 72718720 72718791 -69552653 + MER63 DNA MER1_type 986 1052 -8 1619 203 63 24 chr9 72719996 72720375 -69551069 - MSTD LTR MaLR 0 396 3 234 0 0 0 chr9 72721173 72721199 -69550245 + (TA)n Simple_repeat Simple_repeat 1 26 0 2417 97 19 56 chr9 72721215 72721525 -69549919 - MLT2A1 LTR ERVL -45 399 106 2473 52 0 0 chr9 72721525 72721815 -69549629 - AluY SINE Alu -21 290 1 2417 97 19 56 chr9 72721815 72721918 -69549526 - MLT2A1 LTR ERVL -338 106 1 247 238 25 12 chr9 72722053 72722133 -69549311 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 2011 162 71 63 chr9 72723842 72724427 -69547017 - MER34B LTR ERV1 -20 565 10 1667 157 27 21 chr9 72725509 72725840 -69545604 - MER39 LTR ERV1 0 707 375 1641 181 24 6 chr9 72725956 72726288 -69545156 - MER39 LTR ERV1 -369 338 1 354 238 48 0 chr9 72726303 72726387 -69545057 - MER5B DNA MER1_type -8 170 83 2996 108 50 15 chr9 72726388 72726853 -69544591 - MER1A DNA MER1_type -1 528 48 262 328 68 85 chr9 72726984 72727338 -69544106 - L2 LINE L2 -1 3271 2924 188 368 39 32 chr9 72727546 72727701 -69543743 + L2 LINE L2 2881 3036 -236 21 36 0 0 chr9 72727876 72727904 -69543540 + AT_rich Low_complexity Low_complexity 1 28 0 2048 140 0 10 chr9 72728103 72728411 -69543033 + AluSx SINE Alu 1 305 -7 229 241 168 66 chr9 72728420 72728557 -69542887 - MIR SINE MIR -1 261 111 557 259 96 0 chr9 72728572 72728738 -69542706 + MIR SINE MIR 64 245 -17 423 276 19 0 chr9 72728761 72728866 -69542578 - MIR SINE MIR -106 156 50 201 132 0 0 chr9 72729017 72729055 -69542389 + (GA)n Simple_repeat Simple_repeat 1 38 0 4371 156 19 1 chr9 72729383 72730103 -69541341 - MER44D DNA MER2_type 0 605 1 432 312 28 0 chr9 72730103 72730244 -69541200 - MIR SINE MIR -2 260 116 34887 37 0 2 chr9 72734282 72739556 -69531888 + L1PA2 LINE L1 889 6154 -1 287 292 129 0 chr9 72739556 72739727 -69531717 + HAL1 LINE L1 1561 1753 -754 1821 138 4 0 chr9 72739946 72740207 -69531237 - AluSx SINE Alu -16 296 35 183 129 0 0 chr9 72740659 72740690 -69530754 + (TA)n Simple_repeat Simple_repeat 1 31 0 681 133 53 13 chr9 72740951 72741100 -69530344 - Charlie5 DNA MER1_type 0 2624 2470 2129 153 50 70 chr9 72741100 72741547 -69529897 + MER31A LTR ERV1 1 439 -46 1611 185 0 25 chr9 72741547 72741833 -69529611 - AluJo SINE Alu -33 279 1 2129 153 50 70 chr9 72741833 72741867 -69529577 + MER31A LTR ERV1 439 472 -13 2286 82 14 0 chr9 72741869 72742161 -69529283 - AluSq SINE Alu -17 296 1 240 127 0 36 chr9 72742175 72742230 -69529214 - Charlie5 DNA MER1_type -172 2440 2388 250 171 0 0 chr9 72742253 72742294 -69529150 - Charlie5 DNA MER1_type -2563 49 9 301 320 94 8 chr9 72742748 72742876 -69528568 + L3 LINE CR1 1068 1206 -371 256 322 70 28 chr9 72743243 72743386 -69528058 + MIR SINE MIR 37 185 -77 188 200 250 0 chr9 72744115 72744175 -69527269 + MIR SINE MIR 113 187 -75 21 0 0 0 chr9 72746766 72746787 -69524657 + AT_rich Low_complexity Low_complexity 1 21 0 397 171 67 48 chr9 72747202 72747307 -69524137 - MER20B DNA MER1_type 0 783 677 338 243 59 29 chr9 72747333 72747469 -69523975 + L1MCb LINE L1 19 158 -5887 1214 189 108 8 chr9 72748918 72749167 -69522277 - AluJo SINE Alu -22 290 17 958 229 124 88 chr9 72749756 72749870 -69521574 + MER20B DNA MER1_type 74 182 -601 1850 144 32 35 chr9 72749870 72750183 -69521261 + AluJo SINE Alu 1 312 0 958 229 124 88 chr9 72750183 72750467 -69520977 + MER20B DNA MER1_type 182 498 -285 1686 114 100 36 chr9 72750467 72750747 -69520697 + AluSx SINE Alu 1 298 -14 958 229 124 88 chr9 72750747 72750870 -69520574 + MER20B DNA MER1_type 498 615 -168 872 270 166 31 chr9 72751284 72751736 -69519708 - L1MCc LINE L1 -5078 1345 833 196 322 0 0 chr9 72754375 72754434 -69517010 + L2 LINE L2 3251 3309 -4 25 0 0 0 chr9 72754515 72754540 -69516904 + AT_rich Low_complexity Low_complexity 1 25 0 847 195 0 13 chr9 72755362 72755511 -69515933 - FRAM SINE Alu -17 159 13 363 173 12 37 chr9 72755514 72755615 -69515829 - L1MDa LINE L1 -3890 2650 2577 347 276 37 30 chr9 72755799 72755933 -69515511 - L1MDa LINE L1 -5935 595 461 780 279 46 48 chr9 72756261 72756634 -69514810 - L2 LINE L2 -9 3304 2933 989 191 91 22 chr9 72757598 72757829 -69513615 + L1MD2 LINE L1 5905 6151 -208 4198 97 166 68 chr9 72759202 72759954 -69511490 - LTR12 LTR ERV1 0 826 1 805 236 35 52 chr9 72760013 72760323 -69511121 - pTR5 LTR ERV1 -1391 1047 743 5954 201 18 6 chr9 72760432 72761862 -69509582 - L1PA12 LINE L1 -5608 1973 1 207 0 0 0 chr9 72761885 72761908 -69509536 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 273 296 80 16 chr9 72762041 72762166 -69509278 + MIR SINE MIR 130 262 0 272 355 116 37 chr9 72763100 72763368 -69508076 - L2 LINE L2 -1043 2271 1983 439 363 28 6 chr9 72764917 72765096 -69506348 + MIR3 SINE MIR 16 198 -10 226 100 0 0 chr9 72766943 72766983 -69504461 - LTR66 LTR ERVL -172 438 399 344 309 88 50 chr9 72767366 72767547 -69503897 - MIR SINE MIR -52 210 23 2410 74 7 0 chr9 72768144 72768453 -69502991 - AluY SINE Alu 0 311 1 3790 195 16 13 chr9 72768760 72769461 -69501983 + MER44D DNA MER2_type 30 604 -1 16442 213 27 25 chr9 72769503 72770174 -69501270 - L1PA15 LINE L1 0 6816 6148 212 0 36 0 chr9 72770174 72770202 -69501242 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 16442 213 27 25 chr9 72770202 72770373 -69501071 - L1PA15 LINE L1 -668 6148 5979 180 0 0 0 chr9 72770373 72770393 -69501051 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 16442 213 27 25 chr9 72770393 72770918 -69500526 - L1PA15 LINE L1 -837 5979 5457 2441 194 26 76 chr9 72770918 72771500 -69499944 + MLT2B3 LTR ERVL 1 553 -1 16442 213 27 25 chr9 72771500 72775654 -69495790 - L1PA15 LINE L1 -1359 5457 1286 1904 286 46 30 chr9 72775668 72776276 -69495168 - L1PA15 LINE L1 -6033 754 137 450 333 35 63 chr9 72777394 72777679 -69493765 - L2 LINE L2 0 3272 2996 277 339 60 36 chr9 72777914 72778082 -69493362 - MIR3 SINE MIR -35 173 2 377 303 45 39 chr9 72778561 72778716 -69492728 - MIR SINE MIR -71 137 17 227 318 0 0 chr9 72778781 72778847 -69492597 + Charlie4 DNA MER1_type 1888 1953 -8 226 222 0 0 chr9 72779862 72779907 -69491537 + L2 LINE L2 3266 3310 -3 1689 173 21 10 chr9 72780032 72780321 -69491123 - AluJo SINE Alu -20 292 1 526 212 35 0 chr9 72780335 72780448 -69490996 - MIR SINE MIR -59 203 87 442 357 21 30 chr9 72780569 72780804 -69490640 - MIR SINE MIR -6 256 24 211 158 53 0 chr9 72780906 72780944 -69490500 - MIR SINE MIR -109 153 114 2001 100 30 0 chr9 72781774 72782045 -69489399 - AluSx SINE Alu 0 312 34 906 190 6 6 chr9 72782134 72782292 -69489152 - MER5A DNA MER1_type -5 184 27 457 279 35 6 chr9 72782308 72782480 -69488964 + L1ME4a LINE L1 5797 5973 -148 390 273 47 8 chr9 72782613 72782741 -69488703 - L2 LINE L2 -352 2961 2829 443 274 16 0 chr9 72782754 72782878 -69488566 + MIR SINE MIR 110 235 -27 718 318 102 24 chr9 72783270 72783682 -69487762 + L2 LINE L2 2869 3312 -1 1731 66 48 4 chr9 72784466 72784693 -69486751 - L1PA8 LINE L1 -8 6164 5928 201 238 12 50 chr9 72784938 72785018 -69486426 + CT-rich Low_complexity Low_complexity 1 77 0 631 129 0 0 chr9 72785661 72785746 -69485698 + AluSc SINE Alu 217 301 -8 317 309 9 0 chr9 72786225 72786335 -69485109 + (TGAA)n Simple_repeat Simple_repeat 2 112 0 590 241 61 7 chr9 72786492 72786659 -69484785 + MIR SINE MIR 17 185 -62 357 236 326 0 chr9 72787225 72787369 -69484075 + MIR SINE MIR 70 260 -2 446 304 52 76 chr9 72787418 72787747 -69483697 + MLT1I LTR MaLR 63 383 -26 476 244 9 9 chr9 72787771 72787880 -69483564 - MIR SINE MIR -105 157 48 240 35 0 0 chr9 72787880 72787909 -69483535 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 1044 290 162 32 chr9 72787910 72788967 -69482477 - L2 LINE L2 -14 3299 2051 253 302 0 0 chr9 72789061 72789124 -69482320 + MER33 DNA MER1_type 44 106 -218 284 326 12 0 chr9 72789379 72789465 -69481979 + MIR SINE MIR 48 134 -128 22 0 0 0 chr9 72789465 72789487 -69481957 + AT_rich Low_complexity Low_complexity 1 22 0 2021 120 10 0 chr9 72789487 72789778 -69481666 - AluSx SINE Alu -18 294 1 589 188 34 0 chr9 72790963 72791080 -69480364 + MER45A DNA AcHobo 27 147 -31 269 261 15 0 chr9 72792488 72792553 -69478891 - MLT1I LTR MaLR -259 150 85 307 336 40 40 chr9 72792804 72792953 -69478491 + MIR SINE MIR 6 154 -108 349 326 159 8 chr9 72793326 72793458 -69477986 + L2 LINE L2 3116 3267 -5 281 231 201 17 chr9 72794139 72794307 -69477137 + MIR SINE MIR 44 248 -14 1132 216 5 0 chr9 72794982 72795190 -69476254 - MER3 DNA MER1_type 0 209 1 188 348 174 0 chr9 72795995 72796087 -69475357 - L2 LINE L2 -2944 370 263 180 224 310 0 chr9 72796313 72796371 -69475073 - MIR SINE MIR -111 151 76 219 275 121 11 chr9 72797729 72797820 -69473624 + MER5A DNA MER1_type 9 109 -80 326 246 91 27 chr9 72797976 72798086 -69473358 + MIR3 SINE MIR 92 208 0 2021 160 3 13 chr9 72798390 72798703 -69472741 - AluJb SINE Alu -2 310 1 1486 202 3 12 chr9 72798849 72799186 -69472258 - L1MB7 LINE L1 -213 5971 5638 336 272 37 37 chr9 72799288 72799450 -69471994 + MIR SINE MIR 48 209 -53 848 208 153 9 chr9 72799450 72799705 -69471739 + MLT1E LTR MaLR 10 396 -258 1183 229 33 78 chr9 72799750 72800082 -69471362 + MLT1E LTR MaLR 277 593 0 203 343 88 5 chr9 72800235 72800439 -69471005 + L2 LINE L2 1751 1971 -1343 213 39 0 0 chr9 72800551 72800577 -69470867 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 956 316 32 27 chr9 72800584 72801270 -69470174 - L2 LINE L2 -46 3267 2578 1053 286 3 55 chr9 72801274 72801655 -69469789 - LTR16A LTR ERVL -6 444 84 435 356 70 15 chr9 72801677 72802008 -69469436 - L2 LINE L2 -733 2581 2233 587 281 119 31 chr9 72802030 72802390 -69469054 - L2 LINE L2 -1212 2102 1711 7025 63 6 62 chr9 72802542 72803553 -69467891 + SVA Other Other 433 1386 0 664 237 13 19 chr9 72803759 72803915 -69467529 + MIR SINE MIR 97 251 -11 1432 240 41 43 chr9 72804408 72804871 -69466573 + MLT1C LTR MaLR 6 467 0 504 304 70 0 chr9 72806184 72806385 -69465059 - MIR SINE MIR -35 227 13 204 314 114 29 chr9 72806391 72806531 -69464913 + L3 LINE CR1 960 1111 -466 252 86 0 0 chr9 72806814 72806849 -69464595 + (T)n Simple_repeat Simple_repeat 1 35 0 268 300 14 14 chr9 72807866 72807936 -69463508 + MIR SINE MIR 92 161 -101 430 249 138 37 chr9 72808006 72808195 -69463249 - MIR SINE MIR -15 247 40 209 261 0 58 chr9 72808346 72808415 -69463029 + L2 LINE L2 3249 3313 0 1163 196 5 0 chr9 72808512 72808740 -69462704 + AluJb SINE Alu 84 312 0 28 71 0 0 chr9 72810087 72810143 -69461301 + AT_rich Low_complexity Low_complexity 1 56 0 401 348 48 9 chr9 72810207 72810417 -69461027 - MIR SINE MIR -44 218 1 1302 156 70 33 chr9 72810572 72810873 -69460571 - LTR36 LTR ERV1 -299 312 1 30 27 0 0 chr9 72811345 72811382 -69460062 + AT_rich Low_complexity Low_complexity 1 37 0 311 379 63 11 chr9 72812221 72812395 -69459049 + L1 LINE L1 2879 3061 -3085 347 312 52 19 chr9 72812551 72812571 -69458873 + L1 LINE L1 3546 3564 -2582 4258 60 2 0 chr9 72812571 72813133 -69458311 - L1PA8 LINE L1 -3 6169 5607 347 312 52 19 chr9 72813133 72813266 -69458178 + L1 LINE L1 3564 3704 -2442 197 246 16 49 chr9 72813698 72813759 -69457685 + L2 LINE L2 3170 3228 -85 207 146 0 0 chr9 72814527 72814568 -69456876 + (CA)n Simple_repeat Simple_repeat 1 41 0 325 310 78 52 chr9 72815157 72815425 -69456019 - L3 LINE CR1 -125 1452 1178 590 277 33 5 chr9 72815542 72815726 -69455718 - MIR SINE MIR -5 257 69 263 279 13 25 chr9 72815985 72816064 -69455380 + MIR SINE MIR 22 99 -163 390 259 21 134 chr9 72817023 72817351 -69454093 + MLT1H LTR MaLR 64 354 -195 181 259 56 28 chr9 72817537 72817645 -69453799 - L2 LINE L2 -1208 2106 1996 2969 157 36 7 chr9 72818160 72818708 -69452736 - L1MC1 LINE L1 -27 6306 5743 310 243 0 0 chr9 72818754 72818824 -69452620 + L2 LINE L2 3244 3313 0 330 360 68 34 chr9 72818978 72819272 -69452172 + L2 LINE L2 2436 2739 -575 250 246 43 0 chr9 72819354 72819423 -69452021 + MIR SINE MIR 189 260 -2 448 374 14 5 chr9 72819436 72819650 -69451794 + L3 LINE CR1 1204 1419 -158 452 281 59 7 chr9 72820169 72820304 -69451140 + MIR SINE MIR 25 166 -96 513 259 65 46 chr9 72820690 72820909 -69450535 - MIR SINE MIR -35 227 8 467 313 14 7 chr9 72821092 72821236 -69450208 + MIR SINE MIR 36 180 -82 333 283 200 11 chr9 72821267 72821447 -69449997 - L3 LINE CR1 -471 1106 893 187 288 68 0 chr9 72821938 72822011 -69449433 - MIR SINE MIR -67 195 118 257 150 0 0 chr9 72822671 72822711 -69448733 - MER117 DNA MER1_type -48 149 110 358 350 43 7 chr9 72823249 72823389 -69448055 - L2 LINE L2 -3 3269 3125 2068 153 3 0 chr9 72823402 72823703 -69447741 + AluSq SINE Alu 1 302 -11 388 307 50 35 chr9 72824190 72824392 -69447052 - L2 LINE L2 -220 3052 2848 283 252 107 10 chr9 72824626 72824729 -69446715 - L2 LINE L2 -462 2852 2740 1028 290 178 11 chr9 72824749 72825304 -69446140 - L2 LINE L2 -1117 2197 1550 535 350 38 25 chr9 72825632 72825946 -69445498 + L2 LINE L2 2660 2977 -337 193 227 120 13 chr9 72826323 72826398 -69445046 - MIR3 SINE MIR -10 198 116 366 224 152 24 chr9 72826571 72826696 -69444748 - MIR SINE MIR -120 142 2 379 294 63 7 chr9 72826981 72827124 -69444320 - MIR SINE MIR -79 183 33 302 264 14 0 chr9 72827257 72827329 -69444115 - L2 LINE L2 -3 3310 3238 219 319 14 0 chr9 72827942 72828014 -69443430 + MER5A DNA MER1_type 9 81 -108 789 234 159 0 chr9 72828943 72829157 -69442287 - MIR SINE MIR -10 252 5 304 254 0 0 chr9 72829324 72829391 -69442053 - L2 LINE L2 0 3313 3247 1162 119 8 12 chr9 72831758 72832010 -69439434 + (TCCA)n Simple_repeat Simple_repeat 1 251 0 428 341 59 45 chr9 72832021 72832308 -69439136 - L2 LINE L2 -17 3255 2965 1165 276 25 3 chr9 72832823 72833145 -69438299 - LTR16C LTR ERVL -11 480 152 277 306 108 32 chr9 72833831 72833988 -69437456 + MIR SINE MIR 34 202 -60 325 245 108 0 chr9 72834003 72834105 -69437339 - MER103 DNA DNA -1 165 53 1615 231 67 47 chr9 72835181 72835717 -69435727 - MLT1H LTR MaLR 0 549 3 254 294 34 25 chr9 72837886 72838005 -69433439 + L1MC5 LINE L1 7810 7929 -32 224 391 23 0 chr9 72839249 72839336 -69432108 + L2 LINE L2 3224 3312 -1 204 270 40 0 chr9 72840291 72840365 -69431079 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 233 276 40 0 chr9 72840468 72840544 -69430900 + MIR3 SINE MIR 112 190 -18 325 252 36 36 chr9 72840689 72840800 -69430644 - L2 LINE L2 -25 3247 3137 2020 135 19 16 chr9 72841354 72841665 -69429779 - AluSx SINE Alu 0 312 1 609 256 7 0 chr9 72841690 72841827 -69429617 - MIR SINE MIR -117 145 8 297 353 39 20 chr9 72841896 72842049 -69429395 - MIR SINE MIR -59 203 48 211 252 0 29 chr9 72843487 72843590 -69427854 + GA-rich Low_complexity Low_complexity 1 100 0 371 231 115 9 chr9 72843828 72843956 -69427488 - MIR SINE MIR -68 140 4 208 274 75 19 chr9 72844082 72844179 -69427265 + L2 LINE L2 3142 3247 -25 207 0 0 0 chr9 72844179 72844202 -69427242 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 294 296 0 20 chr9 72844224 72844322 -69427122 + MIR SINE MIR 48 143 -119 622 278 144 21 chr9 72844360 72844493 -69426951 - L2 LINE L2 -2 3311 3196 231 36 0 0 chr9 72844493 72844521 -69426923 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 622 278 144 21 chr9 72844521 72844721 -69426723 - L2 LINE L2 -117 3196 2937 218 313 107 32 chr9 72845114 72845350 -69426094 - L2 LINE L2 -257 3056 2606 265 354 0 0 chr9 72846464 72846560 -69424884 + (CA)n Simple_repeat Simple_repeat 1 96 0 1393 278 33 18 chr9 72847138 72847527 -69423917 + LTR16A LTR ERVL 52 446 -4 2433 146 3 3 chr9 72847727 72848091 -69423353 + THE1B LTR MaLR 1 364 0 2234 112 0 16 chr9 72848987 72849290 -69422154 - AluSx SINE Alu -14 298 1 1876 172 0 22 chr9 72849827 72850141 -69421303 - AluSx SINE Alu -1 311 5 1171 207 4 17 chr9 72850951 72851183 -69420261 + L1MD3 LINE L1 7433 7661 -334 40320 73 13 12 chr9 72852020 72857460 -69413984 + Harlequin LTR ERV1 1452 6895 -1 2036 176 68 34 chr9 72857480 72857924 -69413520 + LTR2B LTR ERV1 32 490 0 562 291 160 1 chr9 72857937 72858231 -69413213 - L2 LINE L2 -222 3091 2753 426 213 92 40 chr9 72858564 72858738 -69412706 - L1ME4a LINE L1 0 6121 5939 989 220 16 16 chr9 72859102 72859352 -69412092 + MER96B DNA MER1_type? 1 250 -167 327 292 0 31 chr9 72859354 72859450 -69411994 + MER5A DNA MER1_type 91 183 -6 1132 210 123 36 chr9 72859510 72859825 -69411619 + MLT1E LTR MaLR 283 592 -1 48 0 0 0 chr9 72859831 72859879 -69411565 + AT_rich Low_complexity Low_complexity 1 48 0 1095 211 11 22 chr9 72860019 72860289 -69411155 - L1MB8 LINE L1 -5 6173 5907 275 276 6 105 chr9 72861164 72861345 -69410099 + L2 LINE L2 2181 2343 -971 305 303 80 12 chr9 72861489 72861651 -69409793 + MIR SINE MIR 13 185 -77 2033 110 40 0 chr9 72861654 72861971 -69409473 - AluSx SINE Alu 0 328 1 2339 96 3 0 chr9 72861982 72862284 -69409160 - AluSq SINE Alu -10 303 1 321 306 83 29 chr9 72862631 72863122 -69408322 + L1MC5 LINE L1 7260 7777 -184 308 259 17 11 chr9 72864414 72864588 -69406856 + (TTCA)n Simple_repeat Simple_repeat 1 175 0 227 355 19 9 chr9 72864610 72864717 -69406727 + (CTCA)n Simple_repeat Simple_repeat 3 110 0 230 216 14 0 chr9 72864717 72864791 -69406653 + (TTCA)n Simple_repeat Simple_repeat 3 77 0 252 185 0 0 chr9 72864812 72864866 -69406578 + (CTCA)n Simple_repeat Simple_repeat 2 55 0 229 192 0 26 chr9 72865348 72865426 -69406018 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 194 186 157 88 chr9 72865428 72865530 -69405914 - MIR3 SINE MIR -97 111 3 231 36 0 0 chr9 72866719 72866747 -69404697 + (CA)n Simple_repeat Simple_repeat 1 28 0 1099 185 19 0 chr9 72866776 72866992 -69404452 + MIR SINE MIR 21 240 -22 222 37 0 0 chr9 72867107 72867134 -69404310 + (CA)n Simple_repeat Simple_repeat 1 27 0 261 221 0 0 chr9 72868761 72868829 -69402615 + CT-rich Low_complexity Low_complexity 4 71 0 1000 286 32 40 chr9 72868876 72869404 -69402040 - L1ME3A LINE L1 -219 5951 5428 207 209 47 0 chr9 72870578 72870621 -69400823 + L2 LINE L2 3228 3272 0 224 333 33 73 chr9 72871381 72871807 -69399637 - L2 LINE L2 -60 3212 2804 244 288 12 12 chr9 72871853 72871933 -69399511 - MIR SINE MIR -108 154 75 350 241 24 12 chr9 72872942 72873025 -69398419 - MIR3 SINE MIR -48 160 77 459 232 43 14 chr9 72873075 72873213 -69398231 - MER104 DNA Tc2 -35 145 4 337 208 144 32 chr9 72873718 72873843 -69397601 + MER96 DNA MER1_type? 37 175 0 239 226 0 0 chr9 72873940 72873993 -69397451 - MIR SINE MIR -111 151 99 202 231 0 31 chr9 72874347 72874412 -69397032 + GA-rich Low_complexity Low_complexity 2 64 0 187 343 37 19 chr9 72874464 72874572 -69396872 + L3 LINE CR1 393 502 -1075 369 286 50 14 chr9 72874975 72875115 -69396329 + MIR SINE MIR 6 150 -112 186 323 0 0 chr9 72875198 72875260 -69396184 + MIR SINE MIR 188 249 -13 2131 104 0 0 chr9 72876452 72876722 -69394722 - AluSx SINE Alu -42 270 1 858 269 135 30 chr9 72877395 72877833 -69393611 - LTR16B LTR ERVL 0 464 10 937 257 104 32 chr9 72878305 72878484 -69392960 - L2 LINE L2 0 3313 3148 3339 151 46 20 chr9 72878484 72879072 -69392372 + LTR26 LTR ERV1 1 603 0 937 257 104 32 chr9 72879072 72879304 -69392140 - L2 LINE L2 -165 3148 2872 22 0 0 0 chr9 72879438 72879460 -69391984 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr9 72879688 72879714 -69391730 + AT_rich Low_complexity Low_complexity 1 26 0 2494 128 43 31 chr9 72879770 72879866 -69391578 + MSTC LTR MaLR 1 94 -334 2039 119 3 51 chr9 72879866 72880178 -69391266 + AluSq SINE Alu 3 299 -14 2494 128 43 31 chr9 72880178 72880502 -69390942 + MSTC LTR MaLR 94 426 -2 2309 93 3 31 chr9 72880975 72881296 -69390148 + AluSq SINE Alu 1 312 -1 394 159 0 0 chr9 72881420 72881483 -69389961 - MLT1C LTR MaLR 0 467 405 182 36 0 36 chr9 72881539 72881567 -69389877 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2231 116 55 3 chr9 72881722 72882068 -69389376 - MER39B LTR ERV1 0 653 290 834 138 0 88 chr9 72882068 72882112 -69389332 + LTR8 LTR ERV1 1 47 -644 3214 98 145 42 chr9 72882112 72882353 -69389091 - LTR10E LTR ERV1 0 633 418 3010 3 0 0 chr9 72882353 72882669 -69388775 - AluYb8 SINE Alu -2 316 1 3214 98 145 42 chr9 72882669 72883001 -69388443 - LTR10E LTR ERV1 -215 418 1 834 138 0 88 chr9 72883001 72883115 -69388329 + LTR8 LTR ERV1 47 145 -546 1975 141 45 87 chr9 72883124 72883571 -69387873 + LTR8 LTR ERV1 264 691 0 330 114 0 0 chr9 72883571 72883614 -69387830 - MER39B LTR ERV1 -360 293 251 1208 129 0 0 chr9 72883620 72883783 -69387661 - AluSc SINE Alu -14 295 133 411 197 0 0 chr9 72883783 72883854 -69387590 - MER39B LTR ERV1 -398 255 185 247 83 0 83 chr9 72884021 72884069 -69387375 + MIR SINE MIR 23 66 -142 2251 251 70 54 chr9 72884773 72885261 -69386183 + L2 LINE L2 2179 2658 -655 1980 162 3 0 chr9 72885261 72885558 -69385886 - AluJb SINE Alu -14 298 1 2251 251 70 54 chr9 72885558 72885573 -69385871 + L2 LINE L2 2658 2671 -642 2006 119 3 33 chr9 72885573 72885876 -69385568 - AluSx SINE Alu -16 296 3 2251 251 70 54 chr9 72885876 72886465 -69384979 + L2 LINE L2 2671 3304 -9 236 257 218 20 chr9 72886821 72886922 -69384522 - L2 LINE L2 -15 3257 3137 1862 178 0 13 chr9 72887201 72887515 -69383929 - AluJo SINE Alu -2 310 1 2261 107 10 0 chr9 72887611 72887920 -69383524 - AluSq SINE Alu -1 312 1 261 0 0 0 chr9 72888462 72888491 -69382953 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 381 319 42 88 chr9 72888744 72889129 -69382315 + L2 LINE L2 2871 3237 -35 225 253 263 0 chr9 72889299 72889394 -69382050 + MIR SINE MIR 49 168 -94 275 136 0 0 chr9 72891299 72891343 -69380101 - MER53 DNA DNA -139 50 7 327 299 43 8 chr9 72891462 72891579 -69379865 - L3 LINE CR1 -202 1375 1255 481 239 80 0 chr9 72891661 72891799 -69379645 + MER63A DNA MER1_type 59 207 -3 261 0 0 0 chr9 72892041 72892070 -69379374 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2351 51 14 0 chr9 72892070 72892345 -69379099 - AluY SINE Alu -32 279 1 741 167 0 16 chr9 72893341 72893467 -69377977 - FLAM_C SINE Alu -18 125 2 1862 149 3 3 chr9 72893496 72893824 -69377620 - AluJb SINE Alu 0 328 1 200 254 14 28 chr9 72895229 72895300 -69376144 + CT-rich Low_complexity Low_complexity 3 72 0 2261 92 0 4 chr9 72895759 72896106 -69375338 + AluSc SINE Alu 1 346 0 725 287 90 54 chr9 72896635 72897343 -69374101 + L1MC4a LINE L1 3451 4184 -1962 415 291 127 41 chr9 72897428 72898018 -69373426 + L1MC4a LINE L1 4497 5137 -1009 3570 180 94 46 chr9 72898090 72898118 -69373326 + MER21B LTR ERV1 1 26 -837 2414 80 3 3 chr9 72898118 72898417 -69373027 - AluSq SINE Alu -14 299 1 3570 180 94 46 chr9 72898417 72899209 -69372235 + MER21B LTR ERV1 26 860 -3 1744 95 0 0 chr9 72899337 72899578 -69371866 + L1PA13 LINE L1 5922 6162 -1 272 261 0 0 chr9 72899663 72899728 -69371716 - L1 LINE L1 -2022 4124 4060 1060 256 92 68 chr9 72899742 72900305 -69371139 + L1MC4a LINE L1 5438 6014 -1794 324 0 0 0 chr9 72901350 72901386 -69370058 + (CA)n Simple_repeat Simple_repeat 2 37 0 188 241 190 13 chr9 72901745 72901824 -69369620 + L2 LINE L2 2877 2969 -344 585 256 168 74 chr9 72901954 72902186 -69369258 + L2 LINE L2 2493 2702 -611 2446 63 0 0 chr9 72902186 72902471 -69368973 - AluY SINE Alu -26 285 1 585 256 168 74 chr9 72902471 72903003 -69368441 + L2 LINE L2 2702 3301 -12 342 239 144 45 chr9 72903464 72903654 -69367790 - MIR SINE MIR -52 210 3 217 233 0 0 chr9 72904192 72904235 -69367209 + CT-rich Low_complexity Low_complexity 2 44 0 2455 102 0 0 chr9 72904349 72904662 -69366782 - AluSq SINE Alu 0 313 1 658 188 53 41 chr9 72905263 72905433 -69366011 - MER5B DNA MER1_type -3 175 4 294 321 38 54 chr9 72905456 72905640 -69365804 + MIR SINE MIR 31 211 -51 204 97 0 0 chr9 72905807 72905838 -69365606 + (TC)n Simple_repeat Simple_repeat 2 32 0 629 203 8 0 chr9 72906941 72907074 -69364370 - AluSq/x SINE Alu -179 134 1 647 230 73 0 chr9 72907291 72907456 -69363988 - MER5B DNA MER1_type 0 178 2 1963 91 94 0 chr9 72907665 72907930 -69363514 - AluSx SINE Alu -18 294 5 2274 112 0 0 chr9 72907942 72908236 -69363208 - AluSg SINE Alu -15 295 2 1136 148 84 5 chr9 72909205 72909407 -69362037 - MER20 DNA MER1_type -1 218 1 646 270 75 18 chr9 72909497 72909723 -69361721 - MIR SINE MIR -10 252 14 459 138 50 0 chr9 72909944 72910024 -69361420 + LTR24 LTR ERV1 383 466 -1 218 216 39 0 chr9 72910171 72910222 -69361222 - MER5B DNA MER1_type -3 175 123 1258 182 21 25 chr9 72910222 72910464 -69360980 + AluJb SINE Alu 1 241 -71 2234 148 48 16 chr9 72910465 72910964 -69360480 - MER41B LTR ERV1 -40 595 1 343 211 0 0 chr9 72910964 72911027 -69360417 + AluJb SINE Alu 238 300 -2 401 237 21 0 chr9 72911066 72911163 -69360281 - MER5B DNA MER1_type -79 99 1 270 279 0 0 chr9 72911164 72911232 -69360212 - MIR SINE MIR -25 237 170 1378 215 39 10 chr9 72911233 72911545 -69359899 + MER65C LTR ERV1 3 323 -138 3388 156 43 52 chr9 72911545 72912384 -69359060 + LTR1 LTR ERV1 1 785 0 865 139 32 13 chr9 72912384 72912526 -69358918 + MER65C LTR ERV1 317 461 0 427 186 0 12 chr9 72912532 72912618 -69358826 - MIR SINE MIR -94 168 84 5048 134 10 24 chr9 72912623 72913416 -69358028 + LTR39 LTR ERV1 2 783 0 653 341 51 10 chr9 72913431 72913842 -69357602 - L2 LINE L2 -1157 2157 1730 1097 184 129 68 chr9 72913906 72914184 -69357260 + AluJo SINE Alu 5 299 -3 336 91 0 36 chr9 72914185 72914240 -69357204 + LTR23 LTR ERV1 135 187 -250 686 272 89 68 chr9 72914358 72914842 -69356602 - MLT1H LTR MaLR -7 542 7 568 282 58 16 chr9 72914861 72915188 -69356256 + L2 LINE L2 2687 3031 -241 247 220 0 0 chr9 72915205 72915255 -69356189 - L2 LINE L2 0 3272 3223 525 240 70 12 chr9 72915482 72915653 -69355791 + MIR SINE MIR 68 248 -14 223 321 132 9 chr9 72915726 72915832 -69355612 + L2 LINE L2 3150 3268 -4 273 174 0 0 chr9 72916092 72916138 -69355306 - MIR SINE MIR -1 261 216 949 171 12 0 chr9 72916145 72916309 -69355135 - FRAM SINE Alu 0 166 1 329 190 174 16 chr9 72916493 72916614 -69354830 - MIR SINE MIR 0 262 123 2304 101 3 0 chr9 72917048 72917354 -69354090 - AluY SINE Alu -4 307 1 1915 116 40 14 chr9 72919573 72919850 -69351594 + AluSq SINE Alu 1 284 -29 454 310 6 18 chr9 72920885 72921056 -69350388 - MIR SINE MIR -5 257 89 423 297 103 6 chr9 72922132 72922297 -69349147 + MIR SINE MIR 70 250 -12 248 277 45 45 chr9 72922568 72922680 -69348764 - MIR SINE MIR -61 147 36 461 257 73 12 chr9 72923751 72923944 -69347500 - MIR SINE MIR -3 259 20 891 166 25 0 chr9 72924307 72924464 -69346980 - FRAM SINE Alu -5 161 1 1040 247 60 0 chr9 72924746 72925029 -69346415 + LTR16A LTR ERVL 90 389 -61 807 201 56 0 chr9 72925205 72925384 -69346060 - MER5A DNA MER1_type 0 189 1 939 247 31 9 chr9 72925433 72925656 -69345788 + MIR SINE MIR 30 257 -5 243 220 483 0 chr9 72926557 72926675 -69344769 - MER5A DNA MER1_type -6 183 9 2764 146 20 26 chr9 72928825 72929283 -69342161 - LTR32 LTR ERVL 0 471 17 425 324 7 7 chr9 72929952 72930088 -69341356 - MER5A DNA MER1_type 0 189 54 217 338 15 15 chr9 72929975 72930111 -69341333 + MER5A DNA MER1_type 35 170 -19 * 1413 117 10 0 chr9 72930137 72930343 -69341101 - L1P4 LINE L1 -558 5608 5401 950 146 12 0 chr9 72930328 72930492 -69340952 + L1P4 LINE L1 5579 5744 -422 * 8146 173 39 74 chr9 72930492 72931182 -69340262 - MER52A LTR ERV1 0 1755 1042 1838 228 34 85 chr9 72931182 72931827 -69339617 - LTR9 LTR ERV1 0 612 1 8146 173 39 74 chr9 72931827 72932955 -69338489 - MER52A LTR ERV1 -713 1042 1 2243 102 10 6 chr9 72932955 72933269 -69338175 + L1PA16 LINE L1 5741 6055 -111 21 0 0 0 chr9 72934120 72934141 -69337303 + AT_rich Low_complexity Low_complexity 1 21 0 237 231 46 0 chr9 72935136 72935201 -69336243 + L1MC/D LINE L1 5857 5924 -1884 206 95 24 0 chr9 72935239 72935281 -69336163 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1507 186 0 25 chr9 72935284 72935569 -69335875 - AluJo SINE Alu -30 282 5 22 0 0 0 chr9 72935605 72935627 -69335817 + AT_rich Low_complexity Low_complexity 1 22 0 239 203 31 23 chr9 72936111 72936239 -69335205 + (TA)n Simple_repeat Simple_repeat 1 129 0 24 32 0 0 chr9 72936852 72936883 -69334561 + AT_rich Low_complexity Low_complexity 1 31 0 2144 143 132 8 chr9 72936917 72937295 -69334149 + MSTA LTR MaLR 1 425 -3 873 199 21 93 chr9 72937788 72937907 -69333537 + Charlie1 DNA MER1_type 1 70 -2691 1978 139 0 0 chr9 72937907 72938217 -69333227 + AluSg SINE Alu 1 310 0 873 199 21 93 chr9 72938217 72938371 -69333073 + Charlie1 DNA MER1_type 70 234 -2527 378 338 25 32 chr9 72939553 72939710 -69331734 + L3 LINE CR1 398 553 -1024 491 345 94 32 chr9 72939717 72940001 -69331443 - L2 LINE L2 0 3272 2950 2344 114 0 0 chr9 72940001 72940308 -69331136 + AluSg SINE Alu 1 307 -3 491 345 94 32 chr9 72940308 72940461 -69330983 - L2 LINE L2 -322 2950 2808 212 356 0 9 chr9 72940546 72940661 -69330783 + L3 LINE CR1 608 721 -856 492 306 25 29 chr9 72940883 72941128 -69330316 + L3 LINE CR1 797 1040 -537 534 188 60 0 chr9 72941295 72941412 -69330032 - MIR SINE MIR 0 262 139 1140 114 60 0 chr9 72941513 72941680 -69329764 - MSTC LTR MaLR -251 177 1 396 236 38 127 chr9 72942264 72942501 -69328943 + MIR SINE MIR 47 262 0 763 199 0 14 chr9 72943068 72943209 -69328235 - FLAM_C SINE Alu -3 140 2 605 222 0 0 chr9 72943242 72943359 -69328085 - FRAM SINE Alu -32 144 28 2340 97 0 3 chr9 72943455 72943753 -69327691 + AluSx SINE Alu 2 298 -14 281 247 53 87 chr9 72943964 72944114 -69327330 + L1MC5 LINE L1 7746 7890 -71 433 246 78 28 chr9 72944210 72944352 -69327092 - MER103 DNA DNA -17 149 1 667 223 14 0 chr9 72944637 72944776 -69326668 + MIR SINE MIR 12 152 -110 461 129 81 5 chr9 72944798 72944919 -69326525 + MER53 DNA DNA 2 188 -1 233 279 89 0 chr9 72944920 72944999 -69326445 + MIR SINE MIR 160 245 -17 676 215 44 0 chr9 72947592 72947750 -69323694 + L1MB7 LINE L1 4438 4602 -1544 1336 175 0 5 chr9 72947762 72947979 -69323465 - AluSg/x SINE Alu -12 298 83 3832 177 69 49 chr9 72947996 72948652 -69322792 + L1MB7 LINE L1 4623 5265 -919 2359 94 23 7 chr9 72948652 72948959 -69322485 + AluSx SINE Alu 1 312 0 3832 177 69 49 chr9 72948959 72949802 -69321642 + L1MB7 LINE L1 5265 6184 0 334 261 60 45 chr9 72950561 72950695 -69320749 - MIR SINE MIR -12 250 115 1268 84 6 0 chr9 72951427 72951594 -69319850 - AluY SINE Alu -11 300 133 2486 59 10 0 chr9 72951594 72951899 -69319545 - AluY SINE Alu -3 308 1 888 194 24 0 chr9 72952260 72952425 -69319019 + AluJo SINE Alu 6 174 -138 769 193 0 0 chr9 72952476 72952595 -69318849 + AluJo SINE Alu 178 296 -16 255 240 67 0 chr9 72952779 72952854 -69318590 - L1ME LINE L1 -266 5855 5776 399 223 184 0 chr9 72952854 72952957 -69318487 + MER5C DNA MER1_type 1 122 -202 2261 98 0 22 chr9 72953326 72953644 -69317800 + AluSx SINE Alu 1 311 -1 1134 160 95 9 chr9 72953791 72954022 -69317422 - L1MB7 LINE L1 0 6184 5934 919 193 40 0 chr9 72954026 72954202 -69317242 - L1MB7 LINE L1 -364 5814 5632 725 275 88 96 chr9 72954287 72954673 -69316771 + L2 LINE L2 2930 3312 -1 41 21 0 0 chr9 72955480 72955528 -69315916 + AT_rich Low_complexity Low_complexity 1 48 0 215 302 48 0 chr9 72956031 72956094 -69315350 + L2 LINE L2 3205 3270 -2 357 282 97 8 chr9 72956121 72956245 -69315199 + L3 LINE CR1 1425 1559 -18 558 237 160 0 chr9 72956311 72956467 -69314977 + MER5A DNA MER1_type 9 189 0 576 254 16 48 chr9 72956475 72956664 -69314780 - MER5A DNA MER1_type 0 189 7 1029 198 39 0 chr9 72956934 72957116 -69314328 - MER5A DNA MER1_type 0 189 1 2172 118 0 7 chr9 72957244 72957550 -69313894 + AluSx SINE Alu 1 304 -8 543 267 126 0 chr9 72957588 72957750 -69313694 + MER5A DNA MER1_type 4 189 0 741 202 51 56 chr9 72958034 72958212 -69313232 + MER5B DNA MER1_type 1 177 -1 2096 87 4 0 chr9 72958761 72959026 -69312418 - AluSq SINE Alu -7 306 41 319 245 43 79 chr9 72959417 72959556 -69311888 - MIR3 SINE MIR -45 163 30 1370 211 17 10 chr9 72962236 72962530 -69308914 + LTR16C LTR ERVL 194 489 -2 649 299 44 20 chr9 72963474 72963678 -69307766 + MIR SINE MIR 20 228 -34 354 161 0 0 chr9 72963677 72963733 -69307711 + MIR SINE MIR 76 131 -77 * 542 226 39 39 chr9 72963767 72963922 -69307522 + MIR SINE MIR 108 262 0 423 285 24 0 chr9 72964030 72964153 -69307291 - L2 LINE L2 -2 3311 3186 1308 101 0 0 chr9 72964212 72964380 -69307064 - AluSg/x SINE Alu -14 296 129 223 253 291 0 chr9 72965662 72965741 -69305703 + MIR SINE MIR 52 153 -109 29 47 0 0 chr9 72965813 72965856 -69305588 + AT_rich Low_complexity Low_complexity 1 43 0 364 279 8 60 chr9 72966496 72966660 -69304784 - MIR SINE MIR -55 153 4 1423 181 134 70 chr9 72967224 72967301 -69304143 - MLT1A1 LTR MaLR 0 365 294 1558 178 0 51 chr9 72967301 72967620 -69303824 + AluJb SINE Alu 5 308 0 1423 181 134 70 chr9 72967620 72967884 -69303560 - MLT1A1 LTR MaLR -71 294 1 725 303 39 4 chr9 72968310 72968541 -69302903 - MIR SINE MIR -12 250 12 25 75 0 0 chr9 72968729 72968782 -69302662 + AT_rich Low_complexity Low_complexity 1 53 0 2240 105 42 60 chr9 72971710 72972092 -69299352 - THE1C LTR MaLR 0 375 1 745 218 11 46 chr9 72972370 72972544 -69298900 + MER5A DNA MER1_type 22 189 0 756 274 31 47 chr9 72972558 72972813 -69298631 + MIR SINE MIR 12 262 0 186 318 0 0 chr9 72972915 72972978 -69298466 - L2 LINE L2 0 3313 3251 207 0 0 0 chr9 72973088 72973111 -69298333 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 761 250 0 6 chr9 72973478 72973638 -69297806 - L1PA13 LINE L1 -6628 159 1 263 314 131 39 chr9 72973740 72973893 -69297551 + L2 LINE L2 3106 3272 0 311 302 7 58 chr9 72975045 72975184 -69296260 + MIR SINE MIR 52 183 -79 286 301 166 0 chr9 72975285 72975448 -69295996 + MIR SINE MIR 73 262 0 2604 157 12 5 chr9 72975766 72976187 -69295257 + MSTB1 LTR MaLR 9 432 0 241 299 15 0 chr9 72976560 72976627 -69294817 + GA-rich Low_complexity Low_complexity 1 68 0 504 236 66 0 chr9 72976636 72976742 -69294702 + MER81 DNA DNA 2 114 0 956 174 137 34 chr9 72977313 72977591 -69293853 + MER33 DNA MER1_type 1 299 -25 241 194 16 16 chr9 72977605 72977667 -69293777 - MER91B DNA MER1_type -58 132 71 207 204 0 0 chr9 72977774 72977818 -69293626 + (TATAA)n Simple_repeat Simple_repeat 3 46 0 515 291 136 15 chr9 72977822 72978021 -69293423 - MIR SINE MIR -10 252 30 1871 193 111 51 chr9 72980767 72981234 -69290210 + MLT2B1 LTR ERVL 1 495 -25 1034 180 0 0 chr9 72981252 72981419 -69290025 + AluSg/x SINE Alu 133 299 -13 51 51 0 0 chr9 72981438 72981517 -69289927 + AT_rich Low_complexity Low_complexity 1 79 0 186 43 0 0 chr9 72981536 72981559 -69289885 + (TA)n Simple_repeat Simple_repeat 2 24 0 310 130 0 37 chr9 72981564 72981618 -69289826 + MLT2B1 LTR ERVL 464 515 -5 473 294 8 0 chr9 72983471 72983590 -69287854 - MIR3 SINE MIR -34 174 55 287 309 53 0 chr9 72983981 72984075 -69287369 + MIR SINE MIR 49 147 -115 613 296 58 42 chr9 72984637 72984948 -69286496 + L3 LINE CR1 759 1074 -503 324 336 14 20 chr9 72985180 72985326 -69286118 - MER117 DNA MER1_type 0 197 53 1235 236 88 58 chr9 72985558 72985990 -69285454 + MLT1J2 LTR MaLR 1 445 -5 478 269 50 28 chr9 72986014 72986196 -69285248 + MER5A DNA MER1_type 3 188 -1 484 290 95 18 chr9 72986809 72986978 -69284466 + MIR SINE MIR 22 203 -59 329 224 93 9 chr9 72987129 72987236 -69284208 + MIR SINE MIR 81 196 -66 180 152 0 0 chr9 72987254 72987287 -69284157 + (TG)n Simple_repeat Simple_repeat 2 34 0 508 216 108 22 chr9 72987329 72987468 -69283976 - MIR SINE MIR -1 261 111 306 322 25 0 chr9 72987859 72987980 -69283464 + L1ME LINE L1 5610 5733 -437 1997 137 163 39 chr9 72988259 72988482 -69282962 - MSTA LTR MaLR 0 428 234 2245 138 0 0 chr9 72988482 72988793 -69282651 - AluSx SINE Alu -1 311 1 1997 137 163 39 chr9 72988793 72988950 -69282494 - MSTA LTR MaLR -194 234 1 26 30 0 0 chr9 72988993 72989026 -69282418 + AT_rich Low_complexity Low_complexity 1 33 0 1997 143 3 0 chr9 72989071 72989379 -69282065 - AluSx SINE Alu -3 309 1 640 284 104 5 chr9 72989475 72989697 -69281747 - MIR SINE MIR -3 259 16 232 203 81 54 chr9 72989747 72989821 -69281623 - MIR SINE MIR -74 188 113 200 333 53 0 chr9 72990196 72990271 -69281173 + MIR3 SINE MIR 87 165 -43 2066 236 63 85 chr9 72990599 72991366 -69280078 + L1ME LINE L1 7 756 -5314 246 327 30 24 chr9 72991467 72991635 -69279809 + HAL1 LINE L1 849 1017 -1490 1001 186 0 0 chr9 72991642 72991809 -69279635 + FRAM SINE Alu 1 167 -9 305 285 111 35 chr9 72991862 72992006 -69279438 + L1ME LINE L1 912 1066 -5004 684 264 35 10 chr9 72992074 72992308 -69279136 + L1ME LINE L1 1036 1512 -929 5979 42 8 13 chr9 72992308 72993139 -69278305 + L1P LINE L1 1 955 -5191 41 0 0 0 chr9 72993256 72993297 -69278147 + AT_rich Low_complexity Low_complexity 1 41 0 186 43 0 0 chr9 72993302 72993325 -69278119 + (TTTAA)n Simple_repeat Simple_repeat 5 27 0 * 239 135 54 9 chr9 72993323 72993434 -69278010 + (TA)n Simple_repeat Simple_repeat 2 117 0 3915 71 2 0 chr9 72993439 72993916 -69277528 - L1PA8 LINE L1 -8 6164 5687 297 286 9 9 chr9 72994044 72994149 -69277295 - Charlie8 DNA MER1_type -1945 472 368 193 343 41 0 chr9 72994530 72994603 -69276841 + L2 LINE L2 2978 3053 -219 607 235 65 18 chr9 72994729 72994899 -69276545 - L2 LINE L2 0 3313 3136 941 238 120 79 chr9 72994971 72994991 -69276453 - MLT1I LTR MaLR -2 407 389 987 177 32 92 chr9 72994991 72995240 -69276204 - MER106A DNA MER1_type -1 235 2 941 238 120 79 chr9 72995240 72995610 -69275834 - MLT1I LTR MaLR -20 389 1 185 314 162 48 chr9 72995644 72995749 -69275695 - MIR3 SINE MIR -77 131 15 203 294 213 29 chr9 72996175 72996311 -69275133 - MIR3 SINE MIR -33 175 15 28 29 0 0 chr9 72998726 72998761 -69272683 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr9 72998867 72998895 -69272549 + AT_rich Low_complexity Low_complexity 1 28 0 2555 112 18 86 chr9 72998981 72999333 -69272111 + L1MA3 LINE L1 5732 6043 -262 1547 195 3 23 chr9 72999333 72999635 -69271809 + AluJo SINE Alu 1 296 -16 2555 112 18 86 chr9 72999635 72999773 -69271671 + L1MA3 LINE L1 6043 6189 -116 22 0 0 0 chr9 73000063 73000085 -69271359 + AT_rich Low_complexity Low_complexity 1 22 0 1956 145 3 0 chr9 73000357 73000639 -69270805 - AluJb SINE Alu -11 301 19 342 0 0 0 chr9 73001978 73002016 -69269428 + (TG)n Simple_repeat Simple_repeat 2 39 0 301 207 61 24 chr9 73002232 73002314 -69269130 - MLT1A2 LTR MaLR -288 86 2 600 244 181 9 chr9 73002659 73002824 -69268620 + MIR SINE MIR 4 218 -44 219 88 0 0 chr9 73002824 73002858 -69268586 + (CA)n Simple_repeat Simple_repeat 2 35 0 600 244 181 9 chr9 73002858 73002913 -69268531 + MIR SINE MIR 218 262 0 354 150 50 0 chr9 73004370 73004467 -69266977 - L1M4 LINE L1 -408 5766 5662 582 113 0 0 chr9 73004507 73004587 -69266857 - MADE1 DNA Mariner 0 80 1 394 290 73 50 chr9 73004613 73004872 -69266572 - LTR16C LTR ERVL -17 474 210 2340 103 0 31 chr9 73005101 73005421 -69266023 + AluSx SINE Alu 1 310 -2 246 330 62 11 chr9 73005421 73005597 -69265847 - L2 LINE L2 -239 3033 2849 413 265 61 7 chr9 73006015 73006162 -69265282 + MIR SINE MIR 61 215 -47 371 268 70 21 chr9 73007293 73007435 -69264009 - MLT1K LTR MaLR -4 584 436 194 254 0 0 chr9 73008278 73008333 -69263111 - L2 LINE L2 -1 3271 3217 271 189 95 14 chr9 73009277 73009351 -69262093 + L2 LINE L2 3234 3313 0 360 0 0 0 chr9 73010564 73010604 -69260840 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 77 0 0 chr9 73010605 73010631 -69260813 + (GA)n Simple_repeat Simple_repeat 1 26 0 410 255 215 5 chr9 73010937 73011137 -69260307 - MIR SINE MIR -12 250 9 272 351 0 0 chr9 73011668 73011745 -69259699 + MIR SINE MIR 12 88 -174 227 327 9 28 chr9 73011850 73011957 -69259487 + L2 LINE L2 3168 3272 0 4332 102 18 8 chr9 73012285 73012891 -69258553 + LTR9 LTR ERV1 1 612 0 2402 58 0 3 chr9 73014504 73014795 -69256649 - AluY SINE Alu 0 311 22 208 260 20 0 chr9 73014814 73014864 -69256580 - L2 LINE L2 -1 3312 3262 253 309 21 10 chr9 73016637 73016734 -69254710 - L2 LINE L2 -3 3269 3172 229 297 76 87 chr9 73016889 73017324 -69254120 - L2 LINE L2 -19 3253 2824 2423 88 0 0 chr9 73017329 73017623 -69253821 + AluSx SINE Alu 1 294 -18 564 212 175 69 chr9 73017667 73017884 -69253560 + MIR SINE MIR 4 243 -19 186 103 0 0 chr9 73018017 73018046 -69253398 - L2 LINE L2 -560 2754 2726 1295 201 111 10 chr9 73018111 73018399 -69253045 - MSTD LTR MaLR -10 386 70 426 299 14 14 chr9 73019097 73019241 -69252203 + MER5A DNA MER1_type 1 144 -45 809 130 16 0 chr9 73019773 73019896 -69251548 - FLAM_C SINE Alu -4 129 5 201 207 0 86 chr9 73020476 73020534 -69250910 - L2 LINE L2 -84 3229 3177 275 196 36 0 chr9 73020584 73020640 -69250804 + U2 snRNA snRNA 1 58 -130 726 155 35 0 chr9 73020766 73020882 -69250562 + FLAM_C SINE Alu 2 121 -22 189 0 0 0 chr9 73021689 73021710 -69249734 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr9 73022380 73022401 -69249043 + AT_rich Low_complexity Low_complexity 1 21 0 456 291 42 68 chr9 73022797 73023034 -69248410 + MIR SINE MIR 32 262 0 270 231 164 29 chr9 73023690 73023794 -69247650 + Charlie8 DNA MER1_type 306 423 -1994 272 263 85 59 chr9 73023980 73024098 -69247346 - MIR3 SINE MIR -52 156 36 431 118 12 0 chr9 73025372 73025457 -69245987 + (GA)n Simple_repeat Simple_repeat 1 86 0 342 0 0 0 chr9 73025464 73025502 -69245942 + (GAAAA)n Simple_repeat Simple_repeat 5 42 0 924 280 121 26 chr9 73026323 73026819 -69244625 - HAL1 LINE L1 -592 1915 1373 1406 123 57 14 chr9 73027949 73028215 -69243229 + THE1C LTR MaLR 1 350 -25 2308 107 0 16 chr9 73028931 73029240 -69242204 + AluSc SINE Alu 1 304 -5 2390 70 14 0 chr9 73030046 73030333 -69241111 + AluY SINE Alu 1 291 -20 207 0 0 0 chr9 73030977 73031000 -69240444 + (CAA)n Simple_repeat Simple_repeat 2 24 0 572 191 96 0 chr9 73031135 73031250 -69240194 - FLAM_A SINE Alu -7 126 1 692 215 103 60 chr9 73032191 73032415 -69239029 + MLT1H LTR MaLR 30 305 -244 186 103 0 0 chr9 73032427 73032456 -69238988 + (CAGCC)n Simple_repeat Simple_repeat 2 30 0 544 223 149 5 chr9 73032563 73032829 -69238615 + MER2 DNA MER2_type 7 345 0 207 343 0 0 chr9 73032850 73032923 -69238521 + (CA)n Simple_repeat Simple_repeat 1 73 0 374 284 199 0 chr9 73033573 73033714 -69237730 + MIR SINE MIR 24 192 -70 835 247 17 17 chr9 73034621 73034860 -69236584 + MIR SINE MIR 3 241 -21 235 247 26 13 chr9 73035611 73035688 -69235756 + MIR SINE MIR 40 117 -91 185 293 24 49 chr9 73035856 73035938 -69235506 - MER5A DNA MER1_type -106 83 4 2226 129 0 3 chr9 73035938 73036249 -69235195 + AluJb SINE Alu 3 312 0 339 232 54 120 chr9 73036627 73036903 -69234541 - L2 LINE L2 0 3272 3015 655 282 99 5 chr9 73036904 73037117 -69234327 + MIR SINE MIR 4 236 -26 275 208 0 28 chr9 73037129 73037201 -69234243 + (TA)n Simple_repeat Simple_repeat 2 71 0 188 250 0 0 chr9 73038058 73038098 -69233346 + L2 LINE L2 3210 3249 -23 786 223 47 33 chr9 73038353 73038568 -69232876 + MIR SINE MIR 17 234 -28 430 271 7 21 chr9 73038769 73038913 -69232531 + MIR SINE MIR 29 170 -92 469 266 0 8 chr9 73039889 73040017 -69231427 + L2 LINE L2 3187 3313 0 1862 73 0 0 chr9 73041327 73041573 -69229871 + Harlequin LTR ERV1 393 638 -6258 2095 178 68 32 chr9 73041573 73042016 -69229428 - LTR2B LTR ERV1 0 490 32 38436 74 18 17 chr9 73042034 73043645 -69227799 - Harlequin LTR ERV1 0 6896 5288 314 26 0 0 chr9 73043645 73043684 -69227760 - AluY SINE Alu -169 132 94 38436 74 18 17 chr9 73043684 73047124 -69224320 - Harlequin LTR ERV1 -1608 5288 1803 7309 74 128 13 chr9 73047104 73047241 -69224203 - HERVE LTR ERV1 -3668 4117 3997 * 198 0 0 0 chr9 73047241 73047263 -69224181 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 7309 74 128 13 chr9 73047263 73048215 -69223229 - HERVE LTR ERV1 -3788 3997 263 776 132 7 40 chr9 73048188 73048340 -69223104 - HERVE LTR ERV1 -7412 401 255 * 2646 121 2 25 chr9 73048324 73048720 -69222724 - HERVE LTR ERV1 -6509 387 1 2225 160 68 32 chr9 73048720 73049163 -69222281 - LTR2B LTR ERV1 0 490 32 4543 62 12 35 chr9 73049179 73049839 -69221605 + Harlequin LTR ERV1 632 1276 -5620 837 271 17 0 chr9 73050082 73050318 -69221126 + L1PA14 LINE L1 31 270 -6593 * 7515 130 64 13 chr9 73050317 73051746 -69219698 + L1PA14 LINE L1 1390 2890 -3973 921 217 58 9 chr9 73051742 73051968 -69219476 + L1 LINE L1 3280 3516 -3346 * 4827 167 7 38 chr9 73052071 73053764 -69217680 + L1PA10 LINE L1 2346 3973 -3611 * 10607 147 6 2 chr9 73053750 73055645 -69215799 + L1PA14 LINE L1 4220 6120 -757 3432 88 64 0 chr9 73055746 73056246 -69215198 + L1PA14 LINE L1 6337 6868 -9 582 280 104 35 chr9 73056757 73057075 -69214369 + Tigger8 DNA MER2_type 314 653 -13 1323 207 41 8 chr9 73057127 73057574 -69213870 + MLT1D LTR MaLR 1 505 0 512 299 64 6 chr9 73058753 73058910 -69212534 - MIR SINE MIR -96 166 1 726 150 0 9 chr9 73059517 73059630 -69211814 + FLAM_A SINE Alu 4 115 -18 519 17 0 0 chr9 73059630 73059690 -69211754 + (CATA)n Simple_repeat Simple_repeat 3 62 0 1426 166 0 0 chr9 73059821 73060080 -69211364 + L1PA10 LINE L1 4159 4417 -3167 6291 94 16 0 chr9 73060082 73061788 -69209656 + L1PA10 LINE L1 5877 7596 -10 323 162 0 29 chr9 73061810 73061878 -69209566 - L1MB8 LINE L1 -54 6124 6059 391 337 87 21 chr9 73061879 73062398 -69209046 - L1ME LINE L1 -303 5818 5265 9015 30 9 226 chr9 73062935 73064687 -69206757 - SVA Other Other 0 1386 15 260 311 38 98 chr9 73065040 73065172 -69206272 - L2 LINE L2 -20 3252 3129 460 313 59 64 chr9 73065476 73065988 -69205456 + L2 LINE L2 2724 3240 -73 528 326 53 32 chr9 73066999 73067284 -69204160 + MER102b DNA MER1_type 2 292 -49 210 37 0 0 chr9 73067335 73067362 -69204082 + (TG)n Simple_repeat Simple_repeat 1 27 0 232 299 93 19 chr9 73067405 73067512 -69203932 - L2 LINE L2 -236 3036 2922 180 0 0 0 chr9 73067539 73067559 -69203885 + (A)n Simple_repeat Simple_repeat 1 20 0 235 242 53 131 chr9 73067793 73068342 -69203102 - L1ME4a LINE L1 0 6121 5616 593 296 51 6 chr9 73069264 73069461 -69201983 - MIR SINE MIR -24 238 34 711 189 152 0 chr9 73069925 73070089 -69201355 - MER5A DNA MER1_type 0 189 1 27 62 0 0 chr9 73070632 73070680 -69200764 + AT_rich Low_complexity Low_complexity 1 48 0 420 323 32 42 chr9 73070884 73070919 -69200525 - MIR3 SINE MIR -21 187 153 1033 239 28 0 chr9 73070919 73071137 -69200307 - MER58A DNA MER1_type 0 224 1 420 323 32 42 chr9 73071137 73071290 -69200154 - MIR3 SINE MIR -55 153 1 459 0 0 0 chr9 73072299 73072350 -69199094 + (TG)n Simple_repeat Simple_repeat 2 52 0 310 280 107 13 chr9 73072994 73073144 -69198300 - L1ME4a LINE L1 -238 5883 5720 530 287 28 0 chr9 73073155 73073336 -69198108 - L1ME4a LINE L1 -448 5673 5488 646 291 112 24 chr9 73076435 73076731 -69194713 - MLT1I LTR MaLR -8 401 80 21 0 0 0 chr9 73077669 73077690 -69193754 + AT_rich Low_complexity Low_complexity 1 21 0 2279 105 0 25 chr9 73078615 73078929 -69192515 + AluSq SINE Alu 1 306 -7 231 61 0 0 chr9 73079212 73079245 -69192199 + (GA)n Simple_repeat Simple_repeat 2 34 0 423 0 0 0 chr9 73079918 73079965 -69191479 + (TG)n Simple_repeat Simple_repeat 2 48 0 33 0 0 0 chr9 73080407 73080440 -69191004 + AT_rich Low_complexity Low_complexity 1 33 0 413 115 13 0 chr9 73080441 73080519 -69190925 - L1PB1 LINE L1 0 6151 6073 5278 153 84 22 chr9 73081395 73082355 -69189089 - LTR28 LTR ERV1 0 1020 1 259 425 43 7 chr9 73082560 73082701 -69188743 - L2 LINE L2 -22 3250 3105 207 0 0 0 chr9 73085824 73085847 -69185597 + (CA)n Simple_repeat Simple_repeat 2 24 0 232 207 171 24 chr9 73086236 73086318 -69185126 - MER58 DNA MER1_type -3 2417 2324 331 255 11 11 chr9 73086322 73086416 -69185028 - MER58 DNA MER1_type -112 103 10 219 296 80 11 chr9 73086800 73086888 -69184556 - L3 LINE CR1 0 1577 1484 200 59 29 0 chr9 73086893 73086927 -69184517 + (CA)n Simple_repeat Simple_repeat 2 36 0 453 315 31 37 chr9 73087578 73087740 -69183704 + MIR3 SINE MIR 3 163 -45 2040 201 47 75 chr9 73087842 73088346 -69183098 - MER99 DNA DNA -41 787 271 678 25 0 0 chr9 73088346 73088426 -69183018 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 2000 87 0 8 chr9 73088432 73088684 -69182760 - AluSq SINE Alu -53 260 11 2040 201 47 75 chr9 73088684 73088784 -69182660 - MER99 DNA DNA -562 266 193 5625 132 19 37 chr9 73089101 73089369 -69182075 + L1PB2 LINE L1 4814 5085 -1066 1735 133 91 3 chr9 73089369 73089654 -69181790 - AluSg SINE Alu 0 310 1 5625 132 19 37 chr9 73089654 73090756 -69180688 + L1PB2 LINE L1 5085 6144 -7 28 91 0 0 chr9 73090756 73090833 -69180611 + AT_rich Low_complexity Low_complexity 1 77 0 24 32 0 0 chr9 73090944 73090975 -69180469 + AT_rich Low_complexity Low_complexity 1 31 0 318 231 0 0 chr9 73091092 73091157 -69180287 - MER99 DNA DNA -762 66 2 2381 128 80 5 chr9 73091458 73091856 -69179588 + MSTA LTR MaLR 1 428 0 412 298 49 49 chr9 73092582 73092787 -69178657 - MIR SINE MIR -29 233 29 180 288 110 27 chr9 73092832 73092905 -69178539 - L2 LINE L2 -57 3215 3137 21 36 0 0 chr9 73092924 73092952 -69178492 + AT_rich Low_complexity Low_complexity 1 28 0 203 311 172 8 chr9 73093001 73093123 -69178321 + MIR SINE MIR 6 147 -115 224 388 0 0 chr9 73093216 73093301 -69178143 - L2 LINE L2 -189 3083 2999 21 36 0 0 chr9 73093649 73093677 -69177767 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 73093789 73093811 -69177633 + AT_rich Low_complexity Low_complexity 1 22 0 221 330 50 30 chr9 73094295 73094395 -69177049 - MIR SINE MIR -81 127 26 27 29 0 0 chr9 73094555 73094589 -69176855 + AT_rich Low_complexity Low_complexity 1 34 0 2197 112 0 37 chr9 73094616 73094938 -69176506 - AluSx SINE Alu -2 310 1 25 0 0 0 chr9 73094980 73095005 -69176439 + AT_rich Low_complexity Low_complexity 1 25 0 272 311 84 18 chr9 73095032 73095199 -69176245 - MIR SINE MIR -10 252 75 726 179 0 0 chr9 73096117 73096234 -69175210 - FLAM_C SINE Alu -15 118 2 661 228 31 19 chr9 73096453 73096615 -69174829 - MIR SINE MIR -15 247 84 2156 98 40 98 chr9 73097950 73098397 -69173047 + SVA Other Other 446 866 -520 6690 58 7 37 chr9 73098414 73099377 -69172067 + SVA Other Other 433 1366 -20 239 0 32 0 chr9 73099380 73099411 -69172033 + (TAA)n Simple_repeat Simple_repeat 2 33 0 26 0 0 0 chr9 73099411 73099437 -69172007 + AT_rich Low_complexity Low_complexity 1 26 0 5247 160 11 48 chr9 73099438 73100929 -69170515 - L1PB1 LINE L1 -1 6150 4719 213 65 0 0 chr9 73100929 73100960 -69170484 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5247 160 11 48 chr9 73100960 73101379 -69170065 - L1PB1 LINE L1 -1432 4719 4286 324 147 15 0 chr9 73101380 73101448 -69169996 - L1M4 LINE L1 -1945 4917 4849 9920 112 37 16 chr9 73101549 73104024 -69167420 - L1PBa LINE L1 -3489 3373 697 2445 204 22 48 chr9 73104125 73104199 -69167245 + L1MB3 LINE L1 4927 5001 -1182 1209 126 0 0 chr9 73104199 73104397 -69167047 + L1MA4A LINE L1 6101 6298 -5 2445 204 22 48 chr9 73104397 73105296 -69166148 + L1MB3 LINE L1 5001 5866 -317 352 52 35 0 chr9 73105296 73105351 -69166093 + L1MB4 LINE L1 6120 6179 -1 346 278 76 0 chr9 73105495 73105639 -69165805 - L1M4 LINE L1 -873 5273 5119 1918 153 10 0 chr9 73105682 73105694 -69165750 - AluJb SINE Alu -11 301 291 846 98 0 0 chr9 73105694 73105816 -69165628 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1918 153 10 0 chr9 73105816 73106091 -69165353 - AluJb SINE Alu -21 291 11 1248 209 4 14 chr9 73106091 73106369 -69165075 + MER4D LTR ERV1 629 903 0 234 128 0 0 chr9 73107272 73107311 -69164133 + (T)n Simple_repeat Simple_repeat 1 39 0 4339 31 0 0 chr9 73107993 73108503 -69162941 - L1PA5 LINE L1 -6 6148 5639 1546 212 14 0 chr9 73108508 73108800 -69162644 - AluJb SINE Alu -15 297 2 240 279 115 10 chr9 73108995 73109099 -69162345 - MLT1K LTR MaLR -346 242 128 22 35 0 0 chr9 73109329 73109358 -69162086 + AT_rich Low_complexity Low_complexity 1 29 0 1618 236 107 84 chr9 73109402 73110603 -69160841 - HAL1 LINE L1 -46 2461 1233 2016 262 77 60 chr9 73110624 73111675 -69159769 - HAL1 LINE L1 -1341 1166 98 189 74 0 0 chr9 73112463 73112490 -69158954 + (T)n Simple_repeat Simple_repeat 1 27 0 3503 152 42 40 chr9 73113320 73114029 -69157415 - MER50 LTR ERV1 -23 711 1 328 284 101 9 chr9 73114568 73114677 -69156767 + L2 LINE L2 3154 3272 0 21 0 0 0 chr9 73116097 73116118 -69155326 + AT_rich Low_complexity Low_complexity 1 21 0 6410 63 15 53 chr9 73116132 73117124 -69154320 - SVA Other Other 0 1386 433 1173 84 9 61 chr9 73117240 73117803 -69153641 - SVA Other Other -520 866 508 5237 65 36 55 chr9 73117817 73118642 -69152802 - SVA Other Other -520 866 57 216 0 0 0 chr9 73118642 73118666 -69152778 + (GGGAGA)n Simple_repeat Simple_repeat 1 24 0 2179 113 0 0 chr9 73118880 73119199 -69152245 - AluSx SINE Alu 0 319 1 6406 71 15 2 chr9 73119319 73120208 -69151236 - L1PA7 LINE L1 0 6154 5255 743 314 96 14 chr9 73120213 73120630 -69150814 + MLT1J LTR MaLR 58 508 -3 23 0 0 0 chr9 73120833 73120856 -69150588 + AT_rich Low_complexity Low_complexity 1 23 0 892 158 82 0 chr9 73121075 73121246 -69150198 - MER5A DNA MER1_type 0 189 5 275 310 148 21 chr9 73121300 73121442 -69150002 + MER5B DNA MER1_type 1 160 -18 928 186 38 29 chr9 73121876 73122086 -69149358 + MSTB LTR MaLR 213 424 -2 7372 194 67 9 chr9 73122089 73123649 -69147795 + MSTB-int LTR MaLR 2 1651 0 1555 209 73 0 chr9 73123649 73123989 -69147455 + MSTB LTR MaLR 1 365 -61 190 140 20 20 chr9 73124009 73124059 -69147385 + (TA)n Simple_repeat Simple_repeat 1 50 0 280 310 140 12 chr9 73124230 73124401 -69147043 - MLT1D LTR MaLR 0 505 313 225 227 0 0 chr9 73124593 73124637 -69146807 + MER20 DNA MER1_type 176 219 0 1007 149 62 98 chr9 73125020 73125427 -69146017 - MLT1C LTR MaLR 0 467 11 7373 176 14 6 chr9 73125454 73127997 -69143447 - L1PB1 LINE L1 -1 6150 3592 1893 164 66 94 chr9 73128130 73128659 -69142785 + LTR8A LTR ERV1 214 727 0 25 31 0 0 chr9 73128985 73129017 -69142427 + AT_rich Low_complexity Low_complexity 1 32 0 365 144 52 13 chr9 73129023 73129152 -69142292 + (TA)n Simple_repeat Simple_repeat 1 138 -21 2070 119 3 3 chr9 73129152 73129438 -69142006 - AluSg SINE Alu -24 286 1 365 144 52 13 chr9 73129438 73129461 -69141983 + (TA)n Simple_repeat Simple_repeat 138 159 0 269 273 137 36 chr9 73129982 73130121 -69141323 - MIR SINE MIR -26 236 84 280 222 63 87 chr9 73130459 73130585 -69140859 - L2 LINE L2 -9 3263 3141 827 124 118 0 chr9 73130670 73130839 -69140605 - MER20 DNA MER1_type 0 219 31 379 308 54 22 chr9 73130955 73131140 -69140304 - MIR SINE MIR -48 214 24 2140 112 135 23 chr9 73131202 73131587 -69139857 + MSTA LTR MaLR 1 428 0 263 365 17 9 chr9 73133048 73133163 -69138281 + L2 LINE L2 2962 3077 -195 215 257 176 0 chr9 73133267 73133341 -69138103 + L2 LINE L2 3186 3272 0 2891 105 19 21 chr9 73134017 73134446 -69136998 + MSTC LTR MaLR 1 428 0 240 333 0 0 chr9 73134446 73134521 -69136923 + LTR33 LTR ERVL 107 181 -340 307 123 15 31 chr9 73134814 73134879 -69136565 + LTR33A LTR ERVL 432 495 -28 234 0 0 0 chr9 73135010 73135036 -69136408 + (CA)n Simple_repeat Simple_repeat 1 26 0 227 376 74 27 chr9 73135178 73135327 -69136117 + L2 LINE L2 2571 2726 -588 22 35 0 0 chr9 73135357 73135386 -69136058 + AT_rich Low_complexity Low_complexity 1 29 0 2185 117 0 26 chr9 73135509 73135816 -69135628 - AluSx SINE Alu -13 299 1 2164 133 3 3 chr9 73135845 73136177 -69135267 + L1PA16 LINE L1 5826 6157 -9 5058 199 35 71 chr9 73136247 73137305 -69134139 + L1 LINE L1 3146 4127 -2019 1841 130 138 51 chr9 73137305 73137520 -69133924 - MSTA LTR MaLR -3 425 230 2380 75 3 0 chr9 73137520 73137815 -69133629 - AluY SINE Alu -15 296 1 1841 130 138 51 chr9 73137815 73137990 -69133454 - MSTA LTR MaLR -198 230 1 5058 199 35 71 chr9 73137990 73138551 -69132893 + L1 LINE L1 4127 4707 -1439 752 171 14 7 chr9 73138656 73138802 -69132642 - MER20 DNA MER1_type -33 186 40 1628 212 0 3 chr9 73138909 73139201 -69132243 + AluJo SINE Alu 1 291 -21 1129 254 111 42 chr9 73140848 73141352 -69130092 + MER34 LTR ERV1 4 542 0 408 305 89 16 chr9 73141444 73141634 -69129810 - MIR SINE MIR -30 232 29 350 193 59 67 chr9 73143330 73143465 -69127979 + MLT1I LTR MaLR 272 405 -4 355 219 63 172 chr9 73143529 73143767 -69127677 + MIR SINE MIR 41 252 -10 7809 113 2 6 chr9 73144090 73145239 -69126205 + THE1C-int LTR MaLR 437 1580 0 2362 102 17 17 chr9 73145239 73145601 -69125843 + THE1C LTR MaLR 1 362 -13 540 97 11 54 chr9 73145599 73145692 -69125752 + MER4D LTR ERV1 815 903 0 * 407 319 48 21 chr9 73145882 73146070 -69125374 - MLT1K LTR MaLR -304 284 92 256 348 17 34 chr9 73146193 73146311 -69125133 + MIR SINE MIR 7 123 -85 222 347 18 84 chr9 73147684 73147910 -69123534 + MIR SINE MIR 4 210 -52 365 246 53 97 chr9 73148006 73148213 -69123231 - MIR SINE MIR -45 217 20 715 186 0 0 chr9 73148518 73148636 -69122808 + FLAM_C SINE Alu 1 118 -15 770 254 32 23 chr9 73149700 73149920 -69121524 + MIR SINE MIR 5 226 -36 1914 158 71 13 chr9 73150645 73151026 -69120418 + L1MD1 LINE L1 5833 6235 -7 234 250 44 0 chr9 73151157 73151225 -69120219 - MIR SINE MIR -63 199 129 31 26 0 0 chr9 73151705 73151743 -69119701 + AT_rich Low_complexity Low_complexity 1 38 0 379 293 108 24 chr9 73152050 73152217 -69119227 + MIR3 SINE MIR 25 205 -3 195 42 0 0 chr9 73152623 73152647 -69118797 + (A)n Simple_repeat Simple_repeat 1 24 0 565 366 31 0 chr9 73152844 73153068 -69118376 - MIR SINE MIR -4 258 28 205 351 0 0 chr9 73153160 73153217 -69118227 - MIR SINE MIR -148 114 58 668 106 0 3 chr9 73153820 73154039 -69117405 + AluSx SINE Alu 1 274 -38 521 148 0 0 chr9 73154140 73154221 -69117223 + AluSg/x SINE Alu 211 291 -19 714 206 133 54 chr9 73154224 73154539 -69116905 + L1MC4 LINE L1 7703 8042 0 1777 137 68 10 chr9 73154806 73155098 -69116346 - AluJb SINE Alu -2 310 2 2065 87 7 3 chr9 73155580 73155869 -69115575 - L1PA10 LINE L1 -271 5897 5608 295 61 38 19 chr9 73155868 73155920 -69115524 + L1PA10 LINE L1 6104 6164 -4 * 238 67 44 0 chr9 73156288 73156333 -69115111 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1750 178 13 7 chr9 73157514 73157817 -69113627 - AluJb SINE Alu -7 305 1 374 179 19 57 chr9 73157930 73158036 -69113408 + MER103 DNA DNA 64 165 -1 216 329 25 0 chr9 73158293 73158372 -69113072 + L2 LINE L2 3190 3270 -2 21 36 0 0 chr9 73159854 73159882 -69111562 + AT_rich Low_complexity Low_complexity 1 28 0 393 257 197 33 chr9 73160724 73160876 -69110568 - MER5A DNA MER1_type -6 183 7 449 314 50 45 chr9 73161895 73162137 -69109307 - MIR SINE MIR -6 256 14 185 212 0 0 chr9 73162827 73162860 -69108584 + MIR SINE MIR 218 250 -12 192 270 95 16 chr9 73163612 73163675 -69107769 + L2 LINE L2 3194 3261 -11 561 146 0 0 chr9 73164801 73164883 -69106561 + FLAM SINE Alu 42 123 -20 225 189 132 0 chr9 73165584 73165637 -69105807 + MIR SINE MIR 123 182 -80 309 256 49 0 chr9 73165829 73165911 -69105533 - MSTD LTR MaLR -307 89 4 320 157 0 0 chr9 73165967 73166018 -69105426 + MER5B DNA MER1_type 126 176 -2 2073 108 0 49 chr9 73166048 73166533 -69104911 + AluSx SINE Alu 7 476 0 2173 93 26 13 chr9 73167060 73167362 -69104082 - AluSq SINE Alu -7 306 1 238 189 38 0 chr9 73169014 73169067 -69102377 + (TA)n Simple_repeat Simple_repeat 2 56 0 196 204 37 19 chr9 73169157 73169211 -69102233 + L3 LINE CR1 1229 1283 -294 1936 126 47 27 chr9 73169243 73169608 -69101836 - L1MA8 LINE L1 -113 6178 5807 325 256 85 0 chr9 73171659 73171741 -69099703 + MER5A DNA MER1_type 14 102 -87 288 372 7 15 chr9 73173642 73173779 -69097665 + L2 LINE L2 3133 3268 -4 1055 176 13 48 chr9 73173901 73174128 -69097316 - MER20 DNA MER1_type 0 219 1 31 0 0 0 chr9 73175038 73175069 -69096375 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 73176520 73176544 -69094900 + (T)n Simple_repeat Simple_repeat 1 24 0 842 77 0 0 chr9 73176855 73176959 -69094485 - AluSg/x SINE Alu -20 289 186 22 0 0 0 chr9 73178185 73178207 -69093237 + AT_rich Low_complexity Low_complexity 1 22 0 2271 69 21 0 chr9 73178880 73179168 -69092276 + AluY SINE Alu 9 302 -9 1629 5 5 0 chr9 73179430 73179616 -69091828 - L1HS LINE L1 0 6155 5969 460 307 93 21 chr9 73180052 73180261 -69091183 - MIR SINE MIR -12 250 31 758 97 0 9 chr9 73180411 73180525 -69090919 + MER30B DNA MER1_type 1 113 -77 496 367 25 4 chr9 73183951 73184188 -69087256 + MIR SINE MIR 20 261 -1 693 58 0 0 chr9 73185196 73185283 -69086161 + AluSc SINE Alu 1 87 -222 25 65 0 0 chr9 73185572 73185618 -69085826 + AT_rich Low_complexity Low_complexity 1 46 0 252 324 216 7 chr9 73187016 73187164 -69084280 - MIR3 SINE MIR -16 192 14 265 313 27 0 chr9 73188453 73188565 -69082879 - MER103 DNA DNA -49 117 3 190 235 250 0 chr9 73189002 73189070 -69082374 + L2 LINE L2 3151 3235 -37 729 301 57 4 chr9 73189193 73189422 -69082022 - MIR SINE MIR -19 243 3 185 298 35 35 chr9 73191049 73191106 -69080338 + MIR SINE MIR 41 97 -165 1136 150 0 6 chr9 73191350 73191523 -69079921 + AluSg/x SINE Alu 141 312 0 192 159 68 0 chr9 73191558 73191602 -69079842 + MIR SINE MIR 160 206 -56 1535 177 4 15 chr9 73191727 73191992 -69079452 - AluJo SINE Alu -41 271 10 570 209 0 0 chr9 73192002 73192107 -69079337 - FLAM_C SINE Alu -18 125 21 200 336 102 36 chr9 73192454 73192591 -69078853 + L2 LINE L2 2910 3055 -217 691 262 12 18 chr9 73194245 73194409 -69077035 + MER5A DNA MER1_type 21 183 -6 208 237 254 25 chr9 73194787 73194905 -69076539 - MIR SINE MIR -17 245 101 29 0 0 0 chr9 73195578 73195607 -69075837 + AT_rich Low_complexity Low_complexity 1 29 0 2079 103 0 4 chr9 73195781 73196054 -69075390 - AluSc SINE Alu -10 299 28 2191 106 7 0 chr9 73196086 73196379 -69075065 - AluSq SINE Alu -18 295 1 475 315 35 35 chr9 73196431 73196628 -69074816 + MIR SINE MIR 24 220 -42 1939 109 0 0 chr9 73196898 73197154 -69074290 - AluSx SINE Alu -56 256 1 180 256 133 44 chr9 73198887 73198977 -69072467 + L2 LINE L2 3173 3270 -2 21 0 0 0 chr9 73201953 73201974 -69069470 + AT_rich Low_complexity Low_complexity 1 21 0 260 321 0 48 chr9 73204738 73204822 -69066622 + MER5A DNA MER1_type 18 97 -92 257 325 133 40 chr9 73205025 73205176 -69066268 + MIR3 SINE MIR 20 184 -24 500 314 93 8 chr9 73205328 73205553 -69065891 - MIR SINE MIR -17 245 2 403 294 89 42 chr9 73205693 73205951 -69065493 + L2 LINE L2 2783 3046 -226 189 214 14 100 chr9 73206258 73206328 -69065116 + MIR SINE MIR 172 235 -27 772 228 76 5 chr9 73206765 73206976 -69064468 + MIR SINE MIR 37 262 0 315 71 0 0 chr9 73206982 73207024 -69064420 + (TG)n Simple_repeat Simple_repeat 1 42 0 655 270 22 11 chr9 73207463 73207641 -69063803 - MIR SINE MIR -4 258 79 389 271 121 15 chr9 73211938 73212074 -69059370 - MIR SINE MIR -86 122 3 514 269 62 6 chr9 73212208 73212368 -69059076 - MER58A DNA MER1_type -37 187 19 234 62 0 0 chr9 73213250 73213282 -69058162 + (CA)n Simple_repeat Simple_repeat 1 32 0 527 146 0 19 chr9 73213559 73213654 -69057790 + MLT1A2 LTR MaLR 1 93 -281 465 95 0 0 chr9 73213654 73213717 -69057727 - THE1C LTR MaLR 0 375 313 217 273 45 0 chr9 73214623 73214689 -69056755 - L2 LINE L2 -35 3278 3210 307 279 12 43 chr9 73214957 73215118 -69056326 + (TCTCTG)n Simple_repeat Simple_repeat 4 159 0 290 287 22 39 chr9 73215069 73215250 -69056194 + (TCTG)n Simple_repeat Simple_repeat 3 180 0 * 912 143 0 0 chr9 73215658 73215791 -69055653 - AluSq/x SINE Alu -179 133 1 726 158 16 0 chr9 73217049 73217176 -69054268 + AluSg/x SINE Alu 182 310 0 582 306 103 64 chr9 73217762 73218474 -69052970 - L2 LINE L2 -8 3264 2525 436 63 48 16 chr9 73218504 73218567 -69052877 + Alu SINE Alu 226 290 -20 210 200 20 0 chr9 73220804 73220854 -69050590 + (TA)n Simple_repeat Simple_repeat 1 51 0 1362 78 0 11 chr9 73221929 73222108 -69049336 + AluSx SINE Alu 1 177 -135 448 174 61 51 chr9 73222291 73222389 -69049055 - FLAM_A SINE Alu -18 124 26 387 278 0 0 chr9 73222531 73222628 -69048816 + Charlie5 DNA MER1_type 1 97 -2515 1927 152 3 3 chr9 73222643 73222939 -69048505 + AluJb SINE Alu 1 296 -16 640 201 105 21 chr9 73222960 73223199 -69048245 + Charlie5 DNA MER1_type 2301 2559 -53 315 292 86 111 chr9 73223912 73224237 -69047207 - L2 LINE L2 -8 3264 2948 207 171 0 0 chr9 73224237 73224272 -69047172 + GA-rich Low_complexity Low_complexity 2 36 0 399 283 45 57 chr9 73224351 73224595 -69046849 - L2 LINE L2 -455 2859 2619 1918 161 6 6 chr9 73225148 73225483 -69045961 + MSTB-int LTR MaLR 1317 1651 0 1829 171 68 11 chr9 73225483 73225834 -69045610 + MSTB LTR MaLR 1 371 -55 266 132 19 0 chr9 73225841 73225894 -69045550 + (TA)n Simple_repeat Simple_repeat 1 54 0 593 246 134 6 chr9 73226065 73226244 -69045200 - MLT1A1 LTR MaLR 0 505 304 22 35 0 0 chr9 73226412 73226441 -69045003 + AT_rich Low_complexity Low_complexity 1 29 0 927 248 14 5 chr9 73227216 73227435 -69044009 - MLT1A1 LTR MaLR -56 309 89 1013 119 0 19 chr9 73227435 73227595 -69043849 + THE1C LTR MaLR 1 157 -218 766 201 81 11 chr9 73228392 73228566 -69042878 - MER5A DNA MER1_type 0 189 4 22 0 0 0 chr9 73229294 73229316 -69042128 + AT_rich Low_complexity Low_complexity 1 22 0 2160 128 0 0 chr9 73229419 73229715 -69041729 - AluSx SINE Alu -16 296 1 38 61 0 0 chr9 73230389 73230455 -69040989 + AT_rich Low_complexity Low_complexity 1 66 0 383 356 132 6 chr9 73231043 73231217 -69040227 + MER91A DNA MER1_type 1 196 0 22 35 0 0 chr9 73231666 73231695 -69039749 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 73231734 73231762 -69039682 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 73232240 73232263 -69039181 + AT_rich Low_complexity Low_complexity 1 23 0 2054 106 7 3 chr9 73234857 73235172 -69036272 - AluSg SINE Alu 0 310 1 1965 167 15 0 chr9 73235287 73235628 -69035816 + Tigger1 DNA MER2_type 3 348 -2070 327 243 112 0 chr9 73237129 73237236 -69034208 + MER112 DNA MER1_type 95 213 -47 201 39 0 0 chr9 73237311 73237337 -69034107 + (TA)n Simple_repeat Simple_repeat 2 27 0 267 317 49 42 chr9 73237353 73237495 -69033949 - L2 LINE L2 -514 2800 2658 190 363 128 10 chr9 73237803 73237905 -69033539 - L2 LINE L2 0 3272 3159 208 213 0 43 chr9 73239041 73239088 -69032356 + MIR3 SINE MIR 127 171 -37 218 131 48 36 chr9 73239282 73239366 -69032078 + (TATAA)n Simple_repeat Simple_repeat 1 85 0 354 281 54 38 chr9 73240678 73240863 -69030581 + MLT1K LTR MaLR 399 586 -2 21 0 0 0 chr9 73241852 73241873 -69029571 + AT_rich Low_complexity Low_complexity 1 21 0 397 282 89 54 chr9 73241945 73242225 -69029219 + L1ME4a LINE L1 5564 5853 -268 381 167 0 0 chr9 73242327 73242393 -69029051 + Tigger1 DNA MER2_type 699 764 -1654 991 135 99 5 chr9 73242412 73242604 -69028840 + Tigger1 DNA MER2_type 2209 2418 0 326 347 137 38 chr9 73243663 73243925 -69027519 + L2 LINE L2 2985 3272 0 46 95 0 0 chr9 73244913 73245050 -69026394 + AT_rich Low_complexity Low_complexity 1 137 0 23 33 0 0 chr9 73245173 73245203 -69026241 + AT_rich Low_complexity Low_complexity 1 30 0 5288 213 19 7 chr9 73245416 73247441 -69024003 - L1MC1 LINE L1 -28 6585 4536 2988 226 66 24 chr9 73247435 73247834 -69023610 - L1MC1 LINE L1 -2450 3976 3595 * 1671 160 25 18 chr9 73247834 73248116 -69023328 - AluJo SINE Alu -15 297 14 2988 226 66 24 chr9 73248116 73249850 -69021594 - L1MC1 LINE L1 -2831 3595 1757 927 104 15 0 chr9 73249850 73249985 -69021459 - AluSp/q SINE Alu 0 313 177 2026 73 0 11 chr9 73250175 73250450 -69020994 - L1PA7 LINE L1 -3 6151 5880 254 338 12 0 chr9 73251919 73251999 -69019445 + MIR SINE MIR 80 160 -102 22 0 0 0 chr9 73253248 73253270 -69018174 + AT_rich Low_complexity Low_complexity 1 22 0 1048 209 9 0 chr9 73253688 73253899 -69017545 - L1MB5 LINE L1 -8 6166 5954 436 279 22 22 chr9 73255029 73255208 -69016236 + L1MEd LINE L1 6 184 -5935 580 276 57 13 chr9 73256032 73256260 -69015184 + L1MEd LINE L1 896 1133 -4986 252 325 24 12 chr9 73256499 73256582 -69014862 + L1ME LINE L1 53 136 -5983 401 321 64 63 chr9 73256882 73257491 -69013953 + L1ME LINE L1 580 1199 -4930 5893 107 24 1 chr9 73257491 73259133 -69012311 + L1PA16 LINE L1 4488 6153 -13 401 321 64 63 chr9 73259133 73259199 -69012245 + L1ME LINE L1 1199 1263 -4866 420 167 0 0 chr9 73259199 73259271 -69012173 + FLAM_A SINE Alu 43 114 -28 522 270 74 72 chr9 73259301 73259739 -69011705 + L1ME LINE L1 1248 1729 -4451 2395 247 65 29 chr9 73259945 73260215 -69011229 + L1M4 LINE L1 3572 3831 -2315 1890 105 44 34 chr9 73260215 73260511 -69010933 + AluSq SINE Alu 1 299 -14 2395 247 65 29 chr9 73260511 73261117 -69010327 + L1M4 LINE L1 3831 4480 -1666 * 3174 157 18 9 chr9 73261113 73261154 -69010290 + L1MA9 LINE L1 5607 5646 -666 3386 159 13 16 chr9 73261154 73261759 -69009685 + MER6A DNA MER2_type 2 604 -1 3174 157 18 9 chr9 73261759 73262270 -69009174 + L1MA9 LINE L1 5646 6164 -148 667 167 35 0 chr9 73262554 73262698 -69008746 + L1MA9 LINE L1 6164 6312 0 902 235 95 16 chr9 73262908 73263237 -69008207 + L1ME LINE L1 2842 3205 -2924 2282 95 0 3 chr9 73263237 73263543 -69007901 + AluSc SINE Alu 3 307 -2 902 235 95 16 chr9 73263543 73263583 -69007861 + L1ME LINE L1 3205 3240 -2889 490 264 35 0 chr9 73263747 73263903 -69007541 - MSTC LTR MaLR -234 162 2 219 69 0 0 chr9 73263903 73263932 -69007512 + (CA)n Simple_repeat Simple_repeat 1 29 0 318 148 0 0 chr9 73263932 73263986 -69007458 + (TA)n Simple_repeat Simple_repeat 1 54 0 271 276 23 0 chr9 73263987 73264074 -69007370 + L1MC4 LINE L1 6614 6702 -1340 246 278 0 0 chr9 73264075 73264129 -69007315 + (TA)n Simple_repeat Simple_repeat 2 55 0 253 287 23 0 chr9 73264129 73264216 -69007228 + L1MC4 LINE L1 6614 6702 -1340 226 286 0 22 chr9 73264226 73264317 -69007127 - L1MC4 LINE L1 -1340 6702 6614 305 333 0 0 chr9 73264321 73264411 -69007033 - L1MC4 LINE L1 -1339 6703 6614 390 205 0 0 chr9 73264414 73264497 -69006947 + (TA)n Simple_repeat Simple_repeat 1 83 0 254 221 70 35 chr9 73264505 73264591 -69006853 + L1MC4 LINE L1 6614 6702 -1340 247 300 0 0 chr9 73264597 73264687 -69006757 + L1MC4 LINE L1 6614 6703 -1339 195 129 0 0 chr9 73264690 73264721 -69006723 + (TA)n Simple_repeat Simple_repeat 1 31 0 425 260 0 0 chr9 73265315 73265411 -69006033 + MIR SINE MIR 160 255 -7 412 269 172 48 chr9 73267242 73267428 -69004016 - MER63A DNA MER1_type 0 210 2 537 293 12 36 chr9 73268001 73268168 -69003276 + LTR33 LTR ERVL 3 165 -356 549 342 49 12 chr9 73268174 73268417 -69003027 + LTR33 LTR ERVL 269 520 -1 1769 59 0 5 chr9 73268626 73268847 -69002597 - AluY SINE Alu -12 299 80 305 258 11 21 chr9 73270617 73270710 -69000734 - MLT1I LTR MaLR 0 409 318 312 304 148 30 chr9 73270932 73271284 -69000160 + MLT1I LTR MaLR 22 417 -33 1486 166 13 53 chr9 73274588 73274889 -68996555 + AluJo SINE Alu 11 299 -13 302 341 85 27 chr9 73275107 73275330 -68996114 - MIR SINE MIR -16 246 11 506 226 7 15 chr9 73275573 73275710 -68995734 + L1M4 LINE L1 3558 3693 -2453 1724 184 32 3 chr9 73275714 73276030 -68995414 - MER44D DNA MER2_type 0 605 409 1106 177 72 24 chr9 73276020 73276259 -68995185 - Tigger7 DNA MER2_type -462 243 1 * 209 203 31 16 chr9 73276388 73276452 -68994992 + (TA)n Simple_repeat Simple_repeat 2 66 0 220 383 32 0 chr9 73277441 73277535 -68993909 + L2 LINE L2 3172 3268 -4 828 272 66 9 chr9 73277610 73277838 -68993606 - MIR SINE MIR -21 241 1 2138 77 0 17 chr9 73278438 73278776 -68992668 + AluY SINE Alu 1 333 0 351 0 0 0 chr9 73279461 73279500 -68991944 + (TG)n Simple_repeat Simple_repeat 1 39 0 2347 43 0 0 chr9 73279500 73279778 -68991666 - AluY SINE Alu -33 278 1 2159 86 34 3 chr9 73280319 73280635 -68990809 + AluSq SINE Alu 1 313 0 428 326 8 8 chr9 73281178 73281307 -68990137 - L2 LINE L2 -6 3307 3179 304 145 53 13 chr9 73282371 73282421 -68989023 - MADE1 DNA Mariner 0 80 25 2233 113 0 0 chr9 73282421 73282721 -68988723 + AluSq SINE Alu 1 300 -13 304 145 53 13 chr9 73282721 73282746 -68988698 - MADE1 DNA Mariner -55 25 2 1528 230 40 40 chr9 73283542 73284011 -68987433 - MLT1D LTR MaLR 0 505 37 1295 285 94 35 chr9 73284016 73285171 -68986273 + L1ME LINE L1 463 1666 -4414 293 303 24 18 chr9 73285228 73285393 -68986051 + L1MA10 LINE L1 6169 6334 0 624 336 119 44 chr9 73285663 73286483 -68984961 + L2 LINE L2 2434 3311 -2 191 214 0 18 chr9 73287427 73287483 -68983961 + (TATG)n Simple_repeat Simple_repeat 2 56 0 213 39 0 0 chr9 73287551 73287577 -68983867 + (TG)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr9 73288097 73288120 -68983324 + (CA)n Simple_repeat Simple_repeat 1 23 0 1066 124 11 0 chr9 73288585 73288763 -68982681 - L1MA4A LINE L1 0 6303 6124 22 0 0 0 chr9 73289796 73289818 -68981626 + AT_rich Low_complexity Low_complexity 1 22 0 647 235 6 13 chr9 73290007 73290187 -68981257 + MSTD LTR MaLR 1 176 -189 629 280 62 96 chr9 73290187 73290877 -68980567 - PABL_B LTR ERV1 0 667 1 * 852 200 6 33 chr9 73290877 73291048 -68980396 + MSTD LTR MaLR 231 396 0 6491 226 83 27 chr9 73291050 73291260 -68980184 + MSTD-int LTR MaLR 2 199 -1536 1133 214 60 42 chr9 73291260 73291596 -68979848 - MER2 DNA MER2_type -1 343 2 6491 226 83 27 chr9 73291596 73291918 -68979526 + MSTD-int LTR MaLR 199 502 -1233 1432 170 50 50 chr9 73291918 73292243 -68979201 + AluJb SINE Alu 1 325 0 6491 226 83 27 chr9 73292243 73293350 -68978094 + MSTD-int LTR MaLR 502 1735 0 1034 203 56 25 chr9 73293350 73293694 -68977750 + MSTD LTR MaLR 1 396 0 21 0 0 0 chr9 73294464 73294485 -68976959 + AT_rich Low_complexity Low_complexity 1 21 0 268 301 59 72 chr9 73294797 73294950 -68976494 - MIR3 SINE MIR -43 165 15 25 31 0 0 chr9 73295752 73295784 -68975660 + AT_rich Low_complexity Low_complexity 1 32 0 281 375 23 0 chr9 73296242 73296370 -68975074 - L3 LINE CR1 -3 1574 1444 23 68 0 0 chr9 73296875 73296919 -68974525 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr9 73297432 73297469 -68973975 + AT_rich Low_complexity Low_complexity 1 37 0 1338 250 108 30 chr9 73297548 73298076 -68973368 - L1ME1 LINE L1 -5 6161 5593 276 30 0 0 chr9 73298108 73298141 -68973303 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 192 231 0 0 chr9 73298224 73298276 -68973168 + (TA)n Simple_repeat Simple_repeat 1 52 0 2023 232 72 56 chr9 73298370 73299011 -68972433 - MLT1E1 LTR MaLR -3 651 1 23 0 0 0 chr9 73299996 73300019 -68971425 + AT_rich Low_complexity Low_complexity 1 23 0 8248 52 0 0 chr9 73300276 73301244 -68970200 + LTR5 LTR ERVK 2 969 0 27 29 0 0 chr9 73301760 73301794 -68969650 + AT_rich Low_complexity Low_complexity 1 34 0 479 317 96 5 chr9 73302012 73302211 -68969233 + MIR SINE MIR 10 226 -36 21 0 0 0 chr9 73302397 73302418 -68969026 + AT_rich Low_complexity Low_complexity 1 21 0 459 263 68 71 chr9 73302662 73303000 -68968444 + L1MEd LINE L1 895 1231 -4888 186 267 12 35 chr9 73303816 73303902 -68967542 + MER5C DNA MER1_type 41 124 -200 322 143 0 29 chr9 73303987 73304057 -68967387 + (GGAA)n Simple_repeat Simple_repeat 2 69 0 226 304 52 87 chr9 73304645 73304820 -68966624 + MIR3 SINE MIR 39 208 0 209 268 175 10 chr9 73304920 73305017 -68966427 - MIR3 SINE MIR -23 185 73 1863 145 48 40 chr9 73305029 73305401 -68966043 + THE1C LTR MaLR 1 375 0 191 277 46 0 chr9 73305442 73305507 -68965937 + MIR SINE MIR 185 252 -10 351 330 93 21 chr9 73305646 73305840 -68965604 - MIR SINE MIR -1 261 54 28 29 0 0 chr9 73305857 73305892 -68965552 + AT_rich Low_complexity Low_complexity 1 35 0 260 228 0 25 chr9 73306080 73306159 -68965285 + A-rich Low_complexity Low_complexity 3 79 0 2341 62 6 38 chr9 73306993 73307313 -68964131 + AluY SINE Alu 1 310 -1 1978 134 3 0 chr9 73309221 73309525 -68961919 - AluSx SINE Alu 0 305 1 556 302 262 31 chr9 73309668 73309742 -68961702 + L2 LINE L2 1814 1870 -1444 1044 166 90 63 chr9 73309742 73310153 -68961291 - LTR37A LTR ERV1 -4 422 1 556 302 262 31 chr9 73310153 73310528 -68960916 + L2 LINE L2 1870 2367 -947 336 125 0 0 chr9 73310549 73310613 -68960831 + (CA)n Simple_repeat Simple_repeat 2 65 0 227 299 39 0 chr9 73310777 73310854 -68960590 + L2 LINE L2 2644 2723 -591 953 271 71 64 chr9 73310859 73311280 -68960164 + L2 LINE L2 2885 3308 -5 26 64 0 0 chr9 73311743 73311790 -68959654 + AT_rich Low_complexity Low_complexity 1 47 0 2105 125 0 0 chr9 73312159 73312446 -68958998 - AluSq SINE Alu -15 298 12 318 321 100 7 chr9 73312510 73312650 -68958794 - MLT1K LTR MaLR -103 485 333 429 314 96 56 chr9 73312916 73313311 -68958133 + L1ME3A LINE L1 4542 4952 -1194 241 314 17 17 chr9 73313324 73313499 -68957945 + L1ME3A LINE L1 5031 5205 -941 1845 253 81 52 chr9 73314445 73315133 -68956311 + L1ME3A LINE L1 5456 6163 -7 1191 160 37 62 chr9 73315419 73315663 -68955781 - MSTB LTR MaLR 0 426 189 197 33 33 0 chr9 73315693 73315723 -68955721 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 14646 164 59 6 chr9 73315729 73316075 -68955369 - L1PB1 LINE L1 -10 6857 6531 338 57 19 0 chr9 73316075 73316128 -68955316 + (TG)n Simple_repeat Simple_repeat 2 55 0 14646 164 59 6 chr9 73316128 73321681 -68949763 - L1PB1 LINE L1 -336 6531 636 1099 168 5 0 chr9 73321683 73321880 -68949564 - L1PB1 LINE L1 -6663 200 3 876 119 43 47 chr9 73321894 73322067 -68949377 - MSTB LTR MaLR -233 199 2 1254 257 116 39 chr9 73322612 73323325 -68948119 - LTR1B LTR ERV1 0 826 59 221 197 16 0 chr9 73323503 73323564 -68947880 + (TA)n Simple_repeat Simple_repeat 1 62 0 2194 103 7 0 chr9 73324568 73324858 -68946586 + AluSq SINE Alu 1 292 -21 22 0 0 0 chr9 73324858 73324880 -68946564 + AT_rich Low_complexity Low_complexity 1 22 0 561 272 124 32 chr9 73324889 73325644 -68945800 - L1ME2 LINE L1 -258 5906 5083 2105 134 0 0 chr9 73325946 73326237 -68945207 + AluSx SINE Alu 1 291 -21 1531 198 24 7 chr9 73327230 73327528 -68943916 + AluJo SINE Alu 1 303 -9 314 321 47 19 chr9 73327842 73327948 -68943496 - L2 LINE L2 -23 3290 3182 195 69 0 0 chr9 73329206 73329235 -68942209 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 2398 93 0 0 chr9 73329836 73330137 -68941307 - AluSc SINE Alu -7 302 2 1385 198 58 70 chr9 73330490 73330614 -68940830 + MLT1B LTR MaLR 1 125 -265 2383 88 0 0 chr9 73330614 73330911 -68940533 + AluSg SINE Alu 1 297 -13 1385 198 58 70 chr9 73330911 73331236 -68940208 + MLT1B LTR MaLR 125 385 -5 27 0 0 0 chr9 73331236 73331263 -68940181 + AT_rich Low_complexity Low_complexity 1 27 0 211 293 0 12 chr9 73332371 73332453 -68938991 + (TA)n Simple_repeat Simple_repeat 2 82 0 527 297 100 21 chr9 73333233 73333523 -68937921 + MER102b DNA MER1_type 29 341 0 2202 8 0 0 chr9 73333568 73333836 -68937608 - AluYa5 SINE Alu 0 339 72 464 311 109 5 chr9 73334388 73334581 -68936863 + MIR SINE MIR 49 261 -1 467 158 38 98 chr9 73334688 73334821 -68936623 - L2 LINE L2 -5 3308 3184 320 333 102 28 chr9 73335642 73335819 -68935625 + MIR3 SINE MIR 13 202 -6 273 241 13 0 chr9 73336723 73336802 -68934642 + T-rich Low_complexity Low_complexity 1 80 0 26 0 0 0 chr9 73337552 73337578 -68933866 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr9 73338037 73338073 -68933371 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr9 73338644 73338679 -68932765 + AT_rich Low_complexity Low_complexity 1 35 0 2900 187 21 7 chr9 73338727 73339298 -68932146 + L1MB2 LINE L1 5543 6121 -50 36 0 0 0 chr9 73339314 73339350 -68932094 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr9 73339489 73339509 -68931935 + (TC)n Simple_repeat Simple_repeat 2 21 0 254 202 50 20 chr9 73339510 73339609 -68931835 + (TA)n Simple_repeat Simple_repeat 1 102 0 243 318 12 12 chr9 73340212 73340297 -68931147 - MIR SINE MIR -96 166 82 1273 139 73 0 chr9 73341384 73341629 -68929815 + L1MA8 LINE L1 6029 6291 0 350 317 68 0 chr9 73342199 73342360 -68929084 + L1ME LINE L1 5536 5707 -414 190 179 0 26 chr9 73343113 73343152 -68928292 + L2 LINE L2 96 133 -3181 351 0 0 0 chr9 73343458 73343497 -68927947 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1934 138 11 0 chr9 73343500 73343782 -68927662 - AluSg SINE Alu -25 285 1 2195 124 0 0 chr9 73346444 73346743 -68924701 + AluSx SINE Alu 4 302 -10 256 254 0 34 chr9 73347161 73347220 -68924224 + LTR67 LTR ERVL 494 550 -7 25 0 0 0 chr9 73347513 73347538 -68923906 + AT_rich Low_complexity Low_complexity 1 25 0 2267 94 0 49 chr9 73347768 73348096 -68923348 - AluSq SINE Alu -1 312 1 405 286 97 11 chr9 73348606 73348781 -68922663 + MIR3 SINE MIR 9 198 -10 288 293 150 15 chr9 73349226 73349359 -68922085 + MER5B DNA MER1_type 23 173 -5 453 329 86 9 chr9 73351004 73351226 -68920218 - MIR SINE MIR -4 258 20 312 290 56 9 chr9 73351349 73351456 -68919988 + MIR SINE MIR 150 261 -1 250 260 73 31 chr9 73352004 73352100 -68919344 - MLT1J LTR MaLR -174 337 238 440 350 57 43 chr9 73352757 73353177 -68918267 + LTR16A LTR ERVL 16 441 -9 262 316 33 20 chr9 73354500 73354652 -68916792 + L1MC/D LINE L1 5602 5755 -2053 242 182 45 45 chr9 73354877 73354965 -68916479 + HAL1b LINE L1 1261 1348 0 1954 145 30 0 chr9 73355689 73355986 -68915458 - AluSx SINE Alu -6 306 1 46 0 0 0 chr9 73356265 73356311 -68915133 + AT_rich Low_complexity Low_complexity 1 46 0 3166 213 79 30 chr9 73356603 73357786 -68913658 + L1MB3 LINE L1 4369 5621 -559 1768 201 54 27 chr9 73357792 73358240 -68913204 + MER31B LTR ERV1 7 466 0 2667 170 77 24 chr9 73358240 73358776 -68912668 + L1MB3 LINE L1 5619 6182 -1 1044 73 0 15 chr9 73360136 73360273 -68911171 - AluSg/x SINE Alu -8 304 170 1537 210 183 11 chr9 73360342 73360780 -68910664 - L1MC4 LINE L1 -80 7962 7450 1733 166 3 43 chr9 73361563 73361888 -68909556 - AluJo SINE Alu 0 312 1 230 273 58 102 chr9 73362276 73362481 -68908963 - MER112 DNA MER1_type -64 196 1 240 293 274 6 chr9 73363107 73363271 -68908173 + Charlie8 DNA MER1_type 32 239 -2178 271 330 77 70 chr9 73363441 73363705 -68907739 + L2 LINE L2 2131 2401 -913 1841 133 0 47 chr9 73363705 73364005 -68907439 - AluSx SINE Alu -26 286 1 271 330 77 70 chr9 73364005 73364143 -68907301 + L2 LINE L2 2401 2536 -778 720 258 44 56 chr9 73364255 73364507 -68906937 - L2 LINE L2 0 3313 3065 301 264 11 11 chr9 73365811 73365898 -68905546 - MIR3 SINE MIR -23 185 99 29 47 0 0 chr9 73367120 73367163 -68904281 + AT_rich Low_complexity Low_complexity 1 43 0 573 313 26 65 chr9 73367818 73368170 -68903274 + L2 LINE L2 2262 2599 -715 8005 218 30 16 chr9 73368352 73368801 -68902643 + L1M3 LINE L1 3332 3774 -2406 2366 158 31 19 chr9 73368801 73369226 -68902218 + MSTB1 LTR MaLR 1 430 -2 8005 218 30 16 chr9 73369226 73370881 -68900563 + L1M3 LINE L1 3774 5455 -725 496 265 61 8 chr9 73371040 73371172 -68900272 - MER58B DNA MER1_type 0 341 203 848 209 211 107 chr9 73371172 73371613 -68899831 - LTR28 LTR ERV1 -533 487 1 484 311 179 22 chr9 73371750 73372107 -68899337 - L1M4 LINE L1 -2183 3963 3551 426 307 91 9 chr9 73372108 73372427 -68899017 - L1M4 LINE L1 -3140 3006 2662 2129 122 7 3 chr9 73373043 73373347 -68898097 + AluSg SINE Alu 1 305 -5 195 170 0 0 chr9 73373389 73373436 -68898008 + CT-rich Low_complexity Low_complexity 2 48 0 184 222 44 0 chr9 73373547 73373592 -68897852 + L2 LINE L2 3255 3301 -12 488 197 324 5 chr9 73373653 73373810 -68897634 - MIR SINE MIR 0 262 54 989 222 88 0 chr9 73374045 73374261 -68897183 - MIR SINE MIR -25 237 3 281 233 11 0 chr9 73377344 73377434 -68894010 + GA-rich Low_complexity Low_complexity 3 93 0 26 30 0 0 chr9 73377736 73377769 -68893675 + AT_rich Low_complexity Low_complexity 1 33 0 430 299 99 12 chr9 73377871 73378205 -68893239 + LTR50 LTR ERVL 1 453 -342 1446 260 55 17 chr9 73378207 73378623 -68892821 + ERVL LTR ERVL 3067 3498 -2266 815 292 119 23 chr9 73378780 73379020 -68892424 + ERVL LTR ERVL 4899 5115 -649 1454 144 7 85 chr9 73379020 73379291 -68892153 + AluJb SINE Alu 1 250 -62 815 292 119 23 chr9 73379291 73379605 -68891839 + ERVL LTR ERVL 5115 5506 -258 484 275 174 46 chr9 73379885 73380376 -68891068 + LTR50 LTR ERVL 1 507 -16 25 51 0 0 chr9 73380489 73380528 -68890916 + AT_rich Low_complexity Low_complexity 1 39 0 1002 181 37 9 chr9 73380672 73380887 -68890557 + L1MB7 LINE L1 5767 5987 -197 454 308 105 13 chr9 73381134 73381650 -68889794 + L1ME4a LINE L1 5343 5912 -209 301 311 66 18 chr9 73381919 73382086 -68889358 + L1ME4a LINE L1 5938 6112 -9 1395 197 81 0 chr9 73382098 73382382 -68889062 - L1MCa LINE L1 -6061 365 59 274 245 54 10 chr9 73382463 73382592 -68888852 + L1M2 LINE L1 5344 5476 -766 269 111 0 0 chr9 73382599 73382635 -68888809 - L1MCa LINE L1 -6372 54 19 2180 106 3 3 chr9 73382824 73383126 -68888318 - AluSx SINE Alu -10 302 1 1842 141 57 98 chr9 73383300 73383718 -68887726 - MSTC LTR MaLR -19 409 9 2550 46 0 0 chr9 73383753 73384057 -68887387 + AluY SINE Alu 1 304 -7 2556 135 86 11 chr9 73384058 73384592 -68886852 + L1MCb LINE L1 1105 1679 -4849 210 37 0 0 chr9 73384741 73384768 -68886676 + (CA)n Simple_repeat Simple_repeat 2 28 0 218 298 12 48 chr9 73384804 73384888 -68886556 - MIR SINE MIR -108 154 74 2508 148 38 5 chr9 73384988 73385413 -68886031 - Tigger2 DNA MER2_type 0 2718 2280 347 197 0 28 chr9 73385411 73385482 -68885962 - Tigger2 DNA MER2_type -2649 69 1 * 1236 73 6 0 chr9 73385898 73386063 -68885381 - L1PA8 LINE L1 -13 6159 5994 23 33 0 0 chr9 73386587 73386617 -68884827 + AT_rich Low_complexity Low_complexity 1 30 0 2283 97 0 0 chr9 73386862 73387161 -68884283 + AluSg SINE Alu 1 299 -11 561 189 98 15 chr9 73388063 73388195 -68883249 - MLT1B LTR MaLR 0 390 248 515 133 9 48 chr9 73388224 73388329 -68883115 - MLT1B LTR MaLR -289 101 1 371 352 119 23 chr9 73388330 73388640 -68882804 + LTR16C LTR ERVL 131 470 -21 1912 177 22 87 chr9 73388647 73389143 -68882301 + MLT1C LTR MaLR 1 464 -3 973 367 35 30 chr9 73389906 73390508 -68880936 + HERV16 LTR ERVL 817 1421 -3575 621 140 0 77 chr9 73392856 73392936 -68878508 + MER4C LTR ERV1 1 86 -578 279 0 0 0 chr9 73392936 73392967 -68878477 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 621 140 0 77 chr9 73392967 73393087 -68878357 + MER4C LTR ERV1 86 260 -404 1906 119 58 7 chr9 73393236 73393597 -68877847 - AluSg SINE Alu 0 376 1 26 30 0 0 chr9 73394441 73394474 -68876970 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr9 73394678 73394707 -68876737 + AT_rich Low_complexity Low_complexity 1 29 0 338 226 5 8 chr9 73395898 73396110 -68875334 + AluJo SINE Alu 1 274 -28 219 36 0 0 chr9 73396115 73396143 -68875301 + (TG)n Simple_repeat Simple_repeat 2 29 0 359 263 25 0 chr9 73398107 73398187 -68873257 - L2 LINE L2 -2 3311 3230 205 304 72 72 chr9 73398438 73398645 -68872799 + MIR SINE MIR 40 246 -16 269 331 55 62 chr9 73401030 73401287 -68870157 + MLT1K LTR MaLR 184 438 -150 622 75 53 11 chr9 73401458 73401552 -68869892 + MER4A LTR ERV1 1 98 -566 1691 118 18 32 chr9 73401600 73401879 -68869565 + MER4A LTR ERV1 372 646 -18 211 258 0 32 chr9 73402077 73402139 -68869305 + MIR SINE MIR 202 261 -1 2533 52 0 0 chr9 73402497 73402805 -68868639 - AluYa5 SINE Alu -3 308 1 180 0 0 0 chr9 73402805 73402825 -68868619 + (T)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr9 73402977 73402999 -68868445 + (T)n Simple_repeat Simple_repeat 1 22 0 326 280 75 19 chr9 73403022 73403129 -68868315 + L2 LINE L2 3189 3301 -12 805 129 9 161 chr9 73405330 73405547 -68865897 - MLT1B LTR MaLR -35 355 172 366 264 64 88 chr9 73406263 73406559 -68864885 - L1MC/D LINE L1 -699 5543 5255 3729 176 21 13 chr9 73407376 73407681 -68863763 - L1MC2 LINE L1 -12 6332 6031 2075 110 13 13 chr9 73407681 73407981 -68863463 - AluSg SINE Alu -10 300 1 3729 176 21 13 chr9 73407981 73408442 -68863002 - L1MC2 LINE L1 -313 6031 5560 918 127 25 25 chr9 73411089 73411246 -68860198 + BC200 scRNA scRNA 2 158 -42 227 303 30 0 chr9 73411248 73411314 -68860130 - MIR SINE MIR -142 120 53 311 306 54 18 chr9 73413352 73413463 -68857981 - MIR3 SINE MIR -21 187 73 409 324 34 123 chr9 73413573 73413956 -68857488 - L2 LINE L2 -4 3268 2920 1940 159 0 9 chr9 73414260 73414575 -68856869 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 73415315 73415338 -68856106 + AT_rich Low_complexity Low_complexity 1 23 0 365 0 16 62 chr9 73415958 73416022 -68855422 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 2346 99 0 0 chr9 73417208 73417512 -68853932 + AluSx SINE Alu 1 304 -8 237 403 26 13 chr9 73417535 73417689 -68853755 + L2 LINE L2 2571 2726 -588 182 189 244 33 chr9 73420258 73420348 -68851096 + MIR SINE MIR 91 199 -63 1551 190 156 22 chr9 73421721 73422091 -68849353 - MSTB1 LTR MaLR 0 432 1 2276 138 51 12 chr9 73422748 73423162 -68848282 - MSTB1 LTR MaLR -2 430 1 206 282 82 64 chr9 73424027 73424137 -68847307 + L2 LINE L2 3202 3313 0 267 353 26 9 chr9 73424707 73424823 -68846621 - L2 LINE L2 -3 3310 3193 209 222 19 0 chr9 73425333 73425387 -68846057 + A-rich Low_complexity Low_complexity 1 55 0 221 250 54 0 chr9 73426254 73426310 -68845134 - L2 LINE L2 -17 3296 3238 216 324 9 117 chr9 73426313 73426424 -68845020 + MIR SINE MIR 2 100 -162 * 242 293 45 28 chr9 73426395 73426524 -68844920 - MER5A DNA MER1_type -43 146 5 556 238 163 0 chr9 73426536 73426683 -68844761 - MER5A DNA MER1_type 0 189 19 583 167 12 0 chr9 73426801 73426962 -68844482 - L1PA16 LINE L1 -2 6164 5967 288 0 0 0 chr9 73428717 73428749 -68842695 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 54 0 0 chr9 73429077 73429114 -68842330 + AT_rich Low_complexity Low_complexity 1 37 0 786 186 0 6 chr9 73430550 73430706 -68840738 - L1MC/D LINE L1 -625 5617 5463 2038 97 7 28 chr9 73430711 73431036 -68840408 - AluSq SINE Alu 0 319 1 1459 243 27 33 chr9 73431038 73431527 -68839917 - L1MC/D LINE L1 -837 5309 4824 23 54 0 0 chr9 73431527 73431564 -68839880 + AT_rich Low_complexity Low_complexity 1 37 0 684 103 0 0 chr9 73431767 73431864 -68839580 + AluY SINE Alu 207 303 -8 2083 118 3 3 chr9 73432224 73432520 -68838924 - AluSx SINE Alu -11 301 6 2124 124 92 15 chr9 73533039 73533377 -68738067 - THE1B LTR MaLR 0 364 1 4626 105 2 0 chr9 73533377 73533997 -68737447 - THE1B-int LTR MaLR 0 1580 960 2075 95 105 8 chr9 73533997 73534363 -68737081 - LTR7 LTR ERV1 0 450 1 1479 120 5 0 chr9 73534363 73534572 -68736872 - THE1B-int LTR MaLR -616 964 755 6508 109 5 0 chr9 73534573 73535465 -68735979 - THE1B-int LTR MaLR -684 896 1 2136 126 45 28 chr9 73535465 73535823 -68735621 - THE1B LTR MaLR 0 364 1 2210 117 0 16 chr9 73537860 73538169 -68733275 + AluSp SINE Alu 1 304 -9 1559 171 46 21 chr9 73540121 73540201 -68731243 - MER44D DNA MER2_type -1885 606 529 204 97 0 0 chr9 73540201 73540232 -68731212 + (CA)n Simple_repeat Simple_repeat 2 32 0 1559 171 46 21 chr9 73540232 73540479 -68730965 - MER44D DNA MER2_type -1962 529 1 2172 108 51 17 chr9 73540498 73540850 -68730594 + THE1B LTR MaLR 1 364 0 27 49 0 0 chr9 73540955 73540996 -68730448 + AT_rich Low_complexity Low_complexity 1 41 0 444 156 0 0 chr9 73541318 73541395 -68730049 + MADE1 DNA Mariner 2 78 -2 348 250 139 19 chr9 73542113 73542325 -68729119 - MER106B DNA MER1_type 0 1059 3 5352 101 3 0 chr9 73545268 73546014 -68725430 + L1P LINE L1 1490 2237 -3909 3298 105 0 0 chr9 73546006 73546471 -68724973 + L1P LINE L1 3383 3847 -2299 * 3940 56 0 0 chr9 73546471 73546985 -68724459 + L1PA7 LINE L1 5651 6167 0 359 288 102 11 chr9 73547318 73547495 -68723949 + L1M4 LINE L1 4737 4929 -1217 2031 128 50 34 chr9 73547748 73548106 -68723338 - THE1B LTR MaLR 0 364 1 11619 93 3 12 chr9 73548106 73549701 -68721743 - THE1B-int LTR MaLR 0 1580 1 2053 140 42 28 chr9 73549701 73550058 -68721386 - THE1B LTR MaLR 0 364 3 2960 242 43 18 chr9 73550789 73551789 -68719655 - L1ME1 LINE L1 -7 6159 5128 234 0 0 0 chr9 73551801 73551827 -68719617 + (TA)n Simple_repeat Simple_repeat 1 26 0 2109 118 3 0 chr9 73551828 73552115 -68719329 - AluSp SINE Alu -24 289 2 571 202 54 19 chr9 73552162 73552407 -68719037 - MER39 LTR ERV1 0 729 545 962 208 102 0 chr9 73552462 73552688 -68718756 - LTR48 LTR ERV1 -338 449 201 1498 199 22 26 chr9 73552688 73553000 -68718444 + AluJo SINE Alu 2 312 0 709 154 31 6 chr9 73553002 73553164 -68718280 + GA-rich Low_complexity Low_complexity 3 168 0 713 197 191 11 chr9 73553164 73553342 -68718102 - LTR48 LTR ERV1 -572 215 6 333 109 0 0 chr9 73553367 73553422 -68718022 + (TG)n Simple_repeat Simple_repeat 2 56 0 38 0 0 0 chr9 73553483 73553521 -68717923 + AT_rich Low_complexity Low_complexity 1 38 0 2525 50 0 7 chr9 73553575 73553878 -68717566 - AluY SINE Alu -10 301 1 327 85 0 0 chr9 73553917 73553964 -68717480 + (TG)n Simple_repeat Simple_repeat 2 48 0 237 351 84 7 chr9 73554119 73554273 -68717171 - L2 LINE L2 -2919 395 230 252 282 0 14 chr9 73554379 73554450 -68716994 + MLT2E LTR ERVL 504 573 -55 21 0 0 0 chr9 73555134 73555155 -68716289 + AT_rich Low_complexity Low_complexity 1 21 0 522 30 0 0 chr9 73555236 73555302 -68716142 - MER41A LTR ERV1 -88 466 401 42 71 0 0 chr9 73555396 73555480 -68715964 + AT_rich Low_complexity Low_complexity 1 84 0 222 231 19 0 chr9 73555515 73555567 -68715877 - MIR SINE MIR -92 170 118 769 206 14 51 chr9 73556437 73556651 -68714793 - L1MB7 LINE L1 -19 6165 5960 24 0 0 0 chr9 73556864 73556888 -68714556 + AT_rich Low_complexity Low_complexity 1 24 0 749 299 41 0 chr9 73557400 73557621 -68713823 + MIR SINE MIR 16 245 -17 224 314 83 26 chr9 73557739 73557895 -68713549 - MIR SINE MIR -9 253 89 21 36 0 0 chr9 73558570 73558598 -68712846 + AT_rich Low_complexity Low_complexity 1 28 0 376 233 93 53 chr9 73558600 73558633 -68712811 - LTR33 LTR ERVL -8 513 483 2099 138 30 25 chr9 73558633 73558995 -68712449 - THE1B LTR MaLR 0 364 1 376 233 93 53 chr9 73558995 73559111 -68712333 - LTR33 LTR ERVL -38 483 358 323 363 79 17 chr9 73559195 73559435 -68712009 - MIR SINE MIR -1 261 7 436 349 43 24 chr9 73560351 73560606 -68710838 + MIR SINE MIR 2 261 -1 180 0 0 0 chr9 73561513 73561533 -68709911 + (A)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr9 73561722 73561746 -68709698 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 73561793 73561815 -68709629 + AT_rich Low_complexity Low_complexity 1 22 0 7189 109 25 49 chr9 73561856 73563117 -68708327 + Tigger3b DNA MER2_type 1 1231 0 209 200 105 57 chr9 73564230 73564335 -68707109 - MER5C DNA MER1_type -122 202 93 3566 235 62 63 chr9 73565130 73567885 -68703559 - L1ME1 LINE L1 -63 6103 3366 369 145 0 0 chr9 73567914 73567976 -68703468 + MSTB LTR MaLR 240 301 -125 476 274 18 0 chr9 73568015 73568128 -68703316 - MER58B DNA MER1_type 0 341 227 660 234 39 71 chr9 73568188 73568598 -68702846 - L1ME1 LINE L1 -2803 3343 2947 * 986 277 83 11 chr9 73568577 73569121 -68702323 - L1M1 LINE L1 -5445 1661 10 2146 211 25 4 chr9 73569140 73569864 -68701580 - L1M4 LINE L1 -569 6103 5365 1808 180 30 32 chr9 73569864 73569897 -68701547 + MSTB LTR MaLR 1 33 -393 2214 107 0 7 chr9 73569897 73570196 -68701248 - AluSg SINE Alu -13 297 1 1808 180 30 32 chr9 73570196 73570535 -68700909 + MSTB LTR MaLR 33 372 -54 1828 177 35 14 chr9 73570540 73570907 -68700537 - THE1C LTR MaLR 0 375 1 8831 132 35 39 chr9 73570907 73572490 -68698954 - THE1C-int LTR MaLR 0 1580 4 1490 158 57 32 chr9 73572493 73572809 -68698635 - THE1C LTR MaLR 0 375 52 303 154 19 0 chr9 73572803 73572855 -68698589 + MSTB LTR MaLR 376 428 -4 * 688 299 63 23 chr9 73572859 73573160 -68698284 - L1M4 LINE L1 -1275 5369 5057 15728 163 36 18 chr9 73573176 73577338 -68694106 - L1MA2 LINE L1 0 7723 3380 2791 7 0 3 chr9 73577338 73577648 -68693796 - AluYa5 SINE Alu -2 309 1 15728 163 36 18 chr9 73577648 73580371 -68691073 - L1MA2 LINE L1 -4343 3380 708 505 203 25 25 chr9 73580368 73580486 -68690958 - L1MA2 LINE L1 -7431 134 17 * 3599 274 89 23 chr9 73580486 73580805 -68690639 - L1M4 LINE L1 -1577 5067 4771 236 30 30 0 chr9 73580805 73580838 -68690606 + (TG)n Simple_repeat Simple_repeat 2 35 0 3599 274 89 23 chr9 73580838 73582279 -68689165 - L1M4 LINE L1 -1873 4771 3190 1260 233 22 6 chr9 73582267 73582589 -68688855 - L1M4 LINE L1 -4956 1690 1364 * 542 317 40 24 chr9 73582955 73583204 -68688240 - L1M4 LINE L1 -6289 253 1 1879 227 75 11 chr9 73583215 73583919 -68687525 - L1MEc LINE L1 -3175 3040 2292 437 291 28 0 chr9 73583926 73584108 -68687336 - L1MEc LINE L1 -4106 2290 2104 467 385 37 16 chr9 73584281 73584655 -68686789 - L1MEc LINE L1 -5835 561 180 3036 160 16 2 chr9 73584855 73585360 -68686084 + MER41E LTR ERV1 1 512 0 282 309 0 0 chr9 73585721 73585805 -68685639 - MIR SINE MIR -10 252 169 21 0 0 0 chr9 73586793 73586814 -68684630 + AT_rich Low_complexity Low_complexity 1 21 0 6076 158 9 15 chr9 73586814 73588709 -68682735 - L1PB2 LINE L1 -2 6149 4270 223 83 21 21 chr9 73589431 73589479 -68681965 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 1168 185 86 14 chr9 73589633 73589925 -68681519 - MER33 DNA MER1_type -11 313 1 935 262 43 23 chr9 73591984 73592240 -68679204 - MIR SINE MIR 0 262 2 1031 226 9 9 chr9 73593562 73593779 -68677665 + MER20 DNA MER1_type 2 218 -1 288 316 173 6 chr9 73594028 73594196 -68677248 - L2 LINE L2 -966 2348 2153 230 0 0 32 chr9 73596552 73596583 -68674861 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 258 292 0 0 chr9 73596879 73596944 -68674500 + CT-rich Low_complexity Low_complexity 3 67 0 543 320 68 5 chr9 73596982 73597204 -68674240 + MIR SINE MIR 3 238 -24 21 36 0 0 chr9 73598618 73598646 -68672798 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 73598949 73598973 -68672471 + AT_rich Low_complexity Low_complexity 1 24 0 1735 273 85 20 chr9 73599349 73599950 -68671494 + L1MEc LINE L1 109 748 -5648 * 3866 193 39 36 chr9 73599947 73601274 -68670170 + L1MA9 LINE L1 4848 6290 -22 1447 227 95 8 chr9 73601286 73601793 -68669651 + L1MEc LINE L1 747 1297 -5099 1505 296 64 37 chr9 73601819 73602828 -68668616 - L1MEc LINE L1 -5341 1055 19 24 0 0 0 chr9 73603187 73603211 -68668233 + AT_rich Low_complexity Low_complexity 1 24 0 297 0 0 0 chr9 73603430 73603463 -68667981 + (CA)n Simple_repeat Simple_repeat 2 34 0 295 207 8 174 chr9 73603666 73603787 -68667657 - MER5B DNA MER1_type 0 178 78 465 300 144 0 chr9 73603839 73603999 -68667445 + MER5A DNA MER1_type 2 184 -5 223 402 8 8 chr9 73604095 73604217 -68667227 + MER5A DNA MER1_type 35 156 -33 386 385 38 38 chr9 73605527 73606115 -68665329 - L2 LINE L2 -2 3311 2725 799 259 97 77 chr9 73606115 73607570 -68663874 + L1MC5 LINE L1 5704 7187 -774 534 203 36 124 chr9 73607759 73608089 -68663355 + L1MC5 LINE L1 7260 7560 -401 457 244 86 81 chr9 73608130 73608364 -68663080 + L1MC5 LINE L1 7672 7906 -55 957 299 64 46 chr9 73608440 73609006 -68662438 - L2 LINE L2 -649 2665 2090 24 0 0 0 chr9 73610531 73610555 -68660889 + AT_rich Low_complexity Low_complexity 1 24 0 2037 129 0 3 chr9 73611750 73612036 -68659408 - AluSx SINE Alu -27 285 1 27 0 0 0 chr9 73612063 73612090 -68659354 + AT_rich Low_complexity Low_complexity 1 27 0 4908 35 0 12 chr9 73612346 73612947 -68658497 - L1PA5 LINE L1 -1 6153 5560 336 271 81 86 chr9 73613150 73613522 -68657922 + L1ME4a LINE L1 5545 5914 -207 258 331 58 13 chr9 73614094 73614248 -68657196 - L1ME LINE L1 -515 5649 5489 5067 78 2 66 chr9 73614304 73615091 -68656353 - L1PA8 LINE L1 0 6172 5436 708 36 0 0 chr9 73615751 73615835 -68655609 - L1P LINE L1 -1897 4249 4166 2456 40 0 0 chr9 73615835 73616191 -68655253 + L1PA5 LINE L1 5852 6154 0 831 271 32 89 chr9 73616807 73617090 -68654354 + L1MC4a LINE L1 6366 6536 -1272 1841 140 0 3 chr9 73617090 73617395 -68654049 + AluJb SINE Alu 1 304 0 831 271 32 89 chr9 73617395 73617459 -68653985 + L1MC4a LINE L1 6536 6602 -1206 2332 85 3 0 chr9 73617536 73617831 -68653613 + AluSx SINE Alu 1 296 -16 37 0 0 0 chr9 73618630 73618667 -68652777 + AT_rich Low_complexity Low_complexity 1 37 0 209 274 92 105 chr9 73619731 73619884 -68651560 + L2 LINE L2 3159 3309 -4 879 150 7 13 chr9 73620149 73620302 -68651142 + MLT1A1 LTR MaLR 1 152 -213 11099 202 34 32 chr9 73620325 73623165 -68648279 + L1MA9 LINE L1 2153 4997 -1149 4153 158 28 1 chr9 73623286 73624013 -68647431 + L1MA9 LINE L1 5307 6052 -260 751 273 20 5 chr9 73624050 73624248 -68647196 + MLT1A1 LTR MaLR 172 372 -2 250 213 0 0 chr9 73624788 73624835 -68646609 - L1 LINE L1 -795 5351 5305 230 368 96 24 chr9 73625771 73625896 -68645548 - L2 LINE L2 -12 3260 3127 21 36 0 0 chr9 73625983 73626011 -68645433 + AT_rich Low_complexity Low_complexity 1 28 0 273 213 154 89 chr9 73626669 73626750 -68644694 - MLT1J LTR MaLR -31 480 406 3510 231 52 40 chr9 73626750 73627696 -68643748 + MER45B DNA AcHobo 5 965 -616 2272 72 0 7 chr9 73627696 73628000 -68643444 - AluY SINE Alu -9 302 1 3510 231 52 40 chr9 73628000 73628077 -68643367 + MER45B DNA AcHobo 965 1040 0 273 213 154 89 chr9 73628077 73628164 -68643280 - MLT1J LTR MaLR -105 406 301 229 296 288 15 chr9 73628678 73628810 -68642634 + MIR SINE MIR 74 241 -21 21 0 0 0 chr9 73629294 73629315 -68642129 + AT_rich Low_complexity Low_complexity 1 21 0 389 274 20 17 chr9 73629385 73629508 -68641936 - MIR SINE MIR -62 146 50 209 262 117 21 chr9 73630020 73630165 -68641279 - MIR SINE MIR -38 224 66 2570 55 0 0 chr9 73630311 73630622 -68640822 + AluY SINE Alu 1 311 0 2095 72 0 0 chr9 73630683 73630962 -68640482 + L1PA5 LINE L1 5875 6153 -1 23 65 0 39 chr9 73631025 73631102 -68640342 + AT_rich Low_complexity Low_complexity 1 74 0 393 309 35 73 chr9 73631268 73631585 -68639859 - L1MC/D LINE L1 -2007 5801 5497 2714 233 67 24 chr9 73631685 73632408 -68639036 - L1MB3 LINE L1 -2 6897 6134 1791 136 0 4 chr9 73632408 73632673 -68638771 - AluSx SINE Alu 0 312 49 2714 233 67 24 chr9 73632673 73632790 -68638654 - L1MB3 LINE L1 -765 6134 6024 8761 203 31 17 chr9 73632936 73638704 -68632740 - L1MB3 LINE L1 -1900 4962 3 187 390 9 19 chr9 73638793 73638898 -68632546 - MIR SINE MIR -62 146 43 238 299 28 90 chr9 73639363 73639507 -68631937 - MIR SINE MIR -72 190 56 207 206 32 16 chr9 73639785 73639848 -68631596 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr9 73640202 73640232 -68631212 + AT_rich Low_complexity Low_complexity 1 30 0 1452 201 37 70 chr9 73640698 73641101 -68630343 + MLT1B LTR MaLR 1 390 0 3817 191 32 21 chr9 73641322 73642370 -68629074 + L1MB2 LINE L1 4577 5693 -478 2423 143 10 0 chr9 73642370 73642756 -68628688 + MLT1B LTR MaLR 1 390 0 3817 191 32 21 chr9 73642756 73643241 -68628203 + L1MB2 LINE L1 5693 6171 0 1170 160 35 31 chr9 73643248 73643279 -68628165 + L1MA4 LINE L1 6039 6068 -232 453 143 13 0 chr9 73643279 73643356 -68628088 - MADE1 DNA Mariner -2 78 1 1170 160 35 31 chr9 73643356 73643580 -68627864 + L1MA4 LINE L1 6068 6295 -5 677 222 33 0 chr9 73643712 73643892 -68627552 - MER53 DNA DNA 0 189 4 27 0 0 0 chr9 73643912 73643939 -68627505 + AT_rich Low_complexity Low_complexity 1 27 0 183 139 0 0 chr9 73644266 73644302 -68627142 + (CA)n Simple_repeat Simple_repeat 2 37 0 273 248 215 41 chr9 73644470 73644591 -68626853 + MIR SINE MIR 65 206 -56 857 213 12 0 chr9 73644779 73644948 -68626496 + FRAM SINE Alu 3 173 -3 22 70 0 0 chr9 73645336 73645379 -68626065 + AT_rich Low_complexity Low_complexity 1 43 0 309 270 147 60 chr9 73645765 73646050 -68625394 + L1MC/D LINE L1 5255 5564 -2431 181 225 0 42 chr9 73646262 73646333 -68625111 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 1227 253 24 40 chr9 73647253 73647633 -68623811 + MLT1A2 LTR MaLR 1 374 0 272 267 23 122 chr9 73648509 73648640 -68622804 + MER90 LTR ERV1 489 606 -8 1690 194 46 0 chr9 73648896 73649225 -68622219 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr9 73649299 73649320 -68622124 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 73649421 73649446 -68621998 + AT_rich Low_complexity Low_complexity 1 25 0 1401 144 0 0 chr9 73649508 73649710 -68621734 - Tigger3(Golem) DNA MER2_type 0 3038 2837 488 230 0 44 chr9 73649707 73649820 -68621624 - Tigger3(Golem) DNA MER2_type -2886 143 36 * 21 82 0 0 chr9 73650067 73650116 -68621328 + AT_rich Low_complexity Low_complexity 1 49 0 359 264 11 11 chr9 73650589 73650680 -68620764 + MIR SINE MIR 62 152 -110 1218 220 33 63 chr9 73652305 73652669 -68618775 + MLT1B LTR MaLR 22 374 -16 351 289 132 0 chr9 73653115 73653236 -68618208 + L3 LINE CR1 1326 1462 -115 21 0 0 0 chr9 73653880 73653901 -68617543 + AT_rich Low_complexity Low_complexity 1 21 0 416 324 30 31 chr9 73654200 73654455 -68616989 + MLT1I LTR MaLR 54 279 -130 2514 244 175 7 chr9 73654792 73655569 -68615875 + L1MC4a LINE L1 16 995 -5545 508 262 50 3 chr9 73655571 73655763 -68615681 + L1MC4a LINE L1 1359 1562 -4978 4642 252 58 44 chr9 73655785 73657741 -68613703 + L1MC4a LINE L1 2663 4646 -1894 22 35 0 0 chr9 73658655 73658684 -68612760 + AT_rich Low_complexity Low_complexity 1 29 0 210 37 0 0 chr9 73658904 73658931 -68612513 + (GA)n Simple_repeat Simple_repeat 1 27 0 288 167 35 114 chr9 73658937 73659051 -68612393 + L1MC4 LINE L1 7933 8037 -5 34 42 0 0 chr9 73659829 73659877 -68611567 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr9 73661097 73661125 -68610319 + AT_rich Low_complexity Low_complexity 1 28 0 898 306 58 26 chr9 73663567 73664064 -68607380 + L1MC4a LINE L1 5893 6405 -1797 2129 251 72 33 chr9 73664161 73664955 -68606489 - L1MC4a LINE L1 -36 7772 6948 499 205 5 32 chr9 73664976 73665161 -68606283 + CT-rich Low_complexity Low_complexity 1 180 0 785 159 0 23 chr9 73665220 73665352 -68606092 + FLAM_C SINE Alu 1 129 -14 251 279 125 0 chr9 73665358 73665462 -68605982 - L1MCb LINE L1 -4244 2320 2204 447 157 0 11 chr9 73665503 73665592 -68605852 - L1MCb LINE L1 -4467 2097 2010 322 73 0 0 chr9 73665592 73665633 -68605811 - 5S rRNA rRNA -79 42 2 2855 237 49 18 chr9 73665633 73666202 -68605242 - L1MCb LINE L1 -4541 2023 1473 735 52 0 0 chr9 73666202 73666298 -68605146 + (CTATT)n Simple_repeat Simple_repeat 5 100 0 2855 237 49 18 chr9 73666298 73667057 -68604387 - L1MCb LINE L1 -5091 1473 558 2711 182 27 44 chr9 73667119 73667668 -68603776 - MER44D DNA MER2_type 0 605 11 691 313 70 44 chr9 73667720 73668266 -68603178 - L1MCb LINE L1 -5483 562 3 521 192 108 15 chr9 73668290 73668420 -68603024 - L1MD3 LINE L1 -968 7027 6886 * 1041 200 44 20 chr9 73668413 73668663 -68602781 - L1MC4a LINE L1 -1299 6509 6254 * 1325 267 59 8 chr9 73668658 73669229 -68602215 - L1MCc LINE L1 -4887 1536 1083 365 153 14 0 chr9 73669396 73669468 -68601976 + CT-rich Low_complexity Low_complexity 1 73 0 1675 117 19 19 chr9 73669468 73669724 -68601720 - AluSq SINE Alu -15 298 43 485 80 45 0 chr9 73669747 73669835 -68601609 + GA-rich Low_complexity Low_complexity 2 93 0 24 0 0 0 chr9 73670760 73670784 -68600660 + AT_rich Low_complexity Low_complexity 1 24 0 2268 98 0 0 chr9 73671650 73671945 -68599499 - AluSc SINE Alu -14 295 1 363 111 0 0 chr9 73671948 73672002 -68599442 + MADE1 DNA Mariner 27 80 0 387 298 99 28 chr9 73672804 73672945 -68598499 + MIR SINE MIR 9 159 -103 3410 179 79 10 chr9 73673148 73673834 -68597610 + MER44D DNA MER2_type 1 605 0 1898 212 100 33 chr9 73674265 73674846 -68596598 + L1MC4 LINE L1 7109 7728 -314 219 238 63 0 chr9 73674875 73674938 -68596506 + MIR SINE MIR 137 203 -59 240 245 82 10 chr9 73675072 73675170 -68596274 - MER46C DNA MER2_type -148 190 86 369 62 0 0 chr9 73675278 73675326 -68596118 + (ATG)n Simple_repeat Simple_repeat 3 50 0 2364 81 0 0 chr9 73675352 73675647 -68595797 + AluSc SINE Alu 1 295 -14 589 269 38 25 chr9 73676285 73676445 -68594999 - L2 LINE L2 0 3313 3152 1614 175 97 24 chr9 73676453 73676917 -68594527 - LTR54B LTR ERV1 0 498 1 1937 232 105 64 chr9 73676938 73677756 -68593688 - MER21B LTR ERV1 -11 852 1 330 26 0 0 chr9 73678023 73678062 -68593382 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 71 0 0 chr9 73678191 73678233 -68593211 + AT_rich Low_complexity Low_complexity 1 42 0 969 98 0 0 chr9 73679486 73679609 -68591835 - AluSq/x SINE Alu -189 123 1 426 330 78 5 chr9 73680108 73680299 -68591145 - MIR SINE MIR -56 206 2 1013 263 119 36 chr9 73680449 73680735 -68590709 - L1MDa LINE L1 -4764 1776 1515 3015 75 114 2 chr9 73680735 73681172 -68590272 + LTR19A LTR ERV1 1 486 0 1013 263 119 36 chr9 73681172 73681608 -68589836 - L1MDa LINE L1 -5025 1515 994 555 289 115 26 chr9 73681733 73681922 -68589522 - L1MDa LINE L1 -5771 759 537 207 0 0 0 chr9 73681922 73681945 -68589499 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 555 289 115 26 chr9 73681945 73682025 -68589419 - L1MDa LINE L1 -5993 537 466 1488 261 108 41 chr9 73682077 73682764 -68588680 - L1MEc LINE L1 -3159 3056 2416 1233 223 8 4 chr9 73682764 73683002 -68588442 - MER8 DNA MER2_type 0 239 1 1488 261 108 41 chr9 73683002 73683680 -68587764 - L1MEc LINE L1 -3799 2416 1639 3006 237 45 33 chr9 73683697 73684652 -68586792 - L1ME1 LINE L1 -5 6230 5267 1280 163 23 5 chr9 73684654 73684869 -68586575 - AluJb SINE Alu -7 305 87 1757 258 32 18 chr9 73684919 73685516 -68585928 - L1ME1 LINE L1 -1018 5197 4593 492 342 42 37 chr9 73685735 73686139 -68585305 - L1ME1 LINE L1 -5946 450 45 507 257 78 39 chr9 73686348 73686734 -68584710 - MLT1J2 LTR MaLR -2 448 1 2023 133 128 13 chr9 73687907 73688289 -68583155 + MSTA LTR MaLR 3 428 0 270 261 109 7 chr9 73688340 73688478 -68582966 - L1M4 LINE L1 -2098 4048 3897 1876 156 7 0 chr9 73688519 73688814 -68582630 - AluSx SINE Alu -15 297 1 21 36 0 0 chr9 73689780 73689808 -68581636 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr9 73689949 73689976 -68581468 + (TG)n Simple_repeat Simple_repeat 2 28 0 1400 199 21 97 chr9 73690013 73690435 -68581009 + MLT1B LTR MaLR 1 390 0 337 611 11 0 chr9 73690548 73690723 -68580721 + polypyrimidine Low_complexity Low_complexity 4 180 0 303 246 8 17 chr9 73690717 73690835 -68580609 + CT-rich Low_complexity Low_complexity 2 118 0 * 186 287 84 56 chr9 73690982 73691125 -68580319 + L2 LINE L2 3167 3313 0 369 0 0 0 chr9 73693388 73693429 -68578015 + (TA)n Simple_repeat Simple_repeat 1 41 0 185 360 0 0 chr9 73693807 73693857 -68577587 - L2 LINE L2 -4 3268 3219 2217 110 0 3 chr9 73694639 73694947 -68576497 + AluSc SINE Alu 1 307 -2 21 0 0 0 chr9 73697295 73697316 -68574128 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr9 73697432 73697483 -68573961 + AT_rich Low_complexity Low_complexity 1 51 0 4453 122 50 3 chr9 73697595 73698300 -68573144 + Tigger4(Zombi) DNA MER2_type 1338 2075 -656 3062 122 8 12 chr9 73698300 73698782 -68572662 + Tigger4(Zombi) DNA MER2_type 2252 2731 0 204 67 0 0 chr9 73699426 73699456 -68571988 + (TG)n Simple_repeat Simple_repeat 1 30 0 628 189 0 18 chr9 73699884 73699995 -68571449 + FLAM_C SINE Alu 3 111 -32 2289 98 38 0 chr9 73700088 73700435 -68571009 - L1PB1 LINE L1 -1 6150 5791 268 208 0 62 chr9 73700449 73700545 -68570899 - L1MC4 LINE L1 -1339 6703 6614 228 234 0 43 chr9 73700465 73700559 -68570885 + L1MC4 LINE L1 6614 6703 -1339 * 3588 119 24 14 chr9 73700557 73701270 -68570174 - L1P5 LINE L1 -361 5790 5069 * 15867 175 58 9 chr9 73701265 73706982 -68564462 - L1PBa LINE L1 -865 5997 1 2197 167 74 0 chr9 73707000 73707390 -68564054 - MSTA LTR MaLR -9 419 1 24 0 0 0 chr9 73707412 73707436 -68564008 + AT_rich Low_complexity Low_complexity 1 24 0 1255 221 29 52 chr9 73707581 73707889 -68563555 - AluJb SINE Alu -10 302 2 25 0 0 0 chr9 73708230 73708255 -68563189 + AT_rich Low_complexity Low_complexity 1 25 0 1555 279 55 47 chr9 73708351 73708855 -68562589 - MLT1E LTR MaLR -8 585 74 1473 241 45 11 chr9 73708855 73709237 -68562207 - MLT2C1 LTR ERVL -2 395 1 1555 279 55 47 chr9 73709237 73709310 -68562134 - MLT1E LTR MaLR -519 74 3 32 0 0 0 chr9 73709324 73709356 -68562088 + AT_rich Low_complexity Low_complexity 1 32 0 192 40 0 0 chr9 73709662 73709687 -68561757 + (CCCCCT)n Simple_repeat Simple_repeat 3 27 0 21 0 0 0 chr9 73711705 73711726 -68559718 + AT_rich Low_complexity Low_complexity 1 21 0 201 322 0 0 chr9 73712719 73712778 -68558666 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 236 222 0 19 chr9 73713015 73713069 -68558375 - L1MC/D LINE L1 -2163 5645 5593 495 286 122 17 chr9 73713184 73713907 -68557537 + L1M4c LINE L1 2298 3108 -3274 2531 247 32 44 chr9 73714029 73715284 -68556160 - L1ME1 LINE L1 -151 6015 4768 1806 146 16 36 chr9 73715284 73715632 -68555812 - MER4A LTR ERV1 0 664 262 535 151 0 66 chr9 73715632 73715738 -68555706 - MER4A LTR ERV1 -565 99 1 1493 232 55 55 chr9 73715738 73716319 -68555125 - L1ME1 LINE L1 -1375 4771 4188 186 43 0 0 chr9 73716319 73716342 -68555102 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1493 232 55 55 chr9 73716342 73716399 -68555045 - L1ME1 LINE L1 -1957 4189 4133 668 211 0 15 chr9 73716434 73716567 -68554877 + L1ME3A LINE L1 18 148 -6392 988 285 90 40 chr9 73716580 73716956 -68554488 + L1ME3A LINE L1 202 596 -5944 296 208 13 13 chr9 73716988 73717065 -68554379 + L1MD2 LINE L1 6058 6134 -225 486 263 40 13 chr9 73717070 73717222 -68554222 + L1MD2 LINE L1 6191 6346 -13 799 221 100 35 chr9 73717249 73717480 -68553964 - MSTC LTR MaLR 0 428 183 2271 100 0 10 chr9 73717542 73717851 -68553593 + AluSc SINE Alu 1 306 -3 321 188 0 14 chr9 73717860 73717929 -68553515 - MSTC LTR MaLR -247 127 60 485 300 40 15 chr9 73717970 73718373 -68553071 + L1ME3A LINE L1 3283 3695 -2845 505 298 80 69 chr9 73718727 73719261 -68552183 + L1ME3A LINE L1 3915 4442 -2098 582 318 81 7 chr9 73719331 73719737 -68551707 + L1ME3A LINE L1 4467 4902 -1638 688 221 57 13 chr9 73719752 73719910 -68551534 + MER5A DNA MER1_type 25 189 0 552 282 115 4 chr9 73719944 73720178 -68551266 + L1ME3A LINE L1 6097 6356 -208 432 303 80 54 chr9 73720336 73720814 -68550630 + HAL1 LINE L1 1238 1727 -780 195 42 0 0 chr9 73720882 73720906 -68550538 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 198 422 9 9 chr9 73721344 73721460 -68549984 - MIR3 SINE MIR -50 158 43 252 203 0 31 chr9 73721881 73721945 -68549499 - MIR SINE MIR -119 143 82 1435 229 52 17 chr9 73722002 73722421 -68549023 + MER63B DNA MER1_type 1 434 -2 1637 172 29 16 chr9 73722522 73722830 -68548614 + AluJo SINE Alu 1 312 0 276 379 20 39 chr9 73723945 73724098 -68547346 + L3 LINE CR1 1370 1519 -58 202 363 102 32 chr9 73724346 73724503 -68546941 + MIR3 SINE MIR 30 197 -11 210 302 32 0 chr9 73726658 73726721 -68544723 + MIR SINE MIR 34 98 -110 25 83 0 0 chr9 73726878 73726938 -68544506 + AT_rich Low_complexity Low_complexity 1 60 0 16257 133 26 14 chr9 73727128 73729282 -68542162 - Tigger2 DNA MER2_type 0 2718 523 1778 168 0 3 chr9 73729282 73729590 -68541854 - AluJo SINE Alu 0 307 1 16257 133 26 14 chr9 73729590 73730117 -68541327 - Tigger2 DNA MER2_type -2195 523 4 796 102 86 0 chr9 73730480 73730608 -68540836 - MER85 DNA T2_type 0 139 1 301 364 23 8 chr9 73730820 73730949 -68540495 + MIR3 SINE MIR 14 144 -64 238 224 17 0 chr9 73731075 73731133 -68540311 + GA-rich Low_complexity Low_complexity 4 62 0 231 330 66 9 chr9 73731471 73731577 -68539867 + MIR SINE MIR 77 188 -74 1323 139 0 27 chr9 73731951 73732208 -68539236 - AluSg/x SINE Alu 0 346 96 738 317 94 30 chr9 73732917 73733248 -68538196 + MER115 DNA AcHobo 100 451 -242 1614 183 79 101 chr9 73733403 73733665 -68537779 + LTR55 LTR ERV 1 267 -281 2372 113 21 16 chr9 73733665 73734038 -68537406 + THE1C LTR MaLR 1 375 0 1614 183 79 101 chr9 73734038 73734332 -68537112 + LTR55 LTR ERV 267 545 -3 1270 245 41 10 chr9 73734384 73734698 -68536746 + MER58B DNA MER1_type 7 330 -11 1560 202 0 17 chr9 73734835 73735122 -68536322 + AluJb SINE Alu 1 282 -30 657 0 0 0 chr9 73735124 73735197 -68536247 + (AATAG)n Simple_repeat Simple_repeat 3 75 0 252 276 0 0 chr9 73736616 73736692 -68534752 - L1M4 LINE L1 -867 5279 5204 1181 267 106 71 chr9 73737129 73737829 -68533615 - L1MC4 LINE L1 -615 7427 6704 1014 292 81 41 chr9 73737861 73738303 -68533141 + MLT1E LTR MaLR 15 474 -119 2134 179 7 70 chr9 73739110 73739569 -68531875 + LOR1b LTR ERV1 1 430 -31 2412 172 6 40 chr9 73739625 73740102 -68531342 + LOR1b LTR ERV1 1 461 0 2059 195 101 54 chr9 73740476 73741091 -68530353 - LTR48B LTR ERV1 0 644 1 48 32 0 0 chr9 73741091 73741153 -68530291 + AT_rich Low_complexity Low_complexity 1 62 0 1566 297 72 10 chr9 73741191 73741387 -68530057 + L1ME1 LINE L1 2650 2832 -3314 13472 141 36 14 chr9 73741387 73743236 -68528208 + Tigger1 DNA MER2_type 2 1916 -502 1822 157 7 0 chr9 73743236 73743522 -68527922 + AluSx SINE Alu 1 288 -24 13472 141 36 14 chr9 73743522 73744037 -68527407 + Tigger1 DNA MER2_type 1916 2418 0 1566 297 72 10 chr9 73744037 73744907 -68526537 + L1ME1 LINE L1 2832 3782 -2364 288 243 28 108 chr9 73744981 73745195 -68526249 + L1ME1 LINE L1 5010 5206 -940 232 290 39 45 chr9 73745183 73745338 -68526106 + L1ME1 LINE L1 6009 6162 -4 * 5031 147 15 26 chr9 73745994 73747725 -68523719 - L1PA15 LINE L1 -1 6164 4419 1862 283 59 10 chr9 73747941 73748822 -68522622 + L1M4 LINE L1 2744 3667 -2479 23 108 0 0 chr9 73748846 73748939 -68522505 + AT_rich Low_complexity Low_complexity 1 93 0 204 286 336 0 chr9 73749404 73749523 -68521921 + MER5A DNA MER1_type 29 187 -2 595 367 38 42 chr9 73750571 73751067 -68520377 + L3 LINE CR1 237 730 -847 23 33 0 0 chr9 73751629 73751659 -68519785 + AT_rich Low_complexity Low_complexity 1 30 0 297 360 33 13 chr9 73754547 73754700 -68516744 - MIR SINE MIR -7 255 100 879 258 126 9 chr9 73755527 73755889 -68515555 - L1MC4 LINE L1 -136 7677 7282 1821 118 37 47 chr9 73756087 73756384 -68515060 - AluSg SINE Alu -16 294 1 2784 216 101 24 chr9 73756420 73757386 -68514058 - L1MB7 LINE L1 -36 6148 5108 1661 249 60 39 chr9 73757373 73757912 -68513532 - L1MB7 LINE L1 -3034 3112 2551 * 4253 62 0 0 chr9 73757912 73758446 -68512998 + L1PA7 LINE L1 5614 6147 -7 1661 249 60 39 chr9 73758446 73758658 -68512786 - L1MB7 LINE L1 -3595 2551 2345 1663 137 8 15 chr9 73758884 73759146 -68512298 + AluSx SINE Alu 41 300 -12 2070 115 7 3 chr9 73759167 73759462 -68511982 + AluSg SINE Alu 1 296 -14 787 160 0 0 chr9 73759846 73759977 -68511467 - FLAM_C SINE Alu -2 131 1 21 0 0 0 chr9 73760131 73760152 -68511292 + AT_rich Low_complexity Low_complexity 1 21 0 1929 198 57 112 chr9 73762096 73762517 -68508927 + LTR8A LTR ERV1 3 228 -375 1829 184 0 3 chr9 73762517 73762811 -68508633 - AluJo SINE Alu -17 295 3 1929 198 57 112 chr9 73762811 73763140 -68508304 + LTR8A LTR ERV1 228 574 -29 444 256 140 19 chr9 73763229 73763532 -68507912 - LTR16C LTR ERVL -12 479 98 345 323 150 3 chr9 73763843 73764156 -68507288 + L1ME3A LINE L1 2424 2782 -3364 1135 186 144 0 chr9 73764242 73764506 -68506938 - MER7A DNA MER2_type -44 302 3 2408 127 35 28 chr9 73765148 73765573 -68505871 + MSTA LTR MaLR 1 428 0 289 140 0 0 chr9 73766615 73766665 -68504779 + Alu SINE Alu 246 295 -5 421 284 14 28 chr9 73767666 73767877 -68503567 + L1ME3A LINE L1 4887 5094 -1052 492 301 11 11 chr9 73767980 73768156 -68503288 + LTR16A1 LTR ERVL 282 457 0 889 273 111 46 chr9 73768174 73768735 -68502709 + L1ME3A LINE L1 5391 5987 -183 2302 128 41 22 chr9 73768771 73769184 -68502260 + MSTA LTR MaLR 1 421 -7 314 222 76 49 chr9 73769185 73769329 -68502115 + L1ME3A LINE L1 6015 6162 -8 21 36 0 0 chr9 73770305 73770333 -68501111 + AT_rich Low_complexity Low_complexity 1 28 0 525 361 62 34 chr9 73770386 73770821 -68500623 + ERVL LTR ERVL 3366 3828 -1936 2029 165 5 16 chr9 73770821 73771190 -68500254 + MER47A DNA MER2_type 2 366 0 525 361 62 34 chr9 73771190 73771410 -68500034 + ERVL LTR ERVL 3828 4040 -1724 724 375 34 13 chr9 73771464 73771936 -68499508 + ERVL LTR ERVL 4119 4600 -1054 257 256 13 13 chr9 73773166 73773244 -68498200 + LTR16C LTR ERVL 414 491 0 1638 272 52 45 chr9 73774133 73774751 -68496693 + MLT2E LTR ERVL 1 622 -6 186 184 13 92 chr9 73774789 73774865 -68496579 - MIR SINE MIR -11 251 182 1623 196 7 0 chr9 73776178 73776488 -68494956 - AluJb SINE Alu 0 312 1 269 143 0 16 chr9 73777020 73777083 -68494361 + (TTA)n Simple_repeat Simple_repeat 1 62 0 202 250 0 0 chr9 73777138 73777186 -68494258 - MER91B DNA MER1_type -138 52 5 379 360 46 20 chr9 73777199 73777396 -68494048 - MIR SINE MIR -52 210 9 324 275 108 0 chr9 73778013 73778133 -68493311 + L1MD3 LINE L1 7862 7994 -1 26 30 0 0 chr9 73779230 73779263 -68492181 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr9 73779397 73779433 -68492011 + AT_rich Low_complexity Low_complexity 1 36 0 290 328 94 8 chr9 73779728 73779856 -68491588 - MIR SINE MIR -100 162 24 185 307 105 9 chr9 73780785 73780828 -68490616 + MER5B DNA MER1_type 7 44 -134 276 77 0 0 chr9 73780828 73780867 -68490577 + (CA)n Simple_repeat Simple_repeat 2 40 0 185 307 105 9 chr9 73780867 73780937 -68490507 + MER5B DNA MER1_type 44 131 -47 2292 63 9 35 chr9 73781081 73781400 -68490044 - AluY SINE Alu 0 311 1 181 359 0 0 chr9 73781987 73782051 -68489393 + L2 LINE L2 3153 3216 -56 2225 102 0 10 chr9 73782276 73782579 -68488865 - AluSq SINE Alu 0 313 14 198 208 0 0 chr9 73785018 73785066 -68486378 + (CA)n Simple_repeat Simple_repeat 2 49 0 227 157 20 0 chr9 73785653 73785704 -68485740 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr9 73787100 73787121 -68484323 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1413 170 74 33 chr9 73787123 73787297 -68484147 - AluJo SINE Alu -30 282 92 5060 24 0 3 chr9 73787297 73787886 -68483558 - L1PA3 LINE L1 -3 6152 5566 1413 170 74 33 chr9 73787886 73787982 -68483462 - AluJo SINE Alu -220 92 1 564 129 17 9 chr9 73788253 73788369 -68483075 + CT-rich Low_complexity Low_complexity 1 117 0 23 0 0 0 chr9 73788525 73788548 -68482896 + AT_rich Low_complexity Low_complexity 1 23 0 1030 199 69 8 chr9 73788736 73788997 -68482447 - LTR48B LTR ERV1 -2 642 366 1281 183 0 0 chr9 73789072 73789274 -68482170 + AluJb SINE Alu 111 312 0 198 0 0 0 chr9 73789281 73789303 -68482141 + (TA)n Simple_repeat Simple_repeat 1 22 0 621 293 21 79 chr9 73789336 73789616 -68481828 - LTR48B LTR ERV1 -358 264 1 22 35 0 0 chr9 73789682 73789711 -68481733 + AT_rich Low_complexity Low_complexity 1 29 0 524 248 13 65 chr9 73791737 73791782 -68479662 - MIR SINE MIR -108 154 108 835 244 11 0 chr9 73791782 73791958 -68479486 - MER45A DNA AcHobo 0 178 1 524 248 13 65 chr9 73791958 73792065 -68479379 - MIR SINE MIR -154 108 10 202 316 18 0 chr9 73792216 73792273 -68479171 + MIR SINE MIR 65 122 -140 24 53 0 0 chr9 73792316 73792354 -68479090 + AT_rich Low_complexity Low_complexity 1 38 0 526 263 0 8 chr9 73792488 73792621 -68478823 - MER94 DNA DNA -1 133 2 2230 128 0 0 chr9 73793982 73794286 -68477158 - AluSx SINE Alu -6 306 3 501 89 13 0 chr9 73794608 73794687 -68476757 - L1PA15 LINE L1 -1 6164 6085 194 432 0 11 chr9 73795406 73795501 -68475943 + MIR3 SINE MIR 7 100 -108 507 368 20 12 chr9 73795509 73795762 -68475682 - MIR SINE MIR -6 256 2 262 217 0 0 chr9 73795763 73795809 -68475635 + MIR3 SINE MIR 112 157 -51 6363 52 136 8 chr9 73795969 73796924 -68474520 - L1P LINE L1 -5069 1077 1 549 257 41 53 chr9 73796961 73797132 -68474312 - MIR SINE MIR 0 262 94 207 223 155 58 chr9 73797312 73797415 -68474029 + MIR SINE MIR 29 141 -67 1591 183 47 12 chr9 73798523 73798845 -68472599 - MLT1A1 LTR MaLR 0 365 33 277 231 0 0 chr9 73799873 73799925 -68471519 + L2 LINE L2 3221 3272 0 2881 94 0 0 chr9 73800324 73800726 -68470718 + L1P LINE L1 1 402 -5744 365 254 61 6 chr9 73800857 73801038 -68470406 + L1ME3A LINE L1 5022 5212 -934 301 165 158 101 chr9 73801038 73801196 -68470248 + L1MC5 LINE L1 7742 7908 -53 3399 169 2 32 chr9 73801354 73801982 -68469462 - MER52A LTR ERV1 0 1755 1147 28 48 0 0 chr9 73804218 73804260 -68467184 + AT_rich Low_complexity Low_complexity 1 42 0 1226 176 25 0 chr9 73804948 73805192 -68466252 + L1MB3 LINE L1 5933 6182 -1 356 254 121 22 chr9 73805197 73805429 -68466015 + L1ME4a LINE L1 5617 5871 -250 2400 80 3 0 chr9 73805605 73805905 -68465539 - AluSg SINE Alu -9 301 1 259 298 148 67 chr9 73806013 73806200 -68465244 - MIR3 SINE MIR -21 187 33 2315 75 3 0 chr9 73806200 73806492 -68464952 - AluY SINE Alu -18 293 1 259 298 148 67 chr9 73806492 73806528 -68464916 - MIR3 SINE MIR -175 33 1 301 316 79 35 chr9 73806771 73807147 -68464297 + MLT1I LTR MaLR 1 348 -61 4527 114 3 50 chr9 73807147 73807872 -68463572 - LTR8 LTR ERV1 0 691 1 301 316 79 35 chr9 73807872 73807922 -68463522 + MLT1I LTR MaLR 348 394 -15 285 340 48 68 chr9 73807930 73808136 -68463308 - L2 LINE L2 -182 3090 2889 892 229 31 35 chr9 73808167 73808425 -68463019 + LTR8 LTR ERV1 1 257 -434 719 184 21 0 chr9 73808531 73808672 -68462772 - MER52A LTR ERV1 -1611 144 1 700 276 139 11 chr9 73808680 73809141 -68462303 + L1ME3A LINE L1 5370 5889 -281 307 281 148 7 chr9 73810165 73810300 -68461144 + L2 LINE L2 3160 3313 0 200 267 22 0 chr9 73810329 73810374 -68461070 - MIR3 SINE MIR -46 162 117 1003 218 53 35 chr9 73810423 73810646 -68460798 - MLT2B1 LTR ERVL 0 520 303 180 0 0 0 chr9 73810646 73810666 -68460778 + (AGATG)n Simple_repeat Simple_repeat 1 20 0 1003 218 53 35 chr9 73810666 73810895 -68460549 - MLT2B1 LTR ERVL -217 303 13 1248 139 30 35 chr9 73812390 73812678 -68458766 - L1M4c LINE L1 -3921 2927 2647 2303 102 23 41 chr9 73812683 73813076 -68458368 + L1MA4 LINE L1 5910 6295 -5 2265 82 9 0 chr9 73813325 73813642 -68457802 + L1PB2 LINE L1 5828 6147 -4 22 56 0 0 chr9 73814990 73815026 -68456418 + AT_rich Low_complexity Low_complexity 1 36 0 2615 179 4 40 chr9 73815520 73816063 -68455381 + L1 LINE L1 3811 4333 -1813 6270 104 30 0 chr9 73816063 73817176 -68454268 - L1PA7 LINE L1 -1 6153 5027 3531 150 55 26 chr9 73817393 73818088 -68453356 - L1MA5 LINE L1 -8 6292 5578 214 295 57 38 chr9 73818131 73818236 -68453208 + MIR SINE MIR 125 231 -31 227 54 27 0 chr9 73818835 73818872 -68452572 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 1124 325 21 52 chr9 73818986 73819616 -68451828 + L1PA16 LINE L1 788 1397 -6177 370 333 0 0 chr9 73819737 73819836 -68451608 + L1PA16 LINE L1 2083 2181 -5400 243 300 0 0 chr9 73820052 73820112 -68451332 + L1PA16 LINE L1 2182 2241 -5340 634 114 0 0 chr9 73820128 73820216 -68451228 + 5S rRNA rRNA 33 120 -1 269 125 0 0 chr9 73820216 73820256 -68451188 + 5S rRNA rRNA 1 40 -81 13113 220 31 33 chr9 73820269 73824499 -68446945 + L1PA16 LINE L1 2258 6603 -1001 749 168 0 0 chr9 73824499 73824624 -68446820 + AluSg/x SINE Alu 168 292 -20 13113 220 31 33 chr9 73824624 73825625 -68445819 + L1PA16 LINE L1 6603 7604 0 2508 155 24 5 chr9 73826359 73826779 -68444665 + MSTA LTR MaLR 1 428 0 286 130 19 0 chr9 73827337 73827391 -68444053 + CT-rich Low_complexity Low_complexity 1 55 0 316 288 101 14 chr9 73829188 73829327 -68442117 - MIR SINE MIR 0 262 112 195 221 13 117 chr9 73830523 73830600 -68440844 + L3 LINE CR1 960 1028 -549 212 219 0 0 chr9 73831814 73831855 -68439589 - L2 LINE L2 -1 3312 3272 387 294 105 0 chr9 73832078 73832221 -68439223 - MIR SINE MIR -34 228 71 25 51 0 0 chr9 73832406 73832445 -68438999 + AT_rich Low_complexity Low_complexity 1 39 0 718 387 67 22 chr9 73833054 73833372 -68438072 + L2 LINE L2 2302 2604 -668 2020 215 78 72 chr9 73833372 73834022 -68437422 - MLT1E1 LTR MaLR 0 654 1 718 387 67 22 chr9 73834022 73834627 -68436817 + L2 LINE L2 2604 3271 -1 226 273 0 23 chr9 73835007 73835095 -68436349 + (CATAA)n Simple_repeat Simple_repeat 5 90 0 2113 135 3 0 chr9 73835513 73835825 -68435619 - AluSq SINE Alu 0 313 1 1256 275 58 18 chr9 73836009 73836557 -68434887 - L1MEc LINE L1 -3667 2548 2024 9885 113 16 1 chr9 73836557 73838790 -68432654 + L1PA8A LINE L1 3874 6125 -6 1256 275 58 18 chr9 73838790 73838896 -68432548 - L1MEc LINE L1 -4191 2024 1924 225 0 0 0 chr9 73838896 73838921 -68432523 + (TA)n Simple_repeat Simple_repeat 1 25 0 1256 275 58 18 chr9 73838921 73839177 -68432267 - L1MEc LINE L1 -4291 1924 1628 398 329 71 6 chr9 73839181 73839351 -68432093 - MLT1L LTR MaLR -82 533 353 230 332 201 9 chr9 73839397 73839611 -68431833 - MLT1L LTR MaLR -346 269 15 239 332 122 76 chr9 73840118 73840171 -68431273 - L3 LINE CR1 -199 1378 1329 765 264 93 5 chr9 73840171 73840364 -68431080 - MER63A DNA MER1_type 0 210 1 239 332 122 76 chr9 73840364 73840744 -68430700 - L3 LINE CR1 -248 1329 925 906 247 23 5 chr9 73840799 73841018 -68430426 - MER58A DNA MER1_type 0 224 2 1885 181 3 0 chr9 73841497 73841807 -68429637 - AluSx SINE Alu -1 311 1 491 204 0 0 chr9 73842035 73842123 -68429321 + MER97c DNA MER1_type? 108 195 -895 33 0 0 0 chr9 73842463 73842496 -68428948 + AT_rich Low_complexity Low_complexity 1 33 0 30 0 0 0 chr9 73844022 73844052 -68427392 + AT_rich Low_complexity Low_complexity 1 30 0 495 73 0 0 chr9 73844665 73844733 -68426711 + (TG)n Simple_repeat Simple_repeat 2 69 0 28 0 0 0 chr9 73845353 73845381 -68426063 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr9 73847081 73847107 -68424337 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr9 73848768 73848796 -68422648 + AT_rich Low_complexity Low_complexity 1 28 0 204 40 0 0 chr9 73849754 73849779 -68421665 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 73852644 73852665 -68418779 + AT_rich Low_complexity Low_complexity 1 21 0 437 290 8 23 chr9 73853285 73853416 -68418028 - MIR SINE MIR -61 147 19 908 217 12 0 chr9 73854558 73854724 -68416720 - FAM SINE Alu -7 168 1 238 182 23 0 chr9 73855651 73855695 -68415749 + CT-rich Low_complexity Low_complexity 3 47 0 2365 65 0 0 chr9 73855730 73856022 -68415422 + AluY SINE Alu 2 293 -18 21 0 0 0 chr9 73856022 73856043 -68415401 + AT_rich Low_complexity Low_complexity 1 21 0 346 235 0 0 chr9 73856246 73856314 -68415130 - MER58B DNA MER1_type -34 307 240 612 185 33 60 chr9 73856315 73856499 -68414945 + MER96B DNA MER1_type? 238 416 -1 726 219 51 6 chr9 73856500 73856678 -68414766 - MER58B DNA MER1_type -97 244 59 2396 232 122 14 chr9 73858392 73859722 -68411722 - L1ME1 LINE L1 -5 6161 4681 21 82 0 0 chr9 73860084 73860133 -68411311 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr9 73860870 73860900 -68410544 + AT_rich Low_complexity Low_complexity 1 30 0 510 248 93 77 chr9 73861011 73861334 -68410110 + L1ME3A LINE L1 5348 5675 -446 * 6344 83 9 4 chr9 73861326 73862410 -68409034 + L1PA8A LINE L1 5011 6104 -27 204 67 0 0 chr9 73862410 73862440 -68409004 + (T)n Simple_repeat Simple_repeat 1 30 0 24 53 0 0 chr9 73863414 73863452 -68407992 + AT_rich Low_complexity Low_complexity 1 38 0 1383 287 80 31 chr9 73863591 73864169 -68407275 - MER90 LTR ERV1 -8 606 1 327 297 180 0 chr9 73864169 73864297 -68407147 - MIR SINE MIR -104 158 8 1603 178 90 80 chr9 73865096 73865457 -68405987 + MLT2D LTR ERVL 1 368 -46 802 10 29 0 chr9 73865457 73865559 -68405885 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 1603 178 90 80 chr9 73865559 73865597 -68405847 + MLT2D LTR ERVL 368 404 -10 300 353 40 0 chr9 73865710 73865860 -68405584 + L2 LINE L2 2524 2679 -635 1569 199 7 7 chr9 73866036 73866343 -68405101 - AluJb SINE Alu -3 309 3 1116 37 0 15 chr9 73867049 73867183 -68404261 - AluY SINE Alu -179 132 1 887 228 16 0 chr9 73867187 73867371 -68404073 - MER5A DNA MER1_type -2 187 1 190 211 0 0 chr9 73867525 73867563 -68403881 + MIR SINE MIR 215 252 -10 237 260 14 0 chr9 73868055 73868128 -68403316 + (TA)n Simple_repeat Simple_repeat 2 75 0 252 258 0 34 chr9 73868128 73868217 -68403227 + L1MC4 LINE L1 6614 6699 -1343 682 212 169 21 chr9 73872742 73872931 -68398513 + MER20 DNA MER1_type 1 217 -2 2399 82 0 7 chr9 73873380 73873686 -68397758 - AluSg SINE Alu -6 304 1 2436 58 0 10 chr9 73874037 73874350 -68397094 + AluY SINE Alu 1 310 -1 664 259 27 27 chr9 73874507 73874731 -68396713 + L1ME3A LINE L1 5777 6000 -170 2118 205 71 108 chr9 73874811 73875459 -68395985 - MLT1E2 LTR MaLR 0 626 1 192 158 0 0 chr9 73875551 73875589 -68395855 - L2 LINE L2 -1 3312 3275 1133 208 96 10 chr9 73875589 73875902 -68395542 + LTR48B LTR ERV1 1 340 -304 432 0 0 0 chr9 73875902 73875950 -68395494 + (TA)n Simple_repeat Simple_repeat 2 49 0 1199 188 0 0 chr9 73875950 73876147 -68395297 - AluJb SINE Alu -5 307 111 1229 210 32 7 chr9 73876200 73876492 -68394952 + LTR48B LTR ERV1 291 642 -2 32 26 0 0 chr9 73876680 73876719 -68394725 + AT_rich Low_complexity Low_complexity 1 39 0 448 259 9 36 chr9 73877021 73877133 -68394311 + L2 LINE L2 3204 3312 -1 442 266 133 59 chr9 73877290 73877613 -68393831 + MLT1J2 LTR MaLR 37 383 -67 285 109 0 0 chr9 73877789 73877835 -68393609 + (TG)n Simple_repeat Simple_repeat 1 46 0 483 231 38 19 chr9 73877862 73878022 -68393422 + MER103 DNA DNA 4 166 0 1346 181 43 56 chr9 73878885 73879188 -68392256 + AluJo SINE Alu 5 303 -9 229 352 46 0 chr9 73879239 73879347 -68392097 + MIR SINE MIR 30 142 -66 30 59 0 0 chr9 73880064 73880115 -68391329 + AT_rich Low_complexity Low_complexity 1 51 0 324 0 0 0 chr9 73880222 73880258 -68391186 + (TG)n Simple_repeat Simple_repeat 1 36 0 384 59 0 0 chr9 73880258 73880309 -68391135 + (GA)n Simple_repeat Simple_repeat 2 52 0 345 167 0 206 chr9 73881807 73881933 -68389511 + LTR40a LTR ERVL 54 153 -366 213 306 12 47 chr9 73882342 73882427 -68389017 - MIR3 SINE MIR -6 202 121 319 341 72 24 chr9 73882735 73882943 -68388501 + MIR SINE MIR 41 258 -4 183 333 111 0 chr9 73883340 73883403 -68388041 - L2 LINE L2 -13 3300 3231 778 294 36 16 chr9 73883461 73883709 -68387735 - MIR SINE MIR 0 262 10 2310 174 66 0 chr9 73885130 73885554 -68385890 - LTR47A LTR ERVL 0 452 1 469 367 36 60 chr9 73885644 73885802 -68385642 - L2 LINE L2 -190 3123 2963 1896 168 0 0 chr9 73885802 73886111 -68385333 + AluSx SINE Alu 3 311 -1 469 367 36 60 chr9 73886111 73886409 -68385035 - L2 LINE L2 -350 2963 2680 1166 312 58 30 chr9 73886446 73886766 -68384678 - L2 LINE L2 -508 2806 2462 2177 114 0 0 chr9 73886766 73887065 -68384379 + AluSx SINE Alu 1 299 -13 1166 312 58 30 chr9 73887065 73887311 -68384133 - L2 LINE L2 -852 2462 2224 740 307 82 39 chr9 73887338 73887693 -68383751 + MLT1I LTR MaLR 32 401 -8 418 279 14 43 chr9 73887710 73887850 -68383594 - L2 LINE L2 -1106 2208 2073 279 0 0 0 chr9 73888426 73888457 -68382987 + (CA)n Simple_repeat Simple_repeat 1 31 0 373 306 67 89 chr9 73888517 73889013 -68382431 - HsTC2 DNA Tc2 -1378 520 36 607 289 72 14 chr9 73889460 73889668 -68381776 - L2 LINE L2 0 3313 3094 423 296 90 14 chr9 73889675 73889898 -68381546 - L2 LINE L2 -342 2972 2733 197 336 168 0 chr9 73891129 73891236 -68380208 + MIR SINE MIR 49 173 -89 282 208 22 7 chr9 73891669 73891816 -68379628 + CT-rich Low_complexity Low_complexity 1 149 0 21 57 0 0 chr9 73893066 73893101 -68378343 + AT_rich Low_complexity Low_complexity 1 35 0 180 359 43 0 chr9 73893395 73893487 -68377957 - MIR SINE MIR -36 226 131 1341 198 7 31 chr9 73893708 73894001 -68377443 - AluJo SINE Alu -16 296 11 1531 183 2 6 chr9 73894163 73894602 -68376842 - MER54A LTR ERVL 0 901 421 228 290 161 49 chr9 73894615 73894777 -68376667 - MER117 DNA MER1_type -1 196 17 1978 159 0 0 chr9 73895369 73895678 -68375766 + AluSx SINE Alu 1 309 -3 368 257 63 89 chr9 73895932 73896536 -68374908 + L1ME4a LINE L1 3589 4176 -1970 2888 123 55 2 chr9 73896596 73897051 -68374393 + HSMAR1 DNA Mariner 1 479 -808 5501 115 21 2 chr9 73897216 73898010 -68373434 + HSMAR1 DNA Mariner 479 1287 0 289 298 0 58 chr9 73898047 73898238 -68373206 + (TA)n Simple_repeat Simple_repeat 1 180 0 536 286 63 68 chr9 73898265 73898692 -68372752 + L1ME4a LINE L1 4364 4788 -1358 21 0 0 0 chr9 73898773 73898794 -68372650 + AT_rich Low_complexity Low_complexity 1 21 0 875 125 73 0 chr9 73898859 73898995 -68372449 + AluJb SINE Alu 1 146 -166 548 143 0 0 chr9 73898995 73899072 -68372372 + LTR9 LTR ERV1 536 612 0 345 245 20 29 chr9 73899097 73899199 -68372245 - MER5A DNA MER1_type -80 109 9 1646 205 53 134 chr9 73899329 73899993 -68371451 - LTR9 LTR ERV1 0 612 3 1252 182 43 6 chr9 73899999 73900272 -68371172 - HUERS-P3 LTR ERV1 -1 8918 7158 2227 86 6 13 chr9 73900411 73900724 -68370720 - AluY SINE Alu 0 311 1 2318 173 10 8 chr9 73900882 73901275 -68370169 - HUERS-P3 LTR ERV1 -2007 6912 6519 545 313 77 30 chr9 73901585 73902145 -68369299 + L1ME4a LINE L1 5330 5915 -206 26 64 0 0 chr9 73902236 73902283 -68369161 + AT_rich Low_complexity Low_complexity 1 47 0 244 209 0 105 chr9 73902296 73902345 -68369099 + A-rich Low_complexity Low_complexity 1 35 -59 1848 162 20 0 chr9 73902345 73902648 -68368796 + AluSx SINE Alu 1 309 -3 244 209 0 105 chr9 73902648 73902703 -68368741 + A-rich Low_complexity Low_complexity 35 94 0 23 0 0 0 chr9 73902741 73902764 -68368680 + AT_rich Low_complexity Low_complexity 1 23 0 2358 55 3 6 chr9 73902835 73903147 -68368297 - AluY SINE Alu 0 311 1 23 0 0 0 chr9 73903701 73903724 -68367720 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr9 73904163 73904187 -68367257 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 623 175 9 0 chr9 73904187 73904301 -68367143 - L1PA16 LINE L1 -20 6146 6032 237 65 0 0 chr9 73905333 73905364 -68366080 + (T)n Simple_repeat Simple_repeat 1 31 0 758 222 40 0 chr9 73905364 73905540 -68365904 + MER58A DNA MER1_type 42 224 0 424 0 36 0 chr9 73905599 73905655 -68365789 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 335 245 138 61 chr9 73906246 73906442 -68365002 + MIR SINE MIR 52 262 0 23 54 0 0 chr9 73907737 73907774 -68363670 + AT_rich Low_complexity Low_complexity 1 37 0 304 289 0 0 chr9 73907821 73907897 -68363547 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 610 387 84 23 chr9 73907963 73908658 -68362786 - L2 LINE L2 -44 3269 2521 227 307 71 14 chr9 73909143 73909283 -68362161 - HAL1b LINE L1 -6 1342 1195 286 385 0 34 chr9 73909309 73909457 -68361987 + MIR3 SINE MIR 4 146 -62 961 222 56 57 chr9 73909457 73909834 -68361610 + L1ME1 LINE L1 5796 6164 -2 3448 261 82 10 chr9 73909846 73911532 -68359912 + L1ME LINE L1 3951 5751 -413 1627 148 0 0 chr9 73911535 73911779 -68359665 + AluSg1 SINE Alu 48 291 -18 921 272 28 8 chr9 73913607 73913861 -68357583 - L1ME1 LINE L1 -6 6160 5902 296 136 0 0 chr9 73913861 73913905 -68357539 - Tigger4(Zombi) DNA MER2_type 0 2731 2688 825 194 157 64 chr9 73913907 73914187 -68357257 - L1M1 LINE L1 -387 5779 5480 315 273 129 8 chr9 73914531 73914663 -68356781 + MIR SINE MIR 65 212 -50 601 330 115 37 chr9 73914841 73915384 -68356060 - L2 LINE L2 -1 3312 2721 2344 192 61 2 chr9 73915402 73915877 -68355567 - MLT1D LTR MaLR -2 503 1 285 290 99 0 chr9 73916523 73916654 -68354790 - MIR SINE MIR 0 262 119 25 0 0 0 chr9 73916803 73916828 -68354616 + AT_rich Low_complexity Low_complexity 1 25 0 306 301 171 19 chr9 73918769 73918985 -68352459 + MIR SINE MIR 4 252 -10 3303 168 18 7 chr9 73919705 73920277 -68351167 - MER50 LTR ERV1 -23 711 134 4440 137 52 8 chr9 73920277 73921029 -68350415 - LTR1 LTR ERV1 0 785 1 679 164 86 7 chr9 73921061 73921201 -68350243 - MER50 LTR ERV1 -583 151 1 474 170 50 0 chr9 73921642 73921742 -68349702 + L1MA8 LINE L1 4693 4797 -1349 1613 160 0 0 chr9 73921742 73922010 -68349434 - AluSx SINE Alu -44 268 1 1118 129 40 45 chr9 73922010 73922234 -68349210 + THE1C LTR MaLR 153 375 0 425 268 184 6 chr9 73922264 73922432 -68349012 + MIR SINE MIR 35 232 -30 681 166 55 48 chr9 73923949 73924094 -68347350 + LTR47A LTR ERVL 221 366 -86 2566 156 41 11 chr9 73924096 73925467 -68345977 + L1MA8 LINE L1 4783 6290 -1 186 382 91 0 chr9 73925732 73925842 -68345602 + L2 LINE L2 3189 3308 -5 4905 216 23 14 chr9 73926961 73928171 -68343273 + L1MC1 LINE L1 5110 6333 0 395 202 35 18 chr9 73928155 73928269 -68343175 + L1M4 LINE L1 1776 1891 -4493 * 357 24 0 0 chr9 73928271 73928313 -68343131 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1448 206 120 10 chr9 73928317 73928784 -68342660 + L1M4 LINE L1 2033 2542 -3840 444 274 24 6 chr9 73928764 73928928 -68342516 + L1M4 LINE L1 5252 5418 -964 * 2431 77 0 0 chr9 73928937 73929248 -68342196 + AluY SINE Alu 1 311 0 22 56 0 0 chr9 73930902 73930938 -68340506 + AT_rich Low_complexity Low_complexity 1 36 0 607 298 74 33 chr9 73932363 73933117 -68338327 + L1ME3A LINE L1 1030 1814 -4582 273 269 0 0 chr9 73933514 73933581 -68337863 + MLT1E LTR MaLR 40 106 -487 640 303 57 29 chr9 73933584 73934207 -68337237 + L1ME3A LINE L1 2145 2761 -3454 288 0 0 0 chr9 73934207 73934239 -68337205 + (TG)n Simple_repeat Simple_repeat 2 33 0 640 303 57 29 chr9 73934239 73934337 -68337107 + L1ME3A LINE L1 2761 2855 -3360 330 259 83 67 chr9 73934563 73934756 -68336688 + MLT1H LTR MaLR 107 302 -247 230 209 43 50 chr9 73934997 73935136 -68336308 + L1ME3A LINE L1 3211 3348 -2867 1797 133 0 40 chr9 73935779 73935944 -68335500 - AluY SINE Alu -23 288 139 252 0 0 0 chr9 73935944 73935972 -68335472 + (TA)n Simple_repeat Simple_repeat 2 29 0 1797 133 0 40 chr9 73935972 73936106 -68335338 - AluY SINE Alu -172 139 1 195 204 0 0 chr9 73936778 73936827 -68334617 + (TA)n Simple_repeat Simple_repeat 2 50 0 303 28 0 0 chr9 73936915 73936951 -68334493 + (CA)n Simple_repeat Simple_repeat 2 37 0 2296 110 3 0 chr9 73937308 73937617 -68333827 + AluSx SINE Alu 3 312 0 7533 28 0 0 chr9 73937617 73938799 -68332645 + L1PA4 LINE L1 4953 6147 -8 443 322 13 20 chr9 73938874 73939023 -68332421 - MIR SINE MIR -86 176 29 274 316 59 40 chr9 73939657 73939809 -68331635 + L2 LINE L2 3159 3313 0 243 300 0 0 chr9 73939857 73939917 -68331527 + MIR SINE MIR 82 141 -121 1999 110 3 13 chr9 73940964 73941264 -68330180 + AluSx SINE Alu 1 297 -15 302 320 58 32 chr9 73941860 73942016 -68329428 - L1M4 LINE L1 -5667 1188 1029 378 239 84 36 chr9 73942347 73942514 -68328930 - L1M4 LINE L1 -6575 284 110 888 308 94 16 chr9 73942593 73943732 -68327712 + L1ME3A LINE L1 4332 5566 -667 275 206 19 28 chr9 73943732 73943839 -68327605 + GA-rich Low_complexity Low_complexity 2 107 0 1008 285 52 28 chr9 73943910 73944376 -68327068 + L1ME3A LINE L1 5581 6057 -182 469 81 0 0 chr9 73944443 73944505 -68326939 + Alu SINE Alu 232 293 -17 1214 198 28 32 chr9 73944507 73944790 -68326654 - AluJo SINE Alu -30 282 1 314 266 18 18 chr9 73944790 73944903 -68326541 + L1ME3A LINE L1 6118 6230 -9 461 17 17 0 chr9 73945486 73945544 -68325900 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 249 247 34 0 chr9 73945874 73945963 -68325481 + T-rich Low_complexity Low_complexity 2 93 0 1173 199 28 0 chr9 73945975 73946186 -68325258 + L1PA16 LINE L1 7 223 -6626 * 5385 191 27 56 chr9 73946185 73948628 -68322816 + L1PA16 LINE L1 4508 6869 0 276 184 58 12 chr9 73948659 73949091 -68322353 + (TA)n Simple_repeat Simple_repeat 1 451 0 192 172 0 0 chr9 73949105 73949163 -68322281 + (TATAA)n Simple_repeat Simple_repeat 2 59 0 33 43 0 0 chr9 73949163 73949210 -68322234 + AT_rich Low_complexity Low_complexity 1 47 0 182 152 73 13 chr9 73949213 73949364 -68322080 + (TA)n Simple_repeat Simple_repeat 1 160 0 390 282 63 111 chr9 73949364 73949807 -68321637 - L1MC4 LINE L1 -165 7877 7456 2232 109 0 6 chr9 73950124 73950436 -68321008 + AluSg SINE Alu 1 310 0 22 35 0 0 chr9 73950991 73951020 -68320424 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 73951098 73951126 -68320318 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 73951214 73951245 -68320199 + AT_rich Low_complexity Low_complexity 1 31 0 265 329 24 39 chr9 73951515 73951722 -68319722 + HAL1b LINE L1 397 600 -748 1552 186 21 10 chr9 73952171 73952461 -68318983 + AluJo SINE Alu 1 293 -19 23 0 0 0 chr9 73952509 73952532 -68318912 + AT_rich Low_complexity Low_complexity 1 23 0 1159 184 55 10 chr9 73953052 73953345 -68318099 + L1MA4 LINE L1 5993 6298 -2 647 170 44 30 chr9 73953425 73953560 -68317884 + L1MA9 LINE L1 5866 6002 -310 773 299 56 29 chr9 73954168 73954689 -68316755 + L1M4c LINE L1 1028 1562 -4822 1253 249 80 13 chr9 73954867 73955244 -68316200 - MLT1F LTR MaLR 0 542 141 4684 236 33 40 chr9 73955257 73958210 -68313234 - L1 LINE L1 -2793 3535 595 2036 162 50 19 chr9 73958222 73958598 -68312846 - MER61D LTR ERV1 0 501 114 3319 162 18 5 chr9 73958634 73959201 -68312243 - L1 LINE L1 -4742 586 13 246 229 57 0 chr9 73959243 73959313 -68312131 + L1ME3 LINE L1 5363 5436 -748 2249 92 34 0 chr9 73959318 73959613 -68311831 + AluSg SINE Alu 1 305 -5 709 289 68 68 chr9 73959635 73959974 -68311470 + L1ME3 LINE L1 5428 5769 -393 1223 229 23 33 chr9 73959974 73960276 -68311168 + AluJo SINE Alu 2 300 -12 709 289 68 68 chr9 73960276 73960407 -68311037 + L1ME3 LINE L1 5768 5898 -264 1369 203 133 3 chr9 73960415 73960716 -68310728 + MER2 DNA MER2_type 1 340 -5 312 272 41 67 chr9 73960742 73960937 -68310507 + L1ME3 LINE L1 5931 6120 -42 24 32 0 0 chr9 73961402 73961433 -68310011 + AT_rich Low_complexity Low_complexity 1 31 0 194 366 30 38 chr9 73961622 73961753 -68309691 - L2 LINE L2 -2 3270 3141 21 71 0 0 chr9 73962008 73962050 -68309394 + AT_rich Low_complexity Low_complexity 1 42 0 380 141 24 0 chr9 73962052 73962137 -68309307 + L1MA7 LINE L1 6204 6290 -1 22 0 0 0 chr9 73962305 73962327 -68309117 + AT_rich Low_complexity Low_complexity 1 22 0 687 268 81 79 chr9 73964112 73964657 -68306787 - MLT1H1 LTR MaLR -9 546 1 26 30 0 0 chr9 73965754 73965787 -68305657 + AT_rich Low_complexity Low_complexity 1 33 0 445 288 0 9 chr9 73966153 73966264 -68305180 + MER117 DNA MER1_type 2 111 -86 33 0 0 0 chr9 73967134 73967167 -68304277 + AT_rich Low_complexity Low_complexity 1 33 0 326 303 92 9 chr9 73967173 73967282 -68304162 + MIR SINE MIR 3 120 -142 227 91 0 0 chr9 73967284 73967317 -68304127 - MLT2B1 LTR ERVL -9 405 373 254 161 51 8 chr9 73967329 73967447 -68303997 + (TA)n Simple_repeat Simple_repeat 1 123 0 1410 235 56 63 chr9 73967496 73967892 -68303552 - MLT2B1 LTR ERVL -125 395 3 1918 159 0 28 chr9 73968054 73968374 -68303070 - AluSx SINE Alu -1 311 1 252 427 24 0 chr9 73969048 73969172 -68302272 + L2 LINE L2 2619 2745 -569 377 343 41 7 chr9 73969256 73969402 -68302042 + MIR SINE MIR 2 152 -110 2378 131 41 7 chr9 73969732 73970145 -68301299 + MSTA LTR MaLR 1 427 -1 406 315 55 20 chr9 73970164 73970310 -68301134 - MIR SINE MIR -110 152 2 45 45 0 0 chr9 73970821 73970887 -68300557 + AT_rich Low_complexity Low_complexity 1 66 0 227 103 26 0 chr9 73971038 73971077 -68300367 + GA-rich Low_complexity Low_complexity 1 40 0 212 115 19 58 chr9 73972261 73972313 -68299131 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 801 102 78 8 chr9 73972814 73972942 -68298502 - MER85 DNA T2_type -2 137 1 379 347 52 55 chr9 73973327 73973710 -68297734 + MLT1I LTR MaLR 25 406 -3 28 0 0 0 chr9 73974111 73974139 -68297305 + AT_rich Low_complexity Low_complexity 1 28 0 1332 288 77 86 chr9 73975256 73976397 -68295047 + L1MB8 LINE L1 13 1143 -5399 3343 246 98 35 chr9 73976438 73978176 -68293268 + L1MB8 LINE L1 2358 4206 -2438 * 3566 231 45 21 chr9 73978172 73980042 -68291402 + L1MB8 LINE L1 4770 6675 -1 192 292 125 58 chr9 73981579 73981699 -68289745 - MIR SINE MIR -116 146 19 1680 317 101 44 chr9 73981777 73982391 -68289053 + L2 LINE L2 1986 2564 -749 651 316 81 34 chr9 73982391 73982885 -68288559 + LTR33 LTR ERVL 5 521 0 1680 317 101 44 chr9 73982885 73983479 -68287965 + L2 LINE L2 2564 3286 -27 225 0 0 0 chr9 73983512 73983537 -68287907 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 222 152 22 22 chr9 73983544 73983590 -68287854 - MIR SINE MIR -98 164 119 213 347 31 10 chr9 73983632 73983730 -68287714 + L2 LINE L2 3171 3270 -2 2219 105 3 3 chr9 73985126 73985432 -68286012 + AluSc SINE Alu 3 308 -1 5744 183 38 18 chr9 73985637 73986721 -68284723 + Ricksha DNA DNA 123 1233 -2013 1700 163 0 4 chr9 73986721 73986998 -68284446 + AluSx SINE Alu 35 310 -2 5744 183 38 18 chr9 73986998 73987050 -68284394 + Ricksha DNA DNA 1233 1282 -1964 5105 201 30 9 chr9 73987050 73988235 -68283209 + L1 LINE L1 3096 4305 -1841 232 280 32 21 chr9 73988241 73988334 -68283110 - MLT1F1 LTR MaLR -450 117 24 1120 265 25 9 chr9 73988335 73988656 -68282788 - L1MC3 LINE L1 -701 7084 6759 * 4559 242 73 53 chr9 73988644 73990660 -68280784 - L1M4 LINE L1 -1049 5097 3042 840 341 57 39 chr9 73990909 73991454 -68279990 - L1MCb LINE L1 -5473 572 18 36 40 0 0 chr9 73991874 73991924 -68279520 + AT_rich Low_complexity Low_complexity 1 50 0 2139 113 0 10 chr9 73992742 73993053 -68278391 + AluSc SINE Alu 1 308 -1 769 306 87 6 chr9 73993845 73994178 -68277266 + L1MB3 LINE L1 5381 5740 -2068 206 62 31 0 chr9 73994292 73994324 -68277120 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 1163 299 102 69 chr9 73994451 73995542 -68275902 + L1MC4 LINE L1 6413 7481 -327 1867 180 67 30 chr9 73995543 73996077 -68275367 + MLT2A2 LTR ERVL 1 554 0 6569 124 10 4 chr9 73996077 73997053 -68274391 + HERVL-A2 LTR ERVL 1 982 -4672 6063 113 20 5 chr9 73997049 73997925 -68273519 + HERVL LTR ERVL 4692 5581 -73 * 240 86 0 0 chr9 73997982 73998017 -68273427 + (TG)n Simple_repeat Simple_repeat 2 36 0 2416 157 10 128 chr9 73998132 73998624 -68272820 + Tigger2 DNA MER2_type 1 2718 0 231 174 0 22 chr9 73999082 73999128 -68272316 - L2 LINE L2 -4 3309 3265 408 349 40 0 chr9 73999450 73999602 -68271842 + MIR SINE MIR 3 160 -102 21 0 0 0 chr9 73999836 73999857 -68271587 + AT_rich Low_complexity Low_complexity 1 21 0 1807 248 56 2 chr9 74003832 74004275 -68267169 - L1ME1 LINE L1 -55 6111 5645 1409 287 148 50 chr9 74005735 74006871 -68264573 - L2 LINE L2 0 3313 2067 852 203 28 74 chr9 74007242 74007459 -68263985 + MER20 DNA MER1_type 13 219 0 498 111 25 0 chr9 74007590 74007671 -68263773 - L1MB4 LINE L1 -4 6176 6094 303 160 0 0 chr9 74007685 74007735 -68263709 + L1MB3 LINE L1 5905 5954 -229 468 285 87 34 chr9 74007824 74008031 -68263413 - LTR50 LTR ERVL -113 682 465 24 32 0 0 chr9 74008544 74008575 -68262869 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr9 74008597 74008619 -68262825 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr9 74015555 74015578 -68255866 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 74017531 74017568 -68253876 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr9 74018075 74018102 -68253342 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr9 74018345 74018373 -68253071 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 74021109 74021138 -68250306 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr9 74021766 74021794 -68249650 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 74028457 74028480 -68242964 + AT_rich Low_complexity Low_complexity 1 23 0 37 39 0 0 chr9 74031564 74031615 -68239829 + AT_rich Low_complexity Low_complexity 1 51 0 31 0 0 0 chr9 74038573 74038604 -68232840 + AT_rich Low_complexity Low_complexity 1 31 0 31 44 0 0 chr9 74039135 74039180 -68232264 + AT_rich Low_complexity Low_complexity 1 45 0 23 92 0 0 chr9 74039767 74039832 -68231612 + AT_rich Low_complexity Low_complexity 1 65 0 35 41 0 0 chr9 74040920 74040969 -68230475 + AT_rich Low_complexity Low_complexity 1 49 0 25 75 0 0 chr9 74050304 74050357 -68221087 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr9 74050697 74050718 -68220726 + AT_rich Low_complexity Low_complexity 1 21 0 1604 198 122 9 chr9 74074776 74075104 -68196340 - MLT1A1 LTR MaLR 0 365 1 619 322 111 20 chr9 74075608 74075906 -68195538 + L2 LINE L2 922 1246 -2068 281 262 197 27 chr9 74075912 74076095 -68195349 + L1ME LINE L1 5326 5539 -582 546 339 127 26 chr9 74076095 74076552 -68194892 - L2 LINE L2 -2 3311 2809 275 277 69 50 chr9 74076642 74076844 -68194600 + L1ME LINE L1 5541 5746 -375 341 260 142 16 chr9 74076899 74077026 -68194418 - L2 LINE L2 0 3313 3171 353 339 105 65 chr9 74077648 74078525 -68192919 - L2 LINE L2 0 3313 2395 6127 153 22 30 chr9 74078588 74079746 -68191698 - L1MC1 LINE L1 0 6333 5185 2214 109 0 44 chr9 74080347 74080667 -68190777 + AluSx SINE Alu 1 306 -6 736 259 62 25 chr9 74080901 74081144 -68190300 - MIR SINE MIR 0 262 11 366 323 77 46 chr9 74081700 74081895 -68189549 + MIR SINE MIR 62 262 0 24 53 0 0 chr9 74082053 74082091 -68189353 + AT_rich Low_complexity Low_complexity 1 38 0 247 233 0 33 chr9 74082513 74082573 -68188871 + (TATG)n Simple_repeat Simple_repeat 2 59 0 1805 182 31 0 chr9 74082818 74083109 -68188335 - AluJb SINE Alu -12 300 1 721 268 48 55 chr9 74083776 74084048 -68187396 - Charlie8 DNA MER1_type -2136 281 12 229 234 0 0 chr9 74084084 74084131 -68187313 - MIR SINE MIR -130 132 86 1030 321 58 30 chr9 74084427 74084673 -68186771 + L2 LINE L2 2224 2462 -852 1953 144 0 0 chr9 74084673 74084972 -68186472 - AluSx SINE Alu -13 299 1 1030 321 58 30 chr9 74084972 74085292 -68186152 + L2 LINE L2 2462 2806 -508 415 374 26 8 chr9 74085329 74085594 -68185850 + L2 LINE L2 2680 2949 -365 25 0 0 0 chr9 74085613 74085638 -68185806 + AT_rich Low_complexity Low_complexity 1 25 0 420 238 0 0 chr9 74085651 74085731 -68185713 - AluSg/x SINE Alu -25 284 205 2015 116 23 0 chr9 74185741 74186051 -68085393 - L1P LINE L1 -1092 5054 4738 1207 92 4 5 chr9 74186056 74186232 -68085212 + L1M4c LINE L1 1475 2114 -4268 23 0 0 0 chr9 74186521 74186544 -68084900 + AT_rich Low_complexity Low_complexity 1 23 0 4764 103 21 22 chr9 74186835 74187595 -68083849 - L1PA13 LINE L1 -10 6153 5395 5642 141 27 1 chr9 74187596 74188443 -68083001 - L1PA12 LINE L1 -5614 1967 1099 556 174 159 0 chr9 74188545 74188683 -68082761 - MSTC LTR MaLR -264 164 5 387 314 99 29 chr9 74188686 74188922 -68082522 + L2 LINE L2 3054 3307 -1 769 54 36 9 chr9 74188922 74189033 -68082411 + L1PA4 LINE L1 6041 6154 -1 572 192 8 77 chr9 74189091 74189221 -68082223 + L1PA12 LINE L1 1 121 -7460 4410 195 14 4 chr9 74189237 74190138 -68081306 + L1PA12 LINE L1 101 1900 -5681 3714 200 59 65 chr9 74190561 74191266 -68080178 - Tigger6a DNA MER2_type -514 1083 385 7825 17 0 0 chr9 74191266 74192636 -68078808 - L1PA3 LINE L1 -3 6152 4784 3714 200 59 65 chr9 74192636 74193016 -68078428 - Tigger6a DNA MER2_type -1212 385 4 425 354 14 50 chr9 74193539 74193816 -68077628 - L3 LINE CR1 -140 1437 1171 1227 172 5 0 chr9 74193894 74194126 -68077318 + AluSg/x SINE Alu 85 317 0 2242 41 0 4 chr9 74194998 74195264 -68076180 - AluY SINE Alu -11 300 36 234 328 86 52 chr9 74197554 74197670 -68073774 + L2 LINE L2 3134 3253 -19 2300 108 3 0 chr9 74197812 74198117 -68073327 + AluSx SINE Alu 1 306 -6 579 219 96 27 chr9 74198487 74198633 -68072811 + MER5A DNA MER1_type 2 157 -32 180 313 112 37 chr9 74198951 74199085 -68072359 - MER5B DNA MER1_type -26 152 9 539 177 13 215 chr9 74199100 74199337 -68072107 + MER5A DNA MER1_type 1 189 0 201 236 0 73 chr9 74200066 74200121 -68071323 - L2 LINE L2 0 3313 3263 236 294 0 49 chr9 74200178 74200190 -68071254 - L1MC4 LINE L1 -1332 6710 6699 246 32 0 0 chr9 74200190 74200221 -68071223 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 294 0 49 chr9 74200221 74200310 -68071134 - L1MC4 LINE L1 -1343 6699 6614 225 204 0 20 chr9 74200281 74200330 -68071114 + L1MC4 LINE L1 6663 6710 -1332 * 823 139 0 0 chr9 74201499 74201621 -68069823 + AluSq/x SINE Alu 1 122 -190 423 0 0 0 chr9 74201621 74201668 -68069776 + (TAA)n Simple_repeat Simple_repeat 2 48 0 427 206 45 32 chr9 74201926 74202081 -68069363 + L1MC4 LINE L1 7688 7844 -198 33 43 0 0 chr9 74202100 74202147 -68069297 + AT_rich Low_complexity Low_complexity 1 47 0 207 179 0 0 chr9 74202167 74202206 -68069238 + GA-rich Low_complexity Low_complexity 1 39 0 216 271 21 21 chr9 74202712 74202808 -68068636 + A-rich Low_complexity Low_complexity 2 97 0 2128 109 0 0 chr9 74203077 74203362 -68068082 + AluY SINE Alu 1 285 -26 213 65 0 0 chr9 74203369 74203400 -68068044 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 25 0 0 0 chr9 74203692 74203717 -68067727 + AT_rich Low_complexity Low_complexity 1 25 0 34 89 0 0 chr9 74203773 74203863 -68067581 + AT_rich Low_complexity Low_complexity 1 90 0 22 0 0 0 chr9 74204167 74204189 -68067255 + AT_rich Low_complexity Low_complexity 1 22 0 727 225 79 59 chr9 74204214 74204467 -68066977 - L1MC5 LINE L1 -1062 6899 6642 269 233 0 14 chr9 74204609 74204682 -68066762 + (TTA)n Simple_repeat Simple_repeat 1 72 0 1114 280 113 27 chr9 74205014 74205600 -68065844 - L1MC4a LINE L1 -1762 6046 5411 36 23 0 0 chr9 74205652 74205695 -68065749 + AT_rich Low_complexity Low_complexity 1 43 0 809 216 94 0 chr9 74206188 74206369 -68065075 + MER3 DNA MER1_type 12 209 0 203 234 21 0 chr9 74206713 74206760 -68064684 + (TA)n Simple_repeat Simple_repeat 1 48 0 291 197 33 0 chr9 74207114 74207175 -68064269 - MIR3 SINE MIR -43 165 103 298 349 34 20 chr9 74207187 74207336 -68064108 - L2 LINE L2 -1 3312 3162 1250 306 42 63 chr9 74207346 74208272 -68063172 - L2 LINE L2 0 3313 2407 1978 115 0 0 chr9 74208397 74208687 -68062757 - AluSx SINE Alu 0 312 23 2641 287 76 46 chr9 74208730 74209846 -68061598 - L2 LINE L2 -337 2977 1828 2266 96 0 0 chr9 74210158 74210460 -68060984 - AluY SINE Alu -9 302 1 1552 211 0 24 chr9 74210642 74210953 -68060491 + AluJb SINE Alu 1 304 0 21 36 0 0 chr9 74211790 74211818 -68059626 + AT_rich Low_complexity Low_complexity 1 28 0 1994 110 0 47 chr9 74212248 74212547 -68058897 + AluSx SINE Alu 1 285 -27 198 210 12 161 chr9 74212636 74212649 -68058795 - MIR3 SINE MIR -43 165 152 867 239 28 0 chr9 74212649 74212829 -68058615 + MER5A DNA MER1_type 1 185 -4 198 210 12 161 chr9 74212829 74212896 -68058548 - MIR3 SINE MIR -56 152 97 269 308 19 0 chr9 74213101 74213205 -68058239 + MLT1L LTR MaLR 149 254 -361 259 302 17 17 chr9 74213447 74213563 -68057881 + MLT1K LTR MaLR 464 579 -9 7697 18 0 0 chr9 74213954 74215334 -68056110 + L1PA3 LINE L1 4803 6182 0 185 270 16 32 chr9 74215390 74215453 -68055991 + MIR SINE MIR 153 214 -48 24 0 0 0 chr9 74215883 74215907 -68055537 + AT_rich Low_complexity Low_complexity 1 24 0 2132 142 0 0 chr9 74215936 74216239 -68055205 - AluSx SINE Alu -9 303 1 258 255 85 9 chr9 74216620 74216726 -68054718 - L1MC/D LINE L1 -1920 5888 5775 22 0 0 0 chr9 74217677 74217699 -68053745 + AT_rich Low_complexity Low_complexity 1 22 0 229 306 118 94 chr9 74219115 74219488 -68051956 + L2 LINE L2 2891 3272 0 2114 117 14 0 chr9 74219597 74219888 -68051556 + AluSx SINE Alu 3 297 -15 1257 237 27 24 chr9 74219889 74220227 -68051217 - MER4D LTR ERV1 -16 887 549 1525 188 28 3 chr9 74220262 74220549 -68050895 - MER49 LTR ERV1 -629 294 1 1305 266 116 18 chr9 74220704 74221256 -68050188 + HsTC2 DNA Tc2 1284 1889 -9 22 0 0 0 chr9 74222589 74222611 -68048833 + AT_rich Low_complexity Low_complexity 1 22 0 385 281 195 14 chr9 74222777 74222987 -68048457 - MIR SINE MIR -10 252 5 275 330 28 0 chr9 74224001 74224107 -68047337 + L3 LINE CR1 1467 1575 -2 1656 161 72 0 chr9 74224237 74224516 -68046928 + AluSx SINE Alu 1 299 -13 198 103 0 0 chr9 74225973 74226002 -68045442 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 720 191 0 0 chr9 74226004 74226119 -68045325 - FLAM_A SINE Alu -18 115 1 272 331 36 29 chr9 74226631 74226770 -68044674 + MIR3 SINE MIR 57 196 -12 269 118 20 0 chr9 74227386 74227437 -68044007 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 26 0 0 0 chr9 74227532 74227558 -68043886 + AT_rich Low_complexity Low_complexity 1 26 0 221 235 0 0 chr9 74230704 74230755 -68040689 + (CA)n Simple_repeat Simple_repeat 2 52 0 221 269 42 109 chr9 74231303 74231496 -68039948 - L2 LINE L2 -1072 2242 2063 1602 189 0 28 chr9 74231711 74232029 -68039415 + AluJo SINE Alu 1 309 -3 2036 197 90 33 chr9 74232050 74232597 -68038847 + L1ME2 LINE L1 5578 6155 -9 27 49 0 0 chr9 74233833 74233874 -68037570 + AT_rich Low_complexity Low_complexity 1 41 0 1623 213 43 19 chr9 74234082 74234453 -68036991 - MLT1B LTR MaLR -10 380 1 873 257 43 0 chr9 74235105 74235315 -68036129 - MER20 DNA MER1_type 0 219 1 186 43 0 0 chr9 74235379 74235402 -68036042 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 252 196 49 147 chr9 74235482 74235666 -68035778 + HAL1 LINE L1 42 207 -2300 189 0 0 0 chr9 74235673 74235694 -68035750 + (T)n Simple_repeat Simple_repeat 1 21 0 6245 79 4 4 chr9 74235694 74237046 -68034398 - L1PA8 LINE L1 0 6172 4850 772 54 36 9 chr9 74237118 74237229 -68034215 - L1PA4 LINE L1 -1 6154 6041 1620 336 139 27 chr9 74237229 74237468 -68033976 - L2 LINE L2 -7 3306 3095 1913 167 63 39 chr9 74237468 74237882 -68033562 + MSTC LTR MaLR 5 428 0 1620 336 139 27 chr9 74237882 74239243 -68032201 - L2 LINE L2 -218 3095 1528 22 35 0 0 chr9 74239400 74239429 -68032015 + AT_rich Low_complexity Low_complexity 1 29 0 1089 132 0 0 chr9 74239805 74239957 -68031487 - AluSq SINE Alu -15 298 147 210 37 0 0 chr9 74240493 74240520 -68030924 + (CA)n Simple_repeat Simple_repeat 1 27 0 189 196 0 0 chr9 74240603 74240649 -68030795 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr9 74241968 74241991 -68029453 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr9 74242360 74242389 -68029055 + AT_rich Low_complexity Low_complexity 1 29 0 37 62 0 0 chr9 74242780 74242845 -68028599 + AT_rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr9 74243052 74243074 -68028370 + AT_rich Low_complexity Low_complexity 1 22 0 406 294 0 49 chr9 74243406 74243549 -68027895 - MER5B DNA MER1_type 0 178 43 3546 148 55 26 chr9 74244605 74245300 -68026144 - L1MA5 LINE L1 -8 6292 5578 23 54 0 0 chr9 74245854 74245891 -68025553 + AT_rich Low_complexity Low_complexity 1 37 0 240 86 0 0 chr9 74248432 74248467 -68022977 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 615 340 102 38 chr9 74249309 74249780 -68021664 - L3 LINE CR1 -3 1574 1074 532 324 148 41 chr9 74250111 74250535 -68020909 - L3 LINE CR1 -531 1046 556 2154 123 0 3 chr9 74250535 74250837 -68020607 - AluSx SINE Alu -11 301 1 532 324 148 41 chr9 74250837 74250925 -68020519 - L3 LINE CR1 -1021 556 479 24 67 0 0 chr9 74251110 74251155 -68020289 + AT_rich Low_complexity Low_complexity 1 45 0 7691 77 24 1 chr9 74253049 74254102 -68017342 - L1PA7 LINE L1 -1145 5001 3925 6538 72 8 1 chr9 74254103 74255287 -68016157 + L1PA7 LINE L1 5003 6184 0 245 286 50 25 chr9 74257342 74257461 -68013983 - L1MEc LINE L1 -4430 1966 1845 30 27 0 0 chr9 74257490 74257527 -68013917 + AT_rich Low_complexity Low_complexity 1 37 0 806 278 54 39 chr9 74257573 74257980 -68013464 - L1MEc LINE L1 -4593 1803 1391 459 287 134 16 chr9 74258246 74258734 -68012710 + L1MC5 LINE L1 7089 7495 -496 728 224 24 12 chr9 74258945 74259191 -68012253 - L1 LINE L1 -2808 3338 3090 1032 330 24 12 chr9 74259451 74259787 -68011657 - MLT1H LTR MaLR -201 348 9 299 288 73 47 chr9 74259861 74260052 -68011392 + LTR50 LTR ERVL 1 196 -599 745 219 91 51 chr9 74261921 74262195 -68009249 - L1ME2 LINE L1 -91 6073 5789 22 0 0 0 chr9 74263462 74263484 -68007960 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr9 74263524 74263547 -68007897 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 811 31 0 0 chr9 74263547 74263643 -68007801 - L1PA3 LINE L1 -6 6149 6054 3186 208 31 8 chr9 74263798 74264569 -68006875 - L1PA13 LINE L1 -2685 3461 2673 8324 197 13 9 chr9 74264570 74265303 -68006141 + L1PA13 LINE L1 3476 4204 -1959 198 0 0 0 chr9 74265303 74265325 -68006119 + (TC)n Simple_repeat Simple_repeat 2 23 0 8324 197 13 9 chr9 74265325 74267303 -68004141 + L1PA13 LINE L1 4204 6152 -11 180 0 0 0 chr9 74267357 74267377 -68004067 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2143 106 10 16 chr9 74268568 74268871 -68002573 - AluSg SINE Alu -9 301 1 191 351 75 63 chr9 74270579 74270818 -68000626 + L2 LINE L2 3012 3253 -19 690 308 146 31 chr9 74270842 74271287 -68000157 - L2 LINE L2 -8 3305 2810 619 296 38 28 chr9 74271365 74271656 -67999788 - MARNA DNA Mariner -17 569 276 692 182 19 0 chr9 74272298 74272452 -67998992 + L1MA8 LINE L1 6135 6291 0 208 175 25 0 chr9 74273561 74273601 -67997843 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 188 353 12 24 chr9 74274159 74274244 -67997200 - L2 LINE L2 -204 3068 2985 289 345 72 0 chr9 74274486 74274625 -67996819 - MIR SINE MIR -82 180 32 2319 35 42 3 chr9 74274731 74275020 -67996424 + AluY SINE Alu 1 300 -11 1004 299 131 42 chr9 74275550 74276517 -67994927 - HAL1 LINE L1 -4 2503 1451 212 298 105 70 chr9 74278111 74278225 -67993219 + L3 LINE CR1 1458 1575 -2 2917 208 42 34 chr9 74278796 74278875 -67992569 - LTR58 LTR ERV1 -1 678 601 2647 172 13 118 chr9 74278875 74279647 -67991797 - LTR8 LTR ERV1 0 691 1 2917 208 42 34 chr9 74279647 74280240 -67991204 - LTR58 LTR ERV1 -78 601 1 1880 153 0 10 chr9 74280615 74280910 -67990534 - AluSx SINE Alu -20 292 1 203 286 0 0 chr9 74281095 74281144 -67990300 + L2 LINE L2 3265 3313 0 202 209 23 0 chr9 74281623 74281666 -67989778 + (TTG)n Simple_repeat Simple_repeat 2 45 0 332 389 15 0 chr9 74283343 74283474 -67987970 - L2 LINE L2 -5 3308 3176 1565 197 3 7 chr9 74283479 74283785 -67987659 - AluJo SINE Alu 0 305 1 191 133 50 17 chr9 74283953 74284013 -67987431 + (TA)n Simple_repeat Simple_repeat 2 63 0 1103 57 0 0 chr9 74284331 74284471 -67986973 - L1PA7 LINE L1 -6 6148 6009 495 296 10 75 chr9 74284691 74284751 -67986693 - L3 LINE CR1 -121 1456 1394 249 108 0 0 chr9 74284751 74284788 -67986656 + (CAA)n Simple_repeat Simple_repeat 3 39 0 495 296 10 75 chr9 74284788 74284926 -67986518 - L3 LINE CR1 -183 1394 1271 272 281 73 0 chr9 74285032 74285114 -67986330 + L2 LINE L2 3185 3272 0 375 284 50 79 chr9 74285153 74285431 -67986013 - LTR16A1 LTR ERVL 0 457 188 322 293 13 0 chr9 74287094 74287169 -67984275 - MIR SINE MIR -146 116 41 271 261 0 58 chr9 74287186 74287255 -67984189 - MIR SINE MIR -195 67 3 636 257 48 14 chr9 74288199 74288548 -67982896 + L1ME3A LINE L1 5170 5562 -602 287 235 35 0 chr9 74288593 74288678 -67982766 + L1ME3A LINE L1 6078 6165 -5 1034 263 126 22 chr9 74289626 74289924 -67981520 - MLT1G LTR MaLR -6 536 165 348 94 0 0 chr9 74289924 74289977 -67981467 + (CA)n Simple_repeat Simple_repeat 2 54 0 1034 263 126 22 chr9 74289977 74290155 -67981289 - MLT1G LTR MaLR -377 165 7 324 281 84 45 chr9 74290190 74290368 -67981076 - MLT1G-int LTR MaLR -33 1338 1154 2025 163 19 16 chr9 74291159 74291533 -67979911 + THE1C LTR MaLR 1 375 0 2676 119 93 9 chr9 74291533 74291985 -67979459 + THE1C-int LTR MaLR 1 490 -1090 2019 129 3 19 chr9 74291981 74292298 -67979146 + THE1C-int LTR MaLR 1269 1580 0 * 2010 151 32 19 chr9 74292298 74292668 -67978776 + THE1C LTR MaLR 1 375 0 299 309 10 0 chr9 74292974 74293071 -67978373 - MLT1G-int LTR MaLR -1269 102 5 725 237 24 12 chr9 74293098 74293267 -67978177 - MLT1G LTR MaLR -16 574 404 207 0 0 0 chr9 74293952 74293975 -67977469 + (TG)n Simple_repeat Simple_repeat 2 24 0 1581 221 21 9 chr9 74294338 74294678 -67976766 + Tigger7 DNA MER2_type 1 344 -2143 962 167 0 0 chr9 74294672 74294822 -67976622 + Tigger7 DNA MER2_type 2338 2487 0 * 30417 117 15 59 chr9 74294886 74301324 -67970120 + L1PA7 LINE L1 12 6154 0 23 0 0 0 chr9 74302462 74302485 -67968959 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 74302791 74302812 -67968632 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr9 74303930 74303986 -67967458 + AT_rich Low_complexity Low_complexity 1 56 0 195 318 135 0 chr9 74305109 74305235 -67966209 - MIR SINE MIR -44 218 76 340 298 101 54 chr9 74306128 74306702 -67964742 - L1ME4a LINE L1 -5 6099 5499 454 311 92 5 chr9 74307513 74307709 -67963735 + L2 LINE L2 2150 2362 -952 183 80 0 0 chr9 74308087 74308112 -67963332 + (T)n Simple_repeat Simple_repeat 1 25 0 3193 11 14 0 chr9 74308116 74308487 -67962957 - L1HS LINE L1 0 6155 5780 460 400 54 11 chr9 74308534 74308904 -67962540 + L2 LINE L2 2919 3304 -9 549 286 21 13 chr9 74309846 74310084 -67961360 - L1ME4a LINE L1 -1093 5036 4797 428 244 88 110 chr9 74310143 74310680 -67960764 - L1ME4a LINE L1 -4916 1203 679 23 33 0 0 chr9 74310699 74310729 -67960715 + AT_rich Low_complexity Low_complexity 1 30 0 2658 257 61 31 chr9 74311332 74311535 -67959909 + L1M3e LINE L1 1 197 -6910 191 88 29 0 chr9 74311535 74311569 -67959875 + (CATA)n Simple_repeat Simple_repeat 1 35 0 2658 257 61 31 chr9 74311569 74313096 -67958348 + L1M3e LINE L1 197 2927 -4180 5123 156 55 20 chr9 74313115 74314138 -67957306 + L1MA9 LINE L1 5254 6312 0 21 0 0 0 chr9 74314295 74314316 -67957128 + AT_rich Low_complexity Low_complexity 1 21 0 961 119 0 0 chr9 74314354 74314488 -67956956 + AluSc SINE Alu 1 134 -175 2077 123 3 0 chr9 74314488 74314781 -67956663 + AluSg SINE Alu 1 294 -16 186 43 0 0 chr9 74315163 74315186 -67956258 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2148 120 0 3 chr9 74315189 74315488 -67955956 - AluSq SINE Alu -15 298 1 216 326 62 45 chr9 74316544 74316722 -67954722 + L2 LINE L2 3127 3307 -6 613 291 80 41 chr9 74317580 74317953 -67953491 + MLT1J LTR MaLR 69 511 0 184 229 213 0 chr9 74317953 74318014 -67953430 + L2 LINE L2 3238 3311 -2 916 52 22 0 chr9 74318409 74318543 -67952901 + (TCTA)n Simple_repeat Simple_repeat 1 137 0 1600 232 134 9 chr9 74320094 74320556 -67950888 - MLT2B1 LTR ERVL 0 520 1 547 299 11 27 chr9 74320820 74321007 -67950437 - MIR SINE MIR -62 200 17 584 236 110 16 chr9 74324071 74324262 -67947182 + LTR16A1 LTR ERVL 223 431 -26 668 321 77 9 chr9 74324664 74324988 -67946456 + MLT2F LTR ERVL 19 364 -299 1363 292 84 37 chr9 74324989 74325500 -67945944 + HERVL LTR ERVL 4202 4736 -1028 468 284 6 17 chr9 74325496 74325679 -67945765 + HERVL LTR ERVL 5201 5383 -271 * 384 245 31 0 chr9 74325644 74325742 -67945702 - ERVL LTR ERVL -1672 4092 3992 * 382 278 0 19 chr9 74325771 74325879 -67945565 + HERVL LTR ERVL 2425 2530 -3124 368 289 118 15 chr9 74325910 74326045 -67945399 - ERVL LTR ERVL -1279 4485 4337 1152 295 12 6 chr9 74326060 74326402 -67945042 + HERVL LTR ERVL 2583 2926 -2838 759 205 12 18 chr9 74326412 74326578 -67944866 - MLT1D LTR MaLR -8 497 333 435 310 52 67 chr9 74326578 74326909 -67944535 - L2 LINE L2 -273 3040 2715 22 0 0 0 chr9 74327502 74327524 -67943920 + AT_rich Low_complexity Low_complexity 1 22 0 312 333 16 0 chr9 74327723 74327849 -67943595 - MARNA DNA Mariner -29 557 430 499 245 20 61 chr9 74328739 74328895 -67942549 - L1MC/D LINE L1 -614 5745 5584 3562 73 35 0 chr9 74328895 74329387 -67942057 - LTR10D LTR ERV1 0 513 5 499 245 20 61 chr9 74329387 74329409 -67942035 - L1MC/D LINE L1 -775 5584 5573 384 40 0 0 chr9 74329409 74329459 -67941985 + (TG)n Simple_repeat Simple_repeat 2 51 0 499 245 20 61 chr9 74329459 74329475 -67941969 - L1MC/D LINE L1 -786 5573 5558 341 324 29 7 chr9 74329634 74329770 -67941674 - L1MDa LINE L1 -6381 159 21 500 297 96 49 chr9 74331622 74332009 -67939435 + MLT1I LTR MaLR 1 405 -4 230 258 142 33 chr9 74332027 74332147 -67939297 - MIR SINE MIR 0 262 130 406 354 100 12 chr9 74332536 74332776 -67938668 + MIR SINE MIR 2 262 0 188 367 80 0 chr9 74332808 74332958 -67938486 - MIR SINE MIR -1 261 100 1829 245 94 6 chr9 74333438 74333936 -67937508 - MLT1F LTR MaLR 0 542 1 1566 209 0 14 chr9 74335451 74335738 -67935706 + AluJb SINE Alu 1 283 -29 220 348 45 18 chr9 74335860 74335972 -67935472 - MIR SINE MIR -118 144 30 337 336 70 33 chr9 74336464 74336708 -67934736 - L1ME4a LINE L1 -238 5883 5631 682 341 63 47 chr9 74336923 74337416 -67934028 + MLT1K LTR MaLR 86 586 -2 213 39 0 0 chr9 74337841 74337867 -67933577 + (CATATA)n Simple_repeat Simple_repeat 5 30 0 204 205 0 64 chr9 74338096 74338174 -67933270 + T-rich Low_complexity Low_complexity 2 74 0 25 51 0 0 chr9 74338593 74338632 -67932812 + AT_rich Low_complexity Low_complexity 1 39 0 226 119 119 0 chr9 74339509 74339551 -67931893 - Alu SINE Alu -168 134 88 2142 163 75 2 chr9 74340083 74340525 -67930919 - L1MA8 LINE L1 -3 6288 5815 563 158 142 33 chr9 74340553 74340673 -67930771 - FLAM_C SINE Alu 0 133 1 252 93 19 37 chr9 74340675 74340729 -67930715 - L1MA8 LINE L1 -339 5829 5777 30 45 0 0 chr9 74340733 74340777 -67930667 + AT_rich Low_complexity Low_complexity 1 44 0 2786 150 41 6 chr9 74340781 74341348 -67930096 - L1MA8 LINE L1 -521 5791 5208 198 0 0 0 chr9 74341976 74341998 -67929446 + (TA)n Simple_repeat Simple_repeat 2 23 0 450 333 10 0 chr9 74342733 74342883 -67928561 - MIR SINE MIR -64 144 38 180 348 130 11 chr9 74344507 74344599 -67926845 + MIR SINE MIR 6 108 -154 242 325 131 21 chr9 74344786 74344977 -67926467 + MIR SINE MIR 49 260 -2 306 0 0 0 chr9 74345845 74345879 -67925565 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 14344 31 0 0 chr9 74345915 74347652 -67923792 + L1P LINE L1 3667 5403 -743 25 0 0 0 chr9 74347762 74347787 -67923657 + AT_rich Low_complexity Low_complexity 1 25 0 1545 168 19 51 chr9 74347996 74348312 -67923132 - AluSg SINE Alu -2 308 3 228 331 67 22 chr9 74348980 74349158 -67922286 - HAL1 LINE L1 -959 1548 1363 315 252 0 54 chr9 74349216 74349363 -67922081 - HAL1 LINE L1 -1399 1108 970 1632 199 27 0 chr9 74351104 74351405 -67920039 + AluJb SINE Alu 1 309 -3 2022 137 7 0 chr9 74351638 74351945 -67919499 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr9 74354368 74354399 -67917045 + AT_rich Low_complexity Low_complexity 1 31 0 2413 101 55 0 chr9 74354587 74354932 -67916512 - THE1B LTR MaLR 0 364 1 196 265 0 20 chr9 74355432 74355481 -67915963 + L2 LINE L2 3225 3272 0 36 23 0 0 chr9 74356512 74356555 -67914889 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr9 74357945 74357968 -67913476 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr9 74358070 74358105 -67913339 + AT_rich Low_complexity Low_complexity 1 35 0 190 234 64 0 chr9 74358293 74358340 -67913104 - L3 LINE CR1 -37 1540 1491 411 297 28 18 chr9 74358452 74358845 -67912599 - L1M4c LINE L1 -4183 3384 2948 311 267 56 11 chr9 74358850 74358940 -67912504 - L1M LINE L1 -730 5391 5298 181 323 0 0 chr9 74359099 74359161 -67912283 - L3 LINE CR1 -453 1124 1063 29 60 0 0 chr9 74359617 74359667 -67911777 + AT_rich Low_complexity Low_complexity 1 50 0 261 0 0 0 chr9 74359847 74359876 -67911568 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2080 111 11 0 chr9 74359879 74360159 -67911285 - AluSp SINE Alu -30 283 1 2142 106 3 3 chr9 74360160 74360463 -67910981 - AluSc SINE Alu -6 303 1 303 270 56 11 chr9 74360533 74360622 -67910822 + L1M LINE L1 5299 5391 -730 9316 242 46 31 chr9 74360627 74361269 -67910175 + L1M1 LINE L1 2948 3579 -3986 1697 131 0 0 chr9 74361269 74361505 -67909939 + AluSq SINE Alu 62 297 -16 9316 242 46 31 chr9 74361505 74361653 -67909791 + L1M1 LINE L1 3579 3723 -3842 1890 114 30 0 chr9 74361653 74361917 -67909527 + AluSx SINE Alu 24 295 -17 9316 242 46 31 chr9 74361917 74364600 -67906844 + L1M1 LINE L1 3723 6528 -1037 1225 184 21 0 chr9 74364593 74364832 -67906612 + L1MB2 LINE L1 5892 6135 -36 * 2087 123 10 0 chr9 74365873 74366174 -67905270 - AluSx SINE Alu -8 304 1 208 356 11 23 chr9 74366423 74366510 -67904934 + MIR SINE MIR 63 148 -114 4088 159 63 17 chr9 74366520 74367663 -67903781 + L1MA7 LINE L1 4468 5659 -632 382 183 0 14 chr9 74367764 74367835 -67903609 + AluJ/FLAM SINE Alu 9 78 -224 3226 172 9 25 chr9 74367850 74368497 -67902947 + L1MA7 LINE L1 5655 6291 0 579 202 0 0 chr9 74368754 74368858 -67902586 - AluJb SINE Alu -29 283 180 1010 181 14 33 chr9 74368873 74369088 -67902356 - AluJb SINE Alu -97 215 5 328 313 104 18 chr9 74369788 74369951 -67901493 + MIR SINE MIR 66 242 -20 939 214 23 27 chr9 74370382 74370602 -67900842 - MER20 DNA MER1_type 0 219 1 811 150 0 50 chr9 74371364 74371524 -67899920 + L1MA10 LINE L1 6179 6330 -4 237 119 0 0 chr9 74371665 74371707 -67899737 + (TG)n Simple_repeat Simple_repeat 2 43 0 2860 159 22 4 chr9 74372054 74372611 -67898833 - Tigger3(Golem) DNA MER2_type -1 3028 2 26 0 0 0 chr9 74372998 74373024 -67898420 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr9 74373445 74373467 -67897977 + AT_rich Low_complexity Low_complexity 1 22 0 2520 58 0 3 chr9 74374053 74374362 -67897082 + AluY SINE Alu 1 308 -3 254 251 127 59 chr9 74375444 74375782 -67895662 + L1MEd LINE L1 745 1105 -5014 1571 229 68 12 chr9 74375803 74376396 -67895048 + L1MEd LINE L1 2852 3477 -2652 1031 285 114 25 chr9 74376405 74376808 -67894636 + LTR40b LTR ERVL 21 459 -3 3481 266 106 10 chr9 74376809 74378351 -67893093 + L1MEd LINE L1 3499 5189 -940 3284 234 57 62 chr9 74378371 74379377 -67892067 + L1MCb LINE L1 1 1010 -5735 2179 123 0 0 chr9 74379377 74379677 -67891767 + AluSq SINE Alu 1 300 -13 3284 234 57 62 chr9 74379677 74380347 -67891097 + L1MCb LINE L1 1010 1871 -4874 210 118 0 0 chr9 74380347 74380381 -67891063 + (TAA)n Simple_repeat Simple_repeat 2 35 0 3284 234 57 62 chr9 74380381 74380826 -67890618 + L1MCb LINE L1 1871 2317 -4428 783 235 0 6 chr9 74380833 74380995 -67890449 + AluJb SINE Alu 129 289 -23 3303 247 47 15 chr9 74381003 74381541 -67889903 + L1MCb LINE L1 2273 2792 -3772 2255 103 3 25 chr9 74381541 74381861 -67889583 - AluSp SINE Alu 0 313 1 3303 247 47 15 chr9 74381861 74382826 -67888618 + L1MCb LINE L1 2792 3824 -2740 540 242 27 21 chr9 74382869 74383055 -67888389 + L1MCb LINE L1 4818 5004 -1560 1613 226 40 48 chr9 74383289 74383744 -67887700 - MLT1D LTR MaLR -3 502 52 21 57 0 0 chr9 74383933 74383968 -67887476 + AT_rich Low_complexity Low_complexity 1 35 0 7516 27 9 0 chr9 74384686 74386207 -67885237 + L1PA3 LINE L1 4626 6155 0 238 67 44 0 chr9 74386234 74386279 -67885165 + A-rich Low_complexity Low_complexity 2 48 0 12230 66 4 1 chr9 74386407 74388022 -67883422 - L1P LINE L1 -4457 1689 70 9426 63 4 2 chr9 74388144 74389399 -67882045 + L1P LINE L1 982 2239 -3907 26 30 0 0 chr9 74390365 74390398 -67881046 + AT_rich Low_complexity Low_complexity 1 33 0 1191 130 5 0 chr9 74390398 74390590 -67880854 - L1PA5 LINE L1 -15 6139 5947 4654 219 36 2 chr9 74390690 74391843 -67879601 + L1 LINE L1 3730 4922 -1224 21 57 0 0 chr9 74392055 74392090 -67879354 + AT_rich Low_complexity Low_complexity 1 35 0 2638 232 12 31 chr9 74393737 74394895 -67876549 - L1PBa LINE L1 -5219 985 1 1614 213 15 34 chr9 74395024 74395432 -67876012 - L1 LINE L1 -1232 4914 4515 8592 222 18 22 chr9 74395435 74395772 -67875672 + L1PA16 LINE L1 1658 1995 -4854 2115 132 0 3 chr9 74395772 74396083 -67875361 + AluSq SINE Alu 1 310 -3 8592 222 18 22 chr9 74396083 74396124 -67875320 + L1PA16 LINE L1 1995 2035 -4814 1062 0 0 0 chr9 74396124 74396244 -67875200 + L1PA2 LINE L1 6036 6155 0 8592 222 18 22 chr9 74396244 74397362 -67874082 + L1PA16 LINE L1 2035 3156 -3693 1941 139 53 51 chr9 74397362 74397736 -67873708 - THE1C LTR MaLR 0 375 1 8592 222 18 22 chr9 74397736 74399480 -67871964 + L1PA16 LINE L1 3156 4891 -1958 637 276 58 31 chr9 74399680 74399969 -67871475 + Tigger1 DNA MER2_type 14 310 -2108 1869 226 11 36 chr9 74399969 74400408 -67871036 - MSTA LTR MaLR 0 428 1 1098 180 83 67 chr9 74400408 74400608 -67870836 + Tigger1 DNA MER2_type 308 516 -1902 1804 179 0 0 chr9 74400608 74400898 -67870546 - AluSx SINE Alu -20 292 3 1098 180 83 67 chr9 74400898 74400997 -67870447 + Tigger1 DNA MER2_type 516 612 -1806 1403 195 40 0 chr9 74401111 74401588 -67869856 + L1PA16 LINE L1 5736 6230 -639 1393 184 21 7 chr9 74401590 74401872 -67869572 + L1PA16 LINE L1 6584 6869 0 892 203 0 16 chr9 74401931 74402113 -67869331 + L1MB3 LINE L1 5935 6113 -70 280 77 0 77 chr9 74402116 74402168 -67869276 + LTR37A LTR ERV1 379 426 0 2475 66 0 0 chr9 74403602 74403907 -67867537 + AluY SINE Alu 7 311 0 615 237 0 0 chr9 74404711 74404829 -67866615 - FLAM_A SINE Alu -11 122 5 21 71 0 0 chr9 74405302 74405344 -67866100 + AT_rich Low_complexity Low_complexity 1 42 0 254 298 48 0 chr9 74405555 74405639 -67865805 - L2 LINE L2 -7 3306 3219 354 295 36 47 chr9 74406093 74406271 -67865173 + L1MC/D LINE L1 3153 3334 -2812 954 241 0 38 chr9 74406536 74406748 -67864696 + MER8 DNA MER2_type 33 236 -3 500 283 47 5 chr9 74406877 74407068 -67864376 + Charlie8 DNA MER1_type 65 263 -2154 228 277 0 0 chr9 74407059 74407124 -67864320 + Charlie8 DNA MER1_type 2352 2416 -1 * 24 0 0 0 chr9 74407766 74407790 -67863654 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr9 74408107 74408132 -67863312 + AT_rich Low_complexity Low_complexity 1 25 0 324 347 83 28 chr9 74408333 74408621 -67862823 + MER102b DNA MER1_type 2 305 -36 392 293 73 6 chr9 74408649 74408813 -67862631 + MER5B DNA MER1_type 2 176 -2 540 262 62 0 chr9 74408844 74408989 -67862455 + MER5A DNA MER1_type 1 154 -35 193 281 140 0 chr9 74409553 74409610 -67861834 + MIR3 SINE MIR 91 155 -53 200 337 12 23 chr9 74410092 74410178 -67861266 - MIR SINE MIR -155 107 23 198 364 107 21 chr9 74410350 74410490 -67860954 + MIR SINE MIR 109 260 -2 21 0 0 0 chr9 74410743 74410764 -67860680 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr9 74411301 74411328 -67860116 + AT_rich Low_complexity Low_complexity 1 27 0 470 209 0 0 chr9 74411570 74411656 -67859788 + L1MC/D LINE L1 5480 5565 -768 262 45 45 0 chr9 74411697 74411741 -67859703 + (TA)n Simple_repeat Simple_repeat 1 46 0 294 243 54 0 chr9 74411747 74411821 -67859623 + MLT2B1 LTR ERVL 403 480 -40 245 229 38 0 chr9 74412054 74412159 -67859285 + (TA)n Simple_repeat Simple_repeat 1 109 0 1057 222 145 10 chr9 74412177 74412487 -67858957 - MLT2B1 LTR ERVL -19 496 160 437 340 63 14 chr9 74412756 74413041 -67858403 + L1MC/D LINE L1 3515 3813 -2333 21 112 0 0 chr9 74413579 74413677 -67857767 + AT_rich Low_complexity Low_complexity 1 98 0 257 303 73 50 chr9 74414123 74414423 -67857021 + L1MC/D LINE L1 5518 5824 -1984 274 349 37 32 chr9 74414894 74415083 -67856361 + L2 LINE L2 2170 2359 -955 217 360 99 0 chr9 74415120 74415231 -67856213 + MIR SINE MIR 48 169 -93 2023 47 20 0 chr9 74415279 74415532 -67855912 - AluY SINE Alu -9 302 45 321 47 0 0 chr9 74415666 74415709 -67855735 + (TA)n Simple_repeat Simple_repeat 1 43 0 5736 40 0 0 chr9 74416182 74416877 -67854567 - L1P2 LINE L1 -1807 4339 3645 8125 51 3 14 chr9 74416877 74418218 -67853226 + L1P2 LINE L1 4329 5651 -503 817 136 71 14 chr9 74418319 74418459 -67852985 - THE1C LTR MaLR -227 148 1 331 234 53 0 chr9 74418466 74418560 -67852884 - L1ME1 LINE L1 -328 5838 5740 21 0 0 0 chr9 74418573 74418594 -67852850 + AT_rich Low_complexity Low_complexity 1 21 0 313 329 7 29 chr9 74418610 74418750 -67852694 - L1ME4a LINE L1 -216 5905 5769 189 0 0 0 chr9 74418813 74418834 -67852610 + (T)n Simple_repeat Simple_repeat 1 21 0 4826 126 68 51 chr9 74419777 74420208 -67851236 - MER4D LTR ERV1 -8 895 473 2138 112 3 0 chr9 74420208 74420503 -67850941 - AluSg SINE Alu -14 296 1 4826 126 68 51 chr9 74420503 74420951 -67850493 - MER4D LTR ERV1 -430 473 1 265 86 0 0 chr9 74421062 74421097 -67850347 + LTR7 LTR ERV1 1 35 -415 3276 55 0 59 chr9 74421166 74421642 -67849802 - LTR7 LTR ERV1 -2 448 1 2283 107 45 18 chr9 74421642 74422024 -67849420 - HERVH LTR ERV1 0 7713 7322 1330 135 18 14 chr9 74422022 74422244 -67849200 - HERVH LTR ERV1 -1894 5819 5597 * 4224 149 1 1 chr9 74422241 74422903 -67848541 - HERVH LTR ERV1 -2564 5149 4488 3345 119 0 6 chr9 74422905 74423410 -67848034 - HERVH LTR ERV1 -3720 3993 3492 870 155 20 0 chr9 74423400 74423548 -67847896 - HERVH LTR ERV1 -4423 3290 3140 * 19870 94 12 26 chr9 74423542 74426570 -67844874 - HERVH LTR ERV1 -4726 2987 1 3491 51 2 7 chr9 74426572 74427022 -67844422 - LTR7 LTR ERV1 -2 448 1 23 0 0 0 chr9 74427176 74427199 -67844245 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 74427588 74427609 -67843835 + AT_rich Low_complexity Low_complexity 1 21 0 207 108 0 27 chr9 74427613 74427650 -67843794 + (TAAAAA)n Simple_repeat Simple_repeat 5 40 0 4283 174 10 23 chr9 74430173 74431085 -67840359 - L1 LINE L1 -1814 4332 3433 1531 204 12 45 chr9 74431083 74431453 -67839991 + L1 LINE L1 4331 4687 -1459 * 2024 124 7 7 chr9 74431453 74431791 -67839653 + AluSx SINE Alu 1 312 0 1531 204 12 45 chr9 74431791 74431846 -67839598 + L1 LINE L1 4687 4742 -1404 1529 111 30 42 chr9 74431848 74432110 -67839334 + Tigger1 DNA MER2_type 12 270 -2148 3025 147 2 2 chr9 74432130 74432606 -67838838 + Tigger1 DNA MER2_type 915 1390 -1028 3959 229 29 10 chr9 74432606 74433650 -67837794 - L1PA13 LINE L1 -4223 2626 1539 292 321 38 19 chr9 74433666 74433825 -67837619 - L1PA13 LINE L1 -5334 1516 1355 266 286 0 0 chr9 74433850 74433920 -67837524 - L1PA13 LINE L1 -5306 1543 1474 182 143 0 57 chr9 74434209 74434244 -67837200 - L3b LINE CR1 -130 1453 1421 342 361 75 52 chr9 74434794 74435179 -67836265 - L1M2 LINE L1 -6452 397 4 593 89 22 0 chr9 74435186 74435276 -67836168 + Tigger1 DNA MER2_type 1377 1468 -950 681 185 73 0 chr9 74435378 74435529 -67835915 - MLT2B1 LTR ERVL -358 162 1 3618 169 7 33 chr9 74435530 74436218 -67835226 + L1MC1 LINE L1 5576 6245 -88 2876 166 15 4 chr9 74436229 74436699 -67834745 + MLT2B1 LTR ERVL 5 479 -41 523 237 29 14 chr9 74436752 74436891 -67834553 + ERVL-B1 LTR ERVL 3 143 -5621 * 12738 188 18 12 chr9 74436889 74439215 -67832229 + ERVL-B1 LTR ERVL 1354 3692 -2072 9659 182 37 16 chr9 74439215 74441048 -67830396 + ERVL-B1 LTR ERVL 3885 5756 -8 705 171 92 13 chr9 74441072 74441224 -67830220 + ERVL-B1 LTR ERVL 5 168 -352 1671 173 173 16 chr9 74441227 74441597 -67829847 + MSTA LTR MaLR 1 428 0 8763 160 7 36 chr9 74441599 74443223 -67828221 + MSTA-int LTR MaLR 3 1580 0 757 176 279 103 chr9 74443223 74443500 -67827944 + MSTA LTR MaLR 1 343 -32 2177 129 0 0 chr9 74443500 74443802 -67827642 - AluSx SINE Alu -10 302 1 757 176 279 103 chr9 74443802 74443843 -67827601 + MSTA LTR MaLR 343 375 0 1368 269 16 0 chr9 74443843 74444155 -67827289 + MLT2B1 LTR ERVL 164 480 -40 189 0 0 0 chr9 74444161 74444182 -67827262 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 233 206 0 16 chr9 74444181 74444244 -67827200 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 465 194 11 11 chr9 74444255 74444348 -67827096 - Tigger5 DNA MER2_type 0 2323 2231 343 200 0 0 chr9 74444353 74444408 -67827036 - Tigger5 DNA MER2_type -2268 55 1 458 188 0 42 chr9 74444484 74444580 -67826864 + L1MC1 LINE L1 6242 6333 0 21 0 0 0 chr9 74444890 74444911 -67826533 + AT_rich Low_complexity Low_complexity 1 21 0 453 285 110 55 chr9 74445162 74445689 -67825755 + HAL1b LINE L1 99 654 -694 24 32 0 0 chr9 74445854 74445885 -67825559 + AT_rich Low_complexity Low_complexity 1 31 0 180 172 31 16 chr9 74446023 74446087 -67825357 + (TA)n Simple_repeat Simple_repeat 2 66 0 565 313 86 22 chr9 74446661 74446929 -67824515 - MLT1I LTR MaLR -4 405 121 2802 6 0 13 chr9 74447139 74447452 -67823992 + AluYb8 SINE Alu 1 309 -9 22 0 0 0 chr9 74447534 74447556 -67823888 + AT_rich Low_complexity Low_complexity 1 22 0 2495 48 7 0 chr9 74447583 74447878 -67823566 + AluY SINE Alu 1 297 -14 653 293 59 78 chr9 74447995 74448687 -67822757 + L1MC/D LINE L1 3132 3810 -2336 2037 150 0 6 chr9 74448924 74449238 -67822206 - AluSx SINE Alu 0 312 1 252 318 62 40 chr9 74449261 74449636 -67821808 + L1MC/D LINE L1 4076 4468 -1678 420 20 0 0 chr9 74449636 74449685 -67821759 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 252 318 62 40 chr9 74449685 74449838 -67821606 + L1MC/D LINE L1 4468 4616 -1530 219 69 0 0 chr9 74449888 74449917 -67821527 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 306 274 135 38 chr9 74450523 74450789 -67820655 + L1MC/D LINE L1 5373 5664 -2144 930 205 83 122 chr9 74451015 74451451 -67819993 + L1MC/D LINE L1 5396 5818 -363 2550 44 3 0 chr9 74451481 74451779 -67819665 + AluY SINE Alu 1 299 -12 1175 227 26 26 chr9 74452045 74452393 -67819051 - L1MB8 LINE L1 0 6247 5900 235 236 100 18 chr9 74452802 74452912 -67818532 + L1MEd LINE L1 145 263 -5942 343 272 75 66 chr9 74453284 74453512 -67817932 + L1MEd LINE L1 2173 2402 -3994 692 182 33 0 chr9 74454117 74454238 -67817206 - FLAM_C SINE Alu -18 125 1 265 152 76 45 chr9 74454238 74454304 -67817140 - L1MCa LINE L1 -4820 1606 1539 2278 263 151 20 chr9 74454343 74455962 -67815482 - L1MB8 LINE L1 -918 5297 3466 18085 190 18 15 chr9 74455962 74461267 -67810177 + L1PA14 LINE L1 198 5530 -2054 1883 141 51 31 chr9 74461267 74461621 -67809823 - THE1C LTR MaLR 0 375 15 318 122 0 0 chr9 74461632 74461681 -67809763 - THE1C-int LTR MaLR -151 1429 1381 9410 143 43 5 chr9 74461685 74463207 -67808237 - THE1C-int LTR MaLR 0 1580 1 1846 178 27 27 chr9 74463207 74463577 -67807867 - THE1C LTR MaLR 0 375 6 6073 160 15 3 chr9 74463582 74465616 -67805828 + L1PA14 LINE L1 5526 7585 -14 350 279 48 0 chr9 74465625 74465772 -67805672 - L1M4 LINE L1 -1812 4334 4181 2265 268 90 34 chr9 74465787 74466182 -67805262 - L1MB8 LINE L1 -2748 3467 3095 2351 64 0 0 chr9 74466182 74466463 -67804981 - AluY SINE Alu -5 306 26 2265 268 90 34 chr9 74466463 74467664 -67803780 - L1MB8 LINE L1 -3120 3095 1814 299 203 143 38 chr9 74467677 74467691 -67803753 - L1MA10 LINE L1 -3 6331 6318 520 274 101 12 chr9 74467691 74467859 -67803585 - L1ME1 LINE L1 -5 6161 5979 4046 199 61 17 chr9 74467884 74469310 -67802134 - L1MC2 LINE L1 -195 6149 4662 721 279 94 10 chr9 74469321 74469619 -67801825 - L1MCb LINE L1 -5722 323 1 21 0 0 0 chr9 74469651 74469672 -67801772 + AT_rich Low_complexity Low_complexity 1 21 0 248 250 83 0 chr9 74469999 74470083 -67801361 - L1P4 LINE L1 -378 5783 5693 232 206 0 32 chr9 74470862 74470925 -67800519 + T-rich Low_complexity Low_complexity 1 61 0 379 218 30 10 chr9 74472026 74472127 -67799317 - Charlie1b DNA MER1_type 0 523 421 258 105 81 35 chr9 74472132 74472304 -67799140 + (TA)n Simple_repeat Simple_repeat 1 180 0 403 36 115 24 chr9 74472324 74472489 -67798955 + (TA)n Simple_repeat Simple_repeat 1 180 0 1214 230 71 15 chr9 74472516 74472911 -67798533 - Charlie1b DNA MER1_type -71 452 36 24 32 0 0 chr9 74473043 74473074 -67798370 + AT_rich Low_complexity Low_complexity 1 31 0 196 225 0 101 chr9 74473165 74473254 -67798190 - MIR SINE MIR -66 196 117 1818 169 0 0 chr9 74473631 74473945 -67797499 - L1PA13 LINE L1 -3 6160 5847 30 0 0 0 chr9 74475151 74475181 -67796263 + AT_rich Low_complexity Low_complexity 1 30 0 186 389 67 0 chr9 74476038 74476128 -67795316 - L2 LINE L2 -308 2964 2869 2901 72 0 3 chr9 74476805 74477191 -67794253 - L1PA5 LINE L1 -4 6150 5766 17406 167 24 15 chr9 74477291 74484329 -67787115 + L1MA3 LINE L1 623 7722 -2 1563 215 33 6 chr9 74485150 74485485 -67785959 - MER2 DNA MER2_type 0 344 1 333 0 0 0 chr9 74487131 74487168 -67784276 + (TG)n Simple_repeat Simple_repeat 2 38 0 34 24 0 0 chr9 74488513 74488554 -67782890 + AT_rich Low_complexity Low_complexity 1 41 0 240 267 0 0 chr9 74488554 74488614 -67782830 - L2 LINE L2 0 3313 3254 2050 141 3 0 chr9 74490612 74490916 -67780528 + AluSx SINE Alu 1 305 -7 189 348 26 35 chr9 74490950 74491065 -67780379 + MIR SINE MIR 87 200 -62 696 286 18 0 chr9 74491572 74491743 -67779701 + MER5A DNA MER1_type 7 180 -9 235 257 184 28 chr9 74491757 74491866 -67779578 + MIR SINE MIR 124 249 -13 247 320 176 0 chr9 74492118 74492243 -67779201 + MIR SINE MIR 116 262 0 2199 150 57 10 chr9 74492846 74493252 -67778192 + MSTB LTR MaLR 1 425 -1 1219 253 180 36 chr9 74493411 74493910 -67777534 - MLT1E2 LTR MaLR 0 626 56 204 216 0 0 chr9 74494108 74494159 -67777285 + GA-rich Low_complexity Low_complexity 1 51 0 269 145 16 0 chr9 74495222 74495284 -67776160 + CT-rich Low_complexity Low_complexity 2 64 0 264 306 105 8 chr9 74495421 74495545 -67775899 + MLT1K LTR MaLR 453 588 0 207 390 40 0 chr9 74495938 74496038 -67775406 + L2 LINE L2 3208 3311 -2 23 68 0 0 chr9 74496045 74496089 -67775355 + AT_rich Low_complexity Low_complexity 1 44 0 245 138 23 58 chr9 74496180 74496267 -67775177 + (TTATA)n Simple_repeat Simple_repeat 2 85 0 256 303 56 7 chr9 74496534 74496676 -67774768 - L1ME4a LINE L1 0 6121 5973 440 265 69 48 chr9 74496846 74497035 -67774409 - MIR SINE MIR -6 256 64 31 44 0 0 chr9 74497129 74497174 -67774270 + AT_rich Low_complexity Low_complexity 1 45 0 22 99 0 0 chr9 74497887 74497958 -67773486 + AT_rich Low_complexity Low_complexity 1 71 0 206 219 0 0 chr9 74498823 74498864 -67772580 + (TG)n Simple_repeat Simple_repeat 2 42 0 181 315 0 0 chr9 74499790 74499844 -67771600 - MIR SINE MIR -70 138 85 207 230 27 0 chr9 74500342 74500416 -67771028 + (TA)n Simple_repeat Simple_repeat 1 76 0 309 227 28 5 chr9 74500507 74500727 -67770717 + (TA)n Simple_repeat Simple_repeat 1 225 0 1978 226 57 49 chr9 74501236 74501891 -67769553 + L1MC4 LINE L1 7382 8041 -1 972 182 138 26 chr9 74502264 74502338 -67769106 + Tigger2 DNA MER2_type 2462 2526 -192 2162 100 0 0 chr9 74502338 74502637 -67768807 + AluSc SINE Alu 1 299 0 972 182 138 26 chr9 74502637 74502792 -67768652 + Tigger2 DNA MER2_type 2526 2718 0 218 289 24 48 chr9 74502818 74502901 -67768543 - L2 LINE L2 -18 3254 3174 2425 75 0 0 chr9 74502977 74503282 -67768162 + AluY SINE Alu 1 305 -6 838 273 128 7 chr9 74503698 74503995 -67767449 - MER46C DNA MER2_type 0 338 6 203 374 20 20 chr9 74504473 74504572 -67766872 - L2 LINE L2 -647 2667 2569 1912 94 66 7 chr9 74504886 74505172 -67766272 - AluSp SINE Alu -10 303 1 2475 146 39 12 chr9 74505366 74505798 -67765646 + MER65A LTR ERV1 1 444 -1 411 21 0 0 chr9 74505798 74505846 -67765598 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 271 234 0 16 chr9 74506735 74506799 -67764645 + MER6A DNA MER2_type -1 61 -544 1789 148 3 19 chr9 74506799 74507150 -67764294 - MER4A LTR ERV1 0 664 261 570 96 32 11 chr9 74507150 74507244 -67764200 - MER4A LTR ERV1 -566 98 3 3240 144 28 4 chr9 74507250 74507783 -67763661 + MER6A DNA MER2_type 58 603 -2 455 219 42 0 chr9 74507953 74508072 -67763372 - L1 LINE L1 -1449 4697 4574 277 206 0 52 chr9 74508093 74508190 -67763254 - L1MC4 LINE L1 -1337 6705 6614 256 154 0 77 chr9 74508195 74508273 -67763171 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 236 222 0 91 chr9 74508276 74508375 -67763069 - L1MC4 LINE L1 -1339 6703 6614 * 255 247 22 34 chr9 74508353 74508442 -67763002 + L1MC4 LINE L1 6616 6703 -1339 189 107 0 0 chr9 74508443 74508471 -67762973 + (TA)n Simple_repeat Simple_repeat 1 28 0 256 115 73 167 chr9 74508818 74508884 -67762560 - L1M LINE L1 -763 5405 5349 2190 107 52 20 chr9 74508884 74509231 -67762213 - L1PA10 LINE L1 -11 6157 5800 256 115 73 167 chr9 74509231 74509260 -67762184 - L1M LINE L1 -819 5349 5319 320 33 16 49 chr9 74509265 74509326 -67762118 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 8438 198 47 22 chr9 74509328 74511130 -67760314 - L1 LINE L1 -840 5306 3551 2285 115 0 0 chr9 74511130 74511443 -67760001 - AluSq SINE Alu 0 313 1 8438 198 47 22 chr9 74511443 74511630 -67759814 - L1 LINE L1 -2595 3551 3263 2135 106 7 7 chr9 74511630 74511931 -67759513 - AluSg1 SINE Alu -6 303 3 8438 198 47 22 chr9 74511931 74511953 -67759491 - L1 LINE L1 -2883 3263 3243 1798 197 11 8 chr9 74511972 74512338 -67759106 + L1MA9 LINE L1 5427 5793 -519 387 129 86 0 chr9 74512371 74512441 -67759003 + L1MA9 LINE L1 6153 6228 -84 579 211 66 0 chr9 74512505 74512657 -67758787 + L1MA9 LINE L1 6151 6312 0 211 236 18 0 chr9 74513345 74513400 -67758044 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 336 173 13 13 chr9 74515006 74515081 -67756363 + Tigger2 DNA MER2_type 1 75 -2643 689 219 19 13 chr9 74515117 74515272 -67756172 - MER8 DNA MER2_type -62 177 22 1707 83 9 18 chr9 74515985 74516213 -67755231 + AluSp SINE Alu 70 295 -18 21 0 0 0 chr9 74516596 74516617 -67754827 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr9 74517873 74517910 -67753534 + AT_rich Low_complexity Low_complexity 1 37 0 388 314 127 56 chr9 74517981 74518392 -67753052 + L1ME LINE L1 49 488 -5582 355 309 77 29 chr9 74519239 74519511 -67751933 - HAL1 LINE L1 -838 1669 1385 329 281 93 40 chr9 74519588 74519679 -67751765 - L1MEd LINE L1 -4924 1195 1110 2110 132 7 3 chr9 74519679 74519989 -67751455 - AluSx SINE Alu -1 311 1 329 281 93 40 chr9 74519989 74520370 -67751074 - L1MEd LINE L1 -5009 1110 698 1866 116 60 28 chr9 74520381 74520699 -67750745 + MER52C LTR ERV1 951 1278 0 643 365 29 18 chr9 74520715 74521096 -67750348 - L1MEd LINE L1 -5460 659 275 265 372 116 15 chr9 74521365 74521564 -67749880 + L2 LINE L2 2685 2903 -411 404 293 40 10 chr9 74521847 74521946 -67749498 - L2 LINE L2 0 3272 3171 247 344 0 0 chr9 74521961 74522025 -67749419 + L2 LINE L2 3207 3270 -2 215 234 13 0 chr9 74523292 74523369 -67748075 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 6915 66 0 0 chr9 74523937 74524901 -67746543 - L1PA6 LINE L1 -7 6147 5188 23 0 0 0 chr9 74525254 74525277 -67746167 + AT_rich Low_complexity Low_complexity 1 23 0 223 264 0 0 chr9 74525670 74525723 -67745721 + CT-rich Low_complexity Low_complexity 1 53 0 532 241 9 0 chr9 74526149 74526265 -67745179 - MIR SINE MIR -10 252 136 1361 203 65 0 chr9 74526451 74526596 -67744848 - AluJo SINE Alu -31 281 147 396 0 0 0 chr9 74526596 74526640 -67744804 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1361 203 65 0 chr9 74526640 74526755 -67744689 - AluJo SINE Alu -165 147 4 195 354 0 13 chr9 74526880 74526959 -67744485 + L2 LINE L2 2997 3074 -198 216 0 0 0 chr9 74527583 74527607 -67743837 + (TA)n Simple_repeat Simple_repeat 2 25 0 249 308 0 0 chr9 74528248 74528326 -67743118 + CT-rich Low_complexity Low_complexity 3 80 0 221 400 0 0 chr9 74528585 74528680 -67742764 + MIR SINE MIR 5 99 -163 1530 236 45 43 chr9 74529067 74529486 -67741958 - MLT1E LTR MaLR -2 591 172 635 231 8 0 chr9 74529587 74529708 -67741736 - MLT1E LTR MaLR -421 172 51 498 364 98 27 chr9 74529771 74530370 -67741074 + L2 LINE L2 269 910 -2404 511 295 22 0 chr9 74530694 74530833 -67740611 - MIR SINE MIR 0 262 121 183 153 0 51 chr9 74530981 74531040 -67740404 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 28 29 0 0 chr9 74531082 74531117 -67740327 + AT_rich Low_complexity Low_complexity 1 35 0 1867 162 71 0 chr9 74531929 74532280 -67739164 - L1MB1 LINE L1 -39 6129 5754 413 367 16 27 chr9 74532506 74532694 -67738750 + MER115 DNA AcHobo 251 436 -257 5129 124 7 0 chr9 74532767 74533533 -67737911 - L1PA15 LINE L1 -13 6152 5382 6916 245 41 13 chr9 74533541 74536082 -67735362 - L1PA13 LINE L1 -2780 4017 1298 1172 132 0 17 chr9 74536082 74536256 -67735188 - LTR8 LTR ERV1 0 691 521 1077 169 12 43 chr9 74536375 74536629 -67734815 - SVA Other Other -708 678 433 3078 137 18 62 chr9 74536660 74537208 -67734236 - LTR8 LTR ERV1 -167 524 1 2773 201 22 14 chr9 74537317 74538302 -67733142 - L1M3 LINE L1 -402 5766 4776 1509 214 25 33 chr9 74538302 74538666 -67732778 - MLT1A1 LTR MaLR -4 361 1 2773 201 22 14 chr9 74538666 74538705 -67732739 - L1M3 LINE L1 -1392 4776 4739 919 209 38 9 chr9 74538705 74538915 -67732529 - Tigger1 DNA MER2_type 0 2418 2203 2335 140 8 16 chr9 74538915 74539293 -67732151 - THE1C LTR MaLR 0 375 1 1752 161 57 21 chr9 74539293 74539628 -67731816 - THE1C-int LTR MaLR 0 1580 1234 1858 28 9 5 chr9 74639628 74639845 -67631599 + AluY SINE Alu 84 301 -10 352 259 174 52 chr9 74639849 74640212 -67631232 + L1ME4a LINE L1 5611 6017 -104 1083 140 3 6 chr9 74640361 74640667 -67630777 + (GGAA)n Simple_repeat Simple_repeat 3 306 0 1229 210 29 7 chr9 74640812 74641088 -67630356 + MLT1C LTR MaLR 186 467 0 306 0 0 0 chr9 74641201 74641235 -67630209 + (TC)n Simple_repeat Simple_repeat 1 34 0 351 141 0 0 chr9 74641758 74641822 -67629622 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 247 260 55 71 chr9 74642677 74642804 -67628640 + L2 LINE L2 2139 2263 -1051 570 196 10 0 chr9 74643395 74643497 -67627947 - U13 snRNA snRNA -1 103 1 24 91 0 0 chr9 74643883 74643949 -67627495 + AT_rich Low_complexity Low_complexity 1 66 0 434 73 0 15 chr9 74644349 74644417 -67627027 + (TG)n Simple_repeat Simple_repeat 1 67 0 738 166 101 96 chr9 74645423 74645513 -67625931 - MER3 DNA MER1_type -2 207 119 2155 105 10 7 chr9 74645513 74645819 -67625625 - AluSx SINE Alu -2 310 4 738 166 101 96 chr9 74645819 74645927 -67625517 - MER3 DNA MER1_type -90 119 8 402 236 186 7 chr9 74645948 74646088 -67625356 - MER5A DNA MER1_type -6 183 19 6086 63 4 0 chr9 74646978 74647697 -67623747 + L1PA6 LINE L1 5431 6152 -2 326 192 116 75 chr9 74647715 74647861 -67623583 - L1ME4a LINE L1 -60 6061 5910 375 141 0 0 chr9 74648200 74648278 -67623166 + (G)n Simple_repeat Simple_repeat 1 78 0 250 45 45 0 chr9 74649396 74649440 -67622004 + (TC)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr9 74649493 74649522 -67621922 + AT_rich Low_complexity Low_complexity 1 29 0 1540 146 14 41 chr9 74649529 74649823 -67621621 + L1MB7 LINE L1 5883 6168 -16 453 36 0 0 chr9 74651312 74651367 -67620077 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1620 115 172 0 chr9 74651367 74651611 -67619833 - AluSx SINE Alu -26 286 1 4161 179 24 32 chr9 74652631 74653415 -67618029 - L1 LINE L1 -1862 4284 3506 196 30 61 0 chr9 74653415 74653448 -67617996 + (TTG)n Simple_repeat Simple_repeat 1 35 0 4161 179 24 32 chr9 74653448 74653513 -67617931 - L1 LINE L1 -2640 3506 3442 1994 100 4 11 chr9 74653613 74653893 -67617551 - L1P4 LINE L1 -415 5751 5474 1510 231 62 42 chr9 74655093 74655574 -67615870 - L1ME3A LINE L1 -158 6012 5522 2321 101 10 0 chr9 74655775 74656083 -67615361 + AluSx SINE Alu 1 311 -1 257 220 9 55 chr9 74656986 74657095 -67614349 + T-rich Low_complexity Low_complexity 1 104 0 512 220 53 33 chr9 74657161 74657311 -67614133 - MER103 DNA DNA 0 166 14 1159 281 37 41 chr9 74658042 74658125 -67613319 - L1ME3A LINE L1 -224 5946 5864 1488 202 84 16 chr9 74658125 74658267 -67613177 + MER2 DNA MER2_type 1 132 -212 2269 91 3 0 chr9 74658267 74658554 -67612890 + AluSp SINE Alu 12 299 -14 1488 202 84 16 chr9 74658554 74658733 -67612711 + MER2 DNA MER2_type 132 344 0 1159 281 37 41 chr9 74658733 74659215 -67612229 - L1ME3A LINE L1 -306 5864 5383 216 0 0 0 chr9 74659219 74659243 -67612201 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 249 288 38 0 chr9 74659540 74659620 -67611824 - MER117 DNA MER1_type -51 146 64 722 258 37 26 chr9 74660001 74660191 -67611253 - MIR SINE MIR -8 254 63 470 313 185 0 chr9 74660558 74660769 -67610675 + MIR SINE MIR 13 262 0 399 274 20 48 chr9 74662546 74662692 -67608752 - L2 LINE L2 -40 3273 3132 2207 94 0 56 chr9 74663353 74663673 -67607771 + AluY SINE Alu 1 302 -9 619 277 118 57 chr9 74663776 74664267 -67607177 + LTR33 LTR ERVL 1 521 0 1213 250 25 25 chr9 74664388 74664784 -67606660 - L1ME3A LINE L1 -768 5378 4983 1318 150 29 12 chr9 74664784 74665024 -67606420 - L1MB7 LINE L1 0 6184 5941 181 292 115 31 chr9 74665433 74665529 -67605915 + L2 LINE L2 1182 1285 -2029 186 43 0 0 chr9 74665706 74665729 -67605715 + (TG)n Simple_repeat Simple_repeat 2 24 0 289 316 172 14 chr9 74665877 74666086 -67605358 + MIR SINE MIR 20 261 -1 193 177 0 48 chr9 74666147 74666209 -67605235 + (TATG)n Simple_repeat Simple_repeat 1 59 0 872 282 61 39 chr9 74666219 74666294 -67605150 - L1ME LINE L1 -403 5767 5695 2271 108 0 3 chr9 74666294 74666589 -67604855 - AluSx SINE Alu -18 294 1 872 282 61 39 chr9 74666589 74666971 -67604473 - L1ME LINE L1 -475 5695 5295 180 158 0 0 chr9 74666995 74667033 -67604411 + (TA)n Simple_repeat Simple_repeat 2 39 0 234 299 55 48 chr9 74667458 74667586 -67603858 - MER5A DNA MER1_type -27 151 30 180 282 56 70 chr9 74667537 74667608 -67603836 + MER5A DNA MER1_type 120 189 0 * 374 232 12 24 chr9 74668080 74668162 -67603282 - MER5A DNA MER1_type -98 91 11 1485 129 0 17 chr9 74668755 74668995 -67602449 - AluSq SINE Alu -9 304 69 269 118 26 26 chr9 74669298 74669374 -67602070 + (CA)n Simple_repeat Simple_repeat 1 76 0 438 158 18 35 chr9 74669388 74669559 -67601885 + (CA)n Simple_repeat Simple_repeat 2 169 0 5879 130 7 15 chr9 74669722 74670820 -67600624 - L1PB2 LINE L1 -8 6143 5053 392 294 173 45 chr9 74670878 74671473 -67599971 + L2 LINE L2 1705 2375 -939 275 264 91 0 chr9 74671515 74671625 -67599819 - MER112 DNA MER1_type 0 260 141 548 209 8 47 chr9 74671657 74671786 -67599658 + L2 LINE L2 3189 3312 -1 291 220 0 0 chr9 74671786 74671845 -67599599 - MER112 DNA MER1_type -189 71 13 573 72 0 0 chr9 74672189 74672272 -67599172 + (GA)n Simple_repeat Simple_repeat 2 84 0 2303 86 0 0 chr9 74672484 74672764 -67598680 + AluSx SINE Alu 24 303 -9 219 301 86 0 chr9 74672781 74672874 -67598570 + MIR SINE MIR 162 262 0 * 370 342 33 0 chr9 74672861 74672981 -67598463 - MIR SINE MIR -99 163 40 664 283 164 20 chr9 74673802 74674156 -67597288 - MLT1I LTR MaLR -4 405 1 323 298 146 34 chr9 74674163 74674368 -67597076 - MIR SINE MIR -33 229 2 2235 82 0 4 chr9 74676252 74676586 -67594858 - AluSg SINE Alu 0 333 1 539 320 26 5 chr9 74677051 74677245 -67594199 + MIR SINE MIR 54 251 -11 194 250 31 0 chr9 74678475 74678539 -67592905 - MIR SINE MIR -85 177 112 237 189 19 0 chr9 74678804 74678857 -67592587 - MIR SINE MIR -126 82 29 468 254 215 24 chr9 74679961 74680291 -67591153 + L2 LINE L2 1712 2104 -1210 417 254 133 8 chr9 74680329 74680569 -67590875 + L1ME4a LINE L1 5675 5944 -177 276 149 0 0 chr9 74680570 74680617 -67590827 + (CA)n Simple_repeat Simple_repeat 2 48 0 970 158 0 55 chr9 74680647 74680830 -67590614 - AluJo SINE Alu -139 173 1 449 223 18 18 chr9 74681728 74681840 -67589604 - MER103 DNA DNA -1 165 54 452 207 57 36 chr9 74684338 74684478 -67586966 + MER103 DNA DNA 22 164 -2 279 0 0 0 chr9 74684620 74684651 -67586793 + (TG)n Simple_repeat Simple_repeat 1 31 0 189 121 0 0 chr9 74684651 74684684 -67586760 + (GA)n Simple_repeat Simple_repeat 2 34 0 4321 189 28 13 chr9 74684864 74685835 -67585609 - L1 LINE L1 -2737 4111 3127 1121 314 81 7 chr9 74686476 74686884 -67584560 - L1 LINE L1 -6399 450 13 1615 226 85 7 chr9 74686891 74687337 -67584107 + L1ME3A LINE L1 5410 5890 -280 1220 185 52 13 chr9 74687337 74687676 -67583768 + MSTC LTR MaLR 1 428 0 333 271 0 0 chr9 74687676 74687761 -67583683 + L1ME3A LINE L1 5886 5970 -200 881 273 86 27 chr9 74687773 74688180 -67583264 + L1ME3 LINE L1 5521 5951 -211 1726 136 56 0 chr9 74688958 74689245 -67582199 + L1PB4 LINE L1 5841 6143 -13 26 0 0 0 chr9 74689245 74689271 -67582173 + AT_rich Low_complexity Low_complexity 1 26 0 1848 121 8 0 chr9 74689273 74689522 -67581922 - AluJb SINE Alu -23 289 39 2176 109 3 0 chr9 74689755 74690049 -67581395 + AluSc SINE Alu 1 295 -14 317 282 55 60 chr9 74690627 74690992 -67580452 - L1M4 LINE L1 -1487 4659 4297 2289 114 0 7 chr9 74691770 74692078 -67579366 + AluSq SINE Alu 1 306 -7 1192 139 0 0 chr9 74692366 74692531 -67578913 + AluSg/x SINE Alu 133 297 -13 356 264 39 31 chr9 74692833 74692962 -67578482 + L1ME LINE L1 6 135 -5935 631 289 123 16 chr9 74693171 74693489 -67577955 - L1M4 LINE L1 -2623 3523 3172 650 265 105 49 chr9 74693490 74693796 -67577648 + L1ME1 LINE L1 5825 6147 -19 1158 52 0 0 chr9 74693801 74693958 -67577486 - AluY SINE Alu 0 311 155 23 0 0 0 chr9 74693962 74693985 -67577459 + AT_rich Low_complexity Low_complexity 1 23 0 2032 121 3 3 chr9 74694347 74694636 -67576808 - AluSg SINE Alu -21 289 1 268 284 64 18 chr9 74694636 74694745 -67576699 + L1MC/D LINE L1 5630 5743 -2065 2010 134 0 3 chr9 74694777 74695108 -67576336 + AluSx SINE Alu 1 330 0 185 347 0 0 chr9 74695863 74695935 -67575509 + MIR SINE MIR 76 147 -115 1938 147 7 0 chr9 74696117 74696402 -67575042 + AluSx SINE Alu 5 291 -21 2071 103 0 11 chr9 74696805 74697087 -67574357 - AluSc SINE Alu -17 292 14 2170 89 33 26 chr9 74698463 74698765 -67572679 + AluSp SINE Alu 1 304 -9 812 261 164 65 chr9 74700597 74700821 -67570623 - MLT1H1 LTR MaLR 0 555 355 678 65 9 19 chr9 74700821 74700928 -67570516 + (TC)n Simple_repeat Simple_repeat 1 106 0 812 261 164 65 chr9 74700928 74701208 -67570236 - MLT1H1 LTR MaLR -200 355 1 447 199 84 23 chr9 74702588 74702719 -67568725 - MIR SINE MIR 0 262 124 24 32 0 0 chr9 74703116 74703147 -67568297 + AT_rich Low_complexity Low_complexity 1 31 0 1418 127 70 0 chr9 74703149 74703393 -67568051 - L1PA16 LINE L1 -9 6157 5897 991 171 11 6 chr9 74703531 74703712 -67567732 + MER5A DNA MER1_type 6 187 -2 2111 209 31 25 chr9 74703759 74704145 -67567299 - L1MB7 LINE L1 -56 6128 5737 2172 121 3 0 chr9 74704145 74704450 -67566994 - AluSx SINE Alu -6 306 1 2111 209 31 25 chr9 74704450 74704541 -67566903 - L1MB7 LINE L1 -447 5737 5648 2309 108 0 0 chr9 74704644 74704949 -67566495 - AluY SINE Alu -6 305 1 366 232 232 0 chr9 74704954 74705066 -67566378 + MER5A DNA MER1_type 51 188 -1 213 291 39 10 chr9 74705402 74705505 -67565939 + MIR SINE MIR 84 189 -73 2548 168 74 12 chr9 74705526 74705566 -67565878 - MLT2B1 LTR ERVL -2 518 482 402 100 0 0 chr9 74705566 74705626 -67565818 + (CA)n Simple_repeat Simple_repeat 2 61 0 2548 168 74 12 chr9 74705626 74706073 -67565371 - MLT2B1 LTR ERVL -38 482 1 256 253 12 78 chr9 74706390 74706582 -67564862 + Charlie8 DNA MER1_type 156 1417 -1000 547 69 0 23 chr9 74707680 74707767 -67563677 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 237 279 43 75 chr9 74707835 74707996 -67563448 + MIR SINE MIR 9 164 -98 285 29 0 0 chr9 74708347 74708381 -67563063 + (GA)n Simple_repeat Simple_repeat 1 34 0 747 173 8 15 chr9 74709529 74709662 -67561782 + FLAM_C SINE Alu 1 132 -11 400 301 146 19 chr9 74709856 74710178 -67561266 + L2 LINE L2 2947 3309 -4 725 209 8 0 chr9 74710236 74710365 -67561079 - FLAM_A SINE Alu -3 130 1 188 173 53 80 chr9 74710758 74710833 -67560611 - L2 LINE L2 -191 3081 3009 498 285 57 6 chr9 74711610 74711768 -67559676 + MIR SINE MIR 31 196 -66 529 73 0 49 chr9 74711838 74711920 -67559524 + L1PA11 LINE L1 6095 6172 -2 979 202 0 6 chr9 74712221 74712394 -67559050 + MER58A DNA MER1_type 37 208 -16 2102 120 36 3 chr9 74712610 74712911 -67558533 - AluSx SINE Alu 0 312 2 869 272 37 20 chr9 74714111 74714409 -67557035 - LTR16C LTR ERVL 0 491 189 877 137 0 0 chr9 74715157 74715281 -67556163 + AluSx SINE Alu 1 124 -189 541 89 68 13 chr9 74715281 74715731 -67555713 + (TA)n Simple_repeat Simple_repeat 1 474 0 1206 114 0 84 chr9 74715731 74715933 -67555511 + AluSx SINE Alu 123 307 -3 401 262 257 5 chr9 74716004 74716191 -67555253 - MIR SINE MIR -2 260 27 2622 145 34 0 chr9 74716349 74716762 -67554682 - MSTA LTR MaLR 0 428 2 1613 186 68 120 chr9 74717014 74717445 -67553999 - MER119 DNA MER1_type 0 583 182 828 133 31 0 chr9 74717445 74717573 -67553871 + FLAM_C SINE Alu 2 133 0 1613 186 68 120 chr9 74717573 74717667 -67553777 - MER119 DNA MER1_type -401 182 85 289 176 32 72 chr9 74718010 74718135 -67553309 - MER113 DNA MER1_type? -397 124 5 2373 108 0 0 chr9 74718653 74718958 -67552486 + AluSq SINE Alu 1 305 -8 423 301 82 64 chr9 74719400 74719687 -67551757 + MLT1I LTR MaLR 75 370 -39 2119 104 0 69 chr9 74719687 74720005 -67551439 + AluSx SINE Alu 1 296 -16 423 301 82 64 chr9 74720005 74720046 -67551398 + MLT1I LTR MaLR 370 409 0 697 227 74 0 chr9 74720336 74720512 -67550932 - MER3 DNA MER1_type -19 190 2 4189 149 108 25 chr9 74721407 74722246 -67549198 + L1MC2 LINE L1 5434 6342 -2 342 0 0 0 chr9 74722324 74722362 -67549082 + (CA)n Simple_repeat Simple_repeat 1 38 0 1215 37 0 0 chr9 74722990 74723126 -67548318 + AluY SINE Alu 157 292 -19 405 281 8 25 chr9 74724017 74724138 -67547306 - L2 LINE L2 -7 3306 3188 370 338 44 10 chr9 74724193 74724397 -67547047 + L3 LINE CR1 1205 1415 -162 1098 204 111 77 chr9 74724910 74725287 -67546157 + MLT1E2 LTR MaLR 11 400 -226 245 281 167 62 chr9 74725686 74725896 -67545548 + MER102a DNA MER1_type 98 329 -1 1090 47 0 0 chr9 74727110 74727238 -67544206 + L1PA4 LINE L1 6025 6152 -3 322 269 0 13 chr9 74728199 74728277 -67543167 - MIR SINE MIR -139 123 47 3233 201 29 80 chr9 74728382 74729329 -67542115 + L1M4 LINE L1 3969 4866 -1280 481 259 94 67 chr9 74729626 74729850 -67541594 - MIR SINE MIR -5 257 28 501 211 0 0 chr9 74729912 74730011 -67541433 - MIR3 SINE MIR -6 202 103 1061 289 65 38 chr9 74730070 74730468 -67540976 - MLT1I LTR MaLR 0 409 1 2493 87 3 0 chr9 74731462 74731773 -67539671 - AluSq SINE Alu 0 313 2 283 305 11 0 chr9 74732258 74732353 -67539091 - MIR SINE MIR 0 262 167 279 140 0 0 chr9 74732629 74732679 -67538765 + (CA)n Simple_repeat Simple_repeat 1 50 0 390 227 62 78 chr9 74733237 74733479 -67537965 + MER102a DNA MER1_type 92 329 -1 24 53 0 0 chr9 74733927 74733965 -67537479 + AT_rich Low_complexity Low_complexity 1 38 0 2888 100 50 9 chr9 74735256 74735675 -67535769 - L1PB3 LINE L1 -2 6152 5717 3902 111 35 6 chr9 74735937 74736449 -67534995 - MER1A DNA MER1_type 0 527 1 322 297 20 0 chr9 74736832 74736933 -67534511 + MIR SINE MIR 47 149 -113 2218 104 7 13 chr9 74737316 74737625 -67533819 - AluJb SINE Alu -5 307 1 357 263 53 53 chr9 74738262 74738395 -67533049 - MER5A DNA MER1_type -41 148 16 297 0 0 0 chr9 74738955 74738988 -67532456 + (TG)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr9 74739278 74739298 -67532146 + (A)n Simple_repeat Simple_repeat 1 20 0 1234 232 71 67 chr9 74739538 74739987 -67531457 + LTR37B LTR ERV1 16 466 -2 1889 104 77 0 chr9 74740905 74741195 -67530249 - AluSx SINE Alu 0 311 2 1744 151 36 23 chr9 74741963 74742267 -67529177 + AluSq SINE Alu 1 308 -5 2461 142 4 9 chr9 74742823 74743464 -67527980 - L1P4 LINE L1 -560 5606 4971 450 157 0 0 chr9 74743489 74743572 -67527872 + (CA)n Simple_repeat Simple_repeat 2 84 0 919 219 5 0 chr9 74745833 74746048 -67525396 - L1P LINE L1 -961 5185 4970 288 145 43 51 chr9 74746477 74746594 -67524850 + (TA)n Simple_repeat Simple_repeat 2 117 0 1981 153 0 0 chr9 74747827 74748128 -67523316 + AluSx SINE Alu 1 301 -11 1632 172 0 8 chr9 74748669 74748936 -67522508 - AluJo SINE Alu -14 298 34 2220 141 125 10 chr9 74749121 74749505 -67521939 - MSTA LTR MaLR 0 428 1 2302 87 29 26 chr9 74750480 74750829 -67520615 + AluSp SINE Alu 1 350 0 239 183 141 0 chr9 74751024 74751095 -67520349 - HsTC2 DNA Tc2 -1814 84 4 276 30 0 0 chr9 74751459 74751492 -67519952 + (CA)n Simple_repeat Simple_repeat 1 33 0 528 46 46 0 chr9 74751785 74751872 -67519572 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 711 292 39 30 chr9 74752062 74752394 -67519050 - L1MC4a LINE L1 -1867 5941 5607 241 333 89 36 chr9 74752663 74752888 -67518556 - L3 LINE CR1 -238 1339 1103 25 0 0 0 chr9 74753478 74753503 -67517941 + AT_rich Low_complexity Low_complexity 1 25 0 189 333 16 0 chr9 74753587 74753650 -67517794 + L2 LINE L2 3151 3214 -58 248 224 55 145 chr9 74753957 74754058 -67517386 - L2 LINE L2 0 3313 3204 2228 112 0 7 chr9 74754058 74754363 -67517081 - AluSq SINE Alu -10 303 1 248 224 55 145 chr9 74754363 74754377 -67517067 - L2 LINE L2 -109 3204 3190 2979 126 9 2 chr9 74754377 74754807 -67516637 + L1PA16 LINE L1 5730 6162 -4 248 224 55 145 chr9 74754807 74754945 -67516499 - L2 LINE L2 -123 3190 3082 2608 36 7 3 chr9 74756410 74756714 -67514730 - AluY SINE Alu -6 305 1 2418 90 59 14 chr9 74756883 74757237 -67514207 - L1PB1 LINE L1 0 6151 5782 705 76 64 18 chr9 74757255 74757426 -67514018 + (TA)n Simple_repeat Simple_repeat 1 179 0 4601 154 14 9 chr9 74757426 74758811 -67512633 - L1PB1 LINE L1 -360 5791 4396 369 0 0 0 chr9 74758811 74758852 -67512592 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 4601 154 14 9 chr9 74758852 74758908 -67512536 - L1PB1 LINE L1 -1755 4396 4342 334 215 146 46 chr9 74759489 74759619 -67511825 + MIR SINE MIR 29 171 -91 1175 264 61 3 chr9 74759619 74759929 -67511515 - MER58B DNA MER1_type 0 341 14 349 346 33 29 chr9 74761784 74762024 -67509420 + L2 LINE L2 2150 2390 -924 1407 209 46 40 chr9 74762058 74762408 -67509036 + MLT1H1 LTR MaLR 203 554 -1 194 162 0 27 chr9 74764296 74764333 -67507111 + MIR SINE MIR 116 151 -111 452 283 83 17 chr9 74765088 74765298 -67506146 - MIR SINE MIR -32 230 8 3301 170 104 45 chr9 74765568 74766425 -67505019 - L1MC4a LINE L1 -5 7803 6897 181 245 0 0 chr9 74766429 74766478 -67504966 + MIR SINE MIR 83 131 -77 300 296 61 0 chr9 74766673 74766771 -67504673 + MIR SINE MIR 25 128 -134 225 308 81 81 chr9 74766836 74767008 -67504436 + MER5A DNA MER1_type 18 189 0 615 201 182 0 chr9 74767830 74767984 -67503460 - L1MB5 LINE L1 -6 6168 5987 1973 157 0 7 chr9 74767989 74768294 -67503150 - AluJb SINE Alu -9 303 1 283 234 0 16 chr9 74768882 74768946 -67502498 + MER112 DNA MER1_type 2 64 -196 219 36 0 0 chr9 74768948 74768976 -67502468 + (CA)n Simple_repeat Simple_repeat 2 29 0 641 273 66 20 chr9 74769139 74769337 -67502107 - MIR SINE MIR -46 216 10 330 160 187 0 chr9 74769559 74769634 -67501810 + MIR3 SINE MIR 82 170 -38 384 259 182 28 chr9 74770915 74771058 -67500386 + MER5A DNA MER1_type 25 189 0 3184 117 35 0 chr9 74772427 74772887 -67498557 - MER1A DNA MER1_type 0 529 54 197 95 0 24 chr9 74772963 74773005 -67498439 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 352 345 14 28 chr9 74773851 74773996 -67497448 + MIR SINE MIR 21 163 -99 225 346 87 0 chr9 74774026 74774130 -67497314 - L2 LINE L2 -2 3311 3199 2255 76 3 17 chr9 74774366 74774667 -67496777 - L1PA13 LINE L1 0 6163 5867 365 244 130 0 chr9 74775001 74775124 -67496320 - MIR SINE MIR 0 262 124 555 271 51 114 chr9 74775385 74775717 -67495727 + MLT1L LTR MaLR 1 311 -304 800 139 0 9 chr9 74778024 74778139 -67493305 - FLAM_C SINE Alu -16 117 4 194 220 50 90 chr9 74778225 74778325 -67493119 + MIR SINE MIR 121 216 -46 2094 144 0 3 chr9 74778401 74778713 -67492731 - AluSx SINE Alu -1 311 1 213 114 0 0 chr9 74779782 74779795 -67491649 + (TTA)n Simple_repeat Simple_repeat 2 14 -22 2870 94 13 11 chr9 74779795 74780169 -67491275 + THE1C LTR MaLR 1 375 0 213 114 0 0 chr9 74780169 74780190 -67491254 + (TTA)n Simple_repeat Simple_repeat 13 36 0 219 225 67 67 chr9 74781354 74781443 -67490001 + MIR3 SINE MIR 82 170 -38 2168 126 7 3 chr9 74781463 74781773 -67489671 + AluSx SINE Alu 2 312 0 353 245 157 27 chr9 74781808 74781955 -67489489 + L2 LINE L2 2888 3053 -219 1248 209 171 23 chr9 74781997 74782408 -67489036 - MLT1D LTR MaLR 0 467 7 287 198 62 31 chr9 74782708 74782804 -67488640 + L1MC4a LINE L1 6071 6169 -1639 471 292 86 72 chr9 74783172 74783324 -67488120 - LTR16C LTR ERVL 0 491 343 1475 176 59 96 chr9 74783324 74783711 -67487733 + MLT1A2 LTR MaLR 1 373 -1 471 292 86 72 chr9 74783711 74783907 -67487537 - LTR16C LTR ERVL -148 343 138 261 293 49 12 chr9 74785292 74785374 -67486070 - MIR3 SINE MIR -27 181 97 198 0 0 0 chr9 74785428 74785450 -67485994 + (T)n Simple_repeat Simple_repeat 1 22 0 1167 128 56 0 chr9 74785501 74785696 -67485748 - L1MA9 LINE L1 -1 6311 6106 1712 172 34 0 chr9 74785696 74785987 -67485457 - MER2 DNA MER2_type -2 343 43 2022 149 0 7 chr9 74786452 74786753 -67484691 - AluJo SINE Alu -13 299 1 885 271 160 45 chr9 74786808 74787451 -67483993 + L1MC4a LINE L1 5408 6124 -1684 3000 64 0 6 chr9 74787804 74788161 -67483283 - THE1A LTR MaLR 0 355 1 263 243 0 29 chr9 74788469 74788539 -67482905 - AluSp SINE Alu 0 302 235 242 326 11 33 chr9 74788573 74788665 -67482779 + L2 LINE L2 3179 3268 -4 684 300 86 41 chr9 74789290 74790105 -67481339 - L1ME2 LINE L1 -226 5938 5084 3729 192 32 14 chr9 74790599 74791308 -67480136 - MER72 LTR ERV1 0 722 1 1648 124 29 7 chr9 74791629 74791902 -67479542 - L1MA8 LINE L1 -5 6286 6008 310 320 59 20 chr9 74791906 74792059 -67479385 + MER20 DNA MER1_type 57 215 -4 269 276 171 32 chr9 74792061 74792184 -67479260 - MIR3 SINE MIR -51 157 18 1318 191 13 4 chr9 74792949 74793185 -67478259 - MIR SINE MIR -6 256 19 604 292 68 42 chr9 74793955 74794191 -67477253 - MIR SINE MIR -1 261 20 303 28 0 0 chr9 74795559 74795595 -67475849 + (GA)n Simple_repeat Simple_repeat 1 36 0 594 305 141 19 chr9 74795794 74796155 -67475289 - MLT1I LTR MaLR -4 405 1 5728 117 37 16 chr9 74796183 74797039 -67474405 - L1MC1 LINE L1 0 6333 5460 881 232 47 0 chr9 74797165 74797355 -67474089 - MER58A DNA MER1_type -25 199 1 1716 100 4 0 chr9 74797646 74797875 -67473569 - AluSp SINE Alu -83 230 1 266 169 15 0 chr9 74799116 74799181 -67472263 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 281 362 53 0 chr9 74799772 74799866 -67471578 - MIR SINE MIR -67 141 43 568 253 65 39 chr9 74800080 74800309 -67471135 + L1MCc LINE L1 11 245 -6178 269 296 11 0 chr9 74801715 74801803 -67469641 - MIR SINE MIR -27 235 147 1206 211 46 4 chr9 74801880 74802140 -67469304 - MER58B DNA MER1_type 0 341 71 328 214 206 15 chr9 74804176 74804307 -67467137 + MER5B DNA MER1_type 1 156 -22 404 237 177 54 chr9 74804621 74804807 -67466637 + MIR SINE MIR 48 256 -6 292 324 49 10 chr9 74806136 74806238 -67465206 + MIR SINE MIR 27 132 -76 367 239 48 78 chr9 74806459 74806626 -67464818 + MER103 DNA DNA 4 165 -1 453 289 77 49 chr9 74809296 74809771 -67461673 + L1MCc LINE L1 1390 1920 -5099 2260 111 0 0 chr9 74810387 74810685 -67460759 + AluSx SINE Alu 1 298 -14 242 326 170 15 chr9 74810697 74810967 -67460477 - L2 LINE L2 -867 2447 2136 410 273 22 50 chr9 74811188 74811327 -67460117 + L2 LINE L2 3174 3308 -5 321 202 167 0 chr9 74811374 74811458 -67459986 + MER5A DNA MER1_type 9 106 -83 971 160 17 44 chr9 74811669 74811850 -67459594 - MER5B DNA MER1_type 0 178 3 2323 156 39 21 chr9 74812671 74813108 -67458336 + L1M3 LINE L1 5377 5821 -362 190 295 252 14 chr9 74813167 74813306 -67458138 + L2 LINE L2 3142 3313 0 24 0 0 0 chr9 74813318 74813342 -67458102 + AT_rich Low_complexity Low_complexity 1 24 0 796 204 0 0 chr9 74813454 74813586 -67457858 + AluJo SINE Alu 2 133 -169 500 219 19 12 chr9 74813598 74813758 -67457686 + GA-rich Low_complexity Low_complexity 2 162 0 803 177 20 7 chr9 74813758 74813905 -67457539 + AluJo SINE Alu 129 277 -35 489 34 0 0 chr9 74813905 74813964 -67457480 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 1154 204 29 0 chr9 74913965 74914205 -67357239 - L1MB4 LINE L1 -162 6018 5772 1130 129 0 55 chr9 74914220 74914422 -67357022 + L1PA16 LINE L1 5722 5912 -254 * 2288 170 6 44 chr9 74914419 74914896 -67356548 - L1MB4 LINE L1 -422 5761 5303 223 256 0 0 chr9 74915116 74915159 -67356285 - L2 LINE L2 -22 3291 3249 23 0 0 0 chr9 74915232 74915255 -67356189 + AT_rich Low_complexity Low_complexity 1 23 0 265 228 206 11 chr9 74917156 74917248 -67354196 - L2 LINE L2 -3 3310 3201 1554 256 46 16 chr9 74917741 74918179 -67353265 + MLT1D LTR MaLR 3 453 -52 2437 154 9 44 chr9 74918182 74918637 -67352807 + MER65A LTR ERV1 5 443 -2 8425 213 55 56 chr9 74918640 74921131 -67350313 + MER65A-int LTR ERV1 7 2494 -2377 25 0 0 68 chr9 74921243 74921287 -67350157 + AT_rich Low_complexity Low_complexity 1 41 0 9873 195 35 9 chr9 74921681 74923115 -67348329 - L1PA16 LINE L1 -6 6160 4765 234 0 0 0 chr9 74923115 74923141 -67348303 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9873 195 35 9 chr9 74923141 74924724 -67346720 - L1PA16 LINE L1 -1401 4765 3066 343 274 0 0 chr9 74924731 74924804 -67346640 + AluJ/FLAM SINE Alu 12 84 -218 24 67 0 0 chr9 74925176 74925221 -67346223 + AT_rich Low_complexity Low_complexity 1 45 0 246 62 0 0 chr9 74925403 74925435 -67346009 + (TG)n Simple_repeat Simple_repeat 1 32 0 27 0 0 0 chr9 74925480 74925507 -67345937 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr9 74925707 74925729 -67345715 + AT_rich Low_complexity Low_complexity 1 22 0 364 351 51 2 chr9 74926659 74926798 -67344646 + MIR3 SINE MIR 54 198 -10 2734 13 0 0 chr9 74927539 74927844 -67343600 - AluY SINE Alu -6 305 1 483 275 67 7 chr9 74928344 74928493 -67342951 + MIR SINE MIR 104 261 -1 1145 299 65 35 chr9 74928593 74929051 -67342393 - LTR33 LTR ERVL -12 509 38 996 172 4 56 chr9 74929164 74929424 -67342020 + AluJb SINE Alu 1 378 0 306 156 0 16 chr9 74929424 74929488 -67341956 + A-rich Low_complexity Low_complexity 1 180 0 552 190 0 26 chr9 74930567 74930683 -67340761 - Charlie1 DNA MER1_type -19 2742 2630 4766 168 33 15 chr9 74930684 74932443 -67339001 + L1PA16 LINE L1 4280 6069 -97 303 205 205 0 chr9 74932530 74932608 -67338836 + MIR SINE MIR 67 160 -102 5943 104 0 19 chr9 74932618 74933454 -67337990 + L1P3 LINE L1 8 827 -5634 31627 101 9 17 chr9 74933580 74935302 -67336142 + L1P3 LINE L1 768 2503 -3966 2494 71 0 0 chr9 74935302 74935599 -67335845 + AluY SINE Alu 4 300 -11 31627 101 9 17 chr9 74935599 74939029 -67332415 + L1P3 LINE L1 2503 5955 -514 2136 120 3 3 chr9 74939658 74939959 -67331485 - AluSq SINE Alu -12 301 1 735 50 0 0 chr9 74939967 74940067 -67331377 - AluY SINE Alu -2 309 210 294 265 49 20 chr9 74940273 74940375 -67331069 - HAL1b LINE L1 -879 469 365 187 327 71 26 chr9 74940791 74940904 -67330540 - MER5A DNA MER1_type -6 183 66 195 114 0 0 chr9 74941994 74942029 -67329415 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 506 292 68 77 chr9 74942286 74942705 -67328739 - MLT1H1 LTR MaLR 0 595 66 30 0 0 0 chr9 74946462 74946492 -67324952 + AT_rich Low_complexity Low_complexity 1 30 0 206 81 27 0 chr9 74947244 74947281 -67324163 + (GA)n Simple_repeat Simple_repeat 1 38 0 446 220 64 46 chr9 74947289 74947462 -67323982 - ORSL DNA AcHobo -56 219 44 198 231 215 50 chr9 74947739 74947860 -67323584 - MIR SINE MIR 0 262 122 1501 273 87 29 chr9 74948227 74948816 -67322628 + L1ME3A LINE L1 5536 6158 -12 3626 197 82 18 chr9 74950661 74950783 -67320661 + L1MB8 LINE L1 4988 5101 -1077 192 97 0 0 chr9 74950783 74950814 -67320630 + (CA)n Simple_repeat Simple_repeat 2 32 0 3626 197 82 18 chr9 74950814 74951816 -67319628 + L1MB8 LINE L1 5101 6177 -1 622 276 55 0 chr9 74952115 74952314 -67319130 - MER63A DNA MER1_type 0 210 1 1779 210 113 87 chr9 74952449 74953181 -67318263 - LTR1B LTR ERV1 -75 751 1 234 0 0 0 chr9 74954029 74954055 -67317389 + (TG)n Simple_repeat Simple_repeat 1 26 0 2145 120 0 0 chr9 74954058 74954341 -67317103 - AluSx SINE Alu -29 283 1 22 0 0 0 chr9 74954874 74954896 -67316548 + AT_rich Low_complexity Low_complexity 1 22 0 325 246 85 85 chr9 74955605 74955822 -67315622 - MIR SINE MIR -49 213 4 188 328 24 64 chr9 74956498 74956623 -67314821 - MIR SINE MIR -43 219 100 24 32 0 0 chr9 74956931 74956962 -67314482 + AT_rich Low_complexity Low_complexity 1 31 0 978 274 73 67 chr9 74957401 74958127 -67313317 - L2 LINE L2 0 3313 2592 377 292 93 105 chr9 74961570 74961769 -67309675 + LTR16A LTR ERVL 67 262 -188 1419 199 4 11 chr9 74961769 74962045 -67309399 - L1PB4 LINE L1 -2 6154 5881 377 292 93 105 chr9 74962045 74962198 -67309246 + LTR16A LTR ERVL 262 415 -35 2420 85 3 0 chr9 74963870 74964176 -67307268 - AluSg SINE Alu -3 307 1 407 193 26 23 chr9 74964598 74964720 -67306724 + MIR SINE MIR 31 150 -63 21 36 0 0 chr9 74965588 74965616 -67305828 + AT_rich Low_complexity Low_complexity 1 28 0 2318 60 0 17 chr9 74965861 74966159 -67305285 - AluY SINE Alu -18 293 1 2007 155 3 0 chr9 74967079 74967382 -67304062 - AluSx SINE Alu -8 304 1 183 291 200 54 chr9 74967535 74967830 -67303614 - L2 LINE L2 -653 2661 2324 1275 197 102 54 chr9 74967879 74968487 -67302957 + Charlie2 DNA MER1_type 2226 2862 0 324 188 94 31 chr9 74968724 74968820 -67302624 + MIR SINE MIR 38 139 -123 288 320 47 35 chr9 74969410 74969582 -67301862 + LTR67 LTR ERVL 330 503 -54 4647 139 65 51 chr9 74969898 74971306 -67300138 + pTR5 LTR ERV1 743 2295 -143 317 354 73 6 chr9 74972652 74972830 -67298614 - L1MC/D LINE L1 -1985 5823 5634 207 299 11 11 chr9 74972854 74972941 -67298503 - L2 LINE L2 -1414 1900 1814 779 250 61 0 chr9 74973831 74974011 -67297433 + MIR SINE MIR 23 213 -49 638 327 40 9 chr9 74974054 74974280 -67297164 - MIR SINE MIR 0 262 30 446 230 44 9 chr9 74974564 74974677 -67296767 - MER5A DNA MER1_type -27 162 46 21 0 0 0 chr9 74977312 74977333 -67294111 + AT_rich Low_complexity Low_complexity 1 21 0 466 181 68 30 chr9 74977811 74977944 -67293500 - LTR19A LTR ERV1 -4 482 345 450 0 0 0 chr9 74978538 74978588 -67292856 + (CA)n Simple_repeat Simple_repeat 2 51 0 23 33 0 0 chr9 74979138 74979168 -67292276 + AT_rich Low_complexity Low_complexity 1 30 0 936 273 105 60 chr9 74979409 74979508 -67291936 + MLT1L LTR MaLR 4 97 -518 1367 99 56 5 chr9 74979508 74979721 -67291723 + L1PA8 LINE L1 5949 6172 0 936 273 105 60 chr9 74979721 74980204 -67291240 + MLT1L LTR MaLR 97 612 -3 372 229 115 41 chr9 74980762 74981006 -67290438 - L1MC5 LINE L1 -159 7802 7541 2183 76 4 0 chr9 74981110 74981386 -67290058 - AluSp SINE Alu -2 311 35 304 276 130 42 chr9 74981393 74981632 -67289812 - L1MEd LINE L1 -5214 905 646 1883 154 43 6 chr9 74981636 74981960 -67289484 + MER1B DNA MER1_type 1 336 -1 208 211 0 0 chr9 74983129 74983167 -67288277 + GA-rich Low_complexity Low_complexity 3 40 0 578 159 0 0 chr9 74983986 74984074 -67287370 + Tigger3b DNA MER2_type 15 102 -1129 * 5624 136 24 8 chr9 74984072 74985015 -67286429 + Tigger3b DNA MER2_type 274 1231 0 2037 133 0 0 chr9 74985117 74985402 -67286042 - AluSx SINE Alu -14 298 14 189 0 0 0 chr9 74985466 74985487 -67285957 + (TG)n Simple_repeat Simple_repeat 2 22 0 7781 18 0 0 chr9 74986087 74987419 -67284025 - L1PA3 LINE L1 -3 6152 4821 8858 25 0 0 chr9 74987419 74988460 -67282984 + L1PA3 LINE L1 3790 4830 -1316 226 269 58 87 chr9 74988657 74988966 -67282478 + L1MC/D LINE L1 719 1018 -5101 1604 198 9 21 chr9 74989026 74989355 -67282089 - MER2 DNA MER2_type -19 326 2 846 289 80 39 chr9 74989443 74989925 -67281519 + L1MC/D LINE L1 2899 3431 -2698 1270 185 115 0 chr9 74989925 74990185 -67281259 - AluJo SINE Alu -22 290 1 846 289 80 39 chr9 74990185 74990528 -67280916 + L1MC/D LINE L1 3431 3758 -2371 1151 204 47 2 chr9 74990540 74990988 -67280456 + LTR54 LTR ERV1 3 496 -2 1193 271 141 43 chr9 74991026 74992335 -67279109 + L1MC/D LINE L1 3781 5216 -913 304 200 27 13 chr9 74992366 74992441 -67279003 - L1MC4a LINE L1 -1880 5928 5853 513 318 69 47 chr9 74992732 74992965 -67278479 - MIR SINE MIR -21 241 4 1455 208 111 9 chr9 74993087 74993272 -67278172 - MLT1A2 LTR MaLR -8 366 201 680 35 0 0 chr9 74993272 74993357 -67278087 - L1PA4 LINE L1 -8 6147 6063 1455 208 111 9 chr9 74993357 74993503 -67277941 - MLT1A2 LTR MaLR -173 201 1 224 204 41 0 chr9 74993542 74993591 -67277853 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 256 244 26 13 chr9 74993897 74993975 -67277469 + L1MC/D LINE L1 5672 5750 -2041 22 70 0 0 chr9 74994393 74994436 -67277008 + AT_rich Low_complexity Low_complexity 1 43 0 5260 205 27 18 chr9 74995228 74997275 -67274169 + L1MB8 LINE L1 4109 6176 -2 260 378 7 40 chr9 74997462 74997610 -67273834 - MIR SINE MIR -57 205 63 243 191 0 0 chr9 74997656 74997703 -67273741 - L1MA8 LINE L1 -5 6286 6240 6053 103 14 4 chr9 74997710 74998755 -67272689 - L1PA13 LINE L1 -1 6162 5109 1523 153 0 4 chr9 74998756 74999005 -67272439 - L1PA13 LINE L1 -2334 3812 3565 2987 153 50 7 chr9 74999007 74999571 -67271873 - L1MA8 LINE L1 -47 6244 5657 202 231 0 0 chr9 75000173 75000212 -67271232 + T-rich Low_complexity Low_complexity 2 40 0 9065 197 34 16 chr9 75001949 75004433 -67267011 + L1MA9 LINE L1 3289 5829 -483 1950 118 28 0 chr9 75004433 75004721 -67266723 + AluSx SINE Alu 1 296 -16 9065 197 34 16 chr9 75004721 75004865 -67266579 + L1MA9 LINE L1 5829 5969 -343 1832 326 76 32 chr9 75004977 75005943 -67265501 + L2 LINE L2 119 1126 -2188 617 240 118 45 chr9 75005965 75006204 -67265240 - L1MC4 LINE L1 -142 7900 7680 1916 189 117 13 chr9 75006204 75006658 -67264786 - MLT1D LTR MaLR -4 501 1 617 240 118 45 chr9 75006658 75007480 -67263964 - L1MC4 LINE L1 -362 7680 6516 332 154 31 0 chr9 75007471 75007536 -67263908 - L1MB3 LINE L1 -109 6074 6008 * 245 234 0 0 chr9 75007637 75007684 -67263760 + L2 LINE L2 3007 3053 -219 307 325 47 63 chr9 75008146 75008337 -67263107 - MIR SINE MIR -62 200 13 2023 127 0 3 chr9 75008583 75008874 -67262570 + AluSq SINE Alu 1 290 -23 201 74 0 0 chr9 75008875 75008902 -67262542 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 963 195 108 22 chr9 75008928 75009159 -67262285 - L1MD1 LINE L1 0 6242 5992 548 138 43 11 chr9 75009170 75009264 -67262180 - L1MD1 LINE L1 -499 5860 5764 772 184 61 31 chr9 75009268 75009431 -67262013 + MER74A LTR ERVL 1 168 -390 3456 137 101 51 chr9 75009472 75010274 -67261170 - MER21A LTR ERV1 -16 915 1 1738 221 48 0 chr9 75010274 75010625 -67260819 + MER74A LTR ERVL 191 558 0 672 233 0 0 chr9 75010632 75010765 -67260679 - L1MD1 LINE L1 -511 5731 5599 431 234 43 0 chr9 75010783 75010877 -67260567 - MIR SINE MIR -78 184 87 342 0 0 0 chr9 75011000 75011038 -67260406 + (TAA)n Simple_repeat Simple_repeat 3 40 0 201 147 0 0 chr9 75011645 75011679 -67259765 + (TTG)n Simple_repeat Simple_repeat 3 36 0 436 325 90 16 chr9 75011966 75012277 -67259167 - L1ME3A LINE L1 -243 5927 5594 449 289 75 23 chr9 75012296 75012469 -67258975 - LTR33 LTR ERVL -14 507 326 475 301 140 5 chr9 75012551 75012737 -67258707 - LTR33 LTR ERVL -310 211 1 601 302 94 8 chr9 75012745 75013010 -67258434 - L1ME3A LINE L1 -580 5584 5297 1979 120 34 0 chr9 75013056 75013374 -67258070 - AluSx SINE Alu 0 312 1 3346 272 41 44 chr9 75014428 75015958 -67255486 + L1M4 LINE L1 2975 4499 -1647 2737 248 54 36 chr9 75015989 75017545 -67253899 + L1ME2 LINE L1 4375 5981 -183 2534 45 0 10 chr9 75017545 75017858 -67253586 + AluY SINE Alu 1 310 -1 2737 248 54 36 chr9 75017858 75018045 -67253399 + L1ME2 LINE L1 5981 6163 -1 27 73 0 0 chr9 75018207 75018262 -67253182 + AT_rich Low_complexity Low_complexity 1 55 0 2119 95 21 0 chr9 75018776 75019059 -67252385 + AluSq SINE Alu 1 289 -24 304 261 27 0 chr9 75019120 75019231 -67252213 + (TA)n Simple_repeat Simple_repeat 2 115 0 32 26 0 0 chr9 75019231 75019270 -67252174 + AT_rich Low_complexity Low_complexity 1 39 0 212 226 53 30 chr9 75019310 75019443 -67252001 + (CATTA)n Simple_repeat Simple_repeat 3 138 0 * 273 147 77 28 chr9 75019370 75019513 -67251931 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 327 302 77 33 chr9 75019934 75020116 -67251328 - Charlie8 DNA MER1_type -2143 274 85 26 30 0 0 chr9 75021965 75021998 -67249446 + AT_rich Low_complexity Low_complexity 1 33 0 797 320 28 0 chr9 75022942 75023192 -67248252 + MIR SINE MIR 5 261 -1 1008 205 62 33 chr9 75025542 75025718 -67245726 - MER20 DNA MER1_type -2 217 33 1406 208 124 14 chr9 75025718 75026074 -67245370 - MSTD LTR MaLR 0 396 2 1008 205 62 33 chr9 75026074 75026107 -67245337 - MER20 DNA MER1_type -186 33 2 2869 231 50 3 chr9 75026217 75026819 -67244625 + L1MB8 LINE L1 2629 3202 -2944 264 59 0 0 chr9 75026819 75026853 -67244591 + (CA)n Simple_repeat Simple_repeat 1 34 0 186 43 0 0 chr9 75026852 75026875 -67244569 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 2869 231 50 3 chr9 75026853 75027137 -67244307 + L1MB8 LINE L1 3202 3533 -2613 662 200 55 0 chr9 75027278 75027423 -67244021 + L1MB8 LINE L1 3560 3712 -2434 4089 176 47 46 chr9 75027523 75028669 -67242775 + L1MB8 LINE L1 5027 6176 -2 1873 143 11 0 chr9 75028870 75029157 -67242287 - AluSx SINE Alu -20 292 3 221 269 115 48 chr9 75029221 75029325 -67242119 - L2 LINE L2 -19 3294 3184 201 314 0 0 chr9 75029378 75029429 -67242015 - L2 LINE L2 -343 2971 2921 393 322 0 0 chr9 75029530 75029645 -67241799 - L2 LINE L2 -1331 1983 1869 2108 198 26 62 chr9 75029649 75030145 -67241299 + MLT2B1 LTR ERVL 1 478 -42 341 22 22 0 chr9 75030145 75030191 -67241253 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 2108 198 26 62 chr9 75030191 75030230 -67241214 + MLT2B1 LTR ERVL 478 517 -3 2047 198 60 35 chr9 75030307 75030787 -67240657 - MLT1D LTR MaLR -13 492 1 432 243 89 89 chr9 75031825 75032060 -67239384 + LTR16C LTR ERVL 1 235 -256 256 290 159 0 chr9 75032064 75032171 -67239273 + LTR16C LTR ERVL 354 477 -14 916 59 0 0 chr9 75032989 75033107 -67238337 - L1P LINE L1 -1208 4938 4821 1098 38 0 0 chr9 75033107 75033238 -67238206 + L1P LINE L1 3790 3920 -2226 2853 233 42 35 chr9 75033515 75033565 -67237879 + L1ME1 LINE L1 5118 5166 -1000 1722 183 0 3 chr9 75033565 75033866 -67237578 + AluSx SINE Alu 1 300 -12 2853 233 42 35 chr9 75033866 75034849 -67236595 + L1ME1 LINE L1 5166 6161 -5 248 300 10 20 chr9 75035064 75035164 -67236280 + MIR SINE MIR 68 166 -96 307 338 220 31 chr9 75035726 75036904 -67234540 - L2 LINE L2 -927 2387 987 306 294 89 30 chr9 75037122 75037290 -67234154 + LTR50 LTR ERVL 24 197 -324 598 194 36 56 chr9 75038013 75038209 -67233235 - L1MA9 LINE L1 -38 6274 6083 585 246 70 0 chr9 75038217 75038445 -67232999 - L1MEc LINE L1 -3698 2382 2139 481 282 103 24 chr9 75038540 75039094 -67232350 - L1MEc LINE L1 -4766 1487 892 322 294 122 33 chr9 75039148 75039362 -67232082 - L1MEc LINE L1 -5282 788 556 26 64 0 0 chr9 75040292 75040339 -67231105 + AT_rich Low_complexity Low_complexity 1 47 0 255 243 70 58 chr9 75043529 75043772 -67227672 - L1MEd LINE L1 -5031 1088 843 327 407 26 5 chr9 75043845 75044034 -67227410 - L1MEd LINE L1 -5358 761 569 4760 158 8 8 chr9 75044360 75045159 -67226285 + L1PA15 LINE L1 5365 6163 -2 2361 89 0 0 chr9 75045166 75045470 -67225974 + AluY SINE Alu 1 304 -7 21 82 0 0 chr9 75045629 75045678 -67225766 + AT_rich Low_complexity Low_complexity 1 49 0 196 367 39 55 chr9 75045756 75045884 -67225560 + L2 LINE L2 2990 3115 -157 500 206 10 0 chr9 75046366 75046463 -67224981 + AluSp/q SINE Alu 201 298 -15 1713 235 148 34 chr9 75048196 75048847 -67222597 - MER50 LTR ERV1 0 734 10 261 230 151 56 chr9 75049648 75049774 -67221670 + MLT1J LTR MaLR 324 461 -50 873 311 103 26 chr9 75049921 75050387 -67221057 + LTR33 LTR ERVL 15 516 -5 387 308 45 26 chr9 75050719 75050875 -67220569 + MIR3 SINE MIR 49 207 -1 275 314 0 35 chr9 75051515 75051601 -67219843 + L2 LINE L2 3190 3272 0 349 294 92 18 chr9 75052379 75052542 -67218902 - MER5A DNA MER1_type -11 178 4 333 314 85 22 chr9 75052681 75052904 -67218540 + MIR SINE MIR 2 238 -24 2614 176 14 16 chr9 75053204 75053697 -67217747 - MER72 LTR ERV1 0 722 231 1254 208 70 72 chr9 75054720 75055177 -67216267 - MLT1C LTR MaLR -2 465 10 306 154 39 0 chr9 75055340 75055418 -67216026 + (TA)n Simple_repeat Simple_repeat 1 81 0 23 33 0 0 chr9 75058280 75058310 -67213134 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr9 75058931 75058979 -67212465 + AT_rich Low_complexity Low_complexity 1 48 0 2186 116 7 0 chr9 75060795 75061089 -67210355 - AluSc SINE Alu -13 296 1 442 240 39 23 chr9 75062008 75062137 -67209307 - L2 LINE L2 -4 3309 3179 2809 249 119 21 chr9 75062379 75063085 -67208359 - L1M4 LINE L1 -1062 5084 4448 2260 77 3 0 chr9 75063085 75063432 -67208012 - AluSp SINE Alu 0 348 1 2809 249 119 21 chr9 75063432 75063911 -67207533 - L1M4 LINE L1 -1698 4448 3782 2069 297 103 32 chr9 75063924 75065621 -67205823 - L1MEc LINE L1 -4545 1851 34 1894 296 19 0 chr9 75170420 75170961 -67100483 - MLT1H1 LTR MaLR 0 555 5 293 264 0 55 chr9 75170975 75171085 -67100359 - L2 LINE L2 -1 3312 3209 2050 186 23 37 chr9 75171152 75171581 -67099863 + MSTB LTR MaLR 3 425 -1 22 80 0 0 chr9 75175720 75175770 -67095674 + AT_rich Low_complexity Low_complexity 1 50 0 582 216 0 0 chr9 75176109 75176243 -67095201 - L1PA2 LINE L1 -9 6146 6013 4333 173 26 11 chr9 75177539 75178467 -67092977 + L1MB2 LINE L1 5182 6120 -51 226 288 30 15 chr9 75178582 75178648 -67092796 - MIR SINE MIR -102 160 94 1812 279 88 13 chr9 75178685 75179209 -67092235 - MLT1G LTR MaLR -27 563 1 23 33 0 0 chr9 75180059 75180089 -67091355 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr9 75180137 75180173 -67091271 + AT_rich Low_complexity Low_complexity 1 36 0 644 106 11 0 chr9 75180825 75180919 -67090525 + L1MC2 LINE L1 6239 6333 -11 2315 90 0 0 chr9 75181583 75181872 -67089572 + AluSg SINE Alu 1 289 -21 26 0 0 0 chr9 75182398 75182424 -67089020 + AT_rich Low_complexity Low_complexity 1 26 0 580 289 63 78 chr9 75183550 75183951 -67087493 - L1ME LINE L1 -4814 1570 1184 357 235 103 51 chr9 75183989 75184223 -67087221 - L1ME LINE L1 -5118 1254 1009 30276 40 1 0 chr9 75185540 75189536 -67081908 - L1P LINE L1 -1316 4830 705 561 306 125 21 chr9 75190135 75190462 -67080982 - MLT1K LTR MaLR -126 462 102 2463 97 0 0 chr9 75190523 75190833 -67080611 - AluSg SINE Alu 0 310 1 243 235 111 0 chr9 75191183 75191264 -67080180 - MLT1J LTR MaLR -75 436 347 791 64 9 0 chr9 75191416 75191526 -67079918 + (GA)n Simple_repeat Simple_repeat 2 112 0 449 168 42 11 chr9 75191526 75191616 -67079828 + MER90 LTR ERV1 13 105 -509 667 307 93 69 chr9 75191846 75192413 -67079031 + L3 LINE CR1 243 823 -754 212 262 0 0 chr9 75192504 75192546 -67078898 + L3 LINE CR1 1043 1084 -493 290 248 198 0 chr9 75193033 75193134 -67078310 + L3 LINE CR1 1446 1566 -11 619 265 78 0 chr9 75194880 75195046 -67076398 + MLT2D LTR ERVL 129 307 -107 181 192 0 27 chr9 75195086 75195159 -67076285 + (TA)n Simple_repeat Simple_repeat 2 72 0 315 88 0 35 chr9 75195168 75195225 -67076219 + MLT2B1 LTR ERVL 464 518 -2 21 0 0 0 chr9 75196036 75196057 -67075387 + AT_rich Low_complexity Low_complexity 1 21 0 680 255 16 36 chr9 75196686 75196878 -67074566 + MER5A DNA MER1_type 1 188 -1 406 136 0 0 chr9 75197399 75197465 -67073979 + MSTA LTR MaLR 363 428 0 21 0 0 0 chr9 75197637 75197658 -67073786 + AT_rich Low_complexity Low_complexity 1 21 0 1118 141 11 0 chr9 75198282 75198459 -67072985 + MSTD LTR MaLR 218 396 0 2025 133 52 47 chr9 75199033 75199395 -67072049 - THE1B LTR MaLR 0 364 1 11146 107 6 6 chr9 75199399 75200974 -67070470 - THE1B-int LTR MaLR -4 1576 2 183 139 0 0 chr9 75201380 75201416 -67070028 + (TCC)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr9 75201567 75201589 -67069855 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 186 43 0 0 chr9 75202652 75202675 -67068769 + (CGG)n Simple_repeat Simple_repeat 2 24 0 1793 146 164 14 chr9 75203406 75203777 -67067667 + MSTA LTR MaLR 1 427 -1 190 329 14 0 chr9 75204754 75204824 -67066620 - MIR SINE MIR -131 131 61 400 203 0 0 chr9 75205283 75205357 -67066087 + Charlie8 DNA MER1_type 2344 2417 0 185 231 0 0 chr9 75205372 75205411 -67066033 + MIR3 SINE MIR 168 206 -2 26 0 0 0 chr9 75205738 75205764 -67065680 + AT_rich Low_complexity Low_complexity 1 26 0 250 270 16 0 chr9 75206228 75206291 -67065153 + MIR SINE MIR 191 254 -8 961 178 24 19 chr9 75206791 75207004 -67064440 + L1PA16 LINE L1 5939 6152 -14 248 217 72 14 chr9 75207779 75207848 -67063596 - MLT1J2 LTR MaLR -34 416 344 341 228 59 22 chr9 75207925 75208065 -67063379 - MLT1J2 LTR MaLR -286 225 65 1391 213 6 38 chr9 75209100 75209415 -67062029 + AluJb SINE Alu 1 305 -7 23 33 0 0 chr9 75210550 75210580 -67060864 + AT_rich Low_complexity Low_complexity 1 30 0 32 57 0 0 chr9 75211109 75211162 -67060282 + AT_rich Low_complexity Low_complexity 1 53 0 573 338 41 7 chr9 75213492 75213883 -67057561 - MER119 DNA MER1_type 0 583 2 272 314 0 35 chr9 75214980 75215066 -67056378 + L2 LINE L2 3190 3272 0 343 294 92 18 chr9 75215845 75216008 -67055436 - MER5A DNA MER1_type -11 178 4 348 314 85 22 chr9 75216147 75216370 -67055074 + MIR SINE MIR 2 238 -24 4286 165 8 3 chr9 75216671 75217387 -67054057 - MER72 LTR ERV1 0 722 3 23 33 0 0 chr9 75219098 75219128 -67052316 + AT_rich Low_complexity Low_complexity 1 30 0 738 327 88 33 chr9 75220412 75220948 -67050496 - L2 LINE L2 -2 3311 2736 22 0 0 0 chr9 75221171 75221193 -67050251 + AT_rich Low_complexity Low_complexity 1 22 0 370 211 18 37 chr9 75222226 75222335 -67049109 + MER57-int LTR ERV1 5647 5753 -1784 332 147 44 0 chr9 75222463 75222531 -67048913 + L1MA8 LINE L1 6100 6170 -121 1976 147 0 31 chr9 75222531 75222884 -67048560 - Tigger7 DNA MER2_type 0 2487 2146 848 206 220 5 chr9 75222886 75223109 -67048335 + Tigger7 DNA MER2_type 77 347 -2140 364 267 0 0 chr9 75223110 75223185 -67048259 - Tigger7 DNA MER2_type -657 76 2 495 188 43 0 chr9 75223186 75223303 -67048141 + L1MA8 LINE L1 6169 6290 -1 872 284 48 75 chr9 75223367 75224117 -67047327 + MER57-int LTR ERV1 2277 6209 -1328 749 214 99 58 chr9 75224486 75224780 -67046664 + MER57-int LTR ERV1 6867 7172 -365 481 250 160 31 chr9 75224780 75225136 -67046308 + MER57A LTR ERV1 20 403 0 1507 38 42 9 chr9 75225182 75225394 -67046050 - L1P2 LINE L1 -338 5817 5599 1109 75 7 0 chr9 75225394 75225540 -67045904 + L1PA5 LINE L1 6002 6149 -5 369 248 25 0 chr9 75225549 75225670 -67045774 + L1ME3A LINE L1 5724 5847 -323 2502 129 3 13 chr9 75227352 75227731 -67043713 + THE1C LTR MaLR 1 375 0 205 205 13 26 chr9 75228249 75228327 -67043117 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 303 93 0 0 chr9 75229338 75229381 -67042063 + (TG)n Simple_repeat Simple_repeat 2 44 0 197 117 11 64 chr9 75229381 75229475 -67041969 + (TA)n Simple_repeat Simple_repeat 1 89 0 413 305 49 12 chr9 75231879 75232043 -67039401 - MIR SINE MIR -33 229 60 268 276 190 17 chr9 75234145 75234261 -67037183 - MIR SINE MIR -69 193 58 222 265 15 15 chr9 75234836 75234904 -67036540 + (CA)n Simple_repeat Simple_repeat 2 69 0 21 82 0 0 chr9 75235786 75235835 -67035609 + AT_rich Low_complexity Low_complexity 1 49 0 2360 86 0 0 chr9 75235994 75236298 -67035146 - AluY SINE Alu -7 304 1 4839 153 8 9 chr9 75236305 75237105 -67034339 - L1PA15 LINE L1 -2 6163 5365 271 317 89 48 chr9 75237431 75238072 -67033372 + L1MEd LINE L1 569 1235 -4884 22 35 0 0 chr9 75239332 75239361 -67032083 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr9 75239480 75239517 -67031927 + AT_rich Low_complexity Low_complexity 1 37 0 904 284 5 1 chr9 75239560 75239797 -67031647 - MIR SINE MIR -1 261 20 206 325 67 17 chr9 75240270 75240390 -67031054 + MIR3 SINE MIR 79 204 -4 282 338 29 14 chr9 75242141 75242280 -67029164 + MIR SINE MIR 66 206 -56 22 35 0 0 chr9 75242293 75242322 -67029122 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr9 75244806 75244833 -67026611 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr9 75245735 75245755 -67025689 + (T)n Simple_repeat Simple_repeat 1 20 0 224 271 34 0 chr9 75247548 75247607 -67023837 + MER5B DNA MER1_type 118 178 0 264 247 171 116 chr9 75247856 75248002 -67023442 + MER5A DNA MER1_type 35 188 -1 644 272 14 28 chr9 75249028 75249241 -67022203 - L2 LINE L2 -2 3311 3102 225 200 0 0 chr9 75249349 75249389 -67022055 - MIR3 SINE MIR -45 163 124 338 289 211 22 chr9 75250426 75250606 -67020838 - MIR SINE MIR -5 257 44 343 184 53 0 chr9 75251126 75251202 -67020242 + MIR SINE MIR 109 188 -74 32 57 0 0 chr9 75251206 75251259 -67020185 + AT_rich Low_complexity Low_complexity 1 53 0 298 224 0 0 chr9 75251292 75251350 -67020094 + MIR SINE MIR 204 261 -1 689 73 0 10 chr9 75251462 75251558 -67019886 + L1PB1 LINE L1 6053 6147 -4 1595 60 0 0 chr9 75252376 75252577 -67018867 - L1PA5 LINE L1 -12 6142 5942 269 206 39 0 chr9 75254287 75254389 -67017055 + (TA)n Simple_repeat Simple_repeat 2 107 0 242 315 0 0 chr9 75254415 75254504 -67016940 + L1MC4 LINE L1 6615 6703 -1339 * 255 266 0 21 chr9 75254434 75254528 -67016916 - L1MC4 LINE L1 -1339 6703 6612 763 249 78 20 chr9 75254544 75254789 -67016655 + MER102b DNA MER1_type 83 341 0 275 49 24 0 chr9 75256789 75256830 -67014614 + (TG)n Simple_repeat Simple_repeat 2 43 0 212 230 0 27 chr9 75257929 75258003 -67013441 + GA-rich Low_complexity Low_complexity 2 73 0 186 43 0 0 chr9 75258485 75258508 -67012936 + (GA)n Simple_repeat Simple_repeat 2 24 0 413 293 17 16 chr9 75258609 75258776 -67012668 - MIR SINE MIR -56 206 45 3331 148 47 2 chr9 75259373 75259949 -67011495 + MER7C DNA MER2_type 1 602 0 336 318 33 40 chr9 75260431 75260582 -67010862 + MIR SINE MIR 15 164 -98 609 294 13 29 chr9 75261133 75261371 -67010073 - L2 LINE L2 0 3313 3080 509 319 12 0 chr9 75262061 75262221 -67009223 + MIR SINE MIR 67 228 -34 1014 256 55 62 chr9 75262276 75262714 -67008730 - L1MC4 LINE L1 -1857 5951 5517 2295 107 3 0 chr9 75262744 75263052 -67008392 + AluSx SINE Alu 1 309 -3 25 65 0 0 chr9 75263134 75263180 -67008264 + AT_rich Low_complexity Low_complexity 1 46 0 1135 263 100 50 chr9 75263664 75264382 -67007062 + L1MEd LINE L1 462 1215 -4904 542 347 17 6 chr9 75264583 75264806 -67006638 + MIR SINE MIR 33 257 -5 238 177 16 65 chr9 75265199 75265261 -67006183 - L2 LINE L2 -5 3308 3250 232 250 94 62 chr9 75266467 75266595 -67004849 - 7SK RNA RNA -61 132 1 227 392 23 8 chr9 75266605 75266735 -67004709 + MIR SINE MIR 23 154 -108 297 298 92 50 chr9 75268081 75268319 -67003125 - L2 LINE L2 -1150 2164 1917 253 324 143 0 chr9 75268482 75268587 -67002857 - MER5A DNA MER1_type -69 120 1 1633 104 0 5 chr9 75268629 75268850 -67002594 + AluSg/x SINE Alu 72 291 -19 1385 282 81 36 chr9 75269256 75269951 -67001493 - L2 LINE L2 -231 3082 2356 287 303 105 30 chr9 75270535 75270908 -67000536 - L1ME4a LINE L1 -206 5915 5515 315 93 0 0 chr9 75270910 75270953 -67000491 + Alu SINE Alu 2 44 -259 46 0 0 0 chr9 75272770 75272816 -66998628 + AT_rich Low_complexity Low_complexity 1 46 0 2361 197 28 30 chr9 75273682 75274225 -66997219 - L1MD3 LINE L1 -11 7984 7443 1913 243 33 30 chr9 75274869 75275286 -66996158 - L1MC4 LINE L1 0 8042 7621 2241 110 7 0 chr9 75275286 75275585 -66995859 - AluSg SINE Alu -9 301 1 1913 243 33 30 chr9 75275585 75275743 -66995701 - L1MC4 LINE L1 -421 7621 7465 352 200 152 9 chr9 75275752 75275857 -66995587 - LTR33 LTR ERVL -52 469 350 353 326 28 14 chr9 75275971 75276112 -66995332 - LTR33 LTR ERVL -373 148 6 2067 140 3 0 chr9 75278616 75278924 -66992520 + AluSx SINE Alu 1 309 -3 2026 120 7 3 chr9 75279134 75279426 -66992018 - AluSx SINE Alu -17 295 3 2412 84 0 0 chr9 75280521 75280829 -66990615 + AluSg SINE Alu 1 308 -2 22 88 0 0 chr9 75281767 75281824 -66989620 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr9 75282987 75283011 -66988433 + AT_rich Low_complexity Low_complexity 1 24 0 42 0 0 0 chr9 75283057 75283099 -66988345 + AT_rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chr9 75285566 75285587 -66985857 + (A)n Simple_repeat Simple_repeat 1 21 0 206 259 120 56 chr9 75287246 75287354 -66984090 - MIR3 SINE MIR -34 228 114 204 171 0 24 chr9 75287947 75287988 -66983456 + MIR SINE MIR 173 212 -50 424 320 197 5 chr9 75288890 75289093 -66982351 - MIR SINE MIR 0 262 21 351 313 88 0 chr9 75289778 75289925 -66981519 + MIR SINE MIR 62 221 -41 451 230 24 35 chr9 75290118 75290262 -66981182 - MIR SINE MIR -55 153 1 393 141 0 24 chr9 75290573 75290658 -66980786 + L1PA15 LINE L1 6082 6164 -1 1552 166 86 6 chr9 75291968 75292282 -66979162 + MER44D DNA MER2_type 1 609 0 213 108 0 0 chr9 75292762 75292799 -66978645 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 252 200 0 0 chr9 75292798 75292853 -66978591 + (CA)n Simple_repeat Simple_repeat 1 55 0 2241 108 3 3 chr9 75293147 75293452 -66977992 + AluSq SINE Alu 1 305 -8 22 35 0 0 chr9 75293938 75293967 -66977477 + AT_rich Low_complexity Low_complexity 1 29 0 249 241 37 0 chr9 75294740 75294794 -66976650 + polypurine Low_complexity Low_complexity 2 57 0 1026 168 10 30 chr9 75296720 75296917 -66974527 - MER3 DNA MER1_type -16 193 1 596 201 37 30 chr9 75297011 75297145 -66974299 - MER5A DNA MER1_type -54 135 1 487 229 137 6 chr9 75297332 75297507 -66973937 + Charlie5 DNA MER1_type 3 200 -2412 952 152 47 39 chr9 75297549 75297639 -66973805 + Charlie5 DNA MER1_type 2328 2416 -169 2405 71 3 0 chr9 75297639 75297934 -66973510 + AluSp SINE Alu 1 296 -17 952 152 47 39 chr9 75297934 75298099 -66973345 + Charlie5 DNA MER1_type 2416 2585 0 269 163 20 0 chr9 75298181 75298230 -66973214 + L3 LINE CR1 1524 1573 -4 27 0 0 0 chr9 75298440 75298467 -66972977 + AT_rich Low_complexity Low_complexity 1 27 0 475 178 164 67 chr9 75298467 75298692 -66972752 - L1MA7 LINE L1 -11 6280 6034 1894 177 60 17 chr9 75298700 75299113 -66972331 - MSTB2 LTR MaLR -12 445 15 264 232 0 0 chr9 75299118 75299174 -66972270 - L1MA7 LINE L1 -256 6035 5980 254 226 71 24 chr9 75299651 75299735 -66971709 - MIR SINE MIR -138 124 37 267 240 230 34 chr9 75301067 75301271 -66970173 + L1ME LINE L1 5585 5828 -293 43 71 0 0 chr9 75301282 75301367 -66970077 + AT_rich Low_complexity Low_complexity 1 85 0 249 336 100 0 chr9 75303341 75303451 -66967993 - MIR SINE MIR -118 144 24 483 256 5 94 chr9 75305782 75305985 -66965459 - MER5A DNA MER1_type -2 187 3 519 245 18 37 chr9 75306002 75306165 -66965279 + MIR SINE MIR 103 262 0 269 246 0 9 chr9 75307527 75307641 -66963803 + (TA)n Simple_repeat Simple_repeat 1 113 0 229 330 110 17 chr9 75307687 75307860 -66963584 + L3 LINE CR1 259 447 -1130 2502 27 10 0 chr9 75308246 75308542 -66962902 + AluY SINE Alu 1 299 -12 549 297 80 9 chr9 75309073 75309274 -66962170 - MIR SINE MIR -10 252 40 638 303 35 43 chr9 75309528 75309759 -66961685 - MIR SINE MIR -2 260 32 867 187 111 5 chr9 75309760 75309958 -66961486 + MER20 DNA MER1_type 1 219 0 463 281 6 48 chr9 75310132 75310299 -66961145 - MER5B DNA MER1_type -15 163 4 252 244 12 47 chr9 75310407 75310493 -66960951 - MIR SINE MIR -15 247 165 405 156 0 13 chr9 75310520 75310597 -66960847 - MLT1A1 LTR MaLR -289 76 1 350 223 73 17 chr9 75310597 75310703 -66960741 - MIR SINE MIR -65 143 38 926 206 5 26 chr9 75310723 75310912 -66960532 - MER5A DNA MER1_type 0 189 5 2099 112 7 7 chr9 75311602 75311911 -66959533 - AluSq SINE Alu 0 309 1 293 313 147 0 chr9 75313114 75313264 -66958180 - MIR SINE MIR -1 261 90 237 259 152 9 chr9 75313334 75313446 -66957998 - MER5A DNA MER1_type -24 165 38 498 238 65 36 chr9 75313459 75313627 -66957817 + MER5B DNA MER1_type 5 177 -1 2098 131 25 0 chr9 75313791 75314149 -66957295 - L1PA16 LINE L1 -263 5903 5537 520 203 45 74 chr9 75314369 75314571 -66956873 + L1MA9 LINE L1 6094 6289 -2 234 62 0 0 chr9 75316790 75316822 -66954622 + (CA)n Simple_repeat Simple_repeat 1 32 0 243 125 0 0 chr9 75318080 75318120 -66953324 + (CA)n Simple_repeat Simple_repeat 1 40 0 210 71 0 0 chr9 75318701 75318729 -66952715 + (TG)n Simple_repeat Simple_repeat 2 29 0 337 123 55 27 chr9 75318900 75318973 -66952471 + MER116 DNA Mariner 4 78 -2 2244 81 10 7 chr9 75319415 75319710 -66951734 - AluSx SINE Alu -16 296 1 407 282 188 7 chr9 75320036 75320185 -66951259 - MER5B DNA MER1_type -1 177 2 1113 199 95 0 chr9 75320480 75320776 -66950668 + MER33 DNA MER1_type 1 324 0 455 220 0 10 chr9 75320833 75320933 -66950511 - Tigger7 DNA MER2_type -2 2485 2387 * 1802 176 107 8 chr9 75320925 75321317 -66950127 - Tigger7 DNA MER2_type -2055 432 2 819 329 59 18 chr9 75321540 75321978 -66949466 + L3 LINE CR1 1049 1504 -73 872 265 23 39 chr9 75322000 75322260 -66949184 + MIR SINE MIR 5 260 -2 346 300 27 18 chr9 75322358 75322468 -66948976 - L2 LINE L2 0 3313 3203 180 0 0 0 chr9 75322497 75322517 -66948927 + (TAA)n Simple_repeat Simple_repeat 2 21 0 347 296 159 17 chr9 75322611 75322891 -66948553 - L2 LINE L2 -340 2974 2593 273 380 18 9 chr9 75323063 75323176 -66948268 - MIR SINE MIR -63 145 32 185 304 0 0 chr9 75323581 75323623 -66947821 - MIR3 SINE MIR -14 194 153 690 207 44 113 chr9 75323623 75323826 -66947618 + MER5A DNA MER1_type 1 189 0 521 303 23 8 chr9 75323826 75323958 -66947486 - MIR3 SINE MIR -48 160 27 191 361 120 8 chr9 75326491 75326624 -66944820 - MIR3 SINE MIR -24 184 37 236 278 62 41 chr9 75326787 75326884 -66944560 + MLT1L LTR MaLR 102 200 -415 325 241 176 30 chr9 75327029 75327228 -66944216 + MLT1K LTR MaLR 335 562 -26 193 288 0 41 chr9 75328721 75328794 -66942650 + MIR SINE MIR 88 157 -105 640 266 112 62 chr9 75330431 75330754 -66940690 + MER102b DNA MER1_type 1 339 -2 795 226 97 40 chr9 75332209 75332457 -66938987 + MIR SINE MIR 1 262 0 2411 46 0 0 chr9 75333726 75334035 -66937409 - AluY SINE Alu 0 309 1 1941 170 0 0 chr9 75334157 75334463 -66936981 + AluJb SINE Alu 1 306 -6 342 0 0 0 chr9 75334542 75334580 -66936864 + (TG)n Simple_repeat Simple_repeat 2 39 0 508 234 209 96 chr9 75335385 75335873 -66935571 - MLT1H LTR MaLR -4 545 3 297 250 130 20 chr9 75336154 75336254 -66935190 + MIR3 SINE MIR 95 205 -3 318 232 289 26 chr9 75337367 75337557 -66933887 + MIR SINE MIR 17 256 -6 815 258 106 10 chr9 75337860 75338058 -66933386 + MIR SINE MIR 12 228 -34 226 231 92 0 chr9 75338058 75338123 -66933321 + LTR3b LTR ERVK 422 492 -8 301 293 12 0 chr9 75338182 75338264 -66933180 + L2 LINE L2 3188 3270 -2 396 326 192 0 chr9 75338353 75338546 -66932898 + MIR SINE MIR 12 241 -21 1870 133 3 18 chr9 75338711 75339036 -66932408 - AluY SINE Alu 0 321 1 206 238 0 0 chr9 75339837 75339879 -66931565 + (TG)n Simple_repeat Simple_repeat 2 43 0 285 51 0 0 chr9 75339879 75339918 -66931526 + (GA)n Simple_repeat Simple_repeat 1 39 0 304 224 0 0 chr9 75340198 75340256 -66931188 + MER5A DNA MER1_type 52 109 -80 435 240 84 0 chr9 75340707 75340886 -66930558 + Charlie2 DNA MER1_type 2552 2745 -117 765 222 11 42 chr9 75341304 75341493 -66929951 - MER58A DNA MER1_type -6 218 36 305 283 179 0 chr9 75341507 75341613 -66929831 + L2 LINE L2 3148 3272 0 44 0 0 0 chr9 75341665 75341709 -66929735 + AT_rich Low_complexity Low_complexity 1 44 0 945 216 35 30 chr9 75342168 75342400 -66929044 - MIR SINE MIR -6 256 24 338 342 152 6 chr9 75343068 75343226 -66928218 + MIR SINE MIR 15 195 -67 809 216 39 14 chr9 75343911 75344119 -66927325 + MER20 DNA MER1_type 3 215 -4 21 57 0 0 chr9 75344701 75344736 -66926708 + AT_rich Low_complexity Low_complexity 1 35 0 24 91 0 0 chr9 75344963 75345029 -66926415 + AT_rich Low_complexity Low_complexity 1 66 0 1325 95 80 30 chr9 75345185 75345427 -66926017 + AluSg/x SINE Alu 74 325 0 183 238 0 0 chr9 75345743 75345785 -66925659 + MIR SINE MIR 213 254 -8 2116 127 0 3 chr9 75346875 75347183 -66924261 - AluSx SINE Alu -1 311 5 257 329 85 49 chr9 75347256 75347420 -66924024 - L2 LINE L2 -176 3096 2927 1947 114 39 0 chr9 75347545 75347665 -66923779 + AluSc SINE Alu 1 115 -194 248 0 0 30 chr9 75347665 75347698 -66923746 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1947 114 39 0 chr9 75347698 75347857 -66923587 + AluSc SINE Alu 115 291 -18 2132 140 0 0 chr9 75348149 75348456 -66922988 - AluSx SINE Alu -5 307 1 22 35 0 0 chr9 75350288 75350317 -66921127 + AT_rich Low_complexity Low_complexity 1 29 0 351 0 0 0 chr9 75350537 75350576 -66920868 + (TC)n Simple_repeat Simple_repeat 1 39 0 28 0 0 0 chr9 75352316 75352344 -66919100 + AT_rich Low_complexity Low_complexity 1 28 0 1759 129 65 4 chr9 75352490 75352768 -66918676 - AluSx SINE Alu -17 295 1 184 190 60 155 chr9 75353207 75353323 -66918121 + MIR3 SINE MIR 85 189 -19 2290 114 0 0 chr9 75353351 75353657 -66917787 - AluSx SINE Alu -6 306 1 23 33 0 0 chr9 75354312 75354342 -66917102 + AT_rich Low_complexity Low_complexity 1 30 0 1848 131 53 3 chr9 75355660 75355942 -66915502 + AluSx SINE Alu 2 297 -15 323 339 66 8 chr9 75356495 75356616 -66914828 - MIR3 SINE MIR -37 171 44 254 288 63 37 chr9 75358214 75358367 -66913077 + MIR SINE MIR 53 151 -57 233 332 228 14 chr9 75359049 75359260 -66912184 + MIR SINE MIR 3 258 -4 615 277 151 0 chr9 75359326 75359532 -66911912 - MIR SINE MIR -22 240 4 329 262 48 29 chr9 75359916 75360019 -66911425 - MIR3 SINE MIR -22 186 82 556 325 12 4 chr9 75360329 75360527 -66910917 + MIR SINE MIR 2 196 -66 697 293 80 4 chr9 75360878 75361103 -66910341 - MIR SINE MIR 0 262 21 223 305 24 0 chr9 75361562 75361644 -66909800 - MIR3 SINE MIR -5 203 120 192 163 0 0 chr9 75362397 75362440 -66909004 + (CTG)n Simple_repeat Simple_repeat 3 45 0 1882 140 0 47 chr9 75362969 75363290 -66908154 - AluJo SINE Alu -6 306 1 489 322 132 4 chr9 75364037 75364279 -66907165 + MLT1J LTR MaLR 22 294 -217 1859 111 9 73 chr9 75364326 75364450 -66906994 + AluSg SINE Alu 1 131 -179 225 0 0 0 chr9 75364450 75364475 -66906969 + (CA)n Simple_repeat Simple_repeat 2 26 0 1859 111 9 73 chr9 75364475 75364666 -66906778 + AluSg SINE Alu 131 296 -14 346 302 172 49 chr9 75365463 75365811 -66905633 + MLT1H LTR MaLR 5 395 -154 810 225 52 0 chr9 75367145 75367336 -66904108 + MER3 DNA MER1_type 9 209 0 213 94 0 0 chr9 75367554 75367586 -66903858 + (CA)n Simple_repeat Simple_repeat 1 32 0 202 234 208 0 chr9 75369435 75369512 -66901932 - L2 LINE L2 -5 3267 3175 531 206 10 0 chr9 75369960 75370057 -66901387 - MER81 DNA DNA -15 99 2 243 88 0 0 chr9 75370664 75370698 -66900746 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 854 176 47 35 chr9 75371004 75371174 -66900270 - FAM SINE Alu -2 173 2 191 277 108 0 chr9 75371680 75371763 -66899681 + L3 LINE CR1 1482 1573 -4 707 236 108 0 chr9 75371788 75372000 -66899444 + MER96B DNA MER1_type? 1 235 -182 207 305 10 115 chr9 75374040 75374240 -66897204 + MIR3 SINE MIR 24 202 -6 249 33 0 0 chr9 75374241 75374271 -66897173 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 2261 96 0 0 chr9 75377921 75378213 -66893231 - AluSc SINE Alu -15 294 3 21 36 0 0 chr9 75378688 75378716 -66892728 + AT_rich Low_complexity Low_complexity 1 28 0 1652 194 11 0 chr9 75379480 75379763 -66891681 - AluJo SINE Alu -24 288 3 390 271 7 12 chr9 75381336 75381467 -66889977 + MER5A DNA MER1_type 9 126 -52 383 242 150 13 chr9 75382171 75382272 -66889172 + MER5A DNA MER1_type 9 95 -94 2442 82 0 3 chr9 75382272 75382577 -66888867 + AluSc SINE Alu 1 304 -5 383 242 150 13 chr9 75382577 75382628 -66888816 + MER5A DNA MER1_type 95 182 -7 4508 189 114 5 chr9 75383086 75384140 -66887304 + L1MC2 LINE L1 5184 6344 0 8726 45 0 5 chr9 75384242 75385361 -66886083 + L1P LINE L1 2843 3956 -2190 2208 94 0 0 chr9 75385366 75385643 -66885801 + AluSg SINE Alu 19 295 -15 345 123 55 27 chr9 75386085 75386158 -66885286 - MER116 DNA Mariner -2 78 4 210 71 0 0 chr9 75386329 75386357 -66885087 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 125 0 0 chr9 75386938 75386978 -66884466 + (TG)n Simple_repeat Simple_repeat 1 40 0 234 62 0 0 chr9 75388237 75388269 -66883175 + (TG)n Simple_repeat Simple_repeat 1 32 0 520 203 45 74 chr9 75390488 75390690 -66880754 - L1MA9 LINE L1 -2 6289 6094 2098 131 25 0 chr9 75390910 75391268 -66880176 + L1PA16 LINE L1 5537 5903 -263 498 238 65 36 chr9 75391432 75391600 -66879844 - MER5B DNA MER1_type -1 177 5 237 259 152 9 chr9 75391613 75391725 -66879719 + MER5A DNA MER1_type 38 165 -24 265 281 182 0 chr9 75391795 75391916 -66879528 + MIR SINE MIR 90 232 -30 379 341 38 8 chr9 75393144 75393276 -66878168 - MIR SINE MIR -81 181 46 1557 249 98 64 chr9 75393371 75393920 -66877524 - MLT1G1 LTR MaLR -27 568 1 325 219 123 0 chr9 75393920 75393993 -66877451 + MIR3 SINE MIR 78 159 -49 215 359 26 32 chr9 75394018 75394174 -66877270 + MER5A DNA MER1_type 35 189 0 321 344 32 13 chr9 75394231 75394385 -66877059 + MIR SINE MIR 94 250 -12 425 218 0 0 chr9 75394752 75394830 -66876614 - L2 LINE L2 -4 3309 3232 480 103 26 0 chr9 75395038 75395116 -66876328 + MADE1 DNA Mariner 1 80 0 210 156 0 0 chr9 75395150 75395195 -66876249 + (TG)n Simple_repeat Simple_repeat 2 46 0 230 0 33 0 chr9 75395262 75395292 -66876152 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 1838 155 6 46 chr9 75395673 75395820 -66875624 + AluJb SINE Alu 1 152 -160 2136 131 0 0 chr9 75395820 75396125 -66875319 + AluSx SINE Alu 3 307 -5 1838 155 6 46 chr9 75396125 75396300 -66875144 + AluJb SINE Alu 152 310 -2 2500 147 7 27 chr9 75398233 75398676 -66872768 - Tigger2a DNA MER2_type 0 434 1 555 274 45 0 chr9 75398767 75398911 -66872533 + MIR3 SINE MIR 34 190 -18 2307 110 0 0 chr9 75399010 75399310 -66872134 + AluSq SINE Alu 1 300 -13 212 75 57 19 chr9 75399329 75399382 -66872062 + (TAA)n Simple_repeat Simple_repeat 3 57 0 391 269 6 6 chr9 75400884 75401059 -66870385 + GA-rich Low_complexity Low_complexity 2 176 0 741 349 90 3 chr9 75401908 75402298 -66869146 + L3 LINE CR1 1137 1560 -17 218 329 0 0 chr9 75403246 75403316 -66868128 + MIR SINE MIR 123 192 -70 190 306 93 74 chr9 75403760 75403868 -66867576 + MIR SINE MIR 44 153 -55 405 265 86 19 chr9 75404657 75404819 -66866625 + MIR SINE MIR 69 241 -21 218 116 23 0 chr9 75405124 75405167 -66866277 + (TA)n Simple_repeat Simple_repeat 2 45 0 343 209 0 0 chr9 75405206 75405273 -66866171 + MIR3 SINE MIR 111 177 -31 832 183 18 14 chr9 75407178 75407397 -66864047 + Charlie5 DNA MER1_type 2366 2585 -27 519 241 199 5 chr9 75407876 75408067 -66863377 - MIR SINE MIR -17 245 18 2093 133 13 0 chr9 75408567 75408875 -66862569 + AluSx SINE Alu 1 312 0 426 211 21 0 chr9 75409097 75409192 -66862252 - L1ME3A LINE L1 -6 6164 6068 1923 121 0 25 chr9 75409649 75409931 -66861513 + AluSc SINE Alu 21 295 -14 21 36 0 0 chr9 75409987 75410015 -66861429 + AT_rich Low_complexity Low_complexity 1 28 0 700 228 15 148 chr9 75411938 75412081 -66859363 - MIR SINE MIR -28 234 140 1493 28 0 0 chr9 75412081 75412258 -66859186 + L1PA4 LINE L1 5977 6153 -2 700 228 15 148 chr9 75412258 75412377 -66859067 - MIR SINE MIR -122 140 7 728 202 0 0 chr9 75412580 75412704 -66858740 - FLAM_A SINE Alu -9 124 1 479 271 19 32 chr9 75412760 75412915 -66858529 + MER5A DNA MER1_type 1 153 -36 394 305 205 33 chr9 75413204 75413732 -66857712 + L2 LINE L2 2671 3290 -23 511 303 108 5 chr9 75414800 75414995 -66856449 - MIR SINE MIR -41 221 7 204 97 0 0 chr9 75417111 75417142 -66854302 + (CA)n Simple_repeat Simple_repeat 2 32 0 2094 104 3 20 chr9 75418919 75419217 -66852227 - AluSx SINE Alu -19 293 1 246 231 106 19 chr9 75420130 75420234 -66851210 - MER102b DNA MER1_type 0 341 229 22 70 0 0 chr9 75421339 75421382 -66850062 + AT_rich Low_complexity Low_complexity 1 43 0 313 265 28 44 chr9 75425228 75425437 -66846007 - MLT1J2 LTR MaLR -207 243 16 333 321 80 9 chr9 75425509 75425621 -66845823 - L2 LINE L2 -3 3269 3150 28 0 0 0 chr9 75425647 75425675 -66845769 + AT_rich Low_complexity Low_complexity 1 28 0 226 342 14 68 chr9 75425768 75425953 -66845491 - L3 LINE CR1 -139 1438 1271 1405 51 0 0 chr9 75425953 75426129 -66845315 + L1PA6 LINE L1 5974 6149 -5 226 342 14 68 chr9 75426129 75426221 -66845223 - L3 LINE CR1 -306 1271 1176 2500 201 17 6 chr9 75426376 75426898 -66844546 - MER74A LTR ERVL 0 558 31 332 407 71 0 chr9 75428722 75428862 -66842582 - L2 LINE L2 -1 3271 3122 1479 123 20 0 chr9 75428930 75429134 -66842310 + AluSg/x SINE Alu 84 291 -21 815 55 9 0 chr9 75429143 75429252 -66842192 + (GAA)n Simple_repeat Simple_repeat 3 112 0 483 289 13 7 chr9 75429457 75429609 -66841835 + Charlie8 DNA MER1_type 109 261 -2156 24 0 0 0 chr9 75430430 75430454 -66840990 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 75432368 75432403 -66839041 + AT_rich Low_complexity Low_complexity 1 35 0 1611 244 58 5 chr9 75432418 75432845 -66838599 + L1M1 LINE L1 16 465 -7100 3219 158 21 74 chr9 75432848 75433951 -66837493 + L1PB1 LINE L1 3696 4856 -1295 803 127 135 0 chr9 75433951 75434077 -66837367 - AluSg/x SINE Alu -28 282 140 3219 158 21 74 chr9 75434077 75434091 -66837353 + L1PB1 LINE L1 4856 4869 -1282 3219 106 15 0 chr9 75434091 75434201 -66837243 + L1PB1 LINE L1 5672 5779 -372 413 36 0 18 chr9 75434201 75434257 -66837187 + (TA)n Simple_repeat Simple_repeat 1 55 0 3219 106 15 0 chr9 75434257 75434619 -66836825 + L1PB1 LINE L1 5779 6151 0 3219 158 21 74 chr9 75434619 75435437 -66836007 + L1PB1 LINE L1 4869 6022 -129 1949 130 7 13 chr9 75435437 75435736 -66835708 + AluSx SINE Alu 1 297 -15 3219 158 21 74 chr9 75435736 75435860 -66835584 + L1PB1 LINE L1 6022 6151 0 3296 141 34 34 chr9 75435860 75435882 -66835562 + L1MA4 LINE L1 5647 5668 -632 2075 141 0 16 chr9 75435882 75436195 -66835249 + AluSx SINE Alu 1 308 -4 3296 141 34 34 chr9 75436195 75436811 -66834633 + L1MA4 LINE L1 5667 6299 -1 1825 159 0 52 chr9 75437052 75437361 -66834083 - AluJb SINE Alu -16 296 4 27 29 0 0 chr9 75437499 75437533 -66833911 + AT_rich Low_complexity Low_complexity 1 34 0 401 241 116 68 chr9 75437629 75437940 -66833504 + L1M4 LINE L1 2676 3001 -3145 307 242 153 16 chr9 75438001 75438125 -66833319 + L1M4 LINE L1 3086 3226 -2920 25 0 0 0 chr9 75438270 75438295 -66833149 + AT_rich Low_complexity Low_complexity 1 25 0 310 323 181 19 chr9 75438597 75438863 -66832581 + HAL1 LINE L1 1081 1389 -1118 239 170 38 0 chr9 75438912 75438965 -66832479 + L2 LINE L2 2493 2547 -767 966 115 8 0 chr9 75438966 75439096 -66832348 + AluSg/x SINE Alu 158 288 -24 23 33 0 0 chr9 75439191 75439221 -66832223 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr9 75439498 75439523 -66831921 + AT_rich Low_complexity Low_complexity 1 25 0 743 250 63 28 chr9 75439720 75439972 -66831472 + MIR SINE MIR 2 262 0 399 274 75 88 chr9 75439977 75440284 -66831160 - HAL1b LINE L1 -681 667 365 2047 126 0 3 chr9 75441934 75442249 -66829195 - AluSx SINE Alu 0 314 1 234 392 83 0 chr9 75443352 75443472 -66827972 + L2 LINE L2 3143 3272 0 2176 128 0 13 chr9 75444270 75444575 -66826869 + AluSx SINE Alu 1 301 -11 1062 280 66 10 chr9 75445251 75445644 -66825800 + MLT1J1 LTR MaLR 3 417 -29 25 90 0 0 chr9 75445777 75445844 -66825600 + AT_rich Low_complexity Low_complexity 1 67 0 219 304 43 14 chr9 75445852 75445921 -66825523 - MIR SINE MIR -24 238 168 389 250 28 56 chr9 75446517 75446661 -66824783 - MIR SINE MIR -94 168 29 276 30 0 0 chr9 75446844 75446877 -66824567 + (CA)n Simple_repeat Simple_repeat 2 34 0 234 182 26 13 chr9 75447404 75447481 -66823963 + GA-rich Low_complexity Low_complexity 4 81 0 342 284 176 11 chr9 75448278 75448454 -66822990 + MIR SINE MIR 48 252 -10 1967 110 43 0 chr9 75449403 75449685 -66821759 - AluSg SINE Alu -16 294 1 211 290 16 0 chr9 75451116 75451178 -66820266 - L2 LINE L2 -5 3308 3246 245 286 187 0 chr9 75451823 75451914 -66819530 + L2 LINE L2 3160 3267 -5 2082 122 21 0 chr9 75453119 75453407 -66818037 + AluSq SINE Alu 1 294 -19 402 98 74 0 chr9 75453407 75453529 -66817915 + (TA)n Simple_repeat Simple_repeat 1 131 0 23 54 0 0 chr9 75454996 75455033 -66816411 + AT_rich Low_complexity Low_complexity 1 37 0 2457 116 5 24 chr9 75455060 75455431 -66816013 + THE1B LTR MaLR 1 364 0 559 280 149 11 chr9 75455431 75455606 -66815838 - MIR SINE MIR -62 200 2 2249 110 0 0 chr9 75455833 75456133 -66815311 + AluSq SINE Alu 10 309 -4 2247 83 0 7 chr9 75456717 75457005 -66814439 + AluSg SINE Alu 22 307 -3 293 290 46 30 chr9 75460039 75460162 -66811282 + MIR SINE MIR 92 216 -46 482 277 155 0 chr9 75460162 75460317 -66811127 - MER5A DNA MER1_type 0 189 11 461 241 133 6 chr9 75460550 75460708 -66810736 - MER5B DNA MER1_type 0 178 1 210 26 77 0 chr9 75461287 75461326 -66810118 + (TA)n Simple_repeat Simple_repeat 1 42 0 1161 151 5 0 chr9 75461389 75461574 -66809870 + MER5A DNA MER1_type 3 188 -1 22 56 0 0 chr9 75462394 75462430 -66809014 + AT_rich Low_complexity Low_complexity 1 36 0 259 143 26 65 chr9 75462464 75462508 -66808936 + L1PB4 LINE L1 6077 6118 -38 2131 110 0 44 chr9 75462508 75462827 -66808617 + AluSx SINE Alu 1 305 -7 259 143 26 65 chr9 75462827 75462859 -66808585 + L1PB4 LINE L1 6118 6150 -6 29 28 0 0 chr9 75462860 75462896 -66808548 + AT_rich Low_complexity Low_complexity 1 36 0 1230 106 12 0 chr9 75463284 75463454 -66807990 - AluSp SINE Alu -141 172 1 467 185 19 0 chr9 75463506 75463614 -66807830 + L1ME3A LINE L1 6052 6161 -9 28 29 0 0 chr9 75463870 75463905 -66807539 + AT_rich Low_complexity Low_complexity 1 35 0 583 270 28 11 chr9 75464078 75464256 -66807188 + MIR SINE MIR 79 259 -3 1978 120 6 38 chr9 75464527 75464844 -66806600 + AluJb SINE Alu 1 307 -5 245 132 0 38 chr9 75464846 75464899 -66806545 + (GGAGA)n Simple_repeat Simple_repeat 1 51 0 25 51 0 0 chr9 75465149 75465188 -66806256 + AT_rich Low_complexity Low_complexity 1 39 0 401 330 149 18 chr9 75465703 75465924 -66805520 - MIR SINE MIR 0 262 13 2276 117 0 0 chr9 75466170 75466468 -66804976 + AluSx SINE Alu 1 298 -14 699 194 8 8 chr9 75466479 75466603 -66804841 + FLAM_A SINE Alu 1 124 -9 246 289 93 31 chr9 75466753 75466947 -66804497 + L1MC4a LINE L1 5724 5929 -1879 25 0 0 0 chr9 75467311 75467336 -66804108 + AT_rich Low_complexity Low_complexity 1 25 0 2352 93 0 28 chr9 75467360 75467681 -66803763 - AluSx SINE Alu 0 312 1 2001 75 60 0 chr9 75468849 75469114 -66802330 - AluY SINE Alu -10 301 21 2256 99 0 0 chr9 75469797 75470110 -66801334 - AluSx SINE Alu 0 313 1 467 185 19 0 chr9 75470162 75470270 -66801174 + L1ME3A LINE L1 6052 6161 -9 28 29 0 0 chr9 75470526 75470561 -66800883 + AT_rich Low_complexity Low_complexity 1 35 0 583 270 28 11 chr9 75470734 75470912 -66800532 + MIR SINE MIR 79 259 -3 1978 120 6 38 chr9 75471183 75471500 -66799944 + AluJb SINE Alu 1 307 -5 245 132 0 38 chr9 75471502 75471555 -66799889 + (GGAGA)n Simple_repeat Simple_repeat 1 51 0 25 51 0 0 chr9 75471805 75471844 -66799600 + AT_rich Low_complexity Low_complexity 1 39 0 424 321 149 18 chr9 75472359 75472580 -66798864 - MIR SINE MIR 0 262 13 234 236 111 0 chr9 75472735 75472807 -66798637 + MIR SINE MIR 181 260 -2 205 160 0 40 chr9 75473193 75473243 -66798201 + T-rich Low_complexity Low_complexity 2 49 0 393 253 193 13 chr9 75473816 75473966 -66797478 + MIR SINE MIR 20 196 -66 231 152 22 0 chr9 75476611 75476657 -66794787 - MER106A DNA MER1_type -20 216 170 1984 141 6 6 chr9 75476681 75477015 -66794429 - MER46B DNA MER2_type 0 236 28 248 123 31 46 chr9 75477052 75477117 -66794327 - MER106B DNA MER1_type -93 966 903 499 293 72 12 chr9 75477174 75477341 -66794103 + MIR SINE MIR 33 209 -53 2138 124 20 0 chr9 75477865 75478171 -66793273 + AluSq SINE Alu 1 312 -1 1279 254 176 16 chr9 75481548 75481697 -66789747 - L2 LINE L2 -4 3309 3185 327 49 0 0 chr9 75481697 75481738 -66789706 + (TG)n Simple_repeat Simple_repeat 1 41 0 1279 254 176 16 chr9 75481738 75482211 -66789233 - L2 LINE L2 -128 3185 2789 2319 75 10 0 chr9 75482211 75482503 -66788941 + AluY SINE Alu 1 295 -16 1279 254 176 16 chr9 75482503 75482693 -66788751 - L2 LINE L2 -524 2789 2373 6914 124 47 18 chr9 75484295 75485491 -66785953 + Tigger3b DNA MER2_type 1 1231 0 26 0 0 0 chr9 75486492 75486518 -66784926 + AT_rich Low_complexity Low_complexity 1 26 0 379 313 62 38 chr9 75487474 75487685 -66783759 - MIR SINE MIR -13 249 34 1122 288 58 11 chr9 75487927 75488288 -66783156 - L3 LINE CR1 -3 1574 1197 2288 106 7 0 chr9 75489081 75489383 -66782061 + AluSx SINE Alu 1 304 -8 180 235 25 123 chr9 75489441 75489522 -66781922 + L2 LINE L2 3233 3305 -8 1797 150 7 7 chr9 75489676 75489956 -66781488 + AluJb SINE Alu 14 293 -19 22 56 0 0 chr9 75490003 75490039 -66781405 + AT_rich Low_complexity Low_complexity 1 36 0 35 54 0 0 chr9 75490288 75490344 -66781100 + AT_rich Low_complexity Low_complexity 1 56 0 233 235 0 62 chr9 75490482 75490563 -66780881 + MIR3 SINE MIR 132 207 -1 1105 156 35 91 chr9 75490596 75490827 -66780617 - MER20 DNA MER1_type 0 219 2 240 333 0 0 chr9 75491809 75491878 -66779566 + MER5B DNA MER1_type 1 69 -109 816 219 33 49 chr9 75491945 75492128 -66779316 - MER5A DNA MER1_type -3 186 7 357 336 0 16 chr9 75492135 75492260 -66779184 + MIR SINE MIR 35 157 -105 6689 216 72 43 chr9 75492711 75492810 -66778634 + L1ME LINE L1 2936 3031 -3135 1619 172 13 26 chr9 75492810 75493112 -66778332 + AluJb SINE Alu 1 298 -14 6689 216 72 43 chr9 75493112 75493165 -66778279 + L1ME LINE L1 3031 3081 -3085 1760 155 69 0 chr9 75493165 75493455 -66777989 + AluSx SINE Alu 1 310 -2 6689 216 72 43 chr9 75493455 75493547 -66777897 + L1ME LINE L1 3081 3169 -2997 1932 126 56 0 chr9 75493547 75493832 -66777612 + AluSx SINE Alu 1 301 -11 6689 216 72 43 chr9 75493832 75493881 -66777563 + L1ME LINE L1 3169 3215 -2951 2106 117 3 0 chr9 75493881 75494187 -66777257 + AluSx SINE Alu 1 307 0 6689 216 72 43 chr9 75494187 75496227 -66775217 + L1ME LINE L1 3215 5195 -971 3983 133 38 2 chr9 75496227 75496806 -66774638 + MER7C DNA MER2_type 3 602 0 6689 216 72 43 chr9 75496806 75496949 -66774495 + L1ME LINE L1 5195 5332 -834 2351 148 57 38 chr9 75496949 75497369 -66774075 + MSTC LTR MaLR 1 428 0 6689 216 72 43 chr9 75497369 75497655 -66773789 + L1ME LINE L1 5332 5786 -380 718 215 0 30 chr9 75497679 75497814 -66773630 + FLAM_A SINE Alu 2 132 -1 180 0 0 0 chr9 75498176 75498196 -66773248 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 374 302 65 0 chr9 75499201 75499340 -66772104 - L1M1 LINE L1 -7187 378 231 220 194 0 60 chr9 75499599 75499666 -66771778 - L2 LINE L2 -62 3251 3189 311 335 60 16 chr9 75500027 75500212 -66771232 - MIR SINE MIR -6 256 64 2391 106 3 0 chr9 75500640 75500951 -66770493 - AluSx SINE Alu 0 312 1 2122 108 14 10 chr9 75501985 75502282 -66769162 + AluY SINE Alu 1 298 -13 229 56 139 0 chr9 75502302 75502338 -66769106 - MER5C DNA MER1_type 0 324 284 1264 131 11 0 chr9 75502531 75502722 -66768722 - AluSg/x SINE Alu 0 310 118 1553 280 98 50 chr9 75503134 75503758 -66767686 + L2 LINE L2 2289 2942 -372 2335 103 0 0 chr9 75504015 75504315 -66767129 - AluSx SINE Alu -12 300 1 2430 201 86 115 chr9 75504318 75505570 -66765874 - L1MC5 LINE L1 -32 7929 6715 2131 122 0 13 chr9 75505571 75505874 -66765570 - AluSg SINE Alu -11 299 1 404 264 136 49 chr9 75505913 75506178 -66765266 - L1ME4a LINE L1 -292 5829 5542 1690 145 3 87 chr9 75506180 75506491 -66764953 + AluJb SINE Alu 1 285 -27 874 200 11 6 chr9 75506515 75506690 -66764754 + AluSg/x SINE Alu 125 300 -10 286 213 35 50 chr9 75506773 75506894 -66764550 - L1ME4a LINE L1 -728 5456 5366 1561 207 3 20 chr9 75506928 75507227 -66764217 - AluJo SINE Alu -5 307 14 29 70 0 0 chr9 75507309 75507366 -66764078 + AT_rich Low_complexity Low_complexity 1 57 0 449 312 25 45 chr9 75507452 75507654 -66763790 - MIR SINE MIR -45 217 20 2065 127 17 0 chr9 75507769 75508068 -66763376 - AluSx SINE Alu -8 304 1 360 113 32 27 chr9 75508218 75508300 -66763144 + AluSq/x SINE Alu 102 147 -156 5256 49 36 0 chr9 75508411 75509108 -66762336 - L1PA6 LINE L1 -229 5925 5204 240 257 40 0 chr9 75509354 75509428 -66762016 - MIR SINE MIR -98 164 88 2515 128 37 70 chr9 75509510 75509970 -66761474 - L1MC1 LINE L1 -6 6327 5883 181 224 47 82 chr9 75510231 75510316 -66761128 - MER5B DNA MER1_type -70 108 27 645 214 156 7 chr9 75510960 75511114 -66760330 - MER5A DNA MER1_type -9 180 4 2417 67 3 0 chr9 75511171 75511468 -66759976 - AluY SINE Alu -13 298 1 1751 189 7 3 chr9 75511471 75511772 -66759672 - AluJb SINE Alu -10 302 1 2444 103 0 0 chr9 75512550 75512861 -66758583 + AluSq SINE Alu 1 311 -2 266 254 290 0 chr9 75512906 75513044 -66758400 + MER5B DNA MER1_type 1 178 0 404 152 25 0 chr9 75513549 75513628 -66757816 + GA-rich Low_complexity Low_complexity 2 82 0 6353 199 32 6 chr9 75513774 75515027 -66756417 - L1M2 LINE L1 -5283 1566 281 2147 162 76 2 chr9 75515026 75515446 -66755998 - L1MC1 LINE L1 -401 5777 5327 * 635 259 70 45 chr9 75515745 75515988 -66755456 + MIR SINE MIR 1 249 -13 2059 148 3 0 chr9 75515997 75516301 -66755143 + AluSq SINE Alu 1 305 -8 2171 118 0 0 chr9 75516806 75517119 -66754325 - AluSx SINE Alu 0 313 1 2052 128 3 33 chr9 75517315 75517620 -66753824 + AluSx SINE Alu 1 296 -16 2057 155 0 0 chr9 75518116 75518426 -66753018 - AluSx SINE Alu -2 310 1 260 111 0 0 chr9 75518909 75518945 -66752499 - U6 snRNA snRNA -71 36 1 572 303 121 47 chr9 75519181 75519610 -66751834 - L2 LINE L2 -337 2977 2517 834 137 0 0 chr9 75519616 75519733 -66751711 + AluSq/x SINE Alu 7 123 -189 359 174 14 0 chr9 75519772 75519841 -66751603 + AluY SINE Alu 123 192 -109 328 203 25 13 chr9 75519944 75520023 -66751421 - AluSp SINE Alu -116 187 108 1904 157 0 10 chr9 75520024 75520324 -66751120 + AluSx SINE Alu 1 297 -15 383 264 18 0 chr9 75520331 75520441 -66751003 + MIR SINE MIR 151 262 0 345 367 80 51 chr9 75520675 75521326 -66750118 - L2 LINE L2 -644 2670 2001 23 0 0 0 chr9 75521512 75521535 -66749909 + AT_rich Low_complexity Low_complexity 1 23 0 1342 160 8 34 chr9 75521541 75521778 -66749666 - AluJo SINE Alu -73 239 9 780 289 51 0 chr9 75522457 75522554 -66748890 + MIR SINE MIR 13 104 -158 2150 113 3 0 chr9 75522554 75522845 -66748599 - AluSq SINE Alu -21 292 1 780 289 51 0 chr9 75522845 75522982 -66748462 + MIR SINE MIR 104 259 -3 1952 108 0 4 chr9 75524599 75524867 -66746577 + AluSc SINE Alu 10 276 -33 321 68 0 0 chr9 75524874 75524918 -66746526 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 235 270 81 36 chr9 75524918 75525029 -66746415 - MIR SINE MIR -77 131 16 295 257 153 87 chr9 75525693 75526117 -66745327 + L2 LINE L2 1431 1882 -1432 652 215 37 174 chr9 75526138 75526678 -66744766 + L2 LINE L2 2848 3313 0 1624 163 44 7 chr9 75527120 75527415 -66744029 + AluJo SINE Alu 1 306 -6 446 156 84 194 chr9 75527600 75527683 -66743761 - L1MA4 LINE L1 -6 6294 6204 325 109 0 0 chr9 75527683 75527729 -66743715 + FRAM/FAM SINE Alu 9 54 -112 446 156 84 194 chr9 75527729 75527837 -66743607 - L1MA4 LINE L1 -96 6204 6084 2184 115 3 13 chr9 75527839 75528143 -66743301 + AluSx SINE Alu 1 301 -11 297 312 35 50 chr9 75529138 75529279 -66742165 - MIR SINE MIR -112 150 12 183 80 0 0 chr9 75530148 75530173 -66741271 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 549 146 0 0 chr9 75531553 75531635 -66739809 - Tigger1 DNA MER2_type 0 2418 2337 26 30 0 0 chr9 75532046 75532079 -66739365 + AT_rich Low_complexity Low_complexity 1 33 0 2150 109 13 3 chr9 75532154 75532456 -66738988 + AluSq SINE Alu 5 309 -4 739 167 22 7 chr9 75534219 75534357 -66737087 - MER84 LTR ERVI 0 507 368 882 119 0 32 chr9 75534516 75534679 -66736765 + FLAM_C SINE Alu 1 133 0 690 190 158 32 chr9 75534707 75534991 -66736453 - L1MC5 LINE L1 -36 7925 7606 21 36 0 0 chr9 75535972 75536000 -66735444 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 75536987 75537012 -66734432 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr9 75537622 75537644 -66733800 + (TG)n Simple_repeat Simple_repeat 2 23 0 189 256 0 0 chr9 75537905 75537948 -66733496 - MIR SINE MIR -15 247 205 414 261 158 24 chr9 75539212 75539377 -66732067 + MIR3 SINE MIR 16 202 -6 455 294 91 20 chr9 75539497 75539534 -66731910 - L1ME4a LINE L1 -188 5933 5900 1192 177 80 65 chr9 75539534 75539873 -66731571 - MER2 DNA MER2_type 0 344 1 455 294 91 20 chr9 75539873 75540131 -66731313 - L1ME4a LINE L1 -221 5900 5617 214 364 100 9 chr9 75540758 75540868 -66730576 - L2 LINE L2 0 3272 3153 413 316 71 62 chr9 75541593 75542089 -66729355 - L2 LINE L2 -337 2977 2478 24 32 0 0 chr9 75542960 75542991 -66728453 + AT_rich Low_complexity Low_complexity 1 31 0 332 155 14 0 chr9 75543113 75543184 -66728260 + T-rich Low_complexity Low_complexity 2 73 0 22 35 0 0 chr9 75543528 75543557 -66727887 + AT_rich Low_complexity Low_complexity 1 29 0 326 256 27 96 chr9 75543567 75543786 -66727658 - L1M4 LINE L1 -2948 3198 2995 218 191 0 15 chr9 75544120 75544188 -66727256 + T-rich Low_complexity Low_complexity 2 68 0 218 236 102 71 chr9 75544559 75544686 -66726758 - L3b LINE CR1 -219 1364 1234 415 178 0 0 chr9 75545198 75545271 -66726173 - 7SK RNA RNA 0 193 121 748 126 0 16 chr9 75545315 75545442 -66726002 - 7SK RNA RNA -68 125 1 294 29 0 0 chr9 75545765 75545800 -66725644 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr9 75546067 75546092 -66725352 + AT_rich Low_complexity Low_complexity 1 25 0 2328 64 0 3 chr9 75548239 75548545 -66722899 + AluY SINE Alu 1 305 0 1210 52 0 0 chr9 75548698 75548834 -66722610 + AluSq/x SINE Alu 1 136 -176 2462 97 0 0 chr9 75548834 75549145 -66722299 + AluSx SINE Alu 1 311 -1 2366 104 0 0 chr9 75549488 75549796 -66721648 - AluY SINE Alu -3 308 1 291 339 26 17 chr9 75551030 75551145 -66720299 + L2 LINE L2 3154 3269 -3 332 278 83 0 chr9 75551254 75551387 -66720057 - L1ME LINE L1 -459 5662 5519 2426 102 0 3 chr9 75551459 75551772 -66719672 + AluSx SINE Alu 1 312 0 270 0 0 0 chr9 75551788 75551818 -66719626 + (TG)n Simple_repeat Simple_repeat 1 30 0 243 270 51 95 chr9 75552335 75552472 -66718972 + L2 LINE L2 3140 3270 -2 279 267 0 0 chr9 75552983 75553058 -66718386 - MARNA DNA Mariner -216 370 296 270 77 26 0 chr9 75553232 75553271 -66718173 + MER4E LTR ERV1 653 692 -74 21 0 0 0 chr9 75553271 75553292 -66718152 + AT_rich Low_complexity Low_complexity 1 21 0 2259 121 0 3 chr9 75553586 75553899 -66717545 + AluSx SINE Alu 1 312 0 319 111 16 16 chr9 75553899 75553962 -66717482 + (GGAAA)n Simple_repeat Simple_repeat 2 64 0 2009 165 3 9 chr9 75554154 75554500 -66716944 - MER2 DNA MER2_type 0 344 1 232 250 18 0 chr9 75555899 75555955 -66715489 + MLT1J2 LTR MaLR 275 331 -119 576 211 47 23 chr9 75556066 75556237 -66715207 + HAL1 LINE L1 100 274 -2233 1505 235 151 87 chr9 75556282 75556654 -66714790 + HAL1 LINE L1 581 928 -1579 2202 125 0 0 chr9 75556654 75556950 -66714494 + AluSx SINE Alu 1 296 -16 1505 235 151 87 chr9 75556950 75557030 -66714414 + HAL1 LINE L1 928 1001 -1506 2493 120 29 2 chr9 75557030 75557439 -66714005 + L1MA2 LINE L1 5885 6304 0 1505 235 151 87 chr9 75557439 75557522 -66713922 + HAL1 LINE L1 1001 1077 -1430 1751 155 14 0 chr9 75557522 75557800 -66713644 + AluJb SINE Alu 14 295 -17 1505 235 151 87 chr9 75557800 75558522 -66712922 + HAL1 LINE L1 1077 1921 -586 231 268 122 44 chr9 75558502 75558707 -66712737 + HAL1 LINE L1 2285 2505 -2 * 1566 188 0 52 chr9 75558911 75559219 -66712225 + AluJo SINE Alu 2 293 -19 21 0 0 0 chr9 75559223 75559244 -66712200 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr9 75559305 75559329 -66712115 + (A)n Simple_repeat Simple_repeat 1 24 0 914 125 14 21 chr9 75560183 75560327 -66711117 - FLAM_C SINE Alu 0 143 1 550 84 24 0 chr9 75560490 75560573 -66710871 + MER51A LTR ERV1 469 553 -81 218 227 0 0 chr9 75560815 75560859 -66710585 + A-rich Low_complexity Low_complexity 1 44 0 1390 210 10 32 chr9 75561484 75561793 -66709651 - AluSx SINE Alu -10 302 1 21 0 0 0 chr9 75561824 75561845 -66709599 + AT_rich Low_complexity Low_complexity 1 21 0 1561 88 5 0 chr9 75561920 75562124 -66709320 + AluSp SINE Alu 103 307 -6 243 229 0 0 chr9 75562504 75562552 -66708892 + MER5B DNA MER1_type 2 49 -129 14157 133 24 30 chr9 75562564 75563515 -66707929 - Tigger1 DNA MER2_type 0 2418 1463 2410 72 0 23 chr9 75563515 75563822 -66707622 + AluY SINE Alu 1 300 -11 14157 133 24 30 chr9 75563822 75565303 -66706141 - Tigger1 DNA MER2_type -955 1463 1 1269 142 5 0 chr9 75565316 75565535 -66705909 + L1MB2 LINE L1 5685 5904 -267 1684 178 20 7 chr9 75565537 75565830 -66705614 + AluJb SINE Alu 1 297 -15 2057 121 0 19 chr9 75566530 75566837 -66704607 - AluSx SINE Alu -11 301 1 27 0 0 0 chr9 75567145 75567172 -66704272 + AT_rich Low_complexity Low_complexity 1 27 0 1399 171 83 4 chr9 75567204 75567444 -66704000 - AluJb SINE Alu -27 285 27 702 78 0 0 chr9 75567494 75567584 -66703860 + HY4 scRNA scRNA 1 90 -3 330 275 0 0 chr9 75567589 75567698 -66703746 + (TA)n Simple_repeat Simple_repeat 1 109 0 3716 185 36 11 chr9 75567861 75568575 -66702869 - MER44D DNA MER2_type 0 605 2 1487 201 56 34 chr9 75568958 75569056 -66702388 + MLT1B LTR MaLR 1 95 -295 2343 99 0 3 chr9 75569056 75569360 -66702084 + AluSq SINE Alu 1 303 -10 1487 201 56 34 chr9 75569360 75569639 -66701805 + MLT1B LTR MaLR 95 386 -4 263 231 33 55 chr9 75569792 75569883 -66701561 + MIR3 SINE MIR 96 184 -24 2226 110 0 0 chr9 75570078 75570369 -66701075 + AluSx SINE Alu 1 291 -21 2328 115 0 0 chr9 75570426 75570739 -66700705 + AluSq SINE Alu 1 313 0 23 33 0 0 chr9 75571363 75571393 -66700051 + AT_rich Low_complexity Low_complexity 1 30 0 2167 121 0 3 chr9 75571454 75571752 -66699692 + AluSx SINE Alu 1 297 -15 241 26 53 0 chr9 75571752 75571790 -66699654 + (TA)n Simple_repeat Simple_repeat 2 41 0 1371 176 53 49 chr9 75571846 75572130 -66699314 + AluJo SINE Alu 3 287 -25 685 226 0 8 chr9 75572212 75572345 -66699099 - FLAM_A SINE Alu -1 132 1 263 93 56 0 chr9 75572395 75572449 -66698995 + CT-rich Low_complexity Low_complexity 2 58 0 608 89 8 32 chr9 75572449 75572573 -66698871 + SVA Other Other 1 121 -1265 306 0 0 0 chr9 75572963 75572997 -66698447 + (T)n Simple_repeat Simple_repeat 1 34 0 2167 106 10 3 chr9 75573058 75573351 -66698093 + AluSx SINE Alu 1 295 -17 344 327 67 52 chr9 75573413 75573740 -66697704 - L1ME4a LINE L1 0 6121 5790 649 239 122 0 chr9 75574017 75574214 -66697230 - MER115 DNA AcHobo -2 691 471 302 360 8 0 chr9 75574263 75574388 -66697056 - MER115 DNA AcHobo -567 126 1 209 257 29 0 chr9 75574610 75574680 -66696764 + (TA)n Simple_repeat Simple_repeat 1 72 0 1720 178 7 24 chr9 75574960 75575258 -66696186 + AluJb SINE Alu 6 298 -14 243 311 111 34 chr9 75576799 75577034 -66694410 - L3 LINE CR1 -628 949 697 2122 133 0 3 chr9 75577059 75577359 -66694085 + AluSx SINE Alu 1 299 -13 896 200 0 0 chr9 75577396 75577541 -66693903 + FRAM SINE Alu 1 145 -31 25 31 0 0 chr9 75577546 75577578 -66693866 + AT_rich Low_complexity Low_complexity 1 32 0 34 0 0 0 chr9 75578006 75578040 -66693404 + AT_rich Low_complexity Low_complexity 1 34 0 1396 88 39 0 chr9 75578040 75578244 -66693200 - L1PA10 LINE L1 -5 6163 5952 621 180 9 0 chr9 75578652 75578763 -66692681 + FLAM_C SINE Alu 1 112 -31 848 245 25 46 chr9 75579285 75579612 -66691832 - MER46C DNA MER2_type -12 326 7 772 220 35 0 chr9 75579855 75579996 -66691448 - FAM SINE Alu -38 147 2 465 246 73 0 chr9 75581732 75581842 -66689602 + MER5A DNA MER1_type 1 118 -71 184 305 38 48 chr9 75582006 75582111 -66689333 + MIR3 SINE MIR 88 191 -17 228 258 15 0 chr9 75583476 75583542 -66687902 - L3 LINE CR1 -96 1481 1415 1329 153 0 15 chr9 75583721 75583923 -66687521 + AluSg/x SINE Alu 82 280 -30 199 304 0 0 chr9 75584214 75584260 -66687184 + L2 LINE L2 3210 3255 -17 1068 263 66 52 chr9 75584353 75584535 -66686909 - L2 LINE L2 -288 3025 2847 2214 94 21 0 chr9 75584535 75584821 -66686623 + AluSg SINE Alu 1 292 -18 1981 124 50 0 chr9 75584829 75585111 -66686333 + AluSq SINE Alu 1 296 -17 1068 263 66 52 chr9 75585111 75585345 -66686099 - L2 LINE L2 -472 2841 2599 2264 92 10 0 chr9 75585516 75585808 -66685636 - AluSq SINE Alu -12 301 7 800 163 78 0 chr9 75585813 75585954 -66685490 - MER46B DNA MER2_type -209 27 1 2219 64 0 20 chr9 75586058 75586353 -66685091 - AluY SINE Alu -21 290 2 2265 100 3 3 chr9 75587259 75587558 -66683886 + AluSq SINE Alu 1 299 -14 965 205 12 0 chr9 75588232 75588403 -66683041 - FAM SINE Alu -1 174 2 805 144 7 22 chr9 75588487 75588626 -66682818 + AluJo SINE Alu 1 137 -175 2232 111 3 0 chr9 75588943 75589241 -66682203 - AluSq SINE Alu -6 307 9 1632 168 97 175 chr9 75589272 75589839 -66681605 - Charlie1 DNA MER1_type 0 2761 1 1966 130 3 3 chr9 75590339 75590640 -66680804 + AluSx SINE Alu 1 301 -11 198 0 0 0 chr9 75591169 75591191 -66680253 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1782 138 0 45 chr9 75591194 75591506 -66679938 - AluSx SINE Alu -14 298 1 1673 136 7 28 chr9 75591583 75591869 -66679575 + AluJb SINE Alu 1 280 -32 222 37 0 0 chr9 75591872 75591899 -66679545 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 198 250 0 0 chr9 75591958 75592010 -66679434 - L2 LINE L2 0 3313 3262 269 240 165 8 chr9 75592085 75592206 -66679238 - L2 LINE L2 -4 3309 3170 442 257 169 0 chr9 75592417 75592565 -66678879 + MIR SINE MIR 90 262 0 189 0 0 0 chr9 75592945 75592966 -66678478 + (A)n Simple_repeat Simple_repeat 1 21 0 1777 234 21 23 chr9 75593360 75593877 -66677567 + L1M1 LINE L1 2328 2843 -3303 2935 158 5 52 chr9 75593884 75594854 -66676590 + L1M1 LINE L1 4735 5650 -653 2417 125 32 5 chr9 75594940 75595341 -66676103 - L1MB2 LINE L1 0 6171 5760 248 273 78 0 chr9 75595555 75595632 -66675812 + L2 LINE L2 3228 3310 -3 274 221 87 0 chr9 75595703 75595807 -66675637 + L1ME4a LINE L1 5834 5946 -175 714 205 0 16 chr9 75595807 75595934 -66675510 + FLAM_A SINE Alu 1 125 -8 2258 98 3 0 chr9 75595954 75596260 -66675184 + AluSp SINE Alu 4 310 -3 1855 109 7 7 chr9 75596292 75596577 -66674867 + AluY SINE Alu 1 285 -26 435 68 0 0 chr9 75596577 75596636 -66674808 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1181 258 52 12 chr9 75596871 75597200 -66674244 + HAL1 LINE L1 1664 2005 -502 693 257 69 58 chr9 75597245 75597638 -66673806 + HAL1 LINE L1 2111 2507 0 845 139 31 0 chr9 75597876 75598005 -66673439 + FLAM_C SINE Alu 1 133 0 198 103 0 0 chr9 75598588 75598617 -66672827 + (T)n Simple_repeat Simple_repeat 1 29 0 279 254 23 85 chr9 75598658 75598788 -66672656 + MIR SINE MIR 96 217 -45 555 266 144 11 chr9 75598795 75598983 -66672461 - MIR SINE MIR -31 231 19 211 251 219 54 chr9 75600207 75600408 -66671036 + MIR SINE MIR 35 262 0 188 100 25 0 chr9 75600412 75600452 -66670992 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 1538 159 52 7 chr9 75600478 75600711 -66670733 - AluJb SINE Alu 0 363 111 423 0 0 0 chr9 75600711 75600758 -66670686 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1538 159 52 7 chr9 75600758 75600875 -66670569 - AluJb SINE Alu -252 111 1 1492 155 4 4 chr9 75601188 75601479 -66669965 - AluJb SINE Alu 0 320 30 484 214 36 71 chr9 75601882 75602022 -66669422 + MER5A DNA MER1_type 18 152 -37 1786 162 0 13 chr9 75602056 75602365 -66669079 + AluJb SINE Alu 3 307 -5 21 0 0 0 chr9 75602406 75602427 -66669017 + AT_rich Low_complexity Low_complexity 1 21 0 325 310 0 11 chr9 75602447 75602534 -66668910 - L2 LINE L2 -1 3271 3186 19294 131 29 14 chr9 75602600 75602788 -66668656 + L1M1 LINE L1 17 201 -7364 3465 124 85 8 chr9 75602788 75603378 -66668066 - L1PA14 LINE L1 0 6161 5527 19294 131 29 14 chr9 75603378 75605454 -66665990 + L1M1 LINE L1 201 2340 -5225 1700 179 7 3 chr9 75605454 75605745 -66665699 + AluJb SINE Alu 9 300 -12 19294 131 29 14 chr9 75605745 75606456 -66664988 + L1M1 LINE L1 2340 3039 -4526 2166 106 0 3 chr9 75606643 75606944 -66664500 - AluSx SINE Alu -12 300 1 257 193 0 0 chr9 75607893 75607950 -66663494 - L1ME4a LINE L1 -1 6120 6064 349 253 12 0 chr9 75607950 75608033 -66663411 + L2 LINE L2 3217 3300 -13 2174 83 0 3 chr9 75608034 75608322 -66663122 - AluSg SINE Alu -17 293 7 784 108 0 0 chr9 75608658 75608760 -66662684 - U6 snRNA snRNA -5 102 1 363 23 0 0 chr9 75609945 75609989 -66661455 + (CA)n Simple_repeat Simple_repeat 1 44 0 1531 202 0 3 chr9 75609991 75610278 -66661166 - AluJo SINE Alu -26 286 1 259 277 139 29 chr9 75610481 75610618 -66660826 - MIR SINE MIR 0 262 111 1492 199 6 54 chr9 75611456 75611773 -66659671 + AluJb SINE Alu 1 302 0 490 163 0 0 chr9 75611945 75612025 -66659419 - MADE1 DNA Mariner 0 80 1 369 312 57 17 chr9 75612230 75612531 -66658913 - L1M4 LINE L1 -1161 4985 4673 207 0 0 0 chr9 75612547 75612570 -66658874 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6103 82 17 44 chr9 75612577 75613538 -66657906 - SVA Other Other -17 1369 435 363 214 250 0 chr9 75613900 75614012 -66657432 - MER117 DNA MER1_type -47 150 11 203 156 0 0 chr9 75614759 75614791 -66656653 - MIR SINE MIR -63 145 114 288 0 0 0 chr9 75615879 75615911 -66655533 + (CA)n Simple_repeat Simple_repeat 1 32 0 182 239 22 0 chr9 75616286 75616332 -66655112 + L2 LINE L2 3012 3058 -214 847 210 85 28 chr9 75616793 75617041 -66654403 + L2 LINE L2 3039 3300 -13 186 43 0 0 chr9 75617041 75617064 -66654380 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 213 290 145 32 chr9 75617529 75617653 -66653791 - L2 LINE L2 -214 3058 2921 938 306 71 47 chr9 75618362 75618458 -66652986 + L1M4 LINE L1 3070 3162 -2984 1652 131 67 25 chr9 75618458 75618740 -66652704 + AluSx SINE Alu 9 302 -10 938 306 71 47 chr9 75618740 75619721 -66651723 + L1M4 LINE L1 3162 4173 -1973 604 250 76 0 chr9 75620349 75620493 -66650951 + MIR SINE MIR 1 155 -107 * 827 256 97 0 chr9 75620486 75620713 -66650731 - MIR SINE MIR -1 261 13 1157 117 58 16 chr9 75621055 75621243 -66650201 - AluJo SINE Alu -106 206 11 203 348 144 0 chr9 75621327 75621445 -66649999 + MIR3 SINE MIR 53 187 -21 2031 145 0 0 chr9 75622645 75622956 -66648488 - AluSx SINE Alu -1 311 1 189 289 0 0 chr9 75623498 75623543 -66647901 - MIR SINE MIR -56 152 108 2141 109 3 0 chr9 75623974 75624268 -66647176 + AluSp SINE Alu 1 295 -18 352 270 11 0 chr9 75624424 75624513 -66646931 + MER117 DNA MER1_type 1 90 -107 717 255 108 47 chr9 75624777 75625055 -66646389 - MLT1I LTR MaLR -8 401 107 348 242 133 8 chr9 75625115 75625235 -66646209 + MIR SINE MIR 116 250 -12 326 193 23 34 chr9 75625855 75625943 -66645501 - MIR SINE MIR -10 252 166 736 253 142 4 chr9 75626077 75626302 -66645142 - MIR SINE MIR -5 257 2 552 310 34 57 chr9 75626328 75626625 -66644819 + L3 LINE CR1 1249 1538 -39 186 43 0 0 chr9 75628198 75628221 -66643223 + (TG)n Simple_repeat Simple_repeat 2 24 0 355 289 10 0 chr9 75628714 75628818 -66642626 + MIR SINE MIR 32 136 -126 198 287 26 61 chr9 75628898 75629013 -66642431 - MIR SINE MIR -40 222 112 437 274 39 33 chr9 75629901 75630054 -66641390 + MIR SINE MIR 2 155 -107 478 215 74 0 chr9 75630064 75630185 -66641259 - MIR SINE MIR -2 260 131 37 0 0 0 chr9 75630379 75630416 -66641028 + AT_rich Low_complexity Low_complexity 1 37 0 750 273 79 59 chr9 75630624 75631030 -66640414 + MLT1K LTR MaLR 160 573 -15 309 280 105 59 chr9 75631374 75631713 -66639731 + L2 LINE L2 2712 3143 -129 441 297 72 65 chr9 75631734 75632024 -66639420 + L2 LINE L2 2936 3227 -86 566 260 32 0 chr9 75633120 75633274 -66638170 - MLT1I LTR MaLR -15 394 236 531 322 33 40 chr9 75633420 75633693 -66637751 - MLT1I LTR MaLR -132 277 7 664 206 21 32 chr9 75633911 75634100 -66637344 + L1M4 LINE L1 4132 4318 -1828 744 175 0 0 chr9 75634218 75634338 -66637106 + FLAM_A SINE Alu 1 120 -13 954 275 0 4 chr9 75634901 75635141 -66636303 + MIR SINE MIR 1 239 -23 417 316 98 57 chr9 75635805 75636049 -66635395 - L2 LINE L2 0 3272 3019 402 264 40 17 chr9 75636299 75636467 -66634977 - MIR SINE MIR -72 136 19 398 287 173 7 chr9 75636734 75636884 -66634560 + MIR3 SINE MIR 20 194 -14 2508 160 49 39 chr9 75637100 75637594 -66633850 + MLT1D LTR MaLR 1 499 -6 574 208 135 78 chr9 75637765 75637957 -66633487 - MIR SINE MIR -36 226 24 885 258 98 41 chr9 75638160 75638579 -66632865 + MLT1J LTR MaLR 69 511 0 2072 115 0 13 chr9 75638868 75639181 -66632263 - AluSg SINE Alu -1 309 1 250 307 114 0 chr9 75639271 75639385 -66632059 - L3 LINE CR1 -36 1541 1415 285 362 8 8 chr9 75639614 75639741 -66631703 + L2 LINE L2 3145 3271 -1 372 290 32 32 chr9 75640060 75640184 -66631260 + MIR SINE MIR 33 156 -106 1019 82 0 0 chr9 75640400 75640535 -66630909 - L1P3 LINE L1 -585 5569 5435 896 218 124 0 chr9 75641906 75642099 -66629345 - MIR SINE MIR -26 236 20 257 326 83 21 chr9 75642391 75642535 -66628909 + L2 LINE L2 2826 2978 -294 327 262 13 42 chr9 75643970 75644128 -66627316 - MIR SINE MIR -48 214 64 478 281 40 62 chr9 75644173 75644397 -66627047 + MIR SINE MIR 34 252 -10 420 238 87 35 chr9 75644442 75644614 -66626830 - L2 LINE L2 -182 3090 2910 806 309 23 15 chr9 75645286 75645777 -66625667 - LTR67 LTR ERVL 0 557 19 713 258 96 37 chr9 75646399 75646721 -66624723 - MLT1D LTR MaLR -164 341 1 368 346 10 0 chr9 75646865 75646969 -66624475 + L2 LINE L2 3159 3263 -9 951 221 77 17 chr9 75647140 75647375 -66624069 + MIR SINE MIR 14 262 0 186 228 70 0 chr9 75648267 75648324 -66623120 + MIR SINE MIR 61 121 -87 298 346 46 20 chr9 75648331 75648484 -66622960 + L3 LINE CR1 1272 1428 -149 514 269 123 102 chr9 75648878 75649327 -66622117 - L2 LINE L2 0 3272 2815 288 273 81 87 chr9 75649676 75649848 -66621596 + MIR3 SINE MIR 32 202 -6 499 243 18 59 chr9 75650431 75650600 -66620844 + L2 LINE L2 2898 3059 -213 340 255 82 65 chr9 75650876 75651060 -66620384 - MIR SINE MIR -56 206 20 812 158 0 22 chr9 75652043 75652182 -66619262 + AluJo SINE Alu 5 140 -172 824 153 0 0 chr9 75652219 75652337 -66619107 + AluJo SINE Alu 129 246 -66 331 258 135 0 chr9 75652340 75652429 -66619015 + L2 LINE L2 3213 3313 0 8273 107 30 17 chr9 75652614 75653190 -66618254 - Tigger1 DNA MER2_type -1129 1289 722 1997 150 7 0 chr9 75653190 75653483 -66617961 - AluJo SINE Alu -13 299 5 8273 107 30 17 chr9 75653483 75654176 -66617268 - Tigger1 DNA MER2_type -1696 722 4 483 235 134 32 chr9 75654378 75654565 -66616879 + MER102a DNA MER1_type 114 319 -11 21 82 0 0 chr9 75654793 75654842 -66616602 + AT_rich Low_complexity Low_complexity 1 49 0 2083 167 0 0 chr9 75654883 75655194 -66616250 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr9 75655212 75655233 -66616211 + AT_rich Low_complexity Low_complexity 1 21 0 300 294 100 18 chr9 75655283 75655611 -66615833 + L1MC4a LINE L1 4498 4850 -1296 1817 153 53 0 chr9 75655796 75656078 -66615366 - AluJo SINE Alu -15 297 1 414 286 82 18 chr9 75656136 75656307 -66615137 + L1MC4a LINE L1 5119 5300 -846 524 267 61 113 chr9 75656378 75656934 -66614510 + L1MC4a LINE L1 5356 5592 -529 384 237 53 24 chr9 75657142 75657311 -66614133 - MER20B DNA MER1_type -5 778 605 276 197 0 14 chr9 75657913 75657984 -66613460 - LTR37B LTR ERV1 0 468 399 2125 103 0 66 chr9 75657989 75658309 -66613135 - AluY SINE Alu -12 299 1 2293 112 3 0 chr9 75658367 75658672 -66612772 - AluY SINE Alu -5 306 1 7638 157 62 4 chr9 75658674 75660689 -66610755 - L1 LINE L1 -3319 3529 1394 842 215 115 64 chr9 75660790 75661102 -66610342 - MLT1C LTR MaLR -104 363 36 577 324 134 18 chr9 75661115 75661495 -66609949 - MLT1K LTR MaLR -158 430 7 571 293 57 25 chr9 75661535 75661815 -66609629 + L3 LINE CR1 1245 1533 -44 505 214 209 16 chr9 75661815 75661874 -66609570 + MER112 DNA MER1_type 1 47 -213 297 0 0 0 chr9 75661874 75661907 -66609537 + (CA)n Simple_repeat Simple_repeat 2 34 0 505 214 209 16 chr9 75661907 75662029 -66609415 + MER112 DNA MER1_type 47 217 -43 272 224 17 0 chr9 75662038 75662096 -66609348 + L3 LINE CR1 1518 1576 -1 378 0 0 0 chr9 75662661 75662703 -66608741 + (TG)n Simple_repeat Simple_repeat 1 42 0 232 235 0 0 chr9 75662757 75662808 -66608636 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 1751 205 77 12 chr9 75662826 75663241 -66608203 - L2 LINE L2 0 3313 2872 541 182 9 0 chr9 75663241 75663351 -66608093 - LTR16A LTR ERVL -19 431 321 731 311 5 5 chr9 75663359 75663581 -66607863 - LTR16A LTR ERVL -93 357 136 1459 259 163 6 chr9 75663696 75664205 -66607239 - L2 LINE L2 -511 2803 2215 191 271 42 0 chr9 75664484 75664532 -66606912 + L3b LINE CR1 1517 1566 -17 951 126 9 37 chr9 75664934 75665149 -66606295 + L1M1 LINE L1 3036 3244 -4321 2059 141 0 20 chr9 75665150 75665455 -66605989 + AluSx SINE Alu 1 299 -13 4465 185 36 4 chr9 75665483 75666629 -66604815 + L1M1 LINE L1 3399 4583 -2982 376 127 0 14 chr9 75666768 75666839 -66604605 + MER53 DNA DNA 108 177 -12 1186 139 0 0 chr9 75666955 75667127 -66604317 - AluSg/x SINE Alu -4 308 137 414 223 183 30 chr9 75667261 75667458 -66603986 + MLT1H LTR MaLR 5 231 -318 2007 144 0 41 chr9 75667660 75667980 -66603464 + AluSg SINE Alu 1 307 -3 1714 160 3 17 chr9 75668034 75668345 -66603099 - AluJb SINE Alu 0 307 1 25 0 0 0 chr9 75668353 75668378 -66603066 + AT_rich Low_complexity Low_complexity 1 25 0 2136 108 0 10 chr9 75669353 75669689 -66601755 - AluSx SINE Alu 0 312 1 241 68 0 0 chr9 75669743 75669787 -66601657 + Alu SINE Alu 260 303 0 1533 176 20 46 chr9 75669803 75670105 -66601339 + AluJo SINE Alu 8 301 -11 277 247 22 45 chr9 75670191 75670280 -66601164 - L1ME4a LINE L1 -70 6051 5965 1452 127 35 0 chr9 75670398 75670627 -66600817 + LTR54 LTR ERV1 1 237 -273 962 136 26 19 chr9 75670641 75670796 -66600648 - AluSg/x SINE Alu -4 308 153 839 83 13 83 chr9 75670857 75670915 -66600529 - L1PB1 LINE L1 -2 6149 6088 2428 93 3 6 chr9 75670915 75671226 -66600218 - AluSp SINE Alu -3 310 1 839 83 13 83 chr9 75671226 75671323 -66600121 - L1PB1 LINE L1 -63 6088 6005 1190 123 21 0 chr9 75671437 75671624 -66599820 - MLT1B LTR MaLR -199 191 1 715 226 0 0 chr9 75672353 75672486 -66598958 + FLAM_A SINE Alu 1 133 0 378 276 0 9 chr9 75673149 75673254 -66598190 - MLT1J2 LTR MaLR 0 450 347 244 167 21 0 chr9 75673238 75673286 -66598158 + MLT1E1 LTR MaLR 507 555 -99 * 1050 227 53 27 chr9 75673321 75673621 -66597823 - MLT1J2 LTR MaLR -130 320 13 196 132 0 132 chr9 75673958 75674011 -66597433 - L2 LINE L2 -10 3262 3217 1913 161 6 6 chr9 75675811 75676122 -66595322 + AluJb SINE Alu 1 311 -1 907 267 5 9 chr9 75676248 75676469 -66594975 + MIR SINE MIR 32 251 -11 544 118 45 27 chr9 75676483 75676593 -66594851 - MLT1C LTR MaLR -7 460 349 329 210 328 0 chr9 75676745 75676864 -66594580 - L3 LINE CR1 -119 1458 1301 429 70 0 0 chr9 75677817 75677874 -66593570 + (CA)n Simple_repeat Simple_repeat 1 57 0 181 310 50 40 chr9 75677903 75678003 -66593441 + L3 LINE CR1 1357 1457 -120 702 226 159 26 chr9 75678155 75678381 -66593063 - MIR SINE MIR -3 259 4 344 261 194 37 chr9 75678391 75678525 -66592919 - MIR SINE MIR -106 156 2 199 308 60 60 chr9 75678613 75678746 -66592698 + L2 LINE L2 2921 3053 -219 348 133 0 0 chr9 75680774 75680834 -66590610 + (GA)n Simple_repeat Simple_repeat 2 61 0 302 273 41 14 chr9 75681553 75681738 -66589706 - MER20B DNA MER1_type -543 240 6 389 278 38 41 chr9 75682728 75682913 -66588531 + MIR3 SINE MIR 11 192 -61 412 224 121 0 chr9 75683070 75683186 -66588258 - MIR3 SINE MIR -44 164 35 776 274 41 0 chr9 75683302 75683521 -66587923 + MIR SINE MIR 35 262 0 717 161 0 0 chr9 75685324 75685473 -66585971 + (TG)n Simple_repeat Simple_repeat 2 150 0 202 214 0 0 chr9 75685802 75685844 -66585600 - MIR SINE MIR -109 153 112 938 271 63 48 chr9 75685889 75686432 -66585012 + LTR67 LTR ERVL 7 557 0 799 269 29 29 chr9 75686603 75686848 -66584596 + MIR SINE MIR 6 250 -12 501 303 46 7 chr9 75687268 75687420 -66584024 - MER91A DNA MER1_type -4 192 35 503 233 67 0 chr9 75689059 75689179 -66582265 + MIR SINE MIR 133 260 -2 24 0 0 0 chr9 75689666 75689690 -66581754 + AT_rich Low_complexity Low_complexity 1 24 0 2241 85 4 0 chr9 75689969 75690275 -66581169 + AluSq SINE Alu 1 307 0 2313 112 0 13 chr9 75690413 75690727 -66580717 - AluSx SINE Alu -2 310 1 1182 232 124 3 chr9 75690881 75691187 -66580257 - MER2 DNA MER2_type -1 343 1 200 133 0 0 chr9 75691200 75691230 -66580214 - L2 LINE L2 -21 3292 3263 270 0 0 0 chr9 75691265 75691295 -66580149 + (TG)n Simple_repeat Simple_repeat 1 30 0 1645 153 28 65 chr9 75691376 75691658 -66579786 - L1MA4 LINE L1 -6 6294 6030 2043 153 0 3 chr9 75691658 75691971 -66579473 - AluJb SINE Alu 0 312 1 1645 153 28 65 chr9 75691971 75692086 -66579358 - L1MA4 LINE L1 -270 6030 5912 251 222 0 14 chr9 75692764 75692836 -66578608 + CT-rich Low_complexity Low_complexity 1 71 0 189 200 0 91 chr9 75694361 75694416 -66577028 + L2 LINE L2 2927 2976 -337 243 233 78 44 chr9 75694744 75694834 -66576610 + MIR SINE MIR 162 254 -8 1341 77 0 0 chr9 75694863 75695099 -66576345 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 301 183 49 12 chr9 75695200 75695282 -66576162 - AluSg/x SINE Alu -111 191 107 1935 134 43 3 chr9 75695804 75696103 -66575341 + AluSx SINE Alu 1 311 -1 246 315 91 0 chr9 75696719 75696862 -66574582 + MIR3 SINE MIR 29 184 -24 223 292 75 37 chr9 75697024 75697185 -66574259 + MIR SINE MIR 9 175 -87 973 163 44 20 chr9 75697299 75697502 -66573942 + L1MD1 LINE L1 6029 6236 -6 418 275 77 97 chr9 75697594 75697841 -66573603 + L2 LINE L2 3030 3271 -1 2196 109 10 0 chr9 75698030 75698333 -66573111 + AluSp SINE Alu 1 306 -7 539 281 19 17 chr9 75698773 75698964 -66572480 + MIR SINE MIR 5 194 -61 292 297 23 23 chr9 75699143 75699271 -66572173 - MIR3 SINE MIR 0 208 81 314 300 48 62 chr9 75699839 75700049 -66571395 - L1MC4 LINE L1 -7 8035 7829 445 219 7 70 chr9 75700082 75700242 -66571202 - L1ME2 LINE L1 0 6166 6013 366 23 0 0 chr9 75701522 75701565 -66569879 + (CA)n Simple_repeat Simple_repeat 2 44 0 1774 175 7 0 chr9 75701900 75702192 -66569252 + AluJo SINE Alu 1 294 -18 719 242 45 6 chr9 75702277 75702455 -66568989 - MIR SINE MIR -70 192 8 1378 93 51 9 chr9 75703205 75703421 -66568023 - MER30 DNA MER1_type -5 225 1 1185 229 231 21 chr9 75703426 75703739 -66567705 - L1M4 LINE L1 -1749 4397 4151 2357 109 0 0 chr9 75703739 75704051 -66567393 - AluSx SINE Alu 0 312 1 1185 229 231 21 chr9 75704051 75704262 -66567182 - L1M4 LINE L1 -1995 4151 3763 28 0 0 0 chr9 75704724 75704752 -66566692 + AT_rich Low_complexity Low_complexity 1 28 0 2099 127 20 0 chr9 75705144 75705444 -66566000 + AluSx SINE Alu 1 306 -6 423 0 0 0 chr9 75705621 75705668 -66565776 + (TG)n Simple_repeat Simple_repeat 2 48 0 2504 47 7 3 chr9 75705724 75706020 -66565424 + AluY SINE Alu 2 298 -13 331 291 110 11 chr9 75707136 75707318 -66564126 + L1MC/D LINE L1 5410 5609 -2199 2185 99 3 0 chr9 75707321 75707603 -66563841 + AluSx SINE Alu 1 283 -29 204 40 0 0 chr9 75707606 75707631 -66563813 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 291 240 77 0 chr9 75707769 75707873 -66563571 + L1MC/D LINE L1 5683 5794 -2014 770 234 76 0 chr9 75707929 75708126 -66563318 - MER58A DNA MER1_type 0 224 13 1944 139 17 10 chr9 75708458 75708753 -66562691 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr9 75708813 75708835 -66562609 + AT_rich Low_complexity Low_complexity 1 22 0 229 200 20 0 chr9 75708836 75708886 -66562558 - MER66B LTR ERV1 -141 345 295 744 140 73 18 chr9 75708926 75709090 -66562354 - MER33 DNA MER1_type -144 180 8 726 260 145 56 chr9 75713565 75714111 -66557333 - L2 LINE L2 -2 3311 2720 23 0 0 0 chr9 75714121 75714144 -66557300 + AT_rich Low_complexity Low_complexity 1 23 0 284 291 137 46 chr9 75716106 75716281 -66555163 - MIR SINE MIR -24 238 48 240 322 72 50 chr9 75716802 75716982 -66554462 + L2 LINE L2 2109 2292 -1022 1173 187 59 100 chr9 75717172 75717562 -66553882 - MLT1B LTR MaLR -2 388 15 708 154 73 133 chr9 75717664 75717897 -66553547 - MER20 DNA MER1_type 0 219 1 194 348 52 52 chr9 75717933 75718068 -66553376 + L2 LINE L2 2609 2743 -571 277 246 159 40 chr9 75718327 75718453 -66552991 + L2 LINE L2 3173 3313 0 2280 112 0 0 chr9 75719212 75719515 -66551929 - AluSx SINE Alu -9 303 1 2396 87 3 0 chr9 75720065 75720365 -66551079 + AluSc SINE Alu 1 301 -8 278 241 45 36 chr9 75720522 75720634 -66550810 - L1MEd LINE L1 -3872 2257 2145 864 217 127 30 chr9 75720667 75720934 -66550510 - L1MC4 LINE L1 -1055 6987 6695 229 250 0 0 chr9 75721017 75721085 -66550359 - L1MC4a LINE L1 -1190 6618 6551 272 284 140 12 chr9 75721114 75721357 -66550087 - L1MEd LINE L1 -4817 1493 1220 256 255 35 23 chr9 75721413 75721583 -66549861 - L1MEd LINE L1 -4933 1186 1014 436 283 87 46 chr9 75721592 75721811 -66549633 - L1MEd LINE L1 -5284 835 608 739 161 105 12 chr9 75721811 75721973 -66549471 - THE1C LTR MaLR -198 177 1 1485 215 0 17 chr9 75722101 75722403 -66549041 + AluJo SINE Alu 12 308 -4 326 390 81 5 chr9 75722412 75722622 -66548822 + L1ME4a LINE L1 5371 5596 -2212 512 268 101 0 chr9 75722659 75722838 -66548606 + MER58C DNA MER1_type 1 197 -18 245 215 131 19 chr9 75723077 75723184 -66548260 + L1ME4a LINE L1 5929 6047 -74 775 200 0 0 chr9 75723289 75723414 -66548030 + FLAM_A SINE Alu 1 125 -8 24 32 0 0 chr9 75723415 75723446 -66547998 + AT_rich Low_complexity Low_complexity 1 31 0 238 274 131 12 chr9 75723489 75723573 -66547871 + L2 LINE L2 3176 3269 -3 300 259 181 0 chr9 75723575 75723691 -66547753 + L1MC/D LINE L1 5362 5498 -2310 2255 207 51 21 chr9 75723711 75724319 -66547125 - L1ME1 LINE L1 -3 6163 5538 201 271 47 47 chr9 75725220 75725305 -66546139 + L2 LINE L2 3187 3271 -42 2063 117 7 14 chr9 75725632 75725922 -66545522 + AluSx SINE Alu 8 295 -17 217 219 16 78 chr9 75725936 75726000 -66545444 - MIR SINE MIR -96 112 52 206 305 94 31 chr9 75726689 75726722 -66544722 + MIR SINE MIR 119 148 -114 1647 139 146 3 chr9 75726722 75727038 -66544406 - MER46B DNA MER2_type 0 236 1 206 305 94 31 chr9 75727038 75727132 -66544312 + MIR SINE MIR 148 254 -8 402 221 327 50 chr9 75727386 75727585 -66543859 + MIR SINE MIR 2 255 -7 1109 139 0 35 chr9 75728238 75728410 -66543034 - FRAM SINE Alu -10 166 1 297 252 146 33 chr9 75730843 75730994 -66540450 + MIR SINE MIR 84 251 -11 238 325 102 20 chr9 75731262 75731459 -66539985 - L1ME LINE L1 -446 5675 5463 779 129 6 124 chr9 75731460 75731638 -66539806 + Tigger1 DNA MER2_type 1 157 -2261 * 1067 126 96 5 chr9 75731627 75731826 -66539618 + Tigger1 DNA MER2_type 2202 2418 0 2062 261 50 15 chr9 75731894 75732495 -66538949 - HERVL40 LTR ERVL -2215 3315 2694 317 152 106 0 chr9 75732838 75732904 -66538540 + MER76 LTR ERV 531 603 -85 771 153 62 0 chr9 75733153 75733297 -66538147 + Ricksha DNA DNA 2943 3095 -156 5516 159 84 28 chr9 75733451 75734167 -66537277 + Ricksha_b DNA DNA 26 701 -2564 2242 114 3 0 chr9 75734167 75734474 -66536970 - AluSx SINE Alu -4 308 1 5516 159 84 28 chr9 75734474 75734489 -66536955 + Ricksha_b DNA DNA 701 714 -2551 2106 139 10 0 chr9 75734489 75734798 -66536646 - AluSx SINE Alu 0 312 1 5516 159 84 28 chr9 75734798 75735270 -66536174 + Ricksha_b DNA DNA 714 1652 -13 633 276 62 0 chr9 75735398 75735608 -66535836 - HERVL40 LTR ERVL -4384 1146 924 390 168 36 9 chr9 75735851 75735938 -66535506 - LTR40b LTR ERVL 0 465 368 631 198 51 28 chr9 75735938 75736115 -66535329 - L1MD3 LINE L1 -47 7948 7768 301 205 77 0 chr9 75736118 75736196 -66535248 - L1MEc LINE L1 -4001 2395 2312 4741 121 53 13 chr9 75736199 75737035 -66534409 - L1MA4A LINE L1 -6 6999 6131 356 189 33 39 chr9 75737731 75737911 -66533533 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 30 83 0 0 chr9 75737926 75737998 -66533446 + AT_rich Low_complexity Low_complexity 1 72 0 2034 97 7 17 chr9 75737998 75738287 -66533157 - AluSg SINE Alu -24 286 1 490 106 138 0 chr9 75738288 75738382 -66533062 - L1MA4A LINE L1 -862 6143 6037 * 4368 52 31 2 chr9 75738380 75739000 -66532444 + L1P LINE L1 2641 3278 -2868 * 6124 161 21 84 chr9 75738997 75739403 -66532041 - L1MA4A LINE L1 -1427 5421 4991 873 119 0 0 chr9 75739403 75739521 -66531923 + FLAM_C SINE Alu 1 118 -15 6124 161 21 84 chr9 75739521 75740212 -66531232 - L1MA4A LINE L1 -1857 4991 4459 1831 107 69 4 chr9 75740212 75740497 -66530947 - AluSc SINE Alu 0 302 1 6124 161 21 84 chr9 75740497 75741041 -66530403 - L1MA4A LINE L1 -2389 4459 3882 5521 140 29 38 chr9 75741019 75743046 -66528398 - L1PB2 LINE L1 0 6853 4833 * 770 167 16 0 chr9 75743054 75743180 -66528264 - FLAM_A SINE Alu -1 132 5 11227 176 47 23 chr9 75743199 75743390 -66528054 - L1MA4A LINE L1 -2994 3854 3669 1424 189 74 11 chr9 75743390 75743660 -66527784 - AluJo SINE Alu -25 287 1 11227 176 47 23 chr9 75743660 75743703 -66527741 - L1MA4A LINE L1 -3179 3669 3628 1731 181 7 0 chr9 75743703 75743990 -66527454 + AluJb SINE Alu 1 289 -23 11227 176 47 23 chr9 75743990 75744101 -66527343 - L1MA4A LINE L1 -3220 3628 3521 2449 87 0 3 chr9 75744101 75744413 -66527031 - AluSx SINE Alu -1 311 1 11227 176 47 23 chr9 75744413 75747412 -66524032 - L1MA4A LINE L1 -3327 3521 6 1357 171 194 20 chr9 75747414 75747858 -66523586 - L1MCc LINE L1 -4070 3052 2532 1383 210 101 6 chr9 75747880 75748366 -66523078 + MLT1F LTR MaLR 1 530 -12 2345 267 115 33 chr9 75748366 75748825 -66522619 - L1MCc LINE L1 -4537 2404 1984 2130 132 0 0 chr9 75748825 75749136 -66522308 - AluSq SINE Alu -2 311 1 2345 267 115 33 chr9 75749136 75750406 -66521038 - L1MCc LINE L1 -4957 1984 372 2968 159 68 0 chr9 75750406 75750933 -66520511 + Tigger1 DNA MER2_type 1747 2309 -109 1129 142 0 0 chr9 75750933 75751095 -66520349 - AluJb SINE Alu -18 294 133 186 71 0 0 chr9 75751095 75751123 -66520321 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1779 135 7 54 chr9 75751123 75751419 -66520025 - AluSx SINE Alu -30 282 1 728 164 0 0 chr9 75751419 75751535 -66519909 + Tigger1 DNA MER2_type 2302 2417 -1 2339 93 3 7 chr9 75751636 75751938 -66519506 + AluSx SINE Alu 1 301 -11 25 65 0 0 chr9 75751961 75752007 -66519437 + AT_rich Low_complexity Low_complexity 1 46 0 461 279 65 68 chr9 75752029 75752204 -66519240 - L1MC/D LINE L1 -2062 5746 5571 2205 96 3 16 chr9 75752204 75752507 -66518937 - AluSq SINE Alu -14 299 1 461 279 65 68 chr9 75752507 75752625 -66518819 - L1MC/D LINE L1 -2237 5571 5454 2117 239 97 29 chr9 75752636 75753388 -66518056 + L1MEc LINE L1 369 1171 -5225 221 0 0 33 chr9 75753400 75753430 -66518014 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 375 211 221 47 chr9 75753563 75753753 -66517691 + L2 LINE L2 3091 3313 0 603 294 64 17 chr9 75753877 75754173 -66517271 - L2 LINE L2 0 3313 3004 369 233 37 55 chr9 75754509 75754672 -66516772 + L1MEc LINE L1 1975 2134 -4262 787 224 31 47 chr9 75754699 75754832 -66516612 + L1MEc LINE L1 2979 3108 -3107 2066 106 35 0 chr9 75754832 75755114 -66516330 + AluSx SINE Alu 1 292 -20 787 224 31 47 chr9 75755114 75755234 -66516210 + L1MEc LINE L1 3108 3228 -2987 527 245 108 32 chr9 75755361 75755610 -66515834 + L1MEc LINE L1 4411 4678 -1537 413 185 148 0 chr9 75755718 75755826 -66515618 + L1MA10 LINE L1 6210 6333 -1 1276 164 10 0 chr9 75755847 75756054 -66515390 + AluJb SINE Alu 80 288 -24 1771 189 3 7 chr9 75756061 75756362 -66515082 + AluJb SINE Alu 1 300 -12 1686 140 60 7 chr9 75756805 75757090 -66514354 - AluJb SINE Alu -12 300 1 847 220 6 0 chr9 75757409 75757582 -66513862 + AluJb SINE Alu 138 311 -1 1407 137 8 8 chr9 75758038 75758272 -66513172 - AluJb SINE Alu -4 308 75 307 270 98 136 chr9 75758713 75759242 -66512202 + L1M2 LINE L1 405 913 -5936 2046 142 3 0 chr9 75759911 75760222 -66511222 + AluSx SINE Alu 1 312 0 901 176 131 0 chr9 75760377 75760622 -66510822 + MER33 DNA MER1_type 44 320 -4 184 267 0 0 chr9 75760800 75760845 -66510599 - L3 LINE CR1 -1189 388 344 1158 146 214 0 chr9 75761393 75761613 -66509831 - AluJb SINE Alu -36 276 10 666 158 79 31 chr9 75762122 75762249 -66509195 - FLAM_C SINE Alu 0 133 1 259 278 0 72 chr9 75762402 75762499 -66508945 - MIR SINE MIR -170 92 3 298 151 38 0 chr9 75762704 75762757 -66508687 + MER3 DNA MER1_type 46 100 -109 390 227 21 92 chr9 75764233 75764374 -66507070 - MER5B DNA MER1_type -44 134 4 486 256 0 23 chr9 75764801 75764930 -66506514 + MIR SINE MIR 51 176 -86 314 262 28 37 chr9 75764896 75765003 -66506441 - MIR SINE MIR 0 262 157 * 447 152 0 0 chr9 75765089 75765155 -66506289 + Tigger5 DNA MER2_type 2248 2313 -10 352 216 54 0 chr9 75765158 75765232 -66506212 - Tigger5 DNA MER2_type -2244 79 2 1310 204 65 109 chr9 75765364 75766066 -66505378 - L1MD3 LINE L1 -79 7916 7072 593 200 36 36 chr9 75766070 75766235 -66505209 - MER69 DNA AcHobo -185 2341 2177 1733 191 0 0 chr9 75766235 75766533 -66504911 + AluSx SINE Alu 1 298 -14 790 117 39 23 chr9 75766572 75766700 -66504744 - L1PA12 LINE L1 -1 6167 6038 1074 144 29 0 chr9 75766701 75766874 -66504570 + L1PA13 LINE L1 5854 6031 -132 665 173 126 42 chr9 75766873 75766920 -66504524 - L1MC4a LINE L1 -724 7084 7042 * 3986 115 11 2 chr9 75766920 75767442 -66504002 - MER1A DNA MER1_type 0 527 1 665 173 126 42 chr9 75767442 75767608 -66503836 - L1MC4a LINE L1 -766 7042 6853 1801 230 31 67 chr9 75768107 75768235 -66503209 + MLT1E3 LTR MaLR 1 132 -492 2724 108 70 5 chr9 75768235 75768633 -66502811 + MSTA LTR MaLR 1 424 -4 1801 230 31 67 chr9 75768633 75769013 -66502431 + MLT1E3 LTR MaLR 132 491 -133 1298 195 58 8 chr9 75769072 75769333 -66502111 - AluJo SINE Alu -38 274 1 466 270 104 62 chr9 75769345 75769467 -66501977 + L1ME4a LINE L1 5616 5731 -390 1836 160 0 19 chr9 75769467 75769779 -66501665 + AluJo SINE Alu 1 306 -6 466 270 104 62 chr9 75769779 75769915 -66501529 + L1ME4a LINE L1 5731 5885 -236 2128 128 3 0 chr9 75769979 75770310 -66501134 + AluSx SINE Alu 1 332 0 264 298 43 68 chr9 75770416 75770577 -66500867 + L1MDa LINE L1 191 347 -6193 1231 269 63 47 chr9 75770787 75771408 -66500036 + L1MDa LINE L1 913 1543 -5000 1018 261 92 43 chr9 75771407 75771726 -66499718 + L1M4 LINE L1 3348 3693 -2453 * 2128 114 3 29 chr9 75771726 75772042 -66499402 + AluSg SINE Alu 1 308 -2 1018 261 92 43 chr9 75772042 75772136 -66499308 + L1M4 LINE L1 3693 3781 -2365 288 303 8 8 chr9 75772383 75772502 -66498942 + L1M4 LINE L1 3375 3493 -2653 25 0 0 0 chr9 75772641 75772666 -66498778 + AT_rich Low_complexity Low_complexity 1 25 0 489 224 107 66 chr9 75772688 75772884 -66498560 + MER112 DNA MER1_type 7 210 -50 1583 174 10 30 chr9 75773016 75773320 -66498124 - AluJo SINE Alu -10 302 5 2024 102 32 11 chr9 75773769 75774054 -66497390 - AluSx SINE Alu -21 291 1 23 0 0 0 chr9 75776680 75776703 -66494741 + AT_rich Low_complexity Low_complexity 1 23 0 6150 159 28 14 chr9 75776959 75777623 -66493821 - L1PA16 LINE L1 0 6166 5513 1908 122 20 27 chr9 75777623 75777635 -66493809 - AluSx SINE Alu -20 292 281 324 0 0 0 chr9 75777635 75777671 -66493773 + (TG)n Simple_repeat Simple_repeat 1 36 0 1908 122 20 27 chr9 75777671 75777952 -66493492 - AluSx SINE Alu -31 281 1 2318 75 7 10 chr9 75777953 75778248 -66493196 - AluSc SINE Alu -6 303 10 6150 159 28 14 chr9 75778248 75779694 -66491750 - L1PA16 LINE L1 -652 5514 4027 504 269 48 65 chr9 75779809 75780118 -66491326 - HAL1b LINE L1 -29 1319 1016 2324 104 3 19 chr9 75780174 75780490 -66490954 - AluSx SINE Alu -1 311 1 2468 76 0 0 chr9 75780541 75780842 -66490602 - AluSc SINE Alu -8 301 1 2457 268 102 28 chr9 75780895 75781202 -66490242 - HAL1 LINE L1 -128 2379 2096 2763 98 25 5 chr9 75781202 75781570 -66489874 - THE1C LTR MaLR 0 375 1 2457 268 102 28 chr9 75781570 75782425 -66489019 - HAL1 LINE L1 -411 2096 1131 22 0 0 0 chr9 75782434 75782456 -66488988 + AT_rich Low_complexity Low_complexity 1 22 0 1736 183 7 3 chr9 75782456 75782741 -66488703 - AluJo SINE Alu -20 292 7 4274 154 48 84 chr9 75782783 75783094 -66488350 + MER21A LTR ERV1 11 332 -599 2102 107 20 7 chr9 75783094 75783394 -66488050 - AluSq SINE Alu -9 304 1 4274 154 48 84 chr9 75783394 75783930 -66487514 + MER21A LTR ERV1 332 823 -108 288 0 0 0 chr9 75783930 75783962 -66487482 + (CTTG)n Simple_repeat Simple_repeat 4 35 0 4274 154 48 84 chr9 75783962 75784068 -66487376 + MER21A LTR ERV1 823 931 0 411 184 0 41 chr9 75784068 75784166 -66487278 - L1MA9 LINE L1 -295 6017 5924 714 187 15 15 chr9 75784167 75784301 -66487143 + AluJo SINE Alu 2 135 -177 1520 133 96 19 chr9 75784346 75784730 -66486714 - L1MA9 LINE L1 -752 5394 5141 1038 284 81 54 chr9 75784755 75784867 -66486577 - HAL1 LINE L1 -1596 911 803 1578 142 7 52 chr9 75784867 75785155 -66486289 + AluSx SINE Alu 38 312 0 1038 284 81 54 chr9 75785155 75785260 -66486184 - HAL1 LINE L1 -1704 803 702 2355 104 0 0 chr9 75785260 75785559 -66485885 - AluSq SINE Alu -14 299 1 1038 284 81 54 chr9 75785559 75785676 -66485768 - HAL1 LINE L1 -1805 702 590 2226 116 3 0 chr9 75785676 75785978 -66485466 + AluY SINE Alu 1 303 -8 1038 284 81 54 chr9 75785978 75786088 -66485356 - HAL1 LINE L1 -1917 590 453 974 259 58 63 chr9 75786092 75786505 -66484939 - L1ME3A LINE L1 -8 6162 5752 282 281 24 0 chr9 75786537 75786619 -66484825 - MIR SINE MIR -27 235 152 1234 263 72 55 chr9 75786633 75787310 -66484134 - L2 LINE L2 -6 3307 2618 242 208 156 26 chr9 75787304 75787381 -66484063 - MIR SINE MIR -107 155 69 * 282 253 179 105 chr9 75787369 75787531 -66483913 + MER5A DNA MER1_type 10 183 -6 1460 191 12 41 chr9 75787785 75788105 -66483339 - AluJb SINE Alu 0 312 2 2257 103 0 0 chr9 75788178 75788470 -66482974 + AluSx SINE Alu 5 296 -16 488 233 67 0 chr9 75790155 75790275 -66481169 + MIR SINE MIR 133 260 -2 24 0 0 0 chr9 75790762 75790786 -66480658 + AT_rich Low_complexity Low_complexity 1 24 0 2209 85 4 0 chr9 75791065 75791371 -66480073 + AluSq SINE Alu 1 307 0 2265 105 0 19 chr9 75791509 75791823 -66479621 - AluSx SINE Alu -4 308 1 1284 229 124 3 chr9 75791977 75792283 -66479161 - MER2 DNA MER2_type -1 343 1 199 167 0 0 chr9 75792290 75792326 -66479118 - L2 LINE L2 -15 3298 3263 288 0 0 0 chr9 75792361 75792393 -66479051 + (TG)n Simple_repeat Simple_repeat 1 32 0 14268 193 36 86 chr9 75792474 75792756 -66478688 - L1MA4 LINE L1 -6 7315 7021 2023 153 0 3 chr9 75792756 75793069 -66478375 - AluJb SINE Alu 0 312 1 14268 193 36 86 chr9 75793069 75793442 -66478002 - L1MA4 LINE L1 -300 7021 6631 2117 107 0 29 chr9 75793442 75793751 -66477693 - AluSx SINE Alu -12 300 1 14268 193 36 86 chr9 75793751 75794113 -66477331 - L1MA4 LINE L1 -690 6631 6253 1754 153 0 22 chr9 75794113 75794388 -66477056 - AluJo SINE Alu -31 281 13 14268 193 36 86 chr9 75794388 75795375 -66476069 - L1MA4 LINE L1 -1068 6253 5219 806 174 0 7 chr9 75795375 75795513 -66475931 - AluJo SINE Alu -175 137 1 14268 193 36 86 chr9 75795513 75796245 -66475199 - L1MA4 LINE L1 -2102 5219 4452 2294 78 0 3 chr9 75796245 75796539 -66474905 + AluY SINE Alu 2 294 -17 14268 193 36 86 chr9 75796539 75797069 -66474375 - L1MA4 LINE L1 -2869 4452 3897 2224 103 14 0 chr9 75797069 75797359 -66474085 - AluSp SINE Alu -17 296 3 14268 193 36 86 chr9 75797359 75797482 -66473962 - L1MA4 LINE L1 -3424 3897 3769 1541 216 3 10 chr9 75797482 75797783 -66473661 - AluJo SINE Alu -13 299 1 14268 193 36 86 chr9 75797783 75798569 -66472875 - L1MA4 LINE L1 -3552 3769 2946 815 176 0 0 chr9 75798569 75798688 -66472756 - FLAM_A SINE Alu -14 119 1 14268 193 36 86 chr9 75798688 75798755 -66472689 - L1MA4 LINE L1 -4375 2946 2877 1751 189 3 0 chr9 75798755 75799040 -66472404 - AluJb SINE Alu -26 286 1 14268 193 36 86 chr9 75799040 75799865 -66471579 - L1MA4 LINE L1 -4444 2877 2393 974 139 0 0 chr9 75799865 75799994 -66471450 - FLAM_C SINE Alu -2 131 3 14268 193 36 86 chr9 75799994 75800938 -66470506 - L1MA4 LINE L1 -4928 2393 1404 3843 210 35 0 chr9 75800961 75801666 -66469778 - L1MA4 LINE L1 -6426 742 13 1192 141 0 32 chr9 75801883 75802068 -66469376 - AluSg/x SINE Alu 0 310 132 2493 58 0 37 chr9 75802068 75802395 -66469049 - AluYb8 SINE Alu 0 318 4 1686 113 0 14 chr9 75803330 75803580 -66467864 - AluSx SINE Alu 0 310 64 430 113 97 0 chr9 75803603 75803665 -66467779 + AluS SINE Alu 3 70 -243 1542 104 50 14 chr9 75803818 75804040 -66467404 + MER30 DNA MER1_type 1 230 0 2237 200 63 38 chr9 75804054 75804080 -66467364 + L1 LINE L1 4389 4413 -1733 1907 112 90 0 chr9 75804080 75804348 -66467096 - AluSg SINE Alu -18 292 1 2237 200 63 38 chr9 75804348 75804951 -66466493 + L1 LINE L1 4413 5034 -1112 630 218 88 71 chr9 75804967 75805137 -66466307 - FAM SINE Alu -2 173 1 638 293 45 32 chr9 75805427 75805741 -66465703 + L1MC4a LINE L1 1207 1524 -4899 2258 114 16 3 chr9 75805859 75806167 -66465277 - AluSq SINE Alu -1 312 1 488 256 87 62 chr9 75806186 75806541 -66464903 + L1MC4a LINE L1 1807 2170 -4952 * 836 177 78 26 chr9 75806512 75806729 -66464715 + L1MB5 LINE L1 6736 6969 0 * 998 245 11 30 chr9 75806715 75806984 -66464460 + L1MC4a LINE L1 6103 6366 -2237 1270 194 141 96 chr9 75806998 75807130 -66464314 + MLT1E LTR MaLR 1 126 -467 1379 200 39 25 chr9 75807130 75807410 -66464034 - AluJo SINE Alu -28 284 1 1270 194 141 96 chr9 75807410 75807788 -66463656 + MLT1E LTR MaLR 126 534 -59 227 139 0 0 chr9 75807792 75807828 -66463616 + L1MC4a LINE L1 6416 6451 -2152 2106 129 20 0 chr9 75808029 75808323 -66463121 - AluSx SINE Alu -10 302 3 1594 50 0 25 chr9 75808478 75808676 -66462768 + AluY SINE Alu 105 297 -14 23 68 0 0 chr9 75809105 75809149 -66462295 + AT_rich Low_complexity Low_complexity 1 44 0 883 249 23 85 chr9 75809149 75809464 -66461980 + L1MC4a LINE L1 6444 6726 -1877 1490 145 128 57 chr9 75809464 75809746 -66461698 + AluJo SINE Alu 1 302 0 883 249 23 85 chr9 75809746 75809864 -66461580 + L1MC4a LINE L1 6726 6850 -1753 688 255 99 25 chr9 75809893 75810175 -66461269 + L1MC4a LINE L1 7077 7379 -1224 419 223 0 69 chr9 75810304 75810434 -66461010 + L1MC4 LINE L1 8713 8833 -4 867 131 51 0 chr9 75810437 75810574 -66460870 + AluSq SINE Alu 131 274 -39 37 23 0 0 chr9 75810574 75810618 -66460826 + AT_rich Low_complexity Low_complexity 1 44 0 1309 194 109 44 chr9 75810861 75811246 -66460198 + Charlie4a DNA MER1_type 20 441 -1520 1895 147 7 0 chr9 75811246 75811573 -66459871 + AluSx SINE Alu 1 312 0 1309 194 109 44 chr9 75811573 75811646 -66459798 + Charlie4a DNA MER1_type 441 508 0 1749 166 3 10 chr9 75813816 75814106 -66457338 - AluSq SINE Alu -25 288 1 477 301 75 49 chr9 75814147 75814413 -66457031 + L1ME LINE L1 5442 5714 -456 2065 105 3 20 chr9 75814430 75814735 -66456709 + AluSx SINE Alu 5 304 -8 389 272 42 66 chr9 75815029 75815242 -66456202 - L1ME3A LINE L1 -1 6169 5962 2160 125 0 3 chr9 75815366 75815677 -66455767 + AluSg SINE Alu 1 310 0 828 215 70 110 chr9 75815682 75816064 -66455380 - L1MC5 LINE L1 -437 7524 7128 2517 65 0 7 chr9 75816064 75816371 -66455073 - AluY SINE Alu -6 305 1 828 215 70 110 chr9 75816371 75816384 -66455060 - L1MC5 LINE L1 -833 7128 7116 630 42 0 0 chr9 75816384 75816456 -66454988 - tRNA-Asp-GAC tRNA tRNA -3 72 1 2254 93 0 63 chr9 75816463 75816795 -66454649 - AluY SINE Alu 0 311 1 828 215 70 110 chr9 75816795 75816846 -66454598 - L1MC5 LINE L1 -851 7110 7087 2247 117 0 0 chr9 75816859 75817159 -66454285 - AluY SINE Alu -11 300 1 1918 111 82 4 chr9 75817224 75817504 -66453940 - AluSg SINE Alu -8 302 1 2284 58 0 4 chr9 75817519 75817818 -66453626 - AluY SINE Alu 0 304 7 1038 191 6 0 chr9 75817883 75818056 -66453388 - FAM SINE Alu -1 174 1 1811 230 129 23 chr9 75818116 75818603 -66452841 + MLT1F LTR MaLR 1 539 -3 229 222 0 0 chr9 75818643 75818688 -66452756 - L1MC4 LINE L1 -1054 6988 6944 333 346 43 37 chr9 75819669 75820049 -66451395 + L1ME3A LINE L1 5548 5929 -233 2087 108 4 0 chr9 75820732 75821009 -66450435 + AluSx SINE Alu 1 278 -34 1894 212 93 47 chr9 75821111 75821648 -66449796 + MER4D LTR ERV1 342 903 0 2431 85 0 3 chr9 75821980 75822287 -66449157 - AluSc SINE Alu -3 306 1 270 381 24 8 chr9 75822577 75822703 -66448741 + MIR SINE MIR 26 153 -109 525 66 13 79 chr9 75822958 75823209 -66448235 + (TA)n Simple_repeat Simple_repeat 1 234 0 1615 180 0 26 chr9 75823378 75823683 -66447761 + AluJo SINE Alu 9 305 -7 272 104 0 21 chr9 75823716 75823764 -66447680 - L1MA7 LINE L1 -11 6280 6234 308 298 135 40 chr9 75823768 75823935 -66447509 - L1ME LINE L1 -321 5800 5600 2132 152 0 0 chr9 75823935 75824245 -66447199 - AluSx SINE Alu -2 310 1 308 298 135 40 chr9 75824245 75824329 -66447115 - L1ME LINE L1 -521 5600 5525 2287 93 19 22 chr9 75824574 75824885 -66446559 + AluSx SINE Alu 1 310 -2 604 221 55 33 chr9 75825427 75825608 -66445836 + MER58A DNA MER1_type 37 221 -3 313 269 21 32 chr9 75826037 75826130 -66445314 + MIR SINE MIR 50 141 -67 1279 156 84 0 chr9 75826494 75826732 -66444712 - Tigger2 DNA MER2_type 0 2718 2461 3914 127 106 1 chr9 75826809 75827478 -66443966 - Tigger2 DNA MER2_type -1979 739 1 905 211 5 11 chr9 75827504 75827694 -66443750 + MER3 DNA MER1_type 7 195 -14 231 329 53 0 chr9 75828605 75828681 -66442763 - L2 LINE L2 -50 3222 3143 203 147 0 0 chr9 75829812 75829846 -66441598 + (CCG)n Simple_repeat Simple_repeat 1 34 0 2183 77 32 0 chr9 75830596 75830881 -66440563 - AluSx SINE Alu -18 294 1 2341 75 20 0 chr9 75831046 75831351 -66440093 + AluY SINE Alu 1 311 0 1851 94 24 42 chr9 75831668 75831955 -66439489 - AluSx SINE Alu -30 282 1 285 320 154 6 chr9 75832509 75832684 -66438760 - MIR SINE MIR -5 257 57 1745 169 3 46 chr9 75832871 75833196 -66438248 - AluJo SINE Alu 0 312 2 280 225 191 0 chr9 75833220 75833309 -66438135 + MIR SINE MIR 152 257 -5 2111 155 58 29 chr9 75833577 75833631 -66437813 + L1MD2 LINE L1 5525 5576 -783 3090 164 21 13 chr9 75833631 75834099 -66437345 - MER70A LTR ERVL 0 472 1 2111 155 58 29 chr9 75834099 75834425 -66437019 + L1MD2 LINE L1 5576 5916 -443 1240 191 8 8 chr9 75834428 75834680 -66436764 - AluJo SINE Alu -1 311 60 1012 218 43 0 chr9 75834680 75834891 -66436553 + L1MD2 LINE L1 5911 6130 -229 32 0 0 0 chr9 75834938 75834970 -66436474 + AT_rich Low_complexity Low_complexity 1 32 0 345 282 35 0 chr9 75835359 75835444 -66436000 + L2 LINE L2 3138 3225 -47 251 290 0 0 chr9 75835665 75835727 -66435717 - MIR SINE MIR -155 107 46 348 64 0 0 chr9 75836847 75836894 -66434550 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1781 172 0 3 chr9 75836894 75837179 -66434265 - AluJb SINE Alu -28 284 1 416 224 231 8 chr9 75837642 75837776 -66433668 + MER5A DNA MER1_type 26 189 0 2408 65 10 10 chr9 75837840 75838146 -66433298 + AluY SINE Alu 1 306 -5 1299 170 159 15 chr9 75838150 75838420 -66433024 + AluJo SINE Alu 1 309 -3 617 284 17 81 chr9 75839180 75839203 -66432241 - MER58A DNA MER1_type -2196 224 201 3881 121 8 8 chr9 75839203 75839730 -66431714 + MER1A DNA MER1_type 1 527 0 617 284 17 81 chr9 75839730 75839869 -66431575 - MER58A DNA MER1_type -2219 201 79 1783 169 7 7 chr9 75839869 75840164 -66431280 - AluJb SINE Alu -17 295 1 617 284 17 81 chr9 75840164 75840236 -66431208 - MER58A DNA MER1_type -2341 79 4 1400 225 22 6 chr9 75841185 75841496 -66429948 + MER74A LTR ERVL 15 330 -228 396 167 0 0 chr9 75841525 75841597 -66429847 + C-rich Low_complexity Low_complexity 3 74 0 1252 183 12 8 chr9 75841597 75841837 -66429607 + MER74A LTR ERVL 318 558 0 410 222 141 52 chr9 75842316 75842451 -66428993 - MLT1K LTR MaLR -37 551 405 740 307 64 19 chr9 75842463 75842727 -66428717 - MLT1K LTR MaLR -304 284 9 1450 218 25 4 chr9 75843400 75843680 -66427764 + AluJo SINE Alu 1 313 0 244 0 0 0 chr9 75843680 75843707 -66427737 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2476 67 7 0 chr9 75843857 75844155 -66427289 - AluSp SINE Alu -13 300 1 2242 121 0 0 chr9 75844160 75844465 -66426979 - AluSx SINE Alu -7 305 1 351 0 0 0 chr9 75844537 75844576 -66426868 + (TG)n Simple_repeat Simple_repeat 2 40 0 1408 152 122 26 chr9 75844616 75844886 -66426558 - AluJb SINE Alu -16 296 1 2471 84 0 6 chr9 75844934 75845245 -66426199 + AluSc SINE Alu 1 309 0 1926 148 0 0 chr9 75845260 75845531 -66425913 + AluSx SINE Alu 1 271 -41 359 335 56 17 chr9 75846029 75846208 -66425236 - MIR SINE MIR 0 262 77 343 268 72 0 chr9 75846300 75846397 -66425047 - MLT1J LTR MaLR -407 104 1 228 122 0 0 chr9 75846650 75846691 -66424753 + (TC)n Simple_repeat Simple_repeat 1 41 0 1962 231 53 2 chr9 75846766 75847220 -66424224 - L1MD3 LINE L1 -19 7976 7500 452 352 37 40 chr9 75847232 75847530 -66423914 - L2 LINE L2 -575 2739 2443 1391 37 0 0 chr9 75847828 75847989 -66423455 + AluY SINE Alu 151 311 0 423 0 0 0 chr9 75847994 75848041 -66423403 + (TA)n Simple_repeat Simple_repeat 2 48 0 375 262 0 19 chr9 75848421 75848524 -66422920 - MER5B DNA MER1_type -1 177 77 1619 228 38 8 chr9 75848600 75848968 -66422476 - MLT1F LTR MaLR 0 542 164 22 0 0 0 chr9 75849145 75849167 -66422277 + AT_rich Low_complexity Low_complexity 1 22 0 327 267 154 34 chr9 75849411 75849630 -66421814 - MIR SINE MIR -16 246 8 2497 150 67 25 chr9 75849749 75849856 -66421588 - LTR47A LTR ERVL 0 452 351 2437 78 3 3 chr9 75849856 75850163 -66421281 + AluSq SINE Alu 1 307 -6 2497 150 67 25 chr9 75850163 75850489 -66420955 - LTR47A LTR ERVL -101 351 1 228 255 204 0 chr9 75850652 75850750 -66420694 + MIR SINE MIR 57 174 -88 2111 125 7 0 chr9 75851005 75851301 -66420143 + AluSq SINE Alu 1 298 -15 3128 109 47 5 chr9 75851593 75852023 -66419421 + MER83 LTR ERV1 1 448 0 664 181 105 0 chr9 75852085 75852218 -66419226 + MIR SINE MIR 2 148 -114 372 80 0 0 chr9 75852231 75852337 -66419107 - Alu SINE Alu 0 338 233 320 269 43 0 chr9 75852337 75852430 -66419014 + MIR SINE MIR 163 259 -3 2296 110 7 0 chr9 75852541 75852851 -66418593 + AluSx SINE Alu 1 312 0 384 286 16 16 chr9 75853337 75853463 -66417981 + MIR SINE MIR 1 126 -136 923 212 81 123 chr9 75853503 75853794 -66417650 - LTR37B LTR ERV1 0 468 203 1396 146 9 49 chr9 75853794 75854020 -66417424 + MER20 DNA MER1_type 1 217 -2 923 212 81 123 chr9 75854020 75854200 -66417244 - LTR37B LTR ERV1 -265 203 17 2147 125 3 10 chr9 75854203 75854514 -66416930 - AluSx SINE Alu -3 309 1 270 281 0 0 chr9 75854539 75854596 -66416848 + MIR SINE MIR 206 262 0 329 153 34 38 chr9 75855147 75855225 -66416219 - LTR41 LTR ERVL 0 795 707 2201 110 0 3 chr9 75855228 75855520 -66415924 + AluSx SINE Alu 1 291 -21 1394 225 278 8 chr9 75855529 75856000 -66415444 - LTR41 LTR ERVL -175 598 1 1055 201 0 5 chr9 75856127 75856311 -66415133 + MER5A DNA MER1_type 7 189 0 1767 163 20 10 chr9 75856391 75856692 -66414752 - AluJo SINE Alu 0 312 9 863 167 0 0 chr9 75856709 75856841 -66414603 - AluJb SINE Alu -6 306 175 359 158 18 0 chr9 75857123 75857180 -66414264 - MLT1G LTR MaLR -414 176 119 2112 127 7 0 chr9 75857184 75857483 -66413961 - AluSx SINE Alu -11 301 1 3967 105 0 4 chr9 75857777 75858290 -66413154 + MER9 LTR ERVK 1 511 0 283 186 57 43 chr9 75859249 75859319 -66412125 + MLT1J2 LTR MaLR 69 139 -311 1806 124 56 0 chr9 75859672 75859939 -66411505 + AluSc SINE Alu 1 282 -27 13168 59 1 1 chr9 75859939 75862285 -66409159 + L1PA6 LINE L1 3799 6149 -5 342 0 0 0 chr9 75862580 75862618 -66408826 + (CA)n Simple_repeat Simple_repeat 2 39 0 210 174 0 0 chr9 75862857 75862903 -66408541 + (CA)n Simple_repeat Simple_repeat 1 46 0 230 328 0 0 chr9 75862917 75862984 -66408460 - MER112 DNA MER1_type -193 67 1 312 269 52 67 chr9 75863725 75863993 -66407451 + L1ME LINE L1 5520 5783 -338 273 238 123 103 chr9 75864036 75864288 -66407156 - Charlie8 DNA MER1_type -162 2255 1999 1953 134 11 0 chr9 75864469 75864745 -66406699 + AluSx SINE Alu 1 279 -33 2352 89 20 7 chr9 75864748 75865052 -66406392 + AluY SINE Alu 1 308 -3 190 50 50 25 chr9 75865065 75865105 -66406339 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 1486 181 9 69 chr9 75866719 75866886 -66404558 - AluJo SINE Alu -11 301 160 2090 113 3 13 chr9 75866886 75867186 -66404258 - AluSc SINE Alu -10 299 3 1486 181 9 69 chr9 75867186 75867338 -66404106 - AluJo SINE Alu -152 160 1 478 198 31 10 chr9 75867387 75867483 -66403961 + MLT1K LTR MaLR 145 242 -346 366 208 40 20 chr9 75867522 75867623 -66403821 - L1MC5 LINE L1 -38 7923 7821 322 260 153 56 chr9 75867628 75867781 -66403663 + MLT1K LTR MaLR 279 456 -132 846 102 87 0 chr9 75867781 75867908 -66403536 + MER85 DNA T2_type 1 138 -1 322 260 153 56 chr9 75867908 75867950 -66403494 + MLT1K LTR MaLR 456 493 -95 214 71 24 24 chr9 75868811 75868853 -66402591 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 227 304 0 29 chr9 75868916 75868985 -66402459 - MER5B DNA MER1_type -1 177 111 202 233 14 41 chr9 75868939 75869012 -66402432 + MER5A DNA MER1_type 36 106 -83 * 279 54 0 0 chr9 75869037 75869074 -66402370 + (TG)n Simple_repeat Simple_repeat 2 38 0 269 271 113 46 chr9 75869117 75869268 -66402176 - L2 LINE L2 -250 3022 2862 314 338 90 64 chr9 75869933 75870529 -66400915 + L2 LINE L2 2660 3270 -2 354 294 67 0 chr9 75871949 75872068 -66399376 - L1MC5 LINE L1 -35 7926 7800 580 181 11 0 chr9 75872331 75872425 -66399019 + MER5A DNA MER1_type 7 101 -88 626 294 14 18 chr9 75872443 75872725 -66398719 - L1MDa LINE L1 -2626 3914 3634 * 2803 244 211 30 chr9 75872720 75874119 -66397325 - L1MDa LINE L1 -4880 1660 9 328 204 78 0 chr9 75874107 75874210 -66397234 - L1MEc LINE L1 -3171 3044 2934 * 609 258 6 22 chr9 75874211 75874389 -66397055 + L1MC5 LINE L1 7739 7913 -48 1089 258 85 57 chr9 75874416 75874714 -66396730 - L1MEc LINE L1 -3267 2948 2660 2463 155 81 0 chr9 75874714 75875146 -66396298 + MLT1C LTR MaLR 1 467 0 1089 258 85 57 chr9 75875146 75875177 -66396267 - L1MEc LINE L1 -3555 2660 2631 2016 149 3 0 chr9 75875177 75875486 -66395958 + AluSx SINE Alu 1 310 -2 1089 258 85 57 chr9 75875486 75875767 -66395677 - L1MEc LINE L1 -3584 2631 2320 1128 156 0 0 chr9 75875774 75875941 -66395503 - AluSg/x SINE Alu -9 303 137 337 194 94 69 chr9 75875993 75876108 -66395336 - L1MEc LINE L1 -4088 2308 2186 1904 151 10 3 chr9 75876108 75876407 -66395037 - AluJb SINE Alu -11 301 1 337 194 94 69 chr9 75876407 75876451 -66394993 - L1MEc LINE L1 -4210 2186 2145 440 291 113 59 chr9 75876584 75876978 -66394466 - L1MC/D LINE L1 -462 5659 5255 3280 140 6 6 chr9 75877661 75878175 -66393269 + L1MA4 LINE L1 5508 6021 -279 330 188 38 0 chr9 75878183 75878263 -66393181 + L1MB3 LINE L1 6099 6181 -2 22 35 0 0 chr9 75878294 75878323 -66393121 + AT_rich Low_complexity Low_complexity 1 29 0 1715 169 3 14 chr9 75878323 75878613 -66392831 - AluJb SINE Alu -25 287 1 2043 118 24 0 chr9 75879359 75879648 -66391796 - AluSx SINE Alu -16 296 1 1843 214 67 19 chr9 75880282 75880745 -66390699 + Charlie4a DNA MER1_type 8 492 -16 212 200 73 0 chr9 75881852 75881907 -66389537 - MIR SINE MIR -98 164 106 2453 139 24 33 chr9 75882042 75882089 -66389355 + MSTB LTR MaLR 8 54 -372 2276 94 14 0 chr9 75882089 75882377 -66389067 + AluSx SINE Alu 1 292 -20 2453 139 24 33 chr9 75882377 75882752 -66388692 + MSTB LTR MaLR 54 426 0 885 177 0 0 chr9 75883030 75883160 -66388284 + FLAM_C SINE Alu 1 130 -3 353 314 169 30 chr9 75883394 75883766 -66387678 + MLT1K LTR MaLR 109 532 -56 1088 158 123 8 chr9 75885458 75885718 -66385726 - MER58D DNA MER1_type -8 378 89 1772 174 0 3 chr9 75886226 75886525 -66384919 + AluJb SINE Alu 1 298 -14 458 280 28 21 chr9 75886912 75887075 -66384369 - MIR3 SINE MIR -8 200 37 243 0 0 0 chr9 75887446 75887473 -66383971 + (T)n Simple_repeat Simple_repeat 1 27 0 517 206 0 0 chr9 75887812 75887909 -66383535 + AluJ/FRAM SINE Alu 215 311 -1 2225 82 0 4 chr9 75888628 75888908 -66382536 - AluSc SINE Alu -14 295 17 1284 182 94 21 chr9 75889104 75889390 -66382054 - MER58B DNA MER1_type 0 341 35 225 0 0 0 chr9 75889936 75889961 -66381483 + (CGGGG)n Simple_repeat Simple_repeat 5 29 0 23 0 0 0 chr9 75890207 75890230 -66381214 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 75890649 75890674 -66380770 + AT_rich Low_complexity Low_complexity 1 25 0 324 0 0 0 chr9 75892014 75892050 -66379394 + (TG)n Simple_repeat Simple_repeat 2 37 0 189 74 0 0 chr9 75892201 75892228 -66379216 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 834 153 15 0 chr9 75892410 75892541 -66378903 + FLAM_C SINE Alu 1 133 -10 806 209 15 127 chr9 75892577 75892801 -66378643 - MIR SINE MIR -23 239 48 1910 67 56 26 chr9 75892801 75893070 -66378374 - AluSg1 SINE Alu -8 301 25 806 209 15 127 chr9 75893070 75893113 -66378331 - MIR SINE MIR -214 48 2 300 298 108 63 chr9 75894059 75894217 -66377227 - L2 LINE L2 0 3272 3108 28 86 0 0 chr9 75894281 75894351 -66377093 + AT_rich Low_complexity Low_complexity 1 70 0 665 228 0 22 chr9 75894744 75894916 -66376528 - FLAM_A SINE Alu 0 169 1 435 345 57 26 chr9 75895606 75895835 -66375609 - MIR SINE MIR -3 259 24 1781 148 57 7 chr9 75896481 75896764 -66374680 + AluJb SINE Alu 1 297 -15 832 291 107 3 chr9 75896777 75897076 -66374368 - L1MC4a LINE L1 -1962 5846 5517 199 360 9 35 chr9 75897155 75897269 -66374175 - L2 LINE L2 -209 3063 2953 2477 44 0 3 chr9 75897616 75897909 -66373535 - AluY SINE Alu -17 294 3 583 116 105 0 chr9 75899127 75899222 -66372222 + MER4D LTR ERV1 1 105 -798 218 328 15 0 chr9 75899505 75899572 -66371872 + MIR SINE MIR 57 124 -84 1138 178 18 22 chr9 75899572 75899797 -66371647 - AluJb SINE Alu -8 304 81 2110 117 0 10 chr9 75900641 75900941 -66370503 - AluSq SINE Alu 0 313 17 1283 150 54 86 chr9 75900984 75901264 -66370180 - AluJo SINE Alu -15 297 27 2190 112 0 3 chr9 75901265 75901561 -66369883 + AluSx SINE Alu 1 295 -17 2294 94 3 3 chr9 75902167 75902466 -66368978 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr9 75903672 75903697 -66367747 + AT_rich Low_complexity Low_complexity 1 25 0 1534 162 24 44 chr9 75903697 75903994 -66367450 - AluJo SINE Alu -21 291 1 642 254 99 9 chr9 75904066 75904298 -66367146 - MER112 DNA MER1_type -2 254 2 1402 206 34 20 chr9 75904738 75905030 -66366414 + AluJo SINE Alu 15 310 -2 631 192 123 7 chr9 75905080 75905226 -66366218 - L1ME4a LINE L1 -3 6118 5956 1408 183 8 12 chr9 75905394 75905640 -66365804 - AluJo SINE Alu -53 259 15 1620 162 3 55 chr9 75905666 75905975 -66365469 + AluJb SINE Alu 1 293 -19 1616 153 36 27 chr9 75905982 75906283 -66365161 + AluJo SINE Alu 1 304 -8 201 328 16 0 chr9 75906423 75906484 -66364960 - MIR SINE MIR 0 262 201 919 289 16 4 chr9 75906531 75906777 -66364667 + MIR SINE MIR 8 256 -6 1432 179 49 11 chr9 75907008 75907293 -66364151 - MER58B DNA MER1_type -1 340 45 2374 109 0 0 chr9 75908082 75908385 -66363059 + AluSq SINE Alu 1 303 -10 2417 97 0 0 chr9 75908394 75908702 -66362742 + AluSc SINE Alu 2 309 0 274 261 0 54 chr9 75909346 75909438 -66362006 + MER112 DNA MER1_type 1 87 -173 1828 149 48 14 chr9 75909674 75910000 -66361444 + AluJb SINE Alu 1 312 0 21 0 0 0 chr9 75910217 75910238 -66361206 + AT_rich Low_complexity Low_complexity 1 21 0 1954 122 34 0 chr9 75910736 75911031 -66360413 - AluSx SINE Alu -7 305 1 535 255 6 38 chr9 75911507 75911609 -66359835 - L1ME LINE L1 -582 5588 5491 3496 119 10 55 chr9 75911609 75912205 -66359239 - L1MC1 LINE L1 0 6333 5765 535 255 6 38 chr9 75912205 75912259 -66359185 - L1ME LINE L1 -679 5491 5437 1908 151 3 29 chr9 75912427 75912738 -66358706 - AluJo SINE Alu -9 303 1 186 212 30 0 chr9 75913422 75913455 -66357989 - L2 LINE L2 -179 3093 3060 2150 115 23 3 chr9 75913531 75913835 -66357609 - AluSg SINE Alu 0 310 1 1422 163 0 0 chr9 75915157 75915384 -66356060 - AluSg/x SINE Alu -1 311 85 3425 128 50 5 chr9 75915391 75915873 -66355571 - L1MA8 LINE L1 -2 6289 5777 204 40 0 0 chr9 75915873 75915898 -66355546 + (TG)n Simple_repeat Simple_repeat 2 26 0 3425 128 50 5 chr9 75915898 75915977 -66355467 - L1MA8 LINE L1 -514 5777 5703 301 219 73 0 chr9 75916094 75916176 -66355268 - Charlie5 DNA MER1_type -2500 112 25 24 0 0 0 chr9 75916250 75916274 -66355170 + AT_rich Low_complexity Low_complexity 1 24 0 2101 134 0 3 chr9 75916274 75916573 -66354871 - AluSx SINE Alu -14 298 1 407 237 17 34 chr9 75916619 75916737 -66354707 - L2 LINE L2 -1 3312 3197 23 0 0 0 chr9 75917002 75917025 -66354419 + AT_rich Low_complexity Low_complexity 1 23 0 1786 129 8 0 chr9 75917025 75917273 -66354171 - AluSx SINE Alu -26 286 37 216 86 0 0 chr9 75917357 75917392 -66354052 + (T)n Simple_repeat Simple_repeat 1 35 0 1259 214 59 42 chr9 75917446 75917544 -66353900 - MER2 DNA MER2_type 0 344 249 2000 138 0 0 chr9 75917544 75917826 -66353618 + AluSx SINE Alu 4 285 -27 1259 214 59 42 chr9 75917826 75918064 -66353380 - MER2 DNA MER2_type -95 249 2 312 205 229 0 chr9 75918066 75918149 -66353295 - L2 LINE L2 -4 3309 3208 217 234 0 0 chr9 75918322 75918369 -66353075 + T-rich Low_complexity Low_complexity 2 48 0 2200 111 31 0 chr9 75918789 75919114 -66352330 - L1MA5A LINE L1 0 6297 5963 850 261 87 32 chr9 75919727 75920228 -66351216 - L2 LINE L2 -20 3293 2721 1929 134 116 30 chr9 75920304 75920639 -66350805 - THE1B LTR MaLR 0 364 1 263 229 156 0 chr9 75920826 75920922 -66350522 + MIR SINE MIR 38 148 -114 1916 169 25 25 chr9 75921169 75921405 -66350039 - MLT1B LTR MaLR -4 386 148 2307 96 3 0 chr9 75921405 75921698 -66349746 + AluSc SINE Alu 2 295 -14 1916 169 25 25 chr9 75921698 75921795 -66349649 - MLT1B LTR MaLR -241 149 53 396 186 81 12 chr9 75921795 75921881 -66349563 - Tigger5 DNA MER2_type 0 2323 2232 280 182 18 18 chr9 75921886 75921941 -66349503 - Tigger5 DNA MER2_type -2268 55 1 248 136 15 106 chr9 75921941 75922006 -66349438 - MLT1B LTR MaLR -331 59 1 681 175 83 39 chr9 75922728 75922934 -66348510 + MIR SINE MIR 3 212 -50 26 64 0 0 chr9 75923132 75923179 -66348265 + AT_rich Low_complexity Low_complexity 1 47 0 252 280 133 27 chr9 75923992 75924152 -66347292 + MIR SINE MIR 17 192 -70 660 243 145 14 chr9 75924338 75924552 -66346892 + MIR SINE MIR 12 253 -9 2418 55 6 10 chr9 75924859 75925170 -66346274 + AluY SINE Alu 1 310 -1 913 140 48 81 chr9 75925802 75925857 -66345587 - L1MB5 LINE L1 0 6174 6119 2866 97 33 12 chr9 75925857 75926282 -66345162 - L1MA2 LINE L1 0 6304 5871 913 140 48 81 chr9 75926282 75926412 -66345032 - L1MB5 LINE L1 -55 6119 5995 28 29 0 0 chr9 75927606 75927641 -66343803 + AT_rich Low_complexity Low_complexity 1 35 0 2008 133 0 17 chr9 75927641 75927934 -66343510 - AluSx SINE Alu -24 288 1 2285 108 0 0 chr9 75928303 75928610 -66342834 - AluSg1 SINE Alu -2 307 1 765 285 101 59 chr9 75929418 75930061 -66341383 + L1MC4a LINE L1 5665 6334 -1474 338 290 11 11 chr9 75930079 75930172 -66341272 - L1MC4 LINE L1 -1337 6705 6613 642 141 35 0 chr9 75930176 75930346 -66341098 + (TA)n Simple_repeat Simple_repeat 2 177 0 4371 220 70 48 chr9 75930420 75931883 -66339561 + L1MC5 LINE L1 6413 7915 -46 684 221 133 7 chr9 75933556 75933770 -66337674 - L1ME3 LINE L1 -1 6161 5926 856 207 66 38 chr9 75934099 75934312 -66337132 + MER20 DNA MER1_type 1 219 0 462 36 0 0 chr9 75934676 75934732 -66336712 + (CA)n Simple_repeat Simple_repeat 2 57 0 1209 267 242 32 chr9 75936195 75937291 -66334153 - HAL1 LINE L1 -3 2504 1179 1702 205 158 22 chr9 75937346 75937877 -66333567 - MLT1E1 LTR MaLR 0 654 10 916 249 88 90 chr9 75937886 75938118 -66333326 - HAL1 LINE L1 -1449 1058 827 2147 106 3 7 chr9 75938118 75938411 -66333033 - AluSx SINE Alu -20 292 1 916 249 88 90 chr9 75938411 75939148 -66332296 - HAL1 LINE L1 -1680 827 91 1514 153 77 0 chr9 75940145 75940432 -66331012 + MER33 DNA MER1_type 7 315 -9 1796 160 47 7 chr9 75940754 75941054 -66330390 - AluSx SINE Alu 0 312 1 2095 129 26 0 chr9 75941140 75941442 -66330002 - AluSx SINE Alu -2 310 1 472 113 0 0 chr9 75941471 75941542 -66329902 + L1 LINE L1 3287 3357 -2789 * 535 258 115 18 chr9 75941538 75941755 -66329689 + L1ME LINE L1 5566 5803 -318 2037 124 10 16 chr9 75942736 75943050 -66328394 + AluJb SINE Alu 1 312 0 21 36 0 0 chr9 75943302 75943330 -66328114 + AT_rich Low_complexity Low_complexity 1 28 0 1733 170 10 10 chr9 75943479 75943767 -66327677 - AluJo SINE Alu -24 288 1 1943 110 0 4 chr9 75944662 75944925 -66326519 - AluSx SINE Alu -15 297 36 948 204 165 4 chr9 75945066 75945371 -66326073 - L1ME2 LINE L1 -1 6163 5808 1651 184 18 4 chr9 75945993 75946265 -66325179 + AluJo SINE Alu 1 276 -36 953 177 42 88 chr9 75946427 75946812 -66324632 - L1MC5 LINE L1 -284 7677 7311 464 164 0 45 chr9 75946847 75946981 -66324463 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 240 35 0 0 chr9 75947040 75947069 -66324375 + (CCTA)n Simple_repeat Simple_repeat 1 29 0 1284 224 65 48 chr9 75947165 75947704 -66323740 - L1MC5 LINE L1 -726 7235 6688 198 0 0 0 chr9 75948753 75948775 -66322669 + (T)n Simple_repeat Simple_repeat 1 22 0 34 0 0 0 chr9 75948993 75949027 -66322417 + AT_rich Low_complexity Low_complexity 1 34 0 2329 86 0 40 chr9 75950856 75951181 -66320263 + AluSx SINE Alu 1 312 0 340 303 62 39 chr9 75951690 75951868 -66319576 - MIR SINE MIR 0 262 81 529 303 105 26 chr9 75952662 75952890 -66318554 + MIR SINE MIR 13 258 -4 2373 109 3 0 chr9 75953082 75953393 -66318051 - AluSx SINE Alu 0 312 1 2397 90 3 0 chr9 75955185 75955497 -66315947 + AluSp SINE Alu 1 313 0 272 27 27 0 chr9 75956428 75956465 -66314979 + (ATTG)n Simple_repeat Simple_repeat 4 41 0 1920 116 0 44 chr9 75956465 75956758 -66314686 - AluSx SINE Alu -32 280 1 573 182 0 0 chr9 75956834 75956944 -66314500 - L1MB7 LINE L1 -15 6169 6060 253 181 96 11 chr9 75956956 75957050 -66314394 - L1MB2 LINE L1 -2 6169 6068 1352 142 21 8 chr9 75957193 75957432 -66314012 - MER4D LTR ERV1 0 903 662 2247 152 50 33 chr9 75957573 75957900 -66313544 + MSTC LTR MaLR 1 338 -90 2268 109 0 3 chr9 75957900 75958203 -66313241 - AluSq SINE Alu -11 302 1 2247 152 50 33 chr9 75958203 75958296 -66313148 + MSTC LTR MaLR 338 428 0 239 274 192 0 chr9 75958551 75958624 -66312820 + L2 LINE L2 3203 3289 -24 1479 199 93 18 chr9 75958681 75959078 -66312366 - L1ME1 LINE L1 -62 6104 5678 22 0 0 0 chr9 75959212 75959234 -66312210 + AT_rich Low_complexity Low_complexity 1 22 0 311 322 51 15 chr9 75959735 75959905 -66311539 + MIR SINE MIR 43 222 -40 2302 95 7 7 chr9 75959905 75960211 -66311233 + AluSx SINE Alu 1 306 -6 311 322 51 15 chr9 75960211 75960244 -66311200 + MIR SINE MIR 222 252 -10 332 314 23 0 chr9 75960245 75960331 -66311113 + MIR3 SINE MIR 99 186 -22 24 32 0 0 chr9 75960466 75960497 -66310947 + AT_rich Low_complexity Low_complexity 1 31 0 329 322 0 35 chr9 75960859 75960974 -66310470 + L3 LINE CR1 177 287 -1290 225 233 262 10 chr9 75960980 75961083 -66310361 - L1MC4 LINE L1 -220 7822 7694 2284 104 0 0 chr9 75961088 75961386 -66310058 - AluSx SINE Alu -14 298 1 1739 167 24 0 chr9 75961457 75961745 -66309699 - AluJb SINE Alu -17 295 1 1846 140 11 11 chr9 75961921 75962207 -66309237 + AluJb SINE Alu 10 295 -17 642 313 81 14 chr9 75962207 75962578 -66308866 - L1MC4a LINE L1 -1946 5862 5467 313 338 179 54 chr9 75962792 75963183 -66308261 + L2 LINE L2 2829 3268 -4 3729 198 35 25 chr9 75963288 75963607 -66307837 - L1MB4 LINE L1 -68 6610 6296 2118 99 0 14 chr9 75963607 75963901 -66307543 - AluSx SINE Alu 0 312 23 3729 198 35 25 chr9 75963901 75964110 -66307334 - L1MB4 LINE L1 -382 6296 6091 2403 50 3 3 chr9 75964110 75964408 -66307036 - AluY SINE Alu -13 298 1 3729 198 35 25 chr9 75964408 75965481 -66305963 - L1MB4 LINE L1 -587 6091 4999 2304 121 186 29 chr9 75965531 75966043 -66305401 + LTR14B LTR ERVK 17 608 0 4990 208 77 49 chr9 75966055 75969067 -66302377 - L1MB4 LINE L1 -2492 4152 1054 651 241 96 101 chr9 75969079 75969457 -66301987 - L1MB4 LINE L1 -5584 958 609 260 269 46 9 chr9 75969833 75969941 -66301503 - L1MB4 LINE L1 -6429 113 2 292 265 68 41 chr9 75970131 75970278 -66301166 - L2 LINE L2 0 3313 3163 740 197 0 8 chr9 75970391 75970523 -66300921 + FLAM_A SINE Alu 2 132 -1 2233 108 23 98 chr9 75971342 75971666 -66299778 + LTR23 LTR ERV1 1 282 -155 2152 117 0 0 chr9 75971666 75971980 -66299464 + AluSc SINE Alu 1 314 0 2233 108 23 98 chr9 75971980 75972126 -66299318 + LTR23 LTR ERV1 282 437 0 325 312 203 35 chr9 75972288 75972529 -66298915 - L2 LINE L2 0 3313 3114 4535 137 8 27 chr9 75972529 75973047 -66298397 + MER72 LTR ERV1 1 502 -220 2228 110 0 10 chr9 75973047 75973347 -66298097 - AluSx SINE Alu -13 299 3 4535 137 8 27 chr9 75973347 75973564 -66297880 + MER72 LTR ERV1 502 722 0 325 312 203 35 chr9 75973564 75973755 -66297689 - L2 LINE L2 -199 3114 2808 984 171 60 67 chr9 75973767 75974036 -66297408 + MER5C DNA MER1_type 58 324 0 293 355 8 8 chr9 75974037 75974161 -66297283 - L2 LINE L2 -505 2809 2686 1017 284 80 86 chr9 75974427 75975150 -66296294 - L2 LINE L2 -604 2710 1991 2302 129 0 0 chr9 75975150 75975459 -66295985 + AluSx SINE Alu 1 309 -3 1017 284 80 86 chr9 75975459 75975560 -66295884 - L2 LINE L2 -1323 1991 1891 590 309 77 43 chr9 75976148 75976475 -66294969 - L3 LINE CR1 -27 1550 1213 901 263 138 34 chr9 75977062 75977561 -66293883 + MLT1H1 LTR MaLR 2 552 -3 502 270 85 11 chr9 75977563 75977752 -66293692 - MIR SINE MIR -59 203 1 373 217 42 42 chr9 75978329 75978472 -66292972 + MER90 LTR ERV1 460 602 -12 2189 107 10 3 chr9 75978535 75978835 -66292609 - AluSx SINE Alu -10 302 1 1691 157 20 73 chr9 75978924 75979320 -66292124 - MLT1B LTR MaLR -8 382 8 588 303 171 43 chr9 75979620 75979864 -66291580 + L2 LINE L2 2141 2352 -962 3956 59 10 2 chr9 75979864 75980373 -66291071 - LTR10D LTR ERV1 0 513 1 588 303 171 43 chr9 75980373 75980864 -66290580 + L2 LINE L2 2352 2970 -344 346 365 14 14 chr9 75981002 75981150 -66290294 + MIR SINE MIR 6 153 -109 1054 153 74 0 chr9 75981184 75981387 -66290057 - MSTB LTR MaLR 0 426 209 595 128 86 0 chr9 75981389 75981506 -66289938 + L1PBa LINE L1 2190 2316 -4547 481 261 54 23 chr9 75981610 75981969 -66289475 - L1ME LINE L1 -561 5629 5245 498 225 78 94 chr9 75982064 75982308 -66289136 - L1ME LINE L1 -1620 4595 4356 272 276 110 33 chr9 75982311 75982371 -66289073 - L1ME LINE L1 -2770 3445 3391 2229 86 22 32 chr9 75982371 75982686 -66288758 + AluSx SINE Alu 1 312 0 272 276 110 33 chr9 75982686 75983078 -66288366 - L1ME LINE L1 -2824 3391 2958 302 165 0 76 chr9 75983130 75983209 -66288235 + MLT1E2 LTR MaLR 2 74 -552 32 0 0 0 chr9 75983209 75983241 -66288203 + AT_rich Low_complexity Low_complexity 1 32 0 730 82 0 0 chr9 75983241 75983338 -66288106 - HY3 scRNA scRNA -1 100 4 2093 186 48 49 chr9 75983338 75983907 -66287537 + MLT1E2 LTR MaLR 59 626 0 550 302 43 30 chr9 75984130 75984498 -66286946 - L1ME LINE L1 -3573 2642 2270 300 333 63 6 chr9 75984515 75984689 -66286755 - L1ME LINE L1 -4086 2310 2127 1826 112 2 137 chr9 75985016 75985426 -66286018 - THE1A LTR MaLR 0 355 1 180 111 0 0 chr9 75985729 75985756 -66285688 + (TATG)n Simple_repeat Simple_repeat 3 29 0 2053 134 3 3 chr9 75985756 75986054 -66285390 - AluSx SINE Alu -14 298 1 2671 113 34 5 chr9 75986163 75986579 -66284865 - MSTA LTR MaLR 0 428 1 296 301 0 0 chr9 75986608 75986701 -66284743 - HAL1 LINE L1 -863 1644 1552 2104 155 21 13 chr9 75987351 75987738 -66283706 - MLT1B LTR MaLR 0 390 1 26 0 0 0 chr9 75988108 75988134 -66283310 + AT_rich Low_complexity Low_complexity 1 26 0 208 209 0 66 chr9 75988936 75989027 -66282417 + A-rich Low_complexity Low_complexity 2 86 0 719 198 156 67 chr9 75989122 75989480 -66281964 + MLT1C LTR MaLR 1 390 -77 515 139 0 0 chr9 75989481 75989553 -66281891 - MER5A DNA MER1_type -116 73 2 3867 92 18 2 chr9 75989558 75990103 -66281341 - MER41A LTR ERV1 0 554 1 425 234 188 16 chr9 75990114 75990242 -66281202 - MER5B DNA MER1_type -3 175 26 1803 272 86 47 chr9 75990867 75991672 -66279772 - HAL1 LINE L1 -180 2327 1442 2367 83 3 7 chr9 75991672 75991973 -66279471 + AluSp SINE Alu 1 300 -13 1803 272 86 47 chr9 75991973 75992570 -66278874 - HAL1 LINE L1 -1065 1442 870 360 271 62 40 chr9 75992570 75992747 -66278697 + LTR50 LTR ERVL 1 181 -614 1546 150 26 0 chr9 75993614 75993934 -66277510 + L1MA2 LINE L1 5285 5668 -634 2359 99 48 23 chr9 75993935 75994288 -66277156 + THE1B LTR MaLR 3 364 0 11682 97 8 0 chr9 75994288 75995855 -66275589 + THE1B-int LTR MaLR 1 1580 0 2194 107 56 34 chr9 75995855 75996211 -66275233 + THE1B LTR MaLR 1 364 0 3738 107 59 2 chr9 75996211 75996807 -66274637 + L1MA2 LINE L1 5675 6304 0 1031 236 60 50 chr9 75997192 75997574 -66273870 - LTR16C LTR ERVL -2 489 104 180 0 0 0 chr9 75997690 75997710 -66273734 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 389 306 29 35 chr9 75997734 75997907 -66273537 - L2 LINE L2 -36 3277 3106 259 294 134 16 chr9 75999013 75999136 -66272308 + MIR SINE MIR 20 153 -66 372 244 12 0 chr9 75999461 75999543 -66271901 + MLT1F LTR MaLR 1 83 -459 3442 135 45 11 chr9 75999545 76000188 -66271256 + L1PA13 LINE L1 1568 2232 -4555 2343 277 36 36 chr9 76000337 76001227 -66270217 - L1PA12 LINE L1 -5079 1919 2 * 4401 221 27 91 chr9 76001224 76001608 -66269836 - L1PA12 LINE L1 -2749 4835 4428 1548 130 38 8 chr9 76001608 76001869 -66269575 - L1PA11 LINE L1 0 6174 5906 4401 221 27 91 chr9 76001869 76003108 -66268336 - L1PA12 LINE L1 -3156 4428 3112 1786 46 0 30 chr9 76003108 76003345 -66268099 - L1PA5 LINE L1 -2 6152 5923 4401 221 27 91 chr9 76003345 76004585 -66266859 - L1PA12 LINE L1 -4472 3112 2209 6614 118 26 19 chr9 76004585 76005648 -66265796 - MER11C LTR ERVK 0 1071 1 4401 221 27 91 chr9 76005648 76005675 -66265769 - L1PA12 LINE L1 -5375 2209 2182 2314 97 3 10 chr9 76005770 76006069 -66265375 - AluSp SINE Alu -16 297 1 22 0 0 0 chr9 76006290 76006312 -66265132 + AT_rich Low_complexity Low_complexity 1 22 0 1954 176 35 0 chr9 76006313 76006683 -66264761 - L1MB2 LINE L1 -6 6976 6594 462 232 0 0 chr9 76006698 76006810 -66264634 + (TA)n Simple_repeat Simple_repeat 1 112 0 4623 208 44 44 chr9 76006817 76008265 -66263179 - L1MB2 LINE L1 -391 6591 5159 2065 93 0 0 chr9 76008265 76008524 -66262920 - AluY SINE Alu -13 298 40 4623 208 44 44 chr9 76008524 76008929 -66262515 - L1MB2 LINE L1 -1823 5159 4755 2153 225 123 24 chr9 76008940 76009784 -66261660 - L1MB2 LINE L1 -5087 1768 850 752 197 51 22 chr9 76009795 76009973 -66261471 - L1MB2 LINE L1 -6052 807 625 * 1061 264 45 65 chr9 76009964 76010346 -66261098 - L1MB2 LINE L1 -6474 385 12 856 242 194 61 chr9 76010348 76011097 -66260347 - L1MC4a LINE L1 -966 6842 5937 892 155 0 0 chr9 76011097 76011226 -66260218 + FLAM_C SINE Alu 1 129 -4 856 242 194 61 chr9 76011226 76011430 -66260014 - L1MC4a LINE L1 -1871 5937 5762 666 203 0 24 chr9 76011459 76011582 -66259862 - FLAM_C SINE Alu -21 122 3 376 280 65 0 chr9 76011605 76011773 -66259671 - L1MC4a LINE L1 -2058 5750 5572 1772 176 68 31 chr9 76011789 76012233 -66259211 - MLT1C LTR MaLR -2 465 6 349 269 58 18 chr9 76012272 76012443 -66259001 - L1MC4a LINE L1 -2283 5525 5348 204 315 27 14 chr9 76013159 76013232 -66258212 + MIR SINE MIR 37 110 -152 286 160 20 0 chr9 76013249 76013299 -66258145 + MER3 DNA MER1_type 159 209 0 * 461 135 22 45 chr9 76013299 76013348 -66258096 - MER3 DNA MER1_type -162 47 1 6527 70 30 0 chr9 76013396 76014568 -66256876 - L1PA8 LINE L1 -3 6169 4991 14864 182 29 34 chr9 76014712 76018311 -66253133 + L1P LINE L1 643 4224 -1922 258 200 0 0 chr9 76018965 76019010 -66252434 - L2 LINE L2 -5 3267 3223 2267 89 0 0 chr9 76019342 76019623 -66251821 + AluY SINE Alu 18 298 -13 2016 144 16 84 chr9 76020042 76020425 -66251019 + LTR18A LTR ERVL 1 357 0 1628 184 0 0 chr9 76020438 76020721 -66250723 + HERVL18 LTR ERVL 8 290 -5757 1536 206 34 3 chr9 76020724 76021044 -66250400 + HERVL18 LTR ERVL 638 967 -5080 1174 214 17 13 chr9 76021021 76021255 -66250189 + HERVL18 LTR ERVL 1380 1614 -4433 * 393 61 0 0 chr9 76021252 76021301 -66250143 + HERVL18 LTR ERVL 1775 1823 -4224 * 1085 109 80 3 chr9 76021299 76021527 -66249917 + HERVL18 LTR ERVL 2141 2450 -3597 4982 168 19 3 chr9 76021528 76022375 -66249069 + HERVL18 LTR ERVL 2720 3579 -2468 5474 150 5 5 chr9 76022377 76023245 -66248199 + HERVL18 LTR ERVL 4394 5261 -786 2179 168 19 3 chr9 76023246 76023616 -66247828 + HERVL18 LTR ERVL 5672 6047 0 1926 188 31 14 chr9 76023617 76023968 -66247476 + LTR18A LTR ERVL 1 357 0 434 209 87 35 chr9 76024692 76024807 -66246637 + MER5B DNA MER1_type 34 154 -24 1063 181 169 55 chr9 76024825 76025151 -66246293 - MLT1A1 LTR MaLR -2 363 1 436 196 20 29 chr9 76025473 76025575 -66245869 - MER5B DNA MER1_type -77 101 1 898 182 6 17 chr9 76025581 76025757 -66245687 + MER5B DNA MER1_type 5 178 0 504 221 11 0 chr9 76025802 76025897 -66245547 + MIR SINE MIR 48 143 -65 899 248 61 0 chr9 76027535 76027781 -66243663 - MIR SINE MIR -1 261 1 476 228 244 26 chr9 76027909 76028145 -66243299 + L2 LINE L2 2777 3050 -222 296 271 25 111 chr9 76028340 76028539 -66242905 - MIR SINE MIR -75 187 6 245 288 38 0 chr9 76028910 76028990 -66242454 + MIR3 SINE MIR 105 187 -21 614 250 133 60 chr9 76029205 76029537 -66241907 - LTR18A LTR ERVL -1 356 1 1324 179 32 0 chr9 76029707 76029958 -66241486 + LTR32 LTR ERVL 15 273 -198 525 152 30 10 chr9 76029992 76030091 -66241353 - LTR32 LTR ERVL -15 456 356 1470 160 56 0 chr9 76030191 76030478 -66240966 - LTR32 LTR ERVL -154 317 15 541 295 92 24 chr9 76031404 76031784 -66239660 + HAL1 LINE L1 325 730 -1777 2476 137 49 5 chr9 76031816 76032226 -66239218 + MSTA LTR MaLR 1 428 0 5073 154 42 2 chr9 76032236 76033124 -66238320 + MSTA-int LTR MaLR 10 932 -719 * 5940 150 9 14 chr9 76033121 76035153 -66236291 + L1PB1 LINE L1 4137 6151 0 4215 165 14 1 chr9 76035172 76035893 -66235551 + MSTA-int LTR MaLR 921 1650 -1 2307 157 51 5 chr9 76035894 76036303 -66235141 + MSTA LTR MaLR 1 428 0 1199 246 146 46 chr9 76036303 76037765 -66233679 + HAL1 LINE L1 756 2394 -113 22 0 0 0 chr9 76037880 76037902 -66233542 + AT_rich Low_complexity Low_complexity 1 22 0 2263 101 3 0 chr9 76037965 76038262 -66233182 + AluSg SINE Alu 1 298 -12 310 368 72 0 chr9 76038266 76038432 -66233012 - L1ME4a LINE L1 -251 5870 5693 376 149 27 0 chr9 76040094 76040168 -66231276 - AluYb8 SINE Alu -2 306 231 1939 141 0 3 chr9 76040168 76040451 -66230993 - AluSx SINE Alu -11 301 20 240 214 36 0 chr9 76040491 76040547 -66230897 - MER115 DNA AcHobo -634 59 2 3267 169 7 0 chr9 76040790 76041369 -66230075 + L1MB5 LINE L1 5586 6168 -6 1599 196 7 0 chr9 76041404 76041712 -66229732 + AluJb SINE Alu 1 310 0 508 139 0 0 chr9 76041996 76042082 -66229362 - L1PB1 LINE L1 -8 6143 6058 21 0 0 0 chr9 76042438 76042459 -66228985 + AT_rich Low_complexity Low_complexity 1 21 0 315 203 150 38 chr9 76043754 76043887 -66227557 + L1ME4a LINE L1 5972 6119 -2 1239 212 105 22 chr9 76045050 76045529 -66225915 - MER92C LTR ERV1 -2 552 2 6312 76 18 8 chr9 76045848 76047237 -66224207 + L1PA8 LINE L1 4763 6159 -13 245 246 77 15 chr9 76047249 76047314 -66224130 + MIR SINE MIR 52 120 -142 28477 61 7 3 chr9 76047738 76052391 -66219053 + L1PA7 LINE L1 1486 6153 -1 2140 106 53 0 chr9 76052393 76052733 -66218711 + L1MA1 LINE L1 5938 6295 -7 208 320 13 13 chr9 76052956 76053031 -66218413 - MIR SINE MIR -107 101 27 227 290 45 97 chr9 76053108 76053284 -66218160 + MER5A DNA MER1_type 1 167 -22 * 325 288 79 73 chr9 76053130 76053307 -66218137 - MER5A DNA MER1_type -6 183 6 518 336 0 0 chr9 76053382 76053531 -66217913 - L1PA13 LINE L1 -6424 363 215 2308 296 15 23 chr9 76053858 76054588 -66216856 + L1PA13 LINE L1 1 724 -6063 5641 250 33 18 chr9 76054611 76056952 -66214492 + L1PA13 LINE L1 1278 3680 -3117 2386 113 0 0 chr9 76056952 76057262 -66214182 + AluSq SINE Alu 1 310 -3 5641 250 33 18 chr9 76057262 76057658 -66213786 + L1PA13 LINE L1 3680 4069 -2728 1957 124 139 13 chr9 76057663 76058043 -66213401 - MSTA LTR MaLR 0 428 1 1910 149 12 20 chr9 76058043 76058385 -66213059 - MSTA-int LTR MaLR 0 1580 1242 808 157 12 0 chr9 76058545 76058711 -66212733 + CT-rich Low_complexity Low_complexity 1 168 0 180 353 0 0 chr9 76058715 76058766 -66212678 + L2 LINE L2 3249 3299 -14 249 196 71 18 chr9 76058974 76059030 -66212414 + MIR3 SINE MIR 120 178 -30 2208 125 0 6 chr9 76059246 76059558 -66211886 + AluSx SINE Alu 1 310 -2 416 285 34 73 chr9 76060081 76060260 -66211184 - MER5A DNA MER1_type -5 184 13 200 243 0 0 chr9 76060458 76060495 -66210949 + MER5A DNA MER1_type 152 188 -1 5235 159 17 13 chr9 76060603 76061330 -66210114 - L1PA15 LINE L1 -21 6144 5422 2339 101 3 0 chr9 76061330 76061637 -66209807 - AluY SINE Alu -3 308 1 5235 159 17 13 chr9 76061637 76062369 -66209075 - L1PA15 LINE L1 -743 5422 4679 407 175 0 0 chr9 76062376 76062456 -66208988 - L1 LINE L1 -2647 3499 3420 405 192 0 0 chr9 76062457 76062530 -66208914 + MSTA LTR MaLR 1 73 -355 7160 26 6 0 chr9 76062685 76063539 -66207905 + L1PA3 LINE L1 5297 6155 0 488 238 123 8 chr9 76063767 76063889 -66207555 - L2 LINE L2 0 3313 3178 214 256 61 122 chr9 76063927 76064091 -66207353 + MER5A DNA MER1_type 14 167 -22 * 425 282 52 58 chr9 76063945 76064119 -66207325 - MER5A DNA MER1_type -14 175 3 181 304 78 59 chr9 76064508 76064610 -66206834 + L2 LINE L2 3169 3272 0 1238 160 20 20 chr9 76065207 76065451 -66205993 + MER96B DNA MER1_type? 174 417 0 285 329 128 36 chr9 76065505 76065724 -66205720 + L2 LINE L2 3034 3272 0 422 327 38 6 chr9 76065786 76065945 -66205499 - MIR SINE MIR 0 262 99 3199 164 58 32 chr9 76066457 76067164 -66204280 + LTR8A LTR ERV1 3 727 0 180 0 0 0 chr9 76067189 76067209 -66204235 + (TG)n Simple_repeat Simple_repeat 2 21 0 601 175 0 0 chr9 76068000 76068097 -66203347 - U6 snRNA snRNA -10 97 1 1106 193 100 49 chr9 76069655 76070044 -66201400 - MLT2C2 LTR ERVL 0 464 56 495 238 16 8 chr9 76070340 76070462 -66200982 + LTR16C LTR ERVL 369 491 0 22 0 0 0 chr9 76070561 76070583 -66200861 + AT_rich Low_complexity Low_complexity 1 22 0 1883 163 3 3 chr9 76070852 76071153 -66200291 + AluSq SINE Alu 1 301 -12 20106 47 50 3 chr9 76071537 76074270 -66197174 + L1P LINE L1 2 2863 -3283 284 67 22 0 chr9 76074516 76074561 -66196883 + MADE1 DNA Mariner 1 46 -34 429 248 25 16 chr9 76074775 76074947 -66196497 + L1ME4a LINE L1 5703 5868 -264 2382 88 52 19 chr9 76075380 76075743 -66195701 + THE1C LTR MaLR 1 375 0 30 45 0 0 chr9 76076137 76076181 -66195263 + AT_rich Low_complexity Low_complexity 1 44 0 184 122 49 0 chr9 76076407 76076448 -66194996 + CT-rich Low_complexity Low_complexity 4 46 0 202 200 0 0 chr9 76076982 76077022 -66194422 + GA-rich Low_complexity Low_complexity 4 43 0 282 29 0 0 chr9 76077488 76077523 -66193921 + AluY SINE Alu 7 41 -261 13902 165 41 8 chr9 76077625 76081165 -66190279 + L1PA13 LINE L1 2588 6163 0 2808 10 0 0 chr9 76081248 76081554 -66189890 - AluYa5 SINE Alu -5 306 1 386 267 74 27 chr9 76082188 76082742 -66188702 + L1MC4a LINE L1 5254 5941 -1867 319 263 150 66 chr9 76082747 76082960 -66188484 + L1MC4a LINE L1 5920 6150 -1658 1384 231 198 40 chr9 76082986 76083035 -66188409 - LTR50 LTR ERVL -33 762 722 2485 64 0 10 chr9 76083035 76083349 -66188095 + AluY SINE Alu 1 311 0 1384 231 198 40 chr9 76083349 76083957 -66187487 - LTR50 LTR ERVL -73 722 1 394 300 172 22 chr9 76083957 76084224 -66187220 + L1MC4a LINE L1 6138 6444 -1364 1348 282 47 47 chr9 76084416 76084761 -66186683 + L1MC4 LINE L1 6703 7047 -995 2068 124 24 10 chr9 76084761 76085059 -66186385 + AluSx SINE Alu 1 302 -10 1348 282 47 47 chr9 76085059 76085457 -66185987 + L1MC4 LINE L1 7046 7446 -596 430 222 80 40 chr9 76085445 76085504 -66185940 + L1MC5 LINE L1 7261 7316 -645 * 2146 154 14 0 chr9 76085504 76085862 -66185582 - MER47A DNA MER2_type -3 363 1 430 222 80 40 chr9 76085862 76085978 -66185466 + L1MC5 LINE L1 7316 7443 -518 582 86 14 129 chr9 76086047 76086187 -66185257 + L1MCa LINE L1 1275 1398 -5028 215 219 0 0 chr9 76086187 76086228 -66185216 + (CA)n Simple_repeat Simple_repeat 2 42 0 5389 167 49 32 chr9 76086281 76086915 -66184529 + L1MC1 LINE L1 4697 5319 -1014 1736 176 17 26 chr9 76086915 76087217 -66184227 + AluJo SINE Alu 6 304 -8 5389 167 49 32 chr9 76087217 76087713 -66183731 + L1MC1 LINE L1 5319 5805 -528 1802 164 7 7 chr9 76087713 76088011 -66183433 + AluJo SINE Alu 3 300 -12 5389 167 49 32 chr9 76088011 76088484 -66182960 + L1MC1 LINE L1 5805 6333 0 1538 214 68 50 chr9 76088562 76088840 -66182604 + L1ME1 LINE L1 4340 4611 -1535 1652 102 9 0 chr9 76088840 76089065 -66182379 + AluSc SINE Alu 83 309 0 1538 214 68 50 chr9 76089065 76089370 -66182074 + L1ME1 LINE L1 4611 4934 -1212 658 225 22 44 chr9 76089370 76089552 -66181892 + MER77 LTR ERV1 1 178 -427 5385 138 45 12 chr9 76089554 76090559 -66180885 + L1PB3 LINE L1 4616 5675 -479 6881 105 28 19 chr9 76090559 76091620 -66179824 + MER11C LTR ERVK 1 1071 0 5385 138 45 12 chr9 76091620 76092113 -66179331 + L1PB3 LINE L1 5675 6150 -4 679 195 63 11 chr9 76092182 76092356 -66179088 - L1MB4 LINE L1 -1 6179 5997 * 2266 208 33 113 chr9 76092350 76092839 -66178605 + L1ME1 LINE L1 5388 5784 -382 2213 118 7 10 chr9 76092839 76093144 -66178300 - AluSx SINE Alu -8 304 1 2266 208 33 113 chr9 76093144 76093495 -66177949 + L1ME1 LINE L1 5784 6161 -5 1730 202 34 11 chr9 76093836 76094192 -66177252 - MLT1A1 LTR MaLR 0 365 2 1990 119 11 3 chr9 76095381 76095667 -66175777 + AluSq SINE Alu 1 288 -25 201 203 0 136 chr9 76095778 76095837 -66175607 - MER5B DNA MER1_type -124 54 4 11924 175 53 18 chr9 76097465 76099881 -66171563 + L1M1 LINE L1 13 2512 -5053 10817 133 22 15 chr9 76099889 76102423 -66169021 + L1P3 LINE L1 6 2577 -3884 5730 171 44 9 chr9 76102555 76103169 -66168275 - L1 LINE L1 -789 6776 6185 180 0 0 0 chr9 76103169 76103189 -66168255 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5730 171 44 9 chr9 76103189 76103886 -66167558 - L1 LINE L1 -1380 6185 5419 1529 184 49 9 chr9 76103892 76104218 -66167226 - L1 LINE L1 -7215 350 12 2010 76 8 8 chr9 76104300 76104589 -66166855 + AluY SINE Alu 22 310 0 1668 165 41 0 chr9 76104933 76105236 -66166208 - MLT1B LTR MaLR 0 390 75 4029 143 83 9 chr9 76105236 76106361 -66165083 + Tigger3(Golem) DNA MER2_type 2 3008 -21 435 128 13 39 chr9 76106366 76106444 -66165000 - MLT1B LTR MaLR -314 76 1 369 258 141 57 chr9 76107700 76107983 -66163461 - L1MC4 LINE L1 -31 8011 7705 * 7639 198 35 15 chr9 76107972 76108239 -66163205 - L1PA16 LINE L1 -298 5868 5608 2332 101 7 0 chr9 76108239 76108547 -66162897 - AluSp SINE Alu -3 310 1 7639 198 35 15 chr9 76108547 76110542 -66160902 - L1PA16 LINE L1 -558 5608 3568 1866 163 0 14 chr9 76110542 76110836 -66160608 - AluSx SINE Alu -22 290 1 7639 198 35 15 chr9 76110836 76111030 -66160414 - L1PA16 LINE L1 -2598 3568 3379 24076 117 21 9 chr9 76111032 76115904 -66155540 - L1PA11 LINE L1 0 6489 1567 5772 129 39 32 chr9 76115912 76116915 -66154529 - L1PA11 LINE L1 -5446 1015 6 22 0 0 0 chr9 76117091 76117113 -66154331 + AT_rich Low_complexity Low_complexity 1 22 0 10692 232 53 12 chr9 76117581 76121815 -66149629 + L1PA16 LINE L1 1748 6150 -16 351 0 0 0 chr9 76122091 76122130 -66149314 + (CA)n Simple_repeat Simple_repeat 2 40 0 218 329 0 0 chr9 76122132 76122202 -66149242 - L2 LINE L2 -261 3011 2942 4975 156 53 23 chr9 76122388 76123449 -66147995 + L1MA5A LINE L1 4681 5811 -486 369 0 0 0 chr9 76123449 76123490 -66147954 + (CA)n Simple_repeat Simple_repeat 2 42 0 4975 156 53 23 chr9 76123490 76123991 -66147453 + L1MA5A LINE L1 5811 6295 -2 373 309 58 36 chr9 76125141 76125280 -66146164 - MIR3 SINE MIR -48 160 19 21 36 0 0 chr9 76125647 76125675 -66145769 + AT_rich Low_complexity Low_complexity 1 28 0 215 271 0 0 chr9 76125934 76125982 -66145462 - L2 LINE L2 0 3272 3225 2179 137 17 0 chr9 76126724 76127081 -66144363 - L1PB1 LINE L1 -7 6860 6498 267 94 101 27 chr9 76127087 76127236 -66144208 + (CATAT)n Simple_repeat Simple_repeat 4 163 0 270 56 0 0 chr9 76127247 76127283 -66144161 + (CA)n Simple_repeat Simple_repeat 2 37 0 6969 180 10 1 chr9 76127283 76129269 -66142175 - L1PB1 LINE L1 -369 6498 4492 195 69 0 0 chr9 76129270 76129299 -66142145 + (T)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr9 76129340 76129362 -66142082 + AT_rich Low_complexity Low_complexity 1 22 0 800 269 58 0 chr9 76129466 76129723 -66141721 + L1M4 LINE L1 3958 4229 -1917 40 0 0 0 chr9 76129792 76129832 -66141612 + AT_rich Low_complexity Low_complexity 1 40 0 1921 73 0 0 chr9 76129892 76130138 -66141306 - L1PA3 LINE L1 -3 6152 5907 41303 43 4 6 chr9 76130239 76135902 -66135542 - L1P2 LINE L1 -502 5653 2 10079 194 94 8 chr9 76135902 76140045 -66131399 - L1PB1 LINE L1 -2358 4504 6 21 0 0 0 chr9 76140127 76140148 -66131296 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 76140179 76140228 -66131216 + AT_rich Low_complexity Low_complexity 1 49 0 363 156 60 9 chr9 76140231 76140319 -66131125 - L1MA5 LINE L1 -4 6293 6198 2624 104 92 5 chr9 76140321 76140733 -66130711 - LTR7 LTR ERV1 -2 448 1 7471 104 23 5 chr9 76140733 76141897 -66129547 - HERVH LTR ERV1 0 7713 6529 4091 85 2 0 chr9 76141870 76142481 -66128963 - HERVH LTR ERV1 -1333 6380 5769 * 1188 111 0 0 chr9 76142477 76142657 -66128787 - HERVH LTR ERV1 -3046 4667 4488 * 3003 125 16 6 chr9 76142659 76143156 -66128288 - HERVH LTR ERV1 -3720 3993 3492 892 133 7 0 chr9 76143146 76143296 -66128148 - HERVH LTR ERV1 -4423 3290 3140 * 17426 106 19 41 chr9 76143275 76146338 -66125106 - HERVH LTR ERV1 -4718 2995 1 2660 95 92 5 chr9 76146340 76146752 -66124692 - LTR7 LTR ERV1 -2 448 1 697 182 150 5 chr9 76146753 76146940 -66124504 - L1MA5 LINE L1 -99 6201 5988 459 214 20 20 chr9 76147147 76147245 -66124199 - MER2 DNA MER2_type -247 98 1 21 0 0 0 chr9 76147357 76147378 -66124066 + AT_rich Low_complexity Low_complexity 1 21 0 261 83 0 0 chr9 76147555 76147591 -66123853 + (T)n Simple_repeat Simple_repeat 1 36 0 679 193 44 0 chr9 76148048 76148183 -66123261 - MER5A DNA MER1_type -2 187 47 291 254 86 88 chr9 76148213 76148369 -66123075 + LTR16C LTR ERVL 50 205 -286 3619 137 30 30 chr9 76148369 76149004 -66122440 - MER41B LTR ERV1 0 635 1 291 254 86 88 chr9 76149004 76149256 -66122188 + LTR16C LTR ERVL 205 491 0 1765 142 230 40 chr9 76149380 76149825 -66121619 + LTR49 LTR ERV1 1 553 -42 2274 99 3 3 chr9 76149825 76150128 -66121316 - AluY SINE Alu -8 303 1 1765 142 230 40 chr9 76150128 76150182 -66121262 + LTR49 LTR ERV1 553 595 0 45 45 0 0 chr9 76150302 76150368 -66121076 + AT_rich Low_complexity Low_complexity 1 66 0 218 214 13 75 chr9 76150483 76150642 -66120802 + T-rich Low_complexity Low_complexity 3 151 0 2132 130 13 3 chr9 76150789 76151096 -66120348 + AluSx SINE Alu 3 312 0 195 364 74 8 chr9 76151696 76151817 -66119627 + MIR3 SINE MIR 45 173 -35 5048 100 98 35 chr9 76151841 76152934 -66118510 - MER11A LTR ERVK 0 1266 1 3332 134 62 58 chr9 76153071 76153396 -66118048 + LTR8A LTR ERV1 1 323 -404 2986 85 2 0 chr9 76153396 76153798 -66117646 - L1PA7 LINE L1 -7 6147 5745 3332 134 62 58 chr9 76153798 76154196 -66117248 + LTR8A LTR ERV1 323 727 0 1363 197 96 29 chr9 76155465 76155850 -66115594 + MER119 DNA MER1_type 109 519 -64 257 315 47 74 chr9 76156133 76156282 -66115162 - MIR3 SINE MIR -13 195 51 27 29 0 0 chr9 76156759 76156793 -66114651 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr9 76158090 76158117 -66113327 + AT_rich Low_complexity Low_complexity 1 27 0 310 324 115 14 chr9 76158215 76158354 -66113090 + MIR SINE MIR 95 247 -15 193 121 30 0 chr9 76158326 76158359 -66113085 + L2 LINE L2 3265 3298 -15 * 294 273 72 50 chr9 76158698 76158837 -66112607 - MIR3 SINE MIR 0 208 67 365 267 113 33 chr9 76160481 76160631 -66110813 - MIR SINE MIR -56 206 45 349 286 124 43 chr9 76161248 76161458 -66109986 + MIR SINE MIR 10 236 -26 312 301 125 48 chr9 76162145 76162434 -66109010 - LTR16A1 LTR ERVL 0 457 147 315 122 0 0 chr9 76163410 76163459 -66107985 + (CA)n Simple_repeat Simple_repeat 2 50 0 1116 292 60 12 chr9 76163671 76164089 -66107355 + MLT1J1 LTR MaLR 2 439 -7 457 337 98 46 chr9 76164317 76164986 -66106458 + L2 LINE L2 2349 3063 -209 441 0 0 0 chr9 76165374 76165423 -66106021 + (CA)n Simple_repeat Simple_repeat 2 50 0 2746 10 0 0 chr9 76165641 76165943 -66105501 - AluYa5 SINE Alu -9 302 1 183 167 0 0 chr9 76166910 76166952 -66104492 + CT-rich Low_complexity Low_complexity 1 42 0 200 35 35 0 chr9 76167207 76167236 -66104208 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 375 303 45 13 chr9 76168406 76168561 -66102883 - MIR SINE MIR -56 206 47 1966 137 20 0 chr9 76169070 76169403 -66102041 - AluSx SINE Alu 0 343 5 24 32 0 0 chr9 76170270 76170301 -66101143 + AT_rich Low_complexity Low_complexity 1 31 0 2145 112 11 0 chr9 76170301 76170587 -66100857 + AluSg SINE Alu 1 289 -21 414 133 0 0 chr9 76170588 76170678 -66100766 + (TA)n Simple_repeat Simple_repeat 1 90 0 605 280 36 6 chr9 76171663 76171831 -66099613 + MIR SINE MIR 32 204 -58 1590 141 0 4 chr9 76172062 76172318 -66099126 + L1P4 LINE L1 5426 5680 -486 691 297 151 9 chr9 76172319 76172669 -66098775 - L2 LINE L2 -86 3227 2828 186 360 23 0 chr9 76173665 76173751 -66097693 + MIR SINE MIR 34 121 -87 2243 222 60 66 chr9 76174459 76176666 -66094778 + L1M3c LINE L1 2077 4149 -3416 321 196 18 0 chr9 76176666 76176722 -66094722 + Tigger7 DNA MER2_type 2431 2487 0 1835 143 54 54 chr9 76176724 76177258 -66094186 + L1MA9 LINE L1 5614 6280 -32 488 296 29 17 chr9 76177846 76178018 -66093426 + MLT1I LTR MaLR 102 275 -134 543 306 52 4 chr9 76178173 76178421 -66093023 - MIR SINE MIR -2 260 1 197 268 0 0 chr9 76178430 76178471 -66092973 + MIR SINE MIR 106 146 -62 365 218 178 0 chr9 76180524 76180625 -66090819 + L2 LINE L2 3195 3313 0 425 236 138 24 chr9 76180982 76181105 -66090339 + MIR SINE MIR 21 157 -105 723 239 59 50 chr9 76181123 76181172 -66090272 - MIR SINE MIR -32 230 183 1030 223 59 79 chr9 76181172 76181576 -66089868 - MSTD LTR MaLR 0 396 1 723 239 59 50 chr9 76181576 76181748 -66089696 - MIR SINE MIR -79 183 7 225 312 32 0 chr9 76181744 76181837 -66089607 + MIR SINE MIR 162 257 -5 * 1005 132 216 5 chr9 76182082 76182272 -66089172 + MER30 DNA MER1_type 1 230 0 315 0 0 0 chr9 76182710 76182745 -66088699 + (CA)n Simple_repeat Simple_repeat 1 35 0 525 238 24 34 chr9 76183159 76183341 -66088103 - MER5A DNA MER1_type -6 183 4 2165 63 0 8 chr9 76183770 76184038 -66087406 - AluY SINE Alu -5 306 41 288 286 0 80 chr9 76184078 76184190 -66087254 + L2 LINE L2 3210 3312 -1 303 325 67 0 chr9 76184701 76184821 -66086623 + L2 LINE L2 3181 3308 -5 757 175 88 53 chr9 76184972 76185200 -66086244 - MER106A DNA MER1_type 0 236 1 341 300 33 0 chr9 76185279 76185399 -66086045 + MLT1J LTR MaLR 1 124 -387 260 255 29 39 chr9 76185419 76185521 -66085923 + MLT1J LTR MaLR 76 176 -335 271 229 72 0 chr9 76185521 76185604 -66085840 + MLT1J LTR MaLR 423 511 0 26 82 0 0 chr9 76185671 76185732 -66085712 + AT_rich Low_complexity Low_complexity 1 61 0 399 73 0 0 chr9 76186437 76186492 -66084952 + (TG)n Simple_repeat Simple_repeat 1 55 0 467 262 117 77 chr9 76186782 76187225 -66084219 + MLT1L LTR MaLR 3 463 -152 319 197 0 0 chr9 76187701 76187767 -66083677 + MLT1L LTR MaLR 546 611 -4 223 369 140 0 chr9 76187984 76188142 -66083302 + MIR SINE MIR 1 181 -67 2050 162 82 15 chr9 76188579 76188980 -66082464 - MSTA LTR MaLR 0 428 1 1238 107 44 27 chr9 76188980 76189205 -66082239 - MSTA-int LTR MaLR 0 1580 1352 * 1818 122 6 16 chr9 76189203 76189514 -66081930 - MSTA-int LTR MaLR -1343 308 1 2179 144 86 10 chr9 76189514 76189910 -66081534 - MSTA LTR MaLR 0 428 3 217 205 0 0 chr9 76192128 76192167 -66079277 + CT-rich Low_complexity Low_complexity 1 39 0 2368 51 6 38 chr9 76192782 76193098 -66078346 - AluY SINE Alu -5 306 1 748 281 58 31 chr9 76193376 76193600 -66077844 - MIR SINE MIR -26 236 7 1372 243 19 74 chr9 76195923 76196396 -66075048 - MER74C LTR ERVL 0 460 14 403 297 3 22 chr9 76197150 76197306 -66074138 + LTR16A LTR ERVL 82 235 -215 389 261 0 8 chr9 76197309 76197439 -66074005 + MLT2B1 LTR ERVL 3 131 -389 337 212 4 0 chr9 76197440 76197509 -66073935 + MLT2B1 LTR ERVL 283 356 -162 2814 127 44 33 chr9 76197509 76198173 -66073271 + LTR8A LTR ERV1 1 727 0 489 240 0 0 chr9 76198180 76198276 -66073168 + MLT2B2 LTR ERVL 355 450 -65 420 267 57 44 chr9 76198332 76198536 -66072908 + LTR16A LTR ERVL 253 450 0 562 290 50 11 chr9 76198772 76199051 -66072393 + L1M4 LINE L1 3688 3977 -2169 215 349 72 0 chr9 76199277 76199360 -66072084 + L2 LINE L2 3146 3234 -38 192 77 0 0 chr9 76199962 76199988 -66071456 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 381 167 42 21 chr9 76200024 76200168 -66071276 + (TCTA)n Simple_repeat Simple_repeat 4 150 0 840 292 63 24 chr9 76200203 76200637 -66070807 + MLT1K LTR MaLR 46 569 -19 251 250 152 9 chr9 76200650 76200762 -66070682 - L2 LINE L2 -195 3077 2950 477 313 100 24 chr9 76200886 76201295 -66070149 - L2 LINE L2 -785 2529 2090 949 210 0 0 chr9 76201372 76201548 -66069896 + FRAM SINE Alu 1 176 0 248 331 177 8 chr9 76202153 76202277 -66069167 + MIR SINE MIR 34 178 -84 216 67 0 0 chr9 76202891 76202921 -66068523 + (A)n Simple_repeat Simple_repeat 1 30 0 243 299 89 8 chr9 76204854 76205003 -66066441 + MIR SINE MIR 13 143 -65 227 354 13 0 chr9 76205635 76205714 -66065730 + L2 LINE L2 3193 3272 0 432 204 139 0 chr9 76206591 76206699 -66064745 - MIR3 SINE MIR -44 164 42 223 246 31 0 chr9 76208265 76208330 -66063114 + MIR SINE MIR 84 150 -112 261 291 25 0 chr9 76208644 76208723 -66062721 + MIR SINE MIR 164 244 -18 2505 87 0 0 chr9 76209152 76209462 -66061982 + AluY SINE Alu 1 310 -1 730 315 120 3 chr9 76209765 76210089 -66061355 + L2 LINE L2 2443 2804 -510 202 413 0 0 chr9 76210300 76210479 -66060965 + (CA)n Simple_repeat Simple_repeat 1 179 0 216 0 0 0 chr9 76210492 76210516 -66060928 + (CA)n Simple_repeat Simple_repeat 2 25 0 279 191 0 0 chr9 76210611 76210674 -66060770 + (CA)n Simple_repeat Simple_repeat 2 64 0 1873 204 11 32 chr9 76210784 76211157 -66060287 - MLT1A1 LTR MaLR 0 365 1 610 238 48 7 chr9 76211160 76211307 -66060137 + L2 LINE L2 3161 3313 0 250 272 53 70 chr9 76211438 76211552 -66059892 + MIR SINE MIR 81 192 -70 1143 261 82 42 chr9 76212794 76213270 -66058174 - MLT1J LTR MaLR 0 511 17 328 338 22 44 chr9 76213750 76213886 -66057558 - L2 LINE L2 0 3272 3140 2040 105 22 0 chr9 76214056 76214333 -66057111 + AluSp SINE Alu 1 283 -30 731 191 0 16 chr9 76215944 76216127 -66055317 + CT-rich Low_complexity Low_complexity 1 180 0 2334 161 0 15 chr9 76217792 76218134 -66053310 + MER1B DNA MER1_type 1 337 0 225 158 0 0 chr9 76218321 76218359 -66053085 - MER115 DNA AcHobo -15 678 641 790 293 87 0 chr9 76218529 76218782 -66052662 - MER115 DNA AcHobo -416 277 3 24 0 0 0 chr9 76219085 76219109 -66052335 + AT_rich Low_complexity Low_complexity 1 24 0 300 266 122 36 chr9 76220226 76220365 -66051079 + MIR SINE MIR 54 204 -58 3749 99 71 6 chr9 76220412 76220945 -66050499 - L1PA10 LINE L1 0 6168 5601 213 236 0 36 chr9 76222917 76222972 -66048472 + MIR SINE MIR 68 120 -142 502 241 29 15 chr9 76223635 76223772 -66047672 - MIR SINE MIR -73 189 51 600 293 108 51 chr9 76224756 76224812 -66046632 + L2 LINE L2 2615 2666 -647 1056 172 50 0 chr9 76224812 76224992 -66046452 - MER5A DNA MER1_type 0 189 1 600 293 108 51 chr9 76224992 76225591 -66045853 + L2 LINE L2 2666 3308 -5 1951 159 0 28 chr9 76226389 76226710 -66044734 + AluSx SINE Alu 1 312 0 268 209 45 0 chr9 76227218 76227285 -66044159 - MER94 DNA DNA -64 70 1 638 204 0 9 chr9 76227352 76227465 -66043979 + MER3 DNA MER1_type 1 112 -97 529 136 64 55 chr9 76227496 76227606 -66043838 + MER3 DNA MER1_type 99 209 0 216 0 0 0 chr9 76228453 76228477 -66042967 + (TCTCC)n Simple_repeat Simple_repeat 2 25 0 2273 165 25 2 chr9 76228910 76229317 -66042127 + L1MB2 LINE L1 5755 6170 -1 249 260 247 20 chr9 76229554 76229700 -66041744 - MIR SINE MIR -10 252 74 448 297 23 44 chr9 76229749 76229986 -66041458 - MIR SINE MIR -12 250 21 64 0 0 0 chr9 76230042 76230106 -66041338 + AT_rich Low_complexity Low_complexity 1 64 0 266 251 251 40 chr9 76232100 76232275 -66039169 + L2 LINE L2 2575 2786 -528 23 0 0 0 chr9 76232275 76232298 -66039146 + AT_rich Low_complexity Low_complexity 1 23 0 3483 107 2 0 chr9 76232298 76232757 -66038687 - L1PA13 LINE L1 -11 6152 5693 773 71 125 0 chr9 76232759 76232871 -66038573 - LTR1 LTR ERV1 -315 470 345 1671 89 78 45 chr9 76232877 76233146 -66038298 - L1PA13 LINE L1 -187 5976 5699 1263 172 65 31 chr9 76233254 76233555 -66037889 - LTR1 LTR ERV1 -534 251 1 3200 112 6 8 chr9 76233598 76234072 -66037372 - L1P4 LINE L1 -435 5726 5254 * 4965 166 9 24 chr9 76234071 76234989 -66036455 - L1P4 LINE L1 -2054 4092 3189 559 348 83 55 chr9 76234994 76235420 -66036024 + L2 LINE L2 2777 3220 -52 258 156 0 0 chr9 76235433 76235478 -66035966 + (TG)n Simple_repeat Simple_repeat 2 46 0 1959 91 0 12 chr9 76236769 76237065 -66034379 + AluSp SINE Alu 35 327 0 206 241 37 0 chr9 76237675 76237729 -66033715 + CT-rich Low_complexity Low_complexity 5 60 0 1665 176 10 10 chr9 76239091 76239386 -66032058 + AluJo SINE Alu 12 306 -6 187 309 0 0 chr9 76239459 76239514 -66031930 + L2 LINE L2 3251 3305 -8 204 158 0 0 chr9 76239531 76239569 -66031875 + GA-rich Low_complexity Low_complexity 1 38 0 221 274 0 0 chr9 76241004 76241055 -66030389 + L2 LINE L2 3040 3090 -182 475 255 42 57 chr9 76241113 76241305 -66030139 + MIR SINE MIR 74 262 0 197 351 85 0 chr9 76241313 76241407 -66030037 + L2 LINE L2 3208 3309 -4 291 286 92 17 chr9 76241762 76241881 -66029563 + MIR SINE MIR 20 147 -115 512 301 16 11 chr9 76241884 76242070 -66029374 + MIR SINE MIR 28 214 -48 209 365 94 41 chr9 76243219 76243463 -66027981 - L2 LINE L2 -14 3258 3002 303 307 81 45 chr9 76244082 76244249 -66027195 - MIR3 SINE MIR -73 135 13 228 272 105 86 chr9 76245530 76245692 -66025752 - MIR SINE MIR -50 212 48 252 296 12 0 chr9 76246069 76246150 -66025294 + MLT1L LTR MaLR 196 277 -338 230 280 42 17 chr9 76247090 76247129 -66024315 - L1MA4A LINE L1 -1 6302 6264 427 270 18 0 chr9 76247129 76247240 -66024204 - L1PB4 LINE L1 -23 6133 6021 288 253 132 52 chr9 76247504 76247678 -66023766 + L1M3 LINE L1 3995 4182 -1964 1137 292 92 15 chr9 76247817 76248701 -66022743 + L1M3 LINE L1 4480 5432 -743 4488 58 0 6 chr9 76249311 76249844 -66021600 + L1PA6 LINE L1 5618 6147 -7 273 335 113 22 chr9 76251259 76251444 -66020000 + MIR SINE MIR 34 235 -27 287 225 56 0 chr9 76252433 76252504 -66018940 - MIR SINE MIR -71 191 117 252 0 0 0 chr9 76254053 76254081 -66017363 + (CA)n Simple_repeat Simple_repeat 2 29 0 360 0 0 0 chr9 76254130 76254170 -66017274 + (TA)n Simple_repeat Simple_repeat 2 41 0 221 416 0 0 chr9 76255441 76255530 -66015914 + L2 LINE L2 2967 3055 -217 1008 71 0 0 chr9 76256003 76256129 -66015315 - AluSg/x SINE Alu -12 298 173 1335 113 6 0 chr9 76256317 76256494 -66014950 - AluSc SINE Alu -131 178 1 208 290 122 47 chr9 76256499 76256606 -66014838 + L2 LINE L2 3158 3272 0 279 315 48 42 chr9 76257872 76258037 -66013407 - MIR SINE MIR -74 188 23 309 371 70 27 chr9 76260613 76260799 -66010645 - L2 LINE L2 -10 3262 3069 243 0 0 0 chr9 76260860 76260887 -66010557 + (CA)n Simple_repeat Simple_repeat 2 28 0 229 229 115 10 chr9 76262385 76262481 -66008963 - MER103 DNA DNA -22 144 39 838 168 19 7 chr9 76263159 76263314 -66008130 + Tigger1 DNA MER2_type 1 157 -2261 * 891 117 117 58 chr9 76263303 76263508 -66007936 + Tigger1 DNA MER2_type 2202 2418 0 225 279 0 0 chr9 76263701 76263762 -66007682 - MER113 DNA MER1_type? -48 473 413 610 211 90 0 chr9 76263774 76263907 -66007537 - AluJb SINE Alu -3 309 165 388 230 71 9 chr9 76263911 76264024 -66007420 - MER113 DNA MER1_type? -121 400 281 317 318 39 16 chr9 76265409 76265538 -66005906 - MIR SINE MIR -105 157 26 2171 61 4 0 chr9 76265948 76266212 -66005232 + AluY SINE Alu 39 303 -8 1470 240 73 29 chr9 76267579 76268059 -66003385 + MLT1J LTR MaLR 3 503 -8 199 188 62 0 chr9 76268595 76268643 -66002801 - L2 LINE L2 -31 3282 3232 577 256 188 47 chr9 76268810 76269124 -66002320 - L1ME4a LINE L1 0 6121 5853 2246 111 0 0 chr9 76269124 76269422 -66002022 + AluY SINE Alu 1 298 -13 577 256 188 47 chr9 76269422 76269814 -66001630 - L1ME4a LINE L1 -268 5853 5315 314 258 101 0 chr9 76270128 76270217 -66001227 - L1ME4a LINE L1 -1311 4835 4738 1319 335 100 44 chr9 76270224 76271688 -65999756 - L2 LINE L2 -8 3264 1713 38 68 0 0 chr9 76271955 76272028 -65999416 + AT_rich Low_complexity Low_complexity 1 73 0 1425 238 92 38 chr9 76272694 76272738 -65998706 - L1ME1 LINE L1 -4 6162 6122 1837 203 86 22 chr9 76272738 76273227 -65998217 - MLT2B1 LTR ERVL 0 520 1 1425 238 92 38 chr9 76273227 76273715 -65997729 - L1ME1 LINE L1 -44 6122 5601 229 299 41 30 chr9 76273743 76273940 -65997504 - L1ME4a LINE L1 -3613 2533 2335 698 263 155 26 chr9 76274004 76274468 -65996976 - HAL1 LINE L1 -6 2501 1978 2095 107 11 0 chr9 76274847 76275149 -65996295 + AluSq SINE Alu 1 305 0 357 311 78 32 chr9 76275162 76275445 -65995999 - L2 LINE L2 -661 2653 2358 436 283 138 18 chr9 76278253 76278668 -65992776 + LTR33 LTR ERVL 28 514 -7 208 238 0 0 chr9 76278996 76279038 -65992406 + CT-rich Low_complexity Low_complexity 4 45 0 1791 123 0 0 chr9 76279048 76279291 -65992153 + AluSx SINE Alu 58 300 -12 2399 124 25 0 chr9 76279405 76279760 -65991684 + THE1B LTR MaLR 1 364 0 264 200 17 17 chr9 76280588 76280648 -65990796 + MLT1K LTR MaLR 525 584 -4 452 305 120 13 chr9 76280807 76281040 -65990404 - MIR SINE MIR -1 261 4 407 294 7 62 chr9 76281922 76282068 -65989376 - MIR3 SINE MIR -19 189 52 698 255 49 114 chr9 76283332 76283707 -65987737 - MLT1J2 LTR MaLR -2 428 67 3291 139 9 18 chr9 76284226 76284794 -65986650 - L1MB1 LINE L1 0 6168 5606 1467 154 63 57 chr9 76284794 76285240 -65986204 + L1MB1 LINE L1 5148 5595 -576 292 395 49 24 chr9 76285240 76285445 -65985999 + MLT1K LTR MaLR 35 244 -344 1814 158 0 11 chr9 76285465 76285776 -65985668 - AluSc SINE Alu 0 308 1 4168 277 170 21 chr9 76285795 76287627 -65983817 + L2 LINE L2 601 2706 -608 619 297 94 31 chr9 76287627 76287883 -65983561 - L2 LINE L2 -582 2732 2461 731 158 95 19 chr9 76288208 76288366 -65983078 - THE1B LTR MaLR 0 364 195 237 296 70 0 chr9 76288853 76288924 -65982520 - MER91C DNA MER1_type -64 76 1 202 339 16 0 chr9 76289266 76289328 -65982116 - L2 LINE L2 -3 3269 3207 21 57 0 0 chr9 76289385 76289420 -65982024 + AT_rich Low_complexity Low_complexity 1 35 0 1474 173 33 45 chr9 76290023 76290358 -65981086 - MLT1B LTR MaLR 0 390 60 421 222 0 0 chr9 76290388 76290469 -65980975 - MLT1B LTR MaLR -309 81 1 5799 103 38 8 chr9 76290753 76291757 -65979687 - L1PA15 LINE L1 -12 6153 5162 234 118 0 0 chr9 76293356 76293390 -65978054 - HSMAR1 DNA Mariner 0 1287 1254 399 248 18 35 chr9 76293675 76293788 -65977656 - MIR3 SINE MIR 0 208 98 472 274 131 62 chr9 76293812 76294118 -65977326 - MARNA DNA Mariner -213 373 47 22 0 0 0 chr9 76294318 76294340 -65977104 + AT_rich Low_complexity Low_complexity 1 22 0 238 234 0 0 chr9 76294622 76294669 -65976775 + MLT1L LTR MaLR 5 51 -564 653 265 137 61 chr9 76294710 76295038 -65976406 + MLT1J LTR MaLR 156 508 -3 4484 204 57 12 chr9 76295741 76297594 -65973850 - L1MB2 LINE L1 -3 6168 4237 926 317 78 17 chr9 76297665 76298377 -65973067 - L2 LINE L2 -2 3311 2561 21 0 0 0 chr9 76299493 76299514 -65971930 + AT_rich Low_complexity Low_complexity 1 21 0 2685 223 72 71 chr9 76299516 76300623 -65970821 - L1MC4 LINE L1 0 8042 6935 1576 169 53 9 chr9 76300642 76300980 -65970464 - L1MC3 LINE L1 -2 7783 7431 935 256 27 62 chr9 76300982 76301702 -65969742 - L1MC4 LINE L1 -974 6834 6164 437 237 5 8 chr9 76301729 76301910 -65969534 - MER58B DNA MER1_type -1 340 1 595 239 109 119 chr9 76302009 76302632 -65968812 + MLT1G1 LTR MaLR 9 590 0 1978 261 132 46 chr9 76302638 76302664 -65968780 - L1MC4a LINE L1 -743 5403 5381 1923 178 0 65 chr9 76302664 76303081 -65968363 - MLT1B LTR MaLR 0 390 1 1978 261 132 46 chr9 76303081 76304134 -65967310 - L1MC4a LINE L1 -765 5381 4750 1658 183 3 36 chr9 76304134 76304440 -65967004 - AluJo SINE Alu -16 296 1 1978 261 132 46 chr9 76304440 76305225 -65966219 - L1MC4a LINE L1 -1396 4750 4034 338 273 50 20 chr9 76305236 76305335 -65966109 + L1MC4 LINE L1 6602 6703 -1339 398 234 27 27 chr9 76305875 76305986 -65965458 - MER81 DNA DNA -3 111 1 2324 159 51 39 chr9 76307930 76308189 -65963255 - MER6A DNA MER2_type -261 604 350 1991 118 13 33 chr9 76308189 76308493 -65962951 + AluY SINE Alu 1 298 -13 2324 159 51 39 chr9 76308493 76308743 -65962701 - MER6A DNA MER2_type -515 350 89 542 147 0 178 chr9 76309332 76309489 -65961955 - MER6A DNA MER2_type -476 129 1 1926 159 0 0 chr9 76310049 76310344 -65961100 - AluJb SINE Alu -17 295 1 27 29 0 0 chr9 76310457 76310491 -65960953 + AT_rich Low_complexity Low_complexity 1 34 0 862 167 0 14 chr9 76310981 76311119 -65960325 + FRAM SINE Alu 11 146 -30 222 37 0 0 chr9 76311121 76311148 -65960296 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr9 76311148 76311170 -65960274 + AT_rich Low_complexity Low_complexity 1 22 0 1627 222 75 45 chr9 76311462 76311567 -65959877 + MER45B DNA AcHobo 1 101 -939 2792 13 0 3 chr9 76311567 76311878 -65959566 - AluYa5 SINE Alu -1 310 1 1627 222 75 45 chr9 76311878 76312214 -65959230 + MER45B DNA AcHobo 101 455 -585 255 171 21 142 chr9 76312215 76312329 -65959115 + MLT1D LTR MaLR 1 109 -414 1765 71 0 0 chr9 76312368 76312593 -65958851 - AluY SINE Alu 0 311 87 1456 234 46 8 chr9 76312603 76312975 -65958469 + MLT1D LTR MaLR 113 498 -7 2398 204 42 14 chr9 76312982 76313392 -65958052 + MER45B DNA AcHobo 452 849 -732 2301 120 8 17 chr9 76313392 76313750 -65957694 + THE1A LTR MaLR 1 355 0 11523 96 7 7 chr9 76313750 76315330 -65956114 + THE1A-int LTR MaLR 1 1580 0 2407 104 8 6 chr9 76315330 76315684 -65955760 + THE1A LTR MaLR 1 355 0 2398 204 42 14 chr9 76315684 76315840 -65955604 + MER45B DNA AcHobo 848 1036 -4 2105 142 6 0 chr9 76318258 76318569 -65952875 - AluSq SINE Alu 0 313 1 1346 162 14 5 chr9 76318569 76318776 -65952668 - AluJb SINE Alu -14 298 87 429 47 16 0 chr9 76318902 76318966 -65952478 - L1PA4 LINE L1 -2 6153 6089 332 277 59 28 chr9 76318977 76319549 -65951895 - L1MC4a LINE L1 -1736 6072 5439 372 279 149 14 chr9 76320384 76320592 -65950852 - MIR SINE MIR 0 262 27 441 287 47 16 chr9 76320831 76321089 -65950355 - L1ME4a LINE L1 -224 5897 5632 2109 148 3 0 chr9 76324236 76324546 -65946898 - AluSx SINE Alu -1 311 1 525 106 24 12 chr9 76324615 76324700 -65946744 + AluJ/FRAM SINE Alu 220 305 -7 21 36 0 0 chr9 76324739 76324767 -65946677 + AT_rich Low_complexity Low_complexity 1 28 0 217 75 94 19 chr9 76324920 76324973 -65946471 + (TATAA)n Simple_repeat Simple_repeat 2 58 0 791 208 10 35 chr9 76326658 76326855 -65944589 - L2 LINE L2 0 3313 3122 622 201 0 60 chr9 76327585 76327719 -65943725 + AluJo SINE Alu 79 204 -108 718 221 15 98 chr9 76328897 76329037 -65942407 + MER5A DNA MER1_type 3 122 -67 6089 195 23 20 chr9 76329037 76331238 -65940206 - L1PA15 LINE L1 0 6165 3956 718 221 15 98 chr9 76331238 76331301 -65940143 + MER5A DNA MER1_type 122 189 0 1937 171 0 0 chr9 76331356 76331655 -65939789 - AluJb SINE Alu -1 311 13 355 235 24 12 chr9 76331655 76331731 -65939713 - MER5A DNA MER1_type -101 88 9 476 301 50 116 chr9 76334528 76335003 -65936441 - L2 LINE L2 0 3272 2829 930 240 119 57 chr9 76335282 76335669 -65935775 + MLT1C LTR MaLR 51 461 -6 355 152 273 0 chr9 76336049 76336148 -65935296 - LTR54 LTR ERV1 0 510 385 1111 144 60 0 chr9 76336197 76336398 -65935046 - LTR54 LTR ERV1 -295 215 3 189 107 0 0 chr9 76336495 76336523 -65934921 + (TG)n Simple_repeat Simple_repeat 1 28 0 62 36 0 0 chr9 76336637 76336720 -65934724 + AT_rich Low_complexity Low_complexity 1 83 0 375 121 0 0 chr9 76337610 76337668 -65933776 + (TC)n Simple_repeat Simple_repeat 1 58 0 220 211 0 39 chr9 76338962 76339014 -65932430 + L2 LINE L2 3264 3313 0 268 243 213 73 chr9 76339732 76339855 -65931589 - L2 LINE L2 -36 3277 3132 2319 79 24 0 chr9 76339855 76340146 -65931298 + AluY SINE Alu 1 298 -13 268 243 213 73 chr9 76340146 76340158 -65931286 - L2 LINE L2 -181 3132 3123 207 0 0 0 chr9 76340160 76340183 -65931261 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1985 131 4 0 chr9 76340183 76340457 -65930987 - AluSx SINE Alu -33 279 5 1203 243 101 17 chr9 76340781 76341197 -65930247 + MER90 LTR ERV1 1 451 -163 856 116 27 0 chr9 76341198 76341345 -65930099 + CT-rich Low_complexity Low_complexity 1 151 0 1526 197 13 20 chr9 76341345 76341645 -65929799 - AluJo SINE Alu -14 298 1 512 206 122 0 chr9 76341645 76341776 -65929668 + MER90 LTR ERV1 468 614 0 198 0 0 0 chr9 76341840 76341862 -65929582 + (T)n Simple_repeat Simple_repeat 1 22 0 206 234 0 0 chr9 76341918 76341965 -65929479 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 271 274 48 81 chr9 76342185 76342309 -65929135 - MLT1K LTR MaLR -381 207 88 2227 146 38 10 chr9 76342782 76343180 -65928264 - LTR57 LTR ERVL -2 409 1 2404 123 83 5 chr9 76343185 76343582 -65927862 + MSTA LTR MaLR 1 428 0 255 301 185 17 chr9 76343648 76343821 -65927623 + L2 LINE L2 3112 3313 0 537 224 158 0 chr9 76344286 76344469 -65926975 - MER5C DNA MER1_type -44 280 69 6552 35 1 5 chr9 76346081 76346879 -65924565 + L1PA4 LINE L1 5361 6155 0 327 317 79 0 chr9 76346940 76347041 -65924403 - MIR3 SINE MIR -54 154 46 440 250 9 9 chr9 76347053 76347161 -65924283 + MIR3 SINE MIR 92 199 -9 2027 129 31 47 chr9 76347287 76347668 -65923776 - THE1C LTR MaLR 0 375 1 228 333 33 0 chr9 76347691 76347751 -65923693 - L2 LINE L2 -50 3222 3161 498 292 146 51 chr9 76347776 76348459 -65922985 - L2 LINE L2 0 3313 2483 2166 147 23 5 chr9 76348466 76348831 -65922613 + MLT1B LTR MaLR 1 444 -23 2713 88 13 8 chr9 76348831 76349204 -65922240 + THE1C LTR MaLR 1 375 0 2166 147 23 5 chr9 76349204 76349229 -65922215 + MLT1B LTR MaLR 444 467 0 860 328 121 30 chr9 76349278 76350081 -65921363 - L2 LINE L2 -921 2393 1518 2994 152 32 6 chr9 76350082 76350609 -65920835 + MER34 LTR ERV1 2 542 0 28 29 0 0 chr9 76350761 76350796 -65920648 + AT_rich Low_complexity Low_complexity 1 35 0 1018 271 88 45 chr9 76350916 76351426 -65920018 + L1MC4a LINE L1 5542 6091 -1717 2258 97 0 19 chr9 76351426 76351734 -65919710 - AluSg SINE Alu -3 307 6 1018 271 88 45 chr9 76351734 76351912 -65919532 + L1MC4a LINE L1 6091 6260 -1548 8869 199 17 8 chr9 76351943 76354638 -65916806 - L1PA15 LINE L1 -3 6162 3412 1904 217 13 3 chr9 76354651 76355025 -65916419 - MSTB LTR MaLR -48 378 1 621 189 0 15 chr9 76355089 76355221 -65916223 + MSTC LTR MaLR 1 130 -298 7222 50 0 3 chr9 76355226 76356293 -65915151 - L1PA5 LINE L1 0 6154 5088 6497 230 11 28 chr9 76356293 76357502 -65913942 - L1PA15 LINE L1 -2723 3423 2256 2597 123 87 32 chr9 76357502 76357973 -65913471 - LOR1a LTR ERV1 0 497 1 6497 230 11 28 chr9 76357973 76358639 -65912805 - L1PA15 LINE L1 -3890 2256 1580 635 296 78 18 chr9 76359389 76359673 -65911771 + L3 LINE CR1 1118 1418 -159 233 152 22 0 chr9 76359749 76359795 -65911649 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 2366 92 0 3 chr9 76359997 76360302 -65911142 + AluSx SINE Alu 1 304 -8 767 365 94 25 chr9 76360803 76361497 -65909947 - L2 LINE L2 -1847 1467 726 1901 269 54 29 chr9 76362416 76363045 -65908399 + MER115 DNA AcHobo 49 693 0 274 222 0 48 chr9 76363178 76363241 -65908203 + L2 LINE L2 3246 3305 -8 2284 88 3 3 chr9 76364173 76364467 -65906977 - AluSq SINE Alu -19 294 1 236 164 66 16 chr9 76364593 76364654 -65906790 - LTR67 LTR ERVL -8 549 486 3537 160 22 34 chr9 76365181 76365895 -65905549 - L1MA6 LINE L1 -8 6292 5587 357 293 150 16 chr9 76366201 76366427 -65905017 - MIR SINE MIR 0 262 2 186 357 116 9 chr9 76366490 76366602 -65904842 + L2 LINE L2 3123 3246 -26 24 0 0 0 chr9 76367328 76367352 -65904092 + AT_rich Low_complexity Low_complexity 1 24 0 324 374 16 37 chr9 76367418 76367608 -65903836 - MER5A DNA MER1_type -3 186 1 279 0 0 0 chr9 76367909 76367940 -65903504 + (TG)n Simple_repeat Simple_repeat 2 32 0 1103 113 6 0 chr9 76367988 76368156 -65903288 - MSTA LTR MaLR -259 169 1 896 314 48 56 chr9 76368772 76369234 -65902210 + L2 LINE L2 825 1282 -2032 239 385 68 0 chr9 76370435 76370583 -65900861 + L2 LINE L2 1275 1432 -1882 2060 136 14 70 chr9 76370777 76371218 -65900226 + MSTB1 LTR MaLR 1 416 -16 26 0 0 0 chr9 76371259 76371285 -65900159 + AT_rich Low_complexity Low_complexity 1 26 0 351 298 147 22 chr9 76371404 76371859 -65899585 - MLT1L LTR MaLR -13 602 37 424 235 0 0 chr9 76371946 76372027 -65899417 - L2 LINE L2 0 3313 3233 316 283 4 13 chr9 76372039 76372198 -65899246 - HAL1b LINE L1 -143 2364 819 1115 135 34 51 chr9 76372278 76372515 -65898929 - THE1C LTR MaLR 0 375 143 396 304 99 7 chr9 76373174 76373447 -65897997 + L1MC4 LINE L1 7215 7512 -530 251 345 118 43 chr9 76373872 76374194 -65897250 - L2 LINE L2 -56 3216 2871 1815 162 7 10 chr9 76374284 76374580 -65896864 + AluSx SINE Alu 1 295 -17 4065 193 11 21 chr9 76375120 76375762 -65895682 - L1PA13 LINE L1 -4538 2249 1617 3561 75 11 0 chr9 76375762 76376215 -65895229 - LTR22A LTR ERVK 0 458 1 4065 193 11 21 chr9 76376215 76376480 -65894964 - L1PA13 LINE L1 -5170 1617 1351 478 314 132 26 chr9 76376667 76376812 -65894632 + L1MC4a LINE L1 6448 6576 -1232 387 0 0 0 chr9 76376812 76376855 -65894589 + (CA)n Simple_repeat Simple_repeat 2 44 0 478 314 132 26 chr9 76376855 76377126 -65894318 + L1MC4a LINE L1 6576 6908 -900 656 231 106 26 chr9 76377246 76377558 -65893886 - HAL1 LINE L1 -1058 1449 1113 355 321 30 8 chr9 76377628 76377762 -65893682 + HAL1 LINE L1 744 880 -1627 2006 137 25 3 chr9 76377868 76378190 -65893254 + L1PA15 LINE L1 5831 6159 -6 621 115 0 0 chr9 76378663 76378750 -65892694 + AluSp/q SINE Alu 210 296 -17 1533 230 142 23 chr9 76379101 76379983 -65891461 - Charlie2 DNA MER1_type -16 2846 1860 685 230 167 16 chr9 76379994 76380251 -65891193 - Charlie2 DNA MER1_type -2540 322 27 833 203 22 22 chr9 76380802 76380984 -65890460 - LTR32 LTR ERVL -5 466 285 369 106 167 0 chr9 76380985 76381051 -65890393 - LTR32 LTR ERVL -383 88 12 268 250 35 62 chr9 76381047 76381191 -65890253 + MER112 DNA MER1_type 113 252 -8 * 30 27 0 0 chr9 76381218 76381255 -65890189 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr9 76382164 76382188 -65889256 + AT_rich Low_complexity Low_complexity 1 24 0 418 254 123 29 chr9 76382240 76382378 -65889066 + MER5B DNA MER1_type 28 178 0 517 225 174 0 chr9 76382389 76382544 -65888900 + MER5A DNA MER1_type 4 189 0 233 168 50 154 chr9 76382814 76383034 -65888410 - L1M4 LINE L1 -5509 1033 837 364 207 22 7 chr9 76383106 76383207 -65888237 - L1M4 LINE L1 -5746 900 611 2481 73 0 0 chr9 76383208 76383511 -65887933 - AluY SINE Alu -6 305 3 316 233 48 10 chr9 76383899 76384002 -65887442 - MLT1J2 LTR MaLR 0 450 344 484 246 3 72 chr9 76384139 76384345 -65887099 - MLT1J1 LTR MaLR -237 213 16 512 176 92 142 chr9 76384408 76384669 -65886775 - HsTC2 DNA Tc2 -32 1866 1619 2217 60 17 10 chr9 76384671 76384970 -65886474 - L1PA7 LINE L1 0 6154 5854 2276 155 8 0 chr9 76387808 76388170 -65883274 + MLT1A1 LTR MaLR 1 365 0 318 355 53 21 chr9 76388376 76388565 -65882879 + MIR SINE MIR 5 199 -63 280 296 70 7 chr9 76388666 76388808 -65882636 + MLT1K LTR MaLR 146 296 -292 2348 92 3 0 chr9 76389244 76389536 -65881908 - AluSx SINE Alu -19 293 1 263 346 45 39 chr9 76389621 76389777 -65881667 - MIR3 SINE MIR -42 166 10 2136 118 23 13 chr9 76390316 76390621 -65880823 - AluSg SINE Alu -2 308 1 283 267 0 0 chr9 76390855 76390930 -65880514 - HAL1 LINE L1 -359 2148 2074 2143 174 98 33 chr9 76391056 76391566 -65879878 + MER67A LTR ERV1 1 543 0 253 281 88 9 chr9 76391836 76391950 -65879494 - HAL1 LINE L1 -815 1692 1570 * 582 240 11 17 chr9 76391949 76392231 -65879213 + L1ME2 LINE L1 5189 5468 -696 13015 230 24 31 chr9 76392245 76398348 -65873096 + L1PA12 LINE L1 13 5761 -1823 2759 71 11 0 chr9 76398352 76398703 -65872741 - THE1A LTR MaLR 0 355 1 3164 84 5 0 chr9 76398703 76399143 -65872301 - THE1A-int LTR MaLR 0 1580 1139 1033 137 0 28 chr9 76399150 76399332 -65872112 + L1PA13 LINE L1 5985 6161 -2 1652 244 75 32 chr9 76399332 76399988 -65871456 + L1ME2 LINE L1 5481 6164 0 407 313 55 5 chr9 76400000 76400217 -65871227 - HAL1 LINE L1 -917 1590 1363 2111 174 35 22 chr9 76400309 76400763 -65870681 + MLT1C LTR MaLR 1 460 -7 23 54 0 0 chr9 76403333 76403370 -65868074 + AT_rich Low_complexity Low_complexity 1 37 0 1658 148 4 7 chr9 76403663 76403940 -65867504 + L1PB3 LINE L1 5879 6154 0 664 260 45 45 chr9 76404305 76404528 -65866916 + MIR SINE MIR 8 230 -32 1283 107 130 23 chr9 76404666 76404881 -65866563 + AluJb SINE Alu 73 310 -2 928 271 38 23 chr9 76406562 76406828 -65864616 + LTR33 LTR ERVL 1 270 -251 385 343 211 25 chr9 76406848 76407986 -65863458 - L2 LINE L2 -1766 1548 200 930 188 0 22 chr9 76408225 76408448 -65862996 - Charlie1a DNA MER1_type 0 1455 1238 1104 179 179 22 chr9 76408452 76408816 -65862628 + LTR37A LTR ERV1 6 426 0 6101 170 52 7 chr9 76408816 76409998 -65861446 - Charlie1a DNA MER1_type -214 1241 7 269 376 74 0 chr9 76410165 76410314 -65861130 - L2 LINE L2 -167 3105 2946 509 351 92 47 chr9 76410354 76411095 -65860349 - L2 LINE L2 -999 2315 1522 2028 145 7 0 chr9 76411095 76411399 -65860045 + AluSx SINE Alu 1 306 -6 509 351 92 47 chr9 76411399 76411581 -65859863 - L2 LINE L2 -1792 1522 1350 215 321 46 30 chr9 76413022 76413153 -65858291 - L2 LINE L2 -218 3054 2922 209 245 128 32 chr9 76413925 76414019 -65857425 + MIR SINE MIR 38 140 -68 272 311 14 14 chr9 76414750 76414824 -65856620 + MIR3 SINE MIR 89 162 -46 1184 258 3 32 chr9 76414900 76415214 -65856230 + L1ME1 LINE L1 5847 6151 -15 192 200 40 93 chr9 76415240 76415315 -65856129 + MER5A DNA MER1_type 119 189 0 2085 136 3 3 chr9 76415767 76416076 -65855368 - AluSx SINE Alu -3 309 1 225 287 7 14 chr9 76416695 76416787 -65854657 + CT-rich Low_complexity Low_complexity 1 91 0 242 318 35 82 chr9 76416831 76417001 -65854443 - L2 LINE L2 -57 3215 3054 315 203 0 16 chr9 76417017 76417081 -65854363 + MER20 DNA MER1_type 1 63 -156 853 323 38 43 chr9 76417097 76417469 -65853975 - LTR16B LTR ERVL -94 370 1 253 214 0 0 chr9 76417756 76417812 -65853632 + (CA)n Simple_repeat Simple_repeat 1 56 0 342 0 0 0 chr9 76418515 76418553 -65852891 + (TG)n Simple_repeat Simple_repeat 1 38 0 30 0 0 0 chr9 76419550 76419580 -65851864 + AT_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chr9 76419584 76419610 -65851834 + (CA)n Simple_repeat Simple_repeat 2 27 0 206 186 23 0 chr9 76420310 76420353 -65851091 + (TTA)n Simple_repeat Simple_repeat 1 44 0 800 133 102 6 chr9 76421721 76421887 -65849557 + MER53 DNA DNA 1 182 -7 939 172 0 13 chr9 76422027 76422184 -65849260 - FRAM SINE Alu -11 155 1 207 188 0 42 chr9 76423059 76423107 -65848337 + (TAA)n Simple_repeat Simple_repeat 2 47 0 54 91 0 0 chr9 76423686 76423752 -65847692 + AT_rich Low_complexity Low_complexity 1 66 0 1050 188 83 113 chr9 76423768 76424130 -65847314 + MLT1A1 LTR MaLR 15 365 0 1097 307 37 15 chr9 76425164 76425574 -65845870 + LTR16A LTR ERVL 26 444 -6 223 178 0 0 chr9 76425797 76425842 -65845602 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 754 187 35 29 chr9 76425912 76426083 -65845361 - MLT1E LTR MaLR -421 172 1 3931 216 13 37 chr9 76426192 76426651 -65844793 - MER45B DNA AcHobo -192 848 379 2129 119 3 0 chr9 76426651 76426944 -65844500 - AluSx SINE Alu -18 294 1 3931 216 13 37 chr9 76426944 76427215 -65844229 - MER45B DNA AcHobo -661 379 140 2315 169 24 21 chr9 76427215 76427413 -65844031 + MSTB LTR MaLR 1 197 -229 2187 106 0 13 chr9 76427413 76427715 -65843729 + AluSq SINE Alu 1 298 -15 2315 169 24 21 chr9 76427715 76427941 -65843503 + MSTB LTR MaLR 197 426 0 3931 216 13 37 chr9 76427941 76428078 -65843366 - MER45B DNA AcHobo -900 140 1 557 241 25 43 chr9 76428078 76428227 -65843217 + MLT1F LTR MaLR 342 487 -55 4126 158 17 9 chr9 76428334 76429098 -65842346 + L1MB8 LINE L1 5409 6178 0 14499 142 13 13 chr9 76430042 76432459 -65838985 + Tigger1 DNA MER2_type 1 2418 0 250 260 62 10 chr9 76432729 76432825 -65838619 + L2 LINE L2 3158 3258 -14 292 324 39 29 chr9 76434116 76434218 -65837226 + MIR3 SINE MIR 85 187 -21 584 286 70 5 chr9 76434301 76434486 -65836958 + MIR SINE MIR 8 204 -58 200 299 30 60 chr9 76434590 76434657 -65836787 - L2 LINE L2 -81 3191 3127 269 240 40 0 chr9 76436194 76436269 -65835175 + MIR SINE MIR 185 262 0 423 330 63 0 chr9 76436552 76436706 -65834738 - MIR SINE MIR -64 144 30 1915 58 0 0 chr9 76438908 76439148 -65832296 + L1PA6 LINE L1 5912 6151 -3 209 343 41 0 chr9 76440076 76440149 -65831295 - MIR SINE MIR -158 104 29 729 254 11 6 chr9 76440811 76440988 -65830456 - LTR16C LTR ERVL 0 491 314 232 174 0 0 chr9 76441021 76441067 -65830377 + MER5C DNA MER1_type 80 125 -199 216 164 229 0 chr9 76441086 76441147 -65830297 + MER5C DNA MER1_type 226 300 -24 6976 200 47 19 chr9 76441157 76441384 -65830060 - L1 LINE L1 -1014 5132 4913 1443 189 7 11 chr9 76441384 76441684 -65829760 - AluJo SINE Alu 0 302 4 6976 200 47 19 chr9 76441684 76443081 -65828363 - L1 LINE L1 -1233 4913 3461 6763 147 111 19 chr9 76443080 76444339 -65827105 + L1MC1 LINE L1 913 2326 -4100 * 1721 184 6 16 chr9 76444339 76444654 -65826790 + AluJo SINE Alu 1 312 0 6763 147 111 19 chr9 76444654 76444874 -65826570 + L1MC1 LINE L1 2326 2524 -3902 434 229 0 10 chr9 76444895 76444991 -65826453 + U13 snRNA snRNA 1 95 -9 10205 225 21 22 chr9 76445013 76448745 -65822699 + L1MC1 LINE L1 2552 6279 -334 3015 239 67 56 chr9 76448779 76449130 -65822314 + L1ME LINE L1 3338 3684 -2462 185 0 0 39 chr9 76449130 76449156 -65822288 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3015 239 67 56 chr9 76449156 76450054 -65821390 + L1ME LINE L1 3684 4601 -1545 2344 181 62 42 chr9 76450058 76450556 -65820888 + MLT2B2 LTR ERVL 1 508 -7 2458 227 34 21 chr9 76450556 76450669 -65820775 + L1ME LINE L1 4600 4710 -1456 2086 132 18 34 chr9 76450669 76451049 -65820395 - THE1C LTR MaLR 0 375 2 2458 227 34 21 chr9 76451049 76452055 -65819389 + L1ME LINE L1 4710 5725 -441 1050 248 48 13 chr9 76452061 76452376 -65819068 + L1MCc LINE L1 20 345 -6078 622 274 65 12 chr9 76452821 76452989 -65818455 - MER5B DNA MER1_type -1 177 1 655 291 10 68 chr9 76454720 76455016 -65816428 + L2 LINE L2 2188 2466 -848 603 293 207 21 chr9 76454989 76455327 -65816117 + L2 LINE L2 2912 3312 -1 * 1057 250 133 60 chr9 76455761 76456136 -65815308 - HAL1b LINE L1 -4 1344 998 459 35 0 0 chr9 76456136 76456193 -65815251 + (TG)n Simple_repeat Simple_repeat 2 58 0 1057 250 133 60 chr9 76456193 76456705 -65814739 - HAL1b LINE L1 -350 998 392 2582 163 19 46 chr9 76456742 76457281 -65814163 - L1MC1 LINE L1 -8 6325 5802 324 276 63 20 chr9 76457597 76457846 -65813598 - L1ME3A LINE L1 -202 5968 5666 307 53 0 0 chr9 76457851 76457889 -65813555 - MLT1A2 LTR MaLR -67 307 270 691 319 59 9 chr9 76457889 76458397 -65813047 - L1ME3A LINE L1 -520 5642 5108 757 223 43 5 chr9 76458398 76458571 -65812873 + MLT1A1 LTR MaLR 1 180 -185 1437 208 79 117 chr9 76458571 76459346 -65812098 + LTR1B LTR ERV1 1 745 -81 429 289 8 8 chr9 76459428 76459549 -65811895 + LTR28 LTR ERV1 900 1020 0 9256 183 33 44 chr9 76459649 76462818 -65808626 + HUERS-P2 LTR ERV1 75 3075 -13 1502 212 85 120 chr9 76462818 76463803 -65807641 + LTR1B LTR ERV1 1 1019 -1 1093 140 32 16 chr9 76463803 76463986 -65807458 + MLT1A1 LTR MaLR 178 363 -2 961 287 108 25 chr9 76464000 76465260 -65806184 - L1ME3A LINE L1 -1053 5093 3713 26 30 0 0 chr9 76466847 76466880 -65804564 + AT_rich Low_complexity Low_complexity 1 33 0 1874 247 13 17 chr9 76467610 76468087 -65803357 - MLT1F LTR MaLR 0 542 68 426 253 0 0 chr9 76468640 76468727 -65802717 - MIR3 SINE MIR -47 161 75 2378 92 3 16 chr9 76470244 76470560 -65800884 + AluSx SINE Alu 1 312 0 284 323 73 0 chr9 76470922 76471018 -65800426 + MIR SINE MIR 28 130 -132 1778 155 45 0 chr9 76472196 76472486 -65798958 - MER1B DNA MER1_type 0 339 37 226 244 233 0 chr9 76472693 76472779 -65798665 + HsTC2 DNA Tc2 36 141 -1757 * 1282 224 43 30 chr9 76472778 76473215 -65798229 + HsTC2 DNA Tc2 1282 1900 0 30 45 0 0 chr9 76475252 76475296 -65796148 + AT_rich Low_complexity Low_complexity 1 44 0 204 40 0 0 chr9 76475699 76475724 -65795720 + (TTA)n Simple_repeat Simple_repeat 3 27 0 20393 28 2 0 chr9 76475724 76478916 -65792528 - L1PA4 LINE L1 -18 6137 2937 210 143 0 0 chr9 76479300 76479335 -65792109 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 277 299 0 93 chr9 76480016 76480123 -65791321 - L2 LINE L2 -5 3308 3212 3558 7 12 2 chr9 76480249 76480658 -65790786 - L1PA3 LINE L1 -1 6154 5742 2176 12 0 0 chr9 76480659 76480911 -65790533 + L1PA3 LINE L1 5491 5742 -413 322 243 17 6 chr9 76481548 76481735 -65789709 + GA-rich Low_complexity Low_complexity 1 189 0 2350 98 0 3 chr9 76484806 76485103 -65786341 + AluSg SINE Alu 1 296 -14 455 321 49 11 chr9 76485103 76485287 -65786157 - MLT1J LTR MaLR -116 395 205 616 308 41 34 chr9 76485299 76485415 -65786029 - LTR33 LTR ERVL -22 499 385 4017 111 53 2 chr9 76485415 76486018 -65785426 - MER41B LTR ERV1 -1 634 1 616 308 41 34 chr9 76486018 76486193 -65785251 - LTR33 LTR ERVL -136 385 206 2576 101 28 8 chr9 76486339 76486696 -65784748 - THE1B LTR MaLR 0 364 1 448 316 13 19 chr9 76486696 76486854 -65784590 - LTR33 LTR ERVL -347 174 18 1886 176 3 0 chr9 76489076 76489377 -65782067 + AluSx SINE Alu 1 302 -10 195 146 0 0 chr9 76489928 76489969 -65781475 + (T)n Simple_repeat Simple_repeat 1 41 0 225 94 0 0 chr9 76490064 76490096 -65781348 + (TTA)n Simple_repeat Simple_repeat 1 32 0 597 215 174 0 chr9 76490146 76490295 -65781149 + MER5A DNA MER1_type 9 183 -6 1548 117 35 0 chr9 76491314 76491570 -65779874 - L1MA5A LINE L1 -7 6290 6026 23 0 0 0 chr9 76492087 76492110 -65779334 + AT_rich Low_complexity Low_complexity 1 23 0 271 320 84 17 chr9 76492542 76492720 -65778724 - LTR33 LTR ERVL 0 521 332 1257 241 63 29 chr9 76494332 76494776 -65776668 - MLT1C LTR MaLR -3 464 6 296 286 124 68 chr9 76496117 76496278 -65775166 + MIR3 SINE MIR 38 207 -1 265 256 22 54 chr9 76496385 76496504 -65774940 - MIR SINE MIR -61 147 37 295 202 76 34 chr9 76496622 76496741 -65774703 - L1ME1 LINE L1 -6 6160 6037 41924 38 3 2 chr9 76496838 76502985 -65768459 - L1PA3 LINE L1 -2 6153 7 1566 177 34 21 chr9 76503066 76503347 -65768097 + LTR24 LTR ERV1 1 288 -179 2002 123 0 52 chr9 76503347 76503657 -65767787 + AluSx SINE Alu 1 294 -18 1566 177 34 21 chr9 76503657 76503703 -65767741 + LTR24 LTR ERV1 288 332 -135 890 168 9 56 chr9 76504094 76504308 -65767136 - MER3 DNA MER1_type -5 204 1 751 179 39 0 chr9 76504957 76505113 -65766331 + LTR24 LTR ERV1 306 467 0 2760 238 80 37 chr9 76505120 76505772 -65765672 - L1MEc LINE L1 -5312 1084 373 635 75 11 0 chr9 76505772 76505866 -65765578 + (TC)n Simple_repeat Simple_repeat 2 96 0 2760 238 80 37 chr9 76505866 76506214 -65765230 - L1MEc LINE L1 -6023 373 41 315 331 13 32 chr9 76506712 76506869 -65764575 + L1MC/D LINE L1 5 158 -5961 305 286 53 45 chr9 76507093 76507226 -65764218 + L1MC/D LINE L1 425 558 -5561 601 303 101 27 chr9 76507235 76507641 -65763803 + L1MC/D LINE L1 5324 5759 -2032 466 265 69 38 chr9 76507614 76508007 -65763437 + L1MEd LINE L1 2125 2529 -3600 * 789 285 54 14 chr9 76508117 76508394 -65763050 + MLT1J LTR MaLR 81 368 -143 471 264 72 34 chr9 76509886 76510151 -65761293 + L1ME3A LINE L1 5674 5948 -222 1129 248 99 53 chr9 76510208 76510701 -65760743 + MLT2B1 LTR ERVL 5 520 0 293 250 60 35 chr9 76511766 76511882 -65759562 - MIR SINE MIR -12 250 132 23 54 0 0 chr9 76513035 76513072 -65758372 + AT_rich Low_complexity Low_complexity 1 37 0 354 156 0 0 chr9 76513274 76513338 -65758106 + (CA)n Simple_repeat Simple_repeat 2 65 0 249 218 230 23 chr9 76514833 76514920 -65756524 - MIR3 SINE MIR -8 200 96 1208 199 135 18 chr9 76514967 76515294 -65756150 - MLT1A1 LTR MaLR 0 365 1 233 133 0 67 chr9 76515491 76515551 -65755893 - L1MC4 LINE L1 -1339 6703 6648 1026 65 0 0 chr9 76515574 76515713 -65755731 + (TC)n Simple_repeat Simple_repeat 2 140 0 484 261 30 37 chr9 76515713 76515847 -65755597 - MIR SINE MIR -124 138 6 512 279 79 30 chr9 76516177 76516647 -65754797 + L1MEd LINE L1 978 1470 -4946 364 310 57 16 chr9 76517250 76517503 -65753941 + L1MEd LINE L1 2331 2597 -3829 386 190 169 14 chr9 76517785 76517927 -65753517 - L1M4 LINE L1 -3135 3011 2848 285 172 35 17 chr9 76517976 76518034 -65753410 - L2 LINE L2 -68 3245 3187 302 301 46 7 chr9 76518164 76518317 -65753127 - MER103 DNA DNA 0 166 8 487 292 128 5 chr9 76518448 76518667 -65752777 + LTR16C LTR ERVL 150 395 -96 332 132 91 8 chr9 76518966 76519087 -65752357 + (TA)n Simple_repeat Simple_repeat 1 131 0 578 63 13 0 chr9 76519537 76519616 -65751828 - MADE1 DNA Mariner 0 80 1 2283 106 20 0 chr9 76519667 76519970 -65751474 + AluSx SINE Alu 1 309 -3 420 299 49 62 chr9 76521518 76521742 -65749702 + MIR SINE MIR 7 227 -35 549 317 75 10 chr9 76522021 76522314 -65749130 + MLT1I LTR MaLR 98 409 0 853 169 0 19 chr9 76522920 76523080 -65748364 - L1PA10 LINE L1 -2 6166 6010 737 173 0 43 chr9 76523496 76523635 -65747809 - MER44D DNA MER2_type -206 403 1 184 205 0 0 chr9 76523638 76523677 -65747767 + L2 LINE L2 3275 3313 0 253 230 108 0 chr9 76523818 76523892 -65747552 - MER96 DNA MER1_type? -92 83 2 200 132 0 26 chr9 76524242 76524280 -65747164 + (CAATT)n Simple_repeat Simple_repeat 4 40 0 494 345 78 4 chr9 76525501 76525733 -65745711 + MIR SINE MIR 14 262 0 495 211 83 0 chr9 76525826 76525959 -65745485 - LTR16C LTR ERVL -3 488 345 1130 201 207 11 chr9 76525973 76526331 -65745113 - MER63B DNA MER1_type -8 428 1 1228 244 14 11 chr9 76526605 76526958 -65744486 - L1MD3 LINE L1 -3 7992 7639 761 148 45 45 chr9 76526945 76527008 -65744436 + L1MC4a LINE L1 7210 7272 -536 * 1864 211 50 45 chr9 76527008 76527525 -65743919 + MLT2B1 LTR ERVL 1 520 0 761 148 45 45 chr9 76527525 76527637 -65743807 + L1MC4a LINE L1 7271 7385 -423 21 36 0 0 chr9 76527643 76527671 -65743773 + AT_rich Low_complexity Low_complexity 1 28 0 792 42 0 0 chr9 76527671 76527767 -65743677 - L1PA5 LINE L1 -7 6147 6052 1214 32 13 0 chr9 76527767 76527922 -65743522 + L1PA5 LINE L1 5703 5859 -295 1003 236 31 84 chr9 76528784 76528911 -65742533 - L1MC5 LINE L1 -893 6915 6783 2157 129 10 0 chr9 76528911 76529205 -65742239 - AluSx SINE Alu -15 297 1 1003 236 31 84 chr9 76529205 76529636 -65741808 - L1MC5 LINE L1 -1025 6783 6476 213 258 0 0 chr9 76529739 76529805 -65741639 + (TATATG)n Simple_repeat Simple_repeat 2 67 0 215 136 45 0 chr9 76529847 76529891 -65741553 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr9 76529996 76530017 -65741427 + AT_rich Low_complexity Low_complexity 1 21 0 188 425 19 0 chr9 76530406 76530512 -65740932 + L2 LINE L2 3097 3204 -68 386 354 163 30 chr9 76531015 76531542 -65739902 + L2 LINE L2 2431 3026 -246 342 363 40 0 chr9 76531634 76531758 -65739686 + L2 LINE L2 3185 3313 0 280 263 29 66 chr9 76532586 76532723 -65738721 + MIR3 SINE MIR 12 143 -65 2579 81 5 86 chr9 76532988 76533059 -65738385 - THE1C LTR MaLR 0 375 300 1996 131 3 37 chr9 76533059 76533356 -65738088 - AluSq SINE Alu -26 287 1 2579 81 5 86 chr9 76533356 76533692 -65737752 - THE1C LTR MaLR -75 300 1 30 45 0 0 chr9 76534186 76534230 -65737214 + AT_rich Low_complexity Low_complexity 1 44 0 435 318 39 13 chr9 76534277 76534431 -65737013 + MIR SINE MIR 2 159 -103 419 271 0 19 chr9 76535138 76535245 -65736199 + MIR SINE MIR 110 214 -48 202 339 0 0 chr9 76535482 76535538 -65735906 + L2 LINE L2 3208 3263 -9 483 222 0 0 chr9 76539004 76539094 -65732350 + MER58 DNA MER1_type 1 90 -125 736 239 0 41 chr9 76539116 76539334 -65732110 + L1MB8 LINE L1 1 209 -6650 1206 108 0 0 chr9 76539334 76539491 -65731953 - AluSx SINE Alu -155 157 1 2111 223 51 40 chr9 76539492 76540148 -65731296 + L1MB8 LINE L1 388 1078 -5781 1742 218 48 48 chr9 76540151 76540501 -65730943 + L1MB8 LINE L1 3213 3565 -3392 13486 38 23 0 chr9 76540501 76542892 -65728552 + L1PA5 LINE L1 3728 6143 -11 1742 218 48 48 chr9 76542892 76543165 -65728279 + L1MB8 LINE L1 3564 3836 -3121 330 200 0 0 chr9 76543195 76543260 -65728184 + Tigger5 DNA MER2_type 2259 2323 0 7266 101 3 1 chr9 76543299 76544338 -65727106 + THE1A-int LTR MaLR 540 1580 0 1866 101 18 0 chr9 76544338 76544616 -65726828 + THE1A LTR MaLR 1 283 -72 2652 234 88 29 chr9 76544629 76544736 -65726708 + L1MB8 LINE L1 4057 4156 -2801 1946 141 11 3 chr9 76544736 76545019 -65726425 + AluSx SINE Alu 10 294 -18 2652 234 88 29 chr9 76545019 76545939 -65725505 + L1MB8 LINE L1 4156 5145 -1812 2324 161 68 31 chr9 76545961 76546503 -65724941 - L1MA8 LINE L1 -12 6279 5718 3748 195 40 29 chr9 76546520 76548347 -65723097 + L1MB8 LINE L1 5137 6984 -5 286 235 0 0 chr9 76548410 76548478 -65722966 + MER58A DNA MER1_type 155 222 -2 1794 93 8 4 chr9 76549065 76549327 -65722117 - AluSx SINE Alu 0 307 45 1127 43 0 0 chr9 76550436 76550575 -65720869 - L1PA4 LINE L1 0 6155 6017 260 361 7 14 chr9 76550698 76550842 -65720602 - MIR3 SINE MIR -63 145 3 722 201 150 48 chr9 76551130 76551424 -65720020 - MER33 DNA MER1_type 0 324 1 1269 254 80 19 chr9 76551761 76552186 -65719258 - L1ME3A LINE L1 -41 6129 5679 1097 231 121 38 chr9 76552273 76552693 -65718751 + MLT1D LTR MaLR 6 460 -45 2023 108 7 7 chr9 76552696 76552983 -65718461 + AluSc SINE Alu 1 287 -22 21 0 0 0 chr9 76553131 76553152 -65718292 + AT_rich Low_complexity Low_complexity 1 21 0 900 216 48 0 chr9 76553186 76553353 -65718091 + FRAM SINE Alu 1 172 -4 4069 158 69 7 chr9 76553566 76554406 -65717038 - L1MB4 LINE L1 0 6180 5289 22 0 0 0 chr9 76554981 76555003 -65716441 + AT_rich Low_complexity Low_complexity 1 22 0 14970 41 4 0 chr9 76555003 76557594 -65713850 - L1PA5 LINE L1 -7 6147 3550 9389 50 5 0 chr9 76557694 76558952 -65712492 - L1P LINE L1 -1946 4200 2937 4627 115 1 0 chr9 76558989 76559693 -65711751 - L1P LINE L1 -5441 705 1 490 158 8 83 chr9 76559951 76560084 -65711360 + MLT1C LTR MaLR 1 123 -344 1387 167 20 29 chr9 76560084 76560329 -65711115 + AluJb SINE Alu 1 243 -69 1061 204 78 78 chr9 76560344 76560701 -65710743 + MLT1C LTR MaLR 111 467 0 269 211 4 56 chr9 76560941 76561049 -65710395 + L1MC3 LINE L1 7700 7785 0 1388 153 3 53 chr9 76562277 76562598 -65708846 + AluY SINE Alu 1 305 -6 459 0 0 0 chr9 76562598 76562649 -65708795 + (TA)n Simple_repeat Simple_repeat 2 52 0 304 184 36 49 chr9 76563613 76563703 -65707741 + MIR3 SINE MIR 103 190 -18 752 180 27 0 chr9 76564220 76564370 -65707074 + MLT1D LTR MaLR 1 154 -351 760 181 140 5 chr9 76564394 76564587 -65706857 + MLT1D LTR MaLR 284 502 -3 1877 101 112 8 chr9 76564590 76564857 -65706587 - AluSg SINE Alu -15 295 1 711 227 52 13 chr9 76564926 76565080 -65706364 - FRAM SINE Alu -17 159 1 1671 210 0 56 chr9 76565248 76565644 -65705800 - MLT1A2 LTR MaLR 0 374 1 196 197 16 16 chr9 76565950 76566011 -65705433 + (TA)n Simple_repeat Simple_repeat 1 61 0 211 247 13 52 chr9 76566097 76566174 -65705270 - MIR SINE MIR -70 192 119 738 198 91 30 chr9 76566242 76566439 -65705005 - MER3 DNA MER1_type 0 209 1 330 291 45 9 chr9 76567028 76567138 -65704306 - L2 LINE L2 -1 3312 3199 183 354 10 10 chr9 76567171 76567270 -65704174 - MIR SINE MIR 0 262 164 377 314 70 70 chr9 76568057 76568430 -65703014 + L3 LINE CR1 676 1048 -529 489 243 121 75 chr9 76568508 76568813 -65702631 + MLT2E LTR ERVL 1 319 -309 299 211 135 0 chr9 76568925 76569029 -65702415 + MLT2E LTR ERVL 505 622 -6 234 0 0 0 chr9 76569068 76569094 -65702350 + (TA)n Simple_repeat Simple_repeat 2 27 0 2361 121 0 0 chr9 76569094 76569400 -65702044 - AluSx SINE Alu -6 306 1 652 320 22 4 chr9 76569433 76569661 -65701783 - MIR SINE MIR -20 242 11 221 345 146 27 chr9 76569661 76569922 -65701522 + L3 LINE CR1 1132 1423 -154 983 329 94 50 chr9 76570006 76571224 -65700220 - L2 LINE L2 -1 3271 1996 2344 106 0 0 chr9 76571242 76571543 -65699901 + AluSp SINE Alu 3 303 -10 181 299 119 0 chr9 76571762 76571829 -65699615 - MIR SINE MIR -123 139 65 27 0 0 0 chr9 76572016 76572043 -65699401 + AT_rich Low_complexity Low_complexity 1 27 0 2293 112 0 0 chr9 76572065 76572370 -65699074 + AluSg SINE Alu 1 305 -5 1877 128 57 11 chr9 76572394 76572676 -65698768 + AluSx SINE Alu 1 295 -17 40 21 0 0 chr9 76573534 76573581 -65697863 + AT_rich Low_complexity Low_complexity 1 47 0 1099 229 14 0 chr9 76573815 76574033 -65697411 - MER58A DNA MER1_type 0 224 4 370 62 0 0 chr9 76574298 76574346 -65697098 + MER58A DNA MER1_type 177 224 0 198 71 0 0 chr9 76574425 76574453 -65696991 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 284 244 67 33 chr9 76574525 76574615 -65696829 + L2 LINE L2 3180 3272 0 4702 229 100 56 chr9 76575233 76575658 -65695786 + Charlie2a DNA MER1_type 35 440 -2422 2532 59 7 0 chr9 76575658 76575964 -65695480 - AluY SINE Alu -3 308 1 4702 229 100 56 chr9 76575964 76578026 -65693418 + Charlie2a DNA MER1_type 440 2668 -194 1302 208 87 95 chr9 76578149 76578916 -65692528 - HAL1 LINE L1 -867 1640 878 1276 194 25 9 chr9 76578916 76579231 -65692213 + MER33 DNA MER1_type 5 324 0 1302 208 87 95 chr9 76579231 76579275 -65692169 - HAL1 LINE L1 -1629 878 835 2588 181 5 39 chr9 76579280 76579331 -65692113 - L1MB7 LINE L1 -8 6176 6125 1663 159 74 0 chr9 76579331 76579601 -65691843 + AluSx SINE Alu 1 290 -22 2588 181 5 39 chr9 76579601 76580112 -65691332 - L1MB7 LINE L1 -59 6125 5633 1437 276 119 23 chr9 76580204 76580415 -65691029 - HAL1 LINE L1 -1798 709 520 2509 114 19 6 chr9 76580415 76580774 -65690670 + THE1B LTR MaLR 1 364 0 1437 276 119 23 chr9 76580774 76581207 -65690237 - HAL1 LINE L1 -1987 520 3 381 303 33 8 chr9 76581361 76581483 -65689961 + L2 LINE L2 3138 3262 -10 481 170 0 0 chr9 76582096 76582190 -65689254 + MER51A LTR ERV1 1 205 -435 288 224 0 0 chr9 76582214 76582272 -65689172 + MER51A LTR ERV1 323 380 -260 849 187 106 63 chr9 76582355 76582620 -65688824 + MER51A LTR ERV1 341 618 -16 21 0 0 0 chr9 76583941 76583962 -65687482 + AT_rich Low_complexity Low_complexity 1 21 0 461 291 27 7 chr9 76584626 76584774 -65686670 + MIR SINE MIR 63 213 -49 245 320 13 0 chr9 76584873 76584951 -65686493 + L2 LINE L2 3186 3264 -8 24 0 0 0 chr9 76585202 76585226 -65686218 + AT_rich Low_complexity Low_complexity 1 24 0 402 271 129 19 chr9 76585596 76585806 -65685638 - L2 LINE L2 0 3313 3081 1195 315 96 14 chr9 76585870 76586442 -65685002 - L2 LINE L2 -368 2946 2328 4634 118 53 63 chr9 76586662 76592703 -65678741 + L1PA7 LINE L1 12 6154 0 21 0 0 0 chr9 76593170 76593191 -65678253 + AT_rich Low_complexity Low_complexity 1 21 0 1844 159 32 6 chr9 76593407 76593747 -65677697 + MLT1A1 LTR MaLR 1 349 -16 249 316 39 47 chr9 76594220 76594584 -65676860 - HAL1b LINE L1 -924 424 64 25 31 0 0 chr9 76594621 76594653 -65676791 + AT_rich Low_complexity Low_complexity 1 32 0 275 123 35 0 chr9 76594842 76594899 -65676545 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 1119 173 150 42 chr9 76596223 76596536 -65674908 + MER7A DNA MER2_type 1 345 -1 195 186 0 0 chr9 76596712 76596755 -65674689 + (TAA)n Simple_repeat Simple_repeat 3 45 0 780 172 17 138 chr9 76596792 76597024 -65674420 + MLT1E1 LTR MaLR 4 207 -447 4535 259 86 25 chr9 76597052 76598982 -65672462 - L1M4c LINE L1 -4596 2050 2 2564 55 0 3 chr9 76599387 76599698 -65671746 + AluY SINE Alu 1 310 -1 2408 65 0 7 chr9 76599735 76600041 -65671403 + AluY SINE Alu 1 304 -7 414 242 102 90 chr9 76600041 76600292 -65671152 - L1MC5 LINE L1 -71 7890 7637 213 225 0 0 chr9 76600387 76600427 -65671017 + L3 LINE CR1 1385 1424 -153 406 307 124 23 chr9 76600539 76600757 -65670687 - L1MC5 LINE L1 -37 7924 7685 2524 58 0 3 chr9 76601241 76601551 -65669893 - AluY SINE Alu -2 309 1 234 171 79 53 chr9 76602203 76602279 -65669165 + MLT1K LTR MaLR 511 588 0 559 292 111 26 chr9 76603207 76603433 -65668011 - MIR SINE MIR -12 250 6 188 275 77 22 chr9 76603460 76603551 -65667893 - MIR SINE MIR -54 208 113 369 257 42 69 chr9 76603574 76603835 -65667609 - L1MEc LINE L1 -4949 1447 1194 204 258 0 106 chr9 76604151 76604217 -65667227 - L2 LINE L2 -9 3263 3205 670 232 36 18 chr9 76604714 76604882 -65666562 + MIR SINE MIR 82 252 -10 1053 200 33 5 chr9 76605010 76605225 -65666219 + MER82 DNA MER2_type 1 221 -432 234 179 30 15 chr9 76605275 76605342 -65666102 + (TA)n Simple_repeat Simple_repeat 2 69 0 1990 196 56 20 chr9 76605342 76605750 -65665694 + MER82 DNA MER2_type 231 653 0 348 187 154 22 chr9 76605920 76606011 -65665433 + MER103 DNA DNA 48 150 -16 546 16 0 0 chr9 76606811 76606874 -65664570 + (GA)n Simple_repeat Simple_repeat 1 63 0 461 330 21 46 chr9 76606895 76607041 -65664403 + MIR SINE MIR 23 162 -100 311 295 59 91 chr9 76607041 76607566 -65663878 - MLT1J LTR MaLR -3 508 1 461 330 21 46 chr9 76607566 76607658 -65663786 + MIR SINE MIR 162 255 -7 2179 114 3 3 chr9 76607814 76608113 -65663331 - AluSg SINE Alu -11 299 1 2119 105 7 26 chr9 76608384 76608689 -65662755 - AluSq SINE Alu -14 299 1 206 359 30 42 chr9 76608988 76609155 -65662289 - L2 LINE L2 0 3272 3108 202 214 0 0 chr9 76609640 76609682 -65661762 - MIR3 SINE MIR 0 208 167 537 114 0 0 chr9 76610900 76610988 -65660456 - AluS SINE Alu -1 308 221 306 176 0 0 chr9 76611242 76611293 -65660151 - L2 LINE L2 0 3272 3222 294 95 0 0 chr9 76611293 76611335 -65660109 + (CA)n Simple_repeat Simple_repeat 2 43 0 834 301 38 18 chr9 76611365 76611858 -65659586 - MLT2E LTR ERVL -76 552 2 225 363 105 8 chr9 76612286 76612410 -65659034 - L2 LINE L2 -1 3271 3136 632 264 33 47 chr9 76612554 76612766 -65658678 + MIR SINE MIR 28 236 -26 4972 105 7 1 chr9 76612804 76613535 -65657909 + L1MA1 LINE L1 5558 6292 -10 1746 180 51 51 chr9 76614117 76614511 -65656933 + MSTD LTR MaLR 3 396 0 1585 276 106 53 chr9 76614768 76615080 -65656364 + L1ME3 LINE L1 2897 3191 -2955 1923 136 4 0 chr9 76615080 76615352 -65656092 + AluSg SINE Alu 22 294 -16 1585 276 106 53 chr9 76615352 76616807 -65654637 + L1ME3 LINE L1 3191 4795 -1351 3410 72 9 5 chr9 76616807 76617249 -65654195 - MLT2A1 LTR ERVL 0 444 1 1585 276 106 53 chr9 76617249 76617571 -65653873 + L1ME3 LINE L1 4795 5098 -1048 432 234 58 140 chr9 76617587 76617712 -65653732 + L1ME3 LINE L1 5069 5203 -943 1125 113 0 0 chr9 76617712 76617871 -65653573 + L1PA10 LINE L1 5999 6157 -11 432 234 58 140 chr9 76617871 76617892 -65653552 + L1ME3 LINE L1 5203 5224 -922 405 0 0 0 chr9 76617892 76617937 -65653507 + (CA)n Simple_repeat Simple_repeat 2 46 0 432 234 58 140 chr9 76617937 76618067 -65653377 + L1ME3 LINE L1 5224 5323 -823 439 300 160 13 chr9 76618142 76618529 -65652915 + L1ME3 LINE L1 5383 5826 -336 577 234 60 12 chr9 76618536 76618703 -65652741 + L1M4 LINE L1 12 186 -6673 * 4786 214 84 43 chr9 76618682 76620208 -65651236 + L1M4 LINE L1 4548 6136 -821 15390 220 36 15 chr9 76620216 76621035 -65650409 + L1PA15 LINE L1 1247 2047 -4769 1601 208 23 10 chr9 76621035 76621343 -65650101 + AluJo SINE Alu 1 312 0 15390 220 36 15 chr9 76621343 76623407 -65648037 + L1PA15 LINE L1 2047 4067 -2749 3510 74 58 0 chr9 76623407 76623892 -65647552 + L1PA8 LINE L1 5660 6172 0 15390 220 36 15 chr9 76623892 76626437 -65645007 + L1PA15 LINE L1 4067 6815 -1 1071 159 68 14 chr9 76626433 76626653 -65644791 + L1M4 LINE L1 6130 6361 -624 * 225 202 109 76 chr9 76626637 76626756 -65644688 - L1MEd LINE L1 -4753 1378 1256 * 407 233 111 38 chr9 76626908 76627170 -65644274 - L1MEd LINE L1 -4936 1183 903 337 92 0 31 chr9 76627263 76627328 -65644116 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 654 275 60 92 chr9 76627331 76627731 -65643713 - L2 LINE L2 -1 3312 2926 2242 95 0 0 chr9 76627755 76628039 -65643405 + AluSg SINE Alu 4 287 -23 25 0 0 0 chr9 76628039 76628064 -65643380 + AT_rich Low_complexity Low_complexity 1 25 0 7110 145 29 16 chr9 76628064 76630499 -65640945 - L1MA3 LINE L1 -3 7721 5251 3963 162 22 5 chr9 76630502 76631706 -65639738 - L1MA3 LINE L1 -3325 4240 3016 * 13901 160 29 6 chr9 76631704 76633974 -65637470 - L1MA3 LINE L1 -5225 2340 20 3586 264 200 49 chr9 76633990 76635906 -65635538 - L2 LINE L2 -405 2909 704 911 206 36 0 chr9 76635913 76636107 -65635337 - MER3 DNA MER1_type 0 209 9 399 218 11 0 chr9 76636110 76636197 -65635247 - L2 LINE L2 -2610 704 617 579 328 51 27 chr9 76636197 76636400 -65635044 - L2 LINE L2 -2831 483 271 514 90 26 0 chr9 76636400 76636478 -65634966 + MADE1 DNA Mariner 1 80 0 579 328 51 27 chr9 76636478 76636530 -65634914 - L2 LINE L2 -3043 271 222 31548 119 11 45 chr9 76636537 76642909 -65628535 + L1PA7 LINE L1 12 6153 -1 511 338 33 0 chr9 76642924 76643075 -65628369 - L2 LINE L2 -3072 242 87 363 250 23 6 chr9 76643170 76643346 -65628098 + (TA)n Simple_repeat Simple_repeat 1 179 0 369 350 31 11 chr9 76643513 76643773 -65627671 - HAL1b LINE L1 -671 677 413 1818 147 45 3 chr9 76643983 76644275 -65627169 + AluJb SINE Alu 2 305 -7 1890 154 10 7 chr9 76645085 76645384 -65626060 - AluJb SINE Alu -12 300 1 219 308 77 0 chr9 76645464 76645542 -65625902 + MIR SINE MIR 1 84 -178 255 31 0 0 chr9 76645647 76645679 -65625765 + (CA)n Simple_repeat Simple_repeat 1 32 0 2274 125 0 0 chr9 76646016 76646328 -65625116 + AluSx SINE Alu 1 312 0 303 290 173 6 chr9 76646756 76646918 -65624526 + MIR SINE MIR 74 262 0 5135 125 33 12 chr9 76647911 76648217 -65623227 - Tigger3b DNA MER2_type -1797 1231 933 2623 86 19 6 chr9 76648217 76648576 -65622868 + THE1B LTR MaLR 1 364 0 5135 125 33 12 chr9 76648576 76649147 -65622297 - Tigger3b DNA MER2_type -2095 933 336 1840 130 23 74 chr9 76649756 76650109 -65621335 - Tigger3b DNA MER2_type -895 336 2 287 301 71 53 chr9 76650182 76650295 -65621149 + L2 LINE L2 3139 3253 -19 2222 123 3 3 chr9 76650380 76650690 -65620754 + AluSx SINE Alu 3 312 0 1005 218 62 0 chr9 76650803 76651014 -65620430 + MER58A DNA MER1_type 1 224 0 689 172 75 81 chr9 76652157 76652343 -65619101 - MER5A DNA MER1_type -1 188 4 311 184 206 88 chr9 76652372 76652508 -65618936 - MER5A DNA MER1_type 0 189 38 207 286 0 0 chr9 76652685 76652734 -65618710 + CT-rich Low_complexity Low_complexity 1 49 0 464 313 18 6 chr9 76652807 76652970 -65618474 + MIR3 SINE MIR 21 185 -23 539 312 65 9 chr9 76653408 76653623 -65617821 + MIR SINE MIR 20 246 -16 414 257 164 0 chr9 76653680 76653820 -65617624 + MIR SINE MIR 27 189 -73 1653 206 53 44 chr9 76654332 76654788 -65616656 + LTR40b LTR ERVL 2 461 -1 346 193 12 36 chr9 76654882 76654965 -65616479 + MIR SINE MIR 126 206 -56 404 293 115 11 chr9 76655067 76655241 -65616203 + MIR SINE MIR 53 244 -18 188 364 45 23 chr9 76655299 76655387 -65616057 + L2 LINE L2 3174 3263 -50 287 217 107 0 chr9 76655411 76655483 -65615961 - L2 LINE L2 0 3272 3201 26 0 0 0 chr9 76657101 76657127 -65614317 + AT_rich Low_complexity Low_complexity 1 26 0 202 241 90 0 chr9 76658223 76658307 -65613137 - MIR SINE MIR -59 149 68 21 0 0 0 chr9 76659252 76659273 -65612171 + AT_rich Low_complexity Low_complexity 1 21 0 348 279 16 0 chr9 76659530 76659659 -65611785 - L1MD3 LINE L1 -1 7994 7864 813 159 111 32 chr9 76660076 76660265 -65611179 - MLT2B2 LTR ERVL 0 515 312 2587 42 7 3 chr9 76660483 76660792 -65610652 - AluY SINE Alu -1 310 1 209 340 142 38 chr9 76661023 76661129 -65610315 + L2 LINE L2 3105 3221 -51 419 237 113 0 chr9 76661711 76661808 -65609636 - L2 LINE L2 -10 3303 3196 932 257 117 27 chr9 76662385 76662797 -65608647 + MER113 DNA MER1_type? 30 478 -43 305 306 63 27 chr9 76663859 76663970 -65607474 - MIR SINE MIR -61 147 33 272 300 0 0 chr9 76664432 76664492 -65606952 + MER5A DNA MER1_type 7 66 -123 278 235 0 157 chr9 76664518 76664595 -65606849 - MER5A DNA MER1_type -83 106 51 2289 105 0 3 chr9 76664595 76664900 -65606544 - AluSc SINE Alu -5 304 1 278 235 0 157 chr9 76664900 76664937 -65606507 - MER5A DNA MER1_type -138 51 10 734 228 44 120 chr9 76665870 76666116 -65605328 - LTR16A LTR ERVL 0 457 251 2094 114 3 54 chr9 76666116 76666431 -65605013 + AluSq SINE Alu 1 299 -14 734 228 44 120 chr9 76666431 76666659 -65604785 - LTR16A LTR ERVL -206 251 7 422 245 28 69 chr9 76667459 76667675 -65603769 - L1MC5 LINE L1 -29 7932 7726 252 0 0 0 chr9 76667899 76667927 -65603517 + (TAGG)n Simple_repeat Simple_repeat 4 31 0 413 328 60 11 chr9 76668777 76668960 -65602484 - MIR SINE MIR -67 195 4 1570 124 19 173 chr9 76669213 76669624 -65601820 + MER7A DNA MER2_type 1 346 0 332 244 8 0 chr9 76669789 76669916 -65601528 + (TA)n Simple_repeat Simple_repeat 1 128 0 22 0 0 0 chr9 76670003 76670025 -65601419 + AT_rich Low_complexity Low_complexity 1 22 0 5349 95 12 2 chr9 76670100 76671030 -65600414 + L1MA2 LINE L1 5103 6041 -263 1628 144 35 33 chr9 76671030 76671410 -65600034 - MSTA LTR MaLR 0 375 2 1749 103 15 0 chr9 76671410 76671673 -65599771 + L1MA1 LINE L1 6036 6302 0 1728 126 107 7 chr9 76672036 76672307 -65599137 - AluSg SINE Alu -12 298 1 2157 127 5 96 chr9 76673155 76673458 -65597986 + MER57A LTR ERV1 1 253 -150 2256 109 6 3 chr9 76673458 76673770 -65597674 + AluSp SINE Alu 1 313 0 2157 127 5 96 chr9 76673770 76673906 -65597538 + MER57A LTR ERV1 253 400 -3 2086 144 0 7 chr9 76673924 76674229 -65597215 + AluJb SINE Alu 1 303 -9 1343 137 58 0 chr9 76674465 76674691 -65596753 - MER7A DNA MER2_type 0 346 108 1442 169 3 137 chr9 76674697 76674861 -65596583 + AluJb SINE Alu 1 95 -217 2355 92 3 0 chr9 76674861 76675166 -65596278 + AluSp SINE Alu 1 306 -7 1442 169 3 137 chr9 76675166 76675351 -65596093 + AluJb SINE Alu 95 303 -9 1003 99 0 35 chr9 76675351 76675492 -65595952 + AluSg SINE Alu 1 136 -174 1100 114 18 159 chr9 76675500 76675727 -65595717 + AluSg/x SINE Alu 103 297 -15 551 160 60 0 chr9 76675732 76675832 -65595612 - MER7A DNA MER2_type -242 104 1 180 176 0 0 chr9 76675943 76675977 -65595467 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 283 244 100 0 chr9 76676030 76676120 -65595324 + MER102a DNA MER1_type 226 324 -6 279 0 0 0 chr9 76676304 76676335 -65595109 + (T)n Simple_repeat Simple_repeat 1 31 0 351 265 77 17 chr9 76676524 76676641 -65594803 - L2 LINE L2 -7 3306 3183 254 206 61 91 chr9 76676650 76676815 -65594629 - MLT1H LTR MaLR -15 534 375 391 257 2 18 chr9 76676976 76677097 -65594347 - MLT1H LTR MaLR -387 162 3 564 246 45 116 chr9 76677098 76677496 -65593948 - L2 LINE L2 -126 3187 2818 437 228 203 57 chr9 76677530 76677688 -65593756 - MER5A DNA MER1_type -2 187 7 219 255 0 0 chr9 76677730 76677777 -65593667 - L2 LINE L2 -547 2767 2721 182 324 122 0 chr9 76679612 76679686 -65591758 - MIR3 SINE MIR -10 198 116 217 279 85 93 chr9 76679691 76679820 -65591624 + MIR SINE MIR 16 143 -65 981 280 71 11 chr9 76681192 76681574 -65589870 - MLT1I LTR MaLR 0 409 5 2272 99 3 0 chr9 76681648 76681941 -65589503 - AluSp SINE Alu -19 294 1 2241 105 0 3 chr9 76682018 76682312 -65589132 - AluSx SINE Alu -19 293 1 1084 85 6 11 chr9 76682363 76682539 -65588905 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 205 222 37 0 chr9 76682791 76682845 -65588599 + GA-rich Low_complexity Low_complexity 1 56 0 196 345 87 47 chr9 76684198 76684473 -65586971 - L2 LINE L2 -341 2973 2688 * 452 275 168 57 chr9 76684468 76684633 -65586811 + L2 LINE L2 2827 2972 -341 2216 100 0 3 chr9 76684633 76684924 -65586520 + AluSg SINE Alu 1 290 -20 452 275 168 57 chr9 76684924 76685180 -65586264 + L2 LINE L2 2972 3295 -18 2449 158 18 67 chr9 76685180 76685236 -65586208 - L1MB8 LINE L1 -2 6176 6119 1930 131 49 21 chr9 76685236 76685564 -65585880 - MER1B DNA MER1_type 0 337 1 2449 158 18 67 chr9 76685564 76685639 -65585805 - L1MB8 LINE L1 -59 6119 6042 1421 167 34 54 chr9 76685639 76685933 -65585511 - AluJo SINE Alu -24 288 1 2449 158 18 67 chr9 76685933 76686370 -65585074 - L1MB8 LINE L1 -136 6042 5635 495 316 55 44 chr9 76686876 76687148 -65584296 - L2 LINE L2 -126 3187 2913 577 388 54 0 chr9 76687193 76687487 -65583957 - MER115 DNA AcHobo -381 312 3 1989 77 73 0 chr9 76687662 76687921 -65583523 + AluSp SINE Alu 26 303 -10 259 361 34 17 chr9 76688255 76688374 -65583070 + MIR SINE MIR 23 143 -119 1932 107 7 4 chr9 76688880 76689152 -65582292 + AluSx SINE Alu 1 273 -39 342 291 89 38 chr9 76690262 76690420 -65581024 - MIR3 SINE MIR -13 195 30 1615 179 3 36 chr9 76690560 76690861 -65580583 - AluJo SINE Alu -21 291 1 950 305 91 12 chr9 76691101 76691681 -65579763 - L1MC4a LINE L1 -1926 5882 5257 374 324 62 51 chr9 76691901 76692176 -65579268 - L1MC4a LINE L1 -1128 5018 4741 193 330 300 0 chr9 76693678 76693778 -65577666 + L2 LINE L2 3143 3272 0 832 224 87 5 chr9 76694588 76694784 -65576660 + MER58A DNA MER1_type 12 223 -1 297 179 18 0 chr9 76697103 76697159 -65574285 - MIR SINE MIR -3 259 203 1863 171 20 0 chr9 76697170 76697475 -65573969 - AluJb SINE Alu -1 311 1 829 179 8 0 chr9 76697475 76697609 -65573835 - AluJo SINE Alu -177 135 1 295 273 66 25 chr9 76697653 76697774 -65573670 - MIR SINE MIR -112 150 25 1394 140 9 5 chr9 76698188 76698402 -65573042 + AluJb SINE Alu 85 299 -13 397 209 12 0 chr9 76698404 76698490 -65572954 - MLT1G LTR MaLR -69 521 435 332 333 87 0 chr9 76698730 76698868 -65572576 + MIR SINE MIR 3 152 -110 326 295 0 0 chr9 76698867 76698945 -65572499 - L2 LINE L2 0 3272 3195 * 551 242 148 36 chr9 76698994 76699339 -65572105 - L2 LINE L2 -225 3088 2714 2355 100 0 0 chr9 76699386 76699687 -65571757 + AluSg SINE Alu 1 301 -9 219 83 0 233 chr9 76700876 76700936 -65570508 - MER5A DNA MER1_type -143 46 1 2140 225 85 18 chr9 76701432 76702100 -65569344 - L1ME1 LINE L1 -5 6161 5449 2040 116 39 3 chr9 76702346 76702630 -65568814 + AluSx SINE Alu 1 294 -18 686 132 47 23 chr9 76702747 76702876 -65568568 - FRAM SINE Alu -7 169 38 1968 157 0 10 chr9 76702983 76703295 -65568149 + AluSx SINE Alu 1 309 -3 192 327 128 13 chr9 76703636 76703792 -65567652 - L3 LINE CR1 -679 898 725 536 342 122 17 chr9 76703965 76704260 -65567184 - L3 LINE CR1 -2 1575 1250 753 93 0 0 chr9 76706031 76706138 -65565306 - AluY SINE Alu -204 107 1 1550 210 80 24 chr9 76706164 76706712 -65564732 - L1MC4 LINE L1 -101 7707 7235 15593 108 21 20 chr9 76706712 76707947 -65563497 - Tigger1 DNA MER2_type 0 2418 1177 2301 110 10 0 chr9 76707947 76708248 -65563196 - AluSx SINE Alu -8 304 1 15593 108 21 20 chr9 76708248 76709427 -65562017 - Tigger1 DNA MER2_type -1241 1177 1 1550 210 80 24 chr9 76709427 76709488 -65561956 - L1MC4 LINE L1 -573 7235 7179 210 128 0 0 chr9 76709896 76709935 -65561509 + (TG)n Simple_repeat Simple_repeat 2 40 0 2248 124 3 0 chr9 76710547 76710853 -65560591 + AluSx SINE Alu 1 307 -5 339 324 82 34 chr9 76712539 76712746 -65558698 + MLT1K LTR MaLR 13 229 -359 505 270 17 29 chr9 76712903 76713077 -65558367 - MER46C DNA MER2_type 0 338 167 1948 145 20 0 chr9 76713434 76713731 -65557713 + AluSx SINE Alu 10 312 0 289 234 37 65 chr9 76714075 76714182 -65557262 - MIR SINE MIR -55 207 104 210 210 12 25 chr9 76714416 76714497 -65556947 + (TA)n Simple_repeat Simple_repeat 2 81 0 180 200 118 47 chr9 76714807 76714892 -65556552 + L3 LINE CR1 758 848 -729 22 35 0 0 chr9 76715654 76715683 -65555761 + AT_rich Low_complexity Low_complexity 1 29 0 250 256 34 11 chr9 76715928 76716018 -65555426 - MIR SINE MIR -45 163 69 235 253 92 11 chr9 76718260 76718347 -65553097 + MER94 DNA DNA 40 133 -1 284 300 14 0 chr9 76718480 76718550 -65552894 + MER91A DNA MER1_type 126 196 0 510 151 8 87 chr9 76718881 76719007 -65552437 + Charlie5 DNA MER1_type 12 127 -2485 * 1532 189 71 3 chr9 76719004 76719369 -65552075 + Charlie5 DNA MER1_type 2234 2623 0 249 300 79 50 chr9 76719377 76719657 -65551787 - L2 LINE L2 -22 3291 3004 437 225 92 25 chr9 76720348 76720468 -65550976 + MIR SINE MIR 15 142 -120 2448 82 0 7 chr9 76721046 76721351 -65550093 + AluSg SINE Alu 1 303 -7 501 253 133 18 chr9 76721358 76721524 -65549920 + MIR SINE MIR 1 185 -77 23 68 0 0 chr9 76721752 76721796 -65549648 + AT_rich Low_complexity Low_complexity 1 44 0 235 295 0 0 chr9 76722488 76722549 -65548895 + MIR3 SINE MIR 114 174 -34 1712 185 106 84 chr9 76722626 76722693 -65548751 - MLT2B1 LTR ERVL 0 520 456 351 65 0 0 chr9 76722693 76722739 -65548705 + (TG)n Simple_repeat Simple_repeat 1 46 0 1712 185 106 84 chr9 76722739 76723180 -65548264 - MLT2B1 LTR ERVL -64 456 1 25 31 0 0 chr9 76724530 76724562 -65546882 + AT_rich Low_complexity Low_complexity 1 32 0 346 93 0 0 chr9 76724571 76724625 -65546819 - L1PA16 LINE L1 -16 6150 6097 832 74 25 8 chr9 76724729 76724851 -65546593 - AluY SINE Alu -187 124 1 231 163 23 0 chr9 76726529 76726572 -65544872 + L3 LINE CR1 1533 1576 -1 4577 142 52 42 chr9 76726743 76726902 -65544542 + Tigger2 DNA MER2_type 2 158 -2560 2444 75 3 3 chr9 76726902 76727208 -65544236 + AluSp SINE Alu 2 307 -6 4577 142 52 42 chr9 76727208 76727995 -65543449 + Tigger2 DNA MER2_type 158 957 -1761 24 53 0 0 chr9 76730321 76730359 -65541085 + AT_rich Low_complexity Low_complexity 1 38 0 508 275 182 33 chr9 76730600 76731072 -65540372 + L3 LINE CR1 961 1572 -5 517 268 82 41 chr9 76731452 76731646 -65539798 + MIR SINE MIR 20 221 -41 2036 160 92 82 chr9 76731966 76732466 -65538978 - MLT1D LTR MaLR 0 505 1 202 222 0 22 chr9 76732772 76732817 -65538627 + MIR SINE MIR 32 75 -187 525 283 69 0 chr9 76733149 76733308 -65538136 + MIR SINE MIR 13 182 -80 755 295 122 80 chr9 76733647 76734000 -65537444 + L2 LINE L2 1933 2270 -1043 2378 93 3 0 chr9 76734000 76734310 -65537134 + AluSp SINE Alu 3 313 0 755 295 122 80 chr9 76734310 76735295 -65536149 + L2 LINE L2 2270 3313 0 354 313 86 0 chr9 76735493 76735621 -65535823 + MIR3 SINE MIR 40 178 -30 2174 103 3 7 chr9 76735766 76736058 -65535386 - AluSg SINE Alu -19 291 1 1695 192 0 17 chr9 76737025 76737317 -65534127 - AluJo SINE Alu -25 287 1 5048 67 7 19 chr9 76737339 76738037 -65533407 - L1PA6 LINE L1 -8 6146 5457 313 341 78 6 chr9 76738611 76738778 -65532666 - MIR SINE MIR -52 210 32 444 369 32 16 chr9 76740971 76741210 -65530234 + MIR SINE MIR 1 243 -19 485 257 170 29 chr9 76741374 76741545 -65529899 + MIR SINE MIR 2 196 -66 601 165 173 0 chr9 76741552 76741679 -65529765 + MER106B DNA MER1_type 1 149 -910 251 176 0 29 chr9 76741689 76741757 -65529687 + (TTAAA)n Simple_repeat Simple_repeat 2 67 0 300 266 0 0 chr9 76741808 76741872 -65529572 + MIR SINE MIR 189 252 -10 2055 123 0 0 chr9 76742184 76742452 -65528992 - AluSx SINE Alu -44 268 1 1068 115 6 0 chr9 76742452 76742609 -65528835 - THE1B LTR MaLR -206 158 1 367 286 8 71 chr9 76742845 76742971 -65528473 - L2 LINE L2 -541 2773 2656 180 0 0 0 chr9 76743538 76743558 -65527886 + (T)n Simple_repeat Simple_repeat 1 20 0 273 298 149 14 chr9 76743695 76743836 -65527608 - MIR3 SINE MIR -13 195 36 1045 243 104 9 chr9 76745301 76745695 -65525749 - MLT1F LTR MaLR -103 487 1 210 279 25 13 chr9 76745695 76745774 -65525670 + MIR SINE MIR 183 262 0 195 333 48 0 chr9 76746313 76746376 -65525068 - L2 LINE L2 -7 3265 3200 194 319 132 0 chr9 76746554 76746645 -65524799 - MER5B DNA MER1_type -24 154 52 183 316 0 18 chr9 76746649 76746706 -65524738 + L2 LINE L2 3258 3313 0 537 299 46 26 chr9 76746753 76746947 -65524497 - MIR SINE MIR -20 242 45 496 229 153 7 chr9 76746990 76747134 -65524310 - MER5A DNA MER1_type -23 166 2 25 0 0 0 chr9 76747602 76747627 -65523817 + AT_rich Low_complexity Low_complexity 1 25 0 1173 176 5 54 chr9 76747636 76747858 -65523586 + AluJo SINE Alu 77 287 -25 309 51 0 0 chr9 76748330 76748369 -65523075 + (CA)n Simple_repeat Simple_repeat 2 40 0 337 314 71 35 chr9 76749030 76749199 -65522245 + MIR3 SINE MIR 28 202 -6 754 310 121 76 chr9 76749239 76749339 -65522105 + L2 LINE L2 2210 2304 -968 2739 203 37 0 chr9 76749339 76749880 -65521564 - MER68 LTR ERV1 0 562 2 754 310 121 76 chr9 76749880 76750148 -65521296 + L2 LINE L2 2304 2559 -713 2471 74 7 0 chr9 76750148 76750457 -65520987 - AluY SINE Alu 0 311 1 754 310 121 76 chr9 76750457 76751105 -65520339 + L2 LINE L2 2559 3272 0 351 44 0 0 chr9 76751477 76751522 -65519922 + (CA)n Simple_repeat Simple_repeat 1 45 0 21 36 0 0 chr9 76751846 76751874 -65519570 + AT_rich Low_complexity Low_complexity 1 28 0 532 235 96 19 chr9 76754521 76754781 -65516663 - L1MC5 LINE L1 -159 7802 7523 192 40 0 0 chr9 76754786 76754811 -65516633 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1687 54 0 0 chr9 76754811 76755016 -65516428 - L1PA7 LINE L1 -16 6138 5934 3343 97 4 12 chr9 76755029 76755524 -65515920 - MER9 LTR ERVK -20 491 1 2196 70 13 0 chr9 76755535 76755849 -65515595 + L1P LINE L1 5017 5334 -812 1806 225 80 71 chr9 76755845 76756899 -65514545 - L1MC5 LINE L1 -428 7533 6456 * 198 0 0 0 chr9 76757203 76757225 -65514219 + (T)n Simple_repeat Simple_repeat 1 22 0 294 336 40 8 chr9 76757813 76757938 -65513506 - L2 LINE L2 -1 3271 3143 249 250 23 0 chr9 76758249 76758337 -65513107 + MER103 DNA DNA 52 141 -25 767 169 31 0 chr9 76758996 76759126 -65512318 + AluJb SINE Alu 167 300 -12 1875 238 134 65 chr9 76759158 76759545 -65511899 - L1MC4 LINE L1 -2 8040 7681 1491 184 59 21 chr9 76759545 76759833 -65511611 - AluJb SINE Alu -13 299 1 1875 238 134 65 chr9 76759833 76761161 -65510283 - L1MC4 LINE L1 -361 7681 6128 961 267 84 14 chr9 76761168 76761584 -65509860 - L1MC4 LINE L1 -1893 5915 5471 940 184 4 90 chr9 76761585 76761819 -65509625 - AluJo SINE Alu -19 293 80 21 57 0 0 chr9 76761956 76761991 -65509453 + AT_rich Low_complexity Low_complexity 1 35 0 342 293 58 37 chr9 76762419 76762610 -65508834 - HAL1b LINE L1 -672 676 482 1453 140 12 53 chr9 76763373 76763531 -65507913 - AluJb SINE Alu -24 288 142 405 0 0 0 chr9 76763531 76763576 -65507868 + (TG)n Simple_repeat Simple_repeat 2 46 0 1453 140 12 53 chr9 76763576 76763660 -65507784 - AluJb SINE Alu -170 142 56 2212 116 0 0 chr9 76764187 76764480 -65506964 - AluSg SINE Alu -3 307 15 873 122 72 22 chr9 76764611 76764791 -65506653 + MER53 DNA DNA 1 189 0 2256 62 0 0 chr9 76765115 76765390 -65506054 + AluSc SINE Alu 35 309 0 295 232 228 52 chr9 76765821 76766071 -65505373 + MLT1L LTR MaLR 314 607 -8 2432 186 18 5 chr9 76770352 76770838 -65500606 - MLT2B1 LTR ERVL -20 534 1 254 301 137 61 chr9 76771292 76771554 -65499890 + L2 LINE L2 2837 3118 -154 227 290 36 40 chr9 76772910 76773028 -65498416 - MIR SINE MIR -104 104 4 213 39 0 0 chr9 76773140 76773166 -65498278 + (TG)n Simple_repeat Simple_repeat 1 26 0 194 261 78 52 chr9 76773433 76773548 -65497896 + L3 LINE CR1 1281 1398 -179 390 190 0 13 chr9 76773649 76773728 -65497716 - MER63 DNA MER1_type -87 749 672 2044 114 52 15 chr9 76773732 76774056 -65497388 + MER1B DNA MER1_type 1 336 -1 192 333 0 0 chr9 76774100 76774148 -65497296 + L3 LINE CR1 1426 1473 -104 642 320 18 4 chr9 76774419 76774644 -65496800 + MIR SINE MIR 31 258 -4 216 111 0 0 chr9 76776722 76776758 -65494686 + (GA)n Simple_repeat Simple_repeat 2 37 0 395 278 70 78 chr9 76777222 76777548 -65493896 + L2 LINE L2 2767 3099 -214 1812 167 54 0 chr9 76778792 76779086 -65492358 + AluJo SINE Alu 1 310 -2 279 311 107 0 chr9 76779842 76779945 -65491499 - MIR3 SINE MIR -13 195 82 221 260 26 39 chr9 76780369 76780446 -65490998 + MIR3 SINE MIR 109 184 -24 783 191 15 0 chr9 76780674 76780805 -65490639 + AluJ SINE Alu 1 133 -169 198 0 0 0 chr9 76780810 76780832 -65490612 + (GA)n Simple_repeat Simple_repeat 1 22 0 23 54 0 0 chr9 76781315 76781352 -65490092 + AT_rich Low_complexity Low_complexity 1 37 0 860 181 6 31 chr9 76781358 76781518 -65489926 + AluJ SINE Alu 129 284 -28 3062 174 15 71 chr9 76783653 76784382 -65487062 - LTR8 LTR ERV1 0 691 4 7691 120 20 20 chr9 76784386 76786085 -65485359 - HUERS-P1 LTR ERV1 -1 6262 4099 1879 159 3 3 chr9 76786816 76787118 -65484326 + AluJo SINE Alu 1 302 -10 228 288 12 25 chr9 76787664 76787744 -65483700 - L2 LINE L2 -1 3271 3193 1629 191 64 9 chr9 76789031 76789377 -65482067 - MLT1A1 LTR MaLR 0 365 1 347 219 193 9 chr9 76790364 76790478 -65480966 + LTR33 LTR ERVL 1 135 -386 260 286 107 0 chr9 76791864 76791948 -65479496 + MIR SINE MIR 42 134 -74 218 290 129 0 chr9 76792113 76792175 -65479269 - MIR SINE MIR -141 121 52 637 133 103 98 chr9 76792516 76792719 -65478725 - MER89 LTR ERV1 0 559 356 180 0 0 0 chr9 76792766 76792786 -65478658 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 759 32 0 0 chr9 76795733 76795827 -65475617 + (TC)n Simple_repeat Simple_repeat 1 94 0 307 211 33 11 chr9 76795872 76795962 -65475482 + LTR67 LTR ERVL 423 514 -43 207 309 18 0 chr9 76796681 76796736 -65474708 - L2 LINE L2 -216 3056 3001 2270 107 3 3 chr9 76796973 76797273 -65474171 + AluSc SINE Alu 1 300 -9 1877 150 0 18 chr9 76797789 76798075 -65473369 + AluSx SINE Alu 8 288 -24 2437 41 34 0 chr9 76798478 76798771 -65472673 + AluY SINE Alu 1 303 -8 22 80 0 0 chr9 76799077 76799127 -65472317 + AT_rich Low_complexity Low_complexity 1 50 0 967 149 0 0 chr9 76799144 76799285 -65472159 - AluJb SINE Alu -171 141 1 2568 71 0 0 chr9 76801579 76801889 -65469555 - AluSg SINE Alu 0 310 1 2501 71 0 0 chr9 76801963 76802273 -65469171 - AluY SINE Alu -1 310 1 2169 61 0 0 chr9 76802514 76802776 -65468668 - AluY SINE Alu -16 295 34 294 354 72 19 chr9 76803952 76804161 -65467283 + MIR SINE MIR 17 236 -26 621 256 85 10 chr9 76804430 76804629 -65466815 + MER58C DNA MER1_type 2 215 0 319 273 11 11 chr9 76805457 76805545 -65465899 + L2 LINE L2 3223 3310 -3 2631 91 8 6 chr9 76807698 76808061 -65463383 - THE1B LTR MaLR 0 364 1 6325 105 277 12 chr9 76808061 76809310 -65462134 - THE1B-int LTR MaLR 0 1580 1 2602 97 14 3 chr9 76809310 76809670 -65461774 - THE1B LTR MaLR 0 364 1 635 230 91 16 chr9 76810081 76810268 -65461176 - L1MD2 LINE L1 -22 6337 6137 21 0 0 0 chr9 76810815 76810836 -65460608 + AT_rich Low_complexity Low_complexity 1 21 0 307 208 113 57 chr9 76811191 76811297 -65460147 + MIR SINE MIR 111 222 -40 1711 155 16 48 chr9 76813246 76813562 -65457882 - AluJo SINE Alu -6 306 1 369 238 117 49 chr9 76813966 76814189 -65457255 + L1MEd LINE L1 598 835 -5284 688 195 0 47 chr9 76814277 76814426 -65457018 + FLAM_A SINE Alu 1 142 0 225 295 75 25 chr9 76814427 76814627 -65456817 + L1MEd LINE L1 926 1135 -4984 3278 39 16 0 chr9 76814629 76815068 -65456376 - L1P LINE L1 -844 5302 4857 25 65 0 0 chr9 76815175 76815221 -65456223 + AT_rich Low_complexity Low_complexity 1 46 0 307 261 139 26 chr9 76815279 76815394 -65456050 + L1MEd LINE L1 1235 1362 -4767 2347 152 33 21 chr9 76815555 76815984 -65455460 - Tigger2a DNA MER2_type 0 434 1 415 340 37 4 chr9 76816622 76816866 -65454578 + L1MEd LINE L1 2659 2910 -3219 21 36 0 0 chr9 76817046 76817074 -65454370 + AT_rich Low_complexity Low_complexity 1 28 0 847 197 0 0 chr9 76817090 76817288 -65454156 + L1MA4 LINE L1 6092 6289 -11 1520 218 0 4 chr9 76817398 76817673 -65453771 + AluJo SINE Alu 21 294 -18 309 217 44 30 chr9 76817770 76817936 -65453508 + L1ME LINE L1 5314 5484 -637 2508 165 19 2 chr9 76818076 76818550 -65452894 - L1MA4 LINE L1 -5 6295 5814 1100 165 0 0 chr9 76818551 76818715 -65452729 - AluJ SINE Alu -14 298 135 6657 47 5 32 chr9 76818742 76820266 -65451178 - SVA Other Other -629 1386 549 838 168 0 0 chr9 76820269 76820400 -65451044 - AluJ SINE Alu -181 131 1 4026 158 59 32 chr9 76820400 76821752 -65449692 - L1MA4 LINE L1 -469 5831 4447 276 178 0 0 chr9 76821833 76821878 -65449566 + L1ME LINE L1 5612 5656 -465 223 322 66 33 chr9 76822240 76822361 -65449083 + MIR SINE MIR 23 147 -61 321 333 55 6 chr9 76822389 76822572 -65448872 - MER117 DNA MER1_type -5 192 1 792 171 164 39 chr9 76822672 76822982 -65448462 - Charlie5 DNA MER1_type -30 2582 2234 21 36 0 0 chr9 76825294 76825322 -65446122 + AT_rich Low_complexity Low_complexity 1 28 0 2513 69 0 0 chr9 76825410 76825713 -65445731 - AluY SINE Alu -8 303 1 263 334 22 118 chr9 76828158 76828514 -65442930 + L2 LINE L2 2946 3267 -5 467 308 60 16 chr9 76830009 76830194 -65441250 + MIR SINE MIR 48 240 -22 2257 99 0 0 chr9 76830351 76830663 -65440781 + AluSx SINE Alu 1 312 0 27 29 0 0 chr9 76830866 76830900 -65440544 + AT_rich Low_complexity Low_complexity 1 34 0 595 318 111 23 chr9 76831236 76831908 -65439536 - L2 LINE L2 0 3313 2569 230 270 63 0 chr9 76832404 76832467 -65438977 - MIR SINE MIR -72 190 124 603 319 52 12 chr9 76832560 76832808 -65438636 + L2 LINE L2 1451 1708 -1606 3823 180 26 49 chr9 76832842 76834182 -65437262 - L1PA16 LINE L1 -11 6155 4708 251 61 0 0 chr9 76834637 76834670 -65436774 + AluSq/x SINE Alu 113 145 -158 805 84 9 0 chr9 76834670 76834777 -65436667 - AluSq/x SINE Alu -205 108 1 2395 226 31 3 chr9 76834783 76835389 -65436055 - L1PA16 LINE L1 -1771 4375 3753 501 293 43 26 chr9 76835396 76835628 -65435816 + L2 LINE L2 1730 1965 -1349 223 313 12 12 chr9 76835746 76835826 -65435618 + L2 LINE L2 3234 3313 0 483 270 93 52 chr9 76835939 76836187 -65435257 + MIR SINE MIR 4 261 -1 422 202 18 37 chr9 76836439 76836511 -65434933 - MER103 DNA DNA -1 165 93 2240 105 0 0 chr9 76836511 76836851 -65434593 + AluSq SINE Alu 1 340 0 422 202 18 37 chr9 76836851 76836886 -65434558 - MER103 DNA DNA -73 93 59 321 330 70 0 chr9 76837800 76837915 -65433529 - L2 LINE L2 -7 3265 3143 2107 130 16 3 chr9 76838266 76838573 -65432871 + AluSx SINE Alu 1 311 -1 201 260 13 5 chr9 76838574 76838618 -65432826 - L2 LINE L2 -18 3295 3210 285 261 111 39 chr9 76839898 76840051 -65431393 + L3 LINE CR1 1412 1575 -2 198 358 130 0 chr9 76840700 76840823 -65430621 + MIR SINE MIR 69 207 -55 208 236 219 57 chr9 76842055 76842178 -65429266 + MIR3 SINE MIR 20 162 -46 26 0 0 0 chr9 76844263 76844289 -65427155 + AT_rich Low_complexity Low_complexity 1 26 0 313 291 62 52 chr9 76844725 76844935 -65426509 + MIR SINE MIR 25 236 -26 270 157 78 0 chr9 76845955 76846006 -65425438 - MLT1B LTR MaLR -1 389 335 2862 147 42 0 chr9 76846006 76846488 -65424956 - MER1A DNA MER1_type 0 529 28 635 207 55 0 chr9 76846498 76846643 -65424801 - MLT1B LTR MaLR -46 344 192 207 125 0 0 chr9 76846653 76846693 -65424751 + (GA)n Simple_repeat Simple_repeat 1 40 0 474 224 109 14 chr9 76846714 76846861 -65424583 - MLT1B LTR MaLR -213 161 1 1178 176 154 22 chr9 76847731 76847998 -65423446 - AluJo SINE Alu 0 302 1 304 241 124 121 chr9 76848245 76848421 -65423023 - L1ME4a LINE L1 0 6121 5947 1559 210 6 19 chr9 76848421 76848735 -65422709 - AluJo SINE Alu -2 310 1 304 241 124 121 chr9 76848735 76848906 -65422538 - L1ME4a LINE L1 -174 5947 5773 204 255 0 20 chr9 76848906 76848957 -65422487 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 2100 124 3 23 chr9 76849951 76850250 -65421194 - AluSx SINE Alu -19 293 1 447 276 18 25 chr9 76850339 76850502 -65420942 - MER103 DNA DNA -3 163 2 317 301 41 16 chr9 76850601 76850724 -65420720 + MIR SINE MIR 60 185 -77 493 210 32 164 chr9 76850784 76851003 -65420441 + MIR SINE MIR 43 232 -30 225 0 0 0 chr9 76851531 76851556 -65419888 + (CA)n Simple_repeat Simple_repeat 2 26 0 317 252 60 12 chr9 76851695 76851793 -65419651 - MIR SINE MIR -96 112 8 2140 120 10 3 chr9 76851938 76852238 -65419206 - AluSx SINE Alu -6 306 5 2376 99 0 3 chr9 76852260 76852573 -65418871 - AluSx SINE Alu 0 312 1 1862 14 0 9 chr9 76852583 76852796 -65418648 - AluYb8 SINE Alu -2 316 106 350 325 90 24 chr9 76852898 76853110 -65418334 + MIR SINE MIR 2 227 -35 398 252 109 20 chr9 76854612 76854759 -65416685 + MIR SINE MIR 92 251 -11 564 288 59 30 chr9 76855704 76855940 -65415504 - MIR SINE MIR -11 251 9 508 314 113 25 chr9 76856241 76856524 -65414920 + L2 LINE L2 2929 3236 -77 356 176 0 14 chr9 76857575 76857649 -65413795 + MIR SINE MIR 69 141 -121 715 228 80 31 chr9 76857782 76858006 -65413438 + MER46A DNA MER2_type 2 236 0 2345 201 32 9 chr9 76860354 76860892 -65410552 + L1MB2 LINE L1 5621 6170 -1 268 157 0 146 chr9 76861612 76861701 -65409743 + MER106B DNA MER1_type 14 89 -970 269 279 0 0 chr9 76862256 76862317 -65409127 + MER96 DNA MER1_type? 1 61 -114 811 258 141 7 chr9 76863303 76863601 -65407843 + MER46C DNA MER2_type 1 338 0 2246 92 0 3 chr9 76863813 76864108 -65407336 + AluSc SINE Alu 1 294 -15 22 0 0 0 chr9 76864768 76864790 -65406654 + AT_rich Low_complexity Low_complexity 1 22 0 988 126 0 0 chr9 76865910 76866045 -65405399 + FRAM SINE Alu 21 155 -21 1891 167 6 6 chr9 76866167 76866479 -65404965 + AluSx SINE Alu 1 312 0 215 219 125 16 chr9 76868326 76868390 -65403054 - MIR3 SINE MIR -46 162 92 507 286 88 6 chr9 76870226 76870408 -65401036 - L2 LINE L2 -655 2659 2463 351 286 206 11 chr9 76871960 76872149 -65399295 - MIR SINE MIR -9 253 28 313 250 54 71 chr9 76872487 76872599 -65398845 - L2 LINE L2 -30 3242 3133 32 0 0 0 chr9 76873642 76873674 -65397770 + AT_rich Low_complexity Low_complexity 1 32 0 33 73 0 0 chr9 76873996 76874064 -65397380 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr9 76874676 76874708 -65396736 + AT_rich Low_complexity Low_complexity 1 32 0 2250 129 12 26 chr9 76874989 76875406 -65396038 - L1MA1 LINE L1 0 6302 5892 425 293 36 68 chr9 76876111 76876333 -65395111 + MIR SINE MIR 4 218 -44 264 214 18 0 chr9 76876962 76877018 -65394426 - L1P LINE L1 -2467 3679 3623 2861 3 0 0 chr9 76877155 76877463 -65393981 - AluYa5 SINE Alu -3 308 1 215 210 32 16 chr9 76877578 76877640 -65393804 + CT-rich Low_complexity Low_complexity 2 64 0 2234 89 3 49 chr9 76878157 76878484 -65392960 - AluSq SINE Alu -1 312 1 25 0 0 0 chr9 76878897 76878922 -65392522 + AT_rich Low_complexity Low_complexity 1 25 0 792 314 8 16 chr9 76879449 76879697 -65391747 + MIR SINE MIR 10 255 -7 2189 95 3 10 chr9 76879806 76880111 -65391333 + AluSc SINE Alu 1 303 -6 712 322 34 26 chr9 76880738 76880971 -65390473 + MIR SINE MIR 16 250 -12 255 246 77 0 chr9 76881169 76881234 -65390210 - MLT1J LTR MaLR -210 301 232 264 59 0 0 chr9 76881509 76881543 -65389901 + (TG)n Simple_repeat Simple_repeat 1 34 0 1473 222 18 9 chr9 76881649 76881673 -65389771 + L1PB4 LINE L1 5804 5826 -330 2249 106 3 0 chr9 76881673 76881965 -65389479 + AluSp SINE Alu 1 293 -20 1473 222 18 9 chr9 76881965 76882283 -65389161 + L1PB4 LINE L1 5826 6149 -7 433 323 56 15 chr9 76883124 76883322 -65388122 - MIR SINE MIR -44 218 13 204 40 0 0 chr9 76884248 76884273 -65387171 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 414 272 98 41 chr9 76885725 76885971 -65385473 + MIR SINE MIR 1 260 -2 364 333 132 11 chr9 76888003 76888192 -65383252 - MIR SINE MIR -5 257 46 22 35 0 0 chr9 76889860 76889889 -65381555 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr9 76890199 76890228 -65381216 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr9 76890625 76890661 -65380783 + AT_rich Low_complexity Low_complexity 1 36 0 209 98 24 0 chr9 76895115 76895156 -65376288 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 299 300 153 18 chr9 76896350 76896573 -65374871 - MARNA DNA Mariner -189 397 145 1387 209 58 102 chr9 76896810 76897136 -65374308 - L1ME1 LINE L1 -5 6161 5865 2435 98 6 0 chr9 76897136 76897484 -65373960 + L1PA14 LINE L1 5810 6159 -2 1387 209 58 102 chr9 76897484 76897675 -65373769 - L1ME1 LINE L1 -301 5865 5667 510 296 199 5 chr9 76897678 76897874 -65373570 - L2 LINE L2 -239 3074 2841 561 324 11 27 chr9 76899799 76899984 -65371460 + MER91A DNA MER1_type 1 182 -14 2240 101 3 0 chr9 76900185 76900472 -65370972 + AluSg SINE Alu 1 288 -22 333 145 0 0 chr9 76901833 76901895 -65369549 + (TA)n Simple_repeat Simple_repeat 2 63 0 253 336 27 9 chr9 76902150 76902260 -65369184 + MIR SINE MIR 84 195 -67 183 360 169 11 chr9 76903227 76903416 -65368028 + L2 LINE L2 2555 2773 -541 2234 89 3 0 chr9 76904859 76905166 -65366278 + AluSq SINE Alu 1 308 0 372 248 37 0 chr9 76906711 76906820 -65364624 + MER81 DNA DNA 1 113 -1 235 239 30 15 chr9 76908311 76908378 -65363066 - L2 LINE L2 0 3272 3205 28 0 0 0 chr9 76909557 76909585 -65361859 + AT_rich Low_complexity Low_complexity 1 28 0 187 295 89 45 chr9 76909913 76910025 -65361419 - L2 LINE L2 -31 3241 3125 185 308 0 15 chr9 76910067 76910132 -65361312 + L2 LINE L2 3209 3272 0 243 170 0 0 chr9 76910136 76910183 -65361261 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 511 300 117 14 chr9 76911111 76911334 -65360110 + MIR SINE MIR 9 254 -8 304 336 107 0 chr9 76912367 76912498 -65358946 - MIR SINE MIR -5 257 113 669 344 89 30 chr9 76912523 76912994 -65358450 - L2 LINE L2 0 3313 2815 887 187 94 0 chr9 76913088 76913259 -65358185 + MER5A DNA MER1_type 2 188 -1 798 255 42 5 chr9 76914082 76914298 -65357146 - MER58A DNA MER1_type 0 224 1 2198 102 3 3 chr9 76914322 76914626 -65356818 - AluSc SINE Alu -5 304 1 2283 105 0 10 chr9 76915275 76915579 -65355865 - AluSx SINE Alu -11 301 1 180 0 0 0 chr9 76918364 76918384 -65353060 + (T)n Simple_repeat Simple_repeat 1 20 0 185 220 17 68 chr9 76918468 76918527 -65352917 + L2 LINE L2 1486 1541 -1773 22 0 0 0 chr9 76918576 76918598 -65352846 + AT_rich Low_complexity Low_complexity 1 22 0 490 229 156 41 chr9 76918784 76919002 -65352442 + MIR SINE MIR 20 262 0 640 255 0 20 chr9 76919018 76919171 -65352273 - MER5A DNA MER1_type -30 159 10 398 264 12 25 chr9 76921766 76921929 -65349515 - MER103 DNA DNA -1 165 5 2103 109 14 0 chr9 76922663 76922948 -65348496 - AluSx SINE Alu -19 293 5 232 272 72 16 chr9 76923039 76923164 -65348280 - LTR67 LTR ERVL -2 555 424 1812 185 72 116 chr9 76923217 76923583 -65347861 - L1ME2 LINE L1 -9 6155 5773 343 169 68 0 chr9 76923583 76923642 -65347802 + MER2 DNA MER2_type 283 345 0 1812 185 72 116 chr9 76923642 76923925 -65347519 - L1ME2 LINE L1 -391 5773 5479 204 40 0 0 chr9 76924034 76924059 -65347385 + (TA)n Simple_repeat Simple_repeat 1 25 0 274 232 91 0 chr9 76925914 76926013 -65345431 + MER97c DNA MER1_type? 43 150 -940 595 274 101 9 chr9 76927518 76927737 -65343707 + MIR SINE MIR 9 247 -15 336 83 0 0 chr9 76927996 76928044 -65343400 + (T)n Simple_repeat Simple_repeat 1 48 0 2067 122 24 3 chr9 76928195 76928489 -65342955 + AluSx SINE Alu 1 300 -12 477 154 143 0 chr9 76928510 76928601 -65342843 + MER3 DNA MER1_type 13 116 -93 404 134 0 15 chr9 76928709 76928776 -65342668 - AluS SINE Alu -245 66 1 819 140 0 0 chr9 76929364 76929507 -65341937 + (GAATG)n Simple_repeat Simple_repeat 3 145 0 432 310 57 20 chr9 76929612 76929912 -65341532 - L1ME LINE L1 -317 5804 5494 204 211 0 0 chr9 76929912 76929950 -65341494 + GA-rich Low_complexity Low_complexity 1 38 0 565 324 161 26 chr9 76930302 76931099 -65340345 - L1ME LINE L1 -1120 5026 4123 2271 102 3 13 chr9 76931174 76931487 -65339957 + AluSx SINE Alu 1 310 -2 442 241 0 71 chr9 76932602 76932743 -65338701 + MIR3 SINE MIR 78 208 0 325 137 96 0 chr9 76934174 76934247 -65337197 - L1MA8 LINE L1 0 6291 6212 435 277 15 39 chr9 76934752 76934882 -65336562 + L2 LINE L2 3187 3313 0 29 0 0 0 chr9 76934952 76934981 -65336463 + AT_rich Low_complexity Low_complexity 1 29 0 1895 170 185 23 chr9 76935792 76936274 -65335170 - MER68 LTR ERV1 -2 560 1 1132 209 44 73 chr9 76936303 76936785 -65334659 - LTR37B LTR ERV1 0 468 1 273 301 192 10 chr9 76937443 76937636 -65333808 - MIR SINE MIR -11 251 24 637 317 7 9 chr9 76939719 76939939 -65331505 + MIR SINE MIR 15 232 -30 1460 156 81 27 chr9 76940013 76940385 -65331059 - Charlie5 DNA MER1_type 0 2624 2233 420 217 53 59 chr9 76940393 76940545 -65330899 - MER3 DNA MER1_type -87 122 19 27 0 0 0 chr9 76941166 76941193 -65330251 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 19 chr9 76941367 76941396 -65330048 + AT_rich Low_complexity Low_complexity 1 30 -23 1719 142 38 24 chr9 76941396 76941685 -65329759 - AluJo SINE Alu -19 293 1 22 56 0 19 chr9 76941685 76941709 -65329735 + AT_rich Low_complexity Low_complexity 30 53 0 2358 132 41 34 chr9 76944000 76944438 -65327006 - L1MC1 LINE L1 0 6333 5893 477 260 58 0 chr9 76944490 76944663 -65326781 - L1ME4a LINE L1 -213 5908 5726 183 274 55 27 chr9 76944694 76944767 -65326677 - MIR SINE MIR -77 185 111 533 164 77 17 chr9 76944844 76944959 -65326485 - MER5B DNA MER1_type -56 133 1 297 196 186 31 chr9 76944993 76945090 -65326354 + MIR3 SINE MIR 97 208 0 414 257 129 14 chr9 76945362 76945502 -65325942 + MIR SINE MIR 21 176 -86 1431 122 51 0 chr9 76945900 76946114 -65325330 + AluSg/x SINE Alu 81 305 -7 516 253 82 79 chr9 76946431 76946747 -65324697 + HsTC2 DNA Tc2 2 318 -1580 558 177 51 6 chr9 76946752 76946910 -65324534 + HsTC2 DNA Tc2 1731 1895 -3 208 147 0 0 chr9 76947431 76947465 -65323979 + (A)n Simple_repeat Simple_repeat 1 34 0 197 159 23 0 chr9 76947474 76947518 -65323926 + CT-rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr9 76948386 76948408 -65323036 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 76949600 76949628 -65321816 + AT_rich Low_complexity Low_complexity 1 28 0 290 286 21 111 chr9 76950697 76950886 -65320558 - MIR SINE MIR -14 248 77 217 293 0 0 chr9 76952773 76952814 -65318630 - L2 LINE L2 -96 3176 3136 1964 163 45 0 chr9 76953112 76953444 -65318000 - MER7A DNA MER2_type 0 346 2 929 295 224 13 chr9 76953685 76954615 -65316829 + L2 LINE L2 2120 3313 0 428 285 185 25 chr9 76955313 76955513 -65315931 - MIR SINE MIR 0 262 31 583 282 57 80 chr9 76956155 76956645 -65314799 + L2 LINE L2 2444 2922 -392 206 219 0 0 chr9 76956984 76957025 -65314419 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 739 212 85 76 chr9 76957386 76957789 -65313655 + MLT1E2 LTR MaLR 83 626 0 937 253 56 0 chr9 76957869 76958102 -65313342 + MIR SINE MIR 15 260 -2 201 346 225 8 chr9 76958105 76958492 -65312952 + L2 LINE L2 2434 2904 -410 214 122 24 24 chr9 76958495 76958536 -65312908 + CT-rich Low_complexity Low_complexity 2 42 0 416 322 41 7 chr9 76958648 76958794 -65312650 + L2 LINE L2 3122 3272 0 875 201 43 27 chr9 76960063 76960247 -65311197 - MER5A DNA MER1_type 0 189 3 442 259 133 0 chr9 76960295 76960430 -65311014 + MIR SINE MIR 49 201 -61 2089 136 29 11 chr9 76961204 76961580 -65309864 + L1MB3 LINE L1 5801 6183 0 444 224 24 24 chr9 76962387 76962512 -65308932 - MIR SINE MIR -118 144 20 1853 103 29 7 chr9 76962984 76963265 -65308179 + L1MA8 LINE L1 5995 6281 -10 2400 89 0 0 chr9 76963357 76963660 -65307784 - AluSx SINE Alu -9 303 1 362 314 48 14 chr9 76965096 76965303 -65306141 + MIR SINE MIR 15 228 -34 751 264 41 5 chr9 76966295 76966515 -65304929 + MIR SINE MIR 32 259 -3 1896 109 69 4 chr9 76966790 76967065 -65304379 + AluSg SINE Alu 9 301 -9 1952 122 6 70 chr9 76967937 76968265 -65303179 - AluSx SINE Alu -5 307 1 350 286 54 9 chr9 76969059 76969171 -65302273 - MIR SINE MIR -72 190 74 338 304 0 0 chr9 76969175 76969267 -65302177 - MIR SINE MIR 0 262 171 344 266 57 24 chr9 76969346 76969470 -65301974 - MIR SINE MIR -131 131 4 210 118 0 0 chr9 76969580 76969614 -65301830 + (TG)n Simple_repeat Simple_repeat 1 34 0 252 315 108 15 chr9 76970538 76970668 -65300776 - L3 LINE CR1 -98 1479 1338 585 277 14 33 chr9 76970976 76971195 -65300249 + MIR SINE MIR 38 251 -11 1674 186 3 3 chr9 76972046 76972336 -65299108 - AluJb SINE Alu -20 292 3 224 279 29 0 chr9 76972439 76972507 -65298937 - MIR SINE MIR -117 145 76 543 329 84 36 chr9 76972726 76973358 -65298086 + L2 LINE L2 2196 2857 -457 1242 262 31 31 chr9 76973475 76973834 -65297610 + LTR16C LTR ERVL 133 491 0 220 92 145 26 chr9 76974070 76974146 -65297298 + (TTTAA)n Simple_repeat Simple_repeat 4 88 0 549 297 19 28 chr9 76974362 76974574 -65296870 - L2 LINE L2 -4 3309 3100 1888 204 18 23 chr9 76975673 76976071 -65295373 + MSTD LTR MaLR 1 396 0 259 336 0 88 chr9 76976280 76976417 -65295027 + L2 LINE L2 3144 3268 -4 1982 176 71 49 chr9 76976599 76977093 -65294351 + MLT1D LTR MaLR 1 505 0 236 211 53 0 chr9 76977154 76977211 -65294233 + MIR SINE MIR 64 123 -139 575 228 41 41 chr9 76979171 76979342 -65292102 - MER91A DNA MER1_type -11 185 15 1830 90 0 115 chr9 76981357 76981679 -65289765 - AluSx SINE Alu -13 299 15 267 234 39 13 chr9 76981853 76981930 -65289514 + L2 LINE L2 3194 3272 0 251 191 16 0 chr9 76982384 76982447 -65288997 + GA-rich Low_complexity Low_complexity 4 67 0 3566 141 4 0 chr9 76983911 76984409 -65287035 + MER1A DNA MER1_type 1 500 -29 2492 113 16 16 chr9 76984409 76984782 -65286662 - THE1C LTR MaLR 0 375 3 485 226 24 24 chr9 76985857 76985981 -65285463 + MER5A DNA MER1_type 1 124 -65 506 286 107 21 chr9 76987605 76987839 -65283605 + Charlie8 DNA MER1_type 71 324 -2093 289 262 64 85 chr9 76988038 76988179 -65283265 + MIR SINE MIR 125 262 0 325 288 45 9 chr9 76988446 76988557 -65282887 + L2 LINE L2 3199 3313 0 318 331 63 16 chr9 76988561 76988688 -65282756 + MIR3 SINE MIR 7 139 -69 186 133 0 0 chr9 76988690 76988720 -65282724 + (GAA)n Simple_repeat Simple_repeat 2 31 0 1930 146 3 26 chr9 76990871 76991173 -65280271 + AluJb SINE Alu 1 295 -17 301 288 0 0 chr9 76991209 76991289 -65280155 - MER116 DNA Mariner 0 80 1 2256 119 0 3 chr9 76992798 76993110 -65278334 + AluSx SINE Alu 1 311 -1 245 354 0 24 chr9 76993169 76993301 -65278143 + MIR SINE MIR 20 148 -60 2366 108 0 0 chr9 76994545 76994852 -65276592 + AluSx SINE Alu 1 307 -5 425 250 195 0 chr9 76995255 76995383 -65276061 - MER5A DNA MER1_type -6 183 31 1056 147 22 31 chr9 76995471 76995696 -65275748 - L1MA4 LINE L1 -1 6299 6077 1940 162 0 7 chr9 76997326 76997622 -65273822 + AluJb SINE Alu 1 294 -18 202 345 36 0 chr9 76999208 76999292 -65272152 - L2 LINE L2 -632 2682 2596 1983 256 59 28 chr9 76999365 76999422 -65272022 + L1MC4a LINE L1 5361 5415 -2393 2346 92 0 25 chr9 76999422 76999738 -65271706 + AluSx SINE Alu 1 308 -4 1983 256 59 28 chr9 76999738 77000210 -65271234 + L1MC4a LINE L1 5415 5916 -1892 6109 65 14 13 chr9 77000210 77000989 -65270455 - LTR17 LTR ERV1 0 780 1 1983 256 59 28 chr9 77000989 77001107 -65270337 + L1MC4a LINE L1 5916 6029 -1779 2377 91 0 10 chr9 77001146 77001455 -65269989 - AluSg SINE Alu -4 306 1 796 173 0 0 chr9 77001474 77001601 -65269843 - FLAM_C SINE Alu -6 127 1 689 279 103 54 chr9 77001660 77002149 -65269295 + L1MC4 LINE L1 6936 7453 -589 1566 161 84 3 chr9 77002149 77002434 -65269010 - AluJo SINE Alu -4 308 1 689 279 103 54 chr9 77002434 77002460 -65268984 + L1MC4 LINE L1 7453 7476 -566 994 236 34 5 chr9 77002467 77002675 -65268769 + MER20 DNA MER1_type 1 214 -5 4661 164 30 65 chr9 77002877 77003079 -65268365 + L1MC3 LINE L1 6652 6859 -926 288 83 0 62 chr9 77003079 77003127 -65268317 + tRNA-Cys-TGC tRNA tRNA 2 46 -29 4661 164 30 65 chr9 77003127 77003396 -65268048 + L1MC3 LINE L1 6859 7136 -649 2249 103 10 0 chr9 77003396 77003687 -65267757 + AluSc SINE Alu 1 294 -15 4661 164 30 65 chr9 77003687 77004172 -65267272 + L1MC3 LINE L1 7136 7621 -164 688 248 3 9 chr9 77004171 77004354 -65267090 + L1ME1 LINE L1 6011 6332 -2 * 1605 204 3 0 chr9 77004359 77004653 -65266791 + AluJo SINE Alu 3 297 -15 2421 87 0 10 chr9 77004653 77004965 -65266479 + AluSg1 SINE Alu 1 309 0 483 313 67 19 chr9 77005036 77005244 -65266200 - MIR SINE MIR -3 259 42 2276 62 0 14 chr9 77005357 77005674 -65265770 + AluY SINE Alu 1 313 0 1174 260 104 7 chr9 77007304 77007633 -65263811 - MLT1I LTR MaLR -46 363 8 186 246 200 0 chr9 77008132 77008197 -65263247 - L2 LINE L2 -8 3305 3228 322 237 41 124 chr9 77008240 77008376 -65263068 - MER5B DNA MER1_type 0 178 61 2070 154 0 0 chr9 77008376 77008674 -65262770 + AluJb SINE Alu 1 298 -14 322 237 41 124 chr9 77008674 77008731 -65262713 - MER5B DNA MER1_type -117 61 1 1475 205 0 45 chr9 77008910 77009222 -65262222 + AluJo SINE Alu 1 298 -14 552 229 8 8 chr9 77009226 77009344 -65262100 - MIR SINE MIR -113 149 32 291 173 53 13 chr9 77010475 77010550 -65260894 + L2 LINE L2 3182 3259 -13 919 276 70 46 chr9 77012561 77012828 -65258616 + L2 LINE L2 2812 3096 -217 255 31 0 0 chr9 77012828 77012860 -65258584 + (CA)n Simple_repeat Simple_repeat 2 33 0 919 276 70 46 chr9 77012860 77013052 -65258392 + L2 LINE L2 3096 3282 -31 182 318 0 16 chr9 77013134 77013197 -65258247 - L2 LINE L2 -2810 504 443 * 224 243 14 54 chr9 77013196 77013270 -65258174 + MIR3 SINE MIR 89 159 -49 401 219 102 44 chr9 77013480 77013617 -65257827 + MIR SINE MIR 57 201 -61 2140 227 105 36 chr9 77013618 77014199 -65257245 + MLT1E2 LTR MaLR 1 621 -5 229 259 0 0 chr9 77014205 77014263 -65257181 + MIR SINE MIR 194 251 -11 471 268 45 17 chr9 77014482 77014661 -65256783 + L1MC4a LINE L1 7280 7463 -345 1109 222 51 45 chr9 77014674 77014985 -65256459 + L1 LINE L1 4172 4484 -1662 4473 29 2 0 chr9 77014987 77015506 -65255938 - L1P LINE L1 -1607 4539 4020 8093 31 0 0 chr9 77015506 77017159 -65254285 + L1PA3 LINE L1 4503 6155 0 4899 152 66 22 chr9 77017164 77018787 -65252657 + L1PA16 LINE L1 4477 6166 0 1405 203 94 52 chr9 77018796 77019283 -65252161 + L1MC4 LINE L1 7557 7995 0 21 0 0 0 chr9 77021058 77021079 -65250365 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr9 77021319 77021346 -65250098 + (CA)n Simple_repeat Simple_repeat 2 28 0 1926 168 0 9 chr9 77021922 77022237 -65249207 + AluJo SINE Alu 1 312 0 452 265 17 8 chr9 77022243 77022360 -65249084 + MIR SINE MIR 25 142 -66 451 222 126 0 chr9 77022366 77022501 -65248943 - MER102b DNA MER1_type -1 340 189 21 0 0 0 chr9 77023365 77023386 -65248058 + AT_rich Low_complexity Low_complexity 1 21 0 362 294 133 21 chr9 77024202 77024345 -65247099 + MIR3 SINE MIR 15 173 -35 1612 179 29 81 chr9 77024867 77024916 -65246528 - MLT1C LTR MaLR -4 463 413 862 125 16 0 chr9 77024916 77025044 -65246400 + FLAM_C SINE Alu 1 130 -3 1612 179 29 81 chr9 77025044 77025403 -65246041 - MLT1C LTR MaLR -54 413 76 212 305 35 121 chr9 77025576 77025853 -65245591 + L2 LINE L2 2505 2734 -580 2415 90 0 6 chr9 77025853 77026164 -65245280 + AluSc SINE Alu 1 309 0 212 305 35 121 chr9 77026164 77026315 -65245129 + L2 LINE L2 2734 2896 -418 203 283 17 83 chr9 77026462 77026582 -65244862 + L2 LINE L2 2934 3045 -227 285 29 0 0 chr9 77026936 77026970 -65244474 + (TA)n Simple_repeat Simple_repeat 2 35 0 1604 170 0 53 chr9 77027038 77027321 -65244123 - AluJo SINE Alu -44 268 1 1722 284 45 30 chr9 77027343 77028097 -65243347 - L1MEd LINE L1 -4906 1213 449 1448 193 124 37 chr9 77028122 77028470 -65242974 - MSTB LTR MaLR 0 426 49 21 71 0 0 chr9 77028470 77028512 -65242932 + AT_rich Low_complexity Low_complexity 1 42 0 2173 133 0 0 chr9 77028796 77029098 -65242346 - AluSx SINE Alu -10 302 1 181 344 70 16 chr9 77029243 77029371 -65242073 + L2 LINE L2 3167 3301 -12 41 0 0 0 chr9 77029585 77029626 -65241818 + AT_rich Low_complexity Low_complexity 1 41 0 663 288 102 22 chr9 77029708 77030118 -65241326 + L2 LINE L2 2677 3119 -194 456 233 78 9 chr9 77030142 77030258 -65241186 - L2 LINE L2 -1 3312 3189 2010 109 21 11 chr9 77030319 77030603 -65240841 + AluSx SINE Alu 1 287 -25 22 56 0 0 chr9 77030604 77030640 -65240804 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 77031994 77032016 -65239428 + AT_rich Low_complexity Low_complexity 1 22 0 273 119 0 0 chr9 77032049 77032091 -65239353 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 9345 129 42 20 chr9 77032236 77032290 -65239154 + Tigger1 DNA MER2_type 1 52 -2366 8337 17 0 0 chr9 77032290 77033369 -65238075 - L1PA2 LINE L1 -5 6150 5072 9345 129 42 20 chr9 77033369 77033833 -65237611 + Tigger1 DNA MER2_type 52 504 -1914 1966 137 20 0 chr9 77033833 77034133 -65237311 + AluJo SINE Alu 1 306 -6 9345 129 42 20 chr9 77034133 77035036 -65236408 + Tigger1 DNA MER2_type 504 1462 -956 1674 199 0 0 chr9 77035036 77035322 -65236122 - AluJb SINE Alu -26 286 1 9345 129 42 20 chr9 77035322 77035430 -65236014 + Tigger1 DNA MER2_type 1462 1566 -852 1150 119 68 0 chr9 77035494 77035670 -65235774 - AluJo SINE Alu -3 309 122 239 29 57 0 chr9 77035678 77035713 -65235731 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 1450 179 114 0 chr9 77035715 77035988 -65235456 - AluJb SINE Alu -4 308 5 1385 88 83 0 chr9 77036005 77036197 -65235247 - L1PA16 LINE L1 -9 6157 5950 5786 104 46 2 chr9 77036197 77037027 -65234417 + Tigger1 DNA MER2_type 1553 2418 0 2721 113 3 24 chr9 77037595 77037895 -65233549 + THE1B LTR MaLR 1 293 -71 2449 93 3 0 chr9 77037895 77038207 -65233237 - AluSp SINE Alu 0 313 1 2721 113 3 24 chr9 77038207 77038278 -65233166 + THE1B LTR MaLR 293 364 0 23 33 0 0 chr9 77038293 77038323 -65233121 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 77039180 77039208 -65232236 + AT_rich Low_complexity Low_complexity 1 28 0 2404 87 0 0 chr9 77040834 77041134 -65230310 - AluY SINE Alu -11 300 1 573 163 20 0 chr9 77041671 77041769 -65229675 + FLAM_C SINE Alu 21 120 -23 624 192 0 0 chr9 77041864 77041963 -65229481 + FLAM_C SINE Alu 22 120 -23 455 48 16 0 chr9 77042843 77042905 -65228539 + (CA)n Simple_repeat Simple_repeat 1 63 0 344 339 96 0 chr9 77043298 77043413 -65228031 + L3 LINE CR1 627 752 -825 386 207 216 0 chr9 77044061 77044177 -65227267 - MER58B DNA MER1_type 0 341 201 371 321 31 19 chr9 77044251 77044410 -65227034 - MIR3 SINE MIR -32 176 16 21 36 0 0 chr9 77045560 77045588 -65225856 + AT_rich Low_complexity Low_complexity 1 28 0 190 308 31 0 chr9 77046393 77046458 -65224986 - MIR SINE MIR -74 134 68 1562 111 9 13 chr9 77046797 77047023 -65224421 - AluSg/x SINE Alu -1 311 87 2140 129 7 0 chr9 77047275 77047570 -65223874 + AluSx SINE Alu 2 298 -14 457 273 100 13 chr9 77047896 77048046 -65223398 + MIR SINE MIR 40 202 -60 2028 109 11 11 chr9 77048229 77048540 -65222904 + AluSq SINE Alu 1 311 0 777 163 0 116 chr9 77049450 77049622 -65221822 - FRAM SINE Alu -24 152 1 1430 134 18 13 chr9 77049710 77049934 -65221510 + AluSg/x SINE Alu 88 312 0 203 128 0 51 chr9 77052193 77052232 -65219212 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2090 124 6 16 chr9 77052747 77053062 -65218382 + AluSx SINE Alu 1 312 0 590 153 93 34 chr9 77053838 77053956 -65217488 - MER63 DNA MER1_type -84 752 2 656 298 27 5 chr9 77054040 77054228 -65217216 + MIR SINE MIR 27 218 -44 2231 117 10 0 chr9 77054351 77054658 -65216786 + AluSx SINE Alu 1 310 -2 450 260 74 85 chr9 77054784 77054921 -65216523 + L1ME4a LINE L1 5684 5821 -300 1903 146 3 3 chr9 77054921 77055215 -65216229 + AluSx SINE Alu 1 294 -18 450 260 74 85 chr9 77055215 77055454 -65215990 + L1ME4a LINE L1 5821 6056 -65 588 281 51 13 chr9 77055918 77056153 -65215291 + L1MC4a LINE L1 5697 5940 -1868 21 36 0 0 chr9 77056217 77056245 -65215199 + AT_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr9 77056319 77056345 -65215099 + (T)n Simple_repeat Simple_repeat 1 26 0 838 200 0 0 chr9 77056561 77056701 -65214743 - FLAM_C SINE Alu -3 140 1 2152 131 0 0 chr9 77057252 77057549 -65213895 + AluSx SINE Alu 1 297 -15 458 270 24 8 chr9 77057897 77058023 -65213421 - MIR SINE MIR -43 219 92 * 602 266 68 10 chr9 77058020 77058212 -65213232 - MIR SINE MIR -29 233 31 261 208 28 14 chr9 77058237 77058309 -65213135 + GA-rich Low_complexity Low_complexity 4 76 0 2109 113 3 0 chr9 77058884 77059192 -65212252 + AluSx SINE Alu 1 309 0 210 310 0 17 chr9 77059508 77059566 -65211878 + L3b LINE CR1 1519 1575 -8 1936 176 0 0 chr9 77059904 77060199 -65211245 + AluJo SINE Alu 1 295 -17 1728 153 64 3 chr9 77060380 77060662 -65210782 + AluSx SINE Alu 1 299 -13 2091 108 0 0 chr9 77060954 77061231 -65210213 + AluSx SINE Alu 21 297 -15 1721 131 91 0 chr9 77062062 77062336 -65209108 + AluJo SINE Alu 1 299 -13 726 290 128 26 chr9 77062606 77063034 -65208410 - MLT1L LTR MaLR -10 605 134 2250 120 7 0 chr9 77063197 77063506 -65207938 + AluSp SINE Alu 1 311 -2 555 289 84 9 chr9 77063966 77064191 -65207253 - MIR SINE MIR -6 256 15 1566 132 10 28 chr9 77064224 77064513 -65206931 - L1MB8 LINE L1 0 6178 5895 720 168 7 44 chr9 77064515 77064652 -65206792 + FLAM_A SINE Alu 1 132 -1 267 197 16 0 chr9 77064669 77064730 -65206714 - L1MB8 LINE L1 -268 5910 5849 2096 108 0 17 chr9 77065611 77065908 -65205536 - AluSg SINE Alu -18 292 1 2064 113 28 3 chr9 77065933 77066215 -65205229 - AluSq SINE Alu -17 296 8 2047 112 50 0 chr9 77066611 77066889 -65204555 - AluSq SINE Alu -10 303 12 216 67 0 0 chr9 77066897 77066927 -65204517 + (T)n Simple_repeat Simple_repeat 1 30 0 266 234 56 0 chr9 77067259 77067345 -65204099 - MER77 LTR ERV1 -467 138 54 1817 136 0 52 chr9 77067428 77067737 -65203707 + AluJo SINE Alu 19 311 -1 1981 139 34 7 chr9 77068057 77068352 -65203092 + AluSx SINE Alu 1 303 -9 450 272 56 19 chr9 77068540 77068702 -65202742 + MLT1H LTR MaLR 3 170 -379 478 178 59 111 chr9 77068824 77068959 -65202485 + MLT1H LTR MaLR 432 536 -13 2621 62 0 12 chr9 77069115 77069451 -65201993 + L1PA7 LINE L1 5823 6154 0 37 52 0 0 chr9 77069770 77069828 -65201616 + AT_rich Low_complexity Low_complexity 1 58 0 1373 99 11 11 chr9 77069958 77070149 -65201295 - MER4A LTR ERV1 0 664 474 713 67 0 0 chr9 77070152 77070242 -65201202 + AluSc SINE Alu 2 91 -218 2698 163 56 48 chr9 77070252 77071156 -65200288 + LTR13 LTR ERVK 16 979 -28 2229 137 0 0 chr9 77071314 77071621 -65199823 - AluSx SINE Alu -5 307 1 2337 108 0 3 chr9 77071656 77071961 -65199483 - AluSc SINE Alu -5 304 1 753 122 0 9 chr9 77071964 77072079 -65199365 - MER4A LTR ERV1 -550 114 1 2288 104 0 0 chr9 77072800 77073097 -65198347 - AluSp SINE Alu -16 297 1 1107 197 169 8 chr9 77074234 77074488 -65196956 - AluSg SINE Alu -5 295 1 2116 126 17 0 chr9 77074780 77075073 -65196371 - AluSx SINE Alu -14 298 1 2156 136 0 0 chr9 77075077 77075378 -65196066 - AluSx SINE Alu -11 301 1 271 186 114 0 chr9 77076228 77076298 -65195146 - MER5B DNA MER1_type -13 165 88 286 289 39 0 chr9 77076348 77076452 -65194992 - MIR SINE MIR -96 166 59 2281 95 3 7 chr9 77076488 77076784 -65194660 - AluSp SINE Alu -18 295 1 1876 158 0 35 chr9 77076940 77077251 -65194193 + AluJo SINE Alu 1 300 -12 217 204 56 64 chr9 77077399 77077491 -65193953 + MIR SINE MIR 52 151 -58 407 214 61 0 chr9 77077543 77077641 -65193803 - L2 LINE L2 -30 3283 3180 199 333 12 0 chr9 77077742 77077826 -65193618 - L2 LINE L2 -302 3011 2927 804 144 0 0 chr9 77077832 77077950 -65193494 + AluJb SINE Alu 1 118 -194 2251 122 0 0 chr9 77077950 77078253 -65193191 - AluJo SINE Alu -9 303 1 230 270 22 22 chr9 77078310 77078399 -65193045 - L2 LINE L2 -1 3312 3224 335 214 26 77 chr9 77079204 77079321 -65192123 - L1MC4 LINE L1 -10 8032 7922 237 197 0 0 chr9 77079331 77079392 -65192052 + CT-rich Low_complexity Low_complexity 1 61 0 1469 243 118 36 chr9 77079417 77079652 -65191792 - L1MC4 LINE L1 -133 7909 7695 1820 140 3 62 chr9 77079652 77079974 -65191470 - AluSx SINE Alu -9 303 1 1553 142 3 94 chr9 77079976 77080315 -65191129 - AluJo SINE Alu -4 308 1 1469 243 118 36 chr9 77080315 77080408 -65191036 - L1MC4 LINE L1 -347 7695 7611 2366 111 0 0 chr9 77080408 77080714 -65190730 + AluSg SINE Alu 1 306 -4 1469 243 118 36 chr9 77080714 77081018 -65190426 - L1MC4 LINE L1 -431 7611 7221 1040 109 0 14 chr9 77081322 77081460 -65189984 + AluJo SINE Alu 1 136 -176 33 43 0 0 chr9 77081460 77081507 -65189937 + AT_rich Low_complexity Low_complexity 1 47 0 2060 172 66 58 chr9 77082047 77082241 -65189203 + MLT1D LTR MaLR 2 193 -312 2563 64 0 0 chr9 77082241 77082537 -65188907 + AluY SINE Alu 1 296 -15 2060 172 66 58 chr9 77082537 77082841 -65188603 + MLT1D LTR MaLR 193 504 -1 285 27 27 0 chr9 77083036 77083073 -65188371 - MSTA LTR MaLR -390 38 1 253 313 0 0 chr9 77083521 77083601 -65187843 - MIR SINE MIR -118 144 65 1457 183 17 21 chr9 77083750 77084039 -65187405 + AluJo SINE Alu 1 288 -24 1951 138 14 51 chr9 77084785 77085156 -65186288 - THE1B LTR MaLR -7 357 1 2025 128 24 0 chr9 77085306 77085594 -65185850 + AluSg SINE Alu 1 295 -15 1877 162 0 0 chr9 77085651 77085958 -65185486 + AluSx SINE Alu 1 307 0 671 167 54 25 chr9 77086678 77086867 -65184577 - MIR SINE MIR -55 207 15 350 239 71 18 chr9 77087417 77087530 -65183914 + MIR SINE MIR 71 189 -73 23 68 0 0 chr9 77087531 77087575 -65183869 + AT_rich Low_complexity Low_complexity 1 44 0 689 214 31 13 chr9 77087623 77087782 -65183662 - MIR SINE MIR -100 162 1 1359 174 101 14 chr9 77088020 77088177 -65183267 - AluSx SINE Alu 0 312 170 189 0 0 0 chr9 77088177 77088198 -65183246 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1359 174 101 14 chr9 77088198 77088327 -65183117 - AluSx SINE Alu -142 170 1 2206 125 0 0 chr9 77088338 77088627 -65182817 - AluSx SINE Alu -23 289 1 302 210 83 112 chr9 77090154 77090359 -65181085 - L1M4 LINE L1 -1446 4700 4502 2440 82 0 0 chr9 77090402 77090696 -65180748 - AluSg SINE Alu -16 294 1 252 341 67 30 chr9 77091011 77091146 -65180298 + L2 LINE L2 3133 3272 0 231 280 55 70 chr9 77091170 77091217 -65180227 - L1MEd LINE L1 -4905 1214 1168 2268 88 20 0 chr9 77091217 77091513 -65179931 + AluSx SINE Alu 1 302 -10 231 280 55 70 chr9 77091513 77091786 -65179658 - L1MEd LINE L1 -4951 1168 899 1874 150 0 33 chr9 77091786 77092093 -65179351 + AluJb SINE Alu 1 297 -15 231 280 55 70 chr9 77092093 77092171 -65179273 - L1MEd LINE L1 -5220 899 821 849 120 8 0 chr9 77092329 77092446 -65178998 - FLAM_C SINE Alu -25 118 1 565 371 69 35 chr9 77093475 77094019 -65177425 + L2 LINE L2 2201 2772 -542 2026 146 14 0 chr9 77094019 77094187 -65177257 - AluSx SINE Alu -13 299 124 387 0 0 0 chr9 77094187 77094230 -65177214 + (TG)n Simple_repeat Simple_repeat 2 44 0 2026 146 14 0 chr9 77094230 77094356 -65177088 - AluSx SINE Alu -188 124 1 565 371 69 35 chr9 77094356 77094449 -65176995 + L2 LINE L2 2772 2860 -454 1232 167 157 4 chr9 77094745 77095026 -65176418 - MER33 DNA MER1_type 0 324 1 1241 139 16 0 chr9 77095829 77096023 -65175421 - L1PA16 LINE L1 -5 6161 5965 464 17 33 0 chr9 77096023 77096083 -65175361 + (TTTTA)n Simple_repeat Simple_repeat 2 63 0 814 219 0 0 chr9 77096117 77096263 -65175181 - AluSg/x SINE Alu -43 269 124 2286 80 0 14 chr9 77096264 77096575 -65174869 - AluY SINE Alu 0 307 1 2260 112 0 0 chr9 77096577 77096873 -65174571 - AluSx SINE Alu -16 296 1 1524 154 25 14 chr9 77096876 77097155 -65174289 - L1 LINE L1 -1126 5020 4739 37 39 0 0 chr9 77097409 77097460 -65173984 + AT_rich Low_complexity Low_complexity 1 51 0 235 229 0 0 chr9 77097916 77097977 -65173467 + T-rich Low_complexity Low_complexity 1 61 0 980 90 0 0 chr9 77098462 77098584 -65172860 + AluSq/x SINE Alu 1 122 -190 237 108 0 0 chr9 77098605 77098642 -65172802 + (A)n Simple_repeat Simple_repeat 1 37 0 2278 119 8 43 chr9 77098728 77098842 -65172602 - L1MA7 LINE L1 0 6291 6175 1671 145 3 109 chr9 77098842 77098980 -65172464 + AluJb SINE Alu 1 85 -227 2098 137 0 7 chr9 77098980 77099273 -65172171 + AluSx SINE Alu 1 291 -21 1671 145 3 109 chr9 77099273 77099465 -65171979 + AluJb SINE Alu 85 296 -16 2278 119 8 43 chr9 77099465 77099746 -65171698 - L1MA7 LINE L1 -116 6175 5910 2491 76 0 10 chr9 77099843 77100157 -65171287 + AluY SINE Alu 1 311 0 718 184 8 0 chr9 77100864 77100989 -65170455 + FLAM_A SINE Alu 14 139 -3 268 287 84 84 chr9 77100996 77101139 -65170305 + MIR3 SINE MIR 28 170 -38 1072 82 12 16 chr9 77102292 77102534 -65168910 + (GAAA)n Simple_repeat Simple_repeat 1 242 0 1096 113 0 0 chr9 77102591 77102732 -65168712 - AluJb SINE Alu -12 300 160 297 123 356 0 chr9 77102747 77102820 -65168624 - MER41A-int LTR ERV1 -7657 99 1 4082 109 4 0 chr9 77102820 77103371 -65168073 - MER41A LTR ERV1 0 554 2 1119 101 0 7 chr9 77103371 77103520 -65167924 - AluJo SINE Alu -163 149 2 215 222 0 19 chr9 77103645 77103699 -65167745 - MIR SINE MIR -124 138 86 970 145 151 32 chr9 77103699 77103885 -65167559 + AluJb SINE Alu 86 293 -19 513 247 13 51 chr9 77104421 77104579 -65166865 - Charlie8 DNA MER1_type -2216 201 50 347 182 208 14 chr9 77105183 77105324 -65166120 - MIR SINE MIR -14 248 84 1694 170 11 14 chr9 77105347 77105629 -65165815 + AluSx SINE Alu 1 281 -31 2498 77 0 3 chr9 77106044 77106356 -65165088 + AluY SINE Alu 1 311 0 2215 120 7 0 chr9 77106549 77106857 -65164587 - AluSx SINE Alu -2 310 1 1979 120 39 7 chr9 77108099 77108383 -65163061 + AluSx SINE Alu 1 293 -19 325 328 33 28 chr9 77108532 77108712 -65162732 + MIR3 SINE MIR 25 205 -3 980 118 7 0 chr9 77109077 77109212 -65162232 + AluJo SINE Alu 1 136 -176 339 260 48 19 chr9 77111130 77111234 -65160210 - MIR SINE MIR -74 188 82 1588 201 33 21 chr9 77111501 77111830 -65159614 - MER58B DNA MER1_type -3 338 6 2036 140 0 0 chr9 77111916 77112244 -65159200 + AluSx SINE Alu 1 328 0 1755 133 0 66 chr9 77112266 77112568 -65158876 + AluJb SINE Alu 13 294 -18 2153 161 70 32 chr9 77113429 77113871 -65157573 + LTR2B LTR ERV1 32 490 0 398 331 91 74 chr9 77114062 77114505 -65156939 + L2 LINE L2 2785 3232 -40 365 305 42 17 chr9 77114807 77114925 -65156519 - L2 LINE L2 -3 3310 3190 2146 214 91 57 chr9 77114925 77115517 -65155927 + LTR9 LTR ERV1 1 612 0 261 264 19 57 chr9 77115540 77115646 -65155798 - MIR SINE MIR -5 257 156 276 348 74 7 chr9 77115885 77116020 -65155424 - MIR3 SINE MIR -61 147 4 2293 109 3 0 chr9 77116582 77116886 -65154558 + AluSq SINE Alu 1 305 -8 270 243 157 0 chr9 77117135 77117205 -65154239 + L2 LINE L2 3186 3266 -6 255 176 0 39 chr9 77117252 77117303 -65154141 - MLT1J LTR MaLR -352 159 111 * 333 213 0 27 chr9 77117300 77117375 -65154069 - MLT1L LTR MaLR -420 195 123 2058 128 7 3 chr9 77117852 77118149 -65153295 + AluJb SINE Alu 1 298 -14 886 186 6 35 chr9 77118150 77118322 -65153122 + AluJo/FRAM SINE Alu 136 302 -10 291 325 82 29 chr9 77118332 77118575 -65152869 - MLT1K LTR MaLR -100 488 233 1202 211 35 48 chr9 77118580 77118812 -65152632 + MER63 DNA MER1_type 692 920 -141 2660 43 0 0 chr9 77118812 77119116 -65152328 - AluY SINE Alu -7 304 1 1202 211 35 48 chr9 77119116 77119196 -65152248 + MER63 DNA MER1_type 920 1000 -61 434 167 0 0 chr9 77119196 77119268 -65152176 + AluS SINE Alu 5 76 -234 1209 144 64 0 chr9 77119553 77119741 -65151703 - AluSx SINE Alu -112 200 1 2492 78 3 0 chr9 77119852 77120161 -65151283 - AluSq SINE Alu -3 310 1 1405 213 183 7 chr9 77120164 77120573 -65150871 - MLT1E2 LTR MaLR -8 618 138 2183 142 0 0 chr9 77121687 77121996 -65149448 + AluSx SINE Alu 1 309 -3 1891 168 0 0 chr9 77122006 77122297 -65149147 + AluSx SINE Alu 1 291 -21 315 104 0 0 chr9 77122298 77122346 -65149098 + (CA)n Simple_repeat Simple_repeat 2 49 0 447 68 0 0 chr9 77122346 77122405 -65149039 + (TA)n Simple_repeat Simple_repeat 1 59 0 2008 166 0 0 chr9 77122413 77122714 -65148730 + AluSx SINE Alu 1 301 -11 399 271 145 22 chr9 77122781 77123005 -65148439 + MIR SINE MIR 10 256 -6 379 223 43 79 chr9 77124800 77124879 -65146565 - MER45A DNA AcHobo -1447 134 61 1939 163 0 0 chr9 77124879 77125173 -65146271 + AluJb SINE Alu 1 294 -18 379 223 43 79 chr9 77125173 77125232 -65146212 - MER45A DNA AcHobo -1520 61 1 252 0 0 0 chr9 77125824 77125852 -65145592 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2013 80 0 4 chr9 77126346 77126617 -65144827 + AluSp SINE Alu 37 306 0 1801 177 3 7 chr9 77126715 77127009 -65144435 + AluJo SINE Alu 1 293 -19 342 257 59 10 chr9 77127102 77127203 -65144241 + L2 LINE L2 3193 3298 -15 620 254 6 51 chr9 77127346 77127523 -65143921 - MIR SINE MIR 0 262 94 311 180 166 29 chr9 77127615 77127754 -65143690 + MER112 DNA MER1_type 8 165 -95 1832 166 6 22 chr9 77129428 77129741 -65141703 - AluJb SINE Alu -4 308 1 1279 194 3 119 chr9 77130668 77131004 -65140440 + AluJb SINE Alu 2 298 -4 274 186 0 0 chr9 77131387 77131430 -65140014 + MER3 DNA MER1_type 44 86 -123 * 281 139 23 0 chr9 77131392 77131435 -65140009 - Charlie5 DNA MER1_type -2404 208 165 2147 110 0 0 chr9 77131641 77131922 -65139522 + AluSx SINE Alu 1 281 -31 5093 211 35 56 chr9 77132025 77132090 -65139354 + L1MC1 LINE L1 3552 3617 -2529 2112 139 0 10 chr9 77132090 77132400 -65139044 + AluSx SINE Alu 1 307 -5 5093 211 35 56 chr9 77132400 77133811 -65137633 + L1MC1 LINE L1 3617 4997 -1149 479 148 69 0 chr9 77133919 77134020 -65137424 + L1MC1 LINE L1 4980 5087 -1059 1876 177 0 0 chr9 77134021 77134320 -65137124 - AluSx SINE Alu -13 299 1 252 143 0 0 chr9 77134320 77134362 -65137082 + L1MC1 LINE L1 5274 5315 -1018 1262 95 0 0 chr9 77134364 77134522 -65136922 - AluSg/x SINE Alu -16 296 139 1935 141 36 13 chr9 77134552 77134857 -65136587 - AluJo SINE Alu 0 312 1 5893 146 39 8 chr9 77134862 77135761 -65135683 + L1MC1 LINE L1 5315 6248 -85 261 0 0 0 chr9 77135761 77135790 -65135654 + (TG)n Simple_repeat Simple_repeat 2 30 0 5893 146 39 8 chr9 77135790 77135877 -65135567 + L1MC1 LINE L1 6248 6331 -2 2067 122 7 10 chr9 77135960 77136256 -65135188 + AluSx SINE Alu 1 295 -17 528 315 67 20 chr9 77136331 77136624 -65134820 - MLT1H1 LTR MaLR -246 349 6 22 70 0 0 chr9 77136783 77136826 -65134618 + AT_rich Low_complexity Low_complexity 1 43 0 220 205 0 0 chr9 77137259 77137298 -65134146 + CT-rich Low_complexity Low_complexity 3 41 0 2319 95 0 0 chr9 77138101 77138395 -65133049 + AluSg SINE Alu 1 294 -16 1823 206 20 3 chr9 77138799 77139165 -65132279 + MER34B LTR ERV1 12 356 -209 963 140 0 0 chr9 77139166 77139309 -65132135 - AluJb SINE Alu -12 300 158 1076 167 38 9 chr9 77139331 77139541 -65131903 + MER34B LTR ERV1 350 565 0 959 208 0 0 chr9 77139653 77139839 -65131605 + FAM SINE Alu 1 54 0 307 316 86 0 chr9 77139994 77140133 -65131311 - MIR SINE MIR -1 261 111 324 125 0 0 chr9 77140822 77140870 -65130574 - L1MC2 LINE L1 -3 6341 6294 2747 110 26 21 chr9 77140877 77141305 -65130139 - L1MC2 LINE L1 -227 6117 5688 196 29 0 57 chr9 77141305 77141340 -65130104 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 256 33 0 0 chr9 77142344 77142374 -65129070 + LTR6A LTR ERV1 73 102 -462 2200 151 95 1 chr9 77142468 77142857 -65128587 - L1MC2 LINE L1 -658 5686 5263 1978 111 0 0 chr9 77143373 77143634 -65127810 + AluSx SINE Alu 39 299 -13 2019 139 0 0 chr9 77143791 77144079 -65127365 - AluSx SINE Alu -24 288 1 887 194 6 39 chr9 77144081 77144239 -65127205 - AluJo SINE Alu -18 294 141 1811 132 14 4 chr9 77144239 77144519 -65126925 - AluSx SINE Alu -29 283 1 887 194 6 39 chr9 77144519 77144540 -65126904 - AluJo SINE Alu -171 141 121 273 193 12 24 chr9 77144541 77144624 -65126820 + T-rich Low_complexity Low_complexity 3 84 0 830 159 0 8 chr9 77144638 77144770 -65126674 - AluJo SINE Alu -180 132 2 1247 216 62 54 chr9 77145034 77145405 -65126039 + MER34 LTR ERV1 27 400 -142 261 137 14 55 chr9 77145405 77145478 -65125966 + CT-rich Low_complexity Low_complexity 5 74 0 820 174 0 0 chr9 77145494 77145638 -65125806 - FRAM SINE Alu -32 144 1 29 0 0 0 chr9 77145780 77145809 -65125635 + AT_rich Low_complexity Low_complexity 1 29 0 250 224 0 0 chr9 77146153 77146202 -65125242 - L2 LINE L2 -249 3064 3016 207 137 0 59 chr9 77146485 77146536 -65124908 + (CGGGG)n Simple_repeat Simple_repeat 5 52 0 2489 72 0 0 chr9 77147572 77147878 -65123566 + AluSx SINE Alu 1 306 -6 1522 200 23 13 chr9 77148154 77148454 -65122990 - AluJo SINE Alu -9 303 1 1690 110 67 14 chr9 77148779 77148944 -65122500 - L1M4c LINE L1 -3949 2433 2278 189 0 0 0 chr9 77148944 77148965 -65122479 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1690 110 67 14 chr9 77148965 77149112 -65122332 - L1M4c LINE L1 -4104 2278 2106 934 179 31 0 chr9 77149127 77149289 -65122155 - FAM SINE Alu -11 174 8 616 147 23 23 chr9 77149302 77149431 -65122013 - L1M4c LINE L1 -4331 2053 1925 779 252 72 65 chr9 77150279 77150394 -65121050 - L1MC2 LINE L1 -881 5265 5152 1757 185 7 3 chr9 77150394 77150696 -65120748 - AluJb SINE Alu -9 303 1 779 252 72 65 chr9 77150696 77151008 -65120436 - L1MC2 LINE L1 -994 5152 4835 559 224 78 24 chr9 77151047 77151299 -65120145 - L1MC2 LINE L1 -1398 4748 4414 2056 113 0 33 chr9 77151300 77151601 -65119843 - AluSx SINE Alu -21 291 1 254 229 272 23 chr9 77151687 77151833 -65119611 - MIR SINE MIR -33 175 9 731 204 149 0 chr9 77152621 77152802 -65118642 - MIR SINE MIR -18 244 37 1996 104 14 4 chr9 77153062 77153361 -65118083 - AluSq SINE Alu 0 302 1 181 244 0 24 chr9 77153412 77153453 -65117991 - L2 LINE L2 -12 3301 3262 24 53 0 0 chr9 77153879 77153917 -65117527 + AT_rich Low_complexity Low_complexity 1 38 0 1026 114 0 0 chr9 77154077 77154209 -65117235 + FLAM_C SINE Alu 1 132 -1 25 0 0 0 chr9 77154710 77154735 -65116709 + AT_rich Low_complexity Low_complexity 1 25 0 386 222 61 158 chr9 77156134 77156277 -65115167 + L1MEd LINE L1 755 856 -5263 986 208 0 6 chr9 77156277 77156436 -65115008 + FAM SINE Alu 1 158 -17 386 222 61 158 chr9 77156436 77156589 -65114855 + L1MEd LINE L1 856 1022 -5097 556 282 76 50 chr9 77156673 77156928 -65114516 + ERVL LTR ERVL 2069 2375 -3389 980 220 12 0 chr9 77156928 77157101 -65114343 + FAM SINE Alu 1 175 0 556 282 76 50 chr9 77157101 77157234 -65114210 + ERVL LTR ERVL 2375 2503 -3261 495 200 138 19 chr9 77157351 77157511 -65113933 + L1MEd LINE L1 2909 3087 -3042 521 193 9 53 chr9 77157574 77157682 -65113762 + MER1B DNA MER1_type 3 105 -192 549 149 97 26 chr9 77157682 77157796 -65113648 + THE1C LTR MaLR 1 122 -253 * 651 104 31 0 chr9 77157787 77157883 -65113561 + THE1C LTR MaLR 277 375 0 * 1388 134 76 0 chr9 77157883 77158105 -65113339 + MER1B DNA MER1_type 101 339 0 1852 113 87 11 chr9 77158287 77158422 -65113022 + AluSx SINE Alu 1 124 -188 2281 69 0 46 chr9 77158422 77158766 -65112678 + AluY SINE Alu 1 311 0 1852 113 87 11 chr9 77158766 77158905 -65112539 + AluSx SINE Alu 124 296 -16 760 258 81 50 chr9 77158908 77159304 -65112140 + HAL1 LINE L1 2100 2507 0 1947 129 38 11 chr9 77159329 77159616 -65111828 + AluSx SINE Alu 1 295 -17 338 67 0 0 chr9 77159738 77159783 -65111661 - L1MA8 LINE L1 -127 6164 6120 256 79 0 0 chr9 77159794 77159832 -65111612 - Alu SINE Alu -6 302 265 503 130 13 0 chr9 77259870 77259947 -65011497 - AluJ/FLAM SINE Alu -233 79 2 1672 174 7 7 chr9 77260025 77260313 -65011131 + AluJo SINE Alu 1 288 -24 1630 170 44 3 chr9 77260918 77261212 -65010232 - AluJo SINE Alu -6 306 1 373 266 75 48 chr9 77261233 77261421 -65010023 - L2 LINE L2 -1 3312 3120 2640 171 77 21 chr9 77261492 77262057 -65009387 + LTR48B LTR ERV1 1 597 -47 3623 121 3 50 chr9 77262057 77262659 -65008785 + MER4B LTR ERV1 1 574 -36 233 186 70 58 chr9 77263158 77263244 -65008200 + MER34 LTR ERV1 450 536 -6 2166 116 10 3 chr9 77263531 77263823 -65007621 - AluSx SINE Alu -18 294 1 2071 174 161 60 chr9 77263930 77264643 -65006801 - LTR1B LTR ERV1 0 785 1 403 183 106 99 chr9 77265015 77265157 -65006287 - MER34 LTR ERV1 -5 537 450 485 149 0 170 chr9 77265158 77265243 -65006201 + L1MCa LINE L1 595 648 -5778 1750 197 7 0 chr9 77265243 77265537 -65005907 + AluJb SINE Alu 1 296 -16 485 149 0 170 chr9 77265537 77265592 -65005852 + L1MCa LINE L1 648 711 -5715 758 190 10 62 chr9 77265592 77265787 -65005657 + MER41B LTR ERV1 1 185 -450 1958 141 10 13 chr9 77266349 77266654 -65004790 + AluSx SINE Alu 1 304 -8 1955 146 3 19 chr9 77266721 77266927 -65004517 - AluJb SINE Alu -7 305 104 2191 119 46 32 chr9 77266927 77267297 -65004147 - THE1C LTR MaLR 0 375 1 1955 146 3 19 chr9 77267297 77267399 -65004045 - AluJb SINE Alu -208 104 2 1943 174 5 47 chr9 77267446 77267562 -65003882 + MER47A DNA MER2_type 2 121 -2202 1994 149 0 34 chr9 77267562 77267884 -65003560 - AluJb SINE Alu -1 311 1 1943 174 5 47 chr9 77267884 77268147 -65003297 + MER47A DNA MER2_type 121 365 -1 1674 170 131 28 chr9 77268233 77268592 -65002852 + MSTD LTR MaLR 1 396 0 1020 215 101 8 chr9 77269286 77269523 -65001921 - LTR41 LTR ERVL -514 259 1 2405 93 3 0 chr9 77269889 77270191 -65001253 + AluY SINE Alu 1 303 -8 2332 96 0 0 chr9 77270260 77270553 -65000891 - AluSq SINE Alu -20 293 1 4356 120 7 65 chr9 77270609 77271342 -65000102 - LTR8 LTR ERV1 0 691 2 1791 167 0 0 chr9 77271343 77271618 -64999826 + AluJb SINE Alu 28 302 -10 2165 108 3 46 chr9 77271645 77271968 -64999476 + AluSq SINE Alu 1 309 -4 1367 177 118 0 chr9 77271975 77272229 -64999215 + MLT1B LTR MaLR 1 284 -106 1777 153 60 0 chr9 77272229 77272510 -64998934 - AluJb SINE Alu -14 298 1 384 257 134 11 chr9 77272517 77272704 -64998740 + L1ME LINE L1 5527 5736 -385 1801 150 18 0 chr9 77272755 77273041 -64998403 + AluSx SINE Alu 21 311 -1 2224 59 0 11 chr9 77273058 77273329 -64998115 + AluY SINE Alu 44 311 0 1741 140 17 3 chr9 77273629 77273921 -64997523 + MER41B LTR ERV1 339 634 -1 7973 163 84 32 chr9 77273922 77274796 -64996648 + L1MCa LINE L1 708 1535 -4891 5358 187 9 1 chr9 77274796 77275690 -64995754 + MER54A LTR ERVL 1 901 0 7973 163 84 32 chr9 77275690 77276282 -64995162 + L1MCa LINE L1 1535 2095 -4331 2293 115 7 0 chr9 77276282 77276586 -64994858 + AluSx SINE Alu 1 306 -6 7973 163 84 32 chr9 77276586 77276655 -64994789 + L1MCa LINE L1 2095 2159 -4267 2013 146 0 34 chr9 77276655 77276978 -64994466 + AluJo SINE Alu 1 312 0 7973 163 84 32 chr9 77276978 77277651 -64993793 + L1MCa LINE L1 2159 3038 -3388 804 145 0 59 chr9 77277662 77277814 -64993630 - FLAM_C SINE Alu 0 143 1 27 0 0 0 chr9 77277819 77277846 -64993598 + AT_rich Low_complexity Low_complexity 1 27 0 2048 136 3 0 chr9 77277847 77278134 -64993310 - AluSq SINE Alu -25 288 1 2234 217 37 62 chr9 77278135 77278538 -64992906 + L1MCa LINE L1 3035 3410 -3016 1955 140 0 0 chr9 77278538 77278817 -64992627 + AluSx SINE Alu 1 279 -33 2234 217 37 62 chr9 77278817 77279218 -64992226 + L1MCa LINE L1 3410 3819 -2607 1128 187 0 20 chr9 77279371 77279569 -64991875 - AluJo SINE Alu -116 196 3 2003 147 0 7 chr9 77279578 77279871 -64991573 - AluSx SINE Alu -21 291 1 307 240 240 0 chr9 77279892 77280013 -64991431 + L1ME4a LINE L1 5952 6101 -20 2085 227 93 57 chr9 77280068 77280713 -64990731 - MER21B LTR ERV1 -121 742 69 2027 150 7 0 chr9 77280713 77281020 -64990424 + AluSq SINE Alu 1 309 -4 2085 227 93 57 chr9 77281020 77281071 -64990373 - MER21B LTR ERV1 -794 69 21 1873 165 10 0 chr9 77281224 77281521 -64989923 - AluJb SINE Alu -8 304 5 3588 198 77 80 chr9 77281551 77282663 -64988781 + LTR28 LTR ERV1 1 634 -2 411 208 200 24 chr9 77282893 77283018 -64988426 - LTR24 LTR ERV1 -349 118 1 679 176 0 0 chr9 77283019 77283127 -64988317 + Tigger7 DNA MER2_type 2480 2587 0 4346 106 78 58 chr9 77283219 77284276 -64987168 + MER11A LTR ERVK 1 1262 -4 1609 163 64 69 chr9 77284305 77284697 -64986747 - MLT1B LTR MaLR 0 390 1 1933 96 15 4 chr9 77284837 77285097 -64986347 - AluSx SINE Alu -8 304 42 234 160 0 60 chr9 77285283 77285309 -64986135 - MER103 DNA DNA -41 125 102 1835 122 0 39 chr9 77285309 77285588 -64985856 + AluSx SINE Alu 37 304 -8 234 160 0 60 chr9 77285588 77285611 -64985833 - MER103 DNA DNA -64 102 79 2155 61 0 0 chr9 77285824 77286088 -64985356 + L1PA5 LINE L1 5891 6154 0 4220 87 4 2 chr9 77286133 77286686 -64984758 + MER41A LTR ERV1 1 554 0 732 216 54 128 chr9 77286703 77287017 -64984427 - MER110A LTR ERV1 -56 412 76 3627 116 54 32 chr9 77287017 77287612 -64983832 - MER4B LTR ERV1 -2 608 1 732 216 54 128 chr9 77287612 77287669 -64983775 - MER110A LTR ERV1 -392 76 71 1513 80 85 0 chr9 77287669 77287881 -64983563 + MER30 DNA MER1_type 1 230 0 732 216 54 128 chr9 77287881 77287916 -64983528 - MER110A LTR ERV1 -397 71 35 567 120 188 0 chr9 77288062 77288179 -64983265 + MER5A DNA MER1_type 1 139 -50 2203 123 7 0 chr9 77288182 77288492 -64982952 - AluSx SINE Alu 0 312 1 2415 84 10 3 chr9 77288785 77289094 -64982350 + AluSq SINE Alu 1 311 -2 565 167 10 162 chr9 77289694 77289752 -64981692 + MER5B DNA MER1_type 8 73 -105 2319 101 0 3 chr9 77289752 77290049 -64981395 + AluSg SINE Alu 2 297 -13 565 167 10 162 chr9 77290049 77290116 -64981328 + MER5B DNA MER1_type 73 95 -83 2263 100 0 0 chr9 77290116 77290405 -64981039 - AluSx SINE Alu -15 297 9 565 167 10 162 chr9 77290405 77290476 -64980968 + MER5B DNA MER1_type 95 175 -3 1482 167 6 76 chr9 77291044 77291361 -64980083 + MLT1D LTR MaLR 211 505 0 2344 103 0 0 chr9 77291366 77291666 -64979778 + AluSx SINE Alu 1 300 -12 266 208 14 42 chr9 77291782 77291854 -64979590 - L2 LINE L2 -2 3311 3242 252 198 0 86 chr9 77291875 77291956 -64979488 + AluSp SINE Alu 121 194 -109 329 261 11 0 chr9 77291959 77292047 -64979397 - L2 LINE L2 -705 2609 2521 874 113 0 0 chr9 77292047 77292162 -64979282 + AluSx SINE Alu 1 115 -198 3971 85 0 4 chr9 77292166 77292674 -64978770 - MER9 LTR ERVK -5 506 1 1235 107 65 0 chr9 77292675 77292843 -64978601 + AluSx SINE Alu 108 286 -24 891 94 0 0 chr9 77292846 77292973 -64978471 + (GGAA)n Simple_repeat Simple_repeat 3 129 0 1573 259 89 20 chr9 77292973 77293667 -64977777 - L2 LINE L2 -793 2521 1780 554 260 16 0 chr9 77293888 77294015 -64977429 + MER58B DNA MER1_type 199 327 -14 574 211 117 69 chr9 77294017 77294264 -64977180 - L2 LINE L2 -1537 1777 1519 1434 179 15 29 chr9 77294354 77294627 -64976817 - AluSx SINE Alu -3 309 41 1649 158 10 45 chr9 77294667 77294959 -64976485 + AluJo SINE Alu 1 282 -30 353 223 42 38 chr9 77294983 77295112 -64976332 + L1MC4a LINE L1 5471 5602 -572 841 278 119 3 chr9 77295486 77295781 -64975663 + L1MC4a LINE L1 5579 5907 -1901 1926 153 11 0 chr9 77295848 77296135 -64975309 + AluJb SINE Alu 1 290 -22 1669 149 11 22 chr9 77296240 77296516 -64974928 - AluJb SINE Alu -39 273 1 21 0 0 0 chr9 77296687 77296708 -64974736 + AT_rich Low_complexity Low_complexity 1 21 0 2029 154 0 0 chr9 77297141 77297447 -64973997 + AluJb SINE Alu 1 306 -6 1194 206 84 42 chr9 77297451 77297830 -64973614 - L1ME2 LINE L1 -9 6155 5761 527 219 19 87 chr9 77297995 77298017 -64973427 + MER34 LTR ERV1 6 28 -537 1263 184 129 29 chr9 77298017 77298295 -64973149 + AluJo SINE Alu 1 306 -6 527 219 19 87 chr9 77298295 77298741 -64972703 + MER34 LTR ERV1 28 451 -114 2104 112 40 3 chr9 77298748 77299044 -64972400 - AluSx SINE Alu -5 307 1 759 204 46 46 chr9 77299086 77299346 -64972098 + LTR37A LTR ERV1 167 426 0 524 263 126 7 chr9 77299449 77299716 -64971728 - L1ME2 LINE L1 -729 5513 5294 422 214 0 58 chr9 77300179 77300282 -64971162 - MER92B LTR ERV1 -9 627 531 320 263 0 13 chr9 77300252 77300328 -64971116 - MER92B LTR ERV1 -559 77 3 * 1002 123 26 7 chr9 77300612 77300767 -64970677 + MLT1B LTR MaLR 233 390 0 378 177 109 170 chr9 77300769 77300921 -64970523 - MER92B-int LTR ERV1 -2881 2055 1928 2313 107 0 22 chr9 77300921 77301240 -64970204 - AluSx SINE Alu 0 312 1 378 177 109 170 chr9 77301240 77301381 -64970063 - MER92B-int LTR ERV1 -3008 1928 1780 2357 129 86 5 chr9 77301381 77301777 -64969667 - MSTA LTR MaLR 0 428 1 1375 225 18 24 chr9 77301860 77302189 -64969255 + LTR53 LTR ERVL 193 519 0 1085 256 108 53 chr9 77302193 77302759 -64968685 - MER92B-int LTR ERV1 -4247 689 93 878 155 10 97 chr9 77302860 77303066 -64968378 - MER92B LTR ERV1 0 636 449 2310 90 19 13 chr9 77303070 77303381 -64968063 + AluSq SINE Alu 1 313 0 1234 129 0 17 chr9 77303685 77303863 -64967581 + AluSc SINE Alu 103 277 -32 195 42 0 0 chr9 77303863 77303887 -64967557 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 545 221 76 29 chr9 77304914 77305086 -64966358 + MIR SINE MIR 69 248 -14 981 65 181 0 chr9 77305719 77305857 -64965587 + AluSg/x SINE Alu 136 298 -14 1938 163 13 3 chr9 77306675 77306975 -64964469 - AluJb SINE Alu -9 303 1 230 252 67 42 chr9 77307179 77307298 -64964146 + MIR SINE MIR 141 262 0 2257 125 0 0 chr9 77307748 77308059 -64963385 + AluSx SINE Alu 2 312 0 2047 133 3 22 chr9 77308483 77308800 -64962644 - AluSx SINE Alu -1 311 1 606 165 33 25 chr9 77308826 77308947 -64962497 + AluJb SINE Alu 175 296 -16 1175 121 0 0 chr9 77309469 77309626 -64961818 + AluSq SINE Alu 1 157 -156 579 58 0 0 chr9 77310021 77310108 -64961336 - L1MA7 LINE L1 -4 6287 6201 2113 142 3 3 chr9 77310170 77310473 -64960971 - AluJb SINE Alu -9 303 1 27 49 0 0 chr9 77310589 77310630 -64960814 + AT_rich Low_complexity Low_complexity 1 41 0 242 210 0 74 chr9 77310755 77310804 -64960640 - Charlie7 DNA MER1_type -57 2555 2513 6352 47 29 3 chr9 77310804 77311564 -64959880 - LTR17 LTR ERV1 0 780 1 242 210 0 74 chr9 77311564 77311595 -64959849 - Charlie7 DNA MER1_type -99 2513 2481 1042 289 138 13 chr9 77311639 77312261 -64959183 - Charlie7 DNA MER1_type -440 2172 1473 229 220 0 0 chr9 77312418 77312468 -64958976 - Charlie7 DNA MER1_type -1134 1478 1429 2158 103 43 7 chr9 77312597 77312897 -64958547 + AluSx SINE Alu 1 311 -1 642 254 17 12 chr9 77313174 77313347 -64958097 - MER5B DNA MER1_type -1 177 4 2424 81 0 0 chr9 77313453 77313750 -64957694 + AluY SINE Alu 1 297 -14 1448 181 30 23 chr9 77314193 77314492 -64956952 + AluJo SINE Alu 1 301 -11 477 282 141 59 chr9 77314546 77315142 -64956302 + L2 LINE L2 2022 2666 -648 1747 117 135 0 chr9 77315371 77315637 -64955807 + AluSx SINE Alu 1 302 0 623 105 0 0 chr9 77315553 77315639 -64955805 + AluSg/x SINE Alu 216 301 -8 927 152 49 0 chr9 77315650 77315814 -64955630 + FAM SINE Alu 1 172 -3 934 177 19 0 chr9 77316094 77316252 -64955192 + FAM SINE Alu 10 170 -15 1948 162 0 3 chr9 77316278 77316581 -64954863 + AluJb SINE Alu 1 302 -10 30 27 0 0 chr9 77316719 77316756 -64954688 + AT_rich Low_complexity Low_complexity 1 37 0 757 144 0 8 chr9 77316763 77316881 -64954563 - FLAM_C SINE Alu -16 117 1 418 299 44 91 chr9 77316882 77317156 -64954288 + L2 LINE L2 3009 3269 -3 526 153 359 0 chr9 77317423 77317554 -64953890 + MER45A DNA AcHobo 1 178 0 1087 181 34 5 chr9 77318184 77318389 -64953055 + MER20 DNA MER1_type 4 214 -5 2072 127 3 7 chr9 77318896 77319187 -64952257 - AluSx SINE Alu -20 292 3 2278 64 28 3 chr9 77319201 77319484 -64951960 - AluSg1 SINE Alu -19 290 1 189 0 0 0 chr9 77319579 77319600 -64951844 + (A)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr9 77321613 77321635 -64949809 + GC_rich Low_complexity Low_complexity 1 22 0 2747 33 0 0 chr9 77322313 77322619 -64948825 + AluY SINE Alu 1 306 -5 342 207 178 136 chr9 77322697 77322939 -64948505 - MER34 LTR ERV1 0 542 393 381 196 0 14 chr9 77322956 77323063 -64948381 + MER31-int LTR ERV1 1754 2408 -2463 22 35 0 0 chr9 77323064 77323093 -64948351 + AT_rich Low_complexity Low_complexity 1 29 0 312 213 81 59 chr9 77323098 77323234 -64948210 + MER31-int LTR ERV1 1700 1838 -3098 2188 125 0 0 chr9 77323246 77323541 -64947903 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr9 77323541 77323565 -64947879 + AT_rich Low_complexity Low_complexity 1 24 0 832 184 0 27 chr9 77323576 77323723 -64947721 + AluJo SINE Alu 9 151 -161 1832 161 3 10 chr9 77323806 77324104 -64947340 - AluJb SINE Alu -16 296 1 732 204 214 15 chr9 77324186 77324727 -64946717 - LTR50 LTR ERVL 0 795 1 2158 119 0 25 chr9 77324892 77325212 -64946232 + AluSx SINE Alu 1 312 0 1259 238 59 72 chr9 77325225 77325575 -64945869 + MER92B LTR ERV1 7 351 -285 1992 133 28 69 chr9 77325575 77325649 -64945795 - THE1C LTR MaLR 0 375 300 2470 77 7 7 chr9 77325649 77325959 -64945485 + AluSg SINE Alu 1 310 0 1992 133 28 69 chr9 77325959 77326275 -64945169 - THE1C LTR MaLR -75 300 1 1259 238 59 72 chr9 77326275 77326382 -64945062 + MER92B LTR ERV1 351 458 -178 2552 77 3 3 chr9 77326383 77326696 -64944748 - AluSp SINE Alu 0 313 1 722 127 30 45 chr9 77326700 77326834 -64944610 - L1PA15 LINE L1 0 6165 6034 708 253 43 57 chr9 77326838 77327119 -64944325 - L1ME LINE L1 -352 5818 5542 695 301 58 41 chr9 77327122 77327403 -64944041 - MLT1H LTR MaLR 0 549 186 2499 68 7 0 chr9 77327403 77327710 -64943734 - AluY SINE Alu -2 309 1 695 301 58 41 chr9 77327710 77327900 -64943544 - MLT1H LTR MaLR -363 186 1 452 250 29 58 chr9 77327901 77328073 -64943371 - L1ME LINE L1 -2269 5539 5373 453 129 29 0 chr9 77328088 77328158 -64943286 - AluJ/FRAM SINE Alu -20 292 221 1793 147 3 27 chr9 77328291 77328583 -64942861 - AluJo SINE Alu -27 285 1 225 200 75 0 chr9 77328586 77328666 -64942778 - Charlie5 DNA MER1_type -88 2524 2439 * 898 215 86 4 chr9 77328656 77328889 -64942555 - Charlie5 DNA MER1_type -2342 270 19 377 206 91 96 chr9 77328907 77329035 -64942409 - HAL1 LINE L1 -111 2396 2268 1869 163 0 38 chr9 77329035 77329354 -64942090 - AluJo SINE Alu -5 307 1 377 206 91 96 chr9 77329354 77329434 -64942010 - HAL1 LINE L1 -239 2268 2189 612 183 0 87 chr9 77329484 77329610 -64941834 - FLAM_A SINE Alu -18 115 1 1425 193 123 17 chr9 77329614 77329730 -64941714 - Charlie1b DNA MER1_type -2249 512 410 1393 175 76 46 chr9 77329730 77330033 -64941411 + AluJo SINE Alu 1 312 0 1425 193 123 17 chr9 77330033 77330331 -64941113 - Charlie1b DNA MER1_type -2351 410 54 388 262 69 125 chr9 77330336 77330418 -64941026 - HAL1 LINE L1 -327 2180 2095 2302 107 0 0 chr9 77330418 77330718 -64940726 - AluSg SINE Alu -10 300 1 388 262 69 125 chr9 77330718 77330808 -64940636 - HAL1 LINE L1 -412 2095 2002 1875 130 0 4 chr9 77330808 77331077 -64940367 - AluSx SINE Alu -16 296 29 388 262 69 125 chr9 77331077 77331368 -64940076 - HAL1 LINE L1 -505 2002 1742 2129 119 7 10 chr9 77331368 77331663 -64939781 - AluSx SINE Alu -18 294 1 713 292 62 0 chr9 77331691 77331900 -64939544 + MIR SINE MIR 21 242 -20 665 229 104 11 chr9 77331949 77332132 -64939312 - HAL1 LINE L1 -788 1719 1520 503 244 78 11 chr9 77332144 77332324 -64939120 - HAL1 LINE L1 -2250 257 66 862 135 0 8 chr9 77332425 77332551 -64938893 + AluSq/x SINE Alu 1 125 -187 314 305 126 0 chr9 77333193 77333367 -64938077 - HAL1 LINE L1 -582 1925 1730 1837 156 3 3 chr9 77333384 77333666 -64937778 - AluJo SINE Alu -27 285 4 1027 222 36 89 chr9 77333721 77334124 -64937320 - HAL1 LINE L1 -1012 1495 1123 1955 153 3 0 chr9 77334124 77334419 -64937025 - AluSx SINE Alu -16 296 1 1027 222 36 89 chr9 77334419 77334519 -64936925 - HAL1 LINE L1 -1384 1123 1019 983 242 67 20 chr9 77334519 77334923 -64936521 - MLT1G LTR MaLR 0 590 95 747 126 0 0 chr9 77334923 77335026 -64936418 - LTR12 LTR ERV1 0 714 612 323 242 10 10 chr9 77335026 77335125 -64936319 - LTR30 LTR ERV1 -80 642 544 1380 90 124 5 chr9 77335125 77335326 -64936118 - LTR12 LTR ERV1 -437 277 53 270 231 0 0 chr9 77335326 77335378 -64936066 - LTR30 LTR ERV1 -670 52 1 5540 106 14 13 chr9 77335378 77336173 -64935271 - HERV9 LTR ERV1 0 8399 7604 1130 99 0 0 chr9 77336152 77336313 -64935131 - Harlequin LTR ERV1 -5156 1740 1580 * 897 175 81 0 chr9 77336286 77336446 -64934998 - Harlequin LTR ERV1 -3380 4405 4233 * 653 61 61 40 chr9 77336443 77336542 -64934902 - Harlequin LTR ERV1 -5353 1543 1443 * 1919 103 96 64 chr9 77336523 77336942 -64934502 - Harlequin LTR ERV1 -5623 1273 842 * 6666 93 0 10 chr9 77336911 77337815 -64933629 - Harlequin LTR ERV1 -3425 4974 4080 20836 99 50 9 chr9 77337822 77340783 -64930661 - Harlequin LTR ERV1 -5260 3139 58 1620 102 44 0 chr9 77340803 77341028 -64930416 - LTR12 LTR ERV1 0 714 480 345 248 34 17 chr9 77341029 77341146 -64930298 - LTR30 LTR ERV1 -80 642 524 1250 80 296 0 chr9 77341146 77341345 -64930099 - LTR12 LTR ERV1 -456 258 1 386 290 46 0 chr9 77341347 77341478 -64929966 - MLT1G LTR MaLR -458 137 1 420 295 147 58 chr9 77341596 77342162 -64929282 - HAL1 LINE L1 -1780 727 112 2717 171 95 19 chr9 77343481 77344102 -64927342 - L1MB7 LINE L1 -7 6177 5510 2272 112 0 0 chr9 77344126 77344430 -64927014 + AluSq SINE Alu 1 304 -9 1230 265 99 19 chr9 77344486 77344773 -64926671 - L1M4c LINE L1 -4479 2167 1904 2205 128 0 0 chr9 77344773 77345063 -64926381 - AluSx SINE Alu -22 290 1 1230 265 99 19 chr9 77345063 77345304 -64926140 - L1M4c LINE L1 -4742 1904 1589 878 121 115 0 chr9 77345304 77345469 -64925975 - L1MC2 LINE L1 -10 6334 6151 1230 265 99 19 chr9 77345469 77345505 -64925939 - L1M4c LINE L1 -5057 1589 1557 240 33 0 0 chr9 77345533 77345563 -64925881 - L1MC2 LINE L1 -212 6132 6103 * 1690 161 106 53 chr9 77345557 77346009 -64925435 - L1M4c LINE L1 -5251 1291 816 270 0 0 0 chr9 77347788 77347818 -64923626 + (TC)n Simple_repeat Simple_repeat 2 31 0 189 94 0 0 chr9 77347819 77347851 -64923593 + (TA)n Simple_repeat Simple_repeat 1 32 0 311 250 115 0 chr9 77351226 77351330 -64920114 - L1MC4 LINE L1 0 8042 7927 23 33 0 0 chr9 77351363 77351393 -64920051 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr9 77351809 77351851 -64919593 + AT_rich Low_complexity Low_complexity 1 42 0 1278 140 183 23 chr9 77351930 77352187 -64919257 + AluSg SINE Alu 1 298 -2 1959 151 36 20 chr9 77352560 77352918 -64918526 - MER47A DNA MER2_type 0 366 3 2442 93 3 0 chr9 77354008 77354320 -64917124 - AluSp SINE Alu 0 313 1 23 0 0 0 chr9 77354777 77354800 -64916644 + AT_rich Low_complexity Low_complexity 1 23 0 336 133 216 10 chr9 77354906 77355007 -64916437 - L1MB8 LINE L1 -2 6182 6058 949 120 0 15 chr9 77355013 77355146 -64916298 - FLAM_C SINE Alu -12 131 1 359 137 15 13 chr9 77355146 77355224 -64916220 - L1MB8 LINE L1 -108 6070 5993 2912 7 0 0 chr9 77355239 77355547 -64915897 - AluYb8 SINE Alu -10 308 1 337 245 56 49 chr9 77356765 77356908 -64914536 - MIR SINE MIR -3 259 116 1820 158 0 24 chr9 77357027 77357319 -64914125 - AluJb SINE Alu -27 285 1 1872 85 0 8 chr9 77357348 77357584 -64913860 + AluSc SINE Alu 1 234 -75 4494 154 22 34 chr9 77357788 77358531 -64912913 - L1MA9 LINE L1 -185 6127 5376 796 199 12 41 chr9 77358531 77358702 -64912742 - FRAM SINE Alu 0 166 1 4494 154 22 34 chr9 77358702 77359103 -64912341 - L1MA9 LINE L1 -936 5376 4972 2230 113 10 0 chr9 77359103 77359403 -64912041 - AluSx SINE Alu -9 303 1 4494 154 22 34 chr9 77359403 77359865 -64911579 - L1MA9 LINE L1 -1340 4972 4540 * 5916 184 33 19 chr9 77359863 77361127 -64910317 - L1MA9 LINE L1 -1841 4305 3022 1938 175 3 0 chr9 77361127 77361436 -64910008 - AluJo SINE Alu -2 310 1 5916 184 33 19 chr9 77361436 77361451 -64909993 - L1MA9 LINE L1 -3124 3022 3009 246 350 0 12 chr9 77361527 77361607 -64909837 + MER81 DNA DNA 4 82 -32 1157 227 110 13 chr9 77362251 77362645 -64908799 - MER110A LTR ERV1 -5 463 67 559 258 12 18 chr9 77362760 77362927 -64908517 - MIR SINE MIR -16 246 81 220 340 66 0 chr9 77363500 77363606 -64907838 + L2 LINE L2 2931 3043 -229 2284 108 7 0 chr9 77363606 77363911 -64907533 - AluSx SINE Alu -5 307 1 560 93 0 82 chr9 77364058 77364155 -64907289 - L1MC1 LINE L1 0 6333 6245 1853 117 88 0 chr9 77364213 77364486 -64906958 - AluSx SINE Alu -15 297 1 364 98 0 0 chr9 77364487 77364538 -64906906 + MADE1 DNA Mariner 30 80 0 1119 130 22 87 chr9 77365381 77365611 -64905833 - MER20 DNA MER1_type -4 215 1 189 398 29 0 chr9 77365662 77365765 -64905679 - L2 LINE L2 -26 3246 3141 2462 82 0 0 chr9 77365960 77366254 -64905190 + AluSg SINE Alu 1 294 -16 211 315 14 0 chr9 77366324 77366397 -64905047 - MER5A DNA MER1_type -1 188 115 835 156 0 16 chr9 77366471 77366599 -64904845 - FLAM_C SINE Alu -16 127 2 718 241 0 0 chr9 77366612 77366749 -64904695 + MER82 DNA MER2_type 8 144 -509 640 195 0 16 chr9 77367231 77367354 -64904090 + MER82 DNA MER2_type 240 360 -293 744 216 10 91 chr9 77367569 77367616 -64903828 + MER5A DNA MER1_type 7 56 -133 1854 174 0 16 chr9 77367616 77367933 -64903511 + AluJo SINE Alu 1 312 0 744 216 10 91 chr9 77367933 77368030 -64903414 + MER5A DNA MER1_type 56 133 -56 1985 164 0 0 chr9 77368030 77368334 -64903110 - AluSx SINE Alu -8 304 1 744 216 10 91 chr9 77368334 77368387 -64903057 + MER5A DNA MER1_type 133 189 0 285 212 152 46 chr9 77368396 77368547 -64902897 + L1ME4a LINE L1 5834 6000 -121 4171 113 120 94 chr9 77368550 77369888 -64901556 - pTR5 LTR ERV1 0 2438 741 2068 164 44 33 chr9 77370212 77370755 -64900689 - MLT2A2 LTR ERVL 0 554 1 961 93 0 0 chr9 77371204 77371322 -64900122 - AluSq/x SINE Alu -194 118 1 2057 133 3 3 chr9 77372371 77372671 -64898773 + AluSx SINE Alu 1 300 -12 242 264 28 0 chr9 77372744 77372816 -64898628 - MER20B DNA MER1_type -607 176 103 1325 182 76 22 chr9 77373080 77373355 -64898089 - AluJo SINE Alu -22 290 1 3504 120 58 150 chr9 77373454 77374324 -64897120 - pTR5 LTR ERV1 0 2468 1520 730 215 47 54 chr9 77374401 77374680 -64896764 - pTR5 LTR ERV1 -1420 1018 742 846 158 0 23 chr9 77374914 77375047 -64896397 + FLAM_C SINE Alu 2 131 -2 2105 110 6 35 chr9 77375603 77375922 -64895522 + AluSx SINE Alu 1 310 -2 1056 152 0 6 chr9 77375922 77376093 -64895351 + AluSg/x SINE Alu 126 295 -15 940 213 84 42 chr9 77376304 77376567 -64894877 + ORSL DNA AcHobo 1 274 -1 829 126 9 0 chr9 77377294 77377405 -64894039 + AluJb SINE Alu 5 116 -196 531 207 0 0 chr9 77377397 77377484 -64893960 - AluJ/FLAM SINE Alu -224 88 2 * 1060 177 33 0 chr9 77377486 77377667 -64893777 + AluJb SINE Alu 115 301 -11 1757 150 24 17 chr9 77377670 77377957 -64893487 + AluJb SINE Alu 1 289 -23 665 152 19 0 chr9 77377958 77378063 -64893381 + FLAM_C SINE Alu 29 135 -8 2115 139 3 0 chr9 77378391 77378693 -64892751 - AluSx SINE Alu -9 303 1 389 234 32 11 chr9 77379000 77379094 -64892350 + MER81 DNA DNA 19 114 0 1295 251 100 46 chr9 77379145 77379822 -64891622 + HAL1b LINE L1 604 1317 -31 2142 178 20 14 chr9 77379831 77380213 -64891231 + MLT2D LTR ERVL 1 475 -40 450 0 0 0 chr9 77380214 77380264 -64891180 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 1043 176 0 0 chr9 77380279 77380444 -64891000 + MER2 DNA MER2_type 1 165 -180 618 85 53 11 chr9 77380444 77380538 -64890906 + MER4A LTR ERV1 1 98 -566 1623 121 40 27 chr9 77380538 77380860 -64890584 + MER4A LTR ERV1 261 645 -19 928 154 103 23 chr9 77380876 77381051 -64890393 + MER2 DNA MER2_type 157 345 0 357 24 0 0 chr9 77381068 77381110 -64890334 + (CA)n Simple_repeat Simple_repeat 1 42 0 278 27 108 0 chr9 77381135 77381172 -64890272 + MLT2C1 LTR ERVL 350 390 -7 211 329 0 13 chr9 77381323 77381402 -64890042 - MIR SINE MIR -179 83 6 203 156 0 0 chr9 77381672 77381704 -64889740 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 180 0 0 0 chr9 77381727 77381747 -64889697 + (TG)n Simple_repeat Simple_repeat 1 20 0 2312 98 0 0 chr9 77382078 77382373 -64889071 + AluSg SINE Alu 1 295 -15 280 254 12 24 chr9 77382385 77382396 -64889048 + GA-rich Low_complexity Low_complexity 2 12 -155 417 120 93 0 chr9 77382396 77382471 -64888973 + L1MB4 LINE L1 6098 6179 -1 280 254 12 24 chr9 77382471 77382556 -64888888 + GA-rich Low_complexity Low_complexity 12 167 0 411 156 52 73 chr9 77383315 77383346 -64888098 - L1MB3 LINE L1 -7 6176 6146 1604 194 20 7 chr9 77383346 77383640 -64887804 + AluJb SINE Alu 5 302 -10 411 156 52 73 chr9 77383640 77383704 -64887740 - L1MB3 LINE L1 -37 6146 6083 447 244 111 50 chr9 77383772 77383783 -64887661 - L1MC4a LINE L1 0 8042 8033 2053 131 23 0 chr9 77383783 77384088 -64887356 - AluSx SINE Alu 0 312 1 447 244 111 50 chr9 77384088 77384621 -64886823 - L1MC4a LINE L1 -9 8033 7382 388 220 11 33 chr9 77384643 77384734 -64886710 - MER21A LTR ERV1 -134 797 709 592 295 50 43 chr9 77384734 77384992 -64886452 - MER21B LTR ERV1 -598 265 6 305 257 174 0 chr9 77385009 77385118 -64886326 - L1MC4 LINE L1 -594 7448 7321 225 195 69 46 chr9 77385183 77385270 -64886174 + L1MC4 LINE L1 6614 6702 -1340 1689 166 3 13 chr9 77385304 77385606 -64885838 - AluJo SINE Alu -13 299 1 2434 83 3 0 chr9 77385635 77385936 -64885508 + AluSp SINE Alu 1 302 -11 832 202 216 20 chr9 77385986 77386278 -64885166 - L1MC4 LINE L1 -815 7227 6879 805 208 21 0 chr9 77386911 77387055 -64884389 - MER20 DNA MER1_type -70 149 3 2029 126 36 0 chr9 77387147 77387425 -64884019 - AluSx SINE Alu -23 289 2 210 362 118 20 chr9 77387742 77387847 -64883597 + L2 LINE L2 3102 3228 -44 3116 176 13 52 chr9 77387847 77388482 -64882962 + LTR9 LTR ERV1 3 612 0 210 362 118 20 chr9 77388482 77388528 -64882916 + L2 LINE L2 3228 3268 -4 1286 138 127 96 chr9 77388664 77388799 -64882645 + AluSg SINE Alu 1 130 -170 1982 110 0 85 chr9 77388799 77389127 -64882317 + AluSg SINE Alu 1 300 -10 1286 138 127 96 chr9 77389127 77389282 -64882162 + AluSg SINE Alu 130 300 0 754 284 89 23 chr9 77389435 77389738 -64881706 - MLT1L LTR MaLR -10 605 283 1044 234 85 20 chr9 77389759 77390101 -64881343 - L1ME1 LINE L1 -18 6148 5785 2102 96 118 24 chr9 77390113 77390445 -64880999 - THE1B LTR MaLR -1 363 1 3101 139 27 45 chr9 77390447 77390954 -64880490 - MER34C LTR ERV1 -7 578 81 2617 127 41 0 chr9 77390954 77391341 -64880103 + MER57A LTR ERV1 1 403 0 3101 139 27 45 chr9 77391341 77391416 -64880028 - MER34C LTR ERV1 -504 81 6 587 180 64 180 chr9 77391420 77391526 -64879918 - L1ME1 LINE L1 -1995 5790 5673 2096 120 7 0 chr9 77391526 77391817 -64879627 - AluSp SINE Alu -19 294 2 587 180 64 180 chr9 77391817 77391993 -64879451 - L1ME1 LINE L1 -2112 5673 5541 3705 160 81 18 chr9 77391994 77392230 -64879214 - MER50 LTR ERV1 -23 711 491 2252 102 0 10 chr9 77392230 77392535 -64878909 - AluSx SINE Alu -10 302 1 3705 160 81 18 chr9 77392535 77392967 -64878477 - MER50 LTR ERV1 -243 491 1 1206 214 26 12 chr9 77392970 77393352 -64878092 - L1ME1 LINE L1 -628 5538 5154 881 94 0 0 chr9 77393370 77393476 -64877968 - FLAM_C SINE Alu -25 118 13 1996 225 65 26 chr9 77393505 77394123 -64877321 - L1ME1 LINE L1 -985 5161 4520 648 254 88 54 chr9 77394189 77394429 -64877015 - MER112 DNA MER1_type -1 259 12 1377 172 97 8 chr9 77394476 77394743 -64876701 - AluJb SINE Alu -17 295 5 4788 166 52 35 chr9 77395517 77396322 -64875122 - MER54A LTR ERVL -6 895 72 225 0 0 0 chr9 77396322 77396347 -64875097 + (CCCTG)n Simple_repeat Simple_repeat 2 26 0 4788 166 52 35 chr9 77396347 77396421 -64875023 - MER54A LTR ERVL -829 72 1 226 279 51 0 chr9 77396437 77396516 -64874928 - MLT1L LTR MaLR -532 83 1 346 302 75 0 chr9 77398378 77398484 -64872960 + L2 LINE L2 3199 3312 -1 183 323 16 32 chr9 77398508 77398570 -64872874 - MIR3 SINE MIR -133 75 15 6713 107 58 78 chr9 77399536 77399807 -64871637 - Tigger3b DNA MER2_type -1797 1231 956 1584 170 50 14 chr9 77399807 77400089 -64871355 + AluJo SINE Alu 1 292 -20 6713 107 58 78 chr9 77400089 77400804 -64870640 - Tigger3b DNA MER2_type -2072 956 209 418 143 16 0 chr9 77400804 77400867 -64870577 - AluJ/FRAM SINE Alu -18 294 231 6713 107 58 78 chr9 77400867 77401056 -64870388 - Tigger3b DNA MER2_type -2819 209 18 1641 229 36 30 chr9 77401121 77401332 -64870112 + MSTD LTR MaLR 1 216 -180 1877 135 13 36 chr9 77401332 77401636 -64869808 - AluSx SINE Alu -15 297 1 1641 229 36 30 chr9 77401636 77401817 -64869627 + MSTD LTR MaLR 216 395 -1 2253 283 81 45 chr9 77403238 77403364 -64868080 + L2 LINE L2 2005 2125 -1188 814 242 9 72 chr9 77403364 77403587 -64867857 + MER63A DNA MER1_type 1 209 -1 2253 283 81 45 chr9 77403587 77404409 -64867035 + L2 LINE L2 2125 3012 -301 1108 211 108 90 chr9 77404409 77404798 -64866646 + MSTD LTR MaLR 1 396 0 2253 283 81 45 chr9 77404798 77405112 -64866332 + L2 LINE L2 3012 3313 0 1070 212 100 92 chr9 77405116 77405160 -64866284 + MER110A LTR ERV1 1 43 -425 1066 238 33 0 chr9 77405160 77405374 -64866070 - MER58A DNA MER1_type 0 224 4 1070 212 100 92 chr9 77405374 77405777 -64865667 + MER110A LTR ERV1 43 452 -16 685 201 44 19 chr9 77407392 77407551 -64863893 - MIR SINE MIR 0 262 100 1085 141 0 0 chr9 77407950 77408129 -64863315 + AluSg/x SINE Alu 135 313 0 438 314 62 55 chr9 77408540 77408838 -64862606 - L1M4 LINE L1 -832 5314 5010 1631 161 20 30 chr9 77408838 77409142 -64862302 - AluJo SINE Alu -11 301 1 438 314 62 55 chr9 77409142 77409296 -64862148 - L1M4 LINE L1 -1136 5010 4859 560 303 130 51 chr9 77409371 77409400 -64862044 - L1M4 LINE L1 -1269 4877 4852 2353 72 7 0 chr9 77409400 77409690 -64861754 + AluY SINE Alu 1 292 -19 560 303 130 51 chr9 77409690 77409886 -64861558 - L1M4 LINE L1 -1294 4852 4673 2279 194 36 36 chr9 77409886 77410391 -64861053 + MLT1D LTR MaLR 1 505 0 560 303 130 51 chr9 77410391 77410672 -64860772 - L1M4 LINE L1 -1473 4673 4330 1689 129 57 4 chr9 77410677 77410925 -64860519 + AluSg SINE Alu 1 261 -49 189 0 0 0 chr9 77410939 77410960 -64860484 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr9 77410972 77410994 -64860450 + AT_rich Low_complexity Low_complexity 1 22 0 801 165 24 8 chr9 77411375 77411502 -64859942 - FLAM_A SINE Alu -4 129 1 340 316 61 17 chr9 77411637 77411868 -64859576 - L1M4 LINE L1 -2365 3781 3541 366 263 38 70 chr9 77412295 77412508 -64858936 - HAL1b LINE L1 -831 517 312 677 161 16 9 chr9 77412541 77412686 -64858758 - L1M LINE L1 -764 5414 5270 1825 200 0 0 chr9 77412721 77413031 -64858413 - AluSx SINE Alu -2 310 1 916 304 81 52 chr9 77413255 77413796 -64857648 - L2 LINE L2 -598 2716 2138 1999 144 0 16 chr9 77413796 77414101 -64857343 + AluSx SINE Alu 1 300 -12 916 304 81 52 chr9 77414101 77414432 -64857012 - L2 LINE L2 -1176 2138 1818 24 67 0 0 chr9 77414460 77414505 -64856939 + AT_rich Low_complexity Low_complexity 1 45 0 604 243 133 59 chr9 77414676 77414814 -64856630 - L2 LINE L2 -1516 1798 1672 2270 105 0 3 chr9 77414814 77415108 -64856336 + AluSq SINE Alu 1 293 -20 604 243 133 59 chr9 77415108 77415307 -64856137 - L2 LINE L2 -1642 1672 1436 1879 160 0 0 chr9 77415747 77416035 -64855409 - AluSx SINE Alu -20 292 5 934 100 13 183 chr9 77416375 77416604 -64854840 - MER47B DNA MER2_type -59 359 170 * 1409 183 15 15 chr9 77416602 77416870 -64854574 - MLT1A1 LTR MaLR -97 268 1 603 288 66 25 chr9 77416907 77417150 -64854294 - MIR SINE MIR -3 259 7 29 60 0 0 chr9 77417491 77417541 -64853903 + GC_rich Low_complexity Low_complexity 1 50 0 267 152 0 0 chr9 77417738 77417784 -64853660 + A-rich Low_complexity Low_complexity 1 46 0 229 85 0 43 chr9 77417782 77417829 -64853615 + (TAA)n Simple_repeat Simple_repeat 2 46 0 * 1711 221 142 56 chr9 77418214 77418645 -64852799 - L1MC4 LINE L1 -150 7892 7499 1702 80 0 5 chr9 77418645 77418857 -64852587 - AluY SINE Alu -18 293 83 1711 221 142 56 chr9 77418857 77419601 -64851843 - L1MC4 LINE L1 -543 7499 6459 2303 109 0 3 chr9 77420732 77421036 -64850408 + AluSx SINE Alu 1 303 -9 2397 79 0 0 chr9 77421038 77421350 -64850094 + AluY SINE Alu 1 311 0 230 343 0 0 chr9 77422613 77422680 -64848764 + HAL1 LINE L1 7 73 -2434 2598 58 0 3 chr9 77422690 77422998 -64848446 - AluY SINE Alu -4 307 1 277 114 214 0 chr9 77422998 77423068 -64848376 + Charlie5 DNA MER1_type 2498 2582 -30 2135 214 42 12 chr9 77423138 77423642 -64847802 + LTR40a LTR ERVL 1 519 0 1071 124 124 24 chr9 77423804 77424013 -64847431 + MER30 DNA MER1_type 1 230 0 1711 115 127 0 chr9 77424119 77424379 -64847065 - AluSx SINE Alu -8 294 2 30 45 0 0 chr9 77424402 77424446 -64846998 + AT_rich Low_complexity Low_complexity 1 44 0 7491 36 9 5 chr9 77424860 77426479 -64844965 + L1PA5 LINE L1 4533 6154 0 1731 170 23 23 chr9 77426613 77426760 -64844684 + L1MB4 LINE L1 5765 5911 -269 4758 105 20 34 chr9 77426760 77427458 -64843986 - LTR12 LTR ERV1 0 688 1 1731 170 23 23 chr9 77427458 77427663 -64843781 + L1MB4 LINE L1 5910 6117 -63 1246 78 0 0 chr9 77427799 77427953 -64843491 - AluSg/x SINE Alu -18 294 141 4587 210 38 14 chr9 77428718 77429643 -64841801 - MLT1C-int LTR MaLR -278 1093 147 805 181 0 0 chr9 77429650 77429783 -64841661 - AluJb SINE Alu -179 133 1 809 121 51 32 chr9 77429784 77429869 -64841575 - MLT1C-int LTR MaLR -1211 160 69 2219 193 81 95 chr9 77429869 77430210 -64841234 - LTR8A LTR ERV1 0 727 383 2307 113 0 13 chr9 77430210 77430520 -64840924 + AluY SINE Alu 1 306 -5 2219 193 81 95 chr9 77430520 77430915 -64840529 - LTR8A LTR ERV1 -344 383 1 809 121 51 32 chr9 77430915 77430986 -64840458 - MLT1C-int LTR MaLR -1302 69 1 1369 215 88 34 chr9 77430986 77431428 -64840016 - MLT1C LTR MaLR 0 467 2 448 250 35 0 chr9 77431433 77431549 -64839895 - L1ME3 LINE L1 -75 6087 5968 200 231 183 19 chr9 77431924 77432028 -64839416 - L2 LINE L2 -9 3304 3184 515 177 186 18 chr9 77432618 77432731 -64838713 - FLAM_A SINE Alu 0 133 2 2205 107 19 7 chr9 77433860 77434168 -64837276 - AluSx SINE Alu 0 312 1 595 256 136 16 chr9 77434168 77434359 -64837085 - MER58A DNA MER1_type -10 214 1 243 0 0 0 chr9 77434368 77434395 -64837049 + (A)n Simple_repeat Simple_repeat 1 27 0 457 363 26 4 chr9 77434399 77434625 -64836819 + MIR SINE MIR 25 255 -7 278 278 52 10 chr9 77434855 77434952 -64836492 - LTR67 LTR ERVL 0 557 457 1217 161 5 23 chr9 77435364 77435581 -64835863 - MER20 DNA MER1_type -1 218 6 185 363 20 0 chr9 77436234 77436336 -64835108 - MIR3 SINE MIR -14 194 91 233 256 39 13 chr9 77436374 77436452 -64834992 + GA-rich Low_complexity Low_complexity 1 80 0 492 248 56 6 chr9 77436760 77436921 -64834523 - MIR SINE MIR -8 254 86 247 125 0 36 chr9 77437927 77437983 -64833461 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 1497 135 34 29 chr9 77438167 77438618 -64832826 - LTR54 LTR ERV1 0 510 1 333 121 35 0 chr9 77438683 77438741 -64832703 - Alu SINE Alu 0 302 243 953 82 37 0 chr9 77438741 77438876 -64832568 - MER41B LTR ERV1 0 635 496 1957 104 4 0 chr9 77438876 77439126 -64832318 + AluSg SINE Alu 1 251 -59 206 151 0 57 chr9 77439331 77439384 -64832060 + T-rich Low_complexity Low_complexity 2 51 0 1261 234 87 44 chr9 77439706 77439855 -64831589 + HAL1 LINE L1 214 355 -2152 1956 59 118 18 chr9 77439855 77440127 -64831317 + AluY SINE Alu 1 299 -12 1261 234 87 44 chr9 77440127 77440222 -64831222 + HAL1 LINE L1 355 445 -2062 1130 214 12 64 chr9 77440222 77440384 -64831060 + MER33 DNA MER1_type 1 137 -2448 1774 179 0 7 chr9 77440384 77440674 -64830770 + AluJb SINE Alu 1 288 -24 1130 214 12 64 chr9 77440674 77440853 -64830591 + MER33 DNA MER1_type 137 324 0 1261 234 87 44 chr9 77440853 77441081 -64830363 + HAL1 LINE L1 445 707 -1800 612 275 135 18 chr9 77441258 77441487 -64829957 + LTR16C LTR ERVL 236 491 0 342 298 21 0 chr9 77441488 77441582 -64829862 + HAL1 LINE L1 701 796 -1711 2254 92 0 0 chr9 77441589 77441918 -64829526 - AluY SINE Alu 0 329 1 270 73 0 0 chr9 77441918 77441959 -64829485 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1867 138 52 0 chr9 77441959 77442228 -64829216 - AluSx SINE Alu -29 283 1 300 57 0 0 chr9 77442259 77442294 -64829150 - U2 snRNA snRNA -153 35 1 347 153 56 0 chr9 77442324 77442396 -64829048 - L1MA10 LINE L1 -10 6324 6249 2180 169 12 22 chr9 77442401 77442808 -64828636 - MER57A LTR ERV1 0 403 1 3431 187 8 2 chr9 77442813 77443429 -64828015 - L1MB1 LINE L1 -90 6099 5480 232 238 48 14 chr9 77443429 77443576 -64827868 + (TA)n Simple_repeat Simple_repeat 2 153 0 1163 136 5 0 chr9 77443576 77443760 -64827684 - L1MB1 LINE L1 -694 5474 5290 229 151 113 0 chr9 77443793 77443846 -64827598 + HAL1 LINE L1 820 878 -1629 2294 85 0 7 chr9 77444353 77444646 -64826798 + AluSq SINE Alu 2 292 -21 711 62 0 0 chr9 77444838 77444935 -64826509 - AluY SINE Alu 0 311 215 2099 132 0 29 chr9 77445089 77445399 -64826045 + AluSx SINE Alu 1 301 -11 1062 188 48 4 chr9 77445405 77445634 -64825810 + L1MCb LINE L1 740 978 -5067 198 103 0 0 chr9 77445930 77445959 -64825485 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 2189 70 48 0 chr9 77446171 77446476 -64824968 + AluSp SINE Alu 1 318 0 388 232 112 67 chr9 77446698 77446870 -64824574 + MIR3 SINE MIR 2 187 -21 1918 132 38 7 chr9 77447453 77447776 -64823668 - AluSx SINE Alu 0 312 1 1447 117 4 29 chr9 77448518 77448817 -64822627 + L1M2 LINE L1 5203 5495 -743 2068 122 0 3 chr9 77448858 77449173 -64822271 + AluSg SINE Alu 1 310 0 239 191 0 0 chr9 77449187 77449229 -64822215 + MER5A DNA MER1_type 12 53 -136 3951 194 85 32 chr9 77449230 77449396 -64822048 - MER45B DNA AcHobo -541 1040 884 1983 154 0 0 chr9 77449396 77449694 -64821750 - AluSq SINE Alu -15 298 1 3951 194 85 32 chr9 77449694 77450459 -64820985 - MER45B DNA AcHobo -697 884 60 186 233 0 23 chr9 77450484 77450527 -64820917 + MER5A DNA MER1_type 41 82 -107 1022 150 17 6 chr9 77450657 77450830 -64820614 + AluJb SINE Alu 131 305 -7 929 170 28 44 chr9 77450852 77451034 -64820410 + MSTD LTR MaLR 218 396 0 21 0 0 0 chr9 77451555 77451576 -64819868 + AT_rich Low_complexity Low_complexity 1 21 0 1891 188 97 46 chr9 77451586 77452119 -64819325 + MLT1F1 LTR MaLR 10 567 0 1719 162 48 0 chr9 77452602 77452873 -64818571 + AluJb SINE Alu 1 284 -28 21 0 0 0 chr9 77452873 77452894 -64818550 + AT_rich Low_complexity Low_complexity 1 21 0 894 121 0 0 chr9 77453694 77453818 -64817626 - FLAM_C SINE Alu -7 126 3 2292 223 95 22 chr9 77453874 77454503 -64816941 + L1MCa LINE L1 19 693 -5733 750 241 9 75 chr9 77454604 77454832 -64816612 - AluJo SINE Alu -98 214 2 663 229 21 0 chr9 77454844 77454988 -64816456 - MLT1A1 LTR MaLR -218 147 1 181 330 85 0 chr9 77455078 77455172 -64816272 - MIR SINE MIR -57 205 104 503 296 136 58 chr9 77455395 77455689 -64815755 - MLT1K LTR MaLR -187 401 85 524 224 127 22 chr9 77455731 77455959 -64815485 + LTR37B LTR ERV1 194 445 -23 1020 176 6 6 chr9 77455959 77456135 -64815309 - AluJb SINE Alu -18 294 119 790 189 212 52 chr9 77456224 77456436 -64815008 + MLT1G1 LTR MaLR 297 595 0 2020 139 0 14 chr9 77456519 77456813 -64814631 - AluJb SINE Alu -22 290 1 727 304 53 15 chr9 77457456 77457722 -64813722 + MLT1K LTR MaLR 22 297 -291 1571 243 96 59 chr9 77458013 77458127 -64813317 + MLT1E LTR MaLR 1 109 -484 2002 157 0 10 chr9 77458127 77458439 -64813005 - AluJb SINE Alu 0 312 4 1571 243 96 59 chr9 77458439 77458861 -64812583 + MLT1E LTR MaLR 109 556 -37 2512 181 30 31 chr9 77458868 77459473 -64811971 - MER82 DNA MER2_type 0 653 1 33 43 0 0 chr9 77460721 77460768 -64810676 + AT_rich Low_complexity Low_complexity 1 47 0 1175 166 123 16 chr9 77462973 77463226 -64808218 - MER58B DNA MER1_type 0 341 62 304 322 155 0 chr9 77465243 77465417 -64806027 + MIR SINE MIR 62 262 0 2269 99 3 3 chr9 77465469 77465771 -64805673 - AluSc SINE Alu -7 302 1 354 23 0 0 chr9 77466661 77466704 -64804740 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 27 29 0 0 chr9 77467813 77467847 -64803597 + AT_rich Low_complexity Low_complexity 1 34 0 275 143 24 0 chr9 77467847 77467889 -64803555 - MER66B LTR ERV1 -146 340 298 607 251 101 32 chr9 77468339 77468558 -64802886 + MIR SINE MIR 18 251 -11 2168 120 0 3 chr9 77469844 77470144 -64801300 - AluJb SINE Alu -13 299 1 1022 173 5 69 chr9 77471317 77471388 -64800056 + MER5A DNA MER1_type 1 75 -114 1805 143 10 30 chr9 77471388 77471689 -64799755 - AluJo SINE Alu -17 295 1 1022 173 5 69 chr9 77471689 77471819 -64799625 + MER5A DNA MER1_type 75 189 0 274 200 0 0 chr9 77471853 77471903 -64799541 - L2 LINE L2 0 3272 3223 2316 69 0 0 chr9 77473002 77473278 -64798166 - AluSc SINE Alu -15 294 19 1353 188 24 26 chr9 77473293 77473633 -64797811 + LTR37B LTR ERV1 90 468 0 181 256 53 90 chr9 77474083 77474216 -64797228 + L2 LINE L2 2392 2519 -795 1871 179 39 12 chr9 77474875 77475211 -64796233 + MER7A DNA MER2_type 1 343 -3 3385 202 25 26 chr9 77475291 77475945 -64795499 - MER82 DNA MER2_type 0 653 1 184 262 19 112 chr9 77476275 77476382 -64795062 + L2 LINE L2 240 336 -2978 279 346 31 12 chr9 77476415 77476577 -64794867 - MIR SINE MIR 0 262 98 1779 168 0 35 chr9 77476799 77477115 -64794329 - AluJb SINE Alu -7 305 1 285 335 160 39 chr9 77477422 77477628 -64793816 + MIR SINE MIR 20 250 -12 28 0 0 0 chr9 77477661 77477689 -64793755 + AT_rich Low_complexity Low_complexity 1 28 0 1821 165 17 0 chr9 77478555 77478846 -64792598 - AluJb SINE Alu -16 296 1 185 238 0 0 chr9 77479116 77479158 -64792286 - MIR SINE MIR -8 254 213 2128 140 87 0 chr9 77479200 77479557 -64791887 - L1MA8 LINE L1 -3 6288 5901 845 294 28 0 chr9 77479557 77479775 -64791669 - MIR SINE MIR -35 227 4 214 100 0 100 chr9 77479929 77479979 -64791465 + (T)n Simple_repeat Simple_repeat 1 45 0 2439 73 0 7 chr9 77480228 77480529 -64790915 - AluY SINE Alu -12 299 1 281 327 48 84 chr9 77480984 77481235 -64790209 + L2 LINE L2 2880 3121 -151 3682 106 56 0 chr9 77481390 77481930 -64789514 - L1PA15 LINE L1 -21 6144 5575 1338 223 0 11 chr9 77482271 77482544 -64788900 - AluJo SINE Alu -22 290 21 933 239 25 86 chr9 77482554 77482643 -64788801 + MER58B DNA MER1_type 47 140 -2280 2179 122 0 0 chr9 77482643 77482938 -64788506 + AluSx SINE Alu 1 295 -17 933 239 25 86 chr9 77482938 77483002 -64788442 + MER58B DNA MER1_type 140 206 -2214 1744 162 10 10 chr9 77483002 77483299 -64788145 + AluSx SINE Alu 1 297 -15 933 239 25 86 chr9 77483299 77483458 -64787986 + MER58B DNA MER1_type 206 341 0 344 226 29 117 chr9 77483458 77483537 -64787907 + MIR SINE MIR 89 153 -109 1832 157 20 7 chr9 77483537 77483837 -64787607 + AluJo SINE Alu 1 304 -8 344 226 29 117 chr9 77483837 77483894 -64787550 + MIR SINE MIR 153 213 -49 790 257 56 58 chr9 77484076 77484469 -64786975 + MER57B LTR ERV1 43 434 0 2112 107 10 7 chr9 77484677 77484975 -64786469 - AluSx SINE Alu -13 299 1 1830 114 3 65 chr9 77486364 77486654 -64784790 + AluSx SINE Alu 6 277 -35 333 0 0 0 chr9 77486677 77486714 -64784730 + (TG)n Simple_repeat Simple_repeat 2 38 0 267 265 48 0 chr9 77486984 77487067 -64784377 + MIR SINE MIR 90 176 -86 2113 135 3 0 chr9 77488913 77489216 -64782228 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr9 77491145 77491176 -64780268 + AT_rich Low_complexity Low_complexity 1 31 0 240 111 0 0 chr9 77491706 77491742 -64779702 + (A)n Simple_repeat Simple_repeat 1 36 0 428 232 20 0 chr9 77491948 77492047 -64779397 - MIR SINE MIR -112 150 50 21 36 0 0 chr9 77493022 77493050 -64778394 + AT_rich Low_complexity Low_complexity 1 28 0 1814 137 50 4 chr9 77496615 77496892 -64774552 + AluJb SINE Alu 5 294 -18 4958 162 65 8 chr9 77496935 77497387 -64774057 + L1MC1 LINE L1 4835 5260 -1073 1994 126 7 10 chr9 77497387 77497707 -64773737 + AluSc SINE Alu 1 309 0 4958 162 65 8 chr9 77497707 77498479 -64772965 + L1MC1 LINE L1 5260 6112 -221 1121 172 25 10 chr9 77498646 77498850 -64772594 + L1MC1 LINE L1 6121 6327 -6 1204 195 0 5 chr9 77499083 77499293 -64772151 + AluJb SINE Alu 77 285 -27 464 0 18 0 chr9 77499295 77499351 -64772093 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 253 202 29 52 chr9 77499881 77500054 -64771390 + (TAAA)n Simple_repeat Simple_repeat 2 170 0 405 108 0 0 chr9 77500866 77500931 -64770513 + L1PB1 LINE L1 6086 6150 -1 754 247 49 62 chr9 77501502 77501810 -64769634 - L2 LINE L2 -62 3251 2948 191 196 43 22 chr9 77501935 77501981 -64769463 + L2 LINE L2 3247 3293 -20 1387 155 13 0 chr9 77502430 77502656 -64768788 + MER46A DNA MER2_type 7 235 -1 1872 154 68 9 chr9 77502970 77503294 -64768150 + MER2 DNA MER2_type 1 343 -1 383 263 0 0 chr9 77503671 77503751 -64767693 + MER21B LTR ERV1 1 80 -783 * 577 144 144 88 chr9 77503741 77503901 -64767543 + MER21B LTR ERV1 683 851 -12 641 175 38 24 chr9 77504171 77504340 -64767104 + MER3 DNA MER1_type 1 205 -4 230 289 22 0 chr9 77504346 77504436 -64767008 + MER103 DNA DNA 74 165 -1 23 0 0 0 chr9 77505514 77505537 -64765907 + AT_rich Low_complexity Low_complexity 1 23 0 263 180 144 45 chr9 77505629 77505740 -64765704 + MIR SINE MIR 112 233 -29 330 103 309 0 chr9 77506312 77506380 -64765064 - L2 LINE L2 -1 3312 3224 208 184 158 0 chr9 77506923 77506961 -64764483 + MIR SINE MIR 36 79 -183 2187 99 3 0 chr9 77507780 77508063 -64763381 + AluSp SINE Alu 1 284 -29 1177 252 87 11 chr9 77508566 77508935 -64762509 + MLT1I LTR MaLR 13 409 0 332 223 116 8 chr9 77509146 77509267 -64762177 + MER113 DNA MER1_type? 23 156 -365 1369 164 44 4 chr9 77509272 77509497 -64761947 - MER46A DNA MER2_type 0 236 3 203 96 58 19 chr9 77509553 77509605 -64761839 + A-rich Low_complexity Low_complexity 5 58 0 2372 101 0 0 chr9 77510205 77510513 -64760931 + AluSg SINE Alu 1 308 -2 21 0 0 0 chr9 77510737 77510758 -64760686 + AT_rich Low_complexity Low_complexity 1 21 0 270 220 85 0 chr9 77510759 77510818 -64760626 + MLT1J2 LTR MaLR 375 438 -12 2047 114 0 0 chr9 77510984 77511248 -64760196 - AluSq SINE Alu -49 264 1 358 343 57 14 chr9 77511258 77511555 -64759889 + L1M4 LINE L1 2336 2645 -3501 306 258 53 38 chr9 77511768 77511900 -64759544 + L1M4 LINE L1 2957 3090 -3056 207 200 0 0 chr9 77512621 77512661 -64758783 + A-rich Low_complexity Low_complexity 2 41 0 2681 193 93 19 chr9 77513732 77514222 -64757222 + MLT1F1 LTR MaLR 1 534 -33 1927 148 27 0 chr9 77514222 77514519 -64756925 - AluJb SINE Alu -7 305 1 2681 193 93 19 chr9 77514519 77514556 -64756888 + MLT1F1 LTR MaLR 534 567 0 190 304 18 0 chr9 77515300 77515356 -64756088 + L2 LINE L2 3248 3304 -9 683 94 0 0 chr9 77515459 77515544 -64755900 + AluSp SINE Alu 2 86 -226 8757 56 2 2 chr9 77515544 77516551 -64754893 + LTR13 LTR ERVK 1 1007 0 1580 116 5 0 chr9 77516551 77516767 -64754677 + AluSp SINE Alu 81 297 -16 995 229 4 43 chr9 77517461 77517692 -64753752 - MER58A DNA MER1_type -2 222 1 279 252 175 14 chr9 77517805 77517948 -64753496 + L1ME LINE L1 5541 5706 -415 1844 153 129 6 chr9 77518516 77518857 -64752587 - MLT1B LTR MaLR -7 383 1 2312 121 0 0 chr9 77519013 77519326 -64752118 - AluSq SINE Alu 0 313 1 43743 33 21 3 chr9 77519745 77525782 -64745662 + L1PA2 LINE L1 2 6152 -3 24 0 0 0 chr9 77525807 77525831 -64745613 + AT_rich Low_complexity Low_complexity 1 24 0 7911 17 5 0 chr9 77526030 77527664 -64743780 + L1PA2 LINE L1 4516 6153 -2 24 0 0 0 chr9 77527698 77527722 -64743722 + AT_rich Low_complexity Low_complexity 1 24 0 362 182 234 0 chr9 77527766 77527843 -64743601 - MER30 DNA MER1_type 0 230 136 24 67 0 0 chr9 77528864 77528909 -64742535 + AT_rich Low_complexity Low_complexity 1 45 0 1992 91 76 0 chr9 77529688 77530037 -64741407 + AluSq SINE Alu 1 370 0 2120 88 3 3 chr9 77530134 77530451 -64740993 + AluY SINE Alu 1 317 0 696 270 20 5 chr9 77530602 77530798 -64740646 + MIR SINE MIR 29 227 -35 822 239 16 0 chr9 77530905 77531093 -64740351 + L1MB2 LINE L1 4603 4793 -1353 721 185 80 43 chr9 77531093 77531255 -64740189 + FRAM SINE Alu 1 166 -10 5214 160 22 31 chr9 77531256 77531927 -64739517 + L1MB2 LINE L1 4789 5465 -706 203 79 26 0 chr9 77531927 77531965 -64739479 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5214 160 22 31 chr9 77531965 77532255 -64739189 + L1MB2 LINE L1 5465 5756 -415 1810 146 187 11 chr9 77532255 77532618 -64738826 - MSTA LTR MaLR -1 427 1 5214 160 22 31 chr9 77532618 77533045 -64738399 + L1MB2 LINE L1 5756 6171 0 27 62 0 0 chr9 77533856 77533904 -64737540 + AT_rich Low_complexity Low_complexity 1 48 0 2202 111 0 23 chr9 77533950 77534256 -64737188 - AluSp SINE Alu -14 299 1 1081 214 38 14 chr9 77534270 77534559 -64736885 - L1MA4 LINE L1 0 6300 6005 761 290 39 45 chr9 77534599 77534909 -64736535 + MLT1K LTR MaLR 25 332 -256 342 218 22 22 chr9 77535378 77535557 -64735887 + (TA)n Simple_repeat Simple_repeat 2 180 0 1748 158 18 24 chr9 77535569 77535897 -64735547 - L1MA7 LINE L1 -29 6262 5937 2389 88 0 0 chr9 77536344 77536639 -64734805 - AluSx SINE Alu -17 295 1 280 274 12 12 chr9 77536642 77536726 -64734718 + MIR SINE MIR 66 149 -113 2154 159 31 18 chr9 77537002 77537385 -64734059 + MLT1B LTR MaLR 1 388 -2 1518 196 16 16 chr9 77538031 77538343 -64733101 - AluJb SINE Alu 0 312 1 263 125 0 0 chr9 77538360 77538400 -64733044 - FLAM SINE Alu -8 125 86 1164 193 0 35 chr9 77538400 77538628 -64732816 - AluJo SINE Alu -92 220 1 1895 145 14 24 chr9 77540945 77541241 -64730203 - AluJb SINE Alu -14 298 6 334 321 54 24 chr9 77541265 77541433 -64730011 + MIR3 SINE MIR 11 183 -25 244 220 0 20 chr9 77541619 77541669 -64729775 + Alu SINE Alu 66 114 -188 236 308 86 8 chr9 77544274 77544391 -64727053 + MIR SINE MIR 28 153 -109 953 106 13 53 chr9 77544417 77544568 -64726876 + AluSc SINE Alu 133 277 -32 2343 103 0 0 chr9 77545027 77545329 -64726115 - AluSg SINE Alu -8 302 1 2175 125 0 31 chr9 77545749 77546070 -64725374 - AluSx SINE Alu -1 311 1 24 0 0 0 chr9 77546344 77546368 -64725076 + AT_rich Low_complexity Low_complexity 1 24 0 31 68 0 0 chr9 77546470 77546529 -64724915 + AT_rich Low_complexity Low_complexity 1 59 0 1965 137 7 7 chr9 77546640 77546925 -64724519 - AluSx SINE Alu -27 285 1 433 288 20 39 chr9 77547310 77547463 -64723981 - L2 LINE L2 -4 3268 3119 891 190 39 0 chr9 77547540 77547719 -64723725 - MER20 DNA MER1_type 0 219 34 265 292 0 0 chr9 77547927 77547999 -64723445 + LTR33 LTR ERVL 1 72 -449 198 0 0 0 chr9 77548030 77548052 -64723392 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2018 100 0 0 chr9 77548054 77548313 -64723131 - AluSq SINE Alu -54 259 1 541 297 68 19 chr9 77548382 77548648 -64722796 + LTR33 LTR ERVL 235 513 -8 2262 102 7 0 chr9 77549639 77549933 -64721511 - AluSx SINE Alu -15 297 2 2502 141 27 7 chr9 77550884 77551289 -64720155 + MLT2C2 LTR ERVL 1 413 -51 660 199 208 49 chr9 77552135 77552361 -64719083 + ORSL DNA AcHobo 14 275 0 887 172 75 0 chr9 77552646 77552820 -64718624 - MER5A DNA MER1_type 0 189 3 305 331 106 0 chr9 77553439 77553581 -64717863 - MIR3 SINE MIR -15 193 37 2212 112 7 0 chr9 77553651 77553945 -64717499 - AluSx SINE Alu -16 296 1 189 0 0 0 chr9 77554197 77554218 -64717226 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 182 348 87 0 chr9 77554408 77554500 -64716944 + MIR SINE MIR 21 120 -142 256 162 176 0 chr9 77554546 77554614 -64716830 + MIR SINE MIR 176 255 -7 36 0 0 0 chr9 77555781 77555817 -64715627 + AT_rich Low_complexity Low_complexity 1 36 0 2142 105 0 0 chr9 77555827 77556112 -64715332 - AluSx SINE Alu -27 285 1 24 0 0 0 chr9 77563024 77563048 -64708396 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 77563664 77563686 -64707758 + AT_rich Low_complexity Low_complexity 1 22 0 936 269 4 4 chr9 77563731 77563965 -64707479 - MIR SINE MIR -2 260 27 1704 169 7 7 chr9 77565987 77566282 -64705162 - AluJb SINE Alu -17 295 1 295 266 0 0 chr9 77566371 77566435 -64705009 + L2 LINE L2 3208 3271 -1 338 260 185 14 chr9 77567853 77567999 -64703445 + MER5A DNA MER1_type 18 188 -1 31 0 0 0 chr9 77568252 77568283 -64703161 + AT_rich Low_complexity Low_complexity 1 31 0 2423 88 0 3 chr9 77568283 77568601 -64702843 - L1PA8A LINE L1 -13 6118 5802 1406 309 121 33 chr9 77569935 77570802 -64700642 + L2 LINE L2 1815 2757 -557 898 163 8 0 chr9 77571091 77571220 -64700224 + FLAM_C SINE Alu 1 130 -3 1856 174 3 0 chr9 77571241 77571534 -64699910 - AluJb SINE Alu -18 294 1 1053 238 4 0 chr9 77571534 77571778 -64699666 + L1ME4a LINE L1 5639 5883 -238 558 237 169 16 chr9 77571957 77572167 -64699277 + MIR SINE MIR 17 252 -10 21 0 0 0 chr9 77572186 77572207 -64699237 + AT_rich Low_complexity Low_complexity 1 21 0 1796 68 51 4 chr9 77572456 77572692 -64698752 + AluY SINE Alu 38 284 -27 183 42 0 0 chr9 77573097 77573121 -64698323 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2117 117 0 36 chr9 77573649 77573957 -64697487 - AluSx SINE Alu -15 297 1 588 321 46 21 chr9 77574221 77574458 -64696986 - MIR SINE MIR -17 245 3 2326 62 42 0 chr9 77575394 77575682 -64695762 - AluY SINE Alu -11 300 1 534 199 114 54 chr9 77576041 77576207 -64695237 + L1 LINE L1 4095 4270 -1876 269 287 66 16 chr9 77576207 77576329 -64695115 + MER65A LTR ERV1 1 128 -317 258 226 94 75 chr9 77578043 77578149 -64693295 - HUERS-P3b LTR ERV1 -7310 108 1 3292 169 57 11 chr9 77578149 77578759 -64692685 - LTR9B LTR ERV1 0 644 7 1841 93 24 38 chr9 77578762 77579053 -64692391 - THE1B LTR MaLR -70 294 8 1951 144 39 0 chr9 77579066 77579378 -64692066 - L1P LINE L1 -1924 4222 3899 1359 199 186 13 chr9 77579478 77579866 -64691578 - MLT1C LTR MaLR -7 460 6 275 309 17 34 chr9 77579942 77580120 -64691324 - L1MEc LINE L1 -5066 2056 1882 665 296 82 17 chr9 77580195 77580550 -64690894 - L1MEc LINE L1 -4890 1533 1156 234 250 29 0 chr9 77580576 77580644 -64690800 + (TA)n Simple_repeat Simple_repeat 1 70 0 1443 160 71 19 chr9 77580644 77580913 -64690531 - AluJo SINE Alu -29 283 1 2422 186 68 19 chr9 77581179 77582188 -64689256 - L1PBa LINE L1 -3261 3601 2500 21 0 0 0 chr9 77584000 77584021 -64687423 + AT_rich Low_complexity Low_complexity 1 21 0 2188 81 42 3 chr9 77584022 77584306 -64687138 + AluSx SINE Alu 2 296 -16 1507 79 0 10 chr9 77584415 77584618 -64686826 + AluY SINE Alu 111 311 0 3499 183 63 11 chr9 77584629 77585691 -64685753 + L1P4 LINE L1 4492 5593 -572 837 138 10 117 chr9 77585801 77585850 -64685594 + MER34 LTR ERV1 27 80 -462 870 150 8 15 chr9 77585850 77585983 -64685461 + FLAM_C SINE Alu 1 132 -1 837 138 10 117 chr9 77585983 77586129 -64685315 + MER34 LTR ERV1 80 201 -341 818 227 69 30 chr9 77586167 77586370 -64685074 + MER34 LTR ERV1 300 510 -32 723 161 0 0 chr9 77586463 77586575 -64684869 + FLAM_A SINE Alu 28 139 -3 426 280 25 8 chr9 77586839 77586957 -64684487 + MER65B-int LTR ERV1 3622 3741 -1130 1667 274 39 16 chr9 77586968 77587453 -64683991 + MER65B-int LTR ERV1 4376 4871 0 366 250 58 0 chr9 77587471 77587575 -64683869 + MER65B LTR ERV1 19 128 -403 1574 148 3 64 chr9 77587932 77588230 -64683214 + AluJb SINE Alu 1 280 -32 262 303 0 0 chr9 77589624 77589690 -64681754 - MLT1K LTR MaLR -7 581 516 236 259 43 43 chr9 77589634 77589750 -64681694 - LTR67 LTR ERVL -15 542 427 * 232 245 0 0 chr9 77590136 77590189 -64681255 + (CA)n Simple_repeat Simple_repeat 2 54 0 1151 142 117 5 chr9 77590789 77590986 -64680458 - MER20 DNA MER1_type 0 219 1 189 171 0 0 chr9 77591381 77591416 -64680028 + T-rich Low_complexity Low_complexity 1 35 0 2056 130 3 13 chr9 77591466 77591773 -64679671 - AluSx SINE Alu -8 304 1 545 237 35 69 chr9 77592066 77592239 -64679205 - MER5B DNA MER1_type -6 172 6 505 316 117 13 chr9 77592441 77592672 -64678772 + MIR SINE MIR 1 255 -7 924 166 86 17 chr9 77592975 77593150 -64678294 - MER5A DNA MER1_type 0 189 3 247 231 19 0 chr9 77593156 77593208 -64678236 + MIR SINE MIR 89 141 -67 23 0 0 0 chr9 77593411 77593434 -64678010 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr9 77593502 77593537 -64677907 + AT_rich Low_complexity Low_complexity 1 35 0 435 172 115 49 chr9 77594176 77594298 -64677146 - MER5A DNA MER1_type -51 138 9 2255 92 3 10 chr9 77594375 77594668 -64676776 + AluSg SINE Alu 1 291 -19 195 42 0 0 chr9 77594991 77595015 -64676429 + (CA)n Simple_repeat Simple_repeat 2 25 0 309 82 0 0 chr9 77595032 77595081 -64676363 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1870 136 24 20 chr9 77595081 77595376 -64676068 - AluJb SINE Alu -15 297 2 2390 65 23 7 chr9 77595788 77596094 -64675350 + AluY SINE Alu 1 311 0 381 43 0 0 chr9 77597134 77597181 -64674263 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1625 165 36 21 chr9 77597181 77597460 -64673984 - AluJb SINE Alu -29 283 1 316 218 51 0 chr9 77597937 77598015 -64673429 + MIR3 SINE MIR 127 208 0 634 266 65 0 chr9 77598169 77598353 -64673091 + MIR SINE MIR 36 231 -31 618 287 93 45 chr9 77598449 77598759 -64672685 + MLT1K LTR MaLR 102 426 -162 457 294 67 29 chr9 77598761 77598999 -64672445 + MLT1K LTR MaLR 324 570 -18 216 97 0 0 chr9 77599163 77599194 -64672250 + (T)n Simple_repeat Simple_repeat 1 31 0 364 324 0 19 chr9 77599565 77599673 -64671771 - MIR SINE MIR -63 145 40 264 30 0 0 chr9 77599884 77599917 -64671527 + (TG)n Simple_repeat Simple_repeat 2 34 0 2046 194 3 6 chr9 77600175 77600535 -64670909 - MLT1A1 LTR MaLR 0 365 7 227 253 74 53 chr9 77602724 77602819 -64668625 - MIR SINE MIR -58 204 108 486 251 29 40 chr9 77603242 77603417 -64668027 - MER46C DNA MER2_type -7 331 159 1874 114 77 4 chr9 77603561 77603834 -64667610 + AluSg SINE Alu 3 295 -15 2488 74 0 0 chr9 77603923 77604222 -64667222 + AluY SINE Alu 1 299 -12 41 36 0 0 chr9 77604439 77604494 -64666950 + AT_rich Low_complexity Low_complexity 1 55 0 804 100 0 0 chr9 77605176 77605286 -64666158 + MER83 LTR ERV1 1 110 -338 * 1854 140 77 59 chr9 77605285 77605677 -64665767 + MER83 LTR ERV1 50 448 0 525 282 76 53 chr9 77606045 77606087 -64665357 + L1MB7 LINE L1 5255 5295 -867 1684 194 3 13 chr9 77606087 77606401 -64665043 + AluJb SINE Alu 1 311 -1 525 282 76 53 chr9 77606401 77606650 -64664794 + L1MB7 LINE L1 5295 5549 -613 2809 86 19 19 chr9 77606650 77607023 -64664421 + THE1C LTR MaLR 3 375 0 525 282 76 53 chr9 77607023 77607233 -64664211 + L1MB7 LINE L1 5549 5753 -409 4131 149 39 35 chr9 77608840 77609564 -64661880 + LTR8A LTR ERV1 1 727 0 3567 195 46 36 chr9 77609855 77610179 -64661265 + MER21B LTR ERV1 1 320 -543 2952 9 0 0 chr9 77610179 77610497 -64660947 + AluYb8 SINE Alu 1 318 0 3567 195 46 36 chr9 77610497 77610973 -64660471 + MER21B LTR ERV1 320 809 -54 419 296 92 24 chr9 77611132 77611338 -64660106 - MIR SINE MIR -14 248 29 2231 100 3 10 chr9 77611550 77611851 -64659593 - AluSg SINE Alu -11 299 1 197 270 163 61 chr9 77612004 77612200 -64659244 - L2 LINE L2 -1 3271 3056 896 208 71 9 chr9 77612201 77612413 -64659031 + L1MB7 LINE L1 5947 6171 -13 313 264 71 65 chr9 77612422 77612577 -64658867 - L2 LINE L2 -203 3069 2914 4888 153 9 24 chr9 77612681 77613476 -64657968 + LTR39 LTR ERV1 1 783 0 520 221 47 8 chr9 77613655 77613782 -64657662 + MER21B LTR ERV1 11 142 -721 * 1557 212 90 44 chr9 77613772 77614229 -64657215 + MER21B LTR ERV1 326 803 -60 339 44 0 0 chr9 77615001 77615046 -64656398 + (CA)n Simple_repeat Simple_repeat 2 46 0 481 281 50 84 chr9 77615775 77615841 -64655603 - L3 LINE CR1 -3 1574 1507 2699 48 0 0 chr9 77615841 77616151 -64655293 - AluY SINE Alu 0 311 2 481 281 50 84 chr9 77616151 77616322 -64655122 - L3 LINE CR1 -70 1507 1345 435 319 63 46 chr9 77616367 77616605 -64654839 - MIR SINE MIR 0 262 21 1821 182 7 0 chr9 77616788 77617079 -64654365 - AluJb SINE Alu -15 297 5 334 245 10 138 chr9 77617265 77617418 -64654026 - MER5B DNA MER1_type -4 174 50 2196 59 0 15 chr9 77617418 77617691 -64653753 + AluY SINE Alu 31 299 -12 334 245 10 138 chr9 77617691 77617733 -64653711 - MER5B DNA MER1_type -128 50 4 207 260 0 97 chr9 77617766 77617848 -64653596 - MIR SINE MIR -107 101 27 2403 83 0 13 chr9 77618440 77618753 -64652691 + AluSc SINE Alu 1 309 0 326 284 124 57 chr9 77618880 77619074 -64652370 + L2 LINE L2 3106 3312 -1 358 155 107 78 chr9 77619373 77619455 -64651989 - MER5A DNA MER1_type -77 112 25 1879 155 3 7 chr9 77619455 77619758 -64651686 - AluJb SINE Alu -10 302 1 358 155 107 78 chr9 77619758 77619778 -64651666 - MER5A DNA MER1_type -164 25 7 957 176 137 0 chr9 77621435 77621617 -64649827 + AluJb SINE Alu 1 207 -105 31 0 0 0 chr9 77621766 77621797 -64649647 + AT_rich Low_complexity Low_complexity 1 31 0 858 189 59 0 chr9 77622258 77622411 -64649033 - FRAM SINE Alu -13 163 2 4162 166 111 7 chr9 77623022 77623770 -64647674 + LTR1B LTR ERV1 1 826 0 269 180 20 0 chr9 77623957 77624007 -64647437 + L2 LINE L2 3222 3272 0 2173 112 20 0 chr9 77624565 77624860 -64646584 + AluSx SINE Alu 1 301 -11 514 255 165 20 chr9 77626900 77627100 -64644344 + MIR SINE MIR 2 230 -32 1562 286 150 49 chr9 77627843 77627981 -64643463 - L2 LINE L2 0 3313 3190 279 79 0 0 chr9 77627981 77628019 -64643425 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1562 286 150 49 chr9 77628019 77629269 -64642175 - L2 LINE L2 -123 3190 1785 360 103 0 0 chr9 77629353 77629411 -64642033 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 509 300 71 12 chr9 77629454 77629624 -64641820 + MIR3 SINE MIR 20 199 -9 2345 77 0 10 chr9 77629656 77629954 -64641490 + AluSc SINE Alu 1 295 -14 555 321 75 73 chr9 77630356 77630861 -64640583 + L2 LINE L2 2807 3312 -1 2277 110 3 0 chr9 77630925 77631233 -64640211 + AluSq SINE Alu 1 309 -4 2218 117 0 0 chr9 77631950 77632248 -64639196 - AluSx SINE Alu -14 298 1 396 59 0 0 chr9 77632329 77632380 -64639064 + (TG)n Simple_repeat Simple_repeat 2 52 0 324 91 0 0 chr9 77632932 77632976 -64638468 + U5 snRNA snRNA 1 44 -72 625 338 37 14 chr9 77632990 77633201 -64638243 - L1MC4a LINE L1 -1900 5908 5684 2078 78 4 11 chr9 77633201 77633469 -64637975 - AluSp SINE Alu -36 277 12 625 338 37 14 chr9 77633469 77633609 -64637835 - L1MC4a LINE L1 -2124 5684 5549 207 240 227 0 chr9 77635150 77635225 -64636219 - L2 LINE L2 -19 3294 3203 31 0 0 0 chr9 77636078 77636109 -64635335 + AT_rich Low_complexity Low_complexity 1 31 0 1732 190 3 3 chr9 77636320 77636620 -64634824 - AluJb SINE Alu -12 300 1 2427 85 0 0 chr9 77637194 77637499 -64633945 - AluSq SINE Alu -8 305 1 1945 143 0 40 chr9 77637871 77638193 -64633251 - AluJb SINE Alu -3 309 1 2334 117 3 0 chr9 77638206 77638514 -64632930 - AluSx SINE Alu -3 309 1 277 320 200 15 chr9 77638592 77638792 -64632652 + MIR SINE MIR 13 249 -13 1913 162 0 13 chr9 77639054 77639356 -64632088 - AluJo SINE Alu -14 298 1 2314 129 74 14 chr9 77639893 77640258 -64631186 - L1PB4 LINE L1 -1 6155 5769 2168 132 6 3 chr9 77640260 77640571 -64630873 - AluSx SINE Alu 0 312 1 473 580 0 6 chr9 77640643 77640817 -64630627 + (CA)n Simple_repeat Simple_repeat 2 174 0 1565 267 46 27 chr9 77641407 77641915 -64629529 - L2 LINE L2 0 3313 2799 661 229 84 12 chr9 77641915 77642081 -64629363 + MER5B DNA MER1_type 1 178 0 1565 267 46 27 chr9 77642081 77642101 -64629343 - L2 LINE L2 -514 2799 2781 408 292 12 128 chr9 77642391 77642641 -64628803 + MIR SINE MIR 6 226 -36 2360 59 0 14 chr9 77644276 77644590 -64626854 + AluY SINE Alu 1 310 0 243 0 0 0 chr9 77644607 77644634 -64626810 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 756 302 86 51 chr9 77644767 77645641 -64625803 + L2 LINE L2 2372 3279 -34 2510 70 0 0 chr9 77645803 77646104 -64625340 + AluY SINE Alu 1 301 -10 567 291 85 23 chr9 77646235 77646452 -64624992 + MIR SINE MIR 13 237 -25 274 340 201 0 chr9 77646713 77646857 -64624587 + MIR3 SINE MIR 10 182 -26 2206 123 0 0 chr9 77647002 77647303 -64624141 - AluSx SINE Alu -7 305 5 277 306 74 19 chr9 77647354 77647462 -64623982 - MIR SINE MIR -30 232 119 284 325 172 0 chr9 77648266 77648429 -64623015 + MIR3 SINE MIR 3 193 -15 180 385 0 0 chr9 77649055 77649107 -64622337 + L2 LINE L2 2938 2989 -283 210 37 0 0 chr9 77649604 77649631 -64621813 + (TG)n Simple_repeat Simple_repeat 2 28 0 206 285 19 122 chr9 77650509 77650723 -64620721 + L2 LINE L2 2227 2418 -896 240 231 0 48 chr9 77651125 77651229 -64620215 + T-rich Low_complexity Low_complexity 2 100 0 339 44 0 0 chr9 77651667 77651712 -64619732 + (CA)n Simple_repeat Simple_repeat 2 46 0 481 281 50 84 chr9 77652441 77652507 -64618937 - L3 LINE CR1 -3 1574 1507 2699 48 0 0 chr9 77652507 77652817 -64618627 - AluY SINE Alu 0 311 2 481 281 50 84 chr9 77652817 77652988 -64618456 - L3 LINE CR1 -70 1507 1345 435 319 63 46 chr9 77653033 77653271 -64618173 - MIR SINE MIR 0 262 21 1821 182 7 0 chr9 77653454 77653745 -64617699 - AluJb SINE Alu -15 297 5 334 245 10 138 chr9 77653931 77654084 -64617360 - MER5B DNA MER1_type -4 174 50 2196 59 0 15 chr9 77654084 77654357 -64617087 + AluY SINE Alu 31 299 -12 334 245 10 138 chr9 77654357 77654399 -64617045 - MER5B DNA MER1_type -128 50 4 207 260 0 97 chr9 77654432 77654514 -64616930 - MIR SINE MIR -107 101 27 2222 98 0 16 chr9 77655106 77655411 -64616033 + AluSx SINE Alu 1 300 -12 196 392 13 13 chr9 77656296 77656375 -64615069 + L2 LINE L2 2981 3059 -254 695 177 24 61 chr9 77656541 77656627 -64614817 + L1PB4 LINE L1 5998 6077 -79 2262 107 7 0 chr9 77656627 77656927 -64614517 + AluSc SINE Alu 1 302 -7 695 177 24 61 chr9 77656927 77657004 -64614440 + L1PB4 LINE L1 6077 6155 -1 1586 210 42 23 chr9 77660021 77660374 -64611070 - MER63 DNA MER1_type 0 1061 702 2297 116 0 0 chr9 77660525 77660826 -64610618 - AluSq SINE Alu -12 301 1 2865 157 16 12 chr9 77661272 77661763 -64609681 + L1MB2 LINE L1 5677 6169 -2 180 0 0 0 chr9 77662483 77662503 -64608941 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 198 71 0 0 chr9 77662833 77662861 -64608583 + (TG)n Simple_repeat Simple_repeat 1 28 0 997 213 188 60 chr9 77662893 77663260 -64608184 - MLT2B1 LTR ERVL 0 414 1 502 331 0 58 chr9 77665118 77665375 -64606069 - MIR SINE MIR -1 261 20 2339 98 0 0 chr9 77665388 77665694 -64605750 - AluSc SINE Alu 0 309 4 414 297 125 10 chr9 77665750 77665942 -64605502 + MIR SINE MIR 36 249 -13 346 362 9 0 chr9 77666158 77666274 -64605170 + MIR3 SINE MIR 15 131 -77 208 318 141 0 chr9 77666962 77667047 -64604397 + MIR SINE MIR 47 143 -119 2888 82 25 0 chr9 77667596 77667951 -64603493 - THE1B LTR MaLR 0 364 1 1201 148 19 19 chr9 77668775 77668991 -64602453 - L1MA9 LINE L1 -199 6113 5898 222 368 32 0 chr9 77670578 77670673 -64600771 + MIR SINE MIR 56 153 -109 1263 138 65 97 chr9 77671022 77671312 -64600132 + AluJo SINE Alu 1 281 -31 321 118 0 0 chr9 77671323 77671374 -64600070 + (CA)n Simple_repeat Simple_repeat 2 52 0 688 252 92 46 chr9 77671376 77671577 -64599867 + MIR SINE MIR 4 219 -43 2447 58 0 35 chr9 77671577 77671889 -64599555 + AluY SINE Alu 1 301 -10 688 252 92 46 chr9 77671889 77671925 -64599519 + MIR SINE MIR 219 252 -10 1053 179 10 46 chr9 77672112 77672307 -64599137 - MER5A DNA MER1_type -1 188 1 505 299 129 9 chr9 77672382 77672599 -64598845 - MIR SINE MIR -14 248 6 1222 193 119 28 chr9 77672771 77673056 -64598388 - AluJb SINE Alu -1 311 1 292 278 139 0 chr9 77673299 77673407 -64598037 - MLT1H LTR MaLR -327 222 100 357 143 0 0 chr9 77673407 77673461 -64597983 - Alu SINE Alu -253 48 1 411 344 31 5 chr9 77673743 77673935 -64597509 - LTR33 LTR ERVL -322 199 3 31 58 0 0 chr9 77676324 77676376 -64595068 + AT_rich Low_complexity Low_complexity 1 52 0 2966 44 0 0 chr9 77678084 77678426 -64593018 + L1PA5 LINE L1 5813 6154 0 189 0 0 0 chr9 77678963 77678984 -64592460 + (TA)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr9 77679562 77679584 -64591860 + AT_rich Low_complexity Low_complexity 1 22 0 2395 95 3 0 chr9 77680628 77680933 -64590511 - AluSx SINE Alu -6 306 1 613 275 158 30 chr9 77682039 77682240 -64589204 - L2 LINE L2 -32 3281 3107 3494 56 5 0 chr9 77682240 77682648 -64588796 + L1PA7 LINE L1 5745 6154 0 613 275 158 30 chr9 77682648 77682781 -64588663 - L2 LINE L2 -206 3107 2904 432 269 0 35 chr9 77683418 77683563 -64587881 - LTR26E LTR ERV1 -16 606 467 348 24 0 0 chr9 77683563 77683604 -64587840 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1701 93 5 0 chr9 77684124 77684340 -64587104 - AluSx SINE Alu -95 217 1 1033 216 125 76 chr9 77685934 77686475 -64584969 + LTR8A LTR ERV1 1 583 -144 1148 151 57 5 chr9 77686476 77686688 -64584756 + AluSq SINE Alu 1 223 -90 192 77 0 0 chr9 77687753 77687779 -64583665 + (TC)n Simple_repeat Simple_repeat 1 26 0 193 318 0 0 chr9 77687817 77687861 -64583583 + L2 LINE L2 3220 3263 -9 2552 53 0 3 chr9 77688701 77689001 -64582443 + AluY SINE Alu 1 299 -12 282 167 74 0 chr9 77689192 77689246 -64582198 - MER91C DNA MER1_type -32 108 51 1945 163 54 21 chr9 77689443 77689774 -64581670 - MER2 DNA MER2_type -2 342 1 2009 152 0 0 chr9 77689937 77690226 -64581218 - AluSx SINE Alu -23 289 1 219 233 62 85 chr9 77690691 77690820 -64580624 - L2 LINE L2 -167 3105 2980 660 263 8 65 chr9 77690872 77690898 -64580546 + L1MC5 LINE L1 7703 7729 -313 402 39 0 0 chr9 77690898 77690950 -64580494 + (CA)n Simple_repeat Simple_repeat 2 53 0 660 263 8 65 chr9 77690950 77691115 -64580329 + L1MC5 LINE L1 7729 7958 -84 2088 212 71 5 chr9 77691115 77691553 -64579891 + MLT1C LTR MaLR 1 467 0 660 263 8 65 chr9 77691553 77691633 -64579811 + L1MC5 LINE L1 7958 8041 -1 183 200 0 133 chr9 77692553 77692628 -64578816 + MIR SINE MIR 113 177 -85 557 331 69 48 chr9 77693316 77693652 -64577792 + L2 LINE L2 2829 3178 -94 2265 85 7 0 chr9 77693652 77693961 -64577483 - AluSg SINE Alu 0 311 1 557 331 69 48 chr9 77693961 77694058 -64577386 + L2 LINE L2 3178 3272 0 318 232 6 140 chr9 77694147 77694311 -64577133 - MER5A DNA MER1_type -7 182 41 * 365 240 0 13 chr9 77694261 77694336 -64577108 + MER5A DNA MER1_type 113 186 -3 496 291 19 19 chr9 77695260 77695418 -64576026 + MIR3 SINE MIR 37 194 -14 1789 136 48 4 chr9 77695519 77695791 -64575653 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr9 77695796 77695817 -64575627 + (CA)n Simple_repeat Simple_repeat 2 22 0 21 57 0 0 chr9 77696959 77696994 -64574450 + AT_rich Low_complexity Low_complexity 1 35 0 2169 96 0 0 chr9 77697209 77697525 -64573919 - AluSc SINE Alu 0 316 1 219 148 19 37 chr9 77698236 77698290 -64573154 + CT-rich Low_complexity Low_complexity 3 55 0 3075 270 126 39 chr9 77700190 77700504 -64570940 - L1MEc LINE L1 -1730 4485 4200 2317 102 0 3 chr9 77700504 77700808 -64570636 + AluSx SINE Alu 1 303 -9 3075 270 126 39 chr9 77700808 77700892 -64570552 - L1MEc LINE L1 -2015 4200 4125 2297 80 10 10 chr9 77700892 77701203 -64570241 - AluY SINE Alu 0 311 1 3075 270 126 39 chr9 77701203 77703452 -64567992 - L1MEc LINE L1 -2090 4125 1624 2133 69 4 0 chr9 77703458 77703719 -64567725 + AluY SINE Alu 1 262 -49 381 258 210 56 chr9 77704803 77704883 -64566561 - MIR SINE MIR -19 243 177 1125 235 157 20 chr9 77704883 77705279 -64566165 - MLT1J2 LTR MaLR 0 450 1 381 258 210 56 chr9 77705279 77705411 -64566033 - MIR SINE MIR -85 177 1 2418 89 7 0 chr9 77706471 77706773 -64564671 - AluSq SINE Alu -9 304 1 419 263 59 46 chr9 77706809 77707151 -64564293 - L1M3de LINE L1 -4676 1460 1055 185 159 0 45 chr9 77707402 77707446 -64563998 + L2 LINE L2 1823 1864 -1450 1019 249 5 0 chr9 77707494 77707695 -64563749 - MER58A DNA MER1_type -22 202 1 2202 112 0 3 chr9 77708106 77708409 -64563035 - AluSx SINE Alu -10 302 1 719 324 55 41 chr9 77708567 77709209 -64562235 + L2 LINE L2 2619 3272 0 253 270 45 27 chr9 77709249 77709360 -64562084 - MIR SINE MIR -55 207 95 346 136 0 51 chr9 77710283 77710342 -64561102 - L2 LINE L2 -2 3311 3256 467 111 0 12 chr9 77711386 77711467 -64559977 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 349 196 134 21 chr9 77711745 77711842 -64559602 - MIR SINE MIR -62 146 39 419 236 98 16 chr9 77712096 77712219 -64559225 - L2 LINE L2 -1 3312 3180 572 267 61 117 chr9 77712523 77712690 -64558754 + MER102b DNA MER1_type 2 140 -1288 2355 84 0 3 chr9 77712690 77712986 -64558458 - AluY SINE Alu -16 295 1 572 267 61 117 chr9 77712986 77713177 -64558267 + MER102b DNA MER1_type 140 340 -1 2252 197 22 5 chr9 77713340 77713412 -64558032 + MLT1C LTR MaLR 45 114 -353 1849 163 3 3 chr9 77713412 77713713 -64557731 + AluJb SINE Alu 1 301 -11 2252 197 22 5 chr9 77713713 77714056 -64557388 + MLT1C LTR MaLR 114 467 0 293 296 35 9 chr9 77715036 77715151 -64556293 - L3 LINE CR1 -65 1512 1395 221 284 86 12 chr9 77715383 77715464 -64555980 - L2 LINE L2 -18 3254 3168 2302 105 3 0 chr9 77716970 77717274 -64554170 + AluSx SINE Alu 1 305 -7 1495 102 0 0 chr9 77717831 77718017 -64553427 - AluSq SINE Alu -127 186 1 258 255 6 204 chr9 77718267 77718350 -64553094 - MIR3 SINE MIR -46 162 123 1856 157 0 50 chr9 77718350 77718668 -64552776 + AluJb SINE Alu 1 302 -10 258 255 6 204 chr9 77718668 77718741 -64552703 - MIR3 SINE MIR -85 123 37 2301 110 0 0 chr9 77719279 77719579 -64551865 - AluSx SINE Alu -12 300 1 361 220 0 92 chr9 77719980 77720089 -64551355 + MIR SINE MIR 31 129 -133 2182 114 0 3 chr9 77720217 77720516 -64550928 - AluSg SINE Alu -12 298 1 2361 88 0 0 chr9 77722271 77722568 -64548876 + AluSq SINE Alu 1 297 -16 6789 83 24 9 chr9 77722579 77723479 -64547965 + L1P3 LINE L1 1 914 -5547 6843 58 19 6 chr9 77723525 77725053 -64546391 + L1PA7 LINE L1 4600 6150 -4 2429 89 3 0 chr9 77725298 77725600 -64545844 - AluSq SINE Alu -10 303 1 2175 168 87 2 chr9 77725741 77726134 -64545310 + MSTB LTR MaLR 1 426 0 749 152 0 43 chr9 77726455 77726593 -64544851 + FLAM_C SINE Alu 2 133 0 1949 152 7 3 chr9 77728054 77728356 -64543088 - AluSx SINE Alu -9 303 1 194 303 28 70 chr9 77728811 77728953 -64542491 - MIR SINE MIR -79 183 48 285 156 203 0 chr9 77729036 77729100 -64542344 - LTR16C LTR ERVL -25 466 390 631 206 178 11 chr9 77729197 77729377 -64542067 - MER63A DNA MER1_type 0 210 1 266 349 9 0 chr9 77729418 77729524 -64541920 - LTR16C LTR ERVL -353 138 32 374 254 30 91 chr9 77730248 77730445 -64540999 + LTR33 LTR ERVL 33 217 -304 361 261 65 14 chr9 77730509 77730647 -64540797 + LTR33 LTR ERVL 377 521 0 2561 69 0 0 chr9 77731025 77731330 -64540114 - AluY SINE Alu -6 305 1 1819 193 41 67 chr9 77731422 77731884 -64539560 + Charlie1a DNA MER1_type 16 465 -990 964 123 59 71 chr9 77731882 77732076 -64539368 + Charlie1a DNA MER1_type 1205 1397 -1364 * 2344 85 0 23 chr9 77732076 77732382 -64539062 - AluSg SINE Alu -11 299 1 964 123 59 71 chr9 77732382 77732440 -64539004 + Charlie1a DNA MER1_type 1397 1454 -1 1630 142 89 39 chr9 77732519 77732733 -64538711 - L1MB5 LINE L1 0 6174 5935 2327 105 0 3 chr9 77732733 77733037 -64538407 - AluSg SINE Alu -7 303 1 1630 142 89 39 chr9 77733037 77733159 -64538285 - L1MB5 LINE L1 -239 5935 5821 27 0 0 0 chr9 77733159 77733186 -64538258 + AT_rich Low_complexity Low_complexity 1 27 0 2452 129 42 40 chr9 77733521 77733948 -64537496 - MSTA LTR MaLR 0 428 1 209 337 22 0 chr9 77734033 77734125 -64537319 + MIR SINE MIR 37 130 -78 407 253 105 12 chr9 77734199 77734361 -64537083 + MER113 DNA MER1_type? 19 195 -326 652 156 62 0 chr9 77734885 77735013 -64536431 + MLT1H LTR MaLR 39 174 -375 273 287 43 0 chr9 77735013 77735107 -64536337 + MIR SINE MIR 164 261 -1 306 243 64 86 chr9 77735471 77735611 -64535833 - MIR SINE MIR -32 230 94 230 307 44 35 chr9 77735899 77736013 -64535431 - MIR SINE MIR -59 149 35 662 283 26 0 chr9 77736770 77736961 -64534483 + MIR SINE MIR 2 197 -65 2321 84 0 32 chr9 77737014 77737324 -64534120 + AluSc SINE Alu 1 300 -9 280 286 0 12 chr9 77737382 77737466 -64533978 - MIR SINE MIR -130 132 50 341 232 21 78 chr9 77738088 77738230 -64533214 - MIR SINE MIR -25 237 104 892 269 44 50 chr9 77738617 77738990 -64532454 + MLT1I LTR MaLR 51 391 -18 33 35 0 17 chr9 77739393 77739413 -64532031 + AT_rich Low_complexity Low_complexity 1 20 -37 2248 96 0 3 chr9 77739413 77739695 -64531749 + AluSc SINE Alu 1 281 -28 33 35 0 17 chr9 77739695 77739732 -64531712 + AT_rich Low_complexity Low_complexity 20 57 0 2173 111 0 29 chr9 77739953 77740268 -64531176 - AluSx SINE Alu -6 306 1 1775 151 50 0 chr9 77740457 77740736 -64530708 - AluJo SINE Alu -19 293 1 393 305 149 19 chr9 77740972 77741126 -64530318 + MER5A DNA MER1_type 16 189 0 479 284 57 0 chr9 77741220 77741361 -64530083 + MIR SINE MIR 56 204 -58 430 244 23 38 chr9 77742872 77743035 -64528409 + MIR SINE MIR 24 144 -64 180 301 164 0 chr9 77743376 77743449 -64527995 + MIR SINE MIR 37 121 -87 294 302 128 28 chr9 77743473 77743794 -64527650 + L1ME4a LINE L1 5568 5920 -201 1565 169 0 77 chr9 77744054 77744392 -64527052 + AluJo SINE Alu 1 312 0 2210 103 3 20 chr9 77745855 77746157 -64525287 + AluSx SINE Alu 1 297 -15 2080 103 26 0 chr9 77746894 77747189 -64524255 - AluSg SINE Alu 0 305 4 256 204 10 78 chr9 77747651 77747754 -64523690 + CT-rich Low_complexity Low_complexity 2 97 0 365 263 35 68 chr9 77748418 77748515 -64522929 + MIR SINE MIR 14 96 -156 2262 116 0 19 chr9 77748515 77748833 -64522611 - AluSx SINE Alu 0 312 1 365 263 35 68 chr9 77748833 77748925 -64522519 + MIR SINE MIR 96 189 -63 466 264 90 36 chr9 77749119 77749286 -64522158 - MIR SINE MIR -85 177 2 205 263 0 79 chr9 77750734 77750810 -64520634 - L2 LINE L2 -43 3229 3160 309 311 44 0 chr9 77751628 77751718 -64519726 - MER91C DNA MER1_type 0 140 47 2311 85 0 0 chr9 77754696 77755005 -64516439 - AluSx SINE Alu 0 309 1 431 278 166 0 chr9 77758017 77758168 -64513276 + MER5A DNA MER1_type 13 188 -1 210 167 0 100 chr9 77758233 77758293 -64513151 + L2 LINE L2 2889 2942 -330 490 256 30 67 chr9 77758357 77758521 -64512923 + MER5B DNA MER1_type 9 166 -12 662 250 11 28 chr9 77758530 77758710 -64512734 - MER5A DNA MER1_type -3 186 10 480 296 23 86 chr9 77758729 77758986 -64512458 + L2 LINE L2 3027 3267 -5 1684 192 104 72 chr9 77759589 77759812 -64511632 - MLT1D LTR MaLR 0 505 291 2188 126 3 0 chr9 77759812 77760122 -64511322 - AluSq SINE Alu 0 313 3 1684 192 104 72 chr9 77760122 77760387 -64511057 - MLT1D LTR MaLR -214 291 1 525 191 5 162 chr9 77760489 77760693 -64510751 + MER5B DNA MER1_type 7 178 0 1781 165 58 36 chr9 77761074 77761437 -64510007 + MLT1A2 LTR MaLR 4 374 0 329 312 14 35 chr9 77761462 77761603 -64509841 - MIR3 SINE MIR -29 179 42 215 184 0 0 chr9 77761675 77761713 -64509731 - L2 LINE L2 -86 3186 3149 381 283 55 29 chr9 77761794 77761820 -64509624 + MIR SINE MIR 45 69 -193 1026 258 157 38 chr9 77761820 77762316 -64509128 + MLT1H1 LTR MaLR 1 555 0 381 283 55 29 chr9 77762316 77762457 -64508987 + MIR SINE MIR 69 210 -52 190 279 90 63 chr9 77763014 77763125 -64508319 + MIR SINE MIR 77 190 -72 21 0 0 0 chr9 77763197 77763218 -64508226 + AT_rich Low_complexity Low_complexity 1 21 0 478 255 51 44 chr9 77764384 77764592 -64506852 - MIR SINE MIR -8 254 47 198 103 0 0 chr9 77765508 77765537 -64505907 + (A)n Simple_repeat Simple_repeat 1 29 0 228 219 42 76 chr9 77766526 77766645 -64504799 + L2 LINE L2 3182 3296 -17 1130 188 126 15 chr9 77767549 77767820 -64503624 + MER39 LTR ERV1 407 707 0 558 299 107 25 chr9 77767821 77768393 -64503051 - L2 LINE L2 -129 3184 2514 427 288 38 64 chr9 77768885 77769121 -64502323 - MIR SINE MIR -3 259 30 209 240 0 0 chr9 77770119 77770169 -64501275 + L2 LINE L2 3223 3272 0 1937 146 9 19 chr9 77770383 77770698 -64500746 + AluSx SINE Alu 1 312 0 1214 202 116 134 chr9 77770899 77771384 -64500060 + MLT1C LTR MaLR 27 464 -3 1872 127 14 28 chr9 77771392 77771683 -64499761 + AluSx SINE Alu 12 298 -14 2236 80 31 10 chr9 77771683 77771972 -64499472 + AluY SINE Alu 1 295 -16 1770 138 214 8 chr9 77772750 77773105 -64498339 + MSTA LTR MaLR 1 428 0 391 336 7 0 chr9 77774182 77774331 -64497113 + L1ME LINE L1 5583 5732 -389 1664 169 4 0 chr9 77774331 77774597 -64496847 + AluJo SINE Alu 1 267 -45 1276 134 9 27 chr9 77774647 77774871 -64496573 - L1MC2 LINE L1 -324 6020 5801 286 313 90 7 chr9 77774878 77775022 -64496422 + MIR SINE MIR 101 256 -6 2378 181 87 13 chr9 77775051 77775521 -64495923 + MLT1D LTR MaLR 1 505 0 233 270 20 60 chr9 77775594 77775694 -64495750 + MLT2E LTR ERVL 40 135 -493 342 160 44 37 chr9 77775940 77776048 -64495396 + LTR67 LTR ERVL 421 557 0 856 176 0 0 chr9 77776333 77776469 -64494975 + FRAM SINE Alu 28 163 -13 459 174 10 51 chr9 77776487 77776585 -64494859 + MER31A LTR ERV1 354 447 -38 24 0 0 0 chr9 77776892 77776916 -64494528 + AT_rich Low_complexity Low_complexity 1 24 0 257 0 30 0 chr9 77777155 77777188 -64494256 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2273 90 0 7 chr9 77777191 77777479 -64493965 - AluSx SINE Alu -25 287 2 1323 235 36 21 chr9 77777480 77777816 -64493628 - MER58B DNA MER1_type 0 341 1 206 412 65 0 chr9 77778054 77778224 -64493220 + L2 LINE L2 2862 3042 -230 373 258 18 72 chr9 77779713 77779880 -64491564 - L1MEd LINE L1 -5935 184 27 2431 76 7 0 chr9 77779925 77780227 -64491217 - AluSq SINE Alu -7 306 3 700 224 0 0 chr9 77780240 77780365 -64491079 + FLAM_C SINE Alu 1 125 -8 226 170 0 19 chr9 77780433 77780486 -64490958 + T-rich Low_complexity Low_complexity 2 53 0 901 229 16 5 chr9 77782077 77782265 -64489179 - MLT1B LTR MaLR 0 390 201 210 71 0 0 chr9 77782494 77782522 -64488922 + (A)n Simple_repeat Simple_repeat 1 28 0 273 209 67 38 chr9 77784610 77784715 -64486729 - MIR SINE MIR -54 208 101 216 0 0 0 chr9 77784812 77784836 -64486608 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2202 92 11 0 chr9 77784840 77785123 -64486321 - AluSc SINE Alu -23 286 1 518 308 86 39 chr9 77785124 77785507 -64485937 - MLT1K LTR MaLR -42 546 146 1859 148 10 26 chr9 77786105 77786415 -64485029 - AluJb SINE Alu -7 305 1 30 45 0 0 chr9 77786416 77786460 -64484984 + AT_rich Low_complexity Low_complexity 1 44 0 459 304 33 12 chr9 77786598 77786838 -64484606 - L1M4 LINE L1 -1517 4629 4385 8247 19 5 0 chr9 77786838 77788413 -64483031 - L1PA4 LINE L1 -5 6150 4571 610 205 26 13 chr9 77788581 77788732 -64482712 - L1MB7 LINE L1 -7 6177 6025 1782 180 10 0 chr9 77788776 77789076 -64482368 + AluJo SINE Alu 1 303 -9 1693 186 3 16 chr9 77789283 77789589 -64481855 + AluJo SINE Alu 3 304 -8 2145 136 0 0 chr9 77789609 77789911 -64481533 + AluSx SINE Alu 11 312 0 382 343 127 16 chr9 77789920 77790305 -64481139 + L1ME3 LINE L1 5427 5854 -308 352 294 17 40 chr9 77790336 77790513 -64480931 + HAL1 LINE L1 2303 2475 -32 777 200 16 0 chr9 77791349 77791474 -64479970 + FLAM_C SINE Alu 1 127 -6 319 296 114 23 chr9 77791716 77791848 -64479596 + L2 LINE L2 3129 3272 0 218 225 51 94 chr9 77792172 77792310 -64479134 + L2 LINE L2 3002 3133 -180 477 199 73 22 chr9 77792366 77792502 -64478942 + L1ME3 LINE L1 6016 6158 -4 1600 205 30 51 chr9 77792620 77792995 -64478449 + MLT1B LTR MaLR 2 370 -20 2848 72 50 6 chr9 77792995 77793354 -64478090 - THE1C LTR MaLR 0 375 1 1600 205 30 51 chr9 77793354 77793373 -64478071 + MLT1B LTR MaLR 370 388 -2 1200 296 71 10 chr9 77793377 77793772 -64477672 + LTR16B LTR ERVL 46 464 0 1014 249 76 82 chr9 77794738 77795253 -64476191 + L2 LINE L2 1264 1775 -1539 219 69 0 0 chr9 77796169 77796198 -64475246 + (TC)n Simple_repeat Simple_repeat 1 29 0 535 281 71 30 chr9 77796414 77796681 -64474763 - L1MC4 LINE L1 -131 7911 7634 227 170 0 0 chr9 77796694 77796741 -64474703 + L1MC4 LINE L1 6652 6698 -1344 2429 88 3 0 chr9 77796741 77797046 -64474398 - AluSq SINE Alu -7 306 1 237 196 0 0 chr9 77797051 77797102 -64474342 + (TA)n Simple_repeat Simple_repeat 1 51 0 2329 70 0 3 chr9 77797166 77797452 -64473992 - AluY SINE Alu -22 289 5 1560 232 61 103 chr9 77798039 77798991 -64472453 - L1MC5 LINE L1 -393 7415 6567 * 14035 178 27 49 chr9 77798986 77802177 -64469267 + L1P3 LINE L1 832 3964 -2497 622 284 71 0 chr9 77802167 77802350 -64469094 + L1ME1 LINE L1 5956 6151 -15 * 259 300 14 29 chr9 77802371 77802511 -64468933 - L1MC4a LINE L1 -1213 6595 6458 228 233 0 0 chr9 77802511 77802554 -64468890 - Tigger7 DNA MER2_type 0 2487 2445 1866 164 88 32 chr9 77802569 77802942 -64468502 - LTR47A LTR ERVL -55 397 4 333 229 0 0 chr9 77802945 77803006 -64468438 - Tigger7 DNA MER2_type -38 2449 2389 * 1452 223 8 0 chr9 77803004 77803269 -64468175 - Tigger7 DNA MER2_type -466 267 1 2332 99 0 13 chr9 77803508 77803822 -64467622 + AluSx SINE Alu 1 310 -2 840 265 142 19 chr9 77803848 77804221 -64467223 - L1MC4a LINE L1 -1639 6169 5751 21 36 0 0 chr9 77804242 77804270 -64467174 + AT_rich Low_complexity Low_complexity 1 28 0 2262 96 0 23 chr9 77804411 77804714 -64466730 - AluSx SINE Alu -11 301 6 295 216 93 31 chr9 77805142 77805239 -64466205 - L1ME4a LINE L1 -233 5888 5786 1071 281 113 37 chr9 77805349 77806046 -64465398 - HAL1 LINE L1 -1415 1092 343 828 194 0 11 chr9 77806093 77806277 -64465167 - L1MA6 LINE L1 0 6297 6123 468 253 87 91 chr9 77806277 77806530 -64464914 - HAL1 LINE L1 -2216 291 40 250 338 56 0 chr9 77806640 77806782 -64464662 - L1ME4a LINE L1 -315 5806 5657 226 149 64 32 chr9 77806872 77806966 -64464478 + (TA)n Simple_repeat Simple_repeat 2 98 0 847 190 106 0 chr9 77807100 77807242 -64464202 - AluJo SINE Alu -149 163 7 2017 113 0 24 chr9 77807528 77807821 -64463623 + AluSx SINE Alu 11 296 -16 223 167 0 0 chr9 77808947 77808983 -64462461 - L2 LINE L2 -12 3260 3225 2185 104 21 0 chr9 77810071 77810360 -64461084 + AluSx SINE Alu 1 295 -17 898 167 30 143 chr9 77810523 77810638 -64460806 - L1MC5 LINE L1 -589 7372 7246 2084 122 7 0 chr9 77810638 77810926 -64460518 - AluSx SINE Alu -22 290 1 898 167 30 143 chr9 77810926 77811181 -64460263 - L1MC5 LINE L1 -715 7246 7044 1322 292 57 42 chr9 77811227 77811964 -64459480 - L1MCc LINE L1 -4510 2612 1865 672 283 101 20 chr9 77813549 77814055 -64457389 - L1MCc LINE L1 -4887 1536 1115 688 296 111 0 chr9 77814420 77814717 -64456727 - L1MC4a LINE L1 -1894 5914 5585 298 379 43 41 chr9 77814732 77815101 -64456343 - L2 LINE L2 -337 2977 2608 836 314 62 16 chr9 77815475 77815860 -64455584 - MLT1I LTR MaLR 0 409 7 351 210 49 0 chr9 77816279 77816360 -64455084 + MIR SINE MIR 93 177 -85 1639 191 7 13 chr9 77817502 77817806 -64453638 - AluJo SINE Alu -10 302 1 2236 100 0 27 chr9 77818349 77818677 -64452767 + AluSx SINE Alu 1 320 0 929 295 134 13 chr9 77818983 77819363 -64452081 + L2 LINE L2 2886 3311 -2 314 283 33 17 chr9 77819588 77819708 -64451736 + LTR67 LTR ERVL 435 556 -1 2155 105 0 3 chr9 77819871 77820157 -64451287 + AluSg SINE Alu 23 307 -3 222 394 10 0 chr9 77821498 77821597 -64449847 - L2 LINE L2 -379 2935 2836 832 169 138 67 chr9 77822112 77822196 -64449248 - MER3 DNA MER1_type 0 209 132 2036 162 106 8 chr9 77822196 77822555 -64448889 - MSTD LTR MaLR 0 396 3 832 169 138 67 chr9 77822555 77822665 -64448779 - MER3 DNA MER1_type -77 132 1 2245 116 3 0 chr9 77822724 77823035 -64448409 + AluSx SINE Alu 1 312 0 24 0 0 0 chr9 77823171 77823195 -64448249 + AT_rich Low_complexity Low_complexity 1 24 0 278 342 82 6 chr9 77823212 77823370 -64448074 + L2 LINE L2 1458 1627 -1687 1003 192 34 34 chr9 77823413 77824144 -64447300 - L1MD2 LINE L1 -36 6603 5700 1014 171 0 11 chr9 77824144 77824325 -64447119 - FRAM SINE Alu -4 172 1 814 163 77 64 chr9 77824325 77824593 -64446851 - L1MD2 LINE L1 -743 5683 5423 319 127 55 0 chr9 77824603 77824658 -64446786 - L1MD2 LINE L1 -4373 2053 1996 353 233 0 0 chr9 77824661 77824751 -64446693 - L1MC4 LINE L1 -1339 6703 6614 290 247 0 0 chr9 77824673 77824762 -64446682 + L1MC4 LINE L1 6614 6702 -1340 * 2191 95 0 3 chr9 77824762 77825058 -64446386 - AluSq SINE Alu -18 295 1 660 339 90 28 chr9 77825214 77825911 -64445533 + L2 LINE L2 2443 3238 -34 358 297 138 7 chr9 77825958 77826103 -64445341 + L2 LINE L2 3109 3272 0 380 320 19 0 chr9 77826934 77827037 -64444407 + L2 LINE L2 765 869 -2445 3123 72 80 0 chr9 77827054 77827469 -64443975 - LTR2B LTR ERV1 -42 448 1 548 120 0 192 chr9 77827469 77827516 -64443928 - HERVL66 LTR ERVL -4124 205 195 11256 34 0 49 chr9 77827516 77828972 -64442472 - SVA Other Other -1 1385 1 548 120 0 192 chr9 77828972 77829049 -64442395 - HERVL66 LTR ERVL -4134 195 105 312 182 0 0 chr9 77829049 77829104 -64442340 + LTR3b LTR ERVK 1 55 -445 426 183 0 0 chr9 77829105 77829176 -64442268 - LTR7 LTR ERV1 -2 448 378 542 328 89 66 chr9 77829176 77829692 -64441752 + L2 LINE L2 858 1385 -1929 24 0 0 0 chr9 77830302 77830326 -64441118 + AT_rich Low_complexity Low_complexity 1 24 0 1765 122 40 4 chr9 77830326 77830604 -64440840 - AluSx SINE Alu -24 288 1 27 73 0 0 chr9 77830609 77830664 -64440780 + AT_rich Low_complexity Low_complexity 1 55 0 415 271 56 44 chr9 77830723 77831009 -64440435 - L1MC5 LINE L1 -32 7929 7637 867 186 129 0 chr9 77831009 77831202 -64440242 - MER20 DNA MER1_type -1 218 1 415 271 56 44 chr9 77831202 77831255 -64440189 - L1MC5 LINE L1 -324 7637 7586 2129 94 0 0 chr9 77831258 77831565 -64439879 - AluSx SINE Alu 0 315 9 3649 177 12 15 chr9 77831576 77832295 -64439149 - L1MA7 LINE L1 0 6291 5575 2061 133 0 0 chr9 77832450 77832752 -64438692 - AluSx SINE Alu -10 302 1 474 119 0 0 chr9 77833428 77833495 -64437949 + AluS SINE Alu 2 68 -245 356 277 111 51 chr9 77833505 77833758 -64437686 + L1M4 LINE L1 4072 4339 -1807 423 240 16 0 chr9 77833871 77834000 -64437444 + L1M4 LINE L1 4457 4587 -1559 1796 151 0 41 chr9 77834558 77834877 -64436567 + AluJb SINE Alu 1 306 -6 1414 277 73 69 chr9 77834880 77835103 -64436341 + L1MC4a LINE L1 3331 3552 -2594 2306 86 0 0 chr9 77835103 77835395 -64436049 + AluSg SINE Alu 1 292 -18 1414 277 73 69 chr9 77835395 77835707 -64435737 + L1MC4a LINE L1 3552 3861 -2285 1832 124 37 25 chr9 77835707 77836030 -64435414 + L1MA7 LINE L1 5959 6285 -6 1414 277 73 69 chr9 77836030 77836652 -64434792 + L1MC4a LINE L1 3861 4494 -1652 375 258 121 61 chr9 77836833 77836965 -64434479 - LTR67 LTR ERVL -336 221 82 230 286 23 91 chr9 77837375 77837463 -64433981 + L1MC4a LINE L1 4487 4579 -1567 1993 121 23 3 chr9 77837463 77837769 -64433675 - AluSx SINE Alu 0 312 1 230 286 23 91 chr9 77837769 77837900 -64433544 + L1MC4a LINE L1 4579 4691 -1455 380 289 98 69 chr9 77838228 77838474 -64432970 + L1MC4a LINE L1 5679 5931 -1877 210 177 51 114 chr9 77838480 77838559 -64432885 - MIR SINE MIR -81 181 108 4110 233 115 5 chr9 77838587 77839709 -64431735 - L2 LINE L2 -338 2976 1732 1225 125 0 5 chr9 77839810 77839994 -64431450 - AluSq SINE Alu -130 183 1 494 250 0 17 chr9 77840588 77840708 -64430736 - MER5A DNA MER1_type -65 124 7 1288 153 25 33 chr9 77840717 77840958 -64430486 + MLT2B3 LTR ERVL 1 239 -315 2273 95 3 0 chr9 77841212 77841516 -64429928 + AluSx SINE Alu 2 306 -6 450 256 141 58 chr9 77841580 77841800 -64429644 - L1ME4a LINE L1 0 6121 5858 1983 122 7 3 chr9 77841800 77842094 -64429350 - AluSc SINE Alu -14 295 1 450 256 141 58 chr9 77842094 77842236 -64429208 - L1ME4a LINE L1 -263 5858 5729 2311 88 0 3 chr9 77842454 77842762 -64428682 + AluY SINE Alu 1 307 -4 780 167 0 0 chr9 77846573 77846693 -64424751 + FLAM_C SINE Alu 2 121 -22 180 97 0 0 chr9 77848653 77848684 -64422760 + (CGG)n Simple_repeat Simple_repeat 1 31 0 180 77 0 0 chr9 77848874 77848900 -64422544 + (CGG)n Simple_repeat Simple_repeat 3 28 0 270 95 0 0 chr9 77848955 77848997 -64422447 + (CCG)n Simple_repeat Simple_repeat 2 43 0 255 31 0 0 chr9 77849130 77849162 -64422282 + (CGG)n Simple_repeat Simple_repeat 3 34 0 361 132 13 13 chr9 77849169 77849245 -64422199 + (TGG)n Simple_repeat Simple_repeat 2 77 0 235 294 35 12 chr9 77851744 77851829 -64419615 + MIR3 SINE MIR 97 183 -25 216 337 99 0 chr9 77853967 77854068 -64417376 + MIR SINE MIR 20 130 -78 359 223 143 27 chr9 77854487 77854599 -64416845 + MIR SINE MIR 19 143 -65 196 279 0 0 chr9 77854668 77854711 -64416733 - L2 LINE L2 -5 3308 3266 606 255 14 71 chr9 77858114 77858326 -64413118 + MLT1F LTR MaLR 5 204 -338 185 95 0 71 chr9 77858418 77858460 -64412984 + (GA)n Simple_repeat Simple_repeat 1 39 0 525 250 105 38 chr9 77858498 77858751 -64412693 + MLT1F1 LTR MaLR 303 567 0 2210 110 0 0 chr9 77859426 77859725 -64411719 - AluSg SINE Alu -11 299 1 252 0 0 0 chr9 77859728 77859756 -64411688 + (T)n Simple_repeat Simple_repeat 1 28 0 453 265 118 33 chr9 77860045 77860086 -64411358 + MIR SINE MIR 26 62 -200 2079 106 10 7 chr9 77860086 77860389 -64411055 - AluSq SINE Alu -9 304 1 453 265 118 33 chr9 77860389 77860558 -64410886 + MIR SINE MIR 62 254 -8 182 373 22 40 chr9 77860925 77861153 -64410291 + L2 LINE L2 2863 3086 -186 818 228 74 86 chr9 77861289 77861456 -64409988 - MER5C DNA MER1_type 0 324 161 2186 102 30 0 chr9 77861456 77861760 -64409684 - AluSq SINE Alu 0 313 1 818 228 74 86 chr9 77861760 77861916 -64409528 - MER5C DNA MER1_type -163 161 5 1687 185 13 0 chr9 77862178 77862480 -64408964 + AluSx SINE Alu 1 306 -6 28 0 0 0 chr9 77862584 77862612 -64408832 + AT_rich Low_complexity Low_complexity 1 28 0 200 227 0 0 chr9 77862717 77862761 -64408683 + (TTAA)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr9 77862893 77862925 -64408519 + AT_rich Low_complexity Low_complexity 1 32 0 2133 110 0 3 chr9 77863002 77863302 -64408142 - AluSq SINE Alu -14 299 1 983 113 0 0 chr9 77863305 77863438 -64408006 - AluSq/x SINE Alu -180 133 1 1028 241 217 35 chr9 77863585 77864025 -64407419 - MLT1G1 LTR MaLR -6 536 71 2040 128 0 3 chr9 77864104 77864402 -64407042 - AluSq SINE Alu -16 297 1 260 318 66 50 chr9 77864479 77864677 -64406767 + MIR SINE MIR 6 206 -56 2020 138 0 22 chr9 77866205 77866524 -64404920 - AluJb SINE Alu 0 312 1 581 234 62 109 chr9 77866767 77867024 -64404420 + MLT1J LTR MaLR 234 478 -33 1783 141 0 48 chr9 77867310 77867622 -64403822 - AluJb SINE Alu -11 301 5 1900 160 7 0 chr9 77868121 77868428 -64403016 + AluJo SINE Alu 1 309 -3 349 221 179 35 chr9 77868748 77868893 -64402551 - MER117 DNA MER1_type -28 169 4 328 274 238 6 chr9 77869222 77869386 -64402058 + MIR SINE MIR 28 229 -33 392 220 202 0 chr9 77869577 77869721 -64401723 - MER5A DNA MER1_type -6 183 6 1760 185 36 11 chr9 77869734 77870090 -64401354 - MLT1A1 LTR MaLR 0 365 1 706 271 48 11 chr9 77870128 77870316 -64401128 + MIR SINE MIR 2 196 -66 646 170 27 0 chr9 77870341 77870453 -64400991 + FLAM_A SINE Alu 18 132 -10 2048 98 27 3 chr9 77870939 77871234 -64400210 - AluSq SINE Alu -11 302 1 1059 198 43 138 chr9 77871339 77871400 -64400044 - L1ME2 LINE L1 -5 6161 6096 1766 163 7 0 chr9 77871400 77871712 -64399732 + AluJb SINE Alu 5 318 0 1059 198 43 138 chr9 77871712 77872018 -64399426 - L1ME2 LINE L1 -70 6096 5828 246 229 115 42 chr9 77872214 77872310 -64399134 + MIR SINE MIR 30 132 -76 752 219 7 0 chr9 77872797 77872934 -64398510 - MER2 DNA MER2_type -207 138 1 23 0 0 0 chr9 77872946 77872969 -64398475 + AT_rich Low_complexity Low_complexity 1 23 0 1928 148 3 3 chr9 77873541 77873852 -64397592 + AluSx SINE Alu 1 311 -1 2299 84 0 0 chr9 77873983 77874279 -64397165 + AluSq SINE Alu 1 296 -17 2187 93 4 0 chr9 77874289 77874569 -64396875 + AluSc SINE Alu 1 281 -28 184 42 0 0 chr9 77874569 77874593 -64396851 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 386 276 65 43 chr9 77874617 77874849 -64396595 + L1P LINE L1 3596 3832 -2314 2020 144 0 3 chr9 77874915 77875214 -64396230 - AluSx SINE Alu -10 302 5 1979 113 42 7 chr9 77875295 77875578 -64395866 + AluSc SINE Alu 1 293 -16 2014 203 42 81 chr9 77875584 77876201 -64395243 + LTR9 LTR ERV1 20 612 0 1911 90 0 4 chr9 77876520 77876764 -64394680 - AluSx SINE Alu -24 288 46 244 311 12 24 chr9 77876916 77877080 -64394364 + T-rich Low_complexity Low_complexity 2 163 0 389 228 80 0 chr9 77877262 77877384 -64394060 + L1ME1 LINE L1 6035 6163 -1 2322 112 0 0 chr9 77877399 77877711 -64393733 + AluSx SINE Alu 1 312 0 390 210 193 0 chr9 77877796 77877915 -64393529 + MIR SINE MIR 120 261 -1 2101 133 7 3 chr9 77877938 77878246 -64393198 - AluSg SINE Alu -1 309 1 581 221 36 72 chr9 77878260 77878455 -64392989 + MIR SINE MIR 32 219 -43 360 0 0 0 chr9 77878559 77878599 -64392845 + (TG)n Simple_repeat Simple_repeat 2 41 0 864 143 0 8 chr9 77878715 77878848 -64392596 + FLAM_C SINE Alu 2 133 0 2465 148 18 10 chr9 77878887 77879287 -64392157 + L1PB3 LINE L1 5752 6154 0 267 272 53 34 chr9 77879817 77880063 -64391381 + L1ME4a LINE L1 5831 6117 -4 2204 154 74 0 chr9 77880440 77880803 -64390641 - MLT1B LTR MaLR 0 390 1 324 135 39 0 chr9 77880970 77881022 -64390422 + L1MC1 LINE L1 6267 6320 -13 2080 144 0 0 chr9 77881029 77881503 -64389941 - AluSx SINE Alu 0 474 1 1080 138 36 15 chr9 77881578 77881774 -64389670 + AluSg/x SINE Alu 99 298 -12 2249 90 13 7 chr9 77881789 77882090 -64389354 + AluSp SINE Alu 1 303 -10 490 299 83 39 chr9 77882097 77882301 -64389143 + MIR SINE MIR 49 261 -1 2259 108 20 0 chr9 77882772 77883078 -64388366 + AluSp SINE Alu 1 312 -1 205 264 0 38 chr9 77883740 77883793 -64387651 + L2 LINE L2 3218 3268 -4 202 311 14 14 chr9 77883954 77884028 -64387416 + CT-rich Low_complexity Low_complexity 2 75 0 333 243 212 79 chr9 77884475 77884895 -64386549 - MLT1J LTR MaLR -31 480 5 275 347 114 11 chr9 77884899 77884990 -64386454 - L2 LINE L2 -654 2660 2580 2504 62 3 0 chr9 77884990 77885299 -64386145 + AluY SINE Alu 1 310 -1 275 347 114 11 chr9 77885299 77885383 -64386061 - L2 LINE L2 -734 2580 2467 339 357 16 8 chr9 77885384 77885513 -64385931 - L2 LINE L2 0 3272 3143 354 373 28 20 chr9 77885542 77885794 -64385650 - L2 LINE L2 -895 2419 2166 997 145 21 0 chr9 77885823 77885968 -64385476 - FRAM SINE Alu -32 144 1 187 388 0 0 chr9 77886050 77886135 -64385309 - L2 LINE L2 -1240 2074 1990 425 325 73 39 chr9 77886233 77886614 -64384830 - L2 LINE L2 -1595 1719 1326 4551 127 6 2 chr9 77886677 77887309 -64384135 + MER41B LTR ERV1 1 635 0 204 390 10 0 chr9 77887327 77887427 -64384017 - L2 LINE L2 -2114 1200 1100 1940 139 0 4 chr9 77887453 77887733 -64383711 - AluSx SINE Alu -33 279 1 316 195 35 62 chr9 77888366 77888479 -64382965 + L1M4 LINE L1 2187 2296 -3850 3991 52 6 0 chr9 77888488 77888954 -64382490 - L1PA7 LINE L1 -6 6148 5680 846 307 78 48 chr9 77888954 77889416 -64382028 + L2 LINE L2 2348 2823 -491 2284 95 7 3 chr9 77889487 77889791 -64381653 - AluSx SINE Alu -7 305 1 288 197 49 0 chr9 77889919 77889980 -64381464 - MIR SINE MIR -79 183 120 693 167 0 9 chr9 77889983 77890091 -64381353 + FRAM SINE Alu 60 166 -10 2127 102 58 0 chr9 77890328 77890621 -64380823 - AluY SINE Alu -1 310 1 422 226 103 92 chr9 77890759 77891107 -64380337 + MLT1I LTR MaLR 92 409 0 2187 125 3 0 chr9 77891484 77891788 -64379656 + AluSp SINE Alu 1 305 -8 2064 111 7 4 chr9 77892200 77892522 -64378922 - AluSq SINE Alu 0 325 3 637 279 20 15 chr9 77892613 77892814 -64378630 + LTR33 LTR ERVL 19 220 -301 1787 174 3 3 chr9 77892830 77893123 -64378321 + AluJb SINE Alu 1 293 -19 180 97 0 0 chr9 77893674 77893705 -64377739 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 220 239 98 0 chr9 77894278 77894370 -64377074 + MIR SINE MIR 31 131 -77 2117 97 7 0 chr9 77895162 77895471 -64375973 + AluSp SINE Alu 3 313 0 213 121 0 0 chr9 77895471 77895504 -64375940 + (TA)n Simple_repeat Simple_repeat 2 34 0 1395 156 22 128 chr9 77895597 77895917 -64375527 + AluJo SINE Alu 2 287 -15 465 199 30 38 chr9 77895931 77896062 -64375382 + L1MC/D LINE L1 5305 5417 -749 2057 112 3 20 chr9 77896066 77896362 -64375082 - AluSx SINE Alu -21 291 1 713 231 65 32 chr9 77896686 77896872 -64374572 + MLT1D LTR MaLR 1 192 -313 1477 192 59 78 chr9 77896879 77897026 -64374418 - MER39 LTR ERV1 0 707 559 2605 64 0 0 chr9 77897026 77897337 -64374107 + AluY SINE Alu 1 311 0 1866 133 29 0 chr9 77897337 77897616 -64373828 + AluSp SINE Alu 27 313 0 1477 192 59 78 chr9 77897616 77897941 -64373503 - MER39 LTR ERV1 -146 561 243 236 233 291 0 chr9 77897914 77898000 -64373444 - MER34 LTR ERV1 -431 111 1 * 2253 112 0 10 chr9 77898029 77898332 -64373112 + AluSg SINE Alu 1 300 -10 1315 181 21 8 chr9 77898363 77898600 -64372844 + MLT1D LTR MaLR 258 497 -8 2092 135 0 10 chr9 77898655 77898967 -64372477 - AluSx SINE Alu -3 309 1 377 233 47 0 chr9 77899002 77899088 -64372356 + L1MC4 LINE L1 6614 6703 -1339 259 111 0 0 chr9 77899091 77899136 -64372308 - LTR66 LTR ERVL -172 438 394 2153 105 0 0 chr9 77899985 77900311 -64371133 - AluSc SINE Alu 0 328 3 188 347 61 10 chr9 77900996 77901094 -64370350 - MIR SINE MIR -73 135 33 198 0 0 0 chr9 77901105 77901127 -64370317 + (A)n Simple_repeat Simple_repeat 1 22 0 202 247 110 0 chr9 77901883 77901956 -64369488 - MIR SINE MIR -85 177 97 499 281 22 43 chr9 77901965 77902150 -64369294 + MIR SINE MIR 5 185 -77 351 0 0 0 chr9 77902572 77902611 -64368833 + (CA)n Simple_repeat Simple_repeat 2 40 0 2244 87 0 3 chr9 77902770 77903059 -64368385 + AluSc SINE Alu 5 292 -17 189 74 0 0 chr9 77903266 77903293 -64368151 + (GA)n Simple_repeat Simple_repeat 1 27 0 2237 100 0 3 chr9 77903366 77903666 -64367778 - AluSq SINE Alu -14 299 1 2375 87 3 0 chr9 77903790 77904102 -64367342 - AluSp SINE Alu 0 313 1 2479 64 0 6 chr9 77904359 77904670 -64366774 + AluY SINE Alu 3 311 0 213 292 108 31 chr9 77904785 77904915 -64366529 - MIR SINE MIR -89 173 34 * 344 268 44 16 chr9 77904858 77904979 -64366465 + MIR SINE MIR 5 122 -86 208 385 0 0 chr9 77905113 77905191 -64366253 - L2 LINE L2 -9 3263 3186 649 266 97 9 chr9 77905498 77905724 -64365720 + MIR SINE MIR 16 261 -1 2083 137 41 35 chr9 77905818 77905886 -64365558 + MER2 DNA MER2_type 2 68 -277 595 164 0 29 chr9 77905886 77905990 -64365454 + L1PB4 LINE L1 6053 6153 -3 2083 137 41 35 chr9 77905990 77906263 -64365181 + MER2 DNA MER2_type 68 345 0 1580 127 0 0 chr9 77906549 77906770 -64364674 - AluSg/x SINE Alu -4 306 86 1409 218 124 11 chr9 77907092 77907728 -64363716 - LTR50 LTR ERVL -8 787 1 1913 134 25 0 chr9 77907796 77908096 -64363348 + AluSx SINE Alu 1 307 0 2149 119 0 3 chr9 77908488 77908782 -64362662 + AluSx SINE Alu 1 293 -19 414 134 0 0 chr9 77908782 77908849 -64362595 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 1011 251 80 20 chr9 77909105 77909404 -64362040 - MLT1H LTR MaLR -232 317 1 1022 196 15 29 chr9 77909414 77909618 -64361826 - MLT2B3 LTR ERVL -353 201 1 806 226 22 11 chr9 77909627 77909808 -64361636 + MER5A DNA MER1_type 7 189 0 2160 119 3 0 chr9 77909957 77910296 -64361148 + AluSp SINE Alu 1 340 0 428 316 149 10 chr9 77910887 77911175 -64360269 + L2 LINE L2 2983 3310 -3 276 259 336 0 chr9 77911817 77911933 -64359511 + MER5A DNA MER1_type 34 188 -1 337 271 81 19 chr9 77912148 77912303 -64359141 - MIR SINE MIR -77 131 6 213 238 0 0 chr9 77912345 77912387 -64359057 + CT-rich Low_complexity Low_complexity 2 43 0 257 211 49 8 chr9 77912583 77912706 -64358738 + (TA)n Simple_repeat Simple_repeat 1 128 0 21 0 0 0 chr9 77912857 77912878 -64358566 + AT_rich Low_complexity Low_complexity 1 21 0 2112 99 28 0 chr9 77913222 77913504 -64357940 + AluSc SINE Alu 1 290 -19 300 23 23 0 chr9 77913774 77913818 -64357626 - Tigger2 DNA MER2_type -197 2521 2477 1595 171 7 18 chr9 77913845 77914120 -64357324 - AluJo SINE Alu -40 272 1 1909 159 0 0 chr9 77914188 77914494 -64356950 - AluSx SINE Alu 0 306 1 4149 155 20 28 chr9 77914515 77915219 -64356225 - Tigger2 DNA MER2_type -1961 757 58 2211 99 0 63 chr9 77915219 77915553 -64355891 + AluSq SINE Alu 1 313 0 4149 155 20 28 chr9 77915553 77915610 -64355834 - Tigger2 DNA MER2_type -2660 58 2 998 173 6 6 chr9 77915633 77915801 -64355643 + Tigger2 DNA MER2_type 2539 2706 -12 1040 232 44 20 chr9 77915802 77916099 -64355345 + L1M4 LINE L1 4415 4718 -1428 2322 95 3 0 chr9 77916147 77916441 -64355003 + AluSc SINE Alu 1 295 -14 2163 103 0 30 chr9 77916453 77916753 -64354691 + AluSg SINE Alu 1 291 -19 918 183 5 5 chr9 77916755 77916941 -64354503 + L1M4 LINE L1 4740 4925 -1221 2049 121 21 0 chr9 77917077 77917357 -64354087 - AluSx SINE Alu -16 296 11 1039 181 5 5 chr9 77917388 77917576 -64353868 + MLT1D LTR MaLR 318 505 0 2392 156 82 57 chr9 77917578 77917921 -64353523 + LTR48 LTR ERV1 1 363 -424 2076 138 0 0 chr9 77917921 77918218 -64353226 - AluJb SINE Alu -15 297 1 2392 156 82 57 chr9 77918218 77918414 -64353030 + LTR48 LTR ERV1 363 553 -234 1646 95 0 5 chr9 77918405 77918627 -64352817 - THE1B LTR MaLR -143 221 1 * 207 0 0 0 chr9 77918966 77918989 -64352455 + (TA)n Simple_repeat Simple_repeat 2 24 0 2164 117 3 22 chr9 77919094 77919411 -64352033 - AluSq SINE Alu -2 311 1 2641 164 33 44 chr9 77919899 77920022 -64351422 - L1M2 LINE L1 -553 5738 5615 2231 88 0 7 chr9 77920022 77920334 -64351110 - AluSx SINE Alu 0 314 5 2641 164 33 44 chr9 77920334 77920820 -64350624 - L1M2 LINE L1 -676 5615 5134 2008 120 24 51 chr9 77921131 77921303 -64350141 - L1PB1 LINE L1 -14 6137 5977 2228 112 10 0 chr9 77921303 77921606 -64349838 - AluSc SINE Alu -3 306 1 2008 120 24 51 chr9 77921606 77921766 -64349678 - L1PB1 LINE L1 -174 5977 5814 1405 176 22 11 chr9 77921768 77922046 -64349398 - L1M2 LINE L1 -1022 5124 4844 2348 88 7 0 chr9 77922106 77922412 -64349032 - AluY SINE Alu -2 309 2 211 215 138 0 chr9 77922413 77922478 -64348966 - MER5C DNA MER1_type -215 109 36 1036 256 22 30 chr9 77922755 77923024 -64348420 - LTR16C LTR ERVL -1 490 224 608 291 107 0 chr9 77923486 77923720 -64347724 - MIR SINE MIR -2 260 2 252 239 92 39 chr9 77924008 77924138 -64347306 - L1ME LINE L1 -275 5846 5710 180 0 0 0 chr9 77926659 77926679 -64344765 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 776 160 83 69 chr9 77927093 77927147 -64344297 - LTR48 LTR ERV1 -21 766 714 2197 102 0 7 chr9 77927147 77927455 -64343989 + AluSx SINE Alu 1 306 0 776 160 83 69 chr9 77927455 77927778 -64343666 - LTR48 LTR ERV1 -73 714 293 453 163 0 12 chr9 77927809 77927889 -64343555 - AluJ/FRAM SINE Alu -8 304 226 725 206 12 24 chr9 77927999 77928169 -64343275 + AluY SINE Alu 119 286 -25 17384 159 19 7 chr9 77928191 77931475 -64339969 - L1P4 LINE L1 -694 5474 2157 2009 154 0 0 chr9 77931475 77931774 -64339670 - AluSx SINE Alu -13 299 1 17384 159 19 7 chr9 77931774 77931847 -64339597 - L1P4 LINE L1 -4011 2157 2086 1519 157 144 16 chr9 77931848 77932161 -64339283 - MSTA LTR MaLR -75 353 1 23 33 0 0 chr9 77932256 77932286 -64339158 + AT_rich Low_complexity Low_complexity 1 30 0 458 191 9 35 chr9 77932306 77932421 -64339023 + AluJo SINE Alu 26 137 -175 267 117 0 50 chr9 77932439 77932499 -64338945 + AluS SINE Alu 1 57 -246 2206 154 71 100 chr9 77932630 77933274 -64338170 + LTR8A LTR ERV1 12 673 -54 285 184 0 0 chr9 77933520 77933569 -64337875 + LTR8A LTR ERV1 679 727 0 486 155 69 17 chr9 77933751 77933867 -64337577 - L1M4 LINE L1 -3558 2588 2467 225 139 0 0 chr9 77934054 77934097 -64337347 + (TG)n Simple_repeat Simple_repeat 2 44 0 346 300 77 0 chr9 77934334 77934464 -64336980 + L1MC4a LINE L1 5913 6052 -1756 2096 137 0 0 chr9 77934485 77934785 -64336659 - AluSx SINE Alu -1 311 12 402 248 0 23 chr9 77934807 77934940 -64336504 - L1MB2 LINE L1 -5 6166 6037 233 29 0 29 chr9 77935295 77935330 -64336114 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 2041 84 44 0 chr9 77935334 77935609 -64335835 - AluSp SINE Alu -26 287 1 2486 76 0 0 chr9 77936039 77936341 -64335103 - AluY SINE Alu -9 302 1 1418 84 6 0 chr9 77936518 77936697 -64334747 + AluSx SINE Alu 1 180 -132 614 204 267 0 chr9 77936789 77936961 -64334483 - MER20 DNA MER1_type 0 219 2 1003 203 59 28 chr9 77936987 77937297 -64334147 - MSTD LTR MaLR 0 396 44 2000 162 0 9 chr9 77937303 77937618 -64333826 - AluSx SINE Alu 0 312 1 2216 102 0 10 chr9 77938276 77938579 -64332865 - AluSq SINE Alu -13 300 1 419 318 52 23 chr9 77938659 77939005 -64332439 + L1ME LINE L1 5310 5665 -456 437 268 73 24 chr9 77939005 77939169 -64332275 - MIR SINE MIR -14 248 77 322 304 76 11 chr9 77939193 77939377 -64332067 + L1ME LINE L1 5647 5842 -279 2040 151 3 0 chr9 77939419 77939717 -64331727 - AluSx SINE Alu -13 299 1 207 0 0 0 chr9 77940232 77940255 -64331189 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2076 121 4 0 chr9 77940257 77940538 -64330906 - AluSx SINE Alu -30 282 1 339 132 184 26 chr9 77940559 77940635 -64330809 - L2 LINE L2 -32 3281 3194 934 256 48 63 chr9 77941962 77942174 -64329270 + LTR16A LTR ERVL 57 262 -188 5606 46 1 0 chr9 77942174 77942854 -64328590 - L1PA6 LINE L1 0 6154 5474 934 256 48 63 chr9 77942854 77943035 -64328409 + LTR16A LTR ERVL 262 444 -6 287 85 21 0 chr9 77943388 77943435 -64328009 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 2049 132 3 13 chr9 77943437 77943740 -64327704 - AluSx SINE Alu -10 302 3 1921 117 36 0 chr9 77943749 77944046 -64327398 - AluSx SINE Alu 0 307 1 2257 114 0 0 chr9 77944050 77944348 -64327096 - AluSg SINE Alu -12 298 1 2438 73 0 3 chr9 77944743 77945045 -64326399 - AluY SINE Alu -10 301 1 270 265 20 10 chr9 77945271 77945373 -64326071 + L1M4 LINE L1 3766 3868 -2278 197 165 58 10 chr9 77945373 77945476 -64325968 + (TA)n Simple_repeat Simple_repeat 1 108 0 341 138 0 0 chr9 77945478 77945536 -64325908 + MER21B LTR ERV1 13 70 -861 2632 180 40 91 chr9 77945645 77946554 -64324890 + MER21B LTR ERV1 70 811 -52 2430 213 10 46 chr9 77946612 77947055 -64324389 + L1M4 LINE L1 3883 4291 -1855 2151 161 43 19 chr9 77947055 77947477 -64323967 + MSTB1 LTR MaLR 1 432 0 2430 213 10 46 chr9 77947477 77947757 -64323687 + L1M4 LINE L1 4291 4580 -1566 525 152 19 9 chr9 77947760 77947865 -64323579 + MER39 LTR ERV1 1 106 -601 462 142 0 75 chr9 77947867 77947973 -64323471 + L1MD1 LINE L1 6068 6165 -77 560 230 47 61 chr9 77947994 77948207 -64323237 - MER21A LTR ERV1 -136 795 586 490 238 110 70 chr9 77948313 77948641 -64322803 - MLT1H1 LTR MaLR -214 341 1 613 285 38 20 chr9 77948847 77949116 -64322328 + MLT1F1 LTR MaLR 6 271 -284 2234 122 0 0 chr9 77949478 77949781 -64321663 - AluSx SINE Alu -9 303 1 4526 160 7 11 chr9 77950219 77950349 -64321095 + L1MA9 LINE L1 5148 5277 -1035 2140 103 4 0 chr9 77950349 77950672 -64320772 + AluSq SINE Alu 1 324 0 4526 160 7 11 chr9 77950672 77951483 -64319961 + L1MA9 LINE L1 5277 6081 -231 1907 104 0 4 chr9 77951641 77951890 -64319554 - AluSc SINE Alu -59 250 3 200 357 61 10 chr9 77952575 77952673 -64318771 - MIR SINE MIR -73 135 33 198 0 0 0 chr9 77952684 77952706 -64318738 + (A)n Simple_repeat Simple_repeat 1 22 0 210 247 110 0 chr9 77953462 77953535 -64317909 - MIR SINE MIR -85 177 97 508 281 22 43 chr9 77953544 77953729 -64317715 + MIR SINE MIR 5 185 -77 351 0 0 0 chr9 77954152 77954191 -64317253 + (CA)n Simple_repeat Simple_repeat 2 40 0 2235 87 0 3 chr9 77954350 77954639 -64316805 + AluSc SINE Alu 5 292 -17 189 74 0 0 chr9 77954846 77954873 -64316571 + (GA)n Simple_repeat Simple_repeat 1 27 0 2227 100 0 3 chr9 77954946 77955246 -64316198 - AluSq SINE Alu -14 299 1 2255 111 3 9 chr9 77955370 77955685 -64315759 - AluSq SINE Alu 0 313 1 837 139 118 0 chr9 77955785 77955929 -64315515 - FRAM SINE Alu -16 160 1 342 246 107 70 chr9 77957041 77957228 -64314216 + MIR3 SINE MIR 4 197 -11 22 70 0 0 chr9 77958583 77958626 -64312818 + AT_rich Low_complexity Low_complexity 1 43 0 1054 164 0 0 chr9 77962243 77962408 -64309036 + FRAM SINE Alu 1 165 -1 447 214 39 0 chr9 77962488 77962591 -64308853 + MIR SINE MIR 156 262 0 247 319 0 0 chr9 77962715 77962784 -64308660 - L2 LINE L2 -1 3271 3203 22 35 0 0 chr9 77962891 77962920 -64308524 + AT_rich Low_complexity Low_complexity 1 29 0 1880 236 60 40 chr9 77963018 77963599 -64307845 + MLT1E LTR MaLR 1 593 0 23 68 0 0 chr9 77963931 77963975 -64307469 + AT_rich Low_complexity Low_complexity 1 44 0 279 54 0 0 chr9 77964312 77964349 -64307095 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1442 144 0 0 chr9 77964362 77964564 -64306880 - AluSg/x SINE Alu -20 290 89 243 0 0 0 chr9 77965461 77965488 -64305956 + (CA)n Simple_repeat Simple_repeat 2 28 0 512 198 155 9 chr9 77967412 77967528 -64303916 - FLAM_A SINE Alu 0 133 1 21 57 0 0 chr9 77967578 77967613 -64303831 + AT_rich Low_complexity Low_complexity 1 35 0 6353 132 16 57 chr9 77967690 77968366 -64303078 - MSTA-int LTR MaLR -518 1133 431 1980 147 0 7 chr9 77968366 77968658 -64302786 - AluSq SINE Alu -23 290 1 6353 132 16 57 chr9 77968658 77968671 -64302773 - MSTA-int LTR MaLR -1220 431 419 2177 119 3 0 chr9 77968671 77968964 -64302480 - AluSp SINE Alu -19 294 1 6353 132 16 57 chr9 77968964 77969216 -64302228 - MSTA-int LTR MaLR -1232 419 246 1863 117 80 7 chr9 77969216 77969490 -64301954 - AluSx SINE Alu -17 295 2 6353 132 16 57 chr9 77969490 77969727 -64301717 - MSTA-int LTR MaLR -1405 246 1 2636 148 9 19 chr9 77969727 77970159 -64301285 - MSTA LTR MaLR 0 428 1 1085 173 38 41 chr9 77970159 77970425 -64301019 + MER58B DNA MER1_type 77 341 0 229 300 0 14 chr9 77971735 77971805 -64299639 - L2 LINE L2 -257 3056 2988 1992 137 58 28 chr9 77972077 77972441 -64299003 + THE1C LTR MaLR 1 375 0 361 302 45 58 chr9 77972808 77973067 -64298377 + L1MC4a LINE L1 5606 5862 -1946 1881 147 49 96 chr9 77973067 77973427 -64298017 - MSTC LTR MaLR 0 428 92 1901 152 10 3 chr9 77973427 77973724 -64297720 - AluJb SINE Alu -9 303 5 1881 147 49 96 chr9 77973724 77973812 -64297632 - MSTC LTR MaLR -336 92 1 361 302 45 58 chr9 77973812 77973860 -64297584 + L1MC4a LINE L1 5862 5909 -1899 1801 167 27 55 chr9 77973901 77974302 -64297142 + MLT1B LTR MaLR 1 390 0 1427 176 57 14 chr9 77974437 77974716 -64296728 - AluJb SINE Alu -17 295 5 1639 211 32 40 chr9 77974806 77975279 -64296165 - LTR55 LTR ERV -79 469 1 220 184 0 0 chr9 77975280 77975318 -64296126 + (CAT)n Simple_repeat Simple_repeat 1 38 0 2271 132 0 0 chr9 77975664 77975974 -64295470 - AluSx SINE Alu 0 312 3 2346 113 0 3 chr9 77976099 77976410 -64295034 - AluSg SINE Alu 0 310 1 1821 154 34 0 chr9 77976518 77976810 -64294634 - AluSx SINE Alu -10 302 1 1375 199 81 78 chr9 77976903 77977073 -64294371 - MSTB2 LTR MaLR 0 457 289 1539 153 128 0 chr9 77977073 77977369 -64294075 + AluSx SINE Alu 1 328 0 1375 199 81 78 chr9 77977369 77977549 -64293895 - MSTB2 LTR MaLR -168 289 93 2219 102 17 0 chr9 77977549 77977842 -64293602 - AluSg SINE Alu -12 298 1 1375 199 81 78 chr9 77977842 77977936 -64293508 - MSTB2 LTR MaLR -364 93 1 240 197 74 91 chr9 77978405 77978493 -64292951 - MIR3 SINE MIR -53 155 65 357 183 70 120 chr9 77978733 77978788 -64292656 + L1MC4 LINE L1 6569 6625 -1417 2302 90 0 10 chr9 77978788 77979087 -64292357 + AluSc SINE Alu 5 300 -9 357 183 70 120 chr9 77979087 77979099 -64292345 + L1MC4 LINE L1 6625 6636 -1406 2002 154 20 0 chr9 77979099 77979405 -64292039 + AluJb SINE Alu 1 312 0 357 183 70 120 chr9 77979405 77979478 -64291966 + L1MC4 LINE L1 6636 6703 -1339 23 0 0 0 chr9 77979803 77979826 -64291618 + AT_rich Low_complexity Low_complexity 1 23 0 2091 134 3 0 chr9 77980097 77980402 -64291042 + AluSx SINE Alu 1 306 -6 2228 107 0 3 chr9 77981578 77981877 -64289567 - AluSx SINE Alu -14 298 1 249 228 0 51 chr9 77983363 77983442 -64288002 + GA-rich Low_complexity Low_complexity 2 76 0 494 245 111 34 chr9 77983548 77983756 -64287688 + L1MC1 LINE L1 5414 5637 -484 1017 182 5 31 chr9 77983756 77983948 -64287496 + AluJo SINE Alu 1 187 -125 187 56 83 0 chr9 77983978 77984014 -64287430 + A-rich Low_complexity Low_complexity 2 40 0 258 246 179 22 chr9 77984044 77984223 -64287221 + L1MC1 LINE L1 5673 5879 -1929 1082 133 41 31 chr9 77984252 77984456 -64286988 + L1MC1 LINE L1 5880 5998 -173 1633 136 49 4 chr9 77984540 77984804 -64286640 + L1MC1 LINE L1 6057 6332 -1 582 253 109 31 chr9 77984808 77984826 -64286618 - MIR SINE MIR -2 260 245 1467 179 4 4 chr9 77984826 77985072 -64286372 - AluJb SINE Alu -66 246 1 582 253 109 31 chr9 77985072 77985282 -64286162 - MIR SINE MIR -17 245 14 2065 86 0 11 chr9 77985562 77985829 -64285615 - AluSc SINE Alu -13 296 33 2139 102 3 3 chr9 77985878 77986163 -64285281 + AluSx SINE Alu 1 285 -27 387 0 0 0 chr9 77986166 77986209 -64285235 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 408 276 0 55 chr9 77986309 77986436 -64285008 - MER5A DNA MER1_type -53 136 17 322 296 0 0 chr9 77986673 77986761 -64284683 + L1M4 LINE L1 4755 4842 -1304 354 330 160 39 chr9 77986973 77987044 -64284400 + L2 LINE L2 2054 2115 -1199 2364 95 3 0 chr9 77987044 77987349 -64284095 - AluSc SINE Alu -3 306 1 354 330 160 39 chr9 77987349 77987814 -64283630 + L2 LINE L2 2115 2655 -659 309 217 229 0 chr9 77988008 77988091 -64283353 - MIR SINE MIR -115 147 46 423 331 55 0 chr9 77988148 77988275 -64283169 + L2 LINE L2 3127 3260 -12 788 208 0 14 chr9 77988531 77988675 -64282769 + FLAM_C SINE Alu 2 143 0 1067 205 0 0 chr9 77988700 77988895 -64282549 + AluJb SINE Alu 118 312 0 273 322 13 60 chr9 77988916 77989065 -64282379 + L3 LINE CR1 1434 1575 -2 2310 117 0 0 chr9 77989091 77989400 -64282044 - AluSc SINE Alu 0 309 1 23 68 0 0 chr9 77990140 77990184 -64281260 + AT_rich Low_complexity Low_complexity 1 44 0 2218 124 0 0 chr9 77990896 77991202 -64280242 + AluSx SINE Alu 1 306 -6 476 269 114 13 chr9 77991257 77991406 -64280038 - L2 LINE L2 -288 3025 2862 282 306 99 0 chr9 77991425 77991546 -64279898 + Charlie8 DNA MER1_type 133 265 -2152 239 114 45 0 chr9 77991627 77991671 -64279773 + LTR66 LTR ERVL 394 439 -171 228 196 0 0 chr9 77991725 77991771 -64279673 - L1MC4 LINE L1 -1339 6703 6658 518 265 89 92 chr9 77991849 77992185 -64279259 + MLT1J LTR MaLR 71 405 -106 263 158 0 18 chr9 77992194 77992251 -64279193 + CT-rich Low_complexity Low_complexity 3 58 0 295 265 48 12 chr9 77992257 77992340 -64279104 + MLT1J LTR MaLR 424 509 -2 250 193 18 0 chr9 77992441 77992498 -64278946 - Alu SINE Alu 0 301 244 2421 80 0 3 chr9 77992608 77992910 -64278534 + AluY SINE Alu 1 301 -10 2252 114 0 0 chr9 77993307 77993605 -64277839 + AluSg SINE Alu 1 298 -12 2235 125 0 0 chr9 77993609 77993920 -64277524 + AluSx SINE Alu 1 311 -1 2431 88 3 0 chr9 77994370 77994675 -64276769 - AluSp SINE Alu -7 306 1 713 243 219 10 chr9 77996121 77996422 -64275022 - LTR50 LTR ERVL -89 706 343 219 244 39 64 chr9 77996482 77996560 -64274884 - L2 LINE L2 -248 3065 2990 4272 173 104 25 chr9 77996918 77997858 -64273586 - L1MD2 LINE L1 -19 6340 5327 711 239 104 46 chr9 77998024 77998407 -64273037 - L1ME4a LINE L1 -17 6104 5691 1967 100 7 21 chr9 77998407 77998698 -64272746 + AluSx SINE Alu 1 287 -25 1068 202 17 8 chr9 77998826 77999064 -64272380 + L1MB3 LINE L1 4966 5205 -941 2549 278 45 36 chr9 77999075 77999884 -64271560 + L1PA15 LINE L1 1 816 -5971 16273 207 38 22 chr9 77999884 78000337 -64271107 + L1PA15 LINE L1 1321 1765 -5051 2173 119 0 3 chr9 78000337 78000631 -64270813 - AluSx SINE Alu -19 293 1 16273 207 38 22 chr9 78000631 78002384 -64269060 + L1PA15 LINE L1 1765 3488 -3328 2020 146 0 16 chr9 78002384 78002699 -64268745 + AluJb SINE Alu 1 310 -2 16273 207 38 22 chr9 78002699 78005656 -64265788 + L1PA15 LINE L1 3488 6597 -219 2342 155 82 15 chr9 78005656 78006056 -64265388 - MSTA LTR MaLR 0 428 2 16273 207 38 22 chr9 78006056 78006280 -64265164 + L1PA15 LINE L1 6597 6816 0 4318 163 49 32 chr9 78006279 78006347 -64265097 + L1MB3 LINE L1 5188 5253 -930 * 276 77 0 0 chr9 78006347 78006386 -64265058 + (TG)n Simple_repeat Simple_repeat 2 40 0 4318 163 49 32 chr9 78006386 78007246 -64264198 + L1MB3 LINE L1 5253 6141 -42 1354 173 158 78 chr9 78007233 78007247 -64264197 + L1MCa LINE L1 1816 1827 -4599 * 2190 117 0 10 chr9 78007247 78007554 -64263890 + AluSc SINE Alu 1 304 -5 1354 173 158 78 chr9 78007554 78007845 -64263599 + L1MCa LINE L1 1827 2093 -4333 1819 160 34 3 chr9 78007845 78008138 -64263306 - AluSx SINE Alu -10 302 1 1354 173 158 78 chr9 78008138 78008368 -64263076 + L1MCa LINE L1 2093 2395 -4031 1839 202 112 45 chr9 78008384 78008543 -64262901 - MER21B LTR ERV1 -11 852 705 2434 72 0 0 chr9 78008543 78008835 -64262609 + AluSc SINE Alu 1 292 -17 1839 202 112 45 chr9 78008835 78009120 -64262324 - MER21B LTR ERV1 -158 705 378 251 245 19 0 chr9 78009122 78009175 -64262269 - MER2 DNA MER2_type -282 63 10 829 169 5 68 chr9 78009185 78009343 -64262101 + L1MB7 LINE L1 3784 3928 -2218 2205 125 0 0 chr9 78009343 78009646 -64261798 - AluSx SINE Alu -9 303 1 829 169 5 68 chr9 78009646 78009694 -64261750 + L1MB7 LINE L1 3928 3977 -2169 825 200 15 40 chr9 78009713 78009913 -64261531 + L1ME2 LINE L1 5960 6154 -10 297 153 17 34 chr9 78009948 78010007 -64261437 + L1MC4 LINE L1 7829 7886 -156 1709 202 9 3 chr9 78010090 78010412 -64261032 - L1ME LINE L1 -363 5803 5480 1097 216 41 60 chr9 78010408 78010774 -64260670 + L1ME1 LINE L1 5803 6161 -5 * 256 283 94 19 chr9 78011454 78011560 -64259884 + MER5A DNA MER1_type 54 167 -22 2188 129 0 0 chr9 78011589 78011898 -64259546 + AluSx SINE Alu 1 309 -3 1889 133 40 23 chr9 78012442 78012742 -64258702 - AluSg SINE Alu -5 305 1 878 194 6 12 chr9 78012917 78013077 -64258367 - FRAM SINE Alu -16 160 2 1885 191 119 41 chr9 78013110 78013674 -64257770 + L1MB7 LINE L1 4699 5306 -840 3263 157 20 30 chr9 78013674 78014285 -64257159 + L1MB7 LINE L1 5564 6168 -16 639 206 84 0 chr9 78014314 78014445 -64256999 + L1ME1 LINE L1 5629 5770 -396 1108 70 56 0 chr9 78014457 78014600 -64256844 + AluSq SINE Alu 4 154 -159 435 189 113 57 chr9 78014602 78014761 -64256683 + L1ME1 LINE L1 5998 6165 -1 21 36 0 0 chr9 78015134 78015162 -64256282 + AT_rich Low_complexity Low_complexity 1 28 0 602 149 53 0 chr9 78016822 78016936 -64254508 + L1MA6 LINE L1 6181 6300 0 675 252 59 40 chr9 78016940 78017361 -64254083 + L1 LINE L1 2755 3183 -2963 2278 100 0 3 chr9 78017372 78017673 -64253771 - AluSc SINE Alu -9 300 1 201 380 0 0 chr9 78017700 78017792 -64253652 + L2 LINE L2 2628 2719 -595 498 315 101 68 chr9 78017822 78018130 -64253314 + L2 LINE L2 2955 3272 0 2277 116 0 0 chr9 78018348 78018659 -64252785 + AluSx SINE Alu 1 311 -1 1628 107 44 0 chr9 78019161 78019409 -64252035 + AluSx SINE Alu 50 307 0 1976 119 4 0 chr9 78019430 78019699 -64251745 + AluSx SINE Alu 11 280 -32 666 25 0 0 chr9 78019703 78019783 -64251661 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 1048 256 48 63 chr9 78020126 78020307 -64251137 - LTR16A LTR ERVL -6 444 262 5983 46 1 0 chr9 78020307 78020987 -64250457 + L1PA6 LINE L1 5474 6154 0 1048 256 48 63 chr9 78020987 78021199 -64250245 - LTR16A LTR ERVL -188 262 57 340 132 184 26 chr9 78022526 78022602 -64248842 + L2 LINE L2 3194 3281 -32 2079 121 4 0 chr9 78022623 78022929 -64248515 + AluSx SINE Alu 1 307 0 1748 229 58 81 chr9 78023689 78023868 -64247576 - MLT2B3 LTR ERVL 0 554 372 2028 106 32 0 chr9 78023868 78024152 -64247292 + AluSq SINE Alu 1 293 -20 1748 229 58 81 chr9 78024152 78024539 -64246905 - MLT2B3 LTR ERVL -182 372 1 190 305 85 0 chr9 78024588 78024647 -64246797 + L2 LINE L2 3199 3262 -10 260 133 22 0 chr9 78024750 78024795 -64246649 - MER75 DNA T2_type 0 514 469 228 173 115 19 chr9 78024771 78024823 -64246621 - MER75 DNA T2_type -457 57 1 * 328 213 12 12 chr9 78024952 78025032 -64246412 + MER116 DNA Mariner 1 80 0 313 314 0 0 chr9 78025514 78025600 -64245844 + GA-rich Low_complexity Low_complexity 2 87 0 2350 116 0 0 chr9 78025958 78026268 -64245176 + AluSx SINE Alu 1 310 -2 390 262 96 47 chr9 78026718 78026943 -64244501 - L1ME4a LINE L1 -1 6120 5908 2019 151 3 0 chr9 78026943 78027241 -64244203 + AluSx SINE Alu 1 299 -13 390 262 96 47 chr9 78027241 78027467 -64243977 - L1ME4a LINE L1 -213 5908 5647 447 293 55 6 chr9 78027491 78027655 -64243789 + MIR SINE MIR 77 248 -14 540 318 52 23 chr9 78027655 78028001 -64243443 - L1ME4a LINE L1 -456 5665 5310 1275 117 6 0 chr9 78028081 78028260 -64243184 + AluSx SINE Alu 1 180 -132 695 198 267 0 chr9 78028352 78028524 -64242920 - MER20 DNA MER1_type 0 219 2 1132 190 59 28 chr9 78028550 78028860 -64242584 - MSTD LTR MaLR 0 396 44 1914 158 0 10 chr9 78028866 78029176 -64242268 - AluSx SINE Alu 0 312 6 1221 254 12 71 chr9 78029237 78029658 -64241786 + MSTD LTR MaLR 1 396 0 401 243 162 0 chr9 78030155 78030266 -64241178 - L2 LINE L2 0 3313 3185 235 246 0 31 chr9 78030267 78030332 -64241112 - MLT1H LTR MaLR 0 549 487 2148 49 45 0 chr9 78030365 78030630 -64240814 + AluY SINE Alu 34 310 -1 439 287 110 28 chr9 78030683 78030937 -64240507 - MLT1H LTR MaLR -237 312 38 23 33 0 0 chr9 78031847 78031877 -64239567 + AT_rich Low_complexity Low_complexity 1 30 0 2262 83 3 6 chr9 78032184 78032497 -64238947 - AluSx SINE Alu 0 312 1 4374 153 18 31 chr9 78032797 78033628 -64237816 - L1MA6 LINE L1 -129 6171 5352 1560 242 31 0 chr9 78033638 78034051 -64237393 - L1MCa LINE L1 -3386 3040 2615 5349 114 15 36 chr9 78034051 78034936 -64236508 - Tigger4(Zombi) DNA MER2_type -1 2730 1865 339 140 35 0 chr9 78034935 78034992 -64236452 - Tigger4(Zombi) DNA MER2_type -2641 90 32 * 937 163 16 151 chr9 78035014 78035150 -64236294 - L1MCa LINE L1 -3826 2600 2447 2152 113 3 0 chr9 78035150 78035443 -64236001 - AluSx SINE Alu -18 294 1 937 163 16 151 chr9 78035443 78035700 -64235744 - L1MCa LINE L1 -3979 2447 2284 555 180 54 9 chr9 78035700 78035811 -64235633 - FLAM_A SINE Alu -16 117 2 937 163 16 151 chr9 78035811 78035904 -64235540 - L1MCa LINE L1 -4142 2284 2180 477 243 7 14 chr9 78035911 78036051 -64235393 - L1MCa LINE L1 -5166 1260 1122 258 250 19 19 chr9 78036059 78036163 -64235281 - L1M4 LINE L1 -1777 4369 4266 2016 143 0 7 chr9 78036685 78036993 -64234451 + AluSx SINE Alu 1 306 -6 648 173 8 16 chr9 78037044 78037171 -64234273 - FRAM SINE Alu -20 156 31 1259 204 30 0 chr9 78037171 78037441 -64234003 - L1M4 LINE L1 -979 5167 4890 260 206 14 14 chr9 78039077 78039150 -64232294 + L1ME2 LINE L1 6084 6156 -8 256 290 121 24 chr9 78039372 78039496 -64231948 + L2 LINE L2 3173 3308 -5 1815 169 3 0 chr9 78039765 78040066 -64231378 - AluJb SINE Alu -8 304 3 832 158 0 0 chr9 78040388 78040521 -64230923 + FLAM_C SINE Alu 1 133 -10 4126 187 53 53 chr9 78041192 78042855 -64228589 + L1MB7 LINE L1 4359 6021 -163 1628 175 0 7 chr9 78042855 78043152 -64228292 + AluJb SINE Alu 14 308 -4 4126 187 53 53 chr9 78043152 78043173 -64228271 + L1MB7 LINE L1 6021 6041 -143 2226 113 11 11 chr9 78043173 78043528 -64227916 + THE1A LTR MaLR 1 355 0 4126 187 53 53 chr9 78043528 78043663 -64227781 + L1MB7 LINE L1 6041 6184 0 303 299 37 37 chr9 78043691 78043825 -64227619 + L1ME4a LINE L1 5988 6121 0 1468 169 22 60 chr9 78044387 78044701 -64226743 + AluJb SINE Alu 1 302 -10 400 303 17 67 chr9 78045104 78045282 -64226162 - MIR SINE MIR -76 186 18 42 82 0 0 chr9 78045434 78045532 -64225912 + AT_rich Low_complexity Low_complexity 1 98 0 22 35 0 0 chr9 78046080 78046109 -64225335 + AT_rich Low_complexity Low_complexity 1 29 0 1421 192 90 0 chr9 78046676 78046942 -64224502 + AluJb SINE Alu 1 290 -22 12388 134 56 8 chr9 78047011 78049047 -64222397 - Tigger1 DNA MER2_type 0 2418 284 2441 154 15 0 chr9 78049047 78049444 -64222000 - MER57A LTR ERV1 0 403 1 1775 116 19 0 chr9 78049444 78049703 -64221741 - Tigger1 DNA MER2_type -2131 287 24 27 62 0 0 chr9 78051778 78051826 -64219618 + AT_rich Low_complexity Low_complexity 1 48 0 737 242 195 17 chr9 78053100 78053398 -64218046 + L2 LINE L2 938 1288 -2026 329 250 33 11 chr9 78053406 78053498 -64217946 + MER58 DNA MER1_type 29 122 -2298 247 197 0 99 chr9 78053497 78053568 -64217876 + MER58 DNA MER1_type 2342 2405 -15 * 359 164 0 0 chr9 78053625 78053680 -64217764 - MER5A DNA MER1_type -1 188 134 4652 145 59 23 chr9 78053681 78053809 -64217635 + L1PB4 LINE L1 5203 5325 -831 2282 103 0 0 chr9 78053809 78054109 -64217335 + AluY SINE Alu 1 300 -11 4652 145 59 23 chr9 78054109 78054902 -64216542 + L1PB4 LINE L1 5325 6155 -1 504 227 168 0 chr9 78054911 78055030 -64216414 - MER5A DNA MER1_type -50 139 1 315 216 0 78 chr9 78055030 78055109 -64216335 + L2 LINE L2 1287 1356 -1958 3163 87 9 35 chr9 78055110 78055568 -64215876 + MLT2A2 LTR ERVL 1 446 -7 855 252 65 46 chr9 78055590 78055915 -64215529 + L2 LINE L2 1409 1739 -1575 2045 231 75 90 chr9 78055918 78056699 -64214745 + LTR41 LTR ERVL 1 770 -3 685 118 0 0 chr9 78057061 78057163 -64214281 - AluSg/x SINE Alu -9 301 200 1141 140 6 17 chr9 78057166 78057344 -64214100 + AluSx SINE Alu 11 186 -126 286 192 0 14 chr9 78057383 78057456 -64213988 - L1ME4a LINE L1 -5 6116 6045 1886 149 0 0 chr9 78057946 78058235 -64213209 - AluSx SINE Alu -23 289 1 1971 139 0 23 chr9 78058429 78058731 -64212713 + AluJo SINE Alu 5 299 -13 768 154 0 16 chr9 78059597 78059720 -64211724 + FLAM_C SINE Alu 5 125 -18 192 408 118 4 chr9 78059861 78060123 -64211321 - L2 LINE L2 -364 2950 2659 256 195 0 0 chr9 78060134 78060175 -64211269 - MER5A DNA MER1_type -1 188 148 391 169 62 0 chr9 78060175 78060240 -64211204 - MER1B DNA MER1_type 0 333 265 * 743 152 73 20 chr9 78060227 78060378 -64211066 - MER1B DNA MER1_type -82 215 57 376 230 0 0 chr9 78060386 78060460 -64210984 - MER5A DNA MER1_type -34 155 82 372 298 21 0 chr9 78060489 78060583 -64210861 + L2 LINE L2 1877 1972 -1342 315 180 0 0 chr9 78060649 78060699 -64210745 + MER57A LTR ERV1 295 344 -59 234 263 98 8 chr9 78060735 78060868 -64210576 + L1ME LINE L1 5762 5906 -258 25 51 0 0 chr9 78060896 78060935 -64210509 + AT_rich Low_complexity Low_complexity 1 39 0 1266 164 28 66 chr9 78061691 78061977 -64209467 + AluJo SINE Alu 7 281 -31 354 65 48 0 chr9 78062006 78062068 -64209376 + GA-rich Low_complexity Low_complexity 1 65 0 2053 140 0 0 chr9 78063383 78063676 -64207768 + AluSx SINE Alu 5 297 -15 205 344 121 0 chr9 78064121 78064278 -64207166 + L2 LINE L2 969 1144 -2170 260 274 71 35 chr9 78064467 78064580 -64206864 + HAL1 LINE L1 340 456 -2051 21 0 0 0 chr9 78064676 78064697 -64206747 + AT_rich Low_complexity Low_complexity 1 21 0 313 265 0 0 chr9 78064703 78064786 -64206658 + HAL1 LINE L1 2127 2209 -298 360 0 0 0 chr9 78064975 78065015 -64206429 + (TA)n Simple_repeat Simple_repeat 1 40 0 27 49 0 0 chr9 78065146 78065187 -64206257 + AT_rich Low_complexity Low_complexity 1 41 0 220 194 0 0 chr9 78065862 78065898 -64205546 + (TATG)n Simple_repeat Simple_repeat 2 37 0 2205 97 0 0 chr9 78066338 78066627 -64204817 + AluSg SINE Alu 1 289 -21 26 0 0 0 chr9 78066627 78066653 -64204791 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr9 78066683 78066726 -64204718 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr9 78066773 78066814 -64204630 + AT_rich Low_complexity Low_complexity 1 41 0 808 241 46 0 chr9 78067069 78067285 -64204159 - L1 LINE L1 -1905 4241 4016 2674 211 66 26 chr9 78067294 78068337 -64203107 - L1M3 LINE L1 -618 6373 5311 565 213 19 26 chr9 78068356 78068448 -64202996 - L1M3 LINE L1 -2533 4424 4332 2600 107 3 6 chr9 78068448 78068813 -64202631 - THE1B LTR MaLR 0 364 1 565 213 19 26 chr9 78068813 78068875 -64202569 - L1M3 LINE L1 -2625 4332 4271 2887 246 57 10 chr9 78069037 78070040 -64201404 - L1M3 LINE L1 -2689 4268 3219 21 36 0 0 chr9 78070088 78070116 -64201328 + AT_rich Low_complexity Low_complexity 1 28 0 926 182 0 7 chr9 78070116 78070270 -64201174 - FRAM SINE Alu -26 150 1 569 216 9 2 chr9 78070282 78070420 -64201024 - L1M3 LINE L1 -3802 3155 3017 417 191 90 0 chr9 78070420 78070509 -64200935 + Tigger5 DNA MER2_type 2227 2323 0 3758 227 32 8 chr9 78070509 78071756 -64199688 - L1M3 LINE L1 -3925 3034 1656 2134 164 8 6 chr9 78071756 78072121 -64199323 + MER47A DNA MER2_type 1 366 0 3758 227 32 8 chr9 78072121 78072246 -64199198 - L1M3 LINE L1 -5303 1656 1535 450 217 17 0 chr9 78072294 78072409 -64199035 - L1M3 LINE L1 -5450 1405 1289 633 233 53 15 chr9 78072447 78072663 -64198781 + MLT1C LTR MaLR 1 217 -173 895 240 90 45 chr9 78072705 78072826 -64198618 - L1M3 LINE L1 -6570 289 175 2126 104 24 0 chr9 78072826 78073114 -64198330 - AluSc SINE Alu -14 295 1 895 240 90 45 chr9 78073114 78073259 -64198185 - L1M3 LINE L1 -6684 175 11 2039 124 0 0 chr9 78073297 78073580 -64197864 - AluSx SINE Alu -18 294 12 23 0 0 0 chr9 78074396 78074419 -64197025 + AT_rich Low_complexity Low_complexity 1 23 0 452 337 80 4 chr9 78074544 78074793 -64196651 - L1MEd LINE L1 -2400 3729 3462 276 275 87 52 chr9 78074807 78075104 -64196340 - L1MEd LINE L1 -3348 2781 2474 753 93 9 0 chr9 78075122 78075230 -64196214 + AluSq/x SINE Alu 1 109 -204 37 0 0 0 chr9 78075310 78075347 -64196097 + AT_rich Low_complexity Low_complexity 1 37 0 428 310 149 28 chr9 78075349 78075828 -64195616 - L1MEd LINE L1 -3678 2451 1953 26 30 0 0 chr9 78075829 78075862 -64195582 + AT_rich Low_complexity Low_complexity 1 33 0 322 290 21 11 chr9 78075975 78076068 -64195376 - L1MEd LINE L1 -4579 1731 1638 1640 106 0 18 chr9 78076087 78076313 -64195131 - AluSq SINE Alu -91 222 1 1990 128 20 3 chr9 78076399 78076697 -64194747 - AluSx SINE Alu -6 306 4 788 270 57 97 chr9 78076721 78077661 -64193783 - L1MEd LINE L1 -4642 1487 587 26 0 0 0 chr9 78078924 78078950 -64192494 + AT_rich Low_complexity Low_complexity 1 26 0 1122 175 4 71 chr9 78079114 78079366 -64192078 - MER46A DNA MER2_type -1 235 1 442 298 0 43 chr9 78079568 78079709 -64191735 - L2 LINE L2 0 3313 3179 962 253 102 57 chr9 78079752 78079882 -64191562 - LTR41 LTR ERVL -5 768 645 1555 194 3 7 chr9 78079882 78080171 -64191273 + AluJb SINE Alu 1 288 -24 962 253 102 57 chr9 78080171 78080718 -64190726 - LTR41 LTR ERVL -128 645 1 1992 182 69 5 chr9 78081704 78082094 -64189350 - MSTB1 LTR MaLR -17 415 1 25 51 0 0 chr9 78082104 78082143 -64189301 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr9 78082393 78082413 -64189031 + (TG)n Simple_repeat Simple_repeat 1 20 0 336 48 0 0 chr9 78083562 78083604 -64187840 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 1867 146 7 0 chr9 78083604 78083885 -64187559 - AluSx SINE Alu -29 283 1 2414 65 0 10 chr9 78084136 78084444 -64187000 - AluY SINE Alu -6 305 1 914 153 74 44 chr9 78084519 78084658 -64186786 - MER3 DNA MER1_type 0 209 61 2065 143 0 0 chr9 78084658 78084958 -64186486 - AluSx SINE Alu -12 300 1 914 153 74 44 chr9 78084958 78085021 -64186423 - MER3 DNA MER1_type -148 61 1 24 0 0 0 chr9 78085203 78085227 -64186217 + AT_rich Low_complexity Low_complexity 1 24 0 247 305 38 61 chr9 78085312 78085443 -64186001 + MIR SINE MIR 77 204 -58 373 159 58 0 chr9 78085464 78085533 -64185911 + L1MC4a LINE L1 5820 5892 -1916 242 345 103 11 chr9 78085550 78085637 -64185807 - MIR SINE MIR -93 115 21 914 218 96 10 chr9 78086297 78086494 -64184950 + MER20 DNA MER1_type 6 219 0 411 301 70 70 chr9 78087330 78087659 -64183785 - L1ME4a LINE L1 -55 6066 5738 222 346 64 0 chr9 78087704 78087782 -64183662 + MIR SINE MIR 47 129 -133 8611 221 65 32 chr9 78088406 78089230 -64182214 - L1MB3 LINE L1 -10 6409 5613 2115 126 0 0 chr9 78089230 78089531 -64181913 - AluY SINE Alu -10 301 1 8611 221 65 32 chr9 78089531 78089860 -64181584 - L1MB3 LINE L1 -806 5613 5296 2563 45 7 3 chr9 78089860 78090169 -64181275 - AluY SINE Alu -1 310 1 8611 221 65 32 chr9 78090169 78093154 -64178290 - L1MB3 LINE L1 -1123 5296 2146 1277 172 5 5 chr9 78093154 78093375 -64178069 - AluJo SINE Alu -5 307 87 1408 192 50 0 chr9 78093412 78093516 -64177928 + AluJo SINE Alu 16 113 -199 180 77 0 0 chr9 78093516 78093542 -64177902 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1408 192 50 0 chr9 78093542 78093677 -64177767 + AluJo SINE Alu 113 267 -45 672 249 10 0 chr9 78093699 78093959 -64177485 - L1MB3 LINE L1 -4244 2140 1784 322 311 33 25 chr9 78095651 78095773 -64175671 + MIR SINE MIR 138 260 -2 2496 56 3 0 chr9 78096278 78096581 -64174863 - AluY SINE Alu -7 304 1 519 287 135 35 chr9 78096814 78096831 -64174613 - L1MC4a LINE L1 -1849 5959 5945 2177 95 3 14 chr9 78096831 78097125 -64174319 - AluSg1 SINE Alu -18 291 1 519 287 135 35 chr9 78097125 78097379 -64174065 - L1MC4a LINE L1 -1863 5945 5718 222 118 0 0 chr9 78097379 78097413 -64174031 + (TA)n Simple_repeat Simple_repeat 2 35 0 519 287 135 35 chr9 78097413 78097516 -64173928 - L1MC4a LINE L1 -2090 5718 5627 1917 163 3 0 chr9 78097516 78097810 -64173634 - AluSx SINE Alu -17 295 1 519 287 135 35 chr9 78097810 78098040 -64173404 - L1MC4a LINE L1 -2181 5627 5292 19779 88 5 21 chr9 78098361 78099034 -64172410 - L1PA7 LINE L1 -1 6468 5786 2447 67 0 3 chr9 78099034 78099333 -64172111 - AluY SINE Alu -13 298 1 19779 88 5 21 chr9 78099333 78102390 -64169054 - L1PA7 LINE L1 -683 5786 2797 12485 106 15 34 chr9 78102390 78104539 -64166905 - L1PA7 LINE L1 -4299 2162 1 2301 107 0 0 chr9 78104586 78104885 -64166559 + AluSx SINE Alu 3 301 -11 1864 216 119 31 chr9 78104930 78105672 -64165772 - L1MC4a LINE L1 -920 5226 4420 1479 161 141 48 chr9 78105680 78106034 -64165410 + MLT1B LTR MaLR 4 390 0 1006 185 58 16 chr9 78106036 78106388 -64165056 + MLT1B-int LTR MaLR 3 494 -877 1747 135 0 0 chr9 78106388 78106633 -64164811 + AluSx SINE Alu 54 298 -14 1169 231 47 58 chr9 78106640 78107104 -64164340 + L1ME3 LINE L1 4840 5298 -848 1693 234 35 22 chr9 78107119 78107576 -64163868 + L1ME3 LINE L1 5379 5841 -325 239 277 65 33 chr9 78107798 78107982 -64163462 + L1ME3 LINE L1 5973 6162 0 485 301 146 3 chr9 78108158 78108458 -64162986 + L1MC/D LINE L1 5494 5832 -368 21 0 0 0 chr9 78108739 78108760 -64162684 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 78109312 78109341 -64162103 + AT_rich Low_complexity Low_complexity 1 29 0 460 209 141 119 chr9 78109376 78109922 -64161522 - MER34B LTR ERV1 -3 562 5 21 36 0 0 chr9 78109974 78110002 -64161442 + AT_rich Low_complexity Low_complexity 1 28 0 2293 94 0 0 chr9 78110074 78110373 -64161071 + AluSc SINE Alu 1 299 -10 29 28 0 0 chr9 78110495 78110531 -64160913 + AT_rich Low_complexity Low_complexity 1 36 0 299 250 13 0 chr9 78110875 78110951 -64160493 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 22 0 0 0 chr9 78111870 78111892 -64159552 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr9 78112159 78112186 -64159258 + AT_rich Low_complexity Low_complexity 1 27 0 1283 183 49 132 chr9 78112414 78112961 -64158483 - MLT1D LTR MaLR -3 502 1 4143 151 29 1 chr9 78113186 78113883 -64157561 - L1MC1 LINE L1 0 6333 5618 2264 52 39 49 chr9 78113994 78114299 -64157145 - AluY SINE Alu -9 302 1 222 204 61 0 chr9 78114450 78114499 -64156945 + L2 LINE L2 3221 3272 0 3567 172 70 35 chr9 78114788 78115586 -64155858 - LTR1B LTR ERV1 0 826 1 24 0 0 0 chr9 78116060 78116084 -64155360 + AT_rich Low_complexity Low_complexity 1 24 0 2735 163 7 33 chr9 78116825 78117366 -64154078 + L1MA7 LINE L1 5762 6288 -3 220 205 0 0 chr9 78117549 78117588 -64153856 - MIR SINE MIR -1 261 223 258 156 0 0 chr9 78117646 78117691 -64153753 + (TA)n Simple_repeat Simple_repeat 2 46 0 196 281 47 47 chr9 78117953 78118017 -64153427 + L2 LINE L2 3199 3262 -10 1492 181 3 77 chr9 78118576 78118901 -64152543 + AluJo SINE Alu 1 301 -11 478 250 93 7 chr9 78119674 78119814 -64151630 + MIR SINE MIR 3 154 -108 1867 152 7 10 chr9 78120604 78120931 -64150513 - AluSx SINE Alu 0 312 1 472 217 85 0 chr9 78121525 78121654 -64149790 - L1MCc LINE L1 -2470 4471 4332 691 264 64 32 chr9 78121715 78122026 -64149418 - L1MC5 LINE L1 -395 7566 7246 455 115 51 0 chr9 78122102 78122180 -64149264 + MER73 LTR ERVL 11 92 -552 303 164 356 0 chr9 78122160 78122233 -64149211 + MER54A LTR ERVL 260 358 -543 * 253 104 0 42 chr9 78122238 78122286 -64149158 + MER73 LTR ERVL 215 260 -384 395 319 66 33 chr9 78122741 78122954 -64148490 - HAL1 LINE L1 -1875 632 413 291 227 45 0 chr9 78123015 78123147 -64148297 + (TA)n Simple_repeat Simple_repeat 1 138 0 237 33 0 0 chr9 78123151 78123181 -64148263 + (TC)n Simple_repeat Simple_repeat 1 30 0 1328 156 38 25 chr9 78123187 78123424 -64148020 - AluJb SINE Alu -72 240 1 494 322 176 10 chr9 78123429 78123730 -64147714 - L2 LINE L2 -64 3249 2899 861 257 61 4 chr9 78123812 78124092 -64147352 - L1ME1 LINE L1 -5 6161 5866 2852 258 118 55 chr9 78124105 78125030 -64146414 - L1MCc LINE L1 -2875 4066 3201 480 242 57 32 chr9 78125030 78125154 -64146290 - FLAM_A SINE Alu -6 127 1 2852 258 118 55 chr9 78125154 78125707 -64145737 - L1MCc LINE L1 -3740 3201 2684 2328 103 0 3 chr9 78125707 78126007 -64145437 - AluSx SINE Alu -12 300 2 2852 258 118 55 chr9 78126007 78126955 -64144489 - L1MCc LINE L1 -4257 2684 1797 2116 128 0 48 chr9 78126955 78127307 -64144137 + MER1B DNA MER1_type 1 335 -2 2852 258 118 55 chr9 78127307 78128467 -64142977 - L1MCc LINE L1 -5144 1797 16 29 0 0 0 chr9 78129440 78129469 -64141975 + AT_rich Low_complexity Low_complexity 1 29 0 1623 160 0 59 chr9 78129841 78130129 -64141315 - AluJo SINE Alu -23 289 19 926 209 34 38 chr9 78130655 78130894 -64140550 - AluJo SINE Alu -36 276 39 393 152 22 22 chr9 78132545 78132637 -64138807 - L1MA10 LINE L1 -2 6332 6241 1294 241 122 6 chr9 78132637 78133176 -64138268 - L1M4 LINE L1 -2543 3603 3002 1020 244 31 64 chr9 78133223 78133580 -64137864 - L1MEc LINE L1 -6017 379 35 257 343 0 0 chr9 78133590 78133657 -64137787 - L2 LINE L2 -16 3256 3190 224 143 20 20 chr9 78133656 78133705 -64137739 + MIR SINE MIR 131 179 -83 * 415 348 91 58 chr9 78133772 78134396 -64137048 - L2 LINE L2 -639 2675 2031 1519 150 11 38 chr9 78134608 78134875 -64136569 + THE1B LTR MaLR 1 260 -104 3042 82 2 0 chr9 78134875 78135289 -64136155 - L1P LINE L1 -1182 4964 4550 5467 72 11 4 chr9 78135289 78136021 -64135423 + L1PA8 LINE L1 5431 6167 -5 300 191 0 164 chr9 78136182 78136334 -64135110 - L1ME LINE L1 -394 5727 5601 1692 193 7 0 chr9 78136377 78136667 -64134777 + AluJb SINE Alu 2 293 -19 448 330 84 40 chr9 78136778 78137051 -64134393 - L2 LINE L2 -8 3305 3021 2229 117 0 0 chr9 78137884 78138184 -64133260 - AluSq SINE Alu -13 300 1 2277 104 0 3 chr9 78138295 78138594 -64132850 - AluSx SINE Alu -8 304 7 210 292 14 42 chr9 78139174 78139246 -64132198 - L2 LINE L2 -61 3211 3142 3357 196 18 78 chr9 78139349 78140379 -64131065 - LTR5 LTR ERVK 0 969 1 505 259 0 43 chr9 78140409 78140548 -64130896 - L2 LINE L2 -1016 2298 2166 2437 73 0 0 chr9 78140861 78141164 -64130280 - AluY SINE Alu -8 303 1 1839 199 21 48 chr9 78142298 78142328 -64129116 - MLT2D LTR ERVL -7 407 378 399 21 0 0 chr9 78142328 78142376 -64129068 + (TG)n Simple_repeat Simple_repeat 2 49 0 1839 199 21 48 chr9 78142376 78142763 -64128681 - MLT2D LTR ERVL -36 378 1 1897 131 24 3 chr9 78142833 78143131 -64128313 - AluSx SINE Alu -8 304 1 807 180 36 0 chr9 78143232 78143371 -64128073 + FRAM SINE Alu 1 140 -36 261 210 42 8 chr9 78144044 78144163 -64127281 + CT-rich Low_complexity Low_complexity 2 124 0 354 281 70 0 chr9 78145168 78145339 -64126105 + HAL1 LINE L1 1109 1291 -1216 1338 145 132 45 chr9 78145340 78145651 -64125793 - MER44D DNA MER2_type -1 608 1 470 294 62 45 chr9 78145898 78146187 -64125257 + HAL1 LINE L1 1510 1803 -704 550 215 64 99 chr9 78146781 78146856 -64124588 - L1MC5 LINE L1 -51 7910 7834 2343 75 3 0 chr9 78146856 78147150 -64124294 - AluY SINE Alu -16 295 1 550 215 64 99 chr9 78147150 78147386 -64124058 - L1MC5 LINE L1 -127 7834 7610 1769 242 125 6 chr9 78147423 78148113 -64123331 + L1ME2 LINE L1 2401 3172 -2974 2442 234 108 43 chr9 78148212 78148350 -64123094 + L1ME2 LINE L1 5254 5382 -782 2271 76 38 0 chr9 78148350 78148641 -64122803 - AluY SINE Alu -9 302 1 2442 234 108 43 chr9 78148641 78149349 -64122095 + L1ME2 LINE L1 5382 6156 -8 284 299 36 36 chr9 78149558 78149695 -64121749 - MIR SINE MIR -18 244 108 37 76 0 0 chr9 78152014 78152093 -64119351 + AT_rich Low_complexity Low_complexity 1 79 0 478 340 50 33 chr9 78153120 78153361 -64118083 - MLT1J LTR MaLR -242 269 25 24 53 0 0 chr9 78153470 78153508 -64117936 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr9 78154005 78154035 -64117409 + AT_rich Low_complexity Low_complexity 1 30 0 1802 153 10 16 chr9 78154838 78155146 -64116298 + AluJb SINE Alu 1 306 -6 207 167 0 0 chr9 78155601 78155643 -64115801 + (TA)n Simple_repeat Simple_repeat 1 42 0 762 153 28 21 chr9 78155643 78155787 -64115657 - L1MC1 LINE L1 -1 6332 6188 583 237 73 17 chr9 78156050 78156227 -64115217 - MIR SINE MIR -74 188 2 207 0 0 0 chr9 78157767 78157790 -64113654 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr9 78158553 78158579 -64112865 + AT_rich Low_complexity Low_complexity 1 26 0 512 267 158 47 chr9 78159504 78159845 -64111599 - L1ME2 LINE L1 -9 6155 5777 276 180 16 0 chr9 78159936 78159997 -64111447 - L1M4 LINE L1 -1470 4676 4615 1013 232 156 22 chr9 78160005 78160599 -64110845 - L1M4 LINE L1 -1760 4386 3693 732 203 52 0 chr9 78160610 78160763 -64110681 - AluJb SINE Alu -11 301 141 1348 173 102 42 chr9 78160816 78161274 -64110170 - MER1B DNA MER1_type 0 329 1 2541 259 130 31 chr9 78161282 78162706 -64108738 - L1MEc LINE L1 -4033 2363 799 669 270 100 80 chr9 78162739 78163191 -64108253 - L1MEc LINE L1 -5896 500 40 194 0 0 37 chr9 78163560 78163587 -64107857 + (TTA)n Simple_repeat Simple_repeat 1 26 0 8356 123 45 35 chr9 78163666 78164736 -64106708 - Tigger1 DNA MER2_type -644 1774 594 2029 137 29 40 chr9 78164736 78165115 -64106329 - THE1C LTR MaLR 0 375 1 8356 123 45 35 chr9 78165115 78165711 -64105733 - Tigger1 DNA MER2_type -1824 594 5 225 259 19 0 chr9 78165768 78165822 -64105622 - MIR SINE MIR -161 101 47 1613 163 18 18 chr9 78165958 78166241 -64105203 - AluJb SINE Alu -25 287 5 610 269 103 59 chr9 78166976 78167571 -64103873 - L1ME LINE L1 -297 5824 5201 22 35 0 0 chr9 78167580 78167609 -64103835 + AT_rich Low_complexity Low_complexity 1 29 0 38 89 0 0 chr9 78168479 78168580 -64102864 + AT_rich Low_complexity Low_complexity 1 101 0 1520 80 84 0 chr9 78169353 78169566 -64101878 - AluSp SINE Alu -8 305 75 28 48 0 0 chr9 78169724 78169766 -64101678 + AT_rich Low_complexity Low_complexity 1 42 0 214 245 20 0 chr9 78169774 78169823 -64101621 - L2 LINE L2 -1 3312 3263 6743 66 11 3 chr9 78171252 78172290 -64099154 + L1PA7 LINE L1 5110 6154 0 2338 51 34 3 chr9 78172729 78173023 -64098421 - AluY SINE Alu -8 303 1 1663 154 39 25 chr9 78173913 78174198 -64097246 - AluJo SINE Alu -23 289 1 534 344 23 23 chr9 78174288 78174506 -64096938 + MIR SINE MIR 7 224 -38 247 347 109 14 chr9 78175175 78175322 -64096122 - MIR SINE MIR -65 197 37 22 56 0 0 chr9 78175403 78175439 -64096005 + AT_rich Low_complexity Low_complexity 1 36 0 854 83 8 0 chr9 78177143 78177263 -64094181 + LTR17 LTR ERV1 206 326 -454 467 281 35 50 chr9 78177287 78177724 -64093720 - L1MEd LINE L1 -4882 1237 910 450 315 83 51 chr9 78177742 78178056 -64093388 - L2 LINE L2 0 3313 2990 714 145 43 0 chr9 78178059 78178174 -64093270 - MER76 LTR ERV 0 688 569 589 122 0 138 chr9 78178174 78178297 -64093147 + Tigger4(Zombi) DNA MER2_type 1 106 -2625 * 2779 114 9 7 chr9 78178291 78178721 -64092723 + Tigger4(Zombi) DNA MER2_type 2301 2731 0 1151 178 94 134 chr9 78178721 78179198 -64092246 - MER76 LTR ERV -118 570 113 2470 47 0 7 chr9 78180402 78180702 -64090742 + AluY SINE Alu 1 298 -13 377 281 105 9 chr9 78181161 78181391 -64090053 + L1MC4 LINE L1 7670 7945 -48 3070 126 11 21 chr9 78181900 78182693 -64088751 - L1P5 LINE L1 -450 5701 4909 1989 177 8 5 chr9 78182867 78183269 -64088175 - L1 LINE L1 -1249 4897 4495 1083 159 0 0 chr9 78183399 78183569 -64087875 - AluJb SINE Alu -8 304 135 4736 99 25 0 chr9 78183874 78184559 -64086885 + L1PA10 LINE L1 5467 6168 0 209 176 0 20 chr9 78185111 78185162 -64086282 + CT-rich Low_complexity Low_complexity 3 52 0 1413 115 5 9 chr9 78185221 78185438 -64086006 - L1PA15 LINE L1 0 6165 5950 2218 119 0 0 chr9 78185560 78185870 -64085574 - AluSx SINE Alu -2 310 1 565 308 129 39 chr9 78186280 78186745 -64084699 - HAL1b LINE L1 -632 716 210 753 84 101 8 chr9 78187428 78187547 -64083897 + AluSg SINE Alu 1 130 -180 1960 95 4 0 chr9 78187549 78187813 -64083631 + AluSg SINE Alu 35 299 -11 22 35 0 0 chr9 78189070 78189099 -64082345 + AT_rich Low_complexity Low_complexity 1 29 0 3546 279 113 43 chr9 78190597 78192492 -64078952 + L2 LINE L2 1299 3309 -4 2213 107 10 0 chr9 78192964 78193273 -64078171 + AluSx SINE Alu 1 312 0 2333 90 0 0 chr9 78193879 78194180 -64077264 - AluSx SINE Alu -9 303 3 235 203 51 34 chr9 78194963 78195022 -64076422 - MER5A DNA MER1_type -95 94 35 2063 108 7 0 chr9 78195473 78195759 -64075685 + AluSx SINE Alu 12 299 -13 405 277 36 26 chr9 78196129 78196324 -64075120 - L1ME3A LINE L1 -275 5895 5699 25 19 8 0 chr9 78196614 78196689 -64074755 + AT_rich Low_complexity Low_complexity 1 32 0 734 199 43 0 chr9 78197039 78197200 -64074244 - L1MB7 LINE L1 -9 6175 6008 1820 232 46 36 chr9 78197216 78199315 -64072129 - L1ME2 LINE L1 -213 6762 4661 1313 119 0 44 chr9 78199317 78199543 -64071901 - AluSg/x SINE Alu -1 311 96 2398 288 53 50 chr9 78199553 78200071 -64071373 - L1ME2 LINE L1 -5916 943 419 2285 94 3 3 chr9 78200071 78200378 -64071066 + AluSx SINE Alu 2 308 -4 2398 288 53 50 chr9 78200378 78200789 -64070655 - L1ME2 LINE L1 -6440 419 11 272 286 162 32 chr9 78201075 78201229 -64070215 + L3 LINE CR1 540 713 -864 23 33 0 0 chr9 78201639 78201669 -64069775 + AT_rich Low_complexity Low_complexity 1 30 0 1340 182 189 19 chr9 78202014 78202327 -64069117 - MER47A DNA MER2_type 0 366 1 27 49 0 0 chr9 78202361 78202402 -64069042 + AT_rich Low_complexity Low_complexity 1 41 0 25 51 0 0 chr9 78204299 78204338 -64067106 + AT_rich Low_complexity Low_complexity 1 39 0 285 314 99 16 chr9 78204521 78204642 -64066802 + MIR SINE MIR 20 150 -58 1967 128 17 0 chr9 78204778 78205075 -64066369 + AluSx SINE Alu 1 302 -10 2383 198 50 15 chr9 78205613 78206134 -64065310 - Tigger6 DNA MER2_type -9 1588 1050 1670 147 125 25 chr9 78207167 78207527 -64063917 - MSTD LTR MaLR 0 396 1 6475 18 8 0 chr9 78207583 78208346 -64063098 - L1PA2 LINE L1 0 6155 5387 * 12216 29 0 0 chr9 78208343 78209806 -64061638 + L1PA2 LINE L1 3922 5384 -762 2565 181 96 2 chr9 78210089 78210591 -64060853 - MER44D DNA MER2_type -1 604 1 367 316 34 11 chr9 78211397 78211660 -64059784 + L1M4 LINE L1 2336 2604 -3542 2729 268 85 20 chr9 78211706 78212874 -64058570 - L2 LINE L2 -6 3307 2052 6921 220 61 58 chr9 78212880 78213130 -64058314 - L1M4 LINE L1 -1496 4650 4402 2575 14 0 0 chr9 78213130 78213415 -64058029 - AluYb8 SINE Alu -3 315 31 6921 220 61 58 chr9 78213415 78214992 -64056452 - L1M4 LINE L1 -1744 4402 2831 2271 97 7 10 chr9 78214992 78215166 -64056278 - AluSx SINE Alu -4 308 134 2398 77 3 0 chr9 78215166 78215466 -64055978 - AluSp SINE Alu -12 301 1 2271 97 7 10 chr9 78215466 78215600 -64055844 - AluSx SINE Alu -178 134 1 6921 220 61 58 chr9 78215600 78216225 -64055219 - L1M4 LINE L1 -3315 2831 2187 2321 90 3 6 chr9 78216225 78216536 -64054908 - AluSg SINE Alu 0 310 1 6921 220 61 58 chr9 78216536 78216566 -64054878 - L1M4 LINE L1 -3959 2187 2159 2020 169 3 12 chr9 78216602 78216940 -64054504 - MER1B DNA MER1_type -1 336 2 622 209 198 6 chr9 78217065 78217247 -64054197 - AluJo SINE Alu -7 305 89 372 316 30 83 chr9 78217296 78217669 -64053775 + L1M4 LINE L1 3813 4165 -1981 25 31 0 0 chr9 78217863 78217895 -64053549 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr9 78218079 78218102 -64053342 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 78220134 78220157 -64051287 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr9 78220558 78220591 -64050853 + (ATG)n Simple_repeat Simple_repeat 3 35 0 22 94 0 0 chr9 78221039 78221103 -64050341 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr9 78222518 78222539 -64048905 + AT_rich Low_complexity Low_complexity 1 21 0 2459 55 10 7 chr9 78222622 78222930 -64048514 - AluY SINE Alu -2 309 1 1688 162 20 10 chr9 78225235 78225531 -64045913 - AluJo SINE Alu -13 299 1 22 70 0 0 chr9 78226425 78226468 -64044976 + AT_rich Low_complexity Low_complexity 1 43 0 257 0 0 29 chr9 78226590 78226624 -64044820 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1026 152 0 0 chr9 78226624 78226769 -64044675 - FRAM SINE Alu -31 145 1 264 296 23 76 chr9 78227803 78227935 -64043509 - L2 LINE L2 0 3313 3189 404 264 60 65 chr9 78228282 78228483 -64042961 + MIR SINE MIR 5 204 -58 7892 112 52 95 chr9 78228483 78229693 -64041751 - Tigger1 DNA MER2_type 0 2418 1158 2075 107 13 7 chr9 78229693 78229993 -64041451 - AluSx SINE Alu -9 303 2 1709 177 0 11 chr9 78229995 78230278 -64041166 - AluJb SINE Alu -17 295 16 7892 112 52 95 chr9 78230278 78230350 -64041094 - Tigger1 DNA MER2_type -1261 1157 1083 655 238 0 0 chr9 78230350 78230472 -64040972 + FLAM_A SINE Alu 2 123 -10 7892 112 52 95 chr9 78230472 78231584 -64039860 - Tigger1 DNA MER2_type -1335 1083 1 2194 99 0 7 chr9 78232921 78233215 -64038229 - AluSg SINE Alu -18 292 1 222 363 11 0 chr9 78234366 78234457 -64036987 + MIR3 SINE MIR 110 201 -7 3209 3 0 0 chr9 78234757 78235107 -64036337 + L1HS LINE L1 5806 6155 0 219 36 0 0 chr9 78235108 78235136 -64036308 + (A)n Simple_repeat Simple_repeat 1 28 0 634 247 168 3 chr9 78235780 78236084 -64035360 - L1ME4a LINE L1 -158 5963 5610 720 286 68 94 chr9 78236089 78236472 -64034972 - L1ME4a LINE L1 -745 5401 5010 2394 64 10 13 chr9 78236472 78236770 -64034674 + AluY SINE Alu 1 297 -14 720 286 68 94 chr9 78236770 78237256 -64034188 - L1ME4a LINE L1 -1136 5010 4576 405 0 0 0 chr9 78237256 78237301 -64034143 + (TG)n Simple_repeat Simple_repeat 2 46 0 720 286 68 94 chr9 78237301 78237529 -64033915 - L1ME4a LINE L1 -1570 4576 4344 1741 151 96 10 chr9 78237674 78237986 -64033458 + MER44D DNA MER2_type 1 609 0 237 286 167 36 chr9 78238103 78238355 -64033089 - L3b LINE CR1 -175 1408 1124 303 289 121 43 chr9 78240226 78240458 -64030986 - L1MC4a LINE L1 -1902 5906 5657 1148 250 81 6 chr9 78241348 78241746 -64029698 - L1MC4a LINE L1 -3068 3078 2657 2060 132 10 0 chr9 78242347 78242643 -64028801 - AluSx SINE Alu -13 299 1 256 313 25 12 chr9 78242998 78243078 -64028366 + (CATG)n Simple_repeat Simple_repeat 2 82 0 21 36 0 0 chr9 78243535 78243563 -64027881 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 78243787 78243811 -64027633 + AT_rich Low_complexity Low_complexity 1 24 0 44286 41 6 4 chr9 78244232 78247308 -64024136 + L1PA4 LINE L1 1 3068 -3104 2514 56 7 0 chr9 78247308 78247612 -64023832 + AluY SINE Alu 1 306 -5 44286 41 6 4 chr9 78247612 78250696 -64020748 + L1PA4 LINE L1 3068 6172 0 249 57 0 0 chr9 78252054 78252089 -64019355 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 22 56 0 0 chr9 78252515 78252551 -64018893 + AT_rich Low_complexity Low_complexity 1 36 0 707 227 69 45 chr9 78255118 78255365 -64016079 - MER112 DNA MER1_type -3 253 1 26 74 0 0 chr9 78256478 78256532 -64014912 + AT_rich Low_complexity Low_complexity 1 54 0 1632 97 0 42 chr9 78257673 78257911 -64013533 - AluSc SINE Alu -8 301 74 341 205 24 12 chr9 78258424 78258507 -64012937 - L1M4 LINE L1 -1446 4700 4617 198 103 0 0 chr9 78259187 78259216 -64012228 + (CA)n Simple_repeat Simple_repeat 2 30 0 2361 93 0 0 chr9 78260159 78260449 -64010995 - AluSx SINE Alu -22 290 1 245 302 54 103 chr9 78260992 78261323 -64010121 - L2 LINE L2 -39 3233 2919 2328 93 0 0 chr9 78262230 78262530 -64008914 - AluY SINE Alu -11 300 1 425 251 69 80 chr9 78263881 78263993 -64007451 + MER5B DNA MER1_type 2 113 -65 2696 45 0 3 chr9 78263993 78264305 -64007139 - AluY SINE Alu 0 311 1 425 251 69 80 chr9 78264305 78264367 -64007077 + MER5B DNA MER1_type 113 174 -4 699 226 18 6 chr9 78264381 78264549 -64006895 + MER5B DNA MER1_type 5 174 -4 478 217 147 16 chr9 78264563 78264723 -64006721 - MER5A DNA MER1_type -2 187 4 287 214 14 14 chr9 78265042 78265112 -64006332 + Charlie1 DNA MER1_type 2683 2752 -9 233 299 55 60 chr9 78265536 78265747 -64005697 - Charlie8 DNA MER1_type 0 2417 123 405 39 0 0 chr9 78266951 78267002 -64004442 + (TG)n Simple_repeat Simple_repeat 2 52 0 278 325 66 26 chr9 78268316 78268467 -64002977 + L2 LINE L2 3132 3288 -25 25 0 0 0 chr9 78269290 78269315 -64002129 + AT_rich Low_complexity Low_complexity 1 25 0 1488 163 93 0 chr9 78269317 78269575 -64001869 - AluJo SINE Alu -16 296 15 429 221 21 11 chr9 78270848 78270943 -64000501 + MER97c DNA MER1_type? 2 97 -993 198 0 0 0 chr9 78270977 78270999 -64000445 + (A)n Simple_repeat Simple_repeat 1 22 0 2303 92 0 0 chr9 78271003 78271295 -64000149 + AluSg SINE Alu 1 292 -18 338 205 26 0 chr9 78271299 78271377 -64000067 - L1MC2 LINE L1 -3 6341 6262 305 250 30 0 chr9 78271468 78271568 -63999876 + (TTA)n Simple_repeat Simple_repeat 1 103 0 209 193 211 0 chr9 78271578 78271635 -63999809 - MIR SINE MIR -12 250 182 252 270 159 24 chr9 78272154 78272280 -63999164 + MIR3 SINE MIR 3 145 -63 272 339 41 41 chr9 78272613 78272734 -63998710 + L2 LINE L2 3123 3243 -29 1803 156 17 3 chr9 78273189 78273490 -63997954 + AluSx SINE Alu 1 305 -7 212 244 0 0 chr9 78273490 78273531 -63997913 + polypurine Low_complexity Low_complexity 1 41 0 297 167 0 0 chr9 78273533 78273587 -63997857 + GA-rich Low_complexity Low_complexity 2 55 0 370 271 34 108 chr9 78273587 78273856 -63997588 + MLT1I LTR MaLR 161 409 0 2111 125 0 3 chr9 78274197 78274494 -63996950 - AluSx SINE Alu -16 296 1 1340 200 44 134 chr9 78274503 78275009 -63996435 - L1MD3 LINE L1 0 8041 7596 1888 151 7 0 chr9 78275283 78275568 -63995876 + AluJb SINE Alu 1 287 -25 226 231 75 56 chr9 78275764 78275924 -63995520 - L2 LINE L2 -907 2407 2245 23 65 0 16 chr9 78276441 78276476 -63994968 + AT_rich Low_complexity Low_complexity 1 36 -25 1431 115 37 25 chr9 78276476 78276634 -63994810 - L1MA8 LINE L1 -6 6285 6121 2323 104 3 0 chr9 78276634 78276942 -63994502 - AluSx SINE Alu -3 309 1 1431 115 37 25 chr9 78276942 78277026 -63994418 - L1MA8 LINE L1 -170 6121 6040 23 65 0 16 chr9 78277026 78277052 -63994392 + AT_rich Low_complexity Low_complexity 36 61 0 2528 109 19 21 chr9 78277062 78277438 -63994006 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr9 78277517 78277538 -63993906 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 78277634 78277655 -63993789 + AT_rich Low_complexity Low_complexity 1 21 0 258 265 10 49 chr9 78277891 78277993 -63993451 + L1MEd LINE L1 2 99 -6020 1940 152 3 3 chr9 78278016 78278313 -63993131 + AluSx SINE Alu 1 297 -15 882 287 66 18 chr9 78278762 78279204 -63992240 + L1MEd LINE L1 2242 2704 -3425 1507 173 0 29 chr9 78279643 78279921 -63991523 + AluJo SINE Alu 26 295 -17 726 282 69 72 chr9 78280028 78280596 -63990848 + MLT2F LTR ERVL 5 570 -93 1383 165 13 98 chr9 78281357 78281673 -63989771 + AluJo SINE Alu 1 289 -23 757 279 77 45 chr9 78282350 78282726 -63988718 + MLT1J2 LTR MaLR 33 420 -30 2092 94 72 0 chr9 78282893 78283170 -63988274 - AluSx SINE Alu -15 297 1 1275 281 27 8 chr9 78283472 78283880 -63987564 - MLT1J2 LTR MaLR -34 416 2 784 257 44 10 chr9 78283966 78284172 -63987272 + MER58A DNA MER1_type 9 221 -3 2036 153 31 17 chr9 78284177 78284537 -63986907 + MER47A DNA MER2_type 1 365 -1 1846 169 14 53 chr9 78284903 78285264 -63986180 + MER7A DNA MER2_type 2 346 0 853 247 132 49 chr9 78286372 78286641 -63984803 - MER82 DNA MER2_type -2 651 355 2694 99 3 0 chr9 78286641 78287003 -63984441 + THE1B LTR MaLR 1 363 -1 853 247 132 49 chr9 78287003 78287020 -63984424 - MER82 DNA MER2_type -298 355 341 223 295 76 29 chr9 78287077 78287182 -63984262 + MIR SINE MIR 40 149 -59 682 109 17 0 chr9 78288476 78288595 -63982849 + (TG)n Simple_repeat Simple_repeat 1 121 0 260 196 144 72 chr9 78288610 78288622 -63982822 + L2 LINE L2 3210 3220 -93 1658 203 24 51 chr9 78288622 78288776 -63982668 + MLT1A1 LTR MaLR 1 158 -207 1596 161 13 38 chr9 78288776 78289093 -63982351 + AluJo SINE Alu 1 309 -3 1658 203 24 51 chr9 78289093 78289313 -63982131 + MLT1A1 LTR MaLR 158 365 0 260 196 144 72 chr9 78289313 78289397 -63982047 + L2 LINE L2 3220 3313 0 180 0 0 0 chr9 78290504 78290524 -63980920 + (T)n Simple_repeat Simple_repeat 1 20 0 316 231 50 25 chr9 78290562 78290683 -63980761 + LTR67 LTR ERVL 428 551 -6 2208 163 161 62 chr9 78290872 78291467 -63979977 - MLT1E1 LTR MaLR 0 654 1 21 36 0 0 chr9 78291948 78291976 -63979468 + AT_rich Low_complexity Low_complexity 1 28 0 282 320 121 39 chr9 78291990 78292196 -63979248 - MIR SINE MIR -38 224 2 37 76 0 0 chr9 78292684 78292763 -63978681 + AT_rich Low_complexity Low_complexity 1 79 0 237 196 0 0 chr9 78293119 78293175 -63978269 + GA-rich Low_complexity Low_complexity 1 56 0 499 149 43 11 chr9 78294457 78294551 -63976893 - MER53 DNA DNA -1 188 92 483 202 39 0 chr9 78294463 78294567 -63976877 + MER53 DNA DNA 17 124 -65 * 435 104 19 0 chr9 78294933 78295010 -63976434 + L1MB4 LINE L1 6043 6135 -45 1210 133 0 0 chr9 78295010 78295183 -63976261 + AluSg/x SINE Alu 131 303 -9 315 113 0 0 chr9 78295184 78295237 -63976207 + L1MB3 LINE L1 6127 6179 -4 1617 219 75 23 chr9 78296011 78296450 -63974994 + MLT1C LTR MaLR 6 467 0 270 191 29 86 chr9 78297134 78297239 -63974205 + MER5A DNA MER1_type 11 109 -80 300 314 83 0 chr9 78297324 78297445 -63973999 - MIR SINE MIR -76 186 56 2128 96 3 11 chr9 78298365 78298647 -63972797 + AluSg SINE Alu 1 280 -30 1863 175 0 0 chr9 78299919 78300227 -63971217 - AluJo SINE Alu -4 308 1 606 99 0 0 chr9 78300228 78300319 -63971125 + (TG)n Simple_repeat Simple_repeat 2 92 0 719 192 0 30 chr9 78300463 78300630 -63970814 - L1MB8 LINE L1 -1 6177 6016 1674 197 60 67 chr9 78300635 78301086 -63970358 + MLT1C LTR MaLR 4 451 -16 1965 186 78 32 chr9 78301090 78301564 -63969880 - L1MB8 LINE L1 -168 6010 5515 1220 185 0 5 chr9 78301612 78301823 -63969621 - AluJo SINE Alu -92 220 11 2130 244 76 39 chr9 78301859 78302538 -63968906 - L1M4c LINE L1 -4815 2144 1422 212 0 36 0 chr9 78302538 78302566 -63968878 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2130 244 76 39 chr9 78302566 78302808 -63968636 - L1M4c LINE L1 -5537 1422 1190 342 0 0 0 chr9 78302927 78302965 -63968479 + (TG)n Simple_repeat Simple_repeat 2 39 0 2436 230 83 105 chr9 78303382 78304337 -63967107 - L1M4c LINE L1 -5925 934 1 926 287 43 40 chr9 78304451 78304848 -63966596 + MLT1I LTR MaLR 5 402 -7 213 39 0 0 chr9 78305292 78305318 -63966126 + (A)n Simple_repeat Simple_repeat 1 26 0 2146 125 131 13 chr9 78306588 78306963 -63964481 - MSTA LTR MaLR -9 419 1 855 257 9 0 chr9 78308330 78308552 -63962892 + L1MB7 LINE L1 4119 4342 -1804 1590 202 31 17 chr9 78308558 78308715 -63962729 + MLT1A2 LTR MaLR 18 171 -203 270 0 0 0 chr9 78308715 78308745 -63962699 + (TC)n Simple_repeat Simple_repeat 1 30 0 1590 202 31 17 chr9 78308745 78308939 -63962505 + MLT1A2 LTR MaLR 171 374 0 4702 187 20 34 chr9 78308939 78309105 -63962339 + L1MB7 LINE L1 4339 4506 -1678 1751 192 3 0 chr9 78309105 78309407 -63962037 + AluJb SINE Alu 5 307 -5 4702 187 20 34 chr9 78309407 78310992 -63960452 + L1MB7 LINE L1 4506 6060 -124 273 303 108 43 chr9 78311714 78311899 -63959545 - MER115 DNA AcHobo -423 270 74 233 275 0 0 chr9 78311948 78312028 -63959416 + L1MC/D LINE L1 5358 5437 -2605 794 272 176 64 chr9 78312534 78313001 -63958443 + HAL1 LINE L1 45 458 -2049 1727 182 33 0 chr9 78313001 78313303 -63958141 + AluSx SINE Alu 1 312 0 794 272 176 64 chr9 78313303 78313952 -63957492 + HAL1 LINE L1 458 1286 -1221 40201 37 3 9 chr9 78313957 78319627 -63951817 - L1PA4 LINE L1 0 6155 521 362 264 47 0 chr9 78319626 78319732 -63951712 + HAL1 LINE L1 1281 1391 -1116 * 812 279 72 20 chr9 78319738 78320266 -63951178 + HAL1 LINE L1 1420 2015 -492 340 236 107 51 chr9 78320277 78320455 -63950989 + HAL1 LINE L1 2054 2241 -266 564 175 10 48 chr9 78320551 78320639 -63950805 - Tigger7 DNA MER2_type 0 2491 2406 15208 126 27 9 chr9 78320639 78323013 -63948431 - Tigger1 DNA MER2_type -2 2416 1 564 175 10 48 chr9 78323013 78323027 -63948417 - Tigger7 DNA MER2_type -85 2406 2393 1408 196 52 0 chr9 78323027 78323277 -63948167 - Tigger7 DNA MER2_type -287 263 1 196 382 89 0 chr9 78323338 78323461 -63947983 + MIR SINE MIR 79 212 -50 6748 175 35 14 chr9 78323992 78325428 -63946016 + L1 LINE L1 14 1483 -4074 4069 150 61 61 chr9 78325428 78326250 -63945194 - LTR12 LTR ERV1 0 826 5 6748 175 35 14 chr9 78326250 78326261 -63945183 + L1 LINE L1 1483 1492 -4065 3012 166 15 23 chr9 78326264 78326873 -63944571 - pTR5 LTR ERV1 -1092 1346 743 5986 220 29 19 chr9 78326874 78328559 -63942885 + L1 LINE L1 1890 3639 -2689 2425 91 3 0 chr9 78328646 78328953 -63942491 + AluSx SINE Alu 1 308 -4 180 0 0 0 chr9 78328953 78328973 -63942471 + (TA)n Simple_repeat Simple_repeat 2 21 0 2045 118 17 7 chr9 78329849 78330146 -63941298 - AluSx SINE Alu -12 300 1 501 227 57 7 chr9 78330384 78330525 -63940919 - MER103 DNA DNA -12 154 7 2158 130 0 0 chr9 78330698 78331026 -63940418 - AluSx SINE Alu 0 328 1 484 190 110 76 chr9 78331303 78331513 -63939931 + MLT1J2 LTR MaLR 249 445 -5 201 233 0 0 chr9 78332601 78332644 -63938800 - L2 LINE L2 -213 3059 3017 220 266 62 16 chr9 78333538 78333602 -63937842 + L2 LINE L2 3246 3312 -1 390 121 0 0 chr9 78333633 78333699 -63937745 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 404 294 84 0 chr9 78333876 78333995 -63937449 + MIR SINE MIR 11 139 -123 2320 113 3 0 chr9 78334019 78334330 -63937114 + AluSp SINE Alu 2 313 0 307 322 8 16 chr9 78334330 78334451 -63936993 + L2 LINE L2 3194 3313 0 257 301 12 24 chr9 78334463 78334546 -63936898 + MIR SINE MIR 159 240 -22 2156 92 11 0 chr9 78335495 78335803 -63935641 + AluSx SINE Alu 1 311 0 2191 117 17 0 chr9 78335944 78336244 -63935200 - AluSq SINE Alu -8 305 1 4734 163 74 20 chr9 78336296 78336887 -63934557 - L1MD1 LINE L1 0 6242 5572 2339 102 3 0 chr9 78336887 78337181 -63934263 - AluSx SINE Alu -17 295 1 4734 163 74 20 chr9 78337181 78337600 -63933844 - L1MD1 LINE L1 -670 5572 5177 2515 207 157 17 chr9 78337609 78337636 -63933808 - L1MDa LINE L1 -5084 1441 1419 2263 98 10 0 chr9 78337636 78337933 -63933511 - AluY SINE Alu -11 300 1 2515 207 157 17 chr9 78337933 78339141 -63932303 - L1MDa LINE L1 -5106 1419 1 1757 101 37 122 chr9 78339580 78339907 -63931537 - AluSq SINE Alu -14 299 1 207 0 0 0 chr9 78340475 78340498 -63930946 + (GA)n Simple_repeat Simple_repeat 2 24 0 2406 85 0 10 chr9 78340587 78340894 -63930550 - AluSc SINE Alu -5 304 1 24 0 0 0 chr9 78341119 78341143 -63930301 + AT_rich Low_complexity Low_complexity 1 24 0 189 284 68 68 chr9 78341373 78341521 -63929923 + L2 LINE L2 3124 3271 -1 1510 137 64 45 chr9 78341827 78341904 -63929540 - MER33 DNA MER1_type -2261 324 250 1742 147 0 73 chr9 78341904 78342231 -63929213 + AluJo SINE Alu 1 303 -9 1510 137 64 45 chr9 78342231 78342323 -63929121 - MER33 DNA MER1_type -2335 250 161 2392 79 0 0 chr9 78342323 78342614 -63928830 + AluSc SINE Alu 1 291 -18 1510 137 64 45 chr9 78342614 78342757 -63928687 - MER33 DNA MER1_type -2424 161 5 1803 111 26 81 chr9 78343637 78343944 -63927500 - AluSx SINE Alu -22 290 1 1279 283 88 52 chr9 78344243 78344860 -63926584 + L1MC4 LINE L1 6445 7038 -1004 3351 143 58 9 chr9 78344860 78345425 -63926019 - L1MB3 LINE L1 -1 6182 5590 1279 283 88 52 chr9 78345425 78345658 -63925786 + L1MC4 LINE L1 7038 7338 -704 633 89 0 0 chr9 78345658 78345737 -63925707 - MADE1 DNA Mariner -1 79 1 1279 283 88 52 chr9 78345737 78345871 -63925573 + L1MC4 LINE L1 7338 7466 -576 1899 175 50 23 chr9 78345873 78346272 -63925172 - L1MB8 LINE L1 0 6178 5769 1298 96 17 6 chr9 78346277 78346454 -63924990 - AluSg/x SINE Alu -25 287 109 27 29 0 0 chr9 78346981 78347015 -63924429 + AT_rich Low_complexity Low_complexity 1 34 0 182 255 20 59 chr9 78347312 78347363 -63924081 + MER5A DNA MER1_type 77 125 -64 23 0 0 0 chr9 78348269 78348292 -63923152 + AT_rich Low_complexity Low_complexity 1 23 0 489 342 22 14 chr9 78349189 78349411 -63922033 + MIR SINE MIR 5 228 -34 230 130 43 43 chr9 78349444 78349490 -63921954 - L2 LINE L2 -88 3184 3139 2626 53 0 0 chr9 78350535 78350839 -63920605 - AluY SINE Alu -7 304 1 303 255 21 32 chr9 78351128 78351222 -63920222 - L2 LINE L2 -46 3267 3175 285 265 82 20 chr9 78351208 78351355 -63920089 - L2 LINE L2 -262 3010 2855 * 1885 141 21 3 chr9 78351619 78351910 -63919534 + AluJb SINE Alu 12 307 -5 190 209 23 0 chr9 78352171 78352214 -63919230 - L2 LINE L2 -1 3312 3269 1980 133 4 0 chr9 78352371 78352649 -63918795 + AluSx SINE Alu 1 279 -33 207 0 0 0 chr9 78353216 78353239 -63918205 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 2022 161 10 3 chr9 78353521 78353831 -63917613 - AluJb SINE Alu 0 312 1 2259 113 0 7 chr9 78355055 78355365 -63916079 + AluSx SINE Alu 1 308 -4 1498 129 48 24 chr9 78355474 78355655 -63915789 + L1PB4 LINE L1 5890 6080 -76 2084 144 7 0 chr9 78355655 78355961 -63915483 + AluSx SINE Alu 1 308 -4 1498 129 48 24 chr9 78355961 78356027 -63915417 + L1PB4 LINE L1 6080 6143 -13 807 120 0 0 chr9 78356485 78356618 -63914826 - AluSg/x SINE Alu 0 307 175 2148 96 0 14 chr9 78357769 78358051 -63913393 - AluSx SINE Alu -22 290 13 643 229 34 39 chr9 78358552 78358731 -63912713 + MER5B DNA MER1_type 1 178 0 3302 89 5 0 chr9 78359090 78359516 -63911928 - MSTA LTR MaLR 0 428 1 250 289 21 62 chr9 78360909 78361006 -63910438 + MER58B DNA MER1_type 4 96 -245 734 150 90 60 chr9 78361035 78361202 -63910242 + MER58B DNA MER1_type 168 339 -2 560 170 31 160 chr9 78361407 78361461 -63909983 + MLT1C-int LTR MaLR 1148 1207 -164 2476 79 0 0 chr9 78361461 78361765 -63909679 - AluY SINE Alu -7 304 1 560 170 31 160 chr9 78361765 78361849 -63909595 + MLT1C-int LTR MaLR 1207 1207 -164 1522 172 7 38 chr9 78361849 78362139 -63909305 - AluJb SINE Alu -31 281 1 560 170 31 160 chr9 78362139 78362280 -63909164 + MLT1C-int LTR MaLR 1207 1364 -7 1661 197 70 59 chr9 78362280 78362736 -63908708 + MLT1C LTR MaLR 7 467 0 1522 120 65 5 chr9 78363312 78363529 -63907915 - MER30 DNA MER1_type 0 230 1 2359 97 0 3 chr9 78363554 78363862 -63907582 - AluSq SINE Alu -6 307 1 1409 279 52 20 chr9 78365383 78365842 -63905602 + Zaphod DNA AcHobo 204 677 -3354 672 228 12 6 chr9 78365834 78365996 -63905448 + Zaphod DNA AcHobo 3289 3451 -580 * 320 275 28 84 chr9 78365996 78366035 -63905409 - MIR SINE MIR -81 181 141 3221 100 21 5 chr9 78366035 78366456 -63904988 + MSTA LTR MaLR 1 428 0 320 275 28 84 chr9 78366456 78366558 -63904886 - MIR SINE MIR -121 141 48 330 271 105 8 chr9 78368014 78368147 -63903297 - MIR SINE MIR -70 192 47 1964 131 3 14 chr9 78369117 78369407 -63902037 - AluSx SINE Alu -25 287 1 394 271 194 0 chr9 78369881 78370036 -63901408 + MER113 DNA MER1_type? 2 186 -335 248 306 108 18 chr9 78370658 78370769 -63900675 + L2 LINE L2 3190 3310 -3 2310 63 3 35 chr9 78371184 78371501 -63899943 + AluY SINE Alu 1 307 -4 209 336 130 23 chr9 78371594 78371725 -63899719 - MER5A DNA MER1_type -43 146 2 2029 124 3 3 chr9 78372294 78372576 -63898868 - AluSx SINE Alu -30 282 1 6297 132 28 5 chr9 78372875 78373990 -63897454 - L1MA4A LINE L1 -3 7002 5864 1724 184 3 23 chr9 78373990 78374300 -63897144 - AluJo SINE Alu -8 304 1 12759 184 33 52 chr9 78374300 78379812 -63891632 - L1MA4A LINE L1 -1441 5407 1 1769 134 4 0 chr9 78380347 78380594 -63890850 + AluSx SINE Alu 1 248 -64 186 43 0 0 chr9 78380598 78380621 -63890823 + (A)n Simple_repeat Simple_repeat 1 23 0 2098 80 4 4 chr9 78381894 78382168 -63889276 + AluSx SINE Alu 35 308 -4 180 246 148 0 chr9 78382436 78382497 -63888947 - L2 LINE L2 -2 3311 3242 592 259 15 0 chr9 78382791 78382922 -63888522 - MER94 DNA DNA -1 133 1 344 250 0 48 chr9 78383602 78383706 -63887738 + MIR SINE MIR 56 154 -108 1157 206 68 101 chr9 78384001 78384399 -63887045 - MLT1C LTR MaLR 0 390 6 2253 106 17 3 chr9 78384857 78385159 -63886285 - AluSc SINE Alu -3 306 1 917 328 92 22 chr9 78385638 78386040 -63885404 + MER115 DNA AcHobo 6 435 -258 2194 104 47 0 chr9 78387783 78388082 -63883362 + AluSq SINE Alu 1 313 0 421 316 123 24 chr9 78389413 78389910 -63881534 + L1ME4a LINE L1 5313 5858 -263 265 278 42 67 chr9 78389961 78390083 -63881361 + MIR SINE MIR 20 154 -90 22 35 0 0 chr9 78390499 78390528 -63880916 + AT_rich Low_complexity Low_complexity 1 29 0 381 285 86 32 chr9 78390799 78390985 -63880459 + L1MD1 LINE L1 5414 5609 -2199 296 213 112 121 chr9 78390997 78391149 -63880295 + L1MC4 LINE L1 7741 7890 -152 1796 167 10 3 chr9 78391149 78391442 -63880002 + AluSx SINE Alu 1 295 -17 296 213 112 121 chr9 78391442 78391594 -63879850 + L1MC4 LINE L1 7890 8042 0 327 281 58 59 chr9 78391634 78391878 -63879566 + L1MD1 LINE L1 5683 5884 -286 2121 131 3 0 chr9 78391888 78392185 -63879259 + AluSx SINE Alu 1 298 -14 201 133 0 0 chr9 78393107 78393137 -63878307 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 * 237 284 14 14 chr9 78393135 78393209 -63878235 + GA-rich Low_complexity Low_complexity 1 74 0 251 286 109 34 chr9 78393809 78393928 -63877516 - MIR3 SINE MIR -37 171 44 302 263 107 80 chr9 78394013 78394351 -63877093 + L1MC4 LINE L1 7693 8039 -3 225 128 0 0 chr9 78394841 78394888 -63876556 + (A)n Simple_repeat Simple_repeat 1 47 0 341 235 12 35 chr9 78395911 78395996 -63875448 - MER5B DNA MER1_type -2 176 94 22 56 0 0 chr9 78396165 78396201 -63875243 + AT_rich Low_complexity Low_complexity 1 36 0 1671 158 0 82 chr9 78396212 78396541 -63874903 - AluJb SINE Alu -10 302 1 1067 138 15 12 chr9 78397382 78397712 -63873732 + L1MB4 LINE L1 5746 6156 -24 424 261 139 0 chr9 78400113 78400228 -63871216 - MER5B DNA MER1_type -2 176 46 308 137 0 0 chr9 78400241 78400292 -63871152 - Alu SINE Alu -10 292 242 239 224 0 0 chr9 78400310 78400359 -63871085 - MER5B DNA MER1_type -129 49 1 2009 139 0 20 chr9 78400472 78400773 -63870671 + AluSx SINE Alu 1 295 -17 249 190 103 52 chr9 78400901 78401017 -63870427 - L1ME4a LINE L1 -155 5966 5845 1461 185 22 13 chr9 78401131 78401369 -63870075 + MER33 DNA MER1_type 1 244 -2341 2112 134 0 13 chr9 78401369 78401682 -63869762 - AluSx SINE Alu -2 310 2 1461 185 22 13 chr9 78401682 78401756 -63869688 + MER33 DNA MER1_type 244 316 -8 594 235 112 18 chr9 78401850 78402020 -63869424 + MER20 DNA MER1_type 26 211 -8 2240 138 0 0 chr9 78402068 78402380 -63869064 - AluSx SINE Alu 0 312 1 25 0 0 0 chr9 78402840 78402865 -63868579 + AT_rich Low_complexity Low_complexity 1 25 0 2404 85 0 0 chr9 78403510 78403805 -63867639 + AluSx SINE Alu 1 295 -17 279 268 80 18 chr9 78403976 78404088 -63867356 + L2 LINE L2 3151 3269 -3 838 101 0 0 chr9 78404094 78404203 -63867241 + AluSx SINE Alu 1 109 -203 1453 106 5 0 chr9 78404249 78404447 -63866997 + AluSx SINE Alu 112 310 0 341 264 136 18 chr9 78405365 78405475 -63865969 - L2 LINE L2 -11 3261 3139 2227 119 0 0 chr9 78405682 78405984 -63865460 - AluSg SINE Alu -2 308 7 3415 145 30 42 chr9 78406133 78406802 -63864642 - L1MB8 LINE L1 -2 6176 5516 233 244 221 0 chr9 78406905 78406991 -63864453 - MIR SINE MIR -48 214 110 673 210 51 0 chr9 78407339 78407476 -63863968 + MER33 DNA MER1_type 1 132 -85 296 105 5 2 chr9 78407476 78407699 -63863745 + AluSp SINE Alu 33 300 -3 637 117 29 8 chr9 78407713 78407865 -63863579 + Charlie5 DNA MER1_type 2354 2550 -62 2327 99 3 0 chr9 78409090 78409393 -63862051 + AluSq SINE Alu 1 304 -9 27 29 0 0 chr9 78409393 78409427 -63862017 + AT_rich Low_complexity Low_complexity 1 34 0 716 137 0 48 chr9 78409961 78410085 -63861359 + FLAM_C SINE Alu 18 135 -8 1192 114 6 0 chr9 78411156 78411323 -63860121 + AluSq SINE Alu 133 300 -13 308 347 35 29 chr9 78411434 78411604 -63859840 + MER5B DNA MER1_type 2 172 -6 472 271 21 21 chr9 78411668 78411808 -63859636 - MER5B DNA MER1_type -36 142 3 2211 100 0 32 chr9 78413910 78414221 -63857223 + AluSc SINE Alu 1 301 -8 193 244 0 0 chr9 78415848 78415893 -63855551 - L2 LINE L2 -2 3311 3267 436 241 0 0 chr9 78415999 78416082 -63855362 - MER94 DNA DNA -1 133 51 306 0 0 0 chr9 78416928 78416962 -63854482 + (CA)n Simple_repeat Simple_repeat 1 34 0 227 267 50 0 chr9 78416962 78417022 -63854422 - MER94 DNA DNA -71 63 1 624 238 146 4 chr9 78417222 78417395 -63854049 + MIR SINE MIR 16 197 -62 191 338 62 12 chr9 78418723 78418803 -63852641 + L2 LINE L2 3128 3211 -61 410 267 178 0 chr9 78419639 78419785 -63851659 - MER5A DNA MER1_type -1 188 17 340 288 173 41 chr9 78419834 78420077 -63851367 + Charlie7 DNA MER1_type 27 301 -2311 324 152 76 67 chr9 78420232 78420337 -63851107 + Charlie7 DNA MER1_type 2507 2612 0 4570 78 5 0 chr9 78420528 78421079 -63850365 - MER41A LTR ERV1 0 554 1 2448 97 31 6 chr9 78421117 78421469 -63849975 + MER34C LTR ERV1 6 366 -219 506 335 59 0 chr9 78421473 78421676 -63849768 - L3 LINE CR1 -377 1200 986 315 118 39 0 chr9 78422100 78422151 -63849293 - MLT1D LTR MaLR -14 491 439 4211 171 53 30 chr9 78422196 78422389 -63849055 + L1MB5 LINE L1 5258 5445 -729 2757 164 46 82 chr9 78422389 78423024 -63848420 - LTR9 LTR ERV1 0 612 1 4211 171 53 30 chr9 78423024 78423720 -63847724 + L1MB5 LINE L1 5445 6167 -7 2082 169 67 30 chr9 78423751 78424182 -63847262 - MLT1D LTR MaLR -58 447 1 282 192 82 27 chr9 78424192 78424265 -63847179 + LTR67 LTR ERVL 479 555 -2 210 154 0 0 chr9 78425308 78425347 -63846097 + T-rich Low_complexity Low_complexity 1 39 0 2197 104 3 3 chr9 78425840 78426137 -63845307 - AluSx SINE Alu -15 297 1 378 200 0 38 chr9 78427102 78427182 -63844262 - AluS SINE Alu -226 77 1 409 279 99 60 chr9 78427370 78427571 -63843873 + MIR SINE MIR 27 235 -27 2410 63 40 0 chr9 78427824 78428123 -63843321 - AluY SINE Alu 0 311 1 421 238 70 121 chr9 78428315 78428588 -63842856 + Charlie8 DNA MER1_type 72 1417 -1000 2022 113 65 0 chr9 78429256 78429531 -63841913 - AluSx SINE Alu -19 293 1 228 273 15 30 chr9 78431093 78431159 -63840285 + L2 LINE L2 3205 3269 -3 600 122 10 10 chr9 78432582 78432680 -63838764 + MER4A LTR ERV1 1 98 -566 1843 122 163 73 chr9 78432680 78433049 -63838395 + MER4A LTR ERV1 263 664 0 878 67 25 34 chr9 78433541 78433660 -63837784 - AluSq/x SINE Alu -195 118 1 296 281 0 34 chr9 78434620 78434709 -63836735 - MIR SINE MIR -121 141 56 1855 158 20 7 chr9 78435515 78435813 -63835631 - AluSx SINE Alu -10 302 1 1759 112 98 21 chr9 78436810 78437097 -63834347 + AluSx SINE Alu 1 309 -3 264 378 53 68 chr9 78437943 78438266 -63833178 - L2 LINE L2 -19 3253 2936 575 118 69 0 chr9 78439022 78439124 -63832320 + L1MA8 LINE L1 6181 6289 -2 2279 91 0 3 chr9 78439668 78439966 -63831478 + AluSq SINE Alu 1 297 -16 1697 101 14 78 chr9 78439994 78440347 -63831097 + MER61C LTR ERV1 1 424 -10 1107 176 11 0 chr9 78441799 78441975 -63829469 + MER45A DNA AcHobo 1 178 0 2134 76 83 10 chr9 78442715 78443005 -63828439 + AluY SINE Alu 1 311 0 281 216 46 60 chr9 78444394 78444536 -63826908 + MER34 LTR ERV1 1 165 -377 1011 113 0 0 chr9 78444565 78444716 -63826728 + L1MA8 LINE L1 5760 5910 -381 391 313 138 6 chr9 78444760 78444920 -63826524 + MIR3 SINE MIR 18 198 -10 181 297 10 69 chr9 78445760 78445781 -63825663 + MIR3 SINE MIR 104 125 -83 1692 223 35 30 chr9 78445781 78446153 -63825291 + MLT1A2 LTR MaLR 1 374 0 181 297 10 69 chr9 78446153 78446232 -63825212 + MIR3 SINE MIR 125 198 -10 1586 188 29 44 chr9 78446689 78447029 -63824415 - MLT1A2 LTR MaLR -39 335 1 244 200 0 0 chr9 78447029 78447074 -63824370 - MLT1A2-int LTR MaLR 0 1735 1691 1682 224 46 35 chr9 78447092 78447462 -63823982 + MLT1-int LTR MaLR 913 1286 -85 360 244 23 0 chr9 78447605 78447691 -63823753 - MLT1A2-int LTR MaLR -962 773 686 3181 195 76 14 chr9 78447843 78448590 -63822854 - MLT1A2-int LTR MaLR -484 887 2 1564 207 14 50 chr9 78448600 78448759 -63822685 - MLT1A2 LTR MaLR -24 350 187 2874 170 162 36 chr9 78448759 78449458 -63821986 + LTR48 LTR ERV1 1 787 0 1564 207 14 50 chr9 78449458 78449661 -63821783 - MLT1A2 LTR MaLR -187 187 1 1949 232 69 9 chr9 78450183 78450619 -63820825 - LTR40b LTR ERVL 0 462 1 262 252 85 56 chr9 78451133 78451273 -63820171 - MIR SINE MIR -67 141 18 231 186 0 43 chr9 78451530 78451600 -63819844 + A-rich Low_complexity Low_complexity 4 70 0 2806 112 21 78 chr9 78451609 78452144 -63819300 + L1MA10 LINE L1 5392 5895 -417 690 213 7 26 chr9 78452144 78452299 -63819145 - MLT1A2 LTR MaLR -222 152 1 1504 248 26 20 chr9 78452309 78452755 -63818689 + L1MA10 LINE L1 5887 6334 0 925 214 130 53 chr9 78453032 78453354 -63818090 - MLT1J2 LTR MaLR 0 450 104 450 0 0 0 chr9 78454730 78454780 -63816664 + (CA)n Simple_repeat Simple_repeat 2 51 0 189 0 0 0 chr9 78454956 78454977 -63816467 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2363 95 0 3 chr9 78455892 78456197 -63815247 - AluY SINE Alu -7 304 1 822 292 155 34 chr9 78456312 78457152 -63814292 + L2 LINE L2 2369 3299 -14 346 227 0 0 chr9 78457478 78457544 -63813900 + Charlie5 DNA MER1_type 1 66 -2546 654 150 23 127 chr9 78457544 78457609 -63813835 + Charlie5 DNA MER1_type 2428 2498 -126 360 0 0 0 chr9 78457609 78457649 -63813795 + (TA)n Simple_repeat Simple_repeat 2 41 0 2915 3 0 0 chr9 78457649 78457960 -63813484 - AluYa5 SINE Alu 0 311 1 654 150 23 127 chr9 78457960 78458113 -63813331 + Charlie5 DNA MER1_type 2496 2624 0 2001 136 20 0 chr9 78458234 78458528 -63812916 - AluSq SINE Alu -13 300 1 673 237 73 18 chr9 78458550 78458785 -63812659 + MIR SINE MIR 16 262 0 225 94 0 0 chr9 78459114 78459146 -63812298 + (CA)n Simple_repeat Simple_repeat 1 32 0 384 297 88 20 chr9 78459206 78459354 -63812090 - MIR3 SINE MIR -12 196 39 427 162 27 0 chr9 78459595 78459669 -63811775 + AluS SINE Alu 2 77 -241 11937 91 17 1 chr9 78459670 78462018 -63809426 + L1PA7 LINE L1 3785 6153 -1 1687 187 6 35 chr9 78462233 78462549 -63808895 - AluJb SINE Alu -5 307 1 1003 248 151 8 chr9 78463229 78463580 -63807864 - MLT1J LTR MaLR -110 401 1 1808 207 259 51 chr9 78463923 78464604 -63806840 + MER52A LTR ERV1 1 805 -473 3091 184 22 6 chr9 78464608 78465142 -63806302 + MER52A LTR ERV1 1211 1753 -2 528 330 133 34 chr9 78465151 78465775 -63805669 - L2 LINE L2 0 3272 2589 439 313 129 5 chr9 78465868 78466069 -63805375 + MIR SINE MIR 14 239 -23 1613 175 28 3 chr9 78466281 78466567 -63804877 + AluJo SINE Alu 13 305 -7 376 143 0 44 chr9 78466567 78466658 -63804786 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 1211 134 10 35 chr9 78467157 78467335 -63804109 - L1PB1 LINE L1 -4 6147 5973 836 106 0 0 chr9 78467335 78467439 -63804005 - U6 snRNA snRNA 0 107 4 1211 134 10 35 chr9 78467439 78467462 -63803982 - L1PB1 LINE L1 -178 5973 5951 194 133 0 0 chr9 78468132 78468162 -63803282 - MER5C DNA MER1_type -200 124 95 2527 144 59 7 chr9 78468581 78468990 -63802454 - MSTB1 LTR MaLR -2 430 1 1252 172 26 13 chr9 78469707 78469939 -63801505 + AluJo SINE Alu 1 235 -77 816 279 159 51 chr9 78470328 78471013 -63800431 - L2 LINE L2 -38 3275 2489 708 228 132 36 chr9 78471414 78471633 -63799811 - MIR SINE MIR -21 241 2 819 211 18 95 chr9 78472864 78473148 -63798296 + L1MC4 LINE L1 6775 7036 -1006 2266 105 3 7 chr9 78473979 78474285 -63797159 + AluSx SINE Alu 1 305 -7 1112 297 70 14 chr9 78475710 78476265 -63795179 - L1MC4 LINE L1 0 8042 7457 2408 84 13 0 chr9 78476333 78476632 -63794812 + AluSx SINE Alu 1 303 -9 217 289 0 0 chr9 78476789 78476841 -63794603 + MER5A DNA MER1_type 128 179 -10 258 286 165 8 chr9 78476935 78477068 -63794376 + MLT1J LTR MaLR 27 180 -331 211 122 24 24 chr9 78477174 78477215 -63794229 - MER5A DNA MER1_type -114 75 35 252 258 72 21 chr9 78477224 78477321 -63794123 + MLT1J LTR MaLR 232 333 -178 227 218 82 64 chr9 78477351 78477461 -63793983 + MLT1J LTR MaLR 400 511 0 1742 148 0 44 chr9 78477484 78477782 -63793662 + AluJo SINE Alu 6 290 -22 216 281 8 83 chr9 78478407 78478528 -63792916 + L2 LINE L2 3198 3309 -4 586 204 0 0 chr9 78478581 78478684 -63792760 - MER58 DNA MER1_type 0 2420 2318 3412 166 16 38 chr9 78478707 78479593 -63791851 + L1MB4 LINE L1 4961 5841 -339 1918 133 47 13 chr9 78479593 78479893 -63791551 + MLT2B3 LTR ERVL 1 310 -244 29 28 0 0 chr9 78481167 78481203 -63790241 + AT_rich Low_complexity Low_complexity 1 36 0 800 250 126 41 chr9 78481310 78481722 -63789722 + L1ME4a LINE L1 5548 5994 -127 2490 77 3 13 chr9 78481782 78482094 -63789350 + AluSp SINE Alu 1 309 -4 273 337 0 11 chr9 78482118 78482213 -63789231 + MIR3 SINE MIR 113 206 -2 24 0 0 0 chr9 78482230 78482254 -63789190 + AT_rich Low_complexity Low_complexity 1 24 0 238 276 92 51 chr9 78482612 78482710 -63788734 - L2 LINE L2 -24 3248 3147 248 200 55 0 chr9 78483506 78483561 -63787883 - MER112 DNA MER1_type 0 260 203 1323 201 8 26 chr9 78483665 78483929 -63787515 - AluJo SINE Alu -45 267 9 981 194 0 0 chr9 78484278 78484464 -63786980 - L1PA16 LINE L1 -20 6146 5961 963 306 69 35 chr9 78485055 78485817 -63785627 - L1MC/D LINE L1 -753 5393 5017 2281 100 0 3 chr9 78485817 78486107 -63785337 - AluSp SINE Alu -24 289 1 963 306 69 35 chr9 78486107 78486363 -63785081 - L1MC/D LINE L1 -1129 5017 4771 1602 161 3 35 chr9 78486369 78486679 -63784765 - AluSx SINE Alu -12 300 1 32099 108 15 54 chr9 78487240 78493647 -63777797 + L1PA7 LINE L1 12 6153 -1 1698 187 6 35 chr9 78493862 78494178 -63777266 - AluJb SINE Alu -5 307 1 995 248 151 8 chr9 78494858 78495209 -63776235 - MLT1J LTR MaLR -110 401 1 207 69 0 0 chr9 78495228 78495257 -63776187 + (A)n Simple_repeat Simple_repeat 1 29 0 1932 198 120 35 chr9 78495550 78496231 -63775213 + MER52A LTR ERV1 1 805 -473 3145 184 22 6 chr9 78496235 78496769 -63774675 + MER52A LTR ERV1 1211 1753 -2 436 323 75 17 chr9 78496971 78497329 -63774115 - L2 LINE L2 -193 3079 2683 384 318 127 5 chr9 78497495 78497684 -63773760 + MIR SINE MIR 14 225 -37 1618 175 28 3 chr9 78497909 78498195 -63773249 + AluJo SINE Alu 13 305 -7 376 143 0 44 chr9 78498195 78498286 -63773158 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 1158 134 10 35 chr9 78498785 78498963 -63772481 - L1PB1 LINE L1 -4 6147 5973 797 106 0 0 chr9 78498963 78499067 -63772377 - U6 snRNA snRNA 0 107 4 1158 134 10 35 chr9 78499067 78499090 -63772354 - L1PB1 LINE L1 -178 5973 5951 185 133 0 0 chr9 78499760 78499790 -63771654 - MER5C DNA MER1_type -200 124 95 2378 144 59 7 chr9 78500209 78500618 -63770826 - MSTB1 LTR MaLR -2 430 1 1272 172 26 13 chr9 78501335 78501567 -63769877 + AluJo SINE Alu 1 235 -77 695 287 139 49 chr9 78501956 78502593 -63768851 - L2 LINE L2 -38 3275 2555 639 228 132 36 chr9 78503042 78503261 -63768183 - MIR SINE MIR -21 241 2 851 216 18 92 chr9 78504492 78504775 -63766669 + L1MC4 LINE L1 6775 7036 -1006 548 198 80 70 chr9 78505043 78505230 -63766214 + MLT2B3 LTR ERVL 358 546 -8 1731 150 46 29 chr9 78505230 78505560 -63765884 + L1MB4 LINE L1 5829 6167 -13 402 21 0 0 chr9 78505560 78505607 -63765837 + (TG)n Simple_repeat Simple_repeat 2 48 0 1731 150 46 29 chr9 78505607 78505622 -63765822 + L1MB4 LINE L1 6167 6180 0 1858 129 37 27 chr9 78505629 78505923 -63765521 + AluSx SINE Alu 1 297 -15 397 239 11 0 chr9 78506067 78506159 -63765285 - L1PB4 LINE L1 -11 6145 6053 481 300 78 39 chr9 78506270 78506603 -63764841 - L1ME LINE L1 -430 5691 5346 2340 172 5 36 chr9 78506902 78507350 -63764094 - MER31B LTR ERV1 -31 435 2 694 324 100 3 chr9 78507508 78507888 -63763556 + LTR33 LTR ERVL 2 418 -103 277 211 19 0 chr9 78507900 78507952 -63763492 - Zaphod DNA AcHobo -1 4030 3978 304 266 25 0 chr9 78508296 78508375 -63763069 + LTR33 LTR ERVL 441 521 0 1451 170 23 46 chr9 78508893 78509199 -63762245 + L1MB7 LINE L1 5886 6184 0 519 297 9 44 chr9 78509284 78509348 -63762096 - MIR SINE MIR -10 252 187 1126 191 92 68 chr9 78509348 78509684 -63761760 - MER2 DNA MER2_type 0 344 1 519 297 9 44 chr9 78509684 78509848 -63761596 - MIR SINE MIR -75 187 32 234 0 0 0 chr9 78510443 78510469 -63760975 + (TC)n Simple_repeat Simple_repeat 1 26 0 2402 85 3 0 chr9 78511007 78511312 -63760132 + AluSq SINE Alu 1 306 -7 279 279 0 0 chr9 78512028 78512089 -63759355 - MIR SINE MIR -60 148 88 354 218 0 23 chr9 78512464 78512551 -63758893 + MER5B DNA MER1_type 2 86 -92 655 275 119 57 chr9 78512836 78513221 -63758223 - MLT1H LTR MaLR 0 549 141 668 307 198 10 chr9 78513221 78513514 -63757930 + LTR16B LTR ERVL 1 348 -116 1815 134 34 0 chr9 78513543 78513812 -63757632 - AluSx SINE Alu -5 307 30 377 203 0 0 chr9 78513812 78513875 -63757569 - AluS SINE Alu -240 63 1 362 196 54 54 chr9 78513892 78513984 -63757460 + LTR16B LTR ERVL 373 464 0 * 535 207 82 15 chr9 78513984 78514118 -63757326 - MLT1H LTR MaLR -404 145 3 759 312 25 35 chr9 78514118 78514403 -63757041 + MLT1K LTR MaLR 68 349 -239 1275 235 55 38 chr9 78514444 78514567 -63756877 - MLT1E LTR MaLR 0 593 474 1708 150 8 0 chr9 78514567 78514834 -63756610 - AluSq SINE Alu -13 300 32 1275 235 55 38 chr9 78514834 78515198 -63756246 - MLT1E LTR MaLR -119 474 52 814 229 54 21 chr9 78515700 78515859 -63755585 - MIR SINE MIR -5 257 86 2061 135 0 3 chr9 78515859 78516155 -63755289 + AluSq SINE Alu 1 295 -18 814 229 54 21 chr9 78516155 78516235 -63755209 - MIR SINE MIR -176 86 10 1104 156 152 31 chr9 78517194 78517315 -63754129 + MER33 DNA MER1_type 1 106 -2479 1496 183 71 49 chr9 78517315 78517681 -63753763 + MLT1A2 LTR MaLR 1 374 0 1104 156 152 31 chr9 78517681 78517848 -63753596 + MER33 DNA MER1_type 106 324 0 3634 153 40 61 chr9 78517884 78517946 -63753498 - L1MD1 LINE L1 0 6242 6180 2255 123 0 0 chr9 78517946 78518246 -63753198 + AluSx SINE Alu 2 301 -11 3634 153 40 61 chr9 78518246 78518958 -63752486 - L1MD1 LINE L1 -62 6180 5484 2477 53 17 3 chr9 78518959 78519260 -63752184 - AluY SINE Alu -6 305 1 3963 129 53 88 chr9 78519727 78520541 -63750903 - LTR1 LTR ERV1 0 785 1 1950 135 0 10 chr9 78520908 78521205 -63750239 - AluSx SINE Alu -14 298 5 2156 95 0 27 chr9 78521226 78521520 -63749924 - AluY SINE Alu -9 302 17 1010 114 0 0 chr9 78521523 78521654 -63749790 - AluYa5 SINE Alu -180 131 1 842 200 12 12 chr9 78522051 78522211 -63749233 + FRAM SINE Alu 1 160 -16 1848 180 0 3 chr9 78522911 78523216 -63748228 + AluJb SINE Alu 2 305 -7 22 0 0 0 chr9 78523219 78523241 -63748203 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr9 78523270 78523295 -63748149 + (T)n Simple_repeat Simple_repeat 1 25 0 6907 132 15 10 chr9 78523399 78524863 -63746581 + L1MA3 LINE L1 4805 6274 -31 2147 137 22 33 chr9 78524866 78525232 -63746212 + THE1B LTR MaLR 3 364 0 3199 88 6 52 chr9 78525232 78525634 -63745810 + THE1B-int LTR MaLR 1 379 -1201 2357 95 0 16 chr9 78525634 78525949 -63745495 + AluY SINE Alu 1 310 -1 3199 88 6 52 chr9 78525949 78526026 -63745418 + THE1B-int LTR MaLR 379 458 -1122 198 0 0 0 chr9 78526134 78526156 -63745288 + (GGAA)n Simple_repeat Simple_repeat 1 22 0 1477 263 99 47 chr9 78526159 78526909 -63744535 + L1MC4 LINE L1 7097 7885 -157 239 241 0 72 chr9 78526918 78527001 -63744443 + L1MC4 LINE L1 7966 8042 0 489 164 238 0 chr9 78527025 78527147 -63744297 + L1ME1 LINE L1 5991 6141 -25 2204 129 0 10 chr9 78527463 78527773 -63743671 + AluSx SINE Alu 1 307 -5 2264 102 3 0 chr9 78528220 78528514 -63742930 - AluSp SINE Alu -14 299 5 231 380 0 0 chr9 78528911 78528990 -63742454 - MIR SINE MIR -177 85 7 863 137 56 25 chr9 78528998 78529159 -63742285 + MLT1B LTR MaLR 8 173 -217 1232 188 62 12 chr9 78529167 78529407 -63742037 + AluJb SINE Alu 6 257 -55 1269 142 4 67 chr9 78529412 78529665 -63741779 + MLT1B LTR MaLR 154 390 0 789 251 112 35 chr9 78530899 78531246 -63740198 - MER115 DNA AcHobo -17 676 303 496 280 47 51 chr9 78531275 78531511 -63739933 - MER115 DNA AcHobo -458 235 1 1988 239 40 44 chr9 78533625 78534331 -63737113 - L1M4 LINE L1 -1127 5019 4317 * 18037 36 4 0 chr9 78534328 78537237 -63734207 - L1PA4 LINE L1 0 6155 3238 5256 89 14 8 chr9 78537232 78537950 -63733494 - L1P LINE L1 -5424 722 1 * 2433 253 50 48 chr9 78537986 78538150 -63733294 - L1M4 LINE L1 -1872 4274 4112 1711 187 3 0 chr9 78538150 78538439 -63733005 - AluJb SINE Alu -22 290 1 2433 253 50 48 chr9 78538439 78538538 -63732906 - L1M4 LINE L1 -2034 4112 4015 2324 88 0 0 chr9 78538538 78538822 -63732622 - AluSc SINE Alu -20 289 6 2433 253 50 48 chr9 78538822 78539491 -63731953 - L1M4 LINE L1 -2131 4015 3339 29 0 0 0 chr9 78539508 78539537 -63731907 + AT_rich Low_complexity Low_complexity 1 29 0 2264 121 25 36 chr9 78539560 78539924 -63731520 - THE1B LTR MaLR -2 362 3 8431 105 2 3 chr9 78539926 78541062 -63730382 - THE1B-int LTR MaLR 0 1580 447 242 274 8 51 chr9 78541180 78541297 -63730147 - MLT1K LTR MaLR -150 438 327 1649 62 24 0 chr9 78541340 78541549 -63729895 + AluSp SINE Alu 1 214 -99 348 230 27 0 chr9 78541556 78541630 -63729814 + MER5A DNA MER1_type 11 86 -103 253 288 14 27 chr9 78541650 78541723 -63729721 + MER81 DNA DNA 40 111 -3 357 219 14 0 chr9 78541731 78541804 -63729640 + MER5A DNA MER1_type 88 161 -28 2331 199 52 62 chr9 78542304 78542932 -63728512 + LTR29 LTR ERV1 1 622 0 1097 164 58 88 chr9 78542998 78543224 -63728220 - MER20 DNA MER1_type 0 219 1 369 265 20 0 chr9 78543901 78544003 -63727441 + MER33 DNA MER1_type 2 105 -219 2343 90 3 0 chr9 78544009 78544308 -63727136 - AluSp SINE Alu -2 311 12 1773 139 7 21 chr9 78544379 78544660 -63726784 - AluJb SINE Alu -26 286 10 281 46 58 161 chr9 78544673 78544760 -63726684 + MER33 DNA MER1_type 199 276 -87 827 257 82 12 chr9 78544791 78545036 -63726408 + MLT1K LTR MaLR 173 434 -154 692 278 11 6 chr9 78545209 78545389 -63726055 - MLT1H1 LTR MaLR -374 181 1 2534 30 0 10 chr9 78545898 78546193 -63725251 + AluY SINE Alu 1 292 -19 209 273 10 61 chr9 78546236 78546335 -63725109 - MIR SINE MIR 0 262 169 2380 98 0 3 chr9 78546382 78546688 -63724756 - AluSg SINE Alu -5 305 1 553 254 0 15 chr9 78546701 78546835 -63724609 + MLT1K LTR MaLR 438 569 -19 718 276 109 81 chr9 78547043 78547562 -63723882 - L2 LINE L2 -49 3264 2737 1654 124 31 59 chr9 78547562 78547852 -63723592 - AluJb SINE Alu -8 304 23 718 276 109 81 chr9 78547852 78548026 -63723418 - L2 LINE L2 -576 2737 2569 291 304 132 41 chr9 78548163 78548429 -63723015 - L2 LINE L2 -769 2545 2256 2264 84 0 29 chr9 78548562 78548871 -63722573 + AluSx SINE Alu 1 300 -12 241 311 33 22 chr9 78548877 78549057 -63722387 + L1M4 LINE L1 4771 4952 -1194 3150 195 76 16 chr9 78549183 78549931 -63721513 - MLT1A2-int LTR MaLR -484 887 2 1582 204 14 50 chr9 78549941 78550100 -63721344 - MLT1A2 LTR MaLR -24 350 187 2874 170 162 36 chr9 78550100 78550799 -63720645 + LTR48 LTR ERV1 1 787 0 1582 204 14 50 chr9 78550799 78551002 -63720442 - MLT1A2 LTR MaLR -187 187 1 1949 232 69 9 chr9 78551524 78551960 -63719484 - LTR40b LTR ERVL 0 462 1 262 252 85 56 chr9 78552474 78552614 -63718830 - MIR SINE MIR -67 141 18 231 186 0 43 chr9 78552871 78552941 -63718503 + A-rich Low_complexity Low_complexity 4 70 0 2794 112 20 82 chr9 78552950 78553487 -63717957 + L1MA10 LINE L1 5392 5895 -417 690 213 7 26 chr9 78553487 78553642 -63717802 - MLT1A2 LTR MaLR -222 152 1 1504 248 26 20 chr9 78553652 78554098 -63717346 + L1MA10 LINE L1 5887 6334 0 925 214 130 53 chr9 78554375 78554697 -63716747 - MLT1J2 LTR MaLR 0 450 104 450 0 0 0 chr9 78556073 78556123 -63715321 + (CA)n Simple_repeat Simple_repeat 2 51 0 189 0 0 0 chr9 78556299 78556320 -63715124 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2363 95 0 3 chr9 78557235 78557540 -63713904 - AluY SINE Alu -7 304 1 822 292 155 34 chr9 78557655 78558495 -63712949 + L2 LINE L2 2369 3299 -14 346 227 0 0 chr9 78558821 78558887 -63712557 + Charlie5 DNA MER1_type 1 66 -2546 378 0 0 0 chr9 78558952 78558994 -63712450 + (TA)n Simple_repeat Simple_repeat 2 43 0 2562 56 0 31 chr9 78558994 78559313 -63712131 - AluY SINE Alu -2 309 1 4878 172 40 14 chr9 78559313 78560295 -63711149 + L1MCa LINE L1 514 1520 -4906 515 266 107 43 chr9 78561642 78561875 -63709569 + MIR SINE MIR 15 262 0 7790 203 71 80 chr9 78562199 78563132 -63708312 + L1MC4a LINE L1 22 962 -5578 2653 64 0 0 chr9 78563132 78563472 -63707972 + L1PA7 LINE L1 5825 6164 0 7790 203 71 80 chr9 78563472 78563654 -63707790 + L1MC4a LINE L1 962 1144 -5396 1559 91 48 0 chr9 78563654 78563862 -63707582 - L1PA10 LINE L1 -4 6164 5947 7790 203 71 80 chr9 78563862 78564483 -63706961 + L1MC4a LINE L1 1144 1738 -4802 6088 104 18 33 chr9 78564483 78566260 -63705184 + SVA Other Other 2 1384 -2 7790 203 71 80 chr9 78566260 78566842 -63704602 + L1MC4a LINE L1 1738 2324 -4216 519 126 0 0 chr9 78566842 78566937 -63704507 + (CA)n Simple_repeat Simple_repeat 2 96 0 3740 214 32 27 chr9 78566942 78567058 -63704386 + L1MC4a LINE L1 2341 2455 -4085 2083 128 7 0 chr9 78567058 78567347 -63704097 + AluSx SINE Alu 3 293 -19 3740 214 32 27 chr9 78567347 78567873 -63703571 + L1MC4a LINE L1 2455 2977 -3563 1483 114 131 86 chr9 78567873 78568163 -63703281 + AluSx SINE Alu 1 303 -9 3740 214 32 27 chr9 78568163 78568876 -63702568 + L1MC4a LINE L1 2977 3704 -2836 23084 132 23 25 chr9 78568983 78572911 -63698533 + L1M1 LINE L1 12 3933 -3632 561 154 0 11 chr9 78572898 78572989 -63698455 + L1M1 LINE L1 5465 5554 -2011 * 3401 184 20 9 chr9 78572983 78573646 -63697798 + L1MC4a LINE L1 3897 4566 -1974 874 248 109 58 chr9 78573812 78574080 -63697364 + L1MC4a LINE L1 5960 6005 -543 2255 44 34 27 chr9 78574080 78574374 -63697070 + AluY SINE Alu 1 296 -15 874 248 109 58 chr9 78574374 78574602 -63696842 + L1MC4a LINE L1 6005 6220 -328 35 88 0 0 chr9 78574628 78574719 -63696725 + AT_rich Low_complexity Low_complexity 1 91 0 1630 121 7 3 chr9 78575102 78575402 -63696042 - L1M1 LINE L1 -743 5403 5211 1951 127 22 34 chr9 78575402 78575726 -63695718 + L1MA3 LINE L1 5978 6297 -8 2350 177 2 8 chr9 78575732 78576128 -63695316 - MER57A LTR ERV1 -9 394 1 1955 141 7 20 chr9 78577141 78577438 -63694006 + AluSx SINE Alu 8 300 -12 22 56 0 0 chr9 78577919 78577955 -63693489 + AT_rich Low_complexity Low_complexity 1 36 0 269 333 39 31 chr9 78579037 78579166 -63692278 - L2 LINE L2 -16 3256 3127 313 268 62 21 chr9 78579221 78579318 -63692126 + MIR SINE MIR 53 153 -55 568 280 165 9 chr9 78579363 78579581 -63691863 - MIR SINE MIR 0 262 11 14548 237 33 11 chr9 78579726 78584323 -63687121 - L1P4 LINE L1 -695 6909 2224 832 313 17 29 chr9 78584873 78585282 -63686162 - L1P4 LINE L1 -7168 413 10 301 239 0 15 chr9 78586234 78586301 -63685143 - L3 LINE CR1 -2 1575 1510 183 129 0 0 chr9 78586833 78586864 -63684580 + (GGAGAA)n Simple_repeat Simple_repeat 5 35 0 207 0 0 0 chr9 78587692 78587715 -63683729 + (T)n Simple_repeat Simple_repeat 1 23 0 213 39 0 0 chr9 78587891 78587917 -63683527 + (CTCA)n Simple_repeat Simple_repeat 1 26 0 246 62 0 0 chr9 78588369 78588401 -63683043 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 26 0 0 0 chr9 78588931 78588957 -63682487 + AT_rich Low_complexity Low_complexity 1 26 0 385 221 79 21 chr9 78589030 78589170 -63682274 + L1ME LINE L1 5511 5658 -463 8703 169 8 28 chr9 78589277 78591954 -63679490 + L1P3 LINE L1 321 3005 -3456 1988 104 0 4 chr9 78591967 78592237 -63679207 - AluSg SINE Alu -41 269 1 189 0 0 0 chr9 78592488 78592509 -63678935 + (CA)n Simple_repeat Simple_repeat 2 22 0 472 126 137 0 chr9 78593267 78593362 -63678082 - MER53 DNA DNA -81 108 1 206 360 65 26 chr9 78594502 78594655 -63676789 + L2 LINE L2 3039 3197 -75 344 172 0 0 chr9 78594923 78594981 -63676463 + L2 LINE L2 3256 3313 0 219 283 81 20 chr9 78595786 78595885 -63675559 + L2 LINE L2 2833 2937 -377 249 334 84 37 chr9 78595957 78596294 -63675150 - L2 LINE L2 -176 3096 2709 1990 136 30 13 chr9 78597242 78597544 -63673900 - AluSx SINE Alu -5 307 1 2207 102 38 0 chr9 78597829 78598122 -63673322 + AluSp SINE Alu 3 306 -7 278 304 0 13 chr9 78598307 78598386 -63673058 + MIR SINE MIR 179 256 -6 21 0 0 0 chr9 78598511 78598532 -63672912 + AT_rich Low_complexity Low_complexity 1 21 0 496 251 47 23 chr9 78598705 78598876 -63672568 - MLT1K LTR MaLR -17 571 397 262 226 113 102 chr9 78599650 78599924 -63671520 - L1ME4a LINE L1 -101 6020 5744 232 159 0 23 chr9 78599954 78599998 -63671446 - MIR SINE MIR -8 254 212 334 179 0 113 chr9 78600021 78600127 -63671317 - MLT1F1 LTR MaLR 0 567 474 834 239 106 18 chr9 78601055 78601281 -63670163 + MIR SINE MIR 2 247 -15 244 275 43 0 chr9 78601321 78601390 -63670054 - MIR SINE MIR -3 259 188 297 289 0 0 chr9 78601628 78601704 -63669740 + MIR SINE MIR 86 162 -46 396 174 188 49 chr9 78603329 78603473 -63667971 - MER103 DNA DNA 0 166 3 34 65 0 0 chr9 78604163 78604225 -63667219 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr9 78604427 78604448 -63666996 + AT_rich Low_complexity Low_complexity 1 21 0 441 307 107 8 chr9 78604985 78605379 -63666065 - L1ME4a LINE L1 -73 6048 5616 333 303 92 9 chr9 78605922 78606031 -63665413 - L2 LINE L2 -4 3268 3151 22 0 0 0 chr9 78606186 78606208 -63665236 + AT_rich Low_complexity Low_complexity 1 22 0 1632 180 10 17 chr9 78606397 78606697 -63664747 + AluJo SINE Alu 6 303 -9 186 194 28 0 chr9 78606705 78606741 -63664703 + L2 LINE L2 3220 3256 -16 24 32 0 0 chr9 78607537 78607568 -63663876 + AT_rich Low_complexity Low_complexity 1 31 0 816 98 8 0 chr9 78607606 78607729 -63663715 - L1PA15 LINE L1 -3 6162 6039 21888 109 13 7 chr9 78609937 78613434 -63658010 + L1P LINE L1 1472 4986 -1160 6343 90 1 2 chr9 78613438 78614691 -63656753 + L1PA8A LINE L1 4878 6131 0 818 89 9 0 chr9 78615498 78615610 -63655834 + AluSg/x SINE Alu 193 305 -4 452 224 0 22 chr9 78615624 78615758 -63655686 - L1MA9 LINE L1 -25 6287 6157 649 227 38 76 chr9 78616754 78616992 -63654452 + L1ME3A LINE L1 5924 6152 -18 1292 195 200 26 chr9 78617823 78618253 -63653191 + MLT1D LTR MaLR 1 505 0 1938 168 93 20 chr9 78618328 78618780 -63652664 - MER52A LTR ERV1 0 1755 1271 222 313 47 31 chr9 78618793 78618921 -63652523 + L2 LINE L2 2365 2494 -820 212 206 69 147 chr9 78618920 78619022 -63652422 - L2 LINE L2 -55 3258 3165 * 535 133 122 0 chr9 78619156 78619254 -63652190 - L1PA16 LINE L1 -16 6150 6041 1490 184 80 31 chr9 78619354 78619768 -63651676 + MLT1C LTR MaLR 34 467 0 198 0 0 0 chr9 78619808 78619830 -63651614 + (A)n Simple_repeat Simple_repeat 1 22 0 5165 130 86 18 chr9 78620292 78621392 -63650052 + Tigger3b DNA MER2_type 1 1198 -33 2128 108 0 10 chr9 78622305 78622641 -63648803 + AluSx SINE Alu 1 312 0 1764 167 14 0 chr9 78623186 78623467 -63647977 - AluJo SINE Alu -17 295 11 234 0 0 0 chr9 78624937 78624963 -63646481 + (CCG)n Simple_repeat Simple_repeat 1 26 0 216 206 10 69 chr9 78625143 78625245 -63646199 + C-rich Low_complexity Low_complexity 4 99 0 208 138 0 35 chr9 78625974 78626032 -63645412 + (TA)n Simple_repeat Simple_repeat 1 56 0 603 111 56 0 chr9 78626518 78626608 -63644836 + FRAM SINE Alu 69 163 -13 216 266 15 22 chr9 78627741 78627824 -63643620 + CT-rich Low_complexity Low_complexity 1 82 0 3514 182 46 13 chr9 78628032 78628879 -63642565 - L1P LINE L1 -789 5357 4483 * 4187 181 48 23 chr9 78628875 78629284 -63642160 + L1P LINE L1 3547 3945 -2201 1816 166 0 30 chr9 78629284 78629586 -63641858 + AluJb SINE Alu 1 293 -19 4187 181 48 23 chr9 78629586 78630115 -63641329 + L1P LINE L1 3945 4508 -1638 207 229 0 0 chr9 78630575 78630610 -63640834 - L2 LINE L2 -27 3245 3211 445 275 23 30 chr9 78631032 78631163 -63640281 + MIR SINE MIR 31 160 -102 212 357 124 25 chr9 78632121 78632605 -63638839 + L2 LINE L2 2445 2976 -338 1791 159 0 33 chr9 78632751 78633052 -63638392 - AluJo SINE Alu -21 291 1 1719 123 0 16 chr9 78633166 78633409 -63638035 - AluSc SINE Alu -1 308 70 349 267 113 104 chr9 78633612 78634092 -63637352 + L2 LINE L2 2824 3307 -6 2049 186 49 72 chr9 78634443 78635052 -63636392 + LTR9 LTR ERV1 18 612 0 1614 203 42 13 chr9 78635106 78635491 -63635953 - L1MD3 LINE L1 -813 7182 6787 231 280 0 0 chr9 78635484 78635534 -63635910 - L1MC3 LINE L1 -1058 6727 6678 * 623 235 11 21 chr9 78635534 78635721 -63635723 - L1MC4a LINE L1 -1276 6532 6348 4078 118 25 9 chr9 78635935 78636603 -63634841 - Tigger1 DNA MER2_type 0 2418 1740 2684 135 5 0 chr9 78636598 78637027 -63634417 - Tigger1 DNA MER2_type -818 1600 1170 * 486 210 101 8 chr9 78637030 78637149 -63634295 - FLAM_C SINE Alu -13 130 1 6276 118 10 24 chr9 78637151 78638182 -63633262 - Tigger1 DNA MER2_type -1235 1183 168 853 278 50 40 chr9 78638305 78638864 -63632580 + L1ME LINE L1 5246 5808 -313 2330 80 0 19 chr9 78638873 78639184 -63632260 + AluY SINE Alu 1 305 -6 214 182 65 13 chr9 78639259 78639336 -63632108 + (TA)n Simple_repeat Simple_repeat 2 82 0 269 185 15 0 chr9 78639420 78639485 -63631959 + (TA)n Simple_repeat Simple_repeat 1 66 0 527 197 229 16 chr9 78639981 78640164 -63631280 - L1ME LINE L1 -583 5583 5362 864 213 57 29 chr9 78640182 78640497 -63630947 + L1ME LINE L1 5026 5349 -797 487 200 17 0 chr9 78641451 78641566 -63629878 - Zaphod DNA AcHobo -2711 1320 1204 2112 185 135 0 chr9 78641714 78642157 -63629287 - MLT1D LTR MaLR -2 503 1 549 230 15 0 chr9 78642393 78642528 -63628916 - MER103 DNA DNA -17 149 13 228 306 41 31 chr9 78643155 78643253 -63628191 - L3 LINE CR1 -4 1573 1475 260 256 0 70 chr9 78643427 78643513 -63627931 - MIR SINE MIR -1 261 182 2379 65 3 3 chr9 78643513 78643807 -63627637 - AluY SINE Alu -17 294 1 1021 99 0 0 chr9 78643825 78643956 -63627488 - AluSg1 SINE Alu -178 131 1 444 262 72 44 chr9 78644053 78644241 -63627203 - MIR SINE MIR -23 239 42 18830 77 15 1 chr9 78644580 78647169 -63624275 + HERVL LTR ERVL 58 2680 -2974 2252 100 3 0 chr9 78647423 78647714 -63623730 + AluSc SINE Alu 3 294 -15 240 35 0 0 chr9 78648098 78648127 -63623317 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr9 78649557 78649580 -63621864 + AT_rich Low_complexity Low_complexity 1 23 0 35 83 0 0 chr9 78650225 78650309 -63621135 + AT_rich Low_complexity Low_complexity 1 84 0 507 244 96 0 chr9 78650712 78650847 -63620597 - MIR SINE MIR -72 190 43 273 222 281 24 chr9 78650964 78651131 -63620313 + MIR SINE MIR 40 249 -13 465 218 149 19 chr9 78651131 78651543 -63619901 - L1MEc LINE L1 -4078 2318 1833 233 167 0 0 chr9 78651533 78651581 -63619863 + L1MEc LINE L1 2255 2302 -4094 * 1608 132 42 100 chr9 78651580 78651990 -63619454 + L1MA8 LINE L1 5903 6288 -3 2364 214 35 24 chr9 78651995 78652354 -63619090 + L1MEc LINE L1 2243 2615 -3600 2234 63 53 3 chr9 78652354 78652638 -63618806 - AluY SINE Alu -13 298 1 2364 214 35 24 chr9 78652638 78652957 -63618487 + L1MEc LINE L1 2615 2929 -3286 246 319 109 14 chr9 78653085 78653223 -63618221 + L2 LINE L2 2641 2791 -523 405 294 119 0 chr9 78653302 78653428 -63618016 + L2 LINE L2 3129 3269 -3 22 0 0 0 chr9 78653435 78653457 -63617987 + AT_rich Low_complexity Low_complexity 1 22 0 586 279 78 41 chr9 78653990 78654217 -63617227 - L1MC4 LINE L1 -166 7876 7634 2031 110 23 13 chr9 78654217 78654518 -63616926 - AluSx SINE Alu -7 305 2 586 279 78 41 chr9 78654518 78654584 -63616860 - L1MC4 LINE L1 -408 7634 7572 1462 223 42 100 chr9 78654588 78655109 -63616335 - MLT1E LTR MaLR -4 589 99 977 230 80 5 chr9 78655244 78656088 -63615356 - L1MC4 LINE L1 -502 7540 6479 787 202 26 47 chr9 78657350 78657543 -63613901 + MER5A DNA MER1_type 1 189 0 243 0 0 0 chr9 78657784 78657811 -63613633 + (TA)n Simple_repeat Simple_repeat 2 28 0 2258 84 3 0 chr9 78658342 78658653 -63612791 + AluSp SINE Alu 1 312 0 23 54 0 0 chr9 78661142 78661179 -63610265 + AT_rich Low_complexity Low_complexity 1 37 0 1681 128 8 0 chr9 78661510 78661753 -63609691 - AluSq SINE Alu 0 313 69 903 259 70 39 chr9 78663369 78663782 -63607662 + MLT1J2 LTR MaLR 6 431 -19 22 0 0 0 chr9 78663829 78663851 -63607593 + AT_rich Low_complexity Low_complexity 1 22 0 752 319 61 17 chr9 78664754 78665214 -63606230 + L2 LINE L2 2554 3037 -276 537 110 0 0 chr9 78665360 78665442 -63606002 + (TGGA)n Simple_repeat Simple_repeat 3 84 0 185 128 0 26 chr9 78666652 78666691 -63604753 + (CATG)n Simple_repeat Simple_repeat 3 40 0 192 286 52 13 chr9 78667098 78667175 -63604269 - MIR SINE MIR -6 256 177 526 185 84 8 chr9 78667560 78667679 -63603765 - FLAM_C SINE Alu -15 128 1 661 227 83 61 chr9 78667764 78668042 -63603402 - MARNA DNA Mariner -160 426 143 1441 121 5 36 chr9 78668507 78668673 -63602771 + AluSg/x SINE Alu 87 246 -64 8700 53 2 8 chr9 78668673 78669581 -63601863 - MER11C LTR ERVK 0 1071 170 2332 85 0 3 chr9 78669581 78669875 -63601569 - AluY SINE Alu -18 293 1 8700 53 2 8 chr9 78669875 78670044 -63601400 - MER11C LTR ERVK -901 170 1 1441 121 5 36 chr9 78670044 78670101 -63601343 + AluSg/x SINE Alu 246 303 -7 511 284 59 30 chr9 78670176 78670412 -63601032 - MIR SINE MIR 0 262 20 219 139 0 0 chr9 78671414 78671450 -63599994 + (T)n Simple_repeat Simple_repeat 1 36 0 375 245 85 47 chr9 78671696 78671908 -63599536 + LTR16C LTR ERVL 266 485 -6 36 40 0 0 chr9 78672110 78672160 -63599284 + AT_rich Low_complexity Low_complexity 1 50 0 694 231 63 80 chr9 78672428 78672459 -63598985 - MLT1I LTR MaLR -18 391 361 2009 184 124 28 chr9 78672459 78672926 -63598518 + MLT2B2 LTR ERVL 1 512 -3 694 231 63 80 chr9 78672926 78673193 -63598251 - MLT1I LTR MaLR -48 361 98 392 231 224 8 chr9 78673284 78673418 -63598026 + MIR SINE MIR 91 253 -9 217 385 42 30 chr9 78673428 78673594 -63597850 - L3b LINE CR1 -311 1272 1105 520 264 90 14 chr9 78675113 78675257 -63596187 - L2 LINE L2 0 3272 3118 277 195 230 11 chr9 78675331 78675418 -63596026 - L2 LINE L2 -8 3305 3200 345 325 109 39 chr9 78675442 78675724 -63595720 - L2 LINE L2 -216 3056 2732 2381 75 0 0 chr9 78675724 78676016 -63595428 - AluY SINE Alu -19 292 1 345 325 109 39 chr9 78676016 78676216 -63595228 - L2 LINE L2 -540 2732 2547 909 274 9 14 chr9 78676488 78676711 -63594733 - MIR SINE MIR -8 254 33 493 291 117 17 chr9 78677681 78677980 -63593464 + MLT1J2 LTR MaLR 1 329 -121 358 331 49 22 chr9 78678254 78678438 -63593006 - MER5A DNA MER1_type 0 189 1 432 229 61 0 chr9 78678746 78678877 -63592567 - MER5C DNA MER1_type -58 266 128 28 29 0 0 chr9 78679525 78679560 -63591884 + AT_rich Low_complexity Low_complexity 1 35 0 1409 234 45 28 chr9 78679816 78680278 -63591166 - LTR38 LTR ERV1 0 556 87 1884 231 28 20 chr9 78680945 78681481 -63589963 + L1ME1 LINE L1 5618 6157 -9 2513 57 0 0 chr9 78682736 78683036 -63588408 - AluY SINE Alu -11 300 1 241 270 54 34 chr9 78683477 78683625 -63587819 + L1ME LINE L1 5648 5798 -323 22 56 0 0 chr9 78683637 78683673 -63587771 + AT_rich Low_complexity Low_complexity 1 36 0 2057 104 0 0 chr9 78686630 78686918 -63584526 - L1PA7 LINE L1 -6 6148 5861 17270 111 19 66 chr9 78686918 78691034 -63580410 - L1P LINE L1 -2298 3848 12 1546 147 26 18 chr9 78691048 78691321 -63580123 - AluJb SINE Alu -13 299 25 276 291 152 0 chr9 78691824 78691903 -63579541 + L2 LINE L2 3182 3272 0 2483 79 13 0 chr9 78691979 78692284 -63579160 - AluSx SINE Alu -3 309 1 231 333 0 0 chr9 78692372 78692432 -63579012 - L2 LINE L2 -39 3233 3174 500 339 74 41 chr9 78692476 78692989 -63578455 - L2 LINE L2 -706 2608 2079 1536 226 43 39 chr9 78693373 78693838 -63577606 - MLT1C LTR MaLR 0 467 1 474 290 93 23 chr9 78694070 78694284 -63577160 - MIR SINE MIR 0 262 34 234 0 0 0 chr9 78695285 78695311 -63576133 + (T)n Simple_repeat Simple_repeat 1 26 0 2485 70 0 0 chr9 78695436 78695752 -63575692 - L1PA7 LINE L1 -14 6140 5825 3022 251 135 2 chr9 78695754 78696682 -63574762 - L1MDa LINE L1 -5465 1075 25 526 266 107 43 chr9 78697009 78697242 -63574202 - MIR SINE MIR 0 262 15 6989 178 31 16 chr9 78698589 78699571 -63571873 - L1MCa LINE L1 -4906 1520 506 2378 75 0 33 chr9 78699571 78699877 -63571567 + AluY SINE Alu 1 296 -15 6989 178 31 16 chr9 78699877 78700380 -63571064 - L1MCa LINE L1 -5920 506 12 230 167 21 0 chr9 78700370 78700418 -63571026 - L1MB7 LINE L1 -108 6076 6028 * 3440 145 16 87 chr9 78700414 78701184 -63570260 - L1MCa LINE L1 -5194 1413 506 690 197 11 6 chr9 78701547 78701725 -63569719 + CT-rich Low_complexity Low_complexity 1 179 0 640 182 0 33 chr9 78702135 78702256 -63569188 + FLAM_A SINE Alu 1 117 -16 2174 119 10 16 chr9 78702315 78702625 -63568819 - AluSx SINE Alu -4 308 1 466 331 65 16 chr9 78702944 78703252 -63568192 - LTR16C LTR ERVL 0 491 169 264 59 0 0 chr9 78704120 78704154 -63567290 + (CA)n Simple_repeat Simple_repeat 2 35 0 189 71 107 0 chr9 78707354 78707382 -63564062 - L2 LINE L2 -16 3297 3267 234 0 0 0 chr9 78709248 78709274 -63562170 + (T)n Simple_repeat Simple_repeat 1 26 0 218 167 0 0 chr9 78712194 78712230 -63559214 + (CCCA)n Simple_repeat Simple_repeat 2 37 0 232 177 38 76 chr9 78712293 78712372 -63559072 - L2 LINE L2 -535 2779 2704 2212 141 0 0 chr9 78712653 78712958 -63558486 - AluSx SINE Alu -7 305 1 3366 158 59 64 chr9 78713071 78713175 -63558269 + L1MB4 LINE L1 5081 5184 -996 1827 162 48 3 chr9 78713175 78713465 -63557979 - AluJo SINE Alu -9 303 1 3366 158 59 64 chr9 78713465 78713951 -63557493 + L1MB4 LINE L1 5184 5690 -490 229 118 0 0 chr9 78713951 78713985 -63557459 - U2 snRNA snRNA -154 34 1 3366 158 59 64 chr9 78713985 78714446 -63556998 + L1MB4 LINE L1 5690 6152 -28 390 145 26 0 chr9 78714461 78714537 -63556907 + L1MB8 LINE L1 6095 6172 -6 2049 126 0 20 chr9 78714716 78715017 -63556427 - AluSx SINE Alu -16 296 2 234 0 0 0 chr9 78716101 78716127 -63555317 + (A)n Simple_repeat Simple_repeat 1 26 0 237 274 226 12 chr9 78717296 78717380 -63554064 - MIR SINE MIR -146 116 15 932 208 27 0 chr9 78717387 78717570 -63553874 - MER58A DNA MER1_type 0 224 37 577 143 114 0 chr9 78717609 78717714 -63553730 - AluJ SINE Alu -12 300 184 841 160 8 0 chr9 78717714 78717839 -63553605 - AluJ SINE Alu -186 126 1 355 339 186 0 chr9 78718179 78718362 -63553082 - MIR SINE MIR -29 233 17 2375 81 0 0 chr9 78718517 78718814 -63552630 - AluSc SINE Alu -12 297 1 256 265 153 37 chr9 78720374 78720563 -63550881 + MLT1K LTR MaLR 143 353 -235 22 0 0 0 chr9 78721132 78721154 -63550290 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr9 78721407 78721430 -63550014 + AT_rich Low_complexity Low_complexity 1 23 0 430 248 20 0 chr9 78722081 78722182 -63549262 + MER5A DNA MER1_type 87 189 0 294 167 74 0 chr9 78722219 78722273 -63549171 - MER5A DNA MER1_type -77 112 55 2132 97 11 0 chr9 78722907 78723186 -63548258 - AluSq SINE Alu -30 283 2 332 256 174 18 chr9 78726301 78726520 -63544924 + MIR SINE MIR 2 254 -8 233 255 111 39 chr9 78728944 78729097 -63542347 - L1ME4a LINE L1 -1 6120 5957 645 231 39 39 chr9 78729123 78729326 -63542118 + MER3 DNA MER1_type 7 209 0 383 296 90 114 chr9 78729434 78729958 -63541486 - L1ME4a LINE L1 -351 5770 5260 30 45 0 0 chr9 78731143 78731187 -63540257 + AT_rich Low_complexity Low_complexity 1 44 0 1440 196 44 6 chr9 78731377 78731698 -63539746 - MER58B DNA MER1_type -8 333 1 2207 90 0 0 chr9 78733499 78733823 -63537621 + AluSc SINE Alu 1 324 0 398 264 82 100 chr9 78735816 78736096 -63535348 + HAL1 LINE L1 804 1078 -1429 1593 268 89 54 chr9 78736175 78737431 -63534013 + HAL1 LINE L1 1112 2411 -96 36 53 0 0 chr9 78737717 78737774 -63533670 + AT_rich Low_complexity Low_complexity 1 57 0 207 254 209 36 chr9 78738519 78738629 -63532815 + MIR3 SINE MIR 1 129 -79 605 199 59 50 chr9 78740183 78740404 -63531040 + MER112 DNA MER1_type 6 228 -32 228 283 58 67 chr9 78741298 78741418 -63530026 + L2 LINE L2 3153 3271 -1 260 68 0 23 chr9 78742312 78742356 -63529088 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 524 320 6 23 chr9 78742991 78743163 -63528281 - MIR3 SINE MIR -25 183 15 2243 75 0 3 chr9 78743351 78743633 -63527811 + AluY SINE Alu 27 307 -4 180 234 0 0 chr9 78743776 78743823 -63527621 + (CA)n Simple_repeat Simple_repeat 1 47 0 310 325 95 8 chr9 78744767 78744893 -63526551 + L2 LINE L2 3098 3234 -38 220 191 0 0 chr9 78744921 78744963 -63526481 - MIR SINE MIR -49 213 172 4833 113 52 8 chr9 78745238 78746019 -63525425 + L1MA3 LINE L1 5480 6295 -10 2303 55 0 0 chr9 78746050 78746361 -63525083 + HERVL-A2 LTR ERVL 5344 5654 0 3097 79 23 11 chr9 78746361 78746804 -63524640 + MLT2A2 LTR ERVL 1 448 -5 241 301 93 27 chr9 78747077 78747260 -63524184 + MLT1J2 LTR MaLR 256 450 0 346 217 130 43 chr9 78747300 78747392 -63524052 + MIR3 SINE MIR 101 200 -8 198 351 0 0 chr9 78750268 78750325 -63521119 + MIR SINE MIR 74 130 -78 843 158 0 8 chr9 78750398 78750580 -63520864 - FLAM_C SINE Alu 0 181 1 742 159 41 0 chr9 78750592 78750737 -63520707 - L1MB5 LINE L1 0 6174 6024 5506 79 20 54 chr9 78750738 78752363 -63519081 + SVA Other Other 34 868 -520 1150 53 0 24 chr9 78752381 78752588 -63518856 + SVA Other Other 665 866 -520 6867 65 6 37 chr9 78752653 78753679 -63517765 + SVA Other Other 433 1428 0 768 153 8 8 chr9 78753863 78753987 -63517457 + FLAM_C SINE Alu 1 124 -19 240 298 39 39 chr9 78754735 78754839 -63516605 - MIR3 SINE MIR -34 174 71 2546 54 0 0 chr9 78754979 78755274 -63516170 - AluY SINE Alu -16 295 1 392 298 92 0 chr9 78755346 78755477 -63515967 + MIR3 SINE MIR 55 197 -11 4161 146 79 18 chr9 78755843 78756756 -63514688 + L1MB3 LINE L1 5205 6174 -9 957 147 69 64 chr9 78757716 78757934 -63513510 - MER20 DNA MER1_type 0 219 1 736 239 213 0 chr9 78758537 78758734 -63512710 - MIR SINE MIR -22 240 2 319 229 104 21 chr9 78758784 78758880 -63512564 + MIR3 SINE MIR 75 178 -30 184 229 0 0 chr9 78758881 78758916 -63512528 + L2 LINE L2 3264 3298 -15 1935 156 7 10 chr9 78759637 78759944 -63511500 + AluSx SINE Alu 1 306 -6 2424 66 0 7 chr9 78760183 78760484 -63510960 - AluY SINE Alu -12 299 1 602 158 253 34 chr9 78762135 78762281 -63509163 - MER45A DNA AcHobo 0 178 1 513 204 23 93 chr9 78762633 78762849 -63508595 + MER112 DNA MER1_type 26 226 -34 1447 117 12 54 chr9 78763323 78763563 -63507881 + MER30 DNA MER1_type 1 230 0 351 321 108 16 chr9 78763895 78764116 -63507328 - MIR SINE MIR -6 256 8 1752 170 3 7 chr9 78764998 78765281 -63506163 - AluJo SINE Alu -30 282 1 635 269 101 36 chr9 78765370 78765924 -63505520 - L1ME4a LINE L1 -28 6093 5504 2270 56 52 14 chr9 78765928 78766216 -63505228 - AluY SINE Alu -12 299 1 755 193 0 0 chr9 78766328 78766473 -63504971 + AluSg/x SINE Alu 168 312 0 934 196 102 4 chr9 78766505 78766730 -63504714 + L1M4 LINE L1 16 262 -6280 1430 216 54 51 chr9 78766764 78767337 -63504107 + L1M4 LINE L1 2641 3215 -3429 * 1534 224 47 24 chr9 78767313 78767737 -63503707 + L1M4 LINE L1 5043 5476 -1168 409 221 12 0 chr9 78767738 78767824 -63503620 + Tigger5 DNA MER2_type 2 88 -2235 2113 176 45 25 chr9 78767850 78768635 -63502809 + L1M4 LINE L1 5475 6274 -408 * 3735 209 58 20 chr9 78768614 78768733 -63502711 + L1MC1 LINE L1 1906 2019 -4407 252 0 0 0 chr9 78768733 78768761 -63502683 + (CA)n Simple_repeat Simple_repeat 2 29 0 3735 209 58 20 chr9 78768761 78770488 -63500956 + L1MC1 LINE L1 2019 3825 -2601 5614 152 39 12 chr9 78770518 78771932 -63499512 - L1MA5A LINE L1 -10 6287 4831 2674 211 23 18 chr9 78771940 78772599 -63498845 + L1MC1 LINE L1 3827 4488 -1938 635 25 0 0 chr9 78772630 78772710 -63498734 + L1PA2 LINE L1 6075 6154 -1 5174 164 26 33 chr9 78772757 78773832 -63497612 + L1MC1 LINE L1 5535 6602 -11 488 172 35 0 chr9 78773847 78773963 -63497481 + L1MB7 LINE L1 6060 6179 -5 613 199 8 53 chr9 78774298 78774429 -63497015 + FLAM_A SINE Alu 1 125 -8 362 283 72 14 chr9 78774429 78774567 -63496877 + L1ME3A LINE L1 2398 2543 -3603 479 274 114 7 chr9 78775189 78775547 -63495897 + L1ME3A LINE L1 5195 5590 -574 1099 228 88 47 chr9 78775549 78775993 -63495451 + MLT1C LTR MaLR 6 467 0 246 191 0 0 chr9 78775993 78776040 -63495404 + L1ME3A LINE L1 5582 5628 -542 482 229 29 29 chr9 78776044 78776184 -63495260 + L1ME3A LINE L1 6031 6170 0 308 304 131 21 chr9 78776353 78776590 -63494854 + L1ME2 LINE L1 4628 4890 -1256 2147 64 79 4 chr9 78776614 78776894 -63494550 + AluY SINE Alu 1 301 -10 1352 255 40 17 chr9 78777165 78777635 -63493809 + L1ME3A LINE L1 5457 5937 -233 294 225 93 23 chr9 78777853 78777982 -63493462 + L1ME3A LINE L1 6033 6170 0 603 276 82 44 chr9 78778011 78778266 -63493178 + L1ME2 LINE L1 4903 5181 -965 2178 94 0 3 chr9 78778266 78778578 -63492866 + AluSq SINE Alu 1 311 0 603 276 82 44 chr9 78778578 78778709 -63492735 + L1ME2 LINE L1 5181 5305 -841 301 316 63 25 chr9 78778771 78778929 -63492515 + L1ME2 LINE L1 5734 5897 -267 471 257 50 9 chr9 78779736 78779958 -63491486 + L1M4 LINE L1 5101 5331 -815 23 33 0 0 chr9 78782810 78782840 -63488604 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 78784137 78784158 -63487286 + AT_rich Low_complexity Low_complexity 1 21 0 392 271 0 0 chr9 78786606 78786691 -63484753 - MIR3 SINE MIR -13 195 111 2188 118 0 0 chr9 78787555 78787851 -63483593 - AluSx SINE Alu -16 296 1 186 133 0 0 chr9 78788561 78788591 -63482853 + (T)n Simple_repeat Simple_repeat 1 30 0 585 218 7 0 chr9 78788838 78788985 -63482459 - L1MD1 LINE L1 -14 6228 6081 712 200 17 6 chr9 78788857 78789032 -63482412 - L1MD3 LINE L1 -32 7963 7787 1784 164 68 3 chr9 78789067 78789390 -63482054 + MER2 DNA MER2_type 1 344 0 365 198 49 0 chr9 78789402 78789483 -63481961 - L1MD2 LINE L1 -221 6138 6054 237 238 0 0 chr9 78789490 78789553 -63481891 - L1MD2 LINE L1 -374 5985 5923 265 295 74 21 chr9 78789919 78790014 -63481430 + L2 LINE L2 3210 3309 -4 5462 11 19 2 chr9 78790613 78791240 -63480204 + L1PA3 LINE L1 5514 6151 -4 215 134 30 75 chr9 78792230 78792297 -63479147 + A-rich Low_complexity Low_complexity 2 65 0 2019 145 26 0 chr9 78792411 78792715 -63478729 + AluSx SINE Alu 1 312 0 37 0 0 0 chr9 78793422 78793459 -63477985 + AT_rich Low_complexity Low_complexity 1 37 0 239 288 0 0 chr9 78793542 78793601 -63477843 + L2 LINE L2 3230 3288 -25 703 188 109 14 chr9 78794901 78795039 -63476405 + FRAM SINE Alu 1 150 -26 2387 77 0 3 chr9 78795923 78796222 -63475222 - AluSg SINE Alu -12 298 1 351 386 19 0 chr9 78797247 78797405 -63474039 - L2 LINE L2 0 3272 3112 879 204 42 31 chr9 78798333 78798524 -63472920 - MER58A DNA MER1_type -31 193 1 269 26 26 0 chr9 78799384 78799422 -63472022 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 669 94 8 31 chr9 78800662 78800789 -63470655 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 754 320 24 12 chr9 78800823 78801070 -63470374 + MIR SINE MIR 13 262 0 278 347 42 0 chr9 78801407 78801502 -63469942 - L2 LINE L2 -218 3054 2956 27 49 0 0 chr9 78801841 78801882 -63469562 + AT_rich Low_complexity Low_complexity 1 41 0 361 306 95 17 chr9 78802616 78802850 -63468594 + L1MC4 LINE L1 7018 7282 -526 321 303 46 0 chr9 78802888 78803040 -63468404 + L1MC5 LINE L1 7262 7420 -541 225 271 131 36 chr9 78803077 78803298 -63468146 + L1MC4 LINE L1 7601 7842 -200 2092 114 0 46 chr9 78803412 78803736 -63467708 - AluSx SINE Alu -3 309 1 288 289 20 27 chr9 78804764 78804913 -63466531 + GA-rich Low_complexity Low_complexity 2 149 0 239 154 0 19 chr9 78807113 78807165 -63464279 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 331 324 118 29 chr9 78807737 78807907 -63463537 + L2 LINE L2 3077 3261 -11 282 179 0 0 chr9 78807914 78807970 -63463474 + GA-rich Low_complexity Low_complexity 1 56 0 226 24 98 0 chr9 78808517 78808558 -63462886 + A-rich Low_complexity Low_complexity 2 46 0 2097 144 0 6 chr9 78809236 78809548 -63461896 + AluJo SINE Alu 1 310 -2 412 296 56 84 chr9 78810370 78810583 -63460861 + MIR SINE MIR 26 232 -30 192 77 0 0 chr9 78810606 78810632 -63460812 + (A)n Simple_repeat Simple_repeat 1 26 0 186 187 133 77 chr9 78810663 78810770 -63460674 + MIR SINE MIR 72 175 -33 505 308 111 10 chr9 78811240 78811438 -63460006 + MIR SINE MIR 1 218 -44 342 67 0 0 chr9 78812243 78812288 -63459156 + (TG)n Simple_repeat Simple_repeat 1 45 0 2381 69 3 26 chr9 78813452 78813757 -63457687 - AluY SINE Alu -13 298 1 2208 110 134 11 chr9 78814007 78814388 -63457056 - MSTA LTR MaLR 0 428 1 641 251 34 22 chr9 78814740 78815007 -63456437 + MER114 LTR ERV 1 270 -378 254 200 33 17 chr9 78816322 78816382 -63455062 + MER94 DNA DNA 74 134 0 299 225 62 0 chr9 78816550 78816630 -63454814 + Charlie8 DNA MER1_type 146 230 -2187 459 289 152 14 chr9 78817122 78817333 -63454111 + MIR SINE MIR 9 248 -14 22 35 0 0 chr9 78817891 78817920 -63453524 + AT_rich Low_complexity Low_complexity 1 29 0 1814 43 0 0 chr9 78818399 78818608 -63452836 + AluY SINE Alu 103 311 0 450 276 167 6 chr9 78820194 78820350 -63451094 + MER5A DNA MER1_type 9 189 0 595 238 13 40 chr9 78820352 78820469 -63450975 - MER5B DNA MER1_type 0 178 64 1597 195 10 17 chr9 78820469 78820771 -63450673 - AluJo SINE Alu -12 300 1 595 238 13 40 chr9 78820771 78820804 -63450640 - MER5B DNA MER1_type -114 64 32 2101 201 102 22 chr9 78821045 78821356 -63450088 + Charlie7 DNA MER1_type 1581 1866 -746 234 0 0 0 chr9 78821356 78821382 -63450062 + (CA)n Simple_repeat Simple_repeat 1 26 0 2101 201 102 22 chr9 78821382 78821748 -63449696 + Charlie7 DNA MER1_type 1866 2312 -300 307 351 107 6 chr9 78823292 78823460 -63447984 + MER91A DNA MER1_type 12 196 0 2292 103 0 10 chr9 78823476 78823788 -63447656 - AluSx SINE Alu -3 309 1 589 176 37 0 chr9 78825491 78825599 -63445845 - Tigger7 DNA MER2_type -6 2581 2470 * 904 239 60 0 chr9 78825590 78825791 -63445653 - Tigger7 DNA MER2_type -509 224 12 570 242 83 58 chr9 78826087 78826327 -63445117 - MIR SINE MIR 0 262 17 444 271 100 24 chr9 78827361 78827652 -63443792 + HAL1b LINE L1 784 1096 -252 2039 109 0 7 chr9 78827798 78828081 -63443363 + AluSx SINE Alu 11 291 -21 2009 102 28 32 chr9 78828366 78828650 -63442794 - AluSx SINE Alu -11 301 19 2400 86 7 0 chr9 78828656 78828959 -63442485 - AluSp SINE Alu -8 305 1 916 101 0 0 chr9 78829116 78829235 -63442209 - AluSq/x SINE Alu -194 119 1 22 0 0 0 chr9 78829306 78829328 -63442116 + AT_rich Low_complexity Low_complexity 1 22 0 2107 111 45 0 chr9 78830865 78831154 -63440290 - AluSx SINE Alu -10 302 1 264 257 147 0 chr9 78833756 78833892 -63437552 - L2 LINE L2 -321 2992 2837 217 160 0 80 chr9 78835121 78835171 -63436273 + MIR SINE MIR 75 120 -142 2064 102 3 7 chr9 78835178 78835462 -63435982 - AluSq SINE Alu -2 311 29 747 239 54 81 chr9 78836584 78836919 -63434525 + MER102b DNA MER1_type 5 330 -11 352 167 9 93 chr9 78837309 78837417 -63434027 - MIR SINE MIR -50 212 114 440 265 28 116 chr9 78838241 78838456 -63432988 + MER91A DNA MER1_type 1 196 0 1550 132 107 4 chr9 78840215 78840458 -63430986 - AluJb SINE Alu -44 268 1 341 349 79 45 chr9 78840570 78841548 -63429896 + L2 LINE L2 2247 3263 -9 409 243 88 50 chr9 78843762 78843943 -63427501 + MIR SINE MIR 75 262 0 234 0 0 0 chr9 78844291 78844317 -63427127 + (A)n Simple_repeat Simple_repeat 1 26 0 23 78 0 0 chr9 78846368 78846419 -63425025 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr9 78847211 78847236 -63424208 + AT_rich Low_complexity Low_complexity 1 25 0 638 173 8 34 chr9 78847958 78848198 -63423246 + GA-rich Low_complexity Low_complexity 1 233 0 239 293 176 23 chr9 78848976 78849232 -63422212 + L2 LINE L2 1799 2093 -1221 1286 93 0 107 chr9 78850991 78851207 -63420237 - MER1B DNA MER1_type -71 268 76 436 169 0 14 chr9 78851389 78851460 -63419984 + MLT1D LTR MaLR 1 70 -435 2284 142 36 75 chr9 78851467 78851507 -63419937 - MSTB1 LTR MaLR -6 426 386 2244 133 48 26 chr9 78851507 78851859 -63419585 - THE1B LTR MaLR 0 364 5 12121 88 7 29 chr9 78851864 78852237 -63419207 - THE1B-int LTR MaLR 0 1580 1200 2304 84 3 29 chr9 78852237 78852548 -63418896 + AluSg SINE Alu 1 303 -7 12121 88 7 29 chr9 78852548 78853414 -63418030 - THE1B-int LTR MaLR -380 1200 317 2012 113 18 0 chr9 78853414 78853688 -63417756 + AluSp SINE Alu 2 280 -33 614 48 0 12 chr9 78853692 78853775 -63417669 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 12121 88 7 29 chr9 78853775 78854144 -63417300 - THE1B-int LTR MaLR -1266 314 1 2303 104 54 28 chr9 78854145 78854499 -63416945 - THE1B LTR MaLR -1 363 1 2284 142 36 75 chr9 78854499 78854893 -63416551 - MSTB1 LTR MaLR -49 383 1 1394 208 96 43 chr9 78854893 78855311 -63416133 + MLT1D LTR MaLR 66 505 0 392 290 37 84 chr9 78856099 78856313 -63415131 + MIR3 SINE MIR 2 205 -3 285 383 62 16 chr9 78856400 78856528 -63414916 - L2 LINE L2 -5 3267 3134 2297 100 3 7 chr9 78858681 78858991 -63412453 + AluSc SINE Alu 1 309 0 1190 123 0 0 chr9 78858996 78859151 -63412293 + AluSg/x SINE Alu 127 281 -31 23 0 0 0 chr9 78859275 78859298 -63412146 + AT_rich Low_complexity Low_complexity 1 23 0 2332 67 20 3 chr9 78860490 78860790 -63410654 - AluY SINE Alu -6 305 1 1301 247 50 12 chr9 78860866 78861283 -63410161 + L1ME2 LINE L1 5722 6154 -10 23 54 0 0 chr9 78862633 78862670 -63408774 + AT_rich Low_complexity Low_complexity 1 37 0 231 229 171 19 chr9 78862789 78862894 -63408550 - MIR3 SINE MIR -10 198 78 2347 97 7 0 chr9 78863990 78864298 -63407146 + AluSp SINE Alu 2 311 -2 1645 191 17 3 chr9 78864792 78865086 -63406358 - AluJb SINE Alu -14 298 1 335 240 263 29 chr9 78866111 78866286 -63405158 + MER113 DNA MER1_type? 1 216 -305 257 333 114 35 chr9 78866488 78866689 -63404755 + MIR SINE MIR 37 253 -9 437 223 123 95 chr9 78866766 78866977 -63404467 - MIR SINE MIR -6 256 40 200 244 22 0 chr9 78867897 78867942 -63403502 + L3b LINE CR1 1300 1345 -238 252 344 123 8 chr9 78868169 78868291 -63403153 + L2 LINE L2 3133 3268 -4 272 325 89 16 chr9 78868487 78868727 -63402717 + MIR SINE MIR 2 255 -7 2192 129 0 10 chr9 78868929 78869240 -63402204 + AluSx SINE Alu 1 308 -4 192 116 90 7 chr9 78869425 78869580 -63401864 + (TA)n Simple_repeat Simple_repeat 2 169 0 296 281 162 0 chr9 78869745 78869869 -63401575 + MIR SINE MIR 37 182 -26 4312 128 29 2 chr9 78870190 78870808 -63400636 - MER41B LTR ERV1 0 635 1 22 0 0 0 chr9 78871788 78871810 -63399634 + AT_rich Low_complexity Low_complexity 1 22 0 443 186 176 39 chr9 78872921 78873023 -63398421 - FLAM_C SINE Alu -17 116 1 2378 73 3 0 chr9 78873154 78873442 -63398002 - AluSp SINE Alu -24 289 1 26 30 0 0 chr9 78873763 78873796 -63397648 + AT_rich Low_complexity Low_complexity 1 33 0 1987 136 23 10 chr9 78874443 78874751 -63396693 - AluJb SINE Alu 0 312 1 425 204 0 88 chr9 78875584 78875721 -63395723 - Charlie1 DNA MER1_type -4 2757 2633 811 272 56 0 chr9 78875728 78875941 -63395503 - Charlie1 DNA MER1_type -2536 225 1 186 277 43 0 chr9 78875976 78876023 -63395421 + L2 LINE L2 3221 3269 -3 1854 123 0 44 chr9 78876715 78877055 -63394389 - AluSg SINE Alu 0 327 1 2057 94 35 24 chr9 78877611 78877898 -63393546 + AluSx SINE Alu 1 290 -22 276 314 29 20 chr9 78878699 78878801 -63392643 + MIR3 SINE MIR 89 191 -17 291 243 117 0 chr9 78878862 78878965 -63392479 - MIR SINE MIR -70 192 78 755 222 27 11 chr9 78880199 78880384 -63391060 + L1PB4 LINE L1 5969 6156 0 412 284 67 26 chr9 78881291 78881485 -63389959 - L1ME LINE L1 -305 5816 5615 2035 131 0 0 chr9 78881747 78882029 -63389415 - AluSx SINE Alu -30 282 1 240 250 83 19 chr9 78882309 78882417 -63389027 + L1ME4a LINE L1 5944 6058 -63 339 130 0 0 chr9 78882476 78882530 -63388914 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 232 238 48 32 chr9 78882531 78882594 -63388850 - L2 LINE L2 0 3272 3209 293 275 60 88 chr9 78884450 78884835 -63386609 + L1MC5 LINE L1 7540 7913 -48 2221 148 25 25 chr9 78885101 78885465 -63385979 - THE1B LTR MaLR 0 364 1 572 263 80 40 chr9 78885676 78885900 -63385544 + MIR SINE MIR 2 234 -28 2301 67 20 30 chr9 78885920 78886220 -63385224 - AluY SINE Alu -14 297 1 509 272 139 0 chr9 78886670 78886850 -63384594 + MIR SINE MIR 58 262 0 524 207 97 7 chr9 78886919 78887064 -63384380 - MER96B DNA MER1_type? -56 361 204 418 361 108 34 chr9 78887234 78887812 -63383632 - L2 LINE L2 -20 3293 2659 222 62 0 0 chr9 78888289 78888321 -63383123 + (CA)n Simple_repeat Simple_repeat 1 32 0 1514 168 86 0 chr9 78888341 78888609 -63382835 + AluSg SINE Alu 1 291 -19 28 61 0 0 chr9 78889115 78889164 -63382280 + AT_rich Low_complexity Low_complexity 1 49 0 2222 92 3 0 chr9 78890360 78890643 -63380801 + AluSx SINE Alu 1 284 -28 1105 95 7 0 chr9 78890495 78890643 -63380801 + AluSg/x SINE Alu 134 305 0 208 0 0 0 chr9 78890643 78890666 -63380778 + (TAAA)n Simple_repeat Simple_repeat 2 140 0 432 145 0 13 chr9 78890667 78890743 -63380701 - L1MB8 LINE L1 -58 6120 6046 2288 105 3 10 chr9 78890815 78891128 -63380316 + AluSp SINE Alu 1 311 -2 1262 132 9 55 chr9 78891180 78891399 -63380045 + MER2 DNA MER2_type 1 209 -136 495 207 25 8 chr9 78893162 78893283 -63378161 + MER94 DNA DNA 1 123 -11 1614 171 24 17 chr9 78893499 78893791 -63377653 + AluJb SINE Alu 1 294 -18 2551 44 10 0 chr9 78893888 78894185 -63377259 + AluY SINE Alu 1 300 -11 4452 105 2 3 chr9 78894824 78895461 -63375983 + L1PB2 LINE L1 5516 6151 0 249 254 32 0 chr9 78896358 78896421 -63375023 + (CATA)n Simple_repeat Simple_repeat 4 68 0 1321 209 39 29 chr9 78896512 78896819 -63374625 + AluJo SINE Alu 1 310 -2 522 305 78 30 chr9 78898719 78899049 -63372395 + L2 LINE L2 2669 3011 -302 2697 136 28 4 chr9 78899177 78899642 -63371802 - L1MA7 LINE L1 -252 6039 5564 375 236 45 0 chr9 78899644 78899754 -63371690 - L1M4 LINE L1 -3106 3040 2926 2377 105 3 0 chr9 78899754 78900060 -63371384 - AluSx SINE Alu -5 307 1 2172 112 10 7 chr9 78900570 78900875 -63370569 - AluSq SINE Alu -7 306 1 183 205 0 0 chr9 78901592 78901631 -63369813 + (TG)n Simple_repeat Simple_repeat 1 39 0 320 252 41 0 chr9 78902126 78902249 -63369195 - L1M4 LINE L1 -1462 4684 4557 180 111 0 0 chr9 78902282 78902309 -63369135 + (T)n Simple_repeat Simple_repeat 1 27 0 2163 104 17 13 chr9 78902342 78902640 -63368804 - AluSq SINE Alu -14 299 1 2211 58 12 21 chr9 78903203 78903531 -63367913 + L1P LINE L1 4202 4526 -1620 * 6942 78 13 3 chr9 78903523 78904530 -63366914 - L1P LINE L1 -2003 4143 3127 326 283 67 17 chr9 78905371 78905491 -63365953 + MIR SINE MIR 134 259 -3 2231 112 0 0 chr9 78906141 78906437 -63365007 + AluSg SINE Alu 1 296 -14 278 335 97 13 chr9 78906786 78906941 -63364503 + MIR3 SINE MIR 37 204 -4 575 283 103 30 chr9 78909486 78909719 -63361725 - MIR SINE MIR -10 252 3 1549 149 80 18 chr9 78909897 78910173 -63361271 - AluJo SINE Alu -19 293 1 2369 103 0 0 chr9 78910794 78911104 -63360340 + AluSg SINE Alu 1 310 0 413 280 110 25 chr9 78911331 78911531 -63359913 - MIR SINE MIR 0 262 46 1902 146 17 0 chr9 78912801 78913096 -63358348 + AluSx SINE Alu 1 300 -12 2078 121 10 0 chr9 78913099 78913389 -63358055 + AluSq SINE Alu 1 293 -20 212 0 0 35 chr9 78913389 78913418 -63358026 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 352 342 30 56 chr9 78914073 78914307 -63357137 + MIR SINE MIR 20 247 -15 21 0 0 0 chr9 78916753 78916774 -63354670 + AT_rich Low_complexity Low_complexity 1 21 0 1485 66 0 10 chr9 78916782 78916980 -63354464 + L1PA5 LINE L1 5956 6151 -3 1052 157 4 116 chr9 78917705 78917947 -63353497 - AluJo SINE Alu -13 299 85 194 310 0 0 chr9 78918353 78918411 -63353033 + L2 LINE L2 2988 3045 -268 434 256 8 16 chr9 78918570 78918695 -63352749 + L2 LINE L2 3189 3312 -1 1295 212 4 29 chr9 78918728 78919006 -63352438 - AluJo SINE Alu -30 282 12 331 318 71 71 chr9 78919996 78920206 -63351238 - L2 LINE L2 -6 3307 3095 1818 173 13 3 chr9 78920206 78920507 -63350937 + AluJo SINE Alu 1 304 -8 331 318 71 71 chr9 78920507 78920607 -63350837 - L2 LINE L2 -217 3096 2997 2368 89 0 16 chr9 78921121 78921435 -63350009 + AluSx SINE Alu 1 309 -3 2119 107 3 14 chr9 78921688 78921979 -63349465 - AluY SINE Alu -23 288 1 1022 101 6 30 chr9 78922921 78923090 -63348354 - L1PA13 LINE L1 -7 6156 5992 451 97 0 14 chr9 78924201 78924273 -63347171 - LTR67 LTR ERVL -2 555 485 205 253 209 11 chr9 78924812 78924903 -63346541 + MIR SINE MIR 98 206 -56 192 364 87 29 chr9 78924927 78925100 -63346344 + L3b LINE CR1 1247 1429 -154 329 317 83 49 chr9 78925146 78925351 -63346093 + L3b LINE CR1 1354 1565 -18 180 0 0 0 chr9 78925598 78925618 -63345826 + (T)n Simple_repeat Simple_repeat 1 20 0 2344 88 0 10 chr9 78925759 78926065 -63345379 - AluSp SINE Alu -5 308 6 1703 221 50 63 chr9 78926645 78926891 -63344553 - L1ME3A LINE L1 -123 6047 5799 1000 206 20 0 chr9 78926891 78927095 -63344349 + MER3 DNA MER1_type 2 209 0 1703 221 50 63 chr9 78927095 78927451 -63343993 - L1ME3A LINE L1 -371 5799 5453 535 152 161 9 chr9 78927467 78927579 -63343865 - FLAM_C SINE Alu -12 131 3 637 239 70 1 chr9 78927581 78927859 -63343585 - L1ME3A LINE L1 -687 5483 5183 403 236 174 7 chr9 78928339 78928483 -63342961 - MIR SINE MIR -48 214 47 21 0 0 0 chr9 78928597 78928618 -63342826 + AT_rich Low_complexity Low_complexity 1 21 0 316 214 0 97 chr9 78929334 78929437 -63342007 + MIR3 SINE MIR 85 177 -31 1970 140 0 13 chr9 78931279 78931586 -63339858 + AluSx SINE Alu 1 303 -9 254 327 111 13 chr9 78931692 78931845 -63339599 - MIR3 SINE MIR 0 208 41 481 304 76 37 chr9 78933164 78933295 -63338149 - L1ME4a LINE L1 -42 6079 5955 401 54 18 0 chr9 78933295 78933351 -63338093 + (TG)n Simple_repeat Simple_repeat 2 58 0 481 304 76 37 chr9 78933351 78933679 -63337765 - L1ME4a LINE L1 -166 5955 5602 2495 65 0 0 chr9 78933696 78933989 -63337455 + AluY SINE Alu 1 293 -18 377 259 0 0 chr9 78934481 78934566 -63336878 - L2 LINE L2 -9 3263 3179 2090 123 3 23 chr9 78935946 78936256 -63335188 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr9 78937154 78937176 -63334268 + AT_rich Low_complexity Low_complexity 1 22 0 2010 141 7 3 chr9 78938364 78938669 -63332775 + AluSx SINE Alu 1 306 -6 182 319 106 32 chr9 78938792 78938886 -63332558 - L2 LINE L2 -79 3193 3093 292 263 183 0 chr9 78938908 78939045 -63332399 + LTR16C LTR ERVL 69 230 -261 492 148 0 0 chr9 78939045 78939126 -63332318 + AluJ/FRAM SINE Alu 220 300 -12 527 215 166 43 chr9 78939189 78939352 -63332092 + MER5A DNA MER1_type 7 189 0 460 273 33 0 chr9 78939356 78939506 -63331938 + LTR16C LTR ERVL 280 434 -57 1829 143 25 0 chr9 78939886 78940172 -63331272 - AluJb SINE Alu -15 297 5 1040 196 65 12 chr9 78940600 78940845 -63330599 - MER68 LTR ERV1 0 562 305 585 42 0 0 chr9 78943395 78943467 -63327977 + (CATTT)n Simple_repeat Simple_repeat 4 75 0 2046 124 3 0 chr9 78943467 78943750 -63327694 - AluY SINE Alu -27 284 1 198 0 0 0 chr9 78944143 78944165 -63327279 + (CCA)n Simple_repeat Simple_repeat 3 24 0 448 333 118 25 chr9 78944982 78945388 -63326056 + L3 LINE CR1 1132 1575 -2 799 284 77 61 chr9 78946616 78947067 -63324377 + HAL1b LINE L1 91 556 -792 1902 121 106 0 chr9 78947067 78947340 -63324104 - AluSg SINE Alu -8 302 1 799 284 77 61 chr9 78947340 78947525 -63323919 + HAL1b LINE L1 556 737 -611 362 301 0 16 chr9 78948294 78948417 -63323027 + CT-rich Low_complexity Low_complexity 4 124 0 1301 249 37 9 chr9 78948813 78949139 -63322305 + HERVL40 LTR ERVL 4858 5192 -338 358 291 45 8 chr9 78950021 78950155 -63321289 + MIR SINE MIR 121 259 -3 27 0 0 0 chr9 78950197 78950224 -63321220 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr9 78950816 78950848 -63320596 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr9 78951101 78951126 -63320318 + AT_rich Low_complexity Low_complexity 1 25 0 2224 105 17 3 chr9 78951177 78951472 -63319972 + AluSq SINE Alu 1 299 -14 294 241 17 0 chr9 78951527 78951585 -63319859 + MER91 DNA MER1_type 79 137 -3 254 295 84 0 chr9 78952162 78952257 -63319187 - Charlie8 DNA MER1_type -2207 210 108 2031 122 7 0 chr9 78952265 78952544 -63318900 + AluSq SINE Alu 1 281 -32 182 0 107 0 chr9 78952545 78952573 -63318871 + A-rich Low_complexity Low_complexity 1 31 0 326 259 153 60 chr9 78952599 78952815 -63318629 + LTR33 LTR ERVL 46 281 -240 236 227 0 0 chr9 78952923 78952967 -63318477 + LTR33 LTR ERVL 478 521 0 707 257 134 45 chr9 78953095 78953701 -63317743 + L1MC5 LINE L1 7270 7929 -32 330 206 0 0 chr9 78954418 78954491 -63316953 + (CA)n Simple_repeat Simple_repeat 2 74 0 1991 157 168 11 chr9 78954620 78954990 -63316454 + MSTA LTR MaLR 1 428 0 1156 116 0 6 chr9 78954990 78955163 -63316281 + MSTA-int LTR MaLR 1 172 -1479 1972 124 3 16 chr9 78955165 78955511 -63315933 - MER4A LTR ERV1 -4 660 261 730 78 20 10 chr9 78955508 78955610 -63315834 - MER4A LTR ERV1 -561 103 1 * 3991 127 117 56 chr9 78955610 78956380 -63315064 + MSTA-int LTR MaLR 168 984 -596 191 228 38 63 chr9 78956514 78956593 -63314851 + MIR SINE MIR 81 157 -105 561 30 0 0 chr9 78957018 78957085 -63314359 + (TA)n Simple_repeat Simple_repeat 1 67 0 306 0 0 0 chr9 78957085 78957119 -63314325 + (CA)n Simple_repeat Simple_repeat 1 34 0 502 230 15 44 chr9 78957237 78957372 -63314072 - MLT1K LTR MaLR -3 585 455 5051 158 127 95 chr9 78958548 78958586 -63312858 - L1MC3 LINE L1 0 7785 7750 2477 54 20 0 chr9 78958586 78958884 -63312560 + L1PA7 LINE L1 5847 6150 -4 5051 158 127 95 chr9 78958884 78959438 -63312006 - L1MC3 LINE L1 -35 7750 7215 232 286 13 13 chr9 78959438 78959515 -63311929 - MLT1F1 LTR MaLR -456 111 35 5051 158 127 95 chr9 78959515 78960178 -63311266 - L1MC3 LINE L1 -570 7215 6411 23 0 0 0 chr9 78960189 78960212 -63311232 + AT_rich Low_complexity Low_complexity 1 23 0 2060 138 14 0 chr9 78960319 78960615 -63310829 - AluSx SINE Alu -12 300 1 1692 148 14 46 chr9 78960746 78961073 -63310371 - AluJb SINE Alu 0 325 8 338 283 61 0 chr9 78961116 78961215 -63310229 + MIR SINE MIR 35 139 -69 195 333 0 0 chr9 78961214 78961277 -63310167 - L2 LINE L2 0 3272 3210 * 306 323 113 23 chr9 78961378 78961688 -63309756 + L1ME3A LINE L1 5611 5948 -222 38024 95 8 6 chr9 78962200 78968345 -63303099 - L1PA6 LINE L1 0 6154 3 1266 279 45 5 chr9 78968649 78969047 -63302397 + LTR16A LTR ERVL 1 414 -36 324 145 32 59 chr9 78969089 78969201 -63302243 - MLT1I LTR MaLR 0 549 317 1795 152 25 0 chr9 78969386 78969686 -63301758 + AluSx SINE Alu 1 307 0 299 245 39 39 chr9 78969687 78969789 -63301655 - MLT1I LTR MaLR -352 197 96 2212 125 0 3 chr9 78972107 78972419 -63299025 + AluSx SINE Alu 1 311 -1 5439 148 41 30 chr9 78972419 78973399 -63298045 - L1MC2 LINE L1 -164 6180 5203 2209 123 3 3 chr9 78973399 78973709 -63297735 - AluSx SINE Alu -2 310 1 5439 148 41 30 chr9 78973709 78973860 -63297584 - L1MC2 LINE L1 -1141 5203 5055 493 149 53 0 chr9 78973870 78973964 -63297480 - L1MB3 LINE L1 -3 6180 6082 1419 71 22 0 chr9 78973983 78974157 -63297287 - AluSg/x SINE Alu -3 306 126 2243 84 7 7 chr9 78974157 78974455 -63296989 - AluSp SINE Alu -15 298 1 2672 17 26 13 chr9 78974467 78974769 -63296675 - SVA Other Other 0 1386 1081 252 323 0 24 chr9 78975046 78975170 -63296274 + GA-rich Low_complexity Low_complexity 4 124 0 225 276 0 0 chr9 78975599 78975657 -63295787 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 354 250 60 0 chr9 78975905 78975989 -63295455 - HERVL40 LTR ERVL -504 5026 4938 397 232 56 24 chr9 78976184 78976309 -63295135 - LTR16C LTR ERVL 0 491 363 726 86 0 0 chr9 78976398 78976491 -63294953 + L1PA4 LINE L1 4 96 -6050 38759 45 5 0 chr9 78976491 78980663 -63290781 + L1PA4 LINE L1 623 4828 -1327 288 0 0 0 chr9 78980663 78980695 -63290749 + (CAGAA)n Simple_repeat Simple_repeat 3 34 0 38759 45 5 0 chr9 78980695 78982028 -63289416 + L1PA4 LINE L1 4828 6153 -2 1360 153 60 43 chr9 78982047 78982073 -63289371 - L1MA8 LINE L1 -10 6281 6257 2312 104 0 0 chr9 78982073 78982371 -63289073 + AluSq SINE Alu 1 298 -15 1360 153 60 43 chr9 78982371 78982626 -63288818 - L1MA8 LINE L1 -34 6257 5995 619 252 122 41 chr9 78982626 78982872 -63288572 - LTR16C LTR ERVL -176 315 50 1084 168 94 159 chr9 78982922 78983338 -63288106 + MSTD LTR MaLR 1 389 -7 670 251 40 17 chr9 78983631 78983806 -63287638 + MIR SINE MIR 31 209 -53 210 37 0 0 chr9 78984138 78984165 -63287279 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1781 143 69 8 chr9 78984204 78984521 -63286923 + THE1C LTR MaLR 1 394 -34 22995 100 9 12 chr9 78984521 78987822 -63283622 + L1PA6 LINE L1 19 3309 -2837 11461 57 37 1 chr9 78987822 78989957 -63281487 + L1PA6 LINE L1 3955 6154 0 421 89 18 0 chr9 78989960 78990016 -63281428 + THE1C LTR MaLR 319 375 0 435 200 0 0 chr9 78990332 78990412 -63281032 - MER116 DNA Mariner 0 80 1 197 325 60 0 chr9 78990646 78990729 -63280715 - MIR3 SINE MIR -32 176 89 376 257 209 29 chr9 78991028 78991234 -63280210 + MIR SINE MIR 20 262 0 277 240 138 36 chr9 78992386 78992582 -63278862 - L1ME4a LINE L1 -4 6117 5902 2133 139 0 0 chr9 78992644 78992939 -63278505 + AluSx SINE Alu 1 295 -17 956 227 66 66 chr9 78993660 78994174 -63277270 + MLT1E LTR MaLR 8 592 -1 747 271 21 0 chr9 78994216 78994408 -63277036 + MLT1G LTR MaLR 12 207 -383 1564 183 55 28 chr9 78994408 78994697 -63276747 + AluJb SINE Alu 1 297 -15 492 153 0 0 chr9 78994724 78994809 -63276635 + GA-rich Low_complexity Low_complexity 4 88 0 913 213 166 15 chr9 78994814 78995092 -63276352 + MLT1G LTR MaLR 197 480 -50 1679 51 0 5 chr9 78995227 78995443 -63276001 - L1PA4 LINE L1 -1 6154 5940 23 0 0 0 chr9 78995501 78995524 -63275920 + AT_rich Low_complexity Low_complexity 1 23 0 680 238 153 0 chr9 78995661 78995850 -63275594 + MER58A DNA MER1_type 1 218 -6 432 280 210 43 chr9 78996143 78996257 -63275187 + L1ME4a LINE L1 2114 2208 -3938 1962 110 60 0 chr9 78996257 78996538 -63274906 + AluSg SINE Alu 1 298 -12 432 280 210 43 chr9 78996538 78996733 -63274711 + L1ME4a LINE L1 2208 2369 -3777 2786 165 53 17 chr9 78996733 78997314 -63274130 + MER7C DNA MER2_type 1 602 0 432 280 210 43 chr9 78997314 78997884 -63273560 + L1ME4a LINE L1 2369 3141 -3005 999 185 104 30 chr9 78997888 78998186 -63273258 + L1ME4a LINE L1 4859 5178 -968 2156 104 13 3 chr9 78998318 78998625 -63272819 + AluY SINE Alu 1 310 -1 315 71 0 0 chr9 78998856 78998898 -63272546 + (TTATG)n Simple_repeat Simple_repeat 1 42 0 638 275 35 15 chr9 78999057 78999257 -63272187 + MER63A DNA MER1_type 7 210 0 250 210 80 0 chr9 78999715 78999815 -63271629 + L1P LINE L1 5318 5425 -726 368 330 19 22 chr9 78999892 79000216 -63271228 + L1ME4a LINE L1 5555 5877 -244 28 61 0 0 chr9 79000309 79000358 -63271086 + AT_rich Low_complexity Low_complexity 1 49 0 2343 103 0 3 chr9 79001555 79001866 -63269578 + AluSx SINE Alu 1 310 -2 1826 143 86 0 chr9 79002960 79003239 -63268205 - AluJb SINE Alu -8 304 2 286 229 16 0 chr9 79004214 79004275 -63267169 - MIR3 SINE MIR -15 193 132 264 297 22 11 chr9 79005822 79005913 -63265531 + (TA)n Simple_repeat Simple_repeat 1 92 0 217 154 128 0 chr9 79006694 79006733 -63264711 + L2 LINE L2 3258 3301 -12 479 264 9 0 chr9 79009287 79009393 -63262051 - L2 LINE L2 0 3313 3207 1534 131 0 0 chr9 79009492 79009714 -63261730 + AluSp SINE Alu 79 300 -13 26 0 0 0 chr9 79010249 79010275 -63261169 + AT_rich Low_complexity Low_complexity 1 26 0 343 36 0 36 chr9 79012817 79012872 -63258572 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr9 79012874 79012896 -63258548 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr9 79012939 79012967 -63258477 + GC_rich Low_complexity Low_complexity 1 28 0 309 310 90 95 chr9 79013192 79013533 -63257911 + L1M2 LINE L1 504 845 -6004 189 0 0 0 chr9 79013533 79013554 -63257890 + (CCG)n Simple_repeat Simple_repeat 2 22 0 309 310 90 95 chr9 79013554 79013764 -63257680 + L1M2 LINE L1 845 1054 -5795 225 94 0 0 chr9 79013764 79013796 -63257648 + (CCCCCG)n Simple_repeat Simple_repeat 5 36 0 309 310 90 95 chr9 79013796 79013865 -63257579 + L1M2 LINE L1 1054 1122 -5727 224 300 0 12 chr9 79013908 79013988 -63257456 + G-rich Low_complexity Low_complexity 6 84 0 288 234 13 13 chr9 79014114 79014191 -63257253 - L1ME LINE L1 -467 5697 5621 872 150 23 0 chr9 79016514 79016647 -63254797 - FLAM_C SINE Alu -6 137 2 1894 134 3 62 chr9 79017065 79017386 -63254058 + AluSx SINE Alu 1 302 -10 355 286 34 25 chr9 79018168 79018287 -63253157 - MIR3 SINE MIR -1 207 88 7515 29 3 0 chr9 79018975 79020179 -63251265 + L1PA3 LINE L1 4946 6152 -3 24 53 0 0 chr9 79020363 79020401 -63251043 + AT_rich Low_complexity Low_complexity 1 38 0 1441 163 126 18 chr9 79020497 79020842 -63250602 + MLT2D LTR ERVL 3 534 -20 465 307 11 40 chr9 79020935 79021111 -63250333 - MIR SINE MIR -85 177 7 261 265 176 52 chr9 79021251 79021387 -63250057 - MIR3 SINE MIR -41 167 15 1349 174 18 0 chr9 79022630 79022854 -63248590 + AluJb SINE Alu 85 312 0 462 36 0 0 chr9 79022854 79022910 -63248534 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 1844 155 127 41 chr9 79023393 79023622 -63247822 - MSTA LTR MaLR 0 428 220 2246 129 0 3 chr9 79023622 79023933 -63247511 - AluSg SINE Alu 0 310 1 1844 155 127 41 chr9 79023933 79024097 -63247347 - MSTA LTR MaLR -208 220 1 263 290 169 16 chr9 79024336 79024460 -63246984 + MIR SINE MIR 119 261 -1 466 337 29 37 chr9 79025083 79025329 -63246115 - MIR SINE MIR 0 262 19 182 352 9 28 chr9 79025920 79026028 -63245416 - MIR SINE MIR -20 242 137 * 216 273 23 57 chr9 79026015 79026103 -63245341 - L2 LINE L2 0 3313 3229 315 315 9 45 chr9 79026154 79026265 -63245179 - MIR3 SINE MIR -49 159 53 417 316 165 22 chr9 79026695 79027100 -63244344 - MLT1K LTR MaLR -24 564 102 2285 65 4 0 chr9 79027198 79027503 -63243941 + AluSc SINE Alu 1 306 0 310 151 19 179 chr9 79027618 79027724 -63243720 + MER91C DNA MER1_type 34 122 -18 2121 84 32 3 chr9 79029484 79029769 -63241675 - AluSc SINE Alu -4 305 13 576 168 93 0 chr9 79029778 79029939 -63241505 - L1MC3 LINE L1 0 7785 7610 690 237 53 6 chr9 79030131 79030300 -63241144 - MIR SINE MIR -5 257 81 1563 176 22 89 chr9 79030440 79030689 -63240755 - MLT1B LTR MaLR 0 390 179 2393 99 0 0 chr9 79030689 79030993 -63240451 + AluSg SINE Alu 1 304 -6 1563 176 22 89 chr9 79030993 79031159 -63240285 - MLT1B LTR MaLR -211 179 3 183 42 0 0 chr9 79031236 79031260 -63240184 + (TTG)n Simple_repeat Simple_repeat 2 25 0 258 86 0 0 chr9 79031264 79031299 -63240145 - AluJo SINE Alu -12 290 256 896 200 6 12 chr9 79031303 79031463 -63239981 - AluJo SINE Alu -153 159 1 2177 112 0 7 chr9 79031717 79032013 -63239431 + AluSx SINE Alu 3 296 -16 354 91 0 0 chr9 79032272 79032327 -63239117 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 207 286 0 0 chr9 79034113 79034162 -63237282 + (CATA)n Simple_repeat Simple_repeat 1 49 0 2093 118 0 0 chr9 79034458 79034764 -63236680 - AluSx SINE Alu 0 307 2 311 281 112 104 chr9 79035105 79035461 -63235983 + L1M2 LINE L1 584 942 -5907 196 26 26 53 chr9 79035815 79035853 -63235591 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 200 250 80 50 chr9 79036886 79036986 -63234458 + L2 LINE L2 3170 3272 0 323 308 30 75 chr9 79037281 79037414 -63234030 - L2 LINE L2 -1 3271 3145 333 313 149 20 chr9 79037950 79038151 -63233293 + L2 LINE L2 3045 3271 -1 185 324 176 0 chr9 79038176 79038284 -63233160 - L2 LINE L2 -10 3262 3136 563 224 17 9 chr9 79039066 79039182 -63232262 + L2 LINE L2 3196 3312 -1 780 184 63 45 chr9 79040005 79040079 -63231365 + MER96B DNA MER1_type? 191 262 -155 1702 168 34 0 chr9 79040079 79040371 -63231073 + AluJb SINE Alu 1 302 -10 780 184 63 45 chr9 79040371 79040519 -63230925 + MER96B DNA MER1_type? 262 417 0 1703 179 16 23 chr9 79041051 79041358 -63230086 + AluJb SINE Alu 1 305 -7 680 204 22 39 chr9 79041594 79041775 -63229669 - MER5B DNA MER1_type 0 178 1 295 239 136 13 chr9 79042140 79042295 -63229149 - L1MC4a LINE L1 -1876 5932 5759 534 182 0 11 chr9 79042325 79042413 -63229031 - FRAM SINE Alu -28 148 62 1070 262 39 3 chr9 79042523 79042859 -63228585 - L1ME4a LINE L1 -266 5855 5508 2361 93 0 0 chr9 79044632 79044932 -63226512 + AluY SINE Alu 1 300 -11 2076 117 0 23 chr9 79045346 79045645 -63225799 - AluSx SINE Alu -20 292 1 341 268 172 66 chr9 79046057 79046393 -63225051 - L1ME4a LINE L1 -4 6117 5731 2279 79 27 0 chr9 79046393 79046685 -63224759 - AluSp SINE Alu -9 304 5 341 268 172 66 chr9 79046685 79046744 -63224700 - L1ME4a LINE L1 -390 5731 5680 1502 203 10 14 chr9 79046744 79047035 -63224409 - AluJb SINE Alu -22 290 1 863 249 111 37 chr9 79047810 79048188 -63223256 - MLT1I LTR MaLR -1 408 3 894 276 71 35 chr9 79050335 79050940 -63220504 + L1ME4a LINE L1 5492 6118 -3 2159 118 0 0 chr9 79050951 79051247 -63220197 - AluSx SINE Alu -16 296 1 349 306 167 10 chr9 79051638 79052064 -63219380 + L1ME3A LINE L1 5374 5867 -303 2402 87 0 0 chr9 79052104 79052403 -63219041 - AluSg SINE Alu -11 299 1 1104 213 86 38 chr9 79052544 79052783 -63218661 + L1ME LINE L1 4904 5130 -1036 2164 138 0 28 chr9 79052783 79053103 -63218341 + AluSx SINE Alu 1 311 -1 1104 213 86 38 chr9 79053103 79053480 -63217964 + L1ME LINE L1 5130 5561 -605 252 280 65 9 chr9 79053486 79053593 -63217851 - LTR16C LTR ERVL -376 115 3 206 175 0 25 chr9 79053960 79054000 -63217444 + GA-rich Low_complexity Low_complexity 2 40 0 180 0 0 0 chr9 79054252 79054272 -63217172 + (CTATT)n Simple_repeat Simple_repeat 3 22 0 1045 205 65 65 chr9 79054387 79054440 -63217004 - L1ME2 LINE L1 -5 6161 6109 2153 91 52 0 chr9 79054440 79054727 -63216717 + AluSp SINE Alu 1 302 -11 1045 205 65 65 chr9 79054727 79055043 -63216401 - L1ME2 LINE L1 -56 6110 5792 233 265 15 0 chr9 79055103 79055171 -63216273 - Charlie8 DNA MER1_type -8 2409 2341 775 202 107 65 chr9 79055319 79055581 -63215863 - Charlie8 DNA MER1_type -2144 273 1 226 267 214 30 chr9 79055841 79055972 -63215472 - MER5B DNA MER1_type -23 155 1 26 50 0 0 chr9 79056165 79056205 -63215239 + AT_rich Low_complexity Low_complexity 1 40 0 2288 108 3 6 chr9 79056292 79056606 -63214838 - AluSq SINE Alu 0 313 1 2534 269 123 20 chr9 79056728 79057936 -63213508 + L2 LINE L2 1970 3308 -5 2792 255 82 40 chr9 79059414 79060067 -63211377 + L2 LINE L2 1992 2616 -697 940 164 49 16 chr9 79060067 79060250 -63211194 + MER5A DNA MER1_type 1 189 0 2792 255 82 40 chr9 79060250 79060897 -63210547 + L2 LINE L2 2616 3313 0 317 155 0 35 chr9 79060926 79060984 -63210460 - MARNA DNA Mariner -106 480 425 647 184 7 59 chr9 79060984 79061136 -63210308 - L2 LINE L2 -659 2655 2512 22 0 0 0 chr9 79061197 79061219 -63210225 + AT_rich Low_complexity Low_complexity 1 22 0 447 248 106 14 chr9 79061397 79061538 -63209906 - MIR SINE MIR -73 189 36 403 276 211 20 chr9 79062258 79062457 -63208987 - MIR SINE MIR -6 256 20 206 244 0 0 chr9 79062561 79062602 -63208842 + L2 LINE L2 3256 3296 -17 288 355 8 0 chr9 79062606 79062730 -63208714 + CT-rich Low_complexity Low_complexity 1 125 0 541 272 61 30 chr9 79062796 79063190 -63208254 + L1MC4a LINE L1 4437 4842 -1304 1319 156 5 0 chr9 79063223 79063434 -63208010 + AluJb SINE Alu 95 306 -6 531 264 87 66 chr9 79063768 79064381 -63207063 + L1MC4a LINE L1 5258 5803 -359 335 269 72 83 chr9 79065420 79065613 -63205831 + MIR3 SINE MIR 17 207 -1 186 103 0 0 chr9 79065649 79065678 -63205766 + (CAA)n Simple_repeat Simple_repeat 1 29 0 2119 139 0 0 chr9 79065707 79066009 -63205435 + AluJb SINE Alu 1 302 -10 656 309 62 0 chr9 79066009 79066219 -63205225 - MIR SINE MIR -22 240 18 2624 56 0 0 chr9 79067844 79068148 -63203296 + AluY SINE Alu 1 304 -7 423 307 110 20 chr9 79068205 79068377 -63203067 - MIR3 SINE MIR -9 199 16 288 301 154 15 chr9 79068993 79069129 -63202315 + MIR SINE MIR 8 162 -100 439 324 87 45 chr9 79069136 79069394 -63202050 + L2 LINE L2 2716 2962 -351 1929 132 12 47 chr9 79069394 79069713 -63201731 - AluSx SINE Alu -4 308 1 439 324 87 45 chr9 79069713 79069975 -63201469 + L2 LINE L2 2962 3249 -64 498 214 34 87 chr9 79070030 79070122 -63201322 + L1M4 LINE L1 3671 3766 -2380 22269 38 2 1 chr9 79070122 79072338 -63199106 + L1PA4 LINE L1 2583 4821 -1334 267 31 0 0 chr9 79072338 79072370 -63199074 + (CAGAA)n Simple_repeat Simple_repeat 3 34 0 22269 38 2 1 chr9 79072370 79073706 -63197738 + L1PA4 LINE L1 4821 6154 -1 498 214 34 87 chr9 79073706 79073819 -63197625 + L1M4 LINE L1 3766 3865 -2281 2133 140 47 19 chr9 79073886 79074251 -63197193 - THE1C LTR MaLR 0 375 1 349 322 48 29 chr9 79074449 79074657 -63196787 - L3 LINE CR1 -188 1389 1178 527 249 72 48 chr9 79074758 79075092 -63196352 - L1MC4 LINE L1 -133 7909 7568 1770 177 23 3 chr9 79075104 79075404 -63196040 - AluSx SINE Alu -6 306 1 821 156 0 15 chr9 79075674 79075809 -63195635 + FLAM_A SINE Alu 1 133 0 6041 59 133 65 chr9 79076086 79077180 -63194264 + MER11A LTR ERVK 1 1266 0 2007 128 44 22 chr9 79078685 79079052 -63192392 + THE1C LTR MaLR 1 375 0 1017 272 27 10 chr9 79079052 79079337 -63192107 - MLT1I LTR MaLR -16 393 101 241 260 0 39 chr9 79080240 79080344 -63191100 - LTR67 LTR ERVL 0 557 458 2164 133 5 60 chr9 79080736 79080831 -63190613 - MLT1B LTR MaLR 0 390 291 1613 169 132 60 chr9 79080831 79081166 -63190278 - MSTB1 LTR MaLR 0 432 123 2208 119 0 16 chr9 79081166 79081478 -63189966 - AluSx SINE Alu -5 307 1 1786 186 3 3 chr9 79081481 79081777 -63189667 - AluJo SINE Alu -10 302 7 1613 169 132 60 chr9 79081777 79081840 -63189604 - MSTB1 LTR MaLR -310 122 1 2164 133 5 60 chr9 79081840 79082157 -63189287 - MLT1B LTR MaLR -99 291 1 1052 244 84 36 chr9 79082157 79082604 -63188840 - MLT1G LTR MaLR -11 579 67 1149 91 0 0 chr9 79083169 79083312 -63188132 + AluSq SINE Alu 148 290 -23 198 0 0 0 chr9 79083481 79083503 -63187941 + (A)n Simple_repeat Simple_repeat 1 22 0 964 268 73 30 chr9 79083631 79084001 -63187443 - MLT1I LTR MaLR -23 386 1 207 0 0 0 chr9 79084102 79084125 -63187319 + (T)n Simple_repeat Simple_repeat 1 23 0 2854 227 66 33 chr9 79085591 79086253 -63185191 - L1ME1 LINE L1 -28 6138 5499 2437 67 3 0 chr9 79086253 79086552 -63184892 + AluY SINE Alu 1 300 -11 2854 227 66 33 chr9 79086552 79086972 -63184472 - L1ME1 LINE L1 -667 5499 5015 2128 140 7 3 chr9 79086972 79087280 -63184164 - AluSx SINE Alu -3 309 1 2854 227 66 33 chr9 79087280 79087497 -63183947 - L1ME1 LINE L1 -1151 5015 4806 330 153 0 0 chr9 79087503 79087562 -63183882 + (TAGG)n Simple_repeat Simple_repeat 1 59 0 1179 207 53 0 chr9 79087665 79087988 -63183456 - L1ME1 LINE L1 -1350 4796 4457 503 249 73 0 chr9 79087984 79088161 -63183283 - L1ME1 LINE L1 -2764 3382 3193 * 405 237 19 0 chr9 79088154 79088310 -63183134 - L1MEc LINE L1 -1687 4528 4370 * 6089 107 4 7 chr9 79088347 79090314 -63181130 + L1PA14 LINE L1 4193 6160 -1 51 17 0 0 chr9 79090319 79090377 -63181067 + AT_rich Low_complexity Low_complexity 1 58 0 5402 253 57 6 chr9 79090469 79092738 -63178706 - L1MEc LINE L1 -1899 4316 1974 1492 295 76 44 chr9 79092739 79093392 -63178052 - L1MEc LINE L1 -4709 1687 1056 2192 126 7 0 chr9 79093392 79093693 -63177751 - AluSp SINE Alu -10 303 1 1492 295 76 44 chr9 79093693 79094639 -63176805 - L1MEc LINE L1 -5340 1056 37 2505 63 0 0 chr9 79094766 79095067 -63176377 - AluY SINE Alu -10 301 1 207 0 0 0 chr9 79096740 79096763 -63174681 + (CA)n Simple_repeat Simple_repeat 2 24 0 2166 274 147 35 chr9 79096983 79098431 -63173013 + HAL1 LINE L1 1 1611 -896 741 256 32 90 chr9 79098437 79098905 -63172539 + HAL1 LINE L1 1853 2293 -214 25 0 0 0 chr9 79099050 79099075 -63172369 + AT_rich Low_complexity Low_complexity 1 25 0 2842 53 3 8 chr9 79099415 79099775 -63171669 - L1PA6 LINE L1 -2 6152 5795 976 114 0 158 chr9 79099849 79100077 -63171367 + 7SK RNA RNA 1 192 -1 2164 109 0 30 chr9 79100102 79100406 -63171038 - AluSx SINE Alu -17 295 1 195 42 0 0 chr9 79100545 79100569 -63170875 + (TTG)n Simple_repeat Simple_repeat 2 25 0 283 292 138 8 chr9 79100635 79100765 -63170679 + MIR SINE MIR 92 238 -24 190 370 0 0 chr9 79100876 79100949 -63170495 - L3b LINE CR1 -320 1263 1191 542 249 90 41 chr9 79101093 79101413 -63170031 + MLT1L LTR MaLR 110 595 -20 192 125 0 0 chr9 79101682 79101714 -63169730 + (A)n Simple_repeat Simple_repeat 1 32 0 257 240 29 48 chr9 79101721 79101825 -63169619 - L1ME4a LINE L1 -51 6070 5969 216 0 0 0 chr9 79102166 79102190 -63169254 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2102 114 0 4 chr9 79102190 79102471 -63168973 - AluSx SINE Alu -32 280 1 21 36 0 0 chr9 79103416 79103444 -63168000 + AT_rich Low_complexity Low_complexity 1 28 0 306 200 35 47 chr9 79103646 79103731 -63167713 + L1ME4a LINE L1 3095 3178 -2968 518 344 31 45 chr9 79105348 79105622 -63165822 + L1ME4a LINE L1 3191 3458 -2688 2184 122 6 3 chr9 79105622 79105934 -63165510 + AluSq SINE Alu 1 313 0 518 344 31 45 chr9 79105934 79106080 -63165364 + L1ME4a LINE L1 3458 3605 -2541 256 277 73 79 chr9 79106100 79106443 -63165001 + L1ME4a LINE L1 3625 3965 -2181 307 325 70 3 chr9 79106478 79106727 -63164717 - LTR16A LTR ERVL -21 429 102 434 266 104 62 chr9 79106851 79107110 -63164334 + L1ME4a LINE L1 4100 4369 -1777 478 341 97 69 chr9 79107153 79107690 -63163754 + L1MEd LINE L1 12 580 -5539 2161 126 3 0 chr9 79107690 79107992 -63163452 + AluSq SINE Alu 1 303 -10 478 341 97 69 chr9 79107992 79108249 -63163195 + L1MEd LINE L1 580 828 -5291 1447 265 74 29 chr9 79108295 79108876 -63162568 + MLT1L LTR MaLR 7 613 -2 562 280 57 20 chr9 79108938 79109288 -63162156 + L1MEd LINE L1 895 1257 -4862 389 305 80 64 chr9 79109558 79110375 -63161069 + L1MEc LINE L1 45 874 -5522 2741 118 5 7 chr9 79110387 79110820 -63160624 - MER9 LTR ERVK 0 511 80 186 43 0 0 chr9 79110861 79110884 -63160560 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5589 138 24 12 chr9 79110886 79110906 -63160538 - L1MA7 LINE L1 -7 6284 6266 288 0 0 0 chr9 79110906 79110938 -63160506 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 5589 138 24 12 chr9 79110938 79111935 -63159509 - L1MA7 LINE L1 -25 6266 5255 258 245 43 0 chr9 79111939 79112033 -63159411 - L1M4 LINE L1 -945 5201 5104 307 264 31 82 chr9 79112405 79112564 -63158880 + MLT1J LTR MaLR 4 192 -296 226 279 97 19 chr9 79112730 79112988 -63158456 + L1ME4a LINE L1 4938 5215 -931 340 295 116 21 chr9 79113231 79113421 -63158023 + L1ME4a LINE L1 5732 5939 -182 4780 136 31 13 chr9 79114551 79115708 -63155736 - HERVH LTR ERV1 -6650 1063 1 2687 91 98 2 chr9 79115710 79116119 -63155325 - LTR7 LTR ERV1 -2 448 1 258 251 106 30 chr9 79116804 79116973 -63154471 + L1ME3A LINE L1 4995 5150 -1014 1898 155 0 35 chr9 79116973 79117289 -63154155 + AluJb SINE Alu 1 305 -7 258 251 106 30 chr9 79117289 79117527 -63153917 + L1ME3A LINE L1 5150 5429 -735 1592 266 128 22 chr9 79117570 79118030 -63153414 + L1ME3A LINE L1 5410 5965 -205 2021 248 67 23 chr9 79118030 79118594 -63152850 - MLT1E LTR MaLR -4 589 1 1592 266 128 22 chr9 79118594 79118807 -63152637 + L1ME3A LINE L1 5965 6154 -16 1686 172 0 56 chr9 79118840 79119160 -63152284 + AluJo SINE Alu 11 312 0 1193 107 0 0 chr9 79119184 79119333 -63152111 + AluSx SINE Alu 35 183 -129 273 260 48 25 chr9 79119540 79119562 -63151882 + MIR SINE MIR 19 39 -169 2301 110 48 20 chr9 79119562 79119916 -63151528 + THE1B LTR MaLR 1 364 0 273 260 48 25 chr9 79119916 79119974 -63151470 + MIR SINE MIR 39 95 -113 5680 136 64 39 chr9 79123564 79124201 -63147243 + Tigger3b DNA MER2_type 1 620 -2408 2187 116 7 3 chr9 79124201 79124503 -63146941 - AluSx SINE Alu -9 303 1 2445 52 0 29 chr9 79124511 79124817 -63146627 - AluY SINE Alu -14 297 1 5680 136 64 39 chr9 79124817 79125359 -63146085 + Tigger3b DNA MER2_type 626 1219 -12 260 321 75 19 chr9 79125400 79125559 -63145885 + MLT1G LTR MaLR 7 174 -421 634 216 0 29 chr9 79125560 79125699 -63145745 - MLT1C LTR MaLR 0 467 333 1655 185 18 29 chr9 79125701 79126084 -63145360 - MLT1C LTR MaLR -48 419 41 743 280 208 11 chr9 79126074 79126453 -63144991 + MLT1G LTR MaLR 137 590 0 * 327 273 109 16 chr9 79126705 79126833 -63144611 + MIR SINE MIR 28 167 -95 637 113 33 47 chr9 79128295 79128445 -63142999 + MER53 DNA DNA 1 148 -41 288 0 0 0 chr9 79128828 79128860 -63142584 + (T)n Simple_repeat Simple_repeat 1 32 0 1189 134 52 60 chr9 79131019 79131251 -63140193 - MER30 DNA MER1_type 0 230 1 2026 33 0 0 chr9 79131592 79131833 -63139611 + L1PA4 LINE L1 5912 6152 -3 481 229 33 16 chr9 79132363 79132485 -63138959 - MER5B DNA MER1_type -54 124 1 444 168 236 0 chr9 79133175 79133366 -63138078 + Charlie4a DNA MER1_type 197 432 -76 29885 112 10 53 chr9 79134394 79135886 -63135558 - L1PA7 LINE L1 0 6154 4600 2397 87 0 7 chr9 79135886 79136195 -63135249 + AluY SINE Alu 1 307 -4 29885 112 10 53 chr9 79136195 79141137 -63130307 - L1PA7 LINE L1 -1554 4600 1 307 298 99 0 chr9 79141834 79141955 -63129489 - MER5A DNA MER1_type -56 133 1 339 175 0 0 chr9 79142120 79142183 -63129261 - MER46C DNA MER2_type -1 337 275 240 163 0 20 chr9 79142403 79142452 -63128992 + Alu SINE Alu 245 292 -9 2042 141 3 7 chr9 79142452 79142756 -63128688 + AluSq SINE Alu 1 303 -10 406 312 146 62 chr9 79142797 79143262 -63128182 - HAL1 LINE L1 -741 1766 1263 270 288 34 0 chr9 79143295 79143413 -63128031 - L1MEd LINE L1 -5018 1101 980 200 268 0 0 chr9 79144257 79144313 -63127131 + (CATTT)n Simple_repeat Simple_repeat 5 60 0 291 272 24 107 chr9 79144334 79144503 -63126941 + MIR SINE MIR 16 170 -92 400 282 71 38 chr9 79144524 79144935 -63126509 - MLT1G1 LTR MaLR -15 580 113 367 273 27 0 chr9 79144973 79145083 -63126361 - LTR16C LTR ERVL -366 125 13 360 0 0 0 chr9 79145181 79145221 -63126223 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 883 250 22 40 chr9 79145283 79145511 -63125933 + MER58A DNA MER1_type 1 224 0 207 193 35 18 chr9 79145548 79145605 -63125839 + T-rich Low_complexity Low_complexity 2 59 0 769 295 41 54 chr9 79145897 79146362 -63125082 - LTR67 LTR ERVL -1 556 98 314 267 9 35 chr9 79146741 79146857 -63124587 - L2 LINE L2 -1605 1709 1597 1752 156 45 27 chr9 79146962 79147296 -63124148 - THE1B LTR MaLR 0 364 25 1010 140 14 56 chr9 79147562 79147776 -63123668 - MER20 DNA MER1_type 0 219 15 1940 110 3 57 chr9 79147927 79148272 -63123172 + AluSx SINE Alu 1 329 0 953 151 0 73 chr9 79148327 79148506 -63122938 + FRAM SINE Alu 1 166 0 2182 101 3 7 chr9 79148732 79149018 -63122426 + AluSg SINE Alu 1 285 -25 570 125 0 0 chr9 79151291 79151371 -63120073 - AluSg/x SINE Alu -148 164 85 213 0 81 0 chr9 79151420 79151457 -63119987 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 301 330 74 44 chr9 79151974 79152271 -63119173 + L1M4 LINE L1 2266 2571 -3575 2113 129 3 16 chr9 79152273 79152584 -63118860 + AluSx SINE Alu 2 308 -4 2860 75 92 2 chr9 79152779 79153190 -63118254 - LTR7 LTR ERV1 -2 448 1 2172 106 48 13 chr9 79153190 79153567 -63117877 - HERVH LTR ERV1 0 7713 7324 1194 147 43 0 chr9 79153567 79153778 -63117666 - HERVH LTR ERV1 -1894 5819 5600 1178 171 5 0 chr9 79153779 79153990 -63117454 - HERVH LTR ERV1 -2564 5149 4938 811 266 73 35 chr9 79154234 79154502 -63116942 - L1M4 LINE L1 -1235 4911 4614 207 0 0 0 chr9 79154502 79154525 -63116919 + (CA)n Simple_repeat Simple_repeat 1 23 0 811 266 73 35 chr9 79154525 79154749 -63116695 - L1M4 LINE L1 -1532 4614 4400 1892 181 23 0 chr9 79154750 79155054 -63116390 - AluJo SINE Alu -1 311 1 582 216 0 0 chr9 79155451 79155576 -63115868 - L1MC5 LINE L1 -516 7445 7321 1432 181 24 47 chr9 79155633 79155931 -63115513 + AluJo SINE Alu 5 295 -17 960 172 0 0 chr9 79156023 79156180 -63115264 - AluJb SINE Alu -21 291 135 2818 175 52 16 chr9 79156247 79156887 -63114557 - L1MB8 LINE L1 -2 6245 5583 1987 241 43 40 chr9 79156895 79157079 -63114365 - L1MB8 LINE L1 -3409 2806 2624 1406 199 72 7 chr9 79157079 79157370 -63114074 - AluJo SINE Alu -2 310 1 1987 241 43 40 chr9 79157370 79158068 -63113376 - L1MB8 LINE L1 -3591 2624 1959 1845 158 25 0 chr9 79158068 79158353 -63113091 - AluJb SINE Alu -19 293 2 1987 241 43 40 chr9 79158353 79158573 -63112871 - L1MB8 LINE L1 -4256 1959 1741 255 256 39 13 chr9 79159048 79159126 -63112318 + MLT1H LTR MaLR 454 533 -16 41 0 0 0 chr9 79159469 79159510 -63111934 + AT_rich Low_complexity Low_complexity 1 41 0 215 278 120 60 chr9 79159813 79159946 -63111498 - L2 LINE L2 0 3272 3132 327 318 53 92 chr9 79160475 79160556 -63110888 - L2 LINE L2 0 3272 3189 2318 102 0 0 chr9 79160556 79160861 -63110583 + AluSg SINE Alu 1 305 -5 327 318 53 92 chr9 79160861 79161137 -63110307 - L2 LINE L2 -83 3189 2929 180 250 83 42 chr9 79161403 79161475 -63109969 - MER5C DNA MER1_type -248 76 2 2381 111 37 0 chr9 79161688 79162039 -63109405 - THE1B LTR MaLR 0 364 1 281 311 57 9 chr9 79162865 79162971 -63108473 - L2 LINE L2 -21 3292 3182 216 343 64 37 chr9 79163333 79163660 -63107784 - L2 LINE L2 -1019 2295 1960 494 329 50 60 chr9 79163700 79164098 -63107346 + L1ME3 LINE L1 5726 6119 -43 410 286 68 7 chr9 79164302 79164449 -63106995 + MIR SINE MIR 102 257 -5 2201 83 0 26 chr9 79164762 79165075 -63106369 - AluSq SINE Alu -8 305 1 2688 51 0 0 chr9 79166145 79166456 -63104988 - AluSx SINE Alu -1 311 1 2194 87 0 65 chr9 79166997 79167319 -63104125 + AluSq SINE Alu 1 301 -12 209 269 45 0 chr9 79167741 79167808 -63103636 - L2 LINE L2 0 3272 3203 657 144 115 7 chr9 79167948 79168162 -63103282 + AluJ SINE Alu 1 280 -32 2210 101 0 10 chr9 79169854 79170151 -63101293 + AluY SINE Alu 1 294 -17 930 222 41 0 chr9 79171336 79171530 -63099914 + MER58A DNA MER1_type 3 204 -20 821 245 57 9 chr9 79171551 79171763 -63099681 + MIR SINE MIR 6 227 -35 287 216 127 26 chr9 79172041 79172276 -63099168 + Charlie7 DNA MER1_type 5 2612 0 258 356 89 0 chr9 79172418 79172508 -63098936 - MIR3 SINE MIR -110 98 1 645 268 185 30 chr9 79172975 79173310 -63098134 - L1ME4a LINE L1 -53 6068 5642 1815 157 41 0 chr9 79173310 79173603 -63097841 - AluJo SINE Alu -7 305 1 645 268 185 30 chr9 79173603 79173726 -63097718 - L1ME4a LINE L1 -479 5642 5539 235 368 0 0 chr9 79173885 79174002 -63097442 - L1ME LINE L1 -299 5822 5706 21 36 0 0 chr9 79174356 79174384 -63097060 + AT_rich Low_complexity Low_complexity 1 28 0 1228 211 68 30 chr9 79174400 79174736 -63096708 - MLT1A2 LTR MaLR -22 352 4 2291 60 0 4 chr9 79175493 79175798 -63095646 + AluY SINE Alu 1 304 0 1251 309 103 9 chr9 79176249 79177154 -63094290 - L2 LINE L2 0 3313 2310 446 304 0 18 chr9 79177585 79177697 -63093747 - FLAM_A SINE Alu -32 110 1 282 98 0 0 chr9 79179166 79179207 -63092237 + L1MB3 LINE L1 6101 6141 -42 21 0 0 0 chr9 79179609 79179630 -63091814 + AT_rich Low_complexity Low_complexity 1 21 0 2164 101 3 7 chr9 79179632 79179930 -63091514 + AluSx SINE Alu 1 297 -15 47 44 0 0 chr9 79180853 79180921 -63090523 + AT_rich Low_complexity Low_complexity 1 68 0 216 327 24 65 chr9 79181430 79181598 -63089846 - L2 LINE L2 -177 3095 2935 741 133 35 0 chr9 79183410 79183523 -63087921 - AluJo SINE Alu -175 137 21 24 53 0 0 chr9 79184518 79184556 -63086888 + AT_rich Low_complexity Low_complexity 1 38 0 903 136 20 0 chr9 79184604 79184751 -63086693 - MLT1A1 LTR MaLR -45 320 171 306 329 94 55 chr9 79185137 79185520 -63085924 + HAL1 LINE L1 2 399 -2108 1248 21 0 0 chr9 79185700 79185840 -63085604 - AluYa5/8 SINE Alu -4 306 167 576 269 237 18 chr9 79186021 79186674 -63084770 + HAL1 LINE L1 990 1785 -722 220 262 0 0 chr9 79186770 79186812 -63084632 + polypurine Low_complexity Low_complexity 3 44 0 387 287 0 37 chr9 79186952 79187088 -63084356 + MER94 DNA DNA 4 134 0 574 263 142 13 chr9 79187246 79187478 -63083966 - MIR SINE MIR 0 262 1 772 300 110 13 chr9 79187897 79188443 -63083001 + L1ME3A LINE L1 5352 5950 -220 618 300 75 10 chr9 79188784 79188984 -63082460 - MIR SINE MIR -18 244 32 286 311 91 15 chr9 79189144 79189276 -63082168 - L2 LINE L2 -1 3312 3171 330 300 68 30 chr9 79189309 79189546 -63081898 + L1ME LINE L1 5530 5775 -346 2503 77 0 0 chr9 79189601 79189901 -63081543 + AluY SINE Alu 1 300 -11 435 314 11 22 chr9 79190205 79190445 -63080999 + C-rich Low_complexity Low_complexity 1 237 0 1404 180 20 10 chr9 79190489 79190784 -63080660 + AluY SINE Alu 3 300 -11 829 184 37 86 chr9 79190849 79191006 -63080438 + MER8 DNA MER2_type 1 143 -96 2237 92 31 0 chr9 79191006 79191298 -63080146 - AluSc SINE Alu -8 301 1 829 184 37 86 chr9 79191298 79191385 -63080059 + MER8 DNA MER2_type 143 233 -6 307 272 11 0 chr9 79192304 79192396 -63079048 - L1ME LINE L1 -402 5719 5627 339 241 48 0 chr9 79192493 79192576 -63078868 - MLT1E3 LTR MaLR -352 272 186 854 163 0 0 chr9 79194591 79194720 -63076724 + FLAM_A SINE Alu 5 133 0 203 171 0 24 chr9 79195703 79195744 -63075700 + L3b LINE CR1 1531 1570 -13 22 56 0 0 chr9 79197094 79197130 -63074314 + AT_rich Low_complexity Low_complexity 1 36 0 400 266 50 14 chr9 79197239 79197378 -63074066 - L2 LINE L2 -3 3310 3167 477 219 22 73 chr9 79197543 79197680 -63073764 - MIR SINE MIR -82 180 51 277 308 63 53 chr9 79198239 79198562 -63072882 - L2 LINE L2 -248 3024 2690 425 250 15 45 chr9 79198712 79198730 -63072714 + MER103 DNA DNA 37 54 -112 2197 70 92 0 chr9 79198730 79199014 -63072430 - AluY SINE Alu -1 310 1 425 250 15 45 chr9 79199014 79199127 -63072317 + MER103 DNA DNA 54 164 -2 211 282 177 32 chr9 79199276 79199553 -63071891 - L2 LINE L2 -816 2498 2182 255 257 213 38 chr9 79199605 79199948 -63071496 - L2 LINE L2 -1292 2022 1620 22 0 0 0 chr9 79200921 79200943 -63070501 + AT_rich Low_complexity Low_complexity 1 22 0 376 259 145 33 chr9 79201318 79201651 -63069793 + L1MEd LINE L1 795 1110 -1397 1231 196 42 61 chr9 79201750 79201952 -63069492 - AluJo SINE Alu -7 305 110 2260 96 9 46 chr9 79201952 79202276 -63069168 - AluSx SINE Alu 0 312 1 1231 196 42 61 chr9 79202276 79202384 -63069060 - AluJo SINE Alu -202 110 1 26 0 0 0 chr9 79202672 79202698 -63068746 + AT_rich Low_complexity Low_complexity 1 26 0 1285 273 30 15 chr9 79202706 79203105 -63068339 - MLT1I LTR MaLR 0 409 5 2226 85 3 42 chr9 79203510 79203817 -63067627 + AluSx SINE Alu 1 295 -17 1367 200 127 11 chr9 79203923 79204415 -63067029 + L1ME1 LINE L1 5444 6047 -119 180 0 0 0 chr9 79204415 79204435 -63067009 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1367 200 127 11 chr9 79204435 79204565 -63066879 + L1ME1 LINE L1 6047 6161 -5 480 266 180 46 chr9 79204702 79205381 -63066063 + L1MC4a LINE L1 2752 3338 -2808 2301 109 0 0 chr9 79205381 79205684 -63065760 + AluSq SINE Alu 1 303 -10 480 266 180 46 chr9 79205684 79205707 -63065737 + L1MC4a LINE L1 3338 3357 -2789 1515 145 38 88 chr9 79205707 79206024 -63065420 + AluJo SINE Alu 1 301 -11 480 266 180 46 chr9 79206024 79206418 -63065026 + L1MC4a LINE L1 3357 3996 -2150 293 299 111 17 chr9 79206608 79207003 -63064441 + L1MC4a LINE L1 4261 4693 -1453 695 305 116 12 chr9 79207485 79207995 -63063449 + L1MC4a LINE L1 5312 5786 -335 310 252 39 29 chr9 79208582 79208685 -63062759 + MER112 DNA MER1_type 151 254 -6 2533 44 7 3 chr9 79209862 79210158 -63061286 + AluY SINE Alu 1 297 -14 1274 76 0 0 chr9 79211020 79211177 -63060267 + AluY SINE Alu 1 157 -154 1611 165 0 90 chr9 79212490 79212612 -63058832 + AluJb SINE Alu 13 144 -168 419 113 32 0 chr9 79212612 79212674 -63058770 + L1PA8 LINE L1 6094 6157 -15 1611 165 0 90 chr9 79212674 79212873 -63058571 + AluJb SINE Alu 144 305 -7 1206 136 0 0 chr9 79213506 79213675 -63057769 + AluJb SINE Alu 1 169 -143 3407 64 73 192 chr9 79213675 79214876 -63056568 - LTR12 LTR ERV1 0 714 1 745 129 79 36 chr9 79214876 79215016 -63056428 + AluJb SINE Alu 166 311 -1 798 196 6 36 chr9 79215117 79215285 -63056159 + L1MB2 LINE L1 5449 5611 -560 502 208 129 0 chr9 79215286 79215387 -63056057 + FLAM_C SINE Alu 5 118 -25 3395 110 36 38 chr9 79215415 79215996 -63055448 + L1MB2 LINE L1 5592 6171 0 2118 136 7 0 chr9 79217115 79217423 -63054021 + AluSx SINE Alu 1 310 -2 847 233 0 0 chr9 79217463 79217626 -63053818 + FRAM SINE Alu 1 163 -3 310 250 12 12 chr9 79217732 79217816 -63053628 + MLT1K LTR MaLR 494 577 -11 2482 83 0 0 chr9 79218076 79218377 -63053067 + AluSg SINE Alu 1 301 -9 181 262 66 16 chr9 79219988 79220049 -63051395 + L3 LINE CR1 1507 1570 -7 1865 172 143 8 chr9 79220226 79220603 -63050841 - MSTA LTR MaLR 0 428 1 407 233 108 31 chr9 79220891 79221020 -63050424 - L2 LINE L2 -3 3310 3172 640 316 74 12 chr9 79221058 79221381 -63050063 - L2 LINE L2 -465 2849 2507 1200 114 97 0 chr9 79221570 79221746 -63049698 + Tigger3(Golem) DNA MER2_type 2834 3026 -3 180 0 0 0 chr9 79222672 79222692 -63048752 + (A)n Simple_repeat Simple_repeat 1 20 0 818 146 0 8 chr9 79222894 79223024 -63048420 + FLAM_C SINE Alu 1 129 -4 1779 135 63 6 chr9 79223033 79223351 -63048093 + L1MB3 LINE L1 5847 6182 -1 664 133 9 0 chr9 79223512 79223617 -63047827 - AluSx SINE Alu -15 294 189 493 145 12 0 chr9 79223617 79223700 -63047744 + L1MB2 LINE L1 5909 5992 -179 1305 122 0 65 chr9 79223701 79223915 -63047529 - AluSx SINE Alu -112 200 1 2631 56 0 0 chr9 79224271 79224573 -63046871 - AluY SINE Alu -9 302 1 428 238 105 50 chr9 79224804 79224984 -63046460 + MER102a DNA MER1_type 57 246 -84 809 245 184 31 chr9 79224984 79225311 -63046133 - MLT1J2 LTR MaLR -2 448 72 305 200 153 12 chr9 79225410 79225495 -63045949 + MER102a DNA MER1_type 231 327 -3 186 300 18 36 chr9 79226626 79226736 -63044708 - MIR3 SINE MIR -6 202 95 420 289 21 32 chr9 79229104 79229294 -63042150 + MER112 DNA MER1_type 6 193 -67 1203 134 0 11 chr9 79229294 79229473 -63041971 + FRAM SINE Alu 1 176 0 2265 83 10 29 chr9 79229798 79230112 -63041332 - AluSc SINE Alu -1 308 1 379 214 60 26 chr9 79230303 79230420 -63041024 - L1MC5 LINE L1 -30 7931 7811 1859 131 0 70 chr9 79231012 79231340 -63040104 - AluJo SINE Alu -7 305 1 2279 95 6 25 chr9 79232748 79233063 -63038381 + AluY SINE Alu 1 309 -2 252 290 130 0 chr9 79233072 79233172 -63038272 + MER5A DNA MER1_type 77 189 0 713 264 149 19 chr9 79234390 79234827 -63036617 - MLT1K LTR MaLR -9 579 15 2362 104 0 0 chr9 79235409 79235716 -63035728 - AluSx SINE Alu -5 307 1 294 178 14 41 chr9 79235773 79235846 -63035598 - MLT1K LTR MaLR -86 502 432 225 305 21 21 chr9 79235997 79236092 -63035352 - MLT1K LTR MaLR -417 171 77 973 194 12 0 chr9 79236190 79236360 -63035084 - FAM SINE Alu 0 175 4 525 234 69 51 chr9 79237198 79237311 -63034133 + MER97b DNA MER1_type? 2 121 -932 2140 113 22 100 chr9 79237311 79237761 -63033683 - L1MB3 LINE L1 -2 6181 5767 525 234 69 51 chr9 79237761 79237822 -63033622 + MER97b DNA MER1_type? 121 179 -874 2378 82 3 0 chr9 79238061 79238355 -63033089 + AluSg SINE Alu 1 295 -15 2061 127 3 0 chr9 79238977 79239260 -63032184 + AluSx SINE Alu 3 286 -26 279 105 0 0 chr9 79239360 79239398 -63032046 - Alu SINE Alu -264 38 1 2474 199 42 40 chr9 79239691 79240314 -63031130 + MLT1E3 LTR MaLR 1 624 0 2366 71 0 14 chr9 79240941 79241268 -63030176 - AluY SINE Alu 0 311 1 2025 75 41 88 chr9 79241679 79241998 -63029446 - AluY SINE Alu -7 304 1 2284 119 0 7 chr9 79243131 79243441 -63028003 - AluSx SINE Alu -4 308 1 1845 154 21 27 chr9 79243461 79243799 -63027645 + MLT1B LTR MaLR 1 336 -54 295 155 35 0 chr9 79243809 79243867 -63027577 + MER65A LTR ERV1 383 442 -3 579 254 10 42 chr9 79244002 79244195 -63027249 - MER5A DNA MER1_type 0 189 3 521 165 0 35 chr9 79244338 79244415 -63027029 - MER30 DNA MER1_type -3 227 152 736 200 117 7 chr9 79244415 79244560 -63026884 - FRAM SINE Alu -5 161 1 1546 142 14 102 chr9 79244565 79244909 -63026535 + MLT1B LTR MaLR 73 386 -4 7797 177 80 24 chr9 79244915 79246576 -63024868 - MER52A LTR ERV1 0 1755 1 909 240 59 18 chr9 79246614 79246835 -63024609 - MIR SINE MIR -5 257 28 1056 208 28 0 chr9 79247316 79247528 -63023916 - MER20 DNA MER1_type 0 219 2 285 220 28 209 chr9 79247552 79247619 -63023825 - MER91B DNA MER1_type -40 150 135 1900 150 0 0 chr9 79247619 79247913 -63023531 - AluJb SINE Alu -17 295 2 285 220 28 209 chr9 79247913 79248027 -63023417 - MER91B DNA MER1_type -55 135 2 803 285 28 9 chr9 79248916 79249130 -63022314 - MIR SINE MIR -11 251 34 4438 202 27 16 chr9 79249263 79249971 -63021473 + L1MB2 LINE L1 4295 4994 -1177 2132 96 0 3 chr9 79249971 79250264 -63021180 + AluSg SINE Alu 1 292 -18 4438 202 27 16 chr9 79250264 79250568 -63020876 + L1MB2 LINE L1 4994 5293 -878 2222 109 0 6 chr9 79250568 79250881 -63020563 + AluSq SINE Alu 1 311 -2 4438 202 27 16 chr9 79250881 79251711 -63019733 + L1MB2 LINE L1 5293 6152 -19 738 242 145 0 chr9 79251756 79251942 -63019502 + AluJo SINE Alu 2 214 -98 981 195 65 0 chr9 79252043 79252243 -63019201 - MLT2B1 LTR ERVL -307 213 1 821 237 58 13 chr9 79252246 79252470 -63018974 - LTR52 LTR ERVL -187 234 1 274 250 0 53 chr9 79252731 79252807 -63018637 - MLT1K LTR MaLR -180 408 337 1723 186 62 23 chr9 79253093 79253479 -63017965 + L1MB7 LINE L1 5779 6179 -5 341 222 67 67 chr9 79253733 79253868 -63017576 + MER103 DNA DNA 32 166 0 555 343 40 5 chr9 79254040 79254238 -63017206 + MIR SINE MIR 47 251 -11 604 267 180 14 chr9 79254702 79254919 -63016525 + MIR SINE MIR 9 261 -1 919 160 47 24 chr9 79256073 79256242 -63015202 - MER20 DNA MER1_type -42 177 5 205 323 72 75 chr9 79256245 79256579 -63014865 + L2 LINE L2 2645 2977 -337 195 191 128 21 chr9 79256637 79256684 -63014760 - L2 LINE L2 -50 3222 3171 421 171 13 0 chr9 79258500 79258576 -63012868 + MER67D LTR ERV1 1 77 -437 742 141 51 102 chr9 79258632 79258649 -63012795 + MER67C LTR ERV1 80 96 -614 2113 119 6 0 chr9 79258649 79258960 -63012484 - AluSq SINE Alu 0 313 1 742 141 51 102 chr9 79258960 79259119 -63012325 + MER67C LTR ERV1 96 247 -463 21 71 0 0 chr9 79259135 79259177 -63012267 + AT_rich Low_complexity Low_complexity 1 42 0 1040 204 40 53 chr9 79259189 79259506 -63011938 + MER67C LTR ERV1 203 508 -6 841 101 0 0 chr9 79259509 79259650 -63011794 - AluSx SINE Alu 0 334 194 1046 101 0 0 chr9 79259651 79259790 -63011654 - AluSx SINE Alu -172 141 3 2535 262 84 57 chr9 79259910 79260357 -63011087 + L2 LINE L2 1842 2275 -1038 2255 88 0 22 chr9 79260357 79260674 -63010770 - AluY SINE Alu -1 310 1 2535 262 84 57 chr9 79260674 79261529 -63009915 + L2 LINE L2 2275 3188 -125 1542 167 50 10 chr9 79261529 79261829 -63009615 - AluJb SINE Alu 0 312 1 2535 262 84 57 chr9 79261829 79261958 -63009486 + L2 LINE L2 3188 3312 -1 1544 154 26 56 chr9 79262402 79262708 -63008736 + AluJo SINE Alu 1 297 -15 1591 184 23 10 chr9 79263041 79263345 -63008099 + AluJb SINE Alu 1 308 -4 279 261 133 59 chr9 79263346 79263549 -63007895 - MLT1L LTR MaLR -335 280 63 404 314 40 0 chr9 79264396 79264520 -63006924 + L2 LINE L2 3182 3310 -3 549 268 39 39 chr9 79264801 79264980 -63006464 - MIR SINE MIR -21 241 63 1026 170 36 18 chr9 79265200 79265424 -63006020 + L1MB2 LINE L1 5944 6171 0 1713 128 38 0 chr9 79266312 79266577 -63004867 - AluSx SINE Alu -33 279 5 375 306 109 0 chr9 79269427 79269620 -63001824 + L1MC4a LINE L1 5684 5897 -1911 2252 98 0 0 chr9 79269642 79269949 -63001495 - AluSx SINE Alu -5 307 1 1810 134 3 14 chr9 79270517 79270821 -63000623 + AluSx SINE Alu 1 301 0 564 253 108 0 chr9 79270951 79271109 -63000335 + MER96 DNA MER1_type 1 175 0 288 215 264 33 chr9 79271211 79271384 -63000060 - MIR SINE MIR -50 212 16 231 253 96 34 chr9 79272034 79272180 -62999264 - L1ME4a LINE L1 -2 6119 5965 700 185 7 0 chr9 79272204 79272339 -62999105 - L1PA16 LINE L1 -9 6157 6022 249 311 107 29 chr9 79273426 79273529 -62997915 - MIR SINE MIR -109 153 43 183 80 0 0 chr9 79273538 79273563 -62997881 + (A)n Simple_repeat Simple_repeat 1 25 0 349 236 28 86 chr9 79273667 79273823 -62997621 - MER5A DNA MER1_type -25 164 7 2167 103 3 0 chr9 79274445 79274746 -62996698 - AluSx SINE Alu -10 302 1 524 228 84 114 chr9 79274935 79275137 -62996307 + MIR SINE MIR 66 261 -1 433 263 194 34 chr9 79275247 79275422 -62996022 - MIR SINE MIR -54 208 6 2091 85 18 0 chr9 79275700 79275983 -62995461 - AluSx SINE Alu -16 296 9 2144 95 10 0 chr9 79276635 79276940 -62994504 + AluSg SINE Alu 1 308 -2 2215 115 0 0 chr9 79277496 79277809 -62993635 + AluSp SINE Alu 1 313 0 2091 92 11 0 chr9 79278166 79278477 -62992967 + AluSx SINE Alu 1 314 0 264 306 50 62 chr9 79278518 79278710 -62992734 - L1ME4a LINE L1 -105 6016 5826 1490 176 22 44 chr9 79278710 79279029 -62992415 - AluJo SINE Alu 0 312 1 264 306 50 62 chr9 79279029 79279094 -62992350 - L1ME4a LINE L1 -295 5826 5762 558 222 62 40 chr9 79280311 79280487 -62990957 + MIR SINE MIR 9 188 -74 210 167 0 0 chr9 79281281 79281317 -62990127 - L2 LINE L2 -29 3243 3208 254 240 122 125 chr9 79281373 79281685 -62989759 - MLT1K LTR MaLR -91 497 187 1790 150 7 0 chr9 79282331 79282625 -62988819 - AluJo SINE Alu -8 304 9 1218 210 116 50 chr9 79283493 79283931 -62987513 - MLT1C LTR MaLR 0 467 1 917 211 5 4 chr9 79284993 79285768 -62985676 + (TCCA)n Simple_repeat Simple_repeat 1 776 0 196 356 0 11 chr9 79285772 79285859 -62985585 - L2 LINE L2 -1 3271 3186 1859 138 0 29 chr9 79287005 79287316 -62984128 + AluJo SINE Alu 1 302 -10 230 191 0 29 chr9 79287327 79287395 -62984049 + (CATA)n Simple_repeat Simple_repeat 2 67 0 295 68 0 0 chr9 79290244 79290288 -62981156 + L1MA3 LINE L1 6262 6305 0 1124 266 81 47 chr9 79290364 79290651 -62980793 - MLT1H LTR MaLR 0 549 273 198 0 0 0 chr9 79290651 79290673 -62980771 + (TA)n Simple_repeat Simple_repeat 2 23 0 2147 105 0 23 chr9 79290673 79290977 -62980467 - AluSg SINE Alu -13 297 1 1124 266 81 47 chr9 79290977 79291132 -62980312 - MLT1H LTR MaLR -275 274 91 649 196 0 63 chr9 79291154 79291297 -62980147 - MIR SINE MIR -50 212 79 354 259 122 0 chr9 79291429 79291560 -62979884 - MIR SINE MIR -34 228 82 2094 95 3 7 chr9 79294043 79294337 -62977107 - AluSx SINE Alu -19 293 1 182 326 84 0 chr9 79294452 79294547 -62976897 + MIR3 SINE MIR 55 157 -51 1693 167 3 10 chr9 79295324 79295617 -62975827 - AluJo SINE Alu -21 291 1 1931 130 7 0 chr9 79295718 79296003 -62975441 - AluSx SINE Alu -17 295 9 2162 112 3 0 chr9 79296559 79296853 -62974591 + AluSq SINE Alu 1 295 -18 38072 86 12 10 chr9 79298050 79299901 -62971543 + L1PA6 LINE L1 3 1850 -4304 2380 70 0 35 chr9 79299901 79300217 -62971227 - AluY SINE Alu -6 305 1 38072 86 12 10 chr9 79300217 79304506 -62966938 + L1PA6 LINE L1 1850 6150 -4 2711 220 43 52 chr9 79304668 79305133 -62966311 - L1MC4 LINE L1 -15 8027 7570 1705 131 27 101 chr9 79305133 79305469 -62965975 + AluJo SINE Alu 1 311 -1 2711 220 43 52 chr9 79305469 79305795 -62965649 - L1MC4 LINE L1 -472 7570 7243 324 181 96 166 chr9 79306968 79307079 -62964365 - MSTC LTR MaLR -267 190 98 252 0 0 0 chr9 79307079 79307107 -62964337 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 324 181 96 166 chr9 79307107 79307194 -62964250 - MSTC LTR MaLR -359 98 6 386 303 97 13 chr9 79307368 79307523 -62963921 - MLT1K LTR MaLR -319 269 102 292 281 118 90 chr9 79307560 79307738 -62963706 - L2 LINE L2 -98 3174 2992 1012 229 16 102 chr9 79307897 79307984 -62963460 + L1P1 LINE L1 5512 5605 -550 7948 38 0 5 chr9 79307984 79309366 -62962078 - L1PA4 LINE L1 -3 6152 4774 1012 229 16 102 chr9 79309366 79309669 -62961775 + L1P1 LINE L1 5605 5872 -283 665 259 59 55 chr9 79309669 79310072 -62961372 + LTR33A LTR ERVL 2 436 -87 459 310 144 26 chr9 79310144 79310798 -62960646 - L2 LINE L2 -972 2342 1612 752 221 0 0 chr9 79311029 79311151 -62960293 - FLAM_A SINE Alu -10 123 2 2036 107 28 0 chr9 79311158 79311449 -62959995 - L1MA5A LINE L1 -2 6295 5997 1698 224 144 11 chr9 79311673 79312151 -62959293 - MER34 LTR ERV1 0 542 1 199 152 15 15 chr9 79313214 79313280 -62958164 + (TA)n Simple_repeat Simple_repeat 1 66 0 653 101 0 0 chr9 79313468 79313557 -62957887 - AluSg/x SINE Alu -4 305 217 1566 65 0 0 chr9 79313557 79313743 -62957701 - AluY SINE Alu -125 186 1 1330 189 36 47 chr9 79313825 79313995 -62957449 - MLT1H LTR MaLR -231 364 194 1842 156 6 32 chr9 79313995 79314310 -62957134 - AluJb SINE Alu -5 307 1 1330 189 36 47 chr9 79314310 79314465 -62956979 - MLT1H LTR MaLR -401 194 13 216 355 80 7 chr9 79315388 79315526 -62955918 - L3b LINE CR1 -8 1575 1428 2941 190 31 0 chr9 79315572 79316120 -62955324 - L1MB2 LINE L1 -1 6170 5606 345 185 204 0 chr9 79416168 79416276 -62855168 + MLT1D LTR MaLR 365 494 -11 812 119 0 0 chr9 79417139 79417248 -62854196 + AluY SINE Alu 1 109 -202 535 223 29 51 chr9 79417531 79417706 -62853738 + L1ME3 LINE L1 5975 6145 -17 289 182 0 26 chr9 79417742 79417819 -62853625 + (TA)n Simple_repeat Simple_repeat 1 75 0 23 0 0 0 chr9 79417951 79417974 -62853470 + AT_rich Low_complexity Low_complexity 1 23 0 1605 209 17 0 chr9 79418701 79418998 -62852446 - AluJb SINE Alu -10 302 1 1437 112 0 0 chr9 79419719 79419907 -62851537 - AluSx SINE Alu -124 188 1 231 96 385 0 chr9 79419907 79419959 -62851485 + Charlie1 DNA MER1_type 2634 2705 -56 189 292 194 0 chr9 79420003 79420075 -62851369 - L2 LINE L2 -1 3312 3227 259 266 96 11 chr9 79420260 79420354 -62851090 + MIR SINE MIR 110 211 -51 273 307 104 91 chr9 79420601 79420718 -62850726 - L3 LINE CR1 -1081 496 382 2039 126 0 3 chr9 79420718 79421003 -62850441 + AluSg SINE Alu 1 284 -26 1856 108 59 38 chr9 79421008 79421295 -62850149 + AluSx SINE Alu 1 293 -19 273 307 104 91 chr9 79421295 79421412 -62850032 - L3 LINE CR1 -1198 379 253 437 309 41 124 chr9 79421485 79421847 -62849597 - L2 LINE L2 -4 3268 2937 * 1175 323 122 29 chr9 79421844 79422909 -62848535 + L2 LINE L2 1848 3006 -266 24 0 0 0 chr9 79423119 79423143 -62848301 + AT_rich Low_complexity Low_complexity 1 24 0 303 301 186 47 chr9 79423229 79423525 -62847919 - L2 LINE L2 -440 2874 2538 352 328 47 31 chr9 79424014 79424142 -62847302 - L2 LINE L2 -5 3267 3138 22 35 0 0 chr9 79424156 79424185 -62847259 + AT_rich Low_complexity Low_complexity 1 29 0 1374 203 68 73 chr9 79424992 79425460 -62845984 + MER31B LTR ERV1 1 466 0 215 225 125 125 chr9 79425630 79425672 -62845772 - MER5A DNA MER1_type 0 189 148 617 212 15 0 chr9 79425672 79425809 -62845635 + L1PA16 LINE L1 6022 6160 -6 215 225 125 125 chr9 79425809 79425878 -62845566 - MER5A DNA MER1_type -41 148 75 2301 89 3 0 chr9 79425878 79426170 -62845274 - AluY SINE Alu -18 293 1 215 225 125 125 chr9 79426170 79426217 -62845227 - MER5A DNA MER1_type -113 76 30 228 271 13 73 chr9 79426221 79426334 -62845110 - MIR SINE MIR -64 144 36 2108 137 0 7 chr9 79426414 79426440 -62845004 - AluSx SINE Alu -8 304 279 411 21 0 0 chr9 79426440 79426488 -62844956 + (TG)n Simple_repeat Simple_repeat 1 48 0 2108 137 0 7 chr9 79426488 79426767 -62844677 - AluSx SINE Alu -33 279 1 1998 182 68 60 chr9 79427083 79427119 -62844325 + MLT2B1 LTR ERVL 1 35 -485 2059 152 82 20 chr9 79427119 79427520 -62843924 - MSTA LTR MaLR -2 426 1 1998 182 68 60 chr9 79427520 79427995 -62843449 + MLT2B1 LTR ERVL 35 516 -4 333 214 6 60 chr9 79428000 79428168 -62843276 + T-rich Low_complexity Low_complexity 3 161 0 1096 164 49 4 chr9 79429041 79429120 -62842324 - L1MB1 LINE L1 -1 6167 6093 276 30 0 0 chr9 79429120 79429153 -62842291 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 297 0 0 0 chr9 79429152 79429185 -62842259 + (CA)n Simple_repeat Simple_repeat 2 34 0 1096 164 49 4 chr9 79429153 79429330 -62842114 - L1MB1 LINE L1 -75 6093 5933 2125 141 36 30 chr9 79429357 79429719 -62841725 - THE1B LTR MaLR 0 364 1 245 297 0 0 chr9 79430058 79430122 -62841322 - MLT1L LTR MaLR -205 410 347 287 243 26 22 chr9 79430511 79430629 -62840815 - MLT1H LTR MaLR -268 162 19 841 294 40 4 chr9 79431062 79431310 -62840134 - MIR SINE MIR 0 262 6 2258 199 32 4 chr9 79431869 79432372 -62839072 + Charlie1b DNA MER1_type 7 523 0 2127 134 10 0 chr9 79434062 79434367 -62837077 - AluSx SINE Alu -1 311 4 1234 214 11 14 chr9 79434367 79434652 -62836792 - L1MB5 LINE L1 -75 6099 5816 344 237 38 8 chr9 79434656 79434787 -62836657 - L1ME LINE L1 -3645 2435 2301 1526 179 24 40 chr9 79434969 79435348 -62836096 - LTR52 LTR ERVL -48 373 1 602 159 9 0 chr9 79435420 79435533 -62835911 - L1MCa LINE L1 -5372 1192 1079 5847 129 17 8 chr9 79435533 79436511 -62834933 - Tigger1 DNA MER2_type 0 2418 1432 351 133 0 239 chr9 79436514 79436627 -62834817 - Tigger1 DNA MER2_type -2309 109 24 1746 187 33 29 chr9 79436636 79437085 -62834359 - L1MCa LINE L1 -4967 1078 628 1156 252 182 23 chr9 79437118 79437521 -62833923 - L1MCa LINE L1 -5838 726 388 537 44 0 0 chr9 79437521 79437589 -62833855 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 1658 182 4 18 chr9 79437594 79437874 -62833570 - AluJo SINE Alu -36 276 1 1156 252 182 23 chr9 79437874 79437948 -62833496 - L1MCa LINE L1 -6179 385 166 860 266 66 101 chr9 79438001 79438221 -62833223 - L1ME LINE L1 -4131 2130 1904 2164 121 0 0 chr9 79438221 79438511 -62832933 - AluSp SINE Alu -23 290 1 860 266 66 101 chr9 79438511 79439915 -62831529 - L1ME LINE L1 -4357 1904 388 186 71 0 0 chr9 79440182 79440210 -62831234 + (TG)n Simple_repeat Simple_repeat 1 28 0 367 350 66 15 chr9 79440227 79440501 -62830943 - L1ME LINE L1 -5660 410 123 226 241 9 56 chr9 79441035 79441143 -62830301 + CT-rich Low_complexity Low_complexity 4 106 0 21 0 0 0 chr9 79441252 79441273 -62830171 + AT_rich Low_complexity Low_complexity 1 21 0 304 287 78 9 chr9 79442197 79442312 -62829132 + MER94 DNA DNA 11 133 -1 250 306 31 31 chr9 79443274 79443372 -62828072 + MIR SINE MIR 45 142 -120 1826 178 6 39 chr9 79444463 79444822 -62826622 + MER82 DNA MER2_type 8 354 -299 1137 119 0 0 chr9 79444826 79444977 -62826467 - AluSg/x SINE Alu -10 302 152 1180 210 6 94 chr9 79444977 79445306 -62826138 + MER82 DNA MER2_type 348 647 -6 1467 175 86 7 chr9 79445409 79445689 -62825755 - AluJb SINE Alu -10 302 1 225 321 252 2 chr9 79445689 79445876 -62825568 - MIR SINE MIR -10 252 21 1505 130 50 33 chr9 79446070 79446370 -62825074 + THE1C LTR MaLR 1 305 -70 381 131 0 0 chr9 79447999 79448060 -62823384 + (T)n Simple_repeat Simple_repeat 1 61 0 216 0 0 0 chr9 79448454 79448478 -62822966 + (T)n Simple_repeat Simple_repeat 1 24 0 1880 144 0 19 chr9 79448495 79448808 -62822636 + AluY SINE Alu 1 307 -4 279 0 0 0 chr9 79449840 79449871 -62821573 + (CA)n Simple_repeat Simple_repeat 2 32 0 319 51 0 0 chr9 79450573 79450612 -62820832 - U6 snRNA snRNA -68 39 1 2097 144 44 8 chr9 79451587 79451949 -62819495 + THE1C LTR MaLR 1 375 0 2037 132 10 0 chr9 79452248 79452537 -62818907 - AluSx SINE Alu -20 292 1 809 204 126 20 chr9 79452953 79453271 -62818173 + MER31B LTR ERV1 1 465 -1 615 220 167 7 chr9 79455864 79456014 -62815430 + MER5A DNA MER1_type 9 182 -7 245 233 0 17 chr9 79456575 79456635 -62814809 + (TA)n Simple_repeat Simple_repeat 2 60 0 393 294 63 0 chr9 79457321 79457447 -62813997 + MIR3 SINE MIR 51 184 -24 208 231 39 64 chr9 79457560 79457638 -62813806 + MIR SINE MIR 75 150 -112 450 298 70 47 chr9 79457687 79458029 -62813415 + LTR33 LTR ERVL 47 396 -125 2113 139 45 16 chr9 79458173 79458311 -62813133 - MLT1B LTR MaLR 0 390 258 2626 94 11 0 chr9 79458311 79458671 -62812773 - THE1B LTR MaLR 0 364 1 2113 139 45 16 chr9 79458671 79458906 -62812538 - MLT1B LTR MaLR -132 258 6 374 303 66 0 chr9 79459207 79459329 -62812115 + MIR SINE MIR 77 206 -56 235 248 109 59 chr9 79459433 79459534 -62811910 + L2 LINE L2 3199 3304 -9 2222 102 8 20 chr9 79459826 79460180 -62811264 - Tigger7 DNA MER2_type 0 2487 2138 589 198 9 0 chr9 79460178 79460294 -62811150 - Tigger7 DNA MER2_type -2370 117 1 * 316 63 0 54 chr9 79460704 79460744 -62810700 + MSTB1 LTR MaLR 371 412 -45 1574 107 27 0 chr9 79460744 79460968 -62810476 - MER30 DNA MER1_type 0 230 1 316 63 0 54 chr9 79460968 79460998 -62810446 + MSTB1 LTR MaLR 412 457 0 202 246 140 0 chr9 79461014 79461071 -62810373 + MIR3 SINE MIR 141 205 -3 6288 19 0 0 chr9 79461160 79461879 -62809565 - L1PA2 LINE L1 0 6155 5437 2357 90 0 0 chr9 79462013 79462301 -62809143 + AluSc SINE Alu 8 295 -14 731 287 84 46 chr9 79462431 79462884 -62808560 + Charlie8 DNA MER1_type 34 503 -1914 336 360 56 9 chr9 79463119 79463352 -62808092 - MLT1I LTR MaLR -156 253 10 2180 125 0 10 chr9 79464743 79465054 -62806390 - AluSx SINE Alu -4 308 1 297 268 0 12 chr9 79466072 79466154 -62805290 + (TA)n Simple_repeat Simple_repeat 1 81 0 370 86 86 0 chr9 79466771 79466829 -62804615 + MSTB2 LTR MaLR 1 63 -394 2834 182 66 11 chr9 79466829 79467477 -62803967 - L1MB7 LINE L1 -152 6530 5847 1626 129 5 80 chr9 79467477 79467848 -62803596 - MER4A LTR ERV1 0 664 263 562 141 0 10 chr9 79467848 79467947 -62803497 - MER4A LTR ERV1 -566 98 1 1757 183 0 22 chr9 79467977 79468294 -62803150 - AluJb SINE Alu -2 310 1 3397 234 44 30 chr9 79468294 79469513 -62801931 - L1MB7 LINE L1 -814 5830 4594 1681 226 179 14 chr9 79469530 79470329 -62801115 - L1MB7 LINE L1 -4180 2466 1536 * 4642 158 44 3 chr9 79470319 79471280 -62800164 - L1M2 LINE L1 -4146 2703 1704 5808 222 45 13 chr9 79471285 79472585 -62798859 - L1M2 LINE L1 -5501 1348 7 4940 223 45 27 chr9 79472592 79473949 -62797495 - L1MB7 LINE L1 -5157 1385 5 28 79 0 0 chr9 79475155 79475218 -62796226 + AT_rich Low_complexity Low_complexity 1 63 0 2415 90 0 10 chr9 79475444 79475755 -62795689 + AluSc SINE Alu 1 308 -1 904 310 51 36 chr9 79475900 79476375 -62795069 + L2 LINE L2 2783 3295 -18 3814 153 24 6 chr9 79477096 79477800 -62793644 - L1MA4 LINE L1 0 6300 5584 1261 289 68 31 chr9 79478077 79478892 -62792552 + HAL1 LINE L1 4 1036 -1471 214 250 0 0 chr9 79479582 79479626 -62791818 + GA-rich Low_complexity Low_complexity 5 48 0 261 376 29 41 chr9 79479678 79479848 -62791596 - MIR SINE MIR -81 181 14 1426 217 21 52 chr9 79481016 79481398 -62790046 - MLT1A2 LTR MaLR -4 370 1 481 310 69 5 chr9 79481869 79482072 -62789372 + MIR SINE MIR 29 244 -18 540 68 0 0 chr9 79482794 79482867 -62788577 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 261 253 111 95 chr9 79483863 79484053 -62787391 + MER102b DNA MER1_type 147 339 -2 1362 180 46 32 chr9 79484234 79484582 -62786862 - MLT1A1 LTR MaLR -11 354 1 513 133 0 0 chr9 79485074 79485172 -62786272 + (GGAA)n Simple_repeat Simple_repeat 1 98 0 598 263 69 78 chr9 79485507 79485826 -62785618 + LTR16A LTR ERVL 117 432 -18 522 191 40 8 chr9 79485968 79486094 -62785350 + MER3 DNA MER1_type 54 183 -26 365 363 35 47 chr9 79487269 79487525 -62783919 - L2 LINE L2 -5 3267 3015 838 271 52 35 chr9 79487707 79488050 -62783394 + MLT1I LTR MaLR 26 374 -35 336 287 183 0 chr9 79488092 79488207 -62783237 + L2 LINE L2 3134 3269 -3 2340 72 13 3 chr9 79488285 79488589 -62782855 + AluY SINE Alu 1 307 -4 335 282 116 24 chr9 79489417 79489754 -62781690 - MLT1J1 LTR MaLR -6 435 71 5035 197 46 33 chr9 79490030 79490741 -62780703 + Charlie1a DNA MER1_type 1 738 -2023 2163 107 13 3 chr9 79490741 79491039 -62780405 - AluSx SINE Alu -11 301 1 5035 197 46 33 chr9 79491039 79491643 -62779801 + Charlie1a DNA MER1_type 738 1333 -122 425 293 32 0 chr9 79492369 79492492 -62778952 + MER94 DNA DNA 1 127 -7 24 53 0 0 chr9 79492717 79492755 -62778689 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr9 79494174 79494196 -62777248 + AT_rich Low_complexity Low_complexity 1 22 0 254 280 27 0 chr9 79494425 79494500 -62776944 + CT-rich Low_complexity Low_complexity 3 79 0 185 344 66 16 chr9 79494699 79494821 -62776623 - L2 LINE L2 -173 3099 2972 195 256 0 0 chr9 79495080 79495119 -62776325 - MIR SINE MIR -168 94 56 591 310 10 65 chr9 79495435 79495819 -62775625 - MLT1I LTR MaLR -7 402 40 624 216 148 0 chr9 79495959 79496135 -62775309 - MER3 DNA MER1_type -1 208 7 1119 224 9 5 chr9 79496148 79496371 -62775073 - MER58A DNA MER1_type 0 224 1 229 290 113 82 chr9 79496410 79496738 -62774706 + Charlie7 DNA MER1_type 41 378 -2234 243 286 60 0 chr9 79496799 79496883 -62774561 + LTR50 LTR ERVL 51 139 -656 550 241 173 18 chr9 79497021 79497362 -62774082 + LTR50 LTR ERVL 402 795 0 741 241 35 0 chr9 79497487 79497715 -62773729 + Charlie7 DNA MER1_type 622 857 -1755 3060 242 45 14 chr9 79497869 79498832 -62772612 + Charlie7 DNA MER1_type 886 1877 -735 925 235 81 16 chr9 79498926 79499309 -62772135 + Charlie7 DNA MER1_type 2020 2427 -185 247 283 53 26 chr9 79499346 79499572 -62771872 + L1ME3A LINE L1 2032 2263 -4133 246 81 0 0 chr9 79499773 79499810 -62771634 + (TC)n Simple_repeat Simple_repeat 2 38 0 1177 272 124 7 chr9 79499826 79500675 -62770769 + L1ME3A LINE L1 2586 3551 -2664 * 2297 255 77 39 chr9 79500656 79502297 -62769147 + L1ME3A LINE L1 4531 6236 -3 1185 186 75 45 chr9 79502600 79502946 -62768498 + MSTD LTR MaLR 1 396 0 189 107 0 0 chr9 79504282 79504310 -62767134 + (GA)n Simple_repeat Simple_repeat 2 29 0 3703 222 32 38 chr9 79504408 79505341 -62766103 - MER63C DNA MER1_type -1 929 2 396 220 73 37 chr9 79505488 79505597 -62765847 - MER103 DNA DNA -46 120 8 468 302 217 42 chr9 79506378 79507070 -62764374 - L3 LINE CR1 -127 1450 638 967 295 77 28 chr9 79507775 79508317 -62763127 + L2 LINE L2 2708 3313 0 3199 218 85 57 chr9 79508712 79509697 -62761747 + MSTD-int LTR MaLR 634 1735 0 1128 175 83 29 chr9 79509697 79510028 -62761416 + MSTD LTR MaLR 1 396 0 1289 334 115 40 chr9 79510028 79511276 -62760168 + L2 LINE L2 1367 2708 -606 462 233 8 62 chr9 79512887 79513016 -62758428 - MIR3 SINE MIR -2 206 85 575 241 15 8 chr9 79514629 79514762 -62756682 - MIR SINE MIR -46 216 83 262 190 0 86 chr9 79514881 79514909 -62756535 - L2 LINE L2 -8 3264 3242 4559 93 40 24 chr9 79514909 79515533 -62755911 - MER51A LTR ERV1 0 634 1 262 190 0 86 chr9 79515533 79515562 -62755882 - L2 LINE L2 -30 3242 3212 23 0 0 0 chr9 79516258 79516281 -62755163 + AT_rich Low_complexity Low_complexity 1 23 0 2160 114 21 30 chr9 79517022 79517356 -62754088 + L1MA1 LINE L1 5972 6302 0 549 267 148 14 chr9 79519308 79519518 -62751926 + MIR SINE MIR 16 253 -9 482 109 0 40 chr9 79520238 79520339 -62751105 + (TCCC)n Simple_repeat Simple_repeat 3 99 0 371 324 27 9 chr9 79520463 79520574 -62750870 - L2 LINE L2 0 3272 3160 2155 121 0 0 chr9 79520883 79521165 -62750279 + AluSx SINE Alu 1 282 -30 381 43 0 0 chr9 79521168 79521215 -62750229 + (CA)n Simple_repeat Simple_repeat 2 48 0 236 239 56 112 chr9 79521301 79521498 -62749946 + L2 LINE L2 2869 3054 -218 534 252 79 87 chr9 79521592 79521699 -62749745 - LTR33 LTR ERVL -2 519 413 2457 67 0 3 chr9 79521699 79521999 -62749445 + AluY SINE Alu 7 305 -6 534 252 79 87 chr9 79521999 79522325 -62749119 - LTR33 LTR ERVL -108 413 27 289 282 162 21 chr9 79522483 79522724 -62748720 + MLT1J LTR MaLR 233 507 -4 209 244 22 0 chr9 79522774 79522819 -62748625 + L2 LINE L2 3136 3181 -91 180 139 0 28 chr9 79523593 79523629 -62747815 + MIR SINE MIR 75 109 -153 200 309 59 0 chr9 79524436 79524504 -62746940 - L2 LINE L2 0 3313 3242 186 200 0 0 chr9 79527216 79527246 -62744198 + (TA)n Simple_repeat Simple_repeat 2 31 -35 2184 105 3 0 chr9 79527246 79527532 -62743912 + AluSx SINE Alu 1 287 -25 186 200 0 0 chr9 79527532 79527566 -62743878 + (TA)n Simple_repeat Simple_repeat 30 66 0 2124 126 10 3 chr9 79528645 79528939 -62742505 - AluSx SINE Alu -16 296 1 182 152 0 0 chr9 79529459 79529492 -62741952 + L2 LINE L2 3236 3268 -4 1624 179 19 6 chr9 79529920 79530227 -62741217 + MLT1C LTR MaLR 1 311 -156 1802 167 101 27 chr9 79530227 79530552 -62740892 + MSTB LTR MaLR 1 357 -69 2325 62 0 17 chr9 79530552 79530843 -62740601 - AluY SINE Alu -3 308 23 1802 167 101 27 chr9 79530843 79530882 -62740562 + MSTB LTR MaLR 357 392 -34 1099 139 6 6 chr9 79530887 79531053 -62740391 + MLT1C LTR MaLR 302 467 0 588 277 58 66 chr9 79531800 79532179 -62739265 - L2 LINE L2 -4 3309 2934 180 77 0 0 chr9 79532667 79532693 -62738751 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2073 114 9 22 chr9 79532873 79533190 -62738254 - AluSq SINE Alu 0 313 1 267 327 90 24 chr9 79534604 79534815 -62736629 - MIR SINE MIR -6 256 32 618 189 0 0 chr9 79534912 79535007 -62736437 + FLAM_A SINE Alu 1 95 -47 492 238 60 30 chr9 79535791 79535959 -62735485 - Charlie8 DNA MER1_type -2181 236 64 2068 144 0 3 chr9 79536390 79536689 -62734755 + AluSx SINE Alu 1 298 -14 820 279 26 17 chr9 79536764 79536997 -62734447 + MIR SINE MIR 11 245 -17 417 20 0 0 chr9 79537506 79537556 -62733888 + (CA)n Simple_repeat Simple_repeat 2 51 0 245 234 65 13 chr9 79537952 79538029 -62733415 + MIR3 SINE MIR 117 197 -11 767 241 87 37 chr9 79539278 79539351 -62732093 - MIR SINE MIR -2 260 192 857 221 0 13 chr9 79539351 79539505 -62731939 - FRAM SINE Alu -14 152 1 767 241 87 37 chr9 79539505 79539672 -62731772 - MIR SINE MIR -70 192 8 463 297 75 38 chr9 79539677 79539889 -62731555 - MIR SINE MIR -17 245 26 253 257 43 29 chr9 79539894 79539964 -62731480 - L2 LINE L2 -34 3238 3168 1360 219 42 62 chr9 79540211 79540644 -62730800 - MER63B DNA MER1_type -4 432 9 2369 100 0 0 chr9 79540786 79541096 -62730348 + AluSg SINE Alu 1 310 0 687 237 23 17 chr9 79541101 79541274 -62730170 + LTR33A LTR ERVL 350 523 0 1441 212 10 14 chr9 79541745 79542042 -62729402 + AluJo SINE Alu 2 297 -15 21 36 0 0 chr9 79543255 79543283 -62728161 + AT_rich Low_complexity Low_complexity 1 28 0 4306 130 53 16 chr9 79543833 79544564 -62726880 + L1MA4 LINE L1 5538 6295 -5 186 355 26 0 chr9 79544709 79544785 -62726659 - L2 LINE L2 -9 3304 3227 437 265 218 7 chr9 79544932 79545079 -62726365 - MER5A DNA MER1_type 0 189 12 195 42 0 0 chr9 79545397 79545421 -62726023 + (GAA)n Simple_repeat Simple_repeat 2 25 0 1565 148 0 21 chr9 79547259 79547502 -62723942 + L1MC1 LINE L1 6096 6333 0 2251 170 36 81 chr9 79548025 79548482 -62722962 + MLT1D LTR MaLR 1 432 -73 2411 116 40 8 chr9 79548482 79548835 -62722609 + THE1B LTR MaLR 1 364 0 2251 170 36 81 chr9 79548835 79548906 -62722538 + MLT1D LTR MaLR 432 505 0 208 271 135 10 chr9 79549259 79549355 -62722089 - L3 LINE CR1 -9 1568 1461 360 358 45 0 chr9 79550964 79551140 -62720304 - MIR SINE MIR -8 254 71 1554 152 36 60 chr9 79552024 79552326 -62719118 + AluSx SINE Alu 1 295 -17 421 253 56 12 chr9 79552906 79553068 -62718376 - MLT1L LTR MaLR 0 615 447 484 291 76 10 chr9 79553165 79553454 -62717990 - MLT1L LTR MaLR -299 316 9 848 150 58 77 chr9 79553524 79553731 -62717713 + MER20 DNA MER1_type 17 219 0 277 231 0 15 chr9 79554871 79554936 -62716508 + MLT1I LTR MaLR 346 409 0 238 314 20 78 chr9 79554989 79555091 -62716353 + MIR SINE MIR 6 101 -161 254 306 24 0 chr9 79556606 79556691 -62714753 - MIR3 SINE MIR -6 202 116 619 350 93 0 chr9 79556705 79557016 -62714428 + L3 LINE CR1 940 1279 -298 634 332 57 4 chr9 79557166 79557431 -62714013 + L3 LINE CR1 1298 1576 -1 345 319 145 7 chr9 79557981 79558119 -62713325 - MIR SINE MIR -104 158 2 1111 251 168 36 chr9 79558208 79558739 -62712705 + MLT2F LTR ERVL 3 603 -60 1960 110 62 52 chr9 79558911 79559219 -62712225 - AluSq SINE Alu -2 311 1 670 233 32 48 chr9 79559394 79559583 -62711861 + MIR SINE MIR 36 221 -41 180 0 0 0 chr9 79559772 79559792 -62711652 + (TC)n Simple_repeat Simple_repeat 2 21 0 1917 115 54 0 chr9 79559792 79560070 -62711374 - AluSx SINE Alu -19 293 1 302 153 17 0 chr9 79560592 79560651 -62710793 + T-rich Low_complexity Low_complexity 4 63 0 2110 96 0 4 chr9 79561903 79562183 -62709261 + AluY SINE Alu 3 281 -30 342 0 0 0 chr9 79562183 79562221 -62709223 + (CA)n Simple_repeat Simple_repeat 1 38 0 522 194 43 7 chr9 79562346 79562485 -62708959 + MER53 DNA DNA 4 147 -42 38 75 0 0 chr9 79562494 79562574 -62708870 + AT_rich Low_complexity Low_complexity 1 80 0 247 139 0 0 chr9 79562579 79562622 -62708822 + MER53 DNA DNA 144 186 -3 230 293 117 117 chr9 79563353 79563705 -62707739 - L2 LINE L2 -1 3271 2920 276 296 92 65 chr9 79563801 79563849 -62707595 - L2 LINE L2 -493 2821 2776 2221 109 0 0 chr9 79563849 79564163 -62707281 - AluSx SINE Alu 0 314 1 276 296 92 65 chr9 79564163 79564444 -62707000 - L2 LINE L2 -538 2776 2473 1721 201 3 0 chr9 79564444 79564742 -62706702 - AluJb SINE Alu -13 299 1 276 296 92 65 chr9 79564742 79564842 -62706602 - L2 LINE L2 -841 2473 2377 229 250 0 15 chr9 79565117 79565185 -62706259 - MLT1L LTR MaLR 0 615 549 24 0 0 0 chr9 79565190 79565214 -62706230 + AT_rich Low_complexity Low_complexity 1 24 0 2221 113 0 16 chr9 79565581 79565892 -62705552 - AluSg SINE Alu -4 306 1 227 296 107 19 chr9 79567488 79567647 -62703797 + LTR50 LTR ERVL 22 194 -601 342 186 47 12 chr9 79567913 79567999 -62703445 + LTR33A LTR ERVL 421 509 -14 298 387 54 1 chr9 79568264 79568434 -62703010 + MIR SINE MIR 16 192 -66 215 266 16 97 chr9 79568640 79568764 -62702680 + MIR SINE MIR 74 187 -75 232 318 144 50 chr9 79569293 79569404 -62702040 + L2 LINE L2 2873 2972 -341 2337 105 0 3 chr9 79569404 79569708 -62701736 - AluSp SINE Alu -10 303 1 232 318 144 50 chr9 79569708 79569999 -62701445 + L2 LINE L2 2972 3313 0 389 235 98 0 chr9 79570331 79570433 -62701011 + MER58A DNA MER1_type 30 141 0 319 167 17 0 chr9 79570433 79570492 -62700952 + MER58A DNA MER1_type 165 224 0 344 305 59 43 chr9 79570929 79571125 -62700319 - MIR SINE MIR -22 240 37 411 311 122 8 chr9 79573453 79573634 -62697810 - MIR SINE MIR -12 250 51 423 280 84 63 chr9 79573721 79573960 -62697484 + L2 LINE L2 3059 3302 -11 946 306 116 38 chr9 79574121 79574732 -62696712 - L3 LINE CR1 -3 1574 916 224 322 56 35 chr9 79574749 79574892 -62696552 - L2 LINE L2 0 3313 3168 2211 111 0 7 chr9 79575538 79575867 -62695577 + AluSx SINE Alu 1 312 0 724 355 64 8 chr9 79576247 79576706 -62694738 - L3 LINE CR1 -666 911 355 1544 190 67 24 chr9 79577011 79577385 -62694059 + MLT1B LTR MaLR 1 390 0 1782 208 84 60 chr9 79578036 79578641 -62692803 - MLT1E2 LTR MaLR -6 620 1 425 289 120 54 chr9 79578740 79579090 -62692354 - L2 LINE L2 -3 3310 2938 325 230 40 0 chr9 79579100 79579174 -62692270 - MIR SINE MIR -54 208 132 2238 171 36 7 chr9 79579213 79579538 -62691906 - Tigger2a DNA MER2_type -2275 433 92 189 0 0 0 chr9 79579538 79579559 -62691885 + (GGA)n Simple_repeat Simple_repeat 2 22 0 2238 171 36 7 chr9 79579559 79579654 -62691790 - Tigger2a DNA MER2_type -2616 92 1 258 271 57 96 chr9 79580110 79580287 -62691157 + L2 LINE L2 2921 3090 -182 232 91 13 208 chr9 79580291 79580328 -62691116 - MER5B DNA MER1_type -110 68 52 2036 120 3 30 chr9 79580328 79580629 -62690815 + AluSx SINE Alu 5 297 -15 232 91 13 208 chr9 79580629 79580668 -62690776 - MER5B DNA MER1_type -126 52 7 420 169 76 59 chr9 79581406 79581524 -62689920 + MLT1I LTR MaLR 281 400 -9 25 31 0 0 chr9 79582900 79582932 -62688512 + AT_rich Low_complexity Low_complexity 1 32 0 602 257 88 81 chr9 79583593 79583740 -62687704 - L1MC/D LINE L1 -2059 5749 5604 2209 116 10 0 chr9 79583740 79584042 -62687402 + AluSp SINE Alu 1 305 -8 602 257 88 81 chr9 79584042 79584373 -62687071 - L1MC/D LINE L1 -2204 5604 5268 408 319 52 28 chr9 79584456 79584704 -62686740 - L1MC/D LINE L1 -908 5238 4985 198 331 186 35 chr9 79585032 79585177 -62686267 - MER5B DNA MER1_type -8 170 4 479 46 0 0 chr9 79585400 79585465 -62685979 + AluSc SINE Alu 234 298 -11 180 261 67 75 chr9 79585828 79585962 -62685482 + L2 LINE L2 2837 2969 -345 642 265 92 74 chr9 79586383 79586775 -62684669 + L1MEd LINE L1 674 1072 -5047 275 280 10 10 chr9 79586968 79587068 -62684376 - MERVL LTR ERVL -369 5116 5017 308 284 49 6 chr9 79587317 79587479 -62683965 + L1MEd LINE L1 2160 2328 -3801 6761 58 14 5 chr9 79587772 79589378 -62682066 + L1PA7 LINE L1 4530 6143 -11 1673 256 140 45 chr9 79589396 79590517 -62680927 + HAL1 LINE L1 1182 2408 -99 382 343 116 11 chr9 79590708 79591035 -62680409 + L1 LINE L1 3982 4337 -1809 16684 27 2 0 chr9 79591035 79593127 -62678317 - L1PA3 LINE L1 -1417 4729 2634 7649 28 0 0 chr9 79593127 79594572 -62676872 + L1PA3 LINE L1 4708 6152 -3 920 193 55 20 chr9 79594676 79594878 -62676566 - MER6B DNA MER2_type -1 209 1 499 284 107 12 chr9 79594921 79595164 -62676280 + MER57A LTR ERV1 134 399 -4 1492 199 94 25 chr9 79595174 79595576 -62675868 + MLT1D LTR MaLR 76 505 0 5016 158 50 30 chr9 79595697 79597657 -62673787 - L1MA8 LINE L1 -5 6286 4292 31 0 0 0 chr9 79597954 79597985 -62673459 + AT_rich Low_complexity Low_complexity 1 31 0 4115 102 95 37 chr9 79598555 79599279 -62672165 - L1PA16 LINE L1 -9 6157 5392 * 7059 215 25 69 chr9 79599262 79600870 -62670574 - L1 LINE L1 -1406 4740 3282 2053 153 0 3 chr9 79600870 79601177 -62670267 - AluSx SINE Alu -6 306 1 7059 215 25 69 chr9 79601177 79602046 -62669398 - L1 LINE L1 -2864 3282 2376 209 255 0 0 chr9 79603344 79603391 -62668053 + L3b LINE CR1 1528 1574 -9 576 286 33 0 chr9 79603538 79603720 -62667724 + MIR SINE MIR 29 216 -46 839 273 36 51 chr9 79604028 79604361 -62667083 - MLT2F LTR ERVL -335 328 1 356 279 142 40 chr9 79604387 79604634 -62666810 + L2 LINE L2 3033 3304 -9 2151 130 16 0 chr9 79604693 79605000 -62666444 + AluSx SINE Alu 1 312 0 522 281 159 15 chr9 79605113 79605447 -62665997 - MLT1J2 LTR MaLR 0 450 69 476 258 159 18 chr9 79605545 79605708 -62665736 - MIR SINE MIR -74 188 3 371 358 116 9 chr9 79606921 79607153 -62664291 + MIR SINE MIR 4 260 -2 202 28 28 28 chr9 79608973 79609009 -62662435 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 188 331 24 39 chr9 79609705 79609832 -62661612 - MIR SINE MIR -10 252 128 2890 89 36 25 chr9 79612675 79613114 -62658330 - MLT2A1 LTR ERVL 0 444 1 600 268 84 6 chr9 79613265 79613444 -62658000 + L2 LINE L2 2215 2407 -907 310 216 27 0 chr9 79613496 79613570 -62657874 - L2 LINE L2 -781 2533 2458 341 343 140 17 chr9 79617536 79617772 -62653672 + L2 LINE L2 3004 3268 -4 180 291 73 0 chr9 79617787 79617842 -62653602 - MIR SINE MIR -7 255 197 954 161 58 39 chr9 79618329 79618534 -62652910 + MER3 DNA MER1_type 1 209 0 228 238 0 32 chr9 79618628 79618691 -62652753 - MER103 DNA DNA -35 131 71 183 42 0 0 chr9 79621375 79621399 -62650045 + (TTA)n Simple_repeat Simple_repeat 1 24 0 302 313 165 0 chr9 79621557 79621733 -62649711 + MLT1K LTR MaLR 259 463 -125 297 237 11 32 chr9 79621906 79621999 -62649445 - L1MC4 LINE L1 0 8042 7841 241 172 31 0 chr9 79622073 79622137 -62649307 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 388 252 141 69 chr9 79622200 79622462 -62648982 - L1MC4 LINE L1 -207 7835 7555 2092 132 63 38 chr9 79622479 79622905 -62648539 - L1MA5 LINE L1 -3 6297 5861 304 156 65 0 chr9 79623020 79623097 -62648347 - L1MC5 LINE L1 -608 7353 7272 384 229 0 43 chr9 79623233 79623421 -62648023 + CT-rich Low_complexity Low_complexity 1 180 0 629 116 11 63 chr9 79623530 79623720 -62647724 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 * 724 118 30 55 chr9 79623687 79623973 -62647471 + C-rich Low_complexity Low_complexity 1 278 0 581 305 27 4 chr9 79623975 79624231 -62647213 - L1MEc LINE L1 -4693 1703 1442 2105 120 0 7 chr9 79624278 79624570 -62646874 - AluSx SINE Alu -18 294 5 209 268 0 28 chr9 79624879 79624950 -62646494 + CT-rich Low_complexity Low_complexity 3 71 0 1404 114 90 0 chr9 79624983 79625194 -62646250 + MER30 DNA MER1_type 1 230 0 180 0 0 0 chr9 79626738 79626758 -62644686 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1207 228 70 75 chr9 79627075 79627544 -62643900 - MLT1C LTR MaLR 0 467 1 861 150 75 12 chr9 79627716 79627876 -62643568 + AluJo SINE Alu 87 256 -56 2087 124 0 0 chr9 79627904 79628186 -62643258 + AluSx SINE Alu 15 296 -16 1827 88 73 37 chr9 79628723 79629026 -62642418 - AluY SINE Alu 0 313 1 180 97 0 0 chr9 79629260 79629291 -62642153 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 215 0 15 chr9 79629456 79629521 -62641923 - LTR67 LTR ERVL 0 557 494 261 273 76 34 chr9 79629630 79629829 -62641615 + MLT1I LTR MaLR 84 288 -121 1366 276 49 45 chr9 79629853 79630382 -62641062 - MLT1E LTR MaLR -62 531 1 2373 235 100 5 chr9 79630875 79631504 -62639940 - ERVL LTR ERVL -589 5175 4487 1590 189 43 43 chr9 79631505 79631943 -62639501 - MLT1D LTR MaLR -64 441 4 2605 238 103 40 chr9 79631943 79632303 -62639141 - ERVL LTR ERVL -1795 3969 3633 1749 157 0 25 chr9 79632303 79632589 -62638855 + AluJb SINE Alu 31 309 -3 2605 238 103 40 chr9 79632589 79633078 -62638366 - ERVL LTR ERVL -2131 3633 3066 230 361 0 21 chr9 79633182 79633279 -62638165 + L2 LINE L2 2693 2787 -527 619 292 74 6 chr9 79633299 79633504 -62637940 + MIR SINE MIR 33 247 -15 2385 88 10 0 chr9 79633518 79633825 -62637619 - AluY SINE Alu -1 310 1 436 329 74 46 chr9 79633917 79634000 -62637444 + L2 LINE L2 2911 2990 -323 1029 306 56 14 chr9 79634000 79634445 -62636999 + LTR16B LTR ERVL 1 464 0 436 329 74 46 chr9 79634445 79634753 -62636691 + L2 LINE L2 2990 3313 0 180 111 0 0 chr9 79636032 79636059 -62635385 + (A)n Simple_repeat Simple_repeat 1 27 0 248 293 121 45 chr9 79637258 79637456 -62633988 + MIR SINE MIR 1 213 -49 1068 209 37 4 chr9 79637611 79637855 -62633589 + L1MD1 LINE L1 5752 6003 -239 446 294 33 27 chr9 79639337 79639521 -62631923 + MIR SINE MIR 22 206 -56 2227 122 0 0 chr9 79640101 79640397 -62631047 - AluSx SINE Alu -16 296 1 2216 142 0 0 chr9 79640516 79640825 -62630619 + AluSx SINE Alu 1 309 -3 387 260 73 83 chr9 79641008 79641200 -62630244 + MIR SINE MIR 17 206 -56 1237 112 44 10 chr9 79641202 79641407 -62630037 - Tigger1 DNA MER2_type 0 2418 2207 993 147 0 0 chr9 79641401 79641557 -62629887 - Tigger1 DNA MER2_type -2261 157 2 * 1980 218 101 31 chr9 79641718 79642301 -62629143 + MLT1E2 LTR MaLR 3 626 0 342 0 0 0 chr9 79642510 79642548 -62628896 + (CA)n Simple_repeat Simple_repeat 2 39 0 265 250 15 15 chr9 79642629 79642697 -62628747 - MIR SINE MIR -58 150 83 187 313 0 62 chr9 79643020 79643084 -62628360 + L3 LINE CR1 1493 1552 -25 1509 195 65 57 chr9 79643630 79644015 -62627429 - MLT1B LTR MaLR 0 390 3 2187 118 20 9 chr9 79644080 79644427 -62627017 + THE1A LTR MaLR 3 353 -2 11513 94 15 1 chr9 79644429 79645987 -62625457 + THE1A-int LTR MaLR 1 1580 0 2323 107 8 36 chr9 79645987 79646223 -62625221 + THE1A LTR MaLR 1 225 -130 2421 75 0 3 chr9 79646223 79646528 -62624916 + AluY SINE Alu 3 306 -5 2323 107 8 36 chr9 79646528 79646656 -62624788 + THE1A LTR MaLR 225 355 0 501 265 143 0 chr9 79647245 79647434 -62624010 + MER20 DNA MER1_type 2 217 -2 2171 103 7 13 chr9 79647472 79647773 -62623671 - AluSq SINE Alu -14 299 1 31 26 0 0 chr9 79648137 79648175 -62623269 + AT_rich Low_complexity Low_complexity 1 38 0 201 147 0 0 chr9 79649084 79649118 -62622326 + (T)n Simple_repeat Simple_repeat 1 34 0 699 262 62 14 chr9 79649416 79649706 -62621738 - HAL1 LINE L1 -722 1785 1482 26 30 0 0 chr9 79651279 79651312 -62620132 + AT_rich Low_complexity Low_complexity 1 33 0 202 250 28 14 chr9 79651326 79651398 -62620046 + CT-rich Low_complexity Low_complexity 2 74 0 280 351 54 0 chr9 79651417 79651528 -62619916 - L2 LINE L2 0 3313 3197 2007 124 72 26 chr9 79651740 79652088 -62619356 + THE1B LTR MaLR 1 364 0 206 341 103 40 chr9 79653049 79653175 -62618269 + L2 LINE L2 3133 3266 -6 239 214 83 71 chr9 79653500 79653584 -62617860 - MIR SINE MIR -93 169 85 243 292 116 36 chr9 79653814 79654064 -62617380 - L2 LINE L2 -357 2957 2688 582 273 28 23 chr9 79655754 79655930 -62615514 - MLT1I LTR MaLR 0 409 233 189 260 0 20 chr9 79656134 79656184 -62615260 - L2 LINE L2 -9 3263 3215 318 50 0 0 chr9 79656553 79656593 -62614851 + (TA)n Simple_repeat Simple_repeat 2 41 0 2209 106 0 3 chr9 79656593 79656885 -62614559 - AluSg SINE Alu -19 291 1 1077 209 158 40 chr9 79657034 79657388 -62614056 + MSTD LTR MaLR 1 396 0 451 295 118 54 chr9 79658876 79659249 -62612195 - MLT1K LTR MaLR -53 535 139 1851 109 0 26 chr9 79659996 79660286 -62611158 - AluSg SINE Alu 0 310 29 22 0 0 0 chr9 79660921 79660943 -62610501 + AT_rich Low_complexity Low_complexity 1 22 0 820 150 44 14 chr9 79661240 79661404 -62610040 - MLT1A1 LTR MaLR 0 365 217 369 263 0 0 chr9 79661450 79661545 -62609899 - MLT1A1 LTR MaLR -270 95 1 204 329 31 56 chr9 79661913 79662074 -62609370 + L2 LINE L2 2822 2978 -294 218 250 75 0 chr9 79662132 79662212 -62609232 - L2 LINE L2 -3225 89 4 540 265 15 0 chr9 79662244 79662380 -62609064 - MIR SINE MIR -121 141 4 613 244 85 94 chr9 79662699 79663051 -62608393 - MLT1H1 LTR MaLR 0 555 207 360 328 46 31 chr9 79663109 79663304 -62608140 - MLT1H1 LTR MaLR -357 198 1 538 268 84 96 chr9 79663356 79663606 -62607838 + MIR SINE MIR 2 248 -14 332 324 97 7 chr9 79663928 79664073 -62607371 + L2 LINE L2 3112 3269 -3 28 29 0 0 chr9 79664075 79664110 -62607334 + AT_rich Low_complexity Low_complexity 1 35 0 13117 199 68 31 chr9 79665110 79667702 -62603742 + L1MA6 LINE L1 1 2496 -4866 1762 154 48 38 chr9 79667702 79668073 -62603371 - THE1C LTR MaLR 0 375 1 13117 199 68 31 chr9 79668073 79671799 -62599645 + L1MA6 LINE L1 2496 7358 -4 1696 166 35 0 chr9 79671799 79672138 -62599306 + L1MA5 LINE L1 5940 6294 -6 300 294 28 28 chr9 79672284 79672393 -62599051 - MIR3 SINE MIR -3 205 97 * 393 317 60 18 chr9 79672379 79672546 -62598898 + MIR SINE MIR 80 253 -9 189 0 0 0 chr9 79672854 79672875 -62598569 + (TA)n Simple_repeat Simple_repeat 2 22 0 1972 233 27 49 chr9 79673564 79674091 -62597353 - MLT2B1 LTR ERVL 0 520 6 23 0 0 0 chr9 79674366 79674389 -62597055 + AT_rich Low_complexity Low_complexity 1 23 0 441 306 59 13 chr9 79674389 79674581 -62596863 + MIR SINE MIR 21 216 -46 269 246 127 21 chr9 79674587 79674729 -62596715 - L1MEd LINE L1 -4972 1147 991 310 329 72 63 chr9 79674824 79675143 -62596301 - L1MEd LINE L1 -5229 890 569 2505 220 81 28 chr9 79675148 79675268 -62596176 - L1ME2 LINE L1 -3 6230 6118 2048 67 56 8 chr9 79675268 79675582 -62595862 + AluY SINE Alu 1 327 0 2505 220 81 28 chr9 79675582 79676306 -62595138 - L1ME2 LINE L1 -115 6118 5327 182 128 26 0 chr9 79676312 79676351 -62595093 + CT-rich Low_complexity Low_complexity 2 41 0 5224 93 4 25 chr9 79676462 79676926 -62594518 - L1PA13 LINE L1 -20 6143 5700 2621 30 3 0 chr9 79676926 79677229 -62594215 - AluY SINE Alu -7 304 1 5224 93 4 25 chr9 79677229 79677537 -62593907 - L1PA13 LINE L1 -463 5700 5387 4095 167 34 6 chr9 79677562 79678358 -62593086 + L1P LINE L1 4558 5375 -771 389 220 50 50 chr9 79678365 79678547 -62592897 - L1ME2 LINE L1 -965 5250 5069 2822 134 64 11 chr9 79678563 79678953 -62592491 - L1PA2 LINE L1 -713 5442 4980 6244 17 0 0 chr9 79678953 79679660 -62591784 + L1PA2 LINE L1 5442 6153 -2 2822 134 64 11 chr9 79679660 79679865 -62591579 - L1P1 LINE L1 -1175 4980 4787 1614 266 110 42 chr9 79679892 79681109 -62590335 - L1ME2 LINE L1 -4081 2315 1016 24 0 0 0 chr9 79681299 79681323 -62590121 + AT_rich Low_complexity Low_complexity 1 24 0 1843 127 15 0 chr9 79683938 79684206 -62587238 - AluSg SINE Alu -38 272 1 236 337 41 17 chr9 79686240 79686412 -62585032 - L1ME2 LINE L1 -5940 265 90 335 289 11 91 chr9 79686846 79687033 -62584411 + MIR SINE MIR 90 261 -1 205 195 0 0 chr9 79687616 79687657 -62583787 + T-rich Low_complexity Low_complexity 1 41 0 4914 152 39 1 chr9 79687881 79688755 -62582689 - L1MA7 LINE L1 -10 6281 5375 14151 202 51 12 chr9 79688766 79692689 -62578755 - L1M2 LINE L1 -743 6822 2791 242 234 0 0 chr9 79692768 79692815 -62578629 + MIR SINE MIR 216 262 0 3608 255 60 40 chr9 79692839 79692871 -62578573 - L1M2c LINE L1 -4466 1885 1855 2415 87 0 16 chr9 79692871 79693183 -62578261 + AluY SINE Alu 1 307 -4 3608 255 60 40 chr9 79693183 79693625 -62577819 - L1M2c LINE L1 -4496 1855 1423 1824 133 44 11 chr9 79693625 79693895 -62577549 - AluSx SINE Alu -33 279 1 3608 255 60 40 chr9 79693895 79695434 -62576010 - L1M2c LINE L1 -4928 1423 1 592 273 109 51 chr9 79695466 79696037 -62575407 + L1MC5 LINE L1 7311 7914 -47 453 286 53 18 chr9 79696426 79696597 -62574847 + MIR SINE MIR 43 219 -43 195 290 97 0 chr9 79696662 79696724 -62574720 - L2 LINE L2 -248 3065 2998 232 264 38 38 chr9 79697187 79697293 -62574151 + MLT1J LTR MaLR 119 224 -287 207 328 65 80 chr9 79697513 79697775 -62573669 - L2 LINE L2 -678 2636 2379 25 0 0 0 chr9 79699065 79699090 -62572354 + AT_rich Low_complexity Low_complexity 1 25 0 2394 98 0 0 chr9 79699567 79699873 -62571571 + AluSq SINE Alu 1 306 -7 5837 144 43 1 chr9 79700370 79701995 -62569449 + L1MA4A LINE L1 4615 6297 -6 303 299 67 15 chr9 79702330 79702464 -62568980 - L1ME LINE L1 -314 5850 5710 398 246 46 31 chr9 79702527 79702657 -62568787 - MLT2B1 LTR ERVL -280 134 3 2330 113 0 0 chr9 79702942 79703244 -62568200 + AluSg SINE Alu 1 302 -8 216 209 45 37 chr9 79703379 79703513 -62567931 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 * 297 185 83 6 chr9 79703477 79703687 -62567757 + (TA)n Simple_repeat Simple_repeat 1 226 0 38 75 0 0 chr9 79703612 79703692 -62567752 + AT_rich Low_complexity Low_complexity 1 80 0 * 1178 237 101 11 chr9 79703986 79704344 -62567100 + MLT1B LTR MaLR 1 390 0 2105 166 21 2 chr9 79705526 79705947 -62565497 - L1MB8 LINE L1 -205 5973 5545 229 326 21 57 chr9 79706404 79706545 -62564899 + MIR3 SINE MIR 2 137 -71 275 302 84 28 chr9 79707712 79707891 -62563553 + MIR SINE MIR 41 229 -33 2128 105 7 7 chr9 79708485 79708779 -62562665 - AluSg1 SINE Alu -15 294 1 2109 153 39 63 chr9 79708977 79709440 -62562004 + LTR47A LTR ERVL 1 452 0 1189 278 94 31 chr9 79709646 79710071 -62561373 - MER115 DNA AcHobo 0 693 242 384 293 45 25 chr9 79710220 79710418 -62561026 - MER115 DNA AcHobo -491 202 1 186 133 0 0 chr9 79712945 79712975 -62558469 + (T)n Simple_repeat Simple_repeat 1 30 0 216 97 0 0 chr9 79713225 79713256 -62558188 + (CA)n Simple_repeat Simple_repeat 1 31 0 1450 251 88 33 chr9 79714422 79714936 -62556508 - MLT1H LTR MaLR -3 546 5 228 100 0 0 chr9 79715152 79715192 -62556252 + (C)n Simple_repeat Simple_repeat 1 40 0 182 211 42 99 chr9 79715672 79715743 -62555701 - L2 LINE L2 -1 3271 3205 3081 151 57 17 chr9 79716557 79717158 -62554286 + MER51A LTR ERV1 1 625 -9 180 293 171 32 chr9 79718447 79718570 -62552874 - L2 LINE L2 -13 3300 3161 198 318 32 0 chr9 79718631 79718694 -62552750 - MIR SINE MIR -115 93 29 266 289 0 0 chr9 79720135 79720225 -62551219 - L1MC4 LINE L1 -1339 6703 6614 197 143 48 0 chr9 79720226 79720268 -62551176 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 537 296 81 71 chr9 79720273 79720948 -62550496 + L1ME3A LINE L1 5139 5832 -338 2161 122 0 0 chr9 79720948 79721242 -62550202 + AluSx SINE Alu 1 294 -18 537 296 81 71 chr9 79721242 79721354 -62550090 + L1ME3A LINE L1 5832 5941 -229 231 175 63 16 chr9 79721399 79721462 -62549982 - MLT1G LTR MaLR -15 580 515 1370 216 63 14 chr9 79721464 79721812 -62549632 + MLT1A2 LTR MaLR 3 367 -7 507 257 92 107 chr9 79721819 79722243 -62549201 - MLT1G LTR MaLR -76 519 64 2210 132 3 0 chr9 79722243 79722553 -62548891 - AluSx SINE Alu -1 311 1 507 257 92 107 chr9 79722553 79722608 -62548836 - MLT1G LTR MaLR -531 64 10 1229 264 89 9 chr9 79722678 79723106 -62548338 - MLT1H LTR MaLR -3 546 85 618 280 235 20 chr9 79723309 79723944 -62547500 + L2 LINE L2 2531 3313 0 218 286 16 16 chr9 79724942 79725005 -62546439 - MIR SINE MIR -5 257 195 183 306 82 0 chr9 79726660 79726745 -62544699 - L2 LINE L2 -217 3096 3005 251 245 61 20 chr9 79727278 79727376 -62544068 + L1ME4a LINE L1 5561 5662 -459 321 250 111 69 chr9 79727389 79727749 -62543695 + L1ME4a LINE L1 5746 6120 -1 2255 122 0 0 chr9 79727775 79728086 -62543358 + AluSx SINE Alu 1 311 -1 445 268 10 0 chr9 79728197 79728294 -62543150 - MER5A DNA MER1_type -88 101 4 2437 220 58 26 chr9 79729388 79730184 -62541260 + MER69 DNA AcHobo 1705 2525 -1 999 177 0 30 chr9 79731131 79731334 -62540110 + AluJo SINE Alu 115 311 -1 434 302 65 0 chr9 79731416 79731555 -62539889 + MIR SINE MIR 23 170 -92 1870 129 65 9 chr9 79734499 79734824 -62536620 - MER61A LTR ERV1 0 343 1 427 283 7 1 chr9 79736371 79736498 -62534946 - MLT1I LTR MaLR -258 151 20 211 344 122 0 chr9 79736527 79736617 -62534827 - L2 LINE L2 -292 3021 2921 432 246 31 31 chr9 79736869 79736999 -62534445 + MIR SINE MIR 46 175 -87 356 327 49 12 chr9 79737141 79737303 -62534141 - L3 LINE CR1 -3 1574 1407 256 291 12 0 chr9 79737405 79737491 -62533953 + MER103 DNA DNA 34 120 -46 1650 125 55 18 chr9 79737655 79737927 -62533517 - AluSx SINE Alu -1 311 30 425 292 38 43 chr9 79738712 79738897 -62532547 + MIR3 SINE MIR 3 186 -22 239 331 89 52 chr9 79740113 79740361 -62531083 + MLT1L LTR MaLR 3 259 -356 375 23 0 0 chr9 79741182 79741226 -62530218 + (TG)n Simple_repeat Simple_repeat 2 45 0 619 49 32 73 chr9 79741226 79741608 -62529836 + (TA)n Simple_repeat Simple_repeat 1 366 0 555 61 44 56 chr9 79741621 79741801 -62529643 + (TA)n Simple_repeat Simple_repeat 2 179 0 207 183 61 12 chr9 79741865 79741947 -62529497 + (TA)n Simple_repeat Simple_repeat 2 87 0 700 330 94 81 chr9 79742041 79742616 -62528828 - L2 LINE L2 0 3272 2706 820 248 9 35 chr9 79742616 79742846 -62528598 - MER58A DNA MER1_type 0 224 1 700 330 94 81 chr9 79742846 79744125 -62527319 - L2 LINE L2 -566 2706 1362 1020 163 12 37 chr9 79744507 79744752 -62526692 + L1MB8 LINE L1 5935 6173 -5 31 0 0 0 chr9 79745168 79745199 -62526245 + AT_rich Low_complexity Low_complexity 1 31 0 381 229 164 0 chr9 79745284 79745406 -62526038 + L1MC4a LINE L1 6680 6821 -987 1750 223 75 20 chr9 79746508 79747015 -62524429 - MER90 LTR ERV1 0 614 80 28 0 0 0 chr9 79747313 79747341 -62524103 + AT_rich Low_complexity Low_complexity 1 28 0 372 257 26 18 chr9 79748089 79748202 -62523242 - MER94 DNA DNA 0 134 21 225 0 0 0 chr9 79748243 79748268 -62523176 + (A)n Simple_repeat Simple_repeat 1 25 0 458 221 83 51 chr9 79748268 79748521 -62522923 + L1MC5 LINE L1 7474 7734 -227 2507 77 0 0 chr9 79748560 79748871 -62522573 + AluY SINE Alu 1 311 0 1473 164 68 11 chr9 79748960 79749223 -62522221 - AluJo SINE Alu -12 300 23 335 292 8 15 chr9 79749381 79749511 -62521933 + L1MC4 LINE L1 7764 7892 -150 1978 218 94 27 chr9 79749544 79750110 -62521334 - MER97a DNA MER1_type? -85 809 185 2369 83 0 10 chr9 79750110 79750411 -62521033 + AluY SINE Alu 1 298 -13 1978 218 94 27 chr9 79750411 79750547 -62520897 - MER97a DNA MER1_type? -709 185 60 954 242 32 32 chr9 79750516 79750727 -62520717 - MER58 DNA MER1_type -2135 285 72 * 2732 152 43 28 chr9 79750727 79751308 -62520136 + L1MB5 LINE L1 5585 6174 0 954 242 32 32 chr9 79751308 79751381 -62520063 - MER58 DNA MER1_type -2347 73 1 687 236 112 33 chr9 79752204 79752356 -62519088 + MIR SINE MIR 2 181 -81 1483 180 24 20 chr9 79752356 79752650 -62518794 - AluJo SINE Alu -17 295 1 687 236 112 33 chr9 79752650 79752739 -62518705 + MIR SINE MIR 181 262 0 230 265 29 0 chr9 79753066 79753134 -62518310 - MLT1L LTR MaLR -2 613 544 1667 152 3 87 chr9 79753921 79754244 -62517200 + AluJb SINE Alu 1 296 -16 403 312 50 65 chr9 79754443 79754786 -62516658 + L1M4 LINE L1 3440 3787 -2359 2034 226 88 10 chr9 79754786 79755307 -62516137 - REP3 LTR ERV 0 562 1 403 312 50 65 chr9 79755307 79755703 -62515741 + L1M4 LINE L1 3787 4168 -1978 3105 155 48 8 chr9 79755848 79756352 -62515092 + MER1A DNA MER1_type 1 524 -3 958 305 31 25 chr9 79756503 79756938 -62514506 - LTR16A LTR ERVL 0 457 15 1591 201 5 65 chr9 79757509 79757907 -62513537 - MLT1A2 LTR MaLR 0 374 1 527 279 62 12 chr9 79758670 79758914 -62512530 - L1ME LINE L1 -338 5783 5528 256 231 90 0 chr9 79758939 79759017 -62512427 - L1ME LINE L1 -652 5469 5385 2144 86 3 21 chr9 79759318 79759608 -62511836 + AluY SINE Alu 1 285 -26 30 0 0 0 chr9 79759608 79759638 -62511806 + AT_rich Low_complexity Low_complexity 1 30 0 2131 140 0 0 chr9 79760281 79760574 -62510870 - AluSx SINE Alu -15 297 5 315 0 0 0 chr9 79760763 79760798 -62510646 + (CA)n Simple_repeat Simple_repeat 2 36 0 402 267 167 13 chr9 79760835 79760985 -62510459 + MIR SINE MIR 2 174 -88 214 297 141 0 chr9 79762311 79762375 -62509069 + MIR SINE MIR 22 94 -114 727 290 44 61 chr9 79762492 79762902 -62508542 - MLT1I LTR MaLR 0 409 7 474 263 68 40 chr9 79763715 79764011 -62507433 + MLT1J LTR MaLR 111 478 -33 1327 219 0 0 chr9 79764085 79764323 -62507121 - AluJo SINE Alu -74 238 1 2004 129 0 18 chr9 79766231 79766567 -62504877 + AluSx SINE Alu 1 331 0 351 287 72 43 chr9 79766643 79766852 -62504592 - MER102a DNA MER1_type -13 317 103 354 217 17 0 chr9 79767645 79767705 -62503739 + MIR SINE MIR 20 80 -182 255 331 50 8 chr9 79767822 79767943 -62503501 - MIR SINE MIR -30 232 107 830 272 13 0 chr9 79768149 79768384 -62503060 - MER115 DNA AcHobo 0 693 456 345 370 106 0 chr9 79768524 79768713 -62502731 - MER115 DNA AcHobo -484 209 1 419 0 20 0 chr9 79769096 79769147 -62502297 + (TA)n Simple_repeat Simple_repeat 2 53 0 307 302 223 0 chr9 79770315 79770454 -62500990 - MER5A DNA MER1_type -2 187 18 741 335 8 4 chr9 79771438 79771674 -62499770 + MIR SINE MIR 5 241 -21 8194 138 10 3 chr9 79776049 79778514 -62492930 - L1MA3 LINE L1 0 7724 5242 7707 174 5 93 chr9 79778513 79780306 -62491138 - L1MA3 LINE L1 -5920 1645 11 * 1801 243 127 8 chr9 79781258 79781777 -62489667 - MLT1G LTR MaLR 0 590 10 4780 218 47 24 chr9 79781997 79784315 -62487129 - L1MDa LINE L1 -2866 3674 1274 1142 177 0 0 chr9 79784323 79784526 -62486918 + MER2 DNA MER2_type 7 209 -136 2392 247 50 35 chr9 79784636 79785775 -62485669 - L1MDa LINE L1 -5280 1260 24 2496 57 0 3 chr9 79786782 79787082 -62484362 - AluY SINE Alu -12 299 1 547 158 45 38 chr9 79787407 79787540 -62483904 - MER94 DNA DNA 0 134 1 1342 254 64 11 chr9 79787843 79788089 -62483355 - Charlie4a DNA MER1_type -1459 502 271 183 42 0 0 chr9 79788089 79788113 -62483331 + (CATAA)n Simple_repeat Simple_repeat 2 25 0 1342 254 64 11 chr9 79788113 79788318 -62483126 - Charlie4a DNA MER1_type -1690 271 27 302 308 109 19 chr9 79792832 79792988 -62478456 - L2 LINE L2 -183 3089 2920 210 360 80 0 chr9 79793094 79793194 -62478250 + L2 LINE L2 3165 3272 0 21 0 0 0 chr9 79793707 79793728 -62477716 + AT_rich Low_complexity Low_complexity 1 21 0 728 283 38 5 chr9 79793923 79794135 -62477309 - MIR SINE MIR -24 238 20 860 224 5 43 chr9 79794509 79794719 -62476725 + MIR SINE MIR 12 213 -49 345 193 0 34 chr9 79795331 79795419 -62476025 - MER97b DNA MER1_type? -877 176 92 895 245 37 12 chr9 79795464 79795752 -62475692 - L1ME3 LINE L1 -27 6135 5838 23 78 0 0 chr9 79795793 79795844 -62475600 + AT_rich Low_complexity Low_complexity 1 51 0 454 233 115 72 chr9 79795899 79796208 -62475236 - L1ME3A LINE L1 -235 5935 5592 2304 109 0 0 chr9 79796208 79796510 -62474934 - AluSx SINE Alu -10 302 1 454 233 115 72 chr9 79796510 79796544 -62474900 - L1ME3A LINE L1 -578 5592 5561 29 0 0 0 chr9 79796561 79796590 -62474854 + AT_rich Low_complexity Low_complexity 1 29 0 351 291 65 60 chr9 79796599 79796778 -62474666 - MIR3 SINE MIR -59 149 5 406 217 304 7 chr9 79797121 79797259 -62474185 + MER5A DNA MER1_type 11 189 0 351 304 48 0 chr9 79797307 79797432 -62474012 + MIR SINE MIR 91 221 -41 5371 18 0 0 chr9 79797476 79798089 -62473355 + L1PA2 LINE L1 5535 6147 -8 23 0 0 0 chr9 79798098 79798121 -62473323 + AT_rich Low_complexity Low_complexity 1 23 0 691 120 0 0 chr9 79800280 79800388 -62471056 + AluSg/x SINE Alu 201 308 -2 261 0 0 0 chr9 79800388 79800417 -62471027 + (TA)n Simple_repeat Simple_repeat 1 29 0 389 337 124 32 chr9 79800434 79800772 -62470672 - L3 LINE CR1 -1 1576 1208 453 287 61 6 chr9 79800916 79801097 -62470347 - MIR SINE MIR -6 256 66 204 245 75 0 chr9 79802578 79802631 -62468813 + L2 LINE L2 3201 3257 -15 616 352 4 4 chr9 79802885 79803115 -62468329 - MIR SINE MIR -10 252 23 929 275 41 60 chr9 79803115 79803581 -62467863 - LTR16A1 LTR ERVL 0 457 1 474 325 26 16 chr9 79803625 79803816 -62467628 + MIR SINE MIR 20 212 -50 237 361 59 25 chr9 79804090 79804209 -62467235 - MIR SINE MIR -136 126 4 274 294 147 11 chr9 79805005 79805182 -62466262 + MIR SINE MIR 6 206 -56 2047 94 0 0 chr9 79805580 79805845 -62465599 + AluSg SINE Alu 1 265 -45 2166 175 16 46 chr9 79806685 79806881 -62464563 + MSTB LTR MaLR 1 201 -225 1999 131 0 3 chr9 79806881 79807172 -62464272 + AluSx SINE Alu 1 290 -22 207 0 0 0 chr9 79807181 79807204 -62464240 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2166 175 16 46 chr9 79807204 79807432 -62464012 + MSTB LTR MaLR 209 422 -4 27272 33 3 1 chr9 79807766 79811886 -62459558 + L1PA2 LINE L1 2031 6153 -2 21 71 0 0 chr9 79812038 79812080 -62459364 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr9 79812182 79812210 -62459234 + AT_rich Low_complexity Low_complexity 1 28 0 915 191 19 5 chr9 79812424 79812633 -62458811 + L1MA4 LINE L1 6088 6299 -1 974 280 67 30 chr9 79814281 79814927 -62456517 - L1ME3A LINE L1 -30 6140 5448 216 0 0 0 chr9 79816752 79816776 -62454668 + (A)n Simple_repeat Simple_repeat 1 24 0 252 0 0 0 chr9 79816779 79816807 -62454637 + (T)n Simple_repeat Simple_repeat 1 28 0 219 314 8 127 chr9 79817385 79817447 -62453997 - L2 LINE L2 -42 3230 3187 2290 97 3 0 chr9 79817447 79817755 -62453689 - AluSc SINE Alu 0 309 1 219 314 8 127 chr9 79817755 79817810 -62453634 - L2 LINE L2 -85 3187 3127 26 0 0 0 chr9 79817896 79817922 -62453522 + AT_rich Low_complexity Low_complexity 1 26 0 1950 145 66 3 chr9 79818524 79818889 -62452555 - MLT1B LTR MaLR 0 390 3 1186 131 18 61 chr9 79819852 79820081 -62451363 + MER20 DNA MER1_type 1 219 0 1220 199 18 4 chr9 79820368 79820594 -62450850 - AluJo SINE Alu -83 229 1 2641 212 19 76 chr9 79820988 79821786 -62449658 + L1MB7 LINE L1 5433 6184 0 361 120 0 0 chr9 79822094 79822144 -62449300 - 5S rRNA rRNA -71 50 1 2270 111 0 0 chr9 79822501 79822798 -62448646 - AluSq SINE Alu -16 297 1 387 0 0 0 chr9 79823272 79823315 -62448129 + (TG)n Simple_repeat Simple_repeat 1 43 0 189 0 0 0 chr9 79823317 79823338 -62448106 + (GA)n Simple_repeat Simple_repeat 2 22 0 184 301 178 0 chr9 79823366 79823439 -62448005 + MIR SINE MIR 18 103 -159 1045 279 51 51 chr9 79823753 79824065 -62447379 + MLT1H1 LTR MaLR 183 497 -58 2480 55 0 19 chr9 79824065 79824372 -62447072 - AluY SINE Alu -10 301 1 1045 279 51 51 chr9 79824372 79824432 -62447012 + MLT1H1 LTR MaLR 496 555 0 189 121 0 0 chr9 79824507 79824540 -62446904 + (TAA)n Simple_repeat Simple_repeat 1 33 0 417 275 202 0 chr9 79824697 79824875 -62446569 - MIR SINE MIR -13 249 36 394 258 44 57 chr9 79826230 79826389 -62445055 + MIR SINE MIR 98 254 -8 436 314 101 19 chr9 79827871 79828078 -62443366 + MIR SINE MIR 20 243 -19 285 231 24 7 chr9 79828247 79828340 -62443104 + MIR SINE MIR 48 142 -66 2285 116 0 0 chr9 79828441 79828751 -62442693 + AluSg SINE Alu 1 310 0 575 337 47 17 chr9 79829766 79830128 -62441316 + L1ME1 LINE L1 5482 5854 -312 503 272 130 31 chr9 79830530 79830784 -62440660 - MLT1K LTR MaLR 0 588 310 206 330 88 0 chr9 79831172 79831263 -62440181 + L3 LINE CR1 1172 1270 -307 316 308 58 64 chr9 79834117 79834273 -62437171 + MIR3 SINE MIR 6 160 -48 1116 207 59 3 chr9 79834462 79834766 -62436678 - L1M4 LINE L1 -3149 2997 2677 201 393 0 0 chr9 79835406 79835490 -62435954 + MIR SINE MIR 66 149 -113 203 262 0 0 chr9 79835941 79835983 -62435461 + polypyrimidine Low_complexity Low_complexity 1 42 0 203 275 163 0 chr9 79836069 79836149 -62435295 - L2 LINE L2 0 3313 3221 558 267 74 14 chr9 79836174 79836391 -62435053 - L2 LINE L2 -420 2894 2665 636 329 44 31 chr9 79836411 79836730 -62434714 + MLT1I LTR MaLR 53 375 -34 251 177 177 0 chr9 79837686 79837748 -62433696 + MIR SINE MIR 162 234 -28 314 235 0 10 chr9 79837776 79837874 -62433570 + CT-rich Low_complexity Low_complexity 3 99 0 1071 102 63 10 chr9 79837889 79838094 -62433350 - L1MA8 LINE L1 -7 6284 6069 297 213 27 53 chr9 79838281 79838356 -62433088 - MER5B DNA MER1_type -1 177 105 226 204 0 20 chr9 79839092 79839141 -62432303 - L2 LINE L2 -8 3264 3217 230 267 67 0 chr9 79839873 79839933 -62431511 + MER91C DNA MER1_type 31 94 -46 243 307 23 0 chr9 79840242 79840330 -62431114 - L1MC4 LINE L1 -1339 6703 6614 395 238 28 14 chr9 79841475 79841594 -62429850 + MLT1J2 LTR MaLR 65 167 -283 229 179 36 18 chr9 79841711 79841767 -62429677 + MLT1J2 LTR MaLR 376 432 -18 1175 181 42 80 chr9 79842081 79842417 -62429027 + MLT1D LTR MaLR 183 505 0 474 243 53 86 chr9 79842438 79842681 -62428763 - L1ME1 LINE L1 -151 6015 5781 225 0 0 0 chr9 79842752 79842777 -62428667 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 917 266 25 0 chr9 79842806 79843047 -62428397 - L1ME1 LINE L1 -396 5770 5524 314 300 23 0 chr9 79843553 79843683 -62427761 + L1ME LINE L1 5692 5824 -297 221 309 24 12 chr9 79843932 79844016 -62427428 + L2 LINE L2 2183 2267 -1047 305 276 184 32 chr9 79844238 79844455 -62426989 + L2 LINE L2 2395 2644 -670 535 341 111 32 chr9 79844779 79845441 -62426003 + L1M4 LINE L1 2984 3722 -2424 1494 159 31 59 chr9 79845441 79845750 -62425694 + AluJo SINE Alu 2 302 0 535 341 111 32 chr9 79845750 79845887 -62425557 + L1M4 LINE L1 3722 3847 -2299 21 36 0 0 chr9 79846103 79846131 -62425313 + AT_rich Low_complexity Low_complexity 1 28 0 1817 297 151 26 chr9 79846425 79847332 -62424112 - L2 LINE L2 -885 2429 1410 726 327 75 29 chr9 79847531 79847916 -62423528 + L2 LINE L2 2911 3313 0 23 0 0 0 chr9 79848488 79848511 -62422933 + AT_rich Low_complexity Low_complexity 1 23 0 394 206 0 0 chr9 79849143 79849216 -62422228 - MER5A DNA MER1_type -86 103 31 1710 146 69 39 chr9 79849308 79849672 -62421772 + THE1C LTR MaLR 1 375 0 9516 131 14 44 chr9 79849674 79851301 -62420143 + THE1C-int LTR MaLR 3 1580 0 1769 150 55 38 chr9 79851304 79851670 -62419774 + THE1C LTR MaLR 4 375 0 1383 245 47 20 chr9 79852432 79852850 -62418594 + MER89 LTR ERV1 31 559 0 6668 195 51 52 chr9 79852850 79853841 -62417603 + MER89-int LTR ERV1 1 1098 -5703 1447 191 56 42 chr9 79853841 79854198 -62417246 + MER47A DNA MER2_type 1 362 -4 6668 195 51 52 chr9 79854198 79854968 -62416476 + MER89-int LTR ERV1 1098 1867 -4934 345 75 0 0 chr9 79854979 79855032 -62416412 + (TC)n Simple_repeat Simple_repeat 2 54 0 754 128 0 48 chr9 79855049 79855174 -62416270 + FRAM SINE Alu 34 152 -24 185 220 0 10 chr9 79855194 79855294 -62416150 + (TA)n Simple_repeat Simple_repeat 1 99 0 319 283 11 0 chr9 79855295 79855387 -62416057 + L1MC4 LINE L1 6608 6700 -1342 303 249 45 20 chr9 79855301 79855439 -62416005 - L1MC4 LINE L1 -1339 6983 1942 * 388 97 28 80 chr9 79855445 79855736 -62415708 + (TATAA)n Simple_repeat Simple_repeat 1 275 0 265 250 0 10 chr9 79855744 79855840 -62415604 + (TA)n Simple_repeat Simple_repeat 1 95 0 1592 210 0 0 chr9 79855840 79856126 -62415318 - AluJo SINE Alu -24 288 3 3329 177 24 22 chr9 79856127 79856799 -62414645 + MER89-int LTR ERV1 1859 2531 -4270 25 0 0 0 chr9 79858110 79858135 -62413309 + AT_rich Low_complexity Low_complexity 1 25 0 246 62 0 0 chr9 79858182 79858214 -62413230 + (TG)n Simple_repeat Simple_repeat 2 33 0 296 318 9 9 chr9 79858500 79858607 -62412837 + CT-rich Low_complexity Low_complexity 2 108 0 195 42 0 0 chr9 79859323 79859347 -62412097 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 3568 124 22 117 chr9 79859516 79860319 -62411125 - LTR8A LTR ERV1 0 727 1 3755 131 2 10 chr9 79860575 79860947 -62410497 - L1PB1 LINE L1 -1 6150 5783 456 19 0 0 chr9 79860947 79861000 -62410444 + (TA)n Simple_repeat Simple_repeat 2 54 0 3755 131 2 10 chr9 79861000 79861232 -62410212 - L1PB1 LINE L1 -368 5783 5551 2096 164 23 60 chr9 79861255 79861590 -62409854 + MER47B DNA MER2_type 1 318 -2005 1616 167 37 4 chr9 79861590 79861860 -62409584 - AluJo SINE Alu -31 281 3 2096 164 23 60 chr9 79861860 79861958 -62409486 + MER47B DNA MER2_type 318 418 0 2172 200 92 6 chr9 79862049 79862518 -62408926 - LTR22 LTR ERVK 0 509 1 378 0 0 0 chr9 79863876 79863918 -62407526 + (TG)n Simple_repeat Simple_repeat 2 43 0 1816 164 73 6 chr9 79863937 79864279 -62407165 - MLT1A1 LTR MaLR 0 365 1 1178 160 40 0 chr9 79864286 79864486 -62406958 - MLT1A1-int LTR MaLR -7 1728 1521 21 36 0 0 chr9 79865001 79865029 -62406415 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 79865073 79865096 -62406348 + AT_rich Low_complexity Low_complexity 1 23 0 279 266 83 79 chr9 79865388 79865678 -62405766 + HAL1 LINE L1 2175 2465 -42 21 57 0 0 chr9 79865685 79865720 -62405724 + AT_rich Low_complexity Low_complexity 1 35 0 356 305 128 0 chr9 79866027 79866168 -62405276 + MIR SINE MIR 40 198 -64 327 192 0 39 chr9 79867380 79867458 -62403986 + MER116 DNA Mariner 5 79 -1 1040 262 93 6 chr9 79868198 79868511 -62402933 + L3 LINE CR1 948 1287 -290 239 324 120 9 chr9 79868802 79868910 -62402534 + MER91A DNA MER1_type 29 148 -48 340 371 14 35 chr9 79868910 79869053 -62402391 - L2 LINE L2 -17 3255 3116 1361 225 24 50 chr9 79869480 79869858 -62401586 - MLT1A2 LTR MaLR -4 370 3 1171 320 18 18 chr9 79871584 79872037 -62399407 - LTR16B LTR ERVL -6 458 6 23 0 0 0 chr9 79872105 79872128 -62399316 + AT_rich Low_complexity Low_complexity 1 23 0 1310 262 108 13 chr9 79872408 79872797 -62398647 - LTR16A LTR ERVL -9 441 16 310 330 41 56 chr9 79872909 79873106 -62398338 - L1ME LINE L1 -600 5521 5328 406 263 86 56 chr9 79873365 79873563 -62397881 - L1ME3A LINE L1 -5 6165 5962 365 312 102 75 chr9 79873569 79873917 -62397527 + L2 LINE L2 2307 2669 -645 567 161 161 72 chr9 79873917 79874110 -62397334 + MER63A DNA MER1_type 1 210 0 365 312 102 75 chr9 79874110 79874162 -62397282 + L2 LINE L2 2669 2718 -596 22 56 0 0 chr9 79874338 79874374 -62397070 + AT_rich Low_complexity Low_complexity 1 36 0 348 324 90 22 chr9 79875523 79875840 -62395604 - LTR16A1 LTR ERVL -47 410 86 182 273 156 39 chr9 79876402 79876479 -62394965 - L2 LINE L2 -2 3311 3226 233 322 80 75 chr9 79876950 79877189 -62394255 - MIR SINE MIR -18 244 5 30 27 0 0 chr9 79877207 79877244 -62394200 + AT_rich Low_complexity Low_complexity 1 37 0 225 216 14 81 chr9 79877937 79878011 -62393433 - L2 LINE L2 -9 3263 3195 215 354 122 42 chr9 79878216 79878643 -62392801 + L2 LINE L2 2517 2977 -337 1934 144 58 19 chr9 79879010 79879371 -62392073 - THE1C LTR MaLR 0 375 1 9125 133 59 10 chr9 79879371 79880877 -62390567 - THE1C-int LTR MaLR 0 1580 1 2124 161 13 11 chr9 79880879 79881251 -62390193 - THE1C LTR MaLR -2 373 1 1353 114 159 0 chr9 79881255 79881482 -62389962 - THE1A-int LTR MaLR -4 1576 1314 8233 124 35 20 chr9 79881619 79882343 -62389101 - THE1A-int LTR MaLR -290 1290 578 2726 82 3 3 chr9 79882343 79882698 -62388746 - THE1A LTR MaLR 0 355 1 8233 124 35 20 chr9 79882698 79882996 -62388448 - THE1A-int LTR MaLR -1002 578 244 2496 181 43 60 chr9 79882996 79883642 -62387802 + MER41B LTR ERV1 1 635 0 8233 124 35 20 chr9 79883642 79883890 -62387554 - THE1A-int LTR MaLR -1336 244 1 1946 149 35 22 chr9 79883890 79884260 -62387184 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr9 79884405 79884428 -62387016 + AT_rich Low_complexity Low_complexity 1 23 0 680 285 138 52 chr9 79885528 79886008 -62385436 - LTR33A LTR ERVL -2 521 1 224 120 20 0 chr9 79887225 79887275 -62384169 + A-rich Low_complexity Low_complexity 5 55 0 28 29 0 0 chr9 79888863 79888898 -62382546 + AT_rich Low_complexity Low_complexity 1 35 0 342 294 12 0 chr9 79888915 79889000 -62382444 - MIR SINE MIR -21 241 156 185 62 0 31 chr9 79889027 79889059 -62382385 + (TATAA)n Simple_repeat Simple_repeat 4 34 0 205 254 63 16 chr9 79889111 79889174 -62382270 - L2 LINE L2 -5 3267 3202 192 344 0 16 chr9 79889351 79889412 -62382032 - L2 LINE L2 -211 3061 3002 274 348 33 51 chr9 79889509 79889785 -62381659 - L2 LINE L2 -450 2864 2594 360 290 36 14 chr9 79889789 79889927 -62381517 - MARNA DNA Mariner -395 191 51 766 247 69 34 chr9 79891092 79891547 -62379897 - MLT1G LTR MaLR -3 587 69 1784 186 22 38 chr9 79891547 79891918 -62379526 + MLT1A1 LTR MaLR 1 365 0 766 247 69 34 chr9 79891918 79891990 -62379454 - MLT1G LTR MaLR -521 69 1 325 238 5 31 chr9 79892984 79893094 -62378350 + L1ME LINE L1 5690 5803 -318 391 305 197 46 chr9 79893432 79893822 -62377622 - MLT1J LTR MaLR -62 449 1 2327 304 65 21 chr9 79894220 79894771 -62376673 + L2 LINE L2 1793 2405 -909 1630 190 83 27 chr9 79894771 79895145 -62376299 + MSTD LTR MaLR 1 395 -1 2327 304 65 21 chr9 79895145 79895544 -62375900 + L2 LINE L2 2405 2785 -529 354 324 0 18 chr9 79895697 79895808 -62375636 - MER81 DNA DNA -1 113 5 2568 156 75 2 chr9 79896055 79896537 -62374907 - L1PB4 LINE L1 -8 6148 5632 3218 126 75 4 chr9 79896842 79897333 -62374111 + MER1A DNA MER1_type 4 529 0 42 36 0 0 chr9 79897572 79897628 -62373816 + AT_rich Low_complexity Low_complexity 1 56 0 954 189 22 6 chr9 79899456 79899636 -62371808 + MER5A DNA MER1_type 7 189 0 1394 214 63 40 chr9 79899692 79900141 -62371303 - MER89 LTR ERV1 0 559 1 15541 181 43 20 chr9 79900142 79901818 -62369626 - MER89-int LTR ERV1 -2 6799 5162 2008 85 0 15 chr9 79901818 79902089 -62369355 + AluY SINE Alu 32 298 -13 15541 181 43 20 chr9 79902089 79904541 -62366903 - MER89-int LTR ERV1 -1639 5162 2548 3329 177 24 22 chr9 79904845 79905517 -62365927 - MER89-int LTR ERV1 -4270 2531 1859 1592 210 0 0 chr9 79905518 79905804 -62365640 + AluJo SINE Alu 3 288 -24 254 159 62 17 chr9 79905804 79906046 -62365398 + (TA)n Simple_repeat Simple_repeat 1 252 0 313 107 28 79 chr9 79906059 79906236 -62365208 + (TTATA)n Simple_repeat Simple_repeat 5 172 0 303 249 45 20 chr9 79906242 79906380 -62365064 + L1MC4 LINE L1 1942 6983 -1339 * 319 283 11 0 chr9 79906294 79906386 -62365058 - L1MC4 LINE L1 -1342 6700 6608 185 220 0 10 chr9 79906387 79906487 -62364957 + (TA)n Simple_repeat Simple_repeat 1 99 0 754 128 0 48 chr9 79906507 79906632 -62364812 - FRAM SINE Alu -24 152 34 345 75 0 0 chr9 79906649 79906702 -62364742 + (GA)n Simple_repeat Simple_repeat 2 54 0 6668 195 51 52 chr9 79906713 79907483 -62363961 - MER89-int LTR ERV1 -4934 1867 1098 1417 190 56 45 chr9 79907483 79907841 -62363603 - MER47A DNA MER2_type -4 362 1 6668 195 51 52 chr9 79907841 79908832 -62362612 - MER89-int LTR ERV1 -5703 1098 1 1383 245 47 20 chr9 79908832 79909250 -62362194 - MER89 LTR ERV1 0 559 31 3310 205 179 8 chr9 79910168 79910959 -62360485 - THE1C-int LTR MaLR -722 929 3 1983 167 16 13 chr9 79910963 79911335 -62360109 - THE1C LTR MaLR -2 373 1 1297 124 120 0 chr9 79911339 79911556 -62359888 - THE1C-int LTR MaLR -4 1576 1334 255 61 0 0 chr9 79911713 79911746 -62359698 + (CA)n Simple_repeat Simple_repeat 1 33 0 1994 104 54 0 chr9 79913612 79913890 -62357554 + AluSg SINE Alu 1 293 -17 282 179 0 0 chr9 79914183 79914239 -62357205 + (TTCA)n Simple_repeat Simple_repeat 4 59 0 574 336 77 0 chr9 79914249 79914508 -62356936 - MLT1L LTR MaLR -10 605 327 839 252 14 14 chr9 79914674 79914884 -62356560 + MER63A DNA MER1_type 1 210 0 187 128 0 43 chr9 79915572 79915619 -62355825 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 573 161 125 0 chr9 79915649 79915761 -62355683 - AluJo SINE Alu -30 282 157 424 360 16 26 chr9 79917039 79917228 -62354216 + MER5A DNA MER1_type 3 189 0 338 287 37 9 chr9 79917380 79917488 -62353956 - MLT1I LTR MaLR -2 407 297 2165 67 7 11 chr9 79917861 79918202 -62353242 - AluY SINE Alu 0 340 1 951 170 64 18 chr9 79918816 79918987 -62352457 - AluJo SINE Alu -133 179 1 2643 211 11 49 chr9 79919384 79919953 -62351491 + MLT2B3 LTR ERVL 1 547 -7 286 216 104 60 chr9 79920117 79920251 -62351193 - MIR SINE MIR -6 256 117 654 236 26 37 chr9 79920269 79920327 -62351117 - MER5A DNA MER1_type 0 189 132 2420 75 3 0 chr9 79920327 79920621 -62350823 + AluY SINE Alu 11 305 -6 654 236 26 37 chr9 79920621 79920753 -62350691 - MER5A DNA MER1_type -57 132 1 2234 92 20 3 chr9 79922042 79922337 -62349107 - AluSq SINE Alu -13 300 1 1868 224 37 64 chr9 79922558 79923006 -62348438 + MLT1D LTR MaLR 3 437 -68 1405 160 153 0 chr9 79923006 79923268 -62348176 - AluJb SINE Alu 0 302 1 1868 224 37 64 chr9 79923268 79923336 -62348108 + MLT1D LTR MaLR 437 505 0 1497 255 115 22 chr9 79923449 79924041 -62347403 - MER20B DNA MER1_type -47 736 90 371 219 24 24 chr9 79924045 79924127 -62347317 + AluS SINE Alu 1 82 -221 42 86 0 0 chr9 79924355 79924460 -62346984 + AT_rich Low_complexity Low_complexity 1 105 0 35 113 0 0 chr9 79924518 79924686 -62346758 + AT_rich Low_complexity Low_complexity 1 168 0 1907 147 0 36 chr9 79924773 79925079 -62346365 + AluSx SINE Alu 7 301 -11 242 273 30 0 chr9 79925079 79925145 -62346299 - MER20B DNA MER1_type -681 102 35 533 264 53 101 chr9 79925325 79925681 -62345763 - L1ME LINE L1 -5701 369 31 479 206 176 7 chr9 79926389 79926525 -62344919 - MER5A DNA MER1_type 0 189 31 212 195 228 57 chr9 79926420 79926543 -62344901 + MER5A DNA MER1_type 43 186 -3 * 582 322 53 18 chr9 79928532 79928820 -62342624 - MLT1I LTR MaLR -38 371 101 32 57 0 0 chr9 79928848 79928901 -62342543 + AT_rich Low_complexity Low_complexity 1 53 0 24 0 0 0 chr9 79929628 79929652 -62341792 + AT_rich Low_complexity Low_complexity 1 24 0 227 219 95 9 chr9 79929940 79930045 -62341399 - L1MC4 LINE L1 -26 8016 7903 502 248 7 7 chr9 79930090 79930235 -62341209 - L1MC4 LINE L1 -144 7898 7754 470 219 10 10 chr9 79931524 79931620 -62339824 - MER2 DNA MER2_type -248 97 2 220 189 0 0 chr9 79931925 79931962 -62339482 - L2 LINE L2 -17 3255 3219 692 302 170 34 chr9 79932408 79932819 -62338625 - LTR16C LTR ERVL 0 491 25 206 356 78 17 chr9 79933086 79933201 -62338243 + L2 LINE L2 3188 3309 -4 489 110 0 0 chr9 79934606 79934679 -62336765 + (TA)n Simple_repeat Simple_repeat 1 73 0 229 0 36 89 chr9 79936079 79936135 -62335309 + (TTTTTA)n Simple_repeat Simple_repeat 2 54 0 1593 55 5 0 chr9 79936147 79936348 -62335096 - L1PA3 LINE L1 -3 6152 5951 5796 203 41 40 chr9 79936361 79938860 -62332584 - L1MB7 LINE L1 -31 6651 4162 5276 241 98 24 chr9 79938827 79942027 -62329417 - L1MB7 LINE L1 -3222 3422 6 * 341 316 114 47 chr9 79942447 79942599 -62328845 - L1M4 LINE L1 -2093 4053 3913 2400 78 3 3 chr9 79942599 79942905 -62328539 - AluSg SINE Alu -4 306 1 341 316 114 47 chr9 79942905 79943113 -62328331 - L1M4 LINE L1 -2233 3913 3669 24 53 0 0 chr9 79943470 79943508 -62327936 + AT_rich Low_complexity Low_complexity 1 38 0 418 335 0 23 chr9 79944501 79944677 -62326767 - MLT1K LTR MaLR -22 566 395 559 358 70 16 chr9 79944821 79945207 -62326237 + L2 LINE L2 2892 3298 -15 2811 13 0 0 chr9 79945438 79945747 -62325697 - AluY SINE Alu -2 309 1 3649 145 12 0 chr9 79945893 79946499 -62324945 - L1MA5A LINE L1 -10 6287 5675 213 39 0 0 chr9 79947103 79947129 -62324315 + (TTG)n Simple_repeat Simple_repeat 2 27 0 224 167 21 0 chr9 79948023 79948071 -62323373 + (CA)n Simple_repeat Simple_repeat 2 50 0 893 200 24 34 chr9 79948450 79948655 -62322789 + MER3 DNA MER1_type 7 209 0 371 265 218 0 chr9 79948671 79948818 -62322626 + MER5A DNA MER1_type 10 188 -1 851 170 41 118 chr9 79948891 79949162 -62322282 - ORSL DNA AcHobo -24 251 2 2032 184 68 27 chr9 79949242 79949683 -62321761 + LTR2B LTR ERV1 32 490 0 411 244 113 36 chr9 79950173 79950341 -62321103 - MIR SINE MIR -1 261 81 2222 164 2 18 chr9 79950427 79950823 -62320621 + MLT1B LTR MaLR 1 390 0 27 29 0 0 chr9 79950977 79951011 -62320433 + AT_rich Low_complexity Low_complexity 1 34 0 730 263 77 21 chr9 79951687 79952105 -62319339 - MLT1F1 LTR MaLR 0 567 4 405 276 9 0 chr9 79952856 79952961 -62318483 + LTR16A LTR ERVL 345 450 0 21 0 0 0 chr9 79953253 79953274 -62318170 + AT_rich Low_complexity Low_complexity 1 21 0 219 295 167 26 chr9 79953448 79953604 -62317840 - MIR SINE MIR -37 225 48 1041 211 5 0 chr9 79953938 79954146 -62317298 + MER3 DNA MER1_type 1 209 0 315 331 40 8 chr9 79954762 79954886 -62316558 + L2 LINE L2 3137 3264 -8 255 254 9 132 chr9 79956352 79956580 -62314864 - L2 LINE L2 -254 3018 2819 2664 32 0 10 chr9 79959136 79959447 -62311997 + AluY SINE Alu 1 308 -3 228 290 32 21 chr9 79959617 79959710 -62311734 - MIR3 SINE MIR -6 202 109 277 295 161 0 chr9 79959819 79959931 -62311513 - L2 LINE L2 -6 3266 3137 2416 161 34 17 chr9 79960151 79960628 -62310816 - L1MB2 LINE L1 -3 6168 5684 330 26 0 0 chr9 79960727 79960766 -62310678 + (TG)n Simple_repeat Simple_repeat 2 40 0 2690 100 34 7 chr9 79961014 79961424 -62310020 - THE1-int LTR MaLR -84 1496 1076 186 191 0 0 chr9 79961624 79961671 -62309773 + CT-rich Low_complexity Low_complexity 2 48 0 984 207 5 0 chr9 79961894 79962082 -62309362 + MER5A DNA MER1_type 1 189 0 188 232 87 43 chr9 79962398 79962467 -62308977 + MIR SINE MIR 117 188 -74 1157 193 18 57 chr9 79963079 79963411 -62308033 - MER33 DNA MER1_type -1 323 5 300 70 0 0 chr9 79964926 79964969 -62306475 + (CA)n Simple_repeat Simple_repeat 2 44 0 543 234 28 93 chr9 79965627 79965841 -62305603 + MIR SINE MIR 49 248 -14 1114 61 8 0 chr9 79965917 79966048 -62305396 - AluY SINE Alu -179 132 1 267 79 0 0 chr9 79966445 79966483 -62304961 + (CA)n Simple_repeat Simple_repeat 2 39 0 220 262 123 80 chr9 79966958 79967145 -62304299 + MIR SINE MIR 67 261 -1 190 400 68 13 chr9 79967862 79968097 -62303347 + L3b LINE CR1 1117 1364 -219 253 295 0 0 chr9 79970743 79970821 -62300623 + (TA)n Simple_repeat Simple_repeat 1 78 0 26 30 0 0 chr9 79970923 79970956 -62300488 + AT_rich Low_complexity Low_complexity 1 33 0 247 250 17 0 chr9 79971731 79971791 -62299653 + (TGGA)n Simple_repeat Simple_repeat 4 64 0 1491 218 52 52 chr9 79972105 79972397 -62299047 - MLT1C LTR MaLR 0 467 173 1979 125 0 7 chr9 79972397 79972684 -62298760 - AluSg SINE Alu -17 293 9 1491 218 52 52 chr9 79972684 79972855 -62298589 - MLT1C LTR MaLR -293 174 4 234 128 0 0 chr9 79972946 79972985 -62298459 + (TA)n Simple_repeat Simple_repeat 1 39 0 186 316 0 0 chr9 79973572 79973629 -62297815 + MIR SINE MIR 200 256 -6 270 340 97 21 chr9 79973645 79973789 -62297655 + L2 LINE L2 3096 3250 -22 329 331 82 44 chr9 79975025 79975515 -62295929 + L2 LINE L2 2607 3109 -163 183 276 171 16 chr9 79975730 79975853 -62295591 + MIR SINE MIR 120 261 -1 21 57 0 0 chr9 79975854 79975889 -62295555 + AT_rich Low_complexity Low_complexity 1 35 0 1409 217 0 14 chr9 79976002 79976288 -62295156 - AluJo SINE Alu -30 282 1 1634 217 69 45 chr9 79976491 79976984 -62294460 + MLT1D LTR MaLR 1 505 0 198 326 0 20 chr9 79978289 79978338 -62293106 - MIR SINE MIR -191 71 24 241 307 134 50 chr9 79978352 79978694 -62292750 + L2 LINE L2 2605 2975 -339 936 209 49 4 chr9 79979210 79979435 -62292009 + Charlie1 DNA MER1_type 8 242 -2519 571 162 28 35 chr9 79979415 79979557 -62291887 + Charlie1 DNA MER1_type 2619 2759 -2 * 295 331 120 17 chr9 79979732 79979907 -62291537 - L3 LINE CR1 -1240 337 145 910 276 12 23 chr9 79981387 79981644 -62289800 - MIR SINE MIR -3 259 6 191 279 191 0 chr9 79982128 79982196 -62289248 + L3 LINE CR1 1374 1454 -123 1573 210 31 24 chr9 79982375 79982756 -62288688 + MLT1D LTR MaLR 122 505 0 333 307 63 29 chr9 79982770 79982975 -62288469 + L2 LINE L2 2766 2977 -337 186 133 0 0 chr9 79983047 79983077 -62288367 + (CA)n Simple_repeat Simple_repeat 2 31 0 356 220 20 7 chr9 79983079 79983229 -62288215 + (TA)n Simple_repeat Simple_repeat 2 153 0 190 286 179 12 chr9 79983251 79983419 -62288025 + L2 LINE L2 3118 3313 0 238 337 24 0 chr9 79983561 79983644 -62287800 - MIR SINE MIR 0 262 178 890 307 84 9 chr9 79983996 79984426 -62287018 + MLT1J LTR MaLR 15 476 -35 324 327 47 38 chr9 79984456 79984667 -62286777 - L1ME LINE L1 -391 5773 5561 2158 121 20 0 chr9 79984725 79985023 -62286421 - AluSq SINE Alu -9 304 1 596 305 40 7 chr9 79986168 79986433 -62285011 + ERVL LTR ERVL 4721 4988 -497 358 258 157 19 chr9 79987204 79987363 -62284081 + LTR16C LTR ERVL 308 488 -3 399 243 112 53 chr9 79987397 79987549 -62283895 + L2 LINE L2 3153 3313 0 243 0 0 0 chr9 79987903 79987930 -62283514 + (A)n Simple_repeat Simple_repeat 1 27 0 28 29 0 0 chr9 79988892 79988927 -62282517 + AT_rich Low_complexity Low_complexity 1 35 0 2214 98 3 0 chr9 79989010 79989297 -62282147 + AluSq SINE Alu 2 289 -24 3742 208 70 41 chr9 79989511 79990139 -62281305 + Charlie1a DNA MER1_type 1 680 -2081 2063 137 0 0 chr9 79990139 79990431 -62281013 - AluSx SINE Alu -18 294 3 3742 208 70 41 chr9 79990431 79990960 -62280484 + Charlie1a DNA MER1_type 680 1192 -263 5247 124 8 0 chr9 79991062 79991865 -62279579 - THE1B-int LTR MaLR -771 809 1 2070 124 35 51 chr9 79991865 79992235 -62279209 - THE1B LTR MaLR 0 364 1 341 380 0 0 chr9 79992250 79992416 -62279028 - LTR67 LTR ERVL -356 201 36 210 194 0 0 chr9 79992733 79992769 -62278675 + MIR SINE MIR 201 236 -26 268 273 145 24 chr9 79992825 79993114 -62278330 + L1M4 LINE L1 2265 2588 -3558 552 312 51 40 chr9 79993179 79993551 -62277893 + L1M4 LINE L1 4996 5371 -775 740 191 53 106 chr9 79993754 79993956 -62277488 + MER33 DNA MER1_type 1 171 -2414 1089 182 42 4 chr9 79993956 79994192 -62277252 - L1MB3 LINE L1 -7 6176 5932 740 191 53 106 chr9 79994192 79994338 -62277106 + MER33 DNA MER1_type 171 323 -1 1024 209 0 5 chr9 79994349 79994555 -62276889 - MER3 DNA MER1_type -4 205 1 295 269 21 21 chr9 79995391 79995484 -62275960 + L2 LINE L2 3191 3283 -30 189 243 0 0 chr9 79995525 79995562 -62275882 + L2 LINE L2 3267 3303 -10 229 313 67 30 chr9 79995588 79995722 -62275722 + L2 LINE L2 3170 3308 -5 21 0 0 0 chr9 79997142 79997163 -62274281 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr9 79999302 79999342 -62272102 + AT_rich Low_complexity Low_complexity 1 40 0 402 259 10 83 chr9 79999797 79999990 -62271454 - MLT1J LTR MaLR -1 510 332 325 200 0 0 chr9 80000359 80000429 -62271015 + MER116 DNA Mariner 1 70 -10 411 203 32 46 chr9 80001495 80001665 -62269779 - LTR28 LTR ERV1 -565 220 109 324 254 34 0 chr9 80001898 80001998 -62269446 - LTR28 LTR ERV1 -928 92 1 289 283 63 19 chr9 80001998 80002156 -62269288 + LTR33A LTR ERVL 357 521 -2 2418 159 21 33 chr9 80002793 80003397 -62268047 - MER4E LTR ERV1 0 779 1 24 53 0 0 chr9 80003571 80003609 -62267835 + AT_rich Low_complexity Low_complexity 1 38 0 255 356 0 0 chr9 80003978 80004051 -62267393 - L2 LINE L2 -17 3255 3183 483 332 71 30 chr9 80005523 80005981 -62265463 - L2 LINE L2 -122 3191 2718 261 330 64 11 chr9 80005939 80006054 -62265390 - MIR SINE MIR -70 138 19 * 520 319 47 0 chr9 80006811 80006980 -62264464 + L2 LINE L2 39 215 -3099 518 43 14 0 chr9 80006982 80007051 -62264393 + (CA)n Simple_repeat Simple_repeat 2 71 0 180 328 101 25 chr9 80007100 80007219 -62264225 + L2 LINE L2 3113 3240 -73 280 259 0 0 chr9 80007277 80007331 -62264113 + L2 LINE L2 3251 3304 -9 1874 174 0 0 chr9 80007346 80007645 -62263799 + AluSx SINE Alu 1 299 -13 198 333 233 0 chr9 80007748 80007868 -62263576 - L2 LINE L2 0 3272 3125 22 70 0 0 chr9 80008717 80008760 -62262684 + AT_rich Low_complexity Low_complexity 1 43 0 262 313 0 0 chr9 80008919 80008986 -62262458 + MER5A DNA MER1_type 72 138 -51 320 265 81 30 chr9 80009392 80009673 -62261771 - L1M4 LINE L1 -2148 3998 3702 258 32 0 0 chr9 80009688 80009719 -62261725 + (TG)n Simple_repeat Simple_repeat 1 31 0 365 335 93 13 chr9 80009831 80010132 -62261312 + L1M4 LINE L1 4157 4481 -1665 712 261 17 0 chr9 80010288 80010468 -62260976 - MER5A DNA MER1_type -1 188 6 185 262 196 19 chr9 80010469 80010576 -62260868 - L3 LINE CR1 -294 1283 1158 277 370 26 13 chr9 80011731 80011885 -62259559 + MIR3 SINE MIR 36 191 -17 180 115 19 39 chr9 80011912 80011964 -62259480 + (TG)n Simple_repeat Simple_repeat 2 52 0 324 340 198 0 chr9 80012313 80012525 -62258919 + MIR SINE MIR 3 256 -6 234 150 0 0 chr9 80013536 80013576 -62257868 + (TCC)n Simple_repeat Simple_repeat 3 42 0 425 126 29 29 chr9 80013581 80013684 -62257760 + CT-rich Low_complexity Low_complexity 2 104 0 722 289 66 4 chr9 80014691 80014919 -62256525 - MIR SINE MIR -1 261 20 522 277 38 38 chr9 80016845 80017029 -62254415 - MIR SINE MIR 0 262 79 476 331 35 6 chr9 80017938 80018110 -62253334 - MIR3 SINE MIR -4 204 28 262 306 44 60 chr9 80018720 80018903 -62252541 - MLT1J LTR MaLR -331 180 1 1264 167 66 44 chr9 80019123 80019397 -62252047 + MER33 DNA MER1_type 1 284 -2301 1489 202 33 39 chr9 80019397 80019704 -62251740 + AluJo SINE Alu 1 305 -7 1264 167 66 44 chr9 80019704 80019746 -62251698 + MER33 DNA MER1_type 284 324 0 2020 147 17 22 chr9 80020496 80020857 -62250587 + MER84 LTR ERVI 149 507 0 233 160 46 8 chr9 80020908 80021039 -62250405 + (TA)n Simple_repeat Simple_repeat 2 137 0 437 299 22 16 chr9 80021279 80021463 -62249981 + L1M4 LINE L1 2210 2394 -3752 54 40 0 0 chr9 80021576 80021651 -62249793 + AT_rich Low_complexity Low_complexity 1 75 0 413 266 43 53 chr9 80021673 80021861 -62249583 + L1M4 LINE L1 2956 3141 -3005 271 321 63 42 chr9 80021884 80022314 -62249130 + L1M4 LINE L1 3323 3761 -2385 273 227 49 68 chr9 80022340 80022503 -62248941 + L1M4 LINE L1 3818 3977 -2169 719 228 69 47 chr9 80022508 80022741 -62248703 - MLT1A1 LTR MaLR -5 360 123 264 324 75 0 chr9 80022743 80022916 -62248528 + L1M4 LINE L1 4628 4813 -1333 11152 38 6 0 chr9 80023232 80024588 -62246856 - L1P LINE L1 -1404 4742 3379 7720 14 1 0 chr9 80024588 80025978 -62245466 + L1PA3 LINE L1 4778 6168 0 2073 131 43 6 chr9 80025978 80026329 -62245115 + L1MB3 LINE L1 5816 6179 -4 492 346 141 9 chr9 80026594 80026941 -62244503 + L2 LINE L2 2921 3313 0 361 230 67 37 chr9 80026942 80027077 -62244367 + MIR SINE MIR 106 244 -18 261 209 164 0 chr9 80029134 80029201 -62242243 - L1ME LINE L1 -482 5639 5562 382 278 37 13 chr9 80029395 80029557 -62241887 + L1MDa LINE L1 1768 1974 -4614 666 325 135 45 chr9 80029806 80030886 -62240558 + L1MEd LINE L1 167 1343 -4862 245 226 75 32 chr9 80031077 80031170 -62240274 + L1MEd LINE L1 1599 1695 -4701 16979 34 1 0 chr9 80031227 80034044 -62237400 - L1PA2 LINE L1 -2 6153 3335 251 236 0 0 chr9 80034807 80034862 -62236582 + A-rich Low_complexity Low_complexity 1 55 0 191 338 0 0 chr9 80035051 80035122 -62236322 - L2 LINE L2 -15 3257 3187 238 239 60 0 chr9 80035426 80035493 -62235951 - MIR SINE MIR -123 139 69 248 307 132 62 chr9 80035502 80035873 -62235571 - MLT1K LTR MaLR -9 579 183 534 252 17 0 chr9 80036073 80036192 -62235252 + MIR SINE MIR 44 164 -98 381 335 102 20 chr9 80036199 80036492 -62234952 + L2 LINE L2 2330 2646 -668 23 54 0 0 chr9 80036786 80036823 -62234621 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr9 80036840 80036873 -62234571 + AT_rich Low_complexity Low_complexity 1 33 0 764 308 139 8 chr9 80037904 80038300 -62233144 + MLT1J2 LTR MaLR 1 448 -2 348 77 0 0 chr9 80038318 80038370 -62233074 + (TG)n Simple_repeat Simple_repeat 1 52 0 230 254 98 0 chr9 80038469 80038591 -62232853 + L1ME4a LINE L1 5985 6118 -3 359 306 125 97 chr9 80038755 80039186 -62232258 - L2 LINE L2 -1 3271 2829 1107 266 81 16 chr9 80039598 80040031 -62231413 - MLT1C LTR MaLR 0 467 7 235 257 209 40 chr9 80040530 80040678 -62230766 + MER5A DNA MER1_type 16 188 -1 24 53 0 0 chr9 80040974 80041012 -62230432 + AT_rich Low_complexity Low_complexity 1 38 0 1393 265 70 25 chr9 80041157 80041599 -62229845 + LTR16B LTR ERVL 3 464 0 612 257 98 16 chr9 80042358 80042541 -62228903 + MIR SINE MIR 1 198 -64 202 296 99 21 chr9 80042586 80042728 -62228716 + L2 LINE L2 3149 3301 -12 217 326 95 11 chr9 80044229 80044324 -62227120 + L2 LINE L2 3202 3304 -9 808 261 19 77 chr9 80044523 80044783 -62226661 - MIR SINE MIR -16 246 2 193 195 0 0 chr9 80044860 80044901 -62226543 - L2 LINE L2 0 3313 3273 2187 122 0 6 chr9 80045426 80045737 -62225707 + AluSx SINE Alu 2 310 -2 1128 244 83 6 chr9 80045755 80046067 -62225377 + MER2 DNA MER2_type 1 336 -9 248 294 124 41 chr9 80047916 80048110 -62223334 - MIR SINE MIR -48 214 5 533 283 61 42 chr9 80048132 80048240 -62223204 + L2 LINE L2 2440 2544 -770 2331 88 0 3 chr9 80048240 80048537 -62222907 - AluY SINE Alu -15 296 1 533 283 61 42 chr9 80048537 80048640 -62222804 + L2 LINE L2 2544 2655 -659 1668 241 32 28 chr9 80048663 80049193 -62222251 - L1M4 LINE L1 -912 5234 4703 233 284 99 0 chr9 80049193 80049274 -62222170 + L2 LINE L2 2912 3000 -313 219 88 0 0 chr9 80049744 80049778 -62221666 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 43 56 0 0 chr9 80050266 80050337 -62221107 + AT_rich Low_complexity Low_complexity 1 71 0 313 293 58 63 chr9 80050365 80050514 -62220930 + L2 LINE L2 2219 2368 -946 1089 274 71 8 chr9 80050514 80050893 -62220551 - MLT1I LTR MaLR -4 405 3 313 293 58 63 chr9 80050893 80050934 -62220510 + L2 LINE L2 2368 2408 -906 301 253 280 0 chr9 80050934 80051084 -62220360 + MLT1J2 LTR MaLR 2 193 -257 562 359 117 18 chr9 80051229 80051775 -62219669 + L2 LINE L2 2360 2959 -355 288 255 0 69 chr9 80052037 80052139 -62219305 + MIR SINE MIR 155 249 -13 322 234 0 0 chr9 80052757 80052821 -62218623 + MER103 DNA DNA 23 86 -80 264 314 157 0 chr9 80053097 80053218 -62218226 + MIR3 SINE MIR 37 176 -32 1325 176 0 33 chr9 80053347 80053591 -62217853 + AluJb SINE Alu 55 290 -22 1991 112 58 7 chr9 80054171 80054466 -62216978 - AluSg SINE Alu 0 310 1 387 0 0 0 chr9 80055187 80055230 -62216214 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1686 265 55 60 chr9 80056047 80056643 -62214801 - MLT1E LTR MaLR 0 593 1 470 377 67 16 chr9 80056819 80057249 -62214195 + L2 LINE L2 1862 2313 -1001 2301 96 0 3 chr9 80057520 80057821 -62213623 + AluY SINE Alu 3 302 -9 263 355 89 18 chr9 80058330 80058499 -62212945 + L2 LINE L2 3132 3312 -1 285 75 0 0 chr9 80059476 80059516 -62211928 + (TG)n Simple_repeat Simple_repeat 1 40 0 30 0 0 0 chr9 80059600 80059630 -62211814 + AT_rich Low_complexity Low_complexity 1 30 0 1014 213 10 9 chr9 80060509 80060815 -62210629 - MSTD LTR MaLR -14 382 2 386 212 146 22 chr9 80061013 80061150 -62210294 - MIR SINE MIR 0 262 109 355 127 0 25 chr9 80061150 80061229 -62210215 + (GA)n Simple_repeat Simple_repeat 2 78 0 441 265 112 20 chr9 80061436 80061632 -62209812 + MIR SINE MIR 49 262 0 21 36 0 0 chr9 80062246 80062274 -62209170 + AT_rich Low_complexity Low_complexity 1 28 0 1031 56 14 0 chr9 80062722 80062864 -62208580 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 196 209 15 15 chr9 80062924 80062991 -62208453 + GA-rich Low_complexity Low_complexity 3 69 0 190 289 0 0 chr9 80063097 80063142 -62208302 + L2 LINE L2 2399 2443 -871 510 263 216 17 chr9 80063719 80063951 -62207493 - MLT1K LTR MaLR -8 580 303 367 351 23 46 chr9 80064409 80064583 -62206861 + MIR3 SINE MIR 11 180 -28 324 0 0 0 chr9 80065548 80065584 -62205860 + (CA)n Simple_repeat Simple_repeat 1 36 0 183 368 123 9 chr9 80066873 80066979 -62204465 + MIR3 SINE MIR 77 194 -14 2227 121 0 16 chr9 80067683 80067998 -62203446 - AluSx SINE Alu -2 310 1 656 348 92 26 chr9 80068082 80068660 -62202784 - L2 LINE L2 -652 2662 2047 205 358 15 45 chr9 80068852 80068986 -62202458 + MIR SINE MIR 74 203 -59 1142 271 77 32 chr9 80069884 80070326 -62201118 - LTR16B LTR ERVL 0 464 3 24 53 0 0 chr9 80070473 80070511 -62200933 + AT_rich Low_complexity Low_complexity 1 38 0 242 286 155 42 chr9 80070807 80070975 -62200469 - MER5A DNA MER1_type -1 188 2 181 93 0 70 chr9 80071319 80071362 -62200082 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 269 350 8 25 chr9 80071955 80072075 -62199369 + MIR SINE MIR 32 149 -113 39 0 0 0 chr9 80073562 80073601 -62197843 + AT_rich Low_complexity Low_complexity 1 39 0 2449 42 0 39 chr9 80074272 80074583 -62196861 + AluY SINE Alu 1 299 -12 441 271 43 21 chr9 80074692 80074832 -62196612 - MIR SINE MIR -106 156 14 29 0 0 0 chr9 80074889 80074918 -62196526 + AT_rich Low_complexity Low_complexity 1 29 0 772 190 99 24 chr9 80074930 80075141 -62196303 + L1ME1 LINE L1 5935 6161 -5 389 234 314 0 chr9 80076607 80076744 -62194700 - MER5A DNA MER1_type -1 188 9 216 0 0 0 chr9 80077012 80077036 -62194408 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 403 294 12 38 chr9 80078610 80078770 -62192674 + MIR SINE MIR 46 201 -61 239 247 106 35 chr9 80078895 80078980 -62192464 + MIR SINE MIR 11 101 -161 240 267 17 0 chr9 80079060 80079120 -62192324 + MIR SINE MIR 119 179 -83 1817 45 0 0 chr9 80079220 80079441 -62192003 + L1PA5 LINE L1 5930 6150 -4 7506 20 6 0 chr9 80081159 80082435 -62189009 + L1PA3 LINE L1 4856 6136 -19 376 299 68 21 chr9 80083146 80083303 -62188141 + MER102b DNA MER1_type 97 270 -1158 1037 239 5 0 chr9 80083303 80083521 -62187923 + MER20 DNA MER1_type 1 219 0 376 299 68 21 chr9 80083521 80083597 -62187847 + MER102b DNA MER1_type 270 341 0 357 24 0 0 chr9 80083747 80083789 -62187655 + (TG)n Simple_repeat Simple_repeat 1 42 0 281 168 10 40 chr9 80083920 80083974 -62187470 + GA-rich Low_complexity Low_complexity 2 53 -46 2058 165 0 0 chr9 80083974 80084283 -62187161 + AluSx SINE Alu 1 309 -3 281 168 10 40 chr9 80084283 80084329 -62187115 + GA-rich Low_complexity Low_complexity 53 99 0 374 80 0 0 chr9 80084576 80084626 -62186818 + LTR40b LTR ERVL 413 462 0 * 1354 207 108 13 chr9 80084626 80085009 -62186435 - LTR40a LTR ERVL -75 444 17 249 301 124 0 chr9 80086239 80086352 -62185092 - LTR33 LTR ERVL -6 515 389 2266 115 0 10 chr9 80088015 80088329 -62183115 - AluY SINE Alu 0 311 1 417 278 97 0 chr9 80089374 80089518 -62181926 - LTR33 LTR ERVL -6 515 358 1691 183 77 3 chr9 80090726 80091065 -62180379 + MLT1A1 LTR MaLR 1 364 -1 309 315 48 75 chr9 80091085 80091188 -62180256 + L2 LINE L2 2446 2550 -764 2027 103 72 7 chr9 80091188 80091480 -62179964 - AluSx SINE Alu -1 311 1 309 315 48 75 chr9 80091480 80091668 -62179776 + L2 LINE L2 2550 2729 -585 948 260 98 35 chr9 80091727 80092246 -62179198 - L1MC4 LINE L1 -188 7854 7303 275 353 81 35 chr9 80092385 80092643 -62178801 + L2 LINE L2 2986 3255 -58 181 382 168 16 chr9 80094193 80094515 -62176929 + L2 LINE L2 2807 3177 -95 322 234 28 99 chr9 80094839 80094980 -62176464 - L1MC4 LINE L1 -1898 5910 5780 2157 110 24 3 chr9 80095585 80095876 -62175568 + AluSx SINE Alu 1 297 -15 2033 134 3 10 chr9 80097811 80098116 -62173328 - AluSx SINE Alu -9 303 1 303 253 121 47 chr9 80098200 80098390 -62173054 + MLT1J2 LTR MaLR 65 268 -182 186 231 0 0 chr9 80098777 80098816 -62172628 - MIR3 SINE MIR -39 169 131 199 217 256 62 chr9 80098993 80099122 -62172322 - MIR3 SINE MIR -16 192 39 442 330 95 7 chr9 80099859 80100165 -62171279 - MARNA DNA Mariner -219 367 35 278 225 6 50 chr9 80100300 80100460 -62170984 + GA-rich Low_complexity Low_complexity 2 154 0 28 29 0 0 chr9 80101363 80101398 -62170046 + AT_rich Low_complexity Low_complexity 1 35 0 2230 122 0 0 chr9 80101708 80102004 -62169440 + AluSx SINE Alu 1 296 -16 1889 197 137 7 chr9 80102193 80102640 -62168804 + MLT1D LTR MaLR 1 505 0 234 323 128 0 chr9 80102845 80102978 -62168466 - MIR SINE MIR -64 198 49 212 311 0 16 chr9 80103216 80103277 -62168167 + MIR SINE MIR 112 171 -91 33254 42 36 3 chr9 80105435 80109826 -62161618 + L1P LINE L1 1 4534 -1612 1579 86 0 0 chr9 80109926 80110123 -62161321 - AluY SINE Alu -114 197 1 1072 233 168 7 chr9 80110345 80110637 -62160807 + MER58B DNA MER1_type 3 341 0 251 233 6 49 chr9 80110659 80110822 -62160622 + CT-rich Low_complexity Low_complexity 3 158 0 288 70 0 0 chr9 80111585 80111628 -62159816 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 769 281 106 38 chr9 80112034 80112347 -62159097 - LTR33 LTR ERVL 0 521 172 267 93 0 0 chr9 80112347 80112390 -62159054 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 769 281 106 38 chr9 80112390 80112493 -62158951 - LTR33 LTR ERVL -349 172 77 523 271 20 54 chr9 80113064 80113267 -62158177 + MIR3 SINE MIR 13 208 0 180 0 0 0 chr9 80115396 80115416 -62156028 + (GA)n Simple_repeat Simple_repeat 1 20 0 290 337 28 39 chr9 80115646 80115827 -62155617 + L2 LINE L2 3134 3312 -1 293 268 87 55 chr9 80116465 80116592 -62154852 + L2 LINE L2 3137 3267 -5 2323 154 11 8 chr9 80117511 80117875 -62153569 + MLT1A1 LTR MaLR 1 365 0 193 261 105 56 chr9 80118580 80118708 -62152736 + MIR SINE MIR 38 192 -70 222 128 0 0 chr9 80118720 80118759 -62152685 + (CA)n Simple_repeat Simple_repeat 2 40 0 187 237 53 0 chr9 80119134 80119172 -62152272 + MIR SINE MIR 204 243 -19 24 0 0 0 chr9 80119261 80119285 -62152159 + AT_rich Low_complexity Low_complexity 1 24 0 378 249 99 82 chr9 80119328 80119730 -62151714 - L1MC4 LINE L1 -1 8041 7633 23 0 0 71 chr9 80119866 80119908 -62151536 + AT_rich Low_complexity Low_complexity 1 39 0 1711 157 56 11 chr9 80119973 80120259 -62151185 + AluJb SINE Alu 1 299 -13 905 237 39 15 chr9 80120392 80120685 -62150759 + L1MB8 LINE L1 5879 6178 0 219 69 0 0 chr9 80120697 80120726 -62150718 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 1835 157 7 27 chr9 80123151 80123445 -62147999 - AluJo SINE Alu -24 288 1 2127 204 41 73 chr9 80124514 80125078 -62146366 + MLT2B3 LTR ERVL 1 546 -8 664 219 28 39 chr9 80125145 80125323 -62146121 + LTR41 LTR ERVL 1 176 -597 268 164 0 45 chr9 80125764 80125831 -62145613 + LTR41 LTR ERVL 693 756 -17 236 283 0 0 chr9 80125855 80125908 -62145536 + L2 LINE L2 3213 3265 -7 1761 214 31 48 chr9 80126152 80126573 -62144871 - MLT2D LTR ERVL 0 414 1 21 36 0 0 chr9 80128497 80128525 -62142919 + AT_rich Low_complexity Low_complexity 1 28 0 1544 187 0 17 chr9 80128957 80129256 -62142188 - AluJo SINE Alu -18 294 1 2113 142 0 7 chr9 80129270 80129579 -62141865 - AluSx SINE Alu 0 312 6 2041 124 20 3 chr9 80130055 80130354 -62141090 - AluSq SINE Alu -9 304 1 191 300 17 17 chr9 80130563 80130623 -62140821 + MER5A DNA MER1_type 130 189 0 2715 140 23 26 chr9 80130836 80131264 -62140180 - MSTC LTR MaLR -1 427 1 2074 120 0 14 chr9 80131889 80132220 -62139224 - AluSx SINE Alu 0 327 1 347 325 97 35 chr9 80132610 80132838 -62138606 + MIR SINE MIR 8 249 -13 478 252 87 0 chr9 80132996 80133111 -62138333 - L2 LINE L2 0 3313 3189 234 0 0 0 chr9 80133163 80133189 -62138255 + (CA)n Simple_repeat Simple_repeat 2 27 0 2433 127 33 28 chr9 80134363 80134725 -62136719 + THE1B LTR MaLR 1 364 0 2474 38 7 0 chr9 80135801 80136090 -62135354 - AluY SINE Alu -20 291 1 294 266 69 34 chr9 80136100 80136246 -62135198 - MIR SINE MIR -71 137 16 433 320 0 24 chr9 80137037 80137162 -62134282 - MIR SINE MIR -67 141 20 316 336 22 0 chr9 80137400 80137548 -62133896 - MIR SINE MIR -62 146 13 27 0 0 0 chr9 80137588 80137615 -62133829 + AT_rich Low_complexity Low_complexity 1 27 0 2194 132 8 81 chr9 80138138 80138373 -62133071 - MLT1A1 LTR MaLR 0 365 169 2294 81 3 31 chr9 80138373 80138695 -62132749 - AluSp SINE Alu 0 313 1 2194 132 8 81 chr9 80138695 80138853 -62132591 - MLT1A1 LTR MaLR -196 169 1 375 307 21 7 chr9 80139280 80139420 -62132024 + LTR16C LTR ERVL 317 458 -33 505 300 75 79 chr9 80139681 80140148 -62131296 + L2 LINE L2 2804 3268 -4 216 306 0 24 chr9 80141002 80141087 -62130357 + MIR SINE MIR 170 252 -10 602 294 55 40 chr9 80142184 80142459 -62128985 - MER115 DNA AcHobo -5 688 410 402 321 104 28 chr9 80142515 80142727 -62128717 - MER115 DNA AcHobo -465 228 1 295 333 0 0 chr9 80142971 80143055 -62128389 + L2 LINE L2 3229 3312 -1 2274 95 0 0 chr9 80143884 80144179 -62127265 - AluSg SINE Alu -15 295 1 276 157 0 0 chr9 80144536 80144587 -62126857 + Alu SINE Alu 249 299 -1 740 288 82 13 chr9 80144886 80145119 -62126325 + MIR SINE MIR 13 261 -1 250 273 231 7 chr9 80145247 80145390 -62126054 + LTR16C LTR ERVL 99 273 -218 1784 109 0 0 chr9 80145416 80145654 -62125790 + AluSg/x SINE Alu 66 303 -9 246 264 74 47 chr9 80145728 80145876 -62125568 + LTR16C LTR ERVL 283 434 -57 817 145 30 4 chr9 80147654 80147894 -62123550 + CT-rich Low_complexity Low_complexity 1 246 0 23 78 0 0 chr9 80147960 80148011 -62123433 + AT_rich Low_complexity Low_complexity 1 51 0 355 309 195 0 chr9 80148112 80148261 -62123183 + MER5A DNA MER1_type 9 186 -3 592 246 0 0 chr9 80148802 80148916 -62122528 - MER81 DNA DNA 0 114 1 519 253 19 49 chr9 80149788 80149950 -62121494 - MER5B DNA MER1_type 0 178 22 252 227 99 18 chr9 80150727 80150859 -62120585 - MER5A DNA MER1_type -3 186 1 471 298 165 6 chr9 80150905 80151063 -62120381 + MER5A DNA MER1_type 7 189 0 211 365 104 0 chr9 80151122 80151314 -62120130 + L2 LINE L2 2827 3038 -234 260 287 10 40 chr9 80151379 80151480 -62119964 + MIR3 SINE MIR 83 180 -28 183 222 0 0 chr9 80151527 80151563 -62119881 - L2 LINE L2 -13 3300 3265 266 325 159 38 chr9 80152071 80152228 -62119216 + MIR3 SINE MIR 4 179 -29 218 350 83 32 chr9 80153121 80153278 -62118166 - MIR3 SINE MIR -40 168 4 382 323 117 31 chr9 80153483 80153740 -62117704 + L2 LINE L2 2206 2484 -830 1208 261 4 0 chr9 80153768 80154025 -62117419 + MER45C DNA AcHobo 6 263 -690 336 203 16 0 chr9 80154219 80154283 -62117161 + MER45C DNA AcHobo 889 953 0 273 362 51 56 chr9 80154345 80154660 -62116784 + L2 LINE L2 2529 2843 -471 1714 181 70 43 chr9 80154660 80155059 -62116385 + MLT2D LTR ERVL 5 414 0 273 362 51 56 chr9 80155059 80155193 -62116251 + L2 LINE L2 2843 2976 -338 395 239 35 92 chr9 80155306 80155448 -62115996 + L2 LINE L2 3139 3272 0 204 135 0 0 chr9 80157347 80157384 -62114060 + (GA)n Simple_repeat Simple_repeat 1 37 0 272 261 54 54 chr9 80157990 80158101 -62113343 + MIR SINE MIR 105 215 -47 2243 151 91 15 chr9 80158519 80158917 -62112527 - MSTA LTR MaLR 0 428 1 1897 113 0 25 chr9 80158983 80159257 -62112187 + AluSg SINE Alu 40 306 -4 189 307 130 67 chr9 80160340 80160656 -62110788 - L2 LINE L2 -613 2701 2366 1190 297 89 17 chr9 80160674 80161249 -62110195 + MLT2F LTR ERVL 45 660 -3 467 311 86 34 chr9 80161298 80161649 -62109795 - L2 LINE L2 -979 2335 1967 277 286 116 33 chr9 80161706 80161860 -62109584 - MIR3 SINE MIR -36 172 6 1786 199 5 14 chr9 80162748 80163115 -62108329 - MLT1A1 LTR MaLR -1 364 1 227 143 0 54 chr9 80164502 80164558 -62106886 + (GA)n Simple_repeat Simple_repeat 1 53 0 207 273 0 0 chr9 80165443 80165487 -62105957 + polypyrimidine Low_complexity Low_complexity 2 45 0 195 100 0 0 chr9 80165860 80165890 -62105554 + (GA)n Simple_repeat Simple_repeat 1 30 0 243 307 104 61 chr9 80166591 80166820 -62104624 + MIR SINE MIR 13 249 -13 30 83 0 0 chr9 80166874 80166946 -62104498 + AT_rich Low_complexity Low_complexity 1 72 0 379 285 7 29 chr9 80166962 80167099 -62104345 - MIR SINE MIR -5 257 124 223 252 37 93 chr9 80167207 80167314 -62104130 - MER5B DNA MER1_type 0 178 78 360 0 0 0 chr9 80167424 80167464 -62103980 + (CA)n Simple_repeat Simple_repeat 2 41 0 2153 155 33 2 chr9 80168068 80168494 -62102950 - L1MA4 LINE L1 -5 6295 5857 2207 116 48 22 chr9 80168809 80169164 -62102280 + THE1B LTR MaLR 1 364 0 234 0 0 0 chr9 80169338 80169364 -62102080 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 190 274 48 0 chr9 80169940 80170002 -62101442 - L2 LINE L2 -1 3312 3248 407 272 123 36 chr9 80170035 80170230 -62101214 - L2 LINE L2 -204 3109 2898 2867 161 39 25 chr9 80171201 80171405 -62100039 - L1MB1 LINE L1 -5 6163 5963 1008 176 51 123 chr9 80171405 80171796 -62099648 + MLT1A1 LTR MaLR 1 363 -2 2867 161 39 25 chr9 80171796 80172161 -62099283 - L1MB1 LINE L1 -205 5963 5586 2232 113 0 3 chr9 80172658 80172968 -62098476 - AluSg1 SINE Alu 0 309 1 2491 176 11 26 chr9 80173179 80173714 -62097730 - L1MC2 LINE L1 -2 6342 5816 2270 166 46 0 chr9 80173714 80174145 -62097299 - L1MA9 LINE L1 -1 6311 5858 2755 164 20 12 chr9 80174151 80175096 -62096348 - L1MA9 LINE L1 -519 5793 4848 351 0 0 0 chr9 80175102 80175141 -62096303 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 217 302 189 0 chr9 80176949 80177055 -62094389 + MIR3 SINE MIR 35 160 -48 252 0 0 0 chr9 80177922 80177950 -62093494 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1716 130 50 3 chr9 80178175 80178497 -62092947 - L1MA8 LINE L1 -10 6281 5945 206 32 32 0 chr9 80179801 80179832 -62091612 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 23 0 0 0 chr9 80179898 80179921 -62091523 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr9 80180156 80180191 -62091253 + AT_rich Low_complexity Low_complexity 1 35 0 270 56 0 0 chr9 80181932 80181968 -62089476 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 210 259 19 0 chr9 80183463 80183517 -62087927 + GA-rich Low_complexity Low_complexity 2 56 0 303 309 79 7 chr9 80183520 80183659 -62087785 - MIR SINE MIR -5 257 109 1893 177 17 14 chr9 80184034 80184396 -62087048 + MLT1A1 LTR MaLR 1 363 -2 1302 248 153 5 chr9 80184475 80184875 -62086569 + MLT2F LTR ERVL 2 460 -203 1502 195 60 71 chr9 80184885 80185337 -62086107 + MLT1C LTR MaLR 7 453 -14 748 185 110 0 chr9 80185332 80185478 -62085966 + MLT2F LTR ERVL 500 661 -2 * 696 137 0 0 chr9 80185783 80185885 -62085559 - AluS SINE Alu -210 102 1 215 170 0 19 chr9 80185886 80185939 -62085505 + CT-rich Low_complexity Low_complexity 2 53 0 342 0 0 0 chr9 80186068 80186106 -62085338 + (CA)n Simple_repeat Simple_repeat 1 38 0 182 365 29 39 chr9 80186980 80187084 -62084360 + MIR SINE MIR 157 259 -3 467 147 0 0 chr9 80187591 80187666 -62083778 + MADE1 DNA Mariner 5 79 -1 2127 113 0 0 chr9 80187814 80188120 -62083324 - AluSg SINE Alu 0 306 1 294 279 0 0 chr9 80188267 80188335 -62083109 + MIR3 SINE MIR 108 175 -33 2053 127 25 51 chr9 80188417 80188971 -62082473 + MER51A LTR ERV1 1 634 0 193 133 0 67 chr9 80188974 80189019 -62082425 + L2 LINE L2 3270 3311 -2 39 38 0 0 chr9 80189123 80189176 -62082268 + AT_rich Low_complexity Low_complexity 1 53 0 1842 274 140 70 chr9 80189266 80189650 -62081794 + HAL1 LINE L1 1 357 -2150 794 249 12 0 chr9 80189650 80189823 -62081621 + MER45A DNA AcHobo 2 176 -2 1842 274 140 70 chr9 80189823 80190958 -62080486 + HAL1 LINE L1 357 1411 -1096 1883 112 0 7 chr9 80190958 80191243 -62080201 + L1PA8 LINE L1 5888 6170 -2 1842 274 140 70 chr9 80191243 80191577 -62079867 + HAL1 LINE L1 1411 1720 -787 1519 209 13 16 chr9 80191577 80191888 -62079556 - AluJo SINE Alu -2 310 1 1842 274 140 70 chr9 80191888 80192365 -62079079 + HAL1 LINE L1 1720 2496 -11 21 0 0 0 chr9 80192417 80192438 -62079006 + AT_rich Low_complexity Low_complexity 1 21 0 2058 72 0 8 chr9 80192798 80193060 -62078384 - AluY SINE Alu -5 306 47 230 406 29 14 chr9 80193477 80193615 -62077829 - MIR3 SINE MIR -49 159 20 232 172 17 35 chr9 80194018 80194076 -62077368 + CT-rich Low_complexity Low_complexity 4 60 0 668 226 0 11 chr9 80195342 80195519 -62075925 + AluY SINE Alu 137 311 0 714 267 89 13 chr9 80195719 80195955 -62075489 + MIR SINE MIR 2 255 -7 1425 236 93 69 chr9 80197459 80197984 -62073460 + MLT1H LTR MaLR 1 538 -11 440 314 85 5 chr9 80198508 80198696 -62072748 - MIR SINE MIR -6 256 54 22 56 0 0 chr9 80199204 80199240 -62072204 + AT_rich Low_complexity Low_complexity 1 36 0 510 279 99 14 chr9 80199958 80200180 -62071264 + MIR SINE MIR 6 246 -16 235 289 10 31 chr9 80200494 80200591 -62070853 + Charlie7 DNA MER1_type 1 95 -2517 476 302 139 0 chr9 80200699 80200901 -62070543 + Charlie7 DNA MER1_type 64 293 -2319 3269 276 100 11 chr9 80200901 80202279 -62069165 - ERVL LTR ERVL -501 5263 3763 1338 234 163 115 chr9 80202373 80202894 -62068550 + MLT1E2 LTR MaLR 62 607 -47 1639 181 35 53 chr9 80202913 80203310 -62068134 - MLT1B LTR MaLR 0 390 1 1203 297 77 21 chr9 80203311 80203856 -62067588 - ERVL LTR ERVL -2113 3541 2963 475 275 45 45 chr9 80204255 80204433 -62067011 - MER91A DNA MER1_type 0 196 19 213 327 30 124 chr9 80205826 80206028 -62065416 - MER5A DNA MER1_type -1 188 6 345 273 224 0 chr9 80206156 80206317 -62065127 + MIR3 SINE MIR 9 205 -3 192 318 19 65 chr9 80206419 80206526 -62064918 + MIR SINE MIR 91 192 -70 2198 280 169 37 chr9 80206641 80206702 -62064742 - L2 LINE L2 -1454 1860 1808 2264 80 45 0 chr9 80206702 80206990 -62064454 + AluSc SINE Alu 1 301 -8 2198 280 169 37 chr9 80206990 80208191 -62063253 - L2 LINE L2 -1506 1808 431 310 279 39 39 chr9 80208194 80208348 -62063096 + Charlie8 DNA MER1_type 108 261 -2156 378 226 52 26 chr9 80209259 80209374 -62062070 + MER94 DNA DNA 1 118 -16 588 309 81 5 chr9 80212202 80212425 -62059019 - MIR SINE MIR -13 249 10 324 267 47 0 chr9 80213840 80213926 -62057518 - L1MC4 LINE L1 -1339 6703 6614 225 0 0 0 chr9 80213926 80213951 -62057493 + (GA)n Simple_repeat Simple_repeat 2 26 0 1960 134 4 4 chr9 80213952 80214229 -62057215 - AluSx SINE Alu -35 277 1 1713 171 0 20 chr9 80214238 80214531 -62056913 - AluJb SINE Alu -24 288 2 767 284 37 9 chr9 80214568 80214786 -62056658 - MIR SINE MIR -26 236 13 2410 81 3 0 chr9 80214910 80215208 -62056236 - AluSq SINE Alu -13 300 2 201 171 0 0 chr9 80215283 80215318 -62056126 + (TTA)n Simple_repeat Simple_repeat 1 35 0 1917 91 4 0 chr9 80215350 80215613 -62055831 - L1PA10 LINE L1 0 6168 5905 225 0 0 0 chr9 80216325 80216350 -62055094 + (A)n Simple_repeat Simple_repeat 1 25 0 237 279 44 0 chr9 80216607 80216675 -62054769 - MIR SINE MIR -162 100 30 388 309 98 41 chr9 80217004 80217127 -62054317 - L2 LINE L2 -1 3271 3142 924 292 130 17 chr9 80217502 80217857 -62053587 + L2 LINE L2 2504 2926 -387 2195 113 0 0 chr9 80217857 80218168 -62053276 + AluY SINE Alu 1 311 0 924 292 130 17 chr9 80218168 80218277 -62053167 + L2 LINE L2 2926 3021 -292 342 243 97 29 chr9 80218624 80218727 -62052717 + MIR SINE MIR 134 243 -19 372 190 25 0 chr9 80218764 80218843 -62052601 + FLAM_A SINE Alu 53 133 0 242 326 133 11 chr9 80219095 80219276 -62052168 - L2 LINE L2 -166 3106 2904 229 257 149 0 chr9 80219695 80219769 -62051675 - MER91B DNA MER1_type -5 185 101 329 274 51 26 chr9 80220892 80221009 -62050435 - MIR SINE MIR -66 196 77 4641 123 44 7 chr9 80221779 80222536 -62048908 + LTR1 LTR ERV1 1 785 0 849 203 5 10 chr9 80223508 80223705 -62047739 + MER96B DNA MER1_type? 40 235 -182 470 235 95 35 chr9 80224267 80224467 -62046977 - LTR50 LTR ERVL -569 226 15 195 305 53 61 chr9 80224636 80224767 -62046677 - L2 LINE L2 -491 2823 2694 365 363 64 17 chr9 80226692 80226926 -62044518 + MIR SINE MIR 18 262 0 346 309 93 12 chr9 80227472 80227634 -62043810 - L2 LINE L2 -4 3309 3135 669 281 96 38 chr9 80227937 80228417 -62043027 + L1ME4a LINE L1 5382 5889 -232 404 289 18 29 chr9 80228451 80228645 -62042799 + L1MC4a LINE L1 4188 4378 -1768 2110 121 51 31 chr9 80228645 80229001 -62042443 + THE1B LTR MaLR 2 364 0 404 289 18 29 chr9 80229001 80229148 -62042296 + L1MC4a LINE L1 4378 4525 -1621 349 326 63 0 chr9 80229183 80229373 -62042071 + L1MC4a LINE L1 4504 4705 -1441 416 314 53 27 chr9 80229392 80230043 -62041401 + L1MC4a LINE L1 4887 5558 -604 305 290 11 0 chr9 80230068 80230161 -62041283 + L1MC4a LINE L1 5789 5882 -1926 22 56 0 0 chr9 80230172 80230208 -62041236 + AT_rich Low_complexity Low_complexity 1 36 0 1579 163 13 57 chr9 80230386 80230563 -62040881 - AluJb SINE Alu -20 292 132 197 33 33 0 chr9 80230563 80230593 -62040851 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1579 163 13 57 chr9 80230593 80230716 -62040728 - AluJb SINE Alu -180 132 5 1983 187 77 10 chr9 80230921 80231412 -62040032 - L1MB2 LINE L1 -2 6169 5646 762 224 0 0 chr9 80231413 80231556 -62039888 + FRAM SINE Alu 1 140 -36 2723 197 32 54 chr9 80231574 80232590 -62038854 - L1MB2 LINE L1 -522 5661 4668 372 285 45 73 chr9 80232620 80232866 -62038578 - L1MEd LINE L1 -5180 939 701 445 309 155 69 chr9 80236995 80237316 -62034128 + L2 LINE L2 2406 2698 -615 2255 107 0 13 chr9 80237316 80237625 -62033819 + AluSg SINE Alu 1 305 -5 445 309 155 69 chr9 80237625 80237884 -62033560 + L2 LINE L2 2698 3053 -260 1973 136 169 5 chr9 80237893 80238261 -62033183 - MSTA LTR MaLR 0 428 1 491 291 173 16 chr9 80238390 80238703 -62032741 - L2 LINE L2 0 3313 2952 2123 136 0 7 chr9 80238747 80239056 -62032388 - AluSx SINE Alu -5 307 1 281 274 0 98 chr9 80239069 80239171 -62032273 + L2 LINE L2 3222 3313 0 5695 107 7 53 chr9 80239929 80240977 -62030467 + L1PA15-16 LINE L1 1823 2821 -4028 3399 188 68 14 chr9 80240975 80241763 -62029681 - L1PBa LINE L1 -5836 1027 197 * 277 252 75 19 chr9 80242275 80242434 -62029010 + L1ME4a LINE L1 4158 4325 -1821 232 262 28 47 chr9 80242520 80242627 -62028817 + L1ME4a LINE L1 4477 4581 -1565 577 307 122 27 chr9 80243297 80243782 -62027662 + L1ME4a LINE L1 5366 5896 -225 432 277 76 17 chr9 80244009 80244172 -62027272 + MIR SINE MIR 40 211 -51 486 342 55 47 chr9 80245339 80245614 -62025830 - L1MEd LINE L1 -5758 361 85 250 238 125 50 chr9 80245782 80245862 -62025582 + L2 LINE L2 3186 3271 -1 2149 130 0 0 chr9 80246183 80246475 -62024969 - AluSx SINE Alu -8 304 13 2206 85 43 0 chr9 80246539 80246821 -62024623 - AluY SINE Alu -17 294 1 255 267 13 13 chr9 80246974 80247049 -62024395 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 456 292 84 34 chr9 80247589 80247767 -62023677 + MIR3 SINE MIR 16 202 -6 1221 209 91 62 chr9 80248434 80248770 -62022674 - LTR54B LTR ERV1 -2 496 140 2312 94 7 0 chr9 80248770 80249069 -62022375 - AluSx SINE Alu -11 301 1 1221 209 91 62 chr9 80249069 80249214 -62022230 - LTR54B LTR ERV1 -358 140 1 34 0 0 0 chr9 80249391 80249425 -62022019 + AT_rich Low_complexity Low_complexity 1 34 0 310 256 58 64 chr9 80249490 80249646 -62021798 + L1MEd LINE L1 1062 1216 -4903 437 313 26 5 chr9 80249756 80249948 -62021496 + HAL1b LINE L1 363 558 -790 2025 179 17 10 chr9 80250735 80251138 -62020306 - MLT1C LTR MaLR 0 467 62 496 148 23 0 chr9 80251161 80251249 -62020195 - MLT1C LTR MaLR -347 120 31 352 283 128 26 chr9 80251269 80251495 -62019949 + L1MEd LINE L1 2287 2535 -3594 10076 167 12 17 chr9 80251509 80253147 -62018297 + L1PA15-16 LINE L1 26 1656 -5193 180 0 0 0 chr9 80253147 80253167 -62018277 + (TAA)n Simple_repeat Simple_repeat 2 21 0 10076 167 12 17 chr9 80253167 80253307 -62018137 + L1PA15-16 LINE L1 1656 1795 -5054 1977 133 54 0 chr9 80253528 80253822 -62017622 - AluSx SINE Alu 0 312 3 526 276 138 24 chr9 80253822 80253929 -62017515 - L1MEc LINE L1 -3789 2434 2341 180 0 0 0 chr9 80253929 80253949 -62017495 + (TA)n Simple_repeat Simple_repeat 2 21 0 526 276 138 24 chr9 80253949 80254197 -62017247 - L1MEc LINE L1 -3882 2341 2079 329 374 25 15 chr9 80254444 80254642 -62016802 - L1MEc LINE L1 -4573 1823 1624 538 307 55 6 chr9 80254869 80255231 -62016213 + L1ME2 LINE L1 5450 5829 -335 4048 282 126 34 chr9 80255689 80257687 -62013757 + L2 LINE L2 737 2919 -395 197 273 130 0 chr9 80257724 80257801 -62013643 + MIR SINE MIR 46 132 -130 996 184 48 14 chr9 80257838 80258045 -62013399 + MER20 DNA MER1_type 1 214 -5 277 306 0 0 chr9 80258055 80258140 -62013304 + MIR SINE MIR 173 257 -5 450 326 81 25 chr9 80258183 80258419 -62013025 + L2 LINE L2 2903 3151 -162 198 71 0 0 chr9 80258419 80258447 -62012997 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 188 364 50 64 chr9 80258503 80258643 -62012801 + L2 LINE L2 3125 3262 -10 186 103 0 0 chr9 80259956 80259985 -62011459 + (TCC)n Simple_repeat Simple_repeat 2 30 0 339 210 10 70 chr9 80260066 80260166 -62011278 - L1ME3A LINE L1 -50 6120 6027 3482 102 2 0 chr9 80260455 80260943 -62010501 - L1PA10 LINE L1 -4 6164 5676 2596 232 36 8 chr9 80261376 80262010 -62009434 + MER82 DNA MER2_type 1 652 -1 1637 184 9 32 chr9 80263078 80263355 -62008089 + AluJb SINE Alu 5 276 -36 198 0 0 0 chr9 80263355 80263377 -62008067 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1637 184 9 32 chr9 80263377 80263414 -62008030 + AluJb SINE Alu 276 312 0 437 221 26 0 chr9 80263599 80263712 -62007732 + L1ME LINE L1 48 163 -5907 1627 233 60 47 chr9 80263722 80264442 -62007002 + L1ME LINE L1 270 998 -5072 719 319 96 10 chr9 80264456 80264854 -62006590 + MLT1J1 LTR MaLR 3 434 -12 1849 166 5 53 chr9 80265004 80265163 -62006281 + MLT1A1 LTR MaLR 5 170 -195 2188 135 0 0 chr9 80265163 80265474 -62005970 + AluSx SINE Alu 1 311 -1 1849 166 5 53 chr9 80265474 80265693 -62005751 + MLT1A1 LTR MaLR 170 365 0 197 136 0 45 chr9 80265848 80265892 -62005552 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 942 193 45 5 chr9 80267297 80267499 -62003945 + MER6B DNA MER2_type 1 210 0 183 308 100 67 chr9 80267654 80267774 -62003670 + L2 LINE L2 3141 3264 -8 291 245 0 0 chr9 80268832 80268926 -62002518 + GA-rich Low_complexity Low_complexity 3 96 0 1946 131 44 3 chr9 80270541 80270838 -62000606 - AluSg SINE Alu -1 309 1 453 206 0 0 chr9 80270967 80271069 -62000375 + GA-rich Low_complexity Low_complexity 2 103 0 1034 79 17 11 chr9 80271070 80271247 -62000197 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1239 187 130 11 chr9 80272581 80272843 -61998601 + AluJo SINE Alu 1 293 -19 189 0 0 0 chr9 80272843 80272864 -61998580 + (TA)n Simple_repeat Simple_repeat 1 21 0 189 194 0 0 chr9 80272865 80272896 -61998548 + MIR SINE MIR 201 231 -31 183 278 0 19 chr9 80273223 80273277 -61998167 - L2 LINE L2 -4 3268 3216 546 341 96 58 chr9 80273302 80274386 -61997058 + L2 LINE L2 483 1607 -1707 708 312 17 30 chr9 80274398 80274629 -61996815 + MIR SINE MIR 1 228 -34 1939 267 76 15 chr9 80274757 80275550 -61995894 + L1ME3A LINE L1 5323 6163 -7 235 252 73 53 chr9 80275815 80275966 -61995478 + L2 LINE L2 2933 3086 -186 249 301 24 0 chr9 80276844 80276927 -61994517 + GA-rich Low_complexity Low_complexity 4 88 0 363 209 0 0 chr9 80277490 80277557 -61993887 + MIR SINE MIR 82 148 -114 1566 225 23 3 chr9 80277557 80277904 -61993540 + MER44D DNA MER2_type 1 354 -351 928 161 0 7 chr9 80277904 80278053 -61993391 + AluJb SINE Alu 135 282 -30 266 0 0 29 chr9 80278065 80278100 -61993344 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1941 140 7 0 chr9 80278100 80278409 -61993035 + AluSx SINE Alu 2 312 0 2114 138 14 0 chr9 80278409 80278763 -61992681 + MER44D DNA MER2_type 347 705 0 229 303 13 13 chr9 80278768 80278844 -61992600 + MIR SINE MIR 149 224 -38 315 113 0 0 chr9 80279791 80279844 -61991600 + (TG)n Simple_repeat Simple_repeat 2 54 0 323 212 24 35 chr9 80280295 80280380 -61991064 + MIR SINE MIR 114 197 -65 410 241 128 87 chr9 80280788 80281053 -61990391 + L2 LINE L2 3020 3295 -18 1869 200 71 49 chr9 80282285 80282794 -61988650 - MLT2B1 LTR ERVL 0 520 1 1824 171 24 0 chr9 80283930 80284223 -61987221 - AluSx SINE Alu -12 300 1 415 196 0 0 chr9 80284429 80284521 -61986923 + FLAM_C SINE Alu 50 141 -2 516 329 112 3 chr9 80284525 80284838 -61986606 + L1MC/D LINE L1 5351 5697 -2111 1101 235 60 16 chr9 80284925 80285240 -61986204 - MER2 DNA MER2_type -14 331 3 1690 138 121 87 chr9 80285317 80285730 -61985714 - Tigger2a DNA MER2_type 0 434 8 1641 188 45 7 chr9 80285982 80286270 -61985174 + AluJo SINE Alu 1 299 -13 25 0 0 0 chr9 80286303 80286328 -61985116 + AT_rich Low_complexity Low_complexity 1 25 0 3160 154 107 28 chr9 80286379 80287033 -61984411 - MER39 LTR ERV1 -1 706 1 21 36 0 0 chr9 80288757 80288785 -61982659 + AT_rich Low_complexity Low_complexity 1 28 0 1745 157 144 24 chr9 80288910 80289361 -61982083 - MLT1D LTR MaLR 0 505 1 243 275 87 0 chr9 80289366 80289435 -61982009 - MIR SINE MIR -114 148 74 195 69 0 0 chr9 80290879 80290908 -61980536 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chr9 80290951 80290974 -61980470 + (A)n Simple_repeat Simple_repeat 1 23 0 677 184 0 0 chr9 80292484 80292593 -61978851 + FLAM_A SINE Alu 14 122 -20 61 0 0 0 chr9 80292640 80292701 -61978743 + AT_rich Low_complexity Low_complexity 1 61 0 363 243 53 7 chr9 80293377 80293529 -61977915 + MLT1L LTR MaLR 132 290 -325 381 132 98 0 chr9 80293612 80293701 -61977743 + MER33 DNA MER1_type 1 82 -97 4977 192 27 2 chr9 80293735 80294949 -61976495 - L1P4 LINE L1 -524 5642 4381 378 0 0 0 chr9 80294949 80294991 -61976453 + (TG)n Simple_repeat Simple_repeat 2 43 0 4977 192 27 2 chr9 80294991 80295255 -61976189 - L1P4 LINE L1 -1785 4381 4125 502 299 10 40 chr9 80295293 80295494 -61975950 + MLT1L LTR MaLR 404 598 -17 2081 159 130 2 chr9 80295736 80296150 -61975294 - MLT1C LTR MaLR 0 467 1 624 294 45 10 chr9 80297143 80297344 -61974100 - MIR SINE MIR -10 252 45 1362 192 86 3 chr9 80297694 80297996 -61973448 + MER58B DNA MER1_type 15 341 0 531 103 13 0 chr9 80298068 80298146 -61973298 + MADE1 DNA Mariner 2 80 0 585 257 15 0 chr9 80298510 80298646 -61972798 - MIR3 SINE MIR -16 192 55 398 253 50 52 chr9 80298681 80298871 -61972573 - MIR SINE MIR -54 208 18 407 81 68 27 chr9 80299436 80299510 -61971934 + MADE1 DNA Mariner 1 77 -3 664 276 122 27 chr9 80299542 80299879 -61971565 + MLT1J2 LTR MaLR 58 426 -24 262 305 57 14 chr9 80300017 80300158 -61971286 - MARNA DNA Mariner -220 366 220 784 194 54 21 chr9 80300166 80300352 -61971092 + MER58A DNA MER1_type 30 221 -3 296 255 39 20 chr9 80300395 80300497 -61970947 - MARNA DNA Mariner -393 193 90 684 268 83 38 chr9 80301352 80302052 -61969392 + L1ME3 LINE L1 5188 5932 -230 2215 115 3 3 chr9 80302151 80302456 -61968988 + AluSg SINE Alu 1 305 -5 345 264 83 0 chr9 80303252 80303373 -61968071 + L2 LINE L2 3180 3310 -3 188 344 0 47 chr9 80303463 80303527 -61967917 + MIR SINE MIR 23 83 -125 269 303 112 34 chr9 80303617 80303795 -61967649 + MIR SINE MIR 60 251 -11 2110 128 0 17 chr9 80304001 80304360 -61967084 + L1MC1 LINE L1 5622 5974 -359 520 191 96 0 chr9 80304358 80304473 -61966971 + L1MC1 LINE L1 6208 6333 0 * 1883 129 79 0 chr9 80306145 80306424 -61965020 + AluSg1 SINE Alu 1 301 -8 844 231 125 53 chr9 80306765 80307164 -61964280 + MSTC LTR MaLR 1 428 0 4723 192 43 19 chr9 80307720 80308865 -61962579 + L1MD2 LINE L1 5188 6351 -8 420 204 0 21 chr9 80308867 80308960 -61962484 - LTR40a LTR ERVL -428 91 1 397 255 43 80 chr9 80308988 80309176 -61962268 - MLT1J1 LTR MaLR -128 318 138 683 133 27 33 chr9 80309429 80309579 -61961865 + L1MA7 LINE L1 6138 6286 -5 355 325 73 95 chr9 80309921 80310195 -61961249 - L2 LINE L2 -37 3235 2968 354 98 0 0 chr9 80310295 80310346 -61961098 + (TA)n Simple_repeat Simple_repeat 2 52 0 563 288 112 26 chr9 80310682 80310949 -61960495 - MLT1J LTR MaLR -165 346 57 245 163 41 0 chr9 80311020 80311069 -61960375 - MLT1J LTR MaLR -460 51 1 230 286 0 0 chr9 80311894 80311957 -61959487 + CT-rich Low_complexity Low_complexity 1 63 0 583 316 74 10 chr9 80312243 80312553 -61958891 - MLT1I LTR MaLR -17 392 63 247 94 19 19 chr9 80313292 80313345 -61958099 + (CAAAAA)n Simple_repeat Simple_repeat 4 56 0 382 309 7 7 chr9 80313712 80313861 -61957583 - MER117 DNA MER1_type -44 153 5 1286 256 86 30 chr9 80314282 80314723 -61956721 - MLT1C LTR MaLR -1 466 1 305 225 130 43 chr9 80315114 80315252 -61956192 - L1ME4a LINE L1 -3 6118 5969 1402 193 67 30 chr9 80316078 80316290 -61955154 - MLT1B LTR MaLR 0 390 157 2287 96 6 13 chr9 80316290 80316602 -61954842 - AluSq SINE Alu -3 310 1 1402 193 67 30 chr9 80316602 80316762 -61954682 - MLT1B LTR MaLR -233 157 4 182 260 221 29 chr9 80317021 80317125 -61954319 + MIR3 SINE MIR 39 162 -46 519 267 8 0 chr9 80318388 80318508 -61952936 - MIR SINE MIR -10 252 132 222 229 0 0 chr9 80319972 80320042 -61951402 + (TA)n Simple_repeat Simple_repeat 2 71 0 378 151 0 0 chr9 80320071 80320144 -61951300 + (TG)n Simple_repeat Simple_repeat 2 74 0 417 382 71 29 chr9 80320969 80321419 -61950025 - L2 LINE L2 0 3272 2804 222 306 106 10 chr9 80321575 80321706 -61949738 + MIR SINE MIR 42 184 -63 227 258 31 52 chr9 80321924 80322021 -61949423 + MIR SINE MIR 123 217 -45 282 209 105 0 chr9 80323796 80323901 -61947543 - HAL1b LINE L1 -239 1109 994 670 206 23 0 chr9 80323920 80324051 -61947393 + L1MCa LINE L1 5 138 -6288 * 5867 151 36 3 chr9 80324044 80325043 -61946401 + L1MC1 LINE L1 5297 6328 -5 947 300 91 30 chr9 80325206 80325266 -61946178 - HAL1b LINE L1 -664 684 629 2004 160 12 32 chr9 80325266 80325610 -61945834 + MER1B DNA MER1_type 1 337 0 947 300 91 30 chr9 80325610 80326076 -61945368 - HAL1b LINE L1 -719 629 126 183 267 0 0 chr9 80327242 80327287 -61944157 - L3 LINE CR1 -852 725 681 1324 228 173 29 chr9 80327293 80327745 -61943699 + MLT2B1 LTR ERVL 4 520 0 9972 170 65 17 chr9 80327758 80330981 -61940463 - L1MA5 LINE L1 -2 6940 3560 6849 65 9 2 chr9 80331003 80332324 -61939120 - L1PA7 LINE L1 -2 6152 4827 5611 90 12 2 chr9 80332324 80333124 -61938320 + L1PA7 LINE L1 4021 4828 -1318 1555 47 5 0 chr9 80333124 80333306 -61938138 + L1PA5 LINE L1 5953 6146 -8 6495 219 34 39 chr9 80333308 80333841 -61937603 - L1MA5 LINE L1 -3229 3559 3025 2514 81 0 0 chr9 80333841 80334149 -61937295 - AluY SINE Alu -3 308 1 6495 219 34 39 chr9 80334149 80336823 -61934621 - L1MA5 LINE L1 -3763 3025 8 235 256 141 13 chr9 80336932 80337010 -61934434 - L2 LINE L2 -1009 2305 2218 312 348 29 22 chr9 80337294 80337432 -61934012 + MIR SINE MIR 25 163 -99 302 308 55 51 chr9 80337995 80338287 -61933157 - MLT1L LTR MaLR -2 613 321 331 369 21 27 chr9 80338290 80338477 -61932967 - MLT1K LTR MaLR -310 278 93 202 0 29 57 chr9 80341343 80341378 -61930066 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2565 205 34 9 chr9 80342881 80343407 -61928037 - MLT1F1 LTR MaLR -26 541 3 2623 211 6 0 chr9 80343735 80344284 -61927160 - L1PA16 LINE L1 -1867 4279 3728 5662 163 14 7 chr9 80344288 80346150 -61925294 + L1PA16 LINE L1 4282 6153 -13 315 200 200 22 chr9 80346565 80346745 -61924699 - HsTC2 DNA Tc2 0 1898 1687 274 261 81 72 chr9 80346714 80346825 -61924619 - HsTC2 DNA Tc2 -322 1576 1289 * 2171 110 0 0 chr9 80346841 80347132 -61924312 - AluSq SINE Alu -22 291 1 1875 257 113 21 chr9 80347160 80347813 -61923631 - HsTC2 DNA Tc2 -1182 716 4 42144 35 24 2 chr9 80348193 80354198 -61917246 + L1PA3 LINE L1 14 6155 0 593 303 87 36 chr9 80354406 80355014 -61916430 + L1ME4a LINE L1 5265 5903 -218 2212 113 0 3 chr9 80357858 80358158 -61913286 + AluSx SINE Alu 13 311 -1 272 248 66 8 chr9 80358263 80358384 -61913060 - L1ME4a LINE L1 -2 6119 5992 * 9756 191 61 30 chr9 80358381 80358670 -61912774 - L1MC3 LINE L1 -2 8201 7923 2209 112 0 10 chr9 80358670 80358982 -61912462 - AluSx SINE Alu -3 309 1 9756 191 61 30 chr9 80358982 80360180 -61911264 - L1MC3 LINE L1 -280 7923 6609 288 0 0 0 chr9 80360180 80360212 -61911232 + (CA)n Simple_repeat Simple_repeat 2 33 0 9756 191 61 30 chr9 80360212 80361091 -61910353 - L1MC3 LINE L1 -1594 6609 5759 4459 196 43 19 chr9 80361126 80362261 -61909183 - L1MC3 LINE L1 -1463 5101 3940 594 288 81 4 chr9 80362262 80362498 -61908946 - L1M4 LINE L1 -1150 4996 4743 560 212 80 0 chr9 80362518 80362655 -61908789 - L1M4 LINE L1 -1838 4308 4161 3731 258 36 22 chr9 80362657 80363213 -61908231 - L1MC3 LINE L1 -4936 1109 562 207 0 0 0 chr9 80363213 80363236 -61908208 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 3731 258 36 22 chr9 80363236 80363773 -61907671 - L1MC3 LINE L1 -5483 562 1 304 320 80 25 chr9 80363792 80363992 -61907452 - L1ME4a LINE L1 -116 6005 5795 903 215 99 75 chr9 80364001 80364457 -61906987 + LTR37B LTR ERV1 1 467 -1 2903 64 3 10 chr9 80364571 80364959 -61906485 - L1PA13 LINE L1 -2 6161 5777 604 303 128 71 chr9 80365381 80366308 -61905136 - L1ME4a LINE L1 -775 5371 4392 450 321 18 30 chr9 80366579 80366747 -61904697 + MER5B DNA MER1_type 12 177 -1 26 50 0 0 chr9 80366751 80366791 -61904653 + AT_rich Low_complexity Low_complexity 1 40 0 189 288 104 80 chr9 80366912 80367037 -61904407 + MIR3 SINE MIR 43 170 -38 249 277 15 0 chr9 80367188 80367253 -61904191 - Charlie8 DNA MER1_type -1002 1415 1350 2071 150 8 42 chr9 80367263 80367500 -61903944 + MER47A DNA MER2_type 1 222 -2101 2123 114 3 13 chr9 80367500 80367807 -61903637 - AluSq SINE Alu -9 304 1 2071 150 8 42 chr9 80367807 80367948 -61903496 + MER47A DNA MER2_type 222 366 0 280 294 54 0 chr9 80368015 80368107 -61903337 + Charlie7 DNA MER1_type 1 97 -2515 21 0 0 0 chr9 80368128 80368149 -61903295 + AT_rich Low_complexity Low_complexity 1 21 0 364 314 25 8 chr9 80368240 80368361 -61903083 + MIR SINE MIR 79 201 -61 1355 159 66 3 chr9 80369916 80370217 -61901227 + MER33 DNA MER1_type 2 321 -3 2775 165 6 0 chr9 80371275 80371747 -61899697 + L1MB2 LINE L1 5690 6164 -7 245 229 102 68 chr9 80371876 80371994 -61899450 - MIR3 SINE MIR -11 197 76 2098 231 16 22 chr9 80372893 80373395 -61898049 + MER119 DNA MER1_type 31 529 -54 2062 122 14 0 chr9 80374785 80375064 -61896380 - AluSx SINE Alu -17 295 13 320 364 26 0 chr9 80375152 80375306 -61896138 + MIR SINE MIR 32 189 -73 585 218 0 0 chr9 80376441 80376551 -61894893 - MER81 DNA DNA -4 110 1 2513 64 0 0 chr9 80376693 80377004 -61894440 + AluY SINE Alu 1 311 0 27 29 0 0 chr9 80377320 80377354 -61894090 + AT_rich Low_complexity Low_complexity 1 34 0 326 276 73 99 chr9 80377701 80377973 -61893471 - L2 LINE L2 -1 3312 3048 444 254 88 95 chr9 80379121 80379405 -61892039 - MLT1I LTR MaLR 0 409 128 22 35 0 0 chr9 80380879 80380908 -61890536 + AT_rich Low_complexity Low_complexity 1 29 0 321 316 69 1 chr9 80381703 80381883 -61889561 + MIR SINE MIR 16 204 -52 1880 57 0 8 chr9 80382454 80382699 -61888745 + L1PA8 LINE L1 5924 6166 -6 688 130 0 0 chr9 80383720 80383820 -61887624 - LTR12 LTR ERV1 0 714 615 273 238 12 0 chr9 80383823 80383907 -61887537 - LTR30 LTR ERV1 -80 642 558 1295 126 112 5 chr9 80383907 80384122 -61887322 - LTR12 LTR ERV1 -424 290 53 252 231 0 0 chr9 80384122 80384174 -61887270 - LTR30 LTR ERV1 -670 52 1 299 167 0 42 chr9 80385064 80385077 -61886367 + (TA)n Simple_repeat Simple_repeat 1 13 -56 1583 187 17 3 chr9 80385077 80385366 -61886078 + AluJb SINE Alu 1 293 -19 299 167 0 42 chr9 80385366 80385424 -61886020 + (TA)n Simple_repeat Simple_repeat 13 69 0 23 33 0 0 chr9 80385512 80385542 -61885902 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 80385563 80385584 -61885860 + AT_rich Low_complexity Low_complexity 1 21 0 457 265 29 6 chr9 80385664 80385834 -61885610 + L1ME4a LINE L1 5946 6119 -2 1495 222 93 0 chr9 80388267 80388632 -61882812 - MER63 DNA MER1_type 0 1060 662 182 258 113 0 chr9 80388645 80388707 -61882737 - MIR SINE MIR -94 168 100 423 0 0 0 chr9 80389582 80389629 -61881815 + (TG)n Simple_repeat Simple_repeat 2 48 0 185 237 145 13 chr9 80390790 80390866 -61880578 + MIR SINE MIR 64 149 -59 1496 207 7 0 chr9 80392010 80392157 -61879287 - AluJo SINE Alu -30 282 131 243 0 0 0 chr9 80392157 80392184 -61879260 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 1496 207 7 0 chr9 80392184 80392316 -61879128 - AluJo SINE Alu -181 131 1 22 0 0 0 chr9 80392367 80392389 -61879055 + AT_rich Low_complexity Low_complexity 1 22 0 239 278 151 35 chr9 80392396 80392680 -61878764 - L1ME4a LINE L1 -40 6081 5765 241 257 124 26 chr9 80392759 80392872 -61878572 + MER103 DNA DNA 42 165 -1 226 276 17 0 chr9 80393520 80393578 -61877866 + L2 LINE L2 3214 3272 0 260 278 113 22 chr9 80393786 80393959 -61877485 + MIR SINE MIR 26 220 -42 2226 115 0 3 chr9 80394763 80395067 -61876377 - AluSg SINE Alu -7 303 1 1767 172 57 37 chr9 80395076 80395483 -61875961 - L1MA10 LINE L1 -1 6333 5919 698 168 32 5 chr9 80395496 80395716 -61875728 + CT-rich Low_complexity Low_complexity 1 226 0 928 150 171 0 chr9 80396006 80396193 -61875251 + MER20 DNA MER1_type 1 219 0 469 326 152 37 chr9 80396884 80397292 -61874152 + MLT1K LTR MaLR 66 520 -68 431 342 77 0 chr9 80397726 80397922 -61873522 - MIR SINE MIR -44 218 8 230 305 37 0 chr9 80398158 80398240 -61873204 + MIR3 SINE MIR 75 159 -49 195 204 23 0 chr9 80398259 80398303 -61873141 - L2 LINE L2 -18 3254 3210 345 321 93 7 chr9 80399423 80399563 -61871881 + MIR SINE MIR 67 218 -44 261 347 50 5 chr9 80399587 80399724 -61871720 - MIR SINE MIR -68 140 15 287 238 83 12 chr9 80400833 80400917 -61870527 - MIR SINE MIR -108 154 65 209 265 10 102 chr9 80400984 80401082 -61870362 + MIR SINE MIR 124 212 -50 1844 168 52 73 chr9 80401193 80401634 -61869810 + MSTB1 LTR MaLR 1 432 0 1675 178 48 6 chr9 80401699 80402013 -61869431 - MER58B DNA MER1_type -2 339 13 736 282 62 50 chr9 80402120 80402672 -61868772 - MLT1L LTR MaLR -6 609 5 201 132 0 0 chr9 80403730 80403768 -61867676 + (T)n Simple_repeat Simple_repeat 1 38 0 43050 33 21 2 chr9 80403768 80409801 -61861643 - L1PA3 LINE L1 0 6155 4 320 258 24 48 chr9 80410109 80410233 -61861211 + MER117 DNA MER1_type 1 121 -76 324 209 0 0 chr9 80410706 80410797 -61860647 + (CA)n Simple_repeat Simple_repeat 2 92 0 1032 154 77 34 chr9 80411723 80411931 -61859513 + MER20 DNA MER1_type 3 219 0 408 215 11 0 chr9 80412191 80412284 -61859160 + MER53 DNA DNA 2 95 -94 366 202 11 11 chr9 80412206 80412300 -61859144 - MER53 DNA DNA -7 182 89 * 598 150 34 48 chr9 80412326 80412473 -61858971 + MER53 DNA DNA 45 189 0 203 278 0 0 chr9 80412626 80412680 -61858764 + L2 LINE L2 3254 3307 -6 967 295 100 39 chr9 80412776 80413237 -61858207 - MLT1J LTR MaLR -1 510 22 195 285 122 57 chr9 80413534 80413657 -61857787 + L2 LINE L2 3182 3312 -1 21 0 0 0 chr9 80415040 80415061 -61856383 + AT_rich Low_complexity Low_complexity 1 21 0 2117 110 0 0 chr9 80416151 80416469 -61854975 - AluSx SINE Alu 0 318 1 487 287 28 79 chr9 80416814 80417030 -61854414 - MIR SINE MIR -56 206 2 225 281 53 0 chr9 80417816 80417873 -61853571 + L2 LINE L2 3250 3309 -4 21 0 0 0 chr9 80418482 80418503 -61852941 + AT_rich Low_complexity Low_complexity 1 21 0 1379 266 131 51 chr9 80418503 80418990 -61852454 - L1ME3A LINE L1 -26 6144 5698 1539 163 119 31 chr9 80418990 80419075 -61852369 + MER7A DNA MER2_type 1 77 -2961 2338 78 7 3 chr9 80419075 80419369 -61852075 + AluY SINE Alu 1 295 -16 1539 163 119 31 chr9 80419369 80419603 -61851841 + MER7A DNA MER2_type 77 346 0 1379 266 131 51 chr9 80419603 80421364 -61850080 - L1ME3A LINE L1 -472 5698 3706 274 73 0 24 chr9 80421791 80421832 -61849612 - tRNA-Arg-AGA tRNA tRNA -36 40 1 230 343 130 22 chr9 80421864 80422102 -61849342 + L2 LINE L2 2883 3272 0 2276 99 14 0 chr9 80422169 80422463 -61848981 + AluSx SINE Alu 1 298 -14 2114 154 40 24 chr9 80422877 80423298 -61848146 - MSTA LTR MaLR 0 428 1 1821 197 65 43 chr9 80423396 80423706 -61847738 + Charlie1b DNA MER1_type 1 328 -2433 2355 91 3 0 chr9 80423706 80424004 -61847440 + AluSp SINE Alu 1 299 -14 1821 197 65 43 chr9 80424004 80424205 -61847239 + Charlie1b DNA MER1_type 328 523 0 1943 149 0 28 chr9 80425345 80425666 -61845778 + AluJb SINE Alu 1 312 0 225 0 0 0 chr9 80426107 80426132 -61845312 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 2052 63 0 0 chr9 80426627 80426879 -61844565 + AluY SINE Alu 1 252 -59 4094 205 78 82 chr9 80427702 80428837 -61842607 + L1MC4 LINE L1 6462 7591 -451 2546 50 3 3 chr9 80428837 80429137 -61842307 + AluY SINE Alu 2 301 -10 4094 205 78 82 chr9 80429137 80429588 -61841856 + L1MC4 LINE L1 7591 8042 0 2364 179 22 76 chr9 80430388 80430970 -61840474 - MLT2B3 LTR ERVL -3 551 1 265 264 14 0 chr9 80431092 80431164 -61840280 + (ATG)n Simple_repeat Simple_repeat 3 75 0 672 299 47 14 chr9 80431205 80431419 -61840025 - MIR SINE MIR -7 255 35 509 241 110 66 chr9 80432553 80432781 -61838663 - L2 LINE L2 0 3313 3076 283 376 45 19 chr9 80433016 80433173 -61838271 - MIR3 SINE MIR -3 205 45 294 29 0 0 chr9 80433326 80433361 -61838083 + (TG)n Simple_repeat Simple_repeat 2 36 0 331 235 34 42 chr9 80433892 80434011 -61837433 - MLT1L LTR MaLR -356 259 142 403 254 116 12 chr9 80434028 80434201 -61837243 - L1MC/D LINE L1 -1987 5821 5631 186 300 86 0 chr9 80435356 80435426 -61836018 + MIR SINE MIR 89 164 -98 1778 204 26 11 chr9 80435867 80436249 -61835195 + MSTD LTR MaLR 1 388 -8 273 331 54 43 chr9 80436257 80436441 -61835003 - L2 LINE L2 -470 2844 2659 2298 106 0 16 chr9 80436810 80437122 -61834322 + AluSc SINE Alu 3 309 0 747 204 111 12 chr9 80437189 80437351 -61834093 - MER5A DNA MER1_type -8 181 4 182 290 23 107 chr9 80437397 80437433 -61834011 - MIR SINE MIR -123 139 102 2569 62 0 0 chr9 80437433 80437741 -61833703 + AluY SINE Alu 1 308 -3 182 290 23 107 chr9 80437741 80437835 -61833609 - MIR SINE MIR -160 102 20 216 94 0 94 chr9 80438394 80438447 -61832997 + (CAAAAA)n Simple_repeat Simple_repeat 3 50 0 1202 225 4 0 chr9 80438966 80439224 -61832220 - AluJb SINE Alu -5 307 49 297 292 22 0 chr9 80439341 80439430 -61832014 + CT-rich Low_complexity Low_complexity 6 96 0 979 120 44 16 chr9 80439588 80439771 -61831673 + MER53 DNA DNA 2 189 0 354 198 117 68 chr9 80439924 80440086 -61831358 + L1MC4 LINE L1 6459 6628 -1414 61 15 0 0 chr9 80440217 80440285 -61831159 + AT_rich Low_complexity Low_complexity 1 68 0 299 347 16 32 chr9 80440515 80440639 -61830805 + MIR SINE MIR 2 123 -139 431 232 51 57 chr9 80440663 80440840 -61830604 - MER104 DNA MER2_type -3 177 2 1654 134 50 0 chr9 80441129 80441390 -61830054 + AluJb SINE Alu 9 282 -30 675 194 0 8 chr9 80441707 80441831 -61829613 + FLAM_A SINE Alu 1 123 -10 2175 86 0 80 chr9 80441838 80442162 -61829282 + AluY SINE Alu 1 298 -13 27 29 0 0 chr9 80442163 80442197 -61829247 + AT_rich Low_complexity Low_complexity 1 34 0 282 191 262 0 chr9 80442401 80442485 -61828959 + MIR SINE MIR 157 262 0 442 240 77 0 chr9 80443313 80443417 -61828027 + L2 LINE L2 3201 3312 -1 1900 152 10 13 chr9 80443475 80443784 -61827660 + AluJb SINE Alu 1 308 -4 305 192 33 187 chr9 80443868 80444050 -61827394 + MIR3 SINE MIR 44 197 -11 795 251 23 75 chr9 80444150 80444497 -61826947 + MLT1J1 LTR MaLR 1 329 -117 311 197 0 42 chr9 80444516 80444552 -61826892 + LTR40a LTR ERVL 3 36 -483 191 36 36 0 chr9 80444552 80444580 -61826864 + (TTG)n Simple_repeat Simple_repeat 2 30 0 311 197 0 42 chr9 80444580 80444614 -61826830 + LTR40a LTR ERVL 36 70 -449 1983 230 13 13 chr9 80444641 80445107 -61826337 + LTR40a LTR ERVL 54 519 0 1651 195 16 65 chr9 80445341 80445725 -61825719 + MLT1A1 LTR MaLR 1 365 0 402 170 28 38 chr9 80445811 80445917 -61825527 - MER103 DNA DNA -45 121 17 535 252 168 7 chr9 80446081 80446236 -61825208 - MER5A DNA MER1_type 0 189 10 1510 210 34 3 chr9 80446351 80446642 -61824802 - AluJo SINE Alu -12 300 1 2572 107 8 8 chr9 80446964 80447328 -61824116 + THE1B LTR MaLR 1 364 0 365 237 159 91 chr9 80448202 80448510 -61822934 - LTR33 LTR ERVL -15 506 178 6636 68 27 1 chr9 80448951 80449880 -61821564 + L1PA8 LINE L1 5206 6157 -15 24 32 0 0 chr9 80449938 80449969 -61821475 + AT_rich Low_complexity Low_complexity 1 31 0 201 152 0 0 chr9 80450044 80450077 -61821367 + (ATG)n Simple_repeat Simple_repeat 3 35 0 345 320 60 20 chr9 80450118 80450268 -61821176 - MIR SINE MIR -92 170 15 25 31 0 0 chr9 80450840 80450872 -61820572 + AT_rich Low_complexity Low_complexity 1 32 0 788 302 100 17 chr9 80451581 80451992 -61819452 + MLT1K LTR MaLR 144 588 0 524 325 123 15 chr9 80452702 80452905 -61818539 + MIR SINE MIR 32 256 -6 947 212 0 6 chr9 80453134 80453313 -61818131 - MER5B DNA MER1_type 0 178 1 34693 33 0 3 chr9 80453750 80458955 -61812489 + L1PA4 LINE L1 965 6155 0 1516 214 129 41 chr9 80459849 80460304 -61811140 + MLT1H LTR MaLR 68 542 0 658 239 25 0 chr9 80461699 80461862 -61809582 + MER117 DNA MER1_type 30 196 -1 2568 154 15 20 chr9 80462487 80462942 -61808502 + LTR32 LTR ERVL 19 471 0 218 244 0 0 chr9 80463483 80463528 -61807916 + L2 LINE L2 3266 3310 -3 2284 177 65 2 chr9 80463920 80464350 -61807094 + MSTB2 LTR MaLR 1 457 0 304 218 53 147 chr9 80466300 80466470 -61804974 - MER104 DNA Tc2 -1 179 26 367 207 64 133 chr9 80466470 80466488 -61804956 - MER104 DNA MER2_type -1 179 5 2129 123 0 3 chr9 80466727 80467019 -61804425 - AluSq SINE Alu -22 291 1 22 0 0 0 chr9 80468183 80468205 -61803239 + AT_rich Low_complexity Low_complexity 1 22 0 240 35 0 0 chr9 80468318 80468347 -61803097 + (TG)n Simple_repeat Simple_repeat 2 30 0 309 51 0 0 chr9 80469810 80469849 -61801595 + (TG)n Simple_repeat Simple_repeat 2 40 0 2385 91 0 0 chr9 80471059 80471357 -61800087 - AluY SINE Alu -13 298 1 1962 147 17 0 chr9 80472754 80473053 -61798391 + AluSx SINE Alu 1 304 -8 301 286 39 29 chr9 80473081 80473200 -61798244 + MIR SINE MIR 36 154 -62 196 318 101 54 chr9 80473864 80473993 -61797451 - MIR3 SINE MIR -29 179 45 1794 171 0 7 chr9 80474017 80474321 -61797123 + AluJb SINE Alu 1 302 -10 466 243 29 0 chr9 80474862 80474979 -61796465 + MIR SINE MIR 36 154 -62 220 286 48 88 chr9 80476240 80476387 -61795057 + L2 LINE L2 2715 2855 -459 451 323 122 13 chr9 80476457 80476686 -61794758 + L2 LINE L2 2953 3206 -66 2133 194 190 63 chr9 80476688 80477367 -61794077 - LTR41 LTR ERVL -7 766 2 220 136 45 0 chr9 80477390 80477434 -61794010 + L2 LINE L2 3268 3313 0 378 219 26 119 chr9 80478106 80478257 -61793187 - L2 LINE L2 0 3313 3177 289 173 107 0 chr9 80478445 80478520 -61792924 - MER33 DNA MER1_type 0 324 242 2680 48 0 3 chr9 80478520 80478830 -61792614 + AluSp SINE Alu 1 309 -4 542 246 0 8 chr9 80478830 80478960 -61792484 + FLAM_A SINE Alu 14 142 0 521 216 117 5 chr9 80478960 80479167 -61792277 - MER33 DNA MER1_type -93 270 1 207 69 0 0 chr9 80480582 80480611 -61790833 + (CCA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr9 80481686 80481715 -61789729 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 80482062 80482090 -61789354 + GC_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr9 80482440 80482487 -61788957 + GC_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr9 80485579 80485613 -61785831 + AT_rich Low_complexity Low_complexity 1 34 0 324 164 0 0 chr9 80486152 80486219 -61785225 + (TA)n Simple_repeat Simple_repeat 2 68 0 232 181 42 0 chr9 80488844 80488916 -61782528 + (TATG)n Simple_repeat Simple_repeat 2 76 0 228 313 145 28 chr9 80490754 80490933 -61780511 - MIR SINE MIR -10 252 53 189 0 0 0 chr9 80492850 80492871 -61778573 + (TTA)n Simple_repeat Simple_repeat 2 22 0 196 241 69 0 chr9 80493176 80493234 -61778210 - MIR SINE MIR -62 146 85 228 297 55 33 chr9 80493292 80493383 -61778061 - MIR3 SINE MIR -111 97 5 599 235 27 66 chr9 80493673 80493856 -61777588 + L2 LINE L2 3138 3313 0 484 291 20 20 chr9 80494437 80494585 -61776859 - MIR SINE MIR -71 191 44 307 333 76 0 chr9 80494678 80494822 -61776622 + MIR3 SINE MIR 31 185 -23 22 56 0 0 chr9 80494976 80495012 -61776432 + AT_rich Low_complexity Low_complexity 1 36 0 2061 119 31 0 chr9 80495312 80495605 -61775839 + AluSc SINE Alu 1 302 -7 1574 136 19 15 chr9 80496034 80496299 -61775145 - L1MA3 LINE L1 0 6305 6040 359 133 173 13 chr9 80496312 80496387 -61775057 + L2 LINE L2 3227 3313 0 191 371 16 0 chr9 80496520 80496582 -61774862 + MIR3 SINE MIR 12 74 -134 741 304 35 13 chr9 80497063 80497290 -61774154 - MIR SINE MIR -10 252 21 258 32 0 0 chr9 80497353 80497384 -61774060 + (TG)n Simple_repeat Simple_repeat 2 32 0 2112 98 0 11 chr9 80497384 80497669 -61773775 - AluSc SINE Alu -27 282 1 954 217 58 0 chr9 80498157 80498364 -61773080 + MER20 DNA MER1_type 1 219 0 210 329 196 0 chr9 80498795 80498953 -61772491 - L3 LINE CR1 -210 1367 1179 198 309 144 0 chr9 80500244 80500341 -61771103 - L2 LINE L2 0 3313 3203 198 317 28 49 chr9 80500422 80500564 -61770880 - L2 LINE L2 -189 3083 2945 226 269 154 0 chr9 80500743 80500821 -61770623 + L2 LINE L2 3174 3263 -9 208 178 0 22 chr9 80501081 80501126 -61770318 + GA-rich Low_complexity Low_complexity 4 47 0 1760 156 3 26 chr9 80501313 80501803 -61769641 - AluJb SINE Alu 0 483 1 428 245 39 0 chr9 80503149 80503251 -61768193 + MIR3 SINE MIR 55 160 -48 357 169 14 28 chr9 80503291 80503362 -61768082 + MER5B DNA MER1_type 106 175 -3 480 144 30 23 chr9 80503415 80503523 -61767921 - MER5A DNA MER1_type -77 112 4 191 86 0 29 chr9 80503711 80503746 -61767698 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 282 260 0 13 chr9 80504504 80504581 -61766863 + MER5C DNA MER1_type 1 76 -248 2451 61 7 0 chr9 80505070 80505366 -61766078 - AluY SINE Alu -13 298 1 490 296 153 40 chr9 80506614 80506993 -61764451 + L2 LINE L2 2144 2565 -749 350 254 268 14 chr9 80506987 80507129 -61764315 + MIR SINE MIR 77 254 -8 * 2237 89 0 52 chr9 80507171 80507496 -61763948 + AluY SINE Alu 1 308 -3 200 186 0 23 chr9 80507498 80507541 -61763903 + L2 LINE L2 2602 2643 -671 194 344 176 24 chr9 80507771 80507896 -61763548 + L2 LINE L2 3099 3242 -30 233 267 44 22 chr9 80508416 80508506 -61762938 + L2 LINE L2 2764 2855 -459 791 253 17 0 chr9 80508539 80508713 -61762731 - MER5B DNA MER1_type -1 177 1 366 315 0 8 chr9 80508770 80508900 -61762544 - MER103 DNA DNA -1 165 37 747 238 34 45 chr9 80509026 80509291 -61762153 + L2 LINE L2 3045 3306 -7 22 35 0 0 chr9 80510314 80510343 -61761101 + AT_rich Low_complexity Low_complexity 1 29 0 15425 119 53 19 chr9 80510589 80512927 -61758517 + Tigger1 DNA MER2_type 1 2418 0 235 214 326 11 chr9 80513000 80513089 -61758355 - L2 LINE L2 -4 3309 3193 341 280 318 0 chr9 80513109 80513241 -61758203 + MER5A DNA MER1_type 15 188 -1 474 295 75 8 chr9 80513255 80513496 -61757948 - L2 LINE L2 -140 3173 2917 198 167 0 0 chr9 80514228 80514264 -61757180 + GA-rich Low_complexity Low_complexity 2 37 0 342 0 0 0 chr9 80515408 80515446 -61755998 + (T)n Simple_repeat Simple_repeat 1 38 0 7544 51 0 33 chr9 80515594 80517155 -61754289 - L1PA6 LINE L1 0 6154 4619 1494 44 33 0 chr9 80517146 80517337 -61754107 - L1PA6 LINE L1 -1846 4300 4104 21 36 0 0 chr9 80518069 80518097 -61753347 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 80518629 80518652 -61752792 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr9 80521157 80521180 -61750264 + (A)n Simple_repeat Simple_repeat 1 23 0 1239 94 60 77 chr9 80523910 80524144 -61747300 - MER30 DNA MER1_type 0 230 1 274 161 0 0 chr9 80524186 80524242 -61747202 - L1M4 LINE L1 -3024 3122 3067 29 28 0 0 chr9 80524595 80524631 -61746813 + AT_rich Low_complexity Low_complexity 1 36 0 408 270 36 15 chr9 80525486 80525623 -61745821 + MIR SINE MIR 79 218 -44 220 270 139 26 chr9 80526086 80526201 -61745243 + MIR SINE MIR 61 188 -74 412 283 94 14 chr9 80526841 80526979 -61744465 + MIR SINE MIR 37 185 -77 386 256 149 48 chr9 80527008 80527415 -61744029 - MLT1J LTR MaLR -18 493 3 781 167 7 27 chr9 80529475 80529625 -61741819 - MER3 DNA MER1_type -58 151 5 1816 179 110 13 chr9 80529918 80530308 -61741136 - MSTA LTR MaLR 0 428 1 610 292 164 18 chr9 80530511 80530847 -61740597 + L3 LINE CR1 1134 1518 -59 199 175 0 25 chr9 80531016 80531056 -61740388 + MIR3 SINE MIR 159 197 -11 282 342 55 59 chr9 80531108 80531380 -61740064 + L2 LINE L2 2581 2851 -463 349 229 0 14 chr9 80581679 80581749 -61689695 - MER115 DNA AcHobo -137 556 488 469 300 25 59 chr9 80581836 80582073 -61689371 - MER115 DNA AcHobo -388 305 77 209 139 28 0 chr9 80582235 80582271 -61689173 + (TA)n Simple_repeat Simple_repeat 2 38 0 334 240 31 10 chr9 80587207 80587303 -61684141 + L2 LINE L2 3136 3233 -39 1815 220 33 22 chr9 80587463 80587917 -61683527 - MLT1C LTR MaLR -2 465 7 1177 200 70 72 chr9 80588048 80588393 -61683051 + MER2 DNA MER2_type 1 344 0 298 185 0 0 chr9 80589371 80589425 -61682019 + MLT1H LTR MaLR 1 54 -495 308 274 18 44 chr9 80589515 80589628 -61681816 + MLT1H LTR MaLR 227 336 -213 2087 124 0 113 chr9 80589628 80590008 -61681436 - MER1B DNA MER1_type 0 337 1 322 280 105 28 chr9 80590432 80590575 -61680869 - MIR SINE MIR -80 182 29 261 0 0 0 chr9 80592404 80592433 -61679011 + (T)n Simple_repeat Simple_repeat 1 29 0 256 239 68 34 chr9 80594539 80594627 -61676817 + MIR SINE MIR 7 97 -165 552 286 41 6 chr9 80594668 80594839 -61676605 - MIR SINE MIR -79 183 7 1409 139 49 5 chr9 80596206 80596429 -61675015 - MER46A DNA MER2_type -3 233 1 279 0 0 0 chr9 80597510 80597541 -61673903 + (CA)n Simple_repeat Simple_repeat 2 32 0 205 180 213 0 chr9 80597586 80597647 -61673797 - L2 LINE L2 -8 3264 3191 2025 152 0 9 chr9 80598140 80598455 -61672989 - AluJb SINE Alu 0 312 1 354 91 0 0 chr9 80599271 80599326 -61672118 + (TC)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chr9 80600279 80600302 -61671142 + AT_rich Low_complexity Low_complexity 1 23 0 2524 59 0 3 chr9 80600421 80600726 -61670718 - AluY SINE Alu -7 304 1 351 206 294 0 chr9 80602512 80602614 -61668830 + MER94 DNA DNA 2 133 -1 362 286 120 32 chr9 80603180 80603397 -61668047 - MIR SINE MIR -16 246 11 228 67 0 0 chr9 80603944 80603974 -61667470 + (CA)n Simple_repeat Simple_repeat 2 31 0 29 47 0 0 chr9 80604092 80604135 -61667309 + AT_rich Low_complexity Low_complexity 1 43 0 229 313 45 116 chr9 80604955 80605153 -61666291 - L2 LINE L2 -95 3177 2994 2089 118 7 10 chr9 80607220 80607517 -61663927 - AluSg SINE Alu -14 296 1 253 333 0 34 chr9 80607617 80607764 -61663680 + CT-rich Low_complexity Low_complexity 6 147 0 450 204 135 29 chr9 80608886 80609121 -61662323 - MER46C DNA MER2_type -21 317 1 25 51 0 0 chr9 80609368 80609407 -61662037 + AT_rich Low_complexity Low_complexity 1 39 0 441 54 0 0 chr9 80609414 80609470 -61661974 + (CA)n Simple_repeat Simple_repeat 2 57 0 410 167 12 0 chr9 80609470 80609554 -61661890 + CT-rich Low_complexity Low_complexity 2 86 0 14568 27 6 5 chr9 80610187 80612018 -61659426 + L1P2 LINE L1 3673 5501 -654 1059 217 65 23 chr9 80612832 80613141 -61658303 - MER33 DNA MER1_type -2 322 1 492 336 71 63 chr9 80613228 80613624 -61657820 + L2 LINE L2 2856 3254 -18 217 338 40 0 chr9 80613697 80613771 -61657673 + L2 LINE L2 3153 3229 -43 225 0 0 0 chr9 80613787 80613812 -61657632 + (TG)n Simple_repeat Simple_repeat 1 25 0 340 313 83 26 chr9 80614615 80614807 -61656637 + L2 LINE L2 2843 3045 -268 306 238 94 55 chr9 80614991 80615172 -61656272 - MER112 DNA MER1_type 0 260 73 180 152 0 0 chr9 80615181 80615214 -61656230 + (CA)n Simple_repeat Simple_repeat 2 34 0 241 182 0 0 chr9 80615248 80615292 -61656152 + MIR3 SINE MIR 155 198 -10 938 185 6 31 chr9 80615382 80615544 -61655900 - FAM SINE Alu -17 158 1 1173 225 100 66 chr9 80616253 80616831 -61654613 - L1MC4 LINE L1 -26 8016 7419 344 296 75 11 chr9 80616852 80617038 -61654406 - L1MC4a LINE L1 -599 7209 7012 524 260 42 62 chr9 80617103 80617149 -61654295 - MIR SINE MIR -2 260 215 2704 102 21 16 chr9 80617149 80617521 -61653923 + THE1C LTR MaLR 1 374 -1 524 260 42 62 chr9 80617521 80617666 -61653778 - MIR SINE MIR -47 215 73 680 224 274 4 chr9 80618180 80618421 -61653023 - L1MC4 LINE L1 -1008 7034 6729 208 77 51 0 chr9 80619565 80619604 -61651840 + A-rich Low_complexity Low_complexity 4 44 0 8121 78 34 3 chr9 80619682 80620822 -61650622 - L1P LINE L1 -2400 3746 2572 2022 148 0 0 chr9 80620944 80621242 -61650202 + AluSx SINE Alu 2 299 -13 200 286 20 71 chr9 80621642 80621740 -61649704 + MIR SINE MIR 30 122 -140 209 246 14 58 chr9 80624451 80624520 -61646924 + L2 LINE L2 3248 3313 0 198 103 0 0 chr9 80624805 80624834 -61646610 + (CTG)n Simple_repeat Simple_repeat 3 31 0 1739 158 3 7 chr9 80624914 80625199 -61646245 - AluJb SINE Alu -28 284 1 267 214 134 64 chr9 80625390 80625577 -61645867 - L1MC5 LINE L1 -51 7910 7711 337 308 209 24 chr9 80626673 80627004 -61644440 + L2 LINE L2 2922 3313 0 212 324 80 68 chr9 80627995 80628171 -61643273 + MIR SINE MIR 21 198 -64 201 255 0 43 chr9 80629045 80629092 -61642352 + L2 LINE L2 3258 3302 -11 1750 117 40 18 chr9 80629907 80630219 -61641225 - AluSx SINE Alu 0 322 5 398 316 128 54 chr9 80631429 80631982 -61639462 + L2 LINE L2 300 893 -2421 842 274 182 26 chr9 80631986 80632670 -61638774 + L2 LINE L2 2539 3313 0 288 308 88 22 chr9 80632822 80633004 -61638440 + L2 LINE L2 3120 3313 0 190 326 70 70 chr9 80633321 80633493 -61637951 + L2 LINE L2 2396 2567 -747 196 225 78 113 chr9 80634542 80634684 -61636760 - MIR SINE MIR -89 173 37 435 92 0 0 chr9 80636488 80636553 -61634891 + (TG)n Simple_repeat Simple_repeat 2 66 0 209 224 69 17 chr9 80636899 80636957 -61634487 - L2 LINE L2 -1 3312 3252 1861 121 0 0 chr9 80638055 80638312 -61633132 + AluSc SINE Alu 44 300 -9 215 250 40 26 chr9 80639241 80639317 -61632127 - MIR SINE MIR -30 178 102 268 270 27 81 chr9 80640334 80640482 -61630962 - MIR SINE MIR -44 218 79 1681 149 13 44 chr9 80640713 80641028 -61630416 + AluJo SINE Alu 8 312 0 279 231 39 39 chr9 80642076 80642154 -61629290 + MIR3 SINE MIR 82 159 -49 416 153 82 12 chr9 80642194 80642279 -61629165 - MER5A DNA MER1_type -87 102 12 433 237 17 107 chr9 80644127 80644304 -61627140 - MER5B DNA MER1_type -17 161 1 1338 173 31 87 chr9 80644895 80645218 -61626226 - AluJb SINE Alu -5 307 3 545 318 82 31 chr9 80645782 80646314 -61625130 + L2 LINE L2 2740 3295 -18 234 196 22 0 chr9 80646842 80646888 -61624556 - MLT1A1 LTR MaLR 0 365 319 270 254 0 55 chr9 80647060 80647170 -61624274 + AluSg SINE Alu 1 104 -196 250 268 18 0 chr9 80647349 80647405 -61624039 + MLT1H LTR MaLR 163 219 -330 1624 208 0 3 chr9 80647412 80647725 -61623719 + AluSx SINE Alu 1 312 0 347 218 113 8 chr9 80647811 80647935 -61623509 + MLT1H LTR MaLR 400 536 -13 2251 104 3 22 chr9 80648214 80648531 -61622913 - AluSx SINE Alu -1 311 1 462 101 0 0 chr9 80650396 80650465 -61620979 + (TC)n Simple_repeat Simple_repeat 2 70 0 257 406 58 0 chr9 80651238 80651376 -61620068 - L2 LINE L2 -8 3264 3119 1170 170 21 44 chr9 80652273 80652628 -61618816 - MSTB2 LTR MaLR 0 457 1 542 269 35 0 chr9 80653073 80653214 -61618230 + MIR SINE MIR 103 248 -14 272 264 40 57 chr9 80654131 80654273 -61617171 - MIR SINE MIR -65 143 11 321 330 116 9 chr9 80656495 80656728 -61614716 - MLT1J LTR MaLR -16 495 238 385 293 33 13 chr9 80656941 80657091 -61614353 + MLT1J LTR MaLR 359 511 0 288 292 142 8 chr9 80657185 80657305 -61614139 - L2 LINE L2 0 3272 3137 261 75 0 0 chr9 80657374 80657414 -61614030 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 255 381 25 17 chr9 80657443 80657561 -61613883 - MIR SINE MIR -115 147 29 21 0 0 0 chr9 80657854 80657875 -61613569 + AT_rich Low_complexity Low_complexity 1 21 0 672 287 187 5 chr9 80658471 80658840 -61612604 - MLT1J2 LTR MaLR -14 436 1 716 249 75 67 chr9 80659411 80659814 -61611630 + MLT1I LTR MaLR 4 410 -40 1317 286 86 14 chr9 80660160 80660663 -61610781 - L1ME3 LINE L1 -211 5951 5413 430 244 24 24 chr9 80661938 80662061 -61609383 + MER5C DNA MER1_type 2 124 -200 255 259 35 12 chr9 80662114 80662199 -61609245 + MER5C DNA MER1_type 238 324 0 3241 130 33 74 chr9 80662237 80662875 -61608569 - L1MA7 LINE L1 -7 6284 5673 209 327 0 0 chr9 80662901 80662953 -61608491 - MER5A DNA MER1_type -70 119 68 2181 235 98 16 chr9 80663059 80663613 -61607831 - Zaphod DNA AcHobo -3420 611 13 218 242 0 30 chr9 80663624 80663690 -61607754 + GA-rich Low_complexity Low_complexity 4 67 0 219 88 0 0 chr9 80664498 80664532 -61606912 + (TG)n Simple_repeat Simple_repeat 1 34 0 206 293 53 60 chr9 80665182 80665315 -61606129 + MIR SINE MIR 70 201 -61 2762 104 87 9 chr9 80665368 80665819 -61605625 - L1MA8 LINE L1 -3 6288 5803 426 54 81 27 chr9 80665871 80666097 -61605347 + (TA)n Simple_repeat Simple_repeat 1 238 0 1090 169 6 0 chr9 80666103 80666286 -61605158 - L1MA8 LINE L1 -502 5789 5606 784 184 0 35 chr9 80666286 80666427 -61605017 - FLAM_A SINE Alu 0 142 7 247 182 0 0 chr9 80666430 80666485 -61604959 - L1MA8 LINE L1 -558 5593 5553 750 318 40 17 chr9 80668288 80668584 -61602860 + L3 LINE CR1 186 488 -1089 214 270 16 0 chr9 80668744 80668807 -61602637 + L2 LINE L2 3250 3313 0 1969 152 0 3 chr9 80668864 80669151 -61602293 + AluSx SINE Alu 1 292 -20 343 98 0 0 chr9 80669151 80669202 -61602242 + (TAAA)n Simple_repeat Simple_repeat 2 88 0 22 0 0 0 chr9 80669202 80669224 -61602220 + AT_rich Low_complexity Low_complexity 1 22 0 1969 152 0 3 chr9 80669202 80669223 -61602221 + AluSx SINE Alu 292 312 0 399 215 0 43 chr9 80669560 80669653 -61601791 + MIR SINE MIR 56 144 -118 23 54 0 0 chr9 80670588 80670625 -61600819 + AT_rich Low_complexity Low_complexity 1 37 0 350 304 91 72 chr9 80670628 80670748 -61600696 - L1ME LINE L1 -426 5695 5579 1660 150 34 44 chr9 80670748 80671042 -61600402 + AluSx SINE Alu 1 291 -21 350 304 91 72 chr9 80671042 80671268 -61600176 - L1ME LINE L1 -542 5579 5337 1257 247 81 10 chr9 80671587 80672069 -61599375 + Zaphod DNA AcHobo 3485 4000 -31 247 299 0 11 chr9 80672082 80672169 -61599275 + CT-rich Low_complexity Low_complexity 4 89 0 26 50 0 0 chr9 80672204 80672244 -61599200 + AT_rich Low_complexity Low_complexity 1 40 0 684 254 34 6 chr9 80673291 80673468 -61597976 - L2 LINE L2 0 3313 3132 291 374 66 30 chr9 80673453 80673758 -61597686 + L3 LINE CR1 1114 1429 -148 * 855 223 53 59 chr9 80673795 80674132 -61597312 + L1ME2 LINE L1 5800 6134 -30 321 207 35 9 chr9 80674170 80674286 -61597158 + GA-rich Low_complexity Low_complexity 2 120 0 328 294 5 59 chr9 80674315 80674502 -61596942 + L1MC4 LINE L1 7826 8002 -40 218 329 29 76 chr9 80674545 80674755 -61596689 - MIR SINE MIR 0 262 63 567 142 19 0 chr9 80674775 80674881 -61596563 + MER3 DNA MER1_type 46 153 -56 1139 129 74 146 chr9 80674914 80675022 -61596422 + MER3 DNA MER1_type 2238 2352 -272 1732 155 17 24 chr9 80675022 80675313 -61596131 - AluJo SINE Alu -23 289 1 1139 129 74 146 chr9 80675313 80675343 -61596101 + MER3 DNA MER1_type 2352 2383 -241 1560 178 46 18 chr9 80675343 80675624 -61595820 - AluJo SINE Alu -23 289 1 1139 129 74 146 chr9 80675624 80675860 -61595584 + MER3 DNA MER1_type 2383 2634 10 2250 132 25 6 chr9 80675860 80676217 -61595227 - THE1B LTR MaLR 0 364 1 9802 117 33 45 chr9 80676217 80677397 -61594047 - THE1B-int LTR MaLR -1 1579 387 1532 136 4 25 chr9 80677397 80677633 -61593811 + AluSx SINE Alu 60 290 -22 1934 166 0 0 chr9 80677633 80677934 -61593510 + AluSx SINE Alu 1 301 -11 9802 117 33 45 chr9 80677934 80678349 -61593095 - THE1B-int LTR MaLR -1191 389 1 2074 116 87 3 chr9 80678349 80678684 -61592760 - THE1B LTR MaLR 0 364 2 1139 129 74 146 chr9 80678684 80678722 -61592722 + MER3 DNA MER1_type 2585 2624 0 563 177 48 16 chr9 80678870 80678994 -61592450 - MIR SINE MIR -24 238 111 2280 98 3 3 chr9 80679543 80679849 -61591595 - AluSp SINE Alu -7 306 1 2291 102 7 0 chr9 80679865 80680159 -61591285 - AluSc SINE Alu -13 296 1 344 121 121 0 chr9 80680748 80680814 -61590630 + MER5A DNA MER1_type 1 74 -115 2210 94 3 10 chr9 80680818 80681116 -61590328 + AluSx SINE Alu 3 298 -14 643 219 47 0 chr9 80681234 80681403 -61590041 + MER97a DNA MER1_type? 1 177 -717 447 92 0 0 chr9 80683147 80683212 -61588232 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 2005 125 0 4 chr9 80683217 80683497 -61587947 - AluSp SINE Alu -34 279 1 2279 172 18 0 chr9 80684101 80684510 -61586934 - MSTB1 LTR MaLR -1 419 15 6019 187 72 16 chr9 80684531 80684845 -61586599 - MSTB1-int LTR MaLR 0 1651 1356 1483 195 18 81 chr9 80684845 80685178 -61586266 - AluJb SINE Alu 0 312 1 6019 187 72 16 chr9 80685178 80685912 -61585532 - MSTB1-int LTR MaLR -295 1356 522 2163 75 0 78 chr9 80685912 80686233 -61585211 - AluY SINE Alu -5 306 11 6019 187 72 16 chr9 80686233 80686410 -61585034 - MSTB1-int LTR MaLR -1129 522 356 1715 166 22 0 chr9 80686757 80687076 -61584368 - MSTB1-int LTR MaLR -1325 326 1 2299 161 17 24 chr9 80687076 80687491 -61583953 - MSTB1 LTR MaLR 0 432 21 1573 178 72 49 chr9 80687802 80687851 -61583593 - MLT2C1 LTR ERVL 0 397 351 420 20 0 0 chr9 80687851 80687900 -61583544 + (TG)n Simple_repeat Simple_repeat 2 50 0 1573 178 72 49 chr9 80687900 80688238 -61583206 - MLT2C1 LTR ERVL -46 351 1 194 329 115 40 chr9 80688286 80689028 -61582416 - L2 LINE L2 -338 2975 2173 201 196 0 22 chr9 80689047 80689093 -61582351 + A-rich Low_complexity Low_complexity 2 46 0 191 301 110 14 chr9 80689262 80689335 -61582109 - L2 LINE L2 -19 3253 3174 1190 142 5 5 chr9 80689388 80689578 -61581866 - L1PA16 LINE L1 -9 6157 5968 4967 136 20 20 chr9 80689589 80691304 -61580140 - L1PA15 LINE L1 -1 6164 4460 2144 150 0 0 chr9 80693251 80693558 -61577886 - AluSx SINE Alu -5 307 1 31 0 0 0 chr9 80694200 80694231 -61577213 + AT_rich Low_complexity Low_complexity 1 31 0 2779 182 35 7 chr9 80694743 80695287 -61576157 + MER89 LTR ERV1 1 559 0 243 258 43 0 chr9 80695483 80695576 -61575868 - Charlie7 DNA MER1_type 0 2612 2516 2265 153 38 19 chr9 80695614 80696038 -61575406 - MSTB1 LTR MaLR 0 432 1 557 224 162 56 chr9 80696058 80696361 -61575083 - Charlie7 DNA MER1_type -1894 718 384 1718 165 14 21 chr9 80696410 80696701 -61574743 + AluJo SINE Alu 1 289 -23 21 0 0 0 chr9 80698425 80698446 -61572998 + AT_rich Low_complexity Low_complexity 1 21 0 256 253 60 12 chr9 80699859 80699942 -61571502 - MIR SINE MIR -72 190 104 2145 119 3 3 chr9 80700114 80700408 -61571036 + AluSc SINE Alu 1 294 -15 286 301 65 8 chr9 80701006 80701129 -61570315 - LTR16C LTR ERVL 0 491 362 1008 207 37 97 chr9 80701577 80701614 -61569830 - LTR37A LTR ERV1 0 426 388 1595 182 37 17 chr9 80701614 80701910 -61569534 + AluJo SINE Alu 4 305 -7 1008 207 37 97 chr9 80701910 80701954 -61569490 - LTR37A LTR ERV1 -38 388 343 2099 138 3 0 chr9 80701954 80702259 -61569185 + AluSx SINE Alu 1 306 -6 1008 207 37 97 chr9 80702259 80702610 -61568834 - LTR37A LTR ERV1 -83 343 19 1002 222 57 0 chr9 80702775 80702987 -61568457 + MER58A DNA MER1_type 1 224 0 213 132 0 0 chr9 80704053 80704091 -61567353 + (TTA)n Simple_repeat Simple_repeat 3 40 0 3065 135 115 63 chr9 80704370 80704521 -61566923 - MER39 LTR ERV1 -4 703 561 2256 90 33 0 chr9 80704521 80704820 -61566624 + AluSx SINE Alu 1 309 -3 3065 135 115 63 chr9 80704820 80705336 -61566108 - MER39 LTR ERV1 -146 561 1 337 271 252 0 chr9 80705376 80705527 -61565917 + MIR SINE MIR 49 237 -25 1641 168 0 4 chr9 80705527 80705809 -61565635 - AluJb SINE Alu 0 314 34 358 183 0 0 chr9 80707260 80707320 -61564124 + L2 LINE L2 3199 3258 -14 213 268 18 0 chr9 80707392 80707448 -61563996 + GA-rich Low_complexity Low_complexity 4 60 0 5389 109 9 40 chr9 80707834 80708729 -61562715 + MER4D LTR ERV1 1 867 -5 216 169 17 34 chr9 80708729 80708788 -61562656 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 932 222 43 4 chr9 80708848 80709082 -61562362 - MLT1G1 LTR MaLR -352 243 1 1307 123 0 29 chr9 80709532 80709775 -61561669 - L1MA4 LINE L1 -5 6295 6060 430 292 13 50 chr9 80709890 80710080 -61561364 + MIR SINE MIR 12 192 -62 283 284 26 71 chr9 80710075 80710230 -61561214 + MIR SINE MIR 113 260 -2 * 490 249 54 49 chr9 80712884 80713089 -61558355 - LTR16B LTR ERVL -26 438 233 388 294 49 130 chr9 80713252 80713942 -61557502 + L1MEd LINE L1 2 635 -5484 305 293 9 17 chr9 80713952 80714068 -61557376 + L1MEd LINE L1 2249 2363 -3766 1469 234 25 0 chr9 80714068 80714188 -61557256 + AluJo SINE Alu 1 117 -195 543 31 0 0 chr9 80714188 80714253 -61557191 + (CTA)n Simple_repeat Simple_repeat 1 65 0 1469 234 25 0 chr9 80714253 80714418 -61557026 + AluJo SINE Alu 117 293 -19 1578 298 102 13 chr9 80714420 80715160 -61556284 - L2 LINE L2 -167 3146 2342 357 291 28 0 chr9 80715351 80715492 -61555952 + L1MEd LINE L1 2670 2814 -3315 302 238 46 118 chr9 80716490 80716839 -61554605 - L1ME4a LINE L1 0 6121 5798 595 244 16 0 chr9 80717381 80717508 -61553936 + MIR SINE MIR 60 188 -74 685 241 41 6 chr9 80717591 80717761 -61553683 + MIR SINE MIR 8 183 -79 351 192 0 0 chr9 80717762 80717835 -61553609 + (TA)n Simple_repeat Simple_repeat 2 74 0 972 144 59 30 chr9 80718746 80718948 -61552496 - L1PB4 LINE L1 0 6156 5949 649 191 151 55 chr9 80720351 80720550 -61550894 - MER20 DNA MER1_type 0 219 2 303 331 58 17 chr9 80720824 80720996 -61550448 - MIR SINE MIR -44 218 40 301 193 57 23 chr9 80722018 80722106 -61549338 - L1MC5 LINE L1 -48 7913 7823 750 243 233 26 chr9 80722111 80722601 -61548843 - MLT1E LTR MaLR 0 593 3 456 237 162 0 chr9 80722604 80722777 -61548667 - L1MC5 LINE L1 -158 7803 7603 463 186 124 25 chr9 80722829 80722990 -61548454 - L1MC5 LINE L1 -444 7517 7341 966 205 104 20 chr9 80722997 80723295 -61548149 + HsTC2 DNA Tc2 15 337 -1561 591 216 161 0 chr9 80723315 80723477 -61547967 + HsTC2 DNA Tc2 1164 1351 -547 2406 90 0 6 chr9 80723543 80723854 -61547590 + AluSc SINE Alu 1 309 0 312 211 58 26 chr9 80724615 80724771 -61546673 + HsTC2 DNA Tc2 1737 1897 -1 583 309 31 31 chr9 80725115 80725474 -61545970 - HsTC2 DNA Tc2 -1030 868 510 570 194 39 127 chr9 80725527 80725810 -61545634 - HsTC2 DNA Tc2 -1636 262 5 346 280 124 32 chr9 80725812 80725998 -61545446 - MIR SINE MIR 0 262 60 592 176 24 16 chr9 80726081 80726206 -61545238 + MER3 DNA MER1_type 3 128 -81 198 91 0 0 chr9 80726209 80726242 -61545202 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 31 44 0 0 chr9 80726621 80726666 -61544778 + AT_rich Low_complexity Low_complexity 1 45 0 427 288 0 49 chr9 80726705 80726867 -61544577 - MIR SINE MIR -63 145 22 2015 93 4 4 chr9 80726948 80727226 -61544218 + AluSg SINE Alu 1 278 -32 415 202 19 0 chr9 80727226 80727330 -61544114 + GA-rich Low_complexity Low_complexity 3 108 0 181 294 0 0 chr9 80728631 80728682 -61542762 - L2 LINE L2 -7 3306 3256 31 0 0 0 chr9 80729286 80729317 -61542127 + AT_rich Low_complexity Low_complexity 1 31 0 1790 152 0 50 chr9 80729971 80730274 -61541170 - AluJo SINE Alu -24 288 1 21 36 0 0 chr9 80730597 80730625 -61540819 + AT_rich Low_complexity Low_complexity 1 28 0 2191 82 4 0 chr9 80730657 80730938 -61540506 + AluSg1 SINE Alu 23 304 -5 1850 126 98 0 chr9 80731072 80731349 -61540095 - AluSq SINE Alu -9 304 1 207 222 0 0 chr9 80731751 80731796 -61539648 + L2 LINE L2 3264 3308 -5 188 162 44 29 chr9 80731960 80732028 -61539416 + GA-rich Low_complexity Low_complexity 4 72 0 238 372 105 34 chr9 80732705 80732971 -61538473 + L2 LINE L2 2807 3091 -181 599 307 57 35 chr9 80733096 80733497 -61537947 - MLT1K LTR MaLR -56 532 123 2193 92 10 3 chr9 80734125 80734419 -61537025 + AluSg SINE Alu 1 296 -14 2474 87 3 0 chr9 80734660 80734971 -61536473 - AluSp SINE Alu -1 312 1 531 279 98 29 chr9 80735057 80735261 -61536183 + MIR SINE MIR 28 245 -17 758 190 152 0 chr9 80736104 80736315 -61535129 - LTR37A LTR ERV1 -54 372 130 874 176 113 67 chr9 80736328 80736657 -61534787 - L1MC4 LINE L1 -87 7955 7612 24 32 0 0 chr9 80737856 80737887 -61533557 + AT_rich Low_complexity Low_complexity 1 31 0 24 85 0 0 chr9 80738683 80738742 -61532702 + AT_rich Low_complexity Low_complexity 1 59 0 2060 136 0 0 chr9 80738823 80739117 -61532327 + AluSx SINE Alu 1 294 -18 2956 273 132 46 chr9 80741890 80742434 -61529010 - L2 LINE L2 -200 3113 2617 267 79 0 0 chr9 80742434 80742472 -61528972 + (TG)n Simple_repeat Simple_repeat 1 38 0 2956 273 132 46 chr9 80742472 80742561 -61528883 - L2 LINE L2 -696 2617 2537 830 188 15 66 chr9 80742561 80742629 -61528815 + MER5A DNA MER1_type 1 71 -118 2442 73 7 3 chr9 80742629 80742932 -61528512 - AluY SINE Alu -7 304 1 830 188 15 66 chr9 80742932 80743060 -61528384 + MER5A DNA MER1_type 71 187 -2 2956 273 132 46 chr9 80743060 80744038 -61527406 - L2 LINE L2 -776 2537 269 5815 237 17 78 chr9 80744148 80746549 -61524895 + L1P LINE L1 1937 4191 -1955 1154 139 6 6 chr9 80746649 80746829 -61524615 + L1PA16 LINE L1 5978 6157 -9 191 301 110 14 chr9 80746882 80746955 -61524489 + L2 LINE L2 3174 3253 -19 201 196 0 22 chr9 80747124 80747170 -61524274 + T-rich Low_complexity Low_complexity 2 46 0 195 335 127 42 chr9 80747189 80747930 -61523514 + L2 LINE L2 2173 2976 -338 1573 178 72 49 chr9 80747978 80748316 -61523128 + MLT2C1 LTR ERVL 1 351 -46 420 20 0 0 chr9 80748316 80748365 -61523079 + (CA)n Simple_repeat Simple_repeat 2 50 0 1573 178 72 49 chr9 80748365 80748414 -61523030 + MLT2C1 LTR ERVL 351 397 0 2299 161 17 24 chr9 80748725 80749140 -61522304 + MSTB1 LTR MaLR 21 432 0 1715 166 22 0 chr9 80749140 80749459 -61521985 + MSTB1-int LTR MaLR 1 326 -1325 5613 193 17 21 chr9 80749806 80749983 -61521461 + MSTB1-int LTR MaLR 357 533 -1118 2163 75 0 78 chr9 80749983 80750304 -61521140 + AluY SINE Alu 11 306 -5 5613 193 17 21 chr9 80750304 80751039 -61520405 + MSTB1-int LTR MaLR 533 1337 -314 1483 195 18 81 chr9 80751039 80751372 -61520072 + AluJb SINE Alu 1 312 0 5613 193 17 21 chr9 80751372 80751686 -61519758 + MSTB1-int LTR MaLR 1337 1651 0 2279 172 18 0 chr9 80751707 80752116 -61519328 + MSTB1 LTR MaLR 15 363 -1 2005 125 0 4 chr9 80752720 80753000 -61518444 + AluSp SINE Alu 1 279 -34 447 92 0 0 chr9 80753005 80753070 -61518374 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 643 219 47 0 chr9 80754814 80754983 -61516461 - MER97c DNA MER1_type? -913 177 1 237 308 108 73 chr9 80755021 80755101 -61516343 + L2 LINE L2 2534 2610 -704 2219 107 0 7 chr9 80755101 80755401 -61516043 - AluSx SINE Alu -14 298 1 237 308 108 73 chr9 80755401 80755606 -61515838 + L2 LINE L2 2610 2829 -485 1161 186 144 29 chr9 80755636 80755985 -61515459 - MLT1B LTR MaLR 0 396 2 623 321 98 33 chr9 80755992 80756360 -61515084 + L2 LINE L2 2921 3312 -1 405 353 41 0 chr9 80756549 80756770 -61514674 - L1MC/D LINE L1 -2225 5583 5354 271 276 20 0 chr9 80757060 80757158 -61514286 + L1MC/D LINE L1 5668 5767 -2041 2054 174 5 46 chr9 80757275 80757706 -61513738 - L1MC1 LINE L1 -17 6316 5904 5956 245 29 11 chr9 80758414 80761207 -61510237 - L1PA13 LINE L1 -2670 4127 1283 1928 310 41 28 chr9 80761273 80762101 -61509343 - L1PA13 LINE L1 -5948 839 1 26 30 0 0 chr9 80762284 80762317 -61509127 + AT_rich Low_complexity Low_complexity 1 33 0 833 158 0 0 chr9 80762563 80762690 -61508754 + FLAM_C SINE Alu 1 127 -16 1804 155 14 7 chr9 80762905 80763183 -61508261 - AluSx SINE Alu -32 280 1 677 143 18 0 chr9 80763183 80763295 -61508149 - Tigger1 DNA MER2_type -236 2182 2069 7912 128 37 5 chr9 80763304 80764643 -61506801 - Tigger1 DNA MER2_type -793 1625 244 508 202 9 35 chr9 80764682 80764796 -61506648 - MER2 DNA MER2_type -234 111 1 1168 171 4 50 chr9 80764829 80765087 -61506357 - Tigger1 DNA MER2_type -2172 246 1 878 189 0 0 chr9 80765087 80765262 -61506182 - L1M3 LINE L1 -396 6285 6111 * 902 239 49 35 chr9 80765256 80765541 -61505903 - L1M3 LINE L1 -2281 4363 4075 * 2211 227 24 10 chr9 80765539 80766125 -61505319 - L1M3 LINE L1 -4603 2043 1450 457 247 8 21 chr9 80766130 80766300 -61505144 - L1M3 LINE L1 -5030 1538 1039 337 312 91 54 chr9 80766742 80766963 -61504481 - L1M3 LINE L1 -6312 230 2 227 278 175 48 chr9 80768124 80768250 -61503194 + MIR3 SINE MIR 10 151 -57 278 307 40 20 chr9 80768396 80768497 -61502947 - MIR SINE MIR -86 122 20 9762 28 9 0 chr9 80770198 80771455 -61499989 - L1PA3 LINE L1 -2717 3429 2161 17600 27 0 0 chr9 80771454 80774157 -61497287 + L1PA3 LINE L1 3439 6142 -13 2689 41 0 0 chr9 80774157 80774183 -61497261 + L1P LINE L1 3439 6167 -743 369 145 87 0 chr9 80774422 80774491 -61496953 + Charlie3 DNA MER1_type 1 75 -2635 2506 226 29 58 chr9 80774491 80775282 -61496162 - L1M4 LINE L1 -1457 4689 3922 851 260 57 93 chr9 80775622 80776327 -61495117 - L2 LINE L2 0 3313 2630 563 212 62 34 chr9 80776401 80776547 -61494897 + MER58C DNA MER1_type 36 185 -30 195 254 70 28 chr9 80776856 80776927 -61494517 - MIR SINE MIR -50 212 139 1579 132 69 132 chr9 80777334 80777712 -61493732 + MER101 LTR ERV1 1 354 -120 2646 99 0 109 chr9 80777712 80777794 -61493650 + L1PA15-16 LINE L1 1509 1598 -5251 2223 96 0 17 chr9 80777794 80778087 -61493357 + AluSg SINE Alu 16 303 -7 2646 99 0 109 chr9 80778087 80778517 -61492927 + L1PA15-16 LINE L1 1598 1965 -4884 23 0 0 0 chr9 80778929 80778952 -61492492 + AT_rich Low_complexity Low_complexity 1 23 0 1488 79 0 100 chr9 80779788 80779923 -61491521 - L1PA6 LINE L1 0 6154 6052 8457 71 18 31 chr9 80779923 80781008 -61490436 + MER11C LTR ERVK 1 1071 0 1488 79 0 100 chr9 80781008 80781112 -61490332 - L1PA6 LINE L1 -102 6052 5939 210 311 14 0 chr9 80781549 80781623 -61489821 - MIR SINE MIR -167 95 21 28 0 0 0 chr9 80782427 80782455 -61488989 + GC_rich Low_complexity Low_complexity 1 28 0 561 15 0 0 chr9 80785920 80785986 -61485458 + (TG)n Simple_repeat Simple_repeat 2 67 0 268 310 84 80 chr9 80787048 80787287 -61484157 - L2 LINE L2 -18 3254 3015 205 338 59 36 chr9 80787483 80787702 -61483742 - L2 LINE L2 -546 2768 2545 823 289 70 47 chr9 80787861 80788346 -61483098 - L2 LINE L2 0 3313 2818 237 132 0 0 chr9 80788518 80788556 -61482888 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 1495 218 31 23 chr9 80788563 80788915 -61482529 + MLT1A2 LTR MaLR 4 358 -16 3047 136 27 18 chr9 80788915 80789427 -61482017 + MLT2A2 LTR ERVL 1 515 0 189 178 0 0 chr9 80789523 80789568 -61481876 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 661 318 5 5 chr9 80790509 80790704 -61480740 + MIR SINE MIR 7 201 -61 189 290 29 14 chr9 80791304 80791373 -61480071 - MER5A DNA MER1_type -94 95 26 693 266 19 43 chr9 80792391 80792598 -61478846 - MIR SINE MIR -21 241 40 873 220 6 0 chr9 80793169 80793346 -61478098 - MLT1D LTR MaLR 0 505 328 29 47 0 0 chr9 80794186 80794229 -61477215 + AT_rich Low_complexity Low_complexity 1 43 0 836 280 111 43 chr9 80794625 80795274 -61476170 + L1MC4a LINE L1 5263 5955 -1853 1036 207 4 39 chr9 80795717 80795949 -61475495 + AluJb SINE Alu 86 309 -3 787 255 99 35 chr9 80797405 80797918 -61473526 + L1MEd LINE L1 785 1235 -4893 959 226 15 19 chr9 80798471 80798737 -61472707 + L1MA4 LINE L1 6036 6300 0 244 321 77 0 chr9 80798826 80799022 -61472422 + L1MEd LINE L1 2095 2305 -3824 680 273 51 32 chr9 80799068 80799438 -61472006 + L1M4 LINE L1 4439 4815 -1331 230 222 71 30 chr9 80799571 80799670 -61471774 + L1M4 LINE L1 5130 5232 -914 240 306 0 0 chr9 80800585 80800657 -61470787 + MARNA DNA Mariner 465 536 -50 267 336 86 7 chr9 80800821 80800961 -61470483 - MIR3 SINE MIR -8 200 50 436 313 88 16 chr9 80801249 80801441 -61470003 + L2 LINE L2 2804 3009 -304 322 196 20 33 chr9 80801570 80801723 -61469721 + CT-rich Low_complexity Low_complexity 2 152 0 1969 258 90 6 chr9 80802510 80803178 -61468266 + L1M4 LINE L1 3740 4463 -1683 1677 100 31 50 chr9 80803982 80804241 -61467203 + AluSc SINE Alu 52 305 -4 412 254 141 73 chr9 80804913 80805240 -61466204 - L1M4 LINE L1 -6104 438 90 236 213 16 0 chr9 80805760 80805821 -61465623 + (CA)n Simple_repeat Simple_repeat 2 63 0 2308 98 0 7 chr9 80805830 80806137 -61465307 - AluSq SINE Alu -8 305 1 352 215 56 37 chr9 80806209 80806316 -61465128 - MER63A DNA MER1_type -23 187 79 750 248 85 73 chr9 80806813 80807256 -61464188 + L1MC4 LINE L1 7532 7983 -59 2611 14 0 0 chr9 80807256 80807539 -61463905 - AluYb8 SINE Alu -1 317 35 750 248 85 73 chr9 80807539 80807599 -61463845 + L1MC4 LINE L1 7983 8041 -1 1617 247 84 44 chr9 80807883 80808499 -61462945 - ERVL LTR ERVL -4240 1524 884 855 301 105 18 chr9 80808600 80809038 -61462406 - ERVL LTR ERVL -4978 687 207 486 329 20 0 chr9 80809104 80809250 -61462194 - L2 LINE L2 -2 3270 3122 31 26 0 0 chr9 80811365 80811403 -61460041 + AT_rich Low_complexity Low_complexity 1 38 0 2289 170 32 0 chr9 80811703 80812079 -61459365 + MLT1B LTR MaLR 3 390 0 225 299 35 58 chr9 80812086 80812173 -61459271 + MIR SINE MIR 30 114 -94 1144 248 75 40 chr9 80812297 80812753 -61458691 + MLT1K LTR MaLR 5 476 0 181 200 25 0 chr9 80813856 80813896 -61457548 - L2 LINE L2 -2 3311 3271 232 250 0 33 chr9 80814215 80814275 -61457169 - MER96B DNA MER1_type? -11 406 349 761 203 51 6 chr9 80814294 80814452 -61456992 + MER96B DNA MER1_type? 251 415 -2 276 77 0 0 chr9 80814566 80814605 -61456839 + (TG)n Simple_repeat Simple_repeat 2 40 0 1814 176 0 7 chr9 80814813 80815108 -61456336 + AluJb SINE Alu 1 293 -19 186 263 66 53 chr9 80816081 80816157 -61455287 + MIR SINE MIR 24 100 -108 271 238 109 34 chr9 80817066 80817213 -61454231 - L1ME4a LINE L1 -224 5897 5740 2328 105 0 0 chr9 80817604 80817910 -61453534 - AluSc SINE Alu -3 306 1 1367 282 116 15 chr9 80818006 80818594 -61452850 + MLT2F LTR ERVL 3 649 -14 323 359 82 12 chr9 80819054 80819224 -61452220 - MER91A DNA MER1_type 0 196 15 235 267 47 35 chr9 80819232 80819318 -61452126 + MLT1K LTR MaLR 85 171 -417 2184 169 32 3 chr9 80819462 80819841 -61451603 + MLT1B LTR MaLR 1 390 0 205 196 0 118 chr9 80820398 80820449 -61450995 - MER5A DNA MER1_type -1 188 144 22 0 0 0 chr9 80821515 80821537 -61449907 + AT_rich Low_complexity Low_complexity 1 22 0 337 277 177 0 chr9 80824383 80824524 -61446920 + MIR SINE MIR 49 214 -48 201 74 0 0 chr9 80824604 80824631 -61446813 + (TG)n Simple_repeat Simple_repeat 2 28 0 366 268 61 83 chr9 80825540 80825768 -61445676 + L1MEd LINE L1 65 287 -5832 966 269 36 66 chr9 80826002 80826701 -61444743 + L1MEd LINE L1 572 1249 -4870 3221 278 82 41 chr9 80827456 80827988 -61443456 + L1M4 LINE L1 2640 3149 -2997 1722 174 13 17 chr9 80827988 80828286 -61443158 + AluJo SINE Alu 1 297 -15 3221 278 82 41 chr9 80828286 80830003 -61441441 + L1M4 LINE L1 3149 4988 -1158 186 71 0 0 chr9 80830003 80830031 -61441413 + (CA)n Simple_repeat Simple_repeat 1 28 0 3221 278 82 41 chr9 80830031 80830101 -61441343 + L1M4 LINE L1 4988 5054 -1092 234 269 160 26 chr9 80830207 80830363 -61441081 - LTR33A LTR ERVL -342 181 5 180 0 0 0 chr9 80830650 80830670 -61440774 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 183 324 93 14 chr9 80831226 80831365 -61440079 + MIR SINE MIR 63 212 -50 663 290 45 68 chr9 80831481 80831639 -61439805 - MLT1I LTR MaLR -3 406 246 5072 104 28 23 chr9 80831639 80832415 -61439029 - LTR17 LTR ERV1 0 780 1 663 290 45 68 chr9 80832415 80832653 -61438791 - MLT1I LTR MaLR -163 246 19 253 197 0 70 chr9 80833152 80833223 -61438221 + MIR SINE MIR 185 250 -12 515 134 21 10 chr9 80833411 80833508 -61437936 + MER4A LTR ERV1 1 98 -566 1707 119 3 74 chr9 80833508 80833880 -61437564 + MER4A LTR ERV1 261 664 0 467 211 0 21 chr9 80834337 80834432 -61437012 - MLT2E LTR ERVL -500 128 36 736 320 9 18 chr9 80834498 80834723 -61436721 - L2 LINE L2 -283 3030 2808 527 280 34 6 chr9 80835638 80835813 -61435631 + LTR16C LTR ERVL 302 481 -10 646 194 0 45 chr9 80835874 80836008 -61435436 - MIR SINE MIR -70 192 65 222 150 0 0 chr9 80836641 80836681 -61434763 + (TC)n Simple_repeat Simple_repeat 1 40 0 257 250 53 0 chr9 80837250 80837326 -61434118 - MIR SINE MIR -65 197 118 216 280 0 0 chr9 80838504 80838554 -61432890 + MER5B DNA MER1_type 4 53 -125 5977 91 7 10 chr9 80838556 80839554 -61431890 - L1PA7 LINE L1 0 6300 5347 3539 148 26 26 chr9 80839552 80839607 -61431837 - L1MA3 LINE L1 -185 6120 6066 * 2147 115 0 0 chr9 80839607 80839893 -61431551 - AluSx SINE Alu -26 286 1 3539 148 26 26 chr9 80839893 80840527 -61430917 - L1MA3 LINE L1 -238 6067 5431 336 315 99 9 chr9 80840528 80840639 -61430805 + MER5B DNA MER1_type 57 177 -1 244 231 0 175 chr9 80841023 80841111 -61430333 + MER94 DNA DNA 17 72 -62 3787 74 2 0 chr9 80841111 80841611 -61429833 + L1PA7 LINE L1 5654 6154 0 244 231 0 175 chr9 80841611 80841665 -61429779 + MER94 DNA DNA 72 134 0 2025 104 0 0 chr9 80841800 80842060 -61429384 - AluSx SINE Alu -4 308 49 703 281 143 20 chr9 80842069 80842500 -61428944 + MER77 LTR ERV1 119 599 -6 279 234 39 0 chr9 80842714 80842791 -61428653 + LTR50 LTR ERVL 716 795 0 21 0 0 0 chr9 80842821 80842842 -61428602 + AT_rich Low_complexity Low_complexity 1 21 0 2036 194 33 73 chr9 80843278 80843850 -61427594 + MLT2B3 LTR ERVL 6 554 0 1317 217 18 64 chr9 80844202 80844349 -61427095 - MER74A LTR ERVL 0 558 406 1483 218 12 116 chr9 80844349 80844394 -61427050 - MLT2B1 LTR ERVL -1 519 471 378 0 0 0 chr9 80844394 80844436 -61427008 + (TG)n Simple_repeat Simple_repeat 1 42 0 1483 218 12 116 chr9 80844436 80844969 -61426475 - MLT2B1 LTR ERVL -49 471 1 1317 217 18 64 chr9 80844969 80845213 -61426231 - MER74A LTR ERVL -152 406 185 264 367 71 6 chr9 80845557 80845726 -61425718 + MIR SINE MIR 6 185 -77 318 154 39 115 chr9 80845740 80845844 -61425600 + MER21B LTR ERV1 1 96 -767 1279 208 148 33 chr9 80845853 80846286 -61425158 - MER39 LTR ERV1 -5 682 219 267 203 108 14 chr9 80846276 80846350 -61425094 - LTR48B LTR ERV1 -542 102 22 * 3596 206 41 26 chr9 80846372 80847193 -61424251 + MER21B LTR ERV1 19 852 -11 2245 98 20 0 chr9 80847538 80847835 -61423609 + AluSx SINE Alu 1 303 -9 220 215 46 15 chr9 80849331 80849396 -61422048 + MER5B DNA MER1_type 94 160 -18 189 231 0 77 chr9 80849479 80849531 -61421913 - L2 LINE L2 -16 3256 3209 446 268 34 88 chr9 80849619 80849824 -61421620 - MIR SINE MIR -36 226 33 745 238 77 0 chr9 80850780 80850961 -61420483 + MIR SINE MIR 7 201 -61 523 325 58 12 chr9 80851196 80851439 -61420005 - MIR SINE MIR -7 255 2 265 136 220 0 chr9 80851808 80851867 -61419577 - MER5A DNA MER1_type -78 111 40 230 337 12 0 chr9 80851888 80851974 -61419470 - MIR3 SINE MIR -37 171 85 363 344 48 21 chr9 80852669 80852858 -61418586 - MIR SINE MIR -48 214 21 231 36 0 0 chr9 80852917 80852945 -61418499 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1833 120 39 0 chr9 80853399 80853658 -61417786 + AluSx SINE Alu 5 273 -39 261 0 0 0 chr9 80853658 80853687 -61417757 + (TC)n Simple_repeat Simple_repeat 1 29 0 273 216 20 20 chr9 80853687 80853789 -61417655 + (TA)n Simple_repeat Simple_repeat 2 103 0 636 69 73 15 chr9 80853809 80854072 -61417372 + (TA)n Simple_repeat Simple_repeat 1 278 0 40 37 0 0 chr9 80854072 80854126 -61417318 + AT_rich Low_complexity Low_complexity 1 54 0 556 10 127 0 chr9 80854126 80854331 -61417113 + (TA)n Simple_repeat Simple_repeat 1 231 0 428 117 0 0 chr9 80854356 80854416 -61417028 - MER20 DNA MER1_type -157 62 3 2299 170 40 40 chr9 80855955 80856394 -61415050 + MLT1D LTR MaLR 1 442 -63 1657 148 32 58 chr9 80856394 80856705 -61414739 + AluJb SINE Alu 1 303 -9 2299 170 40 40 chr9 80856705 80856770 -61414674 + MLT1D LTR MaLR 441 505 0 25 51 0 0 chr9 80856891 80856930 -61414514 + AT_rich Low_complexity Low_complexity 1 39 0 323 294 206 12 chr9 80856960 80857120 -61414324 + MIR SINE MIR 2 192 -70 2321 235 55 4 chr9 80857209 80857770 -61413674 + MLT1G LTR MaLR 1 590 0 370 235 34 8 chr9 80859247 80859366 -61412078 - MER69 DNA AcHobo -24 2502 2381 286 160 20 0 chr9 80859523 80859573 -61411871 - MER69 DNA AcHobo -2475 51 1 238 291 70 12 chr9 80859608 80859694 -61411750 - MIR SINE MIR 0 262 172 27 0 0 0 chr9 80859770 80859797 -61411647 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr9 80859976 80860000 -61411444 + AT_rich Low_complexity Low_complexity 1 24 0 377 264 28 66 chr9 80860948 80861130 -61410314 - MER69A DNA AcHobo 0 177 3 1081 188 26 4 chr9 80861404 80861633 -61409811 + MER96B DNA MER1_type? 2 235 -182 737 287 60 45 chr9 80862198 80862529 -61408915 - L2 LINE L2 -44 3269 2934 276 211 28 14 chr9 80862702 80862773 -61408671 + CT-rich Low_complexity Low_complexity 4 75 0 772 283 30 40 chr9 80862901 80863344 -61408100 - L1MC/D LINE L1 -741 5425 5367 849 209 5 41 chr9 80863411 80863607 -61407837 - MER91B DNA MER1_type -1 189 1 268 265 17 51 chr9 80864040 80864157 -61407287 - MIR SINE MIR -10 252 140 361 336 8 8 chr9 80864670 80864795 -61406649 - MIR3 SINE MIR -14 194 70 197 394 0 40 chr9 80864850 80864949 -61406495 + MIR SINE MIR 36 130 -78 180 0 0 0 chr9 80865003 80865023 -61406421 + (TTA)n Simple_repeat Simple_repeat 2 21 0 228 239 0 55 chr9 80865959 80866068 -61405376 + CT-rich Low_complexity Low_complexity 2 104 0 1488 210 7 7 chr9 80866738 80867038 -61404406 - AluJb SINE Alu -11 301 2 230 279 15 0 chr9 80867243 80867311 -61404133 - MER94 DNA DNA 0 134 66 806 312 76 7 chr9 80867738 80867840 -61403604 + MLT1K LTR MaLR 2 96 -492 613 211 76 53 chr9 80867840 80868011 -61403433 + MER96 DNA MER1_type 1 175 0 806 312 76 7 chr9 80868011 80868328 -61403116 + MLT1K LTR MaLR 96 450 -138 230 222 16 16 chr9 80868436 80868499 -61402945 + MLT1K LTR MaLR 517 579 -9 184 257 29 57 chr9 80868508 80868578 -61402866 - MIR SINE MIR -130 132 65 801 207 0 0 chr9 80869231 80869376 -61402068 - MER5A DNA MER1_type -44 145 1 26 0 0 0 chr9 80870551 80870577 -61400867 + AT_rich Low_complexity Low_complexity 1 26 0 481 289 61 45 chr9 80871760 80872006 -61399438 - L1M4 LINE L1 -2145 4001 3752 49 66 0 0 chr9 80872289 80872380 -61399064 + AT_rich Low_complexity Low_complexity 1 91 0 227 91 0 23 chr9 80872389 80872433 -61399011 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 1966 157 22 35 chr9 80872454 80872823 -61398621 + THE1B LTR MaLR 1 364 0 8015 101 27 2 chr9 80872823 80873987 -61397457 + THE1B-int LTR MaLR 1 1193 -387 23 0 0 0 chr9 80874011 80874034 -61397410 + AT_rich Low_complexity Low_complexity 1 23 0 958 161 52 17 chr9 80874036 80874210 -61397234 + AluJo SINE Alu 84 263 -49 905 236 82 0 chr9 80874229 80874496 -61396948 - L1MD3 LINE L1 -15 7980 7692 240 276 50 65 chr9 80874745 80875006 -61396438 - HAL1 LINE L1 -1031 1476 1220 336 275 54 40 chr9 80875063 80875212 -61396232 - L1MDa LINE L1 -5083 1457 1307 237 83 0 0 chr9 80875414 80875450 -61395994 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr9 80875688 80875716 -61395728 + AT_rich Low_complexity Low_complexity 1 28 0 199 377 0 0 chr9 80875816 80875877 -61395567 - L2 LINE L2 -108 3164 3104 318 232 161 45 chr9 80875962 80876117 -61395327 - MER97b DNA MER1_type? -877 176 4 322 283 54 42 chr9 80876533 80876699 -61394745 - MER5A DNA MER1_type -15 174 7 218 31 0 31 chr9 80877874 80877906 -61393538 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 240 331 206 12 chr9 80879048 80879208 -61392236 + MIR3 SINE MIR 16 206 -2 2191 161 66 12 chr9 80879277 80879687 -61391757 - MSTB1 LTR MaLR 0 432 1 214 266 47 16 chr9 80879910 80879974 -61391470 + L2 LINE L2 3227 3292 -21 186 339 0 0 chr9 80880501 80880557 -61390887 - MIR3 SINE MIR -7 201 146 189 302 85 47 chr9 80880872 80880978 -61390466 - MIR SINE MIR -79 129 20 23 0 0 0 chr9 80882082 80882105 -61389339 + AT_rich Low_complexity Low_complexity 1 23 0 1850 317 79 33 chr9 80882278 80883137 -61388307 - L2 LINE L2 -7 3306 2356 282 29 0 0 chr9 80883137 80883172 -61388272 + (TG)n Simple_repeat Simple_repeat 2 36 0 1850 317 79 33 chr9 80883172 80883477 -61387967 - L2 LINE L2 -957 2356 2067 247 300 100 0 chr9 80883480 80883570 -61387874 - L2 LINE L2 -2058 1256 1158 584 204 179 88 chr9 80884861 80885224 -61386220 + MLT1H1 LTR MaLR 160 555 0 750 243 179 41 chr9 80887629 80888094 -61383350 - MLT1G LTR MaLR 0 590 62 3104 176 27 0 chr9 80888822 80889369 -61382075 + MER68 LTR ERV1 1 562 0 253 273 0 15 chr9 80889922 80889988 -61381456 + (TA)n Simple_repeat Simple_repeat 1 65 0 344 259 47 0 chr9 80889989 80890074 -61381370 + L1MC4 LINE L1 6615 6703 -1339 * 349 331 113 0 chr9 80890006 80890148 -61381296 - L1MC4 LINE L1 -1339 6703 6546 405 99 14 14 chr9 80890159 80890230 -61381214 + MADE1 DNA Mariner 10 80 0 187 100 0 60 chr9 80891856 80891906 -61379538 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 563 273 80 6 chr9 80892235 80892411 -61379033 - MIR SINE MIR -62 200 12 26 0 0 0 chr9 80892822 80892848 -61378596 + AT_rich Low_complexity Low_complexity 1 26 0 2379 94 48 20 chr9 80894177 80894529 -61376915 + THE1B LTR MaLR 3 364 0 207 184 0 0 chr9 80894934 80894972 -61376472 + (CA)n Simple_repeat Simple_repeat 2 39 0 322 145 16 0 chr9 80896792 80896854 -61374590 + L1MB2 LINE L1 6102 6164 -7 210 118 0 0 chr9 80898582 80898616 -61372828 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 204 97 0 0 chr9 80899199 80899230 -61372214 + (CCA)n Simple_repeat Simple_repeat 3 33 0 227 279 36 27 chr9 80901852 80901963 -61369481 + MLT2E LTR ERVL 38 149 -479 330 26 0 0 chr9 80902485 80902524 -61368920 + (CAA)n Simple_repeat Simple_repeat 1 39 0 193 284 158 71 chr9 80902531 80902714 -61368730 + MIR SINE MIR 52 250 -12 190 287 131 74 chr9 80902730 80902852 -61368592 + L2 LINE L2 3183 3311 -2 407 235 134 8 chr9 80903789 80903908 -61367536 - L2 LINE L2 0 3313 3180 596 314 32 86 chr9 80904674 80905079 -61366365 + L2 LINE L2 2919 3301 -12 2142 133 3 0 chr9 80905163 80905465 -61365979 + AluSq SINE Alu 1 303 -10 185 263 79 61 chr9 80907939 80908053 -61363391 - L2 LINE L2 -12 3301 3186 2492 165 40 22 chr9 80908614 80909110 -61362334 + MLT1D LTR MaLR 1 505 0 2535 57 0 3 chr9 80909195 80909494 -61361950 + AluY SINE Alu 1 298 -13 437 302 106 6 chr9 80914478 80914657 -61356787 - MIR SINE MIR -6 256 60 762 235 18 18 chr9 80915294 80915464 -61355980 - MIR SINE MIR -70 192 23 223 204 0 56 chr9 80916312 80916366 -61355078 - L2 LINE L2 -2 3311 3261 1005 246 61 0 chr9 80916952 80917249 -61354195 + L1ME2 LINE L1 5671 5985 -179 734 150 68 0 chr9 80917280 80917413 -61354031 - L1PA15 LINE L1 0 6165 6024 675 165 0 0 chr9 80917413 80917534 -61353910 + L1P4 LINE L1 5561 5681 -484 498 206 26 39 chr9 80917524 80917679 -61353765 + L1ME2 LINE L1 6002 6154 -10 * 680 202 129 33 chr9 80917952 80918224 -61353220 + L1MC4a LINE L1 6858 7155 -653 284 306 0 54 chr9 80918675 80918786 -61352658 + L2 LINE L2 3168 3272 0 554 183 18 9 chr9 80920285 80920433 -61351011 - L1M3 LINE L1 -600 5580 5428 * 2636 239 43 20 chr9 80920427 80921456 -61349988 - L1M3 LINE L1 -2692 3454 2403 1001 282 106 35 chr9 80921441 80922293 -61349151 - L1MEc LINE L1 -4632 2193 1282 * 217 270 63 0 chr9 80922975 80923038 -61348406 - L2 LINE L2 -8 3305 3239 314 332 71 65 chr9 80923382 80923723 -61347721 + L2 LINE L2 2925 3293 -20 1103 174 64 4 chr9 80924174 80924438 -61347006 + MER33 DNA MER1_type 45 324 0 207 343 37 28 chr9 80924574 80924682 -61346762 - MIR SINE MIR 0 262 154 1754 201 3 35 chr9 80924789 80925157 -61346287 - L1MEc LINE L1 -6185 357 2 227 328 31 0 chr9 80925624 80925688 -61345756 - L3b LINE CR1 -1 1582 1517 388 294 14 7 chr9 80925735 80925878 -61345566 + MER103 DNA DNA 20 163 -3 570 206 109 29 chr9 80925981 80926156 -61345288 + MER53 DNA DNA 1 189 0 2285 113 0 0 chr9 80926422 80926731 -61344713 + AluSg SINE Alu 1 309 -1 804 230 20 15 chr9 80926742 80926942 -61344502 - MIR SINE MIR 0 262 62 2380 158 30 3 chr9 80927090 80927559 -61343885 - L1MC/D LINE L1 -671 5662 5175 717 255 75 74 chr9 80927549 80927699 -61343745 - L1MEc LINE L1 -4806 1590 1442 * 2426 71 10 0 chr9 80927699 80928007 -61343437 - AluY SINE Alu 0 311 1 2162 110 0 20 chr9 80928009 80928310 -61343134 - AluSg SINE Alu -13 297 3 717 255 75 74 chr9 80928310 80928835 -61342609 - L1MEc LINE L1 -4954 1442 911 21 0 0 0 chr9 80929032 80929053 -61342391 + AT_rich Low_complexity Low_complexity 1 21 0 1084 294 84 0 chr9 80929329 80929673 -61341771 + L2 LINE L2 2561 2933 -381 195 327 59 59 chr9 80931161 80931314 -61340130 + MIR SINE MIR 79 231 -31 1025 266 72 53 chr9 80931421 80931909 -61339535 - L1ME3A LINE L1 -12 6158 5662 886 269 22 52 chr9 80932072 80932436 -61339008 - L1MC4 LINE L1 -185 7857 7505 461 277 99 60 chr9 80932443 80932757 -61338687 - L1ME3A LINE L1 -495 5669 5344 1487 206 29 21 chr9 80932854 80933228 -61338216 - L1MB7 LINE L1 0 6682 6306 1008 189 29 0 chr9 80933220 80933512 -61337932 - L1MB7 LINE L1 -705 5971 5671 * 6163 236 49 51 chr9 80933515 80933618 -61337826 - L1MB7 LINE L1 -2585 4059 3957 1364 196 34 93 chr9 80933618 80933680 -61337764 - MLT2D LTR ERVL 0 414 350 297 0 0 0 chr9 80933680 80933713 -61337731 + (TG)n Simple_repeat Simple_repeat 1 33 0 1364 196 34 93 chr9 80933713 80934089 -61337355 - MLT2D LTR ERVL -64 350 2 6163 236 49 51 chr9 80934089 80937988 -61333456 - L1MB7 LINE L1 -2687 3957 27 337 316 93 30 chr9 80938006 80938154 -61333290 - L1MEc LINE L1 -4744 2394 2257 204 40 0 0 chr9 80938154 80938179 -61333265 + (TTG)n Simple_repeat Simple_repeat 3 27 0 337 316 93 30 chr9 80938179 80938587 -61332857 - L1MEc LINE L1 -4881 2257 1767 1422 180 101 13 chr9 80938587 80938903 -61332541 + MER2 DNA MER2_type 1 344 0 337 316 93 30 chr9 80938903 80939158 -61332286 - L1MEc LINE L1 -5371 1767 1530 1915 164 0 0 chr9 80939566 80939859 -61331585 - AluSx SINE Alu -19 293 1 22 0 0 0 chr9 80940617 80940639 -61330805 + AT_rich Low_complexity Low_complexity 1 22 0 315 304 63 47 chr9 80941195 80941386 -61330058 - L1MEc LINE L1 -5324 1535 1342 23 0 0 0 chr9 80942128 80942151 -61329293 + AT_rich Low_complexity Low_complexity 1 23 0 213 279 0 0 chr9 80942221 80942282 -61329162 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 221 163 20 0 chr9 80942692 80942741 -61328703 + (TA)n Simple_repeat Simple_repeat 2 51 0 26 82 0 0 chr9 80942748 80942809 -61328635 + AT_rich Low_complexity Low_complexity 1 61 0 378 332 92 23 chr9 80943066 80943283 -61328161 - MIR SINE MIR -30 232 1 23 0 0 0 chr9 80944446 80944469 -61326975 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 80944593 80944630 -61326814 + AT_rich Low_complexity Low_complexity 1 37 0 1527 149 81 48 chr9 80946220 80946515 -61324929 - AluJb SINE Alu -7 305 1 271 327 19 9 chr9 80946757 80946864 -61324580 - MIR SINE MIR -109 153 46 2027 194 70 27 chr9 80947002 80947444 -61324000 + MER21A LTR ERV1 2 462 -469 2532 120 0 8 chr9 80947444 80947803 -61323641 + THE1B LTR MaLR 2 357 -7 2193 165 25 72 chr9 80947802 80948275 -61323169 + MER21A LTR ERV1 474 924 -7 * 266 343 19 53 chr9 80949433 80949595 -61321849 + L2 LINE L2 2557 2712 -602 3163 100 20 0 chr9 80949595 80950035 -61321409 - MLT2A2 LTR ERVL -4 449 1 266 343 19 53 chr9 80950035 80950079 -61321365 + L2 LINE L2 2712 2756 -558 182 289 0 0 chr9 80950569 80950614 -61320830 - L2 LINE L2 0 3313 3269 3181 199 23 29 chr9 80951253 80951955 -61319489 - L1MB3 LINE L1 -53 6130 5433 201 236 36 0 chr9 80952273 80952328 -61319116 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 250 287 62 62 chr9 80954082 80954211 -61317233 + MIR SINE MIR 23 151 -57 880 281 87 40 chr9 80954463 80954887 -61316557 - MLT1J1 LTR MaLR 0 446 3 204 298 84 84 chr9 80955882 80956013 -61315431 - MER5A DNA MER1_type -56 133 3 305 313 82 41 chr9 80956228 80956375 -61315069 - MIR SINE MIR -8 254 102 2172 166 26 5 chr9 80956375 80956754 -61314690 - MSTB LTR MaLR 0 426 40 8290 180 50 9 chr9 80956754 80958340 -61313104 - MSTB-int LTR MaLR 0 1651 1 2294 174 39 10 chr9 80958340 80958754 -61312690 - MSTB LTR MaLR 0 426 1 259 359 106 7 chr9 80959097 80959239 -61312205 - MIR SINE MIR -86 176 21 226 258 0 32 chr9 80959442 80959535 -61311909 + A-rich Low_complexity Low_complexity 1 90 0 288 260 0 0 chr9 80960534 80960607 -61310837 - L1MA10 LINE L1 -7 6327 6255 25 0 0 0 chr9 80960822 80960847 -61310597 + AT_rich Low_complexity Low_complexity 1 25 0 3517 22 0 0 chr9 80960847 80961256 -61310188 - L1PA3 LINE L1 -3 6152 5744 30 59 0 0 chr9 80962118 80962169 -61309275 + AT_rich Low_complexity Low_complexity 1 51 0 326 325 84 30 chr9 80962363 80962532 -61308912 - MIR SINE MIR -44 218 41 1182 151 0 86 chr9 80962887 80963069 -61308375 - AluJo SINE Alu -2 310 153 2459 77 0 0 chr9 80963069 80963380 -61308064 - AluY SINE Alu 0 311 1 1182 151 0 86 chr9 80963380 80963442 -61308002 - AluJo SINE Alu -159 153 87 24 0 0 0 chr9 80964001 80964025 -61307419 + AT_rich Low_complexity Low_complexity 1 24 0 393 81 16 0 chr9 80964085 80964147 -61307297 - MER41A LTR ERV1 -92 462 400 2131 125 0 0 chr9 80964175 80964463 -61306981 - AluSx SINE Alu -24 288 1 199 93 47 23 chr9 80965801 80965835 -61305609 + (TATATG)n Simple_repeat Simple_repeat 4 41 -6 7425 130 35 33 chr9 80965835 80966237 -61305207 + HSMAR2 DNA Mariner 5 405 -897 1585 195 14 17 chr9 80966237 80966534 -61304910 - AluJo SINE Alu -12 300 5 7425 130 35 33 chr9 80966534 80967426 -61304018 + HSMAR2 DNA Mariner 405 1301 -1 199 93 47 23 chr9 80967426 80967434 -61304010 + (TATATG)n Simple_repeat Simple_repeat 41 47 0 186 43 0 0 chr9 80967452 80967475 -61303969 + (CA)n Simple_repeat Simple_repeat 2 24 0 249 209 0 0 chr9 80967477 80967544 -61303900 + (TA)n Simple_repeat Simple_repeat 1 67 0 29 28 0 0 chr9 80968153 80968189 -61303255 + AT_rich Low_complexity Low_complexity 1 36 0 312 308 103 10 chr9 80968219 80968458 -61302986 - L1ME2 LINE L1 -230 5940 5681 653 170 21 112 chr9 80969744 80969787 -61301657 + MER58B DNA MER1_type 167 212 -2208 1929 150 10 7 chr9 80969787 80970093 -61301351 - AluJb SINE Alu 0 312 6 653 170 21 112 chr9 80970093 80970237 -61301207 + MER58B DNA MER1_type 212 337 -4 234 0 0 0 chr9 80970479 80970505 -61300939 + (TCCA)n Simple_repeat Simple_repeat 2 27 0 632 144 0 8 chr9 80970508 80970626 -61300818 + (TA)n Simple_repeat Simple_repeat 1 117 0 1820 181 0 0 chr9 80971858 80972167 -61299277 + AluJo SINE Alu 1 309 -3 268 323 60 15 chr9 80972273 80972406 -61299038 + MIR SINE MIR 13 151 -111 23 0 0 0 chr9 80973922 80973945 -61297499 + AT_rich Low_complexity Low_complexity 1 23 0 33 90 0 0 chr9 80975139 80975228 -61296216 + AT_rich Low_complexity Low_complexity 1 89 0 643 284 74 66 chr9 80975353 80975990 -61295454 - L1MC4 LINE L1 -79 7963 7322 8809 223 48 19 chr9 80976221 80981136 -61290308 + L1MA9 LINE L1 1 6172 -995 530 184 58 0 chr9 80981136 80981239 -61290205 + LTR1B LTR ERV1 2 110 -716 5138 144 40 11 chr9 80981239 80982134 -61289310 + L1MA9 LINE L1 6372 7292 -41 269 350 55 25 chr9 80982518 80982681 -61288763 + MIR SINE MIR 82 249 -13 1490 206 10 7 chr9 80982683 80982975 -61288469 - AluJo SINE Alu -13 299 7 1572 281 72 14 chr9 80984535 80985047 -61286397 - MLT1H LTR MaLR 0 549 8 207 0 0 0 chr9 80985147 80985170 -61286274 + (TAG)n Simple_repeat Simple_repeat 1 23 0 1667 188 7 7 chr9 80985170 80985457 -61285987 - AluJb SINE Alu -25 287 1 2227 65 0 0 chr9 80988143 80988405 -61283039 + AluSx SINE Alu 38 299 -13 395 292 174 7 chr9 80989653 80989797 -61281647 + MER5A DNA MER1_type 14 181 -8 316 207 57 64 chr9 80993085 80993225 -61278219 - MER113 DNA MER1_type? -353 168 30 2229 210 19 16 chr9 80993293 80993819 -61277625 - LTR27 LTR ERV1 0 501 3 1861 160 14 22 chr9 80993953 80994321 -61277123 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr9 80994451 80994479 -61276965 + AT_rich Low_complexity Low_complexity 1 28 0 266 306 107 41 chr9 80994877 80994998 -61276446 - L2 LINE L2 -3 3310 3182 584 260 29 17 chr9 80995106 80995279 -61276165 - MER5B DNA MER1_type 0 178 4 262 295 53 0 chr9 80997543 80997638 -61273806 + MER5B DNA MER1_type 4 103 -75 211 286 95 16 chr9 80997610 80997673 -61273771 - MER5B DNA MER1_type -110 68 1 * 304 365 51 15 chr9 80997677 80997814 -61273630 + MIR SINE MIR 13 154 -108 1507 198 50 7 chr9 80998311 80998484 -61272960 - AluJo SINE Alu -7 305 114 180 0 0 0 chr9 80998484 80998504 -61272940 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1507 198 50 7 chr9 80998504 80998613 -61272831 - AluJo SINE Alu -198 114 11 2459 173 8 36 chr9 81000011 81000508 -61270936 + MER31A LTR ERV1 1 483 -2 310 123 46 0 chr9 81001884 81001949 -61269495 + GA-rich Low_complexity Low_complexity 1 68 0 550 171 198 9 chr9 81001949 81002060 -61269384 + AluJb SINE Alu 5 136 -176 747 331 40 9 chr9 81002134 81002481 -61268963 - LTR16A LTR ERVL -89 361 4 202 341 108 8 chr9 81002724 81002853 -61268591 + MIR3 SINE MIR 44 185 -23 678 238 21 57 chr9 81003055 81003248 -61268196 - MER58A DNA MER1_type -9 215 30 356 270 0 20 chr9 81003307 81003407 -61268037 + MER5A DNA MER1_type 9 106 -83 403 272 0 11 chr9 81003484 81003576 -61267868 - MIR SINE MIR -63 145 55 3856 141 2 2 chr9 81003648 81004265 -61267179 + L1PA13 LINE L1 5547 6163 0 2189 244 29 11 chr9 81005403 81005957 -61265487 + MLT1E3 LTR MaLR 1 564 -60 2239 97 3 13 chr9 81006020 81006329 -61265115 - AluSp SINE Alu -7 306 1 302 327 51 6 chr9 81006401 81006557 -61264887 - L1M4 LINE L1 -5327 1215 1053 663 338 84 45 chr9 81007151 81007856 -61263588 - HAL1 LINE L1 -938 1569 838 1601 125 6 111 chr9 81008257 81008601 -61262843 - MER1B DNA MER1_type -31 308 1 25 0 0 0 chr9 81009388 81009413 -61262031 + AT_rich Low_complexity Low_complexity 1 25 0 2434 144 82 18 chr9 81009625 81010075 -61261369 - L1PA16 LINE L1 -3 6163 5685 311 295 109 32 chr9 81010148 81010191 -61261253 - MER5B DNA MER1_type -10 168 130 2440 113 14 14 chr9 81010191 81010555 -61260889 + THE1B LTR MaLR 1 364 0 311 295 109 32 chr9 81010555 81010667 -61260777 - MER5B DNA MER1_type -48 130 1 221 322 0 0 chr9 81011339 81011398 -61260046 + L2 LINE L2 2724 2782 -532 518 277 112 52 chr9 81011417 81011818 -61259626 + LTR33 LTR ERVL 90 514 -7 1589 178 30 13 chr9 81012303 81012601 -61258843 + AluJo SINE Alu 1 303 -9 2118 112 7 3 chr9 81012952 81013257 -61258187 - AluSx SINE Alu -6 306 1 2266 107 3 3 chr9 81013925 81014235 -61257209 + AluSx SINE Alu 1 310 -2 441 333 14 0 chr9 81015638 81015776 -61255668 - MIR SINE MIR -105 157 18 234 285 16 41 chr9 81015786 81015909 -61255535 + (CATATA)n Simple_repeat Simple_repeat 2 121 0 3327 192 42 35 chr9 81016001 81016773 -61254671 + L1MB8 LINE L1 5402 6178 0 206 298 166 7 chr9 81017665 81017816 -61253628 + MIR SINE MIR 82 256 -6 2135 110 27 3 chr9 81017957 81018249 -61253195 + AluSx SINE Alu 1 299 -13 188 314 67 9 chr9 81019253 81019358 -61252086 - MIR SINE MIR -65 197 87 2303 56 20 23 chr9 81020675 81020979 -61250465 - AluY SINE Alu -8 303 1 207 281 79 45 chr9 81021044 81021133 -61250311 - MIR SINE MIR -65 143 52 536 263 39 0 chr9 81022345 81022501 -61248943 - MER5B DNA MER1_type -2 176 15 22 0 0 0 chr9 81023431 81023453 -61247991 + AT_rich Low_complexity Low_complexity 1 22 0 551 280 56 23 chr9 81023502 81023886 -61247558 - L1MC4a LINE L1 -1876 5932 5414 30 0 0 0 chr9 81024255 81024285 -61247159 + AT_rich Low_complexity Low_complexity 1 30 0 659 286 66 58 chr9 81024320 81024442 -61247002 - L1MEd LINE L1 -4918 1201 1082 1618 177 7 17 chr9 81024442 81024736 -61246708 - AluJo SINE Alu -21 291 1 659 286 66 58 chr9 81024736 81025081 -61246363 - L1MEd LINE L1 -5037 1082 730 961 276 110 35 chr9 81025094 81025896 -61245548 - L1MC4a LINE L1 -1751 4395 3495 * 3520 206 42 25 chr9 81025892 81027114 -61244330 - L1MB7 LINE L1 0 6184 4935 1562 229 73 59 chr9 81027129 81027811 -61243633 + L1ME2 LINE L1 5471 6162 -2 181 227 45 0 chr9 81028542 81028586 -61242858 - L2 LINE L2 -1 3312 3267 1610 159 60 36 chr9 81028620 81028984 -61242460 + THE1C LTR MaLR 3 375 0 2321 123 0 0 chr9 81029449 81029759 -61241685 + AluSg SINE Alu 1 310 0 1074 91 0 0 chr9 81029819 81029951 -61241493 + AluSg SINE Alu 1 132 -178 2431 65 0 16 chr9 81029953 81030262 -61241182 + AluY SINE Alu 1 304 -7 506 265 6 18 chr9 81031271 81031437 -61240007 - LTR33 LTR ERVL 0 521 358 657 190 9 114 chr9 81031530 81031741 -61239703 - LTR33 LTR ERVL -330 191 3 816 165 5 99 chr9 81031797 81032009 -61239435 + MER20 DNA MER1_type 16 207 -12 222 343 55 30 chr9 81032122 81032385 -61239059 - L2 LINE L2 -219 3053 2782 727 237 88 26 chr9 81032568 81032796 -61238648 + MIR SINE MIR 14 255 -7 207 0 0 0 chr9 81032819 81032842 -61238602 + (TTG)n Simple_repeat Simple_repeat 2 24 0 910 273 9 0 chr9 81032852 81033072 -61238372 + MER58A DNA MER1_type 2 223 -1 410 286 181 9 chr9 81033843 81034053 -61237391 - MIR SINE MIR -1 261 16 14559 136 27 2 chr9 81034385 81036746 -61234698 - Tigger1 DNA MER2_type 0 2418 1 720 207 37 6 chr9 81036746 81036910 -61234534 - L1M3 LINE L1 -394 6022 5854 682 242 61 65 chr9 81036909 81037086 -61234358 - L1M3 LINE L1 -2283 4099 3922 * 1807 193 0 22 chr9 81037086 81037402 -61234042 - AluJb SINE Alu -3 309 1 682 242 61 65 chr9 81037402 81037517 -61233927 - L1M3 LINE L1 -2460 3922 3808 * 2088 222 20 27 chr9 81037514 81037777 -61233667 - L1M3 LINE L1 -4607 1777 1514 2328 143 14 3 chr9 81037777 81038148 -61233296 - THE1C LTR MaLR 0 375 1 2088 222 20 27 chr9 81038148 81038479 -61232965 - L1M3 LINE L1 -4870 1514 1187 462 261 14 20 chr9 81038479 81038652 -61232792 - L1M3 LINE L1 -5035 1271 779 2503 229 61 16 chr9 81040450 81041091 -61230353 + L1M1 LINE L1 15 684 -6881 3954 152 5 35 chr9 81041103 81041853 -61229591 - L1P LINE L1 -5090 1056 329 32110 43 2 2 chr9 81041856 81046846 -61224598 + L1PA4 LINE L1 1164 6155 0 717 179 81 6 chr9 81046891 81047064 -61224380 + MLT1A1 LTR MaLR 176 361 -4 515 175 8 0 chr9 81047065 81047185 -61224259 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 311 306 0 0 chr9 81047268 81047353 -61224091 + L1MC4 LINE L1 6619 6703 -1339 277 256 23 0 chr9 81047363 81047449 -61223995 - L1MC4 LINE L1 -1341 6701 6614 312 127 0 0 chr9 81047449 81047504 -61223940 + (TA)n Simple_repeat Simple_repeat 1 55 0 228 267 0 11 chr9 81047506 81047596 -61223848 - L1MC4 LINE L1 -1340 6702 6614 233 182 0 15 chr9 81047622 81047688 -61223756 + (TA)n Simple_repeat Simple_repeat 2 66 0 326 264 35 0 chr9 81047701 81047788 -61223656 + L1MC4 LINE L1 6614 6703 -1339 414 0 0 0 chr9 81047809 81047855 -61223589 + (CA)n Simple_repeat Simple_repeat 2 47 0 2544 59 3 0 chr9 81048781 81049087 -61222357 - AluY SINE Alu -4 307 1 481 372 39 4 chr9 81049087 81049321 -61222123 + MIR SINE MIR 21 262 0 2380 129 8 6 chr9 81049535 81049898 -61221546 + THE1B LTR MaLR 1 364 0 188 265 122 31 chr9 81050352 81050450 -61220994 + MER5A DNA MER1_type 61 167 -22 * 204 288 38 25 chr9 81050378 81050458 -61220986 - MER5A DNA MER1_type -83 106 26 1316 207 24 14 chr9 81051193 81051488 -61219956 + AluJb SINE Alu 1 298 -14 530 322 28 19 chr9 81051785 81051996 -61219448 - MIR SINE MIR -10 252 40 778 222 6 0 chr9 81052576 81052747 -61218697 - MLT1D LTR MaLR -6 499 328 228 218 0 0 chr9 81053633 81053688 -61217756 - L1MC4 LINE L1 -2399 5409 5355 501 316 106 29 chr9 81053995 81054543 -61216901 + L1MC4a LINE L1 5313 5902 -1906 1774 154 0 8 chr9 81054789 81055056 -61216388 + AluSx SINE Alu 39 303 -9 1380 186 18 28 chr9 81055103 81055388 -61216056 + AluJb SINE Alu 2 283 -29 274 276 26 0 chr9 81055459 81055575 -61215869 + (TA)n Simple_repeat Simple_repeat 1 119 0 255 146 0 0 chr9 81055797 81055838 -61215606 + AluJo SINE Alu 89 129 -173 363 221 0 0 chr9 81055838 81055924 -61215520 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 809 161 8 0 chr9 81055929 81056053 -61215391 + AluJo SINE Alu 134 258 -54 726 243 27 62 chr9 81057652 81057743 -61213701 - MER46C DNA MER2_type -13 325 232 210 118 0 0 chr9 81057743 81057777 -61213667 + (CA)n Simple_repeat Simple_repeat 1 34 0 726 243 27 62 chr9 81057777 81058022 -61213422 - MER46C DNA MER2_type -106 232 1 2222 95 3 13 chr9 81058262 81058567 -61212877 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr9 81058997 81059018 -61212426 + AT_rich Low_complexity Low_complexity 1 21 0 316 320 56 24 chr9 81059612 81059737 -61211707 + MIR3 SINE MIR 64 192 -16 3610 45 5 2 chr9 81061804 81062251 -61209193 + LTR7 LTR ERV1 1 448 -2 19029 85 12 42 chr9 81062253 81065339 -61206105 + HERVH LTR ERV1 1 2995 -4718 869 140 7 0 chr9 81065318 81065468 -61205976 + HERVH LTR ERV1 3140 3290 -4423 * 3243 113 0 6 chr9 81065458 81065963 -61205481 + HERVH LTR ERV1 3492 3993 -3720 4142 141 1 1 chr9 81065965 81066627 -61204817 + HERVH LTR ERV1 4488 5149 -2564 1307 139 19 0 chr9 81066628 81066844 -61204600 + HERVH LTR ERV1 5600 5819 -1894 2388 74 48 13 chr9 81066844 81067221 -61204223 + HERVH LTR ERV1 7324 7713 0 3380 48 30 5 chr9 81067221 81067658 -61203786 + LTR7 LTR ERV1 1 448 -2 314 303 32 43 chr9 81067899 81068087 -61203357 + L2 LINE L2 2090 2275 -1039 481 314 184 14 chr9 81068093 81068204 -61203240 - L2 LINE L2 -720 2594 2503 1637 180 0 63 chr9 81068204 81068520 -61202924 + AluJb SINE Alu 1 296 -16 481 314 184 14 chr9 81068520 81068777 -61202667 - L2 LINE L2 -811 2503 2163 413 283 187 0 chr9 81070372 81070591 -61200853 + MIR SINE MIR 3 262 0 182 305 182 59 chr9 81071650 81071853 -61199591 - L2 LINE L2 0 3272 3045 235 358 17 52 chr9 81072118 81072350 -61199094 - MIR SINE MIR -37 225 2 238 248 33 48 chr9 81073244 81073429 -61198015 + L1P5 LINE L1 5265 5450 -701 8209 196 13 15 chr9 81073471 81074104 -61197340 - L1PA16 LINE L1 -14 6152 5519 2117 125 143 8 chr9 81074104 81074481 -61196963 + MSTA LTR MaLR 1 428 0 8209 196 13 15 chr9 81074481 81077031 -61194413 - L1PA16 LINE L1 -647 5519 2981 249 314 47 24 chr9 81077079 81077248 -61194196 + L1ME LINE L1 5512 5684 -437 429 284 25 31 chr9 81077309 81077471 -61193973 - MIR SINE MIR -81 181 21 1016 225 26 69 chr9 81078013 81078360 -61193084 + MLT1D LTR MaLR 1 332 -173 5449 174 25 13 chr9 81078372 81079416 -61192028 + L1MC1 LINE L1 5260 6315 -18 256 77 39 0 chr9 81079419 81079471 -61191973 + (TA)n Simple_repeat Simple_repeat 1 54 0 225 0 0 0 chr9 81079470 81079495 -61191949 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 257 346 51 60 chr9 81079750 81079967 -61191477 + L2 LINE L2 2763 2977 -337 473 311 82 10 chr9 81080245 81080441 -61191003 + MIR SINE MIR 2 211 -51 428 327 168 7 chr9 81080473 81080776 -61190668 - L2 LINE L2 -949 2365 2014 22 0 0 0 chr9 81081090 81081112 -61190332 + AT_rich Low_complexity Low_complexity 1 22 0 209 208 21 21 chr9 81083735 81083783 -61187661 + L2 LINE L2 3265 3312 -1 186 43 0 0 chr9 81084010 81084033 -61187411 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2132 130 0 7 chr9 81085530 81085831 -61185613 - AluSx SINE Alu -13 299 1 415 248 62 9 chr9 81086269 81086382 -61185062 + MLT1H LTR MaLR 106 224 -325 849 150 0 21 chr9 81086386 81086526 -61184918 - FLAM_C SINE Alu -6 137 1 340 65 0 0 chr9 81086735 81086781 -61184663 + MADE1 DNA Mariner 35 80 0 2047 117 7 0 chr9 81086971 81087276 -61184168 - AluSx SINE Alu 0 307 1 204 320 32 72 chr9 81087536 81087661 -61183783 + MIR SINE MIR 23 142 -66 744 348 23 8 chr9 81088002 81088258 -61183186 + MER115 DNA AcHobo 11 270 -423 3777 231 34 60 chr9 81088377 81089442 -61182002 + MER45B DNA AcHobo 5 1040 0 420 256 74 23 chr9 81089510 81089686 -61181758 + MER115 DNA AcHobo 509 693 0 544 219 39 8 chr9 81090397 81090525 -61180919 + MER94 DNA DNA 3 134 0 415 385 41 0 chr9 81090714 81090883 -61180561 - MER91A DNA MER1_type -20 176 1 403 315 77 58 chr9 81091194 81091454 -61179990 + HAL1 LINE L1 1405 1669 -838 216 0 0 0 chr9 81091497 81091521 -61179923 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 291 286 108 5 chr9 81091872 81092057 -61179387 + L1MDa LINE L1 2445 2648 -3892 30 0 0 0 chr9 81092074 81092104 -61179340 + AT_rich Low_complexity Low_complexity 1 30 0 7218 148 65 5 chr9 81092132 81093376 -61178068 - Tigger1 DNA MER2_type -1 2417 1099 1654 198 62 0 chr9 81093380 81093718 -61177726 - MSTB1 LTR MaLR 0 432 74 6509 137 19 3 chr9 81093747 81094774 -61176670 - Tigger1 DNA MER2_type -1318 1100 58 638 293 116 79 chr9 81094869 81094984 -61176460 + L1MDa LINE L1 2811 2920 -3620 180 111 0 0 chr9 81094984 81095011 -61176433 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1359 198 60 8 chr9 81095014 81095282 -61176162 - AluJo SINE Alu -30 282 1 638 293 116 79 chr9 81095282 81096284 -61175160 + L1MDa LINE L1 2921 3885 -2655 288 77 0 0 chr9 81096284 81096323 -61175121 + (CA)n Simple_repeat Simple_repeat 2 40 0 638 293 116 79 chr9 81096323 81096490 -61174954 + L1MDa LINE L1 3885 4044 -2496 2217 127 0 0 chr9 81096490 81096798 -61174646 - AluSc SINE Alu -1 308 1 638 293 116 79 chr9 81096798 81097643 -61173801 + L1MDa LINE L1 4044 5024 -1516 22 0 0 0 chr9 81097680 81097702 -61173742 + AT_rich Low_complexity Low_complexity 1 22 0 722 235 49 12 chr9 81097751 81097994 -61173450 - Charlie5 DNA MER1_type -29 2583 2332 462 339 44 32 chr9 81098083 81098425 -61173019 + L1MDa LINE L1 5277 5622 -918 222 317 67 79 chr9 81099689 81099853 -61171591 - MER5B DNA MER1_type -16 162 1 279 315 105 25 chr9 81100049 81100211 -61171233 - MIR3 SINE MIR -18 190 16 241 298 193 17 chr9 81100249 81100430 -61171014 + MIR SINE MIR 49 261 -1 22 0 0 0 chr9 81100872 81100894 -61170550 + AT_rich Low_complexity Low_complexity 1 22 0 1053 186 0 11 chr9 81101043 81101220 -61170224 - AluJo SINE Alu 0 312 138 1663 158 7 18 chr9 81101220 81101499 -61169945 - MSTA LTR MaLR 0 428 153 656 169 0 17 chr9 81101502 81101620 -61169824 + FRAM SINE Alu 55 170 -6 704 145 57 8 chr9 81101696 81101820 -61169624 - MSTA LTR MaLR -296 130 1 9182 172 12 4 chr9 81101821 81103457 -61167987 - MSTB-int LTR MaLR -1 1650 1 2054 190 59 10 chr9 81103457 81103863 -61167581 - MSTB LTR MaLR 0 426 1 522 242 106 30 chr9 81103863 81103995 -61167449 - AluJo SINE Alu -170 142 1 1291 187 23 104 chr9 81104068 81104463 -61166981 + L1MB5 LINE L1 5804 6166 -8 1030 180 6 16 chr9 81105469 81105652 -61165792 + AluJo SINE Alu 112 292 -20 205 229 14 14 chr9 81105672 81105742 -61165702 + (TA)n Simple_repeat Simple_repeat 1 70 0 2166 186 48 131 chr9 81105845 81106599 -61164845 + LTR8A LTR ERV1 37 727 0 415 263 17 17 chr9 81106719 81106898 -61164546 + (TA)n Simple_repeat Simple_repeat 1 179 0 339 238 67 49 chr9 81106949 81107113 -61164331 - L1ME4a LINE L1 -259 5862 5696 490 202 20 0 chr9 81107307 81107406 -61164038 - MER58 DNA MER1_type -2 2418 2318 366 244 58 0 chr9 81107427 81107513 -61163931 - MER58 DNA MER1_type -124 91 1 956 302 119 15 chr9 81107539 81108066 -61163378 + L1MEd LINE L1 260 841 -5278 280 111 37 37 chr9 81108077 81108185 -61163259 + (TA)n Simple_repeat Simple_repeat 1 108 0 237 176 54 0 chr9 81108197 81108271 -61163173 + (TA)n Simple_repeat Simple_repeat 1 78 0 * 242 201 14 69 chr9 81108244 81108388 -61163056 + (TATAA)n Simple_repeat Simple_repeat 4 139 0 * 257 207 23 35 chr9 81108352 81108439 -61163005 + (TA)n Simple_repeat Simple_repeat 1 86 0 304 292 23 46 chr9 81108448 81108578 -61162866 + L1MEd LINE L1 872 998 -5121 485 122 0 0 chr9 81108935 81109009 -61162435 + AluY SINE Alu 1 74 -237 1456 126 0 9 chr9 81109009 81109232 -61162212 - pTR5 LTR ERV1 -2046 392 172 359 204 31 20 chr9 81109235 81109333 -61162111 - LTR30 LTR ERV1 -80 642 544 4174 130 78 39 chr9 81109337 81110369 -61161075 - pTR5 LTR ERV1 -417 2021 743 1550 77 67 5 chr9 81110369 81110578 -61160866 + AluY SINE Alu 71 292 -19 707 175 0 35 chr9 81110604 81110747 -61160697 + FLAM_C SINE Alu 6 143 0 311 167 0 0 chr9 81110765 81110825 -61160619 + Alu SINE Alu 243 302 0 518 307 101 20 chr9 81110837 81111440 -61160004 + L1 LINE L1 3081 3732 -2414 392 351 37 37 chr9 81111592 81111834 -61159610 - MIR SINE MIR -1 261 20 2270 111 0 0 chr9 81111870 81112176 -61159268 + AluSg SINE Alu 1 306 -4 1405 216 51 7 chr9 81112404 81112700 -61158744 - AluJo SINE Alu -3 309 1 21 36 0 0 chr9 81112886 81112914 -61158530 + AT_rich Low_complexity Low_complexity 1 28 0 306 285 76 29 chr9 81112923 81113095 -61158349 + L1 LINE L1 3832 4011 -2135 2070 154 95 3 chr9 81113121 81113511 -61157933 - MSTA LTR MaLR -2 426 1 1718 185 7 3 chr9 81113599 81113901 -61157543 + AluJb SINE Alu 5 307 -5 245 274 0 0 chr9 81113975 81114037 -61157407 - L1ME LINE L1 -322 5799 5738 743 219 41 30 chr9 81114114 81114283 -61157161 - AluJ SINE Alu -7 305 135 285 29 0 0 chr9 81114286 81114320 -61157124 + (TG)n Simple_repeat Simple_repeat 1 34 0 225 94 0 0 chr9 81114321 81114353 -61157091 + (TA)n Simple_repeat Simple_repeat 2 33 0 227 250 23 0 chr9 81114425 81114513 -61156931 + L1MC4 LINE L1 6614 6703 -1339 741 188 0 8 chr9 81114540 81114668 -61156776 - AluJ SINE Alu -175 127 1 195 293 274 9 chr9 81115856 81115962 -61155482 + MIR SINE MIR 53 186 -76 1773 179 56 23 chr9 81116094 81116530 -61154914 + MLT1B LTR MaLR 1 390 0 23 33 0 0 chr9 81116790 81116820 -61154624 + AT_rich Low_complexity Low_complexity 1 30 0 491 292 7 16 chr9 81117301 81117454 -61153990 + MIR SINE MIR 6 154 -65 24 32 0 0 chr9 81117971 81118002 -61153442 + AT_rich Low_complexity Low_complexity 1 31 0 369 206 47 28 chr9 81118770 81118877 -61152567 + MLT1G LTR MaLR 454 562 -28 189 74 0 0 chr9 81119226 81119253 -61152191 + (GA)n Simple_repeat Simple_repeat 2 28 0 2163 137 30 30 chr9 81120003 81120367 -61151077 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 81122964 81122987 -61148457 + AT_rich Low_complexity Low_complexity 1 23 0 2738 16 0 19 chr9 81123399 81123715 -61147729 - AluY SINE Alu -1 310 1 471 296 74 11 chr9 81124135 81124311 -61147133 + L2 LINE L2 2952 3138 -175 297 261 0 0 chr9 81124322 81124387 -61147057 + L2 LINE L2 3249 3313 0 1928 155 0 0 chr9 81125024 81125321 -61146123 - AluSx SINE Alu -15 297 1 224 294 44 0 chr9 81125387 81125455 -61145989 + L2 LINE L2 3181 3251 -21 243 272 18 26 chr9 81125715 81125829 -61145615 - L1MEc LINE L1 -4145 2251 2139 951 328 84 27 chr9 81126015 81126683 -61144761 - L1MEc LINE L1 -5580 816 111 2358 60 3 3 chr9 81126700 81126998 -61144446 + AluY SINE Alu 1 298 -13 835 287 65 52 chr9 81127030 81127705 -61143739 - L1ME LINE L1 -3037 3369 2678 1507 186 123 38 chr9 81127705 81128070 -61143374 + MSTD LTR MaLR 1 396 0 835 287 65 52 chr9 81128070 81128265 -61143179 - L1ME LINE L1 -3728 2678 2487 23 33 0 0 chr9 81128484 81128514 -61142930 + AT_rich Low_complexity Low_complexity 1 30 0 330 287 80 41 chr9 81128960 81129254 -61142190 - L1ME LINE L1 -4854 1552 1250 488 264 94 44 chr9 81129347 81129674 -61141770 - L1ME LINE L1 -5147 1262 927 348 206 92 15 chr9 81129712 81129843 -61141601 - MER69 DNA AcHobo -124 2402 2262 240 208 42 0 chr9 81129897 81129969 -61141475 + (TA)n Simple_repeat Simple_repeat 2 76 0 236 224 130 31 chr9 81129971 81130132 -61141312 - MER69 DNA AcHobo -349 2177 2001 207 0 0 0 chr9 81130191 81130214 -61141230 + (CA)n Simple_repeat Simple_repeat 2 24 0 1885 287 79 15 chr9 81130225 81130842 -61140602 - MER69 DNA AcHobo -1866 660 4 657 303 21 17 chr9 81131054 81131292 -61140152 - MIR SINE MIR -10 252 14 22 56 0 0 chr9 81132387 81132423 -61139021 + AT_rich Low_complexity Low_complexity 1 36 0 349 79 16 16 chr9 81132782 81132845 -61138599 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 749 241 17 6 chr9 81133497 81133671 -61137773 + MER5B DNA MER1_type 2 177 -1 1609 305 58 26 chr9 81133794 81134410 -61137034 + L1MA6 LINE L1 1 636 -6153 3331 262 36 57 chr9 81134694 81135739 -61135705 + L1MA6 LINE L1 1226 1939 -4849 593 139 0 0 chr9 81135739 81135825 -61135619 + AluJb SINE Alu 208 293 -19 3331 262 36 57 chr9 81135825 81136895 -61134549 + L1MA6 LINE L1 1939 3029 -3759 7282 197 74 13 chr9 81136939 81138519 -61132925 + MER52A LTR ERV1 1 1749 -6 8071 201 54 10 chr9 81138520 81140419 -61131025 + L1MA6 LINE L1 3038 5020 -1768 4354 171 44 55 chr9 81140418 81141475 -61129969 + L1MA6 LINE L1 5564 6598 -344 * 219 36 0 0 chr9 81141475 81141503 -61129941 + (TA)n Simple_repeat Simple_repeat 2 29 0 4354 171 44 55 chr9 81141503 81141840 -61129604 + L1MA6 LINE L1 6598 6937 -5 826 228 18 0 chr9 81141993 81142164 -61129280 + MER5A DNA MER1_type 3 176 -13 790 182 65 53 chr9 81142562 81142732 -61128712 - MER5B DNA MER1_type -6 172 1 3270 149 21 11 chr9 81142931 81143453 -61127991 + MER1A DNA MER1_type 1 527 0 651 251 121 21 chr9 81143778 81143969 -61127475 - L1MD2 LINE L1 -3 7992 6158 1501 237 46 48 chr9 81144232 81144730 -61126714 - MLT1D LTR MaLR -8 497 1 211 293 17 0 chr9 81144737 81144795 -61126649 + MIR SINE MIR 82 140 -122 2521 50 0 3 chr9 81144951 81145251 -61126193 + AluY SINE Alu 1 299 -12 379 224 60 14 chr9 81145532 81145634 -61125810 - MER5B DNA MER1_type -2 176 71 267 267 50 111 chr9 81146157 81146233 -61125211 - MIR3 SINE MIR -13 195 116 1602 209 50 30 chr9 81146233 81146635 -61124809 + MLT2D LTR ERVL 5 414 0 267 267 50 111 chr9 81146635 81146738 -61124706 - MIR3 SINE MIR -92 116 27 1032 214 33 0 chr9 81146758 81146973 -61124471 + MER58A DNA MER1_type 3 224 0 21 36 0 0 chr9 81147605 81147633 -61123811 + AT_rich Low_complexity Low_complexity 1 28 0 628 289 39 35 chr9 81148110 81148366 -61123078 + MIR SINE MIR 5 261 -1 1552 258 87 22 chr9 81148535 81148985 -61122459 - MLT1G LTR MaLR 0 590 112 821 231 89 10 chr9 81148986 81149189 -61122255 - MER58A DNA MER1_type 0 224 6 328 336 9 0 chr9 81149191 81149301 -61122143 - MLT1G LTR MaLR -470 120 10 236 169 68 0 chr9 81149522 81149581 -61121863 + T-rich Low_complexity Low_complexity 5 67 0 825 113 0 23 chr9 81149583 81149716 -61121728 - L1PA16 LINE L1 -3 6866 6737 299 85 21 0 chr9 81149717 81149764 -61121680 + (TA)n Simple_repeat Simple_repeat 2 49 0 254 109 0 0 chr9 81149764 81149810 -61121634 + LTR66 LTR ERVL 394 439 -171 321 169 0 0 chr9 81149810 81149869 -61121575 + (TA)n Simple_repeat Simple_repeat 2 60 0 1881 116 48 0 chr9 81149869 81150137 -61121307 - AluSc SINE Alu -23 286 6 14265 184 24 85 chr9 81150141 81154819 -61116625 - L1PA16 LINE L1 -126 6743 1779 1742 145 103 0 chr9 81154819 81155081 -61116363 - AluSx SINE Alu -17 295 7 14265 184 24 85 chr9 81155081 81156870 -61114574 - L1PA16 LINE L1 -5090 1779 714 342 0 0 0 chr9 81156870 81156908 -61114536 + (CA)n Simple_repeat Simple_repeat 2 39 0 14265 184 24 85 chr9 81156908 81157574 -61113870 - L1PA16 LINE L1 -6155 714 9 203 383 0 21 chr9 81157809 81157903 -61113541 - MIR SINE MIR -98 110 19 244 328 40 56 chr9 81159167 81159292 -61112152 + L2 LINE L2 3150 3272 0 209 357 110 13 chr9 81160958 81161112 -61110332 - L2 LINE L2 -2814 500 332 2161 118 3 0 chr9 81161160 81161457 -61109987 + AluSg SINE Alu 10 307 -3 364 215 7 126 chr9 81161693 81161828 -61109616 - L2 LINE L2 0 3313 3195 3539 183 40 16 chr9 81161937 81163171 -61108273 + L1P3 LINE L1 1 1141 -4734 8675 89 21 1 chr9 81163178 81165165 -61106279 + L1PA8 LINE L1 4148 6158 -14 1002 270 6 22 chr9 81165664 81165982 -61105462 - L1ME2 LINE L1 -9 6155 5843 847 192 65 103 chr9 81166438 81166820 -61104624 - MLT1A1 LTR MaLR -2 363 1 198 143 0 0 chr9 81167024 81167059 -61104385 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 243 303 50 34 chr9 81168042 81168161 -61103283 - MIR3 SINE MIR -2 206 86 3341 200 24 53 chr9 81168812 81169138 -61102306 - L1MB3 LINE L1 -174 6245 5911 1743 135 88 0 chr9 81169138 81169412 -61102032 + AluSq SINE Alu 1 298 -15 3341 200 24 53 chr9 81169412 81170109 -61101335 - L1MB3 LINE L1 -508 5911 5277 2194 108 6 10 chr9 81170109 81170423 -61101021 - AluSp SINE Alu 0 313 1 3341 200 24 53 chr9 81170423 81170902 -61100542 - L1MB3 LINE L1 -1142 5277 4786 1609 180 26 15 chr9 81170904 81171365 -61100079 - L1MB3 LINE L1 -3782 2600 2133 34 24 0 0 chr9 81171369 81171410 -61100034 + AT_rich Low_complexity Low_complexity 1 41 0 3198 205 60 53 chr9 81171416 81171731 -61099713 - L1MB3 LINE L1 -5431 953 642 2374 78 0 3 chr9 81171731 81172027 -61099417 + AluY SINE Alu 1 295 -16 3198 205 60 53 chr9 81172027 81172544 -61098900 - L1MB3 LINE L1 -5742 642 115 430 265 0 10 chr9 81172546 81172644 -61098800 - Tigger7 DNA MER2_type 0 2487 2391 * 1197 204 113 0 chr9 81172642 81172882 -61098562 - Tigger7 DNA MER2_type -466 267 1 610 182 27 0 chr9 81172882 81172992 -61098452 - L1MB3 LINE L1 -6270 114 2 380 243 50 43 chr9 81173246 81173386 -61098058 - L3 LINE CR1 -797 780 640 22 35 0 0 chr9 81173434 81173463 -61097981 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 81174035 81174059 -61097385 + AT_rich Low_complexity Low_complexity 1 24 0 661 218 103 0 chr9 81174723 81174897 -61096547 - MER3 DNA MER1_type -17 192 1 311 242 0 0 chr9 81174913 81174975 -61096469 - MIR SINE MIR -68 140 79 2299 21 3 0 chr9 81175090 81175419 -61096025 - L1P1 LINE L1 -704 5451 5122 * 6294 10 0 0 chr9 81175418 81176126 -61095318 + L1HS LINE L1 5448 6155 0 2246 178 43 5 chr9 81177550 81177966 -61093478 - MSTB1 LTR MaLR 0 432 1 1405 234 80 48 chr9 81178954 81179415 -61092029 + MLT1D LTR MaLR 22 497 -8 613 212 84 34 chr9 81179425 81179604 -61091840 - MLT1F1 LTR MaLR -1 566 379 2081 275 81 19 chr9 81180083 81180889 -61090555 - L1ME3A LINE L1 -11 6159 5304 32 26 0 0 chr9 81180893 81180932 -61090512 + AT_rich Low_complexity Low_complexity 1 39 0 219 88 0 0 chr9 81180939 81180973 -61090471 + (GA)n Simple_repeat Simple_repeat 2 35 0 1771 276 80 44 chr9 81181023 81182250 -61089194 - L1ME3A LINE L1 -984 5162 3892 * 11468 220 54 26 chr9 81182249 81188367 -61083077 + L1MA9 LINE L1 970 6862 -36 2387 83 3 0 chr9 81188970 81189272 -61082172 - AluSp SINE Alu -10 303 1 1372 146 0 78 chr9 81191218 81191486 -61079958 - AluJo SINE Alu -63 249 3 816 289 131 12 chr9 81191510 81191927 -61079517 + LTR33A LTR ERVL 76 515 -8 2450 114 3 11 chr9 81192289 81192656 -61078788 - L1PA16 LINE L1 -9 6157 5794 827 171 7 7 chr9 81192657 81192803 -61078641 + L1PA16 LINE L1 5627 5772 -394 1552 200 89 20 chr9 81193464 81193869 -61077575 + MER63B DNA MER1_type 1 433 -3 1570 262 11 68 chr9 81194902 81195447 -61075997 + MLT2B1 LTR ERVL 1 514 -6 2330 135 9 11 chr9 81195727 81196103 -61075341 - THE1B LTR MaLR 0 364 4 274 320 87 10 chr9 81196897 81197000 -61074444 - L2 LINE L2 -5 3267 3157 326 132 0 0 chr9 81197257 81197310 -61074134 - U2 snRNA snRNA -129 59 7 4285 154 24 39 chr9 81197312 81198721 -61072723 + L1MA4 LINE L1 4652 6052 -248 962 206 53 0 chr9 81198845 81199073 -61072371 + L1MA4 LINE L1 6061 6300 0 201 121 0 0 chr9 81199552 81199585 -61071859 + (TA)n Simple_repeat Simple_repeat 1 33 0 2248 54 11 0 chr9 81201148 81201445 -61069999 - AluY SINE Alu 0 300 1 21 89 0 0 chr9 81201618 81201674 -61069770 + AT_rich Low_complexity Low_complexity 1 56 0 320 133 17 0 chr9 81201877 81201937 -61069507 + (TG)n Simple_repeat Simple_repeat 2 62 0 393 206 0 0 chr9 81202097 81202189 -61069255 + CT-rich Low_complexity Low_complexity 4 95 0 27 0 0 0 chr9 81203802 81203829 -61067615 + AT_rich Low_complexity Low_complexity 1 27 0 2059 148 3 0 chr9 81204239 81204536 -61066908 + AluSx SINE Alu 1 298 -14 233 347 41 16 chr9 81205008 81205129 -61066315 - L2 LINE L2 0 3313 3190 339 239 0 0 chr9 81205196 81205263 -61066181 + MER5A DNA MER1_type 4 70 -119 900 254 74 72 chr9 81205268 81205780 -61065664 + HAL1 LINE L1 1263 1775 -732 1110 128 6 9 chr9 81206005 81207529 -61063915 - HSATII Satellite Satellite 0 1519 1 1077 113 11 9 chr9 81207555 81208188 -61063256 - HSATII Satellite Satellite 0 634 1 1001 115 16 20 chr9 81208298 81209525 -61061919 + HSATII Satellite Satellite 1 1223 -1 995 133 7 17 chr9 81209546 81210132 -61061312 + HSATII Satellite Satellite 1 580 -14 782 149 6 0 chr9 81210162 81210464 -61060980 + HSATII Satellite Satellite 1 303 -13 1019 129 10 8 chr9 81210564 81211994 -61059450 + HSATII Satellite Satellite 1 1432 -32 968 119 3 19 chr9 81212010 81212332 -61059112 + HSATII Satellite Satellite 1 316 0 1098 97 3 0 chr9 81212359 81212658 -61058786 + HSATII Satellite Satellite 1 300 -111 717 216 56 6 chr9 81212759 81212921 -61058523 + L1MC4 LINE L1 6835 7004 -1038 2796 103 17 7 chr9 81212932 81213351 -61058093 + L1PA13 LINE L1 5736 6158 -5 2057 101 16 20 chr9 81213360 81213666 -61057778 + AluSg SINE Alu 1 305 -5 408 347 24 40 chr9 81213976 81214224 -61057220 - L1MCa LINE L1 -2229 4197 3954 711 272 60 32 chr9 81214381 81214476 -61056968 - MER58A DNA MER1_type -2197 223 132 917 184 141 95 chr9 81214476 81214744 -61056700 - MLT1A1 LTR MaLR -2 363 74 2185 108 3 0 chr9 81214744 81215041 -61056403 - AluSg SINE Alu -11 299 2 917 184 141 95 chr9 81215041 81215119 -61056325 - MLT1A1 LTR MaLR -291 74 1 711 272 60 32 chr9 81215119 81215240 -61056204 - MER58A DNA MER1_type -2288 132 1 5983 96 30 0 chr9 81217402 81218817 -61052627 + L1PA10 LINE L1 4724 6168 0 580 276 114 58 chr9 81218826 81219203 -61052241 - MER110-int LTR ERV1 -401 4246 3849 960 267 61 90 chr9 81219358 81220048 -61051396 - MER110-int LTR ERV1 -892 3755 3086 419 186 14 0 chr9 81220066 81220136 -61051308 + MLT1D LTR MaLR 8 78 -427 1993 286 33 7 chr9 81220194 81220959 -61050485 - L1MEc LINE L1 -2335 4622 3838 10902 110 14 3 chr9 81220980 81222561 -61048883 - L1P3 LINE L1 -4858 1603 6 584 286 98 69 chr9 81222562 81223009 -61048435 - L1MEc LINE L1 -4200 2938 2479 4103 271 33 60 chr9 81223157 81224195 -61047249 - L1MEc LINE L1 -5349 1510 521 2269 105 0 13 chr9 81224195 81224509 -61046935 + AluSg SINE Alu 1 310 0 4103 271 33 60 chr9 81224509 81224919 -61046525 - L1MEc LINE L1 -6338 521 101 23 0 0 0 chr9 81225778 81225801 -61045643 + AT_rich Low_complexity Low_complexity 1 23 0 1247 105 0 0 chr9 81225806 81225978 -61045466 + AluY SINE Alu 139 310 -1 491 272 58 0 chr9 81226377 81226550 -61044894 - L1MCa LINE L1 -2555 3871 3689 * 8232 210 75 79 chr9 81226545 81229113 -61042331 - L1MCa LINE L1 -3950 2476 19 848 227 76 4 chr9 81229110 81229348 -61042096 + Tigger6 DNA MER2_type 1317 1571 -26 * 2139 130 0 0 chr9 81229892 81230192 -61041252 - AluSx SINE Alu -12 300 1 305 346 68 21 chr9 81231020 81231254 -61040190 - L1MEc LINE L1 -5214 1182 938 1874 154 29 129 chr9 81231256 81231471 -61039973 - L1MB8 LINE L1 -5 6173 5938 2390 78 3 0 chr9 81231471 81231779 -61039665 - AluY SINE Alu 0 311 3 1874 154 29 129 chr9 81231779 81232114 -61039330 - L1MB8 LINE L1 -240 5938 5678 4570 176 36 22 chr9 81232140 81233114 -61038330 - L1MC2 LINE L1 -8 6336 5349 7627 137 22 3 chr9 81235027 81236111 -61035333 - L1P LINE L1 -1540 4606 3493 195 69 0 0 chr9 81236111 81236140 -61035304 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 7627 137 22 3 chr9 81236140 81236324 -61035120 - L1P LINE L1 -2653 3493 3314 1566 243 97 26 chr9 81236741 81237197 -61034247 + MER110 LTR ERV1 4 491 0 360 353 14 37 chr9 81237651 81237869 -61033575 - L2 LINE L2 -4 3309 3097 566 309 0 17 chr9 81238805 81238983 -61032461 + L1MC/D LINE L1 5453 5627 -2181 7339 38 3 0 chr9 81239154 81240132 -61031312 + L1PA4 LINE L1 5175 6155 0 227 332 98 16 chr9 81240448 81240674 -61030770 - MIR SINE MIR -6 256 19 2113 144 0 3 chr9 81241216 81241528 -61029916 - AluSx SINE Alu -1 311 1 446 329 57 46 chr9 81241737 81242126 -61029318 - L2 LINE L2 0 3313 2921 299 316 44 32 chr9 81242260 81242418 -61029026 - L2 LINE L2 -586 2728 2569 910 302 31 34 chr9 81242509 81242896 -61028548 - MLT1I LTR MaLR -2 407 22 264 336 19 47 chr9 81243355 81243462 -61027982 + L2 LINE L2 3152 3255 -17 22 56 0 0 chr9 81243570 81243606 -61027838 + AT_rich Low_complexity Low_complexity 1 36 0 322 308 58 0 chr9 81243609 81243729 -61027715 - MIR SINE MIR -18 244 118 37 76 0 0 chr9 81243887 81243966 -61027478 + AT_rich Low_complexity Low_complexity 1 79 0 2377 75 0 3 chr9 81244452 81244747 -61026697 + AluY SINE Alu 1 294 -17 1883 246 55 35 chr9 81244752 81245264 -61026180 - L1M4c LINE L1 -5748 636 115 430 265 0 10 chr9 81245266 81245364 -61026080 - Tigger7 DNA MER2_type 0 2587 2491 * 1197 204 113 0 chr9 81245362 81245602 -61025842 - Tigger7 DNA MER2_type -2220 267 1 610 182 27 0 chr9 81245602 81245712 -61025732 - L1M4c LINE L1 -6270 114 2 380 243 50 43 chr9 81245966 81246106 -61025338 - L3 LINE CR1 -797 780 640 22 35 0 0 chr9 81246154 81246183 -61025261 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 81246755 81246779 -61024665 + AT_rich Low_complexity Low_complexity 1 24 0 661 218 103 0 chr9 81247443 81247617 -61023827 - MER3 DNA MER1_type -17 192 1 311 242 0 0 chr9 81247633 81247695 -61023749 - MIR SINE MIR -68 140 79 2299 21 3 0 chr9 81247810 81248139 -61023305 - L1P1 LINE L1 -704 5451 5122 * 4905 16 0 0 chr9 81248138 81248695 -61022749 + L1HS LINE L1 5448 6004 -151 204 342 13 0 chr9 81248710 81248786 -61022658 - L2 LINE L2 -8 3305 3229 353 239 0 0 chr9 81248888 81248955 -61022489 + MER5A DNA MER1_type 4 70 -119 892 255 70 72 chr9 81248960 81249474 -61021970 + HAL1 LINE L1 1263 1775 -732 332 195 37 0 chr9 81249808 81249890 -61021554 + HAL1 LINE L1 2138 2222 -285 249 196 0 0 chr9 81249890 81249941 -61021503 + (TG)n Simple_repeat Simple_repeat 2 52 0 276 243 95 48 chr9 81250030 81250219 -61021225 + HAL1 LINE L1 2310 2507 0 300 27 0 0 chr9 81250599 81250636 -61020808 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr9 81253925 81253946 -61017498 + AT_rich Low_complexity Low_complexity 1 21 0 581 168 48 0 chr9 81254652 81254777 -61016667 - AluSp/q SINE Alu -4 309 179 1879 126 0 4 chr9 81254904 81255205 -61016239 + AluSq SINE Alu 21 320 0 5728 218 25 34 chr9 81255205 81257902 -61013542 + L1MC1 LINE L1 3663 6332 -1 3442 193 56 13 chr9 81257916 81258698 -61012746 - Tigger6a DNA MER2_type -266 817 2 864 270 79 55 chr9 81259434 81259653 -61011791 - L1MC4a LINE L1 -991 6817 6584 432 55 0 0 chr9 81259653 81259708 -61011736 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 864 270 79 55 chr9 81259708 81259855 -61011589 - L1MC4a LINE L1 -1224 6584 6442 1961 158 0 0 chr9 81260440 81260738 -61010706 - AluSx SINE Alu -14 298 1 207 0 0 0 chr9 81264013 81264036 -61007408 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 182 241 17 35 chr9 81264063 81264121 -61007323 - L2 LINE L2 -34 3238 3182 633 219 67 0 chr9 81265198 81265362 -61006082 - L1MA4 LINE L1 -10 6290 6116 25 0 0 0 chr9 81265606 81265631 -61005813 + AT_rich Low_complexity Low_complexity 1 25 0 287 336 48 8 chr9 81266815 81266940 -61004504 + MIR SINE MIR 64 193 -69 20676 181 31 24 chr9 81267430 81270131 -61001313 + L1MA3 LINE L1 13 2696 -4869 1644 186 7 3 chr9 81270131 81270416 -61001028 + AluSx SINE Alu 1 286 -26 20676 181 31 24 chr9 81270416 81274094 -60997350 + L1MA3 LINE L1 2696 6440 -1125 6983 61 4 9 chr9 81274110 81275009 -60996435 + L1P LINE L1 2 896 -5250 4185 40 0 0 chr9 81275009 81275514 -60995930 + L1PA3 LINE L1 5651 6155 0 6183 128 49 5 chr9 81275522 81276738 -60994706 + L1MA3 LINE L1 6446 7713 -11 2171 110 7 0 chr9 81277612 81277903 -60993541 - AluSx SINE Alu -19 293 1 226 296 182 23 chr9 81277966 81278098 -60993346 + MIR SINE MIR 11 163 -99 1749 209 111 11 chr9 81278098 81278557 -60992887 + MLT1D LTR MaLR 1 505 0 589 322 15 15 chr9 81279126 81279325 -60992119 + MIR SINE MIR 40 238 -24 198 326 0 0 chr9 81279872 81279921 -60991523 + MIR SINE MIR 47 95 -167 550 335 59 17 chr9 81281138 81281377 -60990067 - MIR SINE MIR -1 261 13 925 114 0 0 chr9 81281840 81281963 -60989481 + AluSc SINE Alu 1 123 -186 635 179 0 8 chr9 81281968 81282091 -60989353 + MLT1A2 LTR MaLR 17 138 -236 1289 87 0 0 chr9 81282092 81282253 -60989191 + AluSc SINE Alu 136 296 -13 484 83 12 24 chr9 81282728 81282812 -60988632 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 717 229 31 49 chr9 81282827 81283050 -60988394 - MLT1A2 LTR MaLR -154 220 2 339 99 28 14 chr9 81283053 81283124 -60988320 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 685 306 66 43 chr9 81283309 81283804 -60987640 + L2 LINE L2 2803 3312 -1 226 322 73 44 chr9 81283958 81284163 -60987281 + L2 LINE L2 2545 2755 -559 190 290 129 32 chr9 81284480 81284604 -60986840 + L2 LINE L2 3165 3300 -13 186 133 0 0 chr9 81288726 81288756 -60982688 + (CTGGGG)n Simple_repeat Simple_repeat 2 31 0 30 45 0 0 chr9 81290992 81291036 -60980408 + AT_rich Low_complexity Low_complexity 1 44 0 31 44 0 0 chr9 81291714 81291759 -60979685 + AT_rich Low_complexity Low_complexity 1 45 0 1446 126 36 5 chr9 81292047 81292270 -60979174 + MER30 DNA MER1_type 1 230 0 2313 221 59 57 chr9 81292617 81293709 -60977735 - L1ME1 LINE L1 -4 6162 5073 1938 162 0 25 chr9 81293709 81294023 -60977421 + AluSx SINE Alu 1 306 -6 2313 221 59 57 chr9 81294023 81294250 -60977194 - L1ME1 LINE L1 -1093 5073 4840 8945 38 4 4 chr9 81294250 81295317 -60976127 + MER11C LTR ERVK 1 1067 -4 2313 221 59 57 chr9 81295317 81295364 -60976080 - L1ME1 LINE L1 -1326 4840 4795 2242 102 3 0 chr9 81296544 81296838 -60974606 + AluSg SINE Alu 1 295 -15 246 328 40 56 chr9 81297317 81297442 -60974002 + L2 LINE L2 3150 3272 0 181 364 110 13 chr9 81299108 81299262 -60972182 - L2 LINE L2 -2814 500 332 2203 98 3 0 chr9 81299310 81299595 -60971849 + AluSg SINE Alu 10 295 -15 2164 194 34 13 chr9 81299894 81300420 -60971024 + MER45B DNA AcHobo 328 941 -99 198 91 0 0 chr9 81300436 81300469 -60970975 + (TA)n Simple_repeat Simple_repeat 1 33 0 1610 195 10 17 chr9 81300469 81300766 -60970678 - AluJo SINE Alu -17 295 1 1042 176 29 0 chr9 81300816 81301020 -60970424 + MER2 DNA MER2_type 1 210 -135 299 211 0 0 chr9 81301053 81301110 -60970334 + MER2 DNA MER2_type 282 338 -7 1191 231 61 45 chr9 81301116 81301540 -60969904 - MLT1C LTR MaLR -31 436 6 370 220 33 0 chr9 81301545 81301636 -60969808 + MER45B DNA AcHobo 947 1040 0 22 56 0 0 chr9 81302368 81302404 -60969040 + AT_rich Low_complexity Low_complexity 1 36 0 1076 238 102 47 chr9 81303673 81304144 -60967300 + MLT1D LTR MaLR 9 505 0 6527 150 7 4 chr9 81304330 81305493 -60965951 - L1P LINE L1 -1369 4777 3612 5041 142 21 25 chr9 81305511 81306809 -60964635 + L1PA16 LINE L1 4873 6166 0 344 272 124 36 chr9 81308807 81308982 -60962462 + MIR SINE MIR 14 204 -58 1695 154 62 109 chr9 81308983 81309147 -60962297 + LTR32 LTR ERVL 15 185 -286 198 71 0 0 chr9 81309147 81309175 -60962269 + (TCCTG)n Simple_repeat Simple_repeat 3 30 0 1695 154 62 109 chr9 81309175 81309459 -60961985 + LTR32 LTR ERVL 185 442 -29 246 62 0 0 chr9 81310810 81310842 -60960602 + (TC)n Simple_repeat Simple_repeat 2 33 0 324 0 0 0 chr9 81310842 81310878 -60960566 + (CA)n Simple_repeat Simple_repeat 1 36 0 340 280 221 43 chr9 81310924 81311299 -60960145 + L2 LINE L2 2858 3299 -14 3064 219 6 13 chr9 81311939 81312980 -60958464 - L1M2 LINE L1 -705 5607 4576 2146 169 45 2 chr9 81312982 81313403 -60958041 - Tigger2 DNA MER2_type 0 2718 2280 303 226 0 0 chr9 81313413 81313475 -60957969 - Tigger2 DNA MER2_type -2656 62 1 1763 219 47 43 chr9 81313528 81314197 -60957247 + L1MA9 LINE L1 5643 6274 -38 435 225 189 30 chr9 81314572 81314741 -60956703 - MIR SINE MIR -19 243 48 294 29 0 0 chr9 81315969 81316004 -60955440 + (CA)n Simple_repeat Simple_repeat 2 36 0 1056 228 32 35 chr9 81318125 81318463 -60952981 + L1MB8 LINE L1 5842 6178 0 444 354 95 39 chr9 81318716 81319317 -60952127 - L2 LINE L2 -74 3198 2565 1101 207 82 0 chr9 81319466 81319770 -60951674 - L1MC2 LINE L1 -8 6336 6008 * 1460 279 28 36 chr9 81319764 81320382 -60951062 - L1M4 LINE L1 -1330 4816 4203 2375 104 0 0 chr9 81320382 81320690 -60950754 - AluY SINE Alu -3 308 1 1460 279 28 36 chr9 81320690 81320759 -60950685 - L1M4 LINE L1 -1943 4203 4135 11532 191 20 43 chr9 81320905 81322269 -60949175 + L1PA13 LINE L1 2787 4180 -1983 2167 113 28 0 chr9 81322269 81322560 -60948884 + AluSg SINE Alu 1 299 -11 11532 191 20 43 chr9 81322560 81324559 -60946885 + L1PA13 LINE L1 4180 6158 -5 285 118 0 0 chr9 81325450 81325501 -60945943 + (TC)n Simple_repeat Simple_repeat 2 52 0 393 22 0 0 chr9 81325501 81325547 -60945897 + (CA)n Simple_repeat Simple_repeat 1 46 0 2017 120 7 7 chr9 81325680 81325988 -60945456 - MSTA LTR MaLR -120 308 1 471 236 32 0 chr9 81326028 81326151 -60945293 - MER103 DNA DNA -38 128 2 282 29 0 0 chr9 81326314 81326349 -60945095 + (CA)n Simple_repeat Simple_repeat 1 35 0 526 222 186 25 chr9 81326368 81326647 -60944797 + MER33 DNA MER1_type 1 324 0 265 242 78 39 chr9 81326653 81326781 -60944663 - L1ME4a LINE L1 -33 6088 5956 208 188 21 0 chr9 81326804 81326852 -60944592 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 279 149 149 0 chr9 81328138 81328212 -60943232 - L1MCb LINE L1 -4096 2468 2384 1919 179 41 0 chr9 81328265 81328634 -60942810 - MER34C LTR ERV1 -163 422 39 3833 205 69 42 chr9 81328676 81329330 -60942114 - L1MCb LINE L1 -4425 2139 1505 684 206 138 105 chr9 81329330 81329902 -60941542 - LTR49 LTR ERV1 0 595 5 396 208 73 10 chr9 81329812 81329908 -60941536 - MER34C LTR ERV1 -449 136 35 * 3833 205 69 42 chr9 81329902 81329943 -60941501 - L1MCb LINE L1 -5059 1505 1467 2783 152 4 15 chr9 81329943 81330405 -60941039 + LTR22A LTR ERVK 1 457 -1 3833 205 69 42 chr9 81330405 81331505 -60939939 - L1MCb LINE L1 -5097 1467 216 4235 122 27 41 chr9 81331505 81332242 -60939202 + LTR8A LTR ERV1 1 727 0 3833 205 69 42 chr9 81332242 81332465 -60938979 - L1MCb LINE L1 -6348 216 1 5137 131 20 36 chr9 81335902 81336788 -60934656 - MER4D LTR ERV1 0 872 1 21 0 0 0 chr9 81337649 81337670 -60933774 + AT_rich Low_complexity Low_complexity 1 21 0 316 357 71 30 chr9 81338418 81338687 -60932757 + L1ME LINE L1 4747 5026 -1120 317 310 38 4 chr9 81338777 81339029 -60932415 + L1ME LINE L1 5191 5452 -712 761 252 263 41 chr9 81339166 81339675 -60931769 + L1ME1 LINE L1 3269 3664 -2482 4056 84 7 0 chr9 81339675 81340223 -60931221 + MER41A LTR ERV1 3 554 0 761 252 263 41 chr9 81340223 81340760 -60930684 + L1ME1 LINE L1 3664 4547 -1599 380 108 46 0 chr9 81340762 81340827 -60930617 - MADE1 DNA Mariner 0 80 13 997 248 14 73 chr9 81340948 81341269 -60930175 + L1ME1 LINE L1 5749 6039 -127 1926 129 4 0 chr9 81341269 81341540 -60929904 - AluSx SINE Alu -7 305 34 997 248 14 73 chr9 81341540 81341658 -60929786 + L1ME1 LINE L1 6039 6162 -4 1251 181 8 15 chr9 81342959 81343219 -60928225 - Tigger5 DNA MER2_type 0 2323 2066 435 278 14 7 chr9 81343491 81343635 -60927809 - L1MEc LINE L1 -3843 2372 2228 647 250 12 17 chr9 81343663 81343835 -60927609 - L1MEc LINE L1 -5892 504 334 204 93 56 37 chr9 81343875 81343929 -60927515 + (TA)n Simple_repeat Simple_repeat 1 55 0 6038 139 68 13 chr9 81344295 81344976 -60926468 + Tigger3b DNA MER2_type 50 817 -2211 2545 105 16 8 chr9 81344976 81345348 -60926096 + THE1C LTR MaLR 1 375 0 6038 139 68 13 chr9 81345348 81345786 -60925658 + Tigger3b DNA MER2_type 817 1230 -1 468 336 64 39 chr9 81345826 81346216 -60925228 - HAL1 LINE L1 -834 1673 1274 7030 52 6 0 chr9 81346216 81347103 -60924341 - L1PA7 LINE L1 -4 6150 5259 1566 222 31 76 chr9 81347171 81347658 -60923786 + MLT1D LTR MaLR 41 505 0 291 130 0 0 chr9 81347731 81347785 -60923659 + (TA)n Simple_repeat Simple_repeat 2 55 0 204 125 0 0 chr9 81347823 81347855 -60923589 + (CA)n Simple_repeat Simple_repeat 2 33 0 208 270 0 52 chr9 81348016 81348131 -60923313 + (TTTA)n Simple_repeat Simple_repeat 1 109 0 1776 123 14 4 chr9 81348506 81348782 -60922662 - L1PA15 LINE L1 -2 6163 5885 1030 233 23 31 chr9 81350134 81350392 -60921052 - MIR SINE MIR 0 262 7 2202 111 0 7 chr9 81351462 81351768 -60919676 + AluY SINE Alu 1 304 -7 262 268 118 39 chr9 81352337 81352490 -60918954 - MIR3 SINE MIR -3 205 41 789 239 69 24 chr9 81352875 81353122 -60918322 + MIR SINE MIR 5 262 0 270 316 112 0 chr9 81354161 81354259 -60917185 + L3 LINE CR1 1450 1558 -19 344 271 53 26 chr9 81354353 81354504 -60916940 - L2 LINE L2 0 3313 3159 217 225 0 0 chr9 81354767 81354807 -60916637 - L2 LINE L2 -364 2949 2910 207 88 0 0 chr9 81356494 81356528 -60914916 + (T)n Simple_repeat Simple_repeat 1 34 0 2320 77 13 7 chr9 81356634 81356933 -60914511 - AluSp SINE Alu -12 301 1 487 348 33 6 chr9 81357857 81358038 -60913406 + MIR3 SINE MIR 9 194 -14 3663 237 80 40 chr9 81358719 81360848 -60910596 - L1PA12 LINE L1 -4547 3034 2 1332 239 3 33 chr9 81361025 81361330 -60910114 - AluJo SINE Alu -14 298 3 886 166 13 7 chr9 81361337 81361488 -60909956 + FRAM SINE Alu 9 160 -16 21 36 0 0 chr9 81361781 81361809 -60909635 + AT_rich Low_complexity Low_complexity 1 28 0 2298 71 0 7 chr9 81362101 81362429 -60909015 + AluY SINE Alu 1 311 0 576 358 115 30 chr9 81362614 81363832 -60907612 + L2 LINE L2 1991 3313 0 23 0 0 0 chr9 81365223 81365246 -60906198 + AT_rich Low_complexity Low_complexity 1 23 0 182 264 19 19 chr9 81368335 81368388 -60903056 + MIR SINE MIR 8 60 -202 1697 179 3 26 chr9 81369931 81370238 -60901206 + AluJb SINE Alu 3 302 -10 232 140 0 0 chr9 81370268 81370318 -60901126 + L1 LINE L1 4797 4846 -1300 314 305 94 16 chr9 81370918 81370992 -60900452 - L2 LINE L2 0 3313 3246 228 35 0 0 chr9 81370992 81371021 -60900423 + (CAA)n Simple_repeat Simple_repeat 2 30 0 314 305 94 16 chr9 81371021 81371074 -60900370 - L2 LINE L2 -67 3246 3176 346 254 51 51 chr9 81371331 81371469 -60899975 - LTR16C LTR ERVL -9 482 345 222 195 0 0 chr9 81372110 81372151 -60899293 + (TG)n Simple_repeat Simple_repeat 2 42 0 698 312 105 23 chr9 81373384 81373814 -60897630 + L2 LINE L2 2824 3288 -25 194 31 0 62 chr9 81374635 81374667 -60896777 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 193 284 0 30 chr9 81376055 81376122 -60895322 + MIR SINE MIR 148 212 -50 204 125 0 0 chr9 81379404 81379436 -60892008 + (TA)n Simple_repeat Simple_repeat 1 32 0 2542 56 0 0 chr9 81380763 81381068 -60890376 - AluY SINE Alu -6 305 1 254 273 0 0 chr9 81381914 81381980 -60889464 + L1ME2 LINE L1 6089 6154 -10 239 227 78 57 chr9 81382007 81382148 -60889296 + L1MC4 LINE L1 7836 7979 -63 1281 141 70 24 chr9 81382596 81382809 -60888635 + AluSg/x SINE Alu 68 290 -22 21 0 0 0 chr9 81382969 81382990 -60888454 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 81383438 81383464 -60887980 + AT_rich Low_complexity Low_complexity 1 26 0 253 272 12 0 chr9 81383906 81383987 -60887457 - L1M4 LINE L1 -1545 4601 4520 443 300 99 82 chr9 81385195 81385904 -60885540 - L1MEc LINE L1 -4736 2386 1666 1974 218 34 46 chr9 81385977 81386538 -60884906 - MLT2B3 LTR ERVL 0 554 1 386 179 0 0 chr9 81386805 81386872 -60884572 - MLT2B3 LTR ERVL -487 67 1 24 32 0 0 chr9 81387347 81387378 -60884066 + AT_rich Low_complexity Low_complexity 1 31 0 470 302 57 37 chr9 81388183 81388428 -60883016 - LTR33 LTR ERVL -230 291 42 768 22 0 0 chr9 81389733 81389823 -60881621 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 1153 184 113 47 chr9 81389836 81389914 -60881530 - MER74A LTR ERVL -1 557 486 1426 222 24 7 chr9 81389914 81390207 -60881237 + AluJo SINE Alu 1 298 -14 1153 184 113 47 chr9 81390207 81390603 -60880841 - MER74A LTR ERVL -72 486 1 1563 248 50 19 chr9 81392381 81392836 -60878608 - L1M4 LINE L1 -2708 3438 2958 8721 117 17 5 chr9 81392836 81394968 -60876476 + L1PA8A LINE L1 3991 6128 -3 1563 248 50 19 chr9 81394968 81395129 -60876315 - L1M4 LINE L1 -3188 2958 2803 1479 130 87 20 chr9 81395129 81395383 -60876061 + MSTA LTR MaLR 158 428 0 1760 198 5 25 chr9 81395401 81395769 -60875675 - MLT1A1 LTR MaLR 0 365 5 1688 283 130 35 chr9 81398042 81398686 -60872758 - L1MCc LINE L1 -4887 1536 954 225 0 0 0 chr9 81398686 81398711 -60872733 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1688 283 130 35 chr9 81398711 81399593 -60871851 - L1MCc LINE L1 -5469 954 25 356 40 20 0 chr9 81401708 81401758 -60869686 + (TG)n Simple_repeat Simple_repeat 1 51 0 746 256 35 0 chr9 81402032 81402235 -60869209 + L1M4 LINE L1 3660 3869 -2277 439 341 11 11 chr9 81402669 81402851 -60868593 - L2 LINE L2 -575 2739 2558 206 79 0 26 chr9 81402858 81402896 -60868548 + (TA)n Simple_repeat Simple_repeat 1 37 0 226 315 71 0 chr9 81403418 81403545 -60867899 - MER112 DNA MER1_type 0 260 125 2834 3 0 0 chr9 81404179 81404483 -60866961 - AluY SINE Alu -7 304 1 273 316 34 62 chr9 81404611 81404788 -60866656 + L3 LINE CR1 1055 1226 -351 234 273 25 58 chr9 81404822 81404943 -60866501 + L3 LINE CR1 1178 1294 -283 211 300 17 0 chr9 81404974 81405034 -60866410 + GA-rich Low_complexity Low_complexity 2 62 0 1130 190 111 76 chr9 81405065 81405460 -60865984 - MER69 DNA AcHobo 0 2526 2118 250 261 15 0 chr9 81405440 81405505 -60865939 - MER69 DNA AcHobo -1952 574 509 * 994 218 22 13 chr9 81405738 81405963 -60865481 + MER97b DNA MER1_type? 12 238 -815 25916 31 1 1 chr9 81406006 81409926 -60861518 - L1PA4 LINE L1 -3 6152 2229 253 98 0 0 chr9 81409930 81409971 -60861473 + U5 snRNA snRNA 6 46 -70 2111 222 86 18 chr9 81409976 81410593 -60860851 + MER97a DNA MER1_type? 233 891 -3 335 340 75 7 chr9 81410696 81410843 -60860601 + L3 LINE CR1 1355 1511 -66 23 0 0 0 chr9 81410901 81410924 -60860520 + AT_rich Low_complexity Low_complexity 1 23 0 2829 182 43 47 chr9 81410924 81411568 -60859876 - L1MA9 LINE L1 -22 6290 5649 2501 268 81 32 chr9 81411576 81412927 -60858517 - L1M3c LINE L1 -4531 1434 305 1898 168 44 55 chr9 81412945 81413379 -60858065 + LTR3 LTR ERVK 1 429 0 439 127 0 0 chr9 81413379 81413442 -60858002 + LTR3b LTR ERVK 438 500 0 1746 280 2 5 chr9 81413453 81413874 -60857570 - L1M3c LINE L1 -5533 422 3 924 253 38 13 chr9 81413913 81414150 -60857294 - MLT1F1 LTR MaLR -3 564 322 442 212 0 0 chr9 81414176 81414261 -60857183 + MER58B DNA MER1_type 182 266 -75 1868 251 37 33 chr9 81414261 81414803 -60856641 + MER74A LTR ERVL 1 544 -14 402 238 36 0 chr9 81414811 81414895 -60856549 + MER58B DNA MER1_type 254 340 -1 295 193 18 0 chr9 81415007 81415064 -60856380 + MER81 DNA DNA 56 113 -1 461 317 22 39 chr9 81415065 81415295 -60856149 - MLT1F1 LTR MaLR -316 226 1 185 316 32 105 chr9 81416539 81416731 -60854713 + MIR SINE MIR 28 211 -51 2675 199 7 0 chr9 81418533 81418990 -60852454 - MER70A LTR ERVL -2 470 11 298 220 17 0 chr9 81419111 81419170 -60852274 - MER70A LTR ERVL -403 69 10 222 167 30 30 chr9 81419583 81419649 -60851795 + A-rich Low_complexity Low_complexity 2 67 0 440 305 20 7 chr9 81420218 81420369 -60851075 + MIR SINE MIR 94 246 -16 313 259 61 47 chr9 81420634 81420766 -60850678 - MIR SINE MIR -74 188 57 512 261 45 100 chr9 81422839 81423150 -60848294 - MLT1I LTR MaLR 0 409 116 235 184 0 0 chr9 81423389 81423438 -60848006 + L1MC4 LINE L1 6653 6701 -1341 212 186 0 23 chr9 81423438 81423481 -60847963 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 24 32 0 0 chr9 81423552 81423583 -60847861 + AT_rich Low_complexity Low_complexity 1 31 0 533 236 70 50 chr9 81423834 81424033 -60847411 - MLT1H LTR MaLR 0 549 347 1681 215 19 27 chr9 81424115 81424491 -60846953 - MSTD LTR MaLR 0 396 24 5648 236 65 62 chr9 81424498 81426227 -60845217 - MSTD-int LTR MaLR 0 1735 2 1215 230 49 27 chr9 81426231 81426587 -60844857 - MSTD LTR MaLR -2 394 1 294 307 79 0 chr9 81426589 81426716 -60844728 - MLT1H LTR MaLR -285 264 128 183 146 0 0 chr9 81427353 81427394 -60844050 + (TG)n Simple_repeat Simple_repeat 1 41 0 1940 139 16 10 chr9 81427502 81427812 -60843632 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 81429460 81429483 -60841961 + AT_rich Low_complexity Low_complexity 1 23 0 354 288 29 3 chr9 81429561 81429731 -60841713 - MLT1J2 LTR MaLR 0 427 280 377 286 102 62 chr9 81430163 81430458 -60840986 + L1MC/D LINE L1 5255 5582 -2226 1796 69 126 7 chr9 81430458 81430735 -60840709 - AluJb SINE Alu -2 310 1 377 286 102 62 chr9 81430735 81430970 -60840474 + L1MC/D LINE L1 5582 5806 -2002 210 71 0 0 chr9 81431195 81431223 -60840221 + (CTG)n Simple_repeat Simple_repeat 3 30 0 212 179 310 16 chr9 81431243 81431343 -60840101 - MIR SINE MIR -24 238 110 374 315 25 59 chr9 81431396 81431634 -60839810 + L2 LINE L2 2645 2874 -440 521 238 55 49 chr9 81431721 81431885 -60839559 + L2 LINE L2 3149 3313 0 194 304 33 33 chr9 81432890 81432982 -60838462 - L3b LINE CR1 -273 1310 1219 246 261 65 22 chr9 81433066 81433158 -60838286 + Charlie8 DNA MER1_type 52 147 -2270 28 0 0 0 chr9 81433528 81433556 -60837888 + AT_rich Low_complexity Low_complexity 1 28 0 306 87 0 0 chr9 81433805 81433851 -60837593 + (CA)n Simple_repeat Simple_repeat 1 46 0 1191 214 84 63 chr9 81436776 81437202 -60834242 - MER63B DNA MER1_type 0 436 2 22 70 0 0 chr9 81437750 81437793 -60833651 + AT_rich Low_complexity Low_complexity 1 43 0 308 291 55 0 chr9 81437854 81437981 -60833463 - LTR67 LTR ERVL -13 544 411 246 385 30 34 chr9 81438128 81438362 -60833082 - LTR67 LTR ERVL -324 233 1 762 336 116 11 chr9 81439772 81440212 -60831232 + L3 LINE CR1 937 1422 -155 383 319 81 72 chr9 81441019 81441367 -60830077 - L2 LINE L2 -10 3303 2953 236 336 33 33 chr9 81441460 81441582 -60829862 - L2 LINE L2 -461 2853 2732 716 259 10 39 chr9 81441594 81441799 -60829645 + MER58A DNA MER1_type 26 224 0 249 396 40 10 chr9 81441877 81442079 -60829365 - L2 LINE L2 -682 2632 2425 26 30 0 0 chr9 81442084 81442117 -60829327 + AT_rich Low_complexity Low_complexity 1 33 0 183 42 0 0 chr9 81442231 81442255 -60829189 + (TA)n Simple_repeat Simple_repeat 2 25 0 37 23 0 0 chr9 81442353 81442397 -60829047 + AT_rich Low_complexity Low_complexity 1 44 0 3484 185 13 14 chr9 81442432 81442536 -60828908 - L1MB3 LINE L1 -1 6182 6079 3539 168 55 123 chr9 81442536 81443183 -60828261 - MER54A LTR ERVL -2 899 338 251 93 23 0 chr9 81443183 81443226 -60828218 + (TTTTG)n Simple_repeat Simple_repeat 4 47 0 3539 168 55 123 chr9 81443226 81443542 -60827902 - MER54A LTR ERVL -563 338 2 3484 185 13 14 chr9 81443542 81444145 -60827299 - L1MB3 LINE L1 -104 6079 5476 21321 185 25 22 chr9 81444175 81449320 -60822124 - L1PA11 LINE L1 -4 7608 1084 1876 156 3 31 chr9 81449320 81449710 -60821734 - AluSq SINE Alu 0 313 1 21321 185 25 22 chr9 81449710 81450790 -60820654 - L1PA11 LINE L1 -6528 1084 9 1326 212 76 12 chr9 81450925 81451368 -60820076 + MLT1D LTR MaLR 1 498 -7 29 47 0 0 chr9 81451891 81451934 -60819510 + AT_rich Low_complexity Low_complexity 1 43 0 26 82 0 0 chr9 81452243 81452304 -60819140 + AT_rich Low_complexity Low_complexity 1 61 0 27 0 0 0 chr9 81452401 81452428 -60819016 + AT_rich Low_complexity Low_complexity 1 27 0 586 273 103 15 chr9 81452731 81453002 -60818442 - L1M4 LINE L1 -2091 4055 3761 988 194 66 62 chr9 81453076 81453365 -60818079 + MLT1B LTR MaLR 101 390 0 1120 249 76 17 chr9 81453365 81453771 -60817673 - L1M4 LINE L1 -3350 2796 2367 340 203 0 0 chr9 81453802 81453871 -60817573 - L1M4 LINE L1 -1200 4946 4878 35 0 0 0 chr9 81454073 81454108 -60817336 + AT_rich Low_complexity Low_complexity 1 35 0 4547 167 50 3 chr9 81454111 81454972 -60816472 - L1MA7 LINE L1 0 6291 5391 2716 191 24 13 chr9 81454984 81455535 -60815909 - L1MC3 LINE L1 -7 7778 7222 286 275 12 0 chr9 81455562 81455642 -60815802 - MLT1F1 LTR MaLR -442 125 45 3357 221 42 26 chr9 81455748 81456818 -60814626 + L1M3 LINE L1 4400 5491 -689 854 256 32 4 chr9 81456827 81457054 -60814390 + L1P3 LINE L1 1 1358 -5640 19370 198 12 10 chr9 81457055 81461185 -60810259 + L1P3 LINE L1 1479 6403 -1181 2481 101 26 0 chr9 81461185 81461531 -60809913 - THE1A LTR MaLR 0 355 1 11448 102 6 4 chr9 81461531 81463108 -60808336 - THE1A-int LTR MaLR 0 1580 1 1307 67 6 0 chr9 81463108 81463273 -60808171 - THE1A LTR MaLR 0 355 190 2262 62 3 0 chr9 81463273 81463562 -60807882 + L1PA11 LINE L1 3451 3740 -2406 1145 90 0 0 chr9 81463559 81463715 -60807729 - THE1A-int LTR MaLR -1424 156 1 * 2629 91 6 0 chr9 81463715 81464068 -60807376 - THE1A LTR MaLR 0 355 1 6064 95 22 1 chr9 81464068 81465260 -60806184 + L1PA11 LINE L1 4961 6171 -3 208 316 0 13 chr9 81465282 81465358 -60806086 + GA-rich Low_complexity Low_complexity 2 76 0 388 111 0 0 chr9 81465438 81465501 -60805943 + L1MB7 LINE L1 6112 6174 -10 2420 70 3 6 chr9 81465501 81465832 -60805612 - L1PA3 LINE L1 -2076 4070 3741 10528 39 1 3 chr9 81465835 81467904 -60803540 + L1PA3 LINE L1 4085 6152 -3 565 134 10 0 chr9 81468054 81468151 -60803293 - L1MA5 LINE L1 -1 6299 6202 1870 187 0 0 chr9 81468222 81468532 -60802912 + AluJb SINE Alu 1 310 -2 913 283 127 8 chr9 81468604 81468982 -60802462 - L2 LINE L2 -941 2373 1951 293 262 37 108 chr9 81469316 81469530 -60801914 - L2 LINE L2 0 3313 3115 559 289 20 20 chr9 81469774 81469975 -60801469 + ERVL LTR ERVL 1645 1845 -3919 1752 160 80 9 chr9 81469976 81470326 -60801118 + THE1C LTR MaLR 1 375 0 11445 173 12 3 chr9 81470428 81472544 -60798900 + L1P LINE L1 2832 4965 -1181 2481 101 26 0 chr9 81472544 81472890 -60798554 - THE1A LTR MaLR 0 355 1 11487 101 5 4 chr9 81472890 81474468 -60796976 - THE1A-int LTR MaLR 0 1580 1 1307 67 6 0 chr9 81474468 81474633 -60796811 - THE1A LTR MaLR 0 355 190 2262 62 3 0 chr9 81474633 81474922 -60796522 + L1PA11 LINE L1 3451 3740 -2406 1145 90 0 0 chr9 81474919 81475075 -60796369 - THE1A-int LTR MaLR -1424 156 1 * 2629 91 6 0 chr9 81475075 81475428 -60796016 - THE1A LTR MaLR 0 355 1 6063 95 22 1 chr9 81475428 81476620 -60794824 + L1PA11 LINE L1 4961 6171 -3 208 316 0 13 chr9 81476642 81476718 -60794726 + GA-rich Low_complexity Low_complexity 2 76 0 388 111 0 0 chr9 81476798 81476861 -60794583 + L1MB7 LINE L1 6112 6174 -10 2420 70 3 6 chr9 81476861 81477192 -60794252 - L1PA6 LINE L1 -2076 4070 3741 10478 41 0 2 chr9 81477195 81479264 -60792180 + L1PA6 LINE L1 4085 6152 -2 2419 156 39 2 chr9 81479552 81479963 -60791481 + MSTC LTR MaLR 1 426 -2 23 92 0 0 chr9 81480356 81480421 -60791023 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr9 81480431 81480459 -60790985 + AT_rich Low_complexity Low_complexity 1 28 0 272 209 45 30 chr9 81480645 81480712 -60790732 + L1ME LINE L1 5741 5808 -313 2308 88 0 7 chr9 81481586 81481894 -60789550 + AluSc SINE Alu 1 306 -3 216 0 0 0 chr9 81482197 81482221 -60789223 + (TTATG)n Simple_repeat Simple_repeat 2 25 0 1389 206 0 54 chr9 81482221 81482529 -60788915 - AluJo SINE Alu -6 296 4 215 291 0 10 chr9 81483500 81483559 -60787885 + G-rich Low_complexity Low_complexity 3 102 0 21 0 0 0 chr9 81484267 81484288 -60787156 + AT_rich Low_complexity Low_complexity 1 21 0 797 229 6 12 chr9 81485595 81485765 -60785679 + MLT1D LTR MaLR 1 169 -336 1434 55 6 0 chr9 81485767 81485948 -60785496 - AluY SINE Alu -11 300 119 359 67 0 18 chr9 81485958 81486016 -60785428 - AluY SINE Alu -169 132 85 1659 211 12 18 chr9 81486016 81486358 -60785086 + MLT1D LTR MaLR 166 505 0 244 310 35 35 chr9 81486420 81486507 -60784937 - MIR SINE MIR -106 102 16 1292 198 46 11 chr9 81486549 81486939 -60784505 - MLT1D LTR MaLR 0 505 19 199 324 44 0 chr9 81487015 81487083 -60784361 - L2 LINE L2 -555 2759 2689 8043 21 0 0 chr9 81487083 81488036 -60783408 - L1PA3 LINE L1 -853 5293 4341 7174 29 1 2 chr9 81488036 81488891 -60782553 + L1PA3 LINE L1 5299 6152 -3 571 134 10 0 chr9 81489041 81489138 -60782306 - L1MA5 LINE L1 -1 6299 6202 1846 187 0 0 chr9 81489209 81489519 -60781925 + AluJb SINE Alu 1 310 -2 913 283 127 8 chr9 81489591 81489969 -60781475 - L2 LINE L2 -941 2373 1951 309 262 37 108 chr9 81490303 81490517 -60780927 - L2 LINE L2 0 3313 3115 1954 323 71 35 chr9 81490761 81490963 -60780481 + HERVL LTR ERVL 1645 1838 -3347 1733 160 80 9 chr9 81490963 81491313 -60780131 + THE1C LTR MaLR 1 375 0 1954 323 71 35 chr9 81491313 81492715 -60778729 + HERVL LTR ERVL 1838 3285 -1900 262 354 53 10 chr9 81492799 81493008 -60778436 + HERVL LTR ERVL 14 231 -5423 369 323 8 0 chr9 81493085 81493215 -60778229 + HERVL LTR ERVL 1024 1154 -4610 490 302 92 28 chr9 81493456 81494007 -60777437 - L1ME3 LINE L1 -330 5832 5239 180 0 0 0 chr9 81494040 81494060 -60777384 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1260 61 0 0 chr9 81494092 81494255 -60777189 - L1PA5 LINE L1 -5 6149 5987 21 36 0 0 chr9 81494302 81494330 -60777114 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 81497664 81497695 -60773749 + AT_rich Low_complexity Low_complexity 1 31 0 283 358 73 7 chr9 81497945 81498082 -60773362 + MIR SINE MIR 9 154 -108 426 325 196 10 chr9 81498125 81498334 -60773110 + MIR SINE MIR 15 262 0 1660 230 61 33 chr9 81499582 81500073 -60771371 - MLT1D LTR MaLR 0 505 1 1718 241 77 18 chr9 81501322 81501761 -60769683 + MLT1F LTR MaLR 70 534 -8 180 111 0 0 chr9 81502122 81502149 -60769295 + (CA)n Simple_repeat Simple_repeat 2 28 0 217 0 61 0 chr9 81504249 81504282 -60767162 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 318 223 41 20 chr9 81504441 81504542 -60766902 + MLT1I LTR MaLR 313 409 0 245 276 0 0 chr9 81505352 81505410 -60766034 - L3 LINE CR1 -3 1574 1517 1290 216 103 27 chr9 81506263 81506633 -60764811 - MER92A LTR ERV1 -14 398 1 210 37 0 0 chr9 81508830 81508857 -60762587 + (TG)n Simple_repeat Simple_repeat 1 27 0 284 269 16 48 chr9 81509367 81509553 -60761891 + (TA)n Simple_repeat Simple_repeat 1 180 0 205 227 23 0 chr9 81509796 81509840 -60761604 + MIR SINE MIR 97 141 -67 406 328 69 7 chr9 81509958 81510166 -60761278 + MIR SINE MIR 28 256 -6 1652 145 95 7 chr9 81510442 81510746 -60760698 - MLT2C1 LTR ERVL -50 347 17 1653 160 127 45 chr9 81510847 81511056 -60760388 + LOR1b LTR ERV1 1 191 -270 2145 136 33 22 chr9 81511056 81511416 -60760028 - THE1B LTR MaLR 0 364 1 1653 160 127 45 chr9 81511416 81511631 -60759813 + LOR1b LTR ERV1 191 460 -1 1148 183 108 20 chr9 81511766 81512017 -60759427 + AluJb SINE Alu 1 273 -39 336 48 0 0 chr9 81512017 81512059 -60759385 + (TC)n Simple_repeat Simple_repeat 2 43 0 21 95 0 0 chr9 81512846 81512909 -60758535 + AT_rich Low_complexity Low_complexity 1 63 0 2819 94 0 8 chr9 81513725 81514127 -60757317 - L1PA8A LINE L1 -8 6123 5725 315 0 0 0 chr9 81515922 81515957 -60755487 + (TG)n Simple_repeat Simple_repeat 2 36 0 311 206 15 15 chr9 81516534 81516602 -60754842 + MIR SINE MIR 91 158 -104 3875 224 113 123 chr9 81519333 81521209 -60750235 + L1MCa LINE L1 3 2014 -4550 318 238 12 0 chr9 81521225 81521305 -60750139 + L1MC3 LINE L1 7678 7758 -27 3581 199 14 77 chr9 81521357 81522413 -60749031 + L1MC3 LINE L1 6812 7783 -2 2074 118 10 0 chr9 81522513 81522801 -60748643 + AluSx SINE Alu 1 291 -21 25 51 0 0 chr9 81524079 81524118 -60747326 + AT_rich Low_complexity Low_complexity 1 39 0 180 315 27 0 chr9 81524722 81524795 -60746649 + MIR SINE MIR 78 152 -110 4547 93 40 22 chr9 81525007 81525154 -60746290 - LTR8 LTR ERV1 0 691 548 2133 114 7 3 chr9 81525154 81525475 -60745969 - AluSx SINE Alu 0 312 1 4547 93 40 22 chr9 81525475 81526006 -60745438 - LTR8 LTR ERV1 -143 548 1 2296 88 0 0 chr9 81526387 81526682 -60744762 + AluSg SINE Alu 1 295 -15 1339 82 0 0 chr9 81527852 81528023 -60743421 - AluSq SINE Alu -12 301 131 338 336 97 42 chr9 81528068 81528306 -60743138 - L1ME LINE L1 -532 5589 5339 595 349 67 18 chr9 81528307 81529027 -60742417 - L1ME LINE L1 -896 5250 4496 23 33 0 0 chr9 81530908 81530938 -60740506 + AT_rich Low_complexity Low_complexity 1 30 0 393 353 27 27 chr9 81533298 81533485 -60737959 - MIR SINE MIR -73 189 3 2522 149 58 15 chr9 81534211 81534480 -60736964 - L1MC1 LINE L1 0 6333 6034 2053 130 55 19 chr9 81534480 81534842 -60736602 - THE1C LTR MaLR 0 375 1 2522 149 58 15 chr9 81534842 81535036 -60736408 - L1MC1 LINE L1 -299 6034 5850 23 0 0 0 chr9 81535074 81535097 -60736347 + AT_rich Low_complexity Low_complexity 1 23 0 431 264 59 68 chr9 81535625 81536053 -60735391 + L1MCc LINE L1 1263 1899 -4890 989 323 71 44 chr9 81536252 81536415 -60735029 - L2 LINE L2 -4 3309 3152 467 17 17 0 chr9 81536415 81536475 -60734969 + (TG)n Simple_repeat Simple_repeat 2 62 0 989 323 71 44 chr9 81536475 81537117 -60734327 - L2 LINE L2 -161 3152 2467 241 331 108 14 chr9 81537187 81537326 -60734118 + MER117 DNA MER1_type 45 196 -1 1050 272 97 34 chr9 81537490 81537935 -60733509 - L1ME2 LINE L1 -9 6155 5683 339 370 106 50 chr9 81537979 81538320 -60733124 + L1MEd LINE L1 268 627 -5492 288 0 0 0 chr9 81538393 81538425 -60733019 + (CA)n Simple_repeat Simple_repeat 1 32 0 256 264 46 75 chr9 81538440 81538811 -60732633 + L1MEd LINE L1 715 1074 -5045 1272 169 124 22 chr9 81538943 81539354 -60732090 - L1MB7 LINE L1 0 6171 5704 180 359 205 0 chr9 81541119 81541197 -60730247 - L2 LINE L2 -17 3255 3162 249 275 29 0 chr9 81541424 81541493 -60729951 + GA-rich Low_complexity Low_complexity 2 72 0 5875 185 60 25 chr9 81541680 81543110 -60728334 - Looper DNA T2_type -8 1550 71 19251 31 2 0 chr9 81543115 81545456 -60725988 - L1P LINE L1 -757 5389 3046 7168 29 3 0 chr9 81545457 81546315 -60725129 + L1PA2 LINE L1 5294 6154 -1 5453 21 0 0 chr9 81546315 81546942 -60724502 + L1PA3 LINE L1 5385 6011 -144 1034 259 24 19 chr9 81548500 81548874 -60722570 - L1ME4a LINE L1 -191 5930 5555 23 0 0 0 chr9 81550503 81550526 -60720918 + AT_rich Low_complexity Low_complexity 1 23 0 249 298 151 20 chr9 81552514 81552675 -60718769 + MIR SINE MIR 17 202 -60 2301 222 67 35 chr9 81553294 81553902 -60717542 + MER92B LTR ERV1 1 628 -8 288 211 0 0 chr9 81554322 81554393 -60717051 + (TA)n Simple_repeat Simple_repeat 1 71 0 225 237 0 0 chr9 81556171 81556230 -60715214 + (TTA)n Simple_repeat Simple_repeat 2 60 0 321 331 71 0 chr9 81556880 81557007 -60714437 + MIR SINE MIR 8 143 -119 304 298 124 31 chr9 81557316 81557477 -60713967 - MIR SINE MIR -72 190 15 261 0 0 0 chr9 81557522 81557551 -60713893 + (TC)n Simple_repeat Simple_repeat 2 30 0 265 322 20 75 chr9 81557573 81557772 -60713672 - L2 LINE L2 -30 3283 3096 808 281 36 20 chr9 81557778 81558189 -60713255 - L2 LINE L2 -180 3133 2715 345 47 0 0 chr9 81559539 81559582 -60711862 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 30 0 0 chr9 81559837 81559870 -60711574 + AT_rich Low_complexity Low_complexity 1 33 0 368 268 41 15 chr9 81560217 81560362 -60711082 + MLT1J LTR MaLR 39 146 -263 2434 130 0 11 chr9 81560691 81561068 -60710376 - THE1C LTR MaLR -2 373 1 9407 113 48 43 chr9 81561068 81562639 -60708805 - THE1C-int LTR MaLR 0 1580 1 2553 111 0 13 chr9 81562639 81563016 -60708428 - THE1C LTR MaLR 0 375 4 614 288 42 42 chr9 81563121 81563499 -60707945 - MER113 DNA MER1_type? -138 383 6 2162 107 0 39 chr9 81564490 81564831 -60706613 + AluSp SINE Alu 1 329 0 273 114 23 0 chr9 81565540 81565584 -60705860 - MADE1 DNA Mariner 0 80 36 342 140 0 0 chr9 81566785 81566835 -60704609 + MER66A LTR ERV1 289 338 -140 23 33 0 0 chr9 81566835 81566865 -60704579 + AT_rich Low_complexity Low_complexity 1 30 0 194 203 177 38 chr9 81568617 81568696 -60702748 + MIR3 SINE MIR 85 174 -34 1224 249 74 68 chr9 81569122 81569717 -60701727 + MLT1E3 LTR MaLR 1 634 -20 695 287 60 14 chr9 81570101 81570317 -60701127 - MIR SINE MIR -6 256 31 205 333 98 8 chr9 81574268 81574391 -60697053 - MIR SINE MIR -109 153 20 297 0 0 0 chr9 81574651 81574684 -60696760 + (TG)n Simple_repeat Simple_repeat 2 34 0 7212 45 1 7 chr9 81575519 81577142 -60694302 + L1PA5 LINE L1 4536 6152 -2 3280 239 39 13 chr9 81577142 81578045 -60693399 - L1M4c LINE L1 -1246 5136 4211 1910 149 16 3 chr9 81578168 81578267 -60693177 - L1PB1 LINE L1 -43 6108 6010 14377 191 30 20 chr9 81578267 81580117 -60691327 - L1PA8 LINE L1 -162 6726 4895 2048 144 0 0 chr9 81580117 81580416 -60691028 - AluSx SINE Alu -13 299 1 14377 191 30 20 chr9 81580416 81583742 -60687702 - L1PA8 LINE L1 -1993 4895 1571 1143 273 36 6 chr9 81583754 81584220 -60687224 - L1M4c LINE L1 -2625 3757 3278 11389 192 38 8 chr9 81584346 81586801 -60684643 - L1M4c LINE L1 -3065 3317 747 270 0 0 0 chr9 81586801 81586831 -60684613 + (TTG)n Simple_repeat Simple_repeat 1 30 0 11389 192 38 8 chr9 81586831 81587488 -60683956 - L1M4c LINE L1 -5635 747 111 2487 166 96 0 chr9 81587504 81587950 -60683494 + MER1A DNA MER1_type 41 529 0 664 115 10 0 chr9 81587952 81588056 -60683388 - L1M4c LINE L1 -6267 117 13 * 2687 222 67 20 chr9 81588054 81589320 -60682124 + L1MB7 LINE L1 4844 6167 -17 299 130 19 0 chr9 81592964 81593018 -60678426 + CT-rich Low_complexity Low_complexity 3 57 0 326 302 29 50 chr9 81593504 81593643 -60677801 - MIR3 SINE MIR -50 158 23 194 244 93 23 chr9 81593771 81593857 -60677587 - L3 LINE CR1 -809 768 677 * 214 291 66 66 chr9 81593839 81593990 -60677454 + L2 LINE L2 3122 3272 0 1518 208 7 14 chr9 81594627 81594920 -60676524 - AluJb SINE Alu -19 293 3 750 167 8 0 chr9 81594940 81595060 -60676384 - FLAM_C SINE Alu -9 124 4 563 278 110 43 chr9 81595314 81595563 -60675881 - HERV16 LTR ERVL -2706 2290 2059 1743 191 2 72 chr9 81595563 81595982 -60675462 - MLT1B LTR MaLR 0 390 1 563 278 110 43 chr9 81595982 81596355 -60675089 - HERV16 LTR ERVL -2937 2059 1669 3864 186 28 12 chr9 81596356 81597174 -60674270 - Tigger6a DNA MER2_type -229 854 24 250 271 47 0 chr9 81597570 81597677 -60673767 + L1ME LINE L1 5764 5875 -295 201 239 0 42 chr9 81597840 81597911 -60673533 + A-rich Low_complexity Low_complexity 5 72 0 17702 48 54 3 chr9 81597915 81600309 -60671135 + L1PA2 LINE L1 3 2519 -3627 12661 22 4 0 chr9 81600409 81602620 -60668824 + L1PA2 LINE L1 3798 6015 -140 859 25 8 0 chr9 81602724 81602842 -60668602 - L1P LINE L1 -2852 3294 3176 198 0 0 0 chr9 81602895 81602917 -60668527 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 6699 68 24 10 chr9 81602944 81604623 -60666821 - L1PA8 LINE L1 -1 6171 4482 325 159 16 0 chr9 81605059 81605122 -60666322 + MLT2C1 LTR ERVL 277 340 -57 659 201 66 84 chr9 81605128 81605317 -60666127 + L1M4 LINE L1 4129 4313 -1833 1479 194 124 14 chr9 81605317 81605672 -60665772 + MSTD LTR MaLR 1 394 -2 659 201 66 84 chr9 81605672 81605755 -60665689 + L1M4 LINE L1 4313 4396 -1750 508 279 31 25 chr9 81605756 81605917 -60665527 + MLT1A2 LTR MaLR 1 162 -212 927 223 0 24 chr9 81605974 81606180 -60665264 + MLT1A2 LTR MaLR 174 374 0 2813 211 52 0 chr9 81606180 81606814 -60664630 + MLT1A2-int LTR MaLR 1 667 -704 263 222 42 14 chr9 81606816 81606888 -60664556 + MLT1A2-int LTR MaLR 811 884 -487 2254 120 0 0 chr9 81606957 81607256 -60664188 - AluSg SINE Alu -11 299 1 269 203 17 0 chr9 81607262 81607321 -60664123 + MLT1A2-int LTR MaLR 676 735 -1000 637 270 28 65 chr9 81607399 81607586 -60663858 + MLT1A2-int LTR MaLR 1287 1464 -271 180 0 0 0 chr9 81607586 81607606 -60663838 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 637 270 28 65 chr9 81607606 81607666 -60663778 + MLT1A2-int LTR MaLR 1464 1525 -210 980 128 61 0 chr9 81608641 81608805 -60662639 + MER58B DNA MER1_type 168 341 0 323 377 9 9 chr9 81609068 81609174 -60662270 + MER91A DNA MER1_type 35 140 -56 2288 111 0 0 chr9 81609191 81609488 -60661956 + AluSc SINE Alu 1 297 -12 4703 106 6 42 chr9 81609940 81611241 -60660203 + L1PA12 LINE L1 4888 6168 0 26 0 0 0 chr9 81611345 81611371 -60660073 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr9 81611552 81611596 -60659848 + AT_rich Low_complexity Low_complexity 1 44 0 280 373 121 25 chr9 81611830 81611926 -60659518 - L2 LINE L2 -337 2977 2892 1282 160 69 148 chr9 81611926 81612165 -60659279 - MLT1A2 LTR MaLR 0 374 179 276 30 0 0 chr9 81612165 81612198 -60659246 + (GA)n Simple_repeat Simple_repeat 2 34 0 1282 160 69 148 chr9 81612198 81612364 -60659080 - MLT1A2 LTR MaLR -195 179 1 280 373 121 25 chr9 81612364 81612739 -60658705 - L2 LINE L2 -422 2892 2461 1405 200 12 3 chr9 81614310 81614650 -60656794 + L1P LINE L1 2954 3296 -2850 22 35 0 0 chr9 81616284 81616313 -60655131 + AT_rich Low_complexity Low_complexity 1 29 0 421 268 0 36 chr9 81616313 81616481 -60654963 + L1M4 LINE L1 357 518 -6321 424 299 96 11 chr9 81617279 81617456 -60653988 - MIR SINE MIR 0 262 71 25 51 0 0 chr9 81617689 81617728 -60653716 + AT_rich Low_complexity Low_complexity 1 39 0 9675 39 7 1 chr9 81617728 81619736 -60651708 - L1PA4 LINE L1 -6 6149 4182 39508 43 23 1 chr9 81619736 81625751 -60645693 - L1PA2 LINE L1 -7 6148 1 31410 59 1 2 chr9 81625751 81629946 -60641498 - L1PA4 LINE L1 -1952 4194 3 311 260 91 115 chr9 81630389 81630762 -60640682 + L1M4 LINE L1 877 1240 -5183 4668 182 53 21 chr9 81630961 81632277 -60639167 - L1MA4A LINE L1 -24 6981 5573 2130 127 23 49 chr9 81632277 81632662 -60638782 - THE1C LTR MaLR 0 375 1 4668 182 53 21 chr9 81632662 81633401 -60638043 - L1MA4A LINE L1 -1432 5573 4859 1587 78 0 0 chr9 81633402 81633606 -60637838 - L1PA7 LINE L1 -3 6151 5948 1605 30 0 0 chr9 81633606 81633805 -60637639 + L1PA7 LINE L1 5758 5956 -198 723 145 0 0 chr9 81633804 81633921 -60637523 - L1MA4A LINE L1 -1978 4870 4754 * 3020 202 45 34 chr9 81633923 81634314 -60637130 - L1MA4A LINE L1 -2973 3875 3490 2346 88 0 10 chr9 81634314 81634622 -60636822 - AluY SINE Alu -1 310 6 3020 202 45 34 chr9 81634622 81635140 -60636304 - L1MA4A LINE L1 -3358 3490 2956 1483 263 40 58 chr9 81635161 81635609 -60635835 - L1MA4A LINE L1 -5803 1046 607 351 310 63 52 chr9 81635702 81635876 -60635568 - L1MA4A LINE L1 -6064 785 610 2262 244 22 8 chr9 81635886 81636387 -60635057 - L1MA4A LINE L1 -6339 510 3 248 381 153 40 chr9 81636579 81636931 -60634513 + L2 LINE L2 2865 3256 -16 2286 103 0 3 chr9 81637325 81637626 -60633818 - AluSg SINE Alu -8 302 3 429 350 49 35 chr9 81637774 81638000 -60633444 - MIR SINE MIR -27 235 7 21 57 0 0 chr9 81638264 81638299 -60633145 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr9 81638351 81638374 -60633070 + AT_rich Low_complexity Low_complexity 1 23 0 384 262 28 0 chr9 81638665 81638806 -60632638 + (TA)n Simple_repeat Simple_repeat 2 146 0 247 326 178 8 chr9 81640113 81640242 -60631202 - L2 LINE L2 -571 2743 2593 194 208 25 133 chr9 81642310 81642430 -60629014 + L3 LINE CR1 902 1008 -569 1653 151 13 44 chr9 81642437 81642735 -60628709 + AluJo SINE Alu 1 289 -23 575 146 118 0 chr9 81642767 81642877 -60628567 + AluSp/q SINE Alu 189 311 -2 479 306 18 57 chr9 81642879 81643108 -60628336 + MIR SINE MIR 29 248 -14 187 339 200 16 chr9 81643207 81643452 -60627992 + L3 LINE CR1 1050 1339 -238 276 211 19 0 chr9 81643474 81643526 -60627918 - L2 LINE L2 -2 3270 3218 219 280 0 0 chr9 81643774 81643824 -60627620 - L2 LINE L2 -339 2974 2925 202 285 45 123 chr9 81643884 81643944 -60627500 - L2 LINE L2 -519 2795 2732 2200 94 7 29 chr9 81643944 81644252 -60627192 + AluSc SINE Alu 1 301 -8 202 285 45 123 chr9 81644252 81644370 -60627074 - L2 LINE L2 -582 2732 2631 861 206 6 6 chr9 81644494 81644659 -60626785 + FRAM SINE Alu 1 164 -12 328 286 107 71 chr9 81644673 81644813 -60626631 + L3 LINE CR1 1430 1574 -3 386 302 57 19 chr9 81645104 81645263 -60626181 + MIR SINE MIR 42 206 -56 29 47 0 0 chr9 81645272 81645315 -60626129 + AT_rich Low_complexity Low_complexity 1 43 0 566 303 117 41 chr9 81646753 81647440 -60624004 + L1ME LINE L1 4807 5558 -608 32 0 0 0 chr9 81647831 81647863 -60623581 + AT_rich Low_complexity Low_complexity 1 32 0 239 98 20 39 chr9 81648417 81648468 -60622976 - LTR66 LTR ERVL -171 439 390 238 288 122 32 chr9 81649461 81649603 -60621841 + MIR SINE MIR 20 175 -33 218 336 144 8 chr9 81650409 81650534 -60620910 - MIR SINE MIR -31 231 90 491 293 33 0 chr9 81651712 81651862 -60619582 + LTR16C LTR ERVL 337 491 0 312 226 0 60 chr9 81652235 81652319 -60619125 - L3b LINE CR1 -230 1353 1275 180 158 0 79 chr9 81653791 81653829 -60617615 + MIR SINE MIR 111 145 -117 399 348 86 44 chr9 81653859 81654522 -60616922 - L2 LINE L2 -55 3258 2574 575 179 123 6 chr9 81654717 81654879 -60616565 - Charlie4 DNA MER1_type -1747 214 34 2169 150 94 13 chr9 81655025 81655419 -60616025 + MSTB LTR MaLR 1 426 0 1825 140 53 0 chr9 81655738 81656023 -60615421 - AluSx SINE Alu -12 300 1 218 358 101 0 chr9 81656075 81656184 -60615260 + MIR SINE MIR 20 139 -69 314 287 98 43 chr9 81657336 81657500 -60613944 + MIR SINE MIR 84 256 -6 275 273 23 0 chr9 81658095 81658183 -60613261 + (TA)n Simple_repeat Simple_repeat 1 90 0 3859 216 35 19 chr9 81658376 81659401 -60612043 - L1MB1 LINE L1 -1383 4763 3722 3042 184 21 9 chr9 81659398 81660399 -60611045 + L1MB1 LINE L1 4776 5791 -377 * 621 69 0 0 chr9 81660399 81660486 -60610958 + (TG)n Simple_repeat Simple_repeat 2 88 0 3042 184 21 9 chr9 81660486 81660539 -60610905 + L1MB1 LINE L1 5791 5842 -326 1325 216 23 11 chr9 81660540 81660804 -60610640 + L1MCa LINE L1 362 628 -5798 432 172 0 32 chr9 81660805 81660898 -60610546 - L1MCa LINE L1 -5150 1791 1702 4340 240 47 11 chr9 81660903 81662251 -60609193 + L1M4 LINE L1 2550 3945 -2201 1690 312 62 45 chr9 81662288 81663228 -60608216 - L1MCa LINE L1 -5459 964 9 443 350 90 29 chr9 81663294 81663723 -60607721 + L2 LINE L2 2665 3110 -203 1574 162 63 33 chr9 81663835 81664169 -60607275 - Tigger7 DNA MER2_type -6 2481 2138 708 154 0 41 chr9 81664166 81664289 -60607155 - Tigger7 DNA MER2_type -587 118 1 * 2233 173 34 5 chr9 81664545 81664961 -60606483 + MSTA LTR MaLR 1 428 0 8615 161 45 18 chr9 81664961 81665346 -60606098 + MSTA-int LTR MaLR 1 374 -1277 1986 152 0 10 chr9 81665346 81665656 -60605788 - AluSq SINE Alu -6 307 1 8615 161 45 18 chr9 81665656 81666877 -60604567 + MSTA-int LTR MaLR 374 1651 0 2182 142 89 2 chr9 81666877 81667271 -60604173 + MSTA LTR MaLR 1 428 0 346 175 25 0 chr9 81667727 81667807 -60603637 + CT-rich Low_complexity Low_complexity 3 84 0 1624 166 55 17 chr9 81668011 81668301 -60603143 - AluJo SINE Alu -11 301 1 21 0 0 0 chr9 81668872 81668893 -60602551 + AT_rich Low_complexity Low_complexity 1 21 0 226 185 0 46 chr9 81669140 81669205 -60602239 + GA-rich Low_complexity Low_complexity 5 66 0 30 27 0 0 chr9 81669750 81669787 -60601657 + AT_rich Low_complexity Low_complexity 1 37 0 314 321 234 0 chr9 81669952 81670204 -60601240 - L2 LINE L2 -13 3300 2990 465 328 124 35 chr9 81670216 81670554 -60600890 + L2 LINE L2 2521 2888 -426 254 354 61 0 chr9 81670791 81670890 -60600554 + L2 LINE L2 3168 3272 0 1014 92 8 0 chr9 81671066 81671197 -60600247 - AluY SINE Alu -179 132 1 1833 175 46 0 chr9 81671812 81672137 -60599307 + MER58B DNA MER1_type 2 341 0 352 335 95 0 chr9 81672636 81672794 -60598650 - MIR3 SINE MIR -10 198 26 24 0 0 0 chr9 81672940 81672964 -60598480 + AT_rich Low_complexity Low_complexity 1 24 0 1399 196 60 11 chr9 81673518 81673799 -60597645 - AluJo SINE Alu -17 295 1 318 106 0 0 chr9 81675136 81675183 -60596261 + (TG)n Simple_repeat Simple_repeat 1 47 0 1339 184 4 9 chr9 81675505 81675738 -60595706 - AluSq SINE Alu -81 232 1 868 125 15 224 chr9 81675813 81676085 -60595359 - MER7C DNA MER2_type -387 215 1 742 340 124 16 chr9 81676277 81676727 -60594717 - L3 LINE CR1 -113 1464 966 229 258 15 0 chr9 81676730 81676796 -60594648 + CT-rich Low_complexity Low_complexity 4 70 0 335 307 174 31 chr9 81676803 81677090 -60594354 - L3 LINE CR1 -596 981 654 678 153 24 61 chr9 81677101 81677331 -60594113 - THE1C LTR MaLR 0 375 205 1763 97 15 0 chr9 81677331 81677590 -60593854 - THE1C-int LTR MaLR -1317 263 1 2413 103 30 8 chr9 81677590 81677957 -60593487 - THE1C LTR MaLR 0 375 1 8935 127 49 49 chr9 81677957 81679350 -60592094 - THE1C-int LTR MaLR 0 1580 185 2083 129 0 35 chr9 81679350 81679661 -60591783 - AluSx SINE Alu -12 300 1 8935 127 49 49 chr9 81679661 81679847 -60591597 - THE1C-int LTR MaLR -1394 186 1 2702 112 0 3 chr9 81679847 81680223 -60591221 - THE1C LTR MaLR 0 375 1 207 100 0 0 chr9 81681116 81681146 -60590298 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 8717 30 8 0 chr9 81681159 81682972 -60588472 - L1PA4 LINE L1 0 6155 4335 1142 116 16 0 chr9 81683300 81683489 -60587955 - L1MA6 LINE L1 0 6300 6109 10318 200 29 66 chr9 81683502 81686162 -60585282 - L1M2c LINE L1 -4601 2567 1 2566 206 68 98 chr9 81686161 81687981 -60583463 - L1MCb LINE L1 -4763 1801 3 * 352 280 61 0 chr9 81688132 81688264 -60583180 + L1M4 LINE L1 4554 4693 -1453 1003 343 25 10 chr9 81688344 81688744 -60582700 - L2 LINE L2 0 3313 2908 445 241 115 29 chr9 81689492 81689838 -60581606 - L1MC4a LINE L1 -1966 5842 5298 24 53 0 0 chr9 81689941 81689979 -60581465 + AT_rich Low_complexity Low_complexity 1 38 0 406 337 58 17 chr9 81690326 81690498 -60580946 + L2 LINE L2 311 489 -2825 1429 324 136 11 chr9 81690505 81691240 -60580204 + L2 LINE L2 1195 2021 -1293 791 255 35 156 chr9 81691243 81692008 -60579436 - MER77 LTR ERV1 -34 571 60 938 258 96 34 chr9 81692048 81692404 -60579040 + L2 LINE L2 2029 2406 -908 261 365 32 8 chr9 81692407 81692533 -60578911 + L2 LINE L2 2554 2682 -632 235 336 76 15 chr9 81692646 81692777 -60578667 + L2 LINE L2 3171 3309 -4 735 113 45 0 chr9 81692986 81693119 -60578325 + Alu SINE Alu 172 310 0 1097 261 53 43 chr9 81694587 81694981 -60576463 + LTR16C LTR ERVL 86 483 -8 826 254 34 58 chr9 81695624 81695959 -60575485 - L1ME LINE L1 -481 5683 5354 1500 229 43 16 chr9 81696139 81696514 -60574930 - MSTB LTR MaLR -32 394 10 762 212 0 0 chr9 81696523 81696655 -60574789 + Tigger3(Golem) DNA MER2_type 2897 3028 -1 342 361 35 30 chr9 81696805 81697007 -60574437 + L2 LINE L2 2871 3073 -199 31 68 0 0 chr9 81697085 81697144 -60574300 + AT_rich Low_complexity Low_complexity 1 59 0 935 211 48 118 chr9 81697641 81698039 -60573405 + MLT1B LTR MaLR 15 384 -6 230 225 0 0 chr9 81698286 81698326 -60573118 + (CACG)n Simple_repeat Simple_repeat 2 41 0 2103 124 0 7 chr9 81698898 81699197 -60572247 + AluSc SINE Alu 3 299 -10 2082 109 0 23 chr9 81700090 81700394 -60571050 - AluSc SINE Alu -12 297 1 25 0 0 0 chr9 81700698 81700723 -60570721 + AT_rich Low_complexity Low_complexity 1 25 0 1639 100 112 23 chr9 81700820 81701079 -60570365 - AluSx SINE Alu -22 290 9 436 345 29 6 chr9 81703259 81703433 -60568011 - MER117 DNA MER1_type -18 179 2 21 36 0 0 chr9 81703561 81703589 -60567855 + AT_rich Low_complexity Low_complexity 1 28 0 31703 30 0 0 chr9 81704000 81708589 -60562855 + L1PA2 LINE L1 1566 6155 0 884 275 45 5 chr9 81708584 81708962 -60562482 - L1M4 LINE L1 -1598 4548 4156 * 1430 194 58 30 chr9 81708977 81709306 -60562138 - LTR8 LTR ERV1 0 691 354 820 55 4 71 chr9 81709306 81709565 -60561879 + (TA)n Simple_repeat Simple_repeat 1 241 0 1506 226 14 0 chr9 81709572 81709855 -60561589 - AluJo SINE Alu -25 287 1 1634 248 79 14 chr9 81709867 81710427 -60561017 - L1MEc LINE L1 -1755 4460 3865 379 311 0 0 chr9 81710462 81710568 -60560876 - L1MEc LINE L1 -3339 2876 2771 1221 291 79 40 chr9 81710569 81711325 -60560119 - L1MEc LINE L1 -4536 1860 1075 3098 47 0 0 chr9 81711328 81711713 -60559731 - L1PA3 LINE L1 -1 6154 5770 939 81 24 0 chr9 81711713 81711836 -60559608 - AluY SINE Alu -28 283 158 2575 274 45 22 chr9 81711866 81712827 -60558617 - L1MEc LINE L1 -5375 1021 39 239 227 114 34 chr9 81714061 81714149 -60557295 + MER94 DNA DNA 6 100 -34 21 36 0 0 chr9 81714337 81714365 -60557079 + AT_rich Low_complexity Low_complexity 1 28 0 546 302 30 12 chr9 81715725 81715894 -60555550 + L2 LINE L2 2705 2876 -438 891 142 0 45 chr9 81715936 81716091 -60555353 - AluSc SINE Alu -28 281 134 2234 129 74 22 chr9 81716717 81717120 -60554324 + MSTA LTR MaLR 5 428 0 609 188 17 114 chr9 81717247 81717423 -60554021 - MER45A DNA AcHobo -19 159 1 24 32 0 0 chr9 81717513 81717544 -60553900 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr9 81717758 81717803 -60553641 + AT_rich Low_complexity Low_complexity 1 45 0 361 320 76 17 chr9 81718318 81718490 -60552954 + MIR3 SINE MIR 21 202 -6 222 316 63 25 chr9 81718573 81718652 -60552792 - L2 LINE L2 -5 3267 3186 404 326 35 0 chr9 81719050 81719191 -60552253 - MIR3 SINE MIR -5 203 58 21 0 0 0 chr9 81719538 81719559 -60551885 + AT_rich Low_complexity Low_complexity 1 21 0 381 315 34 20 chr9 81720287 81720436 -60551008 - MIR3 SINE MIR -9 199 49 1502 215 196 2 chr9 81720444 81720867 -60550577 + MLT1D LTR MaLR 1 505 0 233 322 0 0 chr9 81721130 81721189 -60550255 - L2 LINE L2 -3 3269 3211 1850 192 124 3 chr9 81721221 81721601 -60549843 - MSTB LTR MaLR 0 426 1 928 211 0 2 chr9 81722182 81722440 -60549004 + MER2 DNA MER2_type 43 345 0 242 308 11 11 chr9 81722725 81722816 -60548628 - MLT1K LTR MaLR -30 558 468 180 111 0 0 chr9 81722889 81722916 -60548528 + (T)n Simple_repeat Simple_repeat 1 27 0 921 205 79 0 chr9 81723215 81723444 -60548000 + L1P LINE L1 4795 5041 -1105 2120 109 0 0 chr9 81724498 81724782 -60546662 + AluSc SINE Alu 1 284 -25 24 53 0 0 chr9 81724840 81724878 -60546566 + AT_rich Low_complexity Low_complexity 1 38 0 955 275 20 30 chr9 81725086 81725384 -60546060 + L1MDa LINE L1 124 418 -6122 310 309 40 75 chr9 81725395 81725596 -60545848 + L1MDa LINE L1 585 778 -5762 627 264 88 21 chr9 81725761 81726000 -60545444 + L1MDa LINE L1 909 1163 -5380 319 132 171 40 chr9 81726041 81726117 -60545327 - MSTC LTR MaLR -342 86 1 539 234 7 15 chr9 81726117 81726254 -60545190 - L1 LINE L1 -1476 4670 4535 8998 61 106 6 chr9 81726255 81727525 -60543919 + L1P LINE L1 1 1397 -4749 5370 237 60 33 chr9 81727673 81728339 -60543105 - L1MC/D LINE L1 -438 5804 5157 1942 132 59 34 chr9 81728339 81728694 -60542750 + THE1B LTR MaLR 1 364 0 5370 237 60 33 chr9 81728694 81730650 -60540794 - L1MC/D LINE L1 -1085 5157 3088 274 328 97 86 chr9 81731338 81731606 -60539838 + L2 LINE L2 2997 3267 -5 247 269 93 37 chr9 81731745 81731853 -60539591 - LTR16C LTR ERVL -289 202 89 769 288 121 43 chr9 81731942 81732621 -60538823 - L1 LINE L1 -2168 3978 3354 1524 127 5 5 chr9 81732621 81732841 -60538603 - AluSc SINE Alu -7 302 83 769 288 121 43 chr9 81732841 81732872 -60538572 - L1 LINE L1 -2792 3354 3327 2197 135 16 24 chr9 81732872 81733250 -60538194 + THE1C LTR MaLR 1 375 0 769 288 121 43 chr9 81733250 81733898 -60537546 - L1 LINE L1 -2819 3327 2512 272 288 50 0 chr9 81734848 81734928 -60536516 + MIR SINE MIR 79 162 -100 782 322 89 30 chr9 81735328 81736057 -60535387 - L2 LINE L2 0 3313 2537 435 258 146 75 chr9 81736169 81736464 -60534980 + MER102b DNA MER1_type 26 341 0 34 24 0 0 chr9 81736602 81736643 -60534801 + AT_rich Low_complexity Low_complexity 1 41 0 2421 64 0 46 chr9 81737642 81737968 -60533476 - AluY SINE Alu 0 311 1 247 283 99 47 chr9 81739709 81739942 -60531502 - L1ME LINE L1 -276 5845 5601 244 183 42 28 chr9 81741404 81741475 -60529969 + (AATAG)n Simple_repeat Simple_repeat 3 74 0 261 57 0 0 chr9 81741937 81741972 -60529472 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 700 198 0 0 chr9 81741972 81742093 -60529351 - FLAM_C SINE Alu -22 121 1 1537 208 21 9 chr9 81742417 81742753 -60528691 - MER58B DNA MER1_type -1 340 1 307 329 0 0 chr9 81743514 81743593 -60527851 - L2 LINE L2 -15 3257 3179 335 330 21 56 chr9 81744126 81744414 -60527030 + HERV16 LTR ERVL 4719 4996 0 566 306 56 53 chr9 81744414 81744843 -60526601 + LTR16A LTR ERVL 1 431 -26 518 309 108 8 chr9 81745065 81745434 -60526010 - HAL1 LINE L1 -1067 1440 1035 21 71 0 0 chr9 81745451 81745493 -60525951 + AT_rich Low_complexity Low_complexity 1 42 0 7251 37 5 3 chr9 81745533 81746419 -60525025 - L1PA7 LINE L1 -7 6147 5261 897 207 60 0 chr9 81746419 81746798 -60524646 + L1MDa LINE L1 2114 2613 -3927 2975 158 85 16 chr9 81746842 81747454 -60523990 + L1MC1 LINE L1 5678 6331 -2 3966 225 18 2 chr9 81747515 81748413 -60523031 + L1MC3 LINE L1 6866 7777 -8 1870 253 31 34 chr9 81748430 81749201 -60522243 + L1MDa LINE L1 2637 3376 -3164 2139 79 0 4 chr9 81750125 81750392 -60521052 + AluY SINE Alu 22 287 -24 24 53 0 0 chr9 81750392 81750430 -60521014 + AT_rich Low_complexity Low_complexity 1 38 0 611 345 61 48 chr9 81750522 81750997 -60520447 + L3 LINE CR1 976 1456 -121 939 156 90 84 chr9 81752073 81752394 -60519050 + MER33 DNA MER1_type 2 324 0 647 285 29 0 chr9 81752499 81752671 -60518773 - MER45A DNA AcHobo -1 177 1 22 35 0 0 chr9 81753554 81753583 -60517861 + AT_rich Low_complexity Low_complexity 1 29 0 40 59 0 0 chr9 81754363 81754431 -60517013 + AT_rich Low_complexity Low_complexity 1 68 0 889 305 91 3 chr9 81755963 81756314 -60515130 + MLT1H LTR MaLR 122 503 -46 229 305 84 21 chr9 81756559 81756654 -60514790 + L2 LINE L2 2942 3042 -230 265 299 85 49 chr9 81756704 81756928 -60514516 + L2 LINE L2 1779 2010 -1304 504 239 8 39 chr9 81757006 81757136 -60514308 + L2 LINE L2 3188 3313 0 300 243 117 19 chr9 81757311 81757414 -60514030 - MIR SINE MIR -40 222 110 286 396 0 9 chr9 81758645 81758751 -60512693 - L2 LINE L2 -49 3223 3119 21 57 0 0 chr9 81759498 81759533 -60511911 + AT_rich Low_complexity Low_complexity 1 35 0 641 249 89 0 chr9 81760854 81761023 -60510421 + MER3 DNA MER1_type 26 209 0 22 35 0 0 chr9 81761496 81761525 -60509919 + AT_rich Low_complexity Low_complexity 1 29 0 999 266 114 19 chr9 81761640 81762009 -60509435 + MLT1J2 LTR MaLR 17 420 -30 23 33 0 0 chr9 81762234 81762264 -60509180 + AT_rich Low_complexity Low_complexity 1 30 0 1371 181 13 106 chr9 81762760 81762872 -60508572 + MLT1A2 LTR MaLR 5 126 -248 1020 152 6 0 chr9 81762872 81763043 -60508401 + L1PA8 LINE L1 6001 6172 0 1371 181 13 106 chr9 81763043 81763317 -60508127 + MLT1A2 LTR MaLR 126 355 -19 23 78 0 0 chr9 81763586 81763637 -60507807 + AT_rich Low_complexity Low_complexity 1 51 0 274 335 144 34 chr9 81764785 81765167 -60506277 + LTR33A LTR ERVL 55 478 -45 38 68 0 0 chr9 81765994 81766067 -60505377 + AT_rich Low_complexity Low_complexity 1 73 0 3796 173 14 9 chr9 81766171 81766860 -60504584 + L1MC1 LINE L1 5512 6204 -129 221 271 0 0 chr9 81767288 81767336 -60504108 + L2 LINE L2 3258 3305 -8 2238 132 0 0 chr9 81767384 81767695 -60503749 - AluSx SINE Alu -1 311 1 435 272 30 41 chr9 81769272 81769441 -60502003 - L2 LINE L2 -1 3312 3146 258 253 0 0 chr9 81769444 81769527 -60501917 + (TG)n Simple_repeat Simple_repeat 2 84 0 1065 289 83 23 chr9 81769527 81770242 -60501202 - L2 LINE L2 -162 3151 2428 2253 148 34 31 chr9 81770249 81770800 -60500644 + MLT2A2 LTR ERVL 1 554 0 313 321 27 0 chr9 81770810 81770922 -60500522 - L2 LINE L2 -904 2410 2296 1248 218 0 8 chr9 81770922 81771165 -60500279 + AluJo SINE Alu 1 241 -71 2217 116 0 0 chr9 81771185 81771488 -60499956 + AluY SINE Alu 1 303 -8 485 301 57 24 chr9 81771506 81771715 -60499729 - L2 LINE L2 -1036 2278 2063 371 149 60 0 chr9 81771746 81771813 -60499631 - MLT2A2 LTR ERVL -97 356 286 499 293 112 11 chr9 81771818 81771933 -60499511 - L2 LINE L2 -1273 2041 1939 1240 175 52 62 chr9 81771933 81772224 -60499220 - AluJo SINE Alu -20 292 5 499 293 112 11 chr9 81772224 81772296 -60499148 - L2 LINE L2 -1375 1939 1835 878 271 57 59 chr9 81775085 81775525 -60495919 + HAL1b LINE L1 239 677 -671 7519 27 28 0 chr9 81776733 81778016 -60493428 - L1PA4 LINE L1 -2 6153 4854 35405 49 1 1 chr9 81778016 81782459 -60488985 + L1PA4 LINE L1 410 4853 -1293 3296 259 48 11 chr9 81783123 81783948 -60487496 + L1MB8 LINE L1 6 861 -5998 1314 228 53 11 chr9 81783945 81784305 -60487139 + L1MB8 LINE L1 4801 5175 -1782 * 1544 197 21 10 chr9 81784308 81784597 -60486847 + AluJb SINE Alu 4 295 -17 26 0 0 0 chr9 81784597 81784623 -60486821 + AT_rich Low_complexity Low_complexity 1 26 0 395 174 101 18 chr9 81784682 81784791 -60486653 + L1P LINE L1 5213 5330 -816 * 5027 150 24 15 chr9 81784760 81785702 -60485742 + L1PA13 LINE L1 5196 6148 -15 2024 233 37 70 chr9 81785690 81785914 -60485530 + L1MB8 LINE L1 5206 5436 -1521 * 1487 184 0 65 chr9 81785914 81786223 -60485221 - AluJb SINE Alu -13 299 11 2024 233 37 70 chr9 81786223 81786830 -60484614 + L1MB8 LINE L1 5436 6010 -947 249 53 26 0 chr9 81786828 81786866 -60484578 - L1P5 LINE L1 -314 5837 5799 * 265 81 0 81 chr9 81786866 81786928 -60484516 + LTR66 LTR ERVL 383 439 -171 254 203 0 16 chr9 81786928 81786992 -60484452 + (TA)n Simple_repeat Simple_repeat 1 63 0 771 112 6 87 chr9 81786995 81787156 -60484288 - L1P5 LINE L1 -359 5792 5645 2194 103 0 3 chr9 81787156 81787450 -60483994 + L1PB1 LINE L1 5840 6148 -3 24 32 0 0 chr9 81787450 81787481 -60483963 + AT_rich Low_complexity Low_complexity 1 31 0 3557 208 57 10 chr9 81787535 81788480 -60482964 + L1MB8 LINE L1 5983 6977 -12 199 247 27 55 chr9 81789173 81789246 -60482198 + MIR SINE MIR 70 140 -122 2020 53 72 4 chr9 81789256 81789576 -60481868 + AluY SINE Alu 1 338 0 2578 260 123 29 chr9 81789793 81791538 -60479906 - L1ME1 LINE L1 -5 6956 5022 5728 44 7 3 chr9 81791538 81792260 -60479184 - L1PA4 LINE L1 -4 6151 5427 2578 260 123 29 chr9 81792260 81792376 -60479068 - L1ME1 LINE L1 -1939 5022 4918 1154 193 151 4 chr9 81792376 81792641 -60478803 - MLT2D LTR ERVL -110 304 1 520 269 25 30 chr9 81792641 81792838 -60478606 - L1ME1 LINE L1 -2233 4708 4513 933 212 49 0 chr9 81792840 81793024 -60478420 - MLT1D LTR MaLR -2 503 311 1142 244 48 52 chr9 81793026 81793525 -60477919 - L1ME1 LINE L1 -4920 1503 1007 624 246 96 25 chr9 81793525 81793724 -60477720 - MER58C DNA MER1_type -1 214 2 1450 307 47 63 chr9 81793759 81794690 -60476754 - L1ME1 LINE L1 -5486 937 22 559 292 96 0 chr9 81795169 81795347 -60476097 + MER58C DNA MER1_type 19 213 -2 194 401 69 9 chr9 81795353 81795570 -60475874 - L2 LINE L2 -61 3252 3023 3726 53 4 4 chr9 81799627 81800098 -60471346 - L1PA7 LINE L1 0 6154 5684 427 283 26 20 chr9 81800275 81800427 -60471017 + MIR SINE MIR 96 248 -14 182 355 86 36 chr9 81800980 81801200 -60470244 + L3b LINE CR1 1111 1341 -242 1733 198 18 53 chr9 81801341 81801740 -60469704 - MLT1B LTR MaLR -5 385 1 1081 175 5 5 chr9 81803046 81803235 -60468209 + MER5A DNA MER1_type 1 189 0 234 160 0 0 chr9 81804561 81804611 -60466833 + (TG)n Simple_repeat Simple_repeat 2 51 0 224 141 0 70 chr9 81805057 81805128 -60466316 + (A)n Simple_repeat Simple_repeat 1 66 0 2562 55 0 3 chr9 81806216 81806528 -60464916 + AluY SINE Alu 1 311 0 373 252 21 46 chr9 81807222 81807374 -60464070 + LTR50 LTR ERVL 1 148 -625 1877 142 0 22 chr9 81807457 81807773 -60463671 - AluSg SINE Alu 0 310 2 389 327 51 0 chr9 81807828 81807984 -60463460 + LTR50 LTR ERVL 474 637 -158 361 228 22 0 chr9 81808011 81808103 -60463341 + LTR33A LTR ERVL 430 523 0 244 288 55 0 chr9 81808117 81808190 -60463254 + MIR SINE MIR 156 232 -30 1713 214 16 62 chr9 81810782 81811267 -60460177 - MLT1D LTR MaLR 0 505 43 781 223 133 19 chr9 81811405 81811661 -60459783 + MLT1D LTR MaLR 63 347 -158 386 305 32 63 chr9 81812208 81812398 -60459046 + MER91B DNA MER1_type 1 184 -6 1005 330 107 19 chr9 81812445 81813266 -60458178 + L1MEc LINE L1 35 927 -5469 3624 214 52 68 chr9 81813347 81814457 -60456987 + L1MC4a LINE L1 5865 6957 -851 2156 106 3 17 chr9 81814472 81814773 -60456671 + AluSp SINE Alu 1 297 -16 650 246 50 33 chr9 81814774 81815014 -60456430 + L1M4 LINE L1 3604 3847 -2299 253 244 26 0 chr9 81815043 81815121 -60456323 + L1ME2 LINE L1 6076 6155 -9 295 362 37 0 chr9 81815860 81816078 -60455366 - L1ME LINE L1 -264 5857 5632 3916 120 18 10 chr9 81816085 81816701 -60454743 - L1PA15 LINE L1 0 6165 5545 2949 182 57 29 chr9 81816705 81817464 -60453980 - LTR1B LTR ERV1 -1 784 1 4240 175 30 1 chr9 81817464 81818514 -60452930 - L1P4 LINE L1 -621 5544 4470 21 0 0 0 chr9 81818759 81818780 -60452664 + AT_rich Low_complexity Low_complexity 1 21 0 248 132 38 0 chr9 81820821 81820874 -60450570 + L1MC4 LINE L1 6649 6703 -1339 231 36 0 0 chr9 81821237 81821265 -60450179 + (TATATG)n Simple_repeat Simple_repeat 4 31 0 880 283 53 25 chr9 81821295 81821652 -60449792 - L2 LINE L2 -65 3248 2882 836 180 12 160 chr9 81821653 81822053 -60449391 - L1MEc LINE L1 -3213 3002 2662 644 141 0 67 chr9 81822054 81822189 -60449255 - FLAM_C SINE Alu -17 126 1 890 275 31 37 chr9 81822189 81822607 -60448837 - L1MEc LINE L1 -3547 2668 2285 809 273 61 77 chr9 81822605 81823309 -60448135 - L1MEc LINE L1 -4023 2373 1681 * 2112 265 73 23 chr9 81823301 81823633 -60447811 - L1MEc LINE L1 -3646 2736 2422 768 204 101 52 chr9 81823633 81823941 -60447503 - MER33 DNA MER1_type 0 324 2 2112 265 73 23 chr9 81823941 81824930 -60446514 - L1MEc LINE L1 -3960 2422 1232 335 205 5 116 chr9 81824946 81825136 -60446308 - L1MEc LINE L1 -5267 1296 1128 3281 188 47 20 chr9 81825170 81825920 -60445524 - L1MC2 LINE L1 -8 6336 5567 261 357 0 8 chr9 81825918 81826044 -60445400 + L1P LINE L1 2938 3062 -3084 * 1377 220 70 77 chr9 81826119 81827222 -60444222 - L1MCb LINE L1 -3564 3000 1907 * 3405 227 24 52 chr9 81827205 81828675 -60442769 - L1MCb LINE L1 -4849 1196 6 485 295 51 0 chr9 81828693 81828910 -60442534 - L1MEc LINE L1 -5455 1108 881 24 67 0 0 chr9 81828951 81828996 -60442448 + AT_rich Low_complexity Low_complexity 1 45 0 3794 189 25 47 chr9 81828996 81829954 -60441490 - L1MA9 LINE L1 -38 6274 5335 415 245 9 0 chr9 81829947 81830053 -60441391 - L1PA16 LINE L1 -124 6042 5936 * 649 313 51 59 chr9 81830050 81830558 -60440886 - L1MEc LINE L1 -5720 843 340 765 139 0 51 chr9 81832453 81832590 -60438854 + FLAM_C SINE Alu 1 130 -3 24 0 0 0 chr9 81832616 81832640 -60438804 + AT_rich Low_complexity Low_complexity 1 24 0 400 110 105 0 chr9 81832645 81832865 -60438579 + (TA)n Simple_repeat Simple_repeat 1 243 0 288 77 0 0 chr9 81832865 81832904 -60438540 + (CA)n Simple_repeat Simple_repeat 2 40 0 1075 123 0 0 chr9 81832904 81833050 -60438394 + FRAM SINE Alu 5 150 -26 25 31 0 0 chr9 81833052 81833084 -60438360 + AT_rich Low_complexity Low_complexity 1 32 0 30 59 0 0 chr9 81834222 81834273 -60437171 + AT_rich Low_complexity Low_complexity 1 51 0 1132 304 103 41 chr9 81837262 81838169 -60433275 - L2 LINE L2 -5 3308 2360 1170 303 194 13 chr9 81838177 81838765 -60432679 - L2 LINE L2 -1315 1999 1288 1639 188 0 34 chr9 81838765 81839063 -60432381 + AluJo SINE Alu 3 290 -22 1170 303 194 13 chr9 81839063 81839104 -60432340 - L2 LINE L2 -2026 1288 1256 1747 230 81 80 chr9 81839243 81840295 -60431149 - L1MC5 LINE L1 -58 7903 6851 630 183 33 33 chr9 81840299 81840452 -60430992 + MER63 DNA MER1_type 503 655 -405 698 234 102 20 chr9 81840460 81840657 -60430787 + MER58A DNA MER1_type 9 221 -3 1385 223 42 73 chr9 81840659 81840910 -60430534 + MER63 DNA MER1_type 647 904 -156 1602 199 30 0 chr9 81840910 81841207 -60430237 + AluJb SINE Alu 1 306 -6 2079 109 26 7 chr9 81841208 81841510 -60429934 + AluSx SINE Alu 1 308 -4 1385 223 42 73 chr9 81841510 81841682 -60429762 + MER63 DNA MER1_type 903 1059 -1 2054 134 0 0 chr9 81841714 81842013 -60429431 - AluSx SINE Alu -13 299 1 287 341 7 29 chr9 81842423 81842561 -60428883 - MER117 DNA MER1_type -39 158 24 24 0 0 0 chr9 81844827 81844851 -60426593 + AT_rich Low_complexity Low_complexity 1 24 0 3222 113 34 12 chr9 81845089 81845592 -60425852 - MER75 DNA T2_type 0 514 1 191 302 81 0 chr9 81846286 81846372 -60425072 + L2 LINE L2 3218 3310 -3 2509 45 3 13 chr9 81846895 81847207 -60424237 + AluY SINE Alu 3 311 0 945 122 0 0 chr9 81847225 81847356 -60424088 + FLAM_C SINE Alu 3 133 0 3588 123 8 2 chr9 81847375 81847903 -60423541 + LTR26B LTR ERV1 1 531 0 30 0 0 0 chr9 81848415 81848445 -60422999 + AT_rich Low_complexity Low_complexity 1 30 0 240 319 69 14 chr9 81848795 81848939 -60422505 + LTR68 LTR ERV1 290 441 -299 242 380 35 23 chr9 81849501 81849672 -60421772 - L2 LINE L2 -420 2894 2722 574 288 152 0 chr9 81849703 81849887 -60421557 + MIR SINE MIR 51 262 0 419 350 66 23 chr9 81849884 81850141 -60421303 - L2 LINE L2 -566 2748 2481 * 1427 192 31 18 chr9 81850273 81850559 -60420885 - AluJo SINE Alu -18 294 5 890 204 11 42 chr9 81851669 81851860 -60419584 + MER20 DNA MER1_type 5 189 -30 286 272 60 76 chr9 81852006 81852190 -60419254 - L2 LINE L2 -2401 913 733 25 0 0 0 chr9 81855412 81855437 -60416007 + AT_rich Low_complexity Low_complexity 1 25 0 815 192 0 0 chr9 81856321 81856477 -60414967 - L1 LINE L1 -3278 2868 2713 * 4346 179 38 8 chr9 81856476 81857393 -60414051 + L1MA7 LINE L1 4365 5253 -1038 192 40 0 0 chr9 81857393 81857418 -60414026 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4346 179 38 8 chr9 81857418 81858338 -60413106 + L1MA7 LINE L1 5253 6291 0 2512 82 3 0 chr9 81859127 81859505 -60411939 + L1PA6 LINE L1 5805 6154 0 405 188 0 0 chr9 81859623 81859708 -60411736 + (TG)n Simple_repeat Simple_repeat 2 86 0 333 271 0 12 chr9 81859721 81859806 -60411638 - L1MC4 LINE L1 -1340 6702 6619 357 217 0 0 chr9 81859914 81859997 -60411447 + (TA)n Simple_repeat Simple_repeat 2 84 0 213 349 67 47 chr9 81860517 81860666 -60410778 - L2 LINE L2 0 3272 3121 189 264 56 28 chr9 81862184 81862256 -60409188 - MIR SINE MIR -105 157 84 27 29 0 0 chr9 81862956 81862990 -60408454 + AT_rich Low_complexity Low_complexity 1 34 0 7215 43 6 0 chr9 81863153 81864126 -60407318 + L1PA5 LINE L1 5168 6145 -9 1294 120 138 0 chr9 81865458 81865675 -60405769 - AluSc SINE Alu -8 301 55 184 416 9 9 chr9 81865955 81866068 -60405376 + MIR SINE MIR 37 149 -113 200 345 138 17 chr9 81866288 81866404 -60405040 + L2 LINE L2 3126 3255 -17 202 135 0 77 chr9 81866562 81866614 -60404830 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 1423 168 56 80 chr9 81867056 81867460 -60403984 + L1MCb LINE L1 448 1051 -5366 883 287 34 27 chr9 81867458 81868076 -60403368 - L1MEc LINE L1 -3546 2669 2086 * 505 329 97 5 chr9 81868309 81868525 -60402919 - MIR SINE MIR -6 256 21 1916 140 0 10 chr9 81868585 81868885 -60402559 - AluSc SINE Alu -12 297 1 326 371 54 11 chr9 81868909 81869095 -60402349 - L1M4 LINE L1 -1898 4248 4055 28 29 0 0 chr9 81869141 81869176 -60402268 + AT_rich Low_complexity Low_complexity 1 35 0 1713 160 14 62 chr9 81869328 81869684 -60401760 + MER44D DNA MER2_type 1 609 0 2270 143 42 14 chr9 81869975 81870409 -60401035 - L1MA9 LINE L1 -9 6303 5858 501 58 0 0 chr9 81870697 81870766 -60400678 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 817 171 144 27 chr9 81870893 81871080 -60400364 - MER3 DNA MER1_type 0 209 1 564 291 46 15 chr9 81873510 81873738 -60397706 + MIR SINE MIR 13 245 -17 261 0 0 0 chr9 81873790 81873819 -60397625 + (CA)n Simple_repeat Simple_repeat 2 30 0 248 105 0 0 chr9 81873977 81874015 -60397429 - L1MC4 LINE L1 -1347 6695 6658 * 251 306 47 0 chr9 81874009 81874094 -60397350 + L1MC4 LINE L1 6614 6702 -1340 228 344 0 0 chr9 81874033 81874123 -60397321 - L1MC4 LINE L1 -1339 6703 6614 * 25 0 0 0 chr9 81874934 81874959 -60396485 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr9 81875550 81875587 -60395857 + AT_rich Low_complexity Low_complexity 1 37 0 715 216 179 12 chr9 81875998 81876160 -60395284 + MER5A DNA MER1_type 1 189 0 10743 58 1 4 chr9 81876379 81877767 -60393677 - L1PA4 LINE L1 -3065 3081 1698 17743 50 5 0 chr9 81877767 81880854 -60390590 + L1PA4 LINE L1 3050 6155 0 11019 141 17 28 chr9 81880863 81882784 -60388660 - Tigger1 DNA MER2_type -518 1900 1 428 18 0 0 chr9 81883304 81883360 -60388084 - L1PA4 LINE L1 -171 5984 5929 1056 225 53 3 chr9 81883474 81883776 -60387668 + MER33 DNA MER1_type 6 322 -2 590 250 14 7 chr9 81883802 81883950 -60387494 - L2 LINE L2 -493 2821 2673 327 296 17 86 chr9 81884194 81884427 -60387017 - L2 LINE L2 -10 3303 3087 1787 133 183 14 chr9 81884429 81884789 -60386655 - MSTA LTR MaLR -7 421 1 1746 177 30 53 chr9 81884882 81885025 -60386419 + MLT1A1 LTR MaLR 11 156 -209 2239 100 0 16 chr9 81885025 81885336 -60386108 + AluSg SINE Alu 1 306 -4 1746 177 30 53 chr9 81885336 81885553 -60385891 + MLT1A1 LTR MaLR 156 363 -2 389 292 26 39 chr9 81885563 81885717 -60385727 - L2 LINE L2 -327 2986 2835 443 217 54 16 chr9 81886989 81887118 -60384326 - MER103 DNA DNA -20 146 13 255 125 0 0 chr9 81887418 81887458 -60383986 + (TC)n Simple_repeat Simple_repeat 2 41 0 267 274 30 12 chr9 81888099 81888192 -60383252 + MIR SINE MIR 64 146 -62 1114 193 9 45 chr9 81888195 81888418 -60383026 + MER58A DNA MER1_type 1 215 -9 1304 198 47 58 chr9 81889682 81890051 -60381393 + MLT1A1 LTR MaLR 8 365 0 245 346 56 50 chr9 81890359 81890538 -60380906 - MIR SINE MIR -17 245 66 271 250 30 20 chr9 81891216 81891316 -60380128 + (CATATA)n Simple_repeat Simple_repeat 2 102 0 776 189 0 0 chr9 81891522 81891665 -60379779 - L1MA8 LINE L1 -363 5928 5786 430 193 14 71 chr9 81891668 81891808 -60379636 + L1MA7 LINE L1 5973 6104 -187 516 315 32 14 chr9 81892421 81892637 -60378807 + MIR SINE MIR 42 261 -1 4376 128 34 19 chr9 81892732 81893526 -60377918 + L1PA13 LINE L1 5358 6163 0 2266 75 10 14 chr9 81893543 81893836 -60377608 + AluY SINE Alu 1 292 -19 286 214 100 0 chr9 81895617 81895687 -60375757 + MER119 DNA MER1_type 6 82 -501 222 62 0 0 chr9 81895718 81895750 -60375694 + (CAATT)n Simple_repeat Simple_repeat 2 33 0 551 167 7 80 chr9 81895788 81895926 -60375518 + MER119 DNA MER1_type 455 582 -1 1164 304 108 49 chr9 81896912 81898062 -60373382 + L2 LINE L2 2073 3304 -9 2192 117 0 3 chr9 81898280 81898578 -60372866 + AluSx SINE Alu 3 299 -13 1994 151 0 7 chr9 81898931 81899235 -60372209 + AluSx SINE Alu 1 302 -10 1188 254 86 14 chr9 81900713 81901130 -60370314 + L1MCb LINE L1 3 449 -5596 2078 222 54 4 chr9 81901139 81901640 -60369804 + MER74A LTR ERVL 3 528 -30 3498 211 99 56 chr9 81901686 81902802 -60368642 + L1MCb LINE L1 463 1530 -5034 1647 190 37 3 chr9 81902802 81902936 -60368508 + AluJb SINE Alu 1 129 -183 2109 100 41 0 chr9 81902936 81903227 -60368217 + AluSg SINE Alu 1 303 -7 1647 190 37 3 chr9 81903227 81903392 -60368052 + AluJb SINE Alu 129 310 -2 3498 211 99 56 chr9 81903392 81903720 -60367724 + L1MCb LINE L1 1530 1843 -4721 2321 92 3 3 chr9 81903720 81904024 -60367420 + AluSp SINE Alu 3 306 -7 3498 211 99 56 chr9 81904024 81904462 -60366982 + L1MCb LINE L1 1843 2261 -4303 2213 127 0 13 chr9 81904462 81904778 -60366666 + AluSx SINE Alu 1 312 0 3498 211 99 56 chr9 81904778 81905482 -60365962 + L1MCb LINE L1 2261 3158 -3406 253 136 0 0 chr9 81907706 81907750 -60363694 + MADE1 DNA Mariner 37 80 0 285 218 59 40 chr9 81908418 81908519 -60362925 - MLT1J LTR MaLR -3 508 406 321 26 0 0 chr9 81910916 81910954 -60360490 + (CA)n Simple_repeat Simple_repeat 1 38 0 899 204 37 19 chr9 81911465 81911734 -60359710 + MER33 DNA MER1_type 47 320 -4 198 0 0 0 chr9 81912439 81912461 -60358983 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 559 204 128 17 chr9 81912531 81912562 -60358882 + L1MC4 LINE L1 7614 7640 -402 1361 212 42 23 chr9 81912562 81912916 -60358528 + MER46B DNA MER2_type 1 236 0 559 204 128 17 chr9 81912916 81913056 -60358388 + L1MC4 LINE L1 7640 7804 -238 47 44 0 0 chr9 81913167 81913235 -60358209 + AT_rich Low_complexity Low_complexity 1 68 0 203 130 43 22 chr9 81915072 81915118 -60356326 + (CA)n Simple_repeat Simple_repeat 2 48 0 2235 108 0 20 chr9 81916168 81916474 -60354970 - AluSq SINE Alu -13 300 1 204 40 0 0 chr9 81916642 81916667 -60354777 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1071 205 92 55 chr9 81916824 81917171 -60354273 - MLT1A1 LTR MaLR 0 365 6 21 0 0 0 chr9 81917293 81917314 -60354130 + AT_rich Low_complexity Low_complexity 1 21 0 911 217 201 10 chr9 81918077 81918381 -60353063 + MLT1D LTR MaLR 141 502 -3 231 36 0 0 chr9 81919826 81919854 -60351590 + (TG)n Simple_repeat Simple_repeat 2 29 0 201 256 0 0 chr9 81920273 81920316 -60351128 + CT-rich Low_complexity Low_complexity 2 44 0 209 239 6 153 chr9 81920343 81920506 -60350938 - MIR SINE MIR -11 251 113 2194 160 0 11 chr9 81921173 81921542 -60349902 + MLT1A1 LTR MaLR 1 365 0 2642 101 3 8 chr9 81922045 81922411 -60349033 + THE1B LTR MaLR 1 364 0 238 301 0 10 chr9 81922486 81922589 -60348855 + L1MC4 LINE L1 7926 8027 -15 25 31 0 0 chr9 81923360 81923392 -60348052 + AT_rich Low_complexity Low_complexity 1 32 0 1787 174 21 12 chr9 81923480 81923820 -60347624 + MER61A LTR ERV1 1 343 0 29 0 0 0 chr9 81923971 81924000 -60347444 + AT_rich Low_complexity Low_complexity 1 29 0 1592 210 0 10 chr9 81924000 81924291 -60347153 - AluJo SINE Alu -24 288 1 2267 128 22 30 chr9 81924420 81924787 -60346657 - THE1B LTR MaLR 0 364 1 2097 105 24 27 chr9 81924814 81925108 -60346336 + AluY SINE Alu 1 293 -18 2290 120 3 0 chr9 81927569 81927878 -60343566 + AluSp SINE Alu 1 310 -3 329 91 0 18 chr9 81927886 81927941 -60343503 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1914 166 41 32 chr9 81928765 81929319 -60342125 + MLT2A2 LTR ERVL 2 554 0 1950 154 3 0 chr9 81929359 81929651 -60341793 + AluSx SINE Alu 1 293 -19 567 332 40 18 chr9 81930375 81930755 -60340689 - LTR16A LTR ERVL -6 444 57 191 296 267 0 chr9 81931003 81931138 -60340306 - MIR3 SINE MIR -34 174 4 2586 104 6 8 chr9 81931439 81931795 -60339649 + THE1A LTR MaLR 1 355 0 11391 105 2 11 chr9 81931799 81933394 -60338050 + THE1A-int LTR MaLR 1 1580 0 2583 104 0 3 chr9 81933394 81933750 -60337694 + THE1A LTR MaLR 1 355 0 432 0 0 0 chr9 81935178 81935226 -60336218 + (TG)n Simple_repeat Simple_repeat 2 49 0 26 30 0 0 chr9 81935287 81935320 -60336124 + AT_rich Low_complexity Low_complexity 1 33 0 193 310 69 62 chr9 81935550 81935695 -60335749 + L2 LINE L2 2517 2662 -652 251 212 24 24 chr9 81935752 81935837 -60335607 - L1MC5 LINE L1 -50 7911 7827 2643 209 46 89 chr9 81935840 81936304 -60335140 + MER21B LTR ERV1 1 414 -449 4853 101 3 19 chr9 81936304 81937005 -60334439 + LTR8 LTR ERV1 1 690 -1 2643 209 46 89 chr9 81937005 81937386 -60334058 + MER21B LTR ERV1 414 810 -53 1123 196 132 71 chr9 81937420 81938123 -60333321 - L1MC5 LINE L1 -133 7828 7083 288 250 33 0 chr9 81938272 81938332 -60333112 + L2 LINE L2 3204 3265 -7 224 310 171 68 chr9 81938749 81938836 -60332608 + L2 LINE L2 1978 2055 -1259 1896 184 3 0 chr9 81938836 81939141 -60332303 + AluJo SINE Alu 1 306 -6 224 310 171 68 chr9 81939141 81939572 -60331872 + L2 LINE L2 2055 2440 -874 1990 153 16 16 chr9 81939572 81940260 -60331184 - L1MA5 LINE L1 -4 6296 5910 1728 165 24 24 chr9 81939635 81939722 -60331722 - L1MA4 LINE L1 -67 6233 6147 2382 106 0 0 chr9 81939722 81940024 -60331420 - AluSq SINE Alu -11 302 1 1728 165 24 24 chr9 81940024 81940276 -60331168 - L1MA4 LINE L1 -152 6148 5894 224 310 171 68 chr9 81940260 81940502 -60330942 + L2 LINE L2 2440 2817 -497 * 2653 135 9 24 chr9 81940643 81941095 -60330349 + MER65A LTR ERV1 1 445 0 23 0 0 0 chr9 81941186 81941209 -60330235 + AT_rich Low_complexity Low_complexity 1 23 0 3383 71 21 5 chr9 81941218 81941655 -60329789 - MLT2A1 LTR ERVL 0 444 1 980 279 66 33 chr9 81942646 81943480 -60327964 - L1MEc LINE L1 -3530 2685 1875 247 238 0 0 chr9 81943854 81943917 -60327527 - L1ME2 LINE L1 -10 6154 6092 * 2069 231 85 14 chr9 81943889 81944741 -60326703 - L1PA8A LINE L1 -652 5479 4585 5826 187 23 13 chr9 81945792 81947391 -60324053 - L1MC1 LINE L1 -1 6332 4724 2206 73 4 4 chr9 81948719 81948992 -60322452 - AluY SINE Alu -10 301 29 1307 142 65 3 chr9 81949438 81949756 -60321688 + MSTA LTR MaLR 4 426 0 200 267 17 50 chr9 81949931 81949991 -60321453 - L2 LINE L2 -3 3310 3253 318 26 0 0 chr9 81950130 81950169 -60321275 + (CA)n Simple_repeat Simple_repeat 2 40 0 439 216 40 122 chr9 81950302 81950524 -60320920 - L1ME2 LINE L1 0 6164 5961 219 259 0 0 chr9 81951857 81951911 -60319533 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 1827 54 4 97 chr9 81952043 81952254 -60319190 + L1PB1 LINE L1 5900 6080 -71 1989 122 59 17 chr9 81952254 81952542 -60318902 + AluSx SINE Alu 1 300 -12 1827 54 4 97 chr9 81952542 81952608 -60318836 + L1PB1 LINE L1 6080 6151 0 865 203 34 29 chr9 81952848 81953233 -60318211 - L1MD1 LINE L1 0 6242 5677 1325 203 64 80 chr9 81953237 81953612 -60317832 - MLT1A2 LTR MaLR -5 369 1 3116 233 45 39 chr9 81953619 81955093 -60316351 - L1MD1 LINE L1 -567 5675 4203 2024 109 4 4 chr9 81955136 81955402 -60316042 + AluSx SINE Alu 1 266 -46 297 0 0 0 chr9 81955405 81955438 -60316006 + (TA)n Simple_repeat Simple_repeat 1 33 0 296 238 16 0 chr9 81956824 81956887 -60314557 - MLT1C LTR MaLR -398 69 6 504 305 21 21 chr9 81957283 81957473 -60313971 + L1MEc LINE L1 390 579 -5817 883 158 11 79 chr9 81957545 81957735 -60313709 - MER4A LTR ERV1 -110 554 378 237 125 62 21 chr9 81957791 81957839 -60313605 - MER4A LTR ERV1 -561 103 54 252 250 0 0 chr9 81960274 81960354 -60311090 + L1MA7 LINE L1 6202 6281 -10 4808 82 3 2 chr9 81960829 81961462 -60309982 - L1PA7 LINE L1 -3 6151 5518 428 332 75 10 chr9 81961799 81961998 -60309446 + MIR SINE MIR 2 213 -49 1606 93 0 40 chr9 81962003 81962228 -60309216 + AluSq SINE Alu 1 216 -97 463 281 113 14 chr9 81962987 81963208 -60308236 - L1MCb LINE L1 -5604 441 199 2119 241 27 22 chr9 81963209 81963806 -60307638 - MER49 LTR ERV1 -2 921 322 2845 84 16 3 chr9 81965154 81965522 -60305922 + MLT2A2 LTR ERVL 34 406 -47 25 31 0 0 chr9 81965522 81965554 -60305890 + AT_rich Low_complexity Low_complexity 1 32 0 264 93 47 0 chr9 81965560 81965603 -60305841 - MLT2A1 LTR ERVL -10 434 390 517 277 36 0 chr9 81966573 81966710 -60304734 + L1 LINE L1 543 684 -6105 * 1863 216 27 16 chr9 81966702 81967147 -60304297 + L1 LINE L1 4091 4540 -2248 303 28 0 0 chr9 81967420 81967456 -60303988 + (TG)n Simple_repeat Simple_repeat 2 37 0 291 329 29 54 chr9 81968291 81968571 -60302873 + L1ME3A LINE L1 5684 5956 -214 225 163 116 0 chr9 81968811 81968854 -60302590 + L1P4 LINE L1 5699 5746 -420 612 215 37 18 chr9 81969489 81969652 -60301792 + L1MC1 LINE L1 6161 6326 -7 446 258 30 30 chr9 81969650 81969817 -60301627 + L1MB5 LINE L1 5547 5713 -2072 * 2164 153 22 8 chr9 81969817 81970176 -60301268 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr9 81970220 81970244 -60301200 + AT_rich Low_complexity Low_complexity 1 24 0 9526 48 0 0 chr9 81971191 81972372 -60299072 + L1P2 LINE L1 1921 3101 -3045 11756 43 5 0 chr9 81972481 81974012 -60297432 + L1P2 LINE L1 3961 5496 -659 310 299 10 0 chr9 81974201 81974298 -60297146 + L1MB5 LINE L1 5661 5758 -416 1283 228 62 25 chr9 81974514 81974869 -60296575 + L1MB5 LINE L1 5807 6174 0 2130 115 3 3 chr9 81975140 81975428 -60296016 - AluSq SINE Alu -25 288 1 180 0 0 0 chr9 81975441 81975461 -60295983 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2311 48 0 4 chr9 81975465 81975736 -60295708 - AluY SINE Alu -35 276 7 578 278 136 23 chr9 81975990 81976343 -60295101 - L2 LINE L2 -1 3312 2920 417 220 28 37 chr9 81976748 81976857 -60294587 - Charlie8 DNA MER1_type -2291 126 19 211 208 21 0 chr9 81977007 81977055 -60294389 - L2 LINE L2 -23 3290 3242 312 163 47 58 chr9 81977103 81977189 -60294255 + MIR SINE MIR 40 124 -84 613 165 0 0 chr9 81977540 81977637 -60293807 + MER45A DNA AcHobo 73 169 -9 361 191 48 30 chr9 81977821 81977989 -60293455 + (TA)n Simple_repeat Simple_repeat 1 171 0 232 219 66 7 chr9 81978019 81978156 -60293288 + (TA)n Simple_repeat Simple_repeat 1 145 0 229 202 58 46 chr9 81978191 81978364 -60293080 + (TATATG)n Simple_repeat Simple_repeat 5 179 0 716 61 0 84 chr9 81978389 81978659 -60292785 + (CAGC)n Simple_repeat Simple_repeat 1 247 0 736 78 0 74 chr9 81978672 81978994 -60292450 + (CAGC)n Simple_repeat Simple_repeat 1 298 0 684 62 0 77 chr9 81979037 81979232 -60292212 + (CAGC)n Simple_repeat Simple_repeat 1 180 0 800 72 0 70 chr9 81979244 81979810 -60291634 + (CAGC)n Simple_repeat Simple_repeat 1 526 0 842 70 0 59 chr9 81979825 81980197 -60291247 + (CAGC)n Simple_repeat Simple_repeat 4 351 0 551 89 0 72 chr9 81980408 81980588 -60290856 + (GCTG)n Simple_repeat Simple_repeat 4 170 0 711 74 0 63 chr9 81980602 81980791 -60290653 + (GCTG)n Simple_repeat Simple_repeat 2 178 0 842 71 0 56 chr9 81980826 81981150 -60290294 + (GCTG)n Simple_repeat Simple_repeat 1 305 0 790 60 0 72 chr9 81981168 81981740 -60289704 + (GCTG)n Simple_repeat Simple_repeat 1 530 0 766 64 0 71 chr9 81981771 81983451 -60287993 + (GCTG)n Simple_repeat Simple_repeat 1 1561 0 488 86 0 66 chr9 81983482 81983633 -60287811 + (GCTG)n Simple_repeat Simple_repeat 2 142 0 778 35 0 96 chr9 81983644 81983843 -60287601 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 260 62 0 62 chr9 81983863 81983927 -60287517 + (GCTG)n Simple_repeat Simple_repeat 3 62 0 286 160 13 40 chr9 81984064 81984139 -60287305 + (CA)n Simple_repeat Simple_repeat 2 74 0 2561 228 55 30 chr9 81984162 81985072 -60286372 - L1M4 LINE L1 -2373 3773 2841 1847 179 0 19 chr9 81985097 81985415 -60286029 - AluJb SINE Alu 0 312 1 1056 191 29 14 chr9 81985428 81985637 -60285807 - AluJb SINE Alu -11 301 90 300 234 0 16 chr9 81985637 81985701 -60285743 - LTR3b LTR ERVK 0 500 438 * 3322 124 14 6 chr9 81985683 81986175 -60285269 - LTR3b LTR ERVK -4 496 1 551 183 11 0 chr9 81986175 81986268 -60285176 - AluJb SINE Alu -217 95 2 1197 245 18 50 chr9 81986269 81986669 -60284775 - L1M4 LINE L1 -3296 2850 2464 2792 227 65 33 chr9 81986736 81988401 -60283043 + L1ME1 LINE L1 4448 6162 -4 700 266 91 67 chr9 81988414 81988996 -60282448 + HAL1 LINE L1 1911 2506 -1 2147 353 40 20 chr9 81990724 81992007 -60279437 - HERV16 LTR ERVL -2092 3672 2364 686 264 0 0 chr9 81992054 81992217 -60279227 - HERV16 LTR ERVL -4573 423 261 642 303 40 86 chr9 81992291 81992746 -60278698 + MLT1F LTR MaLR 3 436 -106 1025 225 25 18 chr9 81992842 81993122 -60278322 + L1MB8 LINE L1 5892 6173 -5 772 267 80 18 chr9 81993144 81993445 -60277999 + L1MC2 LINE L1 3 287 -5758 333 225 0 6 chr9 81993447 81993524 -60277920 - L1MCb LINE L1 -5771 274 215 1346 203 20 4 chr9 81993524 81993775 -60277669 - MLT1A1 LTR MaLR 0 365 111 997 153 17 0 chr9 81993825 81994002 -60277442 + L1MB1 LINE L1 5986 6165 -3 632 251 33 43 chr9 81994209 81994425 -60277019 + L1MC2 LINE L1 275 675 -5588 * 4262 213 123 33 chr9 81994421 81995073 -60276371 + L1MC2 LINE L1 523 1115 -5449 3698 62 0 0 chr9 81995073 81995537 -60275907 + L1PA7 LINE L1 5687 6150 -4 4262 213 123 33 chr9 81995537 81996791 -60274653 + L1MC2 LINE L1 1115 2604 -3960 4429 234 40 56 chr9 81996796 81997234 -60274210 + L1MC2 LINE L1 2662 3105 -3459 2183 96 0 0 chr9 81997234 81997539 -60273905 - AluSg1 SINE Alu 0 305 1 4429 234 40 56 chr9 81997539 81998776 -60272668 + L1MC2 LINE L1 3105 4312 -2252 1402 241 21 16 chr9 81998780 81999204 -60272240 + L1MC2 LINE L1 5055 5480 -1084 2530 78 131 5 chr9 81999209 81999607 -60271837 + LTR7 LTR ERV1 1 448 -2 19582 179 81 41 chr9 81999609 82004559 -60266885 + HERVH LTR ERV1 1 5149 -2564 1399 118 17 38 chr9 82004539 82004776 -60266668 + HERVH LTR ERV1 5588 5819 -1894 * 2397 103 45 13 chr9 82004774 82005154 -60266290 + HERVH LTR ERV1 7322 7713 0 2241 100 127 34 chr9 82005154 82005564 -60265880 + LTR7 LTR ERV1 1 448 -2 4812 198 46 3 chr9 82005569 82006792 -60264652 + L1MC2 LINE L1 5484 6754 -8 23 0 0 0 chr9 82007064 82007087 -60264357 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr9 82007883 82007905 -60263539 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 210 37 0 0 chr9 82007904 82007931 -60263513 + (GA)n Simple_repeat Simple_repeat 1 27 0 563 278 102 45 chr9 82009513 82009779 -60261665 + L2 LINE L2 3033 3313 0 186 379 128 8 chr9 82009784 82010019 -60261425 + L3 LINE CR1 1309 1571 -6 209 267 147 0 chr9 82010032 82010107 -60261337 + L2 LINE L2 3190 3275 -38 462 209 129 30 chr9 82010170 82010371 -60261073 - LTR50 LTR ERVL 0 795 575 591 253 97 0 chr9 82010485 82010671 -60260773 - LTR50 LTR ERVL -591 204 1 554 327 79 39 chr9 82012216 82012546 -60258898 + MLT1J2 LTR MaLR 1 343 -107 1316 225 39 15 chr9 82012896 82013229 -60258215 - MER58B DNA MER1_type 0 341 1 2074 214 28 77 chr9 82013703 82014277 -60257167 + MLT2B3 LTR ERVL 9 554 0 623 67 11 0 chr9 82014502 82014591 -60256853 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 737 236 17 6 chr9 82014591 82014769 -60256675 - MER58A DNA MER1_type -4 220 41 285 353 94 68 chr9 82014918 82015184 -60256260 + L2 LINE L2 2992 3264 -8 22 0 0 0 chr9 82016022 82016044 -60255400 + AT_rich Low_complexity Low_complexity 1 22 0 3468 200 45 28 chr9 82016247 82016380 -60255064 + L1MB8 LINE L1 5339 5468 -710 324 0 0 0 chr9 82016380 82016416 -60255028 + (TAA)n Simple_repeat Simple_repeat 2 37 0 3468 200 45 28 chr9 82016416 82017002 -60254442 + L1MB8 LINE L1 5468 6076 -102 2606 55 0 0 chr9 82017002 82017309 -60254135 - AluY SINE Alu -4 307 1 3468 200 45 28 chr9 82017309 82017414 -60254030 + L1MB8 LINE L1 6076 6178 0 347 297 40 10 chr9 82018364 82018465 -60252979 + MIR3 SINE MIR 87 190 -18 194 103 0 26 chr9 82018957 82018996 -60252448 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 37 76 0 0 chr9 82018996 82019075 -60252369 + AT_rich Low_complexity Low_complexity 1 79 0 1647 237 127 21 chr9 82020425 82020942 -60250502 - MLT1E2 LTR MaLR -10 644 92 1000 200 97 74 chr9 82022174 82022564 -60248880 + MER57A LTR ERV1 1 399 -4 286 303 28 18 chr9 82023704 82023813 -60247631 + GA-rich Low_complexity Low_complexity 4 113 0 409 298 11 39 chr9 82024662 82024843 -60246601 - MER117 DNA MER1_type -17 180 5 21 0 0 0 chr9 82025646 82025667 -60245777 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 82026049 82026073 -60245371 + AT_rich Low_complexity Low_complexity 1 24 0 240 200 0 0 chr9 82026090 82026140 -60245304 + (TA)n Simple_repeat Simple_repeat 1 50 0 306 270 0 0 chr9 82026149 82026238 -60245206 - L1MC4 LINE L1 -1339 6703 6615 212 364 45 18 chr9 82026752 82026862 -60244582 - L2 LINE L2 -197 3075 2963 308 332 135 5 chr9 82027090 82027283 -60244161 + MIR SINE MIR 43 260 -2 192 346 37 22 chr9 82027339 82027475 -60243969 + MIR SINE MIR 82 219 -43 183 304 54 22 chr9 82027565 82027657 -60243787 - MIR SINE MIR 0 262 168 547 302 35 6 chr9 82028434 82028606 -60242838 - MIR SINE MIR -66 196 20 648 266 95 27 chr9 82028712 82028975 -60242469 + L2 LINE L2 1928 2208 -1106 1020 222 39 98 chr9 82028978 82029419 -60242025 - L1MA9 LINE L1 -25 6287 5873 1000 284 121 11 chr9 82029424 82029878 -60241566 + L2 LINE L2 2216 2719 -595 890 275 86 65 chr9 82029890 82030355 -60241089 + L2 LINE L2 2829 3303 -10 29 28 0 0 chr9 82032485 82032521 -60238923 + AT_rich Low_complexity Low_complexity 1 36 0 270 325 52 18 chr9 82033161 82033310 -60238134 + MIR SINE MIR 40 195 -64 2560 235 75 30 chr9 82034846 82036298 -60235146 + L1ME1 LINE L1 4611 6148 -18 625 247 0 19 chr9 82038765 82038927 -60232517 + MER104 DNA Tc2 1 159 -21 311 261 36 18 chr9 82038998 82039109 -60232335 - MIR SINE MIR -148 114 2 957 216 33 5 chr9 82039470 82039683 -60231761 - MER20 DNA MER1_type 0 219 1 188 182 0 0 chr9 82040408 82040441 -60231003 - L2 LINE L2 0 3313 3281 2490 61 3 3 chr9 82040684 82040995 -60230449 + AluY SINE Alu 1 311 0 319 244 7 104 chr9 82041047 82041182 -60230262 - MIR SINE MIR -70 192 71 502 365 67 47 chr9 82042334 82043122 -60228322 + L2 LINE L2 2127 2930 -384 789 277 137 24 chr9 82043440 82043931 -60227513 + Tigger8 DNA MER2_type 102 647 -19 227 233 35 35 chr9 82043960 82044046 -60227398 + L1MC/D LINE L1 5725 5810 -523 213 180 33 0 chr9 82044146 82044207 -60227237 + (TA)n Simple_repeat Simple_repeat 1 63 0 1530 312 51 16 chr9 82044591 82045082 -60226362 + MLT2E LTR ERVL 3 510 -118 277 315 45 36 chr9 82045453 82045564 -60225880 - MER5A DNA MER1_type -35 154 43 2178 62 0 11 chr9 82046229 82046501 -60224943 + AluY SINE Alu 37 305 -6 1983 211 36 8 chr9 82046514 82046928 -60224516 + MLT2C2 LTR ERVL 1 479 -41 775 212 252 61 chr9 82047013 82047422 -60224022 + MLT1G1 LTR MaLR 56 536 -6 25 0 0 0 chr9 82047555 82047580 -60223864 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr9 82049435 82049464 -60221980 + AT_rich Low_complexity Low_complexity 1 29 0 205 156 62 16 chr9 82049847 82049911 -60221533 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 1089 240 67 41 chr9 82050061 82050403 -60221041 - MER87 LTR ERV1 -23 518 168 20448 161 35 10 chr9 82050649 82052116 -60219328 - L1MA2 LINE L1 0 7723 6295 2458 115 27 3 chr9 82052116 82052482 -60218962 + THE1C LTR MaLR 1 375 0 8391 126 77 44 chr9 82052484 82054014 -60217430 + THE1C-int LTR MaLR 2 1580 0 2436 116 16 8 chr9 82054014 82054384 -60217060 + THE1C LTR MaLR 1 373 -2 20448 161 35 10 chr9 82054384 82057678 -60213766 - L1MA2 LINE L1 -1428 6295 2671 342 0 0 0 chr9 82057678 82057716 -60213728 + (TTG)n Simple_repeat Simple_repeat 2 39 0 20448 161 35 10 chr9 82057716 82060442 -60211002 - L1MA2 LINE L1 -5052 2671 16 2101 134 0 3 chr9 82060448 82060800 -60210644 - AluSq SINE Alu 0 351 1 28 0 0 0 chr9 82061519 82061547 -60209897 + AT_rich Low_complexity Low_complexity 1 28 0 220 204 0 0 chr9 82064870 82064914 -60206530 + A-rich Low_complexity Low_complexity 5 48 0 436 337 25 18 chr9 82068522 82068685 -60202759 - MIR SINE MIR -97 165 2 2114 169 8 20 chr9 82071013 82071404 -60200040 - MLT1B LTR MaLR -2 388 3 203 216 20 20 chr9 82072563 82072614 -60198830 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 304 260 210 14 chr9 82072651 82072870 -60198574 - L1M4c LINE L1 -5029 1355 1094 1335 220 107 75 chr9 82075471 82076072 -60195372 + MLT1E3 LTR MaLR 5 624 0 716 152 8 0 chr9 82077010 82077142 -60194302 - L1MB7 LINE L1 -12 6172 6040 297 0 0 0 chr9 82078022 82078055 -60193389 + (TG)n Simple_repeat Simple_repeat 1 33 0 3661 201 56 8 chr9 82078551 82079816 -60191628 - L1ME1 LINE L1 -8 6158 4830 186 289 53 0 chr9 82080708 82080784 -60190660 - MIR SINE MIR -43 219 140 1678 62 5 0 chr9 82081266 82081475 -60189969 + AluY SINE Alu 102 311 0 271 265 0 0 chr9 82081668 82081736 -60189708 - MIR SINE MIR -114 148 81 17384 85 9 2 chr9 82082270 82085496 -60185948 + L1PA7 LINE L1 2926 6154 0 197 254 63 0 chr9 82085522 82085585 -60185859 + L2 LINE L2 3243 3309 -4 233 196 105 53 chr9 82086129 82086262 -60185182 - Charlie7 DNA MER1_type -1 2611 2472 354 265 107 39 chr9 82086303 82086450 -60184994 - Charlie7 DNA MER1_type -1988 624 488 459 0 0 0 chr9 82086450 82086501 -60184943 + (TG)n Simple_repeat Simple_repeat 2 52 0 2308 50 0 0 chr9 82086508 82086788 -60184656 - L1PA7 LINE L1 -19 6135 5856 354 265 107 39 chr9 82086788 82086866 -60184578 - Charlie7 DNA MER1_type -2129 483 375 752 267 69 12 chr9 82086913 82087160 -60184284 - Charlie7 DNA MER1_type -2351 261 1 14732 142 21 72 chr9 82087498 82090486 -60180958 - L1P LINE L1 -3302 2844 7 948 261 11 42 chr9 82091674 82091938 -60179506 - MIR SINE MIR 0 262 7 1955 133 3 16 chr9 82092057 82092365 -60179079 - AluSx SINE Alu -8 304 1 1714 155 19 47 chr9 82093015 82093332 -60178112 + AluSx SINE Alu 1 308 -4 2291 84 3 0 chr9 82093672 82093957 -60177487 - AluY SINE Alu -25 286 1 2152 113 3 13 chr9 82094370 82094672 -60176772 + AluSx SINE Alu 1 299 -13 210 237 21 93 chr9 82094693 82094790 -60176654 + MIR SINE MIR 167 256 -6 420 185 25 0 chr9 82095983 82096064 -60175380 - AluS SINE Alu -229 83 1 272 27 27 0 chr9 82096303 82096340 -60175104 + (TA)n Simple_repeat Simple_repeat 1 38 0 927 254 129 77 chr9 82096959 82097456 -60173988 + LTR33A LTR ERVL 1 523 0 924 340 36 45 chr9 82098110 82098998 -60172446 + ERVL LTR ERVL 822 1701 -4063 748 299 92 31 chr9 82099525 82099969 -60171475 + LTR33A LTR ERVL 7 477 -46 213 295 167 40 chr9 82100195 82100422 -60171022 + L2 LINE L2 2828 3083 -189 1833 186 87 32 chr9 82102095 82102569 -60168875 - MLT1D LTR MaLR 0 505 6 318 295 0 38 chr9 82102865 82102970 -60168474 + MIR SINE MIR 85 185 -77 1420 220 3 18 chr9 82103041 82103327 -60168117 + AluJo SINE Alu 11 292 -20 975 288 38 23 chr9 82103803 82104202 -60167242 + MLT1I LTR MaLR 1 405 -4 23 0 0 0 chr9 82104454 82104477 -60166967 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr9 82105287 82105311 -60166133 + (T)n Simple_repeat Simple_repeat 1 24 0 1678 178 0 38 chr9 82105644 82105973 -60165471 - AluJo SINE Alu 0 318 1 2205 110 0 3 chr9 82105975 82106275 -60165169 - AluSq SINE Alu -14 299 1 609 287 106 19 chr9 82106602 82106867 -60164577 + MLT1G LTR MaLR 1 288 -302 231 243 27 14 chr9 82107076 82107150 -60164294 + (TATG)n Simple_repeat Simple_repeat 4 78 0 663 190 50 67 chr9 82107224 82107301 -60164143 - MER45A DNA AcHobo -1405 176 99 2835 10 0 0 chr9 82107301 82107609 -60163835 + AluYa5 SINE Alu 1 308 -3 663 190 50 67 chr9 82107609 82107710 -60163734 - MER45A DNA AcHobo -1482 99 1 22 35 0 0 chr9 82108116 82108145 -60163299 + AT_rich Low_complexity Low_complexity 1 29 0 2327 82 0 0 chr9 82108425 82108716 -60162728 + AluY SINE Alu 1 291 -20 339 267 44 0 chr9 82109757 82109847 -60161597 - MIR SINE MIR -132 130 37 180 208 111 56 chr9 82110427 82110499 -60160945 - L3 LINE CR1 -963 614 539 193 268 82 62 chr9 82111523 82111620 -60159824 - L2 LINE L2 -232 3040 2942 418 245 44 28 chr9 82112057 82112208 -60159236 - MLT1H1 LTR MaLR -3 552 420 2519 59 0 10 chr9 82112398 82112703 -60158741 - AluY SINE Alu -9 302 1 1709 180 24 10 chr9 82112770 82113059 -60158385 + AluJo SINE Alu 1 293 -19 312 291 108 78 chr9 82113113 82113371 -60158073 - LTR16A1 LTR ERVL -190 267 2 1263 349 29 20 chr9 82113566 82114420 -60157024 - HERVL LTR ERVL -1201 4453 3592 402 342 7 7 chr9 82114894 82115049 -60156395 - HERVL LTR ERVL -1900 3096 2942 881 309 92 23 chr9 82115468 82115980 -60155464 - HERVL LTR ERVL -2594 2402 1856 25 0 0 0 chr9 82115999 82116024 -60155420 + AT_rich Low_complexity Low_complexity 1 25 0 2125 102 0 0 chr9 82116024 82116298 -60155146 + AluSg SINE Alu 1 274 -36 297 0 0 0 chr9 82116300 82116333 -60155111 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr9 82116332 82116361 -60155083 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 696 155 0 0 chr9 82116429 82116532 -60154912 - FLAM_A SINE Alu -22 120 18 479 304 21 5 chr9 82116547 82116738 -60154706 - HERVL LTR ERVL -3205 1791 1598 1808 310 75 36 chr9 82116818 82117024 -60154420 - HERVL LTR ERVL -3601 1395 1198 2209 155 27 50 chr9 82117024 82117468 -60153976 - Tigger2a DNA MER2_type 0 434 1 1808 310 75 36 chr9 82117468 82118415 -60153029 - HERVL LTR ERVL -3798 1198 198 896 273 58 53 chr9 82118588 82118999 -60152445 - LTR16A1 LTR ERVL 0 457 45 379 296 11 0 chr9 82119039 82119127 -60152317 - MER5A DNA MER1_type -92 97 9 294 304 56 16 chr9 82119201 82119326 -60152118 - LTR16A1 LTR ERVL -66 391 262 386 188 75 0 chr9 82119756 82119836 -60151608 + LTR54 LTR ERV1 1 86 -424 463 244 188 34 chr9 82119849 82120026 -60151418 + MER57A LTR ERV1 132 355 -48 195 69 0 0 chr9 82120026 82120055 -60151389 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 463 244 188 34 chr9 82120055 82120111 -60151333 + MER57A LTR ERV1 355 401 -2 613 300 28 28 chr9 82120117 82120364 -60151080 + MER57A-int LTR ERV1 3 249 -7288 207 0 0 0 chr9 82120594 82120617 -60150827 + (T)n Simple_repeat Simple_repeat 1 23 0 3599 144 81 23 chr9 82121473 82121643 -60149801 - L1MA9 LINE L1 -281 6031 5872 2309 120 17 3 chr9 82121643 82121992 -60149452 + THE1A LTR MaLR 1 354 -1 3599 144 81 23 chr9 82121992 82123038 -60148406 - L1MA9 LINE L1 -440 5872 4738 322 227 188 25 chr9 82123092 82123374 -60148070 + HAL1 LINE L1 1978 2305 -202 472 284 79 38 chr9 82123376 82123668 -60147776 - MLT1H LTR MaLR -4 545 242 525 225 21 21 chr9 82123736 82123878 -60147566 - MLT1H LTR MaLR -396 153 12 258 176 0 0 chr9 82123938 82123989 -60147455 + (TA)n Simple_repeat Simple_repeat 2 52 0 2206 112 0 0 chr9 82124737 82125024 -60146420 + AluSg1 SINE Alu 1 287 -22 229 338 28 0 chr9 82125693 82125764 -60145680 + L2 LINE L2 3191 3263 -9 198 103 0 0 chr9 82126785 82126814 -60144630 + (A)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr9 82127257 82127277 -60144167 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 684 259 10 20 chr9 82127491 82127692 -60143752 - AluJo SINE Alu -6 306 108 190 310 69 0 chr9 82128402 82128489 -60142955 + L3 LINE CR1 1358 1450 -127 268 375 21 0 chr9 82129752 82129848 -60141596 - L2 LINE L2 -3 3269 3172 2197 125 0 0 chr9 82129979 82130275 -60141169 + AluSq SINE Alu 1 296 -17 256 271 102 28 chr9 82130590 82130767 -60140677 - MER34 LTR ERV1 0 542 353 389 159 19 0 chr9 82131027 82131118 -60140326 - MER34C LTR ERV1 -449 100 1 490 314 17 23 chr9 82131279 82131451 -60139993 - MER5B DNA MER1_type -2 176 6 233 321 18 24 chr9 82132319 82132484 -60138960 + GA-rich Low_complexity Low_complexity 4 167 0 252 313 8 30 chr9 82132528 82132659 -60138785 + GA-rich Low_complexity Low_complexity 1 128 0 474 292 142 9 chr9 82132901 82133120 -60138324 + MER34C LTR ERV1 158 405 -180 261 301 6 45 chr9 82133526 82133682 -60137762 + LOR1-int LTR ERV1 2340 2489 -2382 305 314 161 15 chr9 82133947 82134084 -60137360 - L2 LINE L2 0 3272 3116 464 261 89 52 chr9 82134322 82134847 -60136597 + LOR1-int LTR ERV1 1538 3172 -1708 875 212 153 81 chr9 82134851 82135454 -60135990 + LOR1-int LTR ERV1 3966 4611 -1720 1521 213 27 17 chr9 82136875 82137171 -60134273 + AluJb SINE Alu 1 299 -13 23 78 0 0 chr9 82137396 82137447 -60133997 + AT_rich Low_complexity Low_complexity 1 51 0 198 234 75 65 chr9 82140146 82140253 -60131191 + L2 LINE L2 2590 2697 -617 1818 171 4 0 chr9 82141440 82141752 -60129692 + AluJb SINE Alu 1 313 0 2329 92 7 3 chr9 82142765 82143071 -60128373 + AluSq SINE Alu 1 307 -6 623 197 98 45 chr9 82143071 82143258 -60128186 + MIR SINE MIR 60 256 -6 382 229 10 42 chr9 82143774 82143870 -60127574 - MER57-int LTR ERV1 -1776 5761 5669 7357 186 156 26 chr9 82143870 82144072 -60127372 - MER52A LTR ERV1 0 1755 1581 2395 110 19 16 chr9 82144072 82144435 -60127009 + THE1B LTR MaLR 1 364 0 7357 186 156 26 chr9 82144435 82145785 -60125659 - MER52A LTR ERV1 -174 1581 1 1339 247 20 47 chr9 82145785 82146230 -60125214 - MER57-int LTR ERV1 -1865 5672 5240 309 346 117 17 chr9 82146365 82146596 -60124848 + L1MEc LINE L1 1422 1675 -4721 563 276 58 68 chr9 82146781 82147200 -60124244 + L1MEc LINE L1 2909 3337 -2878 347 330 38 0 chr9 82147513 82147619 -60123825 + L2 LINE L2 3203 3312 -1 2312 106 0 0 chr9 82148670 82148971 -60122473 + AluSx SINE Alu 1 301 -11 380 356 41 16 chr9 82150223 82150417 -60121027 - MIR3 SINE MIR -8 200 2 221 345 0 0 chr9 82150625 82150711 -60120733 - MIR SINE MIR -64 144 65 327 305 26 66 chr9 82150733 82150884 -60120560 + HAL1 LINE L1 1776 1920 -587 330 103 0 17 chr9 82150925 82150983 -60120461 - L1MA9 LINE L1 -2 6310 6254 1721 187 114 34 chr9 82152242 82152708 -60118736 - MLT1D LTR MaLR 0 505 3 21 36 0 0 chr9 82153027 82153055 -60118389 + AT_rich Low_complexity Low_complexity 1 28 0 242 231 13 26 chr9 82153181 82153259 -60118185 + CT-rich Low_complexity Low_complexity 1 77 0 39 0 0 0 chr9 82153656 82153695 -60117749 + AT_rich Low_complexity Low_complexity 1 39 0 239 227 27 107 chr9 82153890 82153965 -60117479 + L2 LINE L2 3203 3271 -1 4107 187 29 52 chr9 82154672 82155891 -60115553 - L1MB7 LINE L1 -12 6172 4994 180 0 0 0 chr9 82155891 82155911 -60115533 + (TG)n Simple_repeat Simple_repeat 1 20 0 4107 187 29 52 chr9 82155911 82156543 -60114901 - L1MB7 LINE L1 -1190 4994 4349 486 248 35 0 chr9 82156936 82157049 -60114395 - L2 LINE L2 0 3313 3197 21 0 0 0 chr9 82157208 82157229 -60114215 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr9 82157643 82157670 -60113774 + AT_rich Low_complexity Low_complexity 1 27 0 209 366 61 0 chr9 82157670 82157752 -60113692 + MIR SINE MIR 65 151 -111 375 252 72 0 chr9 82158033 82158144 -60113300 - MLT1I LTR MaLR 0 409 291 295 298 43 0 chr9 82158208 82158302 -60113142 - MLT1I LTR MaLR -201 208 111 186 352 22 0 chr9 82158410 82158501 -60112943 + MIR SINE MIR 164 256 -6 280 292 31 67 chr9 82158700 82158895 -60112549 + L2 LINE L2 2716 2903 -411 310 286 51 10 chr9 82159175 82159273 -60112171 + L2 LINE L2 3180 3281 -32 287 366 25 25 chr9 82159512 82159673 -60111771 + MIR SINE MIR 32 192 -70 1689 175 50 41 chr9 82160307 82160867 -60110577 - L1ME1 LINE L1 -4 6162 5425 2144 131 0 3 chr9 82160867 82161172 -60110272 - AluSq SINE Alu -9 304 1 1689 175 50 41 chr9 82161172 82161283 -60110161 - L1ME1 LINE L1 -741 5425 5317 1718 182 0 7 chr9 82161544 82161865 -60109579 - AluJb SINE Alu 0 319 1 22 35 0 0 chr9 82162109 82162138 -60109306 + AT_rich Low_complexity Low_complexity 1 29 0 2252 158 34 14 chr9 82262267 82262772 -60008672 - L1MCa LINE L1 -5121 1305 791 1670 177 26 3 chr9 82262783 82263093 -60008351 - MER2 DNA MER2_type -27 318 2 3114 190 57 3 chr9 82263097 82263770 -60007674 - L1MCa LINE L1 -5642 784 76 2367 80 0 3 chr9 82263836 82264137 -60007307 - AluY SINE Alu -11 300 1 190 0 67 0 chr9 82264503 82264533 -60006911 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 1287 275 73 5 chr9 82264932 82265559 -60005885 - L1MCa LINE L1 -2231 4195 3490 3762 208 74 17 chr9 82265598 82267466 -60003978 - L1MCa LINE L1 -3033 3393 1422 240 111 0 0 chr9 82267467 82267503 -60003941 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 * 276 111 0 0 chr9 82267502 82267547 -60003897 + (T)n Simple_repeat Simple_repeat 1 45 0 266 0 29 0 chr9 82267655 82267689 -60003755 + (TG)n Simple_repeat Simple_repeat 2 36 0 180 399 85 7 chr9 82267746 82267899 -60003545 + MIR3 SINE MIR 33 197 -11 186 167 0 0 chr9 82268151 82268187 -60003257 + (TA)n Simple_repeat Simple_repeat 2 37 0 324 64 0 0 chr9 82268581 82268628 -60002816 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 219 298 182 41 chr9 82269275 82269396 -60002048 - L2 LINE L2 -9 3263 3126 547 204 0 18 chr9 82269742 82269855 -60001589 - AluJb SINE Alu -201 111 1 361 253 112 75 chr9 82269868 82270101 -60001343 - L1ME LINE L1 -302 5819 5560 2128 116 0 13 chr9 82270101 82270402 -60001042 - AluSx SINE Alu -15 297 1 361 253 112 75 chr9 82270402 82270568 -60000876 - L1ME LINE L1 -561 5560 5402 893 261 42 86 chr9 82270572 82271139 -60000305 - MER34 LTR ERV1 0 542 1 352 261 88 79 chr9 82271144 82271437 -60000007 - L1ME LINE L1 -747 5399 5093 434 66 0 16 chr9 82271836 82271897 -59999547 + THE1B LTR MaLR 305 364 0 527 313 76 29 chr9 82271903 82272343 -59999101 - L1ME LINE L1 -1487 4659 4190 549 105 0 0 chr9 82272344 82272420 -59999024 + Alu SINE Alu 220 295 -17 327 263 89 40 chr9 82272617 82273020 -59998424 - L1ME LINE L1 -2201 3945 3523 329 296 102 21 chr9 82273588 82273774 -59997670 + LTR16C LTR ERVL 224 424 -67 813 189 0 0 chr9 82274060 82274187 -59997257 - AluJb SINE Alu -185 127 1 563 316 68 21 chr9 82274625 82275052 -59996392 - HAL1b LINE L1 -779 569 123 1148 209 15 33 chr9 82275757 82276092 -59995352 + MER1A DNA MER1_type 187 515 -14 1336 76 53 13 chr9 82276101 82276326 -59995118 - L1MA8 LINE L1 -48 6243 6010 228 257 113 64 chr9 82276350 82276677 -59994767 - HAL1 LINE L1 -1357 1150 808 23 40 0 0 chr9 82277435 82277460 -59993984 + AT_rich Low_complexity Low_complexity 1 25 0 3739 179 65 17 chr9 82278085 82278298 -59993146 + L1MB7 LINE L1 5127 5329 -855 2234 114 3 0 chr9 82278298 82278596 -59992848 + AluSx SINE Alu 1 299 -13 3739 179 65 17 chr9 82278596 82279344 -59992100 + L1MB7 LINE L1 5329 6132 -52 31 0 0 0 chr9 82279414 82279445 -59991999 + AT_rich Low_complexity Low_complexity 1 31 0 1358 212 45 9 chr9 82279950 82280285 -59991159 - L1M2a LINE L1 -5138 2030 1684 913 328 44 17 chr9 82280295 82280700 -59990744 - L1M2a LINE L1 -5978 1190 775 2471 281 31 29 chr9 82280745 82281690 -59989754 - L1M2a LINE L1 -6220 948 2 1410 275 54 55 chr9 82281771 82282654 -59988790 - HAL1 LINE L1 -31 2476 1595 279 307 44 34 chr9 82282637 82282842 -59988602 - L1ME LINE L1 -408 5754 5548 * 439 275 0 0 chr9 82282879 82282999 -59988445 - HAL1 LINE L1 -1132 1375 1256 624 330 63 14 chr9 82283177 82283541 -59987903 + MLT1J1 LTR MaLR 65 446 0 450 340 46 35 chr9 82285148 82285430 -59986014 + L3 LINE CR1 463 747 -830 918 132 7 14 chr9 82286500 82286644 -59984800 + AluJb SINE Alu 170 312 0 970 176 67 5 chr9 82287017 82287227 -59984217 + MER58A DNA MER1_type 2 224 0 258 272 37 25 chr9 82287399 82287480 -59983964 + L2 LINE L2 3230 3311 -2 21 0 0 0 chr9 82287729 82287750 -59983694 + AT_rich Low_complexity Low_complexity 1 21 0 210 71 0 0 chr9 82287985 82288013 -59983431 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 881 104 42 0 chr9 82288077 82288221 -59983223 - L1MB3 LINE L1 -2 6181 6032 513 313 65 8 chr9 82291135 82291381 -59980063 - MIR SINE MIR -1 261 2 1156 172 62 16 chr9 82293750 82294058 -59977386 + MER33 DNA MER1_type 2 323 -1 9346 201 21 13 chr9 82294190 82298928 -59972516 + L1PBa LINE L1 6 5053 -1809 688 287 27 5 chr9 82299609 82299797 -59971647 + MIR3 SINE MIR 3 194 -14 230 353 35 17 chr9 82299987 82300103 -59971341 - MIR SINE MIR -61 147 30 241 271 169 8 chr9 82300412 82300530 -59970914 + MIR SINE MIR 48 184 -78 196 266 89 25 chr9 82301408 82301487 -59969957 + MIR3 SINE MIR 113 196 -12 2371 58 7 7 chr9 82301780 82302089 -59969355 - AluY SINE Alu -2 309 1 400 272 14 68 chr9 82302228 82302375 -59969069 + MER5B DNA MER1_type 38 176 -2 240 86 0 0 chr9 82302760 82302795 -59968649 + (T)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr9 82303271 82303293 -59968151 + (ATG)n Simple_repeat Simple_repeat 2 23 0 23 68 0 0 chr9 82303333 82303377 -59968067 + AT_rich Low_complexity Low_complexity 1 44 0 1549 157 56 3 chr9 82303392 82303697 -59967747 - L1MA4A LINE L1 -1 6302 5982 338 300 9 18 chr9 82303798 82303908 -59967536 + MER63A DNA MER1_type 102 210 0 530 326 110 27 chr9 82304091 82304610 -59966834 + MLT1K LTR MaLR 27 588 0 314 269 23 9 chr9 82304616 82304762 -59966682 + L1ME1 LINE L1 6037 6184 0 3025 113 22 2 chr9 82306239 82306683 -59964761 + MLT2A2 LTR ERVL 1 453 0 13500 68 2 8 chr9 82306697 82308493 -59962951 + HERVL LTR ERVL 3063 4847 -807 2066 229 8 2 chr9 82308667 82309178 -59962266 + L1PB1 LINE L1 2527 3040 -3106 5970 215 8 1 chr9 82309237 82310665 -59960779 - L1 LINE L1 -1736 4410 2973 5471 160 7 3 chr9 82310668 82312352 -59959092 + L1PB1 LINE L1 4456 6143 -8 2962 181 36 19 chr9 82312461 82313183 -59958261 - L1 LINE L1 -2368 3778 3045 23 33 0 0 chr9 82313183 82313213 -59958231 + AT_rich Low_complexity Low_complexity 1 30 0 5308 167 10 11 chr9 82313224 82314974 -59956470 - L1PB1 LINE L1 -23 6128 4380 873 246 19 26 chr9 82315227 82315491 -59955953 - MER34 LTR ERV1 -280 262 1 273 283 79 46 chr9 82315644 82315775 -59955669 + MIR SINE MIR 16 147 -61 24 0 0 0 chr9 82316666 82316690 -59954754 + AT_rich Low_complexity Low_complexity 1 24 0 2009 147 0 17 chr9 82316710 82317065 -59954379 - L1PB1 LINE L1 -21 6130 5782 809 134 0 14 chr9 82317128 82317270 -59954174 - L1PB1 LINE L1 -358 5793 5654 1932 133 0 0 chr9 82317271 82317542 -59953902 - AluSx SINE Alu -14 298 28 24 53 0 0 chr9 82317828 82317866 -59953578 + AT_rich Low_complexity Low_complexity 1 38 0 452 56 113 0 chr9 82317866 82317937 -59953507 - L1M1 LINE L1 -807 5497 5419 * 568 178 0 47 chr9 82317925 82318054 -59953390 - L1PB1 LINE L1 -2298 3848 3726 232 301 14 14 chr9 82318480 82318623 -59952821 + (TAAA)n Simple_repeat Simple_repeat 4 146 0 1971 124 11 0 chr9 82318682 82318955 -59952489 + AluSq SINE Alu 33 308 -5 2024 158 37 34 chr9 82319006 82319552 -59951892 - MLT2A2 LTR ERVL -2 552 1 1443 161 0 5 chr9 82319578 82319801 -59951643 - AluJo SINE Alu -21 291 70 22 0 0 0 chr9 82319823 82319845 -59951599 + AT_rich Low_complexity Low_complexity 1 22 0 663 152 134 18 chr9 82320202 82320366 -59951078 - MER53 DNA DNA -6 183 1 635 211 72 7 chr9 82320627 82320779 -59950665 - MER58B DNA MER1_type 0 341 180 6558 94 6 21 chr9 82320879 82321895 -59949549 + MER11C LTR ERVK 71 1071 0 396 276 41 28 chr9 82321900 82322045 -59949399 - L2 LINE L2 -435 2879 2733 1550 295 72 77 chr9 82322240 82322896 -59948548 - L2 LINE L2 -1034 2280 1622 2152 213 21 58 chr9 82322896 82323469 -59947975 - MLT2B3 LTR ERVL -2 552 1 1550 295 72 77 chr9 82323469 82324183 -59947261 - L2 LINE L2 -1692 1622 917 22 56 0 0 chr9 82324189 82324225 -59947219 + AT_rich Low_complexity Low_complexity 1 36 0 221 234 0 0 chr9 82324833 82324880 -59946564 + (CA)n Simple_repeat Simple_repeat 1 47 0 468 0 0 0 chr9 82325562 82325614 -59945830 + (CA)n Simple_repeat Simple_repeat 2 53 0 2141 201 51 4 chr9 82327052 82327610 -59943834 - MLT1E2 LTR MaLR 0 626 60 1046 90 13 1 chr9 82327845 82328024 -59943420 + L1PA16 LINE L1 5549 5740 -426 1047 98 6 24 chr9 82328055 82328219 -59943225 + L1PA16 LINE L1 6004 6164 -2 219 313 50 15 chr9 82328483 82328621 -59942823 + MIR3 SINE MIR 14 158 -66 636 269 18 85 chr9 82328650 82328992 -59942452 + MER102b DNA MER1_type 4 322 -19 199 269 130 9 chr9 82328997 82329105 -59942339 + MIR3 SINE MIR 82 202 -6 221 159 0 23 chr9 82330665 82330709 -59940735 + (TGGG)n Simple_repeat Simple_repeat 3 45 0 21 0 0 0 chr9 82331313 82331334 -59940110 + AT_rich Low_complexity Low_complexity 1 21 0 204 305 25 59 chr9 82332647 82332765 -59938679 + MIR3 SINE MIR 12 125 -83 2032 110 7 0 chr9 82333532 82333813 -59937631 - AluSg1 SINE Alu -14 295 13 2659 136 43 4 chr9 82333813 82334276 -59937168 - L1PA14 LINE L1 -3 6874 6394 1295 113 0 5 chr9 82334292 82334487 -59936957 - L1PB1 LINE L1 -7 6144 5951 1426 108 0 0 chr9 82334487 82334691 -59936753 - L1PA14 LINE L1 -465 6412 6209 1939 146 6 38 chr9 82334691 82335006 -59936438 - AluSx SINE Alu -7 305 1 8288 174 27 28 chr9 82335006 82336835 -59934609 - L1PA14 LINE L1 -816 6046 4220 2780 136 50 17 chr9 82336828 82337776 -59933668 - L1PA14 LINE L1 -5100 1763 636 * 1096 151 5 0 chr9 82337778 82337977 -59933467 - L1PA14 LINE L1 -6663 200 1 499 141 16 16 chr9 82337987 82338108 -59933336 - L1P LINE L1 -2958 3904 3784 231 281 55 73 chr9 82338180 82338290 -59933154 + L2 LINE L2 1932 2040 -1274 854 189 11 65 chr9 82338290 82338475 -59932969 - FAM SINE Alu 0 175 1 231 281 55 73 chr9 82338475 82338528 -59932916 + L2 LINE L2 2040 2092 -1222 205 289 40 0 chr9 82338683 82338759 -59932685 + L2 LINE L2 2436 2514 -800 1820 222 28 6 chr9 82339125 82339594 -59931850 - MER110 LTR ERV1 -12 479 1 447 338 42 7 chr9 82339766 82339908 -59931536 + L2 LINE L2 3125 3271 -1 909 210 5 37 chr9 82341482 82341696 -59929748 - MER20 DNA MER1_type -12 207 1 744 298 135 36 chr9 82342172 82342661 -59928783 + L2 LINE L2 2779 3313 0 2277 71 11 0 chr9 82342733 82343016 -59928428 + AluY SINE Alu 1 286 -25 192 40 0 0 chr9 82343036 82343061 -59928383 + (TA)n Simple_repeat Simple_repeat 1 25 0 191 262 49 90 chr9 82343596 82343718 -59927726 + MIR SINE MIR 112 228 -34 2501 53 0 28 chr9 82346071 82346389 -59925055 - AluY SINE Alu -2 309 1 389 325 126 5 chr9 82346493 82346684 -59924760 + MIR SINE MIR 48 261 -1 26 50 0 0 chr9 82347643 82347683 -59923761 + AT_rich Low_complexity Low_complexity 1 40 0 1188 212 76 93 chr9 82347765 82347796 -59923648 + MER34B LTR ERV1 8 38 -527 2098 105 3 41 chr9 82347796 82348111 -59923333 - AluSx SINE Alu -9 303 1 1188 212 76 93 chr9 82348111 82348646 -59922798 + MER34B LTR ERV1 38 564 -1 228 35 0 0 chr9 82348736 82348765 -59922679 + (CA)n Simple_repeat Simple_repeat 2 30 0 552 293 29 6 chr9 82348781 82348955 -59922489 - MER5B DNA MER1_type 0 178 1 33 0 0 0 chr9 82349533 82349566 -59921878 + AT_rich Low_complexity Low_complexity 1 33 0 249 329 0 0 chr9 82351636 82351712 -59919732 - MER5B DNA MER1_type -78 100 25 2448 101 41 16 chr9 82351723 82352089 -59919355 - THE1C LTR MaLR 0 375 1 330 218 236 18 chr9 82352172 82352282 -59919162 + MER5A DNA MER1_type 56 189 0 305 279 33 49 chr9 82352538 82352660 -59918784 - L1ME4a LINE L1 -16 6105 5986 1506 174 32 0 chr9 82353142 82353395 -59918049 - AluJo SINE Alu -4 308 48 488 183 0 0 chr9 82353512 82353594 -59917850 - AluS SINE Alu -231 82 1 2079 116 3 0 chr9 82354245 82354530 -59916914 + AluSg SINE Alu 2 287 -23 435 149 0 0 chr9 82355419 82355493 -59915951 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 302 289 11 0 chr9 82355608 82355698 -59915746 + MLT1K LTR MaLR 498 588 0 341 204 0 19 chr9 82356334 82356437 -59915007 + GA-rich Low_complexity Low_complexity 2 102 0 221 234 0 0 chr9 82359022 82359069 -59912375 + (CA)n Simple_repeat Simple_repeat 1 47 0 468 0 0 0 chr9 82359754 82359806 -59911638 + (CA)n Simple_repeat Simple_repeat 2 53 0 2141 201 51 4 chr9 82361244 82361802 -59909642 - MLT1E2 LTR MaLR 0 626 60 1046 90 13 1 chr9 82362037 82362216 -59909228 + L1PA16 LINE L1 5549 5740 -426 1047 98 6 24 chr9 82362247 82362411 -59909033 + L1PA16 LINE L1 6004 6164 -2 219 313 50 15 chr9 82362675 82362813 -59908631 + MIR3 SINE MIR 14 158 -66 636 269 18 85 chr9 82362842 82363184 -59908260 + MER102b DNA MER1_type 4 322 -19 199 269 130 9 chr9 82363189 82363297 -59908147 + MIR3 SINE MIR 82 202 -6 221 159 0 23 chr9 82364857 82364901 -59906543 + (TGGG)n Simple_repeat Simple_repeat 3 45 0 21 0 0 0 chr9 82365505 82365526 -59905918 + AT_rich Low_complexity Low_complexity 1 21 0 204 305 25 59 chr9 82366839 82366957 -59904487 + MIR3 SINE MIR 12 125 -83 2147 100 17 3 chr9 82367725 82368015 -59903429 - AluSc SINE Alu -15 294 1 288 261 0 0 chr9 82368043 82368112 -59903332 + MER3 DNA MER1_type 44 112 -97 237 91 0 0 chr9 82368155 82368188 -59903256 + MER3 DNA MER1_type 2592 2624 0 1569 186 116 14 chr9 82368395 82368749 -59902695 + MLT1B LTR MaLR 1 390 0 317 291 60 26 chr9 82368874 82368991 -59902453 - MIR SINE MIR -18 244 124 980 194 25 6 chr9 82369654 82369931 -59901513 - MLT1A2 LTR MaLR -12 362 5 2327 53 0 23 chr9 82370147 82370446 -59900998 - AluY SINE Alu -19 292 1 2590 53 0 0 chr9 82371899 82372200 -59899244 - AluY SINE Alu -9 302 2 460 215 17 73 chr9 82373262 82373439 -59898005 - L1MEd LINE L1 -4893 1226 1060 1541 150 196 12 chr9 82373439 82373780 -59897664 + MSTA LTR MaLR 23 426 -2 291 270 18 9 chr9 82375621 82375732 -59895712 + (CATATA)n Simple_repeat Simple_repeat 3 114 0 1272 192 63 22 chr9 82376621 82376892 -59894552 - AluJo SINE Alu -30 282 1 1714 176 34 66 chr9 82377003 82377246 -59894198 + MSTD LTR MaLR 1 227 -169 183 42 0 0 chr9 82377246 82377270 -59894174 + (TC)n Simple_repeat Simple_repeat 1 24 0 1714 176 34 66 chr9 82377270 82377435 -59894009 + MSTD LTR MaLR 227 396 0 2394 171 9 24 chr9 82377504 82377971 -59893473 - MLT1C LTR MaLR -7 460 1 792 228 73 35 chr9 82377996 82378285 -59893159 + L1MC4 LINE L1 3503 3802 -2344 1245 239 115 34 chr9 82378301 82379046 -59892398 + MER21B LTR ERV1 14 852 -11 434 244 0 23 chr9 82379056 82379187 -59892257 + L1MC4 LINE L1 3801 3928 -2218 3783 230 56 23 chr9 82379702 82380388 -59891056 + L1MC4 LINE L1 3912 4574 -1592 198 0 0 0 chr9 82380388 82380410 -59891034 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3783 230 56 23 chr9 82380410 82381872 -59889572 + L1MC4 LINE L1 4574 5771 -395 393 330 57 10 chr9 82381940 82382343 -59889101 + L1MC4a LINE L1 3613 4034 -2112 255 242 21 32 chr9 82382352 82382447 -59888997 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 1583 259 89 27 chr9 82382447 82383111 -59888333 + MER44D DNA MER2_type 1 705 0 289 280 79 28 chr9 82383131 82383345 -59888099 + L1MC4a LINE L1 4617 4841 -1305 457 327 48 32 chr9 82383819 82384259 -59887185 + L1MC4a LINE L1 5464 5910 -1898 297 0 0 0 chr9 82384349 82384382 -59887062 + (TG)n Simple_repeat Simple_repeat 1 33 0 267 237 26 0 chr9 82384485 82384561 -59886883 + A-rich Low_complexity Low_complexity 2 79 0 273 261 57 34 chr9 82384999 82385087 -59886357 - MER91C DNA MER1_type -20 120 31 21 36 0 0 chr9 82388096 82388124 -59883320 + AT_rich Low_complexity Low_complexity 1 28 0 2093 183 8 15 chr9 82388298 82388691 -59882753 - MLT1B LTR MaLR 0 390 1 447 287 57 5 chr9 82389156 82389365 -59882079 + L1MEd LINE L1 994 1213 -4992 305 274 76 38 chr9 82389387 82389544 -59881900 + L1MEd LINE L1 1219 1381 -4834 3326 157 116 15 chr9 82389544 82390259 -59881185 + LTR48 LTR ERV1 1 787 0 2017 112 58 0 chr9 82390360 82390638 -59880806 + AluSx SINE Alu 1 294 -18 284 273 18 9 chr9 82390641 82390751 -59880693 + HAL1 LINE L1 1485 1595 -912 350 280 43 59 chr9 82390846 82391032 -59880412 + L1MEd LINE L1 1630 1812 -4584 364 328 69 5 chr9 82391425 82391803 -59879641 + L1MEd LINE L1 2514 2915 -3300 2270 114 0 0 chr9 82391810 82392116 -59879328 + AluSg SINE Alu 1 306 -4 463 115 42 52 chr9 82392147 82392243 -59879201 + L1MA3 LINE L1 6210 6304 -1 589 238 7 71 chr9 82392410 82392623 -59878821 + MLT1J2 LTR MaLR 243 441 -9 373 343 34 34 chr9 82392780 82393013 -59878431 + MIR SINE MIR 10 242 -20 238 244 26 26 chr9 82393367 82393445 -59877999 + MLT1K LTR MaLR 511 588 0 22 0 0 0 chr9 82393817 82393839 -59877605 + AT_rich Low_complexity Low_complexity 1 22 0 2092 110 0 57 chr9 82395390 82395716 -59875728 - AluSq SINE Alu 0 309 1 369 361 60 32 chr9 82396093 82396309 -59875135 + MIR SINE MIR 20 241 -21 259 197 0 15 chr9 82396471 82396537 -59874907 - MLT1C LTR MaLR -241 226 162 832 180 85 9 chr9 82396539 82396713 -59874731 - MLT1C LTR MaLR -240 227 33 420 20 0 0 chr9 82396713 82396762 -59874682 + (TA)n Simple_repeat Simple_repeat 2 50 0 832 180 85 9 chr9 82396762 82396798 -59874646 - MLT1C LTR MaLR -434 33 1 1439 265 68 36 chr9 82396824 82397780 -59873664 + L1MEc LINE L1 1257 2243 -4153 350 188 12 12 chr9 82398365 82398445 -59872999 - MER116 DNA Mariner 0 80 1 387 0 0 0 chr9 82398613 82398656 -59872788 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 243 0 0 0 chr9 82398657 82398684 -59872760 + (CAGG)n Simple_repeat Simple_repeat 1 27 0 2196 89 39 0 chr9 82399360 82399642 -59871802 + AluY SINE Alu 1 293 -18 25 90 0 0 chr9 82400283 82400350 -59871094 + AT_rich Low_complexity Low_complexity 1 67 0 541 325 48 24 chr9 82400411 82400703 -59870741 + L1MEc LINE L1 102 400 -5996 501 280 67 76 chr9 82400755 82401098 -59870346 - MLT1H LTR MaLR -1 548 209 42185 38 3 1 chr9 82401324 82407479 -59863965 + L1PA3 LINE L1 6 6166 0 1673 182 38 74 chr9 82407575 82407772 -59863672 + MSTB1 LTR MaLR 1 204 -228 216 0 0 0 chr9 82407772 82407796 -59863648 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1673 182 38 74 chr9 82407796 82408043 -59863401 + MSTB1 LTR MaLR 204 429 -3 180 152 0 0 chr9 82408506 82408539 -59862905 + (TTG)n Simple_repeat Simple_repeat 3 35 0 1753 141 0 4 chr9 82408541 82408790 -59862654 - AluSx SINE Alu -27 285 38 2270 85 0 0 chr9 82410339 82410655 -59860789 - AluY SINE Alu 0 316 1 1515 183 31 24 chr9 82410664 82410954 -59860490 - AluJb SINE Alu -16 296 5 668 179 8 0 chr9 82410991 82411108 -59860336 - FLAM_C SINE Alu -25 118 1 8293 174 32 34 chr9 82411163 82412260 -59859184 + L1MB1 LINE L1 3389 4486 -1682 2137 107 0 0 chr9 82412260 82412540 -59858904 + AluSx SINE Alu 19 298 -14 8293 174 32 34 chr9 82412540 82414225 -59857219 + L1MB1 LINE L1 4486 6168 0 2486 229 38 62 chr9 82414333 82414844 -59856600 - L1M4c LINE L1 -4633 1751 1272 303 28 0 0 chr9 82414844 82414880 -59856564 + (TG)n Simple_repeat Simple_repeat 1 36 0 2486 229 38 62 chr9 82414880 82415298 -59856146 - L1M4c LINE L1 -5112 1272 845 6995 176 16 20 chr9 82415301 82416158 -59855286 - L1PB1 LINE L1 -287 5864 5004 2265 124 0 0 chr9 82416158 82416456 -59854988 + AluSx SINE Alu 1 298 -14 6995 176 16 20 chr9 82416456 82417891 -59853553 - L1PB1 LINE L1 -1147 5004 3592 1513 257 54 33 chr9 82418562 82419116 -59852328 - MER74A LTR ERVL -1 621 1 356 291 97 0 chr9 82419317 82419451 -59851993 + L2 LINE L2 3167 3313 0 393 347 51 20 chr9 82419454 82419650 -59851794 + MIR SINE MIR 54 255 -7 280 219 0 55 chr9 82420115 82420188 -59851256 - L2 LINE L2 -1018 2296 2228 2539 72 0 0 chr9 82420504 82420809 -59850635 + AluY SINE Alu 1 305 -6 1932 162 3 0 chr9 82420881 82421183 -59850261 + AluSx SINE Alu 8 310 -2 424 315 115 10 chr9 82421325 82421525 -59849919 - MIR SINE MIR -29 233 13 372 313 88 43 chr9 82421610 82422038 -59849406 + MLT1K LTR MaLR 95 580 -8 343 348 7 21 chr9 82422063 82422204 -59849240 + MIR SINE MIR 32 170 -92 436 315 0 0 chr9 82422375 82422486 -59848958 - L2 LINE L2 -4 3268 3158 464 274 107 25 chr9 82423638 82423835 -59847609 - MIR SINE MIR -48 214 2 234 0 0 0 chr9 82424437 82424463 -59846981 + (CCCTG)n Simple_repeat Simple_repeat 1 26 0 2152 132 26 0 chr9 82426687 82426991 -59844453 - AluSx SINE Alu 0 312 1 508 307 92 24 chr9 82427175 82427813 -59843631 - L1MEd LINE L1 -4879 1326 792 2243 123 0 0 chr9 82429062 82429370 -59842074 - AluSc SINE Alu -1 308 1 21 0 0 0 chr9 82430739 82430760 -59840684 + AT_rich Low_complexity Low_complexity 1 21 0 2221 123 0 3 chr9 82430800 82431102 -59840342 + AluSx SINE Alu 1 301 -11 2252 96 3 7 chr9 82431344 82431645 -59839799 - AluSx SINE Alu -10 302 3 1166 308 50 2 chr9 82432144 82432625 -59838819 + LTR33 LTR ERVL 16 519 -2 966 295 82 27 chr9 82434944 82435175 -59836269 + LTR16A LTR ERVL 18 282 -168 2371 71 0 0 chr9 82435175 82435469 -59835975 + AluY SINE Alu 5 298 -13 966 295 82 27 chr9 82435469 82435641 -59835803 + LTR16A LTR ERVL 282 443 -7 198 0 0 0 chr9 82435832 82435854 -59835590 + (TTA)n Simple_repeat Simple_repeat 2 23 0 3974 101 33 29 chr9 82435950 82436582 -59834862 + MER41B LTR ERV1 1 635 0 907 300 31 42 chr9 82436824 82437274 -59834170 - LTR16A1 LTR ERVL 0 457 13 227 352 33 0 chr9 82437888 82437979 -59833465 + MIR3 SINE MIR 70 163 -45 * 1375 317 85 31 chr9 82437978 82438977 -59832467 - L2 LINE L2 -1 3312 2256 245 236 24 79 chr9 82439022 82439149 -59832295 + MIR SINE MIR 120 239 -23 2443 82 0 0 chr9 82439208 82439514 -59831930 - AluY SINE Alu -5 306 1 2413 97 0 0 chr9 82440651 82440951 -59830493 + AluSc SINE Alu 1 300 -9 2234 51 0 93 chr9 82440952 82441285 -59830159 + AluY SINE Alu 2 303 -8 221 323 203 15 chr9 82441729 82441862 -59829582 - MER91A DNA MER1_type -27 169 12 26 64 0 0 chr9 82445029 82445076 -59826368 + AT_rich Low_complexity Low_complexity 1 47 0 2349 76 7 0 chr9 82445100 82445389 -59826055 + AluSp SINE Alu 1 291 -22 185 297 55 11 chr9 82446267 82446358 -59825086 - MIR SINE MIR -54 208 114 1935 165 0 7 chr9 82447242 82447545 -59823899 - AluJb SINE Alu -9 303 3 3163 160 31 36 chr9 82448016 82448623 -59822821 + L1MB5 LINE L1 5565 6168 -6 2694 240 69 39 chr9 82449993 82450929 -59820515 - L1ME3A LINE L1 -5 6165 5208 1861 63 119 4 chr9 82451023 82451320 -59820124 - AluY SINE Alu 0 326 1 2303 60 4 4 chr9 82451347 82451628 -59819816 - AluY SINE Alu -30 281 1 217 132 0 0 chr9 82451898 82451936 -59819508 + (T)n Simple_repeat Simple_repeat 1 38 0 205 245 20 0 chr9 82451972 82452021 -59819423 + (TA)n Simple_repeat Simple_repeat 2 51 0 1746 194 3 3 chr9 82452096 82452406 -59819038 - AluJo SINE Alu -2 310 1 209 273 0 0 chr9 82452689 82452733 -59818711 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 2345 93 0 13 chr9 82452854 82453165 -59818279 + AluY SINE Alu 1 307 -4 1100 286 119 72 chr9 82453476 82454242 -59817202 + L1MC4a LINE L1 5533 6261 -1547 2041 180 52 0 chr9 82454242 82454587 -59816857 + MLT1A1 LTR MaLR 3 365 0 1100 286 119 72 chr9 82454587 82454682 -59816762 + L1MC4a LINE L1 6261 6350 -1458 891 54 7 141 chr9 82454682 82454788 -59816656 + L1MA1 LINE L1 6174 6256 -46 1840 148 36 0 chr9 82454788 82455066 -59816378 + AluSx SINE Alu 1 288 -24 891 54 7 141 chr9 82455066 82455108 -59816336 + L1MA1 LINE L1 6256 6302 0 1100 286 119 72 chr9 82455108 82455562 -59815882 + L1MC4a LINE L1 6350 6911 -897 263 194 0 22 chr9 82455587 82455834 -59815610 + AluJo SINE Alu 1 287 -15 2659 223 76 49 chr9 82455839 82456807 -59814637 + L1MC5 LINE L1 6906 7900 -61 2208 158 40 0 chr9 82458696 82459044 -59812400 - MLT1A1 LTR MaLR 0 365 4 21 0 0 0 chr9 82459120 82459141 -59812303 + AT_rich Low_complexity Low_complexity 1 21 0 180 258 212 38 chr9 82459167 82459299 -59812145 - MIR3 SINE MIR -42 166 12 640 274 86 26 chr9 82459736 82459970 -59811474 + MIR SINE MIR 9 256 -6 2574 103 109 28 chr9 82460940 82461116 -59810328 + MSTA LTR MaLR 1 161 -267 2306 98 0 0 chr9 82461116 82461412 -59810032 + AluY SINE Alu 1 296 -15 2574 103 109 28 chr9 82461412 82461631 -59809813 + MSTA LTR MaLR 161 428 0 555 269 16 18 chr9 82461738 82461943 -59809501 - MLT1H LTR MaLR -236 173 1 188 219 110 55 chr9 82462973 82463046 -59808398 + MIR SINE MIR 31 107 -155 1132 211 55 163 chr9 82463054 82463703 -59807741 - MLT1G LTR MaLR 0 590 12 279 289 48 0 chr9 82463714 82463797 -59807647 + MIR SINE MIR 119 205 -57 184 274 137 0 chr9 82464311 82464384 -59807060 + MIR SINE MIR 47 129 -133 779 304 137 34 chr9 82464764 82465385 -59806059 + L2 LINE L2 1820 2504 -810 1545 174 61 17 chr9 82465450 82465744 -59805700 - AluJo SINE Alu -5 307 1 2444 90 0 0 chr9 82465754 82466055 -59805389 - AluSx SINE Alu -11 301 1 502 229 75 63 chr9 82466060 82466313 -59805131 - MER112 DNA MER1_type 0 256 1 250 309 49 0 chr9 82466319 82466400 -59805044 + L2 LINE L2 2646 2730 -584 413 331 22 14 chr9 82466671 82466810 -59804634 + L2 LINE L2 3133 3272 0 348 284 156 0 chr9 82466804 82466945 -59804499 + MIR SINE MIR 48 210 -52 * 592 265 27 65 chr9 82467437 82467622 -59803822 - MER5B DNA MER1_type 0 178 1 204 182 0 0 chr9 82470214 82470258 -59801186 + (TG)n Simple_repeat Simple_repeat 1 44 0 735 254 70 15 chr9 82470498 82470699 -59800745 - MIR SINE MIR -43 219 8 303 337 0 0 chr9 82470991 82471092 -59800352 + (TAG)n Simple_repeat Simple_repeat 1 101 0 340 313 15 45 chr9 82471095 82471229 -59800215 - MIR SINE MIR -16 246 117 2358 98 0 3 chr9 82471442 82471747 -59799697 - AluSc SINE Alu -5 304 1 863 200 97 63 chr9 82472047 82472299 -59799145 - MER113 DNA MER1_type? -92 429 164 865 240 16 0 chr9 82472299 82472482 -59798962 - MER5A DNA MER1_type 0 189 4 863 200 97 63 chr9 82472482 82472529 -59798915 - MER113 DNA MER1_type? -357 164 120 1883 165 3 7 chr9 82472531 82472828 -59798616 + AluJo SINE Alu 1 296 -16 2611 91 34 0 chr9 82472859 82473210 -59798234 - LTR12 LTR ERV1 0 714 352 2185 125 0 10 chr9 82473500 82473812 -59797632 - AluSc SINE Alu 0 309 1 1712 153 27 30 chr9 82473813 82474113 -59797331 - AluJb SINE Alu -13 299 1 297 188 43 0 chr9 82474255 82474324 -59797120 - MER116 DNA Mariner 0 80 9 372 317 56 30 chr9 82474333 82474601 -59796843 - HAL1b LINE L1 -979 369 95 22 35 0 0 chr9 82474828 82474857 -59796587 + AT_rich Low_complexity Low_complexity 1 29 0 4512 146 57 83 chr9 82476230 82477806 -59793638 + pTR5 LTR ERV1 741 2438 0 2277 98 0 0 chr9 82478150 82478456 -59792988 + AluY SINE Alu 1 306 -5 240 233 98 45 chr9 82479100 82479233 -59792211 + L1MEc LINE L1 2023 2162 -4234 2452 168 134 146 chr9 82479241 82479293 -59792151 + L1MC3 LINE L1 6719 6770 -1015 2224 57 0 97 chr9 82479293 82479624 -59791820 + AluY SINE Alu 13 311 0 2452 168 134 146 chr9 82479624 82479895 -59791549 + L1MC3 LINE L1 6770 7043 -742 206 32 32 0 chr9 82479895 82479926 -59791518 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 2452 168 134 146 chr9 82479926 82480002 -59791442 + L1MC3 LINE L1 7043 7118 -667 282 222 0 99 chr9 82480002 82480083 -59791361 + MLT1F1 LTR MaLR 50 122 -445 2452 168 134 146 chr9 82480083 82480113 -59791331 + L1MC3 LINE L1 7118 7147 -638 2060 115 6 45 chr9 82480113 82480281 -59791163 - AluSx SINE Alu -10 302 150 621 0 0 0 chr9 82480281 82480350 -59791094 + (TA)n Simple_repeat Simple_repeat 2 70 0 2060 115 6 45 chr9 82480350 82480495 -59790949 - AluSx SINE Alu -162 150 1 2452 168 134 146 chr9 82480495 82480849 -59790595 + L1MC3 LINE L1 7147 7572 -213 1860 164 0 3 chr9 82480849 82481141 -59790303 + AluJo SINE Alu 1 291 -21 2452 168 134 146 chr9 82481141 82481351 -59790093 + L1MC3 LINE L1 7572 7783 -2 21 0 0 0 chr9 82481360 82481381 -59790063 + AT_rich Low_complexity Low_complexity 1 21 0 1826 124 0 23 chr9 82481391 82481657 -59789787 + AluSx SINE Alu 1 260 -52 239 227 36 82 chr9 82481807 82481917 -59789527 - L1MC5 LINE L1 -50 7911 7807 225 0 0 0 chr9 82481923 82481948 -59789496 + (CA)n Simple_repeat Simple_repeat 2 26 0 1237 303 30 35 chr9 82482098 82482693 -59788751 + L1MC4a LINE L1 5319 5910 -1898 1690 85 0 0 chr9 82484225 82484436 -59787008 + AluSg/x SINE Alu 92 302 -10 1654 138 0 0 chr9 82484669 82484894 -59786550 + AluSx SINE Alu 7 231 -81 186 43 0 0 chr9 82484909 82484932 -59786512 + (A)n Simple_repeat Simple_repeat 1 23 0 2397 303 113 6 chr9 82485377 82486579 -59784865 - L2 LINE L2 -37 3276 1840 336 48 0 0 chr9 82486685 82486727 -59784717 + (CA)n Simple_repeat Simple_repeat 2 43 0 204 152 0 22 chr9 82487706 82487752 -59783692 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 2429 64 0 0 chr9 82487753 82488051 -59783393 - AluY SINE Alu -12 299 2 2172 111 69 33 chr9 82488442 82488804 -59782640 - THE1C LTR MaLR 0 375 1 447 333 60 5 chr9 82489453 82489654 -59781790 - MIR SINE MIR -30 232 21 360 264 182 20 chr9 82489881 82490029 -59781415 - MER5A DNA MER1_type -9 180 9 1785 149 7 46 chr9 82490670 82490849 -59780595 - AluSx SINE Alu -22 290 126 221 0 35 0 chr9 82490849 82490878 -59780566 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1785 149 7 46 chr9 82490878 82491000 -59780444 - AluSx SINE Alu -186 126 1 1519 211 3 3 chr9 82491002 82491296 -59780148 - AluJo SINE Alu -18 294 1 362 239 142 22 chr9 82491766 82491900 -59779544 + MLT1K LTR MaLR 82 231 -357 222 347 41 34 chr9 82492183 82492330 -59779114 - L3 LINE CR1 -1080 497 350 2500 55 3 0 chr9 82492530 82492822 -59778622 + AluSp SINE Alu 1 293 -20 454 266 217 10 chr9 82492992 82493199 -59778245 - MLT1J LTR MaLR -58 453 204 630 291 90 42 chr9 82493213 82493342 -59778102 - MLT1I LTR MaLR -14 395 274 2058 127 61 73 chr9 82493342 82493737 -59777707 + MLT1B LTR MaLR 1 390 0 630 291 90 42 chr9 82493737 82493969 -59777475 - MLT1I LTR MaLR -135 274 47 552 273 86 9 chr9 82494030 82494323 -59777121 - MLT1H1 LTR MaLR 0 555 190 268 317 0 0 chr9 82494353 82494435 -59777009 - MLT1H1 LTR MaLR -471 84 3 371 190 51 0 chr9 82494447 82494526 -59776918 - MLT1J LTR MaLR -331 180 98 192 152 0 0 chr9 82494539 82494572 -59776872 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 21 71 0 0 chr9 82494735 82494777 -59776667 + AT_rich Low_complexity Low_complexity 1 42 0 27 62 0 0 chr9 82494811 82494859 -59776585 + AT_rich Low_complexity Low_complexity 1 48 0 1213 314 251 19 chr9 82495101 82496192 -59775252 + L2 LINE L2 83 1426 -1888 2072 134 0 3 chr9 82496267 82496574 -59774870 + AluSx SINE Alu 1 306 -6 189 107 0 0 chr9 82497225 82497253 -59774191 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1849 127 35 11 chr9 82497799 82498082 -59773362 - AluSx SINE Alu -21 291 2 284 330 0 0 chr9 82498109 82498203 -59773241 + (CA)n Simple_repeat Simple_repeat 1 94 0 451 283 133 6 chr9 82499252 82499425 -59772019 + MIR SINE MIR 28 222 -40 280 345 50 7 chr9 82499933 82500072 -59771372 - L2 LINE L2 0 3313 3169 1352 293 21 12 chr9 82500310 82500730 -59770714 - LTR16B LTR ERVL 0 464 41 1000 143 0 0 chr9 82500730 82500863 -59770581 + FLAM_C SINE Alu 1 133 0 1665 161 90 61 chr9 82501145 82501484 -59769960 - MLT1B LTR MaLR 0 390 36 1982 127 3 28 chr9 82501484 82501798 -59769646 + AluSx SINE Alu 1 307 0 1665 161 90 61 chr9 82501798 82501836 -59769608 - MLT1B LTR MaLR -354 36 1 260 263 0 0 chr9 82501972 82502029 -59769415 + GA-rich Low_complexity Low_complexity 4 60 0 222 306 72 27 chr9 82503153 82503264 -59768180 + MIR SINE MIR 20 135 -73 274 154 15 15 chr9 82505421 82505486 -59765958 + GA-rich Low_complexity Low_complexity 4 68 0 210 297 129 30 chr9 82505744 82505845 -59765599 - L2 LINE L2 0 3272 3162 1790 82 0 43 chr9 82506664 82506921 -59764523 - L1PB1 LINE L1 0 6151 5906 2498 72 0 0 chr9 82508783 82509089 -59762355 - AluY SINE Alu -1 310 5 350 271 0 0 chr9 82509261 82509346 -59762098 + L2 LINE L2 3188 3272 0 220 330 170 0 chr9 82509547 82509653 -59761791 + L2 LINE L2 3145 3268 -4 2259 89 10 3 chr9 82509743 82510036 -59761408 + AluSx SINE Alu 5 299 -13 1606 220 9 12 chr9 82510036 82510368 -59761076 + MLT1A1 LTR MaLR 35 365 0 2100 104 14 0 chr9 82510450 82510753 -59760691 + AluSx SINE Alu 1 307 0 294 310 0 47 chr9 82510794 82510923 -59760521 + GA-rich Low_complexity Low_complexity 2 124 0 288 239 159 25 chr9 82511039 82511202 -59760242 + L1MEd LINE L1 3 187 -5932 23 0 0 0 chr9 82511443 82511466 -59759978 + AT_rich Low_complexity Low_complexity 1 23 0 496 176 154 0 chr9 82511616 82511707 -59759737 - MLT1J LTR MaLR -316 195 91 2250 74 14 17 chr9 82511885 82512206 -59759238 - AluY SINE Alu 0 311 1 1097 68 8 0 chr9 82512241 82512374 -59759070 + AluSg SINE Alu 1 134 -176 884 120 8 8 chr9 82512987 82513120 -59758324 - AluSq/x SINE Alu -180 133 1 859 194 56 11 chr9 82513530 82513710 -59757734 - MER5A DNA MER1_type -1 188 1 2155 125 10 0 chr9 82514329 82514625 -59756819 - AluSx SINE Alu -13 299 1 654 252 82 24 chr9 82514669 82514875 -59756569 - MIR SINE MIR -15 247 30 516 332 40 26 chr9 82514947 82515251 -59756193 - L1ME LINE L1 -322 5799 5492 258 276 103 0 chr9 82515793 82515880 -59755564 + MIR SINE MIR 81 176 -86 1846 120 35 0 chr9 82517002 82517260 -59754184 + AluJo SINE Alu 13 279 -33 2180 114 0 0 chr9 82517278 82517624 -59753820 + AluSc SINE Alu 1 346 0 350 140 0 0 chr9 82518344 82518394 -59753050 + Alu SINE Alu 1 50 -252 384 214 0 0 chr9 82518496 82518566 -59752878 + MER96B DNA MER1_type? 347 416 -1 292 233 0 0 chr9 82518619 82518679 -59752765 + MIR SINE MIR 199 258 -4 976 76 0 0 chr9 82519295 82519414 -59752030 + FRAM SINE Alu 45 163 -13 2138 116 34 0 chr9 82519978 82520272 -59751172 - AluSp SINE Alu -9 304 1 830 176 0 0 chr9 82520734 82520870 -59750574 - FAM SINE Alu -49 136 1 1894 159 3 7 chr9 82521129 82521438 -59750006 + AluJo SINE Alu 1 308 -4 2288 92 0 10 chr9 82521474 82521777 -59749667 - AluSp SINE Alu -13 300 1 1646 160 45 11 chr9 82523652 82523939 -59747505 + AluJb SINE Alu 1 297 -15 1413 121 14 0 chr9 82524236 82524443 -59747001 + AluSg/x SINE Alu 103 312 0 724 190 16 0 chr9 82524869 82524990 -59746454 + FLAM_A SINE Alu 1 123 -10 46 33 0 0 chr9 82524992 82525052 -59746392 + AT_rich Low_complexity Low_complexity 1 60 0 2392 64 0 0 chr9 82525566 82525873 -59745571 - AluY SINE Alu 0 307 1 2218 100 7 0 chr9 82526331 82526657 -59744787 - AluSp SINE Alu 0 328 1 480 284 63 46 chr9 82526675 82526914 -59744530 - MLT1J LTR MaLR -161 350 108 482 261 48 88 chr9 82527094 82527343 -59744101 - L2 LINE L2 0 3313 3075 288 0 0 0 chr9 82527799 82527831 -59743613 + (CA)n Simple_repeat Simple_repeat 2 33 0 255 300 79 24 chr9 82528049 82528173 -59743271 + MIR SINE MIR 26 158 -71 517 215 219 49 chr9 82528493 82528758 -59742686 - MER69 DNA AcHobo 0 2526 2217 459 165 118 0 chr9 82528767 82528852 -59742592 + MER69A DNA AcHobo 1 95 -82 * 2004 258 53 62 chr9 82528845 82529485 -59741959 - MER69 DNA AcHobo -493 733 100 253 339 107 24 chr9 82529758 82529926 -59741518 - L2 LINE L2 -15 3257 3076 274 320 80 0 chr9 82529972 82530072 -59741372 + MIR SINE MIR 89 196 -66 222 62 0 0 chr9 82530224 82530256 -59741188 + (A)n Simple_repeat Simple_repeat 1 32 0 672 261 30 30 chr9 82530327 82530526 -59740918 - MLT1K LTR MaLR -61 527 329 1838 154 9 25 chr9 82531335 82531653 -59739791 - L1MB5 LINE L1 -8 6166 5854 310 337 102 12 chr9 82532053 82532219 -59739225 - MIR3 SINE MIR -10 198 18 842 144 171 0 chr9 82532300 82532446 -59738998 + FRAM SINE Alu 1 171 -5 2463 60 0 17 chr9 82534132 82534434 -59737010 - AluY SINE Alu -14 297 1 432 273 63 28 chr9 82534731 82534874 -59736570 - L2 LINE L2 -3 3269 3122 2318 86 3 0 chr9 82535282 82535573 -59735871 + AluSp SINE Alu 1 292 -21 292 232 14 0 chr9 82536755 82536824 -59734620 + CT-rich Low_complexity Low_complexity 1 70 0 203 200 25 0 chr9 82537305 82537345 -59734099 - MIR SINE MIR -142 120 80 2443 77 0 3 chr9 82537478 82537790 -59733654 + AluY SINE Alu 1 311 0 195 114 0 0 chr9 82538994 82539029 -59732415 + (GA)n Simple_repeat Simple_repeat 2 36 0 206 250 45 0 chr9 82540177 82540221 -59731223 + L2 LINE L2 3010 3055 -217 445 179 0 47 chr9 82541067 82541173 -59730271 + L1ME3 LINE L1 5968 6068 -94 569 108 41 47 chr9 82541179 82541306 -59730138 - MER53 DNA DNA -4 185 2 1136 141 32 0 chr9 82541381 82541566 -59729878 + MER20 DNA MER1_type 10 200 -19 2298 114 16 48 chr9 82541849 82542225 -59729219 + THE1B LTR MaLR 1 364 0 1124 220 90 33 chr9 82542280 82542644 -59728800 + MER119 DNA MER1_type 26 503 -80 2317 104 0 25 chr9 82542644 82542961 -59728483 + AluSx SINE Alu 1 309 -3 1124 220 90 33 chr9 82542961 82543047 -59728397 + MER119 DNA MER1_type 503 583 0 499 264 155 7 chr9 82544085 82544233 -59727211 - MER5A DNA MER1_type -6 183 14 989 176 28 11 chr9 82544256 82544438 -59727006 + MER5A DNA MER1_type 3 187 -2 350 296 61 0 chr9 82544635 82544733 -59726711 + L2 LINE L2 3159 3262 -10 1194 178 321 39 chr9 82544846 82545257 -59726187 - MLT1F LTR MaLR -9 533 7 909 276 80 20 chr9 82545283 82545986 -59725458 - L2 LINE L2 -84 3229 1712 310 271 83 0 chr9 82547558 82547654 -59723790 - MLT1H LTR MaLR 0 549 446 2048 106 0 0 chr9 82547657 82547922 -59723522 - AluSg SINE Alu -17 293 29 804 221 93 37 chr9 82547932 82548226 -59723218 - MLT1H LTR MaLR -211 384 37 1175 285 59 37 chr9 82548341 82548881 -59722563 - Charlie7 DNA MER1_type -1961 651 100 203 93 37 37 chr9 82548882 82548936 -59722508 + (TTATA)n Simple_repeat Simple_repeat 1 54 0 960 173 16 26 chr9 82549070 82549261 -59722183 - MER96B DNA MER1_type? 0 417 229 3318 157 17 4 chr9 82549368 82549911 -59721533 - L1MC1 LINE L1 -16 6317 5768 267 189 0 0 chr9 82549938 82549991 -59721453 + (TA)n Simple_repeat Simple_repeat 2 54 0 1779 234 71 18 chr9 82550003 82550451 -59720993 - MLT2B1 LTR ERVL -48 472 1 810 126 16 0 chr9 82550451 82550578 -59720866 - L1MC1 LINE L1 -566 5767 5639 997 152 0 0 chr9 82550678 82550816 -59720628 - AluJb SINE Alu -174 138 1 1005 174 0 0 chr9 82550830 82550991 -59720453 + AluJb SINE Alu 143 303 -9 851 146 5 111 chr9 82551193 82551392 -59720052 + FAM SINE Alu 1 47 -2 1204 54 20 7 chr9 82551454 82551602 -59719842 + AluSp SINE Alu 1 150 -163 2092 100 7 42 chr9 82553057 82553367 -59718077 + AluSq SINE Alu 1 299 -14 1884 187 0 0 chr9 82553411 82553721 -59717723 - AluJo SINE Alu -2 310 1 304 124 91 6 chr9 82553746 82553802 -59717642 - AluJo SINE Alu -166 136 82 2244 119 0 0 chr9 82553943 82554253 -59717191 - AluSg SINE Alu 0 310 1 712 152 7 58 chr9 82554965 82555103 -59716341 - FLAM_C SINE Alu -2 131 1 218 321 0 0 chr9 82556597 82556681 -59714763 + (CCA)n Simple_repeat Simple_repeat 1 84 0 333 0 0 0 chr9 82557649 82557686 -59713758 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr9 82558478 82558499 -59712945 + (A)n Simple_repeat Simple_repeat 1 21 0 985 160 103 0 chr9 82558881 82559056 -59712388 + Tigger3(Golem) DNA MER2_type 2836 3028 -1 24 53 0 0 chr9 82559281 82559319 -59712125 + AT_rich Low_complexity Low_complexity 1 38 0 289 212 0 15 chr9 82559443 82559509 -59711935 - L2 LINE L2 -6 3307 3243 855 165 0 0 chr9 82560547 82560680 -59710764 - FLAM_C SINE Alu -10 133 1 29 28 0 0 chr9 82561712 82561748 -59709696 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr9 82562683 82562705 -59708739 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr9 82563820 82563849 -59707595 + AT_rich Low_complexity Low_complexity 1 29 0 2005 122 6 40 chr9 82564799 82565120 -59706324 - AluSx SINE Alu -2 310 1 480 203 66 88 chr9 82568413 82568595 -59702849 + MER45A DNA AcHobo 1 178 0 2316 95 0 7 chr9 82570679 82570984 -59700460 - AluSg SINE Alu -7 303 1 2111 124 0 13 chr9 82571006 82571312 -59700132 - AluSx SINE Alu -10 302 1 2001 112 0 49 chr9 82572986 82573290 -59698154 - AluSg SINE Alu -1 309 21 1276 98 0 0 chr9 82573381 82573544 -59697900 - AluSg/x SINE Alu -12 300 138 413 174 0 0 chr9 82573718 82573787 -59697657 - AluS SINE Alu -20 289 221 833 100 27 0 chr9 82573787 82573897 -59697547 - AluSq/x SINE Alu -199 113 1 2563 68 0 3 chr9 82574602 82574913 -59696531 + AluY SINE Alu 1 310 -1 627 126 0 11 chr9 82575649 82575744 -59695700 - AluSp/q SINE Alu -15 298 205 2220 93 0 10 chr9 82575745 82576034 -59695410 - AluSq SINE Alu -27 286 1 991 191 4 80 chr9 82577981 82578206 -59693238 + MER20 DNA MER1_type 11 218 -1 2258 119 0 0 chr9 82579425 82579727 -59691717 + AluSx SINE Alu 1 302 -10 180 111 0 0 chr9 82579727 82579754 -59691690 + (GGAGA)n Simple_repeat Simple_repeat 1 27 0 2251 116 7 0 chr9 82579845 82580155 -59691289 - AluSq SINE Alu -1 312 1 1404 148 0 14 chr9 82580283 82580499 -59690945 - AluJo SINE Alu -17 295 83 452 162 0 0 chr9 82580608 82580682 -59690762 - AluJo SINE Alu -237 75 2 897 127 0 15 chr9 82581734 82581868 -59689576 - FLAM_C SINE Alu -1 132 1 7396 41 8 11 chr9 82582023 82583256 -59688188 - L1PA6 LINE L1 -2 6152 4927 328 267 291 0 chr9 82583321 82583572 -59687872 - MER5C DNA MER1_type 0 324 1 589 336 69 18 chr9 82584091 82584484 -59686960 - L3 LINE CR1 -26 1551 1139 1706 223 22 86 chr9 82584593 82584780 -59686664 - MER34 LTR ERV1 0 542 345 2335 119 0 0 chr9 82584780 82585090 -59686354 - AluSx SINE Alu -2 310 1 1706 223 22 86 chr9 82585090 82585481 -59685963 - MER34 LTR ERV1 -197 345 1 183 161 0 89 chr9 82585668 82585724 -59685720 - L2 LINE L2 -298 2974 2924 1904 141 45 25 chr9 82586143 82586497 -59684947 + MER46B DNA MER2_type 1 236 0 1373 201 58 13 chr9 82587697 82588148 -59683296 - MLT2B1 LTR ERVL 0 520 1 430 138 0 0 chr9 82588355 82588420 -59683024 - FLAM_A SINE Alu -50 92 28 264 263 54 27 chr9 82589495 82589619 -59681825 + MIR SINE MIR 16 147 -61 353 287 33 40 chr9 82592201 82592351 -59679093 - MIR SINE MIR 0 262 114 930 260 50 11 chr9 82592527 82592804 -59678640 - L1ME3A LINE L1 -5 6165 5878 2498 61 13 10 chr9 82593617 82593927 -59677517 - AluY SINE Alu 0 311 1 472 61 0 15 chr9 82594906 82594972 -59676472 - Alu SINE Alu -16 296 232 1854 39 4 9 chr9 82594974 82595206 -59676238 - L1PA7 LINE L1 -205 5949 5719 431 184 0 23 chr9 82595334 82595421 -59676023 - L1MC2 LINE L1 -20 6324 6240 2513 60 0 0 chr9 82597088 82597386 -59674058 - AluY SINE Alu -13 298 1 207 0 0 0 chr9 82597457 82597480 -59673964 + (CCCTG)n Simple_repeat Simple_repeat 1 23 0 194 318 118 0 chr9 82598751 82598836 -59672608 - L2 LINE L2 -25 3247 3153 554 265 87 0 chr9 82599737 82599922 -59671522 - MIR SINE MIR -46 216 16 351 0 0 0 chr9 82601516 82601555 -59669889 + (CA)n Simple_repeat Simple_repeat 1 39 0 554 219 133 68 chr9 82602727 82602879 -59668565 - L1MC5 LINE L1 -60 7901 7760 1690 165 102 31 chr9 82602879 82603146 -59668298 + MER7A DNA MER2_type 1 294 -2744 2521 60 0 0 chr9 82603146 82603445 -59667999 + AluY SINE Alu 1 299 -12 1690 165 102 31 chr9 82603445 82603499 -59667945 + MER7A DNA MER2_type 294 343 -3 554 219 133 68 chr9 82603499 82603625 -59667819 - L1MC5 LINE L1 -201 7760 7605 225 196 0 0 chr9 82603663 82603714 -59667730 - L1MC5 LINE L1 -516 7445 7395 384 59 0 0 chr9 82604453 82604504 -59666940 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 249 180 0 0 chr9 82606171 82606221 -59665223 + CT-rich Low_complexity Low_complexity 1 50 0 1423 209 36 33 chr9 82606223 82606524 -59664920 - AluJo SINE Alu 0 302 1 22 35 0 0 chr9 82606920 82606949 -59664495 + AT_rich Low_complexity Low_complexity 1 29 0 309 294 149 32 chr9 82607377 82607625 -59663819 - MLT1J2 LTR MaLR -123 327 51 185 197 66 49 chr9 82607930 82607991 -59663453 + MIR SINE MIR 123 184 -78 286 96 0 19 chr9 82608401 82608453 -59662991 - Alu SINE Alu 0 300 250 292 271 47 24 chr9 82608734 82608904 -59662540 + A-rich Low_complexity Low_complexity 6 179 0 405 293 57 8 chr9 82609103 82609226 -59662218 + AluJo SINE Alu 15 143 -169 1758 161 20 27 chr9 82609229 82609521 -59661923 + AluJo SINE Alu 1 290 -22 2014 139 3 0 chr9 82609535 82609823 -59661621 + AluSx SINE Alu 6 294 -18 2090 123 0 3 chr9 82611084 82611369 -59660075 - AluSx SINE Alu -18 294 11 263 59 0 0 chr9 82611489 82611523 -59659921 - AluSx SINE Alu -267 34 1 1908 125 7 7 chr9 82611571 82611852 -59659592 - AluSx SINE Alu -31 281 1 2351 90 0 0 chr9 82612808 82613108 -59658336 + AluSc SINE Alu 1 300 -9 939 112 8 22 chr9 82613799 82613933 -59657511 - FLAM_C SINE Alu -10 133 2 1749 119 102 7 chr9 82615439 82615724 -59655720 - AluSx SINE Alu 0 312 1 1158 196 33 26 chr9 82615742 82616013 -59655431 - AluJo SINE Alu -39 273 1 315 0 0 0 chr9 82616043 82616078 -59655366 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2209 93 4 0 chr9 82616080 82616360 -59655084 - AluSg SINE Alu -29 281 1 2318 79 0 0 chr9 82618081 82618360 -59653084 - AluSg SINE Alu -31 279 1 2346 56 0 3 chr9 82618624 82618909 -59652535 - AluY SINE Alu -27 284 1 554 290 131 28 chr9 82619384 82619905 -59651539 + L1MC4 LINE L1 7391 8042 0 2357 79 3 22 chr9 82620034 82620349 -59651095 + AluSg SINE Alu 1 309 -1 228 200 0 0 chr9 82620349 82620399 -59651045 + (TA)n Simple_repeat Simple_repeat 1 50 0 310 233 47 0 chr9 82620400 82620486 -59650958 + L1MC4 LINE L1 6614 6703 -1339 25 31 0 0 chr9 82620577 82620609 -59650835 + AT_rich Low_complexity Low_complexity 1 32 0 2318 91 16 3 chr9 82620837 82621146 -59650298 - AluSp SINE Alu 0 313 1 2264 80 28 0 chr9 82621146 82621435 -59650009 - AluSp SINE Alu -16 297 1 2567 50 0 0 chr9 82621616 82621915 -59649529 + AluY SINE Alu 5 303 -8 1837 151 11 77 chr9 82622709 82623033 -59648411 + L1MB3 LINE L1 5814 6158 -25 1357 139 78 78 chr9 82623033 82623328 -59648116 + AluSx SINE Alu 1 295 -17 1837 151 11 77 chr9 82623328 82623347 -59648097 + L1MB3 LINE L1 6158 6133 -50 2171 110 7 0 chr9 82623347 82623639 -59647805 + AluSq SINE Alu 1 294 -19 1837 151 11 77 chr9 82623639 82623671 -59647773 + L1MB3 LINE L1 6132 6165 -18 186 397 0 35 chr9 82623778 82623894 -59647550 + MIR SINE MIR 29 140 -122 264 77 0 0 chr9 82624125 82624164 -59647280 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2128 93 0 4 chr9 82624167 82624446 -59646998 - AluSc SINE Alu -31 278 1 2356 93 0 10 chr9 82625642 82625954 -59645490 - AluY SINE Alu -2 309 1 2158 119 0 0 chr9 82627191 82627484 -59643960 + AluSx SINE Alu 5 297 -15 2162 98 7 7 chr9 82627570 82627865 -59643579 + AluSg SINE Alu 1 295 -15 1054 97 0 0 chr9 82629036 82629170 -59642274 - AluSg1 SINE Alu -175 134 1 2379 56 0 3 chr9 82629613 82629899 -59641545 + AluY SINE Alu 1 285 -26 198 103 0 0 chr9 82629899 82629928 -59641516 + (TA)n Simple_repeat Simple_repeat 1 29 0 749 152 61 38 chr9 82631455 82631587 -59639857 - FLAM_C SINE Alu -8 135 1 288 0 0 0 chr9 82632115 82632147 -59639297 + (TG)n Simple_repeat Simple_repeat 2 33 0 512 197 68 26 chr9 82632297 82632414 -59639030 - FLAM_A SINE Alu -9 124 3 295 308 123 15 chr9 82636953 82637083 -59634361 - MIR SINE MIR -98 164 21 2577 64 0 3 chr9 82637261 82637573 -59633871 + AluSx SINE Alu 1 311 -1 24 67 0 0 chr9 82637953 82637998 -59633446 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr9 82638137 82638158 -59633286 + AT_rich Low_complexity Low_complexity 1 21 0 1165 223 52 59 chr9 82638534 82638855 -59632589 - L1M3 LINE L1 -382 5798 5477 186 43 0 0 chr9 82638855 82638878 -59632566 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2228 92 3 0 chr9 82638881 82639163 -59632281 - AluSp SINE Alu -30 283 1 1165 223 52 59 chr9 82639163 82639406 -59632038 - L1M3 LINE L1 -705 5475 5201 207 0 0 0 chr9 82639676 82639699 -59631745 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr9 82640491 82640514 -59630930 + AT_rich Low_complexity Low_complexity 1 23 0 897 140 65 93 chr9 82640730 82640944 -59630500 - MER20 DNA MER1_type -11 208 1 2317 90 6 13 chr9 82641017 82641328 -59630116 + AluSx SINE Alu 1 309 -3 1965 130 7 11 chr9 82741538 82741848 -59529596 - AluSx SINE Alu 0 309 1 550 223 103 17 chr9 82742130 82742305 -59529139 + L2 LINE L2 3122 3311 -2 530 253 70 38 chr9 82742394 82742580 -59528864 - MIR SINE MIR 0 262 71 279 310 0 0 chr9 82743442 82743513 -59527931 + GA-rich Low_complexity Low_complexity 3 73 0 576 271 164 0 chr9 82743570 82743777 -59527667 + MIR SINE MIR 15 255 -7 416 268 0 0 chr9 82744707 82744804 -59526640 - MIR SINE MIR -16 246 150 28 0 0 0 chr9 82745023 82745051 -59526393 + AT_rich Low_complexity Low_complexity 1 28 0 2025 132 10 10 chr9 82745117 82745413 -59526031 + AluSx SINE Alu 4 299 -13 200 264 144 24 chr9 82745475 82745600 -59525844 + MIR SINE MIR 81 220 -42 1667 81 5 14 chr9 82746185 82746408 -59525036 + AluSp SINE Alu 8 228 -85 755 79 10 0 chr9 82746615 82746716 -59524728 - AluSg SINE Alu -179 131 30 1979 131 0 24 chr9 82746852 82747150 -59524294 + AluSx SINE Alu 1 291 -21 267 293 121 0 chr9 82747965 82748081 -59523363 + MIR SINE MIR 57 186 -76 663 266 82 21 chr9 82748150 82748383 -59523061 - MIR SINE MIR 0 262 16 2863 3 0 7 chr9 82748437 82748747 -59522697 + AluYa5 SINE Alu 1 308 -3 1074 83 0 0 chr9 82749216 82749349 -59522095 + AluSg SINE Alu 1 133 -177 2122 113 0 3 chr9 82749349 82749662 -59521782 + AluSg SINE Alu 1 312 0 572 158 54 9 chr9 82749667 82749815 -59521629 + MIR SINE MIR 38 198 -63 201 216 20 0 chr9 82749964 82750015 -59521429 + MIR SINE MIR 211 262 0 1027 180 33 0 chr9 82750487 82750670 -59520774 - MER5A DNA MER1_type 0 189 1 2302 50 3 7 chr9 82750781 82751063 -59520381 + AluY SINE Alu 31 311 0 2083 99 29 0 chr9 82752221 82752493 -59518951 + AluSx SINE Alu 1 280 -32 526 308 66 18 chr9 82754072 82754299 -59517145 + MIR SINE MIR 25 262 0 1903 168 0 3 chr9 82754347 82754657 -59516787 - AluSx SINE Alu -3 309 1 1279 128 0 10 chr9 82754715 82754911 -59516533 - MLT1B LTR MaLR 0 390 197 1746 184 96 66 chr9 82754967 82755315 -59516129 + MSTA LTR MaLR 9 345 -83 2061 128 0 17 chr9 82755315 82755605 -59515839 + AluSx SINE Alu 2 286 -26 378 0 0 0 chr9 82755612 82755654 -59515790 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1746 184 96 66 chr9 82755654 82755705 -59515739 + MSTA LTR MaLR 350 428 0 1110 115 6 23 chr9 82755711 82755885 -59515559 - MLT1B LTR MaLR -219 171 1 2328 102 0 0 chr9 82756135 82756428 -59515016 + AluSg SINE Alu 1 293 -17 2015 153 0 16 chr9 82756475 82756783 -59514661 - AluJb SINE Alu -8 304 2 189 132 0 0 chr9 82757217 82757255 -59514189 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 2402 80 17 0 chr9 82757297 82757599 -59513845 - AluSp SINE Alu -6 307 1 427 237 45 96 chr9 82757694 82757722 -59513722 - MIR SINE MIR -66 196 168 1751 174 17 3 chr9 82757722 82758016 -59513428 - AluJo SINE Alu -14 298 1 427 237 45 96 chr9 82758016 82758164 -59513280 - MIR SINE MIR -94 168 29 2376 103 3 0 chr9 82758376 82758686 -59512758 - AluSp SINE Alu 0 313 3 2403 102 0 3 chr9 82759396 82759710 -59511734 + AluSq SINE Alu 1 313 0 2109 98 3 77 chr9 82760570 82760907 -59510537 + AluSx SINE Alu 1 312 0 314 136 85 0 chr9 82761089 82761148 -59510296 + L1MA8 LINE L1 6209 6272 -19 2108 130 0 7 chr9 82761160 82761459 -59509985 - AluSx SINE Alu -15 297 1 1745 144 36 52 chr9 82761720 82762025 -59509419 + AluJo SINE Alu 2 301 -11 899 145 19 31 chr9 82762355 82762514 -59508930 - MLT1F1 LTR MaLR 0 567 411 423 115 161 23 chr9 82762605 82762692 -59508752 - MER5A DNA MER1_type -88 101 3 2276 81 0 3 chr9 82767103 82767386 -59504058 - AluY SINE Alu -17 294 13 22 0 0 0 chr9 82767680 82767702 -59503742 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 82769751 82769772 -59501672 + AT_rich Low_complexity Low_complexity 1 21 0 2771 13 3 10 chr9 82769772 82770085 -59501359 - AluYa5 SINE Alu 0 311 1 2150 136 0 0 chr9 82770380 82770675 -59500769 + AluSx SINE Alu 1 295 -17 185 32 0 65 chr9 82772163 82772194 -59499250 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 197 59 59 0 chr9 82772215 82772249 -59499195 + GA-rich Low_complexity Low_complexity 2 37 0 209 264 77 11 chr9 82772938 82773029 -59498415 - MIR SINE MIR -77 185 89 1694 166 43 48 chr9 82773848 82774166 -59497278 + MLT1B LTR MaLR 1 319 -71 1963 127 6 35 chr9 82774166 82774482 -59496962 - AluSx SINE Alu -5 307 1 2303 91 16 13 chr9 82774484 82774793 -59496651 - AluSx SINE Alu -2 310 1 1694 166 43 48 chr9 82774793 82774863 -59496581 + MLT1B LTR MaLR 320 390 0 565 218 114 50 chr9 82775207 82775427 -59496017 - MIR SINE MIR 0 262 29 2419 86 0 3 chr9 82775431 82775734 -59495710 - AluSc SINE Alu -7 302 1 220 231 0 19 chr9 82775771 82775823 -59495621 + GA-rich Low_complexity Low_complexity 2 52 0 191 259 69 0 chr9 82775823 82775881 -59495563 + MIR SINE MIR 74 135 -127 2427 79 0 10 chr9 82776112 82776417 -59495027 + AluSc SINE Alu 1 302 -7 237 83 0 0 chr9 82777592 82777628 -59493816 + (TG)n Simple_repeat Simple_repeat 1 36 0 203 277 177 23 chr9 82777738 82777868 -59493576 - MIR3 SINE MIR -55 153 4 2194 125 3 0 chr9 82777984 82778295 -59493149 + AluSx SINE Alu 1 312 0 210 296 37 12 chr9 82778419 82778500 -59492944 + L3 LINE CR1 300 382 -1195 2045 135 4 0 chr9 82779174 82779455 -59491989 + AluSq SINE Alu 1 282 -31 180 0 0 0 chr9 82779458 82779478 -59491966 + (CAA)n Simple_repeat Simple_repeat 2 21 0 260 271 47 39 chr9 82779515 82779644 -59491800 - L1ME LINE L1 -317 5804 5675 1075 67 0 22 chr9 82779716 82779850 -59491594 + AluSg SINE Alu 1 131 -179 2045 166 0 0 chr9 82779858 82780166 -59491278 + AluSx SINE Alu 5 312 0 343 284 100 50 chr9 82780241 82780335 -59491109 - L1ME LINE L1 -2177 3969 3881 2360 82 3 0 chr9 82780335 82780628 -59490816 - AluSg SINE Alu -16 294 1 343 284 100 50 chr9 82780628 82780832 -59490612 - L1ME LINE L1 -2265 3881 3656 2301 95 0 13 chr9 82781014 82781318 -59490126 - AluSq SINE Alu -13 300 1 798 298 75 82 chr9 82781347 82781656 -59489788 - L1ME LINE L1 -2573 3573 3263 1669 188 7 7 chr9 82781656 82781964 -59489480 - AluJb SINE Alu 0 312 5 798 298 75 82 chr9 82781964 82782300 -59489144 - L1ME LINE L1 -2883 3263 2926 2313 91 3 0 chr9 82782300 82782608 -59488836 - AluSc SINE Alu 0 309 1 798 298 75 82 chr9 82782608 82782660 -59488784 - L1ME LINE L1 -3220 2926 2875 2257 98 6 16 chr9 82782660 82782975 -59488469 - AluSx SINE Alu 0 312 1 798 298 75 82 chr9 82782975 82783172 -59488272 - L1ME LINE L1 -3271 2875 2684 2203 86 0 7 chr9 82783172 82783463 -59487981 + AluY SINE Alu 1 289 -22 2381 79 0 13 chr9 82783559 82783862 -59487582 + AluY SINE Alu 1 299 -12 2282 103 3 0 chr9 82783919 82784211 -59487233 + AluSp SINE Alu 1 293 -20 259 253 21 0 chr9 82784396 82784491 -59486953 - L1ME LINE L1 -3920 2226 2130 2349 90 3 0 chr9 82784510 82784809 -59486635 - AluSp SINE Alu -13 300 1 2099 125 3 10 chr9 82785267 82785579 -59485865 + AluSx SINE Alu 3 312 0 2250 129 0 0 chr9 82786519 82786828 -59484616 + AluSq SINE Alu 1 309 -4 2359 90 0 0 chr9 82786830 82787129 -59484315 + AluY SINE Alu 1 299 -12 7177 125 24 44 chr9 82787358 82788614 -59482830 + Tigger3b DNA MER2_type 1 1231 0 291 302 28 50 chr9 82789058 82789240 -59482204 + HAL1 LINE L1 2323 2500 -7 671 188 73 99 chr9 82789501 82789617 -59481827 - MER5A DNA MER1_type -1 188 76 2136 120 0 7 chr9 82789617 82789928 -59481516 - AluSx SINE Alu 0 309 1 671 188 73 99 chr9 82789928 82790002 -59481442 - MER5A DNA MER1_type -113 76 2 2124 116 14 3 chr9 82790554 82790846 -59480598 + AluSq SINE Alu 1 295 -18 180 0 0 0 chr9 82790856 82790876 -59480568 + (CACAC)n Simple_repeat Simple_repeat 3 22 0 2318 116 3 0 chr9 82790909 82791220 -59480224 + AluSx SINE Alu 1 312 0 210 333 88 0 chr9 82791248 82791362 -59480082 - L2 LINE L2 -2 3270 3147 335 296 44 0 chr9 82792266 82792401 -59479043 + L2 LINE L2 2566 2706 -608 2088 111 38 0 chr9 82792479 82792768 -59478676 + AluSx SINE Alu 1 300 -12 2302 98 0 0 chr9 82793019 82793315 -59478129 + AluSg SINE Alu 8 303 -7 2933 122 7 9 chr9 82793447 82793898 -59477546 + L1PB1 LINE L1 5702 6151 0 261 0 0 0 chr9 82793929 82793958 -59477486 + (CA)n Simple_repeat Simple_repeat 2 30 0 1968 97 56 0 chr9 82794789 82795057 -59476387 + AluSp SINE Alu 11 293 -20 1963 129 13 33 chr9 82795128 82795431 -59476013 + AluSg SINE Alu 1 297 -13 2950 6 0 0 chr9 82795431 82795742 -59475702 + AluYb8 SINE Alu 1 311 -7 1856 110 13 62 chr9 82796118 82796426 -59475018 - AluSx SINE Alu -19 293 1 2229 108 0 3 chr9 82796650 82796947 -59474497 + AluSg SINE Alu 1 296 -14 2855 9 0 16 chr9 82797105 82797421 -59474023 + AluYa5 SINE Alu 1 311 0 2169 128 0 10 chr9 82798039 82798352 -59473092 + AluSx SINE Alu 1 310 -2 1420 151 81 46 chr9 82798610 82799085 -59472359 + MER1B DNA MER1_type 4 339 0 2495 64 0 0 chr9 82799447 82799745 -59471699 - AluSg SINE Alu -12 298 1 610 271 48 75 chr9 82801014 82801227 -59470217 + L2 LINE L2 2989 3191 -122 2415 101 0 0 chr9 82801227 82801533 -59469911 + AluSc SINE Alu 1 306 -3 610 271 48 75 chr9 82801533 82801651 -59469793 + L2 LINE L2 3191 3311 -2 21 0 0 0 chr9 82802202 82802223 -59469221 + AT_rich Low_complexity Low_complexity 1 21 0 312 138 0 31 chr9 82802588 82802653 -59468791 - Alu SINE Alu 0 300 238 994 139 0 13 chr9 82802781 82802932 -59468512 - AluSx SINE Alu -142 170 22 2272 117 0 0 chr9 82803225 82803533 -59467911 - AluSg SINE Alu -2 308 1 2237 85 39 0 chr9 82803748 82804029 -59467415 + AluSq SINE Alu 6 297 -16 2295 105 10 0 chr9 82804845 82805149 -59466295 + AluSg SINE Alu 1 307 -3 336 289 0 67 chr9 82805208 82805283 -59466161 - MIR3 SINE MIR -1 207 143 1979 168 64 9 chr9 82805283 82805629 -59465815 + MLT1A1 LTR MaLR 1 365 0 336 289 0 67 chr9 82805629 82805688 -59465756 - MIR3 SINE MIR -65 143 82 33 0 0 0 chr9 82806797 82806830 -59464614 + AT_rich Low_complexity Low_complexity 1 33 0 866 145 8 0 chr9 82807077 82807208 -59464236 + FLAM_C SINE Alu 2 133 0 304 216 10 49 chr9 82807251 82807353 -59464091 + L1MC5 LINE L1 7832 7929 -32 813 158 16 0 chr9 82807989 82808253 -59463191 + CT-rich Low_complexity Low_complexity 1 268 0 2021 131 7 3 chr9 82808270 82808575 -59462869 - AluSx SINE Alu -6 306 1 2566 4 0 0 chr9 82808632 82808904 -59462540 - AluYa5 SINE Alu -4 307 36 2064 114 35 0 chr9 82809226 82809515 -59461929 + AluSq SINE Alu 1 299 -14 40 37 0 0 chr9 82810039 82810093 -59461351 + AT_rich Low_complexity Low_complexity 1 54 0 2440 75 3 7 chr9 82810854 82811161 -59460283 + AluSq SINE Alu 1 306 -7 246 316 41 63 chr9 82811171 82811331 -59460113 + L1ME4a LINE L1 4549 4711 -1435 195 42 0 0 chr9 82811331 82811355 -59460089 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 246 316 41 63 chr9 82811355 82811704 -59459740 + L1ME4a LINE L1 4711 5047 -1099 446 321 82 46 chr9 82811794 82811911 -59459533 + L1ME4a LINE L1 5628 5739 -382 2372 124 39 33 chr9 82811911 82812273 -59459171 - THE1B LTR MaLR 0 364 1 446 321 82 46 chr9 82812273 82812435 -59459009 + L1ME4a LINE L1 5739 5917 -204 2372 89 0 0 chr9 82812662 82812966 -59458478 + AluY SINE Alu 1 304 -7 203 384 112 0 chr9 82812969 82813094 -59458350 - L2 LINE L2 -674 2640 2502 817 284 66 85 chr9 82813513 82814085 -59457359 + L2 LINE L2 2720 3305 -8 473 330 82 48 chr9 82814275 82814363 -59457081 - L2 LINE L2 0 3272 3189 2104 117 0 0 chr9 82814363 82814680 -59456764 + AluSx SINE Alu 2 318 0 473 330 82 48 chr9 82814680 82815053 -59456391 - L2 LINE L2 -83 3189 2800 207 365 172 23 chr9 82815095 82815577 -59455867 - L2 LINE L2 -414 2900 2347 222 37 0 0 chr9 82815671 82815698 -59455746 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2160 101 4 0 chr9 82815705 82815983 -59455461 - AluSp SINE Alu -33 280 2 1397 298 57 2 chr9 82816144 82816564 -59454880 - LTR16A LTR ERVL 0 450 8 2054 148 0 7 chr9 82816586 82816891 -59454553 - AluSx SINE Alu -8 304 2 435 282 103 0 chr9 82816990 82817107 -59454337 - L2 LINE L2 -4 3268 3140 192 40 0 0 chr9 82817111 82817136 -59454308 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1907 142 17 7 chr9 82817182 82817658 -59453786 + AluSx SINE Alu 1 479 0 204 125 0 0 chr9 82817658 82817690 -59453754 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 1286 189 25 56 chr9 82817749 82818071 -59453373 - MLT1D LTR MaLR -193 312 1 2251 104 0 3 chr9 82818086 82818394 -59453050 - AluSx SINE Alu -5 307 1 309 228 246 0 chr9 82818394 82818508 -59452936 + MIR SINE MIR 121 262 0 185 321 49 0 chr9 82818822 82818903 -59452541 + L2 LINE L2 3188 3272 0 213 39 0 0 chr9 82819897 82819923 -59451521 + (CA)n Simple_repeat Simple_repeat 2 27 0 774 186 0 76 chr9 82820479 82820624 -59450820 + FLAM_A SINE Alu 1 134 -8 232 291 101 0 chr9 82821390 82821418 -59450026 + MER117 DNA MER1_type 1 25 -172 2151 162 15 25 chr9 82821418 82821812 -59449632 + MLT1B LTR MaLR 1 390 0 232 291 101 0 chr9 82821812 82821862 -59449582 + MER117 DNA MER1_type 25 87 -110 1403 201 0 111 chr9 82822063 82822396 -59449048 + AluJo SINE Alu 1 296 -6 2167 105 0 7 chr9 82822612 82822916 -59448528 - AluY SINE Alu -7 304 3 2320 85 0 25 chr9 82823343 82823661 -59447783 + AluY SINE Alu 1 310 -1 2209 107 3 3 chr9 82823681 82823981 -59447463 + AluSp SINE Alu 3 302 -11 2408 76 0 3 chr9 82824102 82824404 -59447040 - AluY SINE Alu -10 301 1 3003 227 16 64 chr9 82824772 82824841 -59446603 - L1ME1 LINE L1 -17 6149 6078 3370 127 88 32 chr9 82824841 82825299 -59446145 + LTR24C LTR ERV1 1 432 -203 189 0 0 0 chr9 82825299 82825320 -59446124 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2297 90 0 0 chr9 82825324 82825613 -59445831 - AluSg SINE Alu -21 289 1 3370 127 88 32 chr9 82825613 82825750 -59445694 + LTR24C LTR ERV1 434 635 0 3003 227 16 64 chr9 82825750 82826109 -59445335 - L1ME1 LINE L1 -88 6078 5703 2119 127 3 10 chr9 82826109 82826416 -59445028 + AluSp SINE Alu 1 305 -8 3003 227 16 64 chr9 82826416 82826807 -59444637 - L1ME1 LINE L1 -463 5703 5369 1959 169 49 30 chr9 82826807 82827175 -59444269 + THE1C LTR MaLR 1 375 0 3003 227 16 64 chr9 82827175 82827216 -59444228 - L1ME1 LINE L1 -797 5369 5328 402 114 38 0 chr9 82827219 82827298 -59444146 + CT-rich Low_complexity Low_complexity 3 84 0 2175 122 10 0 chr9 82827301 82827604 -59443840 - AluSx SINE Alu -2 310 5 2013 247 55 27 chr9 82827611 82828242 -59443202 - L1ME1 LINE L1 -840 5306 4658 373 301 25 49 chr9 82828242 82828367 -59443077 + L2 LINE L2 2542 2664 -650 2267 112 0 0 chr9 82828367 82828670 -59442774 - AluSg SINE Alu -7 303 1 373 301 25 49 chr9 82828670 82828707 -59442737 + L2 LINE L2 2664 2700 -614 2075 110 4 0 chr9 82828735 82829007 -59442437 + AluSx SINE Alu 1 273 -39 1295 206 86 64 chr9 82829194 82829567 -59441877 - MLT1B LTR MaLR -7 383 3 180 234 0 0 chr9 82829587 82829634 -59441810 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 1805 134 39 11 chr9 82829994 82830277 -59441167 + AluJb SINE Alu 3 293 -19 1588 112 86 0 chr9 82830294 82830562 -59440882 + L1MA4 LINE L1 6003 6293 -7 1807 147 7 20 chr9 82830662 82830955 -59440489 + AluJo SINE Alu 20 308 -4 288 0 0 0 chr9 82830960 82830992 -59440452 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 926 99 8 0 chr9 82830992 82831174 -59440270 + AluY SINE Alu 173 355 0 580 253 12 24 chr9 82831816 82831982 -59439462 + MIR SINE MIR 53 216 -46 923 223 49 93 chr9 82832041 82832386 -59439058 - MER102b DNA MER1_type -1 340 11 231 262 36 60 chr9 82832387 82832449 -59438995 - L2 LINE L2 -30 3283 3222 1820 266 37 2 chr9 82832449 82832882 -59438562 + LTR16A LTR ERVL 3 450 0 231 262 36 60 chr9 82832882 82832903 -59438541 - L2 LINE L2 -91 3222 3202 229 35 0 0 chr9 82833032 82833061 -59438383 - Alu SINE Alu -97 202 174 2303 125 0 9 chr9 82833061 82833397 -59438047 - L1PA15 LINE L1 -124 6041 5709 2382 92 0 0 chr9 82833422 82833716 -59437728 - AluSx SINE Alu -18 294 1 1629 185 34 70 chr9 82833894 82834250 -59437194 + MER7A DNA MER2_type 6 346 0 2337 93 0 0 chr9 82834269 82834569 -59436875 + AluY SINE Alu 1 300 -11 550 236 93 30 chr9 82835672 82835909 -59435535 - MER112 DNA MER1_type -1 255 4 2334 96 0 10 chr9 82836360 82836672 -59434772 - AluY SINE Alu -2 309 1 2242 114 13 0 chr9 82837305 82837612 -59433832 - AluSq SINE Alu -2 311 1 189 364 81 0 chr9 82838032 82838131 -59433313 - MIR3 SINE MIR -3 205 99 933 150 0 52 chr9 82838235 82838408 -59433036 + AluJb SINE Alu 138 301 -11 200 351 19 54 chr9 82838413 82838618 -59432826 - L2 LINE L2 -806 2508 2311 617 344 68 10 chr9 82838644 82839028 -59432416 - L2 LINE L2 -1262 2052 1647 297 0 0 0 chr9 82839449 82839482 -59431962 + (TG)n Simple_repeat Simple_repeat 2 34 0 2235 82 3 3 chr9 82839483 82839775 -59431669 - AluY SINE Alu -19 292 1 238 196 0 0 chr9 82839776 82839832 -59431612 + L1MC4 LINE L1 6640 6695 -1347 228 116 0 0 chr9 82839841 82839863 -59431581 + (TA)n Simple_repeat Simple_repeat 2 23 -21 2089 136 7 0 chr9 82839863 82840158 -59431286 - AluSx SINE Alu -15 297 1 228 116 0 0 chr9 82840158 82840178 -59431266 + (TA)n Simple_repeat Simple_repeat 22 44 0 2320 100 0 3 chr9 82840420 82840729 -59430715 + AluSp SINE Alu 1 308 -5 305 315 0 9 chr9 82840980 82841091 -59430353 + LTR67 LTR ERVL 448 557 0 364 176 72 13 chr9 82841366 82841519 -59429925 + (TA)n Simple_repeat Simple_repeat 2 163 0 2208 116 0 0 chr9 82841519 82841830 -59429614 - AluSx SINE Alu 0 311 1 525 297 82 9 chr9 82841857 82842050 -59429394 - MIR SINE MIR -12 250 36 186 71 0 0 chr9 82842050 82842078 -59429366 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 525 297 82 9 chr9 82842078 82842116 -59429328 - MIR SINE MIR -226 36 2 310 286 78 32 chr9 82842222 82842376 -59429068 - MER117 DNA MER1_type -1 196 36 182 242 32 16 chr9 82842433 82842495 -59428949 - MIR SINE MIR -99 163 101 271 273 23 11 chr9 82842514 82842602 -59428842 + MIR SINE MIR 149 237 -25 885 221 24 52 chr9 82842641 82842890 -59428554 + L1MB5 LINE L1 5933 6174 0 435 192 0 0 chr9 82842913 82842986 -59428458 - MER96 DNA MER1_type? -102 73 1 263 385 87 0 chr9 82844006 82844110 -59427334 - L2 LINE L2 -59 3213 3101 2285 83 0 38 chr9 82844842 82845016 -59426428 - AluSp SINE Alu -11 302 123 197 33 33 0 chr9 82845016 82845046 -59426398 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2267 70 0 18 chr9 82845049 82845335 -59426109 - AluY SINE Alu -30 281 1 2285 83 0 38 chr9 82845335 82845470 -59425974 - AluSp SINE Alu -192 121 1 1662 168 3 34 chr9 82845757 82846054 -59425390 - AluJo SINE Alu -20 292 5 386 197 57 74 chr9 82846304 82846426 -59425018 + LTR33 LTR ERVL 402 521 0 2268 82 0 0 chr9 82846588 82846904 -59424540 - AluY SINE Alu 0 316 1 2102 119 0 7 chr9 82847020 82847345 -59424099 - AluSx SINE Alu 0 323 1 2388 101 0 0 chr9 82848208 82848514 -59422930 - AluSg SINE Alu -4 306 1 2400 63 0 0 chr9 82848595 82848882 -59422562 - AluY SINE Alu -24 287 1 425 139 127 0 chr9 82849115 82849194 -59422250 + 5S rRNA rRNA 2 90 -31 553 252 115 44 chr9 82849308 82849534 -59421910 + MLT1K LTR MaLR 335 576 -12 423 323 12 25 chr9 82849918 82850079 -59421365 - MIR SINE MIR -56 206 48 181 235 20 39 chr9 82850870 82850921 -59420523 + MIR SINE MIR 192 241 -21 2320 104 7 0 chr9 82851050 82851349 -59420095 - AluSx SINE Alu -11 301 1 659 242 201 16 chr9 82851507 82851751 -59419693 - LTR16A1 LTR ERVL -1 456 168 433 163 0 35 chr9 82851830 82851916 -59419528 + ORSL DNA AcHobo 1 83 -192 2029 120 0 10 chr9 82851925 82852225 -59419219 + AluY SINE Alu 1 297 -14 2210 104 10 0 chr9 82852236 82852534 -59418910 + AluSq SINE Alu 1 301 -12 771 200 142 0 chr9 82852604 82852794 -59418650 + ORSL DNA AcHobo 59 275 0 1800 178 86 43 chr9 82852967 82853342 -59418102 + MLT1C LTR MaLR 6 404 -63 2576 53 0 0 chr9 82853342 82853641 -59417803 - AluY SINE Alu -12 299 1 1800 178 86 43 chr9 82853641 82853708 -59417736 + MLT1C LTR MaLR 404 467 0 357 244 12 0 chr9 82853939 82854021 -59417423 + HAL1 LINE L1 1493 1575 -932 2238 117 0 0 chr9 82854190 82854489 -59416955 + AluSg SINE Alu 1 299 -11 342 336 73 0 chr9 82854528 82854638 -59416806 + L2 LINE L2 3151 3268 -4 460 284 119 0 chr9 82855005 82855181 -59416263 - MIR SINE MIR -10 252 56 1189 121 0 0 chr9 82855220 82855523 -59415921 + AluSx SINE Alu 5 307 0 2228 78 60 0 chr9 82855579 82855863 -59415581 + AluY SINE Alu 1 301 -10 193 299 82 88 chr9 82855863 82856010 -59415434 + MER5A DNA MER1_type 44 189 0 316 200 111 52 chr9 82856079 82856242 -59415202 - L1M4 LINE L1 -1191 4955 4781 2307 111 0 0 chr9 82856768 82857066 -59414378 + AluSc SINE Alu 1 298 -11 1978 114 18 0 chr9 82857195 82857507 -59413937 + AluSg1 SINE Alu 1 317 0 181 302 0 0 chr9 82857565 82857618 -59413826 - MIR SINE MIR -69 139 87 2070 141 3 0 chr9 82858205 82858502 -59412942 - AluSx SINE Alu -10 302 5 244 366 60 8 chr9 82858755 82858889 -59412555 - MER5A DNA MER1_type -6 183 43 5920 145 12 14 chr9 82859332 82859980 -59411464 + L1PA16 LINE L1 4919 5567 -599 613 89 0 0 chr9 82859980 82860059 -59411385 - MADE1 DNA Mariner -1 79 1 5920 145 12 14 chr9 82860059 82860279 -59411165 + L1PA16 LINE L1 5567 5786 -380 2178 108 10 0 chr9 82860279 82860567 -59410877 + AluSg SINE Alu 17 307 -3 5920 145 12 14 chr9 82860567 82860955 -59410489 + L1PA16 LINE L1 5786 6166 0 241 347 119 68 chr9 82860979 82861198 -59410246 + L2 LINE L2 3038 3267 -5 3488 105 10 22 chr9 82861260 82861757 -59409687 + L1PB2 LINE L1 5659 6149 -2 2560 71 0 3 chr9 82861759 82862070 -59409374 + AluY SINE Alu 1 310 -1 22 0 0 0 chr9 82862228 82862250 -59409194 + AT_rich Low_complexity Low_complexity 1 22 0 352 307 96 40 chr9 82862338 82862589 -59408855 - L2 LINE L2 -267 3005 2739 1919 132 3 65 chr9 82862849 82863174 -59408270 + AluJo SINE Alu 1 305 -7 360 0 0 0 chr9 82863551 82863591 -59407853 + (CA)n Simple_repeat Simple_repeat 2 41 0 411 173 0 0 chr9 82863872 82863953 -59407491 + CT-rich Low_complexity Low_complexity 2 82 0 642 79 0 0 chr9 82863958 82864047 -59407397 + (TCTCC)n Simple_repeat Simple_repeat 5 93 0 402 146 0 0 chr9 82864376 82864431 -59407013 - Alu SINE Alu -255 55 1 301 311 96 36 chr9 82864966 82865133 -59406311 - MER117 DNA MER1_type 0 197 21 204 216 0 0 chr9 82865476 82865513 -59405931 + (CA)n Simple_repeat Simple_repeat 2 38 0 234 122 11 200 chr9 82865540 82865630 -59405814 + MIR3 SINE MIR 108 180 -28 23 0 0 0 chr9 82865771 82865794 -59405650 + AT_rich Low_complexity Low_complexity 1 23 0 359 102 0 0 chr9 82866410 82866459 -59404985 - MLT2B1 LTR ERVL 0 520 472 307 148 457 0 chr9 82866465 82866546 -59404898 - MLT2B1 LTR ERVL -179 341 224 279 240 140 30 chr9 82866644 82866744 -59404700 - MER5C DNA MER1_type -6 318 208 1679 84 9 0 chr9 82866751 82866977 -59404467 + AluY SINE Alu 1 228 -83 338 261 11 11 chr9 82867757 82867845 -59403599 + MIR SINE MIR 64 151 -111 245 328 39 64 chr9 82868787 82868991 -59402453 + L3b LINE CR1 1102 1300 -283 2768 165 172 7 chr9 82869165 82869741 -59401703 - LTR51 LTR ERV1 0 671 1 2690 111 22 5 chr9 82869956 82870369 -59401075 + LTR56 LTR ERV1 9 428 -17 3076 126 9 2 chr9 82870369 82870798 -59400646 - MER57B LTR ERV1 0 434 3 12502 103 108 59 chr9 82870800 82872924 -59398520 - MER57B-int LTR ERV1 0 7537 5310 6491 200 76 42 chr9 82872930 82874304 -59397140 - MER57B-int LTR ERV1 -2232 2648 2395 2252 112 0 3 chr9 82874304 82874608 -59396836 - AluY SINE Alu -8 303 1 6491 200 76 42 chr9 82874608 82875274 -59396170 - MER57B-int LTR ERV1 -2485 2395 1753 2671 130 23 5 chr9 82875497 82875927 -59395517 + LTR56 LTR ERV1 6 443 -2 215 30 0 30 chr9 82884915 82884948 -59386496 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 1217 195 9 9 chr9 82885125 82885351 -59386093 - HUERS-P3 LTR ERV1 -8675 244 19 4714 119 2 5 chr9 82885369 82885983 -59385461 - LTR9 LTR ERV1 0 612 1 2266 174 59 13 chr9 82885983 82886443 -59385001 + L1MB7 LINE L1 5704 6184 0 2738 164 115 7 chr9 82886452 82887024 -59384420 + L1MC1 LINE L1 5700 6333 0 251 321 122 8 chr9 82887211 82887342 -59384102 + L2 LINE L2 3127 3272 0 1611 163 7 4 chr9 82887364 82887640 -59383804 - AluSq SINE Alu -9 304 28 329 235 25 12 chr9 82888429 82888510 -59382934 + MIR SINE MIR 63 144 -118 2702 139 28 7 chr9 82888799 82889224 -59382220 - MER57B LTR ERV1 0 434 1 2804 153 187 5 chr9 82889611 82890179 -59381265 - LTR51 LTR ERV1 0 671 1 2579 137 21 5 chr9 82890398 82890828 -59380616 + LTR56 LTR ERV1 9 445 0 276 225 38 0 chr9 82891412 82891490 -59379954 + LTR45 LTR ERV1 343 463 -62 261 0 0 0 chr9 82892984 82893013 -59378431 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 222 37 0 0 chr9 82893816 82893843 -59377601 + (T)n Simple_repeat Simple_repeat 1 27 0 239 0 0 31 chr9 82899995 82900027 -59371417 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 207 240 80 70 chr9 82900217 82900317 -59371127 + L2 LINE L2 693 793 -2521 1707 173 0 3 chr9 82900364 82900653 -59370791 - AluSx SINE Alu -24 288 1 248 218 0 0 chr9 82900770 82900825 -59370619 + L1MB7 LINE L1 6117 6171 -13 3517 171 76 11 chr9 82901663 82902411 -59369033 + L1MB8 LINE L1 5381 6177 -1 2069 167 143 8 chr9 82902550 82902927 -59368517 - MSTA LTR MaLR 0 428 1 2144 137 38 62 chr9 82903038 82903375 -59368069 - THE1B LTR MaLR 0 364 35 2334 98 0 7 chr9 82903375 82903681 -59367763 + AluY SINE Alu 1 304 -7 2144 137 38 62 chr9 82903681 82903716 -59367728 - THE1B LTR MaLR -329 35 1 8960 95 166 3 chr9 82903716 82905075 -59366369 - THE1B-int LTR MaLR 0 1580 1 2143 138 45 28 chr9 82905077 82905431 -59366013 - THE1B LTR MaLR -2 362 3 21 57 0 0 chr9 82905438 82905473 -59365971 + AT_rich Low_complexity Low_complexity 1 35 0 974 244 73 60 chr9 82905750 82905799 -59365645 - L1MC4 LINE L1 -7 8035 7988 2343 168 62 12 chr9 82905799 82906205 -59365239 - MSTB LTR MaLR 0 426 1 974 244 73 60 chr9 82906205 82906310 -59365134 - L1MC4 LINE L1 -54 7988 7886 363 23 0 0 chr9 82906310 82906354 -59365090 + (CA)n Simple_repeat Simple_repeat 2 45 0 974 244 73 60 chr9 82906354 82906678 -59364766 - L1MC4 LINE L1 -156 7886 7550 2493 241 55 37 chr9 82908391 82909196 -59362248 - L1MCa LINE L1 -3096 3330 2512 2519 51 3 19 chr9 82909197 82909513 -59361931 + AluYa5 SINE Alu 1 311 0 1060 132 0 7 chr9 82909513 82909665 -59361779 + AluSq SINE Alu 126 276 -37 255 61 0 0 chr9 82909670 82909703 -59361741 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 659 215 53 17 chr9 82909703 82909937 -59361507 - L1MCa LINE L1 -3947 2479 2280 2741 158 90 35 chr9 82909938 82910538 -59360906 - L1MA9 LINE L1 -37 6275 5643 2140 204 180 62 chr9 82910542 82910715 -59360729 - L1MCb LINE L1 -3929 2816 2665 2258 96 3 7 chr9 82910715 82911017 -59360427 - AluSp SINE Alu -12 301 1 2140 204 180 62 chr9 82911017 82911177 -59360267 - L1MCb LINE L1 -4080 2665 2525 2445 57 0 7 chr9 82911177 82911473 -59359971 - AluY SINE Alu -17 294 1 2140 204 180 62 chr9 82911473 82911555 -59359889 - L1MCb LINE L1 -4220 2525 2454 1590 206 0 14 chr9 82911555 82911846 -59359598 - AluJb SINE Alu -25 287 1 2140 204 180 62 chr9 82911846 82912174 -59359270 - L1MCb LINE L1 -4291 2454 2166 473 0 18 0 chr9 82912174 82912231 -59359213 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 2140 204 180 62 chr9 82912231 82912314 -59359130 - L1MCb LINE L1 -4579 2166 2094 186 43 0 0 chr9 82912314 82912337 -59359107 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2140 204 180 62 chr9 82912337 82912619 -59358825 - L1MCb LINE L1 -4651 2094 1559 257 91 0 0 chr9 82912628 82912661 -59358783 - Alu SINE Alu -12 296 264 4396 236 44 7 chr9 82912666 82913833 -59357611 - L1MCb LINE L1 -4851 1194 20 1059 161 6 0 chr9 82914474 82914648 -59356796 - AluSg/x SINE Alu 0 312 138 2531 65 0 0 chr9 82914658 82914965 -59356479 - AluY SINE Alu -4 307 1 30 0 0 0 chr9 82915254 82915284 -59356160 + AT_rich Low_complexity Low_complexity 1 30 0 936 243 67 71 chr9 82915375 82915447 -59355997 - MLT1G3 LTR MaLR 0 567 496 2374 93 0 6 chr9 82915447 82915759 -59355685 - AluY SINE Alu -1 310 1 936 243 67 71 chr9 82915759 82916202 -59355242 - MLT1G3 LTR MaLR -71 496 14 2288 64 0 30 chr9 82916520 82916815 -59354629 + AluY SINE Alu 17 302 -9 223 305 0 37 chr9 82916969 82917051 -59354393 + GA-rich Low_complexity Low_complexity 2 80 0 258 345 7 28 chr9 82917113 82917258 -59354186 + L2 LINE L2 2521 2662 -652 2495 74 0 3 chr9 82917365 82917676 -59353768 - AluY SINE Alu -1 310 1 1112 61 0 0 chr9 82917679 82917811 -59353633 - AluSq/x SINE Alu -181 132 1 1662 168 3 34 chr9 82918098 82918395 -59353049 - AluJo SINE Alu -20 292 5 386 197 57 74 chr9 82918645 82918767 -59352677 + LTR33 LTR ERVL 402 521 0 2268 82 0 0 chr9 82918929 82919245 -59352199 - AluY SINE Alu 0 316 1 2102 119 0 7 chr9 82919361 82919686 -59351758 - AluSx SINE Alu 0 323 1 2388 101 0 0 chr9 82920549 82920855 -59350589 - AluSg SINE Alu -4 306 1 2400 63 0 0 chr9 82920936 82921223 -59350221 - AluY SINE Alu -24 287 1 425 139 127 0 chr9 82921456 82921535 -59349909 + 5S rRNA rRNA 2 90 -31 553 252 115 44 chr9 82921649 82921875 -59349569 + MLT1K LTR MaLR 335 576 -12 423 323 12 25 chr9 82922259 82922420 -59349024 - MIR SINE MIR -56 206 48 181 235 20 39 chr9 82923211 82923262 -59348182 + MIR SINE MIR 192 241 -21 2320 104 7 0 chr9 82923391 82923690 -59347754 - AluSx SINE Alu -11 301 1 659 242 201 16 chr9 82923848 82924092 -59347352 - LTR16A1 LTR ERVL -1 456 168 433 163 0 35 chr9 82924171 82924257 -59347187 + ORSL DNA AcHobo 1 83 -192 2029 120 0 10 chr9 82924266 82924566 -59346878 + AluY SINE Alu 1 297 -14 2210 104 10 0 chr9 82924577 82924875 -59346569 + AluSq SINE Alu 1 301 -12 771 200 142 0 chr9 82924945 82925135 -59346309 + ORSL DNA AcHobo 59 275 0 1800 178 86 43 chr9 82925308 82925683 -59345761 + MLT1C LTR MaLR 6 404 -63 2576 53 0 0 chr9 82925683 82925982 -59345462 - AluY SINE Alu -12 299 1 1800 178 86 43 chr9 82925982 82926049 -59345395 + MLT1C LTR MaLR 404 467 0 357 244 12 0 chr9 82926280 82926362 -59345082 + HAL1 LINE L1 1493 1575 -932 2238 117 0 0 chr9 82926531 82926830 -59344614 + AluSg SINE Alu 1 299 -11 329 345 73 0 chr9 82926869 82926979 -59344465 + L2 LINE L2 3151 3268 -4 460 284 119 0 chr9 82927346 82927522 -59343922 - MIR SINE MIR -10 252 56 2081 118 0 0 chr9 82927561 82927864 -59343580 + AluSx SINE Alu 5 307 0 2228 78 60 0 chr9 82927920 82928204 -59343240 + AluY SINE Alu 1 301 -10 193 299 82 88 chr9 82928204 82928351 -59343093 + MER5A DNA MER1_type 44 189 0 316 200 111 52 chr9 82928420 82928583 -59342861 - L1M4 LINE L1 -1191 4955 4781 2307 111 0 0 chr9 82929109 82929407 -59342037 + AluSc SINE Alu 1 298 -11 1978 114 18 0 chr9 82929536 82929848 -59341596 + AluSg1 SINE Alu 1 317 0 181 302 0 0 chr9 82929906 82929959 -59341485 - MIR SINE MIR -69 139 87 297 0 0 0 chr9 82932171 82932204 -59339240 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 299 274 14 0 chr9 82933704 82933777 -59337667 - LTR45 LTR ERV1 -60 465 392 21 0 0 0 chr9 82934216 82934237 -59337207 + AT_rich Low_complexity Low_complexity 1 21 0 2389 126 26 3 chr9 82934368 82934758 -59336686 - LTR56 LTR ERV1 0 445 47 266 219 31 0 chr9 82935217 82935281 -59336163 - L1ME1 LINE L1 -17 6149 6084 2167 123 66 11 chr9 82935286 82935742 -59335702 + LTR24C LTR ERV1 1 507 -128 189 0 0 0 chr9 82935744 82935765 -59335679 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2307 90 3 0 chr9 82935769 82936059 -59335385 - AluSx SINE Alu -21 291 1 2120 223 60 28 chr9 82937076 82937649 -59333795 - MLT1E LTR MaLR 0 593 1 636 299 111 38 chr9 82937965 82938416 -59333028 - MLT1K LTR MaLR -92 496 13 292 233 165 10 chr9 82939099 82939202 -59332242 - L2 LINE L2 0 3313 3195 2443 67 0 10 chr9 82939970 82940282 -59331162 - AluY SINE Alu 0 311 3 2502 64 0 13 chr9 82941241 82941554 -59329890 + AluY SINE Alu 1 309 -2 241 170 57 19 chr9 82941567 82941620 -59329824 + Tigger5 DNA MER2_type 1 55 -2268 * 421 206 0 0 chr9 82941589 82941662 -59329782 + Tigger5 DNA MER2_type 2251 2323 0 5196 123 36 2 chr9 82941937 82942751 -59328693 - L1PA16 LINE L1 -9 6157 5317 2304 226 100 10 chr9 82943418 82943997 -59327447 - L1MC4 LINE L1 -954 7088 6458 4720 205 57 19 chr9 82944353 82944795 -59326649 - L1MD1 LINE L1 0 6242 5818 581 61 12 0 chr9 82944795 82944877 -59326567 + (TA)n Simple_repeat Simple_repeat 2 84 0 4720 205 57 19 chr9 82944877 82946498 -59324946 - L1MD1 LINE L1 -424 5818 4243 301 77 0 0 chr9 82946512 82946551 -59324893 - AluS SINE Alu -237 66 28 2461 81 0 0 chr9 82947307 82947617 -59323827 + AluY SINE Alu 2 311 0 357 239 23 11 chr9 82947676 82947764 -59323680 + MIR SINE MIR 63 151 -111 3091 106 24 2 chr9 82948692 82949117 -59322327 - MER57B LTR ERV1 0 434 1 2823 156 171 10 chr9 82949504 82950082 -59321362 - LTR51 LTR ERV1 0 671 1 2261 119 3 0 chr9 82955579 82955889 -59315555 + AluY SINE Alu 1 311 0 275 266 289 16 chr9 82956143 82956271 -59315173 - MIR3 SINE MIR -21 187 25 791 163 14 0 chr9 82956471 82956612 -59314832 + L1MA10 LINE L1 6179 6321 -13 960 129 0 0 chr9 82956622 82956754 -59314690 + AluSq/x SINE Alu 1 132 -180 295 243 0 107 chr9 82956863 82956966 -59314478 + MLT1H LTR MaLR 349 440 -109 23 0 0 0 chr9 82957014 82957037 -59314407 + AT_rich Low_complexity Low_complexity 1 23 0 2353 124 0 0 chr9 82957076 82957432 -59314012 - MER47A DNA MER2_type 0 366 11 360 179 0 0 chr9 82957428 82957484 -59313960 + MER47A DNA MER2_type 311 366 0 * 2068 126 0 10 chr9 82958721 82959022 -59312422 + AluSx SINE Alu 1 298 -14 462 222 9 9 chr9 82959034 82959142 -59312302 + L1MDa LINE L1 18 125 -6415 846 181 0 0 chr9 82959150 82959277 -59312167 - FLAM_C SINE Alu -16 127 1 1118 234 7 22 chr9 82959288 82959561 -59311883 + L1MDa LINE L1 122 390 -6150 * 1331 201 23 15 chr9 82959559 82959952 -59311492 + L1MDa LINE L1 1078 1473 -5067 377 276 134 15 chr9 82960347 82960481 -59310963 + L2 LINE L2 3118 3267 -5 662 230 80 35 chr9 82960835 82961061 -59310383 - LTR16A1 LTR ERVL -5 452 217 542 245 7 39 chr9 82961323 82961478 -59309966 + MER5B DNA MER1_type 5 154 -24 241 389 94 3 chr9 82961492 82961780 -59309664 - L2 LINE L2 -571 2743 2430 195 333 0 0 chr9 82962472 82962529 -59308915 - MIR SINE MIR -96 166 110 279 286 41 31 chr9 82962752 82962898 -59308546 - MIR SINE MIR -9 253 107 2045 100 4 0 chr9 82963000 82963260 -59308184 + AluSq SINE Alu 1 261 -52 820 171 32 42 chr9 82963269 82963485 -59307959 + L1MB8 LINE L1 5959 6172 -6 363 295 107 0 chr9 82964030 82964142 -59307302 - L2 LINE L2 -36 3236 3113 229 353 16 52 chr9 82964434 82964628 -59306816 - MIR SINE MIR -56 206 21 2497 77 0 3 chr9 82965043 82965355 -59306089 + AluY SINE Alu 1 311 0 351 227 143 34 chr9 82965355 82965474 -59305970 - HAL1b LINE L1 -479 869 738 1060 160 0 40 chr9 82965565 82965765 -59305679 + MER3 DNA MER1_type 2 193 -16 319 150 280 30 chr9 82965871 82965971 -59305473 - HAL1b LINE L1 -849 499 375 7116 56 1 2 chr9 82966072 82967716 -59303728 + L1PA5 LINE L1 4510 6148 -6 317 389 6 13 chr9 82968990 82969147 -59302297 + L1MEd LINE L1 3 158 -5961 1787 124 29 22 chr9 82969150 82969464 -59301980 - Tigger3(Golem) DNA MER2_type -1 3028 2713 2429 61 0 19 chr9 82969987 82970298 -59301146 - AluY SINE Alu -6 305 1 30 0 0 0 chr9 82970344 82970374 -59301070 + AT_rich Low_complexity Low_complexity 1 30 0 273 128 0 0 chr9 82970385 82970424 -59301020 - L1PA10 LINE L1 -12 6156 6118 2155 125 0 0 chr9 82970424 82970721 -59300723 - AluSc SINE Alu -12 297 1 3986 194 35 46 chr9 82970722 82970996 -59300448 + L1MB3 LINE L1 4527 4802 -1381 2201 98 11 0 chr9 82970996 82971272 -59300172 + AluSg SINE Alu 24 302 -8 3986 194 35 46 chr9 82971272 82972684 -59298760 + L1MB3 LINE L1 4802 6181 -2 1402 222 49 22 chr9 82973180 82973586 -59297858 - L1MCb LINE L1 -5320 725 309 1732 148 10 41 chr9 82973668 82973988 -59297456 + AluJo SINE Alu 1 311 0 507 85 37 0 chr9 82974060 82974142 -59297302 - LTR56 LTR ERV1 -123 322 238 2544 78 0 0 chr9 82974142 82974450 -59296994 + AluY SINE Alu 1 308 -3 1687 203 8 16 chr9 82974450 82974819 -59296625 - MER44D DNA MER2_type -184 421 1 249 324 0 14 chr9 82974882 82974956 -59296488 - MIR SINE MIR -103 105 33 1260 167 62 22 chr9 82975092 82975367 -59296077 - L1MC1 LINE L1 -2 6331 6046 658 101 5 2 chr9 82975385 82975507 -59295937 - L1MC1 LINE L1 -398 5935 5812 2540 141 47 12 chr9 82975581 82976069 -59295375 - L1MA9 LINE L1 -21 6291 5787 904 153 31 18 chr9 82976118 82976341 -59295103 - L1MC1 LINE L1 -745 5401 5176 2070 149 84 3 chr9 82976849 82977190 -59294254 + MLT2D LTR ERVL 1 378 -36 192 40 0 0 chr9 82977190 82977215 -59294229 + (CA)n Simple_repeat Simple_repeat 2 26 0 2070 149 84 3 chr9 82977215 82977256 -59294188 + MLT2D LTR ERVL 378 414 0 192 152 0 0 chr9 82977268 82977301 -59294143 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 * 491 136 0 11 chr9 82977300 82977388 -59294056 + (CA)n Simple_repeat Simple_repeat 2 88 0 419 128 12 68 chr9 82977429 82977778 -59293666 + (TA)n Simple_repeat Simple_repeat 1 329 0 223 231 22 44 chr9 82977784 82977875 -59293569 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 384 163 39 28 chr9 82977875 82978053 -59293391 + (TA)n Simple_repeat Simple_repeat 1 180 0 1996 114 33 112 chr9 82978282 82978341 -59293103 + L1PA15 LINE L1 5771 5833 -332 1829 120 11 14 chr9 82978341 82978649 -59292795 + AluSq SINE Alu 1 307 0 1996 114 33 112 chr9 82978649 82979009 -59292435 + L1PA15 LINE L1 5833 6158 -7 549 283 199 40 chr9 82980121 82980632 -59290812 - L2 LINE L2 -3 3310 2709 731 276 16 41 chr9 82981248 82981491 -59289953 + MIR SINE MIR 26 262 0 237 315 17 55 chr9 82981475 82981599 -59289845 - MIR SINE MIR -63 145 42 * 1257 195 87 3 chr9 82981721 82982153 -59289291 - Charlie1b DNA MER1_type -24 499 1 194 306 48 16 chr9 82982925 82982987 -59288457 - L2 LINE L2 0 3272 3209 1745 142 9 71 chr9 82984153 82984477 -59286967 + AluJb SINE Alu 1 304 -8 30 0 0 0 chr9 82984690 82984720 -59286724 + AT_rich Low_complexity Low_complexity 1 30 0 5538 42 34 3 chr9 82984720 82985454 -59285990 - L1PA5 LINE L1 -8 6146 5390 23 0 0 0 chr9 82985618 82985641 -59285803 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr9 82988084 82988123 -59283321 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr9 82988354 82988399 -59283045 + AT_rich Low_complexity Low_complexity 1 45 0 2193 95 0 17 chr9 82989273 82989568 -59281876 + AluY SINE Alu 1 290 -21 180 0 0 0 chr9 82989568 82989588 -59281856 + (TA)n Simple_repeat Simple_repeat 2 21 0 183 42 0 0 chr9 82990089 82990113 -59281331 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 325 278 195 39 chr9 82990286 82990491 -59280953 + MIR SINE MIR 20 256 -6 229 288 63 91 chr9 82990988 82991179 -59280265 + MIR3 SINE MIR 4 181 -68 466 278 32 0 chr9 82991264 82991390 -59280054 + MER5B DNA MER1_type 1 130 -48 214 304 0 0 chr9 82992710 82992779 -59278665 + CT-rich Low_complexity Low_complexity 1 69 0 230 280 40 13 chr9 82994599 82994674 -59276770 - MER5B DNA MER1_type -101 77 1 400 283 255 14 chr9 82994690 82994835 -59276609 + MER5A DNA MER1_type 10 189 0 331 343 77 14 chr9 82994835 82994978 -59276466 - MIR3 SINE MIR -37 171 20 252 0 0 0 chr9 82995249 82995277 -59276167 + (TG)n Simple_repeat Simple_repeat 2 29 0 1018 127 0 0 chr9 82995277 82995419 -59276025 - AluSg/x SINE Alu -34 278 137 24 0 0 0 chr9 82995469 82995493 -59275951 + AT_rich Low_complexity Low_complexity 1 24 0 604 324 38 25 chr9 82996550 82996868 -59274576 - MER102b DNA MER1_type -16 325 4 363 295 107 0 chr9 82997015 82997127 -59274317 - L2 LINE L2 -36 3236 3113 229 355 16 51 chr9 82997419 82997619 -59273825 - MIR SINE MIR -56 206 15 2505 74 0 3 chr9 82998028 82998340 -59273104 + AluY SINE Alu 1 311 0 354 345 55 36 chr9 82998404 82998624 -59272820 - MIR SINE MIR -11 251 28 309 253 44 11 chr9 82999289 82999380 -59272064 - L2 LINE L2 0 3313 3220 23 33 0 0 chr9 82999475 82999505 -59271939 + AT_rich Low_complexity Low_complexity 1 30 0 1384 110 0 6 chr9 82999596 82999778 -59271666 - AluSg/x SINE Alu -12 298 118 1615 174 38 7 chr9 83000474 83000767 -59270677 - AluJo SINE Alu -9 303 2 401 220 10 10 chr9 83001438 83001538 -59269906 + MER103 DNA DNA 1 100 -66 5987 92 7 7 chr9 83001698 83001933 -59269511 - L1PA16 LINE L1 -8 7596 7362 1465 124 5 0 chr9 83001933 83002151 -59269293 - AluY SINE Alu -2 309 91 5987 92 7 7 chr9 83002151 83003284 -59268160 - L1PA16 LINE L1 -241 7363 6225 5318 205 15 121 chr9 83003284 83004378 -59267066 - L1PA16 LINE L1 -2043 5541 4333 254 211 0 0 chr9 83004378 83004430 -59267014 + LTR30 LTR ERV1 1 52 -670 5318 205 15 121 chr9 83004430 83004696 -59266748 - L1PA16 LINE L1 -3251 4333 4040 297 233 11 0 chr9 83004696 83004786 -59266658 + LTR30 LTR ERV1 552 642 -80 5318 205 15 121 chr9 83004786 83005694 -59265750 - L1PA16 LINE L1 -3544 4040 3848 1997 132 7 26 chr9 83005694 83006004 -59265440 - AluSg SINE Alu -6 304 1 5318 205 15 121 chr9 83006004 83007445 -59263999 - L1PA16 LINE L1 -3736 3848 2256 434 318 7 0 chr9 83008167 83008318 -59263126 - L1PA16 LINE L1 -5276 2298 2147 997 356 20 27 chr9 83008342 83008932 -59262512 - L1PA16 LINE L1 -6200 1374 789 209 263 128 60 chr9 83009525 83009658 -59261786 + L3 LINE CR1 487 628 -949 923 146 0 150 chr9 83010171 83010417 -59261027 - MER3 DNA MER1_type 0 209 1 2361 81 10 0 chr9 83010620 83010916 -59260528 - AluY SINE Alu -12 299 1 1780 142 13 25 chr9 83010926 83011243 -59260201 - L1PA15 LINE L1 0 6165 5853 291 28 0 0 chr9 83012641 83012677 -59258767 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 188 214 8 199 chr9 83012867 83012998 -59258446 - L2 LINE L2 -160 3112 3007 6685 148 16 35 chr9 83013492 83014746 -59256698 + Tigger3b DNA MER2_type 1 1230 -1 1214 210 94 86 chr9 83016259 83016378 -59255066 + MLT1D LTR MaLR 1 118 -387 2286 94 0 10 chr9 83016378 83016676 -59254768 - AluY SINE Alu -16 295 1 1214 210 94 86 chr9 83016676 83017057 -59254387 + MLT1D LTR MaLR 118 505 0 214 233 23 0 chr9 83018053 83018096 -59253348 - L2 LINE L2 -28 3244 3201 276 268 0 0 chr9 83018851 83018907 -59252537 + L2 LINE L2 3250 3305 -8 503 296 43 55 chr9 83019391 83019644 -59251800 - MIR SINE MIR 0 262 13 254 314 151 25 chr9 83019745 83019904 -59251540 - MIR SINE MIR -76 186 8 346 317 35 14 chr9 83019918 83020063 -59251381 - MIR SINE MIR -15 247 100 948 189 57 0 chr9 83020491 83020666 -59250778 - MER5A DNA MER1_type -1 188 4 371 243 28 65 chr9 83024194 83024301 -59247143 - MER91C DNA MER1_type -1 139 37 1770 65 0 5 chr9 83025121 83025361 -59246083 + AluY SINE Alu 66 304 0 247 282 124 34 chr9 83025797 83026059 -59245385 - LTR16C LTR ERVL -177 314 6 326 372 41 56 chr9 83026294 83026635 -59244809 - L2 LINE L2 -18 3254 2919 283 152 15 15 chr9 83026733 83026799 -59244645 + (TA)n Simple_repeat Simple_repeat 1 66 0 185 187 133 40 chr9 83026952 83027027 -59244417 + L3 LINE CR1 1058 1139 -438 247 235 17 25 chr9 83027485 83027604 -59243840 - HAL1b LINE L1 -21 1327 1210 333 244 82 69 chr9 83027635 83027834 -59243610 - HAL1b LINE L1 -288 1060 854 2486 77 3 3 chr9 83027834 83028145 -59243299 + AluY SINE Alu 1 311 0 333 244 82 69 chr9 83028145 83028264 -59243180 - HAL1b LINE L1 -494 854 738 1060 160 0 40 chr9 83028355 83028555 -59242889 + MER3 DNA MER1_type 2 193 -16 352 166 276 21 chr9 83028650 83028767 -59242677 - HAL1b LINE L1 -849 499 373 373 277 80 0 chr9 83028960 83029072 -59242372 - MIR SINE MIR -102 160 40 1770 180 3 13 chr9 83029208 83029514 -59241930 - AluJb SINE Alu -9 303 1 2299 88 0 10 chr9 83029571 83029879 -59241565 + AluSx SINE Alu 1 305 -7 2348 103 0 0 chr9 83030164 83030475 -59240969 - AluSp SINE Alu -2 311 1 387 89 0 0 chr9 83031248 83031304 -59240140 + (TG)n Simple_repeat Simple_repeat 2 57 0 381 241 71 45 chr9 83031991 83032103 -59239341 - L2 LINE L2 -19 3294 3180 336 330 25 0 chr9 83032227 83032345 -59239099 - MIR SINE MIR -56 206 86 5831 162 20 3 chr9 83032397 83033534 -59237910 + L1MC1 LINE L1 5177 6333 0 219 368 21 67 chr9 83034707 83034900 -59236544 + MIR3 SINE MIR 22 205 -3 2367 84 0 3 chr9 83035100 83035399 -59236045 + AluY SINE Alu 1 298 -13 231 238 12 71 chr9 83035411 83035495 -59235949 - MIR SINE MIR -73 189 111 319 291 137 8 chr9 83035544 83035661 -59235783 + MIR SINE MIR 23 154 -108 1601 146 90 31 chr9 83035734 83036022 -59235422 + AluJo SINE Alu 1 305 -7 235 291 0 0 chr9 83036594 83036649 -59234795 + (CTGGGG)n Simple_repeat Simple_repeat 6 60 0 205 325 113 17 chr9 83037745 83037842 -59233602 + MIR SINE MIR 34 127 -81 666 288 69 27 chr9 83038213 83038546 -59232898 - MLT1H LTR MaLR -191 358 12 791 258 16 0 chr9 83038733 83038919 -59232525 + MER5A DNA MER1_type 1 189 0 23 54 0 0 chr9 83039560 83039597 -59231847 + AT_rich Low_complexity Low_complexity 1 37 0 198 71 0 0 chr9 83039604 83039632 -59231812 + (TATAA)n Simple_repeat Simple_repeat 5 32 0 265 342 56 41 chr9 83040416 83040612 -59230832 + L2 LINE L2 2451 2649 -665 799 208 66 43 chr9 83040921 83041240 -59230204 + Charlie7 DNA MER1_type 310 689 -1923 3098 211 46 20 chr9 83041480 83041506 -59229938 - L1M4 LINE L1 -896 5250 5226 2992 212 15 20 chr9 83041506 83042162 -59229282 - MER82 DNA MER2_type 0 653 1 3098 211 46 20 chr9 83042162 83043020 -59228424 - L1M4 LINE L1 -920 5226 4343 201 281 34 5 chr9 83043062 83043135 -59228309 + L2 LINE L2 2896 2971 -301 3413 118 30 6 chr9 83043169 83043430 -59228014 + L1MA9 LINE L1 5522 5775 -537 312 27 0 0 chr9 83043430 83043467 -59227977 + (CA)n Simple_repeat Simple_repeat 1 37 0 3413 118 30 6 chr9 83043467 83043888 -59227556 + L1MA9 LINE L1 5775 6308 -4 206 158 26 0 chr9 83043951 83043989 -59227455 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 543 276 8 102 chr9 83044042 83044296 -59227148 + MIR SINE MIR 7 236 -26 197 0 0 67 chr9 83045773 83045803 -59225641 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 294 336 186 0 chr9 83045924 83046037 -59225407 + L2 LINE L2 3137 3270 -2 185 359 26 13 chr9 83046254 83046332 -59225112 - MIR SINE MIR -85 123 45 267 31 0 0 chr9 83047469 83047501 -59223943 + (CA)n Simple_repeat Simple_repeat 2 33 0 327 308 101 2 chr9 83047797 83047955 -59223489 - MIR3 SINE MIR -63 145 13 366 264 0 23 chr9 83048005 83048092 -59223352 + L2 LINE L2 3171 3255 -17 309 360 81 15 chr9 83048822 83049019 -59222425 + MIR SINE MIR 29 238 -24 251 351 64 0 chr9 83049070 83049164 -59222280 + MIR SINE MIR 52 151 -111 372 200 12 12 chr9 83050874 83050959 -59220485 - MLT1K LTR MaLR -2 586 502 356 254 0 8 chr9 83053036 83053166 -59218278 + (TA)n Simple_repeat Simple_repeat 1 129 0 2302 109 10 0 chr9 83054650 83054953 -59216491 + AluSx SINE Alu 1 306 -6 2376 153 20 46 chr9 83055700 83056244 -59215200 - L1MB7 LINE L1 0 6184 5655 299 146 0 0 chr9 83056246 83056294 -59215150 + MER58A DNA MER1_type 41 88 -19 1254 249 196 14 chr9 83056508 83056946 -59214498 - L1M4b LINE L1 -6308 551 34 11219 204 58 31 chr9 83057152 83059781 -59211663 - L1MA9 LINE L1 0 7731 5175 2410 100 0 0 chr9 83059781 83060091 -59211353 - AluY SINE Alu 0 311 2 11219 204 58 31 chr9 83060091 83060221 -59211223 - L1MA9 LINE L1 -2556 5175 5050 1949 146 0 13 chr9 83060221 83060522 -59210922 - AluSx SINE Alu -15 297 1 11219 204 58 31 chr9 83060522 83061979 -59209465 - L1MA9 LINE L1 -2681 5050 3634 2320 88 7 0 chr9 83061979 83062273 -59209171 - AluY SINE Alu -15 296 1 11219 204 58 31 chr9 83062273 83062430 -59209014 - L1MA9 LINE L1 -4097 3634 3483 1527 219 3 7 chr9 83062430 83062727 -59208717 - AluJo SINE Alu -16 296 1 11219 204 58 31 chr9 83062727 83062832 -59208612 - L1MA9 LINE L1 -4248 3483 2969 210 306 118 0 chr9 83063462 83063547 -59207897 - MIR SINE MIR -148 114 20 327 222 28 0 chr9 83063927 83063999 -59207445 + MIR SINE MIR 189 262 0 238 248 110 35 chr9 83064081 83064226 -59207218 + HAL1b LINE L1 761 916 -432 1256 261 86 29 chr9 83064654 83064674 -59206770 - MLT1H LTR MaLR -37 512 495 2057 106 40 13 chr9 83064674 83064976 -59206468 - AluSg SINE Alu 0 310 1 1256 261 86 29 chr9 83064976 83065433 -59206011 - MLT1H LTR MaLR -54 495 8 982 296 91 37 chr9 83065827 83066507 -59204937 - HAL1 LINE L1 -698 1809 1093 * 1974 196 6 0 chr9 83066501 83066858 -59204586 - L1PA16 LINE L1 -7 6159 5801 21 0 0 0 chr9 83067867 83067888 -59203556 + AT_rich Low_complexity Low_complexity 1 21 0 391 333 76 30 chr9 83068192 83068390 -59203054 - L2 LINE L2 -826 2488 2282 844 125 56 14 chr9 83068390 83068534 -59202910 - Tigger7 DNA MER2_type 0 2487 2338 4727 109 306 123 chr9 83068537 83069969 -59201475 - pTR5 LTR ERV1 0 2438 745 353 42 0 0 chr9 83069969 83070017 -59201427 - Tigger7 DNA MER2_type -144 2343 2296 2383 87 7 0 chr9 83070017 83070315 -59201129 + AluY SINE Alu 1 300 -11 493 113 0 24 chr9 83070548 83070642 -59200802 - HSAT5 Satellite Satellite 0 91 1 2043 125 13 3 chr9 83077608 83077913 -59193531 + AluSx SINE Alu 1 308 -4 369 0 0 0 chr9 83077914 83077955 -59193489 + (CA)n Simple_repeat Simple_repeat 2 42 0 224 221 0 4 chr9 83079422 83079481 -59191963 + MIR SINE MIR 102 160 -48 416 309 7 7 chr9 83079548 83079687 -59191757 - MIR SINE MIR 0 262 124 5987 153 10 2 chr9 83079730 83081222 -59190222 - L1PB3 LINE L1 0 6154 4650 287 262 150 86 chr9 83083029 83083262 -59188182 + MLT1H LTR MaLR 302 549 0 2228 88 0 14 chr9 83083275 83083572 -59187872 - AluY SINE Alu -18 293 1 2440 75 0 0 chr9 83083616 83083924 -59187520 - AluY SINE Alu -3 308 1 413 315 94 30 chr9 83085231 83085434 -59186010 + MIR SINE MIR 34 249 -13 201 74 0 0 chr9 83086777 83086804 -59184640 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2539 59 0 0 chr9 83086841 83087146 -59184298 - AluY SINE Alu -6 305 1 614 298 135 52 chr9 83087779 83088276 -59183168 - MLT1F LTR MaLR -4 538 1 466 294 24 0 chr9 83088546 83088672 -59182772 - MER94 DNA DNA -5 129 1 226 227 45 15 chr9 83088691 83088757 -59182687 - LTR67 LTR ERVL -488 69 2 280 273 15 0 chr9 83093117 83093183 -59178261 + L2 LINE L2 3241 3307 -6 3319 244 29 17 chr9 83093301 83094129 -59177315 + L1MEc LINE L1 37 874 -5522 2470 253 66 64 chr9 83094770 83096395 -59175049 + L1M4 LINE L1 779 2505 -4320 389 221 0 114 chr9 83096390 83096548 -59174896 + L1MEc LINE L1 8 147 -6249 * 572 277 3 0 chr9 83096551 83096726 -59174718 + L1MA10 LINE L1 5994 6330 -4 266 333 81 0 chr9 83097554 83097653 -59173791 - L2 LINE L2 -2 3311 3205 2247 174 52 10 chr9 83099131 83099533 -59171911 + MSTB LTR MaLR 1 419 -7 1993 118 3 71 chr9 83099676 83100022 -59171422 + AluSx SINE Alu 1 324 0 306 252 87 39 chr9 83100073 83100176 -59171268 + MER91C DNA MER1_type 2 109 -31 238 374 57 23 chr9 83101876 83102138 -59169306 + L2 LINE L2 2231 2501 -813 950 270 151 38 chr9 83103186 83103598 -59167846 + L2 LINE L2 2476 2840 -473 1935 122 4 0 chr9 83103598 83103869 -59167575 - AluY SINE Alu -3 308 37 950 270 151 38 chr9 83103869 83104200 -59167244 + L2 LINE L2 2840 3297 -16 327 281 205 36 chr9 83104291 83104594 -59166850 - L2 LINE L2 -4 3309 2956 216 0 0 0 chr9 83104720 83104744 -59166700 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 3785 33 7 0 chr9 83104760 83105189 -59166255 - L1PA7 LINE L1 -7 6147 5716 7238 67 3 3 chr9 83105189 83106576 -59164868 - L1P3 LINE L1 -366 5788 4404 408 230 40 87 chr9 83106814 83106940 -59164504 + MER91B DNA MER1_type 1 120 -70 292 225 28 0 chr9 83107050 83107121 -59164323 + L2 LINE L2 3241 3313 0 6278 121 11 10 chr9 83107264 83108632 -59162812 + L1PA16 LINE L1 4796 6162 -4 3004 142 6 29 chr9 83108680 83109158 -59162286 + MLT1C LTR MaLR 1 467 0 309 303 99 6 chr9 83109167 83109329 -59162115 - L2 LINE L2 -220 3093 2917 185 338 159 13 chr9 83109677 83109828 -59161616 - MIR3 SINE MIR -20 188 16 811 221 0 122 chr9 83110489 83110610 -59160834 + MIR SINE MIR 7 141 -121 1902 106 0 87 chr9 83110610 83110921 -59160523 + AluSg SINE Alu 1 284 -26 270 81 0 0 chr9 83110921 83110958 -59160486 + (CA)n Simple_repeat Simple_repeat 2 38 0 811 221 0 122 chr9 83110958 83111097 -59160347 + MIR SINE MIR 139 236 -26 23 0 0 0 chr9 83111789 83111812 -59159632 + AT_rich Low_complexity Low_complexity 1 23 0 2444 4 0 0 chr9 83111890 83112154 -59159290 + AluYa5 SINE Alu 35 298 -13 396 0 0 0 chr9 83112375 83112419 -59159025 + (TG)n Simple_repeat Simple_repeat 2 45 0 2247 97 3 16 chr9 83114257 83114568 -59156876 - AluSc SINE Alu -2 307 1 452 191 198 45 chr9 83114816 83114973 -59156471 + MER5A DNA MER1_type 9 189 0 2458 160 22 7 chr9 83115072 83115522 -59155922 - MSTB2 LTR MaLR 0 457 1 365 128 87 88 chr9 83116378 83116516 -59154928 - L1MD3 LINE L1 0 8042 7916 201 233 0 0 chr9 83116527 83116570 -59154874 + CT-rich Low_complexity Low_complexity 2 44 0 273 98 0 0 chr9 83116571 83116612 -59154832 + (TG)n Simple_repeat Simple_repeat 2 42 0 2019 241 91 68 chr9 83116625 83117043 -59154401 - L1MC4 LINE L1 -134 7908 7501 2591 62 0 0 chr9 83117043 83117351 -59154093 + AluY SINE Alu 1 308 -3 2019 241 91 68 chr9 83117351 83118074 -59153370 - L1MC4 LINE L1 -541 7501 6741 5661 158 30 8 chr9 83118114 83119235 -59152209 - L1MC1 LINE L1 -5 6746 5597 2414 85 0 0 chr9 83119254 83119560 -59151884 - AluY SINE Alu -5 306 1 601 227 125 48 chr9 83119562 83119875 -59151569 - L1MC1 LINE L1 -2377 4187 3851 2845 239 64 25 chr9 83119892 83120042 -59151402 - L1MC1 LINE L1 -2974 3590 3447 1992 101 0 4 chr9 83120042 83120300 -59151144 + AluSc SINE Alu 39 295 -14 2845 239 64 25 chr9 83120300 83121596 -59149848 - L1MC1 LINE L1 -3117 3447 2114 371 211 11 0 chr9 83121597 83121692 -59149752 + (TA)n Simple_repeat Simple_repeat 1 96 0 832 191 0 0 chr9 83121725 83121872 -59149572 - FRAM SINE Alu -10 166 20 1543 258 93 43 chr9 83121929 83122623 -59148821 - L1MC1 LINE L1 -4729 1835 1177 2083 117 10 26 chr9 83122623 83122932 -59148512 + AluSx SINE Alu 1 304 -8 1543 258 93 43 chr9 83122932 83123569 -59147875 - L1MC1 LINE L1 -5387 1177 414 465 322 87 67 chr9 83123758 83124200 -59147244 - L1MC1 LINE L1 -5629 494 2 24 53 0 0 chr9 83124632 83124670 -59146774 + AT_rich Low_complexity Low_complexity 1 38 0 1171 199 0 30 chr9 83124802 83125038 -59146406 + AluJo SINE Alu 83 311 -1 211 284 211 11 chr9 83125059 83125154 -59146290 + MIR3 SINE MIR 10 123 -85 3065 174 4 2 chr9 83126272 83126812 -59144632 + MER44D DNA MER2_type 8 603 -2 310 295 42 58 chr9 83127681 83127871 -59143573 - MER5A DNA MER1_type -2 187 1 369 335 77 41 chr9 83129182 83129376 -59142068 + L2 LINE L2 3072 3272 0 701 286 154 19 chr9 83129620 83130355 -59141089 - HAL1 LINE L1 -898 1609 776 432 224 33 46 chr9 83130954 83131106 -59140338 - MER103 DNA DNA -14 152 3 21 0 0 0 chr9 83131210 83131231 -59140213 + AT_rich Low_complexity Low_complexity 1 21 0 241 204 11 32 chr9 83131681 83131774 -59139670 + CT-rich Low_complexity Low_complexity 6 96 0 459 243 114 88 chr9 83132376 83132648 -59138796 - L2 LINE L2 0 3313 3035 923 341 0 8 chr9 83132689 83132956 -59138488 - L2 LINE L2 -243 3070 2806 1688 73 4 4 chr9 83132971 83133205 -59138239 + THE1B-int LTR MaLR 1347 1580 0 2644 102 3 3 chr9 83133205 83133569 -59137875 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr9 83134238 83134270 -59137174 + AT_rich Low_complexity Low_complexity 1 32 0 1904 175 15 3 chr9 83134270 83134612 -59136832 - MER7A DNA MER2_type -2 344 1 3810 136 67 8 chr9 83134677 83135348 -59136096 - MER50 LTR ERV1 -23 711 1 3019 190 49 32 chr9 83135554 83136269 -59135175 + LTR8A LTR ERV1 1 727 0 4114 161 45 14 chr9 83136424 83136690 -59134754 + LTR1B LTR ERV1 1 257 -569 2106 116 21 43 chr9 83136690 83137062 -59134382 - THE1B LTR MaLR 0 364 1 4114 161 45 14 chr9 83137062 83137594 -59133850 + LTR1B LTR ERV1 257 824 -2 256 289 11 11 chr9 83137695 83137785 -59133659 - MER46C DNA MER2_type 0 338 249 1565 178 58 67 chr9 83137786 83138250 -59133194 - MER31B LTR ERV1 0 661 1 332 201 101 15 chr9 83138250 83138416 -59133028 - MER46C DNA MER2_type -87 251 19 1718 165 71 51 chr9 83140556 83141023 -59130421 - MER31A LTR ERV1 -9 476 1 203 184 0 0 chr9 83141413 83141451 -59129993 + T-rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr9 83141927 83141955 -59129489 + AT_rich Low_complexity Low_complexity 1 28 0 352 250 100 10 chr9 83142304 83142404 -59129040 + L2 LINE L2 3201 3309 -4 433 146 10 21 chr9 83142603 83142699 -59128745 - MER53 DNA DNA -94 95 1 499 235 96 6 chr9 83142909 83143075 -59128369 + LTR16A1 LTR ERVL 275 455 -2 996 194 47 51 chr9 83143618 83144073 -59127371 - MLT1F1 LTR MaLR -10 557 17 2105 104 4 0 chr9 83144079 83144397 -59127047 - AluSg SINE Alu 0 319 1 654 262 30 6 chr9 83144641 83144809 -59126635 + MER5B DNA MER1_type 1 172 -6 794 208 84 84 chr9 83144850 83145048 -59126396 - LTR16C LTR ERVL 0 491 291 2193 137 3 0 chr9 83145048 83145355 -59126089 - AluSg SINE Alu -2 308 1 794 208 84 84 chr9 83145355 83145430 -59126014 - LTR16C LTR ERVL -199 292 218 226 312 43 51 chr9 83145597 83145735 -59125709 + MIR SINE MIR 118 254 -8 464 303 96 35 chr9 83145918 83146116 -59125328 + MIR SINE MIR 21 230 -32 236 268 170 18 chr9 83146434 83146546 -59124898 - MIR SINE MIR -4 258 130 648 182 0 0 chr9 83146547 83146657 -59124787 + FRAM SINE Alu 62 171 -5 1598 239 106 33 chr9 83146673 83147670 -59123774 - L1MCc LINE L1 -4887 1536 822 237 33 0 0 chr9 83147915 83147945 -59123499 + (TG)n Simple_repeat Simple_repeat 1 30 0 600 275 80 37 chr9 83147954 83148303 -59123141 - L1MCc LINE L1 -6026 397 34 227 304 54 0 chr9 83148350 83148406 -59123038 - MIR SINE MIR -191 71 13 545 233 191 23 chr9 83148759 83148974 -59122470 - MIR SINE MIR 0 262 12 846 225 12 16 chr9 83150291 83150540 -59120904 - L1 LINE L1 -796 6371 6124 * 2404 240 50 87 chr9 83150537 83152688 -59118756 - L1 LINE L1 -3786 3381 1618 3430 208 69 35 chr9 83153602 83154052 -59117392 + L1MB8 LINE L1 4322 4755 -1419 2486 85 0 0 chr9 83154052 83154357 -59117087 + AluY SINE Alu 1 305 -6 3430 208 69 35 chr9 83154357 83155051 -59116393 + L1MB8 LINE L1 4755 5494 -680 1339 132 5 15 chr9 83155065 83155262 -59116182 + AluSx SINE Alu 1 195 -117 2602 211 48 22 chr9 83155270 83155666 -59115778 + L1MB8 LINE L1 5495 5916 -262 2165 171 43 10 chr9 83155666 83156080 -59115364 + MSTA LTR MaLR 1 428 0 2602 211 48 22 chr9 83156080 83156350 -59115094 + L1MB8 LINE L1 5916 6178 0 2745 196 8 10 chr9 83156352 83156948 -59114496 + L1MB7 LINE L1 5320 5914 -270 1188 155 0 0 chr9 83156948 83157122 -59114322 - AluSg/x SINE Alu -5 305 132 2151 131 3 6 chr9 83157122 83157435 -59114009 - AluSx SINE Alu 0 312 1 960 216 30 0 chr9 83157454 83157686 -59113758 + L1MB7 LINE L1 5920 6158 -26 27593 105 8 13 chr9 83158062 83160702 -59110742 + L1PA7 LINE L1 1 2654 -3815 194 0 39 0 chr9 83160702 83160728 -59110716 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 27593 105 8 13 chr9 83160728 83164546 -59106898 + L1PA7 LINE L1 2654 6467 -2 1174 174 8 0 chr9 83164573 83164815 -59106629 + L1MA2 LINE L1 6057 6300 -4 2369 153 45 6 chr9 83164832 83165303 -59106141 + L1MB2 LINE L1 5657 6145 -26 384 260 55 72 chr9 83165334 83165515 -59105929 - MER20B DNA MER1_type -6 213 36 4128 166 39 4 chr9 83165909 83166737 -59104707 + L1MB8 LINE L1 5317 6173 -5 359 300 180 0 chr9 83167453 83167603 -59103841 + MER5A DNA MER1_type 10 186 -3 183 80 0 0 chr9 83167700 83167725 -59103719 + (TG)n Simple_repeat Simple_repeat 2 26 0 334 288 29 14 chr9 83167970 83168109 -59103335 + MLT1K LTR MaLR 448 588 0 6473 92 26 1 chr9 83168208 83169804 -59101640 - L1PA11 LINE L1 0 6174 4575 2994 232 48 22 chr9 83169824 83170609 -59100835 - L1PA12 LINE L1 -6194 1387 582 3409 157 48 0 chr9 83170728 83171335 -59100109 - L1MC1 LINE L1 0 6333 5698 283 236 34 11 chr9 83172038 83172127 -59099317 - MER103 DNA DNA -54 112 22 593 224 23 102 chr9 83173543 83173807 -59097637 - MLT1H LTR MaLR -4 545 303 825 240 138 0 chr9 83173924 83174170 -59097274 - MLT1H LTR MaLR -258 291 12 228 170 19 38 chr9 83174319 83174372 -59097072 + L2 LINE L2 3180 3231 -82 239 143 20 0 chr9 83176686 83176735 -59094709 + MLT1I LTR MaLR 81 130 -279 295 333 30 15 chr9 83179135 83179267 -59092177 + MIR SINE MIR 21 154 -108 2264 108 10 7 chr9 83179291 83179596 -59091848 + AluSq SINE Alu 1 306 -7 435 213 23 116 chr9 83180274 83180490 -59090954 - L2 LINE L2 -22 3291 3096 2787 193 12 12 chr9 83180496 83181237 -59090207 + L1PA13 LINE L1 1726 2479 -4318 2176 128 3 0 chr9 83181247 83181545 -59089899 - AluSq SINE Alu -14 299 1 2485 103 6 0 chr9 83181723 83182073 -59089371 - L1PA13 LINE L1 -19 6144 5793 314 98 0 0 chr9 83182073 83182117 -59089327 + L1PB3 LINE L1 6103 6153 -1 272 275 101 28 chr9 83182612 83182721 -59088723 + L2 LINE L2 3148 3264 -8 1510 197 28 18 chr9 83183029 83183313 -59088131 + AluJo SINE Alu 1 287 -25 22 35 0 0 chr9 83183504 83183533 -59087911 + AT_rich Low_complexity Low_complexity 1 29 0 2402 77 6 13 chr9 83183952 83184263 -59087181 + AluY SINE Alu 1 309 -2 2329 104 0 0 chr9 83184274 83184573 -59086871 + AluSg SINE Alu 1 299 -11 22 0 0 0 chr9 83185400 83185422 -59086022 + AT_rich Low_complexity Low_complexity 1 22 0 234 211 19 0 chr9 83185753 83185805 -59085639 + MER103 DNA DNA 68 120 -46 363 127 28 28 chr9 83185817 83185888 -59085556 - LTR16C LTR ERVL 0 491 421 470 302 110 30 chr9 83186080 83186580 -59084864 + HAL1 LINE L1 1674 2213 -294 1157 203 53 49 chr9 83186606 83186872 -59084572 + AluJo SINE Alu 9 275 -37 10783 204 60 14 chr9 83186947 83188864 -59082580 + L1 LINE L1 1 1830 -5019 1532 178 178 6 chr9 83188864 83189229 -59082215 - MSTA LTR MaLR 0 428 1 10783 204 60 14 chr9 83189229 83189374 -59082070 + L1 LINE L1 1830 1967 -4882 2125 110 7 0 chr9 83189374 83189683 -59081761 + AluSp SINE Alu 2 312 0 10783 204 60 14 chr9 83189683 83190019 -59081425 + L1 LINE L1 1967 2510 -4339 3944 87 19 2 chr9 83190058 83190599 -59080845 + L1PA8A LINE L1 5564 6113 -18 573 271 60 18 chr9 83193790 83193956 -59077488 - MIR3 SINE MIR -19 189 17 2365 94 3 10 chr9 83194323 83194630 -59076814 + AluSg SINE Alu 1 305 -5 1816 128 62 0 chr9 83194633 83194907 -59076537 + AluSg SINE Alu 3 293 -17 234 150 0 0 chr9 83194916 83194956 -59076488 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 256 131 33 33 chr9 83195231 83195292 -59076152 + L1MA2 LINE L1 5254 5314 -991 4334 133 11 16 chr9 83195331 83196120 -59075324 + L1MA2 LINE L1 5305 6089 -215 * 11317 127 10 46 chr9 83196114 83198582 -59072862 + L1P3 LINE L1 1 2468 -3993 270 285 105 17 chr9 83198937 83199109 -59072335 + MIR SINE MIR 63 249 -13 1829 157 191 22 chr9 83199801 83200204 -59071240 + MLT2B1 LTR ERVL 1 487 -33 243 0 0 0 chr9 83200204 83200231 -59071213 + (TG)n Simple_repeat Simple_repeat 2 28 0 1829 157 191 22 chr9 83200231 83200272 -59071172 + MLT2B1 LTR ERVL 487 520 0 1455 141 33 74 chr9 83200831 83201101 -59070343 + AluSx SINE Alu 53 311 -1 5532 157 50 4 chr9 83201101 83202828 -59068616 + L1M1 LINE L1 2543 4348 -3217 1592 208 32 48 chr9 83202828 83203270 -59068174 + L1 LINE L1 3090 3524 -3324 2400 87 0 0 chr9 83203275 83203574 -59067870 + AluY SINE Alu 1 299 -12 346 245 80 31 chr9 83203683 83203846 -59067598 - L1ME3A LINE L1 -264 5906 5736 472 300 82 32 chr9 83204136 83204599 -59066845 - HAL1 LINE L1 -1046 1461 976 4708 210 43 19 chr9 83204640 83205726 -59065718 + L1PA12 LINE L1 1 1112 -6469 405 242 92 26 chr9 83206024 83206177 -59065267 - MIR SINE MIR -27 235 73 531 190 57 25 chr9 83207342 83207500 -59063944 + L1M2a LINE L1 13 175 -6993 664 293 44 10 chr9 83208025 83208230 -59063214 - MIR SINE MIR -29 233 22 2511 77 0 10 chr9 83208888 83209199 -59062245 + AluY SINE Alu 1 308 -3 5018 118 23 5 chr9 83209199 83209966 -59061478 + THE1-int LTR MaLR 461 1244 -336 233 316 177 22 chr9 83210306 83210802 -59060642 + L1MEd LINE L1 268 840 -5279 446 378 15 15 chr9 83211392 83211651 -59059793 - ERVL LTR ERVL -4112 1652 1394 1299 98 0 0 chr9 83213668 83213851 -59057593 - L1PA11 LINE L1 -1 6173 5991 4184 131 44 1 chr9 83213851 83214873 -59056571 - L1PA11 LINE L1 -534 5640 4575 965 237 36 19 chr9 83214873 83215146 -59056298 - L1PA12 LINE L1 -6441 1140 627 349 262 57 20 chr9 83216813 83217002 -59054442 + MLT1J LTR MaLR 31 289 -302 853 232 76 38 chr9 83217372 83217411 -59054033 - MIR SINE MIR -6 256 220 2478 74 0 0 chr9 83217411 83217722 -59053722 - AluY SINE Alu 0 311 1 853 232 76 38 chr9 83217722 83217905 -59053539 - MIR SINE MIR -42 220 22 1952 100 4 25 chr9 83217905 83218186 -59053258 - AluSc SINE Alu -14 295 21 853 232 76 38 chr9 83218186 83218199 -59053245 - MIR SINE MIR -240 22 11 631 198 0 0 chr9 83218895 83219021 -59052423 - L1M1 LINE L1 -5493 2072 1947 255 311 25 93 chr9 83219180 83219341 -59052103 + HAL1 LINE L1 490 639 -1868 2297 208 21 8 chr9 83219532 83220007 -59051437 + MLT1D LTR MaLR 25 505 0 1139 275 102 45 chr9 83220017 83221092 -59050352 + HAL1 LINE L1 838 1974 -533 25 51 0 0 chr9 83221096 83221135 -59050309 + AT_rich Low_complexity Low_complexity 1 39 0 1477 253 73 32 chr9 83221202 83221882 -59049562 - MER20B DNA MER1_type -34 749 42 534 242 81 78 chr9 83222174 83222521 -59048923 + HAL1 LINE L1 2124 2471 -36 2661 126 9 30 chr9 83223667 83224104 -59047340 + MSTA LTR MaLR 1 428 0 1731 148 8 8 chr9 83224527 83224819 -59046625 - AluSx SINE Alu 0 314 23 246 327 44 18 chr9 83224831 83224944 -59046500 - L2 LINE L2 -5 3308 3193 32 57 0 0 chr9 83225711 83225764 -59045680 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr9 83225826 83225847 -59045597 + AT_rich Low_complexity Low_complexity 1 21 0 941 225 30 56 chr9 83226747 83227049 -59044395 + L1M4b LINE L1 931 1224 -5635 440 256 0 70 chr9 83227284 83227440 -59044004 + L1M4b LINE L1 1205 1349 -5510 * 10765 180 24 34 chr9 83227438 83229648 -59041796 + L1M1 LINE L1 11 2199 -5366 1478 120 39 22 chr9 83229648 83229968 -59041476 + THE1B LTR MaLR 1 346 -9 189 361 12 12 chr9 83230098 83230181 -59041263 - MIR3 SINE MIR -9 199 117 196 333 27 116 chr9 83230449 83230596 -59040848 + MER5A DNA MER1_type 56 189 0 285 51 0 0 chr9 83230811 83230850 -59040594 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 559 308 156 31 chr9 83230925 83231558 -59039886 + L2 LINE L2 2564 3271 -1 403 366 12 19 chr9 83233268 83233429 -59038015 - L1M3c LINE L1 -5981 160 1 1627 199 27 25 chr9 83233429 83233872 -59037572 + L1M4 LINE L1 4322 4765 -1381 2224 102 0 0 chr9 83233879 83234208 -59037236 + AluY SINE Alu 1 329 0 349 190 24 41 chr9 83234583 83234688 -59036756 - MLT1H LTR MaLR -34 515 426 255 284 53 42 chr9 83234721 83234816 -59036628 - MLT1H LTR MaLR -223 326 231 630 252 11 70 chr9 83235115 83235385 -59036059 + MLT1C LTR MaLR 214 467 0 270 301 52 67 chr9 83235400 83235593 -59035851 - L2 LINE L2 -231 3082 2893 185 338 159 13 chr9 83235905 83236056 -59035388 - MIR3 SINE MIR -20 188 16 811 221 0 122 chr9 83236717 83236838 -59034606 + MIR SINE MIR 7 141 -121 1908 107 0 84 chr9 83236838 83237148 -59034296 + AluSg SINE Alu 1 284 -26 270 81 0 0 chr9 83237148 83237185 -59034259 + (CA)n Simple_repeat Simple_repeat 2 38 0 811 221 0 122 chr9 83237185 83237324 -59034120 + MIR SINE MIR 139 236 -26 2363 19 0 0 chr9 83238116 83238379 -59033065 + AluYa5 SINE Alu 35 297 -14 360 0 0 0 chr9 83238600 83238640 -59032804 + (TG)n Simple_repeat Simple_repeat 2 41 0 476 361 66 35 chr9 83239158 83239585 -59031859 + L2 LINE L2 2853 3292 -21 351 370 36 36 chr9 83239634 83239942 -59031502 + L1M4 LINE L1 3334 3641 -2505 299 333 9 9 chr9 83240114 83240339 -59031105 + L1M4 LINE L1 3712 3936 -2210 534 233 38 15 chr9 83240475 83240608 -59030836 + MIR SINE MIR 97 232 -30 4534 176 33 19 chr9 83241503 83242924 -59028520 - L1P4 LINE L1 -532 5634 4198 321 259 0 49 chr9 83242958 83243001 -59028443 - MIR SINE MIR -35 227 188 660 268 89 0 chr9 83243001 83243191 -59028253 + MER63A DNA MER1_type 1 207 -3 321 259 0 49 chr9 83243191 83243228 -59028216 - MIR SINE MIR -74 188 151 641 217 106 12 chr9 83244669 83244830 -59026614 + MIR SINE MIR 5 180 -82 1243 277 62 3 chr9 83244987 83245355 -59026089 + LTR16C LTR ERVL 102 491 0 646 231 0 8 chr9 83246236 83246366 -59025078 + FLAM_A SINE Alu 1 129 -4 22 35 0 0 chr9 83246953 83246982 -59024462 + AT_rich Low_complexity Low_complexity 1 29 0 180 175 32 143 chr9 83248335 83248398 -59023046 + L2 LINE L2 3195 3250 -22 2192 158 24 7 chr9 83248517 83248936 -59022508 + L1PA16 LINE L1 5514 5939 -227 467 175 193 0 chr9 83248937 83249051 -59022393 + L1MB5 LINE L1 6031 6166 -8 1944 118 103 32 chr9 83249315 83249655 -59021789 - THE1B LTR MaLR 0 364 1 11104 94 25 11 chr9 83249655 83250742 -59020702 - THE1B-int LTR MaLR 0 1580 464 2315 107 0 0 chr9 83250742 83251050 -59020394 - AluY SINE Alu -3 308 1 11104 94 25 11 chr9 83251050 83251521 -59019923 - THE1B-int LTR MaLR -1116 464 1 2346 116 28 19 chr9 83251521 83251882 -59019562 - THE1B LTR MaLR 0 364 1 193 366 106 9 chr9 83252516 83252665 -59018779 + MIR SINE MIR 19 189 -68 21 0 0 0 chr9 83252700 83252721 -59018723 + AT_rich Low_complexity Low_complexity 1 21 0 377 323 106 11 chr9 83252878 83253067 -59018377 + MIR SINE MIR 12 218 -44 1973 137 38 32 chr9 83253700 83254072 -59017372 - THE1C LTR MaLR 0 375 2 992 233 56 122 chr9 83254261 83254906 -59016538 + LTR19C LTR ERV1 1 779 0 460 281 45 11 chr9 83255734 83255912 -59015532 + HAL1 LINE L1 682 865 -1642 311 192 0 14 chr9 83255968 83256041 -59015403 + HAL1 LINE L1 2242 2313 -194 24 38 0 38 chr9 83258010 83258032 -59013412 + AT_rich Low_complexity Low_complexity 1 22 -29 1519 196 35 32 chr9 83258032 83258343 -59013101 - AluJb SINE Alu 0 312 1 24 38 0 38 chr9 83258343 83258373 -59013071 + AT_rich Low_complexity Low_complexity 22 51 0 206 350 30 41 chr9 83258554 83258761 -59012683 - MIR SINE MIR -51 211 2 24 0 0 0 chr9 83259080 83259104 -59012340 + AT_rich Low_complexity Low_complexity 1 24 0 1655 130 37 47 chr9 83259622 83259922 -59011522 + AluSx SINE Alu 1 297 -15 665 213 52 29 chr9 83260117 83260404 -59011040 - MER58B DNA MER1_type 0 341 1 2332 92 10 0 chr9 83260616 83260921 -59010523 - AluSg SINE Alu -2 308 1 522 277 170 0 chr9 83261584 83261725 -59009719 + MER5A DNA MER1_type 9 173 -16 691 248 0 0 chr9 83261751 83261880 -59009564 + MER5B DNA MER1_type 2 130 -48 409 162 0 0 chr9 83261889 83261963 -59009481 - L1P5 LINE L1 -475 5681 5608 398 172 0 0 chr9 83261967 83262031 -59009413 + MER5B DNA MER1_type 115 178 0 259 291 0 10 chr9 83263834 83263937 -59007507 + (TA)n Simple_repeat Simple_repeat 2 103 0 2542 270 76 46 chr9 83267451 83269470 -59001974 + HAL1 LINE L1 1 2228 -279 2104 130 3 0 chr9 83269499 83269798 -59001646 + AluSx SINE Alu 1 300 -12 281 184 0 0 chr9 83269799 83269848 -59001596 + MER8 DNA MER2_type 191 239 0 2126 152 0 0 chr9 83270098 83270401 -59001043 - AluSx SINE Alu -9 303 1 2301 100 0 0 chr9 83270813 83271113 -59000331 + AluSx SINE Alu 1 300 -12 234 302 32 0 chr9 83271793 83271856 -58999588 - L2 LINE L2 0 3313 3249 180 253 7 160 chr9 83271906 83272056 -58999388 - MIR SINE MIR -14 248 122 2399 93 0 3 chr9 83272059 83272370 -58999074 + AluY SINE Alu 1 310 -1 422 367 103 23 chr9 83272864 83273251 -58998193 + L3b LINE CR1 1147 1564 -19 344 293 200 0 chr9 83273390 83273530 -58997914 + MER5A DNA MER1_type 20 187 -2 254 28 0 28 chr9 83273919 83273955 -58997489 + (TC)n Simple_repeat Simple_repeat 1 35 0 2266 128 0 0 chr9 83276111 83276423 -58995021 - AluSx SINE Alu 0 312 1 488 342 90 24 chr9 83278467 83278877 -58992567 + L2 LINE L2 2718 3158 -114 5283 154 39 4 chr9 83282009 83283800 -58987644 + L1PB2 LINE L1 4296 6146 -5 1517 181 54 61 chr9 83284154 83284595 -58986849 - MER31A LTR ERV1 -47 438 1 301 300 139 17 chr9 83285018 83285248 -58986196 - L2 LINE L2 -738 2576 2319 249 344 47 23 chr9 83285824 83285952 -58985492 + L2 LINE L2 3179 3309 -4 208 352 32 48 chr9 83286563 83286688 -58984756 + L2 LINE L2 3191 3313 0 274 322 17 17 chr9 83286708 83286826 -58984618 - MIR SINE MIR -68 140 23 2936 9 0 0 chr9 83287228 83287546 -58983898 + AluYb8 SINE Alu 1 318 0 1458 201 98 53 chr9 83288266 83288420 -58983024 + LTR54 LTR ERV1 1 147 -363 198 0 0 0 chr9 83288420 83288442 -58983002 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 1458 201 98 53 chr9 83288442 83288610 -58982834 + LTR54 LTR ERV1 147 306 -204 6213 25 9 0 chr9 83288610 83289343 -58982101 - L1PA3 LINE L1 -3 6152 5413 1458 201 98 53 chr9 83289343 83289507 -58981937 + LTR54 LTR ERV1 306 510 0 183 310 88 44 chr9 83290230 83290343 -58981101 - MER5B DNA MER1_type -2 176 59 2626 20 0 3 chr9 83290417 83290714 -58980730 - AluYa5 SINE Alu -15 296 1 2171 102 55 22 chr9 83290855 83291217 -58980227 + THE1C LTR MaLR 2 375 0 262 336 118 8 chr9 83292085 83292204 -58979240 - MIR SINE MIR -108 154 23 1164 231 35 0 chr9 83292494 83292754 -58978690 + MER45C DNA AcHobo 1 269 -684 264 204 19 0 chr9 83292850 83292904 -58978540 + MER45C DNA AcHobo 899 953 0 231 167 28 69 chr9 83294968 83295040 -58976404 + LTR33A LTR ERVL 435 503 -20 184 337 45 0 chr9 83295155 83295244 -58976200 - L3 LINE CR1 -196 1381 1289 676 98 0 0 chr9 83295539 83295631 -58975813 - AluS SINE Alu -221 92 1 309 272 6 89 chr9 83297110 83297268 -58974176 - L1ME4a LINE L1 -23 6098 5954 2455 71 0 0 chr9 83297570 83297865 -58973579 - AluY SINE Alu -16 295 1 481 273 83 35 chr9 83297925 83298358 -58973086 - L1M4 LINE L1 -1182 4964 4511 1848 83 0 0 chr9 83298844 83299073 -58972371 - AluSc SINE Alu -8 301 73 1707 179 38 35 chr9 83299199 83300077 -58971367 - SVA Other Other -518 868 432 548 100 12 0 chr9 83300118 83300198 -58971246 - AluSc SINE Alu -225 84 4 24 0 0 0 chr9 83300974 83300998 -58970446 + AT_rich Low_complexity Low_complexity 1 24 0 862 202 6 33 chr9 83305626 83305809 -58965635 - MER5B DNA MER1_type 0 178 1 438 20 0 0 chr9 83305957 83306008 -58965436 + (TG)n Simple_repeat Simple_repeat 2 52 0 485 259 35 0 chr9 83306112 83306228 -58965216 + L2 LINE L2 3190 3309 -4 191 171 0 24 chr9 83306565 83306606 -58964838 + L2 LINE L2 3231 3270 -2 261 244 84 92 chr9 83306739 83306870 -58964574 - MIR SINE MIR -67 195 66 383 259 102 9 chr9 83308668 83308776 -58962668 - MIR SINE MIR -108 154 37 200 277 0 0 chr9 83308781 83308828 -58962616 + MIR SINE MIR 146 192 -70 635 285 15 6 chr9 83310448 83310654 -58960790 - LTR33 LTR ERVL -1 520 311 287 244 91 39 chr9 83310758 83310988 -58960456 + L1MEc LINE L1 2023 2264 -4132 977 234 44 26 chr9 83311022 83311406 -58960038 + L1MEc LINE L1 2297 2687 -3528 2241 112 7 0 chr9 83311714 83312019 -58959425 + AluSg SINE Alu 1 307 -3 181 95 24 24 chr9 83312230 83312272 -58959172 + (TTA)n Simple_repeat Simple_repeat 3 44 0 971 226 32 9 chr9 83313437 83313654 -58957790 - MER58A DNA MER1_type -2 222 1 305 290 40 30 chr9 83313674 83313774 -58957670 - L2 LINE L2 -16 3297 3197 191 369 47 7 chr9 83313892 83314041 -58957403 - L2 LINE L2 -292 2980 2826 20940 172 36 24 chr9 83314097 83318618 -58952826 + L1P LINE L1 673 5246 -900 1484 116 31 5 chr9 83318618 83318832 -58952612 + L1PA10 LINE L1 5928 6157 -11 277 390 18 32 chr9 83318834 83319052 -58952392 - L2 LINE L2 -524 2790 2576 21 36 0 0 chr9 83319172 83319200 -58952244 + AT_rich Low_complexity Low_complexity 1 28 0 277 322 33 10 chr9 83319256 83319370 -58952074 + MIR SINE MIR 31 145 -79 2674 154 166 0 chr9 83319955 83320474 -58950970 + MER6A DNA MER2_type 1 605 0 181 217 121 96 chr9 83320992 83321075 -58950369 - L2 LINE L2 -27 3286 3202 1358 177 117 0 chr9 83321488 83321753 -58949691 + AluJb SINE Alu 12 307 -5 632 320 79 45 chr9 83322579 83322957 -58948487 - L2 LINE L2 -98 3215 2825 32521 74 8 9 chr9 83322957 83328451 -58942993 + L1PA6 LINE L1 675 6154 0 339 345 47 0 chr9 83328471 83328703 -58942741 - L1MEd LINE L1 -5303 816 574 21 36 0 0 chr9 83329888 83329916 -58941528 + AT_rich Low_complexity Low_complexity 1 28 0 249 322 9 9 chr9 83330319 83330434 -58941010 + L1ME LINE L1 5530 5644 -477 180 375 0 0 chr9 83330713 83330777 -58940667 + L3 LINE CR1 1493 1556 -21 2619 164 113 19 chr9 83331356 83331660 -58939784 + LTR48 LTR ERV1 4 278 -509 2409 77 0 0 chr9 83331660 83331958 -58939486 - AluY SINE Alu -13 298 1 2619 164 113 19 chr9 83331958 83332299 -58939145 + LTR48 LTR ERV1 278 710 -77 210 311 14 0 chr9 83334079 83334153 -58937291 - MIR SINE MIR -167 95 21 3427 255 35 29 chr9 83334750 83336042 -58935402 - L1M1 LINE L1 -3947 3220 2244 2496 87 0 0 chr9 83336042 83336353 -58935091 - AluY SINE Alu 0 311 1 3427 255 35 29 chr9 83336353 83336858 -58934586 - L1M1 LINE L1 -4923 2244 1744 256 343 208 0 chr9 83337198 83337376 -58934068 - L1M1 LINE L1 -6592 576 362 878 127 0 0 chr9 83337378 83337496 -58933948 - AluSq/x SINE Alu -195 118 1 1739 156 22 68 chr9 83337583 83337852 -58933592 - MER7A DNA MER2_type -2692 346 99 1911 167 0 7 chr9 83337852 83338158 -58933286 + AluJb SINE Alu 1 304 -8 1739 156 22 68 chr9 83338158 83338253 -58933191 - MER7A DNA MER2_type -2939 99 1 205 328 33 0 chr9 83338327 83338388 -58933056 - MER91A DNA MER1_type -12 184 122 21 0 0 0 chr9 83339441 83339462 -58931982 + AT_rich Low_complexity Low_complexity 1 21 0 273 314 17 17 chr9 83339657 83339775 -58931669 + LTR33 LTR ERVL 5 122 -399 2650 137 16 14 chr9 83339775 83340200 -58931244 + MSTB LTR MaLR 1 426 0 8962 168 14 5 chr9 83340201 83341823 -58929621 + MSTB-int LTR MaLR 2 1638 -13 2083 187 28 21 chr9 83341835 83342258 -58929186 + MSTB LTR MaLR 1 426 0 350 286 20 0 chr9 83342258 83342356 -58929088 + LTR33 LTR ERVL 118 217 -304 260 277 10 10 chr9 83342509 83342610 -58928834 + LTR33 LTR ERVL 421 521 0 2409 117 11 3 chr9 83343200 83343552 -58927892 - THE1A LTR MaLR 0 355 1 248 355 36 48 chr9 83344078 83344244 -58927200 - L2 LINE L2 -208 3064 2901 510 205 45 148 chr9 83346880 83347124 -58924320 + MER20 DNA MER1_type 1 219 0 198 384 46 39 chr9 83347125 83347409 -58924035 - L2 LINE L2 -642 2672 2387 352 319 63 24 chr9 83347478 83347628 -58923816 + MIR SINE MIR 48 210 -52 2266 223 19 4 chr9 83347628 83348091 -58923353 + MER70A LTR ERVL 3 472 0 352 319 63 24 chr9 83348091 83348147 -58923297 + MIR SINE MIR 210 262 0 29 0 0 0 chr9 83348737 83348766 -58922678 + AT_rich Low_complexity Low_complexity 1 29 0 378 0 0 0 chr9 83349448 83349490 -58921954 + (TG)n Simple_repeat Simple_repeat 1 42 0 1948 156 42 3 chr9 83349563 83349897 -58921547 - MER7A DNA MER2_type -1 345 1 232 313 0 0 chr9 83350298 83350365 -58921079 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 2257 101 3 13 chr9 83350916 83351214 -58920230 - AluSc SINE Alu -14 295 1 511 269 30 0 chr9 83351367 83351501 -58919943 - MIR SINE MIR -71 191 54 195 311 59 25 chr9 83351722 83351841 -58919603 - MIR SINE MIR -63 199 77 366 256 24 8 chr9 83351884 83352009 -58919435 + HAL1 LINE L1 802 928 -1579 1641 254 131 55 chr9 83352328 83353094 -58918350 + HAL1 LINE L1 1111 2018 -489 869 194 112 24 chr9 83353094 83353300 -58918144 + MER58A DNA MER1_type 1 224 0 1641 254 131 55 chr9 83353300 83353830 -58917614 + HAL1 LINE L1 2018 2506 -1 206 264 0 11 chr9 83354625 83354716 -58916728 + (TA)n Simple_repeat Simple_repeat 1 90 0 2284 89 17 0 chr9 83356134 83356425 -58915019 + AluSp SINE Alu 1 296 -17 216 0 0 0 chr9 83357553 83357577 -58913867 + (T)n Simple_repeat Simple_repeat 1 24 0 1190 245 18 6 chr9 83359682 83360017 -58911427 - L1ME1 LINE L1 -4 6162 5824 1274 143 0 0 chr9 83360017 83360199 -58911245 - AluSp SINE Alu -13 300 119 1028 151 0 25 chr9 83360220 83360379 -58911065 - FAM SINE Alu -13 172 18 1789 210 21 12 chr9 83360383 83360802 -58910642 - L1ME1 LINE L1 -343 5831 5409 1745 219 31 43 chr9 83360791 83361601 -58909843 - L1M4 LINE L1 -3644 2738 1936 * 2219 46 0 0 chr9 83361601 83361864 -58909580 - AluY SINE Alu -48 263 1 418 248 44 0 chr9 83361869 83361982 -58909462 - L1M4 LINE L1 -4586 1798 1681 482 68 27 0 chr9 83362097 83362170 -58909274 - L1P LINE L1 -733 5423 5349 403 247 41 18 chr9 83362349 83362519 -58908925 - L1M4 LINE L1 -3736 2410 2237 21 0 0 0 chr9 83362690 83362711 -58908733 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr9 83362989 83363009 -58908435 + (GA)n Simple_repeat Simple_repeat 1 20 0 329 310 7 28 chr9 83363782 83363924 -58907520 + MLT1H LTR MaLR 96 234 -315 2741 223 44 50 chr9 83364120 83364863 -58906581 + MER21B LTR ERV1 1 739 -124 591 258 32 48 chr9 83365106 83365292 -58906152 + MER21B LTR ERV1 495 677 -186 2381 74 0 3 chr9 83365988 83366285 -58905159 + AluY SINE Alu 1 296 -15 189 0 0 0 chr9 83368132 83368153 -58903291 + (TTG)n Simple_repeat Simple_repeat 1 21 0 459 35 0 0 chr9 83368456 83368513 -58902931 + (TG)n Simple_repeat Simple_repeat 2 58 0 234 0 0 0 chr9 83369179 83369205 -58902239 + (TG)n Simple_repeat Simple_repeat 2 27 0 882 225 50 35 chr9 83369254 83369592 -58901852 - L1MC5 LINE L1 -105 7856 7514 1140 285 87 12 chr9 83369608 83370012 -58901432 + LTR16A LTR ERVL 12 445 -5 5251 214 52 51 chr9 83370778 83372402 -58899042 + L1MB3 LINE L1 2367 3989 -2194 2085 179 15 28 chr9 83372402 83372794 -58898650 + MER57A LTR ERV1 17 403 0 5251 214 52 51 chr9 83372794 83374912 -58896532 + L1MB3 LINE L1 3989 6180 -3 1659 99 0 0 chr9 83375038 83375259 -58896185 + AluSc SINE Alu 84 304 -5 1058 120 77 45 chr9 83375444 83375504 -58895940 - Tigger2 DNA MER2_type -6 2712 2655 2230 114 0 3 chr9 83375504 83375802 -58895642 + AluSx SINE Alu 1 297 -15 1058 120 77 45 chr9 83375802 83376088 -58895356 - Tigger2 DNA MER2_type -63 2655 2267 334 161 12 86 chr9 83376062 83376143 -58895301 - Tigger2 DNA MER2_type -2642 76 2 * 456 272 61 9 chr9 83377041 83377155 -58894289 - L2 LINE L2 -1 3312 3193 2049 192 19 30 chr9 83377383 83377846 -58893598 + LTR40b LTR ERVL 3 460 -2 38 85 0 0 chr9 83378762 83378856 -58892588 + AT_rich Low_complexity Low_complexity 1 94 0 323 198 35 35 chr9 83378990 83379076 -58892368 - MLT1I LTR MaLR -10 399 314 1230 193 33 58 chr9 83379087 83379450 -58891994 - LTR52 LTR ERVL -66 355 2 287 293 35 69 chr9 83380327 83380501 -58890943 + MER5A DNA MER1_type 13 180 -9 180 172 0 0 chr9 83382108 83382137 -58889307 - MIR SINE MIR -135 73 45 309 272 25 12 chr9 83382643 83382724 -58888720 - MIR SINE MIR -179 83 2 473 227 9 27 chr9 83383817 83383927 -58887517 + MER5B DNA MER1_type 1 108 -70 195 250 94 16 chr9 83384466 83384530 -58886914 - MIR SINE MIR -118 144 76 570 288 112 13 chr9 83386282 83386515 -58884929 - MIR SINE MIR -5 257 2 283 341 11 11 chr9 83386818 83386906 -58884538 - MIR SINE MIR -91 117 30 241 323 0 21 chr9 83387536 83387629 -58883815 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 492 18 0 0 chr9 83387940 83387997 -58883447 + (TA)n Simple_repeat Simple_repeat 1 57 0 296 222 0 0 chr9 83388028 83388082 -58883362 - L2 LINE L2 -14 3299 3246 285 75 0 0 chr9 83388085 83388125 -58883319 + (TG)n Simple_repeat Simple_repeat 1 40 0 2214 94 3 7 chr9 83390972 83391260 -58880184 + AluSx SINE Alu 1 287 -25 261 335 13 39 chr9 83391458 83391613 -58879831 + L1ME3A LINE L1 6020 6170 0 10011 139 50 5 chr9 83391770 83392840 -58878604 + L1PBa LINE L1 61 1082 -5780 1948 97 93 0 chr9 83392840 83393119 -58878325 + AluSx SINE Alu 1 305 -7 10011 139 50 5 chr9 83393119 83395661 -58875783 + L1PBa LINE L1 1082 3919 -2943 1143 58 0 7 chr9 83397521 83397659 -58873785 + AluSq/x SINE Alu 1 137 -176 1007 178 148 48 chr9 83398765 83399097 -58872347 - MLT1A1 LTR MaLR 0 365 1 564 125 11 0 chr9 83399969 83400057 -58871387 - AluSg/x SINE Alu -14 298 210 1700 122 8 4 chr9 83400057 83400302 -58871142 - AluSx SINE Alu -66 246 1 227 316 23 75 chr9 83400644 83400727 -58870717 + MIR3 SINE MIR 77 152 -56 2078 136 0 0 chr9 83400727 83401021 -58870423 - AluSx SINE Alu -18 294 1 227 316 23 75 chr9 83401021 83401070 -58870374 + MIR3 SINE MIR 152 202 -6 351 265 34 45 chr9 83402364 83402514 -58868930 + MIR SINE MIR 19 164 -65 221 263 79 26 chr9 83403822 83403898 -58867546 + MIR SINE MIR 64 143 -119 1173 147 35 0 chr9 83403928 83404126 -58867318 - L1PA16 LINE L1 -15 6151 5947 1702 225 107 19 chr9 83404481 83405098 -58866346 - MER69 DNA AcHobo -4 2522 1852 354 217 99 118 chr9 83405246 83405548 -58865896 + MLT1H LTR MaLR 206 501 -48 289 217 32 23 chr9 83405548 83405660 -58865784 - MER58C DNA MER1_type 0 215 106 400 320 24 0 chr9 83405661 83405786 -58865658 - MER58C DNA MER1_type -73 142 15 556 209 20 13 chr9 83405839 83405992 -58865452 - MER69 DNA AcHobo -671 1855 1702 1082 251 111 3 chr9 83406055 83406370 -58865074 - MER69 DNA AcHobo -2177 349 1 664 99 18 0 chr9 83407975 83408086 -58863358 + (TCTA)n Simple_repeat Simple_repeat 1 113 0 2205 107 7 3 chr9 83408452 83408751 -58862693 - AluSq SINE Alu -13 300 1 193 233 155 78 chr9 83409211 83409327 -58862117 + MIR SINE MIR 62 186 -76 229 291 0 0 chr9 83409340 83409395 -58862049 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 198 71 0 0 chr9 83409842 83409870 -58861574 + (TTCCC)n Simple_repeat Simple_repeat 3 30 0 183 339 35 17 chr9 83411779 83411894 -58859550 + L3 LINE CR1 1143 1259 -318 234 243 54 14 chr9 83411896 83411970 -58859474 + L3 LINE CR1 1428 1504 -73 1626 133 110 19 chr9 83411976 83412240 -58859204 + AluSx SINE Alu 3 290 -22 413 347 51 23 chr9 83412458 83412634 -58858810 - MIR SINE MIR -62 200 20 422 292 9 9 chr9 83413089 83413202 -58858242 - MER91B DNA MER1_type -56 134 22 483 294 70 35 chr9 83413374 83413602 -58857842 - L2 LINE L2 0 3313 3078 1056 323 35 4 chr9 83413624 83414107 -58857337 + L1MEc LINE L1 511 1008 -5388 324 274 130 18 chr9 83414112 83414355 -58857089 + L1MEc LINE L1 1045 1222 -4983 1530 249 26 40 chr9 83414366 83414835 -58856609 + MLT1C LTR MaLR 6 467 0 1013 220 16 8 chr9 83414925 83415170 -58856274 + L1MC3 LINE L1 6868 7114 -671 1798 245 63 51 chr9 83415242 83415428 -58856016 + L1MEc LINE L1 1632 1814 -4401 2151 122 7 0 chr9 83415428 83415732 -58855712 - AluSq SINE Alu -7 306 1 2130 121 0 3 chr9 83415735 83416024 -58855420 - AluSx SINE Alu -24 288 1 1798 245 63 51 chr9 83416024 83416758 -58854686 + L1MEc LINE L1 1815 2524 -3691 3743 69 10 2 chr9 83416761 83417353 -58854091 - L1PA8 LINE L1 -425 5747 5153 3143 73 5 9 chr9 83417353 83417764 -58853680 + L1PA8 LINE L1 5742 6166 -6 1934 232 101 2 chr9 83417764 83418390 -58853054 + L1MEc LINE L1 2548 3235 -2980 1790 350 19 20 chr9 83418514 83419381 -58852063 - HERV16 LTR ERVL -2068 3696 2831 1499 298 46 24 chr9 83419445 83420100 -58851344 - HERV16 LTR ERVL -4327 669 1 842 270 127 44 chr9 83420106 83420513 -58850931 - LTR16A LTR ERVL -6 444 1 2106 178 49 41 chr9 83421446 83421934 -58849510 + MLT1D LTR MaLR 1 492 -13 181 228 18 53 chr9 83422144 83422201 -58849243 + MER5A DNA MER1_type 111 165 -24 1056 248 90 26 chr9 83422939 83423362 -58848082 + MER113 DNA MER1_type? 6 455 -66 523 204 150 66 chr9 83423851 83424018 -58847426 + MER5A DNA MER1_type 9 189 0 352 261 143 37 chr9 83424116 83424205 -58847239 - MER5B DNA MER1_type 0 178 100 216 0 0 0 chr9 83424205 83424229 -58847215 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 352 261 143 37 chr9 83424229 83424300 -58847144 - MER5B DNA MER1_type -78 100 1 267 128 0 21 chr9 83425208 83425255 -58846189 - MIR SINE MIR -121 141 96 777 258 82 39 chr9 83425256 83425562 -58845882 - MLT1I LTR MaLR 0 409 91 191 309 36 5 chr9 83425665 83425738 -58845706 - MIR SINE MIR -109 99 26 507 131 0 20 chr9 83428120 83428219 -58843225 - L1MA8 LINE L1 -1 6290 6194 191 292 108 69 chr9 83428533 83428663 -58842781 + MIR SINE MIR 16 150 -58 279 314 12 23 chr9 83429188 83429274 -58842170 + MIR SINE MIR 13 97 -165 752 322 44 44 chr9 83429321 83429902 -58841542 - L2 LINE L2 -125 3188 2614 398 269 124 16 chr9 83429843 83430064 -58841380 + MIR SINE MIR 16 262 0 * 289 344 23 30 chr9 83430057 83430188 -58841256 - MIR SINE MIR -108 154 25 * 259 411 8 0 chr9 83430608 83430732 -58840712 - MIR SINE MIR -68 140 16 308 284 20 20 chr9 83430987 83431089 -58840355 + GA-rich Low_complexity Low_complexity 5 106 0 606 258 108 0 chr9 83431564 83431731 -58839713 - MIR SINE MIR -17 245 61 391 221 35 103 chr9 83432833 83432978 -58838466 + MIR3 SINE MIR 26 160 -48 203 347 28 0 chr9 83433034 83433106 -58838338 + MER5A DNA MER1_type 60 133 -56 299 143 141 0 chr9 83434107 83434178 -58837266 + MLT1H LTR MaLR 469 549 0 24 0 0 0 chr9 83434835 83434859 -58836585 + AT_rich Low_complexity Low_complexity 1 24 0 14509 190 22 7 chr9 83434859 83435216 -58836228 - L1PB1 LINE L1 -5 6862 6512 881 53 59 0 chr9 83435216 83435386 -58836058 + (TA)n Simple_repeat Simple_repeat 1 180 0 14509 190 22 7 chr9 83435386 83439704 -58831740 - L1PB1 LINE L1 -355 6512 2070 1805 186 7 0 chr9 83439704 83440011 -58831433 - AluSx SINE Alu -3 309 1 14509 190 22 7 chr9 83440011 83440985 -58830459 - L1PB1 LINE L1 -4797 2070 1113 1045 133 20 15 chr9 83440976 83441179 -58830265 - L1PB1 LINE L1 -6659 204 1 * 1751 115 24 17 chr9 83441649 83441944 -58829500 + L1MB1 LINE L1 5866 6162 -6 275 365 40 40 chr9 83443005 83443131 -58828313 - L2 LINE L2 -6 3266 3141 311 337 43 11 chr9 83443224 83443355 -58828089 + MIR SINE MIR 3 146 -62 609 217 40 116 chr9 83443855 83444208 -58827236 - L1ME3 LINE L1 -9 6153 5826 559 303 70 54 chr9 83444229 83444839 -58826605 - L1M4 LINE L1 -1896 4250 3631 * 671 281 79 24 chr9 83444827 83445408 -58826036 + L1M4 LINE L1 2967 3579 -2567 638 271 39 59 chr9 83445405 83445862 -58825582 - L1MEc LINE L1 -4868 1528 1081 * 228 348 13 39 chr9 83446130 83446285 -58825159 - L1ME3A LINE L1 0 6170 6020 678 256 100 55 chr9 83446471 83446780 -58824664 - L1ME3A LINE L1 -287 5883 5561 355 142 36 0 chr9 83446781 83446854 -58824590 + L1ME3A LINE L1 5485 5562 -738 489 254 29 0 chr9 83446865 83447003 -58824441 - L1ME3A LINE L1 -612 5554 5413 197 351 91 0 chr9 83447804 83447881 -58823563 + MIR SINE MIR 60 143 -119 322 248 44 58 chr9 83448024 83448161 -58823283 + L1ME LINE L1 36 170 -5900 234 277 71 64 chr9 83448571 83448712 -58822732 - LTR16C LTR ERVL -343 148 7 203 344 163 32 chr9 83448978 83449443 -58822001 + L2 LINE L2 637 1162 -2152 1003 113 0 0 chr9 83449483 83449616 -58821828 - AluSg/x SINE Alu -19 293 161 1042 330 78 70 chr9 83449621 83450980 -58820464 + L2 LINE L2 1229 2598 -716 338 179 15 0 chr9 83451048 83451115 -58820329 + LTR52 LTR ERVL 1 68 -353 758 275 36 39 chr9 83451225 83451420 -58820024 + LTR16C LTR ERVL 213 408 -83 484 152 81 127 chr9 83451420 83451617 -58819827 - MER53 DNA DNA -1 188 1 758 275 36 39 chr9 83451617 83451701 -58819743 + LTR16C LTR ERVL 408 491 0 298 293 0 0 chr9 83455693 83455768 -58815676 + MIR3 SINE MIR 90 164 -44 220 308 0 15 chr9 83457016 83457081 -58814363 + MIR3 SINE MIR 142 205 -3 365 214 60 0 chr9 83457381 83457465 -58813979 - MER5A DNA MER1_type -59 130 42 253 319 0 0 chr9 83457729 83457801 -58813643 - tRNA-Arg-AGG tRNA tRNA -4 72 1 256 253 23 23 chr9 83458656 83458743 -58812701 + GA-rich Low_complexity Low_complexity 3 89 0 743 173 64 0 chr9 83459811 83459967 -58811477 - MER5A DNA MER1_type -23 166 1 1078 170 123 43 chr9 83459975 83460053 -58811391 - MER33 DNA MER1_type -2261 324 254 2261 64 6 77 chr9 83460053 83460379 -58811065 + AluY SINE Alu 1 303 -8 1078 170 123 43 chr9 83460379 83460600 -58810844 - MER33 DNA MER1_type -2331 254 1 521 282 88 62 chr9 83460602 83460875 -58810569 + MER115 DNA AcHobo 155 434 -259 437 115 13 0 chr9 83460904 83460982 -58810462 + (GA)n Simple_repeat Simple_repeat 2 80 0 230 288 62 25 chr9 83461744 83461824 -58809620 - MIR SINE MIR -16 246 164 837 222 258 20 chr9 83462082 83462388 -58809056 + L2 LINE L2 2443 2821 -493 683 221 24 9 chr9 83462395 83462737 -58808707 + (CA)n Simple_repeat Simple_repeat 1 347 0 2108 135 73 34 chr9 83462739 83463147 -58808297 + MSTA LTR MaLR 5 428 0 1001 297 87 31 chr9 83463153 83463611 -58807833 + L2 LINE L2 2830 3313 0 839 197 56 35 chr9 83464929 83465127 -58806317 - MER3 DNA MER1_type -7 202 1 224 197 0 98 chr9 83465146 83465207 -58806237 - MIR SINE MIR -60 148 94 315 326 54 0 chr9 83466043 83466135 -58805309 + L2 LINE L2 3159 3255 -17 275 189 0 27 chr9 83466136 83466210 -58805234 + GA-rich Low_complexity Low_complexity 3 74 0 316 234 103 74 chr9 83466766 83466941 -58804503 + MLT1K LTR MaLR 404 583 -5 240 305 146 0 chr9 83467703 83467785 -58803659 - MIR SINE MIR -166 96 3 5978 39 0 0 chr9 83468502 83469220 -58802224 + L1PA5 LINE L1 5435 6152 -2 241 257 122 0 chr9 83470210 83470284 -58801160 + MIR SINE MIR 57 139 -123 496 329 24 16 chr9 83472356 83472602 -58798842 + L1M4 LINE L1 2 249 -6293 452 296 8 23 chr9 83472899 83473031 -58798413 + L1M4 LINE L1 802 931 -5715 4716 211 32 25 chr9 83473043 83473203 -58798241 + L1M4 LINE L1 752 909 -5737 2498 57 0 3 chr9 83473203 83473499 -58797945 + AluY SINE Alu 1 295 -16 4716 211 32 25 chr9 83473499 83475165 -58796279 + L1M4 LINE L1 909 2697 -3949 254 175 0 0 chr9 83476042 83476105 -58795339 + MER69 DNA AcHobo 2377 2439 -87 5606 135 9 0 chr9 83476105 83477172 -58794272 - L1PA16 LINE L1 0 6166 5080 23 33 0 0 chr9 83478309 83478339 -58793105 + AT_rich Low_complexity Low_complexity 1 30 0 3945 74 54 2 chr9 83479155 83479706 -58791738 - LTR19B LTR ERV1 0 580 1 251 310 70 8 chr9 83480770 83480899 -58790545 + MIR SINE MIR 124 260 -2 469 213 7 59 chr9 83482259 83482342 -58789102 - ORSL DNA AcHobo -9 266 191 1796 122 31 3 chr9 83482342 83482630 -58788814 - L1MC1 LINE L1 0 6333 6038 469 213 7 59 chr9 83482630 83482682 -58788762 - ORSL DNA AcHobo -84 191 138 372 226 11 43 chr9 83482784 83482877 -58788567 - ORSL DNA AcHobo -184 91 2 1230 271 77 5 chr9 83483241 83483618 -58787826 - L1MD2 LINE L1 -353 6006 5603 863 188 0 36 chr9 83483618 83483783 -58787661 + Tigger4(Zombi) DNA MER2_type 2 160 -2571 * 2954 134 48 11 chr9 83483780 83484301 -58787143 + Tigger4(Zombi) DNA MER2_type 2086 2625 -106 4482 257 65 41 chr9 83484301 83486423 -58785021 - L1MD2 LINE L1 -1501 4645 2474 1655 235 18 0 chr9 83486427 83486810 -58784634 - MLT1B LTR MaLR 0 390 1 2149 199 30 32 chr9 83486811 83487247 -58784197 - MLT1B-int LTR MaLR -1 1370 936 232 224 17 0 chr9 83487283 83487341 -58784103 - L1 LINE L1 -3686 2460 2402 352 179 167 0 chr9 83487746 83487830 -58783614 - MER103 DNA DNA -1 165 68 337 269 153 27 chr9 83487975 83488149 -58783295 - MIR SINE MIR -9 253 63 1475 232 20 59 chr9 83489841 83490285 -58781159 - L1ME1 LINE L1 -5 6161 5735 1076 209 58 27 chr9 83490285 83490543 -58780901 - MLT1F1 LTR MaLR 0 567 302 284 282 8 77 chr9 83491042 83491159 -58780285 + L2 LINE L2 3190 3298 -15 * 287 287 115 8 chr9 83491156 83491278 -58780166 - MIR SINE MIR -56 206 72 180 152 0 0 chr9 83491978 83492011 -58779433 + (CA)n Simple_repeat Simple_repeat 1 33 0 1603 164 70 10 chr9 83492073 83492371 -58779073 + MER7A DNA MER2_type 1 314 -32 2193 179 31 12 chr9 83492392 83492810 -58778634 + MSTB LTR MaLR 1 426 0 1950 176 51 11 chr9 83493753 83494128 -58777316 + MLT1B LTR MaLR 1 390 0 1951 122 0 35 chr9 83494237 83494549 -58776895 + AluSx SINE Alu 5 305 -7 253 283 11 65 chr9 83494618 83494710 -58776734 - L2 LINE L2 0 3313 3227 481 298 27 37 chr9 83495086 83495274 -58776170 + MIR SINE MIR 6 191 -71 34 24 0 0 chr9 83495483 83495524 -58775920 + AT_rich Low_complexity Low_complexity 1 41 0 2356 57 0 13 chr9 83497975 83498275 -58773169 - AluY SINE Alu -15 296 1 189 0 0 0 chr9 83500174 83500195 -58771249 + (T)n Simple_repeat Simple_repeat 1 21 0 204 250 21 0 chr9 83500393 83500441 -58771003 - MER91 DNA MER1_type -91 49 1 1973 169 153 16 chr9 83500637 83501081 -58770363 + MLT1D LTR MaLR 1 505 0 618 234 78 0 chr9 83501231 83501359 -58770085 - MER58A DNA MER1_type 0 138 1 508 248 241 0 chr9 83501376 83501521 -58769923 + MER5A DNA MER1_type 10 189 0 310 302 234 19 chr9 83501656 83501861 -58769583 - MIR SINE MIR -10 252 4 282 318 24 12 chr9 83503582 83503667 -58767777 - MIR3 SINE MIR -10 198 113 283 214 88 57 chr9 83504050 83504164 -58767280 + MIR SINE MIR 75 188 -65 1295 153 31 27 chr9 83504319 83504580 -58766864 + L1MB5 LINE L1 5894 6155 -19 224 179 0 0 chr9 83505464 83505503 -58765941 - MIR3 SINE MIR -2 206 168 659 375 71 0 chr9 83505591 83505972 -58765472 - L3 LINE CR1 -183 1394 987 219 434 24 6 chr9 83506203 83506369 -58765075 + L2 LINE L2 2988 3156 -116 336 25 0 0 chr9 83506733 83506773 -58764671 + THE1B LTR MaLR 1 40 -324 1015 136 62 6 chr9 83506796 83506958 -58764486 + THE1B LTR MaLR 190 360 -4 24 0 0 0 chr9 83508107 83508131 -58763313 + AT_rich Low_complexity Low_complexity 1 24 0 384 59 0 0 chr9 83511688 83511739 -58759705 + (CA)n Simple_repeat Simple_repeat 2 52 0 313 313 26 31 chr9 83512969 83513164 -58758280 + L1MC4a LINE L1 5739 5932 -1876 184 171 197 66 chr9 83517255 83517331 -58754113 - L2 LINE L2 0 3313 3228 594 345 19 23 chr9 83517443 83517701 -58753743 - MIR SINE MIR -3 259 3 423 0 0 0 chr9 83518038 83518085 -58753359 + (TG)n Simple_repeat Simple_repeat 2 48 0 264 298 144 10 chr9 83521955 83522059 -58749385 - MIR SINE MIR -114 148 31 681 184 86 35 chr9 83522441 83522615 -58748829 + MER53 DNA DNA 1 183 -6 1369 253 40 74 chr9 83522727 83523245 -58748199 + MER77 LTR ERV1 125 601 -4 746 330 60 14 chr9 83523312 83523594 -58747850 + MER115 DNA AcHobo 155 449 -244 312 316 95 25 chr9 83524942 83525100 -58746344 + MIR SINE MIR 79 247 -15 2459 85 0 0 chr9 83526561 83526868 -58744576 - AluSx SINE Alu -5 307 1 23 54 0 0 chr9 83526876 83526913 -58744531 + AT_rich Low_complexity Low_complexity 1 37 0 275 305 38 9 chr9 83527215 83527320 -58744124 - MIR SINE MIR -82 180 73 583 239 98 5 chr9 83527414 83527598 -58743846 - MLT1G LTR MaLR 0 590 390 2822 163 84 23 chr9 83527611 83528180 -58743264 + MER6A DNA MER2_type 1 604 -1 437 253 89 0 chr9 83528798 83528944 -58742500 - L2 LINE L2 -11 3302 3144 1966 181 16 0 chr9 83529087 83529463 -58741981 - L1MB4 LINE L1 -6 6174 5793 429 20 0 0 chr9 83529463 83529513 -58741931 + (TG)n Simple_repeat Simple_repeat 1 50 0 467 64 16 2 chr9 83529528 83529592 -58741852 + MSTD LTR MaLR 15 86 -279 2182 199 57 35 chr9 83529608 83530354 -58741090 - L1MB4 LINE L1 -388 5792 5035 1210 167 26 27 chr9 83530354 83530590 -58740854 - MSTB LTR MaLR 0 426 177 460 237 107 0 chr9 83530590 83530721 -58740723 + L1 LINE L1 4895 5039 -1107 814 169 103 94 chr9 83530721 83530776 -58740668 + MSTB LTR MaLR 1 54 -372 1725 144 3 79 chr9 83530776 83531104 -58740340 + AluJb SINE Alu 3 307 0 814 169 103 94 chr9 83531104 83531260 -58740184 + MSTB LTR MaLR 54 215 -211 546 168 0 0 chr9 83531264 83531365 -58740079 - L1MB4 LINE L1 -1311 4835 4735 909 105 0 8 chr9 83531376 83531509 -58739935 - AluSp/q SINE Alu 0 313 182 1193 204 38 35 chr9 83531513 83531856 -58739588 - L1MB4 LINE L1 -1424 4722 4379 444 161 11 0 chr9 83532009 83532096 -58739348 + L1MA4A LINE L1 6036 6123 -180 * 466 201 0 0 chr9 83532093 83532197 -58739247 + L1MA4A LINE L1 6053 6280 0 1477 240 54 0 chr9 83532208 83532330 -58739114 - L1M4 LINE L1 -1071 5075 4961 402 21 0 0 chr9 83532330 83532377 -58739067 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1477 240 54 0 chr9 83532377 83532663 -58738781 - L1M4 LINE L1 -1185 4961 4645 381 238 24 65 chr9 83534979 83535147 -58736297 + MER103 DNA DNA 3 163 -3 311 322 81 52 chr9 83535179 83535390 -58736054 - HAL1 LINE L1 -5 2502 2286 1361 194 0 0 chr9 83535579 83535826 -58735618 - L1MD3 LINE L1 -33 7962 7716 642 121 0 0 chr9 83535932 83536031 -58735413 + L1MA4 LINE L1 5799 5897 -403 529 203 49 21 chr9 83536028 83536171 -58735273 + L1MC4a LINE L1 6304 6450 -1358 * 2674 42 0 0 chr9 83536211 83536520 -58734924 + AluY SINE Alu 1 309 -2 21 36 0 0 chr9 83536736 83536764 -58734680 + AT_rich Low_complexity Low_complexity 1 28 0 320 326 96 23 chr9 83536849 83537410 -58734034 + L1ME LINE L1 4564 5165 -981 395 327 42 20 chr9 83537544 83537850 -58733594 + L1ME LINE L1 5348 5660 -502 30 0 0 0 chr9 83538273 83538303 -58733141 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr9 83538360 83538392 -58733052 + AT_rich Low_complexity Low_complexity 1 32 0 2162 267 42 36 chr9 83539130 83539850 -58731594 + L1M2a LINE L1 399 1178 -6311 3420 256 28 24 chr9 83539875 83541061 -58730383 + L1M2a LINE L1 2008 3198 -4367 2693 238 56 10 chr9 83541094 83542079 -58729365 + L1MD3 LINE L1 4964 5403 -743 2731 126 46 42 chr9 83542181 83542192 -58729252 - L1M1 LINE L1 -511 5789 5780 298 0 23 23 chr9 83542192 83542235 -58729209 + (CA)n Simple_repeat Simple_repeat 2 44 0 2731 126 46 42 chr9 83542235 83542800 -58728644 - L1M1 LINE L1 -520 5780 5211 1967 172 24 5 chr9 83542800 83543174 -58728270 + L1MA4 LINE L1 5907 6296 -4 2220 169 93 14 chr9 83543556 83544063 -58727381 - L1MA6 LINE L1 -5 6295 5746 208 336 76 8 chr9 83544063 83544182 -58727262 - L2 LINE L2 -556 2758 2632 2018 131 0 10 chr9 83544633 83544930 -58726514 - AluSx SINE Alu -18 294 1 181 0 69 0 chr9 83545313 83545342 -58726102 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1380 167 56 4 chr9 83545522 83545792 -58725652 - AluJb SINE Alu -28 284 1 909 35 9 9 chr9 83546466 83546579 -58724865 - AluY SINE Alu -187 124 12 1345 77 0 0 chr9 83546580 83546749 -58724695 + AluY SINE Alu 143 311 0 524 226 15 23 chr9 83546891 83547024 -58724420 + MLT1J1 LTR MaLR 66 197 -249 721 248 121 42 chr9 83547036 83547353 -58724091 - MLT1E LTR MaLR 0 593 237 367 208 10 10 chr9 83547362 83547463 -58723981 + GA-rich Low_complexity Low_complexity 5 105 0 577 287 37 75 chr9 83547476 83547664 -58723780 - MLT1E LTR MaLR -361 181 1 558 299 12 18 chr9 83547693 83547857 -58723587 + MLT1J2 LTR MaLR 266 428 -22 356 308 85 100 chr9 83548270 83548611 -58722833 + L2 LINE L2 2937 3272 0 594 174 43 0 chr9 83548979 83549094 -58722350 + L1MB7 LINE L1 5918 6037 -147 209 109 22 0 chr9 83549096 83549142 -58722302 + T-rich Low_complexity Low_complexity 2 48 0 471 103 86 26 chr9 83549155 83549271 -58722173 + L1MB7 LINE L1 6043 6165 -19 183 42 0 0 chr9 83550339 83550363 -58721081 + (CAA)n Simple_repeat Simple_repeat 2 25 0 947 234 50 56 chr9 83550363 83550775 -58720669 + L1MC5 LINE L1 6545 6915 -893 577 190 6 23 chr9 83550790 83550964 -58720480 + GA-rich Low_complexity Low_complexity 2 172 0 2116 205 69 57 chr9 83551010 83551919 -58719525 + L1MC5 LINE L1 6991 7910 -51 1821 170 6 36 chr9 83552345 83552709 -58718735 + THE1A LTR MaLR 1 353 -2 371 342 33 0 chr9 83552713 83552833 -58718611 + L2 LINE L2 3189 3312 -1 216 182 0 0 chr9 83552834 83552878 -58718566 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 551 237 230 0 chr9 83552997 83553149 -58718295 - MER5A DNA MER1_type -1 188 2 328 314 93 14 chr9 83553168 83553308 -58718136 + MER5A DNA MER1_type 28 178 -11 959 194 5 34 chr9 83553326 83553532 -58717912 + MER3 DNA MER1_type 5 204 -5 221 330 17 70 chr9 83553886 83554001 -58717443 - MIR SINE MIR -64 198 90 433 144 0 59 chr9 83554223 83554410 -58717034 + (CTATA)n Simple_repeat Simple_repeat 2 177 0 290 148 0 71 chr9 83554421 83554603 -58716841 + (CTATA)n Simple_repeat Simple_repeat 2 170 0 * 335 149 6 58 chr9 83554570 83554744 -58716700 + (TATAG)n Simple_repeat Simple_repeat 3 167 0 446 269 65 50 chr9 83556358 83556559 -58714885 + MIR SINE MIR 26 229 -33 730 296 71 8 chr9 83556627 83557049 -58714395 - LTR33 LTR ERVL -18 503 12 220 328 0 0 chr9 83557192 83557253 -58714191 + GA-rich Low_complexity Low_complexity 3 63 0 244 360 158 0 chr9 83558315 83558454 -58712990 - L2 LINE L2 -247 3066 2906 12703 224 27 45 chr9 83558622 83559424 -58712020 - L1M1 LINE L1 -746 6102 5287 1617 173 16 53 chr9 83559424 83559747 -58711697 - AluJo SINE Alu -1 311 1 12703 224 27 45 chr9 83559747 83565226 -58706218 - L1M1 LINE L1 -1561 5287 3 930 175 36 15 chr9 83565233 83566125 -58705319 + L1MC2 LINE L1 5092 6168 -176 1506 172 141 66 chr9 83566125 83566521 -58704923 - MSTA LTR MaLR -2 426 1 930 175 36 15 chr9 83566521 83566692 -58704752 + L1MC2 LINE L1 6168 6334 -10 189 0 0 0 chr9 83567579 83567600 -58703844 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 567 185 23 15 chr9 83567970 83568100 -58703344 - MER94 DNA DNA -2 132 2 192 315 108 54 chr9 83568113 83568243 -58703201 + MIR3 SINE MIR 66 202 -6 3822 118 38 58 chr9 83568379 83569135 -58702309 + Tigger3(Golem) DNA MER2_type 2288 3028 -1 21 0 0 0 chr9 83569585 83569606 -58701838 + AT_rich Low_complexity Low_complexity 1 21 0 976 272 104 19 chr9 83570283 83570706 -58700738 + MLT1H LTR MaLR 8 466 -83 2000 287 54 60 chr9 83572289 83573314 -58698130 + ERVL LTR ERVL 3210 4228 -1536 855 278 48 9 chr9 83573324 83573655 -58697789 + MLT2E LTR ERVL 281 624 -4 282 236 64 70 chr9 83573809 83573966 -58697478 + L1ME4a LINE L1 5964 6119 -2 288 0 0 0 chr9 83574415 83574447 -58696997 + (TG)n Simple_repeat Simple_repeat 1 32 0 188 297 109 73 chr9 83574526 83574691 -58696753 - L2 LINE L2 -556 2758 2588 1070 256 65 21 chr9 83574951 83575338 -58696106 - MLT1I LTR MaLR 0 409 6 490 270 107 27 chr9 83577071 83577334 -58694110 + MLT1K LTR MaLR 143 426 -162 221 372 117 15 chr9 83577600 83577737 -58693707 + L2 LINE L2 3099 3249 -23 602 263 7 0 chr9 83579920 83580057 -58691387 - MER63A DNA MER1_type -16 194 57 2314 127 16 5 chr9 83580066 83580437 -58691007 - THE1C LTR MaLR 0 375 1 251 122 0 0 chr9 83580437 83580478 -58690966 - THE1C-int LTR MaLR 0 1580 1540 289 81 0 0 chr9 83580478 83580515 -58690929 - tRNA-Arg-CGC tRNA tRNA -24 52 16 9820 123 41 11 chr9 83580515 83582049 -58689395 - THE1C-int LTR MaLR 0 1580 1 2313 152 5 3 chr9 83582049 83582423 -58689021 - THE1C LTR MaLR 0 375 1 227 191 24 0 chr9 83582432 83582474 -58688970 - MER63 DNA MER1_type -1018 43 1 221 318 0 16 chr9 83582477 83582540 -58688904 - MIR SINE MIR -176 86 25 532 247 157 18 chr9 83582851 83583074 -58688370 - LTR16A1 LTR ERVL -3 454 201 2278 92 3 0 chr9 83584277 83584571 -58686873 + AluSp SINE Alu 1 295 -18 324 296 112 16 chr9 83586262 83586387 -58685057 + MIR3 SINE MIR 21 157 -51 4577 127 32 37 chr9 83586869 83587009 -58684435 - L1MA4A LINE L1 -2 7003 6864 1377 193 40 50 chr9 83587009 83587310 -58684134 - AluJo SINE Alu -14 298 1 4577 127 32 37 chr9 83587310 83588009 -58683435 - L1MA4A LINE L1 -141 6864 6168 431 229 68 5 chr9 83588039 83588231 -58683213 - L1 LINE L1 -2919 3227 3024 463 199 23 15 chr9 83588518 83588649 -58682795 - L1 LINE L1 -3099 3047 2916 * 11259 194 70 19 chr9 83588617 83591847 -58679597 - L1MA4A LINE L1 -1571 5277 3 1678 172 3 26 chr9 83592904 83593212 -58678232 + AluJo SINE Alu 1 301 -11 1846 130 6 6 chr9 83593993 83594315 -58677129 + L1MA9 LINE L1 5969 6290 -22 22 35 0 0 chr9 83595734 83595763 -58675681 + AT_rich Low_complexity Low_complexity 1 29 0 424 299 36 39 chr9 83596286 83596620 -58674824 + HAL1 LINE L1 1486 1818 -689 2019 118 77 57 chr9 83596935 83597374 -58674070 - LTR7 LTR ERV1 -2 448 1 1576 62 74 19 chr9 83597374 83597632 -58673812 - HERVH LTR ERV1 0 7713 7442 1085 73 0 0 chr9 83597632 83597783 -58673661 - HERVH LTR ERV1 -3074 4639 4489 3054 117 4 4 chr9 83597786 83598275 -58673169 - HERVH LTR ERV1 -3720 3993 3505 907 115 20 0 chr9 83598279 83598427 -58673017 - HERVH LTR ERV1 -4423 3290 3140 * 14231 105 11 10 chr9 83598421 83601218 -58670226 - HERVH LTR ERV1 -4726 2987 1 1968 119 89 66 chr9 83601220 83601658 -58669786 - LTR7 LTR ERV1 -2 448 1 942 193 30 5 chr9 83602579 83602781 -58668663 - MER3 DNA MER1_type 0 209 3 758 211 45 81 chr9 83603543 83603766 -58667678 - MIR SINE MIR -4 258 44 333 219 353 8 chr9 83604193 83604256 -58667188 + MER5B DNA MER1_type 1 41 -137 333 0 0 0 chr9 83604256 83604293 -58667151 + (TC)n Simple_repeat Simple_repeat 2 38 0 333 219 353 8 chr9 83604293 83604348 -58667096 + MER5B DNA MER1_type 41 160 -18 348 94 0 0 chr9 83605529 83605582 -58665862 + (TG)n Simple_repeat Simple_repeat 2 54 0 1467 295 98 41 chr9 83605807 83607092 -58664352 - ERVL LTR ERVL -368 5396 4013 870 325 80 39 chr9 83607162 83608153 -58663291 - ERVL LTR ERVL -4015 1749 618 309 26 0 0 chr9 83608153 83608191 -58663253 + (TTG)n Simple_repeat Simple_repeat 2 39 0 870 325 80 39 chr9 83608191 83608470 -58662974 - ERVL LTR ERVL -5146 618 352 328 188 124 117 chr9 83608792 83609057 -58662387 - LTR41 LTR ERVL 0 795 510 807 189 11 31 chr9 83609485 83609676 -58661768 - LTR41 LTR ERVL -586 187 1 448 245 100 12 chr9 83610525 83610690 -58660754 - MIR SINE MIR -45 217 42 227 204 0 0 chr9 83610708 83610757 -58660687 + T-rich Low_complexity Low_complexity 1 49 0 827 86 0 8 chr9 83610785 83610902 -58660542 - L1PA11 LINE L1 -2 6172 6057 1579 253 114 48 chr9 83612308 83613205 -58658239 - L1ME1 LINE L1 -6 6160 5216 297 151 0 0 chr9 83613494 83613547 -58657897 + (CA)n Simple_repeat Simple_repeat 2 54 0 661 253 193 82 chr9 83615017 83615050 -58656394 - L2 LINE L2 0 3313 3285 1692 197 39 17 chr9 83615050 83615406 -58656038 + MLT1A1 LTR MaLR 2 365 0 661 253 193 82 chr9 83615406 83615461 -58655983 - L2 LINE L2 -28 3285 3238 1992 133 97 24 chr9 83615461 83615800 -58655644 - THE1B LTR MaLR 0 364 1 661 253 193 82 chr9 83615800 83616250 -58655194 - L2 LINE L2 -75 3238 2736 2249 157 54 12 chr9 83617432 83617840 -58653604 - MSTB1 LTR MaLR -7 425 1 388 196 89 0 chr9 83617840 83617935 -58653509 + MER3 DNA MER1_type 82 186 -23 333 100 33 0 chr9 83617935 83617995 -58653449 + MER3 DNA MER1_type 2244 2305 0 278 353 86 14 chr9 83618000 83618139 -58653305 - L2 LINE L2 -7 3265 3117 1577 147 147 46 chr9 83618371 83618718 -58652726 - L1MC1 LINE L1 0 6333 5952 1429 187 47 0 chr9 83618718 83619039 -58652405 + MER3 DNA MER1_type 2289 2624 0 214 312 101 51 chr9 83620253 83620391 -58651053 + L2 LINE L2 2891 3035 -237 301 261 217 0 chr9 83620698 83620790 -58650654 + L2 LINE L2 3161 3272 0 2053 139 13 3 chr9 83621119 83621428 -58650016 + AluSx SINE Alu 1 312 0 3470 177 52 23 chr9 83621813 83622430 -58649014 - MER41B LTR ERV1 0 635 1 189 0 0 0 chr9 83622696 83622717 -58648727 + (TAA)n Simple_repeat Simple_repeat 2 22 0 424 337 144 34 chr9 83622923 83623249 -58648195 - L3 LINE CR1 -1 1576 1215 251 242 30 15 chr9 83624742 83624808 -58646636 + MER5A DNA MER1_type 8 74 -115 2408 78 3 0 chr9 83624809 83625105 -58646339 + AluSp SINE Alu 1 297 -16 216 0 0 0 chr9 83625999 83626023 -58645421 + (T)n Simple_repeat Simple_repeat 1 24 0 1966 162 0 0 chr9 83626705 83627008 -58644436 - L1PB4 LINE L1 -60 6096 5794 192 141 59 12 chr9 83627092 83627177 -58644267 + (TA)n Simple_repeat Simple_repeat 2 90 0 25 0 0 0 chr9 83627205 83627230 -58644214 + AT_rich Low_complexity Low_complexity 1 25 0 2898 120 24 11 chr9 83627232 83627246 -58644198 - L1PB4 LINE L1 -365 5791 5779 231 61 0 0 chr9 83627246 83627279 -58644165 + (CA)n Simple_repeat Simple_repeat 1 33 0 2898 120 24 11 chr9 83627279 83627723 -58643721 - L1PB4 LINE L1 -377 5779 5327 827 172 0 0 chr9 83629096 83629212 -58642232 - FLAM_C SINE Alu -26 117 2 193 240 0 167 chr9 83629299 83629342 -58642102 + L2 LINE L2 3158 3178 -94 1686 129 110 4 chr9 83629342 83629605 -58641839 - AluSx SINE Alu -21 291 1 193 240 0 167 chr9 83629605 83629657 -58641787 + L2 LINE L2 3178 3237 -35 2265 236 55 77 chr9 83629660 83630449 -58640995 - MER21B LTR ERV1 -92 771 1 252 265 0 0 chr9 83631041 83631139 -58640305 + (TA)n Simple_repeat Simple_repeat 2 99 0 1306 185 145 7 chr9 83631152 83631449 -58639995 - MER58B DNA MER1_type -3 338 1 2071 206 28 34 chr9 83633133 83633603 -58637841 - MLT1C LTR MaLR 0 467 1 2446 81 3 0 chr9 83633715 83634022 -58637422 + AluSp SINE Alu 5 312 -1 415 258 96 30 chr9 83634454 83634621 -58636823 - MER5B DNA MER1_type 0 178 1 631 211 160 6 chr9 83634635 83634791 -58636653 - MER5A DNA MER1_type -6 183 4 266 207 0 0 chr9 83634796 83634854 -58636590 - MER5B DNA MER1_type -6 172 115 1252 151 18 36 chr9 83634857 83635076 -58636368 + AluJo SINE Alu 89 303 -9 611 199 37 59 chr9 83635076 83635212 -58636232 - MER5B DNA MER1_type -45 133 1 2347 98 0 13 chr9 83635665 83635980 -58635464 + AluSq SINE Alu 1 311 -2 2158 141 19 43 chr9 83636623 83636999 -58634445 + MLT1B LTR MaLR 1 367 -23 293 287 128 22 chr9 83637733 83637964 -58633480 + Charlie8 DNA MER1_type 71 1426 -991 2399 150 107 65 chr9 83638230 83638724 -58632720 - MLT2B2 LTR ERVL 0 515 1 268 318 135 20 chr9 83640213 83640361 -58631083 - MIR SINE MIR -70 192 28 290 296 31 10 chr9 83640418 83640516 -58630928 - MIR SINE MIR -135 127 28 2612 61 0 3 chr9 83640642 83640954 -58630490 - AluY SINE Alu 0 311 1 300 357 38 2 chr9 83641298 83641423 -58630021 - MIR SINE MIR -40 168 34 3666 189 16 7 chr9 83641537 83642210 -58629234 + LTR58 LTR ERV1 1 679 0 1879 102 69 11 chr9 83642281 83642555 -58628889 - AluSc SINE Alu -15 294 5 430 276 0 35 chr9 83642680 83642825 -58628619 + GA-rich Low_complexity Low_complexity 2 141 0 2457 65 0 13 chr9 83643752 83644061 -58627383 + AluY SINE Alu 1 305 -6 22 56 0 0 chr9 83644346 83644382 -58627062 + AT_rich Low_complexity Low_complexity 1 36 0 2110 101 14 7 chr9 83644474 83644770 -58626674 + AluY SINE Alu 1 298 -13 243 152 0 0 chr9 83645172 83645218 -58626226 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 395 259 12 0 chr9 83646295 83646380 -58625064 - MER5A DNA MER1_type -81 108 23 349 221 131 69 chr9 83646527 83646672 -58624772 - L1ME3A LINE L1 -1 6169 6016 2335 84 3 3 chr9 83646703 83647002 -58624442 - AluY SINE Alu -12 299 1 43449 36 22 2 chr9 83647176 83653238 -58618206 - L1PA3 LINE L1 0 6155 1 316 284 120 36 chr9 83653246 83653410 -58618034 - L1ME3A LINE L1 -176 5994 5805 1186 226 9 0 chr9 83653410 83653631 -58617813 - MER58A DNA MER1_type 0 224 2 316 284 120 36 chr9 83653631 83653691 -58617753 - L1ME3A LINE L1 -365 5805 5751 2007 221 15 3 chr9 83653696 83654085 -58617359 - MLT1E2 LTR MaLR -2 624 231 303 287 87 84 chr9 83654101 83654170 -58617274 - L1ME3A LINE L1 -1127 5019 4952 2336 107 3 0 chr9 83654170 83654479 -58616965 - AluSx SINE Alu -2 310 1 303 287 87 84 chr9 83654479 83654744 -58616700 - L1ME3A LINE L1 -1194 4952 4684 307 365 166 14 chr9 83655120 83655633 -58615811 - L2 LINE L2 -686 2628 2038 448 269 23 15 chr9 83657974 83658104 -58613340 - MER94 DNA DNA -3 131 1 252 0 0 0 chr9 83658664 83658692 -58612752 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 149 0 0 chr9 83658692 83658739 -58612705 - L1MC4 LINE L1 -1347 6695 6649 242 279 88 0 chr9 83658739 83658807 -58612637 - MIR SINE MIR -141 121 48 369 319 58 47 chr9 83659970 83660246 -58611198 - HAL1 LINE L1 0 2507 2229 183 162 0 0 chr9 83661100 83661137 -58610307 + (TG)n Simple_repeat Simple_repeat 2 38 0 423 0 0 0 chr9 83661164 83661211 -58610233 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1848 108 62 0 chr9 83661214 83661473 -58609971 - AluSq SINE Alu -37 276 2 306 256 223 11 chr9 83661495 83661769 -58609675 - HAL1 LINE L1 -1215 1292 961 2559 50 0 3 chr9 83661805 83662104 -58609340 + AluY SINE Alu 8 305 -6 5218 208 54 47 chr9 83662110 83662987 -58608457 - L1MD2 LINE L1 -20 6339 5470 2331 84 0 7 chr9 83662987 83663286 -58608158 - AluY SINE Alu -14 297 1 5218 208 54 47 chr9 83663286 83664734 -58606710 - L1MD2 LINE L1 -889 5470 3999 25490 30 20 2 chr9 83664741 83670746 -58600698 - L1PA2 LINE L1 0 6155 3 537 263 5 15 chr9 83670746 83670944 -58600500 - L1MD2 LINE L1 -2138 4008 3813 28 29 0 0 chr9 83671087 83671122 -58600322 + AT_rich Low_complexity Low_complexity 1 35 0 599 185 1 0 chr9 83671122 83671257 -58600187 - AluJb SINE Alu -194 118 1 358 282 74 46 chr9 83671664 83672024 -58599420 - LTR16A1 LTR ERVL 0 457 65 870 263 40 18 chr9 83672952 83673226 -58598218 - LTR16C LTR ERVL -30 461 182 262 261 95 83 chr9 83674159 83674279 -58597165 + MIR SINE MIR 40 163 -99 2211 153 89 2 chr9 83674279 83674318 -58597126 - MSTA LTR MaLR -1 427 393 1778 158 24 17 chr9 83674318 83674609 -58596835 + AluSx SINE Alu 1 293 -19 2211 153 89 2 chr9 83674609 83674962 -58596482 - MSTA LTR MaLR -35 393 1 262 261 95 83 chr9 83674962 83675013 -58596431 + MIR SINE MIR 163 212 -50 245 171 0 0 chr9 83675586 83675627 -58595817 + MLT1I LTR MaLR 369 409 0 25 31 0 0 chr9 83676180 83676212 -58595232 + AT_rich Low_complexity Low_complexity 1 32 0 687 178 54 43 chr9 83676725 83676910 -58594534 + MER5A DNA MER1_type 2 188 -1 396 0 0 0 chr9 83676939 83676983 -58594461 + (A)n Simple_repeat Simple_repeat 1 44 0 201 320 0 27 chr9 83678083 83678158 -58593286 + L2 LINE L2 2904 2976 -338 500 298 40 0 chr9 83678670 83678821 -58592623 - MLT1H LTR MaLR -196 353 197 1831 197 67 0 chr9 83678823 83679296 -58592148 - MLT1C-int LTR MaLR -768 603 5 1041 213 111 73 chr9 83679300 83679750 -58591694 - MLT1C LTR MaLR 0 467 1 259 197 56 0 chr9 83680087 83680158 -58591286 - MLT1G1 LTR MaLR -4 563 489 738 304 56 18 chr9 83680202 83680488 -58590956 - MLT1G1 LTR MaLR -217 378 82 319 330 11 34 chr9 83680612 83680700 -58590744 + MER91A DNA MER1_type 70 155 -41 256 318 51 51 chr9 83680830 83681006 -58590438 + MIR SINE MIR 33 208 -54 234 0 0 0 chr9 83681969 83681995 -58589449 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 545 299 24 12 chr9 83681995 83682159 -58589285 - MIR SINE MIR -78 184 19 357 262 155 18 chr9 83682843 83683011 -58588433 - MIR SINE MIR -11 251 61 2091 128 0 30 chr9 83683194 83683486 -58587958 + AluSx SINE Alu 1 285 -27 228 86 0 0 chr9 83683486 83683521 -58587923 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2091 128 0 30 chr9 83683521 83683533 -58587911 + AluSx SINE Alu 285 296 -16 1573 128 44 56 chr9 83683755 83683778 -58587666 - THE1C LTR MaLR -17 411 389 2371 89 3 0 chr9 83683778 83684080 -58587364 + AluSc SINE Alu 1 303 -6 1573 128 44 56 chr9 83684080 83684419 -58587025 - THE1C LTR MaLR -39 389 2 225 319 0 0 chr9 83684497 83684569 -58586875 + MLT1J2 LTR MaLR 133 204 -246 348 327 87 25 chr9 83684644 83684965 -58586479 - LTR16C LTR ERVL 0 491 151 331 239 43 0 chr9 83685199 83685291 -58586153 + MLT1J2 LTR MaLR 325 420 -30 753 236 47 19 chr9 83685792 83686050 -58585394 + L1ME4a LINE L1 5649 5913 -208 23 33 0 0 chr9 83686222 83686252 -58585192 + AT_rich Low_complexity Low_complexity 1 30 0 199 348 90 0 chr9 83686388 83686477 -58584967 + L2 LINE L2 2868 2964 -350 261 216 20 137 chr9 83687017 83687119 -58584325 + L2 LINE L2 3221 3310 -3 471 100 0 0 chr9 83687420 83687490 -58583954 + (TA)n Simple_repeat Simple_repeat 1 70 0 1206 163 67 0 chr9 83688287 83688496 -58582948 - MER58A DNA MER1_type 0 224 2 423 0 0 0 chr9 83688729 83688776 -58582668 + (TG)n Simple_repeat Simple_repeat 2 48 0 342 184 8 96 chr9 83689571 83689696 -58581748 - Charlie4 DNA MER1_type -36 1925 1812 561 279 52 10 chr9 83690519 83690769 -58580675 + L1ME3A LINE L1 5662 5914 -256 3941 196 47 41 chr9 83690791 83692053 -58579391 + L1MB8 LINE L1 4887 6172 -6 776 229 15 24 chr9 83692067 83692272 -58579172 + L1ME3A LINE L1 5945 6147 -23 1472 217 34 56 chr9 83692312 83692814 -58578630 + MLT1D LTR MaLR 1 491 -14 354 247 228 6 chr9 83695342 83695500 -58575944 + MIR SINE MIR 7 199 -63 201 273 58 83 chr9 83695698 83695755 -58575689 + L2 LINE L2 3183 3240 -73 671 304 71 28 chr9 83695755 83696147 -58575297 + MLT1I LTR MaLR 1 409 0 201 273 58 83 chr9 83696147 83696210 -58575234 + L2 LINE L2 3240 3300 -13 1565 169 0 102 chr9 83696637 83696980 -58574464 + AluJo SINE Alu 1 308 -4 21 36 0 0 chr9 83697288 83697316 -58574128 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr9 83698415 83698437 -58573007 + (TG)n Simple_repeat Simple_repeat 2 23 0 193 320 0 0 chr9 83698447 83698497 -58572947 + L2 LINE L2 3262 3311 -2 2545 122 67 5 chr9 83698722 83699125 -58572319 + MSTA LTR MaLR 1 428 0 236 307 0 11 chr9 83701680 83701768 -58569676 + MER117 DNA MER1_type 16 102 -95 2171 139 19 19 chr9 83702376 83702750 -58568694 + THE1C LTR MaLR 2 375 0 333 226 139 107 chr9 83702838 83702986 -58568458 + LTR33A LTR ERVL 3 145 -378 1731 183 54 9 chr9 83702986 83703335 -58568109 + MLT1A1 LTR MaLR 1 365 0 333 226 139 107 chr9 83703335 83703496 -58567948 + LTR33A LTR ERVL 145 322 -201 22 0 0 0 chr9 83704968 83704990 -58566454 + AT_rich Low_complexity Low_complexity 1 22 0 370 281 75 20 chr9 83705386 83705532 -58565912 - MLT1K LTR MaLR -291 297 144 236 211 13 0 chr9 83705650 83705726 -58565718 + (ATG)n Simple_repeat Simple_repeat 1 77 0 300 183 19 19 chr9 83705878 83705982 -58565462 + (TAA)n Simple_repeat Simple_repeat 1 104 0 240 290 21 103 chr9 83706015 83706160 -58565284 - MIR SINE MIR -101 161 29 5949 106 17 3 chr9 83706294 83706375 -58565069 + L1PA15 LINE L1 4685 4763 -1402 4093 97 0 2 chr9 83706375 83706930 -58564514 + MER41A LTR ERV1 1 554 0 5949 106 17 3 chr9 83706930 83708334 -58563110 + L1PA15 LINE L1 4763 6163 -2 1100 203 30 65 chr9 83708373 83708742 -58562702 + L1MB8 LINE L1 5809 6164 -14 23 0 0 0 chr9 83708742 83708765 -58562679 + AT_rich Low_complexity Low_complexity 1 23 0 724 188 26 47 chr9 83708965 83709157 -58562287 - MER3 DNA MER1_type 0 209 22 254 295 56 8 chr9 83709323 83709448 -58561996 + MLT1I LTR MaLR 318 409 0 330 287 132 18 chr9 83709491 83709658 -58561786 + L1M4 LINE L1 4628 4813 -1333 253 296 126 54 chr9 83710845 83710898 -58560546 + HAL1b LINE L1 1191 1239 -4882 554 0 15 0 chr9 83710898 83710964 -58560480 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 253 296 126 54 chr9 83710964 83711650 -58559794 + HAL1b LINE L1 1239 6116 -5 21 0 0 0 chr9 83711715 83711736 -58559708 + AT_rich Low_complexity Low_complexity 1 21 0 453 189 8 136 chr9 83711959 83712091 -58559353 + MER34 LTR ERV1 1 110 -432 335 230 81 89 chr9 83712111 83712443 -58559001 + LTR48B LTR ERV1 220 592 -52 2332 94 3 13 chr9 83712785 83713092 -58558352 + AluSx SINE Alu 1 304 -8 999 177 166 47 chr9 83713924 83714286 -58557158 + LTR37A LTR ERV1 18 422 -4 341 163 19 3 chr9 83714325 83714395 -58557049 - MIR SINE MIR -57 151 78 537 300 45 27 chr9 83714544 83714764 -58556680 + MIR SINE MIR 29 252 -10 1624 146 122 19 chr9 83714770 83715091 -58556353 - MER93b LTR ERV1 -1 372 19 27 29 0 0 chr9 83715344 83715378 -58556066 + AT_rich Low_complexity Low_complexity 1 34 0 237 218 73 0 chr9 83715455 83715510 -58555934 + L2 LINE L2 3249 3307 -6 639 261 10 26 chr9 83716243 83716438 -58555006 + MER58C DNA MER1_type 23 214 -1 2298 83 0 13 chr9 83716483 83716783 -58554661 + AluSg SINE Alu 5 300 -10 23 105 0 0 chr9 83716819 83716905 -58554539 + AT_rich Low_complexity Low_complexity 1 86 0 314 271 139 0 chr9 83716928 83717057 -58554387 - MIR SINE MIR -31 231 85 1089 243 105 61 chr9 83717067 83717575 -58553869 - MER51C LTR ERV1 0 640 1 34 55 0 0 chr9 83717695 83717750 -58553694 + AT_rich Low_complexity Low_complexity 1 55 0 381 311 54 18 chr9 83717969 83718247 -58553197 - L1ME LINE L1 -5099 971 711 229 288 93 25 chr9 83719359 83719477 -58551967 + MIR SINE MIR 83 208 -54 634 176 0 40 chr9 83719553 83719678 -58551766 - FLAM_C SINE Alu -2 141 22 2239 228 6 6 chr9 83719705 83720175 -58551269 - MER74A LTR ERVL -88 470 1 2159 151 100 3 chr9 83720950 83721340 -58550104 - MSTA LTR MaLR 0 428 1 2407 113 34 3 chr9 83721879 83722232 -58549212 + THE1B LTR MaLR 1 364 0 745 180 87 13 chr9 83723611 83723761 -58547683 - MER45A DNA AcHobo 0 178 18 207 402 0 0 chr9 83724553 83724640 -58546804 - MIR SINE MIR -25 237 151 312 295 76 0 chr9 83724810 83724915 -58546529 - MIR SINE MIR -98 164 52 333 290 75 21 chr9 83724968 83725125 -58546319 + MIR SINE MIR 33 200 -62 21 36 0 0 chr9 83726183 83726211 -58545233 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 83727102 83727123 -58544321 + AT_rich Low_complexity Low_complexity 1 21 0 210 118 0 0 chr9 83727242 83727276 -58544168 + (CA)n Simple_repeat Simple_repeat 1 34 0 658 222 25 35 chr9 83727313 83727516 -58543928 + L1MD3 LINE L1 7795 7995 0 439 244 89 24 chr9 83727713 83727836 -58543608 + MER63 DNA MER1_type 2 758 -304 2210 174 34 0 chr9 83728756 83729141 -58542303 + MSTB LTR MaLR 1 398 -28 2061 118 34 7 chr9 83729141 83729438 -58542006 - AluSg1 SINE Alu 0 309 5 268 236 27 73 chr9 83729686 83729796 -58541648 - MER112 DNA MER1_type -48 212 108 465 279 40 20 chr9 83729969 83730236 -58541208 - L1M2 LINE L1 -731 5453 5254 439 277 118 12 chr9 83730314 83730611 -58540833 - L1M2 LINE L1 -1071 5075 4742 2255 173 26 81 chr9 83730632 83731177 -58540267 + L1MD2 LINE L1 5806 6320 -39 1298 260 43 8 chr9 83731189 83731705 -58539739 - L1M4 LINE L1 -1598 4548 4015 429 238 0 0 chr9 83731794 83731874 -58539570 + Tigger3(Golem) DNA MER2_type 1 80 -2949 460 234 21 0 chr9 83731987 83732081 -58539363 + Tigger3(Golem) DNA MER2_type 2934 3029 0 345 303 59 33 chr9 83732128 83732608 -58538836 - L1MCc LINE L1 -4958 1465 1183 1303 184 31 0 chr9 83732984 83733240 -58538204 + L1MB5 LINE L1 5303 5566 -608 420 20 0 0 chr9 83733278 83733327 -58538117 + (TG)n Simple_repeat Simple_repeat 2 50 0 2386 170 37 0 chr9 83733328 83733786 -58537658 + L1MB5 LINE L1 5700 6174 0 450 266 18 0 chr9 83734074 83734183 -58537261 + L2 LINE L2 3202 3312 -1 180 383 17 0 chr9 83735140 83735200 -58536244 + L2 LINE L2 143 203 -3111 44 35 0 0 chr9 83736076 83736134 -58535310 + AT_rich Low_complexity Low_complexity 1 58 0 459 244 78 0 chr9 83736842 83736957 -58534487 + MER46C DNA MER2_type 167 290 -48 29 47 0 0 chr9 83737201 83737244 -58534200 + AT_rich Low_complexity Low_complexity 1 43 0 250 257 70 70 chr9 83737949 83738163 -58533281 + L1ME4a LINE L1 5564 5777 -344 548 304 31 55 chr9 83738189 83738446 -58532998 + MIR SINE MIR 11 261 -1 356 306 43 61 chr9 83738450 83738596 -58532848 + L1ME4a LINE L1 5791 5931 -190 1135 115 28 22 chr9 83738596 83738778 -58532666 + L1PA10 LINE L1 5981 6163 -5 356 306 43 61 chr9 83738778 83738909 -58532535 + L1ME4a LINE L1 5931 6063 -58 1508 209 7 10 chr9 83739026 83739327 -58532117 + AluJo SINE Alu 1 300 -12 256 349 96 35 chr9 83739350 83739548 -58531896 - L2 LINE L2 -211 3061 2852 29 0 0 0 chr9 83739750 83739779 -58531665 + AT_rich Low_complexity Low_complexity 1 29 0 1400 123 25 56 chr9 83739781 83740065 -58531379 - L1MA5A LINE L1 0 6297 6023 1662 76 9 0 chr9 83740203 83740426 -58531018 - L1PA12 LINE L1 -2 6166 5942 221 308 26 0 chr9 83740930 83741008 -58530436 - MIR SINE MIR -56 206 127 183 80 0 0 chr9 83742103 83742128 -58529316 + (CATG)n Simple_repeat Simple_repeat 3 27 0 306 50 0 0 chr9 83742543 83742583 -58528861 + (TG)n Simple_repeat Simple_repeat 2 41 0 311 311 8 0 chr9 83743296 83743418 -58528026 + (TA)n Simple_repeat Simple_repeat 2 124 0 2560 68 0 0 chr9 83743923 83744234 -58527210 + AluY SINE Alu 1 311 0 33 43 0 0 chr9 83744753 83744800 -58526644 + AT_rich Low_complexity Low_complexity 1 47 0 26 50 0 0 chr9 83744868 83744908 -58526536 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr9 83744924 83744955 -58526489 + AT_rich Low_complexity Low_complexity 1 31 0 236 175 0 0 chr9 83745201 83745241 -58526203 + MLT1H LTR MaLR 3 42 -507 744 163 8 0 chr9 83745424 83745719 -58525725 + FLAM_C SINE Alu 2 297 0 188 0 0 69 chr9 83745952 83745981 -58525463 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3967 97 20 87 chr9 83746739 83747451 -58523993 + MER4A LTR ERV1 1 664 0 350 348 25 6 chr9 83747455 83747616 -58523828 + L1ME2 LINE L1 92 255 -6141 753 261 95 88 chr9 83748421 83748499 -58522945 + L1ME2 LINE L1 1453 1529 -4867 13303 124 54 48 chr9 83748499 83750901 -58520543 - Tigger1 DNA MER2_type -1 2417 1 753 261 95 88 chr9 83750901 83751694 -58519750 + L1ME2 LINE L1 1529 2330 -4066 5215 271 57 8 chr9 83751704 83753803 -58517641 + L1ME2 LINE L1 2197 4398 -1817 319 225 27 18 chr9 83753796 83753907 -58517537 + L1ME2 LINE L1 5200 5311 -904 * 272 195 85 0 chr9 83753913 83753995 -58517449 + L1ME2 LINE L1 5368 5456 -777 888 115 0 0 chr9 83754173 83754303 -58517141 - L1PA7 LINE L1 -6 6148 6019 1817 277 78 14 chr9 83754317 83755052 -58516392 + L1ME2 LINE L1 5456 6401 -2 247 297 54 0 chr9 83755053 83755127 -58516317 - L2 LINE L2 -614 2700 2623 713 186 0 8 chr9 83755530 83755659 -58515785 - FRAM SINE Alu -31 145 18 320 196 91 53 chr9 83755663 83755758 -58515686 - AluJ/FLAM SINE Alu -203 99 1 256 272 19 10 chr9 83756496 83756599 -58514845 + GA-rich Low_complexity Low_complexity 1 104 0 489 285 70 35 chr9 83756632 83756832 -58514612 - MIR SINE MIR -10 252 46 607 130 0 0 chr9 83757026 83757126 -58514318 + L1MA6 LINE L1 6201 6300 0 660 206 0 43 chr9 83757194 83757335 -58514109 + MER5A DNA MER1_type 5 139 -50 1391 242 42 28 chr9 83757355 83757781 -58513663 - MLT1D LTR MaLR -46 459 28 234 219 31 0 chr9 83757781 83757845 -58513599 + MER5A DNA MER1_type 124 189 0 1642 118 4 8 chr9 83759092 83759355 -58512089 + HERVH LTR ERV1 3732 3993 -3720 4230 147 8 1 chr9 83759357 83760015 -58511429 + HERVH LTR ERV1 4488 5149 -2564 1373 139 19 0 chr9 83760016 83760232 -58511212 + HERVH LTR ERV1 5600 5819 -1894 * 2500 77 50 13 chr9 83760230 83760608 -58510836 + HERVH LTR ERV1 7322 7713 0 3433 58 5 7 chr9 83760608 83761057 -58510387 + LTR7 LTR ERV1 1 448 -2 3307 73 0 7 chr9 83761602 83762053 -58509391 + LTR7 LTR ERV1 1 448 -2 19168 90 24 16 chr9 83762055 83764899 -58506545 + HERVH LTR ERV1 1 2867 -4846 6694 51 7 8 chr9 83765001 83765866 -58505578 + L1PA5 LINE L1 5285 6148 -6 24 0 0 0 chr9 83765866 83765890 -58505554 + AT_rich Low_complexity Low_complexity 1 24 0 221 275 28 120 chr9 83765929 83766071 -58505373 - MIR3 SINE MIR -78 130 2 245 326 34 0 chr9 83766109 83766198 -58505246 + HAL1 LINE L1 3 94 -2413 28 91 0 0 chr9 83766413 83766490 -58504954 + AT_rich Low_complexity Low_complexity 1 77 0 2339 81 0 0 chr9 83766619 83766914 -58504530 + AluY SINE Alu 1 295 -16 534 204 27 89 chr9 83767016 83767173 -58504271 - MIR SINE MIR -71 137 12 2161 225 78 21 chr9 83767331 83767892 -58503552 - L1ME1 LINE L1 -25 6141 5549 256 246 29 0 chr9 83768004 83768073 -58503371 + MIR SINE MIR 126 196 -66 457 111 0 0 chr9 83769696 83769759 -58501685 - L1MA1 LINE L1 -92 6210 6148 2025 135 0 3 chr9 83769769 83770072 -58501372 - THE1B LTR MaLR 0 364 63 306 326 72 7 chr9 83771223 83771361 -58500083 + L1M2c LINE L1 401 927 -6639 3108 224 33 29 chr9 83771590 83772719 -58498725 + L1M2c LINE L1 3299 4435 -3130 328 250 11 11 chr9 83772828 83772920 -58498524 - Tigger4(Zombi) DNA MER2_type -2639 92 1 6770 61 15 0 chr9 83773445 83774532 -58496912 + L1PA7 LINE L1 5047 6150 -4 22 0 0 0 chr9 83774709 83774731 -58496713 + AT_rich Low_complexity Low_complexity 1 22 0 264 299 140 25 chr9 83775163 83775320 -58496124 - MIR3 SINE MIR -30 178 4 2048 226 71 54 chr9 83775821 83776212 -58495232 - L1ME2 LINE L1 -1 6163 5780 2143 110 30 28 chr9 83776212 83776575 -58494869 + THE1B LTR MaLR 1 364 0 2048 226 71 54 chr9 83776575 83776962 -58494482 - L1ME2 LINE L1 -384 5780 5372 2450 87 0 0 chr9 83776963 83777274 -58494170 + AluY SINE Alu 1 311 0 32 43 0 0 chr9 83777793 83777839 -58493605 + AT_rich Low_complexity Low_complexity 1 46 0 203 208 19 0 chr9 83778108 83778161 -58493283 + (TA)n Simple_repeat Simple_repeat 1 54 0 1179 206 45 3 chr9 83778207 83778518 -58492926 - MER33 DNA MER1_type 0 324 1 215 200 0 18 chr9 83779226 83779281 -58492163 + GA-rich Low_complexity Low_complexity 3 56 0 702 307 84 56 chr9 83779352 83779782 -58491662 + MER115 DNA AcHobo 2 443 -250 652 205 161 33 chr9 83780471 83780817 -58490627 - MLT1E1 LTR MaLR -249 387 1 2738 240 135 51 chr9 83783260 83784769 -58486675 + HAL1 LINE L1 44 1679 -828 1149 90 20 50 chr9 83784774 83784799 -58486645 - HSMAR2 DNA Mariner -1 1301 1277 2279 91 0 7 chr9 83784799 83785096 -58486348 + AluSq SINE Alu 1 295 -18 1149 90 20 50 chr9 83785096 83785270 -58486174 - HSMAR2 DNA Mariner -25 1277 1108 325 198 22 11 chr9 83785347 83785438 -58486006 + GA-rich Low_complexity Low_complexity 1 92 0 279 212 30 15 chr9 83785640 83785706 -58485738 + GA-rich Low_complexity Low_complexity 3 69 0 2045 124 7 16 chr9 83785743 83786050 -58485394 + AluSx SINE Alu 1 304 -8 2057 122 0 3 chr9 83786677 83786964 -58484480 + AluSx SINE Alu 1 286 -26 337 231 33 11 chr9 83786972 83787063 -58484381 + L1MC4 LINE L1 6612 6704 -1338 459 60 15 75 chr9 83787063 83787196 -58484248 + (TA)n Simple_repeat Simple_repeat 2 126 0 1808 202 111 15 chr9 83787268 83787729 -58483715 - MLT1D LTR MaLR 0 505 1 337 292 240 10 chr9 83788490 83788682 -58482762 - MIR SINE MIR -6 256 21 2499 98 6 0 chr9 83788723 83789081 -58482363 + L1PA10 LINE L1 5807 6166 -2 241 229 10 10 chr9 83789738 83789834 -58481610 + CT-rich Low_complexity Low_complexity 2 97 0 22 70 0 0 chr9 83790182 83790225 -58481219 + AT_rich Low_complexity Low_complexity 1 43 0 468 183 0 0 chr9 83790226 83790319 -58481125 + CT-rich Low_complexity Low_complexity 2 94 0 1272 247 63 18 chr9 83790361 83790758 -58480686 + MLT1C LTR MaLR 1 415 -52 324 0 0 0 chr9 83790761 83790797 -58480647 + (TG)n Simple_repeat Simple_repeat 2 37 0 219 208 83 0 chr9 83790820 83790868 -58480576 - L2 LINE L2 -74 3198 3147 562 215 64 52 chr9 83791882 83792115 -58479329 - MER106A DNA MER1_type 0 236 1 378 286 9 18 chr9 83792186 83792298 -58479146 + MIR SINE MIR 26 136 -126 335 343 100 49 chr9 83792451 83793211 -58478233 - L2 LINE L2 -2285 1029 231 342 304 55 35 chr9 83793968 83794169 -58477275 + MIR SINE MIR 57 261 -1 421 316 161 36 chr9 83795036 83795619 -58475825 + L2 LINE L2 1356 2011 -1303 1301 172 35 41 chr9 83795846 83796160 -58475284 + L1ME3 LINE L1 5850 6161 -1 396 0 0 0 chr9 83797522 83797566 -58473878 + (TA)n Simple_repeat Simple_repeat 2 45 0 233 306 18 9 chr9 83797758 83797869 -58473575 + (TA)n Simple_repeat Simple_repeat 2 113 0 302 261 0 0 chr9 83798900 83798965 -58472479 + HAL1 LINE L1 9 73 -2434 405 270 106 16 chr9 83799235 83799423 -58472021 + MIR SINE MIR 32 234 -28 485 225 38 38 chr9 83800456 83800475 -58470969 - L1MA10 LINE L1 0 6334 6316 1766 265 85 19 chr9 83800475 83801238 -58470206 - L1ME1 LINE L1 -5 6659 5858 844 142 73 41 chr9 83801357 83801603 -58469841 + Charlie5 DNA MER1_type 2363 2616 0 477 0 0 0 chr9 83804046 83804099 -58467345 + (TG)n Simple_repeat Simple_repeat 2 54 0 2090 125 0 3 chr9 83804180 83804476 -58466968 + AluSx SINE Alu 1 295 -17 387 280 55 4 chr9 83804536 83804744 -58466700 - L2 LINE L2 0 3313 3021 279 175 0 0 chr9 83805182 83805239 -58466205 + (CATA)n Simple_repeat Simple_repeat 2 58 0 455 246 92 35 chr9 83806401 83806543 -58464901 - L2 LINE L2 -1 3312 3163 353 318 33 70 chr9 83806610 83806852 -58464592 + L2 LINE L2 2894 3126 -146 1258 211 85 15 chr9 83806998 83807397 -58464047 - Charlie4a DNA MER1_type -20 488 62 2641 212 146 85 chr9 83807714 83809292 -58462152 - L1ME1 LINE L1 -896 5748 4074 278 284 0 0 chr9 83809292 83809359 -58462085 + L2 LINE L2 2585 2651 -663 2258 68 0 48 chr9 83809423 83809733 -58461711 - AluY SINE Alu -16 295 1 230 250 0 0 chr9 83809929 83809977 -58461467 - L1ME1 LINE L1 -6488 54 7 5274 112 90 123 chr9 83810070 83811664 -58459780 - pTR5 LTR ERV1 0 2438 743 493 264 43 25 chr9 83811726 83811889 -58459555 + MER103 DNA DNA 1 166 0 302 242 0 0 chr9 83811976 83812042 -58459402 + MER3 DNA MER1_type 41 106 -103 182 284 157 10 chr9 83813233 83813335 -58458109 - L2 LINE L2 0 3313 3197 383 197 0 0 chr9 83813991 83814067 -58457377 - MER58B DNA MER1_type 0 341 266 181 220 20 40 chr9 83814202 83814252 -58457192 - L2 LINE L2 -1000 2314 2266 213 145 81 16 chr9 83815472 83815534 -58455910 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2063 148 31 14 chr9 83815680 83816038 -58455406 + THE1B LTR MaLR 1 364 0 231 213 0 0 chr9 83817341 83817388 -58454056 + GA-rich Low_complexity Low_complexity 3 49 0 237 179 0 0 chr9 83817978 83818017 -58453427 + 5S rRNA rRNA 1 39 -82 186 43 0 0 chr9 83818588 83818611 -58452833 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 382 247 140 27 chr9 83818721 83818871 -58452573 + MIR3 SINE MIR 38 204 -4 1060 134 26 5 chr9 83819201 83819395 -58452049 + L1MB7 LINE L1 5971 6168 -16 1646 177 0 7 chr9 83820430 83820701 -58450743 - AluJb SINE Alu -21 291 23 241 344 29 20 chr9 83820788 83820901 -58450543 + MIR SINE MIR 38 151 -75 284 250 12 12 chr9 83823648 83823728 -58447716 - L1ME1 LINE L1 -115 6051 5972 192 279 0 0 chr9 83824227 83824270 -58447174 - L2 LINE L2 -270 3043 3001 319 224 119 67 chr9 83824711 83824845 -58446599 - MIR3 SINE MIR -10 198 58 275 250 190 9 chr9 83825369 83825485 -58445959 + MIR SINE MIR 52 188 -74 421 306 22 8 chr9 83826626 83826760 -58444684 - L2 LINE L2 -4 3309 3174 531 96 0 0 chr9 83830009 83830082 -58441362 - L1PA16 LINE L1 -8 6158 6086 215 220 11 33 chr9 83830336 83830427 -58441017 + (TTA)n Simple_repeat Simple_repeat 1 89 0 397 333 134 57 chr9 83830913 83831472 -58439972 - L3 LINE CR1 -1 1576 975 321 68 0 0 chr9 83832908 83832952 -58438492 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 2186 114 17 0 chr9 83833206 83833504 -58437940 + AluSx SINE Alu 1 303 -9 5836 22 0 1 chr9 83833899 83834610 -58436834 - L1HS LINE L1 0 6155 5446 2480 30 8 0 chr9 83834604 83834996 -58436448 + L1P2 LINE L1 5074 5467 -688 * 225 154 0 0 chr9 83835091 83835130 -58436314 + (CAT)n Simple_repeat Simple_repeat 1 39 0 402 331 72 17 chr9 83835178 83835359 -58436085 - MIR SINE MIR -49 213 23 562 280 121 0 chr9 83835718 83835900 -58435544 - MIR SINE MIR -38 224 21 441 0 0 0 chr9 83835911 83835960 -58435484 + (CA)n Simple_repeat Simple_repeat 1 49 0 348 277 105 81 chr9 83836409 83836868 -58434576 + MLT1H LTR MaLR 79 548 -1 1068 196 112 3 chr9 83836900 83837186 -58434258 - MER33 DNA MER1_type -3 321 5 208 233 0 33 chr9 83837362 83837422 -58434022 - MIR SINE MIR -97 165 108 461 267 9 0 chr9 83837451 83837567 -58433877 + MLT1D LTR MaLR 389 505 0 280 355 117 30 chr9 83837795 83837950 -58433494 - L2 LINE L2 -289 2983 2843 2666 88 6 0 chr9 83837950 83838303 -58433141 - THE1A LTR MaLR 0 355 1 280 355 117 30 chr9 83838303 83838950 -58432494 - L2 LINE L2 -429 2843 2111 378 264 19 28 chr9 83838981 83839087 -58432357 + MIR SINE MIR 56 160 -102 746 252 93 4 chr9 83840312 83840538 -58430906 + MIR SINE MIR 15 260 -2 240 216 0 0 chr9 83841662 83841713 -58429731 + MSTA LTR MaLR 1 51 -377 851 180 115 0 chr9 83841894 83842077 -58429367 + MSTA LTR MaLR 1 204 -224 3519 131 16 6 chr9 83842077 83842767 -58428677 + L1P LINE L1 4729 5426 -735 233 331 14 43 chr9 83842777 83842852 -58428592 - MER93a LTR ERV1 -205 197 126 1956 168 10 0 chr9 83842852 83843161 -58428283 - AluSx SINE Alu 0 312 1 233 331 14 43 chr9 83843161 83843224 -58428220 - MER93a LTR ERV1 -276 126 63 797 198 73 6 chr9 83843341 83843518 -58427926 - MER5A DNA MER1_type 0 189 1 1081 241 84 34 chr9 83845124 83845850 -58425594 - MER21B LTR ERV1 -52 811 1 2568 228 99 13 chr9 83845855 83846614 -58424830 - MER97a DNA MER1_type? -70 824 1 334 233 105 0 chr9 83846896 83846982 -58424462 - MIR SINE MIR -111 151 57 439 264 16 16 chr9 83847379 83847508 -58423936 - MIR SINE MIR -34 228 100 21 36 0 0 chr9 83847612 83847640 -58423804 + AT_rich Low_complexity Low_complexity 1 28 0 2312 94 0 3 chr9 83848872 83849171 -58422273 - AluY SINE Alu -13 298 1 341 301 85 85 chr9 83849558 83849864 -58421580 - L2 LINE L2 0 3272 2967 212 344 94 31 chr9 83849870 83849998 -58421446 - MIR SINE MIR -90 172 37 2086 221 22 20 chr9 83850339 83850631 -58420813 + MER82 DNA MER2_type 136 431 -222 1835 102 12 4 chr9 83850631 83850885 -58420559 - AluSq SINE Alu -21 292 37 2086 221 22 20 chr9 83850885 83851085 -58420359 + MER82 DNA MER2_type 431 629 -24 2018 194 45 18 chr9 83851082 83851531 -58419913 - MER74A LTR ERVL -70 488 28 * 456 219 117 90 chr9 83851899 83852155 -58419289 + L1MC5 LINE L1 7664 7926 -35 2140 123 0 0 chr9 83854403 83854688 -58416756 - AluSq SINE Alu -15 298 14 2605 123 23 34 chr9 83855833 83856272 -58415172 + Tigger2a DNA MER2_type 1 434 0 194 273 15 30 chr9 83856333 83856399 -58415045 - MER5A DNA MER1_type 0 189 125 27 49 0 0 chr9 83859450 83859491 -58411953 + AT_rich Low_complexity Low_complexity 1 41 0 209 105 0 26 chr9 83859508 83859546 -58411898 + (TA)n Simple_repeat Simple_repeat 2 38 0 387 301 71 46 chr9 83860560 83861008 -58410436 - L2 LINE L2 -271 3001 2531 521 136 11 34 chr9 83862484 83862572 -58408872 + FLAM SINE Alu 40 125 -18 252 184 0 0 chr9 83862577 83862626 -58408818 + (CA)n Simple_repeat Simple_repeat 2 50 0 2285 163 39 2 chr9 83862937 83863348 -58408096 - MSTB LTR MaLR 0 426 1 180 97 0 0 chr9 83863414 83863445 -58407999 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 529 322 29 29 chr9 83863913 83864087 -58407357 + MIR3 SINE MIR 30 203 -5 388 287 44 0 chr9 83864852 83864988 -58406456 + HAL1 LINE L1 1592 1733 -774 2295 102 7 3 chr9 83865114 83865418 -58406026 + AluSc SINE Alu 2 306 -3 234 0 0 0 chr9 83867043 83867069 -58404375 + (CAA)n Simple_repeat Simple_repeat 2 27 0 325 262 0 25 chr9 83867242 83867364 -58404080 - HsTC2 DNA Tc2 -1772 126 8 473 235 152 10 chr9 83867482 83867689 -58403755 + MIR SINE MIR 20 261 -1 362 308 45 23 chr9 83867718 83867851 -58403593 - MIR3 SINE MIR -65 143 8 1121 250 12 4 chr9 83868199 83868317 -58403127 - AluJb SINE Alu -69 243 127 180 0 0 0 chr9 83868317 83868337 -58403107 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1121 250 12 4 chr9 83868337 83868458 -58402986 - AluJb SINE Alu -185 127 2 528 330 0 15 chr9 83868558 83868764 -58402680 - MER63A DNA MER1_type -7 203 1 180 0 0 0 chr9 83868823 83868843 -58402601 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 246 291 10 78 chr9 83868952 83869055 -58402389 - L2 LINE L2 0 3272 3177 2235 107 3 0 chr9 83869241 83869530 -58401914 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr9 83870699 83870722 -58400722 + AT_rich Low_complexity Low_complexity 1 23 0 4110 112 58 41 chr9 83870782 83871488 -58399956 + L1PA16 LINE L1 5438 6155 -11 1049 88 0 33 chr9 83871493 83871674 -58399770 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 199 314 66 66 chr9 83871696 83871833 -58399611 - L2 LINE L2 -222 3050 2914 329 228 8 98 chr9 83873397 83873520 -58397924 + MIR3 SINE MIR 96 207 -1 300 200 0 0 chr9 83874188 83874253 -58397191 + (TA)n Simple_repeat Simple_repeat 1 65 0 800 305 13 17 chr9 83874394 83874608 -58396836 - MER20B DNA MER1_type -306 477 263 3985 160 106 3 chr9 83874608 83875357 -58396087 - LTR1B LTR ERV1 0 826 1 800 305 13 17 chr9 83875357 83875444 -58396000 - MER20B DNA MER1_type -520 263 177 1031 166 48 10 chr9 83875444 83875690 -58395754 + MLT1C LTR MaLR 1 289 -138 877 277 52 22 chr9 83875816 83876217 -58395227 + L1ME4a LINE L1 5504 5916 -205 244 116 0 253 chr9 83876359 83876454 -58394990 - MER58 DNA MER1_type -31 2389 2319 1753 181 3 3 chr9 83877429 83877711 -58393733 + AluJb SINE Alu 5 286 -26 2230 129 3 0 chr9 83877717 83878028 -58393416 + AluSx SINE Alu 1 312 0 1672 201 32 86 chr9 83878518 83879085 -58392359 - MLT1F LTR MaLR -2 540 5 821 161 26 91 chr9 83879284 83879479 -58391965 + MLT1A2 LTR MaLR 1 180 -194 345 24 0 0 chr9 83879479 83879521 -58391923 + (TC)n Simple_repeat Simple_repeat 1 42 0 821 161 26 91 chr9 83879521 83879555 -58391889 + MLT1A2 LTR MaLR 180 215 -159 3480 229 57 59 chr9 83879564 83880435 -58391009 - L1M4c LINE L1 -2708 3936 3065 456 51 0 0 chr9 83880435 83880494 -58390950 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3480 229 57 59 chr9 83880494 83881956 -58389488 - L1M4c LINE L1 -3579 3065 1601 618 11 56 0 chr9 83881956 83882045 -58389399 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 3480 229 57 59 chr9 83882045 83882482 -58388962 - L1M4c LINE L1 -5043 1601 1089 2173 111 21 0 chr9 83882482 83882771 -58388673 - AluSx SINE Alu -17 295 1 3480 229 57 59 chr9 83882771 83882912 -58388532 - L1M4c LINE L1 -5555 1089 949 25 51 0 0 chr9 83882937 83882976 -58388468 + AT_rich Low_complexity Low_complexity 1 39 0 1273 249 6 13 chr9 83882990 83883303 -58388141 - L1M4c LINE L1 -5618 924 614 2134 109 7 0 chr9 83884552 83884846 -58386598 - AluSc SINE Alu -13 296 1 21 57 0 0 chr9 83885731 83885766 -58385678 + AT_rich Low_complexity Low_complexity 1 35 0 910 215 177 0 chr9 83885973 83886233 -58385211 - MER58B DNA MER1_type -3 338 33 277 330 68 31 chr9 83887411 83887602 -58383842 - LTR16C LTR ERVL -222 269 72 256 349 158 14 chr9 83887673 83887819 -58383625 + MIR SINE MIR 25 191 -71 1674 171 91 29 chr9 83887825 83888353 -58383091 + MLT2A2 LTR ERVL 1 554 0 689 267 26 63 chr9 83888679 83888949 -58382495 + MLT1H1 LTR MaLR 7 266 -289 4292 230 55 32 chr9 83888986 83889028 -58382416 + L1ME1 LINE L1 3841 3881 -2285 1746 166 10 10 chr9 83889028 83889330 -58382114 + AluJb SINE Alu 1 302 -10 4292 230 55 32 chr9 83889330 83891563 -58379881 + L1ME1 LINE L1 3881 6162 -4 578 226 181 20 chr9 83893608 83893807 -58377637 + MIR SINE MIR 21 251 -11 378 252 71 58 chr9 83894043 83894198 -58377246 - MLT1J2 LTR MaLR -27 423 267 181 278 9 9 chr9 83894228 83894336 -58377108 + GA-rich Low_complexity Low_complexity 1 108 0 377 282 12 43 chr9 83894338 83894501 -58376943 - MLT1J2 LTR MaLR -241 209 52 2168 103 35 0 chr9 83894813 83895095 -58376349 - AluSx SINE Alu -16 296 5 2191 91 0 56 chr9 83895473 83895793 -58375651 + AluSx SINE Alu 1 302 -10 218 352 44 0 chr9 83895960 83896051 -58375393 + MIR SINE MIR 2 96 -166 1871 125 20 38 chr9 83896059 83896402 -58375042 - MLT1B LTR MaLR -1 389 53 2949 217 61 25 chr9 83897632 83898398 -58373046 + MER21B LTR ERV1 1 794 -69 2094 156 13 8 chr9 83898497 83898870 -58372574 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr9 83898965 83899001 -58372443 + AT_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr9 83899216 83899257 -58372187 + AT_rich Low_complexity Low_complexity 1 41 0 388 303 65 32 chr9 83899729 83899914 -58371530 + MIR SINE MIR 53 243 -19 211 342 0 0 chr9 83900725 83900804 -58370640 + (CA)n Simple_repeat Simple_repeat 2 80 0 22 0 0 0 chr9 83902197 83902219 -58369225 + AT_rich Low_complexity Low_complexity 1 22 0 1685 189 42 3 chr9 83902219 83902553 -58368891 + MER7A DNA MER2_type 2 346 0 198 232 0 122 chr9 83902866 83902948 -58368496 - L2 LINE L2 -3 3310 3239 307 247 199 12 chr9 83903026 83903192 -58368252 - L2 LINE L2 -128 3185 2989 324 335 119 0 chr9 83903717 83903893 -58367551 + MIR SINE MIR 44 240 -22 856 236 51 0 chr9 83904148 83904343 -58367101 - MER58A DNA MER1_type -16 208 4 1128 165 42 31 chr9 83905599 83905860 -58365584 + L1MC3 LINE L1 7480 7743 -42 1171 194 131 72 chr9 83906779 83907391 -58364053 - MER114 LTR ERV 0 648 1 26 50 0 0 chr9 83907634 83907674 -58363770 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr9 83907742 83907770 -58363674 + AT_rich Low_complexity Low_complexity 1 28 0 2116 123 73 3 chr9 83908855 83909195 -58362249 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr9 83909320 83909355 -58362089 + AT_rich Low_complexity Low_complexity 1 35 0 2229 122 0 0 chr9 83909818 83910129 -58361315 - AluSq SINE Alu 0 313 3 637 272 155 30 chr9 83912076 83912503 -58358941 + L1ME3A LINE L1 5663 6142 -28 235 227 0 0 chr9 83912824 83912868 -58358576 - MER5A DNA MER1_type -86 103 60 245 175 35 18 chr9 83913177 83913234 -58358210 + GA-rich Low_complexity Low_complexity 4 61 0 21 0 0 0 chr9 83913475 83913496 -58357948 + AT_rich Low_complexity Low_complexity 1 21 0 1878 157 14 24 chr9 83913691 83914060 -58357384 + MLT2D LTR ERVL 1 365 -49 242 253 48 12 chr9 83914080 83914163 -58357281 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 370 97 0 0 chr9 83914164 83914219 -58357225 + MLT2D LTR ERVL 366 414 0 41096 33 23 1 chr9 83914627 83920064 -58351380 - L1P1 LINE L1 -595 5560 1 1470 175 7 16 chr9 83921581 83921889 -58349555 + L1 LINE L1 4042 4346 -1800 327 278 41 0 chr9 83922269 83922366 -58349078 - L1MC4 LINE L1 -1329 6713 6613 202 310 18 29 chr9 83922543 83922665 -58348779 + CT-rich Low_complexity Low_complexity 2 123 -47 2802 16 0 0 chr9 83922665 83922974 -58348470 - AluY SINE Alu -2 309 1 202 310 18 29 chr9 83922974 83923022 -58348422 + CT-rich Low_complexity Low_complexity 123 170 0 315 0 0 0 chr9 83923762 83923797 -58347647 + (CA)n Simple_repeat Simple_repeat 2 36 0 187 184 0 26 chr9 83923973 83924011 -58347433 - L2 LINE L2 0 3272 3236 311 252 67 104 chr9 83924925 83925060 -58346384 + L2 LINE L2 3139 3268 -4 345 228 114 16 chr9 83926298 83926421 -58345023 + MIR SINE MIR 80 214 -48 318 345 67 75 chr9 83927283 83927776 -58343668 - L1M2 LINE L1 -5711 1138 650 2288 112 0 3 chr9 83929277 83929590 -58341854 + AluSx SINE Alu 1 312 0 513 248 167 59 chr9 83929673 83930080 -58341364 - MLT1H LTR MaLR -2 547 97 931 186 4 62 chr9 83930272 83930498 -58340946 + MER20 DNA MER1_type 7 219 0 1467 185 32 29 chr9 83932358 83932666 -58338778 - AluJb SINE Alu -3 309 1 318 175 16 0 chr9 83932760 83932823 -58338621 + MLT1E1 LTR MaLR 1 64 -590 806 56 0 0 chr9 83932927 83933034 -58338410 - L1PA5 LINE L1 -202 5952 5846 2976 145 48 9 chr9 83933036 83933581 -58337863 - L1MB7 LINE L1 -77 6107 5542 360 0 0 0 chr9 83933784 83933824 -58337620 + (TG)n Simple_repeat Simple_repeat 1 40 0 207 320 0 0 chr9 83934110 83934188 -58337256 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 1032 198 12 16 chr9 83934388 83934630 -58336814 - MER96B DNA MER1_type? -175 242 2 437 191 26 40 chr9 83935506 83935658 -58335786 - MER103 DNA DNA 0 166 17 684 276 65 95 chr9 83935676 83936246 -58335198 - MLT1G LTR MaLR -13 554 2 425 304 38 32 chr9 83937117 83937275 -58334169 - MIR3 SINE MIR -20 188 30 231 191 0 0 chr9 83937287 83937329 -58334115 + L2 LINE L2 3262 3303 -10 331 264 43 93 chr9 83937483 83937623 -58333821 + L2 LINE L2 3140 3272 0 1405 140 16 20 chr9 83937744 83937994 -58333450 + L1MC1 LINE L1 6085 6333 0 2025 99 0 4 chr9 83938812 83939075 -58332369 - AluY SINE Alu -14 297 36 2192 197 42 34 chr9 83939314 83940012 -58331432 - LTR27 LTR ERV1 0 636 2 267 114 0 0 chr9 83940189 83940233 -58331211 + (A)n Simple_repeat Simple_repeat 1 44 0 1654 232 30 0 chr9 83940823 83941288 -58330156 + Charlie4a DNA MER1_type 14 492 -16 28 99 0 0 chr9 83941374 83941465 -58329979 + AT_rich Low_complexity Low_complexity 1 91 0 369 287 27 53 chr9 83941730 83941748 -58329696 - MIR SINE MIR -89 173 156 1515 224 50 11 chr9 83941748 83942106 -58329338 - MLT1A2 LTR MaLR -2 372 1 369 287 27 53 chr9 83942106 83942237 -58329207 - MIR SINE MIR -106 156 28 430 259 20 20 chr9 83942331 83942478 -58328966 + MER103 DNA DNA 9 155 -11 1023 187 5 0 chr9 83942757 83942955 -58328489 - MLT1D LTR MaLR -2 503 305 431 248 50 8 chr9 83943129 83943250 -58328194 + MER63 DNA MER1_type 659 784 -276 3624 114 33 2 chr9 83943871 83944449 -58326995 + L1MB3 LINE L1 5588 6183 0 262 254 0 0 chr9 83944486 83944549 -58326895 - LTR65 LTR ERV1 -6 663 601 279 222 33 22 chr9 83944873 83944963 -58326481 - LTR65 LTR ERV1 -506 163 73 2268 97 10 3 chr9 83944977 83945277 -58326167 - AluSx SINE Alu -10 302 1 373 215 146 14 chr9 83945279 83945423 -58326021 - L1ME2 LINE L1 -59 6105 5943 21 0 0 0 chr9 83945581 83945602 -58325842 + AT_rich Low_complexity Low_complexity 1 21 0 694 291 18 32 chr9 83946188 83946408 -58325036 - MIR SINE MIR -25 237 21 613 282 109 0 chr9 83946567 83946769 -58324675 - MER58A DNA MER1_type 0 224 1 229 284 14 21 chr9 83946883 83947024 -58324420 + (TA)n Simple_repeat Simple_repeat 2 141 0 636 240 166 72 chr9 83947611 83947973 -58323471 - MLT1I LTR MaLR 0 409 14 1057 105 31 12 chr9 83948416 83948578 -58322866 - THE1B LTR MaLR -199 165 1 2125 125 3 37 chr9 83948916 83949237 -58322207 + AluSx SINE Alu 1 310 -2 308 272 53 35 chr9 83950134 83950248 -58321196 - MIR SINE MIR -57 205 90 315 372 76 0 chr9 83951498 83951670 -58319774 + MIR SINE MIR 72 256 -6 4002 118 76 38 chr9 83952994 83953069 -58318375 - MER11A LTR ERVK -4 1262 1191 7247 99 9 22 chr9 83953069 83954154 -58317290 - MER11C LTR ERVK 0 1071 1 4002 118 76 38 chr9 83954154 83955155 -58316289 - MER11A LTR ERVK -75 1191 1 296 187 53 0 chr9 83955309 83955384 -58316060 - L1ME4a LINE L1 -83 6038 5960 2404 77 0 7 chr9 83955536 83955834 -58315610 - AluSp SINE Alu -17 296 1 225 255 0 0 chr9 83955941 83955992 -58315452 - L1ME4a LINE L1 -466 5655 5605 25 31 0 0 chr9 83956078 83956110 -58315334 + AT_rich Low_complexity Low_complexity 1 32 0 1784 149 26 9 chr9 83956575 83956923 -58314521 - L1MA9 LINE L1 0 6312 5959 620 300 76 45 chr9 83956978 83957532 -58313912 - L1MEd LINE L1 -5093 1026 456 1246 193 17 0 chr9 84057644 84057883 -58213561 - L1ME4a LINE L1 -630 5544 5302 707 118 31 0 chr9 84057887 84058014 -58213430 - L1MA4 LINE L1 0 7719 7589 1554 105 11 0 chr9 84058016 84058333 -58213111 + L1M1 LINE L1 5168 5487 -743 8108 158 33 26 chr9 84058337 84058875 -58212569 - L1MA4 LINE L1 -116 7603 7070 411 21 0 0 chr9 84058875 84058923 -58212521 + (CA)n Simple_repeat Simple_repeat 1 48 0 8108 158 33 26 chr9 84058923 84059080 -58212364 - L1MA4 LINE L1 -649 7070 6916 260 35 18 53 chr9 84059080 84059137 -58212307 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 8108 158 33 26 chr9 84059137 84060890 -58210554 - L1MA4 LINE L1 -803 6916 5135 2858 162 28 10 chr9 84061033 84061614 -58209830 - L1MA4 LINE L1 -4990 2575 1985 523 213 33 0 chr9 84061612 84061734 -58209710 - L1MA4 LINE L1 -7432 133 8 * 5244 220 51 19 chr9 84061739 84063259 -58208185 - L1M4 LINE L1 -851 5295 3728 1226 209 31 48 chr9 84063266 84063314 -58208130 - L1M4 LINE L1 -3332 2814 2767 2348 86 3 0 chr9 84063314 84063606 -58207838 - AluY SINE Alu -18 293 1 1226 209 31 48 chr9 84063606 84063912 -58207532 - L1M4 LINE L1 -3379 2767 2466 250 218 58 23 chr9 84064502 84064589 -58206855 - MER94 DNA DNA -3 131 42 198 103 0 0 chr9 84064634 84064663 -58206781 + (TG)n Simple_repeat Simple_repeat 2 30 0 302 200 77 0 chr9 84064664 84064729 -58206715 - L1MC4a LINE L1 -1882 5926 5857 21 0 0 0 chr9 84064732 84064753 -58206691 + AT_rich Low_complexity Low_complexity 1 21 0 313 295 67 9 chr9 84064797 84064902 -58206542 - L2 LINE L2 -3 3310 3200 282 198 164 53 chr9 84065233 84065440 -58206004 - MER113 DNA MER1_type? -285 236 7 422 341 169 26 chr9 84065474 84066048 -58205396 - L2 LINE L2 -574 2740 2085 339 215 15 118 chr9 84066287 84066422 -58205022 + L1M4b LINE L1 3 123 -6736 * 1615 220 61 110 chr9 84066420 84067137 -58204307 + L1M4b LINE L1 1663 2477 -4661 440 150 0 12 chr9 84067137 84067217 -58204227 + MADE1 DNA Mariner 1 79 -1 1615 220 61 110 chr9 84067217 84067452 -58203992 + L1M4b LINE L1 2477 2722 -4416 336 279 13 111 chr9 84067446 84067979 -58203465 + L1MEc LINE L1 1731 2211 -4185 * 21 57 0 0 chr9 84068390 84068425 -58203019 + AT_rich Low_complexity Low_complexity 1 35 0 197 362 71 14 chr9 84068883 84069093 -58202351 - L2 LINE L2 -177 3095 2874 550 266 33 51 chr9 84069417 84069631 -58201813 + MIR SINE MIR 26 235 -27 603 289 125 52 chr9 84070079 84070794 -58200650 + L2 LINE L2 2240 3015 -257 2127 139 0 0 chr9 84070921 84071222 -58200222 + AluSx SINE Alu 1 301 -11 29 47 0 0 chr9 84071299 84071342 -58200102 + AT_rich Low_complexity Low_complexity 1 43 0 950 110 26 0 chr9 84071550 84071705 -58199739 - L1MA8 LINE L1 -8 6283 6125 1808 136 50 4 chr9 84071705 84071827 -58199617 + AluSx SINE Alu 1 116 -196 237 33 0 0 chr9 84071827 84071857 -58199587 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1808 136 50 4 chr9 84071857 84072013 -58199431 + AluSx SINE Alu 116 292 -20 281 263 30 30 chr9 84073276 84073375 -58198069 + 7SK RNA RNA 8 106 -87 570 207 22 30 chr9 84073724 84073859 -58197585 - L2 LINE L2 -4 3309 3176 2103 106 0 48 chr9 84074087 84074398 -58197046 - AluSx SINE Alu -16 296 1 270 0 0 0 chr9 84075242 84075272 -58196172 + (T)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr9 84076953 84076975 -58194469 + AT_rich Low_complexity Low_complexity 1 22 0 541 192 17 33 chr9 84076982 84077102 -58194342 + L2 LINE L2 3175 3292 -21 340 183 61 24 chr9 84078161 84078243 -58193201 + LTR65 LTR ERV1 301 385 -284 556 232 203 114 chr9 84078311 84078716 -58192728 + L2 LINE L2 2330 2770 -544 605 164 13 99 chr9 84078842 84078994 -58192450 + L2 LINE L2 3169 3307 -6 4328 223 43 16 chr9 84079475 84080525 -58190919 + L1MC3 LINE L1 6707 7784 -1 281 250 0 0 chr9 84080891 84080943 -58190501 - L2 LINE L2 -12 3260 3209 5511 126 0 10 chr9 84081769 84082586 -58188858 - L1PA13 LINE L1 0 6163 5355 557 141 55 1 chr9 84082582 84082707 -58188737 - L1MD3 LINE L1 -1 8038 7883 * 2980 86 8 3 chr9 84085060 84085433 -58186011 - THE1C LTR MaLR 0 375 1 516 278 40 45 chr9 84086411 84086609 -58184835 - MIR SINE MIR -2 260 64 656 288 16 75 chr9 84086802 84087108 -58184336 - MLT1J LTR MaLR 0 511 224 1440 246 71 37 chr9 84087185 84087676 -58183768 - MER74B LTR ERVL -45 577 70 316 244 84 30 chr9 84087781 84087912 -58183532 - MLT1J LTR MaLR -369 142 5 372 277 21 0 chr9 84088295 84088389 -58183055 + MER58A DNA MER1_type 1 96 -11 644 117 72 18 chr9 84089032 84089143 -58182301 + FLAM_C SINE Alu 27 143 0 26 50 0 0 chr9 84089298 84089338 -58182106 + AT_rich Low_complexity Low_complexity 1 40 0 705 224 38 11 chr9 84089408 84089591 -58181853 - MER5A DNA MER1_type 0 189 2 214 293 30 40 chr9 84089890 84089989 -58181455 - L2 LINE L2 -262 3010 2913 835 167 64 0 chr9 84090437 84090593 -58180851 + MER5A DNA MER1_type 6 171 -18 216 0 0 0 chr9 84091205 84091229 -58180215 + (TA)n Simple_repeat Simple_repeat 1 24 0 719 199 75 84 chr9 84091297 84091672 -58179772 - L1ME1 LINE L1 -4 6158 5761 394 274 124 45 chr9 84093101 84093367 -58178077 - L3 LINE CR1 -184 1393 1107 368 262 25 16 chr9 84093375 84093497 -58177947 + MER94 DNA DNA 9 131 -3 351 256 179 39 chr9 84093651 84093807 -58177637 + MLT1K LTR MaLR 32 209 -379 32 0 0 0 chr9 84094301 84094333 -58177111 + AT_rich Low_complexity Low_complexity 1 32 0 213 254 14 14 chr9 84094733 84094804 -58176640 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 226 193 0 35 chr9 84094978 84095035 -58176409 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 1549 100 0 32 chr9 84095834 84096054 -58175390 - AluSp SINE Alu -18 295 83 566 218 9 0 chr9 84097722 84097832 -58173612 + MER94 DNA DNA 1 111 -23 2121 114 7 3 chr9 84098083 84098389 -58173055 - AluSx SINE Alu -3 309 3 700 283 138 35 chr9 84098850 84099140 -58172304 + MLT1J1 LTR MaLR 1 320 -126 696 96 21 1 chr9 84099147 84099254 -58172190 - MSTD LTR MaLR 0 396 260 833 221 119 13 chr9 84099296 84099531 -58171913 - MSTD LTR MaLR -93 303 44 2407 237 59 27 chr9 84099531 84100382 -58171062 + L1MB7 LINE L1 3161 4038 -2108 3523 148 83 5 chr9 84100382 84100984 -58170460 - MER50 LTR ERV1 -85 649 1 4284 196 53 18 chr9 84100984 84102079 -58169365 + L1MB7 LINE L1 4443 5619 -565 2544 44 0 0 chr9 84102079 84102373 -58169071 + AluY SINE Alu 1 294 -17 4284 196 53 18 chr9 84102373 84102942 -58168502 + L1MB7 LINE L1 5619 6167 -17 553 218 139 42 chr9 84102942 84103322 -58168122 + Charlie2 DNA MER1_type 1965 2381 -481 643 315 28 31 chr9 84103457 84103711 -58167733 + MIR SINE MIR 2 254 -8 1600 214 160 13 chr9 84104149 84104625 -58166819 + MER97b DNA MER1_type? 279 824 -229 2844 136 93 2 chr9 84104760 84105232 -58166212 - Tigger1 DNA MER2_type -192 2226 1712 13314 31 0 0 chr9 84105282 84107571 -58163873 - L1PA2 LINE L1 0 6155 3901 996 155 0 19 chr9 84107671 84107832 -58163612 + Tigger1 DNA MER2_type 2261 2418 0 328 365 25 19 chr9 84108094 84108253 -58163191 + MIR SINE MIR 49 208 -54 453 211 99 33 chr9 84108500 84108652 -58162792 - MER103 DNA DNA 0 166 5 3850 166 46 15 chr9 84108829 84109551 -58161893 + MER49 LTR ERV1 180 923 0 24 0 0 0 chr9 84110871 84110895 -58160549 + AT_rich Low_complexity Low_complexity 1 24 0 354 277 20 10 chr9 84111682 84111783 -58159661 - MIR SINE MIR -74 188 87 2707 94 19 8 chr9 84112250 84112610 -58158834 - THE1B LTR MaLR 0 364 1 9753 95 28 121 chr9 84112610 84114352 -58157092 - THE1B-int LTR MaLR 0 1580 1 2744 77 6 16 chr9 84114352 84114441 -58157003 - THE1B LTR MaLR 0 364 276 4521 144 99 18 chr9 84114441 84115205 -58156239 - LTR1B LTR ERV1 0 826 1 2744 77 6 16 chr9 84115205 84115481 -58155963 - THE1B LTR MaLR -88 276 3 270 307 0 57 chr9 84115486 84115574 -58155870 - MIR SINE MIR -152 110 28 31 0 0 24 chr9 84115584 84115612 -58155832 + AT_rich Low_complexity Low_complexity 1 29 -12 1845 145 38 3 chr9 84115612 84115902 -58155542 - AluSx SINE Alu -12 300 1 31 0 0 24 chr9 84115902 84115915 -58155529 + AT_rich Low_complexity Low_complexity 29 41 0 1097 168 6 0 chr9 84115915 84116076 -58155368 - FAM SINE Alu -13 162 1 2278 121 0 0 chr9 84116586 84116892 -58154552 - AluSx SINE Alu -1 311 6 514 243 19 0 chr9 84117728 84117835 -58153609 + MIR SINE MIR 20 128 -134 246 192 0 0 chr9 84117928 84117980 -58153464 + (CATA)n Simple_repeat Simple_repeat 3 54 0 1333 214 59 3 chr9 84118814 84119104 -58152340 + L1MC4 LINE L1 7579 7884 -158 532 218 27 9 chr9 84119128 84119238 -58152206 - MER81 DNA DNA -2 112 1 327 319 11 0 chr9 84119571 84119662 -58151782 + MIR3 SINE MIR 87 178 -30 213 125 0 50 chr9 84120524 84120564 -58150880 + L2 LINE L2 2927 2964 -308 2223 121 0 10 chr9 84122109 84122416 -58149028 + AluSg SINE Alu 1 304 -6 18683 39 21 1 chr9 84123664 84127226 -58144218 - L1P LINE L1 -2449 3697 13 10778 125 33 23 chr9 84127228 84127385 -58144059 - Tigger1 DNA MER2_type -692 1726 1572 2575 144 11 29 chr9 84127385 84127835 -58143609 - L1PB4 LINE L1 -2 6154 5713 10778 125 33 23 chr9 84127835 84129386 -58142058 - Tigger1 DNA MER2_type -846 1572 1 321 230 48 63 chr9 84130228 84130354 -58141090 + L1ME4a LINE L1 5989 6112 -9 333 0 0 0 chr9 84130450 84130487 -58140957 + (TG)n Simple_repeat Simple_repeat 2 38 0 958 179 23 22 chr9 84131431 84131639 -58139805 - L1PB4 LINE L1 -98 6063 5854 283 191 116 144 chr9 84131647 84131862 -58139582 + L2 LINE L2 3038 3246 -67 303 28 0 0 chr9 84131900 84131936 -58139508 + (GA)n Simple_repeat Simple_repeat 1 36 0 45 0 0 0 chr9 84132830 84132875 -58138569 + AT_rich Low_complexity Low_complexity 1 45 0 487 281 52 0 chr9 84133070 84133205 -58138239 - MER97b DNA MER1_type? -2 1051 910 22 0 0 0 chr9 84133341 84133363 -58138081 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr9 84133586 84133614 -58137830 + (TC)n Simple_repeat Simple_repeat 1 28 0 216 111 0 0 chr9 84133613 84133649 -58137795 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 21 0 0 0 chr9 84134370 84134391 -58137053 + AT_rich Low_complexity Low_complexity 1 21 0 438 275 92 45 chr9 84135923 84136258 -58135186 - L1ME4a LINE L1 -185 5936 5586 1592 185 19 21 chr9 84136601 84136926 -58134518 + L1M4 LINE L1 5354 5677 -497 10138 182 22 29 chr9 84136936 84141216 -58130228 + L1PA5 LINE L1 9 7590 -2 262 230 14 14 chr9 84141276 84141350 -58130094 - L1MC4a LINE L1 -4 7804 7731 14243 145 29 16 chr9 84141361 84144475 -58126969 + L1PA11 LINE L1 3025 6171 -3 312 197 56 0 chr9 84145004 84145075 -58126369 + MER116 DNA Mariner 6 80 0 3039 159 41 21 chr9 84145318 84145877 -58125567 - L1MC1 LINE L1 0 6333 5764 369 300 92 43 chr9 84145933 84146489 -58124955 - L1M4 LINE L1 -1540 4606 4024 362 235 76 34 chr9 84146644 84146763 -58124681 - MLT1L LTR MaLR 0 615 492 380 227 20 107 chr9 84146928 84147078 -58124366 - MLT1L LTR MaLR -337 278 142 407 318 176 30 chr9 84147120 84147774 -58123670 - L2 LINE L2 -187 3085 2323 191 162 54 0 chr9 84147961 84147998 -58123446 - L2 LINE L2 -16 3297 3259 * 723 196 114 55 chr9 84147965 84148184 -58123260 - MIR SINE MIR -15 247 16 260 179 54 0 chr9 84148192 84148248 -58123196 + MER103 DNA DNA 107 165 -1 275 250 23 23 chr9 84148499 84148587 -58122857 - L2 LINE L2 -1371 1943 1856 351 0 0 0 chr9 84148828 84148867 -58122577 + (TG)n Simple_repeat Simple_repeat 2 40 0 313 208 20 79 chr9 84149382 84149483 -58121961 + MER94 DNA DNA 40 134 0 356 270 130 10 chr9 84149619 84149719 -58121725 + MIR SINE MIR 21 132 -130 281 331 177 17 chr9 84149859 84150034 -58121410 - MIR3 SINE MIR -5 203 1 1719 278 111 19 chr9 84150254 84150938 -58120506 - MER20B DNA MER1_type -2 781 35 203 254 18 0 chr9 84151836 84151891 -58119553 - MER91B DNA MER1_type -129 61 6 1537 53 21 0 chr9 84152204 84152391 -58119053 + AluY SINE Alu 115 305 -6 635 330 90 22 chr9 84152483 84153119 -58118325 + L1MC4a LINE L1 5255 5933 -1875 683 174 93 135 chr9 84154535 84154846 -58116598 - MER33 DNA MER1_type 0 324 27 479 286 0 0 chr9 84154917 84155029 -58116415 - MIR SINE MIR -105 157 46 1004 248 91 26 chr9 84155267 84155650 -58115794 + L1ME4a LINE L1 5543 5950 -171 1895 104 0 8 chr9 84156432 84156691 -58114753 + AluSx SINE Alu 37 293 -19 309 289 83 0 chr9 84157409 84157530 -58113914 + MIR SINE MIR 97 227 -35 533 227 153 74 chr9 84157570 84157799 -58113645 + MIR SINE MIR 16 262 0 29 47 0 0 chr9 84158369 84158412 -58113032 + AT_rich Low_complexity Low_complexity 1 43 0 9765 42 19 136 chr9 84159030 84160599 -58110845 + SVA Other Other 1 1386 0 1716 174 3 20 chr9 84160788 84161093 -58110351 - AluJo SINE Alu -12 300 1 413 301 101 80 chr9 84161749 84162125 -58109319 - L2 LINE L2 -645 2669 2286 489 104 0 15 chr9 84162912 84162979 -58108465 + U4 snRNA snRNA 1 66 -79 2083 103 44 0 chr9 84163697 84163969 -58107475 - AluSq SINE Alu -29 284 1 258 302 72 0 chr9 84164069 84164208 -58107236 + L1ME4a LINE L1 5764 5912 -209 229 105 79 92 chr9 84164282 84164344 -58107100 + L1ME4a LINE L1 6031 6093 -28 1681 191 14 7 chr9 84164344 84164632 -58106812 - AluJb SINE Alu -22 290 1 229 105 79 92 chr9 84164632 84164645 -58106799 + L1ME4a LINE L1 6093 6105 -16 915 297 97 51 chr9 84164794 84165456 -58105988 - L2 LINE L2 -1 3312 2562 3946 95 18 20 chr9 84166397 84166954 -58104490 + L1PA10 LINE L1 5613 6168 0 427 181 75 15 chr9 84167634 84167767 -58103677 - Charlie7 DNA MER1_type -41 2571 2431 329 174 29 14 chr9 84167756 84167825 -58103619 - Charlie7 DNA MER1_type -2511 101 32 * 288 241 65 102 chr9 84169078 84169186 -58102258 + MIR3 SINE MIR 57 160 -48 309 129 15 258 chr9 84169186 84169318 -58102126 - MER58 DNA MER1_type 0 2420 2321 404 279 71 19 chr9 84169545 84169699 -58101745 - MIR3 SINE MIR -7 201 40 2509 57 0 3 chr9 84170219 84170547 -58100897 + AluY SINE Alu 1 327 0 207 0 0 0 chr9 84171032 84171055 -58100389 + (T)n Simple_repeat Simple_repeat 1 23 0 2244 104 0 0 chr9 84171300 84171598 -58099846 + AluSc SINE Alu 3 300 -9 263 283 11 11 chr9 84172290 84172382 -58099062 + (CA)n Simple_repeat Simple_repeat 1 92 0 22 0 0 0 chr9 84173410 84173432 -58098012 + AT_rich Low_complexity Low_complexity 1 22 0 2346 94 3 3 chr9 84173440 84173737 -58097707 - AluSq SINE Alu -16 297 1 225 341 12 12 chr9 84173979 84174064 -58097380 + MIR3 SINE MIR 70 154 -54 306 301 57 54 chr9 84174196 84174292 -58097152 + L2 LINE L2 2553 2647 -667 1119 200 48 5 chr9 84174292 84174502 -58096942 + MER20 DNA MER1_type 1 219 0 306 301 57 54 chr9 84174502 84174737 -58096707 + L2 LINE L2 2647 2885 -429 858 206 32 5 chr9 84177252 84177441 -58094003 + MER3 DNA MER1_type 9 202 -7 188 298 10 77 chr9 84178552 84178656 -58092788 + L2 LINE L2 2963 3059 -213 249 108 0 0 chr9 84178672 84178709 -58092735 + (TC)n Simple_repeat Simple_repeat 2 38 0 2169 111 3 10 chr9 84179266 84179564 -58091880 - AluY SINE Alu -15 296 1 257 241 75 60 chr9 84179566 84179699 -58091745 + MER112 DNA MER1_type 38 172 -88 2330 90 10 0 chr9 84179749 84180049 -58091395 - AluSx SINE Alu -9 303 1 213 121 0 0 chr9 84180273 84180306 -58091138 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 2226 165 38 3 chr9 84181142 84181487 -58089957 + MLT1A1 LTR MaLR 5 361 -4 331 272 86 56 chr9 84181712 84181874 -58089570 - MIR SINE MIR -92 170 4 400 280 60 20 chr9 84182609 84182786 -58088658 - MIR SINE MIR -52 210 34 491 266 9 9 chr9 84183495 84183608 -58087836 - L2 LINE L2 0 3272 3160 555 270 147 6 chr9 84183961 84184124 -58087320 + MER5A DNA MER1_type 4 189 0 477 347 36 6 chr9 84184473 84184640 -58086804 + MIR3 SINE MIR 22 193 -15 670 265 83 5 chr9 84186384 84186588 -58084856 + MER112 DNA MER1_type 35 254 -6 1652 154 33 0 chr9 84187523 84187796 -58083648 + L1PB3 LINE L1 5866 6147 -7 25 31 0 0 chr9 84187796 84187828 -58083616 + AT_rich Low_complexity Low_complexity 1 32 0 188 225 135 56 chr9 84187969 84188058 -58083386 - L2 LINE L2 -494 2820 2725 375 277 41 21 chr9 84189280 84189417 -58082027 - MER5A DNA MER1_type -7 182 27 234 304 95 38 chr9 84189287 84189445 -58081999 + MER5A DNA MER1_type 23 189 0 * 253 318 58 46 chr9 84189502 84189675 -58081769 + MIR SINE MIR 51 225 -37 180 152 0 0 chr9 84189692 84189725 -58081719 + CT-rich Low_complexity Low_complexity 4 36 0 515 258 72 36 chr9 84190287 84190508 -58080936 - MIR SINE MIR -1 261 33 735 166 185 0 chr9 84190536 84190693 -58080751 - MER5A DNA MER1_type -3 186 1 433 217 82 114 chr9 84190701 84190790 -58080654 + MER5B DNA MER1_type 1 82 -96 2618 148 27 68 chr9 84190790 84191350 -58080094 - L1MB7 LINE L1 0 6184 5648 433 217 82 114 chr9 84191350 84191444 -58080000 + MER5B DNA MER1_type 82 178 0 486 260 169 0 chr9 84191460 84191614 -58079830 + MER5A DNA MER1_type 9 188 -1 389 252 58 52 chr9 84192495 84192650 -58078794 - MIR SINE MIR -98 164 9 300 207 12 49 chr9 84192680 84192762 -58078682 - MIR3 SINE MIR -52 156 78 903 207 17 6 chr9 84193917 84194096 -58077348 + L1MB5 LINE L1 5986 6166 -8 3183 178 45 7 chr9 84194348 84194948 -58076496 + L1MB7 LINE L1 5561 6183 -1 391 231 22 0 chr9 84195233 84195324 -58076120 + MER81 DNA DNA 20 112 -2 216 247 32 75 chr9 84195763 84195856 -58075588 + MIR3 SINE MIR 117 205 -3 1252 273 67 36 chr9 84195960 84196378 -58075066 + LTR16C LTR ERVL 45 475 -16 405 0 0 0 chr9 84196443 84196488 -58074956 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 89 0 0 chr9 84196588 84196644 -58074800 + AT_rich Low_complexity Low_complexity 1 56 0 322 224 115 39 chr9 84196969 84197125 -58074319 - MER117 DNA MER1_type -29 168 1 472 300 100 58 chr9 84198222 84198652 -58072792 + MLT1L LTR MaLR 168 615 0 201 74 0 0 chr9 84199162 84199189 -58072255 + (A)n Simple_repeat Simple_repeat 1 27 0 229 226 10 159 chr9 84199865 84200060 -58071384 - MER5B DNA MER1_type -3 175 10 296 245 11 53 chr9 84200266 84200360 -58071084 + MER5A DNA MER1_type 37 126 -63 * 355 226 0 43 chr9 84200276 84200369 -58071075 - MER5A DNA MER1_type -33 156 68 300 292 93 88 chr9 84201819 84202035 -58069409 - HAL1 LINE L1 -1048 1459 1243 374 284 75 41 chr9 84202048 84202340 -58069104 - L1MEd LINE L1 -4971 1148 847 2214 124 162 5 chr9 84202567 84202937 -58068507 + MSTA LTR MaLR 1 428 0 2193 133 7 0 chr9 84203332 84203640 -58067804 - AluSx SINE Alu -2 310 1 325 310 76 25 chr9 84203737 84203895 -58067549 - HAL1 LINE L1 -1059 1448 1283 733 190 25 0 chr9 84204106 84204227 -58067217 + FLAM_C SINE Alu 1 124 -9 450 176 0 47 chr9 84204252 84204337 -58067107 + AluJ/FRAM SINE Alu 225 305 -7 312 27 0 0 chr9 84204374 84204411 -58067033 + (CA)n Simple_repeat Simple_repeat 1 37 0 400 268 19 63 chr9 84204995 84205284 -58066160 + L1ME3A LINE L1 5162 5428 -742 4951 144 28 68 chr9 84205303 84206598 -58064846 - L1PB4 LINE L1 -4 6854 5625 1926 147 9 25 chr9 84206598 84206609 -58064835 + THE1B LTR MaLR 50 60 -304 1766 119 0 0 chr9 84206609 84206845 -58064599 - AluSx SINE Alu -16 296 61 1926 147 9 25 chr9 84206845 84207153 -58064291 + THE1B LTR MaLR 60 364 0 8856 187 31 21 chr9 84207154 84207993 -58063451 - L1PB4 LINE L1 -1807 5041 4211 196 30 61 0 chr9 84207993 84208026 -58063418 + (TTG)n Simple_repeat Simple_repeat 1 35 0 8856 187 31 21 chr9 84208026 84209083 -58062361 - L1PB4 LINE L1 -2637 4211 3127 1112 314 81 7 chr9 84209724 84210132 -58061312 - L1PB4 LINE L1 -6399 450 13 1646 226 85 7 chr9 84210139 84210585 -58060859 + L1ME3A LINE L1 5410 5890 -280 1216 185 52 13 chr9 84210585 84210924 -58060520 + MSTC LTR MaLR 1 428 0 340 271 0 0 chr9 84210924 84211009 -58060435 + L1ME3A LINE L1 5886 5970 -200 900 273 86 27 chr9 84211021 84211428 -58060016 + L1ME3 LINE L1 5521 5951 -211 190 313 16 16 chr9 84211926 84211990 -58059454 - MIR SINE MIR -113 149 86 1829 136 56 0 chr9 84212206 84212493 -58058951 + L1PB4 LINE L1 5841 6143 -13 26 0 0 0 chr9 84212493 84212519 -58058925 + AT_rich Low_complexity Low_complexity 1 26 0 2017 129 7 0 chr9 84212521 84212800 -58058644 - AluJb SINE Alu -23 289 9 1535 207 37 16 chr9 84212937 84213260 -58058184 + MER58B DNA MER1_type 12 341 0 269 296 11 0 chr9 84213337 84213425 -58058019 + MIR SINE MIR 147 235 -27 568 253 65 39 chr9 84214831 84215060 -58056384 - L1MCc LINE L1 -6178 245 11 281 362 53 0 chr9 84215274 84215368 -58056076 + MIR SINE MIR 43 141 -67 266 169 15 0 chr9 84215959 84216024 -58055420 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 1716 100 4 0 chr9 84217265 84217494 -58053950 + AluSp SINE Alu 1 230 -83 881 232 47 0 chr9 84217785 84217975 -58053469 + MER58A DNA MER1_type 1 199 -25 5728 117 37 16 chr9 84218101 84218957 -58052487 + L1MC1 LINE L1 5460 6333 0 594 305 141 19 chr9 84218985 84219346 -58052098 + MLT1I LTR MaLR 1 405 -4 303 28 0 0 chr9 84219545 84219581 -58051863 + (TC)n Simple_repeat Simple_repeat 1 36 0 604 292 68 42 chr9 84220949 84221185 -58050259 + MIR SINE MIR 20 261 -1 1318 191 13 4 chr9 84221955 84222191 -58049253 + MIR SINE MIR 19 256 -6 269 276 171 32 chr9 84222955 84223078 -58048366 + MIR3 SINE MIR 18 157 -51 310 320 59 20 chr9 84223080 84223233 -58048211 - MER20 DNA MER1_type -4 215 57 1648 124 29 7 chr9 84223237 84223510 -58047934 + L1MA8 LINE L1 6008 6286 -5 3729 192 32 14 chr9 84223831 84224540 -58046904 + MER72 LTR ERV1 1 722 0 621 301 65 39 chr9 84225034 84225849 -58045595 + L1MD1 LINE L1 5084 5938 -226 214 173 53 80 chr9 84226774 84226849 -58044595 + L2 LINE L2 3009 3081 -191 773 209 8 0 chr9 84227242 84227371 -58044073 + FLAM_A SINE Alu 1 130 -3 487 292 149 22 chr9 84227429 84227751 -58043693 - L2 LINE L2 -4 3309 2947 797 173 8 15 chr9 84227945 84228078 -58043366 - FLAM_C SINE Alu -11 132 1 285 29 0 0 chr9 84229226 84229260 -58042184 + (TC)n Simple_repeat Simple_repeat 1 34 0 280 279 43 75 chr9 84229611 84229772 -58041672 - MIR SINE MIR -98 164 9 547 69 0 23 chr9 84229840 84229927 -58041517 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 244 253 12 78 chr9 84231025 84231217 -58040227 - Charlie8 DNA MER1_type -1000 1417 156 2713 168 74 12 chr9 84231534 84231981 -58039463 + MLT2B1 LTR ERVL 1 482 -38 402 100 0 0 chr9 84231981 84232041 -58039403 + (TG)n Simple_repeat Simple_repeat 2 61 0 2713 168 74 12 chr9 84232041 84232081 -58039363 + MLT2B1 LTR ERVL 482 518 -2 242 291 39 10 chr9 84232102 84232205 -58039239 - MIR SINE MIR -73 189 84 187 349 30 45 chr9 84232308 84232440 -58039004 - L2 LINE L2 -5 3308 3179 406 226 235 0 chr9 84232541 84232656 -58038788 - MER5A DNA MER1_type -1 188 47 2296 108 0 0 chr9 84232658 84232963 -58038481 + AluY SINE Alu 1 305 -6 186 191 43 0 chr9 84232977 84233024 -58038420 - MER5A DNA MER1_type -132 57 9 2127 211 31 25 chr9 84233066 84233157 -58038287 + L1MB7 LINE L1 5648 5737 -447 2108 124 3 3 chr9 84233157 84233463 -58037981 + AluSx SINE Alu 1 306 -6 2127 211 31 25 chr9 84233463 84233849 -58037595 + L1MB7 LINE L1 5737 6128 -56 1060 171 11 6 chr9 84233896 84234077 -58037367 - MER5A DNA MER1_type -2 187 6 250 45 45 0 chr9 84235403 84235447 -58035997 + (TC)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr9 84235500 84235529 -58035915 + AT_rich Low_complexity Low_complexity 1 29 0 1540 146 14 41 chr9 84235536 84235830 -58035614 + L1MB7 LINE L1 5883 6168 -16 2258 90 29 26 chr9 84237525 84237874 -58033570 + AluSp SINE Alu 1 350 0 239 183 141 0 chr9 84238069 84238140 -58033304 - HsTC2 DNA Tc2 -1814 84 4 276 30 0 0 chr9 84238504 84238537 -58032907 + (CA)n Simple_repeat Simple_repeat 1 33 0 528 46 46 0 chr9 84238830 84238917 -58032527 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 711 292 39 30 chr9 84239107 84239439 -58032005 - L1MC4a LINE L1 -1867 5941 5607 241 333 89 36 chr9 84239708 84239933 -58031511 - L3 LINE CR1 -238 1339 1103 25 0 0 0 chr9 84240526 84240551 -58030893 + AT_rich Low_complexity Low_complexity 1 25 0 189 333 16 0 chr9 84240635 84240698 -58030746 + L2 LINE L2 3151 3214 -58 248 224 55 145 chr9 84241005 84241106 -58030338 - L2 LINE L2 0 3313 3204 2228 112 0 7 chr9 84241106 84241411 -58030033 - AluSq SINE Alu -10 303 1 248 224 55 145 chr9 84241411 84241425 -58030019 - L2 LINE L2 -109 3204 3190 2994 126 9 0 chr9 84241425 84241854 -58029590 + L1PA16 LINE L1 5730 6162 -4 248 224 55 145 chr9 84241854 84241992 -58029452 - L2 LINE L2 -123 3190 3082 2608 36 7 3 chr9 84243457 84243761 -58027683 - AluY SINE Alu -6 305 1 2418 90 59 14 chr9 84243930 84244284 -58027160 - L1PB1 LINE L1 0 6151 5782 705 76 64 18 chr9 84244302 84244473 -58026971 + (TA)n Simple_repeat Simple_repeat 2 180 0 4485 152 6 25 chr9 84244473 84245957 -58025487 - L1PB1 LINE L1 -360 5791 4342 334 215 146 46 chr9 84246538 84246668 -58024776 + MIR SINE MIR 29 171 -91 1175 264 61 3 chr9 84246668 84246978 -58024466 - MER58B DNA MER1_type 0 341 14 1774 198 19 51 chr9 84248823 84249252 -58022192 + MLT1C LTR MaLR 53 467 0 306 0 0 0 chr9 84249365 84249399 -58022045 + (TC)n Simple_repeat Simple_repeat 1 34 0 1121 125 3 0 chr9 84249922 84250227 -58021217 + (TTCC)n Simple_repeat Simple_repeat 1 305 0 658 262 153 65 chr9 84250376 84250743 -58020701 - L1ME4a LINE L1 -104 6017 5684 2564 37 7 3 chr9 84250743 84251043 -58020401 - AluY SINE Alu -10 301 1 658 262 153 65 chr9 84251043 84251363 -58020081 - L1ME4a LINE L1 -437 5684 5255 188 143 0 0 chr9 84251429 84251464 -58019980 - L2 LINE L2 -2 3311 3277 2151 109 3 0 chr9 84251466 84251760 -58019684 + AluSc SINE Alu 1 295 -14 358 282 55 60 chr9 84252338 84252703 -58018741 - L1ME4a LINE L1 -1487 4659 4297 2274 114 0 7 chr9 84253478 84253786 -58017658 + AluSq SINE Alu 1 306 -7 1186 139 0 0 chr9 84254074 84254239 -58017205 + AluSg/x SINE Alu 135 299 -13 357 264 39 31 chr9 84254541 84254670 -58016774 + L1ME LINE L1 6 135 -5935 599 296 123 16 chr9 84254879 84255197 -58016247 - L1ME4a LINE L1 -2623 3523 3172 666 265 105 49 chr9 84255198 84255504 -58015940 + L1ME1 LINE L1 5825 6147 -19 1144 52 0 0 chr9 84255509 84255666 -58015778 - AluY SINE Alu 0 311 155 23 0 0 0 chr9 84255670 84255693 -58015751 + AT_rich Low_complexity Low_complexity 1 23 0 2016 121 3 3 chr9 84256053 84256342 -58015102 - AluSg SINE Alu -21 289 1 277 284 64 18 chr9 84256342 84256451 -58014993 + L1MC/D LINE L1 5630 5743 -2065 1953 133 0 7 chr9 84256483 84256815 -58014629 + AluSx SINE Alu 1 330 0 204 347 0 0 chr9 84257570 84257642 -58013802 + MIR SINE MIR 76 147 -115 1920 147 7 0 chr9 84257824 84258109 -58013335 + AluSx SINE Alu 5 291 -21 2118 100 0 7 chr9 84258511 84258792 -58012652 - AluSc SINE Alu -17 292 14 187 140 0 70 chr9 84259027 84259084 -58012360 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 470 313 185 0 chr9 84261159 84261370 -58010074 - MIR SINE MIR 0 262 13 722 258 37 26 chr9 84261737 84261927 -58009517 + MIR SINE MIR 63 254 -8 272 277 227 0 chr9 84262269 84262388 -58009056 + MER117 DNA MER1_type 1 146 -51 2127 54 25 22 chr9 84262793 84263070 -58008374 + L1PA13 LINE L1 5881 6158 -5 2398 93 0 10 chr9 84263070 84263382 -58008062 + AluSq SINE Alu 1 309 -4 491 309 34 24 chr9 84263453 84263660 -58007784 + L1MC4a LINE L1 5687 5895 -1913 1634 186 68 120 chr9 84263710 84263804 -58007640 + MER119 DNA MER1_type 85 182 -401 882 133 31 0 chr9 84263804 84263932 -58007512 - FLAM_C SINE Alu 0 133 2 1634 186 68 120 chr9 84263932 84264363 -58007081 + MER119 DNA MER1_type 182 583 0 2760 145 34 0 chr9 84264615 84265028 -58006416 + MSTA LTR MaLR 2 428 0 458 262 257 5 chr9 84265187 84265374 -58006070 + MIR SINE MIR 27 260 -2 1197 114 0 84 chr9 84265445 84265647 -58005797 - AluSx SINE Alu -3 307 123 541 89 69 13 chr9 84265647 84266097 -58005347 + (TA)n Simple_repeat Simple_repeat 1 474 0 870 137 0 0 chr9 84266097 84266221 -58005223 - AluSx SINE Alu -189 124 1 869 272 37 20 chr9 84266969 84267267 -58004177 + LTR16C LTR ERVL 189 491 0 2085 120 36 3 chr9 84268467 84268768 -58002676 + AluSx SINE Alu 2 312 0 987 202 0 6 chr9 84268984 84269157 -58002287 - MER58A DNA MER1_type -16 208 37 555 73 0 49 chr9 84269458 84269540 -58001904 - L1PA11 LINE L1 -2 6172 6095 544 285 57 6 chr9 84269610 84269768 -58001676 - MIR SINE MIR -66 196 31 267 333 65 48 chr9 84269836 84270172 -58001272 + L2 LINE L2 2049 2390 -924 1407 209 46 40 chr9 84270206 84270556 -58000888 + MLT1H1 LTR MaLR 203 554 -1 194 162 0 27 chr9 84272443 84272480 -57998964 + MIR SINE MIR 116 151 -111 452 283 83 17 chr9 84273235 84273445 -57997999 - MIR SINE MIR -32 230 8 3332 174 102 42 chr9 84273717 84274573 -57996871 - L1MC4a LINE L1 -5 7803 6897 181 245 0 0 chr9 84274577 84274626 -57996818 + MIR SINE MIR 83 131 -77 300 296 61 0 chr9 84274821 84274919 -57996525 + MIR SINE MIR 25 128 -134 225 308 81 81 chr9 84274984 84275156 -57996288 + MER5A DNA MER1_type 18 189 0 615 201 182 0 chr9 84275978 84276132 -57995312 - L1MB5 LINE L1 -6 6168 5987 1973 157 0 7 chr9 84276137 84276442 -57995002 - AluJb SINE Alu -9 303 1 283 234 0 16 chr9 84277030 84277094 -57994350 + MER112 DNA MER1_type 2 64 -196 219 36 0 0 chr9 84277096 84277124 -57994320 + (CA)n Simple_repeat Simple_repeat 2 29 0 641 273 66 20 chr9 84277287 84277485 -57993959 - MIR SINE MIR -46 216 10 330 160 187 0 chr9 84277707 84277782 -57993662 + MIR3 SINE MIR 82 170 -38 384 259 182 28 chr9 84279063 84279206 -57992238 + MER5A DNA MER1_type 25 189 0 3184 117 35 0 chr9 84280575 84281035 -57990409 - MER1A DNA MER1_type 0 529 54 197 95 0 24 chr9 84281111 84281153 -57990291 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 352 345 14 28 chr9 84281999 84282144 -57989300 + MIR SINE MIR 21 163 -99 225 346 87 0 chr9 84282174 84282278 -57989166 - L2 LINE L2 -2 3311 3199 2255 76 3 17 chr9 84282514 84282815 -57988629 - L1PA13 LINE L1 0 6163 5867 365 244 130 0 chr9 84283149 84283272 -57988172 - MIR SINE MIR 0 262 124 555 271 51 114 chr9 84283533 84283865 -57987579 + MLT1L LTR MaLR 1 311 -304 242 281 167 62 chr9 84284309 84284519 -57986925 + MER102a DNA MER1_type 98 329 -1 1090 47 0 0 chr9 84285733 84285861 -57985583 + L1PA4 LINE L1 6025 6152 -3 307 282 0 13 chr9 84286822 84286900 -57984544 - MIR SINE MIR -139 123 47 3233 201 29 80 chr9 84287006 84287953 -57983491 + L1M4 LINE L1 3969 4866 -1280 481 259 94 67 chr9 84288250 84288474 -57982970 - MIR SINE MIR -5 257 28 501 211 0 0 chr9 84288536 84288635 -57982809 - MIR3 SINE MIR -6 202 103 1061 289 65 38 chr9 84288694 84289092 -57982352 - MLT1I LTR MaLR 0 409 1 2493 87 3 0 chr9 84290086 84290397 -57981047 - AluSq SINE Alu 0 313 2 283 305 11 0 chr9 84290882 84290977 -57980467 - MIR SINE MIR 0 262 167 279 140 0 0 chr9 84291253 84291303 -57980141 + (CA)n Simple_repeat Simple_repeat 1 50 0 2154 89 33 26 chr9 84292674 84292976 -57978468 + AluSp SINE Alu 1 304 -9 812 263 164 65 chr9 84294808 84295032 -57976412 - MLT1H1 LTR MaLR 0 555 355 678 65 9 19 chr9 84295032 84295139 -57976305 + (TC)n Simple_repeat Simple_repeat 1 106 0 812 263 164 65 chr9 84295139 84295419 -57976025 - MLT1H1 LTR MaLR -200 355 1 484 199 84 23 chr9 84296799 84296930 -57974514 - MIR SINE MIR 0 262 124 24 32 0 0 chr9 84297326 84297357 -57974087 + AT_rich Low_complexity Low_complexity 1 31 0 4541 114 33 6 chr9 84297359 84298025 -57973419 - L1PA16 LINE L1 -9 6157 5474 1510 231 62 42 chr9 84299225 84299706 -57971738 - L1ME3A LINE L1 -158 6012 5522 2321 101 10 0 chr9 84299907 84300215 -57971229 + AluSx SINE Alu 1 311 -1 181 292 115 31 chr9 84300778 84300874 -57970570 - L2 LINE L2 -2029 1285 1182 1318 150 29 12 chr9 84301283 84301523 -57969921 + L1MB7 LINE L1 5941 6184 0 1213 250 25 25 chr9 84301523 84301919 -57969525 + L1M4 LINE L1 4983 5378 -768 619 277 118 57 chr9 84302040 84302531 -57968913 - LTR33 LTR ERVL 0 521 1 2230 91 0 56 chr9 84302634 84302954 -57968490 - AluY SINE Alu -9 302 1 496 270 51 39 chr9 84303615 84303793 -57967651 + L2 LINE L2 3132 3311 -2 573 72 0 0 chr9 84303932 84304015 -57967429 + (TC)n Simple_repeat Simple_repeat 2 84 0 291 220 0 0 chr9 84304359 84304418 -57967026 + MER112 DNA MER1_type 13 71 -189 548 209 8 47 chr9 84304418 84304547 -57966897 - L2 LINE L2 -1 3312 3189 275 264 91 0 chr9 84304579 84304689 -57966755 + MER112 DNA MER1_type 141 260 0 392 294 173 45 chr9 84304731 84305326 -57966118 - L2 LINE L2 -939 2375 1705 5879 130 7 14 chr9 84305384 84306481 -57964963 + L1PB2 LINE L1 5053 6143 -8 438 158 18 35 chr9 84306644 84306815 -57964629 + (TG)n Simple_repeat Simple_repeat 2 169 0 269 118 26 26 chr9 84306829 84306905 -57964539 + (TG)n Simple_repeat Simple_repeat 1 76 0 2207 163 89 25 chr9 84307791 84308125 -57963319 + MSTB1 LTR MaLR 1 367 -65 2787 23 0 0 chr9 84308125 84308434 -57963010 - AluY SINE Alu -2 309 1 2207 163 89 25 chr9 84308434 84308505 -57962939 + MSTB1 LTR MaLR 367 432 0 361 354 51 6 chr9 84308594 84308752 -57962692 - MIR SINE MIR -72 190 26 2225 103 7 0 chr9 84309137 84309437 -57962007 + AluSx SINE Alu 1 302 -10 738 166 101 96 chr9 84310690 84310780 -57960664 - MER3 DNA MER1_type -2 207 119 2194 98 10 7 chr9 84310780 84311086 -57960358 - AluSx SINE Alu -2 310 4 738 166 101 96 chr9 84311086 84311194 -57960250 - MER3 DNA MER1_type -90 119 8 402 236 186 7 chr9 84311215 84311355 -57960089 - MER5A DNA MER1_type -6 183 19 212 295 45 27 chr9 84311983 84312095 -57959349 - MIR SINE MIR -70 192 79 197 257 101 128 chr9 84312687 84312818 -57958626 - L2 LINE L2 -491 2823 2697 2387 85 0 3 chr9 84312818 84313123 -57958321 + AluSq SINE Alu 1 304 -9 197 257 101 128 chr9 84313123 84313170 -57958274 - L2 LINE L2 -617 2697 2650 432 183 12 24 chr9 84313716 84313798 -57957646 + MER5A DNA MER1_type 11 91 -98 180 282 56 70 chr9 84314270 84314341 -57957103 - MER5A DNA MER1_type 0 189 120 * 234 299 55 48 chr9 84314292 84314420 -57957024 + MER5A DNA MER1_type 30 151 -27 180 158 0 0 chr9 84314845 84314883 -57956561 + (TA)n Simple_repeat Simple_repeat 2 39 0 872 282 61 39 chr9 84314907 84315289 -57956155 + L1ME LINE L1 5295 5695 -475 2271 108 0 3 chr9 84315289 84315584 -57955860 + AluSx SINE Alu 1 294 -18 872 282 61 39 chr9 84315584 84315659 -57955785 + L1ME LINE L1 5695 5767 -403 193 177 0 48 chr9 84315669 84315731 -57955713 + (CATA)n Simple_repeat Simple_repeat 1 59 0 289 316 172 14 chr9 84315792 84316001 -57955443 - MIR SINE MIR -1 261 20 186 43 0 0 chr9 84316149 84316172 -57955272 + (CA)n Simple_repeat Simple_repeat 2 24 0 247 260 55 71 chr9 84316971 84317098 -57954346 + L2 LINE L2 2139 2263 -1051 390 227 62 78 chr9 84317934 84318176 -57953268 + MER102b DNA MER1_type 103 340 -1 24 53 0 0 chr9 84318624 84318662 -57952782 + AT_rich Low_complexity Low_complexity 1 38 0 2888 100 50 9 chr9 84319954 84320373 -57951071 - L1PB3 LINE L1 -2 6152 5717 3902 111 35 6 chr9 84320635 84321147 -57950297 - MER1A DNA MER1_type 0 527 1 322 297 20 0 chr9 84321530 84321631 -57949813 + MIR SINE MIR 47 149 -113 2218 104 7 13 chr9 84322014 84322323 -57949121 - AluJb SINE Alu -5 307 1 357 263 53 53 chr9 84322960 84323093 -57948351 - MER5A DNA MER1_type -41 148 16 297 0 0 0 chr9 84323653 84323686 -57947758 + (TG)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr9 84323976 84323996 -57947448 + (A)n Simple_repeat Simple_repeat 1 20 0 1234 232 71 67 chr9 84324236 84324685 -57946759 + LTR37B LTR ERV1 16 466 -2 1889 104 77 0 chr9 84325603 84325893 -57945551 - AluSx SINE Alu 0 311 2 323 298 146 34 chr9 84327845 84328050 -57943394 + MIR SINE MIR 2 229 -33 664 283 164 20 chr9 84328057 84328411 -57943033 + MLT1I LTR MaLR 1 405 -4 336 342 33 0 chr9 84329232 84329352 -57942092 + MIR SINE MIR 40 163 -99 195 312 86 0 chr9 84329339 84329432 -57942012 - MIR SINE MIR 0 262 162 * 2317 86 0 0 chr9 84329449 84329729 -57941715 - AluSx SINE Alu -9 303 24 309 192 116 75 chr9 84330176 84330322 -57941122 + L1ME4a LINE L1 5910 6061 -60 5823 63 4 0 chr9 84330340 84331059 -57940385 - L1PA6 LINE L1 -2 6152 5431 1638 115 172 0 chr9 84332288 84332532 -57938912 + AluSx SINE Alu 1 286 -26 453 36 0 0 chr9 84332532 84332587 -57938857 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 493 253 31 7 chr9 84333141 84333308 -57938136 - MIR SINE MIR -51 211 42 2646 42 0 0 chr9 84333560 84333867 -57937577 + AluY SINE Alu 1 307 -4 2242 85 0 4 chr9 84334183 84334517 -57936927 - AluSg SINE Alu 0 333 1 522 281 26 58 chr9 84334652 84334965 -57936479 + L1MEc LINE L1 1460 1762 -4634 935 285 114 43 chr9 84335852 84336676 -57934768 + L2 LINE L2 2392 3270 -43 183 261 0 0 chr9 84337097 84337143 -57934301 + MIR SINE MIR 97 142 -120 216 97 0 0 chr9 84338263 84338294 -57933150 + (TG)n Simple_repeat Simple_repeat 2 32 0 2063 197 64 26 chr9 84338344 84338508 -57932936 + L1MB4 LINE L1 5660 5816 -364 2283 114 3 0 chr9 84338508 84338815 -57932629 + AluSg SINE Alu 1 308 -2 2063 197 64 26 chr9 84338815 84339161 -57932283 + L1MB4 LINE L1 5816 6179 -1 237 189 19 0 chr9 84340497 84340550 -57930894 + MIR SINE MIR 29 82 -126 194 250 31 0 chr9 84340815 84340879 -57930565 + MIR SINE MIR 112 177 -85 533 333 24 6 chr9 84342109 84342328 -57929116 - MIR SINE MIR -11 251 30 2236 82 0 4 chr9 84342768 84343102 -57928342 + AluSg SINE Alu 1 333 0 1203 8 0 0 chr9 84343460 84343594 -57927850 - L1HS LINE L1 0 6155 6022 434 73 0 15 chr9 84344456 84344524 -57926920 + (CA)n Simple_repeat Simple_repeat 1 67 0 24 91 0 0 chr9 84344924 84344990 -57926454 + AT_rich Low_complexity Low_complexity 1 66 0 543 196 10 0 chr9 84345376 84345478 -57925966 + U13 snRNA snRNA 1 103 -1 2551 58 0 3 chr9 84345577 84345885 -57925559 - AluY SINE Alu -4 307 1 2363 108 0 3 chr9 84345952 84346259 -57925185 - AluSx SINE Alu -6 306 1 290 143 143 0 chr9 84346487 84346550 -57924894 + MER3 DNA MER1_type 13 84 -125 1276 168 107 27 chr9 84346558 84346805 -57924639 + MER3 DNA MER1_type 2271 2552 -72 2506 83 0 6 chr9 84346805 84347118 -57924326 - AluY SINE Alu 0 311 1 1276 168 107 27 chr9 84347118 84347198 -57924246 + MER3 DNA MER1_type 2552 2624 0 218 284 12 37 chr9 84347890 84347971 -57923473 - L2 LINE L2 -4 3309 3231 260 243 0 29 chr9 84348016 84348086 -57923358 + AluJ/monomer SINE Alu 235 302 0 2856 64 0 6 chr9 84348394 84348751 -57922693 + THE1A LTR MaLR 1 355 0 874 271 160 44 chr9 84349104 84349746 -57921698 - L1MC4a LINE L1 -1684 6124 5408 2042 149 0 7 chr9 84349801 84350102 -57921342 + AluJo SINE Alu 1 299 -13 1688 167 35 0 chr9 84350567 84350854 -57920590 + MER2 DNA MER2_type 43 339 -6 1113 132 56 0 chr9 84350856 84351053 -57920391 + L1MA9 LINE L1 6104 6311 -1 198 0 0 0 chr9 84351104 84351126 -57920318 + (A)n Simple_repeat Simple_repeat 1 22 0 236 293 49 12 chr9 84351180 84351262 -57920182 + MIR3 SINE MIR 97 181 -27 493 292 86 72 chr9 84352647 84352843 -57918601 + LTR16C LTR ERVL 138 343 -148 1373 176 59 96 chr9 84352843 84353230 -57918214 - MLT1A2 LTR MaLR -1 373 1 493 292 86 72 chr9 84353230 84353382 -57918062 + LTR16C LTR ERVL 343 491 0 285 200 63 21 chr9 84353750 84353845 -57917599 - L1MC4a LINE L1 -1639 6169 6071 1255 209 171 23 chr9 84354145 84354556 -57916888 + MLT1D LTR MaLR 7 467 0 317 194 194 0 chr9 84354598 84354701 -57916743 - L2 LINE L2 -219 3053 2931 2141 125 6 6 chr9 84354780 84355091 -57916353 - AluSx SINE Alu 0 312 2 192 225 67 67 chr9 84355111 84355200 -57916244 - MIR3 SINE MIR -38 170 82 213 114 0 0 chr9 84356364 84356385 -57915059 + (TAA)n Simple_repeat Simple_repeat 2 25 -11 2728 94 13 11 chr9 84356385 84356759 -57914685 - THE1C LTR MaLR 0 375 1 213 114 0 0 chr9 84356759 84356772 -57914672 + (TAA)n Simple_repeat Simple_repeat 24 36 0 2107 144 0 3 chr9 84357841 84358153 -57913291 + AluSx SINE Alu 1 311 -1 750 139 0 9 chr9 84358415 84358530 -57912914 + FLAM_C SINE Alu 4 117 -16 286 259 199 8 chr9 84362995 84363126 -57908318 + MER5B DNA MER1_type 1 156 -22 349 230 230 7 chr9 84363440 84363592 -57907852 + MIR SINE MIR 48 233 -29 260 337 51 0 chr9 84364960 84365058 -57906386 + MIR SINE MIR 30 132 -76 365 216 54 88 chr9 84365279 84365427 -57906017 + MER103 DNA DNA 4 146 -20 21 57 0 0 chr9 84368490 84368525 -57902919 + AT_rich Low_complexity Low_complexity 1 35 0 12913 116 7 53 chr9 84368749 84371734 -57899710 + L1P3 LINE L1 8 2983 -3478 378 177 138 62 chr9 84371918 84372048 -57899396 + L2 LINE L2 3174 3313 0 632 229 112 19 chr9 84372074 84372288 -57899156 - MIR SINE MIR 0 262 29 3579 197 34 25 chr9 84373233 84373999 -57897445 - L1MB8 LINE L1 0 6178 5406 210 143 0 0 chr9 84374469 84374504 -57896940 + (TG)n Simple_repeat Simple_repeat 2 36 0 435 135 27 0 chr9 84374505 84374579 -57896865 - L1MD2 LINE L1 -4 6355 6280 920 251 80 71 chr9 84375054 84375350 -57896094 - L2 LINE L2 -2 3311 3010 714 265 98 0 chr9 84375350 84375554 -57895890 - MER58A DNA MER1_type 0 224 1 920 251 80 71 chr9 84375554 84375781 -57895663 - L2 LINE L2 -303 3010 2787 1128 245 31 62 chr9 84375848 84376232 -57895212 - L1ME3A LINE L1 -14 6156 5785 5939 113 92 34 chr9 84376260 84376536 -57894908 + Tigger3b DNA MER2_type 114 373 -2655 480 35 0 0 chr9 84376536 84376594 -57894850 + (TA)n Simple_repeat Simple_repeat 2 59 0 2413 64 0 10 chr9 84376594 84376890 -57894554 - AluY SINE Alu -18 293 1 2400 88 0 19 chr9 84376890 84377197 -57894247 - AluSx SINE Alu -11 301 1 5939 113 92 34 chr9 84377197 84377975 -57893469 + Tigger3b DNA MER2_type 372 1231 0 302 112 37 0 chr9 84377990 84378049 -57893395 - L1M1 LINE L1 -529 5775 5710 1077 253 126 35 chr9 84379372 84379989 -57891455 - L2 LINE L2 0 3313 2624 1940 221 70 67 chr9 84380578 84381188 -57890256 - MLT1E2 LTR MaLR -4 622 11 422 338 44 10 chr9 84381701 84381905 -57889539 - L3 LINE CR1 -162 1415 1205 437 281 8 25 chr9 84381960 84382081 -57889363 + L2 LINE L2 3188 3306 -7 1202 37 0 0 chr9 84382972 84383108 -57888336 - AluY SINE Alu -19 292 157 342 0 0 0 chr9 84383736 84383774 -57887670 + (TG)n Simple_repeat Simple_repeat 1 38 0 4227 149 108 25 chr9 84383852 84384691 -57886753 - L1MC2 LINE L1 -2 6342 5434 706 227 74 0 chr9 84385586 84385762 -57885682 + MER3 DNA MER1_type 2 190 -19 416 301 82 64 chr9 84386052 84386093 -57885351 - MLT1I LTR MaLR 0 409 370 2101 104 0 69 chr9 84386093 84386411 -57885033 - AluSx SINE Alu -16 296 1 416 301 82 64 chr9 84386411 84386698 -57884746 - MLT1I LTR MaLR -39 370 75 2306 111 0 3 chr9 84387140 84387446 -57883998 - AluSq SINE Alu -8 305 1 558 254 215 24 chr9 84387960 84388290 -57883154 + L2 LINE L2 1712 2104 -1210 443 254 133 8 chr9 84388328 84388568 -57882876 + L1ME4a LINE L1 5675 5944 -177 276 149 0 0 chr9 84388569 84388616 -57882828 + (CA)n Simple_repeat Simple_repeat 2 48 0 962 158 0 55 chr9 84388646 84388829 -57882615 - AluJo SINE Alu -139 173 1 451 223 18 18 chr9 84389727 84389839 -57881605 - MER103 DNA DNA -1 165 54 460 207 57 36 chr9 84392338 84392478 -57878966 + MER103 DNA DNA 22 164 -2 279 0 0 0 chr9 84392620 84392651 -57878793 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 338 0 24 0 chr9 84392650 84392692 -57878752 + (GA)n Simple_repeat Simple_repeat 1 43 0 1744 151 36 23 chr9 84392868 84393172 -57878272 + AluSq SINE Alu 1 308 -5 2461 142 4 9 chr9 84393728 84394369 -57877075 - L1P4 LINE L1 -560 5606 4971 450 157 0 0 chr9 84394394 84394477 -57876967 + (CA)n Simple_repeat Simple_repeat 2 84 0 919 219 5 0 chr9 84396738 84396953 -57874491 - L1P LINE L1 -961 5185 4970 288 145 43 51 chr9 84397382 84397499 -57873945 + (TA)n Simple_repeat Simple_repeat 2 117 0 1981 153 0 0 chr9 84398732 84399033 -57872411 + AluSx SINE Alu 1 301 -11 1632 172 0 8 chr9 84399574 84399841 -57871603 - AluJo SINE Alu -14 298 34 2220 141 125 10 chr9 84400026 84400410 -57871034 - MSTA LTR MaLR 0 428 1 228 223 10 58 chr9 84401384 84401487 -57869957 + T-rich Low_complexity Low_complexity 2 99 0 512 220 53 33 chr9 84401560 84401710 -57869734 - MER103 DNA DNA 0 166 14 1159 281 37 41 chr9 84402442 84402525 -57868919 - L1ME3A LINE L1 -224 5946 5864 1488 202 84 16 chr9 84402525 84402667 -57868777 + MER2 DNA MER2_type 1 132 -212 2269 91 3 0 chr9 84402667 84402954 -57868490 + AluSp SINE Alu 12 299 -14 1488 202 84 16 chr9 84402954 84403133 -57868311 + MER2 DNA MER2_type 132 344 0 1159 281 37 41 chr9 84403133 84403615 -57867829 - L1ME3A LINE L1 -306 5864 5383 745 191 6 22 chr9 84403621 84403804 -57867640 + CT-rich Low_complexity Low_complexity 1 180 0 479 186 10 0 chr9 84403925 84404027 -57867417 + CT-rich Low_complexity Low_complexity 4 106 0 796 204 0 0 chr9 84404027 84404159 -57867285 - FLAM_C SINE Alu 0 133 2 24 0 0 0 chr9 84404271 84404295 -57867149 + AT_rich Low_complexity Low_complexity 1 24 0 190 295 252 14 chr9 84404307 84404446 -57866998 - L2 LINE L2 0 3313 3142 2323 156 39 21 chr9 84404505 84404942 -57866502 - L1M3 LINE L1 -362 5821 5377 971 160 17 44 chr9 84405763 84405944 -57865500 + MER5B DNA MER1_type 3 178 0 321 202 167 0 chr9 84406155 84406239 -57865205 - MER5A DNA MER1_type -83 106 9 410 273 22 50 chr9 84406286 84406425 -57865019 - L2 LINE L2 -5 3308 3174 242 326 170 15 chr9 84406646 84406916 -57864528 + L2 LINE L2 2136 2447 -867 2260 111 0 0 chr9 84406928 84407226 -57864218 - AluSx SINE Alu -14 298 1 13055 93 2 1 chr9 84407446 84410002 -57861442 + L1PA7 LINE L1 3598 6150 -4 241 318 163 0 chr9 84410016 84410145 -57861299 + MIR3 SINE MIR 36 185 -23 1047 209 9 19 chr9 84410340 84410551 -57860893 - MER3 DNA MER1_type 0 209 1 2003 127 0 45 chr9 84410699 84411007 -57860437 + AluSq SINE Alu 6 299 -14 1204 134 5 35 chr9 84411134 84411335 -57860109 + AluJo SINE Alu 86 280 -32 320 321 28 73 chr9 84411642 84411860 -57859584 + L2 LINE L2 2888 3095 -177 529 114 13 0 chr9 84412087 84412166 -57859278 + L1MB3 LINE L1 6065 6144 -39 23 0 0 0 chr9 84412395 84412418 -57859026 + AT_rich Low_complexity Low_complexity 1 23 0 2494 57 0 0 chr9 84412418 84412714 -57858730 - AluY SINE Alu -15 296 1 235 318 178 16 chr9 84412873 84413002 -57858442 + L2 LINE L2 3123 3272 0 722 202 6 0 chr9 84413005 84413183 -57858261 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 441 323 9 47 chr9 84415773 84416005 -57855439 + L2 LINE L2 2180 2402 -912 914 254 0 0 chr9 84416006 84416179 -57855265 + MER45A DNA AcHobo 1 173 -5 385 351 54 48 chr9 84416322 84416638 -57854806 + L2 LINE L2 2949 3266 -6 376 268 0 10 chr9 84417417 84417514 -57853930 + MER5A DNA MER1_type 10 105 -84 216 0 0 0 chr9 84418148 84418172 -57853272 + (CA)n Simple_repeat Simple_repeat 2 25 0 1991 125 17 3 chr9 84418390 84418678 -57852766 - AluJb SINE Alu -19 293 2 257 331 142 16 chr9 84419357 84419484 -57851960 - MIR SINE MIR -109 153 11 1153 218 19 19 chr9 84419522 84419783 -57851661 - MIR SINE MIR -1 261 1 180 176 0 0 chr9 84420099 84420133 -57851311 + (CA)n Simple_repeat Simple_repeat 1 34 0 949 269 94 20 chr9 84420202 84420605 -57850839 + MLT1L LTR MaLR 73 607 -8 301 218 132 56 chr9 84420621 84420769 -57850675 + MIR3 SINE MIR 3 157 -69 307 321 133 24 chr9 84420885 84421050 -57850394 - MIR3 SINE MIR -1 207 25 297 302 31 78 chr9 84421108 84421237 -57850207 - L2 LINE L2 0 3313 3191 233 237 0 34 chr9 84421245 84421304 -57850140 - L2 LINE L2 -2 3311 3255 444 324 111 19 chr9 84422615 84422822 -57848622 + MIR SINE MIR 25 250 -12 1615 58 106 0 chr9 84423124 84423332 -57848112 - MER30 DNA MER1_type 0 230 1 29 47 0 0 chr9 84423650 84423693 -57847751 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 84424390 84424411 -57847033 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr9 84424528 84424551 -57846893 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 84425984 84426007 -57845437 + GC_rich Low_complexity Low_complexity 1 23 0 394 269 188 50 chr9 84426690 84427010 -57844434 + MER115 DNA AcHobo 10 373 -320 235 319 42 0 chr9 84427107 84427179 -57844265 + LTR16A LTR ERVL 95 169 -281 305 257 55 0 chr9 84427297 84427406 -57844038 + MER115 DNA AcHobo 579 693 0 346 331 48 51 chr9 84428864 84429239 -57842205 + HERVL LTR ERVL 1207 1580 -4074 670 197 0 0 chr9 84429399 84429521 -57841923 - FLAM_A SINE Alu -1 141 20 2815 237 45 0 chr9 84429838 84430565 -57840879 + L1M4 LINE L1 4408 5167 -979 257 315 96 41 chr9 84430565 84431198 -57840246 + L1M2 LINE L1 4 1592 -5257 252 364 7 0 chr9 84431417 84431560 -57839884 + L1PBb LINE L1 230 373 -5831 4895 229 23 78 chr9 84431664 84432810 -57838634 + L1PBb LINE L1 368 1576 -4627 2559 77 0 0 chr9 84432810 84433120 -57838324 - AluY SINE Alu -1 310 1 4895 229 23 78 chr9 84433120 84433538 -57837906 + L1PBb LINE L1 1576 2016 -4187 2010 160 0 0 chr9 84433538 84433844 -57837600 + AluSx SINE Alu 1 306 -6 4895 229 23 78 chr9 84433844 84434161 -57837283 + L1PBb LINE L1 2016 2222 -3981 1603 106 5 0 chr9 84434161 84434368 -57837076 + AluSc SINE Alu 86 293 -16 4895 229 23 78 chr9 84434368 84434572 -57836872 + L1PBb LINE L1 2222 2436 -3767 206 227 8 55 chr9 84434669 84434797 -57836647 + (TATAA)n Simple_repeat Simple_repeat 3 124 0 259 135 0 0 chr9 84434810 84434862 -57836582 - L1 LINE L1 -3738 2408 2357 1508 226 3 8 chr9 84434914 84435294 -57836150 + L1M2 LINE L1 3102 3479 -3369 267 86 0 0 chr9 84435294 84435329 -57836115 + U2 snRNA snRNA 1 35 -153 301 188 0 0 chr9 84435329 84435393 -57836051 + L1M2 LINE L1 3466 3529 -3319 * 4994 164 19 13 chr9 84435389 84436365 -57835079 + L1MC2 LINE L1 5350 6331 -13 413 113 0 0 chr9 84436367 84436429 -57835015 + HY3 scRNA scRNA 3 64 -37 17905 170 12 6 chr9 84436429 84438151 -57833293 - L1PA14 LINE L1 -14 7585 5875 333 0 0 0 chr9 84438151 84438188 -57833256 + (TG)n Simple_repeat Simple_repeat 1 37 0 17905 170 12 6 chr9 84438188 84440932 -57830512 - L1PA14 LINE L1 -1724 5875 3093 13462 143 12 5 chr9 84440946 84443614 -57827830 - L1PA14 LINE L1 -4619 2962 1 257 41 102 20 chr9 84443615 84443664 -57827780 + HY3 scRNA scRNA 49 101 0 8170 27 2 0 chr9 84544090 84545524 -57725920 + L1PA3 LINE L1 4720 6155 0 4492 161 51 2 chr9 84546193 84546638 -57724806 - L1MB2 LINE L1 -7 6164 5742 2344 102 0 3 chr9 84546638 84546943 -57724501 - AluSx SINE Alu -8 304 1 4492 161 51 2 chr9 84546943 84547306 -57724138 - L1MB2 LINE L1 -429 5742 5317 433 31 62 47 chr9 84547666 84547730 -57723714 - MLT1B LTR MaLR -325 65 1 1794 143 0 15 chr9 84547781 84548053 -57723391 - AluSq SINE Alu -45 268 1 532 251 12 12 chr9 84548054 84548221 -57723223 - L1M4 LINE L1 -3600 2546 2380 1328 255 147 14 chr9 84548357 84548800 -57722644 - MLT1J LTR MaLR -8 503 2 373 216 144 18 chr9 84549315 84549426 -57722018 - MIR SINE MIR -111 151 27 189 121 0 0 chr9 84549768 84549801 -57721643 + (GGA)n Simple_repeat Simple_repeat 2 34 0 1956 95 92 11 chr9 84549837 84550110 -57721334 - AluSc SINE Alu -14 295 1 336 272 59 7 chr9 84550126 84550262 -57721182 - L2 LINE L2 -1174 2140 1998 1885 144 25 0 chr9 84550264 84550542 -57720902 + AluJb SINE Alu 3 287 -25 918 195 19 13 chr9 84551928 84552087 -57719357 + FRAM SINE Alu 1 160 -6 4078 160 118 12 chr9 84552118 84553057 -57718387 - L1MB8 LINE L1 -16 6162 5129 233 208 130 0 chr9 84553083 84553160 -57718284 - L1MC5 LINE L1 -38 7923 7837 11635 171 42 17 chr9 84553259 84556451 -57714993 - L1MA7 LINE L1 -2 6289 3004 7060 203 49 29 chr9 84556455 84557516 -57713928 - L1MB8 LINE L1 -996 5150 4112 1506 96 10 0 chr9 84557516 84557724 -57713720 + L1PA13 LINE L1 5951 6160 -3 7060 203 49 29 chr9 84557724 84558105 -57713339 - L1MB8 LINE L1 -2034 4112 3740 742 174 91 0 chr9 84558105 84558226 -57713218 - FLAM_C SINE Alu 0 133 2 7060 203 49 29 chr9 84558226 84558541 -57712903 - L1MB8 LINE L1 -2406 3740 3357 2261 109 0 3 chr9 84559736 84560029 -57711415 - AluSq SINE Alu -21 292 1 2325 109 7 0 chr9 84560460 84560764 -57710680 + AluSx SINE Alu 1 306 -6 2432 80 0 0 chr9 84561864 84562165 -57709279 + AluSq SINE Alu 1 301 -12 562 334 22 66 chr9 84562703 84563068 -57708376 - L2 LINE L2 -1 3271 2923 310 242 0 44 chr9 84563167 84563258 -57708186 + MLT1K LTR MaLR 177 263 -325 232 302 47 0 chr9 84563586 84563672 -57707772 + MIR SINE MIR 164 253 -9 638 307 142 48 chr9 84563838 84564550 -57706894 + L2 LINE L2 2550 3311 -2 929 163 39 0 chr9 84565436 84565589 -57705855 - FRAM SINE Alu -17 159 1 207 387 28 14 chr9 84565633 84565775 -57705669 + L2 LINE L2 1753 1896 -1418 417 206 33 33 chr9 84565778 84565870 -57705574 + MLT1D LTR MaLR 3 94 -411 243 156 0 22 chr9 84565870 84565915 -57705529 + MLT1D LTR MaLR 252 295 -210 1473 220 143 26 chr9 84566571 84567061 -57704383 - LTR10B LTR ERV1 0 547 1 2169 92 0 11 chr9 84567938 84568221 -57703223 - AluSc SINE Alu -15 294 15 2372 97 0 0 chr9 84568224 84568524 -57702920 - AluSx SINE Alu -12 300 1 350 200 50 80 chr9 84568598 84568698 -57702746 + L2 LINE L2 3217 3313 0 869 150 0 0 chr9 84569568 84569695 -57701749 + U4 snRNA snRNA 1 127 -18 663 134 0 0 chr9 84569792 84569889 -57701555 - AluSg/x SINE Alu -6 303 207 1192 241 109 24 chr9 84569983 84570279 -57701165 - L1ME3 LINE L1 0 6162 5893 2271 132 0 0 chr9 84570279 84570583 -57700861 - AluSx SINE Alu -8 304 1 1192 241 109 24 chr9 84570583 84570644 -57700800 - L1ME3 LINE L1 -269 5893 5839 1839 173 0 3 chr9 84570644 84570945 -57700499 - AluJo SINE Alu -11 301 2 1192 241 109 24 chr9 84570945 84571043 -57700401 - L1ME3 LINE L1 -323 5839 5667 2543 52 0 0 chr9 84571628 84571934 -57699510 + AluY SINE Alu 1 306 -5 2287 102 0 3 chr9 84572170 84572464 -57698980 + AluSg SINE Alu 1 293 -17 1976 128 7 14 chr9 84572845 84573142 -57698302 + AluSx SINE Alu 3 297 -15 7665 56 3 2 chr9 84573349 84574728 -57696716 - L1PA8 LINE L1 -8 6164 4789 638 291 48 88 chr9 84574743 84575100 -57696344 + L1ME3A LINE L1 5616 5947 -223 324 0 0 0 chr9 84575100 84575136 -57696308 + (CA)n Simple_repeat Simple_repeat 2 37 0 638 291 48 88 chr9 84575136 84575326 -57696118 + L1ME3A LINE L1 5947 6143 -27 683 211 9 0 chr9 84576374 84576488 -57694956 + FLAM_C SINE Alu 3 117 -26 1536 179 198 15 chr9 84576578 84576886 -57694558 - MLT1F1 LTR MaLR -5 562 312 198 71 0 0 chr9 84576886 84576914 -57694530 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 1536 179 198 15 chr9 84576914 84577057 -57694387 - MLT1F1 LTR MaLR -255 312 1 1725 126 16 12 chr9 84577126 84577381 -57694063 + L1PB4 LINE L1 5893 6148 -8 707 120 0 56 chr9 84577381 84577505 -57693939 - L1MB2 LINE L1 -16 6155 6038 2105 66 16 66 chr9 84577555 84577738 -57693706 - L1PB1 LINE L1 -7 6144 5982 2207 124 0 0 chr9 84577738 84578037 -57693407 - AluSq SINE Alu -14 299 1 2105 66 16 66 chr9 84578037 84578171 -57693273 - L1PB1 LINE L1 -169 5982 5843 5328 85 15 14 chr9 84578171 84578479 -57692965 - THE1A-int LTR MaLR -847 733 427 2323 74 0 17 chr9 84578479 84578776 -57692668 - AluSg SINE Alu -18 292 1 5328 85 15 14 chr9 84578776 84579198 -57692246 - THE1A-int LTR MaLR -1153 427 2 2932 76 3 0 chr9 84579199 84579553 -57691891 - THE1A LTR MaLR 0 355 1 4659 194 7 7 chr9 84579553 84580515 -57690929 - L1 LINE L1 -1056 5090 4129 465 264 73 45 chr9 84580645 84580865 -57690579 + MLT1H LTR MaLR 32 257 -292 2164 100 27 0 chr9 84581696 84581997 -57689447 - AluY SINE Alu -2 309 1 183 222 44 22 chr9 84582108 84582153 -57689291 + L2 LINE L2 3208 3253 -19 265 200 0 113 chr9 84582190 84582270 -57689174 + MIR3 SINE MIR 106 176 -32 202 317 188 0 chr9 84582429 84582530 -57688914 - MIR SINE MIR -52 210 91 226 300 75 0 chr9 84584157 84584237 -57687207 + MIR SINE MIR 36 121 -87 1528 258 108 10 chr9 84584335 84584616 -57686828 - L2 LINE L2 -67 3246 2994 2326 102 0 3 chr9 84584616 84584929 -57686515 - AluSq SINE Alu -1 312 1 1528 258 108 10 chr9 84584929 84585462 -57685982 - L2 LINE L2 -319 2994 2098 288 253 0 95 chr9 84585462 84585557 -57685887 - L2 LINE L2 -1340 1974 1889 338 221 197 16 chr9 84585712 84585834 -57685610 + L2 LINE L2 3170 3313 0 23 0 0 0 chr9 84586218 84586241 -57685203 + GC_rich Low_complexity Low_complexity 1 23 0 299 274 0 60 chr9 84586309 84586426 -57685018 + C-rich Low_complexity Low_complexity 3 112 0 2423 15 0 7 chr9 84586988 84587258 -57684186 - AluYb8 SINE Alu -16 302 35 181 250 0 42 chr9 84587497 84587545 -57683899 - L2 LINE L2 0 3313 3268 1115 276 55 55 chr9 84587785 84588296 -57683148 - LTR33 LTR ERVL -8 513 3 4201 217 50 5 chr9 84589034 84590067 -57681377 + L1M4 LINE L1 3876 4955 -1191 22 0 0 0 chr9 84590067 84590089 -57681355 + AT_rich Low_complexity Low_complexity 1 22 0 1986 122 10 14 chr9 84590094 84590382 -57681062 - AluSx SINE Alu -23 289 3 700 218 5 93 chr9 84591093 84591326 -57680118 + FRAM SINE Alu 1 216 0 216 250 0 0 chr9 84591422 84591466 -57679978 - MIR3 SINE MIR -52 156 113 2010 126 20 3 chr9 84592378 84592671 -57678773 - AluSx SINE Alu -14 298 1 1135 165 71 41 chr9 84592676 84592943 -57678501 + L1MB7 LINE L1 5901 6175 -9 1264 281 61 28 chr9 84592966 84593343 -57678101 + L1MB7 LINE L1 4343 4749 -1397 1767 176 7 13 chr9 84593343 84593650 -57677794 + AluJo SINE Alu 1 305 -7 1264 281 61 28 chr9 84593650 84593876 -57677568 + L1MB7 LINE L1 4749 4966 -1180 1355 260 61 5 chr9 84593876 84594352 -57677092 - MLT1H LTR MaLR 0 549 1 2293 101 0 3 chr9 84594457 84594755 -57676689 - AluSx SINE Alu -15 297 1 344 296 6 40 chr9 84594899 84595075 -57676369 + L1MB7 LINE L1 5255 5424 -935 977 112 0 96 chr9 84595077 84595265 -57676179 + AluJb SINE Alu 130 299 -13 343 300 47 24 chr9 84595584 84595754 -57675690 + MER5B DNA MER1_type 1 174 -4 770 208 80 19 chr9 84596133 84596345 -57675099 + L1MB7 LINE L1 5931 6155 -29 2168 96 31 0 chr9 84596553 84596845 -57674599 - AluSx SINE Alu -11 301 1 655 223 132 34 chr9 84596848 84597045 -57674399 + MER20B DNA MER1_type 361 537 -246 2431 28 42 3 chr9 84597045 84597330 -57674114 - AluY SINE Alu -15 296 1 655 223 132 34 chr9 84597330 84597497 -57673947 + MER20B DNA MER1_type 537 783 0 201 143 0 0 chr9 84597675 84597730 -57673714 + (CACCC)n Simple_repeat Simple_repeat 1 55 0 229 333 0 0 chr9 84598707 84598773 -57672671 - Charlie8 DNA MER1_type -2143 274 209 * 1710 216 94 17 chr9 84598767 84599002 -57672442 - MER90 LTR ERV1 -10 604 389 2404 84 0 0 chr9 84599002 84599300 -57672144 + AluSc SINE Alu 2 299 -10 1710 216 94 17 chr9 84599300 84599584 -57671860 - MER90 LTR ERV1 -225 389 3 3046 170 61 16 chr9 84599948 84600792 -57670652 - L1MB8 LINE L1 -319 5859 4975 256 148 49 33 chr9 84600794 84600855 -57670589 + MER5A DNA MER1_type 128 189 0 449 241 138 7 chr9 84600865 84601010 -57670434 - MER5B DNA MER1_type -12 166 3 334 195 11 0 chr9 84601661 84601748 -57669696 + L1MB5 LINE L1 4972 5059 -1087 482 143 61 10 chr9 84602001 84602099 -57669345 + MER4A LTR ERV1 1 103 -561 * 1983 125 3 19 chr9 84602096 84602447 -57668997 + MER4A LTR ERV1 261 664 0 2369 165 73 20 chr9 84602447 84602939 -57668505 + L1MB5 LINE L1 5657 6174 0 616 297 37 53 chr9 84603199 84603532 -57667912 + MLT1G1 LTR MaLR 75 355 -187 486 241 35 9 chr9 84603539 84603655 -57667789 + MLT1G1 LTR MaLR 477 595 0 193 208 170 0 chr9 84603817 84603870 -57667574 - L2 LINE L2 -26 3246 3185 295 271 27 13 chr9 84604818 84604962 -57666482 - MIR SINE MIR -62 146 40 2020 128 0 14 chr9 84606155 84606443 -57665001 + AluSx SINE Alu 1 284 -28 1746 156 33 36 chr9 84606479 84606780 -57664664 - AluJo SINE Alu -12 300 1 683 260 86 38 chr9 84606969 84607388 -57664056 - MER113 DNA MER1_type? -9 512 74 1247 200 75 11 chr9 84607935 84608215 -57663229 + AluJo SINE Alu 1 298 -14 313 164 18 55 chr9 84608215 84608325 -57663119 + GA-rich Low_complexity Low_complexity 1 106 0 729 175 43 81 chr9 84608468 84608679 -57662765 + MSTD LTR MaLR 205 396 0 816 268 10 10 chr9 84608679 84608884 -57662560 - L2 LINE L2 -855 2459 2255 673 220 13 1 chr9 84608884 84609031 -57662413 - L1MC3 LINE L1 -1181 6627 6445 2332 271 64 25 chr9 84609031 84609153 -57662291 - L2 LINE L2 -1404 1910 1794 1171 172 11 0 chr9 84609153 84609339 -57662105 - MER5A DNA MER1_type 0 189 2 2332 271 64 25 chr9 84609339 84609410 -57662034 - L2 LINE L2 -1520 1794 1727 309 109 0 0 chr9 84609410 84609456 -57661988 + (TG)n Simple_repeat Simple_repeat 2 47 0 2332 271 64 25 chr9 84609456 84610073 -57661371 - L2 LINE L2 -1587 1727 1067 226 317 17 0 chr9 84610416 84610476 -57660968 - L2 LINE L2 -10 3303 3243 231 286 14 0 chr9 84610478 84610548 -57660896 + GA-rich Low_complexity Low_complexity 2 72 0 252 0 0 0 chr9 84611000 84611028 -57660416 + (TC)n Simple_repeat Simple_repeat 1 28 0 640 275 92 13 chr9 84611945 84612174 -57659270 - MIR SINE MIR -11 251 18 23 33 0 0 chr9 84612815 84612845 -57658599 + AT_rich Low_complexity Low_complexity 1 30 0 359 206 14 154 chr9 84612989 84613077 -57658367 - L1MC5 LINE L1 -36 7925 7883 2437 68 0 10 chr9 84613077 84613372 -57658072 - AluSp SINE Alu -21 292 1 359 206 14 154 chr9 84613372 84613497 -57657947 - L1MC5 LINE L1 -78 7883 7742 665 297 100 16 chr9 84613522 84613832 -57657612 - L1M4 LINE L1 -2392 3754 3419 344 48 0 0 chr9 84614447 84614489 -57656955 - MER4E LTR ERV1 -73 693 652 400 232 139 82 chr9 84614490 84615038 -57656406 - L1M4 LINE L1 -3006 3140 2562 256 278 133 35 chr9 84615502 84615675 -57655769 - L1M4 LINE L1 -3417 2729 2540 405 262 56 0 chr9 84618632 84618739 -57652705 + MIR SINE MIR 80 192 -70 182 250 196 43 chr9 84618851 84618943 -57652501 - L2 LINE L2 -5 3267 3162 2499 67 0 0 chr9 84619049 84619349 -57652095 - AluY SINE Alu -9 302 3 1438 98 67 44 chr9 84619725 84619950 -57651494 - MER30 DNA MER1_type 0 230 1 781 204 45 0 chr9 84620633 84620790 -57650654 + MER3 DNA MER1_type 3 166 -43 1227 190 46 28 chr9 84620790 84621074 -57650370 - AluJo SINE Alu -23 289 1 541 292 84 6 chr9 84621825 84622003 -57649441 - MIR SINE MIR -11 251 60 251 230 35 11 chr9 84622013 84622100 -57649344 + (TTA)n Simple_repeat Simple_repeat 2 90 0 361 298 99 36 chr9 84622546 84623069 -57648375 - L2 LINE L2 -7 3265 2684 2148 103 21 10 chr9 84623744 84624035 -57647409 - AluSc SINE Alu -15 294 1 225 0 0 0 chr9 84624531 84624556 -57646888 + (T)n Simple_repeat Simple_repeat 1 25 0 341 291 57 38 chr9 84624823 84624981 -57646463 + MIR3 SINE MIR 3 163 -45 1088 224 83 65 chr9 84625158 84625556 -57645888 + MER113 DNA MER1_type? 2 406 -115 2202 112 0 0 chr9 84625705 84626001 -57645443 + AluSx SINE Alu 13 308 -4 2344 94 3 0 chr9 84626428 84626727 -57644717 - AluSx SINE Alu -12 300 1 821 257 108 97 chr9 84626775 84626875 -57644569 + L2 LINE L2 2594 2691 -622 515 187 37 9 chr9 84626875 84626982 -57644462 + MER5A DNA MER1_type 46 155 -34 821 257 108 97 chr9 84626982 84627085 -57644359 + L2 LINE L2 2691 2791 -522 1406 185 98 56 chr9 84627085 84627512 -57643932 + LTR56 LTR ERV1 1 445 0 821 257 108 97 chr9 84627512 84627880 -57643564 + L2 LINE L2 2791 3292 -21 362 234 113 0 chr9 84628256 84628380 -57643064 + MER103 DNA DNA 7 144 -22 213 333 26 26 chr9 84628972 84629050 -57642394 - MIR SINE MIR -112 96 19 331 51 0 0 chr9 84631527 84631566 -57639878 + (CA)n Simple_repeat Simple_repeat 2 40 0 331 252 48 58 chr9 84631911 84632014 -57639430 - L2 LINE L2 -2 3270 3169 1600 137 79 7 chr9 84632056 84632334 -57639110 + AluJb SINE Alu 14 311 -1 220 269 28 19 chr9 84632347 84632455 -57638989 + GA-rich Low_complexity Low_complexity 6 114 0 1258 187 93 25 chr9 84633408 84633686 -57637758 + AluJb SINE Alu 1 297 -15 516 213 11 0 chr9 84633744 84633839 -57637605 + FLAM_A SINE Alu 22 116 -26 250 33 0 0 chr9 84633839 84633869 -57637575 + (TAAA)n Simple_repeat Simple_repeat 3 132 0 1544 153 41 76 chr9 84633884 84634198 -57637246 + AluJb SINE Alu 3 305 -7 351 243 0 48 chr9 84637758 84637861 -57633583 + MER5B DNA MER1_type 77 174 -4 572 258 101 0 chr9 84639097 84639256 -57632188 + MIR SINE MIR 1 175 -87 630 251 139 0 chr9 84639845 84640032 -57631412 + MIR SINE MIR 1 213 -49 2486 139 228 5 chr9 84640406 84640959 -57630485 - Tigger1 DNA MER2_type -7 2411 1736 748 201 0 47 chr9 84640959 84641128 -57630316 - FRAM SINE Alu -15 161 1 9664 129 30 22 chr9 84641128 84642839 -57628605 - Tigger1 DNA MER2_type -671 1747 24 328 306 0 0 chr9 84642859 84642944 -57628500 + Cheshire DNA MER1_type 5 89 -2331 1916 150 31 0 chr9 84642947 84643240 -57628204 + AluSx SINE Alu 1 302 -10 2109 121 0 31 chr9 84643254 84643576 -57627868 + AluSx SINE Alu 1 312 0 7181 192 105 36 chr9 84643588 84643804 -57627640 + Cheshire DNA MER1_type 78 278 -2142 1696 167 14 3 chr9 84643804 84644091 -57627353 - AluJb SINE Alu -17 295 6 7181 192 105 36 chr9 84644091 84646065 -57625379 + Cheshire DNA MER1_type 278 2420 0 180 0 0 0 chr9 84647052 84647072 -57624372 + (A)n Simple_repeat Simple_repeat 1 20 0 1864 167 119 80 chr9 84647098 84647515 -57623929 - MLT1D LTR MaLR 0 505 106 2594 61 3 0 chr9 84647515 84647825 -57623619 - AluY SINE Alu 0 311 1 1717 188 3 7 chr9 84647831 84648135 -57623309 - AluJo SINE Alu -9 303 1 1864 167 119 80 chr9 84648135 84648196 -57623248 - MLT1D LTR MaLR -403 102 1 373 214 0 0 chr9 84648196 84648265 -57623179 - LTR40a LTR ERVL -450 69 1 1172 193 37 8 chr9 84648265 84648508 -57622936 - HERVL40 LTR ERVL -3 5527 5278 429 319 21 11 chr9 84648582 84648773 -57622671 - MER89-int LTR ERV1 -412 6389 6197 1057 254 7 4 chr9 84648991 84649271 -57622173 - AluY SINE Alu -16 285 5 1598 158 44 22 chr9 84649778 84650051 -57621393 + AluJb SINE Alu 1 279 -33 1971 125 80 14 chr9 84650051 84650403 -57621041 + THE1C LTR MaLR 1 375 0 2002 142 3 0 chr9 84651498 84651787 -57619657 - AluSx SINE Alu -12 300 11 1936 136 7 20 chr9 84651939 84652234 -57619210 - AluSx SINE Alu -20 292 2 702 236 155 10 chr9 84653375 84653672 -57617772 - L1MC4 LINE L1 -581 7461 7122 299 152 0 15 chr9 84653717 84653783 -57617661 + (TG)n Simple_repeat Simple_repeat 2 66 0 411 277 145 38 chr9 84654375 84654534 -57616910 - MER5B DNA MER1_type -2 176 1 343 201 104 37 chr9 84654580 84654714 -57616730 + L1ME4a LINE L1 5978 6120 -1 234 0 0 0 chr9 84654720 84654746 -57616698 + (TTATG)n Simple_repeat Simple_repeat 3 28 0 2035 97 93 0 chr9 84655891 84656170 -57615274 + AluSx SINE Alu 1 305 -7 1542 168 20 0 chr9 84656343 84656587 -57614857 + AluJb SINE Alu 1 249 -63 827 163 0 0 chr9 84656613 84656736 -57614708 + FLAM_C SINE Alu 1 123 -20 267 292 54 31 chr9 84656755 84656885 -57614559 + L1M4 LINE L1 4052 4184 -1962 1816 187 0 10 chr9 84656949 84657249 -57614195 + AluJb SINE Alu 1 297 -15 1931 170 0 0 chr9 84657400 84657700 -57613744 + AluSx SINE Alu 1 300 -12 5253 112 42 14 chr9 84657750 84659061 -57612383 + L1PA13 LINE L1 4801 6145 -18 3047 203 59 72 chr9 84659225 84660653 -57610791 + L1M4c LINE L1 2314 3723 -2659 548 164 29 0 chr9 84660700 84660804 -57610640 + L1MB3 LINE L1 6060 6166 -17 1090 129 0 0 chr9 84660882 84661037 -57610407 + AluSp/q SINE Alu 156 310 -3 1586 188 53 17 chr9 84661062 84661657 -57609787 + L1M4c LINE L1 2284 2907 -3475 723 263 32 19 chr9 84661666 84661952 -57609492 + L1ME2 LINE L1 5456 5774 -410 294 238 86 0 chr9 84661966 84662071 -57609373 + L1ME2 LINE L1 5839 5952 -212 21 36 0 0 chr9 84662424 84662452 -57608992 + AT_rich Low_complexity Low_complexity 1 28 0 634 242 42 65 chr9 84662707 84662922 -57608522 - MER63A DNA MER1_type 0 210 1 2448 40 0 0 chr9 84663425 84663734 -57607710 + AluY SINE Alu 5 313 0 285 210 0 0 chr9 84664165 84664227 -57607217 + CT-rich Low_complexity Low_complexity 5 66 0 558 155 0 155 chr9 84664238 84664386 -57607058 - FLAM_C SINE Alu -18 125 1 3997 114 3 15 chr9 84664428 84665042 -57606402 - L1PA15 LINE L1 -2 6163 5557 274 288 15 0 chr9 84665116 84665182 -57606262 + polypyrimidine Low_complexity Low_complexity 1 67 0 21 0 0 0 chr9 84665550 84665571 -57605873 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr9 84665674 84665699 -57605745 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6053 17 0 1 chr9 84665717 84666367 -57605077 - SVA Other Other -4 1382 734 520 44 15 0 chr9 84666460 84666528 -57604916 + L1PA16 LINE L1 6089 6157 -9 620 206 73 18 chr9 84666545 84666719 -57604725 - L1MC3 LINE L1 -1167 6636 6449 3182 187 42 17 chr9 84666719 84667356 -57604088 + MER82 DNA MER2_type 1 653 0 1041 271 130 13 chr9 84667799 84668506 -57602938 - L1ME3A LINE L1 -214 5956 5163 1919 149 0 34 chr9 84668506 84668827 -57602617 - AluJo SINE Alu -2 310 1 1253 107 17 0 chr9 84668833 84669056 -57602388 - AluSg/x SINE Alu 0 328 103 2102 149 117 12 chr9 84669237 84669647 -57601797 + MSTB2 LTR MaLR 5 457 0 2178 123 3 10 chr9 84669800 84670109 -57601335 + AluSx SINE Alu 1 307 -5 23 0 0 0 chr9 84670212 84670235 -57601209 + AT_rich Low_complexity Low_complexity 1 23 0 1173 195 55 18 chr9 84670293 84670565 -57600879 + MER58B DNA MER1_type 23 304 -37 1307 173 40 75 chr9 84670574 84670860 -57600584 + LTR40b LTR ERVL 127 400 -62 2284 118 0 0 chr9 84670860 84671164 -57600280 - AluSx SINE Alu -8 304 1 1307 173 40 75 chr9 84671164 84671223 -57600221 + LTR40b LTR ERVL 400 460 -2 4426 230 83 53 chr9 84671238 84672788 -57598656 + HERVL40 LTR ERVL 17 1612 -3918 7578 248 40 30 chr9 84672790 84674387 -57597057 + HERVL40 LTR ERVL 2528 4107 -1423 2506 54 0 16 chr9 84674387 84674701 -57596743 + AluY SINE Alu 2 310 -1 7578 248 40 30 chr9 84674701 84675103 -57596341 + HERVL40 LTR ERVL 4107 4553 -977 2139 125 31 0 chr9 84675103 84675269 -57596175 - AluSx SINE Alu -13 299 119 441 0 0 0 chr9 84675269 84675318 -57596126 + (TG)n Simple_repeat Simple_repeat 2 50 0 2139 125 31 0 chr9 84675318 84675440 -57596004 - AluSx SINE Alu -193 119 2 7578 248 40 30 chr9 84675440 84675560 -57595884 + HERVL40 LTR ERVL 4553 4670 -860 306 0 0 0 chr9 84676053 84676087 -57595357 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2116 106 7 3 chr9 84676087 84676370 -57595074 - AluSg SINE Alu -26 284 1 2465 48 0 22 chr9 84676758 84677070 -57594374 - AluY SINE Alu -6 305 1 1202 154 133 10 chr9 84677071 84677461 -57593983 + LTR54 LTR ERV1 19 504 -6 381 47 16 16 chr9 84677623 84677687 -57593757 + THE1C-int LTR MaLR 1517 1580 0 2000 138 65 11 chr9 84677687 84678042 -57593402 + THE1C LTR MaLR 1 374 -1 547 263 4 112 chr9 84678966 84679049 -57592395 - MER58C DNA MER1_type -2205 215 125 2126 107 7 17 chr9 84679049 84679348 -57592096 - AluSx SINE Alu -16 296 1 547 263 4 112 chr9 84679348 84679387 -57592057 - MER58C DNA MER1_type -2295 125 83 1959 151 3 0 chr9 84679387 84679672 -57591772 - AluSx SINE Alu -26 286 1 547 263 4 112 chr9 84679672 84679780 -57591664 - MER58C DNA MER1_type -2337 83 9 202 317 33 0 chr9 84680256 84680316 -57591128 + L2 LINE L2 3251 3312 -1 4104 157 54 13 chr9 84680927 84681905 -57589539 - L1MB8 LINE L1 -26 6152 5137 2465 48 0 22 chr9 84682284 84682596 -57588848 - AluY SINE Alu -6 305 1 1202 154 133 10 chr9 84682597 84682987 -57588457 + LTR54 LTR ERV1 19 504 -6 1556 214 136 74 chr9 84683848 84684560 -57586884 + MER21B LTR ERV1 1 756 -107 325 356 91 68 chr9 84684867 84685252 -57586192 - L2 LINE L2 -4 3268 2875 237 95 24 0 chr9 84685553 84685595 -57585849 + MLT1I LTR MaLR 320 362 -47 1780 94 0 8 chr9 84685632 84685866 -57585578 + AluSg SINE Alu 55 286 -24 530 236 50 7 chr9 84685914 84686054 -57585390 + FRAM SINE Alu 1 146 -30 210 37 0 0 chr9 84686058 84686085 -57585359 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2396 65 7 13 chr9 84686706 84687014 -57584430 + AluY SINE Alu 1 306 -5 1973 110 11 0 chr9 84687315 84687588 -57583856 + AluSx SINE Alu 1 276 -36 219 36 0 0 chr9 84687593 84687621 -57583823 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2130 108 6 22 chr9 84688003 84688319 -57583125 + AluY SINE Alu 1 311 0 576 234 238 11 chr9 84688383 84688665 -57582779 + HsTC2 DNA Tc2 17 362 -1536 729 195 340 16 chr9 84688666 84688969 -57582475 + HsTC2 DNA Tc2 1274 1850 -48 488 176 231 0 chr9 84688996 84689104 -57582340 + FLAM_A SINE Alu 1 133 0 883 137 0 0 chr9 84689756 84689887 -57581557 + FRAM SINE Alu 39 169 -7 940 147 13 93 chr9 84690213 84690438 -57581006 + MER46A DNA MER2_type 3 209 -27 280 250 0 36 chr9 84690967 84691051 -57580393 + MER20B DNA MER1_type 1 81 -702 335 281 104 24 chr9 84691061 84691225 -57580219 + L1MC5 LINE L1 7741 7917 -44 217 276 126 0 chr9 84691595 84691682 -57579762 + MIR SINE MIR 165 262 0 236 324 103 21 chr9 84691694 84691839 -57579605 - MIR SINE MIR -75 187 31 2188 102 3 3 chr9 84692054 84692347 -57579097 + AluSg SINE Alu 1 293 -17 1733 207 72 11 chr9 84692396 84692840 -57578604 - L1MB8 LINE L1 0 6178 5708 500 214 84 34 chr9 84692860 84693098 -57578346 + L1ME2 LINE L1 2565 2814 -3332 887 234 150 41 chr9 84693450 84693898 -57577546 + L1ME2 LINE L1 5490 5985 -179 836 193 0 66 chr9 84694061 84694242 -57577202 + FRAM SINE Alu 1 169 -7 2255 108 3 0 chr9 84694332 84694637 -57576807 + AluSx SINE Alu 4 309 -3 281 89 22 0 chr9 84694641 84694686 -57576758 + (TA)n Simple_repeat Simple_repeat 2 47 0 2369 99 3 0 chr9 84696044 84696356 -57575088 + AluSp SINE Alu 1 313 0 475 273 109 0 chr9 84697276 84697404 -57574040 + MIR SINE MIR 46 187 -75 2073 122 3 7 chr9 84698675 84698971 -57572473 - AluSg SINE Alu -15 295 1 1875 100 0 0 chr9 84699421 84699661 -57571783 - AluSc SINE Alu -19 290 51 538 150 88 0 chr9 84699661 84699774 -57571670 - L1MA7 LINE L1 -19 6272 6150 1105 165 0 130 chr9 84699878 84700132 -57571312 + AluJb SINE Alu 82 302 -10 275 225 108 54 chr9 84700176 84700287 -57571157 - L2 LINE L2 0 3313 3197 711 190 0 0 chr9 84700432 84700548 -57570896 - FLAM_A SINE Alu -17 116 1 223 256 77 13 chr9 84700638 84700716 -57570728 + MIR SINE MIR 48 130 -132 1080 146 6 28 chr9 84700719 84700744 -57570700 - AluSg/x SINE Alu -13 297 273 2113 140 0 3 chr9 84700744 84701051 -57570393 + AluSg SINE Alu 1 306 -4 1080 146 6 28 chr9 84701051 84701203 -57570241 - AluSg/x SINE Alu -37 273 124 2124 119 7 3 chr9 84701206 84701508 -57569936 - AluSp SINE Alu -10 303 1 210 242 167 33 chr9 84701512 84701632 -57569812 + MIR SINE MIR 126 261 -1 932 194 100 35 chr9 84701784 84701989 -57569455 + MER33 DNA MER1_type 5 195 -2390 2554 143 19 15 chr9 84701989 84702103 -57569341 + L1MB3 LINE L1 5714 5826 -357 1936 138 13 13 chr9 84702103 84702401 -57569043 + AluJb SINE Alu 1 298 -14 2554 143 19 15 chr9 84702401 84702753 -57568691 + L1MB3 LINE L1 5826 6182 -1 932 194 100 35 chr9 84702753 84702818 -57568626 + MER33 DNA MER1_type 195 298 -2287 1007 181 60 77 chr9 84702818 84703116 -57568328 - AluJo SINE Alu -8 294 2 932 194 100 35 chr9 84703116 84703133 -57568311 + MER33 DNA MER1_type 298 312 -12 347 198 293 0 chr9 84703212 84703318 -57568126 - MER58B DNA MER1_type -3 338 202 479 186 68 42 chr9 84703420 84703538 -57567906 - MER63 DNA MER1_type -314 748 2 664 170 44 22 chr9 84703541 84703676 -57567768 + MER105 DNA DNA 63 200 -4 199 253 53 67 chr9 84703680 84703755 -57567689 - L2 LINE L2 -334 2979 2906 187 175 125 0 chr9 84703922 84703962 -57567482 - L2 LINE L2 -54 3218 3174 527 331 135 35 chr9 84704035 84704495 -57566949 - L2 LINE L2 -180 3092 2587 1342 195 172 0 chr9 84704551 84704987 -57566457 - Charlie1b DNA MER1_type -12 511 1 2968 184 68 21 chr9 84705062 84705786 -57565658 + L1MB8 LINE L1 5415 6172 -6 663 207 150 7 chr9 84705950 84706230 -57565214 - MER33 DNA MER1_type -4 320 1 1822 124 44 47 chr9 84706708 84707070 -57564374 + MER46B DNA MER2_type 1 236 0 24 0 0 0 chr9 84707724 84707748 -57563696 + AT_rich Low_complexity Low_complexity 1 24 0 2076 102 16 23 chr9 84708014 84708318 -57563126 + AluSg SINE Alu 1 302 -8 1612 207 57 109 chr9 84708561 84708718 -57562726 + L1ME2 LINE L1 5448 5612 -552 2092 84 24 30 chr9 84708718 84709014 -57562430 - AluSq SINE Alu -19 294 1 1612 207 57 109 chr9 84709014 84709582 -57561862 + L1ME2 LINE L1 5612 6135 -29 270 323 90 49 chr9 84712840 84713056 -57558388 + L2 LINE L2 2867 3097 -175 309 26 0 0 chr9 84713056 84713094 -57558350 + (TG)n Simple_repeat Simple_repeat 2 39 0 270 323 90 49 chr9 84713094 84713143 -57558301 + L2 LINE L2 3097 3143 -129 230 88 0 0 chr9 84713353 84713387 -57558057 - HSMAR1 DNA Mariner -1253 34 1 * 623 253 16 38 chr9 84713387 84713571 -57557873 - MER58A DNA MER1_type -42 182 3 356 230 180 51 chr9 84713786 84713964 -57557480 + MER63A DNA MER1_type 1 201 -9 2290 102 7 0 chr9 84714261 84714556 -57556888 - AluSx SINE Alu -15 297 1 327 325 134 39 chr9 84714865 84715200 -57556244 + L2 LINE L2 2565 2931 -383 2279 112 6 37 chr9 84715451 84715799 -57555645 + MER1B DNA MER1_type 1 337 0 9610 85 9 2 chr9 84715801 84717076 -57554368 + HSMAR1 DNA Mariner 4 1287 0 404 103 44 0 chr9 84717794 84717862 -57553582 + MADE1 DNA Mariner 10 80 0 635 233 118 48 chr9 84718041 84718312 -57553132 - L1MD2 LINE L1 -15 6344 6055 1174 167 33 14 chr9 84718338 84718553 -57552891 - MER20 DNA MER1_type 0 219 1 1802 208 79 6 chr9 84719700 84720499 -57550945 - L1ME1 LINE L1 -7 6159 5268 2124 104 37 0 chr9 84721172 84721292 -57550152 + AluSx SINE Alu 1 115 -197 225 0 100 0 chr9 84721292 84721332 -57550112 + A-rich Low_complexity Low_complexity 2 45 0 2124 104 37 0 chr9 84721332 84721509 -57549935 + AluSx SINE Alu 115 309 -3 2367 65 3 3 chr9 84721791 84722085 -57549359 + AluY SINE Alu 1 294 -17 575 219 183 18 chr9 84722200 84722419 -57549025 - L1ME1 LINE L1 -1139 5007 4753 21 0 0 0 chr9 84722744 84722765 -57548679 + AT_rich Low_complexity Low_complexity 1 21 0 1839 136 31 3 chr9 84723247 84723366 -57548078 + AluSx SINE Alu 1 115 -197 234 0 0 0 chr9 84723366 84723392 -57548052 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1839 136 31 3 chr9 84723392 84723559 -57547885 + AluSx SINE Alu 115 295 -17 5065 91 11 0 chr9 84723868 84724572 -57546872 - L1PA13 LINE L1 0 6163 5452 24 0 0 0 chr9 84725536 84725560 -57545884 + AT_rich Low_complexity Low_complexity 1 24 0 1899 112 69 4 chr9 84725884 84726161 -57545283 - AluSc SINE Alu -14 295 1 383 252 64 64 chr9 84726350 84726568 -57544876 - MLT1K LTR MaLR -3 585 368 2050 134 3 0 chr9 84726679 84726985 -57544459 - AluSx SINE Alu -5 307 1 554 135 10 0 chr9 84727177 84727273 -57544171 + L1MD3 LINE L1 6748 6844 -1151 1424 165 34 34 chr9 84727273 84727570 -57543874 + AluJo SINE Alu 2 298 -4 231 302 0 0 chr9 84727680 84727766 -57543678 + L1MC4 LINE L1 6618 6703 -1339 291 54 0 0 chr9 84727790 84727827 -57543617 + (CA)n Simple_repeat Simple_repeat 2 38 0 2038 138 0 0 chr9 84729266 84729556 -57541888 + AluSx SINE Alu 1 290 -22 2243 100 7 0 chr9 84730025 84730326 -57541118 - AluY SINE Alu -8 303 1 690 210 18 42 chr9 84730328 84730495 -57540949 - FRAM SINE Alu -13 163 1 2253 88 7 26 chr9 84730539 84730844 -57540600 - AluSq SINE Alu -14 299 1 1981 133 3 13 chr9 84730844 84731152 -57540292 - AluSx SINE Alu -7 305 1 797 199 124 0 chr9 84731481 84731667 -57539777 + MER3 DNA MER1_type 1 209 0 189 0 0 0 chr9 84731806 84731827 -57539617 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 932 138 117 5 chr9 84731837 84732025 -57539419 + MER2 DNA MER2_type 136 344 -1 2094 126 14 3 chr9 84732749 84733043 -57538401 - AluSx SINE Alu -15 297 1 1263 139 22 0 chr9 84733102 84733325 -57538119 - L1MA4 LINE L1 -3 6297 6070 392 148 107 49 chr9 84733872 84733994 -57537450 + MER3 DNA MER1_type 40 168 -41 2195 115 3 3 chr9 84734326 84734631 -57536813 - AluSx SINE Alu -3 309 5 480 151 31 0 chr9 84735637 84735752 -57535692 - L1P5 LINE L1 -564 5587 5469 2189 103 3 10 chr9 84735941 84736243 -57535201 - AluSc SINE Alu -9 300 1 203 156 0 0 chr9 84736370 84736402 -57535042 + L2 LINE L2 2932 2963 -309 224 274 0 16 chr9 84736696 84736758 -57534686 + L2 LINE L2 3195 3255 -58 234 271 176 0 chr9 84737289 84737374 -57534070 + MER94 DNA DNA 1 100 -34 2121 131 0 0 chr9 84738205 84738517 -57532927 - AluSx SINE Alu 0 312 1 1278 165 31 47 chr9 84739016 84739271 -57532173 + AluJo SINE Alu 42 292 -20 2468 74 6 0 chr9 84739941 84740252 -57531192 - AluSp SINE Alu 0 313 1 241 328 210 35 chr9 84740740 84741277 -57530167 - L2 LINE L2 -649 2665 2035 1051 171 132 29 chr9 84741938 84742222 -57529222 - MSTD LTR MaLR 0 396 51 1961 154 0 7 chr9 84742222 84742528 -57528916 - AluSx SINE Alu -6 306 3 1051 171 132 29 chr9 84742528 84742569 -57528875 - MSTD LTR MaLR -345 51 16 1833 104 117 3 chr9 84742902 84743210 -57528234 - THE1C-int LTR MaLR -1237 343 1 1738 131 125 12 chr9 84743210 84743547 -57527897 - THE1C LTR MaLR 0 375 1 4371 84 59 12 chr9 84744149 84744830 -57526614 - L1MA2 LINE L1 0 6304 5592 12752 162 32 32 chr9 84744830 84747626 -57523818 - L1 LINE L1 -1168 4978 2183 489 239 165 18 chr9 84747919 84748137 -57523307 + L1ME3A LINE L1 5478 5727 -435 330 307 53 9 chr9 84748143 84748257 -57523187 + L1ME3A LINE L1 5814 5932 -238 1059 202 20 10 chr9 84748265 84748468 -57522976 + AluJb SINE Alu 106 310 -2 1870 130 16 52 chr9 84748958 84749266 -57522178 - AluSx SINE Alu -15 297 1 230 326 204 0 chr9 84749493 84749640 -57521804 - L1ME LINE L1 -458 5663 5487 276 227 208 19 chr9 84750177 84750331 -57521113 - MER112 DNA MER1_type -9 251 69 434 180 25 82 chr9 84750913 84751035 -57520409 - MIR SINE MIR -18 244 130 2070 139 20 0 chr9 84751219 84751520 -57519924 - AluSx SINE Alu -3 309 3 2304 115 0 0 chr9 84751612 84751917 -57519527 + AluSq SINE Alu 1 305 -8 326 288 102 9 chr9 84752405 84752620 -57518824 - L1ME LINE L1 -297 5824 5590 911 293 93 44 chr9 84752633 84753220 -57518224 + L2 LINE L2 2434 3047 -225 183 289 211 0 chr9 84753240 84753316 -57518128 + L2 LINE L2 3214 3305 -8 21 57 0 0 chr9 84753981 84754016 -57517428 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr9 84754614 84754634 -57516810 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 393 319 69 34 chr9 84754829 84755033 -57516411 + MIR SINE MIR 20 230 -32 1808 168 3 31 chr9 84756688 84757009 -57514435 + AluJb SINE Alu 1 312 0 2055 97 19 39 chr9 84757671 84757982 -57513462 + AluSx SINE Alu 1 305 -7 230 98 49 0 chr9 84758028 84758069 -57513375 - L1MB7 LINE L1 0 6184 6142 263 300 64 39 chr9 84758218 84758391 -57513053 - HAL1b LINE L1 -614 734 552 1469 155 155 11 chr9 84758391 84758656 -57512788 - AluJo SINE Alu -9 303 1 263 300 64 39 chr9 84758656 84758715 -57512729 - HAL1b LINE L1 -796 552 496 903 145 0 0 chr9 84758903 84759034 -57512410 - FLAM_C SINE Alu -2 131 1 2264 92 14 0 chr9 84759274 84759569 -57511875 - AluSp SINE Alu -14 299 1 1787 147 11 7 chr9 84761322 84761608 -57509836 - AluJo SINE Alu -15 297 11 21 0 0 0 chr9 84762188 84762209 -57509235 + AT_rich Low_complexity Low_complexity 1 21 0 1713 176 0 35 chr9 84762476 84762788 -57508656 + AluJb SINE Alu 3 303 -9 305 167 0 0 chr9 84763045 84763093 -57508351 + MER66B LTR ERV1 298 345 -141 234 0 0 0 chr9 84763106 84763133 -57508311 + MER57A LTR ERV1 10 36 -367 2184 95 16 7 chr9 84763134 84763438 -57508006 - AluSx SINE Alu -5 307 1 1734 166 79 0 chr9 84763442 84763785 -57507659 + MER57A LTR ERV1 25 394 -9 1700 183 45 31 chr9 84763789 84764236 -57507208 + MLT1C LTR MaLR 13 465 -2 2170 119 0 10 chr9 84765001 84765304 -57506140 + AluSg SINE Alu 1 300 -10 1747 151 11 21 chr9 84765366 84765651 -57505793 + AluJo SINE Alu 18 299 -13 1643 154 96 7 chr9 84765653 84765925 -57505519 + AluSq SINE Alu 1 296 -17 5793 64 20 54 chr9 84766025 84766919 -57504525 + SVA Other Other 3 866 -520 1333 95 10 85 chr9 84766933 84767321 -57504123 + SVA Other Other 508 866 -520 5936 70 48 42 chr9 84767338 84768286 -57503158 + SVA Other Other 433 1386 0 453 258 92 71 chr9 84768292 84768618 -57502826 + L1ME4a LINE L1 5787 6119 -2 1945 169 0 0 chr9 84768637 84768932 -57502512 + AluJb SINE Alu 1 295 -17 293 308 192 0 chr9 84768969 84769099 -57502345 - L2 LINE L2 0 3272 3118 204 143 29 0 chr9 84769128 84769163 -57502281 + CT-rich Low_complexity Low_complexity 4 39 0 296 345 0 70 chr9 84770007 84770178 -57501266 - MIR3 SINE MIR -21 187 29 417 280 25 17 chr9 84770560 84770678 -57500766 - MLT1F LTR MaLR -419 123 5 225 200 0 67 chr9 84770696 84770756 -57500688 - HAL1 LINE L1 -2448 59 4 1922 155 3 3 chr9 84771117 84771408 -57500036 + AluSx SINE Alu 1 291 -21 559 277 117 38 chr9 84771531 84771874 -57499570 + MLT1I LTR MaLR 13 382 -27 1944 138 0 14 chr9 84772616 84772907 -57498537 - AluJo SINE Alu -17 295 9 309 245 116 3 chr9 84773432 84773588 -57497856 + MIR SINE MIR 20 246 -16 1521 150 150 19 chr9 84773588 84773895 -57497549 - MER7A DNA MER2_type 0 346 2 244 213 0 43 chr9 84774988 84775082 -57496362 - L1MC4 LINE L1 -1339 6703 6614 420 169 0 0 chr9 84775086 84775163 -57496281 + (TA)n Simple_repeat Simple_repeat 1 77 0 1808 150 36 0 chr9 84775163 84775443 -57496001 - AluJb SINE Alu -22 290 1 650 219 8 8 chr9 84776278 84776401 -57495043 + FLAM_A SINE Alu 2 124 -9 1632 204 7 3 chr9 84776620 84776924 -57494520 + AluJb SINE Alu 1 305 -7 277 318 61 40 chr9 84777125 84777273 -57494171 + L2 LINE L2 2934 3084 -188 2294 92 0 0 chr9 84777694 84777987 -57493457 + AluSc SINE Alu 1 293 -16 855 132 0 22 chr9 84778078 84778214 -57493230 - FLAM_C SINE Alu 0 133 1 225 0 0 0 chr9 84778376 84778401 -57493043 + (CA)n Simple_repeat Simple_repeat 2 26 0 1873 104 47 50 chr9 84778708 84779007 -57492437 + AluSq SINE Alu 1 298 -15 317 263 127 70 chr9 84780378 84780606 -57490838 - L1M2 LINE L1 -5894 955 715 243 0 0 0 chr9 84780641 84780668 -57490776 + (CGGGGG)n Simple_repeat Simple_repeat 3 29 0 332 209 81 23 chr9 84781223 84781309 -57490135 - MIR SINE MIR -146 116 26 397 247 32 0 chr9 84782344 84782437 -57489007 + MER5A DNA MER1_type 9 104 -85 396 282 39 0 chr9 84782806 84782909 -57488535 - L2 LINE L2 -1827 1487 1381 473 251 133 69 chr9 84782911 84783309 -57488135 + MLT1J2 LTR MaLR 3 425 -21 1698 258 46 76 chr9 84783340 84783984 -57487460 - L2 LINE L2 -1966 1348 729 204 40 0 0 chr9 84783984 84784009 -57487435 + (CATA)n Simple_repeat Simple_repeat 2 26 0 1698 258 46 76 chr9 84784009 84784128 -57487316 - L2 LINE L2 -2585 729 608 760 136 0 0 chr9 84784500 84784618 -57486826 + L1MA2 LINE L1 6187 6304 0 2118 105 3 0 chr9 84784627 84784912 -57486532 - AluY SINE Alu -25 286 1 1477 185 43 21 chr9 84784957 84785238 -57486206 - AluJo SINE Alu -23 289 3 1014 233 50 66 chr9 84785241 84785457 -57485987 - HAL1 LINE L1 -482 2025 1807 1183 92 174 0 chr9 84785457 84785653 -57485791 + MER30 DNA MER1_type 1 230 0 1014 233 50 66 chr9 84785653 84785711 -57485733 - HAL1 LINE L1 -700 1807 1750 1941 160 3 31 chr9 84785711 84786030 -57485414 - AluSx SINE Alu -2 310 1 1014 233 50 66 chr9 84786030 84786132 -57485312 - HAL1 LINE L1 -757 1750 1654 2017 117 3 3 chr9 84786187 84786470 -57484974 - AluSx SINE Alu -6 306 24 601 153 0 117 chr9 84786602 84786663 -57484781 + FLAM_A SINE Alu 2 69 -242 198 0 0 0 chr9 84786663 84786685 -57484759 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4454 63 33 0 chr9 84786685 84787256 -57484188 - L1PA6 LINE L1 -18 6136 5547 601 153 0 117 chr9 84787256 84787330 -57484114 + FLAM_A SINE Alu 67 122 -189 1853 160 3 7 chr9 84787348 84787635 -57483809 - AluJo SINE Alu -26 286 1 1071 301 84 63 chr9 84787651 84788459 -57482985 - HAL1 LINE L1 -1682 825 1 279 0 0 0 chr9 84788623 84788654 -57482790 + (TG)n Simple_repeat Simple_repeat 2 32 0 32 0 0 0 chr9 84788827 84788859 -57482585 + AT_rich Low_complexity Low_complexity 1 32 0 2063 117 3 0 chr9 84788862 84789145 -57482299 + AluY SINE Alu 3 286 -25 760 136 0 0 chr9 84789154 84789272 -57482172 - L1MA2 LINE L1 0 6304 6187 562 233 25 148 chr9 84789644 84789763 -57481681 + L2 LINE L2 608 740 -2574 204 40 0 0 chr9 84789763 84789788 -57481656 + (TATG)n Simple_repeat Simple_repeat 2 26 0 562 233 25 148 chr9 84789788 84790025 -57481419 + L2 LINE L2 740 920 -2394 251 27 0 27 chr9 84790035 84790072 -57481372 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 746 107 0 16 chr9 84790122 84790243 -57481201 + L1PA16 LINE L1 5805 5923 -243 357 313 188 17 chr9 84790256 84790432 -57481012 + L2 LINE L2 3066 3271 -1 229 340 75 20 chr9 84790438 84790585 -57480859 + L2 LINE L2 3117 3271 -1 3000 183 64 7 chr9 84790967 84791657 -57479787 + L1M4 LINE L1 4305 5033 -1113 2201 91 21 0 chr9 84794507 84794793 -57476651 - AluSg SINE Alu -18 292 1 21 0 0 0 chr9 84794807 84794828 -57476616 + AT_rich Low_complexity Low_complexity 1 21 0 3995 26 6 0 chr9 84794828 84795296 -57476148 - L1PA3 LINE L1 -3 6152 5682 23 0 0 0 chr9 84795487 84795510 -57475934 + AT_rich Low_complexity Low_complexity 1 23 0 438 179 211 0 chr9 84795978 84796101 -57475343 + MER97b DNA MER1_type? 30 178 -875 27 0 0 0 chr9 84797514 84797541 -57473903 + AT_rich Low_complexity Low_complexity 1 27 0 206 180 16 0 chr9 84797575 84797636 -57473808 + (TA)n Simple_repeat Simple_repeat 1 62 0 226 215 62 0 chr9 84797636 84797701 -57473743 + (TATAA)n Simple_repeat Simple_repeat 2 70 0 193 182 15 15 chr9 84797703 84797769 -57473675 + (TA)n Simple_repeat Simple_repeat 1 66 0 26 30 0 0 chr9 84797804 84797837 -57473607 + AT_rich Low_complexity Low_complexity 1 33 0 200 182 0 18 chr9 84797945 84798000 -57473444 + (TA)n Simple_repeat Simple_repeat 1 54 0 26 50 0 0 chr9 84798067 84798107 -57473337 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr9 84798268 84798290 -57473154 + AT_rich Low_complexity Low_complexity 1 22 0 2524 50 0 7 chr9 84801035 84801338 -57470106 - AluY SINE Alu -10 301 1 343 247 78 71 chr9 84801365 84801519 -57469925 + Charlie8 DNA MER1_type 1 155 -2262 386 271 83 8 chr9 84801752 84801817 -57469627 + MER5B DNA MER1_type 1 60 -118 901 185 0 31 chr9 84801817 84801979 -57469465 + FRAM SINE Alu 1 157 -9 386 271 83 8 chr9 84801979 84802046 -57469398 + MER5B DNA MER1_type 60 143 -35 359 300 73 0 chr9 84802118 84802228 -57469216 - MIR SINE MIR -121 141 24 2119 97 40 3 chr9 84802476 84802775 -57468669 + AluSq SINE Alu 3 312 -1 263 263 127 25 chr9 84803670 84803788 -57467656 + MIR SINE MIR 24 153 -55 2313 91 3 3 chr9 84803878 84804174 -57467270 - AluSq SINE Alu -17 296 1 196 268 152 18 chr9 84804731 84804843 -57466601 + MIR SINE MIR 133 259 -3 2388 68 0 13 chr9 84805262 84805569 -57465875 - AluY SINE Alu -8 303 1 849 216 0 13 chr9 84806538 84806691 -57464753 - FRAM SINE Alu -15 151 1 2470 85 49 23 chr9 84806720 84807109 -57464335 + MLT2A1 LTR ERVL 1 399 -45 204 154 0 0 chr9 84807116 84807168 -57464276 + (TA)n Simple_repeat Simple_repeat 2 53 0 268 98 78 0 chr9 84807169 84807220 -57464224 + MLT2A1 LTR ERVL 399 453 0 2758 45 20 0 chr9 84807220 84807577 -57463867 + HERVL-A1 LTR ERVL 1 364 -5290 * 21539 59 8 4 chr9 84807567 84810366 -57461078 + HERVL-A2 LTR ERVL 2845 5654 0 1484 110 63 0 chr9 84810366 84810603 -57460841 + MLT2A2 LTR ERVL 1 252 -201 1161 148 6 6 chr9 84810728 84810904 -57460540 + AluSg/x SINE Alu 120 295 -15 640 117 0 10 chr9 84811268 84811371 -57460073 + L1MA5A LINE L1 6191 6292 -5 1691 177 3 51 chr9 84811375 84811691 -57459753 + AluJo SINE Alu 1 301 -11 716 85 94 0 chr9 84811787 84811893 -57459551 + FRAM SINE Alu 57 172 -4 2142 89 0 0 chr9 84812144 84812413 -57459031 + AluSq SINE Alu 16 284 -29 411 56 0 0 chr9 84812413 84812467 -57458977 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 598 161 54 0 chr9 84812556 84812668 -57458776 - L1PA16 LINE L1 0 6166 6049 2276 80 28 0 chr9 84812856 84813142 -57458302 - AluY SINE Alu -17 294 1 30 45 0 0 chr9 84814085 84814129 -57457315 + AT_rich Low_complexity Low_complexity 1 44 0 359 258 98 38 chr9 84814240 84814372 -57457072 - L2 LINE L2 0 3272 3133 206 250 0 0 chr9 84814469 84814513 -57456931 - L3b LINE CR1 -353 1230 1187 2811 131 20 173 chr9 84814949 84815745 -57455699 + L1MB8 LINE L1 5444 6100 -78 1968 110 0 0 chr9 84815745 84816000 -57455444 - AluSg SINE Alu -55 255 1 2811 131 20 173 chr9 84816000 84816065 -57455379 + L1MB8 LINE L1 6100 6173 -5 367 272 59 71 chr9 84816067 84816236 -57455208 + HAL1 LINE L1 85 251 -2256 316 304 52 15 chr9 84816545 84816680 -57454764 + HAL1 LINE L1 536 675 -1832 2197 237 180 37 chr9 84816792 84816999 -57454445 + HAL1 LINE L1 855 1031 -1476 2205 103 3 0 chr9 84816999 84817289 -57454155 + AluSq SINE Alu 1 291 -22 2197 237 180 37 chr9 84817289 84817513 -57453931 + HAL1 LINE L1 1031 1222 -1285 25660 36 6 0 chr9 84817513 84821398 -57450046 + L1PA5 LINE L1 2244 6136 -18 2197 237 180 37 chr9 84821398 84822381 -57449063 + HAL1 LINE L1 1222 2473 -34 2130 133 0 3 chr9 84822763 84823065 -57448379 + AluSq SINE Alu 1 301 -12 559 166 123 59 chr9 84823708 84823895 -57447549 - MER105 DNA DNA -3 201 3 2190 100 10 17 chr9 84825672 84825835 -57445609 - AluSx SINE Alu -13 299 137 2250 103 3 3 chr9 84825835 84826135 -57445309 - AluSc SINE Alu -9 300 1 2190 100 10 17 chr9 84826135 84826272 -57445172 - AluSx SINE Alu -175 137 1 522 163 33 0 chr9 84826348 84826440 -57445004 + MER5A DNA MER1_type 18 112 -77 214 240 271 10 chr9 84826365 84826461 -57444983 - MER5A DNA MER1_type -23 166 46 * 1012 153 34 34 chr9 84826831 84827040 -57444404 + MER6B DNA MER2_type 1 209 -1 2078 128 7 16 chr9 84827260 84827564 -57443880 + AluSx SINE Alu 1 301 -11 287 253 60 12 chr9 84827663 84827746 -57443698 - L2 LINE L2 -1 3312 3226 751 164 8 15 chr9 84827896 84828030 -57443414 + FLAM_A SINE Alu 1 133 0 1628 153 95 11 chr9 84829691 84829965 -57441479 + AluJo SINE Alu 1 297 -15 2410 56 0 26 chr9 84830127 84830430 -57441014 - AluY SINE Alu -14 297 3 2119 110 34 0 chr9 84830456 84830748 -57440696 - AluSg SINE Alu -8 302 1 2042 145 3 7 chr9 84832132 84832436 -57439008 + AluJb SINE Alu 1 303 -9 485 202 135 0 chr9 84832481 84832585 -57438859 + FLAM_C SINE Alu 1 118 -25 305 244 16 63 chr9 84832589 84832716 -57438728 - L1MC4 LINE L1 -1308 6734 6614 * 331 275 22 0 chr9 84832670 84832761 -57438683 + L1MC4 LINE L1 6614 6706 -1336 * 334 266 0 21 chr9 84832687 84832781 -57438663 - L1MC4 LINE L1 -1336 6706 6615 665 102 0 54 chr9 84832782 84832968 -57438476 + (TA)n Simple_repeat Simple_repeat 2 177 0 446 90 83 0 chr9 84832932 84833088 -57438356 + (CATAT)n Simple_repeat Simple_repeat 2 170 0 * 428 66 0 97 chr9 84833052 84833248 -57438196 + (TA)n Simple_repeat Simple_repeat 1 177 0 * 2618 84 41 8 chr9 84833294 84833685 -57437759 - MLT2A1 LTR ERVL -40 404 1 867 121 0 0 chr9 84833685 84833826 -57437618 - HERVL-A1 LTR ERVL 0 5654 5514 2148 133 0 0 chr9 84833967 84834260 -57437184 - AluSg SINE Alu -17 293 1 1163 137 0 0 chr9 84835488 84835649 -57435795 - AluJb SINE Alu -14 298 138 1049 157 13 0 chr9 84836465 84836624 -57434820 + AluJb SINE Alu 138 298 -14 2272 99 0 0 chr9 84836867 84837159 -57434285 + AluSx SINE Alu 1 292 -20 242 213 125 98 chr9 84837428 84837845 -57433599 + L1MC5 LINE L1 7498 7925 -36 22 35 0 0 chr9 84838204 84838233 -57433211 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr9 84839165 84839186 -57432258 + (TTA)n Simple_repeat Simple_repeat 2 22 0 307 311 66 0 chr9 84839758 84839864 -57431580 - MIR SINE MIR -89 173 61 1924 159 3 0 chr9 84839889 84840179 -57431265 - AluSx SINE Alu -21 291 1 332 203 34 0 chr9 84840724 84840783 -57430661 - MER5C DNA MER1_type -263 61 1 21 36 0 0 chr9 84841466 84841494 -57429950 + AT_rich Low_complexity Low_complexity 1 28 0 254 248 59 148 chr9 84842439 84842641 -57428803 + MIR SINE MIR 8 191 -71 231 136 91 0 chr9 84842649 84842693 -57428751 - MIR SINE MIR -1 261 214 697 174 0 8 chr9 84842762 84842883 -57428561 - L1MC1 LINE L1 -9 6324 6205 243 246 16 0 chr9 84842936 84842997 -57428447 - MIR3 SINE MIR -7 201 140 4629 146 24 41 chr9 84843009 84843058 -57428386 - L1MB4 LINE L1 -1 6248 6200 2546 69 3 0 chr9 84843058 84843363 -57428081 - AluSp SINE Alu -7 306 1 4629 146 24 41 chr9 84843363 84844070 -57427374 - L1MB4 LINE L1 -49 6200 5523 1959 36 9 0 chr9 84844070 84844295 -57427149 - AluY SINE Alu -2 309 83 4629 146 24 41 chr9 84844295 84844891 -57426553 - L1MB4 LINE L1 -726 5523 4918 1273 130 104 37 chr9 84844916 84845171 -57426273 + L1MA9 LINE L1 5996 6271 -41 1834 159 10 14 chr9 84845171 84845466 -57425978 - AluJo SINE Alu -18 294 1 1273 130 104 37 chr9 84845466 84845479 -57425965 + L1MA9 LINE L1 6271 6282 -30 * 1851 220 34 10 chr9 84845476 84845971 -57425473 - L1MB4 LINE L1 -1280 4935 4429 246 160 0 0 chr9 84846112 84846162 -57425282 + (TAA)n Simple_repeat Simple_repeat 1 50 0 807 303 153 39 chr9 84846304 84847074 -57424370 + L2 LINE L2 1728 2585 -729 2010 169 0 0 chr9 84847306 84847608 -57423836 - AluJb SINE Alu -10 302 1 583 194 90 35 chr9 84847959 84848103 -57423341 + MIR SINE MIR 83 234 -28 2115 87 0 11 chr9 84848197 84848473 -57422971 - AluY SINE Alu -19 292 20 937 171 156 30 chr9 84849574 84849843 -57421601 - MER5C DNA MER1_type 0 324 22 1297 91 57 0 chr9 84849922 84850122 -57421322 - AluSg/x SINE Alu 0 306 97 1387 245 100 33 chr9 84850222 84850472 -57420972 - L1MB4 LINE L1 -3344 2871 2639 1771 152 0 7 chr9 84850472 84850742 -57420702 - AluJb SINE Alu -44 268 1 1387 245 100 33 chr9 84850742 84851296 -57420148 - L1MB4 LINE L1 -3576 2639 2042 189 0 0 0 chr9 84854857 84854878 -57416566 + (T)n Simple_repeat Simple_repeat 1 21 0 1583 179 72 14 chr9 84855678 84855957 -57415487 + AluJo SINE Alu 1 295 -17 225 146 18 18 chr9 84856094 84856149 -57415295 + L1MB7 LINE L1 6122 6176 -8 1496 249 106 52 chr9 84856156 84856437 -57415007 - L1M4 LINE L1 -1997 4149 3885 2248 82 0 54 chr9 84856437 84856754 -57414690 - AluY SINE Alu -11 300 1 1496 249 106 52 chr9 84856754 84856828 -57414616 - L1M4 LINE L1 -2261 3885 3816 2620 170 65 15 chr9 84856828 84857363 -57414081 - MER68 LTR ERV1 0 562 1 1496 249 106 52 chr9 84857363 84858052 -57413392 - L1M4 LINE L1 -2330 3816 3047 264 214 68 10 chr9 84858261 84858364 -57413080 + L1ME3A LINE L1 4165 4273 -1873 2052 133 30 10 chr9 84858376 84858676 -57412768 + AluSx SINE Alu 1 306 -6 1094 153 0 21 chr9 84858676 84858865 -57412579 + AluSg/x SINE Alu 119 303 -9 1337 279 61 42 chr9 84858962 84859386 -57412058 + L1ME3A LINE L1 4282 4697 -1465 1561 172 9 27 chr9 84859386 84859717 -57411727 + L1MB7 LINE L1 5860 6184 0 1337 279 61 42 chr9 84859717 84860872 -57410572 + L1ME3A LINE L1 4697 5844 -318 254 257 71 57 chr9 84861071 84861211 -57410233 + L1ME3A LINE L1 5965 6106 -64 1915 151 3 16 chr9 84861271 84861583 -57409861 + AluJb SINE Alu 1 308 -4 2134 96 8 7 chr9 84862989 84863334 -57408110 + L1P5 LINE L1 5445 5792 -359 195 129 0 0 chr9 84863335 84863366 -57408078 + (TA)n Simple_repeat Simple_repeat 1 31 0 1962 139 0 7 chr9 84863568 84863856 -57407588 - AluJo SINE Alu -20 292 7 2000 174 65 26 chr9 84863902 84864194 -57407250 + Charlie1 DNA MER1_type 2231 2553 -208 2345 86 0 0 chr9 84864194 84864485 -57406959 + AluSc SINE Alu 1 291 -18 2000 174 65 26 chr9 84864485 84864698 -57406746 + Charlie1 DNA MER1_type 2553 2756 -5 193 305 34 0 chr9 84864880 84864939 -57406505 + L3 LINE CR1 1135 1195 -382 21 36 0 0 chr9 84865324 84865352 -57406092 + AT_rich Low_complexity Low_complexity 1 28 0 309 48 0 0 chr9 84865582 84865646 -57405798 + L1MA4 LINE L1 6249 6312 0 2235 102 7 7 chr9 84866978 84867273 -57404171 - AluSx SINE Alu -17 295 1 2544 53 3 0 chr9 84867720 84868020 -57403424 - AluY SINE Alu -10 301 1 636 180 51 67 chr9 84868286 84868464 -57402980 + MER5B DNA MER1_type 4 178 0 744 249 76 23 chr9 84869045 84869061 -57402383 + L1ME4a LINE L1 5680 5694 -427 2259 107 0 10 chr9 84869061 84869371 -57402073 + AluJb SINE Alu 1 307 -5 744 249 76 23 chr9 84869371 84869611 -57401833 + L1ME4a LINE L1 5694 5969 -152 2411 57 0 0 chr9 84869611 84869944 -57401500 + AluY SINE Alu 1 333 0 744 249 76 23 chr9 84869944 84870102 -57401342 + L1ME4a LINE L1 5969 6117 -4 2406 94 0 0 chr9 84870584 84870883 -57400561 + AluSg SINE Alu 1 299 -11 1085 119 0 38 chr9 84871361 84871521 -57399923 - AluSg/x SINE Alu -17 293 140 802 249 21 85 chr9 84871601 84871931 -57399513 - L2 LINE L2 0 3313 3005 1956 143 10 13 chr9 84871931 84872232 -57399212 + AluSx SINE Alu 1 300 -12 1406 187 46 0 chr9 84872391 84872653 -57398791 + AluJo SINE Alu 9 282 -30 384 59 0 0 chr9 84872656 84872707 -57398737 + (CATA)n Simple_repeat Simple_repeat 2 52 0 879 176 132 4 chr9 84873431 84873658 -57397786 + L1MB4 LINE L1 5664 5919 -261 1257 141 0 0 chr9 84873658 84873835 -57397609 - AluJb SINE Alu -2 310 134 2049 129 10 0 chr9 84873835 84874130 -57397314 - AluSc SINE Alu -11 298 1 1922 119 53 7 chr9 84874147 84874432 -57397012 - AluSx SINE Alu -14 298 1 839 213 86 20 chr9 84874432 84874676 -57396768 + L1MB4 LINE L1 5915 6174 -6 1776 176 0 28 chr9 84875475 84875793 -57395651 + AluJb SINE Alu 1 309 -3 243 280 67 13 chr9 84875856 84875931 -57395513 + L2 LINE L2 3234 3312 -1 2276 96 7 0 chr9 84876046 84876338 -57395106 - AluSx SINE Alu -18 294 1 24 32 0 0 chr9 84876520 84876551 -57394893 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr9 84877074 84877101 -57394343 + AT_rich Low_complexity Low_complexity 1 27 0 229 211 0 77 chr9 84877354 84877406 -57394038 + L3 LINE CR1 1530 1577 0 195 250 62 0 chr9 84877787 84877835 -57393609 - L2 LINE L2 -1 3312 3262 230 225 88 0 chr9 84878408 84878488 -57392956 + L1MC5 LINE L1 7705 7791 -170 252 269 0 0 chr9 84878489 84878556 -57392888 + L1MC5 LINE L1 7825 7891 -70 2034 95 53 3 chr9 84878650 84878933 -57392511 - AluSq SINE Alu -16 297 1 2450 67 0 0 chr9 84879264 84879563 -57391881 - AluY SINE Alu -11 300 2 21 0 0 0 chr9 84879572 84879593 -57391851 + AT_rich Low_complexity Low_complexity 1 21 0 1644 32 0 0 chr9 84879593 84879783 -57391661 - L1PA5 LINE L1 -9 6145 5956 2865 186 62 7 chr9 84879786 84880530 -57390914 + L1M4 LINE L1 4348 5132 -1014 492 103 23 0 chr9 84880534 84880621 -57390823 + L1MA5 LINE L1 6210 6298 -2 771 210 16 111 chr9 84880672 84880915 -57390529 + AluJo SINE Alu 85 304 -8 200 33 0 33 chr9 84880941 84880971 -57390473 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 943 166 90 18 chr9 84880978 84881258 -57390186 + L1M4 LINE L1 5148 5442 -742 864 153 0 15 chr9 84881258 84881395 -57390049 + AluSq/x SINE Alu 1 135 -178 2086 102 0 0 chr9 84881395 84881670 -57389774 + AluSx SINE Alu 1 275 -37 207 0 0 0 chr9 84881674 84881697 -57389747 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 1251 163 14 53 chr9 84881698 84881981 -57389463 + L1M4 LINE L1 5430 5701 -483 1479 115 0 0 chr9 84882214 84882414 -57389030 + AluJb SINE Alu 1 200 -112 1952 108 45 3 chr9 84882551 84882838 -57388606 + AluJb SINE Alu 1 299 -13 25 51 0 0 chr9 84883861 84883900 -57387544 + GC_rich Low_complexity Low_complexity 1 39 0 1402 192 32 27 chr9 84884379 84884717 -57386727 - L1MB5 LINE L1 -8 6166 5827 2431 70 0 13 chr9 84884717 84885032 -57386412 - AluY SINE Alu 0 311 1 1090 107 0 0 chr9 84885033 84885182 -57386262 - AluSp SINE Alu -28 285 137 785 116 125 83 chr9 84885192 84885339 -57386105 - L1MB5 LINE L1 -355 5819 5659 2282 80 0 17 chr9 84885339 84885638 -57385806 - AluSx SINE Alu -18 294 1 785 116 125 83 chr9 84885638 84885706 -57385738 - L1MB5 LINE L1 -515 5659 5595 34 65 0 0 chr9 84885825 84885887 -57385557 + AT_rich Low_complexity Low_complexity 1 62 0 1729 190 3 7 chr9 84885891 84886186 -57385258 + AluJb SINE Alu 3 296 -16 2249 92 0 0 chr9 84887651 84887934 -57383510 + AluSg SINE Alu 9 291 -19 2442 88 3 0 chr9 84888258 84888566 -57382878 + AluSx SINE Alu 1 309 -3 1343 94 0 0 chr9 84888566 84888784 -57382660 + AluSc SINE Alu 118 309 0 653 195 6 75 chr9 84888784 84888852 -57382592 + MER112 DNA MER1_type 98 169 -91 951 123 0 0 chr9 84888852 84888982 -57382462 - FLAM_C SINE Alu -3 130 1 653 195 6 75 chr9 84888982 84888996 -57382448 + MER112 DNA MER1_type 169 182 -78 1924 155 7 3 chr9 84888996 84889293 -57382151 - AluJb SINE Alu -14 298 1 653 195 6 75 chr9 84889293 84889383 -57382061 + MER112 DNA MER1_type 182 259 -1 1675 244 95 28 chr9 84889456 84889514 -57381930 - MLT1E LTR MaLR -4 589 536 2304 92 7 0 chr9 84889514 84889809 -57381635 + AluSg SINE Alu 1 297 -13 1675 244 95 28 chr9 84889809 84890286 -57381158 - MLT1E LTR MaLR -57 536 18 346 282 149 16 chr9 84890290 84890538 -57380906 + L2 LINE L2 2469 2749 -565 2181 98 0 0 chr9 84890877 84891154 -57380290 - AluSg SINE Alu -29 281 5 1491 185 43 4 chr9 84891338 84891451 -57379993 + AluJo SINE Alu 6 113 -199 981 61 14 14 chr9 84891451 84891598 -57379846 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 1491 185 43 4 chr9 84891598 84891760 -57379684 + AluJo SINE Alu 113 292 -20 1516 166 3 86 chr9 84891868 84892047 -57379397 - AluJo SINE Alu -24 288 145 2113 117 40 0 chr9 84892047 84892346 -57379098 - AluSq SINE Alu -2 311 1 1516 166 3 86 chr9 84892346 84892480 -57378964 - AluJo SINE Alu -167 145 1 2374 60 0 4 chr9 84892503 84892811 -57378633 - AluY SINE Alu 0 307 1 354 200 0 4 chr9 84893091 84893174 -57378270 - L1MC5 LINE L1 -371 7671 7499 2694 149 25 39 chr9 84893184 84893263 -57378181 - L1MB2 LINE L1 -7 6164 6085 2132 102 11 3 chr9 84893263 84893547 -57377897 + AluSx SINE Alu 1 286 -26 294 29 0 0 chr9 84893547 84893582 -57377862 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2694 149 25 39 chr9 84893582 84894018 -57377426 - L1MB2 LINE L1 -84 6087 5655 912 162 26 0 chr9 84894027 84894181 -57377263 + MLT1A2 LTR MaLR 1 158 -216 1652 184 0 3 chr9 84894190 84894643 -57376801 + AluJo SINE Alu 1 452 0 715 221 109 50 chr9 84894647 84894945 -57376499 - L1MC5 LINE L1 -516 7498 7218 2288 110 0 10 chr9 84894945 84895253 -57376191 + AluSx SINE Alu 1 305 -7 715 221 109 50 chr9 84895253 84895532 -57375912 - L1MC5 LINE L1 -796 7218 6957 1761 156 62 0 chr9 84895715 84895991 -57375453 + AluJb SINE Alu 1 293 -19 2498 61 3 0 chr9 84895998 84896291 -57375153 - AluY SINE Alu -17 294 1 697 163 0 64 chr9 84896500 84896641 -57374803 - AluSg/x SINE Alu -1 311 180 526 143 0 0 chr9 84896637 84896721 -57374723 + AluSp/q SINE Alu 228 311 -2 * 261 266 55 18 chr9 84896776 84896885 -57374559 + MLT1K LTR MaLR 466 578 -10 285 231 0 77 chr9 84897029 84897107 -57374337 + Tigger3(Golem) DNA MER2_type 1 72 -2957 1312 206 28 43 chr9 84897120 84897166 -57374278 + MER92C LTR ERV1 233 278 -276 825 154 0 22 chr9 84897166 84897302 -57374142 - FLAM_C SINE Alu 0 133 1 1312 206 28 43 chr9 84897302 84897580 -57373864 + MER92C LTR ERV1 278 552 -2 406 156 78 44 chr9 84897884 84897974 -57373470 + MER90 LTR ERV1 1 93 -482 315 269 74 7 chr9 84897970 84898103 -57373341 + MLT1J LTR MaLR 71 212 -234 * 962 211 53 63 chr9 84898121 84898424 -57373020 + MER90 LTR ERV1 147 446 -168 425 175 0 52 chr9 84898891 84898988 -57372456 + L1MC5 LINE L1 7147 7238 -723 347 253 126 52 chr9 84899047 84899088 -57372356 + MLT1J LTR MaLR 2 39 -472 889 177 13 6 chr9 84899088 84899246 -57372198 - FRAM SINE Alu -6 160 2 347 253 126 52 chr9 84899246 84899378 -57372066 + MLT1J LTR MaLR 39 188 -323 627 183 0 63 chr9 84899417 84899559 -57371885 - FLAM_A SINE Alu 0 133 1 1574 166 60 3 chr9 84899689 84899973 -57371471 + AluJo SINE Alu 13 312 0 199 268 21 10 chr9 84899979 84900076 -57371368 + GA-rich Low_complexity Low_complexity 1 98 0 303 277 36 27 chr9 84900136 84900248 -57371196 - MLT1L LTR MaLR -7 608 496 604 289 31 18 chr9 84900328 84900556 -57370888 - MLT1L LTR MaLR -292 323 93 616 180 102 0 chr9 84900585 84900713 -57370731 + MER91B DNA MER1_type 14 154 -36 21 71 0 0 chr9 84900863 84900905 -57370539 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 84901217 84901238 -57370206 + AT_rich Low_complexity Low_complexity 1 21 0 1753 157 7 23 chr9 84901354 84901653 -57369791 - AluJo SINE Alu -18 294 1 2157 112 7 0 chr9 84901662 84901976 -57369468 - AluSq SINE Alu 0 316 1 376 306 45 9 chr9 84902528 84902639 -57368805 + L2 LINE L2 3158 3272 0 1563 140 3 143 chr9 84902727 84903070 -57368374 + AluJb SINE Alu 1 295 -17 585 265 42 0 chr9 84903227 84903393 -57368051 - Charlie8 DNA MER1_type -2240 177 5 649 231 137 19 chr9 84903634 84903846 -57367598 + MLT1F1 LTR MaLR 323 559 -8 604 229 28 0 chr9 84903852 84903996 -57367448 + MLT1C LTR MaLR 6 153 -314 1258 151 0 41 chr9 84904005 84904223 -57367221 + AluJo SINE Alu 102 310 -2 2238 108 24 0 chr9 84904235 84904531 -57366913 + AluSq SINE Alu 1 303 -10 1098 211 21 13 chr9 84904564 84904801 -57366643 + MLT1C LTR MaLR 226 464 -3 2233 106 26 0 chr9 84905664 84905966 -57365478 + AluSg SINE Alu 1 310 0 2429 69 3 0 chr9 84906345 84906636 -57364808 + AluY SINE Alu 1 292 -19 757 169 77 0 chr9 84906645 84906775 -57364669 + FLAM_C SINE Alu 2 141 -2 1955 145 10 0 chr9 84907726 84908023 -57363421 + AluJb SINE Alu 1 300 -12 2347 66 3 7 chr9 84908218 84908506 -57362938 - AluY SINE Alu -24 287 1 2154 119 7 7 chr9 84908629 84908932 -57362512 + AluSg SINE Alu 1 303 -7 666 215 16 0 chr9 84909209 84909330 -57362114 + AluJb SINE Alu 1 123 -189 1114 121 7 0 chr9 84909354 84909503 -57361941 - AluSq/x SINE Alu -163 150 1 989 157 26 0 chr9 84909524 84909677 -57361767 + AluJb SINE Alu 132 288 -24 21 36 0 0 chr9 84910055 84910083 -57361361 + AT_rich Low_complexity Low_complexity 1 28 0 9406 51 4 156 chr9 84910117 84911716 -57359728 + SVA Other Other 30 1385 -1 2387 95 3 9 chr9 84911966 84912281 -57359163 + AluSp SINE Alu 1 313 0 31 58 0 0 chr9 84912539 84912591 -57358853 + AT_rich Low_complexity Low_complexity 1 52 0 2362 101 0 0 chr9 84912646 84912952 -57358492 - AluSg SINE Alu -4 306 1 1816 159 6 22 chr9 84913188 84913503 -57357941 - AluJb SINE Alu 0 312 3 1932 119 58 14 chr9 84913590 84913884 -57357560 + AluSq SINE Alu 1 307 -6 2299 81 10 10 chr9 84913888 84914195 -57357249 + AluSx SINE Alu 6 312 0 224 347 20 10 chr9 84914370 84914468 -57356976 + MER5A DNA MER1_type 91 189 0 1831 159 23 0 chr9 84914587 84914888 -57356556 - AluJo SINE Alu -4 308 1 2080 106 24 14 chr9 84914984 84915118 -57356326 + AluSg1 SINE Alu 1 132 -177 2484 59 3 3 chr9 84915118 84915423 -57356021 + AluY SINE Alu 1 305 -6 2080 106 24 14 chr9 84915423 84915581 -57355863 + AluSg1 SINE Alu 132 296 -13 1881 115 4 0 chr9 84915591 84915835 -57355609 + AluSq SINE Alu 1 245 -68 233 121 0 0 chr9 84915909 84915942 -57355502 + MSTA LTR MaLR 396 428 0 1555 117 0 0 chr9 84915948 84916153 -57355291 - AluSq SINE Alu -9 304 100 452 118 15 0 chr9 84916254 84916322 -57355122 - AluS SINE Alu -237 74 6 806 127 0 0 chr9 84916329 84916447 -57354997 - AluSg/x SINE Alu -2 308 191 2123 118 3 7 chr9 84916586 84916875 -57354569 - AluSx SINE Alu -24 288 1 1461 108 0 15 chr9 84917078 84917281 -57354163 + AluSg/x SINE Alu 99 298 -12 2426 93 0 0 chr9 84917281 84917591 -57353853 + AluSg SINE Alu 1 310 0 2273 104 0 3 chr9 84917603 84917911 -57353533 + AluSp SINE Alu 7 313 0 183 114 0 0 chr9 84919821 84919856 -57351588 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 1889 117 0 4 chr9 84920491 84920748 -57350696 - AluSx SINE Alu -19 293 38 2359 93 0 0 chr9 84920754 84921045 -57350399 - AluSx SINE Alu -21 291 1 1542 179 0 11 chr9 84921372 84921651 -57349793 + AluJb SINE Alu 1 276 -36 1559 129 71 48 chr9 84921851 84922145 -57349299 + AluJb SINE Alu 1 301 -11 1477 75 158 30 chr9 84922502 84922767 -57348677 - AluY SINE Alu -1 300 2 1816 55 0 21 chr9 84922772 84923007 -57348437 - AluY SINE Alu -13 298 69 1750 158 50 0 chr9 84923055 84923333 -57348111 - AluJo SINE Alu -15 297 6 1789 151 0 15 chr9 84923601 84923873 -57347571 + AluJb SINE Alu 1 268 -44 202 246 130 43 chr9 84924101 84924239 -57347205 + L2 LINE L2 1939 2088 -1226 22 0 0 0 chr9 84924331 84924353 -57347091 + AT_rich Low_complexity Low_complexity 1 22 0 2339 96 0 19 chr9 84924434 84924746 -57346698 - AluSg SINE Alu -4 306 1 2025 143 0 10 chr9 84925259 84925573 -57345871 + AluJb SINE Alu 1 311 -1 25 0 0 0 chr9 84925833 84925858 -57345586 + AT_rich Low_complexity Low_complexity 1 25 0 2240 97 7 3 chr9 84925858 84926157 -57345287 + AluY SINE Alu 1 300 -11 631 160 61 0 chr9 84926157 84926288 -57345156 - L1MA8 LINE L1 -7 6284 6146 1615 122 18 107 chr9 84926442 84926534 -57344910 + AluSx SINE Alu 1 100 -212 2207 92 55 0 chr9 84926534 84926827 -57344617 + AluSq SINE Alu 2 310 -3 1615 122 18 107 chr9 84926827 84926897 -57344547 + AluSx SINE Alu 100 175 -137 2518 61 0 6 chr9 84926897 84927208 -57344236 + AluY SINE Alu 1 309 -2 1615 122 18 107 chr9 84927208 84927380 -57344064 + AluSx SINE Alu 175 306 -6 242 322 23 35 chr9 84927395 84927482 -57343962 - LTR67 LTR ERVL -338 219 134 719 244 124 5 chr9 84927815 84928024 -57343420 - LTR16A1 LTR ERVL 0 457 224 1167 95 0 0 chr9 84928211 84928358 -57343086 - AluSq SINE Alu -19 294 148 379 147 0 15 chr9 84928857 84928925 -57342519 + AluS SINE Alu 225 291 -9 1582 135 77 4 chr9 84928970 84929230 -57342214 - AluJb SINE Alu -28 284 6 599 196 0 0 chr9 84930318 84930444 -57341000 + AluSg/x SINE Alu 181 306 0 661 219 0 0 chr9 84933673 84933787 -57337657 - FLAM_A SINE Alu -19 114 1 23 0 0 0 chr9 84935667 84935690 -57335754 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 84936739 84936767 -57334677 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 84937017 84937041 -57334403 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr9 84941013 84941033 -57330411 + (A)n Simple_repeat Simple_repeat 1 20 0 192 326 0 23 chr9 84944059 84944145 -57327299 - L2 LINE L2 -42 3271 3188 2456 63 0 16 chr9 84945063 84945378 -57326066 + AluY SINE Alu 1 310 -1 279 302 151 25 chr9 84945803 84945962 -57325482 - MIR SINE MIR -4 258 80 317 268 96 54 chr9 84946501 84946750 -57324694 - L1ME4a LINE L1 -190 5931 5665 504 234 7 0 chr9 84946750 84946887 -57324557 - L1MA4 LINE L1 0 6300 6163 317 268 96 54 chr9 84946887 84946951 -57324493 - L1ME4a LINE L1 -456 5665 5605 2128 87 0 7 chr9 84946954 84947229 -57324215 - AluSp SINE Alu -16 297 25 2240 106 3 7 chr9 84947243 84947544 -57323900 - AluSp SINE Alu -13 300 1 2262 60 18 3 chr9 84948408 84948693 -57322751 + AluY SINE Alu 1 289 -22 25 0 0 0 chr9 84948734 84948759 -57322685 + AT_rich Low_complexity Low_complexity 1 25 0 182 333 107 23 chr9 84949144 84949321 -57322123 + MIR SINE MIR 19 210 -52 216 135 0 0 chr9 84949728 84949765 -57321679 + (TTCCC)n Simple_repeat Simple_repeat 1 37 0 1919 115 41 0 chr9 84949765 84950034 -57321410 - AluSx SINE Alu -32 280 1 2471 177 157 69 chr9 84950060 84950575 -57320869 - L1ME1 LINE L1 -1 6165 5697 1744 148 38 31 chr9 84950575 84950865 -57320579 - AluJb SINE Alu -20 292 1 2471 177 157 69 chr9 84950865 84950983 -57320461 - L1ME1 LINE L1 -469 5697 5591 1791 189 0 0 chr9 84950983 84951285 -57320159 - AluJo SINE Alu -10 302 1 2471 177 157 69 chr9 84951285 84951517 -57319927 - L1ME1 LINE L1 -575 5591 5339 1741 179 3 16 chr9 84951524 84951837 -57319607 - AluJb SINE Alu -1 311 3 5562 157 41 6 chr9 84951872 84952351 -57319093 + L1MA4 LINE L1 4996 5456 -844 183 42 0 0 chr9 84952351 84952375 -57319069 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5562 157 41 6 chr9 84952375 84952917 -57318527 + L1MA4 LINE L1 5456 6071 -229 2194 86 17 3 chr9 84952917 84953208 -57318236 + AluSg SINE Alu 1 295 -15 5562 157 41 6 chr9 84953208 84953441 -57318003 + L1MA4 LINE L1 6071 6294 -6 2280 110 3 0 chr9 84953478 84953787 -57317657 - AluSp SINE Alu -1 312 3 355 221 71 58 chr9 84953791 84953945 -57317499 - L1ME1 LINE L1 -838 5308 5153 819 195 18 41 chr9 84953983 84954152 -57317292 - AluJb SINE Alu -2 310 146 1342 239 92 82 chr9 84954374 84954388 -57317056 - L1MC4a LINE L1 -1675 6133 6121 1931 96 44 4 chr9 84954388 84954683 -57316761 + AluSx SINE Alu 1 306 0 1342 239 92 82 chr9 84954683 84955348 -57316096 - L1MC4a LINE L1 -1687 6121 5446 340 175 0 0 chr9 84955358 84955415 -57316029 + AluSq SINE Alu 131 187 -116 319 51 0 0 chr9 84955695 84955734 -57315710 + MER57B LTR ERV1 330 368 -66 333 0 0 0 chr9 84955734 84955771 -57315673 + (A)n Simple_repeat Simple_repeat 1 37 0 2232 120 3 0 chr9 84955974 84956282 -57315162 + AluSx SINE Alu 1 309 -3 550 232 36 7 chr9 84956659 84956797 -57314647 + MIR SINE MIR 35 176 -86 422 212 10 10 chr9 84957224 84957323 -57314121 + MLT1I LTR MaLR 308 406 -3 1490 165 0 8 chr9 84957463 84957700 -57313744 + AluJb SINE Alu 1 235 -77 564 176 8 34 chr9 84957700 84957812 -57313632 + AluJb SINE Alu 200 310 -2 242 237 17 0 chr9 84957893 84957952 -57313492 - Charlie2 DNA MER1_type 0 2862 2803 1040 50 0 0 chr9 84957978 84958098 -57313346 + AluSq/x SINE Alu 1 120 -193 1443 73 6 0 chr9 84958443 84958621 -57312823 - AluYa5 SINE Alu -132 179 1 482 282 52 39 chr9 84958636 84958907 -57312537 + L1ME4a LINE L1 5687 5914 -207 1702 189 59 19 chr9 84959032 84959403 -57312041 + L1ME1 LINE L1 5520 5905 -261 778 138 35 0 chr9 84959404 84959520 -57311924 - Tigger1 DNA MER2_type 0 2418 2299 2076 114 0 20 chr9 84959520 84959819 -57311625 + AluJb SINE Alu 1 293 -19 2167 83 41 3 chr9 84959950 84960240 -57311204 - AluY SINE Alu -9 302 2 1414 215 124 10 chr9 84960240 84960635 -57310809 + L1M4 LINE L1 3568 4007 -2139 2136 158 12 48 chr9 84960641 84961040 -57310404 + MLT1B LTR MaLR 6 390 0 487 242 0 10 chr9 84961041 84961140 -57310304 + L1M4 LINE L1 4004 4101 -2045 300 91 0 0 chr9 84961239 84961283 -57310161 + (CA)n Simple_repeat Simple_repeat 2 45 0 2304 103 3 7 chr9 84962681 84962991 -57308453 - AluSx SINE Alu -3 309 1 717 302 35 10 chr9 84963931 84964133 -57307311 + MIR SINE MIR 8 214 -48 205 300 0 20 chr9 84964400 84964450 -57306994 - L2 LINE L2 -5 3267 3219 4466 129 30 42 chr9 84964737 84964815 -57306629 + MER11C LTR ERVK 290 367 -704 2606 64 0 0 chr9 84964815 84965126 -57306318 + AluY SINE Alu 1 311 0 4466 129 30 42 chr9 84965126 84965838 -57305606 + MER11C LTR ERVK 367 1071 0 12938 101 13 27 chr9 84965838 84967843 -57303601 - L1P3 LINE L1 -4439 2022 8 8482 189 62 34 chr9 84967853 84969608 -57301836 - L1M2 LINE L1 -5045 1804 1 27 29 0 0 chr9 84969757 84969791 -57301653 + AT_rich Low_complexity Low_complexity 1 34 0 25 65 0 0 chr9 84969931 84969977 -57301467 + AT_rich Low_complexity Low_complexity 1 46 0 421 346 46 54 chr9 84970181 84970461 -57300983 + L2 LINE L2 2807 3084 -188 400 290 32 16 chr9 84970523 84970647 -57300797 - L1MC5 LINE L1 -37 7924 7799 24 0 0 0 chr9 84970683 84970707 -57300737 + AT_rich Low_complexity Low_complexity 1 24 0 353 352 28 0 chr9 84970717 84970859 -57300585 + L2 LINE L2 3168 3313 0 1045 294 164 25 chr9 84970870 84971424 -57300020 + L3 LINE CR1 386 1016 -561 1414 26 0 0 chr9 84971434 84971652 -57299792 + L1PA4 LINE L1 5997 6214 0 256 235 15 0 chr9 84971998 84972066 -57299378 + Charlie8 DNA MER1_type 1349 1417 -1000 2167 71 11 0 chr9 84972250 84972518 -57298926 - AluY SINE Alu -40 271 1 358 253 32 0 chr9 84972520 84972615 -57298829 - L1ME LINE L1 -456 5665 5568 447 206 257 0 chr9 84972634 84972770 -57298674 + MIR SINE MIR 75 245 -17 2221 98 0 14 chr9 84973297 84973594 -57297850 - AluY SINE Alu -18 293 1 1007 75 0 0 chr9 84974366 84974486 -57296958 - AluSq/x SINE Alu -192 120 1 660 287 6 0 chr9 84974486 84974667 -57296777 - L1MC5 LINE L1 -1161 6800 6619 810 203 0 0 chr9 84974724 84974924 -57296520 - AluJb SINE Alu 0 334 135 4567 113 6 3 chr9 84974924 84975588 -57295856 - L1MA2 LINE L1 -46 6258 5593 8760 135 47 26 chr9 84975609 84978218 -57293226 - L1MA1 LINE L1 -6 6296 3621 2285 105 0 0 chr9 84978218 84978513 -57292931 - AluSg SINE Alu -15 295 1 8760 135 47 26 chr9 84978513 84978649 -57292795 - L1MA1 LINE L1 -2681 3621 3489 * 24267 86 17 10 chr9 84978638 84979318 -57292126 - L1PA7 LINE L1 -2 6152 5478 2429 81 0 10 chr9 84979318 84979627 -57291817 - AluY SINE Alu -5 306 1 24267 86 17 10 chr9 84979627 84983224 -57288220 - L1PA7 LINE L1 -676 5478 1841 715 170 0 0 chr9 84983328 84983469 -57287975 + (CCCTG)n Simple_repeat Simple_repeat 4 144 0 1259 42 0 0 chr9 84983484 84983626 -57287818 - AluY SINE Alu -169 142 1 3055 137 17 8 chr9 84983626 84984145 -57287299 - L1MA2 LINE L1 -1130 5016 4493 900 136 0 0 chr9 84984146 84984278 -57287166 - AluSg/x SINE Alu -9 303 172 519 226 100 79 chr9 84984281 84984408 -57287036 - HAL1 LINE L1 -1186 1321 1198 1789 175 7 3 chr9 84984408 84984700 -57286744 - AluJb SINE Alu -19 293 1 519 226 100 79 chr9 84984700 84984912 -57286532 - HAL1 LINE L1 -1309 1198 975 2254 85 13 19 chr9 84984922 84985229 -57286215 - AluSx SINE Alu -7 305 1 1497 219 51 34 chr9 84985339 84985690 -57285754 - MSTD LTR MaLR 0 396 40 1675 129 85 34 chr9 84985714 84986009 -57285435 - AluSg SINE Alu 0 310 1 287 122 102 0 chr9 84986010 84986059 -57285385 - MSTD LTR MaLR -374 54 1 629 167 0 0 chr9 84986212 84986314 -57285130 - FRAM SINE Alu -40 136 35 1840 141 3 14 chr9 84986328 84986618 -57284826 - AluSx SINE Alu -7 305 19 232 242 38 102 chr9 84986664 84986821 -57284623 - HAL1 LINE L1 -2319 188 42 225 305 116 61 chr9 84986859 84987023 -57284421 - MIR SINE MIR -70 192 20 2337 92 0 0 chr9 84987432 84987727 -57283717 - AluY SINE Alu -16 295 1 283 370 28 0 chr9 84987981 84988089 -57283355 + MIR3 SINE MIR 93 203 -5 1012 186 4 85 chr9 84988205 84988299 -57283145 - L1MB7 LINE L1 -3 6181 6081 2302 91 3 0 chr9 84988299 84988595 -57282849 - AluSp SINE Alu -16 297 1 1012 186 4 85 chr9 84988595 84988758 -57282686 - L1MB7 LINE L1 -103 6081 5945 566 143 0 0 chr9 84988782 84988873 -57282571 - AluJ/FRAM SINE Alu -2 310 220 2514 157 30 68 chr9 84988873 84989316 -57282128 - L1MB7 LINE L1 -237 5941 5483 223 0 79 0 chr9 84989316 84989354 -57282090 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2044 140 0 0 chr9 84989354 84989639 -57281805 - AluSq SINE Alu -1 322 1 2514 157 30 68 chr9 84989639 84989722 -57281722 - L1MB7 LINE L1 -693 5485 5434 582 261 0 33 chr9 84989750 84989930 -57281514 - L1ME3 LINE L1 -88 6074 5901 707 151 0 7 chr9 84989931 84990061 -57281383 + L1M4 LINE L1 5680 5801 -320 7602 115 19 97 chr9 84990065 84990394 -57281050 + Tigger1 DNA MER2_type 860 1213 -1205 1566 157 53 4 chr9 84990394 84990656 -57280788 + AluJb SINE Alu 14 288 -24 7602 115 19 97 chr9 84990656 84991025 -57280419 + Tigger1 DNA MER2_type 1213 1609 -809 1140 124 0 0 chr9 84991025 84991203 -57280241 + (TTC)n Simple_repeat Simple_repeat 1 178 0 7602 115 19 97 chr9 84991203 84991221 -57280223 + Tigger1 DNA MER2_type 1609 1627 -791 2095 150 13 0 chr9 84991221 84991528 -57279916 - AluSx SINE Alu -1 311 1 7602 115 19 97 chr9 84991528 84992210 -57279234 + Tigger1 DNA MER2_type 1627 2134 -284 1768 165 0 32 chr9 84992210 84992526 -57278918 + AluJo SINE Alu 1 306 -6 7602 115 19 97 chr9 84992526 84992646 -57278798 + Tigger1 DNA MER2_type 2134 2262 -156 422 145 0 0 chr9 84992747 84992809 -57278635 - AluJ/FLAM SINE Alu -250 62 1 449 203 0 30 chr9 84992809 84992942 -57278502 - L1MB7 LINE L1 -1040 5106 4978 1607 238 9 2 chr9 84992945 84993377 -57278067 - L1MB7 LINE L1 -1262 4884 4450 2283 184 42 7 chr9 84993453 84993909 -57277535 + MER82 DNA MER2_type 176 647 -6 333 240 134 29 chr9 84993913 84994084 -57277360 - L1MB7 LINE L1 -1807 4339 4151 680 113 0 0 chr9 84994125 84994222 -57277222 + HY3 scRNA scRNA 3 99 -2 3729 171 41 38 chr9 84994235 84994973 -57276471 - L1MB1 LINE L1 -34 6134 5373 1796 136 29 15 chr9 84994973 84995266 -57276178 - AluJb SINE Alu 0 306 10 3729 171 41 38 chr9 84995266 84995787 -57275657 - L1MB1 LINE L1 -795 5373 4855 1262 191 5 0 chr9 84995799 84996009 -57275435 - AluJo SINE Alu -101 211 1 549 295 99 79 chr9 84996062 84996193 -57275251 - L1MEd LINE L1 -1072 1418 1291 2099 118 3 3 chr9 84996193 84996489 -57274955 - AluSg SINE Alu -14 296 1 549 295 99 79 chr9 84996489 84996616 -57274828 - L1MEd LINE L1 -1199 1291 1168 2339 93 0 10 chr9 84996616 84996918 -57274526 - AluSx SINE Alu -12 300 2 549 295 99 79 chr9 84996918 84997284 -57274160 - L1MEd LINE L1 -1322 1168 682 242 176 0 0 chr9 84997805 84997856 -57273588 - L1MC4a LINE L1 -1864 5944 5894 1111 123 114 14 chr9 84997858 84998077 -57273367 - MSTA LTR MaLR -3 425 185 2385 99 3 0 chr9 84998300 84998602 -57272842 - AluSp SINE Alu -10 303 1 767 108 272 13 chr9 84998797 84998955 -57272489 - MSTA LTR MaLR -229 199 1 1710 138 44 40 chr9 84998990 84999288 -57272156 - AluJo SINE Alu -13 299 1 2174 105 0 0 chr9 85000050 85000403 -57271041 + AluSx SINE Alu 1 353 0 337 291 135 20 chr9 85000405 85000459 -57270985 - MIR SINE MIR -11 251 205 342 256 145 39 chr9 85000459 85000693 -57270751 - MIR SINE MIR 0 262 4 337 291 135 20 chr9 85000693 85000786 -57270658 - MIR SINE MIR -57 205 87 1220 176 105 0 chr9 85001417 85001656 -57269788 + Tigger7 DNA MER2_type 1 264 -2223 433 244 0 0 chr9 85001658 85001748 -57269696 + Tigger7 DNA MER2_type 2391 2480 -7 539 319 67 9 chr9 85001754 85001964 -57269480 - MIR SINE MIR -5 257 36 22 0 0 0 chr9 85003489 85003511 -57267933 + AT_rich Low_complexity Low_complexity 1 22 0 1379 160 22 41 chr9 85004238 85004507 -57266937 - AluJo SINE Alu -13 299 36 251 154 0 0 chr9 85004694 85004733 -57266711 + 5S rRNA rRNA 1 39 -82 412 313 78 57 chr9 85005654 85005935 -57265509 + L2 LINE L2 2576 2862 -452 829 187 66 11 chr9 85006186 85006368 -57265076 - MER20 DNA MER1_type -27 192 1 2224 86 10 7 chr9 85006578 85006869 -57264575 + AluSc SINE Alu 1 292 -17 373 306 61 77 chr9 85006869 85007065 -57264379 + L1MEd LINE L1 625 817 -5555 1681 139 48 19 chr9 85007171 85007332 -57264112 + MER2 DNA MER2_type 1 156 -189 1556 170 15 11 chr9 85007332 85007597 -57263847 - AluJb SINE Alu -14 298 33 1681 139 48 19 chr9 85007597 85007744 -57263700 + MER2 DNA MER2_type 156 318 -27 1810 168 7 10 chr9 85007985 85008288 -57263156 - AluJb SINE Alu -10 302 1 213 39 0 0 chr9 85008302 85008328 -57263116 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2412 72 3 0 chr9 85008360 85008652 -57262792 + AluSp SINE Alu 1 293 -20 307 309 105 15 chr9 85008819 85009152 -57262292 + L1MEd LINE L1 1284 1646 -4738 1999 146 3 29 chr9 85009181 85009490 -57261954 + AluSx SINE Alu 1 301 -11 1611 197 23 33 chr9 85009657 85009961 -57261483 - AluJo SINE Alu -10 302 2 1928 157 0 10 chr9 85009986 85010285 -57261159 + AluSx SINE Alu 1 296 -16 337 287 139 4 chr9 85010518 85010950 -57260494 + L1MEd LINE L1 2263 2715 -3667 460 301 11 6 chr9 85011052 85011091 -57260353 + L1MEd LINE L1 2871 2908 -3474 2356 86 13 0 chr9 85011091 85011392 -57260052 - AluSq SINE Alu -8 305 1 460 301 11 6 chr9 85011392 85011535 -57259909 + L1MEd LINE L1 2908 3054 -3328 4610 104 8 3 chr9 85011562 85012232 -57259212 - HSMAR1 DNA Mariner -1 1286 614 482 133 0 0 chr9 85012232 85012307 -57259137 - HSMAR1 DNA Mariner -846 441 367 * 1434 80 31 0 chr9 85012306 85012531 -57258913 - HSMAR1 DNA Mariner -1049 238 7 407 267 119 0 chr9 85012536 85012787 -57258657 + L1MEd LINE L1 3092 3372 -3010 2101 172 42 24 chr9 85012799 85013524 -57257920 + L1MB7 LINE L1 4918 5658 -526 2273 68 58 0 chr9 85013524 85013816 -57257628 + AluY SINE Alu 1 309 -2 2101 172 42 24 chr9 85013816 85013886 -57257558 + L1MB7 LINE L1 5658 5725 -459 974 161 5 83 chr9 85013929 85014019 -57257425 + L1MB7 LINE L1 5927 6022 -156 2108 146 3 23 chr9 85014019 85014362 -57257082 - MER1B DNA MER1_type -1 336 1 974 161 5 83 chr9 85014362 85014549 -57256895 + L1MB7 LINE L1 6022 6177 -1 301 264 109 9 chr9 85014552 85014662 -57256782 + L1MEd LINE L1 3721 3841 -2541 24 32 0 0 chr9 85014903 85014934 -57256510 + AT_rich Low_complexity Low_complexity 1 31 0 1523 149 62 55 chr9 85014934 85015209 -57256235 - AluJo SINE Alu -23 289 13 757 171 0 0 chr9 85015216 85015339 -57256105 + FLAM_C SINE Alu 1 123 -20 405 111 0 0 chr9 85015359 85015422 -57256022 - LTR37A LTR ERV1 -273 153 91 389 254 53 0 chr9 85015473 85015587 -57255857 + MER21B LTR ERV1 98 217 -646 1043 218 71 47 chr9 85015609 85016017 -57255427 + MER21B LTR ERV1 321 783 -80 200 227 0 23 chr9 85016147 85016191 -57255253 - MIR SINE MIR -19 243 201 2086 93 22 0 chr9 85016556 85016861 -57254583 + AluSx SINE Alu 1 311 0 5011 150 44 24 chr9 85017331 85018209 -57253235 - L1MC3 LINE L1 -32 7753 6850 2101 128 3 26 chr9 85018209 85018522 -57252922 - AluSx SINE Alu -6 306 1 5011 150 44 24 chr9 85018522 85018663 -57252781 - L1MC3 LINE L1 -935 6850 6713 6218 75 19 0 chr9 85018923 85019916 -57251528 - L1PA14 LINE L1 -9 6152 5136 3590 163 33 39 chr9 85019916 85020738 -57250706 - L1PA14 LINE L1 -1242 4904 4088 13306 116 23 28 chr9 85020937 85021966 -57249478 - Tigger1 DNA MER2_type -211 2207 1174 2333 103 7 0 chr9 85021966 85022276 -57249168 - AluSq SINE Alu -1 312 1 13306 116 23 28 chr9 85022276 85023461 -57247983 - Tigger1 DNA MER2_type -1244 1174 5 1504 153 40 4 chr9 85023470 85023718 -57247726 + AluJb SINE Alu 53 309 -3 1237 137 58 19 chr9 85023813 85024040 -57247404 - AluSg/x SINE Alu 0 312 85 331 223 43 0 chr9 85024045 85024139 -57247305 - L1 LINE L1 -1326 4820 4723 280 240 32 32 chr9 85024145 85024270 -57247174 - L1 LINE L1 -1494 4652 4528 332 273 58 12 chr9 85024321 85024493 -57246951 + L1MC4a LINE L1 5866 6045 -1763 5464 134 31 18 chr9 85024548 85025667 -57245777 - L1MA4 LINE L1 -11 6289 5156 26 50 0 0 chr9 85026112 85026152 -57245292 + AT_rich Low_complexity Low_complexity 1 40 0 937 79 7 7 chr9 85026168 85026308 -57245136 - L1PA15 LINE L1 -2 6163 6024 977 239 45 0 chr9 85027134 85027377 -57244067 + MLT1B LTR MaLR 132 385 -5 195 159 0 72 chr9 85027380 85027449 -57243995 + CT-rich Low_complexity Low_complexity 5 68 0 214 310 63 84 chr9 85027635 85027777 -57243667 - MER5B DNA MER1_type -4 174 36 389 227 200 27 chr9 85028291 85028476 -57242968 + MIR SINE MIR 34 250 -12 27 62 0 0 chr9 85028928 85028976 -57242468 + AT_rich Low_complexity Low_complexity 1 48 0 2256 121 0 0 chr9 85029290 85029597 -57241847 - AluSx SINE Alu -5 307 1 768 232 58 35 chr9 85029631 85029934 -57241510 - L1ME3A LINE L1 -213 5949 5639 1662 102 10 92 chr9 85030400 85030626 -57240818 + MSTC LTR MaLR 150 346 -82 2198 125 7 0 chr9 85030626 85030930 -57240514 - AluSx SINE Alu -6 306 1 1662 102 10 92 chr9 85030930 85031007 -57240437 + MSTC LTR MaLR 346 428 0 429 20 0 0 chr9 85031922 85031972 -57239472 + (TG)n Simple_repeat Simple_repeat 2 51 0 413 297 143 39 chr9 85032351 85032533 -57238911 + MIR SINE MIR 2 202 -60 230 260 0 0 chr9 85032548 85032598 -57238846 - L2 LINE L2 -9 3263 3214 2162 41 0 15 chr9 85033878 85034148 -57237296 + AluY SINE Alu 1 266 -45 182 265 0 59 chr9 85034194 85034262 -57237182 + MIR SINE MIR 184 247 -15 728 259 116 0 chr9 85034988 85035204 -57236240 + MIR SINE MIR 1 241 -21 668 247 97 61 chr9 85035204 85035285 -57236159 - MLT1L LTR MaLR 0 615 538 2018 109 74 3 chr9 85035285 85035568 -57235876 - AluSx SINE Alu -9 303 1 668 247 97 61 chr9 85035568 85035913 -57235531 - MLT1L LTR MaLR -77 538 72 216 184 26 0 chr9 85036355 85036393 -57235051 - MER5A DNA MER1_type -1 188 150 1845 157 7 10 chr9 85036396 85036695 -57234749 + AluJb SINE Alu 1 298 -14 199 341 136 15 chr9 85037463 85037595 -57233849 - L2 LINE L2 -52 3220 3073 492 241 46 0 chr9 85037953 85038061 -57233383 + MER81 DNA DNA 2 114 0 2359 135 13 3 chr9 85038323 85038707 -57232737 + MLT1B LTR MaLR 3 390 0 2296 121 29 48 chr9 85038711 85039132 -57232312 - MSTC LTR MaLR -10 418 6 2034 107 4 4 chr9 85039135 85039441 -57232003 + AluSg SINE Alu 1 306 0 303 93 0 0 chr9 85039441 85039484 -57231960 + (TA)n Simple_repeat Simple_repeat 2 44 0 860 251 156 14 chr9 85039499 85039865 -57231579 - LTR16C LTR ERVL 0 491 74 24 0 0 0 chr9 85040527 85040551 -57230893 + AT_rich Low_complexity Low_complexity 1 24 0 1625 100 17 4 chr9 85040902 85041143 -57230301 + L1PB1 LINE L1 5905 6148 -3 186 377 113 25 chr9 85041967 85042206 -57229238 - L2 LINE L2 -112 3160 2901 1184 191 52 89 chr9 85042504 85042887 -57228557 - MLT1A2 LTR MaLR -5 369 1 575 301 58 0 chr9 85042899 85043072 -57228372 - MIR SINE MIR 0 262 80 1409 162 132 11 chr9 85043623 85043895 -57227549 + AluY SINE Alu 1 305 -6 2263 42 42 3 chr9 85044339 85044624 -57226820 - AluY SINE Alu -14 297 2 508 242 184 18 chr9 85045097 85045320 -57226124 - MIR SINE MIR -1 261 2 1812 122 0 8 chr9 85046160 85046414 -57225030 + AluSx SINE Alu 1 252 -60 490 96 0 0 chr9 85046516 85046589 -57224855 + MSTB LTR MaLR 354 426 0 773 159 7 41 chr9 85046590 85046735 -57224709 - Ricksha DNA DNA -2974 272 133 1766 189 7 0 chr9 85046835 85047137 -57224307 + AluJb SINE Alu 1 304 -8 180 0 0 0 chr9 85047261 85047281 -57224163 + (A)n Simple_repeat Simple_repeat 1 20 0 2305 105 0 0 chr9 85049295 85049591 -57221853 + AluSc SINE Alu 1 296 -13 293 247 31 52 chr9 85050311 85050408 -57221036 + MIR3 SINE MIR 97 191 -17 276 149 0 0 chr9 85050869 85050916 -57220528 + (TCC)n Simple_repeat Simple_repeat 3 49 0 195 162 0 0 chr9 85050911 85050948 -57220496 + T-rich Low_complexity Low_complexity 1 37 0 * 24 0 0 0 chr9 85052221 85052245 -57219199 + AT_rich Low_complexity Low_complexity 1 24 0 817 175 106 0 chr9 85052245 85052434 -57219010 - MER2 DNA MER2_type -135 210 2 1373 98 102 0 chr9 85052666 85052891 -57218553 + L1PA16 LINE L1 5910 6157 -9 24 0 0 0 chr9 85052891 85052915 -57218529 + AT_rich Low_complexity Low_complexity 1 24 0 180 231 0 0 chr9 85052969 85053021 -57218423 + (TA)n Simple_repeat Simple_repeat 2 53 0 669 311 52 9 chr9 85053908 85054120 -57217324 - MIR SINE MIR -15 247 27 2518 66 0 0 chr9 85054122 85054423 -57217021 - AluY SINE Alu -10 301 1 2573 111 8 16 chr9 85054527 85054905 -57216539 + THE1C LTR MaLR 1 375 0 2345 101 0 3 chr9 85054911 85055218 -57216226 - AluSq SINE Alu -7 306 1 240 256 51 102 chr9 85055400 85055537 -57215907 + MER5A DNA MER1_type 21 150 -39 209 388 25 0 chr9 85055566 85055646 -57215798 + MIR SINE MIR 25 106 -156 463 264 285 0 chr9 85055720 85055913 -57215531 - MIR SINE MIR -6 256 9 851 243 22 0 chr9 85056165 85056350 -57215094 + MER5A DNA MER1_type 1 189 0 316 364 54 39 chr9 85056472 85056752 -57214692 - L2 LINE L2 -20 3252 2969 2022 56 0 0 chr9 85058237 85058469 -57212975 + AluY SINE Alu 65 296 -15 234 274 0 0 chr9 85058501 85058552 -57212892 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 247 203 17 0 chr9 85058554 85058613 -57212831 + L1MC4 LINE L1 6652 6711 -1331 943 109 0 0 chr9 85059259 85059387 -57212057 + AluSg/x SINE Alu 174 301 -9 421 198 0 0 chr9 85059388 85059469 -57211975 - L1MB2 LINE L1 -38 6133 6053 462 100 57 0 chr9 85059471 85059541 -57211903 - MLT1H LTR MaLR -475 74 1 1301 162 40 0 chr9 85059757 85060051 -57211393 - L1MD3 LINE L1 0 7995 7471 241 143 0 0 chr9 85060068 85060110 -57211334 + MLT1C LTR MaLR 374 415 -52 21 36 0 0 chr9 85060146 85060174 -57211270 + AT_rich Low_complexity Low_complexity 1 28 0 486 96 0 0 chr9 85060745 85060818 -57210626 + (CCAA)n Simple_repeat Simple_repeat 2 74 0 32 0 0 0 chr9 85060841 85060873 -57210571 + AT_rich Low_complexity Low_complexity 1 32 0 14163 144 26 33 chr9 85061389 85065950 -57205494 - L1MA3 LINE L1 -2 7722 3190 336 221 61 99 chr9 85066060 85066241 -57205203 + L1ME4a LINE L1 5845 6018 -103 2232 106 0 3 chr9 85066588 85066880 -57204564 + AluSq SINE Alu 1 291 -22 219 146 0 0 chr9 85066880 85066921 -57204523 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr9 85067028 85067049 -57204395 + AT_rich Low_complexity Low_complexity 1 21 0 807 229 153 41 chr9 85067778 85068171 -57203273 - MLT1J1 LTR MaLR -9 437 1 2241 115 0 10 chr9 85068287 85068613 -57202831 + AluSx SINE Alu 1 323 0 390 323 61 48 chr9 85069489 85069718 -57201726 - MIR SINE MIR -3 259 28 226 222 74 0 chr9 85070347 85070428 -57201016 - MER117 DNA MER1_type -50 147 61 2319 82 17 7 chr9 85070866 85071160 -57200284 + AluY SINE Alu 1 297 -14 927 125 119 17 chr9 85071643 85071819 -57199625 + AluSg/x SINE Alu 102 295 -15 1258 86 0 0 chr9 85072256 85072419 -57199025 + AluY SINE Alu 149 311 0 6688 112 20 13 chr9 85073009 85074307 -57197137 - L1MA2 LINE L1 0 6304 4990 7701 172 26 6 chr9 85074342 85075778 -57195666 - L1M1 LINE L1 -6088 1477 14 203 250 0 0 chr9 85075845 85075885 -57195559 + (CAG)n Simple_repeat Simple_repeat 3 42 0 1793 239 49 41 chr9 85076294 85077133 -57194311 + L1MDb LINE L1 775 1582 -4824 521 96 0 0 chr9 85077135 85077208 -57194236 + AluS SINE Alu 1 73 -240 2977 186 75 2 chr9 85077315 85077879 -57193565 - MER77 LTR ERV1 0 605 1 3544 227 75 61 chr9 85077879 85078494 -57192950 + L1MDb LINE L1 2184 2789 -3617 1957 171 0 3 chr9 85078494 85078804 -57192640 + AluJb SINE Alu 1 309 -3 3544 227 75 61 chr9 85078804 85079564 -57191880 + L1MDb LINE L1 2789 3531 -2875 2169 136 113 13 chr9 85079564 85079953 -57191491 + MSTA LTR MaLR 1 428 0 3544 227 75 61 chr9 85079953 85080258 -57191186 + L1MDb LINE L1 3531 3830 -2576 2243 101 0 3 chr9 85080260 85080578 -57190866 + AluSq SINE Alu 1 317 0 294 313 26 0 chr9 85080647 85080762 -57190682 - MER5A DNA MER1_type -8 181 64 430 294 97 12 chr9 85080819 85081067 -57190377 + L1ME4a LINE L1 5640 5908 -213 284 250 103 22 chr9 85081081 85081217 -57190227 + L1ME4a LINE L1 5975 6121 0 23 78 0 0 chr9 85081792 85081843 -57189601 + AT_rich Low_complexity Low_complexity 1 51 0 8228 113 48 4 chr9 85081949 85083333 -57188111 - L1M1 LINE L1 -4375 3190 1746 1741 198 21 3 chr9 85083380 85083714 -57187730 + MER47B DNA MER2_type 66 405 -13 2531 82 0 0 chr9 85083973 85084277 -57187167 - AluSx SINE Alu -8 304 1 228 272 74 0 chr9 85084434 85084515 -57186929 + L2 LINE L2 3186 3272 0 2338 94 10 0 chr9 85085186 85085483 -57185961 - AluSq SINE Alu -13 300 1 1704 173 77 3 chr9 85085737 85086090 -57185354 - MLT1B LTR MaLR -11 379 1 904 304 4 12 chr9 85086159 85086416 -57185028 + MIR SINE MIR 5 259 -3 2020 151 20 26 chr9 85086442 85086833 -57184611 + MLT1B LTR MaLR 2 390 0 249 266 94 0 chr9 85087640 85087704 -57183740 + MER102b DNA MER1_type 2 71 -270 232 206 8 183 chr9 85087734 85087860 -57183584 + MER102b DNA MER1_type 234 337 -4 1330 157 83 10 chr9 85088160 85088460 -57182984 + MER33 DNA MER1_type 3 324 0 368 20 20 0 chr9 85088805 85088854 -57182590 + (CA)n Simple_repeat Simple_repeat 1 50 0 274 331 92 7 chr9 85089067 85089209 -57182235 + MIR SINE MIR 20 173 -89 408 179 13 0 chr9 85090094 85090172 -57181272 + MER67A LTR ERV1 1 79 -464 2943 194 22 36 chr9 85090173 85090843 -57180601 + MER67B LTR ERV1 1 661 0 2225 207 56 42 chr9 85090849 85091014 -57180430 + MLT1E LTR MaLR 13 174 -419 2730 143 21 37 chr9 85091014 85091447 -57179997 - MSTB LTR MaLR 0 426 1 2225 207 56 42 chr9 85091447 85091799 -57179645 + MLT1E LTR MaLR 174 537 -56 234 154 0 0 chr9 85091799 85091838 -57179606 + L1PA8 LINE L1 6040 6078 -94 897 107 8 0 chr9 85091838 85091960 -57179484 + L1PA10 LINE L1 6045 6167 -1 371 194 0 0 chr9 85091968 85092035 -57179409 + MLT1E LTR MaLR 588 654 0 2034 70 39 0 chr9 85092188 85092444 -57179000 + AluSc SINE Alu 28 293 -16 240 222 0 19 chr9 85092471 85092525 -57178919 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 859 192 31 82 chr9 85092645 85092937 -57178507 - L1ME2 LINE L1 -26 6138 5862 21 36 0 0 chr9 85092989 85093017 -57178427 + AT_rich Low_complexity Low_complexity 1 28 0 318 294 66 56 chr9 85093168 85093365 -57178079 + L1MC/D LINE L1 3725 3923 -2223 189 0 0 0 chr9 85093528 85093549 -57177895 + (GAAA)n Simple_repeat Simple_repeat 1 21 0 1616 282 83 55 chr9 85093554 85094065 -57177379 + HAL1 LINE L1 230 778 -1729 2518 53 3 0 chr9 85094065 85094364 -57177080 - AluY SINE Alu -11 300 1 1616 282 83 55 chr9 85094364 85094755 -57176689 + HAL1 LINE L1 778 1157 -1350 1866 118 82 0 chr9 85095448 85095728 -57175716 + AluSx SINE Alu 1 303 -9 398 273 124 55 chr9 85095958 85096395 -57175049 + L1MC/D LINE L1 5255 5740 -502 7503 30 0 1 chr9 85096400 85097271 -57174173 - L1PA4 LINE L1 0 6155 5286 241 312 71 0 chr9 85097272 85097413 -57174031 + L1MC/D LINE L1 5732 5882 -1926 2218 108 10 0 chr9 85097738 85098033 -57173411 + AluSx SINE Alu 1 298 -14 800 249 101 72 chr9 85098351 85098626 -57172818 - L1ME4a LINE L1 -6 6115 5850 2112 119 11 11 chr9 85098626 85098912 -57172532 - AluSx SINE Alu -26 286 1 800 249 101 72 chr9 85098912 85099179 -57172265 - L1ME4a LINE L1 -271 5850 5557 1332 188 147 48 chr9 85099226 85099647 -57171797 + MER110A LTR ERV1 1 463 -5 410 241 18 36 chr9 85099828 85099940 -57171504 - MER94 DNA DNA 0 134 25 3763 78 2 2 chr9 85099955 85100406 -57171038 + MLT2A2 LTR ERVL 3 453 0 267 225 23 101 chr9 85100521 85100572 -57170872 - MIR SINE MIR -12 250 197 2354 81 0 7 chr9 85100572 85100867 -57170577 - AluSc SINE Alu -16 293 1 267 225 23 101 chr9 85100867 85100944 -57170500 - MIR SINE MIR -65 197 132 255 280 75 28 chr9 85100930 85101037 -57170407 + MER5B DNA MER1_type 67 178 0 * 236 273 0 0 chr9 85101950 85102005 -57169439 + (CA)n Simple_repeat Simple_repeat 2 56 0 511 237 218 6 chr9 85102412 85102568 -57168876 - MER5A DNA MER1_type 0 189 1 451 259 190 6 chr9 85102836 85102994 -57168450 + MER5A DNA MER1_type 3 189 0 998 186 12 0 chr9 85103041 85103208 -57168236 + FAM SINE Alu 1 169 -6 2010 145 34 51 chr9 85103718 85104070 -57167374 + MER7A DNA MER2_type 3 346 0 453 259 25 10 chr9 85105193 85105353 -57166091 + L1MC/D LINE L1 5676 5833 -1952 818 256 42 53 chr9 85106638 85107071 -57164373 - L1MC5 LINE L1 -35 7926 7499 256 53 53 0 chr9 85107124 85107162 -57164282 - L1MB7 LINE L1 0 6184 6145 759 210 138 85 chr9 85107166 85107607 -57163837 + MLT1C LTR MaLR 5 466 -1 263 105 0 0 chr9 85107611 85107649 -57163795 - L1MB8 LINE L1 -34 6144 6107 834 164 0 0 chr9 85107650 85107784 -57163660 - AluSg/x SINE Alu -7 303 170 1795 146 33 3 chr9 85107784 85108086 -57163358 - L1MB8 LINE L1 -66 6112 5802 21 36 0 0 chr9 85108264 85108292 -57163152 + AT_rich Low_complexity Low_complexity 1 28 0 334 282 84 71 chr9 85108929 85109252 -57162192 + MLT1G3-int LTR MaLR 1044 1370 -1 430 214 29 39 chr9 85109300 85109403 -57162041 + MLT1G3 LTR MaLR 1 102 -428 2761 217 39 48 chr9 85109403 85109482 -57161962 + L1ME2 LINE L1 4642 4720 -1444 1909 154 0 17 chr9 85109482 85109781 -57161663 + AluJo SINE Alu 3 296 -16 2761 217 39 48 chr9 85109781 85110767 -57160677 + L1ME2 LINE L1 4720 5694 -470 2080 119 3 0 chr9 85110767 85111052 -57160392 + AluSq SINE Alu 15 300 -13 2761 217 39 48 chr9 85111052 85111398 -57160046 + L1ME2 LINE L1 5694 6042 -122 444 158 0 0 chr9 85111391 85111467 -57159977 + L1MA9 LINE L1 6237 6312 0 * 548 219 86 7 chr9 85111457 85111608 -57159836 + L1ME2 LINE L1 6002 6164 0 677 253 83 57 chr9 85111655 85111956 -57159488 + L2 LINE L2 3005 3313 0 184 407 12 0 chr9 85112076 85112157 -57159287 - L2 LINE L2 -4 3268 3187 351 250 103 22 chr9 85113090 85113226 -57158218 - L1ME4a LINE L1 0 6121 5975 608 271 105 16 chr9 85113240 85113487 -57157957 - L1ME4a LINE L1 -213 5908 5640 292 278 43 17 chr9 85113545 85113660 -57157784 + MER5A DNA MER1_type 64 181 -8 2242 88 3 3 chr9 85113729 85114046 -57157398 - AluSq SINE Alu 0 317 1 3962 119 27 2 chr9 85114142 85114730 -57156714 - L1MA4 LINE L1 -11 6289 5687 3039 206 45 21 chr9 85114730 85115362 -57156082 + L1PB4 LINE L1 5469 6119 -37 2378 106 0 0 chr9 85115362 85115673 -57155771 + AluSx SINE Alu 1 311 -1 3039 206 45 21 chr9 85115673 85115711 -57155733 + L1PB4 LINE L1 6119 6155 -1 383 78 16 0 chr9 85118111 85118175 -57153269 + (TA)n Simple_repeat Simple_repeat 2 66 0 1929 192 102 53 chr9 85119146 85119636 -57151808 + MER68 LTR ERV1 1 514 -48 228 204 23 0 chr9 85119683 85119727 -57151717 + MER77 LTR ERV1 561 605 0 1616 248 134 41 chr9 85120843 85121758 -57149686 + HAL1b LINE L1 73 902 -446 1870 158 0 7 chr9 85121758 85122042 -57149402 + AluSx SINE Alu 1 282 -30 248 0 0 30 chr9 85122045 85122078 -57149366 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1616 248 134 41 chr9 85122078 85122141 -57149303 + HAL1b LINE L1 903 1185 -163 228 35 0 0 chr9 85122148 85122177 -57149267 + (CA)n Simple_repeat Simple_repeat 2 30 0 1064 221 4 33 chr9 85123424 85123664 -57147780 + MER97c DNA MER1_type? 2 234 -856 912 197 75 46 chr9 85123868 85124173 -57147271 + MER97a DNA MER1_type? 581 894 0 183 80 0 0 chr9 85127218 85127243 -57144201 + (GAA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 85128083 85128104 -57143340 + AT_rich Low_complexity Low_complexity 1 21 0 306 73 0 0 chr9 85128104 85128145 -57143299 + (TG)n Simple_repeat Simple_repeat 2 42 0 914 191 69 0 chr9 85128420 85128593 -57142851 + MER5A DNA MER1_type 2 186 -3 393 299 49 14 chr9 85129216 85129360 -57142084 + MIR SINE MIR 64 212 -50 26 0 0 0 chr9 85129387 85129413 -57142031 + AT_rich Low_complexity Low_complexity 1 26 0 2222 113 0 3 chr9 85129413 85129706 -57141738 - AluSq SINE Alu -21 292 1 2056 134 7 0 chr9 85129708 85129998 -57141446 - AluSx SINE Alu -20 292 1 2452 124 41 10 chr9 85130104 85130491 -57140953 + MSTA LTR MaLR 30 428 0 2326 222 102 14 chr9 85130581 85131293 -57140151 + L1M4 LINE L1 3674 4448 -1698 747 108 0 0 chr9 85131415 85131526 -57139918 + (TTCCC)n Simple_repeat Simple_repeat 4 114 0 2237 94 3 0 chr9 85131526 85131683 -57139761 - AluSq SINE Alu -24 289 129 216 0 0 0 chr9 85131683 85131707 -57139737 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2237 94 3 0 chr9 85131707 85131837 -57139607 - AluSq SINE Alu -184 129 1 622 262 84 31 chr9 85131966 85132055 -57139389 - MIR SINE MIR -13 249 166 2437 179 33 16 chr9 85132055 85132480 -57138964 - MSTB1 LTR MaLR 0 432 1 622 262 84 31 chr9 85132480 85132615 -57138829 - MIR SINE MIR -96 166 13 2897 7 0 0 chr9 85132708 85133017 -57138427 - AluYa5 SINE Alu -2 309 1 2437 137 3 0 chr9 85133064 85133399 -57138045 + MER1B DNA MER1_type 2 337 0 363 329 15 7 chr9 85133447 85133584 -57137860 - MER5A DNA MER1_type -49 140 3 5697 112 53 1 chr9 85134384 85135238 -57136206 - Tigger3b DNA MER2_type -1 1230 333 749 183 0 0 chr9 85135251 85135371 -57136073 - Tigger3b DNA MER2_type -1111 120 1 331 204 7 21 chr9 85135476 85135621 -57135823 + L1ME3A LINE L1 5910 6096 -74 351 96 0 0 chr9 85136018 85136070 -57135374 + (TG)n Simple_repeat Simple_repeat 2 53 0 244 308 65 9 chr9 85136779 85136886 -57134558 - MER5A DNA MER1_type -18 171 59 574 340 13 6 chr9 85137400 85137556 -57133888 - L2 LINE L2 0 3272 3116 2495 57 0 3 chr9 85137985 85138286 -57133158 - AluSc SINE Alu -9 300 1 213 241 0 0 chr9 85139052 85139106 -57132338 + GA-rich Low_complexity Low_complexity 3 56 0 1333 202 114 10 chr9 85139675 85140083 -57131361 - MLT1J LTR MaLR -6 505 8 210 294 46 55 chr9 85140637 85140746 -57130698 - MIR3 SINE MIR -92 116 9 203 345 0 0 chr9 85141274 85141332 -57130112 - MIR SINE MIR -199 63 6 2032 141 103 0 chr9 85142070 85142418 -57129026 - MLT1B LTR MaLR -5 385 2 3125 196 3 16 chr9 85142491 85142970 -57128474 + MER68 LTR ERV1 3 475 -87 1937 143 52 25 chr9 85142970 85143333 -57128111 + THE1C LTR MaLR 1 373 -2 3125 196 3 16 chr9 85143333 85143420 -57128024 + MER68 LTR ERV1 475 562 0 7405 44 6 1 chr9 85143421 85144314 -57127130 - L1PA7 LINE L1 -3 6151 5255 1974 100 74 0 chr9 85145321 85145590 -57125854 - AluSx SINE Alu 0 312 24 295 277 76 7 chr9 85145716 85145851 -57125593 - MIR SINE MIR -64 198 55 189 152 0 0 chr9 85145908 85145941 -57125503 - L2 LINE L2 -219 3053 3021 505 236 82 2 chr9 85146749 85147132 -57124312 - LTR16C LTR ERVL -2 489 6 252 0 0 0 chr9 85147176 85147204 -57124240 + (TG)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr9 85147203 85147228 -57124216 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 2120 109 3 10 chr9 85147834 85148136 -57123308 - AluSx SINE Alu -12 300 1 3780 40 0 4 chr9 85148280 85148730 -57122714 + L1PA6 LINE L1 5707 6154 0 2183 116 3 3 chr9 85148745 85149039 -57122405 + AluSg SINE Alu 2 295 -15 223 378 94 0 chr9 85149318 85149445 -57121999 + MER91C DNA MER1_type 1 139 -1 914 216 50 0 chr9 85149796 85149995 -57121449 + MER3 DNA MER1_type 1 209 0 2885 124 9 18 chr9 85151231 85151674 -57119770 + L1PA16 LINE L1 5719 6157 -9 10776 153 42 75 chr9 85151848 85152818 -57118626 + Tigger1 DNA MER2_type 24 1025 -1393 1963 160 87 20 chr9 85152818 85153219 -57118225 - MSTA LTR MaLR 0 428 1 10776 153 42 75 chr9 85153219 85153456 -57117988 + Tigger1 DNA MER2_type 1025 1269 -1149 2577 70 0 3 chr9 85153456 85153768 -57117676 + AluY SINE Alu 1 311 0 10776 153 42 75 chr9 85153768 85154187 -57117257 + Tigger1 DNA MER2_type 1269 1701 -717 1851 162 50 0 chr9 85154187 85154307 -57117137 + AluJo SINE Alu 1 113 -199 396 0 0 0 chr9 85154307 85154351 -57117093 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1851 162 50 0 chr9 85154351 85154527 -57116917 + AluJo SINE Alu 113 312 0 10776 153 42 75 chr9 85154527 85155253 -57116191 + Tigger1 DNA MER2_type 1701 2292 -126 1913 143 17 40 chr9 85155253 85155604 -57115840 + MER61A LTR ERV1 1 343 0 10776 153 42 75 chr9 85155604 85155727 -57115717 + Tigger1 DNA MER2_type 2292 2418 0 2469 219 16 34 chr9 85157201 85157826 -57113618 - L1ME2 LINE L1 -1 6163 5550 740 103 9 0 chr9 85158012 85158128 -57113316 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 3359 201 53 30 chr9 85159010 85159175 -57112269 + L1PA15 LINE L1 5285 5445 -720 6064 134 152 17 chr9 85159175 85160298 -57111146 - MER52C LTR ERV1 -1 1277 3 3359 201 53 30 chr9 85160298 85160980 -57110464 + L1PA15 LINE L1 5445 6152 -13 968 161 11 6 chr9 85160986 85161160 -57110284 + L1MC2 LINE L1 5680 5854 -490 649 186 17 23 chr9 85161161 85161320 -57110124 + MLT2B2 LTR ERVL 222 432 -83 1874 170 37 7 chr9 85161808 85162146 -57109298 - MLT1A1 LTR MaLR 0 365 18 810 193 6 12 chr9 85162187 85162353 -57109091 + L1M4 LINE L1 5045 5209 -937 180 259 111 0 chr9 85162820 85162874 -57108570 + L2 LINE L2 2583 2642 -672 * 434 345 35 10 chr9 85162871 85163074 -57108370 + MIR SINE MIR 47 254 -8 2798 126 31 2 chr9 85163636 85164050 -57107394 - MSTA LTR MaLR 0 428 3 4548 143 49 16 chr9 85164052 85164686 -57106758 - MSTA-int LTR MaLR 0 1651 988 2481 57 0 13 chr9 85164686 85164987 -57106457 - AluY SINE Alu -14 297 1 4548 143 49 16 chr9 85164987 85165087 -57106357 - MSTA-int LTR MaLR -663 988 893 3012 194 34 80 chr9 85165086 85165489 -57105955 + L1MC1 LINE L1 2861 3281 -2865 * 626 192 8 48 chr9 85165489 85165614 -57105830 + FLAM_A SINE Alu 1 120 -13 3012 194 34 80 chr9 85165614 85166145 -57105299 + L1MC1 LINE L1 3281 3752 -2394 1011 123 0 0 chr9 85166145 85166300 -57105144 + MER2 DNA MER2_type 56 210 -135 30 59 0 0 chr9 85166300 85166351 -57105093 + AT_rich Low_complexity Low_complexity 1 51 0 6591 179 34 16 chr9 85166443 85167128 -57104316 + L1MC1 LINE L1 4404 5075 -1258 2297 113 13 3 chr9 85167128 85167438 -57104006 + AluSq SINE Alu 1 313 0 6591 179 34 16 chr9 85167438 85168141 -57103303 + L1MC1 LINE L1 5075 5842 -491 2377 71 20 7 chr9 85168141 85168438 -57103006 + AluSg1 SINE Alu 1 301 -8 6591 179 34 16 chr9 85168438 85168939 -57102505 + L1MC1 LINE L1 5842 6333 0 352 19 19 37 chr9 85169590 85169644 -57101800 + (GAGAA)n Simple_repeat Simple_repeat 5 57 0 2055 187 12 8 chr9 85169845 85170246 -57101198 + L1MA4 LINE L1 5893 6295 -5 756 193 13 7 chr9 85170491 85170641 -57100803 - LTR32 LTR ERVL -4 467 317 237 208 62 0 chr9 85170642 85170690 -57100754 - LTR32 LTR ERVL -104 367 317 1037 202 6 0 chr9 85170697 85170880 -57100564 - LTR32 LTR ERVL -119 352 169 347 268 85 30 chr9 85171049 85171213 -57100231 - L1M LINE L1 -2381 5427 5255 2451 80 0 0 chr9 85171443 85171744 -57099700 - AluY SINE Alu -10 301 1 1487 216 51 34 chr9 85171854 85172205 -57099239 - MSTD LTR MaLR 0 396 40 1675 125 84 40 chr9 85172227 85172524 -57098920 - AluSg SINE Alu 0 310 1 284 122 102 0 chr9 85172525 85172574 -57098870 - MSTD LTR MaLR -374 54 1 591 167 0 0 chr9 85172726 85172828 -57098616 - FRAM SINE Alu -40 136 35 1824 140 3 14 chr9 85172842 85173128 -57098316 - AluSx SINE Alu -7 305 23 225 312 71 0 chr9 85173506 85173647 -57097797 - L1MC/D LINE L1 -1926 5882 5732 6777 67 0 10 chr9 85173648 85174524 -57096920 + L1PA7 LINE L1 5286 6152 -2 8128 160 58 35 chr9 85174524 85174649 -57096795 + L1M1 LINE L1 3500 3621 -2681 2026 120 24 10 chr9 85174649 85174940 -57096504 + AluSg SINE Alu 1 295 -15 8128 160 58 35 chr9 85174940 85176972 -57094472 + L1M1 LINE L1 3621 5712 -590 236 154 26 0 chr9 85177721 85177760 -57093684 - LTR16C LTR ERVL -2 489 450 2120 109 3 10 chr9 85177962 85178264 -57093180 + AluSx SINE Alu 1 300 -12 387 0 0 0 chr9 85178870 85178913 -57092531 + (TC)n Simple_repeat Simple_repeat 1 43 0 288 0 0 0 chr9 85178912 85178944 -57092500 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 297 307 59 7 chr9 85178988 85179141 -57092303 + LTR16C LTR ERVL 6 166 -325 1063 165 11 119 chr9 85179530 85179827 -57091617 + MLT1D-int LTR MaLR 1116 1370 -1 2352 203 14 39 chr9 85179829 85180346 -57091098 + MLT1D LTR MaLR 2 505 0 714 205 192 8 chr9 85180494 85180712 -57090732 + MLT1G1 LTR MaLR 302 595 0 594 241 53 24 chr9 85180720 85180890 -57090554 - MIR SINE MIR -71 191 17 2295 106 3 0 chr9 85180956 85181258 -57090186 - AluSg SINE Alu -7 303 1 1598 145 13 82 chr9 85181846 85182163 -57089281 - AluJb SINE Alu -16 296 2 451 25 0 100 chr9 85183357 85183437 -57088007 - AluY SINE Alu 0 310 239 1684 70 0 0 chr9 85183437 85183636 -57087808 - AluY SINE Alu -112 199 1 2340 111 0 0 chr9 85183767 85184073 -57087371 + AluSx SINE Alu 1 306 -6 2016 108 58 4 chr9 85184604 85184882 -57086562 - AluSc SINE Alu -16 293 1 524 224 30 8 chr9 85184985 85185119 -57086325 + MIR SINE MIR 1 137 -125 283 186 8 169 chr9 85185154 85185272 -57086172 - MER94 DNA DNA -2 132 34 255 137 53 15 chr9 85185782 85185913 -57085531 + (TA)n Simple_repeat Simple_repeat 1 136 0 684 93 112 0 chr9 85185921 85186028 -57085416 - MSTB LTR MaLR -307 119 1 * 809 232 70 43 chr9 85186028 85186357 -57085087 - MLT1H1 LTR MaLR -211 379 33 1192 118 0 0 chr9 85186459 85186637 -57084807 + L1MA6 LINE L1 6122 6299 -1 510 232 209 9 chr9 85188273 85188493 -57082951 - HAL1 LINE L1 -1580 927 664 630 169 161 0 chr9 85188520 85188650 -57082794 + MER3 DNA MER1_type 1 151 -58 1294 262 168 6 chr9 85188712 85189189 -57082255 - HAL1 LINE L1 -1949 558 5 281 230 23 46 chr9 85189377 85189464 -57081980 - MIR SINE MIR -72 190 106 810 221 23 32 chr9 85189579 85189796 -57081648 - MIR SINE MIR 0 262 48 494 269 138 49 chr9 85191150 85191541 -57079903 - MER113 DNA MER1_type? -66 455 30 2068 146 0 3 chr9 85191869 85192171 -57079273 - AluSx SINE Alu -6 306 6 484 293 12 43 chr9 85192854 85192883 -57078561 + LTR16C LTR ERVL 157 185 -306 2264 116 3 0 chr9 85192883 85193194 -57078250 + AluSx SINE Alu 1 312 0 484 293 12 43 chr9 85193194 85193328 -57078116 + LTR16C LTR ERVL 185 315 -176 246 211 14 84 chr9 85193319 85193346 -57078098 + LTR16C LTR ERVL 426 453 -38 * 1702 152 126 87 chr9 85193346 85193727 -57077717 + MSTD LTR MaLR 1 396 0 246 211 14 84 chr9 85193727 85193770 -57077674 + LTR16C LTR ERVL 453 491 0 1296 183 0 0 chr9 85193879 85194081 -57077363 + AluJo SINE Alu 25 226 -86 2156 205 47 7 chr9 85194682 85195125 -57076319 - LTR40b LTR ERVL -1 461 1 791 257 69 14 chr9 85195158 85195376 -57076068 + MIR SINE MIR 2 231 -31 2101 68 0 0 chr9 85196330 85196578 -57074866 + AluSq SINE Alu 1 248 -65 3874 144 15 11 chr9 85196579 85196664 -57074780 - LTR39 LTR ERV1 -172 611 528 2967 128 14 2 chr9 85196664 85197093 -57074351 + MER57B LTR ERV1 1 434 0 3874 144 15 11 chr9 85197093 85197616 -57073828 - LTR39 LTR ERV1 -255 528 1 1177 235 124 50 chr9 85197777 85198016 -57073428 - L2 LINE L2 -703 2611 2391 2346 110 0 0 chr9 85198016 85198325 -57073119 + AluSc SINE Alu 1 309 0 1177 235 124 50 chr9 85198325 85198583 -57072861 - L2 LINE L2 -923 2391 2077 540 242 92 0 chr9 85198737 85198890 -57072554 - MER112 DNA MER1_type -6 254 88 255 79 0 0 chr9 85198890 85198928 -57072516 + (TG)n Simple_repeat Simple_repeat 2 39 0 1516 135 0 0 chr9 85199271 85199493 -57071951 - AluSg/x SINE Alu -7 303 82 637 203 146 51 chr9 85199500 85199755 -57071689 - L1MC5 LINE L1 -36 7925 7637 2219 117 0 10 chr9 85199755 85200054 -57071390 + AluSx SINE Alu 1 296 -16 637 203 146 51 chr9 85200054 85200093 -57071351 - L1MC5 LINE L1 -324 7637 7603 2187 95 34 3 chr9 85200241 85200536 -57070908 - AluSx SINE Alu -8 304 1 563 256 27 32 chr9 85200633 85200852 -57070592 + L1MC5 LINE L1 7719 7936 -25 4835 154 18 20 chr9 85201239 85202023 -57069421 - LTR39 LTR ERV1 -1 782 1 355 267 270 13 chr9 85202063 85202370 -57069074 - L1ME4a LINE L1 -4 6117 5732 229 234 0 0 chr9 85202768 85202818 -57068626 - L1ME4a LINE L1 -638 5659 5609 1058 276 111 85 chr9 85203001 85203639 -57067805 - MLT2F LTR ERVL -8 655 1 24 0 0 0 chr9 85204187 85204211 -57067233 + AT_rich Low_complexity Low_complexity 1 24 0 1900 127 4 0 chr9 85204213 85204473 -57066971 + AluSx SINE Alu 1 261 -51 285 293 69 0 chr9 85205115 85205231 -57066213 + LTR67 LTR ERVL 432 555 -2 195 129 0 0 chr9 85205270 85205301 -57066143 + (T)n Simple_repeat Simple_repeat 1 31 0 1043 183 87 16 chr9 85205738 85205990 -57065454 - MER69 DNA AcHobo -2 2524 2255 3571 227 70 97 chr9 85206093 85206374 -57065070 - MER69 DNA AcHobo -1135 1391 1104 2181 122 0 28 chr9 85206374 85206695 -57064749 - AluSx SINE Alu 0 312 1 3571 227 70 97 chr9 85206695 85207843 -57063601 - MER69 DNA AcHobo -1422 1104 1 1915 218 108 2 chr9 85208074 85208491 -57062953 - LTR40b LTR ERVL -1 461 1 533 295 34 7 chr9 85208844 85208993 -57062451 + MIR3 SINE MIR 49 201 -7 895 246 110 20 chr9 85209146 85209622 -57061822 - MLT1G1 LTR MaLR 0 595 64 1161 156 66 5 chr9 85209626 85209838 -57061606 + L1MC2 LINE L1 5934 6158 -186 27 0 0 0 chr9 85209839 85209866 -57061578 + AT_rich Low_complexity Low_complexity 1 27 0 1560 146 0 88 chr9 85209874 85210133 -57061311 - L1PA16 LINE L1 -20 6146 5917 1954 116 0 0 chr9 85210133 85210392 -57061052 + AluSc SINE Alu 44 302 -7 1560 146 0 88 chr9 85210392 85210440 -57061004 - L1PA16 LINE L1 -249 5917 5866 356 147 88 0 chr9 85210435 85210503 -57060941 + L1MC2 LINE L1 6157 6230 -114 * 389 258 13 50 chr9 85210570 85210729 -57060715 - MER74B LTR ERVL -74 548 396 1407 298 140 10 chr9 85211003 85211631 -57059813 - MER50 LTR ERV1 -24 710 1 310 170 54 80 chr9 85211749 85211861 -57059583 - MER69 DNA AcHobo -43 2483 2375 238 235 29 29 chr9 85211910 85211978 -57059466 - MER69 DNA AcHobo -2458 68 1 323 268 82 0 chr9 85212534 85212631 -57058813 + L2 LINE L2 3168 3272 0 1824 108 4 8 chr9 85212685 85212936 -57058508 + AluSq SINE Alu 1 250 -63 23 78 0 0 chr9 85215472 85215523 -57055921 + AT_rich Low_complexity Low_complexity 1 51 0 471 241 49 85 chr9 85215534 85215841 -57055603 - HAL1 LINE L1 -77 2430 2135 372 291 143 20 chr9 85215937 85216140 -57055304 - HAL1 LINE L1 -562 1945 1718 807 240 17 6 chr9 85216140 85216319 -57055125 + MIR SINE MIR 65 245 -17 1076 275 149 16 chr9 85216326 85216889 -57054555 - HAL1 LINE L1 -782 1725 1088 1024 256 113 37 chr9 85217543 85217925 -57053519 - MLT2B1 LTR ERVL -7 513 103 857 144 8 8 chr9 85217926 85218058 -57053386 + FLAM_C SINE Alu 1 132 -11 496 228 18 0 chr9 85218069 85218183 -57053261 - MLT2B1 LTR ERVL -404 116 1 261 250 0 0 chr9 85218636 85218712 -57052732 + (CA)n Simple_repeat Simple_repeat 1 76 0 348 47 0 0 chr9 85218762 85218805 -57052639 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 11265 50 5 0 chr9 85219016 85221109 -57050335 + L1PA6 LINE L1 4033 6144 -10 186 71 0 0 chr9 85221109 85221137 -57050307 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 28 71 0 0 chr9 85221335 85221391 -57050053 + AT_rich Low_complexity Low_complexity 1 56 0 2276 113 0 7 chr9 85221449 85221759 -57049685 + AluSx SINE Alu 1 308 -4 316 205 60 12 chr9 85221981 85222064 -57049380 + MER94 DNA DNA 5 91 -43 1306 173 88 26 chr9 85222214 85222344 -57049100 - MER33 DNA MER1_type -2262 323 203 2280 181 41 58 chr9 85222344 85222858 -57048586 + MLT1D LTR MaLR 1 505 0 1306 173 88 26 chr9 85222858 85223045 -57048399 - MER33 DNA MER1_type -2382 203 1 257 270 0 0 chr9 85223129 85223192 -57048252 + (TG)n Simple_repeat Simple_repeat 1 63 0 1310 221 50 0 chr9 85224556 85224855 -57046589 + MER2 DNA MER2_type 10 323 -22 260 328 67 78 chr9 85225475 85225926 -57045518 + L2 LINE L2 2827 3272 0 355 313 17 17 chr9 85226021 85226136 -57045308 + MER5A DNA MER1_type 51 165 -24 225 0 0 0 chr9 85226500 85226525 -57044919 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1716 161 17 27 chr9 85226529 85226827 -57044617 - AluJo SINE Alu -17 295 1 23 0 0 0 chr9 85226837 85226860 -57044584 + AT_rich Low_complexity Low_complexity 1 23 0 259 232 72 0 chr9 85228851 85228920 -57042524 + L1MC5 LINE L1 7316 7389 -572 614 225 0 0 chr9 85228927 85229038 -57042406 + AluSc SINE Alu 136 246 -63 385 251 151 28 chr9 85229165 85229416 -57042028 + L1MC4 LINE L1 7468 7749 -293 209 222 0 0 chr9 85229452 85229497 -57041947 + (TA)n Simple_repeat Simple_repeat 1 45 0 262 286 21 62 chr9 85229498 85229632 -57041812 + L1ME4a LINE L1 5935 6060 -61 1901 151 46 0 chr9 85229632 85229916 -57041528 - AluJb SINE Alu -13 299 3 262 286 21 62 chr9 85229916 85229973 -57041471 + L1ME4a LINE L1 6060 6118 -3 23 33 0 0 chr9 85229976 85230006 -57041438 + AT_rich Low_complexity Low_complexity 1 30 0 2446 69 13 3 chr9 85231254 85231560 -57039884 - AluSq SINE Alu -4 309 1 266 218 0 0 chr9 85231606 85231661 -57039783 - MER116 DNA Mariner -25 55 1 764 264 96 30 chr9 85231864 85232227 -57039217 + MARNA DNA Mariner 189 575 -11 371 369 12 0 chr9 85232571 85232731 -57038713 + MIR3 SINE MIR 42 203 -5 2051 151 0 0 chr9 85232925 85233223 -57038221 - AluJb SINE Alu -14 298 1 460 311 128 0 chr9 85234058 85234238 -57037206 - MIR SINE MIR -51 211 9 2259 120 0 0 chr9 85235548 85235856 -57035588 - AluSx SINE Alu -4 308 1 1726 266 64 17 chr9 85236587 85237069 -57034375 - MLT1J LTR MaLR -6 505 1 2406 86 3 0 chr9 85237567 85237871 -57033573 - AluSp SINE Alu -8 305 1 267 288 92 59 chr9 85238064 85238217 -57033227 - MER5A DNA MER1_type -24 165 8 295 281 98 24 chr9 85239322 85239486 -57031958 - MIR SINE MIR -11 251 76 231 248 143 9 chr9 85239761 85239806 -57031638 - MIR SINE MIR -13 249 211 2517 70 0 0 chr9 85239806 85240107 -57031337 - AluSp SINE Alu -12 301 1 231 248 143 9 chr9 85240107 85240166 -57031278 - MIR SINE MIR -51 211 131 1853 132 101 19 chr9 85240266 85240584 -57030860 + MER2 DNA MER2_type 1 344 0 902 257 96 96 chr9 85240642 85240848 -57030596 + L1MC4a LINE L1 4942 5147 -999 1632 159 30 20 chr9 85240848 85241143 -57030301 - AluJb SINE Alu -14 298 1 902 257 96 96 chr9 85241143 85241723 -57029721 + L1MC4a LINE L1 5147 5726 -420 2370 31 38 7 chr9 85241723 85242012 -57029432 - AluY SINE Alu -13 298 1 902 257 96 96 chr9 85242012 85242167 -57029277 + L1MC4a LINE L1 5726 5361 -785 246 32 0 0 chr9 85242167 85242198 -57029246 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 902 257 96 96 chr9 85242198 85242242 -57029202 + L1MC4a LINE L1 5360 5403 -743 247 173 19 19 chr9 85242960 85243012 -57028432 + LTR40b LTR ERVL 1 52 -410 558 244 121 52 chr9 85243027 85243449 -57027995 + L1ME4a LINE L1 5660 6110 -11 1305 205 132 18 chr9 85244947 85245333 -57026111 + L1ME2 LINE L1 5725 6154 -10 808 240 68 0 chr9 85245351 85245572 -57025872 - MIR SINE MIR -14 248 13 308 239 75 0 chr9 85246167 85246234 -57025210 - L2 LINE L2 0 3313 3242 233 111 0 67 chr9 85248299 85248344 -57023100 + MER3 DNA MER1_type 33 74 -135 741 177 165 27 chr9 85248543 85248846 -57022598 + MER3 DNA MER1_type 2234 2618 0 300 223 188 9 chr9 85249048 85249160 -57022284 + HAL1b LINE L1 216 347 -1001 1297 255 95 12 chr9 85249227 85249647 -57021797 - HsTC2a DNA Tc2 -159 585 131 772 288 102 4 chr9 85249801 85250075 -57021369 + MLT1I LTR MaLR 107 407 -2 427 370 34 13 chr9 85251202 85251437 -57020007 + MIR SINE MIR 2 241 -21 626 52 0 0 chr9 85251565 85251642 -57019802 + Alu SINE Alu 223 299 -12 1829 114 26 68 chr9 85251858 85252206 -57019238 - AluSx SINE Alu 0 335 1 443 225 120 21 chr9 85252885 85253027 -57018417 - MER117 DNA MER1_type -41 156 1 183 224 0 61 chr9 85253631 85253680 -57017764 - L2 LINE L2 -24 3248 3203 2208 201 174 48 chr9 85253693 85254295 -57017149 + L1ME1 LINE L1 5219 5957 -209 2216 102 0 49 chr9 85254295 85254619 -57016825 + AluSx SINE Alu 1 308 -4 2208 201 174 48 chr9 85254619 85254856 -57016588 + L1ME1 LINE L1 5957 6163 -3 21 0 0 0 chr9 85254858 85254879 -57016565 + AT_rich Low_complexity Low_complexity 1 21 0 318 309 172 25 chr9 85255765 85255969 -57015475 + L1MC4a LINE L1 5673 5906 -1902 247 246 140 70 chr9 85257390 85257504 -57013940 + L2 LINE L2 3189 3310 -3 365 231 77 19 chr9 85257644 85257748 -57013696 + L2 LINE L2 3197 3306 -7 1150 194 43 32 chr9 85258744 85258997 -57012447 - AluJo SINE Alu -15 297 42 25 83 0 0 chr9 85259039 85259099 -57012345 + AT_rich Low_complexity Low_complexity 1 60 0 1400 154 0 5 chr9 85259374 85259582 -57011862 + AluJb SINE Alu 3 209 -103 237 33 0 0 chr9 85259609 85259639 -57011805 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1465 166 34 0 chr9 85260059 85260294 -57011150 + AluJb SINE Alu 29 271 -41 2075 110 17 7 chr9 85261007 85261298 -57010146 - AluSx SINE Alu -18 294 1 838 210 30 6 chr9 85261916 85262083 -57009361 - MER5B DNA MER1_type -7 171 1 880 199 162 0 chr9 85262091 85262282 -57009162 - MER58A DNA MER1_type 0 224 3 904 200 88 0 chr9 85262827 85262997 -57008447 + MER5A DNA MER1_type 1 185 -4 270 0 0 0 chr9 85263283 85263313 -57008131 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2394 84 3 0 chr9 85263789 85264086 -57007358 - AluSp SINE Alu -15 298 1 266 185 9 102 chr9 85264908 85265016 -57006428 + HERVFH19I LTR ERV1 241 338 -7381 558 253 25 40 chr9 85265542 85265740 -57005704 - MIR SINE MIR -1 261 67 192 77 0 0 chr9 85266192 85266218 -57005226 + (TG)n Simple_repeat Simple_repeat 1 26 0 2756 150 29 7 chr9 85267244 85267690 -57003754 + LTR32 LTR ERVL 15 470 -1 2139 103 7 0 chr9 85267822 85268103 -57003341 + AluSx SINE Alu 1 283 -29 275 0 0 28 chr9 85268106 85268142 -57003302 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1978 219 173 48 chr9 85268976 85269578 -57001866 + L1ME1 LINE L1 5219 5956 -210 2046 120 0 52 chr9 85269578 85269903 -57001541 + AluSx SINE Alu 1 308 -4 1978 219 173 48 chr9 85269903 85270141 -57001303 + L1ME1 LINE L1 5956 6163 -3 21 0 0 0 chr9 85270143 85270164 -57001280 + AT_rich Low_complexity Low_complexity 1 21 0 808 149 0 27 chr9 85271048 85271196 -57000248 + AluSg/x SINE Alu 168 311 -1 247 291 119 49 chr9 85272616 85272860 -56998584 + L2 LINE L2 1685 1945 -1369 1424 175 82 7 chr9 85272913 85273205 -56998239 - L1MC1 LINE L1 -1 6332 6019 1986 123 0 20 chr9 85273208 85273500 -56997944 + AluSc SINE Alu 1 286 -23 811 184 84 0 chr9 85273601 85273791 -56997653 - L1 LINE L1 -1019 5127 4922 2139 130 7 3 chr9 85273843 85274150 -56997294 + AluSx SINE Alu 1 308 -4 342 121 0 17 chr9 85274276 85274334 -56997110 - LTR54 LTR ERV1 0 510 454 369 172 0 0 chr9 85274347 85274411 -56997033 - AluSc SINE Alu -105 194 131 * 1467 196 52 74 chr9 85274410 85274813 -56996631 - LTR54 LTR ERV1 -45 465 72 826 152 0 0 chr9 85274830 85274955 -56996489 - FLAM_C SINE Alu -13 130 6 469 174 0 23 chr9 85274958 85275044 -56996400 - LTR54 LTR ERV1 -426 84 1 493 184 65 24 chr9 85275061 85275216 -56996228 - LTR49 LTR ERV1 -7 780 484 2247 126 0 0 chr9 85275223 85275533 -56995911 - AluSx SINE Alu -2 310 1 2626 141 32 20 chr9 85275573 85276012 -56995432 + MER72 LTR ERV1 279 722 0 537 253 65 41 chr9 85276023 85276193 -56995251 + MER58A DNA MER1_type 48 221 -3 232 243 0 0 chr9 85276349 85276419 -56995025 + A-rich Low_complexity Low_complexity 1 70 0 457 154 0 0 chr9 85276654 85276719 -56994725 + AluS SINE Alu 2 66 -246 218 237 40 40 chr9 85276990 85277066 -56994378 + L2 LINE L2 2989 3064 -249 2055 145 3 0 chr9 85277400 85277711 -56993733 + AluJb SINE Alu 1 312 0 250 264 52 45 chr9 85277744 85277899 -56993545 + L1MC5 LINE L1 7030 7185 -776 1185 216 25 4 chr9 85278039 85278284 -56993160 + AluJo SINE Alu 45 294 -18 318 268 42 29 chr9 85278426 85278617 -56992827 + MIR SINE MIR 24 261 -1 207 0 0 0 chr9 85278645 85278668 -56992776 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 796 213 0 7 chr9 85278668 85278818 -56992626 - AluJb SINE Alu -32 280 132 604 141 215 15 chr9 85279002 85279137 -56992307 + MER4C LTR ERV1 286 447 -18 263 210 57 153 chr9 85279153 85279382 -56992062 - L1M4 LINE L1 -888 5258 5052 359 247 172 43 chr9 85279413 85279599 -56991845 - HAL1 LINE L1 -2 2505 2296 * 481 224 189 43 chr9 85279585 85279934 -56991510 - HAL1 LINE L1 0 2507 2108 256 155 28 84 chr9 85281160 85281231 -56990213 - AluJ/FLAM SINE Alu -235 67 1 771 309 66 55 chr9 85281276 85281667 -56989777 - L3 LINE CR1 -437 1140 740 2482 96 62 6 chr9 85281667 85282022 -56989422 - THE1C LTR MaLR 0 375 1 771 309 66 55 chr9 85282022 85282173 -56989271 - L3 LINE CR1 -837 740 592 373 229 73 42 chr9 85282202 85282298 -56989146 - L2 LINE L2 -3 3310 3212 2289 98 17 0 chr9 85282298 85282595 -56988849 - AluSx SINE Alu -10 302 1 1357 203 8 8 chr9 85282626 85282887 -56988557 - AluJb SINE Alu -26 286 26 183 42 0 0 chr9 85282918 85282942 -56988502 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 962 196 11 0 chr9 85283074 85283258 -56988186 - AluJ SINE Alu -10 302 117 203 315 237 23 chr9 85283410 85283629 -56987815 - L2 LINE L2 -1198 2116 1851 2168 131 0 16 chr9 85283630 85283942 -56987502 + AluSx SINE Alu 1 307 -5 816 166 0 76 chr9 85284452 85284597 -56986847 - AluJ SINE Alu -176 136 3 585 188 0 0 chr9 85284724 85284825 -56986619 - MER67A LTR ERV1 0 543 443 287 314 133 23 chr9 85284828 85285092 -56986352 - HAL1b LINE L1 -480 868 576 2311 119 0 0 chr9 85285092 85285395 -56986049 - AluSp SINE Alu -10 303 1 296 65 11 185 chr9 85285887 85285979 -56985465 + MER5C DNA MER1_type 249 324 0 230 209 73 82 chr9 85286265 85286375 -56985069 + L1MC/D LINE L1 5708 5816 -1992 241 200 0 0 chr9 85286570 85286610 -56984834 - Alu SINE Alu -262 40 1 291 247 10 31 chr9 85286920 85287017 -56984427 + L2 LINE L2 2565 2659 -655 1896 153 0 7 chr9 85287219 85287520 -56983924 - AluSq SINE Alu -6 307 9 319 235 92 0 chr9 85287838 85287936 -56983508 - L1ME LINE L1 -386 5735 5629 1812 160 0 4 chr9 85288164 85288445 -56982999 + AluSx SINE Alu 23 302 -10 1784 155 35 0 chr9 85288637 85288921 -56982523 + LTR32 LTR ERVL 8 301 -170 2140 133 0 0 chr9 85289513 85289813 -56981631 - AluSg SINE Alu -9 301 2 2417 84 0 7 chr9 85289824 85290133 -56981311 - AluY SINE Alu -4 307 1 378 148 0 0 chr9 85290139 85290200 -56981244 + MSTD LTR MaLR 336 396 0 1907 131 0 4 chr9 85290480 85290755 -56980689 - Tigger3(Golem) DNA MER2_type -1 3028 2755 1917 107 3 98 chr9 85290755 85291092 -56980352 + AluY SINE Alu 1 305 -6 454 245 69 63 chr9 85291161 85291320 -56980124 - MIR SINE MIR -72 190 31 475 323 59 14 chr9 85291489 85291709 -56979735 + L2 LINE L2 1990 2219 -1095 1599 205 110 2 chr9 85291710 85292119 -56979325 + Charlie4a DNA MER1_type 40 492 -16 306 50 0 0 chr9 85292156 85292196 -56979248 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2284 96 3 0 chr9 85292199 85292491 -56978953 - AluSx SINE Alu -19 293 1 839 286 93 7 chr9 85292498 85292767 -56978677 - MER21B LTR ERV1 -553 310 19 660 181 35 0 chr9 85292904 85293020 -56978424 + FAM SINE Alu 35 154 -31 490 136 0 0 chr9 85293430 85293496 -56977948 + FRAM/FAM SINE Alu 25 90 -95 223 309 60 12 chr9 85293697 85293781 -56977663 - MIR SINE MIR -102 160 73 903 189 0 6 chr9 85293784 85293943 -56977501 - AluJo SINE Alu -120 192 35 1355 223 28 0 chr9 85293971 85294258 -56977186 - MER58B DNA MER1_type -39 302 8 473 74 123 0 chr9 85294356 85294437 -56977007 + LTR23 LTR ERV1 3 93 -344 1317 115 102 71 chr9 85294446 85294573 -56976871 + LTR23 LTR ERV1 2 124 -313 2081 118 0 67 chr9 85294573 85294904 -56976540 - AluSg SINE Alu -1 309 1 1317 115 102 71 chr9 85294904 85295071 -56976373 + LTR23 LTR ERV1 124 305 -132 914 215 55 39 chr9 85295071 85295327 -56976117 + AluJb SINE Alu 1 260 -52 261 221 0 0 chr9 85295963 85296031 -56975413 + (CA)n Simple_repeat Simple_repeat 1 68 0 625 169 119 0 chr9 85296334 85296452 -56974992 - FLAM_C SINE Alu -10 133 2 1943 143 0 27 chr9 85296778 85296939 -56974505 - AluJb SINE Alu -20 292 141 2129 138 0 7 chr9 85296939 85297244 -56974200 - AluSx SINE Alu -9 303 1 1943 143 0 27 chr9 85297244 85297382 -56974062 - AluJb SINE Alu -171 141 1 21 0 0 0 chr9 85297383 85297404 -56974040 + AT_rich Low_complexity Low_complexity 1 21 0 380 153 23 137 chr9 85297618 85297720 -56973724 + MIR SINE MIR 120 205 -57 291 114 0 0 chr9 85297720 85297764 -56973680 + (CA)n Simple_repeat Simple_repeat 2 45 0 380 153 23 137 chr9 85297764 85297792 -56973652 + MIR SINE MIR 205 235 -27 1567 150 54 46 chr9 85297917 85298197 -56973247 - AluJo SINE Alu -30 282 1 1363 225 152 17 chr9 85298967 85299077 -56972367 + MLT1C LTR MaLR 4 98 -369 1909 182 25 8 chr9 85299077 85299435 -56972009 + MLT1A1 LTR MaLR 1 364 -1 1363 225 152 17 chr9 85299435 85299733 -56971711 + MLT1C LTR MaLR 98 467 0 908 251 76 92 chr9 85299995 85300491 -56970953 + MLT1G LTR MaLR 1 502 -65 444 118 0 0 chr9 85300496 85300564 -56970880 + (TA)n Simple_repeat Simple_repeat 2 69 0 1439 178 56 7 chr9 85300567 85300836 -56970608 - AluJo SINE Alu -30 282 1 2187 121 0 10 chr9 85301033 85301339 -56970105 - AluSc SINE Alu -6 303 1 394 210 114 85 chr9 85302667 85302843 -56968601 - MIR SINE MIR -36 226 46 850 235 111 42 chr9 85302885 85303191 -56968253 - MER46C DNA MER2_type -3 335 9 243 0 0 0 chr9 85304076 85304103 -56967341 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 312 27 0 0 chr9 85304102 85304139 -56967305 + (GA)n Simple_repeat Simple_repeat 2 38 0 2822 213 27 32 chr9 85304686 85305283 -56966161 + MER77 LTR ERV1 3 596 -9 667 258 154 32 chr9 85305282 85305651 -56965793 - MLT1J1 LTR MaLR -32 414 1 * 327 212 22 80 chr9 85305698 85305835 -56965609 - MER113 DNA MER1_type? -392 129 1 1981 116 7 58 chr9 85306993 85307303 -56964141 + AluSx SINE Alu 16 309 -3 23 0 0 0 chr9 85307396 85307419 -56964025 + AT_rich Low_complexity Low_complexity 1 23 0 264 374 40 0 chr9 85307826 85308000 -56963444 - LTR67 LTR ERVL -35 522 342 2198 190 54 5 chr9 85308026 85308432 -56963012 - MSTB LTR MaLR 0 426 1 465 340 14 0 chr9 85308530 85308677 -56962767 - LTR67 LTR ERVL -365 192 44 2689 234 51 33 chr9 85309153 85309802 -56961642 + MER97c DNA MER1_type? 24 689 -401 2337 98 3 0 chr9 85309802 85310108 -56961336 - AluSq SINE Alu -6 307 1 2689 234 51 33 chr9 85310108 85310183 -56961261 + MER97c DNA MER1_type? 689 761 -329 541 167 28 19 chr9 85310186 85310294 -56961150 - L1PA16 LINE L1 0 6166 6058 599 180 18 36 chr9 85310294 85310309 -56961135 + MER97a DNA MER1_type? 731 745 -149 1839 163 14 0 chr9 85310309 85310592 -56960852 - AluSx SINE Alu -23 289 3 599 180 18 36 chr9 85310592 85310732 -56960712 + MER97a DNA MER1_type? 745 885 -9 352 286 36 18 chr9 85311116 85311228 -56960216 - MIR SINE MIR -92 170 57 1140 144 6 0 chr9 85311965 85312139 -56959305 - AluSg/x SINE Alu 0 312 138 2345 144 16 96 chr9 85312326 85312920 -56958524 + LTR12 LTR ERV1 171 713 -1 1804 134 0 4 chr9 85312920 85313188 -56958256 + AluSx SINE Alu 27 293 -19 1572 201 3 3 chr9 85313244 85313537 -56957907 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr9 85313800 85313822 -56957622 + AT_rich Low_complexity Low_complexity 1 22 0 2109 132 0 0 chr9 85313829 85314117 -56957327 + AluSx SINE Alu 1 288 -24 1656 150 0 8 chr9 85315557 85315817 -56955627 - AluJb SINE Alu -8 304 47 851 166 96 48 chr9 85315832 85316019 -56955425 - MER58A DNA MER1_type -28 196 1 1075 247 72 36 chr9 85316198 85316630 -56954814 - HAL1b LINE L1 -228 1120 669 1918 143 11 4 chr9 85316630 85316930 -56954514 - AluSx SINE Alu 0 302 1 1562 145 30 11 chr9 85316955 85317217 -56954227 - AluJb SINE Alu -27 285 19 417 253 136 13 chr9 85317274 85317428 -56954016 - HAL1b LINE L1 -695 653 481 350 331 101 15 chr9 85317520 85317813 -56953631 - HAL1b LINE L1 -758 590 251 1683 133 80 56 chr9 85317813 85318115 -56953329 - AluSx SINE Alu -3 309 1 350 331 101 15 chr9 85318115 85318226 -56953218 - HAL1b LINE L1 -1097 251 151 24 67 0 0 chr9 85318537 85318582 -56952862 + AT_rich Low_complexity Low_complexity 1 45 0 548 142 168 0 chr9 85318582 85318695 -56952749 - FLAM_C SINE Alu -1 132 1 2244 120 0 0 chr9 85319268 85319577 -56951867 + AluSq SINE Alu 1 309 -4 232 293 71 10 chr9 85320871 85320970 -56950474 - HAL1 LINE L1 -2048 459 355 1961 131 3 7 chr9 85321016 85321346 -56950098 - AluSx SINE Alu 0 329 1 319 188 118 47 chr9 85321356 85321441 -56950003 - HAL1 LINE L1 -2412 95 5 226 333 32 24 chr9 85321576 85321702 -56949742 - L2 LINE L2 -6 3266 3140 1651 146 149 3 chr9 85321782 85322091 -56949353 + MLT1A1 LTR MaLR 1 354 -11 209 172 31 62 chr9 85322104 85322168 -56949276 - L2 LINE L2 -206 3066 3005 183 311 126 19 chr9 85322831 85322934 -56948510 + L2 LINE L2 3181 3294 -19 5185 38 5 0 chr9 85323652 85324260 -56947184 - L1PA3 LINE L1 -3 6152 5542 1899 178 118 124 chr9 85324731 85325463 -56945981 - LTR8A LTR ERV1 0 727 1 1623 148 31 77 chr9 85325783 85325831 -56945613 - MLT2C1 LTR ERVL -71 326 277 2100 129 7 3 chr9 85325831 85326125 -56945319 + AluSx SINE Alu 1 295 -17 1623 148 31 77 chr9 85326125 85326401 -56945043 - MLT2C1 LTR ERVL -120 277 17 21 57 0 0 chr9 85326621 85326656 -56944788 + AT_rich Low_complexity Low_complexity 1 35 0 1956 93 23 0 chr9 85326737 85326995 -56944449 + AluSx SINE Alu 38 301 -11 391 384 13 13 chr9 85328478 85328707 -56942737 + MIR SINE MIR 28 256 -6 1855 157 28 0 chr9 85328742 85329029 -56942415 - AluJb SINE Alu -17 295 1 1634 224 97 93 chr9 85329109 85329174 -56942270 - L1ME3A LINE L1 -59 6111 6048 2078 132 7 3 chr9 85329174 85329470 -56941974 + AluSx SINE Alu 1 297 -15 1634 224 97 93 chr9 85329470 85329787 -56941657 - L1ME3A LINE L1 -122 6048 5734 925 219 0 0 chr9 85329787 85329951 -56941493 + FAM SINE Alu 1 164 -11 1634 224 97 93 chr9 85329951 85330267 -56941177 - L1ME3A LINE L1 -436 5734 5409 403 216 114 74 chr9 85331079 85331255 -56940189 - L1MC5 LINE L1 -35 7926 7744 418 198 26 0 chr9 85331295 85331411 -56940033 + CT-rich Low_complexity Low_complexity 3 121 0 1090 163 0 0 chr9 85331436 85331589 -56939855 - FRAM SINE Alu -30 146 1 2037 150 0 0 chr9 85331702 85331996 -56939448 - AluSx SINE Alu -18 294 1 1712 199 128 65 chr9 85331998 85332063 -56939381 - MLT1E1 LTR MaLR -2 652 593 1896 167 17 0 chr9 85332063 85332189 -56939255 + AluSx SINE Alu 1 123 -189 318 106 0 0 chr9 85332189 85332236 -56939208 + (CA)n Simple_repeat Simple_repeat 2 48 0 1896 167 17 0 chr9 85332236 85332403 -56939041 + AluSx SINE Alu 123 299 -13 1712 199 128 65 chr9 85332403 85332756 -56938688 - MLT1E1 LTR MaLR -61 593 188 1652 145 0 41 chr9 85332756 85333025 -56938419 - AluJo SINE Alu -15 297 40 1712 199 128 65 chr9 85333025 85333185 -56938259 - MLT1E1 LTR MaLR -466 188 39 1092 221 9 39 chr9 85333224 85333405 -56938039 - MER58A DNA MER1_type -2196 224 50 1873 132 0 4 chr9 85333405 85333671 -56937773 + AluJb SINE Alu 31 295 -17 1092 221 9 39 chr9 85333671 85333720 -56937724 - MER58A DNA MER1_type -2370 50 1 1875 139 0 63 chr9 85333865 85334182 -56937262 - AluSq SINE Alu -16 297 1 2262 97 0 35 chr9 85334266 85334577 -56936867 - AluSq SINE Alu -13 300 1 1343 234 55 41 chr9 85334915 85335351 -56936093 + L1ME3 LINE L1 5711 6152 -10 278 336 119 0 chr9 85335589 85335732 -56935712 + MER91A DNA MER1_type 14 173 -23 2287 96 13 7 chr9 85336662 85336965 -56934479 - AluSx SINE Alu -7 305 1 354 154 0 44 chr9 85337997 85338088 -56933356 + CT-rich Low_complexity Low_complexity 2 88 0 2179 157 11 14 chr9 85338421 85338785 -56932659 - MLT1A1 LTR MaLR 0 365 3 218 200 20 0 chr9 85339275 85339325 -56932119 + (CACAG)n Simple_repeat Simple_repeat 4 54 0 314 246 196 0 chr9 85339802 85339940 -56931504 + MIR SINE MIR 98 262 0 934 200 70 51 chr9 85339981 85340187 -56931257 + MER5C DNA MER1_type 4 220 -104 1844 141 10 13 chr9 85340187 85340485 -56930959 + AluSx SINE Alu 1 297 -15 934 200 70 51 chr9 85340485 85340593 -56930851 + MER5C DNA MER1_type 220 324 0 374 228 107 147 chr9 85341342 85341912 -56929532 + MLT1H LTR MaLR 3 549 0 2033 147 39 6 chr9 85341912 85342245 -56929199 + MER2 DNA MER2_type 1 344 0 22 0 0 0 chr9 85342422 85342444 -56929000 + AT_rich Low_complexity Low_complexity 1 22 0 2212 126 3 0 chr9 85343437 85343746 -56927698 - AluSx SINE Alu 0 312 3 29 70 0 0 chr9 85344113 85344170 -56927274 + AT_rich Low_complexity Low_complexity 1 57 0 812 246 27 23 chr9 85344338 85344598 -56926846 - L1MC4a LINE L1 -1882 5926 5666 312 65 11 185 chr9 85344843 85344935 -56926509 - MER5C DNA MER1_type 0 324 249 191 281 156 0 chr9 85345059 85345123 -56926321 - MER5C DNA MER1_type -200 124 51 2143 119 0 3 chr9 85345427 85345730 -56925714 + AluSx SINE Alu 1 302 -10 404 76 0 15 chr9 85346432 85346498 -56924946 + (GA)n Simple_repeat Simple_repeat 2 66 0 302 311 74 0 chr9 85346540 85346730 -56924714 - AluSg/x SINE Alu 0 300 97 26 0 0 0 chr9 85346971 85346997 -56924447 + AT_rich Low_complexity Low_complexity 1 26 0 727 187 50 50 chr9 85347145 85347284 -56924160 - LTR8 LTR ERV1 -509 182 41 2412 73 3 0 chr9 85347284 85347587 -56923857 - AluSp SINE Alu -7 306 3 727 187 50 50 chr9 85347587 85347629 -56923815 - LTR8 LTR ERV1 -649 42 1 227 300 57 0 chr9 85347660 85347730 -56923714 + L3 LINE CR1 1497 1570 -7 30 59 0 0 chr9 85347957 85348008 -56923436 + AT_rich Low_complexity Low_complexity 1 51 0 806 148 0 0 chr9 85348009 85348131 -56923313 - AluJb SINE Alu -190 122 1 364 212 12 10 chr9 85348321 85348428 -56923016 + L1MC5 LINE L1 7832 8042 0 239 259 155 69 chr9 85348730 85348904 -56922540 - MER5A DNA MER1_type 0 189 1 253 226 0 19 chr9 85349995 85350048 -56921396 + L3b LINE CR1 1392 1443 -140 393 230 44 35 chr9 85350570 85350683 -56920761 - MIR3 SINE MIR -7 201 88 320 328 31 23 chr9 85350731 85350859 -56920585 + MIR3 SINE MIR 39 167 -41 2066 99 3 7 chr9 85351437 85351719 -56919725 + AluSx SINE Alu 1 281 -31 917 99 25 6 chr9 85351722 85351883 -56919561 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 2074 101 0 0 chr9 85351892 85352168 -56919276 + AluSx SINE Alu 15 290 -22 1276 216 125 37 chr9 85352221 85352596 -56918848 - MER31A LTR ERV1 -76 409 2 2154 86 0 0 chr9 85353508 85353824 -56917620 + AluSg SINE Alu 1 316 0 248 302 48 8 chr9 85354016 85354142 -56917302 + L2 LINE L2 2481 2611 -703 289 323 11 21 chr9 85354199 85354292 -56917152 + MIR SINE MIR 160 251 -11 748 148 0 16 chr9 85354372 85354500 -56916944 + FLAM_C SINE Alu 2 127 -16 2209 105 3 0 chr9 85354524 85354828 -56916616 + AluSq SINE Alu 1 305 -8 438 297 38 34 chr9 85355167 85355403 -56916041 + LTR37B LTR ERV1 209 445 -23 4953 100 1 27 chr9 85355473 85355735 -56915709 + LTR8 LTR ERV1 1 268 -423 1840 124 19 25 chr9 85355735 85356049 -56915395 + AluSq SINE Alu 1 312 -1 4953 100 1 27 chr9 85356049 85356493 -56914951 + LTR8 LTR ERV1 268 689 -2 799 190 16 22 chr9 85356562 85356746 -56914698 - MER106A DNA MER1_type 0 236 54 1382 183 88 9 chr9 85356918 85357235 -56914209 + MER2 DNA MER2_type 1 342 -2 3404 152 64 21 chr9 85357435 85358060 -56913384 - LTR51 LTR ERV1 0 671 20 1653 180 7 0 chr9 85358167 85358467 -56912977 + AluJo SINE Alu 1 302 -10 183 42 0 0 chr9 85358599 85358623 -56912821 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1298 199 8 8 chr9 85358654 85358915 -56912529 + AluJb SINE Alu 26 286 -26 2188 111 7 0 chr9 85358947 85359254 -56912190 + AluSx SINE Alu 1 309 -3 336 121 0 17 chr9 85359380 85359438 -56912006 - LTR54 LTR ERV1 0 510 454 383 172 0 0 chr9 85359451 85359515 -56911929 - AluSc SINE Alu -105 194 131 * 1426 196 52 74 chr9 85359514 85359917 -56911527 - LTR54 LTR ERV1 -45 465 72 819 154 0 0 chr9 85359924 85360060 -56911384 - FLAM_C SINE Alu -2 141 6 467 174 0 23 chr9 85360063 85360149 -56911295 - LTR54 LTR ERV1 -426 84 1 2019 153 74 76 chr9 85360169 85360328 -56911116 - LTR49 LTR ERV1 -10 585 427 2179 119 0 0 chr9 85360328 85360638 -56910806 - AluSx SINE Alu -2 310 1 2019 153 74 76 chr9 85360638 85360949 -56910495 - LTR49 LTR ERV1 -168 427 116 23 0 0 0 chr9 85361075 85361098 -56910346 + AT_rich Low_complexity Low_complexity 1 23 0 1934 124 0 35 chr9 85361408 85361722 -56909722 + AluSx SINE Alu 1 303 -9 1996 137 0 9 chr9 85362196 85362511 -56908933 - AluSx SINE Alu 0 312 1 342 240 23 44 chr9 85363326 85363442 -56908002 - MIR SINE MIR -59 149 33 2601 126 15 15 chr9 85363565 85363969 -56907475 - MER65A LTR ERV1 -2 443 40 1348 19 0 0 chr9 85364118 85364272 -56907172 + L1PA2 LINE L1 5998 6151 -4 283 246 183 32 chr9 85364272 85364398 -56907046 - MIR SINE MIR -111 151 7 269 212 81 50 chr9 85364445 85364544 -56906900 - L1ME3A LINE L1 -73 6091 5990 1899 138 10 0 chr9 85364640 85364937 -56906507 + AluSx SINE Alu 1 300 -12 281 343 124 32 chr9 85365022 85365337 -56906107 - L2 LINE L2 -12 3260 2917 1089 88 14 0 chr9 85365777 85365925 -56905519 + AluSq/x SINE Alu 1 150 -162 1456 107 5 0 chr9 85365925 85366131 -56905313 + AluSq SINE Alu 100 306 -7 648 137 19 251 chr9 85366134 85366328 -56905116 + MER63 DNA MER1_type 8 104 -826 1920 120 0 28 chr9 85366328 85366654 -56904790 - AluSq SINE Alu 0 320 3 648 137 19 251 chr9 85366654 85366773 -56904671 + MER63 DNA MER1_type 104 249 -681 498 195 24 18 chr9 85367046 85367215 -56904229 + GA-rich Low_complexity Low_complexity 1 170 0 3123 167 82 18 chr9 85367222 85367834 -56903610 + L1MCa LINE L1 46 696 -5730 767 231 86 27 chr9 85367847 85368068 -56903376 - MSTD LTR MaLR -162 234 1 3535 222 79 5 chr9 85368071 85368995 -56902449 + L1M4 LINE L1 3371 4362 -1784 482 190 0 0 chr9 85369020 85369099 -56902345 + AluJ/FLAM SINE Alu 1 79 -233 1939 126 15 56 chr9 85369101 85369443 -56902001 + L1MC1 LINE L1 5634 5961 -372 991 128 13 0 chr9 85369445 85369594 -56901850 + L1MC1 LINE L1 6173 6323 -10 1740 174 0 0 chr9 85369595 85369883 -56901561 + AluJo SINE Alu 1 288 -24 381 273 67 73 chr9 85370060 85370210 -56901234 + MIR SINE MIR 65 213 -49 468 278 263 6 chr9 85370533 85370875 -56900569 + L2 LINE L2 2451 2880 -434 7335 54 0 1 chr9 85371044 85372302 -56899142 + L1PA5 LINE L1 4898 6153 -1 245 253 127 0 chr9 85372592 85372671 -56898773 + L2 LINE L2 696 784 -2530 273 146 0 0 chr9 85373043 85373091 -56898353 + (A)n Simple_repeat Simple_repeat 1 48 0 1911 104 93 0 chr9 85373309 85373579 -56897865 + AluSx SINE Alu 1 295 -17 1400 145 145 19 chr9 85373993 85374255 -56897189 - AluJb SINE Alu -7 295 1 214 328 67 30 chr9 85374286 85374420 -56897024 + L2 LINE L2 1155 1293 -2021 294 269 5 135 chr9 85374434 85374627 -56896817 - MIR SINE MIR -64 198 31 1854 114 4 7 chr9 85375055 85375326 -56896118 + AluSx SINE Alu 5 274 -38 260 72 0 72 chr9 85375326 85375395 -56896049 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 1380 160 71 4 chr9 85375904 85376172 -56895272 + AluJb SINE Alu 1 286 -26 322 250 53 0 chr9 85376339 85376415 -56895029 + L2 LINE L2 3186 3265 -7 181 219 0 0 chr9 85376859 85376891 -56894553 - L2 LINE L2 -19 3294 3263 298 299 0 23 chr9 85376892 85376979 -56894465 - MIR SINE MIR -99 163 79 843 227 72 50 chr9 85377897 85378174 -56893270 - MER21B LTR ERV1 -55 808 526 4707 121 8 37 chr9 85378176 85378425 -56893019 - LTR8 LTR ERV1 0 691 437 425 90 0 0 chr9 85378425 85378492 -56892952 + L1PA8 LINE L1 6104 6170 -2 4707 121 8 37 chr9 85378492 85378953 -56892491 - LTR8 LTR ERV1 -254 437 1 1281 260 78 87 chr9 85378953 85379190 -56892254 - MER21B LTR ERV1 -336 527 289 2171 89 30 0 chr9 85379190 85379493 -56891951 - AluSx SINE Alu 0 312 1 1281 260 78 87 chr9 85379493 85379769 -56891675 - MER21B LTR ERV1 -574 289 19 609 165 37 0 chr9 85379914 85380023 -56891421 + FAM SINE Alu 42 154 -31 806 136 37 43 chr9 85380433 85380595 -56890849 + FAM SINE Alu 1 49 0 242 242 111 144 chr9 85380651 85380673 -56890771 - MIR3 SINE MIR -27 181 160 2324 172 58 17 chr9 85380673 85381156 -56890288 - MLT1D LTR MaLR -2 503 1 242 242 111 144 chr9 85381156 85381190 -56890254 - MIR3 SINE MIR -48 160 126 2167 119 0 0 chr9 85381190 85381501 -56889943 - AluSx SINE Alu -1 311 1 242 242 111 144 chr9 85381501 85381596 -56889848 - MIR3 SINE MIR -82 126 34 288 236 213 69 chr9 85381719 85381893 -56889551 - L3 LINE CR1 -1 1576 1378 447 285 61 65 chr9 85382207 85382552 -56888892 + MLT1J2 LTR MaLR 53 390 -19 2228 101 0 0 chr9 85382770 85383068 -56888376 - AluSx SINE Alu -10 302 5 1473 201 3 13 chr9 85383660 85383973 -56887471 + AluJb SINE Alu 2 311 -1 209 388 97 23 chr9 85384756 85385014 -56886430 - L2 LINE L2 -858 2456 2180 189 161 0 0 chr9 85385087 85385118 -56886326 - L2 LINE L2 -42 3271 3241 1839 128 21 0 chr9 85385544 85385832 -56885612 + AluSx SINE Alu 4 297 -15 393 194 0 112 chr9 85385932 85385994 -56885450 - L2 LINE L2 -40 3273 3224 2102 108 20 0 chr9 85385994 85386290 -56885154 - AluSx SINE Alu -10 302 1 393 194 0 112 chr9 85386290 85386325 -56885119 - L2 LINE L2 -89 3224 3187 189 0 0 0 chr9 85386998 85387019 -56884425 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 660 179 34 0 chr9 85387021 85387138 -56884306 - FLAM_A SINE Alu -12 121 1 319 276 71 0 chr9 85387460 85387558 -56883886 - MIR SINE MIR -60 202 98 1451 143 23 83 chr9 85387774 85388074 -56883370 + AluSx SINE Alu 1 282 -30 268 0 95 0 chr9 85388077 85388119 -56883325 + A-rich Low_complexity Low_complexity 2 47 0 320 338 119 12 chr9 85388190 85388350 -56883094 - MIR3 SINE MIR 0 208 32 2222 87 13 0 chr9 85388466 85388775 -56882669 - AluSp SINE Alu 0 313 1 261 266 93 36 chr9 85388797 85388936 -56882508 + L1MEc LINE L1 50 196 -6200 1854 128 30 33 chr9 85388952 85389257 -56882187 - AluSx SINE Alu -8 304 1 1213 158 23 5 chr9 85389261 85389482 -56881962 - AluJb SINE Alu -18 294 70 286 314 63 21 chr9 85389526 85389717 -56881727 + L1MEc LINE L1 225 423 -5973 303 218 81 0 chr9 85390016 85390103 -56881341 + L1MEc LINE L1 661 754 -5451 982 186 34 34 chr9 85390107 85390311 -56881133 - MLT1A1 LTR MaLR 0 365 162 1988 106 27 17 chr9 85390319 85390620 -56880824 + AluSq SINE Alu 1 304 -9 4680 147 36 30 chr9 85390696 85391590 -56879854 + pTR5 LTR ERV1 743 1641 -797 347 93 0 0 chr9 85392477 85392520 -56878924 + (CA)n Simple_repeat Simple_repeat 2 44 0 2278 97 0 0 chr9 85392893 85393201 -56878243 + AluSc SINE Alu 1 308 -1 204 125 0 0 chr9 85394860 85394892 -56876552 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 919 157 133 43 chr9 85394996 85395206 -56876238 + MLT2B3 LTR ERVL 306 534 -20 296 77 62 0 chr9 85395226 85395291 -56876153 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 257 139 0 32 chr9 85395308 85395365 -56876079 + MLT2B3 LTR ERVL 503 554 0 980 270 179 7 chr9 85395621 85396120 -56875324 + L2 LINE L2 2725 3309 -4 877 306 73 22 chr9 85396268 85396637 -56874807 + MLT1I LTR MaLR 1 388 -21 388 261 51 22 chr9 85396646 85396784 -56874660 - MIR SINE MIR -72 190 49 275 83 0 0 chr9 85396811 85396847 -56874597 - U2 snRNA snRNA -152 36 1 1709 146 6 59 chr9 85397862 85398183 -56873261 - AluJo SINE Alu -8 304 1 622 74 66 18 chr9 85398774 85399050 -56872394 + (TG)n Simple_repeat Simple_repeat 1 289 0 220 250 62 0 chr9 85399344 85399408 -56872036 - MIR SINE MIR -70 192 125 200 293 17 17 chr9 85399551 85399609 -56871835 - MIR SINE MIR -175 87 30 420 196 11 22 chr9 85400720 85400812 -56870632 - L1MA9 LINE L1 -681 5631 5541 2225 156 91 19 chr9 85400817 85400962 -56870482 + L1MA9 LINE L1 5625 5758 -533 195 42 0 0 chr9 85400962 85400986 -56870458 + (CA)n Simple_repeat Simple_repeat 2 25 0 2225 156 91 19 chr9 85400986 85401376 -56870068 + L1MA9 LINE L1 5758 6291 0 2321 113 3 0 chr9 85401413 85401724 -56869720 + AluSq SINE Alu 2 313 0 226 167 0 0 chr9 85401843 85401885 -56869559 + L2 LINE L2 3272 3313 0 365 279 0 0 chr9 85402407 85402486 -56868958 - MER5A DNA MER1_type -107 82 4 221 184 61 0 chr9 85402511 85402560 -56868884 - MER5B DNA MER1_type -14 164 113 759 158 33 0 chr9 85402560 85402680 -56868764 + FLAM_C SINE Alu 1 124 -9 213 121 0 0 chr9 85402695 85402728 -56868716 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 611 250 16 0 chr9 85402733 85402861 -56868583 - MER5B DNA MER1_type -48 130 1 605 178 140 84 chr9 85402873 85403087 -56868357 - MER106A DNA MER1_type -4 232 7 6035 32 10 68 chr9 85404102 85404934 -56866510 - L1P LINE L1 -1643 4503 3721 2124 109 7 0 chr9 85405091 85405375 -56866069 - AluSx SINE Alu -25 287 2 729 168 0 42 chr9 85407019 85407138 -56864306 + FLAM_A SINE Alu 1 114 -19 300 102 0 0 chr9 85407139 85407188 -56864256 + (CA)n Simple_repeat Simple_repeat 2 50 0 591 265 26 48 chr9 85407276 85407465 -56863979 + MIR SINE MIR 16 200 -62 1784 151 0 7 chr9 85408151 85408423 -56863021 + AluJb SINE Alu 4 273 -39 396 293 151 62 chr9 85408907 85409371 -56862073 - L2 LINE L2 -467 2847 2343 224 256 128 0 chr9 85409614 85409700 -56861744 + L2 LINE L2 2443 2539 -775 2181 88 0 37 chr9 85409728 85410024 -56861420 - AluSg SINE Alu -12 298 14 716 220 5 73 chr9 85410703 85410894 -56860550 + MER5B DNA MER1_type 1 178 0 315 365 51 0 chr9 85411392 85411529 -56859915 - MIR3 SINE MIR -23 185 42 365 230 191 14 chr9 85413191 85413363 -56858081 - Charlie8 DNA MER1_type -2164 253 92 412 198 43 78 chr9 85413823 85413902 -56857542 + LTR33A LTR ERVL 404 479 -44 1419 183 53 18 chr9 85413902 85414186 -56857258 + AluJo SINE Alu 1 294 -18 412 198 43 78 chr9 85414186 85414222 -56857222 + LTR33A LTR ERVL 479 515 -8 2871 247 29 25 chr9 85414558 85415381 -56856063 - L1ME1 LINE L1 -5 6161 5336 2004 146 10 3 chr9 85415390 85415699 -56855745 - AluSx SINE Alu -1 311 1 2279 95 0 37 chr9 85415727 85415904 -56855540 - L1PB2 LINE L1 -3 6148 5987 2250 98 3 0 chr9 85415904 85416199 -56855245 - AluSq SINE Alu -17 296 1 2279 95 0 37 chr9 85416199 85416346 -56855098 - L1PB2 LINE L1 -164 5987 5836 2490 80 0 6 chr9 85416378 85416692 -56854752 + AluSp SINE Alu 1 312 -1 952 269 64 10 chr9 85416700 85417105 -56854339 - L1ME1 LINE L1 -804 5342 4916 338 264 104 35 chr9 85417448 85417625 -56853819 + MLT1J2 LTR MaLR 269 409 0 2040 112 30 17 chr9 85417744 85418040 -56853404 - AluJb SINE Alu -12 300 1 276 287 133 35 chr9 85418596 85418739 -56852705 + MIR3 SINE MIR 4 160 -48 1966 121 7 4 chr9 85418955 85419236 -56852208 + AluSx SINE Alu 20 301 -11 414 0 0 0 chr9 85419256 85419302 -56852142 + (CA)n Simple_repeat Simple_repeat 2 47 0 204 308 0 0 chr9 85419314 85419366 -56852078 - MIR SINE MIR 0 262 211 1990 290 28 6 chr9 85419865 85420403 -56851041 - MLT1H1 LTR MaLR 0 555 6 363 314 245 5 chr9 85421672 85421876 -56849568 + MIR SINE MIR 4 256 -6 443 271 73 37 chr9 85422115 85422333 -56849111 - MIR SINE MIR -17 245 20 255 61 0 0 chr9 85422681 85422714 -56848730 + (A)n Simple_repeat Simple_repeat 1 33 0 2577 186 36 26 chr9 85422864 85423364 -56848080 + MLT1D LTR MaLR 1 505 0 960 296 55 10 chr9 85423364 85423749 -56847695 - MLT1I LTR MaLR -7 402 1 262 302 120 62 chr9 85423754 85424012 -56847432 - L2 LINE L2 -81 3232 2960 3007 113 19 7 chr9 85425695 85426118 -56845326 - MSTA LTR MaLR 0 428 1 1608 190 246 2 chr9 85426312 85426718 -56844726 + MLT1D LTR MaLR 1 505 0 14344 127 24 50 chr9 85426779 85426898 -56844546 + Tigger1 DNA MER2_type 4 124 -2294 461 178 0 0 chr9 85426898 85426971 -56844473 - FLAM SINE Alu -20 123 51 14344 127 24 50 chr9 85426971 85428311 -56843133 + Tigger1 DNA MER2_type 124 1452 -966 2171 96 3 40 chr9 85428311 85428614 -56842830 - AluSx SINE Alu -20 292 1 14344 127 24 50 chr9 85428614 85429521 -56841923 + Tigger1 DNA MER2_type 1452 2381 -37 283 206 187 126 chr9 85429886 85429946 -56841498 - L1ME1 LINE L1 -5 6161 6106 2374 94 0 0 chr9 85429946 85430244 -56841200 - AluSq SINE Alu -15 298 1 283 206 187 126 chr9 85430244 85430258 -56841186 - L1ME1 LINE L1 -60 6106 6094 1615 159 24 35 chr9 85430258 85430548 -56840896 - AluJo SINE Alu -25 287 1 283 206 187 126 chr9 85430548 85430686 -56840758 - L1ME1 LINE L1 -72 6094 5935 405 280 63 6 chr9 85431316 85431491 -56839953 + MIR SINE MIR 78 262 0 25 65 0 0 chr9 85431519 85431565 -56839879 + AT_rich Low_complexity Low_complexity 1 46 0 4219 134 55 22 chr9 85431565 85432261 -56839183 - LTR62 LTR ERVK 0 719 1 294 258 52 21 chr9 85432363 85432460 -56838984 - MLT1H LTR MaLR -16 533 434 508 277 13 19 chr9 85432600 85432755 -56838689 - MLT1H LTR MaLR -375 174 21 28 0 0 0 chr9 85434133 85434161 -56837283 + AT_rich Low_complexity Low_complexity 1 28 0 1995 104 41 0 chr9 85434647 85434940 -56836504 + AluSg SINE Alu 1 304 0 1939 178 0 0 chr9 85435526 85435830 -56835614 - AluJb SINE Alu -7 305 2 1702 146 3 74 chr9 85436243 85436566 -56834878 + AluJo SINE Alu 6 305 -7 382 212 83 40 chr9 85436566 85436690 -56834754 - LTR37B LTR ERV1 -26 438 313 249 214 0 0 chr9 85436694 85436750 -56834694 + (TA)n Simple_repeat Simple_repeat 1 56 0 350 189 44 128 chr9 85436801 85436981 -56834463 - LTR37B LTR ERV1 -190 278 114 914 166 13 0 chr9 85437031 85437182 -56834262 + MER58B DNA MER1_type 189 341 0 604 188 18 9 chr9 85437538 85437650 -56833794 - MER45A DNA AcHobo 0 178 66 196 263 118 40 chr9 85437716 85437792 -56833652 + L2 LINE L2 3225 3306 -7 607 183 24 1 chr9 85437937 85438076 -56833368 - L1M4c LINE L1 -5022 1350 1093 695 161 34 0 chr9 85438163 85438281 -56833163 - LTR12 LTR ERV1 -234 480 359 338 219 0 0 chr9 85438281 85438354 -56833090 - LTR30 LTR ERV1 -98 624 552 1731 83 15 136 chr9 85438354 85438678 -56832766 - LTR12 LTR ERV1 -429 285 1 424 241 0 36 chr9 85439792 85439904 -56831540 - MIR SINE MIR -9 253 146 186 236 14 69 chr9 85441096 85441168 -56830276 + MIR SINE MIR 35 102 -160 467 283 43 22 chr9 85441458 85441596 -56829848 - MIR SINE MIR -96 166 26 422 243 153 31 chr9 85441990 85442004 -56829440 - L1ME4a LINE L1 -1 6120 6109 5145 74 44 0 chr9 85442004 85442636 -56828808 + PABL_A LTR ERV1 1 660 0 422 243 153 31 chr9 85442636 85442799 -56828645 - L1ME4a LINE L1 -12 6109 5900 249 108 0 0 chr9 85442799 85442836 -56828608 + (CA)n Simple_repeat Simple_repeat 1 37 0 422 243 153 31 chr9 85442836 85442912 -56828532 - L1ME4a LINE L1 -221 5900 5835 8120 126 13 9 chr9 85442936 85443927 -56827517 - L1MA3 LINE L1 0 7724 6739 2662 27 0 0 chr9 85443927 85444220 -56827224 - L1PA4 LINE L1 -3 6152 5860 8120 126 13 9 chr9 85444220 85445548 -56825896 - L1MA3 LINE L1 -985 6739 5389 5974 118 47 27 chr9 85445551 85448058 -56823386 - SVA Other Other -683 1386 432 7811 174 67 10 chr9 85448062 85449915 -56821529 - L1MA3 LINE L1 -2191 5374 3407 15742 45 2 1 chr9 85449920 85452534 -56818910 - L1PA5 LINE L1 -3 6151 3550 1786 95 0 0 chr9 85452649 85452881 -56818563 - AluY SINE Alu -79 232 1 2298 98 0 0 chr9 85452984 85453281 -56818163 - AluSg SINE Alu -13 297 1 405 0 0 0 chr9 85453654 85453699 -56817745 + (TG)n Simple_repeat Simple_repeat 2 46 0 246 312 151 35 chr9 85453723 85453922 -56817522 + MIR SINE MIR 24 245 -17 249 258 65 0 chr9 85454596 85454658 -56816786 + MER106A DNA MER1_type 7 72 -164 10674 169 20 2 chr9 85454761 85456516 -56814928 - L1M1 LINE L1 -5762 1803 17 587 296 32 86 chr9 85456527 85457087 -56814357 - L1ME LINE L1 -299 5822 5293 * 996 217 9 9 chr9 85457085 85457311 -56814133 - L1PA16 LINE L1 -16 6150 5925 387 0 0 0 chr9 85457492 85457535 -56813909 + (TG)n Simple_repeat Simple_repeat 2 44 0 1797 149 7 4 chr9 85457553 85457834 -56813610 - AluSx SINE Alu -11 301 20 276 287 133 35 chr9 85458050 85458193 -56813251 - MIR3 SINE MIR -48 160 4 2040 112 30 17 chr9 85458749 85459045 -56812399 + AluJb SINE Alu 1 300 -12 338 264 104 35 chr9 85459164 85459341 -56812103 - MLT1J2 LTR MaLR 0 428 269 952 269 64 10 chr9 85459684 85460089 -56811355 + L1M4 LINE L1 4916 5342 -804 2360 109 3 0 chr9 85460097 85460409 -56811035 - AluSq SINE Alu 0 313 1 660 253 55 84 chr9 85461471 85461708 -56809736 - MIR SINE MIR -21 241 12 1209 153 6 0 chr9 85461750 85461927 -56809517 + THE1B LTR MaLR 1 178 -186 12667 44 0 16 chr9 85462030 85464297 -56807147 + L1PA5 LINE L1 3874 6151 -3 1349 142 28 8 chr9 85464302 85464556 -56806888 + L1M1 LINE L1 3407 3665 -3900 241 204 74 0 chr9 85464838 85464892 -56806552 - L2 LINE L2 -7 3265 3208 373 321 79 6 chr9 85464921 85465086 -56806358 + MIR SINE MIR 5 181 -81 284 299 46 66 chr9 85465195 85465392 -56806052 + MIR SINE MIR 55 247 -15 189 143 32 32 chr9 85466567 85466630 -56804814 + GA-rich Low_complexity Low_complexity 1 63 0 2483 75 3 7 chr9 85466637 85466945 -56804499 + AluY SINE Alu 1 307 -4 225 211 28 28 chr9 85468873 85468944 -56802500 - MIR SINE MIR -50 212 142 * 1656 309 67 47 chr9 85468940 85469975 -56801469 - L2 LINE L2 -269 3044 1989 996 140 140 13 chr9 85470047 85470321 -56801123 - MLT1A1 LTR MaLR 0 365 1 1204 358 55 28 chr9 85470455 85471345 -56800099 - L2 LINE L2 -1608 1706 793 342 0 0 0 chr9 85472470 85472508 -56798936 + (TC)n Simple_repeat Simple_repeat 1 38 0 548 353 55 29 chr9 85472596 85473204 -56798240 + L2 LINE L2 2600 3272 0 374 266 64 0 chr9 85473229 85473338 -56798106 + L2 LINE L2 3198 3313 0 290 240 190 0 chr9 85474209 85474309 -56797135 - MER103 DNA DNA -46 120 2 246 262 36 12 chr9 85474329 85474413 -56797031 + LTR67 LTR ERVL 1 86 -471 239 237 0 17 chr9 85474806 85474865 -56796579 + LTR67 LTR ERVL 491 548 -9 2401 83 3 0 chr9 85478832 85479133 -56792311 + AluSp SINE Alu 1 302 -11 1154 256 57 70 chr9 85480645 85481156 -56790288 - LTR33A LTR ERVL -16 507 4 396 268 134 71 chr9 85481451 85481962 -56789482 + MLT1K LTR MaLR 104 582 -6 1121 203 23 14 chr9 85482453 85482670 -56788774 + MER20 DNA MER1_type 1 219 0 32 43 0 0 chr9 85484162 85484208 -56787236 + AT_rich Low_complexity Low_complexity 1 46 0 440 292 184 5 chr9 85484621 85484992 -56786452 - L1MB8 LINE L1 -231 5947 5506 2611 261 110 84 chr9 85485022 85488206 -56783238 - L1MB8 LINE L1 -758 5388 2122 518 291 77 49 chr9 85488595 85489409 -56782035 - L1MEd LINE L1 -4579 1731 844 635 286 251 22 chr9 85489415 85489785 -56781659 + L2 LINE L2 2824 3278 -35 517 314 24 60 chr9 85489831 85490079 -56781365 - L1MEd LINE L1 -5357 762 524 485 262 153 43 chr9 85490254 85490296 -56781148 + L1M4 LINE L1 2714 2750 -3396 1995 133 3 7 chr9 85490296 85490596 -56780848 - AluSx SINE Alu -13 299 1 485 262 153 43 chr9 85490596 85491077 -56780367 + L1M4 LINE L1 2750 3374 -2772 738 209 0 14 chr9 85491916 85492055 -56779389 + MLT1E LTR MaLR 456 592 -1 561 310 64 79 chr9 85492055 85492397 -56779047 + L2 LINE L2 2923 3259 -13 820 243 118 24 chr9 85493583 85493838 -56777606 + LTR16C LTR ERVL 213 491 0 874 198 62 46 chr9 85495134 85495465 -56775979 + MLT1D LTR MaLR 13 390 0 348 330 85 10 chr9 85495465 85495665 -56775779 - MIR SINE MIR -35 227 13 1966 154 7 3 chr9 85497120 85497418 -56774026 - AluSq SINE Alu -14 299 1 1616 219 17 70 chr9 85498212 85498737 -56772707 - MLT1D LTR MaLR 0 505 9 341 223 85 0 chr9 85500176 85500270 -56771174 + MIR SINE MIR 89 190 -72 1202 193 14 5 chr9 85500280 85500498 -56770946 - MER58A DNA MER1_type 0 224 5 264 249 185 58 chr9 85500868 85501041 -56770403 + LTR33A LTR ERVL 325 519 -4 324 279 0 0 chr9 85501152 85501231 -56770213 - L2 LINE L2 -2 3270 3192 557 258 25 151 chr9 85501335 85501614 -56769830 - MIR SINE MIR -4 258 15 1140 138 6 11 chr9 85502184 85502358 -56769086 - FRAM SINE Alu 0 176 4 312 294 29 10 chr9 85502406 85502508 -56768936 - MIR SINE MIR -84 124 21 1268 196 18 28 chr9 85504360 85504686 -56766758 + MER33 DNA MER1_type 2 324 0 223 312 21 32 chr9 85505329 85505422 -56766022 - MIR3 SINE MIR -4 204 113 185 350 70 35 chr9 85505963 85506106 -56765338 - L3 LINE CR1 -27 1550 1403 194 225 90 63 chr9 85506175 85506286 -56765158 + MIR3 SINE MIR 64 177 -31 216 255 0 0 chr9 85506339 85506386 -56765058 + MIR SINE MIR 117 163 -99 1207 185 28 31 chr9 85506845 85507169 -56764275 + MER33 DNA MER1_type 2 324 0 1273 92 29 10 chr9 85508826 85509032 -56762412 - L1MA8 LINE L1 -78 6213 6004 261 0 0 0 chr9 85510519 85510548 -56760896 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr9 85510621 85510650 -56760794 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 85512477 85512499 -56758945 + AT_rich Low_complexity Low_complexity 1 22 0 202 187 27 40 chr9 85513911 85513986 -56757458 + (TTAA)n Simple_repeat Simple_repeat 1 74 0 496 281 119 36 chr9 85514014 85514267 -56757177 + HAL1b LINE L1 578 851 -497 328 322 83 16 chr9 85516231 85516352 -56755092 + MER5A DNA MER1_type 54 182 -7 313 324 34 92 chr9 85516565 85516803 -56754641 - L1MEd LINE L1 -5333 786 563 222 281 85 12 chr9 85517514 85517596 -56753848 + L2 LINE L2 3150 3237 -35 186 43 0 0 chr9 85517647 85517670 -56753774 + (ATG)n Simple_repeat Simple_repeat 3 25 0 280 316 0 0 chr9 85517962 85518038 -56753406 + CT-rich Low_complexity Low_complexity 4 79 0 356 332 74 49 chr9 85518201 85518445 -56752999 - MIR SINE MIR -10 252 3 180 111 0 0 chr9 85518876 85518903 -56752541 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 612 250 117 34 chr9 85519207 85519396 -56752048 + MLT1J LTR MaLR 226 445 -66 2046 119 3 39 chr9 85519396 85519706 -56751738 - AluSx SINE Alu -13 299 1 612 250 117 34 chr9 85519706 85519780 -56751664 + MLT1J LTR MaLR 445 511 0 672 245 55 84 chr9 85520768 85521005 -56750439 - MIR SINE MIR -21 241 12 1997 145 33 44 chr9 85521047 85521412 -56750032 + THE1B LTR MaLR 1 361 -3 372 22 0 0 chr9 85521413 85521458 -56749986 + (CA)n Simple_repeat Simple_repeat 1 45 0 441 323 30 0 chr9 85521609 85521742 -56749702 + MIR SINE MIR 76 212 -50 227 342 13 13 chr9 85522405 85522481 -56748963 - L2 LINE L2 0 3272 3197 27 29 0 0 chr9 85522494 85522528 -56748916 + AT_rich Low_complexity Low_complexity 1 34 0 545 276 16 104 chr9 85522813 85523063 -56748381 + MIR SINE MIR 34 261 -1 810 247 176 14 chr9 85523505 85523869 -56747575 - MLT1K LTR MaLR -5 583 161 1069 228 32 11 chr9 85524316 85524597 -56746847 + MLT2C1 LTR ERVL 4 290 -107 1741 154 97 6 chr9 85524637 85524956 -56746488 + MER7A DNA MER2_type 1 346 0 198 0 0 0 chr9 85524959 85524981 -56746463 + (CA)n Simple_repeat Simple_repeat 2 23 0 204 182 0 0 chr9 85524982 85525026 -56746418 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 260 133 0 0 chr9 85525029 85525074 -56746370 + MLT2F LTR ERVL 617 661 -2 281 257 75 47 chr9 85525343 85525501 -56745943 - MIR SINE MIR -49 213 54 465 345 34 11 chr9 85525534 85525711 -56745733 + MER5A DNA MER1_type 7 187 -2 19718 47 6 0 chr9 85525910 85529232 -56742212 + L1PA5 LINE L1 2812 6153 -1 1184 45 32 0 chr9 85530410 85530564 -56740880 - L1PA7 LINE L1 -1 6153 5995 443 188 0 0 chr9 85530587 85530667 -56740777 - Tigger5 DNA MER2_type 0 2323 2244 327 237 40 0 chr9 85530696 85530772 -56740672 - Tigger5 DNA MER2_type -2244 79 1 885 206 56 0 chr9 85531781 85531961 -56739483 - MIR SINE MIR -55 207 18 312 250 35 9 chr9 85534492 85534608 -56736836 - L1ME LINE L1 -294 5827 5709 214 367 82 39 chr9 85534797 85535053 -56736391 - L2 LINE L2 -118 3154 2888 340 350 146 36 chr9 85535231 85535833 -56735611 - L2 LINE L2 -337 2977 2310 558 235 0 17 chr9 85536636 85536815 -56734629 + CT-rich Low_complexity Low_complexity 4 179 0 312 91 0 0 chr9 85536815 85536859 -56734585 + (TCTCC)n Simple_repeat Simple_repeat 1 44 0 920 156 13 13 chr9 85536859 85537013 -56734431 - AluJb SINE Alu -11 301 148 635 297 95 14 chr9 85537704 85537987 -56733457 + MLT1J2 LTR MaLR 15 320 -130 735 238 37 16 chr9 85538217 85538406 -56733038 + MIR SINE MIR 10 202 -60 230 295 0 26 chr9 85539999 85540077 -56731367 - L2 LINE L2 -926 2388 2313 535 291 85 56 chr9 85540083 85540787 -56730657 + L1MC4a LINE L1 5131 5759 -403 242 200 31 15 chr9 85540831 85540896 -56730548 + L1ME4a LINE L1 5959 6024 -97 412 258 45 58 chr9 85541042 85541197 -56730247 + MIR SINE MIR 2 154 -108 269 190 63 0 chr9 85541589 85541668 -56729776 + HAL1 LINE L1 2290 2373 -134 348 226 36 0 chr9 85542497 85542581 -56728863 - Charlie4 DNA MER1_type -1684 277 191 654 229 32 0 chr9 85542676 85542833 -56728611 - Charlie4 DNA MER1_type -1787 174 13 1959 236 52 40 chr9 85543247 85543645 -56727799 + MLT1G LTR MaLR 10 418 -172 2239 95 13 7 chr9 85543645 85543950 -56727494 - AluY SINE Alu -2 309 3 1959 236 52 40 chr9 85543950 85544106 -56727338 + MLT1G LTR MaLR 418 571 -19 609 281 80 45 chr9 85544493 85544857 -56726587 + MLT1J2 LTR MaLR 81 442 -8 1427 246 18 0 chr9 85545152 85545486 -56725958 + MLT1A1 LTR MaLR 1 340 -25 1092 203 45 12 chr9 85545842 85546084 -56725360 - MER58 DNA MER1_type -2167 253 4 2259 110 40 35 chr9 85546530 85546903 -56724541 + THE1C LTR MaLR 1 375 0 383 317 6 27 chr9 85547227 85547410 -56724034 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 412 305 26 0 chr9 85547286 85547440 -56724004 + (CA)n Simple_repeat Simple_repeat 1 158 0 591 332 50 17 chr9 85547485 85547583 -56723861 + MIR SINE MIR 3 96 -166 1363 160 135 28 chr9 85547583 85547908 -56723536 + MER46B DNA MER2_type 2 236 0 591 332 50 17 chr9 85547908 85548050 -56723394 + MIR SINE MIR 96 251 -11 272 135 0 19 chr9 85548068 85548120 -56723324 + (TTC)n Simple_repeat Simple_repeat 2 52 0 302 91 18 0 chr9 85548815 85548870 -56722574 + (TC)n Simple_repeat Simple_repeat 1 56 0 180 0 0 0 chr9 85549060 85549080 -56722364 + (CATA)n Simple_repeat Simple_repeat 3 22 0 323 230 11 0 chr9 85549678 85549765 -56721679 + GA-rich Low_complexity Low_complexity 3 90 0 875 182 0 6 chr9 85549786 85549967 -56721477 + GA-rich Low_complexity Low_complexity 1 180 0 258 229 0 0 chr9 85549968 85550038 -56721406 + A-rich Low_complexity Low_complexity 1 70 0 2009 139 0 16 chr9 85550205 85550521 -56720923 + AluJb SINE Alu 1 311 -1 2399 192 40 4 chr9 85550682 85551156 -56720288 + L1MC3 LINE L1 7295 7785 0 878 181 66 0 chr9 85551299 85551481 -56719963 - AluJb SINE Alu 0 312 119 931 255 37 5 chr9 85552084 85552300 -56719144 + MER58A DNA MER1_type 2 224 0 34 0 0 0 chr9 85552380 85552414 -56719030 + AT_rich Low_complexity Low_complexity 1 34 0 243 0 0 0 chr9 85552438 85552465 -56718979 + (CA)n Simple_repeat Simple_repeat 2 28 0 2467 107 45 25 chr9 85553926 85554282 -56717162 + THE1B LTR MaLR 2 364 0 1081 278 124 10 chr9 85554320 85554723 -56716721 + MLT1J2 LTR MaLR 2 450 0 1751 224 42 44 chr9 85555081 85555585 -56715859 - L1MD2 LINE L1 -2 6357 5855 2884 140 30 102 chr9 85555586 85556144 -56715300 - MLT2B1 LTR ERVL 0 520 3 9971 143 24 20 chr9 85556146 85556809 -56714635 - ERVL-B1 LTR ERVL -7 5757 5098 7738 52 12 0 chr9 85556809 85557890 -56713554 - L1PA5 LINE L1 0 6154 5070 9971 143 24 20 chr9 85557890 85558852 -56712592 - ERVL-B1 LTR ERVL -666 5098 4126 7727 169 17 16 chr9 85558884 85560195 -56711249 - ERVL-B1 LTR ERVL -1583 4181 2870 3202 106 39 27 chr9 85560199 85560710 -56710734 - L1MA8 LINE L1 -2 6289 5773 5223 123 12 23 chr9 85560723 85561558 -56709886 - L1MA5A LINE L1 -2 6295 5470 186 43 0 0 chr9 85561598 85561621 -56709823 + (TTAAA)n Simple_repeat Simple_repeat 4 26 0 2216 145 6 78 chr9 85561622 85561983 -56709461 - L1MA5A LINE L1 -1317 4829 4509 2066 140 6 13 chr9 85561983 85562297 -56709147 - AluSx SINE Alu 0 312 1 2216 145 6 78 chr9 85562297 85562412 -56709032 - L1MA5A LINE L1 -1637 4509 4387 3082 230 21 28 chr9 85562434 85563460 -56707984 - L1MD2 LINE L1 -419 5940 4922 670 258 98 40 chr9 85563671 85563896 -56707548 + Charlie8 DNA MER1_type 39 276 -2141 210 71 0 0 chr9 85565226 85565254 -56706190 + (TC)n Simple_repeat Simple_repeat 2 29 0 1971 139 7 0 chr9 85565761 85566055 -56705389 + AluSx SINE Alu 1 296 -16 218 54 0 27 chr9 85566843 85566880 -56704564 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1495 162 33 29 chr9 85566893 85567165 -56704279 - AluJb SINE Alu -35 277 5 325 284 128 86 chr9 85567691 85568018 -56703426 + L2 LINE L2 2892 3232 -40 2024 122 0 3 chr9 85568812 85569100 -56702344 + AluSq SINE Alu 25 311 -2 519 293 74 52 chr9 85570004 85570233 -56701211 + L3 LINE CR1 510 743 -834 383 324 7 28 chr9 85570235 85570380 -56701064 + L3 LINE CR1 1276 1417 -160 198 71 0 0 chr9 85570381 85570409 -56701035 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2066 112 11 0 chr9 85570409 85570685 -56700759 - AluSc SINE Alu -30 279 1 187 320 90 13 chr9 85570844 85570922 -56700522 + L3 LINE CR1 1442 1525 -52 518 220 206 14 chr9 85570930 85571144 -56700300 + MER112 DNA MER1_type 1 255 -1 2225 214 26 8 chr9 85571145 85571613 -56699831 + MER66B LTR ERV1 1 476 -10 590 263 86 53 chr9 85571888 85572131 -56699313 - MLT1J LTR MaLR -249 262 12 2241 105 10 0 chr9 85573214 85573518 -56697926 - AluSq SINE Alu -6 307 1 6972 145 40 24 chr9 85573580 85574451 -56696993 - Tigger3b DNA MER2_type -1807 1221 324 2126 102 7 13 chr9 85574451 85574754 -56696690 + AluY SINE Alu 11 311 0 6972 145 40 24 chr9 85574754 85575084 -56696360 - Tigger3b DNA MER2_type -2704 324 1 3134 204 40 34 chr9 85575508 85576069 -56695375 - L1ME1 LINE L1 -166 6081 5520 1762 91 0 4 chr9 85576069 85576333 -56695111 + AluY SINE Alu 54 316 0 3134 204 40 34 chr9 85576333 85576681 -56694763 - L1ME1 LINE L1 -727 5520 5176 1079 232 28 19 chr9 85576678 85577040 -56694404 - L1ME1 LINE L1 -1722 4493 4129 * 288 178 21 0 chr9 85577042 85577123 -56694321 - L1MA2 LINE L1 -289 6011 5928 2762 248 48 25 chr9 85577127 85578398 -56693046 - L1ME1 LINE L1 -2317 3898 23 669 251 38 47 chr9 85578398 85578633 -56692811 - MER112 DNA MER1_type -27 233 1 333 240 128 51 chr9 85579128 85579324 -56692120 - L2 LINE L2 0 3313 3103 207 69 0 0 chr9 85581281 85581310 -56690134 + (CA)n Simple_repeat Simple_repeat 1 29 0 367 152 174 54 chr9 85585944 85586036 -56685408 - L1MB2 LINE L1 0 6171 6069 246 208 0 0 chr9 85587132 85587185 -56684259 + T-rich Low_complexity Low_complexity 2 54 0 393 314 6 64 chr9 85587909 85588081 -56683363 + MIR3 SINE MIR 36 197 -11 294 322 141 7 chr9 85588336 85588485 -56682959 - MIR3 SINE MIR -6 202 34 328 55 455 0 chr9 85588572 85588627 -56682817 - MADE1 DNA Mariner 0 80 1 264 30 0 0 chr9 85588785 85588818 -56682626 + (TG)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr9 85590549 85590570 -56680874 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1883 196 74 0 chr9 85590722 85591059 -56680385 + MLT1A1 LTR MaLR 1 362 -3 815 329 124 39 chr9 85592376 85593280 -56678164 + L2 LINE L2 1600 2580 -734 330 294 84 0 chr9 85593282 85593401 -56678043 - L2 LINE L2 -2 3270 3142 490 328 40 15 chr9 85593450 85593651 -56677793 + L2 LINE L2 2581 2786 -528 415 301 59 32 chr9 85594478 85594765 -56676679 - L1MC4a LINE L1 -82 6039 5746 641 178 96 7 chr9 85594789 85594924 -56676520 - MLT1A1 LTR MaLR -160 205 59 7040 78 12 2 chr9 85595010 85596371 -56675073 - L1PA8 LINE L1 0 6172 4813 567 288 22 63 chr9 85596374 85596645 -56674799 - L1MC4a LINE L1 -2205 5603 5344 329 343 83 45 chr9 85596763 85597183 -56674261 - L1MC4a LINE L1 -944 5202 4767 418 306 52 89 chr9 85597540 85597811 -56673633 + L2 LINE L2 2970 3230 -42 827 167 0 8 chr9 85598918 85599050 -56672394 - AluJb SINE Alu -179 133 3 738 290 121 53 chr9 85599706 85600103 -56671341 - MER115 DNA AcHobo -237 456 33 557 256 79 0 chr9 85600772 85600936 -56670508 + MIR SINE MIR 66 242 -20 1338 166 4 12 chr9 85601448 85601701 -56669743 - L1MB3 LINE L1 -7 6176 5926 1380 91 0 50 chr9 85602379 85602578 -56668866 + AluY SINE Alu 113 301 -10 26 30 0 0 chr9 85602811 85602844 -56668600 + AT_rich Low_complexity Low_complexity 1 33 0 2174 114 13 0 chr9 85604299 85604605 -56666839 - AluSx SINE Alu 0 312 3 342 311 97 20 chr9 85604855 85605051 -56666393 - Charlie8 DNA MER1_type -2206 211 1 183 281 78 0 chr9 85605405 85605469 -56665975 - MIR SINE MIR -95 113 45 492 256 94 0 chr9 85605524 85605641 -56665803 - MIR SINE MIR -74 188 61 437 330 45 17 chr9 85605955 85606131 -56665313 + MIR SINE MIR 3 183 -79 184 77 51 0 chr9 85606616 85606655 -56664789 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 919 148 11 77 chr9 85606733 85606915 -56664529 + AluSg/x SINE Alu 133 302 -10 221 95 0 24 chr9 85606933 85606975 -56664469 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 27 29 0 0 chr9 85607578 85607612 -56663832 + AT_rich Low_complexity Low_complexity 1 34 0 1794 161 21 4 chr9 85607866 85608146 -56663298 - AluJb SINE Alu -27 285 1 298 288 0 0 chr9 85609749 85609822 -56661622 + CT-rich Low_complexity Low_complexity 2 74 0 186 43 0 0 chr9 85609970 85609993 -56661451 + (TG)n Simple_repeat Simple_repeat 2 24 0 746 267 47 40 chr9 85610262 85610689 -56660755 - L1MB3 LINE L1 -397 5767 5338 2386 81 0 0 chr9 85610880 85611177 -56660267 - AluY SINE Alu -14 297 1 204 137 20 39 chr9 85611567 85611618 -56659826 + T-rich Low_complexity Low_complexity 5 54 0 24 0 0 0 chr9 85612447 85612471 -56658973 + AT_rich Low_complexity Low_complexity 1 24 0 324 70 0 0 chr9 85612742 85612785 -56658659 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 201 319 89 44 chr9 85612786 85612921 -56658523 - L2 LINE L2 -24 3289 3149 536 331 50 36 chr9 85613037 85613339 -56658105 - MLT1K LTR MaLR -108 480 175 246 265 162 17 chr9 85615186 85615303 -56656141 - MIR SINE MIR -65 143 19 2415 76 7 0 chr9 85616064 85616368 -56655076 - AluY SINE Alu -5 306 1 2311 109 0 3 chr9 85617622 85617933 -56653511 - AluSx SINE Alu -2 310 1 2396 74 6 10 chr9 85618366 85618677 -56652767 - AluY SINE Alu -1 310 1 200 395 73 8 chr9 85620897 85621021 -56650423 - L2 LINE L2 -4 3268 3137 432 0 0 0 chr9 85621808 85621856 -56649588 + (TG)n Simple_repeat Simple_repeat 1 48 0 216 209 19 124 chr9 85622236 85622341 -56649103 + L2 LINE L2 3179 3272 0 191 122 0 49 chr9 85622872 85622913 -56648531 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 237 132 0 0 chr9 85622914 85622952 -56648492 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 460 351 38 32 chr9 85624564 85624880 -56646564 - L1MC4a LINE L1 -1889 5919 5602 431 255 249 26 chr9 85624885 85625134 -56646310 - L1MC4a LINE L1 -607 5567 5259 665 289 66 39 chr9 85625513 85625970 -56645474 - HAL1 LINE L1 -905 1602 1134 191 388 15 0 chr9 85626946 85627013 -56644431 + L2 LINE L2 3205 3272 0 28 48 0 0 chr9 85627747 85627789 -56643655 + AT_rich Low_complexity Low_complexity 1 42 0 555 300 127 0 chr9 85629362 85629582 -56641862 + MIR SINE MIR 15 262 0 408 250 0 0 chr9 85629719 85629823 -56641621 + MER103 DNA DNA 11 114 -52 476 165 0 10 chr9 85629839 85629936 -56641508 + CT-rich Low_complexity Low_complexity 2 97 0 288 283 208 0 chr9 85630133 85630239 -56641205 + MER5A DNA MER1_type 50 177 -12 277 376 102 5 chr9 85631023 85631228 -56640216 + MIR SINE MIR 36 260 -2 1988 149 7 3 chr9 85631590 85631892 -56639552 + AluSx SINE Alu 1 303 -9 346 293 19 32 chr9 85631897 85632054 -56639390 + HAL1 LINE L1 127 281 -2226 887 267 105 33 chr9 85632108 85632837 -56638607 + HAL1 LINE L1 407 1226 -1281 412 205 24 24 chr9 85632837 85632964 -56638480 + HsTC2 DNA Tc2 1766 1892 -6 2221 101 0 3 chr9 85633034 85633330 -56638114 - AluY SINE Alu -16 295 1 448 220 39 28 chr9 85633462 85633644 -56637800 + HAL1 LINE L1 2256 2439 -68 216 0 0 0 chr9 85634015 85634039 -56637405 + (T)n Simple_repeat Simple_repeat 1 24 0 371 82 55 0 chr9 85637478 85637551 -56633893 + (TA)n Simple_repeat Simple_repeat 1 77 0 22 0 0 0 chr9 85638033 85638055 -56633389 + AT_rich Low_complexity Low_complexity 1 22 0 2189 124 0 0 chr9 85638060 85638366 -56633078 + AluSx SINE Alu 1 306 -6 439 311 78 11 chr9 85638484 85638664 -56632780 + MIR3 SINE MIR 8 199 -9 371 272 44 60 chr9 85639889 85640203 -56631241 - MLT1H LTR MaLR -35 374 59 867 175 35 10 chr9 85641378 85641578 -56629866 - L1MD3 LINE L1 0 7995 7791 23 33 0 0 chr9 85641895 85641925 -56629519 + AT_rich Low_complexity Low_complexity 1 30 0 2768 10 0 10 chr9 85642314 85642627 -56628817 + AluY SINE Alu 1 310 -1 225 0 0 0 chr9 85642639 85642664 -56628780 + (A)n Simple_repeat Simple_repeat 1 25 0 2003 134 3 17 chr9 85643011 85643310 -56628134 + AluJb SINE Alu 4 298 -14 361 250 5 149 chr9 85644126 85644334 -56627110 - MER5B DNA MER1_type 0 178 1 180 362 7 65 chr9 85645854 85645992 -56625452 + MIR SINE MIR 13 142 -120 180 200 20 80 chr9 85646074 85646124 -56625320 + L2 LINE L2 3203 3249 -23 2564 111 11 0 chr9 85646353 85646713 -56624731 + THE1B LTR MaLR 1 364 0 415 188 10 10 chr9 85646971 85647067 -56624377 + FLAM_A SINE Alu 45 140 -2 484 290 161 7 chr9 85647138 85647293 -56624151 - MER5A DNA MER1_type 0 189 11 937 197 17 6 chr9 85649498 85649676 -56621768 - L1PA16 LINE L1 -5 6161 5982 225 0 0 0 chr9 85650886 85650911 -56620533 + (TTAAA)n Simple_repeat Simple_repeat 4 28 0 2073 139 0 0 chr9 85650911 85651206 -56620238 - AluSx SINE Alu -17 295 1 532 264 13 39 chr9 85651714 85651869 -56619575 - MER115 DNA AcHobo -39 654 504 211 262 0 0 chr9 85652322 85652364 -56619080 + MER91C DNA MER1_type 1 42 -154 429 312 32 0 chr9 85652431 85652556 -56618888 + MER91C DNA MER1_type 12 140 0 452 309 69 32 chr9 85654111 85654328 -56617116 - MLT1L LTR MaLR -15 600 376 2379 103 0 0 chr9 85654644 85654955 -56616489 - AluSx SINE Alu -1 311 1 30 59 0 0 chr9 85655181 85655232 -56616212 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 85657247 85657268 -56614176 + AT_rich Low_complexity Low_complexity 1 21 0 220 329 58 0 chr9 85657780 85657917 -56613527 + L2 LINE L2 2431 2575 -739 1734 209 25 0 chr9 85657932 85658257 -56613187 + MER58B DNA MER1_type 1 333 -8 562 266 113 57 chr9 85658265 85658619 -56612825 + L2 LINE L2 2601 2974 -340 416 271 35 54 chr9 85658667 85658870 -56612574 + L2 LINE L2 3108 3306 -7 215 300 29 0 chr9 85659047 85659117 -56612327 + (CATG)n Simple_repeat Simple_repeat 2 73 0 2380 78 0 13 chr9 85659328 85659635 -56611809 - AluY SINE Alu -8 303 1 192 200 0 0 chr9 85659999 85660049 -56611395 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 217 304 14 29 chr9 85660483 85660552 -56610892 + MIR SINE MIR 78 145 -117 2320 83 17 0 chr9 85660805 85661095 -56610349 + AluSp SINE Alu 1 295 -18 226 325 92 25 chr9 85661334 85661454 -56609990 + MIR SINE MIR 6 133 -129 506 301 96 8 chr9 85661460 85661699 -56609745 - MIR SINE MIR -1 261 2 779 270 98 51 chr9 85661718 85661937 -56609507 - MLT1I LTR MaLR 0 409 163 1062 167 88 15 chr9 85661937 85662141 -56609303 - MER20 DNA MER1_type 0 219 1 779 270 98 51 chr9 85662141 85662310 -56609134 - MLT1I LTR MaLR -246 163 3 1059 171 31 21 chr9 85662410 85662603 -56608841 + MER58A DNA MER1_type 30 224 0 266 202 411 16 chr9 85662900 85663029 -56608415 - L1ME2 LINE L1 -23 6141 5962 306 220 22 22 chr9 85663060 85663151 -56608293 - L1MC5 LINE L1 -37 7924 7834 1597 200 4 7 chr9 85663152 85663432 -56608012 + AluJb SINE Alu 1 279 -33 180 0 0 0 chr9 85663432 85663452 -56607992 + (CA)n Simple_repeat Simple_repeat 1 20 0 197 180 20 0 chr9 85663489 85663539 -56607905 + CT-rich Low_complexity Low_complexity 2 52 0 394 228 71 55 chr9 85663614 85663741 -56607703 + MIR SINE MIR 123 251 -11 192 125 0 0 chr9 85663752 85663784 -56607660 + (CAT)n Simple_repeat Simple_repeat 2 33 0 650 267 25 0 chr9 85665167 85665328 -56606116 - MER5A DNA MER1_type -2 187 23 237 281 135 0 chr9 85667131 85667227 -56604217 + L2 LINE L2 3189 3297 -16 252 0 0 0 chr9 85667380 85667408 -56604036 + (T)n Simple_repeat Simple_repeat 1 28 0 918 264 19 0 chr9 85669358 85669574 -56601870 + MIR SINE MIR 32 251 -11 259 306 10 20 chr9 85669760 85669858 -56601586 - L1ME LINE L1 -543 5578 5482 407 290 99 36 chr9 85669934 85670237 -56601207 - L1ME LINE L1 -834 5312 4991 2236 92 3 0 chr9 85670239 85670545 -56600899 - AluSp SINE Alu 0 307 1 206 320 8 23 chr9 85671580 85671708 -56599736 + T-rich Low_complexity Low_complexity 5 130 0 420 329 67 7 chr9 85671987 85672136 -56599308 + MIR SINE MIR 36 193 -69 2547 120 11 22 chr9 85673715 85674081 -56597363 + THE1B LTR MaLR 1 362 -2 643 262 68 60 chr9 85675435 85676277 -56595167 - L1MC4 LINE L1 -156 7886 7101 21 0 0 0 chr9 85676431 85676452 -56594992 + AT_rich Low_complexity Low_complexity 1 21 0 5718 85 20 0 chr9 85676459 85677210 -56594234 + L1MA1 LINE L1 5537 6302 0 462 243 79 34 chr9 85677282 85677459 -56593985 - MIR3 SINE MIR -6 202 18 26 30 0 0 chr9 85677749 85677782 -56593662 + AT_rich Low_complexity Low_complexity 1 33 0 470 273 128 44 chr9 85677794 85678183 -56593261 - L2 LINE L2 -5 3308 2887 185 0 40 0 chr9 85678227 85678252 -56593192 + (TTG)n Simple_repeat Simple_repeat 2 27 0 346 155 58 29 chr9 85678503 85678677 -56592767 + (CA)n Simple_repeat Simple_repeat 2 180 0 1651 218 37 29 chr9 85680556 85680965 -56590479 - MER31B LTR ERV1 -53 413 2 408 20 0 0 chr9 85682008 85682057 -56589387 + (CA)n Simple_repeat Simple_repeat 2 50 0 638 259 102 4 chr9 85682124 85682399 -56589045 + LTR16A1 LTR ERVL 190 457 0 379 289 19 0 chr9 85682630 85682765 -56588679 - MIR SINE MIR -67 141 2 377 302 9 9 chr9 85683473 85683589 -56587855 + L2 LINE L2 2945 3060 -212 1615 147 31 16 chr9 85684113 85684371 -56587073 - AluSx SINE Alu -19 293 32 300 254 192 8 chr9 85685090 85685220 -56586224 - L2 LINE L2 0 3313 3160 388 318 39 13 chr9 85685674 85685828 -56585616 - MIR SINE MIR -17 245 88 336 311 87 38 chr9 85686243 85686426 -56585018 - MIR SINE MIR -52 210 19 293 245 28 57 chr9 85687093 85687199 -56584245 - MIR SINE MIR -89 119 17 549 238 219 0 chr9 85687622 85687773 -56583671 + MER5A DNA MER1_type 6 189 0 210 118 0 0 chr9 85687984 85688018 -56583426 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr9 85688021 85688044 -56583400 + AT_rich Low_complexity Low_complexity 1 23 0 2279 128 0 0 chr9 85688064 85688376 -56583068 - AluSx SINE Alu 0 312 1 2125 217 50 7 chr9 85688392 85688830 -56582614 - LTR40b LTR ERVL 0 462 6 254 368 57 0 chr9 85689261 85689367 -56582077 + L3 LINE CR1 1410 1521 -56 381 294 0 37 chr9 85689436 85689545 -56581899 + MER63 DNA MER1_type 1 731 -331 240 382 102 5 chr9 85689633 85689819 -56581625 + L3b LINE CR1 1377 1580 -3 1665 190 0 3 chr9 85689839 85690139 -56581305 + AluJb SINE Alu 6 304 -8 1308 201 0 0 chr9 85692149 85692368 -56579076 + MER58A DNA MER1_type 6 224 0 300 83 0 0 chr9 85694010 85694058 -56577386 + (CA)n Simple_repeat Simple_repeat 2 49 0 428 301 38 0 chr9 85695287 85695420 -56576024 + MARNA DNA Mariner 244 381 -205 274 214 12 36 chr9 85695991 85696075 -56575369 + MARNA DNA Mariner 393 474 -112 301 269 27 118 chr9 85696091 85696173 -56575271 + MIR SINE MIR 35 92 -170 1082 135 81 0 chr9 85696173 85696358 -56575086 - L1MA5A LINE L1 -3 6294 6095 301 269 27 118 chr9 85696358 85696461 -56574983 + MIR SINE MIR 92 203 -59 435 280 140 47 chr9 85698189 85698400 -56573044 - MIR SINE MIR 0 262 33 22 0 0 0 chr9 85698411 85698433 -56573011 + AT_rich Low_complexity Low_complexity 1 22 0 2212 93 0 0 chr9 85698984 85699312 -56572132 + AluSq SINE Alu 5 332 0 499 235 18 65 chr9 85699620 85699790 -56571654 + MIR SINE MIR 73 234 -28 867 226 26 35 chr9 85699806 85700036 -56571408 + MIR SINE MIR 7 234 -28 200 339 110 16 chr9 85701481 85701608 -56569836 - MIR3 SINE MIR -16 192 54 379 247 54 48 chr9 85704510 85704538 -56566906 - MIR SINE MIR -2 260 234 365 225 0 25 chr9 85704538 85704618 -56566826 - MER116 DNA Mariner -2 78 1 379 247 54 48 chr9 85704618 85704775 -56566669 - MIR SINE MIR -28 234 74 225 132 0 0 chr9 85704940 85704978 -56566466 + (CAT)n Simple_repeat Simple_repeat 1 38 0 1013 236 57 5 chr9 85705741 85705953 -56565491 + MER58A DNA MER1_type 1 223 -1 266 270 230 7 chr9 85706456 85706608 -56564836 + MIR SINE MIR 74 259 -3 586 273 67 79 chr9 85708020 85708475 -56562969 - MLT1J LTR MaLR 0 511 23 937 248 22 14 chr9 85709146 85709368 -56562076 + MER58A DNA MER1_type 1 224 0 645 3 98 33 chr9 85709498 85709811 -56561633 + (TA)n Simple_repeat Simple_repeat 1 333 0 209 167 0 37 chr9 85709814 85709868 -56561576 + (TTA)n Simple_repeat Simple_repeat 1 52 0 2487 143 14 14 chr9 85709931 85710294 -56561150 - MLT1A1 LTR MaLR 0 365 3 288 309 0 71 chr9 85710425 85710551 -56560893 + MIR3 SINE MIR 59 175 -33 677 227 167 0 chr9 85710792 85710960 -56560484 - MIR SINE MIR -3 259 74 27 49 0 0 chr9 85711816 85711857 -56559587 + AT_rich Low_complexity Low_complexity 1 41 0 2167 103 10 3 chr9 85712115 85712415 -56559029 - AluSx SINE Alu -10 302 1 291 314 21 36 chr9 85713070 85713210 -56558234 - MIR SINE MIR -110 152 15 1878 205 130 0 chr9 85713320 85713690 -56557754 + MER47B DNA MER2_type 1 418 0 23 0 0 0 chr9 85714054 85714077 -56557367 + AT_rich Low_complexity Low_complexity 1 23 0 3049 129 19 0 chr9 85717544 85717964 -56553480 + MSTC LTR MaLR 1 428 0 283 254 110 51 chr9 85718462 85718580 -56552864 + MIR SINE MIR 18 142 -66 188 366 0 0 chr9 85721049 85721131 -56550313 + MIR SINE MIR 154 235 -27 201 88 73 15 chr9 85721312 85721380 -56550064 + (TA)n Simple_repeat Simple_repeat 1 72 0 2297 119 0 0 chr9 85721514 85721825 -56549619 + AluSx SINE Alu 1 311 -1 463 101 145 0 chr9 85722017 85722086 -56549358 - MADE1 DNA Mariner 0 80 2 216 0 0 0 chr9 85723191 85723215 -56548229 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 207 167 0 0 chr9 85723231 85723267 -56548177 + GA-rich Low_complexity Low_complexity 2 37 0 207 0 0 0 chr9 85723820 85723843 -56547601 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 21 0 0 0 chr9 85723963 85723984 -56547460 + AT_rich Low_complexity Low_complexity 1 21 0 673 237 118 5 chr9 85725141 85725352 -56546092 - Charlie8 DNA MER1_type -2182 235 1 268 317 0 29 chr9 85726554 85726658 -56544786 - L3b LINE CR1 -194 1389 1289 22 0 0 0 chr9 85727512 85727534 -56543910 + AT_rich Low_complexity Low_complexity 1 22 0 2352 116 0 0 chr9 85728414 85728724 -56542720 + AluSg SINE Alu 1 310 0 668 261 15 65 chr9 85728851 85729050 -56542394 + MIR SINE MIR 40 228 -34 501 333 19 0 chr9 85730006 85730168 -56541276 - MIR SINE MIR -76 186 22 314 219 24 24 chr9 85730193 85730275 -56541169 + MER96 DNA MER1_type? 3 84 -91 341 267 136 38 chr9 85731500 85731867 -56539577 + LTR33 LTR ERVL 111 513 -8 799 184 5 102 chr9 85731958 85732072 -56539372 - Tigger2 DNA MER2_type -1 2717 2628 2250 122 0 0 chr9 85732072 85732384 -56539060 - AluSx SINE Alu 0 312 1 799 184 5 102 chr9 85732384 85732465 -56538979 - Tigger2 DNA MER2_type -90 2628 2541 * 1265 155 5 0 chr9 85732439 85732646 -56538798 - Tigger2 DNA MER2_type -2510 208 1 208 216 0 68 chr9 85733013 85733087 -56538357 + T-rich Low_complexity Low_complexity 2 70 0 201 39 0 0 chr9 85733235 85733261 -56538183 + (CA)n Simple_repeat Simple_repeat 2 27 0 332 77 19 0 chr9 85733712 85733764 -56537680 + (GA)n Simple_repeat Simple_repeat 2 54 0 836 289 73 38 chr9 85734368 85734793 -56536651 - LTR16B LTR ERVL -13 451 12 187 171 29 0 chr9 85735405 85735440 -56536004 - MIR SINE MIR -6 256 221 604 251 65 20 chr9 85735504 85735703 -56535741 - Charlie8 DNA MER1_type -2161 256 49 693 258 112 37 chr9 85735802 85736070 -56535374 - LTR16A1 LTR ERVL 0 457 170 235 234 65 75 chr9 85737380 85737487 -56533957 + MIR3 SINE MIR 60 165 -43 1242 250 101 26 chr9 85738020 85738436 -56533008 - MLT1C LTR MaLR -15 452 6 356 253 147 47 chr9 85738469 85738659 -56532785 + MIR SINE MIR 6 214 -48 309 270 90 0 chr9 85739213 85739324 -56532120 - L2 LINE L2 0 3313 3193 755 237 42 33 chr9 85739331 85739546 -56531898 - Charlie8 DNA MER1_type -2200 217 1 496 247 84 88 chr9 85740689 85740890 -56530554 - MER102b DNA MER1_type -1087 341 141 2199 128 0 3 chr9 85740890 85741203 -56530241 - AluSx SINE Alu 0 312 1 496 247 84 88 chr9 85741203 85741262 -56530182 - MER102b DNA MER1_type -1287 141 80 221 0 35 0 chr9 85741262 85741291 -56530153 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 496 247 84 88 chr9 85741291 85741337 -56530107 - MER102b DNA MER1_type -1348 80 35 378 173 0 0 chr9 85742393 85742468 -56528976 + (TG)n Simple_repeat Simple_repeat 1 75 0 783 317 74 10 chr9 85742835 85743239 -56528205 - L1ME4a LINE L1 -201 5920 5491 851 289 18 5 chr9 85743414 85743632 -56527812 - MIR SINE MIR -22 240 20 229 155 35 17 chr9 85744341 85744399 -56527045 - L2 LINE L2 -220 3052 2994 218 308 287 7 chr9 85744936 85744997 -56526447 + MER5A DNA MER1_type 7 50 -139 243 0 0 0 chr9 85744997 85745024 -56526420 + (TGG)n Simple_repeat Simple_repeat 1 27 0 218 308 287 7 chr9 85745024 85745105 -56526339 + MER5A DNA MER1_type 50 189 0 740 258 0 11 chr9 85745113 85745291 -56526153 + MER5B DNA MER1_type 2 177 -1 415 121 0 36 chr9 85745339 85745422 -56526022 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 2800 26 0 0 chr9 85745598 85745905 -56525539 + AluY SINE Alu 1 307 -4 245 228 7 183 chr9 85746193 85746246 -56525198 + MIR SINE MIR 29 42 -166 1980 101 0 14 chr9 85746246 85746523 -56524921 - AluSc SINE Alu 0 309 37 245 228 7 183 chr9 85746523 85746615 -56524829 + MIR SINE MIR 42 149 -59 183 80 0 0 chr9 85746995 85747020 -56524424 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 390 179 19 9 chr9 85747039 85747145 -56524299 + GA-rich Low_complexity Low_complexity 3 109 0 551 195 138 0 chr9 85747310 85747433 -56524011 + MER5B DNA MER1_type 33 172 -6 745 145 126 0 chr9 85747659 85747818 -56523626 + MER53 DNA DNA 2 180 -9 773 218 67 0 chr9 85748258 85748423 -56523021 + MER45A DNA AcHobo 1 176 -2 303 49 0 0 chr9 85749021 85749062 -56522382 + (CAA)n Simple_repeat Simple_repeat 2 42 0 758 263 115 32 chr9 85750117 85750429 -56521015 - MER46C DNA MER2_type 0 338 1 470 56 0 14 chr9 85750437 85750508 -56520936 + (TATAA)n Simple_repeat Simple_repeat 1 70 0 338 242 0 0 chr9 85750532 85750598 -56520846 + L2 LINE L2 3246 3311 -2 398 276 40 59 chr9 85750664 85750816 -56520628 - MIR SINE MIR -77 185 37 661 280 86 26 chr9 85750816 85751048 -56520396 + MIR SINE MIR 11 256 -6 476 290 46 27 chr9 85751251 85751510 -56519934 + L1M4 LINE L1 3923 4186 -1960 355 127 63 0 chr9 85752040 85752103 -56519341 + L1ME4a LINE L1 6021 6087 -34 237 292 14 14 chr9 85752852 85752924 -56518520 + L2 LINE L2 3197 3268 -4 186 270 0 0 chr9 85753486 85753549 -56517895 + CT-rich Low_complexity Low_complexity 2 64 0 213 39 0 0 chr9 85753765 85753791 -56517653 + (T)n Simple_repeat Simple_repeat 1 26 0 1973 274 119 47 chr9 85753862 85755003 -56516441 + L2 LINE L2 1394 2617 -697 619 269 172 44 chr9 85755021 85755382 -56516062 + L2 LINE L2 2907 3313 0 241 315 98 49 chr9 85756509 85756652 -56514792 + MIR SINE MIR 65 214 -48 346 336 32 65 chr9 85757206 85757423 -56514021 - L2 LINE L2 -44 3228 3019 192 333 114 34 chr9 85757523 85757787 -56513657 - L2 LINE L2 -459 2855 2571 266 119 0 0 chr9 85758105 85758147 -56513297 + L1M2 LINE L1 5405 5446 -854 408 20 0 0 chr9 85758148 85758197 -56513247 + (CA)n Simple_repeat Simple_repeat 1 49 0 348 75 15 45 chr9 85758339 85758406 -56513038 + L1PB2 LINE L1 6087 6151 0 2469 92 11 11 chr9 85758406 85758753 -56512691 + L1PB2 LINE L1 5440 5786 -365 306 0 0 0 chr9 85758753 85758787 -56512657 + (CA)n Simple_repeat Simple_repeat 2 35 0 2495 121 3 24 chr9 85759057 85759436 -56512008 + L1PB2 LINE L1 5781 6151 0 587 276 61 49 chr9 85760858 85761229 -56510215 - MLT1K LTR MaLR -46 542 151 1105 195 118 50 chr9 85761369 85761784 -56509660 - MLT1B LTR MaLR 0 390 7 469 323 50 47 chr9 85762068 85762409 -56509035 + MARNA DNA Mariner 149 490 -96 487 277 48 52 chr9 85762641 85762890 -56508554 - MLT1I LTR MaLR -61 348 101 411 332 115 24 chr9 85763044 85763252 -56508192 - L2 LINE L2 0 3272 3046 181 347 0 0 chr9 85763370 85763419 -56508025 - L2 LINE L2 -15 3257 3209 372 311 0 33 chr9 85763764 85763886 -56507558 + L2 LINE L2 3155 3272 0 875 140 121 63 chr9 85764511 85764718 -56506726 - MER20 DNA MER1_type 0 219 1 195 256 0 0 chr9 85766446 85766485 -56504959 + L2 LINE L2 3215 3253 -19 * 199 219 0 0 chr9 85766457 85766498 -56504946 + MIR SINE MIR 222 262 0 412 317 54 16 chr9 85766720 85766906 -56504538 - MIR3 SINE MIR -13 195 3 261 253 241 0 chr9 85767107 85767186 -56504258 - L2 LINE L2 -2 3311 3214 2211 110 27 3 chr9 85767304 85767604 -56503840 + AluSc SINE Alu 3 309 0 1147 269 21 0 chr9 85767650 85767932 -56503512 + LTR16C LTR ERVL 191 478 -13 643 294 106 30 chr9 85767938 85768167 -56503277 - L2 LINE L2 -91 3222 3012 2507 87 0 0 chr9 85768167 85768477 -56502967 + AluSx SINE Alu 1 310 -2 643 294 106 30 chr9 85768477 85768818 -56502626 - L2 LINE L2 -301 3012 2587 267 309 25 0 chr9 85769186 85769267 -56502177 + LTR16C LTR ERVL 206 288 -203 763 235 82 55 chr9 85769315 85769570 -56501874 - MLT1J1 LTR MaLR -169 277 16 375 323 78 50 chr9 85771423 85771822 -56499622 + L2 LINE L2 2323 2732 -582 214 264 66 22 chr9 85772414 85772505 -56498939 + MIR SINE MIR 56 150 -112 516 266 54 54 chr9 85772844 85773085 -56498359 + L1ME LINE L1 5522 5762 -359 180 77 0 0 chr9 85774197 85774223 -56497221 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 402 21 0 0 chr9 85774390 85774437 -56497007 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2693 212 9 9 chr9 85776089 85776645 -56494799 - MER74A LTR ERVL -2 556 1 1464 91 20 0 chr9 85777811 85778009 -56493435 + L1PB1 LINE L1 5948 6149 -2 2295 121 0 0 chr9 85778234 85778541 -56492903 - AluSg SINE Alu -3 307 1 196 281 0 35 chr9 85779877 85779934 -56491510 - MIR SINE MIR -64 144 90 3728 142 84 5 chr9 85780090 85780709 -56490735 + L1MB8 LINE L1 5505 6172 -6 215 231 0 39 chr9 85783143 85783195 -56488249 + L2 LINE L2 3181 3230 -83 325 292 11 0 chr9 85783601 85783690 -56487754 - L1MC4 LINE L1 -1339 6703 6614 206 197 33 0 chr9 85783692 85783753 -56487691 + (TATATG)n Simple_repeat Simple_repeat 5 67 0 226 186 0 0 chr9 85783777 85783820 -56487624 + LTR66 LTR ERVL 393 435 -175 306 0 0 0 chr9 85783834 85783868 -56487576 + (TA)n Simple_repeat Simple_repeat 1 34 0 1404 170 7 63 chr9 85783871 85784141 -56487303 - AluJo SINE Alu -44 268 14 295 295 11 0 chr9 85784771 85784866 -56486578 - Charlie8 DNA MER1_type -2229 188 93 246 213 0 0 chr9 85786199 85786246 -56485198 + (TG)n Simple_repeat Simple_repeat 2 48 0 317 312 0 0 chr9 85788309 85788386 -56483058 + MER81 DNA DNA 33 109 -5 380 278 63 0 chr9 85788491 85788617 -56482827 - L1ME4a LINE L1 -18 6103 5970 986 231 49 82 chr9 85791588 85791856 -56479588 - MER96B DNA MER1_type -3 414 164 2340 95 0 0 chr9 85791856 85792152 -56479292 + AluSc SINE Alu 1 296 -13 986 231 49 82 chr9 85792152 85792308 -56479136 - MER96B DNA MER1_type -253 164 4 384 139 0 0 chr9 85792639 85792718 -56478726 + (GA)n Simple_repeat Simple_repeat 2 80 0 233 208 21 0 chr9 85793073 85793121 -56478323 - MIR SINE MIR -111 151 103 263 282 0 14 chr9 85795010 85795081 -56476363 + L2 LINE L2 3243 3312 -1 560 306 33 11 chr9 85795446 85795629 -56475815 - MIR SINE MIR -58 204 18 219 186 0 0 chr9 85796200 85796243 -56475201 + (TG)n Simple_repeat Simple_repeat 1 43 0 2072 115 20 13 chr9 85796264 85796569 -56474875 - AluSq SINE Alu -6 307 1 329 370 15 7 chr9 85796579 85796714 -56474730 + MER5A DNA MER1_type 54 189 0 2341 74 3 20 chr9 85799248 85799547 -56471897 + AluSg SINE Alu 1 294 -16 256 268 0 118 chr9 85801790 85801863 -56469581 - MIR SINE MIR -122 140 87 2181 71 0 14 chr9 85801863 85802144 -56469300 + AluSc SINE Alu 33 309 0 256 268 0 118 chr9 85802144 85802197 -56469247 - MIR SINE MIR -175 87 29 2881 7 0 0 chr9 85802485 85802792 -56468652 - AluY SINE Alu -4 307 1 1964 167 0 0 chr9 85802904 85803215 -56468229 - AluSx SINE Alu -1 311 1 312 278 21 21 chr9 85803366 85803463 -56467981 + MIR SINE MIR 47 143 -65 321 185 50 2 chr9 85804466 85804554 -56466890 - MLT1G1 LTR MaLR -4 588 450 266 300 70 10 chr9 85804795 85804895 -56466549 - MLT1F LTR MaLR -417 125 20 2273 104 0 3 chr9 85806141 85806438 -56465006 + AluSq SINE Alu 1 296 -17 335 169 14 0 chr9 85806446 85806517 -56464927 + CT-rich Low_complexity Low_complexity 2 73 0 1055 214 18 70 chr9 85806533 85806849 -56464595 - L1ME2 LINE L1 -16 6148 5856 197 172 52 52 chr9 85809726 85809784 -56461660 - L2 LINE L2 0 3272 3215 * 433 268 0 10 chr9 85809782 85809879 -56461565 + L2 LINE L2 3193 3288 -25 258 293 33 80 chr9 85810527 85810643 -56460801 - MIR SINE MIR -117 145 36 2165 122 0 0 chr9 85810643 85810937 -56460507 - AluSc SINE Alu -15 294 1 258 293 33 80 chr9 85810937 85810970 -56460474 - MIR SINE MIR -226 36 3 257 27 54 0 chr9 85811982 85812019 -56459425 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 190 341 31 54 chr9 85812068 85812197 -56459247 - MIR SINE MIR -62 146 21 1991 100 41 0 chr9 85812214 85812485 -56458959 - AluSx SINE Alu -12 300 19 254 348 113 0 chr9 85813698 85813839 -56457605 - MIR3 SINE MIR -15 193 37 1991 113 0 41 chr9 85814672 85815034 -56456410 - AluSc SINE Alu 0 350 1 2091 131 10 19 chr9 85815417 85815731 -56455713 + AluSx SINE Alu 1 311 -1 183 139 0 0 chr9 85816052 85816088 -56455356 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 380 331 54 10 chr9 85816254 85816449 -56454995 + MIR SINE MIR 16 220 -42 26 0 0 0 chr9 85816596 85816622 -56454822 + AT_rich Low_complexity Low_complexity 1 26 0 298 210 32 0 chr9 85816654 85816716 -56454728 - MER3 DNA MER1_type -136 73 10 416 171 0 11 chr9 85817161 85817249 -56454195 + CT-rich Low_complexity Low_complexity 2 88 0 279 0 0 0 chr9 85818778 85818809 -56452635 + (TG)n Simple_repeat Simple_repeat 1 31 0 265 335 137 31 chr9 85819288 85819962 -56451482 - L2 LINE L2 -725 2589 1845 207 0 0 0 chr9 85821591 85821614 -56449830 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 278 109 0 0 chr9 85821870 85821916 -56449528 + L1ME4a LINE L1 6075 6120 -1 337 241 54 45 chr9 85822103 85822215 -56449229 - L2 LINE L2 -3 3269 3157 5343 175 42 36 chr9 85822354 85823693 -56447751 - L1MD1 LINE L1 -1 6635 5282 1522 210 67 54 chr9 85823693 85824154 -56447290 - MLT1C LTR MaLR 0 467 1 5343 175 42 36 chr9 85824154 85824614 -56446830 - L1MD1 LINE L1 -1354 5282 4826 5216 204 48 50 chr9 85824608 85826114 -56445330 - L1MD1 LINE L1 -2302 4238 2730 * 2484 56 10 3 chr9 85826114 85826418 -56445026 - AluY SINE Alu -5 306 1 5216 204 48 50 chr9 85826418 85827363 -56444081 - L1MD1 LINE L1 -3810 2730 1785 207 0 0 0 chr9 85827363 85827386 -56444058 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5216 204 48 50 chr9 85827386 85827662 -56443782 - L1MD1 LINE L1 -4755 1785 1510 180 77 0 0 chr9 85827662 85827688 -56443756 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 5216 204 48 50 chr9 85827688 85828399 -56443045 - L1MD1 LINE L1 -5030 1510 799 2359 133 3 32 chr9 85828399 85828746 -56442698 - MER1B DNA MER1_type 0 337 1 5216 204 48 50 chr9 85828746 85828763 -56442681 - L1MD1 LINE L1 -5741 799 783 2054 176 50 17 chr9 85828763 85829179 -56442265 + MSTB1 LTR MaLR 3 432 0 5216 204 48 50 chr9 85829179 85829258 -56442186 - L1MD1 LINE L1 -5757 783 19 415 276 103 7 chr9 85829905 85830050 -56441394 - MER117 DNA MER1_type -36 161 3 298 361 84 24 chr9 85832297 85832546 -56438898 + L2 LINE L2 2562 2825 -489 371 366 18 19 chr9 85832936 85833131 -56438313 + MIR SINE MIR 21 212 -50 244 292 81 87 chr9 85833283 85833468 -56437976 - MIR SINE MIR -10 252 69 388 301 89 34 chr9 85835256 85835492 -56435952 + HAL1 LINE L1 2246 2494 -13 22 35 0 0 chr9 85835492 85835521 -56435923 + AT_rich Low_complexity Low_complexity 1 29 0 395 200 0 0 chr9 85835583 85835663 -56435781 + MER116 DNA Mariner 1 80 0 457 304 32 46 chr9 85836021 85836238 -56435206 + MIR SINE MIR 35 248 -14 1699 118 72 23 chr9 85837142 85837446 -56433998 + AluSx SINE Alu 6 322 0 952 143 0 34 chr9 85837572 85837809 -56433635 + AluJb SINE Alu 141 372 0 200 279 0 0 chr9 85838674 85838717 -56432727 + polypyrimidine Low_complexity Low_complexity 2 44 0 328 207 18 72 chr9 85839396 85839507 -56431937 - MIR3 SINE MIR -1 207 103 1009 110 6 6 chr9 85839586 85839750 -56431694 + (TTCC)n Simple_repeat Simple_repeat 3 166 0 2244 89 3 7 chr9 85839750 85840034 -56431410 - AluSp SINE Alu -28 285 1 245 315 79 31 chr9 85840909 85841036 -56430408 + L2 LINE L2 3136 3268 -4 317 325 90 32 chr9 85841145 85841333 -56430111 + MIR SINE MIR 56 254 -8 411 300 64 14 chr9 85842085 85842225 -56429219 + MIR3 SINE MIR 33 179 -29 2239 104 7 10 chr9 85843065 85843364 -56428080 - AluSx SINE Alu -14 298 1 264 305 171 23 chr9 85843828 85844225 -56427219 - L2 LINE L2 -2632 682 227 198 287 130 17 chr9 85844507 85844622 -56426822 - L2 LINE L2 -4 3309 3182 2353 89 0 7 chr9 85844627 85844919 -56426525 + AluSg SINE Alu 1 290 -20 207 0 0 0 chr9 85844919 85844942 -56426502 + (GA)n Simple_repeat Simple_repeat 2 24 0 647 303 80 15 chr9 85845650 85845987 -56425457 + L1ME3 LINE L1 5723 6081 -81 301 300 180 7 chr9 85846458 85846608 -56424836 + MIR SINE MIR 25 200 -62 228 290 11 43 chr9 85849414 85849507 -56421937 - MIR3 SINE MIR -3 205 116 481 188 22 51 chr9 85851481 85851620 -56419824 - MIR3 SINE MIR -6 202 65 28 0 0 0 chr9 85852033 85852061 -56419383 + AT_rich Low_complexity Low_complexity 1 28 0 286 203 16 47 chr9 85852134 85852198 -56419246 + L2 LINE L2 3210 3271 -1 2054 158 0 3 chr9 85852273 85852584 -56418860 + AluJb SINE Alu 3 312 0 308 349 0 0 chr9 85852768 85852854 -56418590 - MIR3 SINE MIR -42 166 81 1745 246 45 49 chr9 85853201 85853754 -56417690 - MLT1K LTR MaLR -35 553 3 1226 200 19 46 chr9 85856048 85856373 -56415071 - MER33 DNA MER1_type -7 317 2 216 0 0 0 chr9 85857695 85857719 -56413725 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 342 0 0 0 chr9 85857718 85857756 -56413688 + (CA)n Simple_repeat Simple_repeat 1 38 0 1229 97 0 0 chr9 85857764 85857929 -56413515 - AluY SINE Alu -11 300 136 398 241 12 0 chr9 85859393 85859476 -56411968 + LTR16A LTR ERVL 362 445 -5 234 297 14 0 chr9 85860085 85860159 -56411285 - L2 LINE L2 -213 3059 2985 2247 207 36 11 chr9 85860159 85860459 -56410985 - MLT1D LTR MaLR 0 505 187 2125 141 0 0 chr9 85860459 85860758 -56410686 - AluSx SINE Alu -13 299 1 2247 207 36 11 chr9 85860758 85860926 -56410518 - MLT1D LTR MaLR -318 187 25 236 333 49 28 chr9 85861150 85861294 -56410150 + L2 LINE L2 3112 3258 -14 268 258 16 0 chr9 85861519 85861581 -56409863 + L1MC5 LINE L1 7830 7892 -69 1909 146 7 0 chr9 85862948 85863260 -56408184 - AluSx SINE Alu 0 314 1 215 316 11 32 chr9 85863476 85863571 -56407873 + MIR SINE MIR 23 115 -147 188 280 97 21 chr9 85865392 85865485 -56405959 - L2 LINE L2 -1 3271 3172 333 218 23 35 chr9 85865672 85865759 -56405685 - MIR SINE MIR -174 88 3 25 0 0 0 chr9 85865930 85865955 -56405489 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 85866454 85866475 -56404969 + AT_rich Low_complexity Low_complexity 1 21 0 412 227 62 8 chr9 85866864 85866992 -56404452 - MIR SINE MIR -79 183 49 215 335 72 54 chr9 85867206 85867373 -56404071 - MIR3 SINE MIR -21 187 18 1874 167 46 46 chr9 85869068 85869458 -56401986 - MLT1B LTR MaLR 0 390 1 4763 178 20 9 chr9 85870855 85871763 -56399681 + L1MB7 LINE L1 5256 6169 -15 24 32 0 0 chr9 85872618 85872649 -56398795 + AT_rich Low_complexity Low_complexity 1 31 0 206 118 0 0 chr9 85872774 85872808 -56398636 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 192 163 0 0 chr9 85874018 85874061 -56397383 + (ATTG)n Simple_repeat Simple_repeat 3 45 0 253 286 0 0 chr9 85874320 85874397 -56397047 + L2 LINE L2 3187 3263 -9 199 288 0 61 chr9 85875102 85875168 -56396276 - L2 LINE L2 0 3313 3252 190 338 13 26 chr9 85875272 85875349 -56396095 - L2 LINE L2 -181 3091 3016 240 245 0 0 chr9 85875801 85875854 -56395590 + MER103 DNA DNA 55 107 -59 233 266 94 23 chr9 85876374 85876502 -56394942 - MLT1L LTR MaLR -2 613 477 411 241 58 84 chr9 85876548 85876739 -56394705 - MLT1L LTR MaLR -221 394 209 4366 243 46 9 chr9 85876965 85878173 -56393271 - L1MEc LINE L1 -4894 1502 250 221 203 116 29 chr9 85878518 85878587 -56392857 + L3b LINE CR1 1264 1338 -245 285 360 6 41 chr9 85879739 85879911 -56391533 + MER5B DNA MER1_type 5 170 -8 1995 138 0 3 chr9 85879918 85880223 -56391221 - AluSg SINE Alu 0 304 1 193 291 0 0 chr9 85881609 85881664 -56389780 - MIR SINE MIR -65 143 89 267 288 45 61 chr9 85882080 85882212 -56389232 + MIR SINE MIR 24 153 -55 1142 194 167 11 chr9 85882916 85883299 -56388145 - Charlie4a DNA MER1_type -33 475 31 196 278 159 32 chr9 85934176 85934302 -56337142 + MIR3 SINE MIR 41 182 -26 2109 96 7 0 chr9 85936841 85937112 -56334332 + AluSg SINE Alu 21 293 -17 225 139 0 0 chr9 85937707 85937750 -56333694 + (TAA)n Simple_repeat Simple_repeat 2 44 0 277 188 125 0 chr9 85937869 85937949 -56333495 + L1ME1 LINE L1 5874 5963 -203 507 240 41 3 chr9 85937988 85938123 -56333321 + L1ME1 LINE L1 6035 6177 -1 2235 89 0 4 chr9 85938133 85938461 -56332983 + AluSc SINE Alu 1 327 0 1173 247 42 58 chr9 85938678 85939058 -56332386 - MLT1A2 LTR MaLR 0 374 1 216 306 65 24 chr9 85941746 85941870 -56329574 + MIR SINE MIR 81 209 -53 26 0 0 0 chr9 85942021 85942047 -56329397 + GC_rich Low_complexity Low_complexity 1 26 0 304 190 138 52 chr9 85942742 85942858 -56328586 - MLT1J LTR MaLR -2 509 384 241 276 0 0 chr9 85943047 85943105 -56328339 + L2 LINE L2 2737 2794 -520 226 354 0 0 chr9 85943237 85943316 -56328128 + L2 LINE L2 2957 3035 -237 995 274 63 46 chr9 85944446 85944877 -56326567 - L2 LINE L2 0 3313 2876 538 170 19 25 chr9 85946380 85946539 -56324905 + CT-rich Low_complexity Low_complexity 4 161 0 1037 320 20 7 chr9 85946579 85947026 -56324418 + L2 LINE L2 2434 2886 -428 289 235 193 30 chr9 85947054 85947220 -56324224 + L2 LINE L2 3120 3312 -1 257 257 10 50 chr9 85953547 85953648 -56317796 + CT-rich Low_complexity Low_complexity 3 99 0 221 224 0 20 chr9 85955566 85955615 -56315829 + (TA)n Simple_repeat Simple_repeat 2 49 0 307 350 14 21 chr9 85956389 85956529 -56314915 - MIR SINE MIR -112 150 12 210 299 21 10 chr9 85956811 85956908 -56314536 + (TATG)n Simple_repeat Simple_repeat 2 99 0 267 54 0 0 chr9 85957975 85958012 -56313432 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 26 0 0 0 chr9 85958050 85958076 -56313368 + AT_rich Low_complexity Low_complexity 1 26 0 850 181 7 0 chr9 85959076 85959220 -56312224 - FAM SINE Alu -12 173 29 497 219 0 0 chr9 85959211 85959307 -56312137 - AluYb8 SINE Alu -106 212 117 * 1112 189 11 0 chr9 85959461 85959651 -56311793 + MER3 DNA MER1_type 18 209 0 578 211 90 26 chr9 85960537 85960582 -56310862 - MIR SINE MIR -6 256 215 1024 198 82 158 chr9 85960582 85960939 -56310505 - MLT1D LTR MaLR 0 505 202 2215 100 7 0 chr9 85960939 85961228 -56310216 - AluSc SINE Alu -2 307 17 1024 198 82 158 chr9 85961228 85961416 -56310028 - MLT1D LTR MaLR -303 202 1 578 211 90 26 chr9 85961416 85961526 -56309918 - MIR SINE MIR -47 215 91 212 224 209 0 chr9 85961556 85961623 -56309821 - MIR SINE MIR -21 241 161 423 132 66 13 chr9 85961994 85962070 -56309374 + MADE1 DNA Mariner 1 80 0 2152 130 0 3 chr9 85963379 85963679 -56307765 - AluSg SINE Alu -11 299 1 2708 259 67 22 chr9 85963691 85964631 -56306813 - HAL1 LINE L1 -359 2148 1167 244 343 79 29 chr9 85964669 85964809 -56306635 + L2 LINE L2 2722 2868 -446 296 335 66 31 chr9 85965054 85965311 -56306133 - L1MEc LINE L1 -4720 1780 1399 278 311 90 39 chr9 85965372 85965684 -56305760 - L1MEc LINE L1 -4935 1437 1110 1018 234 81 69 chr9 85965786 85966233 -56305211 + MLT1D LTR MaLR 1 504 -1 4924 170 12 22 chr9 85966549 85967350 -56304094 - MER54B LTR ERVL 0 793 1 390 312 47 29 chr9 85967789 85967959 -56303485 + MER5B DNA MER1_type 6 178 0 334 262 159 14 chr9 85968704 85968849 -56302595 + L2 LINE L2 3148 3313 0 223 281 0 18 chr9 85968964 85969021 -56302423 + MIR SINE MIR 84 139 -69 2139 111 3 3 chr9 85969387 85969676 -56301768 + AluSp SINE Alu 1 289 -24 225 0 0 0 chr9 85969679 85969704 -56301740 + (TTA)n Simple_repeat Simple_repeat 2 26 0 308 301 62 57 chr9 85969987 85970196 -56301248 - L3 LINE CR1 -107 1470 1261 2179 125 0 28 chr9 85970412 85970733 -56300711 - AluSx SINE Alu 0 312 1 315 323 62 12 chr9 85972108 85972269 -56299175 - MIR3 SINE MIR -7 201 33 350 276 116 48 chr9 85976108 85976328 -56295116 + MIR SINE MIR 5 237 -25 214 294 62 34 chr9 85976449 85976595 -56294849 + MIR SINE MIR 89 238 -24 1388 306 30 9 chr9 85976606 85977038 -56294406 - LTR16A LTR ERVL -9 441 1 270 167 0 0 chr9 85977264 85977324 -56294120 + T-rich Low_complexity Low_complexity 1 60 0 1773 139 7 21 chr9 85977357 85977644 -56293800 - AluSx SINE Alu -29 283 1 1414 175 4 4 chr9 85977870 85978110 -56293334 + MLT1E-int LTR MaLR 1348 1587 -148 480 92 0 0 chr9 85978110 85978175 -56293269 + MSTD LTR MaLR 332 396 0 1038 144 99 0 chr9 85978269 85978471 -56292973 - L1MC2 LINE L1 0 6344 6123 5719 175 92 11 chr9 85978472 85979621 -56291823 - L1MC3 LINE L1 -205 7580 6339 24 0 0 0 chr9 85979630 85979654 -56291790 + AT_rich Low_complexity Low_complexity 1 24 0 379 91 0 0 chr9 85979654 85979709 -56291735 - L1PB3 LINE L1 -1 6153 6099 479 195 0 0 chr9 85979717 85979804 -56291640 - L1PB3 LINE L1 -104 6050 5964 437 195 0 0 chr9 85979802 85979884 -56291560 - L1MC3 LINE L1 -1432 6353 6272 * 579 210 68 58 chr9 85979885 85980074 -56291370 + LTR41 LTR ERVL 37 254 -541 5386 221 56 35 chr9 85980127 85981503 -56289941 + MER45R DNA AcHobo 1 1405 -176 1913 130 53 0 chr9 85981632 85981917 -56289527 - AluSq SINE Alu -13 300 1 403 260 150 16 chr9 85982081 85982208 -56289236 + MLT1E LTR MaLR 5 148 -445 2181 107 27 7 chr9 85982224 85982524 -56288920 - AluSq SINE Alu -7 306 1 2292 114 0 0 chr9 85983090 85983388 -56288056 - AluSq SINE Alu -15 298 1 903 286 73 38 chr9 85983610 85984009 -56287435 - LTR16A LTR ERVL -37 413 1 2505 68 0 3 chr9 85984292 85984603 -56286841 - AluY SINE Alu -1 310 1 319 197 243 16 chr9 85986219 85986366 -56285078 + MIR SINE MIR 21 192 -55 322 234 13 26 chr9 85986439 85986516 -56284928 + L2 LINE L2 3236 3311 -2 347 246 50 98 chr9 85986661 85987088 -56284356 + L1ME3 LINE L1 5541 5948 -214 33 0 0 0 chr9 85987300 85987333 -56284111 + AT_rich Low_complexity Low_complexity 1 33 0 439 343 35 24 chr9 85987373 85987542 -56283902 - MIR3 SINE MIR -23 185 15 281 155 17 0 chr9 85990062 85990120 -56281324 + GA-rich Low_complexity Low_complexity 1 59 0 1594 178 0 44 chr9 85990462 85990755 -56280689 + AluJo SINE Alu 1 280 -32 234 0 0 0 chr9 85990776 85990802 -56280642 + (TAA)n Simple_repeat Simple_repeat 2 27 0 994 256 65 36 chr9 85991431 85991907 -56279537 - MER113 DNA MER1_type? -31 490 1 180 269 45 60 chr9 85992496 85992563 -56278881 + MIR SINE MIR 20 85 -177 2801 170 59 2 chr9 85993819 85994278 -56277166 + MER66B LTR ERV1 2 486 0 474 269 16 40 chr9 85994614 85994857 -56276587 - MER41B LTR ERV1 -205 430 54 185 267 22 0 chr9 85995111 85995156 -56276288 - MIR SINE MIR -55 153 108 * 250 260 45 91 chr9 85995152 85995306 -56276138 - L2 LINE L2 -15 3298 3152 540 301 247 29 chr9 85996139 85996188 -56275256 - L2 LINE L2 -337 2977 2940 2251 108 0 16 chr9 85996188 85996503 -56274941 + AluSp SINE Alu 1 310 -3 540 301 247 29 chr9 85996503 85996972 -56274472 - L2 LINE L2 -374 2940 2346 643 235 119 67 chr9 85997677 85998098 -56273346 - LTR37B LTR ERV1 -5 463 21 2794 155 9 2 chr9 85998260 85998692 -56272752 + MER4D LTR ERV1 1 435 -468 2619 154 29 9 chr9 85998754 85999203 -56272241 + MER4D LTR ERV1 441 898 -5 2082 141 85 20 chr9 86000182 86000523 -56270921 + THE1B LTR MaLR 1 363 -1 12703 88 5 4 chr9 86000524 86002102 -56269342 + THE1B-int LTR MaLR 1 1580 0 2053 138 83 37 chr9 86002102 86002450 -56268994 + THE1B LTR MaLR 1 364 0 2546 176 19 12 chr9 86002488 86002909 -56268535 - MSTB LTR MaLR -2 424 1 1506 221 63 41 chr9 86003145 86003588 -56267856 + MLT1D LTR MaLR 1 453 -52 34240 33 18 1 chr9 86003592 86009599 -56261845 - L1PA3 LINE L1 -8 6147 12 341 145 0 14 chr9 86009601 86009670 -56261774 + MLT1D LTR MaLR 430 497 -8 249 281 31 162 chr9 86009854 86010082 -56261362 - L2 LINE L2 -48 3224 3027 504 306 57 34 chr9 86010240 86010449 -56260995 - MIR SINE MIR -36 226 13 409 278 30 35 chr9 86010916 86011030 -56260414 + MIR SINE MIR 48 161 -101 2268 198 106 40 chr9 86011030 86011651 -56259793 + MLT2F LTR ERVL 1 662 -1 409 278 30 35 chr9 86011651 86011737 -56259707 + MIR SINE MIR 161 246 -16 247 247 80 0 chr9 86011910 86012039 -56259405 + MER91B DNA MER1_type 1 137 -3 362 265 37 15 chr9 86013012 86013148 -56258296 + CT-rich Low_complexity Low_complexity 5 143 0 616 276 85 5 chr9 86013155 86013354 -56258090 + MIR SINE MIR 28 242 -20 274 270 27 0 chr9 86013377 86013451 -56257993 + CT-rich Low_complexity Low_complexity 2 77 0 1360 209 82 9 chr9 86013790 86014130 -56257314 + MLT1A1 LTR MaLR 1 365 0 234 0 0 0 chr9 86014601 86014627 -56256817 + (T)n Simple_repeat Simple_repeat 1 26 0 464 281 25 8 chr9 86015023 86015144 -56256300 - L2 LINE L2 0 3313 3191 906 245 0 5 chr9 86015146 86015338 -56256106 - MER58A DNA MER1_type 0 224 34 2147 135 33 28 chr9 86015359 86015721 -56255723 - THE1B LTR MaLR 0 364 1 2305 151 25 32 chr9 86016393 86016830 -56254614 - Tigger2a DNA MER2_type 0 434 1 516 236 8 47 chr9 86018035 86018162 -56253282 - L2 LINE L2 -1 3312 3191 630 273 68 34 chr9 86018292 86018497 -56252947 - MIR SINE MIR -43 219 8 1615 144 7 35 chr9 86018534 86018819 -56252625 - AluJo SINE Alu -15 297 21 620 333 50 16 chr9 86018934 86019445 -56251999 + L1MC4a LINE L1 5417 5819 -302 522 212 45 99 chr9 86019884 86020106 -56251338 - MER58C DNA MER1_type -5 210 1 1707 41 23 0 chr9 86020314 86020532 -56250912 - L1PA13 LINE L1 -2 6161 5939 245 0 0 0 chr9 86020592 86020621 -56250823 + L1MC1 LINE L1 6288 6316 -17 2396 83 0 3 chr9 86020634 86020936 -56250508 - AluSq SINE Alu -12 301 1 393 207 0 12 chr9 86021816 86021898 -56249546 + MIR3 SINE MIR 125 205 -3 857 306 147 46 chr9 86022096 86022932 -56248512 - L2 LINE L2 -1 3271 2521 2268 119 30 25 chr9 86022932 86023294 -56248150 + THE1B LTR MaLR 1 364 0 857 306 147 46 chr9 86023294 86023945 -56247499 - L2 LINE L2 -751 2521 1572 188 293 0 0 chr9 86024268 86024309 -56247135 + L2 LINE L2 3139 3179 -93 329 243 50 71 chr9 86024552 86024692 -56246752 + MIR SINE MIR 28 164 -98 2297 209 60 27 chr9 86025042 86025644 -56245800 - MER74B LTR ERVL 0 622 1 2222 105 0 3 chr9 86025967 86026262 -56245182 + AluSx SINE Alu 1 294 -18 555 146 10 0 chr9 86026596 86026692 -56244752 + L1MB3 LINE L1 5547 5643 -540 671 126 8 8 chr9 86026698 86026817 -56244627 + L1MB3 LINE L1 5925 6043 -140 2186 117 0 19 chr9 86026880 86027196 -56244248 - AluSx SINE Alu -2 310 1 3630 257 66 52 chr9 86027198 86029843 -56241601 - L1ME LINE L1 -454 5976 3291 859 224 104 71 chr9 86029858 86030374 -56241070 - L1ME LINE L1 -3426 2980 2443 2051 137 3 10 chr9 86030374 86030688 -56240756 - AluSx SINE Alu 0 312 1 859 224 104 71 chr9 86030688 86030720 -56240724 - L1ME LINE L1 -3963 2443 2414 410 285 113 11 chr9 86030864 86031050 -56240394 - L1ME LINE L1 -4131 2456 2252 307 306 46 19 chr9 86031364 86031472 -56239972 - L1ME LINE L1 -4831 1756 1646 2119 96 7 0 chr9 86031496 86031842 -56239602 - AluY SINE Alu 0 348 1 375 307 85 40 chr9 86031886 86032264 -56239180 - L1ME LINE L1 -5042 1367 973 390 297 91 43 chr9 86032427 86032484 -56238960 - HAL1b LINE L1 -168 1180 1127 1897 145 29 0 chr9 86032484 86032692 -56238752 - AluSx SINE Alu 0 339 118 276 30 0 0 chr9 86032692 86032725 -56238719 + (TG)n Simple_repeat Simple_repeat 2 34 0 1897 145 29 0 chr9 86032725 86032847 -56238597 - AluSx SINE Alu -221 118 1 390 297 91 43 chr9 86032847 86033137 -56238307 - HAL1b LINE L1 -221 1127 733 7703 238 85 38 chr9 86033151 86034451 -56236993 - L1MD1 LINE L1 0 6636 5399 2460 11 4 0 chr9 86034451 86034723 -56236721 + AluYa5 SINE Alu 37 309 -2 7703 238 85 38 chr9 86034723 86038044 -56233400 - L1MD1 LINE L1 -1237 5399 2237 2184 121 0 10 chr9 86038044 86038357 -56233087 - AluY SINE Alu -1 310 1 7703 238 85 38 chr9 86038357 86038480 -56232964 - L1MD1 LINE L1 -4399 2237 2121 766 174 15 15 chr9 86038480 86038612 -56232832 + FLAM_A SINE Alu 1 132 -1 7703 238 85 38 chr9 86038612 86039241 -56232203 - L1MD1 LINE L1 -4515 2121 998 283 288 146 67 chr9 86040380 86040620 -56230824 - L1MD1 LINE L1 -6266 274 16 901 185 82 10 chr9 86040803 86040998 -56230446 + MER63A DNA MER1_type 1 209 -1 207 0 0 0 chr9 86041310 86041333 -56230111 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 892 276 97 54 chr9 86041874 86042515 -56228929 + L2 LINE L2 2560 3236 -77 953 174 37 32 chr9 86042515 86042733 -56228711 - L1MB3 LINE L1 -3 6180 5962 892 276 97 54 chr9 86042733 86042815 -56228629 + L2 LINE L2 3236 3313 0 288 257 40 10 chr9 86044020 86044121 -56227323 - Charlie8 DNA MER1_type -2196 221 118 274 169 77 0 chr9 86044153 86044218 -56227226 - MER116 DNA Mariner 0 80 11 1517 215 111 36 chr9 86044218 86044688 -56226756 + MLT1D LTR MaLR 1 505 0 300 149 25 25 chr9 86044723 86044844 -56226600 + (TA)n Simple_repeat Simple_repeat 1 121 0 2918 85 67 7 chr9 86044852 86045287 -56226157 - MER4C LTR ERV1 -3 462 2 206 205 0 0 chr9 86045328 86045367 -56226077 + (TG)n Simple_repeat Simple_repeat 2 40 0 3179 159 25 54 chr9 86045795 86046502 -56224942 - MER54A LTR ERVL 0 901 23 206 276 0 17 chr9 86046941 86046999 -56224445 - MER5C DNA MER1_type -267 57 1 3735 160 25 34 chr9 86047003 86048260 -56223184 - L1MA5 LINE L1 -271 6029 4791 1548 98 4 0 chr9 86048260 86048484 -56222960 + L1MA5 LINE L1 6063 6298 -2 434 309 65 25 chr9 86050146 86050621 -56220823 - HAL1 LINE L1 -1005 1502 1009 1535 201 34 41 chr9 86050666 86051083 -56220361 - MER96B DNA MER1_type -2 415 2 1363 182 127 3 chr9 86051145 86051475 -56219969 + L1MB5 LINE L1 5795 6165 -9 226 277 12 12 chr9 86051480 86051563 -56219881 + L1MC4a LINE L1 2228 2310 -4230 2678 216 60 3 chr9 86051608 86052247 -56219197 - MSTD-int LTR MaLR -1059 676 2 1847 137 29 137 chr9 86052249 86052595 -56218849 - MSTD LTR MaLR 0 396 107 2268 101 3 3 chr9 86052595 86052891 -56218553 - AluSc SINE Alu -13 296 1 1847 137 29 137 chr9 86052891 86052988 -56218456 - MSTD LTR MaLR -289 107 1 1596 227 77 77 chr9 86052988 86053628 -56217816 + L1MD2 LINE L1 5704 6343 -16 1214 318 146 38 chr9 86053641 86054620 -56216824 + L1MC4a LINE L1 2667 3538 -3002 2271 102 3 7 chr9 86054620 86054923 -56216521 + AluSx SINE Alu 1 302 -10 1214 318 146 38 chr9 86054923 86055592 -56215852 + L1MC4a LINE L1 3538 4494 -2046 692 312 74 46 chr9 86055619 86056338 -56215106 + L1MC4a LINE L1 5010 5762 -778 522 252 8 0 chr9 86057194 86057317 -56214127 + L1ME3A LINE L1 5840 5963 -207 641 80 0 11 chr9 86057347 86057435 -56214009 + MER4B LTR ERV1 10 96 -514 2179 139 47 33 chr9 86057447 86057806 -56213638 + THE1B LTR MaLR 1 364 0 563 148 20 30 chr9 86057806 86057889 -56213555 + MER4B LTR ERV1 101 182 -428 2562 148 27 5 chr9 86057879 86058283 -56213161 + MER4E LTR ERV1 367 779 0 547 198 111 35 chr9 86058283 86058455 -56212989 + L1ME3A LINE L1 5985 6169 -1 358 277 50 25 chr9 86058455 86058574 -56212870 + L1MC4a LINE L1 5829 5950 -2252 1995 124 22 68 chr9 86058581 86058981 -56212463 + MER4A LTR ERV1 1 229 -236 427 181 0 0 chr9 86058994 86059066 -56212378 + MER4A LTR ERV1 355 426 -238 2178 73 42 0 chr9 86059087 86059373 -56212071 + AluY SINE Alu 1 298 -13 526 261 43 22 chr9 86059377 86059561 -56211883 + MER4C LTR ERV1 278 465 0 714 256 146 74 chr9 86059595 86059782 -56211662 + L1MC4a LINE L1 6012 6184 -2018 2200 124 0 0 chr9 86059782 86060089 -56211355 + AluSx SINE Alu 1 307 -5 714 256 146 74 chr9 86060089 86060401 -56211043 + L1MC4a LINE L1 6184 6547 -1655 1066 179 11 16 chr9 86061109 86061299 -56210145 - L1PB4 LINE L1 -2 6154 5966 598 237 147 26 chr9 86061565 86061721 -56209723 + MER5A DNA MER1_type 9 183 -6 271 242 101 10 chr9 86062469 86062568 -56208876 - L1ME4a LINE L1 -2 6119 6012 281 305 53 96 chr9 86062863 86063145 -56208299 - L1MC4a LINE L1 -1907 5901 5632 682 276 45 103 chr9 86063318 86063713 -56207731 + MER34 LTR ERV1 1 354 -188 7368 59 7 3 chr9 86063713 86064712 -56206732 + L1PA6 LINE L1 5150 6151 -3 682 276 45 103 chr9 86064712 86064888 -56206556 + MER34 LTR ERV1 354 539 -3 329 256 89 21 chr9 86064906 86065097 -56206347 - L1MC4a LINE L1 -2341 5467 5264 2368 103 0 0 chr9 86065263 86065564 -56205880 + AluSg SINE Alu 1 301 -9 814 142 21 28 chr9 86065843 86065984 -56205460 + FLAM_C SINE Alu 1 140 -3 2279 92 7 3 chr9 86065991 86066285 -56205159 + AluSq SINE Alu 1 295 -18 1544 186 0 0 chr9 86066286 86066539 -56204905 + AluSx SINE Alu 1 253 -59 1733 178 58 53 chr9 86067088 86067259 -56204185 - MSTD LTR MaLR 0 396 227 2432 143 5 22 chr9 86067259 86067629 -56203815 + THE1B LTR MaLR 1 364 0 1733 178 58 53 chr9 86067629 86067851 -56203593 - MSTD LTR MaLR -169 227 1 734 218 81 11 chr9 86068539 86068713 -56202731 + MER5A DNA MER1_type 1 186 -3 203 321 25 0 chr9 86070428 86070509 -56200935 + GA-rich Low_complexity Low_complexity 4 86 0 189 175 0 0 chr9 86070534 86070574 -56200870 + A-rich Low_complexity Low_complexity 1 40 0 2783 209 71 23 chr9 86070965 86071147 -56200297 + MER82 DNA MER2_type 1 173 -480 234 0 0 0 chr9 86071147 86071173 -56200271 + (TG)n Simple_repeat Simple_repeat 1 26 0 2783 209 71 23 chr9 86071173 86071517 -56199927 + MER82 DNA MER2_type 173 564 -89 2241 100 0 13 chr9 86071517 86071828 -56199616 + AluSq SINE Alu 2 308 -5 2783 209 71 23 chr9 86071828 86071916 -56199528 + MER82 DNA MER2_type 564 646 -7 2000 118 0 31 chr9 86072122 86072411 -56199033 - AluSx SINE Alu -32 280 1 189 107 0 0 chr9 86072425 86072453 -56198991 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 363 341 45 0 chr9 86073033 86073209 -56198235 - Charlie8 DNA MER1_type -2131 286 103 297 182 110 123 chr9 86073251 86073405 -56198039 + MLT1J2 LTR MaLR 67 218 -232 659 274 101 21 chr9 86073552 86073789 -56197655 + MLT1J LTR MaLR 1 256 -255 237 309 99 0 chr9 86073858 86073939 -56197505 + MLT1J LTR MaLR 374 462 -49 503 315 99 5 chr9 86074081 86074294 -56197150 + MIR SINE MIR 30 262 0 1888 107 25 18 chr9 86076884 86077184 -56194260 + AluSx SINE Alu 2 303 0 1797 110 0 4 chr9 86077791 86078036 -56193408 + AluSp SINE Alu 60 303 -10 23 0 0 0 chr9 86078338 86078361 -56193083 + AT_rich Low_complexity Low_complexity 1 23 0 189 138 0 0 chr9 86078388 86078417 -56193027 - L2 LINE L2 -378 2894 2866 229 254 17 34 chr9 86078743 86078802 -56192642 - MIR3 SINE MIR -52 156 99 829 259 243 6 chr9 86079116 86079651 -56191793 - L2 LINE L2 0 3313 2650 372 188 0 0 chr9 86079653 86079717 -56191727 + MER77 LTR ERV1 1 64 -541 188 67 33 0 chr9 86079717 86079747 -56191697 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 2141 102 0 3 chr9 86080431 86080750 -56190694 - AluSg SINE Alu 0 318 1 396 284 58 62 chr9 86081108 86081333 -56190111 + MIR SINE MIR 20 243 -19 460 241 10 116 chr9 86084845 86084911 -56186533 - MIR SINE MIR -56 206 135 180 97 0 0 chr9 86084911 86084942 -56186502 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2159 110 0 0 chr9 86084944 86085226 -56186218 - AluSq SINE Alu -29 284 3 460 241 10 116 chr9 86085226 86085363 -56186081 - MIR SINE MIR -128 134 22 233 315 102 9 chr9 86085382 86085490 -56185954 - L2 LINE L2 -1 3312 3195 2219 153 31 98 chr9 86085490 86086011 -56185433 + L1MC1 LINE L1 5267 5759 -585 1384 196 93 61 chr9 86086011 86086440 -56185004 - MSTB2 LTR MaLR 0 457 15 3488 154 16 7 chr9 86086441 86087017 -56184427 + L1MC1 LINE L1 5753 6333 0 199 308 31 15 chr9 86087093 86087158 -56184286 - L2 LINE L2 -210 3062 2997 498 349 0 7 chr9 86087876 86088022 -56183422 + MIR SINE MIR 7 151 -111 552 286 43 14 chr9 86088684 86088894 -56182550 - LTR33 LTR ERVL 0 521 306 363 341 6 24 chr9 86088954 86089124 -56182320 - LTR33 LTR ERVL -354 167 1 198 206 0 0 chr9 86089179 86089213 -56182231 + L2 LINE L2 3264 3297 -16 695 234 53 18 chr9 86090924 86091095 -56180349 - MER5B DNA MER1_type 0 178 2 387 252 22 128 chr9 86091245 86091519 -56179925 - MER112 DNA MER1_type -8 252 8 183 42 0 0 chr9 86092820 86092844 -56178600 + (TTA)n Simple_repeat Simple_repeat 3 26 0 1678 67 43 0 chr9 86092844 86093053 -56178391 - L1PA7 LINE L1 -18 6136 5919 5121 74 3 10 chr9 86093337 86094486 -56176958 - L1PA7 LINE L1 -351 5803 4662 1336 96 0 0 chr9 86094635 86094823 -56176621 - L1P LINE L1 -1297 4849 4662 293 44 67 0 chr9 86096115 86096160 -56175284 + A-rich Low_complexity Low_complexity 2 49 0 2036 269 21 47 chr9 86096504 86097232 -56174212 - L1ME3A LINE L1 -11 6159 5451 8342 11 0 6 chr9 86097291 86098416 -56173028 + L1PA2 LINE L1 5068 6155 0 480 271 46 13 chr9 86098420 86098571 -56172873 - L1ME1 LINE L1 -4 6162 6007 390 177 0 25 chr9 86098786 86098865 -56172579 + MER3 DNA MER1_type 133 209 0 234 227 0 0 chr9 86098828 86098872 -56172572 - MER3 DNA MER1_type -125 84 41 * 223 331 66 33 chr9 86099122 86099273 -56172171 + MIR SINE MIR 15 170 -92 180 219 0 24 chr9 86099271 86099312 -56172132 + L2 LINE L2 3263 3302 -11 * 309 270 184 26 chr9 86099951 86100103 -56171341 - MIR SINE MIR -72 190 15 692 277 36 24 chr9 86100349 86100602 -56170842 - MIR SINE MIR 0 262 7 765 267 53 12 chr9 86102715 86102962 -56168482 - MIR SINE MIR -4 258 2 195 171 0 0 chr9 86103192 86103227 -56168217 + L2 LINE L2 3266 3300 -13 1117 214 89 32 chr9 86103406 86103775 -56167669 + LTR37A LTR ERV1 33 422 -4 2013 181 53 49 chr9 86103903 86104394 -56167050 - L1ME1 LINE L1 -188 5996 5504 1519 202 46 52 chr9 86105645 86106012 -56165432 + MLT1A1 LTR MaLR 1 365 0 405 277 57 25 chr9 86106357 86106516 -56164928 - MIR SINE MIR -96 166 3 281 288 38 98 chr9 86107349 86107533 -56163911 + L2 LINE L2 3139 3311 -2 2055 129 3 0 chr9 86108132 86108469 -56162975 + AluSx SINE Alu 1 312 0 237 245 0 0 chr9 86109094 86109147 -56162297 + MER53 DNA DNA 1 53 -136 1564 220 61 22 chr9 86110804 86111167 -56160277 + REP3 LTR ERV 145 521 -41 248 188 125 0 chr9 86111355 86111419 -56160025 - MLT1I LTR MaLR -23 386 315 723 269 0 0 chr9 86112304 86112453 -56158991 - MER97c DNA MER1_type? -941 149 1 1024 268 85 8 chr9 86112845 86113222 -56158222 - LTR37B LTR ERV1 -62 406 1 905 233 0 6 chr9 86113355 86113535 -56157909 + MER97a DNA MER1_type? 1 179 -715 2549 177 31 9 chr9 86113730 86114187 -56157257 + MLT1C LTR MaLR 1 467 0 2598 46 7 3 chr9 86114305 86114608 -56156836 - AluY SINE Alu -7 304 1 603 315 5 25 chr9 86114643 86114840 -56156604 - MIR SINE MIR -49 213 21 374 247 12 0 chr9 86115551 86115632 -56155812 - L2 LINE L2 -1 3312 3231 535 253 45 78 chr9 86115661 86115728 -56155716 - MIR SINE MIR -12 250 182 2507 86 14 29 chr9 86115728 86115813 -56155631 - L1PA14 LINE L1 -1 6160 6075 2029 116 4 0 chr9 86115813 86116088 -56155356 - AluSx SINE Alu -15 297 22 2507 86 14 29 chr9 86116088 86116353 -56155091 - L1PA14 LINE L1 -86 6075 5815 535 253 45 78 chr9 86116353 86116530 -56154914 - MIR SINE MIR -80 182 14 667 171 51 0 chr9 86116589 86116706 -56154738 + FLAM_A SINE Alu 20 142 0 184 295 16 16 chr9 86116809 86116870 -56154574 - L2 LINE L2 -1 3271 3211 375 269 8 17 chr9 86116965 86117084 -56154360 - LTR33 LTR ERVL -23 498 381 1982 204 167 14 chr9 86117538 86118028 -56153416 - MLT1F1 LTR MaLR 0 567 3 397 259 23 115 chr9 86122026 86122200 -56149244 - MIR3 SINE MIR -1 207 50 559 249 153 13 chr9 86122291 86122520 -56148924 - LTR50 LTR ERVL 0 795 535 2589 53 0 0 chr9 86123051 86123350 -56148094 + AluY SINE Alu 1 299 -12 389 250 0 23 chr9 86123557 86123645 -56147799 + L2 LINE L2 3169 3254 -18 437 331 37 7 chr9 86123773 86123909 -56147535 + MER91A DNA MER1_type 37 176 -20 520 331 177 15 chr9 86124284 86124680 -56146764 - L2 LINE L2 -9 3304 2845 1922 116 4 8 chr9 86124694 86124961 -56146483 + AluSq SINE Alu 29 294 -19 676 298 146 29 chr9 86126269 86126585 -56144859 + MLT1K LTR MaLR 194 546 -42 195 218 0 36 chr9 86126602 86126657 -56144787 + MIR SINE MIR 95 147 -61 1743 124 69 7 chr9 86126889 86127180 -56144264 - L1MA6 LINE L1 -349 5951 5643 2003 151 19 0 chr9 86127180 86127502 -56143942 + L1MA6 LINE L1 5970 6299 -1 3869 12 0 0 chr9 86127612 86128077 -56143367 - L1PA2 LINE L1 -468 5687 5223 4481 4 0 0 chr9 86128077 86128544 -56142900 + L1PA2 LINE L1 5686 6153 -2 1541 227 62 29 chr9 86129528 86129981 -56141463 + Charlie4a DNA MER1_type 39 506 -2 659 265 30 48 chr9 86130295 86130349 -56141095 + MIR SINE MIR 8 61 -201 2164 153 42 31 chr9 86130349 86130408 -56141036 - MLT1B LTR MaLR 0 390 333 1927 122 0 64 chr9 86130408 86130737 -56140707 - AluSq SINE Alu -5 308 1 2164 153 42 31 chr9 86130737 86131063 -56140381 - MLT1B LTR MaLR -57 333 1 659 265 30 48 chr9 86131063 86131238 -56140206 + MIR SINE MIR 61 233 -29 2087 131 3 0 chr9 86131347 86131644 -56139800 - AluSg SINE Alu -12 298 1 541 248 99 108 chr9 86133216 86133529 -56137915 + MLT1F LTR MaLR 1 310 -232 1188 204 36 59 chr9 86133529 86133943 -56137501 - MLT2B1 LTR ERVL -2 518 179 371 154 15 0 chr9 86133948 86134013 -56137431 - MSTA LTR MaLR 0 428 363 2277 103 27 18 chr9 86134111 86134454 -56136990 - THE1C LTR MaLR -28 429 1 836 199 17 11 chr9 86134456 86134632 -56136812 - MLT2D LTR ERVL -237 177 1 346 220 0 0 chr9 86134637 86134696 -56136748 + MLT1F1 LTR MaLR 356 414 -128 1344 198 0 8 chr9 86134782 86135030 -56136414 - AluJb SINE Alu -66 246 1 439 71 0 0 chr9 86135030 86135086 -56136358 - MER53 DNA DNA -133 56 1 579 214 0 55 chr9 86135087 86135232 -56136212 + MLT1F1 LTR MaLR 431 567 0 507 188 10 0 chr9 86135538 86135639 -56135805 - MER5A DNA MER1_type -84 105 4 267 199 125 44 chr9 86136024 86136160 -56135284 - L1ME4a LINE L1 -5 6116 5970 576 291 32 16 chr9 86137227 86137416 -56134028 + MIR SINE MIR 65 256 -6 2160 110 0 0 chr9 86137422 86137703 -56133741 + AluSc SINE Alu 1 281 -28 29 0 0 0 chr9 86137704 86137733 -56133711 + AT_rich Low_complexity Low_complexity 1 29 0 783 214 66 133 chr9 86138115 86138587 -56132857 + MLT1H LTR MaLR 72 511 -38 2434 63 13 7 chr9 86138837 86139138 -56132306 - AluY SINE Alu -8 303 1 2408 116 30 28 chr9 86139952 86140315 -56131129 + THE1B LTR MaLR 1 364 0 273 57 0 0 chr9 86140681 86140716 -56130728 + (CA)n Simple_repeat Simple_repeat 2 36 0 1856 149 0 10 chr9 86141799 86142088 -56129356 + AluJb SINE Alu 10 295 -17 22 0 0 0 chr9 86142094 86142116 -56129328 + AT_rich Low_complexity Low_complexity 1 22 0 583 316 41 17 chr9 86142144 86142555 -56128889 + L1ME4a LINE L1 5670 6090 -31 1510 172 74 15 chr9 86142586 86142911 -56128533 + MER2 DNA MER2_type 1 344 0 241 270 45 34 chr9 86143303 86143392 -56128052 + MIR SINE MIR 19 108 -100 269 353 53 19 chr9 86143394 86143601 -56127843 - L2 LINE L2 -10 3303 3090 254 188 72 0 chr9 86143715 86143784 -56127660 + MIR3 SINE MIR 95 168 -40 1411 190 93 84 chr9 86143966 86144430 -56127014 + LTR37B LTR ERV1 1 468 0 216 185 0 0 chr9 86144654 86144708 -56126736 + (CA)n Simple_repeat Simple_repeat 1 54 0 241 336 107 32 chr9 86144944 86145106 -56126338 - MIR SINE MIR -60 148 3 225 0 0 0 chr9 86145416 86145441 -56126003 + (CA)n Simple_repeat Simple_repeat 1 25 0 336 246 105 117 chr9 86146101 86146776 -56124668 - L2 LINE L2 -84 3229 2565 680 207 62 0 chr9 86148700 86148845 -56122599 + MER103 DNA DNA 13 166 0 308 284 14 14 chr9 86148918 86148992 -56122452 + L2 LINE L2 3173 3246 -26 * 2459 281 74 7 chr9 86148990 86150016 -56121428 + L2 LINE L2 2216 3311 -2 751 263 111 60 chr9 86150304 86150625 -56120819 + Charlie7 DNA MER1_type 57 360 -2252 1643 175 10 102 chr9 86150625 86151037 -56120407 + MLT1A2 LTR MaLR 1 374 0 751 263 111 60 chr9 86151037 86151063 -56120381 + Charlie7 DNA MER1_type 360 383 -2229 2149 119 19 26 chr9 86151063 86151374 -56120070 + AluSx SINE Alu 1 309 -3 751 263 111 60 chr9 86151374 86151511 -56119933 + Charlie7 DNA MER1_type 383 567 -2045 260 233 23 23 chr9 86151511 86151597 -56119847 + L1MC5 LINE L1 7831 7916 -45 479 237 61 15 chr9 86151639 86151770 -56119674 + Charlie7 DNA MER1_type 581 717 -1895 271 276 37 98 chr9 86151750 86151964 -56119480 + Charlie7 DNA MER1_type 2408 2608 -4 * 26 0 0 0 chr9 86152181 86152207 -56119237 + AT_rich Low_complexity Low_complexity 1 26 0 2165 65 7 38 chr9 86152505 86152826 -56118618 - AluY SINE Alu 0 312 1 1886 150 7 3 chr9 86153356 86153643 -56117801 + AluJb SINE Alu 1 288 -24 1177 118 18 99 chr9 86153649 86153734 -56117710 + L1PA15 LINE L1 5950 6040 -125 2180 119 10 3 chr9 86153734 86154045 -56117399 + AluSq SINE Alu 1 313 0 1177 118 18 99 chr9 86154045 86154180 -56117264 + L1PA15 LINE L1 6040 6152 -13 275 0 29 0 chr9 86154184 86154219 -56117225 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 491 300 107 33 chr9 86154522 86154765 -56116679 + MIR SINE MIR 1 261 -1 835 217 18 69 chr9 86154844 86155290 -56116154 - MLT1D LTR MaLR 0 505 6 2115 126 3 0 chr9 86155354 86155648 -56115796 - AluSx SINE Alu -17 295 1 674 270 116 62 chr9 86158683 86158801 -56112643 + LTR16C LTR ERVL 1 111 -380 2029 147 0 10 chr9 86158801 86159100 -56112344 - AluSx SINE Alu -16 296 1 674 270 116 62 chr9 86159100 86159447 -56111997 + LTR16C LTR ERVL 111 491 0 404 268 256 12 chr9 86161729 86161979 -56109465 - MLT1H LTR MaLR 0 549 239 416 263 18 9 chr9 86162283 86162397 -56109047 - MLT1H LTR MaLR -431 118 4 4827 179 10 13 chr9 86162397 86163192 -56108252 + MER54B LTR ERVL 1 793 0 1180 186 13 1 chr9 86163464 86163691 -56107753 - L1PB1 LINE L1 -218 5945 5712 1517 157 0 8 chr9 86163691 86163931 -56107513 + L1PB1 LINE L1 5911 6150 -1 2088 100 0 28 chr9 86163949 86164261 -56107183 + AluSc SINE Alu 1 304 0 889 305 88 16 chr9 86164865 86165249 -56106195 - L2 LINE L2 -1 3312 2901 374 340 65 31 chr9 86166259 86166553 -56104891 + L1ME LINE L1 5520 5823 -298 186 294 0 0 chr9 86167316 86167367 -56104077 + L2 LINE L2 3179 3229 -84 1338 94 0 0 chr9 86168072 86168242 -56103202 - AluSc SINE Alu -14 295 126 438 315 28 22 chr9 86168256 86168437 -56103007 + MIR SINE MIR 81 262 0 1806 177 39 30 chr9 86171375 86171737 -56099707 - MLT1A1 LTR MaLR 0 365 1 1219 308 90 21 chr9 86172092 86173363 -56098081 + L1ME3A LINE L1 1275 2855 -4267 1833 263 52 20 chr9 86173391 86174030 -56097414 + L1ME3A LINE L1 4451 5109 -1832 2620 253 38 14 chr9 86174091 86174821 -56096623 + L1ME3A LINE L1 6213 6960 -5 351 320 118 6 chr9 86175188 86175366 -56096078 + MIR SINE MIR 8 205 -57 1225 98 0 0 chr9 86175394 86175558 -56095886 + AluSp SINE Alu 146 309 -4 271 250 100 50 chr9 86176847 86176967 -56094477 - L2 LINE L2 -42 3271 3146 2132 119 10 3 chr9 86177793 86178087 -56093357 + AluSp SINE Alu 1 296 -17 437 271 23 43 chr9 86179405 86179613 -56091831 - MIR SINE MIR -41 221 15 194 140 0 40 chr9 86180072 86180122 -56091322 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 573 88 0 0 chr9 86180761 86180841 -56090603 + (TG)n Simple_repeat Simple_repeat 2 81 0 3247 161 50 29 chr9 86181550 86182303 -56089141 - LTR1B LTR ERV1 -2 783 1 288 214 155 89 chr9 86182777 86182945 -56088499 + MLT1K LTR MaLR 374 552 -36 261 176 71 0 chr9 86183358 86183443 -56088001 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 313 165 21 0 chr9 86183662 86183759 -56087685 + (TA)n Simple_repeat Simple_repeat 1 99 0 541 271 63 41 chr9 86184009 86184230 -56087214 - L2 LINE L2 -7 3306 3081 17034 88 10 0 chr9 86184462 86187495 -56083949 - L1PA7 LINE L1 0 6469 3437 14646 111 8 28 chr9 86187600 86190812 -56080632 - L1PA7 LINE L1 -3246 3215 1 230 260 13 52 chr9 86191625 86191702 -56079742 - MIR SINE MIR -70 192 119 1700 176 0 46 chr9 86192028 86192388 -56079056 - AluJb SINE Alu 0 348 4 316 265 25 58 chr9 86193045 86193170 -56078274 - MIR SINE MIR -82 126 5 208 313 45 0 chr9 86193752 86193819 -56077625 - L2 LINE L2 -47 3266 3197 2094 72 0 15 chr9 86194010 86194273 -56077171 + AluY SINE Alu 40 298 -13 369 317 28 14 chr9 86195342 86195487 -56075957 + MIR SINE MIR 5 151 -111 1041 145 3 1 chr9 86196705 86197396 -56074048 + (CAGT)n Simple_repeat Simple_repeat 1 692 0 420 104 0 0 chr9 86197416 86197483 -56073961 + (CAGT)n Simple_repeat Simple_repeat 2 68 0 698 94 10 0 chr9 86197545 86197641 -56073803 + MLT1A1 LTR MaLR 269 365 0 445 207 22 8 chr9 86197943 86198041 -56073403 + L1MC4a LINE L1 5657 5750 -411 472 274 38 52 chr9 86198757 86198969 -56072475 + L1MC4a LINE L1 5729 5937 -1871 4042 145 47 4 chr9 86199370 86200052 -56071392 - MER50 LTR ERV1 -23 711 1 441 258 102 51 chr9 86200707 86200963 -56070481 + Charlie8 DNA MER1_type 1 269 -2148 336 256 67 58 chr9 86200963 86201106 -56070338 - MLT1G LTR MaLR 0 555 408 634 235 178 38 chr9 86201144 86201408 -56070036 - MLT1G LTR MaLR -264 326 26 357 340 53 0 chr9 86201711 86201861 -56069583 - MIR SINE MIR -57 205 48 320 324 216 0 chr9 86202608 86202784 -56068660 - MIR SINE MIR 0 262 49 1159 118 0 0 chr9 86202812 86202981 -56068463 - AluSg/x SINE Alu -1 311 143 1720 65 5 9 chr9 86202986 86203200 -56068244 - AluY SINE Alu -12 299 87 2316 108 6 3 chr9 86203304 86203646 -56067798 + pTR5 LTR ERV1 50 392 -2046 967 269 17 55 chr9 86203690 86204051 -56067393 + L1MC4a LINE L1 5592 5938 -1870 635 230 20 56 chr9 86204146 86204342 -56067102 + L2 LINE L2 3117 3305 -8 1111 238 162 28 chr9 86205356 86205789 -56065655 + LTR16C LTR ERVL 1 491 0 1858 167 13 7 chr9 86206845 86207145 -56064299 - AluJo SINE Alu -8 304 3 2111 107 11 0 chr9 86208323 86208604 -56062840 + AluSx SINE Alu 1 284 -28 1237 121 17 0 chr9 86208431 86208604 -56062840 + AluSg/x SINE Alu 107 333 0 460 0 0 0 chr9 86208604 86208655 -56062789 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1970 151 0 78 chr9 86208744 86209116 -56062328 + MER2 DNA MER2_type 2 344 0 255 273 158 22 chr9 86209651 86209790 -56061654 + MIR SINE MIR 57 214 -48 240 35 0 0 chr9 86209848 86209877 -56061567 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 645 322 108 16 chr9 86209880 86210250 -56061194 + L3 LINE CR1 895 1298 -279 408 331 48 0 chr9 86210272 86210396 -56061048 + MIR SINE MIR 21 150 -58 225 0 0 0 chr9 86210466 86210491 -56060953 + (CA)n Simple_repeat Simple_repeat 2 26 0 402 229 150 20 chr9 86210503 86210656 -56060788 + MER112 DNA MER1_type 79 251 -9 1044 101 0 0 chr9 86210905 86211071 -56060373 + AluY SINE Alu 145 310 0 184 359 92 54 chr9 86211758 86211942 -56059502 - L2 LINE L2 -4 3268 3078 1356 293 56 37 chr9 86212795 86213277 -56058167 - LTR16C LTR ERVL 0 491 1 2235 119 6 0 chr9 86213314 86213625 -56057819 - AluSp SINE Alu 0 313 1 442 229 2 68 chr9 86215154 86215301 -56056143 - MIR SINE MIR -62 146 41 232 234 35 83 chr9 86215506 86215563 -56055881 - L1ME4a LINE L1 -5 6116 6058 2225 122 3 6 chr9 86215563 86215875 -56055569 + AluSx SINE Alu 1 311 -1 232 234 35 83 chr9 86215875 86215962 -56055482 - L1ME4a LINE L1 -63 6058 5979 777 276 223 15 chr9 86215990 86216605 -56054839 + L1M4 LINE L1 3658 4400 -1746 794 199 127 0 chr9 86217932 86218098 -56053346 + MER5A DNA MER1_type 2 188 -1 464 297 8 0 chr9 86218197 86218315 -56053129 + MLT1I LTR MaLR 7 125 -284 1604 160 114 27 chr9 86218382 86218714 -56052730 + MER46B DNA MER2_type 1 236 0 413 212 8 4 chr9 86218714 86218839 -56052605 + MLT1I LTR MaLR 235 407 -2 1092 69 0 0 chr9 86219089 86219219 -56052225 + AluSg/x SINE Alu 168 297 -13 304 287 49 41 chr9 86219706 86219828 -56051616 + L2 LINE L2 3149 3271 -1 686 296 39 35 chr9 86220900 86221211 -56050233 - LTR67 LTR ERVL -10 547 236 445 304 173 7 chr9 86222131 86222414 -56049030 - L3 LINE CR1 -6 1571 1242 352 330 107 52 chr9 86222814 86223123 -56048321 + L2 LINE L2 2916 3241 -31 208 286 16 63 chr9 86223151 86223277 -56048167 - L3 LINE CR1 -377 1200 1081 247 324 87 49 chr9 86224456 86224641 -56046803 + MIR3 SINE MIR 15 206 -2 241 284 27 0 chr9 86224961 86225035 -56046409 + MIR SINE MIR 187 262 0 453 306 120 38 chr9 86226078 86226348 -56045096 - MLT1J2 LTR MaLR -31 419 92 2322 276 23 34 chr9 86227084 86227958 -56043486 + HAL1 LINE L1 985 1848 -659 342 67 0 0 chr9 86228164 86228209 -56043235 + (TG)n Simple_repeat Simple_repeat 2 46 0 5965 113 14 22 chr9 86228374 86229487 -56041957 + pTR5 LTR ERV1 741 1988 -450 1138 217 34 33 chr9 86229860 86230254 -56041190 - MLT1D LTR MaLR 0 505 78 1986 136 46 75 chr9 86230254 86230599 -56040845 - MER1B DNA MER1_type 0 337 3 1138 217 34 33 chr9 86230599 86230674 -56040770 - MLT1D LTR MaLR -427 78 5 688 206 146 18 chr9 86230933 86231152 -56040292 - LTR16C LTR ERVL -34 457 211 294 284 43 35 chr9 86232566 86232707 -56038737 - MIR SINE MIR -92 170 29 435 38 0 0 chr9 86232840 86232893 -56038551 + (TG)n Simple_repeat Simple_repeat 2 54 0 2259 116 0 0 chr9 86232911 86233213 -56038231 - AluSq SINE Alu -11 302 1 1508 180 55 4 chr9 86233281 86233553 -56037891 + AluJo SINE Alu 1 286 -26 213 39 0 0 chr9 86235738 86235764 -56035680 + (T)n Simple_repeat Simple_repeat 1 26 0 312 271 90 24 chr9 86235939 86236105 -56035339 - LTR33 LTR ERVL -6 515 339 341 197 30 0 chr9 86236110 86236176 -56035268 + MER5A DNA MER1_type 7 74 -115 246 32 0 0 chr9 86236395 86236426 -56035018 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 391 35 17 17 chr9 86236425 86236483 -56034961 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 737 249 103 57 chr9 86237102 86237576 -56033868 - LTR33A LTR ERVL -21 502 7 1380 290 47 20 chr9 86237647 86238198 -56033246 - L1M4 LINE L1 -1074 5072 4507 1236 262 63 83 chr9 86238272 86238967 -56032477 - L1M4 LINE L1 -1808 4338 3658 2505 209 60 30 chr9 86238983 86239586 -56031858 - MLT1E2 LTR MaLR -5 621 1 558 272 67 0 chr9 86239881 86240076 -56031368 + L1ME3A LINE L1 5743 5950 -220 1631 92 5 9 chr9 86240483 86240700 -56030744 + AluSq SINE Alu 87 302 -11 243 234 65 39 chr9 86240744 86240821 -56030623 - MER91C DNA MER1_type -13 127 49 5021 131 8 13 chr9 86240933 86241691 -56029753 - L1PA13 LINE L1 -5 6158 5405 229 248 132 8 chr9 86241935 86242064 -56029380 + MER103 DNA DNA 11 155 -11 301 345 133 29 chr9 86243754 86244281 -56027163 + L2 LINE L2 2204 2785 -529 649 137 36 95 chr9 86244419 86244587 -56026857 - Charlie5 DNA MER1_type 0 2623 2466 205 347 101 25 chr9 86244667 86244993 -56026451 - L2 LINE L2 -1147 2167 1817 240 256 72 32 chr9 86245705 86245830 -56025614 + L1P LINE L1 4920 5049 -1097 290 200 77 71 chr9 86246049 86246228 -56025216 + L1ME LINE L1 5332 5510 -652 335 272 83 37 chr9 86246351 86246564 -56024880 + HAL1b LINE L1 1204 1201 -147 252 0 0 0 chr9 86246564 86246592 -56024852 + (CA)n Simple_repeat Simple_repeat 1 28 0 335 272 83 37 chr9 86246592 86246723 -56024721 + HAL1b LINE L1 1200 1324 -24 1523 240 81 42 chr9 86247547 86247572 -56023872 - L1ME2 LINE L1 -70 6094 6071 2828 81 5 53 chr9 86247572 86247966 -56023478 + THE1C LTR MaLR 1 375 0 1523 240 81 42 chr9 86247966 86248486 -56022958 - L1ME2 LINE L1 -93 6071 5528 1512 55 0 10 chr9 86348486 86348685 -55922759 + HERVL-A2 LTR ERVL 5458 5654 0 3355 91 27 0 chr9 86348685 86349126 -55922318 + MLT2A2 LTR ERVL 1 453 0 1215 161 36 5 chr9 86349126 86349349 -55922095 + L1PA15 LINE L1 5931 6160 -5 454 195 57 24 chr9 86350936 86351059 -55920385 - MER115 DNA AcHobo -2 691 565 247 273 40 20 chr9 86351173 86351272 -55920172 + MER5B DNA MER1_type 7 107 -71 3439 70 0 13 chr9 86351474 86351928 -55919516 - LTR7 LTR ERV1 -2 448 1 498 183 103 40 chr9 86351928 86352054 -55919390 - MLT1C LTR MaLR -333 134 1 312 172 0 0 chr9 86352236 86352294 -55919150 + (TA)n Simple_repeat Simple_repeat 2 59 0 22 0 0 0 chr9 86352908 86352930 -55918514 + AT_rich Low_complexity Low_complexity 1 22 0 297 73 24 0 chr9 86353242 86353283 -55918161 + MSTD LTR MaLR 1 42 -354 956 269 39 18 chr9 86353464 86353799 -55917645 + LTR16A LTR ERVL 109 450 0 1559 112 119 61 chr9 86353897 86354174 -55917270 + AluSq SINE Alu 1 293 -20 23049 72 2 3 chr9 86354279 86357118 -55914326 - HERVL LTR ERVL -342 5312 2478 896 164 71 11 chr9 86357288 86357471 -55913973 + L1PA15 LINE L1 5742 5935 -230 3218 99 27 11 chr9 86357471 86357917 -55913527 + MLT2A2 LTR ERVL 1 453 0 19364 72 3 3 chr9 86357920 86358445 -55912999 + HERVL-A2 LTR ERVL 4 527 -5127 2286 110 0 0 chr9 86358445 86358745 -55912699 - AluSg SINE Alu -10 300 1 19364 72 3 3 chr9 86358745 86360633 -55910811 + HERVL-A2 LTR ERVL 527 2418 -3236 2349 49 39 39 chr9 86361436 86361743 -55909701 - AluY SINE Alu -4 307 1 2414 76 5 65 chr9 86362757 86363127 -55908317 + L1PA8A LINE L1 5784 6131 0 804 224 76 22 chr9 86363244 86363521 -55907923 - Charlie2 DNA MER1_type -715 2147 1856 742 212 19 66 chr9 86363579 86363791 -55907653 - L1ME2 LINE L1 0 6164 5963 1848 91 0 0 chr9 86363827 86364057 -55907387 - AluSq SINE Alu -83 230 1 268 173 0 0 chr9 86364057 86364109 -55907335 - L1ME2 LINE L1 -186 5978 5927 301 48 24 0 chr9 86364111 86364153 -55907291 + MADE1 DNA Mariner 1 43 -37 1848 231 64 56 chr9 86364167 86364283 -55907161 - L1ME2 LINE L1 -238 5924 5811 1103 124 32 0 chr9 86364283 86364468 -55906976 - L1MA4 LINE L1 0 6300 6110 1848 231 64 56 chr9 86364468 86365023 -55906421 - L1ME2 LINE L1 -351 5811 5262 342 0 0 0 chr9 86365023 86365061 -55906383 + (TG)n Simple_repeat Simple_repeat 2 39 0 1848 231 64 56 chr9 86365061 86365108 -55906336 - L1ME2 LINE L1 -900 5262 5217 1869 155 30 3 chr9 86365108 86365412 -55906032 - AluSx SINE Alu 0 312 1 1848 231 64 56 chr9 86365412 86365491 -55905953 - L1ME2 LINE L1 -945 5217 5127 2188 130 3 0 chr9 86366086 86366393 -55905051 + AluSx SINE Alu 1 308 -4 2176 118 3 13 chr9 86366613 86366928 -55904516 + AluSx SINE Alu 1 312 0 1865 101 42 42 chr9 86368177 86368487 -55902957 + AluY SINE Alu 14 311 0 360 167 78 67 chr9 86368683 86368773 -55902671 + MLT2B1 LTR ERVL 1 91 -429 432 0 0 0 chr9 86368850 86368898 -55902546 + (CA)n Simple_repeat Simple_repeat 1 48 0 234 326 34 0 chr9 86368923 86369012 -55902432 + L1ME LINE L1 5527 5618 -503 258 129 0 0 chr9 86369024 86369065 -55902379 + MIR SINE MIR 114 153 -109 416 314 69 23 chr9 86369439 86369614 -55901830 - MIR SINE MIR -60 202 20 346 270 71 32 chr9 86369742 86369868 -55901576 - L2 LINE L2 0 3313 3183 538 210 34 8 chr9 86370041 86370160 -55901284 + L1M4c LINE L1 416 537 -5766 * 2147 223 42 26 chr9 86370149 86370848 -55900596 + L1M4c LINE L1 2298 3010 -3372 822 117 0 70 chr9 86370850 86370978 -55900466 + FLAM_C SINE Alu 6 124 -19 703 207 12 12 chr9 86370980 86371144 -55900300 + GA-rich Low_complexity Low_complexity 2 165 0 239 298 0 0 chr9 86371148 86371195 -55900249 + G-rich Low_complexity Low_complexity 4 50 0 273 267 84 46 chr9 86371700 86371831 -55899613 - L2 LINE L2 -3 3310 3175 1907 124 10 28 chr9 86372083 86372374 -55899070 + AluSx SINE Alu 1 286 -26 565 77 39 23 chr9 86372472 86372602 -55898842 + (CATAT)n Simple_repeat Simple_repeat 2 133 0 248 288 33 72 chr9 86372968 86373121 -55898323 - MLT1H LTR MaLR 0 542 396 * 306 310 9 9 chr9 86373117 86373230 -55898214 - MLT1H LTR MaLR -339 210 98 2580 49 0 3 chr9 86373376 86373680 -55897764 + AluY SINE Alu 1 303 -8 732 210 233 0 chr9 86374196 86374372 -55897072 + MER58A DNA MER1_type 1 217 -7 11482 172 126 14 chr9 86374385 86377710 -55893734 + L1PBa LINE L1 1 3696 -3166 825 330 89 14 chr9 86378452 86378889 -55892555 + L3 LINE CR1 1098 1567 -10 638 297 31 5 chr9 86379482 86379677 -55891767 + LTR67 LTR ERVL 357 556 -1 198 0 0 0 chr9 86379942 86379964 -55891480 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 568 103 0 0 chr9 86379978 86380056 -55891388 - AluY SINE Alu -74 237 160 500 336 93 10 chr9 86380056 86380368 -55891076 + ERVL LTR ERVL 1058 1395 -4259 1255 268 66 42 chr9 86380691 86381192 -55890252 - MER74B LTR ERVL -54 568 56 289 300 112 0 chr9 86381207 86381362 -55890082 + ERVL LTR ERVL 1766 1941 -3718 877 321 43 7 chr9 86381464 86381769 -55889675 + ERVL LTR ERVL 2115 2430 -3334 795 264 11 6 chr9 86381899 86382081 -55889363 - MER58A DNA MER1_type 0 224 42 823 169 17 35 chr9 86382540 86382712 -55888732 + MER58 DNA MER1_type 28 196 -145 224 299 0 0 chr9 86384017 86384084 -55887360 + GA-rich Low_complexity Low_complexity 6 72 0 294 122 0 0 chr9 86384409 86384450 -55886994 + L1P4 LINE L1 5744 5784 -381 2456 135 40 40 chr9 86384550 86385024 -55886420 - LTR1 LTR ERV1 -296 489 16 1718 148 14 7 chr9 86385037 86385328 -55886116 - L1MC1 LINE L1 -270 6063 5771 2166 132 0 0 chr9 86385344 86385648 -55885796 + AluSx SINE Alu 1 304 -8 1623 211 92 10 chr9 86385778 86386339 -55885105 - MLT2F LTR ERVL -10 653 1 367 313 139 46 chr9 86386341 86386600 -55884844 - L1MEd LINE L1 -5598 521 239 225 108 0 0 chr9 86386843 86386880 -55884564 + (CA)n Simple_repeat Simple_repeat 2 38 0 1959 135 0 27 chr9 86387786 86388083 -55883361 - AluSx SINE Alu -23 289 1 570 281 109 30 chr9 86388097 86388399 -55883045 - HAL1b LINE L1 -49 1299 974 318 314 74 78 chr9 86388890 86389132 -55882312 - HAL1 LINE L1 -2266 241 1 295 288 136 0 chr9 86389868 86389993 -55881451 + LTR33 LTR ERVL 380 521 0 28 61 0 0 chr9 86389998 86390047 -55881397 + AT_rich Low_complexity Low_complexity 1 49 0 285 263 105 44 chr9 86390536 86390650 -55880794 + L2 LINE L2 3148 3268 -4 216 184 61 0 chr9 86391951 86392000 -55879444 + GA-rich Low_complexity Low_complexity 4 55 0 6863 133 11 10 chr9 86392319 86393356 -55878088 + THE1C-int LTR MaLR 543 1580 0 2769 111 5 11 chr9 86393356 86393733 -55877711 + THE1C LTR MaLR 1 375 0 213 224 30 15 chr9 86394175 86394242 -55877202 + (TA)n Simple_repeat Simple_repeat 1 68 0 570 15 0 0 chr9 86394246 86394313 -55877131 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 27 29 0 0 chr9 86394509 86394543 -55876901 + AT_rich Low_complexity Low_complexity 1 34 0 316 200 140 87 chr9 86394615 86394765 -55876679 - MER103 DNA DNA -7 159 2 352 285 32 8 chr9 86394833 86394956 -55876488 - MIR SINE MIR -113 149 24 318 286 63 8 chr9 86395477 86395603 -55875841 - MIR SINE MIR -21 241 109 568 273 52 21 chr9 86395604 86395798 -55875646 + MIR SINE MIR 7 206 -56 3122 250 122 35 chr9 86396499 86398188 -55873256 + L2 LINE L2 1353 3186 -127 672 259 228 46 chr9 86398868 86399494 -55871950 + HAL1 LINE L1 1499 2272 -235 904 219 161 45 chr9 86399494 86399892 -55871552 + MLT1J1 LTR MaLR 3 446 0 672 259 228 46 chr9 86399892 86399979 -55871465 + HAL1 LINE L1 2272 2342 -165 252 222 0 0 chr9 86399969 86400023 -55871421 + L1MC4 LINE L1 6649 6702 -1340 * 29 28 0 0 chr9 86400221 86400257 -55871187 + AT_rich Low_complexity Low_complexity 1 36 0 595 212 25 0 chr9 86400699 86400817 -55870627 - MIR SINE MIR -136 126 6 1922 150 38 52 chr9 86402006 86402216 -55869228 - MLT1A1 LTR MaLR 0 365 161 2210 121 7 0 chr9 86402216 86402523 -55868921 - AluSx SINE Alu -1 311 3 1922 150 38 52 chr9 86402523 86402679 -55868765 - MLT1A1 LTR MaLR -204 161 4 256 67 0 0 chr9 86403148 86403178 -55868266 + U6 snRNA snRNA 1 30 -77 186 133 0 0 chr9 86404005 86404035 -55867409 + (CCA)n Simple_repeat Simple_repeat 1 30 0 478 294 98 14 chr9 86404748 86404891 -55866553 - L2 LINE L2 -2 3270 3116 295 268 14 0 chr9 86409158 86409229 -55862215 + CT-rich Low_complexity Low_complexity 3 74 0 1390 284 82 2 chr9 86411028 86411444 -55860000 + LTR16C LTR ERVL 43 491 0 466 294 113 51 chr9 86411570 86411941 -55859503 + MLT1L LTR MaLR 1 394 -221 220 262 48 48 chr9 86412161 86412264 -55859180 + L2 LINE L2 3117 3219 -94 619 225 125 62 chr9 86413006 86413246 -55858198 - MIR SINE MIR 0 262 8 182 266 77 89 chr9 86413474 86413643 -55857801 + L2 LINE L2 2888 3054 -259 216 189 38 0 chr9 86414108 86414161 -55857283 + L2 LINE L2 2291 2345 -969 364 255 92 121 chr9 86414247 86414651 -55856793 + MLT1L LTR MaLR 100 593 -20 351 334 100 58 chr9 86414668 86414988 -55856456 + L2 LINE L2 2349 2654 -618 410 0 20 0 chr9 86414988 86415038 -55856406 + (CA)n Simple_repeat Simple_repeat 2 52 0 351 334 100 58 chr9 86415038 86415598 -55855846 + L2 LINE L2 2654 3272 0 2123 134 0 0 chr9 86415744 86416043 -55855401 - AluSc SINE Alu -10 299 1 2105 120 3 10 chr9 86416811 86417103 -55854341 + AluSq SINE Alu 1 290 -23 347 307 31 8 chr9 86417137 86417264 -55854180 + MIR3 SINE MIR 34 163 -45 303 325 80 44 chr9 86420148 86420397 -55851047 + L1MD2 LINE L1 5259 5516 -605 285 200 94 71 chr9 86420748 86420781 -55850663 + L1ME4a LINE L1 5936 5967 -154 6662 140 57 8 chr9 86420781 86421951 -55849493 + Tigger3b DNA MER2_type 4 1230 -1 285 200 94 71 chr9 86421951 86422087 -55849357 + L1ME4a LINE L1 5967 6109 -12 192 371 22 0 chr9 86422690 86422779 -55848665 + MIR SINE MIR 51 141 -67 3535 197 40 18 chr9 86423352 86423601 -55847843 + L1MD2 LINE L1 5494 5736 -623 1871 160 13 7 chr9 86423601 86423908 -55847536 + AluJb SINE Alu 1 309 -3 3535 197 40 18 chr9 86423908 86424398 -55847046 + L1MD2 LINE L1 5736 6250 -109 353 219 0 0 chr9 86424957 86425021 -55846423 + LTR16C LTR ERVL 418 481 -10 2383 101 3 0 chr9 86425288 86425595 -55845849 + AluSp SINE Alu 1 308 -5 712 217 0 0 chr9 86425880 86426009 -55845435 + MER8 DNA MER2_type 1 129 -110 303 260 16 65 chr9 86426256 86426379 -55845065 + MIR3 SINE MIR 86 202 -6 188 322 0 0 chr9 86426430 86426489 -55844955 - L2 LINE L2 0 3272 3214 2417 226 133 28 chr9 86427504 86428107 -55843337 + L1ME1 LINE L1 4642 5180 -986 1860 133 0 28 chr9 86428107 86428393 -55843051 + AluSx SINE Alu 35 312 0 2417 226 133 28 chr9 86428393 86429143 -55842301 + L1ME1 LINE L1 5180 6158 -8 2022 149 0 0 chr9 86429333 86429614 -55841830 + AluSx SINE Alu 1 281 -31 354 23 0 0 chr9 86429615 86429658 -55841786 + (CA)n Simple_repeat Simple_repeat 2 44 0 1161 261 117 22 chr9 86429704 86430198 -55841246 - L1ME3A LINE L1 -215 5955 5415 270 0 0 0 chr9 86430356 86430386 -55841058 + (CA)n Simple_repeat Simple_repeat 2 31 0 480 48 0 0 chr9 86431873 86431936 -55839508 + (CA)n Simple_repeat Simple_repeat 1 63 0 364 343 0 14 chr9 86432008 86432154 -55839290 - MIR3 SINE MIR -23 185 42 629 279 41 20 chr9 86432575 86432819 -55838625 - MIR SINE MIR -12 250 2 253 248 69 76 chr9 86432892 86432944 -55838500 + MIR3 SINE MIR 43 94 -114 2742 199 56 26 chr9 86432944 86433531 -55837913 + MER77 LTR ERV1 1 605 0 253 248 69 76 chr9 86433531 86433623 -55837821 + MIR3 SINE MIR 94 186 -22 1596 261 50 7 chr9 86433823 86434282 -55837162 + MLT1J LTR MaLR 26 504 -7 688 260 43 8 chr9 86434970 86435205 -55836239 - MIR SINE MIR -19 243 1 367 299 31 8 chr9 86435359 86435486 -55835958 - MIR SINE MIR -113 149 20 855 145 14 21 chr9 86436305 86436450 -55834994 + AluJo SINE Alu 10 153 -159 1675 96 4 0 chr9 86436562 86436813 -55834631 + HERVH LTR ERV1 480 731 -6982 17055 93 83 13 chr9 86436813 86439437 -55832007 + HERVH LTR ERV1 483 3290 -4423 * 32802 62 2 23 chr9 86439427 86443742 -55827702 + HERVH LTR ERV1 3492 7713 0 3660 51 0 2 chr9 86443742 86444191 -55827253 + LTR7 LTR ERV1 1 448 -2 810 229 147 7 chr9 86444195 86444488 -55826956 + MLT1C LTR MaLR 132 465 -2 323 160 0 0 chr9 86444687 86444737 -55826707 - 5S rRNA rRNA -71 50 1 323 278 24 24 chr9 86444795 86444921 -55826523 - L1ME3A LINE L1 -208 5962 5837 264 293 114 0 chr9 86444933 86445056 -55826388 - L1ME3A LINE L1 -391 5779 5643 246 214 0 0 chr9 86445089 86445151 -55826293 - L1ME3A LINE L1 -517 5653 5592 348 312 134 13 chr9 86445280 86445594 -55825850 + L1ME4a LINE L1 3661 4012 -2134 27 29 0 0 chr9 86445908 86445942 -55825502 + AT_rich Low_complexity Low_complexity 1 34 0 454 298 72 56 chr9 86445969 86446415 -55825029 + L1ME4a LINE L1 5361 5824 -297 37 23 0 0 chr9 86447207 86447251 -55824193 + AT_rich Low_complexity Low_complexity 1 44 0 1843 155 29 19 chr9 86447496 86447805 -55823639 - AluJb SINE Alu 0 312 1 1876 226 60 29 chr9 86448067 86448461 -55822983 + HsTC2c DNA Tc2 169 582 -1316 2509 58 0 6 chr9 86448461 86448772 -55822672 + AluY SINE Alu 1 309 -2 1876 226 60 29 chr9 86448772 86448859 -55822585 + HsTC2c DNA Tc2 582 665 -64 225 225 0 0 chr9 86448967 86449007 -55822437 + U6 snRNA snRNA 1 40 -67 2753 127 20 0 chr9 86449127 86449601 -55821843 + MER1A DNA MER1_type 2 523 -6 302 219 143 25 chr9 86449739 86449858 -55821586 + L1ME4a LINE L1 5989 6121 0 447 263 130 33 chr9 86449977 86450308 -55821136 + L1ME4a LINE L1 5748 6110 -11 2001 134 58 9 chr9 86450849 86451177 -55820267 + MER7A DNA MER2_type 4 345 -1 25 0 0 0 chr9 86451236 86451261 -55820183 + AT_rich Low_complexity Low_complexity 1 25 0 2661 101 11 11 chr9 86451301 86451676 -55819768 + THE1C LTR MaLR 1 375 0 2156 160 53 39 chr9 86451676 86452381 -55819063 + THE1C-int LTR MaLR 1 705 -875 9578 184 18 1 chr9 86452481 86453665 -55817779 + L1PB1 LINE L1 3204 4367 -1784 704 22 11 0 chr9 86453665 86453755 -55817689 + (CAATA)n Simple_repeat Simple_repeat 1 91 0 9578 184 18 1 chr9 86453755 86455470 -55815974 + L1PB1 LINE L1 4367 6150 -1 1258 244 142 6 chr9 86455676 86455997 -55815447 - MLT1I LTR MaLR -6 403 28 198 0 0 0 chr9 86455997 86456019 -55815425 + (GA)n Simple_repeat Simple_repeat 1 22 0 1258 244 142 6 chr9 86456019 86456050 -55815394 - MLT1I LTR MaLR -381 28 3 1380 134 21 25 chr9 86457008 86457246 -55814198 - AluSg/x SINE Alu -3 309 73 206 214 0 0 chr9 86457410 86457452 -55813992 + L2 LINE L2 3264 3305 -8 1765 126 76 14 chr9 86459211 86459488 -55811956 + AluSx SINE Alu 1 294 -18 365 141 192 0 chr9 86459978 86460056 -55811388 - LTR67 LTR ERVL -7 550 458 1923 136 3 27 chr9 86460152 86460489 -55810955 - AluJb SINE Alu 0 330 1 1349 205 67 98 chr9 86460766 86461287 -55810157 - MLT1D LTR MaLR 0 505 1 31380 111 13 61 chr9 86462253 86468712 -55802732 - L1PA7 LINE L1 0 6154 12 855 252 44 65 chr9 86469114 86469572 -55801872 + MLT1J LTR MaLR 4 509 -2 190 289 96 48 chr9 86470320 86470403 -55801041 - MIR SINE MIR -137 125 39 2199 101 0 3 chr9 86471386 86471692 -55799752 - AluSg SINE Alu 0 310 6 1069 274 73 24 chr9 86472147 86472640 -55798804 + LTR33 LTR ERVL 1 517 -4 604 259 0 0 chr9 86475100 86475247 -55796197 - L1MB7 LINE L1 -16 6168 6022 2056 117 0 0 chr9 86475264 86475554 -55795890 - AluSg SINE Alu -20 290 1 393 255 222 7 chr9 86475693 86475846 -55795598 + MIR SINE MIR 49 234 -28 391 353 20 25 chr9 86476738 86476905 -55794539 + MER5A DNA MER1_type 8 185 -4 2361 74 0 3 chr9 86477220 86477532 -55793912 + AluY SINE Alu 1 311 0 1350 251 55 11 chr9 86477535 86477914 -55793530 - MLT1C LTR MaLR 0 467 72 296 211 0 0 chr9 86478602 86478654 -55792790 - MLT1H LTR MaLR -2 547 496 541 235 139 18 chr9 86478663 86478829 -55792615 + MER58C DNA MER1_type 27 212 -3 1576 229 97 60 chr9 86478829 86479314 -55792130 - MLT1H LTR MaLR -46 503 1 222 361 0 0 chr9 86480030 86480091 -55791353 - L3 LINE CR1 -89 1488 1428 606 281 114 53 chr9 86480642 86481097 -55790347 + MLT1J LTR MaLR 26 508 -3 1022 215 175 28 chr9 86481097 86481352 -55790092 - MSTD LTR MaLR 0 396 81 1757 118 93 4 chr9 86481352 86481631 -55789813 - AluSx SINE Alu -8 304 1 1022 215 175 28 chr9 86481631 86481701 -55789743 - MSTD LTR MaLR -315 81 23 260 276 41 20 chr9 86481802 86481900 -55789544 + L1 LINE L1 2677 2776 -3370 479 198 0 74 chr9 86481900 86482021 -55789423 + FLAM_C SINE Alu 6 117 -26 506 153 17 17 chr9 86482021 86482139 -55789305 + GA-rich Low_complexity Low_complexity 1 118 0 9614 177 42 15 chr9 86482143 86484266 -55787178 + L1 LINE L1 2769 4948 -1198 1426 203 14 14 chr9 86484319 86484605 -55786839 + AluJo SINE Alu 6 291 -21 623 209 43 0 chr9 86484606 86484745 -55786699 + L1 LINE L1 4984 5128 -1018 615 147 0 0 chr9 86484745 86484840 -55786604 + L1MB1 LINE L1 6071 6165 -3 900 164 57 0 chr9 86484845 86485004 -55786440 - MSTB LTR MaLR -48 378 211 518 262 192 59 chr9 86485179 86485713 -55785731 - L2 LINE L2 -558 2756 2097 345 24 0 0 chr9 86486266 86486308 -55785136 + (CA)n Simple_repeat Simple_repeat 2 43 0 382 313 52 107 chr9 86486956 86487180 -55784264 - L2 LINE L2 -13 3259 3053 2024 188 91 2 chr9 86487180 86487643 -55783801 + MLT1D LTR MaLR 1 504 -1 382 313 52 107 chr9 86487643 86487709 -55783735 - L2 LINE L2 -219 3053 2985 791 201 175 104 chr9 86487897 86488273 -55783171 - MLT1H LTR MaLR -2 547 138 2322 116 14 77 chr9 86488273 86488507 -55782937 - MLT1B LTR MaLR 0 390 192 2276 89 0 10 chr9 86488507 86488821 -55782623 - AluSp SINE Alu -2 311 1 2322 116 14 77 chr9 86488821 86489001 -55782443 - MLT1B LTR MaLR -198 192 2 791 201 175 104 chr9 86489001 86489036 -55782408 - MLT1H LTR MaLR -411 138 107 545 179 113 0 chr9 86489297 86489403 -55782041 - MLT1G LTR MaLR -2 553 436 2201 99 0 0 chr9 86489447 86489741 -55781703 - AluSx SINE Alu -18 294 1 1061 176 0 11 chr9 86489751 86489927 -55781517 - FAM SINE Alu 0 175 2 266 258 37 18 chr9 86489934 86490030 -55781414 - MLT1H LTR MaLR -335 214 76 851 288 78 3 chr9 86490513 86490832 -55780612 - LTR16C LTR ERVL -81 410 68 307 262 90 62 chr9 86491017 86491049 -55780395 - HAL1 LINE L1 -38 2469 2439 1570 158 18 4 chr9 86491049 86491321 -55780123 + AluJb SINE Alu 5 280 -32 189 0 0 0 chr9 86491321 86491342 -55780102 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 307 262 90 62 chr9 86491342 86491453 -55779991 - HAL1 LINE L1 -67 2440 2321 24 53 0 0 chr9 86491584 86491622 -55779822 + AT_rich Low_complexity Low_complexity 1 38 0 505 303 68 0 chr9 86491806 86491968 -55779476 - MIR SINE MIR -54 208 36 1572 197 10 61 chr9 86492006 86492417 -55779027 + MLT1B LTR MaLR 1 390 0 239 257 27 14 chr9 86492418 86492492 -55778952 + GA-rich Low_complexity Low_complexity 5 79 0 1120 253 69 20 chr9 86493529 86493937 -55777507 - LTR16C LTR ERVL -2 489 62 749 244 59 14 chr9 86495359 86495713 -55775731 - MLT1G LTR MaLR -239 351 1 1048 182 33 14 chr9 86496488 86496702 -55774742 + MER58A DNA MER1_type 7 224 0 423 253 147 27 chr9 86497549 86497607 -55773837 + MIR SINE MIR 66 116 -146 1815 119 67 0 chr9 86497607 86497921 -55773523 - AluJb SINE Alu 0 312 1 423 253 147 27 chr9 86497921 86498012 -55773432 + MIR SINE MIR 116 233 -29 440 246 42 42 chr9 86498410 86498552 -55772892 + MIR3 SINE MIR 32 173 -35 398 241 20 4 chr9 86499586 86499841 -55771603 + (CA)n Simple_repeat Simple_repeat 1 259 0 479 223 26 109 chr9 86499942 86500135 -55771309 + MLT1K LTR MaLR 410 586 -2 2033 118 3 3 chr9 86500233 86500538 -55770906 + AluSg SINE Alu 1 305 -5 2352 90 3 0 chr9 86500575 86500887 -55770557 + AluSq SINE Alu 1 313 0 323 203 0 0 chr9 86500887 86500951 -55770493 + L1MB8 LINE L1 6105 6168 -10 194 372 82 43 chr9 86501746 86501953 -55769491 + L2 LINE L2 2960 3174 -98 2235 102 0 0 chr9 86502390 86502694 -55768750 + AluSx SINE Alu 1 304 -8 206 300 0 0 chr9 86502730 86502770 -55768674 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr9 86502794 86502822 -55768622 + (TGGA)n Simple_repeat Simple_repeat 1 28 0 234 230 40 81 chr9 86505075 86505109 -55766335 + L1MC4 LINE L1 7901 7935 -107 2327 57 3 7 chr9 86505109 86505405 -55766039 + AluY SINE Alu 1 295 -16 234 230 40 81 chr9 86505405 86505518 -55765926 + L1MC4 LINE L1 7935 8042 0 327 261 193 34 chr9 86505757 86505995 -55765449 + L1MC/D LINE L1 5561 5836 -1972 436 194 0 74 chr9 86507023 86507131 -55764313 + MER5A DNA MER1_type 1 100 -89 351 318 0 9 chr9 86507192 86507299 -55764145 - MLT1J LTR MaLR -306 205 100 342 205 0 0 chr9 86507334 86507412 -55764032 + (CA)n Simple_repeat Simple_repeat 2 79 0 739 244 170 62 chr9 86508000 86508501 -55762943 - MLT1H1 LTR MaLR 0 555 1 318 289 89 11 chr9 86508501 86508591 -55762853 - MIR SINE MIR -62 146 50 567 311 147 17 chr9 86509152 86509445 -55761999 + MLT1J LTR MaLR 1 331 -180 697 270 56 15 chr9 86509578 86509774 -55761670 + MLT1I LTR MaLR 206 409 0 707 312 86 20 chr9 86509988 86510280 -55761164 - LTR16C LTR ERVL -170 321 11 301 305 154 50 chr9 86510410 86510689 -55760755 + L2 LINE L2 2819 3126 -146 1277 174 86 99 chr9 86511310 86511672 -55759772 + MLT1A1 LTR MaLR 1 357 -8 451 307 84 0 chr9 86512090 86512269 -55759175 - MIR SINE MIR -3 259 66 185 0 40 0 chr9 86512811 86512836 -55758608 + (CA)n Simple_repeat Simple_repeat 2 27 0 944 217 63 62 chr9 86515519 86516060 -55755384 - MLT1E2 LTR MaLR 0 626 32 1494 170 59 0 chr9 86516060 86516366 -55755078 - L1MA4 LINE L1 0 6300 5977 944 217 63 62 chr9 86516366 86516399 -55755045 - MLT1E2 LTR MaLR -594 32 1 344 341 33 42 chr9 86516544 86516758 -55754686 + MIR SINE MIR 20 231 -31 399 311 34 80 chr9 86516790 86517054 -55754390 + L2 LINE L2 3012 3263 -9 723 284 100 4 chr9 86517432 86517671 -55753773 - LTR40a LTR ERVL -255 264 3 574 253 103 96 chr9 86517709 86518105 -55753339 - MLT1J LTR MaLR -3 508 110 661 218 3 14 chr9 86518461 86518835 -55752609 + (CA)n Simple_repeat Simple_repeat 1 369 0 231 247 99 31 chr9 86520703 86520865 -55750579 + L2 LINE L2 2695 2867 -447 410 241 36 18 chr9 86521851 86521963 -55749481 + MIR3 SINE MIR 81 194 -14 243 0 0 0 chr9 86521986 86522013 -55749431 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1767 160 11 18 chr9 86522019 86522301 -55749143 - AluSx SINE Alu -32 280 1 504 329 53 13 chr9 86522357 86522582 -55748862 - MIR SINE MIR -9 253 20 218 400 41 0 chr9 86524173 86524318 -55747126 + MIR SINE MIR 45 195 -67 2029 126 0 11 chr9 86525680 86525998 -55745446 - AluSx SINE Alu 0 315 1 510 185 294 7 chr9 86528211 86528357 -55743087 + MER5A DNA MER1_type 2 189 0 2050 127 6 16 chr9 86528636 86528950 -55742494 - AluSx SINE Alu -1 311 1 22 0 0 0 chr9 86529090 86529112 -55742332 + AT_rich Low_complexity Low_complexity 1 22 0 1181 204 79 33 chr9 86529233 86529343 -55742101 - MER2 DNA MER2_type 0 345 241 630 188 0 55 chr9 86529343 86529471 -55741973 + FLAM_A SINE Alu 1 121 -12 1181 204 79 33 chr9 86529471 86529689 -55741755 - MER2 DNA MER2_type -104 241 2 35 63 0 0 chr9 86529759 86529822 -55741622 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr9 86530270 86530291 -55741153 + AT_rich Low_complexity Low_complexity 1 21 0 2275 70 0 3 chr9 86530349 86530633 -55740811 + AluSc SINE Alu 1 283 -26 213 65 0 0 chr9 86530636 86530667 -55740777 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2219 108 17 10 chr9 86530983 86531280 -55740164 - AluSx SINE Alu -13 299 1 2329 104 3 0 chr9 86533522 86533831 -55737613 - AluSx SINE Alu -2 310 1 231 36 0 0 chr9 86535051 86535079 -55736365 + (GA)n Simple_repeat Simple_repeat 1 28 0 295 358 57 0 chr9 86535427 86535603 -55735841 + L2 LINE L2 2216 2401 -913 1856 137 137 0 chr9 86535739 86536081 -55735363 + MSTB LTR MaLR 1 389 -37 219 333 50 35 chr9 86536306 86536447 -55734997 + L2 LINE L2 3162 3304 -9 362 295 68 43 chr9 86537330 86537527 -55733917 + MIR SINE MIR 11 208 -54 26 0 0 0 chr9 86537879 86537905 -55733539 + AT_rich Low_complexity Low_complexity 1 26 0 1568 159 159 6 chr9 86538136 86538451 -55732993 + MER47A DNA MER2_type 4 366 0 331 314 71 29 chr9 86538656 86538796 -55732648 + MIR SINE MIR 20 165 -97 894 154 30 6 chr9 86538867 86539036 -55732408 - MER68 LTR ERV1 -2 560 388 1004 275 122 34 chr9 86539544 86540174 -55731270 + L1MEc LINE L1 789 1362 -4853 2223 102 0 3 chr9 86540174 86540467 -55730977 + AluSc SINE Alu 1 292 -17 1004 275 122 34 chr9 86540467 86540815 -55730629 + L1MEc LINE L1 1362 1678 -4537 946 177 27 5 chr9 86540815 86541001 -55730443 + L1PA13 LINE L1 5970 6159 -4 1004 275 122 34 chr9 86541001 86541871 -55729573 + L1MEc LINE L1 1678 2762 -3453 1943 127 64 14 chr9 86543010 86543356 -55728088 + L1MB5 LINE L1 5812 6174 0 2008 136 0 17 chr9 86543480 86543775 -55727669 - AluJb SINE Alu -22 290 1 293 279 14 75 chr9 86544217 86544364 -55727080 + HAL1 LINE L1 2 139 -2368 3109 123 48 16 chr9 86544450 86544946 -55726498 + MER41E LTR ERV1 1 512 0 315 359 28 7 chr9 86545091 86545233 -55726211 + HAL1 LINE L1 251 395 -2112 649 240 54 48 chr9 86545570 86545946 -55725498 + L1MEd LINE L1 1384 1803 -4918 2009 89 29 83 chr9 86545946 86546259 -55725185 + AluSg SINE Alu 1 296 -14 649 240 54 48 chr9 86546259 86546425 -55725019 + L1MEd LINE L1 1803 1966 -4755 1952 112 0 0 chr9 86546690 86546949 -55724495 - AluSg1 SINE Alu -13 296 38 462 203 210 6 chr9 86547040 86547262 -55724182 + L1MEd LINE L1 2397 2708 -3965 7887 62 18 43 chr9 86547487 86548560 -55722884 + SVA Other Other 339 1384 -2 2248 114 0 0 chr9 86548787 86549084 -55722360 - AluSx SINE Alu -15 297 1 2033 118 0 21 chr9 86549449 86549737 -55721707 - AluSx SINE Alu -30 282 1 1072 188 19 83 chr9 86549774 86550098 -55721346 - Charlie4a DNA MER1_type -1 507 205 304 50 17 67 chr9 86550472 86550532 -55720912 + (TCTCCC)n Simple_repeat Simple_repeat 3 59 0 1850 152 11 33 chr9 86550807 86551169 -55720275 + MLT1A1 LTR MaLR 12 365 0 2536 207 137 60 chr9 86551169 86552468 -55718976 + MLT1A1-int LTR MaLR 1 1610 -125 2041 167 18 0 chr9 86552468 86552809 -55718635 + MER7A DNA MER2_type 1 345 -1 2536 207 137 60 chr9 86552809 86552942 -55718502 + MLT1A1-int LTR MaLR 1610 1731 -4 923 200 22 5 chr9 86552967 86553152 -55718292 + MLT1A1 LTR MaLR 178 365 0 1962 138 3 35 chr9 86554239 86554551 -55716893 + AluJo SINE Alu 1 302 -10 2130 135 0 3 chr9 86555310 86555613 -55715831 + AluSx SINE Alu 1 302 -10 402 244 153 51 chr9 86555654 86556025 -55715419 + L1MEd LINE L1 926 1426 -1064 187 351 13 26 chr9 86556025 86556102 -55715342 - L2 LINE L2 -293 2979 2904 983 214 98 14 chr9 86556112 86556407 -55715037 + MER5C DNA MER1_type 5 324 0 524 332 186 25 chr9 86556418 86557062 -55714382 - L2 LINE L2 -419 2895 2148 28 48 0 0 chr9 86557387 86557429 -55714015 + AT_rich Low_complexity Low_complexity 1 42 0 397 208 40 10 chr9 86557998 86558099 -55713345 - Tigger7 DNA MER2_type 0 2487 2384 * 1351 179 7 50 chr9 86558093 86558372 -55713072 - Tigger7 DNA MER2_type -466 267 1 343 164 0 0 chr9 86558898 86558959 -55712485 + L1MD3 LINE L1 6444 6504 -1491 30 45 0 0 chr9 86559154 86559198 -55712246 + AT_rich Low_complexity Low_complexity 1 44 0 629 144 18 9 chr9 86560319 86560430 -55711014 + L1MC2 LINE L1 6232 6343 -1 27 62 0 0 chr9 86560577 86560625 -55710819 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr9 86561769 86561790 -55709654 + AT_rich Low_complexity Low_complexity 1 21 0 759 161 0 0 chr9 86561942 86562060 -55709384 + FLAM_C SINE Alu 1 118 -25 27 92 0 0 chr9 86562138 86562214 -55709230 + AT_rich Low_complexity Low_complexity 1 76 0 25 31 0 0 chr9 86562749 86562781 -55708663 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr9 86563195 86563215 -55708229 + (TG)n Simple_repeat Simple_repeat 1 20 0 27 29 0 0 chr9 86563494 86563528 -55707916 + AT_rich Low_complexity Low_complexity 1 34 0 2066 101 11 7 chr9 86563582 86563869 -55707575 + AluSq SINE Alu 14 301 -12 229 120 0 4 chr9 86564010 86564088 -55707356 - Alu SINE Alu 0 302 194 421 271 107 12 chr9 86564093 86564372 -55707072 + L1M1 LINE L1 5308 5616 -527 216 356 69 29 chr9 86564861 86565035 -55706409 + MIR SINE MIR 2 182 -80 231 234 0 0 chr9 86565146 86565193 -55706251 - L2 LINE L2 0 3272 3226 1263 159 0 10 chr9 86565437 86565645 -55705799 + MER46A DNA MER2_type 31 236 0 1282 219 105 6 chr9 86565666 86566000 -55705444 - L1MD3 LINE L1 -8 7987 7621 2129 115 0 10 chr9 86566008 86566303 -55705141 + AluSx SINE Alu 1 292 -20 1519 231 98 7 chr9 86566486 86566914 -55704530 + MLT1D LTR MaLR 37 503 -2 361 298 48 64 chr9 86567350 86567538 -55703906 - L2 LINE L2 -11 3302 3118 988 233 44 7 chr9 86568162 86568432 -55703012 - HAL1 LINE L1 -756 1751 1472 354 306 116 22 chr9 86568469 86569117 -55702327 + L1M4 LINE L1 4316 5022 -1124 25 0 0 0 chr9 86569388 86569413 -55702031 + AT_rich Low_complexity Low_complexity 1 25 0 2084 108 26 7 chr9 86569720 86570025 -55701419 + AluSq SINE Alu 1 311 -2 252 310 0 0 chr9 86570912 86570970 -55700474 - L2 LINE L2 -4 3268 3211 462 271 113 0 chr9 86572765 86572898 -55698546 - MIR3 SINE MIR -31 177 30 552 270 40 11 chr9 86573237 86573411 -55698033 - MER46C DNA MER2_type 0 338 160 238 227 0 40 chr9 86573557 86573632 -55697812 - L1ME4a LINE L1 -3 6118 6047 267 257 68 95 chr9 86573787 86573935 -55697509 - L1ME4a LINE L1 -256 5865 5722 334 318 262 23 chr9 86573940 86574245 -55697199 - L2 LINE L2 -5 3267 2890 241 161 125 0 chr9 86574545 86574601 -55696843 - MER113 DNA MER1_type? -415 106 44 340 308 30 96 chr9 86574635 86574937 -55696507 - L2 LINE L2 -516 2798 2517 236 167 0 0 chr9 86576403 86576445 -55694999 + L1MC5 LINE L1 7192 7233 -728 1766 235 63 37 chr9 86576468 86577216 -55694228 + L1MC5 LINE L1 7246 7917 -44 1180 148 160 49 chr9 86577751 86578014 -55693430 + AluJb SINE Alu 1 292 -10 206 264 38 0 chr9 86578054 86578107 -55693337 + L2 LINE L2 3251 3305 -8 2162 92 4 0 chr9 86578931 86579240 -55692204 - AluSx SINE Alu 0 310 1 22 56 0 0 chr9 86579888 86579924 -55691520 + AT_rich Low_complexity Low_complexity 1 36 0 330 325 159 32 chr9 86580563 86580902 -55690542 - L1M4 LINE L1 -1711 4435 4054 427 248 33 16 chr9 86580958 86581079 -55690365 - MIR SINE MIR 0 262 140 401 308 15 0 chr9 86581128 86581261 -55690183 - L1M4 LINE L1 -2214 3932 3798 2062 102 3 10 chr9 86582141 86582434 -55689010 - AluSx SINE Alu -21 291 1 423 0 0 0 chr9 86582523 86582570 -55688874 + (CA)n Simple_repeat Simple_repeat 2 48 0 357 162 0 0 chr9 86582583 86582651 -55688793 + GA-rich Low_complexity Low_complexity 1 68 0 842 272 58 21 chr9 86583290 86583533 -55687911 + MIR SINE MIR 8 259 -3 296 301 55 14 chr9 86583554 86583700 -55687744 - HAL1 LINE L1 -1027 1480 1329 9354 172 58 76 chr9 86583781 86586017 -55685427 + L1M2 LINE L1 1 2196 -4653 * 21128 138 40 13 chr9 86586013 86589504 -55681940 + L1M1 LINE L1 15 3600 -3965 6646 104 18 13 chr9 86589498 86590610 -55680834 + L1MA4A LINE L1 5175 6292 -11 * 441 242 56 35 chr9 86591595 86591826 -55679618 + L1M1 LINE L1 3769 4004 -3561 353 266 112 21 chr9 86592099 86592242 -55679202 + L1M1 LINE L1 4097 4252 -3313 1860 242 42 47 chr9 86592367 86592704 -55678740 + L1MC4 LINE L1 6456 6790 -1252 2251 72 35 0 chr9 86592704 86592994 -55678450 - AluSq SINE Alu -13 300 1 1860 242 42 47 chr9 86592994 86593272 -55678172 + L1MC4 LINE L1 6790 7068 -974 316 218 51 0 chr9 86593278 86593356 -55678088 + L1MC4a LINE L1 7158 7239 -569 195 42 0 0 chr9 86594564 86594588 -55676856 + (T)n Simple_repeat Simple_repeat 1 24 0 2052 128 0 3 chr9 86595105 86595393 -55676051 - AluSg SINE Alu -23 287 1 320 253 13 13 chr9 86595422 86595501 -55675943 + MER21B LTR ERV1 15 93 -770 2390 242 96 30 chr9 86595520 86596312 -55675132 + MER21B LTR ERV1 19 862 -1 254 289 92 54 chr9 86597178 86597438 -55674006 + L1M1 LINE L1 5068 5337 -2228 24 77 0 0 chr9 86597450 86597502 -55673942 + AT_rich Low_complexity Low_complexity 1 52 0 410 317 180 3 chr9 86597676 86597982 -55673462 + L1M1 LINE L1 5652 6011 -1554 451 262 114 71 chr9 86598701 86599194 -55672250 + L1ME4a LINE L1 5605 6118 -3 622 245 97 46 chr9 86599239 86599631 -55671813 + L1ME4a LINE L1 5675 6086 -35 22 0 0 0 chr9 86600041 86600063 -55671381 + AT_rich Low_complexity Low_complexity 1 22 0 1816 221 34 86 chr9 86601058 86601371 -55670073 + L1M4 LINE L1 3170 3498 -2648 1882 151 24 0 chr9 86601371 86601662 -55669782 + AluSx SINE Alu 1 298 -14 1816 221 34 86 chr9 86601662 86602117 -55669327 + L1M4 LINE L1 3498 3898 -2248 24 0 0 0 chr9 86602778 86602802 -55668642 + AT_rich Low_complexity Low_complexity 1 24 0 220 269 19 0 chr9 86603159 86603211 -55668233 - L2 LINE L2 0 3272 3220 1874 138 0 35 chr9 86603542 86603853 -55667591 + AluSx SINE Alu 1 300 -12 31 26 0 0 chr9 86604477 86604515 -55666929 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr9 86605997 86606033 -55665411 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 86606318 86606339 -55665105 + AT_rich Low_complexity Low_complexity 1 21 0 446 276 140 51 chr9 86606487 86606780 -55664664 - MER102b DNA MER1_type -21 320 2 2278 84 0 13 chr9 86606886 86607185 -55664259 + AluSg SINE Alu 1 295 -15 517 269 111 6 chr9 86607679 86607850 -55663594 + MIR SINE MIR 2 190 -72 863 237 62 125 chr9 86608320 86608881 -55662563 - L1MC4a LINE L1 -686 5470 5366 2110 114 0 0 chr9 86609018 86609308 -55662136 + AluY SINE Alu 2 291 -20 192 40 0 0 chr9 86609313 86609338 -55662106 + (T)n Simple_repeat Simple_repeat 1 25 0 295 234 0 13 chr9 86609347 86609424 -55662020 + L1ME4a LINE L1 5965 6040 -81 24 0 0 0 chr9 86609497 86609521 -55661923 + AT_rich Low_complexity Low_complexity 1 24 0 1279 206 80 40 chr9 86610082 86610407 -55661037 - MER58B DNA MER1_type 0 341 4 306 262 64 14 chr9 86610418 86610559 -55660885 + MER112 DNA MER1_type 2 149 -111 235 321 28 55 chr9 86610601 86610710 -55660734 - MIR3 SINE MIR -50 158 53 2282 162 25 21 chr9 86611007 86611438 -55660006 + Tigger2a DNA MER2_type 1 433 -1 21 36 0 0 chr9 86611527 86611555 -55659889 + AT_rich Low_complexity Low_complexity 1 28 0 1941 144 0 13 chr9 86612115 86612428 -55659016 - AluSc SINE Alu 0 309 1 224 135 0 19 chr9 86613768 86613820 -55657624 + (CTTA)n Simple_repeat Simple_repeat 1 51 0 398 109 0 0 chr9 86613820 86613875 -55657569 - Alu SINE Alu -10 290 236 342 0 0 0 chr9 86613875 86613913 -55657531 + (ATTG)n Simple_repeat Simple_repeat 4 41 0 1899 151 0 0 chr9 86613913 86614191 -55657253 - AluSx SINE Alu -32 280 3 611 349 77 35 chr9 86614209 86614999 -55656445 - ERVL LTR ERVL -461 5303 4481 1106 102 97 29 chr9 86615479 86615685 -55655759 - L1MA3 LINE L1 0 6305 6086 498 266 116 107 chr9 86617116 86617323 -55654121 - L2 LINE L2 -16 3297 3093 2255 98 3 10 chr9 86617323 86617630 -55653814 + AluSx SINE Alu 1 305 -7 498 266 116 107 chr9 86617630 86618008 -55653436 - L2 LINE L2 -220 3093 2692 557 299 63 61 chr9 86618095 86618490 -55652954 - L1ME LINE L1 -370 5751 5356 312 341 84 95 chr9 86618872 86619432 -55652012 + L1MEd LINE L1 427 980 -5550 2147 100 13 3 chr9 86619669 86619970 -55651474 - AluSc SINE Alu -5 304 1 579 317 44 3 chr9 86619970 86620263 -55651181 + L1MEd LINE L1 1363 1667 -4863 1732 223 60 44 chr9 86620351 86620454 -55650990 + L1ME2 LINE L1 5585 5685 -649 2264 106 0 3 chr9 86620454 86620756 -55650688 - AluSq SINE Alu -12 301 1 1732 223 60 44 chr9 86620756 86621233 -55650211 + L1ME2 LINE L1 5685 6331 -3 265 233 158 37 chr9 86621836 86622051 -55649393 + L1MEd LINE L1 2433 2646 -3894 527 246 80 89 chr9 86622097 86622738 -55648706 + L1MEd LINE L1 2773 3407 -3133 354 156 0 0 chr9 86622749 86622813 -55648631 + (CA)n Simple_repeat Simple_repeat 1 64 0 230 208 0 0 chr9 86623005 86623058 -55648386 + HAL1 LINE L1 2451 2503 -4 1132 226 73 0 chr9 86624277 86624525 -55646919 + Tigger7 DNA MER2_type 2 267 -466 547 93 139 0 chr9 86624524 86624610 -55646834 + Tigger7 DNA MER2_type 2390 2487 0 * 1957 135 7 10 chr9 86625114 86625411 -55646033 - AluSx SINE Alu -15 297 2 183 236 36 55 chr9 86625525 86625580 -55645864 - MIR3 SINE MIR -23 185 132 2109 102 0 17 chr9 86625751 86626045 -55645399 - AluSc SINE Alu -20 289 1 641 301 64 20 chr9 86626675 86626924 -55644520 - MIR SINE MIR -1 261 2 519 254 183 33 chr9 86628412 86628625 -55642819 + MIR SINE MIR 3 247 -15 467 207 27 9 chr9 86628733 86628844 -55642600 + L1MC4 LINE L1 7549 7661 -381 225 345 22 86 chr9 86630191 86630248 -55641196 - L2 LINE L2 -34 3238 3179 1250 157 0 58 chr9 86630248 86630409 -55641035 + MER30 DNA MER1_type 3 147 -83 2355 85 3 0 chr9 86630409 86630704 -55640740 + AluSp SINE Alu 1 296 -17 1250 157 0 58 chr9 86630704 86630784 -55640660 + MER30 DNA MER1_type 147 230 0 225 345 22 86 chr9 86630784 86630865 -55640579 - L2 LINE L2 -93 3179 3109 760 265 60 10 chr9 86631470 86631670 -55639774 + MIR SINE MIR 23 232 -30 2454 60 0 0 chr9 86631949 86632248 -55639196 + AluY SINE Alu 6 304 -7 322 244 0 12 chr9 86632573 86632655 -55638789 + L1MC/D LINE L1 5714 5794 -2014 578 320 119 14 chr9 86632900 86633397 -55638047 - L1M4 LINE L1 -1905 4241 3693 198 103 0 0 chr9 86633451 86633480 -55637964 + (T)n Simple_repeat Simple_repeat 1 29 0 2021 188 53 14 chr9 86633661 86634076 -55637368 + Tigger2a DNA MER2_type 1 431 -3 308 260 48 14 chr9 86634383 86634529 -55636915 - L1M4 LINE L1 -3849 2297 2147 370 365 78 14 chr9 86634904 86635186 -55636258 - HAL1b LINE L1 -585 763 464 271 292 90 0 chr9 86635230 86635319 -55636125 - L2 LINE L2 0 3272 3176 3132 203 50 56 chr9 86635319 86635642 -55635802 + MER21B LTR ERV1 6 329 -534 2248 91 0 10 chr9 86635642 86635939 -55635505 + AluSc SINE Alu 1 294 -15 3132 203 50 56 chr9 86635939 86636407 -55635037 + MER21B LTR ERV1 329 793 -70 506 160 0 10 chr9 86636543 86636643 -55634801 + FLAM_A SINE Alu 8 106 -36 2234 104 0 7 chr9 86637974 86638283 -55633161 + AluSx SINE Alu 1 307 -5 2431 78 0 0 chr9 86639232 86639540 -55631904 - AluY SINE Alu -3 308 1 456 325 92 33 chr9 86639805 86640045 -55631399 + L3 LINE CR1 1170 1423 -154 1817 18 0 5 chr9 86640391 86640608 -55630836 + L1PA2 LINE L1 5940 6155 0 29 47 0 0 chr9 86641795 86641838 -55629606 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr9 86645790 86645827 -55625617 + AT_rich Low_complexity Low_complexity 1 37 0 181 308 0 31 chr9 86646032 86646097 -55625347 - MIR SINE MIR -34 228 166 2994 218 69 39 chr9 86646234 86647074 -55624370 + L1MEc LINE L1 37 901 -5495 1329 231 32 72 chr9 86647169 86647685 -55623759 + L1ME1 LINE L1 5609 6254 -80 949 175 50 58 chr9 86647685 86647925 -55623519 + ORSL DNA AcHobo 1 238 -37 248 244 23 12 chr9 86647942 86648028 -55623416 + L1MA10 LINE L1 6246 6332 -2 2177 187 28 15 chr9 86648476 86648937 -55622507 + MLT1C LTR MaLR 1 467 0 26 0 0 0 chr9 86650186 86650212 -55621232 + AT_rich Low_complexity Low_complexity 1 26 0 571 270 107 10 chr9 86650337 86650533 -55620911 - MIR SINE MIR -37 225 11 742 247 74 103 chr9 86650782 86651637 -55619807 + L1MC5 LINE L1 7087 7916 -45 285 246 17 34 chr9 86651649 86651767 -55619677 + L1MC5 LINE L1 7538 7653 -308 769 168 0 0 chr9 86651767 86651892 -55619552 + FRAM SINE Alu 38 162 -14 226 250 134 0 chr9 86651901 86652013 -55619431 + L1MC5 LINE L1 7660 7786 -175 302 253 20 61 chr9 86652616 86652715 -55618729 - MIR3 SINE MIR -2 206 112 254 350 73 73 chr9 86653147 86653407 -55618037 - L2 LINE L2 -47 3225 2966 693 218 0 0 chr9 86653858 86653982 -55617462 + FLAM_A SINE Alu 2 125 -8 1509 192 7 21 chr9 86654229 86654515 -55616929 - AluJo SINE Alu -25 287 6 428 268 64 55 chr9 86654542 86654777 -55616667 - L1M4 LINE L1 -2952 3194 2958 238 286 26 0 chr9 86654777 86654854 -55616590 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 2102 124 7 0 chr9 86655347 86655637 -55615807 - AluSx SINE Alu -14 298 7 2151 121 0 6 chr9 86655995 86656309 -55615135 - AluSx SINE Alu 0 312 1 23 68 0 0 chr9 86656355 86656399 -55615045 + AT_rich Low_complexity Low_complexity 1 44 0 21 71 0 0 chr9 86656413 86656455 -55614989 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr9 86656706 86656737 -55614707 + AT_rich Low_complexity Low_complexity 1 31 0 886 182 33 6 chr9 86656905 86657086 -55614358 + L1PB4 LINE L1 5969 6154 -2 2357 76 0 10 chr9 86657113 86657415 -55614029 + AluY SINE Alu 1 299 -12 2236 102 0 3 chr9 86658175 86658470 -55612974 - AluSg SINE Alu -16 294 1 2224 95 0 3 chr9 86659018 86659313 -55612131 + AluSc SINE Alu 1 294 -15 5831 154 27 6 chr9 86659379 86660605 -55610839 + L1MA4 LINE L1 5042 6294 -6 39 50 0 0 chr9 86660858 86660918 -55610526 + AT_rich Low_complexity Low_complexity 1 60 0 1985 122 0 3 chr9 86660995 86661281 -55610163 + AluSq SINE Alu 1 285 -28 909 238 92 42 chr9 86662171 86662507 -55608937 - L1MC4a LINE L1 -1961 5847 5495 2435 76 0 3 chr9 86662679 86662982 -55608462 - AluY SINE Alu -9 302 1 405 255 73 67 chr9 86663365 86663576 -55607868 - L1MC4a LINE L1 -1314 4832 4617 2294 125 0 0 chr9 86663576 86663888 -55607556 + AluSx SINE Alu 1 312 0 405 255 73 67 chr9 86663888 86663990 -55607454 - L1MC4a LINE L1 -1529 4617 4517 198 222 0 0 chr9 86664411 86664465 -55606979 + (TATG)n Simple_repeat Simple_repeat 2 55 0 2349 99 0 0 chr9 86665020 86665322 -55606122 - AluSg SINE Alu -8 302 1 225 0 0 0 chr9 86665447 86665472 -55605972 + (A)n Simple_repeat Simple_repeat 1 25 0 193 344 93 40 chr9 86666768 86667091 -55604353 + L2 LINE L2 567 906 -2408 249 309 209 19 chr9 86667651 86667971 -55603473 + L2 LINE L2 1545 1925 -1389 1802 270 88 38 chr9 86668109 86668607 -55602837 + L1MEc LINE L1 905 1376 -4839 183 42 0 0 chr9 86668607 86668631 -55602813 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1802 270 88 38 chr9 86668631 86669706 -55601738 + L1MEc LINE L1 1376 2532 -3683 413 235 157 22 chr9 86669843 86670073 -55601371 + L1MEc LINE L1 1822 2082 -4314 3809 231 67 17 chr9 86670105 86671082 -55600362 + L1MEc LINE L1 2126 3052 -3163 2411 83 3 10 chr9 86671082 86671395 -55600049 + AluSq SINE Alu 1 311 -2 3809 231 67 17 chr9 86671395 86671550 -55599894 + L1MEc LINE L1 3052 3198 -3017 825 190 44 93 chr9 86671550 86671776 -55599668 - MER20 DNA MER1_type -1 218 4 3809 231 67 17 chr9 86671776 86671922 -55599522 + L1MEc LINE L1 3198 3463 -2752 664 196 146 0 chr9 86672424 86672582 -55598862 + MER58B DNA MER1_type 161 341 0 227 250 47 0 chr9 86672623 86672687 -55598757 - MER5B DNA MER1_type -74 104 38 721 274 59 73 chr9 86672700 86672887 -55598557 - L1ME LINE L1 -298 5823 5635 2094 125 3 16 chr9 86672887 86673200 -55598244 + AluSx SINE Alu 1 309 -3 198 0 0 0 chr9 86673200 86673222 -55598222 + (TA)n Simple_repeat Simple_repeat 2 23 0 721 274 59 73 chr9 86673222 86673511 -55597933 - L1ME LINE L1 -484 5637 5353 29 28 0 0 chr9 86674688 86674724 -55596720 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr9 86674811 86674841 -55596603 + (TG)n Simple_repeat Simple_repeat 2 31 0 308 304 163 22 chr9 86675147 86675331 -55596113 - MIR SINE MIR 0 262 53 2307 90 7 7 chr9 86675547 86675848 -55595596 - AluSg SINE Alu -9 301 1 332 278 110 34 chr9 86676344 86676607 -55594837 + L2 LINE L2 1227 1509 -1805 * 1109 269 62 37 chr9 86676606 86676632 -55594812 - L2 LINE L2 -4 3309 3285 2075 112 17 7 chr9 86676632 86676928 -55594516 + AluSx SINE Alu 1 299 -13 1109 269 62 37 chr9 86676928 86677522 -55593922 - L2 LINE L2 -28 3285 2672 463 288 249 10 chr9 86677797 86678415 -55593029 + L2 LINE L2 1919 2684 -630 624 166 79 0 chr9 86678417 86678556 -55592888 - L1MD2 LINE L1 0 6359 6210 1513 195 47 51 chr9 86678695 86679143 -55592301 + Charlie1a DNA MER1_type 32 533 -2228 2244 132 0 0 chr9 86679143 86679454 -55591990 - AluSx SINE Alu -1 311 1 1513 195 47 51 chr9 86679454 86679608 -55591836 + Charlie1a DNA MER1_type 533 686 -769 408 133 0 0 chr9 86679717 86679777 -55591667 + AluS SINE Alu 233 292 -17 1185 136 70 26 chr9 86679802 86680030 -55591414 + Charlie1a DNA MER1_type 784 1021 -434 1383 151 48 122 chr9 86680176 86680538 -55590906 + Charlie1a DNA MER1_type 1008 1327 -1434 2637 58 0 0 chr9 86680538 86680849 -55590595 - AluY SINE Alu 0 311 1 1383 151 48 122 chr9 86680849 86680969 -55590475 + Charlie1a DNA MER1_type 1327 1454 -1 252 135 19 39 chr9 86681005 86681057 -55590387 - L1MC5 LINE L1 -1223 6738 6688 2368 59 0 3 chr9 86681777 86682066 -55589378 - AluY SINE Alu 0 311 24 606 231 15 15 chr9 86682249 86682379 -55589065 - FLAM_A SINE Alu -3 130 1 1488 194 127 17 chr9 86682903 86683306 -55588138 - Charlie1b DNA MER1_type -76 447 1 976 269 86 24 chr9 86683306 86683676 -55587768 - MLT1I LTR MaLR -16 393 1 425 318 99 10 chr9 86683676 86683868 -55587576 + MLT1J LTR MaLR 130 338 -173 2165 113 20 0 chr9 86684015 86684308 -55587136 - AluSx SINE Alu -13 299 1 2373 102 0 6 chr9 86684312 86684626 -55586818 - AluSx SINE Alu 0 312 1 314 70 18 18 chr9 86684798 86684855 -55586589 - L1MA5 LINE L1 -304 5996 5940 1240 329 102 31 chr9 86686403 86687166 -55584278 - L2 LINE L2 -609 2705 1889 2789 266 80 21 chr9 86687189 86688484 -55582960 + L1MEc LINE L1 174 1353 -4862 665 176 0 44 chr9 86688492 86688628 -55582816 + FLAM_C SINE Alu 2 131 -2 1200 215 77 61 chr9 86688664 86688787 -55582657 + L1MEc LINE L1 1831 1951 -4445 2477 61 0 10 chr9 86688787 86689084 -55582360 - AluY SINE Alu -15 296 3 1200 215 77 61 chr9 86689084 86689327 -55582117 + L1MEc LINE L1 1951 2189 -4207 2169 120 3 3 chr9 86689327 86689636 -55581808 + AluSg1 SINE Alu 1 309 0 1200 215 77 61 chr9 86689636 86689685 -55581759 + L1MEc LINE L1 2189 2236 -4160 2301 79 0 20 chr9 86689685 86689988 -55581456 + AluY SINE Alu 1 297 -14 1200 215 77 61 chr9 86689988 86690156 -55581288 + L1MEc LINE L1 2236 2425 -3971 1760 242 57 3 chr9 86690160 86690756 -55580688 + L1MEc LINE L1 2867 3494 -2721 2260 174 40 87 chr9 86690774 86690926 -55580518 - MLT1D LTR MaLR -1 504 346 1821 80 0 0 chr9 86690926 86691165 -55580279 + L1PA7 LINE L1 5909 6147 -7 2260 174 40 87 chr9 86691165 86691541 -55579903 - MLT1D LTR MaLR -159 346 1 2165 219 55 44 chr9 86691542 86691627 -55579817 + L1MEc LINE L1 3483 3566 -2649 2161 108 16 0 chr9 86691627 86691932 -55579512 - AluSx SINE Alu -2 310 1 2165 219 55 44 chr9 86691932 86692534 -55578910 + L1MEc LINE L1 3566 4178 -2037 479 355 78 18 chr9 86692592 86692927 -55578517 - L2 LINE L2 -2186 1128 774 240 59 0 0 chr9 86693773 86693807 -55577637 + (CAA)n Simple_repeat Simple_repeat 3 36 0 275 333 31 0 chr9 86694279 86694375 -55577069 - MIR SINE MIR -72 190 92 2359 104 0 0 chr9 86694527 86694836 -55576608 - AluSx SINE Alu -3 309 1 1486 174 53 18 chr9 86694837 86695078 -55576366 - MER58B DNA MER1_type -2090 330 76 2289 93 3 3 chr9 86695078 86695378 -55576066 + AluSq SINE Alu 1 300 -13 1486 174 53 18 chr9 86695378 86695417 -55576027 - MER58B DNA MER1_type -2344 76 40 2221 103 0 0 chr9 86696345 86696655 -55574789 + AluSq SINE Alu 1 310 0 2215 117 3 0 chr9 86698061 86698369 -55573075 + AluSx SINE Alu 1 309 -3 476 289 44 0 chr9 86698869 86699004 -55572440 - L2 LINE L2 -2155 1159 1019 * 2801 216 221 38 chr9 86699003 86700290 -55571154 + L2 LINE L2 1624 3146 -167 1809 179 7 0 chr9 86700318 86700619 -55570825 + AluJo SINE Alu 1 303 -9 805 162 7 14 chr9 86700633 86700775 -55570669 + MLT1A1 LTR MaLR 1 141 -224 37085 89 12 12 chr9 86700776 86706923 -55564521 - L1PA6 LINE L1 0 6154 5 1239 165 20 56 chr9 86706923 86707101 -55564343 + MLT1A1 LTR MaLR 126 294 -71 2173 136 0 0 chr9 86707101 86707410 -55564034 + AluSx SINE Alu 1 309 -3 1239 165 20 56 chr9 86707410 86707480 -55563964 + MLT1A1 LTR MaLR 294 365 0 504 216 52 22 chr9 86707829 86707963 -55563481 + L2 LINE L2 3176 3313 0 3198 226 102 44 chr9 86708401 86708724 -55562720 + Charlie6 DNA MER1_type 76 379 -3121 1896 172 3 10 chr9 86708724 86708860 -55562584 + AluJo SINE Alu 1 136 -176 2241 94 0 35 chr9 86708860 86709179 -55562265 + AluSx SINE Alu 1 308 -4 1896 172 3 10 chr9 86709179 86709356 -55562088 + AluJo SINE Alu 136 312 0 3198 226 102 44 chr9 86709356 86710087 -55561357 + Charlie6 DNA MER1_type 379 1192 -2308 312 170 0 0 chr9 86710091 86710144 -55561300 + Tigger4(Zombi) DNA MER2_type 1 53 -2678 2098 117 10 0 chr9 86710144 86710435 -55561009 + AluSx SINE Alu 1 294 -18 4150 196 84 66 chr9 86710447 86710829 -55560615 + Charlie6 DNA MER1_type 1568 1942 -1558 1399 183 49 46 chr9 86710829 86711114 -55560330 + AluJo SINE Alu 1 286 -26 4150 196 84 66 chr9 86711114 86711127 -55560317 + Charlie6 DNA MER1_type 1942 1953 -1547 423 0 0 0 chr9 86711127 86711174 -55560270 + (CA)n Simple_repeat Simple_repeat 2 48 0 4150 196 84 66 chr9 86711174 86712006 -55559438 + Charlie6 DNA MER1_type 1953 2818 -682 299 99 0 277 chr9 86712009 86712110 -55559334 + MADE1 DNA Mariner 8 80 0 868 207 42 5 chr9 86712117 86712310 -55559134 + L1MB4 LINE L1 4753 4952 -1194 858 169 28 6 chr9 86712309 86712486 -55558958 + L1MB4 LINE L1 5703 5883 -297 * 1388 155 55 49 chr9 86712475 86712970 -55558474 + L1M2 LINE L1 4993 5484 -743 310 164 18 0 chr9 86712971 86713026 -55558418 + Charlie6 DNA MER1_type 3445 3500 0 1986 206 194 48 chr9 86713349 86714018 -55557426 + LTR41 LTR ERVL 1 767 -6 185 238 48 48 chr9 86714198 86714261 -55557183 + MER5B DNA MER1_type 115 177 -1 913 136 19 13 chr9 86714357 86714511 -55556933 + L1M4 LINE L1 5432 5586 -588 1635 180 42 7 chr9 86714557 86714846 -55556598 - AluJo SINE Alu -13 299 1 1723 91 0 0 chr9 86715307 86715528 -55555916 - AluY SINE Alu -8 303 83 4616 224 48 22 chr9 86715659 86717068 -55554376 + L1M4c LINE L1 2300 3756 -2626 2315 84 0 3 chr9 86717068 86717367 -55554077 + AluSc SINE Alu 1 298 -11 4616 224 48 22 chr9 86717367 86717625 -55553819 + L1M4c LINE L1 3756 4006 -2376 3548 153 49 50 chr9 86717627 86717887 -55553557 + L1MB3 LINE L1 5418 5677 -506 1675 139 4 26 chr9 86717887 86718160 -55553284 + AluY SINE Alu 40 306 -5 3548 153 49 50 chr9 86718160 86718659 -55552785 + L1MB3 LINE L1 5677 6176 -7 23 0 0 0 chr9 86718659 86718682 -55552762 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 86718854 86718875 -55552569 + AT_rich Low_complexity Low_complexity 1 21 0 1175 148 95 15 chr9 86719398 86719662 -55551782 - L1MA5A LINE L1 -4 6293 6009 374 256 22 0 chr9 86719753 86719843 -55551601 + Charlie1 DNA MER1_type 1 92 -2669 2237 104 0 0 chr9 86719933 86720232 -55551212 + AluY SINE Alu 13 311 0 3960 171 101 37 chr9 86720232 86721353 -55550091 + Charlie1 DNA MER1_type 1564 2756 -5 564 247 30 64 chr9 86722003 86722270 -55549174 - MIR SINE MIR 0 262 5 2313 83 3 0 chr9 86722518 86722819 -55548625 + AluSq SINE Alu 1 302 -11 2009 116 38 3 chr9 86722823 86723116 -55548328 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr9 86724450 86724479 -55546965 + GC_rich Low_complexity Low_complexity 1 29 0 276 120 0 0 chr9 86724990 86725040 -55546404 + (CGG)n Simple_repeat Simple_repeat 2 51 0 1748 169 6 22 chr9 86726964 86727277 -55544167 - AluJo SINE Alu 0 312 5 1906 141 77 7 chr9 86727491 86727908 -55543536 - MER61D LTR ERV1 0 501 1 205 229 0 21 chr9 86728434 86728482 -55542962 - MIR SINE MIR -3 259 213 474 134 0 0 chr9 86728767 86728834 -55542610 + AluJo SINE Alu 1 67 -245 3050 160 25 38 chr9 86728835 86729447 -55541997 + LTR9 LTR ERV1 1 604 -8 1437 153 4 29 chr9 86729451 86729693 -55541751 + AluJo SINE Alu 60 295 -17 882 135 130 48 chr9 86729728 86729921 -55541523 + L1MA9 LINE L1 6059 6271 -41 1713 167 38 11 chr9 86729921 86730208 -55541236 - AluJo SINE Alu -17 295 1 882 135 130 48 chr9 86730208 86730221 -55541223 + L1MA9 LINE L1 6271 6282 -30 * 1795 230 32 8 chr9 86730218 86730713 -55540731 - L1M4 LINE L1 -1280 4866 4360 246 160 0 0 chr9 86730854 86730904 -55540540 + (TAA)n Simple_repeat Simple_repeat 1 50 0 847 291 154 42 chr9 86731046 86731817 -55539627 + L2 LINE L2 1728 2585 -729 1948 162 27 0 chr9 86732049 86732346 -55539098 - AluJo SINE Alu -7 305 1 577 188 90 35 chr9 86732698 86732842 -55538602 + MIR SINE MIR 83 234 -28 2120 105 0 4 chr9 86732937 86733214 -55538230 - AluY SINE Alu -16 295 20 998 156 156 30 chr9 86734317 86734586 -55536858 - MER5C DNA MER1_type 0 324 22 2031 96 33 0 chr9 86734665 86734957 -55536487 - AluSx SINE Alu 0 301 1 440 159 14 0 chr9 86735128 86735197 -55536247 - AluJ/FLAM SINE Alu -215 97 28 579 182 112 48 chr9 86736785 86736972 -55534472 + MER105 DNA DNA 3 201 -3 2096 130 3 3 chr9 86737617 86737918 -55533526 - AluSq SINE Alu -12 301 1 932 230 168 40 chr9 86738301 86739285 -55532159 - HAL1 LINE L1 -34 2473 1337 195 191 0 0 chr9 86739332 86739400 -55532044 + (TA)n Simple_repeat Simple_repeat 1 68 0 25637 35 3 2 chr9 86739400 86743289 -55528155 - L1PA5 LINE L1 -18 6136 2244 647 266 164 7 chr9 86743315 86743513 -55527931 - HAL1 LINE L1 -1198 1309 1143 2139 107 3 0 chr9 86743513 86743803 -55527641 - AluSq SINE Alu -22 291 1 647 266 164 7 chr9 86743803 86744044 -55527400 - HAL1 LINE L1 -1364 1143 801 300 326 54 0 chr9 86744121 86744250 -55527194 - HAL1 LINE L1 -1832 675 540 345 278 59 71 chr9 86744565 86744734 -55526710 - HAL1 LINE L1 -2256 251 85 2235 138 28 105 chr9 86744736 86744801 -55526643 - L1MB8 LINE L1 -5 6173 6105 1981 110 0 0 chr9 86744801 86745056 -55526388 + AluSg SINE Alu 1 255 -55 2235 138 28 105 chr9 86745056 86745570 -55525874 - L1MB8 LINE L1 -73 6105 5639 456 139 0 0 chr9 86745579 86745658 -55525786 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 992 177 15 20 chr9 86745675 86745878 -55525566 - L1MB8 LINE L1 -533 5645 5444 22 0 0 0 chr9 86746096 86746118 -55525326 + AT_rich Low_complexity Low_complexity 1 22 0 206 250 0 0 chr9 86746314 86746358 -55525086 + L3b LINE CR1 1187 1230 -353 348 265 98 38 chr9 86746455 86746587 -55524857 + L2 LINE L2 3133 3272 0 29 47 0 0 chr9 86746698 86746741 -55524703 + AT_rich Low_complexity Low_complexity 1 43 0 2235 77 32 0 chr9 86747684 86747969 -55523475 + AluY SINE Alu 1 294 -17 568 170 54 0 chr9 86748157 86748269 -55523175 + L1PA16 LINE L1 6049 6166 0 465 19 0 0 chr9 86748358 86748412 -55523032 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2100 90 8 0 chr9 86748412 86748679 -55522765 - AluSq SINE Alu -29 284 16 693 97 97 0 chr9 86748927 86749030 -55522414 - FRAM SINE Alu -7 169 57 1633 191 0 48 chr9 86749126 86749441 -55522003 - AluJo SINE Alu -12 300 1 697 87 0 10 chr9 86749445 86749548 -55521896 - L1MA5A LINE L1 -5 6292 6191 1690 131 4 35 chr9 86749918 86750178 -55521266 - AluSx SINE Alu -19 293 42 2225 99 23 7 chr9 86750760 86751062 -55520382 + AluSx SINE Alu 1 307 -5 253 221 26 39 chr9 86751580 86751657 -55519787 - MER63 DNA MER1_type -325 737 660 2433 59 10 13 chr9 86752336 86752640 -55518804 - AluSp SINE Alu -10 303 1 2291 96 0 13 chr9 86752690 86752992 -55518452 - AluY SINE Alu -13 298 1 213 39 0 0 chr9 86753376 86753402 -55518042 + (TG)n Simple_repeat Simple_repeat 1 26 0 5651 209 29 4 chr9 86753402 86754783 -55516661 - L1 LINE L1 -1752 4394 2979 1164 272 38 2 chr9 86754783 86755177 -55516267 + L1 LINE L1 2593 3000 -3146 431 290 77 16 chr9 86755179 86755427 -55516017 + LTR33 LTR ERVL 221 483 -38 2177 103 3 13 chr9 86755428 86755728 -55515716 + AluSx SINE Alu 16 312 0 385 236 9 82 chr9 86755884 86755994 -55515450 - L2 LINE L2 -10 3303 3202 238 191 0 0 chr9 86755995 86756042 -55515402 - MLT1A1 LTR MaLR 0 365 319 6329 52 0 6 chr9 86756800 86757590 -55513854 + L1PA5 LINE L1 5370 6154 0 2259 101 7 0 chr9 86757606 86757914 -55513530 + AluSp SINE Alu 1 310 -3 275 218 0 182 chr9 86757916 86758026 -55513418 - MIR3 SINE MIR -36 172 83 321 263 53 14 chr9 86758393 86758508 -55512936 + MIR SINE MIR 73 197 -11 2278 86 17 0 chr9 86758663 86758953 -55512491 + AluSg SINE Alu 1 295 -15 271 163 0 150 chr9 86759964 86760044 -55511400 - AluJo SINE Alu -119 183 116 1137 143 0 0 chr9 86760773 86760934 -55510510 + AluJb SINE Alu 138 298 -14 1311 128 0 6 chr9 86762162 86762342 -55509102 + AluSg SINE Alu 1 179 -131 823 219 53 0 chr9 86762464 86762615 -55508829 - AluJo SINE Alu -153 159 1 22 35 0 0 chr9 86763265 86763294 -55508150 + AT_rich Low_complexity Low_complexity 1 29 0 365 271 25 30 chr9 86765892 86766145 -55505299 + GA-rich Low_complexity Low_complexity 1 251 0 202 71 54 36 chr9 86766200 86766256 -55505188 + GA-rich Low_complexity Low_complexity 3 59 0 219 353 20 0 chr9 86766276 86766378 -55505066 + A-rich Low_complexity Low_complexity 3 106 0 1854 279 72 7 chr9 86766568 86767279 -55504165 + HAL1 LINE L1 658 1414 -1093 2480 46 10 10 chr9 86767372 86767674 -55503770 + AluY SINE Alu 1 302 -9 24 0 0 0 chr9 86768220 86768244 -55503200 + AT_rich Low_complexity Low_complexity 1 24 0 50 0 0 0 chr9 86768383 86768433 -55503011 + AT_rich Low_complexity Low_complexity 1 50 0 2220 99 3 3 chr9 86769281 86769574 -55501870 + AluSq SINE Alu 1 293 -20 243 204 85 9 chr9 86769664 86769745 -55501699 - MIR SINE MIR -55 153 63 2122 101 40 3 chr9 86770674 86770972 -55500472 - AluSq SINE Alu -3 310 2 359 300 73 0 chr9 86771215 86771325 -55500119 + MIR SINE MIR 24 141 -121 210 241 112 94 chr9 86771360 86771464 -55499980 + MER5A DNA MER1_type 17 127 -62 1016 173 0 0 chr9 86771464 86771620 -55499824 - FRAM SINE Alu -10 156 1 210 241 112 94 chr9 86771620 86771685 -55499759 + MER5A DNA MER1_type 127 189 0 322 253 78 71 chr9 86771918 86772072 -55499372 - Charlie8 DNA MER1_type -2262 155 1 2537 46 0 10 chr9 86772099 86772401 -55499043 + AluY SINE Alu 1 299 -12 1286 101 18 0 chr9 86772401 86772569 -55498875 + AluSg/x SINE Alu 134 304 -8 248 194 65 0 chr9 86772736 86772798 -55498646 - AluSq/x SINE Alu -182 121 56 1632 140 19 39 chr9 86772821 86772864 -55498580 + L1PA16 LINE L1 5856 5898 -268 300 53 0 0 chr9 86772864 86772902 -55498542 + (CA)n Simple_repeat Simple_repeat 2 39 0 1632 140 19 39 chr9 86772902 86773166 -55498278 + L1PA16 LINE L1 5898 6157 -9 2072 181 80 99 chr9 86773616 86773948 -55497496 - L1MC5 LINE L1 -53 7908 7571 339 65 0 0 chr9 86773948 86773994 -55497450 + (TG)n Simple_repeat Simple_repeat 2 47 0 2072 181 80 99 chr9 86773994 86774005 -55497439 - L1MC5 LINE L1 -390 7571 7561 2228 67 0 8 chr9 86774005 86774272 -55497172 - AluSq SINE Alu -48 265 1 2072 181 80 99 chr9 86774272 86774446 -55496998 - L1MC5 LINE L1 -400 7561 7385 1716 195 0 3 chr9 86774446 86774749 -55496695 - AluJo SINE Alu -4 308 7 2072 181 80 99 chr9 86774749 86774914 -55496530 - L1MC5 LINE L1 -576 7385 7218 294 29 0 0 chr9 86774914 86774949 -55496495 + (TG)n Simple_repeat Simple_repeat 2 36 0 2072 181 80 99 chr9 86774949 86775271 -55496173 - L1MC5 LINE L1 -743 7218 6920 660 202 4 103 chr9 86775281 86775514 -55495930 - L1MC5 LINE L1 -1025 6936 6727 310 258 22 45 chr9 86775526 86775615 -55495829 + L1MC5 LINE L1 6642 6808 -1234 648 254 188 43 chr9 86775660 86776129 -55495315 + MLT1H LTR MaLR 13 549 0 23 54 0 0 chr9 86776129 86776166 -55495278 + AT_rich Low_complexity Low_complexity 1 37 0 4342 79 48 3 chr9 86776177 86776784 -55494660 - L1PA10 LINE L1 -16 6152 5519 318 293 226 0 chr9 86778976 86779140 -55492304 - MIR SINE MIR -1 261 61 1907 162 3 0 chr9 86779165 86779455 -55491989 - AluSx SINE Alu -21 291 1 564 130 0 10 chr9 86779642 86779742 -55491702 + L1MA2 LINE L1 6206 6304 0 2142 122 0 0 chr9 86779751 86780038 -55491406 - AluSx SINE Alu -25 287 1 32 0 0 0 chr9 86780039 86780071 -55491373 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr9 86780225 86780260 -55491184 + (CA)n Simple_repeat Simple_repeat 2 36 0 1116 291 85 67 chr9 86780424 86781234 -55490210 + HAL1 LINE L1 1 825 -1682 1870 160 3 7 chr9 86781250 86781537 -55489907 + AluJo SINE Alu 1 286 -26 634 139 0 117 chr9 86781555 86781629 -55489815 - FLAM_A SINE Alu -189 122 69 4486 60 33 0 chr9 86781629 86782228 -55489216 + L1PA6 LINE L1 5547 6164 0 634 139 0 117 chr9 86782228 86782289 -55489155 - FLAM_A SINE Alu -242 69 2 309 297 10 0 chr9 86782295 86782396 -55489048 + HAL1 LINE L1 816 917 -1590 2092 102 3 3 chr9 86782423 86782708 -55488736 + AluSq SINE Alu 24 308 -5 1019 238 50 69 chr9 86782764 86782866 -55488578 + HAL1 LINE L1 1654 1756 -751 1947 151 3 31 chr9 86782866 86783185 -55488259 + AluSx SINE Alu 1 310 -2 1019 238 50 69 chr9 86783185 86783244 -55488200 + HAL1 LINE L1 1756 1815 -692 1300 71 162 0 chr9 86783244 86783442 -55488002 - MER30 DNA MER1_type 0 230 1 1019 238 50 69 chr9 86783442 86783658 -55487786 + HAL1 LINE L1 1815 2025 -482 666 172 17 9 chr9 86783661 86783777 -55487667 + FLAM_C SINE Alu 3 119 -24 591 239 61 14 chr9 86783957 86784170 -55487274 + Tigger3(Golem) DNA MER2_type 2804 3026 -3 295 243 119 3 chr9 86784173 86784347 -55487097 - MIR SINE MIR -16 246 2 1847 145 0 17 chr9 86784851 86785141 -55486303 + AluJo SINE Alu 11 295 -17 335 218 50 30 chr9 86785876 86785977 -55485467 - MLT1I LTR MaLR -27 382 280 252 269 0 0 chr9 86786125 86786192 -55485252 - L1MC5 LINE L1 -70 7891 7825 230 225 88 0 chr9 86786193 86786273 -55485171 - L1MC5 LINE L1 -170 7791 7705 22 0 0 0 chr9 86788749 86788771 -55482673 + AT_rich Low_complexity Low_complexity 1 22 0 253 288 23 17 chr9 86788936 86789113 -55482331 + (TA)n Simple_repeat Simple_repeat 1 178 0 26 30 0 0 chr9 86789197 86789230 -55482214 + AT_rich Low_complexity Low_complexity 1 33 0 269 178 33 44 chr9 86789265 86789355 -55482089 + (TA)n Simple_repeat Simple_repeat 1 89 0 206 245 0 0 chr9 86789350 86789403 -55482041 + (TTATA)n Simple_repeat Simple_repeat 2 54 0 * 206 180 16 0 chr9 86789403 86789464 -55481980 + (TA)n Simple_repeat Simple_repeat 1 62 0 27 0 0 0 chr9 86789497 86789524 -55481920 + AT_rich Low_complexity Low_complexity 1 27 0 463 171 211 0 chr9 86790936 86791059 -55480385 - MER97c DNA MER1_type? -912 178 30 23 0 0 0 chr9 86791529 86791552 -55479892 + AT_rich Low_complexity Low_complexity 1 23 0 1904 131 14 0 chr9 86791743 86792018 -55479426 + AluSg SINE Alu 1 279 -31 800 162 0 22 chr9 86792176 86792312 -55479132 + FLAM_C SINE Alu 1 133 0 2258 107 0 0 chr9 86792400 86792698 -55478746 - AluSc SINE Alu -11 298 1 225 364 76 27 chr9 86793118 86793302 -55478142 - L2 LINE L2 -190 3082 2890 1644 189 7 13 chr9 86793459 86793766 -55477678 - AluJb SINE Alu -7 305 1 626 225 8 8 chr9 86793981 86794101 -55477343 - FLAM_A SINE Alu -9 124 5 1769 151 35 3 chr9 86794933 86795217 -55476227 + AluJb SINE Alu 1 293 -19 408 155 0 0 chr9 86795219 86795290 -55476154 + (TG)n Simple_repeat Simple_repeat 2 72 0 217 255 13 40 chr9 86795925 86796074 -55475370 + A-rich Low_complexity Low_complexity 1 145 0 2196 116 0 19 chr9 86796176 86796494 -55474950 + AluSx SINE Alu 1 312 0 682 182 58 0 chr9 86796628 86796749 -55474695 + FLAM_A SINE Alu 6 133 -9 1599 121 0 13 chr9 86797373 86797604 -55473840 - AluSq SINE Alu -8 305 78 3524 162 34 18 chr9 86797608 86798127 -55473317 - L1PA16 LINE L1 -341 5825 5316 2422 96 0 0 chr9 86798127 86798430 -55473014 - AluSx SINE Alu -9 303 1 3524 162 34 18 chr9 86798430 86799199 -55472245 - L1PA16 LINE L1 -850 5316 4501 21 43 0 22 chr9 86799787 86799814 -55471630 + AT_rich Low_complexity Low_complexity 1 28 -17 852 209 0 13 chr9 86799814 86799967 -55471477 - FRAM SINE Alu -15 151 1 21 43 0 22 chr9 86799967 86799985 -55471459 + AT_rich Low_complexity Low_complexity 28 45 0 2419 95 49 23 chr9 86799996 86800385 -55471059 + MLT2A1 LTR ERVL 1 399 -45 308 256 47 0 chr9 86800400 86800486 -55470958 - L1MC4 LINE L1 -1339 6703 6614 314 70 0 35 chr9 86800493 86800550 -55470894 + MLT2A2 LTR ERVL 399 453 0 2666 56 20 0 chr9 86800550 86800907 -55470537 + HERVL-A2 LTR ERVL 1 364 -5290 * 21820 55 8 3 chr9 86800897 86803695 -55467749 + HERVL-A1 LTR ERVL 2845 5654 0 2726 83 28 8 chr9 86803695 86804091 -55467353 + MLT2A1 LTR ERVL 1 404 -40 236 81 35 46 chr9 86804091 86804178 -55467266 + (TA)n Simple_repeat Simple_repeat 2 87 0 494 192 135 0 chr9 86804210 86804314 -55467130 - FLAM_C SINE Alu -25 118 1 1987 148 3 7 chr9 86804359 86804662 -55466782 - AluJb SINE Alu -10 302 1 2138 123 0 16 chr9 86806045 86806362 -55465082 + AluSx SINE Alu 1 312 0 338 116 0 43 chr9 86806396 86806465 -55464979 - Alu SINE Alu 0 300 235 21 36 0 0 chr9 86806713 86806741 -55464703 + AT_rich Low_complexity Low_complexity 1 28 0 1850 59 0 0 chr9 86806853 86807072 -55464372 - AluY SINE Alu -10 301 83 2377 153 26 5 chr9 86807073 86807661 -55463783 - L1M3 LINE L1 -728 5452 4851 414 145 0 13 chr9 86807685 86807761 -55463683 + L1MA9 LINE L1 5992 6066 -246 288 0 0 0 chr9 86807796 86807828 -55463616 + (TG)n Simple_repeat Simple_repeat 1 32 0 2035 129 4 0 chr9 86807828 86808107 -55463337 - AluSq SINE Alu -33 280 1 232 180 148 0 chr9 86808155 86808216 -55463228 + L1ME4a LINE L1 5589 5658 -463 3625 158 13 18 chr9 86808227 86808708 -55462736 + L1P5 LINE L1 4714 5196 -955 2397 77 0 7 chr9 86808708 86809008 -55462436 + AluY SINE Alu 1 298 -13 3625 158 13 18 chr9 86809008 86809649 -55461795 + L1P5 LINE L1 5196 5823 -328 1043 41 0 0 chr9 86809751 86809872 -55461572 - AluY SINE Alu -190 121 1 654 190 11 69 chr9 86810143 86810317 -55461127 + MER5B DNA MER1_type 15 178 0 180 0 0 0 chr9 86810696 86810716 -55460728 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 2278 112 0 10 chr9 86810907 86811221 -55460223 + AluJb SINE Alu 1 311 -1 591 261 85 33 chr9 86811227 86811463 -55459981 + L1ME4a LINE L1 5699 5967 -154 2275 78 0 0 chr9 86811463 86811777 -55459667 + AluY SINE Alu 1 314 0 591 261 85 33 chr9 86811777 86811937 -55459507 + L1ME4a LINE L1 5967 6117 -4 2301 107 0 0 chr9 86812408 86812698 -55458746 + AluSg SINE Alu 1 290 -20 1024 138 6 30 chr9 86813297 86813464 -55457980 - AluJo SINE Alu -149 163 1 234 264 71 57 chr9 86813524 86813664 -55457780 - L1ME3A LINE L1 -64 6106 5965 1342 276 77 38 chr9 86813859 86815030 -55456414 - L1ME3A LINE L1 -326 5844 4720 1602 182 9 6 chr9 86815030 86815354 -55456090 - L1MB7 LINE L1 0 6184 5860 420 186 29 0 chr9 86815359 86815461 -55455983 - L1MA7 LINE L1 -1 6290 6186 1342 276 77 38 chr9 86815461 86815793 -55455651 - L1ME3A LINE L1 -1453 4717 4275 1065 142 6 6 chr9 86815883 86816052 -55455392 - AluSg/x SINE Alu -9 303 135 1898 137 32 14 chr9 86816060 86816370 -55455074 - AluSx SINE Alu 0 312 1 1771 255 110 50 chr9 86816370 86816518 -55454926 - L1ME3A LINE L1 -1858 4288 4150 321 152 0 0 chr9 86816518 86816584 -55454860 + L1MB8 LINE L1 6113 6178 0 1771 255 110 50 chr9 86816584 86816866 -55454578 - L1ME3A LINE L1 -1996 4150 3887 2411 72 0 34 chr9 86816866 86817187 -55454257 - AluY SINE Alu -1 310 1 1771 255 110 50 chr9 86817187 86817261 -55454183 - L1ME3A LINE L1 -2259 3887 3819 2517 175 67 19 chr9 86817261 86817797 -55453647 - MER68 LTR ERV1 0 562 1 1771 255 110 50 chr9 86817797 86818888 -55452556 - L1ME3A LINE L1 -2327 3819 2538 1697 154 0 15 chr9 86818888 86819172 -55452272 - AluJb SINE Alu -42 270 1 1771 255 110 50 chr9 86819172 86819204 -55452240 - L1ME3A LINE L1 -3608 2538 2509 205 229 62 0 chr9 86819557 86819605 -55451839 + L2 LINE L2 3262 3312 -1 203 216 0 78 chr9 86819984 86820035 -55451409 - MIR3 SINE MIR -5 203 157 23 0 0 0 chr9 86820283 86820306 -55451138 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr9 86820824 86820856 -55450588 + AT_rich Low_complexity Low_complexity 1 32 0 2221 108 10 0 chr9 86821039 86821336 -55450108 + AluSx SINE Alu 1 300 -12 228 293 17 17 chr9 86821459 86821517 -55449927 - L2 LINE L2 -9 3263 3206 22 56 0 0 chr9 86821530 86821566 -55449878 + AT_rich Low_complexity Low_complexity 1 36 0 1790 177 0 22 chr9 86821589 86821905 -55449539 - AluJb SINE Alu -3 309 1 918 194 81 54 chr9 86822697 86822955 -55448489 - L1MB4 LINE L1 -1 6179 5915 1841 125 54 7 chr9 86822955 86823235 -55448209 + AluSx SINE Alu 1 293 -19 1353 203 14 21 chr9 86823257 86823543 -55447901 + AluSc SINE Alu 1 284 -25 2476 155 13 32 chr9 86823689 86824104 -55447340 + L1MB4 LINE L1 5724 6131 -49 2564 66 3 0 chr9 86824104 86824409 -55447035 + AluSp SINE Alu 1 306 -7 2476 155 13 32 chr9 86824409 86824458 -55446986 + L1MB4 LINE L1 6131 6179 -1 208 262 16 0 chr9 86824470 86824531 -55446913 + MIR3 SINE MIR 140 201 -7 754 174 0 8 chr9 86824583 86824704 -55446740 + L1MC1 LINE L1 6205 6324 -9 216 159 91 0 chr9 86824773 86824817 -55446627 + MIR SINE MIR 214 261 -1 237 248 59 148 chr9 86824825 86825027 -55446417 - MIR SINE MIR -71 191 8 21 36 0 0 chr9 86825969 86825997 -55445447 + AT_rich Low_complexity Low_complexity 1 28 0 333 203 34 0 chr9 86826670 86826729 -55444715 + MER5C DNA MER1_type 1 61 -263 1300 62 6 23 chr9 86827405 86827582 -55443862 + L1PA3 LINE L1 5979 6152 -3 271 191 0 34 chr9 86827585 86827674 -55443770 + (TA)n Simple_repeat Simple_repeat 1 86 0 1156 228 168 40 chr9 86827678 86828662 -55442782 + HAL1 LINE L1 1337 2473 -34 2063 118 3 3 chr9 86829047 86829335 -55442109 + AluSq SINE Alu 1 288 -25 533 254 132 74 chr9 86829456 86829767 -55441677 - MLT1J2 LTR MaLR -119 331 3 400 282 39 0 chr9 86829769 86829872 -55441572 + L2 LINE L2 1381 1487 -1827 397 215 43 11 chr9 86830241 86830334 -55441110 - MER5A DNA MER1_type -85 104 9 262 380 77 30 chr9 86830372 86830838 -55440606 + L2 LINE L2 2178 2665 -649 308 150 88 38 chr9 86831367 86831447 -55439997 + MIR SINE MIR 33 116 -146 21 71 0 0 chr9 86831976 86832018 -55439426 + GC_rich Low_complexity Low_complexity 1 42 0 617 100 0 11 chr9 86832216 86832306 -55439138 + AluY SINE Alu 211 299 -12 1472 166 100 8 chr9 86832483 86832742 -55438702 - AluJo SINE Alu -29 283 1 309 51 0 0 chr9 86833859 86833898 -55437546 + (CA)n Simple_repeat Simple_repeat 2 40 0 2081 106 3 23 chr9 86834697 86834861 -55436583 - AluSq SINE Alu -16 297 140 2525 54 0 16 chr9 86834861 86835176 -55436268 - AluY SINE Alu -1 310 1 2081 106 3 23 chr9 86835176 86835314 -55436130 - AluSq SINE Alu -173 140 1 529 163 33 0 chr9 86835390 86835482 -55435962 + MER5A DNA MER1_type 18 112 -77 469 162 0 0 chr9 86835874 86835948 -55435496 + MER6B DNA MER2_type 5 78 -198 205 340 76 21 chr9 86836301 86836445 -55434999 - L2 LINE L2 -4 3268 3117 349 337 163 6 chr9 86836451 86836629 -55434815 - L2 LINE L2 -1 3271 3066 827 100 8 23 chr9 86836642 86836772 -55434672 - L1PA16 LINE L1 -243 5923 5796 210 150 0 0 chr9 86836791 86836831 -55434613 + (T)n Simple_repeat Simple_repeat 1 40 0 661 246 23 137 chr9 86836842 86837108 -55434336 - L2 LINE L2 -2365 949 739 204 40 0 0 chr9 86837108 86837133 -55434311 + (CATA)n Simple_repeat Simple_repeat 2 26 0 661 246 23 137 chr9 86837133 86837252 -55434192 - L2 LINE L2 -2575 739 608 792 147 0 0 chr9 86837623 86837739 -55433705 + L1MA2 LINE L1 6187 6302 -2 2180 78 14 0 chr9 86837750 86838032 -55433412 - AluY SINE Alu -25 286 1 1103 192 60 32 chr9 86838352 86838602 -55432842 - AluJo SINE Alu -13 299 43 1350 124 69 18 chr9 86838784 86839002 -55432442 - MER30 DNA MER1_type -1 229 1 191 93 0 130 chr9 86839192 86839246 -55432198 + L2 LINE L2 3267 3313 0 934 173 56 30 chr9 86839774 86839971 -55431473 + MER20 DNA MER1_type 2 203 -16 628 224 0 39 chr9 86840754 86840933 -55430511 + AluY SINE Alu 137 308 -3 1687 184 78 17 chr9 86840935 86841282 -55430162 - MSTB LTR MaLR -58 368 1 2382 87 7 0 chr9 86841327 86841636 -55429808 - AluSp SINE Alu -2 311 1 30 48 0 16 chr9 86841732 86841764 -55429680 + AT_rich Low_complexity Low_complexity 1 33 -28 2221 95 10 7 chr9 86841764 86842058 -55429386 - AluSq SINE Alu -18 295 1 30 48 0 16 chr9 86842058 86842087 -55429357 + AT_rich Low_complexity Low_complexity 33 61 0 2421 68 3 3 chr9 86842286 86842579 -55428865 - AluSp SINE Alu -18 295 3 2152 71 41 24 chr9 86842974 86843268 -55428176 - AluY SINE Alu -12 299 1 322 188 0 0 chr9 86844213 86844261 -55427183 + MER58B DNA MER1_type 2 49 -292 1855 132 31 7 chr9 86844371 86844533 -55426911 - AluSx SINE Alu -17 295 121 2191 118 0 19 chr9 86844533 86844846 -55426598 - AluSx SINE Alu -3 309 3 1855 132 31 7 chr9 86844846 86844971 -55426473 - AluSx SINE Alu -191 121 1 1400 171 34 19 chr9 86845042 86845311 -55426133 + MER58B DNA MER1_type 69 341 0 202 214 0 24 chr9 86845325 86845367 -55426077 - L2 LINE L2 -75 3238 3198 2207 93 6 35 chr9 86845389 86845702 -55425742 + AluSq SINE Alu 1 304 -9 312 228 67 144 chr9 86845703 86845916 -55425528 - MIR SINE MIR -65 197 12 551 230 24 0 chr9 86846010 86846136 -55425308 - L1MC2 LINE L1 -23 6321 6193 2114 89 39 6 chr9 86846136 86846523 -55424921 - LTR7 LTR ERV1 0 450 1 3026 86 9 12 chr9 86846523 86846955 -55424489 - HERVH LTR ERV1 0 7713 7283 6407 93 9 3 chr9 86846959 86847840 -55423604 - HERVH LTR ERV1 -2693 5020 4135 2515 125 65 25 chr9 86847840 86848273 -55423171 + LTR7 LTR ERV1 1 450 0 2117 176 44 24 chr9 86848273 86848723 -55422721 + HERVH LTR ERV1 1 459 -7254 2006 199 51 9 chr9 86848782 86849215 -55422229 + HERVH LTR ERV1 800 1250 -6463 201 127 48 32 chr9 86849441 86849504 -55421940 + (TTATA)n Simple_repeat Simple_repeat 4 67 0 2499 46 10 10 chr9 86850199 86850501 -55420943 - AluY SINE Alu -9 302 1 2456 239 70 109 chr9 86850594 86851956 -55419488 - HAL1 LINE L1 -1093 1414 107 28 48 0 0 chr9 86852261 86852303 -55419141 + AT_rich Low_complexity Low_complexity 1 42 0 968 188 6 34 chr9 86852303 86852479 -55418965 - FAM SINE Alu 0 175 5 2324 103 3 0 chr9 86852499 86852800 -55418644 - AluSp SINE Alu -11 302 1 583 176 0 0 chr9 86852864 86852949 -55418495 + FRAM SINE Alu 55 139 -37 368 205 25 16 chr9 86852951 86853073 -55418371 + GA-rich Low_complexity Low_complexity 2 124 0 351 296 9 19 chr9 86854372 86854480 -55416964 - L2 LINE L2 -8 3305 3199 2174 102 3 0 chr9 86854915 86855221 -55416223 + AluSp SINE Alu 1 307 0 1892 187 76 19 chr9 86855961 86856346 -55415098 + L1MB8 LINE L1 5188 5608 -570 1749 190 6 10 chr9 86856346 86856657 -55414787 + AluJo SINE Alu 1 310 -2 1892 187 76 19 chr9 86856657 86856756 -55414688 + L1MB8 LINE L1 5608 5700 -478 1254 153 149 24 chr9 86856756 86857005 -55414439 - MER57A LTR ERV1 0 403 124 2595 156 24 32 chr9 86857013 86857513 -55413931 + L1MB8 LINE L1 5683 6178 0 894 202 0 0 chr9 86857521 86857689 -55413755 + FRAM SINE Alu 2 169 -7 345 200 0 15 chr9 86858138 86858203 -55413241 - MER5B DNA MER1_type -113 65 2 1051 125 7 15 chr9 86858221 86858391 -55413053 + MSTB LTR MaLR 1 167 -261 277 115 16 33 chr9 86858391 86858452 -55412992 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 604 247 93 0 chr9 86858826 86858988 -55412456 - MER5A DNA MER1_type 0 189 13 272 134 412 10 chr9 86859140 86859237 -55412207 + MER69 DNA AcHobo 1549 1684 -842 262 299 0 13 chr9 86859251 86859328 -55412116 + LTR67 LTR ERVL 470 545 -12 236 248 0 155 chr9 86859404 86859533 -55411911 + MIR SINE MIR 136 244 -18 976 144 0 39 chr9 86859585 86859738 -55411706 - AluSg/x SINE Alu -21 291 145 676 260 21 98 chr9 86859821 86860156 -55411288 - L2 LINE L2 0 3313 3005 2018 131 10 13 chr9 86860156 86860462 -55410982 + AluSx SINE Alu 1 305 -7 1394 179 46 4 chr9 86860621 86860884 -55410560 + AluJo SINE Alu 9 282 -30 243 0 0 0 chr9 86860887 86860914 -55410530 + (CATA)n Simple_repeat Simple_repeat 2 28 0 946 179 131 9 chr9 86861640 86861869 -55409575 + L1MB3 LINE L1 5664 5920 -263 2340 98 0 7 chr9 86861869 86862175 -55409269 - AluSx SINE Alu -8 304 1 578 225 135 14 chr9 86862175 86862199 -55409245 + L1ME3 LINE L1 5924 5944 -218 790 303 48 32 chr9 86862239 86862549 -55408895 + L3 LINE CR1 473 787 -790 194 323 32 11 chr9 86862636 86862729 -55408715 + L3 LINE CR1 1232 1326 -251 186 43 0 0 chr9 86862799 86862822 -55408622 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 748 175 33 0 chr9 86862831 86862951 -55408493 + FLAM_A SINE Alu 1 124 -9 337 266 23 45 chr9 86863079 86863256 -55408188 - L1MEc LINE L1 -4070 2326 2154 265 210 32 0 chr9 86863282 86863344 -55408100 - AluSq SINE Alu -3 299 236 1505 119 10 0 chr9 86863344 86863545 -55407899 - AluSq SINE Alu -110 203 1 660 269 0 29 chr9 86864116 86864287 -55407157 - AluSg/x SINE Alu -21 291 126 299 248 148 10 chr9 86864293 86864394 -55407050 - L1MEc LINE L1 -4398 1998 1884 730 105 0 0 chr9 86864510 86864605 -55406839 + AluSp/q SINE Alu 205 299 -14 900 266 143 55 chr9 86864608 86865479 -55405965 - L1MEc LINE L1 -4493 1800 846 187 167 24 0 chr9 86865589 86865631 -55405813 + L2 LINE L2 3265 3307 -6 430 300 129 50 chr9 86865895 86866007 -55405437 + MIR SINE MIR 1 103 -159 1551 183 35 11 chr9 86866007 86866291 -55405153 - AluJb SINE Alu -19 293 3 430 300 129 50 chr9 86866291 86866418 -55405026 + MIR SINE MIR 103 259 -3 739 144 121 0 chr9 86866598 86866730 -55404714 + MER5A DNA MER1_type 2 149 -40 267 327 45 0 chr9 86866895 86867005 -55404439 - L2 LINE L2 -1483 1831 1717 1911 136 3 23 chr9 86867095 86867403 -55404041 - AluSx SINE Alu -10 302 1 2337 101 0 7 chr9 86868327 86868624 -55402820 - AluSx SINE Alu -17 295 1 289 233 10 97 chr9 86869295 86869398 -55402046 - MER34 LTR ERV1 -411 131 22 217 255 13 40 chr9 86869522 86869671 -55401773 + A-rich Low_complexity Low_complexity 1 145 0 2186 116 0 19 chr9 86869773 86870091 -55401353 + AluSx SINE Alu 1 312 0 731 182 58 0 chr9 86870225 86870346 -55401098 + FLAM_A SINE Alu 6 133 -9 2087 83 0 32 chr9 86870970 86871284 -55400160 - AluSq SINE Alu -8 305 2 665 278 137 33 chr9 86871933 86872232 -55399212 + L2 LINE L2 2984 3313 0 2273 99 0 7 chr9 86872846 86873149 -55398295 + AluSx SINE Alu 1 301 -11 531 286 22 22 chr9 86873835 86874020 -55397424 + MLT1L LTR MaLR 431 615 0 2334 95 0 3 chr9 86874311 86874606 -55396838 + AluSg SINE Alu 1 294 -16 1363 204 78 28 chr9 86874723 86874898 -55396546 + L1ME2 LINE L1 5514 5679 -487 1780 167 3 3 chr9 86874898 86875210 -55396234 - AluSq SINE Alu -1 312 1 1363 204 78 28 chr9 86875210 86875391 -55396053 + L1ME2 LINE L1 5679 5888 -278 1422 165 35 8 chr9 86875405 86875659 -55395785 + AluSg SINE Alu 11 271 -39 523 268 58 56 chr9 86875673 86875928 -55395516 + L1ME2 LINE L1 5906 6164 0 2233 94 7 0 chr9 86875937 86876223 -55395221 + AluSx SINE Alu 1 288 -24 399 297 34 17 chr9 86876243 86876361 -55395083 + L2 LINE L2 3180 3299 -14 302 221 10 29 chr9 86876569 86876673 -55394771 + (TA)n Simple_repeat Simple_repeat 1 102 0 1495 153 8 4 chr9 86877335 86877576 -55393868 - AluJb SINE Alu -25 287 46 670 116 0 11 chr9 86877576 86877694 -55393750 + AluY SINE Alu 188 304 0 226 216 0 39 chr9 86877741 86877792 -55393652 - MER61E LTR ERV1 -404 165 117 * 236 267 0 103 chr9 86877769 86877885 -55393559 - MER61E LTR ERV1 -380 189 86 * 428 228 16 55 chr9 86877866 86877993 -55393451 - LTR25 LTR ERV1 -441 353 232 2413 56 0 7 chr9 86878252 86878557 -55392887 - AluY SINE Alu -8 303 1 186 228 25 66 chr9 86878558 86878637 -55392807 - MER5B DNA MER1_type -113 68 1 2073 82 4 0 chr9 86878958 86879227 -55392217 - AluSp SINE Alu 0 313 44 1930 97 0 8 chr9 86879861 86880118 -55391326 - AluSc SINE Alu -11 298 44 712 258 43 21 chr9 86880675 86880908 -55390536 - L1MC/D LINE L1 -2258 5550 5313 378 0 0 0 chr9 86880918 86880960 -55390484 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1234 81 0 0 chr9 86880963 86881112 -55390332 - AluSq SINE Alu -30 283 135 2493 60 0 16 chr9 86881113 86881428 -55390016 - AluY SINE Alu -1 310 1 332 286 113 15 chr9 86881624 86881757 -55389687 - L2 LINE L2 -1149 2165 2020 1744 124 6 81 chr9 86882072 86882395 -55389049 + AluJb SINE Alu 1 299 -13 956 209 76 53 chr9 86882451 86882547 -55388897 + L1MC5 LINE L1 7555 7647 -314 2310 98 3 3 chr9 86882547 86882853 -55388591 + AluSg SINE Alu 1 306 -4 956 209 76 53 chr9 86882853 86883111 -55388333 + L1MC5 LINE L1 7647 7917 -44 1774 149 43 0 chr9 86883125 86883407 -55388037 + AluJo SINE Alu 3 296 -16 1320 160 124 28 chr9 86883672 86883954 -55387490 - AluSg1 SINE Alu 0 309 1 246 277 87 77 chr9 86883956 86884256 -55387188 - L1MEc LINE L1 -4248 2148 1846 865 175 144 12 chr9 86884264 86884560 -55386884 + MSTD LTR MaLR 1 395 -1 543 282 27 56 chr9 86884577 86884912 -55386532 - L1MEc LINE L1 -4526 1762 1460 2452 77 0 7 chr9 86885047 86885357 -55386087 + AluSg1 SINE Alu 1 308 -1 389 313 83 60 chr9 86887080 86887645 -55383799 - L1MEc LINE L1 -4972 1233 656 1425 160 0 4 chr9 86888466 86888704 -55382740 + AluSq SINE Alu 76 312 -1 987 214 71 22 chr9 86888704 86888957 -55382487 - L1ME LINE L1 -461 5705 5443 24 0 0 0 chr9 86889014 86889038 -55382406 + AT_rich Low_complexity Low_complexity 1 24 0 683 311 138 24 chr9 86890989 86891523 -55379921 + L2 LINE L2 2712 3311 -2 242 300 118 22 chr9 86891516 86891786 -55379658 - L2 LINE L2 -1616 1698 1403 * 391 302 138 0 chr9 86892514 86892673 -55378771 + MIR SINE MIR 31 211 -51 2261 67 32 3 chr9 86893912 86894197 -55377247 - AluY SINE Alu -18 293 1 1103 192 60 32 chr9 86894517 86894767 -55376677 - AluJo SINE Alu -13 299 43 1473 105 64 18 chr9 86894949 86895168 -55376276 - MER30 DNA MER1_type -1 229 1 191 93 0 130 chr9 86895358 86895412 -55376032 + L2 LINE L2 3267 3313 0 934 173 56 30 chr9 86895940 86896137 -55375307 + MER20 DNA MER1_type 2 203 -16 300 277 23 62 chr9 86896405 86896535 -55374909 - HAL1 LINE L1 -110 2397 2273 558 286 53 30 chr9 86896569 86897036 -55374408 - HAL1 LINE L1 -375 2132 1593 2187 98 0 58 chr9 86897225 86897553 -55373891 - AluSc SINE Alu 0 309 1 23 68 0 0 chr9 86897614 86897658 -55373786 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr9 86897669 86897699 -55373745 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr9 86897801 86897840 -55373604 + AT_rich Low_complexity Low_complexity 1 39 0 2085 132 7 0 chr9 86898316 86898634 -55372810 + AluSx SINE Alu 1 320 0 188 108 0 27 chr9 86899167 86899204 -55372240 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 1969 160 9 26 chr9 86899883 86900019 -55371425 - MER7A DNA MER2_type -2694 344 207 2736 124 3 3 chr9 86900019 86900382 -55371062 - THE1B LTR MaLR 0 364 2 1969 160 9 26 chr9 86900382 86900588 -55370856 - MER7A DNA MER2_type -2831 207 10 2075 82 0 0 chr9 86900588 86900843 -55370601 - AluY SINE Alu -13 298 44 4437 133 11 37 chr9 86901047 86901522 -55369922 - L1MA8 LINE L1 -5 6286 5837 2323 96 7 0 chr9 86901522 86901814 -55369630 - AluSx SINE Alu -18 294 1 4437 133 11 37 chr9 86901814 86902093 -55369351 - L1MA8 LINE L1 -454 5837 5552 1724 172 32 0 chr9 86902098 86902383 -55369061 - AluJb SINE Alu -18 294 1 2428 84 3 0 chr9 86902389 86902687 -55368757 - AluSx SINE Alu -13 299 1 2249 97 3 23 chr9 86903299 86903608 -55367836 + AluSp SINE Alu 1 303 -10 315 256 34 60 chr9 86904155 86904272 -55367172 - MER94 DNA DNA -20 114 1 2313 101 7 0 chr9 86905217 86905515 -55365929 - AluSp SINE Alu -12 301 2 21 0 0 0 chr9 86906079 86906100 -55365344 + AT_rich Low_complexity Low_complexity 1 21 0 413 89 0 0 chr9 86906241 86906297 -55365147 + Alu SINE Alu 245 300 -11 265 222 56 0 chr9 86906298 86906370 -55365074 + L1MEc LINE L1 2176 2251 -4312 1016 150 7 0 chr9 86906382 86906535 -55364909 - Tigger2 DNA MER2_type -1 2717 2564 1059 169 28 0 chr9 86906541 86906719 -55364725 - Tigger2 DNA MER2_type -2534 184 2 674 202 28 42 chr9 86906723 86906948 -55364496 + L1MEc LINE L1 2213 2477 -3941 694 192 0 0 chr9 86906964 86907068 -55364376 + AluJb SINE Alu 5 108 -204 1859 186 26 42 chr9 86907115 86907571 -55363873 + L1ME2 LINE L1 5621 6069 -95 957 189 21 16 chr9 86908219 86908410 -55363034 + MLT1D LTR MaLR 314 505 0 2209 139 33 38 chr9 86908566 86908932 -55362512 + THE1B LTR MaLR 1 364 0 2171 141 96 20 chr9 86908969 86909374 -55362070 + L1MB5 LINE L1 5731 6166 -8 2388 94 0 0 chr9 86909562 86909860 -55361584 + AluSx SINE Alu 1 298 -14 2152 113 7 0 chr9 86909950 86910252 -55361192 + AluSq SINE Alu 1 304 -9 488 302 54 23 chr9 86910603 86910861 -55360583 - L1ME LINE L1 -448 5714 5449 622 154 15 8 chr9 86910948 86911078 -55360366 + CT-rich Low_complexity Low_complexity 3 133 0 617 184 269 7 chr9 86912622 86912763 -55358681 + MER5B DNA MER1_type 1 178 0 1725 90 5 5 chr9 86912828 86913050 -55358394 + AluSc SINE Alu 1 222 -87 22 0 0 0 chr9 86913198 86913220 -55358224 + AT_rich Low_complexity Low_complexity 1 22 0 393 142 73 0 chr9 86913340 86913419 -55358025 + MSTB2 LTR MaLR 290 457 0 24 32 0 0 chr9 86913636 86913667 -55357777 + AT_rich Low_complexity Low_complexity 1 31 0 689 244 92 6 chr9 86914312 86914476 -55356968 + MER5B DNA MER1_type 1 178 0 2467 66 0 3 chr9 86914510 86914811 -55356633 + AluY SINE Alu 1 300 -11 348 24 0 0 chr9 86914811 86914852 -55356592 + (TA)n Simple_repeat Simple_repeat 1 41 0 1737 122 4 0 chr9 86914999 86915280 -55356164 + AluSx SINE Alu 44 325 0 903 214 97 104 chr9 86915293 86915582 -55355862 + Charlie1a DNA MER1_type 1 287 -1168 3667 164 29 41 chr9 86915582 86915790 -55355654 + L1MB3 LINE L1 5401 5610 -573 1625 197 0 7 chr9 86915790 86916090 -55355354 + AluJo SINE Alu 1 298 -14 3667 164 29 41 chr9 86916090 86916444 -55355000 + L1MB3 LINE L1 5610 5954 -229 2001 141 7 10 chr9 86916444 86916743 -55354701 + AluSq SINE Alu 1 298 -15 3667 164 29 41 chr9 86916743 86916935 -55354509 + L1MB3 LINE L1 5954 6147 -36 1660 168 7 11 chr9 86916957 86917242 -55354202 - AluJb SINE Alu -28 284 1 316 216 69 12 chr9 86917338 86917458 -55353986 - MER96 DNA MER1_type? -6 169 1 4045 161 83 52 chr9 86917458 86917586 -55353858 + Charlie1a DNA MER1_type 301 424 -2337 2325 96 3 0 chr9 86917586 86917889 -55353555 + AluSq SINE Alu 1 304 -9 4045 161 83 52 chr9 86917889 86918208 -55353236 + Charlie1a DNA MER1_type 424 732 -2029 2030 107 3 27 chr9 86918208 86918507 -55352937 + AluSx SINE Alu 1 292 -20 4045 161 83 52 chr9 86918507 86919014 -55352430 + Charlie1a DNA MER1_type 732 1285 -170 1998 120 4 7 chr9 86919018 86919293 -55352151 - AluSx SINE Alu -15 297 24 840 159 0 40 chr9 86919394 86919545 -55351899 - AluSq/x SINE Alu -166 146 2 479 229 157 24 chr9 86919619 86919771 -55351673 - HAL1 LINE L1 -1161 1346 1215 2459 87 6 0 chr9 86919771 86920082 -55351362 - AluSq SINE Alu 0 313 1 479 229 157 24 chr9 86920082 86920178 -55351266 - HAL1 LINE L1 -1292 1215 1065 746 271 17 0 chr9 86920346 86920527 -55350917 + Charlie1 DNA MER1_type 15 198 -2563 1996 135 7 0 chr9 86920761 86921050 -55350394 - AluSq SINE Alu -18 295 5 405 130 78 13 chr9 86921067 86921144 -55350300 - MIR3 SINE MIR -31 177 96 337 186 207 0 chr9 86921224 86921364 -55350080 - Charlie1 DNA MER1_type 0 2761 2593 840 145 8 0 chr9 86921365 86921496 -55349948 + AluSq/x SINE Alu 1 132 -180 273 228 0 0 chr9 86921598 86921677 -55349767 + L1MEc LINE L1 2221 2299 -4097 702 175 33 0 chr9 86921833 86921953 -55349491 - FLAM_A SINE Alu -9 124 1 186 43 0 0 chr9 86921962 86921985 -55349459 + (TTTTC)n Simple_repeat Simple_repeat 1 23 0 207 333 32 11 chr9 86922055 86922148 -55349296 - L3 LINE CR1 -251 1326 1232 914 280 40 73 chr9 86922235 86922607 -55348837 - L3 LINE CR1 -790 787 428 2449 80 3 0 chr9 86922609 86922909 -55348535 + AluSx SINE Alu 1 301 -11 1742 172 32 0 chr9 86922915 86923200 -55348244 + AluJb SINE Alu 1 294 -18 4031 134 11 37 chr9 86923205 86923484 -55347960 + L1MA8 LINE L1 5552 5837 -454 2322 96 7 0 chr9 86923484 86923776 -55347668 + AluSx SINE Alu 1 294 -18 4031 134 11 37 chr9 86923776 86924251 -55347193 + L1MA8 LINE L1 5837 6286 -5 2073 82 0 0 chr9 86924455 86924710 -55346734 + AluY SINE Alu 44 298 -13 1810 160 9 26 chr9 86924710 86924916 -55346528 + MER7A DNA MER2_type 10 207 -2831 2554 124 3 3 chr9 86924916 86925279 -55346165 + THE1B LTR MaLR 2 364 0 1810 160 9 26 chr9 86925279 86925415 -55346029 + MER7A DNA MER2_type 207 344 -2 188 108 0 27 chr9 86926094 86926131 -55345313 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 2118 131 7 0 chr9 86926665 86926982 -55344462 - AluSx SINE Alu 0 319 1 25 51 0 0 chr9 86927458 86927497 -55343947 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr9 86927547 86927571 -55343873 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr9 86927601 86927631 -55343813 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr9 86927642 86927687 -55343757 + AT_rich Low_complexity Low_complexity 1 45 0 330 133 0 0 chr9 86927735 86927799 -55343645 + Alu SINE Alu 2 50 -251 280 314 108 0 chr9 86927889 86927991 -55343453 + L2 LINE L2 2020 2132 -1182 1997 112 7 3 chr9 86928320 86928605 -55342839 - AluSg SINE Alu -24 286 1 204 267 209 0 chr9 86928945 86929031 -55342413 - L2 LINE L2 -5 3267 3164 210 278 14 42 chr9 86929103 86929175 -55342269 - L2 LINE L2 -202 3070 3001 708 245 0 57 chr9 86929387 86929579 -55341865 + MER5A DNA MER1_type 9 189 0 315 226 28 19 chr9 86930129 86930235 -55341209 - MLT1D LTR MaLR -398 107 1 1125 152 61 26 chr9 86930236 86930466 -55340978 + L1MC3 LINE L1 6623 6860 -925 1429 105 5 5 chr9 86930474 86930664 -55340780 + AluSg/x SINE Alu 103 292 -20 3742 161 37 20 chr9 86930664 86931337 -55340107 + L1MC3 LINE L1 6877 7566 -219 2031 116 3 27 chr9 86931337 86931638 -55339806 + AluSx SINE Alu 1 294 -18 3742 161 37 20 chr9 86931638 86931728 -55339716 + L1MC3 LINE L1 7566 7653 -132 979 107 40 7 chr9 86931730 86932031 -55339413 + LTR7 LTR ERV1 1 450 0 481 211 39 8 chr9 86932031 86932159 -55339285 + HERVH LTR ERV1 1 132 -7581 2573 122 10 0 chr9 86932163 86932581 -55338863 - HERVH LTR ERV1 -4153 3560 3139 * 7199 136 2 19 chr9 86932574 86933843 -55337601 - HERVH LTR ERV1 -4726 2987 1740 2439 67 0 3 chr9 86934123 86934422 -55337022 + AluY SINE Alu 9 306 -5 22 80 0 0 chr9 86934575 86934625 -55336819 + AT_rich Low_complexity Low_complexity 1 50 0 295 315 97 12 chr9 86936310 86936475 -55334969 + MIR SINE MIR 84 262 0 188 302 198 8 chr9 86936547 86936673 -55334771 - L2 LINE L2 -603 2711 2562 2420 106 0 0 chr9 86937229 86937541 -55333903 + AluSx SINE Alu 1 312 0 1992 141 10 0 chr9 86938285 86938589 -55332855 - AluSq SINE Alu -6 307 1 327 217 199 12 chr9 86938936 86939097 -55332347 + L1MC/D LINE L1 5340 5530 -2278 1371 248 87 73 chr9 86939172 86940095 -55331349 - L1MC4 LINE L1 0 8042 7107 766 281 63 4 chr9 86940095 86940365 -55331079 + L1MC/D LINE L1 5524 5809 -1999 1795 166 3 7 chr9 86940365 86940655 -55330789 + AluJo SINE Alu 1 289 -23 1450 201 4 14 chr9 86940984 86941263 -55330181 - AluJo SINE Alu -36 276 1 317 324 49 22 chr9 86941662 86941847 -55329597 + L1ME LINE L1 5476 5665 -456 1717 96 0 0 chr9 86941847 86942067 -55329377 + AluSx SINE Alu 1 220 -92 709 153 0 0 chr9 86942068 86942179 -55329265 + AluSg/x SINE Alu 190 300 -12 2303 59 28 3 chr9 86942548 86942834 -55328610 + AluY SINE Alu 1 293 -18 2193 68 0 4 chr9 86943267 86943533 -55327911 - AluY SINE Alu -46 265 1 310 237 140 32 chr9 86943577 86943670 -55327774 - HAL1 LINE L1 -4 2503 2401 844 271 124 36 chr9 86943819 86944343 -55327101 - HAL1 LINE L1 -338 2169 1600 690 264 65 14 chr9 86944372 86944588 -55326856 + L2 LINE L2 1463 1689 -1625 1087 169 42 33 chr9 86944684 86944897 -55326547 + AluJo SINE Alu 86 300 -12 661 282 133 0 chr9 86944901 86945149 -55326295 + L2 LINE L2 1790 2070 -1244 399 187 179 24 chr9 86945172 86945295 -55326149 - Charlie5 DNA MER1_type 0 2624 2483 1361 222 208 27 chr9 86945337 86945932 -55325512 + L1MC4 LINE L1 7190 7892 -150 444 300 147 9 chr9 86946030 86946363 -55325081 + L2 LINE L2 1608 1986 -1328 1358 307 114 12 chr9 86946619 86947529 -55323915 - L2 LINE L2 -5 3308 2305 2163 116 0 7 chr9 86947793 86948087 -55323357 - AluSx SINE Alu -20 292 1 296 28 0 0 chr9 86949156 86949192 -55322252 - U6 snRNA snRNA -71 36 1 1220 161 158 0 chr9 86949214 86949506 -55321938 + MER2 DNA MER2_type 1 338 -7 404 244 78 43 chr9 86949589 86949704 -55321740 + L2 LINE L2 3136 3254 -18 227 345 9 55 chr9 86949895 86950005 -55321439 - MIR SINE MIR -62 146 42 452 225 77 44 chr9 86952461 86952643 -55318801 - LTR8A LTR ERV1 0 727 540 * 758 176 115 22 chr9 86952642 86952824 -55318620 - LTR8 LTR ERV1 -492 199 1 4772 46 10 2 chr9 86952894 86953480 -55317964 - LTR10C LTR ERV1 0 591 1 2802 203 98 60 chr9 86953546 86954360 -55317084 - MER21B LTR ERV1 -18 845 1 21 0 0 0 chr9 86956420 86956441 -55315003 + AT_rich Low_complexity Low_complexity 1 21 0 1294 256 160 86 chr9 86956546 86957492 -55313952 + HAL1 LINE L1 11 886 -1621 1096 82 7 0 chr9 86957492 86957639 -55313805 + L1PA7 LINE L1 5990 6137 -17 1294 256 160 86 chr9 86957639 86957874 -55313570 + HAL1 LINE L1 886 1102 -1405 1828 167 0 11 chr9 86957874 86958156 -55313288 + AluJo SINE Alu 3 281 -31 225 0 0 0 chr9 86958161 86958186 -55313258 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1294 256 160 86 chr9 86958186 86958424 -55313020 + HAL1 LINE L1 1105 1542 -965 1062 194 63 44 chr9 86958451 86958766 -55312678 + L1MB8 LINE L1 4734 5054 -1092 3461 168 97 11 chr9 86958788 86959586 -55311858 + L1MB8 LINE L1 5296 6161 -17 1157 237 152 39 chr9 86959603 86960223 -55311221 + HAL1 LINE L1 1529 2218 -289 2261 94 0 20 chr9 86960420 86960719 -55310725 - AluSq SINE Alu -20 293 1 968 146 57 16 chr9 86960719 86960911 -55310533 + MER30 DNA MER1_type 3 202 -28 315 283 63 57 chr9 86960942 86961101 -55310343 + HAL1 LINE L1 2348 2507 0 354 321 46 65 chr9 86962298 86962346 -55309098 + HAL1b LINE L1 12 59 -1289 2337 72 17 3 chr9 86962346 86962638 -55308806 + AluSp SINE Alu 1 296 -17 354 321 46 65 chr9 86962638 86962913 -55308531 + HAL1b LINE L1 59 329 -1019 588 251 137 78 chr9 86962935 86963020 -55308424 + HAL1b LINE L1 410 488 -860 2071 116 0 0 chr9 86963020 86963297 -55308147 + AluSg SINE Alu 2 278 -32 201 44 22 44 chr9 86963299 86963344 -55308100 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 588 251 137 78 chr9 86963344 86963758 -55307686 + HAL1b LINE L1 488 942 -406 1798 187 102 19 chr9 86963809 86964231 -55307213 - MSTB2 LTR MaLR 0 457 1 595 234 43 33 chr9 86965530 86965714 -55305730 + MLT1D LTR MaLR 1 186 -319 2470 78 0 0 chr9 86965721 86966030 -55305414 + AluY SINE Alu 1 309 -2 457 268 18 12 chr9 86966035 86966199 -55305245 + L1MC4 LINE L1 6916 7080 -962 1303 217 139 16 chr9 86966205 86966735 -55304709 + L1MC4 LINE L1 7162 7713 -95 946 227 101 52 chr9 86966836 86967015 -55304429 + L1ME1 LINE L1 5756 5925 -241 2018 134 14 0 chr9 86967015 86967298 -55304146 - AluSx SINE Alu -25 287 1 946 227 101 52 chr9 86967298 86967506 -55303938 + L1ME1 LINE L1 5925 6162 -4 1034 183 5 5 chr9 86967657 86967843 -55303601 - AluJb SINE Alu -31 281 96 1144 170 89 0 chr9 86967985 86968255 -55303189 - L1MB3 LINE L1 -8 6175 5882 1531 147 27 17 chr9 86968567 86968867 -55302577 + L1MA4 LINE L1 5998 6300 0 202 110 14 68 chr9 86969080 86969153 -55302291 + (TTTA)n Simple_repeat Simple_repeat 1 69 0 23 0 0 0 chr9 86969153 86969176 -55302268 + AT_rich Low_complexity Low_complexity 1 23 0 239 56 0 0 chr9 86970452 86970488 -55300956 - L1MA6 LINE L1 -10 6290 6255 226 274 229 13 chr9 86970588 86970691 -55300753 - MIR SINE MIR -45 217 138 1353 194 13 74 chr9 86970691 86970772 -55300672 - AluJo SINE Alu -22 290 206 1670 157 3 47 chr9 86970772 86971091 -55300353 - AluJo SINE Alu -7 305 1 1353 194 13 74 chr9 86971091 86971176 -55300268 - AluJo SINE Alu -106 206 117 1852 169 0 3 chr9 86971176 86971472 -55299972 - AluSx SINE Alu -17 295 1 1353 194 13 74 chr9 86971472 86971613 -55299831 - AluJo SINE Alu -195 117 1 226 274 229 13 chr9 86971613 86971662 -55299782 - MIR SINE MIR -124 138 32 235 267 0 0 chr9 86971662 86971741 -55299703 + (TA)n Simple_repeat Simple_repeat 1 79 0 2479 80 0 0 chr9 86971741 86972043 -55299401 - AluY SINE Alu -9 302 1 499 241 90 61 chr9 86972052 86972363 -55299081 - L1ME4a LINE L1 -181 5940 5621 184 286 71 18 chr9 86972757 86972813 -55298631 + L2 LINE L2 3201 3259 -13 192 350 80 10 chr9 86973015 86973115 -55298329 - MIR SINE MIR -67 141 35 316 137 0 0 chr9 86973813 86973864 -55297580 - L1PA14 LINE L1 -16 6145 6095 10866 177 32 4 chr9 86973876 86977006 -55294438 - L1PA12 LINE L1 -2143 5441 2227 21 0 0 0 chr9 86977247 86977268 -55294176 + AT_rich Low_complexity Low_complexity 1 21 0 1072 206 50 10 chr9 86977631 86977932 -55293512 + L1ME1 LINE L1 2707 3019 -3127 2060 114 11 0 chr9 86977932 86978213 -55293231 - AluSx SINE Alu -7 305 22 687 117 19 10 chr9 86978215 86978318 -55293126 + AluJb SINE Alu 190 293 -19 1048 249 98 9 chr9 86978326 86978764 -55292680 + L1ME1 LINE L1 3050 3526 -2620 2309 216 75 44 chr9 86978778 86979592 -55291852 + L1ME1 LINE L1 3593 4431 -1715 2059 198 106 41 chr9 86979634 86979720 -55291724 + L1ME1 LINE L1 5392 5471 -695 2270 99 0 0 chr9 86979720 86980012 -55291432 + AluSg1 SINE Alu 1 292 -17 2059 198 106 41 chr9 86980012 86980636 -55290808 + L1ME1 LINE L1 5471 6148 -18 22 0 0 0 chr9 86980779 86980801 -55290643 + AT_rich Low_complexity Low_complexity 1 22 0 488 144 0 11 chr9 86981935 86982025 -55289419 - Tigger4(Zombi) DNA MER2_type -3 2728 2640 1854 133 8 0 chr9 86982025 86982288 -55289156 - AluSq SINE Alu -48 265 1 907 220 13 30 chr9 86982375 86982607 -55288837 - MER82 DNA MER2_type -415 238 11 551 299 159 14 chr9 86982647 86983069 -55288375 - HAL1 LINE L1 -962 1545 1063 1739 109 102 0 chr9 86983913 86984201 -55287243 + AluSx SINE Alu 1 314 0 2457 52 7 16 chr9 86984497 86984804 -55286640 - AluY SINE Alu -7 304 1 33 0 0 23 chr9 86984866 86984888 -55286556 + AT_rich Low_complexity Low_complexity 1 22 -21 2155 101 21 0 chr9 86984888 86985175 -55286269 + AluSp SINE Alu 1 293 -20 33 0 0 23 chr9 86985175 86985196 -55286248 + AT_rich Low_complexity Low_complexity 22 43 0 1698 142 25 11 chr9 86985397 86985679 -55285765 - AluJb SINE Alu -26 286 1 241 185 25 25 chr9 86985754 86985835 -55285609 + (TA)n Simple_repeat Simple_repeat 2 82 0 401 30 90 30 chr9 86985892 86986025 -55285419 + (TA)n Simple_repeat Simple_repeat 1 141 0 2005 117 31 0 chr9 86986137 86986427 -55285017 - AluSg1 SINE Alu -10 299 1 26 50 0 0 chr9 86987424 86987464 -55283980 + AT_rich Low_complexity Low_complexity 1 40 0 610 221 23 8 chr9 86988953 86989084 -55282360 - FLAM_A SINE Alu 0 133 1 802 265 22 0 chr9 86989480 86989665 -55281779 - MER5A DNA MER1_type 0 189 1 26 0 0 0 chr9 86990030 86990056 -55281388 + AT_rich Low_complexity Low_complexity 1 26 0 227 278 241 33 chr9 86991728 86991940 -55279504 - L2 LINE L2 0 3272 3017 2155 103 3 7 chr9 86993194 86993486 -55277958 + AluSx SINE Alu 1 291 -21 762 261 60 25 chr9 86993721 86994089 -55277355 + L1MC4a LINE L1 5529 5824 -297 33 56 0 0 chr9 86994470 86994524 -55276920 + AT_rich Low_complexity Low_complexity 1 54 0 1435 186 82 7 chr9 86994579 86994858 -55276586 + AluJb SINE Alu 1 300 -12 240 254 88 35 chr9 86995620 86995734 -55275710 - L3b LINE CR1 -216 1367 1248 21 0 0 0 chr9 86997257 86997278 -55274166 + AT_rich Low_complexity Low_complexity 1 21 0 631 218 8 0 chr9 86997864 86997988 -55273456 - FLAM_A SINE Alu -5 137 13 623 291 213 26 chr9 86998261 86998886 -55272558 - L2 LINE L2 -356 2958 2217 463 113 0 25 chr9 86999345 86999425 -55272019 - MLT1B LTR MaLR -309 81 4 305 103 4 6 chr9 86999456 86999726 -55271718 + AluSq SINE Alu 1 335 0 203 294 22 43 chr9 86999728 86999820 -55271624 - L2 LINE L2 -26 3287 3198 622 283 133 17 chr9 86999918 87000151 -55271293 - MIR SINE MIR -1 261 2 2119 125 0 16 chr9 87000489 87000792 -55270652 - AluSx SINE Alu -14 298 1 364 250 28 35 chr9 87000895 87001109 -55270335 + LTR45 LTR ERV1 314 522 -9 570 230 77 25 chr9 87001206 87001402 -55270042 - L1ME2 LINE L1 -15 6149 5944 1946 164 0 31 chr9 87002257 87002574 -55268870 + AluJb SINE Alu 1 307 -5 1115 234 58 3 chr9 87002574 87002882 -55268562 + L1ME1 LINE L1 3888 4212 -1934 1644 210 65 53 chr9 87002990 87003343 -55268101 + L1ME1 LINE L1 5574 5921 -413 2151 125 0 3 chr9 87003343 87003640 -55267804 + AluSx SINE Alu 1 296 -16 1644 210 65 53 chr9 87003640 87003899 -55267545 + L1ME1 LINE L1 5921 6334 0 2129 112 0 3 chr9 87003911 87004222 -55267222 + AluSx SINE Alu 1 310 0 230 348 22 0 chr9 87004293 87004428 -55267016 - L1MC4a LINE L1 -1872 5936 5799 1503 144 169 34 chr9 87006038 87006475 -55264969 + LTR54B LTR ERV1 1 496 -2 944 240 16 80 chr9 87006749 87007124 -55264320 + MLT1A2 LTR MaLR 1 351 -23 210 270 27 14 chr9 87007188 87007262 -55264182 - L2 LINE L2 -2 3311 3237 1330 158 49 14 chr9 87007441 87007726 -55263718 + MLT1B LTR MaLR 93 387 -3 2194 102 10 3 chr9 87007769 87008063 -55263381 + AluSx SINE Alu 1 296 -16 1833 125 91 3 chr9 87008489 87008776 -55262668 - AluJb SINE Alu 0 312 1 363 228 24 63 chr9 87008776 87008903 -55262541 + MER74B LTR ERVL 73 194 -428 2352 88 0 0 chr9 87008909 87009204 -55262240 - AluY SINE Alu -9 302 8 1890 178 22 40 chr9 87009283 87009727 -55261717 + MER74A LTR ERVL 123 558 0 294 148 0 0 chr9 87010410 87010464 -55260980 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 1931 145 3 23 chr9 87010464 87010641 -55260803 - AluSx SINE Alu -4 308 138 2393 74 0 0 chr9 87010641 87010940 -55260504 - AluY SINE Alu -12 299 1 1931 145 3 23 chr9 87010940 87011072 -55260372 - AluSx SINE Alu -174 138 5 21 0 0 0 chr9 87011671 87011692 -55259752 + AT_rich Low_complexity Low_complexity 1 21 0 2086 107 4 0 chr9 87011710 87011990 -55259454 + AluSx SINE Alu 12 292 -20 545 171 62 34 chr9 87012976 87013122 -55258322 - AluJo SINE Alu -84 228 79 5265 45 8 2 chr9 87013154 87013798 -55257646 - L1PA5 LINE L1 -6 6148 5501 1074 192 154 3 chr9 87013964 87014302 -55257142 - Charlie4a DNA MER1_type -33 475 87 997 213 25 8 chr9 87014302 87014546 -55256898 - LTR40b LTR ERVL 0 462 215 498 133 62 143 chr9 87014542 87014634 -55256810 + Charlie1 DNA MER1_type 2562 2629 -132 * 2300 119 0 0 chr9 87014634 87014946 -55256498 - AluSx SINE Alu 0 312 1 498 133 62 143 chr9 87014946 87015063 -55256381 + Charlie1 DNA MER1_type 2629 2754 -7 32 0 0 0 chr9 87015114 87015146 -55256298 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr9 87015174 87015197 -55256247 + AT_rich Low_complexity Low_complexity 1 23 0 242 54 0 27 chr9 87015720 87015757 -55255687 + (TGG)n Simple_repeat Simple_repeat 3 38 0 2055 108 31 7 chr9 87015975 87016262 -55255182 - AluSp SINE Alu -19 294 1 570 223 114 111 chr9 87016591 87017160 -55254284 - MLT1G1 LTR MaLR 0 595 20 2306 96 0 16 chr9 87017238 87017541 -55253903 + AluSq SINE Alu 1 298 -15 1197 257 92 19 chr9 87017583 87018050 -55253394 + MLT1J LTR MaLR 3 503 -8 2237 116 0 10 chr9 87018279 87018590 -55252854 + AluSx SINE Alu 1 308 -4 242 206 10 98 chr9 87018617 87018656 -55252788 - MER20B DNA MER1_type -690 93 52 2224 111 0 0 chr9 87018656 87018944 -55252500 + AluSq SINE Alu 6 293 -20 242 206 10 98 chr9 87018944 87019006 -55252438 - MER20B DNA MER1_type -731 52 1 204 97 0 0 chr9 87019009 87019040 -55252404 + (TG)n Simple_repeat Simple_repeat 2 32 0 987 167 31 23 chr9 87019059 87019317 -55252127 - L1MA4 LINE L1 -1 6299 6040 800 179 10 20 chr9 87019319 87019520 -55251924 - L1MA4 LINE L1 -62 6238 6040 783 195 15 10 chr9 87019517 87019717 -55251727 - L1MA4 LINE L1 -56 6244 6044 * 791 181 15 19 chr9 87019721 87019926 -55251518 - L1MA4 LINE L1 -57 6243 6040 * 797 180 15 19 chr9 87019923 87020129 -55251315 - L1MA4 LINE L1 -56 6244 6040 783 195 15 10 chr9 87020126 87020326 -55251118 - L1MA4 LINE L1 -56 6244 6044 * 777 196 15 10 chr9 87020330 87020529 -55250915 - L1MA4 LINE L1 -57 6243 6044 763 201 15 10 chr9 87020533 87020732 -55250712 - L1MA4 LINE L1 -57 6243 6044 777 196 15 10 chr9 87020736 87020935 -55250509 - L1MA4 LINE L1 -57 6243 6044 777 196 15 10 chr9 87020939 87021138 -55250306 - L1MA4 LINE L1 -57 6243 6044 1599 185 21 13 chr9 87021142 87021520 -55249924 - L1MA4 LINE L1 -57 6243 5863 2291 90 7 3 chr9 87021684 87021983 -55249461 - AluY SINE Alu -11 300 1 2129 122 3 10 chr9 87021983 87022279 -55249165 - AluSx SINE Alu -18 294 1 1718 147 0 36 chr9 87022510 87022817 -55248627 - AluJb SINE Alu -11 301 6 25 90 0 0 chr9 87023993 87024060 -55247384 + GC_rich Low_complexity Low_complexity 1 67 0 397 244 99 93 chr9 87024662 87024834 -55246610 - MER5B DNA MER1_type 0 178 6 1773 173 130 8 chr9 87025765 87026118 -55245326 - MSTD LTR MaLR 0 396 1 5149 236 35 61 chr9 87026124 87026209 -55245235 - MSTD-int LTR MaLR 0 1735 1649 1687 172 0 11 chr9 87026209 87026519 -55244925 - AluJb SINE Alu 0 308 2 5149 236 35 61 chr9 87026519 87027814 -55243630 - MSTD-int LTR MaLR -86 1649 389 1341 137 24 5 chr9 87027814 87028026 -55243418 + Tigger2 DNA MER2_type 2503 2718 0 855 215 139 43 chr9 87028177 87028587 -55242857 + MLT1D LTR MaLR 1 505 0 1072 276 89 22 chr9 87028602 87028971 -55242473 + MLT1K LTR MaLR 193 586 -2 695 134 30 15 chr9 87029006 87029140 -55242304 + MER53 DNA DNA 37 172 -17 13274 92 17 51 chr9 87029759 87032201 -55239243 - L1P3 LINE L1 -4012 2449 2 382 337 75 11 chr9 87032204 87032391 -55239053 - L1M4 LINE L1 -983 5163 4965 714 136 51 25 chr9 87032552 87032670 -55238774 - FRAM SINE Alu -22 154 34 205 211 0 0 chr9 87032864 87032902 -55238542 - L2 LINE L2 -15 3298 3261 231 242 48 32 chr9 87032923 87032985 -55238459 + MIR SINE MIR 14 76 -186 424 258 31 0 chr9 87033129 87033226 -55238218 + MIR SINE MIR 163 262 0 2000 126 16 13 chr9 87034075 87034385 -55237059 + AluSx SINE Alu 1 311 -1 1101 153 6 0 chr9 87034388 87034564 -55236880 + AluSg/x SINE Alu 121 297 -15 525 207 129 7 chr9 87035101 87035241 -55236203 + MER58A DNA MER1_type 1 157 0 815 121 0 40 chr9 87035634 87035758 -55235686 + FLAM_C SINE Alu 7 125 -18 2076 102 30 0 chr9 87035782 87036085 -55235359 + AluSp SINE Alu 1 312 -1 560 158 43 86 chr9 87036125 87036209 -55235235 + MER58B DNA MER1_type 4 81 -260 1881 128 0 62 chr9 87036209 87036529 -55234915 - AluSx SINE Alu -12 300 1 560 158 43 86 chr9 87036529 87036583 -55234861 + MER58B DNA MER1_type 81 136 -205 250 270 95 95 chr9 87036882 87037095 -55234349 + MIR3 SINE MIR 2 212 -50 1190 198 32 0 chr9 87037186 87037403 -55234041 + MER58B DNA MER1_type 118 341 0 627 183 10 0 chr9 87037411 87037515 -55233929 + MER5A DNA MER1_type 1 105 -84 558 261 52 26 chr9 87037529 87037759 -55233685 + Charlie7 DNA MER1_type 438 673 -1939 270 273 23 97 chr9 87040499 87040675 -55230769 + MIR3 SINE MIR 6 168 -40 283 233 0 41 chr9 87041363 87041509 -55229935 + GA-rich Low_complexity Low_complexity 1 140 0 210 200 35 26 chr9 87041573 87041688 -55229756 + GA-rich Low_complexity Low_complexity 1 116 0 197 363 50 30 chr9 87043354 87043657 -55227787 + L2 LINE L2 2478 2786 -528 243 222 19 0 chr9 87044134 87044188 -55227256 + LTR33A LTR ERVL 440 494 -29 2116 108 0 0 chr9 87044741 87045036 -55226408 + AluSg SINE Alu 1 295 -15 1705 131 52 0 chr9 87045908 87046206 -55225238 - AluSx SINE Alu 0 312 1 449 250 112 7 chr9 87046460 87046612 -55224832 + MLT1G1 LTR MaLR 1 168 -399 1150 216 129 47 chr9 87046619 87046702 -55224742 + MLT1C LTR MaLR 8 83 -384 2102 101 0 23 chr9 87046702 87047032 -55224412 + AluSx SINE Alu 1 312 0 1150 216 129 47 chr9 87047032 87047373 -55224071 + MLT1C LTR MaLR 83 467 0 800 280 120 12 chr9 87047419 87047744 -55223700 + MLT1G1 LTR MaLR 236 595 0 2085 108 0 3 chr9 87048868 87049164 -55222280 - AluSg SINE Alu -15 295 1 2141 105 0 0 chr9 87049279 87049573 -55221871 + AluSg1 SINE Alu 7 300 -9 325 179 51 51 chr9 87049977 87050055 -55221389 + MER112 DNA MER1_type 8 85 -175 1905 118 0 7 chr9 87050175 87050455 -55220989 - AluSp SINE Alu -35 278 1 739 268 85 17 chr9 87050963 87051198 -55220246 + MIR SINE MIR 12 262 0 1713 159 71 37 chr9 87051312 87051665 -55219779 - MLT1A1 LTR MaLR 0 365 1 218 371 19 0 chr9 87051822 87051927 -55219517 - MIR SINE MIR -10 252 146 274 259 54 0 chr9 87052077 87052189 -55219255 + L1MC5 LINE L1 7780 7897 -64 180 0 0 0 chr9 87052337 87052357 -55219087 + (T)n Simple_repeat Simple_repeat 1 20 0 781 175 169 0 chr9 87052677 87052854 -55218590 + MER3 DNA MER1_type 3 209 0 188 294 119 40 chr9 87053197 87053323 -55218121 + MER5B DNA MER1_type 6 141 -37 1691 151 52 41 chr9 87053558 87053902 -55217542 + MER7A DNA MER2_type 1 346 0 299 299 86 10 chr9 87054529 87054726 -55216718 - L1ME2 LINE L1 -267 5897 5686 230 259 201 22 chr9 87054761 87054900 -55216544 - MER112 DNA MER1_type -6 254 91 2050 102 24 3 chr9 87054902 87055196 -55216248 - AluSx SINE Alu -12 300 1 1125 155 5 10 chr9 87055231 87055424 -55216020 + AluJo SINE Alu 37 228 -84 12289 92 25 3 chr9 87055525 87057999 -55213445 + L1PA7 LINE L1 3636 6153 -1 414 272 115 8 chr9 87058115 87058346 -55213098 + L1MC4a LINE L1 5258 5394 -772 1997 115 10 7 chr9 87058417 87058712 -55212732 - AluSg SINE Alu -13 297 2 25 0 0 0 chr9 87058722 87058747 -55212697 + AT_rich Low_complexity Low_complexity 1 25 0 447 183 197 0 chr9 87058812 87058954 -55212490 - L1MD3 LINE L1 -3 7992 7823 * 971 264 46 19 chr9 87058930 87059237 -55212207 - L1MC4a LINE L1 -314 7494 7180 1005 239 29 45 chr9 87059394 87059704 -55211740 - MER46C DNA MER2_type -26 312 8 1896 142 0 13 chr9 87059793 87060096 -55211348 + AluSx SINE Alu 1 299 -13 1523 167 19 0 chr9 87060112 87060370 -55211074 - MER2 DNA MER2_type -82 263 1 257 335 80 28 chr9 87060373 87060585 -55210859 + L1MC4a LINE L1 5689 5911 -1897 372 240 8 101 chr9 87060650 87060741 -55210703 + MER5B DNA MER1_type 18 95 -83 1475 118 3 167 chr9 87060741 87061113 -55210331 + AluJb SINE Alu 1 311 -1 372 240 8 101 chr9 87061113 87061150 -55210294 + MER5B DNA MER1_type 95 134 -44 1611 81 9 0 chr9 87061155 87061366 -55210078 + AluY SINE Alu 1 213 -98 1215 137 0 5 chr9 87061366 87061556 -55209888 - AluSx SINE Alu -123 189 1 865 168 41 10 chr9 87061556 87061752 -55209692 - L1ME2 LINE L1 -229 5935 5734 913 113 0 0 chr9 87062156 87062280 -55209164 + AluY SINE Alu 59 182 -129 267 104 62 21 chr9 87062870 87062918 -55208526 + FLAM_A SINE Alu 9 58 -74 312 200 71 24 chr9 87062956 87063041 -55208403 + MIR3 SINE MIR 113 201 -7 4575 137 22 31 chr9 87064506 87065285 -55206159 + LTR1 LTR ERV1 1 772 -13 2254 73 0 29 chr9 87065285 87065599 -55205845 - AluY SINE Alu -6 305 1 343 308 105 0 chr9 87065803 87065946 -55205498 - L3 LINE CR1 -124 1453 1296 1955 117 6 32 chr9 87066373 87066689 -55204755 + AluSq SINE Alu 1 308 -5 1129 213 119 14 chr9 87066950 87067303 -55204141 + L1MC4a LINE L1 7419 7808 0 2039 106 17 0 chr9 87067378 87067670 -55203774 + AluSg SINE Alu 1 297 -13 254 250 0 0 chr9 87067943 87067999 -55203445 + L1MC5 LINE L1 7030 7085 -876 2151 113 3 0 chr9 87068000 87068311 -55203133 - AluSq SINE Alu -1 312 1 642 86 0 0 chr9 87068410 87068503 -55202941 + AluSg/x SINE Alu 215 307 -3 397 279 33 0 chr9 87068580 87068702 -55202742 + L1MC5 LINE L1 7312 7437 -524 1993 123 0 3 chr9 87068716 87069017 -55202427 - AluY SINE Alu -11 300 1 300 252 321 21 chr9 87069037 87069327 -55202117 + L1MC4 LINE L1 7044 7420 -622 351 196 71 9 chr9 87069335 87069447 -55201997 + L1MC4 LINE L1 7469 7587 -455 297 218 89 69 chr9 87069459 87069560 -55201884 - HAL1 LINE L1 -1700 807 705 2342 77 0 0 chr9 87070516 87070813 -55200631 - AluSg SINE Alu -13 297 1 198 0 0 0 chr9 87072222 87072244 -55199200 + (A)n Simple_repeat Simple_repeat 1 22 0 204 67 0 0 chr9 87072418 87072448 -55198996 + (A)n Simple_repeat Simple_repeat 1 30 0 1119 272 33 20 chr9 87073327 87073684 -55197760 + L1MB7 LINE L1 2568 2934 -3212 2081 91 0 72 chr9 87073684 87074015 -55197429 + AluSx SINE Alu 1 307 -5 1119 272 33 20 chr9 87074015 87074117 -55197327 + L1MB7 LINE L1 2934 3033 -3113 * 2623 203 21 102 chr9 87074113 87074424 -55197020 + L1MCa LINE L1 18 353 -6073 2081 109 6 6 chr9 87074424 87074737 -55196707 + AluSp SINE Alu 1 313 0 2623 203 21 102 chr9 87074737 87075169 -55196275 + L1MCa LINE L1 353 701 -5725 4091 176 39 36 chr9 87075176 87076239 -55195205 + L1MB7 LINE L1 4830 5892 -292 2301 81 0 0 chr9 87076239 87076536 -55194908 + AluSx SINE Alu 3 299 -13 4091 176 39 36 chr9 87076536 87076830 -55194614 + L1MB7 LINE L1 5892 6184 0 270 276 76 38 chr9 87076904 87077089 -55194355 + MIR SINE MIR 23 214 -48 1194 252 106 99 chr9 87077696 87078388 -55193056 + MER21B LTR ERV1 13 712 -151 2401 50 3 0 chr9 87078388 87078686 -55192758 + AluY SINE Alu 1 299 -12 1194 252 106 99 chr9 87078686 87078738 -55192706 + MER21B LTR ERV1 712 762 -101 247 264 187 58 chr9 87078768 87078923 -55192521 - MIR3 SINE MIR -17 191 17 236 286 14 0 chr9 87079794 87079864 -55191580 + MER117 DNA MER1_type 109 179 -18 1105 221 9 0 chr9 87080576 87080793 -55190651 - MER20 DNA MER1_type 0 219 1 31 0 0 0 chr9 87081184 87081215 -55190229 + AT_rich Low_complexity Low_complexity 1 31 0 2004 122 0 3 chr9 87081221 87081515 -55189929 + AluSq SINE Alu 1 293 -20 21 36 0 0 chr9 87081610 87081638 -55189806 + AT_rich Low_complexity Low_complexity 1 28 0 1560 129 80 11 chr9 87081640 87081924 -55189520 + AluSg SINE Alu 1 302 0 1961 120 10 7 chr9 87081942 87082241 -55189203 + AluSx SINE Alu 1 300 -12 183 80 0 0 chr9 87082247 87082272 -55189172 + (CA)n Simple_repeat Simple_repeat 2 26 0 298 308 79 23 chr9 87084027 87084241 -55187203 + L1ME1 LINE L1 5934 6159 -7 556 241 59 79 chr9 87084281 87084435 -55187009 + L1ME1 LINE L1 5788 5944 -222 23123 50 6 1 chr9 87084435 87088093 -55183351 - L1PA6 LINE L1 -6 6148 2473 556 241 59 79 chr9 87088093 87088278 -55183166 + L1ME1 LINE L1 5944 6120 -46 292 224 0 0 chr9 87088432 87088499 -55182945 - MER33 DNA MER1_type 0 363 297 1419 91 0 0 chr9 87089353 87089550 -55181894 + AluSp SINE Alu 117 313 0 2059 90 24 7 chr9 87089682 87089971 -55181473 + AluSc SINE Alu 1 294 -15 324 280 144 0 chr9 87090099 87090217 -55181227 + L2 LINE L2 3170 3304 -9 187 300 56 11 chr9 87090930 87091020 -55180424 + MIR SINE MIR 169 262 0 353 279 39 39 chr9 87091249 87091352 -55180092 + MIR SINE MIR 103 208 -54 1587 182 135 49 chr9 87091352 87091781 -55179663 - MER31B LTR ERV1 0 466 1 353 279 39 39 chr9 87091781 87091806 -55179638 + MIR SINE MIR 207 231 -31 215 100 17 67 chr9 87092229 87092289 -55179155 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 250 292 88 18 chr9 87092692 87092805 -55178639 + MIR SINE MIR 67 187 -75 1547 174 23 17 chr9 87093987 87094286 -55177158 - AluJo SINE Alu -11 301 1 2276 86 3 0 chr9 87094293 87094594 -55176850 - AluSp SINE Alu -11 302 1 455 123 27 64 chr9 87094804 87094991 -55176453 + (CACAC)n Simple_repeat Simple_repeat 1 180 0 524 298 38 50 chr9 87095341 87095394 -55176050 - MIR SINE MIR -26 236 184 1521 98 176 12 chr9 87095394 87095650 -55175794 - AluY SINE Alu -13 298 1 524 298 38 50 chr9 87095650 87095834 -55175610 - MIR SINE MIR -78 184 2 347 242 182 23 chr9 87095911 87096043 -55175401 - MER112 DNA MER1_type -100 160 8 2311 227 16 6 chr9 87096531 87097034 -55174410 + L1MB2 LINE L1 5610 6117 -54 26 30 0 0 chr9 87097669 87097702 -55173742 + AT_rich Low_complexity Low_complexity 1 33 0 2206 90 6 10 chr9 87097810 87098122 -55173322 - AluY SINE Alu 0 311 1 808 136 8 8 chr9 87098131 87098263 -55173181 - FRAM SINE Alu -24 152 21 374 220 0 11 chr9 87099497 87099588 -55171856 - MER33 DNA MER1_type 0 324 235 3820 172 24 61 chr9 87099588 87099746 -55171698 + L1MB7 LINE L1 5323 5485 -699 1969 119 46 0 chr9 87099746 87100031 -55171413 + AluSx SINE Alu 2 299 -13 2166 108 0 3 chr9 87100037 87100344 -55171100 + AluSx SINE Alu 5 310 -2 3820 172 24 61 chr9 87100344 87100931 -55170513 + L1MB7 LINE L1 5490 6041 -143 2222 97 0 16 chr9 87100931 87101242 -55170202 + AluSx SINE Alu 1 306 -6 3820 172 24 61 chr9 87101242 87101362 -55170082 + L1MB7 LINE L1 6041 6164 -20 707 195 169 0 chr9 87101369 87101564 -55169880 - MER33 DNA MER1_type -76 248 21 187 169 0 51 chr9 87101598 87101657 -55169787 + GA-rich Low_complexity Low_complexity 4 59 0 2308 77 16 13 chr9 87101918 87102230 -55169214 + AluSp SINE Alu 1 313 0 231 294 84 8 chr9 87102275 87102394 -55169050 + L1MC5 LINE L1 7619 7746 -215 1550 112 14 0 chr9 87102716 87102939 -55168505 + AluSg/x SINE Alu 74 299 -13 555 156 21 0 chr9 87103080 87103176 -55168268 - MER110A LTR ERV1 -292 176 79 1737 119 29 58 chr9 87103188 87103493 -55167951 + AluSx SINE Alu 1 297 -10 279 0 0 0 chr9 87103493 87103524 -55167920 + (TA)n Simple_repeat Simple_repeat 1 31 0 1843 115 80 0 chr9 87104494 87104781 -55166663 - AluSx SINE Alu 0 312 3 500 218 109 9 chr9 87105053 87105163 -55166281 + L2 LINE L2 3193 3313 0 2427 68 0 0 chr9 87105225 87105534 -55165910 + AluY SINE Alu 1 309 -2 2066 105 111 20 chr9 87106185 87106529 -55164915 - THE1C LTR MaLR 0 375 1 1283 275 97 31 chr9 87107664 87108108 -55163336 - MLT1J LTR MaLR -2 509 37 2375 200 18 16 chr9 87108121 87108621 -55162823 + MLT1D LTR MaLR 1 501 -4 207 100 0 0 chr9 87109014 87109044 -55162400 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 445 199 194 59 chr9 87109292 87109338 -55162106 + MIR SINE MIR 52 90 -172 2200 107 0 0 chr9 87109338 87109638 -55161806 - AluSg1 SINE Alu -9 300 1 445 199 194 59 chr9 87109638 87109777 -55161667 + MIR SINE MIR 90 262 0 419 247 38 51 chr9 87109924 87110082 -55161362 + L2 LINE L2 3158 3313 0 877 247 11 5 chr9 87110119 87110309 -55161135 - MLT1A2 LTR MaLR 0 374 184 9569 108 18 15 chr9 87210481 87210855 -55060589 - L1PBa LINE L1 -4122 2741 2370 2886 16 0 3 chr9 87210855 87211169 -55060275 + AluYb8 SINE Alu 1 313 -5 9569 108 18 15 chr9 87211169 87212750 -55058694 - L1PBa LINE L1 -4493 2370 636 1080 168 10 0 chr9 87212752 87212948 -55058496 - L1PBa LINE L1 -6663 200 3 552 163 0 0 chr9 87212959 87213088 -55058356 + CT-rich Low_complexity Low_complexity 1 129 0 508 285 38 63 chr9 87213849 87214211 -55057233 + MLT1H LTR MaLR 49 384 -25 418 127 0 0 chr9 87215290 87215353 -55056091 - MER41B LTR ERV1 0 635 573 5289 212 18 96 chr9 87215460 87215506 -55055938 + L1PBa LINE L1 2801 2849 -4013 2145 118 0 16 chr9 87215506 87215810 -55055634 + AluSg SINE Alu 5 303 -7 5289 212 18 96 chr9 87215810 87216826 -55054618 + L1PBa LINE L1 2849 3786 -3076 1238 89 0 0 chr9 87216826 87216983 -55054461 + AluSg/x SINE Alu 156 312 0 5289 212 18 96 chr9 87216983 87217778 -55053666 + L1PBa LINE L1 3786 4641 -2221 2205 223 23 4 chr9 87217766 87218323 -55053121 + L1 LINE L1 5479 6046 -816 * 2290 150 27 74 chr9 87218340 87218716 -55052728 + MSTB LTR MaLR 1 354 -72 2063 129 0 0 chr9 87218716 87218996 -55052448 + AluSg SINE Alu 1 280 -30 2290 150 27 74 chr9 87218996 87219066 -55052378 + MSTB LTR MaLR 354 426 0 8893 171 43 6 chr9 87219066 87220658 -55050786 + MSTB-int LTR MaLR 1 1651 0 2460 147 48 22 chr9 87220658 87221073 -55050371 + MSTB LTR MaLR 1 426 0 252 111 0 0 chr9 87221553 87221598 -55049846 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 2264 116 0 0 chr9 87221624 87221917 -55049527 + AluSx SINE Alu 1 293 -19 2036 113 3 40 chr9 87222167 87222469 -55048975 - AluSx SINE Alu -21 291 1 1137 155 0 0 chr9 87223206 87223374 -55048070 - AluSg/x SINE Alu -8 304 137 1112 233 36 70 chr9 87223629 87224016 -55047428 + MLT2D LTR ERVL 1 374 -40 417 260 136 17 chr9 87224064 87224299 -55047145 - L2 LINE L2 -898 2416 2154 2657 152 17 2 chr9 87224567 87224987 -55046457 + MSTB LTR MaLR 1 426 0 438 228 79 0 chr9 87225100 87225214 -55046230 + MER94 DNA DNA 1 123 -11 2156 139 0 0 chr9 87225314 87225617 -55045827 + AluSq SINE Alu 1 303 -10 24 53 0 0 chr9 87226670 87226708 -55044736 + AT_rich Low_complexity Low_complexity 1 38 0 701 165 17 9 chr9 87226734 87226849 -55044595 - FLAM_C SINE Alu -13 120 5 641 102 0 0 chr9 87226849 87226937 -55044507 + MSTD LTR MaLR 309 396 0 1089 230 32 68 chr9 87226937 87227246 -55044198 - L1MC3 LINE L1 -987 6798 6501 276 305 61 76 chr9 87227357 87227488 -55043956 - MIR3 SINE MIR -22 186 58 2024 129 24 3 chr9 87227752 87228065 -55043379 + AluSx SINE Alu 4 502 -39 975 96 22 11 chr9 87228065 87228243 -55043201 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2024 129 24 3 chr9 87228243 87228284 -55043160 + AluSx SINE Alu 502 541 0 950 211 60 22 chr9 87228510 87228742 -55042702 - MER21-int LTR ERV1 -2554 1637 1397 2221 107 0 7 chr9 87228965 87229273 -55042171 + AluSg SINE Alu 1 306 -4 22 35 0 0 chr9 87230291 87230320 -55041124 + AT_rich Low_complexity Low_complexity 1 29 0 2417 92 0 0 chr9 87230675 87230978 -55040466 - AluSg SINE Alu -7 303 1 353 270 67 0 chr9 87231032 87231121 -55040323 + L2 LINE L2 3215 3309 -4 22 0 0 0 chr9 87232124 87232146 -55039298 + AT_rich Low_complexity Low_complexity 1 22 0 233 191 85 0 chr9 87232435 87232482 -55038962 + L1M2 LINE L1 5287 5337 -996 * 15615 41 0 3 chr9 87232469 87234361 -55037083 - L1P LINE L1 -1450 4696 2811 1902 142 6 15 chr9 87234361 87234691 -55036753 + L1M2 LINE L1 5318 5644 -647 4007 97 43 22 chr9 87234891 87235020 -55036424 - MER39B LTR ERV1 0 622 497 2332 84 0 29 chr9 87235020 87235329 -55036115 + AluSq SINE Alu 1 300 -13 4007 97 43 22 chr9 87235329 87235816 -55035628 - MER39B LTR ERV1 -125 497 1 320 189 14 27 chr9 87235830 87235904 -55035540 + MLT1K LTR MaLR 512 584 -4 23 78 0 0 chr9 87236193 87236244 -55035200 + AT_rich Low_complexity Low_complexity 1 51 0 2067 119 14 0 chr9 87236425 87236710 -55034734 + AluSx SINE Alu 1 289 -23 585 298 139 0 chr9 87237356 87237564 -55033880 - MIR SINE MIR -11 251 15 2116 90 0 40 chr9 87237714 87238041 -55033403 + AluSx SINE Alu 2 312 0 622 245 53 100 chr9 87238067 87238186 -55033258 + L1MEc LINE L1 1679 1802 -4624 1965 117 57 0 chr9 87238186 87238467 -55032977 - AluY SINE Alu -14 297 1 622 245 53 100 chr9 87238467 87238613 -55032831 + L1MEc LINE L1 1802 1890 -4536 2281 109 6 3 chr9 87238613 87238924 -55032520 + AluSx SINE Alu 1 312 0 622 245 53 100 chr9 87238924 87238955 -55032489 + L1MEc LINE L1 1890 1921 -4505 2029 284 78 19 chr9 87239134 87239778 -55031666 + MER115 DNA AcHobo 11 692 -1 2278 110 0 0 chr9 87239807 87240097 -55031347 + AluSg SINE Alu 1 290 -20 219 36 0 0 chr9 87240113 87240141 -55031303 + (CA)n Simple_repeat Simple_repeat 1 28 0 1270 250 81 69 chr9 87240241 87240259 -55031185 + L1MEc LINE L1 2244 2260 -4166 1959 123 39 0 chr9 87240259 87240544 -55030900 + AluSp SINE Alu 1 296 -17 1270 250 81 69 chr9 87240544 87240781 -55030663 + L1MEc LINE L1 2260 2493 -3933 1930 149 3 26 chr9 87240781 87241083 -55030361 + AluJo SINE Alu 1 295 -17 1270 250 81 69 chr9 87241083 87241121 -55030323 + L1MEc LINE L1 2493 2529 -3897 2365 104 0 0 chr9 87241121 87241430 -55030014 + AluSg SINE Alu 1 309 -1 1270 250 81 69 chr9 87241430 87241853 -55029591 + L1MEc LINE L1 2529 2946 -3480 2139 98 4 0 chr9 87241853 87242127 -55029317 + AluSq SINE Alu 3 277 -36 225 0 0 0 chr9 87242130 87242155 -55029289 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1270 250 81 69 chr9 87242155 87242320 -55029124 + L1MEc LINE L1 2947 3113 -3313 787 189 189 34 chr9 87242472 87242710 -55028734 + L1ME3A LINE L1 5892 6166 -4 1875 123 3 68 chr9 87242747 87243073 -55028371 - AluSx SINE Alu -7 305 1 613 231 39 54 chr9 87243099 87243359 -55028085 + L1MC5 LINE L1 6960 7215 -746 1674 232 81 29 chr9 87243361 87243897 -55027547 - MLT1F1 LTR MaLR -2 565 10 3056 136 11 15 chr9 87243898 87244361 -55027083 + MER65C LTR ERV1 1 461 0 1028 254 77 73 chr9 87244523 87245177 -55026267 + L1MC5 LINE L1 7261 7916 -45 1585 191 3 44 chr9 87245327 87245508 -55025936 - AluJb SINE Alu -10 302 138 2299 92 3 16 chr9 87245508 87245812 -55025632 - AluSc SINE Alu -9 300 1 1585 191 3 44 chr9 87245812 87245945 -55025499 - AluJb SINE Alu -174 138 1 413 281 112 17 chr9 87245953 87246131 -55025313 - L1ME3A LINE L1 0 6170 5976 2197 115 0 3 chr9 87246149 87246444 -55025000 - AluSx SINE Alu -10 302 9 378 302 67 42 chr9 87246625 87247100 -55024344 - L1MEc LINE L1 -768 1722 1236 432 258 73 81 chr9 87247101 87247349 -55024095 - L1MEc LINE L1 -5016 1103 858 2303 102 0 13 chr9 87248166 87248480 -55022964 - AluSq SINE Alu -3 310 1 332 120 0 0 chr9 87249510 87249560 -55021884 - AluS SINE Alu -218 85 36 1449 113 14 5 chr9 87249560 87249781 -55021663 + AluSg/x SINE Alu 83 305 -7 229 265 24 48 chr9 87249924 87250007 -55021437 + MLT1L LTR MaLR 210 290 -325 394 206 11 0 chr9 87250173 87250265 -55021179 + L1MA6 LINE L1 5959 6051 -249 750 205 0 0 chr9 87250266 87250388 -55021056 + FLAM_A SINE Alu 1 122 -11 2036 127 35 0 chr9 87250397 87250681 -55020763 + AluJb SINE Alu 1 294 -18 1249 161 63 0 chr9 87250705 87250959 -55020485 + L1MA6 LINE L1 6030 6299 -1 1965 78 7 50 chr9 87250972 87251253 -55020191 + AluY SINE Alu 33 301 -10 232 238 75 25 chr9 87251261 87251341 -55020103 + MLT1J LTR MaLR 389 472 -39 2197 87 0 78 chr9 87251603 87252077 -55019367 - AluSx SINE Alu 0 448 1 1281 167 0 9 chr9 87252615 87252825 -55018619 - AluJb SINE Alu -13 299 92 2140 112 0 3 chr9 87253044 87253358 -55018086 - AluSq SINE Alu 0 313 1 1078 196 50 9 chr9 87253425 87253608 -55017836 - AluJo SINE Alu 0 312 117 279 0 0 0 chr9 87253608 87253639 -55017805 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1078 196 50 9 chr9 87253639 87253675 -55017769 - AluJo SINE Alu -195 117 84 220 313 16 16 chr9 87254578 87254642 -55016802 + L3b LINE CR1 1512 1575 -8 2460 105 131 11 chr9 87256048 87256430 -55015014 - MSTA LTR MaLR 0 428 1 2293 113 3 0 chr9 87256584 87256893 -55014551 - AluSq SINE Alu -3 310 1 24 53 0 0 chr9 87257018 87257056 -55014388 + AT_rich Low_complexity Low_complexity 1 38 0 913 247 181 48 chr9 87257121 87257595 -55013849 + MLT1H1 LTR MaLR 10 546 -9 249 98 0 0 chr9 87257847 87257888 -55013556 + (CA)n Simple_repeat Simple_repeat 2 42 0 333 118 0 0 chr9 87257891 87257942 -55013502 + (TA)n Simple_repeat Simple_repeat 1 51 0 2257 123 0 0 chr9 87259017 87259325 -55012119 - AluSx SINE Alu -4 308 1 2053 136 0 3 chr9 87259709 87260010 -55011434 - AluSx SINE Alu -12 300 1 2175 111 0 0 chr9 87260096 87260384 -55011060 + AluSc SINE Alu 1 288 -21 2171 215 36 7 chr9 87260636 87261188 -55010256 + L1M4 LINE L1 4777 5336 -810 711 214 6 54 chr9 87261224 87261392 -55010052 + L1MCa LINE L1 102 261 -6165 * 7408 165 94 48 chr9 87261379 87261768 -55009676 + L1MCa LINE L1 788 1158 -5268 2260 79 45 0 chr9 87261768 87262059 -55009385 + AluSg SINE Alu 1 304 -6 7408 165 94 48 chr9 87262059 87262561 -55008883 + L1MCa LINE L1 1158 1635 -4791 2284 110 3 3 chr9 87262561 87262871 -55008573 + AluSg SINE Alu 1 310 0 7408 165 94 48 chr9 87262871 87263111 -55008333 + L1MCa LINE L1 1635 1862 -4564 1019 113 0 0 chr9 87263111 87263244 -55008200 + FLAM_C SINE Alu 1 133 0 7408 165 94 48 chr9 87263244 87263753 -55007691 + L1MCa LINE L1 1862 2346 -4080 790 141 33 25 chr9 87263753 87263874 -55007570 - FLAM_A SINE Alu -11 122 1 7408 165 94 48 chr9 87263874 87264089 -55007355 + L1MCa LINE L1 2346 2550 -3876 2025 103 0 21 chr9 87264089 87264370 -55007074 + AluSx SINE Alu 1 275 -37 7408 165 94 48 chr9 87264370 87264385 -55007059 + L1MCa LINE L1 2550 2563 -3863 182 62 31 0 chr9 87264385 87264417 -55007027 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7408 165 94 48 chr9 87264417 87264798 -55006646 + L1MCa LINE L1 2563 3141 -3285 23 0 0 0 chr9 87265178 87265201 -55006243 + AT_rich Low_complexity Low_complexity 1 23 0 2100 101 11 3 chr9 87265277 87265564 -55005880 + AluSc SINE Alu 5 293 -16 357 174 124 58 chr9 87265582 87265703 -55005741 + L1ME4a LINE L1 5991 6119 -2 860 196 67 0 chr9 87265901 87266095 -55005349 + L1MB7 LINE L1 5977 6183 -1 674 289 15 34 chr9 87266343 87266609 -55004835 - MIR SINE MIR 0 262 2 2232 119 0 3 chr9 87266657 87266967 -55004477 - AluSx SINE Alu 0 312 4 2192 129 3 0 chr9 87266989 87267298 -55004146 - AluSg SINE Alu 0 310 1 757 224 31 31 chr9 87267728 87267920 -55003524 - LTR39 LTR ERV1 0 783 592 2022 139 3 0 chr9 87267924 87268218 -55003226 - AluSx SINE Alu -17 295 1 570 272 46 52 chr9 87268219 87268546 -55002898 - L2 LINE L2 -102 3211 2887 196 159 0 91 chr9 87268735 87268779 -55002665 - L2 LINE L2 -598 2716 2677 2342 90 0 0 chr9 87268983 87269271 -55002173 - AluSx SINE Alu -24 288 1 284 224 35 0 chr9 87269677 87269735 -55001709 + MER21B LTR ERV1 11 70 -793 1068 80 0 0 chr9 87269745 87269883 -55001561 - AluSp/q SINE Alu 0 313 176 580 249 48 29 chr9 87270097 87270306 -55001138 + HsTC2 DNA Tc2 32 244 -1654 982 166 184 0 chr9 87270311 87270528 -55000916 + MER33 DNA MER1_type 1 257 -67 783 143 9 0 chr9 87270542 87270654 -55000790 - FLAM_C SINE Alu -18 125 13 415 153 0 59 chr9 87270667 87270752 -55000692 + MER33 DNA MER1_type 284 363 0 442 154 44 96 chr9 87270809 87270945 -55000499 + HsTC2 DNA Tc2 1708 1836 -62 2263 110 0 0 chr9 87271229 87271519 -54999925 - AluSq SINE Alu -23 290 1 1781 187 56 1 chr9 87271542 87271979 -54999465 - L1MB2 LINE L1 0 6180 5688 1375 234 132 105 chr9 87273597 87273693 -54997751 - HAL1 LINE L1 -1347 1160 1068 1696 194 7 0 chr9 87273693 87273992 -54997452 + AluJb SINE Alu 1 301 -11 1375 234 132 105 chr9 87273992 87274417 -54997027 - HAL1 LINE L1 -1439 1068 656 2440 84 0 0 chr9 87274417 87274727 -54996717 - AluSx SINE Alu -2 310 1 421 190 0 0 chr9 87274729 87274808 -54996636 - L1PA16 LINE L1 -6 6160 6082 1375 234 132 105 chr9 87274808 87275400 -54996044 - HAL1 LINE L1 -1851 656 13 1802 185 80 113 chr9 87275813 87275842 -54995602 - LTR48B LTR ERV1 -1 643 615 2115 141 7 0 chr9 87275842 87276140 -54995304 - AluSx SINE Alu -12 300 1 1802 185 80 113 chr9 87276140 87276775 -54994669 - LTR48B LTR ERV1 -29 615 1 333 179 256 0 chr9 87277095 87277173 -54994271 - LTR48B LTR ERV1 -1 643 546 985 220 0 0 chr9 87277183 87277351 -54994093 - FAM SINE Alu -7 168 1 10829 172 67 63 chr9 87277375 87278208 -54993236 + LTR49-int LTR ERV1 1686 2515 -3816 252 0 0 0 chr9 87278208 87278236 -54993208 + (CA)n Simple_repeat Simple_repeat 2 29 0 10829 172 67 63 chr9 87278236 87278322 -54993122 + LTR49-int LTR ERV1 2515 2599 -3732 1888 151 7 0 chr9 87278322 87278626 -54992818 - AluSx SINE Alu 0 306 1 10829 172 67 63 chr9 87278626 87279887 -54991557 + LTR49-int LTR ERV1 2599 3854 -2477 784 238 0 24 chr9 87279887 87280051 -54991393 - FRAM SINE Alu -6 160 1 10829 172 67 63 chr9 87280051 87280102 -54991342 + LTR49-int LTR ERV1 3854 3903 -2428 2274 110 0 0 chr9 87280102 87280403 -54991041 + AluY SINE Alu 1 301 -10 10829 172 67 63 chr9 87280403 87281067 -54990377 + LTR49-int LTR ERV1 3903 4563 -1768 1973 145 6 25 chr9 87281067 87281385 -54990059 + AluSx SINE Alu 1 312 0 10829 172 67 63 chr9 87281385 87281558 -54989886 + LTR49-int LTR ERV1 4563 6328 -3 3862 125 24 8 chr9 87281560 87282146 -54989298 + LTR49 LTR ERV1 1 595 0 440 144 246 0 chr9 87282898 87283016 -54988428 + LTR23 LTR ERV1 1 147 -290 513 138 12 0 chr9 87283091 87283171 -54988273 + LTR23 LTR ERV1 161 241 -196 737 185 7 15 chr9 87283177 87283312 -54988132 + FLAM_A SINE Alu 7 140 -2 1211 113 26 10 chr9 87283334 87283529 -54987915 + LTR23 LTR ERV1 240 437 0 185 282 0 0 chr9 87283905 87283944 -54987500 + L2 LINE L2 3213 3251 -21 2335 95 3 0 chr9 87284354 87284660 -54986784 + AluY SINE Alu 1 307 -4 1018 145 0 127 chr9 87284717 87284938 -54986506 - 7SK RNA RNA 0 193 1 1083 191 54 47 chr9 87285025 87285323 -54986121 - L1MC2 LINE L1 0 6344 6045 812 148 16 0 chr9 87285324 87285452 -54985992 - AluJb SINE Alu -14 298 169 664 115 48 10 chr9 87286150 87286254 -54985190 - AluJb SINE Alu -120 192 85 1270 48 0 0 chr9 87286265 87286410 -54985034 - AluY SINE Alu -15 296 152 833 202 39 0 chr9 87286725 87286903 -54984541 - L1MB3 LINE L1 -11 6172 5988 556 111 0 0 chr9 87286904 87286976 -54984468 - L1M3 LINE L1 -427 5756 5685 519 279 85 0 chr9 87287054 87287154 -54984290 + MER5A DNA MER1_type 10 131 -58 2146 89 10 26 chr9 87287154 87287456 -54983988 - AluSx SINE Alu -15 297 1 519 279 85 0 chr9 87287456 87287520 -54983924 + MER5A DNA MER1_type 131 188 -1 1998 163 0 0 chr9 87287558 87287865 -54983579 - AluJb SINE Alu -5 307 1 222 270 0 32 chr9 87288571 87288634 -54982810 - MIR SINE MIR -170 92 32 1905 59 54 0 chr9 87289768 87290007 -54981437 - L1PA5 LINE L1 -8 6146 5895 268 282 271 11 chr9 87290130 87290318 -54981126 + MIR SINE MIR 2 238 -24 24 0 0 0 chr9 87291403 87291427 -54980017 + AT_rich Low_complexity Low_complexity 1 24 0 193 354 16 24 chr9 87291550 87291677 -54979767 + MIR3 SINE MIR 58 183 -25 1556 152 110 0 chr9 87293026 87293290 -54978154 - AluJb SINE Alu -19 293 1 1319 170 0 9 chr9 87293319 87293549 -54977895 + AluJb SINE Alu 85 312 0 24 32 0 0 chr9 87293650 87293681 -54977763 + AT_rich Low_complexity Low_complexity 1 31 0 42 0 0 0 chr9 87293857 87293899 -54977545 + AT_rich Low_complexity Low_complexity 1 42 0 1304 110 11 11 chr9 87293956 87294147 -54977297 + AluSg/x SINE Alu 114 304 -8 5644 134 66 76 chr9 87294148 87294995 -54976449 + Tigger3b DNA MER2_type 67 920 -2108 956 166 0 93 chr9 87294995 87295092 -54976352 - FAM SINE Alu -136 175 103 2209 98 3 7 chr9 87295092 87295387 -54976057 - AluSg SINE Alu -16 294 1 956 166 0 93 chr9 87295387 87295482 -54975962 - FAM SINE Alu -208 103 1 5644 134 66 76 chr9 87295482 87295498 -54975946 + Tigger3b DNA MER2_type 920 935 -2093 10130 28 1 0 chr9 87295498 87297403 -54974041 + L1PA3 LINE L1 4255 6159 0 5644 134 66 76 chr9 87297403 87297713 -54973731 + Tigger3b DNA MER2_type 935 1231 0 855 123 107 26 chr9 87297713 87297864 -54973580 - MER46A DNA MER2_type -75 161 -1 523 209 114 19 chr9 87298037 87298195 -54973249 + MIR SINE MIR 69 241 -21 768 183 8 8 chr9 87298511 87298637 -54972807 - FLAM_C SINE Alu -16 127 2 1786 204 46 0 chr9 87298958 87299287 -54972157 + MER2 DNA MER2_type 1 344 0 203 184 82 41 chr9 87299671 87299720 -54971724 + L2 LINE L2 3256 3306 -7 312 237 112 59 chr9 87299737 87299906 -54971538 + L1MC1 LINE L1 5726 5903 -1905 259 167 0 0 chr9 87300050 87300092 -54971352 - MER2 DNA MER2_type 0 345 304 * 393 218 77 0 chr9 87300090 87300168 -54971276 + MER20 DNA MER1_type 63 146 -73 463 234 72 42 chr9 87301322 87301489 -54969955 + MIR SINE MIR 59 230 -32 236 269 160 0 chr9 87301875 87301994 -54969450 - MER112 DNA MER1_type -106 154 17 3201 118 103 12 chr9 87302224 87302707 -54968737 - MER1A DNA MER1_type 0 527 1 2129 98 0 83 chr9 87302855 87303191 -54968253 + AluSx SINE Alu 1 308 -4 203 242 32 0 chr9 87304615 87304677 -54966767 + (TA)n Simple_repeat Simple_repeat 1 64 0 1800 161 3 20 chr9 87304677 87304976 -54966468 + AluJo SINE Alu 1 294 -18 2089 118 0 38 chr9 87306598 87306913 -54964531 + AluSg1 SINE Alu 1 303 -6 1268 185 87 0 chr9 87306963 87307273 -54964171 + AluJo SINE Alu 1 333 0 833 166 22 0 chr9 87307785 87307924 -54963520 + L1MB5 LINE L1 6032 6173 -1 21 0 0 0 chr9 87308642 87308663 -54962781 + GC_rich Low_complexity Low_complexity 1 21 0 2381 77 3 3 chr9 87310028 87310328 -54961116 + AluSx SINE Alu 1 300 -12 217 111 56 0 chr9 87310342 87310396 -54961048 + GA-rich Low_complexity Low_complexity 4 60 0 1756 88 122 11 chr9 87310411 87310674 -54960770 + AluSg SINE Alu 1 292 -18 231 36 0 0 chr9 87310687 87310715 -54960729 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 369 232 50 10 chr9 87310791 87310890 -54960554 + MIR SINE MIR 158 260 -2 1289 185 69 0 chr9 87310923 87311183 -54960261 + L1MC1 LINE L1 6055 6332 -1 199 331 169 12 chr9 87311835 87311995 -54959449 - MIR SINE MIR -50 212 28 2225 102 0 0 chr9 87312310 87312613 -54958831 - AluSx SINE Alu 0 303 1 477 237 111 26 chr9 87313269 87313459 -54957985 + HAL1b LINE L1 331 536 -812 231 193 48 12 chr9 87316025 87316108 -54955336 + L1M2 LINE L1 5353 5438 -862 659 197 44 11 chr9 87316363 87316515 -54954929 + MIR SINE MIR 106 262 0 1896 112 13 64 chr9 87316890 87317204 -54954240 + AluSx SINE Alu 1 298 -14 907 299 58 36 chr9 87317208 87317637 -54953807 + L1ME LINE L1 4962 5380 -782 2127 121 0 3 chr9 87317637 87317927 -54953517 + AluSq SINE Alu 21 309 -4 907 299 58 36 chr9 87317927 87318336 -54953108 + L1ME LINE L1 5380 5816 -346 850 178 6 47 chr9 87318366 87318535 -54952909 - FAM SINE Alu -12 163 2 1097 158 0 0 chr9 87318651 87318816 -54952628 + AluSg/x SINE Alu 137 301 -11 23 0 0 0 chr9 87318929 87318952 -54952492 + AT_rich Low_complexity Low_complexity 1 23 0 984 138 31 13 chr9 87318960 87319119 -54952325 + FRAM SINE Alu 1 162 -14 1623 156 44 7 chr9 87319500 87319770 -54951674 + AluJo SINE Alu 1 280 -32 234 287 40 40 chr9 87319946 87320047 -54951397 + L1ME LINE L1 5573 5673 -448 1661 127 4 8 chr9 87320129 87320374 -54951070 - AluSx SINE Alu -68 244 1 844 186 21 123 chr9 87320374 87320610 -54950834 + Charlie2 DNA MER1_type 68 279 -2583 1566 184 88 134 chr9 87320695 87321069 -54950375 + Charlie2 DNA MER1_type 1918 2308 -554 1086 39 0 0 chr9 87321069 87321196 -54950248 - L1PA4 LINE L1 0 6155 6029 1566 184 88 134 chr9 87321196 87321806 -54949638 + Charlie2 DNA MER1_type 2308 2857 -5 225 235 73 0 chr9 87321825 87321893 -54949551 + L1ME LINE L1 5731 5803 -361 873 276 72 0 chr9 87322458 87322679 -54948765 - MIR SINE MIR -13 249 13 315 310 30 0 chr9 87322933 87323033 -54948411 - MIR SINE MIR -74 188 86 595 201 128 7 chr9 87323595 87323744 -54947700 - MIR SINE MIR -22 240 74 795 198 0 0 chr9 87323875 87323996 -54947448 + FLAM_C SINE Alu 2 122 -21 542 262 77 89 chr9 87324038 87324684 -54946760 + L2 LINE L2 2673 3313 0 257 355 48 24 chr9 87324839 87325005 -54946439 + MER5B DNA MER1_type 4 173 -5 538 268 28 39 chr9 87326199 87326378 -54945066 + MIR SINE MIR 86 262 0 312 278 113 7 chr9 87327032 87327183 -54944261 - L1ME4a LINE L1 -1 6120 5954 813 114 0 0 chr9 87328839 87328944 -54942500 - AluSq/x SINE Alu -205 107 3 2171 103 31 0 chr9 87328946 87329237 -54942207 - AluSq SINE Alu -13 300 1 21 0 0 0 chr9 87329266 87329287 -54942157 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 87329640 87329661 -54941783 + AT_rich Low_complexity Low_complexity 1 21 0 476 231 216 0 chr9 87330057 87330191 -54941253 + MER5A DNA MER1_type 27 189 0 1271 121 129 11 chr9 87330298 87330570 -54940874 + L1MA7 LINE L1 5986 6289 -2 22 0 0 0 chr9 87331142 87331164 -54940280 + AT_rich Low_complexity Low_complexity 1 22 0 648 159 35 9 chr9 87331348 87331461 -54939983 + FLAM_C SINE Alu 3 118 -15 1875 133 31 17 chr9 87332853 87333146 -54938298 + AluSx SINE Alu 1 297 -15 2206 94 7 13 chr9 87333316 87333615 -54937829 + AluSx SINE Alu 1 297 -15 29 60 0 0 chr9 87333853 87333903 -54937541 + AT_rich Low_complexity Low_complexity 1 50 0 2351 91 3 3 chr9 87334040 87334349 -54937095 + AluSq SINE Alu 1 309 -4 886 120 0 49 chr9 87336399 87336541 -54934903 - FLAM_C SINE Alu -2 141 7 7147 50 9 34 chr9 87337894 87339497 -54931947 + SVA Other Other 1 1408 0 488 272 57 20 chr9 87339808 87339967 -54931477 - MIR SINE MIR -30 178 25 372 296 63 21 chr9 87340379 87340521 -54930923 - MIR SINE MIR -109 153 6 234 217 83 17 chr9 87341452 87341512 -54929932 + L2 LINE L2 3189 3252 -20 674 214 36 36 chr9 87341673 87341897 -54929547 + L1MC4 LINE L1 7819 8042 0 243 0 0 0 chr9 87341970 87341997 -54929447 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 214 290 116 0 chr9 87342385 87342454 -54928990 + L2 LINE L2 3147 3223 -49 323 269 62 88 chr9 87342562 87342652 -54928792 - MIR3 SINE MIR -3 205 114 717 145 77 8 chr9 87342652 87342769 -54928675 + FLAM_C SINE Alu 1 125 -8 323 269 62 88 chr9 87342769 87342871 -54928573 - MIR3 SINE MIR -94 114 18 1092 181 72 114 chr9 87343131 87343490 -54927954 - MER2 DNA MER2_type 0 345 2 183 42 0 0 chr9 87344252 87344276 -54927168 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 811 192 29 17 chr9 87344594 87344766 -54926678 - MER58A DNA MER1_type -50 174 1 208 363 10 39 chr9 87344839 87344941 -54926503 - MIR3 SINE MIR -107 101 3 21 36 0 0 chr9 87346061 87346089 -54925355 + AT_rich Low_complexity Low_complexity 1 28 0 1074 181 0 0 chr9 87346159 87346336 -54925108 - AluJb SINE Alu -10 302 126 24 0 0 70 chr9 87346561 87346604 -54924840 + AT_rich Low_complexity Low_complexity 1 40 0 2232 107 0 13 chr9 87347401 87347700 -54923744 + AluSx SINE Alu 1 295 -17 1684 191 0 0 chr9 87347777 87348059 -54923385 + AluSx SINE Alu 1 282 -30 1378 196 0 13 chr9 87348187 87348422 -54923022 + AluJb SINE Alu 64 295 -17 198 171 0 0 chr9 87349501 87349542 -54921902 + CT-rich Low_complexity Low_complexity 2 42 0 282 324 59 0 chr9 87352459 87352535 -54918909 + MIR SINE MIR 49 119 -143 993 225 27 19 chr9 87352535 87352793 -54918651 + MIR SINE MIR 3 262 0 282 324 59 0 chr9 87352793 87352852 -54918592 + MIR SINE MIR 119 192 -70 409 301 22 33 chr9 87352939 87353122 -54918322 - MIR3 SINE MIR -2 206 26 829 250 121 0 chr9 87353667 87353891 -54917553 - MIR SINE MIR 0 262 12 182 327 0 0 chr9 87354025 87354077 -54917367 - MIR SINE MIR -60 148 97 21 36 0 0 chr9 87354964 87354992 -54916452 + AT_rich Low_complexity Low_complexity 1 28 0 742 247 51 78 chr9 87355062 87355317 -54916127 + MIR SINE MIR 2 249 -13 2416 97 3 0 chr9 87355568 87355878 -54915566 + AluSp SINE Alu 1 311 -2 630 258 199 44 chr9 87355984 87356382 -54915062 + L2 LINE L2 2688 3240 -73 2157 106 7 13 chr9 87356382 87356685 -54914759 - AluSx SINE Alu -11 301 1 630 258 199 44 chr9 87356685 87356772 -54914672 + L2 LINE L2 3240 3312 -1 426 275 100 4 chr9 87356821 87357061 -54914383 - L1M4 LINE L1 -893 5253 4991 * 452 236 31 25 chr9 87357033 87357194 -54914250 - L1ME LINE L1 -3033 3047 2886 1051 164 16 32 chr9 87357194 87357383 -54914061 - AluJo SINE Alu -6 306 121 242 217 0 0 chr9 87357383 87357443 -54914001 - L1ME LINE L1 -3200 2880 2821 567 141 30 20 chr9 87357493 87357592 -54913852 + FLAM_C SINE Alu 37 136 -7 1085 234 113 16 chr9 87357592 87358088 -54913356 - L1ME LINE L1 -3412 2668 2125 * 3830 107 27 11 chr9 87358087 87359034 -54912410 + L1PA14 LINE L1 5138 6161 0 271 252 37 0 chr9 87359041 87359148 -54912296 - L1ME LINE L1 -3949 2131 2021 737 292 51 38 chr9 87359158 87359606 -54911838 - L1ME LINE L1 -5208 862 409 * 3176 211 79 24 chr9 87359593 87360999 -54910445 - L1MCb LINE L1 -4851 1194 1 523 304 10 6 chr9 87361187 87361398 -54910046 - L1ME LINE L1 -5855 215 6 347 239 77 43 chr9 87361494 87361611 -54909833 - MIR SINE MIR -135 127 7 21 0 0 0 chr9 87361651 87361672 -54909772 + AT_rich Low_complexity Low_complexity 1 21 0 246 287 129 0 chr9 87361862 87361963 -54909481 + L2 LINE L2 3199 3312 -1 521 215 230 11 chr9 87363465 87363656 -54907788 - MER46C DNA MER2_type -8 330 98 820 104 0 0 chr9 87364534 87364640 -54906804 - AluSg/x SINE Alu -11 298 193 219 333 32 11 chr9 87364824 87364917 -54906527 - MER5A DNA MER1_type -7 182 88 197 292 258 0 chr9 87364859 87364948 -54906496 + MER5A DNA MER1_type 53 164 -25 * 1988 113 28 3 chr9 87365568 87365852 -54905592 + AluY SINE Alu 1 291 -20 736 334 75 40 chr9 87367683 87368337 -54903107 + L2 LINE L2 2591 3272 0 528 171 86 17 chr9 87368497 87368614 -54902830 - FLAM_A SINE Alu -8 125 1 970 179 30 0 chr9 87368727 87368895 -54902549 - FAM SINE Alu -2 173 1 27 29 0 0 chr9 87369489 87369523 -54901921 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr9 87369810 87369832 -54901612 + AT_rich Low_complexity Low_complexity 1 22 0 252 259 71 24 chr9 87370479 87370564 -54900880 - MER5B DNA MER1_type -1 177 89 188 282 0 0 chr9 87370544 87370583 -54900861 - MER5B DNA MER1_type -133 45 7 * 956 193 12 6 chr9 87372202 87372373 -54899071 - FAM SINE Alu -3 172 1 28 29 0 0 chr9 87373982 87374017 -54897427 + AT_rich Low_complexity Low_complexity 1 35 0 442 264 143 0 chr9 87374610 87374750 -54896694 - MIR SINE MIR -25 237 78 1735 178 7 7 chr9 87374794 87375097 -54896347 + AluJo SINE Alu 1 303 -9 2527 84 0 0 chr9 87375321 87375629 -54895815 + AluSq SINE Alu 1 308 -5 2077 141 0 3 chr9 87376374 87376680 -54894764 + AluSg SINE Alu 1 305 -5 223 288 25 93 chr9 87376880 87376998 -54894446 + MIR SINE MIR 38 147 -115 1958 140 7 7 chr9 87377175 87377475 -54893969 + AluSx SINE Alu 1 300 -12 2259 117 0 0 chr9 87377478 87377776 -54893668 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 87379668 87379689 -54891755 + AT_rich Low_complexity Low_complexity 1 21 0 211 205 24 48 chr9 87380870 87380953 -54890491 + (CCCCG)n Simple_repeat Simple_repeat 4 84 0 201 246 116 0 chr9 87381775 87381844 -54889600 - MIR SINE MIR 0 262 186 798 146 15 8 chr9 87381845 87381975 -54889469 - FLAM_C SINE Alu -11 132 2 243 213 93 0 chr9 87381976 87382051 -54889393 - MIR SINE MIR -66 196 115 620 133 0 0 chr9 87382413 87382503 -54888941 - AluSg/x SINE Alu -14 296 207 2204 119 0 0 chr9 87382553 87382847 -54888597 - AluSx SINE Alu -18 294 1 874 168 0 40 chr9 87382864 87383037 -54888407 + FRAM SINE Alu 1 166 -10 576 291 251 3 chr9 87383896 87384191 -54887253 + L2 LINE L2 2493 2860 -454 2223 196 174 58 chr9 87384193 87384853 -54886591 + MER21B LTR ERV1 2 738 -125 656 182 70 83 chr9 87384862 87385076 -54886368 - LTR48 LTR ERV1 0 787 389 * 1237 221 126 55 chr9 87385067 87385210 -54886234 - LTR48 LTR ERV1 -302 485 354 2029 144 0 7 chr9 87385210 87385508 -54885936 + AluJb SINE Alu 1 296 -16 1237 221 126 55 chr9 87385508 87385817 -54885627 - LTR48 LTR ERV1 -433 354 1 289 195 171 61 chr9 87385817 87385899 -54885545 + MER21A LTR ERV1 814 904 -27 465 336 114 0 chr9 87385899 87386110 -54885334 + L2 LINE L2 2825 3059 -254 2165 105 0 7 chr9 87386111 87386449 -54884995 - AluSx SINE Alu 0 336 1 2619 97 93 7 chr9 87386504 87386925 -54884519 + LTR24C LTR ERV1 1 457 -178 694 165 10 0 chr9 87386945 87387048 -54884396 + AluJo SINE Alu 2 105 -207 1676 170 169 16 chr9 87387061 87387495 -54883949 - LTR10A LTR ERV1 -61 548 1 1633 260 12 21 chr9 87387498 87387929 -54883515 - LTR10A-int LTR ERV1 -4 6645 6219 17891 109 32 58 chr9 87387951 87391892 -54879552 - HERVI LTR ERV1 -2739 4405 1562 4565 215 4 6 chr9 87391880 87392722 -54878722 - HERVI LTR ERV1 -4769 3016 2177 * 3482 210 26 42 chr9 87392709 87393529 -54877915 - HERVI LTR ERV1 -6498 1287 481 * 945 191 90 50 chr9 87393566 87393844 -54877600 - HERVI LTR ERV1 -6360 289 1 1750 171 170 16 chr9 87393853 87394286 -54877158 - LTR10A LTR ERV1 -61 548 2 912 186 23 63 chr9 87394286 87394507 -54876937 + AluJo SINE Alu 101 312 0 1803 161 13 10 chr9 87394542 87394846 -54876598 + AluJb SINE Alu 1 305 -7 556 69 11 11 chr9 87394851 87394938 -54876506 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 1928 164 3 6 chr9 87394956 87395268 -54876176 - AluSq SINE Alu 0 313 3 3796 151 25 3 chr9 87395301 87395889 -54875555 - LTR26 LTR ERV1 0 603 3 786 164 2 12 chr9 87395889 87396036 -54875408 + LTR24C LTR ERV1 428 635 0 295 223 48 39 chr9 87396084 87396187 -54875257 + L2 LINE L2 3149 3252 -61 11641 165 18 39 chr9 87396191 87396388 -54875056 - L1M2 LINE L1 -493 6506 6306 2168 123 0 0 chr9 87396388 87396680 -54874764 - AluSq SINE Alu -17 296 5 11641 165 18 39 chr9 87396680 87396779 -54874665 - L1M2 LINE L1 -693 6306 6206 1055 105 0 0 chr9 87396779 87396912 -54874532 + FLAM_C SINE Alu 1 133 0 11641 165 18 39 chr9 87396912 87397947 -54873497 - L1M2 LINE L1 -793 6206 5151 1634 189 3 23 chr9 87397947 87398253 -54873191 - AluJb SINE Alu -12 300 1 11641 165 18 39 chr9 87398253 87398675 -54872769 - L1M2 LINE L1 -1848 5151 4722 2102 122 10 3 chr9 87398675 87398971 -54872473 - AluSx SINE Alu -14 298 1 11641 165 18 39 chr9 87398971 87399497 -54871947 - L1M2 LINE L1 -2277 4722 4293 2069 138 7 0 chr9 87399497 87399787 -54871657 + AluSx SINE Alu 1 292 -20 11641 165 18 39 chr9 87399787 87400403 -54871041 - L1M2 LINE L1 -2706 4293 3665 2199 119 0 25 chr9 87400409 87400727 -54870717 - AluSg SINE Alu 0 310 1 266 26 53 0 chr9 87400744 87400782 -54870662 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 878 225 0 5 chr9 87402072 87402263 -54869181 - L1M2 LINE L1 -3183 3665 3476 258 87 43 22 chr9 87402263 87402303 -54869141 - AluSx SINE Alu -5 297 257 3089 127 37 4 chr9 87402303 87402791 -54868653 + MER9 LTR ERVK 1 504 -7 1928 119 4 4 chr9 87402791 87403059 -54868385 - AluSx SINE Alu -44 268 1 1921 153 0 10 chr9 87403068 87403369 -54868075 - AluSx SINE Alu -14 298 1 1630 237 23 21 chr9 87403373 87403807 -54867637 - L1M2 LINE L1 -3363 3485 3051 * 45002 42 1 3 chr9 87403783 87409951 -54861493 - L1PA4 LINE L1 0 6857 704 6214 208 25 12 chr9 87409952 87411623 -54859821 - L1M2 LINE L1 -3755 3093 1402 4327 197 13 18 chr9 87411614 87412471 -54858973 - L1M2 LINE L1 -5924 925 73 * 316 219 97 117 chr9 87412497 87412542 -54858902 - MLT1L LTR MaLR -415 200 156 1108 159 77 24 chr9 87412542 87412750 -54858694 - MER20 DNA MER1_type 0 219 1 316 219 97 117 chr9 87412750 87412900 -54858544 - MLT1L LTR MaLR -459 156 9 2204 142 0 0 chr9 87415073 87415384 -54856060 + AluSx SINE Alu 1 311 -1 347 274 28 9 chr9 87415583 87415689 -54855755 + MIR SINE MIR 32 139 -69 487 212 110 38 chr9 87415831 87416067 -54855377 - MER113 DNA MER1_type? -267 254 2 205 341 22 30 chr9 87416074 87416209 -54855235 - L2 LINE L2 -1148 2166 2033 37671 95 9 11 chr9 87416298 87422454 -54848990 + L1PA6 LINE L1 11 6152 -2 23 0 0 0 chr9 87422454 87422477 -54848967 + AT_rich Low_complexity Low_complexity 1 23 0 477 204 0 11 chr9 87422979 87423072 -54848372 - MER53 DNA DNA -73 116 25 2884 244 101 73 chr9 87423231 87423607 -54847837 - L1MC4 LINE L1 -1 8041 7677 695 203 0 0 chr9 87423607 87423725 -54847719 - FLAM_A SINE Alu -12 121 4 2884 244 101 73 chr9 87423725 87424240 -54847204 - L1MC4 LINE L1 -365 7677 7178 2259 129 3 0 chr9 87424240 87424551 -54846893 - AluSx SINE Alu 0 312 1 2884 244 101 73 chr9 87424551 87424564 -54846880 - L1MC4 LINE L1 -864 7178 7167 1964 155 10 0 chr9 87424564 87424867 -54846577 - AluSx SINE Alu -6 306 1 2884 244 101 73 chr9 87424867 87425870 -54845574 - L1MC4 LINE L1 -875 7167 6194 2236 86 27 0 chr9 87425870 87426171 -54845273 - AluSc SINE Alu 0 309 1 2884 244 101 73 chr9 87426171 87426658 -54844786 - L1MC4 LINE L1 -1848 6194 5722 2167 84 0 11 chr9 87426658 87426970 -54844474 - AluY SINE Alu 0 309 1 2884 244 101 73 chr9 87426970 87427029 -54844415 - L1MC4 LINE L1 -2320 5722 5666 1875 137 47 7 chr9 87427029 87427329 -54844115 - AluSx SINE Alu 0 312 1 2884 244 101 73 chr9 87427329 87427400 -54844044 - L1MC4 LINE L1 -2376 5666 5301 1899 146 10 0 chr9 87427690 87427984 -54843460 - AluJb SINE Alu -15 297 1 436 291 14 40 chr9 87428022 87428128 -54843316 - MIR SINE MIR -107 155 52 2101 99 14 14 chr9 87428128 87428410 -54843034 + AluSq SINE Alu 1 314 0 223 62 0 0 chr9 87428410 87428442 -54843002 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 436 291 14 40 chr9 87428442 87428482 -54842962 - MIR SINE MIR -210 52 12 1599 158 37 30 chr9 87428640 87428938 -54842506 - AluJb SINE Alu -12 300 1 312 298 74 87 chr9 87429111 87429625 -54841819 + L2 LINE L2 2740 3270 -2 1342 144 5 0 chr9 87429751 87429959 -54841485 - MER6B DNA MER2_type 0 210 2 1773 163 67 12 chr9 87430422 87430766 -54840678 + MLT1A1 LTR MaLR 1 363 -2 423 365 55 8 chr9 87431394 87431632 -54839812 - MIR SINE MIR -8 254 6 1870 144 77 29 chr9 87434032 87434232 -54837212 - L1MB3 LINE L1 -5 6178 5989 1642 205 7 3 chr9 87434232 87434529 -54836915 - AluJb SINE Alu -12 300 3 1870 144 77 29 chr9 87434529 87434704 -54836740 - L1MB3 LINE L1 -194 5989 5785 842 172 0 0 chr9 87435464 87435592 -54835852 - FLAM_A SINE Alu -5 128 1 2240 120 0 0 chr9 87435983 87436292 -54835152 - AluSx SINE Alu -3 309 1 2391 75 0 0 chr9 87436350 87436645 -54834799 - AluY SINE Alu -16 295 1 311 327 53 0 chr9 87436701 87436814 -54834630 - MIR3 SINE MIR -37 171 53 7513 123 30 42 chr9 87438071 87438409 -54833035 + HSMAR2 DNA Mariner 4 344 -958 1741 180 13 7 chr9 87438409 87438709 -54832735 + AluJo SINE Alu 1 302 -10 7513 123 30 42 chr9 87438709 87439640 -54831804 + HSMAR2 DNA Mariner 344 1284 -18 1519 111 0 0 chr9 87439640 87439887 -54831557 - AluSg/x SINE Alu 0 328 82 7513 123 30 42 chr9 87439887 87439902 -54831542 + HSMAR2 DNA Mariner 1284 1278 -24 2269 119 0 0 chr9 87439902 87440205 -54831239 - AluSx SINE Alu -9 303 1 7513 123 30 42 chr9 87440205 87440229 -54831215 + HSMAR2 DNA Mariner 1277 1300 -2 383 275 0 132 chr9 87440284 87440451 -54830993 - L2 LINE L2 -1 3312 3168 195 100 0 0 chr9 87440984 87441014 -54830430 + (TC)n Simple_repeat Simple_repeat 2 31 0 2213 111 0 3 chr9 87441118 87441415 -54830029 - AluSq SINE Alu -17 296 1 314 278 24 1 chr9 87441652 87441780 -54829664 + L1MC4 LINE L1 7838 8042 0 890 272 144 25 chr9 87441967 87442412 -54829032 - L2 LINE L2 -6 3307 2810 2972 160 48 10 chr9 87442495 87443084 -54828360 + L1MB4 LINE L1 5569 6179 -1 451 270 115 19 chr9 87443324 87443646 -54827798 + L1ME4a LINE L1 5710 6062 -59 276 264 0 0 chr9 87443698 87443785 -54827659 - L1MC4 LINE L1 -21 8021 7935 435 122 33 0 chr9 87443829 87443919 -54827525 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 525 248 36 27 chr9 87443922 87444132 -54827312 + MER58 DNA MER1_type 2 2420 0 329 213 47 53 chr9 87444169 87444319 -54827125 - L1MC4 LINE L1 -145 7897 7749 668 138 81 16 chr9 87445474 87445597 -54825847 + FLAM_C SINE Alu 1 131 -2 2701 210 64 0 chr9 87446132 87446726 -54824718 + MER82 DNA MER2_type 22 653 0 285 276 52 52 chr9 87446726 87446842 -54824602 - L2 LINE L2 -36 3236 3121 280 247 21 43 chr9 87447154 87447247 -54824197 - L2 LINE L2 -208 3064 2974 191 341 12 24 chr9 87447264 87447349 -54824095 + L2 LINE L2 3220 3303 -10 2213 109 0 26 chr9 87447486 87447790 -54823654 - AluSx SINE Alu -16 296 1 884 60 0 0 chr9 87447895 87448011 -54823433 - MSTB LTR MaLR 0 432 317 * 939 200 26 0 chr9 87448002 87448197 -54823247 - MSTB LTR MaLR -226 200 1 198 0 0 0 chr9 87448245 87448267 -54823177 + (TG)n Simple_repeat Simple_repeat 1 22 0 1385 243 85 69 chr9 87448386 87449070 -54822374 + L1MC4 LINE L1 7334 8028 -14 1714 133 21 97 chr9 87449070 87449265 -54822179 - AluYb8 SINE Alu -5 313 153 1430 101 0 0 chr9 87449265 87449453 -54821991 - U2 snRNA snRNA 0 188 1 1714 133 21 97 chr9 87449453 87449596 -54821848 - AluYb8 SINE Alu -165 153 1 2378 68 0 7 chr9 87449864 87450156 -54821288 - AluSc SINE Alu -18 291 2 228 266 33 7 chr9 87450335 87450433 -54821011 + GA-rich Low_complexity Low_complexity 2 158 0 1951 88 0 8 chr9 87451479 87451730 -54819714 + AluSc SINE Alu 58 306 -3 472 289 29 29 chr9 87451986 87452159 -54819285 - MIR SINE MIR -16 246 74 320 309 12 0 chr9 87452189 87452270 -54819174 - MIR SINE MIR -168 94 13 1888 134 28 7 chr9 87452310 87452594 -54818850 + AluJo SINE Alu 1 290 -22 1159 160 68 5 chr9 87452938 87453144 -54818300 - AluJb SINE Alu -7 305 87 6648 182 49 94 chr9 87453161 87454052 -54817392 - L1MB7 LINE L1 -5 6415 5485 2295 95 0 16 chr9 87454052 87454357 -54817087 - AluSg1 SINE Alu -9 300 1 6648 182 49 94 chr9 87454357 87454984 -54816460 - L1MB7 LINE L1 -935 5485 4831 1376 213 14 40 chr9 87454984 87455280 -54816164 - AluJo SINE Alu -24 288 1 6648 182 49 94 chr9 87455280 87457487 -54813957 - L1MB7 LINE L1 -1589 4831 2853 1565 202 22 19 chr9 87457489 87457850 -54813594 - MLT1A1 LTR MaLR -3 362 1 1155 193 66 107 chr9 87457874 87458205 -54813239 - L1MB7 LINE L1 -3580 2802 2459 2029 143 3 0 chr9 87458205 87458506 -54812938 + AluSx SINE Alu 5 306 -6 1155 193 66 107 chr9 87458506 87458875 -54812569 - L1MB7 LINE L1 -3923 2459 2098 395 204 0 45 chr9 87459312 87459400 -54812044 + L2 LINE L2 3230 3313 0 2163 96 3 10 chr9 87459555 87459856 -54811588 - AluSx SINE Alu -1 311 13 279 0 0 0 chr9 87460590 87460621 -54810823 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2140 91 13 23 chr9 87461288 87461595 -54809849 - AluSg SINE Alu -5 305 2 2565 137 71 60 chr9 87462869 87463418 -54808026 + LTR10A LTR ERV1 1 555 -54 2173 108 3 40 chr9 87463518 87463842 -54807602 - AluSx SINE Alu 0 312 1 232 268 8 32 chr9 87463950 87464073 -54807371 - L1MCa LINE L1 -4882 1544 1425 252 215 54 32 chr9 87464084 87464177 -54807267 - L1MCa LINE L1 -4870 1546 1452 886 124 102 0 chr9 87464182 87464359 -54807085 - L1MA8 LINE L1 -3 6288 6094 585 121 0 10 chr9 87464362 87464461 -54806983 + MER4A LTR ERV1 1 98 -566 1647 131 3 84 chr9 87464461 87464836 -54806608 + MER4A LTR ERV1 261 663 -1 1819 152 131 36 chr9 87465396 87465577 -54805867 + MSTB LTR MaLR 1 163 -263 2419 81 0 3 chr9 87465577 87465874 -54805570 + AluY SINE Alu 1 296 -15 1819 152 131 36 chr9 87465874 87466081 -54805363 + MSTB LTR MaLR 163 426 0 461 277 118 0 chr9 87467266 87467385 -54804059 + L2 LINE L2 3180 3312 -1 364 280 46 40 chr9 87467486 87467661 -54803783 - L1MEc LINE L1 -3655 2885 2710 263 269 26 13 chr9 87467675 87467711 -54803733 + CT-rich Low_complexity Low_complexity 4 38 -44 1942 144 43 0 chr9 87467711 87468010 -54803434 - AluSx SINE Alu 0 312 1 263 269 26 13 chr9 87468010 87468051 -54803393 + CT-rich Low_complexity Low_complexity 38 82 0 340 323 69 67 chr9 87468081 87468456 -54802988 - L1MEc LINE L1 -3997 2724 2349 451 332 102 37 chr9 87468612 87468651 -54802793 - L1MEc LINE L1 -832 2069 2034 429 139 13 0 chr9 87468651 87468730 -54802714 - MER116 DNA Mariner 0 80 1 451 332 102 37 chr9 87468730 87469073 -54802371 - L1MEc LINE L1 -867 2034 1620 25 31 0 0 chr9 87469135 87469167 -54802277 + AT_rich Low_complexity Low_complexity 1 32 0 652 210 0 70 chr9 87469265 87469435 -54802009 - AluJb SINE Alu 0 451 301 1343 48 0 10 chr9 87469435 87469644 -54801800 + (TTTC)n Simple_repeat Simple_repeat 1 207 0 652 210 0 70 chr9 87469644 87469796 -54801648 - AluJb SINE Alu -150 301 140 2195 145 0 0 chr9 87469908 87470218 -54801226 + AluSq SINE Alu 1 310 -3 287 191 24 12 chr9 87471048 87471132 -54800312 + (TA)n Simple_repeat Simple_repeat 1 85 0 189 0 0 0 chr9 87471369 87471390 -54800054 + (CA)n Simple_repeat Simple_repeat 1 21 0 1589 184 0 39 chr9 87471511 87471820 -54799624 - AluJb SINE Alu -15 297 1 189 260 68 14 chr9 87471889 87471962 -54799482 - L2 LINE L2 -1604 1710 1634 2284 93 3 13 chr9 87473847 87474158 -54797286 + AluSx SINE Alu 1 308 -4 245 29 29 0 chr9 87474542 87474576 -54796868 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2226 101 0 0 chr9 87474578 87474866 -54796578 - AluSx SINE Alu -24 288 1 782 174 0 8 chr9 87475448 87475611 -54795833 - FLAM_C SINE Alu 0 143 3 355 296 107 18 chr9 87475705 87475874 -54795570 + L1M3d LINE L1 1604 1787 -5699 3305 220 44 38 chr9 87475931 87477301 -54794143 + L1M3d LINE L1 3040 4426 -3139 783 239 92 79 chr9 87477474 87477843 -54793601 + MLT1A2 LTR MaLR 1 374 0 1184 186 35 118 chr9 87477910 87478308 -54793136 - MLT1A1 LTR MaLR 0 365 1 2172 124 12 104 chr9 87479325 87479727 -54791717 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr9 87480062 87480090 -54791354 + AT_rich Low_complexity Low_complexity 1 28 0 1556 173 0 66 chr9 87480351 87480669 -54790775 - AluJo SINE Alu -15 297 1 21 36 0 0 chr9 87480703 87480731 -54790713 + AT_rich Low_complexity Low_complexity 1 28 0 2242 95 7 0 chr9 87482188 87482483 -54788961 - AluSp SINE Alu -16 297 1 21 57 0 0 chr9 87483539 87483574 -54787870 + AT_rich Low_complexity Low_complexity 1 35 0 343 243 148 59 chr9 87484652 87484854 -54786590 + MIR SINE MIR 6 225 -37 3215 115 2 5 chr9 87486427 87486862 -54784582 + MER57B LTR ERV1 1 434 0 394 276 55 48 chr9 87487634 87487820 -54783624 + MIR SINE MIR 16 205 -57 1766 162 0 36 chr9 87487846 87488148 -54783296 - AluJo SINE Alu -21 291 1 917 80 0 0 chr9 87488988 87489101 -54782343 + AluSq/x SINE Alu 1 113 -199 1252 42 17 27 chr9 87489159 87489449 -54781995 + (TTTC)n Simple_repeat Simple_repeat 1 464 0 2181 138 0 0 chr9 87489451 87489762 -54781682 - AluSq SINE Alu -2 311 1 11255 172 45 24 chr9 87490259 87492185 -54779259 - L1M1 LINE L1 -5369 2196 219 2063 131 10 13 chr9 87492185 87492498 -54778946 - AluSx SINE Alu 0 312 1 11255 172 45 24 chr9 87492498 87492707 -54778737 - L1M1 LINE L1 -7346 219 16 222 195 0 0 chr9 87493381 87493422 -54778022 - L2 LINE L2 -4 3309 3269 24 32 0 0 chr9 87493490 87493521 -54777923 + AT_rich Low_complexity Low_complexity 1 31 0 2189 131 0 0 chr9 87493766 87494072 -54777372 - AluSq SINE Alu -7 306 1 2343 202 52 19 chr9 87494092 87494611 -54776833 + LTR31 LTR ERV1 69 604 -15 2289 114 0 0 chr9 87494750 87495057 -54776387 - AluSq SINE Alu -5 308 2 2106 126 3 3 chr9 87495255 87495564 -54775880 + AluSx SINE Alu 1 309 -3 4671 135 15 32 chr9 87495818 87496545 -54774899 - LTR62 LTR ERVK -4 715 1 2422 94 0 0 chr9 87497261 87497570 -54773874 - AluSg SINE Alu -1 309 1 567 151 0 0 chr9 87498239 87498332 -54773112 - MER53 DNA DNA 0 189 97 1293 224 59 31 chr9 87498332 87498665 -54772779 + L1ME3A LINE L1 5762 6109 -61 2291 105 0 10 chr9 87498665 87498970 -54772474 - AluSx SINE Alu -10 302 1 1293 224 59 31 chr9 87498970 87499025 -54772419 + L1ME3A LINE L1 6109 6161 -9 195 186 0 0 chr9 87499085 87499128 -54772316 + (TA)n Simple_repeat Simple_repeat 2 44 0 5371 140 48 12 chr9 87499973 87501060 -54770384 + L1MA6 LINE L1 5114 6279 -33 7761 47 21 0 chr9 87501060 87502001 -54769443 - L1PA5 LINE L1 0 6154 5210 831 32 0 0 chr9 87502001 87502095 -54769349 + L1PA4 LINE L1 6058 6152 -3 37769 72 39 6 chr9 87502141 87503119 -54768325 - L1PA5 LINE L1 -917 5229 4284 2208 80 0 21 chr9 87503119 87503407 -54768037 - AluY SINE Alu -29 282 1 37769 72 39 6 chr9 87503407 87507484 -54763960 - L1PA5 LINE L1 -1862 4284 11 358 82 0 0 chr9 87507494 87507543 -54763901 + L1MA9 LINE L1 6264 6312 0 714 316 96 3 chr9 87507551 87507874 -54763570 - MARNA DNA Mariner -102 484 132 524 256 55 18 chr9 87508273 87508437 -54763007 + MIR SINE MIR 54 223 -39 1964 151 20 3 chr9 87509069 87509374 -54762070 + AluSx SINE Alu 3 312 0 339 181 277 0 chr9 87509797 87509891 -54761553 + MIR SINE MIR 73 192 -70 212 152 0 0 chr9 87510344 87510377 -54761067 + MIR SINE MIR 209 241 -21 1931 114 54 7 chr9 87511146 87511444 -54760000 - AluSx SINE Alu 0 312 1 961 279 92 5 chr9 87511606 87511975 -54759469 - MLT1I LTR MaLR -8 401 1 1717 179 7 7 chr9 87512782 87513083 -54758361 + AluJb SINE Alu 1 301 -11 835 159 17 2 chr9 87514274 87514509 -54756935 + MSTC LTR MaLR 1 287 -141 1823 213 86 99 chr9 87514523 87515428 -54756016 + LTR1B LTR ERV1 10 1020 0 852 179 14 0 chr9 87515428 87515570 -54755874 + MSTC LTR MaLR 284 427 -1 211 250 250 0 chr9 87515622 87515706 -54755738 + L3b LINE CR1 1294 1398 -185 34 0 0 0 chr9 87516262 87516296 -54755148 + AT_rich Low_complexity Low_complexity 1 34 0 2170 127 7 0 chr9 87516306 87516614 -54754830 - AluSx SINE Alu -2 310 1 206 250 0 54 chr9 87516668 87516724 -54754720 - MIR SINE MIR -94 168 116 412 267 84 63 chr9 87516815 87517006 -54754438 - MER91A DNA MER1_type 0 196 2 281 204 0 0 chr9 87517088 87517137 -54754307 + L2 LINE L2 3224 3272 0 1971 153 55 6 chr9 87518967 87519313 -54752131 + MSTA LTR MaLR 66 428 0 2580 48 0 22 chr9 87519687 87520000 -54751444 - AluY SINE Alu -1 310 5 248 264 0 56 chr9 87520529 87520601 -54750843 + L2 LINE L2 3203 3270 -2 711 266 75 14 chr9 87520687 87520901 -54750543 - MIR SINE MIR -34 228 2 10672 178 65 75 chr9 87521557 87521895 -54749549 - L1MCa LINE L1 -1289 5137 4797 750 211 0 0 chr9 87521895 87522023 -54749421 - FLAM_A SINE Alu -2 131 4 10672 178 65 75 chr9 87522023 87523162 -54748282 - L1MCa LINE L1 -1629 4797 3649 1850 164 0 0 chr9 87523162 87523443 -54748001 + AluSx SINE Alu 19 299 -13 10672 178 65 75 chr9 87523443 87524147 -54747297 - L1MCa LINE L1 -2777 3649 2940 1906 128 64 7 chr9 87524147 87524429 -54747015 + AluSx SINE Alu 1 298 -14 10672 178 65 75 chr9 87524429 87525274 -54746170 - L1MCa LINE L1 -3486 2940 2089 2080 128 0 20 chr9 87525274 87525572 -54745872 - AluSg SINE Alu -18 292 1 10672 178 65 75 chr9 87525572 87526507 -54744937 - L1MCa LINE L1 -4337 2089 1147 1561 210 3 10 chr9 87526507 87526802 -54744642 - AluJo SINE Alu -15 297 5 10672 178 65 75 chr9 87526802 87527913 -54743531 - L1MCa LINE L1 -5279 1147 27 192 97 0 0 chr9 87527913 87527944 -54743500 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1643 166 19 4 chr9 87527948 87528219 -54743225 - AluSx SINE Alu -37 275 1 10672 178 65 75 chr9 87528219 87528306 -54743138 - L1MCa LINE L1 -6402 24 19 313 301 0 0 chr9 87528339 87528422 -54743022 + L2 LINE L2 3231 3313 0 4285 179 48 14 chr9 87528607 87529518 -54741926 - L1MB8 LINE L1 -6 6172 5238 255 355 60 17 chr9 87530740 87530950 -54740494 + MIR SINE MIR 10 230 -32 258 226 15 0 chr9 87531274 87531354 -54740090 + L1ME LINE L1 5369 5449 -735 317 306 28 28 chr9 87531430 87531574 -54739870 + L1ME LINE L1 5585 5728 -393 2453 80 0 0 chr9 87531731 87532032 -54739412 + AluY SINE Alu 1 301 -10 2082 114 0 72 chr9 87532620 87532954 -54738490 + AluSx SINE Alu 1 310 -2 1856 125 52 0 chr9 87533025 87533314 -54738130 - AluSq SINE Alu -9 304 1 202 238 0 0 chr9 87534820 87534862 -54736582 + L2 LINE L2 3266 3307 -6 466 289 110 45 chr9 87534891 87535265 -54736179 - MLT1I LTR MaLR -4 405 8 335 298 18 0 chr9 87535396 87535510 -54735934 - MER103 DNA DNA -2 164 49 203 269 11 86 chr9 87535541 87535634 -54735810 - L2 LINE L2 0 3272 3187 2501 81 0 0 chr9 87535936 87536243 -54735201 + AluSx SINE Alu 1 307 -5 256 255 0 0 chr9 87536694 87536745 -54734699 - L1MC/D LINE L1 -2021 5787 5737 1553 133 18 43 chr9 87536873 87537151 -54734293 + L1MA5A LINE L1 6022 6292 -5 2313 113 0 0 chr9 87537199 87537510 -54733934 + AluSq SINE Alu 3 313 0 271 264 33 22 chr9 87538055 87538146 -54733298 - MIR SINE MIR -82 180 89 29 0 0 0 chr9 87538924 87538953 -54732491 + AT_rich Low_complexity Low_complexity 1 29 0 2347 92 0 0 chr9 87540329 87540622 -54730822 - AluSg SINE Alu -15 295 3 275 214 0 18 chr9 87542036 87542092 -54729352 - L2 LINE L2 -15 3298 3244 401 234 21 28 chr9 87542534 87542675 -54728769 - L1MA9 LINE L1 -175 6137 5998 1205 242 84 49 chr9 87542682 87543253 -54728191 + LTR28 LTR ERV1 430 1020 0 2575 215 9 0 chr9 87543255 87544010 -54727434 - L1MA9 LINE L1 -702 5610 4850 47 44 0 0 chr9 87544226 87544294 -54727150 + AT_rich Low_complexity Low_complexity 1 68 0 1170 81 7 0 chr9 87544433 87544604 -54726840 + L1PA10 LINE L1 5999 6170 0 17232 90 76 69 chr9 87544612 87544976 -54726468 + MER57B-int LTR ERV1 4664 5024 -2513 2274 99 3 0 chr9 87544976 87545268 -54726176 - AluSx SINE Alu -15 297 5 17232 90 76 69 chr9 87545268 87546036 -54725408 + MER57B-int LTR ERV1 5024 5785 -1752 2425 76 7 0 chr9 87546036 87546339 -54725105 - AluY SINE Alu -6 305 1 17232 90 76 69 chr9 87546339 87547031 -54724413 + MER57B-int LTR ERV1 5785 6471 -1066 1549 75 10 5 chr9 87547031 87547231 -54724213 - AluSg/x SINE Alu -15 294 94 17232 90 76 69 chr9 87547231 87548259 -54723185 + MER57B-int LTR ERV1 6471 7537 0 2718 123 20 17 chr9 87548259 87548667 -54722777 + MER57B LTR ERV1 1 409 -25 344 269 84 94 chr9 87549102 87549154 -54722290 - L1MC4a LINE L1 -1924 5884 5833 2252 114 3 0 chr9 87549154 87549461 -54721983 - AluSq SINE Alu -5 308 1 344 269 84 94 chr9 87549461 87549791 -54721653 - L1MC4a LINE L1 -1975 5833 5506 405 0 0 0 chr9 87550040 87550085 -54721359 + (CA)n Simple_repeat Simple_repeat 2 46 0 430 108 24 0 chr9 87550132 87550215 -54721229 + (TA)n Simple_repeat Simple_repeat 1 85 0 2194 103 3 0 chr9 87550262 87550552 -54720892 - AluSq SINE Alu -18 295 5 331 299 79 18 chr9 87551083 87551247 -54720197 - MIR SINE MIR -42 220 47 1908 124 57 3 chr9 87551393 87551676 -54719768 + AluSx SINE Alu 1 298 -14 777 257 122 17 chr9 87553091 87553445 -54717999 + LTR16C LTR ERVL 99 489 -2 901 213 0 0 chr9 87553959 87554119 -54717325 + AluJb SINE Alu 140 299 -13 684 268 35 31 chr9 87554627 87554855 -54716589 + MIR SINE MIR 32 260 -2 2220 96 3 22 chr9 87555258 87555571 -54715873 + AluSp SINE Alu 1 307 -6 411 21 0 0 chr9 87556250 87556298 -54715146 + (CAA)n Simple_repeat Simple_repeat 1 48 0 566 230 39 56 chr9 87556700 87556878 -54714566 - MLT1K LTR MaLR -15 573 399 477 269 81 16 chr9 87557180 87557366 -54714078 - MER112 DNA MER1_type -20 240 43 294 322 6 44 chr9 87557368 87557551 -54713893 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 * 296 345 0 0 chr9 87557440 87557556 -54713888 + (TA)n Simple_repeat Simple_repeat 1 116 0 607 206 0 20 chr9 87557559 87557705 -54713739 + Charlie5 DNA MER1_type 2482 2624 0 189 0 0 0 chr9 87557993 87558014 -54713430 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 471 221 26 91 chr9 87558796 87558950 -54712494 + MIR SINE MIR 63 206 -56 308 295 11 11 chr9 87559234 87559329 -54712115 - L2 LINE L2 -560 2754 2660 659 266 40 31 chr9 87559366 87559592 -54711852 + MIR SINE MIR 12 239 -23 193 313 15 15 chr9 87559614 87559681 -54711763 - L2 LINE L2 -668 2646 2580 939 241 43 5 chr9 87559743 87559950 -54711494 + MER58C DNA MER1_type 1 215 0 2227 105 0 3 chr9 87560011 87560307 -54711137 - AluSx SINE Alu -17 295 1 2064 132 0 13 chr9 87560448 87560751 -54710693 - AluSx SINE Alu -9 303 5 678 55 18 28 chr9 87561414 87561523 -54709921 + (TTCCC)n Simple_repeat Simple_repeat 1 108 0 1857 78 41 22 chr9 87561525 87561794 -54709650 - MER4-int LTR ERV1 0 6598 6325 505 174 11 38 chr9 87561803 87561987 -54709457 + CT-rich Low_complexity Low_complexity 1 179 0 200 322 246 0 chr9 87561987 87562105 -54709339 - L2 LINE L2 -1 3312 3166 345 238 0 12 chr9 87562246 87562326 -54709118 - LTR16A1 LTR ERVL -2 455 377 459 241 105 43 chr9 87562326 87562488 -54708956 + MER96 DNA MER1_type 3 174 -1 1817 200 16 16 chr9 87562634 87563009 -54708435 + L1 LINE L1 4456 4830 -1316 2130 141 0 3 chr9 87563018 87563331 -54708113 + AluSx SINE Alu 1 312 0 243 88 0 0 chr9 87563331 87563365 -54708079 + (GA)n Simple_repeat Simple_repeat 1 34 0 3495 122 34 0 chr9 87563367 87563881 -54707563 + Tigger3b DNA MER2_type 1 532 -699 2278 116 73 14 chr9 87563881 87564225 -54707219 - THE1B LTR MaLR 0 364 1 4089 138 44 3 chr9 87564226 87564362 -54707082 + Tigger3b DNA MER2_type 525 654 -2374 2302 110 0 0 chr9 87564362 87564663 -54706781 - AluSx SINE Alu -11 301 1 4089 138 44 3 chr9 87564663 87565205 -54706239 + Tigger3b DNA MER2_type 654 1231 0 2190 225 36 53 chr9 87565205 87565894 -54705550 + L1MC/D LINE L1 4829 5482 -995 2233 115 0 0 chr9 87565894 87566190 -54705254 - AluSx SINE Alu -16 296 1 2190 225 36 53 chr9 87566190 87566439 -54705005 + L1MC/D LINE L1 5482 5734 -743 1117 301 45 35 chr9 87566612 87567191 -54704253 - L2 LINE L2 -771 2543 1959 25 31 0 0 chr9 87567635 87567667 -54703777 + AT_rich Low_complexity Low_complexity 1 32 0 297 252 42 70 chr9 87568906 87569049 -54702395 - L1MC/D LINE L1 -2050 5758 5620 250 294 44 0 chr9 87569063 87569131 -54702313 - MER2 DNA MER2_type -3 342 272 278 257 14 0 chr9 87569456 87569526 -54701918 + (CA)n Simple_repeat Simple_repeat 2 72 0 2325 85 0 0 chr9 87569543 87569836 -54701608 + AluSc SINE Alu 1 293 -16 1244 153 5 19 chr9 87569846 87570055 -54701389 - MER2 DNA MER2_type -139 206 1 282 256 81 0 chr9 87570076 87570162 -54701282 - L1MC/D LINE L1 -506 5615 5523 461 282 21 28 chr9 87570413 87570555 -54700889 - L2 LINE L2 0 3313 3173 394 301 0 72 chr9 87571339 87571505 -54699939 + MER5A DNA MER1_type 35 188 -1 1988 138 0 3 chr9 87571857 87572153 -54699291 - AluSx SINE Alu -17 295 1 208 435 22 0 chr9 87572245 87572383 -54699061 + MER5A DNA MER1_type 21 161 -28 378 272 190 31 chr9 87572407 87572602 -54698842 + MIR SINE MIR 36 261 -1 346 347 17 34 chr9 87572756 87572932 -54698512 + MER5A DNA MER1_type 4 176 -13 1129 241 173 30 chr9 87574310 87574704 -54696740 - LTR16A LTR ERVL 0 450 1 2263 152 36 8 chr9 87575043 87575399 -54696045 + MER47A DNA MER2_type 1 366 0 928 127 75 17 chr9 87577047 87577201 -54694243 - MER53 DNA DNA -2 187 21 2324 122 36 0 chr9 87577201 87577536 -54693908 + MER7A DNA MER2_type 2 346 0 928 127 75 17 chr9 87577536 87577554 -54693890 - MER53 DNA DNA -168 21 5 2210 116 3 0 chr9 87577574 87577877 -54693567 - AluSx SINE Alu -8 304 1 2785 163 82 4 chr9 87577962 87578459 -54692985 - L1MC1 LINE L1 0 6333 5798 627 188 22 22 chr9 87578459 87578597 -54692847 - L1MC1 LINE L1 -883 5263 5126 246 333 26 0 chr9 87578597 87578675 -54692769 + MIR3 SINE MIR 115 194 -14 183 74 0 0 chr9 87579213 87579233 -54692211 + (CA)n Simple_repeat Simple_repeat 2 24 -4 2333 119 78 23 chr9 87579233 87579578 -54691866 - THE1B LTR MaLR 0 364 1 183 74 0 0 chr9 87579578 87579584 -54691860 + (CA)n Simple_repeat Simple_repeat 23 28 0 248 298 48 0 chr9 87579775 87579859 -54691585 - MIR SINE MIR -69 193 106 825 186 0 0 chr9 87579900 87580029 -54691415 - FLAM_A SINE Alu -4 129 1 540 186 0 0 chr9 87580411 87580524 -54690920 + CT-rich Low_complexity Low_complexity 2 114 0 1580 241 0 10 chr9 87580524 87580827 -54690617 - AluJo SINE Alu -2 300 1 5024 174 10 15 chr9 87581662 87582460 -54688984 + L1MB5 LINE L1 5069 5868 -306 2223 92 3 0 chr9 87582460 87582777 -54688667 + AluSp SINE Alu 1 318 0 5024 174 10 15 chr9 87582777 87583083 -54688361 + L1MB5 LINE L1 5868 6174 0 378 203 141 0 chr9 87585344 87585578 -54685866 + (TACGG)n Simple_repeat Simple_repeat 1 267 0 1685 157 3 32 chr9 87585675 87585987 -54685457 - AluJo SINE Alu -9 303 1 2355 102 3 3 chr9 87587756 87588069 -54683375 - AluSp SINE Alu 0 313 1 245 240 53 27 chr9 87588333 87588408 -54683036 + L2 LINE L2 3178 3254 -18 444 288 48 52 chr9 87588656 87588885 -54682559 - MIR SINE MIR -15 247 20 372 133 0 0 chr9 87590776 87590836 -54680608 + (TTCA)n Simple_repeat Simple_repeat 4 63 0 3244 181 48 16 chr9 87590927 87591379 -54680065 - L1MA7 LINE L1 0 6291 5808 2449 62 0 0 chr9 87591379 87591704 -54679740 - AluY SINE Alu 0 311 1 3244 181 48 16 chr9 87591704 87591938 -54679506 - L1MA7 LINE L1 -483 5808 5583 2294 135 13 21 chr9 87591938 87592316 -54679128 - THE1C LTR MaLR 0 375 1 3142 97 7 9 chr9 87592316 87592758 -54678686 - THE1C-int LTR MaLR 0 1580 1140 1852 114 55 0 chr9 87592748 87593021 -54678423 - THE1C-int LTR MaLR -1292 288 1 * 2319 132 13 24 chr9 87593030 87593409 -54678035 - THE1C LTR MaLR 0 375 1 1868 114 55 19 chr9 87593409 87593808 -54677636 - L1MA7 LINE L1 -704 5587 5176 293 307 50 0 chr9 87594554 87594655 -54676789 + MER103 DNA DNA 3 108 -58 969 265 112 22 chr9 87594713 87595124 -54676320 - LTR16A LTR ERVL 0 450 3 4433 116 8 49 chr9 87595294 87596025 -54675419 - MER50 LTR ERV1 -20 714 14 412 228 88 9 chr9 87596432 87596546 -54674898 - LTR33 LTR ERVL -2 519 397 216 89 0 71 chr9 87596985 87597041 -54674403 + (TTTC)n Simple_repeat Simple_repeat 4 55 0 22 35 0 0 chr9 87597088 87597117 -54674327 + AT_rich Low_complexity Low_complexity 1 29 0 1854 218 55 81 chr9 87597243 87597812 -54673632 + MLT2B3 LTR ERVL 1 554 0 870 164 27 123 chr9 87597901 87598194 -54673250 - L1MD3 LINE L1 -2 7993 7729 2282 101 3 0 chr9 87598486 87598784 -54672660 - AluSp SINE Alu -14 299 1 747 275 144 33 chr9 87598787 87598900 -54672544 - L1MEd LINE L1 -4675 1635 1536 1964 120 48 3 chr9 87598900 87599191 -54672253 + AluSx SINE Alu 1 304 -8 747 275 144 33 chr9 87599191 87599940 -54671504 - L1MEd LINE L1 -4774 1536 670 275 282 35 0 chr9 87600133 87600218 -54671226 - L1MEd LINE L1 -5750 369 282 465 174 22 22 chr9 87600345 87600437 -54671007 + LTR37B LTR ERV1 356 447 -21 241 293 160 0 chr9 87600998 87601104 -54670340 - L2 LINE L2 -223 3049 2927 702 282 80 34 chr9 87601116 87601503 -54669941 + LTR16B LTR ERVL 38 442 -22 2171 143 28 25 chr9 87601712 87602075 -54669369 - THE1B LTR MaLR 0 364 1 402 21 0 0 chr9 87603533 87603580 -54667864 + (CA)n Simple_repeat Simple_repeat 1 47 0 498 253 36 128 chr9 87605351 87605510 -54665934 + L2 LINE L2 2981 3090 -223 1737 165 14 4 chr9 87605510 87605789 -54665655 - AluJo SINE Alu -30 282 1 498 253 36 128 chr9 87605789 87605989 -54665455 + L2 LINE L2 3090 3307 -6 2165 170 112 23 chr9 87606197 87606314 -54665130 + MLT1D LTR MaLR 36 141 -364 207 0 0 0 chr9 87606314 87606337 -54665107 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2146 116 0 0 chr9 87606339 87606623 -54664821 - AluSq SINE Alu -29 284 1 2165 170 112 23 chr9 87606623 87606932 -54664512 + MLT1D LTR MaLR 141 503 -2 1878 134 10 17 chr9 87607739 87608038 -54663406 - AluSx SINE Alu -15 297 1 323 138 100 12 chr9 87608234 87608314 -54663130 + Charlie5 DNA MER1_type 39 125 -2487 * 937 175 63 28 chr9 87608312 87608564 -54662880 + Charlie5 DNA MER1_type 2234 2494 -118 5357 79 3 4 chr9 87608710 87609415 -54662029 + L1PA12 LINE L1 5465 6168 0 456 213 126 92 chr9 87609455 87609598 -54661846 - MIR SINE MIR 0 262 108 2268 96 0 0 chr9 87609598 87609890 -54661554 + AluY SINE Alu 1 292 -19 456 213 126 92 chr9 87609890 87609953 -54661491 - MIR SINE MIR -154 108 49 313 179 75 0 chr9 87610500 87610567 -54660877 + L1M4 LINE L1 3089 3160 -2986 974 174 0 21 chr9 87610896 87611086 -54660358 + MER53 DNA DNA 1 186 -3 2435 83 0 3 chr9 87611092 87611393 -54660051 - AluSg SINE Alu -10 300 1 336 200 12 0 chr9 87611494 87611574 -54659870 - MER53 DNA DNA -86 103 23 * 384 165 13 0 chr9 87611507 87611586 -54659858 + MER53 DNA DNA 110 189 0 321 100 0 0 chr9 87612111 87612161 -54659283 + (GA)n Simple_repeat Simple_repeat 1 50 0 204 244 77 39 chr9 87612623 87612701 -54658743 - L2 LINE L2 -1 3271 3191 280 297 79 0 chr9 87612913 87613014 -54658430 + L2 LINE L2 3197 3305 -8 9951 106 61 31 chr9 87613158 87614910 -54656534 - HERVH LTR ERV1 -5909 1804 1 1940 123 62 108 chr9 87614912 87615382 -54656062 - LTR7 LTR ERV1 -2 448 1 294 307 123 0 chr9 87615980 87616094 -54655350 - MIR3 SINE MIR -21 187 60 297 228 0 0 chr9 87617043 87617100 -54654344 + MER94 DNA DNA 4 60 -74 476 180 172 30 chr9 87617303 87617442 -54654002 - MLT1F LTR MaLR -122 502 243 2422 82 3 19 chr9 87617557 87617875 -54653569 - AluSq SINE Alu 0 313 1 285 210 160 25 chr9 87617875 87617985 -54653459 - L1ME4a LINE L1 -7 6114 5986 2180 121 3 0 chr9 87618127 87618416 -54653028 + AluSx SINE Alu 1 290 -22 1376 152 16 4 chr9 87618431 87618688 -54652756 - L1MA7 LINE L1 -3 6288 6029 918 200 47 123 chr9 87618990 87619495 -54651949 - MLT1F1 LTR MaLR 0 567 13 1200 106 0 0 chr9 87619559 87619778 -54651666 + (TA)n Simple_repeat Simple_repeat 1 219 0 2117 126 3 7 chr9 87619778 87620079 -54651365 - AluSx SINE Alu -12 300 1 303 241 111 77 chr9 87620438 87620645 -54650799 - L1ME4a LINE L1 -349 5829 5616 2216 114 0 0 chr9 87620671 87620960 -54650484 - AluSg SINE Alu -21 289 1 657 260 54 49 chr9 87621196 87621400 -54650044 + MLT1E LTR MaLR 36 240 -353 924 189 193 0 chr9 87621404 87621616 -54649828 + MLT1E LTR MaLR 341 593 0 2061 148 45 73 chr9 87621781 87622221 -54649223 - MSTC LTR MaLR 0 428 1 281 227 0 15 chr9 87622450 87622516 -54648928 - MLT1F LTR MaLR -387 162 98 267 271 108 39 chr9 87622591 87622720 -54648724 + MIR3 SINE MIR 23 160 -48 1906 182 25 8 chr9 87622821 87623178 -54648266 - MER89 LTR ERV1 0 559 197 1078 180 43 37 chr9 87623226 87623537 -54647907 - MLT1D LTR MaLR 0 505 148 1599 214 30 27 chr9 87623537 87623910 -54647534 - MLT1A2 LTR MaLR 0 374 1 1078 180 43 37 chr9 87623910 87624059 -54647385 - MLT1D LTR MaLR -357 148 1 944 185 34 0 chr9 87624078 87624256 -54647188 + MER5A DNA MER1_type 1 184 -5 230 208 21 0 chr9 87624433 87624481 -54646963 + MER117 DNA MER1_type 110 158 -39 21 36 0 0 chr9 87625692 87625720 -54645724 + AT_rich Low_complexity Low_complexity 1 28 0 708 261 0 0 chr9 87625722 87625898 -54645546 - MIR SINE MIR -6 256 81 1252 173 80 53 chr9 87627330 87627760 -54643684 + LTR54 LTR ERV1 10 505 -5 353 234 31 31 chr9 87628639 87628767 -54642677 - Charlie7 DNA MER1_type -52 2560 2433 259 250 120 22 chr9 87628758 87628850 -54642594 - Charlie7 DNA MER1_type -2511 101 1 * 234 326 88 33 chr9 87628911 87629092 -54642352 + MIR3 SINE MIR 12 202 -6 500 120 26 94 chr9 87629348 87629465 -54641979 + MLT2D LTR ERVL 5 113 -301 852 132 6 86 chr9 87629493 87629667 -54641777 - MER50 LTR ERV1 -572 162 3 186 250 56 42 chr9 87629823 87629895 -54641549 - L2 LINE L2 -77 3195 3123 632 239 47 15 chr9 87630122 87630407 -54641037 - L1MC5 LINE L1 -520 7495 7274 279 263 193 0 chr9 87630401 87630515 -54640929 - L1MC4 LINE L1 -786 7256 7121 * 1343 208 208 9 chr9 87630531 87630997 -54640447 - MLT2F LTR ERVL -25 638 80 255 277 100 31 chr9 87631701 87631831 -54639613 + MIR3 SINE MIR 67 205 -3 1330 120 0 0 chr9 87632179 87632371 -54639073 - AluSg/x SINE Alu 0 312 129 43511 33 25 1 chr9 87632378 87638379 -54633065 - L1PA2 LINE L1 -1 6154 9 1064 103 0 0 chr9 87638379 87638515 -54632929 - AluY SINE Alu -175 136 1 243 61 0 0 chr9 87639961 87639994 -54631450 + (TG)n Simple_repeat Simple_repeat 1 33 0 25 31 0 0 chr9 87640146 87640178 -54631266 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr9 87640250 87640278 -54631166 + AT_rich Low_complexity Low_complexity 1 28 0 813 217 42 55 chr9 87640345 87640562 -54630882 - MIR SINE MIR -21 241 28 2113 125 0 0 chr9 87640770 87641071 -54630373 - AluSx SINE Alu 0 303 3 335 311 108 73 chr9 87641746 87642154 -54629290 - L2 LINE L2 0 3272 2851 362 245 31 31 chr9 87642311 87642409 -54629035 - MIR SINE MIR -30 232 135 2010 156 6 27 chr9 87642440 87642503 -54628941 - MLT1B LTR MaLR -2 388 325 2077 122 3 3 chr9 87642503 87642817 -54628627 - AluSx SINE Alu 0 314 1 2010 156 6 27 chr9 87642817 87643080 -54628364 - MLT1B LTR MaLR -65 325 68 495 230 10 0 chr9 87643097 87643197 -54628247 - MIR SINE MIR -157 105 5 342 367 48 26 chr9 87643201 87643514 -54627930 - L2 LINE L2 -598 2716 2397 254 185 0 19 chr9 87643840 87643894 -54627550 + (TG)n Simple_repeat Simple_repeat 2 54 0 1747 136 35 54 chr9 87643992 87644308 -54627136 + AluJb SINE Alu 3 312 0 181 209 0 23 chr9 87644572 87644615 -54626829 - MIR SINE MIR -51 211 170 270 263 25 12 chr9 87644719 87644799 -54626645 + L2 LINE L2 3136 3216 -56 204 304 130 17 chr9 87644892 87645007 -54626437 - L2 LINE L2 0 3313 3186 29 28 0 0 chr9 87645101 87645137 -54626307 + AT_rich Low_complexity Low_complexity 1 36 0 2056 132 3 0 chr9 87645272 87645559 -54625885 - AluSx SINE Alu -13 299 12 398 276 123 92 chr9 87645879 87646172 -54625272 - L2 LINE L2 0 3272 2971 263 250 14 28 chr9 87646213 87646285 -54625159 + MER58A DNA MER1_type 1 71 -36 3212 200 26 5 chr9 87646292 87646911 -54624533 - L1MB5 LINE L1 -8 6166 5535 959 172 90 47 chr9 87646912 87647027 -54624417 - AluJo SINE Alu -69 243 134 323 44 22 0 chr9 87647027 87647072 -54624372 + (TA)n Simple_repeat Simple_repeat 2 47 0 959 172 90 47 chr9 87647072 87647189 -54624255 - AluJo SINE Alu -178 134 1 1412 103 30 17 chr9 87647195 87647428 -54624016 - L1MB5 LINE L1 -685 5489 5254 525 223 0 8 chr9 87647405 87647526 -54623918 - L1M4 LINE L1 -2469 3677 3558 * 779 250 5 22 chr9 87647526 87647710 -54623734 + MER58A DNA MER1_type 38 218 -6 1074 186 96 34 chr9 87648070 87648389 -54623055 - L1MB5 LINE L1 -320 5854 5425 27 29 0 0 chr9 87648404 87648438 -54623006 + AT_rich Low_complexity Low_complexity 1 34 0 1906 112 56 21 chr9 87648438 87648724 -54622720 - AluSq SINE Alu -17 296 1 32 26 0 0 chr9 87649165 87649204 -54622240 + AT_rich Low_complexity Low_complexity 1 39 0 1332 241 88 82 chr9 87649211 87649429 -54622015 + HAL1b LINE L1 637 852 -496 2313 112 3 0 chr9 87649429 87649733 -54621711 - AluSx SINE Alu -7 305 1 1332 241 88 82 chr9 87649733 87650196 -54621248 + HAL1b LINE L1 852 1322 -26 296 307 20 10 chr9 87650908 87651009 -54620435 + CT-rich Low_complexity Low_complexity 3 104 0 2115 87 3 7 chr9 87651658 87651946 -54619498 - AluSc SINE Alu -7 302 16 206 384 63 13 chr9 87652434 87652593 -54618851 + L2 LINE L2 3100 3266 -6 190 280 60 0 chr9 87652608 87652658 -54618786 - MIR3 SINE MIR -21 187 135 233 376 67 36 chr9 87652786 87652980 -54618464 + L2 LINE L2 2995 3194 -78 302 232 72 7 chr9 87653072 87653210 -54618234 - L1M4 LINE L1 -823 5323 5177 302 350 168 0 chr9 87653338 87653481 -54617963 - L2 LINE L2 0 3272 3106 2377 108 3 0 chr9 87653504 87653811 -54617633 + AluSp SINE Alu 1 308 -5 309 263 124 36 chr9 87654113 87654307 -54617137 + MIR SINE MIR 46 256 -6 1962 126 0 27 chr9 87654389 87654682 -54616762 + AluSg SINE Alu 1 285 -25 441 50 0 0 chr9 87654682 87654742 -54616702 + (TA)n Simple_repeat Simple_repeat 2 61 0 912 254 176 20 chr9 87655585 87655758 -54615686 + MLT1G LTR MaLR 1 146 -425 2390 119 26 32 chr9 87655758 87656135 -54615309 - THE1C LTR MaLR 0 375 1 912 254 176 20 chr9 87656135 87656463 -54614981 + MLT1G LTR MaLR 146 553 -18 532 237 17 51 chr9 87656478 87656640 -54614804 - L1ME1 LINE L1 -105 6061 5904 2261 117 0 0 chr9 87656640 87656938 -54614506 - AluSx SINE Alu -14 298 1 532 237 17 51 chr9 87656938 87656952 -54614492 - L1ME1 LINE L1 -262 5904 5891 436 200 0 0 chr9 87656953 87657023 -54614421 + FRAM SINE Alu 77 146 -30 231 36 0 0 chr9 87657027 87657055 -54614389 + (TAA)n Simple_repeat Simple_repeat 2 29 0 295 175 0 18 chr9 87657066 87657123 -54614321 + MLT1G LTR MaLR 533 588 -2 1656 159 14 4 chr9 87657753 87658030 -54613414 + AluJo SINE Alu 1 280 -32 183 42 0 0 chr9 87658031 87658055 -54613389 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2309 113 0 0 chr9 87659179 87659480 -54611964 - AluSx SINE Alu -10 302 2 1045 136 0 0 chr9 87660898 87661052 -54610392 - MLT1B LTR MaLR 0 390 237 1563 180 90 4 chr9 87661075 87661406 -54610038 - MLT1B LTR MaLR -79 311 1 1667 161 21 91 chr9 87661889 87662274 -54609170 + MLT1A2 LTR MaLR 1 358 -16 337 240 29 48 chr9 87663249 87663353 -54608091 + MIR SINE MIR 104 205 -57 212 200 18 0 chr9 87663392 87663447 -54607997 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 635 275 26 16 chr9 87664629 87664822 -54606622 + MLT1J2 LTR MaLR 161 355 -95 749 191 16 0 chr9 87665374 87665500 -54605944 + FLAM_A SINE Alu 4 131 -2 345 188 50 38 chr9 87665511 87665562 -54605882 + MER103 DNA DNA 48 102 -64 1184 238 0 0 chr9 87665562 87665785 -54605659 + MER58A DNA MER1_type 2 224 0 345 188 50 38 chr9 87665785 87665813 -54605631 + MER103 DNA DNA 102 128 -38 231 290 130 29 chr9 87667225 87667363 -54604081 + MIR3 SINE MIR 26 177 -31 291 253 13 25 chr9 87667425 87667504 -54603940 - MER5A DNA MER1_type -76 113 36 682 273 70 8 chr9 87668292 87668534 -54602910 + LTR33A LTR ERVL 255 511 -12 350 273 149 26 chr9 87669672 87669826 -54601618 - MIR SINE MIR -37 225 53 204 179 0 0 chr9 87671462 87671501 -54599943 + A-rich Low_complexity Low_complexity 1 39 0 6897 142 22 45 chr9 87672404 87673095 -54598349 + Tigger3b DNA MER2_type 2 707 -2321 2455 92 0 0 chr9 87673095 87673401 -54598043 + AluSg1 SINE Alu 1 306 -3 6897 142 22 45 chr9 87673401 87673676 -54597768 + Tigger3b DNA MER2_type 707 935 -2093 760 180 47 8 chr9 87673676 87673804 -54597640 - FLAM_C SINE Alu 0 133 1 6897 142 22 45 chr9 87673804 87674095 -54597349 + Tigger3b DNA MER2_type 935 1231 0 578 268 92 0 chr9 87674192 87674356 -54597088 - MER5A DNA MER1_type -3 186 8 257 219 0 61 chr9 87674501 87674583 -54596861 - MIR SINE MIR -7 255 179 295 262 58 89 chr9 87674616 87674807 -54596637 + L2 LINE L2 2992 3176 -137 843 98 0 0 chr9 87674826 87674949 -54596495 + (TTCC)n Simple_repeat Simple_repeat 2 124 0 319 299 116 20 chr9 87675036 87675183 -54596261 - MIR SINE MIR -86 176 16 6722 210 34 23 chr9 87675648 87678511 -54592933 - L1MD1 LINE L1 0 6242 3349 2649 178 22 31 chr9 87678543 87679033 -54592411 - MER66B LTR ERV1 0 486 1 1180 158 10 0 chr9 87679518 87679721 -54591723 - L1MB3 LINE L1 0 6183 5979 191 244 22 0 chr9 87679865 87679910 -54591534 - MIR SINE MIR -63 145 100 2004 152 52 17 chr9 87680078 87680440 -54591004 - THE1C LTR MaLR 0 375 1 297 344 11 0 chr9 87680561 87680654 -54590790 + MIR SINE MIR 46 139 -123 585 323 103 79 chr9 87680697 87681654 -54589790 + L2 LINE L2 2299 3271 -42 2067 131 0 0 chr9 87682046 87682329 -54589115 - AluJo SINE Alu -3 309 27 4107 152 54 3 chr9 87683372 87684057 -54587387 - L1MC1 LINE L1 0 6333 5614 1458 206 83 90 chr9 87684071 87684636 -54586808 - L1MC5 LINE L1 -32 7929 7368 2311 94 0 0 chr9 87684636 87684935 -54586509 - AluSx SINE Alu -13 299 1 1458 206 83 90 chr9 87684935 87685033 -54586411 - L1MC5 LINE L1 -593 7368 7271 996 203 61 5 chr9 87685062 87685259 -54586185 + MER3 DNA MER1_type 2 209 0 346 264 74 8 chr9 87685832 87685953 -54585491 + MLT1I LTR MaLR 4 132 -277 460 282 74 27 chr9 87686006 87686155 -54585289 + MLT1I LTR MaLR 244 399 -10 207 232 63 74 chr9 87686481 87686576 -54584868 + L2 LINE L2 3158 3251 -62 2681 169 7 2 chr9 87686878 87687292 -54584152 - MER47B DNA MER2_type -1 417 2 1482 138 9 0 chr9 87687424 87687642 -54583802 - AluSg/x SINE Alu -7 303 84 24 0 0 0 chr9 87687720 87687744 -54583700 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 87687935 87687957 -54583487 + AT_rich Low_complexity Low_complexity 1 22 0 630 264 42 76 chr9 87689249 87689660 -54581784 - MLT1L LTR MaLR 0 615 167 2690 228 62 24 chr9 87689786 87690579 -54580865 - MER69 DNA AcHobo -12 2514 1692 21 0 0 0 chr9 87690645 87690666 -54580778 + AT_rich Low_complexity Low_complexity 1 21 0 870 103 22 15 chr9 87690666 87690802 -54580642 - L1MA5A LINE L1 -1 6296 6160 812 255 137 7 chr9 87690892 87691163 -54580281 - MER69 DNA AcHobo -903 323 18 219 327 89 10 chr9 87691550 87691651 -54579793 - MIR3 SINE MIR -97 111 3 413 244 26 35 chr9 87692115 87692230 -54579214 - L2 LINE L2 0 3272 3159 788 253 178 48 chr9 87692345 87692799 -54578645 + MLT1H1 LTR MaLR 32 544 -11 402 254 90 104 chr9 87693518 87693797 -54577647 + Charlie8 DNA MER1_type 1 275 -2142 368 181 28 0 chr9 87694042 87694114 -54577330 - MER53 DNA DNA -8 181 108 586 268 49 0 chr9 87694849 87695013 -54576431 - MIR SINE MIR -13 249 78 21 0 0 0 chr9 87697775 87697796 -54573648 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr9 87699862 87699882 -54571562 + (TC)n Simple_repeat Simple_repeat 1 20 0 501 289 42 32 chr9 87700416 87700606 -54570838 - MIR SINE MIR -48 214 23 630 237 67 31 chr9 87703427 87703546 -54567898 + MER105 DNA DNA 3 133 -71 3858 114 7 128 chr9 87703546 87704267 -54567177 + MER51A LTR ERV1 1 634 0 630 237 67 31 chr9 87704267 87704341 -54567103 + MER105 DNA DNA 133 203 -1 303 278 38 101 chr9 87704461 87704670 -54566774 - L2 LINE L2 -197 3075 2880 2082 118 3 14 chr9 87704919 87705250 -54566194 + AluJo SINE Alu 1 312 0 220 267 0 17 chr9 87705396 87705456 -54565988 + CT-rich Low_complexity Low_complexity 3 61 0 21 82 0 0 chr9 87705740 87705789 -54565655 + AT_rich Low_complexity Low_complexity 1 49 0 293 343 10 0 chr9 87706350 87706449 -54564995 - MIR SINE MIR -6 256 157 385 328 25 8 chr9 87706668 87706790 -54564654 - MER5A DNA MER1_type -4 185 62 273 331 128 8 chr9 87707234 87707367 -54564077 + L2 LINE L2 2911 3059 -213 1269 162 89 120 chr9 87707523 87707571 -54563873 - MER7A DNA MER2_type -2692 346 298 2507 91 0 0 chr9 87707571 87707880 -54563564 + AluSc SINE Alu 1 309 0 1269 162 89 120 chr9 87707880 87708190 -54563254 - MER7A DNA MER2_type -2740 298 1 396 177 62 21 chr9 87708287 87708472 -54562972 + L1MA4A LINE L1 6048 6301 0 1430 228 43 6 chr9 87708874 87709203 -54562241 - MER58B DNA MER1_type 0 341 1 1737 147 34 14 chr9 87709700 87709993 -54561451 + AluSx SINE Alu 1 299 -13 1034 196 38 10 chr9 87711027 87711236 -54560208 + MER58 DNA MER1_type 45 259 -2161 353 281 108 6 chr9 87711274 87711441 -54560003 + MIR SINE MIR 15 198 -64 374 325 36 12 chr9 87712297 87712463 -54558981 + MIR SINE MIR 93 262 0 2305 75 16 3 chr9 87712748 87713053 -54558391 + AluY SINE Alu 1 309 -2 1106 143 0 0 chr9 87713681 87713868 -54557576 + AluSg/x SINE Alu 131 317 0 507 262 31 42 chr9 87714129 87714165 -54557279 - MIR SINE MIR 0 262 227 1097 225 108 103 chr9 87714165 87714580 -54556864 - MLT1G1 LTR MaLR 0 595 184 312 70 0 0 chr9 87714580 87714623 -54556821 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1605 188 0 34 chr9 87714625 87714918 -54556526 - AluJo SINE Alu -29 283 1 1097 225 108 103 chr9 87714918 87715091 -54556353 - MLT1G1 LTR MaLR -411 184 1 507 262 31 42 chr9 87715091 87715245 -54556199 - MIR SINE MIR -35 227 74 367 248 106 31 chr9 87715340 87715501 -54555943 + MIR SINE MIR 79 251 -11 980 268 71 16 chr9 87715749 87716130 -54555314 - L1MC/D LINE L1 -2093 5715 5314 21 0 0 0 chr9 87716262 87716283 -54555161 + AT_rich Low_complexity Low_complexity 1 21 0 561 273 86 18 chr9 87716430 87716650 -54554794 + MER102a DNA MER1_type 96 330 0 1791 265 82 80 chr9 87717570 87718401 -54553043 + L1MEd LINE L1 46 904 -5406 2010 150 3 0 chr9 87718401 87718694 -54552750 - AluJo SINE Alu -18 294 1 1791 265 82 80 chr9 87718694 87719373 -54552071 + L1MEd LINE L1 904 1580 -4730 2297 113 6 0 chr9 87719376 87719687 -54551757 + AluSq SINE Alu 1 313 0 390 271 253 30 chr9 87720379 87720936 -54550508 + L1MEd LINE L1 2229 2909 -3220 264 217 123 57 chr9 87720982 87721088 -54550356 - Charlie8 DNA MER1_type -2197 220 108 187 245 71 51 chr9 87721164 87721262 -54550182 - L2 LINE L2 -534 2780 2681 1020 162 0 0 chr9 87721345 87721499 -54549945 - AluSg/x SINE Alu -16 296 143 196 256 0 0 chr9 87721721 87721764 -54549680 + MIR SINE MIR 220 262 0 455 307 204 4 chr9 87722035 87722299 -54549145 + L2 LINE L2 2991 3307 -6 191 354 35 9 chr9 87722969 87723082 -54548362 - MIR SINE MIR -101 161 46 * 200 250 0 0 chr9 87723055 87723091 -54548353 + MIR SINE MIR 40 75 -133 23 0 0 0 chr9 87723298 87723321 -54548123 + AT_rich Low_complexity Low_complexity 1 23 0 2376 196 32 73 chr9 87724330 87724977 -54546467 - L1MC4a LINE L1 -734 7074 6454 270 0 0 0 chr9 87726045 87726075 -54545369 + (TG)n Simple_repeat Simple_repeat 2 31 0 233 241 0 19 chr9 87726133 87726187 -54545257 + CT-rich Low_complexity Low_complexity 4 56 0 859 205 94 22 chr9 87726252 87726476 -54544968 - L1PB4 LINE L1 -1 6155 5916 298 79 0 0 chr9 87726485 87726523 -54544921 - U2 snRNA snRNA -150 38 1 287 65 22 0 chr9 87726908 87726954 -54544490 + (CAA)n Simple_repeat Simple_repeat 2 48 0 375 214 36 22 chr9 87727661 87727773 -54543671 + MLT2F LTR ERVL 3 130 -498 1287 242 58 17 chr9 87727803 87728163 -54543281 + MLT2F LTR ERVL 289 663 0 361 255 132 0 chr9 87728242 87728348 -54543096 - MIR SINE MIR -103 159 40 311 338 141 34 chr9 87728405 87728639 -54542805 + L1ME LINE L1 5378 5636 -534 239 306 0 0 chr9 87729166 87729228 -54542216 - MIR SINE MIR -57 151 90 6556 145 49 33 chr9 87729762 87730967 -54540477 + Tigger3b DNA MER2_type 8 1231 0 191 399 81 0 chr9 87731142 87731290 -54540154 + L2 LINE L2 3014 3173 -99 1030 211 5 31 chr9 87732907 87733101 -54538343 + MER5A DNA MER1_type 1 189 0 210 341 44 49 chr9 87734422 87734648 -54536796 + L2 LINE L2 2563 2787 -527 288 0 0 0 chr9 87735133 87735165 -54536279 + (TG)n Simple_repeat Simple_repeat 2 33 0 2208 98 7 10 chr9 87736321 87736616 -54534828 - AluSg SINE Alu -15 295 2 2246 101 0 3 chr9 87736617 87736905 -54534539 - AluSq SINE Alu -11 302 16 235 342 111 21 chr9 87738122 87738356 -54533088 + L2 LINE L2 2921 3175 -138 204 293 37 0 chr9 87738361 87738443 -54533001 + (TA)n Simple_repeat Simple_repeat 2 86 0 189 209 30 45 chr9 87738463 87738530 -54532914 + L2 LINE L2 3172 3237 -76 1550 192 29 4 chr9 87738600 87738881 -54532563 - AluJo SINE Alu -24 288 1 281 242 125 39 chr9 87739952 87740080 -54531364 + MIR3 SINE MIR 36 174 -34 751 197 0 0 chr9 87740693 87740815 -54530629 - FLAM_A SINE Alu -11 122 1 2323 98 0 0 chr9 87741896 87742192 -54529252 - AluSx SINE Alu -16 296 1 228 290 11 21 chr9 87742252 87742345 -54529099 - L2 LINE L2 -5 3308 3217 558 79 0 0 chr9 87743253 87743329 -54528115 - MADE1 DNA Mariner 0 80 5 365 270 83 69 chr9 87743959 87744163 -54527281 + MIR SINE MIR 40 246 -16 2218 172 125 67 chr9 87745990 87746526 -54524918 - MLT1F1 LTR MaLR 0 567 1 261 375 46 9 chr9 87746527 87746743 -54524701 + MIR SINE MIR 25 248 -14 255 182 0 0 chr9 87750224 87750268 -54521176 - Charlie7 DNA MER1_type -1923 689 646 5106 154 50 65 chr9 87750293 87751406 -54520038 + L1MC3 LINE L1 6689 7785 0 1097 200 24 5 chr9 87751440 87751650 -54519794 - MER20 DNA MER1_type -4 215 2 201 195 0 0 chr9 87752326 87752367 -54519077 + (CA)n Simple_repeat Simple_repeat 2 42 0 2346 69 7 14 chr9 87752384 87752674 -54518770 + AluY SINE Alu 3 290 -21 1011 246 86 68 chr9 87753338 87753793 -54517651 - MLT1H LTR MaLR -15 534 72 2344 138 22 0 chr9 87754181 87754537 -54516907 - THE1B LTR MaLR 0 364 1 276 280 88 0 chr9 87754795 87754920 -54516524 - MIR SINE MIR -70 192 57 1910 99 103 0 chr9 87755795 87756068 -54515376 + AluSq SINE Alu 1 301 -12 213 238 20 30 chr9 87757484 87757585 -54513859 + (TTATA)n Simple_repeat Simple_repeat 5 104 0 300 53 0 0 chr9 87757865 87757903 -54513541 + (CA)n Simple_repeat Simple_repeat 2 39 0 630 303 25 20 chr9 87758275 87758519 -54512925 + MIR SINE MIR 2 246 -16 25 0 0 0 chr9 87758528 87758553 -54512891 + AT_rich Low_complexity Low_complexity 1 25 0 187 163 20 61 chr9 87760013 87760062 -54511382 + MIR SINE MIR 82 128 -80 2159 209 20 73 chr9 87760180 87760765 -54510679 - MLT2B3 LTR ERVL 0 554 1 244 235 139 26 chr9 87760775 87760890 -54510554 + MIR SINE MIR 122 249 -13 992 273 151 16 chr9 87761297 87761729 -54509715 - LTR33 LTR ERVL -3 518 29 4593 152 38 35 chr9 87761765 87762634 -54508810 + MER4D LTR ERV1 1 872 -31 334 58 211 0 chr9 87762607 87762659 -54508785 + MER4C LTR ERV1 403 465 0 * 358 231 55 0 chr9 87762841 87762932 -54508512 + MER94 DNA DNA 39 134 0 529 259 80 0 chr9 87763676 87763838 -54507606 + MLT1L LTR MaLR 99 273 -342 430 228 51 89 chr9 87764311 87764419 -54507025 + LTR33 LTR ERVL 370 472 -49 2361 90 3 0 chr9 87764419 87764709 -54506735 - AluSg SINE Alu -19 291 1 430 228 51 89 chr9 87764709 87764758 -54506686 + LTR33 LTR ERVL 472 521 0 398 250 17 8 chr9 87766010 87766130 -54505314 - L2 LINE L2 -2 3311 3191 862 191 0 18 chr9 87766211 87766379 -54505065 + FRAM SINE Alu 1 164 -12 2469 58 6 0 chr9 87766599 87766912 -54504532 + L1PA4 LINE L1 5841 6155 0 301 227 106 91 chr9 87767057 87767147 -54504297 + MIR SINE MIR 128 222 -40 1015 161 45 132 chr9 87767147 87767502 -54503942 - MER33 DNA MER1_type 0 324 1 301 227 106 91 chr9 87767502 87767543 -54503901 + MIR SINE MIR 222 261 -1 416 224 69 17 chr9 87768615 87768731 -54502713 - MIR SINE MIR -87 175 54 383 297 135 11 chr9 87769177 87769477 -54501967 + MLT1I LTR MaLR 66 408 -1 1357 297 99 32 chr9 87769778 87770997 -54500447 + L2 LINE L2 2009 3313 0 700 274 62 72 chr9 87771090 87771382 -54500062 + MER115 DNA AcHobo 11 299 -394 601 261 138 0 chr9 87771375 87771578 -54499866 + MER115 DNA AcHobo 463 693 0 * 287 280 10 10 chr9 87771778 87771878 -54499566 + L1ME4a LINE L1 5719 5818 -303 217 286 129 14 chr9 87771937 87772077 -54499367 - MIR SINE MIR -18 244 89 293 293 121 14 chr9 87772236 87772376 -54499068 + MIR SINE MIR 101 255 -7 279 239 87 38 chr9 87772707 87772891 -54498553 + L1ME4a LINE L1 5928 6120 -1 2658 39 0 7 chr9 87773051 87773358 -54498086 + AluY SINE Alu 1 305 -6 1180 338 86 24 chr9 87774325 87774857 -54496587 + L2 LINE L2 2077 2575 -697 2017 152 72 43 chr9 87774857 87775271 -54496173 + MSTC LTR MaLR 1 426 -2 1180 338 86 24 chr9 87775271 87775857 -54495587 + L2 LINE L2 2575 3267 -5 2224 118 0 0 chr9 87778508 87778805 -54492639 + AluY SINE Alu 1 297 -14 556 322 102 35 chr9 87779237 87779551 -54491893 + MLT1I LTR MaLR 75 409 0 1840 113 0 0 chr9 87779937 87780185 -54491259 - AluSc SINE Alu -1 308 61 201 301 175 0 chr9 87780325 87780428 -54491016 - L2 LINE L2 -1 3271 3151 213 94 0 0 chr9 87781257 87781289 -54490155 + (T)n Simple_repeat Simple_repeat 1 32 0 1639 122 4 0 chr9 87782237 87782466 -54488978 + AluSg/x SINE Alu 75 304 -6 363 255 178 25 chr9 87782631 87782788 -54488656 + MER5A DNA MER1_type 9 189 0 704 269 84 68 chr9 87784338 87784654 -54486790 - L1ME4a LINE L1 -71 6050 5722 1009 7 29 7 chr9 87784654 87784793 -54486651 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 704 269 84 68 chr9 87784793 87784977 -54486467 - L1ME4a LINE L1 -399 5722 5542 217 67 22 22 chr9 87785469 87785514 -54485930 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 348 127 0 0 chr9 87785665 87785720 -54485724 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 219 114 0 0 chr9 87785894 87785929 -54485515 + (TAA)n Simple_repeat Simple_repeat 1 35 0 970 180 50 35 chr9 87785939 87785980 -54485464 + MER3 DNA MER1_type 1 44 -165 341 266 51 51 chr9 87785980 87786157 -54485287 - MER3 DNA MER1_type 0 209 33 2455 154 54 76 chr9 87786225 87786765 -54484679 - MER44D DNA MER2_type -22 583 1 1762 179 0 26 chr9 87786864 87787176 -54484268 + AluJb SINE Alu 1 304 -8 345 255 136 52 chr9 87787192 87787450 -54483994 + L1M4 LINE L1 3105 3383 -2763 324 312 40 30 chr9 87787663 87787812 -54483632 + L1M4 LINE L1 3656 3802 -2344 2259 123 32 59 chr9 87787812 87788185 -54483259 - THE1B LTR MaLR 0 364 2 324 312 40 30 chr9 87788185 87788336 -54483108 + L1M4 LINE L1 3802 3959 -2187 461 252 96 62 chr9 87788659 87789075 -54482369 + L1M4 LINE L1 4357 4786 -1360 1231 216 151 38 chr9 87789760 87790204 -54481240 + MLT1D LTR MaLR 12 505 0 482 220 0 6 chr9 87791411 87791584 -54479860 + (TG)n Simple_repeat Simple_repeat 1 172 0 204 231 0 0 chr9 87791604 87791682 -54479762 + (TG)n Simple_repeat Simple_repeat 1 78 0 334 253 7 0 chr9 87791712 87792014 -54479430 + (TG)n Simple_repeat Simple_repeat 1 304 0 1510 151 35 12 chr9 87792016 87792275 -54479169 - AluSx SINE Alu -47 265 1 294 237 198 11 chr9 87792799 87792945 -54478499 - MIR SINE MIR -38 224 44 329 287 193 5 chr9 87793056 87793258 -54478186 - MIR SINE MIR -21 241 2 694 287 40 24 chr9 87793844 87794095 -54477349 + MIR SINE MIR 8 262 0 815 243 92 0 chr9 87794334 87794540 -54476904 - MER74B LTR ERVL -342 280 56 5438 131 46 8 chr9 87794924 87795902 -54475542 - L1PB2 LINE L1 -2 6149 5112 180 0 0 0 chr9 87795902 87795922 -54475522 + (TTA)n Simple_repeat Simple_repeat 2 21 0 5438 131 46 8 chr9 87795922 87796082 -54475362 - L1PB2 LINE L1 -1039 5112 4960 6487 208 7 7 chr9 87796091 87797464 -54473980 + L1PB2 LINE L1 3595 4967 -1179 217 300 43 129 chr9 87797464 87797674 -54473770 + L2 LINE L2 3116 3307 -6 529 275 39 29 chr9 87797685 87797892 -54473552 - LTR16C LTR ERVL 0 491 283 233 335 26 40 chr9 87799347 87799499 -54471945 + MIR3 SINE MIR 23 172 -36 583 290 87 0 chr9 87799780 87799987 -54471457 - MIR SINE MIR 0 262 38 279 194 258 0 chr9 87801090 87801183 -54470261 + MIR SINE MIR 131 247 -15 6788 224 77 62 chr9 87801559 87804773 -54466671 - L1ME1 LINE L1 -5 6161 2903 40 73 0 0 chr9 87806438 87806520 -54464924 + AT_rich Low_complexity Low_complexity 1 82 0 30 45 0 0 chr9 87806565 87806609 -54464835 + AT_rich Low_complexity Low_complexity 1 44 0 33 66 0 0 chr9 87806721 87806782 -54464662 + AT_rich Low_complexity Low_complexity 1 61 0 359 209 52 17 chr9 87806803 87806975 -54464469 + (TA)n Simple_repeat Simple_repeat 1 178 0 373 326 177 12 chr9 87807851 87808173 -54463271 + L2 LINE L2 1366 1740 -1574 390 364 23 0 chr9 87808869 87809001 -54462443 + MIR SINE MIR 48 182 -80 224 311 82 37 chr9 87810171 87810306 -54461138 - MIR3 SINE MIR -37 171 31 2163 149 55 22 chr9 87810462 87810825 -54460619 + THE1C LTR MaLR 1 375 0 248 256 77 96 chr9 87811307 87811463 -54459981 + L2 LINE L2 2924 3076 -196 1450 230 83 39 chr9 87812389 87812820 -54458624 + MLT1J2 LTR MaLR 1 450 0 373 248 29 19 chr9 87813111 87813216 -54458228 + MER5B DNA MER1_type 1 106 -72 281 333 21 28 chr9 87813358 87813499 -54457945 + MIR SINE MIR 8 147 -115 337 109 0 0 chr9 87813674 87813720 -54457724 - MADE1 DNA Mariner 0 80 35 21 0 0 0 chr9 87814665 87814686 -54456758 + AT_rich Low_complexity Low_complexity 1 21 0 824 149 15 0 chr9 87814686 87814820 -54456624 - AluJo SINE Alu -176 136 1 318 338 22 22 chr9 87814916 87815052 -54456392 - L1ME3 LINE L1 -279 5883 5748 263 213 33 0 chr9 87815223 87815284 -54456160 + MER5A DNA MER1_type 9 71 -118 673 191 238 0 chr9 87815344 87815512 -54455932 - MER3 DNA MER1_type 0 209 2 215 200 40 20 chr9 87816196 87816246 -54455198 - L2 LINE L2 -12 3260 3210 308 274 21 11 chr9 87817861 87817956 -54453488 + MER5B DNA MER1_type 18 113 -65 196 161 0 0 chr9 87817936 87817967 -54453477 - MER5B DNA MER1_type -129 49 19 * 510 230 24 8 chr9 87817973 87818099 -54453345 + MER5A DNA MER1_type 1 128 -61 306 195 23 92 chr9 87818130 87818217 -54453227 + MER5A DNA MER1_type 109 189 0 192 237 211 13 chr9 87818241 87818317 -54453127 + MIR SINE MIR 35 125 -83 1677 231 36 36 chr9 87818897 87819364 -54452080 + MLT1C LTR MaLR 1 467 0 496 244 65 0 chr9 87821293 87821416 -54450028 + MER94 DNA DNA 4 134 0 279 252 17 101 chr9 87821916 87822035 -54449409 + MER5B DNA MER1_type 7 115 -63 369 271 35 35 chr9 87822700 87822870 -54448574 - L1ME4a LINE L1 0 6121 5952 2283 110 0 0 chr9 87823909 87824209 -54447235 - AluSx SINE Alu -12 300 1 260 304 59 29 chr9 87824654 87824858 -54446586 - L1M4 LINE L1 -1800 4346 4137 241 336 41 66 chr9 87824912 87825034 -54446410 - L2 LINE L2 -624 2690 2572 225 139 0 0 chr9 87825069 87825112 -54446332 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 228 238 0 0 chr9 87826092 87826134 -54445310 + (TG)n Simple_repeat Simple_repeat 1 42 0 280 267 26 115 chr9 87826367 87826558 -54444886 - MLT1K LTR MaLR 0 588 415 295 308 69 23 chr9 87826896 87827026 -54444418 + L2 LINE L2 3137 3272 0 2155 94 3 24 chr9 87828347 87828644 -54442800 - AluSc SINE Alu -18 291 1 317 363 90 17 chr9 87828757 87829101 -54442343 + L1M4 LINE L1 4557 4925 -1221 378 288 0 0 chr9 87829232 87829392 -54442052 + (TG)n Simple_repeat Simple_repeat 1 160 0 335 277 0 6 chr9 87829430 87829607 -54441837 + (TG)n Simple_repeat Simple_repeat 1 176 0 260 192 0 0 chr9 87829675 87829727 -54441717 + MER4-int LTR ERV1 1111 1162 -5436 189 274 0 0 chr9 87829752 87829825 -54441619 + (TG)n Simple_repeat Simple_repeat 2 74 0 371 274 7 0 chr9 87829868 87830021 -54441423 + (TG)n Simple_repeat Simple_repeat 1 154 0 327 294 0 0 chr9 87830061 87830224 -54441220 + (TG)n Simple_repeat Simple_repeat 2 164 0 469 321 50 29 chr9 87830374 87830614 -54440830 + L2 LINE L2 2836 3080 -192 294 213 0 38 chr9 87830993 87831073 -54440371 + MER91C DNA MER1_type 64 140 0 218 371 52 21 chr9 87831073 87831170 -54440274 + L2 LINE L2 3138 3237 -35 322 303 69 80 chr9 87831391 87831566 -54439878 - MIR3 SINE MIR -25 183 11 351 321 101 54 chr9 87831704 87832258 -54439186 - MLT1K LTR MaLR -8 580 1 1831 210 32 16 chr9 87832825 87833267 -54438177 + Charlie4a DNA MER1_type 36 484 -24 2005 135 17 7 chr9 87834953 87835250 -54436194 - AluSx SINE Alu -12 300 1 820 267 9 22 chr9 87835273 87835505 -54435939 + MIR SINE MIR 34 262 0 860 216 0 0 chr9 87835531 87835698 -54435746 - FRAM SINE Alu -9 167 1 402 218 117 50 chr9 87836280 87836459 -54434985 + MIR SINE MIR 16 206 -56 2383 149 11 3 chr9 87837094 87837456 -54433988 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr9 87837580 87837605 -54433839 + AT_rich Low_complexity Low_complexity 1 25 0 640 176 13 61 chr9 87838060 87838140 -54433304 - MLT1F LTR MaLR -3 559 499 2044 125 0 36 chr9 87838140 87838444 -54433000 - AluSg1 SINE Alu -16 293 1 640 176 13 61 chr9 87838444 87838525 -54432919 - MLT1F LTR MaLR -63 499 416 854 235 79 22 chr9 87838558 87838842 -54432602 - MLT1F LTR MaLR -233 334 22 2299 93 7 7 chr9 87839531 87839832 -54431612 + AluSq SINE Alu 1 301 -12 421 167 11 11 chr9 87840144 87840234 -54431210 + L1MB3 LINE L1 5939 6028 -155 1903 186 43 0 chr9 87840235 87840580 -54430864 - MLT1A1 LTR MaLR -5 360 1 969 159 0 6 chr9 87840580 87840737 -54430707 + L1MB3 LINE L1 6019 6174 -9 247 228 6 205 chr9 87841072 87841243 -54430201 - MER5B DNA MER1_type -39 139 3 973 212 0 0 chr9 87841710 87841875 -54429569 - FRAM SINE Alu 0 166 2 1722 250 62 41 chr9 87841882 87842565 -54428879 - HsTC2a DNA Tc2 -47 697 1 362 333 70 22 chr9 87842570 87842798 -54428646 - MIR SINE MIR -4 258 20 708 241 63 37 chr9 87843303 87843494 -54427950 + MIR SINE MIR 48 243 -19 532 291 68 39 chr9 87844054 87844260 -54427184 - MIR SINE MIR -3 259 48 444 255 0 0 chr9 87844297 87844391 -54427053 + MER52A LTR ERV1 1 94 -1661 * 6312 165 143 49 chr9 87844363 87845810 -54425634 + MER52A LTR ERV1 202 1755 0 22 0 0 0 chr9 87845892 87845914 -54425530 + AT_rich Low_complexity Low_complexity 1 22 0 3393 214 60 43 chr9 87845914 87847192 -54424252 - L1ME2 LINE L1 -57 6107 4786 302 209 70 60 chr9 87848506 87848623 -54422821 - MIR3 SINE MIR -22 186 65 508 215 141 95 chr9 87849177 87849568 -54421876 + MLT1I LTR MaLR 1 409 0 2568 194 84 9 chr9 87849985 87850566 -54420878 + L1MC3 LINE L1 7143 7767 -18 267 340 9 9 chr9 87850884 87850990 -54420454 - MIR SINE MIR -97 165 60 3259 159 10 21 chr9 87851398 87851919 -54419525 - MLT2B2 LTR ERVL 0 515 1 359 288 13 33 chr9 87852850 87853003 -54418441 + CT-rich Low_complexity Low_complexity 1 150 0 1025 277 103 3 chr9 87854110 87854420 -54417024 + MER58B DNA MER1_type 1 341 0 446 275 161 10 chr9 87856125 87856318 -54415126 + MIR SINE MIR 41 262 0 197 239 0 0 chr9 87856995 87857041 -54414403 - L2 LINE L2 -2 3311 3266 29 90 0 0 chr9 87857294 87857372 -54414072 + AT_rich Low_complexity Low_complexity 1 78 0 310 161 97 0 chr9 87857580 87857642 -54413802 - L1ME2 LINE L1 -201 5963 5896 334 186 36 0 chr9 87857677 87857817 -54413627 + (TA)n Simple_repeat Simple_repeat 2 146 0 2224 96 7 3 chr9 87857838 87858129 -54413315 - AluSg SINE Alu -18 292 1 578 280 93 77 chr9 87858129 87858402 -54413042 - L1ME2 LINE L1 -297 5873 5606 2265 113 10 0 chr9 87858402 87858711 -54412733 - AluSx SINE Alu 0 312 1 578 280 93 77 chr9 87858711 87859777 -54411667 - L1ME2 LINE L1 -564 5606 4497 1598 67 148 14 chr9 87859833 87860056 -54411388 + AluY SINE Alu 37 289 -22 500 56 14 0 chr9 87860056 87860128 -54411316 + (TA)n Simple_repeat Simple_repeat 1 73 0 362 229 41 8 chr9 87860128 87860250 -54411194 - L1ME2 LINE L1 -1642 4504 4379 2310 111 0 6 chr9 87860953 87861268 -54410176 - AluSq SINE Alu 0 313 1 476 217 11 11 chr9 87861636 87861728 -54409716 + MLT1I LTR MaLR 80 171 -238 2381 104 0 0 chr9 87862146 87862455 -54408989 + AluSc SINE Alu 1 309 0 306 318 86 20 chr9 87863687 87863885 -54407559 - MIR SINE MIR -44 218 8 986 140 152 0 chr9 87866462 87866626 -54404818 - MER5A DNA MER1_type 0 189 1 498 248 29 15 chr9 87866921 87867058 -54404386 + MIR SINE MIR 8 146 -116 509 157 0 11 chr9 87867073 87867162 -54404282 - LTR67 LTR ERVL 0 557 470 830 237 63 90 chr9 87867162 87867673 -54403771 + L1MC5 LINE L1 7431 7927 -34 180 77 0 0 chr9 87867925 87867951 -54403493 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 289 332 114 36 chr9 87868128 87868321 -54403123 - L3 LINE CR1 -121 1456 1249 2803 148 11 23 chr9 87868479 87868917 -54402527 + Tigger2a DNA MER2_type 1 433 -1 30 0 0 0 chr9 87870076 87870106 -54401338 + AT_rich Low_complexity Low_complexity 1 30 0 392 278 19 0 chr9 87870298 87870406 -54401038 + L2 LINE L2 3203 3312 -1 744 293 76 16 chr9 87870531 87870845 -54400599 + MER46C DNA MER2_type 6 338 0 1670 129 94 4 chr9 87871275 87871531 -54399913 + AluSq SINE Alu 6 284 -29 234 0 0 0 chr9 87871531 87871557 -54399887 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 214 244 13 77 chr9 87871938 87872016 -54399428 - MIR SINE MIR -113 149 77 2452 50 0 41 chr9 87873827 87874144 -54397300 + AluY SINE Alu 1 304 -7 305 282 115 32 chr9 87874511 87874667 -54396777 + MLT1I LTR MaLR 230 398 -11 23429 86 10 10 chr9 87875102 87879165 -54392279 - L1PA7 LINE L1 -4 6150 2092 2399 162 8 0 chr9 87879165 87879548 -54391896 - L1PA16 LINE L1 -2 6164 5779 343 267 114 70 chr9 87879675 87879948 -54391496 - MARNA DNA Mariner -138 448 164 243 310 60 17 chr9 87880079 87880195 -54391249 + L2 LINE L2 3193 3313 0 2412 78 0 0 chr9 87880639 87880947 -54390497 + AluY SINE Alu 1 308 -3 547 281 0 0 chr9 87882347 87882461 -54388983 + MER81 DNA DNA 1 114 0 222 233 17 33 chr9 87882462 87882522 -54388922 - L2 LINE L2 -7 3265 3207 518 259 23 15 chr9 87883348 87883431 -54388013 - L2 LINE L2 0 3313 3227 213 39 0 0 chr9 87883431 87883457 -54387987 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 518 259 23 15 chr9 87883457 87883504 -54387940 - L2 LINE L2 -86 3227 3182 275 355 150 47 chr9 87886827 87887253 -54384191 - L2 LINE L2 -4 3309 2840 227 288 79 29 chr9 87887667 87887806 -54383638 + MIR SINE MIR 39 184 -78 21 0 0 0 chr9 87888051 87888072 -54383372 + AT_rich Low_complexity Low_complexity 1 21 0 932 169 34 0 chr9 87888075 87888252 -54383192 + L1MC1 LINE L1 6151 6333 0 2324 105 3 0 chr9 87888441 87888745 -54382699 - AluSx SINE Alu -7 305 1 256 282 110 34 chr9 87888756 87889111 -54382333 - L1M4 LINE L1 -1449 4697 4316 1926 156 24 15 chr9 87889159 87889499 -54381945 - MER2 DNA MER2_type 0 344 2 242 225 42 0 chr9 87889522 87889593 -54381851 + (TA)n Simple_repeat Simple_repeat 2 75 0 339 283 54 24 chr9 87889685 87889890 -54381554 - L1M4 LINE L1 -1449 4697 4487 225 250 19 0 chr9 87889918 87889970 -54381474 + (TG)n Simple_repeat Simple_repeat 2 54 0 501 317 50 46 chr9 87889979 87890418 -54381026 + L1ME3A LINE L1 5259 5699 -471 325 275 38 12 chr9 87890468 87890628 -54380816 + L1ME3A LINE L1 5785 5948 -222 1198 169 0 36 chr9 87890909 87891128 -54380316 - AluJb SINE Alu -15 297 87 214 77 179 0 chr9 87891368 87891407 -54380037 + L2 LINE L2 3227 3272 0 419 207 17 69 chr9 87895565 87895681 -54375763 - MER94 DNA DNA -2 132 23 303 254 14 0 chr9 87895849 87895920 -54375524 + MIR SINE MIR 78 149 -113 22 0 0 0 chr9 87895922 87895944 -54375500 + AT_rich Low_complexity Low_complexity 1 22 0 1293 49 0 0 chr9 87896299 87896462 -54374982 - L1PA4 LINE L1 0 6155 5993 758 203 78 0 chr9 87896621 87896774 -54374670 - MER20 DNA MER1_type 0 219 55 4287 203 75 18 chr9 87896781 87897078 -54374366 - MER45B DNA AcHobo -548 1033 754 1826 133 72 7 chr9 87897078 87897356 -54374088 + AluSx SINE Alu 1 296 -16 4287 203 75 18 chr9 87897356 87897447 -54373997 - MER45B DNA AcHobo -827 754 670 2386 93 0 3 chr9 87897447 87897749 -54373695 + AluSq SINE Alu 1 301 -12 4287 203 75 18 chr9 87897749 87898301 -54373143 - MER45B DNA AcHobo -911 670 38 25 0 0 0 chr9 87898598 87898623 -54372821 + AT_rich Low_complexity Low_complexity 1 25 0 246 234 28 47 chr9 87899106 87899213 -54372231 + MIR SINE MIR 103 207 -55 1170 261 122 18 chr9 87899344 87899739 -54371705 - MLT1J2 LTR MaLR -14 436 1 803 271 134 36 chr9 87900257 87900696 -54370748 + Charlie8 DNA MER1_type 40 521 -1896 666 223 65 52 chr9 87900734 87900963 -54370481 - L1MB7 LINE L1 -2 6182 5951 207 0 0 0 chr9 87902059 87902082 -54369362 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1136 283 96 10 chr9 87904016 87904412 -54367032 + LTR16A LTR ERVL 21 450 0 1546 232 31 16 chr9 87905309 87905692 -54365752 - MER74A LTR ERVL -1 557 169 2283 157 55 2 chr9 87905753 87906155 -54365289 - MSTA LTR MaLR 0 428 6 994 177 23 6 chr9 87906382 87906557 -54364887 - MER74A LTR ERVL -380 178 1 334 297 34 0 chr9 87906814 87906932 -54364512 - L1MB7 LINE L1 -2121 5687 5566 709 171 49 0 chr9 87907235 87907358 -54364086 + FLAM_A SINE Alu 10 138 -4 1756 128 87 8 chr9 87907933 87908220 -54363224 + AluSx SINE Alu 1 312 0 542 124 21 0 chr9 87909785 87909882 -54361562 + L1PB2 LINE L1 6053 6151 0 351 242 303 8 chr9 87910054 87910186 -54361258 - MER5B DNA MER1_type 0 178 8 302 296 178 13 chr9 87910212 87910364 -54361080 + MER5A DNA MER1_type 11 187 -2 850 85 23 40 chr9 87911055 87911232 -54360212 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 1617 124 4 0 chr9 87911254 87911479 -54359965 - AluSq SINE Alu -14 299 74 1847 197 28 3 chr9 87912430 87912786 -54358658 + MLT1A1 LTR MaLR 1 365 0 1202 248 199 39 chr9 87912906 87913419 -54358025 + MLT1G1 LTR MaLR 1 595 0 232 354 104 7 chr9 87914161 87914305 -54357139 + MIR3 SINE MIR 20 177 -31 2269 71 30 14 chr9 87915240 87915535 -54355909 + AluY SINE Alu 1 300 -11 568 226 156 10 chr9 87915547 87915746 -54355698 + L1MC4a LINE L1 5674 5901 -1907 21 0 0 0 chr9 87916516 87916537 -54354907 + AT_rich Low_complexity Low_complexity 1 21 0 2259 92 7 7 chr9 87916639 87916934 -54354510 - AluSx SINE Alu -17 295 1 309 185 0 0 chr9 87917048 87917113 -54354331 + (ATG)n Simple_repeat Simple_repeat 2 66 0 210 327 79 0 chr9 87917196 87917297 -54354147 - MIR SINE MIR -57 205 97 343 200 2 0 chr9 87918210 87918276 -54353168 - MLT1E3 LTR MaLR 0 616 489 1487 211 101 83 chr9 87918463 87919008 -54352436 - MLT1E3 LTR MaLR -60 564 10 250 250 31 0 chr9 87919518 87919582 -54351862 - L2 LINE L2 -68 3204 3139 815 206 0 7 chr9 87919830 87919976 -54351468 - FRAM SINE Alu -31 145 1 285 142 113 142 chr9 87920048 87920154 -54351290 + MLT1J LTR MaLR 155 257 -254 2134 127 3 7 chr9 87920267 87920567 -54350877 + AluSx SINE Alu 1 299 -13 2097 123 7 0 chr9 87920613 87920913 -54350531 + AluSp SINE Alu 1 302 -11 758 239 0 0 chr9 87921642 87921801 -54349643 + MER70-int LTR ERVL 421 579 -4444 3523 210 18 3 chr9 87921806 87922464 -54348980 + MER70-int LTR ERVL 1818 2485 -2538 190 350 0 0 chr9 87923189 87923269 -54348175 - MIR3 SINE MIR -7 201 122 2999 113 14 49 chr9 87923303 87923792 -54347652 + MER101 LTR ERV1 3 474 0 267 118 0 0 chr9 87923793 87923827 -54347617 + MER101 LTR ERV1 385 418 -56 631 94 0 0 chr9 87923923 87924008 -54347436 + MER101 LTR ERV1 388 472 -2 1957 134 0 31 chr9 87924391 87924750 -54346694 + AluSx SINE Alu 1 350 0 645 96 0 0 chr9 87925312 87925406 -54346038 + L1PA6 LINE L1 6060 6153 -1 1935 136 14 7 chr9 87926125 87926419 -54345025 - AluJb SINE Alu -16 296 1 265 250 14 0 chr9 87926443 87926515 -54344929 - HAL1b LINE L1 -28 1320 1248 744 203 0 0 chr9 87926586 87926719 -54344725 - FLAM_C SINE Alu 0 133 1 1983 121 36 0 chr9 87926729 87927032 -54344412 - AluSx SINE Alu 0 313 1 210 329 13 0 chr9 87927403 87927479 -54343965 - MIR SINE MIR -184 78 2 214 267 28 165 chr9 87928695 87928719 -54342725 - L2 LINE L2 0 3313 3287 2452 77 3 0 chr9 87928719 87929017 -54342427 + AluSx SINE Alu 1 299 -13 214 267 28 165 chr9 87929017 87929098 -54342346 - L2 LINE L2 -26 3287 3197 2014 141 3 7 chr9 87929098 87929396 -54342048 + AluJo SINE Alu 1 297 -15 214 267 28 165 chr9 87929396 87929682 -54341762 - L2 LINE L2 -116 3197 2975 406 296 117 39 chr9 87930257 87930316 -54341128 + MER46C DNA MER2_type 5 58 -280 2177 130 0 0 chr9 87930316 87930609 -54340835 + AluSx SINE Alu 1 293 -19 406 296 117 39 chr9 87930609 87930856 -54340588 + MER46C DNA MER2_type 58 335 -3 581 296 28 9 chr9 87931445 87931658 -54339786 + MIR SINE MIR 46 262 0 1982 141 0 7 chr9 87931717 87932007 -54339437 + AluJb SINE Alu 1 288 -24 30 21 0 21 chr9 87932007 87932036 -54339408 + AT_rich Low_complexity Low_complexity 1 30 -17 261 0 0 0 chr9 87932036 87932065 -54339379 + (CA)n Simple_repeat Simple_repeat 2 30 0 30 21 0 21 chr9 87932065 87932083 -54339361 + AT_rich Low_complexity Low_complexity 30 47 0 1233 193 37 0 chr9 87932202 87932445 -54338999 - MER34 LTR ERV1 -265 277 26 209 232 29 29 chr9 87932580 87932649 -54338795 + L2 LINE L2 3023 3091 -181 1242 190 19 9 chr9 87932687 87932903 -54338541 - LTR8 LTR ERV1 0 691 474 1060 88 0 7 chr9 87932903 87933039 -54338405 + AluSq/x SINE Alu 1 135 -178 2473 66 0 25 chr9 87933039 87933357 -54338087 + AluY SINE Alu 2 311 0 1686 195 0 19 chr9 87933467 87933775 -54337669 - AluJo SINE Alu -10 302 1 2044 90 0 0 chr9 87933938 87934193 -54337251 - AluY SINE Alu -56 255 1 734 146 39 8 chr9 87934194 87934324 -54337120 + Charlie1 DNA MER1_type 2628 2761 0 368 254 79 0 chr9 87934359 87934473 -54336971 - L2 LINE L2 -1 3312 3190 326 297 210 7 chr9 87934676 87934966 -54336478 + L2 LINE L2 2841 3189 -124 2081 97 17 3 chr9 87935109 87935397 -54336047 + AluSx SINE Alu 1 292 -20 2570 48 0 0 chr9 87935450 87935742 -54335702 + AluY SINE Alu 2 293 -18 1045 207 114 4 chr9 87935748 87936019 -54335425 + AluJb SINE Alu 2 302 0 279 272 35 18 chr9 87936212 87936326 -54335118 - MIR SINE MIR -58 150 35 222 235 78 0 chr9 87936865 87936916 -54334528 - MIR SINE MIR -119 143 89 311 302 161 21 chr9 87937299 87937491 -54333953 - MIR SINE MIR -38 224 6 2054 151 74 3 chr9 87937513 87937877 -54333567 - MLT1B LTR MaLR 0 390 1 2004 82 112 0 chr9 87937999 87938267 -54333177 + AluY SINE Alu 1 298 -13 1729 170 35 3 chr9 87938327 87938615 -54332829 - AluJo SINE Alu -15 297 1 573 284 70 37 chr9 87938956 87939199 -54332245 + MIR SINE MIR 12 262 0 2007 151 0 25 chr9 87939972 87940291 -54331153 + AluJb SINE Alu 2 312 0 1001 181 226 4 chr9 87940881 87941124 -54330320 + AluJo SINE Alu 1 297 -5 1834 175 33 19 chr9 87941732 87942092 -54329352 - MLT1A1 LTR MaLR 0 365 1 235 330 78 0 chr9 87942980 87943083 -54328361 - MIR3 SINE MIR -89 119 9 1216 230 163 28 chr9 87943560 87943995 -54327449 - Charlie1a DNA MER1_type -961 494 1 464 328 94 33 chr9 87943997 87944241 -54327203 - L1M4 LINE L1 -1945 4201 3943 1688 193 23 3 chr9 87944251 87944557 -54326887 - AluJo SINE Alu 0 312 1 712 142 24 137 chr9 87944865 87945077 -54326367 + MER53 DNA DNA 2 189 0 787 148 28 21 chr9 87945645 87945787 -54325657 + AluJb SINE Alu 2 144 -168 1981 130 0 17 chr9 87945789 87946081 -54325363 + AluSx SINE Alu 25 311 -1 401 240 20 10 chr9 87947266 87947366 -54324078 + MER5A DNA MER1_type 9 109 -80 2507 74 0 3 chr9 87947983 87948292 -54323152 - AluY SINE Alu -2 309 2 195 221 59 29 chr9 87948808 87948876 -54322568 + L2 LINE L2 1962 2031 -1283 467 311 47 33 chr9 87948884 87949096 -54322348 + MIR SINE MIR 5 219 -43 199 384 0 18 chr9 87949208 87949320 -54322124 + L2 LINE L2 2223 2332 -982 588 276 25 12 chr9 87950373 87950536 -54320908 + MIR SINE MIR 13 177 -85 198 229 112 84 chr9 87950762 87950941 -54320503 + L2 LINE L2 2574 2757 -557 362 248 90 86 chr9 87952457 87952679 -54318765 - L2 LINE L2 -49 3223 3001 2151 174 110 50 chr9 87952684 87953096 -54318348 - MLT1F1 LTR MaLR -4 563 112 210 71 0 0 chr9 87953096 87953124 -54318320 + (CTATT)n Simple_repeat Simple_repeat 4 31 0 2151 174 110 50 chr9 87953124 87953228 -54318216 - MLT1F1 LTR MaLR -455 112 16 1050 243 59 13 chr9 87953245 87953484 -54317960 - MIR SINE MIR 0 262 13 189 244 0 0 chr9 87954117 87954158 -54317286 + MIR SINE MIR 212 252 -10 247 281 0 24 chr9 87954509 87954591 -54316853 + GA-rich Low_complexity Low_complexity 1 80 0 385 258 66 53 chr9 87954711 87954817 -54316627 - MIR SINE MIR -78 184 74 189 107 0 0 chr9 87954817 87954845 -54316599 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 385 258 66 53 chr9 87954845 87954889 -54316555 - MIR SINE MIR -188 74 32 315 0 0 0 chr9 87955012 87955047 -54316397 + (CA)n Simple_repeat Simple_repeat 1 35 0 265 143 20 20 chr9 87955626 87955675 -54315769 + L2 LINE L2 3259 3307 -6 287 308 179 57 chr9 87956894 87957953 -54313491 + L2 LINE L2 1181 2369 -945 200 354 24 12 chr9 87958616 87958698 -54312746 + L2 LINE L2 2983 3065 -207 868 176 13 0 chr9 87959066 87959243 -54312201 - AluSg/x SINE Alu 0 306 128 623 241 108 33 chr9 87959430 87959671 -54311773 + L2 LINE L2 2656 2914 -400 360 266 44 95 chr9 87959704 87959862 -54311582 + L2 LINE L2 3123 3272 0 246 302 64 74 chr9 87960031 87960233 -54311211 + MIR3 SINE MIR 6 205 -3 2310 94 0 0 chr9 87960789 87961077 -54310367 + AluSx SINE Alu 12 299 -13 1932 80 76 4 chr9 87961078 87961329 -54310115 + AluSq SINE Alu 34 302 -11 219 329 29 50 chr9 87961329 87961469 -54309975 - L2 LINE L2 -1325 1989 1853 292 274 74 0 chr9 87961552 87961647 -54309797 - L2 LINE L2 -2 3311 3210 226 250 0 88 chr9 87962108 87962176 -54309268 + L2 LINE L2 3211 3272 0 236 309 12 0 chr9 87962250 87962334 -54309110 - MIR SINE MIR -7 255 171 1094 127 0 0 chr9 87962445 87962595 -54308849 + AluSg/x SINE Alu 157 306 -6 292 299 35 11 chr9 87962595 87962682 -54308762 - MIR SINE MIR -173 89 1 265 283 126 81 chr9 87962707 87962930 -54308514 - L3 LINE CR1 -2 1575 1343 22 0 0 0 chr9 87963018 87963040 -54308404 + AT_rich Low_complexity Low_complexity 1 22 0 1129 151 0 11 chr9 87964792 87964971 -54306473 - AluJb SINE Alu -5 307 131 1825 117 4 0 chr9 87964981 87965251 -54306193 - AluSq SINE Alu 0 307 37 219 186 0 0 chr9 87965973 87966016 -54305428 + A-rich Low_complexity Low_complexity 3 45 0 244 229 0 49 chr9 87966368 87966429 -54305015 + L2 LINE L2 3212 3269 -3 1989 304 154 9 chr9 87967224 87968321 -54303123 + L2 LINE L2 1396 2651 -663 984 144 13 0 chr9 87968349 87968502 -54302942 - AluSg/x SINE Alu -17 295 141 733 286 95 69 chr9 87968602 87968895 -54302549 + L2 LINE L2 2638 2922 -350 2609 46 0 10 chr9 87968895 87969199 -54302245 - AluY SINE Alu -10 301 1 733 286 95 69 chr9 87969199 87969341 -54302103 + L2 LINE L2 2922 3059 -213 2146 107 7 7 chr9 87969341 87969632 -54301812 - AluJo SINE Alu -21 291 1 733 286 95 69 chr9 87969632 87969800 -54301644 + L2 LINE L2 3059 3264 -8 192 158 0 0 chr9 87969813 87969851 -54301593 + (TAGG)n Simple_repeat Simple_repeat 1 38 0 483 287 124 19 chr9 87969860 87970069 -54301375 + MIR SINE MIR 32 262 0 300 267 20 20 chr9 87970069 87970170 -54301274 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 479 267 33 0 chr9 87970371 87970491 -54300953 - MIR SINE MIR -71 191 68 257 281 73 39 chr9 87970994 87971194 -54300250 - MIR SINE MIR -6 256 8 1925 138 17 20 chr9 87972365 87972662 -54298782 + AluJo SINE Alu 2 297 -15 2142 122 0 32 chr9 87972663 87972974 -54298470 + AluSx SINE Alu 1 301 -11 492 261 56 47 chr9 87973044 87973259 -54298185 + L1M4 LINE L1 5147 5363 -783 2445 78 0 0 chr9 87973327 87973622 -54297822 - AluY SINE Alu -16 295 1 767 161 0 0 chr9 87973637 87973749 -54297695 - AluSg/x SINE Alu -13 299 188 2426 55 0 42 chr9 87973973 87974283 -54297161 + AluY SINE Alu 1 297 -14 227 373 141 29 chr9 87974337 87974643 -54296801 + L2 LINE L2 2917 3256 -16 1994 155 0 3 chr9 87974694 87974990 -54296454 - AluJo SINE Alu -9 303 9 331 200 80 13 chr9 87974992 87975067 -54296377 + L3 LINE CR1 795 874 -703 393 318 34 27 chr9 87975073 87975221 -54296223 - L2 LINE L2 -4 3309 3161 511 259 9 0 chr9 87976320 87976432 -54295012 + MIR SINE MIR 53 165 -97 2598 57 0 0 chr9 87976434 87976733 -54294711 + AluY SINE Alu 1 299 -12 204 321 83 0 chr9 87976775 87976859 -54294585 - MIR SINE MIR -70 192 102 257 216 0 0 chr9 87977157 87977208 -54294236 + L2 LINE L2 3263 3313 0 218 306 92 41 chr9 87977201 87977299 -54294145 - L2 LINE L2 -837 2477 2375 * 642 341 100 47 chr9 87977436 87977776 -54293668 - L2 LINE L2 0 3272 2915 325 321 45 66 chr9 87977960 87978203 -54293241 - L2 LINE L2 -431 2883 2646 834 126 0 0 chr9 87978326 87978437 -54293007 - AluSq/x SINE Alu -179 133 23 635 79 20 0 chr9 87978451 87978552 -54292892 + Ricksha DNA DNA 2631 2733 -121 1932 141 0 17 chr9 87978552 87978843 -54292601 + AluSx SINE Alu 1 286 -26 282 29 0 0 chr9 87978845 87978880 -54292564 + (TG)n Simple_repeat Simple_repeat 2 36 0 1150 253 38 0 chr9 87978907 87979247 -54292197 - L1ME4a LINE L1 -240 5881 5529 2456 101 0 0 chr9 87979315 87979623 -54291821 + AluSx SINE Alu 1 308 -4 312 214 118 112 chr9 87980040 87980218 -54291226 - MER91A DNA MER1_type 0 196 18 240 70 0 0 chr9 87980934 87981039 -54290405 + Alu SINE Alu 260 364 0 354 356 0 9 chr9 87981078 87981193 -54290251 - MIR SINE MIR -129 133 20 977 343 46 3 chr9 87981254 87981601 -54289843 + L3 LINE CR1 1138 1499 -78 421 269 65 9 chr9 87982586 87982694 -54288750 + L2 LINE L2 3144 3257 -15 339 25 0 0 chr9 87982696 87982736 -54288708 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 321 315 0 11 chr9 87982896 87982988 -54288456 + L3 LINE CR1 1028 1118 -459 564 304 119 5 chr9 87983048 87983242 -54288202 + MIR SINE MIR 36 251 -11 217 253 36 24 chr9 87985245 87985328 -54286116 + GA-rich Low_complexity Low_complexity 5 88 0 188 169 254 0 chr9 87985328 87985387 -54286057 - MIR SINE MIR -6 256 183 660 304 140 14 chr9 87985488 87985903 -54285541 + L2 LINE L2 2243 2709 -605 250 229 35 174 chr9 87986245 87986389 -54285055 + L2 LINE L2 3133 3256 -16 2198 104 7 0 chr9 87986482 87986791 -54284653 + AluSx SINE Alu 1 311 0 1850 155 3 14 chr9 87986801 87987092 -54284352 + AluJo SINE Alu 1 288 -24 2009 56 4 0 chr9 87987252 87987486 -54283958 + AluY SINE Alu 1 235 -76 208 354 78 10 chr9 87989016 87989310 -54282134 + L2 LINE L2 162 475 -2839 1463 96 55 0 chr9 87989528 87989748 -54281696 - AluY SINE Alu -79 232 1 596 189 9 9 chr9 87989748 87989859 -54281585 - MER58 DNA MER1_type -2309 111 1 1757 75 9 0 chr9 87990368 87990596 -54280848 + AluSg/x SINE Alu 73 302 -8 435 152 139 0 chr9 87991797 87991876 -54279568 + 5S rRNA rRNA 1 90 -31 2372 80 3 0 chr9 87992165 87992466 -54278978 + AluSp SINE Alu 1 302 -11 414 269 50 14 chr9 87992602 87992743 -54278701 - MIR SINE MIR -29 233 88 622 257 99 12 chr9 87992841 87993094 -54278350 + L1ME4a LINE L1 5654 5928 -193 558 251 145 34 chr9 87993144 87993379 -54278065 - MIR SINE MIR 0 262 2 1921 145 13 3 chr9 87993422 87993726 -54277718 + AluJb SINE Alu 1 307 -5 196 257 100 14 chr9 87993848 87993918 -54277526 + L3 LINE CR1 1307 1382 -195 259 298 67 39 chr9 87994078 87994182 -54277262 + L3 LINE CR1 1370 1476 -101 1453 103 5 14 chr9 87996002 87996216 -54275228 + AluSg SINE Alu 1 212 -98 929 81 0 16 chr9 87996316 87996440 -54275004 - AluSq/x SINE Alu -190 122 1 1750 135 28 0 chr9 87996515 87996797 -54274647 - AluJo SINE Alu -22 290 1 273 337 17 17 chr9 87997393 87997546 -54273898 + MIR SINE MIR 3 154 -62 204 286 0 0 chr9 87998078 87998134 -54273310 + CT-rich Low_complexity Low_complexity 1 56 0 210 250 73 0 chr9 87998537 87998605 -54272839 - MIR3 SINE MIR -18 190 118 330 223 99 8 chr9 87998759 87998880 -54272564 - MIR3 SINE MIR -67 141 10 2304 96 0 0 chr9 87999390 87999702 -54271742 - AluSx SINE Alu 0 312 1 283 318 24 29 chr9 88000142 88000312 -54271132 + L2 LINE L2 1802 1970 -1344 556 225 256 0 chr9 88000381 88000572 -54270872 + MIR SINE MIR 3 242 -20 185 326 34 11 chr9 88000588 88000677 -54270767 - MIR SINE MIR -102 106 16 243 342 32 21 chr9 88000823 88001013 -54270431 - L2 LINE L2 -894 2420 2229 766 222 0 7 chr9 88002378 88002513 -54268931 + AluJo SINE Alu 2 135 -177 2200 106 0 0 chr9 88002544 88002836 -54268608 + AluSx SINE Alu 1 292 -20 212 274 236 0 chr9 88003126 88003232 -54268212 + L3 LINE CR1 1179 1309 -268 316 296 204 25 chr9 88003390 88003586 -54267858 + L3 LINE CR1 1332 1562 -15 436 103 26 26 chr9 88003607 88003685 -54267759 + Alu SINE Alu 223 300 -11 454 285 84 17 chr9 88003725 88003904 -54267540 - MIR SINE MIR -21 241 51 935 179 121 22 chr9 88004135 88004358 -54267086 - AluJb SINE Alu -66 246 2 732 271 71 11 chr9 88004909 88005178 -54266266 + L1ME LINE L1 5445 5729 -392 2211 91 27 0 chr9 88005182 88005478 -54265966 + AluSx SINE Alu 1 304 -8 207 301 14 0 chr9 88005553 88005626 -54265818 - L2 LINE L2 -931 2383 2310 454 216 35 26 chr9 88006917 88007033 -54264411 - FLAM_C SINE Alu -25 118 2 2112 68 50 0 chr9 88007160 88007439 -54264005 - AluSg SINE Alu -17 293 1 240 330 231 0 chr9 88007447 88007668 -54263776 + L2 LINE L2 3001 3272 0 182 320 62 0 chr9 88007711 88007808 -54263636 + L2 LINE L2 3202 3304 -9 2085 114 10 0 chr9 88007808 88008107 -54263337 + AluSx SINE Alu 1 302 -10 505 346 63 13 chr9 88009563 88009800 -54261644 - L2 LINE L2 -20 3252 3004 307 331 48 16 chr9 88012931 88013055 -54258389 + L2 LINE L2 3186 3313 0 655 281 167 88 chr9 88013116 88013829 -54257615 - L3 LINE CR1 -3 1574 806 293 305 40 75 chr9 88013838 88014038 -54257406 - MIR SINE MIR -8 254 62 237 346 0 0 chr9 88014129 88014210 -54257234 - MIR SINE MIR -18 244 164 356 299 0 35 chr9 88015438 88015582 -54255862 + G-rich Low_complexity Low_complexity 1 139 0 189 147 0 0 chr9 88015892 88015926 -54255518 + (TGGGGG)n Simple_repeat Simple_repeat 5 38 0 469 326 56 78 chr9 88016829 88016937 -54254507 - L2 LINE L2 0 3272 3163 1995 138 3 0 chr9 88016937 88017235 -54254209 + AluSx SINE Alu 3 301 -11 469 326 56 78 chr9 88017235 88017494 -54253950 - L2 LINE L2 -109 3163 2900 2321 62 0 3 chr9 88017494 88017782 -54253662 + AluY SINE Alu 1 287 -24 469 326 56 78 chr9 88017782 88017901 -54253543 - L2 LINE L2 -372 2900 2780 1792 156 3 0 chr9 88017901 88018190 -54253254 + AluJo SINE Alu 1 290 -22 469 326 56 78 chr9 88018190 88018442 -54253002 - L2 LINE L2 -492 2780 2554 1052 271 127 17 chr9 88019106 88019460 -54251984 + LTR33 LTR ERVL 15 407 -114 297 0 0 0 chr9 88019856 88019889 -54251555 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 494 327 9 86 chr9 88019893 88020208 -54251236 - L2 LINE L2 -8 3264 2974 2282 97 0 22 chr9 88020707 88021026 -54250418 + AluSx SINE Alu 1 312 0 21 0 0 0 chr9 88022553 88022574 -54248870 + GC_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr9 88025173 88025201 -54246243 + (CA)n Simple_repeat Simple_repeat 2 29 0 180 179 0 0 chr9 88025775 88025814 -54245630 + (CAGCC)n Simple_repeat Simple_repeat 3 41 0 1026 135 49 43 chr9 88026860 88027045 -54244399 + MER20 DNA MER1_type 34 219 0 2231 78 0 0 chr9 88027200 88027482 -54243962 + AluSq SINE Alu 1 282 -31 204 269 108 54 chr9 88028393 88028486 -54242958 - MIR3 SINE MIR -14 194 97 409 308 97 15 chr9 88028994 88029189 -54242255 - MIR SINE MIR -18 244 34 2254 92 7 0 chr9 88031251 88031554 -54239890 + AluSc SINE Alu 1 305 -4 540 304 34 71 chr9 88031741 88032007 -54239437 - L2 LINE L2 -35 3237 2982 534 282 40 93 chr9 88032732 88033278 -54238166 + L2 LINE L2 1932 2448 -866 310 307 198 4 chr9 88033386 88033836 -54237608 - L2 LINE L2 -1092 2222 1686 1393 85 21 0 chr9 88035090 88035279 -54236165 + AluSp SINE Alu 108 300 -13 222 333 147 11 chr9 88035509 88035686 -54235758 + MIR SINE MIR 46 246 -16 457 306 0 8 chr9 88035962 88036086 -54235358 + L2 LINE L2 3190 3312 -1 736 275 64 4 chr9 88036516 88036749 -54234695 - MIR SINE MIR -12 250 4 474 308 101 19 chr9 88037585 88037893 -54233551 - L2 LINE L2 -1114 2200 1868 255 211 22 56 chr9 88038558 88038648 -54232796 + GA-rich Low_complexity Low_complexity 3 89 0 267 79 0 0 chr9 88038957 88038995 -54232449 + (GA)n Simple_repeat Simple_repeat 2 39 0 2429 99 0 0 chr9 88040692 88040994 -54230450 + AluSc SINE Alu 1 302 -7 2273 94 11 0 chr9 88041000 88041286 -54230158 + AluSq SINE Alu 1 289 -24 735 233 81 5 chr9 88041440 88041650 -54229794 - MIR SINE MIR -3 259 34 219 69 0 0 chr9 88044084 88044113 -54227331 + (CAGG)n Simple_repeat Simple_repeat 4 32 0 287 347 103 31 chr9 88046332 88047062 -54224382 + L2 LINE L2 1128 1909 -1405 429 265 125 29 chr9 88047081 88047217 -54224227 - L2 LINE L2 0 3272 3124 2330 101 0 0 chr9 88047414 88047710 -54223734 - AluSq SINE Alu -17 296 1 336 234 135 21 chr9 88047716 88047857 -54223587 - MIR SINE MIR -104 158 2 444 320 151 13 chr9 88047941 88048397 -54223047 + L2 LINE L2 2239 2757 -557 1508 180 64 0 chr9 88048574 88048857 -54222587 - AluJo SINE Alu -11 301 1 230 333 43 17 chr9 88049237 88049354 -54222090 + L2 LINE L2 3150 3269 -3 2713 82 21 0 chr9 88049389 88049765 -54221679 - L1MA4A LINE L1 -598 5705 5322 3768 100 54 31 chr9 88049767 88050375 -54221069 + L1MA4A LINE L1 5682 6303 0 240 256 26 13 chr9 88050448 88050526 -54220918 - L2 LINE L2 -175 3097 3019 229 272 7 130 chr9 88050896 88051049 -54220395 - L2 LINE L2 -258 3014 2905 1702 141 45 21 chr9 88051049 88051063 -54220381 - AluJb SINE Alu -14 298 286 471 113 0 0 chr9 88051063 88051134 -54220310 + (TTCA)n Simple_repeat Simple_repeat 3 73 0 1702 141 45 21 chr9 88051134 88051410 -54220034 - AluJb SINE Alu -26 286 1 229 272 7 130 chr9 88051410 88051511 -54219933 - L2 LINE L2 -367 2905 2793 236 278 10 10 chr9 88051542 88051639 -54219805 + L2 LINE L2 2199 2295 -1019 288 271 0 68 chr9 88051995 88052113 -54219331 + MIR SINE MIR 153 262 0 210 64 21 43 chr9 88052125 88052172 -54219272 + (TTATA)n Simple_repeat Simple_repeat 1 46 0 286 324 101 37 chr9 88056301 88056549 -54214895 - L2 LINE L2 -50 3222 2951 2278 148 42 5 chr9 88056549 88056935 -54214509 - MER57A LTR ERV1 -3 400 1 286 324 101 37 chr9 88056935 88056982 -54214462 - L2 LINE L2 -321 2951 2908 963 260 14 10 chr9 88057770 88058066 -54213378 + AluSq SINE Alu 1 297 -6 455 222 0 28 chr9 88058268 88058376 -54213068 - L2 LINE L2 0 3313 3209 22 0 0 0 chr9 88058854 88058876 -54212568 + AT_rich Low_complexity Low_complexity 1 22 0 572 275 92 103 chr9 88059063 88059416 -54212028 - MLT1H LTR MaLR -2 547 201 2308 100 3 0 chr9 88059416 88059717 -54211727 - AluSg SINE Alu -8 302 1 572 275 92 103 chr9 88059717 88059916 -54211528 - MLT1H LTR MaLR -348 201 1 403 269 88 51 chr9 88060118 88060412 -54211032 - L1M4 LINE L1 -1445 4701 4397 301 43 43 0 chr9 88060416 88060463 -54210981 + (TTA)n Simple_repeat Simple_repeat 1 49 0 1396 91 0 16 chr9 88060474 88060704 -54210740 + AluSq SINE Alu 1 298 -15 2981 224 105 29 chr9 88060849 88061752 -54209692 - Charlie1a DNA MER1_type -483 972 1 28 29 0 0 chr9 88061752 88061787 -54209657 + AT_rich Low_complexity Low_complexity 1 35 0 950 283 39 61 chr9 88062880 88063389 -54208055 + L1MC2 LINE L1 5397 5894 -1914 1334 178 38 44 chr9 88063937 88064252 -54207192 + L1MC2 LINE L1 6022 6334 -10 2141 128 0 13 chr9 88064817 88065123 -54206321 - AluSc SINE Alu -7 302 1 450 196 227 5 chr9 88065838 88066032 -54205412 - MER5C DNA MER1_type 0 324 88 368 86 0 17 chr9 88066153 88066211 -54205233 + (TC)n Simple_repeat Simple_repeat 1 57 0 232 303 112 22 chr9 88066221 88066310 -54205134 + MLT1K LTR MaLR 215 311 -277 477 279 107 44 chr9 88066356 88066675 -54204769 - L1MC/D LINE L1 -2164 5644 5297 2032 104 10 35 chr9 88066675 88067015 -54204429 - AluSx SINE Alu 0 333 1 477 279 107 44 chr9 88067015 88067060 -54204384 - L1MC/D LINE L1 -2511 5297 5256 436 141 56 0 chr9 88067076 88067147 -54204297 - MLT1A2 LTR MaLR 0 374 300 509 333 6 6 chr9 88067367 88067544 -54203900 + (TG)n Simple_repeat Simple_repeat 1 177 0 1230 136 11 0 chr9 88067601 88067778 -54203666 - AluJo SINE Alu -7 305 127 1094 186 5 25 chr9 88067777 88067976 -54203468 - AluJo SINE Alu -117 195 1 * 1883 146 143 11 chr9 88069098 88069476 -54201968 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr9 88069680 88069703 -54201741 + AT_rich Low_complexity Low_complexity 1 23 0 212 350 0 12 chr9 88069868 88069948 -54201496 - L2 LINE L2 -811 2503 2425 1051 224 41 126 chr9 88069954 88070079 -54201365 - MLT1H1 LTR MaLR -1 554 420 594 256 122 0 chr9 88070079 88070235 -54201209 - MER96 DNA MER1_type 0 175 1 1051 224 41 126 chr9 88070235 88070520 -54200924 - MLT1H1 LTR MaLR -135 420 201 2353 126 19 25 chr9 88070520 88070886 -54200558 + THE1B LTR MaLR 1 364 0 1051 224 41 126 chr9 88070886 88071031 -54200413 - MLT1H1 LTR MaLR -354 201 45 536 280 194 27 chr9 88071115 88071676 -54199768 - L2 LINE L2 -930 2384 1641 437 171 197 0 chr9 88071861 88071978 -54199466 + MER5A DNA MER1_type 1 140 -49 246 81 0 0 chr9 88073318 88073355 -54198089 + (A)n Simple_repeat Simple_repeat 1 37 0 24 67 0 0 chr9 88074008 88074053 -54197391 + GC_rich Low_complexity Low_complexity 1 45 0 28 79 0 0 chr9 88074231 88074294 -54197150 + GC_rich Low_complexity Low_complexity 1 63 0 21 36 0 0 chr9 88074598 88074626 -54196818 + GC_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr9 88074817 88074854 -54196590 + GC_rich Low_complexity Low_complexity 1 37 0 36 0 0 0 chr9 88075033 88075069 -54196375 + GC_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr9 88075534 88075569 -54195875 + GC_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr9 88076624 88076662 -54194782 + AT_rich Low_complexity Low_complexity 1 38 0 462 183 117 0 chr9 88076817 88076937 -54194507 - AluJo SINE Alu -177 135 2 380 324 86 33 chr9 88076941 88077144 -54194300 - L1M4 LINE L1 -2705 3441 3250 2031 137 10 7 chr9 88077144 88077443 -54194001 - AluSx SINE Alu -12 300 1 380 324 86 33 chr9 88077443 88077634 -54193810 - L1M4 LINE L1 -2896 3250 3026 2313 93 27 0 chr9 88078248 88078549 -54192895 + AluSx SINE Alu 1 309 -3 25 0 0 0 chr9 88078750 88078775 -54192669 + AT_rich Low_complexity Low_complexity 1 25 0 2168 128 51 26 chr9 88078865 88079217 -54192227 - THE1B LTR MaLR 0 364 4 6832 120 26 64 chr9 88079525 88080661 -54190783 - L1MA2 LINE L1 -1 6303 5125 2033 136 3 16 chr9 88080661 88080977 -54190467 - AluSx SINE Alu 0 312 1 6832 120 26 64 chr9 88080977 88081211 -54190233 - L1MA2 LINE L1 -1179 5125 4884 1924 153 0 7 chr9 88081211 88081506 -54189938 - AluSx SINE Alu -19 293 1 6832 120 26 64 chr9 88081506 88082181 -54189263 - L1MA2 LINE L1 -1420 4884 4281 650 43 43 0 chr9 88082181 88082274 -54189170 - AluYa5/8 SINE Alu 0 311 215 6832 120 26 64 chr9 88082274 88082564 -54188880 - L1MA2 LINE L1 -2023 4281 3981 1738 181 37 3 chr9 88083492 88083613 -54187831 + AluJo SINE Alu 1 116 -196 234 0 0 0 chr9 88083613 88083639 -54187805 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1738 181 37 3 chr9 88083639 88083815 -54187629 + AluJo SINE Alu 116 308 -4 298 282 0 0 chr9 88084508 88084579 -54186865 - L2 LINE L2 -4 3268 3198 1768 162 0 49 chr9 88084771 88085099 -54186345 + AluJo SINE Alu 1 312 0 2428 141 60 31 chr9 88085449 88085903 -54185541 + MLT1C LTR MaLR 1 467 0 285 109 0 0 chr9 88086081 88086127 -54185317 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 2176 111 7 0 chr9 88086142 88086431 -54185013 - AluSp SINE Alu -22 291 1 391 305 90 23 chr9 88086486 88086663 -54184781 - MER5A DNA MER1_type 0 189 1 1994 163 43 33 chr9 88086733 88087125 -54184319 - MSTD LTR MaLR 0 396 1 224 296 120 19 chr9 88087362 88087470 -54183974 - L2 LINE L2 -18 3254 3136 2051 123 27 0 chr9 88089220 88089345 -54182099 + AluSc SINE Alu 1 121 -188 266 0 29 0 chr9 88089345 88089379 -54182065 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2051 123 27 0 chr9 88089379 88089546 -54181898 + AluSc SINE Alu 121 301 -8 1358 164 35 62 chr9 88089783 88089945 -54181499 + L1MC3 LINE L1 7417 7582 -203 2193 100 0 0 chr9 88089945 88090264 -54181180 + AluY SINE Alu 3 321 0 1358 164 35 62 chr9 88090264 88090362 -54181082 + L1MC3 LINE L1 7582 7668 -117 1582 164 40 36 chr9 88090362 88090666 -54180778 + AluJo SINE Alu 1 305 -7 1358 164 35 62 chr9 88090666 88090774 -54180670 + L1MC3 LINE L1 7668 7777 -8 2228 101 0 29 chr9 88090901 88091207 -54180237 + AluSg SINE Alu 1 297 -13 497 222 94 8 chr9 88091891 88092008 -54179436 - MER5A DNA MER1_type 0 189 63 297 234 96 0 chr9 88092421 88092515 -54178929 + MER5A DNA MER1_type 87 189 0 340 315 202 22 chr9 88092515 88092860 -54178584 + L2 LINE L2 1791 2221 -1093 276 30 0 0 chr9 88092860 88092893 -54178551 + (TC)n Simple_repeat Simple_repeat 1 33 0 340 315 202 22 chr9 88092893 88092953 -54178491 + L2 LINE L2 2221 2269 -1045 804 130 17 0 chr9 88093189 88093304 -54178140 + FLAM_C SINE Alu 2 118 -15 206 91 45 45 chr9 88093310 88093354 -54178090 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 227 392 29 44 chr9 88093872 88094076 -54177368 + L2 LINE L2 2681 2881 -433 196 282 8 16 chr9 88095160 88095284 -54176160 + CT-rich Low_complexity Low_complexity 2 124 0 699 255 37 16 chr9 88095364 88095552 -54175892 - MIR SINE MIR -55 207 16 421 245 14 63 chr9 88095637 88095780 -54175664 - MIR SINE MIR -65 197 62 3723 211 52 19 chr9 88095877 88097722 -54173722 - L1MB7 LINE L1 -8 6674 4766 255 185 0 56 chr9 88097722 88097768 -54173676 + MER2 DNA MER2_type 53 95 -250 299 238 0 0 chr9 88097768 88097831 -54173613 - MER2 DNA MER2_type 0 345 283 1958 244 51 18 chr9 88097929 88098541 -54172903 - L1MB7 LINE L1 -1888 4756 4125 4682 252 45 22 chr9 88098565 88098628 -54172816 - L1MB7 LINE L1 -4833 1709 1649 2392 68 7 3 chr9 88098628 88098923 -54172521 - AluY SINE Alu -15 296 1 4682 252 45 22 chr9 88098923 88100338 -54171106 - L1MB7 LINE L1 -4893 1649 197 671 159 30 0 chr9 88100531 88100663 -54170781 - L1MB7 LINE L1 -6384 158 23 663 156 89 7 chr9 88101161 88101296 -54170148 + MLT1D LTR MaLR 27 172 -333 1640 117 0 0 chr9 88101320 88101543 -54169901 - AluSg/x SINE Alu -16 296 74 536 200 0 0 chr9 88101573 88101658 -54169786 + AluS SINE Alu 1 85 -227 195 42 0 0 chr9 88103112 88103136 -54168308 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 526 302 43 31 chr9 88104215 88104473 -54166971 + LTR16C LTR ERVL 198 458 -33 583 256 43 19 chr9 88104971 88105178 -54166266 + LTR16C LTR ERVL 280 491 0 704 153 113 0 chr9 88105662 88105786 -54165658 - AluJo SINE Alu -174 138 1 315 190 0 0 chr9 88106359 88106417 -54165027 - MLT1E3 LTR MaLR -8 616 559 1224 190 114 100 chr9 88106611 88107149 -54164295 - MLT1E3 LTR MaLR -68 556 10 2105 117 7 0 chr9 88107824 88108114 -54163330 + AluSg SINE Alu 1 292 -18 2051 211 27 21 chr9 88108309 88108829 -54162615 + MER74A LTR ERVL 1 523 -35 4288 79 0 0 chr9 88109161 88109715 -54161729 + MER41A LTR ERV1 1 554 0 1055 196 67 124 chr9 88109868 88110255 -54161189 + MLT1A1 LTR MaLR 1 365 0 50 31 0 0 chr9 88110647 88110711 -54160733 + AT_rich Low_complexity Low_complexity 1 64 0 258 57 57 0 chr9 88110718 88110771 -54160673 + (TA)n Simple_repeat Simple_repeat 1 56 0 479 252 44 37 chr9 88111567 88111702 -54159742 + L2 LINE L2 3136 3271 -1 254 265 34 48 chr9 88113241 88113388 -54158056 + L1MB7 LINE L1 5592 5736 -385 8512 41 3 0 chr9 88113616 88114672 -54156772 - MER11C LTR ERVK -12 1059 1 2133 117 0 0 chr9 88114755 88115078 -54156366 + AluSx SINE Alu 1 323 0 503 243 59 0 chr9 88115262 88115414 -54156030 + L1MB7 LINE L1 5886 6046 -138 183 293 0 0 chr9 88118411 88118517 -54152927 + (TA)n Simple_repeat Simple_repeat 2 107 0 853 145 0 0 chr9 88120116 88120247 -54151197 + FLAM_C SINE Alu 3 133 0 288 260 183 0 chr9 88120537 88120641 -54150803 - FLAM_C SINE Alu 0 133 11 21 0 0 0 chr9 88120650 88120671 -54150773 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr9 88122902 88122932 -54148512 + (CA)n Simple_repeat Simple_repeat 1 30 0 221 258 0 11 chr9 88122932 88123021 -54148423 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 495 304 62 45 chr9 88123414 88123570 -54147874 + MIR SINE MIR 34 197 -65 1032 171 100 100 chr9 88123570 88123910 -54147534 - MER2 DNA MER2_type -2 342 3 495 304 62 45 chr9 88123910 88123977 -54147467 + MIR SINE MIR 197 261 -1 734 184 11 25 chr9 88124936 88125211 -54146233 + L1MA4A LINE L1 5932 6263 -40 2373 266 40 9 chr9 88126315 88127087 -54144357 + L1MEc LINE L1 87 882 -5514 549 289 35 35 chr9 88127086 88127453 -54143991 + L1MEc LINE L1 1091 1457 -4939 * 1846 209 55 58 chr9 88127481 88128331 -54143113 + L1MEc LINE L1 1540 2428 -3968 1191 241 15 3 chr9 88128362 88128702 -54142742 + L1MEc LINE L1 2570 2913 -3302 300 308 223 0 chr9 88128873 88129165 -54142279 + L1MEc LINE L1 3569 3925 -2290 * 809 225 55 0 chr9 88129160 88129378 -54142066 + L1ME1 LINE L1 5932 6161 -5 23 68 0 0 chr9 88129382 88129426 -54142018 + AT_rich Low_complexity Low_complexity 1 44 0 480 228 36 24 chr9 88129426 88129593 -54141851 + L1MEc LINE L1 3955 4123 -2092 443 266 88 61 chr9 88129629 88129755 -54141689 + L1MEc LINE L1 4190 4311 -1904 2366 87 0 7 chr9 88129755 88130064 -54141380 + AluSq SINE Alu 1 307 -6 443 266 88 61 chr9 88130064 88130576 -54140868 + L1MEc LINE L1 4311 4845 -1370 256 263 0 13 chr9 88130753 88130829 -54140615 + L1MEc LINE L1 4924 4998 -1217 1017 268 13 0 chr9 88131145 88131380 -54140064 + MIR SINE MIR 24 261 -1 728 218 6 42 chr9 88131901 88132066 -54139378 + MER5B DNA MER1_type 15 173 -5 2242 122 0 0 chr9 88132820 88133123 -54138321 + AluSq SINE Alu 1 303 -10 182 310 0 35 chr9 88133222 88133280 -54138164 + MIR3 SINE MIR 130 185 -23 296 293 0 12 chr9 88133368 88133450 -54137994 + MIR SINE MIR 88 168 -94 506 344 36 13 chr9 88133470 88133694 -54137750 + MIR SINE MIR 21 249 -13 2544 193 59 33 chr9 88135660 88136533 -54134911 - L1MB1 LINE L1 -226 5963 5069 309 238 163 25 chr9 88136629 88136789 -54134655 + HAL1 LINE L1 2321 2502 -5 832 94 39 0 chr9 88136943 88137070 -54134374 + MER30 DNA MER1_type 1 132 -98 2047 121 7 7 chr9 88137330 88137627 -54133817 - AluSx SINE Alu -15 297 1 259 323 277 5 chr9 88137643 88137838 -54133606 - MIR SINE MIR -2 260 13 251 281 0 0 chr9 88137867 88137924 -54133520 + MER5B DNA MER1_type 3 59 -119 584 237 104 54 chr9 88138081 88138398 -54133046 - MER96B DNA MER1_type? -6 411 79 267 132 0 0 chr9 88138438 88138476 -54132968 - L1MDa LINE L1 -6474 66 29 1909 149 7 17 chr9 88138599 88138919 -54132525 + AluSx SINE Alu 1 317 0 2560 170 34 2 chr9 88139236 88139731 -54131713 - L1MB5 LINE L1 -9 6165 5655 1980 163 38 13 chr9 88139725 88140314 -54131130 + L1MB5 LINE L1 5102 5713 -534 463 371 30 15 chr9 88140348 88140550 -54130894 - L2 LINE L2 -680 2634 2430 362 375 16 11 chr9 88140563 88140747 -54130697 - L2 LINE L2 -253 3060 2876 23 33 0 0 chr9 88141177 88141207 -54130237 + AT_rich Low_complexity Low_complexity 1 30 0 442 365 99 4 chr9 88142036 88142269 -54129175 + MIR SINE MIR 6 260 -2 1698 165 109 0 chr9 88142360 88142663 -54128781 - MER2 DNA MER2_type -9 336 1 388 306 53 46 chr9 88143154 88143564 -54127880 - MLT1L LTR MaLR -161 454 8 190 336 39 19 chr9 88143564 88143668 -54127776 - MIR SINE MIR -106 156 51 401 248 97 18 chr9 88143865 88143978 -54127466 - MIR SINE MIR -66 142 21 237 332 139 11 chr9 88144607 88144794 -54126650 + MIR SINE MIR 31 241 -21 222 37 0 0 chr9 88145466 88145493 -54125951 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1387 207 65 59 chr9 88147218 88147662 -54123782 - MLT1D LTR MaLR -4 501 55 1687 208 146 23 chr9 88149134 88149606 -54121838 + MLT1E2 LTR MaLR 94 623 -3 189 298 15 69 chr9 88152016 88152147 -54119297 - MIR SINE MIR -11 251 128 208 286 64 53 chr9 88152578 88152749 -54118695 + L2 LINE L2 2689 2861 -453 230 179 71 54 chr9 88153182 88153238 -54118206 + MIR3 SINE MIR 113 169 -39 25 0 0 0 chr9 88157370 88157395 -54114049 + AT_rich Low_complexity Low_complexity 1 25 0 212 230 40 27 chr9 88158872 88158946 -54112498 + CT-rich Low_complexity Low_complexity 2 76 0 2446 74 0 3 chr9 88159476 88159774 -54111670 + AluY SINE Alu 1 297 -14 185 233 0 23 chr9 88160176 88160219 -54111225 + L2 LINE L2 3230 3271 -1 944 273 121 47 chr9 88160308 88160795 -54110649 - LTR33A LTR ERVL 0 523 1 2503 64 0 0 chr9 88161759 88162055 -54109389 + AluY SINE Alu 1 296 -15 2238 103 0 0 chr9 88162083 88162399 -54109045 + AluSg SINE Alu 1 316 0 2586 152 29 12 chr9 88162489 88162910 -54108534 - MSTA LTR MaLR 0 428 1 2533 156 29 10 chr9 88163211 88163627 -54107817 - MSTA LTR MaLR -4 424 1 2216 119 0 0 chr9 88163955 88164250 -54107194 + AluSx SINE Alu 1 295 -17 2153 247 25 32 chr9 88165246 88165800 -54105644 - MLT1G LTR MaLR -40 550 1 542 316 7 0 chr9 88165809 88165961 -54105483 - MIR SINE MIR -108 154 2 639 316 75 35 chr9 88165980 88166356 -54105088 - L2 LINE L2 -3 3310 2920 * 1457 298 125 13 chr9 88166351 88167043 -54104401 - L2 LINE L2 -285 2987 2226 4202 141 15 29 chr9 88167055 88167779 -54103665 + MER50 LTR ERV1 1 714 -20 221 289 104 44 chr9 88168085 88168220 -54103224 - MER5A DNA MER1_type 0 189 47 607 296 67 25 chr9 88168667 88168907 -54102537 + L2 LINE L2 1758 2007 -1307 189 205 26 0 chr9 88170200 88170239 -54101205 + L3 LINE CR1 479 518 -1059 2220 94 0 0 chr9 88170923 88171222 -54100222 - AluY SINE Alu -12 299 1 2942 145 45 6 chr9 88271402 88271933 -53999511 - L1MA9 LINE L1 -463 5849 5298 3601 189 24 12 chr9 88271957 88272402 -53999042 - L1MA9 LINE L1 -824 5322 4861 1968 154 21 24 chr9 88272402 88272778 -53998666 - THE1C LTR MaLR 0 375 1 3601 189 24 12 chr9 88272778 88273164 -53998280 - L1MA9 LINE L1 -1285 4861 4481 987 186 0 0 chr9 88273264 88273436 -53998008 + AluJb SINE Alu 136 307 -5 913 210 37 43 chr9 88273464 88273889 -53997555 - MLT1D LTR MaLR -28 477 1 1783 177 21 6 chr9 88274662 88274995 -53996449 - MLT1A1 LTR MaLR -27 338 1 203 204 74 0 chr9 88275133 88275187 -53996257 - L2 LINE L2 -1 3271 3214 578 324 119 20 chr9 88278412 88278639 -53992805 + L1MC/D LINE L1 4967 5170 -1149 306 73 0 0 chr9 88278639 88278680 -53992764 + (CA)n Simple_repeat Simple_repeat 2 42 0 578 324 119 20 chr9 88278680 88279008 -53992436 + L1MC/D LINE L1 5170 5576 -743 1195 278 128 29 chr9 88279990 88280758 -53990686 + L2 LINE L2 2405 3246 -67 201 94 0 0 chr9 88280774 88280806 -53990638 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2697 84 19 3 chr9 88280818 88281187 -53990257 + THE1C LTR MaLR 1 375 0 1204 196 0 22 chr9 88282352 88282581 -53988863 - MER58A DNA MER1_type 0 224 1 421 252 47 8 chr9 88283023 88283150 -53988294 - MIR SINE MIR -18 244 113 22 0 0 0 chr9 88284885 88284907 -53986537 + AT_rich Low_complexity Low_complexity 1 22 0 1015 299 6 10 chr9 88285082 88285360 -53986084 - LTR16C LTR ERVL 0 491 213 1586 182 112 34 chr9 88285360 88285702 -53985742 + MLT2D LTR ERVL 1 378 -36 249 33 0 0 chr9 88285702 88285732 -53985712 + (CA)n Simple_repeat Simple_repeat 1 30 0 1586 182 112 34 chr9 88285732 88285773 -53985671 + MLT2D LTR ERVL 378 414 0 1015 299 6 10 chr9 88285773 88285808 -53985636 - LTR16C LTR ERVL -278 213 179 181 351 140 9 chr9 88286449 88286563 -53984881 - L2 LINE L2 -1 3312 3184 336 262 166 0 chr9 88286898 88287043 -53984401 + L1MCa LINE L1 1365 1533 -4893 4058 50 11 0 chr9 88287055 88287596 -53983848 + L1P LINE L1 4 550 -5596 295 200 0 0 chr9 88287696 88287756 -53983688 - L1 LINE L1 -1614 4532 4473 * 1674 179 11 19 chr9 88287751 88288115 -53983329 + L1MA9 LINE L1 5912 6272 -40 41 48 0 0 chr9 88288160 88288222 -53983222 + AT_rich Low_complexity Low_complexity 1 62 0 26 0 0 0 chr9 88288354 88288380 -53983064 + AT_rich Low_complexity Low_complexity 1 26 0 936 301 70 10 chr9 88288701 88289087 -53982357 - L2 LINE L2 -531 2783 2375 1969 86 0 0 chr9 88289141 88289426 -53982018 - AluY SINE Alu 0 323 39 205 253 80 73 chr9 88289597 88289747 -53981697 - L2 LINE L2 -951 2363 2213 2328 131 20 3 chr9 88289893 88290251 -53981193 + THE1B LTR MaLR 1 364 0 397 297 79 36 chr9 88290616 88290781 -53980663 - MER5A DNA MER1_type 0 189 18 1849 171 0 10 chr9 88291126 88291425 -53980019 - AluJb SINE Alu -16 296 1 1100 151 11 11 chr9 88292525 88292704 -53978740 - AluJb SINE Alu -29 283 105 37750 34 1 0 chr9 88293257 88298563 -53972881 + L1PA3 LINE L1 715 6155 0 1790 261 107 20 chr9 88298571 88299325 -53972119 + L1MCa LINE L1 1560 2528 -4079 * 4590 187 31 12 chr9 88299303 88300355 -53971089 + L1MB7 LINE L1 5386 6459 -5 21 36 0 0 chr9 88300358 88300386 -53971058 + AT_rich Low_complexity Low_complexity 1 28 0 6567 108 2 0 chr9 88300387 88301538 -53969906 - L1PA16 LINE L1 -10 6156 5002 1479 104 0 28 chr9 88301538 88301746 -53969698 - L1PA14 LINE L1 -2 6159 5955 2014 123 3 0 chr9 88301752 88302044 -53969400 + L1PA14 LINE L1 5620 5912 -249 830 142 0 0 chr9 88302041 88302175 -53969269 - L1PA16 LINE L1 -1132 5014 4881 * 299 218 39 0 chr9 88302192 88302270 -53969174 + L1MCa LINE L1 2496 2576 -4031 306 300 58 92 chr9 88302277 88302415 -53969029 - L2 LINE L2 -461 2853 2725 495 264 110 0 chr9 88302415 88302570 -53968874 + MER96 DNA MER1_type 4 175 0 306 300 58 92 chr9 88302570 88302671 -53968773 - L2 LINE L2 -589 2725 2622 276 194 46 111 chr9 88302713 88302821 -53968623 - L2 LINE L2 -86 3227 3127 21 71 0 0 chr9 88302901 88302943 -53968501 + AT_rich Low_complexity Low_complexity 1 42 0 254 137 0 0 chr9 88303401 88303447 -53967997 - MLT1D LTR MaLR -3 502 419 220 224 86 52 chr9 88304888 88304946 -53966498 - L2 LINE L2 -19 3294 3235 1237 43 0 32 chr9 88306532 88306718 -53964726 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 228 67 0 0 chr9 88306770 88306800 -53964644 + (T)n Simple_repeat Simple_repeat 1 30 0 555 91 40 0 chr9 88307935 88308034 -53963410 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 1890 155 0 10 chr9 88308506 88308803 -53962641 - AluJb SINE Alu -18 294 1 2651 36 3 0 chr9 88309414 88309718 -53961726 - AluY SINE Alu -6 305 1 287 53 0 26 chr9 88310187 88310225 -53961219 - U1 snRNA snRNA -128 37 1 225 0 0 0 chr9 88310704 88310729 -53960715 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7249 38 1 5 chr9 88310729 88311594 -53959850 - L1PA5 LINE L1 -18 6136 5275 3487 153 5 4 chr9 88311939 88312493 -53958951 - L1PA16 LINE L1 0 6166 5612 453 332 25 10 chr9 88312566 88312765 -53958679 + L2 LINE L2 2553 2754 -560 4356 199 39 10 chr9 88313364 88314848 -53956596 - L1MB7 LINE L1 -7 6177 4649 404 242 8 48 chr9 88314860 88314984 -53956460 + MER77 LTR ERV1 66 184 -421 568 278 43 96 chr9 88315027 88315644 -53955800 + MER21B LTR ERV1 141 693 -28 2925 215 40 11 chr9 88315644 88315988 -53955456 - L1MB7 LINE L1 -1486 4660 4327 2673 128 25 46 chr9 88315988 88316377 -53955067 + MSTA LTR MaLR 1 382 -46 2214 116 0 3 chr9 88316377 88316687 -53954757 - AluSx SINE Alu -3 309 1 2673 128 25 46 chr9 88316687 88316734 -53954710 + MSTA LTR MaLR 382 428 0 2925 215 40 11 chr9 88316734 88317087 -53954357 - L1MB7 LINE L1 -1819 4327 3943 378 0 0 0 chr9 88317438 88317480 -53953964 + (CA)n Simple_repeat Simple_repeat 1 42 0 245 251 46 126 chr9 88318841 88319016 -53952428 + MIR SINE MIR 41 201 -61 1171 73 0 7 chr9 88319336 88319519 -53951925 + AluY SINE Alu 134 315 0 417 323 54 40 chr9 88319534 88319757 -53951687 + MIR SINE MIR 21 246 -16 255 31 0 0 chr9 88320862 88320894 -53950550 + (TG)n Simple_repeat Simple_repeat 2 33 0 227 196 20 20 chr9 88321213 88321264 -53950180 + L2 LINE L2 2915 2965 -349 267 261 0 0 chr9 88321521 88321590 -53949854 + GA-rich Low_complexity Low_complexity 4 72 0 952 223 85 8 chr9 88321964 88322269 -53949175 + L1ME1 LINE L1 5800 6164 0 374 260 163 0 chr9 88322469 88322592 -53948852 + MER104 DNA Tc2 4 146 -34 324 175 0 0 chr9 88322751 88322814 -53948630 + A-rich Low_complexity Low_complexity 1 63 0 236 342 60 54 chr9 88324709 88324858 -53946586 - L2 LINE L2 -181 3091 2942 297 0 0 0 chr9 88324914 88324947 -53946497 + (TG)n Simple_repeat Simple_repeat 2 34 0 251 175 186 31 chr9 88325884 88325981 -53945463 - MIR SINE MIR -71 191 80 448 304 37 7 chr9 88326088 88326223 -53945221 + L2 LINE L2 3134 3272 0 187 73 73 0 chr9 88326932 88326973 -53944471 + GA-rich Low_complexity Low_complexity 1 44 0 410 362 65 9 chr9 88327273 88327502 -53943942 - MIR SINE MIR -10 252 11 356 238 19 57 chr9 88327913 88328018 -53943426 + MIR SINE MIR 82 182 -80 2457 136 23 0 chr9 88328078 88328432 -53943012 - THE1B LTR MaLR 0 364 3 290 194 104 0 chr9 88328440 88328507 -53942937 - L2 LINE L2 -3 3310 3237 2298 108 3 0 chr9 88328548 88328853 -53942591 + AluSg SINE Alu 1 306 -4 940 258 163 16 chr9 88329446 88330171 -53941273 + MER45C DNA AcHobo 13 953 0 570 160 8 56 chr9 88330210 88330335 -53941109 - L1MA7 LINE L1 0 6291 6173 224 337 60 0 chr9 88330595 88330678 -53940766 - MIR SINE MIR -115 147 60 200 219 16 31 chr9 88330911 88330975 -53940469 + (TTTAA)n Simple_repeat Simple_repeat 4 66 0 29 28 0 0 chr9 88331093 88331129 -53940315 + AT_rich Low_complexity Low_complexity 1 36 0 249 311 9 19 chr9 88331555 88331661 -53939783 + (TG)n Simple_repeat Simple_repeat 2 106 0 2018 119 14 0 chr9 88331767 88332069 -53939375 + AluJb SINE Alu 1 306 0 648 312 53 33 chr9 88332339 88332676 -53938768 - LTR16C LTR ERVL -59 432 89 494 255 14 28 chr9 88332772 88332917 -53938527 - MIR SINE MIR -107 155 13 2230 118 3 3 chr9 88332990 88333303 -53938141 + AluSq SINE Alu 1 313 0 272 356 80 0 chr9 88334806 88334969 -53936475 - MIR SINE MIR -70 192 17 485 256 0 8 chr9 88335103 88335224 -53936220 + L2 LINE L2 3194 3313 0 5034 100 24 24 chr9 88335311 88336022 -53935422 + L1PA11 LINE L1 5464 6174 0 2555 144 3 3 chr9 88336578 88336940 -53934504 + THE1B LTR MaLR 1 362 -2 567 256 43 18 chr9 88338305 88338469 -53932975 - MLT1K LTR MaLR -2 586 419 384 194 83 125 chr9 88338492 88338636 -53932808 - MER96 DNA MER1_type? -30 145 8 521 234 29 41 chr9 88338854 88339025 -53932419 + MLT1J1 LTR MaLR 1 169 -277 332 250 102 85 chr9 88339069 88339245 -53932199 + MLT1J2 LTR MaLR 261 439 -11 203 246 14 14 chr9 88339579 88339648 -53931796 + CT-rich Low_complexity Low_complexity 5 73 0 23 54 0 0 chr9 88340134 88340171 -53931273 + AT_rich Low_complexity Low_complexity 1 37 0 203 0 37 0 chr9 88340574 88340601 -53930843 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 22 0 0 0 chr9 88342449 88342471 -53928973 + AT_rich Low_complexity Low_complexity 1 22 0 218 288 15 0 chr9 88342766 88342832 -53928612 + GA-rich Low_complexity Low_complexity 3 69 0 1375 182 32 37 chr9 88343055 88343431 -53928013 + MLT1D LTR MaLR 42 505 0 1019 264 184 23 chr9 88343856 88344291 -53927153 + MLT1D LTR MaLR 1 505 0 193 333 20 0 chr9 88345901 88345952 -53925492 - MIR3 SINE MIR -25 183 132 852 154 0 0 chr9 88347304 88347440 -53924004 - AluJb SINE Alu 0 312 177 343 70 0 0 chr9 88348533 88348576 -53922868 - MLT2B3 LTR ERVL 0 554 512 304 153 14 14 chr9 88348579 88348651 -53922793 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 1864 190 175 34 chr9 88348651 88349119 -53922325 - MLT2B3 LTR ERVL -20 534 1 563 326 158 18 chr9 88349485 88349764 -53921680 + L2 LINE L2 2391 2708 -606 2121 178 20 33 chr9 88349831 88350281 -53921163 + L1MB7 LINE L1 5731 6174 -10 496 275 144 6 chr9 88350291 88350423 -53921021 + MER5A DNA MER1_type 6 165 -24 6102 98 51 2 chr9 88350423 88351752 -53919692 - L1PA13 LINE L1 -1 6162 4791 496 275 144 6 chr9 88351752 88351779 -53919665 + MER5A DNA MER1_type 165 187 -2 464 318 104 15 chr9 88351785 88352224 -53919220 + L2 LINE L2 2766 3305 -8 2664 205 10 42 chr9 88353741 88354360 -53917084 - L1MA10 LINE L1 -1 6333 5735 1813 129 54 7 chr9 88354482 88354777 -53916667 - AluSg SINE Alu -1 309 1 300 343 28 0 chr9 88354902 88355010 -53916434 - MIR SINE MIR -76 132 22 594 312 87 19 chr9 88355019 88355388 -53916056 - MLT2F LTR ERVL -267 396 3 2471 69 41 0 chr9 88355732 88356049 -53915395 + L1PA11 LINE L1 5839 6168 -6 211 132 26 0 chr9 88356059 88356097 -53915347 + (TATG)n Simple_repeat Simple_repeat 2 40 0 207 155 71 0 chr9 88356103 88356187 -53915257 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 207 210 0 48 chr9 88356609 88356671 -53914773 + A-rich Low_complexity Low_complexity 2 60 0 304 279 124 19 chr9 88356835 88356996 -53914448 + MIR SINE MIR 20 197 -65 414 226 105 16 chr9 88357309 88357433 -53914011 + LTR37A LTR ERV1 26 160 -266 323 207 0 0 chr9 88357441 88357499 -53913945 + MER82 DNA MER2_type 10 67 -586 1175 130 0 16 chr9 88357544 88357728 -53913716 - AluSg/x SINE Alu -10 302 122 32 75 0 0 chr9 88358154 88358221 -53913223 + AT_rich Low_complexity Low_complexity 1 67 0 2238 77 28 0 chr9 88358440 88358727 -53912717 - AluSg SINE Alu -15 295 1 1339 149 9 20 chr9 88359768 88359836 -53911608 - MSTB1 LTR MaLR 0 432 365 2164 125 3 7 chr9 88359836 88360139 -53911305 + AluSg SINE Alu 1 302 -8 1339 149 9 20 chr9 88360139 88360407 -53911037 - MSTB1 LTR MaLR -67 365 1 2328 87 7 0 chr9 88360794 88361093 -53910351 - AluY SINE Alu -8 303 3 1369 148 48 44 chr9 88361102 88361372 -53910072 - MER33 DNA MER1_type -44 280 10 246 308 65 37 chr9 88362117 88362224 -53909220 + L2 LINE L2 3139 3248 -24 273 222 14 69 chr9 88362378 88362450 -53908994 - L2 LINE L2 -5 3267 3200 318 206 0 0 chr9 88362730 88362803 -53908641 + GA-rich Low_complexity Low_complexity 3 75 0 300 346 18 39 chr9 88363494 88363625 -53907819 + MIR SINE MIR 20 149 -59 186 143 0 0 chr9 88363641 88363676 -53907768 + (GA)n Simple_repeat Simple_repeat 1 35 0 580 208 101 18 chr9 88364718 88364992 -53906452 - LTR16C LTR ERVL -4 487 161 303 28 0 0 chr9 88366244 88366280 -53905164 + (GA)n Simple_repeat Simple_repeat 2 37 0 202 204 222 65 chr9 88367255 88367363 -53904081 - L3 LINE CR1 -12 1565 1441 228 300 67 40 chr9 88367460 88367610 -53903834 + L2 LINE L2 3133 3286 -27 571 283 64 55 chr9 88367974 88368317 -53903127 - MER93a LTR ERV1 -56 346 1 400 322 95 20 chr9 88369462 88369810 -53901634 - MLT1J LTR MaLR -133 378 5 1117 269 69 47 chr9 88369931 88370551 -53900893 - L1M4 LINE L1 -2044 4102 3469 244 254 167 9 chr9 88370593 88370707 -53900737 - L1M4 LINE L1 -3126 3020 2889 241 241 0 0 chr9 88370735 88370793 -53900651 - L1MC4 LINE L1 -1337 6705 6648 1071 182 17 0 chr9 88370817 88370998 -53900446 + MLT1D LTR MaLR 321 504 -1 279 296 69 42 chr9 88370999 88371431 -53900013 - L1M4 LINE L1 -3253 2893 2450 328 336 38 15 chr9 88371919 88372050 -53899394 - MIR SINE MIR -108 154 21 301 253 22 22 chr9 88373591 88373682 -53897762 - MER103 DNA DNA -21 145 55 1318 237 122 43 chr9 88373897 88374365 -53897079 + MLT1D LTR MaLR 1 505 0 263 307 112 17 chr9 88374517 88374696 -53896748 + MIR3 SINE MIR 3 198 -10 1799 121 3 78 chr9 88374736 88375106 -53896338 - AluSx SINE Alu 0 348 2 1907 131 22 29 chr9 88375622 88375934 -53895510 + AluJb SINE Alu 1 310 -2 260 346 45 39 chr9 88376474 88376630 -53894814 + MIR3 SINE MIR 10 166 -42 2347 92 3 0 chr9 88376715 88377007 -53894437 + AluSx SINE Alu 1 293 -19 210 301 140 0 chr9 88377595 88377688 -53893756 - MIR3 SINE MIR -25 183 78 429 250 19 9 chr9 88377946 88378054 -53893390 + MER5A DNA MER1_type 4 112 -77 905 190 0 0 chr9 88378530 88378688 -53892756 + FRAM SINE Alu 1 156 -20 563 250 10 65 chr9 88381150 88381350 -53890094 - L1ME3 LINE L1 0 6162 5974 27 29 0 0 chr9 88381549 88381583 -53889861 + AT_rich Low_complexity Low_complexity 1 34 0 1727 253 38 76 chr9 88381597 88382135 -53889309 + L2 LINE L2 350 858 -2456 2337 86 7 3 chr9 88382135 88382437 -53889007 - AluSq SINE Alu -10 303 1 1727 253 38 76 chr9 88382437 88382583 -53888861 + L2 LINE L2 858 1008 -2306 453 286 42 6 chr9 88382583 88382751 -53888693 + L2 LINE L2 1718 1891 -1423 714 148 0 0 chr9 88382763 88382921 -53888523 - AluSg/x SINE Alu 0 331 174 278 269 39 29 chr9 88382936 88383040 -53888404 + L2 LINE L2 1945 2049 -1265 952 203 0 11 chr9 88383064 88383251 -53888193 - AluJo SINE Alu -1 311 127 1194 249 115 134 chr9 88383251 88384218 -53887226 + L2 LINE L2 2094 3041 -272 741 159 28 28 chr9 88384218 88384363 -53887081 + L1MA8 LINE L1 6146 6290 -1 1194 249 115 134 chr9 88384363 88384631 -53886813 + L2 LINE L2 3041 3313 0 258 282 0 0 chr9 88385520 88385591 -53885853 - L1M LINE L1 -744 5420 5350 557 280 52 61 chr9 88385610 88385953 -53885491 + L2 LINE L2 2941 3280 -33 212 266 25 51 chr9 88385965 88386030 -53885414 + MIR3 SINE MIR 94 156 -52 753 214 39 6 chr9 88386030 88386208 -53885236 + MER5A DNA MER1_type 1 184 -5 451 315 61 5 chr9 88386496 88386693 -53884751 - L1ME LINE L1 -588 5574 5367 632 343 57 4 chr9 88387136 88387384 -53884060 - MIR SINE MIR 0 262 2 196 341 66 22 chr9 88387433 88387524 -53883920 - L2 LINE L2 -183 3089 2995 780 134 39 95 chr9 88387930 88388109 -53883335 + MER30 DNA MER1_type 62 230 0 7047 170 40 13 chr9 88388144 88389259 -53882185 + L1MA4A LINE L1 4005 5176 -1124 2816 16 0 0 chr9 88389259 88389566 -53881878 + AluYa8 SINE Alu 1 307 -3 7047 170 40 13 chr9 88389566 88389997 -53881447 + L1MA4A LINE L1 5176 5594 -706 7214 74 10 2 chr9 88389999 88391211 -53880233 + L1PA8 LINE L1 4950 6168 -4 4329 151 29 4 chr9 88391211 88391634 -53879810 + L1MA4A LINE L1 5570 6020 -283 441 0 0 0 chr9 88391634 88391683 -53879761 + (TG)n Simple_repeat Simple_repeat 2 50 0 4329 151 29 4 chr9 88391683 88391973 -53879471 + L1MA4A LINE L1 6020 6301 -2 2373 178 48 53 chr9 88393093 88393598 -53877846 + MLT1D LTR MaLR 4 505 0 957 204 15 31 chr9 88393972 88394168 -53877276 + MER3 DNA MER1_type 13 205 -4 22 0 0 0 chr9 88394291 88394313 -53877131 + AT_rich Low_complexity Low_complexity 1 22 0 756 249 60 46 chr9 88398422 88398798 -53872646 - LTR16C LTR ERVL -11 480 32 304 335 135 24 chr9 88398856 88399026 -53872418 - L3 LINE CR1 -5 1572 1384 2506 87 0 0 chr9 88399554 88399864 -53871580 + AluSx SINE Alu 1 310 -2 415 332 5 48 chr9 88400427 88400635 -53870809 + Charlie8 DNA MER1_type 2 200 -2217 1047 111 6 17 chr9 88401650 88401831 -53869613 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 424 319 112 58 chr9 88402334 88402594 -53868850 - L2 LINE L2 -31 3241 2968 299 261 40 40 chr9 88402659 88402897 -53868547 + L1MEc LINE L1 1185 1354 -5030 1087 225 24 20 chr9 88402901 88403194 -53868250 + L1ME1 LINE L1 5736 6029 -137 31 82 0 0 chr9 88403502 88403575 -53867869 + AT_rich Low_complexity Low_complexity 1 73 0 369 0 0 0 chr9 88403589 88403630 -53867814 + (CA)n Simple_repeat Simple_repeat 2 42 0 319 307 101 66 chr9 88404483 88404711 -53866733 - L1MC4a LINE L1 -1871 5937 5702 1684 158 20 7 chr9 88406590 88406893 -53864551 + MLT1A1 LTR MaLR 58 364 -1 183 311 16 33 chr9 88408246 88408307 -53863137 + L2 LINE L2 3138 3197 -75 234 0 0 0 chr9 88409830 88409856 -53861588 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1978 137 0 10 chr9 88409858 88410150 -53861294 - AluSx SINE Alu -23 289 1 23 86 0 0 chr9 88410278 88410336 -53861108 + AT_rich Low_complexity Low_complexity 1 58 0 566 254 86 25 chr9 88410556 88410753 -53860691 - MIR SINE MIR -16 246 38 214 233 0 0 chr9 88410947 88411003 -53860441 + (CA)n Simple_repeat Simple_repeat 1 56 0 1047 158 260 8 chr9 88411026 88411291 -53860153 - MLT2F LTR ERVL -60 603 272 812 162 39 13 chr9 88411327 88411481 -53859963 - MLT2F LTR ERVL -505 158 1 215 245 175 89 chr9 88411631 88411888 -53859556 - L2 LINE L2 -168 3104 2826 709 277 125 45 chr9 88412043 88412537 -53858907 + MLT1H1 LTR MaLR 44 549 -6 339 381 70 33 chr9 88412614 88412938 -53858506 - L2 LINE L2 -646 2668 2325 2729 182 8 27 chr9 88412938 88413459 -53857985 + MLT2B2 LTR ERVL 5 515 0 339 381 70 33 chr9 88413459 88413533 -53857911 - L2 LINE L2 -989 2325 2255 274 288 294 0 chr9 88413642 88413805 -53857639 + MIR SINE MIR 44 254 -8 216 336 133 40 chr9 88413978 88414204 -53857240 - L2 LINE L2 -1371 1943 1697 386 279 35 112 chr9 88414915 88415227 -53856217 + L1MC/D LINE L1 35 322 -6218 302 282 83 83 chr9 88415385 88415541 -53855903 + L1MC/D LINE L1 779 934 -5596 1460 241 29 11 chr9 88415598 88416046 -53855398 + L1MC/D LINE L1 908 1363 -5180 770 192 100 13 chr9 88416054 88416283 -53855161 + L1MC/D LINE L1 5691 5939 -2263 641 273 19 9 chr9 88416308 88416524 -53854920 + L1MC/D LINE L1 5994 6211 -1991 2306 106 135 8 chr9 88418406 88418785 -53852659 - MSTA LTR MaLR 0 428 2 304 280 0 0 chr9 88418812 88418905 -53852539 + (TA)n Simple_repeat Simple_repeat 1 93 0 504 308 72 4 chr9 88418919 88419245 -53852199 - L1MC4a LINE L1 -318 5803 5576 833 236 39 0 chr9 88419280 88419458 -53851986 - MIR SINE MIR -62 200 16 1059 229 98 33 chr9 88419490 88419927 -53851517 - Charlie7 DNA MER1_type -105 2507 2033 1381 185 82 46 chr9 88419927 88420208 -53851236 + AluJo SINE Alu 1 291 -21 1059 229 98 33 chr9 88420208 88420259 -53851185 - Charlie7 DNA MER1_type -579 2033 1987 366 283 43 21 chr9 88420314 88420458 -53850986 + MLT1H1 LTR MaLR 34 176 -366 240 108 0 0 chr9 88420462 88420499 -53850945 - MLT2C1 LTR ERVL -7 390 354 1042 158 27 0 chr9 88420500 88420684 -53850760 + MER2 DNA MER2_type 1 189 -156 356 260 162 14 chr9 88420811 88420977 -53850467 + MLT1H LTR MaLR 373 567 0 439 254 51 35 chr9 88420984 88421181 -53850263 - Charlie7 DNA MER1_type -630 1982 1783 4752 88 4 19 chr9 88421205 88421584 -53849860 - L1PB1 LINE L1 -3 6148 5782 328 69 0 35 chr9 88421584 88421642 -53849802 + (TA)n Simple_repeat Simple_repeat 2 57 0 4752 88 4 19 chr9 88421642 88421957 -53849487 - L1PB1 LINE L1 -369 5782 5464 530 91 23 0 chr9 88421958 88422046 -53849398 + L1P LINE L1 5338 5427 -724 421 200 36 9 chr9 88422054 88422164 -53849280 - Charlie7 DNA MER1_type -841 1771 1659 2800 209 90 25 chr9 88422195 88422985 -53848459 - L1MC4 LINE L1 -34 8008 7168 232 275 12 0 chr9 88423012 88423092 -53848352 - Charlie7 DNA MER1_type -980 1632 1552 1844 265 71 38 chr9 88423094 88423794 -53847650 - Charlie7 DNA MER1_type -1364 1248 496 2936 197 76 7 chr9 88423794 88424402 -53847042 + MER82 DNA MER2_type 2 651 -2 1844 265 71 38 chr9 88424402 88424829 -53846615 - Charlie7 DNA MER1_type -2116 496 84 5051 257 70 23 chr9 88424934 88426905 -53844539 + L1MEc LINE L1 55 2117 -4279 2359 84 0 0 chr9 88426971 88427268 -53844176 - AluY SINE Alu -14 297 1 1229 219 84 14 chr9 88427435 88427732 -53843712 - MER74B LTR ERVL -250 372 55 2341 236 69 33 chr9 88427732 88427930 -53843514 + L1MEc LINE L1 2115 2304 -3911 2555 56 0 0 chr9 88427930 88428233 -53843211 + AluY SINE Alu 1 303 -8 2341 236 69 33 chr9 88428233 88429136 -53842308 + L1MEc LINE L1 2304 3226 -2989 1728 235 129 12 chr9 88429108 88429777 -53841667 + L1MEc LINE L1 3732 4478 -1737 * 695 222 0 0 chr9 88429781 88429898 -53841546 + FLAM_A SINE Alu 1 117 -16 383 190 9 26 chr9 88429899 88430015 -53841429 + (TA)n Simple_repeat Simple_repeat 1 114 0 488 319 24 0 chr9 88430251 88430420 -53841024 - MIR SINE MIR 0 262 90 2652 163 18 0 chr9 88430450 88430897 -53840547 - MSTB2 LTR MaLR -2 455 1 319 230 133 0 chr9 88432001 88432114 -53839330 - L1ME4a LINE L1 -44 6077 5950 233 163 23 0 chr9 88432214 88432257 -53839187 + MLT1B LTR MaLR 1 44 -346 1968 171 97 5 chr9 88432797 88433189 -53838255 + MSTA LTR MaLR 1 428 0 220 167 42 0 chr9 88433396 88433444 -53838000 + GA-rich Low_complexity Low_complexity 1 50 0 1156 206 52 35 chr9 88433527 88433813 -53837631 - MLT1A2 LTR MaLR -37 337 47 2320 116 0 0 chr9 88435533 88435844 -53835600 - AluSx SINE Alu -1 311 1 268 128 64 0 chr9 88436123 88436201 -53835243 + (CA)n Simple_repeat Simple_repeat 2 84 0 1114 160 0 76 chr9 88437573 88437811 -53833633 + L1MB2 LINE L1 5425 5644 -539 723 191 23 35 chr9 88437811 88438013 -53833431 + MER6 DNA MER2_type -65 865 0 1664 165 3 0 chr9 88438013 88438310 -53833134 + L1MB2 LINE L1 5643 5940 -231 500 189 24 2 chr9 88438326 88438456 -53832988 - L1MB3 LINE L1 -251 5913 5783 322 165 25 0 chr9 88438477 88438556 -53832888 + (TA)n Simple_repeat Simple_repeat 1 81 0 571 243 18 0 chr9 88439079 88439248 -53832196 + L1MD3 LINE L1 7824 7995 0 231 197 14 28 chr9 88439320 88439391 -53832053 + L1ME3A LINE L1 1465 1534 -5325 280 255 163 44 chr9 88439421 88439733 -53831711 + L1ME3A LINE L1 1616 2014 -4887 673 272 133 7 chr9 88439764 88440065 -53831379 + L1ME3A LINE L1 6188 6526 -455 1024 227 84 16 chr9 88440159 88440480 -53830964 + MER2 DNA MER2_type 1 343 -1 582 216 15 8 chr9 88440550 88440684 -53830760 + L1ME3A LINE L1 6842 6976 -5 21 36 0 0 chr9 88440996 88441024 -53830420 + AT_rich Low_complexity Low_complexity 1 28 0 655 265 61 59 chr9 88441024 88441481 -53829963 - HAL1 LINE L1 -5 2502 2045 318 294 76 25 chr9 88441560 88441679 -53829765 - HAL1 LINE L1 -2123 384 260 236 143 57 0 chr9 88442584 88442654 -53828790 + (TATG)n Simple_repeat Simple_repeat 4 77 0 1619 198 67 15 chr9 88443373 88443819 -53827625 + MLT2B1 LTR ERVL 1 514 -1 1102 205 64 58 chr9 88443821 88444352 -53827092 - L1MC5 LINE L1 -102 7859 7326 698 237 17 23 chr9 88445317 88445494 -53825950 + MER5B DNA MER1_type 1 176 -2 2231 110 0 3 chr9 88446275 88446576 -53824868 + AluY SINE Alu 1 300 -11 2184 113 7 3 chr9 88446709 88447011 -53824433 + AluSp SINE Alu 3 305 -8 2324 100 0 0 chr9 88447750 88448049 -53823395 + AluSq SINE Alu 4 302 -11 321 301 77 27 chr9 88448075 88448258 -53823186 - L1M4 LINE L1 -724 5450 5259 219 250 68 106 chr9 88448264 88448396 -53823048 - MIR SINE MIR -63 145 19 713 345 44 51 chr9 88448492 88448957 -53822487 - L2 LINE L2 -10 3262 2797 257 227 0 15 chr9 88449563 88449629 -53821815 + GA-rich Low_complexity Low_complexity 2 66 0 438 280 118 69 chr9 88449726 88450072 -53821372 + MLT1I LTR MaLR 47 409 0 199 338 0 27 chr9 88451612 88451686 -53819758 - L2 LINE L2 -8 3305 3234 1153 211 24 108 chr9 88451996 88452450 -53818994 - LTR37B LTR ERV1 0 468 53 497 324 22 22 chr9 88452509 88452694 -53818750 + MIR SINE MIR 50 234 -28 227 367 55 35 chr9 88453194 88453393 -53818051 - L2 LINE L2 -923 2391 2189 790 309 96 18 chr9 88453825 88454275 -53817169 - LTR16C LTR ERVL 0 491 7 201 217 0 100 chr9 88454275 88454335 -53817109 + MIR SINE MIR 21 74 -188 194 273 45 0 chr9 88454464 88454508 -53816936 - L2 LINE L2 -17 3255 3210 530 309 12 6 chr9 88455049 88455214 -53816230 + LTR33 LTR ERVL 354 519 -2 366 292 43 31 chr9 88455412 88455573 -53815871 - L2 LINE L2 -20 3293 3131 1544 174 45 21 chr9 88456736 88457069 -53814375 - Charlie1 DNA MER1_type -4 2757 2417 2203 139 3 9 chr9 88457279 88457618 -53813826 + L1PB1 LINE L1 5812 6148 -3 2413 95 0 0 chr9 88458882 88459186 -53812258 + AluSx SINE Alu 1 304 -8 374 346 117 33 chr9 88459616 88460220 -53811224 + L2 LINE L2 2657 3313 0 226 167 0 0 chr9 88462413 88462455 -53808989 - L1ME LINE L1 -313 5808 5767 * 358 205 70 124 chr9 88462448 88462633 -53808811 + L1ME4a LINE L1 5836 6010 -111 290 217 18 0 chr9 88463125 88463188 -53808256 + MIR SINE MIR 89 146 -62 189 147 0 0 chr9 88463693 88463727 -53807717 + (TATG)n Simple_repeat Simple_repeat 1 34 0 326 261 126 69 chr9 88463984 88464302 -53807142 + L1ME4a LINE L1 5684 6019 -102 2351 4 0 0 chr9 88464317 88464599 -53806845 - AluYa5 SINE Alu 0 315 34 567 164 168 53 chr9 88466392 88466672 -53804772 + MLT1C LTR MaLR 6 360 -30 2905 20 23 26 chr9 88466709 88467052 -53804392 - L1PA4 LINE L1 0 6155 5814 5927 31 0 0 chr9 88467052 88467697 -53803747 - L1PA4 LINE L1 0 6155 5505 422 278 142 53 chr9 88468467 88468748 -53802696 + L1MEd LINE L1 38 343 -5776 746 50 0 10 chr9 88469802 88469902 -53801542 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 476 293 53 0 chr9 88470127 88470277 -53801167 + MIR SINE MIR 47 204 -58 362 284 147 17 chr9 88470796 88470912 -53800532 - MIR SINE MIR -62 146 16 2201 126 3 0 chr9 88471038 88471347 -53800097 + AluSg SINE Alu 1 310 0 3735 190 41 45 chr9 88471412 88472196 -53799248 + LTR39 LTR ERV1 3 783 0 733 302 79 23 chr9 88473595 88473986 -53797458 + LTR33 LTR ERVL 107 519 -2 234 325 148 12 chr9 88474217 88474386 -53797058 - MIR SINE MIR -7 255 64 211 311 94 19 chr9 88474718 88474824 -53796620 - MER5A DNA MER1_type -70 119 6 184 296 141 14 chr9 88475249 88475320 -53796124 - L2 LINE L2 -18 3295 3216 1370 178 60 0 chr9 88475321 88475590 -53795854 + L1MB3 LINE L1 5899 6183 0 1367 126 60 0 chr9 88476697 88476896 -53794548 - L1PA15 LINE L1 -9 6156 5946 2129 188 61 42 chr9 88477802 88478041 -53793403 - MLT1C LTR MaLR 0 467 234 1673 173 0 0 chr9 88478041 88478312 -53793132 + AluJb SINE Alu 6 276 -36 2129 188 61 42 chr9 88478312 88478530 -53792914 - MLT1C LTR MaLR -233 234 1 1548 262 43 35 chr9 88478958 88479469 -53791975 + MER20B DNA MER1_type 268 782 -1 180 334 192 35 chr9 88479486 88479803 -53791641 - L2 LINE L2 -702 2612 2246 2085 142 0 22 chr9 88481232 88481550 -53789894 + AluSq SINE Alu 3 313 0 323 247 155 0 chr9 88482023 88482120 -53789324 + MIR3 SINE MIR 81 192 -16 2440 181 31 5 chr9 88482438 88482853 -53788591 - MSTB LTR MaLR 0 426 1 862 295 94 48 chr9 88483347 88483977 -53787467 - L1MC4a LINE L1 -308 5813 5265 1882 161 27 18 chr9 88484157 88484492 -53786952 + MER44D DNA MER2_type 1 608 -1 557 274 45 20 chr9 88484627 88484872 -53786572 + L1M4 LINE L1 2254 2504 -3642 2632 118 46 24 chr9 88484872 88485288 -53786156 + MSTA LTR MaLR 4 428 0 667 207 88 53 chr9 88487901 88488109 -53783335 - MER106A DNA MER1_type -1 235 17 2823 150 17 5 chr9 88488109 88488530 -53782914 + MSTB LTR MaLR 1 426 0 667 207 88 53 chr9 88488530 88488548 -53782896 - MER106A DNA MER1_type -219 17 1 1870 134 32 0 chr9 88489306 88489467 -53781977 - AluSp SINE Alu -21 292 117 222 37 0 0 chr9 88489467 88489494 -53781950 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1870 134 32 0 chr9 88489494 88489615 -53781829 - AluSp SINE Alu -196 117 1 280 350 103 16 chr9 88489685 88490054 -53781390 + L2 LINE L2 2024 2424 -890 1169 114 10 45 chr9 88491022 88491223 -53780221 + AluSg/x SINE Alu 118 311 -1 366 23 0 0 chr9 88491530 88491573 -53779871 + (TG)n Simple_repeat Simple_repeat 2 44 0 2498 71 3 0 chr9 88492615 88492912 -53778532 - AluSx SINE Alu -9 303 6 2241 128 0 0 chr9 88493409 88493721 -53777723 + AluSx SINE Alu 1 312 0 23 0 0 0 chr9 88493900 88493923 -53777521 + AT_rich Low_complexity Low_complexity 1 23 0 1208 252 44 25 chr9 88494092 88494460 -53776984 + L1MB7 LINE L1 5839 6153 -31 487 204 33 40 chr9 88494758 88494910 -53776534 - L1MC4 LINE L1 0 8042 7892 383 315 39 3 chr9 88496442 88496644 -53774800 + MIR SINE MIR 2 262 0 240 363 59 34 chr9 88496808 88496955 -53774489 + L2 LINE L2 2638 2795 -519 2256 116 0 0 chr9 88496955 88497258 -53774186 + AluSx SINE Alu 3 305 -7 240 363 59 34 chr9 88497258 88497347 -53774097 + L2 LINE L2 2795 2880 -434 461 133 27 0 chr9 88497568 88497643 -53773801 - AluSc SINE Alu -75 234 158 1787 93 0 0 chr9 88497937 88498174 -53773270 + AluY SINE Alu 73 309 -2 243 232 0 0 chr9 88498177 88498256 -53773188 - L1MEd LINE L1 -3952 2898 2820 501 244 161 54 chr9 88498397 88498602 -53772842 + MLT1I LTR MaLR 183 409 0 2154 234 44 21 chr9 88499083 88499740 -53771704 - L1M4 LINE L1 -2164 3982 3311 247 263 26 109 chr9 88500012 88500168 -53771276 - L1MEd LINE L1 -5957 881 739 293 341 114 0 chr9 88500302 88500434 -53771010 + L1ME LINE L1 5608 5754 -416 192 40 0 0 chr9 88500857 88500882 -53770562 + (TC)n Simple_repeat Simple_repeat 1 25 0 262 250 16 0 chr9 88502512 88502576 -53768868 + MLT1J1 LTR MaLR 378 442 -4 2327 102 3 0 chr9 88502779 88503083 -53768361 + AluSp SINE Alu 1 305 -8 290 294 22 11 chr9 88503275 88503367 -53768077 + MLT1L LTR MaLR 442 534 -81 258 231 165 22 chr9 88503371 88503462 -53767982 + MER112 DNA MER1_type 149 252 -8 24 0 0 0 chr9 88504056 88504080 -53767364 + AT_rich Low_complexity Low_complexity 1 24 0 196 339 31 16 chr9 88504233 88504360 -53767084 + L3 LINE CR1 1145 1273 -304 903 301 94 22 chr9 88504862 88505264 -53766180 - MLT1J2 LTR MaLR -19 431 1 1712 190 0 3 chr9 88506026 88506316 -53765128 - AluJo SINE Alu -23 289 1 2148 139 0 0 chr9 88507461 88507763 -53763681 + AluSx SINE Alu 1 302 -10 1899 148 0 33 chr9 88508216 88508519 -53762925 + AluSx SINE Alu 1 293 -19 341 299 0 0 chr9 88508944 88509021 -53762423 + MIR SINE MIR 31 107 -155 322 230 130 0 chr9 88509098 88509198 -53762246 + MIR SINE MIR 104 216 -46 2333 100 0 7 chr9 88509290 88509599 -53761845 + AluY SINE Alu 1 307 -4 968 261 159 31 chr9 88509610 88509879 -53761565 + MLT1H1 LTR MaLR 17 250 -305 2037 138 47 6 chr9 88509879 88510220 -53761224 - THE1A LTR MaLR 0 355 1 968 261 159 31 chr9 88510220 88510464 -53760980 + MLT1H1 LTR MaLR 250 555 0 320 335 40 20 chr9 88511055 88511207 -53760237 + L2 LINE L2 3117 3271 -1 737 264 24 16 chr9 88511363 88511609 -53759835 - MIR SINE MIR 0 262 15 523 273 23 23 chr9 88513056 88513232 -53758212 + MIR SINE MIR 32 207 -55 453 19 0 0 chr9 88513538 88513592 -53757852 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 608 277 112 69 chr9 88514162 88514351 -53757093 + MLT1K LTR MaLR 112 292 -296 1822 132 0 0 chr9 88514351 88514602 -53756842 - AluSx SINE Alu -41 271 21 608 277 112 69 chr9 88514602 88514860 -53756584 + MLT1K LTR MaLR 292 578 -10 249 279 45 63 chr9 88515448 88515559 -53755885 - L2 LINE L2 -17 3296 3188 189 0 0 0 chr9 88517218 88517239 -53754205 + (A)n Simple_repeat Simple_repeat 1 21 0 272 250 24 0 chr9 88517330 88517414 -53754030 + MIR3 SINE MIR 114 199 -9 3174 136 50 29 chr9 88517979 88518034 -53753410 - L1MA8 LINE L1 -4 6287 6235 1662 166 3 23 chr9 88518034 88518342 -53753102 + AluJb SINE Alu 1 302 -10 3174 136 50 29 chr9 88518342 88518902 -53752542 - L1MA8 LINE L1 -56 6235 5659 5739 62 4 3 chr9 88518902 88519655 -53751789 + L1PA10 LINE L1 5427 6180 0 2090 24 36 0 chr9 88520488 88520735 -53750709 + L1PA4 LINE L1 5900 6155 0 2352 107 0 0 chr9 88521126 88521436 -53750008 - AluSx SINE Alu -2 310 1 2398 94 13 0 chr9 88521445 88521744 -53749700 - AluSg SINE Alu -7 303 1 256 256 25 41 chr9 88522875 88522996 -53748448 + LTR67 LTR ERVL 439 557 0 1057 259 25 47 chr9 88523068 88523206 -53748238 + MLT1I LTR MaLR 100 240 -169 630 311 57 0 chr9 88523206 88523415 -53748029 - MER58A DNA MER1_type 0 224 4 1057 259 25 47 chr9 88523415 88523593 -53747851 + MLT1I LTR MaLR 240 409 0 234 376 16 16 chr9 88523815 88523940 -53747504 + MIR SINE MIR 24 148 -60 2084 110 3 0 chr9 88525276 88525581 -53745863 - AluSx SINE Alu 0 306 1 340 278 77 35 chr9 88525916 88526085 -53745359 - MIR SINE MIR 0 262 87 371 293 7 54 chr9 88527600 88527747 -53743697 + MIR SINE MIR 13 152 -110 328 232 200 0 chr9 88528122 88528217 -53743227 - MER81 DNA DNA 0 114 1 407 85 0 0 chr9 88529343 88529402 -53742042 + L1PA14 LINE L1 5923 5981 -180 287 123 0 77 chr9 88529519 88529584 -53741860 - AluSc SINE Alu 0 299 240 1171 125 0 0 chr9 88529594 88529770 -53741674 + L1PA14 LINE L1 5986 6161 0 2984 197 27 14 chr9 88529778 88530402 -53741042 + L1MB3 LINE L1 5552 6183 0 252 86 0 0 chr9 88530535 88530570 -53740874 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1526 94 172 8 chr9 88530575 88530819 -53740625 - AluSx SINE Alu -28 284 1 205 303 158 14 chr9 88531914 88532211 -53739233 - L2 LINE L2 -41 3272 2933 455 188 0 45 chr9 88532226 88532338 -53739106 + L1MB8 LINE L1 6072 6178 0 2307 101 3 0 chr9 88532710 88533006 -53738438 + AluSx SINE Alu 1 297 -15 2205 188 12 37 chr9 88534999 88535430 -53736014 + MSTB LTR MaLR 1 420 -6 369 229 42 0 chr9 88535487 88535583 -53735861 + MER94 DNA DNA 1 100 -34 1647 217 96 32 chr9 88537792 88538263 -53733181 + MLT1D LTR MaLR 1 501 -4 1738 142 100 4 chr9 88538487 88538768 -53732676 - AluJb SINE Alu -4 308 1 349 225 16 11 chr9 88538896 88538989 -53732455 + MIR SINE MIR 75 167 -62 270 326 0 0 chr9 88539862 88539948 -53731496 + MIR3 SINE MIR 108 193 -15 320 282 81 74 chr9 88540115 88540399 -53731045 + L2 LINE L2 3028 3313 0 498 319 47 74 chr9 88540418 88541052 -53730392 + L2 LINE L2 2646 3272 0 2385 82 7 3 chr9 88541485 88541788 -53729656 - AluY SINE Alu -7 304 1 190 228 158 20 chr9 88542469 88542570 -53728874 + MIR SINE MIR 31 145 -117 281 188 25 38 chr9 88542676 88542756 -53728688 + MIR SINE MIR 81 159 -103 253 258 16 0 chr9 88543717 88543779 -53727665 + L2 LINE L2 3251 3313 0 189 326 0 0 chr9 88543884 88543933 -53727511 - MIR SINE MIR -59 149 101 645 274 109 60 chr9 88544261 88544746 -53726698 - MLT1J LTR MaLR -2 509 1 677 211 0 0 chr9 88544995 88545109 -53726335 + FLAM_A SINE Alu 1 114 -19 1054 156 12 0 chr9 88545684 88545851 -53725593 - FRAM SINE Alu -8 168 1 2184 123 3 0 chr9 88546270 88546570 -53724874 - AluSx SINE Alu -11 301 1 1579 17 0 0 chr9 88547900 88548073 -53723371 - AluYa5 SINE Alu -6 305 133 242 239 0 60 chr9 88548236 88548303 -53723141 - MLT1J2 LTR MaLR -14 436 374 462 222 80 75 chr9 88548352 88548564 -53722880 - MLT1J2 LTR MaLR -237 213 1 1291 146 76 38 chr9 88548586 88548874 -53722570 + L1MB8 LINE L1 5878 6176 -2 232 203 76 0 chr9 88548892 88548971 -53722473 + L1MC3 LINE L1 7701 7785 0 189 355 43 0 chr9 88549131 88549224 -53722220 + MIR SINE MIR 114 210 -52 688 219 24 5 chr9 88549262 88549445 -53721999 + L1M4 LINE L1 5276 5456 -718 * 2789 217 27 27 chr9 88549444 88550140 -53721304 + L1ME2 LINE L1 5351 6046 -118 2133 120 7 0 chr9 88550141 88550441 -53721003 - AluSp SINE Alu -11 302 1 180 117 33 17 chr9 88550451 88550511 -53720933 + (TTATA)n Simple_repeat Simple_repeat 5 65 0 2087 128 0 3 chr9 88551748 88552044 -53719400 + AluSq SINE Alu 5 299 -14 492 280 141 53 chr9 88552336 88552697 -53718747 + L2 LINE L2 788 1180 -2134 2505 68 0 3 chr9 88552767 88553077 -53718367 - AluY SINE Alu -2 309 1 766 180 25 0 chr9 88553105 88553227 -53718217 - FLAM_A SINE Alu -5 128 4 299 308 214 6 chr9 88554524 88554706 -53716738 + MIR SINE MIR 30 249 -13 226 216 0 20 chr9 88554674 88554725 -53716719 + L2 LINE L2 3263 3312 -1 * 2172 106 0 7 chr9 88555854 88556147 -53715297 + AluSq SINE Alu 6 296 -17 4729 145 32 21 chr9 88556186 88557034 -53714410 - L1MA6 LINE L1 -4 6296 5440 579 131 37 28 chr9 88557034 88557141 -53714303 - L1PB1 LINE L1 -41 6110 6003 327 219 0 0 chr9 88557142 88557206 -53714238 - L1M1 LINE L1 -815 5488 5425 * 1608 171 9 5 chr9 88557200 88557530 -53713914 + L1M1 LINE L1 5091 5422 -743 467 292 74 15 chr9 88558752 88558954 -53712490 + MIR SINE MIR 49 262 0 464 246 36 7 chr9 88558975 88559113 -53712331 - Charlie1 DNA MER1_type 0 2761 2620 * 890 137 65 0 chr9 88559108 88559261 -53712183 - Charlie1 DNA MER1_type -2535 226 64 1884 161 6 22 chr9 88559392 88559703 -53711741 - AluSx SINE Alu -6 306 1 4504 171 101 10 chr9 88560192 88561642 -53709802 + L1MB7 LINE L1 4591 6184 0 2161 110 0 16 chr9 88563925 88564234 -53707210 - AluSx SINE Alu -8 304 1 231 61 0 0 chr9 88565027 88565060 -53706384 + (CTTTG)n Simple_repeat Simple_repeat 2 34 0 2338 82 0 0 chr9 88565484 88565808 -53705636 - AluSc SINE Alu 0 324 1 985 228 68 67 chr9 88565906 88566412 -53705032 + MLT1G LTR MaLR 4 590 0 26 0 0 0 chr9 88566463 88566489 -53704955 + AT_rich Low_complexity Low_complexity 1 26 0 265 280 86 32 chr9 88567141 88567234 -53704210 - MIR SINE MIR -145 117 20 2165 144 0 0 chr9 88567310 88567622 -53703822 + AluSx SINE Alu 1 312 0 263 118 44 147 chr9 88567629 88567697 -53703747 - MLT1I LTR MaLR -1 408 348 568 271 37 17 chr9 88567792 88567992 -53703452 - MLT1I LTR MaLR -199 210 2 6157 146 20 31 chr9 88568292 88568546 -53702898 + L1PB2 LINE L1 4128 4383 -1768 2521 78 0 0 chr9 88568546 88568854 -53702590 + AluY SINE Alu 1 308 -3 6157 146 20 31 chr9 88568854 88570581 -53700863 + L1PB2 LINE L1 4383 6095 -56 1614 188 7 16 chr9 88570581 88570885 -53700559 + AluJb SINE Alu 2 302 -10 6157 146 20 31 chr9 88570885 88570941 -53700503 + L1PB2 LINE L1 6095 6150 -1 227 328 0 0 chr9 88571304 88571362 -53700082 + Charlie8 DNA MER1_type 3 60 -2357 1997 130 7 7 chr9 88571398 88571682 -53699762 - AluSx SINE Alu -28 284 1 254 250 16 16 chr9 88571703 88571767 -53699677 + Charlie8 DNA MER1_type 86 149 -2268 23 0 0 0 chr9 88571947 88571970 -53699474 + AT_rich Low_complexity Low_complexity 1 23 0 515 245 109 78 chr9 88572037 88572384 -53699060 + L2 LINE L2 2953 3310 -3 1911 193 93 48 chr9 88572600 88573083 -53698361 + MLT1D LTR MaLR 1 505 0 233 290 123 65 chr9 88573106 88573244 -53698200 - MIR3 SINE MIR -62 146 1 21 0 0 0 chr9 88574496 88574517 -53696927 + AT_rich Low_complexity Low_complexity 1 21 0 262 301 118 11 chr9 88574641 88574734 -53696710 - MIR SINE MIR -76 132 30 2001 199 19 56 chr9 88574850 88575278 -53696166 - MLT2D LTR ERVL -2 412 1 207 0 0 0 chr9 88575565 88575588 -53695856 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 555 173 36 62 chr9 88575588 88575755 -53695689 - MLT1G LTR MaLR -6 584 438 281 209 0 2 chr9 88576026 88576087 -53695357 - MLT1F LTR MaLR -467 75 21 2614 138 57 2 chr9 88576155 88576561 -53694883 - MSTA LTR MaLR 0 428 1 376 233 93 0 chr9 88576988 88577074 -53694370 + MIR SINE MIR 115 208 -54 3782 121 38 0 chr9 88577138 88577642 -53693802 - MER1A DNA MER1_type -4 523 1 2355 119 44 41 chr9 88577942 88578304 -53693140 + THE1B LTR MaLR 1 363 -1 267 221 29 19 chr9 88578311 88578415 -53693029 + (TA)n Simple_repeat Simple_repeat 2 106 0 2253 135 0 0 chr9 88579299 88579611 -53691833 - AluSx SINE Alu 0 312 1 2391 83 7 0 chr9 88580481 88580783 -53690661 - AluSc SINE Alu -5 304 1 186 43 0 0 chr9 88581074 88581097 -53690347 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 620 254 178 19 chr9 88581127 88581340 -53690104 + MIR SINE MIR 6 252 -10 309 68 0 0 chr9 88582160 88582204 -53689240 + (ATG)n Simple_repeat Simple_repeat 3 46 0 751 262 24 19 chr9 88582218 88582428 -53689016 - MIR SINE MIR -1 261 51 2581 228 123 9 chr9 88582581 88582704 -53688740 + L1ME1 LINE L1 5341 5449 -717 2173 123 3 0 chr9 88582704 88582997 -53688447 + AluSx SINE Alu 1 294 -18 2581 228 123 9 chr9 88582997 88583610 -53687834 + L1ME1 LINE L1 5449 6158 -8 1683 197 3 3 chr9 88583654 88583953 -53687491 + AluJb SINE Alu 1 299 -13 207 139 0 0 chr9 88583953 88583989 -53687455 + (GGA)n Simple_repeat Simple_repeat 1 36 0 536 136 16 43 chr9 88584011 88584195 -53687249 + GA-rich Low_complexity Low_complexity 2 180 0 243 203 0 0 chr9 88584211 88584280 -53687164 + GA-rich Low_complexity Low_complexity 2 70 0 681 269 128 9 chr9 88584295 88584522 -53686922 + MIR SINE MIR 2 255 -7 226 267 22 33 chr9 88585443 88585533 -53685911 + L1ME LINE L1 5614 5702 -468 1105 115 0 0 chr9 88585542 88585713 -53685731 - AluSg/x SINE Alu 0 306 136 2563 65 3 0 chr9 88585715 88586021 -53685423 - AluSp SINE Alu -5 308 2 2203 110 0 13 chr9 88586356 88586657 -53684787 + AluSx SINE Alu 2 298 -14 1218 301 124 17 chr9 88587001 88587525 -53683919 + MLT1G1 LTR MaLR 16 595 0 230 258 108 118 chr9 88588369 88588555 -53682889 + MLT1G1-int LTR MaLR 1028 1211 -160 931 276 108 72 chr9 88588713 88589224 -53682220 + MLT1G1 LTR MaLR 67 595 0 23 0 0 0 chr9 88589464 88589487 -53681957 + AT_rich Low_complexity Low_complexity 1 23 0 1661 164 35 3 chr9 88589982 88590268 -53681176 + AluJb SINE Alu 1 295 -17 249 285 109 42 chr9 88590606 88590771 -53680673 + L2 LINE L2 3121 3296 -17 1812 169 0 124 chr9 88590771 88591167 -53680277 - Tigger3(Golem) DNA MER2_type -2 3027 1 1671 117 5 0 chr9 88591710 88591933 -53679511 + AluSx SINE Alu 1 224 -88 183 80 0 0 chr9 88591933 88591958 -53679486 + (A)n Simple_repeat Simple_repeat 1 25 0 2301 109 0 0 chr9 88592611 88592913 -53678531 + AluSg SINE Alu 2 303 -7 3048 189 22 7 chr9 88595119 88595668 -53675776 - MER41D LTR ERV1 0 557 1 2121 96 38 7 chr9 88596133 88596426 -53675018 - AluSq SINE Alu -11 302 1 2077 111 17 0 chr9 88596721 88597010 -53674434 + AluSc SINE Alu 1 294 -15 633 143 0 0 chr9 88596924 88597015 -53674429 + AluSc SINE Alu 209 299 -10 475 359 15 5 chr9 88597717 88597912 -53673532 - MIR SINE MIR -65 197 1 304 188 82 12 chr9 88598441 88598526 -53672918 + MLT1J1 LTR MaLR 33 123 -323 447 217 2 11 chr9 88598633 88598739 -53672705 + MLT1I LTR MaLR 315 403 -6 3674 88 43 4 chr9 88598789 88599278 -53672166 + L1PA11 LINE L1 5666 6173 -1 968 138 6 0 chr9 88599496 88599663 -53671781 + (GAAA)n Simple_repeat Simple_repeat 4 171 0 784 224 60 69 chr9 88600260 88600492 -53670952 - MER34B LTR ERV1 -335 230 1 482 246 34 67 chr9 88600492 88600641 -53670803 - LTR16A LTR ERVL -296 154 12 1542 174 39 39 chr9 88602121 88602426 -53669018 + AluJo SINE Alu 1 305 -7 288 318 36 9 chr9 88603786 88603896 -53667548 + L2 LINE L2 3158 3270 -2 1033 194 24 0 chr9 88604266 88604431 -53667013 + FAM SINE Alu 2 170 -5 2213 157 41 3 chr9 88604511 88604880 -53666564 - MLT1B LTR MaLR 0 390 8 1576 247 20 9 chr9 88605122 88605525 -53665919 + ERVL LTR ERVL 94 518 -5161 445 214 0 11 chr9 88605570 88605659 -53665785 + MLT1A1 LTR MaLR 1 88 -277 268 189 57 74 chr9 88605709 88605831 -53665613 + L1 LINE L1 5175 5294 -852 * 5052 199 25 14 chr9 88605814 88606531 -53664913 + L1MA9 LINE L1 4273 5009 -1137 2232 86 38 0 chr9 88606531 88606822 -53664622 + AluY SINE Alu 1 302 -9 5052 199 25 14 chr9 88606822 88607202 -53664242 + L1MA9 LINE L1 5009 5383 -763 1676 190 15 110 chr9 88607211 88607253 -53664191 + L1MA9 LINE L1 5788 5832 -480 1772 195 0 3 chr9 88607253 88607566 -53663878 + AluJb SINE Alu 1 312 0 1667 203 7 0 chr9 88607574 88607864 -53663580 + AluJo SINE Alu 3 294 -18 1676 190 15 110 chr9 88607864 88608009 -53663435 + L1MA9 LINE L1 5839 5996 -316 1781 179 0 20 chr9 88608009 88608311 -53663133 + AluJb SINE Alu 1 296 -16 1676 190 15 110 chr9 88608311 88608660 -53662784 + L1MA9 LINE L1 5996 6282 -30 251 139 0 0 chr9 88608734 88608770 -53662674 + MLT1A1 LTR MaLR 223 258 -138 842 259 5 5 chr9 88608773 88608966 -53662478 + MLT1A1 LTR MaLR 173 365 0 1597 253 169 81 chr9 88608980 88609965 -53661479 + MLT1A2-int LTR MaLR 287 1357 -14 1570 224 42 17 chr9 88609985 88610343 -53661101 + MLT1A2 LTR MaLR 4 370 -4 219 284 40 0 chr9 88611401 88611475 -53659969 - L2 LINE L2 0 3313 3237 2080 121 34 7 chr9 88611682 88611980 -53659464 - AluSg SINE Alu -4 306 1 389 210 43 72 chr9 88612492 88612547 -53658897 - L1MA10 LINE L1 -4 6330 6276 2776 256 91 60 chr9 88612547 88613459 -53657985 - L1ME1 LINE L1 -44 6191 5309 2038 110 46 0 chr9 88613459 88613741 -53657703 + AluY SINE Alu 1 295 -16 2776 256 91 60 chr9 88613741 88614248 -53657196 - L1ME1 LINE L1 -926 5309 4819 2108 80 44 7 chr9 88614248 88614577 -53656867 + AluY SINE Alu 1 339 0 2776 256 91 60 chr9 88614577 88615377 -53656067 - L1ME1 LINE L1 -1416 4819 3859 23847 145 23 21 chr9 88615385 88622168 -53649276 + L1MA3 LINE L1 16 6785 -939 2482 72 0 3 chr9 88622168 88622474 -53648970 + AluY SINE Alu 1 305 -6 2320 107 0 0 chr9 88622484 88622783 -53648661 + AluSc SINE Alu 1 299 -10 23847 145 23 21 chr9 88622783 88623677 -53647767 + L1MA3 LINE L1 6793 7724 0 3812 241 62 45 chr9 88623695 88625222 -53646222 - L1ME1 LINE L1 -2348 3867 2315 1668 282 66 16 chr9 88625223 88625769 -53645675 - L1ME1 LINE L1 -5822 574 2 2304 111 0 0 chr9 88625797 88626103 -53645341 - AluSc SINE Alu -3 306 1 2482 74 0 6 chr9 88626110 88626422 -53645022 - AluY SINE Alu -1 310 1 214 186 0 0 chr9 88626648 88626691 -53644753 + T-rich Low_complexity Low_complexity 1 43 0 2221 104 3 0 chr9 88628180 88628469 -53642975 - AluSq SINE Alu -18 295 6 185 264 0 139 chr9 88628797 88628830 -53642614 - L2 LINE L2 -666 2648 2629 1659 172 27 3 chr9 88628830 88629126 -53642318 + AluSx SINE Alu 1 303 -9 185 264 0 139 chr9 88629126 88629164 -53642280 - L2 LINE L2 -685 2629 2587 1858 163 3 14 chr9 88630004 88630139 -53641305 + AluSx SINE Alu 1 136 -176 2123 128 0 7 chr9 88630139 88630425 -53641019 + AluSx SINE Alu 1 286 -26 180 97 0 0 chr9 88630425 88630456 -53640988 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 2123 128 0 7 chr9 88630456 88630473 -53640971 + AluSx SINE Alu 286 302 -10 1858 163 3 14 chr9 88630473 88630631 -53640813 + AluSx SINE Alu 136 291 -21 5841 69 10 0 chr9 88630999 88631683 -53639761 - LTR8 LTR ERV1 0 691 1 219 36 0 0 chr9 88632058 88632086 -53639358 + (CA)n Simple_repeat Simple_repeat 2 29 0 1499 203 26 0 chr9 88632426 88632697 -53638747 + AluJo SINE Alu 1 278 -34 269 250 0 15 chr9 88633353 88633421 -53638023 - LTR67 LTR ERVL -7 550 484 247 355 90 24 chr9 88634267 88634433 -53637011 + L3 LINE CR1 1399 1575 -2 3603 67 0 0 chr9 88634657 88635093 -53636351 - MLT2A1 LTR ERVL -8 436 1 332 217 44 71 chr9 88635690 88635830 -53635614 + L1P4 LINE L1 5700 5836 -325 378 61 0 0 chr9 88636031 88636080 -53635364 + (TC)n Simple_repeat Simple_repeat 1 49 0 2191 121 0 0 chr9 88636180 88636470 -53634974 + AluSx SINE Alu 1 290 -22 2236 86 3 10 chr9 88637241 88637543 -53633901 + AluSq SINE Alu 1 300 -13 604 253 29 40 chr9 88637633 88637807 -53633637 - MER5B DNA MER1_type 0 178 7 648 268 77 5 chr9 88638590 88638784 -53632660 + MIR SINE MIR 53 260 -2 187 211 0 0 chr9 88638803 88638841 -53632603 - L3 LINE CR1 -66 1511 1474 2170 189 86 18 chr9 88639134 88639757 -53631687 - Tigger7 DNA MER2_type 0 2587 1 1611 161 40 26 chr9 88640835 88641209 -53630235 - AluJb SINE Alu 0 382 5 621 218 208 73 chr9 88641248 88641752 -53629692 - MLT1G LTR MaLR 0 590 1 2436 74 0 3 chr9 88641853 88642162 -53629282 + AluY SINE Alu 1 308 -3 219 286 0 18 chr9 88642906 88642962 -53628482 + MIR3 SINE MIR 5 59 -149 1082 191 0 6 chr9 88643534 88643707 -53627737 + FAM SINE Alu 1 172 -3 1845 161 0 43 chr9 88643861 88644185 -53627259 - AluJb SINE Alu -2 310 1 1660 179 33 23 chr9 88644561 88644741 -53626703 - AluJo SINE Alu -2 310 124 261 0 0 0 chr9 88644741 88644770 -53626674 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1660 179 33 23 chr9 88644770 88644896 -53626548 - AluJo SINE Alu -188 124 1 691 200 0 0 chr9 88645097 88645207 -53626237 + FLAM_C SINE Alu 2 111 -32 2159 127 0 10 chr9 88645261 88645575 -53625869 - AluSx SINE Alu -1 311 1 346 257 53 26 chr9 88645786 88645899 -53625545 + MLT1J2 LTR MaLR 15 130 -320 908 123 84 0 chr9 88646380 88646535 -53624909 + Tigger4(Zombi) DNA MER2_type 1 168 -2563 * 2865 116 19 36 chr9 88646533 88647009 -53624435 + Tigger4(Zombi) DNA MER2_type 2264 2731 0 517 270 42 64 chr9 88647429 88647740 -53623704 + L1ME4a LINE L1 5591 5894 -227 27 29 0 0 chr9 88647844 88647878 -53623566 + AT_rich Low_complexity Low_complexity 1 34 0 1570 164 25 0 chr9 88647886 88648124 -53623320 - AluSx SINE Alu -68 244 1 2471 195 13 51 chr9 88649533 88650066 -53621378 + MER89 LTR ERV1 1 513 -46 694 186 45 13 chr9 88650116 88650272 -53621172 + MER5A DNA MER1_type 27 187 -2 990 230 83 50 chr9 88650916 88651195 -53620249 - MER69 DNA AcHobo -82 2444 2145 2151 108 10 0 chr9 88651195 88651483 -53619961 + AluSx SINE Alu 1 291 -21 990 230 83 50 chr9 88651483 88651624 -53619820 - MER69 DNA AcHobo -381 2145 2010 * 1074 272 35 50 chr9 88651622 88651993 -53619451 - MER69 DNA AcHobo -1958 568 202 2017 148 21 9 chr9 88651993 88652332 -53619112 + MER61A LTR ERV1 1 343 0 1074 272 35 50 chr9 88652332 88652364 -53619080 - MER69 DNA AcHobo -2324 202 171 2241 125 0 0 chr9 88653024 88653328 -53618116 - AluSx SINE Alu -8 304 1 2460 62 7 3 chr9 88653337 88653644 -53617800 - AluY SINE Alu -3 308 1 878 198 0 12 chr9 88654310 88654477 -53616967 - AluJb SINE Alu -5 307 143 24 0 0 0 chr9 88654490 88654514 -53616930 + AT_rich Low_complexity Low_complexity 1 24 0 306 271 60 8 chr9 88654517 88654650 -53616794 - L1ME4a LINE L1 -15 6106 5967 261 0 0 0 chr9 88654841 88654870 -53616574 + (T)n Simple_repeat Simple_repeat 1 29 0 1849 126 92 22 chr9 88654893 88655419 -53616025 - LTR9 LTR ERV1 0 612 1 1722 167 3 27 chr9 88655447 88655747 -53615697 + AluJo SINE Alu 1 293 -19 355 291 20 34 chr9 88655824 88655972 -53615472 - L1ME4a LINE L1 -360 5761 5616 534 31 0 0 chr9 88656239 88656303 -53615141 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 1538 181 10 46 chr9 88656314 88656617 -53614827 - AluJb SINE Alu -20 292 1 2276 84 7 3 chr9 88657195 88657491 -53613953 - AluSp SINE Alu -16 297 1 238 276 48 29 chr9 88657909 88658014 -53613430 + L1M4 LINE L1 4496 4602 -1544 25 0 0 0 chr9 88658330 88658355 -53613089 + AT_rich Low_complexity Low_complexity 1 25 0 1985 140 0 7 chr9 88658636 88658928 -53612516 + AluSx SINE Alu 1 290 -22 2024 137 128 0 chr9 88659800 88660151 -53611293 - MER57A LTR ERV1 0 403 8 2107 94 0 7 chr9 88660434 88660733 -53610711 - AluSc SINE Alu 0 309 21 343 245 73 40 chr9 88661102 88661357 -53610087 - L2 LINE L2 -262 3051 2788 1998 99 0 82 chr9 88661428 88661753 -53609691 + AluSx SINE Alu 5 304 0 182 314 29 20 chr9 88661767 88661869 -53609575 - L2 LINE L2 -1676 1638 1536 2294 118 0 0 chr9 88662078 88662382 -53609062 + AluSc SINE Alu 1 304 -5 1253 198 62 81 chr9 88662386 88662743 -53608701 - LTR10B LTR ERV1 0 597 257 957 309 56 53 chr9 88662869 88662940 -53608504 - L2 LINE L2 -2042 1272 1203 2316 101 0 0 chr9 88662940 88663227 -53608217 + AluSg SINE Alu 1 287 -23 957 309 56 53 chr9 88663227 88663816 -53607628 - L2 LINE L2 -2111 1203 610 1628 186 3 10 chr9 88663867 88664163 -53607281 + AluJb SINE Alu 18 311 -1 388 259 108 0 chr9 88664400 88664566 -53606878 - AluSx SINE Alu -118 184 1 1433 209 73 3 chr9 88664574 88664929 -53606515 - LTR37A LTR ERV1 -14 412 33 183 252 24 126 chr9 88665480 88665499 -53605945 - MIR SINE MIR -147 115 96 2319 114 0 16 chr9 88665499 88665816 -53605628 + AluSx SINE Alu 1 312 0 183 252 24 126 chr9 88665816 88665923 -53605521 - MIR SINE MIR -166 96 2 210 193 0 0 chr9 88666898 88666955 -53604489 + A-rich Low_complexity Low_complexity 1 57 0 279 228 0 0 chr9 88667054 88667111 -53604333 - MER63 DNA MER1_type -320 740 684 770 141 47 7 chr9 88667144 88667293 -53604151 - L1MB7 LINE L1 -51 6133 5979 284 148 93 0 chr9 88667293 88667347 -53604097 - MER63 DNA MER1_type -151 685 1 3198 144 43 43 chr9 88668107 88668713 -53602731 + MER4B LTR ERV1 3 608 -2 2413 79 0 3 chr9 88668749 88669054 -53602390 - AluY SINE Alu -7 304 1 299 238 0 0 chr9 88669075 88669138 -53602306 + MER5A DNA MER1_type 9 71 -118 1064 204 15 5 chr9 88669144 88669345 -53602099 + AluJo SINE Alu 1 203 -109 2080 141 55 27 chr9 88669351 88669755 -53601689 - LTR7 LTR ERV1 0 450 36 1627 114 5 5 chr9 88669755 88670007 -53601437 + AluSp SINE Alu 64 315 0 604 221 0 0 chr9 88670007 88670120 -53601324 + AluJo/FRAM SINE Alu 132 244 -68 1971 162 10 3 chr9 88670401 88670709 -53600735 + AluJb SINE Alu 1 310 -2 420 295 137 22 chr9 88671048 88671263 -53600181 - L1ME LINE L1 -403 5718 5452 2264 96 0 3 chr9 88671263 88671556 -53599888 - AluSq SINE Alu -11 302 11 420 295 137 22 chr9 88671556 88671662 -53599782 - L1ME LINE L1 -669 5452 5360 3630 40 0 11 chr9 88671976 88672429 -53599015 + LTR7 LTR ERV1 1 448 -2 17538 92 15 24 chr9 88672431 88675623 -53595821 + HERVH LTR ERV1 1 2995 -4718 990 120 7 0 chr9 88675602 88675752 -53595692 + HERVH LTR ERV1 3140 3290 -4423 * 3386 121 0 6 chr9 88675742 88676245 -53595199 + HERVH LTR ERV1 3492 3991 -3722 4506 136 1 1 chr9 88676250 88676912 -53594532 + HERVH LTR ERV1 4488 5149 -2564 1439 130 19 0 chr9 88676913 88677129 -53594315 + HERVH LTR ERV1 5600 5819 -1894 * 2567 79 45 13 chr9 88677127 88677507 -53593937 + HERVH LTR ERV1 7322 7713 0 3355 50 0 70 chr9 88677507 88677989 -53593455 + LTR7 LTR ERV1 1 448 -2 2309 119 3 0 chr9 88678555 88678865 -53592579 - AluSp SINE Alu -2 311 1 284 277 44 58 chr9 88679171 88679308 -53592136 + MIR SINE MIR 117 251 -11 896 181 12 18 chr9 88679317 88679483 -53591961 + FAM SINE Alu 8 172 -13 1329 209 0 0 chr9 88679485 88679734 -53591710 - AluJb SINE Alu -22 290 42 710 185 0 7 chr9 88679982 88680133 -53591311 + CT-rich Low_complexity Low_complexity 2 151 0 2578 54 0 0 chr9 88680254 88680552 -53590892 - AluY SINE Alu -13 298 1 2000 240 48 14 chr9 88680580 88681096 -53590348 - MLT1F LTR MaLR -4 538 5 322 288 144 26 chr9 88681179 88681332 -53590112 - LTR67 LTR ERVL -4 553 383 323 130 148 0 chr9 88681424 88681478 -53589966 + Tigger2 DNA MER2_type 1 62 -2656 2413 126 80 17 chr9 88681499 88681673 -53589771 + Tigger2 DNA MER2_type 2280 2442 -276 2110 117 54 35 chr9 88681673 88682041 -53589403 - THE1C LTR MaLR 0 375 1 2413 126 80 17 chr9 88682041 88682279 -53589165 + Tigger2 DNA MER2_type 2442 2718 0 573 258 21 54 chr9 88682343 88682529 -53588915 - LTR67 LTR ERVL -377 180 1 226 234 47 109 chr9 88682675 88682726 -53588718 - LTR16A1 LTR ERVL -2 455 402 2358 99 0 3 chr9 88682726 88683029 -53588415 - AluSx SINE Alu -6 306 5 226 234 47 109 chr9 88683029 88683105 -53588339 - LTR16A1 LTR ERVL -55 402 336 325 243 75 41 chr9 88683106 88683355 -53588089 + L2 LINE L2 2794 3051 -262 2107 94 0 7 chr9 88683724 88684023 -53587421 + AluSc SINE Alu 21 309 0 2067 136 125 0 chr9 88684306 88684658 -53586786 + MER57A LTR ERV1 8 403 0 626 153 110 0 chr9 88685358 88685521 -53585923 + AluSx SINE Alu 28 208 -104 1930 101 18 0 chr9 88685648 88685926 -53585518 - L1PA11 LINE L1 0 6174 5892 254 269 167 19 chr9 88686726 88686834 -53584610 - MIR3 SINE MIR -41 167 44 189 74 0 0 chr9 88686888 88686915 -53584529 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1098 162 5 11 chr9 88686925 88687139 -53584305 + AluSg/x SINE Alu 112 312 0 1403 168 10 71 chr9 88687141 88687438 -53584006 + AluJb SINE Alu 1 279 -33 747 101 44 19 chr9 88687439 88687597 -53583847 + GA-rich Low_complexity Low_complexity 1 162 0 202 97 32 0 chr9 88687597 88687628 -53583816 + G-rich Low_complexity Low_complexity 3 34 0 582 302 107 39 chr9 88688311 88689063 -53582381 - HERVL LTR ERVL -1945 3709 2850 1309 239 64 36 chr9 88689342 88689390 -53582054 + MER74B LTR ERVL 56 101 -521 2026 174 55 11 chr9 88689390 88689769 -53581675 - MSTD LTR MaLR 0 396 1 1309 239 64 36 chr9 88689769 88690080 -53581364 + MER74B LTR ERVL 101 425 -197 646 193 0 0 chr9 88690080 88690199 -53581245 + FLAM_A SINE Alu 6 124 -18 409 236 24 41 chr9 88690201 88690324 -53581120 + MER74B LTR ERVL 420 540 -82 369 228 76 0 chr9 88690251 88690343 -53581101 - MER88 LTR ERVL -286 178 80 * 1644 154 87 0 chr9 88690962 88691248 -53580196 + AluSq SINE Alu 1 311 -2 423 301 25 0 chr9 88692346 88692509 -53578935 + MER112 DNA MER1_type 1 167 -93 2099 118 0 14 chr9 88692634 88692770 -53578674 + AluSx SINE Alu 1 137 -173 2273 110 3 0 chr9 88692770 88693078 -53578366 + AluSp SINE Alu 1 309 -4 2099 118 0 14 chr9 88693078 88693255 -53578189 + AluSx SINE Alu 137 310 0 2971 9 0 0 chr9 88693598 88693916 -53577528 - AluYb8 SINE Alu 0 318 1 516 236 114 94 chr9 88694144 88694441 -53577003 + MER34 LTR ERV1 4 306 -259 2818 166 17 84 chr9 88694447 88694559 -53576885 - MLT2B3 LTR ERVL -2 552 434 2196 113 3 22 chr9 88694559 88694870 -53576574 + AluSq SINE Alu 1 305 -8 2818 166 17 84 chr9 88694870 88694894 -53576550 - MLT2B3 LTR ERVL -120 434 410 2137 132 0 0 chr9 88694894 88695190 -53576254 + AluSx SINE Alu 1 296 -16 2818 166 17 84 chr9 88695190 88695644 -53575800 - MLT2B3 LTR ERVL -144 410 1 809 192 0 0 chr9 88695644 88695790 -53575654 - ERVL-B3 LTR ERVL -7 5757 5612 1275 171 106 44 chr9 88695790 88695949 -53575495 + AluJo SINE Alu 1 186 -126 2373 151 41 12 chr9 88695949 88696365 -53575079 - MSTA LTR MaLR 0 428 1 1275 171 106 44 chr9 88696365 88696480 -53574964 + AluJo SINE Alu 186 292 -20 8442 172 34 3 chr9 88696481 88698379 -53573065 - ERVL-B3 LTR ERVL -144 5620 3600 2346 95 3 0 chr9 88698430 88698725 -53572719 + AluSp SINE Alu 1 296 -17 381 216 167 50 chr9 88698738 88698960 -53572484 + MER34 LTR ERV1 295 542 0 1613 155 80 92 chr9 88699382 88699731 -53571713 + MER7A DNA MER2_type 2 344 -2 626 268 108 67 chr9 88700187 88700668 -53570776 + MLT1J LTR MaLR 1 501 -10 2522 108 5 22 chr9 88700758 88701128 -53570316 + THE1B LTR MaLR 1 364 0 2092 147 0 6 chr9 88701603 88701917 -53569527 + AluSx SINE Alu 1 312 0 337 289 31 0 chr9 88702743 88702840 -53568604 + MIR3 SINE MIR 88 187 -21 385 352 64 36 chr9 88702941 88703085 -53568359 - MIR SINE MIR 0 262 107 1788 183 20 0 chr9 88703085 88703391 -53568053 + AluJo SINE Alu 1 312 0 385 352 64 36 chr9 88703391 88703496 -53567948 - MIR SINE MIR -155 107 6 235 273 73 27 chr9 88704001 88704111 -53567333 + MIR SINE MIR 35 149 -113 39 22 0 0 chr9 88704164 88704210 -53567234 + AT_rich Low_complexity Low_complexity 1 46 0 2254 92 3 0 chr9 88704888 88705171 -53566273 + AluSg SINE Alu 1 284 -26 1105 153 6 17 chr9 88705207 88705383 -53566061 - L1PA8A LINE L1 -21 6110 5937 2602 137 65 14 chr9 88706011 88706441 -53565003 - LTR47A LTR ERVL 0 452 1 949 157 15 45 chr9 88706816 88707014 -53564430 + MLT1A1 LTR MaLR 10 201 -164 180 111 0 0 chr9 88707057 88707084 -53564360 + (TA)n Simple_repeat Simple_repeat 2 28 0 277 344 26 13 chr9 88707841 88707992 -53563452 + MIR SINE MIR 41 193 -69 2570 123 44 7 chr9 88708433 88708846 -53562598 - MSTA LTR MaLR 0 428 1 9488 150 22 29 chr9 88708846 88709555 -53561889 - MSTA-int LTR MaLR 0 1651 938 1987 160 3 7 chr9 88709555 88709861 -53561583 + AluSx SINE Alu 1 305 -7 9488 150 22 29 chr9 88709861 88710815 -53560629 - MSTA-int LTR MaLR -713 938 1 2603 118 41 7 chr9 88710815 88711229 -53560215 - MSTA LTR MaLR 0 428 1 312 27 0 0 chr9 88711788 88711825 -53559619 + (TG)n Simple_repeat Simple_repeat 2 38 0 331 257 9 19 chr9 88711989 88712060 -53559384 + GA-rich Low_complexity Low_complexity 2 73 -32 2593 65 0 0 chr9 88712060 88712369 -53559075 + AluY SINE Alu 1 309 -2 331 257 9 19 chr9 88712369 88712402 -53559042 + GA-rich Low_complexity Low_complexity 73 105 0 406 254 82 16 chr9 88712599 88712721 -53558723 - MIR3 SINE MIR -40 168 39 775 139 8 16 chr9 88713272 88713394 -53558050 - FLAM_A SINE Alu -14 128 8 695 250 0 0 chr9 88713402 88713534 -53557910 + MER63A DNA MER1_type 56 187 -23 1071 72 0 0 chr9 88713669 88713794 -53557650 + AluSp SINE Alu 1 125 -188 690 55 0 0 chr9 88713796 88713887 -53557557 + (TA)n Simple_repeat Simple_repeat 2 92 0 2116 121 6 16 chr9 88713908 88714222 -53557222 + AluSq SINE Alu 1 311 -2 758 117 0 90 chr9 88714456 88714601 -53556843 - FRAM SINE Alu -1 175 44 402 288 75 0 chr9 88716436 88716582 -53554862 + MIR3 SINE MIR 47 203 -5 274 61 41 0 chr9 88716745 88716794 -53554650 + (TA)n Simple_repeat Simple_repeat 2 52 0 2528 64 0 10 chr9 88716931 88717243 -53554201 + AluY SINE Alu 1 309 -2 2573 65 3 3 chr9 88717778 88718084 -53553360 + AluSp SINE Alu 1 306 -7 2411 74 0 10 chr9 88718527 88718825 -53552619 + AluY SINE Alu 1 295 -16 1411 171 43 49 chr9 88719401 88719705 -53551739 - AluSx SINE Alu -10 302 1 929 145 17 41 chr9 88719743 88719915 -53551529 + FRAM SINE Alu 9 176 0 640 211 48 7 chr9 88719940 88720087 -53551357 - Charlie8 DNA MER1_type -2201 216 64 2154 96 3 0 chr9 88720089 88720423 -53551021 + AluY SINE Alu 1 335 0 22 35 0 0 chr9 88720654 88720683 -53550761 + AT_rich Low_complexity Low_complexity 1 29 0 1966 184 20 41 chr9 88720719 88720995 -53550449 - MLT2C1 LTR ERVL -8 389 122 2410 71 0 3 chr9 88720995 88721291 -53550153 + AluY SINE Alu 1 295 -16 1966 184 20 41 chr9 88721291 88721406 -53550038 - MLT2C1 LTR ERVL -275 122 6 1909 140 0 4 chr9 88721760 88722038 -53549406 + AluSx SINE Alu 1 277 -35 823 245 64 69 chr9 88722093 88722632 -53548812 - LTR48 LTR ERV1 0 787 3 647 216 56 37 chr9 88722669 88722831 -53548613 + LTR16C LTR ERVL 77 241 -250 1299 261 16 13 chr9 88722838 88723152 -53548292 + LTR16C LTR ERVL 177 491 0 267 278 56 11 chr9 88723270 88723360 -53548084 - L2 LINE L2 -12 3301 3208 259 170 21 0 chr9 88723363 88723410 -53548034 - MER33 DNA MER1_type 0 363 316 437 274 8 8 chr9 88723458 88723575 -53547869 - MER33 DNA MER1_type -203 121 5 215 352 0 0 chr9 88723743 88723814 -53547630 + MER5A DNA MER1_type 119 189 0 492 290 71 0 chr9 88723877 88724032 -53547412 - MER5B DNA MER1_type -12 166 1 2569 66 0 0 chr9 88724168 88724469 -53546975 - AluY SINE Alu -10 301 1 2535 144 60 5 chr9 88724496 88724926 -53546518 - MER41B LTR ERV1 0 635 182 2349 99 3 13 chr9 88725649 88725962 -53545482 - AluSg SINE Alu 0 310 1 2371 140 44 70 chr9 88726004 88726212 -53545232 - Tigger2 DNA MER2_type 0 2718 2506 2483 63 0 0 chr9 88726212 88726513 -53544931 - AluY SINE Alu -10 301 1 2371 140 44 70 chr9 88726513 88726762 -53544682 - Tigger2 DNA MER2_type -212 2506 2273 416 178 0 14 chr9 88726749 88726822 -53544622 - Tigger2 DNA MER2_type -2646 72 1 * 196 254 16 32 chr9 88726822 88726885 -53544559 - L2 LINE L2 -68 3245 3184 415 281 89 18 chr9 88726886 88727110 -53544334 - L1ME4a LINE L1 -265 5856 5617 2120 106 0 7 chr9 88727255 88727538 -53543906 - AluSx SINE Alu -31 281 1 2016 143 3 0 chr9 88728102 88728402 -53543042 - AluSx SINE Alu -11 301 1 421 217 121 38 chr9 88728413 88728570 -53542874 - MIR SINE MIR -74 188 19 203 272 44 11 chr9 88728585 88728719 -53542725 - MIR SINE MIR -60 202 15 464 262 74 0 chr9 88729683 88729832 -53541612 - MIR SINE MIR -72 190 31 2452 68 0 0 chr9 88730136 88730430 -53541014 + AluY SINE Alu 2 295 -16 803 160 0 0 chr9 88730437 88730562 -53540882 + FLAM_C SINE Alu 5 129 -4 2085 128 3 0 chr9 88730982 88731271 -53540173 + AluSx SINE Alu 1 290 -22 308 324 0 0 chr9 88732042 88732150 -53539294 + L1ME4a LINE L1 5938 6045 -76 236 258 121 57 chr9 88732423 88732454 -53538990 - MIR SINE MIR -57 151 123 2252 109 13 0 chr9 88732454 88732758 -53538686 + AluSg SINE Alu 1 308 -2 236 258 121 57 chr9 88732758 88732850 -53538594 - MIR SINE MIR -85 123 20 1094 149 185 7 chr9 88733756 88734032 -53537412 + LTR56 LTR ERV1 1 325 -120 836 63 18 0 chr9 88734043 88734154 -53537290 + AluY SINE Alu 20 132 -179 1509 159 40 53 chr9 88734335 88734637 -53536807 + AluJo SINE Alu 1 298 -14 712 108 25 0 chr9 88735321 88735441 -53536003 + GA-rich Low_complexity Low_complexity 2 124 0 2272 108 3 0 chr9 88735761 88736067 -53535377 - AluSc SINE Alu -2 307 1 391 282 20 7 chr9 88736313 88736462 -53534982 - MER103 DNA DNA -13 153 3 5754 154 40 5 chr9 88736546 88737550 -53533894 + L1MC1 LINE L1 5289 6327 -6 934 210 12 0 chr9 88737556 88737718 -53533726 + FAM SINE Alu 6 169 -16 230 264 14 28 chr9 88737866 88737938 -53533506 - MIR SINE MIR -107 101 31 1949 170 3 0 chr9 88738213 88738524 -53532920 - AluJo SINE Alu 0 312 1 2583 55 7 0 chr9 88738708 88739016 -53532428 - AluY SINE Alu -1 310 1 452 296 39 22 chr9 88739150 88739380 -53532064 - L1MEd LINE L1 -5264 855 622 252 263 0 38 chr9 88739420 88739500 -53531944 - L1MEd LINE L1 -5582 537 461 2135 120 7 7 chr9 88739692 88739991 -53531453 - AluSx SINE Alu -13 299 1 310 268 32 16 chr9 88739991 88740114 -53531330 - L1MEd LINE L1 -5982 137 13 23 0 0 0 chr9 88740296 88740319 -53531125 + AT_rich Low_complexity Low_complexity 1 23 0 2325 77 13 3 chr9 88741082 88741382 -53530062 + AluSp SINE Alu 1 303 -10 1553 197 32 26 chr9 88741565 88741875 -53529569 + AluJb SINE Alu 1 312 0 249 119 0 0 chr9 88742607 88742649 -53528795 + MADE1 DNA Mariner 1 42 -38 209 344 21 0 chr9 88744391 88744487 -53526957 + L2 LINE L2 2964 3061 -211 721 268 92 28 chr9 88744627 88744952 -53526492 - LTR33 LTR ERVL -72 449 104 260 319 168 0 chr9 88745030 88745149 -53526295 + L2 LINE L2 3124 3262 -10 2333 62 0 0 chr9 88745424 88745700 -53525744 - AluY SINE Alu -1 310 35 390 276 86 50 chr9 88745848 88746069 -53525375 + MLT1J1 LTR MaLR 166 394 -52 289 270 88 44 chr9 88746320 88746457 -53524987 - MIR SINE MIR -3 259 117 189 0 0 0 chr9 88746484 88746505 -53524939 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 384 179 26 13 chr9 88746619 88746697 -53524747 - MLT1G1 LTR MaLR -10 585 507 183 156 0 0 chr9 88746843 88746875 -53524569 + GA-rich Low_complexity Low_complexity 2 33 0 645 246 43 38 chr9 88746877 88747088 -53524356 - MLT1F1 LTR MaLR -355 212 1 2155 87 10 20 chr9 88747644 88747944 -53523500 + AluSq SINE Alu 1 297 -16 1349 158 64 26 chr9 88748311 88748396 -53523048 - MER33 DNA MER1_type -2261 324 244 2120 79 43 0 chr9 88748396 88748675 -53522769 + AluSc SINE Alu 1 291 -18 1349 158 64 26 chr9 88748675 88748900 -53522544 - MER33 DNA MER1_type -2341 244 2 323 276 8 67 chr9 88749099 88749233 -53522211 + L2 LINE L2 3150 3275 -38 2128 97 0 82 chr9 88752962 88753292 -53518152 + AluSg SINE Alu 1 303 -7 251 302 121 20 chr9 88753564 88753713 -53517731 + MIR SINE MIR 21 184 -78 296 148 16 0 chr9 88754941 88755002 -53516442 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 815 205 7 7 chr9 88755002 88755153 -53516291 - FRAM SINE Alu -15 151 1 22 35 0 0 chr9 88755156 88755185 -53516259 + AT_rich Low_complexity Low_complexity 1 29 0 248 280 0 27 chr9 88755272 88755347 -53516097 + L2 LINE L2 3189 3261 -11 1909 166 39 3 chr9 88756388 88756720 -53514724 + MER2 DNA MER2_type 1 344 0 2250 105 0 10 chr9 88757106 88757419 -53514025 - AluSg SINE Alu 0 310 1 1993 131 7 14 chr9 88757426 88757716 -53513728 - AluSx SINE Alu -24 288 1 189 294 49 78 chr9 88757781 88757883 -53513561 - MIR SINE MIR -89 119 21 2206 89 29 0 chr9 88758946 88759227 -53512217 - AluSp SINE Alu -22 291 3 2110 117 3 0 chr9 88759740 88760030 -53511414 - AluSx SINE Alu -15 297 7 2533 54 0 0 chr9 88760071 88760366 -53511078 - AluY SINE Alu -16 295 1 2401 80 7 0 chr9 88761084 88761384 -53510060 - AluSp SINE Alu -11 302 1 626 241 47 37 chr9 88762478 88762669 -53508775 + MIR SINE MIR 49 241 -21 2337 98 0 9 chr9 88763380 88763393 -53508051 - AluSx SINE Alu 0 312 300 345 24 0 0 chr9 88763393 88763435 -53508009 + (TG)n Simple_repeat Simple_repeat 1 42 0 2337 98 0 9 chr9 88763435 88763736 -53507708 - AluSx SINE Alu -12 300 1 978 182 35 0 chr9 88763777 88763947 -53507497 - FRAM SINE Alu -1 175 1 2232 98 10 20 chr9 88764374 88764671 -53506773 - AluSx SINE Alu -18 294 1 978 145 4 133 chr9 88765574 88765823 -53505621 - MER20 DNA MER1_type 0 219 3 385 334 84 48 chr9 88766352 88766744 -53504700 + L3 LINE CR1 733 1138 -439 335 336 33 24 chr9 88766788 88766880 -53504564 - MIR SINE MIR -25 237 147 870 224 114 0 chr9 88766880 88767081 -53504363 - MER58A DNA MER1_type 0 224 1 335 336 33 24 chr9 88767081 88767199 -53504245 - MIR SINE MIR -115 147 25 413 305 117 5 chr9 88767254 88767477 -53503967 + L3 LINE CR1 1324 1571 -6 285 239 51 43 chr9 88768733 88768850 -53502594 - LTR33 LTR ERVL -321 200 83 2275 99 0 50 chr9 88769830 88770152 -53501292 - AluSx SINE Alu -6 306 1 220 174 0 43 chr9 88772485 88772531 -53498913 + (CATA)n Simple_repeat Simple_repeat 2 45 0 642 184 94 22 chr9 88772534 88772827 -53498617 + MER63 DNA MER1_type 51 434 -627 427 256 0 0 chr9 88772941 88773031 -53498413 + MER63 DNA MER1_type 972 1061 -1 224 339 25 17 chr9 88773037 88773155 -53498289 + L2 LINE L2 3154 3272 0 1842 143 106 52 chr9 88773477 88773883 -53497561 + MSTC LTR MaLR 1 428 0 270 270 22 66 chr9 88774107 88774244 -53497200 - L1MC4a LINE L1 -1867 5941 5811 769 245 141 27 chr9 88774245 88774775 -53496669 - L1MC4a LINE L1 -334 5787 5189 785 168 99 8 chr9 88774783 88774951 -53496493 - L1MB1 LINE L1 0 6180 6015 1879 172 0 10 chr9 88775027 88775324 -53496120 - AluJb SINE Alu -18 294 1 249 258 32 21 chr9 88775359 88775452 -53495992 - L1P LINE L1 -1099 5047 4954 3102 122 2 2 chr9 88776314 88776774 -53494670 + L1PB1 LINE L1 5692 6151 0 758 187 0 15 chr9 88777751 88777885 -53493559 + FLAM_C SINE Alu 2 133 0 1176 263 83 8 chr9 88777898 88778297 -53493147 - L1ME1 LINE L1 -12 6154 5726 2432 97 0 0 chr9 88779931 88780242 -53491202 - AluSq SINE Alu -2 311 1 380 234 40 24 chr9 88780247 88780371 -53491073 + L2 LINE L2 2938 3063 -250 1691 83 0 9 chr9 88780399 88780616 -53490828 + AluSg/x SINE Alu 88 302 -10 2607 158 18 11 chr9 88780664 88781108 -53490336 + MER50 LTR ERV1 275 721 -13 327 250 0 0 chr9 88781210 88781282 -53490162 + L2 LINE L2 3238 3309 -4 1596 221 33 0 chr9 88783877 88784207 -53487237 + MER58B DNA MER1_type 1 341 0 511 261 23 28 chr9 88784489 88784665 -53486779 - L1MC4 LINE L1 -1 8041 7867 230 308 9 37 chr9 88784831 88784938 -53486506 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 2179 112 0 0 chr9 88785400 88785687 -53485757 - AluSx SINE Alu -25 287 1 2419 87 0 0 chr9 88786366 88786666 -53484778 - AluSx SINE Alu -9 303 4 25 0 0 0 chr9 88787455 88787480 -53483964 + AT_rich Low_complexity Low_complexity 1 25 0 231 234 112 37 chr9 88787599 88787706 -53483738 + L1ME4a LINE L1 6007 6121 0 2157 109 3 3 chr9 88788708 88789010 -53482434 - AluSg SINE Alu -8 302 1 370 222 51 28 chr9 88789148 88789324 -53482120 + (TG)n Simple_repeat Simple_repeat 1 180 0 63 57 0 0 chr9 88790674 88790779 -53480665 + AT_rich Low_complexity Low_complexity 1 105 0 223 203 27 27 chr9 88790809 88790883 -53480561 + (TA)n Simple_repeat Simple_repeat 1 74 0 2205 181 41 78 chr9 88791031 88791156 -53480288 + Tigger7 DNA MER2_type 1 129 -2358 2183 104 42 0 chr9 88791156 88791443 -53480001 - AluSx SINE Alu -13 299 1 2205 181 41 78 chr9 88791443 88791909 -53479535 + Tigger7 DNA MER2_type 129 611 -1876 2113 137 0 3 chr9 88791909 88792216 -53479228 - AluSx SINE Alu -6 306 1 2205 181 41 78 chr9 88792216 88792377 -53479067 + Tigger7 DNA MER2_type 611 2485 -2 1997 156 0 3 chr9 88792991 88793293 -53478151 + AluSx SINE Alu 1 301 -11 396 284 119 35 chr9 88793959 88794160 -53477284 - MIR SINE MIR 0 262 45 285 203 211 0 chr9 88794357 88794485 -53476959 - MIR SINE MIR -81 181 27 278 326 21 0 chr9 88796179 88796274 -53475170 + (TATG)n Simple_repeat Simple_repeat 3 99 0 2305 90 7 0 chr9 88797280 88797570 -53473874 - AluSq SINE Alu -21 292 1 2082 198 119 4 chr9 88797865 88798351 -53473093 - MER74A LTR ERVL -2 556 15 204 274 9 47 chr9 88798407 88798513 -53472931 + CT-rich Low_complexity Low_complexity 4 105 0 1849 172 0 0 chr9 88798600 88798896 -53472548 + AluJb SINE Alu 1 296 -16 24 53 0 0 chr9 88798928 88798966 -53472478 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr9 88798981 88799002 -53472442 + (ATG)n Simple_repeat Simple_repeat 1 21 0 748 218 40 29 chr9 88799075 88799249 -53472195 + MER3 DNA MER1_type 1 129 -80 1418 166 90 88 chr9 88799249 88799304 -53472140 - MLT2D LTR ERVL 0 414 361 303 28 0 0 chr9 88799304 88799340 -53472104 + (TG)n Simple_repeat Simple_repeat 2 37 0 1418 166 90 88 chr9 88799340 88799694 -53471750 - MLT2D LTR ERVL -53 361 4 270 260 156 0 chr9 88799839 88799935 -53471509 - MIR SINE MIR -140 122 12 307 265 147 0 chr9 88800012 88800114 -53471330 + MIR SINE MIR 37 153 -109 3976 74 35 13 chr9 88800654 88801195 -53470249 - L1PA11 LINE L1 0 6174 5622 304 252 105 52 chr9 88801511 88801721 -53469723 - L1MC4 LINE L1 -1 8041 7821 1486 234 62 50 chr9 88801754 88802048 -53469396 - L1ME2 LINE L1 -14 6150 5846 1625 179 167 44 chr9 88802048 88802461 -53468983 - MLT1C LTR MaLR -3 464 1 1486 234 62 50 chr9 88802461 88802670 -53468774 - L1ME2 LINE L1 -318 5846 5641 2374 65 0 0 chr9 88802878 88803172 -53468272 - AluSg SINE Alu -16 294 1 1208 158 19 16 chr9 88804286 88804326 -53467118 - L1MB3 LINE L1 -2 6178 6140 1513 173 10 37 chr9 88804326 88804626 -53466818 - AluJo SINE Alu -20 292 1 1208 158 19 16 chr9 88804626 88804839 -53466605 - L1MB3 LINE L1 -40 6140 5936 290 333 54 0 chr9 88805094 88805205 -53466239 + L2 LINE L2 3141 3257 -15 2306 93 0 0 chr9 88805210 88805522 -53465922 - AluSx SINE Alu 0 312 1 2378 66 3 7 chr9 88807216 88807521 -53463923 - AluSp SINE Alu -1 312 9 659 237 23 17 chr9 88807923 88808096 -53463348 - MIR SINE MIR -29 233 60 1985 143 0 0 chr9 88809384 88809691 -53461753 + AluSx SINE Alu 1 307 -5 397 280 71 0 chr9 88810799 88810948 -53460496 - MIR SINE MIR 0 262 102 465 104 0 0 chr9 88811002 88811079 -53460365 + (TAGGG)n Simple_repeat Simple_repeat 2 78 0 755 234 75 0 chr9 88811088 88811276 -53460168 + MER3 DNA MER1_type 1 202 -7 195 288 61 15 chr9 88811359 88811425 -53460019 - L2 LINE L2 0 3272 3204 2021 99 46 17 chr9 88811719 88812021 -53459423 - AluSx SINE Alu -1 311 1 1910 200 22 40 chr9 88812053 88812393 -53459051 - L1MB2 LINE L1 0 6171 5839 2135 111 7 0 chr9 88812393 88812691 -53458753 - AluSx SINE Alu -12 300 1 1910 200 22 40 chr9 88812691 88812805 -53458639 - L1MB2 LINE L1 -332 5839 5725 2451 44 0 0 chr9 88812970 88813266 -53458178 + AluY SINE Alu 1 296 -15 293 309 89 30 chr9 88813412 88813580 -53457864 - MLT1J LTR MaLR -9 502 325 506 302 55 14 chr9 88813962 88814282 -53457162 - MLT1I LTR MaLR -6 403 22 761 243 102 65 chr9 88815207 88815610 -53455834 + MLT1H LTR MaLR 108 525 -24 229 288 65 50 chr9 88815985 88816124 -53455320 + MIR3 SINE MIR 7 147 -61 927 232 0 19 chr9 88816128 88816335 -53455109 - MSTD LTR MaLR 0 396 194 967 205 51 34 chr9 88816355 88816589 -53454855 - MSTD LTR MaLR -157 239 2 346 275 14 72 chr9 88817125 88817263 -53454181 - MIR3 SINE MIR -32 176 47 980 206 47 0 chr9 88817525 88817736 -53453708 - MIR SINE MIR -7 255 31 2379 69 0 3 chr9 88817742 88818045 -53453399 - AluY SINE Alu -9 302 1 231 302 179 11 chr9 88819885 88820064 -53451380 - Charlie8 DNA MER1_type -2156 261 53 232 315 97 24 chr9 88820808 88820973 -53450471 + MER5B DNA MER1_type 1 177 -1 404 300 54 8 chr9 88820983 88821113 -53450331 - MER5A DNA MER1_type -2 187 52 344 275 38 38 chr9 88821004 88821135 -53450309 + MER5A DNA MER1_type 35 165 -24 * 633 175 14 7 chr9 88822495 88822638 -53448806 + CT-rich Low_complexity Low_complexity 2 145 0 1101 153 37 5 chr9 88822648 88822837 -53448607 - MER20 DNA MER1_type -6 213 19 21 0 0 0 chr9 88823741 88823762 -53447682 + AT_rich Low_complexity Low_complexity 1 21 0 312 306 67 44 chr9 88824532 88824712 -53446732 - L1MC4 LINE L1 -1344 6698 6515 272 240 74 83 chr9 88825596 88825717 -53445727 + MIR SINE MIR 33 152 -56 262 257 239 9 chr9 88825730 88825839 -53445605 - MER5A DNA MER1_type -1 188 55 198 231 58 19 chr9 88825807 88825859 -53445585 + MER5A DNA MER1_type 114 167 -22 * 221 278 0 0 chr9 88825872 88825926 -53445518 + MIR3 SINE MIR 153 206 -2 788 290 101 31 chr9 88825940 88826326 -53445118 + MLT1J2 LTR MaLR 5 417 -33 522 212 165 68 chr9 88826435 88826916 -53444528 - MLT1G LTR MaLR -6 561 9 624 189 25 8 chr9 88826993 88827115 -53444329 + FLAM_C SINE Alu 3 126 -17 1342 171 72 111 chr9 88827173 88827659 -53443785 - MLT1C LTR MaLR 0 467 1 234 284 162 34 chr9 88828651 88828799 -53442645 + MIR SINE MIR 80 246 -16 1178 254 99 29 chr9 88828950 88829394 -53442050 + MLT2B1 LTR ERVL 46 520 0 489 232 30 142 chr9 88830627 88830860 -53440584 - MER102b DNA MER1_type -9 332 126 22 35 0 0 chr9 88831161 88831190 -53440254 + AT_rich Low_complexity Low_complexity 1 29 0 552 246 66 0 chr9 88831200 88831322 -53440122 - MER5A DNA MER1_type 0 189 60 653 203 8 0 chr9 88831327 88831455 -53439989 - FLAM_A SINE Alu -4 129 1 1538 190 14 0 chr9 88831466 88831761 -53439683 - AluJo SINE Alu -13 299 1 365 194 15 0 chr9 88831800 88831867 -53439577 - MER5A DNA MER1_type -114 75 8 751 275 97 29 chr9 88831909 88832251 -53439193 - MLT1A1 LTR MaLR 0 365 1 930 227 93 30 chr9 88832251 88832604 -53438840 + MLT1C LTR MaLR 52 467 0 900 149 39 0 chr9 88833208 88833362 -53438082 - L1MB2 LINE L1 0 6171 6012 180 283 150 17 chr9 88835745 88835805 -53435639 - MIR SINE MIR -70 192 125 506 295 160 0 chr9 88836569 88836813 -53434631 - LTR33 LTR ERVL -4 517 235 397 308 15 8 chr9 88836861 88836994 -53434450 - LTR33 LTR ERVL -378 143 10 635 322 62 42 chr9 88837693 88838146 -53433298 + L2 LINE L2 2225 2686 -628 3745 188 46 5 chr9 88838175 88838935 -53432509 + L1MB7 LINE L1 5379 6169 -15 258 332 29 104 chr9 88839044 88839427 -53432017 + L2 LINE L2 2915 3268 -4 201 296 0 0 chr9 88840313 88840367 -53431077 + CT-rich Low_complexity Low_complexity 2 55 0 611 201 6 0 chr9 88840546 88840715 -53430729 + GA-rich Low_complexity Low_complexity 3 172 0 2010 114 3 3 chr9 88842635 88842932 -53428512 + AluSx SINE Alu 1 297 -15 214 257 27 27 chr9 88843733 88843807 -53427637 - MIR SINE MIR -6 256 183 292 286 132 0 chr9 88843937 88844028 -53427416 - MIR SINE MIR -2 260 158 1257 267 46 70 chr9 88844038 88844563 -53426881 - MLT1G1 LTR MaLR -11 584 73 254 250 0 17 chr9 88844589 88844649 -53426795 - MIR SINE MIR -141 121 63 191 258 15 45 chr9 88844867 88844933 -53426511 + L3 LINE CR1 1208 1271 -306 292 240 59 74 chr9 88844982 88845149 -53426295 + MER58 DNA MER1_type 6 2372 -48 278 264 126 0 chr9 88845175 88845262 -53426182 + L3 LINE CR1 1305 1402 -175 789 234 34 11 chr9 88845332 88845507 -53425937 + MER63A DNA MER1_type 4 182 -28 265 224 0 0 chr9 88845676 88845725 -53425719 - MIR SINE MIR -142 120 72 477 269 50 41 chr9 88845780 88846124 -53425320 + L1MC4a LINE L1 5126 5471 -748 2014 106 4 0 chr9 88846148 88846422 -53425022 + AluSq SINE Alu 9 283 -30 185 0 40 0 chr9 88846428 88846453 -53424991 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 382 337 121 32 chr9 88846456 88846848 -53424596 + L1MC4a LINE L1 5484 5815 -355 663 54 0 0 chr9 88848282 88848374 -53423070 + (CA)n Simple_repeat Simple_repeat 2 93 0 290 248 228 55 chr9 88849218 88849280 -53422164 - MER5A DNA MER1_type -6 183 133 2256 155 68 0 chr9 88849280 88849679 -53421765 + MSTA LTR MaLR 2 427 -1 290 248 228 55 chr9 88849679 88849761 -53421683 - MER5A DNA MER1_type -56 133 14 1870 248 40 28 chr9 88850718 88851215 -53420229 - MLT1J LTR MaLR -8 503 1 2120 94 7 10 chr9 88851483 88851781 -53419663 + AluSx SINE Alu 1 297 -15 1999 101 0 8 chr9 88851781 88852120 -53419324 + AluSx SINE Alu 1 282 -30 252 238 0 0 chr9 88852992 88853055 -53418389 + (CA)n Simple_repeat Simple_repeat 1 63 0 222 324 36 101 chr9 88853323 88853399 -53418045 + MIR SINE MIR 46 125 -137 2081 92 0 7 chr9 88853399 88853705 -53417739 - AluSx SINE Alu 0 304 1 222 324 36 101 chr9 88853705 88853846 -53417598 + MIR SINE MIR 125 250 -12 978 176 16 21 chr9 88854018 88854205 -53417239 + MER5A DNA MER1_type 3 188 -1 522 264 6 88 chr9 88854220 88854361 -53417083 - MER5B DNA MER1_type -5 173 49 2081 118 3 0 chr9 88854361 88854665 -53416779 + AluSx SINE Alu 1 305 -7 522 264 6 88 chr9 88854665 88854705 -53416739 - MER5B DNA MER1_type -129 49 7 531 242 140 41 chr9 88854915 88855229 -53416215 - L1ME4a LINE L1 -3 6118 5774 727 299 14 0 chr9 88855283 88855500 -53415944 - L1ME4a LINE L1 -422 5699 5480 315 136 0 0 chr9 88856641 88856700 -53414744 + (TCCA)n Simple_repeat Simple_repeat 1 59 0 26 0 0 0 chr9 88857094 88857120 -53414324 + AT_rich Low_complexity Low_complexity 1 26 0 504 185 22 0 chr9 88857155 88857247 -53414197 + MLT1D LTR MaLR 8 101 -404 2160 95 0 0 chr9 88859403 88859698 -53411746 - AluSg SINE Alu -15 295 1 198 71 0 0 chr9 88859766 88859794 -53411650 + (CAG)n Simple_repeat Simple_repeat 1 28 0 1353 141 21 0 chr9 88860898 88861139 -53410305 - L1MA8 LINE L1 -2 6289 6044 2425 117 44 0 chr9 88861143 88861510 -53409934 - L1MA8 LINE L1 -472 5819 5437 243 0 0 0 chr9 88861510 88861537 -53409907 + (TG)n Simple_repeat Simple_repeat 2 28 0 2072 112 0 0 chr9 88861537 88861822 -53409622 - AluSq SINE Alu -28 285 1 1399 179 17 7 chr9 88861822 88862112 -53409332 - L1MA8 LINE L1 -781 5365 5073 1134 191 54 89 chr9 88862580 88862853 -53408591 + MER33 DNA MER1_type 1 261 -2324 1841 161 0 7 chr9 88862853 88863152 -53408292 + AluJb SINE Alu 3 299 -13 1134 191 54 89 chr9 88863152 88863214 -53408230 + MER33 DNA MER1_type 261 324 0 239 263 0 13 chr9 88863261 88863337 -53408107 + (TA)n Simple_repeat Simple_repeat 2 76 0 960 226 9 14 chr9 88864780 88864992 -53406452 - MIR SINE MIR -26 236 26 214 325 110 25 chr9 88865275 88865328 -53406116 - MIR SINE MIR -66 196 149 195 42 0 0 chr9 88865328 88865352 -53406092 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 214 325 110 25 chr9 88865352 88865461 -53405983 - MIR SINE MIR -113 149 20 1949 96 0 69 chr9 88865754 88866057 -53405387 - AluSp SINE Alu -31 282 1 289 310 80 20 chr9 88866060 88866160 -53405284 - L3 LINE CR1 -9 1568 1463 600 287 79 53 chr9 88866326 88866629 -53404815 - L3 LINE CR1 -597 980 670 230 294 42 84 chr9 88866724 88866867 -53404577 - L3 LINE CR1 -1071 506 370 264 59 0 0 chr9 88867220 88867254 -53404190 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1703 166 7 7 chr9 88867437 88867733 -53403711 - AluJo SINE Alu -12 300 5 22 0 0 0 chr9 88872815 88872837 -53398607 + AT_rich Low_complexity Low_complexity 1 22 0 553 237 210 53 chr9 88873619 88874127 -53397317 - MLT1H1 LTR MaLR 0 555 5 244 212 124 0 chr9 88874474 88874558 -53396886 - MIR SINE MIR -108 154 58 180 287 32 75 chr9 88874605 88874793 -53396651 + L2 LINE L2 2876 3055 -217 232 95 0 48 chr9 88875582 88875624 -53395820 + MER103 DNA DNA 22 61 -105 348 314 58 67 chr9 88875989 88876212 -53395232 + MIR SINE MIR 6 226 -36 2468 211 85 51 chr9 88876583 88877159 -53394285 + MER82 DNA MER2_type 1 601 -52 1619 171 0 23 chr9 88877159 88877458 -53393986 + AluJo SINE Alu 9 300 -12 2468 211 85 51 chr9 88877458 88877507 -53393937 + MER82 DNA MER2_type 601 647 -6 621 244 80 23 chr9 88878492 88878668 -53392776 - MIR SINE MIR 0 262 77 2129 72 0 18 chr9 88879465 88879743 -53391701 - AluSg SINE Alu -1 309 37 306 87 0 0 chr9 88879750 88879796 -53391648 + (TC)n Simple_repeat Simple_repeat 1 46 0 619 278 35 18 chr9 88880788 88881015 -53390429 - MLT1K LTR MaLR -24 564 334 380 316 0 10 chr9 88881100 88881198 -53390246 - MLT1K LTR MaLR -386 202 106 248 291 29 10 chr9 88882350 88882453 -53388991 + CT-rich Low_complexity Low_complexity 2 106 0 499 239 17 0 chr9 88883450 88883567 -53387877 - LTR16A LTR ERVL -3 447 329 1031 218 37 0 chr9 88883664 88883880 -53387564 + MER58A DNA MER1_type 1 224 0 426 253 100 27 chr9 88884141 88884291 -53387153 - MLT1K LTR MaLR -420 175 15 272 204 20 82 chr9 88884368 88884466 -53386978 - MER63 DNA MER1_type -46 1642 699 186 268 0 0 chr9 88884627 88884668 -53386776 - MIR SINE MIR -60 148 108 218 283 139 53 chr9 88885276 88885463 -53385981 - MIR SINE MIR -25 237 35 321 378 7 20 chr9 88886061 88886209 -53385235 - MER5A DNA MER1_type -43 146 1 199 281 37 37 chr9 88886515 88886597 -53384847 - L2 LINE L2 -1 3312 3231 2137 102 7 0 chr9 88886712 88887007 -53384437 - AluSc SINE Alu -10 299 3 871 234 156 14 chr9 88888530 88888825 -53382619 + LTR16C LTR ERVL 155 491 0 197 349 45 0 chr9 88890557 88890623 -53380821 + L3 LINE CR1 1055 1123 -454 481 189 134 8 chr9 88890734 88890861 -53380583 + Charlie8 DNA MER1_type 46 188 -2229 27 0 0 0 chr9 88942374 88942401 -53329043 + AT_rich Low_complexity Low_complexity 1 27 0 200 182 0 18 chr9 88942776 88942831 -53328613 + (CA)n Simple_repeat Simple_repeat 2 55 0 698 176 0 15 chr9 88946045 88946176 -53325268 - L1MD3 LINE L1 -10 7985 7857 442 241 95 9 chr9 88947094 88947210 -53324234 + MER91B DNA MER1_type 5 130 -60 288 300 36 36 chr9 88947223 88947333 -53324111 + MER91B DNA MER1_type 77 186 -4 815 262 9 5 chr9 88948089 88948303 -53323141 - MIR SINE MIR -34 228 14 1021 218 14 5 chr9 88949735 88949951 -53321493 + MER20 DNA MER1_type 1 218 -1 228 67 0 0 chr9 88952130 88952160 -53319284 + (TG)n Simple_repeat Simple_repeat 2 31 0 37 23 0 0 chr9 88952292 88952336 -53319108 + AT_rich Low_complexity Low_complexity 1 44 0 2191 110 0 3 chr9 88952336 88952627 -53318817 - AluSx SINE Alu -22 290 1 243 290 63 83 chr9 88955296 88955658 -53315786 + L1ME4a LINE L1 5762 6116 -5 2190 234 50 11 chr9 88955686 88956242 -53315202 - MER119 DNA MER1_type -1 582 5 906 218 42 5 chr9 88957558 88957774 -53313670 + MER58A DNA MER1_type 1 224 0 369 139 174 0 chr9 88958998 88959113 -53312331 - Charlie5 DNA MER1_type -31 2581 2447 4399 175 15 35 chr9 88959116 88959466 -53311978 - L1PB4 LINE L1 -1 6155 5799 2361 86 20 0 chr9 88959466 88959767 -53311677 - AluSc SINE Alu 0 309 3 4399 175 15 35 chr9 88959767 88961190 -53310254 - L1PB4 LINE L1 -357 5799 4414 1283 196 43 0 chr9 88961297 88961577 -53309867 - L1PB4 LINE L1 -1736 4410 4119 369 291 75 8 chr9 88961977 88962111 -53309333 - L1ME3A LINE L1 -7 6163 6021 1582 251 64 29 chr9 88963396 88964045 -53307399 + L2 LINE L2 2623 3308 -5 407 301 101 16 chr9 88964847 88965081 -53306363 - MIR SINE MIR 0 262 10 23 0 0 0 chr9 88965165 88965188 -53306256 + AT_rich Low_complexity Low_complexity 1 23 0 2396 117 0 0 chr9 88965189 88965497 -53305947 - AluSx SINE Alu -4 308 1 352 269 195 7 chr9 88965684 88965833 -53305611 + MER5B DNA MER1_type 1 177 -1 854 199 73 29 chr9 88966069 88966275 -53305169 + MER20 DNA MER1_type 1 215 -4 21 71 0 0 chr9 88966427 88966469 -53304975 + AT_rich Low_complexity Low_complexity 1 42 0 198 364 58 45 chr9 88966525 88966679 -53304765 + MIR SINE MIR 106 261 -1 305 98 11 152 chr9 88967894 88967986 -53303458 + L1ME LINE L1 5682 5760 -361 24 53 0 0 chr9 88968216 88968254 -53303190 + AT_rich Low_complexity Low_complexity 1 38 0 41 72 0 0 chr9 88970073 88970156 -53301288 + AT_rich Low_complexity Low_complexity 1 83 0 1551 192 3 44 chr9 88970220 88970537 -53300907 - AluJo SINE Alu -8 304 1 676 303 43 13 chr9 88970632 88970863 -53300581 + MIR SINE MIR 3 240 -22 312 203 150 41 chr9 88971767 88971962 -53299482 - MER20B DNA MER1_type 0 219 1 377 231 124 16 chr9 88972437 88972558 -53298886 - MER63 DNA MER1_type -55 781 22 2264 99 0 50 chr9 88972940 88973263 -53298181 + AluSx SINE Alu 1 307 -5 290 245 59 59 chr9 88973647 88973749 -53297695 - L2 LINE L2 0 3313 3212 513 153 219 7 chr9 88973784 88973921 -53297523 + MER58A DNA MER1_type 2 167 0 251 303 118 35 chr9 88973948 88974202 -53297242 - L2 LINE L2 -176 3137 2863 432 0 0 0 chr9 88974571 88974619 -53296825 + (CA)n Simple_repeat Simple_repeat 2 49 0 428 223 130 6 chr9 88975639 88975800 -53295644 + MIR3 SINE MIR 34 214 -31 1254 312 79 17 chr9 88976911 88977610 -53293834 - MER20B DNA MER1_type -35 748 7 186 264 215 16 chr9 88978318 88978439 -53293005 + L2 LINE L2 3127 3271 -1 2300 77 0 3 chr9 88978811 88979125 -53292319 - AluY SINE Alu 0 316 4 282 56 0 0 chr9 88979361 88979397 -53292047 + (CA)n Simple_repeat Simple_repeat 1 36 0 1030 221 4 21 chr9 88979451 88979691 -53291753 + L1MB5 LINE L1 5938 6173 -1 2516 74 3 0 chr9 88979721 88980020 -53291424 + AluSp SINE Alu 2 301 -12 199 297 194 42 chr9 88981418 88981583 -53289861 - MIR SINE MIR -9 253 64 454 167 8 8 chr9 88981676 88981796 -53289648 + Tigger3b DNA MER2_type 649 768 -463 2493 91 0 0 chr9 88981796 88982104 -53289340 - AluSg SINE Alu -2 308 1 587 264 48 22 chr9 88984440 88984812 -53286632 + MER113 DNA MER1_type? 71 477 -44 319 297 0 0 chr9 88985650 88985724 -53285720 + L2 LINE L2 3236 3309 -4 5944 117 6 21 chr9 88985726 88986708 -53284736 - L1MA4A LINE L1 -19 6986 6020 642 112 10 0 chr9 88986715 88986813 -53284631 - L1PA16 LINE L1 -3 6163 6065 4922 141 12 6 chr9 88986813 88988062 -53283382 - L1PA16 LINE L1 -156 6010 4751 13628 184 35 20 chr9 88988063 88993741 -53277703 - L1MA4A LINE L1 -814 6034 269 2016 162 92 37 chr9 88995144 88995433 -53276011 - MSTB2 LTR MaLR 0 457 135 189 0 0 0 chr9 88995433 88995454 -53275990 + (CTCA)n Simple_repeat Simple_repeat 2 22 0 2016 162 92 37 chr9 88995454 88995597 -53275847 - MSTB2 LTR MaLR -322 135 1 1953 165 3 3 chr9 88996395 88996704 -53274740 + AluJb SINE Alu 1 309 -3 961 211 40 4 chr9 88997665 88997892 -53273552 - MER46A DNA MER2_type 0 236 2 232 305 156 0 chr9 88997897 88998025 -53273419 - HAL1 LINE L1 0 2507 2360 500 284 23 58 chr9 88998063 88998320 -53273124 - MER112 DNA MER1_type -4 256 9 2061 158 0 7 chr9 88999215 88999525 -53271919 - AluJo SINE Alu -4 308 1 312 256 81 19 chr9 88999907 89000067 -53271377 + L1M4 LINE L1 4878 5047 -1099 22 0 0 0 chr9 89000171 89000193 -53271251 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr9 89000443 89000465 -53270979 + AT_rich Low_complexity Low_complexity 1 22 0 186 167 0 0 chr9 89000998 89001034 -53270410 + GA-rich Low_complexity Low_complexity 3 38 0 762 178 31 0 chr9 89001246 89001375 -53270069 + FLAM_A SINE Alu 1 133 0 308 237 148 30 chr9 89002988 89003123 -53268321 - L1MC4a LINE L1 -154 7654 7504 249 242 0 16 chr9 89003627 89003689 -53267755 - L1MC4 LINE L1 -6 8036 7976 30 0 0 0 chr9 89003695 89003725 -53267719 + AT_rich Low_complexity Low_complexity 1 30 0 2080 107 71 0 chr9 89003725 89004006 -53267438 - AluSx SINE Alu -11 301 1 681 270 136 39 chr9 89004028 89004417 -53267027 - L1MC4 LINE L1 -89 7953 7527 220 106 0 43 chr9 89006979 89007026 -53264418 + (TA)n Simple_repeat Simple_repeat 2 46 0 253 258 183 43 chr9 89007664 89007850 -53263594 - MLT1K LTR MaLR -167 421 210 1268 211 7 24 chr9 89008010 89008304 -53263140 - AluJo SINE Alu -23 289 1 1993 113 0 10 chr9 89009211 89009504 -53261940 + AluSq SINE Alu 1 290 -23 1000 97 0 0 chr9 89009604 89009738 -53261706 + AluSg/x SINE Alu 157 290 -22 637 142 32 52 chr9 89009761 89009916 -53261528 + L1MB3 LINE L1 6032 6183 0 21 71 0 0 chr9 89010068 89010110 -53261334 + AT_rich Low_complexity Low_complexity 1 42 0 681 243 19 14 chr9 89011182 89011572 -53259872 + (TG)n Simple_repeat Simple_repeat 1 391 0 361 319 98 20 chr9 89012080 89012334 -53259110 - L1ME4a LINE L1 -187 5934 5661 937 199 126 44 chr9 89012456 89012844 -53258600 - MER69 DNA AcHobo -187 2339 1920 182 225 125 62 chr9 89013091 89013171 -53258273 - L3 LINE CR1 -1014 563 479 2255 81 0 26 chr9 89013326 89013633 -53257811 - AluSc SINE Alu -10 299 1 225 0 0 0 chr9 89013636 89013661 -53257783 + (T)n Simple_repeat Simple_repeat 1 25 0 317 246 16 32 chr9 89013840 89013918 -53257526 + GA-rich Low_complexity Low_complexity 2 79 -46 2142 104 10 0 chr9 89013918 89014226 -53257218 + AluSx SINE Alu 1 311 -1 317 246 16 32 chr9 89014226 89014273 -53257171 + GA-rich Low_complexity Low_complexity 79 125 0 905 173 63 0 chr9 89015242 89015433 -53256011 + L1MB3 LINE L1 5981 6183 0 595 261 125 11 chr9 89017409 89017593 -53253851 + MIR SINE MIR 34 238 -24 308 365 93 14 chr9 89018714 89018928 -53252516 - MIR SINE MIR -29 233 3 376 168 20 10 chr9 89019234 89019335 -53252109 + CT-rich Low_complexity Low_complexity 4 105 0 25 51 0 0 chr9 89021641 89021680 -53249764 + AT_rich Low_complexity Low_complexity 1 39 0 2472 146 14 36 chr9 89021681 89021871 -53249573 + MSTC LTR MaLR 1 194 -234 2243 91 3 16 chr9 89021871 89022180 -53249264 - AluSx SINE Alu -5 307 3 2472 146 14 36 chr9 89022180 89022427 -53249017 + MSTC LTR MaLR 194 428 0 2160 106 0 0 chr9 89022503 89022796 -53248648 + AluSg SINE Alu 1 293 -17 1008 202 75 0 chr9 89022815 89023043 -53248401 + L1MB3 LINE L1 5938 6182 -1 1968 91 14 0 chr9 89024870 89025187 -53246257 + AluSx SINE Alu 6 326 0 21 0 0 0 chr9 89025588 89025609 -53245835 + AT_rich Low_complexity Low_complexity 1 21 0 1342 167 94 18 chr9 89027008 89027284 -53244160 + AluJb SINE Alu 1 297 -15 318 317 120 53 chr9 89028044 89028328 -53243116 - L1ME LINE L1 -297 5824 5522 526 233 38 25 chr9 89030953 89031112 -53240332 - MLT1G3 LTR MaLR -191 339 179 295 333 124 17 chr9 89031320 89031497 -53239947 - L2 LINE L2 0 3272 3077 2324 217 45 50 chr9 89032345 89032862 -53238582 + L1MCa LINE L1 1 516 -5910 1791 119 0 116 chr9 89032862 89033215 -53238229 - AluSx SINE Alu 0 312 1 2324 217 45 50 chr9 89033215 89033315 -53238129 + L1MCa LINE L1 516 615 -5811 2017 224 26 11 chr9 89033319 89033784 -53237660 + L1MCa LINE L1 575 1046 -5380 2324 54 17 3 chr9 89033788 89034084 -53237360 + AluY SINE Alu 1 300 -11 1676 11 0 0 chr9 89034789 89034974 -53236470 + L1PA3 LINE L1 5966 6150 -5 288 53 0 0 chr9 89034981 89035019 -53236425 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 2174 115 0 0 chr9 89036124 89036474 -53234970 + AluSp SINE Alu 1 313 0 195 356 39 0 chr9 89037013 89037117 -53234327 + MIR SINE MIR 88 195 -67 1316 242 10 3 chr9 89037165 89037463 -53233981 + L1MB2 LINE L1 5783 6082 -89 1487 114 103 20 chr9 89037733 89038129 -53233315 + SVA Other Other 438 866 -520 6666 55 6 62 chr9 89038152 89039156 -53232288 + SVA Other Other 439 1386 0 187 253 133 48 chr9 89039664 89039747 -53231697 - L2 LINE L2 -492 2822 2733 832 140 98 147 chr9 89040316 89040581 -53230863 - L1MA8 LINE L1 0 6291 6040 235 293 109 14 chr9 89040722 89040869 -53230575 - L1ME LINE L1 -473 5648 5488 1053 238 59 91 chr9 89041812 89041909 -53229535 - MLT2C2 LTR ERVL 0 464 365 2209 94 3 0 chr9 89041909 89042208 -53229236 + AluY SINE Alu 1 300 -11 1053 238 59 91 chr9 89042208 89042584 -53228860 - MLT2C2 LTR ERVL -99 365 6 1579 183 65 0 chr9 89042592 89042915 -53228529 - ERVL-C2 LTR ERVL -5 5759 5416 1182 252 147 34 chr9 89042993 89043346 -53228098 + MLT1F1 LTR MaLR 75 467 -100 278 250 0 0 chr9 89043891 89043951 -53227493 - L3 LINE CR1 -872 705 646 247 161 18 36 chr9 89045146 89045202 -53226242 + GA-rich Low_complexity Low_complexity 2 56 0 229 151 38 19 chr9 89046343 89046396 -53225048 - L1MC4a LINE L1 -339 7469 7416 327 143 0 0 chr9 89046495 89046544 -53224900 + (GGGGA)n Simple_repeat Simple_repeat 4 52 0 194 268 130 32 chr9 89047050 89047173 -53224271 - L3 LINE CR1 -212 1365 1231 1138 141 10 0 chr9 89047513 89047711 -53223733 + L1MB3 LINE L1 5981 6180 -3 2019 108 4 0 chr9 89047782 89048093 -53223351 + AluSp SINE Alu 6 317 0 393 350 28 6 chr9 89050038 89050218 -53221226 - MIR SINE MIR -66 196 13 234 218 92 35 chr9 89050239 89050326 -53221118 + L2 LINE L2 3222 3313 0 2240 109 3 0 chr9 89052463 89052774 -53218670 - AluSx SINE Alu 0 312 1 198 71 0 0 chr9 89053034 89053062 -53218382 + (TC)n Simple_repeat Simple_repeat 2 29 0 215 292 14 28 chr9 89053643 89053715 -53217729 - MIR SINE MIR -110 152 82 2499 195 18 2 chr9 89054218 89054720 -53216724 - L1MA8 LINE L1 -239 6052 5543 2301 73 3 3 chr9 89055058 89055345 -53216099 + AluSc SINE Alu 1 287 -22 407 284 50 14 chr9 89055371 89055512 -53215932 - MIR SINE MIR -56 206 61 1944 108 0 4 chr9 89056099 89056357 -53215087 + AluSq SINE Alu 28 284 -29 243 270 14 0 chr9 89057839 89057913 -53213531 - MER116 DNA Mariner 0 80 6 5171 161 17 41 chr9 89059278 89060256 -53211188 + LTR5 LTR ERVK 1 955 -14 220 282 35 56 chr9 89060381 89060523 -53210921 - MIR SINE MIR -50 212 74 713 248 0 0 chr9 89061146 89061291 -53210153 + FRAM SINE Alu 8 152 -24 624 174 0 0 chr9 89062026 89062124 -53209320 - Tigger3b DNA MER2_type -32 1209 1112 208 263 105 11 chr9 89062129 89062224 -53209220 + L2 LINE L2 3169 3272 0 2219 202 38 48 chr9 89063311 89063740 -53207704 + L1MB7 LINE L1 5592 6016 -168 2413 158 38 19 chr9 89063740 89064159 -53207285 + MSTC LTR MaLR 2 428 0 2219 202 38 48 chr9 89064159 89064311 -53207133 + L1MB7 LINE L1 6016 6168 -16 4032 171 26 24 chr9 89064324 89065086 -53206358 + Tigger3b DNA MER2_type 1 767 -2261 2046 142 0 10 chr9 89065086 89065382 -53206062 - AluSx SINE Alu -19 293 1 4032 171 26 24 chr9 89065382 89065419 -53206025 + Tigger3b DNA MER2_type 767 802 -429 3417 106 2 6 chr9 89065431 89065905 -53205539 + MER9 LTR ERVK 40 511 0 2414 166 11 40 chr9 89065905 89066356 -53205088 + Tigger3b DNA MER2_type 795 1232 0 319 200 19 95 chr9 89066606 89066667 -53204777 - MIR SINE MIR -37 225 174 912 215 16 0 chr9 89066667 89066853 -53204591 - MER5A DNA MER1_type 0 189 1 319 200 19 95 chr9 89066853 89066896 -53204548 - MIR SINE MIR -88 174 129 2302 124 21 12 chr9 89066980 89067311 -53204133 + MER1B DNA MER1_type 6 339 0 930 239 74 41 chr9 89067759 89068149 -53203295 - LTR56 LTR ERV1 -23 422 20 518 261 125 11 chr9 89068420 89068604 -53202840 + MIR SINE MIR 34 238 -24 2205 122 0 0 chr9 89070033 89070342 -53201102 + AluSx SINE Alu 1 309 0 2250 102 0 0 chr9 89070385 89070760 -53200684 + AluSq SINE Alu 1 375 0 23 0 0 0 chr9 89072857 89072880 -53198564 + AT_rich Low_complexity Low_complexity 1 23 0 1582 122 5 0 chr9 89074660 89074882 -53196562 + AluSq SINE Alu 1 223 -90 1203 216 28 0 chr9 89075578 89075833 -53195611 + L1PA16 LINE L1 5903 6164 -2 5611 134 15 0 chr9 89075867 89076755 -53194689 + L1PA16 LINE L1 5231 6131 -35 337 309 83 11 chr9 89078822 89079003 -53192441 - Charlie8 DNA MER1_type -2134 283 90 238 239 123 39 chr9 89079322 89079452 -53191992 + L2 LINE L2 2578 2718 -596 506 165 157 9 chr9 89079895 89080010 -53191434 - MER58A DNA MER1_type 0 167 36 271 311 10 19 chr9 89080075 89080178 -53191266 + L2 LINE L2 3212 3313 0 3903 117 8 34 chr9 89080810 89081204 -53190240 - LTR43 LTR ERV1 0 602 228 2115 143 0 6 chr9 89081204 89081518 -53189926 - AluSx SINE Alu 0 312 1 3903 117 8 34 chr9 89081518 89081741 -53189703 - LTR43 LTR ERV1 -374 228 1 541 204 124 15 chr9 89081911 89082048 -53189396 + MER63A DNA MER1_type 59 210 0 254 202 42 79 chr9 89082543 89082694 -53188750 + MER20 DNA MER1_type 1 97 -122 1380 181 40 40 chr9 89083256 89083588 -53187856 + L1MA8 LINE L1 5731 6054 -237 1928 133 34 7 chr9 89083903 89084219 -53187225 + AluSq SINE Alu 1 313 0 2160 143 42 36 chr9 89084416 89084801 -53186643 + MER61D LTR ERV1 114 500 -1 1575 183 39 7 chr9 89085093 89085377 -53186067 - AluJb SINE Alu -19 293 1 1107 122 0 0 chr9 89085378 89085534 -53185910 - AluSg/x SINE Alu -5 305 150 248 146 0 0 chr9 89085534 89085575 -53185869 - MER51A LTR ERV1 -265 369 329 * 1967 107 14 4 chr9 89085574 89085855 -53185589 + MER51A LTR ERV1 290 573 -61 1065 253 63 34 chr9 89085867 89086247 -53185197 + MLT1E2 LTR MaLR 4 394 -232 281 293 36 36 chr9 89086357 89086497 -53184947 - L1MC/D LINE L1 -2048 5760 5621 207 246 29 0 chr9 89086648 89086717 -53184727 + (TTA)n Simple_repeat Simple_repeat 2 72 0 291 250 0 60 chr9 89086898 89086998 -53184446 + MIR SINE MIR 82 175 -87 381 178 14 0 chr9 89088450 89088523 -53182921 + MER116 DNA Mariner 7 80 0 1411 183 45 58 chr9 89089782 89090093 -53181351 + AluJo SINE Alu 1 307 -5 265 235 35 12 chr9 89090337 89090422 -53181022 - L1MC4a LINE L1 -1859 5949 5863 506 271 0 0 chr9 89090870 89090992 -53180452 + MIR SINE MIR 74 195 -67 450 285 51 56 chr9 89091091 89091305 -53180139 - MLT1G1 LTR MaLR -282 300 36 3965 171 15 7 chr9 89091306 89092440 -53179004 + L1MA8 LINE L1 4851 5993 -298 25 31 0 0 chr9 89092575 89092607 -53178837 + AT_rich Low_complexity Low_complexity 1 32 0 2197 108 11 0 chr9 89092733 89093019 -53178425 + AluSq SINE Alu 2 290 -23 292 161 62 12 chr9 89093276 89093357 -53178087 + AluS SINE Alu 1 85 -218 1980 72 0 16 chr9 89093388 89093661 -53177783 + AluY SINE Alu 50 311 0 6735 85 10 0 chr9 89093666 89094769 -53176675 + L1PA10 LINE L1 5053 6164 -4 2254 116 0 16 chr9 89094794 89095112 -53176332 + AluSq SINE Alu 1 313 0 2221 175 24 14 chr9 89095112 89095534 -53175910 + L1MC1 LINE L1 5266 5691 -642 2999 121 9 5 chr9 89095536 89095974 -53175470 - MER83 LTR ERV1 -7 441 2 3292 162 35 19 chr9 89095974 89096610 -53174834 + L1MC1 LINE L1 5682 6327 -6 627 199 27 14 chr9 89096723 89096869 -53174575 + L1ME2 LINE L1 6001 6148 -16 200 321 18 9 chr9 89097416 89097525 -53173919 + A-rich Low_complexity Low_complexity 2 111 0 5084 92 15 4 chr9 89098664 89099348 -53172096 + LTR8 LTR ERV1 1 691 0 7344 52 3 2 chr9 89099839 89100846 -53170598 + L1PA5 LINE L1 5147 6154 0 549 75 12 12 chr9 89100952 89101032 -53170412 + MADE1 DNA Mariner 1 80 0 570 168 0 21 chr9 89101139 89101234 -53170210 - AluJb SINE Alu -18 294 202 281 191 0 0 chr9 89101234 89101276 -53170168 - Alu SINE Alu -259 42 1 7192 109 16 30 chr9 89101659 89102605 -53168839 - L1MA3 LINE L1 0 6305 5371 2116 116 0 27 chr9 89102605 89102933 -53168511 - AluSx SINE Alu 0 320 1 7192 109 16 30 chr9 89102933 89103461 -53167983 - L1MA3 LINE L1 -934 5371 4837 315 250 19 9 chr9 89103723 89103831 -53167613 - MLT1K LTR MaLR -115 473 365 210 122 49 0 chr9 89104226 89104267 -53167177 + A-rich Low_complexity Low_complexity 2 44 0 479 255 107 103 chr9 89104609 89105028 -53166416 + MER34 LTR ERV1 23 443 -99 1804 76 0 9 chr9 89305028 89305277 -52966167 + AluSc SINE Alu 59 305 0 2798 80 3 13 chr9 89305581 89305958 -52965486 - LTR19B-int LTR ERV1 -3618 1968 1596 * 5845 136 33 3 chr9 89305956 89306862 -52964582 - LTR19B-int LTR ERV1 -6786 933 1 3965 102 47 40 chr9 89306862 89306976 -52964468 - LTR19B LTR ERV1 0 580 468 2709 26 0 3 chr9 89306976 89307278 -52964166 - AluY SINE Alu -10 301 1 3965 102 47 40 chr9 89307278 89307739 -52963705 - LTR19B LTR ERV1 -112 468 1 377 186 103 21 chr9 89307794 89307891 -52963553 + MLT1H LTR MaLR 445 549 0 508 271 132 47 chr9 89308088 89308579 -52962865 + L1ME LINE L1 3572 4104 -2042 559 223 33 70 chr9 89308674 89308916 -52962528 + L1ME LINE L1 4463 4695 -1451 254 272 35 35 chr9 89308930 89309044 -52962400 + L1ME LINE L1 4784 4897 -1249 576 280 93 34 chr9 89309372 89309444 -52962000 + L1ME LINE L1 5325 5391 -730 2186 112 7 3 chr9 89309444 89309740 -52961704 + AluSx SINE Alu 1 297 -15 576 280 93 34 chr9 89309740 89310016 -52961428 + L1ME LINE L1 5391 5689 -432 1859 167 3 6 chr9 89310354 89310666 -52960778 + AluJb SINE Alu 1 311 -1 577 174 174 8 chr9 89311720 89311852 -52959592 + Charlie4a DNA MER1_type 1 154 -354 480 219 27 87 chr9 89311852 89312009 -52959435 + Charlie4a DNA MER1_type 197 343 -1618 2147 123 3 7 chr9 89312009 89312309 -52959135 - AluSx SINE Alu -13 299 1 480 219 27 87 chr9 89312309 89312334 -52959110 + Charlie4a DNA MER1_type 343 368 -140 1552 182 66 68 chr9 89312336 89312716 -52958728 + MLT1B LTR MaLR 1 379 -11 642 232 28 0 chr9 89312722 89312864 -52958580 + Charlie4a DNA MER1_type 363 508 0 250 276 4 7 chr9 89312942 89313019 -52958425 + MLT1J2 LTR MaLR 71 126 -324 289 273 70 35 chr9 89313184 89313327 -52958117 + MLT1J LTR MaLR 362 509 -2 1882 117 0 106 chr9 89313563 89313904 -52957540 - AluJb SINE Alu -7 305 1 468 348 70 22 chr9 89314197 89314427 -52957017 + MIR SINE MIR 17 257 -5 2160 102 3 3 chr9 89314438 89314750 -52956694 - AluSp SINE Alu 0 313 2 1440 96 5 0 chr9 89314805 89314993 -52956451 - AluSg/x SINE Alu -9 301 113 2252 99 3 7 chr9 89316751 89317045 -52954399 - AluSg SINE Alu -17 293 1 2216 121 3 0 chr9 89318049 89318355 -52953089 - AluSx SINE Alu -5 307 1 270 169 34 0 chr9 89320245 89320304 -52951140 - L2 LINE L2 -249 3064 3004 222 241 203 13 chr9 89322269 89322370 -52949074 - MER5A DNA MER1_type -26 152 29 26 30 0 0 chr9 89322864 89322897 -52948547 + AT_rich Low_complexity Low_complexity 1 33 0 511 262 141 59 chr9 89323564 89323820 -52947624 + MLT1J LTR MaLR 158 434 -77 403 279 37 22 chr9 89325549 89325685 -52945759 - MER46C DNA MER2_type -13 325 188 241 143 0 79 chr9 89326940 89327003 -52944441 + (CCCCCG)n Simple_repeat Simple_repeat 3 60 0 24 0 0 0 chr9 89327017 89327041 -52944403 + GC_rich Low_complexity Low_complexity 1 24 0 669 134 15 22 chr9 89327974 89328108 -52943336 + FLAM_A SINE Alu 1 133 0 231 268 31 21 chr9 89328305 89328402 -52943042 + L1ME4a LINE L1 5956 6053 -68 448 130 24 69 chr9 89328623 89328735 -52942709 - MLT1A2 LTR MaLR -221 153 60 1247 99 90 30 chr9 89328846 89329015 -52942429 - AluSx SINE Alu -99 213 29 4236 101 13 0 chr9 89329015 89329561 -52941883 + MER41A LTR ERV1 2 554 0 1247 99 90 30 chr9 89329561 89329592 -52941852 - AluSx SINE Alu -283 29 1 278 280 21 32 chr9 89329657 89329750 -52941694 + L2 LINE L2 3005 3096 -217 613 66 0 0 chr9 89329849 89329925 -52941519 + Alu SINE Alu 224 299 -13 362 244 78 0 chr9 89329927 89330017 -52941427 + L2 LINE L2 3155 3251 -21 275 195 6 42 chr9 89330182 89330267 -52941177 - Tigger5 DNA MER2_type -1 2322 1 352 251 72 54 chr9 89330291 89330316 -52941128 - L1MC5 LINE L1 -77 7884 7861 1194 157 76 18 chr9 89330316 89330539 -52940905 + MER46A DNA MER2_type 1 236 0 352 251 72 54 chr9 89330539 89330680 -52940764 - L1MC5 LINE L1 -100 7861 7715 2229 107 3 0 chr9 89330877 89331176 -52940268 - AluSp SINE Alu -13 300 1 320 296 72 20 chr9 89331258 89331410 -52940034 - L1MC5 LINE L1 -470 7491 7332 363 228 13 0 chr9 89331444 89331523 -52939921 - MIR SINE MIR -182 80 1 1745 179 135 18 chr9 89331699 89331729 -52939715 + MLT1D LTR MaLR 1 26 -479 1309 189 131 49 chr9 89331729 89332095 -52939349 - MSTD LTR MaLR 0 396 1 1745 179 135 18 chr9 89332095 89332450 -52938994 + MLT1D LTR MaLR 26 431 -74 467 202 50 25 chr9 89332485 89332604 -52938840 - L1M4 LINE L1 -2109 4037 3916 553 289 58 36 chr9 89332730 89333230 -52938214 + L1MEd LINE L1 922 1523 -967 716 276 42 14 chr9 89333582 89333799 -52937645 + MLT1H LTR MaLR 22 244 -305 3999 114 52 2 chr9 89333879 89334431 -52937013 - LTR19B LTR ERV1 0 580 1 1590 108 17 4 chr9 89334432 89334664 -52936780 - HERVFH19I LTR ERV1 -1 7718 7484 * 8607 190 46 49 chr9 89334647 89335435 -52936009 - HUERS-P3b LTR ERV1 -332 6894 6105 5504 107 0 52 chr9 89335435 89336172 -52935272 - L1PA3 LINE L1 0 6155 5457 8607 190 46 49 chr9 89336172 89337348 -52934096 - HUERS-P3b LTR ERV1 -1121 6105 4927 216 0 0 0 chr9 89337348 89337372 -52934072 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 8607 190 46 49 chr9 89337372 89337909 -52933535 - HUERS-P3b LTR ERV1 -2299 4927 4500 2378 71 0 3 chr9 89337909 89338229 -52933215 - AluY SINE Alu 0 311 1 8607 190 46 49 chr9 89338229 89338287 -52933157 - HUERS-P3b LTR ERV1 -2726 4500 4443 2261 80 3 3 chr9 89338483 89338771 -52932673 - AluSg1 SINE Alu -21 288 1 2217 108 3 3 chr9 89338918 89339225 -52932219 - AluSg SINE Alu -3 307 1 210 71 0 0 chr9 89340076 89340104 -52931340 + (T)n Simple_repeat Simple_repeat 1 28 0 1169 81 0 7 chr9 89340549 89340697 -52930747 - AluSg SINE Alu -163 147 1 1575 242 112 83 chr9 89341071 89341785 -52929659 - MER21B LTR ERV1 -109 754 20 684 206 106 118 chr9 89341831 89342134 -52929310 - MSTD LTR MaLR -4 392 94 2321 73 0 32 chr9 89342134 89342447 -52928997 + AluY SINE Alu 1 303 -8 684 206 106 118 chr9 89342447 89342540 -52928904 - MSTD LTR MaLR -302 94 1 257 295 76 9 chr9 89342574 89342679 -52928765 + HERVL LTR ERVL 4155 4266 -1388 267 323 61 0 chr9 89343287 89343386 -52928058 + L2 LINE L2 3168 3272 0 408 40 0 0 chr9 89344703 89344753 -52926691 + (TG)n Simple_repeat Simple_repeat 1 50 0 1750 141 8 0 chr9 89344753 89345001 -52926443 - AluSq SINE Alu -33 280 31 4531 126 287 89 chr9 89345004 89346414 -52925030 - pTR5 LTR ERV1 0 2438 750 250 122 122 0 chr9 89346414 89346455 -52924989 - AluSq SINE Alu -257 46 1 1626 218 81 19 chr9 89346479 89346851 -52924593 - MSTD LTR MaLR -1 395 1 480 292 71 30 chr9 89346865 89347033 -52924411 - MER5A DNA MER1_type -8 181 7 1861 176 13 7 chr9 89347727 89348033 -52923411 + AluJb SINE Alu 5 312 0 23 0 0 0 chr9 89348319 89348342 -52923102 + AT_rich Low_complexity Low_complexity 1 23 0 430 257 26 18 chr9 89348456 89348569 -52922875 + MER81 DNA DNA 1 114 0 266 335 77 66 chr9 89348676 89349091 -52922353 - L2 LINE L2 -62 3251 2700 338 98 20 0 chr9 89349585 89349636 -52921808 - AluSq SINE Alu -250 52 1 521 215 41 8 chr9 89349638 89349759 -52921685 + MER63 DNA MER1_type 1 751 -85 22 0 0 0 chr9 89349986 89350008 -52921436 + AT_rich Low_complexity Low_complexity 1 22 0 221 239 0 30 chr9 89350417 89350484 -52920960 + A-rich Low_complexity Low_complexity 1 65 0 14583 211 48 22 chr9 89350520 89351225 -52920219 + L1MA8 LINE L1 2 687 -5668 1972 128 73 25 chr9 89351225 89351583 -52919861 + THE1C LTR MaLR 1 375 0 11255 102 42 8 chr9 89351583 89353111 -52918333 + THE1C-int LTR MaLR 1 1580 0 2087 134 62 20 chr9 89353111 89353469 -52917975 + THE1C LTR MaLR 1 373 -2 14583 211 48 22 chr9 89353469 89353949 -52917495 + L1MA8 LINE L1 687 1153 -5202 1803 175 7 0 chr9 89353949 89354241 -52917203 - AluJb SINE Alu -18 294 1 14583 211 48 22 chr9 89354241 89355947 -52915497 + L1MA8 LINE L1 1153 2814 -3541 2014 151 3 10 chr9 89355947 89356250 -52915194 + AluSx SINE Alu 1 301 -11 2107 106 40 7 chr9 89356250 89356552 -52914892 + AluSx SINE Alu 1 312 0 14583 211 48 22 chr9 89356251 89359129 -52912315 + L1MA8 LINE L1 2814 5617 -738 213 65 0 0 chr9 89359129 89359160 -52912284 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 14583 211 48 22 chr9 89359160 89359288 -52912156 + L1MA8 LINE L1 5617 5740 -615 1549 208 0 14 chr9 89359288 89359581 -52911863 + AluJo SINE Alu 5 293 -19 14583 211 48 22 chr9 89359581 89360360 -52911084 + L1MA8 LINE L1 5740 6204 -151 777 111 8 0 chr9 89360361 89360478 -52910966 + L1PB2 LINE L1 5361 5478 -673 1912 140 11 0 chr9 89360482 89360754 -52910690 + AluSx SINE Alu 1 275 -37 203 0 0 36 chr9 89360758 89360786 -52910658 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4788 101 12 8 chr9 89360827 89361498 -52909946 + L1PB2 LINE L1 5468 6141 -10 983 111 28 124 chr9 89361511 89361647 -52909797 + L1MA9 LINE L1 6117 6226 -86 1825 138 40 0 chr9 89361647 89361922 -52909522 + AluJb SINE Alu 1 286 -26 983 111 28 124 chr9 89361922 89362002 -52909442 + L1MA9 LINE L1 6226 6312 0 754 134 70 7 chr9 89362139 89362281 -52909163 + MER5A DNA MER1_type 13 163 -26 24 32 0 0 chr9 89362400 89362431 -52909013 + AT_rich Low_complexity Low_complexity 1 31 0 1926 179 26 0 chr9 89363541 89363882 -52907562 - L1MB3 LINE L1 -18 6165 5816 1398 145 18 0 chr9 89363897 89364118 -52907326 - AluJb SINE Alu -16 296 72 1836 190 50 28 chr9 89364118 89364576 -52906868 - L1MB3 LINE L1 -815 5331 4864 472 263 51 0 chr9 89364781 89364899 -52906545 - L2 LINE L2 -2 3311 3188 37 62 0 0 chr9 89365002 89365067 -52906377 + AT_rich Low_complexity Low_complexity 1 65 0 682 193 0 57 chr9 89365116 89365256 -52906188 - FLAM_A SINE Alu -1 132 1 233 295 0 0 chr9 89365842 89365903 -52905541 + MIR SINE MIR 82 142 -120 286 225 138 25 chr9 89365952 89366032 -52905412 - MLT1G1 LTR MaLR -60 535 447 510 182 168 7 chr9 89366067 89366210 -52905234 - MLT1G1 LTR MaLR -227 368 203 454 275 34 32 chr9 89366632 89366813 -52904631 + MIR SINE MIR 41 219 -43 21 0 0 0 chr9 89367519 89367540 -52903904 + AT_rich Low_complexity Low_complexity 1 21 0 1815 206 39 31 chr9 89367658 89368098 -52903346 - L1M4 LINE L1 -385 5799 5364 1657 146 32 58 chr9 89368098 89368275 -52903169 - AluJo SINE Alu -11 301 121 1719 178 3 3 chr9 89368275 89368561 -52902883 + AluJb SINE Alu 1 286 -26 315 65 0 0 chr9 89368564 89368610 -52902834 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1657 146 32 58 chr9 89368610 89368737 -52902707 - AluJo SINE Alu -193 119 1 1815 206 39 31 chr9 89368737 89369684 -52901760 - L1M4 LINE L1 -820 5364 4358 702 221 33 62 chr9 89369694 89369938 -52901506 - MLT1D LTR MaLR -176 329 93 395 91 70 21 chr9 89370047 89370190 -52901254 + (CA)n Simple_repeat Simple_repeat 1 150 0 554 73 45 45 chr9 89370202 89370381 -52901063 + (CA)n Simple_repeat Simple_repeat 1 179 0 340 145 64 17 chr9 89370464 89370636 -52900808 + (CA)n Simple_repeat Simple_repeat 1 180 0 441 107 53 41 chr9 89370661 89370911 -52900533 + (CA)n Simple_repeat Simple_repeat 1 253 0 382 130 45 26 chr9 89370926 89371080 -52900364 + (CA)n Simple_repeat Simple_repeat 1 157 0 320 173 40 17 chr9 89371119 89371292 -52900152 + (CA)n Simple_repeat Simple_repeat 1 177 0 431 234 0 0 chr9 89372211 89372288 -52899156 + MLT1J LTR MaLR 73 149 -362 277 218 55 91 chr9 89372415 89372525 -52898919 + MLT1J LTR MaLR 406 511 0 461 17 17 0 chr9 89373011 89373069 -52898375 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 492 32 0 0 chr9 89373501 89373563 -52897881 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 2111 191 10 72 chr9 89374692 89375206 -52896238 + MER31A LTR ERV1 1 482 -3 2081 105 28 0 chr9 89375642 89375927 -52895517 - AluSx SINE Alu -14 298 6 1059 234 100 121 chr9 89376369 89377062 -52894382 + LTR8A LTR ERV1 1 678 -49 21 0 0 0 chr9 89377174 89377195 -52894249 + AT_rich Low_complexity Low_complexity 1 21 0 1913 180 9 56 chr9 89377301 89377688 -52893756 + MLT2D LTR ERVL 6 373 -41 249 33 0 0 chr9 89377688 89377718 -52893726 + (CA)n Simple_repeat Simple_repeat 2 31 0 1913 180 9 56 chr9 89377718 89377757 -52893687 + MLT2D LTR ERVL 373 412 -2 2339 92 0 0 chr9 89378580 89378872 -52892572 - AluSc SINE Alu -17 292 1 607 258 74 55 chr9 89379522 89379848 -52891596 + MLT1K LTR MaLR 210 541 -47 24 41 0 20 chr9 89379848 89379873 -52891571 + AT_rich Low_complexity Low_complexity 1 26 -22 3099 150 8 6 chr9 89379873 89380366 -52891078 - L1MB3 LINE L1 -2 6181 5688 24 41 0 20 chr9 89380366 89380389 -52891055 + AT_rich Low_complexity Low_complexity 26 48 0 4332 134 37 17 chr9 89380405 89381113 -52890331 + MER50 LTR ERV1 1 722 -12 3868 137 36 24 chr9 89381160 89381830 -52889614 + MER4D LTR ERV1 1 678 -225 581 216 47 0 chr9 89381818 89381832 -52889612 + MER4E LTR ERV1 612 624 -142 * 1755 112 27 0 chr9 89381832 89382090 -52889354 + AluSg SINE Alu 44 308 -2 581 216 47 0 chr9 89382090 89382223 -52889221 + MER4E LTR ERV1 624 766 0 698 140 52 37 chr9 89382223 89382359 -52889085 - L1MD1 LINE L1 -41 6201 6064 4477 171 49 34 chr9 89382400 89382502 -52888942 - L1MD2 LINE L1 -144 6215 6116 4030 104 24 2 chr9 89382502 89383042 -52888402 - MER41A LTR ERV1 0 554 3 4477 171 49 34 chr9 89383042 89383944 -52887500 - L1MD2 LINE L1 -243 6116 5198 229 228 122 76 chr9 89384415 89384652 -52886792 + L1M4 LINE L1 2114 2361 -3785 542 260 240 5 chr9 89384885 89385081 -52886363 - MIR SINE MIR 0 262 21 448 309 67 24 chr9 89385083 89385543 -52885901 + L1M4 LINE L1 3032 3511 -2635 498 264 7 7 chr9 89385692 89385712 -52885732 - L1MA10 LINE L1 0 6334 6315 3040 213 79 35 chr9 89385712 89386531 -52884913 - L1ME1 LINE L1 -12 6154 5300 415 216 21 0 chr9 89386531 89386628 -52884816 + MLT1K LTR MaLR 492 590 0 1631 197 33 25 chr9 89386863 89387228 -52884216 - MLT1A2 LTR MaLR 0 374 7 1764 153 73 0 chr9 89388900 89389200 -52882244 - MER7A DNA MER2_type -26 320 1 36 62 0 0 chr9 89390902 89390966 -52880478 + AT_rich Low_complexity Low_complexity 1 64 0 421 288 51 0 chr9 89391144 89391309 -52880135 + MIR SINE MIR 15 190 -65 2806 220 73 30 chr9 89391310 89392617 -52878827 - L1MD2 LINE L1 -487 6266 4898 2071 128 3 0 chr9 89392617 89392906 -52878538 - AluSq SINE Alu -23 290 1 2806 220 73 30 chr9 89392906 89392941 -52878503 - L1MD2 LINE L1 -1855 4898 4866 4078 228 57 49 chr9 89392974 89394415 -52877029 - L1MD2 LINE L1 -1810 4730 3278 4570 212 53 71 chr9 89394421 89394664 -52876780 - L1MD2 LINE L1 -3694 2846 2600 2156 131 3 3 chr9 89394664 89394976 -52876468 - AluSx SINE Alu 0 312 1 4570 212 53 71 chr9 89394976 89396799 -52874645 - L1MD2 LINE L1 -3940 2600 808 1027 260 14 21 chr9 89397148 89397433 -52874011 - L1MD2 LINE L1 -6257 283 1 768 282 69 53 chr9 89399302 89399734 -52871710 + MLT1K LTR MaLR 149 587 -1 1735 203 49 25 chr9 89399947 89400312 -52871132 + MLT1A2 LTR MaLR 1 374 0 808 236 66 17 chr9 89400887 89401128 -52870316 - MER58B DNA MER1_type -15 326 74 1485 293 139 25 chr9 89401141 89402007 -52869437 - HAL1 LINE L1 -1532 975 12 293 292 129 18 chr9 89402265 89402436 -52869008 + MLT1J LTR MaLR 109 298 -213 225 289 44 53 chr9 89402508 89402622 -52868822 + MLT1J LTR MaLR 397 509 -2 1468 159 106 5 chr9 89403567 89403860 -52867584 - MLT1B LTR MaLR 0 374 52 204 145 43 34 chr9 89403881 89403998 -52867446 + (TG)n Simple_repeat Simple_repeat 2 119 0 2256 115 0 0 chr9 89406861 89407166 -52864278 - AluSx SINE Alu -6 306 2 3559 148 98 9 chr9 89407796 89408472 -52862972 - L1MB4 LINE L1 0 6180 5445 3958 166 53 25 chr9 89410274 89410448 -52860996 - L1MD1 LINE L1 -26 6216 6048 1627 81 5 5 chr9 89410448 89410657 -52860787 - AluY SINE Alu -17 294 86 3958 166 53 25 chr9 89410657 89411411 -52860033 - L1MD1 LINE L1 -194 6048 5194 2263 93 7 7 chr9 89411616 89411916 -52859528 - AluSg1 SINE Alu -9 300 1 211 221 29 29 chr9 89412055 89412123 -52859321 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 1708 234 24 31 chr9 89412156 89412501 -52858943 - LTR40c LTR ERVL -44 421 78 2356 98 3 0 chr9 89412501 89412797 -52858647 - AluSq SINE Alu -16 297 1 1708 234 24 31 chr9 89412797 89412875 -52858569 - LTR40c LTR ERVL -387 78 1 2349 95 3 0 chr9 89413050 89413354 -52858090 - AluY SINE Alu -2 309 5 24 0 0 0 chr9 89413404 89413428 -52858016 + AT_rich Low_complexity Low_complexity 1 24 0 518 234 88 16 chr9 89413594 89413786 -52857658 + MIR SINE MIR 1 206 -56 639 123 19 9 chr9 89413804 89413910 -52857534 + MLT1A1 LTR MaLR 1 107 -258 7251 98 193 82 chr9 89413913 89415440 -52856004 - pTR5 LTR ERV1 0 2438 743 1275 173 43 16 chr9 89415440 89415695 -52855749 + MLT1A1 LTR MaLR 104 365 0 2052 139 49 27 chr9 89415946 89416313 -52855131 - THE1C LTR MaLR 0 375 1 527 271 48 48 chr9 89417362 89417572 -52853872 + MER63A DNA MER1_type 1 210 0 384 139 89 25 chr9 89417747 89417826 -52853618 + LTR8 LTR ERV1 1 84 -607 809 226 40 6 chr9 89417933 89418110 -52853334 - LTR42 LTR ERVL -312 183 1 1242 209 65 19 chr9 89418110 89418467 -52852977 - MLT2B1 LTR ERVL -52 463 60 1630 156 45 7 chr9 89419019 89419327 -52852117 - L1MA9 LINE L1 -30 6282 5963 529 16 0 0 chr9 89419544 89419608 -52851836 + L1PA3 LINE L1 6089 6152 -3 23 0 0 0 chr9 89419608 89419631 -52851813 + AT_rich Low_complexity Low_complexity 1 23 0 1463 151 24 12 chr9 89419681 89419932 -52851512 + MLT1A1 LTR MaLR 112 365 0 2067 110 104 24 chr9 89420112 89420449 -52850995 - THE1B LTR MaLR 0 364 1 447 269 99 19 chr9 89420846 89421058 -52850386 + L1MC4 LINE L1 7814 8042 0 2399 137 40 16 chr9 89421932 89422357 -52849087 - L1MA9 LINE L1 -428 5755 5321 216 67 0 0 chr9 89422359 89422389 -52849055 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 7564 29 0 15 chr9 89422389 89423820 -52847624 - L1PA4 LINE L1 -24 6131 4722 7467 203 32 94 chr9 89423817 89424469 -52846975 - L1MA9 LINE L1 -810 5336 4645 * 2430 139 3 3 chr9 89424469 89424842 -52846602 - L1PB3 LINE L1 0 6154 5782 7467 203 32 94 chr9 89424842 89425463 -52845981 - L1MA9 LINE L1 -1501 4645 3987 303 28 0 0 chr9 89425463 89425499 -52845945 + (TG)n Simple_repeat Simple_repeat 2 37 0 7467 203 32 94 chr9 89425499 89426078 -52845366 - L1MA9 LINE L1 -2159 3987 3670 2543 117 70 7 chr9 89426078 89426481 -52844963 + MSTA LTR MaLR 1 428 0 7467 203 32 94 chr9 89426481 89427086 -52844358 - L1MA9 LINE L1 -2476 3670 3029 5961 150 11 2 chr9 89427111 89428072 -52843372 - L1MA6 LINE L1 0 6300 5331 314 73 0 73 chr9 89428072 89428127 -52843317 + MSTB1 LTR MaLR 1 51 -381 558 193 118 0 chr9 89428131 89428250 -52843194 + AluJo SINE Alu 2 134 -178 2124 175 63 0 chr9 89428265 89428630 -52842814 + MSTB1 LTR MaLR 43 430 -2 6001 181 17 6 chr9 89428631 89429817 -52841627 - L1MA6 LINE L1 -810 5336 4138 3111 232 17 6 chr9 89429813 89430624 -52840820 - L1M4 LINE L1 -3105 3041 2222 * 797 241 0 73 chr9 89430683 89430874 -52840570 + MER8 DNA MER2_type 2 178 -61 630 218 41 0 chr9 89430918 89431088 -52840356 - Charlie4a DNA MER1_type -132 376 200 891 273 110 22 chr9 89431738 89432093 -52839351 + MLT1I LTR MaLR 16 401 -8 692 273 94 16 chr9 89433230 89433486 -52837958 - L1MB7 LINE L1 0 6184 5909 421 290 14 36 chr9 89433501 89433639 -52837805 - HAL1 LINE L1 -2095 412 278 711 224 117 0 chr9 89433670 89433849 -52837595 + MIR SINE MIR 33 232 -30 308 273 36 0 chr9 89434211 89434321 -52837123 + MER5A DNA MER1_type 74 187 -2 204 265 43 19 chr9 89434574 89434736 -52836708 + (TA)n Simple_repeat Simple_repeat 2 167 0 25 31 0 0 chr9 89434872 89434904 -52836540 + AT_rich Low_complexity Low_complexity 1 32 0 295 213 32 0 chr9 89434904 89434998 -52836446 + (TA)n Simple_repeat Simple_repeat 2 98 0 443 193 0 0 chr9 89435000 89435083 -52836361 - FRAM SINE Alu -26 150 68 270 338 113 12 chr9 89435393 89435633 -52835811 + L1ME LINE L1 5575 5838 -283 448 248 0 0 chr9 89436116 89436249 -52835195 + L1MA7 LINE L1 6159 6291 0 329 294 150 6 chr9 89436461 89436641 -52834803 + MIR SINE MIR 33 238 -24 539 273 111 71 chr9 89437845 89438296 -52833148 + LTR33 LTR ERVL 50 518 -3 2459 119 89 2 chr9 89438748 89439142 -52832302 - MSTA LTR MaLR 0 428 1 2485 138 38 40 chr9 89440255 89440480 -52830964 - MSTB LTR MaLR 0 426 202 657 0 0 0 chr9 89440480 89440553 -52830891 + (TTTTA)n Simple_repeat Simple_repeat 2 74 0 2107 105 7 0 chr9 89440558 89440844 -52830600 - AluSq SINE Alu -25 288 1 2485 138 38 40 chr9 89440844 89441039 -52830405 - MSTB LTR MaLR -228 198 1 827 155 42 12 chr9 89441380 89441548 -52829896 + MLT1D LTR MaLR 332 504 -1 201 74 0 0 chr9 89442492 89442519 -52828925 + (T)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr9 89443717 89443738 -52827706 + (T)n Simple_repeat Simple_repeat 1 21 0 201 182 0 0 chr9 89444207 89444240 -52827204 + T-rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr9 89444718 89444746 -52826698 + GC_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 89444871 89444901 -52826543 + GC_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr9 89447406 89447435 -52824009 + AT_rich Low_complexity Low_complexity 1 29 0 426 144 40 8 chr9 89449307 89449432 -52822012 + (CA)n Simple_repeat Simple_repeat 1 129 0 264 255 55 76 chr9 89449862 89450007 -52821437 + MIR3 SINE MIR 30 171 -37 588 93 0 0 chr9 89450469 89450566 -52820878 + (TG)n Simple_repeat Simple_repeat 1 97 0 1129 158 19 47 chr9 89452093 89452308 -52819136 + MER2 DNA MER2_type 1 209 -136 23 78 0 0 chr9 89452317 89452368 -52819076 + AT_rich Low_complexity Low_complexity 1 51 0 1903 159 3 0 chr9 89452422 89452712 -52818732 - AluJb SINE Alu -21 291 1 1605 180 110 61 chr9 89453931 89454420 -52817024 - MLT2B1 LTR ERVL -1 519 7 2327 82 7 0 chr9 89454600 89454892 -52816552 - AluSp SINE Alu -19 294 1 719 249 158 0 chr9 89455974 89456239 -52815205 + MER63B DNA MER1_type 1 307 -129 328 233 27 0 chr9 89456694 89456767 -52814677 - L2 LINE L2 -5 3308 3234 229 316 154 8 chr9 89457094 89457211 -52814233 - L2 LINE L2 -609 2705 2572 237 33 0 0 chr9 89457790 89457820 -52813624 + (CA)n Simple_repeat Simple_repeat 2 31 0 482 280 70 28 chr9 89457834 89458120 -52813324 - L1MC4a LINE L1 -1861 5947 5650 359 192 92 23 chr9 89458291 89458421 -52813023 - L1M4 LINE L1 -2154 3992 3854 243 307 129 51 chr9 89458424 89458802 -52812642 + L2 LINE L2 2694 3091 -181 1811 168 18 72 chr9 89458977 89459318 -52812126 + MLT1A1 LTR MaLR 1 320 -45 12714 22 0 0 chr9 89459318 89461481 -52809963 - L1PA2 LINE L1 0 6155 3993 1811 168 18 72 chr9 89461481 89461525 -52809919 + MLT1A1 LTR MaLR 320 365 0 2283 139 78 34 chr9 89461565 89461975 -52809469 - MSTA LTR MaLR 0 428 1 196 291 86 60 chr9 89462704 89462855 -52808589 - L2 LINE L2 -251 3062 2908 3647 61 11 9 chr9 89463100 89463543 -52807901 + MLT2A1 LTR ERVL 1 444 0 371 310 62 0 chr9 89463565 89463694 -52807750 - L3 LINE CR1 -258 1319 1183 322 284 62 49 chr9 89464185 89464410 -52807034 + L1MC4a LINE L1 5733 5960 -1848 * 2274 222 24 74 chr9 89464407 89465152 -52806292 + L1M4 LINE L1 2523 3229 -2917 1546 161 23 43 chr9 89465152 89465451 -52805993 + AluJo SINE Alu 3 295 -17 2274 222 24 74 chr9 89465451 89465490 -52805954 + L1M4 LINE L1 3229 3268 -2878 1305 214 92 46 chr9 89465499 89465867 -52805577 - MLT1D LTR MaLR 0 505 116 3871 180 53 48 chr9 89465867 89466646 -52804798 - LTR39 LTR ERV1 0 783 1 1305 214 92 46 chr9 89466646 89466670 -52804774 - MLT1D LTR MaLR -389 116 95 1563 218 50 32 chr9 89466686 89467062 -52804382 - MLT1F LTR MaLR -120 422 40 1306 103 4 103 chr9 89468758 89469011 -52802433 + MER30 DNA MER1_type 3 230 0 311 360 22 0 chr9 89469060 89469196 -52802248 + MIR SINE MIR 113 251 -11 267 143 143 66 chr9 89469773 89469864 -52801580 + L1ME4a LINE L1 6006 6103 -18 418 260 77 34 chr9 89469934 89470142 -52801302 - L1ME3 LINE L1 -1 6161 5945 260 225 45 0 chr9 89471154 89471243 -52800201 - L1ME4a LINE L1 -5 6116 6024 316 197 0 0 chr9 89471331 89471392 -52800052 - L1ME4a LINE L1 -267 5854 5794 300 145 0 14 chr9 89471386 89471455 -52799989 + L1MB7 LINE L1 5255 5322 -824 * 1590 186 93 9 chr9 89471467 89471801 -52799643 - MLT1A1 LTR MaLR 0 365 4 267 111 0 0 chr9 89471803 89471839 -52799605 + L1MB7 LINE L1 5330 5365 -818 1224 186 0 5 chr9 89471839 89472059 -52799385 + AluJb SINE Alu 84 302 -10 4514 158 16 29 chr9 89472059 89472805 -52798639 + L1MB7 LINE L1 5359 6246 -88 3167 193 20 0 chr9 89472805 89473344 -52798100 - MER44D DNA MER2_type 0 605 1 4514 158 16 29 chr9 89473344 89473432 -52798012 + L1MB7 LINE L1 6246 6334 0 218 333 32 24 chr9 89474141 89474264 -52797180 - MIR SINE MIR -119 143 20 189 171 29 0 chr9 89474432 89474467 -52796977 + MIR SINE MIR 218 253 -9 337 293 40 33 chr9 89475844 89475994 -52795450 + L2 LINE L2 3160 3310 -3 28 0 0 0 chr9 89476010 89476038 -52795406 + AT_rich Low_complexity Low_complexity 1 28 0 1446 236 48 26 chr9 89476053 89476430 -52795014 - L1ME3 LINE L1 -324 5846 5462 414 260 65 123 chr9 89476711 89476809 -52794635 - HAL1 LINE L1 -742 1765 1663 237 33 0 0 chr9 89476809 89476839 -52794605 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1755 118 0 4 chr9 89476841 89477087 -52794357 - AluSg SINE Alu -30 280 36 414 260 65 123 chr9 89477087 89477291 -52794153 - HAL1 LINE L1 -845 1662 1499 550 81 58 0 chr9 89477291 89477378 -52794066 - L1MB3 LINE L1 -7 6176 6085 414 260 65 123 chr9 89477378 89477582 -52793862 - HAL1 LINE L1 -1008 1499 1285 328 216 27 0 chr9 89477777 89477851 -52793593 + MLT1L LTR MaLR 125 200 -415 22 70 0 0 chr9 89478506 89478549 -52792895 + AT_rich Low_complexity Low_complexity 1 43 0 485 222 37 0 chr9 89478741 89478849 -52792595 + MER5A DNA MER1_type 75 186 -3 274 303 49 49 chr9 89478742 89478864 -52792580 - MER5A DNA MER1_type -64 125 4 * 4262 93 4 12 chr9 89479664 89480223 -52791221 + MER41A LTR ERV1 1 554 0 1072 154 77 60 chr9 89480223 89480500 -52790944 + MER41A-int LTR ERV1 1 289 -5657 1822 115 83 4 chr9 89480506 89480784 -52790660 - AluSx SINE Alu -12 300 1 964 140 0 7 chr9 89480784 89480920 -52790524 - AluSq/x SINE Alu -176 137 1 4129 150 49 1 chr9 89480920 89481568 -52789876 + MER41A-int LTR ERV1 181 859 -5087 2639 153 16 15 chr9 89481551 89482137 -52789307 + MER41A-int LTR ERV1 648 3585 -4231 * 7662 120 44 23 chr9 89482135 89483394 -52788050 + MER41A-int LTR ERV1 1898 3182 -2764 * 7936 93 22 11 chr9 89483388 89484488 -52786956 + MER41A-int LTR ERV1 4833 5944 -2 4064 101 4 0 chr9 89484488 89485032 -52786412 + MER41A LTR ERV1 1 546 -8 2077 161 122 10 chr9 89485979 89486364 -52785080 + MSTA LTR MaLR 1 428 0 4187 122 75 0 chr9 89486376 89486967 -52784477 - MER41B LTR ERV1 0 635 1 11826 102 10 10 chr9 89486967 89488654 -52782790 - MER41B-int LTR ERV1 0 5946 4260 3794 132 13 18 chr9 89488652 89489280 -52782164 - MER41B-int LTR ERV1 -2254 3692 3068 * 37957 61 2 3 chr9 89489280 89494859 -52776585 - L1PA5 LINE L1 -6 6148 578 5988 123 22 18 chr9 89494863 89495767 -52775677 - MER41B-int LTR ERV1 -2872 3074 2167 1121 85 0 7 chr9 89495763 89495916 -52775528 - MER41B-int LTR ERV1 -3929 2017 1866 * 2558 149 37 20 chr9 89495903 89496523 -52774921 - MER41B-int LTR ERV1 -4171 3524 1390 * 3786 164 16 14 chr9 89496499 89497134 -52774310 - MER41B-int LTR ERV1 -5310 636 1 4169 118 82 0 chr9 89497134 89497721 -52773723 - MER41B LTR ERV1 0 635 1 210 217 24 107 chr9 89497917 89498071 -52773373 + MER5B DNA MER1_type 8 189 0 6394 54 5 6 chr9 89498332 89499133 -52772311 - L1PA8 LINE L1 -2 6170 5371 290 278 31 10 chr9 89499573 89499670 -52771774 - MLT1K LTR MaLR -308 280 182 265 128 39 115 chr9 89500062 89500140 -52771304 + LTR45 LTR ERV1 75 146 -379 180 216 27 0 chr9 89500145 89500182 -52771262 + MER5A DNA MER1_type 25 62 -127 706 188 30 18 chr9 89500184 89500349 -52771095 + LTR45 LTR ERV1 359 525 0 341 255 29 3 chr9 89500461 89500581 -52770863 + MLT1H LTR MaLR 18 179 -370 6613 150 37 19 chr9 89500644 89501614 -52769830 + Ricksha DNA DNA 1707 2716 -530 2395 84 3 0 chr9 89501614 89501912 -52769532 + AluSp SINE Alu 7 305 -8 6613 150 37 19 chr9 89501912 89502453 -52768991 + Ricksha DNA DNA 2716 3246 0 496 316 117 15 chr9 89502478 89502921 -52768523 - L1ME LINE L1 -476 5688 5194 438 249 78 55 chr9 89503361 89503670 -52767774 - L1ME LINE L1 -1447 4699 4384 298 282 159 51 chr9 89504299 89504789 -52766655 - HAL1 LINE L1 -742 1765 1223 28 0 0 0 chr9 89505435 89505463 -52765981 + AT_rich Low_complexity Low_complexity 1 28 0 512 238 76 65 chr9 89505668 89505971 -52765473 + L1ME LINE L1 5270 5577 -544 1136 217 36 1 chr9 89508575 89508869 -52762575 + MER2 DNA MER2_type 4 345 0 595 89 0 0 chr9 89509729 89509808 -52761636 - Alu SINE Alu -9 303 225 412 234 9 18 chr9 89510235 89510346 -52761098 + L1ME3 LINE L1 6051 6160 -2 24 0 0 0 chr9 89512915 89512939 -52758505 + AT_rich Low_complexity Low_complexity 1 24 0 300 111 0 0 chr9 89514662 89514707 -52756737 + (TG)n Simple_repeat Simple_repeat 1 45 0 1880 147 0 30 chr9 89514709 89515008 -52756436 - AluJb SINE Alu -22 290 1 1738 170 35 3 chr9 89515009 89515320 -52756124 - MER7A DNA MER2_type -23 323 5 230 184 156 28 chr9 89516475 89516584 -52754860 - LTR16C LTR ERVL 0 491 369 266 274 104 22 chr9 89517110 89517245 -52754199 + MIR SINE MIR 104 249 -13 350 258 138 48 chr9 89517573 89517715 -52753729 - L2 LINE L2 0 3313 3152 381 169 42 0 chr9 89517715 89517786 -52753658 - MER116 DNA Mariner -2 78 5 350 258 138 48 chr9 89517786 89517810 -52753634 - L2 LINE L2 -161 3152 3132 361 350 70 0 chr9 89517823 89517966 -52753478 - MIR SINE MIR -79 183 31 898 205 5 32 chr9 89518784 89518974 -52752470 - MER5A DNA MER1_type -1 188 4 722 298 33 0 chr9 89519363 89519578 -52751866 + MIR SINE MIR 32 253 -9 904 227 68 34 chr9 89520385 89520409 -52751035 - HsTC2 DNA Tc2 0 1898 1876 1022 162 146 11 chr9 89520409 89520594 -52750850 - MER6B DNA MER2_type 0 210 1 904 227 68 34 chr9 89520594 89520921 -52750523 - HsTC2 DNA Tc2 -22 1876 1535 4896 216 99 14 chr9 89520921 89522369 -52749075 + L1ME1 LINE L1 3151 4722 -1424 944 186 53 11 chr9 89522397 89522585 -52748859 + L1ME1 LINE L1 5790 5985 -181 293 186 57 14 chr9 89522714 89522784 -52748660 - HsTC2 DNA Tc2 -544 1354 1282 * 347 139 0 23 chr9 89522782 89522878 -52748566 - HsTC2 DNA Tc2 -1754 144 16 2017 259 81 16 chr9 89523250 89523945 -52747499 + HsTC2a DNA Tc2 5 744 0 1130 146 6 0 chr9 89524067 89524232 -52747212 - AluSq SINE Alu -14 299 134 2215 88 10 10 chr9 89524232 89524527 -52746917 - AluY SINE Alu -16 295 1 2340 212 29 26 chr9 89524531 89525078 -52746366 - L1MC4 LINE L1 -142 7900 7352 22 0 0 0 chr9 89525190 89525212 -52746232 + AT_rich Low_complexity Low_complexity 1 22 0 262 128 0 0 chr9 89525374 89525413 -52746031 + L2 LINE L2 3266 3304 -9 252 0 0 0 chr9 89525920 89525948 -52745496 + (T)n Simple_repeat Simple_repeat 1 28 0 648 181 71 8 chr9 89526230 89526357 -52745087 - MER20 DNA MER1_type -61 158 24 4015 137 58 6 chr9 89527422 89528094 -52743350 - L1MB3 LINE L1 -2 6181 5475 241 221 0 0 chr9 89528199 89528252 -52743192 - L1MB3 LINE L1 -695 5473 5428 496 276 128 0 chr9 89528431 89528608 -52742836 + MIR SINE MIR 58 258 -4 232 184 0 0 chr9 89528811 89528849 -52742595 + L1MC5 LINE L1 6734 6771 -1190 349 253 94 34 chr9 89528972 89529002 -52742442 - L1ME3 LINE L1 -10 6160 6133 2415 107 0 0 chr9 89529002 89529311 -52742133 - AluSx SINE Alu -3 309 1 349 253 94 34 chr9 89529311 89529459 -52741985 - L1ME3 LINE L1 -37 6133 5970 232 263 53 53 chr9 89529480 89529632 -52741812 - L1P LINE L1 -746 5408 5257 504 199 75 133 chr9 89529720 89529946 -52741498 - L1ME1 LINE L1 -115 6051 5839 984 183 166 46 chr9 89529951 89530235 -52741209 + L1ME1 LINE L1 5531 5848 -318 21 0 0 0 chr9 89530238 89530259 -52741185 + AT_rich Low_complexity Low_complexity 1 21 0 321 26 0 0 chr9 89530355 89530393 -52741051 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr9 89530738 89530759 -52740685 + AT_rich Low_complexity Low_complexity 1 21 0 183 314 100 0 chr9 89531220 89531290 -52740154 + L2 LINE L2 3010 3086 -186 5756 129 50 6 chr9 89532392 89533255 -52738189 - MER4D LTR ERV1 -2 901 1 251 197 33 0 chr9 89533934 89533995 -52737449 + (TA)n Simple_repeat Simple_repeat 2 64 0 3161 176 132 48 chr9 89534063 89534766 -52736678 + MER21B LTR ERV1 1 762 -101 394 282 31 51 chr9 89539540 89539735 -52731709 - L1P2 LINE L1 -704 5450 5260 2345 88 0 0 chr9 89539857 89540154 -52731290 + AluY SINE Alu 1 297 -14 255 61 0 0 chr9 89540155 89540188 -52731256 + (TA)n Simple_repeat Simple_repeat 1 33 0 240 261 42 59 chr9 89540192 89540311 -52731133 - L1 LINE L1 -1092 5054 4938 314 345 127 5 chr9 89543353 89543422 -52728022 - MIR SINE MIR -35 227 168 1732 226 20 55 chr9 89543422 89543717 -52727727 + MER63B DNA MER1_type 1 276 -786 2360 100 0 0 chr9 89543717 89544026 -52727418 - AluSg SINE Alu -1 309 1 1732 226 20 55 chr9 89544026 89544182 -52727262 + MER63B DNA MER1_type 276 436 0 314 345 127 5 chr9 89544182 89544309 -52727135 - MIR SINE MIR -94 168 7 228 227 34 68 chr9 89544834 89544922 -52726522 + MER5B DNA MER1_type 91 175 -3 225 0 0 0 chr9 89546127 89546152 -52725292 + (T)n Simple_repeat Simple_repeat 1 25 0 433 286 22 28 chr9 89548532 89548571 -52722873 + MIR SINE MIR 9 47 -215 4629 112 73 5 chr9 89548571 89549241 -52722203 - LTR62 LTR ERVK -2 717 2 433 286 22 28 chr9 89549241 89549379 -52722065 + MIR SINE MIR 47 185 -77 221 216 39 0 chr9 89551390 89551441 -52720003 + CT-rich Low_complexity Low_complexity 4 56 0 2051 122 4 4 chr9 89551538 89551817 -52719627 - AluJb SINE Alu -33 279 1 22 0 0 0 chr9 89552163 89552185 -52719259 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 89553454 89553475 -52717969 + AT_rich Low_complexity Low_complexity 1 21 0 859 179 67 17 chr9 89554568 89554747 -52716697 + MER5A DNA MER1_type 2 189 0 594 206 32 19 chr9 89554766 89554921 -52716523 + MER5B DNA MER1_type 1 157 -21 318 244 33 11 chr9 89554987 89555077 -52716367 + MER5A DNA MER1_type 32 123 -66 360 234 243 9 chr9 89556206 89556317 -52715127 + MER5B DNA MER1_type 36 172 -6 1674 163 49 65 chr9 89556589 89556957 -52714487 + MLT1A1 LTR MaLR 4 365 0 1341 237 119 40 chr9 89557008 89557416 -52714028 - MLT1H1 LTR MaLR -9 546 91 2345 90 0 0 chr9 89557416 89557704 -52713740 + AluSc SINE Alu 1 288 -21 1341 237 119 40 chr9 89557704 89557792 -52713652 - MLT1H1 LTR MaLR -464 91 11 593 150 10 40 chr9 89558862 89558962 -52712482 - Tigger7 DNA MER2_type -1 2586 2490 * 1369 197 0 23 chr9 89558961 89559220 -52712224 - Tigger7 DNA MER2_type -284 266 14 1069 108 19 0 chr9 89559779 89559936 -52711508 - MER4B LTR ERV1 -450 160 1 348 83 0 0 chr9 89560179 89560227 -52711217 + (TG)n Simple_repeat Simple_repeat 1 48 0 276 258 52 0 chr9 89560755 89560852 -52710592 - MIR SINE MIR -34 228 127 1146 142 0 0 chr9 89560983 89561152 -52710292 + FRAM SINE Alu 4 172 -4 418 180 80 10 chr9 89561392 89561492 -52709952 + MER5A DNA MER1_type 29 135 -54 186 238 48 0 chr9 89561495 89561537 -52709907 + MER5A DNA MER1_type 111 154 -35 3344 96 51 92 chr9 89562408 89563036 -52708408 - LTR43 LTR ERV1 0 602 1 407 302 33 93 chr9 89564094 89564174 -52707270 + Charlie7 DNA MER1_type 407 490 -2122 1989 107 96 0 chr9 89564174 89564454 -52706990 + AluSq SINE Alu 5 311 -2 407 302 33 93 chr9 89564454 89564707 -52706737 + Charlie7 DNA MER1_type 490 720 -1892 259 215 76 76 chr9 89564702 89564874 -52706570 + Charlie7 DNA MER1_type 2418 2589 -23 * 324 200 75 0 chr9 89565204 89565284 -52706160 + MLT1I LTR MaLR 318 403 -6 286 303 0 0 chr9 89568716 89568792 -52702652 + MIR SINE MIR 85 160 -102 2152 143 0 6 chr9 89569673 89569987 -52701457 + AluSx SINE Alu 1 312 0 2361 133 30 15 chr9 89570241 89570638 -52700806 - MER57A LTR ERV1 0 403 1 2361 71 0 0 chr9 89570963 89571280 -52700164 - AluY SINE Alu 0 317 1 4164 181 55 13 chr9 89571582 89572002 -52699442 - L1MB7 LINE L1 -17 6167 5766 2239 116 7 0 chr9 89572002 89572296 -52699148 - AluSg SINE Alu -14 296 1 4164 181 55 13 chr9 89572296 89572846 -52698598 - L1MB7 LINE L1 -418 5766 5158 2174 102 20 0 chr9 89574483 89574778 -52696666 + AluSq SINE Alu 1 301 -12 2355 100 0 7 chr9 89576104 89576413 -52695031 + AluSx SINE Alu 1 307 -5 227 161 48 81 chr9 89576838 89576900 -52694544 + MER63 DNA MER1_type 1 686 -376 281 341 103 0 chr9 89578314 89578440 -52693004 - L2 LINE L2 0 3272 3134 221 246 29 14 chr9 89578487 89578556 -52692888 + CT-rich Low_complexity Low_complexity 1 70 0 351 294 29 0 chr9 89578566 89578668 -52692776 - L2 LINE L2 -6 3307 3203 228 267 0 0 chr9 89579020 89579080 -52692364 - MIR SINE MIR -106 156 97 216 285 21 104 chr9 89579268 89579412 -52692032 - MIR3 SINE MIR -7 201 70 23 0 0 0 chr9 89580652 89580675 -52690769 + AT_rich Low_complexity Low_complexity 1 23 0 1024 171 0 6 chr9 89582109 89582279 -52689165 + AluJb SINE Alu 131 299 -13 262 279 42 32 chr9 89582909 89583125 -52688319 - L1MB7 LINE L1 -976 5170 4953 351 0 0 0 chr9 89583125 89583164 -52688280 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr9 89583166 89583188 -52688256 + AT_rich Low_complexity Low_complexity 1 22 0 986 128 0 0 chr9 89583208 89583341 -52688103 - AluSq/x SINE Alu -180 133 1 554 247 44 51 chr9 89583467 89583742 -52687702 - L1MB7 LINE L1 -1312 4834 4562 2203 89 66 65 chr9 89583756 89584173 -52687271 - LTR14B LTR ERVK 0 608 1 210 71 0 0 chr9 89584664 89584692 -52686752 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 315 206 47 75 chr9 89584692 89584799 -52686645 - L2 LINE L2 -13 3300 3197 425 276 78 53 chr9 89584815 89585137 -52686307 - L1MB7 LINE L1 -2192 3954 3625 581 267 94 53 chr9 89585158 89585424 -52686020 + L2 LINE L2 3032 3308 -5 244 236 69 14 chr9 89586816 89586888 -52684556 - MLT1I LTR MaLR 0 409 334 2331 178 40 26 chr9 89587294 89587788 -52683656 + L1MB7 LINE L1 5673 6173 -11 432 206 59 80 chr9 89587804 89587830 -52683614 + L1MC5 LINE L1 7339 7364 -597 1571 165 103 0 chr9 89587830 89588103 -52683341 + AluJo SINE Alu 1 301 -11 432 206 59 80 chr9 89588103 89588362 -52683082 + L1MC5 LINE L1 7364 7618 -343 * 516 191 17 0 chr9 89588357 89588472 -52682972 - L1MB7 LINE L1 -3669 2477 2361 502 202 8 8 chr9 89588474 89588593 -52682851 - L1MDa LINE L1 -2663 3877 3759 1520 231 121 19 chr9 89588603 89589131 -52682313 - L1MDa LINE L1 -3473 3067 2487 466 260 47 12 chr9 89589422 89589591 -52681853 - HAL1 LINE L1 -747 1760 1586 585 299 87 17 chr9 89589599 89589943 -52681501 - HAL1 LINE L1 -1017 1490 1123 186 128 0 0 chr9 89590008 89590047 -52681397 + (TA)n Simple_repeat Simple_repeat 2 40 0 302 190 32 7 chr9 89590116 89590558 -52680886 + (TA)n Simple_repeat Simple_repeat 1 453 0 2248 68 17 24 chr9 89591393 89591688 -52679756 + AluY SINE Alu 1 293 -18 3779 121 81 44 chr9 89592324 89592733 -52678711 - MER4D LTR ERV1 0 866 459 2308 97 3 34 chr9 89592733 89593054 -52678390 - AluSq SINE Alu -2 311 1 3779 121 81 44 chr9 89593054 89593361 -52678083 - MER4D LTR ERV1 -407 459 165 231 315 8 23 chr9 89594978 89595108 -52676336 + CT-rich Low_complexity Low_complexity 4 131 0 1379 256 22 7 chr9 89595462 89595907 -52675537 - L1M4 LINE L1 -1553 4593 4142 2328 199 42 134 chr9 89596121 89596240 -52675204 - L1M4 LINE L1 -2012 4134 4006 2144 140 0 10 chr9 89596240 89596547 -52674897 - AluSx SINE Alu -8 304 1 2328 199 42 134 chr9 89596547 89596678 -52674766 - L1M4 LINE L1 -2140 4006 3865 6967 55 7 1 chr9 89596678 89598319 -52673125 - L1PA7 LINE L1 -5 6149 4495 2328 199 42 134 chr9 89598319 89598933 -52672511 - L1M4 LINE L1 -2281 3865 3349 412 208 26 0 chr9 89598933 89599010 -52672434 - Tigger5 DNA MER2_type 0 2323 2245 247 276 35 9 chr9 89599058 89599174 -52672270 - L1M4 LINE L1 -2796 3350 3232 * 1046 171 30 27 chr9 89599170 89599433 -52672011 - L1M4 LINE L1 -2865 3281 3018 479 270 86 6 chr9 89599808 89599971 -52671473 - MER5B DNA MER1_type -2 176 1 21 71 0 0 chr9 89604141 89604183 -52667261 + AT_rich Low_complexity Low_complexity 1 42 0 870 226 133 7 chr9 89606364 89606634 -52664810 - LTR16C LTR ERVL -2 489 186 720 206 6 67 chr9 89606741 89606921 -52664523 - MER5A DNA MER1_type -19 170 2 227 79 26 0 chr9 89609386 89609424 -52662020 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr9 89609431 89609459 -52661985 + AT_rich Low_complexity Low_complexity 1 28 0 2322 227 29 52 chr9 89710537 89710658 -52560786 + L1M4 LINE L1 2522 2644 -3502 2145 117 3 7 chr9 89710658 89710957 -52560487 - AluSx SINE Alu -14 298 1 2322 227 29 52 chr9 89710957 89711297 -52560147 + L1M4 LINE L1 2644 2990 -3156 2033 128 7 0 chr9 89711297 89711586 -52559858 + AluSx SINE Alu 2 292 -20 242 0 61 0 chr9 89711589 89711622 -52559822 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2322 227 29 52 chr9 89711622 89712046 -52559398 + L1M4 LINE L1 2992 3392 -2754 609 197 67 158 chr9 89712096 89712380 -52559064 + MLT1A1 LTR MaLR 1 258 -107 685 195 30 18 chr9 89712488 89712652 -52558792 - MER20 DNA MER1_type -43 176 11 437 185 134 0 chr9 89712775 89712894 -52558550 + MLT1C LTR MaLR 129 263 -204 1460 239 118 33 chr9 89713026 89713490 -52557954 - L1M4 LINE L1 -2781 3365 2815 1774 176 0 29 chr9 89713490 89713797 -52557647 + AluJo SINE Alu 1 298 -14 1460 239 118 33 chr9 89713797 89714060 -52557384 - L1M4 LINE L1 -3331 2815 2576 6714 114 1 34 chr9 89714202 89715261 -52556183 - L1P LINE L1 -4500 1646 623 728 68 0 0 chr9 89715259 89715347 -52556097 - L1P LINE L1 -6048 98 11 * 308 313 57 55 chr9 89715397 89716149 -52555295 + L1M4 LINE L1 4078 4831 -1315 8234 189 95 84 chr9 89716353 89717338 -52554106 + L1MCa LINE L1 33 1006 -5420 3471 95 30 8 chr9 89717338 89717841 -52553603 - MER75 DNA T2_type 0 514 1 8234 189 95 84 chr9 89717841 89718806 -52552638 + L1MCa LINE L1 1006 2017 -4409 2124 74 4 4 chr9 89718806 89719077 -52552367 - AluY SINE Alu -7 304 34 8234 189 95 84 chr9 89719077 89719571 -52551873 + L1MCa LINE L1 2017 2504 -3922 2042 135 71 0 chr9 89719573 89719884 -52551560 + MER1B DNA MER1_type 7 339 0 686 248 24 9 chr9 89719886 89720096 -52551348 + L1MCa LINE L1 2510 2722 -3704 19369 56 2 2 chr9 89720202 89722694 -52548750 + L1P LINE L1 1760 4252 -1894 5782 242 88 26 chr9 89722700 89725232 -52546212 + L1MEc LINE L1 1827 4446 -1769 4264 242 32 26 chr9 89725406 89726775 -52544669 + L1M4 LINE L1 3456 4832 -1314 1287 149 9 0 chr9 89726777 89726992 -52544452 + L1MD1 LINE L1 6006 6222 -20 824 184 34 0 chr9 89727017 89727196 -52544248 + L1M4 LINE L1 3890 4074 -2072 330 169 70 99 chr9 89727947 89728089 -52543355 + LTR37B LTR ERV1 331 468 0 2692 206 37 21 chr9 89728643 89729205 -52542239 + L1MA2 LINE L1 15 585 -6980 * 7107 161 21 21 chr9 89729200 89729843 -52541601 + L1MA2 LINE L1 5295 5936 -1629 279 0 0 0 chr9 89729843 89729874 -52541570 + (CA)n Simple_repeat Simple_repeat 2 32 0 7107 161 21 21 chr9 89729874 89730069 -52541375 + L1MA2 LINE L1 5936 6129 -1436 180 0 0 0 chr9 89730069 89730089 -52541355 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7107 161 21 21 chr9 89730089 89730610 -52540834 + L1MA2 LINE L1 6129 6656 -909 4195 105 28 3 chr9 89730614 89731262 -52540182 + L1MA2 LINE L1 7059 7722 -1 5183 240 34 21 chr9 89732003 89733501 -52537943 + L1MC4a LINE L1 3520 5036 -1110 379 230 161 37 chr9 89733545 89733762 -52537682 + L1MC4a LINE L1 5688 5931 -1877 2121 162 11 6 chr9 89733783 89734147 -52537297 + MER47A DNA MER2_type 1 366 0 513 0 0 0 chr9 89735766 89735823 -52535621 + (TG)n Simple_repeat Simple_repeat 2 58 0 1344 229 84 34 chr9 89735826 89736268 -52535176 - L1ME2 LINE L1 -10 6154 5691 854 232 12 55 chr9 89736478 89736732 -52534712 - L1ME2 LINE L1 -474 5690 5448 727 290 98 7 chr9 89737232 89737539 -52533905 - L1ME3A LINE L1 -9 6161 5827 616 260 89 12 chr9 89737540 89737867 -52533577 - L1ME3A LINE L1 -1458 4688 4337 4601 135 63 35 chr9 89737867 89739062 -52532382 + L1PA16 LINE L1 4741 5967 -199 2006 108 35 11 chr9 89739062 89739349 -52532095 + AluSx SINE Alu 1 294 -18 4601 135 63 35 chr9 89739349 89739555 -52531889 + L1PA16 LINE L1 5967 6166 0 1593 205 15 69 chr9 89740088 89740493 -52530951 - MLT1B LTR MaLR -7 383 1 290 275 29 0 chr9 89741008 89741077 -52530367 - MIR3 SINE MIR -21 187 117 1565 185 108 24 chr9 89741192 89741571 -52529873 + L1MB7 LINE L1 5636 6046 -138 1247 136 83 4 chr9 89742405 89742647 -52528797 - L1MA9 LINE L1 -192 6120 5860 738 208 6 0 chr9 89742673 89742832 -52528612 + L1MA9 LINE L1 6153 6312 0 236 176 15 29 chr9 89743270 89743338 -52528106 - L1ME4a LINE L1 -3 6118 6052 216 200 20 0 chr9 89743996 89744046 -52527398 + A-rich Low_complexity Low_complexity 6 56 0 1829 145 11 3 chr9 89744132 89744415 -52527029 + AluSg SINE Alu 25 309 -1 1595 201 52 81 chr9 89744696 89745229 -52526215 - MLT2B1 LTR ERVL 0 520 3 535 266 54 0 chr9 89745242 89745426 -52526018 + L1PBa LINE L1 6 199 -6664 1997 147 3 0 chr9 89746212 89746512 -52524932 - AluSx SINE Alu -11 301 1 575 191 16 13 chr9 89747647 89747963 -52523481 + GA-rich Low_complexity Low_complexity 1 317 0 579 178 3 12 chr9 89748079 89748415 -52523029 + GA-rich Low_complexity Low_complexity 1 333 0 2507 77 0 13 chr9 89749897 89750210 -52521234 + AluSg SINE Alu 1 309 -1 2330 243 72 41 chr9 89750261 89750987 -52520457 - L1ME1 LINE L1 -140 6026 5266 307 209 0 60 chr9 89753293 89753386 -52518058 - MIR SINE MIR -61 147 101 220 319 33 0 chr9 89755538 89755629 -52515815 + MIR SINE MIR 118 211 -51 49 18 0 0 chr9 89755968 89756024 -52515420 + AT_rich Low_complexity Low_complexity 1 56 0 14433 178 60 40 chr9 89756024 89757822 -52513622 - L1PB2 LINE L1 -1 6866 5106 216 0 0 0 chr9 89757822 89757846 -52513598 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 14433 178 60 40 chr9 89757846 89758736 -52512708 - L1PB2 LINE L1 -1761 5106 4235 1116 131 0 19 chr9 89758736 89758896 -52512548 - AluSg/x SINE Alu -27 285 129 14433 178 60 40 chr9 89758896 89761905 -52509539 - L1PB2 LINE L1 -2632 4235 920 631 179 211 0 chr9 89763493 89763649 -52507795 + MER5A DNA MER1_type 1 189 0 2086 143 64 47 chr9 89764074 89764114 -52507330 - MLT2D LTR ERVL -1 413 375 366 23 0 0 chr9 89764114 89764157 -52507287 + (TG)n Simple_repeat Simple_repeat 2 44 0 2086 143 64 47 chr9 89764157 89764522 -52506922 - MLT2D LTR ERVL -39 375 1 186 167 0 0 chr9 89764671 89764707 -52506737 + (CA)n Simple_repeat Simple_repeat 1 36 0 1405 160 61 11 chr9 89767005 89767268 -52504176 + AluJo SINE Alu 7 282 -30 267 300 0 0 chr9 89767410 89767580 -52503864 + (CA)n Simple_repeat Simple_repeat 1 170 0 399 294 0 0 chr9 89767594 89767774 -52503670 + (CA)n Simple_repeat Simple_repeat 1 180 0 574 261 43 10 chr9 89768216 89768411 -52503033 + L1ME LINE L1 5593 5785 -377 22 106 0 0 chr9 89768740 89768825 -52502619 + AT_rich Low_complexity Low_complexity 1 85 0 182 275 0 29 chr9 89770242 89770311 -52501133 - L2 LINE L2 -290 2982 2916 411 239 41 46 chr9 89770435 89770632 -52500812 - Charlie7 DNA MER1_type 0 2612 2417 3595 118 7 45 chr9 89770771 89771604 -52499840 + L1PB1 LINE L1 4984 5789 -362 2244 92 50 5 chr9 89771605 89772060 -52499384 + LTR17 LTR ERV1 256 780 0 11023 76 48 9 chr9 89772060 89773528 -52497916 + HERV17 LTR ERV1 1 1525 -7101 10625 56 2 1 chr9 89773513 89774786 -52496658 + HERV17 LTR ERV1 2481 3754 -4872 * 5070 53 2 2 chr9 89774765 89775384 -52496060 + HERV17 LTR ERV1 5405 6023 -2603 * 2396 72 0 0 chr9 89775403 89775694 -52495750 + HERV17 LTR ERV1 8336 8626 0 2603 68 3 0 chr9 89775694 89776019 -52495425 + LTR17 LTR ERV1 1 326 -454 186 43 0 0 chr9 89776020 89776043 -52495401 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2273 138 8 5 chr9 89776044 89776414 -52495030 + L1PB1 LINE L1 5777 6147 -4 30 0 0 0 chr9 89776416 89776446 -52494998 + AT_rich Low_complexity Low_complexity 1 30 0 586 275 89 58 chr9 89776809 89777033 -52494411 - L1ME4a LINE L1 -48 6073 5857 2076 149 39 10 chr9 89777033 89777416 -52494028 - L1MB3 LINE L1 0 6183 5790 586 275 89 58 chr9 89777416 89777638 -52493806 - L1ME4a LINE L1 -264 5857 5613 3103 209 39 146 chr9 89777997 89778122 -52493322 - L1MC4a LINE L1 -5 7803 7666 2148 142 0 0 chr9 89778122 89778431 -52493013 + AluSx SINE Alu 1 309 -3 3103 209 39 146 chr9 89778431 89778460 -52492984 - L1MC4a LINE L1 -142 7666 7635 1598 181 4 4 chr9 89778460 89778776 -52492668 + AluJb SINE Alu 1 316 0 3103 209 39 146 chr9 89778776 89779207 -52492237 - L1MC4a LINE L1 -173 7635 7159 549 194 65 0 chr9 89779207 89779331 -52492113 - MLT1F1 LTR MaLR -433 134 3 3103 209 39 146 chr9 89779331 89780014 -52491430 - L1MC4a LINE L1 -649 7159 6591 405 0 0 0 chr9 89780057 89780102 -52491342 + (TA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr9 89781387 89781408 -52490036 + AT_rich Low_complexity Low_complexity 1 21 0 212 336 18 0 chr9 89781466 89781579 -52489865 + MIR SINE MIR 35 149 -113 554 188 0 0 chr9 89781588 89781689 -52489755 - MLT1C LTR MaLR -1 504 404 1894 185 70 34 chr9 89781713 89782156 -52489288 + LTR2B LTR ERV1 32 490 0 1073 189 98 31 chr9 89782156 89782463 -52488981 - MLT1C LTR MaLR -134 333 6 283 194 31 82 chr9 89782468 89782566 -52488878 + MIR SINE MIR 156 248 -14 684 175 92 0 chr9 89782577 89782757 -52488687 + FLAM_C SINE Alu 2 192 0 22 0 0 0 chr9 89782790 89782812 -52488632 + AT_rich Low_complexity Low_complexity 1 22 0 2254 160 16 5 chr9 89782929 89783316 -52488128 + MER61C LTR ERV1 14 404 -30 2352 285 67 27 chr9 89784295 89785105 -52486339 + L1MB8 LINE L1 11 852 -6007 1716 247 75 47 chr9 89785108 89785813 -52485631 + L1MB8 LINE L1 1775 2499 -4460 297 285 109 39 chr9 89785918 89786304 -52485140 + L1MB8 LINE L1 2570 2982 -4156 6540 207 33 30 chr9 89786305 89788023 -52483421 + L1MB8 LINE L1 4452 6173 -784 1765 176 14 57 chr9 89788025 89788462 -52482982 + L1MB8 LINE L1 6553 6970 -19 891 283 150 23 chr9 89788485 89788958 -52482486 - MLT1E LTR MaLR -54 539 7 25 0 0 0 chr9 89789637 89789662 -52481782 + AT_rich Low_complexity Low_complexity 1 25 0 2133 143 9 26 chr9 89791143 89791486 -52479958 + MER1B DNA MER1_type 1 337 0 238 281 6 60 chr9 89793059 89793226 -52478218 + A-rich Low_complexity Low_complexity 3 160 0 349 125 0 0 chr9 89793974 89794022 -52477422 + MLT1C LTR MaLR 5 52 -415 432 271 19 0 chr9 89794242 89794349 -52477095 + MER5A DNA MER1_type 4 112 -77 333 0 0 0 chr9 89794727 89794764 -52476680 + (TG)n Simple_repeat Simple_repeat 2 38 0 182 278 19 0 chr9 89795888 89795942 -52475502 + MIR SINE MIR 106 160 -102 2527 132 8 24 chr9 89795973 89796343 -52475101 + THE1B LTR MaLR 1 364 0 9778 100 1 1 chr9 89796343 89797635 -52473809 + THE1B-int LTR MaLR 1 1293 -287 422 273 59 31 chr9 89797702 89797939 -52473505 - MLT1H1 LTR MaLR -280 315 11 1666 67 0 0 chr9 89798784 89798978 -52472466 - MER107 DNA MER1_type 0 197 4 1892 138 130 16 chr9 89799488 89799858 -52471586 - MER101 LTR ERV1 -62 412 1 2725 136 11 20 chr9 89801264 89801704 -52469740 - L1MC1 LINE L1 0 6333 5898 1058 276 3 0 chr9 89801708 89802009 -52469435 - L1M4 LINE L1 -1201 5339 5038 2435 199 74 27 chr9 89802159 89802986 -52468458 - L1MDa LINE L1 -3682 2858 2011 * 2480 87 35 27 chr9 89802980 89803189 -52468255 - L1PB1 LINE L1 0 6151 5943 15229 175 38 10 chr9 89803189 89808479 -52462965 - L1PBa LINE L1 -360 6507 1113 1119 164 0 19 chr9 89808459 89808666 -52462778 - L1PBa LINE L1 -6653 210 8 * 380 170 4 67 chr9 89808666 89808756 -52462688 - MLT1A1 LTR MaLR -67 323 213 2058 179 74 15 chr9 89808761 89808800 -52462644 - L1MDa LINE L1 -4493 2047 2012 1782 73 39 0 chr9 89808800 89809034 -52462410 - MER75B DNA T2_type 0 243 1 2058 179 74 15 chr9 89809034 89809452 -52461992 - L1MDa LINE L1 -4528 2012 1563 1610 281 64 41 chr9 89809486 89810094 -52461350 - L1MDa LINE L1 -5593 947 19 405 224 112 0 chr9 89810091 89810207 -52461237 - L1 LINE L1 -2279 3867 3735 * 546 300 30 30 chr9 89810192 89810422 -52461022 - L1MEc LINE L1 -5749 647 418 1070 254 14 55 chr9 89810429 89810862 -52460582 + L1ME1 LINE L1 5747 6161 -5 488 208 34 67 chr9 89810885 89811063 -52460381 + LTR37B LTR ERV1 213 384 -84 204 67 0 0 chr9 89811086 89811116 -52460328 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1446 187 54 31 chr9 89812421 89812715 -52458729 - AluJb SINE Alu -5 307 7 475 280 62 35 chr9 89813037 89813294 -52458150 + HAL1b LINE L1 373 636 -712 1695 207 18 37 chr9 89813460 89813841 -52457603 - MLT1A2 LTR MaLR 0 374 1 258 111 16 32 chr9 89813916 89813979 -52457465 + (CA)n Simple_repeat Simple_repeat 1 62 0 433 88 0 11 chr9 89814689 89814917 -52456527 + AluY SINE Alu 1 280 -32 432 0 0 0 chr9 89814918 89814966 -52456478 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 2216 193 71 4 chr9 89814977 89815851 -52455593 + L1MB5 LINE L1 4853 5774 -400 285 29 0 0 chr9 89815974 89816008 -52455436 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 726 110 37 0 chr9 89816050 89816159 -52455285 - L1PA13 LINE L1 0 6163 6051 1616 181 23 13 chr9 89816162 89816471 -52454973 + L1MB5 LINE L1 5863 6174 0 1951 136 29 0 chr9 89816484 89816763 -52454681 + AluSx SINE Alu 2 288 -24 6371 151 25 20 chr9 89816930 89818001 -52453443 + Tigger1 DNA MER2_type 1 1077 -1341 5192 184 30 7 chr9 89818084 89819005 -52452439 - MLT1A2-int LTR MaLR -315 1336 394 2498 232 12 59 chr9 89819290 89819953 -52451491 - MER82 DNA MER2_type 0 653 22 2874 215 81 38 chr9 89819953 89820693 -52450751 + L1ME1 LINE L1 4566 5273 -893 198 0 0 0 chr9 89820693 89820715 -52450729 + (TA)n Simple_repeat Simple_repeat 1 22 0 2874 215 81 38 chr9 89820715 89820931 -52450513 + L1ME1 LINE L1 5273 5478 -688 203 0 0 36 chr9 89820931 89820959 -52450485 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2874 215 81 38 chr9 89820959 89821509 -52449935 + L1ME1 LINE L1 5478 6122 -44 510 169 22 148 chr9 89821387 89821570 -52449874 + L1MA10 LINE L1 6168 6327 -7 * 202 234 0 0 chr9 89821672 89821719 -52449725 + A-rich Low_complexity Low_complexity 1 47 0 285 277 208 23 chr9 89822284 89822414 -52449030 - MIR SINE MIR -97 165 12 320 235 101 82 chr9 89823233 89823310 -52448134 + L1M4 LINE L1 5088 5162 -984 2215 106 0 0 chr9 89823310 89823615 -52447829 + AluSx SINE Alu 1 305 0 320 235 101 82 chr9 89823615 89823842 -52447602 + L1M4 LINE L1 5162 5399 -747 441 161 0 0 chr9 89825324 89825411 -52446033 + GA-rich Low_complexity Low_complexity 1 87 0 253 345 42 8 chr9 89826043 89826162 -52445282 + L2 LINE L2 3150 3272 0 265 150 50 0 chr9 89826588 89826688 -52444756 + (TA)n Simple_repeat Simple_repeat 1 105 0 2305 187 61 55 chr9 89826692 89827382 -52444062 - L1MDa LINE L1 -4209 2331 1638 365 248 113 21 chr9 89828378 89828519 -52442925 - HAL1 LINE L1 -110 2397 2244 972 309 79 14 chr9 89828847 89829125 -52442319 - HAL1 LINE L1 -772 1735 1477 2354 62 17 3 chr9 89829125 89829417 -52442027 - AluY SINE Alu -15 296 1 972 309 79 14 chr9 89829417 89829692 -52441752 - HAL1 LINE L1 -1030 1477 1146 245 151 0 94 chr9 89829712 89829765 -52441679 + MLT1A2 LTR MaLR 2 49 -325 507 248 35 9 chr9 89829765 89829878 -52441566 + MSTD LTR MaLR 1 116 -280 195 333 14 29 chr9 89830006 89830075 -52441369 - L2 LINE L2 -2 3270 3203 438 273 198 0 chr9 89830355 89830527 -52440917 + MER115 DNA AcHobo 41 246 -447 2868 137 14 0 chr9 89830946 89831368 -52440076 + MSTA LTR MaLR 1 428 0 268 314 116 8 chr9 89831474 89831595 -52439849 + MIR3 SINE MIR 22 155 -53 212 284 99 0 chr9 89832389 89832470 -52438974 - MIR SINE MIR -10 252 164 * 261 237 114 30 chr9 89832460 89832609 -52438835 + MIR SINE MIR 87 251 -11 195 327 0 0 chr9 89832713 89832768 -52438676 - L2 LINE L2 -12 3301 3247 281 372 77 32 chr9 89832913 89833069 -52438375 - L2 LINE L2 -9 3263 3101 197 261 0 0 chr9 89833208 89833254 -52438190 + MIR SINE MIR 109 154 -108 2189 114 0 29 chr9 89833311 89833626 -52437818 + AluJo SINE Alu 1 306 -6 211 315 68 0 chr9 89834974 89835047 -52436397 - MIR SINE MIR -140 122 45 25 0 0 0 chr9 89835434 89835459 -52435985 + AT_rich Low_complexity Low_complexity 1 25 0 1789 171 29 3 chr9 89837458 89837773 -52433671 - MLT1A1 LTR MaLR -42 323 1 2126 252 107 10 chr9 89837773 89837897 -52433547 - MLT1A1-int LTR MaLR 0 1735 1624 1646 186 34 3 chr9 89837897 89838192 -52433252 + AluJb SINE Alu 1 304 -8 2126 252 107 10 chr9 89838192 89838753 -52432691 - MLT1A1-int LTR MaLR -111 1624 872 3916 177 50 34 chr9 89838799 89839613 -52431831 - MLT1A1-int LTR MaLR -907 828 2 2202 160 16 27 chr9 89839615 89839984 -52431460 - MLT1A1 LTR MaLR 0 365 1 218 230 14 40 chr9 89840576 89840650 -52430794 + CT-rich Low_complexity Low_complexity 1 72 0 238 227 27 13 chr9 89841380 89841455 -52429989 + (CA)n Simple_repeat Simple_repeat 1 76 0 3089 221 88 87 chr9 89841508 89842363 -52429081 + L1MDb LINE L1 41 952 -5457 457 37 0 0 chr9 89842363 89842417 -52429027 - MADE1 DNA Mariner -26 54 1 3089 221 88 87 chr9 89842417 89842796 -52428648 + L1MDb LINE L1 952 1329 -5080 * 3399 76 6 9 chr9 89842782 89843040 -52428404 + L1PA7 LINE L1 4397 4654 -1500 3399 48 2 0 chr9 89843040 89843434 -52428010 + L1PA7 LINE L1 5757 6151 -3 3399 76 6 9 chr9 89843434 89843624 -52427820 + L1PA7 LINE L1 4654 6154 0 469 210 89 45 chr9 89843643 89843800 -52427644 + LTR41 LTR ERVL 3 166 -607 1000 221 50 8 chr9 89843979 89844219 -52427225 + L1MD2 LINE L1 5779 6028 -331 637 216 52 0 chr9 89844587 89844721 -52426723 - MER45A DNA AcHobo -31 147 7 23 54 0 0 chr9 89845648 89845685 -52425759 + AT_rich Low_complexity Low_complexity 1 37 0 2000 113 24 7 chr9 89846297 89846588 -52424856 - AluSx SINE Alu -15 297 2 296 306 71 48 chr9 89846661 89847014 -52424430 + L1ME4a LINE L1 5733 6093 -28 2291 118 0 0 chr9 89849695 89849999 -52421445 + AluSq SINE Alu 1 304 -9 2064 112 3 45 chr9 89851961 89852297 -52419147 + AluSp SINE Alu 2 313 0 273 287 32 11 chr9 89852588 89852682 -52418762 - MLT1J2 LTR MaLR 0 549 454 246 265 29 0 chr9 89853360 89853428 -52418016 - MLT1L LTR MaLR -539 76 7 1754 195 87 81 chr9 89854826 89855313 -52416131 - MER74A LTR ERVL -30 528 39 495 195 20 33 chr9 89855313 89855451 -52415993 - LTR45B LTR ERV1 0 525 351 231 273 0 15 chr9 89855703 89855769 -52415675 - MER74B LTR ERVL -525 97 33 403 279 127 68 chr9 89856823 89857178 -52414266 - MLT1K LTR MaLR -18 570 195 763 170 7 7 chr9 89857761 89857896 -52413548 + AluJb SINE Alu 2 136 -176 27 29 0 0 chr9 89857896 89857930 -52413514 + AT_rich Low_complexity Low_complexity 1 34 0 452 302 0 0 chr9 89858751 89858857 -52412587 + MER90 LTR ERV1 470 575 0 213 159 11 68 chr9 89859138 89859226 -52412218 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 369 251 58 37 chr9 89859405 89859596 -52411848 - L1ME3A LINE L1 -271 5899 5705 294 220 161 14 chr9 89860039 89860202 -52411242 - L1ME3A LINE L1 -619 5547 5349 527 235 65 13 chr9 89860387 89860540 -52410904 - MLT1J2 LTR MaLR -217 233 73 1405 245 189 31 chr9 89861091 89861605 -52409839 - MLT1G1 LTR MaLR 0 595 1 279 0 0 0 chr9 89861754 89861785 -52409659 + (TG)n Simple_repeat Simple_repeat 2 32 0 659 285 139 24 chr9 89862361 89862691 -52408753 - MLT1J2 LTR MaLR -10 440 73 319 347 39 21 chr9 89862717 89863002 -52408442 - L1M4 LINE L1 -818 5328 5039 302 188 208 0 chr9 89863195 89863291 -52408153 - L1MEd LINE L1 -6002 117 2 301 218 92 0 chr9 89863336 89863423 -52408021 - L1ME LINE L1 -265 5856 5762 2923 226 39 28 chr9 89864742 89865527 -52405917 - L1MDa LINE L1 -3155 3385 2597 204 40 0 0 chr9 89865527 89865552 -52405892 + (TG)n Simple_repeat Simple_repeat 1 25 0 2923 226 39 28 chr9 89865552 89865666 -52405778 - L1MDa LINE L1 -3943 2597 2486 7082 226 56 28 chr9 89865668 89867842 -52403602 + L1MC3 LINE L1 2700 3748 -2398 2074 81 29 7 chr9 89867842 89868115 -52403329 + AluSc SINE Alu 1 279 -30 7082 226 56 28 chr9 89868115 89869818 -52401626 + L1MC3 LINE L1 3748 5403 -743 334 279 51 40 chr9 89869922 89870181 -52401263 - L1ME LINE L1 -625 5539 5261 1822 266 69 43 chr9 89870273 89871955 -52399489 - L1ME3A LINE L1 -63 6107 4390 2562 219 91 48 chr9 89871971 89874207 -52397237 - L1ME1 LINE L1 -2 6164 3701 487 192 0 67 chr9 89874362 89874555 -52396889 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 234 356 51 0 chr9 89875120 89875238 -52396206 + MIR SINE MIR 16 139 -69 1282 166 24 58 chr9 89877066 89877361 -52394083 + AluY SINE Alu 1 285 -26 251 156 188 0 chr9 89879164 89879228 -52392216 - HERVL18 LTR ERVL -951 5096 5021 2184 118 7 7 chr9 89879941 89880247 -52391197 + AluSx SINE Alu 1 306 -6 338 209 0 19 chr9 89880417 89880522 -52390922 + (TGGA)n Simple_repeat Simple_repeat 4 106 0 1062 164 0 4 chr9 89880541 89881067 -52390377 + (TCCA)n Simple_repeat Simple_repeat 1 523 0 3494 120 11 21 chr9 89881317 89881932 -52389512 + MER4B LTR ERV1 3 779 0 283 78 39 0 chr9 89883154 89883205 -52388239 + MER74B LTR ERVL 56 108 -514 2338 109 0 3 chr9 89883323 89883627 -52387817 - AluSx SINE Alu -9 303 1 548 168 142 0 chr9 89883628 89883741 -52387703 - MLT1B LTR MaLR -258 132 4 2326 84 0 3 chr9 89884906 89885205 -52386239 + AluSg SINE Alu 1 298 -12 209 226 19 0 chr9 89885267 89885320 -52386124 + MIR SINE MIR 111 164 -98 306 196 243 0 chr9 89886596 89886703 -52384741 - LTR16C LTR ERVL 0 491 359 1881 162 72 57 chr9 89887510 89887985 -52383459 + MER31A LTR ERV1 4 485 0 246 116 0 0 chr9 89888481 89888524 -52382920 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 993 218 16 41 chr9 89889004 89889070 -52382374 - MLT1E1 LTR MaLR 0 654 588 1856 171 3 3 chr9 89889070 89889385 -52382059 + AluSx SINE Alu 1 312 0 993 218 16 41 chr9 89889385 89889561 -52381883 - MLT1E1 LTR MaLR -66 588 418 696 175 8 24 chr9 89889841 89889967 -52381477 - FLAM_C SINE Alu -18 125 2 321 128 0 0 chr9 89890119 89890166 -52381278 - MLT2C1 LTR ERVL -2 513 467 388 275 0 17 chr9 89890205 89890383 -52381061 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 1449 195 60 37 chr9 89890422 89890770 -52380674 - MLT2C1 LTR ERVL -41 356 1 553 255 174 78 chr9 89890924 89891348 -52380096 - MLT1G LTR MaLR -33 522 103 341 211 163 17 chr9 89891938 89892108 -52379336 - MLT1G1 LTR MaLR 0 595 363 421 222 87 63 chr9 89892270 89892396 -52379048 + L2 LINE L2 3113 3241 -31 244 253 20 50 chr9 89892919 89893018 -52378426 + L1M4 LINE L1 5502 5597 -581 183 257 97 44 chr9 89893091 89893204 -52378240 - L2 LINE L2 -91 3222 3104 1504 244 54 27 chr9 89893874 89893907 -52377537 - L1MCa LINE L1 -4449 2141 2110 2801 94 3 0 chr9 89893907 89894270 -52377174 + THE1B LTR MaLR 1 364 0 1504 244 54 27 chr9 89894270 89894899 -52376545 - L1MCa LINE L1 -4480 2110 1348 273 57 0 0 chr9 89894899 89894934 -52376510 + (TG)n Simple_repeat Simple_repeat 2 36 0 968 202 0 6 chr9 89894972 89895145 -52376299 + AluJo SINE Alu 86 257 -55 25 0 0 0 chr9 89895153 89895178 -52376266 + AT_rich Low_complexity Low_complexity 1 25 0 1438 189 0 24 chr9 89895179 89895475 -52375969 - L1MCa LINE L1 -5291 1273 985 855 129 0 0 chr9 89895570 89895694 -52375750 + FLAM_C SINE Alu 12 135 -8 2876 265 40 33 chr9 89895697 89896583 -52374861 - L1MCa LINE L1 -5111 934 40 2113 116 0 7 chr9 89896583 89896867 -52374577 - AluSq SINE Alu -3 310 29 2876 265 40 33 chr9 89896867 89896908 -52374536 - L1MCa LINE L1 -6005 40 1 491 25 12 38 chr9 89898116 89898196 -52373248 + (CA)n Simple_repeat Simple_repeat 2 79 0 330 322 0 34 chr9 89898380 89898526 -52372918 + MIR SINE MIR 71 211 -51 21 36 0 0 chr9 89899417 89899445 -52371999 + AT_rich Low_complexity Low_complexity 1 28 0 589 205 81 74 chr9 89900043 89900301 -52371143 + L1MC5 LINE L1 7538 7797 -164 533 219 49 8 chr9 89900333 89900456 -52370988 - MER53 DNA DNA -57 132 5 236 267 105 9 chr9 89900741 89900846 -52370598 + MIR SINE MIR 77 191 -71 2669 29 3 13 chr9 89901170 89901477 -52369967 + AluY SINE Alu 1 304 -7 2659 145 32 52 chr9 89902017 89902055 -52369389 - L1MA9 LINE L1 -5 6307 6270 3518 139 27 16 chr9 89902055 89902681 -52368763 + L1MA7 LINE L1 5659 6291 0 2659 145 32 52 chr9 89902681 89903004 -52368440 - L1MA9 LINE L1 -42 6270 5958 1648 188 129 93 chr9 89903004 89903594 -52367850 - LTR36 LTR ERV1 0 611 1 2659 145 32 52 chr9 89903594 89903791 -52367653 - L1MA9 LINE L1 -354 5958 5759 4313 132 3 3 chr9 89904203 89904838 -52366606 + MER41B LTR ERV1 1 635 0 2789 213 30 60 chr9 89904924 89905373 -52366071 + MER21B LTR ERV1 11 429 -434 2172 113 10 7 chr9 89905373 89905682 -52365762 - AluSx SINE Alu -2 310 1 2789 213 30 60 chr9 89905682 89905997 -52365447 + MER21B LTR ERV1 429 752 -111 372 280 51 25 chr9 89906060 89906217 -52365227 - MIR SINE MIR -81 181 21 226 293 73 12 chr9 89907542 89907624 -52363820 - L2 LINE L2 -53 3219 3133 751 196 21 0 chr9 89907735 89907878 -52363566 + L1MB2 LINE L1 5640 5785 -549 1563 167 46 0 chr9 89907889 89908194 -52363250 + L1MB2 LINE L1 5851 6169 -2 828 217 38 0 chr9 89909122 89909279 -52362165 + MER20 DNA MER1_type 56 218 -1 2064 132 0 0 chr9 89909825 89910133 -52361311 + AluSg SINE Alu 1 308 0 1074 271 13 23 chr9 89910358 89910664 -52360780 - MLT1E LTR MaLR -11 582 280 328 297 101 7 chr9 89911218 89911356 -52360088 + MIR SINE MIR 13 163 -99 2078 154 0 0 chr9 89911356 89911654 -52359790 - AluSx SINE Alu -14 298 1 315 49 0 0 chr9 89912503 89912544 -52358900 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 439 259 30 7 chr9 89913091 89913226 -52358218 + (CA)n Simple_repeat Simple_repeat 1 138 0 1512 134 0 8 chr9 89913590 89913837 -52357607 - L1MA9 LINE L1 -370 5942 5698 * 2289 174 11 56 chr9 89913831 89914364 -52357080 + L1 LINE L1 4626 5134 -1012 284 257 40 0 chr9 89914658 89914759 -52356685 + MER5A DNA MER1_type 24 128 -61 3055 96 31 24 chr9 89916185 89916635 -52354809 - MER41A LTR ERV1 -88 466 14 2091 102 16 3 chr9 89916636 89916940 -52354504 - MER41A-int LTR ERV1 -218 5728 5421 3454 151 32 104 chr9 89917040 89917877 -52353567 - MER41B-int LTR ERV1 -3905 3911 3135 4870 150 40 0 chr9 89917920 89918678 -52352766 - MER41B-int LTR ERV1 -5087 859 72 2369 98 0 0 chr9 89918840 89919146 -52352298 + AluSg SINE Alu 1 306 -4 309 158 35 18 chr9 89919182 89919239 -52352205 - MER41B-int LTR ERV1 -5888 58 1 329 126 207 35 chr9 89919248 89919335 -52352109 - MER41B-int LTR ERV1 -5844 102 1 967 91 0 0 chr9 89919335 89919467 -52351977 - MER41B LTR ERV1 0 635 504 3924 173 26 39 chr9 89919480 89920436 -52351008 + pTR5 LTR ERV1 738 2007 -431 290 314 110 0 chr9 89920465 89920583 -52350861 - pTR5 LTR ERV1 -1570 868 738 602 167 0 24 chr9 89920597 89920723 -52350721 + MER41A LTR ERV1 422 544 -10 2111 122 0 10 chr9 89921131 89921426 -52350018 - AluSx SINE Alu -20 292 1 1745 307 115 27 chr9 89921460 89922845 -52348599 - L2 LINE L2 -4 3309 1789 279 226 153 22 chr9 89924477 89924614 -52346830 + MLT2B3 LTR ERVL 18 172 -382 884 213 50 45 chr9 89924684 89924955 -52346489 + MLT2B3 LTR ERVL 219 551 -3 195 42 0 0 chr9 89924955 89924979 -52346465 + (CA)n Simple_repeat Simple_repeat 2 25 0 3668 64 0 0 chr9 89924979 89925434 -52346010 - L1PA8 LINE L1 -8 6164 5710 431 335 29 0 chr9 89925566 89925772 -52345672 - MLT1J2 LTR MaLR -238 212 1 376 209 146 44 chr9 89925996 89926154 -52345290 - L1M4 LINE L1 -1300 4846 4673 738 254 183 52 chr9 89926165 89926601 -52344843 - L1MC/D LINE L1 -381 5803 5328 325 184 0 46 chr9 89927809 89927896 -52343548 + MER53 DNA DNA 2 84 -105 1000 127 19 6 chr9 89928107 89928264 -52343180 + AluSp SINE Alu 1 159 -154 246 310 47 47 chr9 89928685 89928814 -52342630 + L2 LINE L2 3185 3313 0 1757 151 40 68 chr9 89929321 89929719 -52341725 - MLT1B LTR MaLR -2 388 2 1882 271 149 11 chr9 89929754 89930581 -52340863 + MER69 DNA AcHobo 18 958 -1568 397 219 174 7 chr9 89930570 89930725 -52340719 + MER69 DNA AcHobo 2280 2460 -66 * 418 100 38 0 chr9 89931692 89931772 -52339672 + L1MA7 LINE L1 6201 6283 -8 2497 229 30 21 chr9 89932616 89932799 -52338645 - L1M4 LINE L1 -3202 2944 2764 5574 68 1 4 chr9 89932799 89933509 -52337935 + L1PA8 LINE L1 5465 6172 0 2497 229 30 21 chr9 89933509 89934092 -52337352 - L1M4 LINE L1 -3382 2764 2171 2286 106 3 0 chr9 89935195 89935498 -52335946 - AluSx SINE Alu 0 312 9 700 277 28 0 chr9 89935992 89936169 -52335275 + AluJo SINE Alu 115 296 -16 366 80 0 0 chr9 89938612 89938662 -52332782 + L1MB3 LINE L1 6055 6104 -79 231 222 14 0 chr9 89938676 89938748 -52332696 + (TATAA)n Simple_repeat Simple_repeat 1 73 0 349 212 24 0 chr9 89938847 89938932 -52332512 + L1MB2 LINE L1 6078 6164 -7 239 250 40 53 chr9 89939006 89939082 -52332362 + MLT1H1 LTR MaLR 115 189 -366 746 173 6 0 chr9 89939082 89939244 -52332200 + CT-rich Low_complexity Low_complexity 1 163 0 1126 105 33 0 chr9 90140963 90141115 -52130329 - AluSq SINE Alu -156 157 1 2210 166 40 98 chr9 90142695 90143115 -52128329 + MER44D DNA MER2_type 2 435 -2052 2323 97 3 0 chr9 90143115 90143404 -52128040 + AluSx SINE Alu 1 290 -22 2210 166 40 98 chr9 90143404 90143566 -52127878 + MER44D DNA MER2_type 435 605 0 1849 216 15 68 chr9 90143671 90143849 -52127595 + L1M4 LINE L1 4674 4860 -1286 2119 144 0 0 chr9 90143849 90144147 -52127297 - AluSx SINE Alu -14 298 1 1849 216 15 68 chr9 90144147 90144225 -52127219 + L1M4 LINE L1 4860 4941 -1205 872 169 0 0 chr9 90144225 90144355 -52127089 + FLAM_C SINE Alu 1 130 -3 1849 216 15 68 chr9 90144355 90144490 -52126954 + L1M4 LINE L1 4941 5033 -1113 2364 94 0 3 chr9 90144490 90144789 -52126655 + AluY SINE Alu 1 298 -13 1849 216 15 68 chr9 90144789 90144922 -52126522 + L1M4 LINE L1 5033 5172 -974 2065 136 0 0 chr9 90144994 90145273 -52126171 + AluSx SINE Alu 4 282 -30 2334 98 0 0 chr9 90145414 90145711 -52125733 - AluY SINE Alu -14 297 1 320 43 0 0 chr9 90146044 90146090 -52125354 - AluSp/q SINE Alu -2 301 256 2175 113 37 0 chr9 90146462 90146762 -52124682 + AluSq SINE Alu 1 311 -2 470 135 11 22 chr9 90146974 90147063 -52124381 + AluJb SINE Alu 44 131 -181 2006 160 0 0 chr9 90147084 90147391 -52124053 + AluJb SINE Alu 1 307 -5 678 152 0 9 chr9 90148241 90148353 -52123091 + FLAM_C SINE Alu 1 111 -32 1220 216 41 19 chr9 90148561 90148876 -52122568 - MER33 DNA MER1_type -2 322 1 1589 183 3 28 chr9 90149067 90149357 -52122087 + AluJo SINE Alu 30 312 0 2310 165 46 40 chr9 90149478 90149601 -52121843 - LTR42 LTR ERVL 0 495 374 2496 74 3 3 chr9 90149601 90149911 -52121533 + AluSg SINE Alu 1 310 0 2310 165 46 40 chr9 90149911 90150242 -52121202 - LTR42 LTR ERVL -121 374 38 30 27 0 0 chr9 90150352 90150389 -52121055 + AT_rich Low_complexity Low_complexity 1 37 0 789 199 35 0 chr9 90150395 90150536 -52120908 - FRAM SINE Alu -16 150 5 2220 123 0 0 chr9 90150543 90150835 -52120609 - AluSg SINE Alu -18 292 1 216 0 0 0 chr9 90151541 90151565 -52119879 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2269 80 0 3 chr9 90151565 90151851 -52119593 + AluSg SINE Alu 23 307 -3 1508 248 122 58 chr9 90151982 90152391 -52119053 - HAL1 LINE L1 -1253 1254 873 1682 179 0 17 chr9 90152391 90152693 -52118751 - AluJo SINE Alu -15 297 1 1508 248 122 58 chr9 90152693 90153127 -52118317 - HAL1 LINE L1 -1634 873 357 298 252 15 89 chr9 90153129 90153175 -52118269 - HAL1 LINE L1 -2261 246 198 1989 139 0 17 chr9 90153175 90153493 -52117951 + AluSx SINE Alu 1 312 0 298 252 15 89 chr9 90153493 90153581 -52117863 - HAL1 LINE L1 -2309 198 122 856 247 124 120 chr9 90153596 90153931 -52117513 + MLT1G LTR MaLR 15 347 -243 2348 93 3 10 chr9 90153931 90154243 -52117201 - AluSx SINE Alu -2 310 1 866 118 0 52 chr9 90154252 90154388 -52117056 - FLAM_C SINE Alu 0 133 5 856 247 124 120 chr9 90154388 90154402 -52117042 + MLT1G LTR MaLR 354 366 -224 2225 103 0 3 chr9 90154402 90154694 -52116750 - AluSx SINE Alu -21 291 1 856 247 124 120 chr9 90154694 90154921 -52116523 + MLT1G LTR MaLR 366 590 0 1209 146 0 0 chr9 90154925 90155103 -52116341 - AluSg/x SINE Alu 0 312 135 1046 210 46 13 chr9 90155123 90155361 -52116083 + LTR48B LTR ERV1 396 641 -3 1174 100 28 22 chr9 90155508 90155688 -52115756 - L1PA16 LINE L1 -1 6165 5985 316 167 9 74 chr9 90155723 90155759 -52115685 - L1PA16 LINE L1 -139 6027 5990 1975 117 34 3 chr9 90155759 90156057 -52115387 - AluSx SINE Alu -5 307 1 316 167 9 74 chr9 90156057 90156128 -52115316 - L1PA16 LINE L1 -176 5990 5927 2358 71 0 16 chr9 90156128 90156438 -52115006 - AluSc SINE Alu -4 305 1 243 152 0 0 chr9 90157153 90157199 -52114245 - LTR66 LTR ERVL -171 439 394 * 261 109 0 0 chr9 90157161 90157207 -52114237 + LTR66 LTR ERVL 394 439 -171 2424 68 3 3 chr9 90157213 90157508 -52113936 - AluSx SINE Alu -17 295 1 2001 204 62 0 chr9 90157610 90158011 -52113433 + MSTB LTR MaLR 1 426 0 2113 107 38 0 chr9 90158477 90158766 -52112678 - AluSx SINE Alu -12 300 1 2270 103 0 3 chr9 90158989 90159291 -52112153 - AluSq SINE Alu -12 301 1 313 98 0 0 chr9 90159842 90159883 -52111561 - FLAM SINE Alu -7 126 86 3374 164 39 54 chr9 90159883 90160416 -52111028 - L1M4 LINE L1 -404 6278 5738 1511 159 191 3 chr9 90160416 90160699 -52110745 + MER1B DNA MER1_type 2 337 0 3374 164 39 54 chr9 90160699 90161509 -52109935 - L1M4 LINE L1 -944 5738 4955 2082 148 9 3 chr9 90161513 90161858 -52109586 - MST-int LTR MaLR -1304 347 1 * 2116 178 23 42 chr9 90161860 90161912 -52109532 - MSTB LTR MaLR -2 424 373 1870 153 23 13 chr9 90161912 90162220 -52109224 - AluSx SINE Alu -1 311 1 2116 178 23 42 chr9 90162220 90162599 -52108845 - MSTB LTR MaLR -53 373 1 2336 220 64 17 chr9 90162599 90162982 -52108462 - L1M4 LINE L1 -1691 4953 4522 1934 150 0 50 chr9 90162982 90163176 -52108268 - AluJo SINE Alu -8 304 131 2310 101 0 0 chr9 90163176 90163464 -52107980 + AluSg SINE Alu 1 288 -22 1934 150 0 50 chr9 90163464 90163589 -52107855 - AluJo SINE Alu -181 131 1 2336 220 64 17 chr9 90163589 90163852 -52107592 - L1M4 LINE L1 -2122 4522 4273 5372 154 32 59 chr9 90163858 90164418 -52107026 - L1MC1 LINE L1 -5 6328 5755 308 98 0 0 chr9 90164418 90164459 -52106985 + 5S rRNA rRNA 2 42 -79 5372 154 32 59 chr9 90164459 90164935 -52106509 - L1MC1 LINE L1 -578 5755 5292 2216 135 0 0 chr9 90164935 90165239 -52106205 - AluSx SINE Alu -6 306 3 5372 154 32 59 chr9 90165239 90165353 -52106091 - L1MC1 LINE L1 -1041 5292 5176 1772 237 163 33 chr9 90165345 90165701 -52105743 - L1M4 LINE L1 -2362 4282 3974 * 2022 35 151 8 chr9 90165701 90165960 -52105484 - AluY SINE Alu -15 296 1 1772 237 163 33 chr9 90165960 90166204 -52105240 - L1M4 LINE L1 -2670 3974 3763 1085 178 6 0 chr9 90166204 90166378 -52105066 - FAM SINE Alu 0 175 1 1772 237 163 33 chr9 90166378 90166651 -52104793 - L1M4 LINE L1 -2881 3763 3294 2624 123 20 10 chr9 90166654 90167052 -52104392 + MER39B LTR ERV1 3 407 -246 2056 147 13 0 chr9 90167052 90167358 -52104086 - AluSq SINE Alu -3 310 1 289 296 51 20 chr9 90167376 90167572 -52103872 - L1M4 LINE L1 -4180 2466 2265 460 286 48 5 chr9 90167593 90167782 -52103662 - L1M4 LINE L1 -4488 2158 1962 2193 110 10 0 chr9 90167815 90168106 -52103338 + AluSx SINE Alu 1 294 -18 6165 214 47 31 chr9 90168110 90168527 -52102917 - L1M4 LINE L1 -4944 1598 1189 2399 79 0 0 chr9 90168527 90168819 -52102625 + AluY SINE Alu 6 297 -14 6165 214 47 31 chr9 90168819 90169960 -52101484 - L1M4 LINE L1 -5353 1189 16 1163 203 225 9 chr9 90170191 90170319 -52101125 + MSTD LTR MaLR 1 100 -296 2449 75 7 3 chr9 90170319 90170624 -52100820 + AluSp SINE Alu 1 306 -7 1163 203 225 9 chr9 90170624 90170820 -52100624 + MSTD LTR MaLR 100 395 -1 847 76 0 0 chr9 90171106 90171211 -52100233 - U6 snRNA snRNA -2 105 1 21 36 0 0 chr9 90171221 90171249 -52100195 + AT_rich Low_complexity Low_complexity 1 28 0 251 28 28 0 chr9 90171344 90171380 -52100064 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1815 147 33 4 chr9 90171380 90171652 -52099792 - AluSx SINE Alu -32 280 1 405 282 135 6 chr9 90172352 90172515 -52098929 + MER5A DNA MER1_type 4 187 -2 291 149 127 97 chr9 90173005 90173139 -52098305 + MIR SINE MIR 125 262 0 665 180 79 21 chr9 90173294 90173483 -52097961 + MER63 DNA MER1_type 1 200 -730 512 131 10 0 chr9 90173567 90173666 -52097778 + MER63 DNA MER1_type 871 970 -91 2406 137 32 0 chr9 90173771 90174115 -52097329 + THE1B LTR MaLR 10 364 0 12091 88 8 3 chr9 90174115 90175687 -52095757 + THE1B-int LTR MaLR 1 1580 0 2080 144 67 14 chr9 90175687 90176033 -52095411 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr9 90176056 90176077 -52095367 + AT_rich Low_complexity Low_complexity 1 21 0 2018 109 42 0 chr9 90176087 90176370 -52095074 + AluSq SINE Alu 1 295 -18 33 56 0 0 chr9 90176466 90176520 -52094924 + AT_rich Low_complexity Low_complexity 1 54 0 746 245 50 0 chr9 90176550 90176709 -52094735 - AluJb SINE Alu -12 300 134 2803 10 0 0 chr9 90177154 90177451 -52093993 + AluYb8 SINE Alu 1 297 -21 5352 179 47 32 chr9 90177620 90178481 -52092963 - L1MA10 LINE L1 -8 6326 5480 2493 113 8 3 chr9 90178481 90178843 -52092601 + THE1B LTR MaLR 1 364 0 5352 179 47 32 chr9 90178843 90179416 -52092028 - L1MA10 LINE L1 -854 5480 4917 2014 117 4 4 chr9 90179416 90179690 -52091754 + AluSc SINE Alu 23 296 -13 5352 179 47 32 chr9 90179690 90179939 -52091505 - L1MA10 LINE L1 -1417 4917 2655 285 165 0 33 chr9 90179955 90180046 -52091398 + (TA)n Simple_repeat Simple_repeat 1 88 0 230 229 43 14 chr9 90180084 90180154 -52091290 + L1MDa LINE L1 2484 2555 -3985 204 40 0 0 chr9 90180155 90180180 -52091264 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chr9 90180179 90180206 -52091238 + (GA)n Simple_repeat Simple_repeat 2 28 0 1944 129 0 7 chr9 90180207 90180486 -52090958 - AluSx SINE Alu -35 277 1 1531 249 31 18 chr9 90180491 90181097 -52090347 - L1MEc LINE L1 -3529 2686 2116 * 5263 133 8 0 chr9 90181076 90181870 -52089574 - L1PA16 LINE L1 -3 6232 5433 900 229 96 72 chr9 90181865 90182349 -52089095 - L1PA12 LINE L1 -4956 2620 2182 * 233 385 0 0 chr9 90182973 90183051 -52088393 - L1PA12 LINE L1 -5400 2181 2104 * 319 322 68 8 chr9 90183029 90183147 -52088297 - L1PA12 LINE L1 -5276 2298 2174 727 278 70 67 chr9 90183181 90183627 -52087817 - L1PA12 LINE L1 -6200 1374 928 1040 220 74 22 chr9 90183656 90183979 -52087465 - L1MEc LINE L1 -4273 2123 1784 1066 109 0 0 chr9 90183979 90184116 -52087328 - AluSc SINE Alu -16 293 157 2028 243 54 54 chr9 90184393 90184753 -52086691 + L1 LINE L1 3257 3616 -2530 1652 213 40 6 chr9 90184753 90185106 -52086338 - MLT1A1 LTR MaLR 0 365 1 2028 243 54 54 chr9 90185106 90185542 -52085902 + L1 LINE L1 3615 4053 -2093 486 49 0 0 chr9 90185731 90185792 -52085652 + (CCA)n Simple_repeat Simple_repeat 3 63 0 423 0 0 0 chr9 90186878 90186925 -52084519 + (CA)n Simple_repeat Simple_repeat 1 47 0 1905 222 49 32 chr9 90186925 90187555 -52083889 + L1 LINE L1 4057 4697 -1449 2331 101 0 10 chr9 90187600 90187906 -52083538 - AluSx SINE Alu -9 303 1 325 264 75 21 chr9 90188073 90188312 -52083132 - L1M4 LINE L1 -1438 4708 4457 2141 127 3 0 chr9 90188504 90188795 -52082649 - AluSx SINE Alu -20 292 1 406 294 42 61 chr9 90188877 90189091 -52082353 + L2 LINE L2 2596 2805 -509 2179 107 0 3 chr9 90189467 90189756 -52081688 + AluY SINE Alu 1 288 -23 23 0 0 0 chr9 90189756 90189779 -52081665 + AT_rich Low_complexity Low_complexity 1 23 0 474 229 8 0 chr9 90189779 90189910 -52081534 + L1 LINE L1 5191 5322 -824 604 266 105 60 chr9 90191634 90192336 -52079108 + HSREP522 Satellite telomeric 1 733 -224 2069 111 7 0 chr9 90193336 90193634 -52077810 - AluSx SINE Alu -12 300 1 3779 162 42 8 chr9 90194074 90194740 -52076704 + L1MC1 LINE L1 5451 6139 -194 1926 135 52 39 chr9 90196010 90196219 -52075225 - MLT1B LTR MaLR 0 390 172 2231 91 3 0 chr9 90196219 90196516 -52074928 - AluSp SINE Alu -11 302 5 1926 135 52 39 chr9 90196516 90196691 -52074753 - MLT1B LTR MaLR -218 172 1 2023 104 0 35 chr9 90196803 90197120 -52074324 - AluY SINE Alu -3 308 3 1821 92 96 4 chr9 90197392 90197663 -52073781 + AluSp SINE Alu 2 297 -16 2064 125 3 0 chr9 90197778 90198082 -52073362 - AluSx SINE Alu -7 305 1 2159 97 3 0 chr9 90198552 90198852 -52072592 + AluSc SINE Alu 1 301 -8 2105 110 10 0 chr9 90199344 90199645 -52071799 - AluSg SINE Alu -6 304 1 1215 184 51 30 chr9 90199762 90199794 -52071650 + MER6A DNA MER2_type -8 22 -321 1401 151 88 28 chr9 90199794 90200078 -52071366 - AluJo SINE Alu -11 301 1 1215 184 51 30 chr9 90200078 90200319 -52071125 + MER6A DNA MER2_type 22 266 -77 800 133 15 30 chr9 90200306 90200441 -52071003 + MER6A DNA MER2_type 473 605 0 * 1200 197 43 86 chr9 90200441 90200706 -52070738 - MLT1B LTR MaLR -32 358 110 1882 118 39 0 chr9 90200706 90200985 -52070459 - AluSx SINE Alu -22 290 1 1200 197 43 86 chr9 90200985 90201069 -52070375 - MLT1B LTR MaLR -280 110 24 302 236 28 0 chr9 90201809 90201881 -52069563 + MER5A DNA MER1_type 1 74 -115 890 179 0 6 chr9 90201881 90202037 -52069407 + AluJb SINE Alu 134 288 -24 479 145 13 0 chr9 90202037 90202113 -52069331 + MER5A DNA MER1_type 66 142 -47 629 168 28 89 chr9 90202130 90202276 -52069168 + MER53 DNA DNA 22 175 -14 207 0 0 0 chr9 90202276 90202299 -52069145 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2135 93 0 0 chr9 90202302 90202581 -52068863 - AluSg SINE Alu -31 279 1 629 168 28 89 chr9 90202581 90202609 -52068835 + MER53 DNA DNA 177 189 0 280 163 0 0 chr9 90202611 90202654 -52068790 + MER5A DNA MER1_type 147 189 0 1878 132 21 0 chr9 90203354 90203642 -52067802 + AluJb SINE Alu 1 294 -18 185 0 0 39 chr9 90203726 90203752 -52067692 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 1702 123 31 48 chr9 90204141 90204302 -52067142 - AluSq SINE Alu -17 296 141 2247 77 0 0 chr9 90204302 90204589 -52066855 - AluY SINE Alu -24 287 1 1702 123 31 48 chr9 90204589 90204720 -52066724 - AluSq SINE Alu -172 141 9 2234 92 13 0 chr9 90205160 90205465 -52065979 - AluSp SINE Alu -4 309 1 2028 130 0 0 chr9 90205813 90206133 -52065311 + AluSx SINE Alu 1 320 0 1956 124 13 0 chr9 90206786 90207084 -52064360 - AluSx SINE Alu -10 302 1 6819 198 11 25 chr9 90207841 90209416 -52062028 + L1 LINE L1 3192 4745 -1401 2077 102 7 0 chr9 90209591 90209874 -52061570 + AluSx SINE Alu 9 293 -19 500 249 98 0 chr9 90209940 90210165 -52061279 + HAL1b LINE L1 933 1179 -169 315 251 203 82 chr9 90210284 90210377 -52061067 + L1ME4a LINE L1 5812 5892 -229 2058 123 0 10 chr9 90210377 90210677 -52060767 + AluSx SINE Alu 1 297 -15 315 251 203 82 chr9 90210677 90210790 -52060654 + L1ME4a LINE L1 5892 6043 -78 1497 182 44 0 chr9 90210799 90210953 -52060491 - AluSx SINE Alu -25 287 114 183 42 0 0 chr9 90210953 90210977 -52060467 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1497 182 44 0 chr9 90210977 90211097 -52060347 - AluSx SINE Alu -198 114 1 1280 177 26 113 chr9 90211166 90211621 -52059823 - MLT2B1 LTR ERVL 0 414 1 4231 83 61 0 chr9 90213063 90213638 -52057806 - LTR66 LTR ERVL 0 610 1 2145 107 3 0 chr9 90213881 90214179 -52057265 - AluSg SINE Alu -10 300 2 2260 101 0 7 chr9 90214962 90215270 -52056174 + AluSq SINE Alu 1 306 -7 2600 99 96 13 chr9 90215359 90215754 -52055690 + MSTA LTR MaLR 1 428 0 2063 123 0 0 chr9 90215826 90216110 -52055334 + AluSq SINE Alu 1 284 -29 2042 124 0 0 chr9 90216277 90216595 -52054849 + AluSx SINE Alu 3 320 0 1956 124 13 0 chr9 90217248 90217546 -52053898 - AluSx SINE Alu -10 302 1 1206 246 28 13 chr9 90218303 90218693 -52052751 + L1PB2 LINE L1 3192 3587 -2559 324 276 13 64 chr9 90218819 90219059 -52052385 + GA-rich Low_complexity Low_complexity 1 227 0 5872 143 39 21 chr9 90219237 90219661 -52051783 + L1PB2 LINE L1 4392 4807 -1344 2214 94 0 0 chr9 90219661 90219958 -52051486 + AluY SINE Alu 1 297 -14 5872 143 39 21 chr9 90219958 90220179 -52051265 + L1PB2 LINE L1 4807 5022 -1129 2807 116 11 39 chr9 90220179 90220619 -52050825 - MSTA LTR MaLR 0 428 1 5872 143 39 21 chr9 90220619 90220901 -52050543 + L1PB2 LINE L1 5022 5297 -854 189 0 0 0 chr9 90220901 90220922 -52050522 + (TAA)n Simple_repeat Simple_repeat 2 22 0 5872 143 39 21 chr9 90220922 90221739 -52049705 + L1PB2 LINE L1 5297 6151 0 343 325 0 8 chr9 90222229 90222346 -52049098 + (CA)n Simple_repeat Simple_repeat 2 117 0 1594 158 29 7 chr9 90222472 90222751 -52048693 + AluJo SINE Alu 6 290 -22 283 215 271 19 chr9 90223161 90223268 -52048176 - L1MB7 LINE L1 -1 6177 6044 310 267 86 17 chr9 90223281 90223397 -52048047 - HAL1b LINE L1 -547 801 678 207 321 109 0 chr9 90224710 90224903 -52046541 + L2 LINE L2 2363 2576 -738 1209 201 55 109 chr9 90225177 90225580 -52045864 - MLT1B LTR MaLR -8 382 2 422 266 139 6 chr9 90226405 90226563 -52044881 - L1ME2 LINE L1 -10 6154 5976 2114 100 10 7 chr9 90227004 90227335 -52044109 + AluSp SINE Alu 1 313 0 326 380 8 23 chr9 90227395 90227524 -52043920 - L2 LINE L2 -1 3271 3145 457 288 100 80 chr9 90227566 90228017 -52043427 - MLT1H LTR MaLR -33 516 57 368 274 161 43 chr9 90228039 90228271 -52043173 - L2 LINE L2 -261 3052 2849 2281 93 0 7 chr9 90228271 90228581 -52042863 - AluSx SINE Alu -4 308 1 368 274 161 43 chr9 90228581 90228790 -52042654 - L2 LINE L2 -464 2849 2548 446 224 82 52 chr9 90228836 90228970 -52042474 + MLT1G LTR MaLR 4 141 -449 262 218 10 30 chr9 90228984 90229085 -52042359 + (CATATA)n Simple_repeat Simple_repeat 1 99 0 4298 154 41 91 chr9 90229088 90229676 -52041768 + MER21A LTR ERV1 14 537 -394 2358 67 3 0 chr9 90229676 90229974 -52041470 + AluSp SINE Alu 1 299 -14 4298 154 41 91 chr9 90229974 90230351 -52041093 + MER21A LTR ERV1 537 931 0 592 292 42 16 chr9 90230351 90230540 -52040904 + MLT1G LTR MaLR 135 328 -262 682 179 74 62 chr9 90230557 90230719 -52040725 - MER21A LTR ERV1 -472 459 296 474 261 148 11 chr9 90230713 90230889 -52040555 + MLT1G LTR MaLR 311 510 -80 * 982 216 71 67 chr9 90230920 90231172 -52040272 - LTR56 LTR ERV1 0 445 189 1996 113 3 7 chr9 90231172 90231472 -52039972 - AluSc SINE Alu -10 299 1 982 216 71 67 chr9 90231472 90231654 -52039790 - LTR56 LTR ERV1 -256 189 9 257 86 0 0 chr9 90231667 90231702 -52039742 + MLT1G LTR MaLR 514 548 -42 959 147 0 29 chr9 90231702 90231872 -52039572 - FRAM SINE Alu -2 174 10 4366 116 14 2 chr9 90232130 90232749 -52038695 - MER41B LTR ERV1 -8 627 1 2200 84 3 0 chr9 90233660 90233967 -52037477 - AluSp SINE Alu 0 308 1 3733 184 44 70 chr9 90234263 90234833 -52036611 - L1MD1 LINE L1 0 6242 5703 1952 134 0 7 chr9 90234833 90235131 -52036313 - AluSx SINE Alu -16 296 1 3733 184 44 70 chr9 90235131 90235528 -52035916 - L1MD1 LINE L1 -539 5703 5297 183 80 0 0 chr9 90235931 90235956 -52035488 + (T)n Simple_repeat Simple_repeat 1 25 0 210 232 43 29 chr9 90236022 90236091 -52035353 + MER5A DNA MER1_type 117 186 -3 2002 132 0 7 chr9 90236562 90236866 -52034578 - AluSx SINE Alu -10 302 1 1660 182 89 89 chr9 90237755 90238216 -52033228 + MER65C LTR ERV1 1 461 0 2059 126 0 3 chr9 90238293 90238594 -52032850 + AluSq SINE Alu 1 300 -13 2340 81 10 3 chr9 90238624 90238920 -52032524 + AluY SINE Alu 1 298 -13 1237 221 31 65 chr9 90239545 90239866 -52031578 - MER58B DNA MER1_type -4 337 28 1034 200 61 27 chr9 90240377 90240699 -52030745 + LTR26 LTR ERV1 277 589 -14 2193 95 0 46 chr9 90241051 90241357 -52030087 - AluSg1 SINE Alu -17 292 1 240 245 0 0 chr9 90241370 90241423 -52030021 + MIR SINE MIR 103 155 -107 29 28 0 0 chr9 90241869 90241905 -52029539 + AT_rich Low_complexity Low_complexity 1 36 0 1309 157 0 5 chr9 90241918 90242116 -52029328 - AluJb SINE Alu -115 197 1 2252 94 28 0 chr9 90243124 90243412 -52028032 + AluSg SINE Alu 2 297 -13 468 0 0 0 chr9 90243785 90243837 -52027607 + (TA)n Simple_repeat Simple_repeat 2 53 0 2245 124 3 0 chr9 90243837 90244143 -52027301 - AluSx SINE Alu -5 307 1 2049 129 10 3 chr9 90245483 90245778 -52025666 - AluSx SINE Alu -15 297 1 24 0 0 0 chr9 90246747 90246771 -52024673 + AT_rich Low_complexity Low_complexity 1 24 0 2059 108 14 0 chr9 90246956 90247233 -52024211 + AluSg SINE Alu 2 282 -28 402 244 113 16 chr9 90247280 90247586 -52023858 - LTR16A LTR ERVL -12 438 43 416 257 99 0 chr9 90247856 90247957 -52023487 - L2 LINE L2 -1 3312 3202 340 268 144 0 chr9 90248091 90248188 -52023256 - L2 LINE L2 -1 3312 3202 544 122 8 183 chr9 90248191 90248322 -52023122 - MLT2C1 LTR ERVL -52 345 238 2410 102 0 3 chr9 90248624 90248929 -52022515 - AluSq SINE Alu -9 304 1 1328 215 76 101 chr9 90249250 90249827 -52021617 - MER34B LTR ERV1 0 565 3 2300 107 7 0 chr9 90249968 90250267 -52021177 + AluSx SINE Alu 1 301 -11 2201 106 17 0 chr9 90250919 90251211 -52020233 - AluSx SINE Alu -15 297 1 782 165 0 24 chr9 90251224 90251351 -52020093 - FLAM_C SINE Alu -18 125 2 469 211 14 68 chr9 90251360 90251507 -52019937 - L1ME1 LINE L1 -298 5868 5730 1096 101 40 0 chr9 90251740 90251888 -52019556 - AluSg/x SINE Alu -18 294 141 1679 123 0 0 chr9 90251894 90252122 -52019322 + AluSq SINE Alu 65 292 -21 2830 190 58 14 chr9 90252123 90252814 -52018630 + L1 LINE L1 3128 3848 -2298 995 293 101 55 chr9 90252819 90253512 -52017932 + L2 LINE L2 2346 3081 -232 2315 99 7 0 chr9 90253583 90253885 -52017559 - AluSx SINE Alu -8 304 1 287 319 0 9 chr9 90254716 90254832 -52016612 + HAL1 LINE L1 1654 1768 -739 598 232 14 0 chr9 90254835 90254977 -52016467 + HAL1 LINE L1 2237 2380 -127 229 221 265 0 chr9 90254992 90255060 -52016384 - MER81 DNA DNA -3 111 26 22 56 0 0 chr9 90255839 90255875 -52015569 + AT_rich Low_complexity Low_complexity 1 36 0 304 301 49 0 chr9 90256009 90256152 -52015292 + L1M4 LINE L1 3076 3225 -2921 2814 131 73 9 chr9 90256277 90256728 -52014716 + LTR12 LTR ERV1 1 480 -234 2359 92 13 0 chr9 90257038 90257343 -52014101 + AluSp SINE Alu 1 309 -4 1825 130 30 47 chr9 90257775 90257914 -52013530 + AluSq SINE Alu 1 141 -172 2378 77 0 0 chr9 90257914 90258201 -52013243 + AluY SINE Alu 1 287 -24 1825 130 30 47 chr9 90258201 90258362 -52013082 + AluSq SINE Alu 141 296 -17 185 0 0 39 chr9 90258751 90258777 -52012667 + (TAAAAA)n Simple_repeat Simple_repeat 6 30 0 2239 106 0 3 chr9 90258861 90259154 -52012290 - AluY SINE Alu -19 292 1 379 333 31 31 chr9 90259530 90259689 -52011755 - L2 LINE L2 -509 2805 2647 2124 128 3 0 chr9 90259828 90260117 -52011327 + AluSx SINE Alu 1 290 -22 262 267 119 28 chr9 90260184 90260544 -52010900 + L1M4 LINE L1 4316 4708 -1438 196 59 47 71 chr9 90260743 90260828 -52010616 + (TTAAA)n Simple_repeat Simple_repeat 3 85 0 419 294 137 44 chr9 90261125 90261740 -52009704 - L1ME1 LINE L1 -232 5934 5263 2814 131 73 9 chr9 90261791 90262242 -52009202 - LTR12 LTR ERV1 -234 480 1 304 301 49 0 chr9 90262367 90262510 -52008934 - L1ME1 LINE L1 -2921 3225 3076 22 56 0 0 chr9 90262644 90262680 -52008764 + AT_rich Low_complexity Low_complexity 1 36 0 229 221 265 0 chr9 90263459 90263527 -52007917 + MER81 DNA DNA 26 111 -3 598 232 14 0 chr9 90263542 90263684 -52007760 - HAL1 LINE L1 -127 2380 2237 287 319 0 9 chr9 90263687 90263803 -52007641 - HAL1 LINE L1 -739 1768 1654 2315 99 7 0 chr9 90264634 90264936 -52006508 + AluSx SINE Alu 1 304 -8 995 293 101 55 chr9 90265007 90265700 -52005744 - L2 LINE L2 -232 3081 2346 2830 190 58 14 chr9 90265705 90266396 -52005048 - L1 LINE L1 -2298 3848 3128 1679 123 0 0 chr9 90266397 90266625 -52004819 - AluSq SINE Alu -21 292 65 1096 101 40 0 chr9 90266631 90266779 -52004665 + AluSg/x SINE Alu 139 292 -18 469 211 14 68 chr9 90267012 90267159 -52004285 + L1ME1 LINE L1 5730 5868 -298 782 165 0 24 chr9 90267168 90267295 -52004149 + FLAM_C SINE Alu 2 125 -18 2201 106 17 0 chr9 90267308 90267600 -52003844 + AluSx SINE Alu 1 297 -15 2174 124 10 0 chr9 90268254 90268552 -52002892 - AluSx SINE Alu -11 301 1 2261 122 0 3 chr9 90268605 90268916 -52002528 - AluSg SINE Alu 0 310 1 418 272 185 46 chr9 90269047 90269371 -52002073 - HAL1 LINE L1 -741 1766 1398 2551 50 0 0 chr9 90269767 90270066 -52001378 - AluY SINE Alu -12 299 1 25 0 0 0 chr9 90270124 90270149 -52001295 + AT_rich Low_complexity Low_complexity 1 25 0 1792 152 36 4 chr9 90270151 90270428 -52001016 - AluSx SINE Alu -26 286 1 2656 44 0 0 chr9 90271650 90271948 -51999496 - AluY SINE Alu -13 298 1 32 0 0 0 chr9 90271952 90271984 -51999460 + AT_rich Low_complexity Low_complexity 1 32 0 210 154 0 0 chr9 90272508 90272547 -51998897 + T-rich Low_complexity Low_complexity 1 39 0 43331 51 7 1 chr9 90272692 90278528 -51992916 - L1PA4 LINE L1 -277 5878 7 263 268 14 0 chr9 90278533 90278604 -51992840 - L1 LINE L1 -2157 3989 3918 2570 101 96 13 chr9 90278763 90279158 -51992286 + MSTA LTR MaLR 1 428 0 2342 97 23 0 chr9 90279230 90279529 -51991915 + AluSx SINE Alu 1 306 -6 415 291 125 28 chr9 90279692 90280053 -51991391 + L1M4 LINE L1 3322 3717 -2429 1608 148 80 8 chr9 90280080 90280343 -51991101 + AluJo SINE Alu 1 282 -30 1982 121 21 7 chr9 90282466 90282748 -51988696 + AluSx SINE Alu 1 286 -26 348 314 53 50 chr9 90282985 90283288 -51988156 + LTR52-int LTR ERVL 1560 1863 -1693 526 266 26 53 chr9 90283711 90283937 -51987507 + LTR52-int LTR ERVL 2613 2832 -724 3437 143 43 85 chr9 90284281 90284782 -51986662 + LTR58 LTR ERV1 1 467 -212 3100 57 119 5 chr9 90284782 90285218 -51986226 + LTR19A LTR ERV1 1 486 0 3437 143 43 85 chr9 90285218 90285410 -51986034 + LTR58 LTR ERV1 467 665 -14 2188 117 0 3 chr9 90285668 90285967 -51985477 - AluSx SINE Alu -14 298 1 1709 166 41 0 chr9 90286457 90286747 -51984697 + AluJb SINE Alu 1 302 -10 200 222 0 16 chr9 90287045 90287108 -51984336 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2314 97 3 7 chr9 90287120 90287420 -51984024 + AluSg SINE Alu 1 299 -11 265 315 96 27 chr9 90287595 90287741 -51983703 - MIR3 SINE MIR 0 208 53 285 340 160 7 chr9 90287825 90287969 -51983475 - MIR SINE MIR -49 213 48 26 0 0 0 chr9 90288018 90288044 -51983400 + AT_rich Low_complexity Low_complexity 1 26 0 217 293 49 24 chr9 90288832 90288914 -51982530 - MIR3 SINE MIR -2 206 123 562 287 55 8 chr9 90289227 90289481 -51981963 + L1MC4a LINE L1 5907 6172 -1636 837 187 23 0 chr9 90289503 90289674 -51981770 + L1MC4a LINE L1 6420 6594 -1214 470 285 207 4 chr9 90290280 90290536 -51980908 + L3 LINE CR1 1193 1500 -77 729 307 66 26 chr9 90290760 90291133 -51980311 + L1MEc LINE L1 1100 1513 -4883 2437 99 0 0 chr9 90291133 90291435 -51980009 + AluSg SINE Alu 1 302 -8 729 307 66 26 chr9 90291435 90291725 -51979719 + L1MEc LINE L1 1513 1790 -4606 2489 64 0 0 chr9 90291725 90292022 -51979422 + AluY SINE Alu 1 297 -14 2344 101 0 10 chr9 90292028 90292335 -51979109 + AluSc SINE Alu 1 304 -5 2013 143 43 18 chr9 90292380 90292709 -51978735 + MER1B DNA MER1_type 1 337 0 1592 195 90 63 chr9 90293383 90293871 -51977573 - LTR10B LTR ERV1 0 505 5 8662 239 39 26 chr9 90293875 90296110 -51975334 - LTR10B-int LTR ERV1 0 6649 4388 272 282 101 58 chr9 90295963 90296151 -51975293 - HERVKC4 LTR ERVK -2170 3092 2897 * 1880 122 45 3 chr9 90296299 90296587 -51974857 - AluY SINE Alu -2 309 10 2303 87 42 0 chr9 90296856 90297145 -51974299 - AluSx SINE Alu -11 301 1 2184 149 0 0 chr9 90297156 90297499 -51973945 + HERVI LTR ERV1 5209 5551 -2234 * 11286 180 37 22 chr9 90297475 90298773 -51972671 - HERVI LTR ERV1 -5530 2255 978 2462 71 0 3 chr9 90298773 90299069 -51972375 - AluY SINE Alu -16 295 1 11286 180 37 22 chr9 90299069 90299326 -51972118 - HERVI LTR ERV1 -6807 978 726 2334 100 0 0 chr9 90299326 90299617 -51971827 - AluY SINE Alu -20 291 1 11286 180 37 22 chr9 90299617 90300282 -51971162 - HERVI LTR ERV1 -7059 726 1 1619 199 92 55 chr9 90300282 90300769 -51970675 - LTR10B LTR ERV1 0 505 1 447 19 0 0 chr9 90301013 90301065 -51970379 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 5741 114 23 35 chr9 90301068 90301433 -51970011 + MER4D LTR ERV1 1 369 -534 2267 131 0 3 chr9 90301433 90301746 -51969698 - AluSq SINE Alu 0 313 2 5741 114 23 35 chr9 90301746 90302291 -51969153 + MER4D LTR ERV1 369 900 -3 551 15 15 0 chr9 90302292 90302360 -51969084 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 994 99 0 7 chr9 90302361 90302503 -51968941 + MER4A LTR ERV1 2 142 -522 * 997 91 0 0 chr9 90302492 90302624 -51968820 + MER4B LTR ERV1 452 583 -27 * 1041 176 20 0 chr9 90302620 90302819 -51968625 - MLT2D LTR ERVL -51 363 161 315 216 103 76 chr9 90302819 90303004 -51968440 - MER34C LTR ERV1 0 585 396 1731 129 3 105 chr9 90303005 90303057 -51968387 + AluJb SINE Alu 1 57 -255 4109 94 5 0 chr9 90303057 90303608 -51967836 - MER41A LTR ERV1 0 554 1 1731 129 3 105 chr9 90303608 90303887 -51967557 + AluJb SINE Alu 57 298 -14 438 251 58 38 chr9 90303907 90304256 -51967188 - MER34 LTR ERV1 -196 369 1 * 870 176 6 6 chr9 90304256 90304420 -51967024 - MLT2D LTR ERVL -250 164 1 2334 98 0 0 chr9 90304854 90305150 -51966294 - AluSx SINE Alu -11 301 6 2063 116 0 35 chr9 90305403 90305714 -51965730 - AluY SINE Alu -11 300 1 2102 136 3 10 chr9 90306391 90306692 -51964752 - AluSx SINE Alu -13 299 1 258 296 96 30 chr9 90307420 90307433 -51964011 - MER67D LTR ERV1 -3 511 500 2185 136 0 0 chr9 90307433 90307735 -51963709 + AluSx SINE Alu 1 302 -10 258 296 96 30 chr9 90307735 90307856 -51963588 - MER67D LTR ERV1 -14 500 368 1949 159 0 0 chr9 90307862 90308186 -51963258 + AluJb SINE Alu 1 324 0 980 183 24 0 chr9 90308191 90308355 -51963089 + AluJb SINE Alu 140 307 -5 1389 139 185 21 chr9 90308377 90308708 -51962736 - MER67C LTR ERV1 -243 271 12 1858 160 197 2 chr9 90308927 90309333 -51962111 - MER31A LTR ERV1 0 485 1 1551 164 19 26 chr9 90309832 90310144 -51961300 + MER89 LTR ERV1 1 310 -249 2021 156 30 3 chr9 90311265 90311636 -51959808 - MLT1B LTR MaLR -4 386 6 200 239 62 133 chr9 90311739 90311852 -51959592 - MIR SINE MIR -62 146 42 2014 130 23 10 chr9 90312090 90312398 -51959046 + AluSx SINE Alu 1 312 0 183 42 0 0 chr9 90312784 90312808 -51958636 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 543 96 39 10 chr9 90312813 90312917 -51958527 + CT-rich Low_complexity Low_complexity 2 108 0 1653 205 10 10 chr9 90312921 90313233 -51958211 - AluJo SINE Alu 0 312 1 324 259 13 44 chr9 90313235 90313393 -51958051 - L1M4 LINE L1 -1490 4656 4504 2290 129 0 0 chr9 90313393 90313703 -51957741 - AluSx SINE Alu -2 310 1 2110 116 3 29 chr9 90313841 90314152 -51957292 - AluSg SINE Alu -7 303 1 384 243 57 133 chr9 90314154 90314212 -51957232 - L1M4 LINE L1 -1816 4330 4269 1825 135 60 0 chr9 90314212 90314479 -51956965 - AluJb SINE Alu -15 297 15 384 243 57 133 chr9 90314479 90314720 -51956724 - L1M4 LINE L1 -1877 4269 4054 271 330 170 15 chr9 90314881 90315151 -51956293 + L2 LINE L2 2136 2447 -867 2356 101 0 0 chr9 90315163 90315459 -51955985 - AluSx SINE Alu -14 298 3 2110 116 3 29 chr9 90315599 90315910 -51955534 - AluSg SINE Alu -7 303 1 1825 135 60 0 chr9 90315970 90316237 -51955207 - AluJb SINE Alu -15 297 15 237 310 32 60 chr9 90316257 90316605 -51954839 - L1M4 LINE L1 -1869 4277 3940 269 297 10 0 chr9 90316609 90316710 -51954734 + HAL1 LINE L1 1724 1825 -682 266 94 0 19 chr9 90317592 90317645 -51953799 + Alu SINE Alu 251 302 0 482 295 80 49 chr9 90317692 90317889 -51953555 + ERVL LTR ERVL 2300 2510 -3254 2224 118 3 3 chr9 90317889 90318186 -51953258 - AluSx SINE Alu -15 297 1 482 295 80 49 chr9 90318186 90318276 -51953168 + ERVL LTR ERVL 2510 2596 -3168 2474 92 3 0 chr9 90319053 90319358 -51952086 - AluSp SINE Alu -5 308 3 308 209 143 19 chr9 90319364 90319469 -51951975 - L1M4 LINE L1 -3795 2351 2234 2255 109 7 3 chr9 90319708 90320011 -51951433 + AluSc SINE Alu 1 304 -5 228 258 122 42 chr9 90320043 90320256 -51951188 - L1M4 LINE L1 -1355 4791 4562 730 268 137 27 chr9 90321369 90321966 -51949478 - L2 LINE L2 -18 3295 2585 304 322 124 34 chr9 90322156 90322454 -51948990 + L2 LINE L2 2947 3271 -1 217 309 156 23 chr9 90325368 90325522 -51945922 - L2 LINE L2 -41 3272 3140 1965 167 0 3 chr9 90325522 90325821 -51945623 + AluJb SINE Alu 1 298 -14 217 309 156 23 chr9 90325821 90325973 -51945471 - L2 LINE L2 -173 3140 2925 195 313 83 10 chr9 90326018 90326114 -51945330 + L2 LINE L2 3169 3271 -1 380 299 294 5 chr9 90326152 90326373 -51945071 - L2 LINE L2 -543 2771 2487 312 308 95 49 chr9 90326475 90326738 -51944706 - L1ME4a LINE L1 -4 6117 5843 223 291 197 20 chr9 90327024 90327227 -51944217 + MIR SINE MIR 23 261 -1 2465 80 0 10 chr9 90328647 90328958 -51942486 + AluSg SINE Alu 1 308 -2 999 234 150 6 chr9 90328992 90329326 -51942118 + L1MC4a LINE L1 5371 5752 -2056 399 285 146 8 chr9 90329359 90329626 -51941818 + L1MC4a LINE L1 5830 6133 -1675 268 275 69 8 chr9 90329714 90329845 -51941599 + L1ME LINE L1 5680 5818 -303 2051 133 0 10 chr9 90329857 90330166 -51941278 + AluSx SINE Alu 1 306 -6 889 267 54 41 chr9 90330167 90330461 -51940983 + L1ME LINE L1 4879 5168 -996 2178 141 0 0 chr9 90330461 90330765 -51940679 + AluSx SINE Alu 1 304 -8 889 267 54 41 chr9 90330765 90331171 -51940273 + L1ME LINE L1 5168 5592 -572 662 161 71 0 chr9 90331194 90331306 -51940138 - FLAM_C SINE Alu -23 120 1 255 61 0 0 chr9 90331385 90331418 -51940026 + (T)n Simple_repeat Simple_repeat 1 33 0 4244 220 44 37 chr9 90331601 90331868 -51939576 + L1 LINE L1 3884 4148 -1998 192 40 0 0 chr9 90331868 90331893 -51939551 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2409 88 0 0 chr9 90331893 90332188 -51939256 + AluSx SINE Alu 1 295 -17 4244 220 44 37 chr9 90332188 90333014 -51938430 + L1 LINE L1 4148 4966 -1180 2074 113 0 71 chr9 90333014 90333340 -51938104 + AluSx SINE Alu 3 305 -7 4244 220 44 37 chr9 90333340 90333430 -51938014 + L1 LINE L1 4966 5081 -1065 2294 115 0 0 chr9 90333430 90333725 -51937719 - AluSc SINE Alu -14 295 1 4244 220 44 37 chr9 90333725 90333783 -51937661 + L1 LINE L1 5081 5137 -1009 * 6186 136 31 34 chr9 90333777 90334201 -51937243 + L1MA5A LINE L1 4133 4556 -1741 2441 91 3 0 chr9 90334201 90334510 -51936934 + AluSx SINE Alu 2 311 -1 6186 136 31 34 chr9 90334510 90336241 -51935203 + L1MA5A LINE L1 4556 6291 -6 283 260 42 0 chr9 90336245 90336341 -51935103 + L1 LINE L1 5122 5221 -925 267 206 0 0 chr9 90336317 90336385 -51935059 + L1MDa LINE L1 1604 1671 -4869 * 276 176 0 43 chr9 90336366 90336452 -51934992 + L1MDa LINE L1 2588 2650 -3890 766 183 41 0 chr9 90336456 90336625 -51934819 + L1MC3 LINE L1 6829 7004 -781 * 3189 130 16 64 chr9 90336623 90337058 -51934386 + L1P5 LINE L1 5042 5428 -728 2207 101 0 16 chr9 90337058 90337376 -51934068 + AluSp SINE Alu 1 313 0 3189 130 16 64 chr9 90337376 90337746 -51933698 + L1P5 LINE L1 5428 5814 -342 2694 131 21 63 chr9 90337746 90338267 -51933177 - LTR14 LTR ERVK 0 548 50 559 125 0 0 chr9 90338367 90338447 -51932997 + AluSq SINE Alu 89 168 -145 2576 181 20 29 chr9 90338448 90338999 -51932445 + L1PA16 LINE L1 5621 6166 0 2241 98 0 0 chr9 90339162 90339457 -51931987 - AluSc SINE Alu -14 295 1 21 0 0 0 chr9 90339817 90339838 -51931606 + AT_rich Low_complexity Low_complexity 1 21 0 226 317 73 54 chr9 90340271 90340600 -51930844 + L2 LINE L2 2744 3106 -166 1020 224 235 18 chr9 90341423 90341869 -51929575 - L1MC4 LINE L1 -681 7361 6819 345 233 49 20 chr9 90342429 90342614 -51928830 - HSAT5 Satellite Satellite 0 190 1 276 233 13 37 chr9 90342813 90342975 -51928469 - HSAT5 Satellite Satellite 0 158 1 218 236 0 18 chr9 90343383 90343438 -51928006 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1316 153 31 49 chr9 90343681 90344007 -51927437 - SN5 Other centromeric -18 437 118 1482 168 40 69 chr9 90344029 90344405 -51927039 + MST-int LTR MaLR 1287 1651 0 273 204 78 68 chr9 90344405 90344508 -51926936 + MSTA LTR MaLR 1 104 -324 317 262 0 0 chr9 90344577 90344638 -51926806 + MSTA LTR MaLR 95 155 -273 1495 221 3 32 chr9 90344645 90344989 -51926455 + MSTA-int LTR MaLR 1318 1651 0 412 208 10 0 chr9 90344989 90345085 -51926359 + MSTA LTR MaLR 1 97 -331 271 214 18 0 chr9 90345174 90345230 -51926214 + MSTA-int LTR MaLR 911 967 -613 * 800 185 284 0 chr9 90345218 90345440 -51926004 - THE1-int LTR MaLR -389 1191 907 927 212 97 31 chr9 90345444 90345703 -51925741 + MSTA LTR MaLR 76 351 -77 488 219 183 7 chr9 90345742 90345879 -51925565 - MST-int LTR MaLR -984 667 507 * 6260 228 50 29 chr9 90345877 90347468 -51923976 + MSTA-int LTR MaLR 28 1651 0 373 248 80 9 chr9 90347561 90347674 -51923770 + MSTA LTR MaLR 58 178 -250 1473 193 0 53 chr9 90347674 90348016 -51923428 + MSTA-int LTR MaLR 1328 1651 0 467 181 32 0 chr9 90348016 90348110 -51923334 + MSTA LTR MaLR 1 97 -331 249 250 18 0 chr9 90348202 90348258 -51923186 + THE1-int LTR MaLR 910 966 -614 756 226 174 22 chr9 90348260 90348490 -51922954 - MST-int LTR MaLR -411 1240 976 608 263 81 10 chr9 90348495 90348693 -51922751 + MSTA LTR MaLR 76 287 -141 343 174 19 26 chr9 90348677 90348769 -51922675 - HSAT5 Satellite Satellite -1 91 1 * 240 238 48 36 chr9 90348886 90348970 -51922474 - HSAT5 Satellite Satellite -1 85 1 360 235 0 12 chr9 90349031 90349130 -51922314 - HSAT5 Satellite Satellite -3 97 1 418 151 0 67 chr9 90349349 90349450 -51921994 - HSAT5 Satellite Satellite 0 94 1 1714 117 12 4 chr9 90355995 90356251 -51915193 + AluSq SINE Alu 6 263 -50 189 74 0 0 chr9 90356272 90356299 -51915145 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 194 0 0 chr9 90357375 90357411 -51914033 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr9 90357420 90357446 -51913998 + AT_rich Low_complexity Low_complexity 1 26 0 2272 65 0 19 chr9 90357844 90358153 -51913291 - AluY SINE Alu -4 307 5 324 50 0 0 chr9 90358237 90358277 -51913167 - L1PA10 LINE L1 -11 6157 6118 2138 98 0 0 chr9 90358277 90358573 -51912871 - AluY SINE Alu -15 296 1 500 84 24 12 chr9 90358573 90358656 -51912788 - LTR56 LTR ERV1 -361 84 1 601 260 50 65 chr9 90358660 90358983 -51912461 - L1M4 LINE L1 -775 5371 5054 1277 205 94 41 chr9 90359044 90359385 -51912059 + MER31A LTR ERV1 127 485 0 866 238 97 0 chr9 90359393 90359641 -51911803 + L1M4 LINE L1 4680 4951 -1195 1766 111 11 4 chr9 90359683 90359944 -51911500 + AluSq SINE Alu 1 263 -50 189 74 0 0 chr9 90359965 90359992 -51911452 + (CA)n Simple_repeat Simple_repeat 2 28 0 2275 65 0 19 chr9 90361334 90361643 -51909801 - AluY SINE Alu -4 307 5 324 50 0 0 chr9 90361727 90361767 -51909677 - L1PA10 LINE L1 -11 6157 6118 2127 98 0 0 chr9 90361767 90362063 -51909381 - AluY SINE Alu -15 296 1 485 96 24 12 chr9 90362063 90362146 -51909298 - LTR56 LTR ERV1 -361 84 1 1455 246 100 37 chr9 90362150 90362510 -51908934 - L1M4 LINE L1 -775 5371 5035 2376 47 0 7 chr9 90362510 90362808 -51908636 - AluY SINE Alu -15 296 1 1455 246 100 37 chr9 90362808 90363098 -51908346 - L1M4 LINE L1 -1111 5035 4680 1489 213 68 66 chr9 90363106 90363590 -51907854 - MER31A LTR ERV1 0 485 1 2612 236 91 28 chr9 90363591 90364651 -51906793 - L1M4 LINE L1 -2007 4139 3014 1588 232 57 2 chr9 90364662 90365192 -51906252 - L1M4 LINE L1 -2974 3172 2614 369 284 69 47 chr9 90365807 90366039 -51905405 + L2 LINE L2 2450 2690 -624 1763 163 0 3 chr9 90366039 90366339 -51905105 - AluJo SINE Alu -13 299 1 369 284 69 47 chr9 90366339 90366381 -51905063 + L2 LINE L2 2690 2730 -584 286 256 70 101 chr9 90368300 90368429 -51903015 + MIR SINE MIR 28 152 -56 1050 116 6 11 chr9 90368583 90368764 -51902680 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2146 122 0 0 chr9 90368767 90369079 -51902365 - AluSx SINE Alu 0 312 1 28 0 0 0 chr9 90370208 90370236 -51901208 + AT_rich Low_complexity Low_complexity 1 28 0 1638 254 54 26 chr9 90370238 90370738 -51900706 - L1ME1 LINE L1 -35 6131 5618 765 261 15 15 chr9 90370843 90371042 -51900402 - L1ME LINE L1 -514 5652 5454 967 178 0 0 chr9 90371078 90371235 -51900209 + FRAM SINE Alu 1 151 -25 803 262 18 39 chr9 90371247 90371529 -51899915 - L1ME1 LINE L1 -4 6162 5887 2482 62 0 0 chr9 90371608 90371917 -51899527 - AluY SINE Alu -2 309 1 1999 133 0 0 chr9 90371999 90372285 -51899159 - AluSx SINE Alu -26 286 1 1292 238 213 39 chr9 90372558 90373414 -51898030 - HAL1 LINE L1 -703 1804 800 249 284 15 0 chr9 90373449 90373516 -51897928 - AluJ/FLAM SINE Alu -234 68 1 265 248 26 18 chr9 90375856 90375875 -51895569 - L1MA4A LINE L1 -1 6302 6284 4810 166 12 13 chr9 90375875 90376345 -51895099 - L1PB4 LINE L1 -3 6153 5683 2326 72 0 7 chr9 90376345 90376650 -51894794 - AluY SINE Alu -8 303 1 4810 166 12 13 chr9 90376650 90377097 -51894347 - L1PB4 LINE L1 -473 5683 5237 439 280 0 8 chr9 90379509 90379627 -51891817 + MIR SINE MIR 23 139 -123 198 83 28 56 chr9 90379764 90379800 -51891644 - MER5B DNA MER1_type -143 35 1 261 295 134 18 chr9 90379889 90380001 -51891443 - L2 LINE L2 0 3313 3189 1891 236 48 34 chr9 90380119 90380772 -51890672 + L1MC2 LINE L1 4142 4803 -1343 1961 184 37 36 chr9 90380775 90381082 -51890362 + L1MC2 LINE L1 4877 5182 -1162 2317 89 0 0 chr9 90381082 90381384 -51890060 + AluSc SINE Alu 1 302 -7 1961 184 37 36 chr9 90381384 90381639 -51889805 + L1MC2 LINE L1 5182 5435 -909 2293 159 46 22 chr9 90381639 90382055 -51889389 + MSTB LTR MaLR 1 426 0 1961 184 37 36 chr9 90382055 90382783 -51888661 + L1MC2 LINE L1 5435 6334 -10 246 298 83 0 chr9 90383197 90383281 -51888163 + MIR3 SINE MIR 117 207 -1 947 227 30 10 chr9 90383401 90383599 -51887845 - MER58A DNA MER1_type 0 224 23 395 202 11 0 chr9 90383638 90383732 -51887712 + GA-rich Low_complexity Low_complexity 3 97 0 207 288 31 110 chr9 90383785 90383933 -51887511 - L2 LINE L2 -14 3258 3116 2937 203 33 32 chr9 90384381 90384574 -51886870 - L1MD2 LINE L1 -353 6266 6075 2372 103 0 3 chr9 90384574 90384885 -51886559 - AluSg SINE Alu 0 310 1 2937 203 33 32 chr9 90384885 90385380 -51886064 - L1MD2 LINE L1 -544 6075 5577 1576 171 43 23 chr9 90385384 90385819 -51885625 - AluJb SINE Alu 0 441 1 1715 229 37 35 chr9 90385842 90386171 -51885273 - L1MD2 LINE L1 -953 5453 5126 3878 36 0 7 chr9 90386171 90386616 -51884828 + L1PA4 LINE L1 5714 6155 0 1715 229 37 35 chr9 90386616 90386767 -51884677 - L1MD2 LINE L1 -1280 5126 4969 705 189 39 8 chr9 90386767 90386894 -51884550 - FLAM_A SINE Alu -2 131 1 1715 229 37 35 chr9 90386894 90386981 -51884463 - L1MD2 LINE L1 -1437 4969 4884 773 96 0 0 chr9 90387010 90387104 -51884340 + AluS SINE Alu 2 95 -217 2168 122 3 3 chr9 90387131 90387443 -51884001 + AluSx SINE Alu 1 312 0 4795 243 35 60 chr9 90387478 90389367 -51882077 - L1MD2 LINE L1 -1526 4880 3040 4634 214 88 34 chr9 90389362 90389825 -51881619 - L1MD2 LINE L1 -3609 2797 2361 * 1944 130 7 17 chr9 90389825 90390125 -51881319 - AluSx SINE Alu -15 297 1 4634 214 88 34 chr9 90390125 90390911 -51880533 - L1MD2 LINE L1 -4045 2361 1620 2230 121 3 3 chr9 90390911 90391217 -51880227 - AluSx SINE Alu -6 306 1 4634 214 88 34 chr9 90391217 90391830 -51879614 - L1MD2 LINE L1 -4786 1620 822 2386 103 3 0 chr9 90391850 90392160 -51879284 - AluSp SINE Alu -2 311 1 265 232 0 0 chr9 90392160 90392216 -51879228 - L1MD2 LINE L1 -5573 836 781 327 302 24 48 chr9 90392424 90392550 -51878894 - L1MD2 LINE L1 -6091 318 196 908 280 47 13 chr9 90393590 90393908 -51877536 + LTR40c LTR ERVL 1 329 -136 277 211 120 115 chr9 90394447 90394656 -51876788 - MLT1J1 LTR MaLR -234 212 3 561 287 21 36 chr9 90394666 90394945 -51876499 - HAL1b LINE L1 -922 426 152 1529 174 0 51 chr9 90395046 90395339 -51876105 - AluJo SINE Alu -18 294 17 592 262 116 21 chr9 90395358 90395430 -51876014 - MER112 DNA MER1_type -5 255 191 2287 232 49 46 chr9 90395430 90396021 -51875423 - MLT1E LTR MaLR 0 593 1 592 262 116 21 chr9 90396021 90396126 -51875318 - MER112 DNA MER1_type -69 191 97 270 0 0 0 chr9 90396126 90396156 -51875288 + (TG)n Simple_repeat Simple_repeat 1 30 0 592 262 116 21 chr9 90396156 90396210 -51875234 - MER112 DNA MER1_type -163 97 1 1984 139 0 3 chr9 90397178 90397465 -51873979 - AluJo SINE Alu -10 302 17 368 67 17 0 chr9 90398072 90398132 -51873312 + (TA)n Simple_repeat Simple_repeat 1 61 0 2282 101 0 0 chr9 90398134 90398421 -51873023 - AluSq SINE Alu -26 287 1 2215 98 7 7 chr9 90399910 90400216 -51871228 + AluSq SINE Alu 1 306 -7 2084 119 40 45 chr9 90400216 90400510 -51870934 + L1MB2 LINE L1 5827 6122 -49 2013 110 57 0 chr9 90400510 90400791 -51870653 + AluSx SINE Alu 1 297 -15 2084 119 40 45 chr9 90400791 90400840 -51870604 + L1MB2 LINE L1 6122 6170 -1 1816 158 31 0 chr9 90400944 90401236 -51870208 + AluSx SINE Alu 1 301 -11 519 313 120 8 chr9 90401414 90402012 -51869432 + L1MC5 LINE L1 3527 4191 -1955 536 294 150 11 chr9 90402465 90402812 -51868632 + L1MC5 LINE L1 5409 5803 -2005 21 0 0 0 chr9 90403288 90403309 -51868135 + AT_rich Low_complexity Low_complexity 1 21 0 1899 119 65 4 chr9 90403519 90403797 -51867647 - AluSx SINE Alu -17 295 1 1049 203 100 138 chr9 90403913 90404515 -51866929 + L1MC5 LINE L1 6652 7220 -741 1970 159 7 0 chr9 90404515 90404817 -51866627 + AluJo SINE Alu 1 304 -8 1049 203 100 138 chr9 90404817 90404977 -51866467 + L1MC5 LINE L1 7220 7385 -576 2223 118 3 0 chr9 90405210 90405515 -51865929 + AluSx SINE Alu 1 306 -6 195 42 0 0 chr9 90405580 90405604 -51865840 + (TG)n Simple_repeat Simple_repeat 2 25 0 772 284 38 4 chr9 90405841 90406080 -51865364 - MIR SINE MIR -3 259 13 974 277 102 34 chr9 90406603 90406691 -51864753 + Charlie7 DNA MER1_type 1637 1718 -894 2388 87 0 0 chr9 90406691 90407000 -51864444 + AluY SINE Alu 1 309 -2 974 277 102 34 chr9 90407000 90407692 -51863752 + Charlie7 DNA MER1_type 1718 2545 -67 255 31 0 0 chr9 90407934 90407966 -51863478 + (CA)n Simple_repeat Simple_repeat 1 32 0 380 272 80 25 chr9 90408344 90408506 -51862938 - MER5B DNA MER1_type -3 175 5 280 159 0 0 chr9 90409161 90409205 -51862239 - MER5A DNA MER1_type -144 45 2 224 325 141 38 chr9 90409205 90409302 -51862142 - L2 LINE L2 -680 2634 2548 2418 197 64 32 chr9 90409302 90409341 -51862103 - MLT2B1 LTR ERVL -1 519 483 243 0 0 0 chr9 90409341 90409368 -51862076 + (TG)n Simple_repeat Simple_repeat 2 28 0 2418 197 64 32 chr9 90409368 90409831 -51861613 - MLT2B1 LTR ERVL -37 483 1 224 325 141 38 chr9 90409831 90410266 -51861178 - L2 LINE L2 -766 2548 2047 701 264 23 63 chr9 90410559 90410793 -51860651 - MER41E LTR ERV1 0 512 290 2254 54 7 4 chr9 90410793 90411211 -51860233 - AluY SINE Alu 0 419 1 701 264 23 63 chr9 90411211 90411274 -51860170 - MER41E LTR ERV1 -222 290 226 207 142 39 77 chr9 90411886 90412041 -51859403 + (GTGTG)n Simple_repeat Simple_repeat 5 153 0 822 189 47 0 chr9 90412257 90412426 -51859018 + MER82 DNA MER2_type 28 204 -449 2250 77 21 0 chr9 90412565 90412850 -51858594 - AluSg SINE Alu -19 291 1 1041 211 0 5 chr9 90413019 90413204 -51858240 + MER82 DNA MER2_type 198 381 -272 31 0 0 0 chr9 90414408 90414439 -51857005 + AT_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr9 90414645 90414669 -51856775 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2333 83 3 10 chr9 90414675 90414975 -51856469 + AluSp SINE Alu 3 300 -13 1124 241 34 0 chr9 90415322 90415588 -51855856 + MER82 DNA MER2_type 370 644 -9 279 259 37 19 chr9 90415592 90415700 -51855744 + HAL1 LINE L1 1684 1793 -714 534 305 113 49 chr9 90415706 90415850 -51855594 + HAL1 LINE L1 1897 2030 -477 2289 112 3 6 chr9 90415850 90416164 -51855280 + AluSp SINE Alu 1 313 0 534 305 113 49 chr9 90416164 90416593 -51854851 + HAL1 LINE L1 2030 2507 0 2256 104 10 7 chr9 90417340 90417638 -51853806 - AluSx SINE Alu -13 299 1 876 193 63 136 chr9 90417650 90417981 -51853463 - MER51A LTR ERV1 0 634 328 305 213 61 30 chr9 90418205 90418370 -51853074 + L1MEd LINE L1 953 1150 -4969 333 293 82 35 chr9 90418370 90418602 -51852842 + L1M4 LINE L1 5060 5302 -844 714 201 122 22 chr9 90418628 90418857 -51852587 - LTR52 LTR ERVL -169 252 1 412 223 41 41 chr9 90419724 90419845 -51851599 + MLT1H LTR MaLR 377 497 -52 2299 115 0 3 chr9 90419867 90420181 -51851263 - AluSq SINE Alu 0 313 1 737 99 0 0 chr9 90420221 90420312 -51851132 + AluSg/x SINE Alu 188 278 -34 521 95 24 0 chr9 90420317 90420401 -51851043 + (GGGGA)n Simple_repeat Simple_repeat 5 90 0 2410 87 3 0 chr9 90421420 90421729 -51849715 - AluSg SINE Alu 0 310 1 3294 259 43 9 chr9 90423000 90423957 -51847487 - L1MEc LINE L1 -5215 1181 193 1438 192 78 97 chr9 90423957 90424437 -51847007 - MER66A LTR ERV1 0 504 97 307 202 219 17 chr9 90424503 90424622 -51846822 - L1MEc LINE L1 -6208 188 46 22 56 0 0 chr9 90425060 90425096 -51846348 + AT_rich Low_complexity Low_complexity 1 36 0 633 206 188 6 chr9 90425603 90425763 -51845681 - MER5A DNA MER1_type 0 189 1 2095 118 27 0 chr9 90426045 90426342 -51845102 + AluSx SINE Alu 4 308 -4 197 188 0 0 chr9 90426721 90426753 -51844691 + MIR SINE MIR 202 233 -29 382 203 17 124 chr9 90427187 90427259 -51844185 - LTR48 LTR ERV1 -28 759 681 2369 103 3 0 chr9 90427259 90427569 -51843875 + AluSx SINE Alu 1 311 -1 382 203 17 124 chr9 90427569 90427630 -51843814 - LTR48 LTR ERV1 -106 681 647 2268 120 0 0 chr9 90427630 90427938 -51843506 + AluSq SINE Alu 1 308 -5 382 203 17 124 chr9 90427938 90427980 -51843464 - LTR48 LTR ERV1 -140 647 602 * 2373 128 71 10 chr9 90427965 90428371 -51843073 - LTR49 LTR ERV1 -164 431 1 1058 115 19 96 chr9 90428664 90428873 -51842571 - LTR29 LTR ERV1 0 622 430 3010 143 64 2 chr9 90428936 90429417 -51842027 + MER41E LTR ERV1 2 512 0 1234 116 24 2 chr9 90429417 90429662 -51841782 - LTR29 LTR ERV1 -174 448 158 660 102 0 0 chr9 90430025 90430123 -51841321 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 1077 231 111 56 chr9 90430167 90430752 -51840692 - L1MC5 LINE L1 -45 7916 7300 3191 131 20 2 chr9 90431122 90431581 -51839863 - LTR24 LTR ERV1 0 467 1 28 0 0 0 chr9 90431646 90431674 -51839770 + AT_rich Low_complexity Low_complexity 1 28 0 1852 116 0 15 chr9 90432634 90432893 -51838551 + AluSq SINE Alu 45 299 -14 321 265 41 20 chr9 90432956 90433054 -51838390 + L1MEd LINE L1 993 1092 -5027 1356 91 17 109 chr9 90433072 90433302 -51838142 + AluSc SINE Alu 91 299 -10 444 280 42 111 chr9 90433303 90433347 -51838097 + HAL1 LINE L1 1238 1283 -1224 1571 103 222 4 chr9 90433347 90433590 -51837854 + AluSg1 SINE Alu 1 296 -13 444 280 42 111 chr9 90433590 90433672 -51837772 + HAL1 LINE L1 1283 1369 -1138 2408 76 3 7 chr9 90433672 90433976 -51837468 + AluY SINE Alu 1 303 -8 444 280 42 111 chr9 90433976 90434227 -51837217 + HAL1 LINE L1 1369 1590 -917 1058 169 25 40 chr9 90434227 90434428 -51837016 + AluJo SINE Alu 1 198 -114 260 134 0 0 chr9 90434429 90434476 -51836968 + Alu SINE Alu 240 280 -22 411 223 41 41 chr9 90434720 90434841 -51836603 + MLT1H LTR MaLR 377 497 -52 2318 115 0 3 chr9 90434863 90435177 -51836267 - AluSq SINE Alu 0 313 1 692 118 39 0 chr9 90435217 90435319 -51836125 + AluSg/x SINE Alu 188 293 -19 509 77 26 0 chr9 90435319 90435397 -51836047 + (GGGGA)n Simple_repeat Simple_repeat 1 80 0 2427 87 3 0 chr9 90436416 90436725 -51834719 - AluSg SINE Alu 0 310 1 3259 259 43 9 chr9 90437996 90438953 -51832491 - L1MEc LINE L1 -5215 1181 193 1516 186 79 95 chr9 90438953 90439426 -51832018 - MER66A LTR ERV1 0 504 97 297 202 219 17 chr9 90439498 90439617 -51831827 - L1MEc LINE L1 -6208 188 46 30 27 0 0 chr9 90440055 90440092 -51831352 + AT_rich Low_complexity Low_complexity 1 37 0 577 210 185 6 chr9 90440600 90440757 -51830687 - MER5A DNA MER1_type 0 189 5 2131 114 27 0 chr9 90441042 90441339 -51830105 + AluSx SINE Alu 4 308 -4 186 188 0 0 chr9 90441719 90441751 -51829693 + MIR SINE MIR 202 233 -29 370 203 17 124 chr9 90442185 90442257 -51829187 - LTR48 LTR ERV1 -28 759 681 2416 100 3 0 chr9 90442257 90442568 -51828876 + AluSx SINE Alu 1 312 0 370 203 17 124 chr9 90442568 90442629 -51828815 - LTR48 LTR ERV1 -106 681 647 2282 120 0 0 chr9 90442629 90442937 -51828507 + AluSq SINE Alu 1 308 -5 370 203 17 124 chr9 90442937 90442979 -51828465 - LTR48 LTR ERV1 -140 647 602 * 2360 131 71 10 chr9 90442964 90443370 -51828074 - LTR49 LTR ERV1 -164 431 1 1101 111 19 91 chr9 90443663 90443871 -51827573 - LTR29 LTR ERV1 0 622 430 2870 140 9 2 chr9 90443934 90444369 -51827075 + MER41E LTR ERV1 2 439 -73 1228 116 24 2 chr9 90444415 90444660 -51826784 - LTR29 LTR ERV1 -174 448 158 552 116 0 0 chr9 90445023 90445109 -51826335 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1033 231 111 56 chr9 90445153 90445738 -51825706 - L1MC5 LINE L1 -45 7916 7300 3032 133 20 2 chr9 90446108 90446567 -51824877 - LTR24 LTR ERV1 0 467 1 28 0 0 0 chr9 90446632 90446660 -51824784 + AT_rich Low_complexity Low_complexity 1 28 0 1965 107 0 15 chr9 90447617 90447889 -51823555 + AluSx SINE Alu 45 312 0 32 0 0 0 chr9 90448659 90448691 -51822753 + AT_rich Low_complexity Low_complexity 1 32 0 2642 50 0 0 chr9 90448696 90448995 -51822449 + AluY SINE Alu 1 299 -12 1744 159 36 4 chr9 90450219 90450496 -51820948 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr9 90450498 90450523 -51820921 + AT_rich Low_complexity Low_complexity 1 25 0 2488 57 0 0 chr9 90450581 90450879 -51820565 + AluY SINE Alu 1 298 -13 438 263 192 45 chr9 90451287 90451599 -51819845 + HAL1 LINE L1 1409 1766 -741 2258 122 0 3 chr9 90451730 90452041 -51819403 + AluSg SINE Alu 1 310 0 2267 107 3 0 chr9 90452097 90452396 -51819048 + AluSq SINE Alu 1 300 -13 373 341 51 29 chr9 90452585 90452960 -51818484 - L2 LINE L2 -56 3257 2875 246 254 65 94 chr9 90452987 90453125 -51818319 + L1ME LINE L1 4883 5016 -1130 387 250 0 0 chr9 90453127 90453203 -51818241 + HAL1 LINE L1 1 76 -2431 1882 196 75 27 chr9 90453205 90453643 -51817801 - LTR2B LTR ERV1 0 490 32 599 261 102 25 chr9 90453661 90453906 -51817538 + HAL1 LINE L1 79 342 -2165 2377 68 0 7 chr9 90453919 90454211 -51817233 - AluY SINE Alu -20 291 2 2329 112 3 9 chr9 90454254 90454592 -51816852 - MER9 LTR ERVK 0 511 176 2324 79 0 47 chr9 90454592 90454909 -51816535 + AluY SINE Alu 1 302 -9 327 271 57 51 chr9 90454978 90455123 -51816321 + HAL1 LINE L1 821 969 -1538 2303 102 0 29 chr9 90455123 90455437 -51816007 + AluSg SINE Alu 1 305 -5 327 271 57 51 chr9 90455437 90455468 -51815976 + HAL1 LINE L1 969 998 -1509 1320 238 85 15 chr9 90455546 90456175 -51815269 + L1ME LINE L1 5129 5823 -347 1017 163 12 0 chr9 90456180 90456340 -51815104 - MSTD LTR MaLR 0 396 235 440 238 16 0 chr9 90456386 90456508 -51814936 - L1M4 LINE L1 -843 5303 5180 7509 36 1 0 chr9 90456509 90458184 -51813260 - L1PA5 LINE L1 -4 6150 4467 6156 37 0 0 chr9 90458184 90458911 -51812533 + L1PA5 LINE L1 3727 4453 -1693 2303 253 82 13 chr9 90459083 90459908 -51811536 + HAL1 LINE L1 1190 2071 -436 461 289 75 12 chr9 90459915 90460088 -51811356 + MIR SINE MIR 5 188 -74 1207 184 0 13 chr9 90460141 90460369 -51811075 - AluJo SINE Alu -2 310 86 422 298 74 37 chr9 90460413 90460765 -51810679 + HAL1 LINE L1 2089 2453 -54 1477 253 42 0 chr9 90460820 90461227 -51810217 + L1M4 LINE L1 3510 3933 -2213 2498 205 23 53 chr9 90461244 90461695 -51809749 - L1MA9 LINE L1 -48 6264 5801 1697 169 0 49 chr9 90461695 90462020 -51809424 - AluJo SINE Alu -3 309 1 2480 81 0 3 chr9 90462029 90462337 -51809107 - AluY SINE Alu -4 307 1 2498 205 23 53 chr9 90462337 90462537 -51808907 - L1MA9 LINE L1 -519 5793 5623 689 234 73 44 chr9 90462540 90462788 -51808656 + L1M4 LINE L1 3919 4173 -1973 436 197 136 76 chr9 90462818 90462950 -51808494 + MER82 DNA MER2_type 23 162 -491 1173 152 15 20 chr9 90463408 90463612 -51807832 + MER82 DNA MER2_type 200 402 -251 372 267 29 0 chr9 90464688 90464793 -51806651 - MLT1H LTR MaLR -362 187 80 2455 49 0 61 chr9 90464836 90465164 -51806280 - AluY SINE Alu -3 308 1 226 164 119 45 chr9 90465866 90465933 -51805511 - LTR9 LTR ERV1 -83 529 458 1904 104 85 0 chr9 90465962 90466232 -51805212 - AluY SINE Alu -18 293 1 254 322 101 49 chr9 90466562 90467009 -51804435 - L1MC/D LINE L1 -1909 5899 5430 191 190 38 13 chr9 90467194 90467273 -51804171 + (TA)n Simple_repeat Simple_repeat 2 82 0 711 99 0 0 chr9 90467649 90467750 -51803694 - AluSc SINE Alu -9 300 200 1997 179 91 35 chr9 90467753 90468217 -51803227 + LTR2B LTR ERV1 1 490 0 1663 81 0 0 chr9 90468217 90468414 -51803030 - AluSc SINE Alu -102 207 11 562 124 7 139 chr9 90469604 90469697 -51801747 + MLT1B LTR MaLR 7 78 -312 2244 78 7 10 chr9 90469697 90469993 -51801451 + AluY SINE Alu 1 295 -16 562 124 7 139 chr9 90469993 90470036 -51801408 + MLT1B LTR MaLR 78 125 -265 823 188 0 0 chr9 90470037 90470170 -51801274 + AluSq/x SINE Alu 1 133 -179 2448 97 0 0 chr9 90470189 90470497 -51800947 + AluY SINE Alu 1 308 -3 1584 158 22 4 chr9 90470520 90470793 -51800651 + MLT1B LTR MaLR 112 389 -1 2011 93 61 7 chr9 90470999 90471277 -51800167 + AluSx SINE Alu 1 293 -19 258 288 100 52 chr9 90471286 90471693 -51799751 + L1ME LINE L1 5357 5781 -340 234 281 175 36 chr9 90472708 90473039 -51798405 + MLT1K LTR MaLR 183 559 -29 537 233 27 95 chr9 90473897 90473997 -51797447 + MER20B DNA MER1_type 540 645 -138 2198 122 0 28 chr9 90473997 90474316 -51797128 - AluSx SINE Alu -2 310 1 537 233 27 95 chr9 90474316 90474477 -51796967 + MER20B DNA MER1_type 645 783 0 2238 116 0 3 chr9 90474723 90475026 -51796418 + AluSx SINE Alu 1 302 -10 285 298 118 28 chr9 90475157 90475335 -51796109 + L2 LINE L2 3111 3304 -9 1039 119 0 0 chr9 90475348 90475482 -51795962 + AluSq/x SINE Alu 2 135 -178 1817 134 3 25 chr9 90475482 90475766 -51795678 + AluSx SINE Alu 1 278 -34 2357 175 22 0 chr9 90475869 90476269 -51795175 + MLT2C2 LTR ERVL 1 409 -55 272 120 20 0 chr9 90476270 90476320 -51795124 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 368 120 0 0 chr9 90476351 90476401 -51795043 - MLT2C2 LTR ERVL -211 253 204 312 230 46 11 chr9 90476403 90476490 -51794954 - L1MC4 LINE L1 -1339 6703 6614 228 182 23 0 chr9 90476569 90476613 -51794831 + MLT2C2 LTR ERVL 476 520 0 286 199 118 23 chr9 90476703 90476829 -51794615 - MIR SINE MIR -67 141 7 197 300 25 0 chr9 90477054 90477134 -51794310 - MIR SINE MIR -36 226 145 240 209 0 0 chr9 90477998 90478089 -51793355 + GA-rich Low_complexity Low_complexity 2 92 0 276 291 20 26 chr9 90478109 90478260 -51793184 - L1M LINE L1 -748 5414 5265 255 292 0 0 chr9 90478467 90478556 -51792888 - L1 LINE L1 -1112 5034 4946 24 67 0 0 chr9 90478717 90478762 -51792682 + AT_rich Low_complexity Low_complexity 1 45 0 829 280 0 0 chr9 90478972 90479190 -51792254 + MIR SINE MIR 14 231 -31 2369 184 24 5 chr9 90480476 90480894 -51790550 + MSTB LTR MaLR 1 426 0 1363 238 47 79 chr9 90480929 90481395 -51790049 - MLT1F LTR MaLR -89 453 3 2136 103 10 3 chr9 90482040 90482351 -51789093 + AluSq SINE Alu 1 313 0 21 0 0 0 chr9 90482628 90482649 -51788795 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 90484017 90484039 -51787405 + AT_rich Low_complexity Low_complexity 1 22 0 375 228 149 26 chr9 90484141 90484255 -51787189 - L2 LINE L2 -1 3312 3185 442 283 27 53 chr9 90484332 90484519 -51786925 - HsTC2 DNA Tc2 -1048 850 669 2249 87 0 3 chr9 90484579 90484879 -51786565 + AluSg SINE Alu 1 299 -11 1300 251 98 27 chr9 90486750 90487125 -51784319 + Charlie4a DNA MER1_type 1 348 -1613 342 0 0 0 chr9 90487125 90487163 -51784281 + (TG)n Simple_repeat Simple_repeat 1 38 0 2350 62 0 29 chr9 90487164 90487471 -51783973 - AluY SINE Alu -13 298 1 1300 251 98 27 chr9 90487471 90487532 -51783912 + Charlie4a DNA MER1_type 347 470 -38 274 300 186 13 chr9 90487604 90487841 -51783603 + LTR16C LTR ERVL 179 456 -35 2107 114 7 0 chr9 90488393 90488700 -51782744 + AluSx SINE Alu 1 309 -3 1763 76 0 0 chr9 90488814 90489038 -51782406 - AluY SINE Alu -87 224 1 511 93 53 0 chr9 90489245 90489320 -51782124 - AluY SINE Alu -230 80 2 477 241 140 12 chr9 90489601 90489842 -51781602 - MLT1H1 LTR MaLR -20 510 231 1498 273 29 8 chr9 90489843 90490330 -51781114 + L1MD2 LINE L1 4450 4946 -1200 353 125 54 27 chr9 90490330 90490442 -51781002 + GA-rich Low_complexity Low_complexity 1 115 0 4404 200 38 18 chr9 90490456 90491692 -51779752 + L1MD2 LINE L1 4942 6209 -150 1352 245 70 50 chr9 90491864 90491947 -51779497 + MER21B LTR ERV1 12 92 -771 1939 127 10 7 chr9 90491947 90492247 -51779197 - AluJb SINE Alu -11 301 1 1352 245 70 50 chr9 90492247 90492579 -51778865 + MER21B LTR ERV1 92 435 -428 6823 57 9 33 chr9 90492598 90493570 -51777874 - SVA Other Other -5 1381 433 6015 63 21 17 chr9 90493634 90494497 -51776947 - SVA Other Other -520 866 1 274 0 130 0 chr9 90494497 90494543 -51776901 + GA-rich Low_complexity Low_complexity 5 56 0 1409 195 104 19 chr9 90494547 90494854 -51776590 + MER21B LTR ERV1 424 756 -107 702 278 11 0 chr9 90494972 90495148 -51776296 - MER5B DNA MER1_type 0 178 1 905 278 75 72 chr9 90495779 90495948 -51775496 + HAL1b LINE L1 83 250 -1098 1821 164 0 7 chr9 90495948 90496246 -51775198 + AluJb SINE Alu 2 297 -15 905 278 75 72 chr9 90496246 90496688 -51774756 + HAL1b LINE L1 250 696 -652 692 274 231 31 chr9 90496780 90497502 -51773942 - L2 LINE L2 -1290 2024 1076 1650 162 11 0 chr9 90497511 90497783 -51773661 + MLT1A2-int LTR MaLR 1461 1735 0 1614 185 34 57 chr9 90497783 90498166 -51773278 + MLT1A2 LTR MaLR 1 374 0 730 236 200 26 chr9 90498343 90498758 -51772686 - L2 LINE L2 -2509 805 319 781 186 87 0 chr9 90499048 90499209 -51772235 + FRAM SINE Alu 1 168 -8 1920 158 137 8 chr9 90499212 90499591 -51771853 + MSTA LTR MaLR 1 428 0 9125 139 16 54 chr9 90499593 90501233 -51770211 + MSTA-int LTR MaLR 3 1580 0 1903 149 171 11 chr9 90501233 90501415 -51770029 + MSTA LTR MaLR 1 153 -275 195 42 0 0 chr9 90501415 90501439 -51770005 + (TC)n Simple_repeat Simple_repeat 1 24 0 1903 149 171 11 chr9 90501439 90501625 -51769819 + MSTA LTR MaLR 153 428 0 253 184 41 0 chr9 90501955 90502004 -51769440 - MLT1B LTR MaLR -6 384 334 459 181 0 0 chr9 90502012 90502084 -51769360 + MER47A DNA MER2_type 1 72 -294 3285 138 12 14 chr9 90502177 90502690 -51768754 + MER41E LTR ERV1 1 512 0 1766 144 17 30 chr9 90502691 90502906 -51768538 + MER47A DNA MER2_type 72 283 -2040 2168 98 3 3 chr9 90502906 90503201 -51768243 - AluSx SINE Alu -17 295 1 1766 144 17 30 chr9 90503201 90503284 -51768160 + MER47A DNA MER2_type 283 366 0 2055 150 16 3 chr9 90503284 90503604 -51767840 - MLT1B LTR MaLR -66 324 1 283 254 36 73 chr9 90503951 90504061 -51767383 - MER112 DNA MER1_type -3 257 152 812 153 0 0 chr9 90504113 90504231 -51767213 + AluJb SINE Alu 1 118 -194 1684 158 6 35 chr9 90504358 90504669 -51766775 + AluJb SINE Alu 1 302 -10 1008 146 0 0 chr9 90504910 90505068 -51766376 + AluSg/x SINE Alu 139 296 -16 200 273 182 23 chr9 90505078 90505166 -51766278 - MIR SINE MIR -75 187 86 2150 84 0 72 chr9 90505989 90506322 -51765122 - AluSq SINE Alu -4 309 1 180 0 0 0 chr9 90507018 90507038 -51764406 + (A)n Simple_repeat Simple_repeat 1 20 0 2310 153 92 5 chr9 90507512 90507938 -51763506 - L1MC1 LINE L1 -2 6331 5869 927 154 35 6 chr9 90507987 90508156 -51763288 - MER45A DNA AcHobo 0 178 5 2444 68 0 0 chr9 90508173 90508484 -51762960 - AluY SINE Alu 0 311 1 1862 182 41 3 chr9 90509282 90509650 -51761794 - MLT1B LTR MaLR -1 389 8 198 0 0 0 chr9 90509883 90509905 -51761539 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2178 83 7 0 chr9 90509907 90510197 -51761247 - AluY SINE Alu -19 292 1 431 314 69 13 chr9 90510353 90510512 -51760932 + MIR SINE MIR 39 206 -56 2086 118 0 0 chr9 90510682 90510979 -51760465 + AluSp SINE Alu 1 297 -16 2342 162 67 2 chr9 90511028 90511461 -51759983 - LOR1b LTR ERV1 0 461 1 279 0 0 0 chr9 90511501 90511532 -51759912 + (TC)n Simple_repeat Simple_repeat 2 32 0 1718 154 0 11 chr9 90511532 90511812 -51759632 - AluJb SINE Alu -25 287 11 2023 65 0 29 chr9 90512379 90512656 -51758788 + AluSc SINE Alu 3 271 -38 291 71 0 0 chr9 90512666 90512708 -51758736 + (GGGGA)n Simple_repeat Simple_repeat 4 45 0 481 293 51 24 chr9 90512720 90512973 -51758471 - HAL1 LINE L1 -794 1713 1454 209 162 0 0 chr9 90513190 90513227 -51758217 + G-rich Low_complexity Low_complexity 3 39 0 1005 166 0 17 chr9 90513233 90513414 -51758030 + FRAM SINE Alu 1 173 -3 202 316 139 0 chr9 90513730 90513809 -51757635 + MIR SINE MIR 80 169 -93 482 265 215 15 chr9 90514213 90514281 -51757163 - MLT1G LTR MaLR -115 475 422 2418 55 0 16 chr9 90514281 90514589 -51756855 + AluY SINE Alu 1 303 -8 482 265 215 15 chr9 90514589 90514911 -51756533 - MLT1G LTR MaLR -168 422 1 2143 105 0 3 chr9 90514955 90515249 -51756195 - AluSc SINE Alu -13 296 4 324 273 58 36 chr9 90515256 90515395 -51756049 - L1 LINE L1 -1926 4220 4079 1828 199 48 97 chr9 90515461 90515705 -51755739 + MER89 LTR ERV1 1 255 -304 3012 177 19 33 chr9 90515705 90515895 -51755549 + L1MA7 LINE L1 5619 5810 -481 2418 57 0 3 chr9 90515895 90516192 -51755252 - AluY SINE Alu -15 296 1 3012 177 19 33 chr9 90516192 90516672 -51754772 + L1MA7 LINE L1 5810 6280 -11 1828 199 48 97 chr9 90516672 90517015 -51754429 + MER89 LTR ERV1 255 559 0 1342 212 13 10 chr9 90517217 90517524 -51753920 - AluJb SINE Alu -2 310 3 2686 134 40 7 chr9 90517842 90518288 -51753156 + LOR1b LTR ERV1 1 461 0 1070 208 86 7 chr9 90518484 90518753 -51752691 - MLT1C LTR MaLR -172 295 6 2446 46 0 3 chr9 90518787 90519093 -51752351 - AluY SINE Alu -6 305 1 1986 141 0 7 chr9 90519093 90519399 -51752045 - AluJb SINE Alu -8 304 1 479 179 13 0 chr9 90519430 90519508 -51751936 - MER94 DNA DNA -49 85 7 319 281 83 0 chr9 90519560 90519681 -51751763 + MLT1I LTR MaLR 72 202 -207 275 310 10 0 chr9 90519681 90519781 -51751663 + L1M4 LINE L1 3745 3845 -2301 1750 129 93 7 chr9 90519792 90520072 -51751372 + AluSx SINE Alu 1 304 -8 2357 70 0 3 chr9 90520483 90520785 -51750659 - AluY SINE Alu -10 301 1 1589 183 21 3 chr9 90520884 90521169 -51750275 + AluJo SINE Alu 2 291 -21 250 218 0 18 chr9 90521277 90521332 -51750112 + L1ME LINE L1 5530 5583 -538 247 158 61 0 chr9 90521387 90521469 -51749975 + (TA)n Simple_repeat Simple_repeat 2 88 0 628 257 60 70 chr9 90521582 90521952 -51749492 + LTR53 LTR ERVL 6 371 -148 468 250 55 43 chr9 90522022 90522186 -51749258 + LTR53 LTR ERVL 344 509 -10 1887 79 59 59 chr9 90522331 90522634 -51748810 - AluSg1 SINE Alu -6 303 1 208 341 112 28 chr9 90522672 90522851 -51748593 + L2 LINE L2 3119 3312 -1 272 270 0 14 chr9 90523267 90523341 -51748103 + Charlie4 DNA MER1_type 1883 1955 -6 1639 208 59 85 chr9 90523871 90524048 -51747396 - MER34B LTR ERV1 -2 563 383 2186 96 0 0 chr9 90524048 90524339 -51747105 - AluSc SINE Alu -18 291 1 1639 208 59 85 chr9 90524339 90524740 -51746704 - MER34B LTR ERV1 -182 383 2 269 244 126 25 chr9 90524740 90524859 -51746585 + L2 LINE L2 1826 1956 -1358 351 79 95 16 chr9 90525020 90525083 -51746361 + LTR52 LTR ERVL 31 98 -323 331 179 139 30 chr9 90525547 90525656 -51745788 + MER34 LTR ERV1 434 542 0 * 1091 174 85 36 chr9 90525656 90525925 -51745519 + LTR52 LTR ERVL 81 363 -58 230 259 0 0 chr9 90525985 90526039 -51745405 + L2 LINE L2 2155 2208 -1106 1889 126 7 3 chr9 90526175 90526468 -51744976 - AluSx SINE Alu -1 311 18 428 295 205 8 chr9 90526477 90526867 -51744577 + L2 LINE L2 2200 2666 -648 2130 91 3 0 chr9 90527585 90527882 -51743562 + AluY SINE Alu 14 311 0 32 57 0 0 chr9 90528012 90528065 -51743379 + AT_rich Low_complexity Low_complexity 1 53 0 675 299 95 58 chr9 90528211 90528688 -51742756 + L1ME4a LINE L1 5382 5908 -213 1875 119 6 50 chr9 90528883 90529201 -51742243 + AluSx SINE Alu 1 304 -8 696 206 0 8 chr9 90529360 90529486 -51741958 + FLAM_A SINE Alu 1 125 -8 219 88 0 0 chr9 90530630 90530664 -51740780 + (CA)n Simple_repeat Simple_repeat 2 35 0 334 216 136 56 chr9 90530702 90530827 -51740617 + L1ME4a LINE L1 5984 6118 -3 2178 96 3 0 chr9 90530849 90531142 -51740302 + AluSp SINE Alu 6 299 -14 2380 73 0 0 chr9 90531143 90531444 -51740000 + AluY SINE Alu 1 301 -10 30 27 0 0 chr9 90531646 90531683 -51739761 + AT_rich Low_complexity Low_complexity 1 37 0 314 280 188 88 chr9 90532321 90532434 -51739010 + HAL1 LINE L1 10 110 -2397 180 77 0 0 chr9 90532434 90532460 -51738984 + (CAA)n Simple_repeat Simple_repeat 2 27 0 314 280 188 88 chr9 90532460 90532918 -51738526 + HAL1 LINE L1 110 648 -1859 2070 121 0 34 chr9 90532918 90533240 -51738204 - AluSx SINE Alu -1 311 1 314 280 188 88 chr9 90533240 90533278 -51738166 + HAL1 LINE L1 648 681 -1826 1521 99 29 16 chr9 90533388 90533630 -51737814 - AluSg SINE Alu -26 284 40 1522 164 7 11 chr9 90534486 90534760 -51736684 + AluJo SINE Alu 38 310 -2 1177 236 157 15 chr9 90535215 90535673 -51735771 + MER34B LTR ERV1 43 565 0 1805 154 0 3 chr9 90535907 90536193 -51735251 + AluJb SINE Alu 1 285 -27 2240 104 0 0 chr9 90536218 90536525 -51734919 + AluSg SINE Alu 1 307 -3 598 208 76 21 chr9 90536596 90536740 -51734704 + MLT1C LTR MaLR 5 156 -349 2345 63 0 35 chr9 90536760 90537077 -51734367 - AluY SINE Alu -5 306 1 2095 114 0 0 chr9 90537105 90537394 -51734050 + AluSx SINE Alu 1 289 -23 219 88 0 0 chr9 90537398 90537432 -51734012 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 849 119 0 0 chr9 90537443 90537561 -51733883 + FLAM_C SINE Alu 1 118 -25 741 214 107 19 chr9 90537602 90537808 -51733636 + MLT1C LTR MaLR 192 415 -52 1765 98 74 0 chr9 90537845 90538101 -51733343 - AluSx SINE Alu -23 289 15 1955 132 3 0 chr9 90538354 90538642 -51732802 - AluJb SINE Alu -18 294 6 443 135 81 0 chr9 90538754 90538828 -51732616 + FRAM SINE Alu 76 155 -21 2255 57 0 7 chr9 90538842 90539172 -51732272 + AluY SINE Alu 3 330 0 1635 126 0 0 chr9 90539174 90539445 -51731999 + AluSg SINE Alu 46 316 0 810 160 0 8 chr9 90539446 90539564 -51731880 + AluJb SINE Alu 2 120 -192 342 0 0 0 chr9 90539564 90539602 -51731842 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 810 160 0 8 chr9 90539602 90539614 -51731830 + AluJb SINE Alu 120 131 -181 382 218 119 10 chr9 90539647 90539748 -51731696 + MIR SINE MIR 56 167 -95 2381 83 0 6 chr9 90541018 90541332 -51730112 + AluSx SINE Alu 1 312 0 380 310 127 41 chr9 90541897 90542410 -51729034 + MLT1G1 LTR MaLR 16 572 -23 4387 149 19 19 chr9 90542605 90543009 -51728435 + LTR62 LTR ERVK 1 407 -312 1978 148 0 0 chr9 90543009 90543307 -51728137 - AluSx SINE Alu -14 298 1 4387 149 19 19 chr9 90543307 90543619 -51727825 + LTR62 LTR ERVK 406 717 -2 2221 76 0 54 chr9 90543721 90543903 -51727541 - AluSp SINE Alu -13 300 141 2223 65 0 36 chr9 90543903 90544212 -51727232 - AluY SINE Alu -1 310 13 2221 76 0 54 chr9 90544212 90544346 -51727098 - AluSp SINE Alu -172 141 1 291 202 48 138 chr9 90545113 90545301 -51726143 + HAL1 LINE L1 775 945 -1562 1622 109 0 0 chr9 90545319 90545549 -51725895 + AluSg SINE Alu 1 230 -80 489 265 73 45 chr9 90545555 90545910 -51725534 + HAL1 LINE L1 902 1266 -1241 1024 82 0 0 chr9 90545913 90546047 -51725397 + AluSg SINE Alu 1 134 -176 248 67 0 0 chr9 90546126 90546156 -51725288 - LTR6A LTR ERV1 -462 102 73 201 196 0 0 chr9 90547073 90547119 -51724325 + GA-rich Low_complexity Low_complexity 3 48 0 1985 126 7 7 chr9 90547161 90547470 -51723974 + AluSx SINE Alu 3 311 -1 23 0 0 0 chr9 90547476 90547499 -51723945 + AT_rich Low_complexity Low_complexity 1 23 0 642 201 8 15 chr9 90547556 90547690 -51723754 + FLAM_C SINE Alu 1 133 0 314 252 84 17 chr9 90548042 90548161 -51723283 + L1MC/D LINE L1 5646 5772 -2036 1828 228 49 21 chr9 90548174 90548640 -51722804 + MER21B LTR ERV1 330 808 -55 4634 199 50 20 chr9 90548746 90549110 -51722334 + MER21-int LTR ERV1 3084 3436 -3322 2272 94 0 0 chr9 90549110 90549409 -51722035 + AluSc SINE Alu 1 299 -10 4634 199 50 20 chr9 90549409 90550041 -51721403 + MER21-int LTR ERV1 3436 4110 -2648 999 134 102 38 chr9 90550045 90550231 -51721213 + AluJb SINE Alu 1 198 -114 506 219 12 24 chr9 90550231 90550400 -51721044 + GA-rich Low_complexity Low_complexity 2 168 0 393 254 52 8 chr9 90550408 90550542 -51720902 + MER21-int LTR ERV1 1218 1357 -2834 2016 106 3 0 chr9 90550580 90550863 -51720581 + AluSp SINE Alu 1 284 -29 2562 147 97 48 chr9 90550917 90551499 -51719945 - MER4B LTR ERV1 -9 770 1 1895 155 65 49 chr9 90551499 90551539 -51719905 - MSTD LTR MaLR -27 369 331 2122 95 7 3 chr9 90551539 90551834 -51719610 + AluSq SINE Alu 13 308 -5 1895 155 65 49 chr9 90551834 90552156 -51719288 - MSTD LTR MaLR -65 331 1 2178 129 132 5 chr9 90552201 90552581 -51718863 + MSTA LTR MaLR 1 428 0 277 350 42 0 chr9 90552740 90552860 -51718584 - L2 LINE L2 -191 3081 2957 2350 65 7 0 chr9 90552881 90553187 -51718257 - AluSp SINE Alu -5 308 1 2111 107 7 0 chr9 90553279 90553579 -51717865 + AluSx SINE Alu 1 302 -10 1233 153 109 109 chr9 90553916 90554047 -51717397 - LTR7 LTR ERV1 0 450 320 2215 82 0 0 chr9 90554047 90554340 -51717104 - AluY SINE Alu -14 297 5 1233 153 109 109 chr9 90554340 90554658 -51716786 - LTR7 LTR ERV1 -129 321 1 22 70 0 0 chr9 90554721 90554764 -51716680 + AT_rich Low_complexity Low_complexity 1 43 0 2252 81 0 3 chr9 90554827 90555124 -51716320 - AluY SINE Alu -15 296 1 1160 97 14 2 chr9 90555178 90555399 -51716045 + AluSx SINE Alu 38 296 -16 1709 130 0 0 chr9 90555576 90555829 -51715615 + AluSx SINE Alu 31 283 -29 1042 137 16 22 chr9 90555832 90555987 -51715457 + AluSq SINE Alu 127 281 -32 216 0 0 0 chr9 90555987 90556011 -51715433 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1440 174 3 69 chr9 90556013 90556347 -51715097 + AluJb SINE Alu 1 312 0 1042 137 16 22 chr9 90556347 90556370 -51715074 + AluSq SINE Alu 282 307 -6 1133 169 29 5 chr9 90556591 90556798 -51714646 - AluJo SINE Alu -92 220 9 225 65 0 0 chr9 90556961 90556992 -51714452 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 2165 73 4 4 chr9 90556992 90557267 -51714177 - AluSc SINE Alu -23 286 12 2836 217 142 50 chr9 90557727 90557798 -51713646 + HAL1 LINE L1 675 738 -1769 2599 42 0 0 chr9 90557798 90558109 -51713335 + AluY SINE Alu 1 311 0 2836 217 142 50 chr9 90558109 90559166 -51712278 + HAL1 LINE L1 738 1907 -600 413 102 17 0 chr9 90559692 90559751 -51711693 - MLT1B LTR MaLR -330 60 1 970 98 0 0 chr9 90559765 90559898 -51711546 - AluSc SINE Alu -14 295 163 457 130 14 0 chr9 90559910 90559979 -51711465 + AluSc SINE Alu 45 114 -195 594 95 0 0 chr9 90560085 90560159 -51711285 + AluSp SINE Alu 106 179 -134 246 139 0 0 chr9 90560206 90560242 -51711202 + Alu SINE Alu 1 36 -97 * 1441 80 0 5 chr9 90560224 90560412 -51711032 + PABL_A LTR ERV1 298 484 -176 772 150 8 15 chr9 90560412 90560545 -51710899 + FLAM_C SINE Alu 2 133 0 1465 89 0 5 chr9 90560571 90560762 -51710682 + PABL_A LTR ERV1 471 660 0 370 140 0 0 chr9 90560762 90560819 -51710625 + Alu SINE Alu 242 298 -3 441 196 65 0 chr9 90560826 90560918 -51710526 - MLT1E3 LTR MaLR -526 98 1 2040 121 6 22 chr9 90561007 90561322 -51710122 + AluSx SINE Alu 1 310 -2 809 251 173 34 chr9 90561608 90561990 -51709454 + LTR33 LTR ERVL 87 521 0 2347 80 0 0 chr9 90562134 90562433 -51709011 + AluY SINE Alu 2 300 -11 604 225 33 0 chr9 90562623 90562743 -51708701 - MLT1G1 LTR MaLR -15 580 457 333 279 73 15 chr9 90563049 90563185 -51708259 - MLT1G1 LTR MaLR -451 144 1 1857 147 7 3 chr9 90563946 90564246 -51707198 + AluSx SINE Alu 1 301 -11 330 241 207 12 chr9 90565349 90565486 -51705958 + MER5A DNA MER1_type 15 187 -2 2514 134 40 2 chr9 90565523 90565927 -51705517 + LTR62 LTR ERVK 1 419 -300 2350 87 0 0 chr9 90565940 90566251 -51705193 + AluY SINE Alu 1 311 0 2200 93 0 0 chr9 90566277 90566568 -51704876 + AluSx SINE Alu 5 295 -17 538 207 0 9 chr9 90566570 90566681 -51704763 - AluJo/FLAM SINE Alu -179 133 24 1698 144 102 0 chr9 90566705 90566990 -51704454 + LTR62 LTR ERVK 402 715 -4 3220 196 112 23 chr9 90567185 90567920 -51703524 - MER21B LTR ERV1 -63 800 1 2070 95 48 7 chr9 90568027 90568321 -51703123 + AluSg SINE Alu 2 307 -3 2763 166 69 13 chr9 90568322 90568859 -51702585 - MER21B-int LTR ERV1 -64 4127 3561 1152 56 0 7 chr9 90568860 90569004 -51702440 + AluY SINE Alu 1 143 -168 248 30 0 0 chr9 90569004 90569037 -51702407 + Alu SINE Alu 261 293 -7 1138 165 96 0 chr9 90569038 90569256 -51702188 - MER21B-int LTR ERV1 -617 3574 3336 1899 151 0 31 chr9 90569256 90569575 -51701869 + AluSx SINE Alu 1 309 -3 968 196 0 0 chr9 90569590 90569763 -51701681 - AluJ SINE Alu -11 301 129 10355 37 1 0 chr9 90569775 90571006 -51700438 - L1PA4 LINE L1 -3257 2889 1658 20450 35 7 0 chr9 90571007 90574238 -51697206 + L1PA4 LINE L1 2905 6155 0 765 142 8 8 chr9 90574242 90574362 -51697082 - AluJ SINE Alu -191 121 2 7562 210 25 40 chr9 90574364 90574491 -51696953 - MER21B-int LTR ERV1 -861 4972 4845 2030 108 10 17 chr9 90574491 90574787 -51696657 - AluSc SINE Alu -15 294 1 7562 210 25 40 chr9 90574787 90575137 -51696307 - MER21B-int LTR ERV1 -988 4845 4491 2061 118 0 3 chr9 90575137 90575449 -51695995 - AluSc SINE Alu 0 312 2 7562 210 25 40 chr9 90575449 90575705 -51695739 - MER21B-int LTR ERV1 -1342 4491 4233 1913 144 3 7 chr9 90575705 90576011 -51695433 + AluSx SINE Alu 1 305 -7 7562 210 25 40 chr9 90576011 90576988 -51694456 - MER21B-int LTR ERV1 -1600 4233 1697 687 218 7 25 chr9 90577017 90577191 -51694253 - MER21B-int LTR ERV1 -2065 4693 1673 4303 208 34 15 chr9 90577272 90578149 -51693295 - MER21B-int LTR ERV1 -3049 1142 249 2285 87 0 3 chr9 90578149 90578458 -51692986 - AluSg SINE Alu -2 308 1 1111 204 0 0 chr9 90578458 90578644 -51692800 - MER21B-int LTR ERV1 -4004 187 2 2030 222 76 28 chr9 90578667 90579231 -51692213 - MER21B LTR ERV1 -58 805 215 328 56 0 155 chr9 90579263 90579280 -51692164 + MER4A LTR ERV1 1 19 -645 2140 118 0 10 chr9 90579280 90579585 -51691859 - AluSx SINE Alu -10 302 1 328 56 0 155 chr9 90579585 90579638 -51691806 + MER4A LTR ERV1 19 60 -604 2447 65 0 3 chr9 90580390 90580698 -51690746 + AluSq SINE Alu 1 307 -6 609 231 16 0 chr9 90580910 90581031 -51690413 + MLT1G1 LTR MaLR 1 123 -472 238 301 0 39 chr9 90581031 90581093 -51690351 - MER81 DNA DNA -13 101 43 2014 118 0 52 chr9 90581093 90581229 -51690215 + AluSq SINE Alu 1 142 -171 2168 79 45 0 chr9 90581229 90581519 -51689925 + AluY SINE Alu 1 303 -8 2014 118 0 52 chr9 90581519 90581712 -51689732 + AluSq SINE Alu 142 313 0 238 301 0 39 chr9 90581712 90581752 -51689692 - MER81 DNA DNA -71 43 3 261 259 37 37 chr9 90581758 90581866 -51689578 + MLT1G1 LTR MaLR 81 188 -402 1771 226 22 52 chr9 90581871 90581911 -51689533 + MER74B LTR ERVL 56 96 -526 528 191 162 0 chr9 90581911 90582016 -51689428 - FLAM_A SINE Alu -10 123 2 1771 226 22 52 chr9 90582016 90582439 -51689005 + MER74B LTR ERVL 96 505 -117 885 172 0 0 chr9 90583324 90583469 -51687975 - AluSg/x SINE Alu -33 277 133 2006 113 19 41 chr9 90583469 90583788 -51687656 - AluSx SINE Alu 0 312 1 208 154 0 26 chr9 90584652 90584691 -51686753 + T-rich Low_complexity Low_complexity 1 38 0 2275 92 3 0 chr9 90584729 90585032 -51686412 + AluSg SINE Alu 1 304 -6 1754 101 11 19 chr9 90585268 90585536 -51685908 - AluSg SINE Alu -5 305 40 1020 223 64 86 chr9 90585657 90586177 -51685267 + MER34B LTR ERV1 18 565 0 2014 140 7 0 chr9 90586206 90586513 -51684931 + AluJo SINE Alu 1 309 -3 1967 106 0 7 chr9 90586731 90587039 -51684405 - AluSc SINE Alu 0 306 1 289 213 0 16 chr9 90587039 90587100 -51684344 + MLT1J LTR MaLR 452 511 0 2168 106 0 0 chr9 90587716 90588009 -51683435 + AluSg SINE Alu 1 293 -17 1945 111 11 0 chr9 90588011 90588319 -51683125 + AluSg SINE Alu 1 311 0 2060 103 17 0 chr9 90588894 90589184 -51682260 + AluSx SINE Alu 1 295 -17 1663 162 3 30 chr9 90589231 90589534 -51681910 - AluJb SINE Alu -17 295 1 969 125 5 99 chr9 90589559 90589751 -51681693 + AluSg/x SINE Alu 125 298 -12 2185 111 0 0 chr9 90589753 90590059 -51681385 + AluSc SINE Alu 1 306 -3 1234 198 74 62 chr9 90590531 90590870 -51680574 - MER31B LTR ERV1 0 466 124 943 129 0 0 chr9 90590900 90591039 -51680405 + AluSq/x SINE Alu 2 140 -173 2042 113 3 0 chr9 90591045 90591336 -51680108 + AluSx SINE Alu 13 304 -8 239 0 32 0 chr9 90591336 90591367 -51680077 + (TA)n Simple_repeat Simple_repeat 1 32 0 329 216 29 69 chr9 90591367 90591469 -51679975 - L1MCa LINE L1 -4358 2068 1971 * 338 228 55 71 chr9 90591431 90591558 -51679886 + L1MCa LINE L1 1952 2076 -4350 * 377 244 12 88 chr9 90591490 90591650 -51679794 - L1MCa LINE L1 -4361 2065 1918 244 36 107 0 chr9 90591656 90591712 -51679732 + (TA)n Simple_repeat Simple_repeat 2 63 0 465 95 71 24 chr9 90591713 90591882 -51679562 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 1754 109 55 80 chr9 90591899 90592266 -51679178 - THE1C LTR MaLR -11 446 3 763 198 51 82 chr9 90592604 90592860 -51678584 + MER39 LTR ERV1 164 535 -172 2391 77 3 3 chr9 90592869 90593182 -51678262 + AluSp SINE Alu 1 313 0 913 132 0 0 chr9 90593194 90593330 -51678114 + AluSg/x SINE Alu 154 289 -23 719 178 34 87 chr9 90593336 90593492 -51677952 + MER39 LTR ERV1 441 538 -27 1423 222 7 0 chr9 90593492 90593785 -51677659 - AluJb SINE Alu -17 295 1 719 178 34 87 chr9 90593785 90593812 -51677632 + MER39 LTR ERV1 538 565 0 2235 99 0 0 chr9 90593950 90594254 -51677190 - AluY SINE Alu -7 304 1 1491 174 3 45 chr9 90594550 90594696 -51676748 + AluJo SINE Alu 1 129 -183 1887 139 10 0 chr9 90594696 90594998 -51676446 + AluSx SINE Alu 6 310 -2 1491 174 3 45 chr9 90594998 90595161 -51676283 + AluJo SINE Alu 129 297 -15 522 70 0 0 chr9 90595604 90595675 -51675769 + (TCCCC)n Simple_repeat Simple_repeat 5 75 0 1158 167 72 72 chr9 90595679 90595850 -51675594 - AluJo SINE Alu -39 273 100 1756 177 0 7 chr9 90595850 90596150 -51675294 + AluJo SINE Alu 2 299 -13 1158 167 72 72 chr9 90596150 90596241 -51675203 - AluJo SINE Alu -211 101 11 539 146 0 73 chr9 90596274 90596294 -51675150 - FLAM_C SINE Alu -171 131 111 1545 126 0 13 chr9 90596294 90596525 -51674919 - AluSx SINE Alu -84 228 1 539 146 0 73 chr9 90596525 90596614 -51674830 - FLAM_C SINE Alu -191 111 30 826 130 123 45 chr9 90596614 90596768 -51674676 + AluSg/x SINE Alu 133 298 -14 2227 73 37 7 chr9 90596830 90597130 -51674314 - AluSp SINE Alu -4 309 1 763 189 34 7 chr9 90597130 90597278 -51674166 + MER67C LTR ERV1 125 276 -434 451 229 57 0 chr9 90597275 90597380 -51674064 + MER67C LTR ERV1 230 340 -370 * 916 182 36 0 chr9 90597378 90597570 -51673874 + MER67C LTR ERV1 506 704 -6 366 276 12 92 chr9 90597638 90597681 -51673763 + MER5B DNA MER1_type 21 66 -112 1841 132 0 40 chr9 90597681 90597984 -51673460 + AluSx SINE Alu 1 291 -21 366 276 12 92 chr9 90597984 90598103 -51673341 + MER5B DNA MER1_type 66 170 -8 2835 57 6 3 chr9 90598365 90598716 -51672728 - THE1A LTR MaLR 0 355 4 1877 137 0 0 chr9 90598716 90599000 -51672444 + AluJo SINE Alu 17 300 -12 933 166 41 133 chr9 90599167 90599283 -51672161 - MER31B LTR ERV1 -2 464 339 1944 113 3 0 chr9 90599283 90599565 -51671879 + AluSq SINE Alu 19 301 -12 2256 89 0 3 chr9 90599570 90599874 -51671570 + AluSp SINE Alu 1 303 -10 933 166 41 133 chr9 90599874 90599887 -51671557 - MER31B LTR ERV1 -131 335 322 2256 92 0 16 chr9 90599887 90600202 -51671242 + AluSg SINE Alu 1 310 0 933 166 41 133 chr9 90600202 90600385 -51671059 - MER31B LTR ERV1 -144 322 58 1521 124 71 38 chr9 90600387 90600677 -51670767 + MER39B LTR ERV1 1 268 -385 777 164 0 0 chr9 90600678 90600800 -51670644 + AluJo SINE Alu 2 123 -189 22 35 0 0 chr9 90600800 90600829 -51670615 + AT_rich Low_complexity Low_complexity 1 29 0 2266 118 16 16 chr9 90600829 90601193 -51670251 + MER39B LTR ERV1 255 618 -35 1114 105 0 7 chr9 90601193 90601346 -51670098 + LTR8 LTR ERV1 1 152 -539 210 143 48 0 chr9 90601348 90601390 -51670054 + T-rich Low_complexity Low_complexity 5 48 0 4335 87 2 9 chr9 90601430 90601444 -51670000 + LTR8 LTR ERV1 124 137 -554 2256 67 0 0 chr9 90601444 90601762 -51669682 - AluY SINE Alu 0 318 1 4335 87 2 9 chr9 90601762 90602318 -51669126 + LTR8 LTR ERV1 137 691 0 307 119 0 0 chr9 90602318 90602357 -51669087 + LTR49 LTR ERV1 557 595 0 346 221 15 0 chr9 90602374 90602442 -51669002 - MER31B LTR ERV1 -373 93 25 2129 80 59 0 chr9 90602591 90602877 -51668567 - AluSq SINE Alu -10 303 1 366 286 32 23 chr9 90602887 90603162 -51668282 + L1M4 LINE L1 3376 3672 -2474 646 204 16 59 chr9 90603163 90603317 -51668127 + AluJo SINE Alu 124 283 -29 180 0 0 0 chr9 90603317 90603337 -51668107 + (TA)n Simple_repeat Simple_repeat 2 21 0 1832 155 14 0 chr9 90603345 90603641 -51667803 + AluSx SINE Alu 3 302 -10 646 204 16 59 chr9 90603641 90603663 -51667781 + AluJo SINE Alu 290 301 -11 1000 250 78 6 chr9 90603664 90603996 -51667448 + L1M4 LINE L1 3676 4031 -2115 2709 85 6 0 chr9 90604085 90604438 -51667006 + THE1A LTR MaLR 1 355 0 11458 101 4 15 chr9 90604438 90604855 -51666589 + THE1A-int LTR MaLR 1 421 -1159 2248 90 7 0 chr9 90604855 90605154 -51666290 - AluSc SINE Alu -7 302 2 11458 101 4 15 chr9 90605154 90605949 -51665495 + THE1A-int LTR MaLR 421 1193 -387 2276 73 0 22 chr9 90605949 90606265 -51665179 - AluY SINE Alu -2 309 1 11458 101 4 15 chr9 90606265 90606649 -51664795 + THE1A-int LTR MaLR 1193 1580 0 2596 102 8 0 chr9 90606649 90607001 -51664443 + THE1A LTR MaLR 1 355 0 2450 66 0 0 chr9 90607215 90607519 -51663925 - AluSp SINE Alu -9 304 1 2146 103 0 26 chr9 90607521 90607831 -51663613 - AluSx SINE Alu -10 302 1 1836 177 68 133 chr9 90607854 90608234 -51663210 + LTR44 LTR ERV1 1 404 -115 1775 83 0 0 chr9 90608234 90608464 -51662980 + AluSg/x SINE Alu 69 298 -12 1836 177 68 133 chr9 90608464 90608481 -51662963 + LTR44 LTR ERV1 404 421 -98 757 130 8 38 chr9 90608481 90608612 -51662832 + FLAM_C SINE Alu 5 131 -2 1836 177 68 133 chr9 90608612 90608768 -51662676 + LTR44 LTR ERV1 421 519 0 1269 208 29 7 chr9 90608768 90609042 -51662402 + MER74A LTR ERVL 145 424 -134 2498 46 3 0 chr9 90609110 90609416 -51662028 - AluY SINE Alu -4 307 1 647 218 34 14 chr9 90609554 90609701 -51661743 + MER21B LTR ERV1 98 247 -616 2131 101 0 0 chr9 90609722 90610009 -51661435 + AluSq SINE Alu 1 287 -26 1870 116 4 4 chr9 90610018 90610295 -51661149 + AluSx SINE Alu 1 277 -35 2155 94 7 23 chr9 90610323 90610631 -51660813 + AluSq SINE Alu 1 303 -10 4947 106 16 1 chr9 90610646 90611327 -51660117 - LTR8 LTR ERV1 0 691 1 25 65 0 0 chr9 90611438 90611484 -51659960 + AT_rich Low_complexity Low_complexity 1 46 0 821 200 44 0 chr9 90611494 90611654 -51659790 - L1MDa LINE L1 -6321 219 53 * 849 260 27 4 chr9 90611651 90611909 -51659535 + L1M4 LINE L1 3418 3681 -2465 689 188 0 17 chr9 90611920 90612037 -51659407 + FLAM_C SINE Alu 4 118 -25 1300 192 64 21 chr9 90612059 90612387 -51659057 + L1M4 LINE L1 3685 4026 -2120 1011 167 183 41 chr9 90612387 90612667 -51658777 + AluJb SINE Alu 2 316 0 225 295 49 0 chr9 90612667 90612728 -51658716 + L1M4 LINE L1 4019 4082 -2064 555 208 7 62 chr9 90612737 90612881 -51658563 + L1M4 LINE L1 4067 4202 -1944 1780 142 7 3 chr9 90612884 90613179 -51658265 + AluSx SINE Alu 1 296 -16 1884 138 3 0 chr9 90613181 90613471 -51657973 + AluSx SINE Alu 2 292 -20 231 36 0 0 chr9 90613515 90613543 -51657901 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1685 65 22 4 chr9 90613552 90613782 -51657662 - AluY SINE Alu -77 234 1 567 225 25 0 chr9 90613802 90613922 -51657522 - AluSq/x SINE Alu -189 124 2 1916 246 71 14 chr9 90613987 90614471 -51656973 + L1M4 LINE L1 4312 4844 -1302 558 0 0 0 chr9 90614471 90614533 -51656911 + (CATAA)n Simple_repeat Simple_repeat 3 64 0 1916 246 71 14 chr9 90614533 90614693 -51656751 + L1M4 LINE L1 4844 4993 -1153 1995 117 13 10 chr9 90614694 90615076 -51656368 + AluSg1 SINE Alu 1 383 0 1403 129 0 0 chr9 90615107 90615317 -51656127 + AluSg/x SINE Alu 100 309 -3 455 212 25 117 chr9 90615326 90615642 -51655802 + L1MEc LINE L1 1189 1475 -5088 237 214 44 89 chr9 90615649 90615790 -51655654 + L1MEc LINE L1 1304 1508 -4864 1683 168 0 29 chr9 90615795 90616105 -51655339 + AluJb SINE Alu 3 303 -9 2419 123 5 45 chr9 90616164 90616340 -51655104 + MER61E LTR ERV1 1 183 -386 2363 74 3 7 chr9 90616340 90616650 -51654794 + AluY SINE Alu 1 309 -2 2419 123 5 45 chr9 90616650 90616871 -51654573 + MER61E LTR ERV1 183 382 -187 1474 76 10 0 chr9 90616871 90617068 -51654376 + AluSq SINE Alu 1 199 -114 409 63 32 0 chr9 90617069 90617132 -51654312 + AluSq SINE Alu 241 305 -7 324 65 22 0 chr9 90617137 90617183 -51654261 + Alu SINE Alu 2 48 -253 201 138 0 0 chr9 90617755 90617784 -51653660 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 816 77 103 0 chr9 90618019 90618136 -51653308 + MER85 DNA T2_type 1 129 -10 2368 80 0 3 chr9 90618711 90619023 -51652421 + AluSq SINE Alu 1 311 -2 1834 148 13 7 chr9 90619025 90619329 -51652115 + AluSx SINE Alu 1 306 -6 975 222 68 8 chr9 90619550 90619784 -51651660 + AluJo SINE Alu 1 248 -64 483 224 42 7 chr9 90619983 90620126 -51651318 - L1MB8 LINE L1 0 6178 6031 2101 178 42 65 chr9 90620126 90620159 -51651285 - LTR8A LTR ERV1 0 727 695 5097 99 0 23 chr9 90620159 90620866 -51650578 - LTR8 LTR ERV1 0 691 1 2101 178 42 65 chr9 90620866 90621309 -51650135 - LTR8A LTR ERV1 -32 695 262 375 189 67 18 chr9 90621329 90621435 -51650009 - L1MB8 LINE L1 -139 6035 5930 751 189 0 0 chr9 90621479 90621627 -51649817 - L1M4 LINE L1 -1734 4412 4265 539 43 0 0 chr9 90621631 90621701 -51649743 - AluSp SINE Alu -9 304 235 1359 89 6 0 chr9 90621701 90621880 -51649564 - AluSp SINE Alu -133 180 1 322 202 47 54 chr9 90621917 90622046 -51649398 + L1MC/D LINE L1 5361 5488 -2320 333 140 35 0 chr9 90622118 90622175 -51649269 + LTR8 LTR ERV1 1 59 -632 * 594 43 0 0 chr9 90622169 90622239 -51649205 + U3 snRNA snRNA 1 70 -147 7437 37 10 0 chr9 90622239 90623896 -51647548 + L1PA5 LINE L1 4492 6153 -1 4151 119 16 66 chr9 90623905 90623920 -51647524 + LTR8 LTR ERV1 29 43 -648 279 0 0 0 chr9 90623920 90623951 -51647493 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 369 0 0 0 chr9 90623950 90623991 -51647453 + (GA)n Simple_repeat Simple_repeat 2 42 0 4151 119 16 66 chr9 90623951 90624510 -51646934 + LTR8 LTR ERV1 43 628 -63 2229 93 0 3 chr9 90624510 90624810 -51646634 + AluSg SINE Alu 1 299 -11 2186 77 3 10 chr9 90624810 90625110 -51646334 + AluY SINE Alu 1 298 -13 4151 119 16 66 chr9 90625110 90625271 -51646173 + LTR8 LTR ERV1 626 691 0 2113 107 3 7 chr9 90625403 90625692 -51645752 - AluSq SINE Alu -25 288 1 264 267 143 45 chr9 90626067 90626333 -51645111 - L2 LINE L2 -1 3312 3021 182 162 0 27 chr9 90626465 90626502 -51644942 - L2 LINE L2 -5 3267 3232 2526 74 6 0 chr9 90626621 90626932 -51644512 - AluSp SINE Alu 0 313 1 2587 178 25 66 chr9 90627156 90627504 -51643940 - MER34C LTR ERV1 -4 581 266 2145 96 0 31 chr9 90627504 90627851 -51643593 + AluSp SINE Alu 1 338 0 2587 178 25 66 chr9 90627851 90628107 -51643337 - MER34C LTR ERV1 -319 266 1 1170 132 76 9 chr9 90628135 90628415 -51643029 + LTR54 LTR ERV1 4 364 -146 4979 55 25 36 chr9 90628418 90629093 -51642351 + MER4E LTR ERV1 1 668 -98 1847 150 87 23 chr9 90629102 90629448 -51641996 - LTR10A LTR ERV1 -61 548 181 632 93 12 0 chr9 90629508 90629594 -51641850 + AluSp SINE Alu 120 206 -107 261 218 138 11 chr9 90629612 90629699 -51641745 - LTR10A LTR ERV1 -511 98 1 467 82 0 55 chr9 90629699 90629772 -51641672 + MER4E LTR ERV1 665 733 -33 451 275 22 0 chr9 90629789 90629927 -51641517 + MER57A LTR ERV1 258 398 -5 595 126 0 21 chr9 90630231 90630326 -51641118 - AluJ/FLAM SINE Alu -215 97 5 205 324 15 0 chr9 90630340 90630408 -51641036 - L2 LINE L2 -20 3293 3225 2004 94 205 51 chr9 90630814 90630868 -51640576 - MSTC LTR MaLR 0 428 384 2238 125 0 0 chr9 90630868 90631171 -51640273 - AluSx SINE Alu -9 303 1 2004 94 205 51 chr9 90631171 90631487 -51639957 - MSTC LTR MaLR -44 384 1 2460 78 0 7 chr9 90632040 90632347 -51639097 - AluSq SINE Alu -8 305 1 431 246 82 22 chr9 90632476 90632610 -51638834 + FLAM_A SINE Alu 1 142 0 738 281 111 31 chr9 90632743 90633284 -51638160 - L1MC4 LINE L1 0 8042 7459 2309 110 0 7 chr9 90633418 90633728 -51637716 - AluSq SINE Alu -5 308 1 26 0 0 0 chr9 90633740 90633766 -51637678 + AT_rich Low_complexity Low_complexity 1 26 0 1045 169 128 64 chr9 90633775 90633885 -51637559 - AluJo SINE Alu -36 276 174 2136 131 0 0 chr9 90633885 90634176 -51637268 - AluSx SINE Alu -21 291 1 1045 169 128 64 chr9 90634176 90634314 -51637130 - AluJo SINE Alu -138 174 12 728 205 58 18 chr9 90634406 90634577 -51636867 + MER20 DNA MER1_type 40 217 -2 2101 124 0 13 chr9 90634686 90634985 -51636459 + AluSx SINE Alu 1 295 -17 200 184 0 0 chr9 90636181 90636219 -51635225 + (CCCCG)n Simple_repeat Simple_repeat 5 42 0 22 35 0 0 chr9 90636234 90636263 -51635181 + GC_rich Low_complexity Low_complexity 1 29 0 21 82 0 0 chr9 90636304 90636353 -51635091 + GC_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr9 90636530 90636555 -51634889 + GC_rich Low_complexity Low_complexity 1 25 0 29 84 0 0 chr9 90636584 90636655 -51634789 + GC_rich Low_complexity Low_complexity 1 71 0 210 287 28 14 chr9 90636784 90636927 -51634517 + G-rich Low_complexity Low_complexity 4 148 0 256 301 83 38 chr9 90639912 90640045 -51631399 + MIR SINE MIR 118 256 -6 405 58 0 0 chr9 90640494 90640546 -51630898 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 180 295 173 14 chr9 90640579 90640718 -51630726 + MIR SINE MIR 101 261 -1 2306 84 0 7 chr9 90641346 90641645 -51629799 - AluSc SINE Alu -2 307 11 540 271 224 52 chr9 90641683 90641748 -51629696 - L1MC4a LINE L1 -799 7009 6957 1992 133 7 13 chr9 90641748 90642049 -51629395 - AluSx SINE Alu -13 299 1 540 271 224 52 chr9 90642049 90642709 -51628735 - L1MC4a LINE L1 -851 6957 6412 2634 40 3 0 chr9 90642709 90643008 -51628436 - AluY SINE Alu -11 300 1 540 271 224 52 chr9 90643008 90643449 -51627995 - L1MC4a LINE L1 -1396 6412 5641 617 230 0 8 chr9 90643513 90643639 -51627805 - AluJo SINE Alu -177 135 11 2272 117 0 0 chr9 90643667 90643975 -51627469 + AluSg SINE Alu 1 308 -2 1309 102 57 0 chr9 90643975 90644152 -51627292 + AluSg/x SINE Alu 109 295 -17 2253 103 0 17 chr9 90644219 90644521 -51626923 + AluSx SINE Alu 5 301 -11 2986 120 76 22 chr9 90644606 90645146 -51626298 - Tigger3(Golem) DNA MER2_type -6 3023 2455 340 182 0 30 chr9 90645155 90645221 -51626223 - Tigger3(Golem) DNA MER2_type -2964 65 2 187 315 61 26 chr9 90645240 90645442 -51626002 + L2 LINE L2 2836 3052 -220 1931 133 14 7 chr9 90645530 90645824 -51625620 - AluSx SINE Alu -16 296 1 1563 157 0 94 chr9 90645832 90646151 -51625293 - AluJb SINE Alu -23 289 1 2196 86 31 0 chr9 90646476 90646767 -51624677 - AluSp SINE Alu -13 300 1 1374 206 79 59 chr9 90646868 90646936 -51624508 - MLT2F LTR ERVL -44 619 554 2505 61 0 7 chr9 90646936 90647232 -51624212 - AluSg SINE Alu -16 294 1 1374 206 79 59 chr9 90647232 90647715 -51623729 - MLT2F LTR ERVL -109 554 8 1488 246 51 29 chr9 90647821 90648366 -51623078 + ERVL LTR ERVL 564 1190 -4574 2162 123 3 0 chr9 90648464 90648764 -51622680 + AluSx SINE Alu 1 301 -11 914 167 0 0 chr9 90648764 90648908 -51622536 + AluJb SINE Alu 134 277 -35 671 275 64 34 chr9 90648965 90649276 -51622168 + L1MC4a LINE L1 5528 5852 -269 1468 154 47 104 chr9 90649276 90649640 -51621804 + MER2 DNA MER2_type 1 343 -1 671 275 64 34 chr9 90649640 90649696 -51621748 + L1MC4a LINE L1 5852 5905 -216 5470 131 65 34 chr9 90649771 90649891 -51621553 - L1MA4A LINE L1 -1 6302 6187 1998 131 0 7 chr9 90649891 90650188 -51621256 - AluSx SINE Alu -12 300 6 5470 131 65 34 chr9 90650188 90651189 -51620255 - L1MA4A LINE L1 -116 6187 5151 295 275 89 53 chr9 90651186 90651349 -51620095 - L1MDa LINE L1 -3568 2972 2816 * 1538 153 7 49 chr9 90651349 90651637 -51619807 + AluJb SINE Alu 23 298 -14 295 275 89 53 chr9 90651637 90651775 -51619669 - L1MDa LINE L1 -3724 2816 2660 5388 107 100 123 chr9 90651790 90652534 -51618910 - Tigger3b DNA MER2_type -1801 1227 468 2525 81 3 0 chr9 90652534 90652844 -51618600 + AluSq SINE Alu 1 311 -2 5388 107 100 123 chr9 90652844 90653128 -51618316 - Tigger3b DNA MER2_type -2560 468 179 2388 77 0 0 chr9 90653128 90653427 -51618017 - AluSg SINE Alu -11 299 1 5388 107 100 123 chr9 90653427 90653441 -51618003 - Tigger3b DNA MER2_type -2849 179 166 701 200 79 18 chr9 90653441 90653606 -51617838 - FAM SINE Alu 0 175 1 5388 107 100 123 chr9 90653606 90653738 -51617706 - Tigger3b DNA MER2_type -2862 166 78 1417 184 83 0 chr9 90653738 90653898 -51617546 - AluJb SINE Alu -12 300 155 396 88 0 0 chr9 90653898 90653955 -51617489 + (TG)n Simple_repeat Simple_repeat 2 58 0 1417 184 83 0 chr9 90653955 90654071 -51617373 - AluJb SINE Alu -157 155 1 5388 107 100 123 chr9 90654071 90654148 -51617296 - Tigger3b DNA MER2_type -2950 78 1 2169 107 0 7 chr9 90654193 90654492 -51616952 - AluY SINE Alu -14 297 1 189 0 0 0 chr9 90655036 90655057 -51616387 + (A)n Simple_repeat Simple_repeat 1 21 0 1774 126 7 29 chr9 90655057 90655335 -51616109 - AluSx SINE Alu -31 281 10 256 237 0 0 chr9 90655342 90655401 -51616043 - L1MDa LINE L1 -4620 1920 1862 906 134 0 0 chr9 90655429 90655548 -51615896 + FLAM_C SINE Alu 1 119 -24 22 0 0 0 chr9 90655548 90655570 -51615874 + AT_rich Low_complexity Low_complexity 1 22 0 1852 159 0 20 chr9 90655666 90655967 -51615477 - AluJb SINE Alu -17 295 1 386 254 89 28 chr9 90655972 90656184 -51615260 - L1MDa LINE L1 -4812 1728 1427 2119 131 3 0 chr9 90656269 90656575 -51614869 - AluSg SINE Alu -3 307 1 2286 52 49 0 chr9 90656576 90656862 -51614582 - AluSq SINE Alu -13 300 1 339 44 0 0 chr9 90656866 90656911 -51614533 + (TG)n Simple_repeat Simple_repeat 2 46 0 2285 88 3 0 chr9 90656911 90657195 -51614249 - AluSp SINE Alu -28 285 1 2458 66 3 13 chr9 90657454 90657757 -51613687 + AluY SINE Alu 1 300 -11 243 0 0 0 chr9 90658063 90658090 -51613354 + (TG)n Simple_repeat Simple_repeat 1 27 0 238 381 0 0 chr9 90658622 90658761 -51612683 + (CCA)n Simple_repeat Simple_repeat 3 141 0 1705 194 0 3 chr9 90659422 90659715 -51611729 - AluJo SINE Alu -20 292 1 2296 70 7 26 chr9 90659792 90660094 -51611350 + AluY SINE Alu 1 296 -15 533 206 38 30 chr9 90660106 90660237 -51611207 - L1MC5 LINE L1 -1106 6855 6724 560 197 79 0 chr9 90660419 90660546 -51610898 - Charlie4 DNA MER1_type -19 1942 1806 2294 86 7 3 chr9 90660591 90660882 -51610562 - AluSg SINE Alu -18 292 1 1943 117 33 52 chr9 90660966 90661273 -51610171 - AluSx SINE Alu -11 301 1 1828 136 22 54 chr9 90661279 90661596 -51609848 - AluSx SINE Alu -5 307 1 939 271 110 79 chr9 90661757 90662367 -51609077 - MER21B LTR ERV1 -211 652 24 932 233 32 0 chr9 90662527 90662746 -51608698 - Charlie4 DNA MER1_type -1711 250 25 2266 101 0 3 chr9 90662807 90663104 -51608340 - AluY SINE Alu -15 296 1 1468 188 28 28 chr9 90663332 90663620 -51607824 - AluJb SINE Alu -20 292 5 2206 89 0 43 chr9 90663652 90663956 -51607488 - AluY SINE Alu -20 291 1 867 201 18 12 chr9 90664223 90664387 -51607057 - FRAM SINE Alu -1 165 1 2399 104 3 0 chr9 90664516 90664823 -51606621 - AluSp SINE Alu -5 308 1 2320 231 107 51 chr9 90665147 90665354 -51606090 - MER21B LTR ERV1 -11 852 658 2019 127 3 3 chr9 90665354 90665668 -51605776 - AluSx SINE Alu 0 318 5 2320 231 107 51 chr9 90665668 90666256 -51605188 - MER21B LTR ERV1 -205 658 12 318 268 83 45 chr9 90666685 90666842 -51604602 + MIR SINE MIR 58 220 -42 1894 159 151 43 chr9 90666981 90667464 -51603980 + LTR10A LTR ERV1 14 548 -61 1986 198 106 21 chr9 90667640 90667939 -51603505 + LTR54 LTR ERV1 1 356 -154 2410 130 189 43 chr9 90667939 90667994 -51603450 - LTR24C LTR ERV1 0 635 589 2195 85 7 3 chr9 90667994 90668304 -51603140 + AluSp SINE Alu 1 311 0 2410 130 189 43 chr9 90668304 90668801 -51602643 - LTR24C LTR ERV1 -46 589 1 1986 198 106 21 chr9 90668801 90668971 -51602473 + LTR54 LTR ERV1 356 510 0 351 265 87 84 chr9 90668985 90669190 -51602254 - L1MC4 LINE L1 -130 7912 7709 192 40 0 0 chr9 90669190 90669215 -51602229 + (TG)n Simple_repeat Simple_repeat 2 26 0 1181 174 140 34 chr9 90669215 90669479 -51601965 - AluJb SINE Alu -10 292 1 351 265 87 84 chr9 90669479 90669777 -51601667 - L1MC4 LINE L1 -332 7710 7300 454 304 31 51 chr9 90669808 90670101 -51601343 - L1MC4 LINE L1 -558 7484 7198 22 0 0 0 chr9 90670557 90670579 -51600865 + AT_rich Low_complexity Low_complexity 1 22 0 2294 106 3 0 chr9 90670608 90670909 -51600535 - AluSq SINE Alu -11 302 1 209 57 29 0 chr9 90671323 90671358 -51600086 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1801 115 91 0 chr9 90671364 90671616 -51599828 - AluSx SINE Alu -37 275 1 26 0 0 0 chr9 90671625 90671651 -51599793 + AT_rich Low_complexity Low_complexity 1 26 0 1864 155 7 14 chr9 90671678 90671968 -51599476 - AluSx SINE Alu -24 288 1 810 310 93 40 chr9 90672208 90672925 -51598519 - L2 LINE L2 -2054 1260 506 2322 96 10 0 chr9 90673298 90673590 -51597854 + AluSc SINE Alu 1 295 -14 21 36 0 0 chr9 90674513 90674541 -51596903 + AT_rich Low_complexity Low_complexity 1 28 0 289 220 60 131 chr9 90675410 90675495 -51595949 + MIR SINE MIR 74 143 -119 1892 112 53 30 chr9 90675495 90675799 -51595645 - AluSx SINE Alu -1 311 1 289 220 60 131 chr9 90675799 90675881 -51595563 + MIR SINE MIR 143 229 -33 2060 156 17 14 chr9 90676073 90676432 -51595012 - L1PA16 LINE L1 -2 6164 5805 3698 186 89 40 chr9 90676742 90676760 -51594684 - MER21B LTR ERV1 -2 861 845 1491 179 36 36 chr9 90676760 90677068 -51594376 - AluJo SINE Alu -4 308 1 3698 186 89 40 chr9 90677068 90677870 -51593574 - MER21B LTR ERV1 -18 845 1 682 260 232 16 chr9 90678112 90678435 -51593009 - MLT1G LTR MaLR -197 393 1 2425 91 0 7 chr9 90678777 90679085 -51592359 - AluSp SINE Alu -7 306 1 2165 97 3 17 chr9 90679191 90679490 -51591954 - AluSx SINE Alu -17 295 1 333 244 115 77 chr9 90679494 90679667 -51591777 - HAL1 LINE L1 -1008 1499 1309 1385 183 81 7 chr9 90679667 90679940 -51591504 + AluJo SINE Alu 1 293 -19 333 244 115 77 chr9 90679940 90680053 -51591391 - HAL1 LINE L1 -1198 1309 1202 2128 103 11 0 chr9 90680097 90680378 -51591066 - AluSx SINE Alu -18 294 11 2113 113 3 17 chr9 90680386 90680687 -51590757 - AluSg SINE Alu -13 297 1 577 204 0 20 chr9 90680819 90680917 -51590527 - FLAM_A SINE Alu -46 96 1 326 272 109 87 chr9 90680918 90680984 -51590460 - HAL1 LINE L1 -1471 1036 973 1853 139 0 11 chr9 90680984 90681271 -51590173 - AluJb SINE Alu -16 296 13 326 272 109 87 chr9 90681271 90681516 -51589928 - HAL1 LINE L1 -1534 973 718 230 319 17 35 chr9 90681618 90681727 -51589717 - MER110 LTR ERV1 -29 462 356 962 137 83 69 chr9 90681727 90681931 -51589513 - MER6B DNA MER2_type 0 210 4 210 242 15 30 chr9 90682202 90682334 -51589110 + (TTATA)n Simple_repeat Simple_repeat 1 130 0 1027 235 56 109 chr9 90682479 90682675 -51588769 - L1MC4a LINE L1 -1919 5889 5684 1939 144 17 0 chr9 90682675 90682967 -51588477 + AluSx SINE Alu 1 297 -15 1027 235 56 109 chr9 90682967 90683105 -51588339 - L1MC4a LINE L1 -2124 5684 5587 1515 141 39 0 chr9 90683105 90683339 -51588105 - AluJb SINE Alu -1 311 69 1027 235 56 109 chr9 90683339 90683500 -51587944 - L1MC4a LINE L1 -2221 5587 5419 519 329 169 3 chr9 90683654 90683998 -51587446 - HAL1 LINE L1 -587 1920 1520 773 176 0 15 chr9 90684003 90684134 -51587310 - FLAM_A SINE Alu -4 129 1 3105 146 119 79 chr9 90684227 90684655 -51586789 - L1MC1 LINE L1 -6 6327 5918 2856 3 0 3 chr9 90684655 90684965 -51586479 - AluYa5 SINE Alu -2 309 1 3105 146 119 79 chr9 90684965 90685116 -51586328 - L1MC1 LINE L1 -415 5918 5775 1832 184 0 0 chr9 90685116 90685425 -51586019 + AluJb SINE Alu 1 309 -3 3105 146 119 79 chr9 90685425 90685606 -51585838 - L1MC1 LINE L1 -558 5775 5535 1983 216 24 71 chr9 90685599 90685780 -51585664 - L1MCa LINE L1 -2935 3491 3303 * 1991 126 25 0 chr9 90685780 90686065 -51585379 + AluSg SINE Alu 3 294 -16 1983 216 24 71 chr9 90686065 90686599 -51584845 - L1MCa LINE L1 -3123 3303 2810 474 202 0 11 chr9 90686601 90686690 -51584754 + Tigger4(Zombi) DNA MER2_type 2 89 -2642 5044 120 74 2 chr9 90686692 90687493 -51583951 + Tigger4(Zombi) DNA MER2_type 1873 2730 -1 1032 251 36 14 chr9 90687496 90688053 -51583391 - L1MCa LINE L1 -3618 2808 2242 296 166 0 69 chr9 90688053 90688127 -51583317 - AluJb SINE Alu -169 133 76 476 140 54 0 chr9 90688129 90688222 -51583222 - L1MCa LINE L1 -4098 2328 2231 810 147 7 29 chr9 90688222 90688358 -51583086 - AluJb SINE Alu -179 133 1 449 129 0 0 chr9 90688365 90688435 -51583009 - L1MCa LINE L1 -4186 2240 2171 281 313 0 0 chr9 90688440 90688483 -51582961 + CT-rich Low_complexity Low_complexity 1 46 -34 2040 119 10 3 chr9 90688483 90688777 -51582667 - AluSx SINE Alu -16 296 1 281 313 0 0 chr9 90688777 90688813 -51582631 + CT-rich Low_complexity Low_complexity 45 80 0 358 257 22 108 chr9 90688852 90688922 -51582522 - L1MCa LINE L1 -4242 2184 2110 1841 165 58 12 chr9 90688922 90689250 -51582194 - MER2 DNA MER2_type -1 343 1 358 257 22 108 chr9 90689250 90689370 -51582074 - L1MCa LINE L1 -4316 2110 2037 1768 166 10 23 chr9 90689370 90689678 -51581766 + AluJb SINE Alu 1 304 -8 358 257 22 108 chr9 90689678 90689848 -51581596 - L1MCa LINE L1 -4389 2037 1854 1203 131 0 6 chr9 90689848 90690024 -51581420 - AluSg/x SINE Alu -8 304 130 4111 172 147 43 chr9 90690024 90690295 -51581149 - L1MCa LINE L1 -4580 1846 1605 1978 101 76 3 chr9 90690295 90690583 -51580861 - AluSx SINE Alu -1 311 3 4111 172 147 43 chr9 90690583 90690740 -51580704 - L1MCa LINE L1 -4821 1605 1466 2415 92 0 0 chr9 90690740 90691045 -51580399 + AluSg SINE Alu 1 305 -5 4111 172 147 43 chr9 90691045 90691740 -51579704 - L1MCa LINE L1 -4960 1466 605 1213 214 121 22 chr9 90691752 90692074 -51579370 - L1MCa LINE L1 -6037 389 36 2442 65 0 10 chr9 90692137 90692443 -51579001 - AluYa5 SINE Alu -8 303 1 2555 48 3 13 chr9 90692582 90692893 -51578551 - AluY SINE Alu -3 308 1 259 222 107 79 chr9 90693380 90693419 -51578025 - L1MEc LINE L1 -3364 2851 2815 1599 138 69 36 chr9 90693419 90693741 -51577703 - AluSx SINE Alu 0 331 1 259 222 107 79 chr9 90693741 90693915 -51577529 - L1MEc LINE L1 -3400 2815 2630 681 247 40 4 chr9 90693931 90694178 -51577266 - L1MEc LINE L1 -3546 2669 2414 696 273 113 60 chr9 90694251 90694309 -51577135 - L1MEc LINE L1 -4769 1627 1574 2326 82 7 3 chr9 90694309 90694603 -51576841 - AluSq SINE Alu -13 300 6 696 273 113 60 chr9 90694603 90695226 -51576218 - L1MEc LINE L1 -4822 1574 910 264 326 34 23 chr9 90695703 90695878 -51575566 - L1MEc LINE L1 -6128 268 92 2139 136 0 0 chr9 90695948 90696242 -51575202 - AluSx SINE Alu -16 296 3 1826 166 13 0 chr9 90696247 90696548 -51574896 - AluJo SINE Alu -7 305 1 258 243 43 0 chr9 90698079 90698149 -51573295 + MER113 DNA MER1_type? 146 218 -303 198 71 0 0 chr9 90699447 90699475 -51571969 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2025 136 0 0 chr9 90699482 90699761 -51571683 - AluSx SINE Alu -33 279 1 812 256 42 5 chr9 90700077 90700268 -51571176 - MIR SINE MIR -62 200 3 191 100 0 50 chr9 90701006 90701046 -51570398 + (TTTCC)n Simple_repeat Simple_repeat 3 40 0 373 294 65 38 chr9 90701227 90701411 -51570033 + MER5A DNA MER1_type 1 189 0 2165 88 39 0 chr9 90701438 90701723 -51569721 - AluSp SINE Alu -14 299 4 21 0 0 0 chr9 90702394 90702415 -51569029 + AT_rich Low_complexity Low_complexity 1 21 0 229 233 27 27 chr9 90702492 90702565 -51568879 - L1MC5 LINE L1 -51 7910 7838 2051 107 32 0 chr9 90703084 90703365 -51568079 + AluSp SINE Alu 2 291 -22 331 233 123 20 chr9 90703373 90703519 -51567925 - L1ME4a LINE L1 -2 6119 5959 1385 152 5 27 chr9 90703596 90703820 -51567624 + AluJo SINE Alu 1 219 -93 406 266 14 14 chr9 90703972 90704111 -51567333 - L1ME4a LINE L1 -439 5682 5544 1868 122 11 7 chr9 90705176 90705454 -51565990 + AluSx SINE Alu 30 308 -4 1635 197 78 9 chr9 90706563 90706939 -51564505 - MLT2D LTR ERVL -16 448 1 703 272 146 32 chr9 90707578 90707983 -51563461 - HAL1b LINE L1 -620 728 278 1757 187 178 36 chr9 90708341 90708790 -51562654 - MLT2B1 LTR ERVL -7 513 1 558 82 0 71 chr9 90712140 90712225 -51559219 - MADE1 DNA Mariner 0 80 2 574 275 27 0 chr9 90712379 90712528 -51558916 + Charlie1 DNA MER1_type 1 153 -2608 578 148 30 10 chr9 90712534 90712635 -51558809 + Charlie1 DNA MER1_type 2082 2184 -577 4949 142 23 56 chr9 90712645 90713587 -51557857 - L1MB2 LINE L1 0 6171 5261 1367 199 131 52 chr9 90713587 90714066 -51557378 + Charlie1 DNA MER1_type 2186 2713 -48 1704 176 14 3 chr9 90714066 90714356 -51557088 - AluJo SINE Alu -19 293 1 1367 199 131 52 chr9 90714356 90714410 -51557034 + Charlie1 DNA MER1_type 2713 2761 0 1698 146 7 7 chr9 90714629 90714931 -51556513 - AluJb SINE Alu 0 308 7 234 0 0 0 chr9 90714941 90714967 -51556477 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 194 288 144 52 chr9 90715186 90715339 -51556105 - L2 LINE L2 -43 3270 3104 230 331 118 27 chr9 90715425 90715688 -51555756 - L2 LINE L2 -385 2929 2643 613 191 40 8 chr9 90715790 90715916 -51555528 + L1MD3 LINE L1 7848 7977 -18 324 285 111 7 chr9 90716797 90716941 -51554503 - L1MC5 LINE L1 -74 7887 7729 1368 173 105 26 chr9 90716952 90717218 -51554226 - MER1B DNA MER1_type 0 339 53 1543 157 3 77 chr9 90717418 90717730 -51553714 - AluSx SINE Alu -19 293 5 4088 191 40 36 chr9 90717738 90718502 -51552942 - L1MB8 LINE L1 -35 6143 5383 2062 127 3 0 chr9 90718502 90718794 -51552650 - AluSx SINE Alu -19 293 1 4088 191 40 36 chr9 90718794 90719289 -51552155 - L1MB8 LINE L1 -795 5383 4891 2306 84 27 0 chr9 90719289 90719585 -51551859 + AluSg SINE Alu 7 310 0 4088 191 40 36 chr9 90719585 90719729 -51551715 - L1MB8 LINE L1 -1287 4891 4749 1565 159 126 4 chr9 90719729 90720000 -51551444 - AluSx SINE Alu -8 304 1 4088 191 40 36 chr9 90720000 90720192 -51551252 - L1MB8 LINE L1 -1429 4749 4525 1307 111 10 5 chr9 90720192 90720390 -51551054 - AluSx SINE Alu -69 243 45 2071 131 7 0 chr9 90720392 90720689 -51550755 - AluSc SINE Alu -10 299 1 369 160 0 68 chr9 90720692 90720795 -51550649 - L1MB8 LINE L1 -1706 4440 4345 2384 90 0 0 chr9 90721011 90721310 -51550134 + AluSq SINE Alu 1 299 -14 287 281 114 18 chr9 90721970 90722084 -51549360 + MER94 DNA DNA 10 134 0 324 234 72 36 chr9 90722264 90722375 -51549069 - MER5B DNA MER1_type -17 161 47 910 184 18 18 chr9 90722671 90722839 -51548605 + MER58B DNA MER1_type 174 341 0 21 57 0 0 chr9 90722863 90722898 -51548546 + AT_rich Low_complexity Low_complexity 1 35 0 216 158 0 0 chr9 90722933 90722971 -51548473 + T-rich Low_complexity Low_complexity 1 38 0 267 298 12 0 chr9 90723557 90723658 -51547786 + (TA)n Simple_repeat Simple_repeat 1 102 0 183 80 0 0 chr9 90725363 90725388 -51546056 + (ATG)n Simple_repeat Simple_repeat 3 27 0 26 0 0 0 chr9 90726430 90726456 -51544988 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr9 90726846 90726879 -51544565 + AT_rich Low_complexity Low_complexity 1 33 0 451 105 40 0 chr9 90727018 90727094 -51544350 + MADE1 DNA Mariner 2 80 0 517 90 0 0 chr9 90728130 90728197 -51543247 + L1PA7 LINE L1 6068 6134 -20 1018 113 0 7 chr9 90728362 90728504 -51542940 - AluJb SINE Alu -171 141 1 2299 91 0 35 chr9 90729204 90729523 -51541921 + AluSg SINE Alu 1 308 -2 745 199 0 0 chr9 90730144 90730275 -51541169 - FLAM_C SINE Alu -1 132 2 2091 122 21 0 chr9 90730512 90730799 -51540645 - AluSx SINE Alu -17 295 3 2323 90 3 7 chr9 90731229 90731529 -51539915 + AluSx SINE Alu 1 299 -13 2228 108 3 3 chr9 90731886 90732191 -51539253 + AluSx SINE Alu 1 305 -7 1343 179 101 4 chr9 90732267 90732524 -51538920 - AluJo SINE Alu -30 282 1 1923 124 48 10 chr9 90733424 90733715 -51537729 + AluSx SINE Alu 1 302 -10 2489 74 3 0 chr9 90734048 90734346 -51537098 - AluSp SINE Alu -14 299 1 2183 88 16 23 chr9 90734420 90734725 -51536719 - AluSq SINE Alu -10 303 1 2414 76 17 0 chr9 90736710 90737011 -51534433 - AluSg SINE Alu -4 306 1 293 194 83 0 chr9 90737318 90737390 -51534054 - LTR54 LTR ERV1 -5 505 428 * 658 256 84 37 chr9 90737365 90737623 -51533821 - MER57A LTR ERV1 -56 347 106 1569 164 65 36 chr9 90737623 90737880 -51533564 - MER7A DNA MER2_type -2694 344 75 2523 88 0 0 chr9 90737880 90738187 -51533257 - AluSg SINE Alu -3 307 1 1569 164 65 36 chr9 90738187 90738265 -51533179 - MER7A DNA MER2_type -2963 75 1 658 256 84 37 chr9 90738265 90738360 -51533084 - MER57A LTR ERV1 -297 106 17 200 239 268 0 chr9 90738428 90738499 -51532945 + MER5A DNA MER1_type 57 146 -43 1203 142 71 1 chr9 90738827 90739093 -51532351 + MER2 DNA MER2_type 1 321 -24 4928 202 144 45 chr9 90739318 90739696 -51531748 + L1MB7 LINE L1 3544 3883 -2301 2458 86 0 0 chr9 90739696 90739997 -51531447 + AluSx SINE Alu 1 301 -11 4928 202 144 45 chr9 90739997 90740402 -51531042 + L1MB7 LINE L1 3883 4247 -1937 2193 110 0 0 chr9 90740402 90740692 -51530752 + AluSg SINE Alu 1 290 -20 4928 202 144 45 chr9 90740692 90741371 -51530073 + L1MB7 LINE L1 4247 4857 -1327 2053 106 10 13 chr9 90741371 90741672 -51529772 + AluSg SINE Alu 6 305 -5 4928 202 144 45 chr9 90741672 90742598 -51528846 + L1MB7 LINE L1 4857 6174 -10 183 200 38 88 chr9 90742647 90742683 -51528761 - MER5A DNA MER1_type -80 109 73 2046 146 0 0 chr9 90742683 90742985 -51528459 - AluSx SINE Alu -10 302 1 183 200 38 88 chr9 90742985 90743028 -51528416 - MER5A DNA MER1_type -116 73 34 2131 108 10 23 chr9 90743854 90744160 -51527284 + AluSq SINE Alu 1 302 -11 1408 109 94 0 chr9 90744160 90744361 -51527083 + AluSq SINE Alu 77 296 -17 2336 103 3 0 chr9 90746123 90746424 -51525020 + AluSp SINE Alu 2 303 -10 720 239 30 30 chr9 90747217 90747354 -51524090 + MER3 DNA MER1_type 13 152 -57 2301 95 0 0 chr9 90747354 90747648 -51523796 + AluY SINE Alu 1 294 -17 720 239 30 30 chr9 90747648 90747707 -51523737 + MER3 DNA MER1_type 151 209 0 1641 189 3 24 chr9 90748091 90748388 -51523056 + AluJo SINE Alu 2 292 -20 333 240 151 14 chr9 90748443 90748589 -51522855 - MIR SINE MIR -24 238 73 2289 114 3 0 chr9 90748656 90748963 -51522481 - AluSp SINE Alu -5 308 1 2867 195 67 51 chr9 90749057 90749183 -51522261 + L1MB7 LINE L1 5442 5564 -620 1889 143 23 16 chr9 90749183 90749491 -51521953 + AluJb SINE Alu 2 311 -1 2867 195 67 51 chr9 90749491 90749783 -51521661 + L1MB7 LINE L1 5564 5850 -334 2264 107 0 13 chr9 90749783 90750083 -51521361 + AluSx SINE Alu 1 296 -16 2867 195 67 51 chr9 90750083 90750375 -51521069 + L1MB7 LINE L1 5850 6165 -19 650 243 126 23 chr9 90750863 90751164 -51520280 - LTR65 LTR ERV1 -30 639 308 335 140 78 22 chr9 90752200 90752606 -51518838 + (TG)n Simple_repeat Simple_repeat 1 428 0 770 248 81 0 chr9 90753200 90753491 -51517953 + MER33 DNA MER1_type 1 310 -14 2152 112 3 0 chr9 90754044 90754356 -51517088 + AluSq SINE Alu 1 313 0 400 279 108 13 chr9 90754393 90754551 -51516893 - L1MC/D LINE L1 -2039 5769 5597 2104 122 0 0 chr9 90754551 90754837 -51516607 - AluSx SINE Alu -26 286 1 183 42 0 0 chr9 90755300 90755324 -51516120 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2236 118 0 7 chr9 90755338 90755642 -51515802 + AluSx SINE Alu 1 302 -10 2328 114 0 3 chr9 90755959 90756267 -51515177 + AluSx SINE Alu 1 307 -5 323 266 187 37 chr9 90756906 90757147 -51514297 + L1MC5 LINE L1 7507 7783 -178 707 160 0 90 chr9 90757155 90757299 -51514145 + FLAM_A SINE Alu 12 142 0 2403 103 0 0 chr9 90757849 90758159 -51513285 + AluSg SINE Alu 1 310 0 247 284 35 0 chr9 90758177 90758318 -51513126 + L1M4 LINE L1 2475 2620 -3526 1777 191 143 26 chr9 90758456 90758947 -51512497 + LTR10A LTR ERV1 1 548 -61 361 315 34 40 chr9 90759064 90759352 -51512092 + L1M4 LINE L1 3340 3627 -2519 2812 156 39 118 chr9 90759352 90759417 -51512027 - LTR8 LTR ERV1 0 691 622 2265 78 0 24 chr9 90759417 90759731 -51511713 - AluY SINE Alu 0 311 1 2812 156 39 118 chr9 90759731 90760414 -51511030 - LTR8 LTR ERV1 -69 622 2 361 315 34 40 chr9 90760414 90760452 -51510992 + L1M4 LINE L1 3627 3664 -2482 855 86 0 0 chr9 90760904 90761009 -51510435 + AluSx SINE Alu 1 105 -208 1976 185 68 34 chr9 90761009 90761453 -51509991 - LTR2B LTR ERV1 0 490 32 1679 99 0 0 chr9 90761470 90761683 -51509761 + AluSx SINE Alu 100 312 0 478 243 14 35 chr9 90761692 90761836 -51509608 + L1MC4a LINE L1 6538 6678 -1130 1511 91 0 0 chr9 90761839 90762037 -51509407 + MER41A LTR ERV1 1 198 -356 2150 92 102 10 chr9 90762037 90762405 -51509039 - LTR7 LTR ERV1 0 450 1 * 2693 78 5 37 chr9 90762405 90762634 -51508810 + MER41A LTR ERV1 194 408 -146 2229 112 16 0 chr9 90762634 90762937 -51508507 - AluSq SINE Alu -5 308 1 2693 78 5 37 chr9 90762937 90763080 -51508364 + MER41A LTR ERV1 408 554 0 1042 200 83 154 chr9 90763096 90763238 -51508206 + L1MC5 LINE L1 6697 6848 -1113 2131 107 0 4 chr9 90763238 90763556 -51507888 - AluSg SINE Alu 0 317 1 1042 200 83 154 chr9 90763556 90764109 -51507335 + L1MC5 LINE L1 6848 7317 -644 2271 82 6 25 chr9 90764109 90764424 -51507020 - AluSp SINE Alu -4 309 1 1042 200 83 154 chr9 90764424 90764628 -51506816 + L1MC5 LINE L1 7317 7534 -427 561 68 0 0 chr9 90764635 90764709 -51506735 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 921 152 35 0 chr9 90764709 90764854 -51506590 - AluSx SINE Alu -27 285 136 508 151 0 0 chr9 90764854 90764927 -51506517 - AluSx SINE Alu -226 86 14 6354 53 8 0 chr9 90764943 90765717 -51505727 - L1PA7 LINE L1 -1 6153 5374 354 109 20 79 chr9 90765874 90765975 -51505469 + L1MC5 LINE L1 7636 7730 -231 1857 114 6 111 chr9 90766010 90766188 -51505256 - AluSx SINE Alu -4 308 113 180 0 0 0 chr9 90766188 90766208 -51505236 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2254 81 3 11 chr9 90766211 90766494 -51504950 - AluSp SINE Alu -32 281 1 1857 114 6 111 chr9 90766494 90766654 -51504790 - AluSx SINE Alu -201 111 2 1855 147 41 9 chr9 90766655 90766974 -51504470 - MER7A DNA MER2_type -19 327 1 3092 153 79 56 chr9 90767452 90767983 -51503461 + LTR8A LTR ERV1 1 518 -209 2382 92 0 9 chr9 90767983 90768299 -51503145 + AluSq SINE Alu 1 313 0 3092 153 79 56 chr9 90768299 90768322 -51503122 + LTR8A LTR ERV1 518 539 -188 1760 124 86 21 chr9 90768322 90768613 -51502831 + AluSg SINE Alu 1 310 0 3092 153 79 56 chr9 90768613 90768751 -51502693 + LTR8A LTR ERV1 539 710 -17 2143 107 14 7 chr9 90769604 90769894 -51501550 + AluSc SINE Alu 1 292 -17 268 31 0 0 chr9 90770611 90770643 -51500801 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2363 70 0 7 chr9 90770643 90770927 -51500517 - AluSq SINE Alu -1 313 1 300 287 67 33 chr9 90771158 90771308 -51500136 + L1ME3 LINE L1 6005 6159 -3 2428 94 0 0 chr9 90771819 90772128 -51499316 - AluSx SINE Alu -3 309 1 2208 63 42 11 chr9 90772391 90772675 -51498769 + AluY SINE Alu 1 293 -18 320 258 41 0 chr9 90773149 90773246 -51498198 + (CA)n Simple_repeat Simple_repeat 2 102 0 762 165 8 23 chr9 90773277 90773410 -51498034 - FLAM_C SINE Alu 0 133 3 2334 103 3 0 chr9 90773790 90774081 -51497363 - AluSc SINE Alu -15 294 3 1678 183 139 12 chr9 90774508 90774919 -51496525 + MLT1C LTR MaLR 1 463 -4 1041 251 54 69 chr9 90774969 90775072 -51496372 + MER45C DNA AcHobo 1 104 -849 2106 116 0 7 chr9 90775072 90775391 -51496053 + AluSx SINE Alu 1 317 0 1041 251 54 69 chr9 90775391 90775709 -51495735 + MER45C DNA AcHobo 104 417 -536 1252 177 79 26 chr9 90775716 90775982 -51495462 + MER45C DNA AcHobo 674 953 0 960 210 201 24 chr9 90776724 90777052 -51494392 - MER31B LTR ERV1 -79 387 2 1587 170 14 7 chr9 90777800 90778088 -51493356 + MER49 LTR ERV1 1 290 -633 1350 234 14 20 chr9 90778127 90778478 -51492966 + MER4D LTR ERV1 555 903 0 576 170 178 22 chr9 90778501 90778636 -51492808 - MER45C DNA AcHobo -36 917 762 738 301 39 39 chr9 90778698 90778876 -51492568 - MER45C DNA AcHobo -543 410 230 2116 131 7 3 chr9 90778876 90779182 -51492262 + AluSx SINE Alu 1 307 -5 738 301 39 39 chr9 90779182 90779312 -51492132 - MER45C DNA AcHobo -722 231 102 2423 78 3 0 chr9 90779313 90779608 -51491836 + AluSg SINE Alu 1 296 -14 1158 176 57 0 chr9 90779610 90779648 -51491796 + AluJo SINE Alu 84 118 -194 189 74 0 0 chr9 90779648 90779675 -51491769 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1158 176 57 0 chr9 90779675 90779846 -51491598 + AluJo SINE Alu 118 305 -7 232 193 193 12 chr9 90779846 90779929 -51491515 - MER45C DNA AcHobo -855 98 1 2316 76 0 0 chr9 90780522 90780798 -51490646 + AluSq SINE Alu 10 285 -28 183 100 0 0 chr9 90780807 90780837 -51490607 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 344 262 93 60 chr9 90781006 90781297 -51490147 - LTR48B LTR ERV1 -2 785 383 542 227 14 17 chr9 90781372 90781499 -51489945 - MER34 LTR ERV1 -433 109 1 856 130 11 34 chr9 90781499 90781676 -51489768 + MER96B DNA MER1_type? 245 417 0 249 316 0 13 chr9 90781676 90781752 -51489692 + L2 LINE L2 3213 3287 -26 230 286 0 0 chr9 90782101 90782195 -51489249 + GA-rich Low_complexity Low_complexity 1 94 0 333 273 19 37 chr9 90782281 90782442 -51489002 + G-rich Low_complexity Low_complexity 1 158 0 298 257 0 57 chr9 90782464 90782604 -51488840 + G-rich Low_complexity Low_complexity 6 137 0 351 215 0 105 chr9 90782713 90782913 -51488531 + G-rich Low_complexity Low_complexity 1 179 0 22 0 0 0 chr9 90783652 90783674 -51487770 + GC_rich Low_complexity Low_complexity 1 22 0 239 266 11 32 chr9 90783903 90783997 -51487447 - MER5A DNA MER1_type -97 92 1 195 163 50 0 chr9 90785097 90785143 -51486301 - MIR SINE MIR -49 159 111 710 213 104 27 chr9 90786665 90786848 -51484596 - MIR SINE MIR 0 262 66 337 197 79 0 chr9 90787074 90787150 -51484294 - MER5A DNA MER1_type -97 92 11 200 243 122 27 chr9 90787157 90787231 -51484213 + MER5C DNA MER1_type 1 81 -108 2254 115 16 0 chr9 90787578 90787883 -51483561 - AluSq SINE Alu -3 310 1 230 247 52 13 chr9 90788161 90788238 -51483206 + GA-rich Low_complexity Low_complexity 4 83 0 2372 84 3 0 chr9 90788581 90788877 -51482567 + AluY SINE Alu 1 297 -14 1299 183 5 0 chr9 90789465 90789684 -51481760 - AluJo SINE Alu -2 310 91 626 310 52 69 chr9 90789741 90789799 -51481645 - L1M4 LINE L1 -2855 3291 3234 1890 173 0 0 chr9 90789799 90790088 -51481356 - AluJo SINE Alu -21 291 3 626 310 52 69 chr9 90790088 90790452 -51480992 - L1M4 LINE L1 -2912 3234 2876 2560 67 0 10 chr9 90790478 90790790 -51480654 + AluY SINE Alu 1 309 -2 2271 109 0 7 chr9 90790916 90791218 -51480226 - AluSg SINE Alu -10 300 1 350 359 22 28 chr9 90791228 90791409 -51480035 - L1M4 LINE L1 -3317 2829 2650 1884 166 24 0 chr9 90791900 90792195 -51479249 - AluJb SINE Alu -10 302 1 839 200 24 0 chr9 90792293 90792458 -51478986 - MER3 DNA MER1_type 0 209 41 2360 112 0 3 chr9 90792517 90792829 -51478615 + AluSq SINE Alu 1 311 -2 2558 73 0 0 chr9 90794393 90794696 -51476748 - AluSq SINE Alu -10 303 1 261 0 0 0 chr9 90794778 90794807 -51476637 + (TG)n Simple_repeat Simple_repeat 1 29 0 2184 109 16 0 chr9 90795041 90795344 -51476100 - AluSx SINE Alu -4 308 1 180 161 48 0 chr9 90796034 90796096 -51475348 + (CA)n Simple_repeat Simple_repeat 2 66 0 2338 108 3 3 chr9 90796364 90796671 -51474773 + AluSq SINE Alu 1 307 -6 2545 93 0 0 chr9 90796686 90796999 -51474445 + AluSq SINE Alu 1 313 0 1986 103 16 78 chr9 90797011 90797331 -51474113 + AluY SINE Alu 1 300 -11 1935 279 111 41 chr9 90797373 90797384 -51474060 - HAL1 LINE L1 -492 2015 2006 1677 193 45 22 chr9 90797384 90797741 -51473703 + MLT1A1 LTR MaLR 1 365 0 1935 279 111 41 chr9 90797741 90798260 -51473184 - HAL1 LINE L1 -501 2006 1524 2498 122 89 27 chr9 90798260 90798464 -51472980 - MSTA LTR MaLR 0 428 238 1886 124 57 7 chr9 90798464 90798747 -51472697 - AluSp SINE Alu -16 297 1 2498 122 89 27 chr9 90798747 90798945 -51472499 - MSTA LTR MaLR -190 238 1 4080 163 57 21 chr9 90798945 90799700 -51471744 - LTR39 LTR ERV1 -1 782 1 1935 279 111 41 chr9 90799700 90800497 -51470947 - HAL1 LINE L1 -982 1525 594 421 320 91 14 chr9 90800694 90800969 -51470475 - HAL1 LINE L1 -2194 313 18 2508 58 10 0 chr9 90801103 90801396 -51470048 - AluY SINE Alu -13 298 3 1199 116 0 0 chr9 90801827 90801982 -51469462 + AluSp SINE Alu 135 289 -24 207 0 0 0 chr9 90801987 90802010 -51469434 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2233 124 3 0 chr9 90802826 90803132 -51468312 - AluSx SINE Alu -3 309 3 1624 98 47 18 chr9 90803430 90803700 -51467744 + LTR24B LTR ERV1 1 278 -298 2266 187 39 23 chr9 90803700 90804202 -51467242 - MER41B LTR ERV1 0 597 130 345 107 18 0 chr9 90804230 90804286 -51467158 + LTR24B LTR ERV1 274 330 -246 2469 218 102 84 chr9 90804294 90805363 -51466081 - MER52A LTR ERV1 -8 1747 660 1288 156 4 55 chr9 90805366 90805424 -51466020 + LTR24B LTR ERV1 332 391 -185 2250 108 0 16 chr9 90805424 90805738 -51465706 + AluY SINE Alu 1 309 -2 1288 156 4 55 chr9 90805738 90805935 -51465509 + LTR24B LTR ERV1 391 574 -2 4251 177 40 47 chr9 90806601 90807469 -51463975 + MER21B LTR ERV1 1 862 -1 227 262 134 60 chr9 90808665 90808814 -51462630 - L3b LINE CR1 -139 1444 1285 635 181 14 51 chr9 90809252 90809390 -51462054 + FLAM_A SINE Alu 1 133 0 2890 72 69 44 chr9 90809646 90810040 -51461404 + MLT2A1 LTR ERVL 1 408 -36 527 71 41 0 chr9 90810040 90810138 -51461306 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 2890 72 69 44 chr9 90810138 90810176 -51461268 + MLT2A1 LTR ERVL 408 444 0 1754 257 68 31 chr9 90810401 90811047 -51460397 + L1ME3A LINE L1 5451 6120 -50 2185 102 35 0 chr9 90811109 90811394 -51460050 + AluSx SINE Alu 1 295 -17 2277 86 0 0 chr9 90811463 90811742 -51459702 + AluSc SINE Alu 27 305 -4 230 337 240 0 chr9 90812002 90812364 -51459080 + L2 LINE L2 2427 2875 -439 2392 98 0 0 chr9 90812558 90812853 -51458591 + AluSq SINE Alu 1 295 -18 303 281 75 85 chr9 90812873 90813045 -51458399 - L1MEd LINE L1 -5008 1111 942 2316 100 3 0 chr9 90813045 90813345 -51458099 - AluSp SINE Alu -12 301 1 303 281 75 85 chr9 90813345 90813453 -51457991 - L1MEd LINE L1 -5177 942 834 5098 145 14 31 chr9 90813486 90814156 -51457288 - L1MB1 LINE L1 -1 6167 5487 2063 136 3 16 chr9 90814156 90814466 -51456978 - AluSx SINE Alu -6 306 1 5098 145 14 31 chr9 90814466 90814921 -51456523 - L1MB1 LINE L1 -681 5487 5065 2216 116 0 26 chr9 90814921 90815232 -51456212 - AluSx SINE Alu -9 303 1 5098 145 14 31 chr9 90815232 90815393 -51456051 - L1MB1 LINE L1 -1103 5065 4903 544 138 0 46 chr9 90815384 90815501 -51455943 - L1MB1 LINE L1 -1654 4492 4380 * 721 27 40 40 chr9 90815501 90815651 -51455793 + (TCTA)n Simple_repeat Simple_repeat 1 150 0 544 138 0 46 chr9 90815651 90815663 -51455781 - L1MB1 LINE L1 -1766 4380 4369 208 286 238 29 chr9 90815664 90815769 -51455675 + L2 LINE L2 3186 3312 -1 2069 127 7 0 chr9 90815769 90816060 -51455384 - AluSg SINE Alu -15 295 3 330 313 141 8 chr9 90816066 90816194 -51455250 - L1MC/D LINE L1 -1987 5821 5677 234 0 0 0 chr9 90817189 90817215 -51454229 + (TG)n Simple_repeat Simple_repeat 2 27 0 846 225 50 35 chr9 90817264 90817602 -51453842 - L1MC5 LINE L1 -105 7856 7514 1007 291 86 12 chr9 90817618 90818027 -51453417 + LTR16A LTR ERVL 12 450 0 2404 86 0 7 chr9 91019040 91019341 -51252103 + AluSx SINE Alu 1 299 -13 778 215 84 19 chr9 91020895 91021271 -51250173 - Charlie4a DNA MER1_type -45 463 54 194 284 60 0 chr9 91021337 91021404 -51250040 + L2 LINE L2 3201 3271 -1 269 217 22 54 chr9 91021965 91022057 -51249387 - MLT1J LTR MaLR -44 467 379 705 238 31 5 chr9 91022154 91022347 -51249097 - MLT1J LTR MaLR -299 212 15 1974 246 78 14 chr9 91022408 91023024 -51248420 + L1ME3 LINE L1 5453 6117 -45 2928 10 0 0 chr9 91023024 91023333 -51248111 + AluYa5 SINE Alu 1 309 -2 1974 246 78 14 chr9 91023333 91023382 -51248062 + L1ME3 LINE L1 6117 6161 -1 292 273 55 47 chr9 91025181 91025309 -51246135 - HAL1 LINE L1 -149 2358 2230 3257 110 76 63 chr9 91025318 91025375 -51246069 - MER4B LTR ERV1 0 610 555 2146 104 31 0 chr9 91025375 91025662 -51245782 + AluSx SINE Alu 1 296 -16 3257 110 76 63 chr9 91025662 91026206 -51245238 - MER4B LTR ERV1 -55 555 1 1342 194 13 8 chr9 91026234 91026471 -51244973 + MER8 DNA MER2_type 2 239 0 1753 185 113 66 chr9 91026584 91027081 -51244363 - MLT2B1 LTR ERVL 0 520 1 328 269 56 0 chr9 91027696 91027804 -51243640 - HAL1 LINE L1 -722 1785 1672 1218 254 145 48 chr9 91027834 91027994 -51243450 - HAL1 LINE L1 -956 1551 1408 1468 80 27 0 chr9 91027994 91028182 -51243262 - AluY SINE Alu 0 311 119 1218 254 145 48 chr9 91028182 91028341 -51243103 - HAL1 LINE L1 -1099 1408 1266 1941 163 3 0 chr9 91028341 91028635 -51242809 - AluJo SINE Alu -17 295 1 1218 254 145 48 chr9 91028635 91029206 -51242238 - HAL1 LINE L1 -1241 1266 574 472 235 117 75 chr9 91029292 91029573 -51241871 - HAL1 LINE L1 -2096 411 119 231 266 96 0 chr9 91029612 91029706 -51241738 - L1MC4 LINE L1 -15 8027 7925 369 361 71 20 chr9 91029821 91030073 -51241371 - HAL1 LINE L1 -1470 1037 773 1261 194 33 111 chr9 91030074 91030470 -51240974 + MLT1A1 LTR MaLR 1 365 0 685 267 29 29 chr9 91030712 91030985 -51240459 + MLT2F LTR ERVL 111 383 -280 1907 174 0 0 chr9 91033525 91033829 -51237615 - AluJo SINE Alu -8 304 1 39 38 0 0 chr9 91035037 91035090 -51236354 + AT_rich Low_complexity Low_complexity 1 53 0 4610 145 19 36 chr9 91035091 91035328 -51236116 - L1PA15 LINE L1 -1 6164 5924 333 0 0 0 chr9 91035328 91035365 -51236079 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1462 222 0 0 chr9 91035365 91035631 -51235813 - AluJb SINE Alu -32 280 15 4610 145 19 36 chr9 91035631 91036214 -51235230 - L1PA15 LINE L1 -239 5926 5357 216 0 0 0 chr9 91036234 91036258 -51235186 + (T)n Simple_repeat Simple_repeat 1 24 0 595 236 68 70 chr9 91037444 91037870 -51233574 + MLT1F LTR MaLR 125 516 -26 1014 204 0 23 chr9 91037882 91038098 -51233346 + L1M4 LINE L1 621 831 -5711 2377 171 70 57 chr9 91038098 91038137 -51233307 - MLT2B1 LTR ERVL 0 520 483 504 0 0 0 chr9 91038137 91038193 -51233251 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 2377 171 70 57 chr9 91038193 91038519 -51232925 - MLT2B1 LTR ERVL -37 483 144 1548 202 116 19 chr9 91038519 91038880 -51232564 - MSTD LTR MaLR 0 396 1 2377 171 70 57 chr9 91038880 91039026 -51232418 - MLT2B1 LTR ERVL -376 144 1 1785 189 121 34 chr9 91039027 91039153 -51232291 + L1M4 LINE L1 828 942 -5625 186 43 0 0 chr9 91039153 91039176 -51232268 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1785 189 121 34 chr9 91039176 91039271 -51232173 + L1M4 LINE L1 942 1027 -5540 2498 80 0 10 chr9 91039271 91039584 -51231860 + AluY SINE Alu 1 310 -1 1785 189 121 34 chr9 91039584 91039704 -51231740 + L1M4 LINE L1 1027 1135 -5432 1509 131 87 51 chr9 91039704 91039979 -51231465 + AluJo SINE Alu 23 307 -5 225 0 0 0 chr9 91039980 91040005 -51231439 + (TA)n Simple_repeat Simple_repeat 2 26 0 1785 189 121 34 chr9 91040005 91040095 -51231349 + L1M4 LINE L1 1135 1216 -5351 2189 127 7 0 chr9 91040095 91040394 -51231050 + AluSx SINE Alu 1 301 -11 1785 189 121 34 chr9 91040394 91040448 -51230996 + L1M4 LINE L1 1216 1349 -5218 200 233 23 0 chr9 91040623 91040666 -51230778 + L2 LINE L2 3221 3264 -8 253 221 35 23 chr9 91041962 91042048 -51229396 + MLT1J LTR MaLR 230 316 -195 427 227 284 26 chr9 91042671 91042900 -51228544 + MLT1G LTR MaLR 2 289 -301 553 185 23 3 chr9 91042929 91043277 -51228167 + GA-rich Low_complexity Low_complexity 1 355 0 1747 207 157 26 chr9 91045336 91045834 -51225610 - MLT1E LTR MaLR -23 570 8 22 0 0 0 chr9 91045848 91045870 -51225574 + AT_rich Low_complexity Low_complexity 1 22 0 343 304 125 43 chr9 91045947 91046315 -51225129 + MLT1J2 LTR MaLR 53 450 0 1351 210 48 13 chr9 91046432 91046861 -51224583 - MLT1F LTR MaLR -18 524 37 282 287 65 0 chr9 91047566 91047674 -51223770 + Charlie7 DNA MER1_type 374 488 -2124 256 250 67 0 chr9 91047710 91047814 -51223630 + Charlie7 DNA MER1_type 590 700 -1912 3487 129 28 7 chr9 91047833 91048413 -51223031 - L1MA6 LINE L1 0 6300 5709 264 146 130 41 chr9 91048436 91048559 -51222885 + Charlie7 DNA MER1_type 2415 2548 -64 813 99 0 0 chr9 91048954 91049055 -51222389 + AluSx SINE Alu 1 101 -212 3044 89 7 24 chr9 91049057 91049508 -51221936 - LTR22A LTR ERVK 0 458 16 1484 120 9 21 chr9 91049508 91049741 -51221703 + AluSx SINE Alu 81 310 0 438 139 23 12 chr9 91050412 91050498 -51220946 - MER53 DNA DNA -80 109 23 391 182 45 0 chr9 91050420 91050508 -51220936 + MER53 DNA DNA 96 187 -2 * 287 327 106 0 chr9 91050520 91050624 -51220820 + MIR SINE MIR 50 164 -98 1862 187 111 87 chr9 91051077 91051618 -51219826 + MLT2B3 LTR ERVL 1 554 0 324 0 0 0 chr9 91052325 91052361 -51219083 + (CA)n Simple_repeat Simple_repeat 1 36 0 561 84 60 0 chr9 91052463 91052546 -51218898 - MER72 LTR ERV1 -634 88 1 906 249 159 29 chr9 91052546 91053023 -51218421 - L1M4 LINE L1 -2199 3947 3409 2165 116 3 23 chr9 91053038 91053340 -51218104 - AluSg SINE Alu -13 297 2 372 346 111 0 chr9 91053405 91053648 -51217796 - MLT1E LTR MaLR -267 326 57 576 265 130 15 chr9 91054975 91055175 -51216269 - MIR SINE MIR 0 262 40 428 254 199 57 chr9 91055732 91056098 -51215346 + L2 LINE L2 2454 2871 -443 197 291 73 18 chr9 91056285 91056395 -51215049 + L2 LINE L2 3156 3271 -1 513 318 71 5 chr9 91056853 91057051 -51214393 + MIR SINE MIR 47 257 -5 930 302 24 46 chr9 91057489 91057557 -51213887 - L1ME LINE L1 -413 5751 5683 252 0 0 0 chr9 91057557 91057585 -51213859 + (TG)n Simple_repeat Simple_repeat 1 28 0 930 302 24 46 chr9 91057585 91058013 -51213431 - L1ME LINE L1 -481 5683 5266 321 253 0 36 chr9 91058019 91058092 -51213352 - L1MC4 LINE L1 -1339 6703 6632 2220 111 0 3 chr9 91058092 91058389 -51213055 - AluSg SINE Alu -14 296 1 2565 255 40 3 chr9 91058421 91059048 -51212396 - MER82 DNA MER2_type -1 652 3 312 263 17 8 chr9 91059109 91059227 -51212217 - L1ME LINE L1 -922 5224 5106 405 219 34 0 chr9 91059244 91059363 -51212081 - L1ME LINE L1 -1095 5051 4929 1747 161 30 22 chr9 91059436 91059778 -51211666 - MLT1A1 LTR MaLR -11 354 11 507 290 74 81 chr9 91060173 91060632 -51210812 - L2 LINE L2 0 3313 2858 660 255 98 0 chr9 91060694 91060878 -51210566 + MER3 DNA MER1_type 1 202 -7 2101 157 0 0 chr9 91061353 91061665 -51209779 + AluJb SINE Alu 1 312 0 609 245 28 7 chr9 91061844 91062012 -51209432 - L1ME1 LINE L1 -294 5872 5703 2457 67 0 3 chr9 91062236 91062533 -51208911 + AluSc SINE Alu 1 296 -13 470 262 87 0 chr9 91062720 91062846 -51208598 - MER3 DNA MER1_type 0 209 73 627 168 270 22 chr9 91064319 91064545 -51206899 - MER4C LTR ERV1 -19 446 165 1448 174 52 47 chr9 91064572 91064916 -51206528 - MER4A LTR ERV1 -318 346 1 2364 91 3 0 chr9 91065977 91066275 -51205169 + AluSq SINE Alu 1 299 -14 431 274 14 7 chr9 91066281 91066427 -51205017 - Charlie2 DNA MER1_type -9 2853 2707 279 0 0 0 chr9 91066463 91066494 -51204950 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1518 219 0 3 chr9 91066499 91066782 -51204662 - AluJo SINE Alu -30 282 1 1757 197 42 64 chr9 91067005 91067477 -51203967 + MLT1C LTR MaLR 6 467 0 1025 254 50 53 chr9 91067497 91067690 -51203754 - Charlie2 DNA MER1_type -427 2435 2243 2013 129 4 0 chr9 91067690 91068005 -51203439 - AluSc SINE Alu 0 316 1 1025 254 50 53 chr9 91068005 91068126 -51203318 - Charlie2 DNA MER1_type -619 2243 2123 234 62 0 0 chr9 91068126 91068158 -51203286 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 1025 254 50 53 chr9 91068158 91068420 -51203024 - Charlie2 DNA MER1_type -739 2123 1859 1632 265 83 36 chr9 91068422 91069037 -51202407 - L1MEd LINE L1 -5226 893 250 2612 114 22 3 chr9 91069315 91069683 -51201761 + THE1C LTR MaLR 1 375 0 591 195 85 8 chr9 91070514 91070632 -51200812 + FLAM_A SINE Alu 1 127 -6 2611 57 0 0 chr9 91071420 91071721 -51199723 + AluY SINE Alu 1 301 -10 299 114 23 0 chr9 91072347 91072391 -51199053 + Alu SINE Alu 1 45 -257 472 316 102 38 chr9 91072400 91072742 -51198702 + HAL1 LINE L1 803 1166 -1341 977 110 0 98 chr9 91072743 91072907 -51198537 + AluJo SINE Alu 3 150 -162 539 222 0 0 chr9 91072907 91073006 -51198438 + AluSg/x SINE Alu 208 306 -3 939 277 95 43 chr9 91073012 91073158 -51198286 + HAL1 LINE L1 1169 1306 -1201 2100 104 7 0 chr9 91073158 91073445 -51197999 + AluSc SINE Alu 12 300 -9 939 277 95 43 chr9 91073445 91073857 -51197587 + HAL1 LINE L1 1306 1756 -751 318 250 16 57 chr9 91073916 91074040 -51197404 + HAL1 LINE L1 1879 1997 -510 2422 123 47 45 chr9 91074198 91074571 -51196873 - MSTC LTR MaLR 0 428 52 2152 138 0 0 chr9 91074571 91074875 -51196569 - AluSx SINE Alu -8 304 1 2422 123 47 45 chr9 91074875 91074924 -51196520 - MSTC LTR MaLR -376 52 5 1193 215 84 30 chr9 91075262 91075597 -51195847 - MLT1A2 LTR MaLR -21 353 1 236 311 74 15 chr9 91075709 91075844 -51195600 + L1ME LINE L1 5657 5799 -371 2024 142 0 0 chr9 91075923 91076218 -51195226 + AluSx SINE Alu 1 295 -17 2253 118 0 0 chr9 91076615 91076919 -51194525 + AluSg SINE Alu 1 304 -6 23 0 0 0 chr9 91077072 91077095 -51194349 + AT_rich Low_complexity Low_complexity 1 23 0 1373 130 60 0 chr9 91077443 91077659 -51193785 + MER30 DNA MER1_type 2 230 0 3360 259 80 52 chr9 91077771 91079697 -51191747 - L1ME1 LINE L1 -4 6162 4155 749 189 82 74 chr9 91079708 91079978 -51191466 + MLT1D LTR MaLR 1 272 -233 1176 63 0 0 chr9 91079979 91080121 -51191323 - THE1C LTR MaLR -4 371 230 885 103 9 0 chr9 91080186 91080302 -51191142 + AluSg/x SINE Alu 121 237 -73 188 280 0 19 chr9 91080518 91080625 -51190819 + (TATG)n Simple_repeat Simple_repeat 2 106 0 219 302 0 0 chr9 91080641 91080727 -51190717 + (TG)n Simple_repeat Simple_repeat 2 87 0 216 305 12 24 chr9 91082331 91082413 -51189031 - L2 LINE L2 -6 3266 3186 2997 267 76 25 chr9 91082475 91083231 -51188213 + L1MEc LINE L1 34 751 -5645 2260 110 0 0 chr9 91083231 91083523 -51187921 - AluSg1 SINE Alu -17 292 1 2997 267 76 25 chr9 91083523 91084556 -51186888 + L1MEc LINE L1 751 2128 -4268 256 48 48 0 chr9 91084556 91084598 -51186846 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2997 267 76 25 chr9 91084598 91084774 -51186670 + L1MEc LINE L1 2128 2294 -4102 5478 177 51 21 chr9 91084774 91085824 -51185620 + L1PA16 LINE L1 4106 5123 -1043 2095 126 3 31 chr9 91085824 91086142 -51185302 + AluSg SINE Alu 2 310 0 5478 177 51 21 chr9 91086142 91087094 -51184350 + L1PA16 LINE L1 5123 6166 0 3514 234 46 56 chr9 91087090 91087585 -51183859 + L1MEc LINE L1 2245 2743 -3472 * 2204 115 0 13 chr9 91087585 91087898 -51183546 - AluSg SINE Alu 0 310 2 3514 234 46 56 chr9 91087898 91088341 -51183103 + L1MEc LINE L1 2743 3189 -3026 2380 64 37 3 chr9 91088341 91088636 -51182808 + AluSc SINE Alu 1 305 -4 3514 234 46 56 chr9 91088636 91088743 -51182701 + L1MEc LINE L1 3189 3296 -2919 625 221 0 0 chr9 91088743 91088865 -51182579 - FLAM_A SINE Alu -11 122 1 3514 234 46 56 chr9 91088865 91089220 -51182224 + L1MEc LINE L1 3296 3633 -2582 32 81 0 0 chr9 91089220 91089294 -51182150 + AT_rich Low_complexity Low_complexity 1 74 0 632 281 162 2 chr9 91089527 91089821 -51181623 - MLT1G3 LTR MaLR -207 323 11 244 205 0 0 chr9 91089842 91089881 -51181563 - MLT1C LTR MaLR -7 460 422 2000 98 77 3 chr9 91090127 91090413 -51181031 + AluSc SINE Alu 1 307 -2 537 266 113 26 chr9 91090447 91090676 -51180768 + MIR SINE MIR 14 262 0 1951 95 78 3 chr9 91091705 91091988 -51179456 + AluSg SINE Alu 1 304 -6 359 200 283 0 chr9 91093423 91093543 -51177901 - MER5A DNA MER1_type -35 154 1 325 268 62 18 chr9 91093695 91093807 -51177637 - MER103 DNA DNA -48 118 2 273 298 106 0 chr9 91094158 91094262 -51177182 + L2 LINE L2 3145 3259 -13 21 0 0 0 chr9 91096396 91096417 -51175027 + AT_rich Low_complexity Low_complexity 1 21 0 2204 211 48 104 chr9 91096608 91097426 -51174018 + L1MC4 LINE L1 7281 7995 0 317 222 44 78 chr9 91098629 91098745 -51172699 + MIR SINE MIR 37 147 -63 768 230 46 0 chr9 91099288 91099462 -51171982 + MIR SINE MIR 60 241 -21 393 248 229 26 chr9 91100186 91100496 -51170948 - L1ME4a LINE L1 -73 6048 5676 470 283 37 97 chr9 91101972 91102322 -51169122 - MER102b DNA MER1_type -4 337 9 2279 71 7 4 chr9 91103377 91103658 -51167786 + AluSg SINE Alu 1 282 -28 226 0 0 0 chr9 91103658 91103683 -51167761 + (GAAAA)n Simple_repeat Simple_repeat 2 80 0 21 57 0 0 chr9 91105137 91105172 -51166272 + GC_rich Low_complexity Low_complexity 1 35 0 207 139 0 0 chr9 91105506 91105542 -51165902 + (T)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr9 91108096 91108118 -51163326 + AT_rich Low_complexity Low_complexity 1 22 0 208 233 0 0 chr9 91109112 91109155 -51162289 + MIR SINE MIR 213 255 -7 351 346 76 42 chr9 91109336 91109599 -51161845 - L1ME4a LINE L1 -5 6116 5845 288 207 0 0 chr9 91110510 91110568 -51160876 - L2 LINE L2 -2 3270 3213 388 277 8 23 chr9 91110973 91111103 -51160341 + CT-rich Low_complexity Low_complexity 1 128 0 1995 232 67 17 chr9 91112759 91113280 -51158164 + MLT1E2 LTR MaLR 80 626 0 231 231 205 0 chr9 91113923 91114001 -51157443 - MIR3 SINE MIR -9 199 106 1178 184 33 122 chr9 91115800 91116192 -51155252 + MLT1A1 LTR MaLR 1 357 -8 186 43 0 0 chr9 91116575 91116598 -51154846 + (GA)n Simple_repeat Simple_repeat 1 23 0 382 270 44 17 chr9 91118162 91118359 -51153085 + LTR33 LTR ERVL 50 264 -259 435 286 127 4 chr9 91118804 91119160 -51152284 + LTR16A1 LTR ERVL 17 457 0 1218 178 14 10 chr9 91119256 91119548 -51151896 + MLT1A1 LTR MaLR 1 365 0 1749 135 0 0 chr9 91119863 91120115 -51151329 + AluSg SINE Alu 46 297 -13 181 292 73 21 chr9 91121091 91121187 -51150257 + MIR SINE MIR 42 142 -120 225 94 0 0 chr9 91121429 91121461 -51149983 + (CA)n Simple_repeat Simple_repeat 1 32 0 217 255 0 0 chr9 91123414 91123461 -51147983 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 183 205 26 0 chr9 91123813 91123852 -51147592 - MIR SINE MIR -99 109 70 1656 146 57 4 chr9 91125637 91125917 -51145527 - AluJb SINE Alu -17 295 1 2214 101 7 0 chr9 91128402 91128700 -51142744 - AluSq SINE Alu -3 310 11 855 323 80 25 chr9 91129463 91130054 -51141390 + L1MC4a LINE L1 5265 5887 -1921 237 163 0 0 chr9 91130556 91130605 -51140839 + (TG)n Simple_repeat Simple_repeat 2 50 0 314 234 149 0 chr9 91130977 91131084 -51140360 - MLT1A2 LTR MaLR 0 374 279 392 208 13 13 chr9 91131086 91131163 -51140281 - MLT-int LTR MaLR -590 1145 1069 1540 239 34 6 chr9 91131165 91131520 -51139924 + MLT1A1 LTR MaLR 1 365 0 340 284 174 25 chr9 91133348 91133584 -51137860 - LTR16A LTR ERVL -161 289 19 336 306 170 19 chr9 91133721 91133986 -51137458 + LTR16C LTR ERVL 75 379 -112 1301 238 121 21 chr9 91134309 91134729 -51136715 + MLT1C LTR MaLR 1 462 -5 270 297 69 20 chr9 91134886 91134987 -51136457 - MIR SINE MIR -58 204 99 1841 144 6 29 chr9 91137286 91137599 -51133845 + AluSx SINE Alu 1 306 -6 712 305 16 3 chr9 91139084 91139314 -51132130 + MIR SINE MIR 25 259 -3 1310 212 13 39 chr9 91142753 91143059 -51128385 + AluJb SINE Alu 1 298 -14 626 255 92 80 chr9 91143226 91143584 -51127860 + MLT1G1 LTR MaLR 7 348 -219 200 59 29 0 chr9 91143643 91143677 -51127767 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 1530 113 31 0 chr9 91143857 91144086 -51127358 - AluSg/x SINE Alu -6 304 69 529 328 134 6 chr9 91144725 91145060 -51126384 + MLT1J2 LTR MaLR 73 450 0 1811 166 30 51 chr9 91145260 91145633 -51125811 + MLT1A1 LTR MaLR 1 365 0 2779 87 5 14 chr9 91146056 91146423 -51125021 - THE1B LTR MaLR 0 364 1 326 333 48 6 chr9 91150397 91150562 -51120882 + HAL1 LINE L1 2 173 -2334 198 0 0 0 chr9 91150633 91150655 -51120789 + (TG)n Simple_repeat Simple_repeat 1 22 0 888 243 102 4 chr9 91150705 91151147 -51120297 - MLT1G LTR MaLR 0 590 13 1597 300 76 55 chr9 91151221 91152393 -51119051 + HAL1 LINE L1 426 1622 -885 2040 110 34 17 chr9 91152641 91152933 -51118511 - AluSg SINE Alu -11 299 3 1405 142 31 0 chr9 91153397 91153623 -51117821 - MER46A DNA MER2_type -1 235 3 509 306 54 72 chr9 91153643 91154104 -51117340 - L1MC4a LINE L1 -1941 5867 5415 2493 70 0 17 chr9 91154119 91154420 -51117024 + AluY SINE Alu 1 296 -15 325 320 94 49 chr9 91154811 91155161 -51116283 - L1MC4a LINE L1 -815 5331 4966 1610 188 163 0 chr9 91157172 91157540 -51113904 + MSTA LTR MaLR 1 428 0 185 290 0 32 chr9 91158123 91158185 -51113259 + L2 LINE L2 3245 3304 -9 1078 295 124 10 chr9 91158473 91158965 -51112479 - MLT1H1 LTR MaLR -1 554 7 353 245 206 27 chr9 91164222 91164406 -51107038 + MIR SINE MIR 40 256 -6 223 238 167 36 chr9 91165118 91165202 -51106242 - MER5B DNA MER1_type -49 129 35 1841 145 11 7 chr9 91165884 91166187 -51105257 - AluJb SINE Alu 0 304 1 379 266 48 8 chr9 91167360 91167484 -51103960 + MER20B DNA MER1_type 34 162 -621 332 275 62 21 chr9 91167780 91167973 -51103471 + MER20B DNA MER1_type 496 696 -87 183 95 27 68 chr9 91167974 91168048 -51103396 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 251 282 13 0 chr9 91168051 91168129 -51103315 + MER20B DNA MER1_type 674 752 -31 323 311 16 8 chr9 91169234 91169356 -51102088 + (TG)n Simple_repeat Simple_repeat 1 123 0 295 284 189 0 chr9 91169845 91169972 -51101472 - MER46C DNA MER2_type -187 151 1 2357 81 3 10 chr9 91170313 91170611 -51100833 + AluSg SINE Alu 1 296 -14 360 0 0 0 chr9 91171593 91171633 -51099811 + (TG)n Simple_repeat Simple_repeat 2 41 0 2505 71 3 0 chr9 91171643 91171940 -51099504 + AluY SINE Alu 1 298 -13 2394 242 35 27 chr9 91171940 91172567 -51098877 + MER72 LTR ERV1 87 718 -4 1521 292 102 13 chr9 91172603 91173213 -51098231 + L1M4 LINE L1 3964 4669 -1477 191 35 0 35 chr9 91173213 91173242 -51098202 + (TG)n Simple_repeat Simple_repeat 1 28 0 1521 292 102 13 chr9 91173242 91173464 -51097980 + L1M4 LINE L1 4669 4870 -1276 232 331 56 38 chr9 91173902 91174062 -51097382 + L1ME3A LINE L1 6008 6170 0 2029 152 0 16 chr9 91174158 91174468 -51096976 - AluSx SINE Alu -7 305 1 2321 114 0 3 chr9 91175454 91175752 -51095692 + AluSq SINE Alu 1 297 -16 1287 201 0 4 chr9 91175893 91176142 -51095302 + L1M4 LINE L1 5474 5721 -457 1080 51 32 0 chr9 91176594 91176752 -51094692 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 1635 203 3 3 chr9 91176788 91177089 -51094355 + AluJo SINE Alu 4 304 -8 266 280 17 34 chr9 91177147 91177265 -51094179 + L1MEc LINE L1 1915 2030 -4366 375 346 131 11 chr9 91177317 91177577 -51093867 - L1MEd LINE L1 -5308 811 521 240 35 0 0 chr9 91177618 91177647 -51093797 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr9 91178081 91178119 -51093325 + AT_rich Low_complexity Low_complexity 1 38 0 195 42 0 0 chr9 91178203 91178227 -51093217 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 186 103 0 0 chr9 91178249 91178278 -51093166 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 218 324 40 0 chr9 91178282 91178356 -51093088 - L2 LINE L2 -31 3282 3206 252 258 75 83 chr9 91179523 91179643 -51091801 - L1MEd LINE L1 -5947 172 54 398 317 115 6 chr9 91180895 91181078 -51090366 - LTR16C LTR ERVL 0 491 289 342 269 10 0 chr9 91181815 91181919 -51089525 + L1ME3A LINE L1 5238 5342 -804 2101 190 80 25 chr9 91181919 91182356 -51089088 + MLT2B1 LTR ERVL 1 461 -59 283 294 16 8 chr9 91182358 91182484 -51088960 + L1ME3A LINE L1 5678 5804 -366 291 186 81 12 chr9 91182491 91182652 -51088792 + (TA)n Simple_repeat Simple_repeat 1 172 0 277 254 101 59 chr9 91182674 91182843 -51088601 + L1ME3A LINE L1 5779 5954 -216 283 287 43 26 chr9 91182884 91182999 -51088445 + HAL1 LINE L1 2390 2506 -1 192 238 0 0 chr9 91183373 91183436 -51088008 + (CA)n Simple_repeat Simple_repeat 2 64 0 265 353 13 19 chr9 91183443 91183599 -51087845 + (CATG)n Simple_repeat Simple_repeat 4 158 0 215 260 0 0 chr9 91186488 91186538 -51084906 + (TA)n Simple_repeat Simple_repeat 2 51 0 310 263 66 15 chr9 91387766 91387903 -50883541 - L1MC/D LINE L1 -1982 5826 5683 2100 163 106 14 chr9 91389278 91389701 -50881743 - L1MC3 LINE L1 -144 7641 7180 294 247 26 26 chr9 91389706 91389783 -50881661 - MLT1F1 LTR MaLR -456 111 35 285 187 220 0 chr9 91389783 91389874 -50881570 - L1MC3 LINE L1 -688 7097 6987 320 266 150 49 chr9 91389878 91390104 -50881340 - L1MC/D LINE L1 -1752 4394 4146 276 185 62 15 chr9 91390505 91390570 -50880874 + MIR3 SINE MIR 113 180 -28 362 269 290 21 chr9 91391355 91391686 -50879758 + L2 LINE L2 2522 2941 -373 2264 94 0 0 chr9 91392082 91392379 -50879065 - AluSq SINE Alu -16 297 1 202 350 70 37 chr9 91392609 91392823 -50878621 + MIR SINE MIR 26 246 -16 362 320 32 32 chr9 91393790 91393915 -50877529 - MIR SINE MIR -118 144 20 1241 216 27 97 chr9 91394168 91394570 -50876874 + MLT1A2 LTR MaLR 1 374 0 469 171 31 42 chr9 91396329 91396593 -50874851 + (CA)n Simple_repeat Simple_repeat 1 260 0 1895 288 39 0 chr9 91397400 91397962 -50873482 - L1MD3 LINE L1 -10 7985 7402 291 182 195 0 chr9 91397980 91398057 -50873387 - MLT1F1 LTR MaLR -472 95 4 1638 202 104 35 chr9 91398629 91399060 -50872384 - MLT1C LTR MaLR -5 462 2 433 286 94 70 chr9 91399086 91399639 -50871805 + HAL1 LINE L1 470 1035 -1472 244 196 27 27 chr9 91399701 91399813 -50871631 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 694 241 163 60 chr9 91399826 91400492 -50870952 + HAL1 LINE L1 1681 2507 0 1102 271 51 3 chr9 91402215 91402565 -50868879 - MLT2E LTR ERVL -3 625 259 361 276 41 16 chr9 91402636 91402759 -50868685 - MLT2E LTR ERVL -492 136 11 270 259 0 35 chr9 91403495 91403580 -50867864 + G-rich Low_complexity Low_complexity 4 85 0 183 80 0 0 chr9 91404363 91404388 -50867056 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 597 228 101 23 chr9 91405423 91405642 -50865802 + L1ME3A LINE L1 5895 6130 -40 1705 123 32 14 chr9 91406168 91406360 -50865084 + Tigger1 DNA MER2_type 1532 1732 -686 1975 106 3 0 chr9 91406360 91406644 -50864800 + AluSp SINE Alu 21 305 -8 1705 123 32 14 chr9 91406644 91406736 -50864708 + Tigger1 DNA MER2_type 1732 1821 -597 326 290 81 77 chr9 91406987 91407284 -50864160 - L2 LINE L2 -2762 552 255 243 219 94 16 chr9 91409146 91409210 -50862234 - MIR SINE MIR -108 100 32 2211 105 0 3 chr9 91410379 91410685 -50860759 + AluSc SINE Alu 1 305 -4 1343 274 54 37 chr9 91413462 91414015 -50857429 + MLT1F1 LTR MaLR 1 567 0 257 360 22 43 chr9 91414052 91414191 -50857253 - MER5A DNA MER1_type -21 168 33 951 279 104 25 chr9 91414354 91414835 -50856609 + MLT1G1 LTR MaLR 7 525 -70 1999 136 0 7 chr9 91414835 91415179 -50856265 + AluSx SINE Alu 1 342 0 184 200 15 108 chr9 91415297 91415362 -50856082 - L2 LINE L2 -231 3041 2983 788 275 54 30 chr9 91416138 91416473 -50854971 + MLT1F1 LTR MaLR 67 409 -158 1978 116 17 10 chr9 91418489 91418781 -50852663 - AluSq SINE Alu -17 296 3 198 0 0 0 chr9 91418804 91418826 -50852618 + (T)n Simple_repeat Simple_repeat 1 22 0 211 313 77 33 chr9 91419735 91419917 -50851527 + L3b LINE CR1 1189 1378 -205 696 196 110 59 chr9 91421181 91421436 -50850008 - LTR37A LTR ERV1 -75 351 84 2142 116 85 80 chr9 91421674 91421868 -50849576 - MSTA LTR MaLR -2 426 234 2114 41 0 26 chr9 91421868 91422137 -50849307 + L1PA5 LINE L1 5889 6150 -4 2142 116 85 80 chr9 91422137 91422366 -50849078 - MSTA LTR MaLR -194 234 1 432 239 246 14 chr9 91422786 91422928 -50848516 - MER5A DNA MER1_type 0 189 15 1603 212 64 73 chr9 91423216 91423885 -50847559 + L1MDb LINE L1 852 1504 -4902 233 286 33 22 chr9 91424944 91425035 -50846409 - LTR16C LTR ERVL -317 174 83 184 261 89 64 chr9 91425340 91425497 -50845947 + L2 LINE L2 1590 1750 -1564 308 367 90 16 chr9 91425579 91425824 -50845620 + L2 LINE L2 2697 2959 -355 29 78 0 0 chr9 91425900 91425964 -50845480 + AT_rich Low_complexity Low_complexity 1 64 0 1050 269 87 40 chr9 91426298 91426649 -50844795 - MLT1J2 LTR MaLR -1 449 73 2459 128 61 7 chr9 91426649 91427056 -50844388 + MSTB1 LTR MaLR 4 432 0 1050 269 87 40 chr9 91427056 91427128 -50844316 - MLT1J2 LTR MaLR -377 73 6 2282 30 0 0 chr9 91427193 91427461 -50843983 + L1PA2 LINE L1 5888 6155 0 424 317 115 6 chr9 91428207 91428390 -50843054 + MIR SINE MIR 38 240 -22 391 247 194 24 chr9 91428533 91428703 -50842741 - MER3 DNA MER1_type -8 201 3 921 314 0 4 chr9 91429362 91429614 -50841830 - MIR SINE MIR -10 252 2 24 32 0 0 chr9 91429900 91429931 -50841513 + AT_rich Low_complexity Low_complexity 1 31 0 290 297 50 20 chr9 91430000 91430101 -50841343 + Charlie8 DNA MER1_type 139 242 -2175 1823 242 60 22 chr9 91430167 91430750 -50840694 - L1ME1 LINE L1 -5 6161 5557 468 337 49 26 chr9 91431010 91431277 -50840167 + L1MCb LINE L1 46 318 -5727 397 292 110 82 chr9 91431565 91431921 -50839523 - L2 LINE L2 -3 3269 2904 2090 122 0 0 chr9 91432372 91432675 -50838769 - AluSx SINE Alu -9 303 1 247 339 97 5 chr9 91432822 91433017 -50838427 - L1ME2 LINE L1 -219 5945 5733 508 207 41 16 chr9 91433073 91433194 -50838250 + AluJb SINE Alu 2 125 -187 24 0 0 0 chr9 91433206 91433230 -50838214 + AT_rich Low_complexity Low_complexity 1 24 0 234 228 35 63 chr9 91433355 91433481 -50837963 - L1ME1 LINE L1 -746 5400 5283 2478 46 3 0 chr9 91433481 91433784 -50837660 - AluYa5 SINE Alu -7 304 1 234 228 35 63 chr9 91433784 91433869 -50837575 - L1ME1 LINE L1 -863 5283 5197 210 353 0 0 chr9 91436630 91436681 -50834763 - L3 LINE CR1 -16 1561 1511 269 240 31 4 chr9 91437115 91437342 -50834102 + (CA)n Simple_repeat Simple_repeat 1 233 0 2140 113 0 0 chr9 91438010 91438319 -50833125 + AluSc SINE Alu 1 309 0 683 269 84 38 chr9 91438350 91438718 -50832726 - L1ME2 LINE L1 -2072 5736 5352 235 318 104 27 chr9 91438451 91438788 -50832656 - L1PA8A LINE L1 -498 5633 5271 * 2142 200 109 14 chr9 91439242 91440300 -50831144 + L1MB4 LINE L1 4479 6174 -6 455 113 38 0 chr9 91440320 91440400 -50831044 + L1MB8 LINE L1 6095 6177 -1 2164 38 26 0 chr9 91440408 91440673 -50830771 + AluYb8 SINE Alu 34 305 -13 882 196 119 30 chr9 91440767 91441002 -50830442 - L1ME1 LINE L1 -1094 5052 4797 2706 213 56 11 chr9 91441810 91442434 -50829010 - L1MB8 LINE L1 -12 6166 5515 2783 82 21 0 chr9 91442459 91442839 -50828605 + L1PA10 LINE L1 5781 6168 0 1053 191 77 48 chr9 91442857 91443312 -50828132 + L1MB7 LINE L1 5561 6174 -10 1362 145 0 26 chr9 91443840 91444074 -50827370 + LTR64 LTR ERVK 1 228 -330 1055 152 0 0 chr9 91444075 91444233 -50827211 + AluJb SINE Alu 136 293 -19 1492 176 108 10 chr9 91444233 91444540 -50826904 + LTR64 LTR ERVK 222 558 0 227 272 25 12 chr9 91444848 91444929 -50826515 + L1M4 LINE L1 2922 3003 -3143 36 40 0 0 chr9 91445319 91445369 -50826075 + AT_rich Low_complexity Low_complexity 1 50 0 403 178 20 50 chr9 91445369 91445458 -50825986 - L1PA12 LINE L1 -4 6164 6077 2426 70 0 0 chr9 91445458 91445759 -50825685 - AluY SINE Alu -10 301 1 403 178 20 50 chr9 91445759 91445770 -50825674 - L1PA12 LINE L1 -91 6077 6067 1919 149 3 0 chr9 91446098 91446406 -50825038 + AluSq SINE Alu 1 309 -4 2494 165 18 7 chr9 91447198 91447641 -50823803 - L1MB2 LINE L1 -2 6169 5722 400 286 132 35 chr9 91448087 91448429 -50823015 - L2 LINE L2 -411 2903 2529 204 85 37 61 chr9 91448430 91448512 -50822932 + (TTTAA)n Simple_repeat Simple_repeat 3 82 0 216 299 35 23 chr9 91449060 91449147 -50822297 + MIR3 SINE MIR 113 200 -8 376 245 276 10 chr9 91450136 91450332 -50821112 + MIR SINE MIR 10 257 -5 422 190 20 0 chr9 91451573 91451673 -50819771 + GA-rich Low_complexity Low_complexity 2 103 0 208 360 65 49 chr9 91452469 91452836 -50818608 + L2 LINE L2 2167 2539 -775 195 69 0 0 chr9 91452977 91453006 -50818438 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr9 91455387 91455410 -50816034 + AT_rich Low_complexity Low_complexity 1 23 0 639 205 0 0 chr9 91455410 91455527 -50815917 - AluJb SINE Alu -28 284 168 391 332 132 27 chr9 91455719 91456279 -50815165 + L2 LINE L2 105 723 -2591 529 192 40 24 chr9 91456284 91456409 -50815035 - MER94 DNA DNA 0 134 8 296 309 287 20 chr9 91456448 91456891 -50814553 + L2 LINE L2 740 1300 -2014 2581 223 78 55 chr9 91456901 91457776 -50813668 + L1MDa LINE L1 1401 2295 -4245 218 304 96 7 chr9 91457814 91457949 -50813495 + L2 LINE L2 1700 1846 -1468 261 0 0 0 chr9 91458656 91458685 -50812759 + (TG)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr9 91458684 91458704 -50812740 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 1916 191 33 64 chr9 91460080 91460562 -50810882 - MLT1C LTR MaLR 0 467 1 789 239 91 0 chr9 91461009 91461206 -50810238 + MER115 DNA AcHobo 445 659 -34 754 262 104 65 chr9 91462683 91463069 -50808375 + MLT1J LTR MaLR 4 374 -137 875 19 19 0 chr9 91463069 91463177 -50808267 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 2064 102 0 7 chr9 91463182 91463465 -50807979 - AluSq SINE Alu -30 283 3 754 262 104 65 chr9 91463465 91463561 -50807883 + MLT1J LTR MaLR 377 511 0 384 206 39 29 chr9 91466073 91466175 -50805269 + LTR16C LTR ERVL 80 182 -309 278 282 24 0 chr9 91466307 91466392 -50805052 + MER63 DNA MER1_type 1 713 -349 374 245 0 0 chr9 91466480 91466582 -50804862 + MER63 DNA MER1_type 919 1020 -40 367 243 12 0 chr9 91466959 91467132 -50804312 + (TG)n Simple_repeat Simple_repeat 1 175 0 300 250 22 0 chr9 91467145 91467237 -50804207 + (TG)n Simple_repeat Simple_repeat 2 95 0 233 278 7 0 chr9 91467253 91467404 -50804040 + (TG)n Simple_repeat Simple_repeat 2 153 0 273 271 0 0 chr9 91467480 91467635 -50803809 + (TG)n Simple_repeat Simple_repeat 1 155 0 339 248 86 19 chr9 91467864 91467969 -50803475 + LTR67 LTR ERVL 436 547 -10 300 271 56 9 chr9 91468469 91468576 -50802868 + MER5A DNA MER1_type 78 189 0 1607 262 137 25 chr9 91470595 91471157 -50800287 - MER21B LTR ERV1 -196 667 43 286 252 59 8 chr9 91471653 91471772 -50799672 + (TG)n Simple_repeat Simple_repeat 1 125 0 605 262 112 21 chr9 91471839 91472125 -50799319 + MER63 DNA MER1_type 746 1057 -4 324 261 33 22 chr9 91472855 91472947 -50798497 + L1MC4 LINE L1 6610 6702 -1340 2259 74 0 10 chr9 91475173 91475469 -50795975 - AluSc SINE Alu -1 308 16 212 255 61 71 chr9 91478357 91478455 -50792989 - L2 LINE L2 -54 3259 3163 259 291 205 17 chr9 91479041 91479158 -50792286 + MIR SINE MIR 8 146 -116 243 276 13 13 chr9 91480130 91480206 -50791238 - MIR SINE MIR -130 132 57 418 328 130 10 chr9 91480517 91480709 -50790735 + MIR SINE MIR 31 245 -17 274 57 0 0 chr9 91481667 91481702 -50789742 - MLT2B1 LTR ERVL 0 520 486 258 56 0 0 chr9 91481714 91481750 -50789694 + (TC)n Simple_repeat Simple_repeat 1 36 0 248 0 31 0 chr9 91481842 91481874 -50789570 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 282 56 0 0 chr9 91481873 91481909 -50789535 + (TG)n Simple_repeat Simple_repeat 2 37 0 1941 212 56 9 chr9 91481915 91482358 -50789086 - MLT2B1 LTR ERVL -56 464 1 24 0 0 0 chr9 91483758 91483782 -50787662 + AT_rich Low_complexity Low_complexity 1 24 0 1990 113 7 0 chr9 91483782 91484065 -50787379 - AluSg SINE Alu -17 293 9 618 95 0 0 chr9 91484072 91484156 -50787288 - AluSc SINE Alu -11 298 215 354 237 89 7 chr9 91484889 91485024 -50786420 + MER103 DNA DNA 5 150 -16 2500 48 0 3 chr9 91485466 91485775 -50785669 - AluY SINE Alu -3 308 1 182 256 86 60 chr9 91485841 91485958 -50785486 + MIR SINE MIR 132 251 -11 1702 193 45 25 chr9 91486173 91486323 -50785121 + MLT1A1 LTR MaLR 1 147 -218 1736 158 3 13 chr9 91486323 91486626 -50784818 + AluJo SINE Alu 11 310 -2 1702 193 45 25 chr9 91486626 91486833 -50784611 + MLT1A1 LTR MaLR 147 365 0 271 294 28 18 chr9 91488147 91488256 -50783188 + MLT1H LTR MaLR 126 235 -314 2045 109 0 10 chr9 91488502 91488818 -50782626 + AluSx SINE Alu 1 312 0 218 301 115 9 chr9 91488905 91489018 -50782426 + L2 LINE L2 3187 3311 -2 1172 246 110 29 chr9 91489498 91489843 -50781601 - LTR16C LTR ERVL -2 489 117 275 269 39 70 chr9 91490999 91491155 -50780289 + ERVL LTR ERVL 4661 4811 -953 552 347 63 25 chr9 91491190 91491634 -50779810 + ERVL LTR ERVL 3773 4233 -1531 1013 342 65 29 chr9 91491671 91492667 -50778777 + ERVL LTR ERVL 4256 5287 -367 491 288 98 22 chr9 91492894 91493207 -50778237 + LTR16A LTR ERVL 58 408 -49 1464 217 41 49 chr9 91495971 91496362 -50775082 + MLT1B LTR MaLR 3 390 0 189 191 95 0 chr9 91497940 91497982 -50773462 + MIR SINE MIR 34 79 -129 210 329 12 0 chr9 91498186 91498268 -50773176 + CT-rich Low_complexity Low_complexity 2 84 0 332 274 216 21 chr9 91500035 91500225 -50771219 - MIR SINE MIR -18 244 18 1407 226 26 31 chr9 91501112 91501461 -50769983 - MLT1A1 LTR MaLR -5 360 14 6395 161 36 10 chr9 91501471 91502911 -50768533 + L1MC1 LINE L1 4752 6327 -6 1146 251 147 34 chr9 91503057 91503595 -50767849 - MLT1E1 LTR MaLR -7 647 3 347 316 75 35 chr9 91503687 91503861 -50767583 + MIR SINE MIR 56 236 -26 1345 222 0 9 chr9 91504847 91505162 -50766282 + MER33 DNA MER1_type 1 312 -12 236 341 57 57 chr9 91505694 91505817 -50765627 + L2 LINE L2 3115 3237 -35 2132 117 10 0 chr9 91507392 91507700 -50763744 - AluSx SINE Alu -1 311 1 228 313 0 0 chr9 91509846 91509913 -50761531 + (CATA)n Simple_repeat Simple_repeat 2 68 0 183 276 0 0 chr9 91509918 91510005 -50761439 + (CA)n Simple_repeat Simple_repeat 2 88 0 201 74 0 0 chr9 91512110 91512137 -50759307 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 505 183 0 0 chr9 91512203 91512285 -50759159 + Tigger1 DNA MER2_type 2337 2418 0 36 23 0 0 chr9 91512285 91512328 -50759116 + AT_rich Low_complexity Low_complexity 1 43 0 266 174 0 29 chr9 91512328 91512397 -50759047 - L1MA5A LINE L1 0 6297 6231 1976 137 0 6 chr9 91513034 91513348 -50758096 - AluSx SINE Alu 0 312 1 251 114 23 0 chr9 91513348 91513392 -50758052 + L2 LINE L2 2601 2645 -669 2243 164 48 40 chr9 91513471 91513952 -50757492 - MER31A LTR ERV1 0 485 1 1267 147 20 32 chr9 91514579 91514830 -50756614 + L1MB3 LINE L1 5936 6183 0 781 179 24 0 chr9 91515030 91515153 -50756291 - LTR12 LTR ERV1 -234 480 355 339 197 0 0 chr9 91515153 91515224 -50756220 - LTR30 LTR ERV1 -102 620 550 452 159 297 22 chr9 91515224 91515406 -50756038 - LTR12 LTR ERV1 -430 284 53 274 231 0 0 chr9 91515406 91515458 -50755986 - LTR30 LTR ERV1 -670 52 1 406 307 74 30 chr9 91515739 91516088 -50755356 + L1MB3 LINE L1 5174 5536 -762 237 132 0 0 chr9 91516105 91516143 -50755301 + (CA)n Simple_repeat Simple_repeat 1 38 0 2149 128 0 0 chr9 91516402 91516714 -50754730 + AluSq SINE Alu 1 312 -1 1117 204 12 12 chr9 91517043 91517298 -50754146 - L1MD3 LINE L1 0 7995 7741 387 0 0 0 chr9 91517822 91517865 -50753579 + (TG)n Simple_repeat Simple_repeat 2 44 0 1914 197 8 5 chr9 91518005 91518385 -50753059 + L1MB3 LINE L1 5803 6183 0 1382 222 103 56 chr9 91519194 91519716 -50751728 - MLT1E LTR MaLR -2 591 45 327 350 35 20 chr9 91520207 91520407 -50751037 - MIR SINE MIR -3 259 57 1554 233 44 101 chr9 91520440 91520918 -50750526 - L1MDa LINE L1 -1442 5098 4681 2007 92 88 0 chr9 91520918 91521202 -50750242 - AluY SINE Alu 0 311 3 1554 233 44 101 chr9 91521202 91521512 -50749932 - L1MDa LINE L1 -1859 4681 4355 382 221 10 10 chr9 91521604 91521708 -50749736 - L1MDa LINE L1 -2191 4349 4246 1664 174 106 29 chr9 91521710 91522050 -50749394 + MER47A DNA MER2_type 1 366 0 4521 225 50 39 chr9 91522050 91523279 -50748165 - L1MDa LINE L1 -2296 4244 3030 806 264 135 28 chr9 91523279 91523605 -50747839 + MLT1A1 LTR MaLR 3 363 -2 4521 225 50 39 chr9 91523605 91523804 -50747640 - L1MDa LINE L1 -3510 3030 2835 1996 139 0 0 chr9 91523804 91524105 -50747339 - AluSq SINE Alu -12 301 1 4521 225 50 39 chr9 91524105 91525281 -50746163 - L1MDa LINE L1 -3705 2835 1611 1941 232 58 24 chr9 91525286 91526254 -50745190 - L1MDa LINE L1 -5047 1493 18 22 35 0 0 chr9 91526682 91526711 -50744733 + AT_rich Low_complexity Low_complexity 1 29 0 2221 144 21 8 chr9 91526884 91527258 -50744186 - MLT1B LTR MaLR -11 379 1 324 220 68 51 chr9 91527866 91527984 -50743460 + L2 LINE L2 3139 3258 -14 563 358 5 5 chr9 91528562 91528766 -50742678 - MIR SINE MIR -10 252 49 2344 107 16 40 chr9 91529222 91529595 -50741849 + THE1B LTR MaLR 1 364 0 323 295 56 68 chr9 91529715 91529949 -50741495 + L2 LINE L2 2830 3060 -212 198 411 0 0 chr9 91530232 91530322 -50741122 + MIR SINE MIR 34 123 -139 1993 163 17 3 chr9 91530695 91531050 -50740394 - MER47A DNA MER2_type -6 360 1 267 254 0 0 chr9 91531497 91531556 -50739888 + (CA)n Simple_repeat Simple_repeat 1 59 0 2127 149 103 5 chr9 91531768 91532158 -50739286 - MSTA LTR MaLR 0 428 1 213 39 0 0 chr9 91532281 91532307 -50739137 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1155 231 121 19 chr9 91532842 91533262 -50738182 + MLT1C LTR MaLR 5 467 0 291 328 18 34 chr9 91534740 91534883 -50736561 + MIR SINE MIR 42 183 -75 34 55 0 0 chr9 91535386 91535441 -50736003 + AT_rich Low_complexity Low_complexity 1 55 0 2127 211 77 25 chr9 91535945 91536475 -50734969 + MER74A LTR ERVL 1 558 0 341 217 77 84 chr9 91537469 91537612 -50733832 - MLT1J LTR MaLR -139 372 231 447 298 205 0 chr9 91537910 91538115 -50733329 - MIR SINE MIR 0 262 16 1223 218 91 70 chr9 91538125 91538542 -50732902 + MER63B DNA MER1_type 11 436 0 1609 174 0 14 chr9 91539238 91539557 -50731887 - AluJb SINE Alu 0 315 1 398 91 197 0 chr9 91539969 91540035 -50731409 + MADE1 DNA Mariner 1 79 -1 188 354 20 10 chr9 91540121 91540220 -50731224 + L3 LINE CR1 1284 1383 -194 320 153 56 14 chr9 91540399 91540471 -50730973 - LTR16C LTR ERVL -8 483 409 328 273 140 70 chr9 91540938 91540954 -50730490 + HAL1 LINE L1 887 900 -1607 2250 125 6 0 chr9 91540954 91541265 -50730179 + AluSq SINE Alu 1 313 0 328 273 140 70 chr9 91541265 91542021 -50729423 + HAL1 LINE L1 900 1713 -794 721 284 8 27 chr9 91542503 91542764 -50728680 - L1ME1 LINE L1 -5 6161 5906 1207 202 9 105 chr9 91543181 91543513 -50727931 + AluJo SINE Alu 1 300 -2 1308 252 68 23 chr9 91543703 91544143 -50727301 - MLT1G LTR MaLR -1 589 130 1394 220 38 57 chr9 91544213 91544585 -50726859 - MLT1A2 LTR MaLR -9 365 1 1688 121 57 4 chr9 91544678 91544926 -50726518 - AluSg1 SINE Alu -12 297 37 2480 149 47 0 chr9 91544945 91545354 -50726090 - MSTC LTR MaLR 0 428 1 2347 75 0 10 chr9 91546607 91546901 -50724543 + AluSc SINE Alu 1 291 -18 1088 232 28 6 chr9 91547430 91547747 -50723697 + MER33 DNA MER1_type 1 314 -10 2216 111 0 23 chr9 91547867 91548174 -50723270 + AluSg SINE Alu 1 300 -10 229 279 0 0 chr9 91548625 91548693 -50722751 + L1MCa LINE L1 899 966 -5460 483 307 74 60 chr9 91549267 91549697 -50721747 - L1M4 LINE L1 -2102 4044 3609 523 259 57 60 chr9 91549999 91550281 -50721163 - HsTC2 DNA Tc2 -13 1885 1605 2176 114 23 3 chr9 91551163 91551469 -50719975 + AluSq SINE Alu 1 312 -1 1552 205 3 24 chr9 91552230 91552553 -50718891 - AluJo SINE Alu 0 317 1 2993 131 4 7 chr9 91554497 91554962 -50716482 + MER4C LTR ERV1 1 464 -1 293 293 150 7 chr9 91556515 91556655 -50714789 - L1ME1 LINE L1 -2247 5561 5402 338 225 11 22 chr9 91556850 91556939 -50714505 - Cheshire DNA MER1_type -1489 931 844 * 2055 223 101 26 chr9 91556933 91557547 -50713897 - Cheshire DNA MER1_type -1760 660 1 205 342 42 25 chr9 91557638 91557758 -50713686 - L2 LINE L2 0 3272 3151 2066 67 56 0 chr9 91558299 91558589 -50712855 - AluSx SINE Alu 0 306 2 1952 167 0 0 chr9 91560457 91560769 -50710675 + AluSx SINE Alu 1 312 0 722 216 17 0 chr9 91560769 91561011 -50710433 + GA-rich Low_complexity Low_complexity 1 246 0 246 304 82 38 chr9 91561226 91561384 -50710060 - MIR3 SINE MIR -3 205 41 2058 132 0 3 chr9 91561505 91561808 -50709636 - AluY SINE Alu -9 302 1 4369 203 117 98 chr9 91562545 91563162 -50708282 - L1MD3 LINE L1 0 7995 7391 301 286 0 0 chr9 91563162 91563239 -50708205 - MLT1F1 LTR MaLR -490 77 1 4369 203 117 98 chr9 91563239 91564145 -50707299 - L1MD3 LINE L1 -604 7391 6365 310 313 61 35 chr9 91564706 91564775 -50706669 - MER5B DNA MER1_type -56 122 47 3256 146 5 50 chr9 91564775 91565321 -50706123 - L1MB3 LINE L1 -7 6176 5658 2113 105 7 17 chr9 91565321 91565616 -50705828 + AluSq SINE Alu 1 292 -21 3256 146 5 50 chr9 91565616 91565667 -50705777 - L1MB3 LINE L1 -525 5658 5606 310 313 61 35 chr9 91565667 91565712 -50705732 - MER5B DNA MER1_type -131 47 5 242 241 0 0 chr9 91566235 91566289 -50705155 + A-rich Low_complexity Low_complexity 1 54 0 192 40 0 0 chr9 91567291 91567316 -50704128 + (CA)n Simple_repeat Simple_repeat 1 25 0 232 242 242 30 chr9 91567772 91567871 -50703573 + MER112 DNA MER1_type 15 134 -126 249 250 0 0 chr9 91567977 91568033 -50703411 + MER112 DNA MER1_type 193 248 -12 195 282 39 13 chr9 91568073 91568151 -50703293 - MIR SINE MIR -70 192 113 468 222 117 29 chr9 91569106 91569277 -50702167 - MER5A DNA MER1_type 0 189 4 184 259 49 25 chr9 91571557 91571638 -50699806 - MIR SINE MIR -70 192 110 351 133 39 67 chr9 91572452 91572632 -50698812 + (CACAC)n Simple_repeat Simple_repeat 1 175 0 292 121 35 64 chr9 91572702 91572875 -50698569 + (CACAC)n Simple_repeat Simple_repeat 3 170 0 208 265 43 26 chr9 91572896 91573013 -50698431 + (CATA)n Simple_repeat Simple_repeat 3 121 0 294 137 48 42 chr9 91573015 91573183 -50698261 + (CA)n Simple_repeat Simple_repeat 1 169 0 1170 94 76 0 chr9 91573297 91573468 -50697976 - MER30 DNA MER1_type -46 184 1 204 366 0 0 chr9 91573648 91573719 -50697725 + (TG)n Simple_repeat Simple_repeat 1 71 0 221 281 52 42 chr9 91574016 91574112 -50697332 + MER5B DNA MER1_type 79 175 -3 1125 265 27 12 chr9 91574122 91574450 -50696994 - MER58B DNA MER1_type 0 341 9 2408 77 0 13 chr9 91575188 91575499 -50695945 - AluY SINE Alu -4 307 1 22 35 0 0 chr9 91575730 91575759 -50695685 + AT_rich Low_complexity Low_complexity 1 29 0 331 252 79 24 chr9 91576399 91576526 -50694918 - MER5B DNA MER1_type -4 174 41 323 221 29 0 chr9 91576640 91576708 -50694736 + MLT1D LTR MaLR 1 70 -435 1583 180 27 17 chr9 91576708 91577003 -50694441 + MLT1A1 LTR MaLR 1 298 -67 405 0 0 0 chr9 91577004 91577049 -50694395 + (TG)n Simple_repeat Simple_repeat 2 46 0 453 143 0 0 chr9 91577050 91577120 -50694324 - AluSx SINE Alu -31 281 212 1606 109 0 0 chr9 91577157 91577367 -50694077 - AluSx SINE Alu -102 210 1 2088 174 87 8 chr9 91577436 91577838 -50693606 + MLT1D LTR MaLR 72 505 0 1021 275 44 43 chr9 91577910 91578127 -50693317 - L1M4c LINE L1 -4214 2170 1955 2175 139 0 3 chr9 91578127 91578436 -50693008 + AluSx SINE Alu 1 308 -4 1021 275 44 43 chr9 91578436 91578807 -50692637 - L1M4c LINE L1 -4429 1955 1484 2568 60 3 0 chr9 91580278 91580579 -50690865 + AluY SINE Alu 1 302 -9 345 172 17 0 chr9 91581782 91581840 -50689604 - MER74A LTR ERVL -392 166 108 1953 229 39 28 chr9 91582352 91582849 -50688595 - MER74A LTR ERVL 0 558 53 1988 145 57 31 chr9 91582849 91583235 -50688209 - MSTD LTR MaLR 0 396 1 1953 229 39 28 chr9 91583235 91583278 -50688166 - MER74A LTR ERVL -505 53 12 571 236 160 42 chr9 91583560 91583797 -50687647 + LTR16C LTR ERVL 221 485 -6 234 354 72 53 chr9 91583812 91584131 -50687313 + L2 LINE L2 2948 3272 0 1409 197 38 49 chr9 91584443 91584808 -50686636 + MLT1A1 LTR MaLR 1 361 -4 23 33 0 0 chr9 91585205 91585235 -50686209 + AT_rich Low_complexity Low_complexity 1 30 0 229 248 114 74 chr9 91587119 91587268 -50684176 + LTR33 LTR ERVL 210 364 -157 225 0 0 0 chr9 91588280 91588305 -50683139 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1352 226 4 0 chr9 91588334 91588595 -50682849 + Tigger7 DNA MER2_type 6 267 -2220 438 235 0 0 chr9 91588594 91588612 -50682832 + Tigger7 DNA MER2_type 2394 2411 -80 * 360 64 0 0 chr9 91588612 91588659 -50682785 + (CA)n Simple_repeat Simple_repeat 2 48 0 438 235 0 0 chr9 91588659 91588738 -50682706 + Tigger7 DNA MER2_type 2410 2491 0 1897 318 73 31 chr9 91589749 91590753 -50680691 + L2 LINE L2 311 1356 -1958 892 186 162 66 chr9 91590753 91591086 -50680358 + MLT1A1 LTR MaLR 1 365 0 854 299 55 32 chr9 91591296 91591644 -50679800 + L2 LINE L2 1824 2179 -1135 992 293 65 59 chr9 91591979 91592454 -50678990 + L2 LINE L2 2232 2709 -605 557 241 122 34 chr9 91592470 91592697 -50678747 - L1ME LINE L1 -534 5866 5660 2421 68 0 0 chr9 91592697 91592993 -50678451 - AluY SINE Alu -15 296 1 557 241 122 34 chr9 91592993 91593164 -50678280 - L1ME LINE L1 -740 5660 5433 1120 249 58 6 chr9 91593188 91593533 -50677911 + L1ME3 LINE L1 5623 5985 -177 1007 312 91 34 chr9 91593629 91594151 -50677293 + L2 LINE L2 2761 3313 0 306 299 102 12 chr9 91594171 91594425 -50677019 - L1ME LINE L1 -3194 3188 2912 415 293 129 23 chr9 91594567 91594823 -50676621 - L1ME LINE L1 -3603 2779 2497 2121 99 24 10 chr9 91594823 91595117 -50676327 + AluY SINE Alu 1 298 -13 22 0 0 0 chr9 91595216 91595238 -50676206 + AT_rich Low_complexity Low_complexity 1 22 0 702 120 0 0 chr9 91595404 91595504 -50675940 - AluSc SINE Alu -52 257 158 981 235 21 8 chr9 91595611 91595849 -50675595 - MLT1D LTR MaLR 0 505 265 9463 176 56 42 chr9 91595849 91596325 -50675119 - L1ME LINE L1 -4083 2301 1833 2307 103 0 0 chr9 91596325 91596626 -50674818 - AluY SINE Alu -10 301 1 9463 176 56 42 chr9 91596626 91596796 -50674648 - L1ME LINE L1 -4551 1833 1667 2117 145 0 0 chr9 91596796 91597100 -50674344 - AluSx SINE Alu -8 304 1 9463 176 56 42 chr9 91597100 91597710 -50673734 - L1ME LINE L1 -4717 1667 1067 2798 6 0 25 chr9 91597710 91598028 -50673416 - AluYa5 SINE Alu -1 310 1 9463 176 56 42 chr9 91598028 91599032 -50672412 - L1ME LINE L1 -5317 1067 8 180 0 0 0 chr9 91599100 91599120 -50672324 + (CA)n Simple_repeat Simple_repeat 1 20 0 231 292 0 0 chr9 91599823 91599888 -50671556 - HAL1 LINE L1 -854 1653 1589 337 271 174 14 chr9 91600530 91600674 -50670770 - HAL1 LINE L1 -914 1593 1427 236 29 0 29 chr9 91600863 91600897 -50670547 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 567 43 0 0 chr9 91600900 91600970 -50670474 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 2221 92 0 4 chr9 91600974 91601255 -50670189 - AluY SINE Alu -31 280 1 198 0 0 0 chr9 91604151 91604173 -50667271 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2876 48 3 3 chr9 91604173 91604529 -50666915 - L1PA7 LINE L1 -18 6136 5781 446 259 141 11 chr9 91604614 91604758 -50666686 + MER3 DNA MER1_type 1 176 -33 1827 192 0 0 chr9 91604758 91605060 -50666384 + AluJb SINE Alu 11 312 0 446 259 141 11 chr9 91605060 91605100 -50666344 + MER3 DNA MER1_type 176 209 0 630 329 173 36 chr9 91605292 91606753 -50664691 + L2 LINE L2 86 1746 -1568 200 313 116 14 chr9 91606753 91606900 -50664544 + L2 LINE L2 2289 2450 -864 214 290 20 40 chr9 91606989 91607089 -50664355 + MIR SINE MIR 41 138 -124 2282 114 0 0 chr9 91607529 91607837 -50663607 - AluSg SINE Alu -2 308 1 387 186 93 8 chr9 91608057 91608175 -50663269 - LTR16C LTR ERVL -2 489 362 2558 58 0 0 chr9 91608201 91608512 -50662932 - AluY SINE Alu 0 311 1 192 351 23 69 chr9 91608827 91608958 -50662486 + MIR SINE MIR 24 148 -114 2244 276 85 26 chr9 91609015 91610906 -50660538 - L1ME LINE L1 -512 5650 3651 254 303 46 40 chr9 91610936 91611259 -50660185 - L1ME LINE L1 -2566 3580 3256 304 102 20 0 chr9 91611324 91611373 -50660071 - U5 snRNA snRNA -64 52 3 394 289 105 4 chr9 91611383 91611622 -50659822 - L1ME LINE L1 -3009 3137 2875 252 228 53 35 chr9 91612185 91612299 -50659145 - L1ME LINE L1 -3272 2874 2759 1783 196 25 20 chr9 91612813 91613341 -50658103 - MER45B DNA AcHobo -541 1040 445 2405 88 0 0 chr9 91613341 91613647 -50657797 - AluSp SINE Alu -7 306 1 1783 196 25 20 chr9 91613647 91613761 -50657683 - MER45B DNA AcHobo -1136 445 333 252 300 195 8 chr9 91614823 91615073 -50656371 - L2 LINE L2 -274 2998 2704 183 156 0 0 chr9 91615493 91615525 -50655919 + C-rich Low_complexity Low_complexity 5 36 0 21 36 0 0 chr9 91615959 91615987 -50655457 + AT_rich Low_complexity Low_complexity 1 28 0 343 284 96 29 chr9 91616035 91616243 -50655201 - L1ME LINE L1 -402 5719 5498 1134 249 114 37 chr9 91617362 91617899 -50653545 - L1ME1 LINE L1 -5 6230 5653 976 198 21 102 chr9 91617907 91618280 -50653164 - L1MA9 LINE L1 -38 6274 5932 1306 234 31 49 chr9 91618337 91619053 -50652391 - L1ME1 LINE L1 -566 5669 4962 404 211 32 8 chr9 91619067 91619190 -50652254 - L1ME1 LINE L1 -1372 4843 4718 * 623 206 57 52 chr9 91619186 91619434 -50652010 - L1ME1 LINE L1 -1818 4397 4149 481 224 81 19 chr9 91619444 91619605 -50651839 + LOR1b LTR ERV1 1 171 -290 369 0 0 0 chr9 91619849 91619890 -50651554 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 1582 166 71 20 chr9 91619890 91620186 -50651258 - AluSq SINE Alu 0 313 3 506 254 153 4 chr9 91620191 91620466 -50650978 - L1ME1 LINE L1 -5253 1143 828 1877 198 48 27 chr9 91620496 91620975 -50650469 - L1MC2 LINE L1 -11 6333 5845 5341 185 35 24 chr9 91620979 91622655 -50648789 - L1MC1 LINE L1 0 6333 4640 30 97 0 0 chr9 91622657 91622750 -50648694 + AT_rich Low_complexity Low_complexity 1 93 0 743 271 7 7 chr9 91623006 91623283 -50648161 - L1MC1 LINE L1 -1575 4571 4295 41099 30 21 1 chr9 91623301 91629322 -50642122 + L1HS LINE L1 2 6145 -10 228 35 0 0 chr9 91629322 91629351 -50642093 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 822 254 9 0 chr9 91629377 91629594 -50641850 - L1MC1 LINE L1 -1888 4258 4040 225 268 12 12 chr9 91629758 91629840 -50641604 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 384 274 229 14 chr9 91629861 91630084 -50641360 - L2 LINE L2 -1321 1993 1723 233 275 58 0 chr9 91630097 91630166 -50641278 - L2 LINE L2 -1894 1420 1348 322 340 107 19 chr9 91630316 91630475 -50640969 + MER5A DNA MER1_type 14 186 -3 24 32 0 0 chr9 91632822 91632853 -50638591 + AT_rich Low_complexity Low_complexity 1 31 0 410 53 18 0 chr9 91633157 91633214 -50638230 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 1121 136 133 14 chr9 91633361 91633640 -50637804 + L1MA8 LINE L1 5979 6290 -1 193 346 65 9 chr9 91634412 91634519 -50636925 - L2 LINE L2 -20 3252 3140 2439 128 107 28 chr9 91634560 91635004 -50636440 + LTR12 LTR ERV1 1 469 -245 1701 138 4 4 chr9 91635004 91635273 -50636171 + AluSx SINE Alu 31 299 -13 2439 128 107 28 chr9 91635273 91635287 -50636157 + LTR12 LTR ERV1 469 480 -234 598 245 23 35 chr9 91635321 91635531 -50635913 - MIR SINE MIR -33 229 22 280 146 73 7 chr9 91636016 91636153 -50635291 + (CA)n Simple_repeat Simple_repeat 2 147 0 465 123 72 14 chr9 91636175 91636455 -50634989 + (CA)n Simple_repeat Simple_repeat 1 296 0 313 170 35 26 chr9 91636468 91636669 -50634775 + (CA)n Simple_repeat Simple_repeat 1 202 0 330 205 0 0 chr9 91636860 91636938 -50634506 + GA-rich Low_complexity Low_complexity 4 81 0 673 264 36 23 chr9 91637354 91637574 -50633870 - L1ME1 LINE L1 -35 6131 5909 932 229 25 25 chr9 91637601 91637885 -50633559 - L1MDb LINE L1 -3550 2856 2573 2399 90 0 3 chr9 91637901 91638213 -50633231 - AluY SINE Alu 0 311 1 2264 96 7 13 chr9 91638219 91638522 -50632922 - AluSq SINE Alu -12 301 1 775 188 34 23 chr9 91638546 91638722 -50632722 - L1MC2 LINE L1 -13 6331 6154 433 241 45 38 chr9 91638724 91638857 -50632587 - L1MC3 LINE L1 -180 7605 7472 440 216 45 0 chr9 91638894 91639005 -50632439 - L1MD1 LINE L1 -1 6241 6126 212 59 29 0 chr9 91639175 91639209 -50632235 + (TG)n Simple_repeat Simple_repeat 1 35 0 739 237 65 56 chr9 91639226 91639458 -50631986 - L1MD2 LINE L1 -150 6209 5976 2664 223 74 38 chr9 91639458 91639938 -50631506 - L1MDb LINE L1 -4542 1864 1403 3451 169 44 103 chr9 91639938 91640953 -50630491 + LTR5 LTR ERVK 1 955 -14 2664 223 74 38 chr9 91640953 91641548 -50629896 - L1MDb LINE L1 -5003 1403 792 1960 190 37 26 chr9 91642001 91642458 -50628986 - L1MB2 LINE L1 -2 6169 5708 356 304 65 20 chr9 91643559 91643760 -50627684 - HAL1 LINE L1 0 2507 2298 24 67 0 0 chr9 91643803 91643848 -50627596 + AT_rich Low_complexity Low_complexity 1 45 0 919 154 7 0 chr9 91643882 91644031 -50627413 - L1MB3 LINE L1 -14 6169 6020 21 0 0 0 chr9 91644036 91644057 -50627387 + AT_rich Low_complexity Low_complexity 1 21 0 271 217 65 54 chr9 91644279 91644371 -50627073 - HAL1 LINE L1 -271 2236 2144 379 281 116 16 chr9 91644495 91644698 -50626746 + MLT1F LTR MaLR 18 252 -303 660 229 82 57 chr9 91644774 91645089 -50626355 + MLT1F LTR MaLR 212 534 -8 634 250 98 29 chr9 91645127 91645371 -50626073 - HAL1 LINE L1 -513 1994 1734 396 261 47 93 chr9 91645366 91645623 -50625821 - HAL1 LINE L1 -1487 1020 776 * 24 53 0 0 chr9 91646523 91646561 -50624883 + AT_rich Low_complexity Low_complexity 1 38 0 2208 108 0 10 chr9 91647202 91647507 -50623937 - AluSx SINE Alu -10 302 1 2417 103 0 0 chr9 91647867 91648179 -50623265 - AluSx SINE Alu 0 312 1 2271 104 0 10 chr9 91648511 91648820 -50622624 + AluY SINE Alu 1 306 -5 2262 181 45 17 chr9 91650200 91650620 -50620824 - MSTB1 LTR MaLR 0 432 1 183 80 0 0 chr9 91651009 91651034 -50620410 + (TGG)n Simple_repeat Simple_repeat 3 27 0 209 266 227 31 chr9 91651331 91651459 -50619985 - MER5A DNA MER1_type 0 189 37 787 212 0 0 chr9 91652933 91653065 -50618379 + FLAM_A SINE Alu 1 132 -1 371 215 0 13 chr9 91653082 91653153 -50618291 + AluJ/FRAM SINE Alu 217 288 -14 390 21 0 0 chr9 91653153 91653200 -50618244 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 3601 116 10 2 chr9 91654050 91654543 -50616901 + LOR1a LTR ERV1 1 497 0 759 191 16 0 chr9 91654987 91655113 -50616331 + MER2 DNA MER2_type 1 128 -217 1021 163 102 0 chr9 91655176 91655372 -50616072 + MER2 DNA MER2_type 129 344 -1 686 187 142 36 chr9 91656629 91656848 -50614596 + ORSL DNA AcHobo 1 242 -33 612 27 0 0 chr9 91656993 91657067 -50614377 + (TC)n Simple_repeat Simple_repeat 1 74 0 303 28 0 0 chr9 91657066 91657102 -50614342 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 554 279 6 6 chr9 91657880 91657897 -50613547 - L1MA10 LINE L1 0 6334 6318 4327 222 56 38 chr9 91657897 91659887 -50611557 - L1ME1 LINE L1 -8 6394 4361 32 0 0 0 chr9 91659911 91659943 -50611501 + AT_rich Low_complexity Low_complexity 1 32 0 1418 147 14 14 chr9 91659944 91660295 -50611149 - L1PB4 LINE L1 0 6156 5769 292 111 0 79 chr9 91660285 91660348 -50611096 - L1P5 LINE L1 -330 5826 5769 * 793 244 26 0 chr9 91660347 91660540 -50610904 - L1PB4 LINE L1 0 6156 5959 1613 243 74 27 chr9 91660573 91661195 -50610249 - L1ME1 LINE L1 -3299 3083 2433 1734 294 64 11 chr9 91661224 91661863 -50609581 + L1MEc LINE L1 45 717 -5679 721 257 47 87 chr9 91661857 91662308 -50609136 + L1MEc LINE L1 1403 1835 -4561 * 2873 225 12 19 chr9 91662335 91662984 -50608460 - L1MD1 LINE L1 -12 6230 5586 1163 189 33 25 chr9 91662984 91663227 -50608217 - MSTB1 LTR MaLR 0 432 188 7551 64 6 0 chr9 91663240 91664721 -50606723 - L1PA8 LINE L1 -7 6165 4681 632 200 58 25 chr9 91664732 91665000 -50606444 - L1ME1 LINE L1 -381 6026 1116 * 1991 222 37 29 chr9 91664994 91665583 -50605861 - L1 LINE L1 -914 5296 4703 716 264 53 17 chr9 91665570 91665869 -50605575 - L1MDa LINE L1 -3290 3250 2941 * 44572 47 1 0 chr9 91665869 91671767 -50599677 + L1PA4 LINE L1 1 5906 -249 1899 246 40 30 chr9 91671766 91672408 -50599036 - L1MDa LINE L1 -4584 1887 1239 * 670 313 14 52 chr9 91672721 91673012 -50598432 - L1MDa LINE L1 -5611 850 571 * 2617 252 92 35 chr9 91673008 91673941 -50597503 - L1M4 LINE L1 -844 5302 4297 1235 246 96 6 chr9 91673941 91674254 -50597190 + MER2 DNA MER2_type 4 344 0 2617 252 92 35 chr9 91674254 91674402 -50597042 - L1M4 LINE L1 -1849 4297 4159 1528 236 29 3 chr9 91674395 91674743 -50596701 - L1MDa LINE L1 -6143 397 41 * 2211 119 0 3 chr9 91675000 91675302 -50596142 + AluSc SINE Alu 1 301 -8 339 228 110 44 chr9 91675601 91675737 -50595707 + MLT1J LTR MaLR 224 368 -143 2292 109 0 0 chr9 91676083 91676387 -50595057 + AluSg SINE Alu 1 304 -6 1670 149 28 49 chr9 91677215 91677354 -50594090 + AluSx SINE Alu 1 141 -174 2277 123 0 0 chr9 91677354 91677664 -50593780 + AluSx SINE Alu 3 312 0 1670 149 28 49 chr9 91677664 91677845 -50593599 + AluSx SINE Alu 141 315 0 2403 64 7 3 chr9 91678919 91679215 -50592229 + AluY SINE Alu 1 297 -14 2113 108 0 54 chr9 91679984 91680299 -50591145 - AluSx SINE Alu -14 298 1 678 238 14 0 chr9 91680348 91680495 -50590949 + MLT1J2 LTR MaLR 1 149 -301 2432 70 0 7 chr9 91680568 91680867 -50590577 + AluY SINE Alu 1 297 -14 2327 100 0 3 chr9 91680964 91681273 -50590171 + AluSg SINE Alu 1 308 -2 246 274 0 14 chr9 91681290 91681363 -50590081 + MLT1I LTR MaLR 323 394 -15 6187 122 36 25 chr9 91681397 91682874 -50588570 - L1PA14 LINE L1 -1 6160 4702 1615 138 93 28 chr9 91682874 91683163 -50588281 - AluSx SINE Alu 0 312 5 6187 122 36 25 chr9 91683163 91683333 -50588111 - L1PA14 LINE L1 -1459 4702 4491 2107 134 7 0 chr9 91683333 91683638 -50587806 - AluSg SINE Alu -3 307 1 6187 122 36 25 chr9 91683638 91683753 -50587691 - L1PA14 LINE L1 -1670 4491 4379 661 267 4 6 chr9 91683791 91684017 -50587427 + L1MA4 LINE L1 5938 6162 -138 2076 127 3 3 chr9 91684064 91684372 -50587072 - AluSp SINE Alu -5 308 1 3054 231 27 39 chr9 91684414 91685406 -50586038 + L1MB3 LINE L1 4818 5820 -363 2019 111 4 4 chr9 91685406 91685685 -50585759 + AluSx SINE Alu 1 279 -33 203 0 37 0 chr9 91685691 91685718 -50585726 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 3054 231 27 39 chr9 91685718 91685819 -50585625 + L1MB3 LINE L1 5825 5926 -257 1950 158 0 0 chr9 91685819 91686123 -50585321 + AluSx SINE Alu 1 304 -8 3054 231 27 39 chr9 91686123 91686373 -50585071 + L1MB3 LINE L1 5926 6153 -30 212 158 0 0 chr9 91687151 91687189 -50584255 + (ATG)n Simple_repeat Simple_repeat 3 40 0 253 332 56 23 chr9 91687208 91687422 -50584022 - MIR SINE MIR -10 252 32 2172 109 0 6 chr9 91687821 91688133 -50583311 + AluSg SINE Alu 1 310 0 194 310 44 26 chr9 91688528 91688641 -50582803 + L2 LINE L2 3158 3272 0 2111 106 7 7 chr9 91688706 91689009 -50582435 - AluSq SINE Alu -10 303 1 1083 237 249 28 chr9 91690706 91693047 -50578397 - SATR1 Satellite Satellite -4 2859 1 1679 218 101 38 chr9 91693259 91694536 -50576908 - SATR1 Satellite Satellite 0 1357 1 256 230 18 48 chr9 91694630 91694795 -50576649 + (TTA)n Simple_repeat Simple_repeat 2 161 0 31 68 0 0 chr9 91694847 91694906 -50576538 + AT_rich Low_complexity Low_complexity 1 59 0 2162 192 103 14 chr9 91694906 91696969 -50574475 - SATR1 Satellite Satellite -1 2245 1 23 0 0 0 chr9 91697062 91697085 -50574359 + AT_rich Low_complexity Low_complexity 1 23 0 356 180 7 58 chr9 91697128 91697267 -50574177 + (TTA)n Simple_repeat Simple_repeat 1 132 0 29670 90 11 12 chr9 91697321 91701383 -50570061 + HERVE LTR ERV1 1108 5164 -2649 2299 173 113 5 chr9 91701384 91702852 -50568592 - SATR1 Satellite Satellite 0 1625 1 2034 185 75 56 chr9 91702883 91703675 -50567769 - SATR1 Satellite Satellite -2 807 1 1294 205 222 37 chr9 91703712 91704952 -50566492 - SATR1 Satellite Satellite -1 1470 1 1338 123 36 14 chr9 91704954 91705173 -50566271 - AluSq SINE Alu -89 224 1 730 242 40 0 chr9 91707071 91707269 -50564175 + MER6B DNA MER2_type 5 210 0 328 235 35 0 chr9 91707372 91707457 -50563987 - MER5B DNA MER1_type -4 174 87 192 40 0 0 chr9 91707477 91707502 -50563942 + (T)n Simple_repeat Simple_repeat 1 25 0 2063 121 0 52 chr9 91707686 91708016 -50563428 - AluSp SINE Alu 0 313 1 332 206 123 65 chr9 91708016 91708163 -50563281 - HsTC2 DNA Tc2 -112 1786 1628 825 175 11 33 chr9 91708205 91708388 -50563056 + L1MA4 LINE L1 5771 5949 -351 1631 158 0 4 chr9 91708389 91708649 -50562795 + AluSx SINE Alu 1 259 -53 7375 173 25 10 chr9 91708665 91710061 -50561383 - L1P LINE L1 -1774 4372 2956 5695 125 45 10 chr9 91710526 91711398 -50560046 + MER49 LTR ERV1 1 902 -21 243 0 0 0 chr9 91711447 91711474 -50559970 + (T)n Simple_repeat Simple_repeat 1 27 0 2350 67 0 35 chr9 91711558 91711872 -50559572 + AluY SINE Alu 1 303 -8 2175 141 0 0 chr9 91713058 91713370 -50558074 - AluSx SINE Alu 0 312 1 1804 130 0 8 chr9 91716035 91716288 -50555156 + AluSx SINE Alu 1 251 -61 315 320 67 26 chr9 91716390 91716584 -50554860 - L1M3d LINE L1 -5014 1289 1088 454 306 17 78 chr9 91716900 91717194 -50554250 - L1M3d LINE L1 -5610 693 418 383 316 73 38 chr9 91717190 91717585 -50553859 - L1M4 LINE L1 -839 5307 4899 * 23 0 0 0 chr9 91717774 91717797 -50553647 + AT_rich Low_complexity Low_complexity 1 23 0 288 197 7 58 chr9 91717840 91717977 -50553467 + (TTA)n Simple_repeat Simple_repeat 3 132 0 6921 125 4 7 chr9 91718033 91719086 -50552358 + HERVE LTR ERV1 1108 2157 -5656 883 239 55 55 chr9 91720400 91720764 -50550680 + MLT1A1 LTR MaLR 1 387 -9 23 33 0 0 chr9 91721167 91721197 -50550247 + AT_rich Low_complexity Low_complexity 1 30 0 633 314 98 38 chr9 91721717 91722206 -50549238 + L2 LINE L2 2795 3313 0 231 324 57 0 chr9 91722375 91722480 -50548964 - L1MDa LINE L1 -3360 3180 3070 1462 234 121 74 chr9 91722743 91723705 -50547739 - SATR1 Satellite Satellite -2 1008 1 1058 203 242 26 chr9 91723718 91724098 -50547346 - SATR1 Satellite Satellite -2 468 7 929 286 48 6 chr9 91724229 91724540 -50546904 - L1M3d LINE L1 -6053 331 8 863 335 81 37 chr9 91726798 91727797 -50543647 + L2 LINE L2 311 1353 -1961 582 221 134 36 chr9 91727801 91728108 -50543336 + MLT1A1 LTR MaLR 1 339 -26 21 0 0 0 chr9 91728237 91728258 -50543186 + AT_rich Low_complexity Low_complexity 1 21 0 301 351 24 72 chr9 91729090 91729341 -50542103 + HAL1 LINE L1 776 1014 -1493 416 287 102 23 chr9 91729342 91729558 -50541886 + HAL1 LINE L1 1734 1966 -541 247 259 37 12 chr9 91729624 91729705 -50541739 - MLT1F LTR MaLR -8 534 452 1241 225 0 3 chr9 91730211 91730495 -50540949 - AluSc SINE Alu -12 297 15 1016 290 24 6 chr9 91730775 91731116 -50540328 + L1MDa LINE L1 51 397 -6143 239 306 90 8 chr9 91731109 91731243 -50540201 + L1M4 LINE L1 4159 4303 -1843 * 878 293 95 0 chr9 91731258 91731562 -50539882 - MER2 DNA MER2_type 0 345 13 1048 249 74 28 chr9 91731857 91732250 -50539194 - L1MDa LINE L1 -4633 1907 1497 2534 202 36 58 chr9 91732250 91733037 -50538407 + LTR5 LTR ERVK 1 769 -200 611 175 84 66 chr9 91733103 91733269 -50538175 + LTR5 LTR ERVK 787 955 -14 269 158 35 0 chr9 91733371 91733428 -50538016 + GA-rich Low_complexity Low_complexity 3 61 0 2280 99 0 3 chr9 91735333 91735626 -50535818 - AluSx SINE Alu -20 292 1 368 308 142 19 chr9 91736388 91736599 -50534845 + L2 LINE L2 2808 3044 -269 570 294 44 10 chr9 91736613 91736817 -50534627 + MLT2F LTR ERVL 4 214 -449 503 344 92 0 chr9 91736866 91737183 -50534261 + MLT2F LTR ERVL 301 646 -17 513 299 34 63 chr9 91737201 91737269 -50534175 + L2 LINE L2 3053 3121 -192 2425 89 0 9 chr9 91737269 91737585 -50533859 - AluSq SINE Alu 0 313 1 513 299 34 63 chr9 91737585 91737784 -50533660 + L2 LINE L2 3121 3312 -1 25 51 0 0 chr9 91738173 91738212 -50533232 + AT_rich Low_complexity Low_complexity 1 39 0 240 240 50 10 chr9 91738449 91738549 -50532895 - L1M4 LINE L1 -3663 2483 2380 206 239 0 30 chr9 91738732 91738799 -50532645 + T-rich Low_complexity Low_complexity 3 67 0 22 0 0 0 chr9 91739243 91739265 -50532179 + AT_rich Low_complexity Low_complexity 1 22 0 257 316 127 36 chr9 91739581 91739726 -50531718 - L2 LINE L2 0 3313 3183 426 114 0 0 chr9 91739726 91739796 -50531648 + (CA)n Simple_repeat Simple_repeat 2 71 0 257 316 127 36 chr9 91739796 91739925 -50531519 - L2 LINE L2 -130 3183 3014 * 1565 305 48 45 chr9 91739899 91740736 -50530708 - L2 LINE L2 -1045 2269 1431 564 320 152 46 chr9 91740736 91741296 -50530148 - L2 LINE L2 -2055 1259 641 2271 105 3 3 chr9 91741298 91741602 -50529842 + AluSg SINE Alu 3 306 -4 298 253 47 27 chr9 91742038 91742188 -50529256 - L1ME3A LINE L1 -251 5919 5767 295 213 101 144 chr9 91742171 91742876 -50528568 - L1M1 LINE L1 -694 5468 4828 * 1721 232 88 32 chr9 91742984 91743400 -50528044 - L1ME3A LINE L1 -1316 4830 4360 183 80 0 0 chr9 91743400 91743425 -50528019 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1721 232 88 32 chr9 91743425 91743689 -50527755 - L1ME3A LINE L1 -1786 4360 4112 2488 123 20 71 chr9 91743692 91744329 -50527115 + MER4B LTR ERV1 4 778 -1 756 236 63 20 chr9 91744329 91744583 -50526861 - L1ME3A LINE L1 -2032 4114 3850 350 343 42 14 chr9 91745107 91745320 -50526124 - L1ME LINE L1 -589 5577 5359 416 271 156 24 chr9 91745332 91745448 -50525996 - L1ME LINE L1 -817 5329 5230 2373 70 10 0 chr9 91745448 91745747 -50525697 - AluSx SINE Alu -6 306 5 416 271 156 24 chr9 91745747 91745925 -50525519 - L1ME LINE L1 -916 5230 4996 2167 103 0 3 chr9 91746627 91746929 -50524515 - AluSx SINE Alu 0 301 1 2177 99 7 0 chr9 91747434 91747743 -50523701 - AluSp SINE Alu 0 311 1 2117 120 10 0 chr9 91747910 91748202 -50523242 - AluSx SINE Alu -15 297 3 216 293 40 0 chr9 91748512 91748587 -50522857 - MIR SINE MIR -72 190 113 523 290 35 78 chr9 91748856 91749087 -50522357 - L2 LINE L2 -1282 2032 1812 1356 152 34 0 chr9 91749109 91749346 -50522098 + Tigger1 DNA MER2_type 1 245 -2173 2298 94 7 0 chr9 91749445 91749743 -50521701 - AluY SINE Alu -1 310 11 332 327 71 24 chr9 91750455 91750623 -50520821 + MIR SINE MIR 16 191 -71 361 338 26 100 chr9 91751186 91751577 -50519867 - L2 LINE L2 -36 3236 2875 1397 172 70 184 chr9 91752513 91753288 -50518156 - LTR8A LTR ERV1 -8 719 34 3172 319 146 21 chr9 91753472 91755194 -50516250 + L2 LINE L2 675 2768 -545 2550 60 0 3 chr9 91755194 91755495 -50515949 - AluY SINE Alu -11 300 1 3172 319 146 21 chr9 91755495 91756046 -50515398 + L2 LINE L2 2768 3249 -64 816 205 35 0 chr9 91756791 91756962 -50514482 + L1MDa LINE L1 30 206 -6334 815 138 18 6 chr9 91756969 91757136 -50514308 + CT-rich Low_complexity Low_complexity 3 171 0 1043 214 94 37 chr9 91757138 91757437 -50514007 + L1MDa LINE L1 202 517 -6023 483 256 18 62 chr9 91757443 91757716 -50513728 + L1M4 LINE L1 4519 4779 -1367 2008 60 7 3 chr9 91757726 91758009 -50513435 - L1P LINE L1 -4114 2032 1749 27 0 0 0 chr9 91758016 91758043 -50513401 + AT_rich Low_complexity Low_complexity 1 27 0 403 231 35 131 chr9 91758050 91758282 -50513162 + L1M4 LINE L1 4786 4982 -1164 201 74 0 0 chr9 91758282 91758309 -50513135 + (CA)n Simple_repeat Simple_repeat 2 28 0 403 231 35 131 chr9 91758309 91758388 -50513056 + L1M4 LINE L1 4982 5067 -1079 955 244 77 45 chr9 91758849 91759201 -50512243 + MLT1A2 LTR MaLR 1 363 -11 331 300 12 0 chr9 91760278 91760358 -50511086 - MIR3 SINE MIR -6 202 122 198 191 0 0 chr9 91760372 91760414 -50511030 + GA-rich Low_complexity Low_complexity 2 43 0 370 310 28 28 chr9 91760468 91760613 -50510831 - L1ME3A LINE L1 -17 6153 6009 1808 177 65 43 chr9 91760613 91761031 -50510413 + MSTB1 LTR MaLR 1 427 -5 420 281 47 17 chr9 91761134 91761369 -50510075 - L1ME3A LINE L1 -213 5951 5710 1218 132 34 0 chr9 91761520 91761724 -50509720 - L1PA15 LINE L1 0 6165 5955 430 287 57 48 chr9 91762794 91763003 -50508441 - L2 LINE L2 -4 3309 3099 346 315 54 5 chr9 91763205 91763389 -50508055 + LTR16B LTR ERVL 185 377 -87 216 0 0 0 chr9 91763397 91763421 -50508023 + (TG)n Simple_repeat Simple_repeat 1 24 0 189 302 0 0 chr9 91764352 91764405 -50507039 - L2 LINE L2 -306 2966 2914 256 341 32 0 chr9 91765293 91765416 -50506028 - LTR67 LTR ERVL 0 557 431 240 319 14 0 chr9 91765503 91765575 -50505869 - MER5B DNA MER1_type -105 73 1 3608 141 37 41 chr9 91765812 91766126 -50505318 - Tigger3(Golem) DNA MER2_type 0 3028 2714 2420 90 0 6 chr9 91766126 91766438 -50505006 + AluSg SINE Alu 1 310 0 3608 141 37 41 chr9 91766438 91766874 -50504570 - Tigger3(Golem) DNA MER2_type -314 2714 2281 430 257 0 37 chr9 91766871 91766980 -50504464 - Tigger3(Golem) DNA MER2_type -2921 108 4 * 225 65 0 0 chr9 91767007 91767038 -50504406 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 316 20 20 chr9 91767110 91767208 -50504236 - LTR67 LTR ERVL -363 194 97 4022 215 123 33 chr9 91767390 91769417 -50502027 + L1MCa LINE L1 133 2281 -4283 1151 81 243 0 chr9 91769417 91769602 -50501842 - MER30 DNA MER1_type 0 230 1 4022 215 123 33 chr9 91769602 91769957 -50501487 + L1MCa LINE L1 2281 2603 -3961 7643 216 57 28 chr9 91770021 91770437 -50501007 + L1MB2 LINE L1 3045 3447 -3142 2187 142 0 0 chr9 91770437 91770747 -50500697 + AluSx SINE Alu 3 312 0 7643 216 57 28 chr9 91770747 91773109 -50498335 + L1MB2 LINE L1 3447 5955 -634 2042 96 41 4 chr9 91773109 91773408 -50498036 + AluSx SINE Alu 1 309 0 7643 216 57 28 chr9 91773408 91774060 -50497384 + L1MB2 LINE L1 5955 6587 -2 4249 220 46 37 chr9 91774049 91775091 -50496353 + L1MB8 LINE L1 3833 4865 -1313 * 2243 115 0 0 chr9 91775091 91775395 -50496049 - AluSx SINE Alu -8 304 1 4249 220 46 37 chr9 91775395 91776678 -50494766 + L1MB8 LINE L1 4865 6178 0 29 0 0 0 chr9 91777157 91777186 -50494258 + AT_rich Low_complexity Low_complexity 1 29 0 2244 87 7 0 chr9 91777206 91777495 -50493949 - AluSg SINE Alu -19 291 1 488 158 178 5 chr9 91777764 91777961 -50493483 + Charlie5 DNA MER1_type 3 2533 -79 21 36 0 0 chr9 91777961 91777989 -50493455 + AT_rich Low_complexity Low_complexity 1 28 0 247 338 61 47 chr9 91778057 91778270 -50493174 - L2 LINE L2 -84 3229 3014 285 313 57 24 chr9 91778443 91778654 -50492790 - HERVL LTR ERVL -2156 3498 3281 829 288 56 31 chr9 91779432 91779911 -50491533 - L1M4 LINE L1 -1717 4429 3939 189 0 0 0 chr9 91779911 91779932 -50491512 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 3946 161 34 42 chr9 91779943 91780734 -50490710 + LTR1 LTR ERV1 1 785 0 21 71 0 0 chr9 91781117 91781159 -50490285 + AT_rich Low_complexity Low_complexity 1 42 0 229 296 148 9 chr9 91781388 91781496 -50489948 - MER5B DNA MER1_type 0 178 56 1924 212 59 13 chr9 91782747 91783204 -50488240 + MLT2B1 LTR ERVL 1 478 -42 236 250 29 43 chr9 91783363 91783378 -50488066 + A-rich Low_complexity Low_complexity 1 15 -123 2221 116 0 13 chr9 91783378 91783689 -50487755 + AluSg SINE Alu 1 307 -3 236 250 29 43 chr9 91783689 91783813 -50487631 + A-rich Low_complexity Low_complexity 15 138 0 2124 128 7 0 chr9 91784265 91784570 -50486874 - AluSx SINE Alu -5 307 1 3223 185 76 41 chr9 91784838 91785517 -50485927 - L1MB8 LINE L1 -5 6173 5454 205 50 25 25 chr9 91785517 91785557 -50485887 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3223 185 76 41 chr9 91785557 91785762 -50485682 - L1MB8 LINE L1 -724 5454 5258 708 236 38 0 chr9 91785768 91785980 -50485464 + L1M4 LINE L1 2715 2934 -3212 22 35 0 0 chr9 91786141 91786170 -50485274 + AT_rich Low_complexity Low_complexity 1 29 0 668 179 64 23 chr9 91786174 91786338 -50485106 + MLT1E3 LTR MaLR 382 609 -15 350 336 141 42 chr9 91786551 91786976 -50484468 - L3 LINE CR1 -11 1566 1100 244 214 92 82 chr9 91787181 91787279 -50484165 - L3 LINE CR1 -7 1570 1472 732 318 41 21 chr9 91788164 91788648 -50482796 - L1ME LINE L1 -350 5820 5327 681 192 34 0 chr9 91788709 91788855 -50482589 - MLT1E3 LTR MaLR -15 609 459 527 194 86 21 chr9 91788865 91789051 -50482393 + MER114 LTR ERV 125 322 -326 2370 97 0 25 chr9 91789784 91790105 -50481339 + AluSq SINE Alu 1 313 0 272 278 40 34 chr9 91791218 91791394 -50480050 - L1ME LINE L1 -3005 3141 2965 2507 116 3 0 chr9 91792540 91792919 -50478525 - L1PA8 LINE L1 -2 6170 5791 657 248 47 75 chr9 91794912 91795232 -50476212 + MLT1H1 LTR MaLR 1 276 -279 374 261 101 7 chr9 91795304 91795442 -50476002 + MLT1H1 LTR MaLR 445 595 0 187 282 65 105 chr9 91796509 91796803 -50474641 + L2 LINE L2 238 519 -2795 219 368 32 16 chr9 91797056 91797181 -50474263 - L2 LINE L2 -563 2751 2625 2395 74 6 19 chr9 91797199 91797510 -50473934 - AluSg SINE Alu -3 307 1 453 181 63 31 chr9 91797666 91797793 -50473651 - L1MA9 LINE L1 -2 6310 6180 384 285 56 50 chr9 91799204 91799383 -50472061 + MIR SINE MIR 52 231 -31 393 266 9 9 chr9 91799391 91799504 -50471940 + MLT2F LTR ERVL 7 119 -544 506 217 11 72 chr9 91799507 91799687 -50471757 + MLT1E3 LTR MaLR 39 207 -417 2293 111 3 9 chr9 91800049 91800364 -50471080 - AluSp SINE Alu 0 313 1 203 279 46 0 chr9 91800530 91800600 -50470844 + MIR SINE MIR 45 116 -106 2304 97 3 0 chr9 91801958 91802258 -50469186 + AluY SINE Alu 1 301 -10 307 294 7 56 chr9 91802479 91802622 -50468822 - HAL1 LINE L1 -184 2323 2188 285 75 0 0 chr9 91803138 91803178 -50468266 + (TCTCTG)n Simple_repeat Simple_repeat 5 44 0 1710 176 3 10 chr9 91803415 91803705 -50467739 + AluJo SINE Alu 1 288 -24 1224 151 0 0 chr9 91803725 91803903 -50467541 - AluSp SINE Alu -19 294 117 1059 103 0 0 chr9 91803903 91804039 -50467405 + AluSq/x SINE Alu 1 136 -177 496 241 26 47 chr9 91804091 91804282 -50467162 + LTR37B LTR ERV1 276 462 -6 2012 139 35 35 chr9 91804589 91804964 -50466480 + THE1C LTR MaLR 1 375 0 598 271 107 32 chr9 91805076 91805263 -50466181 - HAL1 LINE L1 -967 1540 1368 1831 179 7 0 chr9 91805263 91805570 -50465874 - AluJb SINE Alu -3 309 1 598 271 107 32 chr9 91805570 91806038 -50465406 - HAL1 LINE L1 -1139 1368 836 2086 76 0 138 chr9 91806139 91806495 -50464949 - AluSg1 SINE Alu -2 307 1 312 237 76 46 chr9 91806501 91806632 -50464812 - HAL1 LINE L1 -2268 239 105 2205 103 0 0 chr9 91806962 91807269 -50464175 - AluSg SINE Alu 0 307 1 2108 129 6 3 chr9 91807474 91807785 -50463659 + AluSx SINE Alu 1 312 0 1848 109 0 0 chr9 91809350 91809588 -50461856 + AluSx SINE Alu 54 291 -21 204 232 18 18 chr9 91810786 91810842 -50460602 - MIR SINE MIR -70 138 83 450 223 39 0 chr9 91811017 91811120 -50460324 + MLT1A1 LTR MaLR 1 107 -258 1399 257 84 77 chr9 91811153 91811861 -50459583 + L1M4 LINE L1 4187 4908 -1238 2225 101 0 0 chr9 91811861 91812148 -50459296 - AluSq SINE Alu -26 287 1 1399 257 84 77 chr9 91812148 91812577 -50458867 + L1M4 LINE L1 4908 5332 -814 992 67 0 0 chr9 91812577 91812696 -50458748 + AluSq/x SINE Alu 1 119 -193 2456 223 66 12 chr9 91812696 91813969 -50457475 - L1MB7 LINE L1 -162 6022 4750 2823 215 72 57 chr9 91813969 91814950 -50456494 - L1MD3 LINE L1 -745 5401 4436 2352 93 0 3 chr9 91814950 91815260 -50456184 - AluSg1 SINE Alu 0 309 1 2823 215 72 57 chr9 91815260 91815704 -50455740 - L1MD3 LINE L1 -1710 4436 4724 2184 103 3 26 chr9 91815704 91816016 -50455428 - AluSx SINE Alu -7 305 1 2823 215 72 57 chr9 91816016 91816096 -50455348 - L1MD3 LINE L1 -1421 4725 4648 2248 88 17 3 chr9 91816240 91816534 -50454910 - AluSg SINE Alu -12 298 1 270 0 0 0 chr9 91816801 91816831 -50454613 + (CA)n Simple_repeat Simple_repeat 2 31 0 2307 107 0 0 chr9 91817634 91817934 -50453510 - AluSg SINE Alu -10 300 1 2624 199 63 53 chr9 91818105 91819068 -50452376 - L1MB7 LINE L1 -16 6168 5194 615 241 7 0 chr9 91819771 91819912 -50451532 - L1MD2 LINE L1 -56 6303 6162 213 189 57 38 chr9 91820042 91820095 -50451349 - L2 LINE L2 -1899 1415 1362 1927 89 11 15 chr9 91820205 91820499 -50450945 - AluSx SINE Alu 0 312 21 211 343 157 14 chr9 91820918 91821058 -50450386 + MIR SINE MIR 30 188 -74 26 93 0 0 chr9 91821702 91821777 -50449667 + AT_rich Low_complexity Low_complexity 1 75 0 5417 81 13 18 chr9 91821951 91822721 -50448723 + MER4E LTR ERV1 1 766 0 3193 196 13 5 chr9 91822820 91823437 -50448007 + LTR26E LTR ERV1 1 622 0 217 303 15 0 chr9 91823576 91823642 -50447802 + L2 LINE L2 3246 3312 -1 344 212 24 0 chr9 91823650 91823735 -50447709 + L1MEd LINE L1 440 526 -6028 3827 279 85 31 chr9 91823739 91823943 -50447501 + L1M4 LINE L1 349 541 -6055 275 0 0 28 chr9 91823943 91823979 -50447465 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3827 279 85 31 chr9 91823979 91829012 -50442432 + L1M4 LINE L1 541 5893 -703 297 276 103 50 chr9 91829164 91829403 -50442041 - MERVL LTR ERVL -1378 4107 3851 900 195 152 40 chr9 91829403 91829731 -50441713 + MLT1A1 LTR MaLR 1 365 0 297 276 103 50 chr9 91829731 91829752 -50441692 - MERVL LTR ERVL -1634 3851 3833 264 214 0 112 chr9 91829920 91829953 -50441491 + MIR3 SINE MIR 84 119 -89 2095 176 70 0 chr9 91829953 91830356 -50441088 - MSTB1 LTR MaLR 0 432 2 264 214 0 112 chr9 91830356 91830411 -50441033 + MIR3 SINE MIR 119 162 -46 2008 132 7 23 chr9 91830589 91830893 -50440551 - AluSx SINE Alu -13 299 1 247 366 10 0 chr9 91830981 91831082 -50440362 - MIR SINE MIR 0 262 161 301 265 77 8 chr9 91831308 91831425 -50440019 - LTR16C LTR ERVL -278 213 89 315 299 11 0 chr9 91831521 91831608 -50439836 - MIR SINE MIR -152 110 23 751 301 73 10 chr9 91832907 91833209 -50438235 + LTR16A LTR ERVL 123 443 -7 2143 119 10 0 chr9 91833822 91834117 -50437327 - AluSx SINE Alu -14 298 1 23 33 0 0 chr9 91834637 91834667 -50436777 + AT_rich Low_complexity Low_complexity 1 30 0 242 296 14 70 chr9 91835214 91835356 -50436088 - HAL1b LINE L1 -921 427 294 270 0 0 0 chr9 91835490 91835520 -50435924 + (T)n Simple_repeat Simple_repeat 1 30 0 2215 107 7 0 chr9 91835854 91836152 -50435292 - AluSg SINE Alu -10 300 1 33 25 0 0 chr9 91837843 91837883 -50433561 + AT_rich Low_complexity Low_complexity 1 40 0 779 330 96 19 chr9 91838090 91838773 -50432671 + L1ME1 LINE L1 62 899 -5524 1301 269 105 41 chr9 91838775 91839822 -50431622 + L1ME1 LINE L1 957 2093 -4848 459 320 34 51 chr9 91839829 91840179 -50431265 + L1PA15 LINE L1 7 350 -7231 10702 201 12 0 chr9 91841058 91844192 -50427252 + L1PA15 LINE L1 4415 7596 -7 6298 248 99 32 chr9 91844193 91848486 -50422958 + L1ME1 LINE L1 2233 6811 -150 285 335 101 6 chr9 91849697 91849855 -50421589 + MIR3 SINE MIR 32 204 -4 35 0 0 0 chr9 91850081 91850116 -50421328 + AT_rich Low_complexity Low_complexity 1 35 0 3607 217 39 15 chr9 91850181 91851052 -50420392 - L1MD1 LINE L1 0 6636 5745 2214 255 73 8 chr9 91851058 91851893 -50419551 - L1MD1 LINE L1 -1432 5108 4220 2264 254 45 18 chr9 91851896 91852754 -50418690 - L1MD1 LINE L1 -2586 3954 3073 2326 153 65 2 chr9 91852756 91853168 -50418276 - Tigger2 DNA MER2_type -1 2717 2280 363 193 0 0 chr9 91853169 91853226 -50418218 - Tigger2 DNA MER2_type -2661 57 1 750 264 62 46 chr9 91853231 91853603 -50417841 - L1MD1 LINE L1 -3468 3072 2688 1350 256 74 59 chr9 91853603 91854115 -50417329 + MLT2B1 LTR ERVL 1 520 0 750 264 62 46 chr9 91854115 91854262 -50417182 - L1MD1 LINE L1 -3852 2688 2545 1269 178 115 11 chr9 91854263 91854600 -50416844 + MSTA LTR MaLR 1 364 0 3218 229 88 48 chr9 91854612 91856082 -50415362 - L1MD1 LINE L1 -4002 2538 1010 2293 105 0 0 chr9 91856086 91856380 -50415064 - AluSg1 SINE Alu -15 294 1 1521 46 0 0 chr9 91857317 91857491 -50413953 + AluY SINE Alu 1 174 -137 466 308 72 49 chr9 91857516 91857945 -50413499 - L1M4 LINE L1 -1366 4780 4342 1249 65 0 0 chr9 91857981 91858134 -50413310 - AluSg/x SINE Alu 0 312 160 244 306 0 0 chr9 91858809 91858871 -50412573 + (TATG)n Simple_repeat Simple_repeat 3 64 0 5655 258 61 21 chr9 91859656 91861643 -50409801 + L1M4b LINE L1 16 2083 -4876 511 259 7 0 chr9 91861682 91861829 -50409615 + L1M4b LINE L1 2365 2512 -4626 14265 144 24 5 chr9 91862004 91864373 -50407071 + Tigger1 DNA MER2_type 1 2414 -4 3436 250 58 49 chr9 91864433 91865099 -50406345 + L1M4b LINE L1 2476 3134 -3823 2013 106 0 0 chr9 91865099 91865364 -50406080 + AluSq SINE Alu 32 296 -17 3436 250 58 49 chr9 91865364 91865999 -50405445 + L1M4b LINE L1 3134 3762 -3195 243 0 0 0 chr9 91865999 91866026 -50405418 + (TA)n Simple_repeat Simple_repeat 2 28 0 1627 113 4 4 chr9 91866027 91866256 -50405188 - AluSg/x SINE Alu -5 305 77 3436 250 58 49 chr9 91866256 91866583 -50404861 + L1M4b LINE L1 3762 4085 -2872 2749 22 0 3 chr9 91866583 91866894 -50404550 + AluY SINE Alu 1 310 -1 3436 250 58 49 chr9 91866894 91867254 -50404190 + L1M4b LINE L1 4085 4443 -2514 228 317 67 29 chr9 91867699 91867803 -50403641 + L2 LINE L2 3162 3269 -3 183 321 107 24 chr9 91869223 91869391 -50402053 + L2 LINE L2 2576 2757 -557 319 311 68 20 chr9 91869492 91869640 -50401804 - L1ME4a LINE L1 0 6121 5967 1562 135 56 16 chr9 91869850 91870102 -50401342 - AluJb SINE Alu -50 262 1 520 214 37 121 chr9 91870159 91870374 -50401070 - L2 LINE L2 -57 3256 3060 682 166 0 41 chr9 91870533 91870678 -50400766 - AluSc SINE Alu -166 143 5 433 234 76 107 chr9 91870728 91871018 -50400426 - LTR37B LTR ERV1 -179 289 9 2392 72 3 3 chr9 91871675 91871981 -50399463 - AluY SINE Alu -5 306 1 462 149 45 0 chr9 91872108 91872196 -50399248 + MER49 LTR ERV1 1 92 -505 1159 180 15 0 chr9 91872197 91872397 -50399047 - MER49 LTR ERV1 -720 203 1 448 181 36 0 chr9 91872416 91872499 -50398945 + MER49 LTR ERV1 209 294 -629 * 584 143 0 12 chr9 91872484 91872602 -50398842 + MER4E LTR ERV1 61 283 -615 * 1599 213 28 14 chr9 91872600 91872952 -50398492 + MER4D LTR ERV1 547 903 0 2289 93 10 7 chr9 91873534 91873835 -50397609 + AluSp SINE Alu 1 302 -11 1279 192 72 79 chr9 91874278 91874589 -50396855 - MER31B LTR ERV1 0 466 157 3510 109 13 133 chr9 91874589 91875109 -50396335 - MER4A LTR ERV1 0 664 260 2255 107 0 0 chr9 91875109 91875400 -50396044 + AluSq SINE Alu 1 291 -22 3510 109 13 133 chr9 91875400 91875633 -50395811 - MER4A LTR ERV1 -404 260 1 1279 192 72 79 chr9 91875633 91875790 -50395654 - MER31B LTR ERV1 -309 157 1 249 261 26 26 chr9 91876201 91876316 -50395128 + L1ME LINE L1 5465 5579 -583 216 225 0 38 chr9 91876889 91876969 -50394475 + A-rich Low_complexity Low_complexity 1 77 0 481 250 105 93 chr9 91877039 91877175 -50394269 - MIR SINE MIR -1 261 119 2310 62 24 0 chr9 91877175 91877463 -50393981 - AluY SINE Alu -13 298 4 481 250 105 93 chr9 91877463 91877574 -50393870 - MIR SINE MIR -143 119 11 1641 104 90 53 chr9 91877905 91878204 -50393240 + AluSx SINE Alu 1 310 -2 1733 260 105 30 chr9 91878386 91879479 -50391965 + L1MEc LINE L1 708 1882 -4514 3216 150 9 67 chr9 91879479 91879741 -50391703 + L1MA8 LINE L1 5520 5796 -495 2373 88 0 0 chr9 91879741 91880038 -50391406 + AluSc SINE Alu 1 297 -12 3216 150 9 67 chr9 91880038 91880463 -50390981 + L1MA8 LINE L1 5796 6167 -124 29 18 0 55 chr9 91880521 91880576 -50390868 + AT_rich Low_complexity Low_complexity 1 52 0 2651 191 122 27 chr9 91881923 91882736 -50388708 - MER106B DNA MER1_type -48 1011 122 1533 97 0 0 chr9 91882736 91882931 -50388513 - AluSq SINE Alu -116 197 3 195 139 0 0 chr9 91883607 91883643 -50387801 + (TAA)n Simple_repeat Simple_repeat 3 38 0 581 286 47 5 chr9 91883765 91883957 -50387487 + MIR SINE MIR 44 243 -19 220 373 124 15 chr9 91884601 91884802 -50386642 - MIR SINE MIR -34 228 6 2464 214 71 23 chr9 91886414 91887060 -50384384 - L1MD2 LINE L1 -55 6304 5628 900 302 31 14 chr9 91887082 91887503 -50383941 - L1MD2 LINE L1 -870 5276 4849 1745 299 63 57 chr9 91887507 91888295 -50383149 + L1MDb LINE L1 9 801 -5608 * 3244 248 60 38 chr9 91888290 91890117 -50381327 + L1MDb LINE L1 1532 3494 -2912 1782 150 6 57 chr9 91890149 91890463 -50380981 + AluJb SINE Alu 1 298 -14 4174 200 35 15 chr9 91890466 91891773 -50379671 + L1MB4 LINE L1 4849 6180 0 590 279 98 0 chr9 91891772 91892026 -50379418 - L1MD2 LINE L1 -1413 4733 4455 * 3718 51 2 7 chr9 91892103 91892553 -50378891 + LTR7 LTR ERV1 1 448 -2 16549 94 27 19 chr9 91892555 91895385 -50376059 + HERVH LTR ERV1 1 2987 -4726 904 140 7 0 chr9 91895379 91895529 -50375915 + HERVH LTR ERV1 3140 3290 -4423 * 3307 124 2 10 chr9 91895519 91896025 -50375419 + HERVH LTR ERV1 3492 3993 -3720 4431 139 3 1 chr9 91896027 91896688 -50374756 + HERVH LTR ERV1 4488 5149 -2564 1371 133 18 9 chr9 91896689 91896907 -50374537 + HERVH LTR ERV1 5600 5819 -1894 * 2431 78 67 13 chr9 91896905 91897277 -50374167 + HERVH LTR ERV1 7322 7713 0 3562 44 0 69 chr9 91897277 91897758 -50373686 + LTR7 LTR ERV1 1 448 -2 355 248 64 18 chr9 91897761 91897870 -50373574 - L1 LINE L1 -1759 4387 4274 1502 258 57 26 chr9 91897890 91898421 -50373023 - MER76 LTR ERV -124 564 18 2377 222 88 71 chr9 91898726 91899628 -50371816 - HERVL68 LTR ERVL -199 2838 1922 25 31 0 0 chr9 91899632 91899664 -50371780 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr9 91902377 91902406 -50369038 + AT_rich Low_complexity Low_complexity 1 29 0 245 272 97 0 chr9 91902658 91902761 -50368683 - MIR SINE MIR -84 178 66 256 221 21 42 chr9 91902774 91902869 -50368575 + L2 LINE L2 2592 2684 -630 227 185 31 108 chr9 91902916 91902981 -50368463 + LTR40a LTR ERVL 1 60 -459 348 245 198 63 chr9 91903184 91903437 -50368007 + LTR40a LTR ERVL 232 518 -1 982 293 97 28 chr9 91903444 91903995 -50367449 + L2 LINE L2 2722 3313 0 263 350 33 0 chr9 91904660 91904780 -50366664 + MIR SINE MIR 82 205 -57 1570 122 107 42 chr9 91905789 91906081 -50365363 + AluSg SINE Alu 3 311 0 461 222 13 46 chr9 91906445 91906598 -50364846 - Charlie5 DNA MER1_type 0 2624 2477 228 173 96 19 chr9 91906597 91906649 -50364795 - Charlie5 DNA MER1_type -2530 82 27 * 2525 123 18 67 chr9 91907170 91907618 -50363826 - LTR12 LTR ERV1 -234 480 55 271 211 0 0 chr9 91907660 91907712 -50363732 - LTR30 LTR ERV1 -670 52 1 232 287 11 11 chr9 91908703 91908790 -50362654 + (TA)n Simple_repeat Simple_repeat 1 87 0 622 267 43 27 chr9 91909814 91910001 -50361443 + MIR SINE MIR 14 203 -59 3292 191 110 42 chr9 91910711 91910842 -50360602 + MER106B DNA MER1_type 1 122 -937 1550 97 0 0 chr9 91910842 91911037 -50360407 + AluSq SINE Alu 1 195 -118 3292 191 110 42 chr9 91911037 91911852 -50359592 + MER106B DNA MER1_type 122 1011 -48 1434 121 50 50 chr9 91913135 91913433 -50358011 + MER1B DNA MER1_type 1 298 -41 21 36 0 0 chr9 91914032 91914060 -50357384 + AT_rich Low_complexity Low_complexity 1 28 0 27 73 0 0 chr9 91915305 91915360 -50356084 + AT_rich Low_complexity Low_complexity 1 55 0 333 123 15 0 chr9 91915392 91915457 -50355987 - L1MB4 LINE L1 -1 6179 6114 277 310 187 19 chr9 91915726 91915881 -50355563 - MIR SINE MIR -76 186 6 676 271 77 29 chr9 91915938 91916333 -50355111 + L1MC5 LINE L1 6490 6893 -915 449 243 82 68 chr9 91916390 91916670 -50354774 - L1MC5 LINE L1 -426 7535 7252 268 284 84 42 chr9 91916700 91916890 -50354554 - L1MC5 LINE L1 -854 7107 6910 227 315 0 22 chr9 91917324 91917413 -50354031 - HAL1b LINE L1 -718 630 544 338 316 72 40 chr9 91917556 91917834 -50353610 - HAL1b LINE L1 -1009 339 53 504 221 54 44 chr9 91917894 91918098 -50353346 + L1MCa LINE L1 1137 1342 -5084 12733 127 13 6 chr9 91918284 91920256 -50351188 - L1P LINE L1 -744 5402 3417 876 199 83 119 chr9 91920262 91920598 -50350846 - MLT1A1 LTR MaLR -38 327 4 386 283 128 41 chr9 91920636 91920855 -50350589 - MIR SINE MIR -2 260 23 25 0 0 0 chr9 91921079 91921104 -50350340 + AT_rich Low_complexity Low_complexity 1 25 0 1460 221 64 34 chr9 91921507 91921947 -50349497 + MER31B LTR ERV1 14 466 0 384 22 0 0 chr9 91922828 91922873 -50348571 + (TG)n Simple_repeat Simple_repeat 1 45 0 1955 112 90 0 chr9 91925201 91925478 -50345966 - AluSx SINE Alu -10 302 1 2392 79 0 0 chr9 91926290 91926580 -50344864 - AluY SINE Alu -21 290 1 795 253 16 0 chr9 91929162 91929348 -50342096 - MER5A DNA MER1_type 0 189 1 625 201 62 7 chr9 91930510 91930652 -50340792 - MER45R DNA AcHobo -2 1579 1430 239 167 17 17 chr9 91930652 91930712 -50340732 - MLT2B1 LTR ERVL -3 517 458 194 91 30 0 chr9 91930714 91930747 -50340697 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2700 107 27 3 chr9 91930749 91931115 -50340329 + THE1C LTR MaLR 1 375 0 630 235 110 30 chr9 91931137 91931389 -50340055 - MLT2B1 LTR ERVL -60 460 139 201 349 12 12 chr9 91931505 91931588 -50339856 - MIR3 SINE MIR -12 196 114 1615 199 3 10 chr9 91932031 91932322 -50339122 - MLT1A1 LTR MaLR 0 365 77 2272 96 0 10 chr9 91932322 91932625 -50338819 - AluSc SINE Alu -9 300 1 2378 104 17 158 chr9 91932625 91933145 -50338299 + MER4A LTR ERV1 218 664 0 1074 177 80 37 chr9 91933154 91933454 -50337990 + MER31B LTR ERV1 154 466 0 2300 93 10 7 chr9 91933897 91934198 -50337246 - AluSp SINE Alu -11 302 1 1637 213 28 14 chr9 91934780 91935132 -50336312 - MER4D LTR ERV1 0 903 547 601 143 0 12 chr9 91935130 91935248 -50336196 - MER4E LTR ERV1 -615 164 61 * 451 182 0 0 chr9 91935239 91935316 -50336128 - MER49 LTR ERV1 -638 285 209 * 1141 190 15 0 chr9 91935335 91935535 -50335909 + MER49 LTR ERV1 1 203 -720 469 149 45 0 chr9 91935536 91935624 -50335820 - MER49 LTR ERV1 -505 92 1 2413 72 3 3 chr9 91935751 91936057 -50335387 + AluY SINE Alu 1 306 -5 859 196 48 167 chr9 91936715 91937048 -50334396 + LTR37B LTR ERV1 9 380 -46 2237 57 60 0 chr9 91937048 91937331 -50334113 + AluY SINE Alu 1 300 -11 859 196 48 167 chr9 91937331 91937438 -50334006 + LTR37B LTR ERV1 380 354 -72 1752 161 3 24 chr9 91937438 91937730 -50333714 - AluJb SINE Alu -26 286 1 859 196 48 167 chr9 91937730 91937797 -50333647 + LTR37B LTR ERV1 353 426 0 355 372 23 0 chr9 91938221 91938350 -50333094 - MER5B DNA MER1_type -1 177 46 570 135 0 10 chr9 91938356 91938460 -50332984 - L1MA9 LINE L1 -22 6290 6188 209 326 10 31 chr9 91938494 91938592 -50332852 - MER5A DNA MER1_type -24 165 70 1933 148 64 31 chr9 91939289 91939648 -50331796 + THE1C LTR MaLR 5 375 0 249 247 0 0 chr9 91940145 91940226 -50331218 + (TA)n Simple_repeat Simple_repeat 1 81 0 245 301 48 3 chr9 91940244 91940417 -50331027 - L1ME2 LINE L1 -223 5947 5771 21 36 0 0 chr9 91940434 91940462 -50330982 + AT_rich Low_complexity Low_complexity 1 28 0 423 313 115 25 chr9 91940525 91940959 -50330485 - L1MEd LINE L1 -3527 3117 2645 1310 194 34 42 chr9 91941197 91941553 -50329891 - L1MA8 LINE L1 -10 6281 5929 254 340 30 10 chr9 91941796 91941896 -50329548 - L1MEd LINE L1 -4862 1772 1671 459 114 38 25 chr9 91942464 91942543 -50328901 - MADE1 DNA Mariner 0 80 1 193 200 187 0 chr9 91943554 91943629 -50327815 - MIR3 SINE MIR -105 103 15 218 316 44 44 chr9 91946587 91946701 -50324743 - L2 LINE L2 -20 3293 3180 254 329 54 27 chr9 91947230 91947379 -50324065 - MIR SINE MIR -105 157 5 676 253 77 15 chr9 91947497 91947740 -50323704 - L1MB5 LINE L1 -20 6154 5893 1751 169 3 41 chr9 91947740 91948054 -50323390 - AluJo SINE Alu -4 308 7 676 253 77 15 chr9 91948054 91948071 -50323373 - L1MB5 LINE L1 -281 5893 5878 1435 254 29 19 chr9 91948077 91948592 -50322852 - L1MEd LINE L1 -4877 1665 1146 349 129 16 0 chr9 91949308 91949370 -50322074 + L1MD3 LINE L1 7925 7987 -8 2276 98 0 7 chr9 91949370 91949667 -50321777 + AluSc SINE Alu 1 295 -14 581 237 66 50 chr9 91950400 91950598 -50320846 + MIR SINE MIR 42 242 -20 1791 195 77 14 chr9 91950733 91951148 -50320296 - MLT1C LTR MaLR -16 451 11 2034 130 7 0 chr9 91951758 91952051 -50319393 - AluSx SINE Alu -17 295 1 1131 243 129 77 chr9 91952227 91952745 -50318699 - MLT1H LTR MaLR 0 549 5 229 237 34 0 chr9 91952773 91952832 -50318612 - MER58C DNA MER1_type 0 215 155 462 222 51 8 chr9 91952892 91953009 -50318435 - MER58C DNA MER1_type -83 132 11 740 207 39 15 chr9 91953318 91953521 -50317923 - L1M4 LINE L1 -1383 4763 4556 * 2194 264 79 19 chr9 91953508 91954317 -50317127 - L1M4 LINE L1 -2021 4125 3268 2739 19 0 10 chr9 91954317 91954631 -50316813 - AluY SINE Alu 0 311 1 1154 166 18 13 chr9 91954732 91954961 -50316483 - AluSx SINE Alu -82 230 1 1006 247 133 81 chr9 91955138 91955656 -50315788 - MLT1H LTR MaLR 0 549 5 452 248 43 0 chr9 91955801 91955918 -50315526 - MER58C DNA MER1_type -83 132 11 740 207 39 15 chr9 91956227 91956430 -50315014 - L1M4 LINE L1 -1383 4763 4556 * 1901 266 62 22 chr9 91956417 91957044 -50314400 - L1M4 LINE L1 -2021 4125 3474 222 205 0 0 chr9 91957206 91957245 -50314199 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3395 210 53 25 chr9 91957247 91958110 -50313334 - MER45R DNA AcHobo -191 1390 504 717 216 88 102 chr9 91958168 91958520 -50312924 - MER45R DNA AcHobo -1234 347 1 698 209 19 47 chr9 91959824 91960035 -50311409 - L1ME2 LINE L1 -19 6145 5941 312 143 0 0 chr9 91960786 91960842 -50310602 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 608 337 41 27 chr9 91961016 91961177 -50310267 - L2 LINE L2 -5 3308 3151 4274 179 55 38 chr9 91961177 91961357 -50310087 - MER6 DNA MER2_type 0 865 690 2002 131 10 7 chr9 91961357 91961655 -50309789 + AluSx SINE Alu 3 301 -11 4274 179 55 38 chr9 91961655 91962324 -50309120 - MER6 DNA MER2_type -175 690 1 608 337 41 27 chr9 91962324 91962527 -50308917 - L2 LINE L2 -162 3151 2939 202 381 35 30 chr9 91962770 91962967 -50308477 + L2 LINE L2 2856 3053 -219 277 116 23 35 chr9 91963114 91963200 -50308244 + (TG)n Simple_repeat Simple_repeat 2 86 0 22 0 0 0 chr9 91963448 91963470 -50307974 + AT_rich Low_complexity Low_complexity 1 22 0 198 103 0 0 chr9 91963956 91963985 -50307459 + (GACTG)n Simple_repeat Simple_repeat 4 32 0 2439 86 0 0 chr9 91964085 91964388 -50307056 - AluY SINE Alu -8 303 1 217 185 37 37 chr9 91965641 91965695 -50305749 + MER5B DNA MER1_type 59 112 -66 7149 61 12 6 chr9 91966487 91967946 -50303498 + L1PA7 LINE L1 4678 6142 -12 454 202 0 0 chr9 91968872 91968956 -50302488 + MER63 DNA MER1_type 44 753 -83 1308 130 10 0 chr9 91968956 91969156 -50302288 - AluSc SINE Alu 0 309 108 1922 118 3 16 chr9 91969157 91969470 -50301974 - AluSc SINE Alu 0 309 1 184 318 45 0 chr9 91969946 91970012 -50301432 + MIR SINE MIR 134 202 -60 292 130 29 29 chr9 91970445 91970514 -50300930 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 200 284 0 40 chr9 91971933 91972007 -50299437 + GA-rich Low_complexity Low_complexity 2 72 0 1822 133 15 155 chr9 91972286 91972686 -50298758 + MER7A DNA MER2_type 5 346 0 1065 224 101 72 chr9 91972739 91973185 -50298259 + MER31B LTR ERV1 1 459 -7 2029 149 7 0 chr9 91974037 91974338 -50297106 - AluSx SINE Alu -9 303 1 1016 225 138 28 chr9 91975452 91975589 -50295855 - L1 LINE L1 -2868 3278 3158 2262 88 26 10 chr9 91975589 91975895 -50295549 - AluSx SINE Alu -1 311 1 1016 225 138 28 chr9 91975895 91976192 -50295252 - L1 LINE L1 -2988 3158 2796 674 244 18 0 chr9 91976239 91976407 -50295037 + L1MDb LINE L1 5 175 -6234 539 309 99 27 chr9 91976429 91976762 -50294682 + L1MDb LINE L1 237 593 -5816 570 211 55 0 chr9 91976765 91976893 -50294551 + L1MD1 LINE L1 6088 6222 -20 303 188 0 0 chr9 91976998 91977046 -50294398 + AluJo SINE Alu 1 48 -252 1475 181 0 4 chr9 91977090 91977350 -50294094 + AluJo SINE Alu 54 312 0 186 43 0 0 chr9 91977361 91977384 -50294060 + (CA)n Simple_repeat Simple_repeat 2 24 0 1637 260 111 44 chr9 91977394 91978496 -50292948 + L1M4 LINE L1 2685 3871 -2275 1910 114 9 47 chr9 91978496 91978813 -50292631 + AluSp SINE Alu 1 305 -8 1637 260 111 44 chr9 91978813 91978885 -50292559 + L1M4 LINE L1 3871 3937 -2209 746 220 137 42 chr9 91978886 91979085 -50292359 + MER4C LTR ERV1 1 228 -237 1551 112 0 76 chr9 91979085 91979334 -50292110 + MER30 DNA MER1_type 1 230 0 746 220 137 42 chr9 91979334 91979375 -50292069 + MER4C LTR ERV1 228 264 -201 300 191 29 15 chr9 91979352 91979420 -50292024 + LTR59 LTR ERV1 352 420 -177 * 648 262 11 21 chr9 91979439 91979630 -50291814 + MER4C LTR ERV1 273 461 -4 1226 282 84 53 chr9 91979718 91980275 -50291169 + L1M4 LINE L1 4213 4751 -1395 1741 188 169 5 chr9 91980275 91980701 -50290743 + LTR54B LTR ERV1 1 496 -2 1226 282 84 53 chr9 91980701 91981203 -50290241 + L1M4 LINE L1 4751 5305 -841 867 191 67 21 chr9 91981214 91981408 -50290036 + LTR52 LTR ERVL 216 418 -3 323 252 130 30 chr9 91982514 91982645 -50288799 + MLT1G LTR MaLR 89 232 -323 545 214 40 27 chr9 91982885 91983056 -50288388 + MLT1G LTR MaLR 431 589 -1 457 175 31 21 chr9 91983887 91983984 -50287460 + MER4A LTR ERV1 1 98 -566 1921 135 3 30 chr9 91983984 91984339 -50287105 + MER4A LTR ERV1 261 664 0 399 331 22 33 chr9 91984591 91984772 -50286672 + HAL1b LINE L1 70 248 -1100 519 281 49 35 chr9 91984783 91984986 -50286458 + HAL1b LINE L1 291 496 -852 2713 118 11 48 chr9 91985289 91985406 -50286038 + MER61B LTR ERV1 1 121 -304 300 27 0 0 chr9 91985406 91985443 -50286001 + (TTG)n Simple_repeat Simple_repeat 3 39 0 1972 130 22 0 chr9 91985450 91985727 -50285717 - AluSx SINE Alu -29 283 1 2713 118 11 48 chr9 91985727 91986042 -50285402 + MER61B LTR ERV1 127 425 0 434 195 0 0 chr9 91986103 91986185 -50285259 + FLAM SINE Alu 50 131 -12 249 139 0 0 chr9 91987231 91987274 -50284170 + (CA)n Simple_repeat Simple_repeat 2 44 0 208 349 12 12 chr9 91987416 91987499 -50283945 - MIR3 SINE MIR -12 196 114 248 303 121 64 chr9 91987753 91987942 -50283502 + L2 LINE L2 1709 1886 -1428 1749 184 3 59 chr9 91987942 91988239 -50283205 - MLT1A1 LTR MaLR 0 365 93 2304 94 0 3 chr9 91988239 91988536 -50282908 - AluSc SINE Alu -9 300 5 1749 184 3 59 chr9 91988536 91988625 -50282819 - MLT1A1 LTR MaLR -272 93 1 248 303 121 64 chr9 91988625 91988966 -50282478 + L2 LINE L2 1886 2269 -1045 368 242 82 77 chr9 91989302 91989484 -50281960 + L2 LINE L2 3103 3285 -28 2059 140 0 3 chr9 91989560 91989868 -50281576 + AluSq SINE Alu 2 308 -5 2231 109 3 0 chr9 91990604 91990906 -50280538 + AluY SINE Alu 1 303 -8 227 275 55 33 chr9 91991320 91991411 -50280033 - L2 LINE L2 -239 3033 2941 1039 115 0 0 chr9 91991632 91991771 -50279673 + AluSg SINE Alu 1 139 -171 255 410 20 0 chr9 91991855 91991955 -50279489 - L2 LINE L2 -630 2684 2583 610 305 71 30 chr9 91992346 91992641 -50278803 + L2 LINE L2 1918 2224 -1090 242 323 99 12 chr9 91992641 91992802 -50278642 - L2 LINE L2 -19 3294 3120 3431 168 110 14 chr9 91992834 91993573 -50277871 + MER21A LTR ERV1 122 931 0 283 310 179 55 chr9 91993588 91994144 -50277300 - L2 LINE L2 0 3313 2689 366 326 92 14 chr9 91994190 91994484 -50276960 - L2 LINE L2 -774 2540 2224 428 324 24 6 chr9 91994501 91994671 -50276773 + L2 LINE L2 2523 2695 -619 2218 205 0 0 chr9 91994715 91995174 -50276270 + L1MB5 LINE L1 4641 5099 -1047 2852 184 31 44 chr9 91995313 91995951 -50275493 + L1MB5 LINE L1 5501 6131 -43 2011 144 10 0 chr9 91995951 91996256 -50275188 + AluSg SINE Alu 3 310 0 2852 184 31 44 chr9 91996256 91996292 -50275152 + L1MB5 LINE L1 6131 6166 -8 403 296 118 38 chr9 91996311 91996497 -50274947 + L2 LINE L2 2927 3127 -186 255 152 0 0 chr9 91996510 91996556 -50274888 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 517 267 73 44 chr9 91996564 91996770 -50274674 + MIR SINE MIR 49 260 -2 242 264 0 11 chr9 91997434 91997525 -50273919 + CT-rich Low_complexity Low_complexity 2 91 0 303 213 40 0 chr9 91998125 91998200 -50273244 + MER116 DNA Mariner 3 80 0 25 31 0 0 chr9 91998226 91998258 -50273186 + AT_rich Low_complexity Low_complexity 1 32 0 722 185 250 0 chr9 91998386 91998586 -50272858 - MLT1D LTR MaLR 0 505 256 2040 148 11 29 chr9 91998619 91998998 -50272446 + MER4E LTR ERV1 408 779 0 2061 122 45 0 chr9 91999818 92000105 -50271339 - AluSx SINE Alu -12 300 1 365 179 137 0 chr9 92000406 92000501 -50270943 + L1MC5 LINE L1 7821 7928 -33 6417 92 11 1 chr9 92000875 92002309 -50269135 + L1PA10 LINE L1 4723 6167 -1 353 37 19 0 chr9 92002322 92002376 -50269068 + L1PA16 LINE L1 6112 6166 0 333 336 17 8 chr9 92003086 92003205 -50268239 + MIR SINE MIR 10 129 -133 2308 118 0 0 chr9 92003646 92003959 -50267485 - AluSp SINE Alu 0 313 1 1626 188 95 19 chr9 92004450 92004860 -50266584 - MLT1C LTR MaLR -23 444 4 21 0 0 0 chr9 92005221 92005242 -50266202 + AT_rich Low_complexity Low_complexity 1 21 0 541 307 78 0 chr9 92005612 92005804 -50265640 + MIR SINE MIR 31 237 -25 3321 127 7 40 chr9 92005865 92006458 -50264986 - MER4B LTR ERV1 -36 574 2 2107 108 4 0 chr9 92007854 92008131 -50263313 + AluSx SINE Alu 21 298 -14 1765 173 48 0 chr9 92008133 92008469 -50262975 - L1MC3 LINE L1 -252 7533 7182 851 350 45 7 chr9 92008592 92009015 -50262429 - L1M3c LINE L1 -5702 439 1 513 195 178 0 chr9 92009128 92009302 -50262142 - L1MCa LINE L1 -4844 1582 1378 2043 98 58 0 chr9 92010238 92010514 -50260930 - AluSc SINE Alu -17 292 1 4119 82 13 0 chr9 92011322 92011869 -50259575 - MER41A LTR ERV1 0 554 1 22 70 0 0 chr9 92012028 92012071 -50259373 + AT_rich Low_complexity Low_complexity 1 43 0 681 323 20 0 chr9 92012084 92012332 -50259112 - MER20B DNA MER1_type -267 516 264 305 296 61 45 chr9 92012590 92012722 -50258722 - MIR SINE MIR -117 145 12 332 286 41 41 chr9 92013469 92013640 -50257804 - MIR SINE MIR -91 171 1 4316 70 4 2 chr9 92014212 92014765 -50256679 + MER41A LTR ERV1 1 554 0 513 237 22 7 chr9 92015017 92015156 -50256288 + MLT1H1 LTR MaLR 400 540 -15 1926 163 0 10 chr9 92015843 92016149 -50255295 - AluJo SINE Alu -9 303 1 233 288 0 15 chr9 92016149 92016215 -50255229 + MIR SINE MIR 22 86 -176 1832 130 147 11 chr9 92016426 92016773 -50254671 + MSTA LTR MaLR 1 394 -34 947 189 6 0 chr9 92016777 92016984 -50254460 - AluSg/x SINE Alu 0 312 133 252 132 0 0 chr9 92016985 92017023 -50254421 + MSTA LTR MaLR 390 427 -1 418 334 56 40 chr9 92019507 92019809 -50251635 + HAL1b LINE L1 90 396 -952 1886 162 80 3 chr9 92019981 92020320 -50251124 - MLT1A1 LTR MaLR 0 365 1 1469 145 171 86 chr9 92022013 92022441 -50249003 + MER31B LTR ERV1 3 466 0 364 263 57 41 chr9 92022465 92022659 -50248785 - LTR33 LTR ERVL -321 200 4 32 26 0 0 chr9 92023150 92023189 -50248255 + AT_rich Low_complexity Low_complexity 1 39 0 629 289 46 20 chr9 92024783 92024980 -50246464 - MIR SINE MIR -43 219 18 30 45 0 0 chr9 92025061 92025105 -50246339 + AT_rich Low_complexity Low_complexity 1 44 0 251 251 85 78 chr9 92025274 92025545 -50245899 - L1M4 LINE L1 -1296 4850 4578 881 174 0 19 chr9 92026081 92026236 -50245208 - FRAM SINE Alu -14 152 1 477 256 99 23 chr9 92026609 92026781 -50244663 - MIR SINE MIR -26 236 52 312 280 319 0 chr9 92027346 92027503 -50243941 + MIR SINE MIR 18 224 -38 821 249 70 45 chr9 92027526 92027952 -50243492 - LTR56 LTR ERV1 0 445 9 1088 74 11 11 chr9 92031136 92031311 -50240133 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 787 289 63 30 chr9 92031345 92031739 -50239705 + MLT1J2 LTR MaLR 1 407 -43 4343 142 4 31 chr9 92032098 92032881 -50238563 - L1PA16 LINE L1 -1 6165 5404 4356 219 15 19 chr9 92032881 92034070 -50237374 + L1P LINE L1 4164 5348 -798 645 213 6 16 chr9 92034073 92034256 -50237188 - L1MEc LINE L1 -3072 3143 2963 907 279 49 17 chr9 92034325 92034970 -50236474 - L1MEc LINE L1 -3257 2958 2262 27 29 0 0 chr9 92035244 92035278 -50236166 + AT_rich Low_complexity Low_complexity 1 34 0 2040 143 0 3 chr9 92035343 92035637 -50235807 - AluSq SINE Alu -18 295 3 2056 111 4 0 chr9 92035650 92035930 -50235514 - AluSc SINE Alu -12 297 17 711 261 167 30 chr9 92037121 92037593 -50233851 - L1M4 LINE L1 -1227 4919 4383 369 227 0 0 chr9 92037596 92037684 -50233760 - L1MA10 LINE L1 0 6334 6247 1423 205 51 8 chr9 92037702 92038053 -50233391 + L1MC/D LINE L1 1986 2351 -4189 2588 211 41 37 chr9 92038053 92039196 -50232248 + L1MC/D LINE L1 4909 6059 -694 22 35 0 0 chr9 92040170 92040199 -50231245 + AT_rich Low_complexity Low_complexity 1 29 0 2426 101 5 48 chr9 92040923 92041319 -50230125 - MER11C LTR ERVK -15 1056 678 187 333 12 24 chr9 92042700 92042784 -50228660 - MIR SINE MIR 0 262 180 696 247 39 26 chr9 92043019 92043137 -50228307 - L1M4 LINE L1 -3591 2555 2440 1936 131 60 38 chr9 92043137 92043504 -50227940 + THE1C LTR MaLR 1 375 0 696 247 39 26 chr9 92043504 92043616 -50227828 - L1M4 LINE L1 -3706 2440 2322 1166 260 123 17 chr9 92045367 92045952 -50225492 + L1ME3A LINE L1 4479 5125 -1021 711 306 126 42 chr9 92045991 92046771 -50224673 + L1MDa LINE L1 3251 4095 -2445 5311 203 28 60 chr9 92047305 92047586 -50223858 + Charlie1a DNA MER1_type 21 310 -2451 2182 121 3 3 chr9 92047586 92047893 -50223551 + AluSx SINE Alu 1 307 -5 5311 203 28 60 chr9 92047893 92049087 -50222357 + Charlie1a DNA MER1_type 310 1448 -7 234 333 12 0 chr9 92050442 92050523 -50220921 - MIR SINE MIR -111 151 70 1946 100 87 0 chr9 92050566 92050876 -50220568 - L1MA2 LINE L1 0 6304 5968 637 134 31 10 chr9 92052151 92052248 -50219196 + AluSg SINE Alu 18 116 -194 689 269 53 16 chr9 92053572 92053895 -50217549 + L1MDb LINE L1 1062 1396 -5013 277 208 113 64 chr9 92054127 92054224 -50217220 + L1MDb LINE L1 1297 1388 -5018 1041 247 89 46 chr9 92054224 92054616 -50216828 - MER92A LTR ERV1 0 412 4 277 208 113 64 chr9 92054616 92054750 -50216694 + L1MDb LINE L1 1388 1638 -4768 * 646 271 19 24 chr9 92054721 92054928 -50216516 + L1ME1 LINE L1 6144 6349 -77 1381 288 14 35 chr9 92054992 92055586 -50215858 + L1ME3A LINE L1 5374 5954 -216 2089 113 3 3 chr9 92055715 92056026 -50215418 + AluSg SINE Alu 1 311 0 531 134 42 23 chr9 92056482 92056788 -50214656 + (TAGA)n Simple_repeat Simple_repeat 1 312 0 188 343 14 0 chr9 92056915 92056985 -50214459 + L3b LINE CR1 1337 1407 -176 1445 199 148 35 chr9 92057905 92058357 -50213087 - MLT1D LTR MaLR -2 503 1 2271 95 0 14 chr9 92058729 92059024 -50212420 + AluSx SINE Alu 3 293 -19 328 262 17 57 chr9 92060462 92060631 -50210813 + L1MC/D LINE L1 5542 5701 -504 338 286 0 0 chr9 92060694 92060771 -50210673 + MER82 DNA MER2_type 4 80 -573 * 437 179 0 12 chr9 92060768 92060852 -50210592 - MLT2D LTR ERVL -331 83 1 201 231 0 0 chr9 92062368 92062407 -50209037 - L2 LINE L2 -19 3294 3256 263 271 0 0 chr9 92062414 92062473 -50208971 - MIR SINE MIR -147 115 57 324 70 0 0 chr9 92063106 92063149 -50208295 + (TA)n Simple_repeat Simple_repeat 2 44 0 276 130 0 0 chr9 92063150 92063196 -50208248 + (GA)n Simple_repeat Simple_repeat 2 47 0 1904 224 46 6 chr9 92064651 92065129 -50206315 - MLT1D LTR MaLR -8 497 1 1349 96 10 0 chr9 92065215 92065414 -50206030 + L1PB1 LINE L1 5949 6149 -2 1698 232 115 11 chr9 92066220 92066672 -50204772 + MLT1D LTR MaLR 7 505 0 241 275 100 42 chr9 92066693 92066933 -50204511 + L2 LINE L2 2241 2494 -820 211 114 45 0 chr9 92067607 92067651 -50203793 + CT-rich Low_complexity Low_complexity 2 47 0 498 322 151 34 chr9 92067759 92068552 -50202892 + L2 LINE L2 1691 2576 -738 326 217 22 145 chr9 92068557 92068695 -50202749 + MLT1G LTR MaLR 453 573 -17 3139 156 75 45 chr9 92068802 92069506 -50201938 - LTR8A LTR ERV1 0 727 3 200 351 30 61 chr9 92069810 92069941 -50201503 + L2 LINE L2 3137 3263 -9 632 247 157 19 chr9 92070241 92070692 -50200752 - MLT1F LTR MaLR 0 542 1 1300 192 0 9 chr9 92070842 92071066 -50200378 + AluJo SINE Alu 61 282 -30 2361 96 0 3 chr9 92071758 92072060 -50199384 - AluSq SINE Alu -9 304 4 615 352 64 30 chr9 92072456 92072862 -50198582 + L2 LINE L2 863 1282 -2032 820 164 0 0 chr9 92072963 92073085 -50198359 + AluJb SINE Alu 164 285 -27 327 255 31 20 chr9 92073403 92073501 -50197943 + MLT1J1 LTR MaLR 85 183 -263 293 204 84 144 chr9 92074415 92074582 -50196862 + MLT1J1 LTR MaLR 286 442 -4 254 319 94 12 chr9 92074736 92074896 -50196548 + L2 LINE L2 1512 1684 -1630 1622 267 106 16 chr9 92075046 92075620 -50195824 + L1ME3A LINE L1 5529 6154 -16 1740 213 82 5 chr9 92076101 92076490 -50194954 + MLT1D LTR MaLR 87 505 0 23 0 0 0 chr9 92077073 92077096 -50194348 + AT_rich Low_complexity Low_complexity 1 23 0 532 170 75 41 chr9 92077234 92077381 -50194063 + L1MC5 LINE L1 7270 7421 -540 573 110 0 0 chr9 92077569 92077660 -50193784 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 526 232 161 7 chr9 92077710 92077865 -50193579 - MER5A DNA MER1_type 0 189 11 21 71 0 0 chr9 92078099 92078141 -50193303 + AT_rich Low_complexity Low_complexity 1 42 0 357 295 53 58 chr9 92078213 92078420 -50193024 - HAL1 LINE L1 -15 2492 2287 2065 255 55 34 chr9 92078458 92079364 -50192080 + L1MC5 LINE L1 6999 7923 -38 25 51 0 0 chr9 92079453 92079492 -50191952 + AT_rich Low_complexity Low_complexity 1 39 0 5166 176 20 59 chr9 92079650 92080834 -50190610 + L1MC3 LINE L1 6175 7312 -473 23 0 0 0 chr9 92080834 92080857 -50190587 + AT_rich Low_complexity Low_complexity 1 23 0 217 188 21 0 chr9 92080857 92080905 -50190539 + (TA)n Simple_repeat Simple_repeat 1 49 0 273 226 20 20 chr9 92080962 92081064 -50190380 - HAL1b LINE L1 -501 847 746 368 294 75 50 chr9 92081426 92081627 -50189817 - HAL1 LINE L1 -1215 1292 1087 * 387 266 76 70 chr9 92081612 92081954 -50189490 - HAL1 LINE L1 -1353 1154 811 2412 84 0 3 chr9 92082009 92082319 -50189125 + AluY SINE Alu 1 309 -2 210 71 0 0 chr9 92085121 92085149 -50186295 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1292 291 90 26 chr9 92085237 92085784 -50185660 - MLT1E LTR MaLR -4 589 8 1418 193 52 39 chr9 92085839 92086145 -50185299 + AluJo SINE Alu 1 310 -2 1135 224 146 19 chr9 92086158 92086480 -50184964 - MLT1A1 LTR MaLR 0 365 3 1290 217 48 74 chr9 92091392 92091894 -50179550 + MER110 LTR ERV1 3 491 0 230 246 31 0 chr9 92092770 92092835 -50178609 - MER5A DNA MER1_type 0 189 123 359 274 55 0 chr9 92092853 92092987 -50178457 + L1MD2 LINE L1 6011 6164 0 899 278 104 36 chr9 92093024 92093613 -50177831 + L1MC4 LINE L1 7413 8041 -1 1195 150 101 2 chr9 92093618 92094020 -50177424 - MLT1D LTR MaLR 0 505 3 1271 241 47 22 chr9 92094065 92094554 -50176890 + L1M4 LINE L1 2912 3412 -2734 2089 240 107 33 chr9 92095931 92096424 -50175020 - L1MD2 LINE L1 -29 6330 5772 489 123 41 0 chr9 92096424 92096497 -50174947 - MADE1 DNA Mariner 0 80 5 2089 240 107 33 chr9 92096497 92096675 -50174769 - L1MD2 LINE L1 -587 5772 5609 1785 189 7 0 chr9 92097372 92097679 -50173765 - AluJb SINE Alu -3 309 1 483 289 13 57 chr9 92099273 92099432 -50172012 + MLT1I LTR MaLR 4 155 -254 483 250 16 0 chr9 92099473 92099601 -50171843 + MLT1I LTR MaLR 278 407 -2 3326 93 35 0 chr9 92100270 92100309 -50171135 - MLT2A1 LTR ERVL 0 444 408 266 0 29 0 chr9 92100309 92100343 -50171101 + (TA)n Simple_repeat Simple_repeat 1 35 0 3326 93 35 0 chr9 92100343 92100732 -50170712 - MLT2A1 LTR ERVL -36 408 1 247 261 165 17 chr9 92102922 92103037 -50168407 - MIR SINE MIR -19 243 112 454 261 61 9 chr9 92103815 92103930 -50167514 + MER63 DNA MER1_type 1 747 -315 2693 198 41 13 chr9 92104762 92105303 -50166141 + MER74A LTR ERVL 3 558 0 300 282 42 49 chr9 92105304 92105446 -50165998 + MLT1J LTR MaLR 15 155 -356 243 263 91 10 chr9 92105480 92105579 -50165865 + MLT1J LTR MaLR 214 320 -191 2823 102 3 3 chr9 92106811 92107185 -50164259 - L1PB1 LINE L1 -2 6149 5776 246 233 0 0 chr9 92107185 92107245 -50164199 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1847 77 0 8 chr9 92107245 92107492 -50163952 - L1PB1 LINE L1 -361 5790 5546 1293 169 30 17 chr9 92107707 92107944 -50163500 - LTR32 LTR ERVL 0 471 232 2193 138 0 3 chr9 92107962 92108273 -50163171 + AluSx SINE Alu 1 310 -2 842 288 112 32 chr9 92108901 92109276 -50162168 - MLT1I LTR MaLR -3 406 2 2462 68 0 0 chr9 92109385 92109681 -50161763 + AluY SINE Alu 1 296 -15 216 175 0 25 chr9 92110132 92110172 -50161272 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 2528 182 62 88 chr9 92110885 92111357 -50160087 - LTR8 LTR ERV1 -2 689 238 1952 104 0 0 chr9 92111357 92111655 -50159789 + AluSx SINE Alu 34 331 0 2528 182 62 88 chr9 92111655 92111873 -50159571 - LTR8 LTR ERV1 -453 238 16 247 282 0 87 chr9 92112349 92112452 -50158992 + MER5B DNA MER1_type 80 173 -5 504 242 163 0 chr9 92112474 92112627 -50158817 + MER5A DNA MER1_type 10 187 -2 329 289 145 18 chr9 92112904 92113070 -50158374 - MIR SINE MIR -19 243 57 3208 157 45 19 chr9 92113192 92113766 -50157678 + LTR26E LTR ERV1 2 590 -32 2947 115 23 42 chr9 92113789 92114407 -50157037 - MER4B LTR ERV1 0 779 1 21 0 0 0 chr9 92115240 92115261 -50156183 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 92118808 92118840 -50152604 + AT_rich Low_complexity Low_complexity 1 32 0 432 0 0 0 chr9 92119224 92119272 -50152172 + (TG)n Simple_repeat Simple_repeat 1 48 0 303 275 56 44 chr9 92119333 92119493 -50151951 - MIR SINE MIR -62 200 39 955 235 140 39 chr9 92120470 92120828 -50150616 - MSTD LTR MaLR 0 396 3 349 318 127 47 chr9 92121163 92121462 -50149982 - L2 LINE L2 0 3313 2991 849 111 0 0 chr9 92121559 92121676 -50149768 + AluSg/x SINE Alu 185 301 -8 207 313 93 40 chr9 92122206 92122356 -50149088 - L2 LINE L2 -1005 2309 2152 372 323 56 6 chr9 92122370 92122531 -50148913 + MIR SINE MIR 66 234 -28 3915 195 53 57 chr9 92122601 92123797 -50147647 + L1MB8 LINE L1 4244 5444 -734 1939 115 14 18 chr9 92123797 92124075 -50147369 + AluSc SINE Alu 18 294 -15 2122 112 0 11 chr9 92124075 92124385 -50147059 + AluSq SINE Alu 1 307 0 3915 195 53 57 chr9 92124385 92125131 -50146313 + L1MB8 LINE L1 5442 6178 0 327 214 67 0 chr9 92125256 92125345 -50146099 + L1ME3 LINE L1 5705 5799 -365 1704 139 68 17 chr9 92125393 92125688 -50145756 + AluSx SINE Alu 1 310 -2 322 175 16 0 chr9 92125743 92125806 -50145638 + L1ME3 LINE L1 6024 6087 -75 21 71 0 0 chr9 92125847 92125889 -50145555 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 92126432 92126453 -50144991 + AT_rich Low_complexity Low_complexity 1 21 0 1790 173 3 0 chr9 92126887 92127170 -50144274 + AluJo SINE Alu 1 284 -28 264 91 0 0 chr9 92127170 92127214 -50144230 + (CATA)n Simple_repeat Simple_repeat 2 45 0 365 270 93 46 chr9 92127472 92127731 -50143713 - HAL1 LINE L1 -840 1667 1397 688 223 16 0 chr9 92128675 92128796 -50142648 + FLAM_A SINE Alu 1 123 -10 1230 96 0 19 chr9 92129634 92129843 -50141601 - AluSc SINE Alu -17 292 1 2219 217 17 0 chr9 92130268 92130738 -50140706 - L1MB3 LINE L1 -1022 5124 4647 * 2480 155 56 74 chr9 92130734 92130820 -50140624 + L1MB3 LINE L1 5129 5215 -968 2195 115 7 3 chr9 92130820 92131115 -50140329 + AluSg SINE Alu 3 298 -12 2480 155 56 74 chr9 92131115 92131242 -50140202 + L1MB3 LINE L1 5215 5343 -840 789 197 8 0 chr9 92131242 92131374 -50140070 + FLAM_A SINE Alu 1 133 0 2480 155 56 74 chr9 92131374 92131822 -50139622 + L1MB3 LINE L1 5343 5793 -390 2090 162 65 41 chr9 92131824 92132237 -50139207 + MSTA LTR MaLR 1 423 -5 2289 145 10 13 chr9 92132245 92132631 -50138813 + L1MB3 LINE L1 5796 6180 -3 1338 107 0 11 chr9 92132773 92132960 -50138484 + L1PA8 LINE L1 5988 6172 0 450 231 140 7 chr9 92133140 92133283 -50138161 + MER33 DNA MER1_type 29 190 -134 270 0 0 0 chr9 92133439 92133469 -50137975 + (CA)n Simple_repeat Simple_repeat 2 31 0 1821 165 0 3 chr9 92133472 92133763 -50137681 - AluJb SINE Alu -22 290 1 2553 44 0 0 chr9 92133777 92134070 -50137374 - AluY SINE Alu -18 293 1 410 94 82 12 chr9 92134071 92134156 -50137288 + MER33 DNA MER1_type 249 339 -24 1090 241 53 60 chr9 92134172 92134484 -50136960 + Charlie7 DNA MER1_type 733 1043 -1569 1724 192 36 9 chr9 92134484 92134817 -50136627 + MER2 DNA MER2_type 1 342 -2 1090 241 53 60 chr9 92134817 92134935 -50136509 + Charlie7 DNA MER1_type 1043 1160 -1452 246 318 59 12 chr9 92135054 92135139 -50136305 + L2 LINE L2 3168 3256 -16 1219 250 63 50 chr9 92135331 92135968 -50135476 + Charlie7 DNA MER1_type 1365 2009 -603 723 294 120 44 chr9 92136027 92136501 -50134943 - L2 LINE L2 -253 3060 2560 1515 267 100 27 chr9 92136533 92137644 -50133800 + L2 LINE L2 2117 3313 0 287 369 85 45 chr9 92138116 92138585 -50132859 - L2 LINE L2 -707 2607 2120 360 361 29 17 chr9 92138621 92138862 -50132582 - L2 LINE L2 -1340 1974 1731 328 304 43 14 chr9 92139895 92140033 -50131411 - MIR SINE MIR -74 188 47 2482 60 0 3 chr9 92140945 92141245 -50130199 - AluY SINE Alu -2 309 11 2072 189 21 24 chr9 92141726 92142144 -50129300 - MER47B DNA MER2_type 0 418 2 412 287 104 33 chr9 92142246 92142640 -50128804 - L1MC/D LINE L1 -2070 5738 5317 462 304 39 6 chr9 92142679 92142860 -50128584 + MER5A DNA MER1_type 3 189 0 347 267 109 27 chr9 92142877 92143098 -50128346 - L1MC/D LINE L1 -895 5251 5013 234 0 0 0 chr9 92143554 92143580 -50127864 + (TG)n Simple_repeat Simple_repeat 1 26 0 728 227 143 18 chr9 92144866 92145152 -50126292 + MER33 DNA MER1_type 1 322 -2 24 0 0 0 chr9 92146011 92146035 -50125409 + AT_rich Low_complexity Low_complexity 1 24 0 287 255 21 117 chr9 92149581 92149726 -50121718 + MER5B DNA MER1_type 2 132 -46 807 149 118 29 chr9 92149745 92150017 -50121427 + MLT1A1 LTR MaLR 15 349 -16 361 287 30 0 chr9 92150073 92150174 -50121270 + MER5A DNA MER1_type 9 112 -77 373 116 256 85 chr9 92150240 92150369 -50121075 - MER5A DNA MER1_type -8 181 31 218 319 44 71 chr9 92150622 92150735 -50120709 - MER91A DNA MER1_type -1 195 86 243 297 142 45 chr9 92150735 92150890 -50120554 - MER91A DNA MER1_type -26 170 1 804 228 23 12 chr9 92151145 92151316 -50120128 + MER5A DNA MER1_type 17 189 0 284 261 122 83 chr9 92151848 92152028 -50119416 - LTR16A LTR ERVL -181 269 83 651 219 16 0 chr9 92152081 92152209 -50119235 - MER5A DNA MER1_type 0 189 60 186 318 133 7 chr9 92153072 92153223 -50118221 + L2 LINE L2 705 874 -2440 193 266 141 0 chr9 92153435 92153499 -50117945 + L2 LINE L2 2622 2694 -620 324 367 47 16 chr9 92153525 92153831 -50117613 + L2 LINE L2 2766 3081 -232 1795 204 43 39 chr9 92153831 92154296 -50117148 + MLT1C LTR MaLR 1 467 0 1081 243 85 15 chr9 92154301 92154642 -50116802 + MLT1A1 LTR MaLR 1 365 0 4934 242 53 25 chr9 92155565 92158080 -50113364 + L1MB2 LINE L1 776 3321 -3061 2520 88 34 0 chr9 92158080 92158432 -50113012 - THE1B LTR MaLR 0 364 1 4934 242 53 25 chr9 92158432 92158864 -50112580 + L1MB2 LINE L1 3321 3739 -2643 1720 180 17 15 chr9 92158893 92159304 -50112140 + L1MCa LINE L1 902 1313 -5113 * 3328 170 41 94 chr9 92159296 92159789 -50111655 + L1MB2 LINE L1 5280 5798 -609 2468 90 0 0 chr9 92159789 92160101 -50111343 + AluSx SINE Alu 1 312 0 3328 170 41 94 chr9 92160101 92160789 -50110655 + L1MB2 LINE L1 5798 6393 -14 231 329 0 0 chr9 92161317 92161393 -50110051 - HAL1 LINE L1 -590 1917 1842 666 177 8 16 chr9 92161724 92161848 -50109596 + AluJo SINE Alu 23 145 -167 2208 206 62 17 chr9 92161850 92161892 -50109552 - L1MB3 LINE L1 -322 6359 6320 2204 115 0 10 chr9 92161892 92162188 -50109256 + AluSx SINE Alu 3 295 -17 2208 206 62 17 chr9 92162188 92162937 -50108507 - L1MB3 LINE L1 -361 6320 5537 254 49 0 24 chr9 92162940 92162981 -50108463 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1474 121 5 14 chr9 92162984 92163199 -50108245 - AluSq SINE Alu -33 280 68 1780 141 30 0 chr9 92163200 92163505 -50107939 - L1PBa LINE L1 -6548 315 2 1824 261 38 30 chr9 92163518 92164441 -50107003 - L1MB3 LINE L1 -3224 3420 2477 19292 190 38 36 chr9 92164445 92167574 -50103870 - L1PA13 LINE L1 -4 7597 4476 2004 87 102 0 chr9 92167574 92167839 -50103605 - AluY SINE Alu -19 292 1 19292 190 38 36 chr9 92167839 92172278 -50099166 - L1PA13 LINE L1 -3125 4476 12 3818 233 107 27 chr9 92172290 92173257 -50098187 - L1MB3 LINE L1 -4164 2482 1343 2215 113 0 10 chr9 92173257 92173568 -50097876 - AluSx SINE Alu -2 310 3 3818 233 107 27 chr9 92173568 92174155 -50097289 - L1MB3 LINE L1 -5303 1343 804 248 336 63 21 chr9 92174539 92174777 -50096667 - L1MB3 LINE L1 -6293 249 2 2234 69 0 4 chr9 92175445 92175720 -50095724 + AluY SINE Alu 28 301 -10 450 301 96 17 chr9 92175915 92176154 -50095290 + HAL1b LINE L1 98 355 -993 252 250 50 20 chr9 92176231 92176331 -50095113 + HAL1b LINE L1 405 507 -841 354 247 93 82 chr9 92176503 92176589 -50094855 + HAL1b LINE L1 719 803 -545 2465 133 30 23 chr9 92176589 92177018 -50094426 + MSTB1 LTR MaLR 1 432 0 354 247 93 82 chr9 92177018 92177113 -50094331 + HAL1b LINE L1 803 902 -446 2720 140 9 16 chr9 92177207 92177644 -50093800 - MER57B LTR ERV1 0 434 1 516 144 21 37 chr9 92177644 92177762 -50093682 - MER57B-int LTR ERV1 0 7537 7026 452 275 18 53 chr9 92177868 92177918 -50093526 - MER57B-int LTR ERV1 -556 6981 6931 2330 102 0 0 chr9 92177918 92178222 -50093222 - AluSx SINE Alu -8 304 1 452 275 18 53 chr9 92178222 92178342 -50093102 - MER57B-int LTR ERV1 -606 6931 6817 1866 171 7 0 chr9 92179630 92179923 -50091521 + AluSx SINE Alu 1 295 -17 1918 268 26 59 chr9 92180140 92180905 -50090539 - MER57B-int LTR ERV1 -1362 6175 5386 2122 113 3 23 chr9 92180905 92181207 -50090237 - AluSq SINE Alu -17 296 1 1918 268 26 59 chr9 92181207 92181829 -50089615 - MER57B-int LTR ERV1 -2151 5386 2017 319 340 0 10 chr9 92181903 92182003 -50089441 - MER57B-int LTR ERV1 -2919 3882 3784 437 287 32 32 chr9 92182506 92182753 -50088691 - MER57B-int LTR ERV1 -4388 4038 3792 267 326 22 29 chr9 92182808 92182946 -50088498 - MER57B-int LTR ERV1 -3826 2975 2839 389 271 89 76 chr9 92183052 92183525 -50087919 - MER57B-int LTR ERV1 -4100 2701 2546 291 340 51 57 chr9 92184622 92184957 -50086487 - MER57B-int LTR ERV1 -5211 1590 1258 398 212 0 0 chr9 92185570 92185636 -50085808 - MER57B-int LTR ERV1 -7238 299 234 2655 132 57 19 chr9 92185836 92186254 -50085190 - MER57B LTR ERV1 0 434 1 2973 157 47 9 chr9 92186262 92186811 -50084633 - LTR49 LTR ERV1 -23 572 3 1939 112 31 14 chr9 92187043 92187330 -50084114 + AluSx SINE Alu 1 292 -20 182 224 0 41 chr9 92188310 92188359 -50083085 - MIR SINE MIR -67 141 95 229 324 81 29 chr9 92188658 92188794 -50082650 - MIR3 SINE MIR -21 187 45 180 0 0 0 chr9 92188845 92188865 -50082579 + (CA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr9 92189061 92189082 -50082362 + AT_rich Low_complexity Low_complexity 1 21 0 619 234 58 13 chr9 92190112 92190266 -50081178 - MIR SINE MIR -38 224 64 44880 42 2 3 chr9 92191188 92196672 -50074772 + L1PA4 LINE L1 1 5479 -676 2372 51 0 0 chr9 92196672 92196947 -50074497 + AluY SINE Alu 36 310 -1 44880 42 2 3 chr9 92196947 92197623 -50073821 + L1PA4 LINE L1 5479 6154 -1 216 0 0 0 chr9 92197635 92197659 -50073785 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1096 114 58 166 chr9 92197881 92198206 -50073238 - L1MA9 LINE L1 0 6323 6025 364 241 6 6 chr9 92198900 92199070 -50072374 + (TG)n Simple_repeat Simple_repeat 1 170 0 648 207 0 3 chr9 92199081 92199790 -50071654 + (TG)n Simple_repeat Simple_repeat 1 706 0 486 169 14 20 chr9 92199830 92199978 -50071466 + (TG)n Simple_repeat Simple_repeat 1 147 0 326 267 74 2 chr9 92200154 92200287 -50071157 + MIR SINE MIR 22 161 -62 2316 84 0 0 chr9 92200976 92201313 -50070131 - AluSq SINE Alu 0 337 1 670 236 13 6 chr9 92201453 92201610 -50069834 + MIR SINE MIR 57 214 -48 23 0 0 0 chr9 92202187 92202210 -50069234 + AT_rich Low_complexity Low_complexity 1 23 0 1598 61 20 94 chr9 92203264 92203509 -50067935 + L1PA13 LINE L1 5931 6157 -6 2021 185 22 25 chr9 92203822 92204228 -50067216 - L1MB3 LINE L1 0 6183 5779 222 37 0 0 chr9 92204440 92204467 -50066977 + (CA)n Simple_repeat Simple_repeat 1 27 0 519 291 102 69 chr9 92204689 92205140 -50066304 - L2 LINE L2 -2 3311 2846 980 77 0 0 chr9 92205238 92205368 -50066076 - AluY SINE Alu -8 303 174 628 329 131 17 chr9 92205373 92205963 -50065481 - L2 LINE L2 -567 2747 2091 231 274 69 51 chr9 92206066 92206241 -50065203 - L2 LINE L2 -1483 1831 1654 602 278 57 8 chr9 92206490 92206735 -50064709 - L2 LINE L2 -107 3206 2950 3480 192 38 30 chr9 92207444 92208157 -50063287 - MER72 LTR ERV1 0 722 4 1197 152 10 5 chr9 92208241 92208438 -50063006 - L1MB4 LINE L1 0 6180 5983 2274 128 0 0 chr9 92208529 92208841 -50062603 - AluSx SINE Alu 0 312 1 1245 191 30 4 chr9 92208945 92209180 -50062264 - LTR39 LTR ERV1 0 783 543 1738 203 45 21 chr9 92209189 92209569 -50061875 - LTR39 LTR ERV1 -394 389 1 294 265 15 0 chr9 92209611 92209679 -50061765 - MIR3 SINE MIR -17 191 123 4678 90 29 3 chr9 92209883 92210504 -50060940 + L1PA13 LINE L1 5527 6163 0 443 239 18 0 chr9 92210886 92210995 -50060449 + L1ME1 LINE L1 6054 6164 -2 731 232 7 0 chr9 92211306 92211457 -50059987 + L1MB1 LINE L1 6017 6168 0 330 232 151 104 chr9 92211965 92212110 -50059334 + HAL1 LINE L1 2216 2380 -127 1863 173 3 7 chr9 92212110 92212417 -50059027 + AluSx SINE Alu 1 306 -6 330 232 151 104 chr9 92212417 92212530 -50058914 + HAL1 LINE L1 2380 2486 -21 2652 154 31 2 chr9 92212754 92213170 -50058274 + MSTA LTR MaLR 1 428 0 254 320 34 63 chr9 92213602 92213808 -50057636 + MIR SINE MIR 25 224 -38 222 163 23 0 chr9 92214733 92214776 -50056668 + (TA)n Simple_repeat Simple_repeat 1 44 0 1956 234 61 10 chr9 92214785 92215378 -50056066 + L1MD2 LINE L1 2286 2908 -3238 573 125 0 0 chr9 92215387 92215459 -50055985 + AluJb SINE Alu 32 103 -209 3487 200 60 30 chr9 92215498 92216002 -50055442 + L1MD2 LINE L1 5520 6060 -299 2366 82 0 10 chr9 92216002 92216307 -50055137 + AluY SINE Alu 1 302 -9 3487 200 60 30 chr9 92216307 92216616 -50054828 + L1MD2 LINE L1 6060 6358 -1 2218 250 31 72 chr9 92216618 92216915 -50054529 + L1ME1 LINE L1 5289 5597 -569 1126 184 0 0 chr9 92216915 92217078 -50054366 + FAM SINE Alu 1 163 -12 2218 250 31 72 chr9 92217078 92217691 -50053753 + L1ME1 LINE L1 5597 6161 -5 1181 299 69 2 chr9 92217743 92218195 -50053249 + L1ME LINE L1 5280 5761 -409 301 265 29 20 chr9 92218240 92218342 -50053102 - MIR SINE MIR -128 134 32 377 313 67 30 chr9 92218873 92219141 -50052303 + L1ME LINE L1 448 725 -5394 3016 86 2 7 chr9 92219260 92219666 -50051778 - PABL_B LTR ERV1 0 667 219 614 85 0 0 chr9 92219680 92219762 -50051682 - PABL_B LTR ERV1 -585 82 1 493 301 137 30 chr9 92219929 92220361 -50051083 + L1ME LINE L1 4208 4685 -1444 219 105 35 70 chr9 92220405 92220462 -50050982 + (TTATA)n Simple_repeat Simple_repeat 3 57 0 823 91 0 2 chr9 92220465 92220708 -50050736 + AluSx SINE Alu 1 294 -18 2397 138 47 20 chr9 92221008 92221415 -50050029 + MSTA LTR MaLR 11 428 0 27 29 0 0 chr9 92221821 92221855 -50049589 + AT_rich Low_complexity Low_complexity 1 34 0 1759 189 0 0 chr9 92221855 92222140 -50049304 + AluSx SINE Alu 1 285 -27 279 311 66 31 chr9 92222267 92222495 -50048949 + L1ME LINE L1 5319 5554 -591 2231 101 0 1 chr9 92223046 92223354 -50048090 - L1PA8A LINE L1 -31 6131 5834 357 200 24 12 chr9 92225380 92225465 -50045979 + MER4D LTR ERV1 107 192 -711 1133 227 44 53 chr9 92225526 92225887 -50045557 + MER4D LTR ERV1 544 901 -2 1138 181 4 17 chr9 92226350 92226587 -50044857 + AluSq SINE Alu 1 234 -79 201 318 16 0 chr9 92226764 92226827 -50044617 + MIR SINE MIR 51 114 -148 546 301 6 0 chr9 92226937 92227093 -50044351 + MIR SINE MIR 2 158 -104 1725 187 126 28 chr9 92228559 92228955 -50042489 - MER66A LTR ERV1 0 478 44 14756 122 11 5 chr9 92229318 92231425 -50040019 - MER66A-int LTR ERV1 0 6676 4558 299 244 58 35 chr9 92231426 92231512 -50039932 - MER4D LTR ERV1 -712 160 73 999 207 118 17 chr9 92231526 92231763 -50039681 - MER4D-int LTR ERV1 -122 6636 6376 590 230 56 8 chr9 92231757 92231901 -50039543 - MER4D-int LTR ERV1 -628 6130 3950 * 273 160 0 0 chr9 92231902 92231952 -50039492 - MER66-int LTR ERV1 -1304 4642 4593 749 159 11 108 chr9 92232090 92232266 -50039178 - MER66-int LTR ERV1 -4176 3944 3786 287 303 57 16 chr9 92232398 92232520 -50038924 - MER66-int LTR ERV1 -2152 4179 4053 * 4079 165 38 42 chr9 92232515 92233508 -50037936 - MER66-int LTR ERV1 -2339 4337 3142 5464 224 16 19 chr9 92233509 92234650 -50036794 - MER66-int LTR ERV1 -3226 3450 2314 2898 158 9 7 chr9 92234621 92235069 -50036375 - MER66-int LTR ERV1 -4516 2160 1712 * 1563 224 162 3 chr9 92235077 92235465 -50035979 - MER66A LTR ERV1 0 478 29 3427 138 35 43 chr9 92235968 92236146 -50035298 - LTR49 LTR ERV1 0 595 417 1609 158 17 38 chr9 92236146 92236438 -50035006 - AluJo SINE Alu -26 286 1 3427 138 35 43 chr9 92236438 92236859 -50034585 - LTR49 LTR ERV1 -178 417 1 640 262 54 0 chr9 92236887 92237055 -50034389 + MIR SINE MIR 68 244 -18 681 289 149 9 chr9 92237585 92237921 -50033523 - LTR16C LTR ERVL -12 479 97 728 256 66 5 chr9 92238134 92238345 -50033099 + MIR SINE MIR 21 244 -18 431 247 101 57 chr9 92239359 92239582 -50031862 + MIR SINE MIR 34 262 0 292 375 73 0 chr9 92240486 92240678 -50030766 + MIR SINE MIR 57 262 0 368 229 139 16 chr9 92241292 92241414 -50030030 + MIR SINE MIR 31 167 -95 4212 232 60 27 chr9 92241568 92243309 -50028135 + L1ME1 LINE L1 3979 5775 -389 3136 218 33 36 chr9 92243401 92243570 -50027874 - MER21B LTR ERV1 -129 734 566 2183 73 0 28 chr9 92243570 92243893 -50027551 + AluSc SINE Alu 1 315 0 3136 218 33 36 chr9 92243893 92244447 -50026997 - MER21B LTR ERV1 -297 566 12 318 212 0 0 chr9 92244489 92244555 -50026889 + L1ME1 LINE L1 5841 5906 -264 308 178 9 93 chr9 92244559 92244666 -50026778 + L1ME1 LINE L1 5873 5970 -192 1157 124 11 23 chr9 92244667 92244844 -50026600 - AluSc SINE Alu -16 293 119 303 253 101 0 chr9 92244869 92244948 -50026496 + L1ME1 LINE L1 5990 6076 -90 2402 98 141 95 chr9 92244956 92245540 -50025904 - MER4B LTR ERV1 -5 774 1 2439 123 12 47 chr9 92245540 92245948 -50025496 - MER4B-int LTR ERV1 0 6758 6365 2069 103 37 0 chr9 92246039 92246342 -50025102 + AluSg SINE Alu 1 313 0 5585 125 37 37 chr9 92246342 92247150 -50024294 - MER4B-int LTR ERV1 -441 6317 5507 5108 52 3 3 chr9 92247150 92247740 -50023704 - LTR10C LTR ERV1 -1 590 1 5585 125 37 37 chr9 92247740 92247878 -50023566 - MER4B-int LTR ERV1 -1250 5508 5371 250 290 97 45 chr9 92247882 92248037 -50023407 + L2 LINE L2 3146 3308 -5 2265 119 3 0 chr9 92248232 92248534 -50022910 - AluSp SINE Alu -10 303 1 2444 207 115 40 chr9 92248643 92249315 -50022129 - MER72 LTR ERV1 0 722 1 2147 194 16 11 chr9 92249899 92250333 -50021111 + MER45B DNA AcHobo 604 1039 -1 1271 205 186 35 chr9 92250356 92250781 -50020663 - MLT1H1 LTR MaLR 0 555 67 601 233 30 0 chr9 92250785 92250918 -50020526 - MIR SINE MIR -124 138 2 355 256 141 50 chr9 92251478 92251740 -50019704 + L1ME LINE L1 4734 5019 -1127 1982 122 21 7 chr9 92251744 92252031 -50019413 + AluSg SINE Alu 1 291 -19 231 265 37 22 chr9 92252243 92252390 -50019054 + L1P5 LINE L1 5309 5456 -698 326 275 145 8 chr9 92252531 92252662 -50018782 - MER91A DNA MER1_type -27 169 21 496 287 73 33 chr9 92252664 92252936 -50018508 + L1ME LINE L1 5537 5819 -302 24 32 0 0 chr9 92253117 92253148 -50018296 + AT_rich Low_complexity Low_complexity 1 31 0 4191 236 73 68 chr9 92254425 92255772 -50015672 + L1M4 LINE L1 10 1367 -5492 2245 124 0 6 chr9 92255772 92256086 -50015358 - AluSx SINE Alu 0 312 1 4191 236 73 68 chr9 92256086 92256236 -50015208 + L1M4 LINE L1 1367 1515 -5344 3224 119 55 18 chr9 92256236 92256829 -50014615 - MER4B LTR ERV1 0 779 1 22 35 0 0 chr9 92257801 92257830 -50013614 + AT_rich Low_complexity Low_complexity 1 29 0 1484 234 75 41 chr9 92259315 92259756 -50011688 + MLT2B1 LTR ERVL 1 456 -64 1366 92 31 62 chr9 92260180 92260224 -50011220 + L1PB1 LINE L1 5929 5973 -178 2273 108 0 3 chr9 92260224 92260529 -50010915 + AluSp SINE Alu 1 304 -9 1366 92 31 62 chr9 92260529 92260711 -50010733 + L1PB1 LINE L1 5973 6148 -3 269 280 89 54 chr9 92262366 92262564 -50008880 + L1M4 LINE L1 3800 3990 -2967 2189 113 3 0 chr9 92262564 92262865 -50008579 - AluSq SINE Alu -11 302 1 269 280 89 54 chr9 92262865 92263038 -50008406 + L1M4 LINE L1 3990 4184 -2773 867 124 193 98 chr9 92263481 92263853 -50007591 - MER4C LTR ERV1 0 465 265 1573 231 44 0 chr9 92264271 92264609 -50006835 + MLT2B1 LTR ERVL 1 353 -167 230 363 38 12 chr9 92264631 92264791 -50006653 - L2 LINE L2 -1424 1890 1727 271 184 41 10 chr9 92266832 92266930 -50004514 + (TATG)n Simple_repeat Simple_repeat 2 102 0 271 246 8 66 chr9 92266937 92267059 -50004385 + (TATATG)n Simple_repeat Simple_repeat 4 118 0 300 206 14 34 chr9 92267076 92267222 -50004222 + (TATATG)n Simple_repeat Simple_repeat 2 144 0 500 246 119 41 chr9 92268012 92268485 -50002959 + MLT1H LTR MaLR 2 549 0 211 286 110 22 chr9 92268638 92268729 -50002715 + MIR SINE MIR 66 164 -98 704 171 44 32 chr9 92269104 92269262 -50002182 - MER115 DNA AcHobo -7 686 527 3440 126 132 57 chr9 92269262 92270211 -50001233 + pTR5 LTR ERV1 750 2021 -417 296 245 31 20 chr9 92270215 92270313 -50001131 + LTR30 LTR ERV1 544 642 -80 1542 89 19 5 chr9 92270320 92270533 -50000911 + pTR5 LTR ERV1 175 390 -2048 445 291 104 26 chr9 92270543 92270773 -50000671 - MER115 DNA AcHobo -167 526 279 192 333 42 58 chr9 92270867 92270987 -50000457 + L3 LINE CR1 1459 1576 -1 484 222 0 89 chr9 92271280 92271415 -50000029 - MER94 DNA DNA -10 124 2 249 159 0 0 chr9 92271978 92272022 -49999422 + T-rich Low_complexity Low_complexity 1 44 0 255 202 71 40 chr9 92272138 92272237 -49999207 - L1M4 LINE L1 -2194 3952 3851 2792 247 58 28 chr9 92272607 92273157 -49998287 + L1MD1 LINE L1 3843 4438 -1708 1637 202 85 6 chr9 92273157 92273474 -49997970 - MER61A LTR ERV1 0 343 2 2792 247 58 28 chr9 92273474 92273932 -49997512 + L1MD1 LINE L1 4438 4881 -1265 2175 105 10 38 chr9 92273934 92274248 -49997196 + AluSx SINE Alu 1 305 -7 4084 187 36 20 chr9 92274254 92274884 -49996560 + L1MD1 LINE L1 4966 5620 -622 2007 127 3 3 chr9 92274884 92275197 -49996247 + AluSx SINE Alu 1 313 0 4084 187 36 20 chr9 92275197 92275626 -49995818 + L1MD1 LINE L1 5620 6041 -201 1121 120 0 6 chr9 92275626 92275784 -49995660 + AluSq SINE Alu 1 157 -156 1655 219 84 47 chr9 92275893 92276359 -49995085 + MLT1D LTR MaLR 21 503 -2 2206 232 32 63 chr9 92276359 92277041 -49994403 + MLT1D-int LTR MaLR 1 661 -710 289 271 71 24 chr9 92277081 92277166 -49994278 + MLT1D-int LTR MaLR 662 750 -621 978 229 69 34 chr9 92277433 92277695 -49993749 + MLT1D-int LTR MaLR 939 1209 -162 1575 177 26 12 chr9 92277696 92278005 -49993439 - MER41B LTR ERV1 -12 597 314 1895 93 8 8 chr9 92278005 92278273 -49993171 + THE1C-int LTR MaLR 1313 1580 0 2356 120 18 37 chr9 92278273 92278655 -49992789 + THE1C LTR MaLR 1 375 0 7695 132 36 11 chr9 92278746 92279729 -49991715 - THE1C-int LTR MaLR -371 1209 191 4071 86 4 4 chr9 92279729 92280240 -49991204 - MER9 LTR ERVK 0 511 1 7695 132 36 11 chr9 92280240 92280436 -49991008 - THE1C-int LTR MaLR -1389 191 1 1996 165 46 30 chr9 92280436 92280805 -49990639 - THE1C LTR MaLR 0 375 1 398 250 127 5 chr9 92280909 92281176 -49990268 - LTR48 LTR ERV1 -309 478 157 899 218 232 65 chr9 92281307 92281962 -49989482 + SATR1 Satellite Satellite 1 764 -4 994 216 192 29 chr9 92282008 92282418 -49989026 + SATR1 Satellite Satellite 1 476 -404 1976 133 7 3 chr9 92284117 92284419 -49987025 + AluSq SINE Alu 1 303 -10 218 319 44 26 chr9 92284473 92284586 -49986858 - L2 LINE L2 0 3272 3158 2270 103 0 6 chr9 92284973 92285285 -49986159 - AluSg SINE Alu 0 310 1 250 332 56 23 chr9 92285684 92285898 -49985546 + MIR SINE MIR 32 252 -10 212 158 0 0 chr9 92285917 92285955 -49985489 + (CAT)n Simple_repeat Simple_repeat 3 40 0 2974 234 25 41 chr9 92286727 92286979 -49984465 - L1MB3 LINE L1 -30 6153 5899 1999 158 0 0 chr9 92286979 92287283 -49984161 - AluSx SINE Alu -8 304 1 2974 234 25 41 chr9 92287283 92287394 -49984050 - L1MB3 LINE L1 -284 5899 5788 1990 129 3 7 chr9 92287394 92287407 -49984037 - AluSx SINE Alu -10 302 290 252 0 0 0 chr9 92287407 92287435 -49984009 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1990 129 3 7 chr9 92287435 92287724 -49983720 - AluSx SINE Alu -22 290 1 2974 234 25 41 chr9 92287724 92288715 -49982729 - L1MB3 LINE L1 -395 5788 4819 2140 120 3 3 chr9 92288761 92289069 -49982375 + AluSp SINE Alu 1 308 -5 1391 199 3 82 chr9 92289149 92289356 -49982088 - L1MA4 LINE L1 -170 6130 5967 1852 141 11 0 chr9 92289356 92289633 -49981811 - AluSx SINE Alu -32 280 1 1391 199 3 82 chr9 92289633 92289816 -49981628 - L1MA4 LINE L1 -333 5967 5771 313 218 134 56 chr9 92289858 92290000 -49981444 + HsTC2 DNA Tc2 1631 1783 -115 2034 113 3 77 chr9 92290005 92290342 -49981102 + AluSp SINE Alu 1 312 -1 353 212 35 0 chr9 92290565 92290650 -49980794 + MER5B DNA MER1_type 87 174 -4 705 242 40 0 chr9 92290752 92290950 -49980494 - MER6B DNA MER2_type 0 210 5 1392 130 27 22 chr9 92292848 92293071 -49978373 + AluSq SINE Alu 1 224 -89 2021 194 141 7 chr9 92293073 92293731 -49977713 + SATR1 Satellite Satellite 1 746 -1 2305 179 110 16 chr9 92293762 92295227 -49976217 + SATR1 Satellite Satellite 1 1602 -20 29243 92 15 12 chr9 92295228 92299271 -49972173 - HERVE LTR ERV1 -2649 5164 1108 303 168 8 64 chr9 92299325 92299450 -49971994 + (TAA)n Simple_repeat Simple_repeat 1 118 0 29 78 0 0 chr9 92299508 92299572 -49971872 + AT_rich Low_complexity Low_complexity 1 64 0 2212 194 117 11 chr9 92299627 92301684 -49969760 - SATR1 Satellite Satellite 0 2274 1 23 54 0 0 chr9 92301687 92301724 -49969720 + AT_rich Low_complexity Low_complexity 1 37 0 343 225 11 50 chr9 92301777 92301959 -49969485 + (TAA)n Simple_repeat Simple_repeat 2 176 0 1789 220 101 42 chr9 92302053 92303198 -49968246 + SATR1 Satellite Satellite 1 1212 0 1730 187 126 28 chr9 92303331 92303727 -49967717 - MER66A LTR ERV1 0 478 44 14813 121 11 5 chr9 92303994 92306101 -49965343 - MER66A-int LTR ERV1 0 6676 4558 294 244 58 35 chr9 92306102 92306188 -49965256 - MER4D LTR ERV1 -712 160 73 986 207 118 17 chr9 92306202 92306439 -49965005 - MER4D-int LTR ERV1 -122 6636 6376 590 230 56 8 chr9 92306433 92306577 -49964867 - MER4D-int LTR ERV1 -628 6130 3950 * 269 160 0 0 chr9 92306578 92306628 -49964816 - MER66-int LTR ERV1 -1304 4642 4593 746 159 11 108 chr9 92306766 92306942 -49964502 - MER66-int LTR ERV1 -4176 3944 3786 279 303 57 16 chr9 92307074 92307196 -49964248 - MER66-int LTR ERV1 -2152 4179 4053 * 4034 166 38 39 chr9 92307191 92308180 -49963264 - MER66-int LTR ERV1 -2339 4337 3142 5493 223 16 19 chr9 92308181 92309322 -49962122 - MER66-int LTR ERV1 -3226 3450 2314 2875 161 9 7 chr9 92309293 92309741 -49961703 - MER66-int LTR ERV1 -4516 2160 1712 * 1569 224 162 3 chr9 92309749 92310137 -49961307 - MER66A LTR ERV1 0 478 29 3237 138 35 43 chr9 92310640 92310818 -49960626 - LTR49 LTR ERV1 0 595 417 1627 158 17 38 chr9 92310818 92311110 -49960334 - AluJo SINE Alu -26 286 1 3237 138 35 43 chr9 92311110 92311531 -49959913 - LTR49 LTR ERV1 -178 417 1 598 244 56 0 chr9 92311559 92311719 -49959725 + MIR SINE MIR 68 236 -26 711 286 149 9 chr9 92312257 92312593 -49958851 - LTR16C LTR ERVL -12 479 97 666 256 66 5 chr9 92312806 92313017 -49958427 + MIR SINE MIR 21 244 -18 376 246 108 54 chr9 92314051 92314254 -49957190 + MIR SINE MIR 49 262 0 248 375 73 0 chr9 92315158 92315350 -49956094 + MIR SINE MIR 57 262 0 369 253 182 12 chr9 92315964 92316134 -49955310 + MIR SINE MIR 31 229 -33 4117 229 63 31 chr9 92316240 92317982 -49953462 + L1ME1 LINE L1 3979 5775 -389 3107 214 36 39 chr9 92318074 92318243 -49953201 - MER21B LTR ERV1 -129 734 566 2210 73 0 28 chr9 92318243 92318570 -49952874 + AluSc SINE Alu 1 319 0 3107 214 36 39 chr9 92318570 92319124 -49952320 - MER21B LTR ERV1 -297 566 12 317 212 0 0 chr9 92319166 92319232 -49952212 + L1ME1 LINE L1 5841 5906 -264 280 187 9 93 chr9 92319236 92319343 -49952101 + L1ME1 LINE L1 5873 5970 -192 1171 124 11 22 chr9 92319344 92319522 -49951922 - AluSc SINE Alu -15 294 119 305 253 101 0 chr9 92319548 92319627 -49951817 + L1ME1 LINE L1 5990 6076 -90 2400 98 141 95 chr9 92319635 92320219 -49951225 - MER4B LTR ERV1 -5 774 1 2436 123 12 47 chr9 92320219 92320627 -49950817 - MER4B-int LTR ERV1 0 6758 6365 2110 99 37 0 chr9 92320716 92321015 -49950429 + AluSg SINE Alu 1 309 0 5539 123 37 37 chr9 92321015 92321823 -49949621 - MER4B-int LTR ERV1 -441 6317 5507 4884 52 3 3 chr9 92321823 92322413 -49949031 - LTR10C LTR ERV1 -1 590 1 5539 123 37 37 chr9 92322413 92322551 -49948893 - MER4B-int LTR ERV1 -1250 5508 5371 201 254 200 31 chr9 92322555 92322685 -49948759 + L2 LINE L2 3146 3297 -16 2205 113 3 0 chr9 92322903 92323215 -49948229 - AluSp SINE Alu 0 313 1 2238 214 112 37 chr9 92323324 92323996 -49947448 - MER72 LTR ERV1 0 722 1 2133 191 16 11 chr9 92324580 92325014 -49946430 + MER45B DNA AcHobo 604 1039 -1 1277 205 186 35 chr9 92325037 92325462 -49945982 - MLT1H1 LTR MaLR 0 555 67 559 233 30 0 chr9 92325466 92325599 -49945845 - MIR SINE MIR -124 138 2 334 252 141 50 chr9 92326160 92326422 -49945022 + L1ME LINE L1 4734 5019 -1127 1998 122 21 7 chr9 92326426 92326713 -49944731 + AluSg SINE Alu 1 291 -19 317 241 37 46 chr9 92326964 92327072 -49944372 + L1ME LINE L1 5347 5453 -668 276 241 170 9 chr9 92327232 92327344 -49944100 - MER91A DNA MER1_type -46 150 21 481 287 73 33 chr9 92327346 92327618 -49943826 + L1ME LINE L1 5537 5819 -302 24 32 0 0 chr9 92327799 92327830 -49943614 + AT_rich Low_complexity Low_complexity 1 31 0 4222 235 73 68 chr9 92329107 92330453 -49940991 + L1MB8 LINE L1 10 1367 -5492 2264 124 0 6 chr9 92330453 92330767 -49940677 - AluSx SINE Alu 0 312 1 4222 235 73 68 chr9 92330767 92330917 -49940527 + L1MB8 LINE L1 1367 1515 -5344 3185 120 53 19 chr9 92330917 92331512 -49939932 - MER4B LTR ERV1 0 779 1 997 212 103 2 chr9 92331518 92331811 -49939633 + L1MB8 LINE L1 5261 5577 -1380 3596 164 54 28 chr9 92331822 92332531 -49938913 - LTR8A LTR ERV1 0 727 1 6019 19 1 0 chr9 92332531 92333279 -49938165 + L1PA3 LINE L1 5457 6205 0 2452 187 84 9 chr9 92333284 92334330 -49937114 + L1MB8 LINE L1 5583 6703 -286 405 39 0 0 chr9 92334547 92334598 -49936846 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1874 124 4 4 chr9 92334598 92334872 -49936572 - AluSx SINE Alu -29 283 10 427 288 78 0 chr9 92335553 92335758 -49935686 + LTR16A LTR ERVL 119 339 -111 403 281 58 35 chr9 92337033 92337204 -49934240 + HAL1b LINE L1 413 587 -761 270 241 106 0 chr9 92337242 92337383 -49934061 + HAL1b LINE L1 651 806 -542 1239 200 98 69 chr9 92337449 92337489 -49933955 + MLT1D LTR MaLR 1 38 -467 2638 158 7 0 chr9 92337489 92337912 -49933532 - MSTB LTR MaLR 0 426 1 1239 200 98 69 chr9 92337912 92338362 -49933082 + MLT1D LTR MaLR 38 505 0 241 296 0 37 chr9 92338397 92338532 -49932912 - L1ME4a LINE L1 -189 5932 5803 1005 177 0 0 chr9 92339076 92339234 -49932210 - FRAM SINE Alu -17 159 2 387 0 0 0 chr9 92339990 92340033 -49931411 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr9 92341534 92341556 -49929888 + AT_rich Low_complexity Low_complexity 1 22 0 241 197 30 0 chr9 92343254 92343320 -49928124 + CT-rich Low_complexity Low_complexity 1 68 0 2146 103 3 3 chr9 92343320 92343610 -49927834 - AluSc SINE Alu -19 290 1 250 246 115 62 chr9 92345165 92345295 -49926149 + MLT1K LTR MaLR 169 305 -283 6614 211 61 44 chr9 92347609 92347815 -49923629 + L1MB7 LINE L1 5 206 -6438 2273 119 0 3 chr9 92347815 92348126 -49923318 - AluSq SINE Alu -3 310 1 6614 211 61 44 chr9 92348126 92351269 -49920175 + L1MB7 LINE L1 206 3443 -3201 2164 197 89 35 chr9 92351269 92351786 -49919658 - MER68 LTR ERV1 -15 547 3 7869 196 59 43 chr9 92351787 92352403 -49919041 + L1MB7 LINE L1 3451 4055 -2627 2316 102 0 0 chr9 92352403 92352697 -49918747 - AluSc SINE Alu -15 294 1 7869 196 59 43 chr9 92352697 92353529 -49917915 + L1MB7 LINE L1 4055 4872 -1810 2600 34 0 12 chr9 92353529 92353849 -49917595 + L1PA4 LINE L1 5840 6155 0 7869 196 59 43 chr9 92353849 92353892 -49917552 + L1MB7 LINE L1 4872 4913 -1769 2372 115 0 0 chr9 92353892 92354204 -49917240 + AluSx SINE Alu 1 312 0 7869 196 59 43 chr9 92354204 92355880 -49915564 + L1MB7 LINE L1 4913 6659 -23 220 252 141 22 chr9 92357964 92358099 -49913345 - L3 LINE CR1 -293 1284 1134 226 347 31 0 chr9 92358201 92358299 -49913145 - MIR SINE MIR -67 141 41 239 326 11 0 chr9 92358327 92358422 -49913022 - L3 LINE CR1 -463 1114 1019 2378 57 3 0 chr9 92358474 92358757 -49912687 - AluY SINE Alu -7 304 21 259 212 71 35 chr9 92359117 92359202 -49912242 - L3 LINE CR1 -870 707 620 183 357 63 8 chr9 92359299 92359425 -49912019 + MIR SINE MIR 47 179 -83 194 337 22 11 chr9 92359474 92359563 -49911881 - L3 LINE CR1 -1060 517 428 1159 199 63 20 chr9 92363328 92363679 -49907765 - L1M4 LINE L1 -3047 3099 2734 2035 146 26 20 chr9 92363986 92364328 -49907116 + MER2 DNA MER2_type 1 344 0 678 256 18 31 chr9 92364979 92365162 -49906282 + MIR SINE MIR 36 217 -45 216 0 0 0 chr9 92365162 92365186 -49906258 + (CA)n Simple_repeat Simple_repeat 2 25 0 678 256 18 31 chr9 92365186 92365229 -49906215 + MIR SINE MIR 217 259 -3 462 189 11 0 chr9 92367227 92367322 -49904122 - MER5A DNA MER1_type -87 102 7 206 280 103 19 chr9 92368278 92368385 -49903059 - L2 LINE L2 -1 3312 3197 2176 275 92 48 chr9 92370995 92372011 -49899433 + Charlie8 DNA MER1_type 488 1548 -869 3558 171 40 15 chr9 92372017 92372501 -49898943 - L1MB2 LINE L1 -239 5932 5462 1875 179 134 7 chr9 92372501 92372910 -49898534 + LOR1b LTR ERV1 1 461 0 3558 171 40 15 chr9 92372910 92373364 -49898080 - L1MB2 LINE L1 -709 5462 4963 1143 260 77 57 chr9 92373374 92373882 -49897562 + Charlie8 DNA MER1_type 1560 2077 -340 457 153 0 0 chr9 92373931 92374003 -49897441 - FRAM SINE Alu -69 107 36 254 305 25 42 chr9 92374130 92374248 -49897196 + Charlie8 DNA MER1_type 2301 2416 -1 43624 32 22 3 chr9 92374271 92380291 -49891153 - L1PA3 LINE L1 -2 6153 14 826 117 175 53 chr9 92380668 92380822 -49890622 + L1MA7 LINE L1 6060 6247 -44 1515 158 61 27 chr9 92380822 92381119 -49890325 + AluJo SINE Alu 1 307 -5 826 117 175 53 chr9 92381119 92381170 -49890274 + L1MA7 LINE L1 6247 6290 -1 267 237 17 0 chr9 92381477 92381536 -49889908 - MER5A DNA MER1_type -79 110 51 358 271 83 34 chr9 92381853 92382119 -49889325 - L2 LINE L2 -183 3130 2852 2390 149 53 17 chr9 92382250 92382666 -49888778 - MER65A LTR ERV1 0 445 15 225 294 0 0 chr9 92383191 92383242 -49888202 + LTR67 LTR ERVL 484 534 -23 708 320 147 28 chr9 92383353 92384346 -49887098 - L2 LINE L2 -2 3311 2160 730 288 149 6 chr9 92384473 92384789 -49886655 + MLT1L LTR MaLR 243 603 -12 442 304 113 29 chr9 92384802 92385042 -49886402 - L2 LINE L2 -1976 1338 1079 252 283 9 71 chr9 92385048 92385161 -49886283 - MIR SINE MIR 0 262 157 * 349 291 87 37 chr9 92385158 92385399 -49886045 - L2 LINE L2 -2232 1082 830 1135 166 9 113 chr9 92386213 92386539 -49884905 - L1MC5 LINE L1 -908 7053 6762 214 216 0 20 chr9 92386737 92386788 -49884656 + (CCCG)n Simple_repeat Simple_repeat 3 52 0 507 268 80 77 chr9 92386996 92387324 -49884120 + LTR16C LTR ERVL 101 432 -59 2790 10 0 0 chr9 92387324 92387635 -49883809 - AluYa5 SINE Alu 0 311 1 507 268 80 77 chr9 92387635 92387694 -49883750 + LTR16C LTR ERVL 432 489 -2 248 292 188 42 chr9 92388181 92388325 -49883119 - MIR SINE MIR -6 256 92 2012 288 57 12 chr9 92388614 92389264 -49882180 + MER97c DNA MER1_type? 1 679 -411 295 211 118 0 chr9 92389277 92389353 -49882091 + MER97c DNA MER1_type? 997 1081 -9 187 280 40 13 chr9 92390922 92390971 -49880473 + MER5A DNA MER1_type 36 89 -100 1730 155 64 21 chr9 92390971 92391300 -49880144 - MER61A LTR ERV1 0 343 1 187 280 40 13 chr9 92391300 92391325 -49880119 + MER5A DNA MER1_type 89 112 -77 998 189 182 46 chr9 92391519 92391821 -49879623 - MLT1B LTR MaLR -39 351 9 814 172 123 41 chr9 92392147 92392442 -49879002 + MLT1B LTR MaLR 1 389 -1 348 118 0 0 chr9 92392611 92392662 -49878782 - Alu SINE Alu -248 51 1 265 341 22 52 chr9 92392671 92392806 -49878638 + MER5B DNA MER1_type 45 175 -3 252 198 10 73 chr9 92392884 92392980 -49878464 + MIR SINE MIR 123 212 -50 454 204 17 22 chr9 92394160 92394341 -49877103 + (CA)n Simple_repeat Simple_repeat 1 180 0 348 213 11 38 chr9 92394326 92394509 -49876935 + (CATA)n Simple_repeat Simple_repeat 2 179 0 * 272 250 10 20 chr9 92394511 92394611 -49876833 + (CA)n Simple_repeat Simple_repeat 2 100 0 250 114 0 0 chr9 92396182 92396217 -49875227 - LTR13 LTR ERVK 0 1007 973 16440 212 23 34 chr9 92396218 92400033 -49871411 - HERVK13 LTR ERVK -4343 3773 1 5698 151 16 24 chr9 92400033 92400995 -49870449 - LTR13 LTR ERVK 0 954 1 480 18 0 0 chr9 92401066 92401123 -49870321 + (GA)n Simple_repeat Simple_repeat 1 57 0 338 263 21 9 chr9 92402671 92402972 -49868472 + (TG)n Simple_repeat Simple_repeat 1 304 0 428 280 36 30 chr9 92402980 92403148 -49868296 + (CATG)n Simple_repeat Simple_repeat 3 171 0 1785 155 7 0 chr9 92403460 92403750 -49867694 - AluJb SINE Alu -20 292 1 24 0 0 0 chr9 92403890 92403914 -49867530 + AT_rich Low_complexity Low_complexity 1 24 0 1934 116 7 0 chr9 92405391 92405667 -49865777 - AluSx SINE Alu -7 305 28 180 111 0 0 chr9 92406224 92406251 -49865193 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 220 264 222 14 chr9 92407037 92407181 -49864263 + MER5A DNA MER1_type 9 182 -7 332 236 14 0 chr9 92407799 92407871 -49863573 + MER116 DNA Mariner 3 75 -5 448 204 0 11 chr9 92408755 92408843 -49862601 + MER21B LTR ERV1 1 87 -776 230 146 0 36 chr9 92408917 92408972 -49862472 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 213 39 0 0 chr9 92409031 92409057 -49862387 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 183 302 23 35 chr9 92409263 92409349 -49862095 + L2 LINE L2 3137 3221 -92 846 275 49 93 chr9 92409907 92410442 -49861002 + MER34 LTR ERV1 2 512 -30 2157 196 47 81 chr9 92410749 92411035 -49860409 + LTR9 LTR ERV1 1 295 -317 2104 42 0 8 chr9 92411035 92411296 -49860148 + AluY SINE Alu 44 302 -9 2157 196 47 81 chr9 92411296 92411642 -49859802 + LTR9 LTR ERV1 295 612 0 732 239 122 12 chr9 92413999 92414254 -49857190 + L1ME3A LINE L1 5888 6170 0 1113 178 38 0 chr9 92414721 92414736 -49856708 + L1MB3 LINE L1 5658 5671 -512 2007 132 10 7 chr9 92414736 92415046 -49856398 + AluSx SINE Alu 1 311 -1 1113 178 38 0 chr9 92415046 92415246 -49856198 + L1MB3 LINE L1 5671 5882 -301 1053 113 0 75 chr9 92415246 92415510 -49855934 + MER51B LTR ERV1 1 188 -189 2775 139 18 39 chr9 92415510 92415708 -49855736 - L1M1 LINE L1 -510 6495 6294 2124 114 0 10 chr9 92415708 92416016 -49855428 - AluY SINE Alu -6 305 1 2775 139 18 39 chr9 92416016 92416327 -49855117 - L1M1 LINE L1 -711 6294 5997 * 6219 165 7 1 chr9 92416312 92417443 -49854001 - L1M1 LINE L1 -4156 2693 1556 265 244 47 0 chr9 92417476 92417562 -49853882 - L1MC4 LINE L1 -1339 6703 6614 335 244 22 44 chr9 92417565 92417655 -49853789 + L1MC4 LINE L1 6615 6702 -1340 339 242 0 63 chr9 92417687 92417782 -49853662 + L1MC4 LINE L1 6615 6703 -1339 318 356 0 0 chr9 92417760 92417850 -49853594 - L1MC4 LINE L1 -1339 6703 6614 * 307 271 0 62 chr9 92417786 92417882 -49853562 + L1MC4 LINE L1 6614 6703 -1339 * 444 192 15 31 chr9 92417882 92418012 -49853432 + (TATATG)n Simple_repeat Simple_repeat 6 133 0 311 315 0 22 chr9 92418014 92418106 -49853338 + L1MC4 LINE L1 6614 6703 -1339 * 331 241 8 26 chr9 92418097 92418212 -49853232 + L1MC4 LINE L1 1996 6983 -1339 276 281 0 0 chr9 92418215 92418304 -49853140 + (TA)n Simple_repeat Simple_repeat 2 90 0 4154 245 89 48 chr9 92418304 92419784 -49851660 - L1M2 LINE L1 -5298 1551 11 312 355 48 48 chr9 92420301 92420591 -49850853 - L1MC4 LINE L1 -1840 5968 5679 2415 78 0 0 chr9 92420748 92421054 -49850390 - AluSx SINE Alu -6 306 1 360 269 115 43 chr9 92421056 92421296 -49850148 - L1M4c LINE L1 -5063 1217 956 530 255 103 85 chr9 92421300 92421806 -49849638 + MLT1G1 LTR MaLR 73 587 -8 21 0 0 0 chr9 92423319 92423340 -49848104 + AT_rich Low_complexity Low_complexity 1 21 0 1445 202 40 3 chr9 92425109 92425406 -49846038 + AluJo SINE Alu 1 308 -4 441 296 6 6 chr9 92425610 92425769 -49845675 + L1M4 LINE L1 4423 4581 -1565 207 289 0 0 chr9 92425978 92426061 -49845383 + (TATG)n Simple_repeat Simple_repeat 4 86 0 2134 127 0 3 chr9 92426134 92426448 -49844996 - AluSq SINE Alu 0 313 1 332 324 125 48 chr9 92426462 92426945 -49844499 + L1MC4 LINE L1 6100 6565 -1243 1343 186 93 0 chr9 92427021 92427184 -49844260 - AluJo SINE Alu -2 310 164 246 32 0 0 chr9 92427184 92427215 -49844229 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1343 186 93 0 chr9 92427215 92427330 -49844114 - AluJo SINE Alu -148 164 6 382 42 0 0 chr9 92427402 92427450 -49843994 - MADE1 DNA Mariner 0 80 33 194 200 53 27 chr9 92428315 92428390 -49843054 - MER5C DNA MER1_type -42 282 206 238 263 232 0 chr9 92429570 92429665 -49841779 + L2 LINE L2 3192 3308 -5 198 103 0 0 chr9 92429668 92429697 -49841747 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 26 0 0 0 chr9 92431017 92431043 -49840401 + AT_rich Low_complexity Low_complexity 1 26 0 189 299 175 10 chr9 92431390 92431487 -49839957 - L2 LINE L2 -4 3309 3197 1954 125 25 0 chr9 92432319 92432625 -49838819 - AluSx SINE Alu 0 314 2 558 284 125 18 chr9 92433441 92433973 -49837471 - L1MC4a LINE L1 -1919 5889 5255 345 217 29 51 chr9 92435656 92435794 -49835650 + L1ME3A LINE L1 6032 6166 -4 2534 42 0 3 chr9 92436253 92436560 -49834884 + AluY SINE Alu 1 306 -5 1923 140 0 9 chr9 92436843 92437158 -49834286 + AluSx SINE Alu 1 312 0 730 206 91 15 chr9 92438057 92438256 -49833188 - MER58C DNA MER1_type -1 214 1 255 277 48 12 chr9 92441448 92441531 -49829913 - MIR SINE MIR -59 149 64 195 42 0 0 chr9 92441989 92442013 -49829431 + (CACAA)n Simple_repeat Simple_repeat 4 27 0 813 230 0 19 chr9 92442298 92442459 -49828985 + AluSg/x SINE Alu 136 293 -19 1060 281 89 29 chr9 92442539 92443043 -49828401 + L1ME3A LINE L1 5339 5869 -301 225 277 113 35 chr9 92443251 92443392 -49828052 + L1ME3A LINE L1 6019 6170 0 614 285 90 60 chr9 92445553 92445835 -49825609 + L1MEd LINE L1 621 893 -5226 225 0 0 0 chr9 92445835 92445860 -49825584 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 614 285 90 60 chr9 92445860 92446177 -49825267 + L1MEd LINE L1 893 1238 -4881 471 261 58 0 chr9 92446200 92446338 -49825106 - MIR SINE MIR -54 208 63 668 243 7 0 chr9 92446575 92446715 -49824729 + MER5A DNA MER1_type 21 161 -28 225 108 0 0 chr9 92446716 92446753 -49824691 + (TC)n Simple_repeat Simple_repeat 2 38 0 255 31 0 0 chr9 92446753 92446785 -49824659 + (CA)n Simple_repeat Simple_repeat 1 32 0 363 44 0 0 chr9 92447412 92447457 -49823987 + (TG)n Simple_repeat Simple_repeat 1 45 0 202 300 0 14 chr9 92447479 92447549 -49823895 + G-rich Low_complexity Low_complexity 2 70 0 4643 30 0 0 chr9 92448570 92449103 -49822341 - L1PA3 LINE L1 -3 6152 5620 245 274 38 47 chr9 92449350 92449456 -49821988 - L2 LINE L2 -50 3263 3159 352 252 38 46 chr9 92449549 92449680 -49821764 + L2 LINE L2 3141 3270 -2 328 266 105 8 chr9 92450124 92450248 -49821196 + MER69 DNA AcHobo 62 197 -2329 * 898 224 58 21 chr9 92450245 92450647 -49820797 + MER69 DNA AcHobo 2052 2525 -1 27 20 0 41 chr9 92451904 92451930 -49819514 + AT_rich Low_complexity Low_complexity 1 26 -21 2093 102 3 3 chr9 92451930 92452215 -49819229 - AluSc SINE Alu -24 285 1 27 20 0 41 chr9 92452215 92452237 -49819207 + AT_rich Low_complexity Low_complexity 26 47 0 473 287 37 27 chr9 92452549 92452737 -49818707 - MIR SINE MIR -33 229 40 445 282 235 8 chr9 92453384 92453746 -49817698 + L2 LINE L2 2836 3279 -34 594 107 53 167 chr9 92455777 92455927 -49815517 - FLAM_A SINE Alu 0 133 1 2235 110 0 0 chr9 92457216 92457524 -49813920 + AluSx SINE Alu 1 308 -4 331 311 105 33 chr9 92457524 92457818 -49813626 + L1MC4a LINE L1 5600 5918 -1890 360 0 0 0 chr9 92459653 92459693 -49811751 + (CA)n Simple_repeat Simple_repeat 2 41 0 279 119 32 65 chr9 92459797 92459982 -49811462 + (CA)n Simple_repeat Simple_repeat 1 179 0 188 23 47 47 chr9 92460094 92460137 -49811307 + (CA)n Simple_repeat Simple_repeat 1 43 0 394 85 48 55 chr9 92460200 92460365 -49811079 + (CA)n Simple_repeat Simple_repeat 2 165 0 319 80 43 58 chr9 92460384 92460522 -49810922 + (CA)n Simple_repeat Simple_repeat 2 137 0 422 93 44 58 chr9 92460566 92460910 -49810534 + (CA)n Simple_repeat Simple_repeat 1 339 0 334 112 22 73 chr9 92460951 92461130 -49810314 + (CA)n Simple_repeat Simple_repeat 2 171 0 400 86 35 63 chr9 92461176 92461350 -49810094 + (CA)n Simple_repeat Simple_repeat 2 170 0 250 161 21 65 chr9 92461359 92461452 -49809992 + (CACAC)n Simple_repeat Simple_repeat 1 89 0 631 102 0 0 chr9 92461884 92461972 -49809472 - AluY SINE Alu -179 132 45 391 281 37 69 chr9 92464032 92464249 -49807195 + L2 LINE L2 3093 3302 -11 399 302 40 58 chr9 92464267 92464492 -49806952 + L2 LINE L2 2259 2479 -835 244 275 108 8 chr9 92464653 92464773 -49806671 + L2 LINE L2 2517 2648 -666 1466 136 52 12 chr9 92465256 92465507 -49805937 - Tigger2 DNA MER2_type 0 2718 2458 4010 156 67 24 chr9 92465529 92466139 -49805305 - Tigger2 DNA MER2_type -1920 798 147 2273 78 3 10 chr9 92466139 92466447 -49804997 - AluY SINE Alu -5 306 1 4010 156 67 24 chr9 92466447 92466598 -49804846 - Tigger2 DNA MER2_type -2571 147 4 1000 194 18 53 chr9 92467309 92467536 -49803908 - MER20 DNA MER1_type 0 219 1 1429 161 27 0 chr9 92467587 92467811 -49803633 + MER30 DNA MER1_type 1 230 0 216 247 11 56 chr9 92469048 92469137 -49802307 + L2 LINE L2 3159 3243 -70 1825 229 112 16 chr9 92469208 92469701 -49801743 + MLT1F LTR MaLR 3 542 0 3236 208 25 11 chr9 92470222 92470863 -49800581 + MER82 DNA MER2_type 1 650 -3 2479 63 0 0 chr9 92471570 92471873 -49799571 + AluY SINE Alu 1 303 -8 255 325 25 12 chr9 92472721 92472801 -49798643 - L2 LINE L2 0 3313 3233 208 266 109 103 chr9 92473014 92473151 -49798293 + MER5A DNA MER1_type 5 145 -44 2106 105 3 3 chr9 92473151 92473446 -49797998 - AluSg SINE Alu -15 295 1 208 266 109 103 chr9 92473446 92473492 -49797952 + MER5A DNA MER1_type 145 189 0 26 0 0 0 chr9 92474199 92474225 -49797219 + GC_rich Low_complexity Low_complexity 1 26 0 449 281 58 42 chr9 92476080 92476272 -49795172 - MIR SINE MIR -34 228 33 540 201 182 7 chr9 92476379 92476533 -49794911 + MER5A DNA MER1_type 5 185 -4 7965 231 38 21 chr9 92476964 92479284 -49792160 - L1M4 LINE L1 -1389 4757 2397 711 260 49 31 chr9 92479321 92479544 -49791900 - L1MCb LINE L1 -5482 563 337 1639 222 64 78 chr9 92480497 92480895 -49790549 + MER82 DNA MER2_type 131 533 -120 2545 86 47 0 chr9 92480895 92481234 -49790210 + THE1A LTR MaLR 1 355 0 11910 96 2 3 chr9 92481234 92482813 -49788631 + THE1A-int LTR MaLR 1 1578 -2 2900 81 3 8 chr9 92482814 92483171 -49788273 + THE1A LTR MaLR 1 355 0 1639 222 64 78 chr9 92483171 92483297 -49788147 + MER82 DNA MER2_type 531 651 -2 294 73 0 0 chr9 92484617 92484658 -49786786 + (TC)n Simple_repeat Simple_repeat 2 42 0 342 0 0 0 chr9 92484658 92484696 -49786748 + (CA)n Simple_repeat Simple_repeat 1 38 0 272 289 86 13 chr9 92485176 92485328 -49786116 + HAL1b LINE L1 121 283 -1065 1167 81 43 0 chr9 92485337 92485458 -49785986 + MER30 DNA MER1_type 1 132 -98 216 0 0 0 chr9 92485458 92485482 -49785962 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1167 81 43 0 chr9 92485482 92485521 -49785923 + MER30 DNA MER1_type 132 168 -62 2185 173 22 2 chr9 92485521 92486016 -49785428 + L1MA7 LINE L1 5676 6287 -4 226 49 24 24 chr9 92486448 92486489 -49784955 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 188 306 0 0 chr9 92486509 92486558 -49784886 + MER5B DNA MER1_type 1 49 -129 311 65 22 0 chr9 92487675 92487721 -49783723 + (TG)n Simple_repeat Simple_repeat 2 48 0 464 192 45 129 chr9 92488003 92488227 -49783217 + MER3 DNA MER1_type 1 205 -4 240 308 58 8 chr9 92488870 92488990 -49782454 - MIR SINE MIR -10 252 127 360 0 0 0 chr9 92489760 92489800 -49781644 + (CA)n Simple_repeat Simple_repeat 1 40 0 1828 175 0 25 chr9 92490586 92490906 -49780538 - AluJb SINE Alu 0 312 1 341 266 229 33 chr9 92490941 92491212 -49780232 - L1MC4a LINE L1 -1916 5892 5569 1327 220 30 69 chr9 92492019 92492424 -49779020 + MLT1B LTR MaLR 1 389 -1 261 222 278 0 chr9 92493179 92493269 -49778175 + MIR3 SINE MIR 51 165 -43 999 140 0 0 chr9 92496007 92496150 -49775294 + FLAM_C SINE Alu 1 143 0 377 305 94 47 chr9 92496201 92496712 -49774732 + HAL1 LINE L1 1838 2372 -135 1043 194 122 0 chr9 92498064 92498301 -49773143 + LTR65 LTR ERV1 1 266 -403 683 260 37 80 chr9 92498468 92498768 -49772676 + MER46C DNA MER2_type 9 295 -43 253 254 0 0 chr9 92498786 92498845 -49772599 + Tigger4(Zombi) DNA MER2_type 2656 2714 -17 3267 98 14 0 chr9 92501698 92502126 -49769318 - MER57B LTR ERV1 0 434 1 2402 70 0 10 chr9 92502462 92502760 -49768684 - AluY SINE Alu -16 295 1 4183 166 13 34 chr9 92502761 92503762 -49767682 + L1MC1 LINE L1 5386 6333 0 1445 290 72 11 chr9 92503983 92504734 -49766710 - HAL1b LINE L1 -241 1107 311 2227 88 30 3 chr9 92504757 92505054 -49766390 - AluSq SINE Alu -8 305 1 642 148 9 9 chr9 92505090 92505198 -49766246 - L1MC1 LINE L1 -170 6163 6056 1144 156 146 0 chr9 92506535 92506740 -49764704 - AluSx SINE Alu -18 294 60 21 36 0 0 chr9 92506955 92506983 -49764461 + AT_rich Low_complexity Low_complexity 1 28 0 265 325 16 41 chr9 92507332 92507455 -49763989 + MIR SINE MIR 16 135 -73 24 0 0 0 chr9 92507630 92507654 -49763790 + AT_rich Low_complexity Low_complexity 1 24 0 4182 182 43 37 chr9 92507763 92507898 -49763546 - L1MB8 LINE L1 -1 6988 6855 722 196 0 15 chr9 92507898 92508031 -49763413 - FLAM_C SINE Alu 0 133 3 4182 182 43 37 chr9 92508031 92509291 -49762153 - L1MB8 LINE L1 -134 6855 5583 612 27 0 0 chr9 92509296 92509370 -49762074 + (TTTTA)n Simple_repeat Simple_repeat 1 74 0 6022 19 1 0 chr9 92509370 92510044 -49761400 - L1PA3 LINE L1 -24 6131 5457 3808 164 54 28 chr9 92510044 92510753 -49760691 + LTR8A LTR ERV1 1 727 0 1017 212 103 2 chr9 92510764 92511057 -49760387 - L1MB8 LINE L1 -1380 5577 5261 3216 119 55 18 chr9 92511063 92511656 -49759788 + MER4B LTR ERV1 1 779 0 4191 235 73 68 chr9 92511656 92511806 -49759638 - L1MB8 LINE L1 -5344 1515 1367 2245 124 0 6 chr9 92511806 92512120 -49759324 + AluSx SINE Alu 1 312 0 4191 235 73 68 chr9 92512120 92513467 -49757977 - L1MB8 LINE L1 -5492 1367 10 24 32 0 0 chr9 92514744 92514775 -49756669 + AT_rich Low_complexity Low_complexity 1 31 0 496 287 73 33 chr9 92514956 92515228 -49756216 - L1ME LINE L1 -302 5819 5537 326 275 145 8 chr9 92515230 92515361 -49756083 + MER91A DNA MER1_type 21 169 -27 231 265 37 22 chr9 92515502 92515649 -49755795 - L1P5 LINE L1 -698 5456 5309 1982 122 21 7 chr9 92515861 92516148 -49755296 - AluSg SINE Alu -19 291 1 355 256 141 50 chr9 92516152 92516414 -49755030 - L1ME LINE L1 -1127 5019 4734 601 233 30 0 chr9 92516975 92517108 -49754336 + MIR SINE MIR 2 138 -124 1271 205 186 35 chr9 92517112 92517537 -49753907 + MLT1H1 LTR MaLR 67 555 0 2164 191 16 11 chr9 92517560 92517994 -49753450 - MER45B DNA AcHobo -1 1039 604 2444 207 115 40 chr9 92518578 92519250 -49752194 + MER72 LTR ERV1 1 722 0 2186 113 3 0 chr9 92519359 92519671 -49751773 + AluSp SINE Alu 1 313 0 250 290 97 45 chr9 92519864 92520019 -49751425 - L2 LINE L2 -5 3308 3146 5576 123 37 37 chr9 92520023 92520161 -49751283 + MER4B-int LTR ERV1 5371 5508 -1250 5108 52 3 3 chr9 92520161 92520751 -49750693 + LTR10C LTR ERV1 1 590 -1 5576 123 37 37 chr9 92520751 92521559 -49749885 + MER4B-int LTR ERV1 5507 6317 -441 2091 99 37 0 chr9 92521559 92521858 -49749586 - AluSg SINE Alu 0 309 1 2439 123 12 47 chr9 92521947 92522355 -49749089 + MER4B-int LTR ERV1 6365 6758 0 2406 98 141 95 chr9 92522355 92522939 -49748505 + MER4B LTR ERV1 1 774 -5 303 253 101 0 chr9 92522947 92523026 -49748418 - L1ME1 LINE L1 -90 6076 5990 1164 124 11 22 chr9 92523052 92523230 -49748214 + AluSc SINE Alu 119 294 -15 287 187 9 93 chr9 92523231 92523338 -49748106 - L1ME3 LINE L1 -192 5970 5873 318 212 0 0 chr9 92523342 92523408 -49748036 - L1ME3 LINE L1 -264 5906 5841 3109 221 33 36 chr9 92523450 92524004 -49747440 + MER21B LTR ERV1 12 566 -297 2182 73 0 28 chr9 92524004 92524331 -49747113 - AluSc SINE Alu 0 319 1 3109 221 33 36 chr9 92524331 92524500 -49746944 + MER21B LTR ERV1 566 734 -129 4243 232 60 28 chr9 92524592 92526334 -49745110 - L1ME3 LINE L1 -389 5775 3979 422 253 182 12 chr9 92526440 92526610 -49744834 - MIR SINE MIR -33 229 31 292 375 73 0 chr9 92527224 92527416 -49744028 - MIR SINE MIR 0 262 57 431 247 101 57 chr9 92528320 92528543 -49742901 - MIR SINE MIR 0 262 34 728 256 66 5 chr9 92529557 92529768 -49741676 - MIR SINE MIR -18 244 21 686 280 152 12 chr9 92529981 92530317 -49741127 + LTR16C LTR ERVL 97 479 -12 640 262 54 0 chr9 92530847 92531015 -49740429 - MIR SINE MIR -18 244 68 3427 138 35 43 chr9 92531043 92531464 -49739980 + LTR49 LTR ERV1 1 417 -178 1609 158 17 38 chr9 92531464 92531756 -49739688 + AluJo SINE Alu 1 286 -26 3427 138 35 43 chr9 92531756 92531934 -49739510 + LTR49 LTR ERV1 417 595 0 1563 224 162 3 chr9 92532437 92532825 -49738619 + MER66A LTR ERV1 29 478 0 2879 161 9 7 chr9 92532833 92533281 -49738163 + MER4D-int LTR ERV1 1712 2160 -4516 * 5512 223 16 19 chr9 92533252 92534393 -49737051 + MER4D-int LTR ERV1 2314 3450 -3226 3978 168 31 38 chr9 92534394 92535383 -49736061 + MER4D-int LTR ERV1 3142 4330 -2346 272 303 57 16 chr9 92535378 92535500 -49735944 + MER4D-int LTR ERV1 4053 4179 -2152 * 741 159 11 108 chr9 92535632 92535808 -49735636 + MER4D-int LTR ERV1 3786 3944 -4176 265 160 0 0 chr9 92535946 92535996 -49735448 + MER4D-int LTR ERV1 4593 4642 -1304 591 230 56 8 chr9 92535997 92536141 -49735303 + MER4D-int LTR ERV1 3950 6130 -628 * 974 207 118 17 chr9 92536135 92536372 -49735072 + MER4D-int LTR ERV1 6376 6636 -122 291 244 58 35 chr9 92536386 92536472 -49734972 + MER4D LTR ERV1 73 160 -712 14789 121 11 5 chr9 92536473 92538579 -49732865 + MER66A-int LTR ERV1 4558 6676 0 1742 187 126 28 chr9 92538814 92539210 -49732234 + MER66A LTR ERV1 44 478 0 1799 208 101 30 chr9 92539343 92540488 -49730956 - SATR1 Satellite Satellite -20 1226 1 343 225 11 50 chr9 92540582 92540764 -49730680 + (TTA)n Simple_repeat Simple_repeat 2 176 0 23 54 0 0 chr9 92540817 92540854 -49730590 + AT_rich Low_complexity Low_complexity 1 37 0 2230 188 106 15 chr9 92540857 92542914 -49728530 - SATR1 Satellite Satellite -1 2242 1 29 78 0 0 chr9 92542969 92543033 -49728411 + AT_rich Low_complexity Low_complexity 1 64 0 303 168 8 64 chr9 92543091 92543216 -49728228 + (TTA)n Simple_repeat Simple_repeat 1 118 0 29460 93 15 11 chr9 92543270 92547313 -49724131 + HERVE LTR ERV1 1108 5164 -2649 2321 168 108 6 chr9 92547314 92548780 -49722664 - SATR1 Satellite Satellite 0 1615 1 2032 194 141 7 chr9 92548811 92549469 -49721975 - SATR1 Satellite Satellite -5 746 1 990 161 38 33 chr9 92549471 92549682 -49721762 - AluSq SINE Alu -89 224 13 428 179 0 13 chr9 92551026 92551104 -49720340 + MER8 DNA MER2_type 163 239 0 539 275 84 6 chr9 92551614 92551781 -49719663 + MER5A DNA MER1_type 1 180 -9 1974 150 72 8 chr9 92552002 92552369 -49719075 + MLT1B LTR MaLR 1 396 0 193 294 87 33 chr9 92553607 92553699 -49717745 - MIR SINE MIR -118 144 48 1866 216 15 13 chr9 92553832 92554226 -49717218 + MLT1F LTR MaLR 72 466 -76 527 297 109 10 chr9 92554526 92554839 -49716605 + L2 LINE L2 2459 2802 -512 182 312 43 36 chr9 92554854 92554992 -49716452 + L2 LINE L2 2922 3060 -253 1077 216 23 59 chr9 92555048 92555353 -49716091 - MLT1A2 LTR MaLR -80 294 1 180 377 0 0 chr9 92555439 92555508 -49715936 + L2 LINE L2 3245 3313 0 1388 240 121 20 chr9 92555777 92556265 -49715179 - MLT1H LTR MaLR -10 539 3 244 159 133 0 chr9 92556265 92556323 -49715121 - MIR SINE MIR -65 143 84 781 166 6 46 chr9 92556930 92557105 -49714339 + L1MA7 LINE L1 6121 6288 -3 1064 236 5 0 chr9 92557352 92557568 -49713876 + MER58A DNA MER1_type 1 217 -7 840 176 30 149 chr9 92558398 92558733 -49712711 + MER51C LTR ERV1 346 640 0 781 313 108 25 chr9 92559246 92559681 -49711763 + MLT1L LTR MaLR 120 590 -25 1279 145 54 21 chr9 92559928 92560170 -49711274 + AluJo SINE Alu 61 310 -2 507 319 71 6 chr9 92560532 92560868 -49710576 + L1ME3A LINE L1 4875 5232 -914 662 293 165 43 chr9 92560970 92561650 -49709794 + L1ME3A LINE L1 5407 6169 -1 311 316 79 26 chr9 92562027 92562179 -49709265 - MLT1G1 LTR MaLR 0 588 383 376 264 110 31 chr9 92563499 92563662 -49707782 - MIR SINE MIR -6 256 81 313 260 68 0 chr9 92564325 92564398 -49707046 - L2 LINE L2 0 3272 3195 2380 71 0 3 chr9 92564510 92564818 -49706626 - AluY SINE Alu -4 307 1 2382 69 0 7 chr9 92565692 92565998 -49705446 - AluY SINE Alu -7 304 1 305 315 56 43 chr9 92566011 92566173 -49705271 + L1 LINE L1 2863 3026 -3120 690 300 152 18 chr9 92566179 92566522 -49704922 - L2 LINE L2 0 3313 2925 1371 275 86 98 chr9 92566720 92567962 -49703482 - L2 LINE L2 -1567 1747 521 321 89 0 0 chr9 92568329 92568374 -49703070 + (T)n Simple_repeat Simple_repeat 1 45 0 512 325 95 4 chr9 92568534 92568786 -49702658 - L2 LINE L2 0 3313 3039 355 284 276 35 chr9 92568852 92569476 -49701968 - L2 LINE L2 -425 2889 2116 8997 108 26 2 chr9 92569564 92570818 -49700626 - HSMAR1 DNA Mariner -2 1285 1 302 253 140 53 chr9 92571148 92571298 -49700146 - MIR SINE MIR -7 255 93 2013 117 10 3 chr9 92572691 92572981 -49698463 + AluSg SINE Alu 1 292 -18 303 28 0 0 chr9 92573123 92573159 -49698285 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 1737 169 7 7 chr9 92573161 92573469 -49697975 - AluJb SINE Alu -2 310 3 427 310 70 15 chr9 92573950 92574427 -49697017 + MLT1E2 LTR MaLR 1 611 -15 1992 191 3 19 chr9 92575627 92575998 -49695446 - MLT1A1 LTR MaLR 0 365 1 2608 108 8 3 chr9 92576253 92576615 -49694829 + THE1B LTR MaLR 1 364 0 198 0 0 0 chr9 92576953 92576975 -49694469 + (A)n Simple_repeat Simple_repeat 1 22 0 349 304 87 12 chr9 92577376 92577537 -49693907 - MIR SINE MIR -10 252 80 2113 154 27 70 chr9 92578637 92579111 -49692333 - MLT2C2 LTR ERVL -10 454 1 655 214 254 18 chr9 92580082 92580357 -49691087 - MLT1G LTR MaLR 0 590 251 334 270 40 24 chr9 92580455 92580581 -49690863 - MLT1G LTR MaLR -467 128 1 707 210 98 54 chr9 92581406 92581611 -49689833 - MLT1J LTR MaLR -294 217 4 499 235 229 11 chr9 92581876 92582055 -49689389 + MIR SINE MIR 31 248 -14 188 299 149 0 chr9 92582868 92582935 -49688509 - MIR SINE MIR -74 188 112 185 250 17 0 chr9 92583047 92583107 -49688337 + GA-rich Low_complexity Low_complexity 3 63 0 660 164 0 0 chr9 92584460 92584564 -49686880 + AluSp SINE Alu 2 105 -208 884 122 0 0 chr9 92585945 92586076 -49685368 + AluY SINE Alu 180 310 -1 1963 137 9 37 chr9 92586286 92586471 -49684973 - AluSx SINE Alu 0 312 138 2188 115 3 3 chr9 92586471 92586783 -49684661 - AluSx SINE Alu 0 312 1 1963 137 9 37 chr9 92586783 92586918 -49684526 - AluSx SINE Alu -174 138 1 773 240 29 20 chr9 92587172 92587376 -49684068 + Charlie4 DNA MER1_type 19 224 -1737 240 178 0 0 chr9 92587689 92587734 -49683710 - MIR SINE MIR -139 123 79 243 328 93 40 chr9 92588572 92588874 -49682570 + L2 LINE L2 2991 3308 -5 2298 190 36 57 chr9 92590493 92591024 -49680420 - MLT2B1 LTR ERVL 0 520 1 1269 213 80 25 chr9 92591464 92591788 -49679656 + MER2 DNA MER2_type 3 344 0 342 286 38 0 chr9 92592872 92592977 -49678467 - L1MD3 LINE L1 -8 7987 7879 290 374 11 6 chr9 92592995 92593174 -49678270 - MIR SINE MIR -80 182 3 316 294 119 23 chr9 92593180 92593615 -49677829 + L1MC4a LINE L1 4142 4618 -1528 238 196 103 113 chr9 92593619 92593823 -49677621 - L1MC4 LINE L1 -4 8038 7837 1237 255 25 28 chr9 92593864 92594295 -49677149 - L1ME2 LINE L1 -10 6154 5725 1960 79 115 11 chr9 92594472 92594751 -49676693 + AluSc SINE Alu 1 308 -1 230 324 19 9 chr9 92595131 92595239 -49676205 + L1M1 LINE L1 5326 5434 -869 2202 121 0 3 chr9 92595261 92595558 -49675886 - AluSx SINE Alu -16 296 1 457 266 113 40 chr9 92595703 92596004 -49675440 + L1MC4a LINE L1 5668 5851 -333 25 0 0 0 chr9 92596174 92596199 -49675245 + AT_rich Low_complexity Low_complexity 1 25 0 2204 113 0 0 chr9 92596353 92596635 -49674809 - AluSx SINE Alu -20 292 11 207 242 0 0 chr9 92596961 92597023 -49674421 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 2238 107 0 0 chr9 92598175 92598473 -49672971 + AluSx SINE Alu 1 298 -14 276 102 0 0 chr9 92599601 92599650 -49671794 + (CA)n Simple_repeat Simple_repeat 1 49 0 354 191 34 22 chr9 92600056 92600145 -49671299 + MLT1G1 LTR MaLR 506 595 0 27 92 0 0 chr9 92600393 92600469 -49670975 + AT_rich Low_complexity Low_complexity 1 76 0 311 277 108 13 chr9 92601247 92601486 -49669958 + MLT1G1 LTR MaLR 2 270 -285 268 219 185 68 chr9 92601544 92601690 -49669754 + MLT1G1 LTR MaLR 393 595 0 261 273 130 26 chr9 92602067 92602221 -49669223 + MIR SINE MIR 88 257 -5 2402 225 47 40 chr9 92602337 92602767 -49668677 - MLT1E2 LTR MaLR -2 624 187 1697 178 7 20 chr9 92602767 92603070 -49668374 - L1PB4 LINE L1 -13 6143 5845 2402 225 47 40 chr9 92603070 92603257 -49668187 - MLT1E2 LTR MaLR -439 187 3 683 219 57 132 chr9 92603266 92603690 -49667754 - MLT1E2-int LTR MaLR -7 1364 973 244 256 39 26 chr9 92603932 92604010 -49667434 - MLT1E2-int LTR MaLR -590 781 703 1537 264 76 7 chr9 92604228 92604663 -49666781 - MLT1E2-int LTR MaLR -766 605 141 1222 255 24 0 chr9 92604663 92604957 -49666487 - ERVL LTR ERVL -4582 1182 882 661 281 31 45 chr9 92605035 92605059 -49666385 - ERVL LTR ERVL -5062 702 679 2576 199 52 7 chr9 92605059 92605597 -49665847 - MER68 LTR ERV1 0 562 1 661 281 31 45 chr9 92605597 92605796 -49665648 - ERVL LTR ERVL -5085 679 482 1533 258 65 10 chr9 92605800 92606215 -49665229 + MER20B DNA MER1_type 70 507 -276 441 0 0 0 chr9 92606220 92606269 -49665175 + (TG)n Simple_repeat Simple_repeat 2 50 0 12933 74 4 0 chr9 92606408 92608878 -49662566 - L1PA7 LINE L1 0 6154 3687 828 245 200 56 chr9 92608914 92609399 -49662045 - MLT1H1 LTR MaLR 0 555 1 2343 120 34 22 chr9 92610064 92610422 -49661022 + THE1B LTR MaLR 3 364 0 597 110 0 0 chr9 92610492 92610583 -49660861 + (TA)n Simple_repeat Simple_repeat 2 92 0 26 74 0 0 chr9 92610618 92610672 -49660772 + AT_rich Low_complexity Low_complexity 1 54 0 3203 158 16 53 chr9 92610672 92611299 -49660145 + MER6A DNA MER2_type 2 605 0 274 164 45 0 chr9 92611412 92611479 -49659965 + MER20B DNA MER1_type 574 643 -140 916 239 88 38 chr9 92611709 92612284 -49659160 - MLT1G3 LTR MaLR 0 593 5 300 175 0 0 chr9 92612705 92612768 -49658676 + (TG)n Simple_repeat Simple_repeat 1 63 0 27 29 0 0 chr9 92615061 92615095 -49656349 + AT_rich Low_complexity Low_complexity 1 34 0 2163 117 0 7 chr9 92615325 92615623 -49655821 + AluSc SINE Alu 1 296 -13 694 255 122 0 chr9 92615919 92616115 -49655329 - MER58A DNA MER1_type 0 224 5 1503 294 75 16 chr9 92616207 92616782 -49654662 - ERVL LTR ERVL -3086 2678 2070 364 270 49 32 chr9 92616825 92617010 -49654434 - ERVL LTR ERVL -3686 1968 1781 572 278 127 5 chr9 92617934 92618139 -49653305 + MIR SINE MIR 20 249 -13 239 246 0 18 chr9 92618456 92618513 -49652931 + CT-rich Low_complexity Low_complexity 2 57 0 232 119 0 0 chr9 92619692 92619734 -49651710 + L1MA9 LINE L1 6236 6277 -35 317 235 128 27 chr9 92619900 92620049 -49651395 - L1MC5 LINE L1 -173 7788 7625 350 306 78 29 chr9 92620080 92620428 -49651016 + L1MEc LINE L1 1124 1529 -5058 1594 274 66 38 chr9 92620632 92621539 -49649905 + L1MEc LINE L1 3065 3997 -2409 1512 169 40 0 chr9 92621546 92621847 -49649597 + L1MA4 LINE L1 5988 6300 0 315 314 81 14 chr9 92622266 92622685 -49648759 - L1MC/D LINE L1 -528 5593 5327 382 327 94 28 chr9 92622687 92622985 -49648459 - L1MC/D LINE L1 -823 5323 4995 2592 96 85 10 chr9 92622985 92623383 -49648061 + MSTA LTR MaLR 1 428 0 382 327 94 28 chr9 92623383 92623445 -49647999 - L1MC/D LINE L1 -1151 4995 4939 426 307 119 18 chr9 92623477 92623695 -49647749 + MLT1L LTR MaLR 35 274 -341 250 316 93 45 chr9 92624286 92624662 -49646782 - L1MC/D LINE L1 -2090 4056 3663 27 0 0 0 chr9 92624686 92624713 -49646731 + AT_rich Low_complexity Low_complexity 1 27 0 184 402 11 0 chr9 92625830 92625917 -49645527 - L2 LINE L2 -48 3224 3137 697 273 103 45 chr9 92625965 92626449 -49644995 + MLT1G1 LTR MaLR 14 549 0 724 278 13 9 chr9 92628151 92628381 -49643063 + MIR SINE MIR 1 231 -31 22 56 0 0 chr9 92628859 92628895 -49642549 + AT_rich Low_complexity Low_complexity 1 36 0 4228 139 12 10 chr9 92629073 92629765 -49641679 - L1MA8 LINE L1 -4 6287 5595 374 272 104 35 chr9 92629792 92629965 -49641479 - MIR SINE MIR -13 249 65 454 164 43 17 chr9 92629965 92630081 -49641363 + L1MA10 LINE L1 6215 6333 -1 1343 167 27 11 chr9 92630139 92630403 -49641041 + L1MA5 LINE L1 5980 6254 -46 1227 165 0 0 chr9 92630411 92630611 -49640833 + L1PB1 LINE L1 1 200 -6663 * 15836 171 29 14 chr9 92630589 92630833 -49640611 + L1PB1 LINE L1 602 841 -6026 684 141 23 16 chr9 92630833 92630961 -49640483 - L1MA8 LINE L1 -4 6287 6159 15836 171 29 14 chr9 92630961 92633570 -49637874 + L1PB1 LINE L1 841 3409 -3458 2136 98 10 14 chr9 92633570 92633865 -49637579 + AluSp SINE Alu 1 294 -19 15836 171 29 14 chr9 92633865 92636861 -49634583 + L1PB1 LINE L1 3409 6742 -125 358 70 0 0 chr9 92636891 92636948 -49634496 + L1MA6 LINE L1 6242 6298 -2 869 252 26 98 chr9 92637343 92637843 -49633601 + HAL1 LINE L1 800 1263 -1244 559 179 80 9 chr9 92637845 92637957 -49633487 + MER21B LTR ERV1 326 445 -418 425 299 55 18 chr9 92638501 92638665 -49632779 + MIR SINE MIR 81 250 -12 368 230 35 75 chr9 92638737 92638780 -49632664 + MLT1J LTR MaLR 1 44 -467 2134 115 0 0 chr9 92638780 92639085 -49632359 - AluSg1 SINE Alu -4 305 1 368 230 35 75 chr9 92639085 92639215 -49632229 + MLT1J LTR MaLR 44 167 -344 377 273 107 0 chr9 92639460 92639610 -49631834 + HAL1 LINE L1 1260 1425 -1082 1690 97 35 12 chr9 92640913 92641170 -49630274 + AluSx SINE Alu 35 297 -15 350 203 258 39 chr9 92641534 92641788 -49629656 + MLT1G LTR MaLR 4 322 -273 332 228 13 0 chr9 92641847 92641926 -49629518 + MLT1G LTR MaLR 391 470 -72 2242 171 20 39 chr9 92643674 92643715 -49627729 + MSTB1 LTR MaLR 1 41 -391 1871 131 3 11 chr9 92643715 92644031 -49627413 + AluSx SINE Alu 1 314 0 2242 171 20 39 chr9 92644031 92644427 -49627017 + MSTB1 LTR MaLR 41 431 -1 425 108 15 0 chr9 92644442 92644507 -49626937 + MSTB1 LTR MaLR 366 431 -1 494 60 36 72 chr9 92644751 92644834 -49626610 - MADE1 DNA Mariner 0 80 1 268 227 235 17 chr9 92645092 92645211 -49626233 - MIR SINE MIR -36 226 82 1988 145 0 0 chr9 92645894 92646191 -49625253 - AluSx SINE Alu -15 297 1 447 226 166 85 chr9 92646749 92646948 -49624496 + MER58C DNA MER1_type 1 215 0 2090 129 0 0 chr9 92647349 92647652 -49623792 + AluSx SINE Alu 1 303 -9 1961 144 0 10 chr9 92648121 92648433 -49623011 - AluSx SINE Alu -3 309 1 297 262 29 4 chr9 92651687 92651965 -49619479 + (TG)n Simple_repeat Simple_repeat 1 285 0 195 195 0 39 chr9 92652645 92652722 -49618722 + (CA)n Simple_repeat Simple_repeat 1 74 0 268 398 74 0 chr9 92653647 92653891 -49617553 + L2 LINE L2 2104 2365 -949 1658 149 0 41 chr9 92653952 92654274 -49617170 - AluSx SINE Alu 0 310 1 2775 161 36 43 chr9 92654290 92654584 -49616860 + MER44D DNA MER2_type 2 297 -2190 2246 88 0 3 chr9 92654584 92654880 -49616564 - AluSq SINE Alu -18 295 1 2775 161 36 43 chr9 92654880 92655138 -49616306 + MER44D DNA MER2_type 297 605 0 1257 253 75 5 chr9 92655152 92655540 -49615904 - L1MD3 LINE L1 -13 7982 7568 747 208 70 62 chr9 92655543 92655784 -49615660 + MER96B DNA MER1_type? 168 410 -7 460 171 9 99 chr9 92656204 92656315 -49615129 - MER96B DNA MER1_type? -7 410 310 1053 208 76 61 chr9 92657043 92657359 -49614085 + LTR56 LTR ERV1 11 303 -134 258 32 0 0 chr9 92657359 92657390 -49614054 + (CA)n Simple_repeat Simple_repeat 2 32 0 1053 208 76 61 chr9 92657390 92657528 -49613916 + LTR56 LTR ERV1 303 437 0 187 158 26 0 chr9 92657600 92657638 -49613806 - MIR SINE MIR -215 47 9 407 230 20 0 chr9 92658084 92658184 -49613260 - MER53 DNA DNA -85 104 3 242 188 109 79 chr9 92658254 92658355 -49613089 - L1MC4 LINE L1 0 8042 7939 233 233 0 0 chr9 92658359 92658402 -49613042 + polypyrimidine Low_complexity Low_complexity 2 44 0 2252 92 0 3 chr9 92659583 92659889 -49611555 + AluSc SINE Alu 1 305 -4 212 222 48 95 chr9 92659968 92660031 -49611413 + L2 LINE L2 3246 3305 -8 2032 155 0 0 chr9 92660062 92660372 -49611072 + AluSx SINE Alu 1 310 -2 771 289 73 0 chr9 92660695 92660927 -49610517 - MIR SINE MIR -1 261 13 256 292 39 3 chr9 92661518 92661626 -49609818 + MIR SINE MIR 41 154 -62 554 176 0 0 chr9 92661630 92661715 -49609729 - Tigger7 DNA MER2_type 0 2487 2403 2126 179 38 0 chr9 92661715 92662106 -49609338 - Tigger7 DNA MER2_type -152 581 176 260 269 221 0 chr9 92662108 92662212 -49609232 + L2 LINE L2 3146 3272 0 201 250 0 0 chr9 92662216 92662252 -49609192 + L3 LINE CR1 1526 1561 -16 342 232 128 8 chr9 92662328 92662453 -49608991 + L1M4 LINE L1 4142 4281 -1865 * 13443 201 44 31 chr9 92662444 92662690 -49608754 + L1MB1 LINE L1 2932 3173 -4435 2390 76 3 0 chr9 92662690 92662994 -49608450 + AluSp SINE Alu 1 305 -8 13443 201 44 31 chr9 92662994 92665433 -49606011 + L1MB1 LINE L1 3173 5695 -1913 363 23 0 0 chr9 92665433 92665477 -49605967 + (CA)n Simple_repeat Simple_repeat 2 45 0 13443 201 44 31 chr9 92665477 92667325 -49604119 + L1MB1 LINE L1 5695 7516 -92 3382 97 4 12 chr9 92667722 92668215 -49603229 + L1PA13 LINE L1 5675 6163 0 785 270 93 14 chr9 92668245 92668787 -49602657 - L1ME LINE L1 -380 5782 5193 234 0 0 0 chr9 92668791 92668817 -49602627 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 768 240 0 0 chr9 92668820 92668966 -49602478 - FRAM SINE Alu -30 146 1 925 315 101 25 chr9 92668998 92670984 -49600460 - L1ME LINE L1 -983 5163 2965 2852 132 7 2 chr9 92670984 92671407 -49600037 + MSTA LTR MaLR 1 425 -3 925 315 101 25 chr9 92671407 92671452 -49599992 - L1ME LINE L1 -3181 2965 2925 380 279 32 58 chr9 92671490 92671644 -49599800 - L1ME LINE L1 -3328 2818 2669 1904 131 0 27 chr9 92672157 92672454 -49598990 - AluSx SINE Alu -18 294 6 263 308 47 0 chr9 92672907 92673014 -49598430 + MLT1J2 LTR MaLR 33 144 -306 398 119 0 0 chr9 92673149 92673208 -49598236 - MLT1I LTR MaLR -32 377 319 373 314 16 32 chr9 92673280 92673532 -49597912 + L1ME4a LINE L1 5672 5919 -202 264 227 152 0 chr9 92674734 92674800 -49596644 - L2 LINE L2 -2 3311 3236 1015 312 38 26 chr9 92675183 92675606 -49595838 - LTR16B LTR ERVL 0 464 37 1018 64 14 7 chr9 92675751 92675891 -49595553 - MER4C LTR ERV1 -324 141 1 1038 201 86 26 chr9 92675896 92676165 -49595279 + LTR40b LTR ERVL 174 458 -4 1047 183 145 50 chr9 92677303 92677480 -49593964 - L1MD2 LINE L1 -8 6351 6192 297 89 0 0 chr9 92677480 92677525 -49593919 + (TG)n Simple_repeat Simple_repeat 2 46 0 1047 183 145 50 chr9 92677525 92677664 -49593780 - L1MD2 LINE L1 -167 6192 6005 2298 159 33 23 chr9 92677699 92678126 -49593318 + L1MD1 LINE L1 5530 5960 -282 730 269 246 24 chr9 92678361 92678852 -49592592 + MLT2E LTR ERVL 20 619 -9 1669 203 16 14 chr9 92681187 92681559 -49589885 + Tigger3(Golem) DNA MER2_type 1 3029 0 238 0 286 0 chr9 92681648 92681683 -49589761 - MLT2D LTR ERVL 0 414 370 229 220 8 75 chr9 92681754 92681876 -49589568 - MLT2B1 LTR ERVL -127 393 236 1739 103 4 4 chr9 92681877 92682120 -49589324 + AluSp SINE Alu 6 248 -65 771 87 0 0 chr9 92682120 92682223 -49589221 + AluSp/q SINE Alu 201 303 -10 943 145 159 6 chr9 92682249 92682455 -49588989 - MLT2B1 LTR ERVL -183 231 2 271 244 44 56 chr9 92682577 92682667 -49588777 - MLT1G1 LTR MaLR -38 517 429 530 265 64 67 chr9 92682725 92683038 -49588406 - MLT1G1 LTR MaLR -275 320 9 2296 121 118 18 chr9 92683060 92683449 -49587995 - MSTA LTR MaLR 0 428 1 394 215 13 0 chr9 92683458 92683537 -49587907 + Charlie4 DNA MER1_type 1862 1941 -20 1830 114 3 50 chr9 92683710 92684033 -49587411 - AluSx SINE Alu 0 309 1 1836 155 0 0 chr9 92684060 92684356 -49587088 + AluSx SINE Alu 1 296 -16 203 59 0 29 chr9 92685257 92685291 -49586153 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 2248 87 3 0 chr9 92685751 92686049 -49585395 + AluSp SINE Alu 1 299 -14 24 0 0 0 chr9 92688412 92688436 -49583008 + AT_rich Low_complexity Low_complexity 1 24 0 269 329 163 19 chr9 92688757 92689329 -49582115 + L2 LINE L2 1256 1909 -1405 634 277 143 59 chr9 92689348 92689608 -49581836 - L2 LINE L2 -761 2553 2316 1573 189 45 0 chr9 92689608 92689899 -49581545 + AluJb SINE Alu 1 304 -8 634 277 143 59 chr9 92689899 92690143 -49581301 - L2 LINE L2 -998 2316 2007 2078 178 58 8 chr9 92690247 92690624 -49580820 - MSTD LTR MaLR 0 396 1 2018 156 73 52 chr9 92691900 92692322 -49579122 + MER4B LTR ERV1 1 431 -179 1493 115 51 0 chr9 92692348 92692565 -49578879 - AluSx SINE Alu -84 228 1 1480 100 0 5 chr9 92692565 92692765 -49578679 + MER4E LTR ERV1 568 766 0 296 284 86 43 chr9 92692827 92692943 -49578501 + MER5A DNA MER1_type 13 133 -56 4006 179 47 18 chr9 92693694 92694116 -49577328 + L1MD1 LINE L1 5365 5773 -469 4781 146 85 7 chr9 92694116 92694954 -49576490 - MER4D LTR ERV1 0 903 1 4006 179 47 18 chr9 92694954 92695384 -49576060 + L1MD1 LINE L1 5773 6242 0 2449 55 0 3 chr9 92695618 92695929 -49575515 - AluY SINE Alu -1 310 1 2083 95 3 55 chr9 92696233 92696558 -49574886 - AluSx SINE Alu -4 308 1 1994 166 128 49 chr9 92697016 92697626 -49573818 - MER4D LTR ERV1 -2 901 1 615 240 7 19 chr9 92697626 92697779 -49573665 - MLT1F LTR MaLR -11 531 381 2291 82 7 0 chr9 92697807 92698113 -49573331 + AluSp SINE Alu 1 308 -5 1833 206 31 17 chr9 92698160 92698512 -49572932 + MER21B LTR ERV1 15 371 -492 1251 192 107 69 chr9 92698512 92698934 -49572510 - LTR8A LTR ERV1 0 727 290 344 222 31 142 chr9 92699116 92699278 -49572166 - LTR8 LTR ERV1 -547 144 1 2098 201 56 62 chr9 92699278 92699337 -49572107 + MER21B LTR ERV1 368 426 -437 3007 66 121 0 chr9 92699337 92699692 -49571752 + MLT2A1 LTR ERVL 1 410 -34 208 53 53 0 chr9 92699692 92699730 -49571714 + (TA)n Simple_repeat Simple_repeat 2 41 0 3007 66 121 0 chr9 92699730 92699770 -49571674 + MLT2A1 LTR ERVL 410 444 0 2098 201 56 62 chr9 92699770 92700208 -49571236 + MER21B LTR ERV1 426 862 -1 801 253 114 0 chr9 92700222 92700467 -49570977 + L1MB7 LINE L1 5902 6174 -10 1501 213 90 12 chr9 92700497 92700840 -49570604 - MLT1F LTR MaLR -168 374 5 312 27 0 0 chr9 92700971 92701008 -49570436 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 697 229 0 0 chr9 92701009 92701127 -49570317 - FLAM_C SINE Alu -24 119 2 342 0 0 0 chr9 92701168 92701206 -49570238 + (TG)n Simple_repeat Simple_repeat 1 38 0 270 0 0 0 chr9 92701205 92701235 -49570209 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1056 239 42 10 chr9 92701479 92701785 -49569659 - L1M4 LINE L1 -1304 4842 4527 1839 143 0 11 chr9 92704192 92704502 -49566942 + AluSx SINE Alu 1 307 0 1506 90 5 0 chr9 92704502 92704702 -49566742 + AluSg SINE Alu 1 201 -109 18721 143 26 40 chr9 92704730 92705972 -49565472 + L1M1 LINE L1 196 1454 -6111 2678 99 6 6 chr9 92705972 92706336 -49565108 + THE1B LTR MaLR 1 364 0 18721 143 26 40 chr9 92706336 92708346 -49563098 + L1M1 LINE L1 1454 3402 -4163 2006 142 62 3 chr9 92709628 92709967 -49561477 - MLT1B LTR MaLR -31 359 1 941 264 35 19 chr9 92710716 92710867 -49560577 + MIR SINE MIR 1 159 -103 1887 176 23 29 chr9 92710867 92711213 -49560231 - MER2 DNA MER2_type 0 344 1 941 264 35 19 chr9 92711213 92711319 -49560125 + MIR SINE MIR 159 262 0 2257 131 6 29 chr9 92711830 92712174 -49559270 + MER1B DNA MER1_type 2 337 0 387 41 0 0 chr9 92713318 92713367 -49558077 + (TC)n Simple_repeat Simple_repeat 1 49 0 369 0 0 0 chr9 92713892 92713933 -49557511 + (CA)n Simple_repeat Simple_repeat 1 41 0 757 266 157 30 chr9 92715379 92715717 -49555727 - LTR16C LTR ERVL 0 491 111 353 309 36 0 chr9 92716166 92716276 -49555168 + MLT1G1 LTR MaLR 3 116 -479 2612 129 8 0 chr9 92716276 92716657 -49554787 + MLT1B LTR MaLR 1 384 -6 561 230 162 72 chr9 92716663 92716957 -49554487 + MLT1G3 LTR MaLR 34 366 -176 403 257 50 0 chr9 92716960 92717061 -49554383 + MLT1G3 LTR MaLR 482 587 -3 258 295 28 0 chr9 92717066 92717167 -49554277 - MIR SINE MIR -38 170 66 1984 104 0 0 chr9 92717537 92717837 -49553607 - AluSx SINE Alu 0 315 16 315 325 18 0 chr9 92719124 92719238 -49552206 - MER5B DNA MER1_type -1 177 62 6809 120 24 14 chr9 92720138 92721062 -49550382 - Tigger1 DNA MER2_type 0 2418 1480 2339 90 0 0 chr9 92721062 92721373 -49550071 - AluY SINE Alu 0 311 1 6809 120 24 14 chr9 92721373 92721476 -49549968 - Tigger1 DNA MER2_type -938 1480 1380 254 151 0 0 chr9 92721522 92721575 -49549869 + L1P LINE L1 5172 5224 -922 6291 193 33 7 chr9 92721582 92723726 -49547718 + L1PA15 LINE L1 4021 6164 -1 8998 127 14 14 chr9 92723731 92725111 -49546333 - Tigger1 DNA MER2_type -1011 1407 28 246 195 0 0 chr9 92725855 92725896 -49545548 + Charlie5 DNA MER1_type 2584 2624 0 329 347 125 23 chr9 92727174 92727350 -49544094 - MIR SINE MIR -21 241 48 1566 150 98 46 chr9 92727389 92727715 -49543729 - MER2 DNA MER2_type 0 344 2 183 129 0 0 chr9 92727752 92727783 -49543661 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 492 264 208 9 chr9 92728139 92728355 -49543089 - MIR SINE MIR 0 262 4 439 18 35 0 chr9 92728447 92728504 -49542940 - L1PA7 LINE L1 0 6154 6096 2418 58 14 2 chr9 92728504 92728934 -49542510 + L1P3 LINE L1 5135 5567 -587 988 243 102 9 chr9 92730006 92730272 -49541172 - MLT1A1 LTR MaLR 0 365 60 1808 132 11 0 chr9 92730272 92730552 -49540892 - AluJb SINE Alu 0 312 30 988 243 102 9 chr9 92730552 92730619 -49540825 - MLT1A1 LTR MaLR -305 60 1 207 256 0 0 chr9 92731858 92731897 -49539547 + polypurine Low_complexity Low_complexity 5 43 0 372 253 105 17 chr9 92733801 92734011 -49537433 - L1ME LINE L1 -736 5434 5196 * 474 221 29 44 chr9 92734006 92734210 -49537234 - L1ME LINE L1 -1450 4696 4496 496 329 24 45 chr9 92734233 92734282 -49537162 - L1ME LINE L1 -2118 4028 3979 2478 32 6 16 chr9 92734282 92734596 -49536848 - AluY SINE Alu 0 311 1 496 329 24 45 chr9 92734596 92734965 -49536479 - L1ME LINE L1 -2167 3979 3619 2749 95 0 8 chr9 92734965 92735332 -49536112 + THE1B LTR MaLR 1 364 0 756 174 15 0 chr9 92735334 92735466 -49535978 - MSTD LTR MaLR 0 396 263 496 246 89 1 chr9 92735464 92735609 -49535835 - MSTC LTR MaLR -295 162 1 * 25 31 0 0 chr9 92735893 92735925 -49535519 + AT_rich Low_complexity Low_complexity 1 32 0 504 208 215 7 chr9 92736088 92736242 -49535202 + MER5A DNA MER1_type 4 189 0 4007 176 25 25 chr9 92736277 92736906 -49534538 + MER44D DNA MER2_type 8 511 -1976 1988 67 0 0 chr9 92736906 92737159 -49534285 + AluY SINE Alu 44 296 -15 4007 176 25 25 chr9 92737159 92737255 -49534189 + MER44D DNA MER2_type 510 605 0 838 291 161 69 chr9 92737558 92738342 -49533102 - L1ME LINE L1 -2722 3424 2569 311 257 27 0 chr9 92738496 92738570 -49532874 + MLT1L LTR MaLR 316 391 -224 679 117 9 2 chr9 92739350 92739602 -49531842 + AluSx SINE Alu 1 304 0 286 364 80 12 chr9 92739901 92740063 -49531381 + MIR SINE MIR 70 242 -20 531 211 10 0 chr9 92740294 92740398 -49531046 + Tigger3(Golem) DNA MER2_type 1 105 -2924 5791 116 32 37 chr9 92740406 92741379 -49530065 + Tigger3(Golem) DNA MER2_type 2061 3028 -1 486 257 0 48 chr9 92741379 92741566 -49529878 + (TATG)n Simple_repeat Simple_repeat 2 179 0 2311 84 3 3 chr9 92742294 92742603 -49528841 - AluSc SINE Alu 0 309 1 1584 84 9 9 chr9 92742843 92743070 -49528374 + AluSg/x SINE Alu 71 297 -13 413 309 14 22 chr9 92743085 92743224 -49528220 - MIR SINE MIR -17 245 108 2136 179 103 138 chr9 92743710 92744605 -49526839 + L1MC4a LINE L1 6946 7808 0 512 263 108 40 chr9 92745056 92745428 -49526016 - L1MC4a LINE L1 -1911 5897 5501 1838 153 0 0 chr9 92745520 92745795 -49525649 + AluSx SINE Alu 1 275 -37 209 32 0 32 chr9 92745803 92745834 -49525610 + (GGGAA)n Simple_repeat Simple_repeat 2 31 0 571 199 17 17 chr9 92746039 92746215 -49525229 + GA-rich Low_complexity Low_complexity 1 176 0 228 287 113 41 chr9 92746233 92746428 -49525016 - L1MC4a LINE L1 -1299 4847 4639 21 0 0 0 chr9 92746568 92746589 -49524855 + AT_rich Low_complexity Low_complexity 1 21 0 248 265 36 12 chr9 92746863 92746946 -49524498 - L1P LINE L1 -1886 4260 4176 241 284 112 17 chr9 92746952 92747030 -49524414 + L2 LINE L2 3187 3281 -32 2202 126 33 33 chr9 92747030 92747394 -49524050 + THE1B LTR MaLR 1 364 0 241 284 112 17 chr9 92747394 92747431 -49524013 + L2 LINE L2 3281 3313 0 211 216 0 0 chr9 92747440 92747477 -49523967 + polypurine Low_complexity Low_complexity 3 39 0 2281 38 45 3 chr9 92747508 92747797 -49523647 - AluY SINE Alu -10 301 1 261 356 19 0 chr9 92748055 92748159 -49523285 - MIR SINE MIR -6 256 151 291 252 15 59 chr9 92748312 92748447 -49522997 + MARNA DNA Mariner 276 404 -182 3172 129 18 69 chr9 92748489 92748677 -49522767 + L1MB3 LINE L1 5591 5787 -396 270 0 0 0 chr9 92748677 92748707 -49522737 + (TG)n Simple_repeat Simple_repeat 2 31 0 3172 129 18 69 chr9 92748707 92748848 -49522596 + L1MB3 LINE L1 5787 5934 -249 2147 118 0 0 chr9 92748848 92749153 -49522291 + AluSx SINE Alu 1 305 -7 3172 129 18 69 chr9 92749153 92749444 -49522000 + L1MB3 LINE L1 5934 6180 -3 196 353 0 0 chr9 92749531 92749616 -49521828 + MIR SINE MIR 19 103 -159 198 303 15 15 chr9 92749635 92749701 -49521743 + L2 LINE L2 3177 3242 -30 2204 122 54 23 chr9 92749733 92750086 -49521358 - THE1B LTR MaLR 0 364 1 3989 192 53 16 chr9 92750215 92751571 -49519873 + L1MB7 LINE L1 4730 6137 -47 2296 91 3 0 chr9 92751660 92751958 -49519486 - AluSp SINE Alu -14 299 1 285 29 0 0 chr9 92752442 92752476 -49518968 + (TG)n Simple_repeat Simple_repeat 1 34 0 1837 135 10 36 chr9 92752933 92753237 -49518207 + AluSx SINE Alu 1 296 -16 221 56 0 28 chr9 92753426 92753462 -49517982 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1746 122 17 61 chr9 92753471 92753797 -49517647 + AluSx SINE Alu 1 313 0 294 73 0 0 chr9 92753921 92753962 -49517482 + (CA)n Simple_repeat Simple_repeat 2 42 0 410 200 25 0 chr9 92754184 92754264 -49517180 - MLT2C1 LTR ERVL -39 358 277 896 221 74 134 chr9 92754264 92754564 -49516880 - MER34B LTR ERV1 0 565 317 2256 107 0 0 chr9 92754564 92754874 -49516570 + AluSg SINE Alu 1 310 0 896 221 74 134 chr9 92754874 92755170 -49516274 - MER34B LTR ERV1 -248 317 5 * 1201 219 33 11 chr9 92755152 92755422 -49516022 - MLT2C1 LTR ERVL -94 303 28 204 155 52 52 chr9 92755557 92755615 -49515829 + L2 LINE L2 622 679 -2635 342 67 0 0 chr9 92756248 92756293 -49515151 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 2045 106 17 7 chr9 92756320 92756612 -49514832 + AluSx SINE Alu 3 297 -15 207 309 36 0 chr9 92756957 92757012 -49514432 - L2 LINE L2 -17 3255 3199 872 306 76 25 chr9 92757383 92758093 -49513351 - L1MC4 LINE L1 -15 8027 7268 1130 213 80 52 chr9 92758247 92758748 -49512696 - MER34B LTR ERV1 -2 583 4 1545 95 18 0 chr9 92759406 92759628 -49511816 + AluSg/x SINE Alu 85 310 0 278 273 73 9 chr9 92759650 92759760 -49511684 + MER112 DNA MER1_type 133 249 -11 1878 225 78 20 chr9 92759999 92760487 -49510957 + LTR31 LTR ERV1 69 584 -35 351 113 0 0 chr9 92760953 92761006 -49510438 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 321 54 0 0 chr9 92761037 92761074 -49510370 - tRNA-Tyr-TAC tRNA tRNA -39 37 1 360 0 0 0 chr9 92761169 92761209 -49510235 + (CA)n Simple_repeat Simple_repeat 1 40 0 213 121 0 0 chr9 92761442 92761475 -49509969 + (TC)n Simple_repeat Simple_repeat 1 33 0 209 333 0 0 chr9 92761513 92761567 -49509877 - L2 LINE L2 -215 3057 3004 912 235 54 76 chr9 92762459 92762867 -49508577 + MER34 LTR ERV1 1 399 -143 1786 110 3 50 chr9 92762929 92763228 -49508216 - AluSx SINE Alu -27 285 1 1717 102 3 92 chr9 92763228 92763531 -49507913 - AluSx SINE Alu -36 276 1 466 204 8 26 chr9 92763542 92763663 -49507781 + MER34 LTR ERV1 431 541 -1 480 266 116 84 chr9 92763672 92763808 -49507636 + MLT1H LTR MaLR 118 248 -301 1082 196 56 9 chr9 92763808 92764022 -49507422 + MER58A DNA MER1_type 1 224 0 480 266 116 84 chr9 92764022 92764299 -49507145 + MLT1H LTR MaLR 248 544 -5 1863 188 115 31 chr9 92765585 92766065 -49505379 - MLT2B1 LTR ERVL 0 520 1 1998 158 151 115 chr9 92766283 92766985 -49504459 - LTR8A LTR ERV1 0 727 1 1879 99 52 0 chr9 92767070 92767342 -49504102 - AluSg1 SINE Alu -23 286 1 2535 154 18 18 chr9 92767471 92767905 -49503539 - Tigger2a DNA MER2_type 0 434 1 688 186 87 75 chr9 92768708 92768960 -49502484 - MLT1G LTR MaLR -304 286 32 251 271 62 31 chr9 92768960 92769056 -49502388 + MIR SINE MIR 159 257 -5 324 342 101 0 chr9 92769422 92769580 -49501864 + MER5B DNA MER1_type 5 178 0 363 223 204 0 chr9 92769604 92769737 -49501707 - MER5A DNA MER1_type -21 168 4 580 259 22 0 chr9 92770405 92770540 -49500904 - MER58A DNA MER1_type 0 150 13 271 212 45 15 chr9 92770549 92770615 -49500829 - MER5A DNA MER1_type 0 189 122 581 165 44 57 chr9 92770631 92770658 -49500786 - Charlie5 DNA MER1_type 0 2624 2598 1679 133 3 69 chr9 92770658 92770811 -49500633 + AluJo SINE Alu 1 124 -188 1603 124 4 0 chr9 92770811 92771052 -49500392 + AluSx SINE Alu 54 295 -17 1679 133 3 69 chr9 92771052 92771215 -49500229 + AluJo SINE Alu 124 296 -16 581 165 44 57 chr9 92771215 92771345 -49500099 - Charlie5 DNA MER1_type -26 2598 2469 378 260 0 0 chr9 92771387 92771464 -49499980 - MER5A DNA MER1_type -102 87 11 697 152 0 95 chr9 92772447 92772605 -49498839 + FRAM SINE Alu 9 151 -25 633 204 24 19 chr9 92772605 92772868 -49498576 + GA-rich Low_complexity Low_complexity 1 264 0 445 268 149 67 chr9 92776570 92777072 -49494372 + MLT1G LTR MaLR 3 542 -7 509 234 63 29 chr9 92777844 92778023 -49493421 - MER5A DNA MER1_type 0 189 4 1984 139 0 3 chr9 92778223 92778524 -49492920 - AluJb SINE Alu 0 312 13 1585 195 153 74 chr9 92778547 92778965 -49492479 - MLT1E2 LTR MaLR 0 626 155 1926 103 14 4 chr9 92778965 92779268 -49492176 + AluSx SINE Alu 1 306 0 1585 195 153 74 chr9 92779268 92779377 -49492067 - MLT1E2 LTR MaLR -471 155 56 576 140 0 0 chr9 92779646 92779739 -49491705 + HSAT4 Satellite centromeric 1 93 -12 2352 51 0 10 chr9 92780189 92780484 -49490960 + AluY SINE Alu 1 292 -19 239 211 186 112 chr9 92780554 92780715 -49490729 - L1ME3 LINE L1 -4 6158 5986 2608 224 71 56 chr9 92780745 92781623 -49489821 - L1ME2 LINE L1 -9 6155 5265 2146 99 3 0 chr9 92781706 92782000 -49489444 + AluSg SINE Alu 1 295 -15 1746 191 0 3 chr9 92782654 92782958 -49488486 - AluJo SINE Alu -9 303 1 2009 236 96 12 chr9 92782959 92783637 -49487807 - L1ME2 LINE L1 -850 5296 4562 7849 164 17 4 chr9 92783638 92785611 -49485833 + L1PB4 LINE L1 3792 5791 -365 261 0 0 0 chr9 92785611 92785640 -49485804 + (TA)n Simple_repeat Simple_repeat 2 30 0 243 0 0 0 chr9 92785641 92785668 -49485776 + (CA)n Simple_repeat Simple_repeat 1 27 0 1714 196 34 8 chr9 92785668 92786025 -49485419 + L1PB4 LINE L1 5783 6148 -8 1267 234 92 53 chr9 92786047 92786109 -49485335 - L1ME2 LINE L1 -1597 4549 4491 2077 125 7 0 chr9 92786109 92786414 -49485030 - AluSx SINE Alu -5 307 1 1267 234 92 53 chr9 92786414 92786771 -49484673 - L1ME2 LINE L1 -1655 4491 4100 315 0 0 0 chr9 92786771 92786806 -49484638 + (GA)n Simple_repeat Simple_repeat 2 36 0 1267 234 92 53 chr9 92786806 92786953 -49484491 - L1ME2 LINE L1 -2046 4100 3960 * 2366 240 52 74 chr9 92786952 92788152 -49483292 + L1M4 LINE L1 2509 3682 -2464 1868 120 0 77 chr9 92788523 92788848 -49482596 + AluSx SINE Alu 1 300 -12 26 0 0 0 chr9 92789300 92789326 -49482118 + AT_rich Low_complexity Low_complexity 1 26 0 2134 95 3 10 chr9 92789327 92789632 -49481812 + AluSx SINE Alu 1 303 -9 400 286 282 16 chr9 92789692 92789937 -49481507 + MER5C DNA MER1_type 9 318 -6 1698 197 87 22 chr9 92792325 92792774 -49478670 + MLT1D LTR MaLR 10 390 -19 359 246 32 79 chr9 92793731 92793857 -49477587 + L2 LINE L2 3192 3311 -2 322 330 152 0 chr9 92794123 92794320 -49477124 + L1MC/D LINE L1 5404 5630 -2178 291 353 8 0 chr9 92794514 92794647 -49476797 + (TG)n Simple_repeat Simple_repeat 2 135 0 291 230 142 35 chr9 92794742 92794855 -49476589 - MIR SINE MIR -62 200 76 2213 91 3 3 chr9 92795835 92796133 -49475311 + AluSp SINE Alu 1 298 -15 318 231 154 64 chr9 92796171 92796327 -49475117 + MER5B DNA MER1_type 1 170 -8 470 239 19 89 chr9 92796639 92796875 -49474569 + MLT1H1 LTR MaLR 173 488 -67 2085 99 31 0 chr9 92796875 92797167 -49474277 + AluSx SINE Alu 1 301 -11 470 239 19 89 chr9 92797167 92797219 -49474225 + MLT1H1 LTR MaLR 488 542 -13 2076 110 17 3 chr9 92797669 92797961 -49473483 + AluSg SINE Alu 1 296 -14 238 254 127 24 chr9 92798683 92798809 -49472635 + LTR16A LTR ERVL 139 277 -173 258 356 19 0 chr9 92801918 92802022 -49469422 - MIR SINE MIR -3 259 154 349 278 83 35 chr9 92802457 92802626 -49468818 + L2 LINE L2 2878 3054 -218 382 291 142 39 chr9 92802645 92802994 -49468450 - L1ME LINE L1 -647 5474 5088 319 318 41 41 chr9 92803026 92803109 -49468335 - L1ME LINE L1 -1183 4963 4881 1578 109 0 0 chr9 92803109 92803330 -49468114 - AluSg/x SINE Alu -8 302 82 319 318 41 41 chr9 92803330 92803466 -49467978 - L1ME LINE L1 -1264 4882 4744 302 292 0 0 chr9 92803467 92803539 -49467905 - MER58 DNA MER1_type 0 2420 2349 2375 61 0 0 chr9 92803570 92803865 -49467579 + AluY SINE Alu 1 295 -16 288 254 15 0 chr9 92803867 92803934 -49467510 - MER58 DNA MER1_type -2326 94 27 378 277 104 30 chr9 92804196 92804532 -49466912 - L1ME LINE L1 -1713 4433 4073 1573 145 30 33 chr9 92805783 92805833 -49465611 - L1MA7 LINE L1 0 6291 6242 1839 163 0 0 chr9 92805833 92806127 -49465317 - AluJb SINE Alu -14 298 5 1573 145 30 33 chr9 92806127 92806380 -49465064 - L1MA7 LINE L1 -49 6242 5989 994 293 34 31 chr9 92806482 92806899 -49464545 + L1ME3A LINE L1 5729 6146 -24 1888 97 41 28 chr9 92806937 92807227 -49464217 - AluSx SINE Alu -18 294 1 698 167 0 0 chr9 92807233 92807341 -49464103 - FRAM SINE Alu -22 154 47 450 0 0 0 chr9 92808121 92808171 -49463273 + (CA)n Simple_repeat Simple_repeat 2 51 0 329 263 145 70 chr9 92809210 92809562 -49461882 + HAL1 LINE L1 971 1370 -1137 4115 220 68 6 chr9 92809562 92810540 -49460904 + MER45B DNA AcHobo 1 1039 -1 329 263 145 70 chr9 92810540 92810662 -49460782 + HAL1 LINE L1 1370 1481 -1026 346 243 11 0 chr9 92811209 92811386 -49460058 + (CA)n Simple_repeat Simple_repeat 2 180 0 372 261 5 5 chr9 92811439 92811875 -49459569 + (CA)n Simple_repeat Simple_repeat 1 436 0 1032 114 0 48 chr9 92813342 92813509 -49457935 - AluSg/x SINE Alu -7 305 147 404 214 0 78 chr9 92813797 92813900 -49457544 - MIR SINE MIR -94 168 74 3041 149 35 2 chr9 92814256 92814738 -49456706 - MLT2B1 LTR ERVL -22 498 1 5653 154 65 24 chr9 92814738 92815735 -49455709 - ERVL-B1 LTR ERVL -7 5757 4720 1963 114 3 7 chr9 92815946 92816235 -49455209 + AluSg SINE Alu 23 310 0 326 246 32 79 chr9 92871074 92871200 -49400244 - L2 LINE L2 -2 3311 3192 1390 193 118 25 chr9 92872168 92872567 -49398877 - MLT1D LTR MaLR -23 482 47 541 214 138 92 chr9 92874339 92874602 -49396842 - MLT1E2 LTR MaLR -308 318 38 2759 156 7 0 chr9 92874602 92875025 -49396419 + MSTB LTR MaLR 1 426 0 541 214 138 92 chr9 92875025 92875065 -49396379 - MLT1E2 LTR MaLR -588 38 1 238 241 106 0 chr9 92875131 92875272 -49396172 - HAL1b LINE L1 -542 806 651 406 296 58 32 chr9 92875310 92875499 -49395945 - HAL1b LINE L1 -761 587 394 402 248 60 15 chr9 92876225 92876358 -49395086 + L1M4 LINE L1 3544 3682 -2464 1887 123 0 77 chr9 92876740 92877066 -49394378 + AluSx SINE Alu 12 312 0 26 0 0 0 chr9 92877506 92877532 -49393912 + AT_rich Low_complexity Low_complexity 1 26 0 2160 95 3 10 chr9 92877533 92877838 -49393606 + AluSx SINE Alu 1 303 -9 411 286 282 16 chr9 92877898 92878143 -49393301 + MER5C DNA MER1_type 9 318 -6 273 359 8 0 chr9 92879231 92879362 -49392082 + (TG)n Simple_repeat Simple_repeat 2 133 0 266 263 102 42 chr9 92879457 92879575 -49391869 - MIR SINE MIR -62 200 76 2231 91 3 3 chr9 92880555 92880853 -49390591 + AluSp SINE Alu 1 298 -15 412 235 143 0 chr9 92880928 92881047 -49390397 - MER5B DNA MER1_type -34 144 9 458 239 19 89 chr9 92881359 92881595 -49389849 + MLT1H1 LTR MaLR 173 488 -67 2193 103 31 0 chr9 92881595 92881887 -49389557 + AluSx SINE Alu 1 301 -11 458 239 19 89 chr9 92881887 92881939 -49389505 + MLT1H1 LTR MaLR 488 542 -13 2195 110 17 3 chr9 92882389 92882680 -49388764 + AluSg SINE Alu 1 295 -15 441 36 0 0 chr9 92883079 92883134 -49388310 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1874 124 4 4 chr9 92883134 92883408 -49388036 - AluSx SINE Alu -29 283 10 427 288 78 0 chr9 92884089 92884294 -49387150 + LTR16A LTR ERVL 119 339 -111 722 153 33 27 chr9 92884996 92885146 -49386298 + MLT1D LTR MaLR 355 505 0 249 289 0 37 chr9 92885181 92885316 -49386128 - L1ME4a LINE L1 -189 5932 5803 1005 177 0 0 chr9 92885860 92886018 -49385426 - FRAM SINE Alu -17 159 2 387 0 0 0 chr9 92886774 92886817 -49384627 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr9 92888318 92888340 -49383104 + AT_rich Low_complexity Low_complexity 1 22 0 241 197 30 0 chr9 92890037 92890103 -49381341 + CT-rich Low_complexity Low_complexity 1 68 0 2146 103 3 3 chr9 92890103 92890393 -49381051 - AluSc SINE Alu -19 290 1 250 246 115 62 chr9 92891947 92892077 -49379367 + MLT1K LTR MaLR 169 305 -283 6614 211 61 44 chr9 92894391 92894597 -49376847 + L1MB7 LINE L1 5 206 -6438 2273 119 0 3 chr9 92894597 92894908 -49376536 - AluSq SINE Alu -3 310 1 6614 211 61 44 chr9 92894908 92898051 -49373393 + L1MB7 LINE L1 206 3443 -3201 2164 197 89 35 chr9 92898051 92898568 -49372876 - MER68 LTR ERV1 -15 547 3 7884 196 59 43 chr9 92898569 92899185 -49372259 + L1MB7 LINE L1 3451 4055 -2627 2292 105 0 0 chr9 92899185 92899479 -49371965 - AluSc SINE Alu -15 294 1 7884 196 59 43 chr9 92899479 92900311 -49371133 + L1MB7 LINE L1 4055 4872 -1810 2742 22 0 0 chr9 92900311 92900627 -49370817 + L1PA4 LINE L1 5840 6155 0 7884 196 59 43 chr9 92900627 92900670 -49370774 + L1MB7 LINE L1 4872 4913 -1769 2396 112 0 0 chr9 92900670 92900982 -49370462 + AluSx SINE Alu 1 312 0 7884 196 59 43 chr9 92900982 92902658 -49368786 + L1MB7 LINE L1 4913 6659 -23 220 252 141 22 chr9 92904742 92904877 -49366567 - L3 LINE CR1 -293 1284 1134 226 347 31 0 chr9 92904979 92905077 -49366367 - MIR SINE MIR -67 141 41 239 326 11 0 chr9 92905105 92905200 -49366244 - L3 LINE CR1 -463 1114 1019 2378 57 3 0 chr9 92905252 92905535 -49365909 - AluY SINE Alu -7 304 21 259 212 71 35 chr9 92905895 92905980 -49365464 - L3 LINE CR1 -870 707 620 194 337 22 11 chr9 92906252 92906341 -49365103 - L3 LINE CR1 -1060 517 428 1159 199 63 20 chr9 92910240 92910591 -49360853 - L1M4 LINE L1 -3047 3099 2734 2035 146 26 20 chr9 92910898 92911240 -49360204 + MER2 DNA MER2_type 1 344 0 678 256 18 31 chr9 92911891 92912074 -49359370 + MIR SINE MIR 36 217 -45 216 0 0 0 chr9 92912074 92912098 -49359346 + (CA)n Simple_repeat Simple_repeat 2 25 0 678 256 18 31 chr9 92912098 92912141 -49359303 + MIR SINE MIR 217 259 -3 455 200 11 0 chr9 92914139 92914234 -49357210 - MER5A DNA MER1_type -87 102 7 206 280 103 19 chr9 92915190 92915297 -49356147 - L2 LINE L2 -1 3312 3197 2176 275 92 48 chr9 92917907 92918923 -49352521 + Charlie8 DNA MER1_type 488 1548 -869 3551 171 41 15 chr9 92918929 92919412 -49352032 - L1MB2 LINE L1 -239 5932 5463 1845 178 134 10 chr9 92919412 92919822 -49351622 + LOR1b LTR ERV1 1 461 0 3551 171 41 15 chr9 92919822 92920276 -49351168 - L1MB2 LINE L1 -708 5463 4963 1143 260 77 57 chr9 92920286 92920794 -49350650 + Charlie8 DNA MER1_type 1560 2077 -340 457 153 0 0 chr9 92920843 92920915 -49350529 - FRAM SINE Alu -69 107 36 254 305 25 42 chr9 92921042 92921160 -49350284 + Charlie8 DNA MER1_type 2301 2416 -1 43580 32 23 3 chr9 92921183 92927203 -49344241 - L1PA3 LINE L1 -2 6153 14 826 117 175 53 chr9 92927580 92927734 -49343710 + L1MA7 LINE L1 6060 6247 -44 1515 158 61 27 chr9 92927734 92928031 -49343413 + AluJo SINE Alu 1 307 -5 826 117 175 53 chr9 92928031 92928082 -49343362 + L1MA7 LINE L1 6247 6290 -1 267 237 17 0 chr9 92928389 92928448 -49342996 - MER5A DNA MER1_type -79 110 51 358 271 83 34 chr9 92928765 92929031 -49342413 - L2 LINE L2 -183 3130 2852 2390 149 53 17 chr9 92929162 92929578 -49341866 - MER65A LTR ERV1 0 445 15 225 294 0 0 chr9 92930103 92930154 -49341290 + LTR67 LTR ERVL 484 534 -23 680 321 145 26 chr9 92930265 92931258 -49340186 - L2 LINE L2 -2 3311 2160 597 294 149 6 chr9 92931385 92931701 -49339743 + MLT1L LTR MaLR 243 603 -12 436 300 113 29 chr9 92931714 92931954 -49339490 - L2 LINE L2 -1976 1338 1079 237 283 9 71 chr9 92931960 92932073 -49339371 - MIR SINE MIR 0 262 157 * 330 291 87 37 chr9 92932070 92932311 -49339133 - L2 LINE L2 -2232 1082 830 1019 166 9 113 chr9 92933125 92933451 -49337993 - L1MC5 LINE L1 -908 7053 6762 685 258 74 63 chr9 92933822 92934186 -49337258 - MLT1J LTR MaLR -143 368 1 246 128 0 0 chr9 92935369 92935408 -49336036 + (CA)n Simple_repeat Simple_repeat 2 40 0 830 234 37 0 chr9 92936177 92936365 -49335079 + MER3 DNA MER1_type 15 209 0 438 222 36 11 chr9 92937563 92937693 -49333751 - MLT1F1 LTR MaLR -5 562 451 376 276 100 37 chr9 92938621 92938862 -49332582 - MIR SINE MIR -3 259 2 339 253 30 10 chr9 92941296 92941395 -49330049 - MIR SINE MIR -45 217 117 1513 221 41 13 chr9 92943268 92943918 -49327526 - L1ME LINE L1 -623 5610 4938 978 195 34 10 chr9 92944301 92944506 -49326938 - MER6B DNA MER2_type 0 210 1 2126 136 13 0 chr9 92944646 92944954 -49326490 + AluJb SINE Alu 1 312 0 2181 117 0 7 chr9 92945361 92945659 -49325785 + AluSc SINE Alu 1 296 -13 1183 152 0 5 chr9 92945841 92946038 -49325406 - MER1A DNA MER1_type -199 330 135 1994 137 0 10 chr9 92946778 92947077 -49324367 + AluSc SINE Alu 1 296 -13 2142 99 0 3 chr9 92949019 92949312 -49322132 - AluSc SINE Alu -17 292 1 383 231 111 0 chr9 92949433 92949541 -49321903 - MIR SINE MIR -11 251 132 233 331 166 0 chr9 92951877 92952022 -49319422 + MIR SINE MIR 76 244 -18 27 0 0 0 chr9 92953038 92953065 -49318379 + AT_rich Low_complexity Low_complexity 1 27 0 229 229 0 33 chr9 92954248 92954309 -49317135 - MLT1J LTR MaLR -452 59 1 3567 257 85 23 chr9 92954648 92955274 -49316170 - L1MEc LINE L1 -1301 4914 4328 2027 120 7 32 chr9 92955274 92955582 -49315862 - AluSx SINE Alu -12 300 1 3567 257 85 23 chr9 92955582 92957552 -49313892 - L1MEc LINE L1 -1887 4328 2062 425 248 87 6 chr9 92957559 92957720 -49313724 - MER105 DNA DNA -3 201 28 1103 301 96 43 chr9 92957722 92958922 -49312522 - L1MEc LINE L1 -5038 1212 59 325 139 97 28 chr9 92959616 92959688 -49311756 - MIR SINE MIR -21 241 165 259 275 42 37 chr9 92960697 92960886 -49310558 - HAL1 LINE L1 -77 2430 2241 1064 270 87 73 chr9 92961476 92961682 -49309762 - HAL1 LINE L1 -607 1900 1698 734 178 0 44 chr9 92961682 92961817 -49309627 + FLAM_C SINE Alu 1 129 -4 1064 270 87 73 chr9 92961817 92962418 -49309026 - HAL1 LINE L1 -809 1698 1082 2194 92 0 3 chr9 92963128 92963454 -49307990 + AluSg SINE Alu 1 325 0 200 254 0 119 chr9 92964035 92964102 -49307342 - MIR SINE MIR -120 88 30 259 299 70 59 chr9 92964214 92964401 -49307043 - MIR SINE MIR -4 258 70 2125 112 3 7 chr9 92965481 92965777 -49305667 - AluSx SINE Alu -17 295 1 2321 98 0 0 chr9 92966031 92966326 -49305118 - AluSg SINE Alu -15 295 1 2261 81 13 3 chr9 92968730 92969028 -49302416 - AluSq SINE Alu -12 301 1 552 279 93 25 chr9 92969639 92969843 -49301601 + L2 LINE L2 3076 3293 -20 352 263 85 8 chr9 92970035 92970153 -49301291 - LTR67 LTR ERVL 0 557 431 443 310 9 0 chr9 92971286 92971399 -49300045 - L2 LINE L2 -5 3267 3154 352 325 127 0 chr9 92972135 92972332 -49299112 - MIR SINE MIR -31 231 10 1702 158 63 7 chr9 92973193 92973477 -49297967 + AluSx SINE Alu 1 300 -12 1180 193 0 24 chr9 92973967 92974179 -49297265 + AluJo SINE Alu 19 225 -87 189 74 0 0 chr9 92974632 92974659 -49296785 + (TATG)n Simple_repeat Simple_repeat 2 28 0 449 222 209 0 chr9 92975748 92975901 -49295543 + L1MEc LINE L1 38 222 -6174 420 221 0 36 chr9 92975897 92976037 -49295407 + L1ME1 LINE L1 5841 5975 -191 * 518 139 30 0 chr9 92976078 92976179 -49295265 + L1MA10 LINE L1 6223 6326 -8 692 274 39 59 chr9 92976222 92976432 -49295012 - MIR SINE MIR 0 262 56 2238 157 67 8 chr9 92976432 92976833 -49294611 - MSTB LTR MaLR -1 425 1 692 274 39 59 chr9 92976833 92976877 -49294567 - MIR SINE MIR -206 56 13 251 228 159 55 chr9 92977836 92977981 -49293463 - L1M4 LINE L1 -1122 5024 4865 1207 225 51 39 chr9 92977984 92978415 -49293029 - L1MDa LINE L1 -4799 1741 1306 1981 327 50 18 chr9 92978512 92979554 -49291890 + L2 LINE L2 2227 3303 -10 250 213 3 58 chr9 92979555 92979653 -49291791 - L2 LINE L2 -378 2894 2802 13133 45 3 1 chr9 92979682 92982515 -49288929 + L1PA5 LINE L1 3314 6153 -1 504 275 12 0 chr9 92983076 92983236 -49288208 + MARNA DNA Mariner 282 443 -143 245 335 38 14 chr9 92983562 92983771 -49287673 + L1MC4 LINE L1 7351 7564 -478 255 103 0 0 chr9 92983785 92983824 -49287620 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 975 181 91 63 chr9 92983835 92984122 -49287322 + L1MA8 LINE L1 5994 6288 -3 1433 276 48 4 chr9 92984178 92984675 -49286769 + L1MD3 LINE L1 7467 7985 -10 256 322 94 20 chr9 92984683 92984938 -49286506 + L1MC4 LINE L1 7572 7845 -197 192 40 0 0 chr9 92986019 92986044 -49285400 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1825 188 7 3 chr9 92987179 92987488 -49283956 + AluJo SINE Alu 1 310 -2 1080 217 61 39 chr9 92987965 92988325 -49283119 - MLT1C LTR MaLR -19 448 81 581 89 0 0 chr9 92988912 92988991 -49282453 + AluSc SINE Alu 224 302 -7 2285 106 0 10 chr9 92989318 92989621 -49281823 - AluSx SINE Alu -10 302 3 14180 123 21 21 chr9 92989835 92991312 -49280132 + Tigger1 DNA MER2_type 1 1477 -941 2345 96 0 0 chr9 92991312 92991614 -49279830 + AluSc SINE Alu 1 302 -7 14180 123 21 21 chr9 92991614 92991961 -49279483 + Tigger1 DNA MER2_type 1477 1823 -595 2241 141 0 32 chr9 92991961 92992337 -49279107 + THE1B LTR MaLR 1 364 0 14180 123 21 21 chr9 92992337 92992891 -49278553 + Tigger1 DNA MER2_type 1822 2380 -38 479 198 0 0 chr9 92993909 92993990 -49277454 - FLAM SINE Alu -17 126 46 416 204 199 61 chr9 92994198 92994379 -49277065 + MIR SINE MIR 33 238 -24 971 166 6 12 chr9 92994636 92994799 -49276645 - FRAM SINE Alu -3 163 2 262 193 143 14 chr9 92995225 92995365 -49276079 - L1ME4a LINE L1 -216 5905 5748 2249 92 10 3 chr9 92995981 92996285 -49275159 + AluSx SINE Alu 1 306 -6 328 303 235 20 chr9 92996998 92997708 -49273736 + L2 LINE L2 1834 2774 -540 186 245 102 0 chr9 92997885 92997934 -49273510 + L2 LINE L2 2985 3038 -234 603 168 0 0 chr9 92998303 92998398 -49273046 + MER21B LTR ERV1 2 96 -767 687 191 0 0 chr9 92998467 92998582 -49272862 + FLAM_C SINE Alu 1 115 -28 2193 109 3 16 chr9 92999228 92999364 -49272080 + AluSx SINE Alu 1 137 -175 2176 93 4 0 chr9 92999364 92999665 -49271779 + AluSp SINE Alu 13 314 0 2193 109 3 16 chr9 92999665 92999831 -49271613 + AluSx SINE Alu 137 300 -12 2378 58 10 7 chr9 93000380 93000671 -49270773 - AluY SINE Alu -19 292 1 496 181 0 95 chr9 93001943 93002059 -49269385 + Tigger7 DNA MER2_type 2 106 -444 257 191 22 101 chr9 93002567 93002656 -49268788 + MIR SINE MIR 54 135 -127 477 282 178 9 chr9 93002690 93002903 -49268541 - MIR SINE MIR -5 257 9 249 361 0 0 chr9 93003584 93003656 -49267788 + MER5A DNA MER1_type 10 81 -108 476 304 83 12 chr9 93004119 93004287 -49267157 + MER5A DNA MER1_type 10 189 0 884 213 213 35 chr9 93004426 93004830 -49266614 + L1ME1 LINE L1 5686 6161 -5 970 194 0 0 chr9 93004991 93005161 -49266283 + Tigger7 DNA MER2_type 2 171 -534 1435 159 12 4 chr9 93005172 93005430 -49266014 + Tigger7 DNA MER2_type 2219 2478 -9 1042 152 24 0 chr9 93005790 93005954 -49265490 + FRAM SINE Alu 1 160 -16 2166 103 10 3 chr9 93006368 93006668 -49264776 - AluSq SINE Alu -11 302 1 254 247 35 12 chr9 93006908 93006993 -49264451 + L1 LINE L1 3859 3945 -2201 3035 198 82 31 chr9 93006995 93008033 -49263411 - L1MB7 LINE L1 -9 6175 5086 1294 250 96 11 chr9 93008026 93008682 -49262762 + L1ME3 LINE L1 3928 4639 -1507 * 401 270 36 12 chr9 93008720 93008968 -49262476 + L1ME3 LINE L1 5492 5799 -371 288 240 0 72 chr9 93009039 93009164 -49262280 + L1ME3 LINE L1 5907 6022 -140 250 250 0 24 chr9 93009184 93009268 -49262176 + L1ME3A LINE L1 6084 6165 -5 349 123 31 0 chr9 93009558 93009623 -49261821 + U4 snRNA snRNA 1 67 -78 331 270 117 0 chr9 93010056 93010193 -49261251 - MER20B DNA MER1_type -630 153 1 1899 229 122 40 chr9 93010201 93010454 -49260990 - Charlie2 DNA MER1_type 0 2862 2631 2091 122 7 0 chr9 93010454 93010750 -49260694 + AluSx SINE Alu 1 298 -14 1899 229 122 40 chr9 93010750 93010777 -49260667 - Charlie2 DNA MER1_type -231 2631 2608 3668 146 81 15 chr9 93010777 93011454 -49259990 - MER72 LTR ERV1 0 722 1 1899 229 122 40 chr9 93011454 93012057 -49259387 - Charlie2 DNA MER1_type -254 2608 1905 1673 180 158 32 chr9 93012446 93012908 -49258536 + MLT2B1 LTR ERVL 1 520 0 251 317 19 0 chr9 93012974 93013078 -49258366 - U6 snRNA snRNA -1 106 1 395 234 11 0 chr9 93013083 93013177 -49258267 + L2 LINE L2 1829 1923 -1391 958 294 119 24 chr9 93013256 93014189 -49257255 - L1M4 LINE L1 -2441 3705 2684 753 184 68 14 chr9 93014240 93014447 -49256997 - Looper DNA T2_type 0 1558 1341 227 208 39 0 chr9 93014449 93014526 -49256918 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 2017 133 7 17 chr9 93014584 93014886 -49256558 + AluSx SINE Alu 1 299 -13 213 121 0 0 chr9 93014917 93014950 -49256494 + (A)n Simple_repeat Simple_repeat 1 33 0 1807 186 35 17 chr9 93014950 93015354 -49256090 - Looper DNA T2_type -271 1287 877 343 235 92 31 chr9 93015369 93015467 -49255977 + L2 LINE L2 3210 3313 0 204 296 141 55 chr9 93016411 93016631 -49254813 + L2 LINE L2 1514 1752 -1562 576 229 113 46 chr9 93016633 93016666 -49254778 + L1MC4a LINE L1 5835 5864 -1944 2028 81 0 26 chr9 93016666 93016937 -49254507 - AluSq SINE Alu -21 292 29 576 229 113 46 chr9 93016937 93017248 -49254196 + L1MC4a LINE L1 5864 6202 -1606 439 195 0 0 chr9 93017366 93017448 -49253996 - Tigger5 DNA MER2_type 0 2323 2242 507 120 11 68 chr9 93017450 93017563 -49253881 - Tigger5 DNA MER2_type 0 2323 4 917 176 140 116 chr9 93017563 93017943 -49253501 + L1MC4a LINE L1 6360 6733 -1075 240 361 64 18 chr9 93018054 93018397 -49253047 + L1MEc LINE L1 201 559 -5837 294 229 178 25 chr9 93019090 93019208 -49252236 + MER58C DNA MER1_type 78 213 -2 234 294 131 66 chr9 93019882 93020232 -49251212 - L2 LINE L2 -3 3310 2938 1420 169 222 5 chr9 93020290 93020704 -49250740 - MLT1D LTR MaLR -1 504 1 300 248 186 26 chr9 93020720 93020833 -49250611 - L2 LINE L2 -571 2743 2613 2177 129 55 70 chr9 93021028 93021468 -49249976 + Tigger2a DNA MER2_type 1 433 -1 395 256 141 4 chr9 93021475 93021717 -49249727 + L1M4 LINE L1 3035 3309 -2837 2359 103 0 0 chr9 93021717 93022018 -49249426 + AluSx SINE Alu 1 301 -11 1309 211 10 13 chr9 93022739 93023043 -49248401 + MER58B DNA MER1_type 31 333 -8 653 314 109 51 chr9 93023729 93024410 -49247034 + L1M4 LINE L1 3604 4323 -1823 259 146 0 21 chr9 93024419 93024467 -49246977 + Alu SINE Alu 1 47 -256 2519 53 0 28 chr9 93024574 93024894 -49246550 + AluY SINE Alu 1 311 0 25 65 0 0 chr9 93026723 93026769 -49244675 + AT_rich Low_complexity Low_complexity 1 46 0 2410 80 7 3 chr9 93028980 93029280 -49242164 + AluSc SINE Alu 1 301 -8 2304 92 3 3 chr9 93029718 93030023 -49241421 + AluSq SINE Alu 1 305 -8 368 167 60 0 chr9 93030023 93030107 -49241337 - MER31-int LTR ERV1 -2142 2794 2706 2112 94 10 29 chr9 93030223 93030532 -49240912 + AluSp SINE Alu 1 303 -10 272 233 58 0 chr9 93031149 93031252 -49240192 + Charlie7 DNA MER1_type 30 138 -2474 1660 141 130 0 chr9 93031252 93031522 -49239922 - AluSx SINE Alu -6 306 2 411 215 35 0 chr9 93031598 93031770 -49239674 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 258 156 0 0 chr9 93031775 93031820 -49239624 + T-rich Low_complexity Low_complexity 1 45 0 333 0 0 0 chr9 93032230 93032267 -49239177 + (CA)n Simple_repeat Simple_repeat 1 37 0 877 160 53 27 chr9 93032770 93032920 -49238524 + AluJb SINE Alu 1 154 -158 376 274 8 17 chr9 93033466 93033583 -49237861 + Charlie1a DNA MER1_type 92 207 -1248 540 179 144 17 chr9 93033585 93033758 -49237686 + Charlie1a DNA MER1_type 1260 1454 -1 28 48 0 0 chr9 93034194 93034236 -49237208 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr9 93034419 93034441 -49237003 + AT_rich Low_complexity Low_complexity 1 22 0 305 291 136 31 chr9 93034627 93034833 -49236611 - L1MC/D LINE L1 -792 5552 5338 1786 148 7 20 chr9 93034833 93035137 -49236307 - AluJo SINE Alu -1 311 12 305 291 136 31 chr9 93035137 93035168 -49236276 - L1MC/D LINE L1 -1006 5338 5312 474 290 69 68 chr9 93035278 93035731 -49235713 - L1MC/D LINE L1 -1350 4796 4321 2517 37 7 0 chr9 93035732 93036026 -49235418 - AluY SINE Alu -15 296 1 1148 176 145 54 chr9 93036142 93036590 -49234854 + LTR54B LTR ERV1 8 496 -2 353 154 36 136 chr9 93036642 93036700 -49234744 - MER63 DNA MER1_type 0 1060 1016 1828 151 10 23 chr9 93036700 93037004 -49234440 - AluJb SINE Alu -12 300 1 353 154 36 136 chr9 93037004 93037055 -49234389 - MER63 DNA MER1_type -43 1017 962 184 309 88 15 chr9 93038959 93039027 -49232417 + L2 LINE L2 3172 3244 -28 616 228 199 29 chr9 93039333 93039609 -49231835 - L2 LINE L2 -950 2364 2042 1902 165 14 8 chr9 93039648 93040006 -49231438 - L1PB4 LINE L1 -22 6134 5775 513 198 172 0 chr9 93040006 93040122 -49231322 - L2 LINE L2 -1262 2052 1917 634 120 19 18 chr9 93040123 93040252 -49231192 + MSTA LTR MaLR 1 135 -229 513 198 172 0 chr9 93040878 93040994 -49230450 + L2 LINE L2 1917 2052 -1262 1902 165 14 8 chr9 93040994 93041352 -49230092 + L1PB4 LINE L1 5775 6134 -22 612 233 204 29 chr9 93041391 93041666 -49229778 + L2 LINE L2 2042 2364 -950 184 309 88 15 chr9 93041973 93042041 -49229403 - L2 LINE L2 -28 3244 3172 353 154 36 136 chr9 93043945 93043996 -49227448 + MER63 DNA MER1_type 963 999 -62 1828 151 10 23 chr9 93043996 93044300 -49227144 + AluJb SINE Alu 1 300 -12 353 154 36 136 chr9 93044300 93044358 -49227086 + MER63 DNA MER1_type 999 1061 0 1148 176 145 54 chr9 93044410 93044858 -49226586 - LTR54B LTR ERV1 -2 496 8 2786 22 0 0 chr9 93044974 93045287 -49226157 + AluYb8 SINE Alu 1 313 -5 2116 127 0 3 chr9 93045374 93045674 -49225770 - AluSq SINE Alu -14 299 1 1695 137 78 0 chr9 93045773 93046057 -49225387 + AluJb SINE Alu 1 306 -6 4069 151 25 17 chr9 93046126 93046480 -49224964 + MER72 LTR ERV1 1 351 -371 2223 81 0 48 chr9 93046480 93046789 -49224655 - AluSx SINE Alu -18 294 1 4069 151 25 17 chr9 93046789 93047150 -49224294 + MER72 LTR ERV1 351 722 0 414 281 37 0 chr9 93047517 93047681 -49223763 - L1ME3A LINE L1 -295 5875 5706 459 301 61 67 chr9 93047917 93048263 -49223181 - L1ME3A LINE L1 -515 5649 5326 313 250 21 14 chr9 93048319 93048463 -49222981 - L1ME3A LINE L1 -883 5263 5119 229 302 157 13 chr9 93048553 93049083 -49222361 - L1ME3A LINE L1 -1255 4891 4286 517 287 112 38 chr9 93049182 93049803 -49221641 - L1M4 LINE L1 -1980 4166 3488 487 182 8 58 chr9 93049835 93049956 -49221488 + LTR38B LTR ERV1 1 115 -495 400 237 58 140 chr9 93050063 93050514 -49220930 + LTR38 LTR ERV1 129 542 -14 3433 136 54 44 chr9 93050902 93051606 -49219838 + MER50 LTR ERV1 1 711 -23 385 272 137 51 chr9 93051644 93051816 -49219628 - L1M4 LINE L1 -3153 2993 2837 2883 113 24 0 chr9 93051816 93052240 -49219204 + MER57B LTR ERV1 1 434 0 385 272 137 51 chr9 93052240 93052673 -49218771 - L1M4 LINE L1 -3309 2837 2336 213 139 0 0 chr9 93052930 93052973 -49218471 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1346 211 7 10 chr9 93053213 93053517 -49217927 + MER58B DNA MER1_type 31 333 -8 865 309 91 68 chr9 93054203 93054893 -49216551 + L1ME LINE L1 3604 4332 -1814 2360 99 0 0 chr9 93054893 93055187 -49216257 + AluSc SINE Alu 1 294 -15 865 309 91 68 chr9 93055187 93055630 -49215814 + L1ME LINE L1 4332 4763 -1383 310 314 83 31 chr9 93055751 93055782 -49215662 + L1ME LINE L1 5312 5340 -1004 1807 145 7 20 chr9 93055782 93056086 -49215358 + AluJo SINE Alu 12 311 -1 310 314 83 31 chr9 93056086 93056283 -49215161 + L1ME LINE L1 5340 5552 -792 22 0 0 0 chr9 93056479 93056501 -49214943 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr9 93056682 93056727 -49214717 + AT_rich Low_complexity Low_complexity 1 45 0 540 179 144 17 chr9 93057163 93057336 -49214108 - Charlie1a DNA MER1_type -1 1454 1260 376 274 8 17 chr9 93057338 93057455 -49213989 - Charlie1a DNA MER1_type -1248 207 92 244 229 78 50 chr9 93057870 93058049 -49213395 + L1ME LINE L1 5622 5805 -357 661 246 210 0 chr9 93058622 93058874 -49212570 + L2 LINE L2 1215 1519 -1795 584 299 11 0 chr9 93058881 93059058 -49212386 + LTR28 LTR ERV1 1 179 -841 811 220 37 147 chr9 93059094 93059610 -49211834 + MER52A LTR ERV1 545 1455 -45 502 264 19 0 chr9 93059629 93059784 -49211660 + MER52A LTR ERV1 1598 1755 0 447 256 24 36 chr9 93059793 93059961 -49211483 + L2 LINE L2 1537 1702 -1612 181 300 50 25 chr9 93060929 93061009 -49210435 - MIR SINE MIR 0 262 181 3040 198 26 7 chr9 93061060 93061756 -49209688 - L1 LINE L1 -1871 4275 3567 787 311 34 0 chr9 93062304 93062568 -49208876 + L2 LINE L2 2108 2380 -934 1067 205 46 113 chr9 93062940 93063331 -49208113 + MLT1A1 LTR MaLR 1 365 0 1631 201 77 35 chr9 93063652 93064134 -49207310 + MLT1D LTR MaLR 1 502 -3 25 51 0 0 chr9 93064390 93064429 -49207015 + AT_rich Low_complexity Low_complexity 1 39 0 190 336 65 19 chr9 93065187 93065294 -49206150 - MIR SINE MIR -55 153 42 2038 130 17 0 chr9 93066300 93066593 -49204851 + AluSx SINE Alu 1 298 -14 670 143 4 2 chr9 93067556 93071727 -49199717 + CER Satellite Satellite 1 4179 -19 12724 41 2 1 chr9 93071827 93073472 -49197972 - L1P LINE L1 -1185 4961 3314 243 225 3 58 chr9 93073501 93073599 -49197845 + L2 LINE L2 2802 2894 -378 1011 327 64 22 chr9 93073600 93074336 -49197108 - L2 LINE L2 -10 3303 2536 2640 105 35 94 chr9 93074533 93075160 -49196284 + MER4B LTR ERV1 1 769 -10 2839 231 55 15 chr9 93075161 93076133 -49195311 + L1ME1 LINE L1 3443 4452 -1694 2384 67 0 0 chr9 93076178 93076463 -49194981 + AluY SINE Alu 1 285 -26 1744 197 42 87 chr9 93076677 93077195 -49194249 + MER21B LTR ERV1 41 535 -328 2025 213 124 55 chr9 93077237 93077670 -49193774 - MER21B LTR ERV1 -60 803 296 1587 172 55 21 chr9 93077670 93077847 -49193597 - AluJb SINE Alu -11 301 109 279 0 0 0 chr9 93077847 93077878 -49193566 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1587 172 55 21 chr9 93077878 93077991 -49193453 - AluJb SINE Alu -203 109 1 2025 213 124 55 chr9 93077991 93078299 -49193145 - MER21B LTR ERV1 -567 296 11 2134 237 63 58 chr9 93078306 93078487 -49192957 + L1ME1 LINE L1 4967 5145 -1021 552 66 0 0 chr9 93078487 93078563 -49192881 + L1PA5 LINE L1 6078 6153 -1 2134 237 63 58 chr9 93078563 93079543 -49191901 + L1ME1 LINE L1 5145 6162 -4 263 250 144 10 chr9 93080405 93080509 -49190935 + MIR SINE MIR 134 251 -11 300 317 19 0 chr9 93080537 93080641 -49190803 - L2 LINE L2 -309 2963 2858 219 69 0 0 chr9 93081384 93081413 -49190031 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 675 113 0 21 chr9 93081425 93081522 -49189922 + FRAM SINE Alu 68 162 -14 418 231 66 8 chr9 93082387 93082508 -49188936 - MIR SINE MIR -44 218 91 457 259 69 0 chr9 93082511 93082627 -49188817 - MIR SINE MIR -123 139 16 306 288 34 57 chr9 93082640 93082817 -49188627 + L2 LINE L2 2307 2479 -835 1592 165 8 4 chr9 93082975 93083229 -49188215 - AluSx SINE Alu -57 255 1 330 20 0 0 chr9 93083356 93083405 -49188039 + MER54A LTR ERVL 1 49 -595 2508 175 34 4 chr9 93083405 93083861 -49187583 + MER54A LTR ERVL 225 894 -7 3848 169 74 74 chr9 93083872 93084983 -49186461 + MER52C LTR ERV1 2 1278 0 204 351 67 15 chr9 93085479 93085613 -49185831 + MIR SINE MIR 26 166 -96 1684 152 64 14 chr9 93085622 93085905 -49185539 - AluSx SINE Alu -11 301 5 476 280 115 13 chr9 93086077 93086234 -49185210 - MIR SINE MIR -70 192 20 753 165 23 23 chr9 93086257 93086390 -49185054 - FLAM_C SINE Alu 0 133 1 619 171 0 19 chr9 93086595 93086700 -49184744 + FLAM_C SINE Alu 39 141 -2 719 148 4 8 chr9 93086764 93086885 -49184559 + MSTB1 LTR MaLR 239 432 0 312 304 122 9 chr9 93087233 93087348 -49184096 - MIR SINE MIR -120 142 15 777 230 5 11 chr9 93087630 93087821 -49183623 + L1MB8 LINE L1 5989 6178 0 550 316 56 0 chr9 93087838 93088034 -49183410 + L1MC4 LINE L1 6817 7023 -1019 3854 158 30 9 chr9 93088065 93088744 -49182700 + L1MC3 LINE L1 6418 7110 -675 382 141 70 0 chr9 93088756 93088827 -49182617 - MER67A LTR ERV1 0 543 468 1237 203 13 8 chr9 93089156 93089393 -49182051 - MLT1B LTR MaLR 0 390 153 2174 147 16 50 chr9 93089399 93089838 -49181606 + L1PA16 LINE L1 4895 5347 -819 1874 167 7 13 chr9 93089838 93090144 -49181300 + AluJb SINE Alu 2 305 -7 2174 147 16 50 chr9 93090144 93090259 -49181185 + L1PA16 LINE L1 5347 5464 -702 2084 143 6 40 chr9 93090259 93090608 -49180836 - MER1B DNA MER1_type 0 337 1 2174 147 16 50 chr9 93090608 93090766 -49180678 + L1PA16 LINE L1 5464 5590 -576 1379 67 57 21 chr9 93090770 93090964 -49180480 - AluY SINE Alu -9 302 102 2460 148 32 6 chr9 93090964 93091464 -49179980 + L1PA16 LINE L1 5591 6144 -22 22 0 0 0 chr9 93091464 93091486 -49179958 + AT_rich Low_complexity Low_complexity 1 22 0 651 193 80 7 chr9 93091486 93091636 -49179808 - MLT1B LTR MaLR -229 161 1 271 247 9 71 chr9 93091792 93091906 -49179538 - MIR SINE MIR -97 111 15 845 189 61 0 chr9 93092341 93092489 -49178955 + AluJb SINE Alu 2 158 -154 227 274 42 42 chr9 93092746 93092841 -49178603 - CER Satellite Satellite 0 96 2 932 121 7 7 chr9 93093022 93093162 -49178282 - AluSg/x SINE Alu -76 234 95 1891 152 8 51 chr9 93093163 93093362 -49178082 - MLT1A1 LTR MaLR -24 341 162 1939 164 3 0 chr9 93093362 93093667 -49177777 - AluJb SINE Alu -6 306 1 1891 152 8 51 chr9 93093667 93093823 -49177621 - MLT1A1 LTR MaLR -203 162 1 322 250 34 0 chr9 93093825 93093913 -49177531 + MIR SINE MIR 172 262 0 213 250 0 0 chr9 93094045 93094105 -49177339 + (TA)n Simple_repeat Simple_repeat 1 60 0 2609 68 0 0 chr9 93094216 93094525 -49176919 - AluY SINE Alu -2 309 1 2205 107 0 7 chr9 93095134 93095432 -49176012 - AluSq SINE Alu -17 296 1 282 354 0 0 chr9 93096146 93096228 -49175216 + L2 LINE L2 3165 3246 -26 1170 135 58 43 chr9 93096240 93096331 -49175113 - L1PA15 LINE L1 -7 6158 6070 2318 107 0 7 chr9 93096331 93096639 -49174805 - AluSx SINE Alu -6 306 1 1170 135 58 43 chr9 93096639 93096754 -49174690 - L1PA15 LINE L1 -95 6070 5949 470 198 95 52 chr9 93097210 93097326 -49174118 - MER5B DNA MER1_type -1 177 57 1352 172 96 11 chr9 93097326 93097619 -49173825 - AluJo SINE Alu 0 320 6 461 147 0 0 chr9 93097621 93097689 -49173755 - MER5B DNA MER1_type -110 68 1 2570 105 5 47 chr9 93097689 93098069 -49173375 + THE1B LTR MaLR 1 364 0 915 195 120 105 chr9 93099466 93099587 -49171857 + L1MC4a LINE L1 5795 5913 -1895 1897 125 0 69 chr9 93099587 93099892 -49171552 - AluSx SINE Alu -28 284 1 915 195 120 105 chr9 93099892 93100246 -49171198 + L1MC4a LINE L1 5913 6277 -1531 1536 231 112 53 chr9 93100272 93100544 -49170900 + L1MC4 LINE L1 6821 7076 -966 228 67 0 0 chr9 93100544 93100574 -49170870 + (TGGA)n Simple_repeat Simple_repeat 2 31 0 1536 231 112 53 chr9 93100574 93101049 -49170395 + L1MC4 LINE L1 7076 7612 -430 579 311 89 35 chr9 93101249 93101728 -49169716 - L1MC4a LINE L1 -122 6048 5492 2294 89 0 17 chr9 93101728 93102030 -49169414 + AluY SINE Alu 1 297 -14 579 311 89 35 chr9 93102030 93102274 -49169170 - L1MC4a LINE L1 -678 5492 5263 369 261 14 14 chr9 93102446 93102588 -49168856 - L1MC4a LINE L1 -1082 5064 4923 24 32 0 0 chr9 93103615 93103646 -49167798 + AT_rich Low_complexity Low_complexity 1 31 0 2126 141 0 0 chr9 93103936 93104235 -49167209 + AluSx SINE Alu 1 299 -13 919 142 0 8 chr9 93104247 93104381 -49167063 + FLAM_C SINE Alu 1 133 0 24 53 0 0 chr9 93104470 93104508 -49166936 + AT_rich Low_complexity Low_complexity 1 38 0 1412 169 65 38 chr9 93104705 93104995 -49166449 - AluJo SINE Alu -14 298 1 2221 94 0 3 chr9 93105071 93105357 -49166087 + AluSg SINE Alu 2 286 -24 237 65 0 0 chr9 93105393 93105424 -49166020 + (T)n Simple_repeat Simple_repeat 1 31 0 2703 32 0 0 chr9 93105546 93105856 -49165588 + AluY SINE Alu 1 310 -1 1284 118 20 0 chr9 93106586 93106789 -49164655 + MER44D DNA MER2_type 1 477 -132 900 179 6 40 chr9 93106950 93107123 -49164321 - FAM SINE Alu -2 47 1 26 0 0 0 chr9 93107146 93107172 -49164272 + AT_rich Low_complexity Low_complexity 1 26 0 184 111 44 0 chr9 93107703 93107748 -49163696 + (TG)n Simple_repeat Simple_repeat 2 48 0 207 0 0 0 chr9 93108032 93108055 -49163389 + (T)n Simple_repeat Simple_repeat 1 23 0 1801 231 57 38 chr9 93108277 93108502 -49162942 + L1MD2 LINE L1 5428 5647 -712 2078 137 3 0 chr9 93108502 93108794 -49162650 - AluSq SINE Alu -18 295 3 1801 231 57 38 chr9 93108794 93109092 -49162352 + L1MD2 LINE L1 5647 5961 -398 1298 194 42 31 chr9 93109107 93109396 -49162048 - AluJo SINE Alu -20 292 1 2018 138 0 10 chr9 93109463 93109759 -49161685 - AluSx SINE Alu -11 301 9 1441 181 49 28 chr9 93109773 93110061 -49161383 - AluJo SINE Alu -18 294 1 1908 150 0 11 chr9 93110111 93110420 -49161024 - AluSx SINE Alu 0 306 1 1363 188 51 29 chr9 93110420 93110696 -49160748 - AluJo SINE Alu -4 308 27 2100 107 7 7 chr9 93112587 93112877 -49158567 + AluSx SINE Alu 16 305 -7 315 0 0 0 chr9 93112963 93112998 -49158446 + (CA)n Simple_repeat Simple_repeat 2 36 0 2662 179 4 24 chr9 93113002 93113467 -49157977 - MLT2B2 LTR ERVL -57 458 3 22 35 0 0 chr9 93113840 93113869 -49157575 + AT_rich Low_complexity Low_complexity 1 29 0 2407 148 18 16 chr9 93114124 93114509 -49156935 + MLT1B LTR MaLR 1 386 -4 432 271 34 8 chr9 93114649 93114767 -49156677 - MIR SINE MIR -72 190 70 439 308 129 49 chr9 93114866 93115253 -49156191 - L2 LINE L2 -3 3269 2852 326 232 246 21 chr9 93115382 93115524 -49155920 - MER5A DNA MER1_type -6 183 10 2112 107 0 44 chr9 93116493 93116810 -49154634 + AluSq SINE Alu 1 303 -10 315 223 58 0 chr9 93117361 93117464 -49153980 + Charlie7 DNA MER1_type 30 138 -2474 1646 141 130 0 chr9 93117464 93117734 -49153710 - AluSx SINE Alu -6 306 2 411 215 35 0 chr9 93117810 93117982 -49153462 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 258 156 0 0 chr9 93117987 93118032 -49153412 + T-rich Low_complexity Low_complexity 1 45 0 333 0 0 0 chr9 93118442 93118479 -49152965 + (CA)n Simple_repeat Simple_repeat 1 37 0 864 160 53 27 chr9 93118982 93119132 -49152312 + AluJb SINE Alu 1 154 -158 823 141 0 98 chr9 93119182 93119345 -49152099 + AluJb SINE Alu 145 291 -21 1734 149 14 14 chr9 93120297 93120586 -49150858 - AluJo SINE Alu -13 299 11 2149 130 7 3 chr9 93120622 93120930 -49150514 - AluSx SINE Alu -3 309 1 2007 155 7 0 chr9 93121852 93122162 -49149282 - AluJb SINE Alu 0 312 1 2307 108 0 0 chr9 93122239 93122536 -49148908 - AluSg1 SINE Alu -12 297 1 2183 116 3 0 chr9 93123962 93124256 -49147188 - AluSx SINE Alu -17 295 1 2374 109 0 0 chr9 93124414 93124726 -49146718 - AluSq SINE Alu -1 312 1 222 230 68 27 chr9 93125328 93125402 -49146042 + MIR SINE MIR 77 153 -109 1523 174 0 38 chr9 93126056 93126344 -49145100 - AluJo SINE Alu -35 277 1 622 269 67 93 chr9 93126742 93126832 -49144612 - L3 LINE CR1 -596 981 890 2516 57 0 0 chr9 93126832 93127129 -49144315 + AluY SINE Alu 1 297 -14 622 269 67 93 chr9 93127129 93127424 -49144020 - L3 LINE CR1 -687 890 606 25 65 0 0 chr9 93128611 93128657 -49142787 + AT_rich Low_complexity Low_complexity 1 46 0 194 369 39 39 chr9 93130589 93130692 -49140752 - L2 LINE L2 -2 3270 3168 2422 82 7 3 chr9 93131474 93131777 -49139667 + AluSc SINE Alu 1 304 -5 2541 55 0 26 chr9 93132215 93132525 -49138919 + AluSq SINE Alu 1 302 -11 2165 117 3 7 chr9 93132904 93133204 -49138240 - AluSx SINE Alu -13 299 1 1940 80 3 160 chr9 93133862 93134212 -49137232 - AluSp SINE Alu -18 295 1 219 217 87 0 chr9 93134703 93134749 -49136695 - L2 LINE L2 0 3313 3264 467 235 70 0 chr9 93135020 93135135 -49136309 - MIR SINE MIR -66 142 20 2499 81 3 0 chr9 93135271 93135580 -49135864 - AluSp SINE Alu -3 310 1 254 240 154 0 chr9 93135881 93135985 -49135459 - MIR3 SINE MIR -54 154 35 195 139 0 0 chr9 93137451 93137487 -49133957 + (CA)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr9 93137621 93137647 -49133797 + AT_rich Low_complexity Low_complexity 1 26 0 298 217 72 24 chr9 93139248 93139331 -49132113 + MIR SINE MIR 80 166 -96 201 163 0 102 chr9 93139322 93139371 -49132073 + L2 LINE L2 3210 3253 -19 * 25 0 0 0 chr9 93139879 93139904 -49131540 + AT_rich Low_complexity Low_complexity 1 25 0 351 0 0 0 chr9 93140006 93140045 -49131399 + (CA)n Simple_repeat Simple_repeat 2 40 0 41 66 0 0 chr9 93143200 93143276 -49128168 + GC_rich Low_complexity Low_complexity 1 76 0 206 202 24 24 chr9 93143359 93143443 -49128001 + G-rich Low_complexity Low_complexity 3 86 0 338 256 75 111 chr9 93143615 93143975 -49127469 + L1M2 LINE L1 769 1115 -5734 684 186 9 0 chr9 93145446 93145559 -49125885 - FLAM_A SINE Alu -19 114 1 1743 146 3 24 chr9 93147399 93147729 -49123715 - AluJb SINE Alu 0 324 1 241 341 85 24 chr9 93148971 93149135 -49122309 + MIR3 SINE MIR 5 178 -30 433 256 122 61 chr9 93149613 93149859 -49121585 + MIR SINE MIR 2 262 0 237 152 65 0 chr9 93150067 93150113 -49121331 - L2 LINE L2 0 3272 3224 1713 151 4 0 chr9 93150444 93150703 -49120741 - AluJo SINE Alu -27 285 26 311 263 121 10 chr9 93151046 93151145 -49120299 + MIR SINE MIR 51 160 -102 282 267 117 17 chr9 93152743 93152863 -49118581 + L1M4 LINE L1 4030 4161 -1985 335 285 24 32 chr9 93153047 93153170 -49118274 + MIR SINE MIR 71 192 -70 288 220 101 23 chr9 93153332 93153495 -49117949 + MLT1J LTR MaLR 223 463 -48 188 247 13 78 chr9 93153527 93153604 -49117840 + MIR SINE MIR 189 260 -2 25 0 0 0 chr9 93153616 93153641 -49117803 + AT_rich Low_complexity Low_complexity 1 25 0 262 289 70 22 chr9 93153641 93153914 -49117530 + L1M4 LINE L1 4358 4643 -1503 547 214 0 0 chr9 93153917 93154015 -49117429 + AluJ/FLAM SINE Alu 2 99 -213 368 287 196 27 chr9 93154206 93154537 -49116907 + L1M4 LINE L1 4955 5341 -805 512 101 0 25 chr9 93154560 93154639 -49116805 + L1PB3 LINE L1 6078 6154 0 783 250 93 129 chr9 93155707 93156079 -49115365 - LTR67 LTR ERVL -5 552 206 2270 60 0 4 chr9 93156079 93156405 -49115039 + AluY SINE Alu 1 325 0 783 250 93 129 chr9 93156405 93156603 -49114841 - LTR67 LTR ERVL -351 206 2 2336 141 0 9 chr9 93156657 93156997 -49114447 - MER1B DNA MER1_type 0 337 1 507 115 11 23 chr9 93157008 93157095 -49114349 - L1MB8 LINE L1 0 6178 6093 13533 221 25 28 chr9 93157161 93162158 -49109286 - L1MA9 LINE L1 -30 7701 2719 6773 183 59 22 chr9 93162161 93163438 -49108006 - MER52A LTR ERV1 -10 1745 422 630 177 79 88 chr9 93163442 93163657 -49107787 - MER52A LTR ERV1 -1542 213 1 9209 239 21 18 chr9 93163657 93166261 -49105183 - L1M2c LINE L1 -4528 2640 3 1304 185 36 14 chr9 93166264 93166540 -49104904 - L1MB4 LINE L1 -40 6140 5859 327 146 0 0 chr9 93166541 93166596 -49104848 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 2095 136 3 0 chr9 93166598 93166899 -49104545 - AluSp SINE Alu -11 302 1 3112 205 46 17 chr9 93166900 93167978 -49103466 - L1MB4 LINE L1 -312 5868 4755 1779 164 73 88 chr9 93167979 93168412 -49103032 - MSTB1 LTR MaLR -2 430 6 8468 235 27 10 chr9 93168412 93170637 -49100807 - L1MB4 LINE L1 -1386 4760 2497 215 341 62 52 chr9 93170656 93171134 -49100310 + L2 LINE L2 2577 3058 -214 185 222 93 37 chr9 93171216 93171270 -49100174 + L2 LINE L2 3184 3240 -32 1466 243 61 31 chr9 93171276 93171720 -49099724 + LTR40c LTR ERVL 4 460 -5 4153 113 1 63 chr9 93171760 93172274 -49099170 + MER4B LTR ERV1 1 468 -142 2494 67 0 38 chr9 93172274 93172590 -49098854 + AluSq SINE Alu 1 304 -9 4153 113 1 63 chr9 93172590 93172724 -49098720 + MER4B LTR ERV1 468 609 -1 2324 154 2 65 chr9 93172755 93173171 -49098273 - MLT1B LTR MaLR 0 390 1 2236 109 3 3 chr9 93173733 93174035 -49097409 + AluSx SINE Alu 1 302 -10 2114 114 0 0 chr9 93174331 93174638 -49096806 + AluSx SINE Alu 1 307 0 285 365 19 10 chr9 93174694 93174798 -49096646 - L2 LINE L2 0 3272 3168 1291 203 132 5 chr9 93174887 93175172 -49096272 - L1MC4a LINE L1 -502 7306 6962 231 36 0 0 chr9 93175172 93175200 -49096244 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1291 203 132 5 chr9 93175200 93175284 -49096160 - L1MC4a LINE L1 -846 6962 6890 5966 241 87 39 chr9 93175425 93175544 -49095900 - L1ME1 LINE L1 -5 6161 6049 966 85 78 0 chr9 93175544 93175673 -49095771 - MER85 DNA T2_type 0 139 1 5966 241 87 39 chr9 93175673 93178419 -49093025 - L1ME1 LINE L1 -117 6049 3146 242 167 0 0 chr9 93178542 93178584 -49092860 + AluJo SINE Alu 38 79 -223 1955 189 83 91 chr9 93178585 93179249 -49092195 - MER61E LTR ERV1 0 779 2 1449 138 4 45 chr9 93179249 93179496 -49091948 + AluJo SINE Alu 76 312 0 240 286 143 0 chr9 93179501 93179634 -49091810 + L2 LINE L2 3161 3312 -1 15182 82 4 5 chr9 93180011 93182005 -49089439 - Harlequin LTR ERV1 -1 6895 4903 201 280 93 0 chr9 93183189 93183264 -49088180 + MIR SINE MIR 105 186 -76 335 301 6 12 chr9 93183734 93183897 -49087547 + (TA)n Simple_repeat Simple_repeat 1 162 0 211 401 34 0 chr9 93183919 93184096 -49087348 + MIR SINE MIR 51 233 -29 345 276 29 9 chr9 93184147 93184252 -49087192 - L2 LINE L2 -6 3307 3201 773 166 34 18 chr9 93184500 93184687 -49086757 - MLT1E LTR MaLR 0 654 398 776 213 42 42 chr9 93184733 93184973 -49086471 - MLT1E LTR MaLR -353 240 1 22 56 0 0 chr9 93185583 93185619 -49085825 + AT_rich Low_complexity Low_complexity 1 36 0 2115 123 0 16 chr9 93185633 93185967 -49085477 - AluSx SINE Alu 0 312 1 369 195 67 60 chr9 93186105 93186254 -49085190 + L1M4 LINE L1 4902 5051 -1095 290 295 158 30 chr9 93186542 93186659 -49084785 - LTR16C LTR ERVL -49 442 341 2329 110 0 7 chr9 93186659 93186967 -49084477 - AluSx SINE Alu -6 306 1 290 295 158 30 chr9 93186967 93187083 -49084361 - LTR16C LTR ERVL -150 341 179 22 35 0 0 chr9 93187685 93187714 -49083730 + AT_rich Low_complexity Low_complexity 1 29 0 1002 225 34 75 chr9 93187815 93188197 -49083247 - MLT1C LTR MaLR 0 467 106 7008 230 60 49 chr9 93188551 93192362 -49079082 - L1MCb LINE L1 -1938 4488 538 217 51 51 0 chr9 93192362 93192401 -49079043 + (TG)n Simple_repeat Simple_repeat 1 41 0 7008 230 60 49 chr9 93192401 93192489 -49078955 - L1MCb LINE L1 -5888 538 452 3825 170 40 17 chr9 93192489 93193194 -49078250 + ERVL-D LTR ERVL 5037 5757 -7 1617 193 69 20 chr9 93193194 93193558 -49077886 + MLT2D LTR ERVL 1 480 -40 209 32 0 32 chr9 93193562 93193593 -49077851 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 278 195 0 61 chr9 93193642 93193724 -49077720 + MER4-int LTR ERV1 1114 1190 -5408 552 284 0 6 chr9 93193762 93193931 -49077513 - L1M4 LINE L1 -1749 4397 4230 * 40018 72 10 13 chr9 93193922 93197906 -49073538 - L1PA5 LINE L1 0 6154 2194 1319 27 0 0 chr9 93197906 93198054 -49073390 - L1PA4 LINE L1 -3 6152 6005 40018 72 10 13 chr9 93198054 93200232 -49071212 - L1PA5 LINE L1 -3960 2194 11 2479 226 11 2 chr9 93200243 93200795 -49070649 - L1M4 LINE L1 -1897 4249 3693 971 211 58 27 chr9 93200787 93201048 -49070396 - L1MCb LINE L1 -6147 279 11 * 616 267 7 0 chr9 93201129 93201275 -49070169 - MER58A DNA MER1_type -46 178 32 292 284 130 24 chr9 93201316 93201485 -49069959 + MLT1L LTR MaLR 427 613 -2 198 301 38 53 chr9 93201539 93201672 -49069772 + L2 LINE L2 2153 2283 -1031 240 293 212 0 chr9 93202315 93202414 -49069030 + L2 LINE L2 3194 3313 0 738 318 97 14 chr9 93202433 93202681 -49068763 + L1MC/D LINE L1 3511 3737 -2409 2299 102 0 0 chr9 93202681 93202976 -49068468 + AluSx SINE Alu 1 295 -17 738 318 97 14 chr9 93202976 93203388 -49068056 + L1MC/D LINE L1 3737 4226 -1920 1409 209 178 51 chr9 93203390 93203930 -49067514 - MLT1E2 LTR MaLR -2 624 1 352 298 130 19 chr9 93203932 93204194 -49067250 + L1MC/D LINE L1 4239 4529 -1617 280 150 33 33 chr9 93204222 93204282 -49067162 - L1PA7 LINE L1 -1 6153 6094 * 13725 87 9 24 chr9 93204266 93206507 -49064937 - L1P3 LINE L1 -4223 2238 1 547 104 0 0 chr9 93206535 93206612 -49064832 - Alu SINE Alu -14 296 220 368 263 16 48 chr9 93206813 93206999 -49064445 + L1MC/D LINE L1 4879 5058 -1088 696 314 64 37 chr9 93208186 93208622 -49062822 + L1MC/D LINE L1 5282 5729 -2079 312 27 0 0 chr9 93208823 93208860 -49062584 + (ATG)n Simple_repeat Simple_repeat 2 38 0 2076 122 3 10 chr9 93208898 93209192 -49062252 - AluSq SINE Alu -21 292 1 276 233 165 45 chr9 93210490 93210623 -49060821 + MIR SINE MIR 4 152 -110 357 270 21 103 chr9 93211099 93211332 -49060112 - L2 LINE L2 -66 3247 3034 524 210 242 0 chr9 93211459 93211616 -49059828 - MER3 DNA MER1_type -12 197 3 702 253 80 75 chr9 93212227 93212351 -49059093 + L1MC4 LINE L1 7639 7761 -281 1644 154 66 7 chr9 93212351 93212623 -49058821 + AluJo SINE Alu 1 288 -24 702 253 80 75 chr9 93212623 93212897 -49058547 + L1MC4 LINE L1 7761 8039 -3 445 254 142 15 chr9 93213477 93213703 -49057741 - MLT1K LTR MaLR -3 611 359 234 200 129 35 chr9 93213750 93213835 -49057609 - MLT1K LTR MaLR -317 271 179 746 243 40 18 chr9 93214426 93214648 -49056796 - LTR16C LTR ERVL -12 479 253 325 304 128 7 chr9 93215321 93215469 -49055975 + MIR SINE MIR 37 202 -60 1943 194 69 55 chr9 93216627 93216967 -49054477 - L1MD3 LINE L1 -2 8039 7705 228 35 0 0 chr9 93216967 93216996 -49054448 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2191 78 0 4 chr9 93216998 93217268 -49054176 - AluSx SINE Alu -31 281 13 1943 194 69 55 chr9 93217268 93217454 -49053990 - L1MD3 LINE L1 -336 7705 7518 1160 243 74 20 chr9 93217461 93217811 -49053633 + L1MC4 LINE L1 7143 7511 -531 244 282 0 26 chr9 93218517 93218595 -49052849 + MIR SINE MIR 42 117 -145 198 312 55 46 chr9 93218774 93218883 -49052561 - MIR SINE MIR -112 150 41 243 288 61 0 chr9 93218913 93218979 -49052465 - L2 LINE L2 -2 3311 3242 353 303 90 19 chr9 93219750 93219961 -49051483 - L2 LINE L2 -919 2395 2170 5341 135 22 21 chr9 93220194 93220426 -49051018 - L1MA4A LINE L1 0 6303 6073 3138 71 0 0 chr9 93220426 93220790 -49050654 - THE1B LTR MaLR 0 364 1 5341 135 22 21 chr9 93220790 93221466 -49049978 - L1MA4A LINE L1 -230 6073 5394 180 0 0 0 chr9 93222288 93222308 -49049136 + (A)n Simple_repeat Simple_repeat 1 20 0 221 216 274 0 chr9 93223225 93223327 -49048117 + MER5A DNA MER1_type 35 164 -25 * 336 256 33 0 chr9 93223260 93223350 -49048094 - MER5A DNA MER1_type -83 106 14 1445 42 0 0 chr9 93223993 93224161 -49047283 - AluYa5 SINE Alu 0 311 144 379 262 21 35 chr9 93225271 93225416 -49046028 - MARNA DNA Mariner -48 538 396 * 416 302 8 16 chr9 93225307 93225436 -49046008 + MARNA DNA Mariner 83 210 -376 718 272 49 31 chr9 93225785 93226009 -49045435 + L1MC4 LINE L1 5534 5761 -2047 * 1018 256 90 43 chr9 93226001 93226446 -49044998 + L1MC4 LINE L1 6854 7319 -723 4384 143 96 40 chr9 93226578 93227434 -49044010 - MER49 LTR ERV1 -19 904 1 536 297 176 27 chr9 93227434 93227916 -49043528 + L1MC4 LINE L1 7487 8040 -2 854 267 82 64 chr9 93229408 93229941 -49041503 - MLT1G1 LTR MaLR 0 595 20 1882 151 0 17 chr9 93231005 93231303 -49040141 - AluJo SINE Alu -7 305 13 275 202 8 101 chr9 93231662 93231737 -49039707 + L1MEc LINE L1 1648 1710 -4686 2663 37 0 0 chr9 93231737 93232037 -49039407 - AluY SINE Alu -11 300 1 275 202 8 101 chr9 93232037 93232080 -49039364 + L1MEc LINE L1 1710 1755 -4641 1288 203 5 93 chr9 93232093 93232512 -49038932 + L1M4 LINE L1 3593 3974 -2172 801 144 0 8 chr9 93233164 93233282 -49038162 + AluJb SINE Alu 2 118 -194 216 0 0 0 chr9 93233282 93233306 -49038138 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 765 253 53 27 chr9 93233319 93233544 -49037900 + HsTC2 DNA Tc2 1202 1608 -290 1159 130 6 0 chr9 93233560 93233722 -49037722 + AluJb SINE Alu 150 312 0 555 229 0 93 chr9 93234041 93234224 -49037220 + L1M4 LINE L1 3593 3758 -2388 515 233 240 0 chr9 93235423 93235573 -49035871 - MER5A DNA MER1_type 0 189 4 1628 166 27 33 chr9 93235783 93236084 -49035360 + AluJo SINE Alu 1 299 -13 371 303 53 15 chr9 93236125 93236257 -49035187 - L1MEc LINE L1 -2937 3278 3142 670 286 31 8 chr9 93236313 93236572 -49034872 - L1MEc LINE L1 -3207 3008 2744 1726 265 82 22 chr9 93236624 93237250 -49034194 + HsTC2a DNA Tc2 81 743 -1 347 287 168 41 chr9 93237257 93237626 -49033818 - L1MEc LINE L1 -3499 2716 2301 2163 99 14 3 chr9 93237697 93237990 -49033454 + AluSx SINE Alu 1 296 -16 259 314 38 16 chr9 93238038 93238223 -49033221 - L1MEc LINE L1 -4259 2137 1949 1303 89 95 0 chr9 93238227 93238406 -49033038 - L1PA10 LINE L1 -11 6157 5962 3449 75 0 2 chr9 93238406 93238846 -49032598 + L1PA10 LINE L1 5397 5835 -333 2394 279 80 13 chr9 93238881 93239756 -49031688 + HERV16 LTR ERVL 51 984 -4012 287 169 56 28 chr9 93239759 93239830 -49031614 + LTR16B LTR ERVL 392 464 0 365 227 76 23 chr9 93239832 93239964 -49031480 + LTR16A LTR ERVL 300 438 -12 1848 160 0 36 chr9 93240860 93241167 -49030277 - AluJb SINE Alu -16 296 1 843 217 122 20 chr9 93242393 93242739 -49028705 + MLT1D LTR MaLR 3 446 -59 2262 113 3 3 chr9 93242739 93243049 -49028395 - AluSx SINE Alu -2 310 1 843 217 122 20 chr9 93243049 93243116 -49028328 + MLT1D LTR MaLR 446 505 0 542 270 19 0 chr9 93243293 93243452 -49027992 + L1MD2 LINE L1 6194 6355 -4 228 231 0 0 chr9 93243800 93243852 -49027592 + LTR30 LTR ERV1 1 52 -670 2618 119 53 30 chr9 93243852 93244282 -49027162 + LTR12 LTR ERV1 53 492 -222 476 242 316 28 chr9 93244691 93245046 -49026398 - L2 LINE L2 -1 3312 2856 285 254 48 0 chr9 93245036 93245090 -49026354 - L2 LINE L2 -1734 1580 1524 353 247 0 24 chr9 93245090 93245175 -49026269 - MER5A DNA MER1_type 0 189 107 296 270 40 27 chr9 93245184 93245332 -49026112 + L1M4b LINE L1 31 180 -6679 522 289 34 88 chr9 93245585 93245938 -49025506 + L1M4b LINE L1 845 1178 -5677 794 158 0 27 chr9 93246004 93246187 -49025257 + GA-rich Low_complexity Low_complexity 2 179 0 769 232 73 40 chr9 93246224 93246504 -49024940 + L1M4b LINE L1 1214 1468 -4971 244 114 0 0 chr9 93246538 93246573 -49024871 + L1M4b LINE L1 1781 1815 -5040 308 306 45 19 chr9 93246660 93246817 -49024627 - L1M4 LINE L1 -5662 880 720 3206 250 88 25 chr9 93246845 93248731 -49022713 + L1M4b LINE L1 1983 3960 -2997 394 244 71 24 chr9 93248729 93248897 -49022547 + L1MB8 LINE L1 5904 6079 -99 * 1781 228 45 68 chr9 93248900 93249427 -49022017 - MLT2B1 LTR ERVL 0 520 6 388 229 12 12 chr9 93249427 93249510 -49021934 + L1M4b LINE L1 4892 4974 -1983 391 172 103 0 chr9 93249515 93249602 -49021842 + L1MB8 LINE L1 6078 6173 -5 539 237 108 44 chr9 93249610 93249729 -49021715 + L1M4 LINE L1 3196 3306 -2840 2125 205 82 34 chr9 93249729 93249773 -49021671 + MLT1D LTR MaLR 1 41 -464 2222 94 0 0 chr9 93249773 93250049 -49021395 + AluSx SINE Alu 22 297 -15 2125 205 82 34 chr9 93250049 93250482 -49020962 + MLT1D LTR MaLR 41 501 -4 539 237 108 44 chr9 93250482 93250611 -49020833 + L1M4 LINE L1 3306 3460 -2686 1413 140 47 197 chr9 93250642 93251049 -49020395 + MER39 LTR ERV1 1 497 -210 870 205 35 62 chr9 93251403 93251755 -49019689 + L1MB3 LINE L1 789 1481 -4822 * 6137 215 71 12 chr9 93251746 93253364 -49018080 + L1MB3 LINE L1 3881 5688 -731 788 225 0 0 chr9 93253364 93253493 -49017951 + FLAM_A SINE Alu 1 129 -4 6137 215 71 12 chr9 93253493 93254264 -49017180 + L1MB3 LINE L1 5688 6412 -7 660 296 136 0 chr9 93254280 93254560 -49016884 + L1M4 LINE L1 3495 3812 -2334 476 220 9 9 chr9 93254568 93254677 -49016767 + L1M4 LINE L1 4060 4168 -1978 2102 119 3 13 chr9 93254704 93255006 -49016438 + AluSx SINE Alu 1 299 -13 267 271 47 9 chr9 93255408 93255515 -49015929 + L1MC4 LINE L1 6799 6909 -1133 2054 188 72 26 chr9 93255829 93256087 -49015357 + Charlie1b DNA MER1_type 1 246 -2515 2090 96 26 51 chr9 93256087 93256399 -49015045 - AluSx SINE Alu -8 304 1 2054 188 72 26 chr9 93256399 93256640 -49014804 + Charlie1b DNA MER1_type 246 523 0 1555 187 9 51 chr9 93258033 93258348 -49013096 - AluJb SINE Alu -10 302 1 267 304 29 0 chr9 93258349 93258418 -49013026 + L2 LINE L2 3200 3270 -2 198 237 85 0 chr9 93258899 93258958 -49012486 + MIR SINE MIR 151 214 -48 3225 151 22 16 chr9 93259052 93259597 -49011847 - L1MC2 LINE L1 -11 6333 5786 213 207 69 0 chr9 93259818 93259876 -49011568 - L2 LINE L2 -38 3234 3173 904 288 13 0 chr9 93259939 93260175 -49011269 - MIR SINE MIR -22 240 2 327 258 129 0 chr9 93260670 93260794 -49010650 - MARNA DNA Mariner -375 211 72 231 36 0 0 chr9 93260794 93260822 -49010622 + (T)n Simple_repeat Simple_repeat 1 28 0 354 109 18 0 chr9 93261182 93261237 -49010207 - MLT2B1 LTR ERVL 0 520 465 255 190 35 0 chr9 93261237 93261295 -49010149 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 277 305 55 0 chr9 93263170 93263298 -49008146 + L1ME4a LINE L1 5769 5903 -218 26 19 0 58 chr9 93263310 93263362 -49008082 + AT_rich Low_complexity Low_complexity 1 49 0 1815 240 74 15 chr9 93263425 93263972 -49007472 + MLT1E2 LTR MaLR 88 626 0 8350 208 42 47 chr9 93264374 93267450 -49003994 + L1PBa LINE L1 843 4030 -2832 428 19 38 0 chr9 93267450 93267503 -49003941 + L1PA7 LINE L1 6100 6154 0 8350 208 42 47 chr9 93267503 93268315 -49003129 + L1PBa LINE L1 4030 4845 -2017 2208 118 76 3 chr9 93268308 93268664 -49002780 + L1MA8 LINE L1 5857 6238 -53 * 323 312 83 26 chr9 93268724 93268990 -49002454 - L1M4 LINE L1 -3723 2423 2143 616 335 93 17 chr9 93269295 93269812 -49001632 + L2 LINE L2 2248 2803 -511 389 274 189 24 chr9 93269911 93270159 -49001285 + L2 LINE L2 2927 3215 -98 2173 96 14 0 chr9 93270238 93270552 -49000892 - AluSp SINE Alu 0 318 1 2096 113 3 30 chr9 93270775 93271076 -49000368 + AluSx SINE Alu 1 293 -19 239 325 41 6 chr9 93271102 93271271 -49000173 + L1M4 LINE L1 2432 2606 -3540 244 302 137 29 chr9 93271271 93271410 -49000034 - MER5A DNA MER1_type 0 189 36 304 310 30 0 chr9 93272224 93272324 -48999120 - L1MC4 LINE L1 -1 8041 7939 189 0 0 0 chr9 93272401 93272422 -48999022 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 963 106 8 0 chr9 93272422 93272554 -48998890 - AluSg/x SINE Alu -32 278 146 1599 154 0 0 chr9 93272570 93272803 -48998641 - AluSx SINE Alu -79 233 1 1471 237 139 15 chr9 93272903 93273384 -48998060 + L1MCb LINE L1 1 541 -5504 14767 152 33 30 chr9 93273535 93276087 -48995357 - ERVL-D LTR ERVL -743 5021 2461 4289 219 41 20 chr9 93276079 93277033 -48994411 - ERVL-D LTR ERVL -3991 1773 800 * 2288 242 109 10 chr9 93277049 93277672 -48993772 - ERVL-D LTR ERVL -5076 688 4 266 151 0 57 chr9 93277678 93277731 -48993713 - MLT2D LTR ERVL -7 513 464 2608 147 20 2 chr9 93277744 93278151 -48993293 + MSTB1 LTR MaLR 1 414 -18 1404 223 98 13 chr9 93278169 93278487 -48992957 - MER2 DNA MER2_type 0 345 1 329 43 21 0 chr9 93278500 93278547 -48992897 + (CA)n Simple_repeat Simple_repeat 1 48 0 1684 205 18 12 chr9 93278571 93278862 -48992582 - MLT2D LTR ERVL -69 345 50 2811 208 57 86 chr9 93278862 93279368 -48992076 - MER44D DNA MER2_type -1882 605 255 2071 93 47 0 chr9 93279368 93279646 -48991798 + AluSx SINE Alu 1 291 -21 2811 208 57 86 chr9 93279646 93279894 -48991550 - MER44D DNA MER2_type -2232 255 1 1684 205 18 12 chr9 93279894 93279938 -48991506 - MLT2D LTR ERVL -364 50 8 5192 185 41 55 chr9 93279952 93280197 -48991247 + L1MC2 LINE L1 4408 4655 -1689 2237 119 0 13 chr9 93280197 93280500 -48990944 + AluSx SINE Alu 1 299 -13 5192 185 41 55 chr9 93280500 93281220 -48990224 + L1MC2 LINE L1 4655 5384 -960 1814 156 7 17 chr9 93281220 93281522 -48989922 + AluSx SINE Alu 1 299 -13 5192 185 41 55 chr9 93281522 93282490 -48988954 + L1MC2 LINE L1 5384 6336 -8 815 340 91 3 chr9 93282586 93282939 -48988505 + LTR16C LTR ERVL 108 491 0 2119 141 7 0 chr9 93283012 93283367 -48988077 - AluSx SINE Alu 0 357 1 22 0 0 0 chr9 93283421 93283443 -48988001 + AT_rich Low_complexity Low_complexity 1 22 0 209 131 16 82 chr9 93283737 93283798 -48987646 + T-rich Low_complexity Low_complexity 3 59 0 5758 193 41 26 chr9 93284755 93286897 -48984547 - L1MB8 LINE L1 -1 6177 4009 1093 198 65 0 chr9 93286977 93287194 -48984250 + MER63B DNA MER1_type 3 233 -203 349 215 182 16 chr9 93287201 93287322 -48984122 - L1MB8 LINE L1 -2162 3984 3844 2178 125 0 7 chr9 93287461 93287765 -48983679 + AluSx SINE Alu 1 302 -10 1278 231 48 12 chr9 93287919 93288252 -48983192 - MER63B DNA MER1_type -89 347 3 1941 144 0 0 chr9 93288289 93288720 -48982724 + AluSx SINE Alu 5 435 0 21 36 0 0 chr9 93289483 93289511 -48981933 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 93289728 93289752 -48981692 + AT_rich Low_complexity Low_complexity 1 24 0 1447 181 100 4 chr9 93289760 93290041 -48981403 + AluJo SINE Alu 5 312 0 777 157 0 18 chr9 93290045 93290211 -48981233 + GA-rich Low_complexity Low_complexity 2 164 0 265 360 59 13 chr9 93290411 93290647 -48980797 + L1MEd LINE L1 317 563 -5556 323 291 89 24 chr9 93290790 93291003 -48980441 + L1M4 LINE L1 5106 5332 -814 279 302 23 12 chr9 93291156 93291242 -48980202 + MLT1L LTR MaLR 203 289 -326 480 235 0 0 chr9 93291388 93291503 -48979941 + L1M4 LINE L1 3812 3926 -2220 3886 184 68 48 chr9 93291561 93291941 -48979503 - MER21B LTR ERV1 0 863 492 1956 124 32 0 chr9 93291941 93292223 -48979221 + AluSq SINE Alu 1 291 -22 3886 184 68 48 chr9 93292223 93292678 -48978766 - MER21B LTR ERV1 -371 492 11 597 158 0 0 chr9 93292685 93292780 -48978664 - AluJ/FLAM SINE Alu -213 99 5 953 232 14 25 chr9 93292786 93293062 -48978382 - L1M4 LINE L1 -2266 3880 3608 833 264 62 39 chr9 93293253 93293353 -48978091 - L1M4 LINE L1 -2538 3608 3512 2459 100 0 0 chr9 93293353 93293664 -48977780 - AluSq SINE Alu -2 311 1 833 264 62 39 chr9 93293664 93294081 -48977363 - L1M4 LINE L1 -2634 3512 3079 1836 205 79 114 chr9 93294228 93295015 -48976429 - LTR1B LTR ERV1 -60 960 1 997 224 60 12 chr9 93295716 93296051 -48975393 - L1M4 LINE L1 -3058 3088 2738 563 198 20 0 chr9 93296069 93296170 -48975274 + MLT1D LTR MaLR 21 123 -382 956 225 4 54 chr9 93296182 93296422 -48975022 + MLT1D LTR MaLR 278 505 0 1758 229 44 30 chr9 93296423 93296468 -48974976 - L1M4 LINE L1 -3399 2747 2704 2010 142 17 62 chr9 93296468 93296821 -48974623 - MER1B DNA MER1_type 0 337 1 1758 229 44 30 chr9 93296821 93297300 -48974144 - L1M4 LINE L1 -3442 2704 2216 267 91 0 0 chr9 93297301 93297334 -48974110 - MER1B DNA MER1_type -77 262 230 1211 273 55 3 chr9 93297817 93298143 -48973301 - MLT1J LTR MaLR -168 343 1 218 376 32 18 chr9 93299143 93299364 -48972080 - L2 LINE L2 -107 3206 2983 187 295 80 40 chr9 93299585 93299785 -48971659 - L2 LINE L2 -556 2758 2551 2378 104 27 30 chr9 93299821 93300186 -48971258 + THE1B LTR MaLR 1 364 0 2078 131 3 19 chr9 93300240 93300552 -48970892 + AluJb SINE Alu 1 307 -5 183 114 0 0 chr9 93300813 93300848 -48970596 + (TG)n Simple_repeat Simple_repeat 2 36 0 282 349 0 0 chr9 93300860 93300923 -48970521 - Zaphod DNA AcHobo -3967 64 2 1496 195 108 21 chr9 93301015 93301427 -48970017 + MER31B LTR ERV1 1 648 -13 710 212 0 0 chr9 93301469 93301606 -48969838 - FLAM_A SINE Alu 0 142 6 2307 81 7 7 chr9 93301794 93302089 -48969355 - AluSp SINE Alu -17 296 2 1577 180 22 85 chr9 93302652 93303052 -48968392 + MLT1B LTR MaLR 16 390 0 1741 171 9 32 chr9 93303074 93303390 -48968054 - AluJo SINE Alu -3 309 1 582 213 9 8 chr9 93304100 93304302 -48967142 + MER57A LTR ERV1 135 403 0 519 91 40 6 chr9 93304473 93304567 -48966877 + MLT1B LTR MaLR 117 189 -201 1542 161 17 17 chr9 93305386 93305678 -48965766 + L1MC1 LINE L1 6042 6333 0 338 293 88 22 chr9 93305688 93305961 -48965483 - L1M4 LINE L1 -2995 3151 2861 485 124 34 11 chr9 93306129 93306218 -48965226 + FRAM SINE Alu 21 111 -65 450 329 9 4 chr9 93306331 93306562 -48964882 - L1M4 LINE L1 -3622 2524 2293 252 293 93 73 chr9 93306564 93306714 -48964730 + MIR3 SINE MIR 43 195 -13 2300 104 7 0 chr9 93308120 93308418 -48963026 - AluSc SINE Alu -9 300 1 448 187 55 0 chr9 93309061 93309152 -48962292 + MLT1E1 LTR MaLR 559 654 0 24 0 0 0 chr9 93309488 93309512 -48961932 + AT_rich Low_complexity Low_complexity 1 24 0 950 160 18 5 chr9 93309552 93309988 -48961456 + (TGGA)n Simple_repeat Simple_repeat 1 442 0 258 261 209 46 chr9 93311147 93311300 -48960144 - MIR SINE MIR -54 208 31 404 292 96 11 chr9 93311502 93311680 -48959764 + MIR SINE MIR 66 258 -4 1879 174 10 10 chr9 93311956 93312129 -48959315 - AluJo SINE Alu -1 311 139 522 0 0 0 chr9 93312129 93312187 -48959257 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2184 106 0 0 chr9 93312187 93312470 -48958974 - AluSx SINE Alu -29 283 1 1879 174 10 10 chr9 93312470 93312606 -48958838 - AluJo SINE Alu -171 141 1 214 314 93 73 chr9 93313426 93313630 -48957814 + MIR SINE MIR 55 262 0 207 204 0 0 chr9 93313631 93313675 -48957769 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2273 108 0 0 chr9 93314369 93314656 -48956788 + AluSx SINE Alu 1 287 -25 232 102 41 0 chr9 93314656 93314705 -48956739 + (TA)n Simple_repeat Simple_repeat 1 51 0 35 0 0 0 chr9 93314816 93314851 -48956593 + AT_rich Low_complexity Low_complexity 1 35 0 390 203 34 17 chr9 93315076 93315253 -48956191 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 628 217 18 13 chr9 93315264 93315415 -48956029 - MLT2D LTR ERVL -19 445 240 1656 140 44 0 chr9 93317200 93317450 -48953994 - AluJb SINE Alu -9 303 43 251 283 48 28 chr9 93317481 93317626 -48953818 + MER5A DNA MER1_type 5 152 -37 335 200 0 12 chr9 93318085 93318165 -48953279 + CT-rich Low_complexity Low_complexity 2 80 0 1104 128 0 0 chr9 93318167 93318346 -48953098 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 728 45 0 0 chr9 93318544 93318632 -48952812 + AluSg/x SINE Alu 181 268 -44 317 269 27 100 chr9 93318657 93318966 -48952478 + L1P5 LINE L1 5178 5462 -694 2453 205 16 31 chr9 93319005 93319517 -48951927 + MLT2B3 LTR ERVL 8 513 -41 537 16 0 0 chr9 93319517 93319579 -48951865 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2453 205 16 31 chr9 93319579 93319621 -48951823 + MLT2B3 LTR ERVL 513 554 0 2326 99 0 13 chr9 93319679 93319992 -48951452 + AluSg SINE Alu 1 309 -1 6791 134 43 32 chr9 93320342 93320805 -48950639 - Tigger3b DNA MER2_type -1798 1230 773 2181 112 3 3 chr9 93320805 93321092 -48950352 + AluSx SINE Alu 1 287 -25 6791 134 43 32 chr9 93321092 93321558 -48949886 - Tigger3b DNA MER2_type -2255 773 282 2454 67 0 10 chr9 93321558 93321855 -48949589 + AluY SINE Alu 1 294 -17 6791 134 43 32 chr9 93321855 93322141 -48949303 - Tigger3b DNA MER2_type -2746 282 1 826 238 19 54 chr9 93322282 93322543 -48948901 - L1ME1 LINE L1 -6 6160 5909 2119 124 0 13 chr9 93323239 93323537 -48947907 - AluSx SINE Alu -18 294 1 1834 103 14 21 chr9 93323792 93324074 -48947370 + Tigger3b DNA MER2_type 247 526 -705 354 211 37 99 chr9 93324075 93324236 -48947208 - L1ME3A LINE L1 -290 5874 5724 233 298 77 29 chr9 93324240 93324344 -48947100 - L2 LINE L2 -2 3311 3203 2616 182 20 6 chr9 93324344 93324854 -48946590 - MER89 LTR ERV1 0 559 43 26 0 0 0 chr9 93324855 93324881 -48946563 + AT_rich Low_complexity Low_complexity 1 26 0 844 158 55 7 chr9 93324885 93325031 -48946413 - FAM SINE Alu -32 153 1 313 157 0 0 chr9 93325031 93325082 -48946362 - MER89 LTR ERV1 -500 59 9 1961 120 78 31 chr9 93325110 93325468 -48945976 + THE1C LTR MaLR 1 375 0 180 0 0 0 chr9 93325545 93325565 -48945879 + (A)n Simple_repeat Simple_repeat 1 20 0 270 276 60 9 chr9 93325635 93325751 -48945693 - L2 LINE L2 -249 3064 2943 322 305 43 24 chr9 93325802 93325975 -48945469 - L1ME3A LINE L1 -512 5658 5483 2278 116 3 0 chr9 93326197 93326508 -48944936 + AluSx SINE Alu 1 312 0 505 230 24 6 chr9 93326687 93326797 -48944647 + MLT1B LTR MaLR 281 389 -1 666 309 195 8 chr9 93326913 93327405 -48944039 + L2 LINE L2 1750 2333 -981 377 256 97 0 chr9 93327985 93328133 -48943311 - MLT1G1 LTR MaLR 0 595 390 413 101 72 0 chr9 93328282 93328351 -48943093 - L1PA11 LINE L1 0 6174 6101 3387 120 23 0 chr9 93328390 93328864 -48942580 + MER1A DNA MER1_type 45 529 0 461 248 122 42 chr9 93328892 93329106 -48942338 - L1ME2 LINE L1 -47 6117 5887 807 31 30 62 chr9 93329123 93329609 -48941835 + (TG)n Simple_repeat Simple_repeat 1 470 0 982 198 110 0 chr9 93329897 93330124 -48941320 - L1ME2 LINE L1 -343 5823 5572 2329 87 7 3 chr9 93330808 93331117 -48940327 - AluSg SINE Alu 0 310 1 21 71 0 0 chr9 93331194 93331236 -48940208 + AT_rich Low_complexity Low_complexity 1 42 0 1030 177 41 79 chr9 93332173 93332534 -48938910 + MER39 LTR ERV1 34 492 -215 241 210 210 0 chr9 93332622 93332722 -48938722 + L1M4 LINE L1 3360 3480 -2666 3720 155 56 136 chr9 93332735 93332947 -48938497 + MER21A LTR ERV1 1 228 -703 1732 36 0 0 chr9 93332947 93333143 -48938301 - AluY SINE Alu -11 300 105 3720 155 56 136 chr9 93333143 93333932 -48937512 + MER21A LTR ERV1 228 922 -9 2250 102 3 0 chr9 93333964 93334259 -48937185 + AluSx SINE Alu 1 296 -16 185 275 0 0 chr9 93334415 93334455 -48936989 - MIR SINE MIR -86 122 83 3474 150 44 55 chr9 93334836 93335334 -48936110 - L1MA9 LINE L1 0 6312 5810 1823 171 3 7 chr9 93335334 93335633 -48935811 - AluJb SINE Alu -10 302 5 3474 150 44 55 chr9 93335633 93335646 -48935798 - L1MA9 LINE L1 -502 5810 5798 2541 74 0 0 chr9 93335646 93335955 -48935489 - AluY SINE Alu -2 309 1 3474 150 44 55 chr9 93335955 93336147 -48935297 - L1MA9 LINE L1 -514 5798 5616 7275 169 54 16 chr9 93336247 93337662 -48933782 - L1MA9 LINE L1 -886 5260 3784 2191 125 0 0 chr9 93337662 93337959 -48933485 - AluSg1 SINE Alu -12 297 1 7275 169 54 16 chr9 93337959 93338013 -48933431 - L1MA9 LINE L1 -2362 3784 3734 939 162 0 0 chr9 93338234 93338471 -48932973 + CT-rich Low_complexity Low_complexity 1 237 0 998 142 0 0 chr9 93338776 93338924 -48932520 - AluSx SINE Alu -1 311 164 1102 146 0 0 chr9 93339017 93339175 -48932269 - AluSx SINE Alu -154 158 1 337 303 99 6 chr9 93339175 93339337 -48932107 - L1MC4a LINE L1 -340 5824 5709 1694 167 89 40 chr9 93339337 93339611 -48931833 + MER7A DNA MER2_type 1 293 -2745 2188 90 28 0 chr9 93339611 93339899 -48931545 + AluSc SINE Alu 1 296 -13 1694 167 89 40 chr9 93339899 93339948 -48931496 + MER7A DNA MER2_type 293 338 -8 340 284 122 31 chr9 93340121 93340359 -48931085 - L1MC4a LINE L1 -639 5527 5257 454 285 90 86 chr9 93340402 93340726 -48930718 - L1MC4a LINE L1 -1907 4239 3918 2007 143 6 13 chr9 93340726 93341040 -48930404 - AluSx SINE Alu 0 312 1 454 285 90 86 chr9 93341040 93341401 -48930043 - L1MC4a LINE L1 -2228 3918 3560 2465 67 0 0 chr9 93341401 93341699 -48929745 + AluY SINE Alu 1 298 -13 454 285 90 86 chr9 93341699 93342332 -48929112 - L1MC4a LINE L1 -2586 3560 2915 2522 101 17 9 chr9 93342344 93342692 -48928752 - L1PA11 LINE L1 -4 6170 5820 382 181 0 48 chr9 93342803 93342886 -48928558 - MER58B DNA MER1_type -5 336 258 536 308 43 9 chr9 93343766 93343977 -48927467 + MIR SINE MIR 24 241 -21 1161 164 0 33 chr9 93343987 93344201 -48927243 - L1MC1 LINE L1 0 6333 6127 1561 192 69 23 chr9 93344336 93344685 -48926759 + MLT1A1 LTR MaLR 1 365 0 224 326 12 23 chr9 93344691 93344777 -48926667 + MIR3 SINE MIR 7 91 -117 201 39 0 0 chr9 93344858 93344884 -48926560 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2126 65 3 65 chr9 93344890 93345182 -48926262 - AluY SINE Alu -37 274 1 2498 72 0 7 chr9 93345715 93346022 -48925422 + AluY SINE Alu 1 305 -6 344 231 50 50 chr9 93346383 93346400 -48925044 - MIR SINE MIR -94 168 152 2236 100 0 0 chr9 93346400 93346711 -48924733 - AluSg SINE Alu 0 311 1 344 231 50 50 chr9 93346711 93346813 -48924631 - MIR SINE MIR -109 153 48 499 249 39 39 chr9 93346900 93347081 -48924363 - MER3 DNA MER1_type -22 187 7 628 169 7 7 chr9 93348023 93348159 -48923285 + CT-rich Low_complexity Low_complexity 4 139 0 1897 177 6 3 chr9 93348176 93348205 -48923239 - AluJb SINE Alu 0 312 285 402 21 0 0 chr9 93348205 93348252 -48923192 + (CTTG)n Simple_repeat Simple_repeat 2 48 0 1897 177 6 3 chr9 93348252 93348533 -48922911 - AluJb SINE Alu -27 285 1 5804 149 46 18 chr9 93348536 93349557 -48921887 - L1MC1 LINE L1 -11 6322 5273 210 71 0 0 chr9 93349557 93349585 -48921859 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr9 93349596 93349617 -48921827 + AT_rich Low_complexity Low_complexity 1 21 0 366 23 0 0 chr9 93349628 93349671 -48921773 + (TA)n Simple_repeat Simple_repeat 1 43 0 911 148 28 0 chr9 93349698 93349840 -48921604 - L1PA16 LINE L1 0 6166 6021 1408 235 67 113 chr9 93350002 93350760 -48920684 - MER21B LTR ERV1 -124 739 17 359 261 160 38 chr9 93352480 93352718 -48918726 - L2 LINE L2 -1 3312 3046 414 268 45 56 chr9 93352904 93353083 -48918361 - L2 LINE L2 -461 2853 2677 936 287 84 59 chr9 93353382 93353670 -48917774 + L1MEd LINE L1 565 844 -1646 2300 99 0 0 chr9 93353670 93353963 -48917481 + AluSx SINE Alu 1 293 -19 936 287 84 59 chr9 93353963 93354631 -48916813 + L1MEd LINE L1 844 1625 -865 224 59 29 0 chr9 93354934 93354968 -48916476 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2018 95 0 0 chr9 93354984 93355237 -48916207 - AluSx SINE Alu -59 253 1 652 279 60 12 chr9 93355606 93355939 -48915505 + L1MEd LINE L1 2206 2554 -3575 1802 157 14 3 chr9 93356034 93356320 -48915124 + AluJb SINE Alu 1 289 -23 399 272 0 0 chr9 93356346 93356482 -48914962 + (TA)n Simple_repeat Simple_repeat 1 136 0 499 244 18 78 chr9 93356584 93356801 -48914643 - MER112 DNA MER1_type -55 205 2 260 232 40 40 chr9 93356910 93357009 -48914435 + L1ME LINE L1 5794 5892 -278 329 192 13 13 chr9 93357184 93357262 -48914182 + MER116 DNA Mariner 3 80 0 24 0 0 0 chr9 93357740 93357764 -48913680 + AT_rich Low_complexity Low_complexity 1 24 0 11056 52 7 3 chr9 93359045 93361119 -48910325 + L1PA5 LINE L1 4077 6154 0 201 147 0 0 chr9 93361144 93361178 -48910266 + (A)n Simple_repeat Simple_repeat 1 34 0 2135 139 0 0 chr9 93361254 93361555 -48909889 - AluSx SINE Alu -11 301 1 183 146 0 0 chr9 93361600 93361641 -48909803 + (A)n Simple_repeat Simple_repeat 1 41 0 3315 235 113 22 chr9 93361684 93361764 -48909680 + L1MC4 LINE L1 6738 6809 -1233 2298 101 3 0 chr9 93361764 93362062 -48909382 + AluSx SINE Alu 1 299 -13 3315 235 113 22 chr9 93362062 93363049 -48908395 + L1MC4 LINE L1 6809 7902 -140 359 290 55 35 chr9 93363348 93363493 -48907951 - MIR SINE MIR -87 175 28 222 333 0 0 chr9 93364178 93364241 -48907203 + L2 LINE L2 3210 3272 0 21 36 0 0 chr9 93364405 93364433 -48907011 + AT_rich Low_complexity Low_complexity 1 28 0 7197 85 21 27 chr9 93364581 93365456 -48905988 - L1MA1 LINE L1 -4 6298 5429 2220 125 0 0 chr9 93365456 93365767 -48905677 - AluSx SINE Alu -1 311 1 7197 85 21 27 chr9 93365767 93365959 -48905485 - L1MA1 LINE L1 -873 5429 5237 21 36 0 0 chr9 93365976 93366004 -48905440 + AT_rich Low_complexity Low_complexity 1 28 0 2739 163 74 33 chr9 93366303 93366639 -48904805 - MER68 LTR ERV1 0 562 194 2010 144 3 0 chr9 93366639 93366930 -48904514 + AluSx SINE Alu 1 292 -20 2739 163 74 33 chr9 93366930 93367132 -48904312 - MER68 LTR ERV1 -368 194 2 294 221 0 26 chr9 93367342 93367419 -48904025 + L1MEc LINE L1 42 116 -6280 1208 163 106 0 chr9 93367419 93367646 -48903798 + Tigger1 DNA MER2_type 1 251 -2167 527 295 116 29 chr9 93367646 93368094 -48903350 + L1MEc LINE L1 1229 1715 -4681 * 1125 198 23 64 chr9 93368089 93368433 -48903011 + L1M4 LINE L1 3829 4158 -1988 2220 131 0 6 chr9 93368445 93368937 -48902507 + AluSg SINE Alu 1 310 0 4058 187 65 37 chr9 93368979 93369724 -48901720 - L1MB8 LINE L1 -1 6177 5382 207 0 0 0 chr9 93369724 93369747 -48901697 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4058 187 65 37 chr9 93369747 93370166 -48901278 - L1MB8 LINE L1 -796 5382 4977 1401 209 65 6 chr9 93370167 93370260 -48901184 - L1MB8 LINE L1 -1361 4785 4699 225 94 0 0 chr9 93370260 93370292 -48901152 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1401 209 65 6 chr9 93370292 93370523 -48900921 - L1MB8 LINE L1 -1447 4699 4442 1247 205 8 121 chr9 93370532 93370637 -48900807 + MLT1A2 LTR MaLR 4 119 -255 2295 89 10 0 chr9 93370637 93370929 -48900515 + AluSg SINE Alu 1 295 -15 1247 205 8 121 chr9 93370929 93371204 -48900240 + MLT1A2 LTR MaLR 119 341 -33 7990 221 61 5 chr9 93371256 93373343 -48898101 - L1MB8 LINE L1 -1712 4434 2231 406 118 0 0 chr9 93373343 93373421 -48898023 + AluS SINE Alu 229 306 0 594 279 58 46 chr9 93373422 93373902 -48897542 - L1M4b LINE L1 -4044 3094 2609 9677 35 3 5 chr9 93373908 93374981 -48896463 + MER11C LTR ERVK 1 1071 0 226 198 330 0 chr9 93375176 93375267 -48896177 - FLAM_C SINE Alu -5 128 8 4316 268 68 16 chr9 93375274 93377200 -48894244 - L1M4b LINE L1 -4543 2416 394 240 172 230 23 chr9 93377231 93377318 -48894126 + L1MA10 LINE L1 6176 6280 -54 200 322 17 0 chr9 93377518 93377577 -48893867 + L2 LINE L2 3210 3269 -3 402 250 69 7 chr9 93378066 93378210 -48893234 - MIR SINE MIR -36 226 74 2042 135 16 10 chr9 93378480 93378784 -48892660 + AluSx SINE Alu 2 307 -5 698 213 41 9 chr9 93379338 93379510 -48891934 + L1ME2 LINE L1 5996 6334 0 482 181 36 14 chr9 93379511 93379649 -48891795 + GA-rich Low_complexity Low_complexity 2 142 0 444 312 51 17 chr9 93379707 93379941 -48891503 + ERVL LTR ERVL 4881 5122 -642 1128 80 11 6 chr9 93381339 93381514 -48889930 + (GAA)n Simple_repeat Simple_repeat 3 178 0 659 133 0 8 chr9 93381514 93381634 -48889810 + (GGA)n Simple_repeat Simple_repeat 2 120 0 392 240 67 0 chr9 93382490 93382594 -48888850 + LTR50 LTR ERVL 1 111 -684 420 37 0 0 chr9 93382746 93382800 -48888644 + (CA)n Simple_repeat Simple_repeat 2 55 0 852 211 48 5 chr9 93382866 93383075 -48888369 + LTR50 LTR ERVL 489 706 -89 1053 313 147 15 chr9 93383548 93384012 -48887432 - MLT1H1 LTR MaLR -30 525 1 1745 149 59 31 chr9 93384224 93384415 -48887029 + MLT1B LTR MaLR 1 206 -184 1054 188 86 137 chr9 93384415 93384809 -48886635 - MLT1A2 LTR MaLR 0 374 1 1745 149 59 31 chr9 93384809 93384940 -48886504 + MLT1B LTR MaLR 206 332 -58 2249 273 34 7 chr9 93385036 93385652 -48885792 + L1MC4 LINE L1 6457 7089 -953 2549 208 53 33 chr9 93385663 93386306 -48885138 + L1MC4 LINE L1 7259 7914 -128 1017 228 82 4 chr9 93386405 93386673 -48884771 - LTR50 LTR ERVL -1 794 506 701 250 132 19 chr9 93386727 93387189 -48884255 - MLT1G LTR MaLR -5 585 5 216 150 51 0 chr9 93387900 93387955 -48883489 - MIR SINE MIR -87 121 64 431 227 176 0 chr9 93388685 93388804 -48882640 - MER5A DNA MER1_type -43 146 7 246 227 0 0 chr9 93389453 93389528 -48881916 + (TG)n Simple_repeat Simple_repeat 1 75 0 189 0 0 0 chr9 93391459 93391480 -48879964 + (T)n Simple_repeat Simple_repeat 1 21 0 552 272 24 18 chr9 93391943 93392112 -48879332 - MIR SINE MIR -60 202 33 855 312 36 27 chr9 93392445 93392858 -48878586 + L1MDa LINE L1 2 418 -6122 2173 103 7 10 chr9 93393312 93393622 -48877822 - AluSc SINE Alu 0 309 1 2380 207 49 36 chr9 93393762 93394027 -48877417 + L1MDa LINE L1 932 1192 -5348 2131 67 44 0 chr9 93394027 93394348 -48877096 - AluY SINE Alu 0 333 1 2380 207 49 36 chr9 93394348 93394952 -48876492 + L1MDa LINE L1 1192 1802 -4738 * 5103 207 8 14 chr9 93394949 93395310 -48876134 + L1MA9 LINE L1 3596 3958 -2188 2329 92 3 0 chr9 93395310 93395605 -48875839 + AluSg SINE Alu 1 296 -14 5103 207 8 14 chr9 93395605 93396321 -48875123 + L1MA9 LINE L1 3958 4667 -1479 4022 160 33 4 chr9 93396321 93397037 -48874407 + L1MA9 LINE L1 5559 6299 -13 958 209 99 83 chr9 93397049 93397390 -48874054 + L1MDa LINE L1 1703 2058 -4482 2250 117 7 0 chr9 93397390 93397699 -48873745 + AluSp SINE Alu 3 313 0 958 209 99 83 chr9 93397699 93397925 -48873519 + L1MDa LINE L1 2058 2279 -4261 3057 251 45 2 chr9 93397945 93398829 -48872615 + L1MDa LINE L1 2658 3579 -2961 921 193 41 67 chr9 93398814 93399018 -48872426 + L1MDa LINE L1 4297 4505 -2035 * 3246 75 57 9 chr9 93399018 93399393 -48872051 + MLT2A1 LTR ERVL 1 357 -87 195 42 0 0 chr9 93399393 93399417 -48872027 + (TC)n Simple_repeat Simple_repeat 2 25 0 423 0 0 0 chr9 93399417 93399464 -48871980 + (CA)n Simple_repeat Simple_repeat 2 48 0 3246 75 57 9 chr9 93399464 93399511 -48871933 + MLT2A1 LTR ERVL 356 444 0 921 193 41 67 chr9 93399511 93399575 -48871869 + L1MDa LINE L1 4505 4558 -1982 1974 131 24 20 chr9 93399575 93399873 -48871571 + AluSq SINE Alu 1 299 -14 367 102 0 0 chr9 93399875 93399924 -48871520 + MSTA LTR MaLR 380 428 0 2137 191 11 3 chr9 93399926 93400308 -48871136 - MER77 LTR ERV1 -218 387 3 667 173 100 57 chr9 93400366 93400583 -48870861 + L1MD3 LINE L1 7557 7995 0 2059 117 13 17 chr9 93400897 93401196 -48870248 + AluSx SINE Alu 1 298 -14 494 326 88 40 chr9 93401198 93401597 -48869847 - L2 LINE L2 -355 2959 2542 2370 97 0 0 chr9 93402505 93402850 -48868594 - AluY SINE Alu 0 345 1 2050 118 3 7 chr9 93404607 93404895 -48866549 + AluSq SINE Alu 1 287 -26 26 82 0 0 chr9 93406537 93406598 -48864846 + AT_rich Low_complexity Low_complexity 1 61 0 1119 193 68 0 chr9 93406650 93406857 -48864587 - MER58A DNA MER1_type -3 221 1 25 31 0 0 chr9 93406857 93406889 -48864555 + AT_rich Low_complexity Low_complexity 1 32 0 384 22 0 0 chr9 93407584 93407629 -48863815 + (TG)n Simple_repeat Simple_repeat 2 46 0 798 164 0 0 chr9 93407733 93407861 -48863583 + L1PB3 LINE L1 6025 6152 -2 24 0 0 0 chr9 93407879 93407903 -48863541 + AT_rich Low_complexity Low_complexity 1 24 0 288 324 187 32 chr9 93407924 93408208 -48863236 + L3 LINE CR1 708 1035 -542 267 312 79 63 chr9 93408529 93408782 -48862662 + L3 LINE CR1 1037 1293 -284 203 256 186 12 chr9 93408937 93409023 -48862421 + MIR3 SINE MIR 5 105 -103 207 316 22 65 chr9 93409550 93409689 -48861755 + MIR SINE MIR 89 221 -41 180 283 120 22 chr9 93409822 93409914 -48861530 - MIR SINE MIR -142 120 20 2520 77 0 6 chr9 93410639 93410952 -48860492 - AluY SINE Alu 0 311 1 2110 110 0 10 chr9 93411503 93411794 -48859650 - AluSq SINE Alu -17 296 9 2243 99 0 7 chr9 93411862 93412154 -48859290 - AluSg1 SINE Alu -19 290 1 279 0 0 0 chr9 93412331 93412362 -48859082 + (TG)n Simple_repeat Simple_repeat 2 32 0 509 289 131 29 chr9 93412494 93413027 -48858417 - L1ME LINE L1 -328 5842 5264 2900 180 118 119 chr9 93413516 93414332 -48857112 - L1MD2 LINE L1 -29 6724 5915 2371 88 3 0 chr9 93414332 93414629 -48856815 + AluSg SINE Alu 6 303 -7 2900 180 118 119 chr9 93414629 93415032 -48856412 - L1MD2 LINE L1 -838 5915 5513 189 0 0 0 chr9 93415038 93415059 -48856385 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6865 70 20 0 chr9 93415061 93416030 -48855414 - L1PA8 LINE L1 -23 6464 5478 17623 123 7 14 chr9 93416030 93418849 -48852595 - L1PA8 LINE L1 -2073 4388 1591 7323 240 47 22 chr9 93418855 93419003 -48852441 - L1MD2 LINE L1 -1032 5508 5365 530 29 0 14 chr9 93419003 93419072 -48852372 + (CTATT)n Simple_repeat Simple_repeat 5 72 0 7323 240 47 22 chr9 93419072 93420300 -48851144 - L1MD2 LINE L1 -1175 5365 4169 189 0 0 0 chr9 93420300 93420321 -48851123 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7323 240 47 22 chr9 93420321 93420957 -48850487 - L1MD2 LINE L1 -2371 4169 3433 2310 108 0 0 chr9 93420957 93421263 -48850181 - AluSg SINE Alu -4 306 1 7323 240 47 22 chr9 93421263 93421458 -48849986 - L1MD2 LINE L1 -3107 3433 3244 2318 256 118 8 chr9 93421520 93422145 -48849299 - L1MD2 LINE L1 -5831 709 16 2089 174 13 26 chr9 93423662 93424047 -48847397 + MLT1B LTR MaLR 1 380 -10 226 274 85 28 chr9 93424812 93424918 -48846526 + L2 LINE L2 3165 3276 -37 2407 84 3 10 chr9 93425222 93425531 -48845913 - AluSc SINE Alu -2 307 1 203 345 76 8 chr9 93425908 93426027 -48845417 - MIR SINE MIR -131 131 5 245 279 58 10 chr9 93426222 93426326 -48845118 - L3 LINE CR1 -726 851 743 649 171 8 8 chr9 93427226 93427343 -48844101 - MSTD LTR MaLR -279 117 1 200 230 11 92 chr9 93427414 93427501 -48843943 + MIR SINE MIR 35 114 -94 762 230 152 61 chr9 93427569 93427906 -48843538 + L2 LINE L2 2456 2836 -478 2168 121 0 10 chr9 93427906 93428212 -48843232 - AluSg SINE Alu -7 303 1 762 230 152 61 chr9 93428212 93428270 -48843174 + L2 LINE L2 2836 2887 -427 1652 170 11 7 chr9 93628860 93629143 -48642301 + AluSq SINE Alu 1 284 -29 266 273 144 7 chr9 93629393 93629532 -48641912 - MIR SINE MIR -77 185 28 432 93 40 13 chr9 93630461 93630536 -48640908 - Alu SINE Alu -233 78 2 795 211 142 41 chr9 93630541 93630732 -48640712 - MLT1E2 LTR MaLR -163 463 293 2214 134 0 0 chr9 93630732 93631038 -48640406 + AluSx SINE Alu 1 306 -6 795 211 142 41 chr9 93631038 93631163 -48640281 - MLT1E2 LTR MaLR -333 293 115 230 184 41 0 chr9 93631238 93631287 -48640157 - MLT1E2 LTR MaLR -596 58 8 610 266 33 11 chr9 93631303 93631487 -48639957 + MIR SINE MIR 40 227 -35 272 139 0 0 chr9 93631532 93631575 -48639869 + (T)n Simple_repeat Simple_repeat 1 43 0 2234 168 24 0 chr9 93631778 93632158 -48639286 - MLT1B LTR MaLR -1 389 1 189 139 0 0 chr9 93632703 93632746 -48638698 + (CA)n Simple_repeat Simple_repeat 1 43 0 250 191 43 0 chr9 93634226 93634273 -48637171 + C-rich Low_complexity Low_complexity 5 53 0 2056 149 190 48 chr9 93634419 93634903 -48636541 + MLT2B3 LTR ERVL 2 554 0 1950 114 0 8 chr9 93635480 93635768 -48635676 - AluSx SINE Alu 0 305 20 1114 219 112 6 chr9 93637450 93637816 -48633628 + L1MB2 LINE L1 5760 6164 -7 187 295 141 0 chr9 93638310 93638388 -48633056 + MIR SINE MIR 71 159 -103 209 314 14 0 chr9 93640581 93640651 -48630793 + GA-rich Low_complexity Low_complexity 4 74 0 388 246 144 0 chr9 93640816 93640934 -48630510 - MIR SINE MIR -44 218 84 292 71 57 14 chr9 93642023 93642093 -48629351 + (CA)n Simple_repeat Simple_repeat 1 73 0 617 205 25 17 chr9 93642153 93642518 -48628926 + (CA)n Simple_repeat Simple_repeat 1 368 0 2055 42 132 0 chr9 93643379 93643644 -48627800 - AluY SINE Alu -1 300 1 188 241 54 116 chr9 93643848 93643960 -48627484 - L2 LINE L2 -41 3272 3168 188 346 31 39 chr9 93643995 93644122 -48627322 - L2 LINE L2 -176 3096 2971 326 249 145 34 chr9 93645253 93645611 -48625833 - HAL1 LINE L1 -879 1628 1231 909 179 31 5 chr9 93645861 93646057 -48625387 + MLT1B LTR MaLR 188 388 -2 935 222 102 9 chr9 93646070 93646286 -48625158 + MER46A DNA MER2_type 1 236 0 1161 181 0 14 chr9 93646529 93646739 -48624705 - MER3 DNA MER1_type -2 207 1 1291 138 108 0 chr9 93648051 93648282 -48623162 + L1MC1 LINE L1 6074 6329 -4 2238 97 7 3 chr9 93648282 93648580 -48622864 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr9 93651002 93651030 -48620414 + AT_rich Low_complexity Low_complexity 1 28 0 1498 73 0 0 chr9 93651030 93651209 -48620235 + AluY SINE Alu 115 293 -18 888 211 48 45 chr9 93653384 93653673 -48617771 + MER74A LTR ERVL 1 290 -268 1392 101 68 18 chr9 93653903 93654122 -48617322 + MER30 DNA MER1_type 1 230 0 1009 198 0 0 chr9 93655992 93656169 -48615275 + AluJb SINE Alu 136 312 0 254 280 115 62 chr9 93657912 93658312 -48613132 + L2 LINE L2 2368 2788 -526 326 353 130 0 chr9 93658605 93658789 -48612655 + L1MC/D LINE L1 5586 5793 -2015 742 98 32 49 chr9 93659199 93659322 -48612122 - AluSg/x SINE Alu -3 307 187 22 35 0 0 chr9 93659434 93659463 -48611981 + AT_rich Low_complexity Low_complexity 1 29 0 2097 132 14 0 chr9 93659463 93659758 -48611686 + AluSx SINE Alu 1 299 -13 1920 162 30 0 chr9 93660782 93661078 -48610366 + AluJb SINE Alu 1 305 -7 393 246 131 11 chr9 93661874 93662057 -48609387 + MER20 DNA MER1_type 1 205 -14 203 325 79 18 chr9 93662225 93662339 -48609105 + MIR SINE MIR 29 149 -113 2403 103 0 3 chr9 93662731 93663043 -48608401 + AluSx SINE Alu 1 311 -1 895 198 105 43 chr9 93663818 93663998 -48607446 + MER34 LTR ERV1 269 471 -71 2233 107 3 0 chr9 93663998 93664298 -48607146 - AluSc SINE Alu -8 301 1 895 198 105 43 chr9 93664298 93664375 -48607069 + MER34 LTR ERV1 471 542 0 2510 71 0 10 chr9 93664735 93665043 -48606401 - AluY SINE Alu -6 305 1 1291 194 40 11 chr9 93665513 93665791 -48605653 + L1MB3 LINE L1 5294 5579 -601 502 153 30 19 chr9 93665800 93665917 -48605527 + L1MB3 LINE L1 5718 5836 -332 650 139 9 9 chr9 93666022 93666137 -48605307 + L1MB3 LINE L1 6044 6158 -25 334 266 60 40 chr9 93666315 93666514 -48604930 - LTR16B LTR ERVL 0 464 262 1293 122 0 22 chr9 93666516 93666697 -48604747 - AluSg/x SINE Alu -17 295 119 433 164 0 0 chr9 93666697 93666758 -48604686 - AluJ/FLAM SINE Alu -251 61 1 2269 82 6 41 chr9 93667083 93667402 -48604042 + AluSc SINE Alu 1 308 -1 624 213 44 25 chr9 93667406 93667566 -48603878 + MLT1E3 LTR MaLR 458 620 -4 321 313 227 30 chr9 93667572 93667872 -48603572 + L1ME LINE L1 3693 4051 -2095 386 275 70 59 chr9 93670502 93670552 -48600892 + L1ME LINE L1 5467 5515 -647 2511 87 0 0 chr9 93670552 93670862 -48600582 + AluSg SINE Alu 1 310 0 386 275 70 59 chr9 93670862 93671138 -48600306 + L1ME LINE L1 5515 5790 -372 4227 238 61 35 chr9 93671929 93672130 -48599314 + L1M4 LINE L1 2146 2340 -3806 6116 135 107 11 chr9 93672130 93672308 -48599136 + Tigger3b DNA MER2_type 1 160 -2868 2264 91 0 32 chr9 93672308 93672617 -48598827 + AluSc SINE Alu 1 299 -10 6116 135 107 11 chr9 93672617 93673558 -48597886 + Tigger3b DNA MER2_type 160 1228 -3 4227 238 61 35 chr9 93673558 93674389 -48597055 + L1M4 LINE L1 2340 3148 -2998 2537 65 3 3 chr9 93674389 93674695 -48596749 - AluY SINE Alu -5 306 1 4227 238 61 35 chr9 93674695 93674980 -48596464 + L1M4 LINE L1 3148 3424 -2722 191 86 0 29 chr9 93674980 93675015 -48596429 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4227 238 61 35 chr9 93675015 93675265 -48596179 + L1M4 LINE L1 3424 3756 -2390 457 287 93 46 chr9 93675316 93675553 -48595891 + L1M4 LINE L1 4785 5032 -1114 1942 122 4 4 chr9 93675601 93675872 -48595572 + AluSg SINE Alu 33 303 -7 1976 85 7 25 chr9 93676069 93676352 -48595092 - AluSp SINE Alu -23 290 13 423 38 0 0 chr9 93676485 93676538 -48594906 + (CA)n Simple_repeat Simple_repeat 2 54 0 1801 173 0 23 chr9 93676847 93677154 -48594290 - AluJo SINE Alu -8 304 5 2139 113 10 26 chr9 93677765 93678076 -48593368 - AluSx SINE Alu -6 306 1 611 304 125 57 chr9 93678410 93678603 -48592841 + L1ME4a LINE L1 4007 4185 -1961 2002 150 3 0 chr9 93678603 93678903 -48592541 - AluSx SINE Alu -11 301 1 611 304 125 57 chr9 93678903 93679470 -48591974 + L1ME4a LINE L1 4185 4819 -1327 367 331 45 6 chr9 93679727 93679884 -48591560 + L1ME4a LINE L1 5615 5777 -344 534 156 0 0 chr9 93679906 93679996 -48591448 - AluSp/q SINE Alu -13 300 211 362 326 96 42 chr9 93680177 93680438 -48591006 + L1ME4a LINE L1 5845 6119 -2 2395 80 0 0 chr9 93680521 93680832 -48590612 - AluY SINE Alu 0 311 1 4404 147 65 70 chr9 93680836 93681750 -48589694 + MER21A LTR ERV1 17 925 -6 1850 124 40 27 chr9 93682836 93683135 -48588309 + AluSx SINE Alu 5 307 -5 233 211 268 0 chr9 93683324 93683395 -48588049 - MIR SINE MIR -72 190 101 1664 183 67 6 chr9 93684077 93684422 -48587022 + L1MB3 LINE L1 5818 6183 0 1144 111 0 39 chr9 93685319 93685499 -48585945 - AluSg/x SINE Alu -2 308 136 235 118 82 18 chr9 93686206 93686316 -48585128 + (CA)n Simple_repeat Simple_repeat 1 117 0 227 139 79 18 chr9 93686342 93686507 -48584937 + (CA)n Simple_repeat Simple_repeat 1 175 0 317 114 78 18 chr9 93686520 93686687 -48584757 + (CA)n Simple_repeat Simple_repeat 2 178 0 341 122 66 19 chr9 93686741 93686964 -48584480 + (CA)n Simple_repeat Simple_repeat 1 233 0 473 83 9 3 chr9 93689433 93689663 -48581781 + AluY SINE Alu 1 310 0 21 36 0 0 chr9 93689757 93689785 -48581659 + AT_rich Low_complexity Low_complexity 1 28 0 2186 111 0 0 chr9 93690249 93690546 -48580898 - AluSx SINE Alu -15 297 1 262 312 49 58 chr9 93690547 93690752 -48580692 + L1ME3A LINE L1 5760 5962 -208 289 222 22 0 chr9 93693316 93693406 -48578038 + (TG)n Simple_repeat Simple_repeat 2 93 0 450 242 10 12 chr9 93693445 93693943 -48577501 + (TG)n Simple_repeat Simple_repeat 1 497 0 1755 168 58 34 chr9 93694585 93694748 -48576696 + MLT1B LTR MaLR 1 159 -231 2173 103 3 3 chr9 93694748 93695048 -48576396 + AluSx SINE Alu 1 300 -12 1755 168 58 34 chr9 93695048 93695265 -48576179 + MLT1B LTR MaLR 159 390 0 1022 262 132 85 chr9 93696118 93697265 -48574179 + L1MC4 LINE L1 6696 7896 -146 1045 123 37 0 chr9 93697268 93697430 -48574014 - AluSg/x SINE Alu -16 296 129 585 111 0 0 chr9 93697433 93697514 -48573930 - AluY SINE Alu -236 82 2 210 323 118 31 chr9 93698027 93698243 -48573201 - MIR SINE MIR -31 231 4 184 182 23 45 chr9 93698266 93698310 -48573134 + MER5A DNA MER1_type 9 51 -138 224 323 62 15 chr9 93700008 93700138 -48571306 + MIR SINE MIR 39 174 -88 194 188 0 0 chr9 93700525 93700557 -48570887 + MER5C DNA MER1_type 291 322 -2 824 188 28 17 chr9 93700632 93700813 -48570631 - L1MB3 LINE L1 0 6183 6001 365 264 0 38 chr9 93702190 93702296 -48569148 - MIR SINE MIR -5 257 156 23 54 0 0 chr9 93702439 93702476 -48568968 + AT_rich Low_complexity Low_complexity 1 37 0 1628 137 50 18 chr9 93703127 93703405 -48568039 - AluJb SINE Alu -25 287 1 2207 103 3 6 chr9 93703604 93703915 -48567529 - AluSg SINE Alu 0 310 1 231 288 51 42 chr9 93703969 93704087 -48567357 + L1ME LINE L1 5490 5608 -513 774 204 0 0 chr9 93704187 93704368 -48567076 + L1 LINE L1 5096 5276 -870 2096 115 0 0 chr9 93704424 93704719 -48566725 - AluSx SINE Alu -17 295 1 1395 159 159 17 chr9 93704973 93705275 -48566169 - MER7A DNA MER2_type -1 345 3 2128 243 81 38 chr9 93705296 93706070 -48565374 + L1MC4a LINE L1 6986 7793 -15 833 180 124 10 chr9 93706080 93706274 -48565170 + L1MA4 LINE L1 6079 6294 -6 26 30 0 0 chr9 93706274 93706307 -48565137 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr9 93706473 93706506 -48564938 + AT_rich Low_complexity Low_complexity 1 33 0 2187 99 0 10 chr9 93706602 93706916 -48564528 + AluSx SINE Alu 1 311 -1 1901 134 14 0 chr9 93707154 93707444 -48564000 - AluSx SINE Alu -18 294 1 2081 94 17 0 chr9 93708582 93708879 -48562565 - AluSp SINE Alu -11 302 1 1962 117 3 23 chr9 93709926 93710235 -48561209 - AluSx SINE Alu -9 303 1 24 0 0 0 chr9 93711390 93711414 -48560030 + AT_rich Low_complexity Low_complexity 1 24 0 926 230 107 94 chr9 93711443 93712030 -48559414 - MLT1G1 LTR MaLR 0 595 1 341 192 55 14 chr9 93713326 93713399 -48558045 - MER58 DNA MER1_type -2 2418 2343 * 608 230 240 5 chr9 93713388 93713592 -48557852 - MER58 DNA MER1_type -2163 257 6 1444 230 78 28 chr9 93713746 93714180 -48557264 - L1MD2 LINE L1 -218 6141 5686 1338 212 10 7 chr9 93714188 93714480 -48556964 + AluJo SINE Alu 8 300 -12 430 198 44 0 chr9 93714481 93714572 -48556872 - L1MD2 LINE L1 -471 5695 5601 882 247 66 66 chr9 93714674 93715111 -48556333 - L1MDb LINE L1 -5198 1211 775 441 0 0 0 chr9 93715201 93715250 -48556194 + (CA)n Simple_repeat Simple_repeat 2 50 0 708 191 52 57 chr9 93716058 93716268 -48555176 + MER3 DNA MER1_type 1 209 0 1111 116 35 0 chr9 93716314 93716487 -48554957 + AluSg/x SINE Alu 124 302 -8 2072 128 0 13 chr9 93716487 93716800 -48554644 + AluSg SINE Alu 1 309 -1 190 204 23 0 chr9 93717841 93717885 -48553559 - L2 LINE L2 -1514 1800 1756 2089 170 65 91 chr9 93718990 93719425 -48552019 - L1MB8 LINE L1 -16 6162 5744 225 0 0 0 chr9 93719425 93719450 -48551994 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 2089 170 65 91 chr9 93719450 93719596 -48551848 - L1MB8 LINE L1 -434 5744 5596 756 163 0 37 chr9 93719596 93719731 -48551713 + AluJo SINE Alu 17 146 -166 3154 181 46 31 chr9 93719750 93720050 -48551394 - L1MB8 LINE L1 -600 5584 5290 1357 122 125 122 chr9 93720050 93720219 -48551225 - MLT1A2 LTR MaLR -4 370 203 1682 180 0 13 chr9 93720219 93720535 -48550909 - AluJo SINE Alu 0 312 1 1357 122 125 122 chr9 93720535 93720570 -48550874 - MLT1A2 LTR MaLR -171 203 170 2179 84 0 23 chr9 93720570 93720869 -48550575 - AluY SINE Alu -19 292 1 1357 122 125 122 chr9 93720869 93721032 -48550412 - MLT1A2 LTR MaLR -204 170 1 3154 181 46 31 chr9 93721032 93721817 -48549627 - L1MB8 LINE L1 -894 5290 4475 262 122 0 24 chr9 93723638 93723679 -48547765 - MLT1B LTR MaLR -350 40 1 357 245 39 29 chr9 93724685 93724724 -48546720 - L1ME1 LINE L1 -5 6161 6124 2078 127 13 0 chr9 93724724 93725032 -48546412 + AluSx SINE Alu 1 312 0 357 245 39 29 chr9 93725032 93725094 -48546350 - L1ME1 LINE L1 -42 6124 6059 1130 220 101 26 chr9 93725328 93725673 -48545771 + MLT1B LTR MaLR 1 371 -19 2000 101 23 23 chr9 93727602 93727910 -48543534 + AluSx SINE Alu 1 308 -4 379 320 71 53 chr9 93729020 93729342 -48542102 - L1MC4a LINE L1 -1983 6061 5734 1131 211 104 23 chr9 93729403 93729711 -48541733 + MLT1D LTR MaLR 1 333 -172 522 180 40 0 chr9 93729742 93729842 -48541602 + MLT1D LTR MaLR 398 501 -4 21 36 0 0 chr9 93729870 93729898 -48541546 + AT_rich Low_complexity Low_complexity 1 28 0 2236 96 0 6 chr9 93730194 93730507 -48540937 + AluY SINE Alu 1 311 0 382 221 149 45 chr9 93730511 93730665 -48540779 - L1MC4a LINE L1 -1286 5096 4927 272 292 85 51 chr9 93730738 93730818 -48540626 - L1MC4a LINE L1 -1554 4828 4752 1964 122 7 3 chr9 93730818 93731113 -48540331 + AluSg SINE Alu 1 296 -14 272 292 85 51 chr9 93731113 93731385 -48540059 - L1MC4a LINE L1 -1630 4752 4464 321 47 0 0 chr9 93731740 93731783 -48539661 + (CA)n Simple_repeat Simple_repeat 2 44 0 411 318 133 26 chr9 93733371 93733717 -48537727 - LTR16C LTR ERVL -2 489 107 1482 164 34 0 chr9 93735506 93735774 -48535670 + AluJo SINE Alu 1 277 -35 1881 165 61 3 chr9 93735810 93736173 -48535271 + MLT1B LTR MaLR 6 389 -1 241 246 185 81 chr9 93736230 93736441 -48535003 - MIR SINE MIR -8 254 22 239 272 0 43 chr9 93736966 93737128 -48534316 + G-rich Low_complexity Low_complexity 2 156 0 390 322 49 29 chr9 93737294 93737499 -48533945 - L1MC4a LINE L1 -4134 2429 2221 445 262 68 45 chr9 93737662 93737883 -48533561 - L1MC4a LINE L1 -4479 1905 1680 1544 183 111 0 chr9 93737892 93738225 -48533219 - L1MA6 LINE L1 0 6300 5931 2273 74 14 0 chr9 93738263 93738560 -48532884 - AluSx SINE Alu -11 301 1 2483 249 25 68 chr9 93738624 93739412 -48532032 - MER21B LTR ERV1 -109 754 1 2038 110 3 0 chr9 93739584 93739896 -48531548 + AluSx SINE Alu 1 313 0 1639 157 8 8 chr9 93739914 93740209 -48531235 + AluJo SINE Alu 20 314 0 1626 185 120 46 chr9 93740407 93740840 -48530604 + MLT1C LTR MaLR 1 465 -2 291 28 0 0 chr9 93740953 93740989 -48530455 + (CA)n Simple_repeat Simple_repeat 2 37 0 1763 127 22 4 chr9 93741148 93741495 -48529949 + AluSx SINE Alu 21 312 0 2070 114 13 0 chr9 93741874 93742182 -48529262 - AluSp SINE Alu -1 312 1 319 296 65 19 chr9 93742350 93742458 -48528986 + L1MB3 LINE L1 5337 5449 -2359 539 229 9 0 chr9 93742460 93742565 -48528879 - FLAM_A SINE Alu -36 106 1 283 170 15 52 chr9 93742584 93742662 -48528782 + L1MB3 LINE L1 5499 5572 -612 438 221 239 84 chr9 93742775 93743110 -48528334 - MLT1H1 LTR MaLR 0 555 169 308 328 0 0 chr9 93743112 93743196 -48528248 - AluS SINE Alu 0 307 224 995 174 68 5 chr9 93743368 93743575 -48527869 + L1MB3 LINE L1 5915 6134 -49 245 279 39 39 chr9 93744298 93744402 -48527042 - MLT1L LTR MaLR -375 240 137 1651 136 158 181 chr9 93744975 93745570 -48525874 - LTR12 LTR ERV1 -133 581 1 378 280 11 0 chr9 93747506 93747599 -48523845 - L3 LINE CR1 -177 1400 1307 2185 61 24 3 chr9 93747613 93747907 -48523537 + AluY SINE Alu 1 300 -11 245 284 0 12 chr9 93748133 93748214 -48523230 - MER116 DNA Mariner 0 80 1 570 215 0 8 chr9 93748236 93748357 -48523087 + L1MB7 LINE L1 6043 6162 -22 1798 168 3 0 chr9 93749850 93750148 -48521296 + AluJo SINE Alu 1 299 -13 286 302 155 16 chr9 93750229 93750358 -48521086 - L2 LINE L2 -2 3311 3165 2085 79 27 0 chr9 93751206 93751498 -48519946 + AluSx SINE Alu 1 300 -12 1708 176 41 31 chr9 93751506 93751715 -48519729 + L1MB3 LINE L1 5276 5492 -682 374 38 0 19 chr9 93751715 93751768 -48519676 + (CAA)n Simple_repeat Simple_repeat 2 53 0 1708 176 41 31 chr9 93751768 93751945 -48519499 + L1MB3 LINE L1 5492 5666 -508 2492 56 0 0 chr9 93752074 93752376 -48519068 - AluY SINE Alu -9 302 1 723 202 69 39 chr9 93752852 93753055 -48518389 + MER3 DNA MER1_type 1 209 0 538 186 120 104 chr9 93754064 93754135 -48517309 - MER5A DNA MER1_type 0 189 121 2209 56 35 0 chr9 93754135 93754419 -48517025 + AluY SINE Alu 1 294 -17 538 186 120 104 chr9 93754419 93754458 -48516986 - MER5A DNA MER1_type -68 121 84 1741 167 3 28 chr9 93754458 93754776 -48516668 - AluJb SINE Alu -2 310 1 538 186 120 104 chr9 93754776 93754847 -48516597 - MER5A DNA MER1_type -105 84 4 303 28 0 0 chr9 93755086 93755122 -48516322 + (TG)n Simple_repeat Simple_repeat 1 36 0 2074 98 7 20 chr9 93755585 93755723 -48515721 + AluSx SINE Alu 1 139 -173 2291 61 3 10 chr9 93755723 93756020 -48515424 + AluY SINE Alu 1 295 -16 2074 98 7 20 chr9 93756020 93756187 -48515257 + AluSx SINE Alu 139 302 -10 1565 188 9 38 chr9 93756319 93756664 -48514780 + L1MB3 LINE L1 5849 6183 0 196 250 0 59 chr9 93756723 93756791 -48514653 + L2 LINE L2 2650 2713 -601 1451 209 100 83 chr9 93757172 93757183 -48514261 + MER74B LTR ERVL 1 10 -612 2216 89 10 3 chr9 93757183 93757487 -48513957 - AluSx SINE Alu -6 306 1 1451 209 100 83 chr9 93757487 93758015 -48513429 + MER74B LTR ERVL 10 549 -73 516 286 60 15 chr9 93758171 93758370 -48513074 + MIR SINE MIR 21 228 -34 410 215 35 62 chr9 93759603 93759747 -48511697 + MER5B DNA MER1_type 1 140 -38 295 194 104 0 chr9 93759754 93759821 -48511623 - MER5B DNA MER1_type 0 178 105 1241 226 35 5 chr9 93759908 93760242 -48511202 + LTR10B LTR ERV1 181 547 0 226 287 7 44 chr9 93761357 93761493 -48509951 + L1ME4a LINE L1 2898 3028 -3118 362 311 152 61 chr9 93761497 93762075 -48509369 + L1ME4a LINE L1 4629 5282 -864 1596 96 8 29 chr9 93762075 93762315 -48509129 + AluSg/x SINE Alu 78 312 0 362 311 152 61 chr9 93762315 93762428 -48509016 + L1ME4a LINE L1 5282 5383 -763 240 306 40 24 chr9 93762515 93762639 -48508805 + L1ME4a LINE L1 5481 5606 -515 1840 100 7 15 chr9 93762674 93762943 -48508501 + AluY SINE Alu 21 287 -24 359 253 59 145 chr9 93762969 93763293 -48508151 + L1ME4a LINE L1 5638 5933 -188 1635 165 30 36 chr9 93763310 93763644 -48507800 + L1MB5 LINE L1 5843 6174 0 1964 133 0 3 chr9 93763910 93764203 -48507241 - AluSc SINE Alu -11 298 7 3677 252 70 15 chr9 93764208 93766019 -48505425 - L1MEc LINE L1 -2449 3766 1883 307 232 0 0 chr9 93766417 93766473 -48504971 - MIR SINE MIR -22 240 185 2446 274 134 39 chr9 93767273 93767633 -48503811 - L2 LINE L2 -133 3180 2856 2071 101 3 3 chr9 93767633 93767929 -48503515 - AluSg SINE Alu -14 296 1 2446 274 134 39 chr9 93767929 93768708 -48502736 - L2 LINE L2 -457 2856 1895 2079 109 0 0 chr9 93768708 93769020 -48502424 + AluSx SINE Alu 1 312 0 2446 274 134 39 chr9 93769020 93769087 -48502357 - L2 LINE L2 -1418 1895 1836 5438 216 47 19 chr9 93769088 93769948 -48501496 + L1M4 LINE L1 4 839 -5703 2377 134 22 6 chr9 93769948 93770307 -48501137 - MLT1A1 LTR MaLR 0 365 1 5438 216 47 19 chr9 93770307 93770447 -48500997 + L1M4 LINE L1 839 974 -5568 1928 170 0 0 chr9 93770447 93770747 -48500697 - AluJb SINE Alu -12 300 1 5438 216 47 19 chr9 93770747 93770946 -48500498 + L1M4 LINE L1 974 1237 -5305 863 98 8 8 chr9 93770949 93771072 -48500372 + AluSg SINE Alu 1 123 -187 284 138 17 17 chr9 93771262 93771320 -48500124 + (CA)n Simple_repeat Simple_repeat 2 59 0 1006 213 38 13 chr9 93771357 93771588 -48499856 - MLT1B LTR MaLR -17 450 214 984 133 13 7 chr9 93771588 93771739 -48499705 + MLT1A2 LTR MaLR 1 152 -222 6457 80 3 2 chr9 93771739 93772105 -48499339 - L1PA11 LINE L1 0 6174 5810 249 33 0 0 chr9 93772105 93772135 -48499309 + (TA)n Simple_repeat Simple_repeat 1 30 0 6457 80 3 2 chr9 93772135 93773113 -48498331 - L1PA11 LINE L1 -364 5810 4802 3876 233 45 22 chr9 93773113 93774058 -48497386 - L1PA12 LINE L1 -6613 968 2 771 218 71 10 chr9 93774089 93774286 -48497158 + MLT1A2 LTR MaLR 182 374 0 * 1054 211 5 14 chr9 93774286 93774497 -48496947 - MLT1B LTR MaLR -181 209 1 929 247 135 53 chr9 93775083 93775594 -48495850 + MLT1H1 LTR MaLR 1 553 -2 1954 123 13 3 chr9 93775655 93775963 -48495481 + AluY SINE Alu 1 311 0 240 306 40 24 chr9 93776163 93776287 -48495157 + L1ME4a LINE L1 5481 5606 -515 1840 100 7 15 chr9 93776322 93776591 -48494853 + AluY SINE Alu 21 287 -24 359 253 59 145 chr9 93776617 93776941 -48494503 + L1ME4a LINE L1 5638 5933 -188 1601 168 30 36 chr9 93776958 93777292 -48494152 + L1MB5 LINE L1 5843 6174 0 1453 153 88 75 chr9 93779492 93779877 -48491567 - MLT1B LTR MaLR 0 390 1 2705 3 0 0 chr9 93780018 93780317 -48491127 + AluYa5 SINE Alu 1 299 -12 1803 131 20 24 chr9 93780988 93781286 -48490158 - AluJo SINE Alu -15 297 1 1293 164 65 55 chr9 93781447 93781740 -48489704 + AluSx SINE Alu 1 296 -16 895 190 6 0 chr9 93781744 93781902 -48489542 + FRAM SINE Alu 1 158 -18 2142 99 0 3 chr9 93782237 93782529 -48488915 + AluSc SINE Alu 1 291 -18 306 292 55 32 chr9 93782641 93782860 -48488584 - L1M4 LINE L1 -699 5479 5256 315 281 132 16 chr9 93783578 93783699 -48487745 + L1MC5 LINE L1 7792 7926 -35 1975 109 0 32 chr9 93783860 93784173 -48487271 - AluSx SINE Alu -9 303 1 2329 84 0 0 chr9 93784254 93784565 -48486879 - AluY SINE Alu 0 311 1 844 256 104 119 chr9 93784570 93785047 -48486397 - L1MC4 LINE L1 0 8042 7559 198 0 0 0 chr9 93785047 93785069 -48486375 + (TTCTC)n Simple_repeat Simple_repeat 4 25 0 2047 119 0 0 chr9 93785072 93785357 -48486087 - AluSg SINE Alu -25 285 1 844 256 104 119 chr9 93785357 93785840 -48485604 - L1MC4 LINE L1 -485 7557 7093 963 199 58 141 chr9 93785878 93786254 -48485190 + MLT1C LTR MaLR 46 467 0 2330 245 51 42 chr9 93786259 93787137 -48484307 - L1MC4a LINE L1 -814 6994 6109 2774 203 31 18 chr9 93787140 93787298 -48484146 + L1 LINE L1 3961 4116 -2030 1679 156 100 16 chr9 93787298 93787619 -48483825 - MER7A DNA MER2_type 0 346 1 2774 203 31 18 chr9 93787619 93788044 -48483400 + L1 LINE L1 4116 4555 -1591 1438 166 19 88 chr9 93788044 93788364 -48483080 + AluJb SINE Alu 1 298 -4 2774 203 31 18 chr9 93788364 93788430 -48483014 + L1 LINE L1 4555 4619 -1527 587 237 7 0 chr9 93788433 93788568 -48482876 + MER3 DNA MER1_type 73 208 -1 27 29 0 0 chr9 93791145 93791179 -48480265 + AT_rich Low_complexity Low_complexity 1 34 0 2120 114 3 0 chr9 93793438 93793744 -48477700 - AluSx SINE Alu -5 307 1 1089 319 97 44 chr9 93794192 93795399 -48476045 - L2 LINE L2 -91 3181 1906 419 232 16 0 chr9 93795779 93795904 -48475540 + L1ME LINE L1 5101 5227 -919 1828 149 0 10 chr9 93795956 93796258 -48475186 - AluJo SINE Alu -11 301 3 371 245 19 21 chr9 93796310 93796471 -48474973 + L1ME LINE L1 5272 5436 -728 267 326 31 10 chr9 93796489 93796587 -48474857 + L2 LINE L2 2901 3000 -313 2334 227 44 10 chr9 93796716 93797218 -48474226 + MLT1F LTR MaLR 24 542 0 181 250 21 21 chr9 93797542 93797590 -48473854 - MIR SINE MIR -98 110 63 817 247 38 11 chr9 93799503 93799689 -48471755 - MLT2D LTR ERVL -48 366 176 2108 96 7 0 chr9 93799765 93800047 -48471397 + AluSq SINE Alu 1 284 -29 360 0 0 0 chr9 93800050 93800090 -48471354 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1038 103 10 118 chr9 93800091 93800295 -48471149 - MLT2D LTR ERVL -227 187 6 440 195 0 0 chr9 93800372 93800449 -48470995 - Tigger7 DNA MER2_type -20 2467 2391 * 1150 203 22 62 chr9 93800447 93800563 -48470881 - Tigger7 DNA MER2_type -284 266 147 2016 129 3 0 chr9 93800563 93800858 -48470586 + AluSq SINE Alu 1 296 -17 2118 124 0 0 chr9 93800858 93801156 -48470288 + AluSg SINE Alu 1 299 -11 1150 203 22 62 chr9 93801156 93801314 -48470130 - Tigger7 DNA MER2_type -401 149 2 1254 144 27 173 chr9 93801445 93801546 -48469898 + MLT1A1 LTR MaLR 1 115 -250 1809 143 29 0 chr9 93801546 93801825 -48469619 + AluSx SINE Alu 1 287 -25 414 39 0 0 chr9 93801825 93801877 -48469567 + (CATA)n Simple_repeat Simple_repeat 2 53 0 1254 144 27 173 chr9 93801877 93802149 -48469295 + MLT1A1 LTR MaLR 113 320 -45 2299 68 0 7 chr9 93802482 93802775 -48468669 - AluY SINE Alu -20 291 1 1871 113 7 10 chr9 93802777 93803068 -48468376 - AluSq SINE Alu -20 293 4 376 208 88 40 chr9 93803268 93803393 -48468051 - MLT1H LTR MaLR 0 549 419 706 241 48 19 chr9 93803516 93803723 -48467721 - MLT1H LTR MaLR -295 254 42 22 35 0 0 chr9 93804037 93804066 -48467378 + AT_rich Low_complexity Low_complexity 1 29 0 2237 108 3 0 chr9 93804151 93804458 -48466986 + AluSq SINE Alu 3 310 -3 2038 148 27 91 chr9 93804541 93804925 -48466519 + L1MB3 LINE L1 5731 6085 -98 1741 80 0 21 chr9 93804925 93805164 -48466280 - AluY SINE Alu -34 277 44 2038 148 27 91 chr9 93805164 93805219 -48466225 + L1MB3 LINE L1 6085 6142 -41 2892 50 3 0 chr9 93805220 93805560 -48465884 + HERV17 LTR ERV1 4210 4550 -4076 * 7281 58 1 0 chr9 93805547 93806412 -48465032 + HERV17 LTR ERV1 7757 8622 -4 2660 65 0 3 chr9 93806415 93806740 -48464704 + LTR17 LTR ERV1 1 324 -456 2194 113 3 0 chr9 93806778 93807088 -48464356 - AluSx SINE Alu -1 311 1 304 65 0 0 chr9 93807088 93807134 -48464310 + L1MB3 LINE L1 6137 6182 -1 2050 125 3 0 chr9 93807270 93807601 -48463843 - AluSq SINE Alu 0 332 1 1563 252 38 49 chr9 93808389 93808937 -48462507 + MER34 LTR ERV1 1 542 0 2157 88 3 36 chr9 93809021 93809327 -48462117 + AluSx SINE Alu 1 296 -16 516 212 56 39 chr9 93809597 93809724 -48461720 - L1MB7 LINE L1 -5 6179 6047 2005 138 3 0 chr9 93809724 93810029 -48461415 + AluSx SINE Alu 1 306 -6 516 212 56 39 chr9 93810029 93810080 -48461364 - L1MB7 LINE L1 -137 6047 5998 17266 165 45 5 chr9 93810080 93812996 -48458448 + ERVL LTR ERVL 2120 5152 -612 2131 68 4 4 chr9 93813279 93813738 -48457706 + AluY SINE Alu 1 459 0 934 90 0 15 chr9 93813841 93813974 -48457470 - AluSc SINE Alu -178 131 1 384 306 137 34 chr9 93813975 93814413 -48457031 + L1MC5 LINE L1 7297 7779 -182 2508 145 9 42 chr9 93814431 93814879 -48456565 - Tigger2a DNA MER2_type 0 434 2 21 36 0 0 chr9 93814911 93814939 -48456505 + AT_rich Low_complexity Low_complexity 1 28 0 470 247 105 105 chr9 93815123 93815477 -48455967 - MLT1L LTR MaLR -45 570 111 204 419 34 14 chr9 93815708 93815856 -48455588 - L2 LINE L2 -5 3267 3117 2226 91 7 0 chr9 93815890 93816199 -48455245 + AluSq SINE Alu 1 311 -2 2161 102 0 0 chr9 93817901 93818194 -48453250 + AluSx SINE Alu 5 297 -15 625 104 14 146 chr9 93818200 93818302 -48453142 - L1MB3 LINE L1 -4 6179 6100 1721 144 6 38 chr9 93818302 93818615 -48452829 + AluJo SINE Alu 10 312 0 625 104 14 146 chr9 93818615 93818656 -48452788 - L1MB3 LINE L1 -83 6100 6055 498 100 29 0 chr9 93818665 93818735 -48452709 - AluJb SINE Alu -170 142 71 1714 219 72 56 chr9 93818949 93819501 -48451943 - MER34B LTR ERV1 0 565 5 284 276 126 0 chr9 93820268 93820395 -48451049 + MER104 DNA Tc2 35 177 -3 2335 71 7 3 chr9 93822620 93822930 -48448514 + AluY SINE Alu 1 311 0 316 317 50 50 chr9 93822984 93823145 -48448299 + MER58A DNA MER1_type 16 176 -48 269 272 239 11 chr9 93823450 93823619 -48447825 - L2 LINE L2 -1 3312 3098 1471 163 40 0 chr9 93823619 93823870 -48447574 - AluJb SINE Alu -51 261 1 562 289 34 10 chr9 93825064 93825268 -48446176 + MER3 DNA MER1_type 1 209 0 652 130 33 57 chr9 93825546 93825707 -48445737 + L1MB7 LINE L1 6017 6178 0 1009 275 134 14 chr9 93829108 93829337 -48442107 + L1MB8 LINE L1 3175 3375 -2771 1718 136 44 7 chr9 93829337 93829631 -48441813 + AluSq SINE Alu 2 306 -7 1009 275 134 14 chr9 93829631 93829907 -48441537 + L1MB8 LINE L1 3375 3741 -2405 318 313 0 0 chr9 93829907 93829987 -48441457 + L1MB8 LINE L1 4106 4185 -1961 2915 218 74 35 chr9 93829992 93830114 -48441330 + L1MB8 LINE L1 4365 4481 -1703 2083 115 0 0 chr9 93830114 93830410 -48441034 + AluSg SINE Alu 1 296 -14 2048 136 0 10 chr9 93830414 93830724 -48440720 + AluSx SINE Alu 1 307 -5 2915 218 74 35 chr9 93830724 93831138 -48440306 + L1MB8 LINE L1 4483 4879 -1305 1215 240 109 32 chr9 93831138 93831605 -48439839 + MLT1D LTR MaLR 1 503 -2 2915 218 74 35 chr9 93831605 93832257 -48439187 + L1MB8 LINE L1 4879 5504 -680 1919 198 37 6 chr9 93832257 93832611 -48438833 + MLT1A1 LTR MaLR 1 365 0 2915 218 74 35 chr9 93832611 93832736 -48438708 + L1MB8 LINE L1 5504 5623 -561 2562 102 62 0 chr9 93832736 93833089 -48438355 - THE1C LTR MaLR 0 375 1 2915 218 74 35 chr9 93833089 93833292 -48438152 + L1MB8 LINE L1 5623 5948 -236 1660 101 4 13 chr9 93833295 93833523 -48437921 + AluSp SINE Alu 1 226 -87 482 230 61 30 chr9 93833623 93833788 -48437656 + L1MB8 LINE L1 5945 6114 -64 1339 186 98 4 chr9 93834264 93834528 -48436916 - AluJo SINE Alu -18 294 6 1834 147 86 13 chr9 93834711 93835025 -48436419 - MER1B DNA MER1_type 0 337 1 2013 123 0 0 chr9 93836114 93836383 -48435061 - AluSg SINE Alu -41 269 1 685 267 31 14 chr9 93836383 93836613 -48434831 - L1MC4a LINE L1 -317 5804 5584 2106 99 42 0 chr9 93836619 93836902 -48434542 - AluSp SINE Alu -18 295 1 2285 122 0 0 chr9 93837040 93837351 -48434093 - AluSx SINE Alu -1 311 1 889 145 6 0 chr9 93838085 93838244 -48433200 + AluSp SINE Alu 1 160 -153 4395 232 65 32 chr9 93838357 93839777 -48431667 - L1MDb LINE L1 -3049 3491 2119 2070 153 47 34 chr9 93839777 93840162 -48431282 - MLT1B LTR MaLR 0 390 1 4395 232 65 32 chr9 93840162 93841234 -48430210 - L1MDb LINE L1 -4421 2119 944 1734 185 87 53 chr9 93841234 93841613 -48429831 + MSTD LTR MaLR 1 392 -4 4395 232 65 32 chr9 93841613 93841756 -48429688 - L1MDb LINE L1 -5596 944 807 726 284 51 40 chr9 93842018 93842332 -48429112 - L1MDb LINE L1 -6196 344 67 1255 151 5 23 chr9 93842350 93842569 -48428875 - AluSg/x SINE Alu -13 297 83 412 172 0 0 chr9 93842569 93842633 -48428811 - AluSp/q SINE Alu -63 250 187 1868 90 32 32 chr9 93842733 93843010 -48428434 + AluSx SINE Alu 24 300 -12 1771 96 25 90 chr9 93843024 93843347 -48428097 + AluSx SINE Alu 3 304 -8 479 285 27 27 chr9 93843658 93843844 -48427600 - LTR16C LTR ERVL -7 484 299 315 265 24 0 chr9 93844404 93844487 -48426957 + HAL1 LINE L1 771 855 -1652 2398 99 0 0 chr9 93844650 93844953 -48426491 - AluSx SINE Alu -9 303 1 1652 168 17 3 chr9 93845003 93845300 -48426144 - AluJb SINE Alu -11 301 1 1143 92 0 0 chr9 93845722 93845864 -48425580 - AluSq/x SINE Alu -171 142 1 975 186 186 0 chr9 93845865 93846075 -48425369 + MER57A LTR ERV1 125 373 -30 2106 94 4 4 chr9 93846075 93846384 -48425060 - AluSg SINE Alu 0 313 5 251 275 12 38 chr9 93846574 93846654 -48424790 + L1MC/D LINE L1 5701 5778 -2030 238 136 86 193 chr9 93846739 93846837 -48424607 - L2 LINE L2 -2752 562 482 2444 57 7 13 chr9 93846837 93847136 -48424308 + AluSc SINE Alu 1 297 -12 238 136 86 193 chr9 93847136 93847177 -48424267 - L2 LINE L2 -2832 482 438 * 953 238 250 43 chr9 93847166 93847726 -48423718 + L2 LINE L2 1116 1791 -1523 366 158 61 0 chr9 93847789 93847871 -48423573 - L1M4 LINE L1 -5230 1312 1226 1132 377 6 57 chr9 93847873 93848189 -48423255 - AluSx SINE Alu 0 302 3 248 319 58 0 chr9 93848199 93848337 -48423107 + HAL1 LINE L1 1091 1236 -1271 776 156 78 0 chr9 93848337 93848465 -48422979 + AluSg/x SINE Alu 166 303 -7 1605 99 0 0 chr9 93848506 93848707 -48422737 - AluSc SINE Alu -108 201 1 2313 69 46 16 chr9 93848709 93849013 -48422431 - AluSp SINE Alu 0 313 1 394 269 103 17 chr9 93849712 93849887 -48421557 + MLT1L LTR MaLR 339 528 -87 1163 258 32 60 chr9 93849947 93850481 -48420963 + MER34 LTR ERV1 24 542 0 306 270 90 0 chr9 93850509 93850620 -48420824 + HAL1 LINE L1 1461 1581 -926 272 260 121 8 chr9 93850663 93850878 -48420566 - L1M2 LINE L1 -743 5403 5203 2487 85 0 0 chr9 93851110 93851415 -48420029 + AluSq SINE Alu 1 305 -8 3265 170 6 2 chr9 93851587 93852099 -48419345 - MLT2B3 LTR ERVL -40 514 1 1101 168 6 0 chr9 93852772 93852945 -48418499 + AluJb SINE Alu 118 291 -21 26 0 0 0 chr9 93853136 93853162 -48418282 + AT_rich Low_complexity Low_complexity 1 26 0 409 97 0 65 chr9 93853201 93853288 -48418156 - Alu SINE Alu 0 310 228 2374 112 0 0 chr9 93853878 93854190 -48417254 + AluSq SINE Alu 1 312 -1 2345 105 0 3 chr9 93854272 93854577 -48416867 + AluSg SINE Alu 6 309 -1 200 367 44 0 chr9 93854830 93854920 -48416524 - L2 LINE L2 -43 3229 3136 760 291 102 44 chr9 93855487 93855735 -48415709 + L1M4 LINE L1 3713 3945 -2201 1013 203 11 23 chr9 93855735 93855912 -48415532 + FAM SINE Alu 1 175 0 760 291 102 44 chr9 93855912 93856293 -48415151 + L1M4 LINE L1 3945 4378 -1768 1480 287 100 6 chr9 93856445 93857083 -48414361 + L2 LINE L2 2203 2900 -414 522 295 181 41 chr9 93857150 93857709 -48413735 - L2 LINE L2 -971 2343 1707 998 26 9 0 chr9 93858493 93858608 -48412836 + L1PA2 LINE L1 6040 6155 0 243 0 0 0 chr9 93858624 93858651 -48412793 + (A)n Simple_repeat Simple_repeat 1 27 0 323 228 90 19 chr9 93858714 93858911 -48412533 + HAL1b LINE L1 1232 1348 0 222 118 0 0 chr9 93861055 93861089 -48410355 + (CA)n Simple_repeat Simple_repeat 2 35 0 2617 232 89 8 chr9 93861728 93862332 -48409112 - MER82 DNA MER2_type 0 653 1 1074 169 0 0 chr9 93862384 93862550 -48408894 - AluJb SINE Alu -11 301 136 5296 209 42 5 chr9 93862868 93864097 -48407347 + L1M4 LINE L1 3815 5089 -1057 2193 106 3 0 chr9 93864107 93864400 -48407044 - AluY SINE Alu -17 294 1 917 142 0 0 chr9 93864402 93864529 -48406915 - AluSq/x SINE Alu -177 135 9 267 31 0 0 chr9 93864675 93864707 -48406737 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2288 73 0 17 chr9 93864763 93865074 -48406370 + AluSg SINE Alu 1 306 0 525 198 0 0 chr9 93865225 93865351 -48406093 + (TCCA)n Simple_repeat Simple_repeat 3 128 0 2618 71 0 0 chr9 93865438 93865746 -48405698 + AluSc SINE Alu 1 308 -1 31 0 0 0 chr9 93866409 93866440 -48405004 + AT_rich Low_complexity Low_complexity 1 31 0 2220 106 0 0 chr9 93866680 93866962 -48404482 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr9 93866967 93866990 -48404454 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 196 300 33 0 chr9 93867647 93867707 -48403737 - MIR SINE MIR -124 138 77 2384 63 0 13 chr9 93868617 93868918 -48402526 - AluY SINE Alu -14 297 1 1897 83 0 4 chr9 93868978 93869246 -48402198 - AluSc SINE Alu 0 305 39 830 116 25 0 chr9 93869438 93869559 -48401885 - AluSg SINE Alu -186 124 1 2215 100 3 7 chr9 93870245 93870544 -48400900 + AluSx SINE Alu 1 298 -14 1900 164 0 3 chr9 93870796 93871113 -48400331 + AluSx SINE Alu 1 312 0 2370 233 60 16 chr9 93871335 93872001 -48399443 + L1MC4a LINE L1 7114 7808 0 1101 117 12 0 chr9 93872288 93872451 -48398993 - MER73 LTR ERVL -476 168 4 1778 135 0 32 chr9 93872724 93873032 -48398412 + AluJb SINE Alu 13 311 0 180 0 0 0 chr9 93873032 93873052 -48398392 + (T)n Simple_repeat Simple_repeat 1 20 0 6596 62 15 46 chr9 93873072 93874075 -48397369 - SVA Other Other 0 1386 433 1117 78 48 48 chr9 93874092 93874363 -48397081 - SVA Other Other -520 866 596 871 187 12 23 chr9 93874541 93874712 -48396732 + MLT1F1 LTR MaLR 1 169 -398 860 298 11 36 chr9 93874723 93875086 -48396358 + MLT1D-int LTR MaLR 248 601 -770 1332 239 48 3 chr9 93875161 93875475 -48395969 + MER58B DNA MER1_type 2 329 -12 1021 165 6 35 chr9 93875551 93875721 -48395723 + FRAM SINE Alu 2 166 0 587 253 58 106 chr9 93876065 93876444 -48395000 + MLT1D-int LTR MaLR 964 1324 -47 1017 213 50 16 chr9 93876537 93876795 -48394649 - L1MD3 LINE L1 0 7995 7729 1435 222 113 28 chr9 93876927 93877386 -48394058 + MLT1D LTR MaLR 8 505 0 2320 96 0 0 chr9 93877894 93878185 -48393259 - AluSx SINE Alu -21 291 1 391 246 33 82 chr9 93878228 93878411 -48393033 + L1MC5 LINE L1 7703 7876 -85 352 202 48 0 chr9 93878598 93878682 -48392762 - L1ME LINE L1 -467 5654 5567 1595 167 98 4 chr9 93879997 93880272 -48391172 + AluJo SINE Alu 1 301 -11 241 196 155 10 chr9 93880574 93880671 -48390773 - L2 LINE L2 -1265 2049 1939 247 184 0 0 chr9 93880969 93881007 -48390437 + Alu SINE Alu 1 38 -265 257 227 45 15 chr9 93881969 93882035 -48389409 + MIR3 SINE MIR 123 190 -18 4887 151 20 29 chr9 93883183 93884064 -48387380 + L1PA15 LINE L1 5083 5915 -444 2095 137 3 0 chr9 93884064 93884363 -48387081 + AluJb SINE Alu 1 300 -12 4887 151 20 29 chr9 93884363 93884786 -48386658 + L1PA15 LINE L1 5915 6340 -19 1962 137 7 3 chr9 93884794 93885086 -48386358 - AluSx SINE Alu -19 293 1 24 32 0 0 chr9 93885089 93885120 -48386324 + AT_rich Low_complexity Low_complexity 1 31 0 716 290 45 0 chr9 93885122 93885346 -48386098 + MIR SINE MIR 21 254 -8 28 61 0 0 chr9 93885414 93885463 -48385981 + AT_rich Low_complexity Low_complexity 1 49 0 294 333 77 19 chr9 93885565 93885772 -48385672 + MIR SINE MIR 23 241 -21 2234 117 0 7 chr9 93887089 93887398 -48384046 + AluSx SINE Alu 1 307 -5 252 273 117 13 chr9 93887829 93887906 -48383538 + L2 LINE L2 3168 3252 -20 1818 166 0 7 chr9 93888690 93888992 -48382452 - AluJb SINE Alu -9 303 4 1857 156 57 21 chr9 93889352 93889553 -48381891 - MER7A DNA MER2_type -2693 345 128 2046 183 37 37 chr9 93889553 93889985 -48381459 + MSTB1 LTR MaLR 1 432 0 1857 156 57 21 chr9 93889985 93890117 -48381327 - MER7A DNA MER2_type -2910 128 2 902 171 28 39 chr9 93890514 93890695 -48380749 - AluJo SINE Alu -133 179 1 245 149 43 0 chr9 93890695 93890742 -48380702 + MER6 DNA MER2_type 814 862 -3 1977 157 3 6 chr9 93893549 93893861 -48377583 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr9 93894114 93894136 -48377308 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 93894218 93894239 -48377205 + AT_rich Low_complexity Low_complexity 1 21 0 362 66 98 0 chr9 93894975 93895036 -48376408 - MER41B LTR ERV1 -88 547 481 491 262 156 0 chr9 93895108 93895230 -48376214 - MIR SINE MIR -116 146 6 2269 100 0 25 chr9 93895604 93895924 -48375520 + AluSx SINE Alu 1 312 0 1025 62 0 8 chr9 93896059 93896187 -48375257 + AluSg/x SINE Alu 173 299 -13 280 265 87 63 chr9 93896350 93896637 -48374807 + L1MC5 LINE L1 7624 7917 -44 633 167 0 0 chr9 93896641 93896743 -48374701 + L1PB4 LINE L1 6054 6155 -1 285 303 84 39 chr9 93896869 93897024 -48374420 - MIR SINE MIR -100 162 1 315 282 58 0 chr9 93897166 93897269 -48374175 + L1ME1 LINE L1 6033 6141 -25 289 263 61 35 chr9 93898323 93898437 -48373007 - MIR SINE MIR -114 148 32 1256 104 104 10 chr9 93900227 93900429 -48371015 + AluSg SINE Alu 27 247 -63 1485 137 18 0 chr9 93900503 93900729 -48370715 + AluJo SINE Alu 71 300 -12 468 282 84 72 chr9 93901682 93902086 -48369358 - L1MC4a LINE L1 -125 5996 5588 2901 185 51 3 chr9 93902703 93903275 -48368169 - L1MB3 LINE L1 -31 6152 5554 23 54 0 0 chr9 93904089 93904126 -48367318 + AT_rich Low_complexity Low_complexity 1 37 0 2081 134 3 0 chr9 93904173 93904471 -48366973 - AluSx SINE Alu -13 299 1 944 246 105 28 chr9 93904842 93905203 -48366241 + L1MC4 LINE L1 7501 7889 -153 2417 82 0 0 chr9 93905359 93905662 -48365782 - AluY SINE Alu -8 303 1 4408 176 61 20 chr9 93905663 93905944 -48365500 + L1MB5 LINE L1 5075 5343 -831 180 97 0 0 chr9 93905944 93905975 -48365469 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 4408 176 61 20 chr9 93905975 93906760 -48364684 + L1MB5 LINE L1 5343 6166 -8 2348 106 3 0 chr9 93906830 93907142 -48364302 + AluSp SINE Alu 1 313 0 664 190 25 147 chr9 93907150 93907455 -48363989 + L1ME2 LINE L1 5910 6331 -3 1982 106 14 24 chr9 93907464 93907757 -48363687 + AluSc SINE Alu 1 290 -19 1593 178 0 4 chr9 93907773 93908043 -48363401 + AluJo SINE Alu 1 269 -43 366 228 83 55 chr9 93908609 93908754 -48362690 + L1ME2 LINE L1 6002 6150 -14 2061 104 14 0 chr9 93909067 93909355 -48362089 - AluSg SINE Alu -17 293 2 590 269 183 27 chr9 93909911 93910473 -48360971 - L1ME4a LINE L1 -151 5970 5321 22 56 0 0 chr9 93910651 93910687 -48360757 + AT_rich Low_complexity Low_complexity 1 36 0 559 241 31 6 chr9 93912327 93912489 -48358955 + MER104 DNA Tc2 1 166 -14 7963 218 120 32 chr9 93912537 93913455 -48357989 + L1MD1 LINE L1 329 1165 -5375 2376 85 0 22 chr9 93913455 93913772 -48357672 + AluY SINE Alu 1 310 -1 7963 218 120 32 chr9 93913772 93915049 -48356395 + L1MD1 LINE L1 1165 2328 -4212 227 123 0 123 chr9 93915049 93915106 -48356338 + U6 snRNA snRNA 1 50 -57 7963 218 120 32 chr9 93915106 93915520 -48355924 + L1MD1 LINE L1 2328 2704 -3836 668 265 0 0 chr9 93915520 93915652 -48355792 + FLAM_A SINE Alu 1 132 -1 7963 218 120 32 chr9 93915652 93917041 -48354403 + L1MD1 LINE L1 2704 4746 -1794 4576 169 84 6 chr9 93917059 93918009 -48353435 + L1MD1 LINE L1 5619 6636 0 21 36 0 0 chr9 93918588 93918616 -48352828 + AT_rich Low_complexity Low_complexity 1 28 0 215 348 11 11 chr9 93918877 93918969 -48352475 - L2 LINE L2 0 3313 3222 400 342 151 22 chr9 93919196 93919556 -48351888 - L2 LINE L2 -191 3081 2671 1714 125 4 29 chr9 93919564 93919843 -48351601 + AluSq SINE Alu 42 313 0 2333 102 0 3 chr9 93919846 93920149 -48351295 + AluSx SINE Alu 1 302 -10 418 306 8 0 chr9 93923489 93923610 -48347834 + MIR SINE MIR 117 238 -24 2057 108 0 34 chr9 93923938 93924233 -48347211 + AluSp SINE Alu 1 285 -28 731 205 94 133 chr9 93924494 93924962 -48346482 + LTR7 LTR ERV1 1 450 0 306 269 9 65 chr9 93925164 93925272 -48346172 + HERVH LTR ERV1 276 377 -7336 18262 245 39 35 chr9 93925357 93931054 -48340390 + HERVH LTR ERV1 596 6213 -1500 1521 199 21 0 chr9 93931304 93931585 -48339859 - AluJb SINE Alu -25 287 1 2225 116 7 0 chr9 93931904 93932206 -48339238 - AluSx SINE Alu -8 304 1 1042 126 0 7 chr9 93932635 93932786 -48338658 - AluJo SINE Alu -162 150 1 1764 126 4 8 chr9 93933369 93933630 -48337814 - AluSx SINE Alu -12 300 41 25 65 0 0 chr9 93933955 93934001 -48337443 + AT_rich Low_complexity Low_complexity 1 46 0 421 228 135 78 chr9 93934472 93934665 -48336779 - MER112 DNA MER1_type -15 245 42 225 257 108 0 chr9 93934901 93934975 -48336469 + MIR SINE MIR 90 149 -59 191 194 0 0 chr9 93934991 93935027 -48336417 + L2 LINE L2 3263 3298 -15 46078 33 0 1 chr9 93935070 93941229 -48330215 - L1PA3 LINE L1 0 6155 2 321 279 148 39 chr9 93941721 93941959 -48329485 + L1M4 LINE L1 686 897 -5318 2096 132 0 7 chr9 93941959 93942262 -48329182 + AluSq SINE Alu 1 301 -12 321 279 148 39 chr9 93942262 93942689 -48328755 + L1M4 LINE L1 897 1429 -4786 327 336 106 18 chr9 93942689 93942915 -48328529 + HAL1 LINE L1 1474 1719 -788 1991 136 0 10 chr9 93943161 93943462 -48327982 + AluSx SINE Alu 5 302 -10 373 253 167 6 chr9 93943724 93943898 -48327546 + MLT1J LTR MaLR 304 505 -6 226 262 16 0 chr9 93944691 93944752 -48326692 + L1M4 LINE L1 2422 2483 -3913 426 262 126 91 chr9 93944922 93945277 -48326167 + L1M4 LINE L1 2647 3021 -3194 2032 102 3 32 chr9 93945277 93945562 -48325882 + AluSc SINE Alu 1 277 -32 426 262 126 91 chr9 93945562 93945634 -48325810 + L1M4 LINE L1 3021 3089 -3126 279 271 67 33 chr9 93945662 93945889 -48325555 + MER46C DNA MER2_type 61 331 -7 569 282 81 42 chr9 93946012 93946658 -48324786 + L1M4 LINE L1 3936 4766 -1449 266 294 20 65 chr9 93946866 93947067 -48324377 + L1M4 LINE L1 5091 5282 -933 927 210 163 37 chr9 93947080 93947490 -48323954 - HsTC2 DNA Tc2 0 1898 1261 475 264 16 0 chr9 93947472 93947593 -48323851 - HsTC2 DNA Tc2 -1153 745 623 * 519 258 19 57 chr9 93947656 93947865 -48323579 - HsTC2 DNA Tc2 -1694 204 4 268 284 47 29 chr9 93947883 93948067 -48323377 + L1M4 LINE L1 5313 5499 -748 194 200 0 33 chr9 93948391 93948451 -48322993 + L2 LINE L2 3092 3149 -164 735 255 133 34 chr9 93948524 93949121 -48322323 + HAL1 LINE L1 94 782 -1725 729 132 28 104 chr9 93949123 93949305 -48322139 + L1MA9 LINE L1 6145 6312 0 4670 176 42 18 chr9 93949361 93950682 -48320762 + L1MB7 LINE L1 4826 6181 -3 287 170 0 0 chr9 93950694 93950747 -48320697 + L1MB7 LINE L1 6119 6171 -13 408 128 105 35 chr9 93950768 93950854 -48320590 - Charlie5 DNA MER1_type -499 2113 2022 494 160 21 0 chr9 93951313 93951407 -48320037 - Charlie5 DNA MER1_type -591 2021 1926 650 273 134 17 chr9 93951593 93951952 -48319492 + HAL1 LINE L1 1756 2156 -351 226 311 33 0 chr9 93952082 93952143 -48319301 + MER91A DNA MER1_type 122 184 -12 1945 147 30 67 chr9 93952219 93952311 -48319133 + MER7A DNA MER2_type 1 95 -2943 1834 173 0 7 chr9 93952311 93952612 -48318832 - AluJb SINE Alu -13 299 1 1945 147 30 67 chr9 93952612 93952880 -48318564 + MER7A DNA MER2_type 95 346 0 909 102 0 0 chr9 93952963 93953081 -48318363 + AluSq/x SINE Alu 1 118 -195 289 348 208 0 chr9 93953083 93953261 -48318183 + L1M4 LINE L1 362 576 -6592 3565 246 44 43 chr9 93953601 93954111 -48317333 + L1M4 LINE L1 1744 2252 -4915 2634 55 0 0 chr9 93954111 93954420 -48317024 + AluY SINE Alu 1 309 -2 3565 246 44 43 chr9 93954420 93955704 -48315740 + L1M4 LINE L1 2252 3220 -3947 180 338 14 0 chr9 93956301 93956375 -48315069 + MIR SINE MIR 21 95 -167 589 88 12 0 chr9 93958257 93958337 -48313107 + AluSc SINE Alu 4 84 -225 1012 123 27 64 chr9 93958337 93958988 -48312456 + SVA Other Other 464 674 -712 1826 92 0 0 chr9 93959096 93959323 -48312121 + AluSc SINE Alu 73 299 -10 692 274 79 33 chr9 93959785 93960241 -48311203 + L1M4 LINE L1 5509 5985 -1182 2376 76 0 0 chr9 93960301 93960592 -48310852 + AluY SINE Alu 1 291 -20 230 256 12 24 chr9 93960892 93960974 -48310470 + L1ME4a LINE L1 5954 6034 -87 2361 71 3 3 chr9 93962521 93962816 -48308628 + AluSp SINE Alu 1 295 -18 29 0 0 0 chr9 93965624 93965653 -48305791 + AT_rich Low_complexity Low_complexity 1 29 0 2323 103 3 0 chr9 93965656 93965958 -48305486 + AluSp SINE Alu 1 303 -10 324 197 15 15 chr9 93966684 93966750 -48304694 + L2 LINE L2 3194 3259 -54 260 175 63 32 chr9 93966752 93966815 -48304629 - MER3 DNA MER1_type 0 209 145 1720 146 29 7 chr9 93966822 93967097 -48304347 + AluJb SINE Alu 1 281 -31 198 0 0 0 chr9 93967101 93967123 -48304321 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2356 96 3 0 chr9 93967284 93967596 -48303848 + AluSp SINE Alu 1 313 0 2517 53 3 0 chr9 93968511 93968810 -48302634 - AluSp SINE Alu -13 300 1 183 253 53 13 chr9 93968880 93968955 -48302489 - MIR SINE MIR 0 262 185 516 293 84 41 chr9 93969128 93969705 -48301739 - L1M3 LINE L1 -355 5816 5213 2510 196 33 63 chr9 93970018 93970649 -48300795 + LTR9 LTR ERV1 1 612 0 303 268 86 91 chr9 93970749 93970947 -48300497 + LTR16C LTR ERVL 73 269 -222 384 208 156 51 chr9 93971117 93971358 -48300086 + MLT1F LTR MaLR 312 593 -2 795 222 0 18 chr9 93971406 93971577 -48299867 - MLT1C LTR MaLR 0 467 300 299 276 24 57 chr9 93971579 93971702 -48299742 - MLT1C LTR MaLR -386 119 1 5468 194 17 102 chr9 93971702 93973201 -48298243 - MLT1C-int LTR MaLR 0 1371 1 1264 217 84 49 chr9 93973201 93973614 -48297830 - MLT1C LTR MaLR 0 467 36 * 2355 179 110 22 chr9 93973609 93973688 -48297756 - MLT2B2 LTR ERVL -10 505 434 2303 93 0 7 chr9 93973688 93973988 -48297456 + AluSx SINE Alu 1 298 -14 2355 179 110 22 chr9 93973988 93974372 -48297072 - MLT2B2 LTR ERVL -81 434 1 397 256 26 8 chr9 93974430 93974547 -48296897 + LTR16C LTR ERVL 366 484 -7 240 275 14 0 chr9 93974553 93974622 -48296822 - L1M3 LINE L1 -1311 4835 4766 3718 171 28 32 chr9 93974623 93975340 -48296104 - L1MD1 LINE L1 -2 6240 5527 301 284 96 23 chr9 93975341 93975622 -48295822 + LTR38B LTR ERV1 267 555 -1 21 0 0 0 chr9 93976241 93976262 -48295182 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr9 93976559 93976582 -48294862 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 485 323 36 5 chr9 93976605 93976800 -48294644 - L2 LINE L2 -1326 1988 1788 1726 145 47 4 chr9 93977109 93977385 -48294059 + AluJo SINE Alu 25 312 0 2437 86 0 0 chr9 93977388 93977689 -48293755 + AluSq SINE Alu 1 301 -12 704 157 130 76 chr9 93977692 93977774 -48293670 + L1MC3 LINE L1 805 881 -6728 1402 171 15 90 chr9 93977774 93978107 -48293337 + AluJb SINE Alu 3 310 -2 704 157 130 76 chr9 93978107 93978340 -48293104 + L1MC3 LINE L1 881 7609 0 942 123 0 0 chr9 93978372 93978494 -48292950 + AluSc SINE Alu 1 122 -187 871 156 0 7 chr9 93978995 93979130 -48292314 + AluJo SINE Alu 1 134 -178 2110 123 152 31 chr9 93979314 93979355 -48292089 - MSTA LTR MaLR 0 428 393 2181 120 3 3 chr9 93979355 93979663 -48291781 + AluSx SINE Alu 1 308 -4 2110 123 152 31 chr9 93979663 93980003 -48291441 - MSTA LTR MaLR -35 393 1 1494 193 3 50 chr9 93980286 93980587 -48290857 - AluJo SINE Alu -16 296 10 6445 208 43 38 chr9 93980595 93981184 -48290260 - L1 LINE L1 -2458 5107 4522 1777 148 33 0 chr9 93981184 93981455 -48289989 - AluJb SINE Alu -32 280 1 6445 208 43 38 chr9 93981455 93981697 -48289747 - L1 LINE L1 -3043 4522 4283 2109 119 20 0 chr9 93981697 93981990 -48289454 - AluSx SINE Alu -13 299 1 6445 208 43 38 chr9 93981990 93983147 -48288297 - L1 LINE L1 -3282 4283 3133 1635 155 4 0 chr9 93983147 93983392 -48288052 - AluSx SINE Alu -27 285 40 6445 208 43 38 chr9 93983392 93983412 -48288032 - L1 LINE L1 -4432 3133 3115 2399 98 0 0 chr9 93983412 93983709 -48287735 - AluY SINE Alu -14 297 1 6445 208 43 38 chr9 93983709 93984572 -48286872 - L1 LINE L1 -4450 3115 2294 1908 133 0 32 chr9 93984572 93984857 -48286587 - AluSx SINE Alu -36 276 1 6445 208 43 38 chr9 93984857 93985226 -48286218 - L1 LINE L1 -5271 2294 1928 356 346 93 37 chr9 93985859 93986207 -48285237 - L2 LINE L2 -8 3264 2886 429 36 0 0 chr9 93986207 93986262 -48285182 + (TG)n Simple_repeat Simple_repeat 1 55 0 356 346 93 37 chr9 93986262 93986343 -48285101 - L2 LINE L2 -386 2886 2811 352 224 41 88 chr9 93993638 93993785 -48277659 + MIR3 SINE MIR 42 181 -27 340 233 180 37 chr9 93996810 93996999 -48274445 + MIR SINE MIR 47 262 0 470 220 0 0 chr9 93997917 93998017 -48273427 - U13 snRNA snRNA -4 100 1 309 162 0 0 chr9 93998408 93998476 -48272968 + (TG)n Simple_repeat Simple_repeat 2 69 0 786 243 39 0 chr9 93998586 93998767 -48272677 + MIR SINE MIR 67 254 -8 210 37 0 0 chr9 93998983 93999010 -48272434 + (T)n Simple_repeat Simple_repeat 1 27 0 240 295 0 53 chr9 93999291 93999386 -48272058 + MIR SINE MIR 40 129 -79 312 233 17 9 chr9 94000083 94000199 -48271245 + CT-rich Low_complexity Low_complexity 3 119 0 22 56 0 0 chr9 94000980 94001016 -48270428 + AT_rich Low_complexity Low_complexity 1 36 0 230 296 0 0 chr9 94001036 94001117 -48270327 + L1MA9 LINE L1 6194 6274 -38 260 362 67 24 chr9 94001388 94001598 -48269846 - MIR SINE MIR 0 262 44 2223 120 0 3 chr9 94001981 94002282 -48269162 + AluSg SINE Alu 1 300 -10 1155 110 37 0 chr9 94002386 94002549 -48268895 - AluY SINE Alu -6 305 137 21 0 0 0 chr9 94003897 94003918 -48267526 + AT_rich Low_complexity Low_complexity 1 21 0 2286 127 0 9 chr9 94005724 94006039 -48265405 - AluSx SINE Alu 0 312 1 189 79 79 16 chr9 94007421 94007484 -48263960 + (CA)n Simple_repeat Simple_repeat 1 67 0 2258 114 0 3 chr9 94007597 94007895 -48263549 - AluSq SINE Alu -16 297 1 2166 141 26 61 chr9 94009001 94009300 -48262144 - MER65A LTR ERV1 0 445 137 1868 154 0 0 chr9 94009300 94009580 -48261864 + AluJo SINE Alu 1 280 -32 294 29 0 0 chr9 94009580 94009615 -48261829 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2166 141 26 61 chr9 94009615 94009775 -48261669 - MER65A LTR ERV1 -306 139 1 4270 224 68 9 chr9 94010712 94011791 -48259653 - L1MC3 LINE L1 -1 7784 6643 183 382 15 0 chr9 94011811 94011879 -48259565 - L2 LINE L2 0 3272 3204 470 276 5 5 chr9 94013332 94013551 -48257893 + (CA)n Simple_repeat Simple_repeat 1 219 0 1221 249 108 3 chr9 94013664 94014025 -48257419 + MER70A LTR ERVL 5 403 -69 2471 226 57 106 chr9 94014074 94014934 -48256510 + L1MDa LINE L1 645 1435 -5105 441 0 0 0 chr9 94014934 94014983 -48256461 + (CA)n Simple_repeat Simple_repeat 2 50 0 2471 226 57 106 chr9 94014983 94015283 -48256161 + L1MDa LINE L1 1435 1748 -4792 1134 87 0 0 chr9 94015283 94015421 -48256023 + AluSq/x SINE Alu 1 138 -174 1130 221 15 4 chr9 94015422 94015684 -48255760 + L1MDa LINE L1 1798 2062 -4478 1843 157 8 40 chr9 94015686 94016037 -48255407 + MER4B LTR ERV1 267 606 -4 259 260 8 138 chr9 94016410 94016533 -48254911 + LTR41 LTR ERVL 506 612 -161 1158 194 11 28 chr9 94016574 94016857 -48254587 - L1MC3 LINE L1 0 7785 7508 434 182 0 107 chr9 94016860 94016981 -48254463 + MLT1E2 LTR MaLR 24 131 -495 315 333 65 17 chr9 94016986 94017217 -48254227 + L1M4 LINE L1 2 243 -6299 2122 221 90 41 chr9 94017538 94018392 -48253052 + L1M4 LINE L1 816 2049 -4516 936 225 125 84 chr9 94018392 94018761 -48252683 + MSTD LTR MaLR 1 384 -12 2048 182 76 12 chr9 94018765 94019604 -48251840 + L1M4c LINE L1 1511 2294 -4088 2091 148 13 0 chr9 94019604 94019909 -48251535 + AluSx SINE Alu 2 310 -2 2127 142 0 19 chr9 94019912 94020228 -48251216 + AluSx SINE Alu 1 310 -2 2048 182 76 12 chr9 94020228 94020255 -48251189 + L1M4c LINE L1 2295 2527 -3855 565 156 25 33 chr9 94020260 94020382 -48251062 + MER21A LTR ERV1 75 195 -736 342 106 0 0 chr9 94020379 94020426 -48251018 + Charlie3 DNA MER1_type 2660 2706 -4 * 1993 166 37 6 chr9 94020426 94020775 -48250669 + MER21A LTR ERV1 554 913 -18 295 272 27 82 chr9 94020801 94020830 -48250614 + L1M4c LINE L1 2534 2563 -3819 2498 88 0 3 chr9 94020830 94021138 -48250306 + AluSc SINE Alu 1 307 -2 295 272 27 82 chr9 94021138 94021255 -48250189 + L1M4c LINE L1 2563 2672 -3710 * 3234 207 66 71 chr9 94021237 94021432 -48250012 + L1M4c LINE L1 2899 3094 -3288 2367 94 3 0 chr9 94021432 94021729 -48249715 - AluSq SINE Alu -15 298 1 3234 207 66 71 chr9 94021729 94022052 -48249392 + L1M4c LINE L1 3094 3417 -2965 2330 92 3 25 chr9 94022052 94022369 -48249075 + AluY SINE Alu 1 310 -1 3234 207 66 71 chr9 94022369 94022383 -48249061 + L1M4c LINE L1 3417 3430 -2952 200 57 0 29 chr9 94022383 94022418 -48249026 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3234 207 66 71 chr9 94022418 94022437 -48249007 + L1M4c LINE L1 3430 3448 -2934 2143 116 32 29 chr9 94022437 94022748 -48248696 + AluSx SINE Alu 1 312 0 3234 207 66 71 chr9 94022748 94023485 -48247959 + L1M4c LINE L1 3448 4183 -2199 3081 225 27 34 chr9 94026347 94027396 -48244048 - L1MCa LINE L1 -5058 987 6 2279 85 0 42 chr9 94027743 94028050 -48243394 + AluY SINE Alu 1 294 -17 2312 99 7 0 chr9 94030921 94031214 -48240230 + AluSc SINE Alu 1 295 -14 183 156 0 0 chr9 94031214 94031246 -48240198 + GA-rich Low_complexity Low_complexity 1 32 0 199 249 22 133 chr9 94031712 94031893 -48239551 - L2 LINE L2 -728 2586 2426 2092 203 79 15 chr9 94032758 94033212 -48238232 + MLT1D LTR MaLR 22 504 -1 287 310 264 5 chr9 94033675 94033872 -48237572 - MIR SINE MIR -6 256 9 181 316 13 38 chr9 94034474 94034553 -48236891 + MIR SINE MIR 23 99 -109 1327 231 55 42 chr9 94034556 94034958 -48236486 - MLT1C LTR MaLR -2 465 59 316 263 161 0 chr9 94035193 94035311 -48236133 + MIR3 SINE MIR 7 143 -65 257 219 109 47 chr9 94035363 94035491 -48235953 + L1ME3A LINE L1 5254 5389 -773 553 286 141 18 chr9 94035505 94035788 -48235656 + L1ME3A LINE L1 5447 5764 -406 432 226 36 0 chr9 94035927 94036111 -48235333 + L1ME3A LINE L1 5950 6170 0 315 256 41 25 chr9 94036859 94036980 -48234464 + (TCCA)n Simple_repeat Simple_repeat 1 123 0 * 478 303 0 43 chr9 94036914 94037102 -48234342 + (CCCA)n Simple_repeat Simple_repeat 1 180 0 * 490 280 12 6 chr9 94036996 94037164 -48234280 + (TCCA)n Simple_repeat Simple_repeat 3 171 0 764 141 7 0 chr9 94037175 94037324 -48234120 + (TCCA)n Simple_repeat Simple_repeat 1 150 0 290 362 135 9 chr9 94037403 94037737 -48233707 - L2 LINE L2 -117 3196 2821 259 285 11 28 chr9 94037857 94038036 -48233408 + G-rich Low_complexity Low_complexity 2 177 0 263 135 0 0 chr9 94038045 94038082 -48233362 - Alu SINE Alu -265 37 1 430 324 112 0 chr9 94038087 94038257 -48233187 - L2 LINE L2 -534 2780 2592 2026 103 4 0 chr9 94038969 94039281 -48232163 + AluSx SINE Alu 12 324 0 249 206 0 44 chr9 94039509 94039577 -48231867 + C-rich Low_complexity Low_complexity 6 70 0 288 262 12 36 chr9 94040087 94040171 -48231273 - MIR3 SINE MIR 0 208 127 187 281 53 0 chr9 94041584 94041641 -48229803 - MIR SINE MIR -63 145 86 209 265 24 48 chr9 94041972 94042055 -48229389 + MIR3 SINE MIR 81 161 -47 261 226 16 0 chr9 94043762 94043824 -48227620 - L1ME2 LINE L1 -9 6155 6093 2416 219 41 27 chr9 94043832 94044153 -48227291 - L1MC3 LINE L1 -1619 6166 5851 2072 114 0 0 chr9 94044153 94044443 -48227001 + AluSx SINE Alu 1 290 -22 2416 219 41 27 chr9 94044443 94044780 -48226664 - L1MC3 LINE L1 -1934 5851 5499 1039 169 30 16 chr9 94044950 94045235 -48226209 + THE1C LTR MaLR 1 375 0 1539 139 4 38 chr9 94045334 94045601 -48225843 - AluJb SINE Alu -17 295 38 1450 135 104 171 chr9 94045601 94046081 -48225363 + MER83 LTR ERV1 1 448 0 2320 197 14 39 chr9 94046082 94046513 -48224931 + MER83-int LTR ERV1 13 432 -4448 464 300 23 3 chr9 94046533 94046718 -48224726 - L1ME2 LINE L1 -9 6155 5969 203 146 24 0 chr9 94046720 94046761 -48224683 + A-rich Low_complexity Low_complexity 3 44 0 2233 235 58 23 chr9 94046765 94046798 -48224646 - L1ME2 LINE L1 -184 5982 5952 2217 100 0 0 chr9 94046798 94047097 -48224347 - AluSg SINE Alu -11 299 1 2233 235 58 23 chr9 94047097 94047442 -48224002 - L1ME2 LINE L1 -214 5952 5621 1630 178 10 13 chr9 94047442 94047565 -48223879 + AluJo SINE Alu 1 123 -189 189 0 0 0 chr9 94047565 94047586 -48223858 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1630 178 10 13 chr9 94047586 94047760 -48223684 + AluJo SINE Alu 123 297 -15 2233 235 58 23 chr9 94047760 94048103 -48223341 - L1ME2 LINE L1 -545 5621 5233 470 249 129 42 chr9 94048104 94048454 -48222990 + L1MEc LINE L1 1120 1440 -4944 758 157 8 22 chr9 94048460 94048594 -48222850 + AluJb SINE Alu 2 133 -179 362 343 65 44 chr9 94048606 94048679 -48222765 + L1MEc LINE L1 1598 1668 -4895 1966 105 61 0 chr9 94048679 94048802 -48222642 + AluSx SINE Alu 1 115 -197 582 86 0 0 chr9 94048802 94048883 -48222561 + (CA)n Simple_repeat Simple_repeat 2 82 0 1966 105 61 0 chr9 94048883 94049053 -48222391 + AluSx SINE Alu 115 312 0 362 343 65 44 chr9 94049053 94049227 -48222217 + L1MEc LINE L1 1668 1850 -4713 9575 196 33 48 chr9 94049254 94050430 -48221014 + L1M1 LINE L1 12 1204 -6361 1689 147 0 32 chr9 94050430 94050715 -48220729 + AluSx SINE Alu 1 276 -36 9575 196 33 48 chr9 94050715 94051571 -48219873 + L1M1 LINE L1 1204 2071 -5494 2101 94 11 0 chr9 94051571 94051893 -48219551 + AluY SINE Alu 1 325 0 1472 178 0 0 chr9 94051895 94052142 -48219302 + AluSx SINE Alu 40 286 -26 9575 196 33 48 chr9 94052142 94053315 -48218129 + L1M1 LINE L1 2072 3261 -4304 2110 112 0 0 chr9 94053315 94053610 -48217834 + AluSx SINE Alu 16 310 -2 9575 196 33 48 chr9 94053610 94053878 -48217566 + L1M1 LINE L1 3261 3531 -4034 1690 144 33 0 chr9 94053878 94054149 -48217295 + AluJb SINE Alu 1 280 -32 9575 196 33 48 chr9 94054149 94054738 -48216706 + L1M1 LINE L1 3531 5107 -2458 1349 200 0 48 chr9 94054746 94055041 -48216403 + AluJo SINE Alu 10 290 -22 1971 119 150 42 chr9 94055307 94055651 -48215793 + MSTA LTR MaLR 1 393 -35 2076 125 3 3 chr9 94055651 94055963 -48215481 - AluSx SINE Alu 0 312 1 1971 119 150 42 chr9 94055963 94056004 -48215440 + MSTA LTR MaLR 393 428 0 845 148 0 7 chr9 94056188 94056323 -48215121 - AluJo SINE Alu -178 134 1 1279 141 10 10 chr9 94056898 94057097 -48214347 + MLT1B LTR MaLR 192 390 0 367 188 11 118 chr9 94057097 94057132 -48214312 - L1M4 LINE L1 -1624 4522 4485 2310 84 3 6 chr9 94057132 94057443 -48214001 - AluSg SINE Alu 0 310 1 367 188 11 118 chr9 94057443 94057565 -48213879 - L1M4 LINE L1 -1661 4485 4384 2150 90 7 0 chr9 94057565 94057867 -48213577 - AluSc SINE Alu 0 304 1 367 188 11 118 chr9 94057867 94057893 -48213551 - L1M4 LINE L1 -1762 4384 4357 289 236 171 0 chr9 94057899 94058022 -48213422 - L1MC3 LINE L1 0 7785 7642 * 1022 259 163 86 chr9 94058006 94058130 -48213314 - L1M3d LINE L1 -4881 1010 897 1531 151 3 86 chr9 94058130 94058467 -48212977 - AluJb SINE Alu -1 311 3 1022 259 163 86 chr9 94058467 94058556 -48212888 - L1M3d LINE L1 -4994 897 816 2192 98 3 0 chr9 94058556 94058853 -48212591 - AluSq SINE Alu -15 298 1 1681 156 46 3 chr9 94058854 94059137 -48212307 - AluJo SINE Alu -17 295 1 1022 259 163 86 chr9 94059137 94059815 -48211629 - L1M3d LINE L1 -5075 816 38 2246 95 3 0 chr9 94059815 94060111 -48211333 - AluSg SINE Alu -12 298 2 1022 259 163 86 chr9 94060111 94060153 -48211291 - L1M3d LINE L1 -5853 38 1 715 194 21 21 chr9 94060160 94060304 -48211140 - L1MC3 LINE L1 -924 6861 6718 1678 210 119 80 chr9 94060322 94060711 -48210733 - HAL1 LINE L1 -790 1717 1345 2239 78 0 3 chr9 94060711 94061005 -48210439 - AluY SINE Alu -18 293 1 1678 210 119 80 chr9 94061005 94061496 -48209948 - HAL1 LINE L1 -1162 1345 802 310 277 79 10 chr9 94061665 94061766 -48209678 + MER77 LTR ERV1 102 209 -396 1397 248 90 18 chr9 94061811 94062210 -48209234 + MER77 LTR ERV1 172 599 -6 471 258 180 9 chr9 94062349 94062566 -48208878 - HAL1 LINE L1 -2155 352 99 1208 289 44 16 chr9 94062581 94063031 -48208413 + LTR16B LTR ERVL 1 463 -1 229 200 125 25 chr9 94063823 94063903 -48207541 + MER77 LTR ERV1 53 140 -465 794 250 199 11 chr9 94064048 94064320 -48207124 + MER77 LTR ERV1 277 599 -6 382 273 212 17 chr9 94064502 94064795 -48206649 + L1MC4 LINE L1 6690 7039 -1003 723 252 95 27 chr9 94066226 94066549 -48204895 + MLT1C LTR MaLR 13 467 0 1694 118 95 0 chr9 94066649 94066911 -48204533 - AluSq SINE Alu -20 293 7 339 263 12 0 chr9 94067023 94067103 -48204341 + L1MCb LINE L1 1089 1169 -4876 1022 90 0 0 chr9 94067106 94067239 -48204205 + AluSq SINE Alu 3 135 -178 43785 31 23 1 chr9 94067239 94073287 -48198157 + L1PA2 LINE L1 1 6181 0 1105 118 0 12 chr9 94073290 94073487 -48197957 + AluSq SINE Alu 126 320 0 1579 167 11 4 chr9 94073514 94073830 -48197614 + AluJo SINE Alu 1 318 0 391 191 45 18 chr9 94073862 94073972 -48197472 + L1MCb LINE L1 1554 1666 -4898 * 466 243 45 69 chr9 94073968 94074215 -48197229 + L1MEd LINE L1 1011 1251 -4868 2073 87 3 72 chr9 94074866 94075201 -48196243 + AluSx SINE Alu 1 312 0 1348 269 43 45 chr9 94076827 94077358 -48194086 + ERVL LTR ERVL 3472 4001 -1763 1673 183 17 0 chr9 94077386 94077687 -48193757 + AluJo SINE Alu 1 306 -6 1671 287 7 7 chr9 94077714 94078157 -48193287 + ERVL LTR ERVL 4116 4558 -1206 332 217 0 14 chr9 94078432 94078501 -48192943 + Ricksha DNA DNA 278 345 -1701 479 313 144 34 chr9 94078501 94078827 -48192617 + MLT2F LTR ERVL 1 362 -301 603 276 54 9 chr9 94079068 94079289 -48192155 - L1ME LINE L1 -582 5582 5352 1891 194 27 56 chr9 94079337 94079635 -48191809 - MLT1C LTR MaLR -1 466 185 7444 43 4 30 chr9 94079635 94080974 -48190470 - SVA Other Other -799 1386 239 1891 194 27 56 chr9 94080974 94081154 -48190290 - MLT1C LTR MaLR -282 185 1 1515 188 7 13 chr9 94081260 94081558 -48189886 + AluJo SINE Alu 1 296 -16 211 111 22 22 chr9 94082140 94082185 -48189259 + (TA)n Simple_repeat Simple_repeat 1 45 0 279 0 0 0 chr9 94082189 94082220 -48189224 + (CA)n Simple_repeat Simple_repeat 2 32 0 4235 205 78 24 chr9 94082482 94082934 -48188510 - L1MD2 LINE L1 -21 6732 6306 2032 112 3 7 chr9 94082934 94083243 -48188201 - AluSq SINE Alu 0 308 1 4235 205 78 24 chr9 94083243 94083987 -48187457 - L1MD2 LINE L1 -447 6306 5471 889 208 72 76 chr9 94084011 94084237 -48187207 + MER31-int LTR ERV1 1020 1245 -5086 2157 97 3 47 chr9 94084237 94084558 -48186886 - AluSp SINE Alu -6 307 1 889 208 72 76 chr9 94084558 94084753 -48186691 + MER31-int LTR ERV1 1245 2979 -3352 873 231 53 30 chr9 94084782 94085081 -48186363 + MER31-int LTR ERV1 1454 1759 -3177 309 219 47 94 chr9 94085275 94085467 -48185977 + MER31-int LTR ERV1 2183 2365 -2571 22 35 0 0 chr9 94085486 94085515 -48185929 + AT_rich Low_complexity Low_complexity 1 29 0 713 149 0 19 chr9 94085515 94085622 -48185822 + FLAM_C SINE Alu 21 125 -18 2432 202 108 40 chr9 94085649 94086391 -48185053 + MER31-int LTR ERV1 2608 3399 -1537 288 191 63 0 chr9 94086391 94086454 -48184990 - MSTC LTR MaLR -361 67 1 787 244 30 41 chr9 94086466 94086602 -48184842 - L1MD2 LINE L1 -1592 4948 4815 1880 156 3 0 chr9 94086602 94086891 -48184553 - AluJb SINE Alu -22 290 1 787 244 30 41 chr9 94086891 94087020 -48184424 - L1MD2 LINE L1 -1725 4815 4686 1960 105 45 3 chr9 94087677 94087963 -48183481 - AluSq SINE Alu -15 298 1 5239 229 112 26 chr9 94088005 94088344 -48183100 - L1MD2 LINE L1 -1939 4601 4293 2406 74 0 29 chr9 94088344 94088653 -48182791 - AluSg SINE Alu -8 302 3 5239 229 112 26 chr9 94088653 94088803 -48182641 - L1MD2 LINE L1 -2247 4293 4157 2269 106 0 6 chr9 94088803 94089114 -48182330 - AluSq SINE Alu -4 309 1 5239 229 112 26 chr9 94089114 94089395 -48182049 - L1MD2 LINE L1 -2383 4157 3902 1693 138 0 15 chr9 94089395 94089664 -48181780 + AluSx SINE Alu 1 265 -47 5239 229 112 26 chr9 94089664 94090747 -48180697 - L1MD2 LINE L1 -2638 3902 2914 2161 108 7 0 chr9 94090747 94091033 -48180411 - AluSx SINE Alu -23 289 2 5239 229 112 26 chr9 94091033 94091074 -48180370 - L1MD2 LINE L1 -3626 2914 2878 2349 158 58 22 chr9 94091074 94091485 -48179959 + MSTB LTR MaLR 1 426 0 5239 229 112 26 chr9 94091485 94091666 -48179778 - L1MD2 LINE L1 -3662 2878 2254 467 194 212 35 chr9 94091694 94091869 -48179575 - MER6 DNA MER2_type 0 865 -65 2167 194 87 6 chr9 94091880 94092384 -48179060 - L1MD2 LINE L1 -4358 2182 1638 3018 202 49 10 chr9 94092422 94093065 -48178379 - L1MD2 LINE L1 -5773 767 18 2086 133 20 0 chr9 94093089 94093390 -48178054 - AluSx SINE Alu -5 307 1 639 229 8 23 chr9 94093391 94093522 -48177922 - AluJo/FLAM SINE Alu -182 130 2 2163 111 14 0 chr9 94094183 94094472 -48176972 - AluSx SINE Alu -19 293 1 2198 101 0 33 chr9 94098599 94098906 -48172538 - AluY SINE Alu -14 297 1 616 221 233 0 chr9 94099467 94099630 -48171814 - AluJo SINE Alu -102 210 10 2046 135 7 3 chr9 94099746 94100050 -48171394 + AluSx SINE Alu 6 310 -2 279 136 0 0 chr9 94100062 94100121 -48171323 + (CAGGA)n Simple_repeat Simple_repeat 2 60 0 2060 195 49 16 chr9 94100413 94100865 -48170579 + L1MB7 LINE L1 5654 6120 -64 1641 170 69 0 chr9 94101221 94101509 -48169935 + AluJb SINE Alu 1 308 -4 298 226 206 14 chr9 94101812 94101958 -48169486 + L1ME LINE L1 5616 5789 -332 2058 116 27 10 chr9 94102100 94102393 -48169051 + AluSx SINE Alu 1 298 -14 223 290 103 0 chr9 94103969 94104076 -48167368 + MIR SINE MIR 118 235 -27 232 244 0 0 chr9 94105183 94105228 -48166216 - L1ME4a LINE L1 -103 6018 5974 2189 132 10 0 chr9 94105315 94105625 -48165819 + AluSq SINE Alu 1 313 0 200 256 0 0 chr9 94106577 94106616 -48164828 - MER91 DNA MER1_type -24 116 78 968 227 32 19 chr9 94106732 94106948 -48164496 + MER20 DNA MER1_type 1 219 0 303 282 169 66 chr9 94108497 94108614 -48162830 - MIR SINE MIR 0 262 158 1599 141 12 0 chr9 94108614 94108863 -48162581 + L1MA3 LINE L1 6054 6305 0 303 282 169 66 chr9 94108863 94108958 -48162486 - MIR SINE MIR -104 158 28 2018 105 26 52 chr9 94109014 94109320 -48162124 - AluSq SINE Alu -15 298 1 181 377 13 0 chr9 94110038 94110115 -48161329 + L2 LINE L2 2944 3021 -251 228 221 59 0 chr9 94110924 94110992 -48160452 + L2 LINE L2 3009 3080 -233 1878 138 21 10 chr9 94111141 94111432 -48160012 + AluSq SINE Alu 1 294 -19 497 183 87 0 chr9 94112245 94112349 -48159095 + MER20 DNA MER1_type 99 211 -8 219 303 79 22 chr9 94112436 94112525 -48158919 + MIR3 SINE MIR 114 207 -1 2210 108 3 0 chr9 94113204 94113499 -48157945 + AluSx SINE Alu 1 296 -16 2771 231 54 8 chr9 94113615 94113857 -48157587 + L1MD2 LINE L1 5644 5873 -486 2185 117 3 3 chr9 94113857 94114157 -48157287 + AluSx SINE Alu 1 300 -12 2771 231 54 8 chr9 94114157 94114580 -48156864 + L1MD2 LINE L1 5873 6340 -19 1962 137 7 3 chr9 94114588 94114880 -48156564 - AluSx SINE Alu -19 293 1 24 32 0 0 chr9 94114883 94114914 -48156530 + AT_rich Low_complexity Low_complexity 1 31 0 716 290 45 0 chr9 94114916 94115140 -48156304 + MIR SINE MIR 21 254 -8 28 61 0 0 chr9 94115208 94115257 -48156187 + AT_rich Low_complexity Low_complexity 1 49 0 294 333 77 19 chr9 94115359 94115566 -48155878 + MIR SINE MIR 23 241 -21 2234 117 0 7 chr9 94116883 94117192 -48154252 + AluSx SINE Alu 1 307 -5 252 273 117 13 chr9 94117623 94117700 -48153744 + L2 LINE L2 3168 3252 -20 1818 166 0 7 chr9 94118484 94118786 -48152658 - AluJb SINE Alu -9 303 4 1857 156 57 21 chr9 94119146 94119347 -48152097 - MER7A DNA MER2_type -2693 345 128 2046 183 37 37 chr9 94119347 94119779 -48151665 + MSTB1 LTR MaLR 1 432 0 1857 156 57 21 chr9 94119779 94119911 -48151533 - MER7A DNA MER2_type -2910 128 2 902 171 28 39 chr9 94120308 94120489 -48150955 - AluJo SINE Alu -133 179 1 245 149 43 0 chr9 94120489 94120536 -48150908 + MER6 DNA MER2_type 814 862 -3 1977 157 3 6 chr9 94123343 94123655 -48147789 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr9 94123908 94123930 -48147514 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 94124012 94124033 -48147411 + AT_rich Low_complexity Low_complexity 1 21 0 362 66 98 0 chr9 94124769 94124830 -48146614 - MER41A LTR ERV1 -88 466 400 491 262 156 0 chr9 94124902 94125024 -48146420 - MIR SINE MIR -116 146 6 2285 109 0 3 chr9 94125398 94125711 -48145733 + AluSx SINE Alu 1 312 0 1025 62 0 8 chr9 94125852 94125980 -48145464 + AluSg/x SINE Alu 173 299 -13 280 265 87 63 chr9 94126143 94126430 -48145014 + L1MC5 LINE L1 7624 7917 -44 633 167 0 0 chr9 94126434 94126536 -48144908 + L1PB4 LINE L1 6054 6155 -1 285 303 84 39 chr9 94126662 94126817 -48144627 - MIR SINE MIR -100 162 1 315 282 58 0 chr9 94126959 94127062 -48144382 + L1ME1 LINE L1 6033 6141 -25 289 263 61 35 chr9 94128116 94128230 -48143214 - MIR SINE MIR -114 148 32 1256 104 104 10 chr9 94130020 94130222 -48141222 + AluSg SINE Alu 27 247 -63 1485 137 18 0 chr9 94130296 94130522 -48140922 + AluJo SINE Alu 71 300 -12 468 282 84 72 chr9 94131475 94131879 -48139565 - L1MC4a LINE L1 -125 5996 5588 2901 185 51 3 chr9 94132496 94133068 -48138376 - L1MB3 LINE L1 -31 6152 5554 23 54 0 0 chr9 94133882 94133919 -48137525 + AT_rich Low_complexity Low_complexity 1 37 0 2081 134 3 0 chr9 94133966 94134264 -48137180 - AluSx SINE Alu -13 299 1 1313 233 130 35 chr9 94134635 94135128 -48136316 + L1MC4 LINE L1 7501 8040 -2 1278 134 6 0 chr9 94135128 94135307 -48136137 - AluSg/x SINE Alu -7 305 126 1695 201 3 0 chr9 94135325 94135619 -48135825 + AluJb SINE Alu 7 301 -11 327 164 0 0 chr9 94135630 94135691 -48135753 + (TA)n Simple_repeat Simple_repeat 2 62 0 1458 184 141 0 chr9 94135691 94135947 -48135497 - AluSg SINE Alu -8 292 1 403 234 13 0 chr9 94136005 94136082 -48135362 + MER58B DNA MER1_type 2 79 -262 237 213 117 64 chr9 94136058 94136152 -48135292 + MER58B DNA MER1_type 241 339 -2 * 2084 109 10 16 chr9 94136191 94136494 -48134950 + AluSx SINE Alu 3 303 -9 35 0 0 0 chr9 94136600 94136635 -48134809 + AT_rich Low_complexity Low_complexity 1 35 0 1772 176 13 0 chr9 94136729 94137030 -48134414 + AluJb SINE Alu 1 305 -7 424 255 75 43 chr9 94137100 94137288 -48134156 + L1MC5 LINE L1 7706 7899 -62 1767 127 58 0 chr9 94137335 94137595 -48133849 + AluSg1 SINE Alu 1 275 -34 180 0 0 0 chr9 94137598 94137618 -48133826 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 342 267 151 14 chr9 94138764 94138910 -48132534 + L1MC4a LINE L1 5721 5886 -1922 2139 124 3 0 chr9 94138916 94139215 -48132229 + AluSx SINE Alu 1 300 -12 1922 212 164 5 chr9 94139691 94140318 -48131126 + L1MC4a LINE L1 7082 7808 0 22 0 0 0 chr9 94140518 94140540 -48130904 + AT_rich Low_complexity Low_complexity 1 22 0 295 280 73 2 chr9 94141306 94141425 -48130019 + MIR SINE MIR 44 169 -62 2223 103 7 0 chr9 94141757 94142058 -48129386 + AluSx SINE Alu 1 303 -9 4023 186 64 20 chr9 94142359 94143520 -48127924 - L1MB7 LINE L1 -5 6179 4958 312 296 209 0 chr9 94144635 94144750 -48126694 + MER5A DNA MER1_type 49 187 -2 1687 161 0 68 chr9 94144847 94145169 -48126275 - AluJb SINE Alu -12 300 1 215 309 34 67 chr9 94145693 94145842 -48125602 + L2 LINE L2 2384 2527 -787 366 243 84 12 chr9 94145998 94146164 -48125280 + L1ME LINE L1 5645 5823 -298 1844 159 0 7 chr9 94147126 94147427 -48124017 - AluJo SINE Alu -13 299 1 3255 117 36 0 chr9 94148015 94148510 -48122934 - LTR10D LTR ERV1 0 513 1 400 200 45 0 chr9 94148644 94148754 -48122690 + HAL1 LINE L1 2284 2398 -109 594 235 91 27 chr9 94148822 94149220 -48122224 + MLT1G LTR MaLR 11 584 -11 2183 119 7 10 chr9 94149539 94149841 -48121603 - AluSg SINE Alu -9 301 1 2274 103 7 13 chr9 94152300 94152610 -48118834 + AluSx SINE Alu 3 310 -2 498 83 56 0 chr9 94153589 94153661 -48117783 + Alu SINE Alu 222 297 -13 290 338 0 0 chr9 94154960 94155040 -48116404 + MIR3 SINE MIR 93 172 -36 789 191 13 6 chr9 94155480 94155637 -48115807 + MLT1F1 LTR MaLR 1 158 -409 729 298 11 36 chr9 94155662 94156025 -48115419 + MLT1D-int LTR MaLR 248 601 -770 1198 239 48 3 chr9 94156100 94156414 -48115030 + MER58B DNA MER1_type 2 329 -12 954 175 6 12 chr9 94156490 94156656 -48114788 + FRAM SINE Alu 2 166 0 455 264 50 98 chr9 94157004 94157383 -48114061 + MLT1D-int LTR MaLR 964 1324 -47 896 213 50 16 chr9 94157476 94157734 -48113710 - L1MD3 LINE L1 0 7995 7729 1256 227 113 28 chr9 94157866 94158325 -48113119 + MLT1D LTR MaLR 8 505 0 2313 96 0 0 chr9 94158833 94159124 -48112320 - AluSx SINE Alu -21 291 1 321 271 21 36 chr9 94159192 94159332 -48112112 + L1MC5 LINE L1 7721 7858 -103 310 202 48 0 chr9 94159537 94159621 -48111823 - L1ME LINE L1 -467 5654 5567 1620 167 98 4 chr9 94160936 94161211 -48110233 + AluJo SINE Alu 1 301 -11 245 196 155 10 chr9 94161513 94161610 -48109834 - L2 LINE L2 -1265 2049 1939 233 184 0 0 chr9 94161908 94161946 -48109498 + Alu SINE Alu 1 38 -263 262 227 45 15 chr9 94162908 94162974 -48108470 + MIR3 SINE MIR 123 190 -18 5705 113 19 24 chr9 94164136 94165003 -48106441 + L1PA15 LINE L1 5098 5968 -197 1946 152 26 0 chr9 94165003 94165306 -48106138 + AluJb SINE Alu 1 311 -1 5705 113 19 24 chr9 94165306 94165375 -48106069 + L1PA15 LINE L1 5968 6036 -129 2501 93 0 0 chr9 94165375 94165688 -48105756 + AluSq SINE Alu 1 313 0 5705 113 19 24 chr9 94165688 94165826 -48105618 + L1PA15 LINE L1 6036 6165 0 279 278 153 17 chr9 94165847 94166023 -48105421 + L2 LINE L2 2329 2528 -786 473 145 26 0 chr9 94166158 94166234 -48105210 - MER58 DNA MER1_type 0 2420 2343 346 272 25 0 chr9 94166242 94166323 -48105121 - MER58 DNA MER1_type -2337 83 1 196 304 114 38 chr9 94169047 94169126 -48102318 + MIR3 SINE MIR 87 171 -37 913 90 7 35 chr9 94169503 94169648 -48101796 + FLAM_C SINE Alu 1 141 -2 1533 180 17 34 chr9 94169792 94170086 -48101358 - AluJb SINE Alu -19 293 5 317 243 193 0 chr9 94170412 94170552 -48100892 + LTR33A LTR ERVL 356 522 -1 2367 98 0 7 chr9 94170583 94170889 -48100555 + AluSc SINE Alu 1 304 -5 208 298 105 65 chr9 94171747 94171871 -48099573 + MIR SINE MIR 21 149 -59 217 298 50 57 chr9 94172981 94173122 -48098322 + L2 LINE L2 2570 2709 -605 2448 89 0 3 chr9 94173423 94173737 -48097707 - AluSq SINE Alu 0 313 1 321 316 140 26 chr9 94173963 94174191 -48097253 + L1ME LINE L1 5577 5830 -332 456 255 32 32 chr9 94175166 94175195 -48096249 - MIR SINE MIR -30 232 204 1861 123 23 0 chr9 94175195 94175456 -48095988 - AluSx SINE Alu -14 298 32 456 255 32 32 chr9 94175456 94175583 -48095861 - MIR SINE MIR -57 205 76 207 0 0 0 chr9 94176339 94176362 -48095082 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 311 258 145 8 chr9 94177683 94177807 -48093637 - MIR SINE MIR -116 146 6 342 319 138 59 chr9 94178637 94178891 -48092553 - L1M2 LINE L1 -5896 953 680 309 246 77 33 chr9 94179213 94179396 -48092048 - MER113 DNA MER1_type? -248 273 83 661 253 13 0 chr9 94179417 94179571 -48091873 - MIR SINE MIR -87 175 20 278 226 267 75 chr9 94179888 94180034 -48091410 + MER5A DNA MER1_type 13 186 -3 4771 143 58 19 chr9 94180086 94180971 -48090473 - MER49 LTR ERV1 0 923 5 722 236 84 5 chr9 94181224 94181415 -48090029 + MIR SINE MIR 30 235 -27 934 162 38 5 chr9 94181668 94181853 -48089591 - L1MB3 LINE L1 0 6183 5993 2231 87 13 3 chr9 94182013 94182312 -48089132 - AluSq SINE Alu -11 302 1 1246 146 112 68 chr9 94182353 94182554 -48088890 - AluJb SINE Alu 0 312 92 189 0 0 0 chr9 94182554 94182575 -48088869 + (TG)n Simple_repeat Simple_repeat 2 22 0 1246 146 112 68 chr9 94182575 94182668 -48088776 - AluJb SINE Alu -220 92 5 220 344 23 38 chr9 94182992 94183123 -48088321 - L2 LINE L2 -826 2488 2360 2273 112 3 3 chr9 94183507 94183820 -48087624 - AluSq SINE Alu 0 313 1 2431 77 0 6 chr9 94183998 94184310 -48087134 - AluY SINE Alu -1 310 1 1483 191 54 17 chr9 94184510 94184804 -48086640 + AluJo SINE Alu 1 305 -7 31 0 0 0 chr9 94184843 94184874 -48086570 + AT_rich Low_complexity Low_complexity 1 31 0 1989 146 7 0 chr9 94185358 94185653 -48085791 + AluSx SINE Alu 1 297 -15 209 186 47 0 chr9 94185689 94185732 -48085712 + T-rich Low_complexity Low_complexity 5 49 0 368 192 0 0 chr9 94186556 94186629 -48084815 - AluJ/FRAM SINE Alu 0 302 230 347 257 29 22 chr9 94186722 94186858 -48084586 - MARNA DNA Mariner -74 512 376 2131 121 0 3 chr9 94186952 94187249 -48084195 - AluSc SINE Alu -13 296 1 23 0 0 0 chr9 94187257 94187280 -48084164 + AT_rich Low_complexity Low_complexity 1 23 0 2125 137 7 0 chr9 94187428 94187735 -48083709 + AluSx SINE Alu 1 309 -3 1528 112 128 8 chr9 94187735 94188019 -48083425 + AluSg1 SINE Alu 1 314 0 218 353 24 0 chr9 94188156 94188241 -48083203 + MIR3 SINE MIR 92 178 -30 2166 202 22 18 chr9 94188291 94188836 -48082608 - L1M4 LINE L1 -1070 5076 4530 869 193 93 19 chr9 94188861 94189120 -48082324 - L1MC4 LINE L1 -375 7667 7390 764 236 30 76 chr9 94189133 94189434 -48082010 - HAL1 LINE L1 -2133 374 88 478 234 10 83 chr9 94189467 94189672 -48081772 + L1ME3 LINE L1 5965 6154 -8 2361 100 0 0 chr9 94189866 94190167 -48081277 + AluSq SINE Alu 1 301 -12 672 167 45 117 chr9 94190794 94190860 -48080584 - MLT1J LTR MaLR -2 565 496 1905 159 3 3 chr9 94190860 94191156 -48080288 + AluJo SINE Alu 1 296 -16 672 167 45 117 chr9 94191156 94191168 -48080276 - MLT1J LTR MaLR -71 496 485 1831 165 11 34 chr9 94191168 94191519 -48079925 + MER2 DNA MER2_type 1 343 -1 672 167 45 117 chr9 94191519 94191661 -48079783 - MLT1J LTR MaLR -82 485 360 8736 50 4 2 chr9 94193343 94194412 -48077032 + MER11C LTR ERVK 1 1071 0 709 241 157 8 chr9 94194931 94195167 -48076277 - MLT1J LTR MaLR -237 274 4 335 266 64 0 chr9 94195654 94195772 -48075672 - L1ME LINE L1 -497 5673 5544 289 298 58 47 chr9 94196006 94196177 -48075267 - MIR3 SINE MIR -13 195 23 1706 173 0 53 chr9 94196494 94196817 -48074627 + AluJo SINE Alu 1 306 -6 205 171 0 0 chr9 94197201 94197236 -48074208 + T-rich Low_complexity Low_complexity 3 37 0 414 151 0 0 chr9 94197240 94197313 -48074131 - L1MB8 LINE L1 -5 6173 6101 2160 84 3 3 chr9 94197357 94197678 -48073766 - AluSx SINE Alu 0 321 1 550 107 0 0 chr9 94197717 94197801 -48073643 + AluSc SINE Alu 1 84 -225 2408 59 7 7 chr9 94197801 94198106 -48073338 + AluY SINE Alu 2 306 -5 1716 78 0 30 chr9 94198107 94198338 -48073106 + AluSc SINE Alu 73 296 -13 316 176 95 27 chr9 94198338 94198412 -48073032 - L1ME LINE L1 -678 5443 5365 336 278 94 58 chr9 94198780 94198971 -48072473 - L2 LINE L2 0 3313 3116 667 120 0 56 chr9 94199017 94199125 -48072319 - AluJo SINE Alu -178 134 33 842 345 108 23 chr9 94199214 94200080 -48071364 - L2 LINE L2 -357 2957 2018 197 321 196 36 chr9 94200259 94200371 -48071073 + MIR3 SINE MIR 2 131 -77 973 238 21 91 chr9 94200535 94200750 -48070694 - L1MCa LINE L1 -4360 2247 2018 1386 152 22 114 chr9 94200750 94201089 -48070355 - AluYb8 SINE Alu 0 310 1 973 238 21 91 chr9 94201089 94201224 -48070220 - L1MCa LINE L1 -4589 2018 1937 2332 101 3 0 chr9 94201224 94201522 -48069922 - AluSq SINE Alu -14 299 1 973 238 21 91 chr9 94201522 94201653 -48069791 - L1MCa LINE L1 -4670 1937 1798 310 309 57 34 chr9 94201676 94201851 -48069593 - L1MCa LINE L1 -4834 1592 1414 457 288 52 15 chr9 94201853 94202124 -48069320 - L1MCa LINE L1 -4947 1479 1039 511 150 7 1 chr9 94202126 94202224 -48069220 - L1MC/D LINE L1 -1983 5802 5700 2330 102 0 0 chr9 94202229 94202532 -48068912 - AluSc SINE Alu -6 303 1 285 280 25 25 chr9 94202532 94202689 -48068755 + (TA)n Simple_repeat Simple_repeat 1 157 0 925 188 22 0 chr9 94202689 94202870 -48068574 - L1MC/D LINE L1 -461 5705 5521 471 141 28 0 chr9 94203678 94203749 -48067695 - FLAM_C SINE Alu -38 105 33 1234 154 54 108 chr9 94203889 94204039 -48067405 - L1MB3 LINE L1 -1 6182 6025 2135 95 46 0 chr9 94204039 94204324 -48067120 + AluSg SINE Alu 1 298 -12 1234 154 54 108 chr9 94204324 94204470 -48066974 - L1MB3 LINE L1 -158 6025 5909 2037 116 25 3 chr9 94204470 94204755 -48066689 - AluSx SINE Alu -21 291 1 1234 154 54 108 chr9 94204755 94204847 -48066597 - L1MB3 LINE L1 -274 5909 5814 1944 150 7 0 chr9 94204918 94205225 -48066219 + AluSx SINE Alu 1 309 -3 351 0 0 0 chr9 94205298 94205337 -48066107 + (TG)n Simple_repeat Simple_repeat 2 40 0 290 26 26 0 chr9 94205336 94205375 -48066069 + (TA)n Simple_repeat Simple_repeat 1 40 0 * 2716 89 18 5 chr9 94205377 94205759 -48065685 - MLT2A1 LTR ERVL -57 387 1 11744 67 26 3 chr9 94205759 94207348 -48064096 - HERVL-A1 LTR ERVL 0 5654 4030 697 148 0 0 chr9 94207376 94207484 -48063960 - FLAM_C SINE Alu -29 114 7 4454 68 9 13 chr9 94207564 94208200 -48063244 - MER11A LTR ERVK 0 1266 633 3407 43 20 2 chr9 94209150 94209740 -48061704 - MER11A LTR ERVK -763 503 1 7606 168 40 69 chr9 94209741 94210292 -48061152 - L1M4c LINE L1 -4301 2083 1518 1976 116 11 11 chr9 94210292 94210610 -48060834 - AluSp SINE Alu 0 318 1 7606 168 40 69 chr9 94210610 94211060 -48060384 - L1M4c LINE L1 -4866 1518 1056 2136 130 7 3 chr9 94211060 94211359 -48060085 - AluSx SINE Alu -12 300 1 7606 168 40 69 chr9 94211359 94211752 -48059692 - L1M4c LINE L1 -5328 1056 653 2357 109 3 0 chr9 94211752 94212064 -48059380 - AluSp SINE Alu 0 313 1 7606 168 40 69 chr9 94212064 94212200 -48059244 - L1M4c LINE L1 -5731 653 515 191 35 0 35 chr9 94212200 94212229 -48059215 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 7606 168 40 69 chr9 94212229 94212926 -48058518 - L1M4c LINE L1 -5869 515 16 419 306 51 30 chr9 94212926 94213161 -48058283 - L1MEc LINE L1 -4251 2145 1906 1113 195 20 10 chr9 94213182 94213382 -48058062 + AluJo SINE Alu 85 286 -26 291 297 0 9 chr9 94213400 94213511 -48057933 - L1MEc LINE L1 -4358 1857 1748 2376 74 6 10 chr9 94213511 94213822 -48057622 - AluY SINE Alu -1 310 1 370 289 5 69 chr9 94213867 94213931 -48057513 - L1MC4 LINE L1 -151 7891 7824 2031 135 0 0 chr9 94213931 94214256 -48057188 - AluSx SINE Alu 0 325 1 513 0 0 0 chr9 94214256 94214313 -48057131 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 2234 95 0 7 chr9 94214313 94214597 -48056847 - AluSx SINE Alu -30 282 1 370 289 5 69 chr9 94214597 94214747 -48056697 - L1MC4 LINE L1 -215 7827 7688 589 134 0 0 chr9 94214758 94214840 -48056604 + AluSg/x SINE Alu 199 280 -32 252 86 0 0 chr9 94214840 94214875 -48056569 + (TAAAA)n Simple_repeat Simple_repeat 5 39 0 421 155 29 48 chr9 94214876 94214979 -48056465 - L1MC4 LINE L1 -388 7654 7554 971 195 75 30 chr9 94214990 94215190 -48056254 + AluJo SINE Alu 84 292 -20 1713 270 78 42 chr9 94215242 94216042 -48055402 - L1MC4 LINE L1 -507 7535 6765 198 103 0 0 chr9 94216042 94216071 -48055373 + (CA)n Simple_repeat Simple_repeat 2 30 0 1713 270 78 42 chr9 94216071 94216120 -48055324 - L1MC4 LINE L1 -1277 6765 6719 1962 152 30 0 chr9 94216120 94216456 -48054988 + MER7A DNA MER2_type 2 345 -1 1713 270 78 42 chr9 94216456 94216647 -48054797 - L1MC4 LINE L1 -1323 6719 6457 2025 163 0 3 chr9 94216652 94216965 -48054479 - AluJb SINE Alu 0 312 1 845 136 0 8 chr9 94217023 94217148 -48054296 - FLAM_C SINE Alu -9 124 1 406 250 64 104 chr9 94217154 94217374 -48054070 - L1MEc LINE L1 -4704 1692 1482 302 210 80 0 chr9 94217380 94217480 -48053964 + L1ME1 LINE L1 6058 6165 -1 266 307 141 12 chr9 94217483 94217646 -48053798 - L2 LINE L2 -17 3296 3113 219 231 46 31 chr9 94217687 94217752 -48053692 + L2 LINE L2 3244 3309 -4 677 280 69 46 chr9 94217825 94218129 -48053315 - L2 LINE L2 -1 3312 3002 2230 122 0 0 chr9 94218222 94218526 -48052918 - AluSx SINE Alu -8 304 1 182 277 99 79 chr9 94218642 94218715 -48052729 + MIR3 SINE MIR 92 169 -39 2442 70 7 0 chr9 94218715 94219017 -48052427 + AluY SINE Alu 2 305 -6 182 277 99 79 chr9 94219017 94219044 -48052400 + MIR3 SINE MIR 169 194 -14 1034 138 95 0 chr9 94219669 94219858 -48051586 + Tigger4(Zombi) DNA MER2_type 1 207 -2524 * 3769 108 89 60 chr9 94219857 94219971 -48051473 + Tigger4(Zombi) DNA MER2_type 1958 2067 -664 2255 125 0 0 chr9 94219971 94220282 -48051162 - AluSx SINE Alu -1 311 1 3769 108 89 60 chr9 94220282 94220425 -48051019 + Tigger4(Zombi) DNA MER2_type 2067 2204 -527 2193 121 7 0 chr9 94220425 94220731 -48050713 - AluSq SINE Alu -5 308 1 3769 108 89 60 chr9 94220731 94221224 -48050220 + Tigger4(Zombi) DNA MER2_type 2204 2731 0 1432 218 7 24 chr9 94221575 94221873 -48049571 + AluJo SINE Alu 4 296 -16 1940 182 32 49 chr9 94221889 94222355 -48049089 - MER74A LTR ERVL -12 546 89 434 173 0 0 chr9 94222355 94222436 -48049008 - L1MDa LINE L1 -1553 5295 5215 7052 201 43 17 chr9 94222453 94223284 -48048160 - L1MDa LINE L1 -1796 5052 4244 2109 121 0 13 chr9 94223284 94223597 -48047847 - AluSx SINE Alu -3 309 1 7052 201 43 17 chr9 94223597 94224674 -48046770 - L1MDa LINE L1 -2604 4244 3094 909 120 0 0 chr9 94224676 94224809 -48046635 - AluSg/x SINE Alu -7 303 171 471 92 0 0 chr9 94224811 94224876 -48046568 + Alu SINE Alu 236 300 -12 229 125 0 0 chr9 94224876 94224908 -48046536 - Alu SINE Alu -265 37 6 5266 188 31 30 chr9 94224933 94225956 -48045488 - L1MDa LINE L1 -3756 3092 2072 705 197 0 0 chr9 94225956 94226073 -48045371 + FLAM_C SINE Alu 1 117 -16 5266 188 31 30 chr9 94226073 94226361 -48045083 - L1MDa LINE L1 -4776 2072 1775 2355 89 0 0 chr9 94226361 94226654 -48044790 + AluSc SINE Alu 1 293 -16 5266 188 31 30 chr9 94226654 94226881 -48044563 - L1MDa LINE L1 -5073 1775 1550 189 0 0 0 chr9 94226935 94226956 -48044488 + (A)n Simple_repeat Simple_repeat 1 21 0 539 143 10 0 chr9 94226958 94227056 -48044388 - L1M4c LINE L1 -3951 2695 2597 393 22 0 0 chr9 94227057 94227103 -48044341 + (TG)n Simple_repeat Simple_repeat 1 46 0 1410 80 0 6 chr9 94227107 94227283 -48044161 - AluSp SINE Alu -100 213 39 830 216 126 38 chr9 94227283 94228112 -48043332 - L1M4c LINE L1 -4172 2474 1358 2183 104 0 17 chr9 94228112 94228411 -48043033 - AluSg SINE Alu -16 294 1 830 216 126 38 chr9 94228411 94228773 -48042671 - L1M4c LINE L1 -5288 1358 1029 641 270 106 78 chr9 94228828 94229181 -48042263 - L1M4c LINE L1 -5747 795 453 2327 184 39 74 chr9 94229181 94229574 -48041870 - LTR9 LTR ERV1 0 612 248 2125 105 40 14 chr9 94229574 94229870 -48041574 + AluSx SINE Alu 1 304 -8 2327 184 39 74 chr9 94229870 94230110 -48041334 - LTR9 LTR ERV1 -364 248 1 641 270 106 78 chr9 94230110 94230475 -48040969 - L1M4c LINE L1 -6089 453 57 721 274 6 62 chr9 94231143 94231468 -48039976 - L1MDa LINE L1 -6222 626 320 871 277 83 21 chr9 94231689 94232075 -48039369 - MER21B LTR ERV1 -126 737 328 518 233 47 8 chr9 94232127 94232256 -48039188 - MER21B LTR ERV1 -694 169 36 197 358 73 24 chr9 94232304 94232427 -48039017 - L2 LINE L2 -219 3053 2925 3551 186 67 45 chr9 94233852 94234092 -48037352 - L1MB3 LINE L1 -83 6100 5867 1689 160 4 4 chr9 94234092 94234361 -48037083 - AluJb SINE Alu -5 307 39 3551 186 67 45 chr9 94234361 94235054 -48036390 - L1MB3 LINE L1 -316 5867 5191 1722 73 65 0 chr9 94235054 94235314 -48036130 - L1MA5A LINE L1 -5 6292 6016 3551 186 67 45 chr9 94235314 94235702 -48035742 - L1MB3 LINE L1 -992 5191 4741 2372 90 10 6 chr9 94235702 94236013 -48035431 - AluSx SINE Alu 0 312 1 3551 186 67 45 chr9 94236013 94236295 -48035149 - L1MB3 LINE L1 -1442 4741 4467 966 92 0 15 chr9 94239567 94239697 -48031747 - AluSc SINE Alu -181 128 1 1520 73 0 0 chr9 94239700 94239891 -48031553 + AluY SINE Alu 119 309 -2 2262 102 3 13 chr9 94239906 94240209 -48031235 + AluSx SINE Alu 1 300 -12 2142 116 3 3 chr9 94240577 94240879 -48030565 - AluSx SINE Alu -10 302 1 2063 127 0 10 chr9 94240982 94241274 -48030170 - AluSx SINE Alu -20 292 4 2227 100 31 0 chr9 94241491 94241782 -48029662 + AluSx SINE Alu 1 300 -12 219 260 0 0 chr9 94243191 94243241 -48028203 - L3 LINE CR1 -2 1575 1526 225 0 0 0 chr9 94243496 94243521 -48027923 + (TG)n Simple_repeat Simple_repeat 1 25 0 2827 217 58 31 chr9 94243573 94243915 -48027529 + MER82 DNA MER2_type 1 332 -321 1872 146 0 56 chr9 94243915 94244047 -48027397 + AluSx SINE Alu 1 139 -173 2316 70 0 36 chr9 94244047 94244349 -48027095 + AluY SINE Alu 1 291 -20 198 0 0 0 chr9 94244349 94244371 -48027073 + (TTAAA)n Simple_repeat Simple_repeat 2 23 0 1872 146 0 56 chr9 94244371 94244560 -48026884 + AluSx SINE Alu 137 305 -7 2827 217 58 31 chr9 94244560 94244852 -48026592 + MER82 DNA MER2_type 332 652 -1 392 244 54 71 chr9 94245136 94245273 -48026171 + MER5B DNA MER1_type 6 151 -38 1977 114 26 0 chr9 94245275 94245547 -48025897 + AluSg SINE Alu 2 280 -30 211 265 0 20 chr9 94245574 94245623 -48025821 - MER5B DNA MER1_type -129 49 2 1310 212 137 33 chr9 94246625 94247115 -48024329 - L1MC4 LINE L1 -382 7660 7120 31 65 0 13 chr9 94247144 94247188 -48024256 + AT_rich Low_complexity Low_complexity 1 45 -31 1853 142 7 34 chr9 94247188 94247483 -48023961 - AluSx SINE Alu -25 287 1 31 65 0 13 chr9 94247483 94247515 -48023929 + AT_rich Low_complexity Low_complexity 45 76 0 2344 92 0 16 chr9 94247524 94247839 -48023605 - AluSx SINE Alu -2 310 1 388 292 19 7 chr9 94247965 94248030 -48023414 - L1MA10 LINE L1 -9 6325 6261 2693 224 63 19 chr9 94248030 94249495 -48021949 - L1ME1 LINE L1 -67 6099 4437 1542 167 0 19 chr9 94249497 94249761 -48021683 - AluJo SINE Alu -13 299 41 1931 157 0 4 chr9 94249828 94250137 -48021307 + AluJb SINE Alu 3 310 0 4040 183 103 133 chr9 94250137 94250252 -48021192 - L1MC4a LINE L1 -968 6840 6723 2045 136 3 10 chr9 94250252 94250562 -48020882 - AluSx SINE Alu -4 308 1 4040 183 103 133 chr9 94250562 94251721 -48019723 - L1MC4a LINE L1 -1085 6723 5625 1985 92 60 4 chr9 94251721 94252002 -48019442 + AluSx SINE Alu 1 297 -15 4040 183 103 133 chr9 94252002 94252363 -48019081 - L1MC4a LINE L1 -2183 5625 5254 976 289 57 23 chr9 94252542 94253072 -48018372 - L1MC4a LINE L1 -1092 5054 4507 2379 91 0 3 chr9 94253074 94253381 -48018063 - AluSg1 SINE Alu -3 306 1 233 329 61 12 chr9 94254308 94254390 -48017054 + L2 LINE L2 3150 3235 -37 323 333 49 82 chr9 94258776 94259400 -48012044 - L2 LINE L2 0 3272 2669 1502 229 67 36 chr9 94259415 94259804 -48011640 - MLT1E LTR MaLR 0 593 193 830 268 106 28 chr9 94259805 94260124 -48011320 - MER77 LTR ERV1 -6 599 295 180 0 0 0 chr9 94260138 94260158 -48011286 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1264 198 16 28 chr9 94260546 94260799 -48010645 - AluJo SINE Alu -20 292 43 293 289 25 74 chr9 94261074 94261114 -48010330 + MIR SINE MIR 20 60 -148 2336 99 0 0 chr9 94261114 94261416 -48010028 - AluSc SINE Alu -7 302 1 293 289 25 74 chr9 94261416 94261496 -48009948 + MIR SINE MIR 60 134 -74 1068 125 5 50 chr9 94261529 94261729 -48009715 - MER20 DNA MER1_type 0 219 29 182 326 0 0 chr9 94262239 94262285 -48009159 + MIR SINE MIR 21 66 -142 2089 136 0 0 chr9 94262859 94263168 -48008276 - AluY SINE Alu -2 309 1 282 291 108 69 chr9 94263731 94263910 -48007534 - MIR SINE MIR -40 222 33 2270 88 7 0 chr9 94263910 94264204 -48007240 - AluY SINE Alu -15 296 1 282 291 108 69 chr9 94264204 94264227 -48007217 - MIR SINE MIR -229 33 12 1757 185 0 0 chr9 94264229 94264527 -48006917 - AluJb SINE Alu -14 298 1 3155 147 35 128 chr9 94264942 94264996 -48006448 - L1MB8 LINE L1 -10 6168 6111 243 79 0 0 chr9 94264996 94265034 -48006410 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 1667 211 3 0 chr9 94265034 94265319 -48006125 - AluJb SINE Alu -26 286 1 3155 147 35 128 chr9 94265319 94265908 -48005536 - L1MB8 LINE L1 -66 6112 5618 2257 116 0 6 chr9 94265908 94266219 -48005225 - AluSp SINE Alu -4 309 1 3155 147 35 128 chr9 94266219 94266419 -48005025 - L1MB8 LINE L1 -560 5618 5401 22 0 0 0 chr9 94268511 94268533 -48002911 + AT_rich Low_complexity Low_complexity 1 22 0 31 76 0 0 chr9 94268546 94268612 -48002832 + AT_rich Low_complexity Low_complexity 1 66 0 284 219 0 0 chr9 94268732 94268805 -48002639 + (TA)n Simple_repeat Simple_repeat 1 73 0 272 193 34 11 chr9 94268905 94268993 -48002451 + (TA)n Simple_repeat Simple_repeat 1 90 0 1840 166 0 17 chr9 94268993 94269337 -48002107 - AluSx SINE Alu 0 339 1 1983 125 3 30 chr9 94270655 94270960 -48000484 - AluSx SINE Alu -15 297 1 2246 115 0 0 chr9 94271007 94271319 -48000125 - AluSx SINE Alu 0 312 1 379 343 112 6 chr9 94271598 94271767 -47999677 - L3 LINE CR1 -231 1346 1160 21 71 0 0 chr9 94271888 94271930 -47999514 + AT_rich Low_complexity Low_complexity 1 42 0 2328 100 0 0 chr9 94272232 94272531 -47998913 - AluSg SINE Alu -11 299 1 612 222 131 0 chr9 94272701 94272877 -47998567 + MER105 DNA DNA 4 202 -2 1622 283 108 16 chr9 94272979 94273607 -47997837 + L2 LINE L2 734 1419 -1895 209 350 73 7 chr9 94273780 94273917 -47997527 - L2 LINE L2 -230 3042 2897 1770 157 25 0 chr9 94273986 94274272 -47997172 - AluJo SINE Alu -19 293 1 273 293 55 123 chr9 94274637 94274890 -47996554 - L2 LINE L2 -44 3228 2993 204 196 33 33 chr9 94274893 94274985 -47996459 + (TTATA)n Simple_repeat Simple_repeat 3 94 0 2141 101 3 13 chr9 94274987 94275285 -47996159 - AluSx SINE Alu -17 295 1 27 0 0 0 chr9 94276480 94276507 -47994937 + AT_rich Low_complexity Low_complexity 1 27 0 2203 110 0 10 chr9 94277607 94277908 -47993536 - AluSx SINE Alu -14 298 1 292 294 191 16 chr9 94279336 94279530 -47991914 - L2 LINE L2 -2 3311 3084 2270 179 41 23 chr9 94279530 94280017 -47991427 + L1MC3 LINE L1 6366 6861 -924 520 93 13 0 chr9 94280021 94280096 -47991348 + L1MC1 LINE L1 6252 6327 -6 2230 92 7 0 chr9 94280100 94280395 -47991049 - AluSx SINE Alu -15 297 1 1960 139 3 0 chr9 94280421 94280708 -47990736 - AluSp SINE Alu -21 292 5 478 278 68 28 chr9 94281234 94281410 -47990034 + MER5A DNA MER1_type 7 189 0 297 208 143 0 chr9 94282007 94282084 -47989360 + L2 LINE L2 3226 3313 0 2133 122 0 0 chr9 94282437 94282723 -47988721 + AluSq SINE Alu 1 286 -27 297 0 0 0 chr9 94282723 94282756 -47988688 + (CAT)n Simple_repeat Simple_repeat 2 34 0 231 293 35 43 chr9 94282865 94282981 -47988463 - L1MC/D LINE L1 -2072 5736 5622 227 286 79 0 chr9 94283045 94283185 -47988259 - L1MC/D LINE L1 -2331 5477 5327 969 195 20 15 chr9 94283385 94283585 -47987859 - AluSq SINE Alu -109 204 4 2299 97 0 0 chr9 94283709 94284007 -47987437 - AluSc SINE Alu -11 298 1 28 0 0 0 chr9 94284013 94284041 -47987403 + AT_rich Low_complexity Low_complexity 1 28 0 421 287 10 41 chr9 94284266 94284477 -47986967 - L1ME LINE L1 -589 5532 5316 222 37 0 0 chr9 94284477 94284504 -47986940 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2077 118 0 0 chr9 94284507 94284786 -47986658 - AluSg SINE Alu -31 279 1 421 287 10 41 chr9 94284786 94284857 -47986587 - L1ME LINE L1 -807 5314 5255 2400 94 0 0 chr9 94284956 94285263 -47986181 + AluSq SINE Alu 1 307 -6 844 181 7 13 chr9 94285970 94286119 -47985325 - MSTD LTR MaLR 0 396 249 520 214 0 10 chr9 94286165 94286268 -47985176 - MSTD LTR MaLR -326 102 1 2053 130 0 7 chr9 94286562 94286855 -47984589 + AluSx SINE Alu 1 291 -21 290 219 256 6 chr9 94286968 94287024 -47984420 + L1M4 LINE L1 4304 4345 -1801 2220 119 0 0 chr9 94287024 94287319 -47984125 + AluSg SINE Alu 3 297 -13 290 219 256 6 chr9 94287319 94287422 -47984022 + L1M4 LINE L1 4345 4503 -1643 446 243 98 0 chr9 94287427 94287589 -47983855 + L1M4 LINE L1 4773 4955 -1191 2128 114 0 29 chr9 94287674 94287981 -47983463 + AluSx SINE Alu 1 298 -14 4717 203 33 7 chr9 94288249 94289832 -47981612 - L1MD1 LINE L1 -1 6241 4612 2200 113 0 7 chr9 94289832 94290133 -47981311 + AluSq SINE Alu 2 300 -13 4717 203 33 7 chr9 94290133 94290182 -47981262 - L1MD1 LINE L1 -1630 4612 4566 2150 191 59 60 chr9 94290178 94290315 -47981129 - L1M4 LINE L1 -816 5330 5194 * 1903 161 20 0 chr9 94290315 94290613 -47980831 - AluJb SINE Alu -3 309 6 2150 191 59 60 chr9 94290613 94290684 -47980760 - L1M4 LINE L1 -952 5194 5124 1544 142 0 145 chr9 94290684 94291015 -47980429 - AluJb SINE Alu -23 289 7 2150 191 59 60 chr9 94291015 94291516 -47979928 - L1M4 LINE L1 -1022 5124 4621 2042 128 7 0 chr9 94291584 94291865 -47979579 + AluSx SINE Alu 1 283 -29 23 0 0 0 chr9 94292112 94292135 -47979309 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr9 94292274 94292310 -47979134 + AT_rich Low_complexity Low_complexity 1 36 0 227 258 135 11 chr9 94292417 94292506 -47978938 + MIR SINE MIR 52 151 -57 3054 188 85 25 chr9 94292843 94293158 -47978286 + MER44D DNA MER2_type 1 295 -2192 1338 114 86 0 chr9 94293158 94293260 -47978184 + MER30 DNA MER1_type 3 95 -135 360 0 0 0 chr9 94293260 94293300 -47978144 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1338 114 86 0 chr9 94293300 94293407 -47978037 + MER30 DNA MER1_type 95 230 0 3054 188 85 25 chr9 94293407 94293782 -47977662 + MER44D DNA MER2_type 295 605 0 1502 108 0 16 chr9 94293784 94294033 -47977411 - MER6 DNA MER2_type 0 865 621 311 286 9 29 chr9 94294064 94294169 -47977275 + L1ME3 LINE L1 6058 6160 -2 1047 169 38 97 chr9 94294192 94294390 -47977054 + L1MC5 LINE L1 7335 7500 -461 1794 175 13 0 chr9 94294390 94294693 -47976751 + AluJb SINE Alu 1 307 -5 1047 169 38 97 chr9 94294693 94294885 -47976559 + L1MC5 LINE L1 7500 7702 -259 1699 241 113 63 chr9 94294897 94295029 -47976415 + L1M4 LINE L1 3635 3759 -2387 2457 86 0 0 chr9 94295029 94295342 -47976102 + AluSp SINE Alu 1 313 0 1699 241 113 63 chr9 94295342 94295481 -47975963 + L1M4 LINE L1 3759 3890 -2256 2260 88 10 10 chr9 94295481 94295776 -47975668 + AluY SINE Alu 1 295 -16 1699 241 113 63 chr9 94295776 94296572 -47974872 + L1M4 LINE L1 3890 4774 -1372 2274 102 0 10 chr9 94296572 94296876 -47974568 - AluSx SINE Alu -11 301 1 1699 241 113 63 chr9 94296876 94297023 -47974421 + L1M4 LINE L1 4774 4912 -1234 1111 187 128 17 chr9 94297124 94297576 -47973868 - L1M3 LINE L1 -720 5460 4968 4100 177 27 7 chr9 94297614 94298382 -47973062 - L1PA13 LINE L1 -6003 784 1 547 183 40 8 chr9 94298387 94298513 -47972931 + L1MB8 LINE L1 6044 6173 -5 2184 113 7 0 chr9 94298515 94298807 -47972637 + AluSx SINE Alu 1 294 -18 285 154 0 0 chr9 94299689 94299809 -47971635 + FLAM_C SINE Alu 82 201 0 810 196 82 5 chr9 94299812 94300006 -47971438 - MER4C LTR ERV1 -222 243 35 1559 360 141 11 chr9 94300007 94300474 -47970970 - MER1A DNA MER1_type -1 528 1 282 102 0 20 chr9 94300474 94300517 -47970927 - MER4A LTR ERV1 -622 42 1 2600 160 135 46 chr9 94300975 94301118 -47970326 - LTR8A LTR ERV1 0 727 598 1600 103 12 21 chr9 94301118 94301360 -47970084 - AluSg/x SINE Alu -2 310 71 2600 160 135 46 chr9 94301360 94301884 -47969560 - LTR8A LTR ERV1 -129 598 1 323 223 203 61 chr9 94301909 94302020 -47969424 + MIR SINE MIR 1 95 -167 2483 59 16 0 chr9 94302020 94302326 -47969118 + AluY SINE Alu 1 311 0 323 223 203 61 chr9 94302326 94302411 -47969033 + MIR SINE MIR 95 225 -37 2307 107 139 0 chr9 94302432 94302806 -47968638 + MSTA LTR MaLR 1 426 -2 198 0 0 0 chr9 94302950 94302972 -47968472 + (TTA)n Simple_repeat Simple_repeat 3 24 0 23108 25 0 0 chr9 94302972 94306473 -47964971 - L1PA3 LINE L1 -18 6137 2638 1026 24 0 0 chr9 94306473 94306598 -47964846 + L1PA3 LINE L1 2511 2635 -3511 721 207 0 15 chr9 94306698 94306833 -47964611 + FLAM_A SINE Alu 1 133 0 372 271 79 62 chr9 94307530 94307707 -47963737 - MIR SINE MIR -50 212 33 537 154 48 139 chr9 94307907 94307974 -47963470 + MER20 DNA MER1_type 29 101 -118 1758 179 27 10 chr9 94307974 94308275 -47963169 + AluJo SINE Alu 1 306 -6 537 154 48 139 chr9 94308275 94308415 -47963029 + MER20 DNA MER1_type 101 217 -2 2255 87 0 17 chr9 94308649 94308949 -47962495 + AluSg SINE Alu 1 295 -15 253 204 34 34 chr9 94310615 94310703 -47960741 - L1MC4 LINE L1 -1314 6728 6641 278 226 71 0 chr9 94311402 94311486 -47959958 + L1ME3A LINE L1 6065 6154 -16 198 314 38 94 chr9 94312678 94312837 -47958607 - L3b LINE CR1 -73 1510 1361 1938 79 114 25 chr9 94312913 94313193 -47958251 - AluSg SINE Alu -5 305 1 2134 128 0 7 chr9 94313541 94313838 -47957606 - AluSq SINE Alu -18 295 1 627 251 154 66 chr9 94314022 94314829 -47956615 - L1MC5 LINE L1 -178 7783 6906 2016 148 0 0 chr9 94314830 94315137 -47956307 - AluSx SINE Alu 0 307 1 204 363 12 0 chr9 94317225 94317305 -47954139 - MIR SINE MIR -23 239 159 21 36 0 0 chr9 94318617 94318645 -47952799 + AT_rich Low_complexity Low_complexity 1 28 0 225 163 47 0 chr9 94318645 94318688 -47952756 - LTR33A LTR ERVL -8 515 471 2364 104 0 0 chr9 94318693 94318992 -47952452 - AluSx SINE Alu -13 299 1 389 278 37 9 chr9 94320152 94320260 -47951184 + MER81 DNA DNA 3 113 -1 221 302 35 0 chr9 94320884 94320970 -47950474 - MIR SINE MIR -109 153 65 1394 162 147 8 chr9 94322723 94322988 -47948456 - AluJo SINE Alu 0 302 1 2345 95 0 0 chr9 94324049 94324354 -47947090 - AluSg SINE Alu -5 305 1 1597 126 35 12 chr9 94324521 94324776 -47946668 - AluSx SINE Alu -8 304 44 2234 108 0 16 chr9 94324929 94325235 -47946209 + AluSx SINE Alu 1 301 -11 2297 98 0 0 chr9 94325237 94325524 -47945920 + AluSg SINE Alu 1 287 -23 396 0 0 0 chr9 94327602 94327646 -47943798 + (CAT)n Simple_repeat Simple_repeat 3 46 0 424 276 186 30 chr9 94327846 94328389 -47943055 + L1ME4a LINE L1 5491 6118 -3 352 263 34 42 chr9 94329613 94329731 -47941713 - MIR3 SINE MIR -80 128 12 1859 142 23 16 chr9 94331303 94331612 -47939832 - AluSx SINE Alu -1 311 1 474 278 67 29 chr9 94332384 94332593 -47938851 - L3 LINE CR1 -79 1498 1282 24 32 0 0 chr9 94334728 94334759 -47936685 + AT_rich Low_complexity Low_complexity 1 31 0 2430 77 0 0 chr9 94336092 94336392 -47935052 - AluY SINE Alu -11 300 1 746 248 198 11 chr9 94337015 94337455 -47933989 - L1ME3A LINE L1 0 6170 5649 644 209 82 8 chr9 94338561 94338695 -47932749 - FRAM SINE Alu -32 144 1 187 317 48 48 chr9 94338967 94339071 -47932373 - L2 LINE L2 -253 3060 2957 229 302 38 9 chr9 94339297 94339403 -47932041 + Charlie8 DNA MER1_type 92 200 -2217 2323 104 0 0 chr9 94339647 94339946 -47931498 - AluSx SINE Alu -13 299 1 943 236 172 21 chr9 94340018 94340484 -47930960 + L1MC4 LINE L1 6695 7230 -812 907 176 32 77 chr9 94340492 94340713 -47930731 + AluJb SINE Alu 86 296 -16 1556 144 18 7 chr9 94340750 94341035 -47930409 + MER47A DNA MER2_type 79 366 0 228 226 16 0 chr9 94342735 94342797 -47928647 + MER58 DNA MER1_type 2358 2420 0 21 0 0 0 chr9 94342857 94342878 -47928566 + AT_rich Low_complexity Low_complexity 1 21 0 368 257 105 58 chr9 94342974 94343145 -47928299 - MIR SINE MIR -26 236 58 243 345 34 14 chr9 94345603 94345751 -47925693 + MIR3 SINE MIR 3 153 -55 201 323 0 0 chr9 94346153 94346215 -47925229 - MIR3 SINE MIR -48 160 99 21 0 0 0 chr9 94346626 94346647 -47924797 + AT_rich Low_complexity Low_complexity 1 21 0 2169 113 0 0 chr9 94347492 94347776 -47923668 + AluSc SINE Alu 2 285 -24 544 205 13 20 chr9 94348456 94348607 -47922837 - L1MD3 LINE L1 -6 7989 7840 1346 255 70 26 chr9 94349723 94350178 -47921266 + L1MC4a LINE L1 5380 5854 -1954 2340 113 3 0 chr9 94350207 94350517 -47920927 + AluSp SINE Alu 1 311 -2 2319 126 23 50 chr9 94350554 94350991 -47920453 + MSTB1 LTR MaLR 8 432 0 444 281 31 95 chr9 94351025 94351177 -47920267 + L1MC4a LINE L1 5918 6041 -1767 1050 57 43 0 chr9 94351177 94351318 -47920126 + L1PA4 LINE L1 6006 6152 -3 444 281 31 95 chr9 94351318 94351482 -47919962 + L1MC4a LINE L1 6041 6214 -1594 282 292 198 11 chr9 94351629 94352027 -47919417 + L1MC4 LINE L1 6414 6819 -989 339 270 87 22 chr9 94352151 94352336 -47919108 + L1MC5 LINE L1 7020 7216 -745 350 309 29 0 chr9 94352383 94352519 -47918925 + L1MC4 LINE L1 7335 7474 -568 2195 114 0 0 chr9 94353057 94353347 -47918097 - AluSx SINE Alu -22 290 1 323 245 109 48 chr9 94353379 94353526 -47917918 - L1MC5 LINE L1 -60 7901 7746 2058 135 0 0 chr9 94355669 94355951 -47915493 - AluJb SINE Alu -9 303 22 203 352 16 71 chr9 94356106 94356288 -47915156 - MIR SINE MIR -56 206 35 285 205 13 51 chr9 94356672 94356750 -47914694 + L1MC/D LINE L1 5749 5823 -1985 354 270 33 1 chr9 94357015 94357123 -47914321 - MER5A DNA MER1_type -51 130 17 1776 147 4 14 chr9 94357418 94357697 -47913747 - AluJo SINE Alu -30 282 7 1185 123 0 17 chr9 94359762 94359941 -47911503 - AluSg/x SINE Alu -5 307 132 21 57 0 0 chr9 94361705 94361740 -47909704 + AT_rich Low_complexity Low_complexity 1 35 0 2344 100 0 3 chr9 94363978 94364289 -47907155 - AluSg SINE Alu 0 310 1 28 0 0 0 chr9 94364291 94364319 -47907125 + AT_rich Low_complexity Low_complexity 1 28 0 2332 205 93 16 chr9 94366157 94366805 -47904639 + L1ME1 LINE L1 5473 6333 -1 755 211 0 0 chr9 94366992 94367125 -47904319 - FLAM_A SINE Alu 0 133 1 2246 120 0 0 chr9 94367139 94367439 -47904005 - AluSx SINE Alu -12 300 1 387 106 0 0 chr9 94367677 94367743 -47903701 + (TCC)n Simple_repeat Simple_repeat 1 66 0 2257 75 0 4 chr9 94368946 94369227 -47902217 - AluSg SINE Alu -30 280 1 407 306 191 0 chr9 94370999 94371208 -47900236 - MLT1I LTR MaLR 0 409 161 323 115 0 0 chr9 94371424 94371476 -47899968 - L1MB7 LINE L1 -18 6166 6115 1859 140 30 0 chr9 94371481 94371746 -47899698 + AluSx SINE Alu 3 275 -37 195 42 0 0 chr9 94371751 94371775 -47899669 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4380 159 50 57 chr9 94372126 94372873 -47898571 + L1MB5 LINE L1 4584 5335 -839 1705 175 7 17 chr9 94372873 94373164 -47898280 + AluJo SINE Alu 10 297 -15 4380 159 50 57 chr9 94373164 94373979 -47897465 + L1MB5 LINE L1 5335 6152 -22 288 0 0 0 chr9 94374930 94374962 -47896482 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2312 71 0 4 chr9 94374969 94375250 -47896194 - AluSg SINE Alu -30 280 1 23 0 0 0 chr9 94375251 94375274 -47896170 + AT_rich Low_complexity Low_complexity 1 23 0 214 203 14 14 chr9 94375350 94375424 -47896020 + CT-rich Low_complexity Low_complexity 1 74 0 895 180 6 49 chr9 94375944 94376127 -47895317 - AluJo SINE Alu -16 296 122 852 226 10 34 chr9 94376143 94376268 -47895176 - MER58A DNA MER1_type -2196 224 104 3819 104 7 20 chr9 94376268 94376823 -47894621 - LTR14 LTR ERVK 0 548 1 852 226 10 34 chr9 94376823 94376901 -47894543 - MER58A DNA MER1_type -2316 104 26 1965 144 3 22 chr9 94377894 94378207 -47893237 + AluJo SINE Alu 1 307 -5 3465 132 75 19 chr9 94378270 94378473 -47892971 + Tigger3b DNA MER2_type 1 191 -2837 1959 114 16 23 chr9 94378473 94378780 -47892664 + AluSx SINE Alu 1 305 -7 3465 132 75 19 chr9 94378780 94379226 -47892218 + Tigger3b DNA MER2_type 191 687 -544 1070 192 93 0 chr9 94379235 94379547 -47891897 + L1 LINE L1 2927 3267 -2879 2957 125 43 34 chr9 94379548 94379868 -47891576 + Tigger3b DNA MER2_type 669 999 -2029 1818 151 0 7 chr9 94379868 94380175 -47891269 - AluJb SINE Alu 0 305 1 2957 125 43 34 chr9 94380175 94380411 -47891033 + Tigger3b DNA MER2_type 999 1231 0 189 333 0 0 chr9 94381174 94381228 -47890216 - L2 LINE L2 -872 2442 2389 1841 142 3 22 chr9 94381272 94381624 -47889820 - MER4A LTR ERV1 0 664 261 598 95 21 11 chr9 94381624 94381719 -47889725 - MER4A LTR ERV1 -566 98 3 187 232 54 54 chr9 94381906 94381962 -47889482 - MIR SINE MIR -50 212 157 312 236 32 114 chr9 94383102 94383225 -47888219 - L2 LINE L2 0 3313 3201 336 345 45 0 chr9 94383264 94383374 -47888070 + L2 LINE L2 3158 3272 0 6187 87 68 19 chr9 94383747 94385309 -47886135 - MER4-int LTR ERV1 -1634 4964 2738 1197 157 94 0 chr9 94385310 94385545 -47885899 + LTR8 LTR ERV1 1 257 -434 292 22 0 22 chr9 94385545 94385591 -47885853 - MER4-int LTR ERV1 -4103 2495 2451 2590 233 107 31 chr9 94385747 94386188 -47885256 + L1MEc LINE L1 40 446 -5950 209 33 33 0 chr9 94386188 94386218 -47885226 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2590 233 107 31 chr9 94386218 94386785 -47884659 + L1MEc LINE L1 446 1125 -5271 4478 136 80 16 chr9 94386884 94387507 -47883937 + L1MC1 LINE L1 5420 6114 -219 1725 158 45 12 chr9 94387507 94387837 -47883607 - MER2 DNA MER2_type -1 343 3 4478 136 80 16 chr9 94387837 94388072 -47883372 + L1MC1 LINE L1 6114 6333 0 22 35 0 0 chr9 94388091 94388120 -47883324 + AT_rich Low_complexity Low_complexity 1 29 0 504 273 130 20 chr9 94388217 94388342 -47883102 - L1MEc LINE L1 -3685 2530 2420 1445 147 81 4 chr9 94388342 94388614 -47882830 - L1PA16 LINE L1 0 6166 5874 504 273 130 20 chr9 94388614 94389118 -47882326 - L1MEc LINE L1 -3795 2420 1875 991 167 73 20 chr9 94389138 94389342 -47882102 - MER20 DNA MER1_type -3 216 2 245 169 13 39 chr9 94389487 94389564 -47881880 - L1MEc LINE L1 -4627 1588 1514 229 154 0 0 chr9 94389634 94389686 -47881758 + T-rich Low_complexity Low_complexity 1 180 0 788 192 0 0 chr9 94389686 94389804 -47881640 - FLAM_A SINE Alu 0 170 1 368 292 85 31 chr9 94389825 94390543 -47880901 - L1MEc LINE L1 -4711 1504 790 2350 96 0 10 chr9 94390661 94390973 -47880471 + AluSg SINE Alu 1 309 -1 270 0 0 0 chr9 94390973 94391003 -47880441 + (TA)n Simple_repeat Simple_repeat 2 31 0 560 294 47 122 chr9 94391395 94391820 -47879624 - L1M4c LINE L1 -900 1843 1251 24 32 0 0 chr9 94393172 94393203 -47878241 + AT_rich Low_complexity Low_complexity 1 31 0 199 291 76 0 chr9 94394233 94394312 -47877132 + MIR3 SINE MIR 70 154 -54 * 394 306 123 0 chr9 94394308 94394478 -47876966 + MIR SINE MIR 34 224 -38 2187 89 3 35 chr9 94394505 94394820 -47876624 - AluSq SINE Alu -8 305 1 2157 117 3 0 chr9 94395023 94395330 -47876114 + AluSx SINE Alu 1 308 0 355 259 9 35 chr9 94395340 94395456 -47875988 + L1ME4a LINE L1 5320 5432 -732 201 292 0 0 chr9 94395515 94395563 -47875881 + MER5B DNA MER1_type 131 178 0 237 231 93 9 chr9 94395947 94396055 -47875389 + L1ME4a LINE L1 5893 6009 -112 343 177 0 0 chr9 94397458 94397520 -47873924 - L1ME LINE L1 -369 5793 5732 2147 98 7 7 chr9 94397801 94398096 -47873348 + AluSc SINE Alu 1 295 -14 2279 102 0 0 chr9 94398135 94398428 -47873016 + AluSg SINE Alu 1 293 -17 2248 100 3 0 chr9 94398624 94398923 -47872521 + AluSg SINE Alu 1 300 -10 536 136 43 0 chr9 94398931 94399042 -47872402 - L1MA7 LINE L1 -222 6078 5952 599 146 0 29 chr9 94399085 94399188 -47872256 - AluSq SINE Alu -93 220 121 1774 107 128 26 chr9 94399188 94399431 -47872013 - L1MA7 LINE L1 -372 5940 5650 2291 121 0 0 chr9 94399431 94399736 -47871708 - AluSg SINE Alu -5 305 1 1774 107 128 26 chr9 94399736 94399837 -47871607 - L1MA7 LINE L1 -662 5650 5561 * 6781 145 26 49 chr9 94399830 94400139 -47871305 - L1P LINE L1 -767 5364 5049 2052 101 13 50 chr9 94400139 94400456 -47870988 - AluSc SINE Alu -4 305 1 6781 145 26 49 chr9 94400456 94400845 -47870599 - L1P LINE L1 -1082 5049 4653 2204 113 3 3 chr9 94400845 94401145 -47870299 + AluSx SINE Alu 12 311 -1 6781 145 26 49 chr9 94401145 94401838 -47869606 - L1P LINE L1 -1478 4653 4012 2132 135 0 0 chr9 94401838 94402135 -47869309 + AluSx SINE Alu 1 297 -15 6781 145 26 49 chr9 94402135 94402238 -47869206 - L1P LINE L1 -2119 4012 3908 2168 91 0 26 chr9 94402357 94402664 -47868780 - AluSq SINE Alu -10 303 5 6103 123 128 112 chr9 94402707 94404377 -47867067 + pTR5 LTR ERV1 742 2438 0 385 283 61 10 chr9 94404379 94404577 -47866867 + L1M4 LINE L1 3347 3554 -2592 484 247 140 84 chr9 94404578 94404931 -47866513 + L1M4 LINE L1 3634 3966 -2180 2506 181 25 22 chr9 94404931 94405479 -47865965 + L1MB7 LINE L1 5630 6179 -5 484 247 140 84 chr9 94405479 94405754 -47865690 + L1M4 LINE L1 3966 4328 -1818 717 223 72 78 chr9 94406239 94406737 -47864707 + L1M4 LINE L1 4350 4844 -1302 512 255 51 38 chr9 94406809 94406966 -47864478 + L3 LINE CR1 1271 1429 -148 2102 111 0 0 chr9 94407014 94407319 -47864125 + AluSx SINE Alu 6 310 0 2247 89 3 7 chr9 94407760 94408051 -47863393 + AluSc SINE Alu 1 290 -19 924 228 17 22 chr9 94408292 94408524 -47862920 - MER115 DNA AcHobo -19 674 444 496 326 76 0 chr9 94408593 94408765 -47862679 - MER115 DNA AcHobo -381 312 128 978 211 0 0 chr9 94408988 94409149 -47862295 - AluJb SINE Alu -18 294 134 203 32 65 0 chr9 94409149 94409180 -47862264 + T-rich Low_complexity Low_complexity 2 34 0 2089 104 0 0 chr9 94409180 94409477 -47861967 - L1PB1 LINE L1 -10 6141 5845 293 172 0 16 chr9 94409486 94409550 -47861894 + L1PB1 LINE L1 5777 5839 -312 355 191 36 67 chr9 94409558 94409687 -47861757 + L1MC4 LINE L1 1995 6983 -1339 256 100 50 80 chr9 94409696 94409796 -47861648 + (ATATG)n Simple_repeat Simple_repeat 3 99 0 12673 194 66 29 chr9 94409817 94409830 -47861614 - L1P5 LINE L1 -356 6511 6500 237 65 0 0 chr9 94409830 94409861 -47861583 + (CA)n Simple_repeat Simple_repeat 1 31 0 12673 194 66 29 chr9 94409861 94411817 -47859627 - L1P5 LINE L1 -367 6500 4618 2280 93 7 10 chr9 94411817 94412127 -47859317 - AluSq SINE Alu -4 309 1 12673 194 66 29 chr9 94412127 94412275 -47859169 - L1P5 LINE L1 -2249 4618 4477 2175 125 0 0 chr9 94412275 94412580 -47858864 - AluSg SINE Alu -5 305 1 12673 194 66 29 chr9 94412580 94412648 -47858796 - L1P5 LINE L1 -2390 4477 4413 333 0 0 0 chr9 94412648 94412685 -47858759 + (TTG)n Simple_repeat Simple_repeat 3 39 0 12673 194 66 29 chr9 94412685 94412859 -47858585 - L1P5 LINE L1 -2454 4413 4247 2329 115 3 6 chr9 94412859 94413173 -47858271 - AluSq SINE Alu 0 313 1 12673 194 66 29 chr9 94413173 94415284 -47856160 - L1P5 LINE L1 -2620 4247 2216 2296 96 0 7 chr9 94415284 94415587 -47855857 - AluSc SINE Alu -8 301 1 12673 194 66 29 chr9 94415587 94417285 -47854159 - L1P5 LINE L1 -4651 2216 6 890 121 0 15 chr9 94417310 94417442 -47854002 - FLAM_C SINE Alu 0 133 4 1529 175 89 14 chr9 94417527 94417807 -47853637 + AluJo SINE Alu 1 301 -11 213 94 0 0 chr9 94418502 94418534 -47852910 + (T)n Simple_repeat Simple_repeat 1 32 0 392 250 56 56 chr9 94419452 94419612 -47851832 - MIR SINE MIR -6 256 97 285 283 75 75 chr9 94419746 94419838 -47851606 + MIR3 SINE MIR 36 130 -78 2508 83 0 3 chr9 94419838 94420150 -47851294 - AluSq SINE Alu -2 311 1 285 283 75 75 chr9 94420150 94420216 -47851228 + MIR3 SINE MIR 129 194 -14 292 136 15 15 chr9 94421386 94421452 -47849992 + CT-rich Low_complexity Low_complexity 1 66 0 2091 132 0 7 chr9 94421751 94422054 -47849390 + AluSx SINE Alu 3 303 -9 393 276 97 25 chr9 94422103 94422372 -47849072 - L2 LINE L2 -767 2547 2183 439 295 120 17 chr9 94422455 94422689 -47848755 + L1MC/D LINE L1 5513 5770 -2038 9524 132 89 99 chr9 94422700 94422840 -47848604 + L1MB3 LINE L1 19 159 -6225 1498 106 18 9 chr9 94422840 94423067 -47848377 + MER30 DNA MER1_type 2 230 0 9524 132 89 99 chr9 94423067 94423665 -47847779 + L1MB3 LINE L1 159 761 -5623 2290 102 3 0 chr9 94423665 94423970 -47847474 + AluSg SINE Alu 1 306 -4 9524 132 89 99 chr9 94423970 94425014 -47846430 + L1MB3 LINE L1 761 1774 -4610 285 51 0 0 chr9 94425014 94425053 -47846391 + (TA)n Simple_repeat Simple_repeat 1 39 0 9524 132 89 99 chr9 94425053 94425711 -47845733 + L1MB3 LINE L1 1774 2437 -3947 39325 62 7 6 chr9 94425716 94431866 -47839578 - L1PA5 LINE L1 -2 6152 1 4344 182 39 27 chr9 94431908 94433176 -47838268 + L1MB3 LINE L1 4426 5721 -698 2273 109 0 0 chr9 94433176 94433470 -47837974 + AluSg SINE Alu 1 294 -16 4344 182 39 27 chr9 94433470 94434170 -47837274 + L1MB3 LINE L1 5721 6411 -8 28 48 0 0 chr9 94434285 94434327 -47837117 + AT_rich Low_complexity Low_complexity 1 42 0 479 276 88 57 chr9 94434492 94434876 -47836568 + L1ME3A LINE L1 5298 5693 -469 1366 113 0 5 chr9 94434876 94435061 -47836383 + AluSq SINE Alu 1 184 -129 457 247 62 19 chr9 94435061 94435223 -47836221 + L1ME3A LINE L1 5779 5947 -223 548 220 46 0 chr9 94435318 94435427 -47836017 + FLAM_A SINE Alu 1 114 -19 234 0 0 0 chr9 94435427 94435453 -47835991 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 21659 26 2 0 chr9 94435453 94438807 -47832637 - L1PA3 LINE L1 -10 6145 2786 350 270 91 28 chr9 94438991 94439421 -47832023 + L1M4c LINE L1 1360 1939 -832 379 0 0 0 chr9 94439675 94439717 -47831727 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1823 154 0 14 chr9 94439717 94440002 -47831442 - AluJb SINE Alu -1 322 1 22 35 0 0 chr9 94440044 94440073 -47831371 + AT_rich Low_complexity Low_complexity 1 29 0 267 247 12 25 chr9 94440349 94440430 -47831014 - MLT1K LTR MaLR 0 588 509 1546 181 29 0 chr9 94441981 94442258 -47829186 - AluJb SINE Alu 0 312 28 256 271 0 17 chr9 94442532 94442591 -47828853 - L2 LINE L2 0 3313 3256 828 211 21 5 chr9 94443036 94443230 -47828214 - L1ME LINE L1 -395 5771 5575 1773 264 80 83 chr9 94443234 94443689 -47827755 + L1M4 LINE L1 13 468 -6074 2148 103 3 0 chr9 94443689 94443989 -47827455 - AluSq SINE Alu -12 301 1 1773 264 80 83 chr9 94443989 94444826 -47826618 + L1M4 LINE L1 468 1301 -5241 2121 90 10 3 chr9 94444834 94445123 -47826321 + AluSp SINE Alu 1 291 -22 1667 161 73 52 chr9 94445134 94445488 -47825956 + L1MB5 LINE L1 5769 6133 -41 2001 103 3 48 chr9 94445488 94445800 -47825644 + AluSx SINE Alu 1 298 -14 1667 161 73 52 chr9 94445800 94445829 -47825615 + L1MB5 LINE L1 6133 6160 -14 207 0 0 0 chr9 94445878 94445901 -47825543 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2248 58 3 20 chr9 94445904 94446197 -47825247 - AluY SINE Alu -23 288 1 437 208 20 20 chr9 94446331 94446432 -47825012 + L1M4 LINE L1 5428 5528 -650 1678 142 7 58 chr9 94446692 94447001 -47824443 + AluSx SINE Alu 3 295 -17 241 217 14 43 chr9 94447019 94447088 -47824356 - L1ME LINE L1 -577 5589 5523 456 232 27 9 chr9 94447243 94447355 -47824089 - L1ME LINE L1 -636 5542 5429 2230 57 3 3 chr9 94448782 94449086 -47822358 + AluY SINE Alu 1 304 0 264 252 19 47 chr9 94449469 94449576 -47821868 + L2 LINE L2 3124 3227 -86 232 88 0 123 chr9 94449579 94449610 -47821834 - L1ME3A LINE L1 0 6170 6147 756 21 43 0 chr9 94449610 94449704 -47821740 + L1PA4 LINE L1 6055 6152 -3 232 88 0 123 chr9 94449704 94449729 -47821715 - L1ME3A LINE L1 -23 6147 6121 203 234 13 0 chr9 94449735 94449812 -47821632 + (TA)n Simple_repeat Simple_repeat 2 79 0 1875 245 98 28 chr9 94449825 94450517 -47820927 - L1ME3A LINE L1 -44 6126 5383 267 203 34 17 chr9 94450592 94450651 -47820793 - MLT1K LTR MaLR -31 557 498 1223 153 31 54 chr9 94451559 94451820 -47819624 + L1MC3 LINE L1 7521 7775 -10 356 209 58 12 chr9 94451824 94451910 -47819534 - MER69A DNA AcHobo -87 90 1 263 267 37 59 chr9 94452000 94452135 -47819309 + MIR SINE MIR 60 191 -71 838 139 0 0 chr9 94452317 94452439 -47819005 + FLAM_C SINE Alu 1 122 -21 24 32 0 0 chr9 94452440 94452471 -47818973 + AT_rich Low_complexity Low_complexity 1 31 0 2376 81 0 3 chr9 94452534 94452842 -47818602 - AluSq SINE Alu -6 307 1 1376 213 3 3 chr9 94452881 94453172 -47818272 - AluJb SINE Alu -7 305 15 2181 92 23 0 chr9 94453202 94453506 -47817938 - AluSx SINE Alu -1 311 1 26 30 0 0 chr9 94453584 94453617 -47817827 + AT_rich Low_complexity Low_complexity 1 33 0 367 181 48 0 chr9 94453617 94453700 -47817744 + HAL1 LINE L1 1578 1664 -843 253 233 14 27 chr9 94453694 94453767 -47817677 + HAL1 LINE L1 12 83 -2424 * 1158 186 18 5 chr9 94453771 94453992 -47817452 - AluJo SINE Alu -5 307 84 438 132 0 0 chr9 94454041 94454117 -47817327 + FLAM_C SINE Alu 68 143 0 457 306 111 10 chr9 94454735 94454934 -47816510 + MIR SINE MIR 7 225 -37 1806 110 27 53 chr9 94456470 94456771 -47814673 + AluSx SINE Alu 1 293 -19 2173 112 0 0 chr9 94457049 94457361 -47814083 - AluSx SINE Alu 0 312 1 793 205 123 37 chr9 94457626 94457915 -47813529 - MER58B DNA MER1_type -16 325 1 1409 213 167 2 chr9 94459568 94459982 -47811462 + L1MC4 LINE L1 6704 7185 -857 1829 95 0 0 chr9 94460492 94460733 -47810711 - AluSc SINE Alu -68 241 1 248 274 42 63 chr9 94460756 94460851 -47810593 - MIR SINE MIR -83 125 33 185 252 25 82 chr9 94461345 94461504 -47809940 + L2 LINE L2 2556 2705 -609 1488 185 84 63 chr9 94461635 94462225 -47809219 - L1ME LINE L1 -429 5737 5161 1986 141 3 6 chr9 94462225 94462538 -47808906 - AluSq SINE Alu -1 312 1 1488 185 84 63 chr9 94462538 94462637 -47808807 - L1ME LINE L1 -1005 5161 5066 1752 138 14 37 chr9 94462637 94462933 -47808511 - AluSx SINE Alu -23 289 1 1488 185 84 63 chr9 94462933 94463062 -47808382 - L1ME LINE L1 -1100 5066 4896 2351 166 109 50 chr9 94463161 94463624 -47807820 + L1MB7 LINE L1 4862 5403 -781 1791 159 3 3 chr9 94463624 94463919 -47807525 + AluJb SINE Alu 1 295 -17 2351 166 109 50 chr9 94463919 94464268 -47807176 + L1MB7 LINE L1 5403 5730 -454 1621 99 0 0 chr9 94464268 94464481 -47806963 + AluSc SINE Alu 1 213 -96 928 117 0 0 chr9 94464481 94464633 -47806811 + AluSg/x SINE Alu 157 308 0 358 154 44 0 chr9 94464647 94464760 -47806684 + L1MB7 LINE L1 5718 5942 -236 496 220 38 15 chr9 94464760 94464892 -47806552 - L1M4 LINE L1 -1107 5039 4905 706 174 53 89 chr9 94464985 94465232 -47806212 + L1MB7 LINE L1 5928 6165 -19 181 209 60 119 chr9 94466474 94466541 -47804903 - MIR3 SINE MIR -42 166 104 2038 77 17 30 chr9 94467387 94467685 -47803759 - AluSq SINE Alu -19 294 1 2046 100 0 4 chr9 94467696 94467998 -47803446 - AluSc SINE Alu 0 301 1 458 279 78 24 chr9 94469743 94470037 -47801407 - L1ME LINE L1 -475 5695 5386 390 322 85 10 chr9 94477698 94477897 -47793547 - MIR SINE MIR -41 221 8 998 254 217 44 chr9 94478467 94478528 -47792916 + L1ME3A LINE L1 3188 3237 -2909 1873 185 14 22 chr9 94478528 94478896 -47792548 - MLT1A1 LTR MaLR 0 365 1 998 254 217 44 chr9 94478896 94479152 -47792292 + L1ME3A LINE L1 3237 3447 -2699 1866 162 0 10 chr9 94479152 94479461 -47791983 - AluJo SINE Alu -6 306 1 998 254 217 44 chr9 94479461 94480367 -47791077 + L1ME3A LINE L1 3447 4624 -1522 298 307 102 0 chr9 94480401 94480538 -47790906 + L1ME3A LINE L1 4612 4762 -1384 1695 260 105 58 chr9 94480544 94480797 -47790647 + L1ME3A LINE L1 4917 5157 -1013 2434 61 0 0 chr9 94480797 94481094 -47790350 + AluY SINE Alu 1 297 -14 1695 260 105 58 chr9 94481094 94481621 -47789823 + L1ME3A LINE L1 5157 5658 -512 1087 173 14 37 chr9 94481621 94481699 -47789745 - MER6B DNA MER2_type -655 210 132 1588 158 3 59 chr9 94481699 94481844 -47789600 + AluJo SINE Alu 1 153 -159 1870 96 75 4 chr9 94481844 94482124 -47789320 + AluSg SINE Alu 2 301 -9 1588 158 3 59 chr9 94482124 94482301 -47789143 + AluJo SINE Alu 153 305 -7 1087 173 14 37 chr9 94482301 94482436 -47789008 - MER6B DNA MER2_type -733 132 2 1695 260 105 58 chr9 94482436 94482817 -47788627 + L1ME3A LINE L1 5658 6140 -30 21 36 0 0 chr9 94482857 94482885 -47788559 + AT_rich Low_complexity Low_complexity 1 28 0 285 315 0 0 chr9 94482999 94483110 -47788334 + L1ME LINE L1 5621 5731 -390 1090 242 82 77 chr9 94483441 94483760 -47787684 + L1MEd LINE L1 616 932 -5378 2371 74 0 0 chr9 94483760 94484057 -47787387 + AluY SINE Alu 1 297 -14 1090 242 82 77 chr9 94484057 94484724 -47786720 + L1MEd LINE L1 932 1654 -4656 * 6041 209 49 38 chr9 94484708 94486238 -47785206 + L1MB8 LINE L1 3333 4844 -1334 2080 115 0 13 chr9 94486238 94486542 -47784902 + AluSx SINE Alu 1 300 -12 6041 209 49 38 chr9 94486542 94486588 -47784856 + L1MB8 LINE L1 4844 4888 -1290 825 173 19 31 chr9 94486588 94486750 -47784694 + FRAM SINE Alu 1 159 -17 6041 209 49 38 chr9 94486750 94487114 -47784330 + L1MB8 LINE L1 4888 5246 -932 1289 137 191 31 chr9 94487114 94487370 -47784074 + AluSc SINE Alu 1 297 -2 6041 209 49 38 chr9 94487370 94488208 -47783236 + L1MB8 LINE L1 5246 6178 0 480 243 118 21 chr9 94488556 94488700 -47782744 + MER58A DNA MER1_type 1 158 0 2023 108 42 0 chr9 94488838 94489126 -47782318 - AluSg SINE Alu -10 300 1 3132 214 100 11 chr9 94489310 94490063 -47781381 - L1MD2 LINE L1 -94 6265 5446 314 130 87 29 chr9 94490121 94490190 -47781254 - L1ME4a LINE L1 -11 6110 6038 336 138 12 125 chr9 94490612 94490655 -47780789 - Charlie4 DNA MER1_type -34 1927 1895 2274 113 0 3 chr9 94490655 94490955 -47780489 - AluY SINE Alu -12 299 1 336 138 12 125 chr9 94490955 94490991 -47780453 - Charlie4 DNA MER1_type -66 1895 1857 1341 187 56 20 chr9 94491030 94491281 -47780163 - AluJb SINE Alu -23 289 30 710 243 68 17 chr9 94491327 94491562 -47779882 - Charlie4 DNA MER1_type -1701 260 14 559 115 0 21 chr9 94493342 94493438 -47778006 - AluSg/x SINE Alu 0 312 219 238 260 110 23 chr9 94493924 94494001 -47777443 + L1ME4a LINE L1 5745 5814 -307 1871 161 0 23 chr9 94494001 94494311 -47777133 + AluJb SINE Alu 3 305 -7 238 260 110 23 chr9 94494311 94494406 -47777038 + L1ME4a LINE L1 5814 5932 -189 1798 156 54 0 chr9 94494693 94494969 -47776475 + AluSx SINE Alu 11 301 -11 25 31 0 0 chr9 94496673 94496705 -47774739 + AT_rich Low_complexity Low_complexity 1 32 0 1924 157 3 3 chr9 94496706 94496993 -47774451 - AluJo SINE Alu -25 287 1 29 28 0 0 chr9 94497368 94497404 -47774040 + AT_rich Low_complexity Low_complexity 1 36 0 471 312 57 67 chr9 94500761 94501320 -47770124 + L1ME4a LINE L1 5455 5933 -188 1683 211 21 86 chr9 94501750 94502285 -47769159 + L1M4 LINE L1 -261 238 -6042 2548 184 20 9 chr9 94502297 94502753 -47768691 + L1M4 LINE L1 593 1058 -5222 1962 165 3 7 chr9 94502753 94503062 -47768382 + AluJb SINE Alu 1 308 -4 2548 184 20 9 chr9 94503062 94503164 -47768280 + L1M4 LINE L1 1058 1157 -5123 1923 230 31 38 chr9 94503157 94503877 -47767567 + L1M4 LINE L1 1393 2203 -4181 * 2770 212 116 68 chr9 94503857 94504320 -47767124 + L1M4 LINE L1 2808 3247 -3135 1528 69 0 0 chr9 94504320 94504494 -47766950 + AluY SINE Alu 1 174 -137 386 68 17 0 chr9 94504494 94504553 -47766891 + AluY SINE Alu 243 302 0 2770 212 116 68 chr9 94504553 94505282 -47766162 + L1M4 LINE L1 3246 4119 -2263 395 194 61 0 chr9 94505290 94505388 -47766056 + L1MB7 LINE L1 6037 6140 -44 653 154 90 45 chr9 94505399 94505555 -47765889 + FRAM SINE Alu 1 163 -13 2398 101 0 0 chr9 94507390 94507687 -47763757 + AluSg SINE Alu 1 297 -13 2245 99 0 19 chr9 94507689 94508001 -47763443 + AluSc SINE Alu 4 309 0 1206 228 121 19 chr9 94508006 94508379 -47763065 + MER77 LTR ERV1 184 594 -11 203 188 0 78 chr9 94509025 94509089 -47762355 + G-rich Low_complexity Low_complexity 5 63 0 1998 118 0 82 chr9 94509352 94509683 -47761761 - AluSx SINE Alu -5 307 4 2609 63 0 0 chr9 94509812 94510112 -47761332 + AluY SINE Alu 1 300 -11 291 283 43 0 chr9 94510317 94510409 -47761035 + L1MB3 LINE L1 6081 6176 -7 2302 96 20 0 chr9 94511214 94511515 -47759929 + AluSg SINE Alu 1 307 -3 1895 141 27 13 chr9 94511879 94512177 -47759267 + AluJb SINE Alu 1 302 -10 2299 107 3 0 chr9 94514712 94515010 -47756434 + AluSx SINE Alu 1 299 -13 184 163 0 70 chr9 94515912 94515955 -47755489 - MIR SINE MIR -107 155 116 391 293 70 48 chr9 94516572 94516810 -47754634 + L1ME3A LINE L1 5719 5933 -188 225 226 0 19 chr9 94516812 94516865 -47754579 + L1ME3A LINE L1 5909 5960 -202 264 206 98 54 chr9 94516930 94517022 -47754422 + L1ME3A LINE L1 6075 6170 0 21 71 0 0 chr9 94517123 94517165 -47754279 + AT_rich Low_complexity Low_complexity 1 42 0 2331 86 13 3 chr9 94519888 94520192 -47751252 + AluSp SINE Alu 1 307 -6 258 292 94 10 chr9 94520712 94520799 -47750645 + L1ME4a LINE L1 5855 5933 -188 1117 230 145 7 chr9 94520799 94521103 -47750341 + MER7A DNA MER2_type 1 344 -2 258 292 94 10 chr9 94521103 94521217 -47750227 + L1ME4a LINE L1 5933 6073 -48 431 274 8 8 chr9 94523044 94523168 -47748276 - L1ME LINE L1 -399 5722 5599 310 254 116 0 chr9 94523177 94523315 -47748129 - L1ME4a LINE L1 -1 6120 5967 22 35 0 0 chr9 94523411 94523440 -47748004 + AT_rich Low_complexity Low_complexity 1 29 0 237 286 61 10 chr9 94523898 94523996 -47747448 + L3 LINE CR1 700 802 -775 1983 122 58 0 chr9 94525281 94525559 -47745885 + AluSx SINE Alu 1 294 -18 2271 97 7 0 chr9 94525634 94525941 -47745503 + AluSx SINE Alu 3 312 0 238 269 39 0 chr9 94526563 94526641 -47744803 + MIR SINE MIR 73 153 -109 225 354 0 0 chr9 94526684 94526749 -47744695 - MIR SINE MIR -79 183 119 239 319 33 11 chr9 94528066 94528157 -47743287 + MIR SINE MIR 78 170 -92 914 195 251 18 chr9 94528399 94528549 -47742895 - Charlie1 DNA MER1_type -2 2759 2645 2525 84 0 0 chr9 94528549 94528858 -47742586 + AluSx SINE Alu 1 309 -3 914 195 251 18 chr9 94528858 94529045 -47742399 - Charlie1 DNA MER1_type -116 2645 2343 1888 127 34 28 chr9 94529187 94529478 -47741966 + AluJb SINE Alu 1 293 -19 2258 100 7 0 chr9 94529486 94529776 -47741668 + AluSg SINE Alu 1 292 -18 352 181 39 110 chr9 94530104 94530171 -47741273 - MER97a DNA MER1_type? -716 178 123 1833 158 3 14 chr9 94530171 94530462 -47740982 + AluJb SINE Alu 2 289 -23 352 181 39 110 chr9 94530462 94530521 -47740923 - MER97a DNA MER1_type? -771 123 61 2210 117 10 0 chr9 94530578 94530877 -47740567 + AluSx SINE Alu 1 302 -10 407 197 0 0 chr9 94530951 94531022 -47740422 + MLT1A2 LTR MaLR 293 363 -11 205 264 19 0 chr9 94531119 94531172 -47740272 + GA-rich Low_complexity Low_complexity 3 56 0 2399 87 0 3 chr9 94531217 94531517 -47739927 + AluSc SINE Alu 1 299 -10 1580 184 46 46 chr9 94531626 94532186 -47739258 + L1MD3 LINE L1 7302 7991 0 349 337 87 30 chr9 94532200 94532247 -47739197 + L1MB3 LINE L1 5389 5432 -2376 2298 112 7 0 chr9 94532247 94532550 -47738894 + AluSx SINE Alu 1 305 -7 349 337 87 30 chr9 94532550 94532802 -47738642 + L1MB3 LINE L1 5432 5705 -2103 209 71 0 0 chr9 94532857 94532885 -47738559 - MER5A DNA MER1_type -118 71 44 2557 72 0 3 chr9 94533113 94533420 -47738024 - AluSg SINE Alu -4 306 1 2440 80 7 0 chr9 94533519 94533818 -47737626 - AluY SINE Alu -10 301 1 925 205 55 10 chr9 94534326 94534526 -47736918 - MSTD LTR MaLR -8 388 180 677 159 6 96 chr9 94535104 94535162 -47736282 - MSTD LTR MaLR -285 143 81 2296 126 0 0 chr9 94535162 94535464 -47735980 - AluSx SINE Alu -10 302 1 677 159 6 96 chr9 94535464 94535562 -47735882 - MSTD LTR MaLR -347 81 1 1539 191 27 24 chr9 94535873 94536167 -47735277 + AluJo SINE Alu 4 298 -14 1345 134 8 38 chr9 94536172 94536382 -47735062 + L1MB3 LINE L1 5928 6130 -53 2162 88 63 3 chr9 94536382 94536666 -47734778 + AluSq SINE Alu 1 301 -12 1345 134 8 38 chr9 94536666 94536717 -47734727 + L1MB3 LINE L1 6130 6181 -2 325 319 108 30 chr9 94538794 94538960 -47732484 + L1MC/D LINE L1 5474 5652 -2156 424 184 11 23 chr9 94539002 94539089 -47732355 - MER20 DNA MER1_type 0 219 134 1216 210 128 66 chr9 94539118 94539177 -47732267 + MLT2B1 LTR ERVL 72 126 -394 1857 146 32 46 chr9 94539177 94539547 -47731897 - MLT1A1 LTR MaLR 0 365 1 1216 210 128 66 chr9 94539547 94539910 -47731534 + MLT2B1 LTR ERVL 126 520 0 555 224 30 8 chr9 94539910 94540044 -47731400 - MER20 DNA MER1_type -80 139 3 2592 63 0 0 chr9 94540206 94540506 -47730938 + AluY SINE Alu 1 300 -11 2293 117 3 0 chr9 94540813 94541120 -47730324 + AluSx SINE Alu 1 308 -4 2209 120 0 19 chr9 94541377 94541686 -47729758 - AluSx SINE Alu -9 303 1 338 197 14 0 chr9 94541742 94541813 -47729631 + L1ME1 LINE L1 4700 4771 -1375 1743 155 75 0 chr9 94541818 94542096 -47729348 + AluJo SINE Alu 1 299 -13 2228 108 3 0 chr9 94542127 94542424 -47729020 + AluSg SINE Alu 1 298 -12 966 163 11 28 chr9 94542430 94542608 -47728836 + FRAM SINE Alu 2 176 0 888 258 127 48 chr9 94542681 94542888 -47728556 + L1ME1 LINE L1 5276 5465 -699 2097 120 21 0 chr9 94542888 94543172 -47728272 + AluSx SINE Alu 5 294 -18 888 258 127 48 chr9 94543172 94543541 -47727903 + L1ME1 LINE L1 5465 5898 -266 561 226 155 0 chr9 94543550 94543731 -47727713 + L1ME1 LINE L1 5953 6161 -5 1650 143 6 93 chr9 94543756 94543884 -47727560 + AluJo SINE Alu 1 139 -179 1913 150 3 3 chr9 94543884 94544177 -47727267 - AluJb SINE Alu -17 295 3 2208 73 7 36 chr9 94544183 94544484 -47726960 - AluY SINE Alu -19 292 1 1650 143 6 93 chr9 94544484 94544694 -47726750 + AluJo SINE Alu 144 318 0 277 240 48 39 chr9 94544707 94544811 -47726633 + L1ME3A LINE L1 5473 5577 -2208 233 313 152 9 chr9 94544887 94545098 -47726346 + L1ME3A LINE L1 5694 5934 -236 2335 97 0 3 chr9 94545098 94545396 -47726048 + AluY SINE Alu 1 297 -14 2179 108 3 0 chr9 94545645 94545933 -47725511 - AluSx SINE Alu -23 289 1 2434 78 0 0 chr9 94546560 94546853 -47724591 + AluY SINE Alu 1 293 -18 308 138 17 0 chr9 94546901 94546959 -47724485 + L1M4 LINE L1 2336 2394 -4002 231 118 0 0 chr9 94546959 94546993 -47724451 + L1M4 LINE L1 5515 5548 -695 4959 166 131 20 chr9 94546998 94547180 -47724264 - L1MCb LINE L1 -4273 2291 2131 2438 88 7 0 chr9 94547180 94547486 -47723958 - AluY SINE Alu -3 308 1 4959 166 131 20 chr9 94547486 94548695 -47722749 - L1MCb LINE L1 -4433 2131 660 2208 112 0 0 chr9 94548695 94549004 -47722440 - AluSg SINE Alu 0 309 1 4959 166 131 20 chr9 94549004 94549392 -47722052 - L1MCb LINE L1 -5904 660 316 2092 234 46 58 chr9 94549410 94549925 -47721519 - L1M4 LINE L1 -2056 4090 3570 2329 98 3 10 chr9 94549925 94550230 -47721214 - AluSp SINE Alu -10 303 1 2092 234 46 58 chr9 94550230 94550587 -47720857 - L1M4 LINE L1 -2576 3570 3227 2073 138 16 3 chr9 94550587 94550891 -47720553 - AluSx SINE Alu -4 308 1 13283 205 31 83 chr9 94550891 94551973 -47719471 - L1P4 LINE L1 -673 6143 5007 2317 122 0 0 chr9 94551973 94552285 -47719159 - AluSx SINE Alu 0 312 1 13283 205 31 83 chr9 94552285 94553189 -47718255 - L1P4 LINE L1 -1809 5007 4058 210 37 0 0 chr9 94553189 94553216 -47718228 + (TTG)n Simple_repeat Simple_repeat 2 28 0 13283 205 31 83 chr9 94553216 94553724 -47717720 - L1P4 LINE L1 -2758 4058 3525 2383 25 0 0 chr9 94553724 94554000 -47717444 - L1PA4 LINE L1 0 6155 5880 13283 205 31 83 chr9 94554000 94554964 -47716480 - L1P4 LINE L1 -3291 3525 2513 716 160 0 0 chr9 94554964 94555070 -47716374 - AluJb SINE Alu -205 107 2 13283 205 31 83 chr9 94555070 94556659 -47714785 - L1P4 LINE L1 -4303 2513 1259 1126 128 133 34 chr9 94556714 94556948 -47714496 - Tigger2 DNA MER2_type 0 2718 2462 3822 139 41 15 chr9 94557011 94557687 -47713757 - Tigger2 DNA MER2_type -1978 740 47 1962 128 24 3 chr9 94557690 94557986 -47713458 + AluJb SINE Alu 1 302 -10 2028 163 0 0 chr9 94557989 94558290 -47713154 + AluJb SINE Alu 1 301 -11 2601 220 70 34 chr9 94558302 94559187 -47712257 - L1MCa LINE L1 -1070 5356 4440 957 161 84 0 chr9 94559241 94559396 -47712048 - AluJo SINE Alu -144 168 1 5506 255 40 31 chr9 94559405 94560023 -47711421 - L1MCa LINE L1 -1987 4439 3828 2381 88 0 3 chr9 94560023 94560319 -47711125 + AluSq SINE Alu 2 296 -17 5506 255 40 31 chr9 94560319 94560646 -47710798 - L1MCa LINE L1 -2598 3828 3506 2064 92 13 56 chr9 94560646 94560952 -47710492 + AluY SINE Alu 1 293 -18 5506 255 40 31 chr9 94560952 94561116 -47710328 - L1MCa LINE L1 -2920 3506 3345 2523 71 0 3 chr9 94561116 94561427 -47710017 - AluY SINE Alu -1 310 1 5506 255 40 31 chr9 94561427 94562225 -47709219 - L1MCa LINE L1 -3081 3345 2556 1291 194 85 96 chr9 94562225 94562662 -47708782 + MSTB1 LTR MaLR 1 432 0 5506 255 40 31 chr9 94562662 94562698 -47708746 - L1MCa LINE L1 -3870 2556 2522 2315 105 7 0 chr9 94562698 94562994 -47708450 - AluSx SINE Alu -14 298 1 786 170 18 25 chr9 94563048 94563225 -47708219 - L1MCa LINE L1 -3980 2446 2288 1158 193 75 97 chr9 94563225 94563281 -47708163 - MLT1A1 LTR MaLR 0 365 309 2541 65 3 0 chr9 94563281 94563587 -47707857 - AluY SINE Alu -4 307 1 1158 193 75 97 chr9 94563587 94563903 -47707541 - MLT1A1 LTR MaLR -56 309 1 2265 199 51 11 chr9 94563903 94564375 -47707069 - MLT1A1-int LTR MaLR 0 1735 1245 786 170 18 25 chr9 94563903 94563922 -47707522 - L1MCa LINE L1 -4138 2288 2270 * 1375 176 34 121 chr9 94564479 94564989 -47706455 - MLT1A1-int LTR MaLR -653 1082 415 639 88 0 0 chr9 94564991 94565082 -47706362 + AluY SINE Alu 216 306 -5 633 188 8 0 chr9 94565086 94565203 -47706241 - MLT1A1-int LTR MaLR -1328 407 290 690 207 83 0 chr9 94565208 94565377 -47706067 - L1MCa LINE L1 -6226 200 18 * 1941 255 71 94 chr9 94565376 94566708 -47704736 - L1 LINE L1 -2636 3510 2209 413 257 106 41 chr9 94566764 94567009 -47704435 + L1ME3A LINE L1 5905 6165 -5 312 267 38 19 chr9 94567169 94567274 -47704170 + L1ME3A LINE L1 6059 6165 -5 407 272 241 5 chr9 94567370 94567561 -47703883 - MIR SINE MIR -7 255 20 21 0 0 0 chr9 94569476 94569497 -47701947 + AT_rich Low_complexity Low_complexity 1 21 0 222 128 0 0 chr9 94573137 94573176 -47698268 + (CAGGG)n Simple_repeat Simple_repeat 3 41 0 201 217 43 72 chr9 94580715 94580784 -47690660 + MIR SINE MIR 111 177 -85 227 225 42 0 chr9 94580803 94580874 -47690570 + L1MB7 LINE L1 5537 5610 -568 2546 172 47 2 chr9 94580878 94581384 -47690060 + L1MB7 LINE L1 5647 6175 -9 575 216 93 5 chr9 94581514 94581708 -47689736 - MER20 DNA MER1_type -2 217 7 200 189 0 0 chr9 94583583 94583620 -47687824 + MIR SINE MIR 110 146 -62 288 260 94 39 chr9 94585085 94585212 -47686232 - MIR3 SINE MIR -68 140 7 192 77 0 0 chr9 94589137 94589163 -47682281 + (A)n Simple_repeat Simple_repeat 1 26 0 762 263 88 9 chr9 94589463 94589782 -47681662 + L1ME3A LINE L1 493 836 -5560 1441 248 106 42 chr9 94589789 94590600 -47680844 + L1ME3A LINE L1 1002 1864 -4532 * 2083 199 25 15 chr9 94590592 94590917 -47680527 + L1ME3A LINE L1 4637 4970 -1245 2123 89 43 7 chr9 94590917 94591198 -47680246 + AluSg SINE Alu 1 291 -19 2083 199 25 15 chr9 94591198 94591345 -47680099 + L1ME3A LINE L1 4970 5114 -1101 2552 55 0 0 chr9 94591347 94591640 -47679804 + AluY SINE Alu 1 293 -18 721 220 60 35 chr9 94591655 94591887 -47679557 + L1ME3A LINE L1 5809 6046 -193 2169 140 0 6 chr9 94591891 94592205 -47679239 + AluSx SINE Alu 1 312 0 3468 108 6 130 chr9 94593667 94594392 -47677052 + MER41B LTR ERV1 1 635 0 257 244 47 35 chr9 94594833 94594919 -47676525 + MIR SINE MIR 114 200 -62 246 256 73 0 chr9 94595748 94595830 -47675614 + MIR SINE MIR 33 120 -142 422 289 96 86 chr9 94597952 94598360 -47673084 + L1ME3 LINE L1 2830 3241 -2974 368 326 58 7 chr9 94599606 94599744 -47671700 + L1ME3 LINE L1 4438 4582 -1633 2040 179 128 27 chr9 94599936 94600036 -47671408 - L1MB7 LINE L1 -23 6161 6072 2543 75 3 0 chr9 94600036 94600344 -47671100 - AluY SINE Alu -2 309 1 2040 179 128 27 chr9 94600344 94600845 -47670599 - L1MB7 LINE L1 -112 6072 5447 1786 162 7 20 chr9 94600854 94601156 -47670288 - AluJb SINE Alu -14 298 1 207 345 42 25 chr9 94601195 94601314 -47670130 - MIR SINE MIR -38 224 104 546 279 75 19 chr9 94601412 94601694 -47669750 + L1ME3 LINE L1 5313 5609 -624 687 316 109 8 chr9 94601778 94602180 -47669264 + L1ME3 LINE L1 5786 6228 -3 2402 88 0 7 chr9 94602221 94602529 -47668915 + AluSc SINE Alu 1 306 -3 2363 91 7 7 chr9 94603911 94604219 -47667225 + AluSx SINE Alu 1 308 -4 303 239 57 23 chr9 94606067 94606155 -47665289 - MER5B DNA MER1_type -71 107 17 262 375 19 0 chr9 94606463 94606567 -47664877 - MIR SINE MIR -67 195 90 10557 149 65 41 chr9 94607843 94608568 -47662876 + L1MC3 LINE L1 5521 6227 -1558 1664 109 9 0 chr9 94608568 94608789 -47662655 - AluSg/x SINE Alu -6 304 82 1963 138 25 0 chr9 94608792 94609105 -47662339 - AluSx SINE Alu 0 312 1 10557 149 65 41 chr9 94609105 94609468 -47661976 + L1MC3 LINE L1 6228 6581 -1204 2436 91 0 0 chr9 94609468 94609766 -47661678 - AluSq SINE Alu -15 298 1 10557 149 65 41 chr9 94609766 94610147 -47661297 + L1MC3 LINE L1 6581 6951 -834 1511 201 45 7 chr9 94610147 94610435 -47661009 + AluJb SINE Alu 1 299 -13 10557 149 65 41 chr9 94610435 94611170 -47660274 + L1MC3 LINE L1 6951 7785 0 2567 65 0 3 chr9 94611193 94611500 -47659944 - AluY SINE Alu -5 306 1 2226 76 0 4 chr9 94611544 94611821 -47659623 + AluY SINE Alu 21 296 -15 238 152 22 0 chr9 94612191 94612237 -47659207 + L1MC/D LINE L1 5403 5449 -715 8716 41 2 2 chr9 94612240 94613311 -47658133 + MER11C LTR ERVK 1 1071 0 227 160 20 0 chr9 94613587 94613637 -47657807 - MIR SINE MIR -73 135 85 2676 43 0 0 chr9 94613922 94614222 -47657222 - AluY SINE Alu -11 300 1 2355 95 13 0 chr9 94614252 94614557 -47656887 + AluSg SINE Alu 1 309 -1 1914 142 10 3 chr9 94614713 94615001 -47656443 + AluSx SINE Alu 21 310 -2 316 280 16 47 chr9 94615013 94615206 -47656238 + L1MC5 LINE L1 7528 7714 -247 1256 79 0 67 chr9 94615206 94615384 -47656060 + AluY SINE Alu 132 297 -14 2290 95 0 0 chr9 94615583 94615894 -47655550 + AluSx SINE Alu 1 311 0 253 0 0 0 chr9 94615866 94615921 -47655523 + (TAA)n Simple_repeat Simple_repeat 2 56 0 2441 90 0 0 chr9 94615931 94616230 -47655214 + AluSx SINE Alu 1 299 -13 2533 66 0 10 chr9 94616230 94616533 -47654911 + AluSp SINE Alu 1 300 -13 726 176 8 0 chr9 94616538 94616669 -47654775 + FLAM_C SINE Alu 1 132 -1 23 0 0 0 chr9 94616669 94616692 -47654752 + AT_rich Low_complexity Low_complexity 1 23 0 223 290 47 56 chr9 94618172 94618279 -47653165 - MIR3 SINE MIR -11 197 92 277 298 134 29 chr9 94619910 94620081 -47651363 + L1MC/D LINE L1 5436 5624 -2184 250 296 68 0 chr9 94620099 94620187 -47651257 - MIR SINE MIR -109 153 60 385 284 54 14 chr9 94621091 94621239 -47650205 - MIR SINE MIR -61 147 33 23 0 0 0 chr9 94621877 94621900 -47649544 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 94622119 94622140 -47649304 + GC_rich Low_complexity Low_complexity 1 21 0 249 33 0 0 chr9 94622463 94622493 -47648951 + (CCG)n Simple_repeat Simple_repeat 2 31 0 31 68 0 0 chr9 94622502 94622561 -47648883 + GC_rich Low_complexity Low_complexity 1 59 0 25 0 0 0 chr9 94622606 94622631 -47648813 + GC_rich Low_complexity Low_complexity 1 25 0 2338 192 132 2 chr9 94623262 94623831 -47647613 - MER73 LTR ERVL -1 643 1 258 143 95 0 chr9 94623924 94623987 -47647457 - L1MD3 LINE L1 -242 7753 7685 1838 250 116 8 chr9 94624001 94624268 -47647176 - L1MC4 LINE L1 -533 7509 7272 2307 85 9 38 chr9 94624268 94624586 -47646858 - AluSc SINE Alu 0 309 1 1838 250 116 8 chr9 94624586 94624957 -47646487 - L1MC4 LINE L1 -770 7272 6802 205 0 0 0 chr9 94625178 94625203 -47646241 - MIR SINE MIR -103 105 81 189 284 54 14 chr9 94625513 94625587 -47645857 - L2 LINE L2 -249 3064 2988 254 317 30 10 chr9 94625650 94625751 -47645693 - MIR SINE MIR -1 261 159 601 242 27 47 chr9 94625830 94626103 -47645341 - LTR1 LTR ERV1 -562 223 1 238 278 170 22 chr9 94626103 94626326 -47645118 + L2 LINE L2 2606 2861 -453 3060 131 67 49 chr9 94626336 94626496 -47644948 - MER4B LTR ERV1 0 610 454 3970 122 8 17 chr9 94626496 94626686 -47644758 + MER41B LTR ERV1 1 191 -444 2331 90 0 7 chr9 94626686 94626985 -47644459 + AluSx SINE Alu 1 297 -15 3970 122 8 17 chr9 94626985 94627435 -47644009 + MER41B LTR ERV1 191 635 0 3060 131 67 49 chr9 94627435 94627869 -47643575 - MER4B LTR ERV1 -156 454 5 231 268 21 52 chr9 94627912 94628009 -47643435 + L2 LINE L2 3131 3224 -89 2075 110 10 45 chr9 94628642 94628950 -47642494 + AluSx SINE Alu 1 297 -15 1736 115 18 40 chr9 94629018 94629296 -47642148 + PABL_B LTR ERV1 1 272 -395 1520 106 0 0 chr9 94629326 94629514 -47641930 - AluSx SINE Alu -122 190 3 1544 120 12 19 chr9 94629516 94629774 -47641670 + PABL_B LTR ERV1 412 667 0 575 289 30 35 chr9 94629796 94630028 -47641416 - MIR SINE MIR -10 252 22 2206 163 34 73 chr9 94630481 94630639 -47640805 - L1MB4 LINE L1 -297 5883 5720 2421 87 7 0 chr9 94630639 94630937 -47640507 - AluY SINE Alu -11 300 1 2206 163 34 73 chr9 94630937 94631196 -47640248 - L1MB4 LINE L1 -460 5720 5490 2321 86 0 0 chr9 94631196 94631509 -47639935 + AluY SINE Alu 1 313 0 2206 163 34 73 chr9 94631509 94631649 -47639795 - L1MB4 LINE L1 -690 5490 5346 982 247 68 19 chr9 94631676 94632000 -47639444 - L1M4b LINE L1 -5240 1619 1280 2026 163 10 0 chr9 94632467 94632773 -47638671 + AluSx SINE Alu 1 309 -3 2027 66 105 35 chr9 94632861 94633147 -47638297 + AluY SINE Alu 1 306 -5 234 91 0 0 chr9 94633300 94633333 -47638111 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 1867 183 0 0 chr9 94633333 94633634 -47637810 - AluJb SINE Alu -11 301 1 247 238 0 0 chr9 94633641 94633704 -47637740 - L1M4b LINE L1 -6383 472 410 2732 45 0 0 chr9 94633732 94634042 -47637402 - AluY SINE Alu -1 310 1 624 138 110 0 chr9 94634129 94634238 -47637206 - AluJb SINE Alu -187 125 5 2186 63 63 11 chr9 94634271 94634558 -47636886 + AluY SINE Alu 1 302 -9 1501 211 43 116 chr9 94634563 94635451 -47635993 + L1ME1 LINE L1 5188 5942 -224 2415 93 3 0 chr9 94635451 94635761 -47635683 - AluY SINE Alu 0 311 1 1501 211 43 116 chr9 94635761 94635860 -47635584 + L1ME1 LINE L1 5942 6047 -119 2417 92 3 0 chr9 94635860 94636164 -47635280 - AluSp SINE Alu -6 307 3 2526 73 7 0 chr9 94636195 94636497 -47634947 + AluY SINE Alu 1 304 -7 1291 185 33 37 chr9 94636502 94636772 -47634672 + L1M4 LINE L1 600 868 -5674 1654 195 66 8 chr9 94636772 94637207 -47634237 + MLT2C1 LTR ERVL 1 464 0 2219 263 47 53 chr9 94637207 94637267 -47634177 + ERVL LTR ERVL 1 60 -5594 2220 133 0 9 chr9 94637267 94637582 -47633862 - AluSx SINE Alu 0 312 1 2219 263 47 53 chr9 94637582 94637823 -47633621 + ERVL LTR ERVL 60 301 -5353 1411 203 117 14 chr9 94637823 94638182 -47633262 + MSTD LTR MaLR 1 396 0 2219 263 47 53 chr9 94638182 94638494 -47632950 + ERVL LTR ERVL 301 613 -5041 2253 151 23 21 chr9 94638494 94638925 -47632519 + MSTB1 LTR MaLR 1 432 0 2219 263 47 53 chr9 94638925 94639286 -47632158 + ERVL LTR ERVL 613 996 -4658 7970 209 20 6 chr9 94639288 94640854 -47630590 + ERVL LTR ERVL 1113 2700 -3064 1589 133 16 0 chr9 94641062 94641310 -47630134 - LOR1b LTR ERV1 0 461 210 1782 138 4 34 chr9 94641337 94641605 -47629839 - AluSx SINE Alu -52 260 1 1229 221 9 35 chr9 94641663 94641815 -47629629 - L1MEc LINE L1 -3314 2901 2746 2312 101 0 20 chr9 94641815 94642121 -47629323 + AluSq SINE Alu 1 300 -13 2546 47 14 0 chr9 94642122 94642418 -47629026 + AluY SINE Alu 2 301 -10 1229 221 9 35 chr9 94642418 94642602 -47628842 - L1MEc LINE L1 -3468 2747 2572 * 3776 250 79 74 chr9 94642583 94642655 -47628789 - L1MEc LINE L1 -4570 1645 1575 2447 59 0 26 chr9 94642655 94642958 -47628486 + AluY SINE Alu 1 295 -16 3776 250 79 74 chr9 94642958 94643288 -47628156 - L1MEc LINE L1 -4640 1575 1248 2274 101 17 3 chr9 94643288 94643584 -47627860 - AluSx SINE Alu -12 300 1 3776 250 79 74 chr9 94643584 94643743 -47627701 - L1MEc LINE L1 -4967 1248 1091 805 163 230 0 chr9 94643743 94643921 -47627523 - MER20 DNA MER1_type 0 219 1 3776 250 79 74 chr9 94643921 94644724 -47626720 - L1MEc LINE L1 -5124 1091 476 2068 133 0 9 chr9 94644724 94645039 -47626405 - AluSx SINE Alu 0 312 1 3776 250 79 74 chr9 94645039 94645508 -47625936 - L1MEc LINE L1 -5739 476 11 2430 44 6 60 chr9 94645579 94645894 -47625550 + AluY SINE Alu 1 298 -13 2252 89 4 0 chr9 94646128 94646454 -47624990 + AluSc SINE Alu 1 327 0 950 151 20 108 chr9 94647372 94647623 -47623821 - MLT1B LTR MaLR -8 379 138 23 33 0 0 chr9 94647627 94647657 -47623787 + AT_rich Low_complexity Low_complexity 1 30 0 1822 144 19 0 chr9 94647658 94647806 -47623638 - AluSx SINE Alu -29 283 126 2160 112 7 3 chr9 94647806 94648109 -47623335 - AluY SINE Alu -7 304 1 1822 144 19 0 chr9 94648109 94648230 -47623214 - AluSx SINE Alu -186 126 9 5235 244 52 58 chr9 94648314 94650135 -47621309 + MER21-int LTR ERV1 1684 3543 -648 1253 108 0 0 chr9 94650153 94650310 -47621134 - AluSg SINE Alu -153 157 1 874 276 15 19 chr9 94650311 94650579 -47620865 + MER21-int LTR ERV1 3538 3804 -387 1367 192 10 38 chr9 94650618 94650910 -47620534 + MER21-int LTR ERV1 3815 4098 -93 2308 97 7 0 chr9 94651566 94651864 -47619580 - AluSq SINE Alu -13 300 1 2309 94 0 3 chr9 94652407 94652704 -47618740 - AluSg SINE Alu -14 296 1 335 288 104 0 chr9 94655260 94655385 -47616059 + MIR SINE MIR 90 227 -35 244 254 33 74 chr9 94655622 94655744 -47615700 - MIR SINE MIR -5 257 141 569 203 24 16 chr9 94657067 94657190 -47614254 - LTR51 LTR ERV1 0 671 548 * 1661 197 13 3 chr9 94657161 94657476 -47613968 - MER65C LTR ERV1 -116 345 28 3673 69 27 0 chr9 94657476 94657953 -47613491 + L1PA8 LINE L1 5683 6172 0 210 37 0 0 chr9 94657981 94658008 -47613436 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 240 94 0 0 chr9 94658008 94658040 -47613404 - MER65C LTR ERV1 -429 32 1 2240 104 3 7 chr9 94658247 94658556 -47612888 - AluSg SINE Alu -2 308 1 2045 171 32 5 chr9 94658712 94659092 -47612352 - MLT1B LTR MaLR 0 390 1 1327 138 9 14 chr9 94659510 94659728 -47611716 - L1PB3 LINE L1 -5 6149 5933 243 0 0 0 chr9 94660553 94660580 -47610864 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 2528 58 3 0 chr9 94660651 94660960 -47610484 - AluY SINE Alu -1 310 1 416 184 11 11 chr9 94661533 94661712 -47609732 + (TG)n Simple_repeat Simple_repeat 1 179 0 256 156 49 30 chr9 94661813 94662048 -47609396 + (TG)n Simple_repeat Simple_repeat 1 239 0 374 129 54 14 chr9 94662061 94662208 -47609236 + (TG)n Simple_repeat Simple_repeat 1 153 0 197 193 56 6 chr9 94662249 94662410 -47609034 + (TG)n Simple_repeat Simple_repeat 1 169 0 219 213 27 27 chr9 94662431 94662506 -47608938 + (TG)n Simple_repeat Simple_repeat 2 76 0 444 190 46 35 chr9 94662524 94662698 -47608746 + (TG)n Simple_repeat Simple_repeat 2 177 0 234 121 44 22 chr9 94662711 94662802 -47608642 + (TG)n Simple_repeat Simple_repeat 2 94 0 576 278 85 0 chr9 94663244 94663456 -47607988 - MIR SINE MIR 0 262 33 22 35 0 0 chr9 94664482 94664511 -47606933 + AT_rich Low_complexity Low_complexity 1 29 0 898 238 58 0 chr9 94664561 94664801 -47606643 + L1ME LINE L1 5143 5396 -750 34 42 0 0 chr9 94668553 94668601 -47602843 + AT_rich Low_complexity Low_complexity 1 48 0 242 143 31 61 chr9 94668642 94668740 -47602704 + (TTATA)n Simple_repeat Simple_repeat 1 95 0 421 284 62 6 chr9 94668927 94669103 -47602341 + L1ME LINE L1 5491 5676 -445 245 300 20 40 chr9 94670291 94670441 -47601003 - MER104 DNA Tc2 0 180 34 1555 194 10 7 chr9 94670542 94670835 -47600609 + AluJo SINE Alu 1 294 -18 505 276 20 13 chr9 94670838 94670990 -47600454 - MIR SINE MIR -10 252 100 21 36 0 0 chr9 94671802 94671830 -47599614 + AT_rich Low_complexity Low_complexity 1 28 0 195 295 46 55 chr9 94672795 94672924 -47598520 - MER5A DNA MER1_type 0 189 46 722 200 0 8 chr9 94672937 94673067 -47598377 + FLAM_A SINE Alu 1 129 -4 22 0 0 0 chr9 94673070 94673092 -47598352 + AT_rich Low_complexity Low_complexity 1 22 0 387 323 24 0 chr9 94674095 94674219 -47597225 + MER102b DNA MER1_type 214 340 -1 2330 86 0 0 chr9 94674506 94674797 -47596647 + AluY SINE Alu 1 291 -20 23 33 0 0 chr9 94675032 94675062 -47596382 + AT_rich Low_complexity Low_complexity 1 30 0 191 333 80 13 chr9 94675612 94675687 -47595757 - L2 LINE L2 -50 3222 3143 183 114 0 0 chr9 94676102 94676137 -47595307 + (T)n Simple_repeat Simple_repeat 1 35 0 390 91 0 0 chr9 94676428 94676483 -47594961 + (TTA)n Simple_repeat Simple_repeat 2 56 0 475 172 111 0 chr9 94677341 94677440 -47594004 - FLAM_C SINE Alu -3 140 31 2047 37 8 0 chr9 94678266 94678509 -47592935 - L1PA4 LINE L1 0 6155 5911 471 248 0 0 chr9 94678635 94678740 -47592704 + U6 snRNA snRNA 2 106 -1 22 56 0 0 chr9 94679829 94679865 -47591579 + AT_rich Low_complexity Low_complexity 1 36 0 2107 126 20 0 chr9 94680008 94680302 -47591142 + AluSx SINE Alu 1 300 -12 48 0 0 0 chr9 94680336 94680384 -47591060 + AT_rich Low_complexity Low_complexity 1 48 0 2375 175 11 11 chr9 94680649 94681083 -47590361 - Tigger2a DNA MER2_type 0 434 1 2037 141 3 0 chr9 94681450 94681747 -47589697 + AluSx SINE Alu 1 298 -14 29 28 0 0 chr9 94681813 94681849 -47589595 + AT_rich Low_complexity Low_complexity 1 36 0 230 250 67 0 chr9 94682785 94682845 -47588599 - MLT1L LTR MaLR -6 609 546 636 308 137 35 chr9 94682890 94683076 -47588368 - MLT1L LTR MaLR -167 448 282 2053 139 0 0 chr9 94683076 94683371 -47588073 - AluSc SINE Alu -14 295 1 636 308 137 35 chr9 94683371 94683587 -47587857 - MLT1L LTR MaLR -333 282 5 420 94 172 0 chr9 94683670 94683734 -47587710 - MER58A DNA MER1_type 0 224 150 702 271 7 0 chr9 94683793 94683944 -47587500 - MER58A DNA MER1_type 0 155 4 1212 233 31 21 chr9 94684434 94684721 -47586723 + AluJo SINE Alu 2 291 -11 1034 176 56 87 chr9 94684983 94685306 -47586138 + L1MC4 LINE L1 7730 8042 0 235 245 50 88 chr9 94685710 94685869 -47585575 + L1MC/D LINE L1 5740 5892 -1916 1524 189 0 25 chr9 94686248 94686528 -47584916 - AluJo SINE Alu -31 281 9 3953 193 65 4 chr9 94686595 94687301 -47584143 + L1MA4A LINE L1 3 751 -6098 2177 163 27 0 chr9 94687302 94687707 -47583737 + L1MA4A LINE L1 4883 5298 -1550 25 0 0 0 chr9 94687711 94687736 -47583708 + AT_rich Low_complexity Low_complexity 1 25 0 6747 62 11 43 chr9 94687736 94688710 -47582734 - SVA Other Other -11 1375 433 1049 94 11 66 chr9 94688728 94689015 -47582429 - SVA Other Other -520 866 596 1198 77 0 29 chr9 94689043 94689251 -47582193 - SVA Other Other -520 866 665 5770 67 21 53 chr9 94689278 94690114 -47581330 - SVA Other Other -524 862 53 189 0 0 0 chr9 94690114 94690135 -47581309 + (GGGAGA)n Simple_repeat Simple_repeat 3 23 0 5716 134 68 28 chr9 94690136 94690902 -47580542 + L1MA4A LINE L1 5285 6019 -986 2362 96 0 0 chr9 94690902 94691193 -47580251 + AluSx SINE Alu 3 293 -19 5716 134 68 28 chr9 94691193 94691393 -47580051 + L1MA4A LINE L1 6019 6210 -795 2505 121 89 43 chr9 94691393 94691863 -47579581 + LTR22B LTR ERVK 1 492 0 5716 134 68 28 chr9 94691863 94692538 -47578906 + L1MA4A LINE L1 6210 7003 -2 2612 71 0 0 chr9 94692701 94693009 -47578435 - AluY SINE Alu -3 308 1 3266 238 51 14 chr9 94693361 94694402 -47577042 - L1ME1 LINE L1 -5 6161 5083 183 80 0 0 chr9 94694402 94694427 -47577017 + (T)n Simple_repeat Simple_repeat 1 25 0 3320 71 27 63 chr9 94696192 94696670 -47574774 + L1PA13 LINE L1 5702 6162 -1 2519 60 0 3 chr9 94696679 94696981 -47574463 + AluSc SINE Alu 1 301 -8 2240 119 0 0 chr9 94697426 94697728 -47573716 + AluSx SINE Alu 1 302 -10 292 369 57 0 chr9 94697747 94697888 -47573556 + L1MC/D LINE L1 5506 5654 -2154 1693 161 10 26 chr9 94698032 94698336 -47573108 + AluJo SINE Alu 1 299 -13 209 205 0 0 chr9 94698354 94698393 -47573051 + (TATG)n Simple_repeat Simple_repeat 2 40 0 34 62 0 12 chr9 94699209 94699239 -47572205 + AT_rich Low_complexity Low_complexity 1 30 -49 1591 167 20 33 chr9 94699239 94699383 -47572061 + AluJo SINE Alu 1 145 -167 2276 97 0 13 chr9 94699383 94699683 -47571761 + AluSq SINE Alu 1 296 -17 1591 167 20 33 chr9 94699683 94699837 -47571607 + AluJo SINE Alu 145 295 -17 34 62 0 12 chr9 94699837 94699886 -47571558 + AT_rich Low_complexity Low_complexity 30 79 0 2171 114 0 7 chr9 94699960 94700259 -47571185 + AluSx SINE Alu 13 309 -3 2567 62 0 0 chr9 94700797 94701103 -47570341 - AluY SINE Alu -5 306 1 699 268 61 83 chr9 94701981 94702556 -47568888 + L1MEc LINE L1 1256 1817 -4579 621 229 90 11 chr9 94702720 94702999 -47568445 + L1MEc LINE L1 2403 2703 -3512 1779 142 0 69 chr9 94706267 94706619 -47564825 + AluSx SINE Alu 1 331 0 2340 89 3 0 chr9 94706641 94706934 -47564510 + AluSp SINE Alu 1 294 -19 203 217 60 0 chr9 94706972 94707055 -47564389 + (TA)n Simple_repeat Simple_repeat 1 88 0 1945 132 0 17 chr9 94707165 94707452 -47563992 + AluJo SINE Alu 1 282 -30 2044 153 3 0 chr9 94707462 94707762 -47563682 - AluSx SINE Alu -11 301 1 474 252 8 23 chr9 94707806 94707937 -47563507 - MIR SINE MIR -89 173 45 1988 115 0 70 chr9 94708245 94708558 -47562886 - AluSx SINE Alu -21 291 1 1626 174 100 3 chr9 94708916 94709227 -47562217 + MER58B DNA MER1_type 1 341 0 1369 94 12 2 chr9 94709945 94710190 -47561254 - AluYa5 SINE Alu -2 309 2 2382 101 0 0 chr9 94710191 94710498 -47560946 - AluSq SINE Alu -6 307 1 1275 226 79 2 chr9 94711036 94711465 -47559979 - LTR52-int LTR ERVL -3020 536 2 1305 211 137 3 chr9 94711476 94711818 -47559626 - LTR52 LTR ERVL -16 405 18 536 284 132 42 chr9 94711829 94712097 -47559347 + L1ME3A LINE L1 5386 5708 -462 2355 93 0 0 chr9 94712097 94712399 -47559045 + AluY SINE Alu 1 302 -9 536 284 132 42 chr9 94712399 94712538 -47558906 + L1ME3A LINE L1 5708 5833 -337 30 77 0 0 chr9 94713983 94714048 -47557396 + AT_rich Low_complexity Low_complexity 1 65 0 1024 167 27 66 chr9 94714103 94714392 -47557052 + L1MB8 LINE L1 5254 5553 -625 2360 65 0 10 chr9 94714392 94714685 -47556759 - AluY SINE Alu -21 290 1 1024 167 27 66 chr9 94714685 94714727 -47556717 + L1MB8 LINE L1 5553 6151 -27 1746 135 15 0 chr9 94715420 94715679 -47555765 - AluJb SINE Alu -10 302 40 256 265 112 66 chr9 94715858 94716145 -47555299 + L1MDa LINE L1 1293 1592 -4948 369 258 134 39 chr9 94716211 94716505 -47554939 + L1MDa LINE L1 2200 2542 -4179 2258 85 0 3 chr9 94716505 94716812 -47554632 + AluY SINE Alu 1 306 0 369 258 134 39 chr9 94716812 94716904 -47554540 + L1MDa LINE L1 2542 2624 -4097 * 572 272 67 91 chr9 94716888 94717230 -47554214 + L1ME LINE L1 1 334 -6206 2660 168 76 84 chr9 94717362 94717969 -47553475 - MER77 LTR ERV1 -3 602 1 2616 51 0 6 chr9 94717982 94718294 -47553150 + AluY SINE Alu 1 310 -1 2794 216 26 49 chr9 94718718 94719754 -47551690 + L1ME LINE L1 891 1904 -4636 5621 67 5 0 chr9 94720429 94721100 -47550344 + L1PA10 LINE L1 5494 6167 -1 719 269 134 60 chr9 94721768 94722215 -47549229 + MLT1J LTR MaLR 1 480 -31 259 272 116 14 chr9 94722312 94722459 -47548985 + L1ME LINE L1 2794 2955 -3585 300 91 0 0 chr9 94722690 94722734 -47548710 + (GA)n Simple_repeat Simple_repeat 2 45 0 938 130 8 0 chr9 94722819 94722950 -47548494 + FLAM_C SINE Alu 1 132 -11 763 263 30 30 chr9 94722951 94723282 -47548162 + L1ME LINE L1 5667 5997 -567 1710 160 0 21 chr9 94723286 94723573 -47547871 + AluJo SINE Alu 1 281 -31 6172 73 7 4 chr9 94723898 94724729 -47546715 + L1PA8 LINE L1 5236 6068 -104 937 61 43 0 chr9 94724729 94724844 -47546600 + AluSp SINE Alu 1 120 -193 858 113 0 30 chr9 94724844 94724858 -47546586 + L1PA7 LINE L1 6026 6039 -115 2059 101 0 17 chr9 94724858 94725186 -47546258 + AluY SINE Alu 1 323 0 858 113 0 30 chr9 94725186 94725303 -47546141 + L1PA7 LINE L1 6039 6154 0 759 241 6 0 chr9 94725403 94725561 -47545883 + MER77 LTR ERV1 443 601 -4 585 242 8 8 chr9 94725602 94725726 -47545718 - MLT1D LTR MaLR -97 408 285 526 197 221 0 chr9 94725726 94725853 -47545591 - MLT1D LTR MaLR -49 456 302 522 229 46 23 chr9 94726000 94726131 -47545313 + MIR SINE MIR 20 153 -109 2437 127 43 38 chr9 94726141 94726554 -47544890 - MSTB1 LTR MaLR 0 432 57 764 209 16 0 chr9 94726554 94726683 -47544761 - FLAM_A SINE Alu -1 132 2 2437 127 43 38 chr9 94726683 94726741 -47544703 - MSTB1 LTR MaLR -375 57 1 267 191 146 0 chr9 94726742 94726831 -47544613 + MIR SINE MIR 160 261 -1 429 269 42 39 chr9 94726840 94727100 -47544344 + HAL1 LINE L1 1930 2190 -317 894 108 0 8 chr9 94727101 94727221 -47544223 + AluJb SINE Alu 1 119 -193 195 42 0 0 chr9 94727221 94727245 -47544199 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 762 230 60 53 chr9 94727245 94727563 -47543881 + HAL1 LINE L1 2180 2499 -8 5925 241 67 26 chr9 94727690 94729396 -47542048 + L1MDa LINE L1 21 1797 -4743 1147 179 19 125 chr9 94729407 94729609 -47541835 + MLT1D LTR MaLR 12 159 -346 2347 84 3 7 chr9 94729609 94729919 -47541525 + AluSp SINE Alu 1 309 -4 1147 179 19 125 chr9 94729919 94730085 -47541359 + MLT1D LTR MaLR 159 341 -164 747 45 0 0 chr9 94730085 94730174 -47541270 + AluSp/q SINE Alu 217 305 -8 1243 215 34 37 chr9 94730176 94730502 -47540942 + MLT1D LTR MaLR 179 503 -2 775 105 49 56 chr9 94730516 94730659 -47540785 + L1MDa LINE L1 1799 1940 -4600 1395 192 76 25 chr9 94730659 94730807 -47540637 + MLT1B LTR MaLR 19 158 -232 216 0 0 0 chr9 94730807 94730831 -47540613 + (CAGG)n Simple_repeat Simple_repeat 2 25 0 1395 192 76 25 chr9 94730831 94731036 -47540408 + MLT1B LTR MaLR 158 390 0 1217 252 15 21 chr9 94731057 94731394 -47540050 + L1M4 LINE L1 3371 3705 -2441 * 1331 189 37 52 chr9 94731375 94731777 -47539667 + L1M4 LINE L1 3563 3958 -2188 418 301 19 0 chr9 94731784 94731887 -47539557 + MER5A DNA MER1_type 8 112 -77 2435 93 0 0 chr9 94731960 94732273 -47539171 - AluSq SINE Alu 0 313 1 290 310 17 0 chr9 94732868 94732984 -47538460 + L1ME LINE L1 5672 5789 -332 350 308 157 19 chr9 94734473 94734791 -47536653 + L1MDa LINE L1 2953 3314 -3226 3879 227 81 47 chr9 94735980 94737457 -47533987 + L1M4 LINE L1 2614 4139 -2007 1582 207 75 73 chr9 94737458 94737936 -47533508 + MER31A LTR ERV1 1 479 -6 1654 242 99 41 chr9 94737950 94738241 -47533203 + L1M4 LINE L1 4680 4953 -1193 2389 74 0 3 chr9 94738241 94738540 -47532904 + AluY SINE Alu 1 298 -13 1654 242 99 41 chr9 94738540 94738902 -47532542 + L1M4 LINE L1 4953 5371 -775 485 108 24 12 chr9 94738906 94738989 -47532455 + LTR56 LTR ERV1 1 84 -361 2407 72 0 0 chr9 94738997 94739288 -47532156 + AluY SINE Alu 9 299 -12 338 51 0 0 chr9 94739288 94739327 -47532117 + L1PA12 LINE L1 6119 6157 -11 2431 55 10 19 chr9 94739405 94739716 -47531728 + AluY SINE Alu 1 308 -3 210 37 0 0 chr9 94741039 94741066 -47530378 + (TG)n Simple_repeat Simple_repeat 2 28 0 1943 128 11 3 chr9 94741065 94741379 -47530065 - AluSx SINE Alu 0 316 1 882 193 6 0 chr9 94746082 94746258 -47525186 - MSTA-int LTR MaLR -1447 204 28 352 235 54 34 chr9 94746256 94746405 -47525039 + THE1-int LTR MaLR 466 617 -963 * 704 244 62 19 chr9 94746429 94746659 -47524785 - MSTA LTR MaLR -62 302 79 450 245 31 46 chr9 94746672 94746897 -47524547 + THE1-int LTR MaLR 907 1178 -402 276 214 18 0 chr9 94746895 94746951 -47524493 - MST-int LTR MaLR -616 1035 979 * 389 219 9 19 chr9 94747040 94747145 -47524299 - MSTA LTR MaLR -324 104 1 1454 230 3 32 chr9 94747145 94747489 -47523955 - MSTA-int LTR MaLR 0 1651 1318 331 246 0 0 chr9 94747496 94747557 -47523887 - MSTA LTR MaLR -273 155 95 336 220 80 40 chr9 94747626 94747726 -47523718 - MSTA LTR MaLR -324 104 1 6386 223 58 19 chr9 94747726 94749289 -47522155 - MSTA-int LTR MaLR 0 1651 28 569 230 26 26 chr9 94749287 94749439 -47522005 + THE1-int LTR MaLR 466 617 -963 * 1198 211 44 17 chr9 94749455 94749749 -47521695 - MSTA LTR MaLR -52 376 75 497 203 55 39 chr9 94749782 94749910 -47521534 + THE1-int LTR MaLR 1062 1191 -389 287 130 22 0 chr9 94749898 94749944 -47521500 - THE1-int LTR MaLR -613 967 921 * 399 261 8 67 chr9 94749962 94750096 -47521348 - MSTA LTR MaLR -302 126 1 1281 155 41 16 chr9 94750096 94750341 -47521103 - MSTA-int LTR MaLR 0 1651 1401 * 1395 165 8 0 chr9 94750338 94750586 -47520858 - MSTA-int LTR MaLR -1401 250 1 1503 217 50 25 chr9 94750603 94750962 -47520482 - MSTA LTR MaLR -60 368 1 1521 135 66 100 chr9 94752927 94753379 -47518065 + SN5 Other centromeric 1 437 -18 206 217 0 17 chr9 94753622 94753682 -47517762 + (TATG)n Simple_repeat Simple_repeat 1 59 0 280 242 0 19 chr9 94754067 94754176 -47517268 + HSAT5 Satellite Satellite 1 106 -7 277 258 16 0 chr9 94754197 94754259 -47517185 + HSAT5 Satellite Satellite 23 85 -1 345 234 40 19 chr9 94754461 94754646 -47516798 + HSAT5 Satellite Satellite 1 188 -1 974 222 238 20 chr9 94755208 94755654 -47515790 + L1MC4 LINE L1 6819 7361 -681 21 36 0 0 chr9 94755922 94755950 -47515494 + AT_rich Low_complexity Low_complexity 1 28 0 202 348 76 31 chr9 94756535 94756806 -47514638 - L2 LINE L2 -227 3045 2745 21 0 0 0 chr9 94757240 94757261 -47514183 + AT_rich Low_complexity Low_complexity 1 21 0 949 125 0 0 chr9 94757618 94757754 -47513690 + AluSc SINE Alu 1 136 -173 45650 32 4 1 chr9 94757761 94763728 -47507716 - L1PA3 LINE L1 -167 5988 8 3229 120 22 30 chr9 94763765 94763841 -47507603 - MER41B-int LTR ERV1 -3276 2670 2595 2012 106 0 35 chr9 94763841 94764153 -47507291 - AluSx SINE Alu -11 301 1 3229 120 22 30 chr9 94764153 94764584 -47506860 - MER41B-int LTR ERV1 -3351 2595 2167 878 180 0 39 chr9 94764580 94764758 -47506686 - MER41B-int LTR ERV1 -3929 2017 1847 * 3088 132 13 19 chr9 94764736 94765213 -47506231 - MER41B-int LTR ERV1 -4328 1618 1145 4359 129 37 16 chr9 94765215 94765397 -47506047 - MER41B-int LTR ERV1 -5127 819 642 1865 143 10 0 chr9 94765397 94765704 -47505740 + AluSx SINE Alu 1 310 -2 4359 129 37 16 chr9 94765704 94766377 -47505067 - MER41B-int LTR ERV1 -5304 642 1 1081 99 7 0 chr9 94766377 94766528 -47504916 - MER41B LTR ERV1 0 635 484 443 68 0 0 chr9 94766548 94766607 -47504837 + MER75B DNA T2_type 52 110 -133 1311 117 11 0 chr9 94766608 94766796 -47504648 - AluSx SINE Alu -122 190 1 308 29 0 0 chr9 94766797 94766832 -47504612 + MER1B DNA MER1_type 232 266 -73 2328 77 0 0 chr9 94767538 94767836 -47503608 - AluY SINE Alu -13 298 1 596 250 15 49 chr9 94768205 94768409 -47503035 - L1MC4 LINE L1 -1137 6905 6709 1664 264 92 36 chr9 94768418 94768471 -47502973 + L1MC4a LINE L1 5254 5303 -2505 1359 190 67 30 chr9 94768471 94768771 -47502673 + AluJo SINE Alu 1 311 -1 1664 264 92 36 chr9 94768771 94769392 -47502052 + L1MC4a LINE L1 5303 5966 -1842 188 259 222 0 chr9 94876254 94876335 -47395109 - L2 LINE L2 -5 3267 3169 557 310 87 33 chr9 94876368 94876645 -47394799 - L2 LINE L2 -557 2757 2496 2005 109 25 7 chr9 94876645 94876930 -47394514 + AluSx SINE Alu 3 292 -20 2385 75 3 0 chr9 94876930 94877236 -47394208 + AluSc SINE Alu 1 307 -2 557 310 87 33 chr9 94877236 94877441 -47394003 - L2 LINE L2 -817 2497 2248 21 36 0 0 chr9 94878727 94878755 -47392689 + AT_rich Low_complexity Low_complexity 1 28 0 5662 166 55 9 chr9 94878767 94880279 -47391165 + L1MC2 LINE L1 4755 6344 0 2429 74 3 3 chr9 94880313 94880623 -47390821 + AluSq SINE Alu 1 310 -3 363 288 22 22 chr9 94881292 94881431 -47390013 - MLT1L LTR MaLR -133 482 344 311 269 70 64 chr9 94882257 94882428 -47389016 - L1MC4 LINE L1 -367 7675 7504 1971 111 31 3 chr9 94882428 94882717 -47388727 - AluSx SINE Alu -15 297 1 232 333 11 0 chr9 94882942 94883029 -47388415 - MIR SINE MIR -116 146 59 2301 72 3 10 chr9 94884513 94884819 -47386625 + AluY SINE Alu 1 304 -7 402 74 0 0 chr9 94887213 94887267 -47384177 + (TG)n Simple_repeat Simple_repeat 2 55 0 666 222 17 17 chr9 94888446 94888626 -47382818 + MLT1D LTR MaLR 41 220 -285 229 200 46 31 chr9 94890939 94891004 -47380440 - MIR3 SINE MIR -36 172 107 198 0 0 0 chr9 94893532 94893554 -47377890 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 545 237 90 45 chr9 94893557 94893673 -47377771 - MER33 DNA MER1_type -2328 257 148 2357 79 0 0 chr9 94893673 94893965 -47377479 - AluSc SINE Alu -17 292 1 545 237 90 45 chr9 94893965 94894093 -47377351 - MER33 DNA MER1_type -2437 148 2 193 275 33 44 chr9 94896913 94897004 -47374440 - MIR SINE MIR -90 172 83 677 315 125 8 chr9 94898105 94898735 -47372709 + Charlie2 DNA MER1_type 2051 2786 -76 931 172 6 6 chr9 94898888 94899045 -47372399 - AluSg/x SINE Alu -23 287 131 2286 86 3 0 chr9 94899399 94899690 -47371754 - AluSq SINE Alu -21 292 1 1801 129 18 7 chr9 94901825 94902104 -47369340 + AluJo SINE Alu 1 282 -30 435 38 0 0 chr9 94902613 94902666 -47368778 + (TTGTG)n Simple_repeat Simple_repeat 5 57 0 229 304 223 13 chr9 94902672 94903126 -47368318 - HAL1 LINE L1 -795 1712 1164 1509 270 134 28 chr9 94903184 94903826 -47367618 - L1ME2 LINE L1 -6 6158 5422 2369 54 10 0 chr9 94903826 94904120 -47367324 - AluY SINE Alu -14 297 1 1509 270 134 28 chr9 94904120 94904371 -47367073 - L1ME2 LINE L1 -742 5422 5199 787 148 8 0 chr9 94904384 94904506 -47366938 - FLAM_A SINE Alu -10 123 1 360 285 83 28 chr9 94904658 94904802 -47366642 - HAL1 LINE L1 -1433 1074 923 196 282 51 26 chr9 94908429 94908507 -47362937 + L2 LINE L2 3007 3086 -186 196 103 0 0 chr9 94909057 94909086 -47362358 + MIR SINE MIR 120 148 -114 604 162 0 10 chr9 94909594 94909693 -47361751 + FLAM_A SINE Alu 42 139 -3 205 89 44 22 chr9 94909700 94909745 -47361699 + GA-rich Low_complexity Low_complexity 1 46 0 438 182 39 0 chr9 94909746 94909823 -47361621 + AluJo SINE Alu 121 200 -112 291 322 157 16 chr9 94910102 94910223 -47361221 + MIR SINE MIR 37 174 -88 489 330 48 58 chr9 94910972 94911035 -47360409 - L1MCa LINE L1 -4251 2356 2294 2183 92 3 0 chr9 94911035 94911342 -47360102 + AluSp SINE Alu 1 308 0 489 330 48 58 chr9 94911342 94911568 -47359876 - L1MCa LINE L1 -4313 2294 2069 405 276 95 72 chr9 94911596 94911805 -47359639 - L1MCa LINE L1 -4596 2011 1808 2227 110 0 0 chr9 94911805 94912131 -47359313 - AluSx SINE Alu 0 312 1 405 276 95 72 chr9 94912131 94912396 -47359048 - L1MCa LINE L1 -4799 1808 1327 1176 202 10 0 chr9 94912404 94912633 -47358811 - AluJo SINE Alu 0 306 76 1939 110 43 10 chr9 94912639 94912939 -47358505 - AluSx SINE Alu -2 310 1 911 291 96 63 chr9 94912939 94913461 -47357983 - L1MEd LINE L1 -4938 1181 643 328 83 17 0 chr9 94913567 94913627 -47357817 + Alu SINE Alu 242 302 0 2134 117 0 19 chr9 94913823 94914131 -47357313 + AluSx SINE Alu 1 302 -10 219 226 57 0 chr9 94915526 94915579 -47355865 - MIR SINE MIR -65 143 88 276 297 0 27 chr9 94917606 94917717 -47353727 - L1M4b LINE L1 -4916 2041 1934 613 267 94 13 chr9 94917802 94918173 -47353271 - L1M4b LINE L1 -5267 1871 1297 736 163 0 27 chr9 94918382 94918566 -47352878 + (TGAG)n Simple_repeat Simple_repeat 1 179 0 282 298 54 102 chr9 94925877 94926082 -47345362 - MIR SINE MIR -12 250 56 1809 152 3 10 chr9 94926732 94927022 -47344422 + AluSx SINE Alu 13 300 -12 461 132 0 0 chr9 94927022 94927098 -47344346 + AluSc SINE Alu 234 309 0 2130 138 16 24 chr9 94927111 94927482 -47343962 + L1MB7 LINE L1 5816 6183 -1 319 214 0 19 chr9 94928413 94928516 -47342928 + CT-rich Low_complexity Low_complexity 3 103 0 1724 128 0 8 chr9 94928525 94928768 -47342676 - AluSx SINE Alu -71 241 1 210 226 95 0 chr9 94929253 94929337 -47342107 + MER5B DNA MER1_type 29 120 -58 1245 109 0 31 chr9 94929564 94929746 -47341698 - AluSp SINE Alu -9 304 127 2110 122 6 6 chr9 94929746 94930058 -47341386 - AluSx SINE Alu 0 312 1 194 289 0 0 chr9 94930914 94930959 -47340485 - MIR SINE MIR -101 161 117 2056 91 7 24 chr9 94931245 94931542 -47339902 + AluSq SINE Alu 22 313 0 274 318 9 36 chr9 94931591 94931701 -47339743 - MIR SINE MIR -80 182 76 184 271 51 17 chr9 94931846 94931905 -47339539 + L3 LINE CR1 1405 1465 -112 328 305 8 34 chr9 94932285 94932403 -47339041 - MIR SINE MIR -88 174 60 765 239 34 0 chr9 94932679 94932855 -47338589 + MER63A DNA MER1_type 19 200 -10 181 268 124 21 chr9 94933253 94933350 -47338094 - L2 LINE L2 -168 3104 2998 823 173 0 0 chr9 94934032 94934165 -47337279 + AluJ SINE Alu 1 133 -179 391 303 9 50 chr9 94934982 94935200 -47336244 - L1MC5 LINE L1 -148 7813 7605 267 157 0 0 chr9 94935965 94936016 -47335428 + (TG)n Simple_repeat Simple_repeat 1 51 0 322 289 0 0 chr9 94936119 94936209 -47335235 + (TG)n Simple_repeat Simple_repeat 1 90 0 337 224 154 0 chr9 94937184 94937327 -47334117 - L1MEc LINE L1 -6025 371 207 347 289 67 34 chr9 94938215 94938364 -47333080 + L1ME2 LINE L1 5772 5925 -239 740 239 112 0 chr9 94940089 94940277 -47331167 - MER3 DNA MER1_type 0 209 1 751 206 47 29 chr9 94943241 94943411 -47328033 + AluJ SINE Alu 122 294 -18 377 231 10 10 chr9 94944486 94944590 -47326854 - L1MC4 LINE L1 -139 7903 7800 225 284 113 0 chr9 94944848 94944989 -47326455 - L1MC4a LINE L1 -505 7303 7147 292 196 185 33 chr9 94945194 94945286 -47326158 - MLT1F1 LTR MaLR -281 286 181 605 291 200 15 chr9 94945444 94945918 -47325526 - L1MC4 LINE L1 -1018 7024 6463 305 402 69 15 chr9 94946216 94946477 -47324967 - L3 LINE CR1 -1193 384 110 192 340 107 13 chr9 94947578 94947728 -47323716 - L2 LINE L2 -3139 175 12 2336 83 0 3 chr9 94948778 94949079 -47322365 - AluY SINE Alu -11 300 1 1278 103 11 0 chr9 94949213 94949398 -47322046 - AluSc SINE Alu -3 306 120 306 296 26 0 chr9 94949444 94949559 -47321885 + (CA)n Simple_repeat Simple_repeat 1 118 0 250 374 11 22 chr9 94949553 94949735 -47321709 + (CATG)n Simple_repeat Simple_repeat 1 180 0 * 267 366 0 15 chr9 94949606 94949740 -47321704 + (CATA)n Simple_repeat Simple_repeat 2 133 0 2163 109 0 7 chr9 94950088 94950392 -47321052 - AluSx SINE Alu -10 302 1 2151 111 0 25 chr9 94950405 94950721 -47320723 - AluSg SINE Alu -1 309 2 1693 160 8 0 chr9 94950770 94951033 -47320411 + AluJb SINE Alu 38 302 -10 21 36 0 0 chr9 94953086 94953114 -47318330 + AT_rich Low_complexity Low_complexity 1 28 0 2133 109 0 0 chr9 94953217 94953510 -47317934 - AluSx SINE Alu -7 305 13 269 272 25 19 chr9 94953914 94954140 -47317304 + GA-rich Low_complexity Low_complexity 1 227 0 2161 81 3 29 chr9 94955099 94955407 -47316037 - AluY SINE Alu -11 300 1 2026 98 25 3 chr9 94955409 94955694 -47315750 - AluSg SINE Alu -19 291 1 1960 135 0 16 chr9 94955694 94955998 -47315446 - AluSx SINE Alu -13 299 1 245 197 53 0 chr9 94956577 94956653 -47314791 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 313 218 29 17 chr9 94956682 94956856 -47314588 + (TCTA)n Simple_repeat Simple_repeat 1 176 0 242 200 180 0 chr9 94957376 94957426 -47314018 - L2 LINE L2 -14 3258 3200 210 348 11 0 chr9 94959928 94960017 -47311427 + MIR SINE MIR 48 137 -71 262 345 0 35 chr9 94960321 94960492 -47310952 + G-rich Low_complexity Low_complexity 3 167 0 198 227 136 0 chr9 94960653 94960719 -47310725 + MIR SINE MIR 111 185 -77 2106 118 7 0 chr9 94961345 94961641 -47309803 - AluSp SINE Alu -15 298 1 2204 101 0 0 chr9 94962344 94962632 -47308812 - AluSx SINE Alu -24 288 1 344 284 82 12 chr9 94963421 94963585 -47307859 - MIR SINE MIR -44 218 38 1494 174 4 0 chr9 94963692 94963939 -47307505 + AluJb SINE Alu 1 248 -64 243 0 0 0 chr9 94963952 94963979 -47307465 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1719 166 25 0 chr9 94963979 94964280 -47307164 + AluJb SINE Alu 1 308 0 188 323 90 23 chr9 94965457 94965590 -47305854 + L2 LINE L2 2943 3084 -188 224 250 12 0 chr9 94966908 94966988 -47304456 + (CA)n Simple_repeat Simple_repeat 2 82 0 357 261 34 10 chr9 94967187 94967305 -47304139 - MIR SINE MIR -73 135 37 282 137 0 39 chr9 94968637 94968688 -47302756 + MIR SINE MIR 105 153 -109 41 0 0 0 chr9 94970035 94970076 -47301368 + GC_rich Low_complexity Low_complexity 1 41 0 181 273 26 65 chr9 94970988 94971065 -47300379 - MIR SINE MIR -76 186 113 2125 102 24 0 chr9 94971508 94971801 -47299643 - AluSx SINE Alu -12 300 1 2340 87 0 0 chr9 94972141 94972441 -47299003 - AluY SINE Alu -11 300 1 180 139 23 70 chr9 94973452 94973495 -47297949 - MER5A DNA MER1_type -102 87 47 243 250 73 40 chr9 94973595 94973719 -47297725 - MIR SINE MIR -88 174 47 1174 263 76 31 chr9 94974187 94974603 -47296841 + MLT1J LTR MaLR 2 441 -70 201 39 0 0 chr9 94974603 94974629 -47296815 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1174 263 76 31 chr9 94974629 94974657 -47296787 + MLT1J LTR MaLR 441 466 -45 2532 59 0 0 chr9 94974659 94974964 -47296480 - AluY SINE Alu -6 305 1 214 304 176 7 chr9 94974966 94975261 -47296183 + L2 LINE L2 2662 3006 -307 2190 103 0 0 chr9 94976276 94976566 -47294878 + AluSx SINE Alu 1 290 -22 1520 161 21 0 chr9 94976621 94976901 -47294543 - LOR1b LTR ERV1 0 461 176 1924 127 0 52 chr9 94976924 94977060 -47294384 + AluSx SINE Alu 5 147 -165 2162 110 10 0 chr9 94977060 94977359 -47294085 + AluSq SINE Alu 5 306 -7 1924 127 0 52 chr9 94977359 94977546 -47293898 + AluSx SINE Alu 147 311 -1 228 253 0 96 chr9 94977636 94977719 -47293725 - MIR SINE MIR -108 154 80 252 281 146 0 chr9 94978050 94978139 -47293305 - MER5A DNA MER1_type -2 187 86 2053 130 7 0 chr9 94978617 94978916 -47292528 + AluSx SINE Alu 1 301 -11 2193 82 4 0 chr9 94979328 94979608 -47291836 + AluSx SINE Alu 1 281 -31 336 24 0 0 chr9 94979608 94979649 -47291795 + (CA)n Simple_repeat Simple_repeat 2 42 0 353 265 17 26 chr9 94980297 94980414 -47291030 + GA-rich Low_complexity Low_complexity 2 117 0 374 295 45 0 chr9 94980915 94981027 -47290417 - MIR SINE MIR -56 206 90 361 233 33 72 chr9 94981250 94981430 -47290014 + L2 LINE L2 2887 3059 -254 205 292 62 56 chr9 94981751 94981895 -47289549 - MIR SINE MIR -38 224 80 557 176 0 0 chr9 94983441 94983526 -47287918 - AluJ/FLAM SINE Alu -225 87 3 213 279 35 57 chr9 94984211 94984369 -47287075 + MIR SINE MIR 46 202 -60 230 273 0 26 chr9 94984402 94984479 -47286965 + G-rich Low_complexity Low_complexity 5 79 0 197 331 108 7 chr9 94984674 94984813 -47286631 + MIR SINE MIR 60 212 -50 221 304 59 0 chr9 94984844 94984946 -47286498 - MIR SINE MIR -88 174 67 1887 131 20 23 chr9 94985716 94986021 -47285423 - AluSg SINE Alu -6 304 1 384 244 89 24 chr9 94986079 94986202 -47285242 - MIR SINE MIR -51 211 81 2313 71 0 7 chr9 94986251 94986546 -47284898 - AluY SINE Alu -18 293 1 225 94 0 0 chr9 94988210 94988242 -47283202 + (TC)n Simple_repeat Simple_repeat 2 33 0 408 20 0 0 chr9 94989763 94989812 -47281632 + (CA)n Simple_repeat Simple_repeat 1 49 0 243 214 235 0 chr9 94991289 94991387 -47280057 + L2 LINE L2 2941 3061 -211 296 264 0 58 chr9 94991514 94991669 -47279775 + GA-rich Low_complexity Low_complexity 5 150 0 2234 98 3 0 chr9 94991779 94992075 -47279369 - AluSx SINE Alu -15 297 1 510 235 64 5 chr9 94992075 94992262 -47279182 - L1M4 LINE L1 -883 5263 5066 335 241 149 21 chr9 94992265 94992406 -47279038 + LTR41 LTR ERVL 11 169 -604 2141 184 15 20 chr9 94992882 94992900 -47278544 - L1MB2 LINE L1 -36 6135 6118 2196 98 0 26 chr9 94992900 94993207 -47278237 - AluSx SINE Alu -13 299 1 2141 184 15 20 chr9 94993207 94993644 -47277800 - L1MB2 LINE L1 -53 6118 5682 2017 282 24 6 chr9 94994586 94995086 -47276358 - MLT1J LTR MaLR -2 509 1 676 244 29 23 chr9 94995253 94995425 -47276019 + MER5A DNA MER1_type 1 173 -16 1930 109 6 56 chr9 94995532 94995881 -47275563 - AluSq SINE Alu 0 313 1 2070 124 3 3 chr9 94995893 94996199 -47275245 - AluJb SINE Alu -6 306 1 837 138 22 0 chr9 94996208 94996346 -47275098 - L1MB8 LINE L1 0 6178 6038 2150 119 0 0 chr9 94996346 94996648 -47274796 - AluSx SINE Alu -10 302 1 2037 107 0 0 chr9 94997186 94997457 -47273987 - AluSx SINE Alu -36 276 6 351 284 90 0 chr9 94997476 94997610 -47273834 + L2 LINE L2 3127 3272 0 315 313 70 8 chr9 94997623 94997751 -47273693 + MIR SINE MIR 57 192 -70 3705 155 61 94 chr9 94998134 94998280 -47273164 + L1MB7 LINE L1 5110 5259 -925 2211 84 0 10 chr9 94998280 94998578 -47272866 - AluSq SINE Alu -18 295 1 3705 155 61 94 chr9 94998578 94998796 -47272648 + L1MB7 LINE L1 5259 5483 -701 2026 107 0 50 chr9 94998796 94999113 -47272331 + AluSg SINE Alu 1 301 -9 3705 155 61 94 chr9 94999113 94999308 -47272136 + L1MB7 LINE L1 5483 5683 -501 2255 76 3 17 chr9 94999308 94999610 -47271834 + AluSx SINE Alu 1 298 -14 3705 155 61 94 chr9 94999610 95000131 -47271313 + L1MB7 LINE L1 5683 6174 -10 190 111 56 0 chr9 95001061 95001097 -47270347 - MIR SINE MIR -68 140 103 2032 100 4 0 chr9 95001415 95001746 -47269698 + AluY SINE Alu 1 332 0 206 351 36 27 chr9 95001821 95001932 -47269512 - L2 LINE L2 -270 3043 2932 2224 108 0 3 chr9 95002515 95002829 -47268615 + AluSq SINE Alu 1 313 0 559 313 18 6 chr9 95002919 95003085 -47268359 + L1MC/D LINE L1 5485 5652 -2156 1617 169 27 25 chr9 95003215 95003387 -47268057 - L1M3 LINE L1 -605 5575 5405 2122 102 0 32 chr9 95003387 95003700 -47267744 - AluSx SINE Alu -9 303 1 1617 169 27 25 chr9 95003700 95003914 -47267530 - L1M3 LINE L1 -775 5405 5188 2149 216 73 31 chr9 95003944 95004699 -47266745 - L1 LINE L1 -1315 4831 4007 1022 184 51 0 chr9 95004704 95004900 -47266544 + MER2 DNA MER2_type 6 211 -134 1272 157 34 217 chr9 95005015 95005048 -47266396 - L1 LINE L1 -2138 4008 3971 1711 191 84 5 chr9 95005048 95005415 -47266029 - MSTD LTR MaLR 0 396 1 1272 157 34 217 chr9 95005415 95005691 -47265753 - L1 LINE L1 -2175 3971 3726 488 239 0 9 chr9 95005691 95005800 -47265644 - FLAM_C SINE Alu -1 142 35 1272 157 34 217 chr9 95005800 95005967 -47265477 - L1 LINE L1 -2420 3726 3530 329 243 90 139 chr9 95006121 95006182 -47265262 - MLT1J LTR MaLR -78 433 371 1772 126 34 27 chr9 95006182 95006476 -47264968 - AluSq SINE Alu -17 296 1 2376 72 0 7 chr9 95006478 95006784 -47264660 - AluY SINE Alu -7 304 1 2059 121 7 0 chr9 95006794 95007101 -47264343 - AluSx SINE Alu -3 309 1 329 243 90 139 chr9 95007101 95007313 -47264131 - MLT1J LTR MaLR -150 361 160 2216 122 39 30 chr9 95007715 95008076 -47263368 + THE1B LTR MaLR 1 364 0 2181 99 0 3 chr9 95008306 95008599 -47262845 - AluSq SINE Alu -21 292 1 348 234 184 75 chr9 95008777 95009016 -47262428 - MLT1H LTR MaLR -146 403 139 273 277 102 53 chr9 95009184 95009317 -47262127 - L1ME LINE L1 -237 5884 5736 1946 119 33 0 chr9 95009317 95009619 -47261825 - AluSq SINE Alu 0 313 2 273 277 102 53 chr9 95009619 95009691 -47261753 - L1ME LINE L1 -385 5736 5669 2197 213 36 29 chr9 95009715 95010240 -47261204 + MLT1F LTR MaLR 8 536 -6 332 210 155 29 chr9 95010258 95010398 -47261046 - MLT1I LTR MaLR -7 424 273 274 303 141 14 chr9 95010408 95010550 -47260894 - MLT1J1 LTR MaLR -286 160 1 691 299 48 31 chr9 95010722 95010862 -47260582 + L1ME4a LINE L1 5520 5656 -465 252 0 0 0 chr9 95010862 95010890 -47260554 + (TA)n Simple_repeat Simple_repeat 2 29 0 2365 73 3 0 chr9 95010890 95011192 -47260252 - AluY SINE Alu -8 303 1 691 299 48 31 chr9 95011192 95011341 -47260103 + L1ME4a LINE L1 5655 5815 -306 252 160 0 40 chr9 95011439 95011489 -47259955 + L1ME4a LINE L1 5979 6026 -95 1902 86 63 0 chr9 95011679 95011947 -47259497 - AluSx SINE Alu -26 286 2 218 123 18 70 chr9 95012116 95012173 -47259271 + GA-rich Low_complexity Low_complexity 4 57 0 278 290 131 37 chr9 95013216 95013430 -47258014 - MLT1J LTR MaLR -169 342 109 1866 117 3 44 chr9 95013517 95013834 -47257610 - AluSq SINE Alu -5 308 5 1402 253 88 41 chr9 95013839 95014311 -47257133 - L1ME1 LINE L1 -298 5868 5367 2372 70 0 3 chr9 95014311 95014611 -47256833 - AluY SINE Alu -12 299 1 1402 253 88 41 chr9 95014611 95014672 -47256772 - L1ME1 LINE L1 -799 5367 5310 867 196 0 23 chr9 95014700 95014873 -47256571 + AluJb SINE Alu 132 300 -12 1594 160 42 17 chr9 95015107 95015394 -47256050 - AluSg SINE Alu -16 294 1 1952 96 39 4 chr9 95015457 95015738 -47255706 - AluSq SINE Alu -22 291 1 1995 110 31 3 chr9 95015975 95016266 -47255178 - AluY SINE Alu -12 299 1 364 283 13 37 chr9 95016344 95016517 -47254927 - MLT1I LTR MaLR 0 549 229 2101 106 0 7 chr9 95016950 95017243 -47254201 - AluSc SINE Alu -18 291 1 356 95 270 0 chr9 95017245 95017308 -47254136 - AluS SINE Alu -222 80 1 352 274 147 19 chr9 95017363 95017520 -47253924 - L1ME LINE L1 -462 5659 5483 279 275 0 33 chr9 95017910 95018001 -47253443 + MIR SINE MIR 58 145 -63 813 271 176 21 chr9 95018903 95019290 -47252154 + MLT1K LTR MaLR 125 571 -17 1035 143 11 60 chr9 95019564 95019718 -47251726 + FAM SINE Alu 1 146 -165 2031 130 0 0 chr9 95019718 95020017 -47251427 - AluSc SINE Alu -10 299 1 1035 143 11 60 chr9 95020017 95020044 -47251400 + FAM SINE Alu 146 173 -2 232 255 75 28 chr9 95020193 95020299 -47251145 + MIR SINE MIR 29 139 -123 343 250 35 69 chr9 95020333 95020477 -47250967 - L1ME LINE L1 -2325 5483 5345 338 236 49 42 chr9 95021007 95021151 -47250293 - MER20B DNA MER1_type -76 707 563 286 285 60 92 chr9 95021242 95021425 -47250019 - L1MC/D LINE L1 -2267 5541 5367 1823 124 3 72 chr9 95021425 95021756 -47249688 - AluSx SINE Alu 0 312 5 286 285 60 92 chr9 95021756 95021821 -47249623 - L1MC/D LINE L1 -2441 5367 5301 909 216 54 0 chr9 95021828 95022032 -47249412 - MER82 DNA MER2_type -234 419 205 262 286 36 12 chr9 95022105 95022189 -47249255 - MER82 DNA MER2_type -567 86 1 196 319 89 22 chr9 95023206 95023341 -47248103 - MIR SINE MIR -87 175 32 2080 102 0 20 chr9 95023605 95023900 -47247544 - AluSx SINE Alu -23 289 1 483 276 62 5 chr9 95023943 95024135 -47247309 - L1ME LINE L1 -375 5815 5613 1112 201 178 15 chr9 95025783 95026176 -47245268 - MER31B LTR ERV1 -9 457 1 2040 250 124 37 chr9 95031815 95033111 -47238333 + L1MDb LINE L1 775 2347 -4240 2226 90 3 3 chr9 95033111 95033412 -47238032 + AluSp SINE Alu 1 301 -12 2040 250 124 37 chr9 95033412 95033803 -47237641 + L1MDb LINE L1 2347 2703 -3884 2448 255 70 44 chr9 95033809 95033827 -47237617 - L1ME LINE L1 -1864 4351 4335 2057 106 7 0 chr9 95033827 95034109 -47237335 - AluSc SINE Alu -25 284 1 2448 255 70 44 chr9 95034109 95034660 -47236784 - L1ME LINE L1 -1880 4335 3741 231 36 0 0 chr9 95034660 95034688 -47236756 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2448 255 70 44 chr9 95034688 95035144 -47236300 - L1ME LINE L1 -2474 3741 3298 5437 242 61 55 chr9 95035294 95036482 -47234962 - L1MEc LINE L1 -2932 3283 2103 1969 100 25 4 chr9 95036482 95036761 -47234683 + AluSc SINE Alu 1 285 -24 5437 242 61 55 chr9 95036761 95036963 -47234481 - L1MEc LINE L1 -4112 2103 1904 1838 120 36 0 chr9 95036963 95037238 -47234206 - AluSx SINE Alu -27 285 1 5437 242 61 55 chr9 95037238 95037979 -47233465 - L1MEc LINE L1 -4311 1904 1169 2249 103 3 0 chr9 95037979 95038289 -47233155 - AluSq SINE Alu -2 311 1 5437 242 61 55 chr9 95038289 95038558 -47232886 - L1MEc LINE L1 -5046 1169 903 1805 167 3 0 chr9 95038558 95038857 -47232587 - AluJb SINE Alu -12 300 1 5437 242 61 55 chr9 95038857 95038987 -47232457 - L1MEc LINE L1 -5312 903 775 2007 111 7 0 chr9 95038987 95039295 -47232149 - AluSq SINE Alu 0 310 1 5437 242 61 55 chr9 95039295 95039457 -47231987 - L1MEc LINE L1 -5440 775 615 1056 209 14 0 chr9 95039457 95039672 -47231772 + MER20 DNA MER1_type 2 219 0 5437 242 61 55 chr9 95039672 95040273 -47231171 - L1MEc LINE L1 -5600 615 28 346 265 41 10 chr9 95040402 95040500 -47230944 + L1ME4a LINE L1 5846 5946 -175 1999 112 7 0 chr9 95040554 95040840 -47230604 + AluSx SINE Alu 1 288 -24 693 150 6 119 chr9 95041466 95041556 -47229888 + L1M4c LINE L1 29 128 -6256 204 40 0 0 chr9 95041556 95041581 -47229863 + (TG)n Simple_repeat Simple_repeat 2 26 0 1903 127 11 0 chr9 95041581 95041865 -47229579 - AluSq SINE Alu -26 287 1 693 150 6 119 chr9 95041865 95041933 -47229511 + L1M4c LINE L1 126 170 -6214 * 1215 173 77 34 chr9 95041932 95042241 -47229203 + L1M4c LINE L1 532 843 -5437 6072 208 47 13 chr9 95042253 95042281 -47229163 + L1M4c LINE L1 1997 2023 -4359 1337 129 0 60 chr9 95042281 95042529 -47228915 + L1PB4 LINE L1 5922 6154 -2 6072 208 47 13 chr9 95042529 95044700 -47226744 + L1M4c LINE L1 2023 4271 -2111 388 221 12 0 chr9 95044703 95044789 -47226655 + L1MB4 LINE L1 5946 6032 -148 641 66 0 0 chr9 95044789 95044865 -47226579 - U6 snRNA snRNA -31 76 1 550 209 124 0 chr9 95044867 95044996 -47226448 + L1MB4 LINE L1 6022 6166 -14 572 182 16 26 chr9 95045097 95045269 -47226175 - LTR37A LTR ERV1 0 426 291 579 247 84 25 chr9 95045331 95045606 -47225838 + HAL1 LINE L1 2107 2397 -110 392 241 55 10 chr9 95045616 95045815 -47225629 + L1ME1 LINE L1 1138 1345 -5197 428 157 0 24 chr9 95045815 95045898 -47225546 + AluS SINE Alu 230 310 0 1611 227 27 25 chr9 95045898 95046374 -47225070 + L1ME1 LINE L1 2645 3121 -3523 1738 193 42 5 chr9 95046374 95046707 -47224737 + MLT2D LTR ERVL 10 504 -50 432 97 0 0 chr9 95046707 95046769 -47224675 + (CA)n Simple_repeat Simple_repeat 2 63 0 1738 193 42 5 chr9 95046769 95046802 -47224642 + MLT2D LTR ERVL 504 534 -20 303 28 0 0 chr9 95047150 95047186 -47224258 + (TG)n Simple_repeat Simple_repeat 1 36 0 6202 231 52 53 chr9 95047526 95047942 -47223502 + L1ME1 LINE L1 3358 3773 -2891 2312 66 33 7 chr9 95047942 95048245 -47223199 + AluY SINE Alu 1 311 0 6202 231 52 53 chr9 95048245 95048937 -47222507 + L1ME1 LINE L1 3773 4464 -2200 1091 170 0 6 chr9 95048937 95049108 -47222336 + FAM SINE Alu 1 170 -5 6202 231 52 53 chr9 95049108 95050457 -47220987 + L1ME1 LINE L1 4464 5857 -807 2289 78 0 0 chr9 95050457 95050750 -47220694 + AluSg1 SINE Alu 1 293 -16 6202 231 52 53 chr9 95050750 95051543 -47219901 + L1ME1 LINE L1 5857 6649 -15 2705 271 70 6 chr9 95051659 95052540 -47218904 + L1MEc LINE L1 37 974 -5422 2591 286 82 10 chr9 95052512 95054312 -47217132 + L1ME1 LINE L1 3895 5819 -416 * 811 240 104 32 chr9 95054553 95054933 -47216511 + L1ME1 LINE L1 5766 6326 -8 268 295 151 25 chr9 95055055 95055374 -47216070 + L1MEc LINE L1 963 1321 -4884 421 336 167 18 chr9 95055387 95055783 -47215661 + L1MEc LINE L1 1329 1783 -4432 1460 282 127 22 chr9 95056123 95057332 -47214112 + L1MEc LINE L1 2214 3577 -2638 487 301 110 29 chr9 95057789 95058134 -47213310 + L1MEc LINE L1 3564 3936 -2279 338 300 52 21 chr9 95058136 95058358 -47213086 + L1MEc LINE L1 4041 4266 -1949 208 291 18 0 chr9 95058382 95058437 -47213007 + MER5B DNA MER1_type 59 114 -64 4032 259 67 17 chr9 95058985 95060889 -47210555 + L1MB1 LINE L1 4232 6243 -15 241 256 122 0 chr9 95061154 95061244 -47210200 + L1ME3A LINE L1 5834 5934 -236 1605 140 65 4 chr9 95061480 95061759 -47209685 + AluJb SINE Alu 1 296 -16 1275 127 94 9 chr9 95063944 95064156 -47207288 - MER30 DNA MER1_type 0 230 1 190 290 16 0 chr9 95064803 95064865 -47206579 + L3 LINE CR1 1191 1253 -324 252 341 96 7 chr9 95065054 95065189 -47206255 + L3 LINE CR1 1307 1453 -124 2165 95 7 0 chr9 95067024 95067320 -47204124 - AluSx SINE Alu -13 299 2 376 254 11 0 chr9 95067513 95067690 -47203754 + CT-rich Low_complexity Low_complexity 1 179 0 23 0 0 0 chr9 95069104 95069127 -47202317 + AT_rich Low_complexity Low_complexity 1 23 0 201 175 48 36 chr9 95069417 95069583 -47201861 + CT-rich Low_complexity Low_complexity 1 168 0 246 198 35 35 chr9 95069595 95069681 -47201763 + CT-rich Low_complexity Low_complexity 1 86 0 331 141 32 71 chr9 95069683 95070035 -47201409 + C-rich Low_complexity Low_complexity 1 338 0 193 129 10 89 chr9 95070135 95070236 -47201208 + (TCC)n Simple_repeat Simple_repeat 1 93 0 296 218 17 39 chr9 95070314 95070493 -47200951 + C-rich Low_complexity Low_complexity 3 177 0 430 177 26 88 chr9 95070525 95070717 -47200727 + C-rich Low_complexity Low_complexity 1 180 0 330 201 58 23 chr9 95070746 95070920 -47200524 + CT-rich Low_complexity Low_complexity 1 180 0 218 122 49 0 chr9 95073528 95073569 -47197875 + (CCCCG)n Simple_repeat Simple_repeat 3 45 0 23 0 0 0 chr9 95074191 95074214 -47197230 + AT_rich Low_complexity Low_complexity 1 23 0 1792 163 0 3 chr9 95076639 95076933 -47194511 - AluJb SINE Alu -19 293 1 256 220 0 0 chr9 95080170 95080220 -47191224 + T-rich Low_complexity Low_complexity 1 50 0 203 0 0 36 chr9 95080938 95080966 -47190478 + (TC)n Simple_repeat Simple_repeat 1 27 0 196 298 99 33 chr9 95082350 95082471 -47188973 - MIR SINE MIR -8 254 126 219 36 0 0 chr9 95082512 95082540 -47188904 + (CAGGC)n Simple_repeat Simple_repeat 2 29 0 370 267 37 7 chr9 95082807 95082942 -47188502 - L1M4 LINE L1 -2514 3632 3494 732 255 110 53 chr9 95083071 95083651 -47187793 - L1M4 LINE L1 -2631 3515 2903 218 350 108 0 chr9 95083819 95083976 -47187468 + L2 LINE L2 2542 2715 -599 1109 137 0 33 chr9 95084157 95084172 -47187272 + AluJo SINE Alu 120 134 -178 1819 173 11 37 chr9 95084172 95084524 -47186920 - L1MB3 LINE L1 -19 6164 5822 1109 137 0 33 chr9 95084524 95084690 -47186754 + AluJo SINE Alu 134 295 -17 3309 199 67 60 chr9 95084690 95085317 -47186127 - L1MB3 LINE L1 -86 6333 5712 264 30 0 0 chr9 95085323 95085356 -47186088 + (TG)n Simple_repeat Simple_repeat 2 34 0 2131 82 25 0 chr9 95085356 95085629 -47185815 - AluSq SINE Alu -24 289 7 3309 199 67 60 chr9 95085629 95086091 -47185353 - L1MB3 LINE L1 -707 5712 5219 1999 87 0 18 chr9 95086091 95086366 -47185078 - AluSc SINE Alu -12 297 28 3309 199 67 60 chr9 95086366 95086544 -47184900 - L1MB3 LINE L1 -1200 5219 5044 1181 231 60 40 chr9 95086516 95086997 -47184447 - L1MB3 LINE L1 -5088 1296 806 * 231 238 48 0 chr9 95086997 95087081 -47184363 - L1MDb LINE L1 -5133 1276 1189 227 260 75 29 chr9 95087315 95087488 -47183956 - L1ME LINE L1 -718 5726 5546 330 133 0 0 chr9 95087501 95087561 -47183883 - HSMAR2 DNA Mariner 0 1302 1243 1789 145 3 36 chr9 95087562 95087706 -47183738 + AluJb SINE Alu 1 131 -181 2223 87 0 35 chr9 95087706 95088016 -47183428 + AluSq SINE Alu 2 300 -13 1789 145 3 36 chr9 95088016 95088175 -47183269 + AluJb SINE Alu 131 294 -18 229 283 0 0 chr9 95088176 95088222 -47183222 + Alu SINE Alu 136 181 -121 * 7174 142 15 39 chr9 95088215 95089500 -47181944 - HSMAR2 DNA Mariner -46 1256 3 369 0 0 0 chr9 95089500 95089541 -47181903 + (TG)n Simple_repeat Simple_repeat 2 42 0 920 308 62 12 chr9 95089625 95090459 -47180985 - L1ME LINE L1 -1098 5328 4432 365 250 50 0 chr9 95094839 95094939 -47176505 + Charlie4 DNA MER1_type 14 118 -1843 2225 105 0 10 chr9 95095338 95095651 -47175793 - AluSg SINE Alu 0 310 1 2407 58 3 6 chr9 95096023 95096335 -47175109 - AluY SINE Alu 0 311 1 1029 182 0 0 chr9 95096891 95097067 -47174377 + AluJb SINE Alu 137 312 0 254 299 87 54 chr9 95097572 95097813 -47173631 + L2 LINE L2 2231 2479 -835 898 298 89 17 chr9 95098775 95099238 -47172206 + MLT1D LTR MaLR 3 498 -7 1402 183 27 40 chr9 95101723 95101893 -47169551 - AluJo SINE Alu -16 296 130 2003 110 27 3 chr9 95101893 95102185 -47169259 - AluSx SINE Alu -13 299 1 1402 183 27 40 chr9 95102185 95102314 -47169130 - AluJo SINE Alu -182 130 1 1992 144 0 13 chr9 95102592 95102890 -47168554 + AluSx SINE Alu 1 294 -18 2468 73 0 7 chr9 95104306 95104607 -47166837 + AluY SINE Alu 1 299 -12 554 203 133 22 chr9 95105016 95105252 -47166192 - L1MCa LINE L1 -3951 2475 2270 1107 213 49 0 chr9 95105253 95105497 -47165947 - L1MCa LINE L1 -5693 733 478 1283 84 0 0 chr9 95105497 95105652 -47165792 + AluSg/x SINE Alu 135 289 -21 1250 267 7 0 chr9 95105653 95105923 -47165521 - L1MCa LINE L1 -5942 484 213 2533 101 31 6 chr9 95106544 95106899 -47164545 + THE1B LTR MaLR 1 364 0 357 237 21 10 chr9 95107250 95107347 -47164097 - MER5A DNA MER1_type -1 188 91 182 234 65 39 chr9 95107592 95107669 -47163775 - MIR SINE MIR -116 146 68 23 0 0 0 chr9 95107811 95107834 -47163610 + AT_rich Low_complexity Low_complexity 1 23 0 2181 114 0 3 chr9 95107882 95108179 -47163265 - AluSx SINE Alu -16 296 1 2092 147 0 0 chr9 95108241 95108553 -47162891 - AluSx SINE Alu 0 312 1 2193 121 18 49 chr9 95111018 95111405 -47160039 + THE1C LTR MaLR 1 375 0 10787 109 9 33 chr9 95111406 95113025 -47158419 + THE1C-int LTR MaLR 2 1580 0 2221 122 24 27 chr9 95113025 95113401 -47158043 + THE1C LTR MaLR 1 375 0 188 163 23 0 chr9 95114060 95114103 -47157341 + (CA)n Simple_repeat Simple_repeat 1 44 0 1933 125 14 10 chr9 95114345 95114634 -47156810 - AluSx SINE Alu -22 290 1 231 36 0 0 chr9 95114768 95114796 -47156648 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 22 88 0 0 chr9 95115232 95115289 -47156155 + AT_rich Low_complexity Low_complexity 1 57 0 2463 88 0 3 chr9 95115358 95115664 -47155780 - AluSp SINE Alu -8 305 1 375 260 31 24 chr9 95116595 95116722 -47154722 + L3 LINE CR1 1295 1422 -155 263 229 36 36 chr9 95117011 95117094 -47154350 + AluSc SINE Alu 1 83 -216 1930 119 56 0 chr9 95117764 95118049 -47153395 + AluSx SINE Alu 1 301 -11 3091 69 7 42 chr9 95118518 95118871 -47152573 - L1PA10 LINE L1 0 6168 5833 1798 130 63 18 chr9 95118871 95119156 -47152288 - AluSx SINE Alu -14 298 1 3091 69 7 42 chr9 95119156 95119249 -47152195 - L1PA10 LINE L1 -335 5833 5738 1996 99 99 0 chr9 95120705 95120987 -47150457 + AluSx SINE Alu 1 310 -2 3551 51 0 9 chr9 95121305 95121756 -47149688 + LTR7 LTR ERV1 2 448 -2 20434 92 25 21 chr9 95121758 95124742 -47146702 + HERVH LTR ERV1 1 2995 -4718 961 127 7 0 chr9 95124721 95124871 -47146573 + HERVH LTR ERV1 3140 3290 -4423 * 3317 118 0 8 chr9 95124875 95125367 -47146077 + HERVH LTR ERV1 3505 3992 -3721 * 4471 143 5 1 chr9 95125354 95126020 -47145424 + HERVH LTR ERV1 4482 5149 -2564 1455 110 18 9 chr9 95126021 95126239 -47145205 + HERVH LTR ERV1 5600 5819 -1894 * 2557 82 45 13 chr9 95126237 95126617 -47144827 + HERVH LTR ERV1 7322 7713 0 3434 56 14 7 chr9 95126617 95127062 -47144382 + LTR7 LTR ERV1 1 448 -2 1886 129 0 0 chr9 95127375 95127639 -47143805 - AluSp SINE Alu -16 297 34 1762 134 11 0 chr9 95127756 95128018 -47143426 + AluSq SINE Alu 45 309 -4 1675 133 52 0 chr9 95128020 95128268 -47143176 - MER57B LTR ERV1 -173 261 1 1205 208 86 0 chr9 95129593 95129848 -47141596 + AluJb SINE Alu 6 282 -30 565 113 31 21 chr9 95130128 95130225 -47141219 + MER4A LTR ERV1 1 98 -566 1829 142 3 27 chr9 95130225 95130579 -47140865 + MER4A LTR ERV1 261 664 0 2864 81 158 79 chr9 95130581 95131126 -47140318 + MER4A-int LTR ERV1 1 588 -6010 * 4084 127 56 20 chr9 95131121 95132004 -47139440 + MER4B-int LTR ERV1 199 1149 -5609 369 0 0 0 chr9 95132004 95132045 -47139399 + (TG)n Simple_repeat Simple_repeat 2 42 0 4487 75 60 9 chr9 95132064 95132748 -47138696 + MER4B-int LTR ERV1 1763 2481 -4117 2359 102 0 0 chr9 95132749 95133043 -47138401 + AluY SINE Alu 1 294 -17 1275 133 124 26 chr9 95133071 95133305 -47138139 - LTR8 LTR ERV1 -434 257 1 1196 98 98 80 chr9 95133305 95133579 -47137865 + MER4B-int LTR ERV1 2737 3015 -3583 7293 100 26 22 chr9 95133679 95134334 -47137110 + MER4B-int LTR ERV1 4468 5132 -1466 2008 141 3 3 chr9 95134334 95134638 -47136806 - AluSx SINE Alu -8 304 1 7293 100 26 22 chr9 95134638 95135150 -47136294 + MER4B-int LTR ERV1 5132 5640 -958 2159 126 17 0 chr9 95135432 95135734 -47135710 - AluSx SINE Alu -5 307 1 183 256 105 23 chr9 95136127 95136213 -47135231 - MIR SINE MIR -85 123 31 317 319 106 56 chr9 95136373 95136733 -47134711 - L1M4 LINE L1 -1333 4813 4436 625 248 65 77 chr9 95136821 95136977 -47134467 - L2 LINE L2 -13 3300 3144 2196 210 36 0 chr9 95136977 95137416 -47134028 + MSTB2 LTR MaLR 3 457 0 625 248 65 77 chr9 95137416 95137458 -47133986 - L2 LINE L2 -169 3144 3103 1399 223 60 48 chr9 95137458 95137955 -47133489 + MLT1D LTR MaLR 1 503 -2 625 248 65 77 chr9 95137955 95138094 -47133350 - L2 LINE L2 -210 3103 2966 209 277 188 18 chr9 95138174 95138286 -47133158 + MIR3 SINE MIR 15 145 -63 206 248 69 20 chr9 95139414 95139515 -47131929 - L2 LINE L2 -978 2336 2231 2213 101 0 3 chr9 95140022 95140310 -47131134 - AluSx SINE Alu -25 287 1 400 191 0 0 chr9 95140313 95140381 -47131063 - AluJo SINE Alu -9 293 226 859 196 7 0 chr9 95140382 95140530 -47130914 - AluJo SINE Alu -163 149 1 1253 154 45 0 chr9 95140571 95140772 -47130672 + MSTB LTR MaLR 217 426 0 2514 198 14 24 chr9 95140772 95141164 -47130280 - ERVL LTR ERVL -3989 1775 1388 1806 172 27 0 chr9 95141164 95141461 -47129983 - AluJo SINE Alu -7 305 1 2514 198 14 24 chr9 95141461 95141573 -47129871 - ERVL LTR ERVL -4376 1388 1276 6553 119 32 19 chr9 95141589 95141764 -47129680 - L1MA3 LINE L1 0 6305 6134 206 32 32 0 chr9 95141764 95141795 -47129649 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2093 125 0 7 chr9 95141795 95142082 -47129362 - AluSq SINE Alu -28 285 1 6553 119 32 19 chr9 95142082 95143092 -47128352 - L1MA3 LINE L1 -170 6135 5104 423 209 0 0 chr9 95143094 95143180 -47128264 - ERVL LTR ERVL -4407 1247 1162 1045 295 97 21 chr9 95143356 95143919 -47127525 + L2 LINE L2 2435 3053 -260 301 272 11 122 chr9 95144074 95144254 -47127190 - MER5A DNA MER1_type -7 182 23 1840 158 123 9 chr9 95144255 95144604 -47126840 + MLT1B LTR MaLR 1 389 -1 1197 153 5 0 chr9 95144606 95144809 -47126635 + MLT1B-int LTR MaLR 2 205 -1166 2340 112 0 0 chr9 95144809 95145112 -47126332 + AluSg SINE Alu 1 303 -7 1579 92 0 31 chr9 95146033 95146261 -47125183 + AluSg/x SINE Alu 91 311 -1 311 235 106 47 chr9 95146265 95146435 -47125009 + L1M4 LINE L1 4254 4433 -1713 2001 125 11 0 chr9 95146459 95146779 -47124665 - AluSx SINE Alu 0 323 1 810 203 123 27 chr9 95146783 95147044 -47124400 - L1MEc LINE L1 -4469 2138 1853 4397 151 34 4 chr9 95147045 95147800 -47123644 - L1MC1 LINE L1 0 6333 5556 887 107 16 8 chr9 95147801 95147923 -47123521 + AluSq/x SINE Alu 2 124 -188 2073 142 0 0 chr9 95147925 95148227 -47123217 + AluSx SINE Alu 1 302 -10 1482 146 34 15 chr9 95148227 95148495 -47122949 - L1MC1 LINE L1 -778 5566 5294 4749 167 42 22 chr9 95148505 95149446 -47121998 - L1MB1 LINE L1 -39 6365 5363 2011 148 7 10 chr9 95149446 95149750 -47121694 - AluSx SINE Alu -9 303 1 4749 167 42 22 chr9 95149750 95150566 -47120878 - L1MB1 LINE L1 -1041 5363 4565 1710 157 0 11 chr9 95150571 95150839 -47120605 - AluSx SINE Alu -47 265 1 1441 233 91 9 chr9 95150887 95151217 -47120227 - LTR18A LTR ERVL 0 357 1 16093 148 11 6 chr9 95151218 95153595 -47117849 - HERVL18 LTR ERVL 0 6047 3659 517 133 57 9 chr9 95153595 95153700 -47117744 - L1MB1 LINE L1 -4059 2325 2216 1832 146 86 13 chr9 95153700 95154015 -47117429 + MER44D DNA MER2_type 1 608 -1 9771 154 35 82 chr9 95154019 95155104 -47116340 - L1MB1 LINE L1 -4171 2213 1079 2450 160 26 2 chr9 95155104 95155522 -47115922 - MSTA LTR MaLR 0 428 1 9771 154 35 82 chr9 95155522 95156057 -47115387 - L1MB1 LINE L1 -5305 1079 730 1994 164 0 0 chr9 95156057 95156356 -47115088 - AluJb SINE Alu -13 299 1 9771 154 35 82 chr9 95156356 95157037 -47114407 - L1MB1 LINE L1 -5654 730 19 1167 175 47 0 chr9 95157040 95157274 -47114170 - L1MEc LINE L1 -4762 1664 1420 212 329 0 13 chr9 95157324 95157400 -47114044 - MER5A DNA MER1_type 0 189 115 * 226 289 22 22 chr9 95157347 95157437 -47114007 + MER5A DNA MER1_type 35 124 -65 2553 113 8 8 chr9 95157823 95158187 -47113257 + THE1B LTR MaLR 1 364 0 193 274 0 0 chr9 95159087 95159138 -47112306 + MER5A DNA MER1_type 128 178 -11 241 200 17 0 chr9 95159156 95159216 -47112228 + L2 LINE L2 2994 3054 -218 14403 143 23 12 chr9 95160988 95161640 -47109804 + Tigger1 DNA MER2_type 2 646 -1772 2404 82 0 3 chr9 95161640 95161932 -47109512 + AluSp SINE Alu 1 291 -22 14403 143 23 12 chr9 95161932 95163670 -47107774 + Tigger1 DNA MER2_type 646 2417 -1 749 268 7 43 chr9 95163947 95163961 -47107483 - L1MEc LINE L1 -3905 2702 2689 1560 202 28 14 chr9 95163961 95164313 -47107131 - L1MC2 LINE L1 -15 6329 5973 749 268 7 43 chr9 95164313 95164407 -47107037 - L1MEc LINE L1 -3918 2689 2593 2272 112 0 16 chr9 95164407 95164721 -47106723 - AluSq SINE Alu -3 310 2 749 268 7 43 chr9 95164721 95164910 -47106534 - L1MEc LINE L1 -4014 2593 2415 900 130 0 43 chr9 95164911 95165049 -47106395 - FLAM_C SINE Alu -11 132 1 446 212 53 0 chr9 95165052 95165184 -47106260 - L1MEc LINE L1 -4042 2384 2246 382 119 0 0 chr9 95165206 95165265 -47106179 - L1MEc LINE L1 -4226 2200 2142 1525 172 19 114 chr9 95165270 95165647 -47105797 - MER41D LTR ERV1 0 557 217 656 121 40 0 chr9 95165647 95165746 -47105698 - AluSg/x SINE Alu -15 297 195 398 192 29 51 chr9 95166255 95166581 -47104863 + G-rich Low_complexity Low_complexity 1 318 0 221 194 28 42 chr9 95166598 95166670 -47104774 + GA-rich Low_complexity Low_complexity 1 71 0 201 175 48 36 chr9 95166682 95166848 -47104596 + GA-rich Low_complexity Low_complexity 1 168 0 23 0 0 0 chr9 95167138 95167161 -47104283 + AT_rich Low_complexity Low_complexity 1 23 0 376 254 11 0 chr9 95168575 95168752 -47102692 + GA-rich Low_complexity Low_complexity 1 179 0 2099 128 0 0 chr9 95168945 95169235 -47102209 + AluSx SINE Alu 2 291 -21 1187 154 0 55 chr9 95169236 95169394 -47102050 - MER41D LTR ERV1 -349 208 63 1642 172 7 7 chr9 95169394 95169706 -47101738 - AluJo SINE Alu 0 314 3 1187 154 0 55 chr9 95169706 95169766 -47101678 - MER41D LTR ERV1 -494 63 1 296 135 14 108 chr9 95169776 95169850 -47101594 - Ricksha DNA DNA -2332 914 848 2245 181 24 91 chr9 95169862 95170402 -47101042 - MLT2B3 LTR ERVL -39 515 12 718 182 55 22 chr9 95170472 95170653 -47100791 - L1MEc LINE L1 -4417 2009 1823 5360 173 42 7 chr9 95170684 95170813 -47100631 - L1MA9 LINE L1 0 7731 7608 252 0 0 0 chr9 95170813 95170841 -47100603 + (TG)n Simple_repeat Simple_repeat 2 29 0 5360 173 42 7 chr9 95170841 95171987 -47099457 - L1MA9 LINE L1 -123 7608 6413 3706 113 0 11 chr9 95171990 95172532 -47098912 - L1MA3 LINE L1 -1 7723 7188 25 31 0 0 chr9 95172536 95172568 -47098876 + AT_rich Low_complexity Low_complexity 1 32 0 875 99 0 0 chr9 95172576 95172687 -47098757 - FLAM_C SINE Alu -32 111 1 3699 136 15 4 chr9 95172687 95173659 -47097785 - L1MA3 LINE L1 -520 7204 6218 * 5426 102 14 7 chr9 95173656 95174472 -47096972 + L1M1 LINE L1 2634 3454 -4111 1051 171 219 4 chr9 95174474 95174720 -47096724 - L1MA3 LINE L1 -7247 318 20 6440 177 46 3 chr9 95174729 95176021 -47095423 - L1MA9 LINE L1 -1145 6420 5073 2585 157 29 2 chr9 95176022 95176435 -47095009 - MSTB1 LTR MaLR 0 432 9 4670 217 123 22 chr9 95176448 95177017 -47094427 - L1MA9 LINE L1 -2494 5071 4561 1717 215 42 16 chr9 95177017 95177403 -47094041 + MSTD LTR MaLR 1 396 0 4670 217 123 22 chr9 95177403 95178539 -47092905 - L1MA9 LINE L1 -3004 4561 3157 2341 100 0 0 chr9 95178539 95178828 -47092616 - AluSg SINE Alu -21 289 1 4670 217 123 22 chr9 95178828 95179029 -47092415 - L1MA9 LINE L1 -4408 3157 2978 2592 247 80 40 chr9 95179012 95180233 -47091211 - L1P3 LINE L1 -4740 1135 10 * 2698 236 54 57 chr9 95180249 95180562 -47090882 - L1M2 LINE L1 -4246 1789 1477 739 111 9 0 chr9 95180562 95180670 -47090774 + HY1 scRNA scRNA 1 109 -3 1676 109 0 4 chr9 95180670 95180899 -47090545 - AluSq SINE Alu -11 302 75 2698 236 54 57 chr9 95180899 95180999 -47090445 - L1M2 LINE L1 -4557 1478 1379 2087 106 0 0 chr9 95180999 95181264 -47090180 + AluSx SINE Alu 26 290 -22 2698 236 54 57 chr9 95181264 95181418 -47090026 - L1M2 LINE L1 -4656 1379 1226 2279 108 7 0 chr9 95181418 95181714 -47089730 + AluSc SINE Alu 1 298 -11 2698 236 54 57 chr9 95181714 95183279 -47088165 - L1M2 LINE L1 -4809 1226 11 409 154 77 29 chr9 95183270 95183374 -47088070 - L1MCa LINE L1 -4575 1851 1743 * 3143 136 30 17 chr9 95183379 95183657 -47087787 - L1MC1 LINE L1 -5 6328 6038 2159 131 0 0 chr9 95183657 95183954 -47087490 - AluSx SINE Alu -14 298 2 3143 136 30 17 chr9 95183954 95184211 -47087233 - L1MC1 LINE L1 -295 6038 5786 763 156 16 0 chr9 95184318 95184446 -47086998 - L1MC1 LINE L1 -555 5778 5649 985 145 6 6 chr9 95184446 95184615 -47086829 + L1MB3 LINE L1 6005 6176 -7 427 215 77 64 chr9 95184700 95184807 -47086637 + L1ME LINE L1 5589 5693 -428 2366 95 3 0 chr9 95184807 95185103 -47086341 + AluSx SINE Alu 2 298 -14 427 215 77 64 chr9 95185103 95185228 -47086216 + L1ME LINE L1 5693 5824 -297 1579 169 11 0 chr9 95185229 95185489 -47085955 + AluJb SINE Alu 4 266 -46 342 322 121 10 chr9 95185737 95185936 -47085508 - MIR SINE MIR -8 254 34 1572 205 43 94 chr9 95186007 95186568 -47084876 - LTR55 LTR ERV -9 539 8 5238 195 30 16 chr9 95186840 95188726 -47082718 - L1MB4 LINE L1 -18 6162 4249 2332 80 0 29 chr9 95188726 95189037 -47082407 - AluY SINE Alu -9 302 1 5238 195 30 16 chr9 95189037 95189278 -47082166 - L1MB4 LINE L1 -1931 4249 4013 1059 257 166 16 chr9 95189393 95189844 -47081600 + LTR33 LTR ERVL 1 519 -2 831 281 109 62 chr9 95189896 95190362 -47081082 - L2 LINE L2 0 3313 2826 894 204 112 42 chr9 95191067 95191352 -47080092 + L1MC5 LINE L1 7610 7914 -47 420 267 52 107 chr9 95191713 95191848 -47079596 + L1ME4a LINE L1 5255 5396 -725 1546 168 23 59 chr9 95191848 95192151 -47079293 + AluJo SINE Alu 1 292 -20 420 267 52 107 chr9 95192151 95192489 -47078955 + L1ME4a LINE L1 5396 5696 -425 1651 159 4 26 chr9 95192489 95192760 -47078684 + AluJb SINE Alu 23 287 -25 420 267 52 107 chr9 95192760 95192871 -47078573 + L1ME4a LINE L1 5696 5812 -309 265 241 38 13 chr9 95192900 95192979 -47078465 - L1ME LINE L1 -244 5877 5797 293 280 64 8 chr9 95193025 95193150 -47078294 + L1ME4a LINE L1 5990 6121 0 2228 116 0 3 chr9 95193487 95193790 -47077654 + AluSx SINE Alu 1 302 -10 301 245 98 90 chr9 95194101 95194346 -47077098 - HAL1 LINE L1 -4 2503 2257 1619 251 72 66 chr9 95194660 95194970 -47076474 - HAL1 LINE L1 -725 1782 1475 996 199 27 80 chr9 95194970 95195113 -47076331 - MER33 DNA MER1_type -2262 323 174 2363 91 0 13 chr9 95195113 95195420 -47076024 + AluSg SINE Alu 1 303 -7 996 199 27 80 chr9 95195420 95195613 -47075831 - MER33 DNA MER1_type -2411 174 5 1619 251 72 66 chr9 95195613 95196135 -47075309 - HAL1 LINE L1 -1032 1475 945 296 329 8 64 chr9 95196156 95196178 -47075266 - HAL1 LINE L1 -1527 980 958 2099 131 0 0 chr9 95196178 95196491 -47074953 + AluSx SINE Alu 1 313 0 296 329 8 64 chr9 95196491 95196716 -47074728 - HAL1 LINE L1 -1549 958 746 22 0 0 0 chr9 95196732 95196754 -47074690 + AT_rich Low_complexity Low_complexity 1 22 0 570 250 104 65 chr9 95196968 95197145 -47074299 - LTR24B LTR ERV1 0 467 287 1899 145 3 17 chr9 95197145 95197442 -47074002 - AluSx SINE Alu -19 293 1 570 250 104 65 chr9 95197442 95197589 -47073855 - LTR24B LTR ERV1 -180 287 147 344 203 0 14 chr9 95197691 95197765 -47073679 - LTR24B LTR ERV1 -499 77 5 300 271 24 12 chr9 95197770 95197790 -47073654 + CT-rich Low_complexity Low_complexity 2 20 -67 2545 53 0 0 chr9 95197790 95198092 -47073352 - AluY SINE Alu -9 302 1 300 271 24 12 chr9 95198092 95198156 -47073288 + CT-rich Low_complexity Low_complexity 20 87 0 287 276 41 10 chr9 95198417 95198515 -47072929 - HAL1 LINE L1 -2360 147 47 3516 100 89 48 chr9 95198693 95199301 -47072143 - LTR10E LTR ERV1 0 633 1 38 39 0 0 chr9 95199617 95199669 -47071775 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 95200582 95200611 -47070833 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 95201189 95201209 -47070235 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1639 177 7 7 chr9 95201209 95201492 -47069952 - AluJb SINE Alu -29 283 1 2125 117 4 0 chr9 95201922 95202225 -47069219 + AluSp SINE Alu 1 304 0 24 0 0 0 chr9 95202264 95202288 -47069156 + AT_rich Low_complexity Low_complexity 1 24 0 243 216 52 62 chr9 95202474 95202571 -47068873 + L1ME LINE L1 70 165 -5905 2159 103 31 0 chr9 95202623 95202914 -47068530 - AluSx SINE Alu -12 300 1 277 185 37 0 chr9 95202988 95203042 -47068402 + L1MDa LINE L1 384 439 -6205 291 277 38 24 chr9 95203472 95203637 -47067807 + L1MDa LINE L1 1035 1208 -5341 1984 124 45 7 chr9 95203654 95203944 -47067500 + AluSx SINE Alu 1 301 -11 5035 238 72 37 chr9 95204084 95204153 -47067291 - L1M4 LINE L1 -1832 4314 4249 2420 77 0 16 chr9 95204153 95204464 -47066980 - AluSx SINE Alu -6 306 1 5035 238 72 37 chr9 95204464 95205015 -47066429 - L1M4 LINE L1 -1897 4249 3719 231 36 0 0 chr9 95205015 95205043 -47066401 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 5035 238 72 37 chr9 95205043 95206285 -47065159 - L1M4 LINE L1 -2427 3719 2386 1705 119 8 8 chr9 95206719 95206970 -47064474 - AluSq SINE Alu -29 284 34 1751 134 11 0 chr9 95207087 95207349 -47064095 + AluSq SINE Alu 45 309 -4 765 110 110 0 chr9 95207351 95207469 -47063975 - MER57B LTR ERV1 -173 261 131 22 0 0 0 chr9 95207810 95207832 -47063612 + AT_rich Low_complexity Low_complexity 1 22 0 2014 128 28 0 chr9 95258525 95258813 -47012631 - AluSq SINE Alu -17 296 1 1857 169 0 20 chr9 95258813 95259114 -47012330 - AluSx SINE Alu -17 295 1 27 29 0 0 chr9 95259281 95259315 -47012129 + AT_rich Low_complexity Low_complexity 1 34 0 1262 96 141 0 chr9 95259674 95259881 -47011563 - AluSg/x SINE Alu 0 314 83 2493 82 0 0 chr9 95260089 95260395 -47011049 - AluY SINE Alu -5 306 1 1779 151 86 18 chr9 95260549 95260886 -47010558 - MER46B DNA MER2_type 0 236 2 25 51 0 0 chr9 95262125 95262164 -47009280 + AT_rich Low_complexity Low_complexity 1 39 0 241 255 66 104 chr9 95263405 95263664 -47007780 - L1MC4 LINE L1 -30 8012 7764 335 115 0 0 chr9 95263675 95263727 -47007717 - Alu SINE Alu -9 293 242 2157 114 3 0 chr9 95263989 95264279 -47007165 - AluSx SINE Alu -21 291 1 2544 11 0 0 chr9 95264594 95264866 -47006578 - AluYa5 SINE Alu -4 307 36 1993 144 3 13 chr9 95267642 95267948 -47003496 - AluSx SINE Alu -9 303 1 352 238 143 40 chr9 95269000 95269126 -47002318 - L1ME4a LINE L1 -6 6115 5977 1121 126 6 55 chr9 95269494 95269677 -47001767 - FAM SINE Alu -1 174 1 2308 109 0 3 chr9 95270029 95270332 -47001112 - AluSx SINE Alu -10 302 1 1888 183 0 7 chr9 95270772 95271073 -47000371 + AluJb SINE Alu 2 300 -12 3301 165 11 106 chr9 95271206 95271472 -46999972 - L1MB7 LINE L1 -138 6046 5756 1615 136 8 23 chr9 95271472 95271730 -46999714 - AluJo SINE Alu -58 254 1 3301 165 11 106 chr9 95271730 95271977 -46999467 - L1MB7 LINE L1 -428 5756 5487 2032 125 26 33 chr9 95271977 95272282 -46999162 - AluSx SINE Alu 0 312 10 3301 165 11 106 chr9 95272282 95272619 -46998825 - L1MB7 LINE L1 -697 5487 5296 2372 110 0 0 chr9 95272619 95272919 -46998525 - AluSx SINE Alu -12 300 1 3301 165 11 106 chr9 95272919 95272986 -46998458 - L1MB7 LINE L1 -888 5296 5224 733 269 108 6 chr9 95272978 95273294 -46998150 + L1ME1 LINE L1 5815 6162 -4 * 274 357 209 9 chr9 95273992 95274412 -46997032 + L2 LINE L2 2236 2739 -575 392 286 134 8 chr9 95274590 95274709 -46996735 + L2 LINE L2 3162 3295 -18 2529 80 3 0 chr9 95274800 95275112 -46996332 + AluSp SINE Alu 1 313 0 252 309 0 0 chr9 95275452 95275520 -46995924 + MIR SINE MIR 94 161 -101 198 0 0 0 chr9 95275977 95275999 -46995445 + (A)n Simple_repeat Simple_repeat 1 22 0 30 69 0 0 chr9 95277387 95277445 -46993999 + GC_rich Low_complexity Low_complexity 1 58 0 217 272 68 58 chr9 95279660 95279763 -46991681 + MIR3 SINE MIR 90 193 -15 943 220 63 22 chr9 95279864 95280132 -46991312 - L1MD3 LINE L1 -8 7987 7709 275 217 48 0 chr9 95280143 95280226 -46991218 + MER113 DNA MER1_type? 131 217 -304 185 228 133 95 chr9 95281385 95281626 -46989818 - L2 LINE L2 -559 2755 2506 4867 185 20 20 chr9 95283446 95284365 -46987079 - L1MB5 LINE L1 0 6174 5255 2452 99 3 0 chr9 95284365 95284677 -46986767 - AluSp SINE Alu 0 313 1 4867 185 20 20 chr9 95284677 95285590 -46985854 - L1MB5 LINE L1 -919 5255 4344 185 276 92 0 chr9 95287302 95287378 -46984066 - L2 LINE L2 -17 3255 3173 2283 115 0 3 chr9 95289134 95289439 -46982005 + AluSg SINE Alu 1 304 -6 272 265 0 29 chr9 95289739 95289807 -46981637 + L3 LINE CR1 1336 1401 -176 643 208 58 48 chr9 95289850 95290057 -46981387 - MER20 DNA MER1_type -2 217 9 239 259 247 29 chr9 95290540 95290783 -46980661 - L1MC/D LINE L1 -2113 5695 5400 487 244 17 0 chr9 95291099 95291218 -46980226 - L1MD3 LINE L1 -7 7988 7868 309 250 108 17 chr9 95291321 95291441 -46980003 - L1MC3 LINE L1 -264 7521 7391 312 27 0 0 chr9 95293606 95293643 -46977801 + (A)n Simple_repeat Simple_repeat 1 37 0 240 343 69 0 chr9 95293808 95293910 -46977534 - L3 LINE CR1 -507 1070 962 23 78 0 0 chr9 95294108 95294159 -46977285 + AT_rich Low_complexity Low_complexity 1 51 0 315 348 22 36 chr9 95294173 95294311 -46977133 + L1ME4a LINE L1 5746 5881 -240 453 84 127 0 chr9 95295350 95295421 -46976023 + MADE1 DNA Mariner 1 80 0 202 213 0 0 chr9 95296884 95296931 -46974513 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 1321 107 11 0 chr9 95297270 95297447 -46973997 - AluSg/x SINE Alu 0 312 134 2427 76 10 0 chr9 95297447 95297750 -46973694 - AluY SINE Alu -5 306 1 2391 79 3 16 chr9 95300687 95301004 -46970440 - AluSq SINE Alu 0 313 1 322 274 12 0 chr9 95301612 95301696 -46969748 - L1ME LINE L1 -458 5663 5579 201 318 98 38 chr9 95301742 95301978 -46969466 + L2 LINE L2 2810 3059 -254 415 336 69 0 chr9 95302985 95303217 -46968227 - MARNA DNA Mariner -60 526 279 352 336 70 0 chr9 95303625 95303753 -46967691 + L2 LINE L2 3123 3259 -13 1899 125 7 0 chr9 95304602 95304881 -46966563 + AluSx SINE Alu 1 281 -31 520 156 165 0 chr9 95305052 95305161 -46966283 - MER7A DNA MER2_type -217 129 5 937 207 84 59 chr9 95305164 95305521 -46965923 - L1MD3 LINE L1 -952 7043 6678 231 218 0 0 chr9 95305619 95305674 -46965770 - L1MC4 LINE L1 -1 8041 7987 260 281 105 41 chr9 95305686 95305857 -46965587 - L1MC4 LINE L1 -193 7849 7668 531 268 58 100 chr9 95306157 95306538 -46964906 - L1MC4a LINE L1 -964 6844 6480 2170 85 23 10 chr9 95306871 95307176 -46964268 - AluSq SINE Alu -4 309 1 281 307 0 0 chr9 95307805 95307880 -46963564 - MER58A DNA MER1_type 0 112 38 534 253 67 0 chr9 95307905 95308083 -46963361 - L1MC4 LINE L1 -503 7539 7350 257 222 56 56 chr9 95308256 95308346 -46963098 - L2 LINE L2 -62 3251 3162 2003 62 7 26 chr9 95309205 95309477 -46961967 - AluY SINE Alu -21 290 24 1185 120 30 5 chr9 95309498 95309698 -46961746 + L1MB3 LINE L1 5978 6182 -1 2343 93 0 0 chr9 95309851 95310163 -46961281 + AluSx SINE Alu 1 312 0 194 297 39 39 chr9 95310789 95310917 -46960527 - L2 LINE L2 -223 3049 2922 180 135 0 0 chr9 95312017 95312054 -46959390 + (CCCCCG)n Simple_repeat Simple_repeat 5 41 0 24 32 0 0 chr9 95312542 95312573 -46958871 + GC_rich Low_complexity Low_complexity 1 31 0 329 179 137 21 chr9 95314576 95314671 -46956773 + MIR SINE MIR 128 233 -29 195 42 0 0 chr9 95317508 95317532 -46953912 + (TA)n Simple_repeat Simple_repeat 1 24 0 193 294 20 0 chr9 95320569 95320620 -46950824 + MIR SINE MIR 176 227 -35 5776 146 23 15 chr9 95320839 95321820 -46949624 - Tigger1 DNA MER2_type -63 2355 1367 592 251 58 31 chr9 95321916 95322107 -46949337 - MLT1D LTR MaLR -309 196 1 2137 97 0 0 chr9 95323439 95323729 -46947715 + AluSg SINE Alu 1 290 -20 2037 145 3 0 chr9 95324603 95324914 -46946530 - AluSx SINE Alu 0 312 1 201 200 250 0 chr9 95325206 95325266 -46946178 - L2 LINE L2 -1 3271 3197 603 306 12 0 chr9 95325416 95325586 -46945858 + L2 LINE L2 2617 2788 -526 372 43 0 0 chr9 95327368 95327414 -46944030 + (CA)n Simple_repeat Simple_repeat 2 47 0 3621 192 68 7 chr9 95327806 95328599 -46942845 + L1MC1 LINE L1 5384 6214 -119 227 129 43 57 chr9 95328599 95328669 -46942775 + L1MC2 LINE L1 6274 6342 -2 237 334 114 43 chr9 95328698 95329066 -46942378 - L2 LINE L2 -40 3232 2839 486 241 155 48 chr9 95329338 95329860 -46941584 - L1MC3 LINE L1 -240 5922 5288 2535 58 0 0 chr9 95329860 95330168 -46941276 - AluY SINE Alu -3 308 1 486 241 155 48 chr9 95330168 95330386 -46941058 - L1MC3 LINE L1 -874 5288 5095 436 246 22 38 chr9 95330389 95330572 -46940872 + L1MC5 LINE L1 7732 7911 -50 418 292 186 28 chr9 95330603 95331244 -46940200 - L1MC3 LINE L1 -1053 5093 4352 2197 108 0 19 chr9 95331394 95331710 -46939734 - AluSg SINE Alu 0 310 1 496 338 85 25 chr9 95331852 95332322 -46939122 - L2 LINE L2 -571 2743 2246 22 0 0 0 chr9 95334341 95334363 -46937081 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr9 95334713 95334744 -46936700 + AT_rich Low_complexity Low_complexity 1 31 0 238 244 49 37 chr9 95335478 95335560 -46935884 - AluSc SINE Alu -216 83 1 447 264 29 21 chr9 95335849 95335989 -46935455 - L3 LINE CR1 -155 1422 1282 1873 144 3 0 chr9 95336602 95336900 -46934544 - AluSx SINE Alu -13 299 1 218 217 50 0 chr9 95336904 95336964 -46934480 + T-rich Low_complexity Low_complexity 3 65 0 181 325 0 39 chr9 95337997 95338074 -46933370 - MER5B DNA MER1_type -19 159 86 222 288 12 12 chr9 95338119 95338199 -46933245 + (TG)n Simple_repeat Simple_repeat 1 80 0 2237 127 22 30 chr9 95338800 95339170 -46932274 - THE1C LTR MaLR -8 367 1 256 201 70 54 chr9 95341841 95341954 -46929490 + MIR SINE MIR 35 149 -63 388 247 31 10 chr9 95342196 95342293 -46929151 + MER5A DNA MER1_type 91 189 0 1281 114 100 5 chr9 95343638 95343848 -46927596 - MER30 DNA MER1_type 0 230 1 2081 88 7 7 chr9 95344057 95344354 -46927090 - AluSq SINE Alu -16 297 1 1341 191 35 11 chr9 95344697 95344980 -46926464 - AluJo SINE Alu -22 290 1 925 204 0 0 chr9 95345017 95345174 -46926270 + FAM SINE Alu 1 157 -18 21 0 0 0 chr9 95345318 95345339 -46926105 + AT_rich Low_complexity Low_complexity 1 21 0 1227 186 134 0 chr9 95346148 95346423 -46925021 + AluJo SINE Alu 1 312 0 1837 153 30 3 chr9 95346618 95346913 -46924531 + AluSx SINE Alu 1 303 -9 218 237 171 0 chr9 95349397 95349473 -46921971 + MIR SINE MIR 46 134 -128 216 238 48 95 chr9 95350116 95350221 -46921223 + MER5A DNA MER1_type 85 184 -5 192 229 0 42 chr9 95352164 95352212 -46919232 + MIR SINE MIR 74 119 -143 2328 112 0 0 chr9 95352325 95352629 -46918815 - AluSx SINE Alu -4 308 5 242 288 0 0 chr9 95353341 95353414 -46918030 - L1ME LINE L1 -239 5882 5810 212 163 0 0 chr9 95355327 95355370 -46916074 + A-rich Low_complexity Low_complexity 4 46 0 456 156 46 28 chr9 95355405 95355514 -46915930 - Charlie2 DNA MER1_type -108 2754 2644 489 272 71 5 chr9 95355548 95355732 -46915712 + MIR SINE MIR 49 244 -18 1433 230 65 13 chr9 95355752 95356139 -46915305 - Charlie2 DNA MER1_type -599 2263 1857 222 37 0 0 chr9 95357792 95357819 -46913625 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 244 243 191 63 chr9 95359985 95360174 -46911270 + MIR SINE MIR 50 262 0 540 0 0 0 chr9 95360409 95360469 -46910975 + (CA)n Simple_repeat Simple_repeat 2 61 0 1935 134 13 17 chr9 95360676 95360975 -46910469 + AluSx SINE Alu 1 298 -14 981 204 19 10 chr9 95363061 95363267 -46908177 + MER82 DNA MER2_type 4 211 -442 1627 104 5 9 chr9 95363367 95363588 -46907856 + AluJb SINE Alu 76 295 -17 600 184 102 0 chr9 95363590 95363737 -46907707 + Charlie5 DNA MER1_type 2424 2585 -27 1816 170 7 0 chr9 95364659 95364976 -46906468 - AluJb SINE Alu 0 319 1 208 148 56 0 chr9 95365019 95365073 -46906371 + (TTAA)n Simple_repeat Simple_repeat 1 57 0 286 105 0 0 chr9 95365148 95365186 -46906258 + tRNA-Cys-TGC tRNA tRNA 1 38 -37 744 70 193 0 chr9 95365258 95365372 -46906072 - MER85 DNA T2_type -3 136 1 207 266 85 32 chr9 95365657 95365751 -46905693 + MIR SINE MIR 153 251 -11 2361 109 0 0 chr9 95365934 95366245 -46905199 - AluSx SINE Alu 0 312 2 317 233 90 108 chr9 95366643 95366866 -46904578 + MER20 DNA MER1_type 1 219 0 2453 196 131 20 chr9 95370987 95371654 -46899790 + L1MD2 LINE L1 5426 6092 -267 2369 82 0 0 chr9 95371826 95372118 -46899326 - AluSg SINE Alu -18 292 1 328 287 59 15 chr9 95373232 95373368 -46898076 - MER112 DNA MER1_type -27 233 92 190 302 93 23 chr9 95373865 95373951 -46897493 + L2 LINE L2 3132 3223 -49 1087 151 21 21 chr9 95374343 95374529 -46896915 + MER20 DNA MER1_type 34 219 0 2170 124 17 0 chr9 95374975 95375274 -46896170 - AluSg SINE Alu -6 304 1 230 262 229 8 chr9 95375275 95375397 -46896047 + L2 LINE L2 3161 3309 -4 22 0 0 0 chr9 95376320 95376342 -46895102 + AT_rich Low_complexity Low_complexity 1 22 0 1305 186 5 5 chr9 95376365 95376586 -46894858 + MER46A DNA MER2_type 16 236 0 649 148 8 31 chr9 95376586 95376714 -46894730 - MER67C LTR ERV1 -85 625 501 3922 164 37 47 chr9 95376840 95376931 -46894513 - L1MB3 LINE L1 -1 6182 6092 2077 114 10 14 chr9 95376931 95377221 -46894223 - AluSx SINE Alu -23 289 1 3922 164 37 47 chr9 95377221 95377942 -46893502 - L1MB3 LINE L1 -91 6092 5378 516 208 81 20 chr9 95378540 95378689 -46892755 - MIR SINE MIR -1 261 104 270 197 33 0 chr9 95380610 95380671 -46890773 - MER53 DNA DNA -126 63 1 416 135 39 34 chr9 95380864 95381042 -46890402 + (TG)n Simple_repeat Simple_repeat 2 180 0 200 252 148 0 chr9 95381305 95381420 -46890024 + MIR SINE MIR 53 184 -78 475 239 0 0 chr9 95381577 95381669 -46889775 - 5S rRNA rRNA -28 93 2 349 285 93 7 chr9 95382769 95382920 -46888524 - L1MEd LINE L1 -4963 1156 993 2321 104 3 3 chr9 95383022 95383329 -46888115 - AluSx SINE Alu -5 307 1 2460 54 47 0 chr9 95385229 95385526 -46885918 - AluY SINE Alu 0 311 1 4325 177 57 44 chr9 95385779 95385990 -46885454 - L1MC1 LINE L1 -11 6613 6406 866 202 0 18 chr9 95385990 95386158 -46885286 - FRAM SINE Alu -1 165 1 4325 177 57 44 chr9 95386158 95386752 -46884692 - L1MC1 LINE L1 -218 6406 5821 1696 156 30 17 chr9 95386752 95387047 -46884397 - AluJb SINE Alu -13 299 1 4325 177 57 44 chr9 95387047 95388029 -46883415 - L1MC1 LINE L1 -803 5821 4834 2063 122 0 30 chr9 95388029 95388357 -46883087 - AluJb SINE Alu 0 319 1 4325 177 57 44 chr9 95388357 95388647 -46882797 - L1MC1 LINE L1 -1790 4834 4549 662 83 0 33 chr9 95388669 95388789 -46882655 + (GA)n Simple_repeat Simple_repeat 1 116 0 220 0 27 54 chr9 95388788 95388825 -46882619 + (GGAAA)n Simple_repeat Simple_repeat 4 39 0 * 566 191 29 0 chr9 95388867 95388972 -46882472 - L1MC1 LINE L1 -1989 4437 4330 882 158 0 0 chr9 95388975 95389102 -46882342 + FRAM SINE Alu 21 147 -29 26 0 0 0 chr9 95389102 95389128 -46882316 + AT_rich Low_complexity Low_complexity 1 26 0 5814 186 118 34 chr9 95389141 95390472 -46880972 - L1MC1 LINE L1 -2401 4025 2807 2108 141 20 0 chr9 95390472 95390776 -46880668 - AluSg SINE Alu 0 310 1 5814 186 118 34 chr9 95390776 95391401 -46880043 - L1MC1 LINE L1 -3619 2807 2236 219 69 0 0 chr9 95391401 95391430 -46880014 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5814 186 118 34 chr9 95391430 95391451 -46879993 - L1MC1 LINE L1 -4190 2236 814 2254 102 3 3 chr9 95391913 95392208 -46879236 + AluSq SINE Alu 1 295 -18 23 0 0 0 chr9 95392229 95392252 -46879192 + AT_rich Low_complexity Low_complexity 1 23 0 1837 164 0 14 chr9 95392297 95392589 -46878855 - AluJo SINE Alu -19 293 6 509 278 221 47 chr9 95392809 95393324 -46878120 - L1MC4a LINE L1 -1869 5939 5335 1866 146 9 53 chr9 95394328 95394651 -46876793 - AluJo SINE Alu -3 309 1 864 204 0 0 chr9 95395548 95395781 -46875663 + (ATG)n Simple_repeat Simple_repeat 1 233 0 1118 110 10 14 chr9 95395784 95396003 -46875441 + (ATGGTG)n Simple_repeat Simple_repeat 1 218 0 272 217 65 92 chr9 95396108 95396292 -46875152 - L1 LINE L1 -2111 4035 3857 1981 234 51 18 chr9 95396554 95397100 -46874344 - L1 LINE L1 -2296 3850 3287 2202 114 0 13 chr9 95397400 95397699 -46873745 - AluSx SINE Alu -17 295 1 233 258 0 11 chr9 95400825 95400897 -46870547 + (TG)n Simple_repeat Simple_repeat 1 73 -15 2102 167 17 6 chr9 95400897 95401257 -46870187 - MLT1A1 LTR MaLR 0 365 2 233 258 0 11 chr9 95401257 95401273 -46870171 + (TG)n Simple_repeat Simple_repeat 73 88 0 229 129 81 0 chr9 95402129 95402191 -46869253 + MIR SINE MIR 81 147 -61 201 358 12 25 chr9 95403217 95403298 -46868146 - L2 LINE L2 -1 3271 3192 335 268 120 28 chr9 95403418 95403560 -46867884 - MIR SINE MIR -58 204 50 832 214 50 9 chr9 95405577 95405797 -46865647 - L1MCa LINE L1 -4734 2223 1995 * 4679 197 42 19 chr9 95405794 95407215 -46864229 - L1MB8 LINE L1 0 6178 4692 2261 106 0 3 chr9 95407215 95407516 -46863928 - AluSg SINE Alu -10 300 1 4679 197 42 19 chr9 95407516 95408125 -46863319 - L1MB8 LINE L1 -1486 4692 4098 1217 281 56 11 chr9 95408124 95408573 -46862871 - L1MCa LINE L1 -6338 521 53 * 2489 214 47 33 chr9 95408589 95409801 -46861643 - L1MCb LINE L1 -4851 1194 387 992 224 40 25 chr9 95409806 95410083 -46861361 - L1MCb LINE L1 -5762 283 3 2504 228 37 8 chr9 95410116 95410857 -46860587 - L1M LINE L1 -828 5318 4567 788 317 149 38 chr9 95410860 95411681 -46859763 - L1MEc LINE L1 -4518 1755 767 216 350 217 5 chr9 95412196 95412602 -46858842 + L2 LINE L2 2261 2752 -562 2341 76 3 3 chr9 95412603 95412904 -46858540 + AluSp SINE Alu 1 301 -12 183 235 59 20 chr9 95413269 95413320 -46858124 + MIR SINE MIR 78 130 -78 363 324 0 0 chr9 95415692 95415800 -46855644 - MIR SINE MIR -1 261 154 722 306 92 39 chr9 95415951 95416109 -46855335 - L1MC5 LINE L1 -32 7929 7781 2106 124 3 0 chr9 95416109 95416399 -46855045 + AluSx SINE Alu 4 294 -18 722 306 92 39 chr9 95416399 95416803 -46854641 - L1MC5 LINE L1 -180 7781 7337 250 268 102 32 chr9 95417019 95417176 -46854268 - L1MC5 LINE L1 -801 7160 6993 448 202 48 8 chr9 95417198 95417322 -46854122 - MER53 DNA DNA -59 130 2 338 658 0 0 chr9 95417865 95418023 -46853421 + T-rich Low_complexity Low_complexity 1 158 0 207 281 8 31 chr9 95418196 95418324 -46853120 + (CA)n Simple_repeat Simple_repeat 1 125 0 337 268 12 33 chr9 95418625 95418958 -46852486 + (CA)n Simple_repeat Simple_repeat 1 325 0 795 158 0 43 chr9 95419594 95419733 -46851711 + FLAM_C SINE Alu 1 133 0 2131 123 7 0 chr9 95420915 95421215 -46850229 - AluSg SINE Alu -8 302 1 447 258 84 73 chr9 95423697 95424065 -46847379 - L1MC5 LINE L1 -175 7786 7415 231 185 96 73 chr9 95425294 95425398 -46846046 + MIR3 SINE MIR 42 160 -48 194 313 102 20 chr9 95427842 95427989 -46843455 + MIR3 SINE MIR 9 167 -41 678 221 0 0 chr9 95429999 95430171 -46841273 + (TGGA)n Simple_repeat Simple_repeat 4 175 0 834 189 0 0 chr9 95430196 95430376 -46841068 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 743 199 4 4 chr9 95430387 95430658 -46840786 + (TGGA)n Simple_repeat Simple_repeat 1 271 0 992 192 0 2 chr9 95430672 95431199 -46840245 + (TGGA)n Simple_repeat Simple_repeat 1 525 0 231 167 0 0 chr9 95431215 95431257 -46840187 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 432 255 0 0 chr9 95431276 95431421 -46840023 + (TGGA)n Simple_repeat Simple_repeat 4 148 0 278 232 43 51 chr9 95432437 95432575 -46838869 + (CACAC)n Simple_repeat Simple_repeat 2 138 0 2147 75 25 0 chr9 95435407 95435723 -46835721 + AluY SINE Alu 1 323 0 379 309 24 8 chr9 95436426 95436549 -46834895 - MIR SINE MIR -115 147 23 298 275 114 9 chr9 95439156 95439289 -46832155 + MER5B DNA MER1_type 47 170 -8 397 302 0 39 chr9 95439784 95439966 -46831478 + G-rich Low_complexity Low_complexity 4 178 0 346 325 0 43 chr9 95440054 95440242 -46831202 + G-rich Low_complexity Low_complexity 1 180 0 253 387 0 0 chr9 95440985 95441140 -46830304 + (TG)n Simple_repeat Simple_repeat 1 155 0 454 352 52 39 chr9 95441225 95441535 -46829909 + L1M4 LINE L1 3089 3402 -2744 246 379 0 22 chr9 95441678 95441918 -46829526 + G-rich Low_complexity Low_complexity 1 234 0 313 354 0 22 chr9 95441930 95442111 -46829333 + G-rich Low_complexity Low_complexity 3 179 0 342 276 0 0 chr9 95445726 95445842 -46825602 + (CCA)n Simple_repeat Simple_repeat 1 116 0 21 0 0 0 chr9 95447945 95447966 -46823478 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr9 95448489 95448517 -46822927 + AT_rich Low_complexity Low_complexity 1 28 0 191 267 0 0 chr9 95450674 95450719 -46820725 - L2 LINE L2 -8 3305 3261 * 198 351 92 15 chr9 95450686 95450817 -46820627 - MIR SINE MIR -14 248 108 357 338 192 0 chr9 95451627 95451778 -46819666 - MIR SINE MIR -64 198 19 303 202 107 0 chr9 95452604 95452688 -46818756 - L2 LINE L2 -335 2978 2886 201 256 232 12 chr9 95452779 95452861 -46818583 + MIR SINE MIR 77 176 -86 252 207 0 0 chr9 95452952 95453010 -46818434 + MIR SINE MIR 74 131 -77 259 139 83 56 chr9 95456825 95456897 -46814547 + Charlie5 DNA MER1_type 38 111 -2501 33 0 0 0 chr9 95456914 95456947 -46814497 + AT_rich Low_complexity Low_complexity 1 33 0 1071 274 97 7 chr9 95456953 95457599 -46813845 + L1M4 LINE L1 3144 3894 -2252 237 65 0 0 chr9 95457916 95457947 -46813497 + (ATG)n Simple_repeat Simple_repeat 2 32 0 308 340 64 0 chr9 95457985 95458141 -46813303 - MIR SINE MIR -29 233 68 649 312 44 13 chr9 95458652 95458969 -46812475 - L1ME LINE L1 -304 5817 5491 2196 108 7 23 chr9 95459178 95459483 -46811961 - AluSp SINE Alu -13 300 1 3025 62 33 12 chr9 95460136 95460556 -46810888 - MLT2A1 LTR ERVL -2 442 14 416 374 0 6 chr9 95460895 95461074 -46810370 + (CA)n Simple_repeat Simple_repeat 1 178 0 269 318 0 16 chr9 95461074 95461203 -46810241 - L1MC4a LINE L1 -1866 5942 5816 410 205 12 12 chr9 95461258 95461429 -46810015 + (TG)n Simple_repeat Simple_repeat 2 172 0 1072 156 6 0 chr9 95461588 95461755 -46809689 + AluSq SINE Alu 138 305 -8 296 93 121 24 chr9 95461763 95461847 -46809597 + L1MB5 LINE L1 6073 6180 0 412 289 114 79 chr9 95461861 95462405 -46809039 + L1MD1 LINE L1 293 855 -5685 5716 228 29 23 chr9 95462554 95464602 -46806842 + L1MD1 LINE L1 4033 6104 -532 2135 105 0 31 chr9 95464602 95464896 -46806548 - AluSc SINE Alu -6 303 19 5716 228 29 23 chr9 95464896 95465432 -46806012 + L1MD1 LINE L1 6104 6635 -1 228 162 0 0 chr9 95466524 95466561 -46804883 - MLT2B1 LTR ERVL -7 508 472 1706 163 3 40 chr9 95466601 95466901 -46804543 - AluJb SINE Alu 0 312 24 244 103 0 0 chr9 95466927 95466966 -46804478 - L1ME LINE L1 -726 5438 5400 362 21 21 0 chr9 95466966 95467013 -46804431 + (CA)n Simple_repeat Simple_repeat 2 49 0 1674 248 64 15 chr9 95467062 95467518 -46803926 - MLT2B1 LTR ERVL -42 478 1 379 328 50 25 chr9 95467840 95468081 -46803363 + MLT1K LTR MaLR 316 562 -26 182 295 0 11 chr9 95468373 95468468 -46802976 + (CA)n Simple_repeat Simple_repeat 2 95 0 901 106 53 7 chr9 95469104 95469391 -46802053 + (TAGA)n Simple_repeat Simple_repeat 1 300 0 533 103 52 13 chr9 95469537 95469692 -46801752 + (TAGA)n Simple_repeat Simple_repeat 2 162 0 296 216 63 45 chr9 95470281 95470392 -46801052 - MIR3 SINE MIR -27 181 69 185 259 0 52 chr9 95470966 95471024 -46800420 + MIR SINE MIR 195 249 -13 1901 274 43 26 chr9 95471281 95471861 -46799583 + MLT1G LTR MaLR 1 590 0 1204 154 30 7 chr9 95471861 95472217 -46799227 - Tigger1 DNA MER2_type 0 2418 1 217 295 231 0 chr9 95472241 95472319 -46799125 + MIR SINE MIR 49 144 -64 308 263 75 44 chr9 95472727 95472887 -46798557 + L1MD2 LINE L1 65 229 -6313 1656 250 94 30 chr9 95473028 95474441 -46797003 + L1MD2 LINE L1 1168 2786 -3858 2138 145 0 0 chr9 95474441 95474744 -46796700 + AluSx SINE Alu 1 303 -9 1656 250 94 30 chr9 95474744 95474884 -46796560 + L1MD2 LINE L1 2786 2916 -3728 360 107 0 0 chr9 95474985 95475041 -46796403 + Alu SINE Alu 242 297 -5 5362 243 27 26 chr9 95475043 95475154 -46796290 + L1MD2 LINE L1 3455 3564 -3080 1800 186 11 11 chr9 95475154 95475515 -46795929 + MLT1A1 LTR MaLR 5 365 0 5362 243 27 26 chr9 95475515 95477121 -46794323 + L1MD2 LINE L1 3564 5175 -1469 1877 160 21 64 chr9 95477125 95477513 -46793931 + MLT1B LTR MaLR 15 385 -5 2247 238 60 13 chr9 95477526 95478687 -46792757 + L1MD2 LINE L1 5174 6388 -469 198 359 24 29 chr9 95480145 95480315 -46791129 + L2 LINE L2 2855 3023 -290 2004 103 7 61 chr9 95480478 95480788 -46790656 + AluSc SINE Alu 7 299 -10 774 164 0 8 chr9 95480858 95480992 -46790452 + FLAM_C SINE Alu 1 133 0 517 252 116 27 chr9 95481192 95481495 -46789949 + MLT1G LTR MaLR 15 402 -188 416 307 53 11 chr9 95481648 95481837 -46789607 + LTR16C LTR ERVL 26 222 -269 342 252 19 10 chr9 95481857 95481960 -46789484 + LTR16C LTR ERVL 372 475 -16 180 0 0 0 chr9 95482712 95482732 -46788712 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 201 323 70 25 chr9 95484177 95484335 -46787109 - L2 LINE L2 -174 3098 2934 2080 119 0 34 chr9 95484396 95484689 -46786755 - AluSq SINE Alu -30 283 1 1495 231 64 24 chr9 95484860 95485280 -46786164 - L1ME1 LINE L1 -5 6161 5725 1075 221 102 33 chr9 95486807 95487200 -46784244 - MLT1D LTR MaLR -82 423 4 385 157 43 0 chr9 95490572 95490687 -46780757 + (CA)n Simple_repeat Simple_repeat 1 120 0 487 222 102 0 chr9 95490831 95490939 -46780505 - FLAM_C SINE Alu -23 120 2 686 222 6 0 chr9 95490939 95491110 -46780334 - L1ME1 LINE L1 -864 5282 5111 294 300 146 0 chr9 95491145 95491275 -46780169 - MIR SINE MIR -91 171 23 2613 57 0 0 chr9 95491469 95491768 -46779676 + AluY SINE Alu 1 299 -12 961 263 62 6 chr9 95493736 95494075 -46777369 + L1M4 LINE L1 2183 2540 -3606 781 246 60 15 chr9 95494745 95495098 -46776346 - MLT1J LTR MaLR -8 503 102 396 201 14 83 chr9 95495547 95495691 -46775753 + MIR SINE MIR 13 146 -116 210 251 122 107 chr9 95495740 95496003 -46775441 - L2 LINE L2 0 3272 3006 1710 220 42 15 chr9 95496083 95496487 -46774957 - MLT1C LTR MaLR 0 467 53 1873 192 0 0 chr9 95496509 95496811 -46774633 - AluJb SINE Alu -10 302 1 1834 231 50 7 chr9 95496838 95497262 -46774182 + MLT1F1 LTR MaLR 114 555 -12 237 159 0 0 chr9 95500377 95500421 -46771023 + (TG)n Simple_repeat Simple_repeat 1 44 0 934 281 105 7 chr9 95500992 95501402 -46770042 + L1ME3A LINE L1 5501 5950 -220 1729 209 54 9 chr9 95502322 95502767 -46768677 + MLT1C LTR MaLR 2 466 -1 261 163 12 25 chr9 95503058 95503138 -46768306 + CT-rich Low_complexity Low_complexity 1 79 0 382 250 44 56 chr9 95503639 95503799 -46767645 + MIR SINE MIR 49 206 -56 991 294 0 8 chr9 95504060 95504325 -46767119 + LTR16C LTR ERVL 221 483 -8 331 291 37 8 chr9 95504383 95504517 -46766927 + L2 LINE L2 2391 2528 -786 477 235 56 12 chr9 95504517 95504679 -46766765 + L1MCa LINE L1 1410 1578 -4848 5023 153 31 8 chr9 95504695 95505527 -46765917 + L1MC2 LINE L1 5485 6335 -9 5187 203 23 7 chr9 95505530 95506547 -46764897 + L1MCa LINE L1 5 1005 -5421 243 0 0 0 chr9 95506547 95506574 -46764870 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5187 203 23 7 chr9 95506574 95506757 -46764687 + L1MCa LINE L1 1005 3978 -2448 6777 120 9 32 chr9 95506759 95508347 -46763097 + L1PA13 LINE L1 4615 6155 -8 4182 234 25 13 chr9 95508502 95509651 -46761793 - L1MCa LINE L1 -2554 3872 2710 5080 105 3 1 chr9 95509651 95510366 -46761078 + L1PA8 LINE L1 5424 6139 -33 669 184 17 39 chr9 95510531 95510710 -46760734 - L1MCa LINE L1 -4508 1918 1744 465 273 47 0 chr9 95510681 95510809 -46760635 - L1P LINE L1 -2215 4211 4078 * 941 254 43 97 chr9 95510786 95511302 -46760142 + L1M4 LINE L1 3411 3898 -2248 6645 32 0 5 chr9 95511324 95512100 -46759344 - L1PA5 LINE L1 -7 6147 5376 485 209 27 0 chr9 95512117 95512227 -46759217 + L1M4 LINE L1 3914 4026 -2120 2052 129 7 0 chr9 95512227 95512514 -46758930 + AluSq SINE Alu 1 289 -24 250 49 82 0 chr9 95512514 95512575 -46758869 + (TA)n Simple_repeat Simple_repeat 1 66 0 3172 224 16 13 chr9 95512692 95512735 -46758709 + L1M4 LINE L1 3807 3848 -2298 2085 102 3 75 chr9 95512735 95513067 -46758377 + AluSx SINE Alu 5 312 0 3172 224 16 13 chr9 95513067 95513777 -46757667 + L1M4 LINE L1 3848 4562 -1584 3693 167 80 25 chr9 95513836 95513993 -46757451 - MER21B LTR ERV1 -63 800 653 1960 143 0 0 chr9 95513993 95514272 -46757172 + AluSx SINE Alu 1 279 -33 306 0 0 0 chr9 95514272 95514306 -46757138 + (CA)n Simple_repeat Simple_repeat 1 34 0 3693 167 80 25 chr9 95514306 95514859 -46756585 - MER21B LTR ERV1 -209 654 50 3023 170 31 30 chr9 95514859 95515466 -46755978 - MER21-int LTR ERV1 -360 3831 3224 2208 55 7 21 chr9 95515467 95515757 -46755687 - AluY SINE Alu 0 311 26 12244 173 19 68 chr9 95515775 95519839 -46751605 - L1PB3 LINE L1 -7 6204 2356 2168 163 59 3 chr9 95519839 95520194 -46751250 - THE1C LTR MaLR 0 375 1 10001 115 29 42 chr9 95520199 95521778 -46749666 - THE1C-int LTR MaLR -5 1575 19 2389 148 30 6 chr9 95521796 95522162 -46749282 - THE1C LTR MaLR 0 375 1 2757 207 24 11 chr9 95522162 95522870 -46748574 - L1PB3 LINE L1 -3843 2360 1603 4019 96 2 4 chr9 95522870 95523381 -46748063 - MER9 LTR ERVK 0 511 2 2757 207 24 11 chr9 95523381 95523408 -46748036 - L1PB3 LINE L1 -4600 1603 1578 7817 98 12 6 chr9 95523408 95524763 -46746681 - HERVK9 LTR ERVK -26 8033 4623 929 57 0 32 chr9 95524737 95524861 -46746583 - HERVK9 LTR ERVK -2085 3831 3712 * 13717 57 4 5 chr9 95524861 95526538 -46744906 - HERVK9 LTR ERVK -3130 2786 1113 4267 90 7 7 chr9 95526539 95527107 -46744337 - HERVK9 LTR ERVK -5348 568 1 3844 117 0 4 chr9 95527107 95527620 -46743824 - MER9 LTR ERVK 0 511 1 5723 157 28 9 chr9 95527621 95528363 -46743081 - L1PB3 LINE L1 -4622 1582 856 324 0 0 0 chr9 95528363 95528399 -46743045 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 5723 157 28 9 chr9 95528399 95528948 -46742496 - L1PB3 LINE L1 -5348 856 121 1205 152 129 0 chr9 95528948 95529158 -46742286 - MER21B-int LTR ERV1 -952 3239 3003 309 184 0 0 chr9 95529150 95529199 -46742245 - MER21B-int LTR ERV1 -4140 51 3 * 4598 179 43 36 chr9 95529204 95529443 -46742001 - MER21B LTR ERV1 0 863 627 2244 119 0 6 chr9 95529443 95529755 -46741689 - AluSg SINE Alu 0 310 1 4598 179 43 36 chr9 95529755 95530372 -46741072 - MER21B LTR ERV1 -236 627 1 3229 219 37 16 chr9 95530373 95531828 -46739616 + L1ME1 LINE L1 4561 6041 -125 364 165 16 157 chr9 95531928 95532007 -46739437 + L1ME1 LINE L1 6058 6116 -50 653 156 9 0 chr9 95532007 95532116 -46739328 - L1MA5A LINE L1 -10 6287 6178 364 165 16 157 chr9 95532116 95532157 -46739287 + L1ME1 LINE L1 6116 6161 -5 274 290 143 66 chr9 95532158 95532523 -46738921 + L2 LINE L2 2522 2914 -400 2175 109 0 3 chr9 95532871 95533182 -46738262 - AluSx SINE Alu 0 310 1 532 280 121 0 chr9 95533219 95533426 -46738018 + L1M4 LINE L1 2387 2618 -3528 203 292 80 35 chr9 95533469 95533582 -46737862 + L3 LINE CR1 429 546 -1031 765 231 74 10 chr9 95533828 95534031 -46737413 - L1ME3 LINE L1 -47 6115 5900 183 235 0 0 chr9 95534032 95534083 -46737361 + (TA)n Simple_repeat Simple_repeat 1 51 0 286 225 45 0 chr9 95534084 95534195 -46737249 + (TCTA)n Simple_repeat Simple_repeat 1 116 0 5030 157 10 43 chr9 95534231 95534333 -46737111 + L1MC1 LINE L1 4940 5044 -1289 2075 139 0 0 chr9 95534333 95534634 -46736810 + AluSx SINE Alu 1 301 -11 5030 157 10 43 chr9 95534634 95535719 -46735725 + L1MC1 LINE L1 5044 6087 -246 317 230 81 11 chr9 95535832 95535919 -46735525 - L2 LINE L2 -1 3312 3220 508 209 0 0 chr9 95535922 95536032 -46735412 + L1MC2 LINE L1 6083 6192 -152 435 305 157 20 chr9 95536353 95536760 -46734684 + L2 LINE L2 2850 3312 -1 2070 208 6 6 chr9 95536840 95537205 -46734239 - MLT1A1 LTR MaLR 0 365 1 1740 214 76 24 chr9 95537480 95538118 -46733326 + L1MC3 LINE L1 961 1811 -4615 995 148 27 10 chr9 95538120 95538478 -46732966 + L1MC2 LINE L1 5735 6229 -115 15534 132 41 5 chr9 95538478 95539969 -46731475 - Tigger1 DNA MER2_type 0 2418 811 2385 110 0 0 chr9 95539969 95540279 -46731165 - AluSg SINE Alu 0 310 1 15534 132 41 5 chr9 95540279 95541121 -46730323 - Tigger1 DNA MER2_type -1607 811 1 995 148 27 10 chr9 95541121 95541239 -46730205 + L1MC2 LINE L1 6229 6344 0 252 0 0 0 chr9 95541410 95541438 -46730006 + (TG)n Simple_repeat Simple_repeat 2 29 0 4937 241 86 9 chr9 95541444 95543542 -46727902 + L1MC3 LINE L1 1862 4123 -2303 1410 146 134 0 chr9 95543550 95543797 -46727647 + L1PA16 LINE L1 5884 6163 -3 1005 198 16 41 chr9 95543803 95544045 -46727399 + L1MC3 LINE L1 4122 4357 -2069 284 211 0 0 chr9 95544042 95544094 -46727350 + L1MC3 LINE L1 4994 5045 -1381 * 2141 173 23 117 chr9 95544100 95544674 -46726770 + MLT2B1 LTR ERVL 1 520 0 463 243 15 22 chr9 95544674 95544810 -46726634 + HERVL-B1 LTR ERVL 1 135 -5519 781 196 7 7 chr9 95544810 95544953 -46726491 + MLT1A2 LTR MaLR 232 374 0 3508 183 123 132 chr9 95544953 95545222 -46726222 + MLT1B-int LTR MaLR 1 271 -1100 3264 170 79 0 chr9 95545222 95545781 -46725663 - LTR26 LTR ERV1 0 603 1 3508 183 123 132 chr9 95545781 95546893 -46724551 + MLT1B-int LTR MaLR 271 1370 -1 1516 171 53 113 chr9 95546894 95547308 -46724136 + MLT1B LTR MaLR 1 389 -1 254 216 0 0 chr9 95547310 95547361 -46724083 + L1MC3 LINE L1 5049 5099 -1327 2258 61 4 0 chr9 95547364 95547641 -46723803 + AluY SINE Alu 2 279 -32 3401 208 23 10 chr9 95547658 95548779 -46722665 + L1MC3 LINE L1 5087 5681 -745 8787 185 83 32 chr9 95548789 95550405 -46721039 - MER109 Unknown Unknown -157 2275 546 2270 109 0 0 chr9 95550405 95550699 -46720745 - AluSg SINE Alu -16 294 1 8787 185 83 32 chr9 95550699 95550983 -46720461 - MER109 Unknown Unknown -1886 546 278 1295 203 101 11 chr9 95550997 95551362 -46720082 + L1MC3 LINE L1 6207 6604 -1461 619 225 79 48 chr9 95551352 95551579 -46719865 + L1MC3 LINE L1 7832 8065 0 * 26 50 0 0 chr9 95551593 95551633 -46719811 + AT_rich Low_complexity Low_complexity 1 40 0 273 57 0 0 chr9 95551660 95551668 -46719776 + (TG)n Simple_repeat Simple_repeat 1 43 0 273 57 0 0 chr9 95551668 95551703 -46719741 + (TG)n Simple_repeat Simple_repeat 2 36 0 2047 132 0 20 chr9 95551723 95552027 -46719417 - AluSx SINE Alu -14 298 1 386 264 85 0 chr9 95552027 95552158 -46719286 - L1M4 LINE L1 -1293 4853 4713 264 176 0 59 chr9 95552282 95552350 -46719094 + (TTGGGG)n Simple_repeat Simple_repeat 1 64 0 302 300 93 21 chr9 95552944 95553114 -46718330 + MIR SINE MIR 1 182 -63 2101 74 0 95 chr9 95555075 95555400 -46716044 - AluSg SINE Alu -16 294 1 386 341 123 15 chr9 95555718 95555979 -46715465 - L2 LINE L2 0 3313 3025 255 286 0 13 chr9 95556094 95556171 -46715273 - MLT1L LTR MaLR -225 390 315 491 233 102 44 chr9 95556984 95557190 -46714254 + L2 LINE L2 2851 3068 -245 438 244 129 24 chr9 95558602 95558811 -46712633 - MER113 DNA MER1_type? -236 285 55 188 373 63 8 chr9 95559524 95559650 -46711794 + MIR SINE MIR 17 149 -59 4272 167 66 26 chr9 95560125 95561284 -46710160 - L1MB7 LINE L1 -8 6176 4970 265 131 33 16 chr9 95561771 95561832 -46709612 + GA-rich Low_complexity Low_complexity 3 64 0 420 135 0 0 chr9 95561934 95562008 -46709436 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 180 221 44 73 chr9 95562012 95562080 -46709364 + L3b LINE CR1 1267 1332 -251 201 256 144 25 chr9 95562208 95562368 -46709076 + MIR3 SINE MIR 24 202 -6 284 306 19 19 chr9 95563650 95563758 -46707686 - L3 LINE CR1 -69 1508 1401 531 200 57 6 chr9 95564224 95564360 -46707084 + MLT1I LTR MaLR 18 166 -243 328 260 31 0 chr9 95564409 95564505 -46706939 + MLT1I LTR MaLR 309 407 -2 217 271 0 0 chr9 95564627 95564675 -46706769 + L2 LINE L2 3266 3313 0 203 258 169 39 chr9 95564804 95564982 -46706462 + L2 LINE L2 2854 3054 -218 1905 249 99 99 chr9 95565030 95566419 -46705025 - L1MC4 LINE L1 -1 8041 6653 242 175 0 0 chr9 95566897 95566937 -46704507 - MIR SINE MIR -117 145 106 189 191 157 45 chr9 95567270 95567359 -46704085 + MIR SINE MIR 85 183 -79 226 272 234 6 chr9 95568145 95568303 -46703141 - MER91A DNA MER1_type 0 196 3 234 191 21 0 chr9 95568631 95568678 -46702766 + CT-rich Low_complexity Low_complexity 1 48 0 248 330 46 9 chr9 95568831 95568940 -46702504 + L3 LINE CR1 1432 1544 -33 249 326 22 0 chr9 95569079 95569171 -46702273 + MIR SINE MIR 94 187 -75 302 373 33 0 chr9 95569372 95569584 -46701860 - MIR SINE MIR -27 235 17 294 224 131 19 chr9 95570333 95570440 -46701004 + MIR SINE MIR 25 143 -119 24 32 0 0 chr9 95571189 95571220 -46700224 + GC_rich Low_complexity Low_complexity 1 31 0 257 274 62 18 chr9 95572206 95572319 -46699125 - MIR SINE MIR -55 153 36 210 298 202 30 chr9 95572783 95572951 -46698493 + L2 LINE L2 3074 3270 -2 273 286 36 24 chr9 95574342 95574426 -46697018 - MIR SINE MIR -85 177 93 265 146 22 45 chr9 95575902 95575991 -46695453 + GA-rich Low_complexity Low_complexity 1 87 0 1131 104 58 0 chr9 95576007 95576180 -46695264 - AluSg/x SINE Alu 0 310 128 318 288 193 0 chr9 95577028 95577203 -46694241 + MER20B DNA MER1_type 4 213 -6 1191 127 0 0 chr9 95577690 95577856 -46693588 + AluSx SINE Alu 1 166 -146 275 331 24 16 chr9 95578831 95578955 -46692489 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 * 511 326 11 0 chr9 95578896 95579122 -46692322 + (CA)n Simple_repeat Simple_repeat 1 228 0 327 214 17 17 chr9 95579136 95579253 -46692191 + (CATA)n Simple_repeat Simple_repeat 1 117 0 292 281 67 0 chr9 95579362 95579451 -46691993 - MIR SINE MIR -113 149 55 2011 116 0 0 chr9 95579761 95580054 -46691390 + AluSx SINE Alu 20 312 0 5357 129 45 17 chr9 95580059 95580944 -46690500 + L1MA6 LINE L1 5390 6299 -1 347 279 115 29 chr9 95580989 95581301 -46690143 - L1MEc LINE L1 -4086 2310 1972 21 36 0 0 chr9 95581357 95581385 -46690059 + AT_rich Low_complexity Low_complexity 1 28 0 246 299 16 76 chr9 95582932 95583116 -46688328 + L2 LINE L2 2920 3092 -180 272 296 0 9 chr9 95583247 95583355 -46688089 + GA-rich Low_complexity Low_complexity 1 107 0 262 271 31 0 chr9 95583418 95583514 -46687930 + GA-rich Low_complexity Low_complexity 2 100 0 1391 190 21 7 chr9 95583618 95583902 -46687542 + AluJo SINE Alu 17 304 -8 2203 78 7 3 chr9 95583982 95584277 -46687167 - AluSx SINE Alu -16 296 1 893 192 5 50 chr9 95584395 95584593 -46686851 - MER5A DNA MER1_type 0 189 1 467 289 0 8 chr9 95584595 95584716 -46686728 + MIR SINE MIR 11 130 -132 492 207 5 106 chr9 95584722 95584910 -46686534 + MER104 DNA Tc2 10 178 -2 299 198 161 25 chr9 95584915 95584996 -46686448 + MIR SINE MIR 159 250 -12 1780 121 85 0 chr9 95585412 95585684 -46685760 + AluSx SINE Alu 1 295 -17 420 20 0 0 chr9 95585727 95585776 -46685668 + (TG)n Simple_repeat Simple_repeat 1 49 0 2147 96 0 0 chr9 95586289 95586570 -46684874 - AluSg SINE Alu -29 281 1 242 259 43 71 chr9 95586593 95586806 -46684638 - L1ME4a LINE L1 -93 6028 5826 2211 103 3 0 chr9 95586806 95587106 -46684338 - AluSq SINE Alu -12 301 1 242 259 43 71 chr9 95587106 95587136 -46684308 - L1ME4a LINE L1 -295 5826 5797 369 269 101 62 chr9 95587410 95587618 -46683826 - L1ME4a LINE L1 0 6121 5906 476 240 107 46 chr9 95588085 95588281 -46683163 - L3 LINE CR1 -165 1412 1205 182 385 15 0 chr9 95588361 95588426 -46683018 - L3 LINE CR1 -514 1063 998 2141 156 116 10 chr9 95588571 95589083 -46682361 - L1M3 LINE L1 -437 5743 5184 590 0 14 0 chr9 95589123 95589193 -46682251 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 274 189 0 54 chr9 95589193 95589267 -46682177 - L1MA10 LINE L1 -97 6237 6168 * 3984 217 40 18 chr9 95589247 95590701 -46680743 - L1MB7 LINE L1 -287 5897 4408 190 370 0 27 chr9 95591738 95591811 -46679633 - MIR3 SINE MIR 0 208 138 207 0 0 0 chr9 95591869 95591892 -46679552 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2118 118 0 0 chr9 95591902 95592199 -46679245 + AluSx SINE Alu 1 297 -15 2033 123 0 13 chr9 95592299 95592609 -46678835 - AluSx SINE Alu -6 306 1 200 196 268 0 chr9 95592941 95592997 -46678447 + L2 LINE L2 3240 3310 -3 1060 171 68 0 chr9 95593341 95593546 -46677898 + MER20 DNA MER1_type 1 219 0 206 250 0 0 chr9 95593623 95593667 -46677777 + MIR SINE MIR 81 124 -84 197 184 0 26 chr9 95593688 95593726 -46677718 + MIR SINE MIR 81 117 -91 24 53 0 0 chr9 95597505 95597543 -46673901 + AT_rich Low_complexity Low_complexity 1 38 0 301 263 72 53 chr9 95599226 95599378 -46672066 - MIR SINE MIR -65 197 43 255 307 118 31 chr9 95599310 95599437 -46672007 + MIR3 SINE MIR 6 143 -65 * 370 274 96 55 chr9 95599547 95599693 -46671751 + L1MC4 LINE L1 6494 6702 -1140 441 0 0 0 chr9 95599711 95599760 -46671684 + (CA)n Simple_repeat Simple_repeat 2 50 0 214 273 114 53 chr9 95599835 95599967 -46671477 - L2 LINE L2 -212 3060 2921 465 333 48 6 chr9 95600481 95600646 -46670798 - MIR3 SINE MIR -7 201 30 875 170 0 7 chr9 95601085 95601238 -46670206 + FRAM SINE Alu 6 157 -19 248 174 45 8 chr9 95601238 95601370 -46670074 + (TA)n Simple_repeat Simple_repeat 2 138 0 325 245 0 75 chr9 95601377 95601483 -46669961 - L1MC4 LINE L1 -1339 6703 6606 1511 233 115 15 chr9 95601502 95601970 -46669474 - LTR33A LTR ERVL 0 523 9 300 265 37 52 chr9 95602211 95602347 -46669097 + L2 LINE L2 2919 3052 -220 224 286 95 57 chr9 95602395 95602412 -46669032 + L2 LINE L2 3157 3172 -100 2015 145 68 31 chr9 95602412 95602763 -46668681 + THE1B LTR MaLR 1 364 0 224 286 95 57 chr9 95602763 95602850 -46668594 + L2 LINE L2 3172 3265 -7 289 319 82 78 chr9 95602871 95603110 -46668334 - L2 LINE L2 -5 3267 3028 280 233 87 60 chr9 95603110 95603260 -46668184 + MIR3 SINE MIR 4 157 -51 330 194 370 9 chr9 95603266 95603374 -46668070 - MER5B DNA MER1_type 0 178 32 815 150 0 69 chr9 95603401 95603561 -46667883 - L1MB8 LINE L1 -55 6123 5975 715 253 49 63 chr9 95603662 95603947 -46667497 - MER21B LTR ERV1 -577 286 6 2415 68 3 3 chr9 95604177 95604488 -46666956 - AluY SINE Alu 0 311 1 2208 93 0 0 chr9 95604563 95604853 -46666591 + AluSg SINE Alu 1 290 -20 3805 129 0 0 chr9 95605226 95605753 -46665691 - MER1A DNA MER1_type 0 527 1 290 304 38 0 chr9 95606134 95606213 -46665231 - L2 LINE L2 -9 3304 3223 21 0 0 0 chr9 95606330 95606351 -46665093 + AT_rich Low_complexity Low_complexity 1 21 0 245 119 48 0 chr9 95606472 95606514 -46664930 - MER113 DNA MER1_type? -464 57 14 228 67 0 0 chr9 95607229 95607259 -46664185 - LTR50 LTR ERVL 0 795 766 246 196 304 11 chr9 95607351 95607443 -46664001 - MER5A DNA MER1_type 0 189 71 182 36 0 36 chr9 95607445 95607473 -46663971 + (TCTCC)n Simple_repeat Simple_repeat 2 28 0 1870 149 27 7 chr9 95607475 95607770 -46663674 - AluJb SINE Alu -6 306 6 1234 246 253 4 chr9 95607822 95608347 -46663097 - LTR50 LTR ERVL -139 656 1 508 269 17 46 chr9 95608347 95608513 -46662931 - MER117 DNA MER1_type -36 161 1 1996 154 3 0 chr9 95608582 95608881 -46662563 + AluSx SINE Alu 3 302 -10 26 50 0 0 chr9 95608881 95608921 -46662523 + AT_rich Low_complexity Low_complexity 1 40 0 214 145 26 40 chr9 95609271 95609347 -46662097 + GA-rich Low_complexity Low_complexity 2 76 0 291 326 59 5 chr9 95609547 95609734 -46661710 + MER117 DNA MER1_type 1 197 0 2083 121 25 0 chr9 95609857 95610139 -46661305 - AluSx SINE Alu -18 294 6 1854 141 0 34 chr9 95610142 95610440 -46661004 - AluJo SINE Alu -24 288 1 2344 107 0 0 chr9 95612539 95612849 -46658595 + AluSg SINE Alu 1 310 0 406 335 19 0 chr9 95613087 95613242 -46658202 - MIR SINE MIR -73 189 32 187 301 60 12 chr9 95613292 95613375 -46658069 + L3 LINE CR1 65 151 -1426 335 343 57 9 chr9 95613485 95613695 -46657749 + L3 LINE CR1 258 477 -1100 220 213 98 0 chr9 95613730 95613791 -46657653 + MER5A DNA MER1_type 9 75 -114 1885 147 0 7 chr9 95613792 95614071 -46657373 + AluJb SINE Alu 2 278 -34 198 191 0 0 chr9 95614071 95614118 -46657326 + G-rich Low_complexity Low_complexity 3 49 0 771 106 106 24 chr9 95614335 95614458 -46656986 - FLAM_C SINE Alu 0 133 1 7485 96 30 0 chr9 95614596 95616440 -46655004 - L1PA7 LINE L1 -11 6143 4269 193 245 187 65 chr9 95618406 95618545 -46652899 - L2 LINE L2 -99 3173 3018 954 173 40 12 chr9 95618729 95618902 -46652542 + LTR47A LTR ERVL 197 374 -78 183 295 39 0 chr9 95619801 95619879 -46651565 + MIR3 SINE MIR 124 204 -4 2710 23 3 0 chr9 95620422 95620722 -46650722 + AluY SINE Alu 1 301 -10 208 339 46 9 chr9 95621312 95621421 -46650023 + L2 LINE L2 3160 3272 0 187 169 52 13 chr9 95622020 95622097 -46649347 + (CA)n Simple_repeat Simple_repeat 1 80 0 201 257 95 0 chr9 95622334 95622425 -46649019 - MIR SINE MIR -58 150 45 1628 173 4 11 chr9 95623263 95623386 -46648058 + AluJo SINE Alu 3 125 -187 243 0 0 0 chr9 95623386 95623413 -46648031 + (CA)n Simple_repeat Simple_repeat 2 28 0 1628 173 4 11 chr9 95623413 95623561 -46647883 + AluJo SINE Alu 125 272 -40 360 64 0 0 chr9 95623588 95623635 -46647809 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1967 227 39 72 chr9 95624092 95624732 -46646712 - MLT1E2 LTR MaLR -7 619 1 448 86 0 0 chr9 95624765 95624823 -46646621 - MSTA LTR MaLR 0 428 371 2638 140 3 3 chr9 95624828 95625220 -46646224 + MSTB-int LTR MaLR 1260 1651 0 1500 204 65 32 chr9 95625220 95625632 -46645812 + MSTB LTR MaLR 1 426 0 2265 116 0 3 chr9 95625961 95626263 -46645181 + AluSx SINE Alu 1 301 -11 2162 129 7 0 chr9 95627501 95627796 -46643648 + AluSx SINE Alu 1 297 -15 765 233 257 7 chr9 95628084 95628636 -46642808 + LTR50 LTR ERVL 1 523 0 1421 132 151 81 chr9 95629555 95629653 -46641791 + L1MB8 LINE L1 5797 5887 -291 2130 121 35 0 chr9 95629653 95629942 -46641502 + AluSx SINE Alu 1 299 -13 1421 132 151 81 chr9 95629942 95630200 -46641244 + L1MB8 LINE L1 5887 6178 0 15292 153 28 6 chr9 95630606 95633038 -46638406 - L1M1 LINE L1 -5079 2486 1 496 180 27 9 chr9 95633036 95633147 -46638297 - L1M4 LINE L1 -987 5159 5047 * 1168 88 0 0 chr9 95633266 95633414 -46638030 + AluSg/x SINE Alu 161 308 -4 2296 88 20 10 chr9 95633567 95633872 -46637572 - AluSq SINE Alu -5 308 1 445 286 25 37 chr9 95634345 95634506 -46636938 + MIR3 SINE MIR 17 175 -33 1968 91 57 4 chr9 95634840 95635125 -46636319 - AluSq SINE Alu 0 303 5 231 36 0 0 chr9 95635470 95635498 -46635946 + (TA)n Simple_repeat Simple_repeat 2 29 0 2516 61 0 0 chr9 95635498 95635793 -46635651 - AluY SINE Alu -16 295 1 837 161 8 0 chr9 95635827 95635957 -46635487 + AluJo SINE Alu 2 132 -170 439 274 63 23 chr9 95636024 95636240 -46635204 + MIR SINE MIR 10 224 -38 182 105 26 0 chr9 95636741 95636779 -46634665 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr9 95636852 95636880 -46634564 + AT_rich Low_complexity Low_complexity 1 28 0 406 282 42 0 chr9 95637207 95637349 -46634095 - MER103 DNA DNA -7 159 12 22 0 0 0 chr9 95637375 95637397 -46634047 + AT_rich Low_complexity Low_complexity 1 22 0 803 193 0 50 chr9 95637410 95637571 -46633873 + AluJo SINE Alu 141 293 -9 15485 30 0 1 chr9 95638072 95640405 -46631039 - L1PA4 LINE L1 -241 5914 3583 2478 43 7 0 chr9 95640405 95640710 -46630734 + L1P LINE L1 3314 3620 -2526 2139 171 24 0 chr9 95640696 95641111 -46630333 - L1M4c LINE L1 -2558 5007 4583 * 3889 216 20 21 chr9 95641108 95641843 -46629601 - L1 LINE L1 -3532 4033 3298 1705 187 3 21 chr9 95641843 95642127 -46629317 + AluJo SINE Alu 2 280 -32 288 0 0 0 chr9 95642127 95642159 -46629285 + (GA)n Simple_repeat Simple_repeat 1 32 0 3889 216 20 21 chr9 95642159 95642800 -46628644 - L1 LINE L1 -4265 3300 2663 1630 202 4 7 chr9 95642800 95643077 -46628367 - AluJb SINE Alu -36 276 1 5572 168 15 9 chr9 95643077 95644027 -46627417 - L1 LINE L1 -4370 2195 1241 364 289 77 54 chr9 95644060 95644396 -46627048 - L1M4c LINE L1 -4322 3424 3081 3862 239 62 23 chr9 95644411 95645054 -46626390 - L1M4c LINE L1 -4330 3235 2619 2137 101 7 39 chr9 95645054 95645361 -46626083 - AluSx SINE Alu -15 297 1 3862 239 62 23 chr9 95645361 95646387 -46625057 - L1M4c LINE L1 -4946 2619 1461 564 168 134 0 chr9 95646401 95646520 -46624924 - L1M4c LINE L1 -6052 1415 1281 2062 235 50 59 chr9 95646526 95647046 -46624398 - L1M4c LINE L1 -6269 1198 682 991 182 18 0 chr9 95647046 95647216 -46624228 - FAM SINE Alu -1 174 2 2062 235 50 59 chr9 95647216 95647274 -46624170 - L1M4c LINE L1 -6785 682 625 571 232 94 0 chr9 95647278 95647416 -46624028 - L1ME LINE L1 -568 5667 5517 3920 82 16 2 chr9 95647431 95647980 -46623464 + L1M1 LINE L1 5254 5810 -495 2290 114 0 0 chr9 95648031 95648338 -46623106 - AluSc SINE Alu -2 307 1 607 206 13 19 chr9 95648339 95648494 -46622950 - L1ME LINE L1 -730 5509 5356 1774 230 45 13 chr9 95648500 95649030 -46622414 - L1ME LINE L1 -912 5303 4757 * 3973 237 43 14 chr9 95649008 95650011 -46621433 - L1ME LINE L1 -5345 1051 20 438 273 61 61 chr9 95650307 95650670 -46620774 - L1ME LINE L1 -5182 1023 661 685 294 69 40 chr9 95650807 95651228 -46620216 - L1ME LINE L1 -5915 481 49 21 0 0 0 chr9 95651262 95651283 -46620161 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 95651292 95651313 -46620131 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr9 95651406 95651429 -46620015 + (TCTCCC)n Simple_repeat Simple_repeat 3 25 0 500 284 38 14 chr9 95651461 95651672 -46619772 + MIR SINE MIR 47 262 0 294 227 40 0 chr9 95652651 95652726 -46618718 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 547 214 282 43 chr9 95653424 95653793 -46617651 - L2 LINE L2 -20 3293 2837 198 0 0 0 chr9 95655123 95655145 -46616299 + (A)n Simple_repeat Simple_repeat 1 22 0 260 27 27 0 chr9 95657572 95657609 -46613835 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 837 191 0 0 chr9 95657613 95657749 -46613695 - FRAM SINE Alu -44 132 1 187 310 59 122 chr9 95657749 95658020 -46613424 - L2 LINE L2 -15 3257 3004 641 120 20 0 chr9 95658024 95658124 -46613320 + MLT1A2 LTR MaLR 1 102 -272 851 112 0 22 chr9 95658230 95658364 -46613080 - LTR43 LTR ERV1 -110 492 362 3507 132 71 53 chr9 95658364 95659084 -46612360 + pTR5 LTR ERV1 743 1475 -963 1145 86 0 7 chr9 95659084 95659236 -46612208 - AluSq SINE Alu -95 218 68 2132 149 26 0 chr9 95659239 95659582 -46611862 - THE1B LTR MaLR -12 352 1 3509 96 167 133 chr9 95659966 95660850 -46610594 + pTR5 LTR ERV1 1525 2438 0 2248 134 22 6 chr9 95660854 95661212 -46610232 - LTR43 LTR ERV1 -238 364 1 632 236 24 42 chr9 95661212 95661378 -46610066 + L1MB4 LINE L1 4028 4191 -1955 1589 176 11 4 chr9 95661378 95661657 -46609787 + AluJb SINE Alu 1 281 -31 632 236 24 42 chr9 95661657 95661702 -46609742 + L1MB4 LINE L1 4191 4235 -1911 227 141 24 24 chr9 95661703 95661788 -46609656 + (TA)n Simple_repeat Simple_repeat 2 86 0 4670 201 15 11 chr9 95661825 95662498 -46608946 + L1MB4 LINE L1 4158 4827 -1353 2400 76 0 0 chr9 95662498 95662802 -46608642 + AluY SINE Alu 1 304 -7 4670 201 15 11 chr9 95662802 95664129 -46607315 + L1MB4 LINE L1 4827 6163 -17 207 139 0 0 chr9 95664226 95664262 -46607182 + (TA)n Simple_repeat Simple_repeat 2 37 0 400 143 0 0 chr9 95664289 95664359 -46607085 + L1MB8 LINE L1 6106 6175 -3 1463 132 62 0 chr9 95664402 95664644 -46606800 - Tigger2 DNA MER2_type -1 2717 2461 4304 149 9 7 chr9 95664710 95665450 -46605994 - Tigger2 DNA MER2_type -1974 744 3 399 297 247 1 chr9 95665505 95665920 -46605524 - L2 LINE L2 -248 3065 2553 6917 158 90 63 chr9 95665940 95666342 -46605102 + L1MC3 LINE L1 5908 6298 -1487 2139 107 34 0 chr9 95666342 95666640 -46604804 + AluSc SINE Alu 1 308 -1 6917 158 90 63 chr9 95666640 95667170 -46604274 + L1MC3 LINE L1 6298 6812 -973 237 65 0 0 chr9 95667170 95667201 -46604243 + (CA)n Simple_repeat Simple_repeat 2 32 0 6917 158 90 63 chr9 95667201 95667406 -46604038 + L1MC3 LINE L1 6812 7010 -775 257 273 11 11 chr9 95667406 95667494 -46603950 + MLT1I LTR MaLR 24 111 -456 6917 158 90 63 chr9 95667494 95667829 -46603615 + L1MC3 LINE L1 7010 7519 -266 2193 149 105 8 chr9 95667829 95668219 -46603225 + MSTA LTR MaLR 1 428 0 6917 158 90 63 chr9 95668219 95668326 -46603118 + L1MC3 LINE L1 7519 7622 -163 2329 71 3 0 chr9 95668336 95668630 -46602814 + AluSc SINE Alu 1 295 -14 1767 178 37 24 chr9 95668638 95669021 -46602423 + L1MB4 LINE L1 5449 5836 -344 707 290 147 52 chr9 95669195 95669602 -46601842 + MLT1J1 LTR MaLR 1 446 0 347 306 27 0 chr9 95669610 95669721 -46601723 - MIR SINE MIR -105 157 44 2081 198 75 10 chr9 95669792 95670286 -46601158 - MER74A LTR ERVL -28 530 5 187 347 23 40 chr9 95670434 95670607 -46600837 - L2 LINE L2 -476 2838 2669 1060 293 78 37 chr9 95670620 95671108 -46600336 - MLT1H LTR MaLR -1 548 41 1724 203 17 17 chr9 95671109 95671227 -46600217 + MLT1A2 LTR MaLR 1 118 -508 2223 180 58 22 chr9 95671227 95671672 -46599772 + LOR1b LTR ERV1 1 461 0 1724 203 17 17 chr9 95671672 95671921 -46599523 + MLT1A2 LTR MaLR 118 617 -9 964 217 16 0 chr9 95671976 95672165 -46599279 + MER58A DNA MER1_type 30 221 -3 274 334 73 18 chr9 95672281 95672492 -46598952 + MIR SINE MIR 28 248 -14 180 274 20 0 chr9 95673867 95673918 -46597526 - MIR3 SINE MIR -43 165 114 194 233 62 14 chr9 95674124 95674197 -46597247 + MIR SINE MIR 71 137 -71 320 257 150 61 chr9 95676011 95676291 -46595153 + MLT1I LTR MaLR 74 378 -31 524 216 134 8 chr9 95676878 95677012 -46594432 - MLT1B LTR MaLR -239 151 1 255 205 51 0 chr9 95677012 95677090 -46594354 + GA-rich Low_complexity Low_complexity 5 86 0 241 333 10 0 chr9 95678161 95678257 -46593187 + MIR SINE MIR 47 143 -119 416 236 174 14 chr9 95679381 95679525 -46591919 - MLT1H LTR MaLR -1 548 382 2241 207 70 33 chr9 95679548 95680148 -46591296 - MLT1E3 LTR MaLR 0 624 3 215 171 0 0 chr9 95681710 95681745 -46589699 + MIR SINE MIR 116 150 -112 216 241 0 19 chr9 95681827 95681881 -46589563 + MIR SINE MIR 47 99 -163 245 224 31 92 chr9 95684136 95684234 -46587210 + MIR SINE MIR 49 140 -68 261 303 181 4 chr9 95684553 95684751 -46586693 - MIR SINE MIR -11 251 18 201 244 200 22 chr9 95685090 95685180 -46586264 - MIR3 SINE MIR -11 197 92 227 253 23 46 chr9 95685229 95685316 -46586128 + L1MC/D LINE L1 5689 5773 -2035 231 294 14 35 chr9 95685442 95685585 -46585859 + L1MC5 LINE L1 7560 7699 -262 1495 206 103 26 chr9 95686018 95686357 -46585087 + MLT1A1 LTR MaLR 1 365 0 632 119 0 0 chr9 95686561 95686645 -46584799 - FLAM_C SINE Alu -25 118 35 699 302 28 7 chr9 95686880 95687105 -46584339 + MIR SINE MIR 31 262 0 181 326 31 0 chr9 95688051 95688149 -46583295 + MIR SINE MIR 23 123 -139 326 295 9 19 chr9 95689509 95689614 -46581830 - MIR SINE MIR -79 183 80 2202 189 37 22 chr9 95691568 95691744 -46579700 + MLT1C LTR MaLR 4 176 -291 2404 73 0 16 chr9 95691744 95691880 -46579564 + AluY SINE Alu 1 138 -173 192 40 0 0 chr9 95691880 95691905 -46579539 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2404 73 0 16 chr9 95691905 95692084 -46579360 + AluY SINE Alu 138 311 0 2202 189 37 22 chr9 95692084 95692363 -46579081 + MLT1C LTR MaLR 176 466 -1 307 309 101 5 chr9 95692430 95692618 -46578826 + MIR SINE MIR 46 251 -11 198 296 127 0 chr9 95692813 95692884 -46578560 - MIR3 SINE MIR -52 156 77 362 297 89 68 chr9 95694007 95694243 -46577201 + L3 LINE CR1 879 1119 -458 531 56 0 0 chr9 95694876 95694947 -46576497 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 238 288 0 65 chr9 95695063 95695216 -46576228 + (CACCC)n Simple_repeat Simple_repeat 3 145 0 192 247 233 0 chr9 95695306 95695379 -46576065 + MIR SINE MIR 56 145 -117 262 161 18 36 chr9 95695927 95695983 -46575461 + MLT1K LTR MaLR 449 503 -85 394 231 6 6 chr9 95696207 95696367 -46575077 + (TG)n Simple_repeat Simple_repeat 2 161 0 449 236 16 24 chr9 95697441 95697564 -46573880 + MIR SINE MIR 81 202 -60 2411 76 3 0 chr9 95698070 95698374 -46573070 - AluSp SINE Alu -8 305 1 643 289 76 0 chr9 95698547 95698744 -46572700 + MER20 DNA MER1_type 1 212 -7 195 286 0 0 chr9 95699412 95699517 -46571927 + CT-rich Low_complexity Low_complexity 1 105 0 695 282 89 0 chr9 95701074 95701287 -46570157 + MER63 DNA MER1_type 427 658 -402 244 267 116 12 chr9 95701413 95701499 -46569945 + MER58C DNA MER1_type 120 214 -1 654 274 192 33 chr9 95701501 95701808 -46569636 + MER63 DNA MER1_type 650 1005 -56 1957 135 7 0 chr9 95702247 95702544 -46568900 + AluSg SINE Alu 5 303 -7 451 280 8 17 chr9 95702963 95703081 -46568363 + MLT1K LTR MaLR 470 586 -2 242 333 25 25 chr9 95703626 95703788 -46567656 + L2 LINE L2 2899 3060 -212 447 305 22 109 chr9 95704659 95704945 -46566499 - L2 LINE L2 -21 3251 3002 1963 155 0 0 chr9 95704945 95705242 -46566202 + AluJb SINE Alu 2 298 -14 447 305 22 109 chr9 95705242 95705322 -46566122 - L2 LINE L2 -270 3002 2917 195 42 0 0 chr9 95705408 95705432 -46566012 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4645 42 2 2 chr9 95705432 95705983 -46565461 - L1PA8 LINE L1 -11 6161 5611 426 338 79 0 chr9 95706167 95706383 -46565061 - L2 LINE L2 -886 2428 2196 597 301 31 22 chr9 95706536 95706762 -46564682 - MIR SINE MIR -33 229 2 307 331 127 30 chr9 95706765 95706813 -46564631 - L2 LINE L2 -1369 1945 1903 2206 157 26 23 chr9 95706813 95707202 -46564242 - MLT1B LTR MaLR 0 390 1 307 331 127 30 chr9 95707202 95707319 -46564125 - L2 LINE L2 -1411 1903 1764 230 250 125 0 chr9 95707324 95707412 -46564032 - MLT1G1 LTR MaLR 0 595 497 * 427 284 24 40 chr9 95707409 95707605 -46563839 - MLT1G1 LTR MaLR -185 357 211 1240 406 21 23 chr9 95708127 95708311 -46563133 + MLT1B LTR MaLR 1 184 -206 2122 111 7 7 chr9 95708311 95708617 -46562827 + AluSq SINE Alu 2 307 -6 1240 406 21 23 chr9 95708617 95708819 -46562625 + MLT1B LTR MaLR 184 386 -4 2053 113 0 0 chr9 95708958 95709364 -46562080 + AluSx SINE Alu 1 406 0 1183 173 186 0 chr9 95709376 95709613 -46561831 + AluJo SINE Alu 16 296 -16 458 220 70 42 chr9 95709720 95709958 -46561486 - MLT1H LTR MaLR -244 305 1 334 310 97 0 chr9 95710206 95710319 -46561125 + MIR SINE MIR 35 158 -104 208 413 40 8 chr9 95710795 95710921 -46560523 + L2 LINE L2 3134 3263 -9 2341 155 16 5 chr9 95711183 95711569 -46559875 - MLT1B LTR MaLR 0 390 1 195 349 24 12 chr9 95711729 95711812 -46559632 + MIR3 SINE MIR 100 183 -25 207 293 0 27 chr9 95712139 95712214 -46559230 + GA-rich Low_complexity Low_complexity 4 76 0 250 217 48 60 chr9 95712917 95713000 -46558444 - L2 LINE L2 0 3272 3191 360 340 32 32 chr9 95713196 95713352 -46558092 - MER91A DNA MER1_type -40 156 1 520 227 32 42 chr9 95713973 95714176 -46557268 - MER113 DNA MER1_type? -185 336 134 4242 183 13 9 chr9 95714176 95714940 -46556504 + L1MC1 LINE L1 5567 6333 0 520 227 32 42 chr9 95714940 95714952 -46556492 - MER113 DNA MER1_type? -387 134 123 1122 144 0 6 chr9 95715058 95715396 -46556048 + (CAGT)n Simple_repeat Simple_repeat 2 337 0 336 320 24 8 chr9 95715397 95715522 -46555922 - L2 LINE L2 -188 3084 2958 977 270 66 29 chr9 95715955 95716056 -46555388 + L1ME LINE L1 5229 5325 -845 1734 172 3 20 chr9 95716056 95716353 -46555091 - AluJb SINE Alu -19 293 2 977 270 66 29 chr9 95716353 95716675 -46554769 + L1ME LINE L1 5325 5683 -487 733 310 77 31 chr9 95716701 95717179 -46554265 - L2 LINE L2 -2 3311 2812 1019 83 8 0 chr9 95717194 95717327 -46554117 + AluSc SINE Alu 1 134 -175 1287 97 27 0 chr9 95717429 95717614 -46553830 + AluSc SINE Alu 120 309 0 202 270 27 40 chr9 95717735 95717809 -46553635 + L2 LINE L2 3160 3232 -40 263 211 0 0 chr9 95718292 95718344 -46553100 + LTR30 LTR ERV1 1 52 -670 2073 133 11 96 chr9 95718344 95718812 -46552632 + LTR12 LTR ERV1 53 480 -234 286 267 183 5 chr9 95719560 95719751 -46551693 + L2 LINE L2 2494 2718 -596 356 265 61 7 chr9 95719898 95720045 -46551399 + L2 LINE L2 3094 3248 -65 1102 149 36 5 chr9 95720201 95720395 -46551049 - L1MB3 LINE L1 -2 6181 5982 1436 178 103 9 chr9 95720397 95720798 -46550646 - MER70B LTR ERVL -5 467 18 1797 133 3 0 chr9 95720802 95721104 -46550340 - L1MB3 LINE L1 -199 5984 5682 207 204 0 0 chr9 95721134 95721183 -46550261 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 219 69 0 0 chr9 95721270 95721299 -46550145 + (TCC)n Simple_repeat Simple_repeat 1 29 0 217 135 0 77 chr9 95721549 95721601 -46549843 + (TCC)n Simple_repeat Simple_repeat 1 48 0 379 291 57 0 chr9 95721896 95722037 -46549407 - LTR16C LTR ERVL -127 364 216 237 65 0 0 chr9 95722289 95722320 -46549124 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 379 250 102 31 chr9 95722648 95722776 -46548668 - L2 LINE L2 0 3272 3136 461 254 15 37 chr9 95723095 95723229 -46548215 - MIR SINE MIR -69 193 63 236 225 221 46 chr9 95723415 95723535 -46547909 + MIR SINE MIR 49 187 -67 306 287 77 61 chr9 95724024 95724271 -46547173 - L2 LINE L2 -176 3137 2887 229 306 5 36 chr9 95724400 95724545 -46546899 + CT-rich Low_complexity Low_complexity 1 209 0 399 330 100 14 chr9 95724971 95725320 -46546124 + L2 LINE L2 2813 3191 -122 294 307 92 28 chr9 95725458 95725605 -46545839 + MIR SINE MIR 12 175 -61 199 226 177 0 chr9 95725645 95725707 -46545737 + L2 LINE L2 3240 3312 -1 666 219 7 84 chr9 95725730 95726004 -46545440 - HsTC2 DNA Tc2 -2 1896 1644 224 299 0 0 chr9 95729179 95729246 -46542198 + C-rich Low_complexity Low_complexity 1 67 0 231 36 0 0 chr9 95729418 95729446 -46541998 + (TTG)n Simple_repeat Simple_repeat 3 30 0 222 37 0 0 chr9 95730333 95730360 -46541084 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chr9 95733749 95733787 -46537657 + GC_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr9 95733879 95733907 -46537537 + GC_rich Low_complexity Low_complexity 1 28 0 284 274 36 0 chr9 95734892 95734976 -46536468 - MIR3 SINE MIR -45 163 77 192 152 0 0 chr9 95736837 95736870 -46534574 + T-rich Low_complexity Low_complexity 1 33 0 883 197 11 0 chr9 95737436 95737624 -46533820 + AluJo SINE Alu 123 312 0 199 183 0 33 chr9 95738320 95738380 -46533064 + CT-rich Low_complexity Low_complexity 3 60 0 262 311 119 40 chr9 95739345 95739522 -46531922 + MIR3 SINE MIR 4 194 -14 931 238 14 5 chr9 95739525 95739748 -46531696 - MER58B DNA MER1_type 0 341 117 193 267 20 99 chr9 95740073 95740174 -46531270 - L3 LINE CR1 -73 1504 1412 2166 144 55 27 chr9 95740591 95740949 -46530495 + L1MA9 LINE L1 5894 6266 -46 1732 136 9 85 chr9 95740949 95741280 -46530164 - AluJb SINE Alu -6 306 1 2166 144 55 27 chr9 95741280 95741323 -46530121 + L1MA9 LINE L1 6266 6306 -6 23 33 0 0 chr9 95741327 95741357 -46530087 + AT_rich Low_complexity Low_complexity 1 30 0 224 358 68 34 chr9 95741359 95741535 -46529909 - L2 LINE L2 -16 3256 3075 374 288 162 16 chr9 95741862 95742053 -46529391 - MIR SINE MIR -14 248 30 328 266 239 0 chr9 95742458 95742571 -46528873 - MER91C DNA MER1_type 0 140 1 913 224 180 42 chr9 95742803 95743003 -46528441 + MLT1E1 LTR MaLR 48 219 -435 2173 112 0 0 chr9 95743003 95743299 -46528145 + AluSx SINE Alu 1 296 -16 913 224 180 42 chr9 95743299 95743526 -46527918 + MLT1E1 LTR MaLR 219 534 -120 2186 95 3 0 chr9 95743933 95744218 -46527226 + AluSq SINE Alu 13 298 -15 2249 105 0 3 chr9 95745098 95745440 -46526004 - AluSq SINE Alu 0 313 1 2203 12 0 0 chr9 95745463 95745708 -46525736 - AluY SINE Alu -8 303 59 316 326 0 0 chr9 95745877 95745983 -46525461 + MIR SINE MIR 99 203 -59 305 87 43 54 chr9 95746806 95746898 -46524546 + (TTAA)n Simple_repeat Simple_repeat 2 92 0 258 56 0 0 chr9 95746899 95746935 -46524509 + MLT2A2 LTR ERVL 418 453 0 15643 68 6 6 chr9 95746935 95747050 -46524394 + HERVL-A2 LTR ERVL 1 115 -5539 2218 113 3 0 chr9 95747050 95747360 -46524084 - AluY SINE Alu 0 311 1 15643 68 6 6 chr9 95747360 95748335 -46523109 + HERVL-A2 LTR ERVL 115 1089 -4565 2637 116 0 0 chr9 95748335 95748690 -46522754 - THE1A LTR MaLR 0 355 1 12318 82 8 8 chr9 95748691 95750270 -46521174 - THE1A-int LTR MaLR -1 1579 1 2803 82 0 0 chr9 95750270 95750625 -46520819 - THE1A LTR MaLR 0 355 1 15643 68 6 6 chr9 95750625 95751710 -46519734 + HERVL-A2 LTR ERVL 1087 2180 -3474 331 157 57 0 chr9 95751711 95751781 -46519663 + L1MD2 LINE L1 6068 6141 -218 319 211 78 0 chr9 95751862 95751952 -46519492 + L1MD3 LINE L1 7897 7993 -2 576 252 112 69 chr9 95751976 95752090 -46519354 + MER97c DNA MER1_type? 607 715 -375 2193 121 0 3 chr9 95752090 95752403 -46519041 - AluSx SINE Alu 0 312 1 576 252 112 69 chr9 95752403 95752752 -46518692 + MER97c DNA MER1_type? 715 1090 0 334 353 34 0 chr9 95753299 95753418 -46518026 + MIR3 SINE MIR 69 191 -17 365 313 13 27 chr9 95753714 95753864 -46517580 - MLT1J2 LTR MaLR -59 391 244 2071 179 23 23 chr9 95753885 95754275 -46517169 + MLT1B LTR MaLR 1 390 0 300 372 85 6 chr9 95754621 95754785 -46516659 + L1MC4 LINE L1 7500 7676 -366 275 234 96 0 chr9 95754823 95754917 -46516527 + LTR33 LTR ERVL 5 107 -414 330 298 16 8 chr9 95754996 95755117 -46516327 + MLT1I LTR MaLR 63 184 -225 363 285 127 16 chr9 95755640 95755822 -46515622 + L1MC4 LINE L1 7831 8041 -1 264 260 10 31 chr9 95755885 95755981 -46515463 + L2 LINE L2 2916 3009 -263 212 333 9 48 chr9 95756518 95756623 -46514821 - MER5A DNA MER1_type -72 117 17 235 338 184 27 chr9 95757197 95757534 -46513910 + L2 LINE L2 2832 3221 -92 1725 238 62 25 chr9 95757647 95758096 -46513348 + MLT1C LTR MaLR 1 466 -1 452 279 0 51 chr9 95758131 95758289 -46513155 + MIR SINE MIR 40 189 -73 9119 173 16 13 chr9 95758592 95758825 -46512619 + L1PA16 LINE L1 3385 3616 -2550 2754 129 46 7 chr9 95758825 95759237 -46512207 + MSTA LTR MaLR 1 428 0 9119 173 16 13 chr9 95759237 95760031 -46511413 + L1PA16 LINE L1 3616 4405 -1761 2926 90 0 0 chr9 95760031 95760386 -46511058 + THE1A LTR MaLR 1 355 0 9119 173 16 13 chr9 95760386 95762127 -46509317 + L1PA16 LINE L1 4405 6157 -9 291 235 118 29 chr9 95762173 95762309 -46509135 + L1ME2 LINE L1 338 485 -5911 415 305 67 19 chr9 95762668 95762937 -46508507 + L1ME2 LINE L1 949 1230 -5179 2150 196 24 10 chr9 95763093 95763588 -46507856 + L1M2 LINE L1 1646 2147 -4702 3044 130 31 68 chr9 95763588 95764164 -46507280 + LTR10A LTR ERV1 1 555 -54 4769 176 32 24 chr9 95764176 95765163 -46506281 + L1M2 LINE L1 2144 3153 -3695 2024 125 28 3 chr9 95765163 95765451 -46505993 + AluSx SINE Alu 1 295 -17 4769 176 32 24 chr9 95765451 95766354 -46505090 + L1M2 LINE L1 3153 4047 -2801 1269 176 4 9 chr9 95766354 95766581 -46504863 + HUERS-P1 LTR ERV1 6038 6263 0 4060 101 22 24 chr9 95766581 95767167 -46504277 + LTR8 LTR ERV1 1 585 -106 5060 155 14 20 chr9 95767167 95768083 -46503361 + L1M2 LINE L1 4028 4938 -1910 1959 167 68 6 chr9 95768083 95768449 -46502995 - MER39B-int LTR ERV1 -5072 1259 871 2894 146 83 33 chr9 95768509 95769051 -46502393 - MER39B-int LTR ERV1 -5762 569 1 4454 116 16 2 chr9 95769057 95769696 -46501748 - MER39B LTR ERV1 -5 648 1 713 268 77 0 chr9 95769696 95769916 -46501528 + L1ME2 LINE L1 3904 4140 -2266 781 174 47 158 chr9 95769916 95770238 -46501206 + MLT1A2 LTR MaLR 89 374 0 992 224 85 7 chr9 95770238 95770510 -46500934 + L1M2 LINE L1 5236 5528 -1320 894 252 37 65 chr9 95770540 95770666 -46500778 + L1M2 LINE L1 5620 5748 -1100 1008 216 9 56 chr9 95770666 95770898 -46500546 - MER58A DNA MER1_type 0 224 4 894 252 37 65 chr9 95770898 95771093 -46500351 + L1M2 LINE L1 5748 5932 -916 296 35 69 0 chr9 95771096 95771154 -46500290 + (TA)n Simple_repeat Simple_repeat 1 62 0 1577 256 53 29 chr9 95771185 95771843 -46499601 - LTR51 LTR ERV1 -12 888 209 2067 208 55 0 chr9 95771858 95772291 -46499153 + L1ME2 LINE L1 5525 5981 -445 296 175 40 71 chr9 95772292 95772390 -46499054 - LTR50 LTR ERVL 0 795 680 619 247 42 48 chr9 95772805 95773037 -46498407 - LTR41 LTR ERVL -537 258 2 7630 264 57 44 chr9 95773039 95774979 -46496465 - ERVL LTR ERVL -9 5755 3767 2581 166 42 2 chr9 95774979 95775389 -46496055 - MSTB LTR MaLR 0 426 1 7630 264 57 44 chr9 95775389 95776158 -46495286 - ERVL LTR ERVL -1997 3767 3010 2176 169 151 18 chr9 95776172 95776212 -46495232 - MLT2B1 LTR ERVL 0 520 487 191 86 0 29 chr9 95776212 95776247 -46495197 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2176 169 151 18 chr9 95776247 95776657 -46494787 - MLT2B1 LTR ERVL -33 487 10 3091 275 14 14 chr9 95776698 95777502 -46493942 - ERVL LTR ERVL -2793 2971 2168 2905 324 31 40 chr9 95777569 95778932 -46492512 - ERVL LTR ERVL -3595 2169 819 702 353 33 3 chr9 95778904 95779238 -46492206 - ERVL LTR ERVL -5069 695 352 * 611 251 86 11 chr9 95780079 95780254 -46491190 - LTR41 LTR ERVL -585 188 1 1251 213 144 18 chr9 95780260 95780641 -46490803 + L1ME2 LINE L1 5987 6415 -9 593 335 9 18 chr9 95780655 95780873 -46490571 + ERVL LTR ERVL 5166 5381 -383 412 177 142 21 chr9 95781468 95781609 -46489835 + LTR33A LTR ERVL 339 496 -27 287 308 54 8 chr9 95781647 95781777 -46489667 + HAL1 LINE L1 11 146 -2361 1648 194 60 41 chr9 95781884 95782251 -46489193 - MLT1A2 LTR MaLR 0 374 1 573 308 65 35 chr9 95782277 95782705 -46488739 - ERVL LTR ERVL -4467 1297 857 256 253 173 24 chr9 95783024 95783164 -46488280 + MER5A DNA MER1_type 19 172 -6 247 50 50 0 chr9 95783293 95783333 -46488111 - L1MDa LINE L1 -5204 1336 1295 1777 169 42 9 chr9 95783336 95783673 -46487771 - L1MDa LINE L1 -6175 365 18 2227 95 0 0 chr9 95783689 95783972 -46487472 + AluSx SINE Alu 15 297 -15 248 239 45 0 chr9 95784597 95784664 -46486780 + MIR SINE MIR 119 188 -74 5034 199 72 43 chr9 95784795 95786542 -46484902 + L1MDa LINE L1 18 2113 -4427 2142 101 45 0 chr9 95786542 95786830 -46484614 - AluSx SINE Alu -11 301 1 5034 199 72 43 chr9 95786830 95786875 -46484569 + L1MDa LINE L1 2113 2155 -4385 2358 91 0 0 chr9 95786987 95787283 -46484161 + AluSx SINE Alu 1 296 -16 855 203 103 37 chr9 95787532 95787761 -46483683 - MLT1A2 LTR MaLR -5 369 175 2357 90 7 0 chr9 95787761 95788071 -46483373 - AluSx SINE Alu 0 312 1 855 203 103 37 chr9 95788071 95788256 -46483188 - MLT1A2 LTR MaLR -199 175 4 202 296 43 113 chr9 95788777 95788892 -46482552 + MIR3 SINE MIR 4 110 -98 579 311 125 40 chr9 95789083 95789851 -46481593 - L2 LINE L2 -195 3077 2240 236 331 58 16 chr9 95790129 95790250 -46481194 - L3b LINE CR1 -159 1424 1299 302 358 24 0 chr9 95790420 95790543 -46480901 + L2 LINE L2 2778 2903 -411 322 234 0 16 chr9 95790694 95790758 -46480686 + MIR3 SINE MIR 98 160 -48 246 213 66 98 chr9 95790906 95791028 -46480416 - MIR SINE MIR -68 194 77 1707 167 10 10 chr9 95791164 95791457 -46479987 + AluJo SINE Alu 6 298 -14 398 346 58 58 chr9 95791798 95792127 -46479317 + L2 LINE L2 2944 3272 0 186 258 0 81 chr9 95792638 95792700 -46478744 - L2 LINE L2 -23 3249 3193 2198 106 0 0 chr9 95792995 95793288 -46478156 + AluSx SINE Alu 1 293 -19 420 20 0 0 chr9 95793299 95793348 -46478096 + (TAAAA)n Simple_repeat Simple_repeat 5 53 0 298 250 111 28 chr9 95793943 95794051 -46477393 - MIR3 SINE MIR -7 201 85 1580 236 116 2 chr9 95794073 95794513 -46476931 - MLT1E2 LTR MaLR 0 626 137 2480 87 0 0 chr9 95794827 95795136 -46476308 - AluSx SINE Alu -3 309 1 188 291 0 18 chr9 95795891 95795946 -46475498 + L2 LINE L2 3219 3272 0 512 239 51 24 chr9 95796477 95796645 -46474799 + MIR SINE MIR 51 219 -43 213 302 0 0 chr9 95796870 95796923 -46474521 - L2 LINE L2 -16 3297 3245 45478 36 1 1 chr9 95797745 95803899 -46467545 - L1PA3 LINE L1 -3 6152 2 1066 267 79 26 chr9 95804112 95804603 -46466841 + L1ME LINE L1 5307 5823 -298 1275 235 95 33 chr9 95804614 95804950 -46466494 + MLT1E LTR MaLR 206 562 -31 490 294 99 87 chr9 95806093 95806416 -46465028 + L2 LINE L2 2945 3271 -1 2341 97 0 0 chr9 95806429 95806727 -46464717 - AluSx SINE Alu -14 298 1 313 250 161 9 chr9 95807101 95807213 -46464231 + MIR SINE MIR 107 235 -27 306 183 11 129 chr9 95807492 95807585 -46463859 + MLT1J LTR MaLR 257 338 -173 325 218 40 186 chr9 95808142 95808390 -46463054 - L1M2 LINE L1 -5757 1092 881 595 247 63 6 chr9 95808780 95808938 -46462506 - Charlie8 DNA MER1_type -2249 168 2 252 267 17 17 chr9 95808940 95809000 -46462444 + MIR SINE MIR 55 114 -94 815 190 95 27 chr9 95809003 95809224 -46462220 + MER106A DNA MER1_type 1 236 0 192 77 0 0 chr9 95809378 95809404 -46462040 + (CATA)n Simple_repeat Simple_repeat 3 28 0 258 298 26 53 chr9 95809449 95809563 -46461881 - MIR SINE MIR -123 139 29 460 317 32 16 chr9 95809594 95809780 -46461664 - MER5A DNA MER1_type 0 189 1 211 383 40 13 chr9 95809837 95809986 -46461458 - L3 LINE CR1 -50 1527 1375 612 200 54 8 chr9 95810088 95810218 -46461226 - FLAM_C SINE Alu -7 136 1 1914 156 3 10 chr9 95810250 95810564 -46460880 - AluJb SINE Alu 0 312 1 421 243 84 89 chr9 95810875 95811089 -46460355 + MIR SINE MIR 47 259 -3 393 310 123 0 chr9 95811326 95811513 -46459931 - L2 LINE L2 0 3313 3104 2255 135 0 0 chr9 95811653 95811964 -46459480 + AluSx SINE Alu 1 311 -1 775 146 88 0 chr9 95812224 95812395 -46459049 - L1MA7 LINE L1 0 6291 6106 4557 149 14 41 chr9 95812599 95813922 -46457522 - L1MA7 LINE L1 -170 6121 4826 224 152 87 0 chr9 95814363 95814409 -46457035 - L2 LINE L2 -3 3310 3261 * 247 180 80 0 chr9 95814380 95814430 -46457014 - MIR SINE MIR -18 244 191 265 262 139 23 chr9 95814791 95814963 -46456481 - L1ME4a LINE L1 -74 6047 5856 678 161 41 2 chr9 95816913 95817163 -46454281 + AluJ SINE Alu 1 308 -4 1227 195 210 14 chr9 95817315 95817730 -46453714 - LTR54B LTR ERV1 -2 496 1 3038 187 41 18 chr9 95819012 95819743 -46451701 - L1MC3 LINE L1 -808 6977 6230 4835 131 24 6 chr9 95819760 95820590 -46450854 - Tigger1 DNA MER2_type 0 2418 1574 721 198 109 25 chr9 95820599 95820801 -46450643 - L1MC3 LINE L1 -2250 5535 5317 33 56 0 0 chr9 95820808 95820862 -46450582 + AT_rich Low_complexity Low_complexity 1 54 0 1295 127 0 5 chr9 95820948 95821137 -46450307 + AluJ SINE Alu 108 295 -17 2135 211 35 2 chr9 95821147 95821712 -46449732 - L1MC3 LINE L1 -1068 5078 4495 1777 92 103 0 chr9 95821713 95821975 -46449469 - L1PA11 LINE L1 -17 6157 5869 672 258 40 65 chr9 95821975 95822250 -46449194 - L1MC3 LINE L1 -1838 4308 4041 14819 31 1 0 chr9 95822250 95824778 -46446666 - L1PA4 LINE L1 -4 6151 3623 5312 35 0 0 chr9 95824778 95825470 -46445974 + L1PA4 LINE L1 2946 3637 -2509 * 24790 56 2 4 chr9 95825456 95828764 -46442680 - L1PA4 LINE L1 -2843 3303 1 290 261 11 11 chr9 95828763 95828855 -46442589 - L1MC3 LINE L1 -2089 4057 3966 * 1267 248 16 34 chr9 95828837 95829277 -46442167 - L1MC3 LINE L1 -2469 3677 3246 1663 202 83 64 chr9 95829285 95829466 -46441978 - L1MC3 LINE L1 -3018 3128 2952 545 74 63 0 chr9 95829466 95829561 -46441883 - L1MB3 LINE L1 -2 6181 6081 1663 202 83 64 chr9 95829561 95830019 -46441425 - L1MC3 LINE L1 -3194 2952 2477 572 241 24 6 chr9 95830029 95830195 -46441249 - L1M4 LINE L1 -1116 5030 4862 281 253 23 58 chr9 95831270 95831357 -46440087 - MIR SINE MIR -79 183 100 775 195 139 71 chr9 95831412 95831679 -46439765 - L2 LINE L2 -4 3309 3025 405 150 38 0 chr9 95831651 95831731 -46439713 - L2 LINE L2 -568 2746 2664 * 1666 189 80 38 chr9 95832055 95832531 -46438913 + LTR54B LTR ERV1 1 496 -2 678 272 7 7 chr9 95832551 95832698 -46438746 + MIR SINE MIR 5 151 -111 3485 142 55 59 chr9 95832698 95833082 -46438362 + L1MC1 LINE L1 5592 5973 -360 582 58 12 0 chr9 95833082 95833168 -46438276 + L1PA6 LINE L1 6068 6154 0 3485 142 55 59 chr9 95833168 95833528 -46437916 + L1MC1 LINE L1 5973 6333 0 360 203 85 25 chr9 95833530 95833648 -46437796 + MIR SINE MIR 138 262 0 185 308 0 19 chr9 95833835 95833887 -46437557 - MER5A DNA MER1_type -22 167 117 1590 168 0 41 chr9 95834519 95834787 -46436657 - AluJb SINE Alu -55 257 1 382 307 153 20 chr9 95834928 95835130 -46436314 - MIR SINE MIR -4 258 30 743 272 92 33 chr9 95835276 95835644 -46435800 + L1MEc LINE L1 36 425 -5971 2192 101 3 26 chr9 95835820 95836126 -46435318 + AluSx SINE Alu 1 299 -13 1872 131 4 14 chr9 95836135 95836410 -46435034 + AluSx SINE Alu 27 298 -14 401 265 113 22 chr9 95836652 95836837 -46434607 + HAL1b LINE L1 710 911 -437 728 298 134 34 chr9 95837290 95837802 -46433642 + L3 LINE CR1 950 1567 -10 2384 135 56 15 chr9 95837893 95838301 -46433143 - MSTA LTR MaLR 0 428 4 8899 154 40 1 chr9 95838304 95839860 -46431584 - MSTA-int LTR MaLR 0 1651 35 2177 104 164 0 chr9 95839860 95840226 -46431218 - MSTA LTR MaLR -2 426 1 180 283 120 89 chr9 95840466 95840657 -46430787 + MIR3 SINE MIR 6 202 -6 245 237 227 0 chr9 95841698 95841795 -46429649 + MIR SINE MIR 133 251 -11 651 196 63 6 chr9 95841899 95842057 -46429387 - MER33 DNA MER1_type -153 171 5 520 230 76 26 chr9 95843415 95843617 -46427827 - MER20B DNA MER1_type -4 215 2 1489 122 0 0 chr9 95843963 95844168 -46427276 - AluSg/x SINE Alu -14 296 92 433 162 30 10 chr9 95844501 95844600 -46426844 + MER50 LTR ERV1 1 101 -633 2143 122 0 7 chr9 95844601 95844896 -46426548 - AluSx SINE Alu -19 293 1 1309 189 129 78 chr9 95844921 95845284 -46426160 + LTR36 LTR ERV1 41 443 -168 2275 96 0 20 chr9 95845284 95845586 -46425858 - AluSg SINE Alu -14 296 1 1309 189 129 78 chr9 95845586 95845763 -46425681 + LTR36 LTR ERV1 443 609 -2 2423 195 53 73 chr9 95845772 95846155 -46425289 - L1ME1 LINE L1 -166 6069 5680 4087 80 15 2 chr9 95846155 95846702 -46424742 - MER41A LTR ERV1 0 554 1 2423 195 53 73 chr9 95846702 95847457 -46423987 - L1ME1 LINE L1 -555 5680 4956 593 206 7 7 chr9 95847460 95847596 -46423848 + FLAM_C SINE Alu 4 139 -4 1923 193 27 7 chr9 95847598 95848039 -46423405 - L1ME1 LINE L1 -1247 4968 4519 1196 233 49 53 chr9 95848043 95848510 -46422934 + MLT1C LTR MaLR 1 465 -2 884 236 44 10 chr9 95848512 95848809 -46422635 - L1ME1 LINE L1 -1696 4519 4213 4203 129 29 6 chr9 95848809 95849507 -46421937 - MER50 LTR ERV1 -20 714 1 842 269 29 11 chr9 95849509 95849788 -46421656 - L1ME1 LINE L1 -2003 4212 3929 * 1130 239 51 49 chr9 95849785 95850236 -46421208 - L1ME1 LINE L1 -5936 460 9 902 237 144 56 chr9 95850275 95850535 -46420909 - L1MC5 LINE L1 -44 7917 7681 1883 117 26 71 chr9 95850535 95850844 -46420600 + AluSx SINE Alu 1 295 -17 902 237 144 56 chr9 95850844 95851195 -46420249 - L1MC5 LINE L1 -280 7681 7252 2126 105 7 14 chr9 95851226 95851520 -46419924 - AluSq SINE Alu -20 293 2 1264 202 82 38 chr9 95851591 95851958 -46419486 - MLT1B LTR MaLR -2 388 6 3008 206 49 17 chr9 95851975 95852756 -46418688 - L1MC3 LINE L1 0 7785 6980 367 217 14 0 chr9 95852761 95852830 -46418614 - MER58 DNA MER1_type -144 71 2 2123 123 131 11 chr9 95852889 95853271 -46418173 - MSTA LTR MaLR 0 428 1 357 165 0 87 chr9 95853337 95853365 -46418079 - L1 LINE L1 -1512 4634 4605 1920 104 7 19 chr9 95853365 95853635 -46417809 + AluY SINE Alu 43 309 -2 357 165 0 87 chr9 95853635 95853709 -46417735 - L1 LINE L1 -1541 4605 4541 2080 146 108 10 chr9 95853712 95854102 -46417342 - MSTA LTR MaLR 0 428 1 9166 160 18 7 chr9 95854107 95855365 -46416079 - MSTA-int LTR MaLR -5 1646 364 2136 102 42 0 chr9 95855365 95855648 -46415796 + AluSx SINE Alu 1 295 -17 9166 160 18 7 chr9 95855648 95856017 -46415427 - MSTA-int LTR MaLR -1287 364 1 2316 153 46 10 chr9 95856017 95856430 -46415014 - MSTA LTR MaLR 0 428 1 493 291 35 55 chr9 95856434 95856814 -46414630 - HAL1b LINE L1 -893 1157 801 884 188 56 25 chr9 95857598 95857795 -46413649 + Charlie1b DNA MER1_type 41 243 -280 1218 164 0 0 chr9 95857797 95857986 -46413458 - AluSx SINE Alu -121 191 3 5103 173 38 22 chr9 95857995 95858305 -46413139 + L1MB3 LINE L1 4542 4845 -1338 2004 133 0 29 chr9 95858305 95858613 -46412831 - AluSx SINE Alu -13 299 1 5103 173 38 22 chr9 95858613 95858631 -46412813 + L1MB3 LINE L1 4845 4861 -1322 669 217 16 0 chr9 95858631 95858760 -46412684 - FLAM_A SINE Alu -1 132 2 5103 173 38 22 chr9 95858760 95860050 -46411394 + L1MB3 LINE L1 4861 6182 -1 1420 274 107 2 chr9 95860044 95860592 -46410852 + L1ME3A LINE L1 5317 5951 -211 * 2280 131 54 49 chr9 95860678 95860887 -46410557 - MLT1B LTR MaLR 0 390 177 1892 162 7 0 chr9 95860887 95861195 -46410249 - AluJb SINE Alu -2 310 1 2280 131 54 49 chr9 95861195 95861373 -46410071 - MLT1B LTR MaLR -213 177 1 26 30 0 0 chr9 95861410 95861443 -46410001 + AT_rich Low_complexity Low_complexity 1 33 0 1017 158 30 141 chr9 95861649 95862017 -46409427 - MLT1A1 LTR MaLR 0 365 39 4771 205 69 72 chr9 95862017 95862358 -46409086 - MSTD-int LTR MaLR -1 1734 1393 1521 190 3 23 chr9 95862358 95862668 -46408776 - AluJo SINE Alu -8 304 1 4771 205 69 72 chr9 95862668 95863446 -46407998 - MSTD-int LTR MaLR -342 1393 614 2172 119 0 13 chr9 95863446 95863749 -46407695 - AluSx SINE Alu -13 299 1 2213 120 0 0 chr9 95863759 95864058 -46407386 - AluSx SINE Alu -13 299 1 4771 205 69 72 chr9 95864058 95864243 -46407201 - MSTD-int LTR MaLR -1130 605 402 44012 30 21 1 chr9 95864247 95870277 -46401167 + L1HS LINE L1 2 6155 0 2448 176 17 31 chr9 95870311 95870787 -46400657 - MSTD-int LTR MaLR -1263 472 4 1202 203 89 62 chr9 95870790 95871160 -46400284 - MSTD LTR MaLR 0 396 17 368 193 0 36 chr9 95871415 95871498 -46399946 + MER116 DNA Mariner 1 80 0 2078 120 33 0 chr9 95871529 95871828 -46399616 - AluSg SINE Alu -1 309 1 1821 130 3 62 chr9 95873205 95873512 -46397932 + AluJb SINE Alu 1 289 -23 199 268 37 24 chr9 95873618 95873700 -46397744 - L3 LINE CR1 -199 1378 1296 26 0 0 0 chr9 95875688 95875714 -46395730 + AT_rich Low_complexity Low_complexity 1 26 0 396 250 47 54 chr9 95876361 95876509 -46394935 + MIR SINE MIR 26 172 -90 1940 147 0 0 chr9 95876559 95876876 -46394568 + AluJb SINE Alu 1 317 0 1625 249 127 13 chr9 95877139 95877605 -46393839 - LTR40a LTR ERVL 0 519 1 2339 77 0 17 chr9 95877828 95878126 -46393318 - AluY SINE Alu -18 293 1 2257 101 3 3 chr9 95878128 95878425 -46393019 - AluSc SINE Alu -12 297 1 230 229 219 29 chr9 95880309 95880414 -46391030 + MIR SINE MIR 20 144 -118 286 276 13 0 chr9 95880625 95880777 -46390667 + (TG)n Simple_repeat Simple_repeat 2 155 0 2367 91 7 0 chr9 95880891 95881199 -46390245 + AluSp SINE Alu 1 310 -3 220 214 60 8 chr9 95881364 95881481 -46389963 + (TA)n Simple_repeat Simple_repeat 2 124 0 206 54 0 54 chr9 95882213 95882250 -46389194 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 198 296 95 37 chr9 95882301 95882490 -46388954 + MIR SINE MIR 20 219 -43 381 300 132 18 chr9 95883039 95883266 -46388178 - MIR SINE MIR -5 257 5 251 239 0 80 chr9 95883531 95883619 -46387825 + MIR SINE MIR 58 138 -124 201 244 22 0 chr9 95884041 95884086 -46387358 + L2 LINE L2 3267 3312 -1 22 35 0 0 chr9 95887292 95887321 -46384123 + AT_rich Low_complexity Low_complexity 1 29 0 322 282 126 10 chr9 95887848 95887951 -46383493 + MIR SINE MIR 20 134 -128 1100 165 46 27 chr9 95888042 95888302 -46383142 - L1MA6 LINE L1 0 6300 6036 43356 35 23 1 chr9 95888750 95894634 -46376810 + L1PA3 LINE L1 2 6014 -141 2297 103 3 0 chr9 95894761 95895072 -46376372 + AluSx SINE Alu 1 312 0 1072 165 94 129 chr9 95895072 95895287 -46376157 - L1MC5 LINE L1 -274 7687 7466 1906 135 0 0 chr9 95895287 95895554 -46375890 - AluSx SINE Alu -45 267 1 1072 165 94 129 chr9 95895554 95895817 -46375627 - L1MC5 LINE L1 -495 7466 7226 429 200 29 29 chr9 95895820 95895925 -46375519 - L1MC4 LINE L1 0 8436 8332 * 6185 218 122 56 chr9 95895906 95896891 -46374553 - L1MC4 LINE L1 -309 8127 7209 1026 167 139 32 chr9 95896891 95897107 -46374337 + MER8 DNA MER2_type 1 239 0 6185 218 122 56 chr9 95897107 95897170 -46374274 - L1MC4 LINE L1 -1227 7209 7152 2166 108 24 0 chr9 95897170 95897465 -46373979 - AluSx SINE Alu -10 302 1 2577 46 3 0 chr9 95897470 95897773 -46373671 - AluY SINE Alu -7 304 1 6185 218 122 56 chr9 95897773 95899228 -46372216 - L1MC4 LINE L1 -1287 7149 5456 6225 231 43 51 chr9 95899229 95899655 -46371789 - L1MC4 LINE L1 -1306 5234 4806 2202 106 10 3 chr9 95899655 95899956 -46371488 - AluSq SINE Alu -10 303 1 6225 231 43 51 chr9 95899956 95901620 -46369824 - L1MC4 LINE L1 -1734 4806 3161 688 210 0 0 chr9 95901653 95901791 -46369653 - L1MC4 LINE L1 -5339 1204 1067 227 200 109 0 chr9 95902232 95902287 -46369157 - L1MC4 LINE L1 -5668 872 812 304 319 116 35 chr9 95902692 95902924 -46368520 - L1MC4 LINE L1 -5819 721 471 794 273 147 18 chr9 95903080 95903414 -46368030 - L1MC4 LINE L1 -6150 390 14 3930 162 35 68 chr9 95903478 95903644 -46367800 - L1MB8 LINE L1 -8 6170 6000 183 42 0 0 chr9 95903644 95903668 -46367776 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1954 122 3 18 chr9 95903668 95903954 -46367490 - AluSq SINE Alu -31 282 1 3930 162 35 68 chr9 95903954 95904673 -46366771 - L1MB8 LINE L1 -176 6002 5313 742 172 89 0 chr9 95904663 95904820 -46366624 - L1MB7 LINE L1 0 6184 6014 * 4255 181 63 4 chr9 95904869 95905635 -46365809 - MER21B LTR ERV1 -52 811 1 525 167 13 27 chr9 95905636 95905776 -46365668 - L1MB7 LINE L1 -163 6015 5876 * 5147 215 47 22 chr9 95905766 95907565 -46363879 - L1M4c LINE L1 -4592 2367 506 1234 256 45 17 chr9 95907895 95908250 -46363194 + L1MC4 LINE L1 6459 6823 -1219 * 1342 209 147 16 chr9 95908249 95908623 -46362821 + L1MC4 LINE L1 7483 7905 -137 2208 126 7 0 chr9 95908630 95908940 -46362504 - AluSx SINE Alu 0 312 1 269 161 36 0 chr9 95908950 95909006 -46362438 + L1MC4 LINE L1 7985 8042 0 911 172 0 54 chr9 95909009 95909195 -46362249 + AluJo SINE Alu 122 297 -15 325 340 100 12 chr9 95909205 95909455 -46361989 - L2 LINE L2 -1328 1986 1715 * 554 298 121 44 chr9 95909419 95909646 -46361798 + L3 LINE CR1 1121 1329 -248 661 235 0 8 chr9 95909646 95909778 -46361666 + FLAM_A SINE Alu 1 131 -2 554 298 121 44 chr9 95909778 95909939 -46361505 + L3 LINE CR1 1329 1539 -38 24 0 0 0 chr9 95911921 95911945 -46359499 + AT_rich Low_complexity Low_complexity 1 24 0 428 239 168 36 chr9 95913167 95913334 -46358110 + MIR SINE MIR 28 216 -46 330 313 69 7 chr9 95914149 95914293 -46357151 - L3 LINE CR1 -817 760 608 214 263 105 0 chr9 95914330 95914387 -46357057 - L2 LINE L2 0 3313 3251 * 537 285 110 15 chr9 95914359 95914559 -46356885 - MIR SINE MIR -29 233 15 381 281 72 7 chr9 95914563 95914716 -46356728 - MIR SINE MIR -1 261 99 284 266 21 21 chr9 95914791 95914885 -46356559 - L3 LINE CR1 -1073 504 411 525 109 11 33 chr9 95914971 95915063 -46356381 + L1PB2 LINE L1 6060 6149 -2 495 236 135 38 chr9 95915077 95915344 -46356100 + L1MC4a LINE L1 5877 6169 -1639 501 279 88 47 chr9 95916131 95916354 -46355090 - MIR SINE MIR 0 262 22 204 226 0 0 chr9 95916689 95916742 -46354702 + T-rich Low_complexity Low_complexity 1 53 0 7539 50 2 3 chr9 95916881 95918478 -46352966 + L1PA5 LINE L1 4572 6169 0 812 191 0 0 chr9 95918478 95918604 -46352840 + AluSg/x SINE Alu 135 260 -50 216 0 0 0 chr9 95918604 95918628 -46352816 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 526 338 102 3 chr9 95918647 95918931 -46352513 - L2 LINE L2 -174 3139 2828 270 296 26 35 chr9 95919018 95919133 -46352311 + (CAGAGA)n Simple_repeat Simple_repeat 4 117 0 33302 83 13 2 chr9 95919233 95923701 -46347743 - L1P LINE L1 -1615 4531 18 896 134 0 0 chr9 95923702 95923829 -46347615 - AluSq/x SINE Alu -177 135 9 393 255 85 9 chr9 95923854 95923960 -46347484 + L2 LINE L2 3136 3249 -23 2251 73 0 18 chr9 95974506 95974829 -46296615 + AluY SINE Alu 1 318 0 2209 96 3 13 chr9 95974890 95975192 -46296252 + AluSx SINE Alu 1 299 -13 1145 115 11 11 chr9 95975192 95975366 -46296078 + AluSg/x SINE Alu 134 307 -5 238 266 78 0 chr9 95975641 95975705 -46295739 + L2 LINE L2 3240 3308 -5 1832 145 50 0 chr9 95975768 95976065 -46295379 + AluSx SINE Alu 1 312 0 219 69 0 0 chr9 95977182 95977211 -46294233 + (A)n Simple_repeat Simple_repeat 1 29 0 646 264 120 29 chr9 95977838 95978114 -46293330 - L2 LINE L2 -2 3311 3011 1600 154 17 40 chr9 95978123 95978266 -46293178 + AluJb SINE Alu 1 146 -166 2282 96 0 35 chr9 95978266 95978578 -46292866 + AluY SINE Alu 6 306 -5 1600 154 17 40 chr9 95978578 95978732 -46292712 + AluJb SINE Alu 146 291 -21 2168 104 20 0 chr9 95978846 95979144 -46292300 - AluSc SINE Alu -5 304 1 977 104 0 0 chr9 95979283 95979408 -46292036 - AluSq/x SINE Alu -188 125 1 660 164 0 0 chr9 95979898 95980002 -46291442 + L1MB3 LINE L1 5845 5948 -232 248 274 0 0 chr9 95980004 95980055 -46291389 + MER66B LTR ERV1 295 345 -141 1144 146 39 10 chr9 95980064 95980289 -46291155 + L1MB3 LINE L1 5936 6149 -34 1313 200 16 71 chr9 95980388 95980698 -46290746 + AluJb SINE Alu 2 294 -8 2317 103 7 0 chr9 95980747 95981057 -46290387 - AluSp SINE Alu -1 312 1 701 282 93 34 chr9 95981060 95981415 -46290029 - L1ME4a LINE L1 -275 5846 5471 224 227 23 0 chr9 95982103 95982147 -46289297 - L2 LINE L2 -6 3266 3222 390 42 0 0 chr9 95982289 95982337 -46289107 + (TG)n Simple_repeat Simple_repeat 1 48 0 874 111 8 0 chr9 95983054 95983180 -46288264 - AluSg/x SINE Alu -6 306 180 1494 70 5 5 chr9 95983972 95984158 -46287286 + AluSx SINE Alu 1 186 -126 307 77 0 0 chr9 95984258 95984297 -46287147 + Alu SINE Alu 253 291 -11 347 253 65 21 chr9 95984297 95984435 -46287009 + MIR3 SINE MIR 35 178 -30 748 96 10 0 chr9 95984888 95984992 -46286452 - L1MB5 LINE L1 0 6174 6070 2607 56 0 0 chr9 95985019 95985324 -46286120 - AluY SINE Alu -6 305 1 2086 107 38 3 chr9 95985557 95985846 -46285598 - AluSq SINE Alu -14 299 1 399 21 0 0 chr9 95986305 95986353 -46285091 + (CA)n Simple_repeat Simple_repeat 2 49 0 282 222 152 40 chr9 95986530 95986629 -46284815 + MIR SINE MIR 44 153 -55 262 224 79 0 chr9 95986922 95986998 -46284446 - MIR SINE MIR -82 180 99 284 266 21 21 chr9 95987073 95987167 -46284277 - L3 LINE CR1 -1073 504 411 525 109 11 33 chr9 95987253 95987345 -46284099 + L1PB2 LINE L1 6060 6149 -2 495 236 135 38 chr9 95987359 95987626 -46283818 + L1MC4a LINE L1 5877 6169 -1639 501 279 88 47 chr9 95988413 95988636 -46282808 - MIR SINE MIR 0 262 22 28 48 0 0 chr9 95988973 95989015 -46282429 + AT_rich Low_complexity Low_complexity 1 42 0 43356 35 22 1 chr9 95989015 95995036 -46276408 - L1PA2 LINE L1 -4 6151 2 1100 165 46 27 chr9 95995484 95995744 -46275700 + L1MA6 LINE L1 6036 6300 0 322 282 126 10 chr9 95995835 95995938 -46275506 - MIR SINE MIR -128 134 20 22 35 0 0 chr9 95996465 95996494 -46274950 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 95997190 95997211 -46274233 + AT_rich Low_complexity Low_complexity 1 21 0 201 244 22 0 chr9 95999615 95999660 -46271784 - L2 LINE L2 -1 3312 3267 251 239 0 80 chr9 96000082 96000170 -46271274 - MIR SINE MIR -124 138 58 381 300 132 18 chr9 96000435 96000662 -46270782 + MIR SINE MIR 5 257 -5 198 296 95 37 chr9 96001211 96001400 -46270044 - MIR SINE MIR -43 219 20 206 54 0 54 chr9 96001451 96001488 -46269956 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 220 214 60 8 chr9 96002220 96002337 -46269107 + (TA)n Simple_repeat Simple_repeat 1 123 0 2367 91 7 0 chr9 96002502 96002810 -46268634 - AluSp SINE Alu -3 310 1 286 276 13 0 chr9 96002924 96003076 -46268368 + (CA)n Simple_repeat Simple_repeat 2 155 0 230 229 219 29 chr9 96003287 96003392 -46268052 - MIR SINE MIR -118 144 20 2257 101 3 3 chr9 96005320 96005617 -46265827 + AluSc SINE Alu 1 297 -12 2339 77 0 17 chr9 96005619 96005917 -46265527 + AluY SINE Alu 1 293 -18 1625 249 127 13 chr9 96006140 96006606 -46264838 + LTR40a LTR ERVL 1 519 0 1939 147 0 0 chr9 96006869 96007186 -46264258 - AluJb SINE Alu 0 317 1 396 250 47 54 chr9 96007236 96007384 -46264060 - MIR SINE MIR -90 172 26 26 0 0 0 chr9 96008031 96008057 -46263387 + AT_rich Low_complexity Low_complexity 1 26 0 199 268 37 24 chr9 96010045 96010127 -46261317 + L3 LINE CR1 1296 1378 -199 1821 130 3 62 chr9 96010233 96010540 -46260904 - AluJb SINE Alu -23 289 1 1978 120 33 0 chr9 96011917 96012216 -46259228 + AluSg SINE Alu 1 309 -1 355 169 36 72 chr9 96012247 96012330 -46259114 - MER116 DNA Mariner 0 80 1 1206 203 89 62 chr9 96012585 96012955 -46258489 + MSTD LTR MaLR 17 396 0 2450 176 17 31 chr9 96012958 96013434 -46258010 + MSTD-int LTR MaLR 4 472 -1263 44011 30 21 1 chr9 96013468 96019499 -46251945 - L1HS LINE L1 0 6155 2 4839 205 69 72 chr9 96019503 96019688 -46251756 + MSTD-int LTR MaLR 402 586 -1149 2104 120 0 0 chr9 96019688 96019987 -46251457 + AluSx SINE Alu 1 299 -13 2063 119 0 13 chr9 96019997 96020300 -46251144 + AluSx SINE Alu 1 299 -13 4839 205 69 72 chr9 96020300 96021078 -46250366 + MSTD-int LTR MaLR 595 1393 -342 1420 190 3 23 chr9 96021078 96021388 -46250056 + AluJo SINE Alu 1 304 -8 4839 205 69 72 chr9 96021388 96021729 -46249715 + MSTD-int LTR MaLR 1393 1734 -1 1020 158 30 141 chr9 96021729 96022097 -46249347 + MLT1A1 LTR MaLR 39 365 0 26 30 0 0 chr9 96022303 96022336 -46249108 + AT_rich Low_complexity Low_complexity 1 33 0 2138 131 54 49 chr9 96022373 96022551 -46248893 + MLT1B LTR MaLR 1 177 -213 1753 167 7 0 chr9 96022551 96022857 -46248587 + AluJb SINE Alu 1 308 -4 2138 131 54 49 chr9 96022857 96023066 -46248378 + MLT1B LTR MaLR 177 390 0 1376 274 107 2 chr9 96023152 96023700 -46247744 - L1ME3A LINE L1 -211 5951 5317 * 5002 169 41 7 chr9 96023694 96024982 -46246462 - L1MB3 LINE L1 -1 6182 4848 704 196 15 0 chr9 96024990 96025123 -46246321 + FLAM_A SINE Alu 8 142 0 1885 133 0 29 chr9 96025131 96025439 -46246005 + AluSx SINE Alu 1 299 -13 1396 203 16 0 chr9 96025444 96025749 -46245695 - L1MB3 LINE L1 -1295 4851 4542 1158 164 0 0 chr9 96025758 96025947 -46245497 + AluSx SINE Alu 3 191 -121 949 183 56 25 chr9 96025949 96026146 -46245298 - Charlie1b DNA MER1_type -280 243 41 571 281 40 60 chr9 96026927 96027314 -46244130 + L1M2 LINE L1 96 1753 -893 2368 153 46 10 chr9 96027314 96027727 -46243717 + MSTA LTR MaLR 1 428 0 9956 162 18 7 chr9 96027727 96028096 -46243348 + MSTA-int LTR MaLR 1 364 -1287 2024 102 42 0 chr9 96028096 96028379 -46243065 - AluSx SINE Alu -17 295 1 9956 162 18 7 chr9 96028379 96029642 -46241802 + MSTA-int LTR MaLR 364 1651 0 2134 146 108 10 chr9 96029642 96030032 -46241412 + MSTA LTR MaLR 1 428 0 367 168 0 103 chr9 96030035 96030109 -46241335 + L1 LINE L1 4541 4602 -1544 1815 101 8 19 chr9 96030109 96030377 -46241067 - AluY SINE Alu -2 309 45 367 168 0 103 chr9 96030377 96030409 -46241035 + L1 LINE L1 4602 4636 -1510 2179 120 131 11 chr9 96030473 96030855 -46240589 + MSTA LTR MaLR 1 428 0 392 217 14 0 chr9 96030914 96030983 -46240461 + MER58 DNA MER1_type 2 71 -144 435 219 8 8 chr9 96030988 96031107 -46240337 + L1MC3 LINE L1 6980 7098 -687 250 212 50 61 chr9 96031107 96031206 -46240238 + MLT1F1 LTR MaLR 62 159 -408 2746 194 28 9 chr9 96031206 96031769 -46239675 + L1MC3 LINE L1 7212 7785 0 1434 202 82 38 chr9 96031786 96032153 -46239291 + MLT1B LTR MaLR 6 388 -2 2014 105 7 14 chr9 96032224 96032518 -46238926 + AluSq SINE Alu 2 293 -20 1098 228 145 60 chr9 96032549 96032897 -46238547 + L1MC5 LINE L1 7252 7569 -392 1763 119 26 70 chr9 96032897 96033209 -46238235 - AluSx SINE Alu -14 298 1 1098 228 145 60 chr9 96033209 96033508 -46237936 + L1MC5 LINE L1 7569 7954 -7 * 1319 240 50 48 chr9 96033504 96033959 -46237485 + L1ME1 LINE L1 5 460 -5936 960 271 29 11 chr9 96033956 96034237 -46237207 + L1ME1 LINE L1 3929 4214 -2001 * 4565 129 29 6 chr9 96034237 96034935 -46236509 + MER50 LTR ERV1 1 714 -20 3625 186 45 121 chr9 96034935 96035234 -46236210 + L1ME1 LINE L1 4213 4533 -1702 1287 231 49 53 chr9 96035234 96035701 -46235743 - MLT1C LTR MaLR -2 465 1 3625 186 45 121 chr9 96035701 96036148 -46235296 + L1ME1 LINE L1 4533 5012 -1223 610 206 7 7 chr9 96036148 96036284 -46235160 - FLAM_C SINE Alu -4 139 4 3625 186 45 121 chr9 96036284 96037042 -46234402 + L1ME1 LINE L1 5012 5673 -562 4178 86 15 2 chr9 96037042 96037589 -46233855 + MER41A LTR ERV1 1 554 0 3625 186 45 121 chr9 96037589 96037978 -46233466 + L1ME1 LINE L1 5673 6090 -145 1531 186 135 77 chr9 96037981 96038158 -46233286 - LTR36 LTR ERV1 -2 609 444 2135 100 0 20 chr9 96038158 96038459 -46232985 + AluSg SINE Alu 1 295 -15 1531 186 135 77 chr9 96038459 96038829 -46232615 - LTR36 LTR ERV1 -167 444 30 2033 122 0 7 chr9 96038847 96039142 -46232302 + AluSx SINE Alu 1 293 -19 486 162 30 10 chr9 96039143 96039242 -46232202 - MER50 LTR ERV1 -633 101 1 21 0 0 0 chr9 96039509 96039530 -46231914 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr9 96039679 96039703 -46231741 + (T)n Simple_repeat Simple_repeat 1 24 0 1206 132 5 24 chr9 96042370 96042583 -46228861 + L1MB3 LINE L1 5966 6174 -9 1937 128 0 16 chr9 96042583 96042887 -46228557 - AluSg SINE Alu -11 299 1 262 357 20 0 chr9 96042926 96043024 -46228420 + MIR SINE MIR 151 250 -12 611 174 140 98 chr9 96043285 96043461 -46227983 + MER5C DNA MER1_type 76 266 -58 2076 142 0 0 chr9 96043461 96043772 -46227672 + AluSq SINE Alu 1 311 -2 611 174 140 98 chr9 96043772 96043830 -46227614 + MER5C DNA MER1_type 266 320 -4 292 252 78 26 chr9 96043833 96043948 -46227496 - MLT1I LTR MaLR -15 394 274 277 269 80 69 chr9 96044353 96044528 -46226916 + L2 LINE L2 2871 3047 -225 563 242 178 72 chr9 96044552 96044883 -46226561 - MLT1L LTR MaLR -34 581 216 1946 126 20 0 chr9 96045033 96045326 -46226118 + AluSx SINE Alu 1 299 -13 374 300 77 45 chr9 96045577 96045824 -46225620 - MLT1L LTR MaLR -191 424 170 219 315 0 0 chr9 96045908 96045962 -46225482 + L2 LINE L2 3137 3190 -82 936 119 0 0 chr9 96045973 96046107 -46225337 - AluJo SINE Alu -178 134 1 2159 98 0 0 chr9 96046404 96046700 -46224744 - AluSx SINE Alu -16 296 1 305 241 184 43 chr9 96046807 96046948 -46224496 + MIR SINE MIR 84 244 -18 371 183 0 28 chr9 96047275 96047346 -46224098 - MER58 DNA MER1_type -10 2410 2342 2230 88 3 0 chr9 96047404 96047698 -46223746 + AluSp SINE Alu 1 295 -18 229 254 32 0 chr9 96047705 96047768 -46223676 - MER58 DNA MER1_type -2329 91 27 327 261 85 39 chr9 96049242 96049395 -46222049 - HAL1 LINE L1 -38 2469 2310 2394 168 103 7 chr9 96050228 96050693 -46220751 - MER74A LTR ERVL -41 517 8 2391 45 0 3 chr9 96052201 96052493 -46218951 - AluY SINE Alu -20 291 1 344 301 0 0 chr9 96053089 96053159 -46218285 - MIR SINE MIR -33 229 160 260 268 129 75 chr9 96053159 96053293 -46218151 + MIR SINE MIR 3 150 -112 1983 134 0 3 chr9 96053293 96053619 -46217825 + AluSx SINE Alu 1 325 0 260 268 129 75 chr9 96053619 96053678 -46217766 + MIR SINE MIR 150 204 -58 2740 240 25 9 chr9 96054321 96055013 -46216431 + L1MEc LINE L1 285 987 -5409 24 32 0 0 chr9 96055045 96055076 -46216368 + AT_rich Low_complexity Low_complexity 1 31 0 2304 82 7 0 chr9 96055076 96055380 -46216064 - AluY SINE Alu -5 306 1 1832 164 3 0 chr9 96055543 96055847 -46215597 - AluJb SINE Alu -7 305 1 460 264 115 79 chr9 96056035 96056479 -46214965 - MLT1J LTR MaLR -49 462 3 398 341 62 10 chr9 96057695 96057903 -46213541 - MIR SINE MIR -5 257 39 1634 152 17 30 chr9 96057985 96058281 -46213163 + AluJo SINE Alu 1 292 -20 267 350 72 36 chr9 96058381 96058604 -46212840 - MIR SINE MIR -19 243 13 236 236 64 109 chr9 96058605 96058766 -46212678 - MLT1K LTR MaLR -2 586 436 2211 87 6 13 chr9 96058766 96059077 -46212367 - AluSg SINE Alu -1 309 1 236 236 64 109 chr9 96059077 96059135 -46212309 - MLT1K LTR MaLR -152 436 377 874 255 92 46 chr9 96059371 96059697 -46211747 - MER102b DNA MER1_type 0 341 1 2484 181 62 16 chr9 96059961 96060457 -46210987 - MLT2B1 LTR ERVL -1 519 1 1536 156 0 67 chr9 96061027 96061342 -46210102 - AluSx SINE Alu -18 294 1 454 286 171 30 chr9 96061366 96061670 -46209774 - L2 LINE L2 -9 3304 2958 390 238 204 7 chr9 96062294 96062441 -46209003 - MLT1J LTR MaLR -333 178 3 2408 87 0 0 chr9 96062608 96062906 -46208538 + AluSg1 SINE Alu 1 298 -11 909 93 0 0 chr9 96062965 96063083 -46208361 - AluSg/x SINE Alu -16 296 179 234 337 54 0 chr9 96063093 96063185 -46208259 - L2 LINE L2 -18 3295 3199 2188 113 0 10 chr9 96063286 96063587 -46207857 - AluSx SINE Alu -14 298 1 458 264 109 34 chr9 96063599 96063838 -46207606 - L1ME LINE L1 -322 5799 5543 400 213 95 65 chr9 96063879 96064048 -46207396 - L1P5 LINE L1 -694 5457 5284 973 223 54 25 chr9 96064078 96064320 -46207124 - MIR SINE MIR -1 261 13 215 172 172 47 chr9 96064796 96064860 -46206584 - L2 LINE L2 -49 3223 3152 723 133 7 30 chr9 96065473 96065608 -46205836 + AluJb SINE Alu 173 304 -8 238 164 7 0 chr9 96065658 96065722 -46205722 - MIR SINE MIR -56 152 88 28 0 0 0 chr9 96066189 96066217 -46205227 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 96066468 96066499 -46204945 + GC_rich Low_complexity Low_complexity 1 31 0 202 353 0 0 chr9 96066816 96066901 -46204543 + G-rich Low_complexity Low_complexity 1 85 0 347 212 71 35 chr9 96068190 96068303 -46203141 - MER112 DNA MER1_type 0 260 144 621 218 42 0 chr9 96068796 96068938 -46202506 - MER33 DNA MER1_type -176 148 1 26 30 0 0 chr9 96068951 96068984 -46202460 + AT_rich Low_complexity Low_complexity 1 33 0 907 121 0 57 chr9 96069089 96069230 -46202214 - FLAM_C SINE Alu 0 133 1 1086 199 154 17 chr9 96069402 96069694 -46201750 - MER2 DNA MER2_type 0 345 14 564 158 178 7 chr9 96070681 96070833 -46200611 + L1MA8 LINE L1 6113 6290 -1 188 256 194 8 chr9 96071047 96071176 -46200268 - MIR SINE MIR -12 250 98 26 0 0 0 chr9 96071291 96071317 -46200127 + AT_rich Low_complexity Low_complexity 1 26 0 2179 111 7 0 chr9 96071324 96071612 -46199832 - AluSq SINE Alu -23 290 1 2129 118 0 0 chr9 96071633 96071921 -46199523 - AluSg SINE Alu -22 288 1 277 204 56 0 chr9 96072388 96072442 -46199002 - MER112 DNA MER1_type -4 256 200 268 236 0 11 chr9 96072756 96072845 -46198599 + T-rich Low_complexity Low_complexity 3 90 0 2106 109 3 26 chr9 96072859 96073161 -46198283 + AluSx SINE Alu 1 295 -17 190 244 30 163 chr9 96073420 96073555 -46197889 - MIR SINE MIR -60 148 32 856 168 0 72 chr9 96073604 96073771 -46197673 - FRAM SINE Alu -21 155 1 405 106 2 0 chr9 96073775 96073837 -46197607 - L1M3 LINE L1 -511 5663 5601 2682 221 79 42 chr9 96073864 96074584 -46196860 - MER21B LTR ERV1 -105 758 12 685 128 317 53 chr9 96074623 96074850 -46196594 - L1M4 LINE L1 -607 5577 5291 587 223 81 0 chr9 96074888 96075036 -46196408 - L1M4 LINE L1 -1198 4948 4789 29 0 0 0 chr9 96077669 96077698 -46193746 + AT_rich Low_complexity Low_complexity 1 29 0 869 154 0 0 chr9 96078033 96078169 -46193275 + AluSq/x SINE Alu 1 136 -176 2073 90 17 7 chr9 96078169 96078458 -46192986 + AluSx SINE Alu 1 292 -20 1245 157 140 0 chr9 96079732 96079967 -46191477 - AluJb SINE Alu -14 298 31 518 146 24 37 chr9 96080143 96080251 -46191193 - AluSx SINE Alu 0 307 201 926 114 0 0 chr9 96080274 96080397 -46191047 - AluSx SINE Alu -180 133 11 1565 133 91 4 chr9 96080755 96081018 -46190426 + AluSx SINE Alu 2 287 -25 546 221 50 14 chr9 96082122 96082262 -46189182 - L1MC1 LINE L1 0 6333 6189 331 143 186 14 chr9 96082832 96082902 -46188542 + MLT1L LTR MaLR 1 82 -533 1462 201 7 0 chr9 96083031 96083304 -46188140 - AluJb SINE Alu -34 278 4 271 190 138 0 chr9 96083321 96083379 -46188065 + MLT1L LTR MaLR 328 393 -222 290 67 22 0 chr9 96084249 96084294 -46187150 + (TG)n Simple_repeat Simple_repeat 2 47 0 2392 73 0 7 chr9 96084946 96085235 -46186209 + AluY SINE Alu 1 287 -24 362 218 46 0 chr9 96085304 96085391 -46186053 - L1MB7 LINE L1 -261 6421 6331 527 216 0 0 chr9 96085392 96085480 -46185964 - AluJb SINE Alu -25 287 200 980 175 39 74 chr9 96085483 96085538 -46185906 - L1MB7 LINE L1 -347 6317 6262 2438 80 0 3 chr9 96085538 96085849 -46185595 - AluY SINE Alu -1 310 1 2066 118 6 34 chr9 96085849 96086170 -46185274 - AluSx SINE Alu 0 312 1 980 175 39 74 chr9 96086170 96086370 -46185074 - L1MB7 LINE L1 -400 6264 6070 2885 208 82 30 chr9 96086375 96086856 -46184588 - L1MB7 LINE L1 -1214 5430 4890 985 187 23 0 chr9 96086856 96087027 -46184417 - FAM SINE Alu 0 175 1 2885 208 82 30 chr9 96087027 96087340 -46184104 - L1MB7 LINE L1 -1754 4890 4595 1025 185 72 27 chr9 96087345 96087600 -46183844 - MSTD LTR MaLR 0 396 91 2329 245 36 70 chr9 96087600 96087879 -46183565 - L1MB7 LINE L1 -5216 1326 1039 1970 121 3 14 chr9 96087879 96088169 -46183275 + AluSx SINE Alu 1 287 -25 243 0 0 0 chr9 96088178 96088205 -46183239 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2329 245 36 70 chr9 96088205 96088828 -46182616 - L1MB7 LINE L1 -5511 1031 445 2367 89 0 3 chr9 96088915 96089219 -46182225 + AluY SINE Alu 1 303 -8 406 250 30 49 chr9 96089348 96089512 -46181932 - L1MB7 LINE L1 -6381 161 1 846 193 66 29 chr9 96089531 96089774 -46181670 - L1M4 LINE L1 -2012 4632 4381 15245 212 27 30 chr9 96089837 96091248 -46180196 - L1PB3 LINE L1 -2 6868 5454 2939 109 25 32 chr9 96091248 96091478 -46179966 - MSTA LTR MaLR 0 428 201 2222 95 0 26 chr9 96091478 96091784 -46179660 - AluSq SINE Alu -15 298 1 2939 109 25 32 chr9 96091784 96091984 -46179460 - MSTA LTR MaLR -227 201 1 15245 212 27 30 chr9 96091984 96092473 -46178971 - L1PB3 LINE L1 -1416 5454 4965 2008 112 52 0 chr9 96092473 96092759 -46178685 - AluSq SINE Alu -12 301 1 15245 212 27 30 chr9 96092759 96094127 -46177317 - L1PB3 LINE L1 -1905 4965 3594 2111 135 0 0 chr9 96094127 96094430 -46177014 - AluSx SINE Alu -9 303 1 15245 212 27 30 chr9 96094430 96095029 -46176415 - L1PB3 LINE L1 -3276 3594 2994 1989 135 13 0 chr9 96095029 96095333 -46176111 + AluSq SINE Alu 1 308 -5 15245 212 27 30 chr9 96095333 96099186 -46172258 - L1PB3 LINE L1 -3876 2994 3 414 208 40 20 chr9 96099206 96099307 -46172137 - L1M4 LINE L1 -2253 4391 4289 259 258 186 16 chr9 96099310 96099434 -46172010 - L1M4 LINE L1 -5307 1235 1091 2347 88 14 0 chr9 96099437 96099733 -46171711 + AluSc SINE Alu 1 300 -9 255 306 0 12 chr9 96099790 96099875 -46171569 - L1M4 LINE L1 -5580 962 879 2698 137 9 52 chr9 96100025 96100327 -46171117 + MSTC LTR MaLR 1 279 -149 2390 178 34 2 chr9 96100327 96100738 -46170706 - MSTB LTR MaLR -2 424 1 2698 137 9 52 chr9 96100738 96100880 -46170564 + MSTC LTR MaLR 279 426 -2 1187 222 13 8 chr9 96101395 96101634 -46169810 + Charlie1a DNA MER1_type 1 240 -1215 1082 122 7 0 chr9 96101660 96101808 -46169636 + AluSq/x SINE Alu 3 151 -161 425 159 0 0 chr9 96101808 96101877 -46169567 + Alu SINE Alu 229 297 -13 2093 145 0 6 chr9 96101885 96102196 -46169248 + AluSx SINE Alu 1 309 -3 1814 136 77 0 chr9 96102197 96102470 -46168974 + AluSq SINE Alu 1 294 -19 1597 171 211 36 chr9 96102470 96102642 -46168802 + Charlie1a DNA MER1_type 248 389 -2372 1420 191 57 18 chr9 96102642 96102924 -46168520 - AluJo SINE Alu -19 293 1 1597 171 211 36 chr9 96102924 96103196 -46168248 + Charlie1a DNA MER1_type 389 770 -685 1151 116 0 0 chr9 96103196 96103351 -46168093 + AluSg/x SINE Alu 156 310 0 593 143 0 0 chr9 96103351 96103442 -46168002 + Charlie1a DNA MER1_type 763 853 -602 3161 142 24 15 chr9 96103442 96103992 -46167452 + L1MA7 LINE L1 5238 5791 -500 21 0 0 0 chr9 96104031 96104052 -46167392 + AT_rich Low_complexity Low_complexity 1 21 0 1490 132 79 85 chr9 96104052 96104392 -46167052 + L1MA7 LINE L1 5782 6119 -172 276 198 59 79 chr9 96104402 96104436 -46167008 + AluS SINE Alu 1 34 -269 271 211 0 0 chr9 96104436 96104488 -46166956 + LTR30 LTR ERV1 1 52 -670 276 198 59 79 chr9 96104488 96104503 -46166941 + AluS SINE Alu 34 78 -225 696 117 13 213 chr9 96104511 96104750 -46166694 + LTR12 LTR ERV1 100 290 -424 265 188 0 47 chr9 96104758 96104822 -46166622 + LTR30 LTR ERV1 564 624 -98 683 158 26 9 chr9 96104822 96104936 -46166508 + pTR5 LTR ERV1 52 167 -2271 1722 148 7 11 chr9 96104940 96105211 -46166233 + AluSx SINE Alu 31 300 -12 754 142 74 0 chr9 96105215 96105363 -46166081 + L1MA7 LINE L1 6130 6288 -3 1959 100 30 30 chr9 96105392 96105691 -46165753 + AluSc SINE Alu 1 299 -10 2278 191 83 17 chr9 96105776 96106215 -46165229 + Charlie1a DNA MER1_type 837 1325 -1436 1839 156 3 10 chr9 96106215 96106523 -46164921 - AluJo SINE Alu -6 306 1 2278 191 83 17 chr9 96106523 96106664 -46164780 + Charlie1a DNA MER1_type 1325 1455 0 672 234 14 48 chr9 96106664 96106708 -46164736 - L1MEc LINE L1 -4332 2064 2020 2396 80 0 6 chr9 96106708 96107021 -46164423 - AluY SINE Alu 0 311 1 672 234 14 48 chr9 96107021 96107185 -46164259 - L1MEc LINE L1 -4376 2020 1863 697 316 118 11 chr9 96107259 96107633 -46163811 + LTR16B LTR ERVL 51 464 0 1334 263 40 45 chr9 96107661 96108243 -46163201 - L1MEc LINE L1 -4606 1790 1212 552 211 197 14 chr9 96108282 96108472 -46162972 - L1MA10 LINE L1 0 6334 5960 339 97 14 28 chr9 96108472 96108544 -46162900 + (TTTCC)n Simple_repeat Simple_repeat 1 71 0 2143 127 6 34 chr9 96108544 96108866 -46162578 - AluSq SINE Alu 0 313 1 2410 221 20 37 chr9 96109037 96109806 -46161638 - L1ME1 LINE L1 -309 5857 5094 2229 102 0 13 chr9 96109806 96110121 -46161323 + AluY SINE Alu 1 311 0 2410 221 20 37 chr9 96110121 96110171 -46161273 - L1ME1 LINE L1 -1072 5094 5045 2301 194 57 2 chr9 96110193 96110653 -46160791 - L1MD2 LINE L1 -10 6349 5865 217 291 8 87 chr9 96110803 96110930 -46160514 + MIR SINE MIR 116 232 -30 487 256 110 18 chr9 96111128 96111292 -46160152 + MIR SINE MIR 59 237 -25 271 258 16 0 chr9 96111288 96111350 -46160094 - MIR SINE MIR -101 107 45 * 339 270 100 0 chr9 96112245 96112345 -46159099 + MIR SINE MIR 110 219 -43 198 261 75 9 chr9 96112626 96112751 -46158693 + MIR SINE MIR 74 229 -33 1167 176 56 66 chr9 96113013 96113137 -46158307 - MER33 DNA MER1_type -2264 321 197 1198 153 37 70 chr9 96113137 96113378 -46158066 + MER46A DNA MER2_type 2 234 -2 1167 176 56 66 chr9 96113378 96113572 -46157872 - MER33 DNA MER1_type -2388 197 6 226 140 200 0 chr9 96114124 96114174 -46157270 - AluSc SINE Alu -3 296 237 2032 141 52 23 chr9 96114175 96114559 -46156885 + MER61B LTR ERV1 1 395 -30 1551 146 13 4 chr9 96114570 96114809 -46156635 - AluJb SINE Alu -71 241 1 362 164 16 180 chr9 96114810 96114932 -46156512 - L1MD2 LINE L1 -2123 5685 5584 332 265 95 20 chr9 96114941 96114957 -46156487 - L1MA10 LINE L1 -1 6333 6318 2392 199 65 28 chr9 96114957 96115288 -46156156 - L1ME1 LINE L1 -4 6162 5845 5370 159 20 6 chr9 96115288 96116141 -46155303 + MER6 DNA MER2_type 1 865 0 2392 199 65 28 chr9 96116141 96116272 -46155172 - L1ME1 LINE L1 -321 5845 5720 2131 111 0 20 chr9 96116272 96116570 -46154874 - AluSq SINE Alu -21 292 1 2392 199 65 28 chr9 96116570 96116688 -46154756 - L1ME1 LINE L1 -446 5720 5559 * 42665 61 4 3 chr9 96116672 96122814 -46148630 + L1PA5 LINE L1 5 6154 0 1702 201 9 0 chr9 96122815 96123164 -46148280 - L1ME1 LINE L1 -572 5592 5239 1888 150 0 38 chr9 96123164 96123478 -46147966 + MER44D DNA MER2_type 2 573 -36 322 226 70 35 chr9 96123530 96123645 -46147799 + LTR16B LTR ERVL 346 464 0 296 335 92 17 chr9 96123704 96123997 -46147447 + L1MC/D LINE L1 5404 5718 -2090 2628 176 41 4 chr9 96124127 96124638 -46146806 - L1MB4 LINE L1 0 6180 5651 857 148 0 0 chr9 96124798 96124926 -46146518 + FLAM_C SINE Alu 15 142 -1 2323 89 3 0 chr9 96124944 96125235 -46146209 + AluSp SINE Alu 5 296 -17 2418 93 0 0 chr9 96125636 96125947 -46145497 + AluY SINE Alu 1 311 0 1117 248 58 2 chr9 96125954 96126350 -46145094 + L1M4 LINE L1 3047 3464 -2682 1755 162 61 3 chr9 96126353 96126650 -46144794 - MSTB LTR MaLR -1 425 112 273 57 0 0 chr9 96126654 96126689 -46144755 + (CAT)n Simple_repeat Simple_repeat 2 36 0 2195 160 9 42 chr9 96126693 96127119 -46144325 + LTR3 LTR ERVK 5 416 -16 266 57 0 0 chr9 96127141 96127176 -46144268 + HERVK3 LTR ERVK 2 36 -7207 1801 175 0 0 chr9 96127184 96127470 -46143974 - AluJo SINE Alu -26 286 1 763 126 8 0 chr9 96127471 96127590 -46143854 - MSTB LTR MaLR -306 120 1 1611 233 30 24 chr9 96127603 96127703 -46143741 + L1M4 LINE L1 3475 3573 -2573 2191 110 7 0 chr9 96127703 96127995 -46143449 + AluSg SINE Alu 1 294 -16 1611 233 30 24 chr9 96127995 96128353 -46143091 + L1M4 LINE L1 3573 3936 -2210 1389 141 24 0 chr9 96128433 96128646 -46142798 + MLT2B2 LTR ERVL 1 218 -297 1425 92 0 0 chr9 96128646 96128830 -46142614 - AluSg/x SINE Alu -7 303 120 2123 174 44 22 chr9 96128932 96129345 -46142099 - L1M3 LINE L1 -468 5712 5291 1749 144 7 0 chr9 96129353 96129624 -46141820 - AluJo SINE Alu -9 303 31 247 175 0 0 chr9 96129636 96129676 -46141768 + LTR30 LTR ERV1 13 52 -670 1090 101 133 258 chr9 96129676 96130221 -46141223 + LTR12 LTR ERV1 55 482 -232 5146 251 60 26 chr9 96130245 96130388 -46141056 - L1 LINE L1 -867 5279 5142 2303 107 0 3 chr9 96130388 96130688 -46140756 - AluSx SINE Alu -13 299 1 5146 251 60 26 chr9 96130688 96131929 -46139515 - L1 LINE L1 -1004 5142 3735 2076 125 13 10 chr9 96131929 96132240 -46139204 - AluSx SINE Alu 0 312 1 5146 251 60 26 chr9 96132240 96133062 -46138382 - L1 LINE L1 -2411 3735 2942 1466 167 252 28 chr9 96133037 96133497 -46137947 - L1M4c LINE L1 -3928 2456 1804 * 1035 168 0 6 chr9 96133505 96133672 -46137772 - AluSg/x SINE Alu -11 299 134 7067 194 64 43 chr9 96133672 96133756 -46137688 - L1M4c LINE L1 -4589 1795 1714 2299 110 0 0 chr9 96133756 96134057 -46137387 - AluSx SINE Alu -11 301 1 7067 194 64 43 chr9 96134057 96134854 -46136590 - L1M4c LINE L1 -4670 1714 935 1947 125 0 14 chr9 96134854 96135135 -46136309 + AluSg SINE Alu 34 310 0 7067 194 64 43 chr9 96135135 96135982 -46135462 - L1M4c LINE L1 -5449 935 30 255 280 58 108 chr9 96136749 96137400 -46134044 + L1MEd LINE L1 487 1169 -4962 2244 95 11 0 chr9 96137400 96137683 -46133761 + AluSg SINE Alu 1 286 -24 255 280 58 108 chr9 96137683 96137762 -46133682 + L1MEd LINE L1 1169 1051 -5080 542 231 0 0 chr9 96137762 96137866 -46133578 + U13 snRNA snRNA 1 104 0 255 280 58 108 chr9 96137866 96138040 -46133404 + L1MEd LINE L1 1050 1231 -4900 266 194 30 15 chr9 96138090 96138157 -46133287 + L1M2 LINE L1 2442 2509 -4340 2087 110 0 3 chr9 96138555 96138837 -46132607 + AluSq SINE Alu 1 281 -32 593 293 97 46 chr9 96138938 96139289 -46132155 + ERVL LTR ERVL 3915 4283 -1481 355 39 19 0 chr9 96139414 96139466 -46131978 + LTR12 LTR ERV1 1 53 -661 1095 120 0 0 chr9 96139596 96139746 -46131698 - AluSx SINE Alu -16 294 145 371 244 0 11 chr9 96139750 96139840 -46131604 - L1M4 LINE L1 -2556 3590 3502 1013 88 22 0 chr9 96139849 96139985 -46131459 - AluSx SINE Alu -173 139 1 4696 184 41 79 chr9 96140043 96140907 -46130537 + L1MC/D LINE L1 4147 5043 -1172 2039 128 7 23 chr9 96140907 96141213 -46130231 + AluSx SINE Alu 3 303 -9 4696 184 41 79 chr9 96141213 96141539 -46129905 + L1MC/D LINE L1 5043 5278 -937 2258 111 3 13 chr9 96141539 96141855 -46129589 - AluSq SINE Alu 0 313 1 4696 184 41 79 chr9 96141855 96142043 -46129401 + L1MC/D LINE L1 5278 5472 -743 904 273 52 11 chr9 96142050 96142321 -46129123 + ERVL LTR ERVL 4741 5022 -742 1118 285 81 20 chr9 96142322 96142816 -46128628 - L1M4 LINE L1 -2374 3772 3249 971 279 169 3 chr9 96142824 96143186 -46128258 + MLT2E LTR ERVL 1 422 -206 2455 83 0 0 chr9 96143215 96143516 -46127928 - AluY SINE Alu -10 301 1 4933 96 0 6 chr9 96143516 96144193 -46127251 - L1PB1 LINE L1 -44 6107 5435 470 252 0 0 chr9 96144247 96144362 -46127082 + MLT2E LTR ERVL 506 620 -8 446 199 163 10 chr9 96144373 96144569 -46126875 - L1M4 LINE L1 -2921 3225 3000 2348 108 0 0 chr9 96144572 96144878 -46126566 + AluSx SINE Alu 1 306 -6 7924 31 7 1 chr9 96144892 96145906 -46125538 + L1PA4 LINE L1 5136 6154 -1 272 229 0 0 chr9 96145906 96145967 -46125477 + AluJb SINE Alu 74 134 -168 36 23 0 0 chr9 96145973 96146016 -46125428 + AT_rich Low_complexity Low_complexity 1 43 0 295 185 0 15 chr9 96146101 96146166 -46125278 - L1M4 LINE L1 -3142 3004 2941 6897 98 7 21 chr9 96146166 96147252 -46124192 - L1PA13 LINE L1 -4 6159 5097 2318 98 0 22 chr9 96147252 96147567 -46123877 + AluSx SINE Alu 3 310 -2 6897 98 7 21 chr9 96147567 96148333 -46123111 - L1PA13 LINE L1 -1066 5097 4322 2729 212 65 108 chr9 96148698 96149075 -46122369 + L1MDa LINE L1 1432 1824 -5133 2356 108 0 0 chr9 96149075 96149381 -46122063 + AluSx SINE Alu 1 306 -6 2729 212 65 108 chr9 96149381 96149715 -46121729 + L1MDa LINE L1 1824 2171 -4786 2176 86 0 0 chr9 96149715 96149983 -46121461 + AluSx SINE Alu 1 268 -44 454 86 0 0 chr9 96149983 96150041 -46121403 + U6 snRNA snRNA 47 104 -3 2729 212 65 108 chr9 96150041 96150552 -46120892 + L1MDa LINE L1 2169 2658 -4299 * 3168 233 116 14 chr9 96150536 96151374 -46120070 + L1MDa LINE L1 418 1340 -5617 784 117 10 0 chr9 96151380 96151515 -46119929 + AluSg/x SINE Alu 182 317 0 328 225 25 12 chr9 96151515 96151595 -46119849 + L1MDa LINE L1 2650 2730 -4227 1200 102 6 6 chr9 96151629 96151795 -46119649 - AluSx SINE Alu -146 166 1 1540 218 78 9 chr9 96151833 96152177 -46119267 + L1MDa LINE L1 112 479 -6380 1057 204 196 6 chr9 96152188 96152550 -46118894 + L1MDa LINE L1 3383 3813 -3144 2318 87 10 3 chr9 96152550 96152848 -46118596 - AluSq SINE Alu -13 300 1 1279 133 10 0 chr9 96153514 96153709 -46117735 + AluJb SINE Alu 114 310 -2 542 308 91 5 chr9 96153710 96153918 -46117526 + MLT1B LTR MaLR 165 390 0 301 291 26 17 chr9 96153991 96154108 -46117336 - L1ME3A LINE L1 -208 5962 5845 537 285 110 15 chr9 96154274 96154474 -46116970 + MIR SINE MIR 15 233 -29 214 263 105 0 chr9 96154446 96154503 -46116941 + L2 LINE L2 3251 3313 0 * 330 313 69 7 chr9 96154540 96154684 -46116760 + L3 LINE CR1 608 760 -817 366 371 0 0 chr9 96156501 96156617 -46114827 + FLAM_A SINE Alu 1 116 -17 200 219 0 47 chr9 96157945 96158009 -46113435 + MIR3 SINE MIR 6 66 -142 308 312 41 17 chr9 96158424 96158559 -46112885 - MER90 LTR ERV1 -426 173 28 317 332 100 18 chr9 96158859 96159087 -46112357 - HERVR LTR ERV1 -3721 3671 3454 243 0 0 0 chr9 96159523 96159550 -46111894 + (TATG)n Simple_repeat Simple_repeat 4 30 0 232 258 186 10 chr9 96159705 96159802 -46111642 - L2 LINE L2 -768 2546 2433 974 207 114 73 chr9 96159805 96160148 -46111296 - MER44D DNA MER2_type -81 524 113 275 205 137 7 chr9 96160148 96160264 -46111180 + AluS SINE Alu 18 92 -211 1084 240 92 45 chr9 96363142 96363634 -45907810 + LTR33 LTR ERVL 1 515 -6 241 230 103 0 chr9 96364425 96364512 -45906932 - MIR SINE MIR -57 151 56 189 121 0 0 chr9 96365186 96365219 -45906225 + (GA)n Simple_repeat Simple_repeat 1 33 0 222 279 32 26 chr9 96365228 96365382 -45906062 + GA-rich Low_complexity Low_complexity 6 160 0 * 357 192 51 45 chr9 96365315 96365471 -45905973 + (CAGAGA)n Simple_repeat Simple_repeat 5 161 0 208 276 61 41 chr9 96366010 96366108 -45905336 + MIR SINE MIR 62 162 -46 400 236 7 21 chr9 96367784 96367899 -45903545 - MIR SINE MIR -38 224 113 2287 117 3 0 chr9 96368044 96368343 -45903101 + AluSx SINE Alu 1 300 -12 223 232 236 56 chr9 96368702 96368862 -45902582 - MIR SINE MIR -43 219 27 378 0 0 0 chr9 96369725 96369767 -45901677 + (TG)n Simple_repeat Simple_repeat 1 42 0 634 240 63 46 chr9 96370855 96371030 -45900414 - MER5B DNA MER1_type 0 178 1 1981 147 0 17 chr9 96371073 96371373 -45900071 - AluJo SINE Alu -17 295 1 220 382 98 0 chr9 96372067 96372169 -45899275 + L2 LINE L2 3159 3270 -2 187 379 35 14 chr9 96372141 96372286 -45899158 - L3b LINE CR1 -177 1406 1259 * 213 121 0 0 chr9 96373158 96373191 -45898253 + (TG)n Simple_repeat Simple_repeat 1 33 0 2376 78 3 7 chr9 96373800 96374107 -45897337 + AluSx SINE Alu 1 306 -6 356 321 133 23 chr9 96375064 96375282 -45896162 - MIR SINE MIR -14 248 7 29 0 0 0 chr9 96375497 96375526 -45895918 + AT_rich Low_complexity Low_complexity 1 29 0 1933 165 0 3 chr9 96375616 96375913 -45895531 + AluSq SINE Alu 1 296 -17 1432 110 32 18 chr9 96375939 96376158 -45895286 + MER30 DNA MER1_type 8 229 -1 275 235 33 16 chr9 96376168 96376267 -45895177 + MIR3 SINE MIR 105 205 -3 326 304 182 52 chr9 96377843 96378172 -45893272 + L2 LINE L2 2942 3313 0 217 152 43 22 chr9 96378848 96378894 -45892550 - MIR SINE MIR -80 128 82 519 250 12 30 chr9 96380599 96380611 -45890833 + L2 LINE L2 3153 3164 -149 1599 161 22 77 chr9 96380611 96380728 -45890716 + AluJo SINE Alu 1 123 -189 1789 140 39 25 chr9 96380728 96381041 -45890403 + AluJo SINE Alu 1 312 0 1599 161 22 77 chr9 96381041 96381234 -45890210 + AluJo SINE Alu 123 294 -18 519 250 12 30 chr9 96381234 96381385 -45890059 + L2 LINE L2 3164 3313 0 237 299 90 22 chr9 96381536 96381670 -45889774 + MIR SINE MIR 49 191 -71 207 241 56 93 chr9 96382387 96382495 -45888949 + MIR3 SINE MIR 94 197 -11 201 364 0 0 chr9 96383050 96383127 -45888317 - MIR SINE MIR -6 256 180 213 39 0 0 chr9 96383898 96383924 -45887520 + (A)n Simple_repeat Simple_repeat 1 26 0 217 206 137 27 chr9 96384429 96384502 -45886942 + MIR3 SINE MIR 104 184 -24 288 203 25 13 chr9 96385354 96385433 -45886011 - MER116 DNA Mariner 0 80 1 200 301 194 0 chr9 96386283 96386376 -45885068 + MIR SINE MIR 31 141 -67 577 196 118 0 chr9 96386402 96386555 -45884889 - L1ME3A LINE L1 0 6170 6000 675 192 0 0 chr9 96386585 96386710 -45884734 + MLT1D LTR MaLR 381 505 0 245 225 28 42 chr9 96386718 96386789 -45884655 - MIR SINE MIR -181 81 12 231 373 56 20 chr9 96387315 96387567 -45883877 + MLT1L LTR MaLR 347 607 -8 532 250 45 59 chr9 96388700 96388920 -45882524 - Charlie8 DNA MER1_type -2032 385 169 357 24 0 0 chr9 96389075 96389117 -45882327 + (TG)n Simple_repeat Simple_repeat 2 43 0 310 268 10 10 chr9 96389153 96389250 -45882194 - Charlie8 DNA MER1_type -2233 184 88 810 193 33 0 chr9 96389293 96389443 -45882001 + MER5A DNA MER1_type 1 155 -34 397 171 45 11 chr9 96389461 96389549 -45881895 + MER53 DNA DNA 94 184 -5 818 285 31 0 chr9 96389584 96389827 -45881617 + MIR SINE MIR 12 261 -1 1914 88 39 8 chr9 96390988 96391291 -45880153 + AluSg SINE Alu 14 324 0 205 320 20 27 chr9 96392396 96392543 -45878901 + CT-rich Low_complexity Low_complexity 2 147 0 806 252 48 35 chr9 96393082 96393312 -45878132 + MIR SINE MIR 9 241 -21 186 235 0 0 chr9 96393283 96393317 -45878127 + L2 LINE L2 3217 3250 -22 * 1867 117 3 32 chr9 96393448 96393731 -45877713 - AluSg SINE Alu 0 310 36 566 118 0 0 chr9 96394559 96394635 -45876809 + AluS SINE Alu 2 77 -236 2034 68 20 0 chr9 96394635 96394887 -45876557 + AluSp SINE Alu 38 294 -19 686 296 125 21 chr9 96398785 96399065 -45872379 - L2 LINE L2 0 3313 3005 354 333 0 0 chr9 96399268 96399391 -45872053 - Charlie8 DNA MER1_type -2198 219 97 2247 86 4 0 chr9 96399542 96399841 -45871603 - AluSg SINE Alu 0 300 1 539 316 80 13 chr9 96400281 96400506 -45870938 + MIR SINE MIR 10 249 -13 1796 158 48 73 chr9 96401515 96401913 -45869531 - MLT1B LTR MaLR -2 388 1 190 206 0 0 chr9 96402278 96402312 -45869132 + L2 LINE L2 3276 3309 -4 807 313 223 15 chr9 96404432 96405491 -45865953 - L2 LINE L2 -371 2943 1665 225 327 10 0 chr9 96406358 96406459 -45864985 + L2 LINE L2 1988 2089 -1225 282 366 10 0 chr9 96406516 96406617 -45864827 - MIR SINE MIR -114 148 47 189 74 0 0 chr9 96406688 96406715 -45864729 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2413 119 0 0 chr9 96407028 96407338 -45864106 - AluSx SINE Alu -2 310 1 2568 61 0 10 chr9 96408289 96408602 -45862842 - AluY SINE Alu -1 310 1 185 0 40 0 chr9 96408814 96408839 -45862605 + (TCTCCC)n Simple_repeat Simple_repeat 4 29 0 1134 146 0 0 chr9 96408870 96409035 -45862409 - AluSg/x SINE Alu -11 299 135 2690 129 34 7 chr9 96409542 96409959 -45861485 + MSTA LTR MaLR 1 428 0 454 328 131 34 chr9 96410286 96410896 -45860548 + L2 LINE L2 2210 2878 -436 672 184 99 0 chr9 96410915 96411056 -45860388 - MLT1B LTR MaLR 0 390 236 4219 177 67 5 chr9 96411070 96411872 -45859572 - MER21B LTR ERV1 -11 852 1 864 182 44 44 chr9 96411896 96412121 -45859323 - MLT1B LTR MaLR -158 232 8 208 345 35 40 chr9 96412141 96412341 -45859103 + L2 LINE L2 2914 3112 -160 341 143 0 78 chr9 96412380 96412428 -45859016 + MER116 DNA Mariner 10 51 -29 2350 94 0 3 chr9 96412428 96412727 -45858717 - AluY SINE Alu -13 298 1 341 143 0 78 chr9 96412727 96412755 -45858689 + MER116 DNA Mariner 51 80 0 236 242 97 0 chr9 96412808 96412870 -45858574 + L2 LINE L2 3205 3272 0 2375 100 0 0 chr9 96413522 96413823 -45857621 + AluSg SINE Alu 1 301 -9 873 159 165 0 chr9 96414117 96414299 -45857145 + MER46B DNA MER2_type 1 87 -149 582 270 69 0 chr9 96414299 96414458 -45856986 + MER8 DNA MER2_type 10 179 -60 234 273 0 0 chr9 96414457 96414512 -45856932 + MER2 DNA MER2_type 290 344 -1 * 967 122 27 0 chr9 96414512 96414659 -45856785 + MER46B DNA MER2_type 85 235 -1 523 234 7 45 chr9 96414662 96414816 -45856628 + MIR SINE MIR 71 218 -44 1879 130 44 0 chr9 96414878 96415178 -45856266 + AluSx SINE Alu 1 312 0 1310 210 22 4 chr9 96417095 96417371 -45854073 + L1ME3A LINE L1 4108 4388 -1758 768 126 0 0 chr9 96417371 96417482 -45853962 + AluSg/x SINE Alu 195 305 -7 753 205 5 32 chr9 96417513 96417703 -45853741 + L1ME3A LINE L1 4984 5168 -978 1010 266 47 26 chr9 96417945 96418284 -45853160 + L1ME3A LINE L1 5822 6167 -3 303 289 120 19 chr9 96418709 96418946 -45852498 + MLT1L LTR MaLR 271 563 -5 358 258 127 50 chr9 96418955 96419176 -45852268 - MIR SINE MIR -2 260 23 308 278 26 52 chr9 96419178 96419293 -45852151 + MIR SINE MIR 30 141 -121 186 305 137 11 chr9 96420079 96420174 -45851270 + MIR SINE MIR 50 156 -106 394 246 32 32 chr9 96420357 96420483 -45850961 + L1MD3 LINE L1 7867 7992 -3 803 154 0 7 chr9 96422202 96422338 -45849106 + L1MB8 LINE L1 5834 5968 -216 809 179 0 0 chr9 96422338 96422472 -45848972 - AluJb SINE Alu -5 307 174 469 232 49 80 chr9 96422478 96422702 -45848742 + L1MB8 LINE L1 5962 6178 0 305 321 17 42 chr9 96422969 96423206 -45848238 - L1MC4a LINE L1 -1883 5925 5695 261 298 250 0 chr9 96424098 96424202 -45847242 - L3 LINE CR1 -2 1575 1446 353 337 22 6 chr9 96424246 96424424 -45847020 - L3 LINE CR1 -108 1469 1289 2645 52 0 0 chr9 96424747 96425056 -45846388 - AluY SINE Alu -2 309 1 1585 220 58 94 chr9 96425058 96425360 -45846084 + HAL1b LINE L1 547 859 -489 2360 81 7 3 chr9 96425360 96425657 -45845787 - AluSg SINE Alu -12 298 1 1585 220 58 94 chr9 96425657 96426171 -45845273 + HAL1b LINE L1 859 1333 -15 3883 201 41 18 chr9 96426188 96426459 -45844985 + L1MB3 LINE L1 4728 4991 -1192 2357 72 0 0 chr9 96426459 96426736 -45844708 + AluY SINE Alu 17 293 -18 3883 201 41 18 chr9 96426736 96427892 -45843552 + L1MB3 LINE L1 4991 6179 -4 1727 163 67 3 chr9 96427903 96428246 -45843198 + L1MB7 LINE L1 5812 6176 -8 507 159 23 0 chr9 96428281 96428369 -45843075 + AluS SINE Alu 2 91 -221 1195 249 73 36 chr9 96428484 96428950 -45842494 - HAL1b LINE L1 -792 556 74 2439 67 0 38 chr9 96430185 96430498 -45840946 - AluY SINE Alu -10 301 1 2398 79 0 3 chr9 96432090 96432393 -45839051 - AluSg SINE Alu -8 302 1 23 0 0 0 chr9 96432479 96432502 -45838942 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 96433944 96433981 -45837463 + AT_rich Low_complexity Low_complexity 1 37 0 385 209 9 48 chr9 96434133 96434238 -45837206 + MER53 DNA DNA 8 108 -81 332 264 0 11 chr9 96434406 96434497 -45836947 + L1MC5 LINE L1 7715 7804 -157 210 292 14 28 chr9 96435632 96435704 -45835740 + MIR SINE MIR 3 73 -189 2010 121 24 0 chr9 96435704 96435993 -45835451 - AluSx SINE Alu -12 300 5 951 71 0 0 chr9 96435995 96436108 -45835336 - AluSq/x SINE Alu -175 137 25 711 287 35 4 chr9 96436343 96436573 -45834871 - MIR SINE MIR -21 241 5 209 281 49 0 chr9 96436685 96436767 -45834677 + L3 LINE CR1 1416 1501 -76 2427 61 20 3 chr9 96436867 96437163 -45834281 - AluY SINE Alu -10 301 1 1065 229 27 0 chr9 96437631 96437889 -45833555 - L1MA4 LINE L1 -8 6292 6028 203 281 47 0 chr9 96439233 96439297 -45832147 - L2 LINE L2 -1 3312 3246 1965 142 3 7 chr9 96440195 96440497 -45830947 + AluJb SINE Alu 1 301 -11 350 304 78 47 chr9 96442382 96442495 -45828949 + MIR SINE MIR 51 175 -87 1628 164 29 25 chr9 96442495 96442812 -45828632 + AluJb SINE Alu 1 318 0 350 304 78 47 chr9 96442812 96442888 -45828556 + MIR SINE MIR 175 247 -15 470 305 85 5 chr9 96443919 96444142 -45827302 - L3b LINE CR1 -241 1342 1102 2111 131 3 16 chr9 96444194 96444506 -45826938 - AluJb SINE Alu -4 308 1 227 264 0 0 chr9 96445137 96445190 -45826254 + (CA)n Simple_repeat Simple_repeat 1 53 0 735 120 0 0 chr9 96450105 96450213 -45821231 - AluJb SINE Alu -9 303 196 2003 106 11 0 chr9 96450545 96450850 -45820594 - AluSg SINE Alu 0 320 13 1375 160 56 83 chr9 96451504 96451575 -45819869 + Charlie5 DNA MER1_type 4 75 -2549 2345 75 17 3 chr9 96451575 96451868 -45819576 - AluY SINE Alu -14 297 1 1375 160 56 83 chr9 96451868 96452287 -45819157 + Charlie5 DNA MER1_type 75 2624 0 2224 149 3 26 chr9 96453566 96453955 -45817489 - MLT1B LTR MaLR -3 387 8 198 281 22 45 chr9 96456287 96456376 -45815068 + MER5A DNA MER1_type 36 122 -67 1688 130 20 125 chr9 96456438 96456657 -45814787 - AluYb8 SINE Alu -2 316 146 2263 91 0 3 chr9 96456657 96456943 -45814501 - AluY SINE Alu -26 285 1 1688 130 20 125 chr9 96456943 96457076 -45814368 - AluYb8 SINE Alu -172 146 1 2361 90 3 0 chr9 96457151 96457450 -45813994 - AluSg SINE Alu -10 300 1 278 25 0 25 chr9 96458143 96458183 -45813261 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 2077 92 11 14 chr9 96458185 96458469 -45812975 - AluSx SINE Alu -29 283 1 286 260 42 10 chr9 96458961 96459057 -45812387 - MIR SINE MIR -62 146 48 2282 119 0 0 chr9 96460225 96460528 -45810916 + AluSq SINE Alu 1 303 -10 1824 159 0 3 chr9 96461588 96461878 -45809566 - AluJo SINE Alu -23 289 1 297 323 8 23 chr9 96462068 96462201 -45809243 - L2 LINE L2 -1 3312 3182 952 112 126 37 chr9 96462212 96462427 -45809017 + L1MC2 LINE L1 6086 6319 -25 191 301 73 41 chr9 96462569 96462692 -45808752 - L2 LINE L2 -553 2761 2635 249 159 0 0 chr9 96462942 96462986 -45808458 + (TG)n Simple_repeat Simple_repeat 1 44 0 314 286 164 52 chr9 96464557 96464984 -45806460 - L1M2 LINE L1 -5825 1024 550 2293 94 3 0 chr9 96466388 96466686 -45804758 - AluY SINE Alu -12 299 1 22 35 0 0 chr9 96468763 96468792 -45802652 + AT_rich Low_complexity Low_complexity 1 29 0 1978 80 76 24 chr9 96470698 96470987 -45800457 - AluY SINE Alu -7 304 1 1593 181 16 23 chr9 96471014 96471317 -45800127 + AluJo SINE Alu 2 302 -10 258 259 0 0 chr9 96471483 96471541 -45799903 - MIR SINE MIR -21 241 184 296 167 45 15 chr9 96472243 96472309 -45799135 + L2 LINE L2 3245 3312 -1 22 35 0 0 chr9 96472391 96472420 -45799024 + AT_rich Low_complexity Low_complexity 1 29 0 194 322 103 11 chr9 96472512 96472599 -45798845 + MIR SINE MIR 19 113 -95 21 0 0 0 chr9 96472643 96472664 -45798780 + AT_rich Low_complexity Low_complexity 1 21 0 372 292 144 35 chr9 96473100 96473439 -45798005 - HAL1b LINE L1 -696 652 277 218 301 53 44 chr9 96473441 96473554 -45797890 + MIR SINE MIR 99 212 -50 277 156 43 0 chr9 96473612 96473670 -45797774 + AluJb SINE Alu 86 135 -167 1649 175 10 26 chr9 96473672 96473980 -45797464 + AluJo SINE Alu 3 305 -7 1003 113 0 0 chr9 96475354 96475487 -45795957 - AluSq/x SINE Alu -180 133 1 2175 101 17 3 chr9 96475731 96476028 -45795416 - AluSx SINE Alu -11 301 1 1518 193 43 0 chr9 96476106 96476386 -45795058 - AluJo SINE Alu -20 292 1 46 19 0 0 chr9 96476463 96476516 -45794928 + AT_rich Low_complexity Low_complexity 1 53 0 1776 157 138 0 chr9 96476721 96477026 -45794418 - MER7A DNA MER2_type 0 346 2 243 122 24 0 chr9 96477222 96477263 -45794181 - MER3 DNA MER1_type -152 57 16 2488 204 34 9 chr9 96477263 96477823 -45793621 - L1ME1 LINE L1 -144 6022 5449 202 228 0 65 chr9 96478566 96478658 -45792786 + (CAG)n Simple_repeat Simple_repeat 1 86 0 374 261 146 8 chr9 96479516 96479646 -45791798 - MIR3 SINE MIR -19 189 42 22 35 0 0 chr9 96480091 96480120 -45791324 + AT_rich Low_complexity Low_complexity 1 29 0 2175 139 0 0 chr9 96480121 96480430 -45791014 + AluJb SINE Alu 1 309 -3 912 181 0 0 chr9 96480529 96480684 -45790760 - AluSg/x SINE Alu -14 298 144 2086 99 14 11 chr9 96482091 96482374 -45789070 - AluSc SINE Alu -25 284 1 265 321 45 18 chr9 96482715 96482827 -45788617 + MIR SINE MIR 27 141 -67 551 217 25 19 chr9 96484702 96484863 -45786581 - L1MA4 LINE L1 -1 6299 6138 2410 223 71 29 chr9 96485941 96486590 -45784854 - L1MB7 LINE L1 -9 6175 5500 1944 128 3 24 chr9 96486723 96487043 -45784401 + AluJo SINE Alu 5 318 0 1060 292 97 19 chr9 96488122 96488650 -45782794 + MER20B DNA MER1_type 135 703 -80 23 33 0 0 chr9 96493654 96493684 -45777760 + AT_rich Low_complexity Low_complexity 1 30 0 1929 61 36 4 chr9 96494719 96494966 -45776478 - L1PA6 LINE L1 -2 6152 5898 2550 64 3 10 chr9 96495247 96495560 -45775884 - AluSp SINE Alu -2 311 1 262 133 0 33 chr9 96496392 96496452 -45774992 + (TTC)n Simple_repeat Simple_repeat 2 59 0 1851 157 0 20 chr9 96499026 96499331 -45772113 + AluJb SINE Alu 1 299 -13 288 0 0 0 chr9 96499478 96499510 -45771934 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 315 0 0 0 chr9 96501188 96501223 -45770221 + (TG)n Simple_repeat Simple_repeat 1 35 0 1928 138 28 43 chr9 96501832 96502223 -45769221 + L1M2 LINE L1 4175 4559 -1587 2117 97 17 3 chr9 96502238 96502528 -45768916 + AluSx SINE Alu 1 294 -18 590 194 0 0 chr9 96502528 96502636 -45768808 + L1M2 LINE L1 5555 5662 -638 412 293 61 57 chr9 96502638 96502884 -45768560 - MIR SINE MIR -14 248 2 221 226 0 19 chr9 96503809 96503862 -45767582 - MER5A DNA MER1_type -137 52 1 9801 52 5 0 chr9 96504060 96505993 -45765451 - L1PA6 LINE L1 -1 6153 4215 283 204 0 0 chr9 96506504 96506553 -45764891 - L1ME LINE L1 -579 5583 5535 12103 198 48 36 chr9 96506644 96506856 -45764588 - L1MB2 LINE L1 -2 5993 5785 2302 116 0 0 chr9 96506856 96507167 -45764277 - AluSx SINE Alu -1 311 1 12103 198 48 36 chr9 96507167 96508593 -45762851 - L1MB2 LINE L1 -210 5785 4378 2167 123 3 0 chr9 96508593 96508901 -45762543 + AluSp SINE Alu 1 309 -4 12103 198 48 36 chr9 96508901 96511627 -45759817 - L1MB2 LINE L1 -1617 4378 1562 378 212 0 15 chr9 96511652 96511718 -45759726 - MER2 DNA MER2_type 0 345 281 * 673 296 52 12 chr9 96511691 96511863 -45759581 - MER8 DNA MER2_type -60 179 1 3632 229 35 35 chr9 96511874 96513065 -45758379 - L1MB2 LINE L1 -4516 1385 365 612 272 56 104 chr9 96513390 96513443 -45758001 - L1MB2 LINE L1 -5468 423 369 4575 167 16 30 chr9 96513443 96513566 -45757878 + MER44D DNA MER2_type 2 125 -2362 1876 156 7 0 chr9 96513566 96513854 -45757590 - AluSx SINE Alu -22 290 1 247 158 0 70 chr9 96513821 96513878 -45757566 - AluSp SINE Alu -135 168 116 4575 167 16 30 chr9 96513854 96514472 -45756972 + MER44D DNA MER2_type 125 605 0 612 272 56 104 chr9 96514472 96514859 -45756585 - L1MB2 LINE L1 -5522 369 1 302 296 42 21 chr9 96514869 96515011 -45756433 - L1M4 LINE L1 -756 5390 5246 306 229 0 0 chr9 96515280 96515350 -45756094 - L1M4 LINE L1 -1060 5086 5017 396 0 0 0 chr9 96515663 96515707 -45755737 + (TG)n Simple_repeat Simple_repeat 2 45 0 659 107 19 19 chr9 96517523 96517626 -45753818 - U13 snRNA snRNA -1 103 1 327 266 92 76 chr9 96517647 96517831 -45753613 + L1ME4a LINE L1 4865 5051 -1095 300 263 95 0 chr9 96518053 96518148 -45753296 + L1ME4a LINE L1 5326 5429 -2379 244 301 187 12 chr9 96518262 96518428 -45753016 + MER91A DNA MER1_type 2 196 0 263 251 176 63 chr9 96518428 96518661 -45752783 + L1ME4a LINE L1 5561 5766 -355 1627 152 79 11 chr9 96518661 96518938 -45752506 + AluJb SINE Alu 1 296 -16 263 251 176 63 chr9 96518938 96519085 -45752359 + L1ME4a LINE L1 5766 5994 -127 1387 153 55 109 chr9 96519085 96519470 -45751974 - MLT1A1 LTR MaLR 0 365 2 263 251 176 63 chr9 96519470 96519503 -45751941 + L1ME4a LINE L1 5994 6022 -99 27 29 0 0 chr9 96519542 96519576 -45751868 + AT_rich Low_complexity Low_complexity 1 34 0 533 258 71 13 chr9 96521065 96521220 -45750224 - MIR SINE MIR -10 252 89 217 228 0 70 chr9 96521579 96521636 -45749808 - MIR SINE MIR -2 260 208 3673 144 70 8 chr9 96522078 96522738 -45748706 - Tigger3b DNA MER2_type 0 1232 532 1135 80 74 12 chr9 96523018 96523181 -45748263 - MER30 DNA MER1_type -57 173 1 235 264 91 66 chr9 96524278 96524399 -45747045 + MER5A DNA MER1_type 56 179 -10 2040 121 0 0 chr9 96524402 96524674 -45746770 - AluSx SINE Alu -40 272 1 304 224 119 30 chr9 96524786 96524920 -45746524 + L1MC5 LINE L1 7772 7917 -44 351 256 51 17 chr9 96525030 96525147 -45746297 + L1ME3A LINE L1 6048 6168 -2 3101 150 24 31 chr9 96525147 96525367 -45746077 - Tigger3b DNA MER2_type -2479 549 329 1364 177 70 43 chr9 96525367 96525666 -45745778 - AluJo SINE Alu -5 307 1 3101 150 24 31 chr9 96525666 96525997 -45745447 - Tigger3b DNA MER2_type -2699 329 2 416 192 13 13 chr9 96526061 96526139 -45745305 - Tigger7 DNA MER2_type -2 2485 2408 180 111 0 0 chr9 96526159 96526186 -45745258 + (CA)n Simple_repeat Simple_repeat 2 28 0 321 26 0 0 chr9 96526187 96526225 -45745219 + (TG)n Simple_repeat Simple_repeat 1 38 0 277 223 11 75 chr9 96526550 96526644 -45744800 - MIR3 SINE MIR -1 207 120 2599 58 0 7 chr9 96527270 96527579 -45743865 + AluY SINE Alu 1 307 -4 420 212 95 95 chr9 96527852 96528255 -45743189 - MLT1D LTR MaLR -2 503 51 947 197 27 0 chr9 96528281 96528469 -45742975 - MER20 DNA MER1_type -26 193 1 1981 57 8 0 chr9 96529322 96529566 -45741878 + LTR5 LTR ERVK 1 246 -723 1432 54 0 0 chr9 96529566 96529734 -45741710 + LTR5 LTR ERVK 799 966 -3 675 249 31 16 chr9 96531120 96531313 -45740131 - ERVL LTR ERVL -1194 4570 4375 202 321 72 90 chr9 96533455 96533732 -45737712 + L2 LINE L2 2987 3258 -14 21 57 0 0 chr9 96534666 96534701 -45736743 + AT_rich Low_complexity Low_complexity 1 35 0 231 293 0 0 chr9 96535200 96535258 -45736186 - L2 LINE L2 0 3313 3256 257 208 42 28 chr9 96535300 96535372 -45736072 - MLT1L LTR MaLR 0 615 543 1164 201 34 4 chr9 96535693 96535927 -45735517 + Charlie1 DNA MER1_type 2 242 -2519 297 164 0 0 chr9 96535946 96536019 -45735425 + (TA)n Simple_repeat Simple_repeat 1 73 0 371 198 49 0 chr9 96536032 96536113 -45735331 + Charlie1 DNA MER1_type 2670 2754 -7 393 190 95 58 chr9 96536129 96536266 -45735178 - MLT1L LTR MaLR -469 146 5 3372 191 69 3 chr9 96536391 96537102 -45734342 - L1MB3 LINE L1 -1 6182 5425 32996 101 15 56 chr9 96538809 96545225 -45726219 - L1PA7 LINE L1 0 6154 12 1925 125 0 59 chr9 96545429 96545750 -45725694 + MER1B DNA MER1_type 1 302 -37 652 113 10 0 chr9 96545751 96545848 -45725596 + L1PB1 LINE L1 6053 6150 -1 451 133 27 0 chr9 96545859 96545934 -45725510 + L1MCa LINE L1 1296 1372 -5054 639 134 84 25 chr9 96545939 96546058 -45725386 + L1MCa LINE L1 1473 1598 -4828 1474 156 19 62 chr9 96546436 96546744 -45724700 - AluJo SINE Alu -17 295 1 2436 67 7 3 chr9 96546748 96547047 -45724397 - AluY SINE Alu -11 300 1 2205 104 13 3 chr9 96547207 96547516 -45723928 - AluSx SINE Alu 0 312 1 274 206 27 110 chr9 96547532 96547605 -45723839 + MIR SINE MIR 18 84 -178 2363 67 0 0 chr9 96548283 96548621 -45722823 + AluY SINE Alu 1 338 0 1522 177 91 48 chr9 96548705 96549124 -45722320 - MLT1D LTR MaLR 0 505 69 727 162 0 70 chr9 96549244 96549386 -45722058 + FLAM_C SINE Alu 2 133 -10 298 167 44 67 chr9 96549471 96549561 -45721883 - L1MC4 LINE L1 -1340 6702 6615 21 0 0 0 chr9 96549796 96549817 -45721627 + AT_rich Low_complexity Low_complexity 1 21 0 1368 168 30 4 chr9 96549910 96550165 -45721279 - AluJb SINE Alu 0 306 46 215 304 43 43 chr9 96550209 96550324 -45721120 + MIR SINE MIR 97 211 -51 192 77 0 0 chr9 96554683 96554709 -45716735 + (CGGGG)n Simple_repeat Simple_repeat 5 30 0 2431 81 0 3 chr9 96557342 96557640 -45713804 - AluSc SINE Alu -12 297 1 2488 68 0 0 chr9 96557959 96558255 -45713189 - AluY SINE Alu -15 296 1 264 226 68 73 chr9 96559550 96559727 -45711717 - L1MC4 LINE L1 -1858 5950 5775 1415 201 22 4 chr9 96559960 96560259 -45711185 - AluJo SINE Alu 0 312 9 684 213 97 9 chr9 96567730 96567946 -45703498 + MER33 DNA MER1_type 1 235 -89 2185 92 14 3 chr9 96570547 96570841 -45700603 - AluSg1 SINE Alu -12 297 1 4177 174 74 10 chr9 96573925 96574994 -45696450 - L1MB8 LINE L1 -1 6177 5016 218 325 17 88 chr9 96575170 96575410 -45696034 + L2 LINE L2 2995 3217 -55 216 321 18 0 chr9 96576832 96576888 -45694556 - L2 LINE L2 -3 3310 3254 770 182 28 111 chr9 96577362 96577615 -45693829 - MER46A DNA MER2_type 0 236 5 21 36 0 0 chr9 96577722 96577750 -45693694 + AT_rich Low_complexity Low_complexity 1 28 0 269 284 62 0 chr9 96578231 96578312 -45693132 - MER63A DNA MER1_type -7 203 118 408 258 25 42 chr9 96578389 96578509 -45692935 + MER58A DNA MER1_type 1 118 0 241 309 0 0 chr9 96578509 96578569 -45692875 + MER58A DNA MER1_type 164 223 -1 1257 176 112 12 chr9 96578641 96578891 -45692553 + AluJo SINE Alu 14 288 -24 229 218 0 18 chr9 96579660 96579715 -45691729 - MER112 DNA MER1_type -39 221 168 226 29 29 0 chr9 96579720 96579755 -45691689 + AluY SINE Alu 1 36 -265 275 83 0 0 chr9 96579791 96579827 -45691617 + Alu SINE Alu 1 36 -267 2332 104 3 7 chr9 96579827 96580136 -45691308 + AluSx SINE Alu 1 308 -4 323 302 95 24 chr9 96581722 96581848 -45689596 + L1ME3A LINE L1 5254 5388 -2420 1401 182 60 26 chr9 96581853 96582142 -45689302 + AluJb SINE Alu 4 301 0 408 234 138 21 chr9 96582209 96582397 -45689047 + LTR33 LTR ERVL 263 472 -49 386 309 147 0 chr9 96582416 96582607 -45688837 + L1ME3A LINE L1 5438 5656 -2152 2185 90 35 0 chr9 96586504 96586792 -45684652 + AluSg SINE Alu 7 304 -6 418 138 50 61 chr9 96589501 96589754 -45681690 + (CACAG)n Simple_repeat Simple_repeat 1 250 0 375 152 82 35 chr9 96589770 96589941 -45681503 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 2544 75 3 0 chr9 96593455 96593762 -45677682 + AluY SINE Alu 1 308 -3 2267 105 16 0 chr9 96594455 96594760 -45676684 - AluSq SINE Alu -2 311 2 180 0 0 0 chr9 96594760 96594780 -45676664 + (TC)n Simple_repeat Simple_repeat 2 21 0 234 0 0 0 chr9 96598309 96598335 -45673109 + (TG)n Simple_repeat Simple_repeat 1 26 0 297 310 0 0 chr9 96600096 96600183 -45671261 + MIR SINE MIR 52 138 -124 265 305 21 21 chr9 96600272 96600367 -45671077 + CT-rich Low_complexity Low_complexity 3 97 0 1396 286 44 22 chr9 96600574 96600920 -45670524 - L1MB3 LINE L1 -4 6179 5815 2159 86 8 0 chr9 96600920 96601188 -45670256 - AluSg SINE Alu -13 297 28 1396 286 44 22 chr9 96601188 96601390 -45670054 - L1MB3 LINE L1 -368 5815 5619 252 336 58 4 chr9 96602573 96602814 -45668630 - L2 LINE L2 -808 2506 2253 715 182 77 0 chr9 96603217 96603387 -45668057 + MER20 DNA MER1_type 35 217 -2 234 277 12 12 chr9 96603846 96603929 -45667515 + LTR67 LTR ERVL 471 553 -4 679 221 19 62 chr9 96605205 96605413 -45666031 - MER69 DNA AcHobo -3 2523 2325 1856 174 3 0 chr9 96606894 96607182 -45664262 - AluSx SINE Alu -23 289 1 630 222 72 0 chr9 96611098 96611265 -45660179 - L1MA8 LINE L1 -279 6012 5834 387 200 223 0 chr9 96611558 96611688 -45659756 + L1ME3A LINE L1 6003 6161 -9 2219 239 41 10 chr9 96611759 96612810 -45658634 - L1MB4 LINE L1 0 6174 5061 373 325 38 6 chr9 96613017 96613177 -45658267 + MIR3 SINE MIR 19 183 -25 268 290 0 0 chr9 96613992 96614061 -45657383 + (CA)n Simple_repeat Simple_repeat 2 70 0 960 264 104 51 chr9 96614898 96615162 -45656282 - L1ME4a LINE L1 0 6121 5872 1826 156 10 30 chr9 96615162 96615464 -45655980 - AluJb SINE Alu -16 296 1 960 264 104 51 chr9 96615464 96615688 -45655756 - L1ME4a LINE L1 -249 5872 5607 1357 178 56 52 chr9 96619764 96619879 -45651565 + AluJo SINE Alu 1 114 -198 2496 61 7 0 chr9 96619879 96620174 -45651270 - AluY SINE Alu -14 297 1 1357 178 56 52 chr9 96620174 96620345 -45651099 + AluJo SINE Alu 114 288 -24 1805 158 11 7 chr9 96621209 96621494 -45649950 - AluJb SINE Alu -26 286 1 189 333 0 0 chr9 96623431 96623488 -45647956 - MIR3 SINE MIR -24 184 128 2259 78 20 3 chr9 96623976 96624271 -45647173 - AluSp SINE Alu -13 300 1 2153 131 0 0 chr9 96624273 96624571 -45646873 - AluSx SINE Alu -14 298 1 3068 221 72 40 chr9 96624671 96625605 -45645839 - L1ME2 LINE L1 0 6233 5331 2339 113 0 6 chr9 96625605 96625916 -45645528 - AluSc SINE Alu 0 309 1 3068 221 72 40 chr9 96625916 96625969 -45645475 - L1ME2 LINE L1 -902 5331 5281 1877 156 3 3 chr9 96625969 96626264 -45645180 - AluJb SINE Alu -17 295 1 3068 221 72 40 chr9 96626264 96626662 -45644782 - L1ME2 LINE L1 -952 5281 4816 1950 119 6 48 chr9 96626669 96626980 -45644464 - AluJo SINE Alu -14 298 1 265 199 26 73 chr9 96626990 96627141 -45644303 - L1ME2 LINE L1 -4079 2317 2174 363 184 31 61 chr9 96627302 96627400 -45644044 - L1ME2 LINE L1 -5926 279 185 484 270 184 33 chr9 96627638 96628030 -45643414 + L1ME2 LINE L1 5501 5951 -213 2530 64 0 3 chr9 96628111 96628409 -45643035 - AluY SINE Alu -13 298 2 1767 167 7 13 chr9 96629272 96629578 -45641866 + AluJo SINE Alu 1 304 -8 976 139 0 0 chr9 96629610 96629747 -45641697 + AluJb SINE Alu 1 137 -175 1098 184 0 5 chr9 96630192 96630382 -45641062 + AluJb SINE Alu 120 308 -4 182 37 37 0 chr9 96631900 96631927 -45639517 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 648 197 171 4 chr9 96633605 96633844 -45637600 - MER1B DNA MER1_type -4 335 57 1777 97 9 0 chr9 96635162 96635389 -45636055 - AluSc SINE Alu -16 293 65 216 0 0 0 chr9 96636552 96636576 -45634868 + (GA)n Simple_repeat Simple_repeat 1 24 0 472 269 204 0 chr9 96642144 96642311 -45629133 + MIR SINE MIR 47 247 -15 1652 136 70 42 chr9 96642361 96642647 -45628797 + AluJo SINE Alu 1 294 -18 1557 176 15 4 chr9 96642761 96643023 -45628421 - AluJo SINE Alu -34 278 14 332 354 31 5 chr9 96643790 96643982 -45627462 - L2 LINE L2 -890 2424 2228 202 244 24 37 chr9 96644345 96644427 -45627017 - MIR SINE MIR -74 188 108 312 48 0 0 chr9 96646074 96646116 -45625328 + (TA)n Simple_repeat Simple_repeat 2 43 0 225 0 0 0 chr9 96646729 96646754 -45624690 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2071 151 0 6 chr9 96647280 96647592 -45623852 + AluJb SINE Alu 1 310 -2 2506 94 0 0 chr9 96648238 96648545 -45622899 - AluSq SINE Alu -6 307 1 769 183 0 0 chr9 96648553 96648679 -45622765 - FLAM_A SINE Alu -5 128 3 416 168 274 0 chr9 96648699 96648794 -45622650 - 5S rRNA rRNA 0 121 1 190 313 0 38 chr9 96648795 96648875 -45622569 - MIR SINE MIR -8 254 178 2396 210 129 66 chr9 96649087 96649849 -45621595 - MER21B LTR ERV1 -52 811 2 478 158 77 135 chr9 96652120 96652380 -45619064 + L1MC5 LINE L1 7456 7700 -261 2018 159 0 3 chr9 96652457 96652765 -45618679 + AluJb SINE Alu 1 307 -5 1829 159 34 163 chr9 96653103 96653493 -45617951 + Charlie1 DNA MER1_type 373 646 -2115 2318 72 7 0 chr9 96653493 96653792 -45617652 + AluSp SINE Alu 6 306 0 1829 159 34 163 chr9 96653792 96654055 -45617389 + Charlie1 DNA MER1_type 646 942 -1819 * 6031 198 59 41 chr9 96654027 96655492 -45615952 + Charlie1 DNA MER1_type 1175 2612 -149 1482 93 28 0 chr9 96655492 96655706 -45615738 + L1PA14 LINE L1 5942 6161 0 6031 198 59 41 chr9 96655706 96655735 -45615709 + Charlie1 DNA MER1_type 2612 2639 -122 2364 98 0 0 chr9 96655735 96656031 -45615413 - AluSx SINE Alu -16 296 1 6031 198 59 41 chr9 96656031 96656094 -45615350 + Charlie1 DNA MER1_type 2639 2761 0 793 271 201 13 chr9 96656585 96657162 -45614282 + L2 LINE L2 2336 3063 -250 796 243 0 11 chr9 96657178 96657355 -45614089 - MER3 DNA MER1_type -28 181 7 402 327 5 23 chr9 96657373 96657587 -45613857 + L2 LINE L2 3102 3311 -2 1778 165 7 7 chr9 96657898 96658207 -45613237 + AluJb SINE Alu 1 309 -3 216 319 43 0 chr9 96658430 96658524 -45612920 - L2 LINE L2 0 3313 3216 386 289 139 0 chr9 96658608 96658781 -45612663 - L2 LINE L2 -274 3039 2843 5173 111 71 17 chr9 96658897 96659090 -45612354 - L1PB3 LINE L1 -2 6152 5971 1294 135 74 5 chr9 96659090 96659305 -45612139 + MER30 DNA MER1_type 1 230 0 5173 111 71 17 chr9 96659305 96660034 -45611410 - L1PB3 LINE L1 -183 5971 5185 2429 101 0 0 chr9 96660216 96660524 -45610920 + AluSx SINE Alu 1 308 -4 1837 169 7 3 chr9 96661177 96661473 -45609971 + AluJb SINE Alu 2 298 -14 696 169 0 0 chr9 96661494 96661624 -45609820 + G-rich Low_complexity Low_complexity 4 133 0 1899 146 0 26 chr9 96661965 96662273 -45609171 - AluJb SINE Alu -7 305 6 217 226 0 19 chr9 96665035 96665088 -45606356 - MER5A DNA MER1_type -137 52 1 9154 52 5 0 chr9 96665286 96667219 -45604225 - L1PA6 LINE L1 -1 6153 4215 259 204 0 0 chr9 96667730 96667779 -45603665 - L1ME LINE L1 -579 5583 5535 10711 199 48 35 chr9 96667870 96668082 -45603362 - L1MB2 LINE L1 -2 6405 6197 2315 115 0 0 chr9 96668082 96668394 -45603050 - AluSx SINE Alu 0 312 1 10711 199 48 35 chr9 96668394 96669820 -45601624 - L1MB2 LINE L1 -210 6197 4790 2184 120 3 0 chr9 96669820 96670128 -45601316 + AluSp SINE Alu 1 309 -4 10711 199 48 35 chr9 96670128 96672854 -45598590 - L1MB2 LINE L1 -1617 4790 1974 352 212 0 15 chr9 96672879 96672945 -45598499 - MER2 DNA MER2_type 0 345 281 * 614 296 52 12 chr9 96672918 96673090 -45598354 - MER8 DNA MER2_type -60 179 1 3225 228 30 35 chr9 96673112 96674292 -45597152 - L1MB2 LINE L1 -4516 1797 799 493 291 47 67 chr9 96674634 96674670 -45596774 - L1M3de LINE L1 -5213 678 643 4237 167 16 30 chr9 96674670 96674793 -45596651 + MER44D DNA MER2_type 2 125 -2362 1887 156 7 0 chr9 96674793 96675081 -45596363 - AluSx SINE Alu -22 290 1 4237 167 16 30 chr9 96675081 96675699 -45595745 + MER44D DNA MER2_type 125 605 0 493 291 47 67 chr9 96675699 96676086 -45595358 - L1M3de LINE L1 -5248 643 1 311 296 42 21 chr9 96676096 96676238 -45595206 - L1M4 LINE L1 -756 5390 5246 269 212 0 0 chr9 96676507 96676573 -45594871 - L1M4 LINE L1 -1060 5086 5021 378 0 0 0 chr9 96676890 96676932 -45594512 + (TG)n Simple_repeat Simple_repeat 2 43 0 609 107 19 19 chr9 96678748 96678851 -45592593 - U13 snRNA snRNA -1 103 1 333 250 92 76 chr9 96678872 96679056 -45592388 + L1 LINE L1 4865 5051 -1095 307 274 130 48 chr9 96679278 96679486 -45591958 + L1ME4a LINE L1 5326 5550 -2258 235 301 187 12 chr9 96679487 96679653 -45591791 + MER91A DNA MER1_type 2 196 0 522 263 169 55 chr9 96679653 96679886 -45591558 + L1ME4a LINE L1 5561 5766 -355 1637 152 79 11 chr9 96679886 96680163 -45591281 + AluJb SINE Alu 1 296 -16 522 263 169 55 chr9 96680163 96680310 -45591134 + L1ME4a LINE L1 5766 5994 -127 1273 155 60 117 chr9 96680310 96680696 -45590748 - MLT1A1 LTR MaLR 0 365 2 522 263 169 55 chr9 96680696 96680729 -45590715 + L1ME4a LINE L1 5994 6022 -99 27 29 0 0 chr9 96680768 96680802 -45590642 + AT_rich Low_complexity Low_complexity 1 34 0 535 258 71 13 chr9 96682290 96682445 -45588999 - MIR SINE MIR -10 252 89 219 228 0 70 chr9 96682804 96682861 -45588583 - MIR SINE MIR -2 260 208 3321 146 70 8 chr9 96683303 96683963 -45587481 - Tigger3b DNA MER2_type 0 1231 531 1049 80 74 12 chr9 96684243 96684406 -45587038 - MER30 DNA MER1_type -57 173 1 251 264 91 66 chr9 96685503 96685624 -45585820 + MER5A DNA MER1_type 56 179 -10 2041 121 0 0 chr9 96685627 96685899 -45585545 - AluSx SINE Alu -40 272 1 243 224 119 30 chr9 96686011 96686145 -45585299 + L1MC5 LINE L1 7772 7917 -44 315 272 0 19 chr9 96686269 96686372 -45585072 + L1ME3A LINE L1 6068 6168 -2 2866 147 24 31 chr9 96686372 96686592 -45584852 - Tigger3b DNA MER2_type -2479 549 329 1401 177 70 43 chr9 96686592 96686891 -45584553 - AluJo SINE Alu -5 307 1 2866 147 24 31 chr9 96686891 96687222 -45584222 - Tigger3b DNA MER2_type -2699 329 2 388 192 13 13 chr9 96687286 96687364 -45584080 - Tigger7 DNA MER2_type -2 2585 2508 180 111 0 0 chr9 96687384 96687411 -45584033 + (CA)n Simple_repeat Simple_repeat 2 28 0 285 29 0 0 chr9 96687412 96687446 -45583998 + (TG)n Simple_repeat Simple_repeat 1 34 0 282 223 11 75 chr9 96687771 96687865 -45583579 - MIR3 SINE MIR -1 207 120 2354 79 0 0 chr9 96688491 96688781 -45582663 + AluY SINE Alu 1 290 -21 183 217 43 72 chr9 96688805 96688874 -45582570 - L2 LINE L2 0 3272 3206 32 75 0 0 chr9 96690373 96690440 -45581004 + AT_rich Low_complexity Low_complexity 1 67 0 442 192 0 29 chr9 96692264 96692368 -45579076 - FLAM_A SINE Alu -7 135 35 193 132 0 26 chr9 96692373 96692411 -45579033 - MER5A DNA MER1_type -98 91 55 546 202 163 6 chr9 96692526 96692704 -45578740 - MER20 DNA MER1_type -5 214 9 2072 92 67 0 chr9 96693043 96693325 -45578119 - AluSx SINE Alu -11 301 1 232 238 74 74 chr9 96693795 96693917 -45577527 + MER5A DNA MER1_type 66 187 -2 211 253 110 24 chr9 96694166 96694312 -45577132 + MIR SINE MIR 31 256 -6 1331 305 78 45 chr9 96695983 96696789 -45574655 + L2 LINE L2 1042 1874 -1440 243 283 0 0 chr9 96697085 96697145 -45574299 + L2 LINE L2 2175 2234 -1080 230 227 10 103 chr9 96697435 96697532 -45573912 + LTR52 LTR ERVL 70 157 -264 261 0 0 0 chr9 96697532 96697561 -45573883 + (CAGCC)n Simple_repeat Simple_repeat 3 31 0 932 166 49 0 chr9 96697580 96697743 -45573701 - AluJb SINE Alu -5 307 137 739 305 50 48 chr9 96697755 96698230 -45573214 + L2 LINE L2 2216 2691 -623 226 290 150 12 chr9 96698658 96698781 -45572663 + MIR SINE MIR 30 171 -62 311 294 217 34 chr9 96699254 96699688 -45571756 - L2 LINE L2 -17 3296 2785 276 54 0 0 chr9 96699911 96699948 -45571496 - MADE1 DNA Mariner -2 78 42 278 330 126 0 chr9 96700278 96700381 -45571063 + MER5B DNA MER1_type 63 178 0 278 257 30 0 chr9 96700444 96700545 -45570899 - L1MDa LINE L1 -4507 1708 1605 228 250 18 0 chr9 96700576 96700632 -45570812 - L1MDa LINE L1 -4827 1569 1513 3735 224 67 37 chr9 96700708 96701170 -45570274 - L1MC/D LINE L1 -743 5403 4957 2479 76 0 0 chr9 96701170 96701474 -45569970 + AluSc SINE Alu 1 304 -5 3735 224 67 37 chr9 96701474 96702661 -45568783 - L1MC/D LINE L1 -1189 4957 3841 1736 190 0 7 chr9 96703507 96703802 -45567642 + AluJo SINE Alu 1 293 -19 1034 267 121 28 chr9 96704599 96705005 -45566439 + MER20B DNA MER1_type 180 651 -132 1478 168 55 25 chr9 96705005 96705279 -45566165 - AluJo SINE Alu -30 282 1 1034 267 121 28 chr9 96705279 96705418 -45566026 + MER20B DNA MER1_type 651 776 -7 183 221 118 44 chr9 96705846 96705914 -45565530 + L2 LINE L2 3236 3308 -5 27 49 0 0 chr9 96706248 96706289 -45565155 + AT_rich Low_complexity Low_complexity 1 41 0 566 317 41 25 chr9 96706443 96706686 -45564758 + MIR SINE MIR 12 258 -4 385 261 131 51 chr9 96706764 96706940 -45564504 + MIR SINE MIR 13 202 -60 22 0 0 0 chr9 96707452 96707474 -45563970 + AT_rich Low_complexity Low_complexity 1 22 0 1678 119 94 45 chr9 96709363 96709649 -45561795 + AluJo SINE Alu 1 300 -12 1317 168 79 28 chr9 96709826 96710241 -45561203 - Charlie1 DNA MER1_type -57 2704 2 23 0 0 0 chr9 96714150 96714173 -45557271 + AT_rich Low_complexity Low_complexity 1 23 0 2469 87 3 0 chr9 96714337 96714649 -45556795 - AluSp SINE Alu 0 313 1 5455 156 49 21 chr9 96714703 96715812 -45555632 + L1MC1 LINE L1 5174 6327 -6 475 310 94 5 chr9 96715873 96716086 -45555358 + L2 LINE L2 2398 2629 -685 329 280 30 10 chr9 96716146 96716246 -45555198 + L1ME3A LINE L1 5638 5739 -431 308 275 49 21 chr9 96716266 96716408 -45555036 + L1ME3A LINE L1 5817 5962 -208 28 0 0 0 chr9 96716577 96716605 -45554839 + AT_rich Low_complexity Low_complexity 1 28 0 641 211 49 85 chr9 96716718 96716964 -45554480 - MIR SINE MIR -1 261 25 2542 274 118 57 chr9 96717319 96719191 -45552253 + L1ME1 LINE L1 75 2074 -4322 1302 203 62 3 chr9 96719191 96719497 -45551947 + MER33 DNA MER1_type 1 324 0 2542 274 118 57 chr9 96719497 96719587 -45551857 + L1ME1 LINE L1 2074 2157 -4239 * 2945 206 32 12 chr9 96719580 96720397 -45551047 + L1MB3 LINE L1 4662 5490 -693 1638 188 3 17 chr9 96720398 96720690 -45550754 + AluJo SINE Alu 1 288 -24 3277 150 47 5 chr9 96720704 96721263 -45550181 + L1MB3 LINE L1 5593 6174 -9 195 204 0 0 chr9 96721608 96721657 -45549787 + GA-rich Low_complexity Low_complexity 1 49 0 225 114 0 0 chr9 96721679 96721723 -45549721 + L1ME1 LINE L1 2178 2221 -4175 1121 260 83 21 chr9 96721728 96722228 -45549216 + MLT1G1 LTR MaLR 1 578 -12 4450 228 101 26 chr9 96722241 96722722 -45548722 + L1ME1 LINE L1 2184 2627 -3588 2000 243 75 16 chr9 96722722 96723212 -45548232 + LTR40a LTR ERVL 1 519 0 4450 228 101 26 chr9 96723212 96723456 -45547988 + L1ME1 LINE L1 2627 2851 -3364 2215 97 10 0 chr9 96723456 96723755 -45547689 + AluY SINE Alu 1 302 -9 4450 228 101 26 chr9 96723755 96724435 -45547009 + L1ME1 LINE L1 2851 3742 -2473 1760 177 3 0 chr9 96724435 96724723 -45546721 + AluJo SINE Alu 1 289 -23 4450 228 101 26 chr9 96724723 96725012 -45546432 + L1ME1 LINE L1 3742 4008 -2207 289 280 57 51 chr9 96725022 96725197 -45546247 + L1M3e LINE L1 -723 4294966748 -6854 518 211 35 93 chr9 96725657 96725843 -45545601 + L1M3e LINE L1 777 972 -5334 7766 46 0 1 chr9 96725843 96727126 -45544318 + L1PA6 LINE L1 4866 6147 -7 198 0 0 0 chr9 96727130 96727152 -45544292 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 518 211 35 93 chr9 96727152 96727201 -45544243 + L1M3e LINE L1 975 1298 -5008 1983 78 89 11 chr9 96727202 96727484 -45543960 + AluSc SINE Alu 1 304 -5 3310 212 65 50 chr9 96727565 96728301 -45543143 + L1ME1 LINE L1 5027 5765 -470 746 227 0 0 chr9 96728301 96728433 -45543011 + FLAM_A SINE Alu 2 133 0 3310 212 65 50 chr9 96728433 96728906 -45542538 + L1ME1 LINE L1 5765 6230 -5 243 328 30 37 chr9 96729164 96729298 -45542146 - L1ME LINE L1 -307 5814 5682 2662 157 49 0 chr9 96729394 96729839 -45541605 - MLT1C LTR MaLR 0 467 1 2322 102 0 6 chr9 96729947 96730262 -45541182 + AluSp SINE Alu 1 313 0 203 271 106 24 chr9 96730627 96730712 -45540732 + MIR SINE MIR 122 213 -49 968 157 84 6 chr9 96730766 96730970 -45540474 - L1MB2 LINE L1 -85 6086 5894 234 261 185 0 chr9 96730988 96731053 -45540391 - MIR SINE MIR -151 111 35 185 94 31 0 chr9 96731989 96732021 -45539423 + A-rich Low_complexity Low_complexity 3 35 0 995 275 60 3 chr9 96733088 96733386 -45538058 + LTR16A LTR ERVL 136 450 0 218 224 155 0 chr9 96734367 96734425 -45537019 + L2 LINE L2 3245 3311 -2 1617 288 153 17 chr9 96734746 96735268 -45536176 - L2 LINE L2 -1 3312 2862 2348 112 0 0 chr9 96735268 96735571 -45535873 + AluSx SINE Alu 1 303 -9 1617 288 153 17 chr9 96735571 96736004 -45535440 - L2 LINE L2 -451 2862 2224 333 68 0 0 chr9 96736014 96736058 -45535386 + (CA)n Simple_repeat Simple_repeat 1 44 0 26 0 0 0 chr9 96736168 96736194 -45535250 + AT_rich Low_complexity Low_complexity 1 26 0 4301 67 313 6 chr9 96736690 96737322 -45534122 - LTR12 LTR ERV1 0 826 1 2082 122 52 9 chr9 96737588 96737917 -45533527 + MER61A LTR ERV1 1 343 0 2664 97 58 71 chr9 96738168 96738602 -45532842 - MSTA LTR MaLR 0 428 1 435 315 62 28 chr9 96738985 96739306 -45532138 - MLT1K LTR MaLR -122 466 135 1342 259 151 10 chr9 96739977 96740499 -45530945 + Charlie7 DNA MER1_type 12 607 -2005 448 276 61 48 chr9 96740652 96740883 -45530561 + L1M4 LINE L1 4558 4796 -1350 1148 235 118 46 chr9 96740883 96741364 -45530080 - MLT2B1 LTR ERVL 0 520 5 448 276 61 48 chr9 96741364 96741462 -45529982 + L1M4 LINE L1 4796 4891 -1255 444 269 60 30 chr9 96741612 96741813 -45529631 + L1M4 LINE L1 4901 5107 -1039 2381 101 3 0 chr9 96741815 96742123 -45529321 + AluSp SINE Alu 1 309 -4 228 254 93 51 chr9 96742128 96742246 -45529198 + L1ME3A LINE L1 6007 6129 -41 378 222 50 20 chr9 96742527 96742626 -45528818 + L2 LINE L2 3208 3309 -4 251 210 65 0 chr9 96742998 96743060 -45528384 + L2 LINE L2 3244 3309 -4 469 240 47 8 chr9 96743763 96743892 -45527552 + MER3 DNA MER1_type 37 123 -86 1577 191 44 36 chr9 96743894 96744281 -45527163 + MER3 DNA MER1_type 2235 2624 0 379 315 101 49 chr9 96744677 96744806 -45526638 + L2 LINE L2 2587 2708 -564 2140 116 23 3 chr9 96744806 96745108 -45526336 - AluSg SINE Alu 0 310 3 379 315 101 49 chr9 96745108 96745455 -45525989 + L2 LINE L2 2708 3088 -184 183 200 100 0 chr9 96747256 96747306 -45524138 + MIR SINE MIR 84 138 -124 2087 128 0 0 chr9 96747916 96748212 -45523232 - AluJb SINE Alu -16 296 1 207 100 0 0 chr9 96748732 96748762 -45522682 + (A)n Simple_repeat Simple_repeat 1 30 0 283 218 0 0 chr9 96749390 96749445 -45521999 + MLT1F1 LTR MaLR 501 555 -12 2350 70 0 33 chr9 96749755 96750054 -45521390 + AluY SINE Alu 1 289 -22 2428 100 0 0 chr9 96750650 96750961 -45520483 + AluY SINE Alu 1 311 0 195 341 34 11 chr9 96751177 96751265 -45520179 + MIR SINE MIR 149 238 -24 260 256 39 13 chr9 96751478 96751556 -45519888 - MER112 DNA MER1_type 0 260 181 1157 176 38 0 chr9 96751601 96751811 -45519633 - Tigger7 DNA MER2_type 0 2491 2274 2351 97 0 3 chr9 96751867 96752167 -45519277 + AluSq SINE Alu 1 299 -14 266 96 39 77 chr9 96752167 96752219 -45519225 - Tigger7 DNA MER2_type -211 2280 2231 219 139 0 0 chr9 96753453 96753489 -45517955 + (TG)n Simple_repeat Simple_repeat 2 37 0 33 85 0 0 chr9 96754898 96754980 -45516464 + AT_rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr9 96755196 96755218 -45516226 + AT_rich Low_complexity Low_complexity 1 22 0 391 301 107 70 chr9 96756875 96757344 -45514100 + L2 LINE L2 2442 2927 -387 2237 116 0 0 chr9 96757558 96757868 -45513576 - AluSx SINE Alu -2 310 1 588 204 82 143 chr9 96758001 96758232 -45513212 - MIR SINE MIR -28 234 18 2205 104 13 3 chr9 96758248 96758557 -45512887 + AluSx SINE Alu 1 312 0 2436 67 7 3 chr9 96758717 96759016 -45512428 + AluY SINE Alu 1 300 -11 1474 156 19 62 chr9 96759020 96759328 -45512116 + AluJo SINE Alu 1 295 -17 639 134 84 25 chr9 96759706 96759825 -45511619 - L1MCa LINE L1 -4828 1598 1473 451 133 27 0 chr9 96759830 96759905 -45511539 - L1MCa LINE L1 -5054 1372 1296 652 113 10 0 chr9 96759916 96760013 -45511431 - L1PB1 LINE L1 -1 6150 6053 1925 125 0 59 chr9 96760014 96760335 -45511109 - MER1B DNA MER1_type -37 302 1 32996 101 15 56 chr9 96760539 96766955 -45504489 + L1PA7 LINE L1 12 6154 0 3031 191 69 3 chr9 96768662 96769373 -45502071 + L1MB3 LINE L1 5425 6182 -1 337 219 88 51 chr9 96769498 96769635 -45501809 + MLT1L LTR MaLR 5 146 -469 342 200 13 0 chr9 96769651 96769726 -45501718 - Charlie1 DNA MER1_type -7 2754 2679 318 204 0 0 chr9 96769726 96769814 -45501630 + (TA)n Simple_repeat Simple_repeat 2 89 0 1062 204 23 0 chr9 96769846 96770067 -45501377 - Charlie1 DNA MER1_type -2534 227 2 254 178 0 0 chr9 96770415 96770460 -45500984 + MLT1L LTR MaLR 571 615 0 235 293 0 0 chr9 96770502 96770560 -45500884 + L2 LINE L2 3256 3313 0 21 57 0 0 chr9 96771059 96771094 -45500350 + AT_rich Low_complexity Low_complexity 1 35 0 203 321 72 90 chr9 96772028 96772305 -45499139 - L2 LINE L2 -14 3258 2987 600 249 31 16 chr9 96774447 96774640 -45496804 + ERVL LTR ERVL 4375 4570 -1194 1427 54 0 0 chr9 96776026 96776194 -45495250 - LTR5 LTR ERVK -3 966 799 1988 57 8 0 chr9 96776194 96776438 -45495006 - LTR5 LTR ERVK -723 246 1 870 197 27 0 chr9 96777291 96777479 -45493965 + MER20 DNA MER1_type 1 193 -26 266 198 36 149 chr9 96777505 96777727 -45493717 + MLT1D LTR MaLR 51 247 -258 373 257 0 0 chr9 96777807 96777908 -45493536 + MLT1D LTR MaLR 403 503 -2 2550 67 0 6 chr9 96778177 96778490 -45492954 - AluY SINE Alu 0 311 1 1660 142 11 18 chr9 96778705 96778980 -45492464 + AluSx SINE Alu 39 311 -1 5082 52 0 5 chr9 96780275 96780907 -45490537 - L1PA7 LINE L1 0 6154 5526 1753 148 0 62 chr9 96781235 96781573 -45489871 + AluJo SINE Alu 1 319 0 2220 113 30 3 chr9 96781593 96781928 -45489516 + L1MC1 LINE L1 5988 6331 -2 746 168 0 8 chr9 96781999 96782124 -45489320 + FLAM_A SINE Alu 10 133 -9 1529 130 32 18 chr9 96782990 96783074 -45488370 + L1MA6 LINE L1 6020 6101 -199 3269 114 34 2 chr9 96783074 96783572 -45487872 + MER75 DNA T2_type 1 514 0 1529 130 32 18 chr9 96783572 96783764 -45487680 + L1MA6 LINE L1 6101 6300 0 1079 265 60 7 chr9 96783818 96784319 -45487125 + L1M4c LINE L1 1378 2078 -4485 783 199 0 0 chr9 96784513 96784654 -45486790 + Tigger5 DNA MER2_type 1 141 -2182 527 154 57 0 chr9 96784659 96784782 -45486662 + L1M4c LINE L1 2804 2933 -3449 537 202 0 0 chr9 96784787 96784886 -45486558 + Tigger5 DNA MER2_type 143 241 -2082 485 183 106 0 chr9 96784884 96784988 -45486456 + Tigger5 DNA MER2_type 2209 2323 0 * 1580 150 28 49 chr9 96785171 96785285 -45486159 + AluJb SINE Alu 16 131 -181 1934 168 0 9 chr9 96785285 96785600 -45485844 + AluSx SINE Alu 1 312 0 1580 150 28 49 chr9 96785600 96785771 -45485673 + AluJb SINE Alu 131 295 -17 2126 239 48 28 chr9 96785787 96785918 -45485526 + L1MEc LINE L1 2154 2281 -3934 2325 117 0 0 chr9 96785918 96786225 -45485219 + AluSx SINE Alu 1 307 -5 2126 239 48 28 chr9 96786225 96786936 -45484508 + L1MEc LINE L1 2281 2974 -3241 4091 219 44 30 chr9 96786956 96789229 -45482215 + L1M1 LINE L1 2128 4451 -3114 21 36 0 0 chr9 96789293 96789321 -45482123 + AT_rich Low_complexity Low_complexity 1 28 0 935 149 12 18 chr9 96789331 96789499 -45481945 - FRAM SINE Alu -10 166 1 948 219 61 8 chr9 96790075 96790322 -45481122 + MIR SINE MIR 2 261 -1 477 144 0 0 chr9 96791113 96791203 -45480241 + (CA)n Simple_repeat Simple_repeat 1 90 0 24 0 0 0 chr9 96791511 96791535 -45479909 + AT_rich Low_complexity Low_complexity 1 24 0 699 148 0 0 chr9 96791837 96791938 -45479506 + FRAM SINE Alu 58 158 -18 1247 255 101 17 chr9 96791941 96792517 -45478927 + L1ME4a LINE L1 5490 6113 -8 230 209 99 44 chr9 96792602 96792693 -45478751 + MLT1L LTR MaLR 221 316 -299 200 189 75 57 chr9 96792719 96792772 -45478672 - L2 LINE L2 0 3272 3219 23 0 0 0 chr9 96793253 96793276 -45478168 + AT_rich Low_complexity Low_complexity 1 23 0 275 274 211 74 chr9 96793276 96793451 -45477993 - MIR SINE MIR -1 261 63 26 50 0 0 chr9 96794354 96794394 -45477050 + AT_rich Low_complexity Low_complexity 1 40 0 1530 190 7 30 chr9 96795065 96795360 -45476084 + AluJo SINE Alu 1 288 -24 1951 141 0 28 chr9 96795920 96796211 -45475233 - AluJo SINE Alu -29 283 1 518 288 54 19 chr9 96796694 96796899 -45474545 - LTR16C LTR ERVL -17 474 263 343 204 11 45 chr9 96796908 96796996 -45474448 + L1MEc LINE L1 1413 1497 -4899 5497 143 109 24 chr9 96797010 96797918 -45473526 + L1M2 LINE L1 3669 4498 -1648 2250 113 0 0 chr9 96797918 96798220 -45473224 + AluSx SINE Alu 1 302 -10 234 0 0 0 chr9 96798220 96798246 -45473198 + (TA)n Simple_repeat Simple_repeat 2 27 0 5497 143 109 24 chr9 96798246 96798557 -45472887 + L1M2 LINE L1 4497 4993 -1153 215 262 0 0 chr9 96798581 96798642 -45472802 + (CGG)n Simple_repeat Simple_repeat 3 63 0 21 0 0 0 chr9 96798729 96798750 -45472694 + GC_rich Low_complexity Low_complexity 1 21 0 1614 140 65 51 chr9 96801277 96801597 -45469847 + L1M2 LINE L1 4980 5307 -876 446 32 48 0 chr9 96801597 96801659 -45469785 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 1614 140 65 51 chr9 96801659 96801795 -45469649 + L1M2 LINE L1 5307 5440 -743 1461 147 20 8 chr9 96801795 96802040 -45469404 + AluJo SINE Alu 54 301 -11 1452 224 11 29 chr9 96802040 96802419 -45469025 + L1MA10 LINE L1 5962 6333 -1 22 0 0 0 chr9 96802695 96802717 -45468727 + AT_rich Low_complexity Low_complexity 1 22 0 195 305 40 80 chr9 96803303 96803454 -45467990 - L2 LINE L2 -195 3077 2933 180 152 0 0 chr9 96803653 96803686 -45467758 + CT-rich Low_complexity Low_complexity 4 36 0 1044 336 88 19 chr9 96804185 96804810 -45466634 - L2 LINE L2 -508 2806 2139 1837 159 0 0 chr9 96805839 96806116 -45465328 + AluJb SINE Alu 9 285 -27 1469 109 27 18 chr9 96806705 96806926 -45464518 - AluSg/x SINE Alu -12 298 76 279 0 0 0 chr9 96807428 96807459 -45463985 + (CA)n Simple_repeat Simple_repeat 2 32 0 310 306 28 0 chr9 96807492 96807600 -45463844 + L1MC4a LINE L1 5820 5930 -1878 1663 130 89 27 chr9 96807667 96807959 -45463485 - AluJb SINE Alu -2 310 1 2353 73 0 16 chr9 96808048 96808362 -45463082 + AluY SINE Alu 1 309 -2 295 301 53 38 chr9 96808562 96808695 -45462749 + MIR SINE MIR 51 185 -77 794 221 5 20 chr9 96809340 96809535 -45461909 + MER3 DNA MER1_type 18 209 0 1029 186 114 63 chr9 96809718 96810089 -45461355 - MLT1B LTR MaLR 0 396 1 882 215 61 16 chr9 96810145 96810578 -45460866 + HAL1 LINE L1 1284 1837 -670 21 0 0 0 chr9 96810692 96810713 -45460731 + AT_rich Low_complexity Low_complexity 1 21 0 2056 128 3 16 chr9 96810716 96811028 -45460416 + AluSx SINE Alu 1 308 -4 1715 147 7 43 chr9 96813119 96813418 -45458026 - AluJb SINE Alu -5 307 20 260 59 0 0 chr9 96813972 96814006 -45457438 + tRNA-Cys-TGC tRNA tRNA 4 37 -38 629 184 21 13 chr9 96814078 96814287 -45457157 - MSTD LTR MaLR 0 396 145 21 36 0 0 chr9 96814453 96814481 -45456963 + AT_rich Low_complexity Low_complexity 1 28 0 896 136 0 131 chr9 96814495 96814593 -45456851 - AluJb SINE Alu -10 302 239 1588 131 29 12 chr9 96814593 96814838 -45456606 - AluSx SINE Alu -63 249 1 896 136 0 131 chr9 96814838 96814930 -45456514 - AluJb SINE Alu -73 239 137 837 181 6 25 chr9 96815112 96815272 -45456172 + FRAM SINE Alu 3 159 -7 235 234 0 0 chr9 96815900 96815947 -45455497 - MLT1L LTR MaLR 0 615 569 372 251 209 61 chr9 96816025 96816288 -45455156 - MLT1J1 LTR MaLR -96 342 12 1699 176 13 13 chr9 96816333 96816634 -45454810 + AluJo SINE Alu 1 301 -11 254 330 45 17 chr9 96816863 96817039 -45454405 - MLT1L LTR MaLR -408 207 27 2372 68 34 0 chr9 96817215 96817508 -45453936 + AluY SINE Alu 1 303 -8 523 235 101 0 chr9 96817808 96817927 -45453517 - FLAM_A SINE Alu -2 131 1 324 0 0 0 chr9 96817962 96817998 -45453446 + (TG)n Simple_repeat Simple_repeat 1 36 0 1622 205 30 111 chr9 96818538 96818622 -45452822 - LTR41 LTR ERVL -6 767 678 1491 175 42 14 chr9 96818622 96818908 -45452536 - AluJb SINE Alu -18 294 1 1622 205 30 111 chr9 96818908 96819398 -45452046 - LTR41 LTR ERVL -95 678 240 3157 208 80 101 chr9 96819716 96820562 -45450882 + L1M4 LINE L1 3477 4340 -1806 449 65 16 0 chr9 96820562 96820624 -45450820 + MER41A LTR ERV1 400 462 -92 2498 64 0 3 chr9 96820624 96820922 -45450522 + AluSg SINE Alu 1 297 -13 3157 208 80 101 chr9 96820922 96821367 -45450077 + L1M4 LINE L1 4338 4801 -1345 1686 172 7 0 chr9 96821485 96821776 -45449668 - AluJo SINE Alu -19 293 1 242 220 0 59 chr9 96823490 96823608 -45447836 + C-rich Low_complexity Low_complexity 4 114 0 2282 74 10 7 chr9 96824585 96824881 -45446563 + AluSc SINE Alu 1 297 -12 2065 88 70 0 chr9 96824918 96825190 -45446254 + AluSx SINE Alu 1 291 -21 1901 151 29 12 chr9 96825524 96825869 -45445575 - L1PB4 LINE L1 -1 6155 5805 225 83 0 0 chr9 96826486 96826522 -45444922 + (TG)n Simple_repeat Simple_repeat 1 36 0 724 199 25 12 chr9 96826523 96826684 -45444760 - FRAM SINE Alu -2 164 2 1173 121 0 29 chr9 96827014 96827187 -45444257 - AluSg/x SINE Alu -5 307 140 282 353 0 0 chr9 96827256 96827375 -45444069 - MIR SINE MIR -33 229 111 867 229 87 100 chr9 96828354 96828825 -45442619 - MER39 LTR ERV1 0 707 243 376 269 107 74 chr9 96829235 96829544 -45441900 + MLT1J LTR MaLR 36 354 -157 2124 137 3 10 chr9 96829544 96829857 -45441587 + AluSp SINE Alu 1 311 -2 1905 118 158 78 chr9 96829934 96830308 -45441136 - MER4A LTR ERV1 0 664 261 645 131 0 10 chr9 96830308 96830407 -45441037 - MER4A LTR ERV1 -566 98 1 17046 104 50 16 chr9 96830408 96833080 -45438364 - MER4A-int LTR ERV1 0 6598 3837 3790 147 97 20 chr9 96833079 96833303 -45438141 - MER4A-int LTR ERV1 -2917 3681 3476 * 2149 110 7 3 chr9 96833303 96833594 -45437850 + AluSg SINE Alu 1 292 -18 3790 147 97 20 chr9 96833594 96834247 -45437197 - MER4A-int LTR ERV1 -3122 3476 2737 1490 142 71 0 chr9 96834247 96834487 -45436957 + LTR8 LTR ERV1 1 257 -434 4156 86 65 32 chr9 96834487 96834556 -45436888 - MER4A-int LTR ERV1 -4103 2495 2430 2210 107 17 0 chr9 96834556 96834847 -45436597 + AluSx SINE Alu 1 296 -16 4156 86 65 32 chr9 96834847 96835285 -45436159 - MER4A-int LTR ERV1 -4168 2430 1956 2353 119 0 0 chr9 96835285 96835597 -45435847 - AluSx SINE Alu 0 312 1 4156 86 65 32 chr9 96835597 96835798 -45435646 - MER4A-int LTR ERV1 -4642 1956 1763 258 56 0 0 chr9 96835815 96835851 -45435593 + (CA)n Simple_repeat Simple_repeat 2 37 0 4196 122 20 36 chr9 96835851 96835941 -45435503 - MER4A-int LTR ERV1 -5614 1144 1054 2431 74 0 3 chr9 96835941 96836239 -45435205 - AluY SINE Alu -14 297 1 4196 122 20 36 chr9 96836239 96837063 -45434381 - MER4A-int LTR ERV1 -5704 1054 189 1353 245 73 11 chr9 96837062 96837417 -45434027 - MER4A-int LTR ERV1 -4107 2224 1848 * 2548 110 240 65 chr9 96837562 96838136 -45433308 - MER4A-int LTR ERV1 -5923 675 1 1757 115 166 53 chr9 96838139 96838416 -45433028 - MER4A LTR ERV1 0 664 337 1940 139 13 19 chr9 96838416 96838726 -45432718 - AluSq SINE Alu -5 308 1 1757 115 166 53 chr9 96838726 96838804 -45432640 - MER4A LTR ERV1 -327 337 269 452 202 0 12 chr9 96838808 96838892 -45432552 - MER4A LTR ERV1 -567 97 15 592 167 0 49 chr9 96838892 96838994 -45432450 - LTR12 LTR ERV1 -138 576 480 298 255 31 20 chr9 96838995 96839093 -45432351 - LTR30 LTR ERV1 -80 642 544 263 100 0 0 chr9 96839111 96839151 -45432293 - LTR12 LTR ERV1 -441 273 234 1416 138 4 53 chr9 96839215 96839461 -45431983 - LTR12 LTR ERV1 -480 234 1 342 244 12 23 chr9 96839472 96839558 -45431886 + MLT1J LTR MaLR 415 499 -12 325 273 0 0 chr9 96840522 96840599 -45430845 - MIR SINE MIR -6 256 180 2456 90 0 0 chr9 96840705 96841017 -45430427 + AluSq SINE Alu 1 312 -1 2239 116 3 0 chr9 96841092 96841395 -45430049 + AluSg SINE Alu 1 304 -6 186 125 0 0 chr9 96841507 96841531 -45429913 + (G)n Simple_repeat Simple_repeat 1 24 0 1889 127 11 11 chr9 96841633 96841909 -45429535 - AluSx SINE Alu -36 276 1 485 205 124 95 chr9 96842309 96842655 -45428789 - HAL1 LINE L1 -11 2496 2141 366 123 0 0 chr9 96842657 96842714 -45428730 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 1690 154 41 0 chr9 96842723 96842990 -45428454 - AluJo SINE Alu -34 278 1 850 100 200 7 chr9 96842991 96843131 -45428313 - AluSc SINE Alu -8 301 135 2347 87 3 0 chr9 96844247 96844547 -45426897 - AluSx SINE Alu -10 302 2 2032 81 0 64 chr9 96845382 96845678 -45425766 - AluSx SINE Alu -18 294 18 484 239 64 60 chr9 96845795 96846013 -45425431 + L2 LINE L2 3076 3294 -19 467 234 22 71 chr9 96846017 96846130 -45425314 - HAL1 LINE L1 -1298 1209 1111 1631 156 23 33 chr9 96846130 96846431 -45425013 - AluJb SINE Alu -14 298 1 467 234 22 71 chr9 96846431 96846543 -45424901 - HAL1 LINE L1 -1396 1111 995 693 284 107 82 chr9 96846549 96847481 -45423963 - HAL1 LINE L1 -1550 957 2 1364 96 11 0 chr9 96848133 96848352 -45423092 - AluSg/x SINE Alu 0 352 132 216 0 0 0 chr9 96848352 96848376 -45423068 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2118 79 0 59 chr9 96848376 96848666 -45422778 - AluSx SINE Alu -28 284 12 180 0 0 0 chr9 96848755 96848775 -45422669 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1572 184 40 4 chr9 96848778 96849050 -45422394 - AluJo SINE Alu -30 282 1 263 93 23 0 chr9 96849265 96849308 -45422136 + (TC)n Simple_repeat Simple_repeat 1 44 0 1932 94 4 0 chr9 96849315 96849560 -45421884 - AluSp SINE Alu -67 246 1 1281 145 26 66 chr9 96849879 96850051 -45421393 + L1MB7 LINE L1 5107 5263 -883 2294 96 10 0 chr9 96850051 96850344 -45421100 - AluSx SINE Alu -16 296 1 1281 145 26 66 chr9 96850344 96850474 -45420970 + L1MB7 LINE L1 5263 5397 -749 2782 161 76 2 chr9 96850581 96851109 -45420335 + L1MB7 LINE L1 5617 6183 -1 245 165 83 150 chr9 96851156 96851184 -45420260 - L1MC5 LINE L1 -386 7575 7547 2302 100 0 3 chr9 96851184 96851484 -45419960 + AluSx SINE Alu 1 299 -13 245 165 83 150 chr9 96851484 96851588 -45419856 - L1MC5 LINE L1 -414 7547 7452 703 262 62 62 chr9 96851891 96852212 -45419232 - L3 LINE CR1 -506 1071 751 682 195 0 8 chr9 96852215 96852338 -45419106 - FLAM_C SINE Alu -20 123 2 291 322 68 23 chr9 96852423 96852600 -45418844 - L3 LINE CR1 -976 601 417 2383 68 24 0 chr9 96852691 96852984 -45418460 + AluY SINE Alu 3 302 -9 2048 96 39 11 chr9 96853280 96853562 -45417882 + AluSg SINE Alu 1 290 -20 1005 216 41 2 chr9 96855433 96855786 -45415658 - MLT1D LTR MaLR -85 420 1 947 274 100 3 chr9 96856361 96856671 -45414773 + MER102b DNA MER1_type 1 340 -1 293 273 364 0 chr9 96856837 96856969 -45414475 + MER5A DNA MER1_type 10 189 0 7718 179 52 72 chr9 96857048 96858837 -45412607 + MER52A LTR ERV1 1 1755 0 1713 173 16 19 chr9 96859046 96859369 -45412075 - MLT1A1 LTR MaLR -43 322 1 2249 73 0 10 chr9 96859515 96859803 -45411641 + AluY SINE Alu 27 311 0 767 238 0 6 chr9 96859810 96859974 -45411470 - AluJo SINE Alu -30 282 120 383 169 0 0 chr9 96859981 96860052 -45411392 - L1MA8 LINE L1 -4 6287 6217 2607 40 0 0 chr9 96860052 96860352 -45411092 + AluY SINE Alu 1 300 -11 775 154 21 0 chr9 96860365 96860508 -45410936 + L1MB4 LINE L1 5296 5441 -733 985 180 6 6 chr9 96860508 96860680 -45410764 + AluJb SINE Alu 137 308 -4 1876 179 66 3 chr9 96860703 96861066 -45410378 + L1MB4 LINE L1 5428 5813 -367 5052 158 14 37 chr9 96861066 96862001 -45409443 + MER49 LTR ERV1 1 913 -10 2250 128 0 0 chr9 96862002 96862314 -45409130 + AluSx SINE Alu 1 312 0 1513 178 100 9 chr9 96862335 96862666 -45408778 + L1MB4 LINE L1 5814 6174 -6 381 286 42 24 chr9 96863396 96863564 -45407880 + LTR16A1 LTR ERVL 287 457 0 183 324 49 20 chr9 96863969 96864071 -45407373 - MIR SINE MIR -91 171 67 3737 184 80 38 chr9 96864098 96864432 -45407012 - MER21B LTR ERV1 -3 860 542 1891 140 0 53 chr9 96864432 96864753 -45406691 - AluSx SINE Alu -8 304 1 3737 184 80 38 chr9 96864753 96865243 -45406201 - MER21B LTR ERV1 -321 542 1 2310 87 0 17 chr9 96865495 96865659 -45405785 - AluSg SINE Alu -16 294 136 2511 74 0 3 chr9 96865659 96865971 -45405473 - AluY SINE Alu 0 311 1 1179 96 0 6 chr9 96865971 96866105 -45405339 - AluSg SINE Alu -177 133 1 2310 87 0 17 chr9 96865971 96866105 -45405339 - AluSg SINE Alu -174 136 1 1234 170 47 0 chr9 96866229 96866441 -45405003 - AluJb SINE Alu -5 307 86 456 255 3 40 chr9 96866448 96866616 -45404828 - L1MB3 LINE L1 -332 5851 5695 1637 211 66 50 chr9 96866750 96867247 -45404197 - MLT1D LTR MaLR 0 505 1 2458 82 3 0 chr9 96867304 96867609 -45403835 - AluSg SINE Alu -4 306 1 1049 175 11 5 chr9 96867821 96868010 -45403434 + AluJb SINE Alu 119 308 -4 1520 137 50 50 chr9 96868234 96868533 -45402911 + AluJb SINE Alu 14 312 0 2379 90 0 3 chr9 96868603 96868903 -45402541 + AluSq SINE Alu 1 299 -14 322 297 40 7 chr9 96868903 96869051 -45402393 + HAL1 LINE L1 1514 1666 -841 29 60 0 0 chr9 96870584 96870634 -45400810 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr9 96871339 96871362 -45400082 + AT_rich Low_complexity Low_complexity 1 23 0 231 103 0 0 chr9 96871624 96871653 -45399791 - Tigger5 DNA MER2_type 0 2323 2295 314 219 236 8 chr9 96872196 96872319 -45399125 - MER5A DNA MER1_type -30 159 9 842 152 23 0 chr9 96872412 96872544 -45398900 + AluSq/x SINE Alu 1 135 -177 2044 132 0 0 chr9 96872544 96872845 -45398599 + AluSx SINE Alu 1 301 0 2612 53 0 0 chr9 96873244 96873548 -45397896 + AluY SINE Alu 1 304 -7 269 146 55 0 chr9 96873572 96873627 -45397817 - MLT1L LTR MaLR -536 79 22 966 229 75 0 chr9 96873627 96873854 -45397590 + MLT1D LTR MaLR 1 244 -261 399 221 132 37 chr9 96873898 96874034 -45397410 + MLT1D LTR MaLR 357 505 0 432 136 0 25 chr9 96874459 96874540 -45396904 - MER53 DNA DNA 0 189 111 1370 219 169 16 chr9 96874546 96874979 -45396465 - MLT1D LTR MaLR -6 499 1 658 136 25 25 chr9 96874979 96875094 -45396350 - MER53 DNA DNA -74 115 1 2456 69 0 0 chr9 96875701 96875991 -45395453 - AluSc SINE Alu -19 290 1 777 217 32 42 chr9 96876107 96876324 -45395120 + LTR37B LTR ERV1 1 215 -253 209 191 24 0 chr9 96876444 96876486 -45394958 + CT-rich Low_complexity Low_complexity 2 44 0 673 239 16 60 chr9 96876486 96876670 -45394774 - AluJo/FRAM SINE Alu 0 312 137 1667 141 0 4 chr9 96876670 96876912 -45394532 - AluJo SINE Alu -5 307 67 509 208 31 15 chr9 96876912 96877042 -45394402 + LTR37B LTR ERV1 333 464 -4 2121 89 17 24 chr9 96877179 96877472 -45393972 - AluSx SINE Alu -21 291 1 539 307 68 59 chr9 96877625 96878065 -45393379 + MLT1K LTR MaLR 145 588 0 1211 136 0 0 chr9 96879742 96879918 -45391526 - AluSg/x SINE Alu -5 307 132 2402 46 0 7 chr9 96880362 96880670 -45390774 + AluY SINE Alu 1 306 0 2404 74 0 3 chr9 96881082 96881381 -45390063 - AluSg SINE Alu -7 303 6 1937 166 3 3 chr9 96881461 96881763 -45389681 - AluJb SINE Alu -7 305 4 779 248 132 36 chr9 96881775 96882158 -45389286 - L1ME1 LINE L1 0 6178 5734 1768 182 33 20 chr9 96882158 96882534 -45388910 + MLT2B1 LTR ERVL 1 451 -64 205 194 0 0 chr9 96882585 96882621 -45388823 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 297 164 0 20 chr9 96882661 96882718 -45388726 + MLT2C2 LTR ERVL 416 464 0 3166 204 67 27 chr9 96882718 96883937 -45387507 - L1ME1 LINE L1 -428 5738 4477 1638 178 45 0 chr9 96883941 96884227 -45387217 - AluJo SINE Alu -11 301 3 1439 196 7 31 chr9 96884231 96884522 -45386922 - AluJo SINE Alu -16 296 13 1986 152 0 17 chr9 96884535 96884832 -45386612 - AluSx SINE Alu -20 292 1 1540 199 97 75 chr9 96885465 96885542 -45385902 + MLT1F LTR MaLR 14 88 -454 2322 87 0 0 chr9 96885542 96885829 -45385615 - AluSc SINE Alu -22 287 1 2099 139 0 28 chr9 96885832 96886149 -45385295 - AluSx SINE Alu -4 308 1 1540 199 97 75 chr9 96886149 96886584 -45384860 + MLT1F LTR MaLR 89 541 -1 311 257 14 0 chr9 96887083 96887153 -45384291 - L2 LINE L2 0 3272 3202 264 253 40 0 chr9 96887398 96887473 -45383971 - L2 LINE L2 0 3272 3195 285 327 97 0 chr9 96887565 96887678 -45383766 + L2 LINE L2 3138 3261 -11 2375 92 0 0 chr9 96888026 96888320 -45383124 - AluSg SINE Alu -16 294 1 292 337 76 6 chr9 96889637 96889809 -45381635 + LTR67 LTR ERVL 371 554 -3 1479 207 5 63 chr9 96889914 96889984 -45381460 - MLT1A1 LTR MaLR -1 364 292 2552 71 0 0 chr9 96889984 96890295 -45381149 + AluY SINE Alu 1 311 0 1479 207 5 63 chr9 96890295 96890606 -45380838 - MLT1A1 LTR MaLR -73 292 5 185 321 25 49 chr9 96890646 96890727 -45380717 - L2 LINE L2 0 3313 3235 446 261 44 28 chr9 96890896 96891076 -45380368 + MER5A DNA MER1_type 7 189 0 3518 154 128 112 chr9 96891716 96892001 -45379443 - L1MC3 LINE L1 -21 8158 7879 1546 136 0 0 chr9 96892001 96892229 -45379215 - MER30 DNA MER1_type 0 230 3 3518 154 128 112 chr9 96892229 96892422 -45379022 - L1MC3 LINE L1 -300 7879 7691 2008 138 0 16 chr9 96892422 96892727 -45378717 - AluSx SINE Alu -12 300 1 3518 154 128 112 chr9 96892727 96892805 -45378639 - L1MC3 LINE L1 -488 7691 7616 228 297 14 0 chr9 96892805 96892879 -45378565 - MLT1F1 LTR MaLR -442 125 51 3518 154 128 112 chr9 96892879 96893305 -45378139 - L1MC3 LINE L1 -563 7616 7083 235 182 45 15 chr9 96893641 96893707 -45377737 - MER5A DNA MER1_type -44 145 78 2109 102 33 0 chr9 96894192 96894507 -45376937 + AluSx SINE Alu 1 324 0 647 200 150 6 chr9 96894967 96895147 -45376297 + MER20 DNA MER1_type 9 214 -5 455 165 10 31 chr9 96895254 96895351 -45376093 + FLAM_A SINE Alu 35 129 -13 443 181 1 96 chr9 96896709 96896793 -45374651 - L1MC3 LINE L1 -601 6035 5982 2005 139 7 13 chr9 96896793 96897103 -45374341 - AluJb SINE Alu -4 308 1 443 181 1 96 chr9 96897103 96897146 -45374298 - L1MC3 LINE L1 -654 5982 5937 * 487 224 287 8 chr9 96897125 96897362 -45374082 - L1MC3 LINE L1 -1111 5429 5127 * 1400 254 5 20 chr9 96897360 96897758 -45373686 + L1M4 LINE L1 4183 4574 -1572 998 217 4 16 chr9 96897785 96898034 -45373410 - L1MC3 LINE L1 -1414 5126 4881 255 226 98 20 chr9 96898071 96898173 -45373271 - L1MC3 LINE L1 -6413 127 18 1526 200 0 11 chr9 96898179 96898449 -45372995 + Tigger7 DNA MER2_type 1 267 -2220 573 146 11 0 chr9 96898447 96898536 -45372908 + Tigger7 DNA MER2_type 2390 2479 -8 * 211 369 57 8 chr9 96898539 96898661 -45372783 + L2 LINE L2 3145 3272 0 616 289 24 24 chr9 96898807 96899056 -45372388 + MIR SINE MIR 12 260 -2 2391 90 3 0 chr9 96899205 96899505 -45371939 + AluSp SINE Alu 1 301 -12 389 205 156 25 chr9 96899672 96899794 -45371650 + L1MEd LINE L1 17 154 -5965 4745 190 43 26 chr9 96899815 96900982 -45370462 + L1MA4 LINE L1 2600 3786 -2360 2023 118 3 17 chr9 96900984 96901280 -45370164 + AluSc SINE Alu 1 292 -17 5899 147 22 34 chr9 96901280 96901353 -45370091 + L1MA4 LINE L1 4321 4393 -1907 222 37 0 0 chr9 96901353 96901380 -45370064 + (CA)n Simple_repeat Simple_repeat 2 28 0 5899 147 22 34 chr9 96901380 96902916 -45368528 + L1MA4 LINE L1 4393 5926 -374 2393 103 3 0 chr9 96902916 96903227 -45368217 + AluSx SINE Alu 1 312 0 5899 147 22 34 chr9 96903227 96903591 -45367853 + L1MA4 LINE L1 5926 6293 -7 1951 138 0 4 chr9 96903686 96903961 -45367483 - AluJb SINE Alu -38 274 1 240 118 0 0 chr9 96904189 96904223 -45367221 + Alu SINE Alu 193 226 -77 614 352 22 8 chr9 96904241 96904508 -45366936 + L1MEd LINE L1 502 772 -5347 15623 175 51 16 chr9 96904541 96908638 -45362806 + L1PB1 LINE L1 762 5196 -1671 279 0 0 0 chr9 96908638 96908669 -45362775 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 15623 175 51 16 chr9 96908669 96910401 -45361043 + L1PB1 LINE L1 5196 6865 -2 180 340 0 39 chr9 96911215 96911318 -45360126 - MIR SINE MIR -63 145 47 661 140 33 13 chr9 96912879 96913029 -45358415 + CT-rich Low_complexity Low_complexity 2 154 0 2207 122 3 0 chr9 96913037 96913341 -45358103 - AluSq SINE Alu -6 307 3 2231 116 0 3 chr9 96913411 96913713 -45357731 + AluSx SINE Alu 1 301 -11 358 264 151 38 chr9 96913808 96913967 -45357477 - MLT1J LTR MaLR -331 180 4 373 238 53 33 chr9 96914097 96914248 -45357196 - L1ME4a LINE L1 -38 6083 5930 693 229 92 22 chr9 96914668 96914895 -45356549 - MIR SINE MIR 0 262 20 477 357 66 18 chr9 96914887 96915173 -45356271 - L3 LINE CR1 -390 1187 888 * 192 162 27 0 chr9 96916921 96916958 -45354486 - L2 LINE L2 -25 3247 3210 220 303 22 11 chr9 96916978 96917067 -45354377 - MIR SINE MIR -57 151 62 615 252 72 13 chr9 96917269 96917598 -45353846 - LTR16A LTR ERVL -9 441 73 284 218 0 0 chr9 96917744 96917799 -45353645 + HsTC2 DNA Tc2 20 74 -1824 1054 196 10 10 chr9 96918108 96918312 -45353132 + MER2 DNA MER2_type 8 211 -134 356 208 65 0 chr9 96918762 96918839 -45352605 + MER2 DNA MER2_type 264 345 0 370 281 82 45 chr9 96919135 96919466 -45351978 - HAL1 LINE L1 -291 2216 1874 233 216 20 0 chr9 96919590 96919641 -45351803 + (CA)n Simple_repeat Simple_repeat 2 53 0 1191 172 90 68 chr9 96919642 96919996 -45351448 - L1ME2 LINE L1 -9 6155 5794 356 192 0 14 chr9 96920003 96920076 -45351368 - MLT1A2 LTR MaLR 0 374 303 377 209 0 0 chr9 96920078 96920145 -45351299 - MLT1A2 LTR MaLR -307 67 1 378 78 0 0 chr9 96920145 96920196 -45351248 - MLT1A2-int LTR MaLR 0 1735 1685 283 204 0 0 chr9 96920199 96920248 -45351196 + Tigger5 DNA MER2_type 7 55 -2268 * 334 171 13 66 chr9 96920217 96920293 -45351151 + Tigger5 DNA MER2_type 2251 2322 -1 486 139 23 12 chr9 96920327 96920413 -45351031 + Tigger5 DNA MER2_type 2237 2323 0 3806 222 36 71 chr9 96920413 96921552 -45349892 - MLT1A2-int LTR MaLR -48 1323 225 938 248 104 29 chr9 96921550 96922107 -45349337 + L1ME LINE L1 2390 2988 -3158 * 1290 150 109 12 chr9 96922115 96922362 -45349082 + AluJo SINE Alu 23 293 -19 946 254 23 33 chr9 96922365 96922795 -45348649 + L1ME LINE L1 3032 3457 -2689 1315 184 36 57 chr9 96922811 96923147 -45348297 - MER33 DNA MER1_type -5 319 1 32 26 0 0 chr9 96923179 96923218 -45348226 + AT_rich Low_complexity Low_complexity 1 39 0 283 298 26 9 chr9 96923264 96923378 -45348066 + L1ME LINE L1 5401 5516 -648 305 131 16 0 chr9 96923578 96923639 -45347805 + (TG)n Simple_repeat Simple_repeat 2 63 0 2306 62 0 0 chr9 96923825 96924114 -45347330 - AluY SINE Alu -22 289 1 205 233 126 117 chr9 96925117 96925141 -45346303 + L2 LINE L2 3169 3191 -81 2230 103 10 0 chr9 96925141 96925451 -45345993 - AluSp SINE Alu 0 313 1 205 233 126 117 chr9 96925451 96925529 -45345915 + L2 LINE L2 3191 3272 0 1579 130 15 19 chr9 96926339 96926600 -45344844 + AluJo SINE Alu 44 303 -9 747 222 74 6 chr9 96927064 96927240 -45344204 - MER63A DNA MER1_type -22 188 1 1255 160 0 14 chr9 96927484 96927696 -45343748 + AluJb SINE Alu 89 297 -15 990 297 31 23 chr9 96927934 96928449 -45342995 + HAL1b LINE L1 6 524 -824 447 302 37 95 chr9 96928786 96928883 -45342561 + L1MEc LINE L1 2060 2161 -4054 2127 96 0 10 chr9 96928883 96929176 -45342268 + AluSx SINE Alu 1 290 -22 447 302 37 95 chr9 96929176 96929347 -45342097 + L1MEc LINE L1 2161 2253 -3962 1881 153 0 0 chr9 96929347 96929653 -45341791 + AluSx SINE Alu 1 306 0 447 302 37 95 chr9 96929653 96929870 -45341574 + L1MEc LINE L1 2253 2481 -3734 492 254 321 0 chr9 96929910 96930178 -45341266 + L1MC4 LINE L1 7688 8041 -1 2569 48 0 0 chr9 96930185 96930496 -45340948 + AluY SINE Alu 1 311 0 288 160 120 0 chr9 96930524 96930599 -45340845 + L1ME3 LINE L1 6079 6162 0 2464 58 0 3 chr9 96930609 96930920 -45340524 + AluY SINE Alu 2 311 0 270 233 35 12 chr9 96931091 96931177 -45340267 + L1MC4 LINE L1 7924 8011 -31 28 102 0 0 chr9 96931997 96932095 -45339349 + GC_rich Low_complexity Low_complexity 1 98 0 250 385 0 0 chr9 96932117 96932226 -45339218 + C-rich Low_complexity Low_complexity 1 109 0 2150 85 10 0 chr9 96932436 96932730 -45338714 + AluSx SINE Alu 7 303 -9 2947 85 30 5 chr9 96932768 96933202 -45338242 + L1MA1 LINE L1 5854 6298 -4 26 104 0 0 chr9 96933209 96933305 -45338139 + AT_rich Low_complexity Low_complexity 1 96 0 1831 154 7 0 chr9 96933373 96933671 -45337773 - AluSx SINE Alu -12 300 1 1836 124 157 57 chr9 96934093 96934481 -45336963 + MSTA LTR MaLR 2 428 0 1931 158 86 0 chr9 96935131 96935467 -45335977 + MLT1A1 LTR MaLR 1 365 0 247 275 0 62 chr9 96935521 96935601 -45335843 + MIR SINE MIR 30 104 -158 229 97 0 0 chr9 96935659 96935690 -45335754 + MLT1J LTR MaLR 107 137 -374 319 289 58 0 chr9 96935945 96936049 -45335395 + LTR67 LTR ERVL 441 550 -7 598 248 7 7 chr9 96936085 96936230 -45335214 + MLT2F LTR ERVL 2 146 -517 * 704 215 2 56 chr9 96936229 96936413 -45335031 + MLT1E3 LTR MaLR 46 276 -378 817 65 52 0 chr9 96936551 96936706 -45334738 + (TCTA)n Simple_repeat Simple_repeat 3 165 0 562 80 86 0 chr9 96936725 96936888 -45334556 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 271 152 0 0 chr9 96936893 96936939 -45334505 + MLT2F LTR ERVL 617 662 -1 281 278 130 9 chr9 96936939 96937047 -45334397 + MIR SINE MIR 108 228 -34 3232 177 44 69 chr9 96937830 96938597 -45332847 + L1MB7 LINE L1 5428 6175 -9 234 128 0 0 chr9 96938976 96939015 -45332429 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 642 264 68 0 chr9 96939697 96939860 -45331584 - MIR SINE MIR -69 193 20 22 0 0 0 chr9 96939860 96939882 -45331562 + AT_rich Low_complexity Low_complexity 1 22 0 3428 84 0 0 chr9 96939882 96940334 -45331110 - L1PA14 LINE L1 -3 6158 5707 344 245 14 101 chr9 96940430 96940569 -45330875 + MIR SINE MIR 61 187 -75 199 287 41 57 chr9 96940648 96940770 -45330674 - MIR SINE MIR -56 206 87 241 383 0 12 chr9 96941190 96941271 -45330173 - L3 LINE CR1 -1 1576 1497 294 279 36 72 chr9 96941340 96941451 -45329993 + MIR SINE MIR 34 140 -122 332 276 0 0 chr9 96941715 96941813 -45329631 - MIR SINE MIR 0 262 165 221 341 8 46 chr9 96941965 96942098 -45329346 - MIR SINE MIR -73 135 25 282 336 28 28 chr9 96942597 96942704 -45328740 + L3 LINE CR1 1256 1362 -215 635 253 49 19 chr9 96942897 96943059 -45328385 - MER5B DNA MER1_type -1 177 11 297 167 0 33 chr9 96944262 96944322 -45327122 - Alu SINE Alu -9 292 235 561 125 0 0 chr9 96944540 96944628 -45326816 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 2134 51 0 11 chr9 96944628 96944903 -45326541 - AluY SINE Alu -39 272 1 578 291 47 12 chr9 96945212 96945568 -45325876 + LTR16A LTR ERVL 57 450 0 282 256 23 78 chr9 96945740 96945869 -45325575 - MLT1K LTR MaLR -91 497 376 548 322 19 15 chr9 96945981 96946186 -45325258 - MLT1K LTR MaLR -357 231 26 666 303 17 0 chr9 96946444 96946622 -45324822 - MER5A DNA MER1_type -6 183 3 1953 109 11 0 chr9 96946680 96946988 -45324456 - AluSx SINE Alu 0 316 6 317 328 39 8 chr9 96947009 96947137 -45324307 + L2 LINE L2 2925 3056 -216 669 71 0 0 chr9 96947198 96947282 -45324162 + AluJ/FLAM SINE Alu 2 85 -227 188 245 0 61 chr9 96947320 96947369 -45324075 + L2 LINE L2 3185 3230 -42 364 315 18 0 chr9 96947489 96947600 -45323844 + MIR SINE MIR 61 173 -89 1036 269 13 93 chr9 96947613 96947862 -45323582 - L2 LINE L2 -12 3301 3102 2310 53 0 0 chr9 96947862 96948143 -45323301 - AluY SINE Alu -11 300 20 1036 269 13 93 chr9 96948143 96948342 -45323102 - L2 LINE L2 -211 3102 2889 1111 217 18 0 chr9 96948413 96948630 -45322814 - MER58A DNA MER1_type 0 224 4 216 219 231 71 chr9 96949789 96949958 -45321486 + MIR3 SINE MIR 13 208 0 1815 189 58 20 chr9 96950936 96951333 -45320111 - Tigger2 DNA MER2_type -2 2716 2305 630 141 0 29 chr9 96951360 96951481 -45319963 - Tigger2a DNA MER2_type -325 109 1 248 272 62 12 chr9 96952786 96952867 -45318577 - MIR SINE MIR -58 150 66 424 225 183 0 chr9 96953180 96953322 -45318122 - MER5A DNA MER1_type -21 168 1 555 256 64 29 chr9 96953365 96953537 -45317907 - MER58A DNA MER1_type -28 196 19 692 179 36 14 chr9 96953908 96954048 -45317396 + L1PB4 LINE L1 6012 6154 -2 24 0 0 0 chr9 96954893 96954917 -45316527 + AT_rich Low_complexity Low_complexity 1 24 0 297 75 0 0 chr9 96955277 96955317 -45316127 + (CA)n Simple_repeat Simple_repeat 2 41 0 353 236 209 0 chr9 96957222 96957370 -45314074 + L1ME3A LINE L1 5908 6086 -84 630 256 84 11 chr9 96958653 96958844 -45312600 - MER3 DNA MER1_type 0 209 5 261 0 0 0 chr9 96963117 96963146 -45308298 + (CA)n Simple_repeat Simple_repeat 2 30 0 2193 79 3 3 chr9 96963928 96964218 -45307226 - AluSg1 SINE Alu -19 290 1 315 241 106 43 chr9 96972376 96972537 -45298907 - MIR SINE MIR -63 145 23 197 324 65 0 chr9 96974517 96974631 -45296813 - MIR SINE MIR -68 140 31 2212 114 3 0 chr9 96976833 96977131 -45294313 - AluSq SINE Alu -10 303 5 23 0 0 0 chr9 96977156 96977179 -45294265 + AT_rich Low_complexity Low_complexity 1 23 0 1013 186 59 0 chr9 96977236 96977440 -45294004 + L1MC1 LINE L1 6117 6332 -1 2247 92 16 22 chr9 96978381 96978695 -45292749 - AluSx SINE Alu 0 312 1 1629 184 3 10 chr9 96978695 96978855 -45292589 - AluJo SINE Alu -12 300 141 1706 179 38 0 chr9 96978855 96979145 -45292299 - AluJb SINE Alu -11 301 1 1629 184 3 10 chr9 96979145 96979278 -45292166 - AluJo SINE Alu -171 141 9 2226 116 0 28 chr9 96981582 96981900 -45289544 + AluY SINE Alu 1 309 -2 323 330 105 74 chr9 96982328 96982547 -45288897 - L2 LINE L2 -46 3226 2994 2350 81 10 0 chr9 96982547 96982844 -45288600 + AluSp SINE Alu 1 300 -13 323 330 105 74 chr9 96982844 96982909 -45288535 - L2 LINE L2 -278 2994 2933 2488 61 3 0 chr9 96984332 96984625 -45286819 - AluSg SINE Alu -10 300 7 288 283 9 19 chr9 96984938 96985044 -45286400 + GA-rich Low_complexity Low_complexity 5 109 0 25 0 0 0 chr9 96985308 96985333 -45286111 + AT_rich Low_complexity Low_complexity 1 25 0 623 254 81 0 chr9 96987904 96988077 -45283367 + MER5A DNA MER1_type 1 187 -2 181 133 33 0 chr9 96990925 96990955 -45280489 - L3 LINE CR1 -1122 455 425 28 0 0 0 chr9 96991688 96991716 -45279728 + AT_rich Low_complexity Low_complexity 1 28 0 1378 216 63 7 chr9 96993580 96993698 -45277746 + AluJb SINE Alu 2 112 -200 254 93 0 23 chr9 96993698 96993741 -45277703 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1378 216 63 7 chr9 96993741 96993909 -45277535 + AluJb SINE Alu 112 304 -8 990 141 32 0 chr9 96993911 96994067 -45277377 + FRAM SINE Alu 1 161 -15 192 77 0 0 chr9 96994200 96994226 -45277218 + (A)n Simple_repeat Simple_repeat 1 26 0 384 360 19 12 chr9 96994687 96994848 -45276596 + MIR3 SINE MIR 19 180 -28 2281 117 0 0 chr9 96995713 96996012 -45275432 + AluSx SINE Alu 1 299 -13 550 312 157 13 chr9 96999376 96999770 -45271674 - L2 LINE L2 0 3313 2863 1699 174 3 14 chr9 97000138 97000425 -45271019 - AluJb SINE Alu -12 300 17 2483 60 0 7 chr9 97000592 97000891 -45270553 - AluY SINE Alu -14 297 1 1523 201 3 35 chr9 97000981 97001299 -45270145 + AluJo SINE Alu 1 308 -4 333 0 0 0 chr9 97001310 97001347 -45270097 + (CA)n Simple_repeat Simple_repeat 2 38 0 2233 151 18 8 chr9 97001405 97001803 -45269641 + L1MA4 LINE L1 5890 6291 -9 205 280 32 83 chr9 97002085 97002242 -45269202 + MIR SINE MIR 58 206 -56 293 276 69 69 chr9 97002312 97002428 -45269016 - MIR SINE MIR -110 152 37 663 154 115 0 chr9 97002522 97002652 -45268792 + Tigger4(Zombi) DNA MER2_type 1 145 -2586 * 4750 132 33 15 chr9 97002650 97003496 -45267948 + Tigger4(Zombi) DNA MER2_type 1871 2731 0 186 43 0 0 chr9 97007327 97007350 -45264094 + (A)n Simple_repeat Simple_repeat 1 23 0 219 232 0 18 chr9 97010260 97010316 -45261128 + GA-rich Low_complexity Low_complexity 4 58 0 413 158 40 50 chr9 97011687 97011788 -45259656 - MER45B DNA AcHobo -85 955 856 1160 151 41 37 chr9 97011955 97012173 -45259271 + MER20 DNA MER1_type 1 219 0 366 288 171 39 chr9 97012886 97013219 -45258225 + L2 LINE L2 2893 3269 -3 183 156 0 0 chr9 97013498 97013530 -45257914 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr9 97014340 97014366 -45257078 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 2995 13 0 0 chr9 97014524 97014842 -45256602 + AluYb8 SINE Alu 1 318 0 191 237 26 0 chr9 97014900 97014938 -45256506 + L2 LINE L2 3216 3254 -18 228 245 41 0 chr9 97015670 97015719 -45255725 + L2 LINE L2 3252 3302 -11 200 214 0 29 chr9 97016642 97016712 -45254732 + (CCG)n Simple_repeat Simple_repeat 1 68 0 37 109 0 0 chr9 97016810 97016966 -45254478 + GC_rich Low_complexity Low_complexity 1 156 0 33 0 0 0 chr9 97017157 97017190 -45254254 + GC_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr9 97018156 97018190 -45253254 + GC_rich Low_complexity Low_complexity 1 34 0 207 200 20 20 chr9 97018461 97018511 -45252933 + C-rich Low_complexity Low_complexity 5 54 0 231 36 0 0 chr9 97018695 97018723 -45252721 + (CA)n Simple_repeat Simple_repeat 2 29 0 253 206 0 0 chr9 97018822 97018885 -45252559 + (TG)n Simple_repeat Simple_repeat 1 63 0 207 0 0 0 chr9 97019154 97019177 -45252267 + (CCG)n Simple_repeat Simple_repeat 3 25 0 221 276 0 0 chr9 97019310 97019368 -45252076 + (CCG)n Simple_repeat Simple_repeat 1 58 0 23 0 0 0 chr9 97019535 97019558 -45251886 + GC_rich Low_complexity Low_complexity 1 23 0 240 224 30 15 chr9 97020022 97020089 -45251355 + GA-rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr9 97021287 97021308 -45250136 + AT_rich Low_complexity Low_complexity 1 21 0 217 222 37 0 chr9 97021524 97021578 -45249866 + GA-rich Low_complexity Low_complexity 2 57 0 29 70 0 0 chr9 97021633 97021690 -45249754 + GC_rich Low_complexity Low_complexity 1 57 0 31 76 0 0 chr9 97021908 97021974 -45249470 + GC_rich Low_complexity Low_complexity 1 66 0 306 329 0 26 chr9 97022008 97022163 -45249281 + CT-rich Low_complexity Low_complexity 1 151 0 243 0 0 0 chr9 97025412 97025439 -45246005 + (TG)n Simple_repeat Simple_repeat 1 27 0 41 106 0 0 chr9 97026964 97027124 -45244320 + GC_rich Low_complexity Low_complexity 1 160 0 234 192 0 0 chr9 97027447 97027499 -45243945 + CT-rich Low_complexity Low_complexity 2 53 0 25 0 0 0 chr9 97028759 97028784 -45242660 + GC_rich Low_complexity Low_complexity 1 25 0 358 162 29 0 chr9 97029482 97029550 -45241894 - MER69A DNA AcHobo -72 105 36 3650 92 48 48 chr9 97029845 97030477 -45240967 + LTR10E LTR ERV1 1 632 -1 2137 126 27 0 chr9 97031119 97031412 -45240032 - AluSc SINE Alu -8 301 1 1892 147 84 25 chr9 97033047 97033233 -45238211 - MLT1B LTR MaLR 0 390 217 1869 190 0 3 chr9 97033233 97033544 -45237900 - AluJo SINE Alu -2 310 1 1892 147 84 25 chr9 97033544 97033725 -45237719 - MLT1B LTR MaLR -173 217 1 233 257 76 104 chr9 97034053 97034197 -45237247 + MER5B DNA MER1_type 1 140 -38 2456 83 43 3 chr9 97034207 97034557 -45236887 + THE1B LTR MaLR 1 364 0 239 240 73 10 chr9 97034557 97034653 -45236791 + L1MC4 LINE L1 7931 8032 -10 2525 88 0 0 chr9 97034677 97034985 -45236459 - AluSg SINE Alu -2 308 1 806 301 99 26 chr9 97035236 97035661 -45235783 + L1ME3A LINE L1 5426 5881 -289 2205 86 11 4 chr9 97035700 97036002 -45235442 + AluSc SINE Alu 1 304 0 2107 89 0 0 chr9 97036461 97036732 -45234712 + AluY SINE Alu 40 310 -1 1914 108 0 0 chr9 97037025 97037276 -45234168 + AluSx SINE Alu 49 299 -13 21 57 0 0 chr9 97037890 97037925 -45233519 + AT_rich Low_complexity Low_complexity 1 35 0 1896 211 55 0 chr9 97038114 97038554 -45232890 - MLT1C LTR MaLR -3 464 1 2388 99 3 0 chr9 97039511 97039813 -45231631 + AluSq SINE Alu 1 303 -10 1052 132 32 42 chr9 97039822 97040011 -45231433 + MER5A DNA MER1_type 2 188 -1 320 321 9 0 chr9 97040561 97040670 -45230774 + L1M4 LINE L1 4781 4890 -1256 952 214 62 24 chr9 97040685 97041021 -45230423 + LTR37A LTR ERV1 78 426 0 1566 173 10 58 chr9 97041267 97041579 -45229865 + AluJb SINE Alu 1 297 -15 713 257 96 55 chr9 97041830 97042227 -45229217 - MLT1J LTR MaLR 0 511 99 204 206 0 0 chr9 97042328 97042362 -45229082 + (TAG)n Simple_repeat Simple_repeat 2 35 0 304 329 101 32 chr9 97042384 97042542 -45228902 + MIR3 SINE MIR 1 169 -39 1556 198 119 29 chr9 97042813 97043267 -45228177 + MLT1D LTR MaLR 1 495 -10 5881 146 27 11 chr9 97043366 97044637 -45226807 + L1MA4 LINE L1 5008 6300 0 391 235 0 150 chr9 97045155 97045342 -45226102 + LTR16C LTR ERVL 161 319 -172 5284 111 43 15 chr9 97045554 97047115 -45224329 + L1PA13 LINE L1 4438 5954 -209 2316 104 0 7 chr9 97047115 97047413 -45224031 + AluSx SINE Alu 1 296 -16 207 0 0 0 chr9 97047416 97047439 -45224005 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5284 111 43 15 chr9 97047439 97047570 -45223874 + L1PA13 LINE L1 5955 6163 0 2106 115 7 0 chr9 97047817 97048121 -45223323 - AluSx SINE Alu 0 306 1 23 33 0 0 chr9 97048178 97048208 -45223236 + AT_rich Low_complexity Low_complexity 1 30 0 2333 97 10 0 chr9 97049078 97049378 -45222066 + AluSg SINE Alu 1 303 -7 322 276 246 20 chr9 97050318 97050521 -45220923 + MIR SINE MIR 2 250 -12 1212 272 93 7 chr9 97050547 97050999 -45220445 + LTR16C LTR ERVL 1 491 0 1836 130 14 24 chr9 97051418 97051711 -45219733 - AluJb SINE Alu -19 293 4 1797 164 14 4 chr9 97051753 97052061 -45219383 - AluJo SINE Alu 0 311 1 2239 138 0 0 chr9 97052398 97052709 -45218735 + AluSx SINE Alu 1 311 -1 2215 115 3 0 chr9 97052855 97053150 -45218294 - AluSx SINE Alu -11 301 6 260 229 10 94 chr9 97053378 97053474 -45217970 - L2 LINE L2 0 3272 3185 594 315 143 36 chr9 97053720 97054362 -45217082 - L2 LINE L2 -339 2975 2265 2399 110 0 0 chr9 97054509 97054817 -45216627 + AluSx SINE Alu 1 308 -4 320 368 107 34 chr9 97054849 97055381 -45216063 + L2 LINE L2 2199 2769 -545 1631 148 79 21 chr9 97055748 97055862 -45215582 + AluJb SINE Alu 1 107 -205 180 0 0 0 chr9 97055862 97055882 -45215562 + (CA)n Simple_repeat Simple_repeat 1 20 0 1631 148 79 21 chr9 97055882 97056057 -45215387 + AluJb SINE Alu 107 307 -5 296 281 48 7 chr9 97057082 97057228 -45214216 + LTR16A1 LTR ERVL 1 152 -305 1604 183 74 57 chr9 97057444 97057463 -45213981 + L1M4 LINE L1 4878 4895 -1283 1610 247 93 14 chr9 97057463 97057945 -45213499 - MLT2B1 LTR ERVL 0 520 1 1604 183 74 57 chr9 97057945 97058420 -45213024 + L1M4 LINE L1 4895 5381 -797 2667 74 0 0 chr9 97058420 97058731 -45212713 + AluY SINE Alu 1 311 0 1604 183 74 57 chr9 97058731 97058917 -45212527 + L1M4 LINE L1 5381 5562 -616 246 322 83 8 chr9 97059145 97059266 -45212178 - MIR SINE MIR -79 183 54 316 240 146 0 chr9 97059443 97059539 -45211905 - MER94 DNA DNA -23 111 2 606 291 175 23 chr9 97061525 97061868 -45209576 - LTR16C LTR ERVL -10 481 87 445 255 0 71 chr9 97062021 97062162 -45209282 + MLT1G LTR MaLR 163 293 -297 244 183 28 0 chr9 97062162 97062202 -45209242 + GA-rich Low_complexity Low_complexity 1 45 -28 2205 112 3 0 chr9 97062202 97062514 -45208930 + AluSx SINE Alu 1 312 0 244 183 28 0 chr9 97062514 97062544 -45208900 + GA-rich Low_complexity Low_complexity 45 73 0 341 240 294 25 chr9 97062564 97062768 -45208676 + MLT1G LTR MaLR 331 589 -1 982 199 0 0 chr9 97063153 97063314 -45208130 + FRAM SINE Alu 10 170 -6 183 156 0 0 chr9 97063314 97063346 -45208098 + GA-rich Low_complexity Low_complexity 1 32 0 1522 225 53 46 chr9 97063975 97064450 -45206994 + LTR16C LTR ERVL 11 488 -3 1034 219 9 0 chr9 97065054 97065273 -45206171 + MLT2B2 LTR ERVL 1 221 -294 31 44 0 0 chr9 97065415 97065460 -45205984 + AT_rich Low_complexity Low_complexity 1 45 0 234 192 0 0 chr9 97065911 97065963 -45205481 + CT-rich Low_complexity Low_complexity 2 53 0 25 0 0 0 chr9 97067223 97067248 -45204196 + GC_rich Low_complexity Low_complexity 1 25 0 385 191 101 0 chr9 97067925 97068014 -45203430 - MER69A DNA AcHobo -44 133 36 3883 90 48 48 chr9 97068309 97068941 -45202503 + LTR10E LTR ERV1 1 632 -1 1980 126 27 0 chr9 97069583 97069876 -45201568 - AluSc SINE Alu -8 301 1 1993 147 84 25 chr9 97071511 97071697 -45199747 - MLT1B LTR MaLR 0 390 217 1710 190 0 3 chr9 97071697 97072008 -45199436 - AluJo SINE Alu -2 310 1 1993 147 84 25 chr9 97072008 97072189 -45199255 - MLT1B LTR MaLR -173 217 1 260 250 76 104 chr9 97072517 97072661 -45198783 + MER5B DNA MER1_type 1 140 -38 2589 83 43 3 chr9 97072671 97073021 -45198423 + THE1B LTR MaLR 1 364 0 248 240 73 10 chr9 97073021 97073117 -45198327 + L1MC4 LINE L1 7931 8032 -10 2368 88 0 0 chr9 97073141 97073449 -45197995 - AluSg SINE Alu -2 308 1 846 301 96 26 chr9 97073700 97074126 -45197318 + L1ME3A LINE L1 5426 5881 -289 2057 86 11 4 chr9 97074165 97074467 -45196977 + AluSc SINE Alu 1 304 0 1964 89 0 0 chr9 97074926 97075197 -45196247 + AluY SINE Alu 40 310 -1 1784 108 0 0 chr9 97075490 97075741 -45195703 + AluSx SINE Alu 49 299 -13 21 57 0 0 chr9 97076355 97076390 -45195054 + AT_rich Low_complexity Low_complexity 1 35 0 1995 209 55 0 chr9 97076579 97077019 -45194425 - MLT1C LTR MaLR -3 464 1 2228 99 3 0 chr9 97077976 97078278 -45193166 + AluSq SINE Alu 1 303 -10 1106 132 32 42 chr9 97078287 97078476 -45192968 + MER5A DNA MER1_type 2 188 -1 311 321 9 0 chr9 97079026 97079135 -45192309 + L1M4 LINE L1 4781 4890 -1256 1017 214 62 24 chr9 97079150 97079486 -45191958 + LTR37A LTR ERV1 78 426 0 1414 173 10 58 chr9 97079732 97080044 -45191400 + AluJb SINE Alu 1 297 -15 744 254 96 55 chr9 97080295 97080692 -45190752 - MLT1J LTR MaLR 0 511 99 204 206 0 0 chr9 97080793 97080827 -45190617 + (TAG)n Simple_repeat Simple_repeat 2 35 0 342 329 101 32 chr9 97080849 97081007 -45190437 + MIR3 SINE MIR 1 169 -39 1622 189 121 31 chr9 97081278 97081732 -45189712 + MLT1D LTR MaLR 1 495 -10 6159 146 27 11 chr9 97081831 97083102 -45188342 + L1MA4 LINE L1 5008 6300 0 401 235 0 150 chr9 97083620 97083807 -45187637 + LTR16C LTR ERVL 161 319 -172 5586 111 43 15 chr9 97084019 97085580 -45185864 + L1PA13 LINE L1 4438 5954 -209 2159 104 0 7 chr9 97085580 97085878 -45185566 + AluSx SINE Alu 1 296 -16 207 0 0 0 chr9 97085881 97085904 -45185540 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5586 111 43 15 chr9 97085904 97086035 -45185409 + L1PA13 LINE L1 5955 6163 0 1960 115 7 0 chr9 97086282 97086586 -45184858 - AluSx SINE Alu 0 306 1 23 33 0 0 chr9 97086643 97086673 -45184771 + AT_rich Low_complexity Low_complexity 1 30 0 2179 97 10 0 chr9 97087543 97087843 -45183601 + AluSg SINE Alu 1 303 -7 355 281 246 20 chr9 97088783 97088986 -45182458 + MIR SINE MIR 2 250 -12 1269 250 106 20 chr9 97089012 97089464 -45181980 + LTR16C LTR ERVL 1 491 0 1689 133 14 14 chr9 97089891 97090176 -45181268 - AluJb SINE Alu -24 288 4 1642 146 32 21 chr9 97090218 97090526 -45180918 - AluJo SINE Alu 0 311 1 2074 138 0 0 chr9 97090863 97091174 -45180270 + AluSx SINE Alu 1 311 -1 2058 115 3 0 chr9 97091320 97091615 -45179829 - AluSx SINE Alu -11 301 6 656 298 149 42 chr9 97092185 97092827 -45178617 - L2 LINE L2 -339 2975 2265 2161 120 0 0 chr9 97092974 97093282 -45178162 + AluSx SINE Alu 1 308 -4 354 366 109 36 chr9 97093314 97093846 -45177598 + L2 LINE L2 2199 2769 -545 462 255 0 71 chr9 97094253 97094394 -45177050 + MLT1G LTR MaLR 163 293 -297 244 183 28 0 chr9 97094394 97094434 -45177010 + GA-rich Low_complexity Low_complexity 1 45 -28 2054 112 3 0 chr9 97094434 97094746 -45176698 + AluSx SINE Alu 1 312 0 244 183 28 0 chr9 97094746 97094776 -45176668 + GA-rich Low_complexity Low_complexity 45 73 0 370 221 294 25 chr9 97094796 97095000 -45176444 + MLT1G LTR MaLR 331 589 -1 901 206 6 0 chr9 97095371 97095546 -45175898 + FRAM SINE Alu 1 170 -6 183 156 0 0 chr9 97095546 97095578 -45175866 + GA-rich Low_complexity Low_complexity 1 32 0 191 302 206 0 chr9 97095964 97096090 -45175354 + MIR SINE MIR 80 231 -31 1574 221 53 46 chr9 97096207 97096682 -45174762 + LTR16C LTR ERVL 11 488 -3 2356 195 61 14 chr9 97097286 97097778 -45173666 + MLT2B2 LTR ERVL 1 515 0 231 36 0 0 chr9 97098259 97098287 -45173157 + (TA)n Simple_repeat Simple_repeat 2 29 0 514 178 188 0 chr9 97098287 97098388 -45173056 - FLAM_C SINE Alu -13 120 1 191 172 12 0 chr9 97100118 97100204 -45171240 + CT-rich Low_complexity Low_complexity 1 86 0 195 281 18 18 chr9 97100427 97100484 -45170960 + MIR SINE MIR 64 120 -88 25 83 0 0 chr9 97100777 97100837 -45170607 + AT_rich Low_complexity Low_complexity 1 60 0 2007 87 76 0 chr9 97100941 97101216 -45170228 - AluSg SINE Alu -14 296 1 1924 133 13 7 chr9 97101711 97102020 -45169424 - AluJb SINE Alu -1 311 1 229 109 43 0 chr9 97102678 97102724 -45168720 + GA-rich Low_complexity Low_complexity 1 48 0 2019 77 0 0 chr9 97103081 97103340 -45168104 - AluY SINE Alu -5 306 48 349 373 30 10 chr9 97104275 97104486 -45166958 + MIR SINE MIR 35 250 -12 802 240 45 0 chr9 97104856 97105056 -45166388 + MIR SINE MIR 50 258 -4 190 246 87 29 chr9 97105716 97105785 -45165659 - L2 LINE L2 -224 3048 2976 251 244 24 24 chr9 97105849 97105931 -45165513 - MIR SINE MIR -5 257 176 1920 123 3 13 chr9 97105959 97106285 -45165159 - AluSc SINE Alu 0 309 1 398 333 45 6 chr9 97106377 97106533 -45164911 - MIR SINE MIR -70 192 31 645 151 0 0 chr9 97106798 97106904 -45164540 - AluJo/FRAM SINE Alu 0 312 207 309 79 0 0 chr9 97106904 97106942 -45164502 - AluY SINE Alu -263 39 2 1179 238 92 58 chr9 97107117 97107639 -45163805 + MLT1F1 LTR MaLR 22 563 -4 2231 279 83 4 chr9 97107812 97108579 -45162865 + L2 LINE L2 1921 2748 -566 599 260 115 35 chr9 97108601 97108889 -45162555 + L2 LINE L2 2858 3168 -145 5168 192 55 23 chr9 97108902 97109915 -45161529 + L1MB7 LINE L1 4135 5114 -1070 224 0 65 0 chr9 97109915 97109946 -45161498 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5168 192 55 23 chr9 97109946 97110221 -45161223 + L1MB7 LINE L1 5114 5379 -805 1728 181 3 0 chr9 97110221 97110524 -45160920 - AluJb SINE Alu -8 304 1 5168 192 55 23 chr9 97110524 97111204 -45160240 + L1MB7 LINE L1 5379 6174 -10 282 287 87 27 chr9 97111208 97111358 -45160086 + L2 LINE L2 3155 3313 0 231 341 28 84 chr9 97112362 97112541 -45158903 - MER91A DNA MER1_type -1 195 27 2254 80 0 0 chr9 97112542 97112843 -45158601 + AluY SINE Alu 1 301 -10 838 285 69 20 chr9 97112908 97113315 -45158129 - LTR16C LTR ERVL -33 458 32 299 217 104 35 chr9 97113340 97113455 -45157989 + Charlie8 DNA MER1_type 90 212 -2205 24 53 0 0 chr9 97113650 97113688 -45157756 + AT_rich Low_complexity Low_complexity 1 38 0 633 273 70 7 chr9 97114330 97114627 -45156817 - MLT1G1 LTR MaLR -285 270 2 2205 294 44 17 chr9 97114894 97115557 -45155887 - MER115 DNA AcHobo 0 693 13 888 165 0 0 chr9 97115636 97115769 -45155675 - FLAM_C SINE Alu 0 133 1 579 259 43 0 chr9 97116001 97116140 -45155304 - MIR SINE MIR -98 164 20 387 282 103 60 chr9 97117062 97117508 -45153936 + MLT1H LTR MaLR 12 549 0 526 291 45 49 chr9 97118028 97118275 -45153169 + L2 LINE L2 2105 2350 -964 24 0 0 0 chr9 97118284 97118308 -45153136 + AT_rich Low_complexity Low_complexity 1 24 0 546 209 92 33 chr9 97118379 97118532 -45152912 + L2 LINE L2 2311 2472 -842 330 97 67 17 chr9 97118537 97118603 -45152841 - Alu SINE Alu -5 295 234 333 273 73 73 chr9 97118676 97118881 -45152563 + L2 LINE L2 2840 3044 -269 2312 58 7 3 chr9 97119267 97119577 -45151867 + AluY SINE Alu 1 311 0 658 299 102 16 chr9 97119838 97120142 -45151302 + MER102b DNA MER1_type 12 341 0 408 161 28 38 chr9 97120297 97120431 -45151013 - LTR16A1 LTR ERVL -3 454 280 461 266 84 4 chr9 97120997 97121234 -45150210 + LTR16B LTR ERVL 209 464 0 715 287 116 15 chr9 97121724 97121813 -45149631 + LTR16C LTR ERVL 1 80 -411 2950 177 10 17 chr9 97121813 97122199 -45149245 - L1PA16 LINE L1 -2 6164 5782 2355 71 0 0 chr9 97122199 97122496 -45148948 - AluY SINE Alu -14 297 1 2950 177 10 17 chr9 97122496 97122692 -45148752 - L1PA16 LINE L1 -384 5782 5586 715 287 116 15 chr9 97122692 97122937 -45148507 + LTR16C LTR ERVL 80 369 -122 343 230 190 10 chr9 97123212 97123312 -45148132 - MER5B DNA MER1_type 0 178 61 340 274 179 0 chr9 97123380 97123486 -45147958 - MER63 DNA MER1_type -85 751 1 327 314 64 21 chr9 97123661 97123849 -45147595 + MIR SINE MIR 56 251 -11 212 233 0 0 chr9 97125066 97125109 -45146335 - MIR SINE MIR -52 210 168 253 257 90 42 chr9 97125392 97125536 -45145908 + MER5A DNA MER1_type 16 166 -23 * 530 280 45 0 chr9 97125409 97125566 -45145878 - MER5A DNA MER1_type -25 164 1 932 125 8 148 chr9 97126365 97126621 -45144823 - AluJo SINE Alu -8 304 85 329 341 0 32 chr9 97127377 97127500 -45143944 - MIR SINE MIR -112 150 32 2196 98 7 7 chr9 97127902 97128209 -45143235 - AluSq SINE Alu -6 307 1 2058 102 10 10 chr9 97128752 97129055 -45142389 - AluSx SINE Alu -9 303 1 548 243 41 28 chr9 97130013 97130229 -45141215 + MIR3 SINE MIR 3 223 -39 513 225 166 43 chr9 97130240 97130427 -45141017 - MLT1K LTR MaLR -3 585 376 245 367 33 8 chr9 97130448 97130568 -45140876 - MLT1K LTR MaLR -358 230 108 1764 119 71 0 chr9 97130950 97131219 -45140225 + AluSx SINE Alu 6 293 -19 23 0 0 0 chr9 97132586 97132609 -45138835 + AT_rich Low_complexity Low_complexity 1 23 0 707 165 75 52 chr9 97132610 97132822 -45138622 - L1MA8 LINE L1 -7 6284 6068 1787 154 0 16 chr9 97133625 97133931 -45137513 + AluJo SINE Alu 1 301 -11 1343 255 136 24 chr9 97134689 97134800 -45136644 - L2 LINE L2 -25 3288 3191 3509 125 27 32 chr9 97134800 97135361 -45136083 + MER4A LTR ERV1 1 560 -40 2190 88 3 0 chr9 97135361 97135646 -45135798 - AluSx SINE Alu -15 297 12 3509 125 27 32 chr9 97135646 97135685 -45135759 + MER4A LTR ERV1 560 598 -2 1343 255 136 24 chr9 97135685 97136548 -45134896 - L2 LINE L2 -122 3191 2210 217 211 46 158 chr9 97136954 97137106 -45134338 + MIR SINE MIR 125 259 -3 592 289 51 45 chr9 97137818 97138150 -45133294 + Charlie2b DNA MER1_type 1 334 -2448 406 292 93 11 chr9 97138204 97138549 -45132895 - LTR16A LTR ERVL -11 439 1 708 308 42 23 chr9 97138568 97138831 -45132613 + Charlie2b DNA MER1_type 404 671 -2111 239 119 0 24 chr9 97138901 97138943 -45132501 + Tigger1 DNA MER2_type 9 49 -2369 15088 115 30 19 chr9 97138943 97139160 -45132284 + Tigger1 DNA MER2_type 26 239 -2179 1966 130 7 0 chr9 97139160 97139459 -45131985 - AluSx SINE Alu -11 301 1 15088 115 30 19 chr9 97139459 97140362 -45131082 + Tigger1 DNA MER2_type 239 1130 -1288 2209 96 0 3 chr9 97140362 97140663 -45130781 + AluSg SINE Alu 1 300 -10 15088 115 30 19 chr9 97140663 97141885 -45129559 + Tigger1 DNA MER2_type 1130 2396 -22 3607 198 122 50 chr9 97141959 97142178 -45129266 + Charlie2a DNA MER1_type 1467 1669 -1193 1078 169 0 0 chr9 97142178 97142356 -45129088 + L1MB7 LINE L1 5988 6165 -19 3607 198 122 50 chr9 97142356 97143397 -45128047 + Charlie2a DNA MER1_type 1669 2818 -44 218 222 83 28 chr9 97145551 97145623 -45125821 + MIR SINE MIR 78 153 -109 2293 177 30 21 chr9 97146401 97146831 -45124613 + Tigger2a DNA MER2_type 1 434 0 1720 170 0 30 chr9 97146920 97147220 -45124224 - AluJo SINE Alu -21 291 1 416 258 73 53 chr9 97147932 97148083 -45123361 - MLT1J2 LTR MaLR 0 450 297 949 212 22 35 chr9 97149178 97149409 -45122035 + Charlie8 DNA MER1_type 49 276 -2141 643 299 123 14 chr9 97149838 97150203 -45121241 - L2 LINE L2 -1485 1829 1425 640 255 26 57 chr9 97150291 97150483 -45120961 + MER91A DNA MER1_type 10 195 -1 562 267 162 5 chr9 97151195 97151405 -45120039 + MIR SINE MIR 11 253 -9 2150 118 0 19 chr9 97151581 97151896 -45119548 + AluSc SINE Alu 1 309 0 2164 137 121 0 chr9 97152095 97152475 -45118969 + MSTA LTR MaLR 1 426 -2 376 341 50 22 chr9 97153534 97153716 -45117728 + MER5A DNA MER1_type 3 189 0 1107 154 0 0 chr9 97153795 97153964 -45117480 - AluJb SINE Alu -6 306 138 191 326 23 12 chr9 97153981 97154067 -45117377 - MER5A DNA MER1_type -77 112 26 255 233 0 0 chr9 97154787 97154847 -45116597 - HAL1 LINE L1 0 2507 2448 * 525 277 98 24 chr9 97154836 97155212 -45116232 - HAL1 LINE L1 -1191 1316 913 1172 163 91 88 chr9 97155427 97155746 -45115698 + MER33 DNA MER1_type 5 324 0 636 269 70 22 chr9 97155823 97156094 -45115350 - HAL1 LINE L1 -2214 293 10 1358 205 86 31 chr9 97156172 97156523 -45114921 - MLT1A2 LTR MaLR -4 370 1 2301 237 65 27 chr9 97156667 97156975 -45114469 + L1P4 LINE L1 4617 4912 -1262 195 42 0 0 chr9 97156975 97156999 -45114445 + (TA)n Simple_repeat Simple_repeat 2 25 0 2301 237 65 27 chr9 97156999 97157563 -45113881 + L1P4 LINE L1 4912 5513 -661 1505 96 0 5 chr9 97157625 97157857 -45113587 + AluY SINE Alu 77 307 0 259 393 60 30 chr9 97159091 97159259 -45112185 + L2 LINE L2 3097 3269 -3 366 210 125 75 chr9 97159284 97159579 -45111865 + L1ME4a LINE L1 5811 6120 -1 322 291 39 0 chr9 97159683 97159810 -45111634 - MIR SINE MIR -28 234 103 1099 189 46 0 chr9 97160256 97160452 -45110992 - MER58A DNA MER1_type -9 215 11 1502 203 122 41 chr9 97160452 97160841 -45110603 - MLT1D LTR MaLR 0 505 70 2079 110 0 3 chr9 97160841 97161132 -45110312 - AluSc SINE Alu -19 290 1 1502 203 122 41 chr9 97161132 97161209 -45110235 - MLT1D LTR MaLR -435 70 1 483 368 16 11 chr9 97161253 97161443 -45110001 + MIR3 SINE MIR 17 207 -1 529 300 168 12 chr9 97162025 97162275 -45109169 - L2 LINE L2 0 3313 3025 389 325 8 0 chr9 97162899 97163025 -45108419 - L2 LINE L2 -559 2755 2629 820 236 157 25 chr9 97163238 97163518 -45107926 - ERVL-B1 LTR ERVL -5446 318 2 1718 228 85 3 chr9 97163519 97163963 -45107481 - MLT2B1 LTR ERVL 0 554 1 710 239 127 15 chr9 97164028 97164225 -45107219 - MER58A DNA MER1_type 0 224 6 389 205 41 57 chr9 97164242 97164364 -45107080 - MER103 DNA DNA -45 121 2 487 315 236 31 chr9 97164765 97165336 -45106108 - L3 LINE CR1 -773 804 117 31 76 0 0 chr9 97165659 97165725 -45105719 + AT_rich Low_complexity Low_complexity 1 66 0 292 238 113 87 chr9 97166727 97166912 -45104532 - MLT1J1 LTR MaLR -2 444 255 22 35 0 0 chr9 97166945 97166974 -45104470 + AT_rich Low_complexity Low_complexity 1 29 0 356 234 9 19 chr9 97166993 97167100 -45104344 - L1MC4a LINE L1 -70 7738 7633 197 306 149 16 chr9 97168739 97168860 -45102584 - L2 LINE L2 0 3272 3136 25 51 0 0 chr9 97169273 97169312 -45102132 + AT_rich Low_complexity Low_complexity 1 39 0 3991 119 23 0 chr9 97170191 97170797 -45100647 - L1PA16 LINE L1 -1 6165 5546 600 241 134 104 chr9 97171559 97171829 -45099615 - MER114 LTR ERV 0 648 388 2120 115 0 26 chr9 97171829 97172133 -45099311 - AluSx SINE Alu -16 296 1 2480 67 3 0 chr9 97172138 97172436 -45099008 - AluY SINE Alu -12 299 1 600 241 134 104 chr9 97172436 97172786 -45098658 - MER114 LTR ERV -263 385 3 1909 110 59 4 chr9 97172800 97173073 -45098371 + AluSx SINE Alu 1 288 -24 254 263 95 0 chr9 97173576 97173671 -45097773 - MLT1J LTR MaLR 0 511 408 5316 149 51 41 chr9 97173848 97174880 -45096564 - L1MC1 LINE L1 -1 6332 5290 1320 148 0 70 chr9 97174892 97175136 -45096308 - AluJb SINE Alu 0 312 86 5573 217 20 27 chr9 97175136 97176565 -45094879 - L1MC1 LINE L1 -842 5304 3886 603 257 74 35 chr9 97176578 97176780 -45094664 - MLT1J LTR MaLR -301 210 1 2244 120 7 0 chr9 97177209 97177517 -45093927 + AluSg SINE Alu 1 310 0 183 349 24 0 chr9 97178051 97178134 -45093310 - L2 LINE L2 0 3272 3188 264 296 0 12 chr9 97178775 97178856 -45092588 - MIR3 SINE MIR -41 167 88 247 241 268 9 chr9 97178871 97178983 -45092461 + MER5A DNA MER1_type 49 189 0 281 225 11 0 chr9 97179191 97179280 -45092164 + GA-rich Low_complexity Low_complexity 3 92 0 1345 224 146 48 chr9 97179688 97180199 -45091245 - MLT1F1 LTR MaLR -7 560 1 1556 171 46 4 chr9 97180336 97180616 -45090828 - AluJb SINE Alu -20 292 1 1660 184 25 0 chr9 97180855 97181132 -45090312 + AluJb SINE Alu 14 297 -15 406 315 80 33 chr9 97181261 97181623 -45089821 - L2 LINE L2 -23 3249 2871 335 241 88 36 chr9 97182054 97182191 -45089253 + L2 LINE L2 2859 3002 -311 493 164 262 8 chr9 97182195 97182317 -45089127 - MER45C DNA AcHobo -1 952 800 1828 162 7 7 chr9 97182329 97182613 -45088831 - AluJb SINE Alu -28 284 1 253 269 0 0 chr9 97182616 97182668 -45088776 + LTR30 LTR ERV1 1 52 -670 997 152 12 41 chr9 97182668 97182928 -45088516 + LTR12 LTR ERV1 53 235 -479 276 269 34 25 chr9 97183015 97183134 -45088310 + LTR30 LTR ERV1 524 643 -79 513 139 0 74 chr9 97183136 97183244 -45088200 + LTR12 LTR ERV1 615 714 0 416 258 11 0 chr9 97183244 97183337 -45088107 - MER45C DNA AcHobo -138 815 722 749 267 0 48 chr9 97183448 97183566 -45087878 - MER45C DNA AcHobo -775 178 71 2306 78 13 39 chr9 97183566 97183875 -45087569 - AluSg SINE Alu -9 301 1 749 267 0 48 chr9 97183875 97183943 -45087501 - MER45C DNA AcHobo -882 71 1 335 232 176 8 chr9 97184077 97184202 -45087242 + L2 LINE L2 3168 3313 0 1609 202 67 59 chr9 97185333 97185828 -45085616 - L1M4 LINE L1 -2920 3226 2728 596 306 78 26 chr9 97187229 97187615 -45083829 - LTR16A LTR ERVL -11 439 34 399 264 40 14 chr9 97189340 97189488 -45081956 - L1ME4a LINE L1 -4 6117 5966 3457 125 25 0 chr9 97189934 97190446 -45080998 + L1PA16 LINE L1 5633 6157 -9 1039 185 63 108 chr9 97191818 97192169 -45079275 - MLT1A1 LTR MaLR 0 365 31 21 36 0 0 chr9 97192310 97192338 -45079106 + AT_rich Low_complexity Low_complexity 1 28 0 1649 227 26 21 chr9 97194092 97194479 -45076965 - MSTD LTR MaLR -7 389 1 236 238 40 124 chr9 97194486 97194688 -45076756 - L1P LINE L1 -2355 3791 3607 1998 118 0 0 chr9 97195023 97195295 -45076149 + AluSx SINE Alu 37 308 -4 411 286 23 8 chr9 97195343 97195476 -45075968 + MIR SINE MIR 53 187 -75 7280 173 171 15 chr9 97195530 97197049 -45074395 - MER52A LTR ERV1 0 1755 1 5224 127 94 38 chr9 97198128 97199215 -45072229 + pTR5 LTR ERV1 743 2025 -413 285 255 31 20 chr9 97199215 97199313 -45072131 + LTR30 LTR ERV1 544 642 -80 1305 122 56 0 chr9 97199314 97199511 -45071933 + LTR12 LTR ERV1 377 584 -130 552 281 36 0 chr9 97199741 97199880 -45071564 - MER63A DNA MER1_type -9 201 58 599 271 82 49 chr9 97200059 97200388 -45071056 + MLT1K LTR MaLR 1 340 -248 3204 198 44 22 chr9 97200388 97201549 -45069895 + L1MA9 LINE L1 4774 6041 -250 1566 89 243 4 chr9 97201549 97201796 -45069648 + AluSg1 SINE Alu 1 306 -3 3204 198 44 22 chr9 97201796 97202052 -45069392 + L1MA9 LINE L1 6041 6290 -1 304 222 40 61 chr9 97202182 97202281 -45069163 + MLT1K LTR MaLR 464 560 -28 2604 215 30 19 chr9 97203747 97204254 -45067190 - MER119 DNA MER1_type 0 583 68 1574 168 0 101 chr9 97204254 97204582 -45066862 + AluSg SINE Alu 1 295 -15 2604 215 30 19 chr9 97204582 97204651 -45066793 - MER119 DNA MER1_type -515 68 1 5934 113 6 7 chr9 97205647 97205683 -45065761 + L1PA15 LINE L1 5285 5320 -870 2282 100 10 0 chr9 97205683 97205982 -45065462 + AluSp SINE Alu 12 313 0 5934 113 6 7 chr9 97205982 97206852 -45064592 + L1PA15 LINE L1 5320 6190 0 559 259 17 6 chr9 97207119 97207293 -45064151 - L1MD3 LINE L1 -24 7971 7796 425 291 50 6 chr9 97207303 97207485 -45063959 - MER117 DNA MER1_type -3 194 5 237 130 246 29 chr9 97207872 97207941 -45063503 - MLT1I LTR MaLR -6 403 320 2368 77 3 7 chr9 97207977 97208274 -45063170 + AluSq SINE Alu 1 296 -17 186 196 0 87 chr9 97209003 97209049 -45062395 + L2 LINE L2 3261 3302 -11 230 333 11 33 chr9 97209568 97209658 -45061786 + L2 LINE L2 2769 2856 -458 185 286 0 0 chr9 97209680 97209722 -45061722 + L2 LINE L2 3158 3199 -73 2464 60 13 7 chr9 97209999 97210299 -45061145 + AluSg SINE Alu 1 302 -8 204 319 64 11 chr9 97210314 97210408 -45061036 + L2 LINE L2 3180 3278 -35 357 217 14 0 chr9 97211701 97211788 -45059656 - MLT1H1 LTR MaLR -287 268 195 573 231 8 15 chr9 97211857 97211991 -45059453 - MLT1H1 LTR MaLR -379 176 44 1011 244 103 12 chr9 97212140 97212460 -45058984 + MLT1I LTR MaLR 61 409 0 2106 130 7 0 chr9 97212619 97212920 -45058524 - AluSx SINE Alu -8 304 2 812 194 48 21 chr9 97213085 97213271 -45058173 - AluJo SINE Alu -4 308 118 385 264 25 50 chr9 97213534 97213577 -45057867 + L2 LINE L2 3117 3160 -112 2522 106 11 21 chr9 97213577 97213956 -45057488 + THE1C LTR MaLR 1 375 0 385 264 25 50 chr9 97213956 97214033 -45057411 + L2 LINE L2 3160 3234 -38 27 0 0 0 chr9 97214170 97214197 -45057247 + AT_rich Low_complexity Low_complexity 1 27 0 284 313 51 41 chr9 97214785 97214980 -45056464 + MLT1K LTR MaLR 184 380 -208 186 379 11 11 chr9 97215462 97215549 -45055895 - L2 LINE L2 -70 3202 3116 28656 27 16 1 chr9 97215564 97221567 -45049877 + L1HS LINE L1 7 6139 -16 197 33 33 0 chr9 97221567 97221597 -45049847 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 508 216 0 0 chr9 97221747 97221835 -45049609 + Tigger2 DNA MER2_type 2627 2714 -4 405 86 0 0 chr9 97221837 97221895 -45049549 + (TG)n Simple_repeat Simple_repeat 1 58 0 240 265 48 0 chr9 97221895 97221978 -45049466 - L1ME LINE L1 -233 5888 5802 2458 59 0 0 chr9 97222444 97222748 -45048696 - AluY SINE Alu -7 304 1 296 289 10 39 chr9 97222884 97222988 -45048456 - MIR SINE MIR -102 160 60 391 305 53 20 chr9 97223007 97223158 -45048286 - MER63B DNA MER1_type -264 172 17 1407 172 27 40 chr9 97223209 97223506 -45047938 - AluJo SINE Alu -19 293 1 188 296 0 0 chr9 97223652 97223696 -45047748 + MER5A DNA MER1_type 5 48 -141 1082 150 0 10 chr9 97223740 97224040 -45047404 + (CCA)n Simple_repeat Simple_repeat 1 296 0 320 219 16 0 chr9 97224042 97224106 -45047338 + MER5A DNA MER1_type 28 92 -97 252 324 73 64 chr9 97224593 97224797 -45046647 - L2 LINE L2 -8 3264 3059 294 95 0 0 chr9 97225929 97225971 -45045473 + (CA)n Simple_repeat Simple_repeat 1 42 0 382 286 120 23 chr9 97226970 97227145 -45044299 - MIR SINE MIR -59 203 12 190 189 54 0 chr9 97227195 97227232 -45044212 + MIR SINE MIR 221 259 -3 241 222 335 12 chr9 97227529 97227696 -45043748 + L2 LINE L2 3083 3303 -10 511 276 80 32 chr9 97228044 97228294 -45043150 - L2 LINE L2 -5 3308 3047 1847 151 0 28 chr9 97229777 97230094 -45041350 - AluSx SINE Alu -4 308 1 560 234 14 21 chr9 97230699 97230844 -45040600 + MLT1G1 LTR MaLR 442 585 -10 860 159 0 0 chr9 97231217 97231355 -45040089 + FRAM SINE Alu 1 138 -38 598 269 157 0 chr9 97231604 97231827 -45039617 + Charlie2 DNA MER1_type 65 322 -2540 21 36 0 0 chr9 97231998 97232026 -45039418 + AT_rich Low_complexity Low_complexity 1 28 0 810 259 100 29 chr9 97232073 97232493 -45038951 - LTR16A LTR ERVL 0 450 1 325 247 0 11 chr9 97232493 97232581 -45038863 + Charlie2 DNA MER1_type 2704 2790 -72 2244 78 10 3 chr9 97232609 97232915 -45038529 - AluY SINE Alu -3 308 1 2026 115 34 3 chr9 97233004 97233299 -45038145 - AluSx SINE Alu -8 304 1 1277 278 56 12 chr9 97233321 97233752 -45037692 + MLT1J2 LTR MaLR 1 450 0 430 305 100 31 chr9 97234014 97234273 -45037171 - MLT1J LTR MaLR 0 511 235 556 264 119 13 chr9 97234522 97234757 -45036687 + LTR16C LTR ERVL 232 491 0 398 294 54 44 chr9 97234771 97234975 -45036469 - MLT1J LTR MaLR -296 215 10 1226 121 116 0 chr9 97235559 97235749 -45035695 + MER30 DNA MER1_type 19 230 0 682 124 0 0 chr9 97236086 97236183 -45035261 - LTR12 LTR ERV1 -1 713 617 388 217 28 19 chr9 97236183 97236289 -45035155 - LTR30 LTR ERV1 -70 652 546 694 205 74 42 chr9 97236294 97236509 -45034935 - LTR12 LTR ERV1 -440 274 53 266 250 0 0 chr9 97236509 97236561 -45034883 - LTR30 LTR ERV1 -670 52 1 313 285 65 75 chr9 97236746 97236932 -45034512 + MLT1L LTR MaLR 197 380 -235 2673 123 5 3 chr9 97236945 97237320 -45034124 + MER48 LTR ERV1 12 387 0 263 319 73 11 chr9 97237341 97237532 -45033912 + MLT1L LTR MaLR 407 609 -6 2340 72 3 0 chr9 97238240 97238544 -45032900 - AluY SINE Alu -6 305 1 510 301 83 5 chr9 97239942 97240158 -45031286 - L1MC/D LINE L1 -2099 5709 5477 457 284 185 33 chr9 97240305 97240548 -45030896 - L2 LINE L2 0 3272 2993 206 229 0 0 chr9 97240557 97240605 -45030839 + (TG)n Simple_repeat Simple_repeat 2 49 0 594 161 50 129 chr9 97241311 97241327 -45030117 - LTR37A LTR ERV1 -13 413 397 2278 89 0 0 chr9 97241327 97241618 -45029826 + AluSx SINE Alu 1 291 -21 594 161 50 129 chr9 97241618 97241744 -45029700 - LTR37A LTR ERV1 -29 397 343 1373 98 5 0 chr9 97241744 97241928 -45029516 + L1PA16 LINE L1 5973 6157 -9 594 161 50 129 chr9 97241928 97242064 -45029380 - LTR37A LTR ERV1 -83 343 198 1383 288 94 11 chr9 97242941 97243462 -45027982 - MLT2E LTR ERVL 0 628 65 210 250 28 14 chr9 97243894 97243966 -45027478 + CT-rich Low_complexity Low_complexity 6 78 0 463 208 47 28 chr9 97244235 97244341 -45027103 - MER103 DNA DNA -57 109 2 467 224 239 0 chr9 97245020 97245154 -45026290 - MER5A DNA MER1_type -1 188 23 276 264 0 28 chr9 97245238 97245310 -45026134 + CT-rich Low_complexity Low_complexity 3 72 0 610 269 121 31 chr9 97245877 97246267 -45025177 - L1ME4a LINE L1 -82 6039 5615 274 306 140 25 chr9 97246414 97246571 -45024873 + MIR SINE MIR 88 262 0 22 0 0 0 chr9 97247134 97247156 -45024288 + GC_rich Low_complexity Low_complexity 1 22 0 284 172 35 0 chr9 97247579 97247637 -45023807 - MER58B DNA MER1_type -1 340 281 2673 127 24 93 chr9 97247642 97248147 -45023297 + LTR12 LTR ERV1 1 470 -244 405 210 59 50 chr9 97248149 97248268 -45023176 - MER58B DNA MER1_type -54 287 168 27 29 0 0 chr9 97248335 97248369 -45023075 + AT_rich Low_complexity Low_complexity 1 34 0 2119 97 10 0 chr9 97248740 97249039 -45022405 + AluSg SINE Alu 9 310 0 824 242 35 68 chr9 97249296 97249603 -45021841 - MLT1J LTR MaLR -52 459 113 2300 86 0 0 chr9 97249603 97249904 -45021540 - AluSc SINE Alu -8 301 1 824 242 35 68 chr9 97249904 97249999 -45021445 - MLT1J LTR MaLR -398 113 16 308 313 20 27 chr9 97250126 97250273 -45021171 - L2 LINE L2 -219 3053 2908 263 348 67 0 chr9 97252097 97252232 -45019212 + MIR3 SINE MIR 3 146 -62 278 309 49 127 chr9 97253647 97253954 -45017490 + L2 LINE L2 2970 3252 -20 2503 65 0 0 chr9 97254064 97254373 -45017071 - AluY SINE Alu -2 309 1 428 319 99 6 chr9 97254565 97254747 -45016697 - MIR SINE MIR -24 238 40 1053 191 85 4 chr9 97254824 97255060 -45016384 - MIR SINE MIR 0 262 8 2193 100 6 0 chr9 97255621 97255932 -45015512 - AluSp SINE Alu 0 313 1 1260 278 34 46 chr9 97256301 97256797 -45014647 - LTR33 LTR ERVL -12 509 20 2307 90 0 6 chr9 97256928 97257239 -45014205 + AluSc SINE Alu 1 309 0 1472 167 0 57 chr9 97257742 97258041 -45013403 + AluJo SINE Alu 1 282 -30 370 120 27 0 chr9 97258822 97258897 -45012547 + CT-rich Low_complexity Low_complexity 2 78 0 445 237 153 31 chr9 97259106 97259334 -45012110 - MER112 DNA MER1_type 0 256 1 304 196 0 155 chr9 97260029 97260126 -45011318 - L2 LINE L2 -10 3303 3222 243 286 68 30 chr9 97260363 97260496 -45010948 - L2 LINE L2 -509 2805 2668 494 280 80 62 chr9 97262169 97262444 -45009000 + L1M4 LINE L1 5120 5399 -747 1985 125 6 3 chr9 97262603 97262914 -45008530 - AluSx SINE Alu 0 312 1 1057 273 106 14 chr9 97263894 97264261 -45007183 + LTR16C LTR ERVL 86 486 -5 481 284 5 71 chr9 97264509 97264706 -45006738 + L2 LINE L2 2352 2535 -779 2372 186 28 40 chr9 97264706 97265205 -45006239 - Tigger5 DNA MER2_type 0 2323 1831 577 203 47 14 chr9 97265209 97265357 -45006087 + MER97b DNA MER1_type? 595 747 -306 263 119 0 0 chr9 97265345 97265387 -45006057 + Tigger5 DNA MER2_type 2093 2134 -189 * 1076 205 25 10 chr9 97265395 97265595 -45005849 - Tigger5 DNA MER2_type -2120 203 1 575 241 30 0 chr9 97265595 97265728 -45005716 + L2 LINE L2 2534 2670 -644 249 162 0 0 chr9 97265730 97265767 -45005677 - MER58B DNA MER1_type 0 341 305 816 204 120 120 chr9 97265802 97266003 -45005441 - MER58B DNA MER1_type -2113 307 104 1510 148 68 14 chr9 97266003 97266281 -45005163 + AluJo SINE Alu 1 293 -19 816 204 120 120 chr9 97266281 97266378 -45005066 - MER58B DNA MER1_type -2315 105 9 339 277 163 38 chr9 97266524 97266708 -45004736 + L2 LINE L2 3107 3313 0 2541 217 94 34 chr9 97266935 97266965 -45004479 - MER97a DNA MER1_type? -12 882 855 1520 187 3 23 chr9 97266965 97267265 -45004179 - AluJb SINE Alu -18 294 1 2541 217 94 34 chr9 97267265 97267991 -45003453 - MER97a DNA MER1_type? -39 855 81 1828 157 0 0 chr9 97268011 97268298 -45003146 - AluJo SINE Alu -25 287 1 227 200 114 0 chr9 97268304 97268374 -45003070 - MER97c DNA MER1_type? -999 91 14 22 56 0 0 chr9 97268577 97268613 -45002831 + AT_rich Low_complexity Low_complexity 1 36 0 234 172 11 98 chr9 97269337 97269511 -45001933 + GA-rich Low_complexity Low_complexity 3 161 0 189 133 0 76 chr9 97269521 97269626 -45001818 + (GGGA)n Simple_repeat Simple_repeat 1 97 0 327 116 0 101 chr9 97269638 97269836 -45001608 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 223 129 0 57 chr9 97269916 97269986 -45001458 + (GGGA)n Simple_repeat Simple_repeat 2 67 0 413 266 78 16 chr9 97270983 97271111 -45000333 + MIR SINE MIR 119 254 -8 864 176 128 0 chr9 97271400 97271588 -44999856 + MER20 DNA MER1_type 4 215 -4 192 356 67 22 chr9 97273958 97274048 -44997396 - L2 LINE L2 -952 2362 2269 529 250 23 31 chr9 97274230 97274358 -44997086 - MIR SINE MIR -111 151 25 610 284 13 13 chr9 97275715 97275870 -44995574 + MIR3 SINE MIR 38 192 -16 834 153 0 0 chr9 97275968 97276099 -44995345 - AluJb SINE Alu -95 217 87 2139 112 0 0 chr9 97276105 97276410 -44995034 - AluY SINE Alu -6 305 1 1877 154 7 0 chr9 97276600 97276906 -44994538 - AluJo SINE Alu -2 310 3 2165 92 3 0 chr9 97276949 97277241 -44994203 + AluY SINE Alu 3 295 -16 372 223 161 15 chr9 97277262 97277392 -44994052 + MARNA DNA Mariner 244 392 -194 21 0 0 0 chr9 97277504 97277525 -44993919 + AT_rich Low_complexity Low_complexity 1 21 0 1242 199 61 43 chr9 97277759 97278135 -44993309 - MER39 LTR ERV1 0 707 325 259 277 44 73 chr9 97278135 97278272 -44993172 - MER39 LTR ERV1 -571 136 4 297 186 0 128 chr9 97278274 97278311 -44993133 + MER5B DNA MER1_type 29 50 -128 2213 84 3 3 chr9 97278311 97278608 -44992836 + AluSg SINE Alu 1 297 -13 297 186 0 128 chr9 97278608 97278656 -44992788 + MER5B DNA MER1_type 50 103 -75 249 33 0 0 chr9 97278676 97278706 -44992738 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1631 170 3 33 chr9 97279561 97279867 -44991577 - AluJo SINE Alu -15 297 1 650 263 21 64 chr9 97280071 97280156 -44991288 + MIR SINE MIR 10 97 -165 533 270 0 0 chr9 97280156 97280267 -44991177 + MER81 DNA DNA 3 113 -1 650 263 21 64 chr9 97280267 97280417 -44991027 + MIR SINE MIR 97 235 -27 332 262 39 39 chr9 97281086 97281189 -44990255 - L2 LINE L2 -6 3307 3205 242 274 0 0 chr9 97281204 97281266 -44990178 - L2 LINE L2 0 3313 3252 1998 138 3 6 chr9 97281319 97281631 -44989813 + AluSx SINE Alu 1 311 -1 251 175 0 0 chr9 97281806 97281846 -44989598 - MIR SINE MIR -113 149 110 717 199 54 6 chr9 97281902 97282068 -44989376 + MER20 DNA MER1_type 46 219 0 2178 164 10 28 chr9 97282378 97282775 -44988669 + MLT1B LTR MaLR 1 390 0 255 61 0 0 chr9 97283296 97283329 -44988115 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 1706 101 4 0 chr9 97283802 97284040 -44987404 + AluSx SINE Alu 1 239 -73 1099 243 196 43 chr9 97284489 97285003 -44986441 + MLT1E LTR MaLR 1 593 0 1912 127 0 29 chr9 97285353 97285660 -44985784 - AluSq SINE Alu -15 298 1 452 299 8 98 chr9 97285682 97285916 -44985528 + L2 LINE L2 3099 3311 -2 2108 104 3 7 chr9 97286017 97286315 -44985129 + AluSx SINE Alu 1 297 -15 2023 151 43 3 chr9 97286456 97286807 -44984637 + MLT1A1 LTR MaLR 1 365 0 2090 89 7 33 chr9 97286832 97287136 -44984308 + AluSq SINE Alu 1 296 -17 440 206 20 10 chr9 97287413 97287515 -44983929 + MLT1K LTR MaLR 140 242 -346 269 208 57 132 chr9 97287486 97287592 -44983852 + MLT1K LTR MaLR 145 242 -346 * 349 278 10 0 chr9 97287563 97287660 -44983784 + MLT1K LTR MaLR 145 242 -346 * 412 255 10 0 chr9 97287631 97287733 -44983711 + MLT1K LTR MaLR 145 247 -341 938 319 72 18 chr9 97287762 97288151 -44983293 + MLT1K LTR MaLR 139 548 -40 303 217 313 0 chr9 97289160 97289275 -44982169 + MER5A DNA MER1_type 33 183 -6 189 154 0 0 chr9 97289694 97289733 -44981711 + (TG)n Simple_repeat Simple_repeat 2 40 0 306 0 0 0 chr9 97290280 97290314 -44981130 + (CA)n Simple_repeat Simple_repeat 2 35 0 251 247 32 75 chr9 97291496 97291589 -44979855 + MIR SINE MIR 98 186 -76 393 256 42 78 chr9 97291939 97292011 -44979433 + MIR SINE MIR 79 152 -110 213 39 0 0 chr9 97292011 97292037 -44979407 + (CAA)n Simple_repeat Simple_repeat 2 27 0 393 256 42 78 chr9 97292037 97292155 -44979289 + MIR SINE MIR 152 262 0 225 233 0 0 chr9 97292227 97292270 -44979174 - L2 LINE L2 0 3272 3230 2845 142 81 15 chr9 97292273 97292801 -44978643 + MER34B LTR ERV1 3 565 0 885 267 121 13 chr9 97293098 97293487 -44977957 - MLT1J LTR MaLR -71 440 10 192 295 211 0 chr9 97294736 97294831 -44976613 + MIR3 SINE MIR 47 161 -47 353 304 206 0 chr9 97295288 97295462 -44975982 + HAL1 LINE L1 2272 2491 -16 1415 214 82 80 chr9 97295462 97295972 -44975472 - MLT1J LTR MaLR 0 511 1 353 304 206 0 chr9 97295972 97295991 -44975453 + HAL1 LINE L1 2491 2505 -2 200 265 82 0 chr9 97296820 97296869 -44974575 - L2 LINE L2 0 3313 3261 1455 81 45 0 chr9 97297754 97297997 -44973447 - AluSp SINE Alu 0 330 79 221 0 35 0 chr9 97298430 97298459 -44972985 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 254 404 47 6 chr9 97299151 97299322 -44972122 + MIR SINE MIR 77 254 -8 28 0 0 0 chr9 97299322 97299350 -44972094 + AT_rich Low_complexity Low_complexity 1 28 0 348 64 0 0 chr9 97299473 97299520 -44971924 + (CA)n Simple_repeat Simple_repeat 2 48 0 226 255 60 90 chr9 97299738 97299883 -44971561 + MIR SINE MIR 1 188 -74 2265 93 0 7 chr9 97299883 97300193 -44971251 + AluSc SINE Alu 1 308 -1 226 255 60 90 chr9 97300193 97300238 -44971206 + MIR SINE MIR 188 233 -29 225 0 0 0 chr9 97300537 97300562 -44970882 + (TG)n Simple_repeat Simple_repeat 2 26 0 336 238 57 9 chr9 97300877 97300982 -44970462 - MER103 DNA DNA -1 165 56 486 250 119 41 chr9 97300990 97301072 -44970372 + MLT1L LTR MaLR 3 77 -538 1889 88 47 11 chr9 97301072 97301346 -44970098 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr9 97301351 97301380 -44970064 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 486 250 119 41 chr9 97301380 97301535 -44969909 + MLT1L LTR MaLR 80 265 -350 449 279 64 29 chr9 97302925 97303097 -44968347 - MIR SINE MIR -70 192 15 662 269 11 5 chr9 97304094 97304280 -44967164 + MER117 DNA MER1_type 9 195 -2 338 220 34 59 chr9 97304960 97305078 -44966366 - MLT1L LTR MaLR -5 610 496 315 304 32 8 chr9 97305433 97305558 -44965886 + MIR SINE MIR 127 254 -8 1750 123 4 0 chr9 97305677 97305946 -44965498 - AluSg SINE Alu -8 302 33 4535 138 43 18 chr9 97307163 97307597 -44963847 - L1MA9 LINE L1 -38 6274 5852 1927 89 3 28 chr9 97307597 97307879 -44963565 - AluSx SINE Alu -37 275 1 4535 138 43 18 chr9 97307879 97308278 -44963166 - L1MA9 LINE L1 -460 5852 5420 991 137 64 44 chr9 97308316 97308520 -44962924 - MER3 DNA MER1_type -1 208 1 1463 183 8 4 chr9 97308534 97308821 -44962623 - AluJo SINE Alu 0 309 22 676 219 27 14 chr9 97308826 97308972 -44962472 - AluJo SINE Alu -161 151 4 228 214 0 0 chr9 97308976 97309018 -44962426 + MER5A DNA MER1_type 5 46 -143 262 224 41 10 chr9 97309199 97309297 -44962147 + L1ME LINE L1 5768 5868 -253 799 281 118 30 chr9 97309646 97310012 -44961432 + MLT1L LTR MaLR 166 563 -52 2117 106 0 0 chr9 97310154 97310460 -44960984 + AluSg SINE Alu 1 306 0 395 308 198 21 chr9 97310853 97311191 -44960253 + L2 LINE L2 1764 2161 -1153 785 199 0 0 chr9 97311205 97311351 -44960093 - FRAM SINE Alu -20 156 11 636 176 17 17 chr9 97311374 97311493 -44959951 + MER3 DNA MER1_type 2 120 -89 315 284 121 17 chr9 97312829 97312945 -44958499 - L2 LINE L2 -4 3268 3141 2055 138 0 3 chr9 97313196 97313507 -44957937 + AluSg SINE Alu 1 310 0 1414 215 0 13 chr9 97313634 97313945 -44957499 + AluJo SINE Alu 1 307 -5 225 154 0 0 chr9 97314317 97314356 -44957088 + (CA)n Simple_repeat Simple_repeat 2 40 0 3691 199 48 33 chr9 97314872 97315074 -44956370 - L1MB4 LINE L1 0 6180 5983 2302 94 0 0 chr9 97315074 97315382 -44956062 - AluSx SINE Alu -4 308 1 3691 199 48 33 chr9 97315382 97316360 -44955084 - L1MB4 LINE L1 -197 5983 4980 4724 196 56 16 chr9 97316481 97316941 -44954503 + L1MB8 LINE L1 4082 4522 -1656 1467 194 39 3 chr9 97316941 97317225 -44954219 + AluJo SINE Alu 1 294 -18 4724 196 56 16 chr9 97317225 97318776 -44952668 + L1MB8 LINE L1 4522 6176 -2 325 256 35 118 chr9 97319193 97319506 -44951938 - HAL1 LINE L1 -1 2506 2220 345 276 333 7 chr9 97319725 97320157 -44951287 - HAL1 LINE L1 -343 2164 1592 21 36 0 0 chr9 97320386 97320414 -44951030 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 97320433 97320454 -44950990 + AT_rich Low_complexity Low_complexity 1 21 0 193 170 85 0 chr9 97320717 97320764 -44950680 + L2 LINE L2 3263 3313 0 244 250 0 0 chr9 97321890 97321942 -44949502 + LTR30 LTR ERV1 1 52 -670 1769 162 72 98 chr9 97321942 97322435 -44949009 + LTR12 LTR ERV1 54 487 -227 686 168 0 0 chr9 97322712 97322825 -44948619 + FLAM_A SINE Alu 18 130 -12 231 248 62 138 chr9 97322830 97323201 -44948243 + L1MC4a LINE L1 5625 5967 -1841 2491 74 0 0 chr9 97323668 97323966 -44947478 + AluY SINE Alu 1 298 -13 4125 166 42 27 chr9 97327864 97327999 -44943445 - MER21B LTR ERV1 -27 904 772 1891 139 39 4 chr9 97327999 97328279 -44943165 + AluSx SINE Alu 12 301 -11 4125 166 42 27 chr9 97328279 97328958 -44942486 - MER21B LTR ERV1 -159 772 1 571 251 81 31 chr9 97329330 97329661 -44941783 + LTR16A LTR ERVL 38 428 -22 290 258 0 0 chr9 97329950 97330012 -44941432 - HAL1 LINE L1 0 2507 2446 525 321 123 7 chr9 97330014 97330316 -44941128 + MLT1J LTR MaLR 1 337 -174 192 40 0 0 chr9 97330454 97330479 -44940965 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1033 257 59 65 chr9 97330513 97330771 -44940673 - HAL1 LINE L1 -160 2347 2089 2461 68 0 0 chr9 97330771 97331065 -44940379 + AluY SINE Alu 1 294 -17 1033 257 59 65 chr9 97331065 97331263 -44940181 - HAL1 LINE L1 -418 2089 1892 2487 88 3 0 chr9 97331263 97331568 -44939876 - AluSp SINE Alu -7 306 1 1033 257 59 65 chr9 97331568 97331619 -44939825 - HAL1 LINE L1 -615 1892 1842 369 0 0 0 chr9 97332649 97332690 -44938754 + (CA)n Simple_repeat Simple_repeat 2 42 0 304 272 110 38 chr9 97333482 97333629 -44937815 - MIR SINE MIR -62 146 10 377 278 17 9 chr9 97335166 97335281 -44936163 + CT-rich Low_complexity Low_complexity 5 120 0 190 95 48 24 chr9 97335506 97335548 -44935896 + CT-rich Low_complexity Low_complexity 2 44 0 432 274 36 100 chr9 97335885 97336160 -44935284 - L2 LINE L2 -4 3309 3075 1657 134 39 28 chr9 97336160 97336343 -44935101 - AluJo SINE Alu -3 309 120 245 89 22 0 chr9 97336343 97336388 -44935056 + (TA)n Simple_repeat Simple_repeat 2 47 0 1657 134 39 28 chr9 97336388 97336488 -44934956 - AluJo SINE Alu -192 120 23 432 274 36 100 chr9 97336488 97336680 -44934764 - L2 LINE L2 -238 3075 2872 696 264 7 0 chr9 97336682 97336837 -44934607 - MER45A DNA AcHobo -8 170 15 443 294 55 18 chr9 97336853 97337071 -44934373 - L2 LINE L2 -464 2850 2625 1849 129 33 26 chr9 97337124 97337426 -44934018 + AluSx SINE Alu 2 305 -7 780 266 48 65 chr9 97338053 97338466 -44932978 + L1ME1 LINE L1 5757 6162 -4 2543 70 0 0 chr9 97338494 97338794 -44932650 + AluY SINE Alu 1 300 -11 235 194 104 30 chr9 97338917 97338984 -44932460 - MIR SINE MIR -150 112 41 1576 222 142 34 chr9 97339034 97339557 -44931887 + MLT1G LTR MaLR 9 587 -3 329 240 56 84 chr9 97341325 97341575 -44929869 - LTR16A1 LTR ERVL -6 451 209 241 273 26 13 chr9 97342027 97342104 -44929340 - L2 LINE L2 -13 3300 3223 2284 82 4 0 chr9 97342704 97343004 -44928440 + AluSc SINE Alu 1 301 0 21 0 0 0 chr9 97343004 97343025 -44928419 + AT_rich Low_complexity Low_complexity 1 21 0 1670 178 110 19 chr9 97343735 97344163 -44927281 + MLT1C LTR MaLR 1 467 0 288 193 11 80 chr9 97344232 97344320 -44927124 - MLT1K LTR MaLR -2 586 505 668 305 115 3 chr9 97344415 97344710 -44926734 - MLT1K LTR MaLR -225 363 36 349 287 110 73 chr9 97345130 97345458 -44925986 + L2 LINE L2 2511 2850 -464 1640 233 60 23 chr9 97345474 97346127 -44925317 + MER97b DNA MER1_type? 15 854 -40 978 178 33 33 chr9 97346198 97346412 -44925032 + MER20 DNA MER1_type 1 214 -5 746 274 61 41 chr9 97346424 97346786 -44924658 + L2 LINE L2 2944 3312 -1 1688 194 0 25 chr9 97347108 97347428 -44924016 - AluJo SINE Alu 0 312 1 987 167 6 0 chr9 97348255 97348411 -44923033 + FRAM SINE Alu 6 162 -14 2517 84 0 0 chr9 97348414 97348723 -44922721 + AluSc SINE Alu 1 309 0 228 35 0 0 chr9 97348726 97348755 -44922689 + (CAA)n Simple_repeat Simple_repeat 2 30 0 474 226 98 109 chr9 97350011 97350492 -44920952 - LTR33A LTR ERVL 0 523 2 1113 76 0 0 chr9 97350796 97350940 -44920504 + L1PA7 LINE L1 6004 6147 -7 24 32 0 0 chr9 97351011 97351042 -44920402 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 97351088 97351109 -44920335 + AT_rich Low_complexity Low_complexity 1 21 0 2393 137 18 3 chr9 97354741 97355121 -44916323 - MLT1B LTR MaLR -2 388 3 2089 143 0 0 chr9 97355149 97355442 -44916002 + AluSx SINE Alu 1 293 -19 2221 99 3 0 chr9 97355447 97355775 -44915669 + AluSq SINE Alu 1 329 0 796 247 138 25 chr9 97355896 97356288 -44915156 + L2 LINE L2 2290 2725 -589 774 301 80 21 chr9 97356985 97357373 -44914071 + LTR16C LTR ERVL 1 411 -80 418 312 51 0 chr9 97357429 97357586 -44913858 + MER63A DNA MER1_type 42 206 -4 902 150 170 35 chr9 97358415 97358615 -44912829 - AluJo SINE Alu -2 310 84 198 286 143 8 chr9 97359189 97359322 -44912122 + L2 LINE L2 3158 3308 -5 285 344 31 6 chr9 97360140 97360300 -44911144 - MER117 DNA MER1_type -3 194 31 754 146 0 62 chr9 97360377 97360454 -44910990 + MER5A DNA MER1_type 2 82 -107 2479 78 3 0 chr9 97360454 97360760 -44910684 + AluSc SINE Alu 1 307 -2 754 146 0 62 chr9 97360760 97360817 -44910627 + MER5A DNA MER1_type 82 129 -60 351 0 0 0 chr9 97360817 97360856 -44910588 + (TC)n Simple_repeat Simple_repeat 2 40 0 4955 171 12 30 chr9 97360873 97361725 -44909719 - L1MB4 LINE L1 -3 6177 5311 2130 136 3 0 chr9 97361725 97362026 -44909418 - AluSx SINE Alu -10 302 1 4955 171 12 30 chr9 97362026 97362181 -44909263 - L1MB4 LINE L1 -869 5311 5155 2377 87 0 3 chr9 97362181 97362481 -44908963 - AluSx SINE Alu -13 299 1 4955 171 12 30 chr9 97362481 97362808 -44908636 - L1MB4 LINE L1 -1025 5155 4861 213 128 26 0 chr9 97362809 97362848 -44908596 + MER5A DNA MER1_type 127 166 -23 304 288 0 12 chr9 97364342 97364422 -44907022 - MIR SINE MIR -120 142 64 410 188 12 0 chr9 97364559 97364639 -44906805 + MER5A DNA MER1_type 26 106 -83 2434 69 0 7 chr9 97364902 97365205 -44906239 - AluSc SINE Alu -8 301 1 1474 58 0 5 chr9 97365234 97365422 -44906022 + MER41B LTR ERV1 1 187 -448 * 4193 139 66 70 chr9 97365418 97366293 -44905151 + MER52C LTR ERV1 407 1278 0 2324 83 0 16 chr9 97366293 97366604 -44904840 + MER41A LTR ERV1 249 554 0 7310 163 102 29 chr9 97367002 97367788 -44903656 + L1MCa LINE L1 800 1527 -5080 2513 59 0 10 chr9 97367788 97368091 -44903353 + AluY SINE Alu 1 300 -11 7310 163 102 29 chr9 97368091 97369059 -44902385 + L1MCa LINE L1 1527 2734 -3873 978 159 11 37 chr9 97369065 97369239 -44902205 + L1MC1 LINE L1 6145 6315 -18 2481 67 0 3 chr9 97369239 97369536 -44901908 - AluY SINE Alu -15 296 1 978 159 11 37 chr9 97369536 97369550 -44901894 + L1MC1 LINE L1 6315 6328 -5 1439 237 74 22 chr9 97369597 97369964 -44901480 + L1ME3 LINE L1 5754 6139 -23 667 255 54 91 chr9 97372005 97372542 -44898902 - L1MC4 LINE L1 -1 8041 7525 184 292 28 14 chr9 97373451 97373523 -44897921 - L2 LINE L2 -317 2996 2924 222 250 0 0 chr9 97373805 97373853 -44897591 + L2 LINE L2 3223 3270 -2 2062 90 11 0 chr9 97377038 97377304 -44894140 - AluSq SINE Alu -13 300 32 503 309 64 46 chr9 97377501 97377889 -44893555 - L1ME LINE L1 -514 5648 5254 426 0 0 0 chr9 97377892 97377939 -44893505 + U2 snRNA snRNA 11 57 -131 280 260 100 13 chr9 97377990 97378140 -44893304 - L1ME LINE L1 -989 5157 4995 267 288 0 0 chr9 97378140 97378213 -44893231 + (TA)n Simple_repeat Simple_repeat 2 74 0 575 280 90 63 chr9 97378213 97378910 -44892534 - L1ME LINE L1 -1166 4980 4265 388 251 21 64 chr9 97378929 97379116 -44892328 - L1ME LINE L1 -3737 2409 2231 1262 100 25 10 chr9 97379327 97379527 -44891917 - L1MB3 LINE L1 -280 5903 5701 8504 215 42 23 chr9 97379541 97381777 -44889667 - L1 LINE L1 -1341 4805 2527 2288 85 7 0 chr9 97381938 97382220 -44889224 + AluSc SINE Alu 1 284 -25 1570 153 3 118 chr9 97382372 97382763 -44888681 + L1MB8 LINE L1 5578 5923 -261 411 187 67 0 chr9 97382763 97382838 -44888606 + Tigger3b DNA MER2_type 1 80 -1151 1613 128 0 0 chr9 97382838 97383057 -44888387 + AluSx SINE Alu 1 219 -93 712 142 0 0 chr9 97383057 97383163 -44888281 + AluSg/x SINE Alu 188 293 -19 6979 143 28 1 chr9 97383163 97384295 -44887149 + Tigger3b DNA MER2_type 69 1231 0 256 146 194 97 chr9 97384295 97384398 -44887046 + L1MB8 LINE L1 5923 6035 -143 961 152 140 0 chr9 97384426 97384597 -44886847 - AluJo SINE Alu -30 282 88 283 98 0 39 chr9 97384604 97384655 -44886789 + L1MB8 LINE L1 6028 6076 -102 266 232 0 0 chr9 97385120 97385176 -44886268 - L2 LINE L2 -13 3300 3245 421 150 33 117 chr9 97385224 97385344 -44886100 - L1MA9 LINE L1 -35 6277 6168 272 396 13 7 chr9 97385744 97385893 -44885551 - MIR3 SINE MIR -29 179 30 2436 79 0 10 chr9 97386041 97386345 -44885099 + AluSc SINE Alu 1 301 -8 444 250 18 30 chr9 97387543 97387707 -44883737 + MER5B DNA MER1_type 1 162 -16 31 26 0 0 chr9 97387719 97387757 -44883687 + GC_rich Low_complexity Low_complexity 1 38 0 990 203 100 52 chr9 97387875 97388281 -44883163 + MLT1C LTR MaLR 1 372 -24 1427 206 35 46 chr9 97389016 97389385 -44882059 + MLT1A1 LTR MaLR 1 365 0 473 284 88 23 chr9 97389582 97389976 -44881468 + L2 LINE L2 2728 3147 -166 258 313 100 25 chr9 97390559 97390719 -44880725 - MIR3 SINE MIR -4 204 33 607 140 41 30 chr9 97391307 97391765 -44879679 + (CACAA)n Simple_repeat Simple_repeat 1 463 0 289 264 182 0 chr9 97392735 97392845 -44878599 - L1ME3A LINE L1 -76 6094 5965 853 208 178 59 chr9 97392920 97393291 -44878153 - L1ME3A LINE L1 -208 5962 5548 1424 118 25 5 chr9 97393521 97393724 -44877720 - AluJo SINE Alu -20 292 86 373 296 21 35 chr9 97393783 97393925 -44877519 - L2 LINE L2 -31 3241 3102 625 328 38 3 chr9 97394287 97394580 -44876864 - L2 LINE L2 -615 2699 2397 1690 164 13 45 chr9 97395087 97395399 -44876045 - AluJb SINE Alu -5 307 6 258 298 0 0 chr9 97395776 97395833 -44875611 - LTR67 LTR ERVL -93 464 408 342 115 0 0 chr9 97398198 97398250 -44873194 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 2018 118 14 3 chr9 97398250 97398546 -44872898 - AluSc SINE Alu -10 299 1 340 261 148 31 chr9 97399987 97400064 -44871380 - MIR SINE MIR 0 262 195 1620 157 45 7 chr9 97400064 97400350 -44871094 - AluJo SINE Alu -15 297 1 340 261 148 31 chr9 97400350 97400498 -44870946 - MIR SINE MIR -67 195 17 2410 108 0 0 chr9 97400714 97401021 -44870423 - AluSx SINE Alu -5 307 1 229 100 0 0 chr9 97401095 97401125 -44870319 - U6 snRNA snRNA -77 30 1 401 119 51 40 chr9 97401995 97402172 -44869272 + (TG)n Simple_repeat Simple_repeat 1 179 0 231 64 43 21 chr9 97402212 97402259 -44869185 + (TG)n Simple_repeat Simple_repeat 1 48 0 286 108 50 42 chr9 97402328 97402448 -44868996 + (TG)n Simple_repeat Simple_repeat 1 121 0 254 97 69 28 chr9 97402471 97402570 -44868874 + (TG)n Simple_repeat Simple_repeat 1 103 0 240 78 67 33 chr9 97402608 97402698 -44868746 + (TG)n Simple_repeat Simple_repeat 2 94 0 187 40 80 20 chr9 97402738 97402788 -44868656 + (TG)n Simple_repeat Simple_repeat 1 53 0 271 211 0 0 chr9 97403082 97403134 -44868310 + LTR30 LTR ERV1 1 52 -670 1756 139 60 110 chr9 97403134 97403497 -44867947 + LTR12 LTR ERV1 53 433 -281 2057 113 0 0 chr9 97403497 97403779 -44867665 + AluSc SINE Alu 1 282 -27 300 53 0 0 chr9 97403779 97403817 -44867627 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1756 139 60 110 chr9 97403817 97403905 -44867539 + LTR12 LTR ERV1 431 482 -232 379 206 196 33 chr9 97405643 97405827 -44865617 + MIR SINE MIR 37 250 -12 2205 108 3 16 chr9 97407454 97407760 -44863684 - AluSg SINE Alu -8 302 1 1053 98 0 0 chr9 97407760 97407893 -44863551 - AluSg SINE Alu -177 133 1 421 285 0 24 chr9 97408129 97408252 -44863192 + L2 LINE L2 3153 3272 0 2282 66 30 23 chr9 97409057 97409361 -44862083 + AluY SINE Alu 1 306 -5 190 233 0 0 chr9 97410300 97410343 -44861101 - L3 LINE CR1 -9 1568 1526 2091 286 131 18 chr9 97411468 97412317 -44859127 - L1M4 LINE L1 -1438 4708 3956 303 104 0 0 chr9 97412317 97412365 -44859079 + (TTA)n Simple_repeat Simple_repeat 2 49 0 2091 286 131 18 chr9 97412365 97412680 -44858764 - L1M4 LINE L1 -2190 3956 3678 2090 123 7 7 chr9 97412680 97412989 -44858455 - AluSc SINE Alu 0 309 1 2091 286 131 18 chr9 97412989 97413422 -44858022 - L1M4 LINE L1 -2468 3678 2929 1120 324 30 40 chr9 97413875 97414393 -44857051 - L1MEd LINE L1 -5499 620 107 3778 136 16 23 chr9 97414393 97415039 -44856405 - L1PB4 LINE L1 0 6156 5516 1120 324 30 40 chr9 97415039 97415115 -44856329 - L1MEd LINE L1 -6012 107 32 587 142 0 28 chr9 97415323 97415429 -44856015 - L1MB2 LINE L1 -1 6170 6068 2908 3 0 0 chr9 97416198 97416504 -44854940 + AluYa5 SINE Alu 1 306 -5 2105 91 0 18 chr9 97416903 97417178 -44854266 - AluSc SINE Alu -39 270 1 311 243 121 68 chr9 97417259 97417465 -44853979 - MIR SINE MIR 0 262 46 1407 202 123 45 chr9 97417606 97418071 -44853373 + MLT1D LTR MaLR 5 505 0 432 234 210 39 chr9 97419419 97419624 -44851820 + MIR SINE MIR 17 256 -6 1665 134 62 10 chr9 97420706 97420997 -44850447 + AluJo SINE Alu 1 306 -6 249 268 163 47 chr9 97421013 97421203 -44850241 - L2 LINE L2 -17 3296 3085 326 205 163 65 chr9 97421226 97421287 -44850157 - L2 LINE L2 -665 2649 2595 898 201 105 34 chr9 97421287 97421496 -44849948 + MER58A DNA MER1_type 1 224 0 326 205 163 65 chr9 97421496 97421649 -44849795 - L2 LINE L2 -719 2595 2414 6384 17 3 7 chr9 97421676 97422429 -44849015 - L1PA3 LINE L1 -3 6152 5403 330 278 42 110 chr9 97423634 97423825 -44847619 + MER5B DNA MER1_type 1 178 0 1727 231 108 29 chr9 97425005 97425550 -44845894 - MLT1E LTR MaLR -5 588 1 2246 173 72 0 chr9 97426125 97426155 -44845289 + LOR1b LTR ERV1 1 27 -434 186 43 0 0 chr9 97426155 97426178 -44845266 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2246 173 72 0 chr9 97426178 97426576 -44844868 + LOR1b LTR ERV1 27 460 -1 21 0 0 0 chr9 97426613 97426634 -44844810 + AT_rich Low_complexity Low_complexity 1 21 0 2202 111 3 0 chr9 97426747 97427045 -44844399 + AluSc SINE Alu 1 299 -10 202 290 0 14 chr9 97427640 97427709 -44843735 + T-rich Low_complexity Low_complexity 3 70 0 398 333 100 22 chr9 97427836 97428067 -44843377 - L2 LINE L2 -1368 1946 1698 746 238 5 32 chr9 97428883 97429072 -44842372 + MER5A DNA MER1_type 2 185 -4 1749 175 0 6 chr9 97429171 97429485 -44841959 - AluJb SINE Alu 0 312 1 287 399 84 29 chr9 97429759 97429860 -44841584 - L2 LINE L2 0 3272 3178 3106 83 28 0 chr9 97429860 97430292 -44841152 + MLT2A1 LTR ERVL 1 444 0 287 399 84 29 chr9 97430292 97430428 -44841016 - L2 LINE L2 -94 3178 3022 539 186 55 91 chr9 97431778 97431998 -44839446 + MLT1J1 LTR MaLR 1 212 -234 503 193 55 92 chr9 97432331 97432549 -44838895 + MLT1J1 LTR MaLR 3 212 -234 29 0 0 0 chr9 97432604 97432633 -44838811 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr9 97433185 97433210 -44838234 + (TG)n Simple_repeat Simple_repeat 2 26 0 770 243 20 1 chr9 97433211 97433385 -44838059 - L1ME2 LINE L1 0 6170 5993 22 70 0 0 chr9 97433517 97433560 -44837884 + AT_rich Low_complexity Low_complexity 1 43 0 272 306 155 22 chr9 97434014 97434184 -44837260 - MIR SINE MIR -24 238 45 1632 138 35 4 chr9 97434391 97434652 -44836792 - AluJb SINE Alu -18 294 26 1982 91 4 18 chr9 97434668 97434943 -44836501 + AluSp SINE Alu 21 291 -22 423 216 27 0 chr9 97435079 97435190 -44836254 - L1MB5 LINE L1 -1 6173 6060 2019 166 70 27 chr9 97435190 97435790 -44835654 - L1MB5 LINE L1 -441 5743 5117 367 285 94 66 chr9 97435848 97436136 -44835308 - L1MC4a LINE L1 -1904 5904 5609 2041 138 10 0 chr9 97436142 97436440 -44835004 - AluSx SINE Alu -11 301 1 560 212 30 0 chr9 97436441 97436573 -44834871 - L1MB5 LINE L1 -3621 2525 2390 422 230 133 12 chr9 97436561 97436869 -44834575 - L1MEc LINE L1 -3896 2644 2306 * 791 302 50 19 chr9 97436975 97437438 -44834006 - L1MEc LINE L1 -2304 3911 3435 938 258 172 36 chr9 97437466 97437677 -44833767 - L1MEc LINE L1 -2866 3349 3168 2248 147 17 0 chr9 97437677 97438037 -44833407 - MER47A DNA MER2_type 0 366 1 938 258 172 36 chr9 97438037 97438302 -44833142 - L1MEc LINE L1 -3047 3168 2941 2427 93 0 3 chr9 97438302 97438613 -44832831 - AluSq SINE Alu -3 310 1 938 258 172 36 chr9 97438613 97438838 -44832606 - L1MEc LINE L1 -3274 2941 2551 803 287 114 33 chr9 97438897 97439446 -44831998 - L1MEc LINE L1 -3745 2470 1967 2296 58 4 0 chr9 97439446 97439723 -44831721 - AluY SINE Alu -13 298 21 803 287 114 33 chr9 97439723 97440083 -44831361 - L1MEc LINE L1 -4248 1967 1638 267 79 0 0 chr9 97440083 97440121 -44831323 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1871 160 0 13 chr9 97440126 97440439 -44831005 - AluJb SINE Alu -1 311 3 803 287 114 33 chr9 97440439 97440703 -44830741 - L1MEc LINE L1 -4580 1635 1237 230 328 120 8 chr9 97440851 97440976 -44830468 - MIR SINE MIR -77 185 47 1691 174 0 10 chr9 97442265 97442563 -44828881 + AluJb SINE Alu 17 311 -1 188 132 0 26 chr9 97442631 97442669 -44828775 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 300 53 0 0 chr9 97442686 97442724 -44828720 + (TG)n Simple_repeat Simple_repeat 1 38 0 1522 168 119 7 chr9 97442759 97443062 -44828382 + MER2 DNA MER2_type 1 337 -8 347 281 51 72 chr9 97443096 97443185 -44828259 - L1MEc LINE L1 -3063 3083 2994 1743 145 24 27 chr9 97443185 97443481 -44827963 + AluJo SINE Alu 1 295 -17 347 281 51 72 chr9 97443481 97443626 -44827818 - L1MEc LINE L1 -3152 2994 2854 1155 141 0 0 chr9 97444009 97444172 -44827272 + AluJb SINE Alu 137 299 -13 368 284 103 41 chr9 97444191 97444385 -44827059 - HAL1 LINE L1 -871 1636 1431 25 0 0 0 chr9 97445377 97445402 -44826042 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr9 97445513 97445548 -44825896 + AT_rich Low_complexity Low_complexity 1 35 0 431 323 146 12 chr9 97445592 97445914 -44825530 - L1MC/D LINE L1 -2089 5719 5355 276 318 93 14 chr9 97446187 97446476 -44824968 - L1MC/D LINE L1 -1130 5016 4705 180 311 135 0 chr9 97447429 97447503 -44823941 - L2 LINE L2 0 3313 3230 574 236 182 18 chr9 97447546 97447771 -44823673 + MIR SINE MIR 1 262 0 640 124 0 0 chr9 97448086 97448175 -44823269 + 5S rRNA rRNA 1 89 -32 994 293 80 63 chr9 97449169 97449760 -44821684 - L2 LINE L2 -1412 1902 1302 905 144 0 0 chr9 97450454 97450586 -44820858 - AluSq/x SINE Alu -181 132 1 318 80 0 0 chr9 97450908 97450958 -44820486 + (CA)n Simple_repeat Simple_repeat 2 51 0 478 337 27 57 chr9 97450958 97451217 -44820227 - L2 LINE L2 -437 2877 2627 1726 147 16 95 chr9 97451217 97451640 -44819804 + MLT1B LTR MaLR 1 390 0 478 337 27 57 chr9 97451640 97451677 -44819767 - L2 LINE L2 -687 2627 2590 184 325 0 0 chr9 97452060 97452100 -44819344 + MIR SINE MIR 72 111 -97 234 327 19 25 chr9 97452172 97452219 -44819225 - L1MA10 LINE L1 -5 6329 6283 2292 226 70 32 chr9 97452219 97452250 -44819194 - L1ME2 LINE L1 -44 6120 6092 1065 157 86 0 chr9 97452250 97452447 -44818997 - MER58C DNA MER1_type 0 215 2 2292 226 70 32 chr9 97452447 97453100 -44818344 - L1ME2 LINE L1 -72 6092 5410 1234 249 35 5 chr9 97453096 97453465 -44817979 - L1MEc LINE L1 -3437 2709 2330 * 673 176 56 0 chr9 97453462 97453604 -44817840 - L1ME1 LINE L1 -319 5847 5698 * 388 267 68 0 chr9 97453615 97453803 -44817641 - L1MEc LINE L1 -3826 2320 2111 369 174 0 105 chr9 97453803 97453889 -44817555 - LTR40c LTR ERVL 0 465 389 364 281 0 89 chr9 97453890 97453993 -44817451 - MIR SINE MIR -136 126 36 1624 177 67 0 chr9 97453993 97454276 -44817168 - AluJo SINE Alu -10 302 1 364 281 0 89 chr9 97454276 97454307 -44817137 - MIR SINE MIR -226 36 4 263 327 142 0 chr9 97454389 97454502 -44816942 + L2 LINE L2 3138 3266 -6 22 35 0 0 chr9 97454517 97454546 -44816898 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr9 97454675 97454701 -44816743 + AT_rich Low_complexity Low_complexity 1 26 0 549 236 129 33 chr9 97454850 97455091 -44816353 - HAL1 LINE L1 -5 2502 2239 584 228 104 28 chr9 97455169 97455380 -44816064 - HAL1 LINE L1 -2190 317 91 258 283 10 20 chr9 97455459 97455558 -44815886 + (TATG)n Simple_repeat Simple_repeat 1 98 0 1313 256 72 88 chr9 97455568 97456474 -44814970 - L1MC4 LINE L1 -150 7892 7001 240 111 0 0 chr9 97456518 97456554 -44814890 + (CTTG)n Simple_repeat Simple_repeat 2 37 0 186 43 0 0 chr9 97456558 97456581 -44814863 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 3625 177 64 38 chr9 97456637 97457443 -44814001 - L1ME1 LINE L1 -51 6115 5253 2228 107 0 0 chr9 97457443 97457733 -44813711 - AluSc SINE Alu -19 290 1 3625 177 64 38 chr9 97457733 97458059 -44813385 - L1ME1 LINE L1 -913 5253 4937 449 279 229 29 chr9 97458043 97458398 -44813046 - L1MC4 LINE L1 -935 6873 6562 * 2279 93 0 7 chr9 97459766 97460066 -44811378 - AluSx SINE Alu -14 298 1 345 286 16 77 chr9 97460759 97460941 -44810503 + MIR SINE MIR 10 180 -82 24 32 0 0 chr9 97461099 97461130 -44810314 + AT_rich Low_complexity Low_complexity 1 31 0 2197 77 21 3 chr9 97461956 97462242 -44809202 - AluSg SINE Alu -19 291 1 7910 111 46 22 chr9 97462445 97463674 -44807770 + Tigger2 DNA MER2_type 1461 2718 0 2228 83 0 3 chr9 97463868 97464156 -44807288 - AluSc SINE Alu -22 287 1 23 54 0 0 chr9 97465543 97465580 -44805864 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr9 97465847 97465876 -44805568 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr9 97467545 97467577 -44803867 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr9 97467750 97467783 -44803661 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr9 97467845 97467873 -44803571 + AT_rich Low_complexity Low_complexity 1 28 0 5369 148 17 41 chr9 97468876 97469930 -44801514 + L1MC2 LINE L1 5191 6226 -118 306 225 192 17 chr9 97469957 97470077 -44801367 + L1MC2 LINE L1 6204 6344 0 249 219 23 62 chr9 97472975 97473103 -44798341 - L1MEd LINE L1 -5059 1060 938 297 285 21 31 chr9 97473157 97473350 -44798094 - L1MEd LINE L1 -5338 781 591 260 175 0 0 chr9 97473793 97473850 -44797594 - HAL1 LINE L1 -741 1766 1710 1597 288 109 38 chr9 97474403 97475156 -44796288 - HAL1 LINE L1 -607 1900 1085 1940 118 21 4 chr9 97475156 97475435 -44796009 - AluSg SINE Alu -16 294 11 1597 288 109 38 chr9 97475435 97475481 -44795963 - HAL1 LINE L1 -1422 1085 1044 329 283 0 0 chr9 97475625 97475724 -44795720 - L1M4 LINE L1 -1561 4585 4487 421 304 92 57 chr9 97476501 97476644 -44794800 + MIR SINE MIR 22 177 -85 2074 138 3 7 chr9 97476644 97476949 -44794495 + AluSx SINE Alu 1 304 -8 421 304 92 57 chr9 97476949 97477032 -44794412 + MIR SINE MIR 177 256 -6 183 292 46 0 chr9 97477969 97478034 -44793410 - L3b LINE CR1 -94 1489 1422 200 320 40 100 chr9 97479062 97479362 -44792082 - L2 LINE L2 -638 2676 2395 4818 154 20 8 chr9 97479628 97480487 -44790957 - L1MD1 LINE L1 0 6636 5768 3473 214 70 47 chr9 97480485 97482583 -44788861 - L1MD1 LINE L1 -2556 3984 1805 * 1690 238 201 38 chr9 97482583 97483525 -44787919 - L1MD1 LINE L1 -5084 1456 197 878 221 19 99 chr9 97483564 97483939 -44787505 - L1M4 LINE L1 -3250 2896 2552 620 211 90 6 chr9 97484013 97484169 -44787275 - L1MD1 LINE L1 -6333 207 39 516 299 131 59 chr9 97485365 97485977 -44785467 + HAL1 LINE L1 811 1466 -1041 305 304 17 26 chr9 97486497 97486612 -44784832 - MER5A DNA MER1_type -30 159 46 4894 155 31 31 chr9 97486618 97487625 -44783819 + L1MB3 LINE L1 5173 6178 -5 7381 97 6 22 chr9 97487721 97488809 -44782635 - MER11C LTR ERVK 0 1071 1 408 307 45 38 chr9 97488996 97489260 -44782184 + L1M4 LINE L1 2184 2449 -3697 253 234 16 0 chr9 97489262 97489326 -44782118 + L1M4 LINE L1 2510 2574 -3572 2345 85 0 0 chr9 97489328 97489621 -44781823 + AluY SINE Alu 1 293 -18 11090 125 34 5 chr9 97489710 97491451 -44779993 + Tigger1 DNA MER2_type 1 1792 -626 1622 129 30 0 chr9 97491452 97491684 -44779760 + AluSx SINE Alu 1 239 -73 3509 210 61 65 chr9 97491775 97492811 -44778633 + L1M4c LINE L1 823 1727 -4657 2262 93 0 26 chr9 97492811 97493113 -44778331 + AluSg1 SINE Alu 3 296 -13 3509 210 61 65 chr9 97493113 97493311 -44778133 + L1M4c LINE L1 1727 1924 -4460 5878 234 37 11 chr9 97493358 97494969 -44776475 + L1M4c LINE L1 2151 3831 -2551 2273 103 3 0 chr9 97494969 97495270 -44776174 + AluSg SINE Alu 1 302 -8 5878 234 37 11 chr9 97495270 97495671 -44775773 + L1M4c LINE L1 3831 4220 -2162 1295 173 12 29 chr9 97495696 97495939 -44775505 + AluSx SINE Alu 64 302 -10 335 211 28 28 chr9 97495940 97496049 -44775395 + L1M4c LINE L1 4221 4329 -2053 1382 161 55 4 chr9 97496056 97496329 -44775115 + L1MB3 LINE L1 5889 6175 -8 2359 81 3 0 chr9 97496376 97496671 -44774773 + AluY SINE Alu 1 296 -15 1015 257 25 12 chr9 97497043 97497288 -44774156 - MIR SINE MIR 0 262 15 665 172 40 0 chr9 97498402 97498553 -44772891 - L1MA10 LINE L1 -3 6331 6175 426 171 9 72 chr9 97498553 97498694 -44772750 - L1MB8 LINE L1 -151 6021 5896 33 43 0 0 chr9 97498861 97498908 -44772536 + AT_rich Low_complexity Low_complexity 1 47 0 442 299 175 0 chr9 97499295 97499449 -44771995 - MER5A DNA MER1_type 0 189 9 2345 132 22 8 chr9 97499569 97499939 -44771505 - THE1C LTR MaLR 0 375 1 6294 35 31 0 chr9 97500959 97501732 -44769712 - L1PA3 LINE L1 0 6155 5359 * 9158 32 6 2 chr9 97501724 97502851 -44768593 + L1PA3 LINE L1 4256 5387 -759 1359 219 133 45 chr9 97503410 97503808 -44767636 + MLT1D LTR MaLR 1 433 -72 732 158 8 39 chr9 97503808 97503935 -44767509 - AluJb SINE Alu -106 206 84 736 235 132 0 chr9 97503962 97504175 -44767269 + L1MC4a LINE L1 3504 3744 -2402 2016 202 37 7 chr9 97504203 97504638 -44766806 + MLT1C LTR MaLR 20 467 0 234 250 56 0 chr9 97504729 97504801 -44766643 + L1MC4a LINE L1 5209 5284 -862 2209 110 51 23 chr9 97504801 97505155 -44766289 - THE1B LTR MaLR 0 364 1 360 251 92 60 chr9 97505451 97505702 -44765742 + L1MC4a LINE L1 5650 5908 -1900 346 231 0 26 chr9 97505740 97505818 -44765626 + Tigger5 DNA MER2_type 1 76 -2247 333 179 0 0 chr9 97505828 97505884 -44765560 - Tigger5 DNA MER2_type -3 2320 2265 * 403 229 0 12 chr9 97505881 97505964 -44765480 + Tigger5 DNA MER2_type 2242 2323 0 297 0 0 0 chr9 97506229 97506262 -44765182 + (TG)n Simple_repeat Simple_repeat 2 34 0 395 222 152 61 chr9 97506281 97506479 -44764965 - L1MC4 LINE L1 -25 8017 7802 2995 226 83 5 chr9 97506624 97507457 -44763987 - L1MC4 LINE L1 -245 7797 6900 368 150 9 26 chr9 97507457 97507565 -44763879 + MLT1D LTR MaLR 1 184 -321 453 309 60 64 chr9 97508268 97508517 -44762927 + MIR SINE MIR 15 262 0 1671 143 30 23 chr9 97508592 97508892 -44762552 - AluSx SINE Alu -10 302 1 317 208 0 14 chr9 97510410 97510480 -44760964 - MIR3 SINE MIR -36 172 103 371 134 0 15 chr9 97511166 97511233 -44760211 + Alu SINE Alu 235 300 -2 1969 262 93 11 chr9 97511821 97512649 -44758795 - L2 LINE L2 -5 3308 2412 427 235 63 29 chr9 97514888 97515235 -44756209 - LTR1B LTR ERV1 -353 486 32 2915 180 80 17 chr9 97515239 97516043 -44755401 + Charlie1 DNA MER1_type 1514 2414 -347 282 284 0 0 chr9 97516184 97516251 -44755193 + L2 LINE L2 3201 3267 -5 701 193 0 82 chr9 97516322 97516493 -44754951 + AluJo SINE Alu 3 159 -153 4355 128 187 91 chr9 97516506 97517952 -44753492 - pTR5 LTR ERV1 0 2438 375 233 163 0 0 chr9 97517952 97517995 -44753449 - L1MCa LINE L1 -4691 1735 1693 401 323 185 41 chr9 97518007 97518092 -44753352 - HAL1 LINE L1 -938 1569 1498 1779 155 0 39 chr9 97518092 97518402 -44753042 - AluJb SINE Alu -14 298 1 401 323 185 41 chr9 97518402 97518657 -44752787 - HAL1 LINE L1 -1009 1498 1180 424 136 0 0 chr9 97518704 97518763 -44752681 + AluJ/FRAM SINE Alu 220 278 -34 317 292 84 45 chr9 97519349 97519551 -44751893 - L1MCa LINE L1 -5899 517 308 192 273 0 0 chr9 97520815 97520859 -44750585 - L2 LINE L2 -209 3063 3020 5335 137 111 49 chr9 97520930 97522021 -44749423 + MER52C LTR ERV1 26 1184 -94 273 199 213 50 chr9 97522201 97522342 -44749102 - MER5C DNA MER1_type 0 324 161 3168 188 70 3 chr9 97522351 97523032 -44748412 - L1MB2 LINE L1 0 6171 5445 2788 10 0 10 chr9 97523039 97523372 -44748072 - AluYa5 SINE Alu 0 311 1 393 80 53 26 chr9 97523450 97523563 -44747881 + (CACAC)n Simple_repeat Simple_repeat 1 116 0 24 67 0 0 chr9 97523954 97523999 -44747445 + GC_rich Low_complexity Low_complexity 1 45 0 1015 228 63 104 chr9 97525125 97525369 -44746075 + L1ME3A LINE L1 5725 5943 -227 2575 68 0 3 chr9 97525369 97525680 -44745764 + AluSg SINE Alu 1 310 0 1015 228 63 104 chr9 97525680 97525895 -44745549 + L1ME3A LINE L1 5943 6165 -5 726 195 51 64 chr9 97526128 97526356 -44745088 + MER74A LTR ERVL 12 236 -322 258 231 0 0 chr9 97526356 97526408 -44745036 + LTR30 LTR ERV1 1 52 -670 1405 107 4 83 chr9 97526408 97526661 -44744783 + LTR12 LTR ERV1 53 285 -429 375 176 33 22 chr9 97526661 97526752 -44744692 + LTR30 LTR ERV1 552 643 -79 420 91 121 121 chr9 97526753 97526777 -44744667 + LTR12 LTR ERV1 481 504 -210 2340 59 0 17 chr9 97526777 97527067 -44744377 + AluY SINE Alu 16 300 -11 420 91 121 121 chr9 97527067 97527141 -44744303 + LTR12 LTR ERV1 503 579 -135 464 239 149 42 chr9 97527142 97527431 -44744013 + MER74B LTR ERVL 303 622 0 296 324 75 25 chr9 97527434 97527712 -44743732 - L2 LINE L2 -3 3310 3019 315 128 0 0 chr9 97529106 97529153 -44742291 + Alu SINE Alu 245 291 -9 244 242 110 11 chr9 97529445 97529536 -44741908 + MIR3 SINE MIR 61 160 -48 231 61 0 0 chr9 97530239 97530272 -44741172 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 250 306 32 45 chr9 97530774 97530931 -44740513 + MER5B DNA MER1_type 3 157 -21 2425 143 79 13 chr9 97531130 97531600 -44739844 + L1MB3 LINE L1 5681 6181 -2 1632 148 0 34 chr9 97531803 97532066 -44739378 - AluJb SINE Alu -15 297 44 1701 132 67 57 chr9 97533017 97533242 -44738202 - THE1C LTR MaLR 0 375 143 2270 84 14 0 chr9 97533242 97533529 -44737915 + AluSg SINE Alu 1 291 -19 1701 132 67 57 chr9 97533529 97533674 -44737770 - THE1C LTR MaLR -232 143 1 223 239 34 34 chr9 97535100 97535188 -44736256 + G-rich Low_complexity Low_complexity 1 88 0 292 273 94 8 chr9 97535712 97535840 -44735604 - MIR SINE MIR -16 246 108 329 240 191 44 chr9 97538448 97538631 -44732813 - MLT1K LTR MaLR -5 583 374 545 54 66 30 chr9 97539930 97540097 -44731347 + (CA)n Simple_repeat Simple_repeat 1 173 0 361 90 90 12 chr9 97540108 97540274 -44731170 + (CA)n Simple_repeat Simple_repeat 1 179 0 358 258 84 53 chr9 97540399 97540589 -44730855 - L2 LINE L2 -994 2320 2125 373 312 239 23 chr9 97541109 97542210 -44729234 - L2 LINE L2 -1903 1411 73 373 313 70 8 chr9 97545124 97545252 -44726192 + L2 LINE L2 3137 3272 0 1440 207 23 69 chr9 97545423 97545815 -44725629 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr9 97547643 97547664 -44723780 + AT_rich Low_complexity Low_complexity 1 21 0 260 297 27 45 chr9 97548837 97548948 -44722496 + MER112 DNA MER1_type 49 157 -103 1149 151 12 0 chr9 97549358 97549530 -44721914 - AluSg/x SINE Alu -5 307 134 2155 108 7 7 chr9 97549533 97549830 -44721614 - AluSx SINE Alu -15 297 1 2362 111 33 28 chr9 97551171 97551533 -44719911 - THE1B LTR MaLR 0 364 1 2041 246 52 72 chr9 97551579 97552482 -44718962 - L1MC5 LINE L1 -445 7516 6696 225 0 0 0 chr9 97552482 97552507 -44718937 + (TG)n Simple_repeat Simple_repeat 2 26 0 2041 246 52 72 chr9 97552507 97552716 -44718728 - L1MC5 LINE L1 -1265 6696 6484 462 309 109 19 chr9 97553016 97553547 -44717897 - HAL1b LINE L1 -704 644 66 284 224 71 24 chr9 97556856 97556941 -44714503 + MER20B DNA MER1_type 45 133 -650 222 280 0 13 chr9 97558367 97558442 -44713002 + A-rich Low_complexity Low_complexity 1 74 0 217 300 0 17 chr9 97561374 97561434 -44710010 - L3 LINE CR1 -4 1573 1515 374 169 46 15 chr9 97561718 97561989 -44709455 + (TA)n Simple_repeat Simple_repeat 1 279 0 556 309 72 16 chr9 97563838 97564087 -44707357 - MLT1L LTR MaLR -13 602 340 2051 151 7 0 chr9 97564137 97564436 -44707008 - AluSx SINE Alu -11 301 1 2106 146 33 33 chr9 97564458 97564822 -44706622 - THE1B LTR MaLR 0 364 1 7268 96 25 4 chr9 97564822 97565803 -44705641 - THE1B-int LTR MaLR 0 1580 579 4091 174 71 37 chr9 97566300 97567116 -44704328 - MER21B LTR ERV1 -19 844 1 249 279 0 0 chr9 97568015 97568076 -44703368 + Charlie1 DNA MER1_type 3 63 -2698 866 139 194 10 chr9 97568206 97568407 -44703037 + Charlie1 DNA MER1_type 2524 2761 0 24 0 0 0 chr9 97568618 97568642 -44702802 + AT_rich Low_complexity Low_complexity 1 24 0 8324 133 54 6 chr9 97571575 97572980 -44698464 + Tigger1 DNA MER2_type 2 1474 -944 753 197 0 28 chr9 97572982 97573124 -44698320 + FLAM_A SINE Alu 1 138 -4 2972 128 7 0 chr9 97573125 97573584 -44697860 + Tigger1 DNA MER2_type 1475 1936 -482 567 158 260 0 chr9 97573580 97573707 -44697737 + Tigger1 DNA MER2_type 2259 2418 0 * 1462 196 35 119 chr9 97574336 97574872 -44696572 + MLT1D LTR MaLR 15 505 0 21 0 0 0 chr9 97574958 97574979 -44696465 + AT_rich Low_complexity Low_complexity 1 21 0 2475 61 0 3 chr9 97575109 97575404 -44696040 + AluY SINE Alu 1 294 -17 1123 124 30 0 chr9 97575926 97576095 -44695349 - AluSc SINE Alu -16 293 120 2130 124 3 7 chr9 97576771 97577069 -44694375 - AluSq SINE Alu -16 297 1 186 206 0 0 chr9 97578042 97578076 -44693368 - L2 LINE L2 -219 3053 3020 4977 143 111 48 chr9 97578147 97579237 -44692207 + MER52C LTR ERV1 26 1184 -94 340 199 213 50 chr9 97579417 97579558 -44691886 - MER5C DNA MER1_type 0 324 161 3021 188 70 3 chr9 97579567 97580248 -44691196 - L1MB2 LINE L1 0 6171 5445 2813 7 0 10 chr9 97580255 97580588 -44690856 - AluYa5 SINE Alu 0 311 1 488 261 8 0 chr9 97580591 97580710 -44690734 - MER5C DNA MER1_type -160 164 45 298 344 25 6 chr9 97580800 97580957 -44690487 - MIR SINE MIR -58 204 45 1814 216 175 8 chr9 97582241 97582722 -44688722 + MLT1F1 LTR MaLR 1 561 -6 954 114 8 0 chr9 97583458 97583589 -44687855 + FLAM_C SINE Alu 1 132 -1 581 222 61 33 chr9 97585603 97585783 -44685661 + MIR SINE MIR 5 189 -73 2336 129 0 0 chr9 97586515 97586825 -44684619 - AluSg SINE Alu 0 310 1 891 211 60 22 chr9 97587048 97587280 -44684164 + MER21B-int LTR ERV1 1397 1637 -2554 586 254 12 52 chr9 97587358 97587435 -44684009 + MER21B-int LTR ERV1 1638 1717 -2474 2410 68 0 10 chr9 97587435 97587727 -44683717 + AluSg SINE Alu 3 291 -19 586 254 12 52 chr9 97587727 97587822 -44683622 + MER21B-int LTR ERV1 1717 1803 -2388 6554 175 28 21 chr9 97587894 97589203 -44682241 + MER21B-int LTR ERV1 1674 2992 -1199 2239 155 36 19 chr9 97589201 97589615 -44681829 + MER21B-int LTR ERV1 3701 4121 -70 * 3670 178 131 5 chr9 97589697 97590452 -44680992 + MER21B LTR ERV1 3 852 -11 262 218 0 35 chr9 97591888 97591975 -44679469 + G-rich Low_complexity Low_complexity 4 87 0 441 210 30 0 chr9 97594673 97594773 -44676671 + MLT1A1 LTR MaLR 1 103 -271 1479 158 91 119 chr9 97594797 97595291 -44676153 - LTR12 LTR ERV1 -234 480 1 804 189 24 6 chr9 97595328 97595497 -44675947 + MLT1A1 LTR MaLR 192 363 -2 341 310 33 16 chr9 97595498 97595682 -44675762 + L1MC4a LINE L1 5748 5934 -1874 307 179 13 13 chr9 97596141 97596219 -44675225 + GA-rich Low_complexity Low_complexity 3 80 0 273 303 37 9 chr9 97596780 97596889 -44674555 + MIR SINE MIR 37 148 -60 470 228 98 31 chr9 97597227 97597420 -44674024 - LTR33 LTR ERVL -2 519 314 366 219 71 77 chr9 97597506 97597689 -44673755 - LTR33 LTR ERVL -339 182 1 2152 128 21 51 chr9 97597840 97598215 -44673229 - THE1B LTR MaLR 0 364 1 304 303 78 25 chr9 97598738 97599018 -44672426 + L1ME4a LINE L1 5784 6085 -36 2179 174 28 0 chr9 97599018 97599410 -44672034 - MER57A LTR ERV1 0 403 1 304 303 78 25 chr9 97599410 97599449 -44671995 + L1ME4a LINE L1 6085 6120 -1 2486 189 68 17 chr9 97600932 97600956 -44670488 + L1MB7 LINE L1 4749 4770 -1414 2501 132 59 15 chr9 97600956 97601364 -44670080 + MSTB LTR MaLR 1 426 0 2486 189 68 17 chr9 97601364 97602360 -44669084 + L1MB7 LINE L1 4770 5821 -363 2104 200 21 64 chr9 97602364 97602929 -44668515 - LTR55 LTR ERV -5 543 3 1361 185 70 24 chr9 97602930 97603271 -44668173 + L1MB7 LINE L1 5818 6174 -10 519 163 8 54 chr9 97603545 97603674 -44667770 - L1MC4 LINE L1 -20 8022 7900 2455 88 0 3 chr9 97603716 97604023 -44667421 - AluSg SINE Alu -4 306 1 930 38 27 54 chr9 97604045 97604230 -44667214 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 289 284 0 0 chr9 97604252 97604340 -44667104 - L1M4 LINE L1 -1311 4835 4748 1243 218 67 45 chr9 97604611 97604987 -44666457 + MLT1B LTR MaLR 1 384 -6 379 211 11 33 chr9 97606133 97606223 -44665221 - MER58A DNA MER1_type -1 106 19 691 161 16 8 chr9 97606245 97606369 -44665075 - AluJb SINE Alu 0 312 188 236 267 0 0 chr9 97606371 97606416 -44665028 + MIR SINE MIR 95 139 -69 366 61 0 0 chr9 97606549 97606598 -44664846 + (TG)n Simple_repeat Simple_repeat 1 49 0 294 287 0 0 chr9 97607868 97607955 -44663489 - MLT1G1 LTR MaLR 0 549 463 515 286 41 20 chr9 97607964 97608219 -44663225 - MLT1G1 LTR MaLR -266 283 17 382 256 69 76 chr9 97608403 97608665 -44662779 - MLT1K LTR MaLR -3 585 326 604 239 114 73 chr9 97658731 97658872 -44612572 + HAL1 LINE L1 659 793 -1714 1688 171 0 16 chr9 97658872 97659188 -44612256 - AluJo SINE Alu -1 311 1 604 239 114 73 chr9 97659188 97659415 -44612029 + HAL1 LINE L1 793 1042 -1465 2385 160 18 3 chr9 97659465 97659846 -44611598 + LTR26E LTR ERV1 229 615 -7 1946 91 0 0 chr9 97659980 97660245 -44611199 - AluY SINE Alu -6 305 41 2525 101 43 3 chr9 97660245 97660590 -44610854 - THE1B LTR MaLR -5 359 1 1735 209 89 132 chr9 97660592 97661664 -44609780 + HAL1 LINE L1 1482 2507 0 4361 130 78 21 chr9 97661820 97662625 -44608819 + L1MA8 LINE L1 5431 6281 -10 292 353 30 15 chr9 97662671 97662804 -44608640 - L2 LINE L2 -5 3267 3133 575 262 158 15 chr9 97663645 97663847 -44607597 - MIR SINE MIR -1 261 31 306 252 78 39 chr9 97664149 97664252 -44607192 + MLT1L LTR MaLR 420 526 -89 185 246 82 82 chr9 97664420 97664530 -44606914 + MIR SINE MIR 119 228 -34 260 218 18 0 chr9 97665569 97665624 -44605820 + Charlie8 DNA MER1_type 116 171 -2246 252 198 277 10 chr9 97665895 97665996 -44605448 + MIR SINE MIR 63 190 -72 247 298 48 12 chr9 97666066 97666150 -44605294 + MLT1K LTR MaLR 479 565 -23 1600 163 3 37 chr9 97666200 97666500 -44604944 + AluJo SINE Alu 1 290 -22 250 231 62 0 chr9 97667855 97667920 -44603524 - L2 LINE L2 -94 3219 3151 1869 144 0 3 chr9 97669832 97670163 -44601281 + AluSx SINE Alu 1 330 0 1865 234 96 43 chr9 97670410 97670919 -44600525 - MLT1H1 LTR MaLR 0 555 24 593 272 67 22 chr9 97671169 97671477 -44599967 + L2 LINE L2 2707 3029 -243 237 108 0 0 chr9 97671656 97671693 -44599751 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 657 228 99 56 chr9 97672064 97672297 -44599147 + MIR SINE MIR 20 262 0 1945 176 59 38 chr9 97673478 97673899 -44597545 - MSTB1 LTR MaLR -2 430 1 1264 270 51 18 chr9 97674123 97674515 -44596929 + L1MDa LINE L1 413 817 -5723 1090 319 76 16 chr9 97674773 97675221 -44596223 - L2 LINE L2 -527 2787 2313 221 330 131 17 chr9 97675221 97675397 -44596047 + L2 LINE L2 1395 1590 -1724 671 271 110 42 chr9 97675402 97675427 -44596017 + L2 LINE L2 1991 2013 -1301 2348 90 10 0 chr9 97675427 97675726 -44595718 - AluSg SINE Alu -8 302 1 671 271 110 42 chr9 97675726 97676010 -44595434 + L2 LINE L2 2013 2321 -993 246 363 173 12 chr9 97675997 97676245 -44595199 - L2 LINE L2 -1930 1384 1097 * 1399 211 52 33 chr9 97676256 97676621 -44594823 - MLT1H1 LTR MaLR -14 541 170 260 45 68 0 chr9 97676660 97676704 -44594740 + T-rich Low_complexity Low_complexity 2 48 0 939 130 0 0 chr9 97676707 97676830 -44594614 - FLAM_C SINE Alu -20 123 1 425 222 144 1 chr9 97676835 97676979 -44594465 - MLT1G1 LTR MaLR -388 161 1 811 321 185 11 chr9 97676981 97677738 -44593706 - L2 LINE L2 -2208 1106 218 1818 167 3 10 chr9 97677739 97678038 -44593406 + AluJb SINE Alu 1 297 -15 614 199 15 157 chr9 97678735 97678997 -44592447 - L2 LINE L2 0 3313 3089 2390 101 0 0 chr9 97680383 97680680 -44590764 + AluSx SINE Alu 1 297 -15 811 319 92 55 chr9 97682398 97682873 -44588571 - L2 LINE L2 -211 3061 2605 2179 119 7 0 chr9 97682873 97683167 -44588277 + AluSq SINE Alu 1 296 -17 811 319 92 55 chr9 97683167 97683289 -44588155 - L2 LINE L2 -667 2605 2489 2327 133 68 36 chr9 97683289 97683703 -44587741 + MSTC LTR MaLR 1 427 -1 811 319 92 55 chr9 97683703 97683931 -44587513 - L2 LINE L2 -783 2489 2203 974 288 37 18 chr9 97685103 97685430 -44586014 + MLT1I LTR MaLR 77 409 0 1796 181 10 0 chr9 97685803 97686112 -44585332 - AluJo SINE Alu 0 312 1 186 247 0 0 chr9 97686860 97686937 -44584507 + (CA)n Simple_repeat Simple_repeat 1 77 0 267 232 146 0 chr9 97687738 97687820 -44583624 + MIR SINE MIR 77 170 -92 1645 150 39 18 chr9 97688072 97688352 -44583092 + AluJb SINE Alu 1 286 -26 1506 277 86 9 chr9 97689118 97689674 -44581770 - L1M4 LINE L1 -1996 4150 3552 1096 213 56 30 chr9 97689690 97690175 -44581269 + MLT1F1 LTR MaLR 1 557 -10 895 307 9 12 chr9 97690204 97690549 -44580895 - HAL1 LINE L1 -754 1753 1410 841 208 15 25 chr9 97690612 97690809 -44580635 + MER3 DNA MER1_type 15 209 0 1171 299 121 34 chr9 97690828 97691993 -44579451 - HAL1 LINE L1 -1194 1313 48 2286 89 4 0 chr9 97692804 97693085 -44578359 + AluSx SINE Alu 9 290 -22 215 297 33 55 chr9 97693463 97693554 -44577890 + MIR SINE MIR 110 198 -64 1858 179 0 7 chr9 97693813 97694120 -44577324 - AluJb SINE Alu -7 305 1 209 279 48 58 chr9 97694168 97694272 -44577172 - MIR SINE MIR -32 230 128 1992 162 3 29 chr9 97694410 97694756 -44576688 + MER1B DNA MER1_type 1 337 0 315 301 81 23 chr9 97695773 97695946 -44575498 + L1MEd LINE L1 572 754 -5365 465 249 70 74 chr9 97696671 97696900 -44574544 + LTR16C LTR ERVL 90 317 -174 1045 228 201 18 chr9 97697432 97697879 -44573565 + L1MC4 LINE L1 7251 7779 -263 317 148 25 25 chr9 97697943 97698024 -44573420 + L1MD2 LINE L1 6266 6346 -13 222 37 0 0 chr9 97698532 97698559 -44572885 + (A)n Simple_repeat Simple_repeat 1 27 0 269 243 142 13 chr9 97699258 97699349 -44572095 + MIR SINE MIR 58 153 -62 2162 94 21 0 chr9 97699455 97699743 -44571701 - AluSc SINE Alu -15 294 1 329 314 91 36 chr9 97700370 97700622 -44570822 - MLT1J LTR MaLR -42 469 204 270 81 0 0 chr9 97701018 97701055 -44570389 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 0 0 0 chr9 97701323 97701351 -44570093 + AT_rich Low_complexity Low_complexity 1 28 0 2254 118 3 3 chr9 97701507 97701811 -44569633 - AluSx SINE Alu -8 304 1 1907 177 41 0 chr9 97702377 97702721 -44568723 + MLT1A1 LTR MaLR 1 358 -7 838 177 111 0 chr9 97703426 97703607 -44567837 - MER20 DNA MER1_type -17 202 2 408 296 42 21 chr9 97703821 97703963 -44567481 + L2 LINE L2 3144 3288 -25 952 161 16 54 chr9 97704115 97704301 -44567143 + AluJo SINE Alu 121 299 -13 666 247 29 0 chr9 97704773 97704947 -44566497 - MER5A DNA MER1_type -10 179 1 200 136 0 45 chr9 97705661 97705705 -44565739 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 1472 175 25 7 chr9 97706374 97706660 -44564784 - L1MC1 LINE L1 0 6333 6043 252 327 139 18 chr9 97706924 97707089 -44564355 + MIR SINE MIR 25 209 -53 193 302 58 35 chr9 97707796 97707824 -44563620 + L2 LINE L2 3221 3247 -66 828 198 44 6 chr9 97707824 97708006 -44563438 - MER5A DNA MER1_type 0 189 1 193 302 58 35 chr9 97708006 97708063 -44563381 + L2 LINE L2 3247 3308 -5 286 189 0 54 chr9 97709088 97709109 -44562335 - MER116 DNA Mariner 0 80 59 1897 120 38 4 chr9 97709109 97709409 -44562035 + AluSg SINE Alu 6 314 0 286 189 0 54 chr9 97709409 97709460 -44561984 - MER116 DNA Mariner -21 59 11 363 245 43 11 chr9 97709979 97710073 -44561371 + MIR3 SINE MIR 75 171 -37 950 120 8 0 chr9 97710513 97710638 -44560806 + FLAM_C SINE Alu 1 126 -17 654 39 71 0 chr9 97710792 97710919 -44560525 + (TG)n Simple_repeat Simple_repeat 2 137 0 252 316 105 9 chr9 97711058 97711172 -44560272 - MER91A DNA MER1_type -4 192 68 188 281 31 62 chr9 97711462 97711526 -44559918 + L2 LINE L2 3208 3269 -3 267 133 0 0 chr9 97712778 97712823 -44558621 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 535 216 7 7 chr9 97712864 97713012 -44558432 + GA-rich Low_complexity Low_complexity 3 150 0 339 178 44 0 chr9 97713126 97713216 -44558228 + GA-rich Low_complexity Low_complexity 3 96 0 189 171 0 0 chr9 97713223 97713258 -44558186 + A-rich Low_complexity Low_complexity 1 35 0 427 300 76 20 chr9 97713446 97713696 -44557748 - L2 LINE L2 -21 3292 3029 1276 196 65 15 chr9 97713994 97714331 -44557113 - MLT1A1 LTR MaLR -11 354 1 335 329 38 42 chr9 97714331 97714544 -44556900 - L3 LINE CR1 -137 1440 1229 215 368 0 0 chr9 97714637 97714713 -44556731 + MIR SINE MIR 158 233 -29 352 253 33 0 chr9 97714723 97714814 -44556630 - L3 LINE CR1 -324 1253 1160 362 69 17 0 chr9 97715008 97715066 -44556378 + (TC)n Simple_repeat Simple_repeat 1 59 0 269 243 142 13 chr9 97715482 97715573 -44555871 + MIR SINE MIR 58 153 -62 2172 90 13 20 chr9 97715679 97715978 -44555466 - AluSx SINE Alu -15 297 1 1347 222 3 16 chr9 97717102 97717408 -44554036 + L1ME1 LINE L1 5524 5825 -341 1678 148 20 20 chr9 97717408 97717706 -44553738 + AluJb SINE Alu 1 298 -14 1371 124 0 42 chr9 97717707 97717924 -44553520 + AluSx SINE Alu 1 208 -104 1500 177 3 3 chr9 97718024 97718306 -44553138 - L1MC1 LINE L1 -228 6105 5824 2077 99 34 7 chr9 97718306 97718598 -44552846 - AluSg SINE Alu -10 300 1 254 319 11 0 chr9 97718628 97718722 -44552722 - Charlie8 DNA MER1_type -1944 473 379 340 332 84 57 chr9 97719358 97719408 -44552036 + L1MB7 LINE L1 5285 5332 -1027 2189 87 28 3 chr9 97719408 97719695 -44551749 + AluSg SINE Alu 1 294 -16 340 332 84 57 chr9 97719695 97719942 -44551502 + L1MB7 LINE L1 5332 5590 -769 539 226 24 30 chr9 97719945 97720109 -44551335 + L1MB7 LINE L1 6021 6183 -1 219 255 0 0 chr9 97720110 97720157 -44551287 - MIR SINE MIR -190 72 26 221 232 36 18 chr9 97721349 97721405 -44550039 - L2 LINE L2 0 3313 3257 754 200 135 5 chr9 97721679 97721864 -44549580 - MER3 DNA MER1_type 0 209 1 2809 90 0 3 chr9 97722124 97722489 -44548955 - THE1B LTR MaLR 0 364 1 3953 187 108 22 chr9 97722556 97722630 -44548814 - L1M4c LINE L1 -4786 2173 2107 2403 85 3 0 chr9 97722630 97722925 -44548519 + AluY SINE Alu 1 296 -15 3953 187 108 22 chr9 97722925 97724215 -44547229 - L1M4c LINE L1 -4852 2107 703 1543 242 68 75 chr9 97724275 97724818 -44546626 - MER77 LTR ERV1 -7 598 96 1713 267 66 54 chr9 97724906 97725115 -44546329 - L1M4c LINE L1 -6256 603 398 1570 177 54 4 chr9 97725115 97725392 -44546052 + AluJb SINE Alu 1 291 -21 1713 267 66 54 chr9 97725392 97725403 -44546041 - L1M4c LINE L1 -6461 398 389 3737 68 12 2 chr9 97725403 97725887 -44545557 + L1PA10 LINE L1 5675 6163 -5 1713 267 66 54 chr9 97725887 97726242 -44545202 - L1M4c LINE L1 -6470 389 20 1806 168 0 20 chr9 97726259 97726557 -44544887 - AluJb SINE Alu -20 292 1 2532 64 0 0 chr9 97726566 97726864 -44544580 - AluY SINE Alu -13 298 1 1731 209 86 4 chr9 97726865 97727330 -44544114 - Charlie4a DNA MER1_type -4 504 2 2138 102 56 0 chr9 97727350 97727634 -44543810 + AluSx SINE Alu 1 300 -12 227 241 115 35 chr9 97727703 97727790 -44543654 - MER5A DNA MER1_type -80 109 16 1990 107 42 0 chr9 97728013 97728275 -44543169 + AluSx SINE Alu 10 282 -30 189 0 0 0 chr9 97728275 97728296 -44543148 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 2298 98 0 13 chr9 97729125 97729430 -44542014 + AluSg SINE Alu 1 301 -9 546 243 18 0 chr9 97729876 97729987 -44541457 - FLAM_A SINE Alu -29 113 1 1676 197 3 0 chr9 97730230 97730524 -44540920 - AluJo SINE Alu -17 295 1 706 189 6 85 chr9 97730853 97731017 -44540427 - FRAM SINE Alu -15 151 1 762 221 36 44 chr9 97731402 97731651 -44539793 - L1ME2 LINE L1 -18 6146 5900 1190 252 105 52 chr9 97731652 97732167 -44539277 + MLT1F LTR MaLR 1 542 0 757 280 85 72 chr9 97732438 97733120 -44538324 + L1MC/D LINE L1 328 1018 -5101 932 287 80 6 chr9 97733177 97733501 -44537943 + L1MC/D LINE L1 5275 5622 -2169 199 303 34 11 chr9 97733680 97733769 -44537675 + L2 LINE L2 2680 2770 -544 1042 113 0 0 chr9 97733864 97733997 -44537447 - AluSg/x SINE Alu -16 294 162 1184 194 116 12 chr9 97734097 97734355 -44537089 - AluSg SINE Alu -15 285 1 485 322 102 30 chr9 97734355 97734595 -44536849 + L2 LINE L2 2884 3166 -147 2249 113 0 0 chr9 97734595 97734886 -44536558 - AluSx SINE Alu -16 296 6 485 322 102 30 chr9 97734886 97735046 -44536398 + L2 LINE L2 3166 3313 0 2080 109 0 31 chr9 97735598 97735757 -44535687 - AluSg SINE Alu -25 285 138 2237 112 3 3 chr9 97735757 97736053 -44535391 - AluSg SINE Alu -14 296 1 2080 109 0 31 chr9 97736053 97736187 -44535257 - AluSg SINE Alu -172 138 1 279 0 0 0 chr9 97736845 97736876 -44534568 + (CA)n Simple_repeat Simple_repeat 2 32 0 786 178 81 0 chr9 97736956 97737130 -44534314 - MER53 DNA DNA 0 189 2 438 20 0 0 chr9 97737222 97737273 -44534171 + (TG)n Simple_repeat Simple_repeat 2 52 0 698 289 24 5 chr9 97737737 97737945 -44533499 + MIR SINE MIR 28 239 -23 7498 103 21 12 chr9 97738707 97739039 -44532405 + MER41A-int LTR ERV1 4851 5178 -768 2286 111 0 0 chr9 97739039 97739336 -44532108 - AluSx SINE Alu -15 297 1 7498 103 21 12 chr9 97739336 97740087 -44531357 + MER41A-int LTR ERV1 5178 5944 -2 3966 89 9 39 chr9 97740087 97740260 -44531184 + MER41A LTR ERV1 1 178 -376 2265 121 0 0 chr9 97740260 97740557 -44530887 + AluSx SINE Alu 1 297 -15 3966 89 9 39 chr9 97740557 97740605 -44530839 + MER41A LTR ERV1 178 226 -328 2142 137 0 3 chr9 97740605 97740911 -44530533 + AluSx SINE Alu 1 305 -7 3966 89 9 39 chr9 97740911 97741259 -44530185 + MER41A LTR ERV1 226 554 0 366 188 135 0 chr9 97741389 97741485 -44529959 - LTR33 LTR ERVL -354 167 59 2481 71 0 0 chr9 97741628 97741923 -44529521 + AluY SINE Alu 1 295 -16 23 33 0 0 chr9 97742376 97742406 -44529038 + AT_rich Low_complexity Low_complexity 1 30 0 1829 134 7 46 chr9 97742513 97742820 -44528624 + AluSx SINE Alu 1 295 -17 1569 178 33 26 chr9 97742949 97743252 -44528192 + AluJb SINE Alu 1 305 -7 4516 157 49 26 chr9 97743278 97743453 -44527991 + L1MB2 LINE L1 5271 5441 -730 748 144 48 0 chr9 97743453 97743578 -44527866 + FLAM_A SINE Alu 1 131 -2 4516 157 49 26 chr9 97743578 97744283 -44527161 + L1MB2 LINE L1 5441 6171 0 1880 148 25 3 chr9 97744287 97744571 -44526873 - AluJb SINE Alu -22 290 1 333 259 105 31 chr9 97744639 97744801 -44526643 - MIR3 SINE MIR -15 193 20 2245 110 0 7 chr9 97745003 97745303 -44526141 + AluSx SINE Alu 1 298 -14 1807 165 14 14 chr9 97747008 97747305 -44524139 + AluJo SINE Alu 1 297 -15 2396 93 0 3 chr9 97747489 97747789 -44523655 - AluSx SINE Alu -11 301 3 2438 81 0 3 chr9 97748416 97748723 -44522721 + AluSg SINE Alu 1 306 -4 316 289 104 24 chr9 97748728 97748939 -44522505 + L1M4 LINE L1 4349 4576 -1570 424 246 94 43 chr9 97748965 97749017 -44522427 - L1ME4a LINE L1 -237 5884 5836 1537 133 95 56 chr9 97749017 97749302 -44522142 - AluJb SINE Alu -16 296 1 424 246 94 43 chr9 97749302 97749525 -44521919 - L1ME4a LINE L1 -285 5836 5595 1346 228 46 54 chr9 97749578 97749794 -44521650 - MLT1A2 LTR MaLR -1 373 160 2040 139 10 0 chr9 97749794 97750095 -44521349 - AluJb SINE Alu -8 304 1 1346 228 46 54 chr9 97750095 97750251 -44521193 - MLT1A2 LTR MaLR -214 160 4 2441 93 0 0 chr9 97750427 97750737 -44520707 + AluSq SINE Alu 1 310 -3 2383 93 3 0 chr9 97750757 97751059 -44520385 + AluSg SINE Alu 1 303 -7 812 163 7 14 chr9 97751788 97751929 -44519515 - FLAM_C SINE Alu -3 140 1 218 326 54 0 chr9 97752146 97752238 -44519206 + MIR SINE MIR 116 212 -50 345 86 0 5 chr9 97752334 97752382 -44519062 - MLT2D LTR ERVL 0 397 358 291 71 0 0 chr9 97752382 97752424 -44519020 + (CA)n Simple_repeat Simple_repeat 1 42 0 270 208 9 28 chr9 97752435 97752541 -44518903 + GA-rich Low_complexity Low_complexity 1 104 0 1776 206 16 22 chr9 97752541 97752909 -44518535 - MLT2D LTR ERVL -48 366 1 7548 199 97 34 chr9 97752909 97753414 -44518030 - L1MDa LINE L1 -4425 2115 1643 1891 144 65 0 chr9 97753414 97753706 -44517738 + AluSq SINE Alu 1 311 -2 7548 199 97 34 chr9 97753706 97754087 -44517357 - L1MDa LINE L1 -4897 1643 1287 2309 110 0 0 chr9 97754087 97754387 -44517057 - AluSx SINE Alu -12 300 1 7548 199 97 34 chr9 97754387 97755199 -44516245 - L1MDa LINE L1 -5253 1287 273 2223 84 3 58 chr9 97755199 97755509 -44515935 - AluSq SINE Alu -19 294 2 7548 199 97 34 chr9 97755509 97755775 -44515669 - L1MDa LINE L1 -6267 273 25 693 164 17 0 chr9 97756712 97756828 -44514616 - L1MC1 LINE L1 -6 6327 6210 345 47 0 0 chr9 97756828 97756871 -44514573 + (CA)n Simple_repeat Simple_repeat 1 43 0 1618 162 3 72 chr9 97756926 97757103 -44514341 - AluJb SINE Alu -1 311 166 2344 78 3 7 chr9 97757103 97757409 -44514035 - AluY SINE Alu -6 305 1 1618 162 3 72 chr9 97757409 97757565 -44513879 - AluJb SINE Alu -146 166 1 2048 209 73 27 chr9 97757757 97758306 -44513138 - L1MB7 LINE L1 0 6184 5611 2262 82 0 0 chr9 97758325 97758634 -44512810 - AluY SINE Alu 0 309 1 393 179 147 0 chr9 97758777 97758872 -44512572 + LTR33 LTR ERVL 59 167 -354 3972 89 9 37 chr9 97759002 97759349 -44512095 - MER41A LTR ERV1 0 554 199 2177 134 0 3 chr9 97759349 97759656 -44511788 - AluSx SINE Alu -6 306 1 3972 89 9 37 chr9 97759656 97759704 -44511740 - MER41A LTR ERV1 -355 199 151 2265 121 0 0 chr9 97759704 97760001 -44511443 - AluSx SINE Alu -15 297 1 3972 89 9 37 chr9 97760001 97760174 -44511270 - MER41A LTR ERV1 -403 151 1 12953 99 46 29 chr9 97760174 97760924 -44510520 - MER41A-int LTR ERV1 -2 5944 5208 2295 111 0 0 chr9 97760924 97761222 -44510222 + AluSx SINE Alu 1 298 -14 12953 99 46 29 chr9 97761222 97761823 -44509621 - MER41A-int LTR ERV1 -738 5208 4618 1994 117 38 17 chr9 97761823 97762114 -44509330 - AluSg SINE Alu -8 302 6 12953 99 46 29 chr9 97762114 97762756 -44508688 - MER41A-int LTR ERV1 -1328 4618 3988 2366 113 3 0 chr9 97762756 97763067 -44508377 + AluSq SINE Alu 1 312 -1 12953 99 46 29 chr9 97763067 97764184 -44507260 - MER41A-int LTR ERV1 -1958 3988 2606 3892 146 9 46 chr9 97764159 97764816 -44506628 - MER41A-int LTR ERV1 -5313 633 1 * 302 145 342 0 chr9 97764825 97764901 -44506543 - MER41A-int LTR ERV1 -5844 102 1 4059 87 28 0 chr9 97764901 97765440 -44506004 - MER41A LTR ERV1 0 554 1 295 164 75 45 chr9 97765491 97765558 -44505886 + LTR33 LTR ERVL 444 512 -9 4323 140 70 58 chr9 97765779 97765991 -44505453 + MER4D LTR ERV1 1 209 -663 2402 72 0 0 chr9 97765991 97766283 -44505161 + AluY SINE Alu 1 292 -19 4323 140 70 58 chr9 97766283 97766932 -44504512 + MER4D LTR ERV1 209 872 0 5417 156 28 42 chr9 97767624 97768188 -44503256 - L1MA9 LINE L1 -3 6309 5739 270 0 0 0 chr9 97768188 97768218 -44503226 + (TG)n Simple_repeat Simple_repeat 1 30 0 5417 156 28 42 chr9 97768218 97768838 -44502606 - L1MA9 LINE L1 -573 5739 5112 2396 93 0 0 chr9 97768838 97769138 -44502306 - AluY SINE Alu -11 300 1 5417 156 28 42 chr9 97769138 97769918 -44501526 - L1MA9 LINE L1 -1200 5112 4369 734 108 0 0 chr9 97769925 97770027 -44501417 - AluJb SINE Alu -3 309 208 1137 227 73 15 chr9 97770048 97770444 -44501000 - L1M4c LINE L1 -3902 3265 2847 1034 183 0 0 chr9 97770458 97770622 -44500822 - AluJb SINE Alu -10 302 139 22 0 0 0 chr9 97770718 97770740 -44500704 + AT_rich Low_complexity Low_complexity 1 22 0 3342 255 46 20 chr9 97770748 97771577 -44499867 - L1M4c LINE L1 -4167 3001 2099 2119 108 0 68 chr9 97771577 97771901 -44499543 - AluSx SINE Alu -10 302 1 3342 255 46 20 chr9 97771901 97772397 -44499047 - L1M4c LINE L1 -5069 2099 1618 641 324 32 45 chr9 97772431 97772821 -44498623 - L1M4c LINE L1 -5822 1276 98 * 4382 154 43 5 chr9 97772820 97773579 -44497865 - L1MD1 LINE L1 -57 6185 5398 463 43 29 0 chr9 97773584 97773654 -44497790 + (TA)n Simple_repeat Simple_repeat 1 72 0 441 0 0 0 chr9 97773653 97773702 -44497742 + (GA)n Simple_repeat Simple_repeat 2 50 0 * 1915 134 0 28 chr9 97773705 97773989 -44497455 - AluSq SINE Alu -37 276 1 180 0 0 0 chr9 97774323 97774343 -44497101 + (CAA)n Simple_repeat Simple_repeat 2 21 0 493 227 47 31 chr9 97774552 97774680 -44496764 - MLT1J2 LTR MaLR -318 132 3 21 82 0 0 chr9 97774681 97774730 -44496714 + AT_rich Low_complexity Low_complexity 1 49 0 529 321 69 16 chr9 97774765 97775083 -44496361 - L1MC4a LINE L1 -1900 5908 5574 282 73 0 0 chr9 97775764 97775805 -44495639 + (TC)n Simple_repeat Simple_repeat 1 41 0 240 35 0 0 chr9 97775805 97775834 -44495610 + (TG)n Simple_repeat Simple_repeat 2 30 0 361 248 118 121 chr9 97776094 97776146 -44495298 - L1ME3 LINE L1 -217 5945 5894 2363 111 0 0 chr9 97776146 97776453 -44494991 - AluSx SINE Alu -5 307 1 361 248 118 121 chr9 97776453 97776731 -44494713 - L1ME3 LINE L1 -268 5894 5616 1741 183 56 0 chr9 97776759 97777082 -44494362 + MER7A DNA MER2_type 4 342 -4 2246 114 0 0 chr9 97777110 97777408 -44494036 - AluSx SINE Alu -14 298 1 558 276 45 51 chr9 97777415 97777748 -44493696 - L1M4 LINE L1 -2479 3667 3337 284 257 0 14 chr9 97777761 97777831 -44493613 - LTR67 LTR ERVL -53 504 436 2311 105 7 0 chr9 97777851 97778155 -44493289 + AluSx SINE Alu 1 306 -6 861 269 90 58 chr9 97778300 97778617 -44492827 - HAL1 LINE L1 -1260 1247 942 2403 94 0 3 chr9 97778617 97778916 -44492528 + AluSx SINE Alu 1 298 -14 861 269 90 58 chr9 97778916 97779222 -44492222 - HAL1 LINE L1 -1565 942 604 549 248 136 88 chr9 97779288 97779504 -44491940 - HAL1 LINE L1 -2107 400 157 1822 156 18 0 chr9 97779504 97779787 -44491657 + AluJo SINE Alu 1 288 -24 549 248 136 88 chr9 97779787 97779945 -44491499 - HAL1 LINE L1 -2350 157 8 279 277 12 0 chr9 97780017 97780100 -44491344 - L1M4 LINE L1 -2866 3280 3197 317 226 191 15 chr9 97780216 97780415 -44491029 - L1M4 LINE L1 -3577 2569 2336 383 274 48 35 chr9 97780653 97780883 -44490561 - LTR37B LTR ERV1 -25 443 211 234 237 10 82 chr9 97781029 97781126 -44490318 - LTR37B LTR ERV1 -378 90 1 1013 115 0 0 chr9 97781401 97781531 -44489913 + AluSq/x SINE Alu 1 130 -183 1054 143 45 146 chr9 97781943 97782300 -44489144 - L1MA8 LINE L1 -5 6286 5966 2291 76 3 35 chr9 97782316 97782633 -44488811 - AluY SINE Alu 0 311 5 425 247 0 0 chr9 97782809 97782886 -44488558 - MER96 DNA MER1_type? -98 77 1 341 280 26 13 chr9 97782886 97783045 -44488399 + MLT1I LTR MaLR 286 400 -9 321 172 90 48 chr9 97783216 97783333 -44488111 + L1M4 LINE L1 2261 2387 -3759 491 127 13 0 chr9 97783333 97783412 -44488032 + MADE1 DNA Mariner 1 80 0 321 172 90 48 chr9 97783412 97783439 -44488005 + L1M4 LINE L1 2387 2411 -3735 2241 102 0 16 chr9 97783529 97783842 -44487602 + AluSg1 SINE Alu 1 308 -1 1766 106 4 0 chr9 97784577 97784813 -44486631 + AluSx SINE Alu 1 237 -75 402 245 0 11 chr9 97784974 97785068 -44486376 + MLT1I LTR MaLR 317 409 0 1504 132 0 22 chr9 97785299 97785526 -44485918 - AluSc SINE Alu -5 304 83 1439 131 0 9 chr9 97785527 97785741 -44485703 - LTR8A LTR ERV1 -515 212 1 258 176 176 0 chr9 97785741 97785792 -44485652 + MER81 DNA DNA 49 108 -6 279 333 64 32 chr9 97785884 97786196 -44485248 + L1MC4a LINE L1 3917 4238 -1908 2361 98 0 0 chr9 97786351 97786647 -44484797 - AluSg SINE Alu -14 296 1 707 281 132 32 chr9 97786906 97787247 -44484197 + MLT1J1 LTR MaLR 72 446 0 249 284 159 5 chr9 97787908 97788110 -44483334 + L1MC4a LINE L1 5201 5421 -744 1208 132 6 0 chr9 97788124 97788291 -44483153 + AluJo SINE Alu 1 168 -144 336 274 105 95 chr9 97788327 97788707 -44482737 + L1MC4a LINE L1 5665 6048 -1760 2409 114 92 2 chr9 97788860 97789253 -44482191 - MSTA LTR MaLR 0 428 1 2217 108 17 0 chr9 97789406 97789562 -44481882 - AluSx SINE Alu -19 293 128 251 70 0 23 chr9 97789562 97789605 -44481839 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2217 108 17 0 chr9 97789605 97789736 -44481708 - AluSx SINE Alu -184 128 1 614 144 39 10 chr9 97789768 97789872 -44481572 + U6 snRNA snRNA 1 107 0 306 83 42 0 chr9 97789872 97789920 -44481524 + L1MB2 LINE L1 6122 6171 0 2378 103 0 0 chr9 97790398 97790710 -44480734 + AluSx SINE Alu 1 312 0 273 245 237 50 chr9 97790731 97790870 -44480574 + MER46C DNA MER2_type 174 338 0 209 281 0 0 chr9 97790871 97790935 -44480509 + MIR SINE MIR 198 261 -1 25 0 0 0 chr9 97791649 97791674 -44479770 + AT_rich Low_complexity Low_complexity 1 25 0 271 233 198 0 chr9 97791854 97791940 -44479504 + MER91B DNA MER1_type 1 103 -87 23 33 0 0 chr9 97791995 97792025 -44479419 + AT_rich Low_complexity Low_complexity 1 30 0 279 319 33 0 chr9 97792506 97792597 -44478847 + MIR SINE MIR 82 175 -87 838 217 11 5 chr9 97792749 97792933 -44478511 - MER5A DNA MER1_type -4 185 1 2377 105 0 0 chr9 97793519 97793825 -44477619 - AluSg SINE Alu -4 306 1 401 319 60 20 chr9 97794297 97794548 -44476896 - L1ME4a LINE L1 -196 5925 5665 2393 82 0 3 chr9 97795186 97795489 -44475955 - AluSx SINE Alu -10 302 1 290 344 0 0 chr9 97796781 97796871 -44474573 + MIR SINE MIR 47 136 -72 2146 105 14 3 chr9 97796891 97797186 -44474258 + AluSx SINE Alu 1 298 -14 230 191 0 0 chr9 97797481 97797523 -44473921 + MER91B DNA MER1_type 99 140 0 425 273 0 38 chr9 97797602 97797734 -44473710 - MLT1K LTR MaLR -446 142 16 259 204 175 0 chr9 97800905 97801008 -44470436 - MER91A DNA MER1_type -36 160 40 1471 212 13 3 chr9 97801278 97801585 -44469859 - L1MA9 LINE L1 -2 6310 6001 927 291 60 33 chr9 97802881 97803245 -44468199 - MLT1I LTR MaLR -14 395 22 456 294 38 23 chr9 97803538 97803727 -44467717 + MIR SINE MIR 12 198 -57 1820 173 7 10 chr9 97804050 97804432 -44467012 - AluJb SINE Alu 0 386 6 959 180 22 0 chr9 97804717 97804900 -44466544 - MER53 DNA DNA 0 189 3 2581 39 0 0 chr9 97805839 97806144 -44465300 - L1PA8 LINE L1 -2 6170 5866 2150 114 10 0 chr9 97807420 97807710 -44463734 - AluSq SINE Alu -20 293 1 28 61 0 0 chr9 97807872 97807921 -44463523 + AT_rich Low_complexity Low_complexity 1 49 0 1645 140 4 29 chr9 97807970 97808242 -44463202 - AluJo SINE Alu -47 265 1 358 349 40 0 chr9 97808596 97808748 -44462696 - MIR SINE MIR -54 208 51 369 0 0 0 chr9 97809534 97809575 -44461869 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2155 118 0 0 chr9 97809575 97809855 -44461589 - AluSx SINE Alu -32 280 1 1982 147 3 17 chr9 97809980 97810279 -44461165 + AluJb SINE Alu 1 295 -17 2682 121 137 94 chr9 97810889 97811526 -44459918 - MER4A LTR ERV1 0 664 1 678 261 73 37 chr9 97811799 97812133 -44459311 - MLT1G3 LTR MaLR -196 394 14 550 255 163 15 chr9 97812581 97812777 -44458667 - MIR SINE MIR -1 261 37 281 289 71 61 chr9 97813633 97813830 -44457614 + MIR3 SINE MIR 3 201 -7 2763 23 3 0 chr9 97813885 97814195 -44457249 + AluYa5 SINE Alu 1 311 0 324 165 39 58 chr9 97814237 97814340 -44457104 - L1ME4a LINE L1 -46 6075 5975 280 244 100 25 chr9 97814390 97814550 -44456894 - L1ME4a LINE L1 -224 5897 5726 1749 158 27 7 chr9 97814562 97814860 -44456584 + AluJo SINE Alu 1 304 -8 4603 153 8 38 chr9 97814941 97815185 -44456259 - L1MB7 LINE L1 -28 6156 5906 2089 120 0 7 chr9 97815185 97815495 -44455949 - AluSx SINE Alu 0 308 1 4603 153 8 38 chr9 97815495 97816144 -44455300 - L1MB7 LINE L1 -278 5906 5289 379 271 64 36 chr9 97816144 97816201 -44455243 - L1ME4a LINE L1 -441 5680 5626 1924 136 0 57 chr9 97816201 97816518 -44454926 - AluSq SINE Alu -14 299 1 379 271 64 36 chr9 97816518 97816600 -44454844 - L1ME4a LINE L1 -495 5626 5537 1027 156 0 97 chr9 97816604 97816842 -44454602 + MER20 DNA MER1_type 1 215 -4 743 228 106 125 chr9 97817270 97817734 -44453710 - MLT1J LTR MaLR -49 462 8 487 168 27 74 chr9 97818165 97818314 -44453130 - L1MC5 LINE L1 -41 7920 7779 1592 193 48 3 chr9 97818424 97818777 -44452667 - L1ME2 LINE L1 -191 5973 5605 2557 81 0 0 chr9 97819129 97819439 -44452005 - AluSg SINE Alu 0 310 1 1298 277 107 12 chr9 97819695 97820096 -44451348 - MLT1G LTR MaLR 0 590 152 5084 201 35 52 chr9 97820127 97820505 -44450939 - L1ME4a LINE L1 -743 5403 5020 1712 173 0 17 chr9 97820505 97820805 -44450639 - AluJo SINE Alu 0 312 18 5084 201 35 52 chr9 97820805 97821836 -44449608 - L1ME4a LINE L1 -1126 5020 4017 389 256 153 0 chr9 97821840 97821977 -44449467 - L1ME4a LINE L1 -295 5826 5669 1219 260 183 4 chr9 97821993 97822497 -44448947 + L2 LINE L2 1476 2069 -1245 251 236 0 0 chr9 97823531 97823586 -44447858 - MIR SINE MIR -110 152 98 203 244 64 92 chr9 97824225 97824356 -44447088 + MER5B DNA MER1_type 1 138 -51 639 248 76 55 chr9 97824378 97824696 -44446748 - L1ME1 LINE L1 -4 6162 5838 1741 88 0 4 chr9 97824696 97824934 -44446510 + AluSq SINE Alu 1 237 -76 639 248 76 55 chr9 97824934 97824956 -44446488 - L1ME1 LINE L1 -328 5838 5818 398 245 0 11 chr9 97825079 97825173 -44446271 + MLT1I LTR MaLR 317 409 0 1416 132 0 22 chr9 97825404 97825631 -44445813 - AluSc SINE Alu -5 304 83 1430 131 0 9 chr9 97825632 97825846 -44445598 - LTR8A LTR ERV1 -515 212 1 258 176 176 0 chr9 97825846 97825897 -44445547 + MER81 DNA DNA 49 108 -6 276 349 55 22 chr9 97825989 97826301 -44445143 + L1MC4a LINE L1 3917 4238 -1908 187 260 10 125 chr9 97826401 97826456 -44444988 - MIR SINE MIR 0 262 223 2233 98 0 0 chr9 97826456 97826752 -44444692 - AluSg SINE Alu -14 296 1 187 260 10 125 chr9 97826752 97826800 -44444644 - MIR SINE MIR -39 223 171 721 281 132 32 chr9 97827011 97827352 -44444092 + MLT1J1 LTR MaLR 72 446 0 418 333 76 64 chr9 97827352 97827974 -44443470 + L1MC4a LINE L1 4423 5051 -1095 246 284 159 5 chr9 97828013 97828215 -44443229 + L1MC4a LINE L1 5201 5421 -744 1137 132 6 0 chr9 97828229 97828396 -44443048 + AluJo SINE Alu 1 168 -144 521 274 105 95 chr9 97828432 97828812 -44442632 + L1MC4a LINE L1 5665 6048 -1760 2333 125 92 2 chr9 97828965 97829358 -44442086 - MSTA LTR MaLR 0 428 1 2055 107 17 3 chr9 97829511 97829667 -44441777 - AluSx SINE Alu -19 293 130 251 70 0 23 chr9 97829667 97829710 -44441734 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2055 107 17 3 chr9 97829710 97829842 -44441602 - AluSx SINE Alu -182 130 1 608 144 39 10 chr9 97829874 97829978 -44441466 + U6 snRNA snRNA 1 107 0 301 83 42 0 chr9 97829978 97830026 -44441418 + L1MB2 LINE L1 6122 6171 0 2250 103 0 0 chr9 97830504 97830816 -44440628 + AluSx SINE Alu 1 312 0 279 252 237 50 chr9 97830837 97830976 -44440468 + MER46C DNA MER2_type 174 338 0 234 281 0 0 chr9 97830977 97831041 -44440403 + MIR SINE MIR 198 261 -1 285 302 52 21 chr9 97831960 97832056 -44439388 - MER91C DNA MER1_type 0 140 42 23 33 0 0 chr9 97832101 97832131 -44439313 + AT_rich Low_complexity Low_complexity 1 30 0 347 320 24 24 chr9 97832612 97832737 -44438707 + MIR SINE MIR 82 206 -56 850 217 11 5 chr9 97832855 97833039 -44438405 - MER5A DNA MER1_type -4 185 1 2252 105 0 0 chr9 97833625 97833931 -44437513 - AluSg SINE Alu -4 306 1 307 299 112 15 chr9 97834250 97834384 -44437060 - L1ME4a LINE L1 -5 6116 5970 398 319 60 20 chr9 97834399 97834650 -44436794 - L1ME4a LINE L1 -196 5925 5665 1992 117 3 3 chr9 97835288 97835588 -44435856 - AluSx SINE Alu -12 300 1 315 298 6 81 chr9 97836883 97836989 -44434455 + MIR3 SINE MIR 50 142 -66 2022 105 14 3 chr9 97836989 97837284 -44434160 + AluSx SINE Alu 1 298 -14 315 298 6 81 chr9 97837284 97837338 -44434106 + MIR3 SINE MIR 142 198 -10 247 191 0 0 chr9 97837580 97837622 -44433822 + MER91B DNA MER1_type 99 140 0 429 273 0 38 chr9 97837701 97837833 -44433611 - MLT1K LTR MaLR -446 142 16 188 374 52 52 chr9 97841110 97841265 -44430179 - L3b LINE CR1 -13 1570 1416 243 188 0 43 chr9 97841287 97841356 -44430088 - L2 LINE L2 -122 3191 3126 1477 160 19 42 chr9 97841384 97841691 -44429753 - AluJo SINE Alu -12 300 1 2394 41 0 10 chr9 97841733 97842027 -44429417 + AluY SINE Alu 1 291 -20 1948 122 0 3 chr9 97842027 97842385 -44429059 - AluSc SINE Alu 0 309 1 2286 57 7 10 chr9 97843042 97843343 -44428101 + AluY SINE Alu 1 300 -11 2117 102 0 0 chr9 97843483 97843776 -44427668 + AluSg SINE Alu 1 293 -17 1885 90 86 4 chr9 97844523 97844802 -44426642 - AluSc SINE Alu -6 303 2 484 325 92 12 chr9 97845021 97845359 -44426085 + L1ME LINE L1 5406 5770 -351 216 0 0 0 chr9 97845586 97845610 -44425834 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1783 127 14 0 chr9 97845613 97845888 -44425556 - AluSg SINE Alu -31 279 1 889 265 15 8 chr9 97845956 97846224 -44425220 - L1MA4 LINE L1 0 6300 6031 784 168 144 59 chr9 97846513 97846715 -44424729 + MER20 DNA MER1_type 1 219 0 1523 122 11 34 chr9 97846730 97846992 -44424452 + MER44D DNA MER2_type 1 526 -83 236 296 25 0 chr9 97846991 97847072 -44424372 + MER8 DNA MER2_type 111 193 -46 * 496 155 48 0 chr9 97847263 97847347 -44424097 + MER44D DNA MER2_type 518 605 0 1560 96 55 0 chr9 97848766 97848984 -44422460 + MER30 DNA MER1_type 1 230 0 1656 129 66 0 chr9 97851418 97851689 -44419755 + AluJo SINE Alu 1 289 -23 230 0 33 0 chr9 97851692 97851722 -44419722 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr9 97852141 97852166 -44419278 + GC_rich Low_complexity Low_complexity 1 25 0 304 266 9 18 chr9 97852678 97852787 -44418657 + L1ME4a LINE L1 5984 6091 -30 384 194 86 11 chr9 97852976 97853069 -44418375 - MIR SINE MIR -39 223 124 1000 215 53 0 chr9 97853164 97853373 -44418071 - MER58A DNA MER1_type 0 224 5 2145 109 3 3 chr9 97853500 97853804 -44417640 + AluSg SINE Alu 1 304 -6 384 279 61 12 chr9 97853825 97853990 -44417454 + L1MB3 LINE L1 5122 5294 -852 245 303 8 8 chr9 97854028 97854150 -44417294 + L1MB3 LINE L1 5356 5477 -2331 1363 141 180 0 chr9 97854265 97854521 -44416923 - MER46B DNA MER2_type -1 235 59 919 139 0 0 chr9 97854528 97854665 -44416779 - FRAM SINE Alu -19 157 21 374 150 0 0 chr9 97854681 97854741 -44416703 - MER46B DNA MER2_type -300 61 2 255 277 30 0 chr9 97854771 97854872 -44416572 + L1M4 LINE L1 2914 3017 -3129 1654 162 3 3 chr9 97857645 97857941 -44413503 - AluJb SINE Alu -12 300 5 540 282 115 0 chr9 97857947 97858103 -44413341 - MER5A DNA MER1_type -6 183 10 401 247 21 0 chr9 97858242 97858339 -44413105 - MER117 DNA MER1_type -91 106 8 206 271 82 49 chr9 97858345 97858467 -44412977 + MIR3 SINE MIR 31 156 -52 757 193 100 7 chr9 97858527 97858677 -44412767 - MLT1A2 LTR MaLR -11 363 200 1170 192 47 47 chr9 97858679 97858976 -44412468 - MLT1A2 LTR MaLR -77 297 1 295 276 35 36 chr9 97858980 97859123 -44412321 - MER5A DNA MER1_type -37 152 1 2144 221 29 6 chr9 97859885 97860361 -44411083 + L1MD2 LINE L1 5428 5914 -328 2010 124 10 0 chr9 97860361 97860660 -44410784 - AluSx SINE Alu -10 302 1 1054 174 78 82 chr9 97860681 97860963 -44410481 - AluJo SINE Alu -30 282 2 494 233 47 16 chr9 97860963 97861092 -44410352 + L1MD2 LINE L1 5927 6059 -300 2568 208 29 4 chr9 97861093 97861642 -44409802 + L1MB3 LINE L1 5619 6181 -2 258 287 102 48 chr9 97861931 97862098 -44409346 + L2 LINE L2 2884 3059 -213 2195 47 54 4 chr9 97862441 97862720 -44408724 + AluY SINE Alu 1 293 -18 507 276 66 31 chr9 97862787 97862983 -44408461 - MIR3 SINE MIR -3 205 3 2449 156 107 18 chr9 97863172 97863684 -44407760 - MER89 LTR ERV1 0 559 2 191 270 27 27 chr9 97863997 97864071 -44407373 + L2 LINE L2 328 401 -2913 244 253 57 60 chr9 97864244 97864352 -44407092 - MER5A DNA MER1_type -4 185 61 429 218 98 0 chr9 97864572 97864705 -44406739 + LTR37A LTR ERV1 268 413 -13 257 151 19 0 chr9 97864717 97864770 -44406674 + (CA)n Simple_repeat Simple_repeat 2 55 0 1313 182 121 8 chr9 97865149 97865413 -44406031 - AluSx SINE Alu -18 294 1 306 0 0 0 chr9 97865442 97865476 -44405968 + (GA)n Simple_repeat Simple_repeat 2 35 0 1812 176 72 66 chr9 97865726 97866181 -44405263 + MER31B LTR ERV1 1 458 -8 867 180 0 0 chr9 97868044 97868194 -44403250 - AluJb SINE Alu -3 309 160 213 333 154 43 chr9 97868576 97868921 -44402523 + L2 LINE L2 2856 3238 -34 235 319 190 0 chr9 97869152 97869268 -44402176 + MIR SINE MIR 58 195 -67 1307 187 37 13 chr9 97869419 97869723 -44401721 + MER33 DNA MER1_type 1 302 -22 2216 90 3 0 chr9 97870941 97871240 -44400204 - AluSx SINE Alu -12 300 1 228 135 0 0 chr9 97871305 97871342 -44400102 + (T)n Simple_repeat Simple_repeat 1 37 0 329 282 0 0 chr9 97872719 97872804 -44398640 + (TG)n Simple_repeat Simple_repeat 1 85 0 207 305 105 69 chr9 97872880 97873046 -44398398 + MIR3 SINE MIR 22 193 -15 2272 113 0 0 chr9 97873420 97873713 -44397731 - AluSx SINE Alu -19 293 1 1960 135 3 27 chr9 97873749 97874046 -44397398 - AluSg SINE Alu -20 290 1 180 287 69 20 chr9 97875368 97875469 -44395975 - MIR SINE MIR -68 194 89 974 193 5 57 chr9 97875501 97875713 -44395731 - MER63A DNA MER1_type -1 209 9 835 261 37 26 chr9 97875792 97876060 -44395384 - Charlie8 DNA MER1_type -2129 288 18 571 236 117 82 chr9 97876407 97876809 -44394635 - MER34 LTR ERV1 -77 465 50 373 171 31 36 chr9 97876791 97876908 -44394536 - Alu SINE Alu -257 46 1 * 2441 50 13 10 chr9 97877009 97877312 -44394132 + AluY SINE Alu 1 304 -7 540 98 87 43 chr9 97877791 97877883 -44393561 - Charlie3 DNA MER1_type 0 2712 2617 2291 106 0 0 chr9 97878050 97878343 -44393101 + AluSx SINE Alu 1 293 -19 497 281 50 53 chr9 97878360 97878702 -44392742 + L1MEd LINE L1 689 1029 -5090 1734 124 8 0 chr9 97879045 97879313 -44392131 - AluSx SINE Alu 0 312 41 471 145 0 24 chr9 97879468 97879551 -44391893 + AluY SINE Alu 2 82 -229 1384 120 15 10 chr9 97879652 97879852 -44391592 + AluSg/x SINE Alu 110 310 -2 795 163 0 0 chr9 97880033 97880162 -44391282 + FLAM_A SINE Alu 1 129 -4 205 285 16 65 chr9 97880693 97880816 -44390628 + MIR SINE MIR 75 191 -71 2023 134 0 16 chr9 97880985 97881291 -44390153 - AluJb SINE Alu -11 301 1 2026 133 7 7 chr9 97881474 97881782 -44389662 + AluSq SINE Alu 1 308 -5 1246 125 0 11 chr9 97882174 97882350 -44389094 + AluJb SINE Alu 127 300 -12 280 191 12 71 chr9 97882367 97882451 -44388993 + L1MC5 LINE L1 7836 7914 -47 21 0 0 0 chr9 97882491 97882512 -44388932 + AT_rich Low_complexity Low_complexity 1 21 0 1471 109 0 0 chr9 97883077 97883269 -44388175 - AluSc SINE Alu -117 192 1 23 86 0 0 chr9 97883355 97883413 -44388031 + AT_rich Low_complexity Low_complexity 1 58 0 2533 80 0 10 chr9 97884197 97884510 -44386934 + AluSg SINE Alu 1 310 0 2217 129 0 0 chr9 97884865 97885174 -44386270 + AluSx SINE Alu 1 309 -3 251 320 171 0 chr9 97885298 97885479 -44385965 + MIR SINE MIR 32 243 -19 197 32 0 32 chr9 97885711 97885742 -44385702 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2189 103 0 57 chr9 97885805 97886136 -44385308 - AluSx SINE Alu 0 312 1 424 254 49 49 chr9 97887043 97887228 -44384216 + L1MC5 LINE L1 7723 7907 -54 21 0 0 0 chr9 97887550 97887571 -44383873 + AT_rich Low_complexity Low_complexity 1 21 0 488 304 38 13 chr9 97888286 97888444 -44383000 - MIR3 SINE MIR -26 182 21 1033 232 93 70 chr9 97889579 97890104 -44381340 - MER34 LTR ERV1 -5 537 1 21 0 0 0 chr9 97890287 97890308 -44381136 + AT_rich Low_complexity Low_complexity 1 21 0 2244 82 29 0 chr9 97890316 97890595 -44380849 + AluSp SINE Alu 1 287 -26 1328 144 0 47 chr9 97890930 97891113 -44380331 - AluJo SINE Alu -107 205 32 3946 81 49 2 chr9 97891113 97891642 -44379802 + MER41A LTR ERV1 1 554 0 1328 144 0 47 chr9 97891642 97891673 -44379771 - AluJo SINE Alu -280 32 1 751 245 56 60 chr9 97891694 97891996 -44379448 + MLT1I LTR MaLR 98 398 -11 334 258 27 36 chr9 97892493 97892690 -44378754 + MER34 LTR ERV1 2 238 -406 * 941 210 176 83 chr9 97892673 97892994 -44378450 + LTR48B LTR ERV1 211 585 -59 2261 106 3 0 chr9 97892994 97893286 -44378158 - AluSx SINE Alu -19 293 1 941 210 176 83 chr9 97893286 97893349 -44378095 + LTR48B LTR ERV1 585 641 -3 1559 179 0 72 chr9 97893637 97893955 -44377489 - AluJo SINE Alu -17 295 1 257 51 26 0 chr9 97895760 97895799 -44375645 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2194 104 0 0 chr9 97895801 97896081 -44375363 - AluSx SINE Alu -30 282 3 1895 116 84 0 chr9 97896217 97896492 -44374952 + AluSx SINE Alu 1 298 -14 359 265 183 18 chr9 97896499 97896778 -44374666 + L1ME4a LINE L1 5615 5939 -182 2148 98 29 0 chr9 97896806 97897107 -44374337 - AluSx SINE Alu 0 309 1 3728 186 21 111 chr9 97897620 97897946 -44373498 + L1M4 LINE L1 4033 4387 -1759 2140 140 3 3 chr9 97897946 97898253 -44373191 + AluSx SINE Alu 1 307 -5 3728 186 21 111 chr9 97898253 97898379 -44373065 + L1M4 LINE L1 4387 4523 -1623 1638 155 23 46 chr9 97898379 97898496 -44372948 + AluJo SINE Alu 3 121 -191 1943 141 7 3 chr9 97898496 97898780 -44372664 - AluSx SINE Alu -27 285 1 1638 155 23 46 chr9 97898780 97898965 -44372479 + AluJo SINE Alu 121 298 -14 2360 89 10 0 chr9 97898965 97899257 -44372187 - AluSq SINE Alu -18 295 1 3728 186 21 111 chr9 97899257 97899399 -44372045 + L1M4 LINE L1 4522 4675 -1471 2046 176 85 0 chr9 97899399 97899797 -44371647 + MSTB1 LTR MaLR 1 432 0 3728 186 21 111 chr9 97899797 97900048 -44371396 + L1M4 LINE L1 4675 4947 -1199 1899 142 0 20 chr9 97900048 97900343 -44371101 + AluJb SINE Alu 1 289 -23 3728 186 21 111 chr9 97900343 97900361 -44371083 + L1M4 LINE L1 4947 4965 -1181 2418 80 13 0 chr9 97900361 97900661 -44370783 + AluSp SINE Alu 1 304 -9 3728 186 21 111 chr9 97900661 97900851 -44370593 + L1M4 LINE L1 4965 4965 -1181 879 186 11 45 chr9 97900851 97901028 -44370416 + FAM SINE Alu 1 171 -4 3728 186 21 111 chr9 97901028 97901217 -44370227 + L1M4 LINE L1 4965 5169 -977 1799 155 40 4 chr9 97901218 97901496 -44369948 + AluJb SINE Alu 1 288 -24 931 161 44 10 chr9 97901512 97901533 -44369911 + L1MB4 LINE L1 5758 5777 -403 260 27 27 0 chr9 97901533 97901570 -44369874 + (TA)n Simple_repeat Simple_repeat 1 38 0 931 161 44 10 chr9 97901570 97901753 -44369691 + L1MB4 LINE L1 5777 5969 -211 866 234 66 16 chr9 97901736 97902040 -44369404 + L1ME3A LINE L1 5004 5322 -824 * 299 227 171 0 chr9 97902050 97902138 -44369306 + L1MC5 LINE L1 6973 7075 -886 1964 138 28 0 chr9 97902168 97902450 -44368994 + AluSx SINE Alu 1 290 -22 2482 57 0 13 chr9 97902484 97902784 -44368660 + AluY SINE Alu 1 296 -15 2209 110 10 0 chr9 97902869 97903160 -44368284 + AluSx SINE Alu 1 294 -18 246 267 0 35 chr9 97903758 97903810 -44367634 + L1ME3A LINE L1 5339 5388 -776 2294 123 0 0 chr9 97903810 97904120 -44367324 + AluSg SINE Alu 1 310 0 246 267 0 35 chr9 97904120 97904153 -44367291 + L1ME3A LINE L1 5388 5421 -743 274 170 0 0 chr9 97904257 97904304 -44367140 - Ricksha DNA DNA -1963 1283 1237 195 239 0 0 chr9 97904306 97904373 -44367071 + (TA)n Simple_repeat Simple_repeat 1 67 0 1715 157 25 14 chr9 97904374 97904660 -44366784 - AluJo SINE Alu -22 290 2 6189 166 37 21 chr9 97904662 97905795 -44365649 - Ricksha DNA DNA -2004 1242 92 1479 138 24 123 chr9 97905800 97906038 -44365406 + MER4A LTR ERV1 1 261 -204 243 0 0 0 chr9 97906038 97906065 -44365379 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1909 122 0 0 chr9 97906066 97906328 -44365116 - AluSx SINE Alu -47 265 4 1479 138 24 123 chr9 97906328 97906546 -44364898 + MER4A LTR ERV1 260 264 -201 272 248 15 44 chr9 97906516 97906634 -44364810 + LTR59 LTR ERV1 344 541 -158 * 1006 169 16 5 chr9 97906640 97906829 -44364615 + MER4C LTR ERV1 275 465 0 2146 137 33 9 chr9 97906830 97907159 -44364285 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr9 97907240 97907263 -44364181 + AT_rich Low_complexity Low_complexity 1 23 0 2359 99 0 0 chr9 97907630 97907932 -44363512 + AluSx SINE Alu 1 302 -10 231 290 0 29 chr9 97907947 97908016 -44363428 + Charlie8 DNA MER1_type 1362 1428 -989 892 226 5 41 chr9 97908295 97908516 -44362928 - MLT1A2 LTR MaLR -7 367 155 1926 146 10 3 chr9 97908518 97908826 -44362618 - AluSx SINE Alu -2 310 1 516 294 67 11 chr9 97908827 97909007 -44362437 + L1ME3A LINE L1 5461 5650 -520 1619 195 30 61 chr9 97909021 97909188 -44362256 + MLT1B LTR MaLR 1 172 -218 1871 161 6 22 chr9 97909188 97909505 -44361939 + AluJo SINE Alu 1 312 0 1619 195 30 61 chr9 97909505 97909732 -44361712 + MLT1B LTR MaLR 172 383 -7 823 180 137 17 chr9 97909753 97909986 -44361458 + L1ME3A LINE L1 5688 5948 -222 2239 119 3 0 chr9 97910009 97910312 -44361132 + AluSp SINE Alu 1 304 -9 23 0 0 0 chr9 97910507 97910530 -44360914 + AT_rich Low_complexity Low_complexity 1 23 0 2306 93 0 7 chr9 97910649 97910950 -44360494 - AluSg SINE Alu -11 299 1 649 220 0 8 chr9 97910952 97911084 -44360360 - AluJo/FLAM SINE Alu -170 132 2 251 345 11 0 chr9 97911144 97911231 -44360213 - L2 LINE L2 -33 3280 3193 567 255 212 0 chr9 97911494 97911678 -44359766 + MER58A DNA MER1_type 1 223 -1 2094 105 0 60 chr9 97911817 97912132 -44359312 + AluSx SINE Alu 1 296 -16 1883 123 55 10 chr9 97912554 97912846 -44358598 + AluSq SINE Alu 1 305 -8 1863 136 20 36 chr9 97912855 97913156 -44358288 + AluJb SINE Alu 1 296 -16 1866 150 20 0 chr9 97913805 97914098 -44357346 + AluJb SINE Alu 1 299 -13 28 0 0 0 chr9 97914111 97914139 -44357305 + AT_rich Low_complexity Low_complexity 1 28 0 1556 93 198 27 chr9 97914301 97914559 -44356885 - AluSg1 SINE Alu -7 302 1 2250 112 0 3 chr9 97914722 97915026 -44356418 + AluSg SINE Alu 1 303 -7 1988 122 4 7 chr9 97915303 97915581 -44355863 + AluSq SINE Alu 22 298 -15 240 211 148 31 chr9 97915668 97915796 -44355648 + MER102a DNA MER1_type 186 328 -2 744 193 0 14 chr9 97916210 97916350 -44355094 - AluJb SINE Alu 0 312 175 478 171 267 0 chr9 97916347 97916452 -44354992 - AluJb SINE Alu -46 266 134 * 250 132 38 0 chr9 97916456 97916509 -44354935 + (TA)n Simple_repeat Simple_repeat 2 56 0 2295 102 0 0 chr9 97916564 97916848 -44354596 - AluSx SINE Alu -28 284 1 907 291 95 23 chr9 97916986 97917529 -44353915 + L1M4 LINE L1 4398 4977 -1169 660 248 62 31 chr9 97917829 97918055 -44353389 + LTR16A LTR ERVL 120 352 -98 2372 99 0 13 chr9 97918158 97918471 -44352973 + AluSx SINE Alu 1 309 -3 2432 81 0 31 chr9 97918966 97919288 -44352156 + AluSx SINE Alu 1 312 0 428 236 5 90 chr9 97919294 97919506 -44351938 + HAL1b LINE L1 904 1097 -251 2941 6 0 0 chr9 97919506 97919817 -44351627 - AluYa5 SINE Alu 0 311 1 552 252 116 43 chr9 97919944 97920245 -44351199 + L1MC4 LINE L1 7278 7717 -325 763 186 112 132 chr9 97920262 97920366 -44351078 + LTR56 LTR ERV1 9 114 -331 2456 84 0 3 chr9 97920366 97920675 -44350769 - AluSx SINE Alu -2 310 3 2242 117 13 0 chr9 97920683 97920990 -44350454 - AluSq SINE Alu -2 311 1 763 186 112 132 chr9 97920990 97921198 -44350246 + LTR56 LTR ERV1 121 321 -124 2273 95 7 3 chr9 97921198 97921494 -44349950 + AluSg SINE Alu 1 297 -13 763 186 112 132 chr9 97921494 97921617 -44349827 + LTR56 LTR ERV1 321 445 0 273 299 0 11 chr9 97921711 97921798 -44349646 + L1MC4 LINE L1 7800 7885 -157 2482 66 0 17 chr9 97922040 97922341 -44349103 + AluSc SINE Alu 1 296 -13 2237 81 0 33 chr9 97922344 97922651 -44348793 + AluY SINE Alu 1 297 -14 1972 92 0 0 chr9 97922783 97923033 -44348411 - AluSx SINE Alu -13 299 50 2073 125 0 0 chr9 97923086 97923382 -44348062 + AluSq SINE Alu 1 296 -17 1032 113 0 0 chr9 97923526 97923668 -44347776 + AluSq/x SINE Alu 1 142 -171 1720 109 4 23 chr9 97923669 97923804 -44347640 + AluSq SINE Alu 1 137 -176 2248 97 0 3 chr9 97923804 97924113 -44347331 + AluSg SINE Alu 1 308 -2 2115 100 0 13 chr9 97924115 97924415 -44347029 + AluSg SINE Alu 1 296 -14 1720 109 4 23 chr9 97924415 97924533 -44346911 + AluSq SINE Alu 138 252 -61 1175 60 78 24 chr9 97924534 97924700 -44346744 - AluSq SINE Alu -138 175 1 2225 187 31 9 chr9 97924993 97925437 -44346007 + MER65C LTR ERV1 8 461 0 359 259 104 22 chr9 97925668 97925803 -44345641 - L2 LINE L2 -2825 489 344 1520 181 22 0 chr9 97925944 97926249 -44345195 + AluJb SINE Alu 3 313 0 1546 163 3 75 chr9 97926419 97926739 -44344705 + AluJb SINE Alu 6 302 -10 1912 128 0 29 chr9 97926806 97927112 -44344332 + AluJo SINE Alu 1 297 -15 2188 101 3 0 chr9 97927689 97927987 -44343457 - AluSx SINE Alu -13 299 1 2106 95 0 54 chr9 97928247 97928563 -44342881 - AluSg SINE Alu -11 299 1 287 279 117 22 chr9 97928754 97928933 -44342511 + L2 LINE L2 2529 2724 -590 654 261 88 55 chr9 97928936 97929587 -44341857 + L2 LINE L2 2561 3311 -2 317 262 40 16 chr9 97929600 97929726 -44341718 + L2 LINE L2 2842 2970 -343 425 305 62 0 chr9 97929796 97929924 -44341520 + L2 LINE L2 3169 3304 -9 185 263 0 0 chr9 97929946 97929984 -44341460 + MIR SINE MIR 115 152 -56 1233 196 90 4 chr9 97929985 97930251 -44341193 + AluJo SINE Alu 1 289 -23 270 0 0 0 chr9 97930257 97930287 -44341157 + (CA)n Simple_repeat Simple_repeat 2 31 0 189 0 0 0 chr9 97930287 97930308 -44341136 + (TA)n Simple_repeat Simple_repeat 1 21 0 297 209 16 12 chr9 97930308 97930390 -44341054 - AluS SINE Alu -245 57 1 22 0 0 0 chr9 97931241 97931263 -44340181 + GC_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr9 97931364 97931421 -44340023 + GC_rich Low_complexity Low_complexity 1 57 0 25 90 0 0 chr9 97931430 97931497 -44339947 + GC_rich Low_complexity Low_complexity 1 67 0 946 239 210 24 chr9 97931764 97932221 -44339223 - L1ME2 LINE L1 -15 6149 5608 2347 38 0 7 chr9 97932365 97932652 -44338792 + AluY SINE Alu 1 285 -26 272 37 74 0 chr9 97932652 97932706 -44338738 + (TA)n Simple_repeat Simple_repeat 2 59 0 31 0 0 0 chr9 97933725 97933756 -44337688 + AT_rich Low_complexity Low_complexity 1 31 0 243 358 100 8 chr9 97936395 97936515 -44334929 - MIR3 SINE MIR -68 140 10 2011 121 3 7 chr9 97936807 97937113 -44334331 + AluSx SINE Alu 1 305 -7 443 165 198 0 chr9 97937143 97937264 -44334180 + L1ME LINE L1 5662 5806 -358 484 184 60 56 chr9 97937265 97937511 -44333933 + L1MA9 LINE L1 5946 6306 -6 1138 142 0 0 chr9 97937511 97937687 -44333757 - AluSg/x SINE Alu -3 307 132 1382 190 36 23 chr9 97937687 97937992 -44333452 - AluSp SINE Alu -4 309 1 260 349 26 11 chr9 97938114 97938346 -44333098 - L2 LINE L2 -411 2903 2624 1809 163 3 3 chr9 97938392 97938698 -44332746 + AluJo SINE Alu 1 306 -6 452 274 252 17 chr9 97938942 97939299 -44332145 - L2 LINE L2 -1 3312 2872 1519 131 0 37 chr9 97939555 97939825 -44331619 - AluSx SINE Alu 0 306 46 1935 117 3 0 chr9 97940593 97940875 -44330569 + AluSx SINE Alu 1 283 -29 2011 110 14 0 chr9 97941032 97941341 -44330103 + AluSx SINE Alu 1 313 0 2294 84 3 0 chr9 97941341 97941640 -44329804 + AluSp SINE Alu 2 301 -12 2564 122 32 0 chr9 97942013 97942423 -44329021 + L1MA2 LINE L1 5882 6304 0 26 30 0 0 chr9 97942492 97942525 -44328919 + AT_rich Low_complexity Low_complexity 1 33 0 1049 146 200 43 chr9 97944381 97944461 -44326983 - MER33 DNA MER1_type -2261 324 258 2156 101 7 0 chr9 97944461 97944757 -44326687 - AluSp SINE Alu -15 298 1 1049 146 200 43 chr9 97944757 97944956 -44326488 - MER33 DNA MER1_type -2327 258 1 248 169 186 17 chr9 97945006 97945065 -44326379 + MIR3 SINE MIR 111 179 -29 2467 62 7 0 chr9 97945600 97945908 -44325536 + AluSg SINE Alu 1 310 0 27 29 0 0 chr9 97946111 97946145 -44325299 + AT_rich Low_complexity Low_complexity 1 34 0 564 183 76 76 chr9 97946200 97946331 -44325113 + FLAM_A SINE Alu 1 131 -2 1071 279 137 54 chr9 97946348 97947094 -44324350 + L1MB5 LINE L1 8 815 -5727 769 167 90 0 chr9 97947181 97947325 -44324119 + FRAM SINE Alu 8 164 -12 2116 127 0 0 chr9 97947327 97947634 -44323810 + AluSx SINE Alu 2 308 -4 1213 211 84 6 chr9 97947635 97947991 -44323453 + L1MB5 LINE L1 855 1238 -5304 1144 167 31 14 chr9 97947991 97948213 -44323231 + AluJo SINE Alu 87 312 0 2094 183 63 51 chr9 97948213 97948746 -44322698 + L1MB5 LINE L1 1209 1734 -4912 1627 173 3 0 chr9 97948746 97949029 -44322415 + AluJb SINE Alu 13 296 -16 2094 183 63 51 chr9 97949029 97949074 -44322370 + L1MB5 LINE L1 1729 1795 -4846 1633 138 0 15 chr9 97949074 97949170 -44322274 + AluSg SINE Alu 39 135 -175 2350 60 17 0 chr9 97949170 97949469 -44321975 + AluSp SINE Alu 1 304 -9 1633 138 0 15 chr9 97949469 97949632 -44321812 + AluSg SINE Alu 135 294 -16 1108 125 0 0 chr9 97949637 97949789 -44321655 + FRAM SINE Alu 1 146 -30 2018 109 0 0 chr9 97949792 97950075 -44321369 + AluSc SINE Alu 27 309 0 950 192 66 33 chr9 97950097 97950231 -44321213 + L1MB5 LINE L1 2923 3051 -3593 2115 88 6 64 chr9 97950231 97950560 -44320884 - AluSq SINE Alu -1 312 3 950 192 66 33 chr9 97950560 97950766 -44320678 + L1MB5 LINE L1 3051 3249 -3395 2081 123 0 0 chr9 97950766 97951058 -44320386 - AluSg SINE Alu -18 292 1 950 192 66 33 chr9 97951058 97951176 -44320268 + L1MB5 LINE L1 3249 3484 -3160 * 2174 222 4 28 chr9 97951170 97951702 -44319742 + L1MB5 LINE L1 5019 5537 -1107 1317 176 120 11 chr9 97951702 97951969 -44319475 + AluSg SINE Alu 1 296 -14 1161 30 0 0 chr9 97951969 97952103 -44319341 + AluY SINE Alu 1 134 -177 2176 63 4 0 chr9 97952103 97952373 -44319071 + AluY SINE Alu 1 271 -40 459 103 0 0 chr9 97952373 97952441 -44319003 + Alu SINE Alu 230 297 -15 1263 177 12 113 chr9 97952441 97952838 -44318606 + L1MB5 LINE L1 5525 5856 -822 2194 76 28 0 chr9 97952838 97953128 -44318316 + AluSq SINE Alu 9 306 -7 1263 177 12 113 chr9 97953128 97953338 -44318106 + L1MB5 LINE L1 5856 6086 -592 1566 188 102 8 chr9 97953369 97953742 -44317702 + L1MB5 LINE L1 6265 6672 0 1077 171 23 9 chr9 97953728 97953945 -44317499 + L1MC3 LINE L1 7566 7785 0 * 2487 54 0 6 chr9 97954509 97954822 -44316622 + AluY SINE Alu 1 311 0 763 178 0 0 chr9 97954828 97954946 -44316498 + FLAM_C SINE Alu 1 118 -15 822 37 65 0 chr9 97955589 97955696 -44315748 - AluY SINE Alu -197 114 1 1655 37 9 19 chr9 97955760 97955771 -44315673 + L1PA5 LINE L1 5940 5950 -204 351 0 0 0 chr9 97955771 97955810 -44315634 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1655 37 9 19 chr9 97955810 97956013 -44315431 + L1PA5 LINE L1 5950 6152 -2 21 0 0 0 chr9 97956013 97956034 -44315410 + AT_rich Low_complexity Low_complexity 1 21 0 2207 169 73 63 chr9 97956045 97956565 -44314879 + L1MB2 LINE L1 5640 6164 -7 303 204 0 0 chr9 97956647 97956696 -44314748 + MLT1I LTR MaLR 98 146 -263 2090 162 91 5 chr9 97956696 97957091 -44314353 + MSTB1 LTR MaLR 4 432 0 227 376 51 0 chr9 97957114 97957231 -44314213 + MLT1I LTR MaLR 200 322 -87 2069 62 58 0 chr9 97957784 97958059 -44313385 + AluY SINE Alu 1 291 -20 2518 48 0 3 chr9 97958070 97958379 -44313065 + AluY SINE Alu 1 308 -3 2108 82 0 14 chr9 97958384 97958665 -44312779 + AluSc SINE Alu 1 277 -32 275 0 29 0 chr9 97958666 97958701 -44312743 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1484 154 70 11 chr9 97958705 97958990 -44312454 + AluJb SINE Alu 1 302 -10 1287 172 31 74 chr9 97959056 97959382 -44312062 + AluJo SINE Alu 1 312 0 1208 119 0 0 chr9 97959611 97959787 -44311657 - AluSg/x SINE Alu -5 305 130 2171 121 0 6 chr9 97960474 97960788 -44310656 - AluSx SINE Alu 0 312 1 259 259 183 53 chr9 97960884 97961015 -44310429 + MIR SINE MIR 2 149 -113 191 176 29 0 chr9 97961065 97961099 -44310345 - MIR SINE MIR -8 254 220 2175 80 7 0 chr9 97962277 97962566 -44308878 - AluSc SINE Alu -18 291 1 2239 55 3 42 chr9 97962844 97963154 -44308290 - AluY SINE Alu -11 300 3 2417 70 0 3 chr9 97963276 97963588 -44307856 - AluSx SINE Alu 0 312 2 1098 169 165 0 chr9 97963618 97963854 -44307590 - AluJo SINE Alu -37 275 1 2280 77 3 0 chr9 97963866 97964176 -44307268 - AluY SINE Alu 0 311 1 21 0 0 0 chr9 97964254 97964275 -44307169 + AT_rich Low_complexity Low_complexity 1 21 0 261 320 33 33 chr9 97964494 97964616 -44306828 - L2 LINE L2 0 3272 3151 445 274 59 26 chr9 97964661 97964814 -44306630 + MIR3 SINE MIR 30 187 -21 189 0 0 0 chr9 97965373 97965394 -44306050 + (CCCG)n Simple_repeat Simple_repeat 4 24 0 218 225 9 36 chr9 97965457 97965568 -44305876 + (CGG)n Simple_repeat Simple_repeat 2 109 0 180 0 0 0 chr9 97965767 97965787 -44305657 + (CGG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr9 97966292 97966313 -44305131 + GC_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 97966579 97966609 -44304835 + GC_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr9 97966655 97966679 -44304765 + GC_rich Low_complexity Low_complexity 1 24 0 293 183 110 61 chr9 97967255 97967337 -44304107 + L2 LINE L2 3228 3313 0 4297 80 4 2 chr9 97968639 97969192 -44302252 + MER41A LTR ERV1 1 554 0 2221 71 0 14 chr9 97969291 97969586 -44301858 + AluY SINE Alu 1 291 -20 201 94 0 0 chr9 97969586 97969618 -44301826 + (TA)n Simple_repeat Simple_repeat 1 32 0 370 209 0 122 chr9 97969618 97969733 -44301711 + L1MC4 LINE L1 6609 6709 -1333 1965 131 0 10 chr9 97969863 97970176 -44301268 + AluSx SINE Alu 1 310 -2 335 238 0 76 chr9 97970210 97970315 -44301129 - L1MC4 LINE L1 -1337 6705 6609 260 138 77 0 chr9 97970329 97970459 -44300985 + (TA)n Simple_repeat Simple_repeat 1 140 0 2326 67 0 7 chr9 97970468 97970766 -44300678 - AluY SINE Alu -15 296 1 1942 142 0 0 chr9 97970768 97971070 -44300374 - AluSx SINE Alu -10 302 1 830 181 57 6 chr9 97971117 97971294 -44300150 - AluJo SINE Alu -106 206 21 443 252 67 15 chr9 97971375 97971510 -44299934 - MLT1H LTR MaLR -387 162 21 1798 174 33 33 chr9 97971616 97971949 -44299495 + MER1B DNA MER1_type 5 337 0 231 204 0 0 chr9 97972336 97972385 -44299059 + (TA)n Simple_repeat Simple_repeat 2 50 0 370 267 23 0 chr9 97972486 97972572 -44298872 - L1MC4 LINE L1 -1341 6701 6614 4895 138 83 10 chr9 97972573 97972881 -44298563 + Tigger4(Zombi) DNA MER2_type 1710 1994 -737 2203 102 7 0 chr9 97972881 97973186 -44298258 + AluSp SINE Alu 1 307 -6 4895 138 83 10 chr9 97973186 97973794 -44297650 + Tigger4(Zombi) DNA MER2_type 1994 2697 -34 976 93 0 7 chr9 97973794 97973934 -44297510 + AluSg/x SINE Alu 162 300 -10 345 246 138 30 chr9 97974042 97974209 -44297235 + L1M4 LINE L1 5120 5304 -842 1474 178 0 11 chr9 97974213 97974483 -44296961 + AluJb SINE Alu 6 272 -40 1193 208 11 11 chr9 97974483 97974747 -44296697 + L1M4 LINE L1 5558 5821 -363 1023 227 24 57 chr9 97974801 97974816 -44296628 + L1MD3 LINE L1 7665 7679 -316 2118 110 0 3 chr9 97974816 97975117 -44296327 + AluSg SINE Alu 1 300 -10 1023 227 24 57 chr9 97975117 97975432 -44296012 + L1MD3 LINE L1 7679 7984 -11 2090 128 0 0 chr9 97975997 97976303 -44295141 - AluSx SINE Alu -2 310 5 819 147 35 0 chr9 97976593 97976736 -44294708 + FAM SINE Alu 23 170 -15 240 163 0 0 chr9 97976737 97976780 -44294664 + (TA)n Simple_repeat Simple_repeat 2 44 0 345 221 0 13 chr9 97976884 97976962 -44294482 + L1MC4 LINE L1 1995 6971 -1351 337 300 11 11 chr9 97976890 97976966 -44294478 - L1MC4 LINE L1 -1339 6703 6625 * 1095 139 0 0 chr9 97976966 97977146 -44294298 + (TA)n Simple_repeat Simple_repeat 1 180 0 337 300 11 11 chr9 97977146 97977159 -44294285 - L1MC4 LINE L1 -1416 6626 6614 * 380 303 0 0 chr9 97977152 97977241 -44294203 + L1MC4 LINE L1 6615 6703 -1339 371 322 0 0 chr9 97977225 97977315 -44294129 - L1MC4 LINE L1 -1339 6703 6614 * 367 258 0 16 chr9 97977285 97977388 -44294056 + L1MC4 LINE L1 1995 6983 -1339 * 240 120 40 0 chr9 97977389 97977439 -44294005 - L1MC4 LINE L1 -1339 6703 6652 2313 74 0 7 chr9 97977440 97977737 -44293707 - AluSx SINE Alu -17 295 1 9263 111 35 8 chr9 97977737 97979078 -44292366 - Tigger4(Zombi) DNA MER2_type -1354 1377 1 490 309 58 8 chr9 97979085 97979344 -44292100 - L1M4 LINE L1 -1988 4158 3887 2134 63 39 0 chr9 97979345 97979629 -44291815 - AluY SINE Alu -16 295 1 2261 60 3 77 chr9 97979636 97979972 -44291472 - AluY SINE Alu 0 311 1 699 97 0 0 chr9 97979973 97980066 -44291378 - AluS SINE Alu -219 94 2 1933 125 3 30 chr9 97980315 97980618 -44290826 - AluSx SINE Alu -17 295 1 396 322 23 46 chr9 97980806 97980980 -44290464 - MIR SINE MIR -44 218 49 644 234 149 0 chr9 97981311 97981499 -44289945 - L2 LINE L2 -4 3309 3094 724 176 66 0 chr9 97981517 97981653 -44289791 + FRAM SINE Alu 1 144 -32 2199 98 0 3 chr9 97981653 97981950 -44289494 - AluSg1 SINE Alu -13 296 1 186 43 0 0 chr9 97981963 97981986 -44289458 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 403 247 6 82 chr9 97981986 97982144 -44289300 - L2 LINE L2 -248 3065 2920 1643 163 14 11 chr9 97982174 97982457 -44288987 - AluJo SINE Alu -13 299 16 1001 153 18 0 chr9 97982466 97982636 -44288808 + AluSq SINE Alu 120 292 -21 23 33 0 0 chr9 97982750 97982780 -44288664 + AT_rich Low_complexity Low_complexity 1 30 0 920 284 100 41 chr9 97983182 97983644 -44287800 - MLT1F LTR MaLR -35 507 19 594 236 65 0 chr9 97984026 97984149 -44287295 + FLAM_A SINE Alu 1 131 -2 209 33 33 0 chr9 97984150 97984180 -44287264 + (GA)n Simple_repeat Simple_repeat 2 32 0 205 200 0 0 chr9 97984191 97984231 -44287213 + A-rich Low_complexity Low_complexity 1 40 0 1366 267 91 26 chr9 97984342 97984939 -44286505 - MER77 LTR ERV1 -8 597 53 600 256 138 60 chr9 97985056 97985371 -44286073 + MLT1I LTR MaLR 35 381 -28 2115 92 0 14 chr9 97985371 97985666 -44285778 - AluSc SINE Alu -18 291 1 600 256 138 60 chr9 97985666 97985698 -44285746 + MLT1I LTR MaLR 381 409 0 689 235 27 55 chr9 97985704 97985816 -44285628 + MIR SINE MIR 85 192 -70 2304 159 16 0 chr9 97985816 97986200 -44285244 - MLT1B LTR MaLR 0 390 1 689 235 27 55 chr9 97986200 97986270 -44285174 + MIR SINE MIR 192 262 0 1113 85 0 0 chr9 97986436 97986577 -44284867 + AluSq/x SINE Alu 1 141 -171 517 104 0 0 chr9 97986577 97986644 -44284800 - AluSg/x SINE Alu -132 178 112 2161 176 27 27 chr9 97986706 97987148 -44284296 + L1MC1 LINE L1 5886 6327 -6 2178 110 0 3 chr9 97987794 97988103 -44283341 - AluSx SINE Alu -4 308 1 322 336 18 9 chr9 97988134 97988247 -44283197 + MIR SINE MIR 31 144 -64 216 0 0 0 chr9 97988446 97988470 -44282974 + (TG)n Simple_repeat Simple_repeat 1 24 0 1640 115 56 0 chr9 97988478 97988730 -44282714 - AluSq SINE Alu -47 266 1 1651 151 3 63 chr9 97989006 97989172 -44282272 - AluJo SINE Alu -12 300 160 2206 82 17 0 chr9 97989172 97989465 -44281979 - AluSp SINE Alu -15 298 1 1651 151 3 63 chr9 97989465 97989617 -44281827 - AluJo SINE Alu -152 160 1 317 246 68 17 chr9 97989846 97989964 -44281480 + L1ME LINE L1 5658 5781 -340 849 197 24 39 chr9 97989964 97990172 -44281272 + LTR41 LTR ERVL 1 205 -568 498 198 42 0 chr9 97990570 97990666 -44280778 - MER5A DNA MER1_type -83 106 7 2247 68 41 0 chr9 97990854 97991146 -44280298 - AluY SINE Alu -7 304 1 1313 162 0 17 chr9 97991170 97991411 -44280033 - AluJo SINE Alu -1 311 75 2103 112 0 0 chr9 97991464 97991749 -44279695 - AluSq SINE Alu -19 294 10 183 213 64 128 chr9 97991942 97992006 -44279438 + MIR SINE MIR 129 187 -75 2311 68 3 0 chr9 97992006 97992300 -44279144 + AluSp SINE Alu 1 295 -18 183 213 64 128 chr9 97992300 97992329 -44279115 + MIR SINE MIR 187 216 -46 1599 183 3 20 chr9 97992497 97992803 -44278641 - AluJb SINE Alu -11 301 1 569 293 45 20 chr9 97993079 97993325 -44278119 + MLT1K LTR MaLR 14 265 -323 2123 120 0 0 chr9 97993346 97993646 -44277798 + AluSx SINE Alu 1 300 -12 477 239 0 0 chr9 97993655 97993747 -44277697 + AluS SINE Alu 2 93 -219 763 145 65 0 chr9 97995252 97995365 -44276079 + AluSq/x SINE Alu 2 125 -188 423 0 0 0 chr9 97995365 97995412 -44276032 + (CA)n Simple_repeat Simple_repeat 2 48 0 181 115 0 0 chr9 97995768 97995794 -44275650 + MER5A DNA MER1_type 1 26 -163 2458 157 65 4 chr9 97995919 97996383 -44275061 - L1MB5 LINE L1 -36 6138 5647 403 227 19 123 chr9 97996442 97996596 -44274848 - L2 LINE L2 -1 3271 3134 425 255 166 0 chr9 97996678 97996835 -44274609 - MLT1L LTR MaLR -11 604 422 623 279 136 28 chr9 97996861 97997184 -44274260 - MLT1L LTR MaLR -256 359 2 641 299 208 18 chr9 97997267 97997651 -44273793 + L2 LINE L2 2322 2778 -536 221 291 18 0 chr9 97997658 97997713 -44273731 + L2 LINE L2 2902 2957 -357 227 321 0 0 chr9 97997874 97997930 -44273514 + L2 LINE L2 3258 3313 0 210 245 32 11 chr9 97998193 97998287 -44273157 + (CGGGG)n Simple_repeat Simple_repeat 2 97 0 214 247 25 12 chr9 97998504 97998585 -44272859 + (CGG)n Simple_repeat Simple_repeat 3 84 0 22 35 0 0 chr9 97999209 97999238 -44272206 + GC_rich Low_complexity Low_complexity 1 29 0 2363 63 0 0 chr9 98000034 98000333 -44271111 + AluY SINE Alu 2 300 -11 2130 99 6 19 chr9 98000999 98001175 -44270269 - AluSq SINE Alu -3 310 138 1827 91 84 31 chr9 98001175 98001461 -44269983 - AluSc SINE Alu -8 301 1 2130 99 6 19 chr9 98001461 98001598 -44269846 - AluSq SINE Alu -175 138 1 2368 70 3 0 chr9 98002536 98002836 -44268608 - AluY SINE Alu -10 301 1 1469 143 42 35 chr9 98002929 98003215 -44268229 + AluJo SINE Alu 7 294 -18 1919 126 7 29 chr9 98003258 98003568 -44267876 + AluSx SINE Alu 2 304 -8 1838 137 0 7 chr9 98003570 98003862 -44267582 + AluSx SINE Alu 1 290 -22 2062 117 0 0 chr9 98003864 98004169 -44267275 + AluSx SINE Alu 4 308 0 2409 63 0 0 chr9 98004567 98004869 -44266575 + AluY SINE Alu 1 302 -9 378 0 0 0 chr9 98004869 98004911 -44266533 + (TA)n Simple_repeat Simple_repeat 2 43 0 1387 100 219 0 chr9 98005202 98005453 -44265991 + AluSp SINE Alu 1 306 -7 1749 162 0 14 chr9 98005674 98005964 -44265480 + AluSx SINE Alu 1 286 -26 24 53 0 0 chr9 98005968 98006006 -44265438 + AT_rich Low_complexity Low_complexity 1 38 0 2339 68 13 3 chr9 98006702 98007011 -44264433 - AluSp SINE Alu -1 312 1 2022 194 117 38 chr9 98008318 98008891 -44262553 - L1MC4 LINE L1 0 8042 7425 198 306 148 19 chr9 98009086 98009194 -44262250 - MIR SINE MIR -32 230 109 1043 111 35 6 chr9 98009197 98009369 -44262075 + L1MB3 LINE L1 6000 6176 -7 219 205 145 36 chr9 98009761 98009844 -44261600 + MIR3 SINE MIR 112 203 -5 1946 102 39 3 chr9 98009967 98010252 -44261192 + AluSx SINE Alu 6 300 -12 1905 132 7 0 chr9 98010258 98010553 -44260891 + AluSx SINE Alu 1 297 -15 965 157 6 0 chr9 98010555 98010714 -44260730 + AluSg/x SINE Alu 137 296 -16 1589 188 17 3 chr9 98010732 98011020 -44260424 + AluJb SINE Alu 1 292 -20 1545 157 30 8 chr9 98011067 98011334 -44260110 - AluJb SINE Alu -39 273 1 2147 106 3 0 chr9 98011342 98011643 -44259801 - AluSq SINE Alu -11 302 1 530 122 12 0 chr9 98012394 98012476 -44258968 + Alu SINE Alu 209 291 -19 238 274 189 7 chr9 98012726 98012879 -44258565 - L2 LINE L2 -1293 2021 1841 320 289 90 42 chr9 98013002 98013168 -44258276 - MIR3 SINE MIR -19 189 16 * 524 189 98 59 chr9 98013149 98013302 -44258142 + MIR SINE MIR 102 260 -2 1936 130 3 7 chr9 98014177 98014476 -44256968 + AluSx SINE Alu 1 298 -14 815 179 0 35 chr9 98014478 98014623 -44256821 - FLAM_C SINE Alu -2 141 2 2328 90 0 0 chr9 98015011 98015311 -44256133 - AluSx SINE Alu -12 300 1 23 78 0 0 chr9 98015499 98015550 -44255894 + AT_rich Low_complexity Low_complexity 1 51 0 2347 97 0 0 chr9 98015554 98015914 -44255530 - AluSx SINE Alu 0 360 1 1343 206 9 35 chr9 98016164 98016345 -44255099 - AluJo SINE Alu -5 307 136 2072 106 0 13 chr9 98016345 98016647 -44254797 - AluSc SINE Alu -11 298 1 1343 206 9 35 chr9 98016647 98016780 -44254664 - AluJo SINE Alu -176 136 1 2184 67 35 0 chr9 98017623 98017907 -44253537 - AluSc SINE Alu -13 296 3 1602 142 0 4 chr9 98018125 98018371 -44253073 + AluJb SINE Alu 12 256 -56 1085 95 7 0 chr9 98018371 98018518 -44252926 - AluSq/x SINE Alu -164 148 1 1887 108 36 26 chr9 98018711 98019017 -44252427 + AluSg SINE Alu 1 309 -1 2099 115 10 0 chr9 98019234 98019529 -44251915 - AluSx SINE Alu -14 298 1 2237 87 7 0 chr9 98019888 98020177 -44251267 - AluSp SINE Alu -22 291 1 1053 324 182 35 chr9 98020195 98021734 -44249710 + L2 LINE L2 1057 2821 -493 910 201 68 60 chr9 98021946 98022195 -44249249 + MIR SINE MIR 12 262 0 22 80 0 0 chr9 98022744 98022794 -44248650 + AT_rich Low_complexity Low_complexity 1 50 0 2395 84 0 0 chr9 98023183 98023494 -44247950 + AluY SINE Alu 1 311 0 577 269 148 0 chr9 98023509 98023691 -44247753 - MIR SINE MIR -10 252 44 546 261 195 5 chr9 98024213 98024428 -44247016 + MIR SINE MIR 2 257 -5 585 245 134 83 chr9 98025386 98025782 -44245662 - L1MC5 LINE L1 -30 7931 7516 2323 212 131 53 chr9 98025789 98026225 -44245219 - L1ME1 LINE L1 -9 6157 5756 2380 61 0 0 chr9 98026225 98026519 -44244925 - AluSg SINE Alu -16 294 1 2323 212 131 53 chr9 98026519 98026747 -44244697 - L1ME1 LINE L1 -410 5756 5425 1416 177 136 0 chr9 98026747 98027012 -44244432 - AluJo SINE Alu 0 302 2 2323 212 131 53 chr9 98027012 98027102 -44244342 - L1ME1 LINE L1 -741 5425 5343 346 299 133 25 chr9 98027119 98027360 -44244084 - L1MC4a LINE L1 -1135 6673 6407 21 71 0 0 chr9 98027526 98027568 -44243876 + AT_rich Low_complexity Low_complexity 1 42 0 2074 104 10 3 chr9 98027600 98027899 -44243545 - AluSq SINE Alu -12 301 1 1789 128 3 35 chr9 98027972 98028282 -44243162 + AluJo SINE Alu 1 301 0 344 242 195 7 chr9 98028350 98028499 -44242945 - L1MC4a LINE L1 -1920 5888 5712 467 284 82 19 chr9 98028573 98028781 -44242663 - L1MC4 LINE L1 -1 8041 7821 543 242 31 10 chr9 98028796 98028957 -44242487 - L1ME2 LINE L1 0 6170 6006 2153 73 0 31 chr9 98029169 98029480 -44241964 - AluSg SINE Alu 0 302 1 1508 173 3 27 chr9 98029549 98029849 -44241595 + AluJo SINE Alu 1 293 -19 1467 154 60 62 chr9 98029903 98030027 -44241417 - L1MB4 LINE L1 0 6180 6057 2231 84 0 13 chr9 98030027 98030326 -44241118 - AluSg SINE Alu -15 295 1 1467 154 60 62 chr9 98030326 98030570 -44240874 - L1MB4 LINE L1 -123 6057 5813 3995 187 60 42 chr9 98030608 98031465 -44239979 - L1MB7 LINE L1 -47 6137 5247 1029 190 0 0 chr9 98031465 98031639 -44239805 - FAM SINE Alu -1 174 1 3995 187 60 42 chr9 98031639 98032113 -44239331 - L1MB7 LINE L1 -937 5247 4783 2347 61 7 0 chr9 98033144 98033439 -44238005 - AluSp SINE Alu -16 297 1 1941 84 8 0 chr9 98034037 98034299 -44237145 + AluSq SINE Alu 39 302 -11 23 0 0 0 chr9 98035467 98035490 -44235954 + AT_rich Low_complexity Low_complexity 1 23 0 229 270 32 16 chr9 98037028 98037091 -44234353 + L2 LINE L2 3229 3292 -21 237 262 131 47 chr9 98039261 98039368 -44232076 - MIR SINE MIR -146 116 1 2253 94 0 0 chr9 98040550 98040848 -44230596 + AluSq SINE Alu 1 298 -15 1587 171 39 0 chr9 98041642 98041922 -44229522 + AluJo SINE Alu 1 291 -21 255 204 0 0 chr9 98042783 98042837 -44228607 + T-rich Low_complexity Low_complexity 4 57 0 265 188 0 42 chr9 98042837 98042933 -44228511 + C-rich Low_complexity Low_complexity 1 92 0 450 202 16 5 chr9 98042933 98043121 -44228323 - AluY SINE Alu -20 291 102 2015 166 82 30 chr9 98043266 98043694 -44227750 - L1MA7 LINE L1 -38 6253 5804 2476 65 0 0 chr9 98043705 98044012 -44227432 - AluY SINE Alu -4 307 1 22 0 0 0 chr9 98044269 98044291 -44227153 + GC_rich Low_complexity Low_complexity 1 22 0 341 217 14 0 chr9 98044313 98044382 -44227062 - MER91B DNA MER1_type -118 72 3 180 0 0 0 chr9 98045272 98045292 -44226152 + (CCA)n Simple_repeat Simple_repeat 3 22 0 667 271 82 20 chr9 98046566 98046810 -44224634 - MIR SINE MIR -2 260 2 290 247 47 35 chr9 98046820 98046905 -44224539 + L1ME LINE L1 5581 5666 -455 397 256 80 29 chr9 98047594 98047731 -44223713 - MIR SINE MIR -31 231 88 1310 245 32 19 chr9 98048523 98048902 -44222542 + MLT1B LTR MaLR 7 390 0 2050 97 3 32 chr9 98053771 98054079 -44217365 + AluSx SINE Alu 1 299 -13 1662 123 32 73 chr9 98055890 98056206 -44215238 + AluSx SINE Alu 1 303 -9 2243 102 0 0 chr9 98056285 98056589 -44214855 - AluSg SINE Alu -6 304 1 350 200 142 0 chr9 98056650 98056770 -44214674 - L1ME4a LINE L1 -30 6091 5955 232 219 14 14 chr9 98056783 98056856 -44214588 + (TA)n Simple_repeat Simple_repeat 1 73 0 2258 96 0 0 chr9 98056890 98057191 -44214253 - AluSx SINE Alu -11 301 1 2125 113 0 7 chr9 98059481 98059783 -44211661 - AluSx SINE Alu -12 300 1 1993 109 0 0 chr9 98060166 98060442 -44211002 + AluSg SINE Alu 1 276 -34 648 125 0 0 chr9 98060694 98060782 -44210662 + AluJb SINE Alu 9 96 -216 929 183 30 10 chr9 98060905 98061102 -44210342 + AluJb SINE Alu 96 296 -16 1723 132 30 20 chr9 98061193 98061488 -44209956 - AluJo SINE Alu -2 310 13 23 0 0 0 chr9 98062018 98062041 -44209403 + AT_rich Low_complexity Low_complexity 1 23 0 1898 136 13 35 chr9 98065332 98065648 -44205796 - AluSx SINE Alu 0 312 4 2115 114 13 0 chr9 98065655 98065963 -44205481 - AluSp SINE Alu -1 312 1 877 155 54 18 chr9 98065979 98066147 -44205297 + FRAM SINE Alu 1 166 -10 2440 55 0 10 chr9 98066511 98066820 -44204624 - AluY SINE Alu -5 306 1 327 25 0 0 chr9 98067984 98068024 -44203420 + (CA)n Simple_repeat Simple_repeat 2 41 0 1815 123 32 4 chr9 98068083 98068360 -44203084 - AluSx SINE Alu -25 287 3 204 189 0 0 chr9 98068604 98068641 -44202803 + L2 LINE L2 3277 3313 0 198 0 0 0 chr9 98069196 98069218 -44202226 + (CA)n Simple_repeat Simple_repeat 2 23 0 2160 78 0 3 chr9 98069287 98069594 -44201850 - AluY SINE Alu 0 307 2 207 297 239 29 chr9 98071527 98071665 -44199779 - MIR SINE MIR -48 214 48 298 222 52 163 chr9 98071813 98071966 -44199478 + L2 LINE L2 3177 3312 -1 222 171 0 0 chr9 98072971 98073012 -44198432 + L2 LINE L2 3273 3313 0 839 152 0 41 chr9 98073325 98073470 -44197974 - AluJo SINE Alu -4 308 170 770 136 0 0 chr9 98073469 98073579 -44197865 - AluJo SINE Alu -201 111 2 * 24 32 0 0 chr9 98073587 98073618 -44197826 + AT_rich Low_complexity Low_complexity 1 31 0 2239 117 0 0 chr9 98073940 98074238 -44197206 - AluSx SINE Alu -14 298 1 1054 200 93 4 chr9 98074694 98074919 -44196525 + L1M4 LINE L1 5487 5731 -447 307 317 109 6 chr9 98074935 98075118 -44196326 + L1MC/D LINE L1 5593 5794 -2014 2079 119 3 7 chr9 98075141 98075436 -44196008 + AluSg SINE Alu 1 294 -16 2315 75 0 0 chr9 98075554 98075836 -44195608 + AluSg SINE Alu 14 295 -15 349 192 0 0 chr9 98076224 98076297 -44195147 - LTR30 LTR ERV1 -98 624 552 1560 97 0 10 chr9 98078539 98078745 -44192699 + AluSg/x SINE Alu 106 309 -1 2521 53 30 3 chr9 98078745 98079048 -44192396 + AluY SINE Alu 1 311 0 1687 170 0 24 chr9 98079057 98079346 -44192098 - AluJo SINE Alu -30 282 1 2258 113 0 0 chr9 98079609 98079902 -44191542 + AluSg SINE Alu 1 293 -17 2523 80 0 0 chr9 98080229 98080540 -44190904 + AluY SINE Alu 1 311 0 2136 121 19 7 chr9 98080827 98081134 -44190310 + AluSx SINE Alu 1 311 -1 903 154 37 6 chr9 98081729 98081891 -44189553 - FRAM SINE Alu -15 161 1 344 184 324 0 chr9 98082128 98082264 -44189180 + MER5A DNA MER1_type 10 189 0 2212 95 6 35 chr9 98082438 98082753 -44188691 - AluSx SINE Alu -6 306 1 457 193 19 189 chr9 98085210 98085317 -44186127 - MER5B DNA MER1_type -1 177 122 1982 131 0 20 chr9 98085317 98085614 -44185830 - AluSx SINE Alu -21 291 1 457 193 19 189 chr9 98085614 98085718 -44185726 - MER5B DNA MER1_type -56 122 2 1104 205 94 37 chr9 98085974 98086272 -44185172 + MLT2D LTR ERVL 100 414 0 242 246 31 0 chr9 98086274 98086339 -44185105 + MLT1B-int LTR MaLR 4 70 -1301 * 2324 212 102 111 chr9 98086330 98087297 -44184147 + MLT1B-int LTR MaLR 412 1370 -1 1283 189 111 39 chr9 98087302 98087460 -44183984 + MLT1B LTR MaLR 5 150 -240 2496 60 0 3 chr9 98087460 98087758 -44183686 + AluY SINE Alu 1 297 -14 1283 189 111 39 chr9 98087758 98087959 -44183485 + MLT1B LTR MaLR 150 390 0 886 180 84 0 chr9 98088085 98088252 -44183192 - MER20 DNA MER1_type 0 219 39 657 86 0 0 chr9 98088540 98088621 -44182823 + ERVL LTR ERVL 4582 4662 -1102 2276 91 0 29 chr9 98088621 98088757 -44182687 + AluSx SINE Alu 1 139 -173 2380 65 24 3 chr9 98088757 98089049 -44182395 + AluY SINE Alu 1 298 -13 2276 91 0 29 chr9 98089049 98089221 -44182223 + AluSx SINE Alu 139 300 -12 1164 90 78 0 chr9 98089406 98089572 -44181872 - AluSc SINE Alu -2 307 129 512 84 0 0 chr9 98089617 98089688 -44181756 + Alu SINE Alu 229 299 -10 23 0 0 0 chr9 98089841 98089864 -44181580 + AT_rich Low_complexity Low_complexity 1 23 0 2123 150 24 3 chr9 98089864 98090205 -44181239 + MER7A DNA MER2_type 1 346 0 259 186 0 0 chr9 98090712 98090771 -44180673 - Alu SINE Alu 0 302 244 2372 97 0 0 chr9 98090871 98091180 -44180264 - AluY SINE Alu -2 309 1 7841 204 59 34 chr9 98091180 98091505 -44179939 - L1MB3 LINE L1 -150 6269 5954 2255 131 0 0 chr9 98091505 98091817 -44179627 + AluSx SINE Alu 1 312 0 7841 204 59 34 chr9 98091817 98092756 -44178688 - L1MB3 LINE L1 -465 5954 5040 1955 168 0 7 chr9 98092756 98093059 -44178385 - AluJb SINE Alu -11 301 1 7841 204 59 34 chr9 98093059 98093562 -44177882 - L1MB3 LINE L1 -1379 5040 4551 1501 131 102 57 chr9 98093562 98093845 -44177599 - AluSx SINE Alu -16 296 1 7841 204 59 34 chr9 98093845 98094896 -44176548 - L1MB3 LINE L1 -1868 4551 3388 22 70 0 0 chr9 98094968 98095011 -44176433 + AT_rich Low_complexity Low_complexity 1 43 0 821 173 0 54 chr9 98095045 98095230 -44176214 - L1MB3 LINE L1 -4522 1862 1688 361 289 33 0 chr9 98095230 98095351 -44176093 - L1 LINE L1 -2582 3564 3440 353 117 0 33 chr9 98095392 98095452 -44175992 - L1M4c LINE L1 -4522 1862 1805 3788 185 63 38 chr9 98095466 98096237 -44175207 - L1M4c LINE L1 -4704 1680 879 2030 121 34 7 chr9 98096237 98096534 -44174910 - AluSq SINE Alu -8 305 1 3788 185 63 38 chr9 98096534 98096708 -44174736 - L1M4c LINE L1 -5505 879 711 227 234 172 0 chr9 98096814 98096878 -44174566 - L2 LINE L2 0 3313 3239 237 274 160 19 chr9 98096886 98096992 -44174452 + L2 LINE L2 3193 3313 0 1687 198 54 6 chr9 98097642 98097976 -44173468 + ERVL LTR ERVL 4717 5066 -698 1665 102 4 4 chr9 98098225 98098450 -44172994 + AluSp SINE Alu 77 301 -12 229 247 22 0 chr9 98098484 98098573 -44172871 - L1MC4 LINE L1 -1337 6705 6615 2798 165 12 0 chr9 98098668 98099152 -44172292 + L1MB3 LINE L1 5685 6174 -9 353 157 0 29 chr9 98099492 98099562 -44171882 - LTR41 LTR ERVL 0 773 706 985 150 0 25 chr9 98099583 98099743 -44171701 + FAM SINE Alu 10 165 -20 637 227 37 18 chr9 98100277 98100440 -44171004 - LTR41 LTR ERVL -607 166 1 1777 141 3 27 chr9 98100875 98101173 -44170271 + AluJo SINE Alu 1 291 -21 739 75 0 0 chr9 98103487 98103581 -44167863 + AluSg/x SINE Alu 204 297 -12 325 263 10 10 chr9 98103979 98104078 -44167366 - MIR3 SINE MIR -10 198 100 2668 46 3 0 chr9 98104289 98104596 -44166848 - AluY SINE Alu -2 309 2 2005 128 0 3 chr9 98104899 98105188 -44166256 + AluSg SINE Alu 10 297 -13 905 173 27 0 chr9 98105263 98105413 -44166031 + FRAM SINE Alu 1 154 -12 193 105 0 53 chr9 98105416 98105473 -44165971 + (TTAA)n Simple_repeat Simple_repeat 1 54 0 4654 67 17 0 chr9 98106087 98106668 -44164776 + LTR10C LTR ERV1 1 591 0 2012 115 4 0 chr9 98107311 98107624 -44163820 - AluSx SINE Alu 0 326 13 2598 65 0 0 chr9 98107648 98107957 -44163487 - AluY SINE Alu -1 310 2 2260 111 0 7 chr9 98108590 98108897 -44162547 - AluSx SINE Alu -7 305 1 1586 51 98 0 chr9 98109155 98109369 -44162075 - L1PA8 LINE L1 0 6172 5938 2560 182 133 6 chr9 98109403 98110028 -44161416 + L1ME2 LINE L1 5324 6027 -137 261 205 77 0 chr9 98110036 98110114 -44161330 + L1ME2 LINE L1 6081 6164 0 1280 177 9 5 chr9 98110386 98110601 -44160843 - AluJo SINE Alu -20 292 77 2273 125 0 0 chr9 98110756 98111068 -44160376 + AluSx SINE Alu 1 312 0 416 240 40 8 chr9 98111103 98111228 -44160216 + MER3 DNA MER1_type 1 129 -80 260 328 57 16 chr9 98111494 98111616 -44159828 - MIR SINE MIR -47 215 89 1572 180 53 0 chr9 98112356 98112639 -44158805 - AluJo SINE Alu -14 298 1 2147 124 3 13 chr9 98112919 98113218 -44158226 + AluSx SINE Alu 1 296 -16 2348 84 0 10 chr9 98113542 98113841 -44157603 + AluY SINE Alu 1 296 -15 3839 176 43 17 chr9 98113842 98114601 -44156843 - L1MB2 LINE L1 -1 6170 5392 662 137 32 32 chr9 98114601 98114725 -44156719 - FLAM_A SINE Alu -11 131 8 3509 214 59 24 chr9 98114731 98115611 -44155833 - L1MB2 LINE L1 -746 5400 4490 2550 51 0 0 chr9 98115614 98115910 -44155534 - AluY SINE Alu -15 296 1 1460 172 57 8 chr9 98116505 98116616 -44154828 + AluJb SINE Alu 1 105 -207 1884 129 4 0 chr9 98116616 98116872 -44154572 + AluSx SINE Alu 28 284 -28 210 37 0 0 chr9 98116877 98116904 -44154540 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1460 172 57 8 chr9 98116904 98117048 -44154396 + AluJb SINE Alu 108 275 -37 2115 117 3 7 chr9 98117428 98117727 -44153717 + AluY SINE Alu 1 298 -13 183 80 0 0 chr9 98117780 98117805 -44153639 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 417 152 127 13 chr9 98117808 98117887 -44153557 - FRAM SINE Alu -31 145 58 743 196 29 0 chr9 98117907 98118045 -44153399 - AluJo SINE Alu -86 226 85 309 167 0 0 chr9 98118045 98118093 -44153351 - AluSx SINE Alu -52 248 201 664 121 10 0 chr9 98118093 98118192 -44153252 - AluSx SINE Alu -173 140 41 1546 167 0 8 chr9 98118192 98118437 -44153007 - AluJo SINE Alu -32 280 38 21 0 0 0 chr9 98118466 98118487 -44152957 + AT_rich Low_complexity Low_complexity 1 21 0 190 198 0 48 chr9 98119464 98119631 -44151813 + GA-rich Low_complexity Low_complexity 1 159 0 456 155 58 10 chr9 98119745 98119848 -44151596 + L1ME2 LINE L1 6045 6152 -12 2375 91 0 3 chr9 98119849 98120145 -44151299 - AluSg SINE Alu -15 295 1 767 91 99 0 chr9 98120146 98120267 -44151177 - AluSq/x SINE Alu -177 135 3 2404 86 0 0 chr9 98120287 98120590 -44150854 - AluSx SINE Alu -9 303 1 281 57 0 0 chr9 98120590 98120625 -44150819 - Alu SINE Alu -267 36 2 633 216 74 61 chr9 98120667 98120898 -44150546 - L1MC5 LINE L1 -479 7482 7249 1911 143 3 0 chr9 98120913 98121200 -44150244 - AluSx SINE Alu -16 296 9 1820 157 0 27 chr9 98121389 98121682 -44149762 + AluJb SINE Alu 1 285 -27 186 43 0 0 chr9 98121682 98121705 -44149739 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 659 48 0 0 chr9 98121846 98121930 -44149514 + AluS SINE Alu 1 84 -229 817 159 0 15 chr9 98122529 98122661 -44148783 + FLAM_A SINE Alu 1 130 -3 336 189 63 21 chr9 98122676 98122771 -44148673 - Charlie8 DNA MER1_type -2237 180 82 367 197 26 0 chr9 98122793 98122869 -44148575 - HsTC2 DNA Tc2 -1814 84 7 23 33 0 0 chr9 98123627 98123657 -44147787 + AT_rich Low_complexity Low_complexity 1 30 0 1890 155 13 7 chr9 98123744 98124054 -44147390 + AluJb SINE Alu 1 312 0 905 255 144 39 chr9 98124080 98124461 -44146983 + MLT1K LTR MaLR 96 516 -72 981 244 160 47 chr9 98124092 98124461 -44146983 + MLT1K LTR MaLR 3 428 -48 2102 116 14 3 chr9 98124461 98124755 -44146689 - AluSx SINE Alu -14 298 2 981 244 160 47 chr9 98124755 98124811 -44146633 + MLT1K LTR MaLR 428 476 0 1555 200 7 18 chr9 98125174 98125459 -44145985 + AluJo SINE Alu 1 282 -30 21 57 0 0 chr9 98125463 98125498 -44145946 + AT_rich Low_complexity Low_complexity 1 35 0 1338 135 154 19 chr9 98125504 98125771 -44145673 + L1MA9 LINE L1 6005 6307 -5 1085 136 0 0 chr9 98127087 98127234 -44144210 + AluJo SINE Alu 1 147 -165 21 36 0 0 chr9 98127237 98127265 -44144179 + AT_rich Low_complexity Low_complexity 1 28 0 204 184 0 0 chr9 98129050 98129099 -44142345 + (TG)n Simple_repeat Simple_repeat 2 50 0 1037 203 38 42 chr9 98129229 98129465 -44141979 - AluJo SINE Alu -11 301 67 2222 111 0 0 chr9 98129466 98129764 -44141680 + AluSg1 SINE Alu 2 299 -10 2230 80 3 20 chr9 98129791 98130091 -44141353 + AluY SINE Alu 1 295 -16 359 250 0 38 chr9 98130091 98130171 -44141273 - AluJo SINE Alu -225 77 1 235 206 137 0 chr9 98130599 98130672 -44140772 + L1ME3 LINE L1 6048 6130 -32 2432 72 0 10 chr9 98130674 98130981 -44140463 + AluSc SINE Alu 1 304 -5 2071 104 83 28 chr9 98132747 98133074 -44138370 + L1MA2 LINE L1 5959 6303 -1 323 211 104 119 chr9 98133434 98133685 -44137759 + L1MC/D LINE L1 5324 5570 -2238 2244 116 0 3 chr9 98133739 98134042 -44137402 + AluSq SINE Alu 4 305 -8 1650 112 151 0 chr9 98134731 98134990 -44136454 - AluSx SINE Alu -14 298 1 24 32 0 0 chr9 98135197 98135228 -44136216 + AT_rich Low_complexity Low_complexity 1 31 0 300 182 22 86 chr9 98135894 98135994 -44135450 - MIR SINE MIR -82 126 31 2399 75 0 0 chr9 98136282 98136574 -44134870 - AluSc SINE Alu -15 294 3 4396 157 80 60 chr9 98136734 98137644 -44133800 + MER21A LTR ERV1 1 928 -3 233 139 83 28 chr9 98137658 98137730 -44133714 + L1M4 LINE L1 5316 5391 -755 815 283 79 42 chr9 98137742 98138129 -44133315 + L1M4 LINE L1 3829 4243 -1903 2021 123 7 7 chr9 98138129 98138429 -44133015 + AluSx SINE Alu 1 300 -12 815 283 79 42 chr9 98138429 98138571 -44132873 + L1M4 LINE L1 4243 4378 -1768 404 255 102 19 chr9 98138594 98138751 -44132693 + L1M4 LINE L1 4499 4668 -1478 1279 155 0 24 chr9 98138877 98139090 -44132354 - AluJo SINE Alu -104 208 1 750 195 81 99 chr9 98139112 98139333 -44132111 + MER20 DNA MER1_type 1 217 -2 450 262 8 8 chr9 98139634 98139756 -44131688 + LTR67 LTR ERVL 429 550 -7 306 321 66 51 chr9 98140146 98140342 -44131102 - HAL1 LINE L1 -854 1653 1455 2276 115 3 6 chr9 98141015 98141328 -44130116 - AluSq SINE Alu -1 312 1 275 216 21 20 chr9 98141622 98141742 -44129702 - FRAM/FAM SINE Alu -92 74 3 1895 119 0 8 chr9 98141935 98142196 -44129248 - AluSx SINE Alu -15 297 39 2390 56 0 30 chr9 98142482 98142784 -44128660 - AluY SINE Alu -18 293 1 22 35 0 0 chr9 98143267 98143296 -44128148 + AT_rich Low_complexity Low_complexity 1 29 0 606 149 18 61 chr9 98143430 98143544 -44127900 - L1MC1 LINE L1 0 6333 6225 449 266 17 84 chr9 98144121 98144358 -44127086 + L1ME3A LINE L1 5928 6148 -22 2235 104 10 13 chr9 98144372 98144680 -44126764 + AluSp SINE Alu 5 311 -2 24 32 0 0 chr9 98145012 98145043 -44126401 + AT_rich Low_complexity Low_complexity 1 31 0 276 75 0 0 chr9 98147437 98147477 -44123967 + Alu SINE Alu 257 296 -4 937 219 141 35 chr9 98147906 98148253 -44123191 + L1ME3A LINE L1 5557 5940 -230 907 179 50 10 chr9 98148311 98148512 -44122932 + L1MD3 LINE L1 6909 7117 -878 356 172 32 75 chr9 98148513 98148606 -44122838 + MLT1F1 LTR MaLR 37 125 -442 2112 164 73 28 chr9 98148606 98149029 -44122415 + L1MD3 LINE L1 7404 7851 -144 2376 84 3 0 chr9 98149029 98149328 -44122116 - AluSx SINE Alu -12 300 1 2112 164 73 28 chr9 98149328 98149367 -44122077 + L1MD3 LINE L1 7851 7887 -108 368 117 83 0 chr9 98149368 98149428 -44122016 + MLT1A2 LTR MaLR 1 65 -309 1905 258 111 32 chr9 98149553 98149888 -44121556 + L1MEc LINE L1 337 644 -5963 1983 146 7 3 chr9 98149888 98150189 -44121255 + AluSx SINE Alu 5 306 -6 1905 258 111 32 chr9 98150189 98150321 -44121123 + L1MEc LINE L1 644 764 -5843 2197 101 3 3 chr9 98150321 98150617 -44120827 + AluSc SINE Alu 1 296 -13 1905 258 111 32 chr9 98150617 98150920 -44120524 + L1MEc LINE L1 764 1169 -5438 1700 226 44 7 chr9 98150949 98151360 -44120084 + L1MB7 LINE L1 5673 6098 -86 22 70 0 0 chr9 98151364 98151407 -44120037 + AT_rich Low_complexity Low_complexity 1 43 0 288 194 104 0 chr9 98151448 98151515 -44119929 + L1MB8 LINE L1 6105 6178 0 2152 129 0 10 chr9 98151532 98151841 -44119603 + AluSg SINE Alu 1 306 -4 1990 76 88 0 chr9 98152662 98152977 -44118467 - AluSp SINE Alu 0 338 1 2076 114 0 4 chr9 98153008 98153289 -44118155 - AluSx SINE Alu -32 280 1 1267 264 90 9 chr9 98153529 98153983 -44117461 + LTR16C LTR ERVL 1 491 0 954 153 6 6 chr9 98154034 98154191 -44117253 + AluSq SINE Alu 137 293 -20 2248 114 3 0 chr9 98154373 98154681 -44116763 + AluSx SINE Alu 3 311 -1 795 171 8 0 chr9 98154721 98154844 -44116600 + FLAM_C SINE Alu 1 124 -19 459 0 0 0 chr9 98154847 98154898 -44116546 + (TG)n Simple_repeat Simple_repeat 2 52 0 621 208 0 16 chr9 98154898 98155023 -44116421 - FLAM_C SINE Alu -20 123 1 498 231 37 0 chr9 98155194 98155302 -44116142 - AluSq/x SINE Alu -199 113 2 719 139 33 116 chr9 98155303 98155518 -44115926 + L1MEc LINE L1 1932 2128 -4298 1556 91 0 5 chr9 98155534 98155732 -44115712 + AluSq SINE Alu 98 294 -19 1870 269 49 15 chr9 98155732 98156342 -44115102 + L1MEc LINE L1 2555 3185 -3241 1955 143 10 0 chr9 98156353 98156646 -44114798 + AluSx SINE Alu 5 300 -12 1892 142 10 3 chr9 98156646 98156941 -44114503 + Tigger2 DNA MER2_type 2422 2718 0 270 262 135 24 chr9 98157186 98157312 -44114132 - MIR SINE MIR 0 262 123 342 328 86 55 chr9 98157326 98157582 -44113862 + L1MEd LINE L1 110 373 -5746 2047 125 33 3 chr9 98157977 98158280 -44113164 - AluSx SINE Alu 0 312 1 819 177 25 51 chr9 98158597 98158755 -44112689 + AluJb SINE Alu 121 274 -38 297 75 0 0 chr9 98158759 98158799 -44112645 + (TG)n Simple_repeat Simple_repeat 2 41 0 2175 108 0 3 chr9 98158810 98159098 -44112346 - AluSx SINE Alu -24 288 2 238 132 38 0 chr9 98159098 98159151 -44112293 + (TA)n Simple_repeat Simple_repeat 1 55 0 600 213 24 10 chr9 98159301 98159436 -44112008 - MER77 LTR ERV1 -9 596 443 320 150 20 18 chr9 98159466 98159719 -44111725 + AluJo SINE Alu 1 302 0 882 40 0 0 chr9 98159780 98159926 -44111518 - AluY SINE Alu 0 328 183 21 71 0 0 chr9 98160726 98160768 -44110676 + AT_rich Low_complexity Low_complexity 1 42 0 351 44 0 0 chr9 98160904 98160949 -44110495 + (TG)n Simple_repeat Simple_repeat 2 46 0 390 254 89 52 chr9 98161331 98161359 -44110085 - MLT1I LTR MaLR -3 406 381 2307 111 85 18 chr9 98161359 98161700 -44109744 + THE1B LTR MaLR 1 364 0 390 254 89 52 chr9 98161700 98161884 -44109560 - MLT1I LTR MaLR -28 381 186 340 26 0 0 chr9 98161963 98162002 -44109442 - MLT1I LTR MaLR -370 39 1 2106 89 0 0 chr9 98162018 98162289 -44109155 - AluY SINE Alu -2 309 39 2085 90 27 13 chr9 98162289 98162589 -44108855 - AluSx SINE Alu -8 304 1 2177 107 0 7 chr9 98162599 98162890 -44108554 - AluSc SINE Alu -20 289 1 2297 106 0 0 chr9 98163304 98163597 -44107847 + AluSx SINE Alu 1 293 -19 26 64 0 0 chr9 98163820 98163867 -44107577 + AT_rich Low_complexity Low_complexity 1 47 0 859 165 0 0 chr9 98163867 98163994 -44107450 - FLAM_C SINE Alu -6 127 1 903 247 16 31 chr9 98164023 98164077 -44107367 - L1MD3 LINE L1 -12 7983 7930 2226 111 20 0 chr9 98164077 98164375 -44107069 + AluSc SINE Alu 1 304 -5 903 247 16 31 chr9 98164375 98164575 -44106869 - L1MD3 LINE L1 -65 7930 7733 538 218 56 62 chr9 98164651 98164704 -44106740 - MER104 DNA MER2_type -1719 179 127 2348 102 0 3 chr9 98164704 98165009 -44106435 - AluSq SINE Alu -9 304 1 538 218 56 62 chr9 98165009 98165134 -44106310 - MER104 DNA MER2_type -1771 127 2 551 272 64 19 chr9 98165134 98165399 -44106045 - L1MC4a LINE L1 -1941 5867 5591 1036 122 111 0 chr9 98165506 98165678 -44105766 + AluSg/x SINE Alu 122 312 0 1673 170 0 24 chr9 98165687 98165976 -44105468 - AluJo SINE Alu -30 282 1 2233 113 0 0 chr9 98166239 98166532 -44104912 + AluSg SINE Alu 1 293 -17 2265 115 0 0 chr9 98166861 98167165 -44104279 + AluSq SINE Alu 3 306 -7 1182 95 12 133 chr9 98167166 98167554 -44103890 - L1MCa LINE L1 -4502 1924 1477 1847 159 10 16 chr9 98167556 98167864 -44103580 - AluSx SINE Alu -6 306 1 1103 89 0 0 chr9 98167864 98167999 -44103445 - AluSq/x SINE Alu -177 135 1 3056 144 108 11 chr9 98168003 98168634 -44102810 - L1MCa LINE L1 -4957 1469 778 434 119 376 9 chr9 98168640 98168677 -44102767 - Tigger2 DNA MER2_type -286 2432 2410 183 42 0 0 chr9 98168677 98168701 -44102743 + (GGA)n Simple_repeat Simple_repeat 3 26 0 434 119 376 9 chr9 98168701 98168772 -44102672 - Tigger2 DNA MER2_type -308 2410 2284 1986 62 0 33 chr9 98168772 98169046 -44102398 - AluY SINE Alu -46 265 1 381 125 62 31 chr9 98169065 98169129 -44102315 - Tigger2 DNA MER2_type -2652 66 1 2397 84 3 3 chr9 98169454 98169753 -44101691 + AluSp SINE Alu 1 299 -14 2187 100 40 0 chr9 98169890 98170190 -44101254 + AluSx SINE Alu 1 312 0 2449 69 0 16 chr9 98170190 98170495 -44100949 + AluY SINE Alu 1 301 -10 566 261 96 19 chr9 98170793 98171115 -44100329 - L1ME4a LINE L1 -3 6118 5772 26 0 0 0 chr9 98171795 98171821 -44099623 + AT_rich Low_complexity Low_complexity 1 26 0 2425 80 3 0 chr9 98172184 98172486 -44098958 - AluSc SINE Alu -6 303 1 1936 163 48 12 chr9 98172507 98172839 -44098605 - MER2 DNA MER2_type 0 344 1 1926 156 0 3 chr9 98172882 98173189 -44098255 - AluY SINE Alu -5 306 1 1752 76 0 44 chr9 98173507 98173758 -44097686 + AluY SINE Alu 72 311 0 2073 116 24 3 chr9 98173865 98174158 -44097286 + AluSq SINE Alu 1 299 -14 2250 114 0 0 chr9 98174494 98174792 -44096652 - AluSc SINE Alu -11 298 1 324 75 0 0 chr9 98174885 98174925 -44096519 - Alu SINE Alu -36 266 227 274 204 61 0 chr9 98175210 98175259 -44096185 + MER58B DNA MER1_type 1 52 -289 766 204 0 0 chr9 98175259 98175391 -44096053 - FLAM_C SINE Alu -10 133 2 554 252 46 0 chr9 98175401 98175552 -44095892 + MER58B DNA MER1_type 169 326 -15 421 250 11 97 chr9 98175612 98175773 -44095671 + L1M4 LINE L1 2232 2405 -3741 2110 84 4 0 chr9 98175773 98176046 -44095398 + AluSg SINE Alu 1 274 -36 207 0 0 0 chr9 98176056 98176079 -44095365 + (CAA)n Simple_repeat Simple_repeat 2 24 0 421 250 11 97 chr9 98176079 98176155 -44095289 + L1M4 LINE L1 2414 2459 -3687 2574 223 46 20 chr9 98176178 98176453 -44094991 - MER82 DNA MER2_type -4 649 382 2286 88 0 0 chr9 98176453 98176750 -44094694 - AluSc SINE Alu -12 297 1 2574 223 46 20 chr9 98176750 98177066 -44094378 - MER82 DNA MER2_type -271 382 43 1608 157 10 17 chr9 98177209 98177509 -44093935 + L1MA5 LINE L1 6003 6300 0 332 335 108 22 chr9 98177520 98177705 -44093739 + L1ME LINE L1 5618 5818 -303 1740 224 98 7 chr9 98178139 98178152 -44093292 + L1M4 LINE L1 2859 2869 -3277 1681 88 4 0 chr9 98178152 98178380 -44093064 - AluSg/x SINE Alu -8 302 74 1740 224 98 7 chr9 98178380 98178960 -44092484 + L1M4 LINE L1 2869 3506 -2640 843 167 80 0 chr9 98179250 98179412 -44092032 + MER58B DNA MER1_type 167 341 0 265 225 69 94 chr9 98179687 98179847 -44091597 + L1MCb LINE L1 137 292 -5753 5517 229 61 26 chr9 98179879 98179908 -44091536 + L1M4 LINE L1 2884 2911 -3235 2144 105 0 0 chr9 98179908 98180221 -44091223 + AluSx SINE Alu 1 313 0 5517 229 61 26 chr9 98180221 98182014 -44089430 + L1M4 LINE L1 2911 4995 -1151 1952 117 24 3 chr9 98182428 98182719 -44088725 - AluSq SINE Alu -14 299 3 2225 92 0 52 chr9 98182824 98183152 -44088292 - AluY SINE Alu 0 311 1 2468 59 0 0 chr9 98183463 98183770 -44087674 + AluY SINE Alu 5 311 0 733 213 87 43 chr9 98184070 98184277 -44087167 - MER20 DNA MER1_type -3 216 1 816 253 155 52 chr9 98184438 98184741 -44086703 + MLT1J2 LTR MaLR 1 354 -96 2085 116 3 0 chr9 98184741 98185033 -44086411 - AluSp SINE Alu -20 293 1 816 253 155 52 chr9 98185033 98185117 -44086327 + MLT1J2 LTR MaLR 354 428 -22 1740 154 0 16 chr9 98185466 98185771 -44085673 - AluJo SINE Alu -12 300 1 1633 154 11 7 chr9 98185861 98186146 -44085298 - AluJb SINE Alu -26 286 1 698 296 85 63 chr9 98186471 98187023 -44084421 + L2 LINE L2 2705 3263 -9 1881 120 42 3 chr9 98187719 98188003 -44083441 + AluSg SINE Alu 1 295 -15 4364 155 53 17 chr9 98188631 98188953 -44082491 + L1MA7 LINE L1 5004 5313 -978 2067 123 13 0 chr9 98188953 98189253 -44082191 + AluSx SINE Alu 1 304 -8 4364 155 53 17 chr9 98189253 98189656 -44081788 + L1MA7 LINE L1 5313 5700 -591 2494 39 3 3 chr9 98189656 98189962 -44081482 + AluY SINE Alu 1 306 -5 4364 155 53 17 chr9 98189962 98190441 -44081003 + L1MA7 LINE L1 5700 6291 0 2375 57 0 0 chr9 98190550 98190849 -44080595 - AluY SINE Alu -12 299 1 27 49 0 0 chr9 98191582 98191623 -44079821 + GC_rich Low_complexity Low_complexity 1 41 0 264 212 15 0 chr9 98192026 98192096 -44079348 + (CGGGG)n Simple_repeat Simple_repeat 1 71 0 610 142 0 82 chr9 98192362 98192496 -44078948 + FLAM_C SINE Alu 21 143 0 1717 135 7 27 chr9 98193040 98193337 -44078107 - AluJo SINE Alu -21 291 1 637 227 37 18 chr9 98193772 98193935 -44077509 + LTR41 LTR ERVL 1 166 -607 921 157 0 24 chr9 98194463 98194629 -44076815 - FAM SINE Alu -14 171 10 350 170 4 25 chr9 98194641 98194720 -44076724 + LTR41 LTR ERVL 443 773 0 2774 165 12 0 chr9 98195060 98195544 -44075900 - L1MB3 LINE L1 -9 6174 5685 309 290 47 19 chr9 98195612 98195719 -44075725 - L1MC4 LINE L1 -1314 6728 6619 * 363 258 21 0 chr9 98195639 98195732 -44075712 + L1MC4 LINE L1 6615 6709 -1333 1914 170 89 10 chr9 98195750 98195762 -44075682 - MLT2C2 LTR ERVL -37 427 417 2158 110 3 0 chr9 98195762 98196062 -44075382 - AluSp SINE Alu -12 301 1 1914 170 89 10 chr9 98196062 98196443 -44075001 - MLT2C2 LTR ERVL -47 417 3 9004 180 45 47 chr9 98196443 98196575 -44074869 - ERVL-C2 LTR ERVL -8 5756 5625 2053 121 3 0 chr9 98196575 98196873 -44074571 + AluSx SINE Alu 1 299 -13 9004 180 45 47 chr9 98196873 98197872 -44073572 - ERVL-C2 LTR ERVL -139 5625 4627 2266 78 0 10 chr9 98197872 98198031 -44073413 - AluSp SINE Alu -20 293 137 2249 65 24 3 chr9 98198031 98198323 -44073121 - AluY SINE Alu -13 298 1 2266 78 0 10 chr9 98198323 98198459 -44072985 - AluSp SINE Alu -176 137 1 9004 180 45 47 chr9 98198459 98199169 -44072275 - ERVL-C2 LTR ERVL -1137 4627 3917 254 254 0 0 chr9 98199180 98199239 -44072205 - ERVL LTR ERVL -5231 533 475 698 115 9 9 chr9 98199251 98199364 -44072080 - MLT2C2 LTR ERVL -351 113 1 307 258 111 87 chr9 98199364 98199662 -44071782 + L1MC4a LINE L1 5728 6032 -89 210 229 0 0 chr9 98199739 98199787 -44071657 + GA-rich Low_complexity Low_complexity 1 48 0 2340 87 3 0 chr9 98199822 98200134 -44071310 + AluSp SINE Alu 1 313 0 2005 71 3 45 chr9 98200532 98200843 -44070601 - AluY SINE Alu -13 298 1 2070 117 10 10 chr9 98201313 98201622 -44069822 - AluSx SINE Alu -1 311 3 1291 175 15 140 chr9 98201624 98202030 -44069414 - L1PA16 LINE L1 -6 6160 5806 1683 187 3 7 chr9 98202030 98202335 -44069109 - AluJo SINE Alu -5 307 4 2353 51 7 3 chr9 98203148 98203443 -44068001 + AluY SINE Alu 1 296 -15 2158 82 7 0 chr9 98203731 98204042 -44067402 - AluSq SINE Alu 0 313 1 2149 119 0 0 chr9 98205308 98205603 -44065841 - AluSx SINE Alu -17 295 1 1984 176 71 58 chr9 98205900 98206222 -44065222 - MLT1D LTR MaLR -1 504 188 2363 65 3 0 chr9 98206222 98206515 -44064929 + AluY SINE Alu 1 294 -17 1984 176 71 58 chr9 98206515 98206596 -44064848 - MLT1D LTR MaLR -317 188 92 3701 101 4 8 chr9 98206596 98207109 -44064335 + MER9 LTR ERVK 1 511 0 1984 176 71 58 chr9 98207109 98207171 -44064273 - MLT1D LTR MaLR -413 92 32 1513 173 16 29 chr9 98207261 98207574 -44063870 - AluJb SINE Alu -2 310 2 2126 102 0 3 chr9 98207583 98207878 -44063566 - AluSc SINE Alu -15 294 1 275 105 0 0 chr9 98207878 98207916 -44063528 + L1MC/D LINE L1 5711 5748 -611 2094 113 0 3 chr9 98207917 98208219 -44063225 - AluSg SINE Alu -9 301 1 2721 159 34 28 chr9 98208219 98208258 -44063186 + L1MD1 LINE L1 5711 5748 -494 2081 115 3 3 chr9 98208258 98208554 -44062890 - AluSc SINE Alu -13 296 1 2721 159 34 28 chr9 98208554 98209043 -44062401 + L1MD1 LINE L1 5748 6242 0 371 218 118 0 chr9 98209682 98209792 -44061652 + L1MD3 LINE L1 7872 7994 -1 469 69 86 190 chr9 98210060 98210149 -44061295 - LTR12 LTR ERV1 -132 582 506 2335 70 0 3 chr9 98210149 98210447 -44060997 - AluY SINE Alu -14 297 1 469 69 86 190 chr9 98210447 98210473 -44060971 - LTR12 LTR ERV1 -208 506 479 252 254 60 0 chr9 98210481 98210548 -44060896 - LTR30 LTR ERV1 -113 609 539 1724 87 0 138 chr9 98210563 98210874 -44060570 - LTR12 LTR ERV1 -440 274 7 2143 121 0 3 chr9 98211307 98211620 -44059824 + AluSq SINE Alu 1 312 -1 675 254 139 10 chr9 98211889 98212090 -44059354 - MIR SINE MIR 0 262 36 1412 202 84 33 chr9 98212343 98212585 -44058859 + L1M4 LINE L1 4191 4466 -1680 1673 147 13 51 chr9 98212585 98212730 -44058714 + AluJo SINE Alu 1 150 -162 1967 142 3 6 chr9 98212730 98213041 -44058403 + AluSx SINE Alu 3 312 0 1673 147 13 51 chr9 98213041 98213209 -44058235 + AluJo SINE Alu 150 302 -10 1412 202 84 33 chr9 98213209 98213392 -44058052 + L1M4 LINE L1 4466 4638 -1508 1025 117 0 7 chr9 98213392 98213537 -44057907 + AluSg SINE Alu 1 144 -166 7488 34 1 1 chr9 98213537 98214975 -44056469 + L1PA5 LINE L1 4696 6140 -14 2368 182 37 9 chr9 98215233 98215666 -44055778 + LTR39 LTR ERV1 339 783 0 3174 167 49 57 chr9 98216348 98217048 -44054396 + LTR8A LTR ERV1 34 727 0 26 74 0 0 chr9 98217348 98217402 -44054042 + AT_rich Low_complexity Low_complexity 1 54 0 426 124 48 59 chr9 98217402 98217504 -44053940 - L1MA9 LINE L1 -22 6290 6043 2083 82 48 0 chr9 98217535 98217827 -44053617 - AluY SINE Alu -5 306 1 1423 173 58 14 chr9 98218093 98218371 -44053073 - MER65C LTR ERV1 0 461 172 1551 165 15 4 chr9 98218408 98218721 -44052723 + AluJb SINE Alu 12 327 0 2077 158 71 47 chr9 98218753 98219203 -44052241 - LOR1b LTR ERV1 0 461 1 1909 176 152 39 chr9 98219204 98219244 -44052200 - LTR64 LTR ERVK -8 550 516 1771 130 11 21 chr9 98219244 98219529 -44051915 + AluSg SINE Alu 26 307 -3 1909 176 152 39 chr9 98219529 98219982 -44051462 - LTR64 LTR ERVK -42 516 1 789 163 94 25 chr9 98219982 98220142 -44051302 - MER65C LTR ERV1 -290 171 1 2142 117 3 0 chr9 98220312 98220620 -44050824 + AluSg SINE Alu 1 309 -1 1155 181 95 18 chr9 98220672 98221065 -44050379 - MER31B LTR ERV1 0 466 1 315 0 0 0 chr9 98221093 98221128 -44050316 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 9079 57 10 100 chr9 98221131 98222625 -44048819 - SVA Other Other -17 1369 11 1089 61 0 0 chr9 98222740 98222872 -44048572 + AluY SINE Alu 1 132 -179 405 83 33 0 chr9 98222872 98222932 -44048512 + Alu SINE Alu 235 296 -6 2162 101 3 3 chr9 98222973 98223271 -44048173 + AluSc SINE Alu 2 299 -10 1159 159 11 0 chr9 98223377 98223559 -44047885 - Tigger2 DNA MER2_type -2182 536 353 2043 111 3 10 chr9 98223559 98223865 -44047579 - AluSc SINE Alu -5 304 1 1329 178 45 61 chr9 98223868 98224227 -44047217 - MER65B LTR ERV1 -178 353 1 313 281 226 14 chr9 98224496 98224717 -44046727 - L2 LINE L2 -2 3311 3044 1865 92 61 58 chr9 98224717 98225010 -44046434 - AluSg SINE Alu -16 294 1 2508 54 0 3 chr9 98225150 98225444 -44046000 - AluY SINE Alu -17 294 2 216 0 0 0 chr9 98225452 98225476 -44045968 + (T)n Simple_repeat Simple_repeat 1 24 0 216 243 28 75 chr9 98225677 98225784 -44045660 - MER5A DNA MER1_type -84 105 4 2548 49 13 0 chr9 98225978 98226284 -44045160 - AluY SINE Alu -1 310 1 190 263 171 40 chr9 98226416 98226492 -44044952 + L2 LINE L2 3153 3238 -34 1732 141 28 0 chr9 98226874 98227165 -44044279 - AluSq SINE Alu -8 305 7 206 213 0 0 chr9 98227469 98227516 -44043928 + (CCCCG)n Simple_repeat Simple_repeat 2 48 0 2331 22 0 0 chr9 98227985 98228253 -44043191 - L1PA4 LINE L1 -3 6152 5885 2085 62 0 4 chr9 98228279 98228535 -44042909 + AluSg SINE Alu 39 293 -17 299 253 36 12 chr9 98228762 98228845 -44042599 - LTR16C LTR ERVL -219 272 188 1710 181 16 102 chr9 98229032 98229485 -44041959 - MLT2D LTR ERVL 0 414 1 1683 140 114 7 chr9 98229563 98229834 -44041610 + AluJb SINE Alu 1 300 -12 23 0 0 0 chr9 98230020 98230043 -44041401 + AT_rich Low_complexity Low_complexity 1 23 0 272 227 148 47 chr9 98230335 98230463 -44040981 + MER5A DNA MER1_type 31 171 -18 * 364 228 171 8 chr9 98230367 98230490 -44040954 - MER5A DNA MER1_type -46 143 1 211 239 0 0 chr9 98230744 98230790 -44040654 - L2 LINE L2 0 3272 3227 273 323 26 58 chr9 98230826 98231015 -44040429 + L2 LINE L2 1542 1724 -1590 398 243 18 18 chr9 98231062 98231173 -44040271 - MLT1K LTR MaLR -7 581 471 521 247 207 33 chr9 98231551 98231822 -44039622 + MLT1H LTR MaLR 232 549 0 2576 71 0 3 chr9 98232887 98233196 -44038248 + AluY SINE Alu 1 308 -3 2269 123 0 0 chr9 98233225 98233534 -44037910 + AluSx SINE Alu 1 309 -3 3860 99 0 4 chr9 98233547 98234060 -44037384 - MER9 LTR ERVK 0 511 1 2134 141 3 0 chr9 98234195 98234500 -44036944 + AluSx SINE Alu 1 306 -6 5291 222 40 28 chr9 98234752 98235223 -44036221 + L1M4 LINE L1 3719 4183 -1963 2153 115 7 0 chr9 98235223 98235527 -44035917 + AluSx SINE Alu 1 306 -6 5291 222 40 28 chr9 98235527 98236332 -44035112 + L1M4 LINE L1 4183 4977 -1169 1256 112 122 0 chr9 98236332 98236537 -44034907 - MER30 DNA MER1_type 0 230 1 5291 222 40 28 chr9 98236537 98236567 -44034877 + L1M4 LINE L1 4977 5005 -1141 180 0 0 0 chr9 98236567 98236587 -44034857 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 2007 94 53 0 chr9 98236587 98236853 -44034591 - AluSx SINE Alu -32 280 1 5291 222 40 28 chr9 98236853 98237003 -44034441 + L1M4 LINE L1 5004 5196 -950 7258 134 56 131 chr9 98237027 98238859 -44032585 - pTR5 LTR ERV1 0 2438 743 3636 203 30 25 chr9 98238859 98239656 -44031788 + L1MCa LINE L1 45 845 -5581 506 127 13 0 chr9 98239693 98239772 -44031672 - L1MCa LINE L1 -6248 178 99 * 3669 214 72 52 chr9 98239769 98239945 -44031499 + L1MCa LINE L1 867 1038 -5388 1676 175 31 0 chr9 98239945 98240236 -44031208 + AluJb SINE Alu 1 300 -12 3669 214 72 52 chr9 98240236 98240654 -44030790 + L1MCa LINE L1 1038 1446 -4980 2194 112 23 0 chr9 98240654 98240959 -44030485 + AluSx SINE Alu 1 312 0 3669 214 72 52 chr9 98240959 98242061 -44029383 + L1MCa LINE L1 1446 2762 -3664 645 186 8 8 chr9 98242073 98242202 -44029242 + FRAM SINE Alu 31 159 -17 929 250 41 55 chr9 98242209 98242519 -44028925 + L1MCa LINE L1 2747 3053 -3373 2363 92 0 16 chr9 98242519 98242834 -44028610 + AluSq SINE Alu 1 310 -3 929 250 41 55 chr9 98242834 98242887 -44028557 + L1MCa LINE L1 3053 3105 -3321 32 0 0 0 chr9 98243313 98243345 -44028099 + AT_rich Low_complexity Low_complexity 1 32 0 4833 137 44 4 chr9 98243356 98244195 -44027249 - L1MA4 LINE L1 0 6300 5428 6318 33 0 18 chr9 98244212 98244947 -44026497 - SVA Other Other 0 1386 665 332 321 18 0 chr9 98245842 98245951 -44025493 - MIR SINE MIR -68 140 30 315 216 0 0 chr9 98246345 98246396 -44025048 + Tigger2 DNA MER2_type 2667 2717 -1 22 0 0 0 chr9 98246396 98246418 -44025026 + AT_rich Low_complexity Low_complexity 1 22 0 2097 119 13 3 chr9 98246430 98246733 -44024711 - AluSq SINE Alu -7 306 1 3249 214 41 41 chr9 98247818 98248022 -44023422 - L1MB7 LINE L1 -7 6177 5975 1712 185 81 27 chr9 98248022 98248428 -44023016 - MSTC LTR MaLR 0 428 1 3249 214 41 41 chr9 98248428 98248935 -44022509 - L1MB7 LINE L1 -209 5975 5470 2627 52 0 0 chr9 98248935 98249245 -44022199 - AluY SINE Alu -1 310 1 3249 214 41 41 chr9 98249245 98249911 -44021533 - L1MB7 LINE L1 -709 5475 4630 2232 93 24 3 chr9 98249911 98250202 -44021242 - AluSx SINE Alu -15 297 1 825 148 25 0 chr9 98250211 98250333 -44021111 - FLAM_C SINE Alu -18 125 1 4261 169 64 14 chr9 98250333 98250850 -44020594 - L1MB3 LINE L1 -31 6152 5568 2193 115 0 3 chr9 98250850 98251146 -44020298 - AluSx SINE Alu -15 297 3 4261 169 64 14 chr9 98251146 98251556 -44019888 - L1MB3 LINE L1 -615 5568 5180 841 107 0 67 chr9 98251570 98251748 -44019696 + (TCCCC)n Simple_repeat Simple_repeat 5 170 0 939 181 0 0 chr9 98251752 98251907 -44019537 - FAM SINE Alu -30 155 1 884 188 16 5 chr9 98251907 98252099 -44019345 - L1MB3 LINE L1 -979 5167 4974 261 259 43 9 chr9 98252098 98252214 -44019230 - L1MB3 LINE L1 -2694 3452 3333 * 3243 167 36 18 chr9 98252214 98252831 -44018613 - MER39 LTR ERV1 -4 703 76 257 35 0 0 chr9 98252829 98252858 -44018586 - LTR48B LTR ERV1 -615 29 1 * 367 142 14 3 chr9 98252877 98252941 -44018503 - Alu SINE Alu -252 51 2 1625 176 24 17 chr9 98254108 98254398 -44017046 - AluJb SINE Alu -20 292 1 2183 120 0 3 chr9 98254744 98255035 -44016409 + AluSx SINE Alu 1 290 -22 2401 140 77 0 chr9 98255585 98255986 -44015458 - MSTB1 LTR MaLR 0 432 1 299 257 0 0 chr9 98256074 98256144 -44015300 - L1MC4 LINE L1 -525 7517 7448 1184 77 19 0 chr9 98256164 98256320 -44015124 - AluSg/x SINE Alu 0 312 154 579 155 0 19 chr9 98256320 98256423 -44015021 + AluJo/FRAM SINE Alu 200 300 -12 721 300 66 16 chr9 98256423 98256786 -44014658 - L1MC4 LINE L1 -748 7294 6914 1998 103 62 98 chr9 98257969 98258147 -44013297 + THE1C LTR MaLR 3 186 -189 2216 118 0 0 chr9 98258147 98258444 -44013000 - AluSx SINE Alu -15 297 1 1998 103 62 98 chr9 98258444 98258652 -44012792 + THE1C LTR MaLR 186 375 0 4752 210 103 18 chr9 98259180 98260096 -44011348 + Cheshire DNA MER1_type 742 1790 -630 608 202 0 16 chr9 98260096 98260220 -44011224 + FLAM_A SINE Alu 2 123 -10 4752 210 103 18 chr9 98260220 98260529 -44010915 + Cheshire DNA MER1_type 1790 2071 -349 1428 146 46 42 chr9 98260529 98260789 -44010655 - AluJb SINE Alu -17 295 35 1107 195 110 13 chr9 98260790 98261108 -44010336 + Cheshire DNA MER1_type 2066 2414 -6 1397 210 134 31 chr9 98261285 98261704 -44009740 + MLT1C LTR MaLR 6 467 0 262 280 81 43 chr9 98261704 98261890 -44009554 + L1M4b LINE L1 1332 1524 -5335 765 163 8 0 chr9 98261895 98262018 -44009426 + AluJb SINE Alu 2 125 -187 789 95 107 25 chr9 98262021 98262159 -44009285 - MER39B LTR ERV1 -511 196 8 2300 193 102 40 chr9 98262495 98263121 -44008323 - L1MD2 LINE L1 -327 6032 5368 1692 226 42 24 chr9 98263180 98263605 -44007839 - MER74B LTR ERVL -67 555 123 261 194 48 87 chr9 98263668 98263771 -44007673 - L1MD2 LINE L1 -872 5370 5272 * 3337 248 61 36 chr9 98263752 98264499 -44006945 - L1MD2 LINE L1 -2400 3746 2948 2440 73 0 0 chr9 98264499 98264799 -44006645 - AluY SINE Alu -7 304 5 3337 248 61 36 chr9 98264799 98265421 -44006023 - L1MD2 LINE L1 -3198 2948 2343 2919 180 60 27 chr9 98265406 98265822 -44005622 - L1MB5 LINE L1 -275 5899 5498 * 2066 123 7 0 chr9 98265822 98266130 -44005314 - AluSc SINE Alu 0 310 1 2919 180 60 27 chr9 98266130 98266544 -44004900 - L1MB5 LINE L1 -676 5498 5099 1830 172 0 7 chr9 98266544 98266834 -44004610 + AluJb SINE Alu 1 288 -24 2919 180 60 27 chr9 98266834 98267185 -44004259 - L1MB5 LINE L1 -1075 5099 4695 2028 222 74 44 chr9 98267208 98267695 -44003749 - L1MB5 LINE L1 -2832 3314 2794 1868 159 14 3 chr9 98267695 98267985 -44003459 - AluJb SINE Alu -19 293 1 2028 222 74 44 chr9 98267985 98268267 -44003177 - L1MB5 LINE L1 -3352 2794 2522 21 0 0 0 chr9 98268838 98268859 -44002585 + AT_rich Low_complexity Low_complexity 1 21 0 311 258 32 11 chr9 98269915 98270008 -44001436 - L2 LINE L2 -9 3304 3210 2553 284 70 23 chr9 98271056 98272011 -43999433 - HERVL40 LTR ERVL -2009 3521 2522 753 298 61 53 chr9 98272011 98272353 -43999091 - HERVL40 LTR ERVL -3928 1602 1258 366 326 82 23 chr9 98272700 98272738 -43998706 - MLT1J2 LTR MaLR -30 416 382 2159 221 47 17 chr9 98272738 98273272 -43998172 - MER44D DNA MER2_type 0 605 1 366 326 82 23 chr9 98273272 98273623 -43997821 - MLT1J2 LTR MaLR -64 382 6 275 258 278 0 chr9 98276463 98276672 -43994772 - L1ME3A LINE L1 -221 5949 5683 1420 110 35 0 chr9 98276777 98276977 -43994467 + L1PB1 LINE L1 5945 6151 0 2411 103 0 0 chr9 98276994 98277305 -43994139 + AluY SINE Alu 1 311 0 555 298 56 27 chr9 98277318 98277793 -43993651 - L1ME3A LINE L1 -591 5571 5088 1481 118 5 5 chr9 98278584 98278788 -43992656 + AluJo SINE Alu 6 209 -103 4321 168 32 37 chr9 98278888 98279487 -43991957 + L1MB7 LINE L1 5272 5866 -318 1971 124 0 42 chr9 98279487 98279793 -43991651 + AluSq SINE Alu 1 293 -20 4321 168 32 37 chr9 98279793 98280102 -43991342 + L1MB7 LINE L1 5866 6175 -9 2784 241 54 25 chr9 98280143 98281112 -43990332 + L1ME3 LINE L1 3464 4460 -1686 1875 250 161 33 chr9 98281126 98282488 -43988956 + L1ME3 LINE L1 4615 6162 0 751 192 38 125 chr9 98282630 98282760 -43988684 + MLT1B LTR MaLR 157 229 -161 2452 75 0 0 chr9 98282760 98283055 -43988389 - AluSx SINE Alu -17 295 1 751 192 38 125 chr9 98283055 98283204 -43988240 + MLT1B LTR MaLR 229 389 -1 1998 156 0 0 chr9 98284237 98284539 -43986905 - AluSx SINE Alu -10 302 1 685 215 34 120 chr9 98285513 98285672 -43985772 - MER20 DNA MER1_type 0 219 85 1881 124 0 35 chr9 98285672 98285962 -43985482 + AluSx SINE Alu 1 280 -32 685 215 34 120 chr9 98285962 98286035 -43985409 - MER20 DNA MER1_type -134 85 7 241 254 17 0 chr9 98286083 98286142 -43985302 + Charlie5 DNA MER1_type 5 64 -2548 470 169 97 24 chr9 98286142 98286266 -43985178 + Charlie5 DNA MER1_type 2426 2558 -54 236 286 234 13 chr9 98286515 98286669 -43984775 + MIR SINE MIR 20 207 -55 2545 62 0 0 chr9 98287699 98288006 -43983438 - AluSx SINE Alu -5 307 1 23 54 0 0 chr9 98289098 98289135 -43982309 + AT_rich Low_complexity Low_complexity 1 37 0 824 167 0 0 chr9 98289343 98289475 -43981969 - AluJb SINE Alu -13 299 168 1348 128 4 77 chr9 98289605 98289839 -43981605 - AluJb SINE Alu -91 221 5 2179 138 0 0 chr9 98289853 98290164 -43981280 - AluSx SINE Alu -1 311 1 1944 126 129 21 chr9 98290603 98290936 -43980508 + MER39B LTR ERV1 8 376 -277 1003 115 185 35 chr9 98290936 98291008 -43980436 - MER30 DNA MER1_type 0 230 170 2005 35 4 0 chr9 98291008 98291240 -43980204 - AluY SINE Alu -78 233 1 1003 115 185 35 chr9 98291240 98291367 -43980077 - MER30 DNA MER1_type -60 170 1 1371 113 45 0 chr9 98291372 98291593 -43979851 + MER39B LTR ERV1 374 604 -49 254 204 103 0 chr9 98293672 98293752 -43977692 - MIR SINE MIR -76 132 46 245 290 10 10 chr9 98294568 98294668 -43976776 + LTR58 LTR ERV1 350 449 -230 2793 123 31 7 chr9 98294885 98295300 -43976144 - MSTA LTR MaLR 0 428 4 274 262 102 74 chr9 98295321 98295725 -43975719 - L1M4 LINE L1 -2136 4010 3596 513 200 104 86 chr9 98295845 98295901 -43975543 - L1M4 LINE L1 -922 5224 5170 1958 132 24 44 chr9 98295901 98296088 -43975356 - L1PB4 LINE L1 -5 6151 5973 2252 107 0 0 chr9 98296088 98296386 -43975058 - AluSq SINE Alu -15 298 1 1958 132 24 44 chr9 98296386 98296539 -43974905 - L1PB4 LINE L1 -183 5973 5818 513 200 104 86 chr9 98296539 98296702 -43974742 - L1M4 LINE L1 -976 5170 5001 1392 171 52 45 chr9 98296702 98296988 -43974456 - AluJo SINE Alu -16 296 9 752 75 19 9 chr9 98297052 98297159 -43974285 + MER83 LTR ERV1 1 108 -340 * 1759 175 63 70 chr9 98297146 98297558 -43973886 + MER83 LTR ERV1 39 447 -1 2787 186 37 6 chr9 98297564 98298074 -43973370 + MER83-int LTR ERV1 28 553 -3732 555 204 11 0 chr9 98299728 98299821 -43971623 + MER83-int LTR ERV1 539 632 -4248 253 202 21 53 chr9 98299866 98299960 -43971484 - L1M4 LINE L1 -1249 4897 4807 2371 86 13 0 chr9 98299995 98300298 -43971146 - AluSx SINE Alu -5 307 1 495 283 75 0 chr9 98300298 98300538 -43970906 - L1M4 LINE L1 -1322 4824 4567 323 180 0 0 chr9 98301059 98301120 -43970324 + Charlie7 DNA MER1_type 2491 2551 -61 296 83 0 0 chr9 98301304 98301340 -43970104 + U2 snRNA snRNA 1 36 -152 1359 95 0 6 chr9 98301559 98301738 -43969706 - AluSq SINE Alu -15 298 121 2273 91 0 0 chr9 98301748 98302034 -43969410 - AluSg SINE Alu -24 286 1 2608 204 129 9 chr9 98302057 98302936 -43968508 - L1ME1 LINE L1 -4 6162 5188 1025 168 12 0 chr9 98302939 98303112 -43968332 - FRAM SINE Alu -1 175 1 2379 233 80 79 chr9 98303113 98303690 -43967754 - L1ME1 LINE L1 -948 5198 4623 1983 126 0 58 chr9 98303690 98304015 -43967429 - AluSx SINE Alu -6 306 1 2379 233 80 79 chr9 98304015 98304169 -43967275 - L1ME1 LINE L1 -1523 4623 4471 1967 121 16 20 chr9 98304169 98304475 -43966969 - AluSx SINE Alu -7 305 1 2379 233 80 79 chr9 98304475 98304631 -43966813 - L1ME1 LINE L1 -1675 4471 4317 2046 115 14 0 chr9 98304631 98304918 -43966526 - AluSx SINE Alu -21 291 1 2379 233 80 79 chr9 98304918 98305134 -43966310 - L1ME1 LINE L1 -1829 4317 4089 2072 132 13 0 chr9 98305134 98305438 -43966006 - AluSx SINE Alu 0 312 5 2379 233 80 79 chr9 98305438 98305580 -43965864 - L1ME1 LINE L1 -2057 4089 3949 233 373 8 8 chr9 98306192 98306310 -43965134 - MLT1J2 LTR MaLR -315 135 18 2442 101 0 0 chr9 98309519 98309826 -43961618 - AluSx SINE Alu -5 307 1 355 235 41 10 chr9 98310547 98310645 -43960799 + MER104 DNA Tc2 41 141 -39 2319 85 24 3 chr9 98310646 98310940 -43960504 - AluY SINE Alu -11 300 1 333 307 21 69 chr9 98311643 98311832 -43959612 - L1ME1 LINE L1 -3097 3049 2870 799 262 87 5 chr9 98312063 98312269 -43959175 - MER58A DNA MER1_type 0 224 2 14127 30 3 0 chr9 98312840 98314488 -43956956 + L1P LINE L1 3444 5096 -1050 378 0 0 0 chr9 98314500 98314542 -43956902 + (CA)n Simple_repeat Simple_repeat 2 43 0 817 216 7 0 chr9 98314542 98314695 -43956749 + FRAM SINE Alu 1 154 -22 2209 76 3 30 chr9 98314700 98315002 -43956442 + AluSg SINE Alu 1 294 -16 1955 124 3 10 chr9 98315651 98315950 -43955494 - AluSp SINE Alu -16 297 1 242 277 50 20 chr9 98316264 98316365 -43955079 + MLT1K LTR MaLR 69 172 -416 2732 143 61 22 chr9 98316962 98317549 -43953895 + L1MB4 LINE L1 5534 6177 -2 715 216 7 7 chr9 98317639 98317792 -43953652 - L1ME2 LINE L1 -10 6154 6002 2141 85 46 0 chr9 98317810 98318092 -43953352 - AluSg1 SINE Alu -14 295 1 778 134 0 0 chr9 98318474 98318593 -43952851 + L1M4 LINE L1 5693 5811 -363 233 152 0 0 chr9 98318606 98318639 -43952805 - L1M3 LINE L1 -470 5710 5678 5856 47 0 20 chr9 98319603 98319967 -43951477 + L1PA5 LINE L1 5469 5814 -340 2635 36 0 0 chr9 98319967 98320269 -43951175 + AluY SINE Alu 1 302 -9 5856 47 0 20 chr9 98320269 98320602 -43950842 + L1PA5 LINE L1 5814 6152 -2 2123 144 23 6 chr9 98320602 98320955 -43950489 + MER31A LTR ERV1 127 485 0 1747 189 16 0 chr9 98320966 98321272 -43950172 - AluJo SINE Alu -1 311 1 11525 186 47 5 chr9 98321273 98323344 -43948100 + ERVL LTR ERVL 1351 3509 -2255 393 134 15 0 chr9 98324386 98324453 -43946991 - L1MB5 LINE L1 -6 6168 6101 1804 158 0 24 chr9 98325230 98325528 -43945916 + AluJo SINE Alu 4 294 -18 275 333 92 11 chr9 98326815 98326989 -43944455 - MIR SINE MIR -54 208 21 22 70 0 0 chr9 98327755 98327798 -43943646 + AT_rich Low_complexity Low_complexity 1 43 0 6009 85 5 39 chr9 98328127 98329069 -43942375 - L1PB1 LINE L1 -1 6150 5206 1126 165 14 14 chr9 98329337 98329549 -43941895 - LTR22 LTR ERVK -237 272 61 207 0 0 0 chr9 98331568 98331591 -43939853 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7839 167 21 61 chr9 98331698 98333419 -43938025 + L1MA4 LINE L1 237 1888 -5677 2195 152 2 19 chr9 98333410 98333832 -43937612 + L1MA4 LINE L1 6018 6432 -1133 * 806 122 0 72 chr9 98333839 98333978 -43937466 + FLAM_C SINE Alu 6 134 -9 1449 202 23 3 chr9 98333978 98334329 -43937115 + L1MA4 LINE L1 6424 6781 -784 879 216 12 12 chr9 98334330 98334492 -43936952 + AluJb SINE Alu 133 294 -18 3882 171 68 21 chr9 98334492 98335384 -43936060 + L1MA4 LINE L1 6778 7711 -8 4697 105 11 9 chr9 98336134 98336875 -43934569 + L1PB2 LINE L1 5397 6138 -13 272 231 90 15 chr9 98337245 98337379 -43934065 - L1ME LINE L1 -325 5796 5653 367 316 0 0 chr9 98337660 98337755 -43933689 - L2 LINE L2 -4 3309 3215 2318 63 0 47 chr9 98337797 98338114 -43933330 + AluY SINE Alu 1 302 -9 922 220 33 33 chr9 98338353 98338626 -43932818 - L1ME LINE L1 -1776 4370 4098 4161 250 37 10 chr9 98338628 98340041 -43931403 - L1M4 LINE L1 -1744 4402 2952 1176 248 20 32 chr9 98340139 98340539 -43930905 - L1M4 LINE L1 -1133 5013 4619 270 0 0 0 chr9 98340579 98340609 -43930835 + (TG)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr9 98341116 98341138 -43930306 + AT_rich Low_complexity Low_complexity 1 22 0 827 245 33 48 chr9 98342348 98342679 -43928765 + L1MDa LINE L1 105 430 -6110 404 300 184 30 chr9 98342765 98342998 -43928446 + L1MDa LINE L1 602 870 -5670 606 226 79 24 chr9 98343409 98343661 -43927783 + L1MDa LINE L1 1026 1291 -5252 * 2473 231 150 51 chr9 98343644 98344424 -43927020 + L1MDa LINE L1 1003 1705 -4835 1947 166 0 16 chr9 98344424 98344738 -43926706 - AluJb SINE Alu -3 309 1 2473 231 150 51 chr9 98344738 98345233 -43926211 + L1MDa LINE L1 1705 2415 -4125 2249 99 6 13 chr9 98345233 98345546 -43925898 + AluSq SINE Alu 3 313 0 2473 231 150 51 chr9 98345546 98345591 -43925853 + L1MDa LINE L1 2415 2454 -4086 1738 91 0 0 chr9 98345622 98345832 -43925612 + AluSx SINE Alu 1 210 -102 245 128 0 0 chr9 98345834 98345873 -43925571 + AluSx SINE Alu 249 287 -16 546 57 0 0 chr9 98345873 98345943 -43925501 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 258 255 49 91 chr9 98346052 98346315 -43925129 + L1MDa LINE L1 1985 2236 -4485 947 244 94 25 chr9 98346326 98346773 -43924671 + L1MDa LINE L1 2778 3255 -3285 2902 236 102 20 chr9 98346794 98348106 -43923338 + L1MDa LINE L1 32 1560 -4980 509 217 96 30 chr9 98348109 98348275 -43923169 + L1MD2 LINE L1 5964 6140 -219 266 218 0 0 chr9 98348278 98348333 -43923111 + L1MD2 LINE L1 6195 6249 -110 2268 96 0 17 chr9 98348381 98348683 -43922761 + AluY SINE Alu 1 297 -14 3773 210 96 17 chr9 98348687 98350060 -43921384 - L1MDa LINE L1 -3712 2828 1346 1837 204 77 59 chr9 98350065 98350625 -43920819 - L1MC3 LINE L1 -21 7764 7195 259 212 59 24 chr9 98350631 98350716 -43920728 - MLT1F1 LTR MaLR -443 124 37 937 145 87 0 chr9 98350717 98350924 -43920520 - L1MC3 LINE L1 -687 7098 6874 1327 217 91 30 chr9 98350924 98351061 -43920383 + MSTB2 LTR MaLR 1 128 -329 2205 120 53 8 chr9 98351061 98351420 -43920024 + THE1C LTR MaLR 1 375 0 1327 217 91 30 chr9 98351420 98351711 -43919733 + MSTB2 LTR MaLR 128 455 -2 5307 211 90 61 chr9 98351713 98353167 -43918277 + THE1C-int LTR MaLR 1 1507 -144 2076 115 42 0 chr9 98353167 98353455 -43917989 - AluSx SINE Alu -12 300 1 5307 211 90 61 chr9 98353455 98353605 -43917839 + THE1C-int LTR MaLR 1507 1651 0 1858 149 70 65 chr9 98353605 98354035 -43917409 + MSTB1 LTR MaLR 1 432 0 696 176 26 13 chr9 98354035 98354188 -43917256 - L1MC3 LINE L1 -907 6878 6724 * 1447 255 76 0 chr9 98354183 98354802 -43916642 - L1 LINE L1 -2668 3478 2813 1005 181 0 23 chr9 98354803 98354980 -43916464 - AluJo SINE Alu -139 173 1 1573 252 97 6 chr9 98354983 98355661 -43915783 - L1MDa LINE L1 -3113 3427 2688 2476 78 7 0 chr9 98355661 98355968 -43915476 - AluSq SINE Alu -4 309 1 1220 245 125 38 chr9 98355973 98356478 -43914966 - L1MDa LINE L1 -5808 732 16 1016 245 159 10 chr9 98356520 98357034 -43914410 - L1MC4a LINE L1 -1642 6166 5576 226 403 52 16 chr9 98357151 98357342 -43914102 + L2 LINE L2 2836 3033 -280 4128 247 65 17 chr9 98357696 98359366 -43912078 + L1MD2 LINE L1 2965 4713 -1433 3635 203 78 11 chr9 98359370 98360756 -43910688 + L1MD2 LINE L1 4827 7994 -1 2584 233 64 25 chr9 98360794 98361714 -43909730 + L1ME1 LINE L1 5195 6162 -4 1725 109 17 4 chr9 98362273 98362511 -43908933 - AluSc SINE Alu -68 241 1 13406 182 25 19 chr9 98362605 98366048 -43905396 + L1PB3 LINE L1 1434 4919 -1235 1942 133 58 36 chr9 98366048 98366378 -43905066 - MER1B DNA MER1_type 0 337 1 13406 182 25 19 chr9 98366378 98367619 -43903825 + L1PB3 LINE L1 4919 6151 -3 23 0 0 0 chr9 98367961 98367984 -43903460 + AT_rich Low_complexity Low_complexity 1 23 0 558 272 118 70 chr9 98368199 98368699 -43902745 + L1M4 LINE L1 3426 3949 -2197 1463 196 3 62 chr9 98368990 98369312 -43902132 + AluJo SINE Alu 2 304 -8 2248 113 51 23 chr9 98369471 98369825 -43901619 + THE1B LTR MaLR 1 364 0 11360 86 7 1 chr9 98369825 98371388 -43900056 + THE1B-int LTR MaLR 1 1573 -7 2116 103 54 68 chr9 98371394 98371763 -43899681 + THE1B LTR MaLR 1 364 0 817 253 0 0 chr9 98375590 98375764 -43895680 - FAM SINE Alu -1 174 1 824 199 0 7 chr9 98375874 98376025 -43895419 + FAM SINE Alu 16 165 -20 2279 112 0 0 chr9 98376557 98376851 -43894593 + AluSg SINE Alu 1 294 -16 1549 199 7 0 chr9 98377724 98378005 -43893439 + AluSx SINE Alu 1 283 -29 186 302 93 22 chr9 98379432 98379571 -43891873 + MIR SINE MIR 47 195 -67 218 330 122 39 chr9 98379604 98379834 -43891610 - MIR SINE MIR 0 262 14 1514 90 5 5 chr9 98381030 98381241 -43890203 + AluSq SINE Alu 1 211 -102 414 100 0 0 chr9 98381251 98381311 -43890133 + (A)n Simple_repeat Simple_repeat 1 60 0 2091 80 7 4 chr9 98382379 98382654 -43888790 - AluSq SINE Alu -37 276 1 1102 230 38 60 chr9 98382669 98382941 -43888503 - L1M4 LINE L1 -5030 1512 1236 2095 110 24 14 chr9 98382941 98383233 -43888211 - AluSx SINE Alu -17 295 1 1102 230 38 60 chr9 98383233 98383255 -43888189 - L1M4 LINE L1 -5306 1236 1215 878 135 8 8 chr9 98383255 98383388 -43888056 - FLAM_C SINE Alu 0 133 1 1102 230 38 60 chr9 98383388 98383614 -43887830 - L1M4 LINE L1 -5327 1215 995 1640 186 0 46 chr9 98383614 98383785 -43887659 - AluJo SINE Alu -19 293 141 2276 73 6 35 chr9 98383785 98384101 -43887343 - AluY SINE Alu -4 307 1 1640 186 0 46 chr9 98384101 98384236 -43887208 - AluJo SINE Alu -171 141 1 1102 230 38 60 chr9 98384236 98384355 -43887089 - L1M4 LINE L1 -5547 995 875 274 283 98 29 chr9 98384389 98384562 -43886882 - L1M4 LINE L1 -5655 887 703 227 220 17 0 chr9 98384930 98384989 -43886455 - L1M4 LINE L1 -6389 153 94 33 46 0 15 chr9 98385088 98385123 -43886321 + AT_rich Low_complexity Low_complexity 1 36 -28 2117 132 0 0 chr9 98385123 98385410 -43886034 + AluSg SINE Alu 1 287 -23 33 46 0 15 chr9 98385410 98385439 -43886005 + AT_rich Low_complexity Low_complexity 36 64 0 497 255 215 13 chr9 98385745 98386047 -43885397 - L1ME3A LINE L1 -7 6163 5801 537 247 48 5 chr9 98386784 98386970 -43884474 - L1MCa LINE L1 -5280 1146 953 449 306 31 59 chr9 98387182 98387259 -43884185 + L1ME1 LINE L1 4842 4920 -1226 2425 74 0 0 chr9 98387259 98387558 -43883886 + AluY SINE Alu 2 300 -11 449 306 31 59 chr9 98387558 98387573 -43883871 + L1ME1 LINE L1 4920 4934 -1212 1855 149 43 25 chr9 98387573 98387941 -43883503 - THE1C LTR MaLR 0 375 1 449 306 31 59 chr9 98387941 98388069 -43883375 + L1ME1 LINE L1 4934 5057 -1089 1732 172 10 33 chr9 98388071 98388374 -43883070 + AluJo SINE Alu 1 296 -16 236 282 39 0 chr9 98388412 98388515 -43882929 + L1ME1 LINE L1 5317 5423 -747 1135 274 76 23 chr9 98388542 98389097 -43882347 + L1ME1 LINE L1 5576 6159 -7 249 338 113 6 chr9 98389226 98389386 -43882058 + MIR SINE MIR 84 260 -2 1853 191 23 28 chr9 98390096 98390493 -43880951 + MSTD LTR MaLR 2 396 0 2036 199 125 49 chr9 98391793 98391900 -43879544 - L1M4 LINE L1 -3104 3278 3181 1809 149 10 23 chr9 98391900 98392208 -43879236 - AluJo SINE Alu -8 304 1 2036 199 125 49 chr9 98392208 98392902 -43878542 - L1M4 LINE L1 -3201 3181 2541 2380 75 0 0 chr9 98392902 98393208 -43878236 - AluY SINE Alu -5 306 1 2036 199 125 49 chr9 98393208 98393292 -43878152 - L1M4 LINE L1 -3841 2541 2465 2168 128 3 0 chr9 98393292 98393597 -43877847 + AluSx SINE Alu 6 311 -1 2036 199 125 49 chr9 98393597 98394187 -43877257 - L1M4 LINE L1 -3917 2465 1681 357 24 0 0 chr9 98394187 98394229 -43877215 + (TG)n Simple_repeat Simple_repeat 1 42 0 3683 184 58 35 chr9 98394245 98395775 -43875669 - L1MA9 LINE L1 -81 6231 4664 1186 204 0 0 chr9 98395790 98396045 -43875399 + L1 LINE L1 3828 4082 -2064 672 198 60 0 chr9 98396049 98396216 -43875228 - L1MA9 LINE L1 -1441 4705 4529 * 1009 137 50 76 chr9 98396214 98396476 -43874968 - L1MA9 LINE L1 -279 6033 5779 * 7508 206 45 42 chr9 98396473 98398740 -43872704 - L1MA9 LINE L1 -1619 4527 2254 4658 195 18 0 chr9 98398741 98399617 -43871827 - MER54A LTR ERVL -2 899 8 243 0 0 0 chr9 98399617 98399644 -43871800 + (CA)n Simple_repeat Simple_repeat 2 28 0 254 211 0 0 chr9 98399647 98399704 -43871740 - L1M4c LINE L1 -3889 3280 3224 * 42471 33 2 6 chr9 98399695 98405875 -43865569 - L1PA3 LINE L1 0 6155 4 655 164 0 0 chr9 98405882 98406010 -43865434 - L1M4c LINE L1 -3933 3234 3107 908 318 46 52 chr9 98406019 98406950 -43864494 - L1M4c LINE L1 -5786 1382 399 546 97 115 62 chr9 98406994 98407107 -43864337 - L1M4c LINE L1 -4762 1622 1504 280 98 0 0 chr9 98407107 98407148 -43864296 + MSTB LTR MaLR 1 41 -385 208 143 0 0 chr9 98407149 98407184 -43864260 + (A)n Simple_repeat Simple_repeat 1 35 0 1023 167 11 11 chr9 98407205 98407385 -43864059 + MSTB LTR MaLR 31 210 -216 * 2147 116 3 3 chr9 98407378 98407696 -43863748 + THE1C LTR MaLR 58 375 0 7334 180 13 17 chr9 98407696 98409555 -43861889 + L1PA13 LINE L1 1033 2901 -3896 13064 190 29 3 chr9 98409563 98410268 -43861176 + L1PA13 LINE L1 3098 3784 -3030 258 32 0 0 chr9 98410268 98410299 -43861145 + (CA)n Simple_repeat Simple_repeat 2 32 0 13064 190 29 3 chr9 98410299 98413214 -43858230 + L1PA13 LINE L1 3784 6795 -19 39 68 0 0 chr9 98413231 98413305 -43858139 + AT_rich Low_complexity Low_complexity 1 74 0 233 354 10 0 chr9 98414071 98414170 -43857274 + L1MC/D LINE L1 5508 5607 -2201 1632 130 162 46 chr9 98414210 98414248 -43857196 - MER31A LTR ERV1 0 485 453 2662 127 26 17 chr9 98414248 98414667 -43856777 - MSTB LTR MaLR -3 423 1 1632 130 162 46 chr9 98414667 98415059 -43856385 - MER31A LTR ERV1 -32 453 5 2392 74 0 7 chr9 98415294 98415593 -43855851 - AluY SINE Alu -14 297 1 277 209 78 31 chr9 98415866 98415995 -43855449 + L1MC/D LINE L1 5694 5828 -1980 2508 256 79 14 chr9 98417325 98418511 -43852933 + L1M4 LINE L1 2583 3845 -2301 1847 200 59 4 chr9 98418515 98418989 -43852455 + L1MB3 LINE L1 4903 5402 -744 399 202 48 0 chr9 98418989 98419093 -43852351 + MER74A LTR ERVL 1 109 -449 853 128 96 32 chr9 98419201 98419389 -43852055 + THE1C LTR MaLR 176 375 0 2358 188 31 2 chr9 98419389 98419879 -43851565 + L1MB3 LINE L1 5666 6169 -14 564 196 42 93 chr9 98419894 98420108 -43851336 + L1M4 LINE L1 3842 4044 -2102 527 216 24 115 chr9 98420122 98420330 -43851114 + MLT1A1 LTR MaLR 1 189 -176 829 260 29 10 chr9 98420404 98420712 -43850732 + L1M4 LINE L1 4080 4393 -1753 1082 254 128 48 chr9 98420853 98421488 -43849956 - L1MEc LINE L1 -2624 3522 2939 2054 125 10 0 chr9 98421488 98421776 -43849668 - AluSx SINE Alu -21 291 1 1082 254 128 48 chr9 98421776 98421849 -43849595 - L1MEc LINE L1 -3207 2939 2873 651 185 27 0 chr9 98421849 98421995 -43849449 - L1MA10 LINE L1 -5 6329 6180 1082 254 128 48 chr9 98421995 98422621 -43848823 - L1MEc LINE L1 -3273 2873 2110 306 0 0 0 chr9 98422713 98422747 -43848697 + (CA)n Simple_repeat Simple_repeat 2 35 0 2325 91 0 0 chr9 98423014 98423337 -43848107 + AluSx SINE Alu 1 323 0 303 258 89 136 chr9 98423342 98423555 -43847889 - L1MC/D LINE L1 -1999 5809 5607 24 0 0 0 chr9 98423668 98423692 -43847752 + AT_rich Low_complexity Low_complexity 1 24 0 328 206 68 34 chr9 98423715 98423861 -43847583 - L1MC/D LINE L1 -2359 5449 5299 386 293 58 67 chr9 98424204 98424412 -43847032 + L1MC5 LINE L1 7226 7431 -530 1648 174 54 10 chr9 98424417 98424715 -43846729 + AluJo SINE Alu 1 311 -1 1212 184 37 5 chr9 98424922 98425140 -43846304 - AluJb SINE Alu -2 310 86 355 245 67 130 chr9 98425691 98426109 -43845335 - L1MC/D LINE L1 -1290 4856 4474 1733 166 3 7 chr9 98426109 98426393 -43845051 - AluJo SINE Alu -18 294 12 355 245 67 130 chr9 98426393 98426481 -43844963 - L1MC/D LINE L1 -1672 4474 4382 2935 207 66 3 chr9 98428712 98429349 -43842095 + L1MC3 LINE L1 7109 7785 0 1963 138 39 0 chr9 98430635 98430918 -43840526 + AluSq SINE Alu 1 294 -19 354 313 13 33 chr9 98431142 98431292 -43840152 - L2 LINE L2 0 3313 3167 1378 253 52 39 chr9 98431538 98431821 -43839623 + L1 LINE L1 2475 2768 -3378 2287 105 0 3 chr9 98431821 98432116 -43839328 + AluSg SINE Alu 1 294 -16 1378 253 52 39 chr9 98432116 98432298 -43839146 + L1 LINE L1 2768 2946 -3200 22 0 0 0 chr9 98433414 98433436 -43838008 + AT_rich Low_complexity Low_complexity 1 22 0 200 304 176 8 chr9 98433615 98433740 -43837704 + L2 LINE L2 2553 2698 -616 391 284 50 35 chr9 98433807 98434008 -43837436 + L1MEc LINE L1 92 295 -6101 2021 216 112 87 chr9 98434108 98434900 -43836544 - MER21B LTR ERV1 -51 812 1 1534 304 86 40 chr9 98435169 98435493 -43835951 + L1MEc LINE L1 700 1008 -5388 2476 80 0 0 chr9 98435493 98435795 -43835649 + AluY SINE Alu 1 302 -9 1534 304 86 40 chr9 98435795 98436959 -43834485 + L1MEc LINE L1 1008 2256 -4140 593 263 6 6 chr9 98436996 98437175 -43834269 + L1MEc LINE L1 2442 2620 -3595 1115 295 54 41 chr9 98437219 98437704 -43833740 + MLT2B3 LTR ERVL 1 491 -63 229 258 34 0 chr9 98437704 98437793 -43833651 + (TAAA)n Simple_repeat Simple_repeat 2 93 0 279 125 89 0 chr9 98437813 98437864 -43833580 + MLT2D LTR ERVL 367 414 0 * 1164 171 34 38 chr9 98437864 98438090 -43833354 + MLT2D LTR ERVL 39 263 -151 812 322 60 0 chr9 98438141 98438476 -43832968 + HERVL-D LTR ERVL 4 358 -5296 15668 147 21 5 chr9 98438509 98441131 -43830313 - L1P LINE L1 -901 5245 2583 661 185 9 0 chr9 98441440 98441548 -43829896 + FLAM_A SINE Alu 11 119 -23 579 186 42 17 chr9 98442000 98442118 -43829326 - FLAM_A SINE Alu -12 121 1 436 191 144 117 chr9 98443197 98443385 -43828059 + MER31B LTR ERV1 30 222 -244 382 172 58 0 chr9 98443740 98443827 -43827617 + MIR SINE MIR 60 151 -111 296 194 16 0 chr9 98444193 98444255 -43827189 - MIR SINE MIR -89 173 111 735 231 61 22 chr9 98446205 98446434 -43825010 + MER31B LTR ERV1 225 462 -4 243 0 0 0 chr9 98446434 98446461 -43824983 + (T)n Simple_repeat Simple_repeat 1 27 0 5236 227 62 43 chr9 98446465 98446874 -43824570 - HERVL68 LTR ERVL -661 2376 1976 2435 53 13 13 chr9 98446874 98447174 -43824270 + AluY SINE Alu 1 300 -11 5236 227 62 43 chr9 98447174 98448666 -43822778 - HERVL68 LTR ERVL -1061 1976 346 561 159 53 0 chr9 98448857 98448970 -43822474 - L1MB4 LINE L1 -15 6165 6047 592 172 177 61 chr9 98449508 98449777 -43821667 - MLT1E1 LTR MaLR 0 610 353 1879 159 3 7 chr9 98450126 98450415 -43821029 + AluSx SINE Alu 1 288 -24 1038 157 6 22 chr9 98450796 98450974 -43820470 + AluJb SINE Alu 127 301 -11 22 0 0 0 chr9 98450974 98450996 -43820448 + AT_rich Low_complexity Low_complexity 1 22 0 384 187 331 18 chr9 98451070 98451236 -43820208 - MER20 DNA MER1_type 0 219 2 2155 114 0 0 chr9 98452501 98452840 -43818604 + AluSg SINE Alu 1 339 0 2256 96 24 0 chr9 98452840 98453132 -43818312 + AluSc SINE Alu 1 299 -10 435 153 0 0 chr9 98454526 98454598 -43816846 - L1MA9 LINE L1 -2 6310 6239 595 88 167 0 chr9 98454696 98454798 -43816646 - L1MA7 LINE L1 -1 6290 6172 1962 133 0 61 chr9 98454840 98455170 -43816274 - AluJb SINE Alu -2 310 1 3761 212 25 48 chr9 98455170 98455994 -43815450 - L1 LINE L1 -3108 3274 2446 2112 142 3 0 chr9 98455994 98456305 -43815139 - AluSx SINE Alu 0 312 1 3761 212 25 48 chr9 98456305 98456716 -43814728 - L1 LINE L1 -3936 2446 2027 756 256 24 9 chr9 98456768 98456979 -43814465 - L1M2 LINE L1 -4171 2678 2465 515 277 116 54 chr9 98456984 98457485 -43813959 - L1ME4a LINE L1 -205 5916 5385 2003 156 7 0 chr9 98457767 98458068 -43813376 + AluJb SINE Alu 1 303 -9 2219 119 0 0 chr9 98458091 98458385 -43813059 + AluSg SINE Alu 1 294 -16 271 167 19 0 chr9 98458703 98458757 -43812687 - MER116 DNA Mariner 0 80 26 2432 81 0 0 chr9 98458779 98459076 -43812368 - AluY SINE Alu -14 297 1 318 148 102 23 chr9 98461338 98461426 -43810018 + L1ME1 LINE L1 5282 5376 -770 835 184 180 62 chr9 98461433 98461755 -43809689 + L1ME1 LINE L1 5813 6334 0 180 0 0 0 chr9 98461899 98461919 -43809525 + (TTA)n Simple_repeat Simple_repeat 3 22 0 439 97 29 39 chr9 98462002 98462105 -43809339 + CT-rich Low_complexity Low_complexity 1 102 0 1276 247 26 37 chr9 98462370 98462751 -43808693 - MLT2C1 LTR ERVL -19 378 2 226 321 36 0 chr9 98462767 98462851 -43808593 - MIR SINE MIR -98 164 78 1943 108 66 25 chr9 98462973 98463259 -43808185 + AluSx SINE Alu 1 298 -14 2284 114 0 6 chr9 98463398 98463713 -43807731 - AluSq SINE Alu 0 313 1 393 207 114 25 chr9 98463733 98463874 -43807570 + L1ME LINE L1 5656 5803 -359 2353 108 0 0 chr9 98464392 98464689 -43806755 + AluSx SINE Alu 1 297 -15 294 116 0 0 chr9 98464790 98464833 -43806611 + Alu SINE Alu 249 291 -11 2005 118 50 0 chr9 98464844 98465123 -43806321 + AluSx SINE Alu 3 295 -17 6914 194 75 29 chr9 98465200 98466727 -43804717 - MER4B-int LTR ERV1 -389 3802 2199 2259 89 31 0 chr9 98466727 98467019 -43804425 - AluSc SINE Alu -8 301 1 6914 194 75 29 chr9 98467019 98467061 -43804383 - MER4B-int LTR ERV1 -1992 2199 2160 7488 197 42 34 chr9 98467066 98468674 -43802770 - MER4B-int LTR ERV1 -2269 1922 301 1709 153 10 47 chr9 98468702 98469002 -43802442 - AluJo SINE Alu -23 289 1 987 80 0 0 chr9 98469537 98469662 -43801782 - MER4B-int LTR ERV1 -3434 3324 3200 773 241 12 12 chr9 98469662 98469828 -43801616 + AluJb SINE Alu 135 300 -12 3718 108 70 6 chr9 98469835 98470281 -43801163 + LTR19B LTR ERV1 1 490 -90 2321 101 0 3 chr9 98470281 98470579 -43800865 + AluSx SINE Alu 1 297 -15 3718 108 70 6 chr9 98470579 98470677 -43800767 + LTR19B LTR ERV1 490 580 0 763 183 83 30 chr9 98470680 98470849 -43800595 - MER21B-int LTR ERV1 -4011 180 3 3989 193 83 8 chr9 98470859 98471661 -43799783 - MER21B LTR ERV1 0 863 1 180 0 0 0 chr9 98471857 98471877 -43799567 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2041 120 4 0 chr9 98471882 98472157 -43799287 - AluSx SINE Alu -36 276 1 276 314 29 0 chr9 98472158 98472260 -43799184 - MIR SINE MIR -70 192 88 230 125 125 31 chr9 98472534 98472598 -43798846 - L1MA9 LINE L1 0 6312 6243 2241 96 7 10 chr9 98473432 98473735 -43797709 + AluSq SINE Alu 1 302 -11 2217 94 0 7 chr9 98474580 98474866 -43796578 + AluSx SINE Alu 1 284 -28 216 0 0 0 chr9 98476055 98476079 -43795365 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2149 96 7 0 chr9 98476091 98476371 -43795073 - AluSx SINE Alu -30 282 1 546 206 37 7 chr9 98476371 98476507 -43794937 + MER5A DNA MER1_type 45 184 -5 213 241 17 0 chr9 98476512 98476570 -43794874 + MIR SINE MIR 164 222 -40 246 139 56 120 chr9 98476735 98476843 -43794601 - MER92C LTR ERV1 -5 549 449 1844 140 0 7 chr9 98476938 98477223 -43794221 - AluJo SINE Alu -17 295 13 2220 106 0 0 chr9 98477419 98477759 -43793685 - AluSx SINE Alu 0 340 1 1480 237 98 27 chr9 98477860 98478299 -43793145 + MLT1D LTR MaLR 36 505 0 2064 130 23 10 chr9 98478996 98479296 -43792148 - AluSx SINE Alu -8 304 1 357 143 32 0 chr9 98479945 98480008 -43791436 + MER89 LTR ERV1 1 65 -494 982 234 28 1 chr9 98480021 98480349 -43791095 + MER89 LTR ERV1 197 559 0 1194 134 109 53 chr9 98480475 98480722 -43790722 - AluJb SINE Alu -8 304 44 24 32 0 0 chr9 98480823 98480854 -43790590 + AT_rich Low_complexity Low_complexity 1 31 0 2117 168 60 0 chr9 98480909 98481289 -43790155 - MER57A LTR ERV1 0 403 1 2533 69 0 0 chr9 98481603 98481906 -43789538 - AluSc SINE Alu -6 303 1 730 168 0 15 chr9 98482031 98482162 -43789282 + FLAM_C SINE Alu 1 129 -4 261 0 0 0 chr9 98482233 98482262 -43789182 + (T)n Simple_repeat Simple_repeat 1 29 0 202 86 0 114 chr9 98483312 98483382 -43788062 + (T)n Simple_repeat Simple_repeat 1 62 0 1918 114 0 7 chr9 98484964 98485235 -43786209 - AluSq SINE Alu -10 303 35 2304 78 7 3 chr9 98485725 98486021 -43785423 + AluY SINE Alu 1 297 -14 502 243 79 0 chr9 98487483 98487635 -43783809 + MER46C DNA MER2_type 175 338 0 2068 120 10 13 chr9 98487980 98488281 -43783163 - AluSx SINE Alu -12 300 1 2164 109 0 48 chr9 98488283 98488458 -43782986 - AluSx SINE Alu -16 296 141 1919 98 56 52 chr9 98488458 98488764 -43782680 - AluSq SINE Alu -6 307 1 2164 109 0 48 chr9 98488764 98488899 -43782545 - AluSx SINE Alu -171 141 1 263 246 0 0 chr9 98488926 98488983 -43782461 + MIR SINE MIR 206 262 0 2170 97 28 14 chr9 98489678 98489967 -43781477 - AluSg1 SINE Alu -16 293 1 2802 111 64 13 chr9 98491205 98491657 -43779787 + MER9 LTR ERVK 37 511 0 1957 163 64 0 chr9 98491997 98492323 -43779121 - MER7A DNA MER2_type 0 346 2 309 204 130 9 chr9 98492438 98492455 -43778989 - L2 LINE L2 0 3313 3299 2195 136 58 62 chr9 98492455 98492680 -43778764 - Tigger2a DNA MER2_type -2274 434 210 2283 90 0 13 chr9 98492680 98492979 -43778465 + AluY SINE Alu 1 295 -16 2195 136 58 62 chr9 98492979 98493188 -43778256 - Tigger2a DNA MER2_type -2498 210 2 309 204 130 9 chr9 98493188 98493278 -43778166 - L2 LINE L2 -14 3299 3193 3738 170 51 20 chr9 98493279 98493961 -43777483 - ERVL LTR ERVL -1556 4208 3506 1605 114 61 30 chr9 98493961 98494224 -43777220 + MER2 DNA MER2_type 1 271 -74 2403 84 3 0 chr9 98494244 98494542 -43776902 + AluY SINE Alu 1 299 -12 198 266 36 115 chr9 98494564 98494703 -43776741 + L2 LINE L2 3143 3270 -2 2291 91 10 3 chr9 98494766 98495073 -43776371 + AluSq SINE Alu 1 309 -4 927 183 71 0 chr9 98495087 98495256 -43776188 + AluJo SINE Alu 1 181 -131 466 302 48 0 chr9 98495356 98495545 -43775899 + MIR SINE MIR 50 247 -15 420 245 29 0 chr9 98496102 98496204 -43775240 - MER81 DNA DNA -6 108 4 2227 133 0 0 chr9 98496548 98496856 -43774588 + AluSx SINE Alu 1 308 -4 218 284 135 0 chr9 98497445 98497519 -43773925 - MIR3 SINE MIR -40 168 85 245 333 159 0 chr9 98498263 98498464 -43772980 + MIR SINE MIR 30 262 0 214 306 83 0 chr9 98498470 98498542 -43772902 - L2 LINE L2 -49 3223 3146 374 207 80 87 chr9 98499049 98499096 -43772348 - Charlie2 DNA MER1_type 0 2862 2816 1561 163 57 18 chr9 98499096 98499213 -43772231 + AluJo SINE Alu 4 115 -197 210 71 0 0 chr9 98499213 98499241 -43772203 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1561 163 57 18 chr9 98499241 98499406 -43772038 + AluJo SINE Alu 115 297 -15 374 207 80 87 chr9 98499406 98499508 -43771936 - Charlie2 DNA MER1_type -46 2816 2714 756 240 71 18 chr9 98499572 98499839 -43771605 - Charlie2 DNA MER1_type -2540 242 4 720 223 67 111 chr9 98499928 98500377 -43771067 + LTR37B LTR ERV1 10 438 -30 2301 94 10 0 chr9 98500377 98500685 -43770759 - AluSx SINE Alu 0 312 2 213 108 0 0 chr9 98500696 98500733 -43770711 + (T)n Simple_repeat Simple_repeat 1 37 0 185 388 29 29 chr9 98500980 98501150 -43770294 - L2 LINE L2 -457 2857 2688 6031 108 20 20 chr9 98501161 98502206 -43769238 - L1PA14 LINE L1 -17 6144 5102 3725 122 85 34 chr9 98502683 98503308 -43768136 - L1PA8A LINE L1 -18 6113 5457 225 94 0 0 chr9 98503478 98503510 -43767934 + (A)n Simple_repeat Simple_repeat 1 32 0 2153 113 14 0 chr9 98503609 98503901 -43767543 + AluSx SINE Alu 2 297 -15 1213 185 6 118 chr9 98503904 98504234 -43767210 + AluJo SINE Alu 3 295 -7 596 108 0 0 chr9 98504666 98504749 -43766695 - AluJ/FLAM SINE Alu -228 84 2 533 223 146 10 chr9 98504749 98504941 -43766503 + L1MC4a LINE L1 6084 6322 -1486 404 200 185 0 chr9 98504976 98505111 -43766333 + L1MC4a LINE L1 6276 6435 -1373 1201 153 91 0 chr9 98505159 98505368 -43766076 + MER77 LTR ERV1 367 594 -11 1940 164 0 0 chr9 98505503 98505802 -43765642 + AluJo SINE Alu 1 299 -13 1951 120 42 0 chr9 98506096 98506379 -43765065 + AluSx SINE Alu 1 295 -17 1970 131 20 0 chr9 98506545 98506842 -43764602 + AluSq SINE Alu 1 303 -10 1659 124 0 50 chr9 98506854 98507140 -43764304 + AluSx SINE Alu 39 311 0 363 23 0 0 chr9 98507158 98507202 -43764242 + (TG)n Simple_repeat Simple_repeat 2 45 0 2229 94 7 3 chr9 98507235 98507533 -43763911 - AluSq SINE Alu -14 299 1 2163 82 3 70 chr9 98507633 98507962 -43763482 - AluSx SINE Alu -5 307 1 223 294 41 48 chr9 98509733 98509879 -43761565 + MIR3 SINE MIR 2 146 -62 1495 181 32 41 chr9 98511249 98511564 -43759880 - AluJo SINE Alu 0 312 1 2315 60 3 73 chr9 98511709 98512026 -43759418 + AluSc SINE Alu 2 296 -13 1087 135 103 63 chr9 98512033 98512285 -43759159 - MSTB LTR MaLR 0 426 165 1368 136 127 0 chr9 98512286 98512507 -43758937 + AluSx SINE Alu 55 303 -9 996 206 0 0 chr9 98512508 98512688 -43758756 - MSTB LTR MaLR -245 181 2 292 294 13 52 chr9 98512811 98512964 -43758480 - L1M4 LINE L1 -2691 3455 3309 2265 104 3 0 chr9 98512968 98513265 -43758179 - AluSq SINE Alu -15 298 1 1910 158 0 19 chr9 98513266 98513577 -43757867 - AluJo SINE Alu -7 305 1 2346 78 0 20 chr9 98513872 98514178 -43757266 + AluY SINE Alu 1 300 -11 1658 179 3 13 chr9 98514359 98514660 -43756784 - AluJo SINE Alu -13 299 2 2308 207 80 105 chr9 98514716 98514934 -43756510 - L1ME1 LINE L1 -6 6160 5938 2412 78 3 0 chr9 98514934 98515229 -43756215 - AluSp SINE Alu -17 296 1 2308 207 80 105 chr9 98515229 98515582 -43755862 - L1ME1 LINE L1 -228 5938 5577 939 136 0 0 chr9 98515582 98515714 -43755730 + FLAM_C SINE Alu 1 132 -1 2308 207 80 105 chr9 98515714 98515918 -43755526 - L1ME1 LINE L1 -589 5577 5369 1807 178 3 3 chr9 98515918 98516216 -43755228 - AluJb SINE Alu -10 302 5 2308 207 80 105 chr9 98516216 98516554 -43754890 - L1ME1 LINE L1 -797 5369 5024 1918 82 0 114 chr9 98516554 98516871 -43754573 - AluY SINE Alu -15 296 16 469 179 13 0 chr9 98516872 98516950 -43754494 - AluY SINE Alu -238 80 2 2308 207 80 105 chr9 98516950 98517121 -43754323 - L1ME1 LINE L1 -1142 5024 4850 2305 111 0 0 chr9 98517121 98517419 -43754025 - AluSg SINE Alu -12 298 1 2308 207 80 105 chr9 98517419 98517940 -43753504 - L1ME1 LINE L1 -1316 4850 4316 1765 147 26 26 chr9 98517946 98518286 -43753158 - L1MB2 LINE L1 -1 6170 5831 1946 141 0 16 chr9 98518288 98518594 -43752850 - AluJb SINE Alu -11 301 1 375 81 12 93 chr9 98518594 98518680 -43752764 - L1M LINE L1 -839 5332 5254 272 185 231 0 chr9 98518685 98518750 -43752694 + MSTD LTR MaLR 1 80 -348 1379 195 79 10 chr9 98518791 98519094 -43752350 + MSTD LTR MaLR 73 396 0 1579 214 95 118 chr9 98519096 98519842 -43751602 - L1 LINE L1 -894 5252 4629 550 202 0 0 chr9 98519842 98519946 -43751498 - FRAM SINE Alu -6 170 67 1579 214 95 118 chr9 98519946 98520205 -43751239 - L1 LINE L1 -1517 4629 4365 1189 272 86 27 chr9 98520287 98520776 -43750668 - L1MEc LINE L1 -5745 651 134 295 249 60 45 chr9 98522601 98522802 -43748642 + L1ME4a LINE L1 5918 6121 0 291 303 99 49 chr9 98523004 98523146 -43748298 - MIR3 SINE MIR -26 182 34 2042 121 0 42 chr9 98523236 98523543 -43747901 - AluSx SINE Alu -18 294 1 1221 186 0 5 chr9 98523570 98523780 -43747664 - AluJo SINE Alu -11 301 93 462 190 0 50 chr9 98523880 98524001 -43747443 - L1MB5 LINE L1 -247 5927 5813 * 1692 156 46 48 chr9 98523993 98524047 -43747397 - L1MB3 LINE L1 0 6183 6130 2149 85 0 82 chr9 98524047 98524376 -43747068 - AluSx SINE Alu -10 302 1 1692 156 46 48 chr9 98524376 98524694 -43746750 - L1MB3 LINE L1 -53 6130 5812 518 101 0 0 chr9 98524694 98524763 -43746681 + Alu SINE Alu 222 290 -20 943 157 99 5 chr9 98524763 98524954 -43746490 - L1MB3 LINE L1 -707 5473 5265 756 165 0 0 chr9 98524999 98525120 -43746324 - MSTC LTR MaLR -4 424 304 1891 167 3 0 chr9 98525296 98525601 -43745843 - AluJb SINE Alu -6 306 1 2258 92 0 4 chr9 98525960 98526244 -43745200 + AluSp SINE Alu 1 283 -30 199 0 0 0 chr9 98526244 98526266 -43745178 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2125 92 3 63 chr9 98526367 98526682 -43744762 + AluSx SINE Alu 1 296 -16 2345 107 0 0 chr9 98526772 98527070 -43744374 - AluSx SINE Alu -14 298 1 1541 86 45 32 chr9 98527173 98527393 -43744051 + AluSg/x SINE Alu 83 305 -5 834 199 111 82 chr9 98527549 98527651 -43743793 + Charlie1b DNA MER1_type 1 99 -2662 2069 114 45 0 chr9 98527651 98527940 -43743504 + AluSq SINE Alu 1 302 -11 834 199 111 82 chr9 98527940 98528253 -43743191 + Charlie1b DNA MER1_type 99 428 -95 1834 156 7 0 chr9 98528279 98528584 -43742860 - AluJb SINE Alu 0 307 1 2834 220 59 39 chr9 98528608 98529035 -43742409 - L1MD2 LINE L1 -254 6105 5688 2578 65 0 0 chr9 98529035 98529343 -43742101 - AluY SINE Alu -3 308 1 2834 220 59 39 chr9 98529343 98529569 -43741875 - L1MD2 LINE L1 -671 5688 5468 1704 154 6 71 chr9 98529569 98529893 -43741551 - AluJo SINE Alu -9 303 1 2834 220 59 39 chr9 98529893 98530473 -43740971 - L1MD2 LINE L1 -891 5468 4844 1116 182 4 61 chr9 98530471 98530538 -43740906 + L1MC/D LINE L1 5444 5513 -685 * 4528 101 3 20 chr9 98530538 98531060 -43740384 + MER41B LTR ERV1 1 511 -124 2273 98 0 26 chr9 98531060 98531365 -43740079 - AluSg SINE Alu -13 297 1 4528 101 3 20 chr9 98531365 98531488 -43739956 + MER41B LTR ERV1 511 635 0 1116 182 4 61 chr9 98531488 98531671 -43739773 + L1MC/D LINE L1 5513 5686 -512 4588 166 49 15 chr9 98531710 98532499 -43738945 - MER21B LTR ERV1 -47 816 1 3012 128 48 0 chr9 98532499 98532999 -43738445 + L1MB2 LINE L1 5646 6169 -2 561 154 27 9 chr9 98533000 98533110 -43738334 - L1M4 LINE L1 -1293 4853 4742 2321 84 0 3 chr9 98533131 98533416 -43738028 - AluSq SINE Alu -29 284 1 211 204 82 102 chr9 98533548 98533646 -43737798 + L2 LINE L2 3199 3294 -19 711 144 8 0 chr9 98533647 98533765 -43737679 - AluJo/FRAM SINE Alu -15 297 179 448 157 0 0 chr9 98533759 98533829 -43737615 - AluS SINE Alu -221 92 23 * 1762 186 75 57 chr9 98534062 98534595 -43736849 + LTR26E LTR ERV1 3 610 -12 186 279 0 0 chr9 98535705 98535791 -43735653 + GA-rich Low_complexity Low_complexity 3 88 0 2523 77 0 0 chr9 98536107 98536418 -43735026 - AluY SINE Alu 0 311 1 2212 99 10 0 chr9 98536641 98536943 -43734501 + AluY SINE Alu 1 305 -6 1651 98 119 50 chr9 98536957 98537234 -43734210 + AluSg SINE Alu 1 296 -14 644 253 33 0 chr9 98537253 98537403 -43734041 - MER115 DNA AcHobo 0 693 539 1699 140 4 19 chr9 98537438 98537702 -43733742 - AluSx SINE Alu -30 282 23 743 200 8 0 chr9 98537764 98537894 -43733550 + FLAM_A SINE Alu 6 136 -6 488 243 168 5 chr9 98537898 98538028 -43733416 - Zaphod DNA AcHobo -219 3812 3642 2339 86 0 0 chr9 98538028 98538319 -43733125 - AluSg SINE Alu -19 291 1 488 243 168 5 chr9 98538319 98538373 -43733071 - Zaphod DNA AcHobo -389 3642 3598 1772 265 95 19 chr9 98538376 98538968 -43732476 - Zaphod DNA AcHobo -3394 637 1 1109 56 0 0 chr9 98539296 98539422 -43732022 + AluSq/x SINE Alu 1 126 -187 206 295 51 0 chr9 98539488 98539566 -43731878 - L2 LINE L2 -213 3059 2978 265 198 33 11 chr9 98539754 98539845 -43731599 + (TA)n Simple_repeat Simple_repeat 1 93 0 1949 142 10 14 chr9 98540109 98540405 -43731039 + AluSx SINE Alu 1 295 -17 356 232 39 119 chr9 98541178 98541337 -43730107 + L1ME4a LINE L1 5637 5807 -314 2345 96 0 0 chr9 98541337 98541629 -43729815 - AluSg SINE Alu -18 292 1 1555 193 3 17 chr9 98541633 98541928 -43729516 - AluJo SINE Alu -21 291 1 356 232 39 119 chr9 98541928 98542006 -43729438 + L1ME4a LINE L1 5810 5855 -266 1941 126 7 30 chr9 98542006 98542308 -43729136 + AluSx SINE Alu 1 295 -17 356 232 39 119 chr9 98542308 98542349 -43729095 + L1ME4a LINE L1 5855 5898 -223 2294 114 0 0 chr9 98543447 98543745 -43727699 - AluSx SINE Alu -14 298 1 2552 57 0 0 chr9 98544161 98544458 -43726986 - AluY SINE Alu -14 297 1 2164 101 3 10 chr9 98544527 98544824 -43726620 + AluSg SINE Alu 1 295 -15 25 0 0 0 chr9 98545113 98545138 -43726306 + AT_rich Low_complexity Low_complexity 1 25 0 2287 91 0 16 chr9 98545149 98545456 -43725988 + AluSc SINE Alu 1 302 -7 943 94 0 0 chr9 98545480 98545597 -43725847 + AluSq/x SINE Alu 2 118 -195 2109 89 0 67 chr9 98545597 98545910 -43725534 - AluSx SINE Alu -20 292 1 2219 106 0 3 chr9 98546011 98546317 -43725127 - AluSp SINE Alu 0 305 1 1885 167 3 0 chr9 98546676 98546981 -43724463 + AluJb SINE Alu 1 306 -6 725 182 0 0 chr9 98547157 98547278 -43724166 + MSTC LTR MaLR 304 424 -4 943 157 99 5 chr9 98547323 98547514 -43723930 + L1MB3 LINE L1 5265 5473 -707 526 87 0 0 chr9 98547514 98547583 -43723861 - Alu SINE Alu -20 292 224 1724 144 46 54 chr9 98547583 98547901 -43723543 + L1MB3 LINE L1 5812 6128 -55 2136 83 0 83 chr9 98547901 98548225 -43723219 + AluSx SINE Alu 1 297 -15 1724 144 46 54 chr9 98548225 98548274 -43723170 + L1MB3 LINE L1 6128 6176 -7 1750 177 14 28 chr9 98548276 98548637 -43722807 + L1MB5 LINE L1 5813 6168 -6 203 330 75 0 chr9 98549650 98549744 -43721700 + L2 LINE L2 3200 3300 -13 2273 98 10 3 chr9 98549825 98550132 -43721312 + AluSq SINE Alu 1 309 -4 1757 146 48 0 chr9 98550146 98550414 -43721030 + AluJo SINE Alu 1 281 -31 443 294 59 0 chr9 98550539 98550726 -43720718 + MIR SINE MIR 50 247 -15 420 245 29 0 chr9 98551283 98551385 -43720059 - MER81 DNA DNA -6 108 4 2168 140 0 0 chr9 98551729 98552037 -43719407 + AluSx SINE Alu 1 308 -4 218 284 135 0 chr9 98552626 98552700 -43718744 - MIR3 SINE MIR -40 168 85 271 338 150 0 chr9 98553432 98553645 -43717799 + MIR SINE MIR 18 262 0 214 306 83 0 chr9 98553651 98553723 -43717721 - L2 LINE L2 -49 3223 3146 372 208 81 81 chr9 98554230 98554277 -43717167 - Charlie2 DNA MER1_type 0 2862 2816 1561 163 57 18 chr9 98554277 98554394 -43717050 + AluJo SINE Alu 4 115 -197 210 71 0 0 chr9 98554394 98554422 -43717022 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1561 163 57 18 chr9 98554422 98554587 -43716857 + AluJo SINE Alu 115 297 -15 372 208 81 81 chr9 98554587 98554688 -43716756 - Charlie2 DNA MER1_type -45 2817 2714 756 240 71 18 chr9 98554752 98555019 -43716425 - Charlie2 DNA MER1_type -2540 242 4 742 227 62 107 chr9 98555107 98555556 -43715888 + LTR37B LTR ERV1 10 438 -30 2283 101 10 0 chr9 98555556 98555864 -43715580 - AluSx SINE Alu 0 312 2 210 370 26 42 chr9 98556127 98556319 -43715125 - L2 LINE L2 -438 2876 2688 5936 110 20 20 chr9 98556330 98557377 -43714067 - L1PA14 LINE L1 -17 6144 5102 3671 130 85 34 chr9 98557855 98558480 -43712964 - L1PA8A LINE L1 -18 6113 5457 183 129 0 0 chr9 98558655 98558686 -43712758 + (A)n Simple_repeat Simple_repeat 1 31 0 2158 113 14 0 chr9 98558785 98559076 -43712368 + AluSx SINE Alu 2 296 -16 1150 192 12 118 chr9 98559083 98559406 -43712038 + AluJo SINE Alu 6 294 -18 596 108 0 0 chr9 98559851 98559934 -43711510 - AluJ/FLAM SINE Alu -228 84 2 530 220 154 14 chr9 98559934 98560122 -43711322 + L1MC4a LINE L1 6084 6322 -1486 435 185 185 0 chr9 98560157 98560292 -43711152 + L1MC4a LINE L1 6276 6435 -1373 405 0 0 0 chr9 98560297 98560342 -43711102 + (CA)n Simple_repeat Simple_repeat 2 46 0 1187 160 80 9 chr9 98560374 98560587 -43710857 + MER77 LTR ERV1 367 594 -11 2023 152 0 0 chr9 98560722 98561024 -43710420 + AluJo SINE Alu 1 302 -10 2190 114 7 0 chr9 98561318 98561615 -43709829 + AluSx SINE Alu 1 299 -13 253 197 91 0 chr9 98561902 98561968 -43709476 + L1MDa LINE L1 2171 2242 -4298 * 3150 234 116 14 chr9 98561951 98562789 -43708655 + L1MDa LINE L1 1 923 -5617 844 120 0 16 chr9 98562795 98562920 -43708524 + AluSp/q SINE Alu 182 304 -9 298 200 0 0 chr9 98562982 98563032 -43708412 - Alu SINE Alu -6 294 245 5313 149 61 18 chr9 98563132 98564477 -43706967 - L1PBb LINE L1 -4176 2028 616 2042 121 3 0 chr9 98564880 98565162 -43706282 - AluY SINE Alu -28 283 1 345 214 130 10 chr9 98565162 98565350 -43706094 + L1P5 LINE L1 5262 5437 -714 878 277 52 11 chr9 98565357 98565628 -43705816 + ERVL LTR ERVL 4741 5022 -742 843 260 68 36 chr9 98565629 98565994 -43705450 - L1M4 LINE L1 -2374 3772 3396 2439 79 0 0 chr9 98566100 98566392 -43705052 - AluSg SINE Alu -18 292 1 2267 78 3 10 chr9 98566598 98566892 -43704552 + AluSx SINE Alu 1 292 -20 1238 89 0 0 chr9 98566995 98567153 -43704291 + AluSg/x SINE Alu 145 302 -8 1486 79 16 0 chr9 98567425 98567614 -43703830 + AluSp SINE Alu 1 192 -121 331 221 206 66 chr9 98567910 98567985 -43703459 - MLT1L LTR MaLR -208 303 240 1503 198 7 0 chr9 98567985 98568258 -43703186 + AluJb SINE Alu 4 278 -34 331 221 206 66 chr9 98568258 98568457 -43702987 - MLT1L LTR MaLR -271 240 1 1890 79 86 18 chr9 98568724 98569003 -43702441 + AluSp SINE Alu 1 298 -15 245 314 124 7 chr9 98569023 98569160 -43702284 + L1MC/D LINE L1 5675 5827 -1981 2439 90 0 0 chr9 98569160 98569471 -43701973 + AluY SINE Alu 1 311 0 666 246 73 3 chr9 98569477 98569765 -43701679 + L1M4 LINE L1 3047 3354 -2792 2219 106 0 3 chr9 98569953 98570259 -43701185 - AluSp SINE Alu 0 305 1 1782 164 3 13 chr9 98570618 98570917 -43700527 + AluSx SINE Alu 1 296 -16 994 153 0 43 chr9 98570917 98571080 -43700364 + AluSg/x SINE Alu 132 287 -23 4004 152 6 26 chr9 98571549 98572160 -43699284 + L1P LINE L1 4475 5070 -1076 2338 98 0 22 chr9 98572160 98572475 -43698969 - AluSx SINE Alu -2 310 3 4004 152 6 26 chr9 98572475 98572592 -43698852 + L1P LINE L1 5070 5188 -958 225 140 200 0 chr9 98573338 98573388 -43698056 - AluSc SINE Alu -3 296 237 2051 143 52 23 chr9 98573389 98573773 -43697671 + MER61B LTR ERV1 1 395 -30 1567 146 13 4 chr9 98573784 98574023 -43697421 - AluJb SINE Alu -71 241 1 306 153 16 194 chr9 98574024 98574148 -43697296 - L1MC/D LINE L1 -2123 5685 5584 357 211 109 34 chr9 98574157 98574173 -43697271 - L1MA10 LINE L1 -1 6333 6318 1044 181 72 23 chr9 98574173 98574394 -43697050 - L1ME1 LINE L1 -4 6162 5931 2216 74 7 0 chr9 98574494 98574779 -43696665 + PABL_A-int LTR ERV1 4001 4287 -1299 1360 68 0 0 chr9 98574783 98574945 -43696499 + AluSc SINE Alu 132 293 -16 5060 81 0 2 chr9 98574945 98575587 -43695857 + PABL_A-int LTR ERV1 4375 5015 0 1124 117 111 0 chr9 98575587 98575758 -43695686 + PABL_A LTR ERV1 1 190 -470 1224 132 0 0 chr9 98575758 98575932 -43695512 - AluSg/x SINE Alu -10 300 127 2600 65 12 15 chr9 98575935 98576274 -43695170 + PABL_A LTR ERV1 178 515 -145 2270 92 10 0 chr9 98576274 98576568 -43694876 - AluSx SINE Alu -15 297 1 959 202 10 0 chr9 98576626 98576819 -43694625 + L1M4 LINE L1 4147 4341 -1805 1018 199 45 20 chr9 98576935 98576947 -43694497 + L1ME LINE L1 1028 1038 -5504 1964 122 3 14 chr9 98576947 98577234 -43694210 - AluSx SINE Alu -28 284 1 1018 199 45 20 chr9 98577234 98577513 -43693931 + L1ME LINE L1 1038 1326 -5216 1021 185 72 27 chr9 98577513 98577768 -43693676 + MSTD LTR MaLR 91 396 0 1019 231 39 32 chr9 98577773 98578084 -43693360 + L1ME LINE L1 4595 4907 -1737 988 162 23 0 chr9 98578093 98578266 -43693178 + FAM SINE Alu 1 47 -2 1809 212 109 2 chr9 98578272 98578739 -43692705 + L1ME LINE L1 4914 5430 -1214 841 204 30 35 chr9 98578744 98578945 -43692499 + L1ME LINE L1 6070 6269 -395 2080 118 6 34 chr9 98578945 98579266 -43692178 + AluSx SINE Alu 1 312 0 820 247 26 77 chr9 98579367 98579744 -43691700 + L1M4 LINE L1 1862 2219 -4606 691 318 118 11 chr9 98579772 98580146 -43691298 - LTR16B LTR ERVL 0 464 51 572 249 59 18 chr9 98580215 98580384 -43691060 + L1M4 LINE L1 2287 2462 -4363 2209 100 0 31 chr9 98580384 98580703 -43690741 + AluSc SINE Alu 1 309 0 1826 216 121 33 chr9 98580707 98581277 -43690167 - L1M4c LINE L1 -5455 929 310 2601 71 0 0 chr9 98581940 98582250 -43689194 + AluSg SINE Alu 1 310 0 2282 98 14 0 chr9 98582266 98582561 -43688883 + AluSp SINE Alu 1 299 -14 567 189 23 23 chr9 98582951 98583083 -43688361 - AluSc SINE Alu -174 135 4 721 142 74 0 chr9 98583115 98583263 -43688181 - L1MA7 LINE L1 -3 6288 6130 1690 155 7 11 chr9 98583267 98583538 -43687906 - AluSx SINE Alu -12 300 31 687 158 26 9 chr9 98583542 98583656 -43687788 - pTR5 LTR ERV1 -2271 167 52 264 188 0 47 chr9 98583656 98583720 -43687724 - LTR30 LTR ERV1 -98 624 564 699 124 25 196 chr9 98583728 98583990 -43687454 - LTR12 LTR ERV1 -424 1523 100 277 211 0 0 chr9 98583990 98584042 -43687402 - LTR30 LTR ERV1 -670 52 1 * 281 200 114 0 chr9 98584042 98584076 -43687368 - AluS SINE Alu -261 42 1 1457 135 79 85 chr9 98584086 98584426 -43687018 - L1MA7 LINE L1 -172 6119 5782 21 0 0 0 chr9 98584426 98584447 -43686997 + AT_rich Low_complexity Low_complexity 1 21 0 3125 142 24 15 chr9 98584486 98585036 -43686408 - L1MA7 LINE L1 -500 5791 5238 582 138 0 0 chr9 98585036 98585123 -43686321 - Charlie1 DNA MER1_type -602 2159 2073 1141 108 0 13 chr9 98585124 98585281 -43686163 - AluSg/x SINE Alu 0 312 158 1080 155 181 26 chr9 98585281 98585546 -43685898 - Charlie1 DNA MER1_type -685 2076 1771 650 144 99 0 chr9 98585554 98585665 -43685779 + FLAM_C SINE Alu 2 123 -20 2474 208 57 116 chr9 98585769 98586198 -43685246 - L1MDa LINE L1 -4397 2143 1690 453 86 0 0 chr9 98586198 98586256 -43685188 - U6 snRNA snRNA -3 104 47 2199 86 0 0 chr9 98586256 98586524 -43684920 - AluSx SINE Alu -44 268 1 2474 208 57 116 chr9 98586524 98586858 -43684586 - L1MDa LINE L1 -4849 1691 1413 2379 108 0 0 chr9 98586858 98587164 -43684280 - AluSx SINE Alu -6 306 1 2474 208 57 116 chr9 98587164 98587541 -43683903 - L1MDa LINE L1 -5127 1413 1015 419 167 0 0 chr9 98587906 98587978 -43683466 + L1P LINE L1 4322 4393 -1753 4208 149 21 3 chr9 98588105 98588778 -43682666 + MER6 DNA MER2_type 181 865 0 1002 210 68 12 chr9 98588780 98588909 -43682535 - L1ME LINE L1 -346 5820 5700 2164 107 0 20 chr9 98588909 98589207 -43682237 - AluSq SINE Alu -21 292 1 1002 210 68 12 chr9 98589207 98589325 -43682119 - L1ME LINE L1 -466 5700 5559 * 14092 104 1 5 chr9 98589309 98591235 -43680209 + L1P LINE L1 5 1921 -4225 5742 46 20 19 chr9 98591357 98592092 -43679352 + MER4E LTR ERV1 31 766 0 951 108 23 0 chr9 98592299 98592429 -43679015 + AluSg1 SINE Alu 1 133 -176 2117 114 21 3 chr9 98592429 98592719 -43678725 + AluSg SINE Alu 1 295 -15 2117 97 41 10 chr9 98592910 98593200 -43678244 + AluSx SINE Alu 1 299 -13 548 192 40 0 chr9 98593212 98593311 -43678133 + L1M4 LINE L1 4016 4118 -2028 239 152 0 0 chr9 98593311 98593357 -43678087 + L1M4 LINE L1 5181 5226 -920 * 746 250 41 31 chr9 98593351 98593643 -43677801 + L1M4 LINE L1 2475 2769 -3377 1277 160 105 46 chr9 98593643 98593729 -43677715 + MER47B DNA MER2_type 4 84 -2239 1774 172 10 3 chr9 98593729 98594031 -43677413 - AluJo SINE Alu -8 304 1 1277 160 105 46 chr9 98594031 98594182 -43677262 + MER47B DNA MER2_type 84 255 -163 816 73 0 27 chr9 98594180 98594290 -43677154 + MER4E LTR ERV1 556 662 -104 * 1162 133 0 17 chr9 98594289 98594462 -43676982 + MER47B DNA MER2_type 249 418 0 892 203 59 91 chr9 98594462 98594674 -43676770 + L1M4 LINE L1 2784 3001 -3145 2453 140 8 15 chr9 98594674 98595067 -43676377 + MLT1B LTR MaLR 1 390 0 892 203 59 91 chr9 98595067 98595109 -43676335 + L1M4 LINE L1 3001 3043 -3103 2581 61 0 3 chr9 98595109 98595420 -43676024 + AluY SINE Alu 1 310 -1 892 203 59 91 chr9 98595420 98595637 -43675807 + L1M4 LINE L1 3043 3241 -2905 * 2019 178 56 3 chr9 98595608 98596079 -43675365 + L1MB1 LINE L1 4991 5502 -669 258 32 0 0 chr9 98596079 98596110 -43675334 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 2019 178 56 3 chr9 98596110 98596287 -43675157 + L1MB1 LINE L1 5502 5668 -503 1903 179 42 12 chr9 98596290 98596698 -43674746 + L1MB1 LINE L1 5746 6165 -3 533 267 138 36 chr9 98596742 98597247 -43674197 + L1M4 LINE L1 3220 3672 -2474 2374 100 0 0 chr9 98597247 98597548 -43673896 - AluSc SINE Alu -8 301 1 533 267 138 36 chr9 98597548 98597596 -43673848 + L1M4 LINE L1 3672 3714 -2432 1812 178 7 3 chr9 98597596 98597899 -43673545 + AluJb SINE Alu 6 309 -3 533 267 138 36 chr9 98597899 98597911 -43673533 + L1M4 LINE L1 3714 3890 -2256 587 58 84 0 chr9 98597926 98598168 -43673276 + (TA)n Simple_repeat Simple_repeat 1 262 0 1235 210 29 68 chr9 98599227 98599612 -43671832 + MLT1A2 LTR MaLR 5 374 0 325 150 150 30 chr9 98601131 98601231 -43670213 - L1MB8 LINE L1 0 6178 6067 338 200 25 0 chr9 98601267 98601347 -43670097 - L1MB7 LINE L1 -79 6105 6024 2026 108 6 70 chr9 98601347 98601663 -43669781 + AluSx SINE Alu 1 296 -16 1027 146 108 28 chr9 98601708 98601921 -43669523 - MSTB LTR MaLR -32 394 165 1417 138 112 0 chr9 98601922 98602146 -43669298 + AluSx SINE Alu 55 303 -9 1029 200 0 0 chr9 98602147 98602327 -43669117 - MSTB LTR MaLR -245 181 2 292 294 13 52 chr9 98602450 98602603 -43668841 - L1M4 LINE L1 -2691 3455 3309 2300 100 3 0 chr9 98602607 98602908 -43668536 - AluSq SINE Alu -11 302 1 1853 168 0 16 chr9 98602909 98603213 -43668231 - AluJo SINE Alu -13 299 1 2438 73 0 13 chr9 98603508 98603809 -43667635 + AluY SINE Alu 1 297 -14 1687 176 3 13 chr9 98603990 98604291 -43667153 - AluJo SINE Alu -13 299 2 632 248 39 9 chr9 98604333 98604548 -43666896 - L1MA10 LINE L1 0 6333 5945 1214 106 0 0 chr9 98604563 98604724 -43666720 - AluSp SINE Alu -17 296 136 460 113 60 6 chr9 98604837 98605005 -43666439 + (TA)n Simple_repeat Simple_repeat 2 178 0 39 0 0 0 chr9 98605011 98605050 -43666394 + AT_rich Low_complexity Low_complexity 1 39 0 735 228 48 0 chr9 98605050 98605278 -43666166 + L1ME2 LINE L1 3921 4159 -1987 258 270 124 0 chr9 98605323 98605412 -43666032 + L1ME2 LINE L1 5447 5546 -628 5082 55 43 0 chr9 98605413 98606046 -43665398 + PABL_A LTR ERV1 1 660 0 5701 86 4 22 chr9 98606046 98606828 -43664616 + PABL_A-int LTR ERV1 2 769 -4246 2107 108 10 7 chr9 98606832 98607128 -43664316 - AluSg SINE Alu -13 297 1 8520 63 18 12 chr9 98607128 98607466 -43663978 + PABL_A-int LTR ERV1 3256 3591 -1424 2340 93 0 13 chr9 98607466 98607776 -43663668 + AluSp SINE Alu 1 306 -7 8520 63 18 12 chr9 98607776 98608560 -43662884 + PABL_A-int LTR ERV1 3591 4384 -631 1360 68 0 0 chr9 98608560 98608722 -43662722 + AluSc SINE Alu 132 293 -16 5060 81 0 2 chr9 98608722 98609364 -43662080 + PABL_A-int LTR ERV1 4375 5015 0 1169 78 145 0 chr9 98609364 98609530 -43661914 + PABL_A LTR ERV1 1 190 -470 1224 132 0 0 chr9 98609530 98609704 -43661740 - AluSg/x SINE Alu -10 302 129 3798 63 8 18 chr9 98609707 98610041 -43661403 + PABL_A LTR ERV1 178 507 -153 2298 108 0 0 chr9 98610041 98610337 -43661107 - AluSx SINE Alu -15 297 2 3798 63 8 18 chr9 98610337 98610490 -43660954 + PABL_A LTR ERV1 507 660 0 649 194 150 94 chr9 98610490 98610989 -43660455 + L1ME2 LINE L1 5544 6163 -1 2418 252 50 49 chr9 98610995 98611203 -43660241 + L1MEc LINE L1 1644 1850 -4365 2019 139 14 0 chr9 98611203 98611498 -43659946 + AluSx SINE Alu 1 299 -13 2418 252 50 49 chr9 98611498 98611947 -43659497 + L1MEc LINE L1 1850 2297 -3918 891 143 0 0 chr9 98611947 98612080 -43659364 + FLAM_C SINE Alu 1 133 0 2418 252 50 49 chr9 98612080 98612758 -43658686 + L1MEc LINE L1 2297 2938 -3277 281 337 0 0 chr9 98612769 98612864 -43658580 - L2 LINE L2 -1495 1819 1725 2363 87 3 13 chr9 98612877 98613189 -43658255 + AluSc SINE Alu 1 309 0 292 54 0 0 chr9 98613774 98613811 -43657633 - MADE1 DNA Mariner 0 80 44 199 233 50 0 chr9 98613913 98613973 -43657471 - MIR SINE MIR -151 111 49 959 61 0 0 chr9 98614198 98614312 -43657132 + AluSg SINE Alu 1 114 -196 1975 59 62 37 chr9 98614313 98614621 -43656823 + AluSc SINE Alu 1 315 0 1529 79 0 15 chr9 98614621 98614823 -43656621 + AluSg SINE Alu 107 305 -4 207 0 0 0 chr9 98614976 98614999 -43656445 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2328 93 3 0 chr9 98615065 98615367 -43656077 - AluSq SINE Alu -10 303 1 2146 84 0 71 chr9 98615468 98615791 -43655653 - AluSx SINE Alu -12 300 1 288 256 15 15 chr9 98616432 98616569 -43654875 + (CCG)n Simple_repeat Simple_repeat 2 138 0 223 294 41 48 chr9 98617632 98617778 -43653666 + MIR3 SINE MIR 2 146 -62 1473 173 38 57 chr9 98619164 98619482 -43651962 - AluJo SINE Alu 0 312 1 2621 39 0 7 chr9 98619627 98619933 -43651511 + AluY SINE Alu 2 305 -6 2327 68 4 0 chr9 98621098 98621378 -43650066 + AluSx SINE Alu 12 292 -20 1238 89 0 0 chr9 98621481 98621639 -43649805 + AluSg/x SINE Alu 145 302 -8 3110 138 42 20 chr9 98622505 98623048 -43648396 - LTR10A LTR ERV1 -54 555 1 1568 140 175 86 chr9 98623427 98623495 -43647949 - MER4A LTR ERV1 0 664 603 5891 48 29 5 chr9 98623495 98623960 -43647484 - MER4E LTR ERV1 0 766 275 180 0 0 0 chr9 98623960 98623980 -43647464 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 5891 48 29 5 chr9 98623980 98624262 -43647182 - MER4E LTR ERV1 -491 275 1 1568 140 175 86 chr9 98624262 98624564 -43646880 - MER4A LTR ERV1 -61 603 261 671 111 0 10 chr9 98624564 98624663 -43646781 - MER4A LTR ERV1 -566 98 1 21 0 0 0 chr9 98624679 98624700 -43646744 + AT_rich Low_complexity Low_complexity 1 21 0 1095 167 107 4 chr9 98624830 98625063 -43646381 - L1MB8 LINE L1 -16 6162 5906 2176 104 4 4 chr9 98625106 98625407 -43646037 + AluSc SINE Alu 1 301 0 310 231 0 0 chr9 98625430 98625495 -43645949 + L1M4 LINE L1 48 112 -6430 378 171 184 40 chr9 98625604 98625756 -43645688 + L1M4 LINE L1 1131 1304 -5238 2370 98 0 10 chr9 98625764 98626071 -43645373 + AluSx SINE Alu 1 304 -8 2342 105 0 0 chr9 98626120 98626424 -43645020 + AluSx SINE Alu 1 304 -8 2696 207 48 20 chr9 98626489 98627171 -43644273 + L1M4 LINE L1 4248 4948 -1198 1542 218 126 28 chr9 98627188 98627688 -43643756 + L1M4 LINE L1 1362 1910 -4734 1967 214 46 14 chr9 98627691 98627705 -43643739 + MER68 LTR ERV1 123 135 -427 2334 82 3 7 chr9 98627705 98627999 -43643445 + AluSp SINE Alu 1 293 -20 1967 214 46 14 chr9 98627999 98628399 -43643045 + MER68 LTR ERV1 135 550 -12 628 184 0 0 chr9 98628401 98628510 -43642934 + MSTA LTR MaLR 1 109 -319 2224 85 4 0 chr9 98629334 98629641 -43641803 - AluY SINE Alu 0 308 1 1281 158 114 16 chr9 98630593 98630847 -43640597 + MSTA LTR MaLR 129 407 -21 1508 198 52 71 chr9 98630853 98631095 -43640349 + L1M4 LINE L1 2145 2390 -4254 1711 195 3 0 chr9 98631095 98631393 -43640051 + AluJo SINE Alu 1 299 -13 1508 198 52 71 chr9 98631393 98631485 -43639959 + L1M4 LINE L1 2390 2482 -4162 2224 110 0 0 chr9 98631485 98631777 -43639667 + AluSx SINE Alu 1 292 -20 1508 198 52 71 chr9 98631777 98631922 -43639522 + L1M4 LINE L1 2482 2616 -4028 330 256 68 8 chr9 98631894 98632011 -43639433 + L1M4 LINE L1 3121 3244 -3400 * 396 245 27 41 chr9 98632060 98632207 -43639237 + L1M4 LINE L1 4349 4493 -2151 3523 140 62 52 chr9 98632222 98632934 -43638510 - L1MB4 LINE L1 -1 6179 5461 36 23 0 0 chr9 98632947 98632990 -43638454 + AT_rich Low_complexity Low_complexity 1 43 0 2294 121 0 0 chr9 98633022 98633329 -43638115 - AluSg1 SINE Alu -2 307 1 2216 244 56 41 chr9 98633331 98634129 -43637315 + L1M4 LINE L1 4525 5334 -1310 318 50 0 0 chr9 98634585 98634625 -43636819 + (TG)n Simple_repeat Simple_repeat 1 40 0 2161 125 0 13 chr9 98635385 98635698 -43635746 - AluSx SINE Alu -3 309 1 1071 274 54 31 chr9 98636035 98636135 -43635309 - L1ME LINE L1 -418 5744 5648 2327 104 0 0 chr9 98636135 98636432 -43635012 + AluSg SINE Alu 1 297 -13 1071 274 54 31 chr9 98636432 98636809 -43634635 - L1ME LINE L1 -514 5648 5256 2085 132 3 0 chr9 98637028 98637324 -43634120 + AluSx SINE Alu 5 301 -11 3407 229 64 32 chr9 98637387 98638775 -43632669 - L1ME1 LINE L1 -26 6140 4676 1826 109 0 12 chr9 98638775 98639046 -43632398 + AluSg SINE Alu 37 304 0 3407 229 64 32 chr9 98639046 98639459 -43631985 - L1ME1 LINE L1 -1490 4676 4278 2261 94 10 3 chr9 98639860 98640157 -43631287 + AluSx SINE Alu 1 299 -13 974 61 0 0 chr9 98640375 98640490 -43630954 + AluSq/x SINE Alu 2 116 -197 1855 80 34 0 chr9 98640490 98640727 -43630717 + AluSx SINE Alu 61 305 -7 497 159 106 18 chr9 98641427 98641540 -43629904 - LTR58 LTR ERV1 -2 677 555 1693 217 37 18 chr9 98643493 98643876 -43627568 - MLT1B LTR MaLR 0 390 1 3497 200 69 83 chr9 98643886 98644976 -43626468 - MLT1B-int LTR MaLR -20 1351 277 237 33 0 0 chr9 98644980 98645010 -43626434 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 584 187 140 0 chr9 98645018 98645125 -43626319 - FLAM_C SINE Alu -20 123 2 739 162 72 24 chr9 98645125 98645292 -43626152 - MLT1B-int LTR MaLR -1196 175 1 1922 185 36 21 chr9 98645292 98645676 -43625768 - MLT1B LTR MaLR 0 390 1 208 211 77 0 chr9 98646082 98646134 -43625310 + MIR SINE MIR 89 144 -64 2478 38 10 0 chr9 98646141 98646432 -43625012 + AluY SINE Alu 1 294 -17 449 256 36 7 chr9 98646820 98646957 -43624487 + MER20B DNA MER1_type 498 638 -145 1577 170 85 0 chr9 98647299 98647582 -43623862 + AluJb SINE Alu 1 307 -5 1874 121 39 4 chr9 98647804 98648084 -43623360 + AluSx SINE Alu 1 290 -22 858 159 0 0 chr9 98648084 98648211 -43623233 - AluJo/FLAM SINE Alu -180 132 6 2318 74 35 0 chr9 98648705 98648990 -43622454 - AluSc SINE Alu -14 295 1 752 227 40 27 chr9 98649712 98649937 -43621507 + MIR SINE MIR 3 230 -32 361 154 187 33 chr9 98650087 98650178 -43621266 + L2 LINE L2 3168 3272 0 22 56 0 0 chr9 98650449 98650485 -43620959 + AT_rich Low_complexity Low_complexity 1 36 0 1650 178 53 0 chr9 98650650 98650931 -43620513 - AluJb SINE Alu -16 296 1 2360 108 0 0 chr9 98651106 98651413 -43620031 - AluSx SINE Alu -5 307 1 785 285 156 25 chr9 98651620 98651985 -43619459 - MLT1L LTR MaLR -60 555 143 234 59 118 0 chr9 98652088 98652122 -43619322 - Alu SINE Alu -100 202 165 1926 148 3 13 chr9 98652434 98652744 -43618700 + AluSx SINE Alu 2 308 -4 912 217 75 28 chr9 98652751 98652963 -43618481 - MER58A DNA MER1_type -2 222 1 2254 104 3 0 chr9 98652973 98653270 -43618174 - AluSp SINE Alu -15 298 1 918 161 29 0 chr9 98653350 98653524 -43617920 - L1MC3 LINE L1 0 7785 7607 910 152 98 0 chr9 98653527 98653691 -43617753 + AluJb SINE Alu 1 180 -132 6118 155 115 120 chr9 98653742 98654146 -43617298 - L1MC3 LINE L1 -174 7611 7206 244 308 11 11 chr9 98654146 98654237 -43617207 - MLT1L LTR MaLR -442 125 35 6118 155 115 120 chr9 98654237 98654454 -43616990 - L1MC3 LINE L1 -579 7206 6989 4964 71 21 47 chr9 98654454 98655037 -43616407 - PABL_A LTR ERV1 0 660 96 2014 110 0 28 chr9 98655037 98655327 -43616117 - AluSx SINE Alu -30 282 1 4964 71 21 47 chr9 98655327 98655419 -43616025 - PABL_A LTR ERV1 -564 96 3 6118 155 115 120 chr9 98655419 98655926 -43615518 - L1MC3 LINE L1 -796 6989 6481 1759 172 85 85 chr9 98655926 98656021 -43615423 - LOR1b LTR ERV1 -1 460 366 2330 89 6 6 chr9 98656021 98656334 -43615110 - AluSq SINE Alu 0 313 1 1759 172 85 85 chr9 98656334 98656698 -43614746 - LOR1b LTR ERV1 -94 367 1 6118 155 115 120 chr9 98656698 98656738 -43614706 - L1MC3 LINE L1 -1304 6481 6442 359 153 0 0 chr9 98656738 98656797 -43614647 + Charlie1 DNA MER1_type 1890 1948 -813 6118 155 115 120 chr9 98656797 98657248 -43614196 - L1MC3 LINE L1 -1343 6442 5850 284 210 0 0 chr9 98657318 98657380 -43614064 - AluJ/monomer SINE Alu 0 302 241 2069 116 7 10 chr9 98657407 98657708 -43613736 - AluSx SINE Alu -11 301 2 337 183 42 14 chr9 98657711 98657782 -43613662 - L1MC3 LINE L1 -937 5396 5324 503 181 292 21 chr9 98657810 98657954 -43613490 - MLT1L LTR MaLR -72 543 361 4253 77 24 11 chr9 98657955 98658501 -43612943 - MER41A LTR ERV1 -1 553 1 746 189 39 39 chr9 98658584 98658764 -43612680 - L1MB7 LINE L1 -19 6165 5986 * 1092 202 56 42 chr9 98658760 98659116 -43612328 - L1MC3 LINE L1 -808 5338 4978 6616 199 30 50 chr9 98659139 98659392 -43612052 - L1MB3 LINE L1 -52 6131 5875 2155 80 0 4 chr9 98659392 98659667 -43611777 - AluSq SINE Alu -39 274 1 6616 199 30 50 chr9 98659667 98660088 -43611356 - L1MB3 LINE L1 -308 5875 5447 1146 197 119 61 chr9 98660088 98660433 -43611011 + MLT1A1 LTR MaLR 1 365 0 6616 199 30 50 chr9 98660433 98660511 -43610933 - L1MB3 LINE L1 -736 5447 5369 1982 151 0 19 chr9 98660511 98660829 -43610615 - AluSx SINE Alu 0 312 1 6616 199 30 50 chr9 98660829 98661424 -43610020 - L1MB3 LINE L1 -814 5369 4764 661 214 0 53 chr9 98661424 98661444 -43610000 - FLAM_A SINE Alu -175 127 107 2552 52 0 13 chr9 98661444 98661750 -43609694 + AluY SINE Alu 1 302 -9 661 214 0 53 chr9 98661750 98661860 -43609584 - FLAM_A SINE Alu -195 107 4 6616 199 30 50 chr9 98661860 98662298 -43609146 - L1MB3 LINE L1 -1419 4764 4319 1671 188 10 13 chr9 98662298 98662466 -43608978 - AluJo SINE Alu -10 302 134 1975 145 10 0 chr9 98662466 98662769 -43608675 - AluSp SINE Alu -7 306 1 1671 188 10 13 chr9 98662769 98662903 -43608541 - AluJo SINE Alu -178 134 1 6616 199 30 50 chr9 98662903 98663607 -43607837 - L1MB3 LINE L1 -1864 4319 3696 2200 130 0 0 chr9 98663607 98663908 -43607536 - AluSg SINE Alu -9 301 1 6616 199 30 50 chr9 98663908 98663942 -43607502 - L1MB3 LINE L1 -2487 3696 3663 1446 188 113 7 chr9 98663982 98664274 -43607170 + Tigger7 DNA MER2_type 17 339 -2148 328 95 111 0 chr9 98664275 98664335 -43607109 + Tigger7 DNA MER2_type 2340 2406 -81 384 208 26 0 chr9 98664335 98664411 -43607033 + Tigger5 DNA MER2_type 1 78 -2245 403 145 29 0 chr9 98664411 98664480 -43606964 - Tigger5 DNA MER2_type -3 2320 2250 * 453 179 0 75 chr9 98664453 98664559 -43606885 + Tigger5 DNA MER2_type 2226 2323 0 * 471 127 89 13 chr9 98664559 98664636 -43606808 + Tigger7 DNA MER2_type 2409 2491 0 268 203 16 16 chr9 98664636 98664700 -43606744 - L1MB3 LINE L1 -2494 3652 3589 2141 214 117 40 chr9 98664722 98665045 -43606399 - L1MB3 LINE L1 -2635 3511 3214 2259 71 19 32 chr9 98665045 98665356 -43606088 - AluY SINE Alu -4 307 1 1424 184 41 41 chr9 98665359 98665652 -43605792 - AluJb SINE Alu -19 293 1 2141 214 117 40 chr9 98665652 98666258 -43605186 - L1MB3 LINE L1 -2933 3213 2506 1503 201 0 39 chr9 98666301 98666610 -43604834 - AluJo SINE Alu -15 297 1 625 192 108 8 chr9 98666612 98666732 -43604712 - FLAM_A SINE Alu -1 132 1 372 229 85 18 chr9 98666783 98666981 -43604463 + L1MB7 LINE L1 5271 5480 -736 1883 113 60 0 chr9 98666988 98667254 -43604190 - AluSg SINE Alu -27 283 2 21 0 0 0 chr9 98667254 98667275 -43604169 + AT_rich Low_complexity Low_complexity 1 21 0 353 258 23 35 chr9 98667669 98667800 -43603644 - L1MC5 LINE L1 -727 7234 7130 2237 105 0 0 chr9 98667803 98668099 -43603345 - AluSq SINE Alu -17 296 1 766 268 129 21 chr9 98668165 98668505 -43602939 - L1MC5 LINE L1 -2174 5634 5258 292 217 2 0 chr9 98668580 98668639 -43602805 + L1MB7 LINE L1 5593 5653 -468 3121 151 18 34 chr9 98668664 98669220 -43602224 + L1MB7 LINE L1 5622 6168 -16 1691 211 40 40 chr9 98669222 98669649 -43601795 + L1MD3 LINE L1 7563 7989 -6 248 250 50 0 chr9 98669685 98669745 -43601699 + L1MC/D LINE L1 5747 5809 -1999 251 174 18 0 chr9 98669747 98669802 -43601642 + Alu SINE Alu 1 38 -265 686 88 0 0 chr9 98669802 98669893 -43601551 + AluSg/x SINE Alu 218 308 -2 470 281 127 89 chr9 98669898 98670393 -43601051 - MLT1H LTR MaLR -23 526 13 303 283 51 51 chr9 98670413 98670551 -43600893 - L2 LINE L2 -582 2732 2595 227 348 35 43 chr9 98670696 98670811 -43600633 - MIR SINE MIR -55 153 40 2029 118 3 3 chr9 98670880 98671168 -43600276 - AluSg SINE Alu -18 292 5 180 0 0 0 chr9 98671601 98671621 -43599823 + (T)n Simple_repeat Simple_repeat 1 20 0 1906 125 39 32 chr9 98671767 98672079 -43599365 - MER1B DNA MER1_type 0 339 26 24 0 0 0 chr9 98672383 98672407 -43599037 + AT_rich Low_complexity Low_complexity 1 24 0 852 186 0 0 chr9 98672457 98672586 -43598858 + FLAM_A SINE Alu 1 129 -4 2373 94 3 0 chr9 98672797 98673096 -43598348 + AluSp SINE Alu 1 300 -13 224 250 14 69 chr9 98673281 98673353 -43598091 + L2 LINE L2 3246 3313 0 734 176 27 20 chr9 98673422 98673570 -43597874 - L1MB3 LINE L1 -7 6176 6028 2110 113 3 0 chr9 98673571 98673883 -43597561 + AluSp SINE Alu 1 313 0 1782 234 45 108 chr9 98673896 98674099 -43597345 - L1M4 LINE L1 -4840 2015 1801 2235 75 0 7 chr9 98674099 98674379 -43597065 - AluSg SINE Alu -32 278 1 1782 234 45 108 chr9 98674379 98674666 -43596778 - L1M4 LINE L1 -5054 1801 1498 2091 110 24 14 chr9 98674666 98674958 -43596486 - AluSx SINE Alu -17 295 1 1782 234 45 108 chr9 98674958 98674980 -43596464 - L1M4 LINE L1 -5357 1498 1476 933 135 8 8 chr9 98674980 98675113 -43596331 - FLAM_C SINE Alu 0 133 1 1782 234 45 108 chr9 98675113 98675338 -43596106 - L1M4 LINE L1 -5379 1476 1361 1605 186 0 46 chr9 98675338 98675509 -43595935 - AluJo SINE Alu -19 293 141 2291 73 6 35 chr9 98675509 98675825 -43595619 - AluY SINE Alu -4 307 1 1605 186 0 46 chr9 98675825 98675960 -43595484 - AluJo SINE Alu -171 141 1 1782 234 45 108 chr9 98675960 98676286 -43595158 - L1M4 LINE L1 -5494 1361 1016 254 260 43 13 chr9 98676570 98676713 -43594731 - L1M4 LINE L1 -6389 466 110 33 46 0 15 chr9 98676812 98676847 -43594597 + AT_rich Low_complexity Low_complexity 1 63 0 2108 134 0 2 chr9 98676847 98677162 -43594282 + AluSg SINE Alu 1 287 -23 622 239 213 23 chr9 98677467 98677777 -43593667 - L1ME3A LINE L1 -5 6165 5797 1461 254 46 35 chr9 98677808 98678138 -43593306 + MER68 LTR ERV1 1 329 -233 1603 124 162 0 chr9 98678138 98678403 -43593041 - AluSx SINE Alu -4 308 1 1461 254 46 35 chr9 98678403 98678640 -43592804 + MER68 LTR ERV1 329 562 0 691 245 193 27 chr9 98678641 98679082 -43592362 - L1ME3A LINE L1 -416 5768 5255 2226 129 0 6 chr9 98679160 98679471 -43591973 - AluSq SINE Alu -4 309 1 802 274 46 63 chr9 98680243 98680489 -43590955 - L1ME3A LINE L1 -1174 4972 4734 2181 115 0 0 chr9 98680489 98680768 -43590676 - AluSx SINE Alu -33 279 1 802 274 46 63 chr9 98680768 98680952 -43590492 - L1ME3A LINE L1 -1412 4734 4549 1426 150 32 20 chr9 98680961 98681208 -43590236 - AluSx SINE Alu -2 310 61 523 184 57 35 chr9 98681208 98681349 -43590095 - L1MC4a LINE L1 -591 7217 7074 1238 144 94 0 chr9 98681349 98681551 -43589893 + AluSg/x SINE Alu 77 297 -15 290 297 61 27 chr9 98681557 98681705 -43589739 + L1M4 LINE L1 4552 4704 -1442 3340 80 22 2 chr9 98681716 98682180 -43589264 - LTR8 LTR ERV1 -218 473 1 21 0 0 0 chr9 98683052 98683073 -43588371 + AT_rich Low_complexity Low_complexity 1 21 0 897 215 0 28 chr9 98683085 98683262 -43588182 - AluJb SINE Alu -30 282 111 2328 102 0 0 chr9 98684075 98684370 -43587074 + AluSg SINE Alu 1 295 -15 2964 142 45 36 chr9 98684724 98685286 -43586158 - L1MC1 LINE L1 0 6333 5767 24 32 0 0 chr9 98685286 98685317 -43586127 + AT_rich Low_complexity Low_complexity 1 31 0 3110 109 22 75 chr9 98685967 98686131 -43585313 + MER75 DNA T2_type 1 172 -342 2401 94 0 7 chr9 98686131 98686439 -43585005 - AluSc SINE Alu -3 306 1 3110 109 22 75 chr9 98686439 98686460 -43584984 + MER75 DNA T2_type 172 193 -321 2125 136 0 0 chr9 98686460 98686755 -43584689 - AluSx SINE Alu -17 295 1 3110 109 22 75 chr9 98686755 98687111 -43584333 + MER75 DNA T2_type 193 514 0 2343 90 0 3 chr9 98687263 98687562 -43583882 + AluY SINE Alu 1 298 -13 31 44 0 0 chr9 98687631 98687676 -43583768 + AT_rich Low_complexity Low_complexity 1 45 0 2431 91 3 0 chr9 98688447 98688745 -43582699 + AluSp SINE Alu 1 299 -14 1185 83 7 0 chr9 98689618 98689763 -43581681 + AluSp SINE Alu 1 146 -167 2315 104 0 3 chr9 98690543 98690842 -43580602 - AluSg SINE Alu -11 299 2 485 219 148 19 chr9 98690847 98691002 -43580442 + L2 LINE L2 666 840 -2474 412 275 129 16 chr9 98690963 98691156 -43580288 - MIR SINE MIR -47 215 1 * 675 286 109 8 chr9 98691166 98691432 -43580012 + L2 LINE L2 858 1150 -2164 988 251 138 36 chr9 98691440 98691882 -43579562 + L2 LINE L2 1348 1834 -1480 2546 68 13 0 chr9 98691887 98692196 -43579248 - AluSq SINE Alu 0 313 1 234 292 21 0 chr9 98692197 98692293 -43579151 + L2 LINE L2 1985 2082 -1232 359 235 193 27 chr9 98692293 98692480 -43578964 + MER2 DNA MER2_type 128 345 0 251 338 75 19 chr9 98692509 98692669 -43578775 + MLT1K LTR MaLR 215 383 -205 461 208 16 32 chr9 98692803 98692928 -43578516 + LTR9 LTR ERV1 490 612 0 220 340 49 39 chr9 98693074 98693277 -43578167 - L2 LINE L2 -1 3312 3108 2143 114 0 41 chr9 98694158 98694475 -43576969 - AluSq SINE Alu -9 304 1 2263 119 0 0 chr9 98695263 98695566 -43575878 + AluSq SINE Alu 1 303 -10 1604 252 53 49 chr9 98695591 98695978 -43575466 + L1MC4a LINE L1 5279 5663 -2145 1841 142 7 4 chr9 98695978 98696253 -43575191 + AluSq SINE Alu 1 276 -37 1979 84 88 0 chr9 98696254 98696528 -43574916 + AluSp SINE Alu 1 298 -15 1604 252 53 49 chr9 98696528 98696685 -43574759 + L1MC4a LINE L1 5662 5827 -1981 2158 122 3 0 chr9 98696685 98696979 -43574465 + AluSg SINE Alu 1 295 -15 764 242 73 12 chr9 98696987 98697317 -43574127 - L1M4 LINE L1 -2969 3177 2828 1834 204 68 47 chr9 98698248 98698764 -43572680 + L1MB2 LINE L1 5569 6095 -76 209 131 66 0 chr9 98698807 98698868 -43572576 + (TA)n Simple_repeat Simple_repeat 2 66 0 266 79 63 0 chr9 98698892 98698955 -43572489 + (TA)n Simple_repeat Simple_repeat 2 68 0 1363 202 38 40 chr9 98698955 98699270 -43572174 + L1MB8 LINE L1 5709 6024 -154 2260 119 7 0 chr9 98699270 98699572 -43571872 - AluSx SINE Alu -8 304 1 1363 202 38 40 chr9 98699572 98699652 -43571792 + L1MB8 LINE L1 6024 6103 -75 314 140 150 30 chr9 98699688 98699788 -43571656 + L1MB8 LINE L1 6067 6178 0 1295 210 29 68 chr9 98701310 98701695 -43569749 - MLT1A2 LTR MaLR 0 374 5 200 299 0 39 chr9 98703690 98703767 -43567677 + C-rich Low_complexity Low_complexity 3 76 0 266 193 28 14 chr9 98705308 98705530 -43565914 + (CA)n Simple_repeat Simple_repeat 1 225 0 974 232 90 34 chr9 98707971 98708325 -43563119 + MLT1A2 LTR MaLR 1 374 0 211 355 90 0 chr9 98709016 98709171 -43562273 - MIR SINE MIR -2 260 92 2232 101 0 10 chr9 98709384 98709681 -43561763 + AluSg SINE Alu 5 298 -12 2408 87 0 3 chr9 98709774 98710086 -43561358 + AluY SINE Alu 1 311 0 2285 101 14 0 chr9 98710103 98710399 -43561045 + AluSp SINE Alu 1 300 -13 2275 99 26 0 chr9 98711864 98712168 -43559276 + AluSx SINE Alu 1 312 0 2542 74 0 3 chr9 98712498 98712808 -43558636 - AluSg SINE Alu -1 309 1 21 0 0 0 chr9 98715093 98715114 -43556330 + AT_rich Low_complexity Low_complexity 1 21 0 576 254 5 16 chr9 98715250 98715439 -43556005 + MER53 DNA DNA 3 189 0 2147 110 31 0 chr9 98717409 98717701 -43553743 - AluSx SINE Alu -11 301 1 437 319 58 14 chr9 98718193 98718469 -43552975 - MER63C DNA MER1_type -399 531 244 613 198 57 0 chr9 98718518 98718675 -43552769 - MER63C DNA MER1_type -682 248 83 2055 139 20 0 chr9 98718921 98719222 -43552222 + AluSx SINE Alu 1 307 -5 2445 54 0 13 chr9 98720268 98720566 -43550878 - AluY SINE Alu -16 295 2 2282 98 0 16 chr9 98720590 98720897 -43550547 - AluSc SINE Alu -7 302 1 24 0 0 0 chr9 98720908 98720932 -43550512 + AT_rich Low_complexity Low_complexity 1 24 0 2228 100 3 3 chr9 98721221 98721511 -43549933 - AluSg SINE Alu -20 290 1 2221 117 3 3 chr9 98722758 98723058 -43548386 + AluSq SINE Alu 1 300 -13 222 37 0 0 chr9 98723058 98723085 -43548359 + (TG)n Simple_repeat Simple_repeat 1 27 0 2548 55 19 10 chr9 98723246 98723554 -43547890 + AluY SINE Alu 1 311 0 2201 79 54 0 chr9 98723723 98724003 -43547441 + AluSp SINE Alu 1 295 -18 474 284 142 30 chr9 98724036 98724600 -43546844 + L1M4 LINE L1 4405 5031 -1115 2242 122 0 0 chr9 98724864 98725168 -43546276 + AluSq SINE Alu 1 304 -9 1667 252 53 42 chr9 98725192 98725575 -43545869 + L1MC4a LINE L1 5279 5656 -2152 1841 142 7 4 chr9 98725575 98725850 -43545594 + AluSq SINE Alu 1 276 -37 1990 80 88 0 chr9 98725851 98726125 -43545319 + AluSp SINE Alu 1 298 -15 1667 252 53 42 chr9 98726125 98726282 -43545162 + L1MC4a LINE L1 5655 5827 -1981 2242 116 3 0 chr9 98726282 98726583 -43544861 + AluSg SINE Alu 1 302 -8 871 164 0 20 chr9 98726627 98726773 -43544671 - AluJb SINE Alu -15 297 155 1998 75 12 4 chr9 98726779 98727033 -43544411 - AluSp SINE Alu -57 256 1 22 0 0 0 chr9 98727041 98727063 -43544381 + AT_rich Low_complexity Low_complexity 1 22 0 942 277 74 18 chr9 98727069 98727155 -43544289 - L1M4 LINE L1 -2778 3368 3288 2456 74 0 3 chr9 98727155 98727454 -43543990 - AluY SINE Alu -7 304 7 942 277 74 18 chr9 98727454 98727542 -43543902 - L1M4 LINE L1 -2858 3288 3206 2043 125 38 0 chr9 98727542 98727831 -43543613 + AluSx SINE Alu 1 300 -12 942 277 74 18 chr9 98727831 98728168 -43543276 - L1M4 LINE L1 -2940 3206 2827 2297 171 50 87 chr9 98729098 98729684 -43541760 + L1MB2 LINE L1 5569 6132 -39 794 227 8 38 chr9 98729700 98729857 -43541587 + L1M4 LINE L1 5047 5207 -939 2192 93 7 0 chr9 98729857 98730147 -43541297 + AluSg SINE Alu 1 292 -18 2313 93 0 20 chr9 98730149 98730450 -43540994 + AluY SINE Alu 1 295 -16 794 227 8 38 chr9 98730450 98730527 -43540917 + L1M4 LINE L1 5208 5277 -869 36 53 0 0 chr9 98730527 98730584 -43540860 + AT_rich Low_complexity Low_complexity 1 57 0 438 15 132 0 chr9 98730597 98730733 -43540711 + (TA)n Simple_repeat Simple_repeat 1 154 0 2256 108 0 3 chr9 98731626 98731921 -43539523 + AluSg SINE Alu 1 294 -16 192 208 117 65 chr9 98732012 98732089 -43539355 - MIR SINE MIR -103 105 25 4050 155 79 66 chr9 98732181 98733106 -43538338 - L1MB8 LINE L1 0 6178 5224 314 259 17 17 chr9 98734008 98734124 -43537320 + CT-rich Low_complexity Low_complexity 2 117 0 1132 45 37 0 chr9 98734289 98734423 -43537021 - MER85 DNA T2_type 0 139 1 2733 13 0 19 chr9 98734784 98735097 -43536347 - AluY SINE Alu -4 307 1 3396 200 54 8 chr9 98735097 98735836 -43535608 - L1MB8 LINE L1 -2177 3969 3197 544 139 0 0 chr9 98735837 98735909 -43535535 + AluS SINE Alu 2 73 -240 411 70 0 0 chr9 98735987 98736044 -43535400 - MLT2D LTR ERVL 0 414 366 1623 106 0 5 chr9 98736113 98736331 -43535113 + AluSq SINE Alu 86 302 -11 1004 190 88 5 chr9 98736718 98736923 -43534521 - LOR1a LTR ERV1 -8 489 268 488 214 182 0 chr9 98736931 98737090 -43534354 - LOR1b LTR ERV1 -273 188 1 1844 156 10 10 chr9 98737774 98738069 -43533375 + AluSx SINE Alu 1 295 -17 235 346 15 0 chr9 98739220 98739350 -43532094 + GA-rich Low_complexity Low_complexity 1 132 0 536 230 57 68 chr9 98740497 98740867 -43530577 - HSREP522 Satellite telomeric -137 367 2 372 207 106 65 chr9 98741465 98741682 -43529762 + HSREP522 Satellite telomeric 16 241 -263 8219 193 43 12 chr9 98741693 98742952 -43528492 - L1 LINE L1 -1998 5567 4197 2326 99 0 3 chr9 98742952 98743254 -43528190 - AluY SINE Alu -10 301 1 8219 193 43 12 chr9 98743254 98744263 -43527181 - L1 LINE L1 -3368 4197 3221 895 163 22 130 chr9 98744238 98744515 -43526929 - L1MB8 LINE L1 -3147 4418 4172 * 859 69 0 0 chr9 98744528 98744630 -43526814 - AluY SINE Alu -209 102 1 651 183 51 0 chr9 98744637 98744774 -43526670 - L1MB8 LINE L1 -3330 2816 2673 1292 189 24 39 chr9 98744786 98745119 -43526325 - L1MB8 LINE L1 -3640 2506 2179 1394 176 43 43 chr9 98745635 98745937 -43525507 + AluJo SINE Alu 2 303 -9 2059 127 0 3 chr9 98745980 98746285 -43525159 + AluSq SINE Alu 1 304 0 2207 122 3 0 chr9 98746322 98746626 -43524818 + AluY SINE Alu 1 305 -6 818 186 62 62 chr9 98747043 98747366 -43524078 + L1MC5 LINE L1 7507 7829 -132 441 228 0 0 chr9 98747375 98747454 -43523990 + Tigger1 DNA MER2_type 18 96 -2322 6586 134 25 30 chr9 98747455 98748531 -43522913 + MER11C LTR ERVK 1 1071 0 638 147 0 0 chr9 98748537 98748632 -43522812 - AluJb SINE Alu -10 302 208 901 160 28 0 chr9 98748643 98748787 -43522657 - Tigger1 DNA MER2_type -1935 483 336 791 212 36 68 chr9 98748943 98749193 -43522251 - L1M4 LINE L1 -1836 4310 4069 224 204 56 0 chr9 98749492 98749546 -43521898 + CT-rich Low_complexity Low_complexity 4 60 0 181 377 53 0 chr9 98749912 98750026 -43521418 + MIR SINE MIR 128 247 -15 2353 106 0 0 chr9 98751045 98751347 -43520097 - AluSq SINE Alu -11 302 1 3509 128 95 17 chr9 98751364 98751964 -43519480 - L1MC1 LINE L1 0 6333 5687 25 31 0 0 chr9 98751971 98752003 -43519441 + AT_rich Low_complexity Low_complexity 1 32 0 1895 172 0 3 chr9 98752500 98752797 -43518647 - AluSx SINE Alu -13 299 4 4133 152 79 64 chr9 98753177 98754101 -43517343 + L1MB8 LINE L1 5224 6178 0 192 208 117 65 chr9 98754193 98754270 -43517174 + MIR SINE MIR 25 105 -103 2243 108 0 3 chr9 98754361 98754656 -43516788 - AluSg SINE Alu -16 294 1 465 206 3 16 chr9 98754760 98754870 -43516574 - MER5B DNA MER1_type -12 166 69 244 114 0 0 chr9 98754921 98754956 -43516488 - MER5B DNA MER1_type -143 35 1 21 57 0 0 chr9 98755260 98755295 -43516149 + AT_rich Low_complexity Low_complexity 1 35 0 295 252 50 88 chr9 98755440 98755599 -43515845 - L1MD2 LINE L1 -28 6331 6179 24 67 0 0 chr9 98755653 98755698 -43515746 + AT_rich Low_complexity Low_complexity 1 45 0 2233 111 0 0 chr9 98756182 98756470 -43514974 + AluSx SINE Alu 1 288 -24 339 254 0 73 chr9 98756471 98756581 -43514863 - L1MC4 LINE L1 -1328 6714 6613 220 102 61 0 chr9 98756582 98756631 -43514813 + (TA)n Simple_repeat Simple_repeat 2 53 0 2337 104 0 0 chr9 98757016 98757315 -43514129 - AluSg SINE Alu -11 299 1 2249 102 7 0 chr9 98758236 98758531 -43512913 - AluSg SINE Alu -13 297 1 979 156 16 42 chr9 98759025 98759217 -43512227 - AluJb SINE Alu -6 306 120 921 132 22 0 chr9 98759246 98759382 -43512062 - FLAM_C SINE Alu -4 139 1 2500 55 7 13 chr9 98760168 98760476 -43510968 - AluY SINE Alu -5 306 1 1570 200 10 23 chr9 98760792 98761097 -43510347 + AluJb SINE Alu 1 301 -11 563 272 136 42 chr9 98761668 98762028 -43509416 - L1ME LINE L1 -459 5662 5269 845 197 0 0 chr9 98762166 98762298 -43509146 - FLAM_A SINE Alu 0 133 2 302 215 0 0 chr9 98762415 98762494 -43508950 - L1ME LINE L1 -3653 2493 2415 949 181 0 30 chr9 98762496 98762662 -43508782 - AluJb SINE Alu -23 289 129 2168 127 13 0 chr9 98762664 98762971 -43508473 - AluSx SINE Alu -1 311 1 236 292 21 0 chr9 98762972 98763068 -43508376 + L2 LINE L2 1985 2082 -1232 502 241 187 21 chr9 98763068 98763255 -43508189 + MER2 DNA MER2_type 128 345 0 330 331 75 19 chr9 98763284 98763444 -43508000 + MLT1K LTR MaLR 215 383 -205 495 210 24 35 chr9 98763555 98763703 -43507741 + LTR9 LTR ERV1 490 612 0 267 316 38 38 chr9 98763852 98763985 -43507459 - L2 LINE L2 -4 3268 3136 25 31 0 0 chr9 98764935 98764967 -43506477 + AT_rich Low_complexity Low_complexity 1 32 0 2133 91 0 32 chr9 98764973 98765258 -43506186 - AluSq SINE Alu -37 276 1 1947 116 53 0 chr9 98766043 98766327 -43505117 - AluSx SINE Alu -13 299 1 429 320 155 16 chr9 98766872 98767171 -43504273 - L1M4 LINE L1 -1908 4238 3871 2146 55 0 0 chr9 98767171 98767424 -43504020 - AluY SINE Alu -9 302 50 429 320 155 16 chr9 98767424 98767512 -43503932 - L1M4 LINE L1 -2275 3871 3797 2418 119 45 13 chr9 98768198 98768586 -43502858 - MSTA LTR MaLR -2 426 30 245 241 90 83 chr9 98768863 98768996 -43502448 + L1MC4 LINE L1 7771 7904 -138 2181 87 14 7 chr9 98769589 98769877 -43501567 + AluSc SINE Alu 1 290 -19 207 276 51 10 chr9 98770175 98770273 -43501171 + MIR SINE MIR 100 201 -61 185 167 0 0 chr9 98770899 98770929 -43500515 + L2 LINE L2 3268 3297 -16 864 199 16 43 chr9 98772827 98773013 -43498431 - AluJ SINE Alu -12 300 120 915 138 23 0 chr9 98773048 98773178 -43498266 - AluJ SINE Alu -169 133 1 271 266 0 46 chr9 98774541 98774650 -43496794 + CT-rich Low_complexity Low_complexity 1 104 0 1536 167 30 4 chr9 98774653 98774923 -43496521 - AluJb SINE Alu -33 279 3 474 236 85 0 chr9 98778313 98778419 -43493025 + MIR SINE MIR 75 189 -73 712 191 15 0 chr9 98778436 98778568 -43492876 + AluJo SINE Alu 2 134 -178 983 166 13 0 chr9 98778582 98778739 -43492705 - FRAM SINE Alu -24 152 1 1739 202 0 0 chr9 98778749 98779056 -43492388 - AluJo SINE Alu -5 307 1 21 100 0 0 chr9 98779136 98779206 -43492238 + AT_rich Low_complexity Low_complexity 1 70 0 1570 174 73 31 chr9 98779665 98779782 -43491662 - MLT2D LTR ERVL 0 464 353 1864 165 3 13 chr9 98779782 98780097 -43491347 - AluJb SINE Alu 0 312 1 1570 174 73 31 chr9 98780097 98780408 -43491036 - MLT2D LTR ERVL -111 353 35 1631 106 0 5 chr9 98780555 98780773 -43490671 - AluSq SINE Alu -11 302 86 410 70 0 0 chr9 98780842 98780899 -43490545 + MLT2C1 LTR ERVL 349 397 0 487 153 0 0 chr9 98780977 98781049 -43490395 - AluS SINE Alu -240 73 2 3101 193 54 3 chr9 98781050 98781693 -43489751 + L1 LINE L1 3197 3872 -2274 966 262 95 76 chr9 98781975 98782567 -43488877 - L1ME3 LINE L1 -151 6013 5434 1741 188 0 0 chr9 98782567 98782874 -43488570 - AluSx SINE Alu 0 307 1 966 262 95 76 chr9 98782874 98783001 -43488443 - L1ME3 LINE L1 -730 5434 5311 1778 169 24 3 chr9 98783001 98783291 -43488153 - AluJb SINE Alu -16 296 1 966 262 95 76 chr9 98783291 98783440 -43488004 - L1ME3 LINE L1 -853 5311 5115 1912 125 14 14 chr9 98783591 98783872 -43487572 + AluY SINE Alu 1 281 -30 2069 105 0 21 chr9 98784530 98784814 -43486630 + AluSq SINE Alu 1 278 -35 2179 107 0 3 chr9 98784814 98785103 -43486341 + AluSx SINE Alu 1 288 -24 1843 160 0 3 chr9 98785358 98785645 -43485799 - AluSx SINE Alu -26 286 1 244 194 48 29 chr9 98785696 98785799 -43485645 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 2297 71 43 0 chr9 98786452 98786734 -43484710 + AluY SINE Alu 1 294 -17 1374 122 10 10 chr9 98787091 98787296 -43484148 - AluSq SINE Alu -108 205 1 200 35 35 0 chr9 98787451 98787480 -43483964 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2073 100 24 3 chr9 98787534 98787824 -43483620 - AluSc SINE Alu -13 296 1 555 216 0 0 chr9 98788415 98788517 -43482927 - FLAM_C SINE Alu -40 103 2 1267 182 53 92 chr9 98788525 98788882 -43482562 - L1M3 LINE L1 -361 5822 5480 1867 147 3 26 chr9 98789043 98789350 -43482094 + AluSg SINE Alu 1 300 -10 2133 119 3 3 chr9 98789497 98789799 -43481645 - AluSx SINE Alu -10 302 1 2242 248 82 53 chr9 98790354 98790642 -43480802 - MER21B LTR ERV1 -57 806 528 1787 178 3 3 chr9 98790642 98790935 -43480509 - AluJo SINE Alu -14 298 6 2242 248 82 53 chr9 98790935 98791013 -43480431 - MER21B LTR ERV1 -335 528 454 1789 169 16 16 chr9 98791013 98791321 -43480123 + AluJb SINE Alu 5 312 0 2242 248 82 53 chr9 98791321 98791719 -43479725 - MER21B LTR ERV1 -409 454 19 1364 219 0 62 chr9 98791813 98792137 -43479307 - AluJo SINE Alu -8 304 1 591 189 31 16 chr9 98792139 98792286 -43479158 - FLAM_C SINE Alu 0 143 9 1528 186 22 58 chr9 98792289 98792650 -43478794 + MLT1D LTR MaLR 150 497 -8 1508 217 10 0 chr9 98792659 98792959 -43478485 + AluJo SINE Alu 1 303 -9 1024 264 96 16 chr9 98792970 98793487 -43477957 - L2 LINE L2 -218 3095 2541 762 186 0 0 chr9 98793577 98793701 -43477743 + FLAM_C SINE Alu 1 124 -9 24 0 0 0 chr9 98793701 98793725 -43477719 + AT_rich Low_complexity Low_complexity 1 24 0 1102 249 7 30 chr9 98793725 98794022 -43477422 + AluJo SINE Alu 3 292 -10 321 178 28 93 chr9 98794180 98794287 -43477157 + LTR37A LTR ERV1 241 340 -86 1852 149 0 36 chr9 98794787 98795095 -43476349 - AluJo SINE Alu -5 307 11 2053 204 53 75 chr9 98795117 98795188 -43476256 - L1MB8 LINE L1 0 6178 6107 1428 222 0 13 chr9 98795188 98795499 -43475945 + AluJb SINE Alu 1 307 -5 2053 204 53 75 chr9 98795499 98796065 -43475379 - L1MB8 LINE L1 -71 6107 5555 351 238 12 0 chr9 98796340 98796420 -43475024 + HsTC2 DNA Tc2 477 557 -1341 396 188 62 9 chr9 98796574 98796686 -43474758 - L1MDa LINE L1 -3472 3068 2951 * 918 207 35 0 chr9 98796682 98796856 -43474588 - L1MDa LINE L1 -6342 198 19 1665 156 35 7 chr9 98796903 98797186 -43474258 + AluJb SINE Alu 1 291 -21 328 288 126 0 chr9 98797386 98797497 -43473947 + MER5B DNA MER1_type 2 126 -52 1821 136 7 27 chr9 98797531 98797825 -43473619 + AluY SINE Alu 1 288 -23 203 0 37 0 chr9 98797830 98797857 -43473587 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 465 202 153 8 chr9 98798144 98798268 -43473176 - MER58B DNA MER1_type -15 326 185 913 179 81 0 chr9 98798272 98798445 -43472999 + AluJo SINE Alu 108 294 -18 262 271 17 0 chr9 98798447 98798506 -43472938 - MER58B DNA MER1_type -279 62 3 738 194 61 12 chr9 98798874 98799039 -43472405 - MER3 DNA MER1_type -5 204 32 23 68 0 0 chr9 98799767 98799811 -43471633 + AT_rich Low_complexity Low_complexity 1 44 0 2268 94 0 19 chr9 98800173 98800481 -43470963 - AluSx SINE Alu -10 302 1 799 273 98 49 chr9 98800481 98801137 -43470307 - L1MEc LINE L1 -4070 2326 1639 2933 10 0 0 chr9 98801253 98801564 -43469880 - AluYa5 SINE Alu 0 311 1 24 0 0 0 chr9 98801710 98801734 -43469710 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr9 98801902 98801933 -43469511 + AT_rich Low_complexity Low_complexity 1 31 0 3199 93 2 30 chr9 98801940 98802142 -43469302 + L1PA10 LINE L1 5710 5916 -252 2986 6 0 0 chr9 98802142 98802457 -43468987 - AluYb8 SINE Alu -3 315 1 3199 93 2 30 chr9 98802457 98802726 -43468718 + L1PA10 LINE L1 5916 6168 0 363 268 0 0 chr9 98802738 98802820 -43468624 + MLT1D LTR MaLR 275 356 -149 318 26 0 0 chr9 98803339 98803378 -43468066 + (TG)n Simple_repeat Simple_repeat 2 40 0 313 87 0 0 chr9 98803451 98803497 -43467947 - Alu SINE Alu -256 46 1 1523 148 4 0 chr9 98803777 98804007 -43467437 + AluJo SINE Alu 1 231 -81 473 229 14 129 chr9 98804047 98804257 -43467187 + AluJb SINE Alu 57 242 -70 796 191 68 0 chr9 98804379 98804541 -43466903 - AluJo SINE Alu -19 293 121 366 156 0 0 chr9 98805148 98805212 -43466232 - FRAM SINE Alu -71 95 32 216 318 59 0 chr9 98805717 98805802 -43465642 + L2 LINE L2 2685 2774 -540 312 325 42 39 chr9 98805883 98806169 -43465275 + L2 LINE L2 2952 3238 -75 1819 162 31 0 chr9 98806260 98806550 -43464894 + AluSx SINE Alu 1 299 -13 2155 128 3 3 chr9 98806667 98806965 -43464479 + AluSx SINE Alu 1 298 -14 2300 117 0 0 chr9 98807029 98807338 -43464106 + AluY SINE Alu 1 309 -2 2324 68 31 10 chr9 98808078 98808370 -43463074 + AluY SINE Alu 1 298 -13 886 276 77 26 chr9 98808400 98808537 -43462907 + L1ME1 LINE L1 5657 5786 -380 2201 54 58 14 chr9 98808537 98808814 -43462630 - AluY SINE Alu -22 289 1 886 276 77 26 chr9 98808814 98809067 -43462377 + L1ME1 LINE L1 5786 6067 -99 3204 186 37 21 chr9 98809090 98809758 -43461686 - L1MB3 LINE L1 -142 6041 5363 2125 133 3 0 chr9 98809774 98810076 -43461368 - AluSx SINE Alu -9 303 1 230 264 42 0 chr9 98811110 98811182 -43460262 + MLT1K LTR MaLR 509 583 -5 203 246 46 0 chr9 98811185 98811250 -43460194 - MIR SINE MIR -101 161 94 360 204 14 102 chr9 98811264 98811411 -43460033 - MLT1I LTR MaLR -4 405 272 255 176 68 81 chr9 98811443 98811517 -43459927 - MLT1I LTR MaLR -349 156 84 2522 52 7 13 chr9 98811519 98811828 -43459616 - AluY SINE Alu 0 311 5 2456 93 0 0 chr9 98812429 98812739 -43458705 + AluSg SINE Alu 1 310 0 587 247 26 0 chr9 98813000 98813154 -43458290 + MIR SINE MIR 38 195 -67 2183 105 3 0 chr9 98814592 98814877 -43456567 + AluSx SINE Alu 1 286 -26 2143 118 0 3 chr9 98819010 98819299 -43452145 + AluSx SINE Alu 1 288 -24 900 185 26 5 chr9 98819528 98819757 -43451687 - L1MC/D LINE L1 -745 5401 5199 716 161 0 17 chr9 98819760 98819878 -43451566 - FLAM_A SINE Alu -6 136 21 865 183 24 194 chr9 98819933 98820162 -43451282 - L1MC/D LINE L1 -944 5202 5036 239 204 0 0 chr9 98820162 98820206 -43451238 - MER72 LTR ERV1 -93 629 586 865 183 24 194 chr9 98820206 98820387 -43451057 - L1MC/D LINE L1 -1110 5036 4826 320 318 112 18 chr9 98820496 98820719 -43450725 - L2 LINE L2 -667 2647 2404 1916 97 12 0 chr9 98821246 98821504 -43449940 + PABL_A LTR ERV1 1 261 -399 689 59 0 12 chr9 98821501 98821586 -43449858 + PABL_A LTR ERV1 577 660 0 * 189 176 176 0 chr9 98821597 98821648 -43449796 + L2 LINE L2 1848 1907 -1407 1421 197 10 30 chr9 98821649 98821953 -43449491 + AluJo SINE Alu 1 298 -14 652 133 0 0 chr9 98822191 98822281 -43449163 + AluJ/FLAM SINE Alu 2 91 -221 3721 51 60 4 chr9 98822306 98822792 -43448652 + LTR10D LTR ERV1 1 513 0 1719 160 34 7 chr9 98822856 98823150 -43448294 + AluJb SINE Alu 1 302 -10 273 239 45 0 chr9 98823967 98824034 -43447410 - L3 LINE CR1 -123 1454 1385 225 0 0 0 chr9 98824237 98824262 -43447182 + (A)n Simple_repeat Simple_repeat 1 25 0 1632 181 3 23 chr9 98825591 98825894 -43445550 + AluJb SINE Alu 1 297 -15 318 180 0 0 chr9 98825903 98825964 -43445480 + A-rich Low_complexity Low_complexity 5 65 0 985 214 0 0 chr9 98825978 98826151 -43445293 + FAM SINE Alu 1 173 -2 23 68 0 0 chr9 98826574 98826618 -43444826 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr9 98826868 98826891 -43444553 + AT_rich Low_complexity Low_complexity 1 23 0 657 176 119 0 chr9 98827055 98827231 -43444213 - L1MA7 LINE L1 0 6291 6095 1121 55 0 0 chr9 98827231 98827359 -43444085 - AluY SINE Alu -183 128 1 1240 176 78 39 chr9 98827360 98827666 -43443778 - L1MA7 LINE L1 -184 6107 5790 1965 179 74 3 chr9 98827669 98828048 -43443396 - Tigger2a DNA MER2_type -28 406 1 3092 173 34 36 chr9 98828048 98828365 -43443079 - L1MA7 LINE L1 -504 5787 5471 779 113 0 0 chr9 98828365 98828471 -43442973 - U6 snRNA snRNA -1 106 1 3092 173 34 36 chr9 98828471 98829293 -43442151 - L1MA7 LINE L1 -820 5471 4657 6245 40 9 45 chr9 98829317 98830125 -43441319 - L1PA5 LINE L1 -2 6152 5374 3007 166 53 58 chr9 98830111 98830822 -43440622 - L1MA7 LINE L1 -1459 4687 3980 * 2437 58 0 0 chr9 98830848 98831143 -43440301 - AluY SINE Alu -16 295 1 1419 210 75 62 chr9 98831144 98831249 -43440195 + L1M4 LINE L1 3196 3298 -2848 728 115 0 0 chr9 98831249 98831362 -43440082 + L1MA1 LINE L1 6190 6302 0 1419 210 75 62 chr9 98831362 98831752 -43439692 + L1M4 LINE L1 3298 3697 -2449 1626 242 51 11 chr9 98831764 98832310 -43439134 + L1M4 LINE L1 2367 2934 -3212 21 0 0 31 chr9 98832427 98832441 -43439003 + AT_rich Low_complexity Low_complexity 1 14 -17 1827 170 0 0 chr9 98832441 98832735 -43438709 - AluJb SINE Alu -18 294 1 21 0 0 31 chr9 98832735 98832752 -43438692 + AT_rich Low_complexity Low_complexity 14 31 0 2188 78 0 27 chr9 98832803 98833099 -43438345 - AluY SINE Alu -23 288 1 2058 88 3 3 chr9 98833172 98833476 -43437968 - AluSx SINE Alu 0 304 1 1482 226 16 49 chr9 98833565 98834012 -43437432 + L1M4 LINE L1 3669 4100 -2046 7402 50 2 1 chr9 98834012 98835535 -43435909 + L1PA5 LINE L1 4628 6154 0 2367 258 51 18 chr9 98835556 98836373 -43435071 + L1M4 LINE L1 4528 5371 -775 324 293 26 95 chr9 98836485 98836586 -43434858 - L1MCa LINE L1 -4799 1627 1521 2671 20 0 0 chr9 98836586 98836889 -43434555 - AluYa5 SINE Alu -8 303 1 324 293 26 95 chr9 98836889 98837019 -43434425 - L1MCa LINE L1 -4905 1521 1412 24 0 0 0 chr9 98837035 98837059 -43434385 + AT_rich Low_complexity Low_complexity 1 24 0 317 281 116 30 chr9 98837080 98837244 -43434200 - L1MCa LINE L1 -5159 1448 1271 3292 80 20 0 chr9 98837260 98837709 -43433735 + L1PA10 LINE L1 5710 6167 -1 344 263 0 40 chr9 98837714 98837813 -43433631 + MLT1D LTR MaLR 262 356 -149 6961 1 35 0 chr9 98837941 98838458 -43432986 + L1PA7 LINE L1 4457 4952 -1202 6961 52 20 1 chr9 98838458 98839418 -43432026 + L1PA7 LINE L1 5163 6138 -16 6961 1 35 0 chr9 98839418 98839432 -43432012 + L1PA7 LINE L1 4952 6138 -16 1959 128 0 0 chr9 98839996 98840284 -43431160 - AluSx SINE Alu -24 288 1 830 218 58 0 chr9 98840574 98840762 -43430682 - MER63 DNA MER1_type 0 1060 862 238 200 0 0 chr9 98840826 98840871 -43430573 - MER63 DNA MER1_type -339 723 679 830 168 50 24 chr9 98840878 98841052 -43430392 + MER31A LTR ERV1 2 195 -271 569 187 82 0 chr9 98841047 98841181 -43430263 + MER63 DNA MER1_type 861 1005 -55 * 1360 176 137 16 chr9 98841177 98841483 -43429961 + MER31A LTR ERV1 143 485 0 1898 105 48 3 chr9 98841681 98841976 -43429468 - AluSp SINE Alu -5 308 1 1914 116 0 21 chr9 98841976 98842260 -43429184 - AluSq SINE Alu -34 279 1 1815 118 14 18 chr9 98842920 98843200 -43428244 - AluY SINE Alu -32 279 1 959 263 95 78 chr9 98843351 98843500 -43427944 + L1ME3 LINE L1 5115 5260 -904 1641 172 24 3 chr9 98843500 98843790 -43427654 + AluJb SINE Alu 1 296 -16 959 263 95 78 chr9 98843790 98843917 -43427527 + L1ME3 LINE L1 5260 5383 -781 1589 195 0 0 chr9 98843917 98844229 -43427215 + AluSx SINE Alu 1 312 0 959 263 95 78 chr9 98844229 98844821 -43426623 + L1ME3 LINE L1 5383 6013 -151 239 172 50 40 chr9 98844982 98845081 -43426363 + (TTATA)n Simple_repeat Simple_repeat 5 104 0 325 302 79 16 chr9 98846471 98846597 -43424847 + MER112 DNA MER1_type 18 151 -109 2405 66 0 0 chr9 98846706 98847010 -43424434 - AluY SINE Alu -7 304 1 367 273 38 93 chr9 98847253 98847319 -43424125 + MER5A DNA MER1_type 12 80 -109 1369 171 40 40 chr9 98847319 98847618 -43423826 + AluJb SINE Alu 1 299 -13 367 273 38 93 chr9 98847618 98847734 -43423710 + MER5A DNA MER1_type 80 184 -5 459 122 33 0 chr9 98848079 98848169 -43423275 + CT-rich Low_complexity Low_complexity 1 93 0 921 286 72 13 chr9 98848274 98848592 -43422852 - MER58B DNA MER1_type 0 341 5 1587 133 28 77 chr9 98849555 98849878 -43421566 + AluJo SINE Alu 1 307 -5 762 248 61 0 chr9 98849956 98850154 -43421290 - MER63A DNA MER1_type 0 210 1 951 237 32 29 chr9 98850427 98850705 -43420739 - MER41-int LTR ERV1 -3592 2354 2076 1079 45 37 0 chr9 98851771 98851905 -43419539 + MER85 DNA T2_type 1 139 0 314 259 17 17 chr9 98852070 98852186 -43419258 + GA-rich Low_complexity Low_complexity 2 117 0 195 264 336 14 chr9 98854495 98854635 -43416809 - MIR SINE MIR -75 187 3 2167 88 7 3 chr9 98854902 98855210 -43416234 + AluY SINE Alu 1 309 -2 831 203 171 20 chr9 98855380 98855631 -43415813 + MER5C DNA MER1_type 35 323 -1 1489 70 9 9 chr9 98855658 98855871 -43415573 - AluY SINE Alu -6 305 93 1797 258 130 22 chr9 98856009 98856979 -43414465 - L2 LINE L2 -4 3309 2232 393 250 81 15 chr9 98857001 98857137 -43414307 - L2 LINE L2 -1268 2046 1902 2248 92 0 16 chr9 98857386 98857702 -43413742 + AluSp SINE Alu 1 311 -2 1796 99 12 0 chr9 98857708 98857961 -43413483 + AluSg SINE Alu 42 297 -13 244 203 228 38 chr9 98858069 98858148 -43413296 - L3 LINE CR1 -10 1567 1474 * 447 364 40 0 chr9 98858142 98858367 -43413077 + MIR SINE MIR 13 246 -16 200 279 70 0 chr9 98858377 98858463 -43412981 - L3 LINE CR1 -88 1489 1398 898 275 13 4 chr9 98858474 98858710 -43412734 + MIR SINE MIR 9 246 -16 1494 194 7 7 chr9 98859292 98859602 -43411842 + AluJb SINE Alu 1 310 -2 300 297 58 22 chr9 98859698 98859836 -43411608 - MIR SINE MIR -3 259 117 2393 87 0 0 chr9 98859851 98860161 -43411283 - AluY SINE Alu -1 310 1 1007 111 0 0 chr9 98860162 98860297 -43411147 - AluSp SINE Alu -178 135 1 2235 62 7 0 chr9 98861263 98861554 -43409890 - AluY SINE Alu -18 293 1 2145 121 0 0 chr9 98862390 98862696 -43408748 - AluSq SINE Alu -7 306 1 2315 72 0 10 chr9 98862708 98863013 -43408431 - AluY SINE Alu -9 302 1 732 273 55 44 chr9 98863053 98863346 -43408098 + L2 LINE L2 3016 3311 -2 2154 110 7 0 chr9 98863783 98864093 -43407351 + AluSx SINE Alu 1 312 0 1879 99 0 0 chr9 98864358 98864620 -43406824 + AluY SINE Alu 1 262 -49 307 198 0 31 chr9 98864631 98864727 -43406717 + CT-rich Low_complexity Low_complexity 3 95 0 2363 55 3 13 chr9 98864730 98865039 -43406405 - AluY SINE Alu -5 306 1 1997 115 10 10 chr9 98865040 98865352 -43406092 - AluJo SINE Alu 0 312 1 234 282 244 64 chr9 98865419 98865653 -43405791 - L3 LINE CR1 -198 1379 1104 2037 87 0 14 chr9 98866001 98866288 -43405156 + AluSq SINE Alu 28 310 -3 2624 75 0 0 chr9 98866973 98867304 -43404140 + L1PA7 LINE L1 5816 6146 -8 269 165 24 102 chr9 98867305 98867318 -43404126 + MER49-int LTR ERV1 1884 1896 -6224 2334 70 7 0 chr9 98867318 98867616 -43403828 + AluY SINE Alu 1 300 -11 269 165 24 102 chr9 98867616 98867663 -43403781 + MER49-int LTR ERV1 1896 1945 -6175 2403 72 0 0 chr9 98867663 98867967 -43403477 + AluY SINE Alu 1 304 -7 269 165 24 102 chr9 98867967 98868032 -43403412 + MER49-int LTR ERV1 1945 2000 -6120 747 226 116 5 chr9 98868237 98868427 -43403017 + MIR SINE MIR 9 219 -43 295 327 44 26 chr9 98868747 98868860 -43402584 + L2 LINE L2 3189 3303 -10 203 311 0 16 chr9 98870634 98870695 -43400749 + (CA)n Simple_repeat Simple_repeat 1 60 0 920 231 52 66 chr9 98870695 98871190 -43400254 - L1M4 LINE L1 -1682 4464 3966 929 27 0 9 chr9 98871316 98871428 -43400016 + L1PA4 LINE L1 6038 6148 -7 7005 104 39 9 chr9 98871432 98871593 -43399851 + Tigger1 DNA MER2_type 475 630 -1788 1966 146 3 0 chr9 98871593 98871902 -43399542 + AluSx SINE Alu 1 310 -2 7005 104 39 9 chr9 98871902 98872784 -43398660 + Tigger1 DNA MER2_type 630 1550 -868 2183 101 0 10 chr9 98872784 98873092 -43398352 + AluY SINE Alu 1 305 -6 2170 231 88 36 chr9 98873093 98873900 -43397544 + MER49-int LTR ERV1 2477 2664 -2272 1777 146 49 0 chr9 98873900 98874188 -43397256 - AluSx SINE Alu -10 302 1 2170 231 88 36 chr9 98874188 98874342 -43397102 + MER49-int LTR ERV1 2664 2809 -2127 777 189 0 92 chr9 98874469 98874654 -43396790 + MER49-int LTR ERV1 3786 3953 -4167 579 241 102 12 chr9 98874855 98875021 -43396423 + MER49-int LTR ERV1 5984 6164 -594 * 1597 177 19 9 chr9 98874998 98875355 -43396089 + MER49-int LTR ERV1 6384 7097 0 1673 169 82 23 chr9 98875355 98876010 -43395434 + MER49 LTR ERV1 1 732 -191 348 24 0 0 chr9 98876010 98876051 -43395393 + (TG)n Simple_repeat Simple_repeat 2 42 0 857 179 32 0 chr9 98876055 98876211 -43395233 - AluSg/x SINE Alu -18 292 132 2388 63 0 3 chr9 98876211 98876511 -43394933 - AluY SINE Alu -12 299 1 2305 89 3 3 chr9 98876514 98876818 -43394626 - AluSq SINE Alu -9 304 1 1935 105 10 27 chr9 98877273 98877569 -43393875 - AluSx SINE Alu -20 292 2 684 233 56 56 chr9 98877698 98877930 -43393514 + MLT1E2 LTR MaLR 4 235 -391 211 289 19 107 chr9 98878965 98879124 -43392320 - L2 LINE L2 0 3313 3169 1491 184 48 0 chr9 98879276 98879569 -43391875 - AluJo SINE Alu 0 312 6 785 115 98 0 chr9 98879571 98879693 -43391751 - AluJo SINE Alu -174 138 5 2059 87 3 28 chr9 98879757 98880081 -43391363 + AluSx SINE Alu 1 317 0 188 296 0 0 chr9 98880239 98880283 -43391161 + L2 LINE L2 3210 3253 -19 2395 67 0 10 chr9 98881502 98881815 -43389629 - AluY SINE Alu -1 310 1 1595 159 0 8 chr9 98882019 98882283 -43389161 + AluJb SINE Alu 16 277 -35 283 217 29 0 chr9 98882333 98882402 -43389042 + L2 LINE L2 2634 2704 -610 318 285 126 42 chr9 98882545 98882759 -43388685 + L2 LINE L2 2913 3144 -169 257 224 0 35 chr9 98883273 98883331 -43388113 + MER5B DNA MER1_type 123 178 0 3939 143 101 99 chr9 98884106 98885300 -43386144 - pTR5 LTR ERV1 -64 2295 281 324 306 64 23 chr9 98885364 98885537 -43385907 - MIR SINE MIR -17 245 66 1664 109 0 4 chr9 98886195 98886433 -43385011 - AluSc SINE Alu -5 304 68 22 0 0 0 chr9 98886520 98886542 -43384902 + GC_rich Low_complexity Low_complexity 1 22 0 869 143 8 8 chr9 98886683 98886816 -43384628 - FLAM_C SINE Alu 0 133 1 814 232 13 9 chr9 98886816 98887040 -43384404 - L1M4b LINE L1 -5302 1557 1333 1015 173 0 0 chr9 98887041 98887203 -43384241 - FRAM SINE Alu -17 159 1 2301 79 7 0 chr9 98887212 98887516 -43383928 - AluY SINE Alu -5 306 1 3958 156 54 68 chr9 98887517 98888501 -43382943 - MER83A-int LTR ERV1 -6365 1755 786 * 4078 181 45 48 chr9 98887724 98888711 -43382733 - LTR57-int LTR ERVL -3752 1591 608 3189 162 21 65 chr9 98888628 98889247 -43382197 - MER83A-int LTR ERV1 -2345 1940 1349 * 3503 130 53 10 chr9 98889856 98890440 -43381004 - LTR38B LTR ERV1 0 610 2 2043 237 51 63 chr9 98890441 98891200 -43380244 + L1ME3 LINE L1 5411 6160 -2 619 268 119 28 chr9 98891741 98892103 -43379341 + L1MC/D LINE L1 5255 5649 -2159 1927 230 68 10 chr9 98892167 98892772 -43378672 + L1M4 LINE L1 3329 3968 -2178 1260 160 32 28 chr9 98892773 98893023 -43378421 + AluJo SINE Alu 46 296 -16 1493 220 61 48 chr9 98893031 98893526 -43377918 + L1M4 LINE L1 3964 4464 -1682 268 228 18 0 chr9 98893530 98893587 -43377857 + (TG)n Simple_repeat Simple_repeat 1 58 0 297 303 0 0 chr9 98893613 98893702 -43377742 - L2 LINE L2 -48 3224 3136 354 302 43 9 chr9 98895358 98895474 -43375970 - L2 LINE L2 -5 3308 3189 759 230 112 5 chr9 98895792 98895988 -43375456 - MIR SINE MIR -43 219 3 782 253 141 10 chr9 98897251 98897563 -43373881 - MER90 LTR ERV1 -14 600 248 2390 70 0 0 chr9 98898145 98898443 -43373001 - AluY SINE Alu -13 298 1 2545 122 54 23 chr9 98899394 98899609 -43371835 - HSMAR2 DNA Mariner -1 1301 1094 3773 96 18 0 chr9 98899609 98900111 -43371333 - MER9 LTR ERVK 0 511 1 2545 122 54 23 chr9 98900111 98900337 -43371107 - HSMAR2 DNA Mariner -208 1094 846 186 118 0 0 chr9 98900461 98900495 -43370949 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 377 44 59 0 chr9 98900499 98900567 -43370877 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 2065 98 20 3 chr9 98900903 98901198 -43370246 - AluSx SINE Alu -12 300 1 1498 139 0 0 chr9 98901203 98901469 -43369975 - L1MA5A LINE L1 0 6297 6032 3549 120 6 7 chr9 98901469 98902006 -43369438 - L1PA13 LINE L1 0 6163 5617 2538 172 37 13 chr9 98902012 98902548 -43368896 - L1P LINE L1 -3364 2782 2234 2482 52 3 0 chr9 98903954 98904259 -43367185 - AluY SINE Alu -4 307 2 195 100 0 0 chr9 98904523 98904553 -43366891 + (TG)n Simple_repeat Simple_repeat 1 30 0 2426 68 0 10 chr9 98904625 98904933 -43366511 + AluY SINE Alu 1 305 -6 27 49 0 0 chr9 98905479 98905520 -43365924 + AT_rich Low_complexity Low_complexity 1 41 0 210 88 88 0 chr9 98905523 98905591 -43365853 + (TA)n Simple_repeat Simple_repeat 1 74 0 350 288 75 20 chr9 98905978 98906124 -43365320 - MER91A DNA MER1_type -8 188 35 1532 175 21 11 chr9 98906148 98906428 -43365016 - AluJo SINE Alu -17 295 13 2394 60 3 0 chr9 98907693 98907992 -43363452 + AluY SINE Alu 1 300 -11 438 324 39 29 chr9 98909407 98909614 -43361830 + MIR SINE MIR 9 217 -45 2594 45 0 0 chr9 98909640 98909948 -43361496 - AluY SINE Alu -3 308 1 276 307 130 25 chr9 98910058 98910296 -43361148 - MLT1L LTR MaLR 0 615 353 27 29 0 0 chr9 98910611 98910645 -43360799 + AT_rich Low_complexity Low_complexity 1 34 0 195 264 336 14 chr9 98911026 98911166 -43360278 - MIR SINE MIR -75 187 3 220 212 0 91 chr9 98911393 98911433 -43360011 + MIR3 SINE MIR 110 143 -65 1929 125 10 7 chr9 98911433 98911730 -43359714 + AluJb SINE Alu 1 298 -14 220 212 0 91 chr9 98911730 98911755 -43359689 + MIR3 SINE MIR 143 169 -39 2176 117 0 0 chr9 98911794 98912103 -43359341 + AluY SINE Alu 1 309 -2 2285 69 30 10 chr9 98912843 98913146 -43358298 + AluY SINE Alu 1 309 -2 3423 91 48 11 chr9 98913147 98913672 -43357772 + Tigger1 DNA MER2_type 1542 2085 -333 3004 249 103 40 chr9 98913677 98914881 -43356563 - L1MDb LINE L1 -2654 3886 2759 1995 135 0 0 chr9 98914881 98915170 -43356274 - AluSg SINE Alu -21 289 1 3004 249 103 40 chr9 98915170 98915462 -43355982 - L1MDb LINE L1 -3781 2759 2487 1018 253 119 32 chr9 98915462 98915924 -43355520 - MLT1D LTR MaLR -3 502 1 3004 249 103 40 chr9 98915924 98916803 -43354641 - L1MDb LINE L1 -4053 2487 1665 2127 100 0 20 chr9 98916803 98917103 -43354341 - AluSc SINE Alu -14 295 2 3004 249 103 40 chr9 98917103 98918100 -43353344 - L1MDb LINE L1 -4875 1665 280 289 197 49 16 chr9 98918100 98918161 -43353283 - LTR52-int LTR ERVL -316 3240 3178 1231 177 0 46 chr9 98918161 98918466 -43352978 + AluSq SINE Alu 1 291 -22 846 205 98 52 chr9 98919572 98919722 -43351722 - L1M4 LINE L1 -3269 2877 2735 1760 149 16 7 chr9 98919722 98920030 -43351414 - AluSx SINE Alu -1 311 1 846 205 98 52 chr9 98920030 98920186 -43351258 - L1M4 LINE L1 -3411 2735 2557 * 876 218 35 0 chr9 98920182 98920356 -43351088 - L1MDb LINE L1 -6342 198 19 1371 184 35 7 chr9 98920403 98920686 -43350758 + AluJb SINE Alu 1 291 -21 370 288 126 0 chr9 98920886 98920997 -43350447 + MER5B DNA MER1_type 2 126 -52 2372 70 3 0 chr9 98921031 98921330 -43350114 + AluY SINE Alu 1 300 -11 316 313 43 68 chr9 98921786 98921949 -43349495 + L1 LINE L1 3705 3863 -2283 3202 193 32 63 chr9 98922204 98923101 -43348343 + L1 LINE L1 4453 5321 -825 200 254 42 0 chr9 98923760 98923831 -43347613 + CT-rich Low_complexity Low_complexity 3 76 0 192 111 0 0 chr9 98924475 98924511 -43346933 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 599 234 88 79 chr9 98925020 98925678 -43345766 + HSREP522 Satellite telomeric 1 663 -328 314 259 17 17 chr9 98926884 98927000 -43344444 + CT-rich Low_complexity Low_complexity 2 117 0 1079 45 37 0 chr9 98927165 98927299 -43344145 - MER85 DNA T2_type 0 139 1 2797 0 0 0 chr9 98927660 98927967 -43343477 - AluYa5 SINE Alu -4 307 1 205 303 79 0 chr9 98928606 98928682 -43342762 + MIR SINE MIR 73 154 -108 1398 194 26 7 chr9 98928682 98928955 -43342489 + LOR1-int LTR ERV1 2077 2354 -3592 1004 159 47 22 chr9 98928954 98929186 -43342258 + LOR1-int LTR ERV1 1838 1989 -4907 * 2214 182 48 4 chr9 98929177 98929639 -43341805 + LOR1-int LTR ERV1 2740 3221 -2725 23 33 0 0 chr9 98929976 98930006 -43341438 + AT_rich Low_complexity Low_complexity 1 30 0 2404 196 22 27 chr9 98930546 98931148 -43340296 + L1MB8 LINE L1 4132 4730 -1416 441 188 31 0 chr9 98931148 98931244 -43340200 + L1P LINE L1 4856 4954 -1192 * 1819 215 82 42 chr9 98931243 98931815 -43339629 + L1MB8 LINE L1 5584 6178 0 2562 127 58 41 chr9 98931856 98932319 -43339125 - L1PB1 LINE L1 -3 6148 5678 1063 272 79 49 chr9 98932331 98932567 -43338877 - L1M4 LINE L1 -743 5403 5176 1856 145 3 0 chr9 98932567 98932856 -43338588 + AluSx SINE Alu 2 291 -21 1063 272 79 49 chr9 98932856 98933292 -43338152 - L1M4 LINE L1 -970 5176 4711 211 252 210 42 chr9 98933582 98933725 -43337719 - MIR3 SINE MIR -19 189 23 180 240 120 27 chr9 98934014 98934089 -43337355 - L2 LINE L2 -908 2406 2325 1376 165 129 62 chr9 98934433 98934852 -43336592 - LTR7 LTR ERV1 -2 448 2 2556 86 48 0 chr9 98934853 98935225 -43336219 - HERVH LTR ERV1 0 7713 7324 1492 106 18 5 chr9 98935225 98935442 -43336002 - HERVH LTR ERV1 -1894 5819 5600 4253 146 23 5 chr9 98935443 98936093 -43335351 - HERVH LTR ERV1 -2564 5149 4488 3389 113 4 4 chr9 98936095 98936584 -43334860 - HERVH LTR ERV1 -3720 3993 3505 867 138 41 0 chr9 98936588 98936733 -43334711 - HERVH LTR ERV1 -4423 3290 3140 * 20283 97 30 6 chr9 98936727 98939643 -43331801 - HERVH LTR ERV1 -4726 2987 1 1326 167 116 74 chr9 98939645 98940075 -43331369 - LTR7 LTR ERV1 -2 448 1 1097 128 15 5 chr9 98940324 98940520 -43330924 + AluY SINE Alu 112 309 -2 383 61 0 0 chr9 98940964 98941013 -43330431 + AluSg/x SINE Alu 86 134 -166 1932 132 34 0 chr9 98941013 98941309 -43330135 + AluSx SINE Alu 1 306 -6 420 229 46 18 chr9 98941433 98941542 -43329902 + MIR3 SINE MIR 94 205 -3 229 282 74 81 chr9 98941959 98942352 -43329092 + L1ME4a LINE L1 5715 6104 -17 1799 159 7 0 chr9 98942396 98942697 -43328747 + AluJb SINE Alu 1 303 -9 2126 107 3 3 chr9 98942890 98943188 -43328256 - AluSx SINE Alu -14 298 1 1865 133 27 7 chr9 98943598 98943891 -43327553 - AluSq SINE Alu -14 299 1 209 296 68 11 chr9 98944306 98944394 -43327050 + MIR3 SINE MIR 116 208 0 215 246 35 0 chr9 98944644 98944701 -43326743 - L2 LINE L2 0 3272 3214 2243 73 0 58 chr9 98945141 98945471 -43325973 + AluSq SINE Alu 1 311 -2 347 273 189 0 chr9 98945614 98945746 -43325698 + MER5A DNA MER1_type 32 188 -1 314 328 90 0 chr9 98947154 98947276 -43324168 - MIR SINE MIR -97 165 33 1797 258 130 22 chr9 98947624 98948594 -43322850 - L2 LINE L2 -4 3309 2232 393 250 81 15 chr9 98948616 98948752 -43322692 - L2 LINE L2 -1268 2046 1902 2248 92 0 16 chr9 98949001 98949317 -43322127 + AluSp SINE Alu 1 311 -2 1796 99 12 0 chr9 98949323 98949576 -43321868 + AluSg SINE Alu 42 297 -13 244 203 228 38 chr9 98949684 98949763 -43321681 - L3 LINE CR1 -10 1567 1474 * 447 364 40 0 chr9 98949757 98949982 -43321462 + MIR SINE MIR 13 246 -16 200 279 70 0 chr9 98949992 98950078 -43321366 - L3 LINE CR1 -88 1489 1398 898 275 13 4 chr9 98950089 98950325 -43321119 + MIR SINE MIR 9 246 -16 1494 194 7 7 chr9 98950907 98951217 -43320227 + AluJb SINE Alu 1 310 -2 300 297 58 22 chr9 98951313 98951451 -43319993 - MIR SINE MIR -3 259 117 2393 87 0 0 chr9 98951466 98951776 -43319668 - AluY SINE Alu -1 310 1 1056 89 0 0 chr9 98951777 98951912 -43319532 - AluSp SINE Alu -178 135 1 272 311 9 38 chr9 98951916 98952022 -43319422 - MIR SINE MIR -152 110 8 751 283 145 43 chr9 98952140 98952648 -43318796 - L2 LINE L2 0 3313 2712 2363 64 0 3 chr9 98952648 98952943 -43318501 + AluY SINE Alu 1 294 -17 751 283 145 43 chr9 98952943 98953043 -43318401 - L2 LINE L2 -601 2712 2624 486 323 12 6 chr9 98953026 98953193 -43318251 - L3 LINE CR1 -268 1309 1142 * 990 275 14 11 chr9 98953354 98953634 -43317810 - LTR16A LTR ERVL -110 340 60 431 230 144 23 chr9 98953726 98953900 -43317544 - MLT1K LTR MaLR -161 427 233 2283 75 7 0 chr9 98954123 98954430 -43317014 + AluY SINE Alu 1 309 -2 831 203 171 20 chr9 98954600 98954851 -43316593 + MER5C DNA MER1_type 35 323 -1 2437 66 0 0 chr9 98954878 98955183 -43316261 - AluY SINE Alu -6 305 1 526 305 90 5 chr9 98956302 98956502 -43314942 - MIR SINE MIR -44 218 2 444 318 80 0 chr9 98956521 98956672 -43314772 + MIR3 SINE MIR 31 193 -15 727 321 21 16 chr9 98956687 98956930 -43314514 - MIR SINE MIR 0 262 19 1765 83 4 24 chr9 98957307 98957559 -43313885 - AluSg SINE Alu -62 248 2 34 0 0 0 chr9 98957666 98957700 -43313744 + AT_rich Low_complexity Low_complexity 1 34 0 1414 164 4 40 chr9 98957919 98957979 -43313465 + AluJo SINE Alu 1 62 -250 1329 178 111 72 chr9 98957979 98958412 -43313032 + LTR7 LTR ERV1 1 450 0 1414 164 4 40 chr9 98958412 98958626 -43312818 + AluJo SINE Alu 62 265 -47 286 255 83 51 chr9 98958758 98958974 -43312470 + L2 LINE L2 1527 1749 -1565 2262 67 0 42 chr9 98959016 98959328 -43312116 + AluY SINE Alu 1 299 -12 1133 91 0 0 chr9 98959334 98959488 -43311956 + AluSg/x SINE Alu 147 300 -10 929 289 166 73 chr9 98959505 98960496 -43310948 + L2 LINE L2 1817 2899 -415 334 313 23 31 chr9 98960715 98960843 -43310601 + L2 LINE L2 3180 3306 -7 336 304 88 32 chr9 98961063 98961188 -43310256 - MIR SINE MIR -6 256 125 438 272 28 50 chr9 98961188 98961368 -43310076 - LTR33 LTR ERVL -3 518 343 502 250 164 8 chr9 98961401 98961645 -43309799 - LTR33 LTR ERVL -239 282 1 2212 113 0 0 chr9 98962467 98962778 -43308666 - AluSp SINE Alu -2 311 1 818 235 85 64 chr9 98963108 98963547 -43307897 + MLT1C LTR MaLR 1 467 0 201 289 0 0 chr9 98963557 98963602 -43307842 - MIR3 SINE MIR -43 165 121 197 184 0 0 chr9 98963570 98963608 -43307836 - L2 LINE L2 -1602 1712 1675 * 1866 170 12 76 chr9 98963696 98964119 -43307325 - MER57A LTR ERV1 0 403 8 495 275 15 0 chr9 98965091 98965222 -43306222 - L1MA10 LINE L1 0 6334 6202 1265 184 51 19 chr9 98965222 98965408 -43306036 + LTR49 LTR ERV1 1 180 -415 2045 98 0 70 chr9 98965408 98965735 -43305709 - AluSx SINE Alu -8 304 1 1265 184 51 19 chr9 98965735 98965975 -43305469 + LTR49 LTR ERV1 180 595 0 2121 226 37 34 chr9 98965982 98966575 -43304869 - L1ME1 LINE L1 -123 6043 5449 833 168 34 7 chr9 98966576 98966863 -43304581 + MER57A LTR ERV1 6 403 0 450 0 0 0 chr9 98966888 98966938 -43304506 + (TG)n Simple_repeat Simple_repeat 1 50 0 694 207 74 0 chr9 98966938 98967073 -43304371 - FRAM SINE Alu -31 145 1 1395 161 19 92 chr9 98967074 98967216 -43304228 - L1ME1 LINE L1 -744 5402 5251 2456 51 0 0 chr9 98967216 98967546 -43303898 + AluY SINE Alu 1 330 0 1395 161 19 92 chr9 98967546 98967697 -43303747 - L1ME1 LINE L1 -895 5251 5180 1696 189 0 3 chr9 98967697 98968010 -43303434 - AluJb SINE Alu 0 312 1 1395 161 19 92 chr9 98968010 98968137 -43303307 - L1ME1 LINE L1 -966 5180 5045 982 203 23 17 chr9 98968137 98968430 -43303014 - LTR48B LTR ERV1 0 644 304 1363 185 39 8 chr9 98968480 98968739 -43302705 - AluJo SINE Alu -37 275 9 468 175 10 48 chr9 98968739 98968842 -43302602 - LTR29 LTR ERV1 -387 235 137 332 236 67 67 chr9 98968829 98968948 -43302496 - MER34 LTR ERV1 -457 85 1 * 2180 68 0 4 chr9 98968965 98969298 -43302146 - AluY SINE Alu 0 333 2 1621 181 111 18 chr9 98969298 98969684 -43301760 - L1ME1 LINE L1 -1108 5038 4617 679 172 28 26 chr9 98969800 98970053 -43301391 - LTR48B LTR ERV1 -68 576 223 717 104 31 0 chr9 98970075 98970171 -43301273 - FRAM SINE Alu -35 141 43 192 248 50 99 chr9 98970309 98970410 -43301034 + MER5B DNA MER1_type 2 97 -81 1093 123 0 50 chr9 98970607 98970786 -43300658 + LTR49 LTR ERV1 1 170 -425 835 236 142 26 chr9 98970786 98971096 -43300348 + LTR48 LTR ERV1 349 694 -93 315 313 0 20 chr9 98971383 98971482 -43299962 + HERV16 LTR ERVL 1346 1442 -3554 456 237 0 53 chr9 98971548 98971679 -43299765 - MER58B DNA MER1_type -24 317 194 273 288 17 68 chr9 98971698 98971816 -43299628 - L2 LINE L2 -505 2809 2698 1971 136 0 7 chr9 98972021 98972329 -43299115 + AluSq SINE Alu 5 310 -3 2539 52 0 0 chr9 98974658 98974968 -43296476 - AluY SINE Alu 0 311 2 812 178 62 83 chr9 98975299 98975495 -43295949 - L1MD3 LINE L1 0 7995 7803 2040 125 6 0 chr9 98975495 98975806 -43295638 + AluSp SINE Alu 1 313 0 812 178 62 83 chr9 98975806 98975851 -43295593 - L1MD3 LINE L1 -192 7803 7759 347 197 219 22 chr9 98976100 98976237 -43295207 - L1ME3A LINE L1 -215 5955 5792 25 0 0 0 chr9 98976336 98976361 -43295083 + AT_rich Low_complexity Low_complexity 1 25 0 1153 138 32 23 chr9 98976401 98976618 -43294826 - MER20 DNA MER1_type 0 219 1 288 214 0 18 chr9 98976770 98976826 -43294618 + LTR25 LTR ERV1 298 352 -442 255 191 0 131 chr9 98976808 98976892 -43294552 + MER61E LTR ERV1 86 158 -411 * 297 250 23 11 chr9 98976998 98977086 -43294358 + MER61E LTR ERV1 341 429 -140 1985 72 0 45 chr9 98977096 98977387 -43294057 - AluY SINE Alu -1 310 33 565 72 0 41 chr9 98977387 98977473 -43293971 - AluSg/x SINE Alu -9 300 217 827 187 24 57 chr9 98977473 98977682 -43293762 - L1M4 LINE L1 -1811 4335 4134 1448 75 0 10 chr9 98977789 98977990 -43293454 - AluSg/x SINE Alu -6 304 106 1906 111 13 7 chr9 98978107 98978405 -43293039 + AluSq SINE Alu 12 311 -2 3419 193 66 28 chr9 98978406 98978498 -43292946 + L1MB2 LINE L1 4357 4444 -1740 2151 87 0 39 chr9 98978498 98978639 -43292805 + AluY SINE Alu 1 146 -165 2097 64 43 7 chr9 98978639 98978921 -43292523 + AluY SINE Alu 1 292 -19 1372 78 0 0 chr9 98978922 98979088 -43292356 + AluY SINE Alu 132 297 -14 3419 193 66 28 chr9 98979088 98979794 -43291650 + L1MB2 LINE L1 4444 5122 -1062 2480 88 0 0 chr9 98979794 98980089 -43291355 + AluSx SINE Alu 1 295 -17 3419 193 66 28 chr9 98980089 98980908 -43290536 + L1MB2 LINE L1 5122 6056 -128 2469 109 6 0 chr9 98980913 98981262 -43290182 + L1PA14 LINE L1 5804 6154 -7 2243 104 0 0 chr9 98981262 98981577 -43289867 - AluSx SINE Alu 0 317 3 549 234 107 82 chr9 98981755 98981999 -43289445 - LTR16C LTR ERVL -162 329 80 180 353 13 33 chr9 98982182 98982332 -43289112 - L2 LINE L2 -657 2657 2511 789 208 55 121 chr9 98982465 98982845 -43288599 + L2 LINE L2 2922 3276 -37 1765 172 10 7 chr9 98982869 98983166 -43288278 - AluJo SINE Alu -14 298 1 180 0 0 0 chr9 98983179 98983199 -43288245 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 2459 62 3 10 chr9 98983229 98983534 -43287910 + AluY SINE Alu 1 303 -8 1736 147 0 0 chr9 98983544 98983803 -43287641 + AluSp SINE Alu 1 259 -54 252 309 27 9 chr9 98983807 98983917 -43287527 + MIR SINE MIR 151 262 0 2241 116 0 3 chr9 98985137 98985440 -43286004 - AluSx SINE Alu -10 302 1 189 213 21 0 chr9 98985440 98985487 -43285957 - MIR SINE MIR -58 204 157 2722 109 86 0 chr9 98985739 98986133 -43285311 - LTR12 LTR ERV1 -234 480 53 234 250 0 0 chr9 98986133 98986185 -43285259 - LTR30 LTR ERV1 -670 52 1 2229 121 0 0 chr9 98986588 98986894 -43284550 + AluSg SINE Alu 1 306 -4 210 37 0 0 chr9 98987625 98987652 -43283792 + (TG)n Simple_repeat Simple_repeat 1 27 0 2650 157 9 2 chr9 98987925 98988358 -43283086 - LOR1a LTR ERV1 -4 493 58 227 303 15 15 chr9 98988388 98988454 -43282990 + MER5A DNA MER1_type 108 173 -16 264 340 40 10 chr9 98989703 98989803 -43281641 - MIR SINE MIR -55 153 51 979 190 111 42 chr9 98989810 98990138 -43281306 + MLT1C LTR MaLR 5 334 -56 234 172 31 47 chr9 98990138 98990202 -43281242 - MLT1C LTR MaLR -36 431 369 267 79 0 0 chr9 98990565 98990603 -43280841 + (CACCAT)n Simple_repeat Simple_repeat 4 41 0 975 168 12 0 chr9 98991325 98991498 -43279946 - MER5A DNA MER1_type -14 175 1 2094 99 0 11 chr9 98991588 98991870 -43279574 - AluSg SINE Alu -31 279 1 191 246 35 0 chr9 98992310 98992367 -43279077 + L2 LINE L2 3214 3272 0 2278 118 0 9 chr9 98993135 98993450 -43277994 - AluSx SINE Alu 0 312 1 690 176 0 29 chr9 98993595 98993731 -43277713 + FLAM_C SINE Alu 1 132 -1 27 0 0 0 chr9 98993732 98993759 -43277685 + AT_rich Low_complexity Low_complexity 1 27 0 333 250 0 0 chr9 98993961 98994033 -43277411 - MER116 DNA Mariner -1 79 8 355 279 27 41 chr9 98994041 98994188 -43277256 - MIR SINE MIR -112 150 6 237 164 27 118 chr9 98994865 98994975 -43276469 - HAL1b LINE L1 -2 1346 1247 202 269 149 0 chr9 98995910 98995977 -43275467 + MIR SINE MIR 40 116 -146 2581 43 0 7 chr9 98996010 98996312 -43275132 + AluY SINE Alu 1 300 -11 1993 153 3 3 chr9 98996948 98997249 -43274195 - AluSx SINE Alu -11 301 1 180 0 0 0 chr9 98997280 98997300 -43274144 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1765 172 10 7 chr9 98997313 98997610 -43273834 + AluJo SINE Alu 1 298 -14 789 208 55 121 chr9 98997634 98998014 -43273430 - L2 LINE L2 -37 3276 2922 180 353 13 33 chr9 98998147 98998297 -43273147 + L2 LINE L2 2511 2657 -657 886 236 105 67 chr9 98998480 98998841 -43272603 + LTR16C LTR ERVL 80 454 -37 1462 233 34 51 chr9 98998852 98999325 -43272119 + MLT1C LTR MaLR 1 465 -2 850 134 0 8 chr9 98999408 98999542 -43271902 - FLAM_C SINE Alu 0 133 1 1708 267 41 29 chr9 98999542 99000029 -43271415 - MLT1H1 LTR MaLR -58 497 5 258 143 0 0 chr9 99000033 99000075 -43271369 + LTR16C LTR ERVL 450 491 0 2194 61 8 0 chr9 99000700 99000961 -43270483 - AluY SINE Alu -14 297 35 506 211 0 10 chr9 99001212 99001316 -43270128 - MER58 DNA MER1_type 0 2420 2318 227 265 193 0 chr9 99001313 99001396 -43270048 - MER58 DNA MER1_type -2321 99 1 * 2089 132 0 0 chr9 99002336 99002625 -43268819 + AluSx SINE Alu 1 289 -23 261 109 0 0 chr9 99003085 99003131 -43268313 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 2175 112 0 0 chr9 99003133 99003411 -43268033 - AluSc SINE Alu -31 278 1 2277 96 6 13 chr9 99003416 99003728 -43267716 - AluY SINE Alu -1 310 1 2023 128 3 14 chr9 99003730 99004026 -43267418 - AluSx SINE Alu -19 293 1 459 225 45 0 chr9 99004194 99004305 -43267139 + L2 LINE L2 3182 3297 -16 200 219 0 0 chr9 99004358 99004399 -43267045 - MIR SINE MIR -87 121 81 2323 100 0 0 chr9 99005370 99005670 -43265774 - AluSg SINE Alu -8 302 3 603 244 0 0 chr9 99007098 99007233 -43264211 - L1MA10 LINE L1 -7 6327 6193 2433 77 0 19 chr9 99007296 99007608 -43263836 - AluY SINE Alu -5 306 1 508 297 39 118 chr9 99007611 99008224 -43263220 - MLT1K LTR MaLR -8 580 16 1564 107 85 0 chr9 99008671 99008895 -43262549 + AluSp SINE Alu 1 243 -70 2399 63 0 3 chr9 99009123 99009410 -43262034 + AluY SINE Alu 5 290 -21 606 269 99 0 chr9 99009832 99010055 -43261389 - MIR SINE MIR -16 246 2 1574 148 84 37 chr9 99010583 99010881 -43260563 + AluJo SINE Alu 1 312 0 363 305 85 23 chr9 99011027 99011204 -43260240 - L3 LINE CR1 -346 1231 1044 2480 158 27 14 chr9 99011902 99012346 -43259098 + L1MB7 LINE L1 5734 6183 -1 2572 54 0 0 chr9 99012473 99012767 -43258677 + AluY SINE Alu 1 294 -17 382 167 83 0 chr9 99013281 99013353 -43258091 - MER5A DNA MER1_type -105 84 7 185 59 59 0 chr9 99013908 99013942 -43257502 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1951 170 3 3 chr9 99014586 99014898 -43256546 + AluJb SINE Alu 1 312 0 2186 102 41 0 chr9 99015908 99016202 -43255242 + AluSq SINE Alu 1 306 -7 2545 44 3 0 chr9 99016467 99016761 -43254683 + AluY SINE Alu 1 295 -16 2549 67 0 0 chr9 99017690 99017990 -43253454 - AluY SINE Alu -11 300 1 1140 139 29 0 chr9 99018178 99018351 -43253093 + MER20 DNA MER1_type 1 178 -41 1865 143 16 19 chr9 99018388 99018696 -43252748 - AluJb SINE Alu -1 311 5 297 0 0 0 chr9 99019720 99019753 -43251691 + (TG)n Simple_repeat Simple_repeat 1 33 0 510 329 23 23 chr9 99019942 99020158 -43251286 + MIR SINE MIR 20 235 -27 1502 174 4 8 chr9 99020619 99020861 -43250583 + AluJb SINE Alu 1 241 -71 243 0 0 0 chr9 99020869 99020896 -43250548 + (A)n Simple_repeat Simple_repeat 1 27 0 2219 46 4 4 chr9 99020896 99021157 -43250287 + AluY SINE Alu 1 261 -50 1265 71 0 0 chr9 99021157 99021311 -43250133 + AluY SINE Alu 146 299 -12 365 326 62 21 chr9 99021311 99021455 -43249989 - MIR SINE MIR -79 183 34 903 131 85 17 chr9 99021500 99021676 -43249768 - MER53 DNA DNA -1 188 1 29 0 0 0 chr9 99021830 99021859 -43249585 + AT_rich Low_complexity Low_complexity 1 29 0 2377 81 0 23 chr9 99021859 99022168 -43249276 - AluY SINE Alu -9 302 1 2272 102 0 0 chr9 99022172 99022481 -43248963 - AluSg SINE Alu 0 309 1 805 317 112 25 chr9 99022596 99022990 -43248454 - L2 LINE L2 0 3313 2886 1283 234 52 33 chr9 99023104 99023420 -43248024 + MER87 LTR ERV1 168 493 -48 2218 98 0 26 chr9 99023420 99023725 -43247719 - AluSx SINE Alu -15 297 1 1283 234 52 33 chr9 99023725 99023775 -43247669 + MER87 LTR ERV1 493 541 0 448 277 116 13 chr9 99024064 99024219 -43247225 - MER5B DNA MER1_type -7 171 1 213 365 40 8 chr9 99024665 99024791 -43246653 - MIR SINE MIR -115 147 18 339 25 0 0 chr9 99025271 99025311 -43246133 + (CA)n Simple_repeat Simple_repeat 2 41 0 182 271 17 17 chr9 99025742 99025801 -43245643 - L2 LINE L2 -2 3311 3253 2326 86 0 13 chr9 99025854 99026158 -43245286 - AluY SINE Alu -11 300 1 2502 65 3 0 chr9 99026671 99026978 -43244466 - AluY SINE Alu -3 308 1 2067 112 64 7 chr9 99026987 99027282 -43244162 - AluSx SINE Alu 0 312 1 998 184 79 34 chr9 99027308 99027575 -43243869 + L1MC5 LINE L1 7647 7925 -36 476 144 21 10 chr9 99028058 99028155 -43243289 + MER53 DNA DNA 21 118 -71 242 164 91 0 chr9 99028125 99028180 -43243264 - MER53 DNA DNA -129 60 1 * 201 154 0 0 chr9 99028332 99028371 -43243073 + A-rich Low_complexity Low_complexity 1 39 0 443 49 0 33 chr9 99028411 99028492 -43242952 - AluY SINE Alu 0 309 229 1358 57 0 0 chr9 99028492 99028649 -43242795 - AluY SINE Alu -154 157 1 404 276 136 71 chr9 99028657 99029063 -43242381 - HAL1 LINE L1 0 2507 2076 975 184 11 21 chr9 99029063 99029253 -43242191 - MER54A LTR ERVL 0 901 714 908 214 5 5 chr9 99029254 99029450 -43241994 + L1ME LINE L1 4977 5172 -974 1845 183 0 0 chr9 99029457 99029747 -43241697 - AluJb SINE Alu -22 290 1 248 32 0 0 chr9 99029792 99029823 -43241621 + AluY SINE Alu 1 31 -272 1698 169 3 7 chr9 99029994 99030296 -43241148 + AluSg SINE Alu 1 301 -9 927 210 29 65 chr9 99030307 99030648 -43240796 + L1ME LINE L1 5193 5524 -642 2331 97 0 0 chr9 99030648 99030946 -43240498 - AluSg SINE Alu -12 298 1 1719 139 69 4 chr9 99031096 99031370 -43240074 + AluJo SINE Alu 1 292 -20 1060 275 86 11 chr9 99031443 99031803 -43239641 - LTR16C LTR ERVL 0 491 105 1393 115 9 23 chr9 99033358 99033575 -43237869 + AluJo SINE Alu 84 297 -15 318 307 22 36 chr9 99033650 99033787 -43237657 - L2 LINE L2 -4 3268 3134 2538 37 7 3 chr9 99033803 99034099 -43237345 + AluY SINE Alu 1 297 -14 409 336 119 40 chr9 99034260 99034707 -43236737 - L2 LINE L2 -409 2905 2424 850 229 93 52 chr9 99034878 99035056 -43236388 - MER102b DNA MER1_type -1087 341 143 2361 113 0 0 chr9 99035056 99035365 -43236079 + AluSg SINE Alu 1 309 -1 850 229 93 52 chr9 99035365 99035496 -43235948 - MER102b DNA MER1_type -1285 143 19 308 311 102 23 chr9 99035575 99035639 -43235805 + L2 LINE L2 2216 2273 -1041 2556 84 0 0 chr9 99035639 99035949 -43235495 + AluSx SINE Alu 1 310 -2 308 311 102 23 chr9 99035949 99036148 -43235296 + L2 LINE L2 2273 2500 -814 331 192 26 51 chr9 99036202 99036280 -43235164 + MIR3 SINE MIR 97 172 -36 2455 66 3 10 chr9 99036551 99036855 -43234589 + AluY SINE Alu 1 302 -9 37 39 0 0 chr9 99037184 99037235 -43234209 + AT_rich Low_complexity Low_complexity 1 51 0 1122 244 83 65 chr9 99037676 99037709 -43233735 + MLT1J LTR MaLR 3 34 -477 206 62 31 0 chr9 99037709 99037741 -43233703 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1122 244 83 65 chr9 99037741 99038203 -43233241 + MLT1J LTR MaLR 34 507 -4 2287 154 62 166 chr9 99038271 99038904 -43232540 + LTR8A LTR ERV1 1 699 -28 2410 88 7 0 chr9 99038904 99039209 -43232235 + AluY SINE Alu 1 307 -4 2189 112 3 3 chr9 99039219 99039522 -43231922 + AluSq SINE Alu 1 303 -10 2287 154 62 166 chr9 99039522 99039689 -43231755 + LTR8A LTR ERV1 708 727 0 727 254 64 112 chr9 99039865 99040151 -43231293 + MLT1L LTR MaLR 22 267 -348 2477 61 0 3 chr9 99040151 99040445 -43230999 + AluSg SINE Alu 1 293 -17 727 254 64 112 chr9 99040445 99040749 -43230695 + MLT1L LTR MaLR 267 584 -31 2200 109 0 0 chr9 99041221 99041526 -43229918 - AluSc SINE Alu 0 305 1 235 280 70 10 chr9 99041541 99041641 -43229803 + MIR3 SINE MIR 66 171 -37 1699 121 101 48 chr9 99041815 99042170 -43229274 + THE1C LTR MaLR 1 374 -1 2423 72 3 0 chr9 99042821 99043112 -43228332 + AluSc SINE Alu 1 292 -17 212 306 82 10 chr9 99043322 99043420 -43228024 - L2 LINE L2 -25 3247 3143 2266 111 0 7 chr9 99043799 99044106 -43227338 + AluSx SINE Alu 1 305 -7 234 62 0 0 chr9 99044621 99044653 -43226791 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1939 96 11 4 chr9 99044656 99044917 -43226527 - AluSq SINE Alu -50 263 1 2454 77 3 0 chr9 99047074 99047373 -43224071 + AluSq SINE Alu 1 300 -13 2536 193 55 25 chr9 99047645 99048193 -43223251 - MER74B LTR ERVL 0 622 59 729 280 35 17 chr9 99048436 99048677 -43222767 + MIR SINE MIR 16 261 -1 2496 74 3 0 chr9 99048972 99049282 -43222162 - AluY SINE Alu 0 311 1 656 292 67 57 chr9 99049387 99049788 -43221656 - MLT1I LTR MaLR 0 409 5 371 239 100 96 chr9 99050036 99050147 -43221297 + MER5C DNA MER1_type 3 112 -212 2270 74 7 14 chr9 99050147 99050444 -43221000 - AluSc SINE Alu -14 295 1 371 239 100 96 chr9 99050444 99050583 -43220861 + MER5C DNA MER1_type 112 254 -70 488 59 29 0 chr9 99050804 99050872 -43220572 + MER41B LTR ERV1 481 550 -85 828 57 0 0 chr9 99050879 99050985 -43220459 + (GAA)n Simple_repeat Simple_repeat 2 107 0 214 310 49 14 chr9 99051038 99051180 -43220264 - L2 LINE L2 -1339 1975 1829 2296 84 7 3 chr9 99051824 99052123 -43219321 + AluY SINE Alu 1 300 -11 2439 106 0 0 chr9 99052130 99052442 -43219002 + AluSp SINE Alu 1 312 -1 4933 122 25 22 chr9 99052640 99052990 -43218454 - L1MA3 LINE L1 0 6305 5958 2491 58 3 0 chr9 99052990 99053285 -43218159 - AluY SINE Alu -14 297 2 4933 122 25 22 chr9 99053285 99053759 -43217685 - L1MA3 LINE L1 -347 5958 5478 203 213 66 66 chr9 99054010 99054071 -43217373 + MIR SINE MIR 16 76 -186 26 50 0 0 chr9 99055633 99055673 -43215771 + AT_rich Low_complexity Low_complexity 1 40 0 579 235 87 83 chr9 99055856 99056133 -43215311 - L1ME LINE L1 -4815 1446 1169 * 2324 184 140 64 chr9 99056132 99056666 -43214778 - L1MD3 LINE L1 0 7995 7503 350 308 0 0 chr9 99056666 99056757 -43214687 - MLT1F1 LTR MaLR -442 125 35 2324 184 140 64 chr9 99056757 99057183 -43214261 - L1MD3 LINE L1 -492 7503 6691 1865 238 131 37 chr9 99057211 99058013 -43213431 - L1ME LINE L1 -4979 1101 260 2391 63 3 3 chr9 99058014 99058300 -43213144 + AluSc SINE Alu 1 286 -23 511 101 61 182 chr9 99058400 99058494 -43212950 - MER85 DNA T2_type -9 130 59 2443 66 30 0 chr9 99058494 99058796 -43212648 - AluY SINE Alu 0 311 1 511 101 61 182 chr9 99058796 99058849 -43212595 - MER85 DNA T2_type -80 59 1 751 258 56 9 chr9 99058865 99059078 -43212366 - L1ME LINE L1 -5840 230 8 749 125 0 44 chr9 99059495 99059631 -43211813 - L1PA16 LINE L1 0 6166 6037 1815 171 23 7 chr9 99059638 99059937 -43211507 - AluJb SINE Alu -8 304 1 243 0 0 0 chr9 99060109 99060136 -43211308 + (CA)n Simple_repeat Simple_repeat 1 27 0 396 332 43 23 chr9 99060150 99060424 -43211020 + L1MDa LINE L1 1534 1938 -805 1058 210 26 34 chr9 99060424 99060691 -43210753 + MLT1G1 LTR MaLR 1 265 -330 653 228 102 92 chr9 99060755 99060961 -43210483 + MLT1H1 LTR MaLR 358 544 -11 305 331 74 35 chr9 99061276 99061587 -43209857 + L1MDa LINE L1 2315 2597 -3785 313 346 104 5 chr9 99061651 99061853 -43209591 + L1ME3A LINE L1 5664 5885 -285 187 152 0 0 chr9 99062391 99062424 -43209020 - L2 LINE L2 -8 3305 3273 270 308 29 10 chr9 99063424 99063528 -43207916 - L2 LINE L2 -279 3034 2929 485 278 0 0 chr9 99063549 99063664 -43207780 + MIR3 SINE MIR 83 197 -11 2258 74 42 3 chr9 99063727 99064012 -43207432 + AluY SINE Alu 1 296 -15 1378 153 0 0 chr9 99064036 99064238 -43207206 + AluJo SINE Alu 6 207 -105 209 244 0 0 chr9 99064975 99065020 -43206424 - L2 LINE L2 -1903 1411 1367 208 265 0 59 chr9 99065852 99065954 -43205490 - L2 LINE L2 -220 3052 2957 2681 52 0 0 chr9 99069915 99070220 -43201224 + AluY SINE Alu 1 305 -6 3817 150 154 118 chr9 99071166 99071689 -43199755 + L1MC3 LINE L1 6564 7067 -718 294 287 32 21 chr9 99071689 99071783 -43199661 + MLT1F1 LTR MaLR 36 130 -437 3817 150 154 118 chr9 99071783 99072115 -43199329 + L1MC3 LINE L1 7067 7386 -399 1973 137 0 3 chr9 99072115 99072427 -43199017 + AluJb SINE Alu 1 311 0 3817 150 154 118 chr9 99072427 99072608 -43198836 + L1MC3 LINE L1 7386 7736 -49 421 174 20 31 chr9 99072608 99072706 -43198738 - AluY SINE Alu 0 311 215 1569 127 0 22 chr9 99072787 99073016 -43198428 - AluJo SINE Alu -88 224 1 21 0 0 0 chr9 99073047 99073068 -43198376 + AT_rich Low_complexity Low_complexity 1 21 0 1439 147 155 4 chr9 99073068 99073189 -43198255 + AluJb SINE Alu 2 103 -199 369 0 0 0 chr9 99073189 99073230 -43198214 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1439 147 155 4 chr9 99073230 99073360 -43198084 + AluJb SINE Alu 103 291 -11 2371 74 3 0 chr9 99074006 99074304 -43197140 + AluY SINE Alu 1 299 -12 420 282 67 32 chr9 99075209 99075376 -43196068 + MIR3 SINE MIR 8 180 -28 1728 226 52 34 chr9 99078048 99078487 -43192957 - MLT1F1 LTR MaLR -7 560 114 374 218 36 73 chr9 99078583 99078693 -43192751 - MLT1F1 LTR MaLR -436 106 1 1114 261 92 33 chr9 99079243 99079734 -43191710 + LTR33A LTR ERVL 1 520 -3 1513 194 50 7 chr9 99082484 99082767 -43188677 - AluJb SINE Alu -17 295 1 22 56 0 0 chr9 99082774 99082810 -43188634 + AT_rich Low_complexity Low_complexity 1 36 0 1936 62 0 0 chr9 99082820 99083047 -43188397 + AluY SINE Alu 77 303 -8 25 83 0 0 chr9 99083063 99083123 -43188321 + AT_rich Low_complexity Low_complexity 1 60 0 279 257 71 0 chr9 99083227 99083340 -43188104 - L1ME4a LINE L1 -229 5892 5772 506 244 24 0 chr9 99083427 99083550 -43187894 - L1ME4a LINE L1 -481 5640 5515 244 196 186 0 chr9 99083593 99083690 -43187754 - L1P5 LINE L1 -726 5430 5316 321 294 42 21 chr9 99083868 99084011 -43187433 - L1ME4a LINE L1 -1098 5048 4903 2328 89 10 0 chr9 99084087 99084378 -43187066 - AluSc SINE Alu -15 294 1 2142 70 28 42 chr9 99084407 99084717 -43186727 + AluY SINE Alu 1 306 0 25 0 0 0 chr9 99084717 99084742 -43186702 + AT_rich Low_complexity Low_complexity 1 25 0 314 301 36 72 chr9 99084882 99085006 -43186438 - L1MC4a LINE L1 -1866 5942 5826 2131 120 7 3 chr9 99085006 99085315 -43186129 - AluSx SINE Alu -2 310 1 314 301 36 72 chr9 99085315 99085383 -43186061 - L1MC4a LINE L1 -1982 5826 5757 274 273 50 43 chr9 99085586 99085747 -43185697 - HAL1b LINE L1 -689 659 498 2534 54 7 0 chr9 99085866 99086164 -43185280 + AluY SINE Alu 1 300 -11 3162 205 59 39 chr9 99086255 99086339 -43185105 + L1ME2 LINE L1 5191 5272 -892 2242 104 34 0 chr9 99086339 99086637 -43184807 - AluSx SINE Alu -4 308 1 3162 205 59 39 chr9 99086637 99087457 -43183987 + L1ME2 LINE L1 5272 6130 -34 2091 119 10 7 chr9 99087459 99087753 -43183691 + AluSx SINE Alu 1 295 -17 322 71 0 0 chr9 99087773 99087815 -43183629 + MLT2B3 LTR ERVL 1 42 -512 59 46 0 0 chr9 99088344 99088431 -43183013 + AT_rich Low_complexity Low_complexity 1 87 0 1025 177 131 5 chr9 99088755 99088953 -43182491 + MER58A DNA MER1_type 2 224 0 285 270 0 0 chr9 99089996 99090059 -43181385 + L2 LINE L2 3248 3310 -3 2372 59 0 39 chr9 99090250 99090557 -43180887 - AluY SINE Alu 0 311 17 2370 74 10 10 chr9 99090727 99091036 -43180408 + AluY SINE Alu 1 309 -2 252 235 42 17 chr9 99092479 99092598 -43178846 + (TA)n Simple_repeat Simple_repeat 2 123 0 2226 120 0 3 chr9 99093426 99093735 -43177709 - AluSx SINE Alu -4 308 1 2174 92 3 7 chr9 99093743 99094053 -43177391 - AluSp SINE Alu 0 309 1 592 282 51 14 chr9 99094974 99095190 -43176254 - MIR SINE MIR -8 254 31 614 250 83 100 chr9 99096542 99096899 -43174545 - HAL1 LINE L1 -2 2505 2144 1478 147 18 48 chr9 99096899 99097171 -43174273 - AluJo SINE Alu -25 287 24 614 250 83 100 chr9 99097171 99097485 -43173959 - HAL1 LINE L1 -363 2144 741 1417 294 89 28 chr9 99097501 99098083 -43173361 - HAL1 LINE L1 -1852 655 38 2615 30 0 7 chr9 99098693 99098990 -43172454 - AluY SINE Alu -16 295 1 2063 93 54 0 chr9 99098996 99099275 -43172169 - AluSx SINE Alu -18 294 1 2884 92 19 64 chr9 99099881 99100201 -43171243 + L1PA15 LINE L1 5719 6013 -152 1691 154 6 61 chr9 99100201 99100512 -43170932 + AluJo SINE Alu 1 294 -18 2884 92 19 64 chr9 99100512 99100657 -43170787 + L1PA15 LINE L1 6013 6163 -2 231 325 0 24 chr9 99101024 99101107 -43170337 - MIR SINE MIR -112 96 16 1969 72 72 11 chr9 99101899 99102197 -43169247 + AluSc SINE Alu 1 314 0 2331 98 7 0 chr9 99102213 99102518 -43168926 + AluSg SINE Alu 1 307 -3 715 257 34 68 chr9 99103518 99103814 -43167630 + MLT1I LTR MaLR 124 409 0 357 308 82 25 chr9 99103859 99104018 -43167426 - MIR SINE MIR -64 198 31 194 133 0 111 chr9 99104228 99104273 -43167171 + MIR SINE MIR 108 147 -61 263 320 39 33 chr9 99105736 99105889 -43165555 + L3b LINE CR1 1116 1269 -314 2286 99 3 0 chr9 99105967 99106261 -43165183 + AluSc SINE Alu 1 295 -14 426 191 98 119 chr9 99106373 99106519 -43164925 - L1ME2 LINE L1 0 6164 6021 2245 113 7 7 chr9 99106519 99106819 -43164625 - AluSx SINE Alu -12 300 1 426 191 98 119 chr9 99106819 99106866 -43164578 - L1ME2 LINE L1 -143 6021 5975 201 327 48 0 chr9 99106877 99106981 -43164463 - MIR SINE MIR -66 142 34 1603 173 0 50 chr9 99108088 99108388 -43163056 + AluJo SINE Alu 1 285 -27 2108 132 3 0 chr9 99108396 99108691 -43162753 + AluSx SINE Alu 1 296 -16 695 329 130 10 chr9 99113448 99113855 -43157589 - L2 LINE L2 0 3313 2858 189 94 0 0 chr9 99114286 99114318 -43157126 + (T)n Simple_repeat Simple_repeat 1 32 0 2046 133 13 3 chr9 99116844 99117153 -43154291 - AluSx SINE Alu 0 312 1 344 184 0 35 chr9 99118024 99118111 -43153333 + MER103 DNA DNA 14 97 -69 239 292 62 0 chr9 99118362 99118458 -43152986 - L2 LINE L2 -31 3241 3140 504 133 15 67 chr9 99118486 99118621 -43152823 - Charlie7 DNA MER1_type -47 2565 2438 259 161 32 16 chr9 99119008 99119070 -43152374 + MIR SINE MIR 88 150 -58 2302 112 0 0 chr9 99119125 99119428 -43152016 - AluSx SINE Alu -9 303 1 2123 179 21 12 chr9 99121680 99122126 -43149318 - LTR56 LTR ERV1 0 437 14 627 174 36 7 chr9 99122681 99122869 -43148575 - MER41E LTR ERV1 -38 474 254 308 196 152 0 chr9 99123583 99123675 -43147769 + L2 LINE L2 3208 3313 0 1181 154 0 0 chr9 99124167 99124342 -43147102 - AluSg/x SINE Alu -6 306 132 567 226 80 61 chr9 99124957 99125169 -43146275 + MIR SINE MIR 4 219 -43 2699 20 7 0 chr9 99125174 99125472 -43145972 + AluY SINE Alu 1 300 -11 1966 122 44 10 chr9 99125577 99125871 -43145573 - AluSq SINE Alu -9 304 1 396 276 9 0 chr9 99126067 99126172 -43145272 + MIR SINE MIR 147 252 -10 237 132 0 0 chr9 99126274 99126312 -43145132 + (T)n Simple_repeat Simple_repeat 1 38 0 1383 142 0 0 chr9 99126339 99126544 -43144900 - MER1B DNA MER1_type 0 339 135 1040 109 0 0 chr9 99126545 99126682 -43144762 + AluSq/x SINE Alu 1 137 -175 1125 246 123 31 chr9 99126801 99127363 -43144081 - L1MDb LINE L1 -4431 1975 1362 189 344 31 0 chr9 99127691 99127755 -43143689 + L2 LINE L2 3224 3289 -24 31 0 0 0 chr9 99128708 99128739 -43142705 + AT_rich Low_complexity Low_complexity 1 31 0 765 213 27 37 chr9 99128929 99129117 -43142327 + MLT1J2 LTR MaLR 24 209 -241 1912 174 0 3 chr9 99129209 99129520 -43141924 - AluJb SINE Alu 0 312 3 2338 85 3 13 chr9 99129714 99130020 -43141424 - AluY SINE Alu -8 303 1 224 304 62 32 chr9 99130284 99130412 -43141032 + MIR SINE MIR 30 162 -64 351 60 0 0 chr9 99130984 99131034 -43140410 + (GA)n Simple_repeat Simple_repeat 1 50 0 234 0 0 0 chr9 99131034 99131060 -43140384 + (TG)n Simple_repeat Simple_repeat 2 27 0 529 302 72 45 chr9 99131069 99131253 -43140191 + L2 LINE L2 1446 1624 -1690 216 0 0 0 chr9 99131253 99131277 -43140167 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1516 192 0 17 chr9 99131277 99131564 -43139880 - AluJo SINE Alu -30 282 1 529 302 72 45 chr9 99131564 99131709 -43139735 + L2 LINE L2 1623 1785 -1529 2127 163 106 14 chr9 99132752 99133175 -43138269 - L1MC3 LINE L1 -144 7641 7180 287 247 26 26 chr9 99133180 99133257 -43138187 - MLT1F1 LTR MaLR -456 111 35 300 187 220 0 chr9 99133257 99133348 -43138096 - L1MC3 LINE L1 -688 7097 6987 954 217 63 5 chr9 99133595 99133766 -43137678 - MER58A DNA MER1_type -2197 223 37 1708 135 132 0 chr9 99133766 99134032 -43137412 + AluSx SINE Alu 2 302 0 954 217 63 5 chr9 99134032 99134067 -43137377 - MER58A DNA MER1_type -2383 37 5 1423 153 5 0 chr9 99134543 99134766 -43136678 - AluSg/x SINE Alu -13 299 76 1795 153 7 10 chr9 99134843 99135137 -43136307 - L1MA6 LINE L1 -4 6296 6004 240 274 133 26 chr9 99135157 99135270 -43136174 - L2 LINE L2 -10 3262 3138 1417 288 160 30 chr9 99135455 99136296 -43135148 - L2 LINE L2 0 3313 2294 2225 113 0 7 chr9 99136296 99136597 -43134847 + AluSq SINE Alu 1 299 -14 1417 288 160 30 chr9 99136597 99136700 -43134744 - L2 LINE L2 -1019 2294 2206 237 54 81 0 chr9 99136801 99136838 -43134606 - Alu SINE Alu -169 132 93 1964 170 0 0 chr9 99136911 99137217 -43134227 + AluJb SINE Alu 1 306 -6 285 297 166 23 chr9 99137540 99137715 -43133729 + MIR3 SINE MIR 6 205 -3 1558 132 132 4 chr9 99139102 99139376 -43132068 + AluSx SINE Alu 1 306 0 369 274 153 51 chr9 99139390 99139547 -43131897 - MER5A DNA MER1_type -13 176 4 1410 97 0 0 chr9 99140298 99140474 -43130970 + AluSp SINE Alu 130 305 -8 443 313 68 11 chr9 99140689 99140865 -43130579 + MIR3 SINE MIR 10 195 -13 560 211 86 16 chr9 99141731 99141859 -43129585 - FRAM SINE Alu -16 160 24 1264 212 0 19 chr9 99142141 99142405 -43129039 - MLT1D LTR MaLR 0 505 247 809 109 6 64 chr9 99142413 99142569 -43128875 + MLT1B LTR MaLR 1 147 -218 1832 117 77 0 chr9 99142577 99142850 -43128594 + AluSx SINE Alu 1 294 -18 589 141 24 0 chr9 99142852 99142937 -43128507 + AluSg/x SINE Alu 203 289 -20 870 202 19 12 chr9 99142943 99143144 -43128300 + MLT1B LTR MaLR 158 374 -11 914 166 12 115 chr9 99143172 99143425 -43128019 - MLT1D LTR MaLR -278 227 1 449 287 8 0 chr9 99143516 99143638 -43127806 + MIR SINE MIR 17 139 -123 882 308 75 56 chr9 99143687 99144599 -43126845 - L2 LINE L2 -8 3264 2341 1178 186 0 52 chr9 99144706 99144937 -43126507 + AluJo SINE Alu 14 232 -80 1041 139 40 23 chr9 99144936 99145109 -43126335 + AluSg/x SINE Alu 130 305 -5 * 562 146 0 24 chr9 99145117 99145199 -43126245 + AluJo SINE Alu 217 296 -16 215 152 43 22 chr9 99145484 99145530 -43125914 - MIR SINE MIR -80 128 82 1562 161 22 77 chr9 99147246 99147363 -43124081 + AluJo SINE Alu 1 123 -189 1748 140 39 25 chr9 99147363 99147676 -43123768 + AluJo SINE Alu 1 312 0 1562 161 22 77 chr9 99147676 99147869 -43123575 + AluJo SINE Alu 123 294 -18 491 241 13 32 chr9 99147869 99148020 -43123424 + L2 LINE L2 3164 3313 0 211 284 97 30 chr9 99148171 99148305 -43123139 + MIR SINE MIR 49 191 -71 215 239 68 57 chr9 99149039 99149127 -43122317 + MIR3 SINE MIR 109 197 -11 1772 159 0 24 chr9 99149363 99149652 -43121792 + AluJo SINE Alu 1 282 -30 243 0 0 0 chr9 99149655 99149682 -43121762 + (TAA)n Simple_repeat Simple_repeat 2 28 0 291 260 63 55 chr9 99149765 99149892 -43121552 + MIR SINE MIR 84 211 -51 187 365 16 0 chr9 99149910 99149973 -43121471 + L2 LINE L2 3147 3210 -62 342 0 0 0 chr9 99150599 99150637 -43120807 + (TG)n Simple_repeat Simple_repeat 2 39 0 800 253 16 0 chr9 99150637 99150831 -43120613 - L1MD2 LINE L1 -14 6345 6149 1340 153 47 0 chr9 99150834 99151070 -43120374 - LTR25 LTR ERV1 0 794 548 355 204 92 0 chr9 99151053 99151137 -43120307 + LTR25 LTR ERV1 471 794 0 * 323 284 148 66 chr9 99151163 99151346 -43120098 - L1MD2 LINE L1 -204 6155 5958 1831 69 0 0 chr9 99151350 99151566 -43119878 - AluSq SINE Alu -65 248 33 2701 187 45 41 chr9 99151567 99151790 -43119654 - L1MD2 LINE L1 -457 5902 5681 1034 182 0 0 chr9 99151790 99151955 -43119489 - FRAM SINE Alu 0 166 2 2701 187 45 41 chr9 99151955 99152330 -43119114 - L1MD2 LINE L1 -678 5681 5309 1088 157 0 18 chr9 99152330 99152496 -43118948 - FRAM SINE Alu -3 163 1 2701 187 45 41 chr9 99152496 99152508 -43118936 - L1MD2 LINE L1 -1050 5309 5299 1757 105 159 4 chr9 99152508 99152766 -43118678 - AluSx SINE Alu -3 299 2 2701 187 45 41 chr9 99152766 99152788 -43118656 - L1MD2 LINE L1 -1060 5299 5268 329 244 0 0 chr9 99152802 99152880 -43118564 - L1 LINE L1 -2983 3163 3086 203 267 0 0 chr9 99153789 99153849 -43117595 + T-rich Low_complexity Low_complexity 2 61 0 1556 216 41 55 chr9 99154500 99154936 -43116508 - MER57B LTR ERV1 0 434 5 649 292 58 22 chr9 99154937 99155297 -43116147 - MER89-int LTR ERV1 -487 7329 6957 2501 87 0 0 chr9 99155559 99155870 -43115574 - AluY SINE Alu 0 311 1 2150 123 13 0 chr9 99156618 99156926 -43114518 - AluSx SINE Alu 0 312 1 1482 238 29 61 chr9 99157391 99157928 -43113516 - MER89-int LTR ERV1 -1357 6180 2460 1154 265 3 34 chr9 99158041 99158366 -43113078 - MER89-int LTR ERV1 -1948 5589 5275 23 33 0 0 chr9 99158481 99158511 -43112933 + AT_rich Low_complexity Low_complexity 1 30 0 1898 153 36 0 chr9 99158539 99158840 -43112604 - AluJb SINE Alu 0 312 1 375 337 81 32 chr9 99158840 99159125 -43112319 - MER89-int LTR ERV1 -2958 3843 3545 2084 115 10 19 chr9 99160678 99160992 -43110452 + AluSx SINE Alu 1 311 -1 945 141 43 0 chr9 99161150 99161334 -43110110 + AluSg/x SINE Alu 118 309 -1 2343 112 0 3 chr9 99162052 99162366 -43109078 - AluSq SINE Alu 0 313 1 457 263 143 34 chr9 99162443 99162652 -43108792 - MIR SINE MIR 0 262 31 1991 151 0 3 chr9 99163799 99164097 -43107347 + AluJb SINE Alu 1 297 -15 421 234 124 7 chr9 99164373 99164510 -43106934 - MIR3 SINE MIR -34 174 22 2158 129 0 0 chr9 99166175 99166469 -43104975 - AluSx SINE Alu -18 294 1 702 192 22 64 chr9 99167317 99167492 -43103952 + MER5B DNA MER1_type 1 189 0 355 282 48 0 chr9 99167710 99167813 -43103631 + MER5B DNA MER1_type 7 114 -64 270 296 77 104 chr9 99167951 99168171 -43103273 - L2 LINE L2 -97 3175 2962 277 310 18 9 chr9 99168446 99168559 -43102885 - MLT1K LTR MaLR -10 578 465 623 314 18 18 chr9 99168717 99168994 -43102450 - MLT1L LTR MaLR -338 277 1 492 260 179 15 chr9 99169009 99169205 -43102239 + MIR SINE MIR 4 231 -31 3428 191 139 17 chr9 99169630 99170819 -43100625 - L1MDa LINE L1 -3828 2712 1358 1274 215 73 10 chr9 99171082 99171370 -43100074 - AluJo SINE Alu -4 308 3 245 269 39 13 chr9 99171471 99171549 -43099895 - MIR SINE MIR -78 130 51 348 322 51 8 chr9 99172053 99172171 -43099273 - L2 LINE L2 0 3272 3150 504 324 84 31 chr9 99172543 99173387 -43098057 + L1M4 LINE L1 3084 3972 -2174 1238 173 49 35 chr9 99173471 99173598 -43097846 + AluJb SINE Alu 1 134 -178 204 67 0 0 chr9 99173598 99173628 -43097816 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 1238 173 49 35 chr9 99173628 99173726 -43097718 + AluJb SINE Alu 134 229 -83 413 285 133 13 chr9 99173850 99174001 -43097443 + MIR3 SINE MIR 37 205 -3 321 254 203 14 chr9 99174425 99174563 -43096881 - MIR3 SINE MIR -44 164 1 405 286 104 28 chr9 99175986 99176168 -43095276 - MLT1J LTR MaLR -10 501 306 249 108 0 0 chr9 99176168 99176205 -43095239 + (TCCCC)n Simple_repeat Simple_repeat 4 40 0 2220 107 3 7 chr9 99176228 99176536 -43094908 - AluY SINE Alu -4 307 1 1104 89 0 0 chr9 99176536 99176671 -43094773 - AluSq/x SINE Alu -178 135 1 740 272 50 74 chr9 99176698 99176981 -43094463 - MLT1J LTR MaLR -200 311 36 311 333 19 31 chr9 99177095 99177257 -43094187 - L2 LINE L2 -37 3276 3117 1372 190 39 84 chr9 99181341 99181673 -43089771 - MER45B DNA AcHobo -700 340 24 396 233 119 28 chr9 99181991 99182652 -43088792 + L1ME4a LINE L1 5256 5970 -151 2198 109 0 7 chr9 99182755 99183057 -43088387 - AluSx SINE Alu -12 300 1 2223 116 10 0 chr9 99183057 99183358 -43088086 - AluSp SINE Alu -9 304 1 2169 167 80 150 chr9 99183360 99184336 -43087108 + L1MC5 LINE L1 6794 7698 -263 1798 171 7 0 chr9 99184336 99184615 -43086829 + AluSx SINE Alu 5 288 -24 447 92 0 0 chr9 99184615 99184680 -43086764 + (CATA)n Simple_repeat Simple_repeat 2 66 0 1798 171 7 0 chr9 99184680 99184693 -43086751 + AluSx SINE Alu 288 299 -13 2169 167 80 150 chr9 99184693 99184730 -43086714 + L1MC5 LINE L1 7698 7736 -225 415 260 0 10 chr9 99184879 99184983 -43086461 + L1M4 LINE L1 4825 4927 -1219 207 0 0 0 chr9 99185904 99185927 -43085517 + (TG)n Simple_repeat Simple_repeat 2 24 0 1594 220 72 16 chr9 99185994 99186752 -43084692 - L1MC/D LINE L1 -743 5403 4921 5096 209 6 6 chr9 99186779 99187834 -43083610 + L1 LINE L1 3187 4241 -1905 2185 86 10 3 chr9 99187839 99188129 -43083315 - AluY SINE Alu -19 292 1 6960 208 60 48 chr9 99188143 99188728 -43082716 - L1MC/D LINE L1 -1222 4924 4347 2261 101 3 13 chr9 99188728 99188899 -43082545 - AluSc SINE Alu -6 303 135 2337 77 3 16 chr9 99188899 99189210 -43082234 - AluY SINE Alu -4 307 1 2261 101 3 13 chr9 99189210 99189344 -43082100 - AluSc SINE Alu -174 135 1 6960 208 60 48 chr9 99189344 99189582 -43081862 - L1MC/D LINE L1 -1799 4347 4113 1732 192 7 3 chr9 99189582 99189889 -43081555 - AluJo SINE Alu -4 308 1 6960 208 60 48 chr9 99189889 99190991 -43080453 - L1MC/D LINE L1 -2033 4113 2966 2178 118 0 10 chr9 99190991 99191296 -43080148 - AluSx SINE Alu -10 302 1 6960 208 60 48 chr9 99191296 99191590 -43079854 - L1MC/D LINE L1 -3180 2966 2677 2013 164 0 3 chr9 99191592 99191903 -43079541 + AluJo SINE Alu 1 310 -2 2247 108 3 0 chr9 99191903 99192197 -43079247 + AluSx SINE Alu 1 296 -16 243 178 0 0 chr9 99192239 99192284 -43079160 - L1MC/D LINE L1 -3454 2692 2648 6445 87 10 21 chr9 99192405 99193740 -43077704 + L1PA10 LINE L1 4865 6168 0 291 54 0 0 chr9 99194515 99194552 -43076892 + (TG)n Simple_repeat Simple_repeat 2 38 0 2355 92 0 0 chr9 99194579 99194872 -43076572 + AluSx SINE Alu 1 293 -19 21 71 0 0 chr9 99194920 99194962 -43076482 + AT_rich Low_complexity Low_complexity 1 42 0 205 182 36 0 chr9 99194977 99195032 -43076412 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 317 291 0 0 chr9 99195204 99195290 -43076154 + L2 LINE L2 3223 3308 -5 1380 162 46 33 chr9 99195301 99195604 -43075840 + L1M4 LINE L1 4917 5223 -923 379 273 61 8 chr9 99196403 99196535 -43074909 + MIR SINE MIR 117 255 -7 445 306 0 24 chr9 99196887 99197057 -43074387 + (CCA)n Simple_repeat Simple_repeat 3 168 0 2399 89 3 0 chr9 99200454 99200756 -43070688 + AluSp SINE Alu 1 303 -10 407 314 86 5 chr9 99200793 99201013 -43070431 + MIR SINE MIR 11 248 -14 267 364 0 16 chr9 99201088 99201217 -43070227 + L3b LINE CR1 1108 1234 -349 384 22 0 0 chr9 99201734 99201779 -43069665 + (TG)n Simple_repeat Simple_repeat 2 46 0 503 256 94 42 chr9 99203121 99203481 -43067963 + L1MC4a LINE L1 5683 6061 -1747 2327 109 0 0 chr9 99203504 99203806 -43067638 + AluSx SINE Alu 1 302 -10 1687 188 13 7 chr9 99203877 99204175 -43067269 + AluJb SINE Alu 1 300 -12 2324 76 3 19 chr9 99204721 99205037 -43066407 - AluY SINE Alu 0 311 1 1740 169 17 17 chr9 99206445 99206746 -43064698 + AluJb SINE Alu 1 301 -11 310 272 40 32 chr9 99206775 99206900 -43064544 + HUERS-P3 LTR ERV1 1686 1811 -7108 1284 300 67 79 chr9 99207072 99208449 -43062995 + HUERS-P3 LTR ERV1 1536 3024 -1774 213 39 0 0 chr9 99209891 99209917 -43061527 + (A)n Simple_repeat Simple_repeat 1 26 0 181 206 137 27 chr9 99210422 99210495 -43060949 + MIR3 SINE MIR 104 184 -24 300 203 25 13 chr9 99211347 99211426 -43060018 - MER116 DNA Mariner 0 80 1 616 196 118 0 chr9 99212396 99212549 -43058895 - L1ME3A LINE L1 0 6170 6000 694 192 0 0 chr9 99212579 99212704 -43058740 + MLT1D LTR MaLR 381 505 0 211 225 28 42 chr9 99212712 99212783 -43058661 - MIR SINE MIR -181 81 12 248 373 56 20 chr9 99213309 99213561 -43057883 + MLT1L LTR MaLR 347 607 -8 582 218 64 77 chr9 99214694 99214914 -43056530 - Charlie8 DNA MER1_type -2032 385 169 357 24 0 0 chr9 99215069 99215111 -43056333 + (TG)n Simple_repeat Simple_repeat 2 43 0 333 253 11 11 chr9 99215147 99215238 -43056206 - Charlie8 DNA MER1_type -2244 173 83 739 193 33 0 chr9 99215287 99215437 -43056007 + MER5A DNA MER1_type 1 155 -34 424 159 45 11 chr9 99215455 99215543 -43055901 + MER53 DNA DNA 94 184 -5 735 274 32 0 chr9 99215602 99215821 -43055623 + MIR SINE MIR 36 261 -1 1903 88 39 8 chr9 99216981 99217284 -43054160 + AluSg SINE Alu 14 324 0 205 271 8 59 chr9 99218387 99218505 -43052939 + CT-rich Low_complexity Low_complexity 2 113 0 699 252 48 35 chr9 99219075 99219305 -43052139 + MIR SINE MIR 9 241 -21 1834 117 3 32 chr9 99219441 99219724 -43051720 - AluSg SINE Alu 0 310 36 542 118 0 0 chr9 99220552 99220628 -43050816 + AluS SINE Alu 2 77 -236 2023 68 20 0 chr9 99220628 99220880 -43050564 + AluSp SINE Alu 38 294 -19 209 244 0 0 chr9 99222913 99222958 -43048486 + L2 LINE L2 1367 1411 -1903 1709 96 0 0 chr9 99223695 99223903 -43047541 - AluSx SINE Alu -104 208 1 1101 209 23 33 chr9 99223904 99224206 -43047238 - L1M4 LINE L1 -981 5165 4867 2326 86 0 13 chr9 99224402 99224706 -43046738 - AluY SINE Alu -11 300 1 2524 59 7 0 chr9 99225219 99225523 -43045921 - AluY SINE Alu -5 306 1 274 273 50 43 chr9 99225642 99225803 -43045641 + HAL1b LINE L1 498 659 -689 2131 120 7 3 chr9 99226074 99226383 -43045061 + AluSx SINE Alu 1 310 -2 405 221 44 18 chr9 99226544 99226657 -43044787 + L2 LINE L2 3182 3297 -16 200 219 0 0 chr9 99226710 99226751 -43044693 - MIR SINE MIR -87 121 81 2340 109 0 0 chr9 99227722 99228026 -43043418 - AluSx SINE Alu -8 304 1 711 169 0 29 chr9 99228170 99228306 -43043138 + FLAM_C SINE Alu 1 132 -1 27 0 0 0 chr9 99228307 99228334 -43043110 + AT_rich Low_complexity Low_complexity 1 27 0 333 250 0 0 chr9 99228536 99228608 -43042836 - MER116 DNA Mariner -1 79 8 355 279 27 41 chr9 99228616 99228763 -43042681 - MIR SINE MIR -112 150 6 237 164 27 118 chr9 99229438 99229548 -43041896 - HAL1b LINE L1 -2 1346 1247 264 354 85 69 chr9 99430323 99430642 -42840802 + L2 LINE L2 2941 3264 -8 2067 120 3 7 chr9 99431015 99431307 -42840137 - AluSc SINE Alu -18 291 1 221 408 60 9 chr9 99432048 99432266 -42839178 + L2 LINE L2 2827 3055 -217 189 299 196 0 chr9 99432331 99432428 -42839016 + MIR SINE MIR 2 117 -145 236 296 52 26 chr9 99432940 99433055 -42838389 - LTR67 LTR ERVL -14 543 426 503 324 34 15 chr9 99433450 99433654 -42837790 - MIR SINE MIR -49 213 6 419 318 69 9 chr9 99433747 99433964 -42837480 + L2 LINE L2 2939 3168 -145 303 256 26 68 chr9 99434851 99434968 -42836476 - L2 LINE L2 0 3272 3161 1860 119 91 38 chr9 99435145 99435465 -42835979 - MER1B DNA MER1_type 0 337 1 2178 128 56 8 chr9 99436801 99437159 -42834285 - THE1C LTR MaLR 0 375 1 8891 97 53 15 chr9 99437159 99438477 -42832967 - THE1C-int LTR MaLR 0 1580 213 4813 83 0 8 chr9 99438582 99439209 -42832235 + THE1B-int LTR MaLR 959 1580 0 2181 149 25 0 chr9 99439209 99439564 -42831880 + THE1B LTR MaLR 1 364 0 593 287 53 14 chr9 99440385 99440594 -42830850 - MIR SINE MIR -13 249 33 399 308 91 45 chr9 99441229 99441427 -42830017 + LTR33 LTR ERVL 9 215 -306 325 184 75 82 chr9 99441540 99441687 -42829757 + LTR33 LTR ERVL 366 511 -10 229 338 0 0 chr9 99441978 99442058 -42829386 + MIR SINE MIR 170 249 -13 206 378 84 0 chr9 99442166 99442285 -42829159 + L3 LINE CR1 1430 1558 -19 1916 135 53 61 chr9 99442386 99442764 -42828680 + THE1C LTR MaLR 1 375 0 196 279 49 0 chr9 99442880 99442941 -42828503 - L2 LINE L2 -9 3304 3241 1051 222 70 168 chr9 99443017 99443773 -42827671 - L2 LINE L2 -443 2871 2190 395 318 228 5 chr9 99443919 99444130 -42827314 + MIR SINE MIR 3 260 -2 22 35 0 0 chr9 99444773 99444802 -42826642 + AT_rich Low_complexity Low_complexity 1 29 0 182 294 20 0 chr9 99444811 99444862 -42826582 - L2 LINE L2 0 3313 3262 204 40 0 0 chr9 99444923 99444948 -42826496 + (CA)n Simple_repeat Simple_repeat 2 26 0 1048 194 51 0 chr9 99445662 99445858 -42825586 - MER2 DNA MER2_type -139 206 1 300 350 80 20 chr9 99447926 99448126 -42823318 + MIR SINE MIR 28 239 -23 2294 158 10 33 chr9 99448138 99448686 -42822758 + L1P3 LINE L1 6 836 -5625 850 298 185 27 chr9 99448989 99449701 -42821743 + L2 LINE L2 2438 3305 -8 534 269 47 31 chr9 99449742 99449935 -42821509 - L2 LINE L2 -835 2479 2284 2026 226 46 13 chr9 99450361 99450988 -42820456 + MER114 LTR ERV 1 648 0 193 246 77 31 chr9 99452996 99453061 -42818383 - L2 LINE L2 -9 3304 3237 204 266 78 0 chr9 99453358 99453422 -42818022 - MIR3 SINE MIR -139 69 1 21 0 0 0 chr9 99453615 99453636 -42817808 + AT_rich Low_complexity Low_complexity 1 21 0 316 287 108 8 chr9 99455358 99455487 -42815957 + MIR SINE MIR 113 254 -8 30 0 0 0 chr9 99455497 99455527 -42815917 + AT_rich Low_complexity Low_complexity 1 30 0 338 269 231 23 chr9 99455529 99455745 -42815699 - L3 LINE CR1 -1 1576 1316 22 35 0 0 chr9 99455932 99455961 -42815483 + AT_rich Low_complexity Low_complexity 1 29 0 747 288 30 30 chr9 99456442 99456675 -42814769 + MIR SINE MIR 6 238 -24 373 331 59 12 chr9 99457638 99457807 -42813637 + L2 LINE L2 353 529 -2785 25 0 0 0 chr9 99458132 99458157 -42813287 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr9 99459153 99459185 -42812259 + AT_rich Low_complexity Low_complexity 1 32 0 239 188 0 14 chr9 99459240 99459309 -42812135 + (TA)n Simple_repeat Simple_repeat 1 68 0 21 0 0 0 chr9 99459495 99459516 -42811928 + AT_rich Low_complexity Low_complexity 1 21 0 200 170 19 19 chr9 99461409 99461462 -42809982 + T-rich Low_complexity Low_complexity 3 55 0 736 205 50 21 chr9 99462345 99462610 -42808834 - MER66B LTR ERV1 0 478 185 229 199 15 61 chr9 99462652 99462783 -42808661 + (TTATA)n Simple_repeat Simple_repeat 1 125 0 315 0 0 0 chr9 99463489 99463524 -42807920 + (TG)n Simple_repeat Simple_repeat 2 36 0 268 319 124 35 chr9 99463524 99463693 -42807751 - LTR16A LTR ERVL -9 441 258 401 225 0 12 chr9 99464576 99464656 -42806788 - MER2 DNA MER2_type -11 334 256 1119 150 23 0 chr9 99464659 99464832 -42806612 + AluSq SINE Alu 4 180 -133 963 311 72 33 chr9 99465101 99465621 -42805823 + L1MC4 LINE L1 6451 6949 -1093 1351 214 23 13 chr9 99465621 99465929 -42805515 + AluJo SINE Alu 1 311 -1 963 311 72 33 chr9 99465929 99466339 -42805105 + L1MC4 LINE L1 6949 7512 -530 376 267 23 53 chr9 99466525 99466656 -42804788 + L1MC4 LINE L1 7797 7923 -119 198 0 0 0 chr9 99468200 99468222 -42803222 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4006 24 0 0 chr9 99468222 99468684 -42802760 - L1PA3 LINE L1 -18 6137 5676 2065 132 53 34 chr9 99469429 99469785 -42801659 + THE1B LTR MaLR 2 364 0 292 356 106 33 chr9 99471024 99471299 -42800145 - MLT1I LTR MaLR 0 409 115 330 320 86 45 chr9 99471378 99471600 -42799844 + MIR SINE MIR 29 259 -3 203 152 0 0 chr9 99473966 99473999 -42797445 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 525 258 6 2 chr9 99475372 99475509 -42795935 + L1M2b LINE L1 1259 1687 -5522 3412 164 70 7 chr9 99475510 99476254 -42795190 + L1M2b LINE L1 1887 2677 -4532 1043 229 161 14 chr9 99476359 99476611 -42794833 + L1MDa LINE L1 1277 1491 -5049 2311 87 3 3 chr9 99476611 99476909 -42794535 + AluSx SINE Alu 2 299 -13 1043 229 161 14 chr9 99476909 99477141 -42794303 + L1MDa LINE L1 1491 1832 -4708 389 344 50 6 chr9 99477174 99477354 -42794090 + MIR SINE MIR 40 227 -35 243 315 103 42 chr9 99477851 99478016 -42793428 - MIR3 SINE MIR -27 181 7 2301 116 0 0 chr9 99478149 99478460 -42792984 + AluSx SINE Alu 1 311 -1 29 0 0 0 chr9 99479013 99479042 -42792402 + AT_rich Low_complexity Low_complexity 1 29 0 2035 129 13 7 chr9 99479271 99479573 -42791871 + AluSx SINE Alu 1 304 -8 1509 190 5 94 chr9 99479967 99480340 -42791104 + MLT1A1 LTR MaLR 26 365 0 376 322 71 16 chr9 99480547 99480730 -42790714 - MIR SINE MIR -33 229 37 3796 180 53 45 chr9 99480858 99481878 -42789566 + L1MB4 LINE L1 5159 6180 0 280 271 140 9 chr9 99481881 99481988 -42789456 + MIR SINE MIR 138 258 -4 478 313 71 13 chr9 99482102 99482412 -42789032 - L1ME4a LINE L1 -216 5905 5578 571 200 25 8 chr9 99482513 99482633 -42788811 - L1MB3 LINE L1 -57 6126 6005 * 1055 133 17 6 chr9 99482630 99482803 -42788641 + L1MC1 LINE L1 5649 5823 -510 1306 175 4 48 chr9 99482803 99483054 -42788390 + AluJo SINE Alu 43 282 -30 787 187 0 0 chr9 99483084 99483218 -42788226 - AluJo SINE Alu -178 134 1 2398 185 10 12 chr9 99483225 99483707 -42787737 + L1MC1 LINE L1 5851 6331 -2 4778 204 80 42 chr9 99483718 99483813 -42787631 + L1MD1 LINE L1 1114 1204 -5336 2332 92 0 19 chr9 99483813 99484127 -42787317 + AluSx SINE Alu 1 308 -4 4778 204 80 42 chr9 99484127 99485410 -42786034 + L1MD1 LINE L1 1204 2614 -3926 1903 149 4 0 chr9 99485410 99485686 -42785758 + AluSx SINE Alu 21 297 -15 4778 204 80 42 chr9 99485686 99486433 -42785011 + L1MD1 LINE L1 2614 3331 -3209 2362 51 10 14 chr9 99488255 99488548 -42782896 + AluY SINE Alu 1 292 -19 1548 258 39 10 chr9 99488877 99489546 -42781898 + L1MD1 LINE L1 3313 4033 -2507 4995 214 50 25 chr9 99489956 99490263 -42781181 + L1MD1 LINE L1 4018 4316 -2320 1938 132 34 7 chr9 99490263 99490559 -42780885 + AluSx SINE Alu 3 306 -6 4995 214 50 25 chr9 99490559 99492803 -42778641 + L1MD1 LINE L1 4316 6630 -6 1470 205 16 103 chr9 99492803 99493193 -42778251 + L1MC5 LINE L1 6616 6954 -1007 1939 151 14 0 chr9 99493193 99493484 -42777960 + AluJo SINE Alu 1 295 -17 1470 205 16 103 chr9 99493484 99493600 -42777844 + L1MC5 LINE L1 6954 7078 -883 565 247 103 20 chr9 99493649 99493988 -42777456 + L2 LINE L2 2639 2997 -316 451 182 80 0 chr9 99494395 99494483 -42776961 + MLT1E2 LTR MaLR 114 208 -418 1518 201 158 19 chr9 99494489 99494956 -42776488 - L1ME LINE L1 -370 5794 5263 8377 82 9 150 chr9 99494959 99496514 -42774930 - SVA Other Other 0 1386 51 345 47 0 0 chr9 99496517 99496560 -42774884 + (GGGAGA)n Simple_repeat Simple_repeat 1 43 0 632 72 13 56 chr9 99498371 99498557 -42772887 + HSAT5 Satellite Satellite 1 177 -1 245 295 0 0 chr9 99498682 99498760 -42772684 + HSAT5 Satellite Satellite 1 78 -8 360 223 0 12 chr9 99498826 99498925 -42772519 + HSAT5 Satellite Satellite 1 97 -3 228 188 58 29 chr9 99499001 99499070 -42772374 + HSAT5 Satellite Satellite 15 85 -1 323 188 19 26 chr9 99499186 99499277 -42772167 + HSAT5 Satellite Satellite 1 90 -8 * 627 253 81 10 chr9 99499262 99499460 -42771984 - MSTA LTR MaLR -141 287 76 846 197 184 21 chr9 99499464 99499698 -42771746 + THE1-int LTR MaLR 907 1178 -402 446 100 0 150 chr9 99500202 99500302 -42771142 - HSAT5 Satellite Satellite 0 86 2 229 191 0 0 chr9 99500372 99500419 -42771025 - MSTA LTR MaLR -323 105 59 6155 230 49 29 chr9 99500426 99502018 -42769426 - MSTA-int LTR MaLR 0 1651 28 502 231 154 7 chr9 99502013 99502156 -42769288 + MST-int LTR MaLR 504 667 -984 * 1082 208 75 30 chr9 99502188 99502453 -42768991 - MSTA LTR MaLR -56 372 96 838 225 189 20 chr9 99502473 99502717 -42768727 + THE1-int LTR MaLR 907 1191 -389 5264 235 52 32 chr9 99502826 99504240 -42767204 - MSTA-int LTR MaLR -182 1469 28 455 214 157 29 chr9 99504235 99504375 -42767069 + MST-int LTR MaLR 504 661 -990 * 1090 210 70 14 chr9 99504409 99504695 -42766749 - MSTA LTR MaLR -52 376 75 871 189 202 21 chr9 99504706 99504944 -42766500 + THE1-int LTR MaLR 907 1187 -393 308 177 65 0 chr9 99504936 99504998 -42766446 - THE1-int LTR MaLR -613 967 902 * 510 158 21 0 chr9 99505090 99505185 -42766259 - MSTA LTR MaLR -331 97 1 1096 244 3 33 chr9 99505200 99505499 -42765945 - MSTA-int LTR MaLR -15 1636 1347 292 277 119 0 chr9 99505511 99505612 -42765832 - MSTA LTR MaLR -257 171 59 399 237 10 0 chr9 99505658 99505755 -42765689 - MSTA LTR MaLR -328 100 3 6298 216 58 32 chr9 99505757 99507335 -42764109 - MSTA-int LTR MaLR 0 1651 32 560 181 156 10 chr9 99507337 99507488 -42763956 + MST-int LTR MaLR 466 661 -963 972 259 49 8 chr9 99507506 99507772 -42763672 - MSTA LTR MaLR -54 374 98 780 205 189 20 chr9 99507797 99508041 -42763403 + THE1-int LTR MaLR 907 1191 -389 228 232 18 0 chr9 99508029 99508085 -42763359 - THE1-int LTR MaLR -613 967 911 * 441 184 11 0 chr9 99508191 99508278 -42763166 - MSTA LTR MaLR -340 88 1 1389 211 6 42 chr9 99508278 99508614 -42762830 - MSTA-int LTR MaLR 0 1651 1328 372 191 73 36 chr9 99508614 99508724 -42762720 - MSTA LTR MaLR -250 178 65 324 253 21 0 chr9 99508771 99508866 -42762578 - MSTA LTR MaLR -329 99 3 6490 219 54 20 chr9 99508866 99510433 -42761011 - MSTA-int LTR MaLR -1 1650 32 457 242 26 33 chr9 99510435 99510588 -42760856 + THE1-int LTR MaLR 466 617 -963 1168 205 51 22 chr9 99510604 99510877 -42760567 - MSTA LTR MaLR -52 376 96 881 202 193 21 chr9 99510902 99511145 -42760299 + THE1-int LTR MaLR 907 1191 -389 232 103 0 0 chr9 99511133 99511162 -42760282 - THE1-int LTR MaLR -613 967 939 * 440 187 17 25 chr9 99511277 99511390 -42760054 - MSTA LTR MaLR -324 112 4 1489 209 0 37 chr9 99511403 99511728 -42759716 - MSTA-int LTR MaLR -21 1630 1318 315 262 0 0 chr9 99511735 99511796 -42759648 - MSTA LTR MaLR -273 155 95 278 220 80 40 chr9 99511862 99511962 -42759482 - MSTA LTR MaLR -324 104 1 5897 220 81 20 chr9 99511962 99513488 -42757956 - MSTA-int LTR MaLR 0 1651 32 446 257 33 33 chr9 99513490 99513642 -42757802 + THE1-int LTR MaLR 466 617 -963 1407 166 95 7 chr9 99513658 99513954 -42757490 - MSTA LTR MaLR -52 376 55 225 143 0 71 chr9 99513957 99513999 -42757445 + MST-int LTR MaLR 976 1014 -637 * 441 180 62 47 chr9 99513986 99514114 -42757330 + THE1-int LTR MaLR 1062 1191 -389 281 146 21 0 chr9 99514102 99514150 -42757294 - MST-int LTR MaLR -616 1035 987 * 417 255 0 0 chr9 99514280 99514382 -42757062 - MST-int LTR MaLR -1522 129 28 * 468 231 154 0 chr9 99514379 99514522 -42756922 + MST-int LTR MaLR 506 670 -981 1506 217 32 35 chr9 99514550 99514924 -42756520 - MSTA LTR MaLR -55 373 1 1192 167 45 20 chr9 99514924 99515169 -42756275 - MSTA-int LTR MaLR 0 1651 1401 * 1373 167 0 4 chr9 99515166 99515405 -42756039 - MSTA-int LTR MaLR -1401 250 13 1630 219 48 3 chr9 99515434 99515786 -42755658 - MSTA LTR MaLR -60 368 1 1679 151 86 35 chr9 99517739 99518171 -42753273 + SN5 Other centromeric 2 455 0 204 184 0 0 chr9 99518409 99518458 -42752986 + (TG)n Simple_repeat Simple_repeat 2 50 0 231 326 0 12 chr9 99518832 99518918 -42752526 + HSAT5 Satellite Satellite 2 86 0 267 231 13 26 chr9 99518956 99519034 -42752410 + HSAT5 Satellite Satellite 9 85 -1 255 216 0 100 chr9 99519179 99519294 -42752150 + HSAT5 Satellite Satellite 1 103 -1 265 288 0 18 chr9 99519319 99519420 -42752024 + HSAT5 Satellite Satellite 1 99 -1 1184 228 235 2 chr9 99519990 99520424 -42751020 + L1MC4 LINE L1 6827 7361 -681 190 313 0 12 chr9 99521300 99521380 -42750064 - L2 LINE L2 -227 3045 2967 2300 116 0 0 chr9 99522422 99522723 -42748721 + AluSc SINE Alu 1 301 -8 25 75 0 0 chr9 99522822 99522875 -42748569 + AT_rich Low_complexity Low_complexity 1 53 0 2744 164 18 27 chr9 99522886 99523434 -42748010 - L1PA16 LINE L1 0 6166 5624 1298 107 0 0 chr9 99523438 99523606 -42747838 - AluSq SINE Alu -145 168 1 2198 131 0 0 chr9 99523803 99524100 -42747344 + AluSg SINE Alu 1 297 -13 420 260 0 0 chr9 99525038 99525142 -42746302 + L1MA9 LINE L1 6163 6266 -46 1433 195 14 34 chr9 99527586 99527883 -42743561 + AluJo SINE Alu 6 296 -16 3097 194 61 29 chr9 99527996 99529087 -42742357 + L1MA5 LINE L1 4808 5946 -354 1089 236 35 12 chr9 99529088 99529346 -42742098 + AluJo SINE Alu 1 264 -48 1241 158 54 43 chr9 99529418 99529697 -42741747 + L1MA5 LINE L1 6013 6294 -6 685 270 144 42 chr9 99529733 99530111 -42741333 + MLT1G1 LTR MaLR 45 561 -34 2291 189 27 48 chr9 99531454 99532105 -42739339 + L1MB8 LINE L1 4771 5696 -473 2182 104 0 24 chr9 99532105 99532402 -42739042 - AluSg SINE Alu -20 290 1 2291 189 27 48 chr9 99532402 99532541 -42738903 + L1MB8 LINE L1 5696 5836 -333 1990 158 70 13 chr9 99532541 99532970 -42738474 + MER61C LTR ERV1 1 434 0 1146 207 65 12 chr9 99532970 99533294 -42738150 + L1MB8 LINE L1 5833 6173 -5 21 36 0 0 chr9 99533404 99533432 -42738012 + AT_rich Low_complexity Low_complexity 1 28 0 2147 222 28 82 chr9 99533529 99534323 -42737121 + MER4E LTR ERV1 26 776 -3 3086 133 25 0 chr9 99534386 99534875 -42736569 + L1PA10 LINE L1 5657 6157 -11 2108 140 7 0 chr9 99535262 99535562 -42735882 - AluSq SINE Alu -11 302 1 24 0 0 0 chr9 99536141 99536165 -42735279 + AT_rich Low_complexity Low_complexity 1 24 0 374 129 0 14 chr9 99536170 99536240 -42735204 - MER34C LTR ERV1 -94 491 423 1790 151 40 0 chr9 99536512 99536810 -42734634 + AluSg SINE Alu 2 310 0 22 0 0 0 chr9 99536865 99536887 -42734557 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr9 99537889 99537919 -42733525 + AT_rich Low_complexity Low_complexity 1 30 0 579 253 29 50 chr9 99538089 99538366 -42733078 + LTR4 LTR ERV1 318 588 -8 1644 142 8 4 chr9 99538366 99538613 -42732831 - AluSq SINE Alu -65 248 1 442 113 47 19 chr9 99538917 99539023 -42732421 + CT-rich Low_complexity Low_complexity 2 110 0 2052 142 20 0 chr9 99539045 99539347 -42732097 - AluSx SINE Alu -4 308 1 1472 193 0 30 chr9 99539766 99540062 -42731382 - AluJb SINE Alu -20 292 6 777 240 68 5 chr9 99540105 99540297 -42731147 + MIR SINE MIR 35 238 -24 222 341 47 0 chr9 99540530 99540615 -42730829 + MER91C DNA MER1_type 35 123 -17 2147 203 13 27 chr9 99541378 99541905 -42729539 + L1MB8 LINE L1 5653 6172 -6 408 313 54 0 chr9 99542981 99543128 -42728316 + L2 LINE L2 2722 2876 -438 759 213 81 35 chr9 99543917 99544175 -42727269 - L1MB8 LINE L1 -6 6172 5903 198 71 0 0 chr9 99545416 99545444 -42726000 + (CA)n Simple_repeat Simple_repeat 2 29 0 224 373 9 18 chr9 99546108 99546218 -42725226 - MIR3 SINE MIR -10 198 90 2322 95 7 0 chr9 99548135 99548430 -42723014 - AluSp SINE Alu -15 298 2 21 36 0 0 chr9 99548591 99548619 -42722825 + AT_rich Low_complexity Low_complexity 1 28 0 1529 231 27 0 chr9 99550314 99550609 -42720835 + AluJo SINE Alu 1 303 -9 212 208 0 21 chr9 99550806 99550854 -42720590 - L2 LINE L2 -5 3308 3262 1173 244 31 21 chr9 99551261 99551548 -42719896 - AluJo SINE Alu -11 291 2 753 250 0 6 chr9 99552040 99552204 -42719240 + MER58A DNA MER1_type 4 166 0 387 94 172 0 chr9 99552251 99552315 -42719129 + MER58A DNA MER1_type 150 224 0 623 320 128 10 chr9 99552398 99552618 -42718826 + MLT1L LTR MaLR 5 198 -417 2080 138 0 0 chr9 99552618 99552914 -42718530 + AluSc SINE Alu 1 296 -13 623 320 128 10 chr9 99552914 99553090 -42718354 + MLT1L LTR MaLR 198 448 -167 244 217 67 0 chr9 99553135 99553195 -42718249 + MLT1L LTR MaLR 546 609 -6 27 0 0 0 chr9 99554119 99554146 -42717298 + AT_rich Low_complexity Low_complexity 1 27 0 2126 121 10 0 chr9 99554212 99554509 -42716935 - AluSx SINE Alu -12 300 1 2073 207 9 11 chr9 99554876 99555311 -42716133 + Tigger2a DNA MER2_type 1 434 0 33 25 0 0 chr9 99555576 99555616 -42715828 + AT_rich Low_complexity Low_complexity 1 40 0 2167 130 0 0 chr9 99555650 99555949 -42715495 - AluSx SINE Alu -13 299 1 22 56 0 0 chr9 99556093 99556129 -42715315 + AT_rich Low_complexity Low_complexity 1 36 0 243 315 79 45 chr9 99556341 99556519 -42714925 + MIR SINE MIR 32 215 -47 27 0 0 0 chr9 99556726 99556753 -42714691 + AT_rich Low_complexity Low_complexity 1 27 0 478 235 0 0 chr9 99557215 99557317 -42714127 - U6 snRNA snRNA -4 103 2 22 0 0 0 chr9 99557430 99557452 -42713992 + AT_rich Low_complexity Low_complexity 1 22 0 2214 108 0 10 chr9 99557930 99558236 -42713208 + AluY SINE Alu 1 303 -8 421 208 109 0 chr9 99558593 99558694 -42712750 + FLAM_C SINE Alu 31 142 -1 282 116 0 0 chr9 99559549 99559592 -42711852 + (TAA)n Simple_repeat Simple_repeat 2 44 0 255 293 80 13 chr9 99565146 99565221 -42706223 + L2 LINE L2 3143 3222 -50 23 33 0 0 chr9 99565771 99565801 -42705643 + AT_rich Low_complexity Low_complexity 1 30 0 2164 126 0 0 chr9 99566036 99566329 -42705115 - AluY SINE Alu -18 293 1 395 307 84 0 chr9 99566667 99566897 -42704547 - MER102a DNA MER1_type -1 329 73 629 129 0 30 chr9 99567828 99567929 -42703515 - AluY SINE Alu -184 127 30 398 149 15 0 chr9 99567929 99567996 -42703448 - FLAM_A SINE Alu -65 68 1 181 330 29 48 chr9 99568037 99568140 -42703304 + MER5A DNA MER1_type 89 189 0 868 199 91 22 chr9 99568970 99569201 -42702243 + L1MD2 LINE L1 5905 6151 -208 276 315 36 12 chr9 99570670 99570835 -42700609 - L1 LINE L1 -2212 3934 3766 24 32 0 0 chr9 99571144 99571175 -42700269 + AT_rich Low_complexity Low_complexity 1 31 0 6144 126 21 22 chr9 99571567 99572537 -42698907 + LTR5 LTR ERVK 1 969 0 1774 179 20 7 chr9 99573059 99573356 -42698088 - AluJo SINE Alu -11 301 1 414 279 49 8 chr9 99574341 99574463 -42696981 + MIR SINE MIR 59 185 -77 362 190 56 84 chr9 99574885 99574992 -42696452 - L1MC/D LINE L1 -647 5517 5413 2027 143 3 0 chr9 99574992 99575285 -42696159 - AluSx SINE Alu -18 294 1 362 190 56 84 chr9 99575285 99575319 -42696125 - L1MC/D LINE L1 -751 5413 5380 1534 174 126 43 chr9 99575423 99575819 -42695625 + LTR32 LTR ERVL 36 464 -7 44 46 0 0 chr9 99575882 99575947 -42695497 + AT_rich Low_complexity Low_complexity 1 65 0 1038 258 75 82 chr9 99575986 99576733 -42694711 + L1M4 LINE L1 4050 4791 -1355 257 0 30 0 chr9 99577195 99577228 -42694216 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2112 70 7 0 chr9 99577230 99577503 -42693941 - AluSg SINE Alu -35 275 1 585 287 106 13 chr9 99578965 99579202 -42692242 - L2 LINE L2 -250 3063 2805 2033 130 0 17 chr9 99579438 99579731 -42691713 + AluSx SINE Alu 8 295 -17 1139 113 6 0 chr9 99579797 99579956 -42691488 - AluSg/x SINE Alu -19 293 134 506 242 103 21 chr9 99580070 99580264 -42691180 - MIR SINE MIR 0 262 53 1067 240 4 9 chr9 99580265 99580498 -42690946 - MIR SINE MIR 0 262 31 1314 106 22 6 chr9 99580499 99580678 -42690766 - AluSx SINE Alu -130 182 1 1419 220 72 56 chr9 99580683 99581238 -42690206 - L1ME3 LINE L1 -1 6161 5598 356 250 0 0 chr9 99581248 99581320 -42690124 + MER5A DNA MER1_type 4 75 -114 2294 105 0 7 chr9 99581337 99581641 -42689803 + AluSx SINE Alu 1 302 -10 729 137 7 101 chr9 99581712 99581851 -42689593 + AluJb SINE Alu 2 127 -185 512 165 31 79 chr9 99581963 99582028 -42689416 + MER5A DNA MER1_type 1 59 -130 1977 138 14 0 chr9 99582028 99582317 -42689127 - AluSx SINE Alu -19 293 1 512 165 31 79 chr9 99582317 99582378 -42689066 + MER5A DNA MER1_type 59 121 -68 655 298 54 16 chr9 99582955 99583197 -42688247 + MIR SINE MIR 2 252 -10 500 320 128 66 chr9 99583187 99583934 -42687510 - L2 LINE L2 -394 2920 2127 * 2331 95 3 0 chr9 99583944 99584238 -42687206 - AluSx SINE Alu -17 295 1 195 240 0 60 chr9 99584469 99584519 -42686925 - MIR SINE MIR -6 256 210 709 308 186 31 chr9 99584520 99584933 -42686511 + L2 LINE L2 2440 2916 -398 180 194 65 81 chr9 99585537 99585583 -42685861 - MIR SINE MIR -1 261 215 2385 98 0 0 chr9 99585583 99585889 -42685555 - AluSq SINE Alu -7 306 1 180 194 65 81 chr9 99585889 99585904 -42685540 - MIR SINE MIR -47 215 201 846 130 0 8 chr9 99586545 99586668 -42684776 + FLAM_C SINE Alu 6 127 -16 2135 117 3 0 chr9 99586735 99587026 -42684418 - AluSq SINE Alu -21 292 1 2621 48 0 6 chr9 99587299 99587611 -42683833 - AluSg SINE Alu 0 310 1 1441 290 22 12 chr9 99587722 99588392 -42683052 - L1M4 LINE L1 -2179 3967 3291 355 70 18 18 chr9 99588392 99588449 -42682995 - Alu SINE Alu -2 299 243 464 149 46 0 chr9 99588514 99588601 -42682843 - L1PB4 LINE L1 -445 5711 5621 727 105 26 0 chr9 99588609 99588723 -42682721 + L1PB4 LINE L1 5713 5829 -327 265 158 33 16 chr9 99588723 99588784 -42682660 + L1PA16 LINE L1 6096 6156 -7 2023 148 12 0 chr9 99588786 99589124 -42682320 + L1PB4 LINE L1 5813 6154 -2 1817 138 79 0 chr9 99589159 99589449 -42681995 - AluSq SINE Alu 0 313 1 2142 128 3 6 chr9 99589890 99590203 -42681241 - AluSx SINE Alu 0 312 1 1524 169 32 25 chr9 99590276 99590560 -42680884 + AluJo SINE Alu 1 286 -26 199 157 0 118 chr9 99590670 99590721 -42680723 + MER5B DNA MER1_type 111 155 -23 2334 88 0 10 chr9 99591292 99591597 -42679847 - AluSc SINE Alu -7 302 1 884 250 14 18 chr9 99592008 99592228 -42679216 + MER20 DNA MER1_type 1 219 0 1584 192 0 14 chr9 99592546 99592833 -42678611 - AluJb SINE Alu -16 296 14 1644 175 0 41 chr9 99592912 99593232 -42678212 - AluJo SINE Alu -5 307 1 2313 85 0 25 chr9 99593271 99593623 -42677821 - AluSg SINE Alu 0 344 1 22 64 5 0 chr9 99593942 99594040 -42677404 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr9 99594570 99594591 -42676853 + AT_rich Low_complexity Low_complexity 1 21 0 460 223 117 0 chr9 99594661 99594755 -42676689 + L2 LINE L2 3199 3303 -10 23 0 0 0 chr9 99594935 99594958 -42676486 + AT_rich Low_complexity Low_complexity 1 23 0 2195 82 0 14 chr9 99595081 99595375 -42676069 + AluSc SINE Alu 1 290 -19 1024 130 6 41 chr9 99596052 99596221 -42675223 - FRAM SINE Alu -17 159 1 1912 150 0 0 chr9 99596265 99596545 -42674899 + AluSx SINE Alu 17 296 -16 2035 123 3 10 chr9 99596754 99597047 -42674397 + AluSx SINE Alu 3 293 -19 211 214 18 54 chr9 99597180 99597236 -42674208 + MIR3 SINE MIR 144 197 -11 198 0 0 0 chr9 99597311 99597333 -42674111 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1925 147 0 3 chr9 99597333 99597619 -42673825 - AluSx SINE Alu -27 285 1 2249 105 0 3 chr9 99597951 99598246 -42673198 - AluSq SINE Alu -19 294 1 383 180 0 50 chr9 99598801 99598863 -42672581 - MER53 DNA DNA 0 189 132 2096 128 3 0 chr9 99598863 99599159 -42672285 - AluSx SINE Alu -15 297 1 383 180 0 50 chr9 99599159 99599196 -42672248 - MER53 DNA DNA -57 132 95 352 124 106 0 chr9 99599557 99599883 -42671561 + (TA)n Simple_repeat Simple_repeat 1 360 0 181 95 24 24 chr9 99599995 99600037 -42671407 + (TATATG)n Simple_repeat Simple_repeat 2 43 0 216 184 23 46 chr9 99600047 99600134 -42671310 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 283 210 97 0 chr9 99600289 99600413 -42671031 + (TATG)n Simple_repeat Simple_repeat 4 139 0 552 80 74 15 chr9 99600415 99600763 -42670681 + (TA)n Simple_repeat Simple_repeat 1 368 0 1879 101 65 14 chr9 99601557 99601834 -42669610 - AluSg SINE Alu -18 292 2 21 0 0 0 chr9 99602320 99602341 -42669103 + AT_rich Low_complexity Low_complexity 1 21 0 238 222 19 0 chr9 99602412 99602466 -42668978 - L1MC/D LINE L1 -1998 5810 5756 497 241 106 7 chr9 99602502 99602643 -42668801 - MIR SINE MIR -18 244 90 261 314 0 0 chr9 99602817 99602887 -42668557 - MIR SINE MIR -125 137 68 264 295 103 26 chr9 99602991 99603147 -42668297 + MIR SINE MIR 95 262 0 241 258 45 15 chr9 99603415 99603481 -42667963 + L2 LINE L2 3240 3307 -6 808 199 7 7 chr9 99604353 99604499 -42666945 - FRAM SINE Alu -30 146 1 1171 117 25 0 chr9 99605054 99605217 -42666227 + AluSg/x SINE Alu 125 291 -21 2138 99 61 0 chr9 99606020 99606314 -42665130 - AluSp SINE Alu -1 312 1 1902 156 0 7 chr9 99606641 99606942 -42664502 + AluJo SINE Alu 1 299 -13 270 232 14 29 chr9 99606942 99607011 -42664433 + L2 LINE L2 3246 3313 0 662 229 129 29 chr9 99607113 99607283 -42664161 - MER20 DNA MER1_type -2 217 31 253 286 12 60 chr9 99607394 99607478 -42663966 - L2 LINE L2 0 3272 3193 1313 140 50 140 chr9 99607829 99608230 -42663214 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr9 99608518 99608540 -42662904 + AT_rich Low_complexity Low_complexity 1 22 0 2399 149 42 11 chr9 99608892 99609347 -42662097 + L1MB3 LINE L1 5714 6182 -1 1870 146 3 33 chr9 99609352 99609653 -42661791 + AluJo SINE Alu 1 292 -20 2351 105 3 0 chr9 99610775 99611080 -42660364 + AluSx SINE Alu 1 306 -6 301 243 103 37 chr9 99611241 99611348 -42660096 - MIR3 SINE MIR 0 208 95 38 51 0 0 chr9 99611493 99611552 -42659892 + AT_rich Low_complexity Low_complexity 1 59 0 555 139 66 33 chr9 99611567 99611689 -42659755 - L1MA9 LINE L1 -35 6277 6152 2974 210 75 16 chr9 99611695 99612511 -42658933 - L1MC4a LINE L1 -1 7807 6944 425 79 63 0 chr9 99612513 99612576 -42658868 - MSTB LTR MaLR 0 426 360 673 96 0 0 chr9 99612576 99612670 -42658774 + AluS SINE Alu 1 94 -218 459 52 0 0 chr9 99612683 99612741 -42658703 + (TG)n Simple_repeat Simple_repeat 2 59 0 356 256 0 0 chr9 99612744 99612822 -42658622 - AluSg/x SINE Alu -38 264 187 2211 156 42 5 chr9 99612932 99613342 -42658102 + L1PB4 LINE L1 5731 6155 -1 425 171 234 86 chr9 99613342 99613517 -42657927 + L1MD1 LINE L1 6027 6227 -15 2184 108 0 0 chr9 99614018 99614305 -42657139 - AluSc SINE Alu -22 287 1 203 373 0 0 chr9 99614572 99614639 -42656805 + MIR3 SINE MIR 129 195 -13 23 33 0 0 chr9 99614835 99614865 -42656579 + AT_rich Low_complexity Low_complexity 1 30 0 26 82 0 0 chr9 99615452 99615513 -42655931 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr9 99615677 99615699 -42655745 + AT_rich Low_complexity Low_complexity 1 22 0 668 294 61 65 chr9 99615724 99616230 -42655214 + L1M4 LINE L1 4475 4978 -1168 234 272 71 27 chr9 99616350 99616534 -42654910 + L1M4 LINE L1 5201 5392 -754 1834 170 33 9 chr9 99617002 99617337 -42654107 - MER61A LTR ERV1 0 343 1 22876 98 45 16 chr9 99617337 99618895 -42652549 - MER61A-int LTR ERV1 0 5217 3706 2280 68 4 0 chr9 99618895 99619202 -42652242 + AluY SINE Alu 1 308 0 22876 98 45 16 chr9 99619202 99621148 -42650296 - MER61A-int LTR ERV1 -1511 3706 1655 912 224 53 26 chr9 99621146 99621450 -42649994 - MER61A-int LTR ERV1 -4905 312 1 * 752 150 29 43 chr9 99621450 99621590 -42649854 - MER61A LTR ERV1 0 343 206 1230 106 0 3 chr9 99621593 99621821 -42649623 + AluSq SINE Alu 6 300 -13 1036 171 33 14 chr9 99621830 99622040 -42649404 - MER61A LTR ERV1 -129 214 1 3125 143 6 2 chr9 99622054 99622545 -42648899 - LOR1a LTR ERV1 -4 493 1 187 344 195 13 chr9 99623246 99623400 -42648044 - L2 LINE L2 -575 2739 2558 477 350 51 12 chr9 99623479 99623810 -42647634 - MER20B DNA MER1_type -219 564 221 220 219 0 0 chr9 99623818 99623859 -42647585 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 398 290 77 53 chr9 99624587 99624794 -42646650 + MLT1J LTR MaLR 298 509 -2 3893 63 4 0 chr9 99626026 99626531 -42644913 + L1PA8 LINE L1 5653 6159 -13 244 47 0 70 chr9 99626571 99626614 -42644830 + L1PA8 LINE L1 6127 6166 -6 274 196 139 81 chr9 99626657 99626830 -42644614 + MLT1J LTR MaLR 6 188 -323 232 253 291 0 chr9 99627350 99627429 -42644015 + MIR SINE MIR 52 153 -109 29 47 0 0 chr9 99627501 99627544 -42643900 + AT_rich Low_complexity Low_complexity 1 43 0 222 277 35 35 chr9 99628658 99628799 -42642645 + (TCTCTG)n Simple_repeat Simple_repeat 4 144 0 196 239 22 0 chr9 99631203 99631249 -42640195 - L2 LINE L2 -3 3310 3264 264 309 128 55 chr9 99631317 99631627 -42639817 - L2 LINE L2 -100 3213 2868 2345 81 3 0 chr9 99631627 99631925 -42639519 + AluY SINE Alu 1 299 -12 264 309 128 55 chr9 99631925 99631996 -42639448 - L2 LINE L2 -445 2868 2804 196 342 13 13 chr9 99632108 99632184 -42639260 - L2 LINE L2 -1180 2134 2059 402 345 201 25 chr9 99632187 99633111 -42638333 - L2 LINE L2 -1479 1835 749 300 316 0 0 chr9 99633120 99633196 -42638248 - L2 LINE L2 -2 3311 3236 182 314 0 0 chr9 99633425 99633460 -42637984 - L2 LINE L2 -27 3245 3211 433 221 0 0 chr9 99633560 99633637 -42637807 - AluJ/FLAM SINE Alu -235 77 1 234 370 20 0 chr9 99633638 99633738 -42637706 + MIR3 SINE MIR 99 200 -8 1392 111 0 0 chr9 99634653 99634842 -42636602 - AluSg/x SINE Alu 0 310 121 1789 126 89 0 chr9 99634847 99635118 -42636326 - MER41C LTR ERV1 -259 295 1 2033 138 3 3 chr9 99635139 99635435 -42636009 + AluSx SINE Alu 1 296 -16 1158 113 15 47 chr9 99636948 99637200 -42634244 - MER1B DNA MER1_type -5 334 37 623 156 148 0 chr9 99637218 99637346 -42634098 + MER3 DNA MER1_type 58 204 -5 2057 119 32 0 chr9 99637793 99638078 -42633366 + AluSq SINE Alu 7 300 -13 677 233 22 118 chr9 99639491 99639762 -42631682 - MIR SINE MIR -10 252 8 462 294 35 18 chr9 99639813 99639983 -42631461 + MIR3 SINE MIR 30 202 -6 362 270 86 31 chr9 99640689 99640852 -42630592 + MIR SINE MIR 20 191 -71 353 312 41 63 chr9 99641072 99641293 -42630151 - L2 LINE L2 -153 3119 2904 266 217 89 100 chr9 99641735 99641915 -42629529 + MIR3 SINE MIR 24 201 -7 281 340 93 31 chr9 99642487 99642649 -42628795 + MIR SINE MIR 11 182 -80 293 82 20 0 chr9 99643275 99643324 -42628120 + (TC)n Simple_repeat Simple_repeat 1 50 0 217 233 0 0 chr9 99644076 99644119 -42627325 + CT-rich Low_complexity Low_complexity 2 44 0 2534 71 3 0 chr9 99644233 99644544 -42626900 - AluSq SINE Alu 0 313 2 4760 122 54 14 chr9 99644728 99645465 -42625979 + MER4E LTR ERV1 1 767 -12 468 300 113 41 chr9 99645997 99646234 -42625210 + MIR SINE MIR 4 254 -8 1483 195 14 7 chr9 99646235 99646527 -42624917 - AluJo SINE Alu -18 294 1 227 301 30 53 chr9 99646628 99646761 -42624683 + MER104 DNA Tc2 34 163 -17 2141 108 0 0 chr9 99646931 99647232 -42624212 + AluSg SINE Alu 3 303 0 21 57 0 0 chr9 99647958 99647993 -42623451 + AT_rich Low_complexity Low_complexity 1 35 0 455 278 62 6 chr9 99648269 99648445 -42622999 - L1ME LINE L1 -445 5676 5491 211 162 61 40 chr9 99648632 99648731 -42622713 + (TATAA)n Simple_repeat Simple_repeat 5 105 0 23 33 0 0 chr9 99648770 99648800 -42622644 + AT_rich Low_complexity Low_complexity 1 30 0 3298 78 0 51 chr9 99648826 99649298 -42622146 + LTR7 LTR ERV1 1 448 -2 9796 93 17 58 chr9 99649300 99650912 -42620532 + HERVH LTR ERV1 1 1546 -6167 * 11919 89 13 9 chr9 99650908 99652576 -42618868 + HERVH LTR ERV1 1318 2992 -4721 961 127 7 0 chr9 99652562 99652712 -42618732 + HERVH LTR ERV1 3140 3290 -4423 * 948 150 0 0 chr9 99652716 99652856 -42618588 + HERVH LTR ERV1 3505 3644 -4069 * 2685 154 0 0 chr9 99652855 99653265 -42618179 + HERVH LTR ERV1 4740 5149 -2564 2547 100 45 41 chr9 99653266 99653865 -42617579 + HERVH LTR ERV1 5600 7713 0 3402 66 0 70 chr9 99653865 99654347 -42617097 + LTR7 LTR ERV1 1 448 -2 382 283 116 112 chr9 99655855 99656760 -42614684 + L1MB4 LINE L1 649 1394 -5455 539 172 160 53 chr9 99657100 99657269 -42614175 + L1MA9 LINE L1 6126 6312 0 * 8187 232 60 21 chr9 99657255 99660770 -42610674 + L1MB4 LINE L1 3185 6842 -40 751 271 52 4 chr9 99660823 99661345 -42610099 - L1MEc LINE L1 -3261 2954 2248 1344 194 7 56 chr9 99661398 99661682 -42609762 - AluJo SINE Alu -30 282 13 428 262 102 10 chr9 99661694 99661900 -42609544 - L1MEc LINE L1 -4128 2268 2044 1737 124 12 8 chr9 99661900 99662150 -42609294 + AluSx SINE Alu 1 251 -61 21 0 0 0 chr9 99662710 99662731 -42608713 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 99663765 99663793 -42607651 + AT_rich Low_complexity Low_complexity 1 28 0 3405 120 13 29 chr9 99664498 99665024 -42606420 - LTR39 LTR ERV1 -264 519 2 457 186 0 12 chr9 99665029 99665115 -42606329 + MIR SINE MIR 84 168 -94 875 139 32 13 chr9 99665121 99665263 -42606181 - MER65C LTR ERV1 0 461 317 3360 154 43 52 chr9 99665263 99666102 -42605342 - LTR1 LTR ERV1 0 785 1 1389 215 39 10 chr9 99666102 99666414 -42605030 - MER65C LTR ERV1 -138 323 3 288 279 0 0 chr9 99666415 99666483 -42604961 + MIR SINE MIR 170 237 -25 432 237 21 0 chr9 99666484 99666581 -42604863 + MER5B DNA MER1_type 1 99 -79 342 211 0 0 chr9 99666620 99666683 -42604761 - AluJ/FRAM SINE Alu -2 300 238 1316 118 9 8 chr9 99666683 99667041 -42604403 + MER41B LTR ERV1 1 443 -192 669 171 0 0 chr9 99667141 99667252 -42604192 + MER52A LTR ERV1 1645 1755 0 957 146 12 0 chr9 99667252 99667416 -42604028 - L1P4 LINE L1 -422 5744 5579 * 1415 117 10 0 chr9 99667401 99667607 -42603837 + L1P4 LINE L1 5401 5608 -558 477 344 11 16 chr9 99667607 99667793 -42603651 + MER5A DNA MER1_type 5 189 0 2683 153 20 26 chr9 99668462 99668920 -42602524 + LTR32 LTR ERVL 17 471 0 589 188 34 0 chr9 99670312 99670429 -42601015 - MER45A DNA AcHobo -31 147 27 1850 123 37 0 chr9 99671613 99671882 -42599562 + AluSx SINE Alu 1 279 -33 1588 147 0 0 chr9 99672144 99672368 -42599076 - AluSx SINE Alu -88 224 1 991 153 53 37 chr9 99672700 99672890 -42598554 - AluJb SINE Alu -106 206 14 1298 175 5 18 chr9 99672988 99673211 -42598233 - AluJo SINE Alu -92 220 1 8076 170 17 15 chr9 99673211 99674241 -42597203 - L1 LINE L1 -815 6033 4997 2221 119 0 0 chr9 99674241 99674544 -42596900 - AluSx SINE Alu -9 303 1 8076 170 17 15 chr9 99674544 99675046 -42596398 - L1 LINE L1 -1851 4997 4498 694 172 47 68 chr9 99675223 99675415 -42596029 - pTR5 LTR ERV1 -1507 931 744 815 229 19 0 chr9 99675415 99675572 -42595872 - AluJb SINE Alu -151 161 2 1547 181 54 8 chr9 99675572 99675943 -42595501 - L1 LINE L1 -2837 4011 3624 1199 180 0 5 chr9 99675956 99676162 -42595282 - AluJo SINE Alu -54 258 54 1754 138 21 28 chr9 99676162 99676489 -42594955 - L1 LINE L1 -4588 2261 1937 2416 87 6 0 chr9 99676548 99676897 -42594547 - AluSp SINE Alu 0 351 1 271 309 68 37 chr9 99677075 99677101 -42594343 - MIR SINE MIR -56 206 182 5813 119 15 29 chr9 99677101 99677393 -42594051 - L1PA15 LINE L1 -8 6157 5863 2446 74 0 3 chr9 99677393 99677690 -42593754 - AluY SINE Alu -15 296 1 5813 119 15 29 chr9 99677690 99678543 -42592901 - L1PA15 LINE L1 -302 5863 5046 2242 117 0 0 chr9 99678543 99678843 -42592601 - AluSg SINE Alu -10 300 1 5813 119 15 29 chr9 99678843 99679064 -42592380 - L1PA15 LINE L1 -1119 5046 4824 271 309 68 37 chr9 99679064 99679228 -42592216 - MIR SINE MIR -80 182 10 246 263 125 0 chr9 99679213 99679293 -42592151 + MIR3 SINE MIR 101 190 -18 * 195 254 0 0 chr9 99679873 99679936 -42591508 + CT-rich Low_complexity Low_complexity 2 64 0 318 95 0 0 chr9 99680047 99680089 -42591355 - Alu SINE Alu -11 291 250 352 333 23 8 chr9 99680470 99680602 -42590842 - MIR SINE MIR -49 213 80 1971 118 198 6 chr9 99680602 99680941 -42590503 - MER4A LTR ERV1 0 664 261 620 134 21 10 chr9 99680941 99681038 -42590406 - MER4A LTR ERV1 -566 98 1 246 306 16 0 chr9 99681048 99681110 -42590334 - MIR SINE MIR -189 73 11 1804 236 39 70 chr9 99681478 99682009 -42589435 - MLT1K LTR MaLR 0 588 77 1732 178 10 3 chr9 99682009 99682312 -42589132 + AluJb SINE Alu 1 305 -7 1804 236 39 70 chr9 99682312 99682378 -42589066 - MLT1K LTR MaLR -511 77 10 221 226 87 87 chr9 99682378 99682493 -42588951 - MIR3 SINE MIR -36 172 58 1071 229 73 99 chr9 99682496 99683003 -42588441 - MLT1J LTR MaLR -7 504 11 233 197 30 0 chr9 99683705 99683771 -42587673 + (TTTAA)n Simple_repeat Simple_repeat 1 68 0 1212 259 94 25 chr9 99684077 99684483 -42586961 - MLT1J2 LTR MaLR 0 450 17 250 325 40 48 chr9 99684531 99684657 -42586787 - L2 LINE L2 -15 3257 3133 4819 114 9 21 chr9 99685834 99686590 -42584854 - L1MA8 LINE L1 -221 6070 5324 259 234 0 0 chr9 99686738 99686802 -42584642 + MIR SINE MIR 79 142 -66 1617 186 22 26 chr9 99687513 99687824 -42583620 - AluJo SINE Alu -2 310 1 6169 192 46 42 chr9 99687828 99688090 -42583354 - L1MB8 LINE L1 -6 6172 5912 1035 183 37 0 chr9 99688090 99688331 -42583113 - L1MA8 LINE L1 -3 6288 6039 6169 192 46 42 chr9 99688331 99690268 -42581176 - L1MB8 LINE L1 -266 5912 3983 234 0 0 0 chr9 99690268 99690294 -42581150 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1323 124 42 0 chr9 99690294 99690511 -42580933 - L1MA6 LINE L1 -9 6291 6066 6169 192 46 42 chr9 99690511 99690582 -42580862 - L1MB8 LINE L1 -2194 3984 3893 2834 16 0 0 chr9 99690595 99690899 -42580545 - AluYb8 SINE Alu -14 304 1 367 281 74 8 chr9 99691696 99691817 -42579627 - MIR SINE MIR -71 191 63 189 0 0 0 chr9 99692077 99692098 -42579346 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 360 111 0 0 chr9 99692097 99692151 -42579293 + (CA)n Simple_repeat Simple_repeat 1 54 0 840 206 18 0 chr9 99692908 99693126 -42578318 - Charlie5 DNA MER1_type 0 2620 2399 1993 133 7 20 chr9 99693414 99693857 -42577587 + AluJo SINE Alu 9 447 0 187 313 38 0 chr9 99695196 99695276 -42576168 - MIR SINE MIR -80 182 100 321 242 0 0 chr9 99695332 99695398 -42576046 + MIR SINE MIR 81 146 -62 349 308 103 6 chr9 99695434 99695590 -42575854 - MIR SINE MIR -79 183 13 275 279 0 0 chr9 99695868 99695936 -42575508 + MIR SINE MIR 78 145 -63 642 234 81 20 chr9 99696342 99696539 -42574905 + MIR SINE MIR 28 236 -26 454 322 39 10 chr9 99700469 99700674 -42570770 + MIR SINE MIR 52 262 0 273 326 0 41 chr9 99701016 99701114 -42570330 - L2 LINE L2 -177 3095 3002 2397 233 32 13 chr9 99701457 99702087 -42569357 + L1M4c LINE L1 1207 1848 -4536 211 239 60 30 chr9 99702286 99702353 -42569091 + MIR3 SINE MIR 90 158 -50 1195 268 94 16 chr9 99702400 99703127 -42568317 + L2 LINE L2 2535 3311 -2 189 316 0 0 chr9 99704943 99705000 -42566444 - L2 LINE L2 -213 3059 3003 4653 146 17 18 chr9 99705994 99706810 -42564634 - L1MB3 LINE L1 -2 6181 5367 3323 203 35 15 chr9 99707314 99707690 -42563754 + L1ME1 LINE L1 5191 5558 -608 2191 115 3 7 chr9 99707690 99707994 -42563450 - AluSx SINE Alu -9 303 1 3323 203 35 15 chr9 99707994 99708423 -42563021 + L1ME1 LINE L1 5558 6019 -147 333 135 0 135 chr9 99708484 99708602 -42562842 - L1MB5 LINE L1 -134 6032 5937 545 260 31 10 chr9 99708572 99708594 -42562850 - L1MA1 LINE L1 -403 5899 5878 1121 198 16 8 chr9 99708594 99708836 -42562608 - L1ME1 LINE L1 -294 5872 5629 316 345 70 7 chr9 99708876 99709018 -42562426 - MIR SINE MIR -111 151 1 2108 118 0 0 chr9 99710722 99711001 -42560443 - AluSg SINE Alu -31 279 1 1742 163 34 3 chr9 99711126 99711420 -42560024 + AluJb SINE Alu 9 311 -1 2838 120 31 54 chr9 99711420 99711902 -42559542 + Tigger3(Golem) DNA MER2_type 2558 3028 -1 192 40 0 0 chr9 99712035 99712060 -42559384 + (TG)n Simple_repeat Simple_repeat 2 26 0 2123 133 27 0 chr9 99712062 99712399 -42559045 - MER7A DNA MER2_type -1 345 2 488 201 29 14 chr9 99712416 99712555 -42558889 - L1ME1 LINE L1 -9 6157 6017 5935 235 65 29 chr9 99712615 99713314 -42558130 + L1MEc LINE L1 1975 2647 -3568 2145 131 7 7 chr9 99713314 99713619 -42557825 + AluSx SINE Alu 1 305 -7 5935 235 65 29 chr9 99713619 99715139 -42556305 + L1MEc LINE L1 2647 4219 -1996 1045 206 72 44 chr9 99715138 99715263 -42556181 + L1MEc LINE L1 4796 4916 -1299 * 2129 116 10 10 chr9 99715263 99715556 -42555888 - AluSx SINE Alu -19 293 1 1045 206 72 44 chr9 99715556 99715751 -42555693 + L1MEc LINE L1 4916 5125 -1090 2005 237 31 20 chr9 99715852 99716526 -42554918 + L1ME3A LINE L1 2117 2805 -3577 1962 158 0 34 chr9 99716526 99716848 -42554596 - AluJb SINE Alu -1 311 1 2005 237 31 20 chr9 99716848 99717064 -42554380 + L1ME3A LINE L1 2805 3017 -3365 330 228 22 33 chr9 99717297 99717389 -42554055 - MER65B LTR ERV1 -440 91 1 5480 148 13 62 chr9 99717392 99718374 -42553070 - ERVL-B2 LTR ERVL -2121 3643 2710 2323 169 25 13 chr9 99718367 99718764 -42552680 - ERVL-B2 LTR ERVL -3723 2041 1640 * 550 240 0 0 chr9 99718764 99718868 -42552576 - MLT2B2 LTR ERVL -106 409 306 7861 198 58 10 chr9 99718871 99720434 -42551010 - ERVL-B2 LTR ERVL -4124 1640 2 2880 167 9 43 chr9 99720435 99720968 -42550476 - MLT2B2 LTR ERVL 0 515 1 2741 260 66 15 chr9 99721093 99722184 -42549260 + L1ME3A LINE L1 4939 6117 -289 1879 166 10 7 chr9 99722184 99722479 -42548965 + AluJo SINE Alu 1 296 -16 2741 260 66 15 chr9 99722479 99722772 -42548672 + L1ME3A LINE L1 6117 6394 -12 268 306 100 0 chr9 99722840 99722981 -42548463 + MIR SINE MIR 37 189 -63 253 241 95 17 chr9 99723371 99723487 -42547957 + L1ME4a LINE L1 5996 6120 -1 476 282 16 27 chr9 99726126 99726314 -42545130 - L1ME4a LINE L1 -244 5877 5692 240 318 141 0 chr9 99729876 99730046 -42541398 + MIR SINE MIR 1 194 -68 193 225 62 50 chr9 99731134 99731214 -42540230 + MIR SINE MIR 56 136 -72 499 171 23 0 chr9 99733001 99733089 -42538355 - Tigger5 DNA MER2_type -1 2322 2233 360 169 26 65 chr9 99733073 99733150 -42538294 - Tigger5 DNA MER2_type -2249 74 1 * 209 229 119 9 chr9 99733364 99733473 -42537971 - MIR SINE MIR -70 192 72 298 250 146 28 chr9 99733564 99733708 -42537736 + MER20B DNA MER1_type 23 183 -600 336 245 115 7 chr9 99734485 99734624 -42536820 - L1ME4a LINE L1 -41 6080 5927 218 306 89 6 chr9 99734921 99735078 -42536366 + MIR SINE MIR 81 250 -12 463 317 11 6 chr9 99735111 99735294 -42536150 - MIR SINE MIR -12 250 67 248 265 15 0 chr9 99735363 99735431 -42536013 + CT-rich Low_complexity Low_complexity 4 72 0 1303 86 11 0 chr9 99736284 99736459 -42534985 + L1PA10 LINE L1 5988 6164 -4 2386 104 20 3 chr9 99736481 99736826 -42534618 - L1PA15 LINE L1 -6 6159 5809 275 280 42 42 chr9 99736910 99737028 -42534416 - L1ME4a LINE L1 -402 5719 5602 385 195 31 102 chr9 99737684 99737812 -42533632 + MIR SINE MIR 60 178 -84 320 241 43 35 chr9 99737922 99738015 -42533429 + MER58A DNA MER1_type 47 143 -198 2423 159 31 26 chr9 99738015 99738431 -42533013 + MER47B DNA MER2_type 1 418 0 320 241 43 35 chr9 99738431 99738453 -42532991 + MER58A DNA MER1_type 143 163 -61 472 269 21 15 chr9 99738513 99738667 -42532777 - MIR SINE MIR -84 178 26 240 250 207 9 chr9 99740083 99740199 -42531245 + L2 LINE L2 2907 3045 -227 1362 229 37 6 chr9 99741202 99741530 -42529914 - MER58B DNA MER1_type -3 338 1 235 243 14 0 chr9 99742198 99742268 -42529176 + L1M4 LINE L1 4967 5037 -1109 1698 128 0 0 chr9 99743912 99744161 -42527283 + AluSx SINE Alu 49 297 -15 363 305 130 48 chr9 99744198 99744552 -42526892 - L1ME4a LINE L1 -109 6012 5630 204 281 47 0 chr9 99744602 99744666 -42526778 + MIR3 SINE MIR 89 155 -53 281 185 0 0 chr9 99744799 99744853 -42526591 + L1ME4a LINE L1 6065 6118 -3 446 324 35 0 chr9 99746229 99746371 -42525073 - MIR SINE MIR -101 161 15 2404 63 3 0 chr9 99746764 99747067 -42524377 + AluY SINE Alu 1 304 -7 402 167 0 0 chr9 99747626 99747710 -42523734 + GA-rich Low_complexity Low_complexity 3 86 0 10371 170 27 22 chr9 99747901 99750738 -42520706 - L1PA15 LINE L1 -13 6152 3285 1265 126 0 0 chr9 99750795 99750977 -42520467 - AluSg/x SINE Alu -10 302 121 252 283 78 68 chr9 99751015 99751220 -42520224 - MIR SINE MIR 0 262 56 505 301 96 17 chr9 99751262 99751501 -42519943 - MIR SINE MIR -3 259 2 39882 73 11 7 chr9 99752160 99757346 -42514098 - L1PA6 LINE L1 -3 6151 937 8181 60 5 5 chr9 99757346 99758353 -42513091 + LTR13 LTR ERVK 1 1007 0 39882 73 11 7 chr9 99758353 99759284 -42512160 - L1PA6 LINE L1 -5217 937 11 1011 178 167 4 chr9 99759297 99759555 -42511889 - AluSq SINE Alu -3 300 1 733 249 115 14 chr9 99759944 99760161 -42511283 - MER102b DNA MER1_type 0 341 103 602 265 36 32 chr9 99761450 99761669 -42509775 - MIR SINE MIR -37 225 6 2227 236 86 39 chr9 99761723 99762579 -42508865 - L1ME3A LINE L1 -12 6158 5262 1024 147 0 0 chr9 99762579 99762736 -42508708 + AluSg/x SINE Alu 135 291 -21 868 263 67 27 chr9 99762741 99763114 -42508330 - L1ME3A LINE L1 -873 5273 4886 642 221 98 31 chr9 99763131 99763385 -42508059 - L1ME3A LINE L1 -1334 4812 4542 611 226 166 52 chr9 99763482 99763603 -42507841 + L1MC/D LINE L1 5261 5367 -992 1361 156 160 8 chr9 99763603 99763853 -42507591 - AluJo SINE Alu -14 288 1 611 226 166 52 chr9 99763853 99764085 -42507359 + L1MC/D LINE L1 5367 5659 -700 238 326 0 0 chr9 99764107 99764193 -42507251 + L1MC/D LINE L1 5742 5827 -1981 212 313 97 3 chr9 99764819 99764926 -42506518 + MIR SINE MIR 40 159 -49 195 288 110 0 chr9 99765445 99765518 -42505926 - MIR SINE MIR -71 137 57 1901 119 0 7 chr9 99765717 99766034 -42505410 + AluSx SINE Alu 2 316 0 1212 195 130 15 chr9 99766036 99766436 -42505008 - LTR48 LTR ERV1 -50 736 141 22 88 0 0 chr9 99766548 99766605 -42504839 + AT_rich Low_complexity Low_complexity 1 57 0 368 355 24 6 chr9 99766649 99766815 -42504629 - L1MEc LINE L1 -5197 1113 945 335 234 0 0 chr9 99766822 99766886 -42504558 - L1MC4 LINE L1 -1339 6703 6640 1948 130 0 0 chr9 99766899 99767184 -42504260 - AluSx SINE Alu -27 285 1 860 301 47 36 chr9 99767184 99767644 -42503800 - L1MEc LINE L1 -5193 926 459 1468 172 70 3 chr9 99767880 99768165 -42503279 - AluJb SINE Alu -7 305 2 2092 127 0 3 chr9 99769035 99769343 -42502101 - AluJo SINE Alu -5 307 1 673 319 50 4 chr9 99769357 99769595 -42501849 - MIR SINE MIR 0 262 14 316 339 40 0 chr9 99770282 99770406 -42501038 + MIR SINE MIR 120 248 -14 279 243 96 22 chr9 99770652 99770788 -42500656 - L1ME4a LINE L1 -14 6107 5962 320 292 192 24 chr9 99770856 99771106 -42500338 - L1ME4a LINE L1 -276 5845 5554 2210 102 3 3 chr9 99772005 99772309 -42499135 - AluSx SINE Alu -8 304 1 322 295 67 9 chr9 99773502 99773607 -42497837 - MIR3 SINE MIR -9 199 89 279 387 8 8 chr9 99775281 99775400 -42496044 + L2 LINE L2 3134 3252 -20 180 111 0 0 chr9 99775412 99775439 -42496005 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 211 328 13 4 chr9 99775454 99775560 -42495884 - MIR SINE MIR -64 144 37 183 246 88 0 chr9 99775906 99775963 -42495481 + MIR SINE MIR 85 146 -62 2299 214 44 15 chr9 99776910 99777451 -42493993 - MER89 LTR ERV1 0 559 3 851 168 38 16 chr9 99777482 99777667 -42493777 - MER53 DNA DNA 0 189 1 256 286 98 101 chr9 99778814 99778909 -42492535 - L2 LINE L2 -2 3270 3176 1317 197 140 33 chr9 99778909 99779244 -42492200 - MER93b LTR ERV1 0 373 3 256 286 98 101 chr9 99779244 99779505 -42491939 - L2 LINE L2 -96 3176 2915 239 296 136 76 chr9 99779870 99780002 -42491442 - L2 LINE L2 0 3272 3133 1437 181 143 12 chr9 99781001 99781394 -42490050 - L1MB8 LINE L1 -1 6177 5737 492 250 25 69 chr9 99781415 99781498 -42489946 + MIR SINE MIR 37 111 -151 2138 118 0 22 chr9 99781498 99781812 -42489632 - AluSx SINE Alu -5 307 1 492 250 25 69 chr9 99781812 99781888 -42489556 + MIR SINE MIR 111 189 -73 1264 266 74 110 chr9 99782323 99783441 -42488003 + L1MEd LINE L1 125 1202 -4917 534 16 0 0 chr9 99783522 99783585 -42487859 + (TTATG)n Simple_repeat Simple_repeat 3 65 0 1478 152 80 8 chr9 99783585 99783848 -42487596 - AluJo SINE Alu -30 282 1 2768 6 0 3 chr9 99785058 99785371 -42486073 - AluYb8 SINE Alu -6 312 1 739 312 85 20 chr9 99786141 99786686 -42484758 + L1MC4a LINE L1 5186 5640 -481 1337 183 10 61 chr9 99786686 99786998 -42484446 + AluJb SINE Alu 1 296 -16 739 312 85 20 chr9 99786998 99787111 -42484333 + L1MC4a LINE L1 5640 5744 -377 229 322 68 0 chr9 99787433 99787579 -42483865 - L1ME4a LINE L1 -5 6116 5961 249 313 154 20 chr9 99787696 99787897 -42483547 - L1ME4a LINE L1 -297 5824 5597 318 249 360 26 chr9 99788810 99788999 -42482445 + MIR SINE MIR 4 255 -7 182 171 29 0 chr9 99789279 99789314 -42482130 - MIR SINE MIR -76 132 97 530 205 131 54 chr9 99790101 99790272 -42481172 - MIR SINE MIR -46 216 35 403 258 81 25 chr9 99790571 99790730 -42480714 + MIR SINE MIR 3 168 -40 241 231 0 15 chr9 99791041 99791106 -42480338 + CT-rich Low_complexity Low_complexity 2 65 0 269 247 134 10 chr9 99791109 99791206 -42480238 - L2 LINE L2 -31 3241 3133 629 94 0 0 chr9 99792017 99792102 -42479342 + AluS SINE Alu 1 85 -227 1147 125 0 0 chr9 99792202 99792370 -42479074 + AluSg/x SINE Alu 136 303 -7 2259 160 37 57 chr9 99792370 99792969 -42478475 - L1ME4a LINE L1 -564 5614 5037 2261 103 0 3 chr9 99792969 99793281 -42478163 - AluSx SINE Alu -1 311 1 2259 160 37 57 chr9 99793281 99793449 -42477995 - L1ME4a LINE L1 -1141 5037 4867 3907 204 65 29 chr9 99793449 99794268 -42477176 + MER21B LTR ERV1 1 848 -15 1136 222 8 86 chr9 99794286 99794598 -42476846 - L1 LINE L1 -1970 4176 3894 2224 87 3 0 chr9 99794598 99794884 -42476560 + AluSx SINE Alu 12 298 -14 1136 222 8 86 chr9 99794884 99794931 -42476513 - L1 LINE L1 -2252 3894 3845 652 289 90 40 chr9 99794985 99795331 -42476113 - LTR24B LTR ERV1 -7 569 207 363 215 49 18 chr9 99795369 99795467 -42475977 - LTR24B LTR ERV1 -367 98 1 1135 214 84 20 chr9 99795750 99796106 -42475338 + L1MDb LINE L1 942 1320 -5089 2534 188 73 40 chr9 99796252 99796430 -42475014 + MER21B LTR ERV1 300 470 -393 2114 107 7 0 chr9 99796430 99796728 -42474716 + AluSc SINE Alu 1 300 -9 2534 188 73 40 chr9 99796728 99797080 -42474364 + MER21B LTR ERV1 470 848 -15 365 278 42 28 chr9 99798810 99798969 -42472475 - MIR3 SINE MIR -41 167 2 242 286 66 11 chr9 99799550 99799641 -42471803 + L2 LINE L2 2966 3061 -211 322 194 30 0 chr9 99801400 99801467 -42469977 - MIR SINE MIR -58 150 82 2084 91 74 44 chr9 99803582 99803921 -42467523 - THE1B LTR MaLR -2 362 14 286 331 14 36 chr9 99804399 99804538 -42466906 - MIR SINE MIR -70 192 57 289 148 19 0 chr9 99805637 99805691 -42465753 + L2 LINE L2 3258 3312 -1 459 309 25 6 chr9 99805944 99806106 -42465338 - MIR SINE MIR -35 227 63 274 224 52 0 chr9 99806534 99806612 -42464832 - MIR SINE MIR -62 146 60 190 184 41 20 chr9 99806571 99806620 -42464824 - L2 LINE L2 -1340 1974 1925 * 1641 164 123 38 chr9 99806762 99807127 -42464317 + MSTD LTR MaLR 1 396 0 302 366 17 6 chr9 99807415 99807590 -42463854 + L1MC/D LINE L1 5455 5631 -2177 1207 145 26 0 chr9 99807625 99807818 -42463626 + MLT1B LTR MaLR 1 198 -192 609 144 0 0 chr9 99807820 99807917 -42463527 + AluSg/x SINE Alu 208 304 -8 1066 141 27 0 chr9 99807934 99808118 -42463326 + MLT1B LTR MaLR 192 380 -10 341 315 49 38 chr9 99809702 99809928 -42461516 + MIR SINE MIR 17 244 -18 280 174 258 47 chr9 99809967 99810083 -42461361 + MIR3 SINE MIR 23 162 -46 191 317 73 37 chr9 99810024 99810188 -42461256 + L2 LINE L2 2642 2811 -503 * 234 226 167 10 chr9 99810206 99810308 -42461136 + MLT1E LTR MaLR 30 147 -446 1698 208 11 14 chr9 99810308 99810674 -42460770 - MLT1A1 LTR MaLR 0 365 1 903 221 124 71 chr9 99810765 99811104 -42460340 + MLT1E LTR MaLR 177 559 -34 317 299 153 62 chr9 99811137 99811224 -42460220 + L2 LINE L2 2807 2885 -428 2151 128 0 0 chr9 99811224 99811551 -42459893 - AluSx SINE Alu 0 312 1 317 299 153 62 chr9 99811551 99811928 -42459516 + L2 LINE L2 2885 3313 0 432 307 46 52 chr9 99813318 99813471 -42457973 - MLT1K LTR MaLR -423 165 14 252 259 19 0 chr9 99813541 99813595 -42457849 - MIR SINE MIR -90 118 64 3285 68 2 2 chr9 99813656 99814054 -42457390 - MLT2A1 LTR ERVL 0 444 47 677 227 88 86 chr9 99814129 99814468 -42456976 - MLT1J LTR MaLR -165 346 7 1964 184 14 6 chr9 99814902 99815261 -42456183 - MLT1A1 LTR MaLR -3 362 1 830 185 0 0 chr9 99815503 99815633 -42455811 + FLAM_C SINE Alu 2 131 -2 1106 202 64 40 chr9 99815651 99815779 -42455665 - L1M4c LINE L1 -4213 2171 2048 1579 162 3 52 chr9 99815779 99816088 -42455356 - AluJo SINE Alu -18 294 1 1106 202 64 40 chr9 99816088 99816411 -42455033 - L1M4c LINE L1 -4336 2048 1624 1092 260 78 13 chr9 99816517 99817122 -42454322 - L1M4c LINE L1 -5311 969 290 375 23 0 0 chr9 99817158 99817202 -42454242 + (CA)n Simple_repeat Simple_repeat 1 44 0 373 185 0 25 chr9 99817784 99817865 -42453579 - MER20B DNA MER1_type -16 767 689 295 191 0 0 chr9 99817874 99817937 -42453507 - MER20B DNA MER1_type -459 324 262 307 176 46 83 chr9 99818023 99818131 -42453313 - MER20B DNA MER1_type -655 128 25 195 42 0 0 chr9 99819058 99819082 -42452362 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3601 221 26 24 chr9 99820826 99821678 -42449766 + L1ME1 LINE L1 5323 6334 0 1738 206 49 3 chr9 99821950 99822299 -42449145 - MLT1A1 LTR MaLR 0 365 1 770 249 8 2 chr9 99822665 99822851 -42448593 - L1ME1 LINE L1 -363 5793 5604 * 1203 185 66 82 chr9 99822850 99823257 -42448187 + L1ME1 LINE L1 5776 6334 0 599 316 103 19 chr9 99823657 99823967 -42447477 - L2 LINE L2 -8 3305 2970 297 109 0 0 chr9 99824286 99824332 -42447112 + (CGGGG)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr9 99824389 99824413 -42447031 + GC_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr9 99825362 99825382 -42446062 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 328 326 74 0 chr9 99825559 99825694 -42445750 + MIR SINE MIR 4 148 -114 225 339 0 0 chr9 99825904 99825963 -42445481 - L2 LINE L2 -10 3262 3204 278 312 152 32 chr9 99826730 99826855 -42444589 - MIR3 SINE MIR -31 177 38 305 278 43 43 chr9 99827160 99827275 -42444169 + MIR3 SINE MIR 88 202 -6 419 103 0 29 chr9 99828081 99828149 -42443295 - Tigger3(Golem) DNA MER2_type -687 2342 2277 * 615 215 0 0 chr9 99828140 99828247 -42443197 - Tigger3(Golem) DNA MER2_type -2921 108 2 554 167 303 12 chr9 99828439 99828601 -42442843 - MER3 DNA MER1_type 0 209 1 346 319 149 56 chr9 99828806 99829774 -42441670 + L2 LINE L2 2004 3079 -193 274 314 0 0 chr9 99830500 99830570 -42440874 + L2 LINE L2 1877 1946 -1368 24 53 0 0 chr9 99831112 99831150 -42440294 + AT_rich Low_complexity Low_complexity 1 38 0 180 176 0 0 chr9 99831299 99831333 -42440111 + L2 LINE L2 3280 3313 0 443 266 56 33 chr9 99831380 99831594 -42439850 - L1ME LINE L1 -336 5785 5567 181 324 162 36 chr9 99831859 99831970 -42439474 - MIR3 SINE MIR -39 169 45 286 246 262 16 chr9 99831971 99832097 -42439347 + MIR SINE MIR 4 160 -102 367 337 50 39 chr9 99834102 99834283 -42437161 + MIR3 SINE MIR 23 205 -3 814 260 27 5 chr9 99834290 99834509 -42436935 + MER58A DNA MER1_type 1 224 0 38 51 0 0 chr9 99834743 99834802 -42436642 + AT_rich Low_complexity Low_complexity 1 59 0 5547 126 54 24 chr9 99834921 99836088 -42435356 + L1MA8 LINE L1 5088 6285 -6 3453 196 72 7 chr9 99836064 99836790 -42434654 + L1MD2 LINE L1 5575 6347 -12 * 1572 186 7 20 chr9 99836804 99837100 -42434344 + AluJo SINE Alu 1 292 -20 368 315 110 30 chr9 99837569 99838416 -42433028 - L1MC/D LINE L1 -753 5393 4738 1634 260 121 20 chr9 99838545 99839083 -42432361 - MLT1E LTR MaLR 0 593 2 292 353 69 0 chr9 99839084 99839200 -42432244 + L2 LINE L2 3136 3259 -13 244 282 242 16 chr9 99839916 99840040 -42431404 - L2 LINE L2 0 3272 3121 26 0 0 0 chr9 99840099 99840125 -42431319 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr9 99840547 99840585 -42430859 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr9 99840659 99840696 -42430748 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr9 99843093 99843125 -42428319 + AT_rich Low_complexity Low_complexity 1 32 0 27 62 0 0 chr9 99843783 99843831 -42427613 + AT_rich Low_complexity Low_complexity 1 48 0 2084 118 3 10 chr9 99844249 99844554 -42426890 - AluSq SINE Alu -10 303 1 183 167 0 0 chr9 99844949 99844991 -42426453 + (CAGTT)n Simple_repeat Simple_repeat 4 45 0 389 118 15 0 chr9 99845168 99845236 -42426208 - L1PA16 LINE L1 -1 6165 6097 201 154 0 26 chr9 99896330 99896369 -42375075 + (CAGGC)n Simple_repeat Simple_repeat 1 38 0 227 230 33 59 chr9 99897168 99897320 -42374124 - L2 LINE L2 -227 3045 2898 1106 256 87 64 chr9 99898392 99898889 -42372555 + MLT1J LTR MaLR 2 509 -2 436 267 69 0 chr9 99899121 99899252 -42372192 - MER91C DNA MER1_type 0 140 1 238 242 15 0 chr9 99899327 99899393 -42372051 - MIR SINE MIR -11 251 185 782 247 104 73 chr9 99899454 99899890 -42371554 + Charlie8 DNA MER1_type 1 431 -1986 281 272 62 93 chr9 99900292 99900352 -42371092 + L1ME3A LINE L1 4957 5017 -1129 1935 133 65 0 chr9 99900352 99900645 -42370799 + AluJb SINE Alu 1 312 0 281 272 62 93 chr9 99900645 99900665 -42370779 + L1ME3A LINE L1 5017 5036 -1110 1649 163 9 49 chr9 99900665 99900990 -42370454 + AluJo SINE Alu 1 312 0 281 272 62 93 chr9 99900990 99901165 -42370279 + L1ME3A LINE L1 5036 5205 -941 1106 248 218 19 chr9 99901232 99901901 -42369543 + L1ME3A LINE L1 5318 6119 -51 198 0 0 0 chr9 99902293 99902315 -42369129 + (A)n Simple_repeat Simple_repeat 1 22 0 189 291 0 0 chr9 99902504 99902590 -42368854 + (TG)n Simple_repeat Simple_repeat 2 87 0 194 224 35 35 chr9 99903029 99903087 -42368357 + L2 LINE L2 3215 3272 0 348 252 130 0 chr9 99903263 99903386 -42368058 + MER102b DNA MER1_type 154 292 -49 2071 110 0 34 chr9 99903945 99904261 -42367183 + AluSg SINE Alu 1 306 0 256 214 0 18 chr9 99904390 99904446 -42366998 + L2 LINE L2 3216 3270 -2 284 146 0 0 chr9 99904692 99904733 -42366711 - MER3 DNA MER1_type -110 99 59 327 247 0 22 chr9 99904744 99904833 -42366611 - L1MC5 LINE L1 -626 7335 7249 2079 134 7 0 chr9 99905125 99905416 -42366028 - AluSx SINE Alu -17 295 3 1971 129 7 11 chr9 99905581 99905867 -42365577 - AluSx SINE Alu -23 289 5 1853 136 62 4 chr9 99905877 99906150 -42365294 - AluSx SINE Alu -23 289 1 1359 148 0 5 chr9 99906599 99906802 -42364642 - AluJo SINE Alu -24 288 87 212 286 14 14 chr9 99909201 99909271 -42362173 + MIR3 SINE MIR 15 84 -124 1882 211 34 34 chr9 99909354 99909780 -42361664 + Charlie4a DNA MER1_type 4 432 -1529 1644 165 36 4 chr9 99909780 99910059 -42361385 + AluJb SINE Alu 1 288 -24 1882 211 34 34 chr9 99910059 99910134 -42361310 + Charlie4a DNA MER1_type 431 505 -3 749 165 147 41 chr9 99911780 99911809 -42359635 + MER58A DNA MER1_type 37 62 -2358 1310 193 13 4 chr9 99911809 99912042 -42359402 + MER8 DNA MER2_type 5 239 0 749 165 147 41 chr9 99912042 99912182 -42359262 + MER58A DNA MER1_type 62 224 0 270 324 21 10 chr9 99915329 99915428 -42356016 - MIR SINE MIR -63 145 55 2266 104 3 3 chr9 99915428 99915727 -42355717 - AluSx SINE Alu -13 299 1 270 324 21 10 chr9 99915727 99915747 -42355697 - MIR SINE MIR -153 55 37 2416 88 0 3 chr9 99916058 99916363 -42355081 - AluSc SINE Alu -5 304 1 313 298 66 11 chr9 99916422 99916563 -42354881 - MIR3 SINE MIR -61 147 15 672 282 47 17 chr9 99917148 99917382 -42354062 + MIR SINE MIR 22 262 0 2317 94 16 3 chr9 99917681 99917989 -42353455 - AluSq SINE Alu -1 312 1 3088 154 71 37 chr9 99918035 99918685 -42352759 + L1MA7 LINE L1 5620 6291 0 231 221 90 41 chr9 99919768 99919890 -42351554 + L2 LINE L2 2894 3021 -251 200 260 0 0 chr9 99920220 99920270 -42351174 + L2 LINE L2 3212 3261 -11 243 316 18 18 chr9 99920449 99920563 -42350881 - L3 LINE CR1 -2 1575 1462 1885 137 28 11 chr9 99922750 99923035 -42348409 + AluSx SINE Alu 1 290 -22 364 298 113 7 chr9 99923536 99923687 -42347757 + L1ME LINE L1 5535 5701 -420 338 214 83 0 chr9 99924708 99924792 -42346652 - MIR SINE MIR -113 149 59 607 249 119 11 chr9 99925090 99925267 -42346177 + MER3 DNA MER1_type 13 208 -1 299 196 0 0 chr9 99925225 99925276 -42346168 - MER3 DNA MER1_type -119 90 40 * 397 266 35 35 chr9 99925298 99925441 -42346003 + MIR SINE MIR 31 173 -89 1696 158 177 49 chr9 99926875 99927260 -42344184 + Tigger2a DNA MER2_type 1 434 0 632 245 54 0 chr9 99927483 99927667 -42343777 + MIR SINE MIR 39 232 -30 329 363 14 19 chr9 99927670 99927885 -42343559 - HAL1b LINE L1 -759 589 376 1962 144 7 3 chr9 99928779 99929070 -42342374 - AluSx SINE Alu -20 292 1 2358 91 0 3 chr9 99929401 99929699 -42341745 - AluSc SINE Alu -12 297 1 313 298 66 11 chr9 99929758 99929899 -42341545 - MIR3 SINE MIR -61 147 15 672 282 47 17 chr9 99930484 99930718 -42340726 + MIR SINE MIR 22 262 0 2317 94 16 3 chr9 99931017 99931325 -42340119 - AluSq SINE Alu -1 312 1 3119 153 71 35 chr9 99931371 99932020 -42339424 + L1MA7 LINE L1 5620 6291 0 231 221 90 41 chr9 99933104 99933226 -42338218 + L2 LINE L2 2894 3021 -251 200 260 0 0 chr9 99933556 99933606 -42337838 + L2 LINE L2 3212 3261 -11 225 325 18 18 chr9 99933785 99933899 -42337545 - L3 LINE CR1 -2 1575 1462 25 0 0 0 chr9 99935075 99935100 -42336344 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr9 99935835 99935861 -42335583 + AT_rich Low_complexity Low_complexity 1 26 0 212 336 131 0 chr9 99935933 99936040 -42335404 - MIR3 SINE MIR -54 154 34 599 262 0 7 chr9 99936146 99936287 -42335157 + MER5B DNA MER1_type 36 175 -3 309 311 0 50 chr9 99936288 99936407 -42335037 - MIR3 SINE MIR -51 157 45 261 239 107 73 chr9 99936528 99936589 -42334855 + HAL1b LINE L1 1257 1022 -326 2014 136 0 16 chr9 99936589 99936906 -42334538 + AluSx SINE Alu 1 312 0 261 239 107 73 chr9 99936906 99937236 -42334208 + HAL1b LINE L1 1021 1338 -10 1129 213 38 42 chr9 99937285 99937536 -42333908 + L1M4 LINE L1 4023 4274 -1872 2234 70 30 30 chr9 99937536 99937835 -42333609 + AluSc SINE Alu 1 299 -10 1129 213 38 42 chr9 99937835 99937870 -42333574 + L1M4 LINE L1 4274 4308 -1838 1112 138 15 15 chr9 99937971 99938166 -42333278 + SVA Other Other 850 1044 -342 318 26 0 0 chr9 99938170 99938209 -42333235 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 306 321 61 0 chr9 99938567 99938698 -42332746 + L2 LINE L2 2237 2375 -939 755 275 9 14 chr9 99938990 99939201 -42332243 - MER63A DNA MER1_type 0 210 1 325 339 18 18 chr9 99940735 99940847 -42330597 + MIR SINE MIR 6 112 -96 313 225 22 0 chr9 99940993 99941082 -42330362 - MER3 DNA MER1_type -84 125 82 766 152 0 41 chr9 99941086 99941231 -42330213 + AluJb SINE Alu 1 139 -173 456 192 0 0 chr9 99941233 99941311 -42330133 - MER3 DNA MER1_type -131 78 1 190 337 31 20 chr9 99941977 99942075 -42329369 - MIR SINE MIR -55 153 55 2351 80 3 0 chr9 99942319 99942605 -42328839 + AluSc SINE Alu 1 287 -22 1940 103 73 0 chr9 99942867 99943161 -42328283 - AluSx SINE Alu 0 317 5 463 331 8 8 chr9 99943165 99943295 -42328149 - MIR SINE MIR -110 152 23 388 331 49 6 chr9 99943329 99943492 -42327952 + L3 LINE CR1 1308 1477 -100 449 274 126 86 chr9 99943678 99943733 -42327711 - L1MC4a LINE L1 -1747 6061 6010 2537 55 0 19 chr9 99943733 99944041 -42327403 + AluY SINE Alu 1 302 -9 449 274 126 86 chr9 99944041 99944184 -42327260 - L1MC4a LINE L1 -1798 6010 5874 1816 147 6 52 chr9 99944184 99944510 -42326934 - AluJo SINE Alu -1 311 1 449 274 126 86 chr9 99944510 99944660 -42326784 - L1MC4a LINE L1 -1934 5874 5698 4194 108 186 93 chr9 99945217 99946637 -42324807 - pTR5 LTR ERV1 0 2438 741 1664 173 187 48 chr9 99946693 99947191 -42324253 + MLT1F1 LTR MaLR 1 567 0 474 283 28 0 chr9 99947574 99947719 -42323725 + MIR3 SINE MIR 38 186 -22 225 301 78 78 chr9 99948520 99948776 -42322668 + L2 LINE L2 2997 3252 -20 751 273 36 14 chr9 99948927 99949147 -42322297 + MIR SINE MIR 25 249 -13 296 260 29 29 chr9 99949234 99949338 -42322106 - MIR SINE MIR -91 171 68 587 322 105 0 chr9 99949750 99949921 -42321523 - MER91A DNA MER1_type 0 196 8 181 357 51 20 chr9 99949920 99950018 -42321426 - L2 LINE L2 -14 3258 3158 * 706 198 53 53 chr9 99950120 99950307 -42321137 + MER63A DNA MER1_type 23 209 -1 450 239 108 24 chr9 99950431 99950598 -42320846 + L1ME3A LINE L1 5990 6170 0 257 279 29 10 chr9 99950581 99950685 -42320759 - L1ME4a LINE L1 -69 6052 5947 * 451 329 65 30 chr9 99950780 99951011 -42320433 + MIR SINE MIR 13 251 -11 553 343 149 12 chr9 99951121 99951538 -42319906 + L3 LINE CR1 1104 1577 0 371 299 66 80 chr9 99952034 99952445 -42318999 + L2 LINE L2 2862 3266 -6 320 371 48 0 chr9 99953719 99953843 -42317601 + L2 LINE L2 3136 3265 -7 2178 120 0 0 chr9 99953961 99954283 -42317161 - AluSx SINE Alu 0 322 1 311 291 73 79 chr9 99954356 99954521 -42316923 + MIR SINE MIR 22 185 -77 251 236 56 124 chr9 99955111 99955272 -42316172 + MIR3 SINE MIR 21 170 -38 202 299 63 63 chr9 99955284 99955458 -42315986 - MER5A DNA MER1_type 0 189 16 326 298 25 55 chr9 99956781 99956962 -42314482 + MIR SINE MIR 18 191 -69 687 278 69 47 chr9 99957074 99957316 -42314128 + L1M4 LINE L1 4755 5011 -1135 1912 157 7 3 chr9 99957316 99957609 -42313835 + AluJb SINE Alu 1 294 -18 687 278 69 47 chr9 99957609 99957772 -42313672 + L1M4 LINE L1 5011 5169 -977 500 285 132 41 chr9 99958547 99958866 -42312578 - L2 LINE L2 0 3272 2925 1002 172 18 0 chr9 99959132 99959301 -42312143 + MER5B DNA MER1_type 7 178 0 553 274 110 27 chr9 99959365 99959584 -42311860 - L2 LINE L2 -495 2819 2583 1151 110 49 0 chr9 99959795 99959959 -42311485 - AluSg1 SINE Alu -19 290 119 184 75 25 25 chr9 99959959 99959999 -42311445 + (TA)n Simple_repeat Simple_repeat 1 40 0 1090 99 7 0 chr9 99960026 99960167 -42311277 - AluSg1 SINE Alu -167 142 1 274 202 211 28 chr9 99960167 99960276 -42311168 + MER53 DNA DNA 61 189 0 210 332 108 63 chr9 99960286 99960509 -42310935 + L2 LINE L2 3004 3236 -36 388 280 42 0 chr9 99960596 99960714 -42310730 + MIR3 SINE MIR 37 159 -49 349 290 28 19 chr9 99960715 99960822 -42310622 + MER5B DNA MER1_type 1 108 -70 273 118 0 0 chr9 99960822 99960873 -42310571 + (TA)n Simple_repeat Simple_repeat 1 51 0 2265 112 3 10 chr9 99960873 99961185 -42310259 - AluSx SINE Alu -2 310 1 238 269 0 0 chr9 99961194 99961246 -42310198 + MER5B DNA MER1_type 125 176 -2 228 208 21 0 chr9 99961248 99961296 -42310148 + MIR3 SINE MIR 153 201 -7 386 261 44 118 chr9 99961705 99961871 -42309573 + MIR3 SINE MIR 31 180 -41 2318 89 0 0 chr9 99961925 99962237 -42309207 + AluSx SINE Alu 1 312 0 209 139 23 0 chr9 99962518 99962561 -42308883 + GA-rich Low_complexity Low_complexity 3 46 0 516 321 12 0 chr9 99964830 99964992 -42306452 + MIR SINE MIR 89 252 -10 262 302 140 34 chr9 99966173 99966501 -42304943 + L2 LINE L2 2221 2583 -731 406 270 37 1 chr9 99967898 99968098 -42303346 + L1MC4a LINE L1 5743 5951 -170 747 256 106 57 chr9 99968098 99968399 -42303045 - L2 LINE L2 -6 3307 2992 3969 217 38 4 chr9 99968399 99969342 -42302102 + L1 LINE L1 4062 5036 -1110 2207 106 3 0 chr9 99969344 99969660 -42301784 + AluSx SINE Alu 1 317 0 2364 77 3 0 chr9 99969922 99970208 -42301236 - AluSc SINE Alu -22 287 1 190 337 31 20 chr9 99970452 99970550 -42300894 + MIR SINE MIR 55 153 -55 456 192 0 0 chr9 99971216 99971294 -42300150 + MER3 DNA MER1_type 1 78 -131 819 131 0 41 chr9 99971296 99971441 -42300003 - AluJb SINE Alu -173 139 1 521 186 18 0 chr9 99971445 99971558 -42299886 + MER3 DNA MER1_type 82 196 -13 1100 155 60 167 chr9 99972115 99972180 -42299264 - L1MD1 LINE L1 -7 6235 6165 2135 136 7 3 chr9 99972180 99972475 -42298969 + AluSx SINE Alu 1 296 -16 1100 155 60 167 chr9 99972475 99972829 -42298615 - L1MD1 LINE L1 -77 6165 5861 19273 27 0 2 chr9 99972850 99975907 -42295537 - L1PA2 LINE L1 0 6155 3103 720 183 126 26 chr9 99976015 99976206 -42295238 + L1MB5 LINE L1 5965 6174 0 536 264 128 29 chr9 99976730 99976972 -42294472 + MLT1J LTR MaLR 238 503 -8 240 35 0 0 chr9 99977286 99977315 -42294129 + (ATG)n Simple_repeat Simple_repeat 3 31 0 226 328 23 69 chr9 99977826 99978000 -42293444 - L2 LINE L2 -20 3293 3128 514 296 8 0 chr9 99978000 99978125 -42293319 - L2 LINE L2 -5 3308 3183 584 271 61 65 chr9 99978162 99978472 -42292972 - L2 LINE L2 0 3313 3005 975 290 19 12 chr9 99978473 99978732 -42292712 - MIR SINE MIR 0 262 2 214 212 174 58 chr9 99978750 99978943 -42292501 - L2 LINE L2 -311 3002 2792 264 265 0 69 chr9 99979098 99979149 -42292295 - MER94 DNA DNA -14 120 78 2163 98 0 0 chr9 99979149 99979424 -42292020 - AluSx SINE Alu -6 306 32 264 265 0 69 chr9 99979424 99979474 -42291970 - MER94 DNA DNA -56 78 26 183 179 51 0 chr9 99979676 99979715 -42291729 + L2 LINE L2 3250 3290 -23 255 61 0 0 chr9 99979943 99979976 -42291468 + (GA)n Simple_repeat Simple_repeat 1 33 0 460 285 26 26 chr9 99980025 99980176 -42291268 - MIR3 SINE MIR -30 178 28 317 248 143 23 chr9 99980765 99980898 -42290546 - MIR3 SINE MIR -8 200 52 2161 90 0 11 chr9 99981074 99981352 -42290092 - AluSx SINE Alu -13 299 25 2316 123 0 0 chr9 99981538 99981846 -42289598 - AluSg SINE Alu -2 308 1 707 275 11 6 chr9 99982495 99982677 -42288767 + MIR SINE MIR 79 261 -1 888 199 28 0 chr9 99983044 99983220 -42288224 - MER20 DNA MER1_type 0 219 39 411 118 0 0 chr9 99983222 99983290 -42288154 - Alu SINE Alu 0 312 245 565 193 7 138 chr9 99983390 99983471 -42287973 + L1MB7 LINE L1 4328 4418 -1728 2234 128 13 0 chr9 99983471 99983777 -42287667 - AluSq SINE Alu -3 310 1 565 193 7 138 chr9 99983777 99984000 -42287444 + L1MB7 LINE L1 4418 4592 -1554 4707 155 45 15 chr9 99984000 99985019 -42286425 + L1MB7 LINE L1 5129 6165 -19 1997 228 70 0 chr9 99985025 99985582 -42285862 + L1MC4 LINE L1 5283 5878 -2164 18628 44 53 5 chr9 99985584 99988037 -42283407 + L1P LINE L1 2 2572 -3574 316 369 125 16 chr9 99988180 99988549 -42282895 - L2 LINE L2 -342 2972 2564 618 286 21 36 chr9 99989057 99989249 -42282195 + MIR SINE MIR 5 193 -69 208 372 0 23 chr9 99989282 99989368 -42282076 + L3 LINE CR1 1384 1467 -110 449 300 54 15 chr9 99989454 99989584 -42281860 - L2 LINE L2 0 3272 3138 235 162 0 162 chr9 99991035 99991109 -42280335 + MER5B DNA MER1_type 5 66 -112 286 305 139 20 chr9 99991578 99991729 -42279715 - MIR3 SINE MIR -20 188 20 848 207 53 0 chr9 99991873 99992042 -42279402 + MIR SINE MIR 63 240 -22 282 278 75 23 chr9 99992086 99992219 -42279225 + MIR3 SINE MIR 16 155 -53 182 301 199 15 chr9 99993436 99993632 -42277812 + L2 LINE L2 3007 3238 -34 348 350 49 12 chr9 99994091 99994254 -42277190 - MIR3 SINE MIR -36 172 4 22 0 0 0 chr9 99994376 99994398 -42277046 + AT_rich Low_complexity Low_complexity 1 22 0 4050 144 16 1 chr9 99994744 99995436 -42276008 + ERVL LTR ERVL 4593 5294 -470 414 217 22 0 chr9 99995539 99995631 -42275813 + MER5B DNA MER1_type 81 174 -4 1607 157 15 0 chr9 99995723 99995990 -42275454 + L1MC1 LINE L1 6055 6325 -8 285 196 0 0 chr9 99995999 99996045 -42275399 + MER5A DNA MER1_type 61 106 -83 483 324 11 5 chr9 99996087 99996272 -42275172 + MER102a DNA MER1_type 118 303 -27 3586 174 32 4 chr9 99996288 99996967 -42274477 - L1MB5 LINE L1 0 6174 5477 4288 141 5 70 chr9 99996992 99997881 -42273563 - LTR46-int LTR ERV1 -5313 1672 842 1005 185 25 6 chr9 99997881 99998181 -42273263 - L1MB5 LINE L1 -712 5454 5152 3662 62 14 0 chr9 99998890 99999394 -42272050 + LTR6B LTR ERV1 48 558 0 560 172 0 0 chr9 100000112 100000199 -42271245 - AluJ SINE Alu -21 291 205 1119 225 0 9 chr9 100000227 100000449 -42270995 - AluJo SINE Alu -92 220 1 293 115 98 0 chr9 100000450 100000511 -42270933 - L1MB5 LINE L1 -982 5164 5098 253 234 125 16 chr9 100001030 100001094 -42270350 - MIR SINE MIR -107 101 31 619 230 160 24 chr9 100001186 100001399 -42270045 - MIR SINE MIR -12 250 9 317 274 142 79 chr9 100001553 100001871 -42269573 - L1M2 LINE L1 -5880 969 632 310 281 85 101 chr9 100001893 100002092 -42269352 + L1M2 LINE L1 905 1100 -5749 549 282 95 79 chr9 100002199 100002504 -42268940 + L3 LINE CR1 1267 1576 -1 924 200 41 8 chr9 100002701 100002952 -42268492 - L1ME LINE L1 -669 5495 5239 430 216 11 0 chr9 100002960 100003048 -42268396 + Tigger7 DNA MER2_type 4 92 -2395 642 258 53 5 chr9 100003091 100003462 -42267982 - L1ME LINE L1 -1538 4608 4077 348 316 0 0 chr9 100003927 100004022 -42267422 + L3 LINE CR1 713 807 -770 216 337 17 111 chr9 100004183 100004355 -42267089 + L3 LINE CR1 900 1055 -522 844 101 25 57 chr9 100004408 100004567 -42266877 - Charlie3 DNA MER1_type -22 2688 2535 2334 90 7 0 chr9 100005009 100005309 -42266135 - AluSp SINE Alu -11 302 1 267 93 0 0 chr9 100005392 100005435 -42266009 + (TA)n Simple_repeat Simple_repeat 2 44 0 1084 136 0 0 chr9 100005437 100005584 -42265860 - AluSc SINE Alu -31 278 132 1988 120 3 39 chr9 100005584 100005893 -42265551 - AluSq SINE Alu -10 303 6 268 260 130 13 chr9 100006013 100006090 -42265354 - L2 LINE L2 -49 3223 3138 1372 258 65 37 chr9 100006298 100006549 -42264895 + MLT1D LTR MaLR 1 244 -261 2082 107 0 18 chr9 100006549 100006664 -42264780 + AluSx SINE Alu 23 139 -173 2274 123 0 0 chr9 100006664 100006972 -42264472 + AluSg SINE Alu 1 308 -2 2082 107 0 18 chr9 100006972 100007136 -42264308 + AluSx SINE Alu 139 297 -15 1372 258 65 37 chr9 100007136 100007463 -42263981 + MLT1D LTR MaLR 244 505 0 215 250 0 0 chr9 100007512 100007564 -42263880 + T-rich Low_complexity Low_complexity 1 52 0 1222 202 18 47 chr9 100008831 100009173 -42262271 + MLT1D LTR MaLR 51 382 -123 843 240 217 28 chr9 100009525 100009921 -42261523 + L2 LINE L2 2507 2977 -337 1795 130 88 14 chr9 100010457 100010742 -42260702 - AluJb SINE Alu -6 306 1 765 233 64 11 chr9 100011282 100011565 -42259879 - HsTC2 DNA Tc2 -4 1894 1597 28 61 0 0 chr9 100012191 100012240 -42259204 + AT_rich Low_complexity Low_complexity 1 49 0 402 250 100 0 chr9 100012882 100012982 -42258462 - MIR SINE MIR -61 147 38 204 67 0 0 chr9 100013118 100013148 -42258296 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 281 105 0 0 chr9 100013150 100013188 -42258256 - L2 LINE L2 -19 3253 3216 25 0 0 0 chr9 100013786 100013811 -42257633 + AT_rich Low_complexity Low_complexity 1 25 0 1818 124 0 0 chr9 100014130 100014388 -42257056 + AluSx SINE Alu 35 292 -20 252 333 127 13 chr9 100018220 100018370 -42253074 + MIR SINE MIR 8 174 -88 2150 223 176 17 chr9 100019550 100019953 -42251491 + L1MC4a LINE L1 6450 6788 -1254 189 0 0 0 chr9 100019953 100019974 -42251470 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 198 0 0 0 chr9 100019973 100019995 -42251449 + (GA)n Simple_repeat Simple_repeat 2 23 0 2150 223 176 17 chr9 100019974 100020615 -42250829 + L1MC4a LINE L1 6788 7326 -716 2263 61 7 0 chr9 100020615 100020926 -42250518 + AluY SINE Alu 1 313 0 2150 223 176 17 chr9 100020926 100021300 -42250144 + L1MC4a LINE L1 7326 8033 -9 1520 126 118 4 chr9 100021311 100021581 -42249863 - AluSx SINE Alu -11 301 1 301 178 133 11 chr9 100022388 100022478 -42248966 - MIR SINE MIR -52 210 110 1060 152 0 24 chr9 100022502 100022667 -42248777 + FRAM SINE Alu 1 161 -15 747 204 0 40 chr9 100023270 100023446 -42247998 + Tigger1 DNA MER2_type 26 194 -2224 * 1661 139 42 19 chr9 100023445 100023755 -42247689 + Tigger1 DNA MER2_type 1761 2077 -341 218 183 14 70 chr9 100023789 100023860 -42247584 + (CATA)n Simple_repeat Simple_repeat 3 69 0 2228 125 0 0 chr9 100024459 100024763 -42246681 + AluSx SINE Alu 1 304 -8 270 103 0 0 chr9 100025178 100025217 -42246227 + tRNA-Lys-AAG tRNA tRNA 1 39 -37 629 201 52 8 chr9 100025248 100025382 -42246062 - FRAM SINE Alu -18 158 19 1751 122 0 0 chr9 100025991 100026228 -42245216 + AluSg SINE Alu 57 293 -17 225 0 0 0 chr9 100026762 100026787 -42244657 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 25 0 0 0 chr9 100027274 100027299 -42244145 + AT_rich Low_complexity Low_complexity 1 25 0 317 212 45 0 chr9 100027784 100027850 -42243594 - L2 LINE L2 -1 3312 3244 874 209 11 6 chr9 100028791 100028968 -42242476 + MER20 DNA MER1_type 1 178 -41 1493 205 51 0 chr9 100029234 100029527 -42241917 + AluJo SINE Alu 1 308 -4 594 236 53 118 chr9 100029538 100029784 -42241660 - MIR SINE MIR -17 245 16 1249 195 51 4 chr9 100030708 100030964 -42240480 + MER58 DNA MER1_type 12 279 -2141 204 301 87 29 chr9 100031268 100031371 -42240073 - L2 LINE L2 -214 3058 2950 266 227 80 23 chr9 100031515 100031603 -42239841 - Charlie7 DNA MER1_type -4 2608 2516 270 206 175 10 chr9 100031613 100031710 -42239734 - Charlie7 DNA MER1_type -2457 155 43 448 360 102 17 chr9 100031744 100032272 -42239172 - L2 LINE L2 -556 2758 2186 34 72 0 0 chr9 100034208 100034277 -42237167 + AT_rich Low_complexity Low_complexity 1 69 0 312 314 93 35 chr9 100034470 100034642 -42236802 + MIR3 SINE MIR 16 197 -11 1001 181 58 5 chr9 100036837 100037042 -42234402 + MER20 DNA MER1_type 1 216 -3 21 82 0 0 chr9 100037702 100037751 -42233693 + AT_rich Low_complexity Low_complexity 1 49 0 1263 279 110 11 chr9 100038587 100039049 -42232395 + L2 LINE L2 2804 3311 -2 348 24 0 0 chr9 100039052 100039093 -42232351 + (TA)n Simple_repeat Simple_repeat 1 41 0 31 68 0 0 chr9 100039125 100039184 -42232260 + AT_rich Low_complexity Low_complexity 1 59 0 256 125 54 18 chr9 100039190 100039302 -42232142 + (TA)n Simple_repeat Simple_repeat 1 116 0 21 36 0 0 chr9 100039447 100039475 -42231969 + AT_rich Low_complexity Low_complexity 1 28 0 2003 112 7 36 chr9 100040008 100040312 -42231132 + AluSx SINE Alu 4 298 -14 586 268 98 6 chr9 100040767 100040950 -42230494 - MIR SINE MIR -59 203 4 464 284 74 6 chr9 100042846 100043008 -42228436 + L2 LINE L2 2379 2551 -763 1475 138 13 49 chr9 100043041 100043345 -42228099 + AluJb SINE Alu 1 293 -19 557 289 108 10 chr9 100043393 100043587 -42227857 + L2 LINE L2 2852 3064 -249 447 202 31 101 chr9 100043597 100043726 -42227718 - L2 LINE L2 -5 3308 3189 300 158 267 0 chr9 100043765 100043866 -42227578 - L2 LINE L2 -445 2869 2742 1559 163 82 0 chr9 100043871 100044141 -42227303 - AluSg SINE Alu -18 292 1 513 253 120 21 chr9 100044399 100044811 -42226633 - MLT1G1 LTR MaLR -43 547 1 31 26 0 0 chr9 100044813 100044851 -42226593 + AT_rich Low_complexity Low_complexity 1 38 0 309 299 133 33 chr9 100044871 100045110 -42226334 - MIR SINE MIR 0 262 2 884 297 81 25 chr9 100045338 100045695 -42225749 + L2 LINE L2 2937 3313 0 525 318 80 29 chr9 100046367 100046820 -42224624 + L1MC/D LINE L1 5293 5768 -2040 335 228 278 6 chr9 100046900 100047080 -42224364 - L1ME4a LINE L1 -124 5997 5769 958 276 99 29 chr9 100047584 100047708 -42223736 - L2 LINE L2 -668 2646 2532 2045 92 3 20 chr9 100047708 100048000 -42223444 + AluSc SINE Alu 1 287 -22 958 276 99 29 chr9 100048000 100048288 -42223156 - L2 LINE L2 -782 2532 2205 517 214 71 14 chr9 100048330 100048470 -42222974 - L1MC5 LINE L1 -51 7910 7763 398 219 268 0 chr9 100048470 100048593 -42222851 - L2 LINE L2 -1098 2216 2061 249 33 0 0 chr9 100048619 100048649 -42222795 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 476 264 8 16 chr9 100048651 100048776 -42222668 + L2 LINE L2 3172 3295 -18 305 289 78 75 chr9 100048808 100049031 -42222413 - L2 LINE L2 -250 3022 2799 332 148 0 0 chr9 100049310 100049364 -42222080 + L2 LINE L2 3256 3309 -4 1476 154 4 19 chr9 100050321 100050588 -42220856 + ERVL-B1 LTR ERVL 5494 5756 -8 1479 214 69 75 chr9 100050588 100051072 -42220372 + MLT2B1 LTR ERVL 1 483 -37 339 25 0 0 chr9 100051072 100051112 -42220332 + (CA)n Simple_repeat Simple_repeat 2 41 0 1479 214 69 75 chr9 100051112 100051150 -42220294 + MLT2B1 LTR ERVL 483 520 0 632 271 155 0 chr9 100051963 100052180 -42219264 - MIR SINE MIR -3 259 7 1632 185 0 3 chr9 100052747 100053045 -42218399 + AluJo SINE Alu 1 297 -15 2073 127 82 86 chr9 100053062 100053502 -42217942 + MLT1C LTR MaLR 27 464 -3 300 296 30 23 chr9 100054260 100054392 -42217052 + MER103 DNA DNA 32 164 -2 238 337 0 20 chr9 100055294 100055395 -42216049 + MIR SINE MIR 18 116 -92 242 342 120 0 chr9 100055904 100056021 -42215423 + MIR3 SINE MIR 30 160 -48 310 93 0 0 chr9 100056189 100056232 -42215212 - Charlie5 DNA MER1_type -195 2417 2375 1067 194 281 8 chr9 100057118 100057485 -42213959 - MLT1C LTR MaLR 0 467 1 1553 169 0 11 chr9 100058396 100058662 -42212782 - AluJo SINE Alu -49 263 1 1653 159 10 3 chr9 100058711 100059006 -42212438 - L1MB3 LINE L1 -1 6182 5886 294 246 90 30 chr9 100059083 100059217 -42212227 + L2 LINE L2 2616 2757 -557 827 154 16 96 chr9 100060047 100060147 -42211297 - MER45 DNA AcHobo 0 1581 1501 1891 163 0 0 chr9 100060147 100060447 -42210997 + AluJb SINE Alu 1 300 -12 827 154 16 96 chr9 100060447 100060534 -42210910 - MER45 DNA AcHobo -80 1501 1409 837 161 0 0 chr9 100060543 100060667 -42210777 - FLAM_C SINE Alu -17 126 3 873 305 84 56 chr9 100060736 100061306 -42210138 - MER45C DNA AcHobo -267 686 101 1009 105 0 0 chr9 100061306 100061439 -42210005 + AluSx SINE Alu 1 133 -180 198 103 0 0 chr9 100061439 100061468 -42209976 + (A)n Simple_repeat Simple_repeat 1 29 0 1145 138 0 0 chr9 100061483 100061657 -42209787 + AluSx SINE Alu 120 293 -17 416 234 0 0 chr9 100061657 100061734 -42209710 - MER45C DNA AcHobo -852 101 25 408 330 0 17 chr9 100061899 100062017 -42209427 + MIR SINE MIR 17 132 -76 252 348 80 36 chr9 100062022 100062160 -42209284 - L2 LINE L2 -4 3268 3125 246 327 18 26 chr9 100062265 100062378 -42209066 + MIR3 SINE MIR 5 116 -92 497 340 54 10 chr9 100062682 100062885 -42208559 + L3 LINE CR1 857 1068 -509 2832 224 53 65 chr9 100062921 100063747 -42207697 - L1ME3 LINE L1 0 6162 5347 479 254 141 77 chr9 100063796 100063997 -42207447 + L3 LINE CR1 1171 1358 -219 1684 164 0 0 chr9 100063997 100064271 -42207173 + AluJb SINE Alu 1 274 -38 263 28 28 0 chr9 100064271 100064307 -42207137 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 479 254 141 77 chr9 100064307 100064431 -42207013 + L3 LINE CR1 1357 1518 -59 345 24 0 0 chr9 100064769 100064811 -42206633 + (TG)n Simple_repeat Simple_repeat 1 42 0 213 39 0 0 chr9 100065258 100065284 -42206160 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2093 109 3 0 chr9 100065351 100065644 -42205800 + AluSq SINE Alu 1 294 -19 561 292 86 12 chr9 100065814 100066161 -42205283 + L1MC/D LINE L1 5197 5566 -759 1055 144 82 5 chr9 100066162 100066357 -42205087 + AluJb SINE Alu 76 285 -27 495 246 54 0 chr9 100066525 100066655 -42204789 - MIR SINE MIR -1 261 125 1327 219 18 11 chr9 100066663 100066941 -42204503 - MLT1C LTR MaLR 0 467 188 663 193 102 40 chr9 100066979 100067155 -42204289 - MLT1C LTR MaLR -275 192 6 386 229 94 0 chr9 100067156 100067252 -42204192 - MIR SINE MIR -156 106 2 597 195 149 67 chr9 100067278 100067393 -42204051 - MIR SINE MIR -23 239 135 2210 105 0 3 chr9 100067393 100067697 -42203747 + AluSx SINE Alu 1 303 -9 597 195 149 67 chr9 100067697 100067776 -42203668 - MIR SINE MIR -127 135 29 329 0 0 24 chr9 100067776 100067818 -42203626 + (TG)n Simple_repeat Simple_repeat 2 42 0 2575 190 120 14 chr9 100068250 100068902 -42202542 + L1ME2 LINE L1 5430 6150 -14 1315 241 113 34 chr9 100069386 100069793 -42201651 - MLT1F LTR MaLR -103 439 1 2153 111 10 0 chr9 100070006 100070303 -42201141 - AluSx SINE Alu -12 300 1 2380 115 25 27 chr9 100070455 100070820 -42200624 - THE1B LTR MaLR 0 364 1 11804 89 22 6 chr9 100070820 100071755 -42199689 - THE1B-int LTR MaLR 0 1580 607 5289 163 31 36 chr9 100071755 100072832 -42198612 - MER11C LTR ERVK 0 1071 1 11804 89 22 6 chr9 100072832 100073449 -42197995 - THE1B-int LTR MaLR -973 607 2 2377 126 5 27 chr9 100073450 100073822 -42197622 - THE1B LTR MaLR 0 364 1 1102 185 53 0 chr9 100074011 100074238 -42197206 - Tigger2a DNA MER2_type 0 444 206 765 200 7 0 chr9 100074240 100074380 -42197064 + FLAM_C SINE Alu 2 142 -1 961 228 5 5 chr9 100074384 100074573 -42196871 - Tigger2a DNA MER2_type -245 189 1 310 236 42 0 chr9 100074672 100074744 -42196700 + MIR SINE MIR 90 164 -98 336 242 159 0 chr9 100075212 100075344 -42196100 + MER103 DNA DNA 13 165 -1 335 232 111 40 chr9 100075357 100075455 -42195989 - MIR3 SINE MIR -36 172 68 410 250 128 23 chr9 100075455 100075627 -42195817 + MIR SINE MIR 1 190 -72 242 200 18 0 chr9 100076259 100076314 -42195130 + L1ME4a LINE L1 5793 5848 -273 547 208 138 13 chr9 100076318 100076477 -42194967 - MER58A DNA MER1_type 0 224 46 769 261 219 28 chr9 100076567 100076924 -42194520 + L2 LINE L2 2888 3312 -1 254 238 16 0 chr9 100076983 100077046 -42194398 + L1ME4a LINE L1 5985 6048 -73 808 341 50 29 chr9 100077266 100078002 -42193442 + L2 LINE L2 2489 3230 -42 24 0 0 0 chr9 100078004 100078028 -42193416 + AT_rich Low_complexity Low_complexity 1 24 0 558 243 212 5 chr9 100078441 100078630 -42192814 + MIR SINE MIR 35 262 0 268 303 45 0 chr9 100078991 100079080 -42192364 - MER117 DNA MER1_type -31 166 74 757 276 207 17 chr9 100079132 100079490 -42191954 + L2 LINE L2 2888 3313 0 238 254 16 0 chr9 100079536 100079599 -42191845 + L1ME4a LINE L1 5985 6048 -73 2162 103 3 0 chr9 100079752 100080054 -42191390 + AluY SINE Alu 1 303 -8 552 190 103 9 chr9 100080460 100080576 -42190868 - L2 LINE L2 0 3313 3187 377 330 51 0 chr9 100080712 100080830 -42190614 - MIR3 SINE MIR -49 159 36 5067 92 38 6 chr9 100081004 100081024 -42190420 + L1PA13 LINE L1 5411 5429 -734 2123 113 0 0 chr9 100081024 100081316 -42190128 + AluSx SINE Alu 1 292 -20 5067 92 38 6 chr9 100081316 100082024 -42189420 + L1PA13 LINE L1 5429 6163 0 1511 147 82 4 chr9 100082446 100082725 -42188719 - AluJo SINE Alu -11 301 1 248 374 55 0 chr9 100082787 100082878 -42188566 + MIR SINE MIR 56 151 -57 230 272 62 0 chr9 100083305 100083386 -42188058 - L2 LINE L2 -5 3308 3223 399 242 211 10 chr9 100084392 100084521 -42186923 + MER5A DNA MER1_type 22 187 -2 244 277 89 54 chr9 100084587 100084699 -42186745 + MIR SINE MIR 79 194 -68 225 348 0 33 chr9 100084734 100084826 -42186618 - L2 LINE L2 -52 3220 3132 221 56 0 28 chr9 100084874 100084910 -42186534 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 234 287 88 66 chr9 100084915 100085051 -42186393 - L2 LINE L2 -2 3270 3132 246 333 187 13 chr9 100085138 100085625 -42185819 - L2 LINE L2 -251 3021 2456 455 256 23 15 chr9 100087078 100087211 -42184233 - MIR SINE MIR -34 228 95 266 227 45 57 chr9 100087493 100087581 -42183863 - MIR3 SINE MIR -109 99 13 196 307 149 9 chr9 100088811 100088925 -42182519 - MIR3 SINE MIR -70 138 9 207 0 0 0 chr9 100090632 100090655 -42180789 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 1743 233 123 13 chr9 100091873 100092546 -42178898 - L1MC4 LINE L1 -363 7679 6933 1653 229 190 69 chr9 100092550 100093533 -42177911 - L1MC4 LINE L1 -1 8041 6926 2113 130 0 0 chr9 100093533 100093840 -42177604 - AluSx SINE Alu -5 307 1 1653 229 190 69 chr9 100093840 100093887 -42177557 - L1MC4 LINE L1 -1116 6926 6886 467 226 161 18 chr9 100093884 100094052 -42177392 - L1MC4 LINE L1 -1379 6663 6472 * 1457 151 47 72 chr9 100094237 100094555 -42176889 - AluJo SINE Alu -2 310 1 637 197 113 0 chr9 100095202 100095344 -42176100 + MIR SINE MIR 76 233 -29 299 216 80 45 chr9 100095713 100095801 -42175643 + MIR3 SINE MIR 111 201 -7 1158 217 62 43 chr9 100097084 100097439 -42174005 + L1ME2 LINE L1 5799 6155 -9 295 223 53 58 chr9 100097480 100097553 -42173891 - L1ME4a LINE L1 -4 6117 6045 1657 177 3 22 chr9 100097553 100097869 -42173575 + AluJo SINE Alu 1 310 -2 295 223 53 58 chr9 100097869 100097983 -42173461 - L1ME4a LINE L1 -76 6045 5931 437 336 60 39 chr9 100098000 100098050 -42173394 - L1ME4a LINE L1 -20 6101 6054 1538 113 41 0 chr9 100098050 100098271 -42173173 - MER30 DNA MER1_type 0 230 1 437 336 60 39 chr9 100098271 100098503 -42172941 - L1ME4a LINE L1 -67 6054 5813 1851 227 87 54 chr9 100098507 100099150 -42172294 - L1ME3A LINE L1 -6 6164 5501 242 284 0 0 chr9 100099151 100099225 -42172219 - L1ME4a LINE L1 -293 5828 5755 274 194 210 0 chr9 100099229 100099291 -42172153 - Charlie4a DNA MER1_type 0 508 434 273 269 19 29 chr9 100099290 100099394 -42172050 - Charlie4a DNA MER1_type -168 340 238 * 354 259 101 70 chr9 100099703 100099861 -42171583 - MIR SINE MIR -71 191 29 1936 115 41 7 chr9 100100278 100100573 -42170871 - AluSq SINE Alu -7 306 2 219 69 0 0 chr9 100100714 100100743 -42170701 + (CATTT)n Simple_repeat Simple_repeat 2 30 0 1567 148 21 21 chr9 100100743 100101027 -42170417 - AluJo SINE Alu -28 284 1 295 206 22 65 chr9 100101069 100101161 -42170283 - MER103 DNA DNA -33 133 46 221 200 22 0 chr9 100101542 100101587 -42169857 - MIR3 SINE MIR -46 162 117 2788 218 50 43 chr9 100101921 100102714 -42168730 - MER63C DNA MER1_type -132 928 206 2293 73 0 10 chr9 100102714 100103017 -42168427 - AluY SINE Alu -11 300 1 2788 218 50 43 chr9 100103017 100103175 -42168269 - MER63C DNA MER1_type -854 206 51 346 230 55 90 chr9 100103960 100104303 -42167141 - L1M4 LINE L1 -2847 3299 2969 1636 150 52 98 chr9 100104331 100104702 -42166742 - L1MA9 LINE L1 0 6312 5962 1759 162 3 7 chr9 100104702 100104999 -42166445 - AluJb SINE Alu -11 301 6 1636 150 52 98 chr9 100104999 100105054 -42166390 - L1MA9 LINE L1 -350 5962 5906 290 122 0 0 chr9 100105054 100105095 -42166349 - L2 LINE L2 -10 3303 3263 380 263 38 34 chr9 100105103 100105312 -42166132 - L1M4 LINE L1 -3192 2954 2745 1426 261 69 26 chr9 100105340 100105779 -42165665 - L1ME3 LINE L1 -1 6161 5694 2119 81 32 0 chr9 100105779 100106064 -42165380 - AluSp SINE Alu -19 294 1 1426 261 69 26 chr9 100106064 100106171 -42165273 - L1ME3 LINE L1 -468 5694 5593 457 330 23 17 chr9 100106340 100106516 -42164928 + MER5A DNA MER1_type 8 184 -5 344 286 266 5 chr9 100106966 100107158 -42164286 + MIR SINE MIR 21 262 0 476 285 32 13 chr9 100108032 100108190 -42163254 + MIR3 SINE MIR 24 184 -24 198 312 86 2 chr9 100108225 100108369 -42163075 - MIR SINE MIR -56 152 32 279 189 19 0 chr9 100108825 100108878 -42162566 + MIR SINE MIR 94 147 -61 630 269 16 28 chr9 100109230 100109412 -42162032 + MIR SINE MIR 1 180 -82 183 80 0 0 chr9 100109479 100109504 -42161940 + (ATGGTG)n Simple_repeat Simple_repeat 4 28 0 348 250 0 0 chr9 100109871 100109943 -42161501 + MIR SINE MIR 50 121 -87 618 239 117 52 chr9 100110282 100110512 -42160932 + MIR SINE MIR 6 250 -12 941 279 89 33 chr9 100110529 100110955 -42160489 - MLT1K LTR MaLR -8 580 131 277 270 90 40 chr9 100111415 100111515 -42159929 - MIR3 SINE MIR -23 185 81 546 115 0 0 chr9 100111548 100111635 -42159809 + L1PA13 LINE L1 6062 6148 -15 1540 185 0 30 chr9 100111698 100112000 -42159444 + AluJo SINE Alu 1 293 -19 1295 205 67 31 chr9 100112572 100112899 -42158545 + LTR16C LTR ERVL 152 490 -1 249 333 49 71 chr9 100113370 100113553 -42157891 - MIR3 SINE MIR 0 208 30 536 298 116 5 chr9 100113600 100113815 -42157629 + MIR SINE MIR 9 247 -15 228 291 175 0 chr9 100114222 100114325 -42157119 + MIR3 SINE MIR 67 187 -21 534 133 0 12 chr9 100115204 100115287 -42156157 + AluJb SINE Alu 44 125 -187 1139 101 10 16 chr9 100115288 100115603 -42155841 + (GAA)n Simple_repeat Simple_repeat 1 313 0 804 145 0 16 chr9 100115629 100115753 -42155691 + FRAM SINE Alu 22 143 -33 198 0 0 0 chr9 100115753 100115775 -42155669 + (CA)n Simple_repeat Simple_repeat 1 22 0 230 213 12 75 chr9 100115889 100115914 -42155530 + MER113 DNA MER1_type? 45 70 -451 2659 172 17 2 chr9 100115914 100116379 -42155065 + MER70A LTR ERVL 1 472 0 230 213 12 75 chr9 100116379 100116433 -42155011 + MER113 DNA MER1_type? 70 119 -402 567 259 65 60 chr9 100116637 100116838 -42154606 - MIR SINE MIR -56 206 5 1473 205 152 37 chr9 100116919 100117348 -42154096 + MLT1D LTR MaLR 27 504 -1 1969 148 40 35 chr9 100117422 100117795 -42153649 + THE1C LTR MaLR 1 375 0 401 273 60 13 chr9 100118314 100118464 -42152980 - MIR SINE MIR -50 212 56 181 140 60 40 chr9 100119198 100119248 -42152196 + MIR SINE MIR 65 115 -147 500 285 127 54 chr9 100119574 100119795 -42151649 - MIR SINE MIR -6 256 20 1924 119 32 0 chr9 100119804 100120089 -42151355 - AluSx SINE Alu -18 294 1 968 233 37 43 chr9 100120097 100120419 -42151025 - L1MC5 LINE L1 -36 7925 7606 407 259 74 45 chr9 100120473 100120680 -42150764 - MIR3 SINE MIR -41 221 14 519 304 57 66 chr9 100121496 100121845 -42149599 + L2 LINE L2 2918 3263 -9 275 284 9 78 chr9 100121850 100121966 -42149478 - MIR SINE MIR -66 196 89 456 313 25 6 chr9 100122530 100122690 -42148754 - MIR SINE MIR -51 211 49 261 256 112 32 chr9 100122725 100122815 -42148629 - MER103 DNA DNA -30 136 32 1973 131 7 0 chr9 100122815 100123106 -42148338 + AluSg SINE Alu 1 293 -17 261 256 112 32 chr9 100123106 100123140 -42148304 - MER103 DNA DNA -134 32 2 206 299 73 29 chr9 100123289 100123426 -42148018 - MIR3 SINE MIR -30 178 36 400 248 13 0 chr9 100123615 100123712 -42147732 - MIR SINE MIR -87 121 22 1228 208 60 3 chr9 100123857 100123975 -42147469 + AluJo SINE Alu 1 111 -201 216 0 0 0 chr9 100123975 100123999 -42147445 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1228 208 60 3 chr9 100123999 100124164 -42147280 + AluJo SINE Alu 111 300 -12 354 202 147 0 chr9 100124199 100124308 -42147136 + MARNA DNA Mariner 243 367 -219 289 260 19 117 chr9 100124379 100124533 -42146911 - L2 LINE L2 -62 3251 3113 294 263 82 43 chr9 100125189 100125316 -42146128 - MIR SINE MIR -68 140 14 207 100 0 0 chr9 100125965 100125995 -42145449 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1709 139 0 0 chr9 100125995 100126253 -42145191 - AluSx SINE Alu -17 295 38 330 245 66 28 chr9 100126401 100126507 -42144937 + MIR3 SINE MIR 95 204 -4 811 173 0 0 chr9 100126533 100126697 -42144747 + FLAM_C SINE Alu 1 164 0 340 248 32 45 chr9 100126891 100127048 -42144396 - L2 LINE L2 -204 3068 2914 181 295 0 16 chr9 100127269 100127330 -42144114 - MIR SINE MIR -115 93 34 2068 134 0 6 chr9 100127365 100127679 -42143765 + AluSx SINE Alu 1 312 0 1327 223 140 37 chr9 100127828 100128286 -42143158 + MLT1D LTR MaLR 1 505 0 1088 164 63 5 chr9 100128317 100128524 -42142920 + AluJb SINE Alu 85 303 -9 408 292 43 37 chr9 100128784 100128945 -42142499 + MIR SINE MIR 31 192 -70 294 260 20 30 chr9 100129430 100129530 -42141914 + MIR SINE MIR 88 186 -76 636 202 16 23 chr9 100129543 100129672 -42141772 - MIR3 SINE MIR -32 176 49 1459 161 31 82 chr9 100130685 100130722 -42140722 + AluJo SINE Alu 1 38 -264 2121 114 0 0 chr9 100130722 100131019 -42140425 - AluSx SINE Alu -15 297 1 1459 161 31 82 chr9 100131019 100131298 -42140146 + AluJo SINE Alu 38 301 -1 1809 154 3 3 chr9 100131740 100132039 -42139405 + AluJo SINE Alu 1 299 -13 334 228 13 0 chr9 100132042 100132121 -42139323 + L1MD3 LINE L1 7887 7966 -29 1346 211 28 36 chr9 100132138 100132502 -42138942 - L1MC4 LINE L1 -819 7223 6863 240 213 43 0 chr9 100132676 100132770 -42138674 + L1ME4a LINE L1 6021 6118 -3 239 326 38 27 chr9 100132929 100133117 -42138327 + MIR SINE MIR 30 216 -46 612 288 167 14 chr9 100133315 100133669 -42137775 - LTR16C LTR ERVL -2 489 82 357 231 120 26 chr9 100133809 100133926 -42137518 - MIR SINE MIR -134 128 1 426 290 65 6 chr9 100134391 100134564 -42136880 + MIR SINE MIR 35 212 -50 2298 74 3 0 chr9 100134581 100134877 -42136567 + AluSp SINE Alu 1 297 -16 1172 224 88 24 chr9 100135119 100135449 -42135995 - Charlie1 DNA MER1_type -2410 351 1 305 306 25 6 chr9 100135513 100135673 -42135771 + L1M4 LINE L1 37 199 -6343 1048 269 45 16 chr9 100136019 100136395 -42135049 + L1M4 LINE L1 3986 4372 -2272 302 271 0 0 chr9 100136752 100136822 -42134622 + MLT1K LTR MaLR 519 588 0 2336 96 0 0 chr9 100136858 100137170 -42134274 + AluSq SINE Alu 1 312 -1 587 259 150 104 chr9 100137183 100137704 -42133740 - MLT1L LTR MaLR -62 553 9 310 250 170 80 chr9 100138327 100138651 -42132793 + L2 LINE L2 2871 3223 -49 1115 140 25 35 chr9 100138729 100138789 -42132655 - MER3 DNA MER1_type 0 209 150 2278 107 0 0 chr9 100138789 100139097 -42132347 + AluSx SINE Alu 1 308 -4 1115 140 25 35 chr9 100139097 100139236 -42132208 - MER3 DNA MER1_type -59 150 12 8452 148 18 9 chr9 100139399 100140806 -42130638 - Ricksha DNA DNA -7 3239 1821 850 198 6 6 chr9 100140804 100140961 -42130483 - Ricksha DNA DNA -2957 289 133 * 469 263 28 60 chr9 100141078 100141248 -42130196 - MIR SINE MIR -64 144 19 628 305 20 15 chr9 100141250 100141453 -42129991 - L3 LINE CR1 -34 1543 1340 363 269 227 21 chr9 100141463 100141745 -42129699 - L3 LINE CR1 -29 1548 1209 222 267 209 29 chr9 100141866 100141971 -42129473 - MIR SINE MIR 0 262 139 502 324 37 0 chr9 100142130 100142266 -42129178 + MIR SINE MIR 15 155 -107 192 226 24 95 chr9 100142673 100142757 -42128687 + MIR SINE MIR 67 145 -63 384 235 102 36 chr9 100142990 100143148 -42128296 - MIR SINE MIR -62 146 22 313 296 74 45 chr9 100143261 100143418 -42128026 + MIR3 SINE MIR 20 180 -54 183 312 117 45 chr9 100143490 100143644 -42127800 - MIR SINE MIR -40 222 58 265 261 25 0 chr9 100143761 100143874 -42127570 - MIR3 SINE MIR -25 183 66 388 202 61 40 chr9 100144313 100144412 -42127032 - MIR SINE MIR -73 135 35 253 317 12 12 chr9 100144550 100144632 -42126812 + MIR SINE MIR 23 104 -158 255 283 0 0 chr9 100145860 100145920 -42125524 + MIR SINE MIR 78 137 -71 1007 264 87 4 chr9 100146519 100146761 -42124683 + MIR SINE MIR 1 262 0 1146 232 89 48 chr9 100146993 100147497 -42123947 + HAL1 LINE L1 1128 1652 -855 1126 218 16 4 chr9 100147497 100147754 -42123690 - MER96B DNA MER1_type? -156 261 2 678 256 51 14 chr9 100147757 100147972 -42123472 + HAL1 LINE L1 1670 1892 -615 877 198 138 19 chr9 100148044 100148107 -42123337 + HAL1 LINE L1 2016 2070 -437 333 0 0 0 chr9 100148107 100148144 -42123300 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 877 198 138 19 chr9 100148144 100148348 -42123096 + HAL1 LINE L1 2070 2315 -192 5699 145 39 20 chr9 100148348 100148651 -42122793 + L1MA9 LINE L1 5099 5395 -917 2123 103 3 16 chr9 100148651 100148963 -42122481 + AluSx SINE Alu 3 310 -2 5699 145 39 20 chr9 100148963 100149353 -42122091 + L1MA9 LINE L1 5395 5776 -536 351 0 0 0 chr9 100149353 100149392 -42122052 + (CA)n Simple_repeat Simple_repeat 2 40 0 5699 145 39 20 chr9 100149392 100149743 -42121701 + L1MA9 LINE L1 5776 6168 -144 447 19 0 0 chr9 100149743 100149795 -42121649 + (CA)n Simple_repeat Simple_repeat 1 52 0 5699 145 39 20 chr9 100149795 100149930 -42121514 + L1MA9 LINE L1 6168 6299 -13 509 246 47 33 chr9 100149927 100150138 -42121306 + HAL1 LINE L1 2294 2507 0 * 260 222 121 0 chr9 100150187 100150286 -42121158 + HAL1 LINE L1 1984 2094 -413 387 267 62 41 chr9 100150512 100150658 -42120786 + MIR3 SINE MIR 30 178 -30 5106 168 116 107 chr9 100150876 100151441 -42120003 - L1MD3 LINE L1 -13 7982 7423 537 209 36 72 chr9 100151441 100151580 -42119864 - MLT1F1 LTR MaLR -433 134 1 2855 128 12 44 chr9 100151582 100152084 -42119360 - MER66B LTR ERV1 0 486 1 5106 168 116 107 chr9 100152084 100152869 -42118575 - L1MD3 LINE L1 -572 7423 6478 186 43 0 0 chr9 100152872 100152895 -42118549 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 980 251 75 8 chr9 100152900 100153167 -42118277 - L1MC4a LINE L1 -1201 6607 6323 545 278 19 71 chr9 100153188 100153400 -42118044 + MIR SINE MIR 46 246 -16 377 208 47 22 chr9 100153745 100153855 -42117589 + MIR3 SINE MIR 47 163 -45 3230 162 7 15 chr9 100153925 100154517 -42116927 - L1MC2 LINE L1 0 6344 5758 696 292 47 21 chr9 100154553 100154786 -42116658 + MER102b DNA MER1_type 87 325 -16 747 276 80 22 chr9 100154876 100155296 -42116148 + LTR33 LTR ERVL 39 507 -14 606 291 18 0 chr9 100155304 100155469 -42115975 + MIR SINE MIR 95 262 0 482 294 93 2 chr9 100155746 100155961 -42115483 - MIR SINE MIR -1 261 11 309 279 131 8 chr9 100156470 100156592 -42114852 + MIR SINE MIR 107 243 -19 322 200 55 83 chr9 100156915 100157060 -42114384 - MIR SINE MIR -38 224 84 187 375 33 17 chr9 100157176 100157296 -42114148 - MIR3 SINE MIR -84 124 3 263 345 121 9 chr9 100157912 100158028 -42113416 - L2 LINE L2 0 3272 3144 295 311 39 0 chr9 100158075 100158178 -42113266 + MIR SINE MIR 22 128 -134 813 235 95 14 chr9 100158304 100158525 -42112919 - MIR SINE MIR -4 258 20 614 143 8 0 chr9 100158554 100158673 -42112771 + CT-rich Low_complexity Low_complexity 2 121 0 674 276 115 71 chr9 100158707 100159116 -42112328 - L2 LINE L2 0 3272 2846 200 35 35 0 chr9 100159441 100159470 -42111974 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 882 255 91 40 chr9 100159471 100160131 -42111313 - L2 LINE L2 -13 3300 2601 250 319 70 28 chr9 100160397 100160678 -42110766 + L2 LINE L2 2632 2930 -342 910 124 8 0 chr9 100162357 100162486 -42108958 + THE1C LTR MaLR 246 375 0 6336 128 67 6 chr9 100162486 100162864 -42108580 + THE1C-int LTR MaLR 1 354 -1226 2106 122 0 3 chr9 100162864 100163168 -42108276 + AluSx SINE Alu 1 303 -9 6336 128 67 6 chr9 100163168 100163801 -42107643 + THE1C-int LTR MaLR 354 1074 -506 625 184 79 129 chr9 100163800 100163916 -42107528 + HAL1 LINE L1 2244 2364 -143 * 1647 108 35 62 chr9 100163916 100164230 -42107214 + AluSg SINE Alu 1 306 0 625 184 79 129 chr9 100164230 100164390 -42107054 + HAL1 LINE L1 2364 2507 0 658 299 51 51 chr9 100164392 100164666 -42106778 + L3 LINE CR1 1303 1576 -1 184 393 0 56 chr9 100164715 100164822 -42106622 - L2 LINE L2 0 3272 3172 566 305 32 5 chr9 100164827 100165017 -42106427 - MIR3 SINE MIR -7 201 7 180 0 0 0 chr9 100165449 100165469 -42105975 + (T)n Simple_repeat Simple_repeat 1 20 0 1053 172 28 28 chr9 100165595 100165810 -42105634 + MER20 DNA MER1_type 1 215 -4 243 237 17 0 chr9 100165819 100165878 -42105566 - MLT1K LTR MaLR -12 576 517 1981 127 3 7 chr9 100165935 100166234 -42105210 + AluJo SINE Alu 1 298 -14 310 236 113 87 chr9 100166328 100166523 -42104921 - MLT1K LTR MaLR -180 408 209 389 300 131 35 chr9 100166827 100167200 -42104244 + L1ME LINE L1 5410 5818 -303 2286 237 54 16 chr9 100167645 100168178 -42103266 + MLT1H1 LTR MaLR 6 551 -4 1765 174 102 152 chr9 100168182 100168810 -42102634 + L1MC5 LINE L1 6976 7634 -327 2096 109 6 16 chr9 100168810 100169123 -42102321 + AluSx SINE Alu 1 310 -2 1966 126 3 28 chr9 100169125 100169442 -42102002 + AluSx SINE Alu 2 310 -2 1765 174 102 152 chr9 100169442 100169515 -42101929 + L1MC5 LINE L1 7635 7710 -251 234 0 0 0 chr9 100169515 100169541 -42101903 + (TG)n Simple_repeat Simple_repeat 2 27 0 1765 174 102 152 chr9 100169541 100169847 -42101597 + L1MC5 LINE L1 7710 7936 -25 635 261 139 13 chr9 100170450 100170680 -42100764 + MIR SINE MIR 2 260 -2 213 306 65 75 chr9 100171427 100171613 -42099831 - L2 LINE L2 -173 3099 2916 381 229 48 19 chr9 100172072 100172177 -42099267 + L1MEd LINE L1 27 134 -5985 899 167 71 0 chr9 100172201 100172369 -42099075 - L1PB4 LINE L1 -13 6143 5964 464 284 125 59 chr9 100172774 100173165 -42098279 - L2 LINE L2 -1 3271 2855 2478 137 0 0 chr9 100173392 100173757 -42097687 + MER47A DNA MER2_type 2 366 0 579 194 9 19 chr9 100173913 100174021 -42097423 + MER81 DNA DNA 1 107 -7 307 303 181 16 chr9 100174421 100174609 -42096835 + L2 LINE L2 2168 2386 -928 588 363 24 4 chr9 100174768 100175016 -42096428 - L2 LINE L2 -337 2977 2725 1893 173 74 5 chr9 100175020 100175466 -42095978 - MLT2B1 LTR ERVL 0 520 1 4473 289 93 72 chr9 100175471 100177437 -42094007 - L2 LINE L2 -593 2721 688 2878 82 0 5 chr9 100177437 100177814 -42093630 - THE1C LTR MaLR 0 375 1 4473 289 93 72 chr9 100177814 100178429 -42093015 - L2 LINE L2 -2626 688 87 564 188 8 0 chr9 100178882 100178999 -42092445 + MER53 DNA DNA 14 131 -58 1291 226 157 26 chr9 100179060 100179475 -42091969 - MLT2B1 LTR ERVL -51 469 1 7889 23 0 268 chr9 100179534 100181244 -42090200 + SVA Other Other 128 1378 -8 439 327 13 7 chr9 100181247 100181400 -42090044 + L1M4 LINE L1 3221 3374 -2772 2058 118 0 0 chr9 100181458 100181746 -42089698 + AluSx SINE Alu 1 288 -24 330 289 114 30 chr9 100181841 100182007 -42089437 - MIR SINE MIR -78 184 5 26 64 0 0 chr9 100182405 100182452 -42088992 + AT_rich Low_complexity Low_complexity 1 47 0 414 0 0 0 chr9 100182687 100182733 -42088711 + (A)n Simple_repeat Simple_repeat 1 46 0 318 143 0 0 chr9 100183043 100183085 -42088359 + (A)n Simple_repeat Simple_repeat 1 42 0 745 136 45 19 chr9 100183735 100183889 -42087555 - Charlie4 DNA MER1_type -9 1952 1795 342 150 17 17 chr9 100183889 100183949 -42087495 + L1MCa LINE L1 1257 1316 -5110 2273 102 0 0 chr9 100183952 100184265 -42087179 + AluSq SINE Alu 1 313 0 423 98 0 0 chr9 100184268 100184329 -42087115 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 1117 215 16 48 chr9 100184331 100184642 -42086802 + L1MB8 LINE L1 5878 6178 0 556 262 133 13 chr9 100184637 100184954 -42086490 + L1MCa LINE L1 1508 1862 -4745 * 1862 167 3 10 chr9 100184943 100185255 -42086189 + L1M4 LINE L1 5433 5742 -432 329 276 44 24 chr9 100185255 100185389 -42086055 - MLT1I LTR MaLR -270 139 2 692 70 0 0 chr9 100185630 100185716 -42085728 + AluSp/q SINE Alu 212 297 -16 604 233 7 60 chr9 100185958 100186132 -42085312 + MIR SINE MIR 45 210 -52 222 264 19 0 chr9 100186498 100186551 -42084893 + GA-rich Low_complexity Low_complexity 2 55 0 1097 139 74 0 chr9 100186583 100186785 -42084659 + L1MB2 LINE L1 5953 6169 -2 2375 65 0 7 chr9 100186813 100187123 -42084321 + AluSg SINE Alu 1 308 -2 311 259 12 36 chr9 100187133 100187384 -42084060 + GA-rich Low_complexity Low_complexity 1 244 0 24 53 0 0 chr9 100187490 100187528 -42083916 + GC_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr9 100187685 100187715 -42083729 + GC_rich Low_complexity Low_complexity 1 30 0 273 358 32 11 chr9 100187855 100188045 -42083399 + MIR SINE MIR 47 240 -22 362 252 76 0 chr9 100188067 100188186 -42083258 + MIR3 SINE MIR 27 154 -54 238 176 0 29 chr9 100188399 100188467 -42082977 + (CA)n Simple_repeat Simple_repeat 1 66 0 22 0 0 0 chr9 100188837 100188859 -42082585 + AT_rich Low_complexity Low_complexity 1 22 0 2383 74 0 7 chr9 100188903 100189213 -42082231 + AluSg SINE Alu 1 308 -2 348 283 52 23 chr9 100189330 100189503 -42081941 + L2 LINE L2 2004 2181 -1133 24 32 0 0 chr9 100189646 100189677 -42081767 + AT_rich Low_complexity Low_complexity 1 31 0 443 238 43 67 chr9 100189917 100190081 -42081363 - MIR3 SINE MIR -31 177 18 213 39 0 0 chr9 100190125 100190151 -42081293 + (CA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr9 100190386 100190409 -42081035 + AT_rich Low_complexity Low_complexity 1 23 0 496 254 56 47 chr9 100190416 100190609 -42080835 - MIR SINE MIR -66 196 1 1271 211 16 0 chr9 100190730 100190976 -42080468 + MIR SINE MIR 1 250 -12 211 246 200 0 chr9 100191202 100191267 -42080177 - MIR SINE MIR -91 117 40 226 245 212 46 chr9 100191721 100191872 -42079572 - L2 LINE L2 -1 3271 3096 624 219 38 25 chr9 100191965 100192125 -42079319 + MLT1D LTR MaLR 5 166 -339 617 245 31 31 chr9 100192201 100192360 -42079084 + MIR SINE MIR 25 183 -79 289 303 61 15 chr9 100192366 100192498 -42078946 + MLT1J2 LTR MaLR 1 138 -312 23 0 0 0 chr9 100192800 100192823 -42078621 + AT_rich Low_complexity Low_complexity 1 23 0 499 212 123 18 chr9 100192823 100192993 -42078451 - MER113 DNA MER1_type? -329 192 5 407 200 140 40 chr9 100193010 100193160 -42078284 + MIR SINE MIR 20 184 -78 401 286 37 25 chr9 100193596 100193757 -42077687 + MIR SINE MIR 100 262 0 2418 99 3 0 chr9 100194927 100195239 -42076205 - AluSq SINE Alu 0 313 1 1573 182 35 11 chr9 100195258 100195605 -42075839 - L1MB7 LINE L1 -13 6171 5817 255 228 35 0 chr9 100195611 100195668 -42075776 + L2 LINE L2 3234 3292 -21 2107 168 18 13 chr9 100196368 100196766 -42074678 - L1MB4 LINE L1 -1 6179 5780 279 201 29 29 chr9 100196813 100196918 -42074526 - L1MCa LINE L1 -1333 6989 1996 189 0 0 0 chr9 100196921 100196942 -42074502 + (TA)n Simple_repeat Simple_repeat 1 21 0 5793 171 18 34 chr9 100196951 100197662 -42073782 - L1MB4 LINE L1 -388 5786 5065 1895 152 3 3 chr9 100197662 100197970 -42073474 + AluJb SINE Alu 1 308 0 5793 171 18 34 chr9 100197970 100198977 -42072467 - L1MB4 LINE L1 -1109 5065 4094 3641 217 20 45 chr9 100198973 100199283 -42072161 - L1MB4 LINE L1 -2603 3543 3227 * 430 91 0 0 chr9 100199283 100199349 -42072095 - Alu SINE Alu 0 318 253 3641 217 20 45 chr9 100199349 100199378 -42072066 - L1MB4 LINE L1 -2919 3227 3199 2229 132 0 0 chr9 100199378 100199689 -42071755 - AluY SINE Alu 0 311 1 3641 217 20 45 chr9 100199689 100200656 -42070788 - L1MB4 LINE L1 -2947 3199 2291 532 239 13 45 chr9 100201010 100201165 -42070279 + MIR SINE MIR 113 262 0 21 57 0 0 chr9 100201260 100201295 -42070149 + AT_rich Low_complexity Low_complexity 1 35 0 247 259 35 86 chr9 100201395 100201511 -42069933 - MER91C DNA MER1_type 0 140 31 573 297 120 29 chr9 100201586 100202001 -42069443 - L2 LINE L2 -261 3052 2610 1675 154 3 0 chr9 100202417 100202703 -42068741 + L1 LINE L1 4125 4411 -1735 1430 133 4 0 chr9 100202702 100202936 -42068508 - L1 LINE L1 -1489 4657 4423 * 30 69 0 0 chr9 100203134 100203192 -42068252 + AT_rich Low_complexity Low_complexity 1 58 0 2459 88 7 0 chr9 100203250 100203556 -42067888 + AluSc SINE Alu 1 308 -1 219 139 0 0 chr9 100203720 100203756 -42067688 + (TGAG)n Simple_repeat Simple_repeat 4 39 0 249 83 0 0 chr9 100203846 100203882 -42067562 + (TG)n Simple_repeat Simple_repeat 2 37 0 456 298 24 6 chr9 100204233 100204401 -42067043 - MIR SINE MIR -37 225 55 373 296 138 5 chr9 100204580 100204769 -42066675 + MIR SINE MIR 47 260 -2 392 289 132 0 chr9 100205113 100205234 -42066210 - L2 LINE L2 0 3272 3136 241 326 11 0 chr9 100205581 100205670 -42065774 + MIR SINE MIR 49 138 -70 1486 167 93 48 chr9 100206063 100206361 -42065083 - MSTD LTR MaLR -2 394 73 2222 99 3 0 chr9 100206361 100206671 -42064773 + AluSx SINE Alu 1 311 0 1486 167 93 48 chr9 100206671 100206748 -42064696 - MSTD LTR MaLR -323 73 1 587 208 83 0 chr9 100206966 100207134 -42064310 + L1ME LINE L1 5558 5739 -382 1665 281 21 7 chr9 100207139 100207563 -42063881 - LTR16C LTR ERVL 0 491 62 236 313 69 47 chr9 100207628 100208075 -42063369 + HAL1b LINE L1 98 554 -794 777 215 5 46 chr9 100208335 100208530 -42062914 + L1MC2 LINE L1 2646 2832 -3314 * 5747 171 55 47 chr9 100208522 100209105 -42062339 + L1MC2 LINE L1 4122 4699 -1645 672 152 64 16 chr9 100209105 100209230 -42062214 + FLAM_C SINE Alu 1 131 -2 5747 171 55 47 chr9 100209230 100210259 -42061185 + L1MC2 LINE L1 4699 5751 -593 1165 173 72 129 chr9 100210259 100210646 -42060798 + MLT1A1 LTR MaLR 1 365 0 5747 171 55 47 chr9 100210646 100211245 -42060199 + L1MC2 LINE L1 5751 6344 0 1534 270 81 42 chr9 100211241 100211398 -42060046 + L1M4 LINE L1 3426 3575 -2571 * 2099 131 0 10 chr9 100211398 100211711 -42059733 + AluSx SINE Alu 1 310 -2 1534 270 81 42 chr9 100211711 100211727 -42059717 + L1M4 LINE L1 3575 3589 -2557 1705 201 52 9 chr9 100211727 100212075 -42059369 + MLT1A1 LTR MaLR 3 365 0 1534 270 81 42 chr9 100212075 100212977 -42058467 + L1M4 LINE L1 3589 4544 -1602 1110 227 112 72 chr9 100212996 100213569 -42057875 + L1MC5 LINE L1 7340 7935 -26 472 221 25 91 chr9 100213864 100213909 -42057535 - MER5B DNA MER1_type -1 177 131 2143 100 23 20 chr9 100213909 100214210 -42057234 - AluSc SINE Alu -7 302 1 472 221 25 91 chr9 100214210 100214373 -42057071 - MER5B DNA MER1_type -47 131 4 180 181 26 60 chr9 100214476 100214592 -42056852 + (TAGA)n Simple_repeat Simple_repeat 4 115 0 212 264 38 0 chr9 100214608 100214661 -42056783 + GA-rich Low_complexity Low_complexity 5 59 0 641 142 97 102 chr9 100214874 100215050 -42056394 + L1MB5 LINE L1 6000 6174 0 225 221 31 16 chr9 100215822 100215949 -42055495 + GA-rich Low_complexity Low_complexity 5 133 0 466 185 82 41 chr9 100216232 100216378 -42055066 - MIR SINE MIR -91 171 20 241 297 0 0 chr9 100216455 100216519 -42054925 + MIR SINE MIR 85 148 -60 1393 187 34 8 chr9 100216607 100216874 -42054570 - AluJo SINE Alu -16 296 23 192 309 15 0 chr9 100217036 100217104 -42054340 + L2 LINE L2 3203 3271 -1 301 307 107 13 chr9 100217164 100217314 -42054130 + MIR3 SINE MIR 34 197 -11 404 270 36 66 chr9 100217554 100217765 -42053679 - MIR3 SINE MIR -50 212 15 273 196 0 0 chr9 100219048 100219104 -42052340 + (CATA)n Simple_repeat Simple_repeat 1 56 0 3950 117 31 10 chr9 100219109 100219683 -42051761 - Tigger4(Zombi) DNA MER2_type 0 2731 2142 1825 153 0 53 chr9 100219683 100220003 -42051441 + AluJo SINE Alu 1 303 -9 3950 117 31 10 chr9 100220003 100220036 -42051408 - Tigger4(Zombi) DNA MER2_type -589 2142 2111 2459 207 25 33 chr9 100220042 100220642 -42050802 + L1ME1 LINE L1 3522 4116 -2030 * 6230 150 19 19 chr9 100220629 100222472 -42048972 - L1PA16 LINE L1 -3 6163 4327 803 169 0 0 chr9 100222472 100222596 -42048848 - FLAM_C SINE Alu -9 124 1 6230 150 19 19 chr9 100222596 100222825 -42048619 - L1PA16 LINE L1 -1839 4327 4099 3047 181 22 40 chr9 100222824 100223444 -42048000 + L1ME1 LINE L1 4095 4702 -1444 * 2391 86 10 0 chr9 100223444 100223748 -42047696 + AluSp SINE Alu 1 307 -6 3047 181 22 40 chr9 100223748 100223847 -42047597 + L1ME1 LINE L1 4702 4801 -1345 288 106 0 0 chr9 100223847 100223894 -42047550 + L1MB7 LINE L1 2994 3040 -3106 934 114 13 7 chr9 100223894 100224043 -42047401 + L1MC2 LINE L1 6075 6224 -120 630 180 8 8 chr9 100224043 100224165 -42047279 + L1MB7 LINE L1 3736 3857 -2289 * 4674 162 50 17 chr9 100224154 100225497 -42045947 + L1MB7 LINE L1 4799 6183 -1 270 358 40 13 chr9 100225497 100225648 -42045796 - L2 LINE L2 -689 2625 2471 2089 146 0 0 chr9 100225868 100226169 -42045275 + AluSx SINE Alu 1 301 -11 2106 181 70 89 chr9 100226455 100226978 -42044466 + L1ME1 LINE L1 4855 5387 -779 1554 228 124 40 chr9 100226978 100227478 -42043966 + MLT1F LTR MaLR 1 542 0 2106 181 70 89 chr9 100227478 100227688 -42043756 + L1ME1 LINE L1 5387 5600 -566 2315 105 17 30 chr9 100227688 100227713 -42043731 + L1PA14 LINE L1 5805 5829 -332 2378 88 7 3 chr9 100227713 100228019 -42043425 + AluSc SINE Alu 1 307 -2 2315 105 17 30 chr9 100228019 100228387 -42043057 + L1PA14 LINE L1 5829 6161 0 2106 181 70 89 chr9 100228387 100228903 -42042541 + L1ME1 LINE L1 5600 6080 -86 242 332 75 15 chr9 100228907 100229106 -42042338 + L1ME LINE L1 5565 5775 -346 348 217 69 86 chr9 100229389 100229533 -42041911 - L3 LINE CR1 -771 806 664 1545 143 0 0 chr9 100229533 100229763 -42041681 + MER30 DNA MER1_type 1 230 0 348 217 69 86 chr9 100229763 100229793 -42041651 - L3 LINE CR1 -913 664 635 181 225 0 0 chr9 100231141 100231181 -42040263 - MIR SINE MIR -129 79 40 359 268 57 0 chr9 100231272 100231395 -42040049 - MIR SINE MIR -87 175 46 198 298 18 0 chr9 100233477 100233534 -42037910 - MIR SINE MIR -65 143 86 1028 146 12 0 chr9 100235145 100235316 -42036128 - FAM SINE Alu -1 174 2 23 0 0 0 chr9 100235997 100236020 -42035424 + GC_rich Low_complexity Low_complexity 1 23 0 180 333 18 0 chr9 100236704 100236815 -42034629 + MIR3 SINE MIR 42 154 -54 25 51 0 0 chr9 100237193 100237232 -42034212 + GC_rich Low_complexity Low_complexity 1 39 0 29 0 0 0 chr9 100238089 100238118 -42033326 + GC_rich Low_complexity Low_complexity 1 29 0 324 48 0 0 chr9 100238478 100238520 -42032924 + (CCG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr9 100240609 100240630 -42030814 + AT_rich Low_complexity Low_complexity 1 21 0 1371 174 53 4 chr9 100240698 100240979 -42030465 - MER33 DNA MER1_type 0 324 30 186 330 104 0 chr9 100241395 100241510 -42029934 + MIR SINE MIR 86 212 -50 227 288 0 0 chr9 100242716 100242782 -42028662 + A-rich Low_complexity Low_complexity 1 66 0 270 260 83 31 chr9 100242885 100242981 -42028463 + MIR SINE MIR 41 141 -67 317 235 0 0 chr9 100243146 100243214 -42028230 + MER5A DNA MER1_type 42 109 -80 198 255 42 0 chr9 100244151 100244229 -42027215 - MIR SINE MIR -95 113 43 288 255 56 19 chr9 100245307 100245468 -42025976 + L2 LINE L2 2561 2727 -587 2329 86 14 0 chr9 100245618 100245909 -42025535 - AluSp SINE Alu -18 295 1 686 265 112 30 chr9 100246160 100246428 -42025016 + MLT1L LTR MaLR 1 290 -325 1080 113 0 0 chr9 100246435 100246613 -42024831 + AluSg/x SINE Alu 138 315 0 216 213 213 0 chr9 100246729 100246804 -42024640 - MIR3 SINE MIR -43 165 75 232 324 41 24 chr9 100246865 100247035 -42024409 - MIR SINE MIR 0 262 90 2103 116 0 0 chr9 100247970 100248268 -42023176 - AluSx SINE Alu 0 306 9 9070 204 50 50 chr9 100248513 100249345 -42022099 - L1M3 LINE L1 -571 5609 4779 1677 170 0 61 chr9 100249345 100249675 -42021769 - AluJo SINE Alu 0 312 3 9070 204 50 50 chr9 100249675 100251338 -42020106 - L1M3 LINE L1 -1401 4779 3119 2388 102 3 3 chr9 100251338 100251651 -42019793 + AluSq SINE Alu 1 313 0 9070 204 50 50 chr9 100251651 100251929 -42019515 - L1M3 LINE L1 -3061 3119 2832 1958 156 0 0 chr9 100251929 100252234 -42019210 - AluSx SINE Alu 0 305 1 9070 204 50 50 chr9 100252234 100252437 -42019007 - L1M3 LINE L1 -3348 2832 2631 1279 177 14 0 chr9 100252436 100252656 -42018788 - L1M4 LINE L1 -1154 4992 4770 * 885 350 87 5 chr9 100253103 100253668 -42017776 + L3 LINE CR1 930 1540 -37 234 0 0 0 chr9 100253668 100253694 -42017750 + (T)n Simple_repeat Simple_repeat 1 26 0 1523 132 5 9 chr9 100253706 100253925 -42017519 - AluSx SINE Alu -94 218 1 348 229 15 76 chr9 100254087 100254218 -42017226 - LTR67 LTR ERVL -2 555 433 225 263 125 83 chr9 100254780 100255020 -42016424 + L1MEd LINE L1 59 308 -5811 1139 147 82 17 chr9 100255099 100255330 -42016114 + L1MDa LINE L1 202 447 -6093 2274 144 25 9 chr9 100255389 100255966 -42015478 + L1P5 LINE L1 5021 5605 -546 811 197 51 34 chr9 100255972 100256150 -42015294 - AluJo SINE Alu -40 272 92 580 166 0 115 chr9 100256153 100256292 -42015152 - FLAM_A SINE Alu -8 134 12 2970 150 62 39 chr9 100256303 100256916 -42014528 + L1MD1 LINE L1 5581 6207 -35 413 169 0 14 chr9 100257054 100257125 -42014319 + HUERS-P3 LTR ERV1 8849 8918 -1 2613 184 40 43 chr9 100257131 100257153 -42014291 + LTR9B LTR ERV1 7 28 -616 2735 26 3 0 chr9 100257153 100257457 -42013987 + AluY SINE Alu 1 305 -6 2613 184 40 43 chr9 100257457 100257990 -42013454 + LTR9B LTR ERV1 28 560 -84 241 261 45 45 chr9 100259084 100259195 -42012249 - L2 LINE L2 0 3272 3162 181 261 68 23 chr9 100259510 100259598 -42011846 - L2 LINE L2 -208 3064 2973 1301 263 129 7 chr9 100259798 100260378 -42011066 - L1ME3A LINE L1 -5 6165 5476 340 322 66 16 chr9 100260626 100260868 -42010576 - L2 LINE L2 -932 2382 2129 245 227 171 0 chr9 100261149 100261237 -42010207 - L3 LINE CR1 -78 1499 1397 939 129 0 0 chr9 100261771 100261903 -42009541 + AluSq/x SINE Alu 1 132 -180 2159 121 10 3 chr9 100261907 100262246 -42009198 + AluSg SINE Alu 1 341 0 2333 101 0 3 chr9 100262316 100262614 -42008830 - AluSx SINE Alu -15 297 1 2229 138 0 0 chr9 100262703 100263015 -42008429 + AluSx SINE Alu 1 312 0 294 293 0 60 chr9 100263017 100263167 -42008277 - HAL1 LINE L1 -44 2463 2323 506 213 43 171 chr9 100263167 100263402 -42008042 + MLT1J1 LTR MaLR 1 184 -262 2193 123 10 3 chr9 100263402 100263710 -42007734 - AluSx SINE Alu -2 310 1 506 213 43 171 chr9 100263710 100263802 -42007642 + MLT1J1 LTR MaLR 184 286 -160 1608 130 157 0 chr9 100263802 100264063 -42007381 + AluSx SINE Alu 1 302 0 227 234 16 16 chr9 100264159 100264223 -42007221 + MLT1J1 LTR MaLR 364 427 -19 251 265 96 74 chr9 100264272 100264502 -42006942 - MLT1J LTR MaLR -46 465 231 1062 208 21 30 chr9 100264553 100264789 -42006655 - AluJo SINE Alu -76 236 3 237 248 27 16 chr9 100264831 100264927 -42006517 - MLT1J1 LTR MaLR -305 141 50 2358 82 3 7 chr9 100265072 100265364 -42006080 - AluSq SINE Alu -21 292 2 1475 251 96 2 chr9 100265623 100266101 -42005343 - HAL1 LINE L1 -853 1654 1132 240 244 47 0 chr9 100266301 100266387 -42005057 - L1MEd LINE L1 -5986 133 44 479 70 0 28 chr9 100266562 100266633 -42004811 + MER41A LTR ERV1 399 467 -87 1706 185 6 13 chr9 100266675 100266989 -42004455 + AluJb SINE Alu 1 312 0 3656 166 35 36 chr9 100267103 100268290 -42003154 + L1MB7 LINE L1 4844 6105 -69 1719 181 10 7 chr9 100268290 100268578 -42002866 + AluJo SINE Alu 1 289 -23 3656 166 35 36 chr9 100268578 100268639 -42002805 + L1MB7 LINE L1 6105 6165 -9 1708 82 0 0 chr9 100268639 100268845 -42002599 - AluSg/x SINE Alu -10 302 97 2930 141 35 14 chr9 100268845 100269076 -42002368 - Tigger3b DNA MER2_type -2536 492 267 1675 164 29 35 chr9 100269076 100269387 -42002057 - AluJb SINE Alu -3 309 1 2930 141 35 14 chr9 100269387 100269637 -42001807 - Tigger3b DNA MER2_type -2761 267 1 1508 154 4 40 chr9 100270099 100270352 -42001092 + AluJo SINE Alu 54 297 -15 864 160 0 71 chr9 100270416 100270470 -42000974 + Tigger1 DNA MER2_type 1 57 -2361 2877 13 0 0 chr9 100270470 100270776 -42000668 - AluYb8 SINE Alu -12 306 1 864 160 0 71 chr9 100270776 100270890 -42000554 + Tigger1 DNA MER2_type 57 157 -2261 819 138 148 71 chr9 100270882 100270905 -42000539 + Tigger1 DNA MER2_type 2205 2225 -193 * 1573 100 33 8 chr9 100270905 100271145 -42000299 - L1MA1 LINE L1 0 6302 6057 819 138 148 71 chr9 100271145 100271317 -42000127 + Tigger1 DNA MER2_type 2225 2415 -3 215 200 0 0 chr9 100271339 100271374 -42000070 + (CA)n Simple_repeat Simple_repeat 2 36 0 1827 142 7 7 chr9 100271382 100271664 -41999780 - AluSx SINE Alu -30 282 1 2159 131 0 0 chr9 100272256 100272547 -41998897 - AluSx SINE Alu -21 291 1 1447 193 130 27 chr9 100273631 100273962 -41997482 - MLT1A1 LTR MaLR 0 365 1 1862 161 23 3 chr9 100274853 100275152 -41996292 - AluSx SINE Alu -7 305 1 203 316 25 0 chr9 100275859 100275938 -41995506 + (CCCCAG)n Simple_repeat Simple_repeat 4 84 0 1184 225 16 10 chr9 100277744 100278051 -41993393 - L1MDb LINE L1 -2697 3709 3401 1649 233 71 62 chr9 100278076 100278195 -41993249 - L1MDb LINE L1 -4780 1626 1510 1530 168 35 18 chr9 100278195 100278481 -41992963 - AluJb SINE Alu -8 304 14 1649 233 71 62 chr9 100278481 100279067 -41992377 - L1MDb LINE L1 -4896 1510 949 2005 182 15 0 chr9 100279067 100279407 -41992037 - MER7A DNA MER2_type -3 343 1 1649 233 71 62 chr9 100279407 100279562 -41991882 - L1MDb LINE L1 -5457 949 797 2162 110 4 0 chr9 100280572 100280882 -41990562 - AluSx SINE Alu 0 311 1 737 203 124 0 chr9 100281412 100281488 -41989956 - MER58C DNA MER1_type -2220 200 135 207 0 0 0 chr9 100281488 100281511 -41989933 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 737 203 124 0 chr9 100281511 100281611 -41989833 - MER58C DNA MER1_type -2285 135 2 974 155 0 58 chr9 100281926 100282100 -41989344 - AluJ SINE Alu -13 299 136 879 160 44 44 chr9 100282409 100282590 -41988854 - AluJ SINE Alu -14 298 118 599 217 17 0 chr9 100282635 100282755 -41988689 - AluJ SINE Alu -176 126 5 2530 57 3 0 chr9 100282910 100283209 -41988235 - AluY SINE Alu -11 300 1 723 171 0 0 chr9 100283492 100283638 -41987806 - AluSg/x SINE Alu 0 318 173 1876 150 6 29 chr9 100283675 100283988 -41987456 + AluJb SINE Alu 1 306 -6 1018 139 81 0 chr9 100283988 100284151 -41987293 + AluJb SINE Alu 128 307 -5 189 306 47 12 chr9 100284372 100284457 -41986987 - MIR SINE MIR -98 110 23 213 181 167 0 chr9 100284670 100284742 -41986702 + MIR SINE MIR 28 111 -151 186 167 0 0 chr9 100285614 100285650 -41985794 + (TG)n Simple_repeat Simple_repeat 2 37 0 318 290 216 47 chr9 100286038 100286362 -41985082 + L3 LINE CR1 1154 1547 -30 2316 100 0 13 chr9 100286362 100286672 -41984772 - AluSx SINE Alu -6 306 1 318 290 216 47 chr9 100286672 100286709 -41984735 + L3 LINE CR1 1547 1576 -1 564 211 63 84 chr9 100286857 100287047 -41984397 + L1MD2 LINE L1 6173 6358 -1 1714 171 7 7 chr9 100287057 100287362 -41984082 + AluJo SINE Alu 3 307 -5 2302 85 34 0 chr9 100287882 100288176 -41983268 + AluSg SINE Alu 1 304 -6 620 258 4 61 chr9 100289793 100289944 -41981500 - MARNA DNA Mariner -208 378 243 2045 110 23 33 chr9 100289944 100290244 -41981200 + AluSg SINE Alu 1 297 -13 620 258 4 61 chr9 100290244 100290321 -41981123 - MARNA DNA Mariner -343 243 163 1356 97 5 20 chr9 100290745 100290941 -41980503 + AluSg/x SINE Alu 120 312 0 384 249 144 12 chr9 100291234 100291407 -41980037 + MER91A DNA MER1_type 1 196 0 963 240 79 88 chr9 100291746 100292067 -41979377 + L2 LINE L2 2734 3045 -268 1754 157 3 33 chr9 100292067 100292200 -41979244 + AluJb SINE Alu 1 136 -176 2471 73 0 0 chr9 100292200 100292501 -41978943 + AluY SINE Alu 1 301 -10 1754 157 3 33 chr9 100292501 100292673 -41978771 + AluJb SINE Alu 136 297 -15 963 240 79 88 chr9 100292673 100292940 -41978504 + L2 LINE L2 3045 3313 0 2036 132 17 0 chr9 100293033 100293321 -41978123 - AluSx SINE Alu -19 293 1 186 301 68 0 chr9 100295083 100295156 -41976288 + L2 LINE L2 3194 3271 -1 2316 224 58 38 chr9 100295165 100295746 -41975698 + MLT1E LTR MaLR 1 593 0 248 333 40 0 chr9 100296120 100296195 -41975249 + MIR SINE MIR 70 147 -115 357 273 15 68 chr9 100296350 100296482 -41974962 + L2 LINE L2 3183 3307 -6 213 358 95 11 chr9 100297796 100297891 -41973553 + L2 LINE L2 3163 3265 -7 371 265 68 31 chr9 100297894 100298056 -41973388 - MIR SINE MIR -3 259 92 787 299 102 39 chr9 100298281 100298820 -41972624 + L1MC4a LINE L1 5313 5885 -1923 912 196 139 0 chr9 100299370 100299564 -41971880 - MER58A DNA MER1_type -3 221 1 212 346 53 30 chr9 100299565 100299698 -41971746 + L3 LINE CR1 1307 1442 -135 799 77 10 0 chr9 100299759 100299863 -41971581 + HY1 scRNA scRNA 1 105 -7 24 0 0 0 chr9 100299863 100299887 -41971557 + AT_rich Low_complexity Low_complexity 1 24 0 1258 157 18 18 chr9 100299908 100300125 -41971319 + AluJb SINE Alu 85 301 -11 205 184 0 0 chr9 100300576 100300614 -41970830 + (CATA)n Simple_repeat Simple_repeat 3 40 0 1917 96 29 29 chr9 100300767 100301047 -41970397 - AluSg SINE Alu -4 306 27 805 124 71 0 chr9 100301047 100301160 -41970284 - AluSg SINE Alu -189 121 1 508 262 32 0 chr9 100301448 100301574 -41969870 + L2 LINE L2 3183 3312 -1 352 245 54 138 chr9 100301594 100301737 -41969707 + L1ME4a LINE L1 5862 5975 -146 2038 150 0 10 chr9 100301737 100302051 -41969393 - AluSx SINE Alu -1 311 1 352 245 54 138 chr9 100302051 100302168 -41969276 + L1ME4a LINE L1 5975 6100 -21 2146 99 13 33 chr9 100302168 100302471 -41968973 + AluSx SINE Alu 1 297 -15 213 283 111 10 chr9 100303166 100303265 -41968179 - MIR SINE MIR -37 225 117 314 193 18 0 chr9 100303375 100303432 -41968012 + MER66B LTR ERV1 287 344 -142 458 136 48 0 chr9 100303432 100303535 -41967909 + A-rich Low_complexity Low_complexity 2 109 0 183 327 144 10 chr9 100303546 100303650 -41967794 - L2 LINE L2 -18 3295 3178 299 358 89 8 chr9 100304207 100304330 -41967114 - L2 LINE L2 -25 3247 3115 343 226 78 29 chr9 100304482 100304584 -41966860 + MIR SINE MIR 69 175 -87 227 261 0 0 chr9 100305269 100305315 -41966129 + L1ME LINE L1 5727 5772 -349 809 169 0 0 chr9 100305343 100305467 -41965977 + FLAM_C SINE Alu 1 124 -19 2546 33 3 7 chr9 100305493 100305793 -41965651 - AluY SINE Alu -12 299 1 22 0 0 0 chr9 100305829 100305851 -41965593 + AT_rich Low_complexity Low_complexity 1 22 0 1268 82 0 0 chr9 100307006 100307165 -41964279 + FRAM SINE Alu 1 40 0 236 314 66 50 chr9 100308951 100309072 -41962372 + MIR SINE MIR 84 206 -56 2373 43 20 30 chr9 100309123 100309427 -41962017 + AluY SINE Alu 1 301 -10 259 220 0 0 chr9 100309604 100309654 -41961790 + MER5B DNA MER1_type 4 53 -125 1266 171 39 12 chr9 100309664 100309921 -41961523 + L1MD3 LINE L1 7730 7993 -2 370 232 0 42 chr9 100309977 100310072 -41961372 + MER5B DNA MER1_type 88 178 0 259 234 64 64 chr9 100310104 100310198 -41961246 + L2 LINE L2 3174 3267 -5 21 0 0 0 chr9 100310903 100310924 -41960520 + AT_rich Low_complexity Low_complexity 1 21 0 309 51 0 0 chr9 100311230 100311269 -41960175 + (CA)n Simple_repeat Simple_repeat 2 40 0 452 303 179 16 chr9 100311567 100312009 -41959435 + L1MC4a LINE L1 4890 5403 -743 300 57 0 0 chr9 100312060 100312095 -41959349 + U2 snRNA snRNA 1 35 -153 2639 30 0 0 chr9 100312095 100312395 -41959049 - AluY SINE Alu -11 300 1 500 255 95 35 chr9 100312415 100312615 -41958829 + L1MC4a LINE L1 5456 5667 -454 348 318 68 14 chr9 100312618 100312766 -41958678 + MIR SINE MIR 102 257 -5 401 200 211 38 chr9 100312775 100312960 -41958484 + L1MC4a LINE L1 5682 5898 -1910 261 237 97 11 chr9 100313021 100313114 -41958330 + L1ME4a LINE L1 6019 6119 -2 413 286 0 27 chr9 100315357 100315469 -41955975 + MIR3 SINE MIR 58 166 -42 24 32 0 0 chr9 100316553 100316584 -41954860 + AT_rich Low_complexity Low_complexity 1 31 0 2480 86 0 0 chr9 100316593 100316895 -41954549 + AluSg SINE Alu 1 302 -8 387 261 0 35 chr9 100317192 100317307 -41954137 + MIR SINE MIR 92 202 -60 645 203 44 19 chr9 100317351 100317509 -41953935 - MIR SINE MIR -10 252 91 246 330 22 0 chr9 100317724 100317815 -41953629 - MIR SINE MIR -168 94 2 2170 108 3 10 chr9 100318134 100318418 -41953026 + AluSx SINE Alu 1 284 -28 183 80 0 0 chr9 100318418 100318443 -41953001 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2170 108 3 10 chr9 100318443 100318463 -41952981 + AluSx SINE Alu 284 303 -9 402 75 38 38 chr9 100318463 100318543 -41952901 + (GGGGA)n Simple_repeat Simple_repeat 1 80 0 967 167 48 92 chr9 100319377 100319605 -41951839 + MER20 DNA MER1_type 2 219 0 402 280 43 65 chr9 100320001 100320207 -41951237 + MIR SINE MIR 42 251 -11 320 253 187 0 chr9 100320436 100320527 -41950917 + L2 LINE L2 3160 3267 -5 271 292 84 47 chr9 100320696 100320970 -41950474 - L1ME4a LINE L1 -189 5932 5649 1671 194 56 30 chr9 100321180 100321281 -41950163 + Charlie4a DNA MER1_type 64 161 -1800 1406 55 0 0 chr9 100321281 100321446 -41949998 - L1PA11 LINE L1 -4 6170 6006 1671 194 56 30 chr9 100321446 100321773 -41949671 + Charlie4a DNA MER1_type 161 503 -5 379 316 32 7 chr9 100321824 100321979 -41949465 - L1ME4a LINE L1 -460 5661 5503 380 244 77 45 chr9 100322610 100322766 -41948678 + MIR SINE MIR 76 236 -26 596 326 25 25 chr9 100323174 100323416 -41948028 + MIR SINE MIR 16 257 -5 305 301 65 0 chr9 100323542 100323635 -41947809 - MIR3 SINE MIR -4 204 106 1273 236 152 16 chr9 100325029 100325802 -41945642 - L2 LINE L2 -34 3279 2338 603 255 54 0 chr9 100325812 100325961 -41945483 - L2 LINE L2 -1232 2082 1926 539 211 0 18 chr9 100326049 100326158 -41945286 - MER45A DNA AcHobo -4 174 68 385 300 61 0 chr9 100326158 100326331 -41945113 - MIR SINE MIR -50 212 30 2044 146 0 13 chr9 100326341 100326656 -41944788 - AluJb SINE Alu -1 311 1 372 220 73 9 chr9 100326930 100327039 -41944405 + MIR SINE MIR 77 192 -70 698 344 90 42 chr9 100327561 100328619 -41942825 + L2 LINE L2 1728 2835 -479 224 122 24 0 chr9 100328779 100328820 -41942624 + (ATG)n Simple_repeat Simple_repeat 3 44 0 436 326 136 11 chr9 100328858 100329042 -41942402 - MIR SINE MIR -53 209 3 324 219 0 62 chr9 100329150 100329246 -41942198 - L1MC4 LINE L1 -1339 6703 6614 39885 77 6 10 chr9 100329250 100335399 -41936045 - L1PA6 LINE L1 -16 6138 11 366 387 28 7 chr9 100335456 100335598 -41935846 - L2 LINE L2 -4 3268 3124 1887 168 0 19 chr9 100335630 100335940 -41935504 - AluJo SINE Alu -8 304 1 788 266 82 13 chr9 100336178 100336411 -41935033 - MIR SINE MIR 0 262 14 306 296 14 0 chr9 100336678 100336749 -41934695 - L2 LINE L2 -214 3058 2987 448 254 91 102 chr9 100336756 100336906 -41934538 + MIR SINE MIR 1 148 -114 2157 126 0 0 chr9 100336906 100337192 -41934252 + AluSx SINE Alu 1 286 -26 448 254 91 102 chr9 100337192 100337305 -41934139 + MIR SINE MIR 148 261 -1 385 225 200 8 chr9 100337381 100337501 -41933943 - MIR3 SINE MIR -64 144 2 232 224 14 98 chr9 100337558 100337701 -41933743 + MER113 DNA MER1_type? 7 137 -384 1046 182 25 49 chr9 100337705 100337937 -41933507 + AluJo SINE Alu 87 313 0 238 167 0 62 chr9 100337941 100337989 -41933455 + MER113 DNA MER1_type? 139 183 -338 867 259 12 32 chr9 100339394 100339669 -41931775 - AluSg SINE Alu 0 310 51 210 400 0 0 chr9 100340216 100340336 -41931108 + G-rich Low_complexity Low_complexity 1 120 0 1259 106 0 11 chr9 100340441 100340620 -41930824 + AluSg/x SINE Alu 125 301 -9 180 321 0 0 chr9 100341471 100341524 -41929920 - MIR3 SINE MIR -11 197 145 358 181 0 0 chr9 100341698 100341765 -41929679 + MIR SINE MIR 73 140 -68 1244 160 0 41 chr9 100341833 100342052 -41929392 + AluJb SINE Alu 86 295 -17 1635 155 10 30 chr9 100342118 100342421 -41929023 + AluJb SINE Alu 1 297 -15 2393 67 0 0 chr9 100342431 100342730 -41928714 + AluY SINE Alu 1 299 -12 2021 124 14 7 chr9 100342826 100343117 -41928327 - AluJo SINE Alu -19 293 1 618 284 186 42 chr9 100343485 100343957 -41927487 - L2 LINE L2 -5 3267 2723 265 127 0 73 chr9 100344311 100344366 -41927078 + 7SK RNA RNA 45 95 -98 211 271 0 0 chr9 100344572 100344620 -41926824 - L2 LINE L2 -221 3051 3004 1048 174 31 15 chr9 100344695 100344891 -41926553 + MER3 DNA MER1_type 11 209 0 2058 101 3 70 chr9 100345055 100345382 -41926062 - AluSx SINE Alu -7 305 1 309 26 0 0 chr9 100345682 100345720 -41925724 + (TG)n Simple_repeat Simple_repeat 2 39 0 778 283 182 54 chr9 100345900 100346493 -41924951 + L3 LINE CR1 731 1399 -178 524 264 16 0 chr9 100347352 100347473 -41923971 + Charlie1a DNA MER1_type 3 125 -1330 242 103 0 0 chr9 100347473 100347512 -41923932 + L1MB5 LINE L1 5896 5934 -244 407 91 18 0 chr9 100347512 100347567 -41923877 + AluSc SINE Alu 124 179 -130 347 160 28 94 chr9 100347669 100347775 -41923669 + FRAM SINE Alu 64 162 -4 1264 162 48 0 chr9 100347775 100348004 -41923440 + L1MB5 LINE L1 5925 6164 -10 199 356 68 63 chr9 100348202 100348407 -41923037 + L2 LINE L2 2896 3101 -171 267 279 0 0 chr9 100348602 100348663 -41922781 - MIR SINE MIR -28 234 174 206 191 48 0 chr9 100348899 100348941 -41922503 - MIR3 SINE MIR -11 197 154 716 68 0 3 chr9 100349152 100349373 -41922071 + AluY SINE Alu 1 296 -15 612 289 29 53 chr9 100349838 100350065 -41921379 + LTR16A LTR ERVL 171 405 -45 684 129 24 48 chr9 100350105 100350229 -41921215 + FLAM_A SINE Alu 22 142 0 378 324 151 6 chr9 100350418 100350597 -41920847 - MIR3 SINE MIR -2 206 2 2257 97 0 10 chr9 100351434 100351742 -41919702 - AluSx SINE Alu -7 305 1 2020 112 0 10 chr9 100352048 100352371 -41919073 + AluSq SINE Alu 2 321 0 272 116 0 0 chr9 100352372 100352415 -41919029 + L1ME2 LINE L1 5777 5819 -345 757 194 16 0 chr9 100352415 100352544 -41918900 + AluJb SINE Alu 2 132 -180 1279 204 67 32 chr9 100352556 100352700 -41918744 + L1ME2 LINE L1 5814 5951 -213 1944 117 11 0 chr9 100352700 100352983 -41918461 + AluSq SINE Alu 1 286 -27 249 33 0 0 chr9 100352985 100353015 -41918429 + (CAT)n Simple_repeat Simple_repeat 2 31 0 1279 204 67 32 chr9 100353015 100353180 -41918264 + L1ME2 LINE L1 5951 6137 -27 1668 132 59 4 chr9 100353215 100353335 -41918109 + AluJo SINE Alu 3 115 -197 275 0 0 28 chr9 100353335 100353371 -41918073 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1668 132 59 4 chr9 100353371 100353523 -41917921 + AluJo SINE Alu 115 290 -22 849 243 98 68 chr9 100353960 100354029 -41917415 - HAL1 LINE L1 0 2507 2441 1993 135 0 0 chr9 100354029 100354345 -41917099 + AluSx SINE Alu 6 321 0 849 243 98 68 chr9 100354345 100355250 -41916194 - HAL1 LINE L1 -66 2441 1386 604 270 26 45 chr9 100355327 100355551 -41915893 + HAL1 LINE L1 695 915 -1592 2089 105 0 22 chr9 100355551 100355864 -41915580 + AluSq SINE Alu 1 306 -7 604 270 26 45 chr9 100355864 100355906 -41915538 + HAL1 LINE L1 915 956 -1551 1343 139 70 83 chr9 100355910 100356211 -41915233 + AluJo SINE Alu 1 297 -15 307 250 42 52 chr9 100356211 100356307 -41915137 + L1MC4 LINE L1 6609 6703 -1339 281 213 16 47 chr9 100356369 100356496 -41914948 + HAL1 LINE L1 982 1104 -1403 * 546 238 83 36 chr9 100356490 100356658 -41914786 - HAL1 LINE L1 -1793 714 539 498 251 34 11 chr9 100356653 100356828 -41914616 - HAL1 LINE L1 -1232 1275 1097 * 327 229 12 24 chr9 100356964 100357047 -41914397 - HAL1 LINE L1 -1994 513 432 1975 117 0 0 chr9 100357150 100357423 -41914021 + AluSx SINE Alu 1 273 -39 343 192 10 30 chr9 100357423 100357522 -41913922 + A-rich Low_complexity Low_complexity 3 99 0 212 156 0 0 chr9 100357523 100357555 -41913889 + polypurine Low_complexity Low_complexity 4 35 0 267 313 39 43 chr9 100357603 100357715 -41913729 + L1ME4a LINE L1 4880 4991 -1155 2049 114 3 10 chr9 100357715 100358013 -41913431 + AluSx SINE Alu 3 298 -14 267 313 39 43 chr9 100358013 100358130 -41913314 + L1ME4a LINE L1 4991 5108 -1038 383 56 19 0 chr9 100358193 100358247 -41913197 + (TG)n Simple_repeat Simple_repeat 2 56 0 292 297 36 22 chr9 100358408 100358546 -41912898 + L1ME4a LINE L1 5329 5468 -2340 2092 151 61 10 chr9 100358552 100358763 -41912681 - L1MB7 LINE L1 -12 6172 5973 2105 87 7 20 chr9 100358763 100359061 -41912383 - AluSx SINE Alu -18 294 1 2092 151 61 10 chr9 100359061 100359241 -41912203 - L1MB7 LINE L1 -211 5973 5761 2234 61 40 7 chr9 100359264 100359561 -41911883 - AluY SINE Alu -4 307 1 1782 198 22 42 chr9 100359561 100359966 -41911478 - MLT1D LTR MaLR -26 479 83 1145 140 10 0 chr9 100359993 100360186 -41911258 - L1MB7 LINE L1 -397 5787 5593 * 3344 149 153 51 chr9 100360176 100360760 -41910684 - L1MB7 LINE L1 -47 6137 5614 1596 99 4 29 chr9 100360760 100361003 -41910441 + AluSq SINE Alu 1 237 -76 3344 149 153 51 chr9 100361003 100361173 -41910271 - L1MB7 LINE L1 -570 5614 5463 1905 102 58 0 chr9 100361173 100361448 -41909996 - AluSx SINE Alu -21 291 1 3344 149 153 51 chr9 100361448 100361715 -41909729 - L1MB7 LINE L1 -721 5463 5225 2455 48 0 0 chr9 100361715 100362010 -41909434 - AluY SINE Alu -16 295 1 3344 149 153 51 chr9 100362010 100362151 -41909293 - L1MB7 LINE L1 -959 5225 4842 759 253 100 36 chr9 100362157 100362735 -41908709 + L1ME4a LINE L1 5479 6121 0 271 211 28 0 chr9 100362777 100362848 -41908596 + L1ME4a LINE L1 5822 5894 -227 310 231 135 51 chr9 100363036 100363192 -41908252 + L1ME4a LINE L1 5953 6121 0 385 224 20 20 chr9 100363812 100363910 -41907534 - MIR3 SINE MIR -53 155 58 25 31 0 0 chr9 100364114 100364146 -41907298 + AT_rich Low_complexity Low_complexity 1 32 0 335 355 27 27 chr9 100364278 100364464 -41906980 + MIR SINE MIR 69 254 -8 445 233 174 12 chr9 100366231 100366403 -41905041 + MIR SINE MIR 20 219 -43 207 0 0 0 chr9 100366440 100366463 -41904981 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 25 0 0 0 chr9 100367582 100367607 -41903837 + GC_rich Low_complexity Low_complexity 1 25 0 285 216 18 18 chr9 100367712 100367823 -41903621 + (CCGCG)n Simple_repeat Simple_repeat 4 114 0 21 0 0 0 chr9 100367841 100367862 -41903582 + GC_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 100368341 100368373 -41903071 + GC_rich Low_complexity Low_complexity 1 32 0 27 81 0 0 chr9 100368580 100368642 -41902802 + GC_rich Low_complexity Low_complexity 1 62 0 32 57 0 0 chr9 100368760 100368813 -41902631 + GC_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr9 100369016 100369042 -41902402 + GC_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr9 100369289 100369312 -41902132 + GC_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr9 100369371 100369405 -41902039 + GC_rich Low_complexity Low_complexity 1 34 0 25 75 0 0 chr9 100369594 100369647 -41901797 + GC_rich Low_complexity Low_complexity 1 53 0 2156 87 13 0 chr9 100370362 100370671 -41900773 - AluSp SINE Alu 0 313 1 365 260 31 0 chr9 100370730 100370826 -41900618 - Charlie5 DNA MER1_type -2511 101 3 21 0 0 0 chr9 100371895 100371916 -41899528 + AT_rich Low_complexity Low_complexity 1 21 0 186 149 0 106 chr9 100372183 100372230 -41899214 + L2 LINE L2 2758 2799 -515 322 256 221 81 chr9 100372468 100372889 -41898555 - L1ME4a LINE L1 -1 6120 5641 1878 150 3 0 chr9 100372992 100373299 -41898145 + AluSq SINE Alu 1 308 -5 2118 94 3 13 chr9 100375364 100375672 -41895772 - AluSx SINE Alu -7 305 1 1561 177 24 0 chr9 100375676 100375964 -41895480 - AluJo SINE Alu -17 295 1 1879 117 3 3 chr9 100376188 100376470 -41894974 - AluSp SINE Alu -31 282 1 2308 93 0 0 chr9 100377010 100377312 -41894132 + AluSq SINE Alu 1 302 -11 445 114 0 51 chr9 100377375 100377454 -41893990 + FRAM/FAM SINE Alu 1 67 -109 281 175 62 25 chr9 100377476 100377556 -41893888 - L1ME4a LINE L1 -84 6037 5955 315 258 32 0 chr9 100377585 100377678 -41893766 + L1MA10 LINE L1 6221 6316 -18 28 0 0 0 chr9 100377686 100377714 -41893730 + AT_rich Low_complexity Low_complexity 1 28 0 1462 171 130 7 chr9 100377767 100378036 -41893408 + AluJb SINE Alu 1 302 0 600 338 40 4 chr9 100378055 100378280 -41893164 + MIR SINE MIR 24 256 -6 2146 116 0 3 chr9 100378376 100378687 -41892757 - AluSg SINE Alu 0 310 1 211 342 186 16 chr9 100378814 100379007 -41892437 - L2 LINE L2 -854 2460 2235 550 293 87 22 chr9 100379565 100379794 -41891650 + MIR SINE MIR 15 258 -4 355 133 33 0 chr9 100379807 100379867 -41891577 - MIR SINE MIR -115 147 86 217 262 16 16 chr9 100380305 100380366 -41891078 + MIR SINE MIR 195 255 -7 296 24 24 0 chr9 100380652 100380693 -41890751 + (CA)n Simple_repeat Simple_repeat 2 43 0 5066 208 54 55 chr9 100380732 100381494 -41889950 + L1M4 LINE L1 3205 3966 -2180 1408 168 39 18 chr9 100381494 100381774 -41889670 + AluJo SINE Alu 1 286 -26 189 0 0 0 chr9 100381781 100381802 -41889642 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 5066 208 54 55 chr9 100381802 100381824 -41889620 + L1M4 LINE L1 3972 3993 -2153 2032 96 61 0 chr9 100381824 100382117 -41889327 + AluSx SINE Alu 1 311 -1 5066 208 54 55 chr9 100382117 100382643 -41888801 + L1M4 LINE L1 3993 4524 -1622 2275 115 0 0 chr9 100382643 100382955 -41888489 + AluSx SINE Alu 1 312 0 5066 208 54 55 chr9 100382955 100383142 -41888302 + L1M4 LINE L1 4524 4710 -1436 442 51 0 51 chr9 100383144 100383203 -41888241 + AluSg/x SINE Alu 108 163 -149 1609 222 56 48 chr9 100383305 100383827 -41887617 - L1MEc LINE L1 -5834 562 37 975 258 32 89 chr9 100383839 100384277 -41887167 + L2 LINE L2 2901 3313 0 257 51 26 0 chr9 100384480 100384519 -41886925 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1079 127 6 0 chr9 100384522 100384679 -41886765 - AluSg/x SINE Alu -32 278 121 2026 118 3 3 chr9 100384714 100385002 -41886442 - AluSx SINE Alu -24 288 1 368 284 88 7 chr9 100385327 100385475 -41885969 + MIR SINE MIR 55 214 -48 210 261 0 0 chr9 100386140 100386186 -41885258 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 3359 75 11 47 chr9 100386706 100387176 -41884268 + MLT2A2 LTR ERVL 1 453 0 1181 179 5 14 chr9 100387227 100387439 -41884005 + MER63A DNA MER1_type 1 210 0 691 309 67 15 chr9 100388247 100388645 -41882799 + L2 LINE L2 2578 3065 -207 784 99 0 15 chr9 100389087 100389218 -41882226 + (TA)n Simple_repeat Simple_repeat 2 130 0 249 322 96 17 chr9 100389293 100389470 -41881974 - MIR SINE MIR -70 192 2 244 330 0 21 chr9 100390086 100390180 -41881264 + (CCCA)n Simple_repeat Simple_repeat 3 94 0 809 236 16 12 chr9 100390211 100391189 -41880255 + (TCCA)n Simple_repeat Simple_repeat 1 981 0 184 330 138 0 chr9 100391285 100391394 -41880050 - L2 LINE L2 -34 3279 3156 218 160 20 0 chr9 100391694 100391744 -41879700 + CT-rich Low_complexity Low_complexity 2 52 0 316 283 10 0 chr9 100391816 100391915 -41879529 + MER113 DNA MER1_type? 1 100 -421 202 286 0 0 chr9 100392428 100392477 -41878967 + (TG)n Simple_repeat Simple_repeat 2 50 0 309 220 165 0 chr9 100392642 100392733 -41878711 - MIR SINE MIR -12 250 145 407 267 116 37 chr9 100392747 100393130 -41878314 + LTR16A LTR ERVL 17 457 0 553 259 38 0 chr9 100393131 100393262 -41878182 - MIR SINE MIR -114 148 13 2094 119 3 0 chr9 100394181 100394475 -41876969 - AluSx SINE Alu -17 295 1 914 169 17 6 chr9 100394475 100394652 -41876792 + L1MB3 LINE L1 6005 6183 0 268 193 0 0 chr9 100394826 100394883 -41876561 + L1ME4a LINE L1 6064 6120 -1 675 248 10 142 chr9 100395219 100395425 -41876019 + MIR SINE MIR 4 161 -101 2376 165 66 9 chr9 100395425 100395867 -41875577 - MLT1C LTR MaLR 0 467 1 675 248 10 142 chr9 100395867 100395955 -41875489 + MIR SINE MIR 161 259 -3 222 360 9 54 chr9 100396369 100396480 -41874964 + MIR SINE MIR 40 145 -63 * 313 269 179 26 chr9 100396466 100396622 -41874822 - L2 LINE L2 0 3272 3093 189 299 186 0 chr9 100396695 100396792 -41874652 + L2 LINE L2 3154 3268 -4 347 313 47 31 chr9 100396802 100396930 -41874514 + MIR SINE MIR 13 142 -120 707 267 212 13 chr9 100396948 100397259 -41874185 - L2 LINE L2 0 3313 2941 226 304 0 0 chr9 100397274 100397343 -41874101 + MIR SINE MIR 194 262 0 183 299 0 0 chr9 100397643 100397710 -41873734 + (CACG)n Simple_repeat Simple_repeat 2 68 0 723 260 68 0 chr9 100398267 100398459 -41872985 - LTR16A1 LTR ERVL 0 457 253 969 203 79 52 chr9 100398593 100398815 -41872629 + L1MEc LINE L1 527 761 -5635 2444 82 0 16 chr9 100398815 100399121 -41872323 - AluSc SINE Alu -8 301 1 969 203 79 52 chr9 100399121 100399203 -41872241 + L1MEc LINE L1 761 839 -5557 365 286 87 8 chr9 100399203 100399329 -41872115 - L2 LINE L2 -404 2910 2775 229 250 87 67 chr9 100399471 100399575 -41871869 + MIR SINE MIR 66 171 -91 2119 123 0 10 chr9 100399685 100399970 -41871474 + AluSx SINE Alu 1 284 -28 306 0 0 0 chr9 100399970 100400004 -41871440 + (CA)n Simple_repeat Simple_repeat 2 35 0 181 312 13 65 chr9 100400074 100400151 -41871293 + MIR SINE MIR 114 186 -76 252 121 190 17 chr9 100400170 100400228 -41871216 - MLT1K LTR MaLR 0 588 521 491 250 142 54 chr9 100400257 100400517 -41870927 - MLT1K LTR MaLR -165 423 141 294 195 221 58 chr9 100400610 100400764 -41870680 + LTR33 LTR ERVL 47 225 -296 2012 193 15 115 chr9 100401014 100401614 -41869830 - MLT1F LTR MaLR 0 542 3 1952 144 3 20 chr9 100402020 100402325 -41869119 - AluSx SINE Alu -12 300 1 290 296 71 0 chr9 100403021 100403119 -41868325 - L2 LINE L2 0 3313 3209 377 226 36 66 chr9 100403246 100403398 -41868046 + MIR SINE MIR 19 163 -58 251 222 44 33 chr9 100403497 100403587 -41867857 + L2 LINE L2 3223 3313 0 291 54 0 0 chr9 100403792 100403829 -41867615 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 24 67 0 0 chr9 100403911 100403956 -41867488 + AT_rich Low_complexity Low_complexity 1 45 0 8231 18 0 1 chr9 100403991 100404982 -41866462 - L1PA3 LINE L1 -1439 4707 3718 7525 30 15 0 chr9 100404982 100406424 -41865020 + L1PA3 LINE L1 4716 6155 0 348 43 0 0 chr9 100406498 100406544 -41864900 + (CA)n Simple_repeat Simple_repeat 1 46 0 718 330 64 14 chr9 100406583 100407375 -41864069 - L1ME LINE L1 -507 5657 4808 2615 187 38 73 chr9 100407375 100407979 -41863465 - MER119 DNA MER1_type 0 583 1 718 330 64 14 chr9 100407979 100408070 -41863374 - L1ME LINE L1 -1356 4808 4723 802 299 44 50 chr9 100408215 100408553 -41862891 + L2 LINE L2 2917 3252 -20 629 305 116 53 chr9 100410278 100410451 -41860993 + L2 LINE L2 2392 2553 -719 1967 143 13 19 chr9 100410451 100410485 -41860959 - AluJo SINE Alu 0 312 279 180 0 0 0 chr9 100410485 100410505 -41860939 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1967 143 13 19 chr9 100410505 100410784 -41860660 - AluJo SINE Alu -33 279 1 629 305 116 53 chr9 100410784 100411423 -41860021 + L2 LINE L2 2553 3256 -16 509 288 0 8 chr9 100411439 100411571 -41859873 - MIR SINE MIR -60 148 18 667 265 64 16 chr9 100412132 100412423 -41859021 - LTR33A LTR ERVL -11 512 292 542 206 121 57 chr9 100412419 100412667 -41858777 - LTR50 LTR ERVL -531 264 1 * 895 130 56 102 chr9 100412816 100413032 -41858412 - MER63A DNA MER1_type -4 206 1 491 264 33 66 chr9 100413174 100413356 -41858088 + MIR SINE MIR 3 178 -84 21 82 0 0 chr9 100413624 100413673 -41857771 + AT_rich Low_complexity Low_complexity 1 49 0 1534 253 48 23 chr9 100413979 100414417 -41857027 - MLT1J2 LTR MaLR -1 449 1 820 350 66 19 chr9 100414481 100415053 -41856391 + L2 LINE L2 2712 3310 -3 3745 140 67 2 chr9 100415914 100416527 -41854917 - MER39B LTR ERV1 0 653 1 1773 169 0 38 chr9 100417167 100417481 -41853963 + AluJo SINE Alu 1 302 -10 290 328 53 53 chr9 100417508 100417697 -41853747 - MIR SINE MIR 0 262 74 272 269 97 43 chr9 100417997 100418183 -41853261 - LTR33A LTR ERVL -2 521 326 259 200 0 0 chr9 100418201 100418251 -41853193 + LTR33A LTR ERVL 473 522 -1 795 297 42 11 chr9 100419114 100419397 -41852047 - LTR16A LTR ERVL -11 439 148 700 301 91 27 chr9 100419613 100420089 -41851355 + L2 LINE L2 2571 3080 -233 920 164 67 12 chr9 100420092 100420257 -41851187 + AluJb SINE Alu 131 304 -8 205 219 0 0 chr9 100420963 100421004 -41850440 - L2 LINE L2 -18 3254 3214 478 321 84 5 chr9 100421939 100422129 -41849315 + MIR SINE MIR 2 206 -56 205 179 0 0 chr9 100422857 100422896 -41848548 + T-rich Low_complexity Low_complexity 2 40 0 1965 163 33 3 chr9 100423154 100423485 -41847959 - MER2 DNA MER2_type -3 341 1 968 172 0 0 chr9 100423601 100423752 -41847692 - FAM SINE Alu -19 166 16 906 278 47 25 chr9 100423769 100424240 -41847204 - L1MC5 LINE L1 -29 7932 7452 205 250 73 44 chr9 100424273 100424341 -41847103 - MIR3 SINE MIR -30 178 109 522 303 67 26 chr9 100425040 100425235 -41846209 + MIR SINE MIR 2 204 -58 242 95 24 0 chr9 100425243 100425285 -41846159 + (TA)n Simple_repeat Simple_repeat 2 44 0 505 201 34 54 chr9 100425464 100425613 -41845831 - MIR3 SINE MIR -29 179 34 2516 82 0 0 chr9 100425725 100426028 -41845416 - AluSg SINE Alu -7 303 1 1009 258 35 3 chr9 100426233 100426520 -41844924 + LTR16C LTR ERVL 165 460 -31 234 238 124 57 chr9 100427111 100427216 -41844228 - L2 LINE L2 -8 3264 3153 274 180 40 0 chr9 100427690 100427740 -41843704 - L3 LINE CR1 -104 1473 1422 543 321 69 38 chr9 100428259 100428815 -41842629 - L1ME2 LINE L1 -257 5907 5318 1768 146 3 72 chr9 100428815 100429150 -41842294 - AluJo SINE Alu 0 312 1 543 321 69 38 chr9 100429150 100429398 -41842046 - L1ME2 LINE L1 -846 5318 5079 415 271 33 121 chr9 100429423 100429670 -41841774 - L2 LINE L2 -31 3241 3029 2320 111 7 0 chr9 100429670 100429968 -41841476 - AluSg SINE Alu -10 300 1 415 271 33 121 chr9 100429968 100430052 -41841392 - L2 LINE L2 -243 3029 2939 372 319 65 5 chr9 100430353 100430538 -41840906 + L3 LINE CR1 1201 1396 -181 248 297 152 18 chr9 100430529 100430694 -41840750 - MIR3 SINE MIR -1 207 21 * 250 366 0 0 chr9 100431479 100431572 -41839872 - MIR SINE MIR -3 259 167 427 197 13 0 chr9 100431630 100431706 -41839738 + L2 LINE L2 3196 3272 0 237 222 0 0 chr9 100431860 100431905 -41839539 + L2 LINE L2 3266 3310 -3 251 367 61 15 chr9 100431917 100432113 -41839331 + MIR SINE MIR 8 212 -50 231 319 50 25 chr9 100432939 100433058 -41838386 + MIR SINE MIR 18 139 -69 551 330 104 34 chr9 100433224 100433955 -41837489 + L2 LINE L2 1830 2611 -703 * 891 295 164 28 chr9 100433950 100434584 -41836860 + L3 LINE CR1 762 1481 -96 264 362 99 40 chr9 100435194 100435517 -41835927 + L2 LINE L2 2931 3272 0 852 180 0 0 chr9 100435525 100435754 -41835690 + (TGGA)n Simple_repeat Simple_repeat 1 229 0 860 172 0 6 chr9 100435769 100435949 -41835495 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2084 127 7 33 chr9 100436164 100436471 -41834973 - AluSx SINE Alu -13 299 1 2218 120 3 0 chr9 100437003 100437302 -41834142 + AluSx SINE Alu 1 300 -12 29 0 0 0 chr9 100437362 100437391 -41834053 + AT_rich Low_complexity Low_complexity 1 29 0 2332 93 0 7 chr9 100437471 100437773 -41833671 - AluY SINE Alu -11 300 1 2499 58 0 3 chr9 100438310 100438602 -41832842 - AluSg1 SINE Alu -18 291 1 445 168 84 0 chr9 100438972 100439067 -41832377 + MER112 DNA MER1_type 158 260 0 483 284 16 8 chr9 100439590 100439717 -41831727 - L2 LINE L2 -3 3310 3183 1378 175 45 29 chr9 100440214 100440522 -41830922 - MLT1A2 LTR MaLR 0 374 62 1326 134 0 0 chr9 100440523 100440709 -41830735 + AluSg/x SINE Alu 116 301 -11 234 77 51 0 chr9 100440711 100440750 -41830694 + L1MD2 LINE L1 6105 6145 -214 * 718 209 13 0 chr9 100440748 100440901 -41830543 + L1MD3 LINE L1 7831 7985 -10 1776 145 57 3 chr9 100440908 100441204 -41830240 + AluJb SINE Alu 1 312 0 1291 209 29 26 chr9 100441351 100441691 -41829753 - L1MB8 LINE L1 0 6178 5838 533 270 26 53 chr9 100441691 100441843 -41829601 - MIR SINE MIR -51 211 64 1015 134 58 0 chr9 100441863 100442035 -41829409 - Tigger5 DNA MER2_type -35 2288 2107 225 0 0 0 chr9 100442221 100442246 -41829198 + (A)n Simple_repeat Simple_repeat 1 25 0 1506 108 204 8 chr9 100442625 100442875 -41828569 - AluSg1 SINE Alu -10 299 1 1126 227 5 0 chr9 100443548 100443768 -41827676 - MER58A DNA MER1_type 0 224 4 1018 228 0 0 chr9 100444147 100444336 -41827108 + MER5A DNA MER1_type 1 189 0 2287 83 0 77 chr9 100445726 100446051 -41825393 - AluSx SINE Alu -12 300 1 577 232 45 19 chr9 100446141 100446296 -41825148 - L2 LINE L2 -5 3308 3150 329 169 17 0 chr9 100446973 100447032 -41824412 + MIR SINE MIR 86 145 -117 238 218 18 18 chr9 100447709 100447764 -41823680 - L2 LINE L2 -85 3187 3133 216 287 92 23 chr9 100447928 100448015 -41823429 - MIR SINE MIR -85 123 31 182 302 36 101 chr9 100448620 100448759 -41822685 - MIR SINE MIR -113 149 20 2012 140 0 0 chr9 100448943 100449250 -41822194 + AluJb SINE Alu 1 307 -5 208 316 53 0 chr9 100449971 100450028 -41821416 - L2 LINE L2 -66 3206 3147 2028 119 7 3 chr9 100450032 100450334 -41821110 - AluSx SINE Alu -9 303 1 717 159 66 33 chr9 100450825 100450976 -41820468 - MIR SINE MIR -87 175 20 1934 113 11 0 chr9 100451590 100451874 -41819570 - AluSx SINE Alu -25 287 1 567 313 76 10 chr9 100452802 100453000 -41818444 + MIR SINE MIR 3 213 -49 627 278 39 24 chr9 100453140 100453324 -41818120 - MIR3 SINE MIR -3 205 11 1980 121 0 26 chr9 100453580 100453893 -41817551 + AluSx SINE Alu 1 305 -7 2045 93 0 21 chr9 100454531 100454841 -41816603 - AluSq SINE Alu 0 304 1 702 262 106 25 chr9 100455408 100455645 -41815799 + MIR SINE MIR 7 262 0 277 281 34 34 chr9 100455688 100455777 -41815667 + MIR3 SINE MIR 120 208 0 2767 10 0 0 chr9 100456737 100457048 -41814396 - AluYa5 SINE Alu 0 311 1 468 210 13 57 chr9 100457480 100457637 -41813807 + MIR SINE MIR 43 191 -70 733 134 31 16 chr9 100458094 100458221 -41813223 - FLAM_C SINE Alu -14 129 1 332 264 146 14 chr9 100458438 100458582 -41812862 - MIR SINE MIR -59 203 41 2228 87 10 3 chr9 100458583 100458882 -41812562 + AluSx SINE Alu 1 301 -11 2324 70 0 16 chr9 100459117 100459433 -41812011 - AluY SINE Alu 0 311 1 339 312 55 63 chr9 100459722 100459975 -41811469 - MIR SINE MIR -9 253 3 818 246 45 27 chr9 100461284 100461504 -41809940 - MER58A DNA MER1_type 0 224 1 24 32 0 0 chr9 100462629 100462660 -41808784 + AT_rich Low_complexity Low_complexity 1 31 0 1487 157 13 56 chr9 100463166 100463471 -41807973 + AluJo SINE Alu 1 292 -20 416 176 0 0 chr9 100463589 100463663 -41807781 - AluJ/FLAM SINE Alu -237 75 2 189 244 0 133 chr9 100463663 100463753 -41807691 + L2 LINE L2 3036 3113 -159 12963 86 28 40 chr9 100463775 100464652 -41806792 + Charlie3 DNA MER1_type 1 887 -1819 1980 129 17 0 chr9 100464652 100464954 -41806490 + AluSx SINE Alu 1 307 -5 12963 86 28 40 chr9 100464954 100465956 -41805488 + Charlie3 DNA MER1_type 887 1857 -849 1362 106 181 0 chr9 100465956 100466183 -41805261 - L1PA11 LINE L1 -17 6157 5890 5545 75 6 8 chr9 100466183 100466901 -41804543 + Charlie3 DNA MER1_type 1991 2706 -4 1813 130 73 52 chr9 100467330 100467660 -41803784 - MER1B DNA MER1_type 0 337 1 352 257 46 28 chr9 100468084 100468193 -41803251 - L2 LINE L2 -6 3307 3197 201 39 0 0 chr9 100468204 100468230 -41803214 + (T)n Simple_repeat Simple_repeat 1 26 0 726 202 0 0 chr9 100468243 100468367 -41803077 + FLAM_C SINE Alu 2 125 -18 265 275 169 31 chr9 100468450 100468610 -41802834 - L2 LINE L2 -193 3079 2898 550 247 11 39 chr9 100468809 100468987 -41802457 - L1MC5 LINE L1 -49 7912 7740 355 264 0 0 chr9 100469210 100469320 -41802124 + GA-rich Low_complexity Low_complexity 3 112 0 198 0 0 0 chr9 100470664 100470686 -41800758 + (TGG)n Simple_repeat Simple_repeat 2 23 0 2281 68 0 14 chr9 100470686 100470971 -41800473 - AluY SINE Alu -28 283 1 1828 142 3 14 chr9 100470973 100471268 -41800176 - AluSx SINE Alu -20 292 1 932 140 90 55 chr9 100471505 100471558 -41799886 + AluJo SINE Alu 85 135 -177 1407 134 166 8 chr9 100471558 100471811 -41799633 + AluSg1 SINE Alu 1 293 -16 932 140 90 55 chr9 100471811 100471957 -41799487 + AluJo SINE Alu 135 291 -21 2039 54 0 4 chr9 100472105 100472363 -41799081 + AluY SINE Alu 39 295 -16 430 219 115 0 chr9 100472554 100472650 -41798794 - MIR SINE MIR -71 191 85 2007 124 7 0 chr9 100472695 100472994 -41798450 - AluSq SINE Alu -12 301 1 213 250 14 14 chr9 100473303 100473375 -41798069 + GA-rich Low_complexity Low_complexity 3 74 0 28 0 0 0 chr9 100473777 100473805 -41797639 + AT_rich Low_complexity Low_complexity 1 28 0 516 257 101 14 chr9 100474193 100474341 -41797103 + MIR3 SINE MIR 41 201 -7 188 33 0 33 chr9 100475048 100475078 -41796366 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2151 109 3 10 chr9 100475864 100476176 -41795268 - AluSx SINE Alu -2 310 1 1523 171 50 0 chr9 100476755 100477035 -41794409 - AluJb SINE Alu -18 294 1 252 343 63 29 chr9 100477137 100477312 -41794132 + MIR3 SINE MIR 3 183 -25 457 272 59 15 chr9 100477641 100477777 -41793667 - MIR SINE MIR -73 189 48 2106 117 3 3 chr9 100478032 100478332 -41793112 + AluSq SINE Alu 1 300 -13 240 337 12 0 chr9 100478376 100478462 -41792982 + MIR SINE MIR 63 149 -59 208 197 213 0 chr9 100479065 100479126 -41792318 - MIR3 SINE MIR -53 155 82 2072 129 9 113 chr9 100479902 100480143 -41791301 - MLT1B LTR MaLR 0 390 126 2012 115 0 3 chr9 100480143 100480431 -41791013 - AluSx SINE Alu -25 287 1 2072 129 9 113 chr9 100480431 100480448 -41790996 - MLT1B LTR MaLR -264 126 109 912 199 0 0 chr9 100480448 100480614 -41790830 - AluJo SINE Alu 0 302 137 2072 129 9 113 chr9 100480614 100480789 -41790655 - MLT1B LTR MaLR -281 109 1 335 304 162 0 chr9 100481207 100481355 -41790089 - L3 LINE CR1 -11 1566 1395 2116 85 7 0 chr9 100481363 100481670 -41789774 + AluSg SINE Alu 1 309 0 1786 159 0 7 chr9 100481703 100482005 -41789439 + AluJb SINE Alu 3 302 -10 547 202 132 0 chr9 100482157 100482271 -41789173 - AluJo SINE Alu -173 129 1 229 170 0 0 chr9 100482283 100482330 -41789114 - Alu SINE Alu 0 301 255 211 293 103 0 chr9 100482812 100482870 -41788574 - L2 LINE L2 0 3272 3209 284 331 145 46 chr9 100482928 100483294 -41788150 - L2 LINE L2 -62 3210 2809 2294 90 0 0 chr9 100483308 100483607 -41787837 + AluSg SINE Alu 1 299 -11 2023 124 0 37 chr9 100483683 100484006 -41787438 + AluSx SINE Alu 1 311 -1 1481 168 24 7 chr9 100484299 100484591 -41786853 - AluJo SINE Alu -13 299 3 2448 39 10 3 chr9 100484799 100485105 -41786339 - AluY SINE Alu -3 308 1 1940 128 7 0 chr9 100485105 100485385 -41786059 - AluSx SINE Alu -29 283 1 1289 90 0 0 chr9 100485496 100485663 -41785781 - AluSq SINE Alu -14 299 133 186 43 0 0 chr9 100485663 100485686 -41785758 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2274 64 3 0 chr9 100485686 100485968 -41785476 - AluY SINE Alu -28 283 1 2233 92 0 0 chr9 100485970 100486263 -41785181 - AluSq SINE Alu -20 293 1 1054 196 0 0 chr9 100487106 100487279 -41784165 + FAM SINE Alu 1 173 -2 1616 167 3 41 chr9 100487291 100487609 -41783835 + AluJo SINE Alu 1 306 -6 2113 129 3 0 chr9 100487795 100488106 -41783338 + AluSx SINE Alu 1 312 0 4114 186 66 48 chr9 100488806 100489104 -41782340 + L1MD1 LINE L1 3951 4242 -2000 468 51 0 0 chr9 100489104 100489163 -41782281 + (CA)n Simple_repeat Simple_repeat 2 60 0 4114 186 66 48 chr9 100489163 100489846 -41781598 + L1MD1 LINE L1 4242 4911 -1331 1565 189 32 0 chr9 100489846 100490131 -41781313 + AluJo SINE Alu 2 295 -17 4114 186 66 48 chr9 100490131 100490172 -41781272 + L1MD1 LINE L1 4911 4950 -1292 623 173 10 0 chr9 100490172 100490276 -41781168 + U6 snRNA snRNA 2 106 -1 4114 186 66 48 chr9 100490276 100490880 -41780564 + L1MD1 LINE L1 4950 5607 -635 2109 123 7 0 chr9 100490881 100491189 -41780255 + AluSx SINE Alu 2 311 -1 1220 156 20 24 chr9 100491189 100491439 -41780005 + L1MD1 LINE L1 5813 6061 -181 1672 145 64 3 chr9 100491630 100491912 -41779532 + AluJb SINE Alu 1 299 -13 675 210 26 1 chr9 100491912 100492082 -41779362 - L1ME LINE L1 -650 5514 5332 1905 103 0 0 chr9 100492213 100492474 -41778970 - AluSx SINE Alu -1 311 51 445 296 107 54 chr9 100493046 100493326 -41778118 + L2 LINE L2 3012 3306 -7 187 225 25 0 chr9 100493819 100493859 -41777585 - L2 LINE L2 -6 3307 3267 2184 91 40 0 chr9 100493870 100494167 -41777277 + AluSg SINE Alu 1 309 -1 1944 125 0 0 chr9 100494181 100494461 -41776983 + AluSx SINE Alu 22 301 -11 1967 130 3 10 chr9 100494462 100494769 -41776675 + AluSp SINE Alu 2 306 -7 2065 107 0 0 chr9 100495037 100495342 -41776102 + AluSx SINE Alu 1 305 0 301 259 92 70 chr9 100495366 100495594 -41775850 - L2 LINE L2 -181 3091 2859 736 169 0 23 chr9 100495843 100495973 -41775471 - FLAM_A SINE Alu -6 127 1 1935 127 0 3 chr9 100495979 100496293 -41775151 - AluSx SINE Alu 0 313 1 2110 100 3 3 chr9 100496710 100497010 -41774434 + AluSg SINE Alu 1 300 -10 833 144 6 81 chr9 100497098 100497238 -41774206 - AluJ SINE Alu -18 294 168 5183 78 16 1 chr9 100497238 100497919 -41773525 + LTR8 LTR ERV1 1 691 0 833 144 6 81 chr9 100497919 100497952 -41773492 - AluJ SINE Alu -144 168 134 855 153 0 0 chr9 100497953 100498084 -41773360 - AluJ SINE Alu -170 132 2 2261 84 0 0 chr9 100498596 100498894 -41772550 - AluSg1 SINE Alu -9 300 3 907 142 0 0 chr9 100498896 100499030 -41772414 - AluSq/x SINE Alu -179 134 1 1635 120 8 15 chr9 100499030 100499296 -41772148 - MER41B-int LTR ERV1 -216 6047 5784 1008 70 8 0 chr9 100499296 100499425 -41772019 - AluSq/x SINE Alu -182 131 2 1133 121 6 0 chr9 100499437 100499611 -41771833 - AluSp SINE Alu -17 296 122 2176 106 0 3 chr9 100499612 100499924 -41771520 - AluY SINE Alu 0 311 1 677 87 113 81 chr9 100499924 100499954 -41771490 - MER41B-int LTR ERV1 -4813 1945 1917 2193 87 3 0 chr9 100499954 100500253 -41771191 + AluY SINE Alu 1 300 -11 677 87 113 81 chr9 100500253 100500407 -41771037 - MER41B-int LTR ERV1 -4841 1917 1755 3236 83 50 36 chr9 100500409 100500531 -41770913 - MER41B-int LTR ERV1 -4259 2339 2220 2226 92 0 0 chr9 100500531 100500825 -41770619 + AluSc SINE Alu 1 294 -15 3236 83 50 36 chr9 100500825 100501124 -41770320 - MER41B-int LTR ERV1 -4378 2220 1905 1992 109 39 0 chr9 100501124 100501408 -41770036 - AluSx SINE Alu -17 295 1 3236 83 50 36 chr9 100501408 100501561 -41769883 - MER41B-int LTR ERV1 -4693 1905 1756 225 65 0 0 chr9 100501569 100501600 -41769844 + (CA)n Simple_repeat Simple_repeat 2 32 0 5170 119 77 49 chr9 100501603 100502304 -41769140 - MER41B-int LTR ERV1 -5608 1150 470 2300 94 0 0 chr9 100502304 100502613 -41768831 - AluSc SINE Alu 0 309 1 5170 119 77 49 chr9 100502613 100502778 -41768666 - MER41B-int LTR ERV1 -6288 470 254 1799 153 7 3 chr9 100502778 100503073 -41768371 + AluSx SINE Alu 7 302 -10 5170 119 77 49 chr9 100503073 100503136 -41768308 - MER41B-int LTR ERV1 -6504 254 194 2403 160 12 2 chr9 100503254 100503653 -41767791 + MER57A LTR ERV1 1 403 0 5504 122 2 28 chr9 100503653 100504373 -41767071 + MER57A-int LTR ERV1 1 699 -6838 2158 104 10 0 chr9 100504373 100504680 -41766764 - AluSq SINE Alu -3 310 1 5504 122 2 28 chr9 100504680 100504786 -41766658 + MER57A-int LTR ERV1 699 806 -6731 1234 159 11 0 chr9 100504779 100504968 -41766476 + MER41-int LTR ERV1 361 551 -5395 * 2101 152 33 25 chr9 100504968 100505329 -41766115 + THE1B LTR MaLR 1 364 0 340 122 0 0 chr9 100505329 100505378 -41766066 + THE1B-int LTR MaLR 1 49 -1531 6506 108 16 24 chr9 100505389 100505725 -41765719 + MER41-int LTR ERV1 2781 3118 -4419 2075 127 0 3 chr9 100505725 100506025 -41765419 + AluSg SINE Alu 1 299 -11 6506 108 16 24 chr9 100506025 100506670 -41764774 + MER41-int LTR ERV1 3118 3754 -3783 1973 120 7 0 chr9 100506683 100506974 -41764470 + AluSg SINE Alu 1 293 -17 2265 107 0 0 chr9 100507001 100507311 -41764133 + AluSx SINE Alu 1 310 -2 3319 149 6 0 chr9 100507311 100507813 -41763631 - MER41B LTR ERV1 -130 505 1 2166 178 15 2 chr9 100507816 100508214 -41763230 - MER57A LTR ERV1 0 403 1 5745 88 120 99 chr9 100508214 100508723 -41762721 - MER57A-int LTR ERV1 0 7537 7040 2066 120 3 0 chr9 100508723 100509014 -41762430 - AluSx SINE Alu -19 293 2 5745 88 120 99 chr9 100509014 100509626 -41761818 - MER57A-int LTR ERV1 -497 7040 6392 14487 136 56 60 chr9 100509626 100510448 -41760996 - HUERS-P1 LTR ERV1 -3443 2820 1996 1992 127 7 0 chr9 100510448 100510747 -41760697 - AluSp SINE Alu -12 301 1 14487 136 56 60 chr9 100510747 100511744 -41759700 - HUERS-P1 LTR ERV1 -4267 1996 1013 297 0 0 0 chr9 100511744 100511777 -41759667 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 14487 136 56 60 chr9 100511777 100512787 -41758657 - HUERS-P1 LTR ERV1 -5250 1013 1 2997 115 29 110 chr9 100512789 100512959 -41758485 - LTR8 LTR ERV1 -2 689 507 2186 104 3 0 chr9 100512959 100513256 -41758188 - AluSq SINE Alu -11 302 5 2997 115 29 110 chr9 100513256 100513676 -41757768 - LTR8 LTR ERV1 -184 507 147 2223 74 3 7 chr9 100513685 100513981 -41757463 - AluSx SINE Alu -17 295 1 254 280 64 10 chr9 100513994 100514111 -41757333 + MIR SINE MIR 18 131 -77 223 369 135 27 chr9 100514118 100514340 -41757104 - MIR SINE MIR -12 250 5 30 59 0 0 chr9 100514524 100514575 -41756869 + GC_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 100514688 100514709 -41756735 + GC_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 100514912 100514946 -41756498 + GC_rich Low_complexity Low_complexity 1 34 0 241 307 167 19 chr9 100515041 100515256 -41756188 + L2 LINE L2 2576 2822 -492 690 252 110 18 chr9 100515378 100515596 -41755848 + MIR SINE MIR 13 250 -12 299 167 0 0 chr9 100515776 100515830 -41755614 - Alu SINE Alu 0 302 249 1887 123 29 19 chr9 100515849 100516158 -41755286 - AluJb SINE Alu 0 312 1 556 247 123 18 chr9 100516224 100516394 -41755050 - MIR SINE MIR 0 262 75 794 145 0 0 chr9 100516587 100516704 -41754740 + FLAM_C SINE Alu 3 119 -24 346 276 179 0 chr9 100516738 100516872 -41754572 + MIR3 SINE MIR 40 197 -11 2355 77 0 0 chr9 100516965 100517263 -41754181 - AluY SINE Alu -12 299 2 1852 160 0 0 chr9 100517362 100517656 -41753788 - AluJo SINE Alu -18 294 1 306 283 97 76 chr9 100517943 100518088 -41753356 - MIR3 SINE MIR -51 157 10 1947 109 3 7 chr9 100518328 100518632 -41752812 + AluSq SINE Alu 1 303 0 2283 102 0 0 chr9 100519136 100519441 -41752003 + AluSx SINE Alu 1 305 -7 2279 78 3 3 chr9 100519441 100519768 -41751676 + AluSc SINE Alu 1 327 0 1563 160 56 3 chr9 100519880 100520167 -41751277 + AluJo SINE Alu 1 302 -10 356 253 188 26 chr9 100520385 100520725 -41750719 - L1ME4a LINE L1 -3 6118 5724 588 131 0 10 chr9 100520756 100520855 -41750589 + L1MD2 LINE L1 6262 6359 0 1676 130 43 14 chr9 100520864 100521170 -41750274 - AluSx SINE Alu 0 314 1 2044 126 7 0 chr9 100521173 100521483 -41749961 - AluSx SINE Alu 0 312 1 1685 158 30 34 chr9 100521486 100521784 -41749660 - AluJo SINE Alu -15 297 1 283 240 157 0 chr9 100521789 100521910 -41749534 - L1ME4a LINE L1 -392 5729 5590 2091 108 0 7 chr9 100522200 100522497 -41748947 - AluSx SINE Alu -17 295 1 365 254 8 71 chr9 100522575 100522701 -41748743 - MIR SINE MIR -117 145 28 2098 88 0 79 chr9 100523250 100523580 -41747864 - AluSq SINE Alu -9 304 1 2345 68 3 3 chr9 100523610 100523902 -41747542 + THE1A LTR MaLR 1 292 -63 299 236 28 38 chr9 100523907 100524013 -41747431 - MARNA DNA Mariner -468 118 14 1142 182 13 44 chr9 100524168 100524393 -41747051 + Charlie1 DNA MER1_type 3 220 -2541 4133 173 46 37 chr9 100524406 100524595 -41746849 - L1MB8 LINE L1 -26 6152 5966 2150 121 0 0 chr9 100524595 100524892 -41746552 - AluSx SINE Alu -15 297 1 4133 173 46 37 chr9 100524892 100525655 -41745789 - L1MB8 LINE L1 -212 5966 5196 1824 169 0 7 chr9 100525655 100525963 -41745481 - AluJb SINE Alu -6 306 1 4133 173 46 37 chr9 100525963 100526072 -41745372 - L1MB8 LINE L1 -982 5196 5089 1827 138 3 17 chr9 100526079 100526375 -41745069 - AluSx SINE Alu -15 297 6 3487 208 29 61 chr9 100526413 100526473 -41744971 + L1MD2 LINE L1 5426 5486 -873 1526 163 6 51 chr9 100526473 100526786 -41744658 + AluJo SINE Alu 1 299 -13 3487 208 29 61 chr9 100526786 100527216 -41744228 + L1MD2 LINE L1 5486 5810 -549 2155 108 0 0 chr9 100527216 100527513 -41743931 - AluSg SINE Alu -13 297 1 3487 208 29 61 chr9 100527513 100528046 -41743398 + L1MD2 LINE L1 5810 6359 0 2141 116 7 0 chr9 100528056 100528359 -41743085 - AluSx SINE Alu -7 305 1 29 21 0 21 chr9 100528362 100528389 -41743055 + AT_rich Low_complexity Low_complexity 1 28 -18 1925 114 7 0 chr9 100528389 100528661 -41742783 - AluSq SINE Alu -39 274 1 29 21 0 21 chr9 100528661 100528680 -41742764 + AT_rich Low_complexity Low_complexity 28 46 0 1730 155 3 26 chr9 100528749 100529053 -41742391 - AluJo SINE Alu -15 297 1 578 328 84 0 chr9 100529267 100529505 -41741939 + MIR SINE MIR 5 262 0 277 280 21 0 chr9 100529556 100529649 -41741795 + MIR SINE MIR 43 137 -71 261 339 89 6 chr9 100530015 100530195 -41741249 + MIR SINE MIR 32 226 -36 2216 85 3 0 chr9 100530355 100530649 -41740795 - AluSg SINE Alu -14 296 2 2406 81 0 0 chr9 100531214 100531524 -41739920 - AluSg SINE Alu 0 310 1 1765 154 4 0 chr9 100531755 100532027 -41739417 - AluJb SINE Alu -39 273 1 1123 185 0 40 chr9 100532967 100533194 -41738250 + AluJo SINE Alu 3 220 -92 301 77 0 77 chr9 100533194 100533246 -41738198 + FLAM SINE Alu 86 133 0 565 137 0 48 chr9 100533307 100533453 -41737991 + (GGGA)n Simple_repeat Simple_repeat 4 142 0 697 188 67 12 chr9 100533628 100533793 -41737651 + L1MA10 LINE L1 6151 6324 -10 2219 76 31 0 chr9 100534319 100534607 -41736837 - AluSx SINE Alu -15 297 1 806 142 0 22 chr9 100535070 100535204 -41736240 - FLAM_C SINE Alu -12 131 1 886 141 0 15 chr9 100535316 100535451 -41735993 - FLAM_C SINE Alu 0 133 1 552 204 74 0 chr9 100535501 100535609 -41735835 + AluJo SINE Alu 125 240 -72 395 211 40 105 chr9 100535616 100535768 -41735676 - MIR SINE MIR -54 208 67 2125 110 17 0 chr9 100536495 100536796 -41734648 + AluSx SINE Alu 1 306 -6 464 218 11 54 chr9 100536796 100536906 -41734538 - L1P4 LINE L1 -391 5770 5662 361 236 74 40 chr9 100537044 100537192 -41734252 - MIR3 SINE MIR -55 153 1 21 0 0 0 chr9 100537519 100537540 -41733904 + AT_rich Low_complexity Low_complexity 1 21 0 2022 142 0 0 chr9 100537873 100538182 -41733262 + AluSx SINE Alu 1 309 -3 486 247 253 0 chr9 100538514 100538688 -41732756 - MIR SINE MIR 0 262 45 274 194 0 30 chr9 100540291 100540358 -41731086 + MIR SINE MIR 81 145 -63 473 269 50 44 chr9 100541541 100541723 -41729721 - L2 LINE L2 -1 3312 3130 530 196 11 0 chr9 100541724 100541816 -41729628 + FAM SINE Alu 1 93 -92 265 370 22 0 chr9 100541872 100541964 -41729480 + L3 LINE CR1 1410 1503 -74 298 215 15 15 chr9 100542120 100542185 -41729259 - L2 LINE L2 -3 3269 3205 1260 91 6 6 chr9 100542612 100542787 -41728657 - AluSg/x SINE Alu -13 299 125 401 202 147 39 chr9 100542796 100542925 -41728519 - MIR SINE MIR -45 217 75 695 265 101 5 chr9 100543205 100543424 -41728020 + MIR SINE MIR 2 241 -21 234 206 29 15 chr9 100543707 100543775 -41727669 - MER116 DNA Mariner -11 69 1 262 298 122 43 chr9 100544677 100544932 -41726512 - L2 LINE L2 -457 2857 2583 311 200 15 15 chr9 100545008 100545073 -41726371 - L2 LINE L2 -3 3269 3205 24 32 0 0 chr9 100545677 100545708 -41725736 + GC_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr9 100545979 100546011 -41725433 + GC_rich Low_complexity Low_complexity 1 32 0 315 308 75 35 chr9 100546224 100546287 -41725157 - L1ME4a LINE L1 -114 6007 5948 1459 50 0 0 chr9 100546287 100546468 -41724976 - AluY SINE Alu -3 308 128 315 308 75 35 chr9 100546468 100546631 -41724813 - L1ME4a LINE L1 -173 5948 5772 569 252 29 0 chr9 100546676 100546815 -41724629 - L1ME4a LINE L1 -446 5675 5533 180 0 0 0 chr9 100546858 100546878 -41724566 + (TTG)n Simple_repeat Simple_repeat 2 21 0 318 224 0 0 chr9 100546886 100546944 -41724500 - L1ME LINE L1 -544 5626 5569 286 261 29 0 chr9 100546940 100547009 -41724435 - L1M3 LINE L1 -416 5755 5685 * 3034 137 54 57 chr9 100547037 100547117 -41724327 + LTR36 LTR ERV1 17 96 -515 2123 113 0 0 chr9 100547117 100547418 -41724026 - AluSq SINE Alu -12 301 1 3034 137 54 57 chr9 100547418 100547934 -41723510 + LTR36 LTR ERV1 96 611 0 360 165 13 51 chr9 100547935 100548014 -41723430 - L1M3 LINE L1 -471 5699 5624 * 373 275 100 33 chr9 100547993 100548233 -41723211 + L1M4 LINE L1 4066 4321 -1825 * 917 205 84 47 chr9 100548221 100548502 -41722942 + L1ME3A LINE L1 5835 6129 -41 2184 106 3 0 chr9 100548502 100548805 -41722639 - AluSx SINE Alu -8 304 1 917 205 84 47 chr9 100548805 100548820 -41722624 + L1ME3A LINE L1 6129 6142 -28 303 176 101 92 chr9 100548893 100549012 -41722432 + LTR24B LTR ERV1 450 569 -7 321 239 131 31 chr9 100549106 100549236 -41722208 + L1ME4a LINE L1 5681 5824 -297 837 181 8 0 chr9 100549237 100549370 -41722074 + AluJb SINE Alu 121 254 -58 446 217 148 48 chr9 100549456 100549686 -41721758 + L1ME4a LINE L1 5855 6107 -14 180 0 0 0 chr9 100549726 100549746 -41721698 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 213 220 30 91 chr9 100550326 100550458 -41720986 + L2 LINE L2 2927 3050 -263 2321 144 13 0 chr9 100550527 100550923 -41720521 + MER57A LTR ERV1 3 403 0 425 288 110 27 chr9 100550939 100551261 -41720183 + L2 LINE L2 2258 2979 -334 671 256 64 48 chr9 100551280 100551530 -41719914 - MIR SINE MIR -1 261 8 405 254 174 62 chr9 100551569 100551676 -41719768 + L2 LINE L2 3003 3097 -216 2360 92 0 0 chr9 100551676 100551985 -41719459 - AluSg SINE Alu 0 309 1 405 254 174 62 chr9 100551985 100552152 -41719292 + L2 LINE L2 3097 3309 -4 207 69 0 0 chr9 100552166 100552195 -41719249 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 206 103 0 26 chr9 100553202 100553241 -41718203 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 245 286 22 11 chr9 100553572 100553663 -41717781 + LTR67 LTR ERVL 85 176 -381 635 265 48 34 chr9 100553694 100553962 -41717482 + LTR67 LTR ERVL 281 552 -5 497 316 89 58 chr9 100554531 100554858 -41716586 + L2 LINE L2 2405 2757 -557 2038 150 17 0 chr9 100554858 100555152 -41716292 + AluSx SINE Alu 1 299 -13 497 316 89 58 chr9 100555152 100555362 -41716082 + L2 LINE L2 2757 2959 -355 2379 59 28 3 chr9 100556371 100556661 -41714783 + AluY SINE Alu 1 297 -14 1432 152 70 9 chr9 100556729 100556959 -41714485 - AluSx SINE Alu -14 298 55 2373 105 3 0 chr9 100557112 100557416 -41714028 + AluSp SINE Alu 1 305 -8 397 280 132 16 chr9 100557453 100557635 -41713809 + MIR SINE MIR 16 218 -44 525 334 186 50 chr9 100558125 100558688 -41712756 + L1MB4 LINE L1 4208 4847 -1299 28 29 0 0 chr9 100558755 100558790 -41712654 + AT_rich Low_complexity Low_complexity 1 35 0 373 311 48 38 chr9 100558878 100558906 -41712538 + L1MB4 LINE L1 5406 5432 -689 2118 115 17 0 chr9 100558906 100559216 -41712228 - AluSq SINE Alu 0 315 1 373 311 48 38 chr9 100559216 100559369 -41712075 + L1MB4 LINE L1 5432 5595 -526 2073 113 24 3 chr9 100559369 100559661 -41711783 - AluSq SINE Alu -15 298 1 373 311 48 38 chr9 100559661 100559770 -41711674 + L1MB4 LINE L1 5595 5701 -420 1143 166 0 0 chr9 100559798 100559979 -41711465 + AluYa5 SINE Alu 131 311 0 908 222 43 58 chr9 100560023 100560352 -41711092 + MER83C LTR ERV1 50 373 0 1913 186 7 5 chr9 100560395 100560808 -41710636 + L1MB4 LINE L1 5767 6180 0 2403 84 3 7 chr9 100560846 100561155 -41710289 + AluSg1 SINE Alu 1 308 -1 2441 87 0 3 chr9 100561498 100561798 -41709646 + AluSc SINE Alu 1 299 -10 282 143 0 0 chr9 100562465 100562514 -41708930 + (GA)n Simple_repeat Simple_repeat 2 50 0 1692 127 0 0 chr9 100563295 100563558 -41707886 + AluSx SINE Alu 58 320 0 225 319 48 19 chr9 100563727 100563937 -41707507 + L1MEd LINE L1 302 517 -5602 347 290 188 11 chr9 100564348 100564524 -41706920 - Charlie8 DNA MER1_type -2135 282 76 869 198 35 0 chr9 100564551 100564753 -41706691 + L1MD2 LINE L1 4412 4620 -1526 1291 162 0 5 chr9 100564755 100564959 -41706485 - AluJo SINE Alu 0 312 110 2951 200 52 40 chr9 100564960 100565615 -41705829 + L1MD2 LINE L1 5373 6040 -319 2043 122 14 17 chr9 100565615 100565909 -41705535 - AluSx SINE Alu -19 293 1 2951 200 52 40 chr9 100565909 100566018 -41705426 + L1MD2 LINE L1 6040 6146 -213 332 233 121 0 chr9 100566041 100566157 -41705287 + L1MD2 LINE L1 6222 6351 -8 1365 95 45 0 chr9 100566229 100566429 -41705015 - MER30 DNA MER1_type 0 230 22 1700 144 7 22 chr9 100566821 100567092 -41704352 - AluJo SINE Alu -12 300 34 241 311 10 19 chr9 100567163 100567266 -41704178 + GA-rich Low_complexity Low_complexity 2 103 0 675 160 120 0 chr9 100567577 100567727 -41703717 + MER69A DNA AcHobo 9 176 -1 354 257 83 28 chr9 100567991 100568100 -41703344 - MIR3 SINE MIR -41 167 53 260 295 0 0 chr9 100568259 100568320 -41703124 - L2 LINE L2 -3 3310 3250 181 233 23 0 chr9 100568543 100568586 -41702858 + L2 LINE L2 3133 3176 -96 1662 121 50 64 chr9 100568665 100568790 -41702654 + AluJb SINE Alu 1 126 -186 450 0 0 0 chr9 100568790 100568840 -41702604 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 1662 121 50 64 chr9 100568840 100569012 -41702432 + AluJb SINE Alu 126 294 -18 236 267 40 0 chr9 100569112 100569187 -41702257 + (TGGA)n Simple_repeat Simple_repeat 1 78 0 897 176 0 0 chr9 100569233 100569375 -41702069 + FLAM_A SINE Alu 1 142 0 258 233 0 17 chr9 100569375 100569435 -41702009 + AluYa5 SINE Alu 126 184 -117 7652 182 60 52 chr9 100569435 100569599 -41701845 + LTR23-int LTR ERV1 1698 1859 -3264 2302 97 7 0 chr9 100569599 100569899 -41701545 + AluSp SINE Alu 1 302 -11 7652 182 60 52 chr9 100569899 100570460 -41700984 + LTR23-int LTR ERV1 1859 2414 -2709 2350 100 3 0 chr9 100570460 100570761 -41700683 + AluSg SINE Alu 1 302 -8 7652 182 60 52 chr9 100570761 100570773 -41700671 + LTR23-int LTR ERV1 2414 2424 -2699 2375 110 3 0 chr9 100570773 100571082 -41700362 + AluSq SINE Alu 1 310 -3 7652 182 60 52 chr9 100571082 100571299 -41700145 + LTR23-int LTR ERV1 2424 2638 -2485 2223 135 0 0 chr9 100571299 100571596 -41699848 - AluJb SINE Alu -15 297 1 7652 182 60 52 chr9 100571596 100572279 -41699165 + LTR23-int LTR ERV1 2638 3314 -1809 2369 56 42 3 chr9 100572279 100572563 -41698881 - AluY SINE Alu -16 295 1 7652 182 60 52 chr9 100572563 100573012 -41698432 + LTR23-int LTR ERV1 3314 3810 -1313 2302 102 0 37 chr9 100573012 100573198 -41698246 - AluSx SINE Alu 0 312 142 2120 124 3 3 chr9 100573198 100573488 -41697956 - AluSg SINE Alu -19 291 2 2302 102 0 37 chr9 100573488 100573625 -41697819 - AluSx SINE Alu -170 142 1 7652 182 60 52 chr9 100573625 100573794 -41697650 + LTR23-int LTR ERV1 3810 3976 -1147 926 122 0 36 chr9 100573825 100573964 -41697480 + AluJo SINE Alu 1 134 -178 2437 124 120 78 chr9 100573975 100573988 -41697456 + LTR23-int LTR ERV1 5144 5155 -1176 1847 141 4 11 chr9 100573988 100574264 -41697180 + AluSx SINE Alu 30 303 -9 2437 124 120 78 chr9 100574264 100574496 -41696948 + LTR23-int LTR ERV1 5155 5376 -955 2182 120 0 29 chr9 100574496 100574805 -41696639 + AluJb SINE Alu 1 300 -12 2437 124 120 78 chr9 100574805 100575083 -41696361 + LTR23-int LTR ERV1 5376 5690 -641 1992 133 14 4 chr9 100575218 100575536 -41695908 - AluSx SINE Alu 0 321 1 877 191 24 14 chr9 100575536 100575746 -41695698 + LTR23 LTR ERV1 226 437 0 1156 172 42 132 chr9 100577545 100577745 -41693699 - MER65A LTR ERV1 -2 443 301 2690 45 0 0 chr9 100577745 100578056 -41693388 - AluY SINE Alu 0 311 1 1156 172 42 132 chr9 100578056 100578286 -41693158 - MER65A LTR ERV1 -144 301 52 1025 117 7 0 chr9 100578288 100578425 -41693019 - FRAM SINE Alu -23 153 16 252 163 0 0 chr9 100578437 100578480 -41692964 - MER65B LTR ERV1 -488 43 1 229 319 12 71 chr9 100578619 100578788 -41692656 + L2 LINE L2 2940 3098 -174 21 0 0 0 chr9 100579427 100579448 -41691996 + AT_rich Low_complexity Low_complexity 1 21 0 212 333 50 17 chr9 100579580 100579700 -41691744 + MIR SINE MIR 41 164 -98 464 278 53 24 chr9 100580173 100580342 -41691102 - MER5B DNA MER1_type -2 176 3 268 338 50 14 chr9 100580546 100580685 -41690759 - L3 LINE CR1 -15 1562 1419 294 219 57 49 chr9 100581000 100581123 -41690321 - MIR3 SINE MIR -41 167 44 292 248 231 25 chr9 100581158 100581279 -41690165 + MIR3 SINE MIR 15 160 -48 2083 126 3 46 chr9 100581426 100581604 -41689840 - AluSx SINE Alu -1 311 127 2322 99 3 0 chr9 100581604 100581896 -41689548 - AluSx SINE Alu -19 293 1 2083 126 3 46 chr9 100581896 100581948 -41689496 - AluSx SINE Alu -185 127 74 2333 98 7 7 chr9 100581948 100582253 -41689191 - AluSq SINE Alu -6 307 3 2083 126 3 46 chr9 100582253 100582346 -41689098 - AluSx SINE Alu -238 74 1 409 270 16 16 chr9 100583130 100583256 -41688188 + MIR SINE MIR 66 191 -71 399 364 11 5 chr9 100583272 100583456 -41687988 - MIR SINE MIR -66 196 12 262 323 21 0 chr9 100583459 100583552 -41687892 + MIR SINE MIR 157 251 -11 265 165 25 51 chr9 100583561 100583640 -41687804 - MIR3 SINE MIR -1 207 131 2442 107 0 0 chr9 100583651 100583959 -41687485 - AluSx SINE Alu -4 308 1 2375 107 0 0 chr9 100583976 100584275 -41687169 - AluSg SINE Alu -11 299 1 246 249 162 21 chr9 100585092 100585241 -41686203 - MIR SINE MIR -60 202 34 2363 101 0 19 chr9 100585471 100585787 -41685657 + AluSx SINE Alu 1 310 -2 386 216 21 0 chr9 100586306 100586403 -41685041 - MIR SINE MIR -76 132 34 1742 123 46 8 chr9 100586879 100587139 -41684305 - AluJo SINE Alu -17 295 26 452 239 35 28 chr9 100587211 100587353 -41684091 - L1M4 LINE L1 -3800 2346 2204 209 308 101 6 chr9 100587388 100587547 -41683897 + L2 LINE L2 2885 3058 -214 375 174 5 0 chr9 100587654 100587726 -41683718 - AluJ/FLAM SINE Alu -239 63 5 183 80 0 0 chr9 100587834 100587859 -41683585 + (GGA)n Simple_repeat Simple_repeat 2 26 0 1946 135 22 32 chr9 100588017 100588328 -41683116 - AluJo SINE Alu -4 308 1 323 177 54 146 chr9 100588468 100588620 -41682824 + MER20B DNA MER1_type 31 176 -81 1801 167 35 3 chr9 100589272 100589560 -41681884 - AluJo SINE Alu -15 297 1 22 0 0 0 chr9 100589612 100589634 -41681810 + AT_rich Low_complexity Low_complexity 1 22 0 200 200 0 0 chr9 100590035 100590075 -41681369 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 269 215 25 51 chr9 100590588 100590667 -41680777 - MIR SINE MIR -63 145 69 332 172 237 11 chr9 100590719 100590812 -41680632 + MIR SINE MIR 36 149 -59 443 276 45 0 chr9 100591488 100591622 -41679822 + MER91C DNA MER1_type 1 140 0 1700 160 52 10 chr9 100591705 100591993 -41679451 - AluJb SINE Alu -12 300 1 394 267 30 48 chr9 100592039 100592204 -41679240 - MIR3 SINE MIR -6 202 41 1428 211 122 17 chr9 100592319 100592737 -41678707 + MLT1C LTR MaLR 5 466 -1 338 259 59 30 chr9 100593491 100593626 -41677818 + L3 LINE CR1 1376 1514 -63 570 288 122 5 chr9 100594529 100594751 -41676693 + MIR SINE MIR 6 253 -9 893 158 0 0 chr9 100594795 100594928 -41676516 - FLAM_C SINE Alu -9 134 2 211 273 0 30 chr9 100595255 100595321 -41676123 - MIR SINE MIR -91 171 108 551 297 87 0 chr9 100595740 100595925 -41675519 + MIR SINE MIR 48 248 -14 1954 165 34 31 chr9 100595935 100596099 -41675345 + L1MB7 LINE L1 5525 5687 -497 2190 92 15 0 chr9 100596099 100596372 -41675072 + AluSq SINE Alu 26 302 -11 1954 165 34 31 chr9 100596372 100596620 -41674824 + L1MB7 LINE L1 5687 5938 -246 335 80 0 20 chr9 100596620 100596670 -41674774 + ERVL LTR ERVL 2510 2558 -3206 2516 69 3 3 chr9 100596708 100597014 -41674430 + AluSc SINE Alu 1 306 -3 896 173 14 73 chr9 100597016 100597236 -41674208 + L1MB7 LINE L1 5935 6141 -43 1447 135 0 10 chr9 100597243 100597287 -41674157 + AluJb SINE Alu 93 136 -176 2176 117 3 0 chr9 100597287 100597591 -41673853 + AluSx SINE Alu 1 305 0 1447 135 0 10 chr9 100597591 100597752 -41673692 + AluJb SINE Alu 136 297 -15 228 88 0 0 chr9 100597755 100597789 -41673655 + L1MB7 LINE L1 6132 6165 -19 223 357 71 0 chr9 100598166 100598278 -41673166 - L2 LINE L2 0 3272 3153 1767 171 10 20 chr9 100598381 100598685 -41672759 - AluJo SINE Alu -11 301 1 540 239 122 5 chr9 100598832 100599037 -41672407 + L1MC4 LINE L1 7689 7917 -125 2242 112 0 7 chr9 100599291 100599595 -41671849 - AluSx SINE Alu -10 302 1 404 252 47 16 chr9 100599702 100599829 -41671615 + MIR SINE MIR 117 247 -15 254 237 8 76 chr9 100599844 100599975 -41671469 + L1ME4a LINE L1 5935 6056 -65 244 211 94 31 chr9 100600192 100600288 -41671156 - MIR SINE MIR -86 122 35 399 68 0 0 chr9 100600772 100600831 -41670613 + (CCCTG)n Simple_repeat Simple_repeat 1 59 0 510 252 205 19 chr9 100601393 100601603 -41669841 + MIR SINE MIR 1 249 -13 1846 145 67 0 chr9 100601867 100602149 -41669295 + AluJb SINE Alu 1 301 -11 364 287 46 11 chr9 100602162 100602336 -41669108 - MIR SINE MIR -6 256 77 472 309 25 74 chr9 100603115 100603400 -41668044 - L3 LINE CR1 -110 1467 1197 2122 132 7 0 chr9 100603651 100603946 -41667498 - AluSx SINE Alu -9 303 7 191 244 0 0 chr9 100604718 100604759 -41666685 + MIR SINE MIR 106 146 -62 976 130 0 20 chr9 100604926 100605072 -41666372 + FLAM_C SINE Alu 1 143 0 596 265 111 60 chr9 100605073 100605443 -41666001 + L1MC5 LINE L1 7527 7915 -46 490 152 86 0 chr9 100605541 100605646 -41665798 - MER53 DNA DNA -7 182 69 2598 166 45 110 chr9 100605647 100605909 -41665535 + L1MD1 LINE L1 5572 5850 -392 849 136 0 15 chr9 100605909 100606041 -41665403 + FLAM_C SINE Alu 4 133 0 2598 166 45 110 chr9 100606041 100606054 -41665390 + L1MD1 LINE L1 5850 5862 -380 2256 138 0 0 chr9 100606054 100606365 -41665079 + AluSx SINE Alu 1 311 -1 2598 166 45 110 chr9 100606365 100606407 -41665037 + L1MD1 LINE L1 5862 5905 -337 1670 167 26 45 chr9 100606407 100606760 -41664684 + AluJo SINE Alu 1 312 0 2598 166 45 110 chr9 100606760 100607157 -41664287 + L1MD1 LINE L1 5905 6241 -1 395 109 0 0 chr9 100607168 100607232 -41664212 + MER53 DNA DNA 122 185 -4 365 185 0 0 chr9 100607235 100607300 -41664144 + MER5A DNA MER1_type 48 112 -77 1389 188 146 13 chr9 100607344 100607722 -41663722 - MSTA LTR MaLR 0 428 1 2206 113 6 16 chr9 100607861 100608172 -41663272 - AluSg SINE Alu -2 308 1 381 283 126 47 chr9 100608186 100608560 -41662884 + L2 LINE L2 2738 3138 -175 514 263 116 9 chr9 100609262 100609582 -41661862 - L1MEd LINE L1 -1617 4512 4159 1066 125 85 17 chr9 100609596 100609756 -41661688 - AluSg/x SINE Alu -4 306 132 2509 80 0 0 chr9 100609756 100610058 -41661386 - AluSx SINE Alu -10 302 1 1066 125 85 17 chr9 100610058 100610073 -41661371 - AluSg/x SINE Alu -178 132 119 328 298 77 0 chr9 100610083 100610187 -41661257 - L1M4 LINE L1 -2629 3517 3406 1961 147 20 0 chr9 100610226 100610525 -41660919 - AluJo SINE Alu -7 305 1 716 223 128 33 chr9 100610572 100611036 -41660408 + L1MC4 LINE L1 7278 7713 -95 2288 114 0 3 chr9 100611036 100611342 -41660102 - AluSx SINE Alu -7 305 1 1172 197 4 21 chr9 100611348 100611581 -41659863 - AluJo SINE Alu -11 301 73 471 18 0 0 chr9 100611591 100611647 -41659797 + (CA)n Simple_repeat Simple_repeat 2 57 0 317 226 39 20 chr9 100611654 100611756 -41659688 + L1MC4 LINE L1 7939 8042 0 1187 251 85 11 chr9 100611814 100612261 -41659183 - L1MEd LINE L1 -2160 3969 3490 345 203 47 0 chr9 100612267 100612331 -41659113 - L1MC4 LINE L1 -1340 6702 6636 282 313 31 57 chr9 100612334 100612526 -41658918 - L1ME3A LINE L1 -15 6155 5969 1032 277 134 19 chr9 100612583 100613167 -41658277 - L1ME3A LINE L1 -202 5968 5318 2451 93 0 0 chr9 100613284 100613586 -41657858 - AluSg SINE Alu -8 302 1 1526 263 66 13 chr9 100613618 100613991 -41657453 - L1MEd LINE L1 -2664 3465 3113 1898 145 41 3 chr9 100613991 100614281 -41657163 - AluJb SINE Alu -11 301 1 1526 263 66 13 chr9 100614281 100614589 -41656855 - L1MEd LINE L1 -3016 3113 2748 690 265 91 0 chr9 100614597 100614816 -41656628 - L1MEd LINE L1 -5320 799 561 310 279 0 0 chr9 100614879 100614958 -41656486 - MER116 DNA Mariner 0 80 2 21 0 0 0 chr9 100615114 100615135 -41656309 + AT_rich Low_complexity Low_complexity 1 21 0 493 228 0 49 chr9 100615235 100615358 -41656086 - MIR SINE MIR -67 141 25 606 183 71 0 chr9 100615980 100616106 -41655338 + MIR SINE MIR 32 166 -96 816 168 0 0 chr9 100616106 100616237 -41655207 + FLAM_C SINE Alu 2 132 -1 255 273 65 0 chr9 100616252 100616329 -41655115 + MIR SINE MIR 151 232 -30 481 328 82 47 chr9 100616407 100616724 -41654720 - L2 LINE L2 -4 3268 2941 216 0 0 0 chr9 100616778 100616802 -41654642 + (CA)n Simple_repeat Simple_repeat 2 25 0 1674 173 42 0 chr9 100617000 100617289 -41654155 - AluJo SINE Alu -11 301 1 367 312 82 34 chr9 100618776 100619068 -41652376 + MLT1I LTR MaLR 104 409 0 2280 97 0 0 chr9 100619213 100619503 -41651941 + AluSx SINE Alu 1 290 -22 283 317 233 0 chr9 100619949 100620129 -41651315 - MIR SINE MIR 0 262 41 180 313 0 0 chr9 100620252 100620300 -41651144 - MIR SINE MIR -106 156 109 214 261 0 0 chr9 100620699 100620745 -41650699 + (CATG)n Simple_repeat Simple_repeat 1 46 0 2269 112 0 7 chr9 100621126 100621431 -41650013 - AluSx SINE Alu -9 303 1 261 258 54 21 chr9 100621461 100621554 -41649890 - MIR SINE MIR -81 181 86 258 32 0 0 chr9 100621653 100621684 -41649760 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 387 41 0 0 chr9 100621683 100621732 -41649712 + (GA)n Simple_repeat Simple_repeat 1 49 0 402 235 8 59 chr9 100622757 100622876 -41648568 + MER81 DNA DNA 1 113 -1 1672 183 35 0 chr9 100622915 100623200 -41648244 - AluJb SINE Alu -17 295 1 253 216 27 54 chr9 100623595 100623669 -41647775 + MER5B DNA MER1_type 80 151 -27 626 194 158 12 chr9 100623716 100623881 -41647563 + MER5A DNA MER1_type 1 189 0 374 244 150 66 chr9 100623925 100624138 -41647306 + L1MC5 LINE L1 7226 7456 -505 3539 177 19 28 chr9 100624145 100624495 -41646949 + L1MB3 LINE L1 4981 5333 -850 3539 154 8 26 chr9 100624495 100624799 -41646645 + L1MB3 LINE L1 5530 5838 -345 1741 167 14 11 chr9 100624799 100625075 -41646369 + AluJo SINE Alu 36 312 0 3539 154 8 26 chr9 100625075 100625432 -41646012 + L1MB3 LINE L1 5838 6179 -4 3539 177 19 28 chr9 100625432 100625454 -41645990 + L1MB3 LINE L1 5333 6179 -4 831 277 59 59 chr9 100625469 100625909 -41645535 + L1MC5 LINE L1 7471 7910 -51 180 286 63 0 chr9 100625939 100626002 -41645442 + MIR SINE MIR 2 68 -194 555 217 36 109 chr9 100626007 100626228 -41645216 - MER3 DNA MER1_type -2 207 3 221 239 141 0 chr9 100626230 100626301 -41645143 + MIR SINE MIR 65 145 -117 643 257 170 0 chr9 100626315 100626521 -41644923 - MIR SINE MIR -1 261 21 227 348 34 0 chr9 100626528 100626617 -41644827 + MIR SINE MIR 169 260 -2 254 286 48 0 chr9 100628004 100628088 -41643356 + MIR SINE MIR 156 243 -19 2309 111 3 7 chr9 100628377 100628684 -41642760 - AluSx SINE Alu -6 306 1 232 282 24 24 chr9 100628687 100628772 -41642672 + MIR SINE MIR 58 142 -66 265 342 0 18 chr9 100629122 100629233 -41642211 - MIR3 SINE MIR -54 154 46 312 336 77 35 chr9 100629336 100629622 -41641822 - L2 LINE L2 -9 3263 2966 422 272 0 48 chr9 100630223 100630525 -41640919 + (CCCCAA)n Simple_repeat Simple_repeat 1 287 0 659 132 28 0 chr9 100630973 100631104 -41640340 + FLAM_C SINE Alu 9 142 0 565 189 39 8 chr9 100631107 100631234 -41640210 - MER5A DNA MER1_type -58 131 1 189 329 73 51 chr9 100631255 100631392 -41640052 - MIR SINE MIR -56 206 67 2230 73 32 60 chr9 100631778 100632093 -41639351 + AluSp SINE Alu 3 308 -5 490 206 151 20 chr9 100632167 100632313 -41639131 + MIR SINE MIR 91 255 -7 543 160 76 8 chr9 100632424 100632451 -41638993 + L1MB3 LINE L1 6044 6068 -115 1976 118 52 22 chr9 100632451 100632815 -41638629 + THE1C LTR MaLR 1 375 0 543 160 76 8 chr9 100632815 100632918 -41638526 + L1MB3 LINE L1 6068 6183 0 190 323 79 31 chr9 100633387 100633514 -41637930 + MIR3 SINE MIR 13 145 -63 691 248 151 5 chr9 100633626 100633844 -41637600 + MIR SINE MIR 8 257 -5 336 231 13 0 chr9 100633867 100633945 -41637499 - MIR SINE MIR 0 262 184 196 288 119 8 chr9 100634390 100634508 -41636936 - L3 LINE CR1 -199 1378 1248 1797 113 0 23 chr9 100635395 100635652 -41635792 - AluSx SINE Alu -3 309 59 712 257 64 118 chr9 100635742 100635963 -41635481 - Charlie7 DNA MER1_type -1927 685 454 1948 125 0 43 chr9 100635963 100636268 -41635176 - AluJo SINE Alu 0 312 21 712 257 64 118 chr9 100636268 100636730 -41634714 - Charlie7 DNA MER1_type -2158 454 39 489 277 32 13 chr9 100636765 100636920 -41634524 - MIR3 SINE MIR -7 201 44 231 188 78 16 chr9 100637029 100637093 -41634351 + MIR SINE MIR 111 178 -84 190 278 56 0 chr9 100637471 100637525 -41633919 + L2 LINE L2 2726 2782 -532 477 224 79 55 chr9 100637588 100637664 -41633780 + MER97c DNA MER1_type? 14 87 -1003 2320 98 0 10 chr9 100637664 100637983 -41633461 + AluSg SINE Alu 1 310 0 477 224 79 55 chr9 100637983 100638071 -41633373 + MER97c DNA MER1_type? 87 182 -908 215 288 104 48 chr9 100638190 100638315 -41633129 + L2 LINE L2 2918 3049 -223 283 254 14 0 chr9 100638429 100638500 -41632944 + MIR SINE MIR 69 140 -122 215 269 90 45 chr9 100638648 100638804 -41632640 - L3 LINE CR1 -860 717 555 830 152 0 0 chr9 100639284 100639416 -41632028 - FLAM_C SINE Alu 0 133 2 267 312 53 24 chr9 100639575 100639745 -41631699 + L2 LINE L2 2890 3064 -208 275 254 14 0 chr9 100639827 100639898 -41631546 + MIR SINE MIR 69 140 -122 189 321 36 0 chr9 100640057 100640141 -41631303 + L2 LINE L2 3136 3222 -50 565 290 34 11 chr9 100640550 100640726 -41630718 + MIR SINE MIR 34 213 -49 399 190 116 9 chr9 100640738 100640890 -41630554 + MER104 DNA Tc2 1 180 0 190 348 135 0 chr9 100641109 100641250 -41630194 - L3 LINE CR1 -525 1052 893 1138 209 60 36 chr9 100641487 100641619 -41629825 - MER2 DNA MER2_type -1 343 216 2128 139 0 3 chr9 100641619 100641907 -41629537 + AluSx SINE Alu 1 287 -25 1138 209 60 36 chr9 100641907 100642109 -41629335 - MER2 DNA MER2_type -128 216 1 483 126 225 27 chr9 100642170 100642281 -41629163 - FLAM_C SINE Alu 0 133 1 393 186 31 124 chr9 100642849 100643010 -41628434 - MIR SINE MIR -30 232 87 331 245 7 91 chr9 100643018 100643161 -41628283 + L2 LINE L2 2969 3099 -173 351 180 101 22 chr9 100643291 100643380 -41628064 - MIR SINE MIR -78 184 89 240 282 26 26 chr9 100644123 100644201 -41627243 + MIR SINE MIR 67 144 -64 359 275 7 0 chr9 100644319 100644428 -41627016 + MIR SINE MIR 45 154 -63 2527 70 0 13 chr9 100644939 100645251 -41626193 + AluY SINE Alu 1 308 -3 1169 150 0 0 chr9 100645251 100645418 -41626026 + AluSg/x SINE Alu 132 298 -12 1876 157 19 6 chr9 100645420 100645739 -41625705 - MLT1A1 LTR MaLR -42 323 1 227 319 0 0 chr9 100645862 100645934 -41625510 + MIR SINE MIR 97 168 -94 858 254 46 69 chr9 100645991 100646424 -41625020 + L2 LINE L2 2853 3275 -38 2174 124 3 19 chr9 100646424 100646739 -41624705 + AluSx SINE Alu 1 310 -2 197 250 0 0 chr9 100646774 100646818 -41624626 + L2 LINE L2 3268 3311 -2 * 293 309 0 0 chr9 100646812 100646893 -41624551 + MIR SINE MIR 182 262 0 426 163 0 12 chr9 100647053 100647133 -41624311 - MER116 DNA Mariner 0 80 2 524 306 29 6 chr9 100647517 100647687 -41623757 - MIR3 SINE MIR -19 189 16 2445 96 0 0 chr9 100647825 100648126 -41623318 - AluSx SINE Alu -11 301 1 230 255 78 59 chr9 100648172 100648274 -41623170 - L1ME LINE L1 -455 5666 5563 578 229 87 38 chr9 100648402 100648585 -41622859 + MIR3 SINE MIR 15 206 -2 280 270 101 11 chr9 100648935 100649024 -41622420 - L3 LINE CR1 -107 1470 1374 212 291 169 0 chr9 100649342 100649514 -41621930 + L3 LINE CR1 1170 1370 -207 231 264 141 13 chr9 100650256 100650394 -41621050 - MIR SINE MIR -74 134 30 30 69 0 0 chr9 100650591 100650649 -41620795 + GC_rich Low_complexity Low_complexity 1 58 0 308 327 10 0 chr9 100650871 100650975 -41620469 + MIR SINE MIR 77 181 -81 594 247 104 6 chr9 100651243 100651425 -41620019 - MIR SINE MIR -28 234 35 263 231 0 77 chr9 100651482 100651573 -41619871 + L2 LINE L2 3228 3311 -2 313 218 57 81 chr9 100651580 100651704 -41619740 - MIR SINE MIR -41 221 101 2013 128 0 0 chr9 100651947 100652254 -41619190 + AluSx SINE Alu 1 307 0 1793 168 10 0 chr9 100652370 100652667 -41618777 - AluJb SINE Alu -12 300 1 203 333 71 0 chr9 100653099 100653198 -41618246 - MIR SINE MIR -121 141 36 222 324 67 13 chr9 100654162 100654309 -41617135 + MIR SINE MIR 11 162 -46 193 225 162 117 chr9 100654419 100654491 -41616953 - MER5B DNA MER1_type -59 119 39 2219 104 0 3 chr9 100654491 100654798 -41616646 - AluSq SINE Alu -7 306 1 193 225 162 117 chr9 100654798 100654836 -41616608 - MER5B DNA MER1_type -139 39 4 286 228 6 42 chr9 100654968 100655135 -41616309 + GA-rich Low_complexity Low_complexity 1 161 0 2304 84 0 0 chr9 100655352 100655648 -41615796 + AluSc SINE Alu 1 296 -13 313 242 50 30 chr9 100657172 100657271 -41614173 - MIR SINE MIR -76 132 32 416 230 20 122 chr9 100657704 100657918 -41613526 - L2 LINE L2 -170 3102 2912 2178 126 0 0 chr9 100658675 100658984 -41612460 + AluSx SINE Alu 1 309 -3 234 259 74 46 chr9 100659002 100659110 -41612334 - MIR SINE MIR -68 140 30 204 357 60 0 chr9 100659305 100659389 -41612055 - MIR SINE MIR -85 177 89 223 266 32 11 chr9 100660237 100660331 -41611113 + L2 LINE L2 1999 2094 -1220 656 245 60 25 chr9 100660502 100660702 -41610742 + L1MC5 LINE L1 7721 7927 -34 375 214 161 86 chr9 100660766 100661009 -41610435 + MLT1J LTR MaLR 106 366 -145 646 250 205 0 chr9 100661568 100661768 -41609676 + MIR SINE MIR 18 258 -4 390 339 57 5 chr9 100661766 100661958 -41609486 + MIR SINE MIR 58 259 -3 * 396 319 28 7 chr9 100662192 100662333 -41609111 - MER103 DNA DNA -1 165 22 245 395 0 0 chr9 100662772 100662853 -41608591 - MER117 DNA MER1_type 0 197 117 551 256 0 8 chr9 100662856 100662981 -41608463 - MER117 DNA MER1_type -35 162 39 523 279 6 43 chr9 100662983 100663144 -41608300 - MIR3 SINE MIR -49 159 5 1382 145 50 98 chr9 100663485 100663803 -41607641 - AluJb SINE Alu -9 303 1 1658 103 123 4 chr9 100663936 100664197 -41607247 - AluSg1 SINE Alu -17 292 1 193 309 149 0 chr9 100664657 100664751 -41606693 + MIR SINE MIR 83 190 -72 197 276 17 0 chr9 100666084 100666142 -41605302 + MIR SINE MIR 20 78 -130 2285 122 28 9 chr9 100666232 100666559 -41604885 - MER1B DNA MER1_type 0 337 5 286 364 20 40 chr9 100667173 100667371 -41604073 + MIR SINE MIR 59 252 -10 624 69 10 20 chr9 100667660 100667761 -41603683 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 1642 175 24 0 chr9 100667770 100668067 -41603377 - AluJb SINE Alu -8 304 1 205 315 109 0 chr9 100668077 100668169 -41603275 - MIR SINE MIR -66 142 41 793 267 43 0 chr9 100669015 100669243 -41602201 + MIR SINE MIR 6 241 -21 182 214 98 18 chr9 100669284 100669396 -41602048 + L2 LINE L2 2857 2977 -336 213 344 104 0 chr9 100669432 100669528 -41601916 + MIR SINE MIR 75 180 -82 2027 127 10 0 chr9 100669738 100670038 -41601406 - AluSx SINE Alu -9 303 1 508 316 68 42 chr9 100670047 100670446 -41600998 + L2 LINE L2 2609 3116 -156 2319 70 0 10 chr9 100670446 100670745 -41600699 - AluY SINE Alu -15 296 1 508 316 68 42 chr9 100670745 100670825 -41600619 + L2 LINE L2 3116 3192 -80 599 319 46 0 chr9 100671358 100671574 -41599870 + MIR SINE MIR 35 260 -2 368 282 53 85 chr9 100671584 100671817 -41599627 - L1ME2 LINE L1 -187 5934 5690 205 269 90 0 chr9 100671847 100671925 -41599519 + L3 LINE CR1 1424 1508 -69 565 247 38 6 chr9 100673300 100673458 -41597986 - MIR SINE MIR -60 202 40 1795 149 35 0 chr9 100673459 100673747 -41597697 - AluJo SINE Alu -14 298 1 761 263 110 0 chr9 100673974 100674183 -41597261 + MIR SINE MIR 9 240 -22 303 201 149 71 chr9 100674333 100674487 -41596957 - MIR SINE MIR -50 212 47 1612 169 36 7 chr9 100674636 100674937 -41596507 - AluJo SINE Alu -2 310 1 354 345 62 6 chr9 100675298 100675475 -41595969 + MIR3 SINE MIR 22 208 0 1544 191 6 16 chr9 100675643 100675957 -41595487 - AluJo SINE Alu -1 311 1 795 170 0 7 chr9 100675957 100676092 -41595352 - AluJo SINE Alu -177 135 2 2452 62 0 3 chr9 100676226 100676535 -41594909 + AluY SINE Alu 1 308 -3 903 181 0 0 chr9 100676634 100676789 -41594655 - AluSg/x SINE Alu -14 298 144 375 266 26 9 chr9 100677160 100677273 -41594171 - MIR SINE MIR -146 116 2 1379 186 24 0 chr9 100677397 100677649 -41593795 - Tigger3(Golem) DNA MER2_type 0 3029 2772 548 224 28 0 chr9 100677646 100677753 -41593691 - Tigger3(Golem) DNA MER2_type -2887 142 33 * 246 236 14 14 chr9 100677984 100678056 -41593388 + GA-rich Low_complexity Low_complexity 1 72 0 563 267 37 31 chr9 100678074 100678311 -41593133 + MIR SINE MIR 9 249 -13 588 261 137 92 chr9 100679333 100679677 -41591767 + MLT1J LTR MaLR 50 406 -44 1741 172 3 3 chr9 100679677 100679968 -41591476 - AluJb SINE Alu -19 293 3 588 261 137 92 chr9 100679968 100680016 -41591428 + MLT1J LTR MaLR 406 450 0 516 235 107 64 chr9 100680119 100680306 -41591138 - MER117 DNA MER1_type 0 197 3 2360 41 14 3 chr9 100681859 100682150 -41589294 + AluY SINE Alu 1 294 -17 1110 172 5 5 chr9 100682271 100682722 -41588722 + (TGGA)n Simple_repeat Simple_repeat 1 451 0 342 309 99 36 chr9 100683520 100684033 -41587411 + L2 LINE L2 2579 3121 -151 431 282 159 18 chr9 100684062 100684289 -41587155 + MIR SINE MIR 2 260 -2 233 302 52 10 chr9 100684319 100684415 -41587029 + L2 LINE L2 3156 3255 -17 277 42 21 42 chr9 100684433 100684481 -41586963 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 2224 113 3 0 chr9 100685112 100685422 -41586022 - AluSx SINE Alu -1 311 1 393 22 0 0 chr9 100686851 100686897 -41584547 + (CA)n Simple_repeat Simple_repeat 1 46 0 464 280 56 0 chr9 100686926 100687069 -41584375 + MER103 DNA DNA 8 158 -8 200 57 0 29 chr9 100687701 100687736 -41583708 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 785 153 15 15 chr9 100687739 100687870 -41583574 - FLAM_C SINE Alu 0 133 3 195 42 0 0 chr9 100688263 100688287 -41583157 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 216 295 137 0 chr9 100688556 100688651 -41582793 - MIR SINE MIR -67 141 34 1234 160 5 19 chr9 100690094 100690306 -41581138 + AluJb SINE Alu 85 293 -19 594 198 33 34 chr9 100690558 100690782 -41580662 - MER106B DNA MER1_type -2 1057 8 2018 84 4 11 chr9 100690894 100691168 -41580276 - AluSp SINE Alu -1 312 41 2118 109 3 3 chr9 100692276 100692578 -41578866 + AluSp SINE Alu 1 302 -11 2109 85 3 10 chr9 100692902 100693196 -41578248 + AluY SINE Alu 1 292 -19 509 284 126 5 chr9 100694176 100694366 -41577078 + MIR SINE MIR 5 217 -45 349 141 99 0 chr9 100695616 100695687 -41575757 - L1MB8 LINE L1 0 6178 6101 623 163 142 0 chr9 100695695 100695836 -41575608 + MIR SINE MIR 101 261 -1 275 271 57 0 chr9 100695853 100695923 -41575521 + L3 LINE CR1 1051 1124 -453 2193 122 0 0 chr9 100695948 100696251 -41575193 + AluSx SINE Alu 1 303 -9 572 248 28 0 chr9 100696619 100696764 -41574680 - L1ME3A LINE L1 -27 6143 5995 304 278 89 0 chr9 100696870 100696960 -41574484 - MER5A DNA MER1_type -88 101 4 181 302 9 85 chr9 100697887 100697993 -41573451 - L2 LINE L2 0 3272 3175 324 283 50 0 chr9 100698425 100698524 -41572920 + MER91A DNA MER1_type 1 104 -92 410 273 17 81 chr9 100699663 100699835 -41571609 - L3 LINE CR1 -2 1575 1415 263 389 7 34 chr9 100699838 100699987 -41571457 - L3 LINE CR1 -24 1553 1409 319 354 61 58 chr9 100700003 100700379 -41571065 - L2 LINE L2 -54 3218 2842 3203 174 16 7 chr9 100700596 100701149 -41570295 - MER68 LTR ERV1 -4 558 1 565 235 70 98 chr9 100701149 100701359 -41570085 + Charlie7 DNA MER1_type 265 466 -2146 1878 176 0 3 chr9 100701359 100701672 -41569772 + AluJo SINE Alu 1 312 0 565 235 70 98 chr9 100701672 100701746 -41569698 + Charlie7 DNA MER1_type 466 541 -2071 267 267 126 30 chr9 100702026 100702161 -41569283 + MIR3 SINE MIR 4 151 -57 197 174 0 22 chr9 100702270 100702316 -41569128 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 204 125 0 0 chr9 100702539 100702571 -41568873 + (A)n Simple_repeat Simple_repeat 1 32 0 572 342 86 25 chr9 100704093 100704526 -41566918 - L2 LINE L2 -5 3267 2809 352 299 71 16 chr9 100705894 100706021 -41565423 + MIR3 SINE MIR 13 146 -62 373 291 67 12 chr9 100706369 100706534 -41564910 + MER5B DNA MER1_type 1 174 -4 381 280 83 0 chr9 100706568 100706700 -41564744 + MER5A DNA MER1_type 47 189 0 239 287 0 0 chr9 100707164 100707251 -41564193 + T-rich Low_complexity Low_complexity 1 87 0 399 96 82 14 chr9 100707518 100707591 -41563853 + L1MB4 LINE L1 6102 6179 -1 1132 131 37 23 chr9 100707952 100708166 -41563278 - L1MB3 LINE L1 -93 6090 5874 21 0 0 0 chr9 100708202 100708223 -41563221 + AT_rich Low_complexity Low_complexity 1 21 0 525 281 0 7 chr9 100708968 100709103 -41562341 - MER58A DNA MER1_type 0 224 91 333 222 198 0 chr9 100709183 100709264 -41562180 - MER58A DNA MER1_type -10 97 1 445 267 110 0 chr9 100709340 100709486 -41561958 - MIR SINE MIR -89 173 12 506 224 30 118 chr9 100709691 100709928 -41561516 + L2 LINE L2 3098 3313 0 664 315 55 21 chr9 100710186 100710421 -41561023 - MIR SINE MIR 0 262 20 367 258 21 10 chr9 100710485 100710582 -41560862 - MIR SINE MIR -118 144 47 1999 127 10 13 chr9 100710620 100710919 -41560525 + AluSx SINE Alu 1 298 -14 229 321 36 22 chr9 100711045 100711182 -41560262 - L2 LINE L2 -230 3042 2904 219 382 92 8 chr9 100711810 100711941 -41559503 - L2 LINE L2 -4 3268 3127 653 329 88 4 chr9 100711970 100712198 -41559246 + MIR SINE MIR 13 259 -3 405 311 44 7 chr9 100712281 100712416 -41559028 - L2 LINE L2 -215 3057 2918 715 230 0 0 chr9 100714170 100714305 -41557139 - MIR SINE MIR -60 202 68 1899 139 0 7 chr9 100716065 100716376 -41555068 - AluSx SINE Alu 0 309 1 1133 200 18 23 chr9 100716401 100716621 -41554823 - MIR SINE MIR -21 241 23 334 314 62 53 chr9 100716872 100717098 -41554346 - L2 LINE L2 -29 3243 3016 914 309 42 16 chr9 100717159 100717606 -41553838 + L1ME3A LINE L1 5493 5951 -219 1711 171 20 0 chr9 100717850 100718155 -41553289 - AluJb SINE Alu 0 312 2 27 0 0 0 chr9 100718160 100718187 -41553257 + AT_rich Low_complexity Low_complexity 1 27 0 5575 170 78 26 chr9 100718192 100720097 -41551347 - L1MC2 LINE L1 -11 6333 4339 11712 117 12 22 chr9 100720106 100721436 -41550008 + Tigger1 DNA MER2_type 24 1333 -1085 2097 115 34 52 chr9 100721436 100721818 -41549626 - THE1C LTR MaLR 0 375 1 11712 117 12 22 chr9 100721818 100722273 -41549171 + Tigger1 DNA MER2_type 1333 1791 -627 15886 186 46 15 chr9 100722302 100725869 -41545575 + L1MA5 LINE L1 187 3645 -3357 2037 93 34 10 chr9 100725869 100726160 -41545284 + AluSg SINE Alu 3 300 -10 15886 186 46 15 chr9 100726160 100727377 -41544067 + L1MA5 LINE L1 3645 4824 -2178 2310 142 19 6 chr9 100727377 100727736 -41543708 - THE1B LTR MaLR 0 364 1 15886 186 46 15 chr9 100727736 100729071 -41542373 + L1MA5 LINE L1 4824 7002 0 4027 131 24 5 chr9 100729080 100729704 -41541740 + Tigger1 DNA MER2_type 1783 2418 0 1579 209 7 0 chr9 100729704 100730006 -41541438 - L1MC2 LINE L1 -1809 4337 4034 655 318 102 43 chr9 100730204 100730858 -41540586 - L2 LINE L2 -582 2732 2040 1378 241 64 13 chr9 100731189 100731579 -41539865 - L2 LINE L2 -978 2336 1927 2226 91 10 0 chr9 100731620 100731927 -41539517 - AluY SINE Alu -1 310 1 606 293 102 73 chr9 100733005 100733550 -41537894 + L2 LINE L2 2709 3268 -4 183 314 76 19 chr9 100733550 100733655 -41537789 + L2 LINE L2 2946 3056 -216 22 0 0 0 chr9 100734646 100734668 -41536776 + AT_rich Low_complexity Low_complexity 1 22 0 902 159 0 0 chr9 100734946 100735078 -41536366 + FLAM_C SINE Alu 2 133 0 635 289 39 27 chr9 100735267 100735637 -41535807 - MLT1I LTR MaLR 0 409 5 576 178 15 89 chr9 100735684 100735819 -41535625 + L2 LINE L2 3187 3311 -2 261 326 21 0 chr9 100735883 100735978 -41535466 + L2 LINE L2 2511 2607 -707 4575 185 21 16 chr9 100736213 100737462 -41533982 - L1MB7 LINE L1 -16 6404 5143 1656 113 88 28 chr9 100737462 100737745 -41533699 - AluSx SINE Alu -10 302 3 4575 185 21 16 chr9 100737745 100738185 -41533259 - L1MB7 LINE L1 -1277 5143 4707 2084 122 0 0 chr9 100738185 100738481 -41532963 - AluSx SINE Alu -16 296 1 451 231 19 0 chr9 100738481 100738589 -41532855 - L1MB7 LINE L1 -1887 4495 4386 710 172 49 26 chr9 100738613 100738780 -41532664 - L1MB7 LINE L1 -3870 2512 2342 2227 82 3 3 chr9 100738788 100739080 -41532364 - AluSg SINE Alu -18 292 1 870 292 129 12 chr9 100739084 100739622 -41531822 + L2 LINE L2 2694 3313 0 195 167 0 0 chr9 100739622 100739664 -41531780 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 225 0 0 0 chr9 100739814 100739839 -41531605 + (TTG)n Simple_repeat Simple_repeat 1 25 0 561 243 77 35 chr9 100739865 100740034 -41531410 - MER5B DNA MER1_type -2 176 1 251 287 26 70 chr9 100741002 100741117 -41530327 - MIR SINE MIR -58 150 41 314 308 133 0 chr9 100741152 100741295 -41530149 - L1M4 LINE L1 -2682 3464 3303 1070 164 5 26 chr9 100741453 100741648 -41529796 - MIR SINE MIR 0 262 72 338 256 85 0 chr9 100741665 100741747 -41529697 + MIR SINE MIR 12 100 -162 1420 222 78 47 chr9 100741751 100742197 -41529247 + MLT1C LTR MaLR 6 465 -2 198 344 56 32 chr9 100742210 100742335 -41529109 + MIR SINE MIR 127 254 -8 589 242 88 21 chr9 100742941 100743135 -41528309 + MIR SINE MIR 50 256 -6 185 255 196 54 chr9 100743266 100743450 -41527994 - MIR SINE MIR -52 210 1 351 307 167 27 chr9 100743854 100744004 -41527440 - L2 LINE L2 0 3272 3102 231 36 0 0 chr9 100744082 100744110 -41527334 + (A)n Simple_repeat Simple_repeat 1 28 0 3112 166 31 15 chr9 100744170 100744759 -41526685 + L1MB7 LINE L1 5566 6163 -21 352 172 162 30 chr9 100744972 100745071 -41526373 - MLT1K LTR MaLR -19 569 458 221 143 14 43 chr9 100745622 100745692 -41525752 + GA-rich Low_complexity Low_complexity 2 69 0 335 241 48 0 chr9 100746128 100746211 -41525233 - MIR3 SINE MIR -9 199 113 792 233 76 24 chr9 100746427 100746637 -41524807 - MIR SINE MIR -35 227 7 319 217 0 149 chr9 100747519 100747609 -41523835 - MER103 DNA DNA -16 150 96 2105 96 7 0 chr9 100747609 100747917 -41523527 - AluSx SINE Alu 0 310 1 319 217 0 149 chr9 100747917 100748000 -41523444 - MER103 DNA DNA -70 96 2 563 335 25 15 chr9 100748530 100748733 -41522711 + MIR SINE MIR 47 251 -11 305 311 17 34 chr9 100748760 100748879 -41522565 - MLT1J2 LTR MaLR -30 420 304 263 212 20 111 chr9 100748940 100749039 -41522405 - MLT1J2 LTR MaLR -288 162 73 364 230 58 43 chr9 100749074 100749213 -41522231 + MIR SINE MIR 65 205 -57 248 233 0 17 chr9 100749618 100749678 -41521766 + (TG)n Simple_repeat Simple_repeat 1 59 0 2228 122 0 0 chr9 100749912 100750223 -41521221 + AluSx SINE Alu 1 311 -1 588 261 9 66 chr9 100750248 100750459 -41520985 + L3 LINE CR1 1305 1503 -74 216 97 0 0 chr9 100750543 100750574 -41520870 + (TG)n Simple_repeat Simple_repeat 2 32 0 387 0 0 0 chr9 100750961 100751004 -41520440 + (TG)n Simple_repeat Simple_repeat 2 44 0 283 282 53 47 chr9 100751354 100751524 -41519920 + MIR SINE MIR 21 191 -71 433 321 24 49 chr9 100752315 100752561 -41518883 + MIR SINE MIR 12 251 -11 7790 24 0 0 chr9 100754502 100755612 -41515832 - L1PA3 LINE L1 0 6155 5050 308 255 22 76 chr9 100755833 100755991 -41515453 + MER20B DNA MER1_type 68 219 0 376 324 97 0 chr9 100756298 100756443 -41515001 - MIR3 SINE MIR -44 164 6 358 139 23 0 chr9 100756551 100756637 -41514807 + (CA)n Simple_repeat Simple_repeat 2 89 0 286 195 297 17 chr9 100757205 100757323 -41514121 + MER5A DNA MER1_type 4 154 -35 989 292 44 73 chr9 100757353 100757833 -41513611 + L2 LINE L2 2848 3313 0 389 281 20 55 chr9 100757926 100758072 -41513372 - MIR3 SINE MIR -63 145 5 663 265 79 28 chr9 100758559 100758774 -41512670 + MIR SINE MIR 22 247 -15 382 295 76 0 chr9 100758865 100758970 -41512474 + L2 LINE L2 3190 3302 -11 180 0 0 0 chr9 100758971 100758991 -41512453 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2473 84 0 0 chr9 100759046 100759342 -41512102 + AluSp SINE Alu 1 296 -17 205 319 62 18 chr9 100760439 100760552 -41510892 + L3 LINE CR1 859 976 -601 568 283 11 5 chr9 100761865 100762082 -41509362 + L1MC4a LINE L1 6350 6559 -1249 4079 215 82 10 chr9 100762116 100762448 -41508996 + L1MC4 LINE L1 6721 7028 -1014 1989 140 14 0 chr9 100762448 100762734 -41508710 + AluSx SINE Alu 1 290 -22 4079 215 82 10 chr9 100762734 100763511 -41507933 + L1MC4 LINE L1 7028 7910 -132 333 314 147 6 chr9 100763936 100764092 -41507352 - L2 LINE L2 -2 3270 3093 556 265 118 0 chr9 100764528 100764698 -41506746 - MIR SINE MIR -48 214 25 336 233 55 0 chr9 100764817 100764890 -41506554 - MIR SINE MIR -112 150 74 2259 103 3 0 chr9 100764951 100765243 -41506201 + AluSp SINE Alu 2 294 -19 374 291 43 28 chr9 100765890 100766031 -41505413 + L3 LINE CR1 1308 1450 -127 702 310 20 62 chr9 100766432 100766623 -41504821 - L3 LINE CR1 -2 1575 1404 1250 228 80 51 chr9 100766623 100767074 -41504370 - MLT1C LTR MaLR 0 467 4 702 310 20 62 chr9 100767074 100767240 -41504204 - L3 LINE CR1 -173 1404 1233 1800 122 0 0 chr9 100767309 100767546 -41503898 - AluSx SINE Alu -75 237 1 615 239 38 52 chr9 100767718 100767931 -41503513 - MIR SINE MIR -51 211 2 1325 217 89 35 chr9 100768262 100768668 -41502776 - MLT1J LTR MaLR -2 509 82 356 315 44 16 chr9 100768706 100768871 -41502573 + MIR3 SINE MIR 9 180 -28 305 223 100 62 chr9 100769474 100769604 -41501840 - L1ME4a LINE L1 0 6121 5987 1937 135 31 7 chr9 100769677 100769965 -41501479 - AluJb SINE Alu -17 295 1 300 350 0 10 chr9 100770130 100770233 -41501211 - L1ME LINE L1 -420 5701 5600 1775 173 0 33 chr9 100770425 100770732 -41500712 + AluJb SINE Alu 1 297 -15 515 152 0 0 chr9 100771528 100771607 -41499837 + MLT1E1 LTR MaLR 535 613 -41 413 270 18 0 chr9 100771852 100771963 -41499481 - MIR SINE MIR -78 130 18 882 200 27 5 chr9 100773366 100773551 -41497893 - MER53 DNA DNA 0 189 1 357 341 31 45 chr9 100773745 100773968 -41497476 - L3 LINE CR1 -104 1473 1254 4256 161 90 38 chr9 100774044 100774929 -41496515 - MER21A LTR ERV1 0 931 1 855 156 0 0 chr9 100775050 100775178 -41496266 + FLAM_C SINE Alu 1 128 -5 1914 157 0 4 chr9 100775331 100775611 -41495833 + AluJo SINE Alu 1 279 -33 635 244 81 14 chr9 100775642 100775873 -41495571 - MIR SINE MIR -22 240 5 429 239 94 72 chr9 100776289 100776469 -41494975 - MIR3 SINE MIR -22 186 3 857 151 0 29 chr9 100776738 100776877 -41494567 + FLAM_C SINE Alu 2 136 -7 506 325 97 6 chr9 100776973 100777371 -41494073 + L1MC4a LINE L1 5566 6004 -117 2110 103 0 62 chr9 100777435 100777755 -41493689 - AluSx SINE Alu -12 300 1 2489 95 0 6 chr9 100777851 100778166 -41493278 - AluSq SINE Alu 0 313 1 306 279 43 12 chr9 100778343 100778512 -41492932 + L1MC/D LINE L1 4885 5059 -1087 580 257 71 40 chr9 100778735 100779014 -41492430 + L1MC/D LINE L1 5263 5550 -718 308 194 10 82 chr9 100779021 100779056 -41492388 + L1MC/D LINE L1 5617 5653 -2155 1734 176 18 89 chr9 100779056 100779449 -41491995 - MLT1A1 LTR MaLR 0 365 1 308 194 10 82 chr9 100779449 100779460 -41491984 + L1MC/D LINE L1 5653 5663 -2145 2966 182 27 62 chr9 100779460 100779671 -41491773 + MER82 DNA MER2_type 1 218 -435 2235 90 3 3 chr9 100779671 100779959 -41491485 + AluSc SINE Alu 1 288 -21 2966 182 27 62 chr9 100779959 100780424 -41491020 + MER82 DNA MER2_type 218 653 0 308 194 10 82 chr9 100780424 100780474 -41490970 + L1MC/D LINE L1 5663 5707 -2101 285 324 49 10 chr9 100780481 100780583 -41490861 + MER5B DNA MER1_type 66 171 -7 741 241 50 53 chr9 100780594 100780717 -41490727 - L1ME4a LINE L1 -296 5825 5703 1725 143 71 18 chr9 100780717 100780997 -41490447 + AluSx SINE Alu 1 295 -17 741 241 50 53 chr9 100780997 100781172 -41490272 - L1ME4a LINE L1 -418 5703 5528 432 375 10 5 chr9 100781791 100781983 -41489461 - MIR SINE MIR -56 206 14 794 256 141 7 chr9 100782024 100782294 -41489150 - L2 LINE L2 0 3313 3008 402 291 75 8 chr9 100782564 100782698 -41488746 + L2 LINE L2 3170 3312 -1 265 269 65 0 chr9 100783132 100783225 -41488219 + MIR SINE MIR 56 154 -108 182 296 56 0 chr9 100783293 100783347 -41488097 - L2 LINE L2 -53 3219 3163 225 293 75 19 chr9 100783664 100783770 -41487674 - L2 LINE L2 -240 3032 2921 326 151 0 0 chr9 100784171 100784224 -41487220 + Tigger5 DNA MER2_type 27 79 -2244 * 1591 89 42 4 chr9 100784213 100784450 -41486994 + Tigger5 DNA MER2_type 2077 2322 -1 252 327 10 30 chr9 100784499 100784600 -41486844 + L2 LINE L2 3215 3313 0 264 30 0 0 chr9 100785200 100785233 -41486211 + (A)n Simple_repeat Simple_repeat 1 33 0 551 204 35 59 chr9 100786082 100786301 -41485143 + MIR3 SINE MIR 19 221 -41 240 226 0 19 chr9 100787581 100787634 -41483810 + MLT1K LTR MaLR 188 239 -349 252 250 0 0 chr9 100787870 100787930 -41483514 + MLT1K LTR MaLR 188 247 -341 310 267 0 0 chr9 100788036 100788111 -41483333 + MLT1K LTR MaLR 512 586 -2 346 316 96 6 chr9 100788923 100789100 -41482344 - MIR3 SINE MIR -8 200 8 421 274 54 12 chr9 100789963 100790131 -41481313 + MLT1K LTR MaLR 405 579 -9 213 336 200 23 chr9 100790647 100790833 -41480611 - L2 LINE L2 -18 3254 3102 552 229 89 101 chr9 100790833 100790956 -41480488 + MER45A DNA AcHobo 1 123 -1458 1669 150 6 94 chr9 100790956 100791297 -41480147 - AluJo SINE Alu -1 311 1 552 229 89 101 chr9 100791297 100791352 -41480092 + MER45A DNA AcHobo 123 177 -1 213 336 200 23 chr9 100791352 100791430 -41480014 - L2 LINE L2 -170 3102 2943 371 310 134 6 chr9 100791609 100791780 -41479664 + MIR SINE MIR 46 238 -24 2253 114 0 3 chr9 100792089 100792386 -41479058 + AluSq SINE Alu 1 296 -17 2069 101 4 0 chr9 100792632 100792899 -41478545 + AluSx SINE Alu 1 268 -44 379 119 50 38 chr9 100792899 100793059 -41478385 + (TA)n Simple_repeat Simple_repeat 1 162 0 1683 162 26 16 chr9 100793645 100793954 -41477490 + AluJo SINE Alu 1 312 0 513 180 23 8 chr9 100793958 100794086 -41477358 + GA-rich Low_complexity Low_complexity 2 131 0 432 159 14 0 chr9 100794140 100794209 -41477235 + AluJ/FRAM SINE Alu 220 289 -23 490 292 56 20 chr9 100794698 100794893 -41476551 - MIR SINE MIR -48 214 13 251 254 18 0 chr9 100795717 100795772 -41475672 + GA-rich Low_complexity Low_complexity 1 56 0 391 152 0 0 chr9 100796974 100797040 -41474404 - L1MB8 LINE L1 -2 6176 6111 1667 153 4 4 chr9 100797040 100797288 -41474156 + AluJo SINE Alu 1 248 -64 3602 177 49 48 chr9 100797324 100798144 -41473300 - L1MB8 LINE L1 -52 6126 5292 1619 173 17 20 chr9 100798144 100798444 -41473000 - AluJo SINE Alu -12 300 2 3602 177 49 48 chr9 100798444 100798955 -41472489 - L1MB8 LINE L1 -886 5292 4783 1090 264 119 33 chr9 100799201 100799562 -41471882 - L1MB8 LINE L1 -2195 3951 3622 896 135 0 23 chr9 100799562 100799695 -41471749 - FLAM_C SINE Alu -3 130 1 1090 264 119 33 chr9 100799695 100800113 -41471331 - L1MB8 LINE L1 -2524 3622 3105 1338 198 26 61 chr9 100800180 100800191 -41471253 - MLT1A1 LTR MaLR -4 453 443 2750 63 133 5 chr9 100800191 100800588 -41470856 + LTR7 LTR ERV1 1 448 -2 1338 198 26 61 chr9 100800588 100800957 -41470487 - MLT1A1 LTR MaLR -14 443 1 723 160 0 42 chr9 100801052 100801171 -41470273 + FLAM_C SINE Alu 2 115 -28 270 232 161 39 chr9 100801197 100801263 -41470181 + L1MC/D LINE L1 5701 5758 -2050 2735 83 100 5 chr9 100801263 100801672 -41469772 + LTR7 LTR ERV1 1 448 -2 270 232 161 39 chr9 100801672 100801760 -41469684 + L1MC/D LINE L1 5758 5874 -1934 341 324 168 62 chr9 100802621 100802784 -41468660 + L3 LINE CR1 1121 1265 -312 2283 110 0 0 chr9 100802784 100803076 -41468368 + AluSg SINE Alu 1 292 -18 341 324 168 62 chr9 100803076 100803298 -41468146 + L3 LINE CR1 1265 1547 -30 1917 92 37 7 chr9 100804200 100804494 -41466950 + LTR7 LTR ERV1 146 448 -2 2775 108 32 5 chr9 100804496 100804930 -41466514 + HERVH LTR ERV1 1 446 -7267 14311 103 5 29 chr9 100805117 100807366 -41464078 + HERVH LTR ERV1 800 2995 -4718 5626 100 9 2 chr9 100807345 100808193 -41463251 + HERVH LTR ERV1 3140 3993 -3720 * 4138 135 0 35 chr9 100808195 100808697 -41462747 + HERVH LTR ERV1 4488 4961 -2752 2961 3 0 0 chr9 100808697 100809008 -41462436 + AluYa5 SINE Alu 1 311 0 4138 135 0 35 chr9 100809008 100809187 -41462257 + HERVH LTR ERV1 4961 5145 -2568 1155 132 78 0 chr9 100809192 100809396 -41462048 + HERVH LTR ERV1 5600 5819 -1894 * 2155 119 48 13 chr9 100809394 100809773 -41461671 + HERVH LTR ERV1 7322 7713 0 2618 68 119 27 chr9 100809773 100810183 -41461261 + LTR7 LTR ERV1 1 448 -2 511 269 111 18 chr9 100810215 100810386 -41461058 - MIR SINE MIR -44 218 32 261 291 75 52 chr9 100811801 100811935 -41459509 - MIR SINE MIR -31 231 95 1323 122 104 0 chr9 100812224 100812446 -41458998 - MLT1B LTR MaLR 0 390 146 2013 124 18 0 chr9 100812461 100812736 -41458708 - AluSx SINE Alu -32 280 1 2561 186 35 13 chr9 100813052 100813595 -41457849 + L1MA10 LINE L1 5780 6334 0 2107 131 14 0 chr9 100813627 100813924 -41457520 + AluSx SINE Alu 11 311 -1 2138 145 3 0 chr9 100813930 100814241 -41457203 + AluJb SINE Alu 1 312 0 594 178 26 12 chr9 100814241 100814422 -41457022 - L1MB4 LINE L1 -140 6031 5852 1885 214 6 3 chr9 100814472 100814836 -41456608 + MLT1A1 LTR MaLR 1 365 0 392 321 47 42 chr9 100814972 100815162 -41456282 + L2 LINE L2 3119 3309 -4 1940 131 0 72 chr9 100815265 100815600 -41455844 + AluJo SINE Alu 1 311 -1 1536 149 57 223 chr9 100815676 100815874 -41455570 + L1MD3 LINE L1 7322 7551 -444 2328 112 0 3 chr9 100815874 100816186 -41455258 + AluSx SINE Alu 1 311 -1 1536 149 57 223 chr9 100816186 100816627 -41454817 + L1MD3 LINE L1 7551 7802 -193 1557 61 0 0 chr9 100816627 100816807 -41454637 - AluY SINE Alu -131 180 1 1536 149 57 223 chr9 100816807 100816972 -41454472 + L1MD3 LINE L1 7802 7993 -2 2208 123 7 0 chr9 100816981 100817282 -41454162 + AluSx SINE Alu 1 303 -9 374 255 11 0 chr9 100817284 100817378 -41454066 - L1M4 LINE L1 -1534 4612 4518 1947 95 95 7 chr9 100817659 100817944 -41453500 + AluSg SINE Alu 1 310 0 914 71 0 0 chr9 100817975 100818087 -41453357 + AluSp/q SINE Alu 186 297 -16 446 204 84 35 chr9 100818164 100818306 -41453138 - MER69 DNA AcHobo 0 2526 2378 1689 133 82 17 chr9 100818836 100819129 -41452315 + AluJb SINE Alu 1 312 0 331 294 50 30 chr9 100820416 100820607 -41450837 - MIR SINE MIR -33 229 32 503 278 132 14 chr9 100820922 100821134 -41450310 + MIR SINE MIR 20 256 -6 247 293 120 15 chr9 100821985 100822118 -41449326 - L2 LINE L2 -614 2700 2554 451 293 23 15 chr9 100822257 100822390 -41449054 + L2 LINE L2 3139 3272 0 214 235 284 0 chr9 100822775 100822856 -41448588 + MIR SINE MIR 45 148 -60 499 246 109 0 chr9 100823223 100823361 -41448083 - MIR SINE MIR -11 251 99 892 243 77 21 chr9 100823818 100824053 -41447391 + MIR SINE MIR 15 262 0 2427 74 0 23 chr9 100824170 100824469 -41446975 - AluSg1 SINE Alu -17 292 1 306 263 0 0 chr9 100825598 100825674 -41445770 + MIR SINE MIR 183 258 -4 710 290 37 5 chr9 100826720 100826924 -41444520 - MIR SINE MIR -31 231 20 182 266 51 13 chr9 100827217 100827296 -41444148 - L3 LINE CR1 -117 1460 1379 269 307 23 11 chr9 100827347 100827435 -41444009 + MIR SINE MIR 52 140 -122 247 270 70 20 chr9 100827459 100827559 -41443885 + L3 LINE CR1 1290 1394 -183 29 28 0 0 chr9 100827617 100827653 -41443791 + AT_rich Low_complexity Low_complexity 1 36 0 2337 99 0 3 chr9 100827723 100828027 -41443417 - AluY SINE Alu -8 303 1 2332 99 3 10 chr9 100828116 100828428 -41443016 - AluSx SINE Alu -2 310 1 21 0 0 0 chr9 100829152 100829173 -41442271 + AT_rich Low_complexity Low_complexity 1 21 0 385 266 76 32 chr9 100829451 100829609 -41441835 - L1ME4a LINE L1 -31 6090 5926 627 257 108 41 chr9 100829708 100829892 -41441552 - L1ME4a LINE L1 0 6121 5951 1878 166 7 0 chr9 100829892 100830187 -41441257 - AluJb SINE Alu -15 297 1 627 257 108 41 chr9 100830187 100830204 -41441240 - L1ME4a LINE L1 -170 5951 5937 2503 87 0 0 chr9 100830204 100830515 -41440929 - AluY SINE Alu 0 311 1 627 257 108 41 chr9 100830515 100830775 -41440669 - L1ME4a LINE L1 -184 5937 5628 1080 48 0 0 chr9 100830790 100830916 -41440528 - AluSp/q SINE Alu -6 307 182 198 311 33 11 chr9 100881177 100881267 -41390177 + MIR SINE MIR 30 121 -87 231 328 157 29 chr9 100881387 100881591 -41389853 + MIR SINE MIR 20 249 -13 216 185 109 54 chr9 100881640 100881732 -41389712 - L2 LINE L2 -3 3269 3173 248 209 0 0 chr9 100881761 100881804 -41389640 + MER5B DNA MER1_type 6 48 -130 1352 188 107 42 chr9 100881874 100881956 -41389488 - L1ME1 LINE L1 -6 6160 6085 1596 154 68 18 chr9 100881956 100882236 -41389208 + AluJo SINE Alu 1 294 -18 1352 188 107 42 chr9 100882236 100882509 -41388935 - L1ME1 LINE L1 -81 6085 5782 422 256 120 0 chr9 100882513 100882638 -41388806 + MER5B DNA MER1_type 34 173 -5 522 321 0 6 chr9 100883277 100883436 -41388008 + MIR3 SINE MIR 49 206 -2 1796 138 9 4 chr9 100883546 100884005 -41387439 - L1MC1 LINE L1 -19 6314 5804 1281 149 5 10 chr9 100884010 100884218 -41387226 + MER2 DNA MER2_type 1 207 -138 198 0 0 0 chr9 100884253 100884275 -41387169 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1984 110 4 11 chr9 100884294 100884575 -41386869 + AluSx SINE Alu 1 279 -33 342 258 0 0 chr9 100884599 100884665 -41386779 + MER2 DNA MER2_type 280 345 0 2873 114 18 7 chr9 100884667 100885115 -41386329 - L1MC/D LINE L1 -535 5798 5346 483 211 0 0 chr9 100885115 100885210 -41386234 + MIR SINE MIR 146 240 -22 207 297 103 32 chr9 100885751 100885906 -41385538 + L2 LINE L2 2763 2928 -386 494 144 360 0 chr9 100886905 100887044 -41384400 + MER5A DNA MER1_type 1 189 0 264 276 26 26 chr9 100887656 100887772 -41383672 - MER113 DNA MER1_type? -405 116 1 191 143 0 0 chr9 100888829 100888857 -41382587 - L2 LINE L2 -21 3292 3265 1672 162 3 24 chr9 100888894 100889191 -41382253 - AluJo SINE Alu -20 292 2 217 245 96 11 chr9 100889193 100889287 -41382157 - MIR SINE MIR -114 148 47 247 313 174 19 chr9 100889676 100889986 -41381458 - L2 LINE L2 -362 2952 2595 766 244 121 23 chr9 100890626 100890929 -41380515 - L1ME1 LINE L1 -320 5801 5460 887 121 0 6 chr9 100891230 100891387 -41380057 - Charlie5 DNA MER1_type -27 2585 2430 349 196 0 0 chr9 100891396 100891452 -41379992 - Charlie5 DNA MER1_type -2556 56 1 300 280 61 41 chr9 100891709 100892002 -41379442 - L1ME1 LINE L1 -1669 4477 4179 690 231 101 34 chr9 100892041 100892249 -41379195 + MIR SINE MIR 2 223 -39 227 31 31 0 chr9 100892273 100892305 -41379139 + (TA)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chr9 100892305 100892340 -41379104 + AT_rich Low_complexity Low_complexity 1 35 0 1426 244 77 36 chr9 100892665 100893227 -41378217 - L2 LINE L2 0 3313 2733 5204 148 31 14 chr9 100893234 100894556 -41376888 - L1MB7 LINE L1 -16 6168 4822 932 222 103 60 chr9 100894640 100894942 -41376502 - L2 LINE L2 -733 2581 2267 349 348 83 48 chr9 100895008 100895405 -41376039 - L1ME1 LINE L1 -2419 3727 3317 490 321 68 38 chr9 100896077 100896370 -41375074 - L1ME1 LINE L1 -2929 3217 2916 688 318 148 30 chr9 100896666 100897395 -41374049 - L1MEd LINE L1 -681 1210 184 387 296 143 23 chr9 100899211 100899427 -41372017 - MIR SINE MIR -1 261 20 913 174 99 52 chr9 100899493 100899706 -41371738 + MER58A DNA MER1_type 1 223 -1 423 258 50 8 chr9 100899733 100899853 -41371591 + MIR SINE MIR 36 160 -102 186 341 0 68 chr9 100900862 100900950 -41370494 - L2 LINE L2 -212 3060 2979 296 215 125 49 chr9 100901242 100901386 -41370058 - LTR33 LTR ERVL -232 289 135 252 196 39 0 chr9 100901563 100901614 -41369830 - LTR33 LTR ERVL -363 158 106 180 0 0 0 chr9 100901660 100901680 -41369764 + (CAGGG)n Simple_repeat Simple_repeat 5 24 0 897 275 121 16 chr9 100901968 100902281 -41369163 - LTR16A LTR ERVL 0 450 105 373 227 80 60 chr9 100902383 100902533 -41368911 - MER5A DNA MER1_type -2 187 35 436 282 9 0 chr9 100902856 100902966 -41368478 + MIR SINE MIR 37 147 -61 186 370 60 0 chr9 100903225 100903325 -41368119 - L2 LINE L2 -24 3248 3143 461 315 68 7 chr9 100903447 100903593 -41367851 + MIR SINE MIR 35 189 -73 220 169 17 34 chr9 100903650 100903709 -41367735 + GA-rich Low_complexity Low_complexity 2 59 0 550 274 93 32 chr9 100904151 100904399 -41367045 - L3 LINE CR1 -11 1566 1304 3215 36 0 5 chr9 100904559 100904947 -41366497 - L1PA4 LINE L1 0 6155 5770 198 0 0 0 chr9 100904949 100904971 -41366473 + (TTA)n Simple_repeat Simple_repeat 3 24 0 45501 34 4 1 chr9 100904971 100911092 -41360352 - L1PA3 LINE L1 -18 6137 1 2166 183 75 27 chr9 100911740 100912221 -41359223 - MLT1D LTR MaLR 0 505 2 350 200 154 9 chr9 100912980 100913090 -41358354 - L2 LINE L2 -6 3266 3141 1575 190 93 50 chr9 100913422 100913865 -41357579 - MLT1C LTR MaLR 0 467 6 342 67 0 0 chr9 100913894 100913939 -41357505 + (CA)n Simple_repeat Simple_repeat 1 45 0 319 330 160 19 chr9 100914222 100914428 -41357016 - L3 LINE CR1 -136 1441 1207 687 219 51 0 chr9 100915404 100915541 -41355903 - MER5B DNA MER1_type -12 166 23 890 187 33 22 chr9 100915542 100915724 -41355720 + MLT1F1 LTR MaLR 368 551 -16 658 273 94 63 chr9 100916196 100916559 -41354885 + L2 LINE L2 2897 3270 -43 210 293 0 0 chr9 100916566 100916607 -41354837 + MIR SINE MIR 109 149 -59 427 297 65 83 chr9 100916630 100916859 -41354585 - L1ME LINE L1 -540 5581 5357 333 238 65 83 chr9 100918337 100918392 -41353052 + MER5B DNA MER1_type 14 68 -110 2046 135 0 3 chr9 100918392 100918703 -41352741 + AluSx SINE Alu 1 310 -2 333 238 65 83 chr9 100918703 100918815 -41352629 + MER5B DNA MER1_type 68 178 0 541 282 43 64 chr9 100918854 100919180 -41352264 - L3 LINE CR1 -72 1505 1187 318 374 37 26 chr9 100919183 100919373 -41352071 + L1ME3 LINE L1 155 346 -5859 648 306 87 30 chr9 100920005 100920097 -41351347 + L1ME3 LINE L1 853 938 -5277 1517 124 121 0 chr9 100920097 100920368 -41351076 + AluSx SINE Alu 4 304 0 648 306 87 30 chr9 100920368 100921202 -41350242 + L1ME3 LINE L1 938 1764 -4451 705 261 72 49 chr9 100921214 100921605 -41349839 + L1ME3 LINE L1 4747 5146 -1069 2477 162 26 12 chr9 100921608 100922028 -41349416 - MSTB LTR MaLR 0 426 1 1860 227 18 14 chr9 100922210 100922799 -41348645 + L1ME3 LINE L1 5160 5755 -476 2046 146 0 0 chr9 100922843 100923144 -41348300 - AluSx SINE Alu -11 301 1 1462 209 18 133 chr9 100923144 100923534 -41347910 + L1M4 LINE L1 4433 4703 -1443 8368 82 10 112 chr9 100923534 100925077 -41346367 + SVA Other Other 1 1386 0 1462 209 18 133 chr9 100925077 100925410 -41346034 + L1M4 LINE L1 4703 5073 -1073 2189 111 129 23 chr9 100925785 100926172 -41345272 + MSTA LTR MaLR 1 428 0 469 262 69 14 chr9 100926214 100926359 -41345085 + L1ME3 LINE L1 5997 6149 -82 606 209 86 31 chr9 100926511 100926674 -41344770 - MIR SINE MIR -6 256 85 1461 216 42 73 chr9 100926684 100927134 -41344310 - MLT1J LTR MaLR -14 497 62 200 290 101 0 chr9 100927215 100927284 -41344160 - MIR SINE MIR -162 100 25 750 201 23 6 chr9 100928361 100928535 -41342909 - MER96B DNA MER1_type? 0 417 241 246 294 12 0 chr9 100928839 100928924 -41342520 + MIR3 SINE MIR 4 89 -119 812 213 57 66 chr9 100928925 100929042 -41342402 - MLT1C LTR MaLR 0 467 350 1769 181 30 19 chr9 100929042 100929413 -41342031 - THE1C LTR MaLR 0 375 1 812 213 57 66 chr9 100929413 100929671 -41341773 - MLT1C LTR MaLR -117 350 6 263 264 28 0 chr9 100929676 100929748 -41341696 + MIR3 SINE MIR 86 159 -49 251 342 8 33 chr9 100929964 100930084 -41341360 + L3 LINE CR1 1051 1167 -410 953 169 90 73 chr9 100930108 100930170 -41341274 + MER96B DNA MER1_type? 20 79 -338 2095 146 33 33 chr9 100930170 100930534 -41340910 - THE1B LTR MaLR 0 364 1 953 169 90 73 chr9 100930534 100930815 -41340629 + MER96B DNA MER1_type? 79 369 -48 196 286 107 0 chr9 100931016 100931072 -41340372 + L3 LINE CR1 1514 1575 -2 27 62 0 0 chr9 100931991 100932039 -41339405 + AT_rich Low_complexity Low_complexity 1 48 0 236 274 0 0 chr9 100932255 100932306 -41339138 - MIR SINE MIR -56 206 156 275 279 125 29 chr9 100932576 100932680 -41338764 - MIR SINE MIR -126 136 23 387 268 32 64 chr9 100932845 100933002 -41338442 - MIR SINE MIR -40 222 71 456 246 88 24 chr9 100934021 100934185 -41337259 - MIR SINE MIR -51 157 33 246 304 115 54 chr9 100934889 100935037 -41336407 - L3 LINE CR1 -190 1387 1231 375 316 0 0 chr9 100935057 100935155 -41336289 - L3 LINE CR1 -540 1037 940 282 56 0 0 chr9 100935283 100935319 -41336125 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 286 174 214 10 chr9 100935448 100935546 -41335898 - MIR SINE MIR -16 246 129 1048 88 40 7 chr9 100935723 100935871 -41335573 + AluSx SINE Alu 1 153 -159 204 349 78 0 chr9 100936344 100936473 -41334971 + MIR SINE MIR 66 204 -58 295 321 45 30 chr9 100936992 100937126 -41334318 + L2 LINE L2 3137 3272 0 1800 159 7 0 chr9 100937154 100937449 -41333995 - AluJo SINE Alu -10 302 6 509 245 49 42 chr9 100937774 100937917 -41333527 - MIR SINE MIR -70 192 49 21 0 0 0 chr9 100938755 100938776 -41332668 + AT_rich Low_complexity Low_complexity 1 21 0 185 267 83 0 chr9 100938795 100938855 -41332589 - L2 LINE L2 -6 3266 3202 596 223 65 0 chr9 100939251 100939390 -41332054 - MIR SINE MIR -85 177 30 385 299 126 76 chr9 100939509 100939944 -41331500 - L3 LINE CR1 -395 1182 726 603 287 28 0 chr9 100940237 100940418 -41331026 + MIR SINE MIR 23 207 -55 301 234 93 19 chr9 100941264 100941371 -41330073 - MIR3 SINE MIR -45 163 49 741 233 37 21 chr9 100941499 100941688 -41329756 + MIR SINE MIR 52 243 -19 224 158 0 0 chr9 100941792 100941830 -41329614 - L2 LINE L2 0 3272 3235 250 268 0 0 chr9 100942473 100942529 -41328915 - L2 LINE L2 0 3313 3258 432 305 66 42 chr9 100942533 100942700 -41328744 + MIR SINE MIR 8 178 -84 663 306 157 22 chr9 100942727 100943351 -41328093 + L2 LINE L2 2015 2722 -592 186 43 0 0 chr9 100943531 100943554 -41327890 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 242 289 122 74 chr9 100943555 100943891 -41327553 + L2 LINE L2 2919 3270 -2 342 143 0 0 chr9 100945402 100945465 -41325979 + (CA)n Simple_repeat Simple_repeat 2 64 0 1044 230 133 24 chr9 100945688 100946071 -41325373 + LTR16A1 LTR ERVL 31 455 -2 199 255 0 21 chr9 100946734 100946781 -41324663 + MIR3 SINE MIR 144 189 -19 1705 161 0 18 chr9 100947409 100947694 -41323750 + AluJb SINE Alu 1 280 -32 1381 219 100 66 chr9 100947706 100948176 -41323268 + MLT1D LTR MaLR 20 505 0 729 234 25 6 chr9 100948746 100948904 -41322540 + MIR SINE MIR 4 164 -98 1139 200 48 5 chr9 100948910 100949120 -41322324 - MER58A DNA MER1_type 0 224 6 1997 84 4 0 chr9 100949755 100950018 -41321426 + AluSx SINE Alu 11 274 -38 1131 72 7 0 chr9 100950042 100950194 -41321250 + L1MB4 LINE L1 6028 6180 0 282 304 86 45 chr9 100950937 100951378 -41320066 - L1M4 LINE L1 -3558 2588 2130 256 287 35 43 chr9 100951952 100952067 -41319377 - HAL1b LINE L1 -887 461 348 198 0 0 0 chr9 100952283 100952305 -41319139 + (A)n Simple_repeat Simple_repeat 1 22 0 432 189 27 23 chr9 100952305 100952411 -41319033 - L1MC3 LINE L1 -5 7990 7661 405 192 13 0 chr9 100952513 100952591 -41318853 + MLT1F1 LTR MaLR 489 567 0 497 312 67 42 chr9 100952608 100953041 -41318403 + L2 LINE L2 2532 2975 -339 180 176 0 0 chr9 100953275 100953309 -41318135 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 275 377 51 7 chr9 100954601 100954739 -41316705 - L3 LINE CR1 -436 1141 998 2052 142 0 0 chr9 100954751 100955062 -41316382 + AluSx SINE Alu 1 311 -1 995 183 39 0 chr9 100955245 100955425 -41316019 - MER5A DNA MER1_type -2 187 1 211 111 28 0 chr9 100955963 100955999 -41315445 + (TG)n Simple_repeat Simple_repeat 2 38 0 2215 92 0 3 chr9 100956155 100956447 -41314997 - AluSx SINE Alu -21 291 1 317 161 21 2 chr9 100956854 100956915 -41314529 + MIR3 SINE MIR 118 172 -36 276 289 26 0 chr9 100957140 100957216 -41314228 - MIR SINE MIR -88 174 97 4174 161 18 6 chr9 100957801 100958526 -41312918 - L1MB3 LINE L1 0 6183 5450 347 258 34 59 chr9 100958531 100958678 -41312766 - MIR SINE MIR -77 131 16 547 277 29 48 chr9 100958709 100958915 -41312529 + Charlie8 DNA MER1_type 1 202 -2215 843 199 12 0 chr9 100958929 100959095 -41312349 - FRAM SINE Alu -8 168 1 242 330 35 0 chr9 100959423 100959538 -41311906 + MIR3 SINE MIR 52 170 -38 214 302 19 38 chr9 100960110 100960216 -41311228 - MIR SINE MIR -86 122 19 230 299 35 23 chr9 100960891 100960978 -41310466 - MIR3 SINE MIR -20 188 101 579 271 47 14 chr9 100961459 100961673 -41309771 - MIR SINE MIR -3 259 39 223 354 22 22 chr9 100961792 100961970 -41309474 + L2 LINE L2 2967 3144 -169 508 240 103 14 chr9 100961977 100962252 -41309192 - MLT1C LTR MaLR -8 459 98 403 231 94 31 chr9 100962254 100962414 -41309030 + L2 LINE L2 3137 3306 -7 2923 161 94 5 chr9 100962828 100963423 -41308021 + L1MC3 LINE L1 6691 7338 -447 323 216 33 98 chr9 100963823 100963976 -41307468 + MIR SINE MIR 43 185 -77 455 261 8 8 chr9 100964210 100964329 -41307115 + MIR3 SINE MIR 85 203 -5 2152 94 16 13 chr9 100964346 100964653 -41306791 + AluSc SINE Alu 1 308 -1 451 230 13 72 chr9 100965027 100965179 -41306265 - MIR SINE MIR -50 212 70 198 203 25 63 chr9 100965223 100965302 -41306142 - MIR3 SINE MIR -130 78 3 460 276 148 13 chr9 100965518 100965740 -41305704 + L1ME LINE L1 5415 5648 -473 319 279 86 26 chr9 100966888 100967459 -41303985 - L1ME4a LINE L1 -5 6116 5490 240 295 21 11 chr9 100967543 100967638 -41303806 - L1P LINE L1 -748 5403 5308 469 236 22 23 chr9 100967913 100968073 -41303371 - L1ME4a LINE L1 -603 5518 5360 1231 214 31 7 chr9 100968082 100968372 -41303072 - AluJo SINE Alu -15 297 1 515 263 59 25 chr9 100968392 100968712 -41302732 - L1ME4a LINE L1 -777 5369 5039 252 86 0 0 chr9 100968722 100968757 -41302687 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 450 298 60 0 chr9 100969249 100969400 -41302044 + L3 LINE CR1 1346 1505 -72 695 253 0 19 chr9 100970214 100970372 -41301072 + MER5B DNA MER1_type 22 176 -2 185 271 80 44 chr9 100970400 100970512 -41300932 - MIR SINE MIR -123 85 19 591 319 80 39 chr9 100970735 100971146 -41300298 - L1ME4a LINE L1 -3290 2856 2429 222 240 0 40 chr9 100971169 100971219 -41300225 + L2 LINE L2 3265 3312 -1 307 336 67 39 chr9 100971219 100971427 -41300017 - L1ME4a LINE L1 -3725 2421 2208 406 229 98 3 chr9 100972256 100972375 -41299069 - MIR SINE MIR -66 196 65 620 196 15 0 chr9 100972401 100972534 -41298910 + L1MB4 LINE L1 6046 6180 0 182 315 14 41 chr9 100972540 100972613 -41298831 - MIR SINE MIR -102 106 36 211 333 77 13 chr9 100972702 100972780 -41298664 + MIR SINE MIR 14 96 -166 1845 125 0 21 chr9 100973213 100973494 -41297950 + AluSx SINE Alu 1 275 -37 206 105 53 35 chr9 100973595 100973652 -41297792 + (TA)n Simple_repeat Simple_repeat 2 59 0 452 294 81 34 chr9 100973812 100974077 -41297367 - L1ME LINE L1 -549 5621 5340 1871 105 9 69 chr9 100975131 100975463 -41295981 - AluSx SINE Alu 0 312 1 406 229 98 3 chr9 100976381 100976500 -41294944 - MIR SINE MIR -66 196 65 620 196 15 0 chr9 100976526 100976659 -41294785 + L1MB4 LINE L1 6046 6180 0 182 315 14 41 chr9 100976665 100976738 -41294706 - MIR SINE MIR -102 106 36 211 333 77 13 chr9 100976827 100976905 -41294539 + MIR SINE MIR 14 96 -166 1921 142 0 19 chr9 100977338 100977654 -41293790 + AluSx SINE Alu 1 310 -2 221 236 91 0 chr9 100977673 100977728 -41293716 - MIR SINE MIR -98 164 105 353 335 25 25 chr9 100977988 100978149 -41293295 + MIR3 SINE MIR 40 200 -8 1806 145 3 26 chr9 100979089 100979400 -41292044 - AluJo SINE Alu -7 305 2 355 243 0 103 chr9 100979462 100979529 -41291915 - MIR SINE MIR -77 131 77 1782 142 17 7 chr9 100979529 100979825 -41291619 + AluJb SINE Alu 1 299 -13 355 243 0 103 chr9 100979825 100979864 -41291580 - MIR SINE MIR -131 77 36 734 250 55 0 chr9 100979878 100980097 -41291347 - MIR SINE MIR -16 246 17 464 226 7 142 chr9 100980162 100980317 -41291127 - MIR SINE MIR -74 188 55 1025 142 28 0 chr9 100980427 100980603 -41290841 + FRAM SINE Alu 1 176 0 23 54 0 0 chr9 100980605 100980642 -41290802 + AT_rich Low_complexity Low_complexity 1 37 0 263 318 45 40 chr9 100981103 100981289 -41290155 + MIR3 SINE MIR 2 185 -53 204 310 95 0 chr9 100981469 100981591 -41289853 - MIR SINE MIR -63 145 18 199 222 48 16 chr9 100982022 100982085 -41289359 + L2 LINE L2 2995 3059 -213 194 274 176 10 chr9 100982677 100982779 -41288665 + L3 LINE CR1 1219 1337 -240 276 130 22 0 chr9 100982886 100982932 -41288512 + MIR SINE MIR 106 152 -110 1609 163 17 10 chr9 100982978 100983267 -41288177 + AluJb SINE Alu 1 291 -21 212 186 70 0 chr9 100983572 100983615 -41287829 + L2 LINE L2 3268 3313 0 672 303 54 8 chr9 100983617 100983858 -41287586 + L3 LINE CR1 1280 1531 -46 390 188 9 98 chr9 100984396 100984508 -41286936 - MER53 DNA DNA -86 103 2 204 246 153 8 chr9 100984692 100984810 -41286634 - MIR3 SINE MIR -50 158 24 248 279 209 0 chr9 100985237 100985323 -41286121 + MIR3 SINE MIR 104 207 -1 1958 134 0 0 chr9 100985341 100985632 -41285812 - AluSx SINE Alu -9 303 13 1326 201 121 40 chr9 100985855 100986186 -41285258 + L1MC4a LINE L1 5586 5961 -1847 276 53 0 0 chr9 100986186 100986224 -41285220 + (CA)n Simple_repeat Simple_repeat 2 39 0 1326 201 121 40 chr9 100986224 100986321 -41285123 + L1MC4a LINE L1 5961 6049 -1759 842 122 7 0 chr9 100986606 100986745 -41284699 + (CA)n Simple_repeat Simple_repeat 1 140 0 335 271 213 14 chr9 100986756 100986977 -41284467 - L1MD3 LINE L1 -10 7985 7721 231 146 0 0 chr9 100986995 100987036 -41284408 + (TA)n Simple_repeat Simple_repeat 1 41 0 708 251 87 52 chr9 100987043 100987470 -41283974 - L1MC4 LINE L1 -130 7912 7471 671 218 9 36 chr9 100987485 100987648 -41283796 + L1MC4a LINE L1 6614 6801 -984 249 175 0 0 chr9 100987640 100987680 -41283764 + L1MC4 LINE L1 6825 6864 -1178 * 2205 225 97 44 chr9 100987746 100987814 -41283630 + L1MC4 LINE L1 7095 7158 -884 1834 161 0 7 chr9 100987814 100988119 -41283325 + AluJo SINE Alu 1 303 -9 2205 225 97 44 chr9 100988119 100988951 -41282493 + L1MC4 LINE L1 7158 8042 0 2122 118 3 0 chr9 100989003 100989307 -41282137 + AluJb SINE Alu 2 306 -6 211 194 0 0 chr9 100990287 100990323 -41281121 + (TG)n Simple_repeat Simple_repeat 1 36 0 762 223 38 0 chr9 100990710 100990867 -41280577 + MIR SINE MIR 89 251 -11 247 275 29 51 chr9 100991103 100991241 -41280203 - L2 LINE L2 -208 3064 2930 223 210 48 0 chr9 100991328 100991390 -41280054 + MIR SINE MIR 66 130 -78 273 250 58 10 chr9 100991933 100992037 -41279407 - MIR SINE MIR -127 135 27 247 307 96 54 chr9 100992237 100992333 -41279111 - MER5A DNA MER1_type 0 189 82 510 220 37 0 chr9 100992333 100992442 -41279002 - MER81 DNA DNA -1 113 1 247 307 96 54 chr9 100992442 100992511 -41278933 - MER5A DNA MER1_type -107 82 17 * 291 207 35 0 chr9 100992455 100992513 -41278931 + MER5A DNA MER1_type 130 189 0 2171 108 0 0 chr9 100992608 100992905 -41278539 + AluY SINE Alu 1 297 -14 600 147 0 11 chr9 100992908 100993003 -41278441 + AluJb SINE Alu 131 224 -88 276 222 0 0 chr9 100993013 100993085 -41278359 + A-rich Low_complexity Low_complexity 1 72 0 192 302 167 0 chr9 100993086 100993182 -41278262 - MIR SINE MIR -17 245 134 189 301 18 56 chr9 100993884 100994082 -41277362 - MIR SINE MIR -70 192 2 272 189 14 0 chr9 100994173 100994247 -41277197 + (TGAA)n Simple_repeat Simple_repeat 1 75 0 190 239 248 8 chr9 100994431 100994548 -41276896 - L2 LINE L2 -13 3259 3115 201 290 90 0 chr9 100995768 100995868 -41275576 - MIR SINE MIR -89 173 65 290 305 34 8 chr9 100995898 100996016 -41275428 + MIR3 SINE MIR 82 202 -6 219 294 85 52 chr9 100997971 100998219 -41273225 - L3 LINE CR1 -134 1443 1188 211 389 14 36 chr9 100999347 100999486 -41271958 - L2 LINE L2 -16 3256 3121 1659 180 0 3 chr9 100999504 100999799 -41271645 - AluJo SINE Alu -18 294 1 389 149 35 0 chr9 100999816 100999903 -41271541 - L1MB3 LINE L1 0 6183 6094 704 246 35 26 chr9 100999941 101000173 -41271271 - MER106A DNA MER1_type 0 236 3 228 254 63 0 chr9 101000251 101000314 -41271130 - L2 LINE L2 -214 3058 2992 1383 245 150 23 chr9 101000396 101000877 -41270567 + MLT1F LTR MaLR 1 542 0 239 323 0 0 chr9 101001226 101001288 -41270156 - L2 LINE L2 -77 3195 3134 286 330 53 43 chr9 101001435 101001644 -41269800 - L2 LINE L2 -210 3062 2852 515 248 58 0 chr9 101001656 101001793 -41269651 - MIR SINE MIR -10 252 108 244 261 0 14 chr9 101001824 101001893 -41269551 - MIR SINE MIR -60 148 81 252 305 37 77 chr9 101002002 101002300 -41269144 + L2 LINE L2 2823 3108 -164 523 258 49 77 chr9 101002419 101002745 -41268699 + L2 LINE L2 2804 3120 -193 958 242 22 22 chr9 101002747 101002974 -41268470 + MIR SINE MIR 36 262 0 494 288 12 35 chr9 101002963 101003133 -41268311 + L2 LINE L2 3148 3313 0 * 1185 106 0 0 chr9 101003136 101003316 -41268128 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 4163 166 7 12 chr9 101004505 101005246 -41266198 + L1MB3 LINE L1 5447 6183 0 273 313 101 0 chr9 101005274 101005373 -41266071 - L2 LINE L2 -4 3268 3160 1095 252 111 49 chr9 101005688 101006120 -41265324 - LTR37B LTR ERV1 0 468 10 809 307 131 26 chr9 101006173 101006600 -41264844 + L2 LINE L2 2831 3302 -11 2017 109 17 0 chr9 101006601 101006895 -41264549 + AluSx SINE Alu 1 299 -13 210 295 9 29 chr9 101006922 101007027 -41264417 + CT-rich Low_complexity Low_complexity 5 107 0 203 267 129 75 chr9 101007076 101007316 -41264128 - L2 LINE L2 -1 3271 3019 32 26 0 0 chr9 101007491 101007530 -41263914 + AT_rich Low_complexity Low_complexity 1 39 0 354 183 0 0 chr9 101007563 101007634 -41263810 + GA-rich Low_complexity Low_complexity 4 74 0 1440 205 144 47 chr9 101008184 101008696 -41262748 + MLT1E3 LTR MaLR 44 624 0 324 252 215 0 chr9 101008966 101009073 -41262371 - MIR3 SINE MIR -48 160 31 226 129 0 0 chr9 101010410 101010441 -41261003 + MIR SINE MIR 223 253 -9 495 291 38 33 chr9 101010852 101011065 -41260379 - L3 LINE CR1 -10 1567 1354 3866 27 0 2 chr9 101011298 101011747 -41259697 + L1PA4 LINE L1 5705 6152 -3 429 257 50 0 chr9 101011760 101011834 -41259610 - MIR SINE MIR -30 232 163 1399 183 0 0 chr9 101011834 101012069 -41259375 + MER46A DNA MER2_type 2 236 0 429 257 50 0 chr9 101012069 101012134 -41259310 - MIR SINE MIR -99 163 86 1981 149 0 7 chr9 101012358 101012690 -41258754 - AluSx SINE Alu 0 335 6 1416 262 135 19 chr9 101012751 101013342 -41258102 - L1ME3A LINE L1 -219 5951 5292 279 336 104 8 chr9 101013366 101013500 -41257944 - L3 LINE CR1 -525 1052 906 453 161 25 59 chr9 101013557 101013675 -41257769 + HAL1b LINE L1 603 716 -632 1179 215 149 22 chr9 101013686 101014137 -41257307 + HAL1b LINE L1 785 1292 -56 261 237 26 13 chr9 101014235 101014311 -41257133 - L3 LINE CR1 -698 879 803 1173 172 16 52 chr9 101014529 101014779 -41256665 - MIR SINE MIR 0 262 22 628 272 41 24 chr9 101014785 101014954 -41256490 + MLT1J2 LTR MaLR 32 203 -247 501 320 92 18 chr9 101015140 101015412 -41256032 + LTR16B LTR ERVL 107 398 -66 1665 155 3 47 chr9 101015807 101016124 -41255320 - AluJo SINE Alu -9 303 1 513 314 67 79 chr9 101017014 101017444 -41254000 - L2 LINE L2 0 3272 2848 200 217 22 0 chr9 101018358 101018404 -41253040 + MIR3 SINE MIR 157 203 -5 714 312 0 59 chr9 101018445 101018698 -41252746 - MIR SINE MIR -6 256 19 905 180 0 11 chr9 101019062 101019240 -41252204 - AluJb SINE Alu 0 312 137 858 123 0 15 chr9 101019240 101019370 -41252074 - L1MB4 LINE L1 -39 6141 6014 186 43 0 0 chr9 101020578 101020601 -41250843 + (GGGGA)n Simple_repeat Simple_repeat 2 24 0 302 289 39 119 chr9 101020972 101021131 -41250313 - L2 LINE L2 0 3272 3149 2027 179 8 16 chr9 101021131 101021499 -41249945 - MLT1A1 LTR MaLR 0 365 1 302 289 39 119 chr9 101021499 101021650 -41249794 - L2 LINE L2 -123 3149 2987 203 239 174 28 chr9 101021883 101021992 -41249452 - MIR3 SINE MIR -75 133 9 577 291 109 0 chr9 101022180 101022410 -41249034 + MIR SINE MIR 5 259 -3 360 283 153 28 chr9 101023503 101023680 -41247764 - MIR SINE MIR -24 238 40 2038 121 0 10 chr9 101023904 101024218 -41247226 - AluSx SINE Alu -1 311 1 257 200 27 53 chr9 101026113 101026188 -41245256 + L1MC5 LINE L1 7836 7908 -53 188 257 110 18 chr9 101026405 101026514 -41244930 + L2 LINE L2 2175 2293 -1021 203 284 30 15 chr9 101027079 101027146 -41244298 + L2 LINE L2 2994 3061 -211 1673 189 0 0 chr9 101027330 101027659 -41243785 + AluJo SINE Alu 1 329 0 1714 149 16 41 chr9 101028089 101028287 -41243157 - AluJb SINE Alu -5 307 118 2089 88 42 0 chr9 101028287 101028571 -41242873 + AluSg SINE Alu 1 296 -14 1714 149 16 41 chr9 101028571 101028687 -41242757 - AluJb SINE Alu -194 118 1 338 171 43 29 chr9 101029006 101029076 -41242368 + MIR SINE MIR 81 151 -57 526 273 118 0 chr9 101030162 101030323 -41241121 + MER5A DNA MER1_type 3 182 -7 409 287 7 44 chr9 101030886 101031022 -41240422 - MIR3 SINE MIR -63 145 15 225 369 48 0 chr9 101031012 101031115 -41240329 - L2 LINE L2 -1 3271 3164 * 445 269 48 48 chr9 101031777 101031879 -41239565 + MIR SINE MIR 76 180 -82 5109 41 7 0 chr9 101031879 101032485 -41238959 - L1PA5 LINE L1 -5 6149 5540 445 269 48 48 chr9 101032485 101032568 -41238876 + MIR SINE MIR 179 261 -1 2266 97 7 0 chr9 101032569 101032877 -41238567 - AluSp SINE Alu -3 310 1 180 264 151 0 chr9 101036106 101036212 -41235232 + L2 LINE L2 2309 2430 -884 588 281 81 11 chr9 101036263 101036448 -41234996 + MIR SINE MIR 44 241 -21 1118 223 103 86 chr9 101036491 101036956 -41234488 + MLT1D LTR MaLR 8 505 0 881 153 7 0 chr9 101036967 101037117 -41234327 + AluSg/x SINE Alu 161 311 -1 351 0 0 0 chr9 101037555 101037594 -41233850 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 384 330 72 55 chr9 101038019 101038543 -41232901 + L3 LINE CR1 986 1518 -59 838 184 22 118 chr9 101039153 101039268 -41232176 + MLT1H LTR MaLR 1 85 -464 1589 189 0 3 chr9 101039268 101039559 -41231885 + AluJo SINE Alu 15 304 -8 838 184 22 118 chr9 101039559 101039671 -41231773 + MLT1H LTR MaLR 85 206 -343 265 319 42 42 chr9 101039753 101039969 -41231475 + HAL1 LINE L1 1554 1769 -738 309 265 169 48 chr9 101040201 101040340 -41231104 + L1MDa LINE L1 2421 2585 -3955 2024 119 0 3 chr9 101040340 101040635 -41230809 + AluSq SINE Alu 1 294 -19 309 265 169 48 chr9 101040635 101040661 -41230783 + L1MDa LINE L1 2585 2606 -3934 659 262 110 14 chr9 101042304 101042516 -41228928 + MIR SINE MIR 25 249 -13 345 263 12 0 chr9 101042514 101042594 -41228850 - MIR SINE MIR -109 153 73 * 2137 113 7 0 chr9 101042937 101043239 -41228205 + AluSx SINE Alu 1 304 -8 589 263 68 42 chr9 101044306 101044542 -41226902 + MIR SINE MIR 21 262 0 235 125 36 54 chr9 101044928 101044984 -41226460 + LTR13 LTR ERVK 661 715 -292 259 168 0 56 chr9 101044994 101045101 -41226343 + (TCTCTG)n Simple_repeat Simple_repeat 6 106 0 215 242 231 22 chr9 101045292 101045383 -41226061 + MIR3 SINE MIR 49 158 -50 230 239 0 0 chr9 101045872 101045918 -41225526 + L3b LINE CR1 1537 1582 -1 596 315 44 0 chr9 101046353 101046556 -41224888 + MIR SINE MIR 45 256 -6 339 25 0 0 chr9 101046684 101046724 -41224720 + (TC)n Simple_repeat Simple_repeat 1 40 0 335 259 89 42 chr9 101046737 101046996 -41224448 - L1MC4 LINE L1 -149 7893 7623 475 297 109 30 chr9 101047255 101047457 -41223987 + MIR SINE MIR 28 245 -17 301 261 54 11 chr9 101047640 101047732 -41223712 - MIR SINE MIR -112 150 55 249 33 0 0 chr9 101048587 101048617 -41222827 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 1622 161 0 4 chr9 101048621 101048888 -41222556 - AluJb SINE Alu -14 298 33 194 324 88 20 chr9 101048949 101049051 -41222393 - L2 LINE L2 -11 3261 3153 498 236 29 29 chr9 101049057 101049197 -41222247 + L2 LINE L2 2708 2847 -467 338 188 16 0 chr9 101049226 101049290 -41222154 - MLT1D LTR MaLR 0 505 441 1605 154 86 4 chr9 101049294 101049573 -41221871 + L1MC1 LINE L1 6014 6315 -18 1910 138 0 13 chr9 101049597 101049901 -41221543 + AluJb SINE Alu 1 300 -12 2055 169 47 42 chr9 101049910 101050361 -41221083 - MLT1D LTR MaLR -52 453 1 463 264 32 0 chr9 101050368 101050493 -41220951 - MIR SINE MIR -113 149 21 302 250 28 0 chr9 101051287 101051359 -41220085 + MIR SINE MIR 63 136 -72 409 260 77 24 chr9 101052247 101052416 -41219028 - MIR SINE MIR -70 192 15 1827 152 3 27 chr9 101052556 101052886 -41218558 + L1MB8 LINE L1 5852 6173 -5 615 228 109 27 chr9 101052938 101053163 -41218281 + MIR SINE MIR 22 262 0 256 307 26 46 chr9 101054001 101054154 -41217290 + L3 LINE CR1 1368 1517 -60 188 163 163 0 chr9 101054229 101054272 -41217172 - L3b LINE CR1 -4 1579 1530 * 496 258 16 8 chr9 101054238 101054362 -41217082 - MIR3 SINE MIR -24 184 60 692 174 179 30 chr9 101056272 101056473 -41214971 + ORSL DNA AcHobo 2 232 -43 296 286 41 0 chr9 101056519 101056617 -41214827 + MLT1L LTR MaLR 503 604 -11 277 220 119 0 chr9 101056728 101056787 -41214657 + MIR SINE MIR 105 170 -92 1005 189 0 37 chr9 101057280 101057497 -41213947 - MER3 DNA MER1_type 0 209 1 499 293 54 12 chr9 101057685 101057852 -41213592 + MIR SINE MIR 23 196 -66 525 206 0 71 chr9 101057855 101057981 -41213463 - L2 LINE L2 -4 3309 3193 746 168 129 13 chr9 101058671 101058826 -41212618 + MIR SINE MIR 78 250 -12 1036 213 148 21 chr9 101058846 101059320 -41212124 + MLT1G LTR MaLR 1 590 0 219 303 15 0 chr9 101059330 101059396 -41212048 - L2 LINE L2 -1 3271 3205 626 213 89 55 chr9 101059442 101059644 -41211800 + MER63A DNA MER1_type 2 210 0 2168 96 3 13 chr9 101059795 101060109 -41211335 + AluSq SINE Alu 1 311 -2 651 348 41 12 chr9 101060145 101060484 -41210960 - LTR16B LTR ERVL -115 349 1 1696 196 89 33 chr9 101060752 101061196 -41210248 + MLT1C LTR MaLR 1 359 -5 309 237 268 40 chr9 101061310 101061538 -41209906 - L3 LINE CR1 -110 1467 1188 266 221 35 47 chr9 101062317 101062403 -41209041 - MER5A DNA MER1_type -2 187 103 1898 125 4 4 chr9 101062936 101063217 -41208227 - AluSx SINE Alu 0 312 32 191 373 15 0 chr9 101063357 101063424 -41208020 - MER5A DNA MER1_type -51 138 71 486 289 66 15 chr9 101063457 101063654 -41207790 - L3 LINE CR1 -103 1474 1268 660 223 71 92 chr9 101063825 101063853 -41207591 - MIR SINE MIR -2 260 233 1962 191 54 48 chr9 101063853 101064355 -41207089 + MLT1D LTR MaLR 1 505 0 660 223 71 92 chr9 101064355 101064564 -41206880 - MIR SINE MIR -29 233 28 367 312 39 7 chr9 101064738 101064892 -41206552 - MIR3 SINE MIR -1 207 49 4920 76 30 0 chr9 101064907 101065548 -41205896 + PABL_A LTR ERV1 1 660 0 297 0 0 0 chr9 101066578 101066611 -41204833 + (TA)n Simple_repeat Simple_repeat 1 33 0 243 277 149 11 chr9 101066652 101066746 -41204698 + L2 LINE L2 3203 3309 -4 182 344 16 0 chr9 101066893 101066957 -41204487 + L2 LINE L2 3000 3064 -208 265 330 34 0 chr9 101067350 101067438 -41204006 + MIR SINE MIR 75 165 -97 348 226 0 164 chr9 101067440 101067586 -41203858 - MER5A DNA MER1_type 0 189 68 2212 87 0 26 chr9 101067594 101067906 -41203538 - AluSx SINE Alu -8 304 1 210 325 195 16 chr9 101068191 101068314 -41203130 + L2 LINE L2 3123 3267 -5 485 271 125 46 chr9 101069060 101069300 -41202144 - MER112 DNA MER1_type 0 260 2 590 278 116 0 chr9 101069457 101069630 -41201814 - LTR16C LTR ERVL 0 491 299 782 311 93 9 chr9 101070071 101070512 -41200932 + MLT1K LTR MaLR 25 567 -21 2897 159 14 29 chr9 101070929 101071025 -41200419 + MER70B LTR ERVL 1 97 -481 1893 147 33 0 chr9 101071025 101071325 -41200119 + AluSx SINE Alu 1 310 -2 2897 159 14 29 chr9 101071325 101071711 -41199733 + MER70B LTR ERVL 97 476 -102 1101 241 55 0 chr9 101072276 101072513 -41198931 - MIR SINE MIR -10 252 3 3407 164 13 4 chr9 101072518 101073068 -41198376 + MER68 LTR ERV1 1 555 -7 189 143 0 57 chr9 101073411 101073446 -41197998 - MIR SINE MIR -146 62 30 325 310 26 12 chr9 101073869 101074006 -41197438 + MIR SINE MIR 4 140 -68 340 329 120 58 chr9 101074296 101074374 -41197070 - L2 LINE L2 -471 2843 2771 3893 39 7 0 chr9 101074374 101074836 -41196608 + L1PA7 LINE L1 5682 6146 -8 340 329 120 58 chr9 101074836 101075207 -41196237 - L2 LINE L2 -543 2771 2366 225 135 0 96 chr9 101075596 101075648 -41195796 + L1PBb LINE L1 237 283 -5921 1135 229 119 81 chr9 101075787 101076233 -41195211 + Charlie8 DNA MER1_type 1 463 -1954 1735 185 27 21 chr9 101076495 101076868 -41194576 + THE1C LTR MaLR 1 375 0 302 332 101 57 chr9 101076871 101077053 -41194391 - MIR SINE MIR -7 255 45 539 218 77 41 chr9 101077063 101077233 -41194211 - MER5B DNA MER1_type -2 176 1 345 24 0 0 chr9 101077236 101077278 -41194166 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 240 206 0 44 chr9 101078241 101078309 -41193135 - MER58 DNA MER1_type 0 2420 2356 2070 100 4 0 chr9 101078413 101078692 -41192752 - AluSx SINE Alu -32 280 1 320 255 205 23 chr9 101078810 101079073 -41192371 - L1ME4a LINE L1 -105 6016 5706 583 278 60 54 chr9 101079078 101079400 -41192044 - L1ME4a LINE L1 -461 5660 5348 2407 166 63 21 chr9 101079419 101079781 -41191663 - MLT1D LTR MaLR -4 501 113 1977 128 3 10 chr9 101079781 101080079 -41191365 - AluSx SINE Alu -16 296 1 2407 166 63 21 chr9 101080079 101080193 -41191251 - MLT1D LTR MaLR -392 113 5 2142 99 0 0 chr9 101080290 101080572 -41190872 - AluSx SINE Alu -30 282 1 844 238 140 98 chr9 101080603 101081011 -41190433 + LTR16A LTR ERVL 20 444 -6 1261 305 38 11 chr9 101081193 101081639 -41189805 + ERVL LTR ERVL 223 680 -4316 778 286 88 25 chr9 101081743 101082107 -41189337 + ERVL LTR ERVL 820 1206 -3790 198 0 0 0 chr9 101082122 101082144 -41189300 + (GGGTG)n Simple_repeat Simple_repeat 5 26 0 3601 293 49 33 chr9 101082158 101083688 -41187756 + ERVL LTR ERVL 1391 2891 -2105 855 113 0 8 chr9 101083716 101083840 -41187604 + FLAM_C SINE Alu 1 123 -20 1357 218 3 19 chr9 101083857 101084135 -41187309 + AluJb SINE Alu 1 275 -37 294 50 0 0 chr9 101084135 101084175 -41187269 + (TC)n Simple_repeat Simple_repeat 1 40 0 1357 218 3 19 chr9 101084175 101084203 -41187241 + AluJb SINE Alu 275 302 -10 1204 290 60 4 chr9 101084205 101084602 -41186842 + ERVL LTR ERVL 2921 3377 -1902 1318 315 32 40 chr9 101084874 101085506 -41185938 + ERVL LTR ERVL 4269 4895 -869 693 229 143 0 chr9 101085515 101085628 -41185816 + MER3 DNA MER1_type 10 105 -104 636 194 73 0 chr9 101085628 101085752 -41185692 - FLAM_A SINE Alu 0 133 1 693 229 143 0 chr9 101085752 101085813 -41185631 + MER3 DNA MER1_type 105 209 0 256 260 0 0 chr9 101085770 101085820 -41185624 - MER3 DNA MER1_type -119 90 41 * 443 325 60 60 chr9 101085832 101086250 -41185194 + ERVL LTR ERVL 4906 5323 -441 1092 255 95 54 chr9 101086450 101086861 -41184583 + LTR16A LTR ERVL 23 445 -5 976 258 90 46 chr9 101086896 101087332 -41184112 + LTR16A LTR ERVL 1 450 0 4586 155 28 31 chr9 101087574 101087964 -41183480 - L1MB3 LINE L1 -2 6181 5792 315 0 0 0 chr9 101087964 101087999 -41183445 + (TG)n Simple_repeat Simple_repeat 2 36 0 4586 155 28 31 chr9 101087999 101088487 -41182957 - L1MB3 LINE L1 -391 5792 5305 365 396 35 5 chr9 101088500 101088697 -41182747 - L1M4 LINE L1 -1200 4946 4744 272 278 0 0 chr9 101088955 101089009 -41182435 - L2 LINE L2 -258 3055 3002 666 131 44 7 chr9 101089223 101089360 -41182084 - L1MB8 LINE L1 -6 6172 6031 3995 167 27 9 chr9 101089360 101090102 -41181342 + L1MB3 LINE L1 5428 6183 0 3239 157 37 29 chr9 101090191 101090814 -41180630 - L1MB7 LINE L1 -147 6037 5410 301 311 209 18 chr9 101090818 101091095 -41180349 - L2 LINE L2 -569 2745 2416 2183 141 14 3 chr9 101091122 101091477 -41179967 - L1MB2 LINE L1 -2 6169 5811 792 328 37 29 chr9 101091633 101092014 -41179430 - HsTC2 DNA Tc2 -1029 869 486 309 203 0 47 chr9 101092228 101092292 -41179152 - HsTC2 DNA Tc2 -1827 71 11 940 185 0 0 chr9 101094683 101094845 -41176599 - FRAM SINE Alu -14 162 1 322 333 35 0 chr9 101095078 101095192 -41176252 + MIR SINE MIR 67 184 -78 213 319 0 0 chr9 101096684 101096756 -41174688 - MIR SINE MIR -111 151 80 349 327 139 36 chr9 101096888 101097197 -41174247 + L2 LINE L2 2932 3272 0 425 284 116 18 chr9 101098557 101098782 -41172662 + MIR SINE MIR 5 251 -11 278 254 15 15 chr9 101099650 101099717 -41171727 - MIR3 SINE MIR -41 167 101 600 266 131 25 chr9 101100033 101100308 -41171136 + MLT1J2 LTR MaLR 64 367 -83 6102 154 4 23 chr9 101101470 101103484 -41167960 + L1PB1 LINE L1 4176 6150 -1 249 33 0 0 chr9 101103489 101103519 -41167925 + (CAA)n Simple_repeat Simple_repeat 2 31 0 699 135 18 0 chr9 101103532 101103643 -41167801 + FLAM_A SINE Alu 1 113 -29 592 264 28 14 chr9 101103643 101103787 -41167657 + MIR SINE MIR 43 188 -74 22 0 0 0 chr9 101103862 101103884 -41167560 + AT_rich Low_complexity Low_complexity 1 22 0 2182 30 19 4 chr9 101103964 101104232 -41167212 - AluY SINE Alu -14 297 26 24 0 0 0 chr9 101104235 101104259 -41167185 + AT_rich Low_complexity Low_complexity 1 24 0 205 316 167 9 chr9 101104566 101104680 -41166764 + MIR SINE MIR 20 151 -57 535 245 120 86 chr9 101104946 101105400 -41166044 + L1ME LINE L1 5311 5657 -464 731 189 0 15 chr9 101105516 101105648 -41165796 + FLAM_A SINE Alu 4 133 0 391 287 176 11 chr9 101106107 101106295 -41165149 + MER112 DNA MER1_type 36 254 -6 449 216 48 64 chr9 101106950 101107075 -41164369 + MIR3 SINE MIR 43 165 -43 992 256 38 0 chr9 101107137 101107348 -41164096 + MIR SINE MIR 1 219 -43 296 178 56 93 chr9 101108084 101108191 -41163253 - MIR SINE MIR -50 212 110 298 267 35 69 chr9 101109877 101109993 -41161451 - MIR SINE MIR -16 246 135 700 289 80 42 chr9 101110863 101110918 -41160526 + MLT1J LTR MaLR 22 73 -373 2345 179 76 15 chr9 101110918 101111392 -41160052 + MLT1D LTR MaLR 1 503 -2 700 289 80 42 chr9 101111392 101111798 -41159646 + MLT1J LTR MaLR 73 425 -21 704 263 163 47 chr9 101112542 101113102 -41158342 + L2 LINE L2 2688 3312 -1 228 196 59 108 chr9 101113922 101114024 -41157420 + L1 LINE L1 3906 4002 -2144 2258 105 0 13 chr9 101114847 101115153 -41156291 - AluSx SINE Alu -10 302 1 458 229 102 38 chr9 101115166 101115323 -41156121 + L1ME4a LINE L1 5262 5428 -2380 222 258 0 0 chr9 101115498 101115564 -41155880 + MIR SINE MIR 50 115 -93 2082 117 0 31 chr9 101115586 101115877 -41155567 - AluSx SINE Alu -30 282 1 391 246 200 0 chr9 101115877 101116007 -41155437 + MIR SINE MIR 96 251 -11 244 238 111 102 chr9 101116017 101116202 -41155242 + L1ME4a LINE L1 5584 5773 -348 2676 48 3 0 chr9 101116202 101116512 -41154932 + AluY SINE Alu 1 311 0 244 238 111 102 chr9 101116512 101116561 -41154883 + L1ME4a LINE L1 5773 5820 -301 234 0 0 0 chr9 101116644 101116670 -41154774 + (A)n Simple_repeat Simple_repeat 1 26 0 421 221 69 0 chr9 101116739 101116870 -41154574 + L1ME4a LINE L1 5981 6120 -1 2071 161 33 31 chr9 101117406 101117948 -41153496 + MLT2A2 LTR ERVL 1 544 -10 237 248 86 9 chr9 101118012 101118117 -41153327 + L2 LINE L2 3137 3249 -64 1649 197 20 7 chr9 101118158 101118463 -41152981 - AluJo SINE Alu -3 309 1 1534 193 44 57 chr9 101118463 101118863 -41152581 + MER31B LTR ERV1 18 414 -52 2079 128 3 0 chr9 101118863 101119170 -41152274 - AluSx SINE Alu 0 308 1 1534 193 44 57 chr9 101119170 101119223 -41152221 + MER31B LTR ERV1 414 466 0 1893 175 30 59 chr9 101119561 101120035 -41151409 - MER31B LTR ERV1 0 466 7 250 239 136 11 chr9 101120237 101120325 -41151119 + L2 LINE L2 3161 3259 -13 736 314 99 67 chr9 101120557 101121203 -41150241 - L3 LINE CR1 -635 942 276 424 171 12 12 chr9 101121552 101121634 -41149810 - MIR SINE MIR -110 152 71 212 231 0 0 chr9 101123262 101123301 -41148143 + L2 LINE L2 3262 3300 -13 466 301 52 35 chr9 101124256 101124429 -41147015 - MIR SINE MIR -78 184 9 342 230 86 79 chr9 101124705 101124844 -41146600 - L2 LINE L2 -1 3312 3173 271 324 69 0 chr9 101125165 101125267 -41146177 - MIR SINE MIR -43 219 111 662 290 149 41 chr9 101125417 101125949 -41145495 - L2 LINE L2 -1 3312 2725 623 249 122 46 chr9 101126565 101126706 -41144738 + MIR SINE MIR 5 164 -98 2511 51 0 0 chr9 101126706 101127000 -41144444 + AluY SINE Alu 2 295 -16 623 249 122 46 chr9 101127000 101127108 -41144336 + MIR SINE MIR 164 262 0 2520 81 0 0 chr9 101127996 101128293 -41143151 - AluSg SINE Alu -13 297 1 463 217 23 31 chr9 101129028 101129157 -41142287 - L2 LINE L2 0 3272 3145 338 250 112 35 chr9 101129601 101129717 -41141727 + L2 LINE L2 3117 3241 -31 582 249 88 6 chr9 101129979 101130160 -41141284 + LTR16B LTR ERVL 267 462 -2 796 246 136 35 chr9 101130186 101130532 -41140912 + MLT1J2 LTR MaLR 68 448 -2 1654 257 101 18 chr9 101132010 101132505 -41138939 + MLT1K LTR MaLR 53 588 0 230 326 47 0 chr9 101132505 101132591 -41138853 - L2 LINE L2 -31 3282 3193 1890 164 3 16 chr9 101132599 101132910 -41138534 - AluJo SINE Alu -5 307 1 61 0 0 0 chr9 101132914 101132975 -41138469 + AT_rich Low_complexity Low_complexity 1 61 0 419 129 0 0 chr9 101133075 101133145 -41138299 - L1MB8 LINE L1 -50 6128 6059 786 257 137 11 chr9 101133518 101133884 -41137560 + L1ME4a LINE L1 5709 6120 -1 682 144 8 42 chr9 101133967 101134085 -41137359 + FRAM SINE Alu 49 162 -14 2383 93 6 0 chr9 101134911 101135222 -41136222 + AluSp SINE Alu 1 313 0 189 167 0 28 chr9 101135273 101135309 -41136135 - MIR SINE MIR -11 251 217 194 353 10 29 chr9 101135405 101135507 -41135937 - MIR SINE MIR -142 120 21 41 48 0 0 chr9 101137687 101137749 -41133695 + GC_rich Low_complexity Low_complexity 1 62 0 495 262 94 34 chr9 101138029 101138178 -41133266 + MIR SINE MIR 79 236 -26 216 263 35 0 chr9 101138432 101138489 -41132955 + MIR SINE MIR 92 150 -58 332 347 50 30 chr9 101138952 101139151 -41132293 + L1ME LINE L1 5525 5727 -394 475 262 48 8 chr9 101139546 101139672 -41131772 - MIR SINE MIR -106 156 26 292 279 73 15 chr9 101139707 101139843 -41131601 + L3 LINE CR1 1305 1448 -129 620 279 44 35 chr9 101140845 101141071 -41130373 - MIR SINE MIR -30 232 5 210 243 201 21 chr9 101141338 101141482 -41129962 + MIR SINE MIR 31 200 -62 231 195 0 161 chr9 101142478 101142565 -41128879 + L2 LINE L2 3200 3272 0 1123 246 132 26 chr9 101142733 101143159 -41128285 + MLT1J LTR MaLR 4 474 -37 3318 139 28 32 chr9 101144374 101144976 -41126468 - L1MB7 LINE L1 -9 6175 5576 1457 188 7 48 chr9 101146176 101146468 -41124976 + AluJo SINE Alu 1 280 -32 261 0 0 0 chr9 101146468 101146497 -41124947 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 460 246 103 51 chr9 101146575 101146750 -41124694 - L2 LINE L2 -244 3069 2886 326 78 0 20 chr9 101146788 101146839 -41124605 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 723 212 38 33 chr9 101146969 101147153 -41124291 - MIR SINE MIR -55 207 23 2419 165 92 12 chr9 101147396 101147906 -41123538 + MER63C DNA MER1_type 1 551 -379 757 115 0 10 chr9 101147907 101148011 -41123433 + AluJb SINE Alu 193 295 -17 1270 229 47 12 chr9 101148012 101148353 -41123091 + MER63C DNA MER1_type 545 897 -33 2438 64 0 7 chr9 101148737 101149032 -41122412 + AluY SINE Alu 1 293 -18 952 251 143 73 chr9 101149963 101150500 -41120944 + MLT1K LTR MaLR 14 588 0 324 0 0 0 chr9 101151208 101151244 -41120200 + (TG)n Simple_repeat Simple_repeat 2 37 0 336 24 0 0 chr9 101151244 101151285 -41120159 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 2223 84 0 4 chr9 101151285 101151560 -41119884 - AluSx SINE Alu -38 274 1 259 226 151 11 chr9 101151681 101151774 -41119670 + MIR3 SINE MIR 55 160 -48 294 274 22 117 chr9 101151774 101151953 -41119491 + MER5B DNA MER1_type 1 162 -16 201 304 36 0 chr9 101152463 101152519 -41118925 - MIR3 SINE MIR -7 201 144 789 254 67 23 chr9 101153341 101153565 -41117879 + MIR SINE MIR 13 246 -11 266 144 38 159 chr9 101153615 101153747 -41117697 + L1MC5 LINE L1 7404 7519 -442 2506 156 50 17 chr9 101153749 101154231 -41117213 + L1MB3 LINE L1 5680 6177 -6 234 62 0 0 chr9 101154232 101154264 -41117180 + (CA)n Simple_repeat Simple_repeat 2 33 0 2188 91 70 0 chr9 101154267 101154553 -41116891 - AluSx SINE Alu -6 306 1 1615 186 25 14 chr9 101154580 101154859 -41116585 - AluJo SINE Alu -30 282 1 954 193 168 30 chr9 101154871 101155234 -41116210 + L1MC5 LINE L1 7505 7917 -44 369 244 103 9 chr9 101155526 101155655 -41115789 - MIR SINE MIR -62 146 10 540 281 27 0 chr9 101155978 101156124 -41115320 - MER5B DNA MER1_type 0 178 29 1855 148 10 17 chr9 101156135 101156425 -41115019 - AluJo SINE Alu -24 288 1 330 98 0 0 chr9 101156846 101156897 -41114547 + (CA)n Simple_repeat Simple_repeat 1 51 0 547 316 27 13 chr9 101156975 101157209 -41114235 - MIR SINE MIR -13 249 10 350 309 67 30 chr9 101157541 101157706 -41113738 - MIR SINE MIR -48 214 44 198 103 0 0 chr9 101158117 101158146 -41113298 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1533 258 91 15 chr9 101158770 101159477 -41111967 - L2 LINE L2 0 3313 2550 610 77 0 0 chr9 101160122 101160200 -41111244 - MADE1 DNA Mariner -2 78 1 210 136 0 0 chr9 101160236 101160280 -41111164 + (TG)n Simple_repeat Simple_repeat 1 44 0 422 320 117 24 chr9 101160587 101160793 -41110651 - MIR SINE MIR 0 262 38 2210 88 0 0 chr9 101161064 101161359 -41110085 + AluSg SINE Alu 1 295 -15 706 251 25 49 chr9 101161727 101161930 -41109514 + MIR SINE MIR 32 229 -33 329 221 13 13 chr9 101161888 101161965 -41109479 - MIR SINE MIR -1 261 185 * 194 301 27 14 chr9 101161966 101162039 -41109405 + MIR SINE MIR 189 262 0 933 321 99 61 chr9 101162289 101163136 -41108308 - L3 LINE CR1 -439 1138 260 1350 179 86 10 chr9 101163697 101163988 -41107456 - L1ME3A LINE L1 -59 6111 5799 378 370 76 19 chr9 101164201 101164635 -41106809 + L2 LINE L2 2638 3096 -176 541 173 173 27 chr9 101164689 101164838 -41106606 + MER104 DNA Tc2 1 180 0 1777 182 35 43 chr9 101165612 101165932 -41105512 - MLT1A1 LTR MaLR 0 365 47 2101 117 0 3 chr9 101165932 101166232 -41105212 - AluSx SINE Alu -13 299 1 1777 182 35 43 chr9 101166232 101166279 -41105165 - MLT1A1 LTR MaLR -318 47 1 216 220 20 0 chr9 101167031 101167081 -41104363 + T-rich Low_complexity Low_complexity 3 53 0 2015 127 0 0 chr9 101167341 101167633 -41103811 + AluSx SINE Alu 5 296 -16 311 306 75 15 chr9 101167748 101167882 -41103562 - MIR SINE MIR -55 207 66 215 263 88 0 chr9 101168392 101168449 -41102995 - MIR SINE MIR 0 262 201 200 179 154 77 chr9 101168446 101168524 -41102920 - MIR SINE MIR -178 84 1 * 227 306 124 61 chr9 101168929 101169308 -41102136 + L2 LINE L2 2860 3262 -10 429 193 63 19 chr9 101169473 101169592 -41101852 - MLT1G1 LTR MaLR 0 595 420 183 264 298 0 chr9 101169657 101169754 -41101690 + L2 LINE L2 3096 3228 -44 291 321 87 56 chr9 101169754 101169950 -41101494 + MIR3 SINE MIR 2 203 -5 193 299 58 11 chr9 101170032 101170119 -41101325 + L2 LINE L2 2870 2960 -312 251 308 29 10 chr9 101170401 101170505 -41100939 - L1MC/D LINE L1 -2091 5717 5612 674 251 194 9 chr9 101170505 101170824 -41100620 - LTR33A LTR ERVL 0 523 146 266 298 69 12 chr9 101171403 101171570 -41099874 - L1MC/D LINE L1 -679 5487 5314 196 274 0 48 chr9 101172296 101172358 -41099086 + MIR SINE MIR 85 143 -65 212 171 49 0 chr9 101172426 101172467 -41098977 - L2 LINE L2 -9 3304 3262 * 537 204 96 66 chr9 101172434 101172601 -41098843 - MIR SINE MIR -13 249 78 289 321 9 9 chr9 101173417 101173523 -41097921 - MIR3 SINE MIR -2 206 101 375 331 83 24 chr9 101173941 101174110 -41097334 + MIR3 SINE MIR 7 185 -23 275 260 56 48 chr9 101174637 101174795 -41096649 - MIR SINE MIR -41 167 36 465 212 106 9 chr9 101174908 101175021 -41096423 + MIR SINE MIR 85 208 -54 205 293 50 69 chr9 101175021 101175199 -41096245 + MIR SINE MIR 18 187 -75 211 39 0 0 chr9 101175272 101175298 -41096146 - MER5C DNA MER1_type -295 29 4 193 176 29 0 chr9 101176026 101176060 -41095384 - L2 LINE L2 -29 3243 3209 * 204 229 180 16 chr9 101176031 101176092 -41095352 - MIR SINE MIR -29 233 163 208 261 62 0 chr9 101176108 101176173 -41095271 + L2 LINE L2 3188 3256 -57 451 264 14 21 chr9 101176384 101176528 -41094916 - LTR16A LTR ERVL 0 450 308 2810 165 69 7 chr9 101177135 101177687 -41093757 - L1MB5 LINE L1 -6 6168 5583 225 226 0 32 chr9 101228182 101228244 -41043200 + L1ME4a LINE L1 5988 6047 -74 218 245 53 75 chr9 101229157 101229251 -41042193 - MIR SINE MIR -106 156 65 287 318 24 0 chr9 101229647 101229732 -41041712 + MIR SINE MIR 61 147 -115 186 279 44 44 chr9 101229806 101229874 -41041570 + MIR3 SINE MIR 109 176 -32 254 182 26 26 chr9 101230099 101230176 -41041268 + C-rich Low_complexity Low_complexity 4 80 0 29 98 0 0 chr9 101230186 101230247 -41041197 + GC_rich Low_complexity Low_complexity 1 61 0 467 189 0 9 chr9 101230644 101230662 -41040782 + CT-rich Low_complexity Low_complexity 4 21 -92 2040 149 7 79 chr9 101230662 101231091 -41040353 - L1PA16 LINE L1 -4 6162 5765 467 189 0 9 chr9 101231091 101231183 -41040261 + CT-rich Low_complexity Low_complexity 21 113 0 1599 171 4 7 chr9 101231186 101231467 -41039977 - AluJb SINE Alu -32 280 1 3048 91 48 2 chr9 101231468 101231908 -41039536 - L1PA16 LINE L1 -381 5785 5326 * 3176 189 47 22 chr9 101231907 101232633 -41038811 + L1 LINE L1 3672 4415 -1731 872 166 21 52 chr9 101232646 101232839 -41038605 + MER5A DNA MER1_type 1 187 -2 416 268 26 17 chr9 101232885 101233020 -41038424 - MIR SINE MIR -69 139 19 301 164 49 16 chr9 101233019 101233080 -41038364 - L2 LINE L2 -1 3312 3250 * 384 181 26 78 chr9 101233080 101233196 -41038248 - LTR67 LTR ERVL -59 498 389 405 296 207 17 chr9 101233232 101233411 -41038033 - LTR67 LTR ERVL -339 218 6 1700 139 3 27 chr9 101233529 101233830 -41037614 - AluSx SINE Alu -18 294 1 740 246 53 6 chr9 101233830 101234001 -41037443 + MLT1K LTR MaLR 249 427 -161 1972 111 0 24 chr9 101234242 101234539 -41036905 + AluSx SINE Alu 1 290 -22 1214 176 0 18 chr9 101234611 101234838 -41036606 - AluSg/x SINE Alu -5 305 83 1148 178 18 9 chr9 101234981 101235206 -41036238 + AluSx SINE Alu 50 276 -36 234 0 0 0 chr9 101235207 101235233 -41036211 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 291 170 0 0 chr9 101235242 101235295 -41036149 - L1ME LINE L1 -373 5748 5696 1713 248 68 20 chr9 101235300 101235796 -41035648 - LTR33 LTR ERVL 0 521 2 532 218 152 36 chr9 101235798 101235963 -41035481 + MER5A DNA MER1_type 4 187 -2 376 282 112 18 chr9 101236052 101236090 -41035354 - LTR16B LTR ERVL 0 464 431 189 0 0 0 chr9 101236090 101236111 -41035333 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 376 282 112 18 chr9 101236111 101236150 -41035294 - LTR16B LTR ERVL -33 431 397 2026 89 4 11 chr9 101236150 101236431 -41035013 + AluSx SINE Alu 24 302 -10 376 282 112 18 chr9 101236431 101236701 -41034743 - LTR16B LTR ERVL -67 397 43 854 217 0 28 chr9 101236788 101236968 -41034476 - FAM SINE Alu 0 175 1 227 273 0 0 chr9 101236968 101237012 -41034432 - L2 LINE L2 -10 3262 3219 447 248 28 0 chr9 101237399 101237508 -41033936 + L2 LINE L2 3192 3303 -10 1403 272 66 45 chr9 101237508 101238273 -41033171 - L1MC4a LINE L1 -56 6065 5285 194 31 0 62 chr9 101238448 101238480 -41032964 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 324 314 20 0 chr9 101238502 101238604 -41032840 - L1MC4a LINE L1 -1140 5006 4903 289 276 0 0 chr9 101238841 101238899 -41032545 - MER5A DNA MER1_type -119 70 13 353 167 143 0 chr9 101238910 101238994 -41032450 + LTR33 LTR ERVL 2 97 -424 632 262 33 16 chr9 101238995 101239178 -41032266 - MIR SINE MIR -75 187 2 532 321 114 13 chr9 101239205 101239442 -41032002 + MIR SINE MIR 1 261 -1 190 318 156 23 chr9 101240193 101240366 -41031078 + L2 LINE L2 3000 3195 -118 1272 201 56 7 chr9 101240458 101240727 -41030717 - AluJo SINE Alu -30 282 1 260 290 10 70 chr9 101240865 101240965 -41030479 + MIR SINE MIR 104 197 -65 216 256 88 51 chr9 101241001 101241138 -41030306 - MIR SINE MIR -6 256 115 225 200 0 43 chr9 101241154 101241224 -41030220 + (CGGGG)n Simple_repeat Simple_repeat 3 69 0 33 66 0 0 chr9 101241422 101241483 -41029961 + GC_rich Low_complexity Low_complexity 1 61 0 186 279 44 44 chr9 101242477 101242545 -41028899 - MIR3 SINE MIR -32 176 109 287 318 24 0 chr9 101242619 101242704 -41028740 - MIR SINE MIR -115 147 61 334 298 0 39 chr9 101243079 101243183 -41028261 + MIR SINE MIR 57 156 -106 605 236 27 0 chr9 101244012 101244160 -41027284 - L1ME4a LINE L1 -2 6119 5968 25 0 0 0 chr9 101244479 101244504 -41026940 + AT_rich Low_complexity Low_complexity 1 25 0 359 261 219 17 chr9 101244627 101244746 -41026698 + MER5B DNA MER1_type 36 178 0 2259 99 0 0 chr9 101245281 101245583 -41025861 - AluSx SINE Alu -10 302 1 604 315 83 64 chr9 101245799 101245909 -41025535 - L1MEc LINE L1 -3992 2404 2298 2037 123 0 3 chr9 101245909 101246202 -41025242 + AluSx SINE Alu 1 292 -20 604 315 83 64 chr9 101246202 101246573 -41024871 - L1MEc LINE L1 -4098 2298 1914 390 250 95 58 chr9 101246581 101246944 -41024500 - L1MEc LINE L1 -861 1715 1534 309 250 38 12 chr9 101246946 101247026 -41024418 - L1MEc LINE L1 -5252 953 872 308 253 13 97 chr9 101247055 101247102 -41024342 - L1MEc LINE L1 -5977 228 179 2239 91 0 7 chr9 101247102 101247400 -41024044 - AluSq SINE Alu -17 296 1 308 253 13 97 chr9 101247400 101247506 -41023938 - L1MEc LINE L1 -6026 179 88 543 236 0 61 chr9 101247539 101247704 -41023740 - MLT1K LTR MaLR -3 585 431 244 208 0 0 chr9 101247752 101247800 -41023644 + (TG)n Simple_repeat Simple_repeat 2 49 0 369 265 0 34 chr9 101247800 101247917 -41023527 - MLT1K LTR MaLR -463 125 13 1836 107 0 4 chr9 101248027 101248288 -41023156 + AluSq SINE Alu 1 260 -53 399 303 8 17 chr9 101248376 101248495 -41022949 + MIR SINE MIR 143 260 -2 223 260 146 21 chr9 101248470 101248566 -41022878 - L2 LINE L2 -7 3265 3158 * 1832 146 130 3 chr9 101248782 101249104 -41022340 + MER47A DNA MER2_type 1 363 -3 668 246 83 24 chr9 101249274 101249562 -41021882 - L1ME4a LINE L1 -1 6120 5816 296 304 25 44 chr9 101249687 101249891 -41021553 - L1ME4a LINE L1 -357 5764 5565 186 43 0 0 chr9 101249982 101250005 -41021439 + (A)n Simple_repeat Simple_repeat 1 23 0 1857 140 0 26 chr9 101250252 101250418 -41021026 - AluJb SINE Alu -13 299 143 2322 68 0 13 chr9 101250418 101250726 -41020718 - AluY SINE Alu -7 304 1 1857 140 0 26 chr9 101250726 101250866 -41020578 - AluJb SINE Alu -169 143 1 2301 90 6 0 chr9 101251051 101251362 -41020082 - AluSq SINE Alu 0 313 1 1108 260 76 54 chr9 101251521 101251829 -41019615 - L1MC4 LINE L1 -1 8041 7714 2093 98 0 7 chr9 101251829 101252125 -41019319 - AluSx SINE Alu -18 294 1 1108 260 76 54 chr9 101252125 101252369 -41019075 - L1MC4 LINE L1 -328 7714 7477 2023 198 8 40 chr9 101252370 101252769 -41018675 - MLT1F LTR MaLR -29 513 128 570 172 11 0 chr9 101252789 101252882 -41018562 + MLT1F1 LTR MaLR 1 94 -473 211 280 125 66 chr9 101253397 101253575 -41017869 + MIR SINE MIR 12 195 -67 395 189 72 36 chr9 101253575 101253686 -41017758 + HsTC2 DNA Tc2 1 115 -1783 5553 74 7 3 chr9 101253703 101254415 -41017029 - L1PA11 LINE L1 -21 6153 5439 234 258 0 0 chr9 101254415 101254481 -41016963 + HsTC2 DNA Tc2 1831 1896 -2 408 259 51 19 chr9 101254500 101254658 -41016786 + L1MC5 LINE L1 7656 7818 -143 1464 140 0 5 chr9 101254658 101254879 -41016565 - AluSx SINE Alu -61 251 32 252 0 0 0 chr9 101255024 101255052 -41016392 + (CGG)n Simple_repeat Simple_repeat 2 29 0 30 59 0 0 chr9 101255075 101255126 -41016318 + GC_rich Low_complexity Low_complexity 1 51 0 35 83 0 0 chr9 101255156 101255240 -41016204 + GC_rich Low_complexity Low_complexity 1 84 0 349 265 132 54 chr9 101256248 101256452 -41014992 - MIR SINE MIR -2 260 41 266 298 175 9 chr9 101258689 101258803 -41012641 - MIR SINE MIR -58 150 18 202 294 20 0 chr9 101260541 101260592 -41010852 - MIR SINE MIR -93 169 118 233 125 0 0 chr9 101260657 101260689 -41010755 - Tigger5 DNA MER2_type 0 2323 2292 270 0 0 0 chr9 101261064 101261094 -41010350 + (T)n Simple_repeat Simple_repeat 1 30 0 2168 108 0 7 chr9 101261115 101261421 -41010023 + AluSg SINE Alu 1 304 -6 948 222 112 53 chr9 101262039 101262395 -41009049 + L2 LINE L2 2930 3306 -7 272 261 242 7 chr9 101262449 101262602 -41008842 - L2 LINE L2 -835 2479 2291 189 74 0 0 chr9 101262692 101262719 -41008725 + (TC)n Simple_repeat Simple_repeat 2 28 0 262 271 171 8 chr9 101263341 101263470 -41007974 + MIR SINE MIR 112 261 -1 * 1077 258 98 9 chr9 101263453 101263771 -41007673 + L3 LINE CR1 1229 1574 -3 26 30 0 0 chr9 101265574 101265607 -41005837 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr9 101266687 101266718 -41004726 + AT_rich Low_complexity Low_complexity 1 31 0 2097 88 3 37 chr9 101266872 101267166 -41004278 - AluSq SINE Alu -29 284 1 1823 236 118 63 chr9 101267204 101268307 -41003137 - L1M4 LINE L1 -1060 5086 3924 1168 128 0 6 chr9 101268408 101268580 -41002864 - FRAM SINE Alu -6 170 1 195 257 68 40 chr9 101269332 101269406 -41002038 + MIR3 SINE MIR 121 196 -12 244 254 0 30 chr9 101269709 101269776 -41001668 + L2 LINE L2 3249 3313 0 265 287 64 11 chr9 101269782 101269876 -41001568 - MIR SINE MIR -13 249 151 484 274 115 8 chr9 101270238 101270472 -41000972 - L1ME4a LINE L1 -268 5853 5595 347 226 69 20 chr9 101270509 101270611 -41000833 - L3 LINE CR1 -688 889 783 183 299 11 46 chr9 101271555 101271642 -40999802 - L2 LINE L2 -999 2315 2232 297 167 0 0 chr9 101272412 101272466 -40998978 - HsTC2 DNA Tc2 -1598 300 247 1664 138 77 10 chr9 101272551 101272849 -40998595 + MER46B DNA MER2_type 44 236 0 238 373 0 45 chr9 101273338 101273448 -40997996 + MIR3 SINE MIR 98 202 -6 388 299 78 13 chr9 101273910 101274064 -40997380 + L2 LINE L2 3108 3271 -1 209 344 72 32 chr9 101275574 101275699 -40995745 + L2 LINE L2 3141 3270 -2 2567 208 43 52 chr9 101276197 101276808 -40994636 - MER77 LTR ERV1 0 605 1 355 289 70 16 chr9 101277043 101277171 -40994273 - L2 LINE L2 -8 3305 3171 188 283 0 19 chr9 101277277 101277330 -40994114 - L2 LINE L2 -224 3048 2997 216 0 0 0 chr9 101277657 101277681 -40993763 + (A)n Simple_repeat Simple_repeat 1 24 0 262 250 262 0 chr9 101278340 101278424 -40993020 - MIR3 SINE MIR -18 190 85 2056 144 3 3 chr9 101278798 101279110 -40992334 + AluSx SINE Alu 1 312 0 345 293 64 21 chr9 101280479 101280667 -40990777 + HAL1b LINE L1 514 709 -639 2189 106 14 0 chr9 101280871 101281164 -40990280 + AluSq SINE Alu 1 297 -16 219 161 36 18 chr9 101281222 101281278 -40990166 + T-rich Low_complexity Low_complexity 5 61 0 378 306 18 55 chr9 101282734 101282897 -40988547 + MIR SINE MIR 37 192 -70 1363 111 30 10 chr9 101283000 101283199 -40988245 + AluSg/x SINE Alu 98 300 -10 459 0 0 0 chr9 101283984 101284035 -40987409 + (TA)n Simple_repeat Simple_repeat 1 51 0 357 279 26 58 chr9 101284117 101284271 -40987173 + MIR SINE MIR 66 214 -48 2175 126 0 0 chr9 101285034 101285336 -40986108 - AluSx SINE Alu -10 302 1 22 80 0 0 chr9 101286843 101286893 -40984551 + AT_rich Low_complexity Low_complexity 1 50 0 1372 125 0 10 chr9 101287988 101288188 -40983256 - AluSc SINE Alu -19 290 93 1337 240 108 32 chr9 101288338 101288930 -40982514 - L1MC5 LINE L1 -25 7936 7300 2082 97 0 28 chr9 101289090 101289413 -40982031 + AluSg1 SINE Alu 1 315 0 193 286 9 114 chr9 101291156 101291261 -40980183 + MIR SINE MIR 58 151 -57 1790 174 3 3 chr9 101291699 101292004 -40979440 + AluJb SINE Alu 1 305 -7 3293 156 40 12 chr9 101292562 101293210 -40978234 - L1MB8 LINE L1 -5 6173 5508 22 0 0 0 chr9 101293210 101293232 -40978212 + AT_rich Low_complexity Low_complexity 1 22 0 358 338 149 49 chr9 101294183 101294591 -40976853 + L2 LINE L2 2824 3272 0 * 437 324 83 32 chr9 101294526 101294742 -40976702 - MIR SINE MIR -8 254 28 741 56 0 0 chr9 101294875 101294964 -40976480 - 5S rRNA rRNA -31 90 2 359 355 28 7 chr9 101297093 101297234 -40974210 + MIR3 SINE MIR 29 172 -36 204 274 0 185 chr9 101297577 101297712 -40973732 + L3 LINE CR1 20 129 -1448 852 168 0 0 chr9 101297717 101297854 -40973590 + AluJb SINE Alu 170 306 -6 414 260 0 10 chr9 101297891 101297995 -40973449 - HAL1 LINE L1 -2247 260 158 383 189 22 0 chr9 101298001 101298091 -40973353 - L1MC/D LINE L1 -2043 5765 5674 23 0 0 0 chr9 101298148 101298171 -40973273 + AT_rich Low_complexity Low_complexity 1 23 0 192 111 0 0 chr9 101300385 101300421 -40971023 + (T)n Simple_repeat Simple_repeat 1 36 0 648 238 49 11 chr9 101303157 101303342 -40968102 + L1ME1 LINE L1 1629 1820 -4576 1537 217 122 99 chr9 101303350 101303948 -40967496 - MLT1E2 LTR MaLR -10 614 3 2383 246 121 1 chr9 101304004 101305107 -40966337 + L1ME1 LINE L1 1890 3096 -3119 4254 212 116 47 chr9 101305132 101306662 -40964782 + L1ME1 LINE L1 3791 5426 -789 1687 212 121 24 chr9 101306795 101307094 -40964350 + L1ME1 LINE L1 5382 5651 -584 953 154 39 0 chr9 101307094 101307276 -40964168 - MER53 DNA DNA 0 189 1 1687 212 121 24 chr9 101307276 101307513 -40963931 + L1ME1 LINE L1 5651 5970 -265 3115 149 29 69 chr9 101307549 101308200 -40963244 + MER51A LTR ERV1 1 625 -9 455 189 71 16 chr9 101308216 101308343 -40963101 + L1MB8 LINE L1 6042 6175 -3 1783 133 13 13 chr9 101308388 101308688 -40962756 - AluJb SINE Alu -10 302 3 348 330 115 16 chr9 101309231 101309413 -40962031 + L2 LINE L2 3073 3272 0 4403 117 34 3 chr9 101310130 101310832 -40960612 - L1PA16 LINE L1 -9 6157 5434 2311 87 0 0 chr9 101310906 101311195 -40960249 - AluSg SINE Alu -21 289 1 222 283 17 17 chr9 101311393 101311453 -40959991 + L2 LINE L2 3254 3313 0 320 345 107 35 chr9 101311473 101311847 -40959597 - L3 LINE CR1 -47 1530 1130 415 241 35 6 chr9 101312351 101312571 -40958873 + (TA)n Simple_repeat Simple_repeat 1 226 0 2004 95 11 0 chr9 101312695 101312959 -40958485 - AluSx SINE Alu -6 306 40 2075 149 7 0 chr9 101313371 101313673 -40957771 - AluSx SINE Alu -8 304 1 598 256 69 103 chr9 101313756 101314435 -40957009 - HAL1 LINE L1 -1059 1448 793 2518 101 16 16 chr9 101314660 101315035 -40956409 + THE1C LTR MaLR 1 375 0 2331 98 16 0 chr9 101315488 101315793 -40955651 - AluSx SINE Alu -2 310 1 1021 255 136 39 chr9 101316111 101316574 -40954870 + MLT1J LTR MaLR 4 511 0 186 118 0 0 chr9 101316666 101316700 -40954744 + (CATG)n Simple_repeat Simple_repeat 2 35 0 234 62 0 0 chr9 101317640 101317672 -40953772 + (CA)n Simple_repeat Simple_repeat 1 32 0 26 0 0 0 chr9 101318022 101318048 -40953396 + AT_rich Low_complexity Low_complexity 1 26 0 948 217 159 38 chr9 101318384 101318729 -40952715 - MLT2C1 LTR ERVL 0 397 11 223 264 255 9 chr9 101321484 101321590 -40949854 - MIR SINE MIR -93 169 38 200 311 107 10 chr9 101322091 101322194 -40949250 - MIR3 SINE MIR -30 178 66 206 200 0 0 chr9 101322572 101322607 -40948837 + (CTG)n Simple_repeat Simple_repeat 1 35 0 547 244 134 42 chr9 101322627 101322865 -40948579 - MIR SINE MIR 0 262 3 217 266 25 38 chr9 101322900 101322979 -40948465 + L2 LINE L2 3137 3214 -58 348 259 100 63 chr9 101323732 101323777 -40947667 - L1ME4a LINE L1 -38 6083 6041 2367 98 0 10 chr9 101323777 101324083 -40947361 + AluSq SINE Alu 1 303 -10 348 259 100 63 chr9 101324083 101324276 -40947168 - L1ME4a LINE L1 -80 6041 5836 331 143 0 0 chr9 101324278 101324334 -40947110 - Alu SINE Alu -2 300 245 295 317 43 6 chr9 101324338 101324499 -40946945 - L1ME4a LINE L1 -301 5820 5654 828 181 47 6 chr9 101324527 101324698 -40946746 - MER20 DNA MER1_type -41 178 1 408 236 75 62 chr9 101324699 101324860 -40946584 - L1ME4a LINE L1 -465 5656 5494 2260 123 0 0 chr9 101324924 101325234 -40946210 - AluSx SINE Alu -2 310 1 1660 183 3 7 chr9 101326266 101326551 -40944893 + AluJo SINE Alu 8 291 -21 207 204 23 0 chr9 101326572 101326616 -40944828 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 843 242 77 32 chr9 101326757 101327035 -40944409 - Charlie8 DNA MER1_type -2141 276 17 26 64 0 0 chr9 101327280 101327327 -40944117 + AT_rich Low_complexity Low_complexity 1 47 0 2131 129 0 3 chr9 101327327 101327629 -40943815 - AluSx SINE Alu -11 301 1 267 185 0 0 chr9 101327723 101327777 -40943667 - MIR SINE MIR -57 151 98 249 119 0 0 chr9 101328033 101328075 -40943369 - L3 LINE CR1 -188 1389 1348 264 292 52 21 chr9 101328118 101328214 -40943230 - L2 LINE L2 -23 3249 3151 294 319 17 9 chr9 101328535 101328651 -40942793 + LTR16C LTR ERVL 373 489 -2 260 285 146 8 chr9 101328656 101328779 -40942665 - MIR3 SINE MIR -58 150 11 288 53 0 0 chr9 101330370 101330408 -40941036 + (CA)n Simple_repeat Simple_repeat 1 38 0 899 254 119 82 chr9 101330494 101330982 -40940462 - MLT1J LTR MaLR 0 511 6 276 320 10 0 chr9 101331266 101331369 -40940075 + MER103 DNA DNA 4 107 -59 242 330 26 17 chr9 101331557 101331672 -40939772 + MER5A DNA MER1_type 72 187 -2 426 319 27 27 chr9 101331816 101332004 -40939440 - L3 LINE CR1 -754 823 636 591 286 127 0 chr9 101332425 101332645 -40938799 - MIR SINE MIR -14 248 1 263 300 9 45 chr9 101334399 101334509 -40936935 + MIR3 SINE MIR 81 186 -22 1776 153 58 19 chr9 101334556 101334864 -40936580 - 7SLRNA srpRNA srpRNA 0 320 1 272 225 42 14 chr9 101335433 101335504 -40935940 + HAL1 LINE L1 2066 2138 -369 876 254 93 54 chr9 101335774 101336160 -40935284 + MLT1I LTR MaLR 1 401 -8 364 274 193 10 chr9 101336220 101336417 -40935027 + HAL1 LINE L1 2245 2477 -30 600 286 78 20 chr9 101336583 101336929 -40934515 - L1MC4a LINE L1 -1925 5883 5518 202 222 22 0 chr9 101337124 101337169 -40934275 - L2 LINE L2 -1 3312 3267 337 324 83 20 chr9 101337777 101337981 -40933463 - MIR SINE MIR -32 230 14 254 281 95 43 chr9 101339499 101339730 -40931714 + L2 LINE L2 2842 3084 -188 347 196 64 80 chr9 101339943 101340103 -40931341 + MLT1H LTR MaLR 432 549 0 252 0 0 0 chr9 101340873 101340901 -40930543 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1868 194 22 25 chr9 101340938 101341304 -40930140 + MLT1A1 LTR MaLR 1 365 0 405 0 0 0 chr9 101341684 101341729 -40929715 + (TG)n Simple_repeat Simple_repeat 2 46 0 2062 166 100 50 chr9 101342020 101342501 -40928943 + MLT1D LTR MaLR 1 505 0 515 213 100 1 chr9 101342603 101342745 -40928699 + MIR SINE MIR 36 188 -62 251 278 102 37 chr9 101343552 101343669 -40927775 - L1MC4 LINE L1 -91 7951 7843 1754 175 23 67 chr9 101343669 101344058 -40927386 + MLT1A2 LTR MaLR 1 372 -2 251 278 102 37 chr9 101344058 101344185 -40927259 - L1MC4 LINE L1 -199 7843 7691 225 0 0 0 chr9 101344751 101344776 -40926668 + (T)n Simple_repeat Simple_repeat 1 25 0 287 373 0 34 chr9 101344803 101344980 -40926464 + C-rich Low_complexity Low_complexity 5 175 0 244 260 221 0 chr9 101345040 101345117 -40926327 - MIR SINE MIR -12 250 157 413 216 170 13 chr9 101345123 101345276 -40926168 - MLT1L LTR MaLR -7 608 432 633 103 21 10 chr9 101345395 101345492 -40925952 + MER4A LTR ERV1 1 98 -566 1710 111 171 81 chr9 101345492 101345836 -40925608 + MER4A LTR ERV1 261 635 -29 316 283 54 0 chr9 101346231 101346323 -40925121 - L2 LINE L2 0 3272 3176 209 292 14 14 chr9 101346435 101346507 -40924937 - MIR SINE MIR -160 102 31 225 0 0 0 chr9 101346742 101346767 -40924677 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 966 253 68 70 chr9 101346989 101347459 -40923985 + LTR67 LTR ERVL 89 557 0 4111 159 40 62 chr9 101347561 101348425 -40923019 - L1MC3 LINE L1 0 7785 6941 1926 99 0 4 chr9 101348429 101348681 -40922763 + AluSq SINE Alu 37 287 -26 2911 151 4 40 chr9 101348713 101349242 -40922202 - L1MC3 LINE L1 -1054 6731 6222 518 279 90 36 chr9 101351089 101351311 -40920133 + MIR SINE MIR 29 262 0 244 276 43 74 chr9 101351347 101351510 -40919934 + MER103 DNA DNA 8 165 -1 236 270 16 0 chr9 101351583 101351646 -40919798 + HAL1b LINE L1 460 523 -825 28 61 0 0 chr9 101351819 101351868 -40919576 + AT_rich Low_complexity Low_complexity 1 49 0 372 269 12 6 chr9 101351964 101352135 -40919309 + (TA)n Simple_repeat Simple_repeat 2 173 0 10295 166 68 67 chr9 101352540 101352883 -40918561 - L1MA4A LINE L1 -8 6997 6656 2398 89 0 6 chr9 101352883 101353196 -40918248 - AluSx SINE Alu -1 311 1 10295 166 68 67 chr9 101353196 101353485 -40917959 - L1MA4A LINE L1 -349 6656 6369 2159 122 0 10 chr9 101353485 101353796 -40917648 - AluSx SINE Alu -4 308 1 10295 166 68 67 chr9 101353796 101354000 -40917444 - L1MA4A LINE L1 -636 6369 6167 2151 129 7 0 chr9 101354000 101354310 -40917134 - AluSq SINE Alu -1 312 1 10295 166 68 67 chr9 101354310 101355441 -40916003 - L1MA4A LINE L1 -838 6167 5039 845 126 25 0 chr9 101355441 101355560 -40915884 + FLAM_C SINE Alu 1 122 -21 10295 166 68 67 chr9 101355560 101355937 -40915507 - L1MA4A LINE L1 -1966 5039 4664 1865 116 78 22 chr9 101355937 101356256 -40915188 + MER1B DNA MER1_type 1 337 0 10295 166 68 67 chr9 101356256 101357744 -40913700 - L1MA4A LINE L1 -2341 4664 3064 2415 69 0 26 chr9 101358258 101358562 -40912882 + AluY SINE Alu 1 296 -15 12114 179 32 84 chr9 101358662 101361812 -40909632 - L1MA4A LINE L1 -3774 3074 89 21 0 0 0 chr9 101361899 101361920 -40909524 + AT_rich Low_complexity Low_complexity 1 21 0 313 336 23 0 chr9 101363541 101363672 -40907772 + MIR3 SINE MIR 68 201 -7 1703 98 0 9 chr9 101363803 101364028 -40907416 - AluSp SINE Alu -13 300 78 190 302 0 19 chr9 101364075 101364128 -40907316 + MIR SINE MIR 33 84 -178 304 309 100 0 chr9 101364448 101364580 -40906864 + MIR SINE MIR 40 183 -79 320 246 158 36 chr9 101365636 101365804 -40905640 - MIR SINE MIR -2 260 74 204 312 83 18 chr9 101367895 101368004 -40903440 + L2 LINE L2 3150 3265 -7 1108 133 76 18 chr9 101368095 101368332 -40903112 - MER33 DNA MER1_type -87 237 1 702 247 69 22 chr9 101368360 101368591 -40902853 + MIR SINE MIR 11 252 -10 702 281 87 40 chr9 101368927 101369351 -40902093 + L1MC4a LINE L1 5402 5845 -1963 1477 60 5 5 chr9 101369365 101369550 -40901894 + AluSg SINE Alu 1 185 -125 532 47 0 0 chr9 101369550 101369638 -40901806 + AluSg SINE Alu 217 304 0 315 212 147 47 chr9 101370205 101370375 -40901069 + MER5A DNA MER1_type 1 187 -2 21 0 0 0 chr9 101370607 101370628 -40900816 + GC_rich Low_complexity Low_complexity 1 21 0 190 295 0 16 chr9 101371797 101371858 -40899586 + L3 LINE CR1 1077 1136 -441 2288 109 3 0 chr9 101372362 101372666 -40898778 - AluY SINE Alu -6 305 1 208 385 31 47 chr9 101372739 101372931 -40898513 + L2 LINE L2 2972 3160 -112 348 309 148 4 chr9 101373038 101373281 -40898163 + L3 LINE CR1 1188 1465 -112 684 295 99 42 chr9 101374098 101374502 -40896942 - L2 LINE L2 -22 3291 2865 2409 107 0 0 chr9 101375960 101376270 -40895174 + AluSg SINE Alu 1 310 0 310 333 37 15 chr9 101376547 101376682 -40894762 + MIR SINE MIR 48 185 -77 340 268 113 46 chr9 101377679 101377873 -40893571 - MIR SINE MIR 0 262 56 38 39 0 0 chr9 101378024 101378076 -40893368 + AT_rich Low_complexity Low_complexity 1 52 0 1249 157 91 98 chr9 101378300 101378586 -40892858 - AluJo SINE Alu -13 299 16 1435 123 21 0 chr9 101378670 101378905 -40892539 - L1MA2 LINE L1 0 6304 6065 423 179 0 73 chr9 101379029 101379152 -40892292 - L1MC5 LINE L1 -198 7763 7650 555 135 77 0 chr9 101381171 101381275 -40890169 - L1MB3 LINE L1 0 6183 6072 927 158 36 0 chr9 101381331 101381496 -40889948 - L1MB3 LINE L1 -252 5931 5761 300 263 63 11 chr9 101382281 101382376 -40889068 + MIR SINE MIR 46 145 -63 1218 219 55 102 chr9 101382449 101383016 -40888428 - MER34 LTR ERV1 0 542 3 252 219 296 0 chr9 101383068 101383191 -40888253 - MIR SINE MIR -62 146 38 388 343 42 5 chr9 101383788 101383983 -40887461 - MIR3 SINE MIR -1 207 1 254 186 0 0 chr9 101384741 101384784 -40886660 - MER5A DNA MER1_type -1 188 146 388 96 0 0 chr9 101385147 101385195 -40886249 - MSTA LTR MaLR 0 428 381 1983 115 133 71 chr9 101385195 101385587 -40885857 + MSTA LTR MaLR 1 416 -12 655 137 8 60 chr9 101385581 101385698 -40885746 - MSTA LTR MaLR -317 111 1 * 1015 165 128 11 chr9 101385710 101385898 -40885546 - AluJo SINE Alu -102 210 1 1734 200 93 59 chr9 101386365 101386800 -40884644 + MER68 LTR ERV1 1 459 -103 2402 125 28 14 chr9 101386800 101387159 -40884285 + THE1B LTR MaLR 1 364 0 1734 200 93 59 chr9 101387159 101387263 -40884181 + MER68 LTR ERV1 459 558 -4 329 301 18 0 chr9 101387452 101387565 -40883879 - MIR SINE MIR -62 146 32 535 117 39 148 chr9 101387565 101387693 -40883751 + MER81 DNA DNA 1 114 0 257 217 130 122 chr9 101388846 101389076 -40882368 + MIR SINE MIR 16 247 -15 21 71 0 0 chr9 101389919 101389961 -40881483 + AT_rich Low_complexity Low_complexity 1 42 0 1145 149 0 0 chr9 101390213 101390381 -40881063 - AluSg/x SINE Alu -8 304 137 548 281 53 12 chr9 101390435 101390606 -40880838 - MIR3 SINE MIR -14 194 17 7624 34 34 0 chr9 101390893 101391877 -40879567 - L1PA5 LINE L1 -2 6152 5161 793 234 68 53 chr9 101392517 101392878 -40878566 - MLT1A1 LTR MaLR 0 396 3 597 281 76 86 chr9 101392878 101393287 -40878157 - MLT1J LTR MaLR -106 405 1 336 215 28 21 chr9 101393725 101393985 -40877459 + GA-rich Low_complexity Low_complexity 1 261 0 756 233 94 69 chr9 101394223 101394511 -40876933 - L1ME1 LINE L1 -5 6161 5867 645 253 46 0 chr9 101394892 101395066 -40876378 - L1ME3A LINE L1 -214 5956 5775 1662 78 0 9 chr9 101395359 101395576 -40875868 - AluY SINE Alu -14 297 83 7501 18 1 0 chr9 101395801 101396647 -40874797 + L1PA3 LINE L1 5307 6153 -2 27 29 0 0 chr9 101396648 101396682 -40874762 + AT_rich Low_complexity Low_complexity 1 34 0 216 294 39 20 chr9 101396958 101397060 -40874384 - MIR SINE MIR -96 166 63 373 247 9 47 chr9 101397417 101397569 -40873875 - L1MC4 LINE L1 -719 7151 6937 578 242 0 0 chr9 101397576 101397700 -40873744 - L1MC4 LINE L1 -1073 6969 6846 340 280 87 99 chr9 101399383 101400247 -40871197 - L1M4 LINE L1 -1870 4276 3424 1017 220 9 45 chr9 101400267 101400490 -40870954 + MER58A DNA MER1_type 2 216 -8 2144 104 0 27 chr9 101400490 101400787 -40870657 + AluSg SINE Alu 1 289 -21 967 101 101 6 chr9 101401446 101401604 -40869840 + L1PA15 LINE L1 5992 6164 -1 2540 126 43 24 chr9 101401616 101401655 -40869789 - MSTA LTR MaLR 0 428 391 2360 81 0 0 chr9 101401655 101401979 -40869465 + AluY SINE Alu 2 325 0 2540 126 43 24 chr9 101401979 101402358 -40869086 - MSTA LTR MaLR -37 391 1 204 185 0 0 chr9 101402385 101402439 -40869005 + (TG)n Simple_repeat Simple_repeat 1 54 0 219 269 56 19 chr9 101402668 101402776 -40868668 - MIR SINE MIR -60 148 37 195 376 0 0 chr9 101403372 101403457 -40867987 + L2 LINE L2 2889 2973 -299 1170 224 37 10 chr9 101403507 101403520 -40867924 - L1M4 LINE L1 -3388 2758 2747 2405 156 31 11 chr9 101403520 101403974 -40867470 - L1MB3 LINE L1 -7 6176 5714 1170 224 37 10 chr9 101403974 101404254 -40867190 - L1M4 LINE L1 -3399 2747 2457 281 309 106 8 chr9 101404409 101404532 -40866912 + L2 LINE L2 3171 3305 -8 513 232 24 43 chr9 101404672 101404836 -40866608 - MIR SINE MIR -70 192 32 401 287 57 53 chr9 101405204 101405469 -40865975 - L3 LINE CR1 -202 1375 1110 248 89 0 22 chr9 101405587 101405632 -40865812 + (GGA)n Simple_repeat Simple_repeat 3 46 0 1998 123 16 44 chr9 101406109 101406427 -40865017 + AluSx SINE Alu 1 309 -3 332 303 49 14 chr9 101406554 101406696 -40864748 + MIR3 SINE MIR 30 176 -32 188 325 34 17 chr9 101407424 101407541 -40863903 + MIR SINE MIR 18 136 -72 246 313 141 0 chr9 101407840 101407968 -40863476 + MIR3 SINE MIR 42 187 -21 619 226 28 83 chr9 101409409 101409590 -40861854 - MER58A DNA MER1_type 0 224 54 1357 146 179 0 chr9 101409596 101409842 -40861602 - AluJb SINE Alu -11 291 2 378 217 0 0 chr9 101409842 101409911 -40861533 - MER58A DNA MER1_type -36 71 3 243 258 0 32 chr9 101409912 101409974 -40861470 + L2 LINE L2 3213 3272 0 2323 81 0 47 chr9 101410551 101410871 -40860573 + AluSg SINE Alu 1 305 -5 2325 104 0 10 chr9 101411385 101411683 -40859761 + AluSx SINE Alu 1 295 -17 2382 94 0 0 chr9 101411686 101411985 -40859459 + AluSg SINE Alu 4 302 -8 387 271 36 14 chr9 101412433 101412573 -40858871 + MIR3 SINE MIR 43 185 -23 995 125 4 26 chr9 101412612 101412810 -40858634 - L1MB8 LINE L1 -2 6160 5978 * 1945 198 50 20 chr9 101412782 101413233 -40858211 - L1MB8 LINE L1 -122 6056 5594 263 362 14 39 chr9 101413236 101413443 -40858001 + L2 LINE L2 2848 3049 -223 2510 58 0 3 chr9 101413597 101413892 -40857552 - AluSq SINE Alu -19 294 1 192 189 0 0 chr9 101413914 101413951 -40857493 + L2 LINE L2 3222 3258 -14 533 322 103 0 chr9 101414415 101414688 -40856756 - L3 LINE CR1 -90 1487 1187 21 0 0 0 chr9 101414704 101414725 -40856719 + AT_rich Low_complexity Low_complexity 1 21 0 703 325 39 4 chr9 101414813 101415044 -40856400 - MIR SINE MIR -15 247 9 502 294 115 59 chr9 101415310 101415633 -40855811 + L2 LINE L2 2897 3237 -35 913 225 32 0 chr9 101416225 101416412 -40855032 + MIR SINE MIR 2 194 -68 330 309 37 31 chr9 101416473 101416635 -40854809 + L2 LINE L2 3146 3308 -5 848 273 81 40 chr9 101416666 101416880 -40854564 + L1ME4a LINE L1 5423 5627 -494 2091 114 4 0 chr9 101416880 101417191 -40854253 - AluSx SINE Alu 0 313 2 848 273 81 40 chr9 101417191 101417450 -40853994 + L1ME4a LINE L1 5627 5913 -208 458 234 11 0 chr9 101417450 101417544 -40853900 + MIR SINE MIR 94 188 -74 428 200 96 22 chr9 101417590 101417725 -40853719 + L1ME4a LINE L1 5908 6052 -69 252 274 16 0 chr9 101417734 101417796 -40853648 + MIR SINE MIR 195 257 -5 1788 188 0 16 chr9 101417807 101418121 -40853323 - AluJb SINE Alu -3 309 1 239 250 67 0 chr9 101418950 101419054 -40852390 + L1MC4a LINE L1 5221 5331 -815 732 285 80 51 chr9 101419140 101419551 -40851893 + L1ME LINE L1 5268 5690 -431 421 267 97 15 chr9 101419596 101419791 -40851653 + L1MC4a LINE L1 5648 5858 -1950 259 327 122 13 chr9 101420327 101420483 -40850961 - L3 LINE CR1 -174 1403 1231 265 339 12 55 chr9 101420491 101420656 -40850788 + L3 LINE CR1 1418 1575 -2 2052 102 3 33 chr9 101421381 101421684 -40849760 - AluSx SINE Alu -18 294 1 1297 313 117 10 chr9 101421806 101422642 -40848802 + L2 LINE L2 1537 2462 -852 2527 51 3 0 chr9 101422642 101422937 -40848507 + L1PA6 LINE L1 5855 6150 -4 236 382 0 0 chr9 101423089 101423191 -40848253 + L3 LINE CR1 1403 1504 -73 441 261 130 25 chr9 101423384 101423545 -40847899 - MIR3 SINE MIR -24 184 7 2545 71 0 0 chr9 101425139 101425450 -40845994 + AluY SINE Alu 1 311 0 213 39 0 0 chr9 101425857 101425883 -40845561 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 372 305 52 63 chr9 101426053 101426322 -40845122 + HAL1 LINE L1 1090 1355 -1152 245 62 0 0 chr9 101426455 101426487 -40844957 + MLT1F LTR MaLR 511 542 0 206 79 53 0 chr9 101428095 101428133 -40843311 + A-rich Low_complexity Low_complexity 2 41 0 2003 195 22 6 chr9 101428153 101428512 -40842932 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr9 101429095 101429120 -40842324 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr9 101429120 101429144 -40842300 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2097 104 22 4 chr9 101429146 101429424 -40842020 - AluSx SINE Alu -29 283 1 956 280 68 29 chr9 101429562 101429973 -40841471 - L1MC/D LINE L1 -2088 5720 5294 441 326 68 39 chr9 101429994 101430432 -40841012 - L1MC/D LINE L1 -913 5233 4783 1607 193 0 40 chr9 101430514 101430815 -40840629 - AluJo SINE Alu -23 289 1 2459 58 0 13 chr9 101430912 101431221 -40840223 - AluY SINE Alu -6 305 1 240 86 0 0 chr9 101431221 101431256 -40840188 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 729 175 63 0 chr9 101431277 101431403 -40840041 - FRAM SINE Alu -1 175 42 349 331 84 40 chr9 101431403 101431699 -40839745 - L1MC/D LINE L1 -1601 4545 4237 413 324 126 40 chr9 101432002 101432526 -40838918 - L1MC/D LINE L1 -2382 3764 3196 1151 150 98 0 chr9 101432526 101432719 -40838725 + L1PA16 LINE L1 5946 6157 -9 226 167 0 0 chr9 101432725 101432767 -40838677 + L1MDa LINE L1 1295 1336 -5204 381 311 77 6 chr9 101432810 101432993 -40838451 - L1MC/D LINE L1 -2936 3210 3015 922 124 4 184 chr9 101432997 101433231 -40838213 + 7SK RNA RNA 1 192 -1 332 241 205 36 chr9 101433252 101433623 -40837821 + L1MD3 LINE L1 7043 7648 -347 31 26 0 0 chr9 101433687 101433725 -40837719 + AT_rich Low_complexity Low_complexity 1 38 0 2027 94 14 21 chr9 101433737 101434023 -40837421 - AluSg SINE Alu -26 284 1 1790 185 152 87 chr9 101434838 101435358 -40836086 - MLT2B3 LTR ERVL 0 554 1 204 197 70 0 chr9 101435420 101435491 -40835953 + (TA)n Simple_repeat Simple_repeat 2 77 0 267 313 0 10 chr9 101435637 101435736 -40835708 - HAL1 LINE L1 -788 1719 1622 1805 129 47 0 chr9 101436249 101436550 -40834894 - AluSx SINE Alu 0 312 1 507 17 0 0 chr9 101437182 101437242 -40834202 + (TG)n Simple_repeat Simple_repeat 1 60 0 1488 258 86 58 chr9 101437524 101438167 -40833277 - MLT2F LTR ERVL -2 661 1 711 248 101 13 chr9 101438708 101438946 -40832498 + MIR SINE MIR 3 261 -1 3342 77 4 60 chr9 101439147 101439223 -40832221 - MLT2A1 LTR ERVL 0 444 365 186 118 0 0 chr9 101439223 101439257 -40832187 + (TA)n Simple_repeat Simple_repeat 2 35 0 3342 77 4 60 chr9 101439257 101439650 -40831794 - MLT2A1 LTR ERVL -79 365 1 544 305 25 30 chr9 101439763 101439960 -40831484 - L3 LINE CR1 -7 1570 1375 285 271 170 33 chr9 101440971 101441106 -40830338 - MIR SINE MIR -65 143 45 329 335 29 35 chr9 101441922 101442092 -40829352 - MIR3 SINE MIR -7 201 33 232 203 149 14 chr9 101442330 101442362 -40829082 + L1MA9 LINE L1 6120 6146 -166 342 0 0 0 chr9 101442362 101442400 -40829044 + (CA)n Simple_repeat Simple_repeat 1 38 0 232 203 149 14 chr9 101442400 101442441 -40829003 + L1MA9 LINE L1 6146 6203 -109 239 266 21 75 chr9 101442451 101442545 -40828899 - MIR SINE MIR -71 191 103 1415 151 5 0 chr9 101443525 101443743 -40827701 - AluJb SINE Alu -7 305 87 421 295 22 22 chr9 101443744 101443883 -40827561 - L2 LINE L2 0 3272 3134 521 252 59 70 chr9 101443902 101444188 -40827256 + MLT1J LTR MaLR 30 312 -199 945 139 0 14 chr9 101444725 101444869 -40826575 - FRAM SINE Alu -14 162 21 429 20 0 0 chr9 101445099 101445149 -40826295 + (TG)n Simple_repeat Simple_repeat 2 51 0 662 288 105 4 chr9 101445992 101446221 -40825223 - MIR SINE MIR 0 262 11 198 281 53 0 chr9 101446365 101446422 -40825022 + L2 LINE L2 3194 3253 -19 260 249 137 46 chr9 101446450 101446596 -40824848 - MIR SINE MIR -65 143 19 250 349 60 60 chr9 101447624 101447905 -40823539 + L2 LINE L2 2898 3178 -94 230 260 154 57 chr9 101448365 101448488 -40822956 + MIR SINE MIR 58 192 -70 441 196 54 18 chr9 101448523 101448635 -40822809 - L1ME3 LINE L1 -2 6160 6045 373 298 35 0 chr9 101450538 101450652 -40820792 + MIR SINE MIR 34 151 -111 4571 117 19 2 chr9 101450886 101451510 -40819934 + MER41B LTR ERV1 1 635 0 420 289 19 90 chr9 101451613 101451824 -40819620 - MIR SINE MIR -34 228 33 423 237 29 22 chr9 101452272 101452411 -40819033 + MIR3 SINE MIR 12 151 -57 311 336 9 0 chr9 101452424 101452531 -40818913 + MER117 DNA MER1_type 6 113 -84 482 279 260 14 chr9 101452545 101452907 -40818537 - L2 LINE L2 0 3313 2863 253 239 0 83 chr9 101452918 101453027 -40818417 + MER117 DNA MER1_type 98 197 0 321 321 27 9 chr9 101453334 101453446 -40817998 + MIR SINE MIR 78 191 -71 25 0 0 0 chr9 101453482 101453507 -40817937 + AT_rich Low_complexity Low_complexity 1 25 0 514 271 117 31 chr9 101453627 101453952 -40817492 + L1ME3A LINE L1 5545 5897 -273 914 128 0 8 chr9 101453956 101454081 -40817363 + FLAM_C SINE Alu 1 124 -9 274 254 30 18 chr9 101455873 101456042 -40815402 + (TA)n Simple_repeat Simple_repeat 1 171 0 640 233 138 5 chr9 101456044 101456233 -40815211 + L1ME3A LINE L1 5944 6157 -13 250 270 146 11 chr9 101456272 101456450 -40814994 + L1ME4a LINE L1 5683 5884 -237 1887 128 30 7 chr9 101456484 101456788 -40814656 + AluJo SINE Alu 1 311 -1 5391 140 45 15 chr9 101456994 101457868 -40813576 + MER4D LTR ERV1 1 900 -3 252 157 0 0 chr9 101458400 101458451 -40812993 + L1ME4a LINE L1 6070 6120 -1 368 186 264 8 chr9 101458500 101458629 -40812815 - MER5A DNA MER1_type -21 168 7 283 300 45 0 chr9 101459018 101459128 -40812316 + L3 LINE CR1 1424 1538 -39 282 303 58 45 chr9 101459415 101459570 -40811874 - L3 LINE CR1 -99 1478 1322 206 274 48 0 chr9 101459651 101459713 -40811731 - MER5B DNA MER1_type -45 133 69 349 276 72 54 chr9 101460171 101460450 -40810994 + L1ME4a LINE L1 5601 5884 -237 27 0 0 0 chr9 101460533 101460560 -40810884 + AT_rich Low_complexity Low_complexity 1 27 0 200 346 46 46 chr9 101460701 101460854 -40810590 - L3 LINE CR1 -25 1552 1400 458 304 30 36 chr9 101461371 101461539 -40809905 + MIR SINE MIR 20 186 -76 496 285 49 61 chr9 101461983 101462309 -40809135 - L1ME LINE L1 -335 5786 5465 250 279 123 29 chr9 101462336 101462442 -40809002 - L1ME LINE L1 -743 5403 5308 2201 104 0 19 chr9 101462442 101462758 -40808686 - AluSg SINE Alu 0 310 1 250 279 123 29 chr9 101462758 101462895 -40808549 - L1ME LINE L1 -838 5308 5137 1251 27 0 32 chr9 101462907 101463093 -40808351 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 299 150 17 0 chr9 101463093 101463153 -40808291 + CT-rich Low_complexity Low_complexity 4 64 0 2015 149 7 0 chr9 101463163 101463471 -40807973 - AluSx SINE Alu -2 310 1 462 327 48 27 chr9 101463555 101463885 -40807559 - L1ME LINE L1 -1086 5060 4724 742 282 110 43 chr9 101463911 101464262 -40807182 - L1ME LINE L1 -1527 4619 4293 2542 59 10 0 chr9 101464262 101464568 -40806876 - AluY SINE Alu -2 309 1 742 282 110 43 chr9 101464568 101465061 -40806383 - L1ME LINE L1 -1853 4293 3718 449 335 149 26 chr9 101465102 101465532 -40805912 + L2 LINE L2 2828 3310 -3 375 275 28 28 chr9 101465666 101465808 -40805636 + MIR SINE MIR 121 262 0 188 221 23 81 chr9 101465840 101465926 -40805518 + MIR SINE MIR 108 188 -74 579 242 31 104 chr9 101466036 101466301 -40805143 + MIR SINE MIR 14 262 0 471 284 16 0 chr9 101466617 101466744 -40804700 - MIR SINE MIR -113 149 21 814 152 27 38 chr9 101467104 101467303 -40804141 - MER6 DNA MER2_type 0 865 -62 930 267 153 19 chr9 101467336 101467723 -40803721 + MLT1J2 LTR MaLR 1 400 -9 197 176 27 81 chr9 101467911 101467985 -40803459 - MIR SINE MIR -154 108 39 380 273 130 12 chr9 101468454 101468707 -40802737 + L1ME4a LINE L1 5836 6118 -3 21 0 0 0 chr9 101468744 101468765 -40802679 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr9 101468836 101468874 -40802570 + AT_rich Low_complexity Low_complexity 1 38 0 1901 128 40 0 chr9 101469507 101469781 -40801663 - AluSx SINE Alu -27 285 1 1865 186 50 43 chr9 101470287 101470729 -40800715 - MLT1D LTR MaLR 0 505 61 515 196 65 0 chr9 101473118 101473225 -40798219 + MER81 DNA DNA 1 114 0 364 278 59 109 chr9 101473396 101473853 -40797591 - L2 LINE L2 0 3313 2880 1932 192 34 3 chr9 101474584 101474938 -40796506 - MLT1A1 LTR MaLR 0 365 1 183 321 103 38 chr9 101476225 101476409 -40795035 + L3 LINE CR1 541 736 -841 988 106 0 0 chr9 101477075 101477207 -40794237 - FLAM_C SINE Alu 0 133 2 203 189 95 33 chr9 101477345 101477410 -40794034 + MIR SINE MIR 16 83 -133 186 189 0 0 chr9 101477524 101477561 -40793883 + (TTA)n Simple_repeat Simple_repeat 3 39 0 2279 117 0 0 chr9 101478093 101478393 -40793051 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr9 101478465 101478500 -40792944 + AT_rich Low_complexity Low_complexity 1 35 0 240 310 85 47 chr9 101478944 101479073 -40792371 + MIR SINE MIR 15 148 -114 1829 137 60 18 chr9 101479224 101479509 -40791935 - AluSx SINE Alu -15 297 1 2086 113 0 31 chr9 101479519 101479837 -40791607 - AluSg SINE Alu -2 308 1 211 315 5 17 chr9 101479883 101479973 -40791471 - MIR SINE MIR -113 95 6 2703 233 54 26 chr9 101480172 101480837 -40790607 + L1ME3A LINE L1 4487 5188 -974 2077 119 3 3 chr9 101480837 101481155 -40790289 + AluSp SINE Alu 1 318 0 2703 233 54 26 chr9 101481155 101481534 -40789910 + L1ME3A LINE L1 5188 5555 -607 1402 198 130 112 chr9 101481616 101482208 -40789236 + L1ME3A LINE L1 5551 6153 -17 395 130 0 130 chr9 101483353 101483445 -40787999 + MADE1 DNA Mariner 1 80 0 321 336 146 8 chr9 101483488 101483741 -40787703 + L3 LINE CR1 985 1272 -305 240 258 75 67 chr9 101484339 101484459 -40786985 - L2 LINE L2 0 3313 3193 323 111 95 0 chr9 101484792 101484855 -40786589 - MER53 DNA DNA -84 105 37 302 252 136 34 chr9 101485862 101486191 -40785253 + L3 LINE CR1 1164 1573 -4 392 275 12 12 chr9 101487055 101487226 -40784218 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 245 289 33 13 chr9 101487454 101487606 -40783838 + (TGGA)n Simple_repeat Simple_repeat 1 155 0 261 324 76 0 chr9 101488257 101488362 -40783082 + MIR3 SINE MIR 94 206 -2 2205 93 4 0 chr9 101488967 101489271 -40782173 - AluSc SINE Alu 0 305 1 1379 136 25 51 chr9 101489758 101489944 -40781500 + MER30 DNA MER1_type 1 181 -49 2504 55 0 13 chr9 101489944 101490252 -40781192 + AluY SINE Alu 1 304 -7 1379 136 25 51 chr9 101490252 101490301 -40781143 + MER30 DNA MER1_type 181 230 0 568 224 40 0 chr9 101492121 101492246 -40779198 - MIR SINE MIR -84 178 49 2398 102 0 6 chr9 101492253 101492566 -40778878 + AluSq SINE Alu 1 311 -2 1839 164 17 0 chr9 101492616 101492908 -40778536 + AluJb SINE Alu 1 297 -15 964 90 0 0 chr9 101493670 101493792 -40777652 - AluSq SINE Alu -13 300 179 655 94 0 0 chr9 101493792 101493877 -40777567 - AluSq SINE Alu -227 86 2 393 314 215 15 chr9 101494681 101494955 -40776489 + L2 LINE L2 2935 3263 -9 357 321 50 19 chr9 101495368 101495527 -40775917 + MIR3 SINE MIR 17 180 -28 198 196 0 0 chr9 101496366 101496412 -40775032 - MIR SINE MIR -64 144 99 375 298 173 10 chr9 101496413 101496621 -40774823 - L3 LINE CR1 -3 1574 1333 1806 161 0 0 chr9 101497034 101497301 -40774143 - AluSx SINE Alu -45 267 1 353 335 91 6 chr9 101498979 101499155 -40772289 - MER117 DNA MER1_type 0 197 7 194 257 135 14 chr9 101502394 101502468 -40768976 + MIR SINE MIR 63 145 -63 713 249 73 0 chr9 101502510 101502687 -40768757 + MER58A DNA MER1_type 35 224 0 524 277 136 14 chr9 101502779 101502992 -40768452 + LTR16C LTR ERVL 253 491 0 490 309 69 17 chr9 101503713 101503946 -40767498 - MIR SINE MIR 0 262 18 2582 182 13 9 chr9 101503962 101504417 -40767027 + L1ME LINE L1 5331 5787 -379 1025 194 37 28 chr9 101505074 101505291 -40766153 - MER20 DNA MER1_type 0 219 1 47 0 0 0 chr9 101506326 101506373 -40765071 + AT_rich Low_complexity Low_complexity 1 47 0 219 67 101 22 chr9 101506373 101506462 -40764982 + (TATAA)n Simple_repeat Simple_repeat 5 100 0 29 0 0 0 chr9 101506462 101506491 -40764953 + AT_rich Low_complexity Low_complexity 1 29 0 333 248 44 9 chr9 101507002 101507115 -40764329 - L1ME4a LINE L1 -7 6114 5998 861 254 25 28 chr9 101507215 101507498 -40763946 - L1ME3 LINE L1 -9 6153 5872 237 65 0 0 chr9 101507581 101507612 -40763832 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 356 261 0 0 chr9 101509655 101509747 -40761697 + L3 LINE CR1 639 730 -847 280 120 0 40 chr9 101509896 101509942 -40761502 + MER20 DNA MER1_type 106 149 -70 598 204 19 38 chr9 101509942 101510099 -40761345 - MER20 DNA MER1_type 0 219 66 396 346 65 55 chr9 101510120 101510554 -40760890 + L2 LINE L2 2816 3253 -19 306 0 0 0 chr9 101511256 101511290 -40760154 + (TG)n Simple_repeat Simple_repeat 2 35 0 378 321 178 11 chr9 101511364 101511651 -40759793 - L3 LINE CR1 -111 1466 1132 378 0 0 0 chr9 101512227 101512269 -40759175 + (TG)n Simple_repeat Simple_repeat 2 43 0 349 207 0 0 chr9 101512886 101512944 -40758500 - L3 LINE CR1 -130 1447 1390 439 212 74 2 chr9 101513548 101513692 -40757752 + MIR SINE MIR 33 183 -65 685 180 7 40 chr9 101513849 101513999 -40757445 - LTR16A1 LTR ERVL -1 456 312 934 176 21 21 chr9 101514008 101514196 -40757248 - MER53 DNA DNA -1 188 1 574 214 33 150 chr9 101514289 101514648 -40756796 - LTR16A1 LTR ERVL -140 317 1 240 241 0 0 chr9 101515675 101515729 -40755715 + MIR SINE MIR 67 120 -88 346 289 61 0 chr9 101516532 101516646 -40754798 + MIR SINE MIR 23 143 -119 486 0 0 0 chr9 101516936 101516990 -40754454 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 256 12 37 chr9 101517261 101517343 -40754101 + GA-rich Low_complexity Low_complexity 2 81 0 207 0 0 0 chr9 101517987 101518010 -40753434 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 232 247 33 107 chr9 101518977 101519127 -40752317 + L2 LINE L2 2918 3056 -216 364 301 53 15 chr9 101519296 101519429 -40752015 + L2 LINE L2 3102 3239 -33 1402 203 82 28 chr9 101519463 101519818 -40751626 + MLT1A2 LTR MaLR 1 374 0 414 325 68 0 chr9 101519929 101520092 -40751352 + MIR SINE MIR 19 192 -70 250 306 77 8 chr9 101520637 101520770 -40750674 + MIR SINE MIR 17 150 -68 210 335 106 22 chr9 101521376 101521555 -40749889 + MIR SINE MIR 20 213 -49 952 234 126 65 chr9 101521937 101522351 -40749093 + LTR16B LTR ERVL 1 439 -25 331 320 26 11 chr9 101522395 101522571 -40748873 - MIR3 SINE MIR -76 186 1 * 455 269 20 82 chr9 101522571 101522771 -40748673 - MIR3 SINE MIR -47 215 30 770 244 5 0 chr9 101523534 101523702 -40747742 + MIR SINE MIR 21 191 -67 527 273 52 0 chr9 101524206 101524360 -40747084 - MER117 DNA MER1_type -32 165 4 474 234 129 0 chr9 101524394 101524518 -40746926 + MIR3 SINE MIR 54 193 -15 375 324 15 0 chr9 101524697 101524833 -40746611 - MIR3 SINE MIR 0 208 71 213 235 111 0 chr9 101525046 101525118 -40746326 + MIR3 SINE MIR 85 165 -43 276 322 17 75 chr9 101525118 101525292 -40746152 - MER5B DNA MER1_type 0 178 15 1333 208 140 25 chr9 101525331 101525725 -40745719 + MLT1D LTR MaLR 27 465 -40 326 344 89 30 chr9 101525721 101526023 -40745421 + LTR67 LTR ERVL 142 461 -96 * 2277 74 10 16 chr9 101526432 101526744 -40744700 + AluSx SINE Alu 1 310 -2 241 269 62 92 chr9 101527047 101527177 -40744267 + MIR3 SINE MIR 2 127 -81 2575 193 49 75 chr9 101527221 101527870 -40743574 + MER82 DNA MER2_type 11 642 -11 22 0 0 0 chr9 101527877 101527899 -40743545 + AT_rich Low_complexity Low_complexity 1 22 0 2371 162 28 23 chr9 101527899 101528331 -40743113 + Tigger2a DNA MER2_type 1 434 0 2111 116 3 0 chr9 101528907 101529208 -40742236 - AluSq SINE Alu -11 302 1 215 310 14 14 chr9 101529533 101529604 -40741840 - L2 LINE L2 0 3272 3202 730 235 132 53 chr9 101529651 101529894 -40741550 + MIR SINE MIR 1 262 0 683 300 73 12 chr9 101530092 101530339 -40741105 - MIR SINE MIR 0 262 1 346 329 279 6 chr9 101530944 101531436 -40740008 - L3 LINE CR1 -77 1500 875 1409 217 24 68 chr9 101531668 101532051 -40739393 + MLT1A2 LTR MaLR 1 366 -8 541 259 65 29 chr9 101532626 101532796 -40738648 + MIR SINE MIR 51 226 -36 217 304 139 0 chr9 101534145 101534260 -40737184 - L2 LINE L2 -1862 1452 1322 222 37 0 0 chr9 101534590 101534617 -40736827 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 249 196 0 0 chr9 101535777 101535823 -40735621 - L2 LINE L2 0 3313 3268 1940 142 3 3 chr9 101535992 101536294 -40735150 + AluSg SINE Alu 1 302 -8 251 364 0 0 chr9 101536742 101536830 -40734614 - MIR3 SINE MIR -9 199 112 2112 123 0 7 chr9 101536852 101537162 -40734282 + AluSg1 SINE Alu 1 308 -1 468 51 0 0 chr9 101537186 101537245 -40734199 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 1692 148 53 0 chr9 101537248 101537531 -40733913 - AluJb SINE Alu -14 298 1 349 360 40 11 chr9 101537697 101537872 -40733572 - L2 LINE L2 0 3272 3093 912 294 4 4 chr9 101537881 101538109 -40733335 - MIR SINE MIR -1 261 34 599 146 0 0 chr9 101538144 101538233 -40733211 - AluJ/FLAM SINE Alu -215 97 9 1714 277 60 54 chr9 101538940 101539086 -40732358 - L2 LINE L2 0 3313 3169 1338 183 5 5 chr9 101539086 101539305 -40732139 + MER58A DNA MER1_type 2 220 -4 1714 277 60 54 chr9 101539305 101539573 -40731871 - L2 LINE L2 -144 3169 2904 1739 160 7 4 chr9 101539573 101539892 -40731552 + AluJb SINE Alu 1 320 0 1714 277 60 54 chr9 101539892 101540452 -40730992 - L2 LINE L2 -409 2904 2316 239 259 0 35 chr9 101540851 101540909 -40730535 + L2 LINE L2 3179 3234 -38 783 314 68 19 chr9 101541263 101541632 -40729812 - MLT1I LTR MaLR -20 389 3 250 222 0 0 chr9 101542886 101542931 -40728513 - MIR SINE MIR -140 122 78 464 251 170 55 chr9 101542936 101543207 -40728237 - MLT1L LTR MaLR -4 611 310 24 0 0 0 chr9 101543303 101543327 -40728117 + AT_rich Low_complexity Low_complexity 1 24 0 1859 134 0 52 chr9 101543581 101543910 -40727534 + AluSx SINE Alu 1 312 0 22 0 0 0 chr9 101543971 101543993 -40727451 + AT_rich Low_complexity Low_complexity 1 22 0 390 283 42 0 chr9 101544383 101544503 -40726941 - MIR SINE MIR -61 201 77 1550 171 119 0 chr9 101544506 101544799 -40726645 + MLT1D LTR MaLR 4 331 -174 2222 86 3 13 chr9 101545289 101545591 -40725853 + AluY SINE Alu 4 302 -9 366 248 75 119 chr9 101545643 101545921 -40725523 + L2 LINE L2 2966 3231 -82 262 226 87 17 chr9 101546787 101546902 -40724542 - L2 LINE L2 -273 2999 2877 665 303 103 22 chr9 101548130 101548490 -40722954 - MLT1J LTR MaLR -49 462 74 506 253 122 41 chr9 101548587 101548808 -40722636 + MIR SINE MIR 5 243 -19 587 344 17 17 chr9 101548861 101549102 -40722342 + MIR SINE MIR 22 262 0 1959 146 0 0 chr9 101549638 101549933 -40721511 + AluJo SINE Alu 1 295 -17 857 240 78 0 chr9 101550020 101550237 -40721207 + MIR SINE MIR 29 262 0 458 99 14 0 chr9 101550380 101550451 -40720993 - L1MB8 LINE L1 0 6178 6107 219 317 40 0 chr9 101550989 101551090 -40720354 + MIR SINE MIR 119 223 -39 1498 112 4 40 chr9 101551132 101551381 -40720063 - AluSp SINE Alu -8 305 66 746 183 147 52 chr9 101551550 101551801 -40719643 - ORSL DNA AcHobo 0 275 1 256 274 0 0 chr9 101552556 101552607 -40718837 - MER5B DNA MER1_type -4 174 124 5318 84 14 30 chr9 101552619 101552776 -40718668 - L1MA2 LINE L1 0 6304 6146 2193 104 3 0 chr9 101552776 101553074 -40718370 - AluSx SINE Alu -13 299 1 5318 84 14 30 chr9 101553074 101553092 -40718352 - L1MA2 LINE L1 -158 6146 6129 477 0 0 0 chr9 101553099 101553152 -40718292 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 2077 121 0 0 chr9 101553152 101553434 -40718010 - AluSx SINE Alu -27 285 1 5318 84 14 30 chr9 101553434 101554053 -40717391 - L1MA2 LINE L1 -175 6129 5522 401 193 114 26 chr9 101554054 101554168 -40717276 - MER5B DNA MER1_type -34 144 21 311 320 105 17 chr9 101554207 101554379 -40717065 + MER20B DNA MER1_type 3 189 -594 387 288 115 0 chr9 101555189 101555328 -40716116 - MIR SINE MIR -77 185 31 2522 149 102 35 chr9 101556112 101556183 -40715261 - L1MB4 LINE L1 -1 6179 6114 1736 179 7 0 chr9 101556183 101556490 -40714954 + AluJo SINE Alu 1 309 -3 2522 149 102 35 chr9 101556490 101556955 -40714489 - L1MB4 LINE L1 -66 6114 5607 401 259 283 6 chr9 101557304 101557647 -40713797 - L2 LINE L2 -433 2881 2444 219 232 21 84 chr9 101557620 101557715 -40713729 - MIR3 SINE MIR -8 200 112 * 232 175 0 0 chr9 101557828 101557868 -40713576 + MIR SINE MIR 105 144 -118 1998 129 0 7 chr9 101558071 101558366 -40713078 - AluSx SINE Alu -19 293 1 284 334 141 44 chr9 101558748 101559068 -40712376 + L2 LINE L2 2887 3237 -35 261 313 73 21 chr9 101559481 101559577 -40711867 - MIR3 SINE MIR -21 187 87 2250 100 0 0 chr9 101559681 101559981 -40711463 - AluSx SINE Alu -12 300 1 340 279 36 67 chr9 101559991 101560156 -40711288 - MER5A DNA MER1_type -28 161 2 23 33 0 0 chr9 101560239 101560269 -40711175 + AT_rich Low_complexity Low_complexity 1 30 0 200 269 0 0 chr9 101560518 101560570 -40710874 + CT-rich Low_complexity Low_complexity 2 53 0 2599 231 43 30 chr9 101561259 101561903 -40709541 + MER82 DNA MER2_type 1 653 0 437 276 43 50 chr9 101562739 101562916 -40708528 - MIR SINE MIR -63 145 11 264 209 179 0 chr9 101564271 101564338 -40707106 - MIR3 SINE MIR -15 193 115 742 268 95 54 chr9 101564655 101565376 -40706068 - L1MC5 LINE L1 -32 7929 7263 700 241 82 125 chr9 101565428 101565615 -40705829 - L1MC5 LINE L1 -733 7228 7035 2078 107 0 26 chr9 101565615 101565923 -40705521 - AluSq SINE Alu -13 300 1 700 241 82 125 chr9 101565923 101566124 -40705320 - L1MC5 LINE L1 -926 7035 6827 1706 161 7 23 chr9 101566124 101566434 -40705010 - AluJo SINE Alu -7 305 1 700 241 82 125 chr9 101566434 101566691 -40704753 - L1MC5 LINE L1 -1134 6827 6561 1294 179 88 7 chr9 101566691 101566987 -40704457 - MER33 DNA MER1_type -4 320 1 700 241 82 125 chr9 101566987 101567343 -40704101 - L1MC5 LINE L1 -1400 6561 6287 1869 143 0 32 chr9 101567344 101567652 -40703792 - AluSx SINE Alu -14 298 1 183 238 24 0 chr9 101567807 101567849 -40703595 + MIR SINE MIR 105 147 -61 385 280 131 61 chr9 101568278 101568653 -40702791 - L1ME4a LINE L1 -103 6018 5618 344 226 59 29 chr9 101569065 101569167 -40702277 + MER5A DNA MER1_type 7 111 -78 375 261 23 46 chr9 101569297 101569427 -40702017 + MER5A DNA MER1_type 63 189 0 202 229 104 125 chr9 101570468 101570523 -40700921 + MIR SINE MIR 97 106 -102 1988 114 13 3 chr9 101570523 101570821 -40700623 + AluSx SINE Alu 1 301 -11 202 229 104 125 chr9 101570821 101570861 -40700583 + MIR SINE MIR 106 145 -63 24 32 0 0 chr9 101571638 101571669 -40699775 + AT_rich Low_complexity Low_complexity 1 31 0 2069 112 10 7 chr9 101571757 101572060 -40699384 - AluSx SINE Alu -8 304 1 207 225 90 54 chr9 101572404 101572515 -40698929 - MIR SINE MIR -57 151 37 5360 86 59 50 chr9 101574045 101574069 -40697375 + MER4D LTR ERV1 1 23 -849 2179 103 0 0 chr9 101574069 101574369 -40697075 + AluSx SINE Alu 1 300 -12 5360 86 59 50 chr9 101574369 101574879 -40696565 + MER4D LTR ERV1 23 549 -323 263 28 28 0 chr9 101574879 101574915 -40696529 + (CACCC)n Simple_repeat Simple_repeat 5 41 0 5360 86 59 50 chr9 101574915 101575243 -40696201 + MER4D LTR ERV1 549 872 0 456 263 45 13 chr9 101575413 101575528 -40695916 + MIR SINE MIR 102 225 -37 3737 142 45 13 chr9 101575528 101576143 -40695301 - MER41B LTR ERV1 0 635 1 456 263 45 13 chr9 101576143 101576183 -40695261 + MIR SINE MIR 225 262 0 22 35 0 0 chr9 101576196 101576225 -40695219 + AT_rich Low_complexity Low_complexity 1 29 0 194 216 196 52 chr9 101576909 101576977 -40694467 + MIR SINE MIR 36 93 -115 5114 143 21 44 chr9 101576977 101577348 -40694096 + MER54A LTR ERVL 1 379 -522 1832 133 11 0 chr9 101577348 101577654 -40693790 + AluSq SINE Alu 13 321 0 5114 143 21 44 chr9 101577654 101577812 -40693632 + MER54A LTR ERVL 379 539 -362 1796 120 8 4 chr9 101577812 101578078 -40693366 - AluSx SINE Alu -45 267 1 5114 143 21 44 chr9 101578078 101578468 -40692976 + MER54A LTR ERVL 539 901 0 194 216 196 52 chr9 101578468 101578496 -40692948 + MIR SINE MIR 93 146 -62 1398 261 127 40 chr9 101578501 101578762 -40692682 - L1M4c LINE L1 -4276 2287 2050 243 0 0 0 chr9 101578762 101578789 -40692655 + (TA)n Simple_repeat Simple_repeat 2 28 0 1398 261 127 40 chr9 101578789 101579374 -40692070 - L1M4c LINE L1 -4513 2050 1518 230 0 33 0 chr9 101579374 101579404 -40692040 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1480 149 37 19 chr9 101579407 101579675 -40691769 - AluJo SINE Alu -30 282 10 1398 261 127 40 chr9 101579675 101579954 -40691490 - L1M4c LINE L1 -5046 1517 909 2081 205 186 6 chr9 101579954 101580476 -40690968 - MLT1E1 LTR MaLR -38 616 1 1161 234 69 133 chr9 101580476 101581203 -40690241 - MLT1E1-int LTR MaLR 0 1371 692 575 222 75 87 chr9 101581334 101581483 -40689961 - MLT1E1-int LTR MaLR -709 662 516 315 0 0 0 chr9 101581483 101581518 -40689926 + (TC)n Simple_repeat Simple_repeat 1 35 0 575 222 75 87 chr9 101581518 101581620 -40689824 - MLT1E1-int LTR MaLR -855 516 414 26 0 0 0 chr9 101581635 101581661 -40689783 + AT_rich Low_complexity Low_complexity 1 26 0 267 188 0 0 chr9 101581662 101581710 -40689734 - MLT1E1-int LTR MaLR -945 426 379 5572 127 15 24 chr9 101581728 101582091 -40689353 - L1MA4 LINE L1 -2 6298 5933 1874 147 6 13 chr9 101582091 101582403 -40689041 - AluSx SINE Alu 0 312 3 2040 125 3 0 chr9 101582408 101582711 -40688733 - AluSx SINE Alu -8 304 1 5572 127 15 24 chr9 101582711 101583258 -40688186 - L1MA4 LINE L1 -371 5929 5390 430 198 12 0 chr9 101583260 101583346 -40688098 - MLT1E1-int LTR MaLR -982 389 303 1473 140 0 21 chr9 101583373 101583609 -40687835 - AluJo SINE Alu -45 267 37 350 158 298 0 chr9 101583612 101583726 -40687718 - MLT1E1-int LTR MaLR -1223 148 1 1172 179 105 19 chr9 101583726 101583983 -40687461 - MLT1E1 LTR MaLR 0 654 376 337 162 114 105 chr9 101583978 101584083 -40687361 + MLT1E1 LTR MaLR 194 400 -254 * 584 231 54 25 chr9 101584417 101584482 -40686962 - MER5A DNA MER1_type -1 188 126 2130 106 3 3 chr9 101584482 101584783 -40686661 + AluSx SINE Alu 1 301 -11 584 231 54 25 chr9 101584783 101584896 -40686548 - MER5A DNA MER1_type -63 126 4 294 260 94 8 chr9 101585049 101585176 -40686268 - MIR3 SINE MIR -1 207 70 411 21 0 0 chr9 101585595 101585643 -40685801 + (TAA)n Simple_repeat Simple_repeat 3 50 0 629 296 44 30 chr9 101585643 101585846 -40685598 - MIR SINE MIR -29 233 28 2076 129 0 0 chr9 101586559 101586861 -40684583 - AluSx SINE Alu -10 302 1 627 319 149 3 chr9 101586884 101587219 -40684225 - L3 LINE CR1 -5 1572 1189 300 91 0 0 chr9 101587409 101587453 -40683991 + (TG)n Simple_repeat Simple_repeat 1 44 0 579 261 148 35 chr9 101587490 101587548 -40683896 + HAL1 LINE L1 2248 2298 -209 2261 97 0 0 chr9 101587548 101587848 -40683596 + AluSx SINE Alu 1 300 -12 579 261 148 35 chr9 101587848 101588019 -40683425 + HAL1 LINE L1 2298 2503 -4 370 298 90 28 chr9 101588101 101588279 -40683165 + MIR SINE MIR 4 192 -70 219 341 0 11 chr9 101588596 101588687 -40682757 - MIR3 SINE MIR -9 199 110 476 288 26 13 chr9 101589109 101589262 -40682182 - MIR3 SINE MIR -24 184 30 405 0 0 0 chr9 101589403 101589448 -40681996 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 230 255 133 20 chr9 101589852 101589950 -40681494 - L1ME4a LINE L1 -48 6073 5965 319 349 86 6 chr9 101589959 101590134 -40681310 - L3 LINE CR1 -201 1376 1188 424 301 55 14 chr9 101590159 101590305 -40681139 - MIR SINE MIR -2 260 109 238 396 9 0 chr9 101590315 101590426 -40681018 - L3 LINE CR1 -513 1064 953 230 304 194 19 chr9 101591353 101591616 -40679828 - L2 LINE L2 -7 3265 2957 404 299 106 13 chr9 101591906 101592217 -40679227 + L2 LINE L2 1851 2190 -1124 1983 132 0 22 chr9 101592231 101592542 -40678902 - AluSq SINE Alu -9 304 1 2076 120 3 0 chr9 101592585 101592885 -40678559 - AluSx SINE Alu -11 301 1 314 289 57 46 chr9 101592906 101593100 -40678344 - MLT1J LTR MaLR -28 483 288 284 179 67 46 chr9 101593624 101593652 -40677792 - MLT1L LTR MaLR -377 134 108 1779 92 6 111 chr9 101593652 101593977 -40677467 - AluSg SINE Alu -9 291 1 284 179 67 46 chr9 101593977 101594070 -40677374 - MLT1L LTR MaLR -403 108 20 540 270 181 51 chr9 101595139 101595532 -40675912 + MLT1K LTR MaLR 136 579 -9 2033 123 0 3 chr9 101596450 101596751 -40674693 + AluSx SINE Alu 13 312 0 424 255 0 40 chr9 101596848 101597009 -40674435 + MIR SINE MIR 37 188 -74 2027 105 7 3 chr9 101597212 101597498 -40673946 - AluSq SINE Alu -20 293 7 970 264 165 24 chr9 101597509 101597933 -40673511 - MLT1K LTR MaLR -13 575 92 767 235 43 0 chr9 101598406 101598568 -40672876 + MER45A DNA AcHobo 10 178 0 660 190 140 0 chr9 101598881 101599036 -40672408 + MER5A DNA MER1_type 4 183 -6 2164 164 8 10 chr9 101599154 101599537 -40671907 - MLT1B LTR MaLR -8 382 1 295 291 23 0 chr9 101599569 101599655 -40671789 - MIR SINE MIR -15 247 160 222 208 21 0 chr9 101599666 101599714 -40671730 - L2 LINE L2 -13 3259 3211 201 217 163 54 chr9 101599751 101599843 -40671601 - MIR SINE MIR -60 148 47 2190 114 0 0 chr9 101599948 101600247 -40671197 - AluSx SINE Alu -13 299 1 2069 123 0 19 chr9 101600631 101600941 -40670503 - AluSx SINE Alu -8 304 1 690 344 106 24 chr9 101601241 101601732 -40669712 - L3 LINE CR1 -197 1380 850 254 317 83 0 chr9 101601921 101602041 -40669403 + MLT1J LTR MaLR 3 132 -379 378 42 0 0 chr9 101602138 101602186 -40669258 + (GA)n Simple_repeat Simple_repeat 1 48 0 1365 108 28 5 chr9 101602189 101602401 -40669043 + Tigger7 DNA MER2_type 2363 2579 -8 462 178 111 89 chr9 101602529 101602607 -40668837 + MLT1J LTR MaLR 327 411 -100 2123 119 0 0 chr9 101602607 101602910 -40668534 - AluSg SINE Alu -7 303 1 462 178 111 89 chr9 101602910 101602966 -40668478 + MLT1J LTR MaLR 411 464 -47 613 272 60 77 chr9 101603170 101603519 -40667925 - L2 LINE L2 -16 3256 2914 359 250 0 12 chr9 101604311 101604395 -40667049 + MIR3 SINE MIR 90 172 -36 198 285 56 49 chr9 101604412 101604556 -40666888 + MIR3 SINE MIR 30 174 -34 1678 152 60 0 chr9 101604700 101604983 -40666461 + L1PA15 LINE L1 5864 6163 -2 1909 96 4 0 chr9 101605001 101605252 -40666192 + AluSx SINE Alu 40 291 -21 451 309 122 32 chr9 101605638 101605981 -40665463 + L2 LINE L2 2939 3312 -1 699 276 46 5 chr9 101606161 101606378 -40665066 - L2 LINE L2 -1303 2011 1786 532 272 17 44 chr9 101606561 101606741 -40664703 - MIR3 SINE MIR -14 194 20 234 0 0 0 chr9 101607176 101607202 -40664242 + (CAT)n Simple_repeat Simple_repeat 2 27 0 1424 152 43 40 chr9 101607205 101607507 -40663937 - L1MB3 LINE L1 -6 6177 5875 366 357 38 11 chr9 101608176 101608388 -40663056 - MIR3 SINE MIR -53 209 1 287 339 76 18 chr9 101608457 101608628 -40662816 + L2 LINE L2 2431 2611 -703 323 288 22 43 chr9 101608687 101608826 -40662618 + MER103 DNA DNA 23 158 -8 585 196 146 51 chr9 101609189 101609232 -40662212 - AluJo SINE Alu -138 174 136 255 31 0 0 chr9 101609232 101609264 -40662180 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 585 196 146 51 chr9 101609264 101609312 -40662132 - AluJo SINE Alu -176 136 94 1787 163 35 37 chr9 101609312 101609686 -40661758 - THE1C LTR MaLR -2 373 1 585 196 146 51 chr9 101609686 101609751 -40661693 - AluJo SINE Alu -218 94 2 282 282 0 0 chr9 101609781 101609852 -40661592 + L1ME4a LINE L1 5494 5564 -557 468 211 55 0 chr9 101609853 101609962 -40661482 + L2 LINE L2 3194 3308 -5 754 266 97 9 chr9 101609962 101610293 -40661151 + L1ME4a LINE L1 5566 5925 -196 317 190 38 13 chr9 101610338 101610417 -40661027 + L1ME4a LINE L1 6041 6121 0 555 281 9 75 chr9 101611430 101611627 -40659817 + MIR SINE MIR 48 230 -32 2204 128 6 14 chr9 101611627 101611971 -40659473 + MER2 DNA MER2_type 4 344 0 555 281 9 75 chr9 101611971 101612001 -40659443 + MIR SINE MIR 230 260 -2 338 317 40 0 chr9 101612007 101612108 -40659336 - L2 LINE L2 0 3272 3168 615 310 88 58 chr9 101612179 101612576 -40658868 + L2 LINE L2 2864 3272 0 268 239 80 138 chr9 101612978 101613166 -40658278 + MIR3 SINE MIR 30 206 -2 1456 194 46 58 chr9 101613671 101613823 -40657621 - L1MB7 LINE L1 0 6184 6032 1840 82 13 73 chr9 101613823 101614126 -40657318 + AluSg SINE Alu 1 285 -25 1456 194 46 58 chr9 101614126 101614319 -40657125 - L1MB7 LINE L1 -152 6032 5843 2302 79 0 0 chr9 101614795 101615086 -40656358 + AluY SINE Alu 1 291 -20 5579 34 3 10 chr9 101615108 101615780 -40655664 + L1PA7 LINE L1 5486 6152 -2 387 302 122 74 chr9 101616189 101616621 -40654823 - L1M4 LINE L1 -965 5181 4733 314 292 143 6 chr9 101616939 101617100 -40654344 + MLT1J LTR MaLR 281 463 -48 344 328 91 22 chr9 101617117 101617452 -40653992 - L1M4 LINE L1 -1964 4182 3826 623 186 241 14 chr9 101617621 101617766 -40653678 + MER5A DNA MER1_type 6 183 -6 1506 101 114 4 chr9 101617782 101618019 -40653425 + AluSq SINE Alu 1 263 -50 210 37 0 0 chr9 101618027 101618054 -40653390 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 363 23 0 0 chr9 101618053 101618097 -40653347 + (CA)n Simple_repeat Simple_repeat 1 44 0 196 163 61 20 chr9 101618258 101618307 -40653137 - L2 LINE L2 -2737 577 527 299 346 39 66 chr9 101619048 101619230 -40652214 - MIR SINE MIR -55 207 31 367 155 17 0 chr9 101620431 101620489 -40650955 - MER5B DNA MER1_type 0 178 120 541 241 41 94 chr9 101620733 101621169 -40650275 + L1ME LINE L1 526 938 -5132 3102 164 20 0 chr9 101621226 101621762 -40649682 + L1MC3 LINE L1 7238 7784 -1 2170 212 46 19 chr9 101621757 101622299 -40649145 + L1ME1 LINE L1 5466 6022 -144 * 238 118 0 0 chr9 101622299 101622333 -40649111 + MER3 DNA MER1_type 16 49 -160 269 188 213 0 chr9 101622345 101622425 -40649019 + L1ME2 LINE L1 6068 6164 0 230 235 272 12 chr9 101622444 101622525 -40648919 - MER5B DNA MER1_type -76 102 1 341 337 195 0 chr9 101623395 101623585 -40647859 - L3 LINE CR1 -11 1566 1340 195 376 26 34 chr9 101623626 101623743 -40647701 - L3 LINE CR1 -348 1229 1114 237 267 23 23 chr9 101623763 101623849 -40647595 - L2 LINE L2 -4 3309 3224 2014 130 3 0 chr9 101624044 101624343 -40647101 - AluSx SINE Alu -12 300 1 368 255 51 0 chr9 101624684 101624782 -40646662 - MIR SINE MIR -113 149 47 234 278 25 123 chr9 101624843 101625005 -40646439 - L2 LINE L2 0 3272 3127 281 317 36 30 chr9 101625187 101625354 -40646090 + L2 LINE L2 2505 2672 -642 243 308 77 50 chr9 101625671 101625701 -40645743 - L1MA9 LINE L1 -383 5929 5900 769 297 37 63 chr9 101625701 101625755 -40645689 - L1ME3 LINE L1 -272 5892 5838 2764 121 34 5 chr9 101625755 101626169 -40645275 - MSTB LTR MaLR 0 426 1 769 297 37 63 chr9 101626169 101626384 -40645060 - L1ME3 LINE L1 -326 5838 5636 1830 166 126 3 chr9 101626384 101626709 -40644735 + MLT1A1 LTR MaLR 1 365 0 769 297 37 63 chr9 101626709 101626866 -40644578 - L1ME3 LINE L1 -528 5636 5476 373 302 79 40 chr9 101626884 101627086 -40644358 + L2 LINE L2 2653 2862 -452 244 300 31 161 chr9 101627160 101627302 -40644142 + L2 LINE L2 2872 2940 -332 1870 103 36 7 chr9 101627302 101627583 -40643861 - AluSx SINE Alu -21 291 3 244 300 31 161 chr9 101627583 101627800 -40643644 + L2 LINE L2 2940 3184 -88 346 294 103 8 chr9 101627935 101628061 -40643383 - MIR3 SINE MIR -54 154 17 369 221 52 73 chr9 101628616 101628752 -40642692 + MIR SINE MIR 130 262 0 292 337 0 0 chr9 101628997 101629092 -40642352 - MIR3 SINE MIR -27 181 87 231 239 0 0 chr9 101629464 101629531 -40641913 + CT-rich Low_complexity Low_complexity 4 70 0 375 281 96 52 chr9 101629870 101630074 -40641370 - MIR SINE MIR -50 212 4 345 47 0 0 chr9 101630394 101630437 -40641007 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 263 309 20 99 chr9 101631499 101631651 -40639793 - MIR SINE MIR -10 252 113 2207 109 0 0 chr9 101631754 101632065 -40639379 - AluY SINE Alu 0 311 1 427 273 227 25 chr9 101633014 101633212 -40638232 + MIR SINE MIR 19 256 -6 798 121 0 15 chr9 101633533 101633665 -40637779 - L1MA3 LINE L1 0 6305 6176 1489 161 80 4 chr9 101633698 101633804 -40637640 + AluJo SINE Alu 5 101 -211 225 0 0 0 chr9 101633804 101633829 -40637615 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1489 161 80 4 chr9 101633829 101633996 -40637448 + AluJo SINE Alu 101 299 -13 956 301 145 6 chr9 101634044 101634403 -40637041 - MLT1I LTR MaLR 0 409 1 266 248 33 74 chr9 101634926 101635048 -40636396 - MIR SINE MIR -92 116 1 876 180 34 0 chr9 101635509 101635687 -40635757 - MER53 DNA DNA 0 189 6 207 262 0 0 chr9 101635752 101635813 -40635631 + (TG)n Simple_repeat Simple_repeat 2 62 0 2105 130 0 0 chr9 101635918 101636225 -40635219 + AluSq SINE Alu 1 307 -6 353 322 90 16 chr9 101636238 101636483 -40634961 - L2 LINE L2 -509 2805 2543 335 337 0 0 chr9 101636589 101636681 -40634763 + L2 LINE L2 3181 3272 0 351 221 0 0 chr9 101636714 101636800 -40634644 + GA-rich Low_complexity Low_complexity 3 88 0 275 157 0 71 chr9 101636888 101636958 -40634486 + MIR SINE MIR 187 251 -11 198 189 0 0 chr9 101637274 101637311 -40634133 + L2 LINE L2 3225 3261 -11 407 315 62 7 chr9 101637633 101637779 -40633665 + L2 LINE L2 3147 3300 -13 207 0 0 0 chr9 101637779 101637802 -40633642 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 4787 122 14 22 chr9 101638255 101639041 -40632403 - L1MA4A LINE L1 -3 6300 5521 242 297 102 42 chr9 101639176 101639294 -40632150 + L2 LINE L2 3148 3272 0 397 316 15 8 chr9 101639410 101639543 -40631901 - L3 LINE CR1 -74 1503 1370 749 229 1 128 chr9 101639560 101639854 -40631590 + MIR SINE MIR 4 258 -4 22 56 0 0 chr9 101640173 101640209 -40631235 + AT_rich Low_complexity Low_complexity 1 36 0 1385 161 0 20 chr9 101640237 101640485 -40630959 - AluJo SINE Alu -47 265 23 182 219 24 0 chr9 101640911 101640952 -40630492 - MIR3 SINE MIR -16 192 151 404 285 69 8 chr9 101641181 101641311 -40630133 - MIR SINE MIR -50 212 75 216 0 0 0 chr9 101641518 101641542 -40629902 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 185 304 87 0 chr9 101641583 101641652 -40629792 - MIR SINE MIR -81 127 53 306 311 0 39 chr9 101642057 101642160 -40629284 - MIR SINE MIR -117 145 47 302 252 99 29 chr9 101642426 101642563 -40628881 + MIR SINE MIR 38 184 -62 393 58 0 0 chr9 101642668 101642720 -40628724 + (CA)n Simple_repeat Simple_repeat 1 52 0 486 277 116 7 chr9 101642743 101642898 -40628546 - MIR SINE MIR -38 224 53 754 155 176 0 chr9 101642932 101643074 -40628370 - MER5A DNA MER1_type -21 168 2 2020 89 4 7 chr9 101643278 101643558 -40627886 + AluSc SINE Alu 16 294 -15 527 172 0 20 chr9 101644174 101644273 -40627171 - L1M4 LINE L1 -1205 4941 4845 2157 177 12 9 chr9 101644273 101644692 -40626752 + L1M4 LINE L1 4667 5086 -1060 1480 247 113 0 chr9 101644689 101645142 -40626302 - L1M4 LINE L1 -1627 4519 4016 * 1338 105 5 0 chr9 101645150 101645341 -40626103 - AluSg SINE Alu -118 192 1 250 209 0 110 chr9 101645345 101645397 -40626047 - L1M4 LINE L1 -2163 3983 3944 2149 114 13 0 chr9 101645397 101645705 -40625739 + AluSx SINE Alu 1 312 0 250 209 0 110 chr9 101645705 101645743 -40625701 - L1M4 LINE L1 -2202 3944 3903 315 213 49 0 chr9 101646109 101646170 -40625274 - MER96B DNA MER1_type? 0 417 354 651 225 66 70 chr9 101646216 101646296 -40625148 - MIR SINE MIR -34 228 149 1953 122 0 44 chr9 101646296 101646615 -40624829 - AluSx SINE Alu -7 305 1 651 225 66 70 chr9 101646615 101646745 -40624699 - MIR SINE MIR -113 149 17 620 188 19 111 chr9 101646745 101646952 -40624492 - MER5A DNA MER1_type 0 189 2 651 225 66 70 chr9 101646952 101646967 -40624477 - MIR SINE MIR -245 17 3 532 271 12 41 chr9 101647711 101647881 -40623563 + MER5B DNA MER1_type 8 172 -6 555 284 40 0 chr9 101648095 101648243 -40623201 - MIR SINE MIR -74 188 35 189 323 0 16 chr9 101648266 101648328 -40623116 - L3 LINE CR1 -120 1457 1397 368 301 128 0 chr9 101648822 101648955 -40622489 + MIR3 SINE MIR 48 197 -11 461 188 129 0 chr9 101648985 101649086 -40622358 - MER81 DNA DNA 0 114 1 1000 245 48 54 chr9 101650064 101650403 -40621041 - L1MC5 LINE L1 -146 7815 7478 691 151 0 0 chr9 101650403 101650522 -40620922 + L1MA4 LINE L1 6178 6296 -4 1000 245 48 54 chr9 101650522 101650644 -40620800 - L1MC5 LINE L1 -483 7478 7357 2097 41 38 15 chr9 101650676 101650943 -40620501 - AluY SINE Alu -10 301 29 1505 146 73 4 chr9 101650987 101651248 -40620196 - AluJo SINE Alu -12 300 22 1876 236 116 12 chr9 101651607 101652108 -40619336 + MLT1H1 LTR MaLR 3 555 0 697 284 39 18 chr9 101653004 101653286 -40618158 - L1ME4a LINE L1 -240 5881 5594 221 333 37 37 chr9 101653843 101653951 -40617493 + MIR SINE MIR 26 133 -129 654 243 0 20 chr9 101655129 101655281 -40616163 - MER112 DNA MER1_type -25 235 87 391 242 96 30 chr9 101655363 101655521 -40615923 - MER20B DNA MER1_type -18 201 31 1850 158 3 6 chr9 101655792 101656103 -40615341 + AluJo SINE Alu 1 310 -2 2209 65 4 0 chr9 101656663 101656940 -40614504 + AluSp SINE Alu 1 278 -35 189 0 0 0 chr9 101656941 101656962 -40614482 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 455 293 12 39 chr9 101657107 101657290 -40614154 - MER5A DNA MER1_type 0 189 3 347 294 189 7 chr9 101657480 101657633 -40613811 + MIR3 SINE MIR 21 201 -7 1633 95 9 5 chr9 101657647 101657868 -40613576 - AluSx SINE Alu -90 222 1 227 141 43 54 chr9 101657929 101658021 -40613423 + (TTAA)n Simple_repeat Simple_repeat 3 93 0 182 41 61 41 chr9 101658058 101658107 -40613337 + (TAA)n Simple_repeat Simple_repeat 2 51 0 33 0 0 0 chr9 101658107 101658140 -40613304 + AT_rich Low_complexity Low_complexity 1 33 0 500 138 0 25 chr9 101658237 101658317 -40613127 - FLAM SINE Alu -26 117 40 2419 67 0 3 chr9 101658334 101658646 -40612798 - AluY SINE Alu 0 311 1 271 252 107 29 chr9 101659262 101659365 -40612079 - LTR16A1 LTR ERVL 0 457 347 460 169 39 0 chr9 101659930 101660007 -40611437 - FLAM SINE Alu -24 119 40 2221 320 55 21 chr9 101660151 101661891 -40609553 - ERVL LTR ERVL -438 5326 3504 1571 296 57 55 chr9 101661885 101662582 -40608862 + ERVL LTR ERVL 2164 2862 -2902 * 1613 242 58 29 chr9 101663141 101663587 -40607857 - LTR16C LTR ERVL 0 491 33 1165 289 91 36 chr9 101664823 101665317 -40606127 - Charlie8 DNA MER1_type -1868 549 29 1840 128 3 55 chr9 101665328 101665655 -40605789 + AluSx SINE Alu 1 310 -2 267 305 38 23 chr9 101666263 101666394 -40605050 - MIR3 SINE MIR -65 143 11 570 305 0 7 chr9 101666567 101666718 -40604726 + MIR SINE MIR 112 261 -1 335 246 200 0 chr9 101667138 101667248 -40604196 - L2 LINE L2 -2 3311 3180 268 317 4 0 chr9 101667433 101667539 -40603905 + MIR SINE MIR 79 150 -58 584 294 76 9 chr9 101668877 101669088 -40602356 + MIR SINE MIR 38 262 0 460 152 30 20 chr9 101669132 101669231 -40602213 - L1PA16 LINE L1 -7 6159 6060 681 240 113 39 chr9 101670059 101670288 -40601156 - MIR SINE MIR -2 260 15 761 228 140 9 chr9 101670624 101670852 -40600592 - MIR SINE MIR 0 262 5 2333 200 74 11 chr9 101670921 101671477 -40599967 + L1ME1 LINE L1 5571 6161 -5 295 364 91 14 chr9 101671824 101671967 -40599477 + MIR3 SINE MIR 21 174 -34 2541 66 3 0 chr9 101672261 101672562 -40598882 + AluY SINE Alu 1 302 -9 257 291 96 35 chr9 101672790 101672989 -40598455 - L1ME3A LINE L1 -1 6169 5959 1725 261 71 0 chr9 101673058 101673609 -40597835 - L1ME3A LINE L1 -222 5948 5359 3794 166 23 8 chr9 101673618 101674369 -40597075 - L1MB5 LINE L1 0 6174 5413 886 105 6 35 chr9 101674389 101674561 -40596883 + (TTCC)n Simple_repeat Simple_repeat 1 167 0 1941 115 49 14 chr9 101674561 101674847 -40596597 - AluSg SINE Alu -14 296 1 400 195 58 0 chr9 101674848 101674935 -40596509 - L1MB5 LINE L1 -752 5426 5335 238 307 123 63 chr9 101675471 101675505 -40595939 + L2 LINE L2 2920 2951 -321 1683 182 27 0 chr9 101675505 101675802 -40595642 - AluJo SINE Alu -7 305 1 238 307 123 63 chr9 101675802 101676099 -40595345 + L2 LINE L2 2951 3271 -1 802 121 57 0 chr9 101676507 101676631 -40594813 - FLAM_C SINE Alu -2 131 1 758 163 6 0 chr9 101677360 101677520 -40593924 + (CAACC)n Simple_repeat Simple_repeat 2 162 0 200 257 48 57 chr9 101677903 101678008 -40593436 - L2 LINE L2 -31 3241 3138 25 83 0 0 chr9 101678157 101678217 -40593227 + AT_rich Low_complexity Low_complexity 1 60 0 522 278 118 50 chr9 101678225 101678725 -40592719 - L1ME4a LINE L1 -70 6051 5518 383 355 26 26 chr9 101678989 101679144 -40592300 - MER5B DNA MER1_type -21 157 3 205 250 0 0 chr9 101679150 101679198 -40592246 - MIR3 SINE MIR -52 156 109 269 289 107 41 chr9 101679301 101679422 -40592022 + L2 LINE L2 3144 3272 0 409 216 10 10 chr9 101679833 101679930 -40591514 - MIR SINE MIR -89 119 23 2108 159 0 0 chr9 101679972 101680280 -40591164 + AluSx SINE Alu 5 312 0 313 267 78 0 chr9 101680366 101680456 -40590988 - L1MC4 LINE L1 -1333 6709 6613 217 173 58 0 chr9 101680457 101680509 -40590935 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 218 258 0 0 chr9 101680576 101680642 -40590802 + L2 LINE L2 2635 2700 -614 651 154 57 63 chr9 101680685 101680860 -40590584 + MER5A DNA MER1_type 15 188 -1 1869 186 41 53 chr9 101680926 101681437 -40590007 + MLT1D LTR MaLR 1 505 0 1336 145 4 66 chr9 101681626 101681868 -40589576 - AluJb SINE Alu -15 297 71 234 295 39 0 chr9 101681895 101681973 -40589471 + L2 LINE L2 3190 3270 -2 454 240 19 0 chr9 101682118 101682222 -40589222 + MIR3 SINE MIR 93 198 -10 1377 115 0 98 chr9 101683053 101683288 -40588156 + AluJo SINE Alu 1 212 -100 506 163 0 0 chr9 101683475 101683555 -40587889 + AluJo SINE Alu 216 295 -17 302 354 129 22 chr9 101683555 101683959 -40587485 + L2 LINE L2 2516 2962 -352 412 244 10 142 chr9 101683997 101684070 -40587374 + MER5A DNA MER1_type 4 85 -104 1829 169 26 13 chr9 101684070 101684378 -40587066 + AluJb SINE Alu 1 312 0 412 244 10 142 chr9 101684378 101684509 -40586935 + MER5A DNA MER1_type 85 181 -8 463 279 188 10 chr9 101684519 101684727 -40586717 + MIR SINE MIR 4 248 -14 244 336 51 80 chr9 101685108 101685483 -40585961 - L2 LINE L2 -16 3297 2934 223 184 118 53 chr9 101686008 101686084 -40585360 + MIR3 SINE MIR 123 203 -5 513 222 60 8 chr9 101686788 101686905 -40584539 + L2 LINE L2 3190 3312 -1 307 337 0 0 chr9 101687283 101687375 -40584069 - MIR3 SINE MIR -34 174 83 219 296 73 62 chr9 101687525 101687704 -40583740 + MIR SINE MIR 1 181 -81 202 340 57 28 chr9 101687773 101687879 -40583565 + L2 LINE L2 3164 3272 0 535 324 27 5 chr9 101687920 101688105 -40583339 - MIR SINE MIR -72 190 2 347 264 66 0 chr9 101688704 101688795 -40582649 + MIR3 SINE MIR 91 187 -21 322 315 39 0 chr9 101689321 101689451 -40581993 + MIR SINE MIR 103 237 -25 186 43 0 0 chr9 101690952 101690975 -40580469 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 1046 163 27 0 chr9 101691786 101691970 -40579474 - MER5A DNA MER1_type 0 189 1 646 298 72 34 chr9 101691970 101692205 -40579239 + MIR SINE MIR 9 252 -10 1318 225 148 26 chr9 101692212 101692639 -40578805 - MLT1D LTR MaLR 0 505 27 290 259 49 12 chr9 101693023 101693104 -40578340 - MIR SINE MIR -68 194 111 429 319 55 0 chr9 101693228 101693391 -40578053 - MIR SINE MIR -34 228 57 488 221 98 0 chr9 101693749 101693871 -40577573 + MIR SINE MIR 50 183 -79 584 218 11 86 chr9 101693878 101694052 -40577392 + MER5B DNA MER1_type 18 178 0 251 236 14 56 chr9 101694117 101694189 -40577255 - L2 LINE L2 0 3313 3245 352 304 6 6 chr9 101694623 101694794 -40576650 + (TG)n Simple_repeat Simple_repeat 2 172 0 284 328 17 11 chr9 101694810 101694987 -40576457 + (TG)n Simple_repeat Simple_repeat 2 179 0 451 332 93 18 chr9 101695980 101696206 -40575238 - MIR SINE MIR -8 254 12 274 241 47 73 chr9 101696234 101696354 -40575090 - MER5B DNA MER1_type -56 133 6 462 313 83 21 chr9 101696383 101696575 -40574869 + MIR SINE MIR 53 256 -6 222 349 0 0 chr9 101696888 101696951 -40574493 + MIR SINE MIR 88 150 -58 326 129 16 0 chr9 101697164 101697226 -40574218 + GA-rich Low_complexity Low_complexity 1 63 0 504 242 8 8 chr9 101697823 101697947 -40573497 - MIR3 SINE MIR -19 189 66 335 306 32 54 chr9 101697986 101698172 -40573272 + L3 LINE CR1 1255 1436 -141 199 264 19 0 chr9 101699949 101700002 -40571442 - L2 LINE L2 -529 2785 2732 315 227 100 36 chr9 101700254 101700364 -40571080 - MIR3 SINE MIR -7 201 85 351 261 168 65 chr9 101700616 101700938 -40570506 - L2 LINE L2 0 3272 2918 415 295 18 0 chr9 101701020 101701132 -40570312 - MIR SINE MIR 0 262 149 218 245 138 53 chr9 101702020 101702114 -40569330 + MIR3 SINE MIR 59 160 -48 218 79 0 26 chr9 101702559 101702597 -40568847 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 1065 280 100 31 chr9 101702803 101703496 -40567948 - L1MC4a LINE L1 -104 6017 5291 189 74 0 0 chr9 101703585 101703612 -40567832 + (TTA)n Simple_repeat Simple_repeat 2 28 0 186 276 17 0 chr9 101703762 101703820 -40567624 + MIR3 SINE MIR 96 154 -54 1802 174 3 13 chr9 101703820 101704118 -40567326 + AluJb SINE Alu 1 295 -17 192 77 0 0 chr9 101704141 101704167 -40567277 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 562 333 49 44 chr9 101704832 101705116 -40566328 + L1ME2 LINE L1 5530 5818 -346 2423 79 3 13 chr9 101705116 101705421 -40566023 + AluSq SINE Alu 1 302 -11 562 333 49 44 chr9 101705421 101705545 -40565899 + L1ME2 LINE L1 5818 5940 -224 1810 173 17 0 chr9 101705756 101706045 -40565399 - AluJo SINE Alu -18 294 1 24 32 0 0 chr9 101706046 101706077 -40565367 + AT_rich Low_complexity Low_complexity 1 31 0 892 203 6 18 chr9 101706081 101706244 -40565200 - AluJo SINE Alu -30 282 122 727 201 83 0 chr9 101706265 101706434 -40565010 - MER33 DNA MER1_type -141 183 1 222 118 0 0 chr9 101706547 101706581 -40564863 + (ATG)n Simple_repeat Simple_repeat 1 34 0 1889 140 27 7 chr9 101706587 101706880 -40564564 - AluJo SINE Alu -13 299 1 270 242 187 0 chr9 101706880 101706971 -40564473 - MIR SINE MIR -1 261 154 258 123 0 35 chr9 101706974 101707031 -40564413 - L1MB3 LINE L1 0 6183 6129 247 280 254 8 chr9 101707397 101707515 -40563929 + MIR SINE MIR 64 210 -52 224 346 0 0 chr9 101707740 101707818 -40563626 - MIR SINE MIR -107 155 78 831 214 91 9 chr9 101708368 101708588 -40562856 + MIR SINE MIR 24 261 -1 2099 145 0 0 chr9 101708733 101709036 -40562408 - AluSx SINE Alu -9 303 1 690 195 45 97 chr9 101709112 101709379 -40562065 - MER112 DNA MER1_type -4 256 4 359 294 72 31 chr9 101710179 101710373 -40561071 + MIR SINE MIR 11 212 -50 223 173 39 0 chr9 101711756 101711808 -40559636 - L2 LINE L2 -19 3253 3200 236 254 15 0 chr9 101712287 101712354 -40559090 + L1ME LINE L1 5717 5784 -337 2347 102 0 13 chr9 101712585 101712900 -40558544 + AluSx SINE Alu 1 311 -1 378 0 0 0 chr9 101712968 101713010 -40558434 + (CA)n Simple_repeat Simple_repeat 2 43 0 469 297 34 11 chr9 101713490 101713665 -40557779 + MIR SINE MIR 84 262 0 215 333 99 9 chr9 101714155 101714266 -40557178 - MIR SINE MIR -61 147 27 8209 138 26 111 chr9 101714752 101716603 -40554841 - pTR5 LTR ERV1 0 2438 745 262 311 106 20 chr9 101716603 101716754 -40554690 - MIR SINE MIR -53 209 46 675 224 62 6 chr9 101717013 101717174 -40554270 + MIR SINE MIR 56 225 -37 194 279 93 0 chr9 101717537 101717623 -40553821 - MIR SINE MIR -122 140 47 180 243 0 0 chr9 101718004 101718041 -40553403 + MER5B DNA MER1_type 3 39 -139 312 240 8 85 chr9 101718097 101718226 -40553218 - MER5A DNA MER1_type -37 152 34 653 301 61 64 chr9 101718236 101718644 -40552800 + L2 LINE L2 2866 3272 0 482 234 139 30 chr9 101719732 101719933 -40551511 - MIR SINE MIR -3 259 37 451 226 44 15 chr9 101720047 101720184 -40551260 - MLT1I LTR MaLR -2 407 267 186 143 0 0 chr9 101720514 101720549 -40550895 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 723 304 8 51 chr9 101721060 101721317 -40550127 - MIR SINE MIR -14 248 3 223 267 153 23 chr9 101721532 101721663 -40549781 - MIR3 SINE MIR -38 170 23 603 245 98 79 chr9 101721817 101722237 -40549207 + L1ME4a LINE L1 5678 6105 -16 242 307 36 51 chr9 101722373 101722510 -40548934 + MIR SINE MIR 3 137 -71 1892 169 16 3 chr9 101723456 101723763 -40547681 - AluJb SINE Alu -1 311 1 2087 99 0 55 chr9 101723801 101724094 -40547350 - AluSx SINE Alu -15 297 21 331 280 29 91 chr9 101724166 101724341 -40547103 - L1MCa LINE L1 -4304 2122 1959 733 214 79 79 chr9 101724406 101724621 -40546823 - MIR SINE MIR -3 259 45 536 213 0 33 chr9 101726017 101726200 -40545244 + C-rich Low_complexity Low_complexity 3 179 0 381 232 250 0 chr9 101726671 101726783 -40544661 - MER103 DNA DNA -1 165 26 229 261 249 51 chr9 101726940 101727197 -40544247 + L3 LINE CR1 1163 1470 -107 233 376 106 18 chr9 101727680 101728010 -40543434 - L2 LINE L2 0 3272 2914 249 365 39 11 chr9 101728093 101728274 -40543170 - L2 LINE L2 -553 2761 2576 * 304 306 78 39 chr9 101728268 101728474 -40542970 - L2 LINE L2 -1325 1989 1776 565 329 152 41 chr9 101729468 101730332 -40541112 + L2 LINE L2 2305 3272 0 190 245 11 21 chr9 101730557 101730651 -40540793 + CT-rich Low_complexity Low_complexity 3 95 0 334 310 40 0 chr9 101730703 101730803 -40540641 + L3 LINE CR1 1352 1455 -122 1933 138 1 16 chr9 101730809 101731355 -40540089 - MER4A LTR ERV1 0 664 1 13529 116 53 37 chr9 101731356 101732561 -40538883 - MER4A-int LTR ERV1 0 6598 5414 2243 113 0 0 chr9 101732561 101732853 -40538591 - AluSq SINE Alu -21 292 1 13529 116 53 37 chr9 101732853 101734208 -40537236 - MER4A-int LTR ERV1 -1184 5414 3997 268 125 0 0 chr9 101734208 101734248 -40537196 - HERVK3 LTR ERVK -7203 40 1 2233 175 26 14 chr9 101734255 101734678 -40536766 - LTR3 LTR ERVK 0 432 5 888 160 5 60 chr9 101734681 101734881 -40536563 - MER4A-int LTR ERV1 -2595 4003 3815 6480 142 54 53 chr9 101734883 101736647 -40534797 - MER4A-int LTR ERV1 -2370 4306 2545 2255 95 40 7 chr9 101736647 101736943 -40534501 - AluSg SINE Alu -4 306 1 6480 142 54 53 chr9 101736943 101737518 -40533926 - MER4A-int LTR ERV1 -4131 2545 189 1312 247 65 11 chr9 101737517 101737869 -40533575 - MER4A-int LTR ERV1 -4107 2224 1854 * 2649 103 191 8 chr9 101738079 101738555 -40532889 - MER4A-int LTR ERV1 -6035 563 1 1881 133 124 23 chr9 101738558 101739108 -40532336 - MER4A LTR ERV1 0 664 1 220 294 109 0 chr9 101739108 101739200 -40532244 + L3 LINE CR1 1458 1559 -18 365 176 0 15 chr9 101740464 101740532 -40530912 + MIR SINE MIR 82 148 -60 221 309 31 21 chr9 101741170 101741267 -40530177 - MIR SINE MIR -59 149 52 205 358 11 0 chr9 101741326 101741421 -40530023 + MIR3 SINE MIR 2 97 -111 259 296 8 72 chr9 101741466 101741591 -40529853 - MER5B DNA MER1_type -3 175 59 800 230 65 94 chr9 101741822 101742269 -40529175 - L1MC5 LINE L1 -76 7885 7452 886 273 81 53 chr9 101742338 101742866 -40528578 + L1ME4a LINE L1 5533 6075 -46 243 146 0 0 chr9 101742917 101742972 -40528472 + (GA)n Simple_repeat Simple_repeat 2 56 0 1969 133 0 64 chr9 101743128 101743458 -40527986 - AluSx SINE Alu -3 309 1 592 207 142 18 chr9 101743587 101743756 -40527688 + MIR SINE MIR 60 249 -13 235 267 222 0 chr9 101744110 101744200 -40527244 - L2 LINE L2 -6 3307 3198 242 185 57 134 chr9 101744497 101744654 -40526790 + MIR3 SINE MIR 6 150 -58 314 331 8 16 chr9 101744789 101744913 -40526531 + MIR SINE MIR 60 182 -80 205 275 206 35 chr9 101745502 101745789 -40525655 - L2 LINE L2 -1 3271 2936 313 337 18 18 chr9 101746287 101746450 -40524994 + L2 LINE L2 2311 2473 -841 329 248 76 45 chr9 101747417 101747574 -40523870 + L1MC5 LINE L1 7752 7913 -48 2009 80 0 15 chr9 101748212 101748474 -40522970 - AluY SINE Alu 0 311 54 458 278 78 25 chr9 101748567 101748760 -40522684 + MIR SINE MIR 20 213 -49 2002 121 108 6 chr9 101749177 101749509 -40521935 + MER47A DNA MER2_type 1 366 0 423 196 37 111 chr9 101749532 101749721 -40521723 - MIR3 SINE MIR 0 208 34 286 222 146 103 chr9 101750510 101750695 -40520749 + L2 LINE L2 2863 3055 -217 454 303 0 0 chr9 101751964 101752086 -40519358 - L3 LINE CR1 -111 1466 1345 34 24 0 0 chr9 101752175 101752216 -40519228 + AT_rich Low_complexity Low_complexity 1 41 0 1449 96 13 35 chr9 101752261 101752314 -40519130 + L1PB1 LINE L1 5921 5974 -177 2232 104 3 10 chr9 101752314 101752611 -40518833 + AluSg SINE Alu 1 295 -15 1449 96 13 35 chr9 101752611 101752786 -40518658 + L1PB1 LINE L1 5974 6144 -7 21 0 0 0 chr9 101752791 101752812 -40518632 + AT_rich Low_complexity Low_complexity 1 21 0 2448 83 0 3 chr9 101753585 101753885 -40517559 + AluSq SINE Alu 1 299 -14 219 294 0 0 chr9 101755562 101755613 -40515831 - L3 LINE CR1 -2 1575 1525 31 44 0 0 chr9 101755701 101755746 -40515698 + AT_rich Low_complexity Low_complexity 1 45 0 471 278 36 137 chr9 101755793 101756146 -40515298 - HAL1 LINE L1 -788 1719 1497 1999 109 88 0 chr9 101756146 101756431 -40515013 - AluSg SINE Alu 0 310 1 471 278 36 137 chr9 101756431 101756907 -40514537 - HAL1 LINE L1 -1010 1497 974 258 32 0 0 chr9 101758530 101758561 -40512883 + (A)n Simple_repeat Simple_repeat 1 31 0 193 313 75 0 chr9 101759180 101759260 -40512184 + L2 LINE L2 3169 3254 -18 211 185 296 12 chr9 101759427 101759508 -40511936 + MIR SINE MIR 49 152 -110 204 231 19 0 chr9 101759591 101759643 -40511801 + CT-rich Low_complexity Low_complexity 2 54 0 907 147 0 0 chr9 101761380 101761509 -40509935 + FLAM_C SINE Alu 1 129 -4 23 0 0 0 chr9 101761514 101761537 -40509907 + AT_rich Low_complexity Low_complexity 1 23 0 243 294 82 93 chr9 101761538 101761926 -40509518 - L2 LINE L2 -79 3193 2810 371 243 75 29 chr9 101762035 101762200 -40509244 + L1ME LINE L1 5461 5616 -505 2309 124 0 0 chr9 101763172 101763479 -40507965 + AluSg SINE Alu 1 307 -3 821 164 0 8 chr9 101764628 101764762 -40506682 - AluJb SINE Alu -179 133 1 928 165 6 24 chr9 101766139 101766309 -40505135 - L1MB7 LINE L1 -15 6169 6003 221 377 66 0 chr9 101766463 101766585 -40504859 + L2 LINE L2 3143 3272 0 23 0 0 0 chr9 101766610 101766633 -40504811 + AT_rich Low_complexity Low_complexity 1 23 0 228 238 71 60 chr9 101766848 101766932 -40504512 - L2 LINE L2 0 3272 3188 551 240 261 34 chr9 101768848 101769173 -40502271 - MLT1J2 LTR MaLR -9 440 39 439 329 13 38 chr9 101769269 101769427 -40502017 + MIR3 SINE MIR 52 205 -3 940 226 48 1 chr9 101769497 101769729 -40501715 - MIR SINE MIR -20 242 3 348 186 0 0 chr9 101770131 101770190 -40501254 + MER91 DNA MER1_type 131 189 -1 512 215 208 7 chr9 101770243 101770387 -40501057 + MER5A DNA MER1_type 11 183 -6 1995 135 58 25 chr9 101770388 101770751 -40500693 - THE1C LTR MaLR 0 375 1 398 351 54 17 chr9 101772410 101772463 -40498981 - MIR SINE MIR -3 259 209 267 31 0 0 chr9 101772463 101772495 -40498949 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1688 45 0 0 chr9 101772495 101772697 -40498747 - L1PA4 LINE L1 -10 6145 5944 398 351 54 17 chr9 101772697 101772890 -40498554 - MIR SINE MIR -52 210 4 457 270 26 21 chr9 101773296 101773470 -40497974 + MIR SINE MIR 25 192 -68 399 292 58 26 chr9 101774257 101774401 -40497043 - MIR SINE MIR -59 149 33 556 246 9 0 chr9 101774584 101774698 -40496746 - L2 LINE L2 -2 3311 3197 303 307 22 44 chr9 101774978 101775115 -40496329 - MIR3 SINE MIR -7 201 68 228 322 56 79 chr9 101776627 101776841 -40494603 - L2 LINE L2 -1 3271 3063 516 206 191 0 chr9 101776859 101776985 -40494459 + MER5A DNA MER1_type 40 189 0 749 265 11 22 chr9 101779822 101780007 -40491437 + MIR3 SINE MIR 22 204 -4 4457 136 30 29 chr9 101780482 101781270 -40490174 - L1MB7 LINE L1 -16 6168 5380 934 246 30 13 chr9 101781427 101781663 -40489781 - MIR SINE MIR -13 249 10 569 264 52 119 chr9 101781845 101782265 -40489179 - MLT1K LTR MaLR -15 573 182 571 261 5 64 chr9 101782569 101782757 -40488687 - MIR SINE MIR -50 212 36 399 283 61 47 chr9 101783187 101783398 -40488046 - MIR SINE MIR -49 213 5 369 195 41 89 chr9 101783490 101783613 -40487831 - MLT1K LTR MaLR 0 588 472 231 61 0 0 chr9 101784168 101784201 -40487243 + (TA)n Simple_repeat Simple_repeat 1 33 0 1568 162 0 35 chr9 101784225 101784515 -40486929 - AluJb SINE Alu -32 280 1 1776 172 23 3 chr9 101784550 101784853 -40486591 + AluJb SINE Alu 4 312 0 310 340 86 6 chr9 101786418 101786580 -40484864 + MIR3 SINE MIR 15 189 -19 317 226 183 9 chr9 101786620 101786735 -40484709 - MIR SINE MIR -71 191 57 525 324 123 42 chr9 101787062 101787346 -40484098 - L2 LINE L2 0 3272 2966 463 371 105 8 chr9 101787460 101787851 -40483593 - L2 LINE L2 -474 2840 2412 183 327 296 7 chr9 101788335 101788784 -40482660 - L2 LINE L2 -952 2362 1784 381 249 54 83 chr9 101788833 101789038 -40482406 - L1ME4a LINE L1 -4 6117 5919 325 259 35 12 chr9 101789025 101789110 -40482334 - HAL1b LINE L1 -24 1324 1238 * 228 86 0 0 chr9 101790533 101790568 -40480876 + (T)n Simple_repeat Simple_repeat 1 35 0 448 251 194 17 chr9 101790572 101790747 -40480697 + L3 LINE CR1 1369 1574 -3 255 282 47 0 chr9 101791098 101791183 -40480261 + MIR SINE MIR 41 129 -133 212 282 0 84 chr9 101791313 101791384 -40480060 - MIR SINE MIR -72 136 85 185 296 19 0 chr9 101792027 101792081 -40479363 - L2 LINE L2 -13 3259 3205 2116 109 10 13 chr9 101792127 101792439 -40479005 + AluSp SINE Alu 1 311 -2 500 265 106 13 chr9 101792748 101792949 -40478495 + MIR SINE MIR 18 239 -23 564 316 53 88 chr9 101793041 101793509 -40477935 - L2 LINE L2 -8 3264 2813 430 264 61 81 chr9 101795063 101795260 -40476184 - MIR SINE MIR -61 201 9 429 20 0 0 chr9 101796993 101797043 -40474401 + (TG)n Simple_repeat Simple_repeat 2 51 0 237 303 13 72 chr9 101797119 101797271 -40474173 - MLT1K LTR MaLR -231 357 215 3016 136 48 92 chr9 101797524 101797635 -40473809 + LTR9 LTR ERV1 1 115 -497 2315 98 0 0 chr9 101797635 101797940 -40473504 - AluSc SINE Alu -2 307 3 3016 136 48 92 chr9 101797940 101798468 -40472976 + LTR9 LTR ERV1 115 612 0 361 235 86 175 chr9 101798950 101799184 -40472260 + MIR SINE MIR 46 258 -4 1104 149 6 0 chr9 101799825 101799999 -40471445 - AluJo SINE Alu -9 303 129 221 194 0 16 chr9 101800001 101800063 -40471381 + (TA)n Simple_repeat Simple_repeat 1 61 0 563 187 0 0 chr9 101800064 101800155 -40471289 - AluJo SINE Alu -190 122 32 1093 244 126 39 chr9 101800311 101800701 -40470743 - LTR16C LTR ERVL 0 491 68 398 271 125 61 chr9 101801543 101801679 -40469765 + HAL1b LINE L1 219 345 -1003 644 195 8 0 chr9 101801679 101801797 -40469647 + FLAM_A SINE Alu 5 123 -10 204 40 0 0 chr9 101801804 101801829 -40469615 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 398 271 125 61 chr9 101801829 101802189 -40469255 + HAL1b LINE L1 350 608 -740 359 208 92 39 chr9 101802451 101802581 -40468863 - MER113 DNA MER1_type? -384 137 1 677 311 98 10 chr9 101803273 101803579 -40467865 - LTR16C LTR ERVL -7 484 152 543 248 78 81 chr9 101803915 101804274 -40467170 + L1M4 LINE L1 3132 3489 -2657 2355 46 0 23 chr9 101804287 101804589 -40466855 + AluY SINE Alu 1 295 -16 445 305 63 38 chr9 101804943 101805182 -40466262 - L2 LINE L2 -55 3258 3014 1541 162 7 45 chr9 101805376 101805685 -40465759 + AluJo SINE Alu 1 297 -15 364 299 169 19 chr9 101805790 101805997 -40465447 - LTR33A LTR ERVL -181 342 105 393 298 122 35 chr9 101807021 101807321 -40464123 - L2 LINE L2 -260 3053 2743 673 274 51 9 chr9 101807550 101807765 -40463679 - L2 LINE L2 -588 2726 2503 289 356 0 0 chr9 101807887 101807977 -40463467 + L2 LINE L2 3180 3269 -3 2019 179 19 47 chr9 101808068 101808497 -40462947 + MER47B DNA MER2_type 1 417 -1 2075 121 7 3 chr9 101808538 101808844 -40462600 + AluSq SINE Alu 3 309 -4 525 255 74 126 chr9 101809535 101810146 -40461298 - MLT1K LTR MaLR 0 588 10 500 267 48 30 chr9 101810696 101810861 -40460583 - MIR3 SINE MIR -6 202 35 1017 247 117 53 chr9 101811313 101811767 -40459677 + LTR33 LTR ERVL 39 521 0 233 238 48 0 chr9 101812693 101812777 -40458667 + (TA)n Simple_repeat Simple_repeat 1 88 0 255 275 83 9 chr9 101813047 101813156 -40458288 - L1ME3 LINE L1 -86 6076 5960 1613 201 56 114 chr9 101813486 101814176 -40457268 - LTR8A LTR ERV1 0 727 1 753 197 52 130 chr9 101814438 101814707 -40456737 - MER112 DNA MER1_type -11 249 2 237 219 158 24 chr9 101814871 101814953 -40456491 + MLT1K LTR MaLR 139 231 -357 2126 91 0 3 chr9 101815790 101816097 -40455347 + AluSx SINE Alu 1 306 0 370 248 127 0 chr9 101817721 101817859 -40453585 + MER20B DNA MER1_type 62 218 -1 341 262 74 98 chr9 101817865 101818109 -40453335 + MLT1K LTR MaLR 211 448 -140 1577 169 10 24 chr9 101818212 101818508 -40452936 + AluJb SINE Alu 1 292 -20 183 327 36 0 chr9 101818680 101818735 -40452709 - MIR SINE MIR -115 93 37 1441 117 5 9 chr9 101819163 101819385 -40452059 - AluSg/x SINE Alu -13 299 79 306 309 45 92 chr9 101821117 101821228 -40450216 + L1M4 LINE L1 2510 2625 -3521 232 167 0 21 chr9 101821228 101821276 -40450168 + (CA)n Simple_repeat Simple_repeat 2 48 0 306 309 45 92 chr9 101821276 101821454 -40449990 + L1M4 LINE L1 2625 2830 -3316 254 48 71 0 chr9 101821463 101821505 -40449939 + A-rich Low_complexity Low_complexity 2 46 0 413 254 128 83 chr9 101821837 101822258 -40449186 + L1MEd LINE L1 180 619 -5586 1435 123 36 64 chr9 101822288 101822578 -40448866 + AluSx SINE Alu 40 322 0 2302 224 43 28 chr9 101822650 101823325 -40448119 + L1M4 LINE L1 4403 5087 -1059 1283 199 92 7 chr9 101823314 101823595 -40447849 + L1MC1 LINE L1 6029 6333 0 * 676 300 19 16 chr9 101823595 101823923 -40447521 + L1MEd LINE L1 1465 1694 -4521 6268 50 25 11 chr9 101823941 101824693 -40446751 + L1PA7 LINE L1 5379 6141 -13 207 0 0 0 chr9 101824697 101824720 -40446724 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 299 190 17 0 chr9 101824720 101824778 -40446666 + MSTB LTR MaLR 45 103 -323 1196 242 114 40 chr9 101824786 101824968 -40446476 + MLT1H LTR MaLR 11 178 -412 1931 159 0 10 chr9 101824968 101825276 -40446168 - AluJb SINE Alu -7 305 1 1196 242 114 40 chr9 101825276 101825575 -40445869 + MLT1H LTR MaLR 178 572 -18 778 274 65 70 chr9 101825790 101826235 -40445209 - MLT1J LTR MaLR -64 447 5 239 242 283 8 chr9 101826327 101826447 -40444997 + MIR3 SINE MIR 18 170 -38 243 316 184 7 chr9 101826507 101826659 -40444785 - MIR SINE MIR -55 207 29 498 273 32 37 chr9 101826743 101826930 -40444514 + MER5A DNA MER1_type 1 186 -3 355 253 39 110 chr9 101827208 101827390 -40444054 - MIR SINE MIR -12 250 82 3067 253 96 19 chr9 101829188 101830405 -40441039 + L1M4 LINE L1 3151 4461 -1685 1876 198 14 11 chr9 101830589 101830953 -40440491 + MLT1A1 LTR MaLR 1 365 0 1318 235 72 61 chr9 101830953 101831432 -40440012 + L1M4b LINE L1 393 950 -5909 275 246 0 0 chr9 101831452 101831509 -40439935 + L1M4b LINE L1 5 61 -6798 6617 131 9 11 chr9 101831614 101832592 -40438852 + MER83-int LTR ERV1 3306 4281 -4 2284 103 70 3 chr9 101832593 101832923 -40438521 + MER83 LTR ERV1 1 352 -96 2200 228 20 28 chr9 101833023 101833979 -40437465 + Tigger5 DNA MER2_type 381 1292 -1031 756 192 0 0 chr9 101833997 101834122 -40437322 - LTR69 LTR ERVL -56 532 408 216 182 45 0 chr9 101834226 101834270 -40437174 + L2 LINE L2 3268 3313 0 4076 139 20 4 chr9 101834437 101834991 -40436453 + L1 LINE L1 4071 4640 -1506 1607 155 0 88 chr9 101834991 101835334 -40436110 + AluSx SINE Alu 10 312 0 4076 139 20 4 chr9 101835334 101835479 -40435965 + L1 LINE L1 4640 4781 -1365 474 301 129 21 chr9 101835826 101836112 -40435332 + L3 LINE CR1 1178 1494 -83 3588 48 0 2 chr9 101836689 101837108 -40434336 - HERVK11 LTR ERVK -1560 6393 5976 3914 64 12 13 chr9 101837108 101837719 -40433725 - MER11A LTR ERVK -554 682 1 804 183 0 8 chr9 101837797 101837928 -40433516 - FRAM SINE Alu -21 155 26 1373 170 89 7 chr9 101837928 101838210 -40433234 + L1M4 LINE L1 5256 5560 -614 5304 114 103 28 chr9 101838573 101839657 -40431787 - MER11A LTR ERVK 0 1266 1 1565 48 5 0 chr9 101839657 101839843 -40431601 - HERVK11 LTR ERVK 0 7953 7767 583 155 0 0 chr9 101839943 101840027 -40431417 - AluJ/FLAM SINE Alu -227 85 2 416 253 0 0 chr9 101840029 101840108 -40431336 - Tigger7 DNA MER2_type -612 93 15 344 308 36 0 chr9 101840564 101840691 -40430753 + MIR SINE MIR 38 167 -62 347 83 0 0 chr9 101841135 101841183 -40430261 + AluY SINE Alu 1 48 -253 224 224 0 59 chr9 101842456 101842541 -40428903 + GA-rich Low_complexity Low_complexity 1 80 0 204 304 0 0 chr9 101842856 101842925 -40428519 + A-rich Low_complexity Low_complexity 1 69 0 2138 69 0 0 chr9 101843317 101843577 -40427867 + AluY SINE Alu 42 301 -10 809 216 0 20 chr9 101843577 101843730 -40427714 - FRAM SINE Alu -34 142 1 13198 45 76 5 chr9 101843842 101845534 -40425910 - L1P LINE L1 -3906 2240 429 2578 249 132 22 chr9 101845636 101847130 -40424314 - L1ME LINE L1 -490 5674 3996 536 283 50 18 chr9 101847109 101847328 -40424116 - L1ME LINE L1 -3653 2493 2268 * 230 179 26 0 chr9 101847429 101847468 -40423976 - Charlie3 DNA MER1_type -2640 70 31 1040 173 47 28 chr9 101847470 101847724 -40423720 + MER63B DNA MER1_type 42 300 -136 1118 198 103 38 chr9 101847725 101848044 -40423400 - L1MB8 LINE L1 -6 6172 5833 15923 29 1 0 chr9 101848059 101849927 -40421517 - L1MB8 LINE L1 -745 5401 3560 666 139 0 10 chr9 101851992 101852093 -40419351 + MLT1B LTR MaLR 291 390 0 313 260 214 23 chr9 101852169 101852507 -40418937 - L2 LINE L2 -110 3203 2756 245 53 0 53 chr9 101852534 101852572 -40418872 + L2 LINE L2 2757 2792 -522 315 326 10 0 chr9 101853290 101853388 -40418056 - L2 LINE L2 -29 3284 3186 587 168 24 32 chr9 101853595 101853720 -40417724 - MER96B DNA MER1_type? -103 314 191 278 156 22 0 chr9 101853867 101853912 -40417532 + MER77 LTR ERV1 1 46 -559 1169 138 6 135 chr9 101854853 101854891 -40416553 - L1MA8 LINE L1 -158 6133 6092 2126 120 3 7 chr9 101854891 101855190 -40416254 + AluSx SINE Alu 1 298 -14 1169 138 6 135 chr9 101855190 101855463 -40415981 - L1MA8 LINE L1 -199 6092 5862 432 299 0 0 chr9 101855454 101855591 -40415853 + L1M4c LINE L1 1329 1465 -4919 * 7679 230 39 16 chr9 101855687 101857458 -40413986 - L1M3de LINE L1 -4516 2137 619 323 247 67 72 chr9 101857634 101857828 -40413616 - MIR SINE MIR -56 206 14 982 219 5 10 chr9 101858538 101858739 -40412705 - AluJo SINE Alu -17 295 96 2234 109 0 0 chr9 101858784 101859078 -40412366 - AluSx SINE Alu -18 294 1 444 372 67 27 chr9 101859174 101859577 -40411867 + L2 LINE L2 388 806 -2508 2035 171 48 50 chr9 101859589 101859986 -40411458 + MSTD LTR MaLR 1 396 0 641 352 157 48 chr9 101860328 101861550 -40409894 + L2 LINE L2 1610 2965 -349 206 352 57 0 chr9 101861822 101861927 -40409517 + MIR SINE MIR 30 140 -68 700 160 154 57 chr9 101862141 101862316 -40409128 + MLT1A1 LTR MaLR 1 192 -173 5493 123 12 7 chr9 101862316 101863181 -40408263 + L1M1 LINE L1 2044 2912 -4653 1834 164 3 3 chr9 101863634 101863920 -40407524 + AluJb SINE Alu 3 288 -24 319 316 20 0 chr9 101864093 101864191 -40407253 - L2 LINE L2 -21 3292 3193 267 200 60 0 chr9 101864202 101864252 -40407192 + MER5A DNA MER1_type 45 97 -92 628 319 65 19 chr9 101864308 101864738 -40406706 + L2 LINE L2 1783 2232 -1082 180 154 62 15 chr9 101865045 101865110 -40406334 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 282 294 129 0 chr9 101865131 101865216 -40406228 + MIR SINE MIR 142 237 -25 289 353 65 7 chr9 101866082 101866235 -40405209 - L3 LINE CR1 -117 1460 1299 226 277 0 12 chr9 101866294 101866377 -40405067 + (AATAG)n Simple_repeat Simple_repeat 2 83 0 340 307 56 28 chr9 101866524 101866703 -40404741 - L3 LINE CR1 -311 1266 1083 342 266 32 82 chr9 101867243 101867401 -40404043 - MIR SINE MIR -56 152 3 208 261 245 10 chr9 101869222 101869342 -40402102 - MIR SINE MIR -64 144 15 439 316 58 0 chr9 101869986 101870125 -40401319 + MIR SINE MIR 41 187 -75 1307 310 117 24 chr9 101870507 101871356 -40400088 + L2 LINE L2 2370 3286 -27 496 310 86 5 chr9 101871740 101871927 -40399517 - MIR SINE MIR -8 254 53 210 143 0 0 chr9 101873084 101873119 -40398325 + (A)n Simple_repeat Simple_repeat 1 35 0 2015 115 3 21 chr9 101873244 101873569 -40397875 + AluSp SINE Alu 1 320 0 24 0 0 0 chr9 101873843 101873867 -40397577 + AT_rich Low_complexity Low_complexity 1 24 0 399 307 55 16 chr9 101874046 101874173 -40397271 + MIR3 SINE MIR 12 143 -65 215 254 36 0 chr9 101874198 101874253 -40397191 - MIR SINE MIR -89 173 117 346 290 82 57 chr9 101874913 101875192 -40396252 + L2 LINE L2 2991 3276 -37 289 257 31 37 chr9 101875418 101875516 -40395928 + MIR SINE MIR 96 189 -63 700 88 8 80 chr9 101875580 101875631 -40395813 - L1MB3 LINE L1 -2 6181 6128 2378 98 3 0 chr9 101875631 101875936 -40395508 - AluSg SINE Alu -4 306 1 700 88 8 80 chr9 101875936 101876009 -40395435 - L1MB3 LINE L1 -55 6128 6066 276 325 140 0 chr9 101876124 101876238 -40395206 - MIR3 SINE MIR -35 173 44 600 233 59 102 chr9 101876275 101876511 -40394933 + MLT1C LTR MaLR 240 465 -2 329 267 32 80 chr9 101876566 101876753 -40394691 - MIR SINE MIR -74 188 11 2206 86 0 30 chr9 101877243 101877546 -40393898 + AluSg SINE Alu 1 294 -16 228 274 19 38 chr9 101877933 101878039 -40393405 + MLT1J LTR MaLR 395 498 -13 249 33 0 0 chr9 101878086 101878116 -40393328 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1085 242 52 4 chr9 101878119 101878388 -40393056 - AluJo SINE Alu -30 282 1 288 0 0 0 chr9 101879215 101879247 -40392197 + (CA)n Simple_repeat Simple_repeat 1 32 0 240 86 0 0 chr9 101879247 101879282 -40392162 + (GA)n Simple_repeat Simple_repeat 1 35 0 4064 153 26 16 chr9 101879282 101879622 -40391822 + L1MB2 LINE L1 5476 5811 -360 912 215 142 65 chr9 101879622 101879961 -40391483 + MLT1A1 LTR MaLR 1 365 0 4064 153 26 16 chr9 101879961 101880302 -40391142 + L1MB2 LINE L1 5811 6164 -7 368 240 0 48 chr9 101880345 101880449 -40390995 - MER5B DNA MER1_type -3 175 77 3056 110 16 11 chr9 101880521 101880968 -40390476 - L1PA16 LINE L1 0 6166 5718 219 329 17 35 chr9 101881018 101881136 -40390308 + MIR SINE MIR 19 129 -79 * 237 333 0 0 chr9 101881126 101881192 -40390252 + L2 LINE L2 3248 3313 0 356 278 0 22 chr9 101881338 101881428 -40390016 - MIR3 SINE MIR -28 180 93 286 269 52 52 chr9 101881999 101882133 -40389311 - L2 LINE L2 0 3272 3139 950 263 13 4 chr9 101882235 101882467 -40388977 + MIR SINE MIR 4 237 -25 188 264 0 19 chr9 101882437 101882490 -40388954 + L2 LINE L2 3213 3264 -8 * 198 121 0 30 chr9 101882484 101882517 -40388927 + L2 LINE L2 3192 3223 -90 309 295 53 53 chr9 101882564 101882754 -40388690 + L1MEd LINE L1 97 286 -5919 237 210 0 0 chr9 101882799 101882861 -40388583 + (ATG)n Simple_repeat Simple_repeat 1 62 0 707 255 52 75 chr9 101884155 101884422 -40387022 + MIR SINE MIR 2 262 0 239 304 0 0 chr9 101884551 101884607 -40386837 - L2 LINE L2 -215 3057 3002 300 244 32 4 chr9 101885121 101885248 -40386196 + MER91A DNA MER1_type 1 178 -12 461 217 0 0 chr9 101885255 101885352 -40386092 + L1MC4 LINE L1 6439 6544 -1460 988 226 100 2 chr9 101885353 101885786 -40385658 + L1MC4 LINE L1 7531 8042 0 236 246 16 57 chr9 101885827 101885949 -40385495 + L1PBa LINE L1 2566 2682 -4181 3534 278 59 15 chr9 101886045 101886138 -40385306 + L1MEd LINE L1 2032 2119 -4096 189 0 0 0 chr9 101886138 101886159 -40385285 + (TAA)n Simple_repeat Simple_repeat 3 23 0 3534 278 59 15 chr9 101886159 101887725 -40383719 + L1MEd LINE L1 2119 3730 -2485 289 313 30 30 chr9 101887799 101887933 -40383511 - L3 LINE CR1 -132 1445 1312 212 236 22 146 chr9 101888052 101888141 -40383303 + L2 LINE L2 3181 3258 -14 274 271 133 133 chr9 101888739 101889093 -40382351 + L2 LINE L2 2866 3219 -53 450 215 131 0 chr9 101889314 101889421 -40382023 - L2 LINE L2 0 3313 3193 372 172 0 65 chr9 101890242 101890264 -40381180 + L1MB3 LINE L1 6063 6085 -98 1939 185 39 14 chr9 101890264 101890620 -40380824 + MLT1A1 LTR MaLR 1 365 0 372 172 0 65 chr9 101890620 101890690 -40380754 + L1MB3 LINE L1 6085 6149 -34 435 286 0 0 chr9 101890852 101890957 -40380487 - MIR SINE MIR -106 156 52 806 143 40 74 chr9 101891933 101892108 -40379336 + L1MB2 LINE L1 5996 6164 -7 274 369 5 46 chr9 101892631 101892848 -40378596 + L3 LINE CR1 787 994 -583 1143 221 9 0 chr9 101892854 101893071 -40378373 - MER58A DNA MER1_type -5 219 1 287 326 163 16 chr9 101893201 101893446 -40377998 - L3 LINE CR1 -977 600 320 403 308 161 60 chr9 101893531 101893830 -40377614 + MER102a DNA MER1_type 1 329 -1 188 339 62 51 chr9 101893842 101894037 -40377407 - L3 LINE CR1 -1374 203 7 772 277 97 1 chr9 101895892 101896320 -40375124 - LTR33 LTR ERVL -6 515 25 525 223 30 48 chr9 101897042 101897181 -40374263 + L1MEd LINE L1 4286 4423 -1792 2450 66 0 3 chr9 101897181 101897483 -40373961 + AluY SINE Alu 1 301 -10 525 223 30 48 chr9 101897483 101897509 -40373935 + L1MEd LINE L1 4423 4448 -1767 13185 154 18 8 chr9 101897613 101901013 -40370431 + L1MA3 LINE L1 2870 6305 0 195 256 0 0 chr9 101901106 101901149 -40370295 - L2 LINE L2 -556 2758 2716 336 242 21 11 chr9 101901176 101901271 -40370173 + MLT-int LTR MaLR 585 680 -1055 381 269 0 0 chr9 101901401 101901479 -40369965 + MLT-int LTR MaLR 907 984 -751 * 3071 198 85 7 chr9 101901464 101902064 -40369380 + MLT1A1-int LTR MaLR 1089 1735 0 1541 179 91 51 chr9 101902064 101902415 -40369029 + MLT1A1 LTR MaLR 1 365 0 536 240 15 8 chr9 101903076 101903226 -40368218 + MIR SINE MIR 21 175 -62 214 200 0 20 chr9 101903230 101903280 -40368164 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 216 339 172 33 chr9 101903393 101903915 -40367529 - L2 LINE L2 -437 2877 2283 38783 39 29 1 chr9 101905782 101910501 -40360943 - L1P LINE L1 -1297 4849 2 424 215 0 0 chr9 101910527 101910606 -40360838 - MER116 DNA Mariner 0 80 2 2137 110 10 0 chr9 101910649 101910940 -40360504 + AluSq SINE Alu 1 294 -19 1605 222 51 94 chr9 101910995 101911582 -40359862 + MLT1F1 LTR MaLR 1 567 0 261 333 76 23 chr9 101911724 101911895 -40359549 + MIR SINE MIR 21 200 -62 192 346 0 0 chr9 101911968 101912020 -40359424 - MIR SINE MIR -160 102 51 398 271 21 10 chr9 101912055 101912151 -40359293 + MIR3 SINE MIR 91 187 -21 385 316 12 30 chr9 101913381 101913549 -40357895 + MIR SINE MIR 28 192 -70 706 182 26 65 chr9 101913588 101913742 -40357702 + MER58B DNA MER1_type 13 160 -181 238 192 27 14 chr9 101913742 101913815 -40357629 + (TA)n Simple_repeat Simple_repeat 2 75 0 706 206 82 18 chr9 101913853 101914072 -40357372 + MER58B DNA MER1_type 104 336 -5 829 313 46 26 chr9 101914471 101914928 -40356516 + L1ME LINE L1 5351 5816 -305 2169 112 0 0 chr9 101915098 101915404 -40356040 - AluSg SINE Alu 0 310 5 641 228 55 14 chr9 101916958 101917103 -40354341 - MIR SINE MIR -91 171 21 234 345 17 52 chr9 101917563 101917679 -40353765 - MIR SINE MIR -57 151 40 230 0 0 0 chr9 101918664 101918691 -40352753 - Alu SINE Alu -12 289 263 248 325 79 8 chr9 101919349 101919475 -40351969 + MIR3 SINE MIR 12 146 -62 538 224 178 17 chr9 101919568 101919742 -40351702 + MIR SINE MIR 47 248 -14 892 331 67 54 chr9 101920974 101921642 -40349802 - L3 LINE CR1 -10 1567 891 285 29 0 0 chr9 101922514 101922548 -40348896 + (CA)n Simple_repeat Simple_repeat 1 34 0 228 356 93 8 chr9 101923142 101923260 -40348184 - MIR SINE MIR -65 143 16 239 301 184 0 chr9 101923402 101923505 -40347939 - L2 LINE L2 -8 3264 3143 183 147 29 0 chr9 101923628 101923662 -40347782 - L2 LINE L2 -209 3063 3029 4980 192 27 36 chr9 101924319 101925841 -40345603 + L1MB1 LINE L1 4263 5790 -378 302 136 0 0 chr9 101925864 101925930 -40345514 - L1 LINE L1 -837 5309 5244 353 22 22 0 chr9 101925937 101925983 -40345461 + (GA)n Simple_repeat Simple_repeat 1 47 0 1263 141 15 0 chr9 101925983 101926181 -40345263 + L1MB1 LINE L1 5797 5997 -171 246 315 67 12 chr9 101926395 101926560 -40344884 - L1ME4a LINE L1 -81 6040 5867 483 364 37 5 chr9 101926564 101926751 -40344693 - L2 LINE L2 0 3272 3080 905 295 108 23 chr9 101926815 101927212 -40344232 + MLT1J LTR MaLR 81 511 0 924 319 146 33 chr9 101927215 101928035 -40343409 - L2 LINE L2 -464 2850 1938 326 329 91 41 chr9 101928923 101929122 -40342322 + MIR3 SINE MIR 15 221 -41 648 251 73 6 chr9 101929174 101929353 -40342091 - MIR SINE MIR -16 246 56 254 317 10 30 chr9 101929475 101929576 -40341868 + MIR SINE MIR 162 260 -2 509 245 33 41 chr9 101929585 101929742 -40341702 - MIR SINE MIR -63 145 3 317 362 43 27 chr9 101930266 101930454 -40340990 - MIR SINE MIR -70 192 2 320 185 12 49 chr9 101930885 101930966 -40340478 - MIR3 SINE MIR -25 183 106 484 348 100 31 chr9 101931856 101932276 -40339168 - L2 LINE L2 -10 3262 2814 26 0 0 0 chr9 101932399 101932425 -40339019 + AT_rich Low_complexity Low_complexity 1 26 0 1043 208 75 16 chr9 101932447 101932702 -40338742 - L1ME1 LINE L1 0 6166 5897 303 338 112 30 chr9 101932807 101933076 -40338368 - L3 LINE CR1 -942 635 345 799 250 58 45 chr9 101933621 101933929 -40337515 - L1MC4a LINE L1 -152 5969 5658 21 0 0 0 chr9 101934186 101934207 -40337237 + AT_rich Low_complexity Low_complexity 1 21 0 410 342 15 36 chr9 101934570 101934766 -40336678 + MIR3 SINE MIR 17 208 0 286 305 24 0 chr9 101935665 101935747 -40335697 + L2 LINE L2 3188 3271 -42 251 226 87 96 chr9 101935747 101935862 -40335582 - MIR SINE MIR -63 199 86 266 274 210 19 chr9 101936592 101936749 -40334695 + MIR SINE MIR 20 206 -56 893 226 47 17 chr9 101936805 101937040 -40334404 + MIR SINE MIR 20 261 -1 201 283 28 19 chr9 101937783 101937889 -40333555 + MIR SINE MIR 101 207 -55 282 95 0 0 chr9 101938470 101938512 -40332932 + (TG)n Simple_repeat Simple_repeat 2 43 0 250 312 43 21 chr9 101939255 101939396 -40332048 + L2 LINE L2 3006 3149 -164 1330 204 78 7 chr9 101939404 101939698 -40331746 - MLT1D LTR MaLR -1 504 190 400 82 0 0 chr9 101939705 101939754 -40331690 - AluJb SINE Alu -22 290 242 834 134 0 8 chr9 101939754 101939881 -40331563 - AluJb SINE Alu -169 143 18 932 210 21 16 chr9 101939881 101940067 -40331377 - MLT1D LTR MaLR -318 187 1 535 295 47 0 chr9 101940076 101940225 -40331219 + L2 LINE L2 3158 3313 0 2332 117 0 0 chr9 101940328 101940636 -40330808 - AluSx SINE Alu -4 308 1 252 0 0 0 chr9 101940694 101940722 -40330722 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 403 212 167 15 chr9 101940728 101940860 -40330584 - MER103 DNA DNA -7 159 8 187 217 0 48 chr9 101940968 101941051 -40330393 + CT-rich Low_complexity Low_complexity 2 80 0 206 0 0 65 chr9 101941356 101941387 -40330057 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 319 257 250 14 chr9 101941764 101941912 -40329532 - MIR SINE MIR -51 211 29 189 305 120 70 chr9 101941941 101942141 -40329303 - MIR SINE MIR 0 262 53 452 245 69 19 chr9 101942461 101942620 -40328824 - L3b LINE CR1 -136 1447 1281 261 304 101 0 chr9 101943723 101943802 -40327642 + L2 LINE L2 3186 3272 0 294 296 141 33 chr9 101943874 101944178 -40327266 + L2 LINE L2 2634 2970 -344 282 119 0 0 chr9 101944226 101944268 -40327176 - MADE1 DNA Mariner 0 80 39 531 322 54 29 chr9 101944269 101944508 -40326936 + L2 LINE L2 3028 3272 0 278 274 97 26 chr9 101945814 101945927 -40325517 + MIR SINE MIR 45 165 -97 256 204 0 0 chr9 101945935 101945984 -40325460 - MER115 DNA AcHobo -1 692 644 198 353 0 0 chr9 101946400 101946451 -40324993 + MIR SINE MIR 206 256 -6 416 286 0 96 chr9 101946770 101946805 -40324639 + MIR SINE MIR 47 84 -175 2683 128 62 5 chr9 101946805 101947210 -40324234 - MSTA LTR MaLR 0 428 1 416 286 0 96 chr9 101947210 101947344 -40324100 + MIR SINE MIR 84 197 -62 312 205 45 0 chr9 101947954 101948066 -40323378 + (TA)n Simple_repeat Simple_repeat 1 117 0 711 255 129 8 chr9 101948194 101948576 -40322868 + L1ME4a LINE L1 5687 6110 -11 787 279 119 36 chr9 101949120 101949533 -40321911 - MLT1L LTR MaLR -4 611 165 2382 60 0 0 chr9 101949859 101950191 -40321253 - AluY SINE Alu 0 333 2 222 128 0 0 chr9 101950214 101950253 -40321191 + (CA)n Simple_repeat Simple_repeat 2 40 0 1737 241 104 23 chr9 101950273 101950955 -40320489 - L1MC/D LINE L1 -745 5401 5063 654 150 0 34 chr9 101951001 101951148 -40320296 + (TCCCC)n Simple_repeat Simple_repeat 1 142 0 675 310 95 15 chr9 101951148 101951609 -40319835 - L1MC/D LINE L1 -1131 5015 4518 1649 232 97 30 chr9 101951787 101951907 -40319537 - L1MC4 LINE L1 -1 8041 7930 267 31 0 0 chr9 101951907 101951939 -40319505 + (TC)n Simple_repeat Simple_repeat 1 32 0 450 0 0 0 chr9 101951939 101951989 -40319455 + (TA)n Simple_repeat Simple_repeat 2 51 0 1649 232 97 30 chr9 101951989 101952392 -40319052 - L1MC4 LINE L1 -111 7931 7482 359 271 26 33 chr9 101952601 101952752 -40318692 - L1MC/D LINE L1 -1832 4314 4165 252 0 0 0 chr9 101953431 101953459 -40317985 + (TG)n Simple_repeat Simple_repeat 1 28 0 1029 196 45 0 chr9 101953719 101953898 -40317546 + MER5A DNA MER1_type 1 187 -2 546 194 0 0 chr9 101953952 101954045 -40317399 - L2 LINE L2 -4 3309 3217 1041 292 66 55 chr9 101954125 101955003 -40316441 + L2 LINE L2 2424 3313 0 1709 165 6 48 chr9 101955970 101956286 -40315158 - AluJo SINE Alu -9 303 1 449 285 67 18 chr9 101956719 101956884 -40314560 + MIR3 SINE MIR 30 202 -6 395 176 0 0 chr9 101957939 101958007 -40313437 - L2 LINE L2 0 3313 3246 21 0 0 0 chr9 101958183 101958204 -40313240 + AT_rich Low_complexity Low_complexity 1 21 0 279 339 105 27 chr9 101958311 101958568 -40312876 - L2 LINE L2 -225 3088 2812 1804 172 3 13 chr9 101959283 101959586 -40311858 + AluJo SINE Alu 1 300 -12 842 291 86 40 chr9 101959809 101960355 -40311089 + HAL1b LINE L1 61 631 -717 21 0 0 0 chr9 101960420 101960441 -40311003 + AT_rich Low_complexity Low_complexity 1 21 0 333 282 69 0 chr9 101960452 101960583 -40310861 - MIR SINE MIR 0 262 123 546 16 0 0 chr9 101961042 101961105 -40310339 + (TG)n Simple_repeat Simple_repeat 2 64 0 2207 105 3 35 chr9 101961707 101962022 -40309422 + AluSq SINE Alu 1 305 -8 695 289 188 14 chr9 101963648 101963667 -40307777 - L2 LINE L2 -18 3254 3240 751 230 11 0 chr9 101963667 101963841 -40307603 - MER104 DNA MER2_type -4 176 1 695 289 188 14 chr9 101963841 101964469 -40306975 - L2 LINE L2 -32 3240 2491 35 0 0 0 chr9 101964788 101964823 -40306621 + AT_rich Low_complexity Low_complexity 1 35 0 277 254 157 69 chr9 101964953 101965103 -40306341 + MIR SINE MIR 33 192 -27 294 309 15 73 chr9 101965103 101965239 -40306205 - L2 LINE L2 -4 3268 3141 797 212 66 82 chr9 101965313 101965385 -40306059 - LTR37B LTR ERV1 0 468 396 7156 80 16 0 chr9 101965385 101966778 -40304666 - L1PA13 LINE L1 -5 6158 4756 797 212 66 82 chr9 101966778 101967045 -40304399 - LTR37B LTR ERV1 -72 396 94 2462 66 0 13 chr9 101967203 101967505 -40303939 + AluY SINE Alu 1 298 -13 1546 294 51 18 chr9 101967865 101968358 -40303086 + L1M3b LINE L1 2 510 -5771 1356 282 22 14 chr9 101968483 101968845 -40302599 + L1M3b LINE L1 940 1304 -4977 485 129 0 12 chr9 101968865 101968950 -40302494 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 1662 178 11 0 chr9 101968950 101969214 -40302230 - AluJo SINE Alu -45 267 1 2554 199 40 31 chr9 101973192 101973797 -40297647 + L1ME1 LINE L1 5565 6332 -2 193 290 0 112 chr9 101975349 101975456 -40295988 + MIR SINE MIR 54 148 -60 186 333 14 0 chr9 101975969 101976038 -40295406 - L2 LINE L2 -1022 2292 2223 1272 172 107 8 chr9 101976471 101976732 -40294712 + MLT1F LTR MaLR 236 522 -20 197 278 8 119 chr9 101976847 101976973 -40294471 + MIR SINE MIR 42 153 -55 1839 179 33 41 chr9 101978209 101978577 -40292867 + MLT1A1 LTR MaLR 1 365 0 201 274 12 12 chr9 101978726 101978810 -40292634 + L2 LINE L2 2577 2660 -654 191 301 150 15 chr9 101978871 101979004 -40292440 - MIR SINE MIR -65 197 47 305 299 41 10 chr9 101979125 101979222 -40292222 - MIR SINE MIR -70 138 39 1917 118 0 47 chr9 101979245 101979587 -40291857 - AluSg SINE Alu 0 328 1 29 0 0 0 chr9 101979649 101979678 -40291766 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr9 101979713 101979739 -40291705 + (TG)n Simple_repeat Simple_repeat 1 26 0 1806 225 45 35 chr9 101979742 101980230 -40291214 - MLT1D LTR MaLR -7 498 6 26 30 0 0 chr9 101980250 101980283 -40291161 + AT_rich Low_complexity Low_complexity 1 33 0 412 253 58 39 chr9 101980653 101980807 -40290637 - MLT1I LTR MaLR 0 409 253 236 228 0 0 chr9 101980887 101980944 -40290500 - MLT1I LTR MaLR -268 141 85 1494 253 61 20 chr9 101981087 101981625 -40289819 - HAL1 LINE L1 -105 2402 1843 188 167 0 71 chr9 101981683 101981725 -40289719 + L3 LINE CR1 1526 1564 -13 22 35 0 0 chr9 101985053 101985082 -40286362 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 101985145 101985167 -40286277 + AT_rich Low_complexity Low_complexity 1 22 0 637 160 0 0 chr9 101985410 101985510 -40285934 - Tigger7 DNA MER2_type -6 2481 2382 940 193 158 0 chr9 101985511 101985713 -40285731 - Tigger7 DNA MER2_type -2253 234 1 333 233 0 67 chr9 101985892 101985982 -40285462 - MER5B DNA MER1_type -17 161 78 33 25 0 0 chr9 101986172 101986212 -40285232 + AT_rich Low_complexity Low_complexity 1 40 0 952 245 21 4 chr9 101986298 101986531 -40284913 + MIR SINE MIR 23 259 -3 1904 177 42 17 chr9 101986693 101987049 -40284395 - MLT1A1 LTR MaLR 0 365 1 22 56 0 0 chr9 101987661 101987697 -40283747 + AT_rich Low_complexity Low_complexity 1 36 0 1784 224 35 11 chr9 101988361 101988736 -40282708 - MLT1F LTR MaLR -9 533 150 299 272 156 23 chr9 101988780 101988953 -40282491 + MER117 DNA MER1_type 2 197 0 22 0 0 0 chr9 101989745 101989767 -40281677 + AT_rich Low_complexity Low_complexity 1 22 0 1993 143 0 13 chr9 101990276 101990577 -40280867 - AluJo SINE Alu -15 297 1 229 373 42 14 chr9 101990724 101990866 -40280578 + MER5B DNA MER1_type 3 148 -30 536 263 11 65 chr9 101991492 101991678 -40279766 + MIR SINE MIR 58 233 -29 211 239 0 0 chr9 101991679 101991725 -40279719 + (TTA)n Simple_repeat Simple_repeat 2 47 0 611 85 68 59 chr9 101991949 101992067 -40279377 - MER53 DNA DNA 0 189 71 399 41 0 0 chr9 101992363 101992412 -40279032 + (TG)n Simple_repeat Simple_repeat 2 50 0 189 107 0 0 chr9 101992626 101992654 -40278790 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 422 298 81 6 chr9 101993204 101993365 -40278079 + MIR3 SINE MIR 29 201 -7 377 277 0 0 chr9 101994086 101994187 -40277257 + MER5A DNA MER1_type 9 109 -80 415 252 66 66 chr9 101994203 101994477 -40276967 + L1MEd LINE L1 596 869 -5250 279 350 24 0 chr9 101994561 101994684 -40276760 + L3 LINE CR1 1425 1550 -27 1050 275 136 34 chr9 101995409 101996093 -40275351 - L1ME4a LINE L1 -20 6101 5348 230 312 68 51 chr9 101996301 101996538 -40274906 - L1P LINE L1 -1005 5141 4901 863 288 93 40 chr9 101997839 101998217 -40273227 + MLT1K LTR MaLR 187 584 -4 2416 155 31 14 chr9 101998514 101998933 -40272511 - MSTB LTR MaLR 0 426 1 253 167 83 42 chr9 101998966 101999038 -40272406 + MLT1K LTR MaLR 50 124 -464 384 271 25 17 chr9 101999483 101999601 -40271843 - MER5B DNA MER1_type 0 178 60 2277 117 0 0 chr9 101999634 101999941 -40271503 - AluSg1 SINE Alu -2 307 1 208 227 145 38 chr9 102000096 102000186 -40271258 + MIR SINE MIR 55 152 -65 210 273 0 0 chr9 102000869 102000924 -40270520 + A-rich Low_complexity Low_complexity 1 55 0 419 250 31 16 chr9 102001287 102001415 -40270029 - MIR3 SINE MIR -78 130 1 231 167 0 0 chr9 102001972 102002014 -40269430 + (CTG)n Simple_repeat Simple_repeat 1 42 0 544 296 32 21 chr9 102002078 102002264 -40269180 - MIR SINE MIR -58 204 17 195 315 19 0 chr9 102002297 102002351 -40269093 - L2 LINE L2 -86 3186 3132 248 182 0 0 chr9 102002475 102002519 -40268925 - L2 LINE L2 -222 3050 3007 4609 102 25 11 chr9 102003117 102003823 -40267621 + L1MA4 LINE L1 5585 6300 0 30 27 0 0 chr9 102003900 102003937 -40267507 + AT_rich Low_complexity Low_complexity 1 37 0 1987 108 18 14 chr9 102003957 102004386 -40267058 + AluSc SINE Alu 1 430 0 288 253 25 0 chr9 102004526 102004605 -40266839 - L1ME4a LINE L1 -195 5926 5846 306 293 124 86 chr9 102005568 102005916 -40265528 + L2 LINE L2 2910 3270 -2 225 319 0 0 chr9 102006343 102006415 -40265029 - L2 LINE L2 0 3272 3201 2833 151 26 18 chr9 102006685 102007142 -40264302 + LTR32 LTR ERVL 11 471 0 21 0 0 0 chr9 102007791 102007812 -40263632 + AT_rich Low_complexity Low_complexity 1 21 0 356 281 18 9 chr9 102008290 102008404 -40263040 - MIR3 SINE MIR -8 200 86 213 269 35 91 chr9 102008775 102008969 -40262475 + MIR SINE MIR 17 192 -64 813 315 12 0 chr9 102009325 102009576 -40261868 - MIR SINE MIR 0 262 9 2188 189 97 15 chr9 102009582 102010047 -40261397 - MLT1D LTR MaLR -2 503 1 1381 249 48 66 chr9 102010250 102010584 -40260860 - LTR16C LTR ERVL -2 489 165 3704 70 0 8 chr9 102010584 102011066 -40260378 + L1PA8 LINE L1 5686 6163 -9 1381 249 48 66 chr9 102011066 102011228 -40260216 - LTR16C LTR ERVL -326 165 2 420 314 76 55 chr9 102011702 102012390 -40259054 + L2 LINE L2 1813 2514 -800 300 148 74 0 chr9 102012672 102012726 -40258718 - MLT1D LTR MaLR 0 505 448 198 71 0 0 chr9 102013146 102013174 -40258270 + (TC)n Simple_repeat Simple_repeat 1 28 0 264 333 147 7 chr9 102013485 102013791 -40257653 + L2 LINE L2 2507 2855 -459 269 264 101 56 chr9 102014143 102014321 -40257123 - MIR3 SINE MIR -3 205 20 337 231 120 35 chr9 102014753 102014930 -40256514 - MIR SINE MIR -46 216 30 2405 138 0 10 chr9 102014942 102015326 -40256118 + L1MB3 LINE L1 5802 6181 -2 1126 264 157 25 chr9 102015639 102016124 -40255320 + L2 LINE L2 2080 2628 -686 462 284 41 7 chr9 102016124 102016297 -40255147 + LTR16A1 LTR ERVL 1 179 -271 410 261 107 44 chr9 102016306 102016511 -40254933 + L2 LINE L2 2998 3226 -87 192 40 0 0 chr9 102016511 102016536 -40254908 + (GA)n Simple_repeat Simple_repeat 1 25 0 410 261 107 44 chr9 102016536 102016602 -40254842 + L2 LINE L2 3226 3286 -27 2004 198 49 55 chr9 102016602 102017108 -40254336 - MLT1D LTR MaLR 0 505 3 255 299 167 7 chr9 102017150 102017294 -40254150 - MIR SINE MIR -64 198 32 225 336 64 9 chr9 102017330 102017440 -40254004 + L2 LINE L2 3122 3237 -35 180 111 0 0 chr9 102017443 102017470 -40253974 + (TAG)n Simple_repeat Simple_repeat 1 27 0 402 232 70 50 chr9 102017844 102018040 -40253404 - MIR SINE MIR -41 221 16 407 328 133 43 chr9 102019086 102019531 -40251913 - L2 LINE L2 0 3313 2829 1244 291 71 49 chr9 102019543 102019642 -40251802 - L2 LINE L2 -731 2583 2488 2370 139 40 21 chr9 102019642 102020065 -40251379 + MSTB1 LTR MaLR 1 431 -1 1244 291 71 49 chr9 102020065 102020578 -40250866 - L2 LINE L2 -826 2488 1952 2005 131 7 7 chr9 102020578 102020869 -40250575 + AluSx SINE Alu 1 291 -21 1244 291 71 49 chr9 102020869 102020963 -40250481 - L2 LINE L2 -1362 1952 1861 431 228 49 68 chr9 102021110 102021126 -40250318 - LTR67 LTR ERVL -8 549 534 180 0 0 0 chr9 102021126 102021146 -40250298 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 431 228 49 68 chr9 102021146 102021291 -40250153 - LTR67 LTR ERVL -23 534 391 483 313 74 61 chr9 102021525 102022103 -40249341 + MLT1L LTR MaLR 26 611 -4 249 276 158 24 chr9 102022638 102022765 -40248679 - MIR3 SINE MIR -33 175 32 1238 201 121 84 chr9 102023558 102024045 -40247399 + MLT1D LTR MaLR 1 505 0 1577 202 24 7 chr9 102024309 102024606 -40246838 + AluJo SINE Alu 7 308 -4 339 340 45 15 chr9 102025292 102025492 -40245952 - L2 LINE L2 -549 2765 2560 416 249 202 12 chr9 102026496 102026669 -40244775 + MIR SINE MIR 2 207 -55 283 300 159 70 chr9 102027141 102027398 -40244046 + L2 LINE L2 2985 3264 -8 671 264 11 29 chr9 102027505 102027679 -40243765 + MER58A DNA MER1_type 37 207 -17 273 277 109 20 chr9 102027715 102027816 -40243628 + MIR SINE MIR 123 232 -30 469 181 12 0 chr9 102029048 102029131 -40242313 - MER96 DNA MER1_type? -1 174 91 188 204 0 23 chr9 102029137 102029181 -40242263 + MIR SINE MIR 172 214 -48 380 281 110 48 chr9 102029451 102029679 -40241765 - L2 LINE L2 -527 2787 2546 554 253 11 84 chr9 102030091 102030269 -40241175 + L3 LINE CR1 1406 1570 -7 2012 131 3 3 chr9 102030456 102030753 -40240691 + AluJb SINE Alu 1 297 -15 24 0 0 0 chr9 102031446 102031470 -40239974 + AT_rich Low_complexity Low_complexity 1 24 0 875 223 95 5 chr9 102031487 102031698 -40239746 - MIR SINE MIR -25 237 8 953 309 90 16 chr9 102032210 102032730 -40238714 - L2 LINE L2 -12 3301 2738 610 327 175 10 chr9 102032784 102033093 -40238351 + L2 LINE L2 2910 3269 -3 264 185 15 46 chr9 102033558 102033623 -40237821 - L2 LINE L2 -2 3270 3208 258 333 29 0 chr9 102033619 102033688 -40237756 + MIR SINE MIR 48 118 -144 * 286 324 117 60 chr9 102033880 102034179 -40237265 + L2 LINE L2 2956 3271 -1 204 235 12 62 chr9 102034702 102034783 -40236661 - MIR SINE MIR -2 260 184 391 285 114 6 chr9 102035297 102035455 -40235989 - MIR SINE MIR -72 190 16 279 297 10 30 chr9 102036213 102036314 -40235130 - MIR SINE MIR -57 205 107 1242 221 68 13 chr9 102036574 102036879 -40234565 + MLT1D LTR MaLR 136 457 -48 2877 120 97 2 chr9 102036879 102037311 -40234133 - MER1A DNA MER1_type 0 529 57 279 163 0 0 chr9 102037330 102037373 -40234071 + MLT1D LTR MaLR 453 495 -10 383 235 169 18 chr9 102037542 102037708 -40233736 + L1ME4a LINE L1 5736 5926 -195 369 252 112 14 chr9 102037742 102037885 -40233559 + L1ME4a LINE L1 5965 6121 0 495 303 57 22 chr9 102037919 102038147 -40233297 + L1ME LINE L1 5588 5823 -298 22 0 0 0 chr9 102038493 102038515 -40232929 + AT_rich Low_complexity Low_complexity 1 22 0 257 242 32 42 chr9 102038719 102038814 -40232630 + L2 LINE L2 3219 3312 -1 * 313 357 132 11 chr9 102038812 102039133 -40232311 + L2 LINE L2 2737 3104 -168 22 0 0 0 chr9 102040055 102040077 -40231367 + AT_rich Low_complexity Low_complexity 1 22 0 464 254 77 15 chr9 102040730 102040860 -40230584 - L2 LINE L2 0 3313 3176 2031 196 40 3 chr9 102041439 102041791 -40229653 + MLT1A1 LTR MaLR 1 365 0 24 53 0 0 chr9 102042074 102042112 -40229332 + AT_rich Low_complexity Low_complexity 1 38 0 684 258 81 1 chr9 102042189 102042467 -40228977 + MER46C DNA MER2_type 1 322 -16 1196 260 29 26 chr9 102043040 102043382 -40228062 - MLT1I LTR MaLR 0 409 67 261 233 17 17 chr9 102043419 102043479 -40227965 - L2 LINE L2 -9 3304 3245 292 296 119 53 chr9 102043931 102044157 -40227287 - MIR SINE MIR -12 250 10 34 42 0 0 chr9 102044308 102044356 -40227088 + AT_rich Low_complexity Low_complexity 1 48 0 30 77 0 0 chr9 102044398 102044463 -40226981 + AT_rich Low_complexity Low_complexity 1 65 0 365 85 0 17 chr9 102044625 102044684 -40226760 + (TGAA)n Simple_repeat Simple_repeat 4 61 0 2073 164 20 23 chr9 102044868 102045258 -40226186 + L1MB5 LINE L1 5777 6165 -9 431 261 62 90 chr9 102045457 102045668 -40225776 - MIR SINE MIR -45 217 13 475 286 17 0 chr9 102046044 102046163 -40225281 - MIR3 SINE MIR -48 160 40 379 319 37 25 chr9 102046787 102046950 -40224494 - MIR3 SINE MIR -24 184 20 263 311 68 15 chr9 102047348 102047480 -40223964 + MIR SINE MIR 29 167 -95 4070 120 47 3 chr9 102047562 102048177 -40223267 - L1MA8 LINE L1 -5 6286 5645 205 297 11 109 chr9 102048277 102048452 -40222992 + L2 LINE L2 3112 3269 -3 429 298 216 0 chr9 102049131 102049339 -40222105 - MIR SINE MIR -9 253 1 245 122 61 0 chr9 102049504 102049553 -40221891 - L1MCa LINE L1 -4364 2062 2011 318 271 0 83 chr9 102049705 102049838 -40221606 - MIR SINE MIR -17 245 124 660 328 80 0 chr9 102049852 102050090 -40221354 - MIR SINE MIR 0 262 6 216 288 27 0 chr9 102050097 102050170 -40221274 - MIR SINE MIR -151 111 37 2336 104 0 7 chr9 102051070 102051377 -40220067 + AluSq SINE Alu 1 305 -8 576 248 43 0 chr9 102051498 102051615 -40219829 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 3881 94 132 31 chr9 102051591 102052275 -40219169 + Tigger3(Golem) DNA MER2_type 2277 3029 0 243 200 87 43 chr9 102052286 102052401 -40219043 + L1ME4a LINE L1 5902 6021 -100 368 289 39 0 chr9 102052401 102052505 -40218939 - L2 LINE L2 -18 3295 3188 256 262 16 0 chr9 102052624 102052685 -40218759 - MIR SINE MIR -150 112 51 2420 79 0 19 chr9 102052788 102053104 -40218340 + AluY SINE Alu 1 310 -1 2148 187 5 20 chr9 102053514 102053910 -40217534 + MLT1B LTR MaLR 1 390 0 259 330 11 0 chr9 102054577 102054668 -40216776 - MIR3 SINE MIR -12 196 105 727 339 28 4 chr9 102054771 102055022 -40216422 - L3 LINE CR1 -72 1505 1249 282 301 55 0 chr9 102056397 102056470 -40214974 - L2 LINE L2 -48 3224 3148 207 194 32 65 chr9 102057927 102057987 -40213457 + MER5A DNA MER1_type 108 165 -24 233 317 10 30 chr9 102057987 102058088 -40213356 + MER5B DNA MER1_type 1 99 -79 285 306 113 38 chr9 102058723 102058883 -40212561 + MIR SINE MIR 9 180 -82 564 282 62 50 chr9 102059155 102059396 -40212048 + L3 LINE CR1 1042 1285 -292 217 346 26 0 chr9 102059515 102059593 -40211851 + L3 LINE CR1 1466 1545 -32 339 319 184 0 chr9 102060324 102060465 -40210979 + MIR3 SINE MIR 22 188 -20 552 356 130 42 chr9 102060778 102061296 -40210148 - L2 LINE L2 0 3272 2711 791 291 12 25 chr9 102061892 102062136 -40209308 + MIR SINE MIR 21 261 -1 191 354 15 15 chr9 102062135 102062200 -40209244 + MER5A DNA MER1_type 97 161 -28 * 304 242 172 16 chr9 102062241 102062369 -40209075 - MIR SINE MIR -29 233 86 183 154 77 0 chr9 102062757 102062796 -40208648 + L2 LINE L2 3200 3241 -31 203 152 0 0 chr9 102063998 102064031 -40207413 + GA-rich Low_complexity Low_complexity 1 33 0 2376 76 33 0 chr9 102064182 102064302 -40207142 + AluY SINE Alu 1 116 -195 369 0 0 0 chr9 102064302 102064343 -40207101 + (TAA)n Simple_repeat Simple_repeat 2 42 0 2376 76 33 0 chr9 102064343 102064523 -40206921 + AluY SINE Alu 116 311 0 2337 105 0 16 chr9 102065041 102065356 -40206088 + AluSx SINE Alu 1 310 -2 477 253 45 19 chr9 102065579 102065733 -40205711 + MIR SINE MIR 95 252 -10 245 381 45 22 chr9 102065985 102066119 -40205325 + L2 LINE L2 3117 3253 -19 251 50 50 0 chr9 102066331 102066371 -40205073 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 540 191 0 0 chr9 102066801 102066895 -40204549 + L1MA9 LINE L1 5693 5786 -548 884 107 8 0 chr9 102066895 102067016 -40204428 + Tigger4(Zombi) DNA MER2_type 3 124 -2607 1125 152 104 14 chr9 102067057 102067268 -40204176 + MSTA LTR MaLR 1 230 -198 297 125 0 0 chr9 102067268 102067324 -40204120 + (TC)n Simple_repeat Simple_repeat 2 57 0 1245 146 85 5 chr9 102067324 102067536 -40203908 + MSTA LTR MaLR 200 428 0 1117 117 0 23 chr9 102067537 102067708 -40203736 + Tigger4(Zombi) DNA MER2_type 2565 2731 0 1982 190 9 78 chr9 102067708 102068244 -40203200 + L1MA9 LINE L1 5784 6282 -30 1011 194 24 0 chr9 102068265 102068430 -40203014 + FAM SINE Alu 1 169 -6 482 171 19 0 chr9 102068430 102068528 -40202916 + GA-rich Low_complexity Low_complexity 6 108 0 22 70 0 0 chr9 102068548 102068591 -40202853 + AT_rich Low_complexity Low_complexity 1 43 0 322 278 127 46 chr9 102068726 102068997 -40202447 + L1M4 LINE L1 2792 3095 -3051 2021 144 3 0 chr9 102068997 102069315 -40202129 + AluSq SINE Alu 1 313 0 322 278 127 46 chr9 102069315 102069367 -40202077 + L1M4 LINE L1 3095 3141 -3005 1862 174 3 0 chr9 102070153 102070451 -40200993 - AluSx SINE Alu -13 299 1 3004 156 8 16 chr9 102070543 102071044 -40200400 + L1PB4 LINE L1 5660 6156 0 336 321 59 35 chr9 102071086 102071510 -40199934 + L1M4 LINE L1 3841 4274 -1872 2252 119 6 3 chr9 102071926 102072237 -40199207 - AluSq SINE Alu -1 312 1 2128 198 41 58 chr9 102072314 102072828 -40198616 + MLT1D LTR MaLR 1 505 0 2824 129 25 2 chr9 102072962 102073364 -40198080 + LTR57 LTR ERVL 1 411 0 21 57 0 0 chr9 102073409 102073444 -40198000 + AT_rich Low_complexity Low_complexity 1 35 0 3085 137 19 29 chr9 102073782 102074306 -40197138 + L1MA5 LINE L1 5777 6295 -5 401 266 101 27 chr9 102074385 102074573 -40196871 - L2 LINE L2 0 3313 3112 232 347 112 18 chr9 102074672 102074842 -40196602 + L3 LINE CR1 41 226 -1351 2224 133 18 24 chr9 102075358 102075697 -40195747 - MER1B DNA MER1_type 0 337 1 2070 182 90 49 chr9 102075702 102076148 -40195296 + MLT2B1 LTR ERVL 1 464 -56 180 165 66 0 chr9 102076170 102076261 -40195183 + (TA)n Simple_repeat Simple_repeat 1 97 0 28 48 0 0 chr9 102076353 102076395 -40195049 + AT_rich Low_complexity Low_complexity 1 42 0 1345 156 83 10 chr9 102076401 102076703 -40194741 - MER33 DNA MER1_type 0 324 1 225 0 0 0 chr9 102077378 102077403 -40194041 + (CA)n Simple_repeat Simple_repeat 2 26 0 533 277 101 0 chr9 102077806 102077965 -40193479 - MER5A DNA MER1_type -6 183 9 685 257 56 9 chr9 102078614 102078828 -40192616 - MIR SINE MIR 0 262 39 255 103 0 0 chr9 102079325 102079364 -40192080 + (CA)n Simple_repeat Simple_repeat 1 39 0 231 339 110 0 chr9 102079558 102079667 -40191777 - L2 LINE L2 -1 3271 3151 281 333 97 18 chr9 102079677 102079791 -40191653 - L2 LINE L2 -38 3234 3112 1318 93 20 5 chr9 102079828 102080032 -40191412 + L1MA4A LINE L1 6091 6297 -6 283 298 61 61 chr9 102081149 102081280 -40190164 - L2 LINE L2 0 3272 3142 281 155 17 0 chr9 102083152 102083210 -40188234 + (CA)n Simple_repeat Simple_repeat 1 59 0 358 296 238 17 chr9 102084025 102084265 -40187179 + L3 LINE CR1 315 607 -970 1902 109 0 8 chr9 102084555 102084812 -40186632 + AluSx SINE Alu 1 255 -57 186 103 0 0 chr9 102084851 102084880 -40186564 + (CA)n Simple_repeat Simple_repeat 2 30 0 235 270 22 0 chr9 102084882 102084971 -40186473 + L1MC4 LINE L1 6613 6703 -1339 239 203 14 14 chr9 102085088 102085162 -40186282 + L1MC4 LINE L1 6629 6702 -1340 255 170 0 0 chr9 102085162 102085209 -40186235 + (CATA)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chr9 102085757 102085778 -40185666 + AT_rich Low_complexity Low_complexity 1 21 0 2568 74 0 0 chr9 102086557 102086866 -40184578 + AluSc SINE Alu 1 309 0 390 272 113 42 chr9 102087739 102088004 -40183440 + LTR33 LTR ERVL 2 285 -236 857 183 64 30 chr9 102088333 102088535 -40182909 + MER3 DNA MER1_type 1 209 0 1400 180 25 11 chr9 102088591 102088875 -40182569 + L1PB4 LINE L1 5869 6156 0 1607 194 14 119 chr9 102089072 102089365 -40182079 - MLT1D LTR MaLR 0 505 298 618 51 0 0 chr9 102089365 102089444 -40182000 - L1PA5 LINE L1 -13 6141 6063 1607 194 14 119 chr9 102089444 102089712 -40181732 - MLT1D LTR MaLR -207 298 3 1411 132 45 48 chr9 102090845 102091155 -40180289 + MER33 DNA MER1_type 12 320 -4 197 319 14 14 chr9 102091452 102091521 -40179923 - L2 LINE L2 -1363 1951 1883 333 328 82 8 chr9 102092504 102092638 -40178806 + MIR3 SINE MIR 3 146 -62 424 272 44 33 chr9 102093278 102093474 -40177970 + MIR SINE MIR 5 198 -64 1976 101 76 4 chr9 102094115 102094273 -40177171 - AluY SINE Alu -15 296 151 195 42 0 0 chr9 102094273 102094297 -40177147 + (TA)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 102094296 102094316 -40177128 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 1976 101 76 4 chr9 102094297 102094433 -40177011 - AluY SINE Alu -160 151 1 840 204 21 26 chr9 102094473 102094664 -40176780 - MSTD LTR MaLR 0 396 207 4224 162 63 34 chr9 102094675 102095144 -40176300 + L1MB1 LINE L1 4654 5108 -1060 2434 68 0 10 chr9 102095144 102095452 -40175992 + AluY SINE Alu 1 305 -6 4224 162 63 34 chr9 102095452 102096446 -40174998 + L1MB1 LINE L1 5108 6165 -3 320 290 65 11 chr9 102096533 102096626 -40174818 + L2 LINE L2 3201 3298 -15 380 294 64 0 chr9 102097112 102097316 -40174128 + L1M4 LINE L1 3691 3907 -2239 416 332 163 24 chr9 102097436 102098030 -40173414 + L1M4 LINE L1 3979 4655 -1491 969 118 0 7 chr9 102098527 102098663 -40172781 + AluSq/x SINE Alu 1 135 -177 2366 81 0 7 chr9 102098663 102098960 -40172484 + AluSc SINE Alu 1 295 -14 450 285 79 22 chr9 102099627 102099996 -40171448 + L1M4 LINE L1 3520 3909 -2237 3925 219 58 55 chr9 102100026 102100205 -40171239 + L1M4 LINE L1 12 189 -6353 1740 197 0 0 chr9 102100205 102100514 -40170930 + AluJo SINE Alu 1 309 -3 3925 219 58 55 chr9 102100514 102101567 -40169877 + L1M4 LINE L1 189 1248 -5294 1733 217 57 57 chr9 102101756 102101864 -40169580 + L1M4 LINE L1 1215 1322 -5324 390 167 0 0 chr9 102101864 102101930 -40169514 + L1MC1 LINE L1 6250 6315 -18 1733 217 57 57 chr9 102101930 102102483 -40168961 + L1M4 LINE L1 1322 1872 -4774 12055 199 29 13 chr9 102102495 102106563 -40164881 + L1PA14 LINE L1 1 4136 -2661 5014 147 27 1 chr9 102106566 102107988 -40163456 + L1PA14 LINE L1 5329 6784 -28 29 0 0 0 chr9 102108020 102108049 -40163395 + AT_rich Low_complexity Low_complexity 1 29 0 1521 242 41 52 chr9 102108205 102108663 -40162781 + L1M4 LINE L1 2006 2467 -4177 3417 132 25 5 chr9 102108663 102109253 -40162191 + L1MA4 LINE L1 5693 6294 -6 1521 242 41 52 chr9 102109253 102110193 -40161251 + L1M4 LINE L1 2467 3309 -3335 231 114 0 0 chr9 102110537 102110572 -40160872 + (GGAAA)n Simple_repeat Simple_repeat 5 39 0 419 375 76 23 chr9 102111845 102112360 -40159084 + L2 LINE L2 2717 3258 -14 449 296 112 0 chr9 102112722 102112874 -40158570 - MIR3 SINE MIR -9 199 31 361 339 9 0 chr9 102113606 102113718 -40157726 + MIR SINE MIR 24 136 -126 206 225 11 157 chr9 102114022 102114111 -40157333 - L2 LINE L2 0 3272 3197 331 269 169 15 chr9 102114984 102115114 -40156330 - MIR SINE MIR -10 252 103 2146 150 35 33 chr9 102115649 102116076 -40155368 - Tigger2a DNA MER2_type -6 428 1 331 239 170 58 chr9 102116095 102116283 -40155161 - L1ME4a LINE L1 -82 6039 5831 429 222 0 0 chr9 102116897 102116978 -40154466 - L2 LINE L2 -627 2687 2607 452 216 239 0 chr9 102117031 102117165 -40154279 + L3 LINE CR1 1406 1571 -6 270 81 0 0 chr9 102117356 102117393 -40154051 + (TG)n Simple_repeat Simple_repeat 2 38 0 2350 233 92 62 chr9 102118019 102119058 -40152386 - L2 LINE L2 -4 3309 2303 1474 96 0 84 chr9 102119058 102119202 -40152242 + MER30 DNA MER1_type 1 155 -75 180 0 0 0 chr9 102119202 102119222 -40152222 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 1933 107 22 4 chr9 102119222 102119494 -40151950 - AluSc SINE Alu -32 277 1 1474 96 0 84 chr9 102119494 102119599 -40151845 + MER30 DNA MER1_type 153 230 0 2350 233 92 62 chr9 102119599 102119721 -40151723 - L2 LINE L2 -1010 2303 2103 438 309 83 23 chr9 102120029 102120472 -40150972 - L1ME4a LINE L1 -304 5817 5348 386 356 10 34 chr9 102120532 102120737 -40150707 - L1ME4a LINE L1 -904 5242 5043 2453 71 0 13 chr9 102120790 102121100 -40150344 - AluY SINE Alu -5 306 1 602 96 0 0 chr9 102121145 102121228 -40150216 - AluY SINE Alu -227 83 1 5573 106 2 41 chr9 102121269 102122167 -40149277 - MER4D LTR ERV1 -9 863 1 498 168 53 9 chr9 102122616 102122729 -40148715 + L1 LINE L1 3714 3831 -2315 3457 60 0 7 chr9 102122729 102123180 -40148264 + LTR7 LTR ERV1 1 448 -2 4467 87 16 82 chr9 102123182 102124003 -40147441 + HERVH LTR ERV1 1 767 -6946 324 98 0 0 chr9 102124003 102124054 -40147390 + HERVH LTR ERV1 684 734 -6979 15089 97 8 22 chr9 102124054 102126510 -40144934 + HERVH LTR ERV1 609 2987 -4726 853 141 18 47 chr9 102126482 102126652 -40144792 + HERVH LTR ERV1 3126 3290 -4423 * 3337 114 6 2 chr9 102126642 102127142 -40144302 + HERVH LTR ERV1 3492 3993 -3720 4268 146 6 1 chr9 102127144 102127803 -40143641 + HERVH LTR ERV1 4488 5149 -2564 1390 122 18 9 chr9 102127800 102128021 -40143423 + HERVH LTR ERV1 5597 5819 -1894 * 2511 84 45 13 chr9 102128019 102128399 -40143045 + HERVH LTR ERV1 7322 7713 0 3468 60 0 7 chr9 102128399 102128850 -40142594 + LTR7 LTR ERV1 1 448 -2 3295 186 18 19 chr9 102128854 102129581 -40141863 + L1 LINE L1 3829 4554 -1592 247 115 39 0 chr9 102129562 102129614 -40141830 + L1MB2 LINE L1 6111 6164 -7 * 357 325 96 36 chr9 102129720 102129886 -40141558 + MIR SINE MIR 23 198 -64 1304 184 32 0 chr9 102130103 102130353 -40141091 - Tigger2 DNA MER2_type 0 2718 2461 4360 160 20 0 chr9 102130407 102131149 -40140295 - Tigger2 DNA MER2_type -1961 757 1 224 192 64 0 chr9 102131166 102131244 -40140200 + (TA)n Simple_repeat Simple_repeat 1 83 0 2294 86 109 3 chr9 102132721 102133059 -40138385 + THE1C LTR MaLR 2 375 0 1147 321 139 42 chr9 102133505 102133765 -40137679 - L3 LINE CR1 -8 1569 1336 2159 148 114 5 chr9 102133765 102134151 -40137293 - MSTA LTR MaLR 0 428 1 9465 171 17 2 chr9 102134151 102135777 -40135667 - MSTA-int LTR MaLR 0 1651 1 1959 150 114 30 chr9 102135777 102136170 -40135274 - MSTA LTR MaLR 0 428 3 1147 321 139 42 chr9 102136170 102136775 -40134669 - L3 LINE CR1 -240 1337 617 458 298 41 96 chr9 102137394 102137536 -40133908 - L3 LINE CR1 -1071 506 387 1455 136 0 9 chr9 102137536 102137749 -40133695 - AluJb SINE Alu -15 297 87 458 298 41 96 chr9 102137749 102137898 -40133546 - L3 LINE CR1 -1190 387 231 378 305 57 67 chr9 102138278 102138372 -40133072 - MIR SINE MIR -6 256 163 875 97 15 8 chr9 102138372 102138506 -40132938 + L1PA13 LINE L1 6026 6160 -3 378 305 57 67 chr9 102138506 102138621 -40132823 - MIR SINE MIR -99 163 49 1724 152 0 65 chr9 102138916 102139225 -40132219 + AluSx SINE Alu 1 289 -23 4509 68 9 24 chr9 102139732 102140236 -40131208 + L1PA13 LINE L1 5544 6039 -124 2910 0 0 0 chr9 102140236 102140547 -40130897 + AluYa5 SINE Alu 1 311 0 4509 68 9 24 chr9 102140547 102140671 -40130773 + L1PA13 LINE L1 6039 6163 0 335 301 196 18 chr9 102141203 102141422 -40130022 - MIR SINE MIR -3 259 2 308 261 0 23 chr9 102141559 102141647 -40129797 - MLT1K LTR MaLR -22 566 481 475 254 55 36 chr9 102141941 102142106 -40129338 + MER5B DNA MER1_type 11 178 0 307 323 89 40 chr9 102142266 102142390 -40129054 + L2 LINE L2 3141 3270 -2 643 309 12 6 chr9 102142909 102143074 -40128370 - MIR SINE MIR -85 177 12 22 0 0 0 chr9 102144505 102144527 -40126917 + AT_rich Low_complexity Low_complexity 1 22 0 358 333 9 0 chr9 102144816 102144927 -40126517 - L2 LINE L2 -1360 1954 1843 474 242 39 66 chr9 102145205 102145387 -40126057 + MER69A DNA AcHobo 1 177 0 719 68 0 39 chr9 102145502 102145593 -40125851 + L1PA13 LINE L1 6054 6143 -20 2118 96 0 60 chr9 102145593 102145918 -40125526 - AluSx SINE Alu 0 307 1 312 70 0 0 chr9 102146150 102146193 -40125251 + (CATA)n Simple_repeat Simple_repeat 2 44 0 25 31 0 0 chr9 102146394 102146426 -40125018 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr9 102146741 102146771 -40124673 + AT_rich Low_complexity Low_complexity 1 30 0 392 322 49 8 chr9 102147243 102147574 -40123870 + HsTC2 DNA Tc2 490 890 -1008 2374 245 60 48 chr9 102147696 102148714 -40122730 + L1ME LINE L1 4203 5232 -914 210 150 0 0 chr9 102148716 102148756 -40122688 + (TA)n Simple_repeat Simple_repeat 2 41 0 278 136 76 0 chr9 102148798 102148930 -40122514 + (TA)n Simple_repeat Simple_repeat 2 143 0 14641 128 27 28 chr9 102149114 102149506 -40121938 + Tigger1 DNA MER2_type 1 392 -2026 7646 25 1 0 chr9 102149506 102150798 -40120646 + L1PA4 LINE L1 4860 6152 -3 14641 128 27 28 chr9 102150798 102152826 -40118618 + Tigger1 DNA MER2_type 392 2418 0 784 229 85 25 chr9 102152851 102153087 -40118357 + L1ME LINE L1 5362 5611 -553 22 0 0 0 chr9 102153578 102153600 -40117844 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr9 102153706 102153733 -40117711 + AT_rich Low_complexity Low_complexity 1 27 0 392 330 85 20 chr9 102154127 102154576 -40116868 - HAL1b LINE L1 -731 617 140 2297 125 0 26 chr9 102154901 102155245 -40116199 - MER1B DNA MER1_type 0 337 3 263 140 20 0 chr9 102155376 102155426 -40116018 + (TGG)n Simple_repeat Simple_repeat 3 53 0 619 300 47 12 chr9 102157175 102157345 -40114099 - MIR3 SINE MIR -18 190 15 243 255 226 68 chr9 102157468 102157703 -40113741 - L3 LINE CR1 -42 1535 1264 187 287 213 9 chr9 102157705 102157813 -40113631 - L2 LINE L2 -2 3270 3141 219 214 143 0 chr9 102157828 102157898 -40113546 + MIR SINE MIR 183 262 0 262 365 63 36 chr9 102157925 102157991 -40113453 - L3 LINE CR1 -351 1226 1163 1251 202 5 0 chr9 102157991 102158214 -40113230 - MER58A DNA MER1_type 0 224 1 262 365 63 36 chr9 102158214 102158399 -40113045 - L3 LINE CR1 -414 1163 968 232 289 24 12 chr9 102158446 102158529 -40112915 - L3 LINE CR1 -583 994 911 1163 251 73 83 chr9 102158707 102159403 -40112041 + HAL1 LINE L1 676 1364 -1143 217 293 198 0 chr9 102159456 102159562 -40111882 - L2 LINE L2 -2 3311 3185 206 333 21 0 chr9 102160052 102160145 -40111299 - MIR SINE MIR -148 114 20 243 324 18 36 chr9 102160580 102160691 -40110753 + L3 LINE CR1 1173 1281 -296 995 139 0 7 chr9 102161451 102161602 -40109842 + FRAM SINE Alu 1 146 -30 1014 176 33 11 chr9 102163527 102163709 -40107735 - MER5A DNA MER1_type 0 189 4 815 238 16 16 chr9 102163721 102163910 -40107534 - MER58A DNA MER1_type -1 223 35 397 320 104 14 chr9 102163975 102164272 -40107172 + L2 LINE L2 1758 2081 -1233 1407 266 87 37 chr9 102164284 102164979 -40106465 + MER45C DNA AcHobo 1 763 -190 1043 180 42 54 chr9 102165108 102165145 -40106299 + MER45B DNA AcHobo 763 799 -782 1570 138 30 20 chr9 102165145 102165443 -40106001 + L1MB8 LINE L1 5877 6177 -1 1043 180 42 54 chr9 102165443 102165666 -40105778 + MER45B DNA AcHobo 799 1020 -20 436 335 176 16 chr9 102165666 102166030 -40105414 + L2 LINE L2 2103 2524 -790 21 0 0 0 chr9 102166071 102166092 -40105352 + AT_rich Low_complexity Low_complexity 1 21 0 5092 114 9 50 chr9 102166092 102166968 -40104476 - L1PA16 LINE L1 -9 6157 5318 396 377 84 8 chr9 102167048 102167287 -40104157 + L2 LINE L2 2550 2806 -508 226 244 58 12 chr9 102167312 102167398 -40104046 + L1MC/D LINE L1 5696 5785 -2023 1918 129 36 0 chr9 102167958 102168236 -40103208 - AluSx SINE Alu -21 291 4 2120 105 0 14 chr9 102168261 102168557 -40102887 - AluSx SINE Alu -20 292 1 1066 273 81 32 chr9 102168582 102168704 -40102740 + L1ME4a LINE L1 4817 4931 -1190 1514 155 103 71 chr9 102168704 102169084 -40102360 + MSTD LTR MaLR 1 392 -4 1066 273 81 32 chr9 102169084 102169114 -40102330 + L1ME4a LINE L1 4931 4958 -1163 1538 174 84 3 chr9 102169114 102169401 -40102043 + AluJo SINE Alu 1 310 -2 1066 273 81 32 chr9 102169401 102170283 -40101161 + L1ME4a LINE L1 4958 5894 -227 300 91 0 0 chr9 102171997 102172041 -40099403 + (CA)n Simple_repeat Simple_repeat 1 44 0 326 370 108 44 chr9 102172743 102173038 -40098406 - L2 LINE L2 0 3272 2959 752 243 62 24 chr9 102173282 102173574 -40097870 + L1MCc LINE L1 17 319 -6104 864 222 39 53 chr9 102174065 102174426 -40097018 + L1ME2 LINE L1 4873 5228 -918 379 131 61 13 chr9 102174429 102174747 -40096697 + (TA)n Simple_repeat Simple_repeat 1 333 0 3509 195 70 28 chr9 102174763 102175630 -40095814 + L1ME2 LINE L1 5255 6158 -6 553 342 101 60 chr9 102177065 102178139 -40093305 + L2 LINE L2 2124 3254 -18 266 333 58 0 chr9 102178551 102178638 -40092806 + MER91C DNA MER1_type 49 140 0 288 214 70 96 chr9 102178877 102179064 -40092380 + MIR SINE MIR 3 184 -78 2320 194 27 40 chr9 102179139 102179665 -40091779 + MLT2B1 LTR ERVL 1 519 -1 295 273 41 66 chr9 102179714 102179835 -40091609 + L2 LINE L2 3153 3270 -2 230 246 32 193 chr9 102180350 102180537 -40090907 - L3 LINE CR1 -11 1566 1410 393 229 86 0 chr9 102180558 102180663 -40090781 - MIR3 SINE MIR -36 172 59 703 295 88 35 chr9 102180729 102181105 -40090339 - L3 LINE CR1 -236 1341 946 1027 228 47 24 chr9 102181116 102181371 -40090073 - MIR SINE MIR 0 262 2 27 0 0 0 chr9 102181392 102181419 -40090025 + AT_rich Low_complexity Low_complexity 1 27 0 543 329 133 44 chr9 102181481 102181635 -40089809 - L3 LINE CR1 -753 824 685 216 0 0 0 chr9 102181635 102181659 -40089785 + (CAA)n Simple_repeat Simple_repeat 1 24 0 543 329 133 44 chr9 102181659 102182090 -40089354 - L3 LINE CR1 -892 685 187 242 333 0 0 chr9 102182126 102182189 -40089255 - L3 LINE CR1 -1484 93 31 1599 206 85 14 chr9 102182195 102182559 -40088885 + L2 LINE L2 2269 2658 -656 367 273 94 0 chr9 102182773 102182901 -40088543 + LTR16A1 LTR ERVL 198 337 -120 1144 273 81 11 chr9 102182965 102183549 -40087895 + L2 LINE L2 2670 3305 -8 242 93 23 0 chr9 102184499 102184542 -40086902 + L1MA1 LINE L1 6259 6302 0 413 309 258 7 chr9 102186497 102186788 -40084656 - L2 LINE L2 0 3272 2909 2477 112 3 3 chr9 102186956 102187341 -40084103 + L1MB3 LINE L1 5748 6132 -51 214 48 0 48 chr9 102187571 102187613 -40083831 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 244 320 85 35 chr9 102188135 102188335 -40083109 + L2 LINE L2 2808 3017 -255 181 371 29 14 chr9 102188403 102188473 -40082971 - L2 LINE L2 -86 3186 3116 337 358 173 35 chr9 102188587 102188813 -40082631 + L2 LINE L2 3016 3272 0 222 224 0 0 chr9 102188815 102188864 -40082580 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 258 304 58 58 chr9 102189346 102189484 -40081960 - L2 LINE L2 -2 3311 3174 267 310 183 7 chr9 102189562 102189704 -40081740 - L3 LINE CR1 -3 1574 1408 574 296 169 0 chr9 102189800 102190043 -40081401 - L3 LINE CR1 -205 1372 1089 32 75 0 0 chr9 102190066 102190133 -40081311 + AT_rich Low_complexity Low_complexity 1 67 0 1954 235 137 32 chr9 102190163 102191100 -40080344 + L2 LINE L2 2284 3313 0 21 0 0 0 chr9 102192471 102192492 -40078952 + AT_rich Low_complexity Low_complexity 1 21 0 1205 144 34 10 chr9 102192513 102192721 -40078723 + AluJb SINE Alu 84 296 -16 304 267 9 29 chr9 102193711 102193816 -40077628 + MER5B DNA MER1_type 1 103 -75 1568 131 0 5 chr9 102194769 102194990 -40076454 - AluSx SINE Alu -92 220 1 1936 164 0 10 chr9 102195144 102195443 -40076001 - AluJo SINE Alu -16 296 1 292 261 194 15 chr9 102195559 102195693 -40075751 + MIR3 SINE MIR 30 187 -21 287 48 0 24 chr9 102195700 102195742 -40075702 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 1786 154 29 0 chr9 102195742 102196014 -40075430 - AluSx SINE Alu -32 280 1 405 252 130 9 chr9 102196122 102196237 -40075207 + MIR SINE MIR 22 150 -112 363 241 38 117 chr9 102196729 102196994 -40074450 + L1ME LINE L1 5574 5817 -304 244 279 51 13 chr9 102198206 102198285 -40073159 - L3 LINE CR1 -5 1572 1491 317 313 52 22 chr9 102198385 102198519 -40072925 - MIR SINE MIR -56 206 69 326 244 24 12 chr9 102198569 102198651 -40072793 - L3 LINE CR1 -166 1411 1329 333 235 0 0 chr9 102198677 102198745 -40072699 - L2 LINE L2 -5 3308 3241 567 268 113 70 chr9 102198958 102199242 -40072202 + L2 LINE L2 2969 3264 -8 751 231 120 53 chr9 102199390 102199433 -40072011 + MIR SINE MIR 31 70 -192 1575 128 120 0 chr9 102199433 102199726 -40071718 - AluSg1 SINE Alu 0 323 1 751 231 120 53 chr9 102199726 102199888 -40071556 + MIR SINE MIR 70 252 -10 236 360 119 33 chr9 102199903 102200206 -40071238 + L2 LINE L2 2344 2672 -642 300 233 68 0 chr9 102200238 102200311 -40071133 + MIR SINE MIR 183 260 -2 551 150 18 62 chr9 102200353 102200466 -40070978 + MER5A DNA MER1_type 5 112 -77 421 239 60 30 chr9 102200559 102200693 -40070751 - L3 LINE CR1 -98 1479 1342 1085 130 89 0 chr9 102200696 102200865 -40070579 + Charlie3 DNA MER1_type 1 184 -2526 545 320 56 28 chr9 102201150 102201189 -40070255 + L2 LINE L2 2211 2247 -1067 1902 175 0 3 chr9 102201189 102201497 -40069947 + AluJo SINE Alu 1 307 -5 545 320 56 28 chr9 102201497 102201780 -40069664 + L2 LINE L2 2247 2625 -689 227 252 234 19 chr9 102202865 102202972 -40068472 - MIR SINE MIR -41 221 92 211 363 22 11 chr9 102202984 102203075 -40068369 - MIR SINE MIR -83 125 34 591 207 67 61 chr9 102203311 102203475 -40067969 - MER5B DNA MER1_type -2 176 12 446 289 135 36 chr9 102203548 102203852 -40067592 - L1ME4a LINE L1 -8 6113 5780 208 211 44 67 chr9 102204347 102204437 -40067007 - MIR SINE MIR -31 231 144 2135 118 142 18 chr9 102204572 102204953 -40066491 + MSTA LTR MaLR 1 428 0 244 341 37 0 chr9 102205028 102205110 -40066334 + MER5A DNA MER1_type 68 152 -37 2043 92 0 4 chr9 102205112 102205373 -40066071 + AluSc SINE Alu 24 283 -26 195 270 0 0 chr9 102205385 102205422 -40066022 + MER5A DNA MER1_type 139 175 -14 585 299 116 8 chr9 102205488 102205739 -40065705 - L2 LINE L2 -867 2447 2170 266 220 0 20 chr9 102205858 102205908 -40065536 + L2 LINE L2 3136 3184 -88 246 333 0 0 chr9 102206749 102206812 -40064632 - L2 LINE L2 -4 3268 3206 195 386 15 15 chr9 102207288 102207420 -40064024 - L3 LINE CR1 -584 993 862 388 292 50 41 chr9 102207421 102207640 -40063804 - MLT1J LTR MaLR 0 511 291 642 291 106 43 chr9 102208361 102208415 -40063029 + L1ME3A LINE L1 5429 5478 -692 2277 104 13 0 chr9 102208415 102208713 -40062731 + AluSp SINE Alu 1 302 -11 642 291 106 43 chr9 102208713 102208881 -40062563 + L1ME3A LINE L1 5478 5634 -536 1136 145 22 0 chr9 102208881 102209060 -40062384 - MER5A DNA MER1_type -2 187 5 642 291 106 43 chr9 102209060 102209328 -40062116 + L1ME3A LINE L1 5634 5951 -219 1868 160 0 36 chr9 102209533 102209839 -40061605 + AluJb SINE Alu 5 299 -13 264 59 0 0 chr9 102210055 102210089 -40061355 + (TG)n Simple_repeat Simple_repeat 2 35 0 490 260 108 25 chr9 102210900 102211104 -40060340 + MIR SINE MIR 34 254 -8 3849 188 12 34 chr9 102211104 102211904 -40059540 + LTR39 LTR ERV1 1 783 0 3032 113 57 4 chr9 102212524 102213020 -40058424 + L1MB2 LINE L1 5647 6168 -3 372 113 0 0 chr9 102213438 102213500 -40057944 - L1M3 LINE L1 -367 5816 5755 207 230 27 95 chr9 102213907 102213981 -40057463 + L2 LINE L2 3201 3269 -3 21 0 0 0 chr9 102214886 102214907 -40056537 + AT_rich Low_complexity Low_complexity 1 21 0 555 291 78 17 chr9 102215024 102215203 -40056241 + MIR3 SINE MIR 19 208 0 221 128 21 21 chr9 102215707 102215754 -40055690 + (TA)n Simple_repeat Simple_repeat 2 48 0 493 292 73 52 chr9 102217580 102217813 -40053631 + MIR SINE MIR 25 262 0 290 222 102 12 chr9 102218258 102218363 -40053081 - MIR SINE MIR -97 111 40 323 96 0 0 chr9 102218486 102218538 -40052906 - Alu SINE Alu 0 301 250 1998 110 3 0 chr9 102218639 102218929 -40052515 + MER1A DNA MER1_type 239 529 0 186 259 35 17 chr9 102218940 102218998 -40052446 - L3 LINE CR1 -251 1326 1268 250 192 0 39 chr9 102219449 102219501 -40051943 + L2 LINE L2 3264 3313 0 258 294 151 25 chr9 102219613 102219732 -40051712 - L2 LINE L2 -3 3269 3136 8930 13 0 0 chr9 102219751 102221623 -40049821 + L1HS LINE L1 4284 6155 0 411 326 51 17 chr9 102221773 102221951 -40049493 - MIR SINE MIR -58 204 21 321 353 67 0 chr9 102222946 102223065 -40048379 + L2 LINE L2 3146 3272 0 517 319 28 11 chr9 102224177 102224359 -40047085 - MIR SINE MIR -76 186 2 268 366 22 35 chr9 102224642 102224869 -40046575 + L2 LINE L2 2631 2854 -460 2069 127 3 34 chr9 102226307 102226629 -40044815 + AluSx SINE Alu 1 312 0 1054 180 60 5 chr9 102226840 102227040 -40044404 + AluJb SINE Alu 84 294 -18 2130 117 0 0 chr9 102228002 102228283 -40043161 + AluSx SINE Alu 1 281 -31 181 0 0 0 chr9 102228283 102228303 -40043141 + (CAAAA)n Simple_repeat Simple_repeat 1 175 0 466 298 37 13 chr9 102228511 102228691 -40042753 + MIR SINE MIR 75 258 -4 344 314 8 24 chr9 102228842 102228966 -40042478 - L2 LINE L2 0 3272 3151 304 360 22 15 chr9 102229136 102229272 -40042172 + MER5A DNA MER1_type 8 144 -45 615 263 5 16 chr9 102229769 102229955 -40041489 - MIR3 SINE MIR -7 201 18 911 178 11 28 chr9 102230543 102230723 -40040721 - MER5B DNA MER1_type -1 177 1 678 145 7 72 chr9 102230810 102230885 -40040559 + MER5A DNA MER1_type 1 65 -124 2121 104 3 39 chr9 102230885 102231192 -40040252 + AluSx SINE Alu 1 296 -16 678 145 7 72 chr9 102231192 102231254 -40040190 + MER5A DNA MER1_type 65 129 -60 686 193 0 0 chr9 102231303 102231412 -40040032 - FLAM_C SINE Alu -33 110 2 280 206 32 0 chr9 102231412 102231475 -40039969 + MER5A DNA MER1_type 123 187 -2 666 157 250 0 chr9 102231610 102231750 -40039694 - MER3 DNA MER1_type -30 179 5 418 239 55 0 chr9 102232024 102232133 -40039311 - MIR SINE MIR -91 171 57 1292 107 11 0 chr9 102232208 102232386 -40039058 - AluSg/x SINE Alu -18 294 115 25 31 0 0 chr9 102232679 102232711 -40038733 + AT_rich Low_complexity Low_complexity 1 32 0 193 283 0 0 chr9 102232775 102232821 -40038623 + MIR SINE MIR 101 146 -62 1368 156 9 5 chr9 102232840 102233058 -40038386 - AluJb SINE Alu -21 291 73 381 204 39 48 chr9 102233084 102233187 -40038257 - AluJ/FLAM SINE Alu -200 102 1 209 260 156 0 chr9 102233189 102233266 -40038178 + MIR SINE MIR 162 250 -12 260 289 60 12 chr9 102233314 102233397 -40038047 + MIR3 SINE MIR 119 205 -3 2297 102 0 0 chr9 102233571 102233864 -40037580 - AluSc SINE Alu -12 297 5 492 295 20 0 chr9 102234092 102234241 -40037203 + MIR3 SINE MIR 51 202 -6 469 290 35 0 chr9 102235709 102235854 -40035590 + L2 LINE L2 3160 3309 -4 442 281 15 65 chr9 102235958 102236157 -40035287 - MER5A DNA MER1_type 0 189 1 196 385 30 15 chr9 102236200 102236335 -40035109 - MIR3 SINE MIR -3 205 69 34 72 0 0 chr9 102237245 102237314 -40034130 + AT_rich Low_complexity Low_complexity 1 69 0 427 269 112 0 chr9 102237357 102237491 -40033953 + MIR3 SINE MIR 37 185 -23 2104 136 40 0 chr9 102237642 102238072 -40033372 + L1M1 LINE L1 5171 5618 -682 1149 262 73 24 chr9 102238312 102238736 -40032708 - L3 LINE CR1 -487 1090 646 413 261 37 30 chr9 102239450 102239584 -40031860 + MIR SINE MIR 45 179 -83 638 251 15 26 chr9 102239670 102239865 -40031579 - MIR SINE MIR -39 223 31 252 0 0 0 chr9 102240305 102240333 -40031111 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 228 257 148 20 chr9 102240338 102240439 -40031005 + MIR SINE MIR 138 251 -11 236 289 30 44 chr9 102244850 102244985 -40026459 + MIR SINE MIR 17 149 -59 273 343 8 30 chr9 102245192 102245326 -40026118 + MIR SINE MIR 20 150 -112 229 258 81 16 chr9 102245358 102245420 -40026024 - MIR SINE MIR -178 84 19 21 36 0 0 chr9 102246624 102246652 -40024792 + GC_rich Low_complexity Low_complexity 1 28 0 351 65 0 0 chr9 102246923 102246969 -40024475 + (TGG)n Simple_repeat Simple_repeat 1 46 0 300 158 0 0 chr9 102247976 102248033 -40023411 + (CA)n Simple_repeat Simple_repeat 2 58 0 243 88 0 0 chr9 102252512 102252546 -40018898 + (CCG)n Simple_repeat Simple_repeat 1 34 0 234 269 13 0 chr9 102253257 102253335 -40018109 + (TG)n Simple_repeat Simple_repeat 1 79 0 217 269 0 0 chr9 102253549 102253601 -40017843 + (CG)n Simple_repeat Simple_repeat 1 52 0 22 35 0 0 chr9 102255130 102255159 -40016285 + GC_rich Low_complexity Low_complexity 1 29 0 311 44 22 0 chr9 102255215 102255260 -40016184 + (CGGGG)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr9 102257007 102257036 -40014408 + AT_rich Low_complexity Low_complexity 1 29 0 2087 100 38 3 chr9 102258267 102258556 -40012888 - AluSx SINE Alu -13 299 1 254 299 85 45 chr9 102259618 102259795 -40011649 + MIR3 SINE MIR 18 201 -7 1888 134 0 25 chr9 102261942 102262226 -40009218 - AluSx SINE Alu -8 304 28 689 217 65 88 chr9 102262260 102262601 -40008843 - L1MC4a LINE L1 -1850 5958 5626 1551 253 57 15 chr9 102262605 102263392 -40008052 - L1MC4a LINE L1 -750 5396 4896 393 250 78 0 chr9 102265435 102265551 -40005893 - MER117 DNA MER1_type 0 197 73 1765 142 44 14 chr9 102265685 102265981 -40005463 - AluJb SINE Alu -7 305 1 1131 254 65 37 chr9 102266235 102266695 -40004749 + MLT1L LTR MaLR 142 614 -1 1939 163 10 3 chr9 102268433 102268740 -40002704 - AluJb SINE Alu -1 311 3 1614 148 3 50 chr9 102269703 102270000 -40001444 + AluJo SINE Alu 5 287 -25 220 295 26 0 chr9 102270238 102270316 -40001128 - MIR SINE MIR -86 122 43 1235 222 84 80 chr9 102270338 102270839 -40000605 - MLT1D LTR MaLR 0 505 3 330 252 72 18 chr9 102271381 102271492 -39999952 + L2 LINE L2 3196 3312 -1 401 258 180 34 chr9 102271949 102272127 -39999317 - MIR SINE MIR -44 218 15 491 253 79 67 chr9 102272155 102272483 -39998961 - HAL1 LINE L1 -1030 1477 1146 365 304 76 29 chr9 102272638 102272914 -39998530 + L1MC4a LINE L1 3760 4048 -2098 1025 253 73 45 chr9 102273000 102273356 -39998088 - MLT1J2 LTR MaLR 0 450 85 630 229 112 116 chr9 102273410 102273919 -39997525 + L1MC4a LINE L1 5507 6016 -105 232 218 39 0 chr9 102274158 102274236 -39997208 + L1ME4a LINE L1 6038 6118 -3 192 383 64 21 chr9 102274375 102274516 -39996928 + L2 LINE L2 3107 3253 -19 764 137 0 50 chr9 102274576 102274715 -39996729 - FLAM_C SINE Alu 0 133 2 220 222 0 19 chr9 102275041 102275095 -39996349 + CT-rich Low_complexity Low_complexity 4 56 0 2179 110 3 3 chr9 102275433 102275725 -39995719 - AluSg SINE Alu -16 294 3 2284 195 25 66 chr9 102275727 102276256 -39995188 + MLT2B1 LTR ERVL 1 507 -13 1875 151 7 20 chr9 102276356 102276661 -39994783 + AluJo SINE Alu 2 302 -10 348 302 154 37 chr9 102276695 102277117 -39994327 - L2 LINE L2 -1 3271 2801 1331 45 0 0 chr9 102277132 102277289 -39994155 - L1PA3 LINE L1 0 6155 5999 203 266 125 31 chr9 102277391 102277455 -39993989 + L2 LINE L2 3155 3224 -48 516 264 58 43 chr9 102277646 102277854 -39993590 + MIR SINE MIR 41 251 -11 2876 13 0 6 chr9 102277856 102278171 -39993273 - AluYb8 SINE Alu -5 313 1 245 271 57 14 chr9 102278214 102278284 -39993160 - MIR SINE MIR -189 73 1 282 29 0 0 chr9 102278843 102278878 -39992566 + (CA)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr9 102278920 102278943 -39992501 + (T)n Simple_repeat Simple_repeat 1 23 0 294 267 56 22 chr9 102279062 102279152 -39992292 + L2 LINE L2 3179 3271 -1 516 215 0 0 chr9 102279681 102279788 -39991656 - FLAM_A SINE Alu -4 138 32 258 81 0 0 chr9 102280356 102280393 -39991051 + (TG)n Simple_repeat Simple_repeat 2 38 0 852 240 145 34 chr9 102280492 102280736 -39990708 + L1ME3 LINE L1 3069 3285 -2861 1865 109 69 7 chr9 102280736 102281012 -39990432 + AluSx SINE Alu 1 293 -19 852 240 145 34 chr9 102281012 102281208 -39990236 + L1ME3 LINE L1 3285 3558 -2588 1120 223 36 0 chr9 102281250 102281528 -39989916 + L1ME3 LINE L1 3630 3917 -2229 948 209 5 43 chr9 102281579 102281613 -39989831 + AluJo SINE Alu 1 35 -277 2018 130 55 19 chr9 102281613 102281975 -39989469 - THE1C LTR MaLR 0 375 1 948 209 5 43 chr9 102281975 102282150 -39989294 + AluJo SINE Alu 35 202 -110 1195 224 43 85 chr9 102282200 102282669 -39988775 + L1ME3 LINE L1 3978 4426 -1720 * 2749 217 120 10 chr9 102282649 102283701 -39987743 + L1ME3 LINE L1 4981 6160 -2 702 279 73 80 chr9 102283746 102284417 -39987027 + L1M4 LINE L1 2266 2933 -3213 1958 114 65 0 chr9 102284417 102284742 -39986702 + L1MA4 LINE L1 5949 6294 -6 702 279 73 80 chr9 102284742 102284850 -39986594 + L1M4 LINE L1 2933 3040 -3106 2448 94 82 23 chr9 102284855 102285247 -39986197 + L1PA11 LINE L1 5760 6174 0 598 161 173 0 chr9 102285517 102285679 -39985765 - L1M4 LINE L1 -2887 3259 3070 240 35 0 0 chr9 102285781 102285810 -39985634 + (CA)n Simple_repeat Simple_repeat 2 30 0 532 321 90 61 chr9 102285818 102286429 -39985015 + L1M4 LINE L1 3435 4063 -2083 232 330 0 0 chr9 102286625 102286713 -39984731 + L1MC4 LINE L1 6615 6702 -1340 509 305 39 37 chr9 102286743 102287231 -39984213 + L1M4 LINE L1 4357 4845 -1301 5244 126 45 16 chr9 102287346 102288244 -39983200 + L1MA7 LINE L1 5368 6291 0 2105 231 80 27 chr9 102289248 102289850 -39981594 - L1ME3 LINE L1 -8 6154 5521 284 373 0 16 chr9 102290720 102290846 -39980598 + L2 LINE L2 2517 2640 -674 2906 158 63 80 chr9 102291006 102291709 -39979735 - LTR8 LTR ERV1 0 691 1 481 301 41 79 chr9 102291713 102291901 -39979543 + MIR3 SINE MIR 19 198 -10 447 240 32 0 chr9 102292386 102292511 -39978933 + L1MD3 LINE L1 7833 7961 -34 4353 54 0 4 chr9 102292527 102293067 -39978377 + L1PA7 LINE L1 5613 6150 -4 23 0 0 0 chr9 102293145 102293168 -39978276 + AT_rich Low_complexity Low_complexity 1 23 0 1975 222 55 11 chr9 102293638 102294107 -39977337 + MLT1D LTR MaLR 6 495 -10 715 218 36 96 chr9 102294297 102294460 -39976984 - L1ME1 LINE L1 -93 6073 5935 3550 102 5 30 chr9 102294460 102295026 -39976418 + L1PB1 LINE L1 5597 6148 -3 715 218 36 96 chr9 102295026 102295165 -39976279 - L1ME1 LINE L1 -231 5935 5789 275 196 0 0 chr9 102295223 102295274 -39976170 - L2 LINE L2 0 3313 3263 264 87 22 22 chr9 102295285 102295331 -39976113 - L1MC1 LINE L1 -15 6318 6273 325 338 78 7 chr9 102295507 102295649 -39975795 + MIR3 SINE MIR 6 157 -51 623 196 26 13 chr9 102297233 102297386 -39974058 - L1MA10 LINE L1 -11 6323 6169 576 241 23 56 chr9 102297397 102297613 -39973831 - L1ME1 LINE L1 -169 5997 5789 250 220 0 0 chr9 102297667 102297717 -39973727 - L2 LINE L2 0 3313 3264 215 195 24 0 chr9 102297683 102297724 -39973720 - MIR SINE MIR -10 252 211 * 2198 117 3 19 chr9 102297729 102298046 -39973398 - AluSx SINE Alu 0 312 1 2123 143 20 3 chr9 102298047 102298398 -39973046 - L1MC1 LINE L1 -9 6324 5968 337 307 178 25 chr9 102299944 102300146 -39971298 + MIR SINE MIR 30 262 0 317 299 45 32 chr9 102300701 102300858 -39970586 - L1ME1 LINE L1 -697 5424 5266 1918 101 43 29 chr9 102303386 102303702 -39967742 + AluSx SINE Alu 4 323 0 238 197 42 0 chr9 102303767 102303838 -39967606 + (TA)n Simple_repeat Simple_repeat 1 74 0 207 0 0 0 chr9 102303897 102303920 -39967524 + (TG)n Simple_repeat Simple_repeat 2 24 0 198 71 0 0 chr9 102303919 102303947 -39967497 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 21 0 0 0 chr9 102304318 102304339 -39967105 + AT_rich Low_complexity Low_complexity 1 21 0 231 125 0 0 chr9 102304473 102304513 -39966931 + (CAT)n Simple_repeat Simple_repeat 3 42 0 1786 174 63 28 chr9 102304984 102305381 -39966063 + MLT1C LTR MaLR 1 411 -56 1705 174 25 0 chr9 102305528 102305827 -39965617 - AluSx SINE Alu 0 306 1 800 159 37 25 chr9 102306000 102306163 -39965281 - MLT1C LTR MaLR -301 166 2 452 303 162 0 chr9 102306699 102306884 -39964560 + MIR SINE MIR 10 224 -38 412 249 40 64 chr9 102307079 102307252 -39964192 + MLT1I LTR MaLR 71 239 -170 2040 94 0 4 chr9 102307279 102307545 -39963899 - AluSx SINE Alu -46 266 2 830 232 17 0 chr9 102307549 102307726 -39963718 + MER58A DNA MER1_type 45 224 0 347 265 110 22 chr9 102307831 102307967 -39963477 - MLT1I LTR MaLR -30 379 232 2135 185 45 21 chr9 102308043 102308082 -39963362 - MLT2B1 LTR ERVL 0 554 517 215 61 30 0 chr9 102308082 102308115 -39963329 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2135 185 45 21 chr9 102308115 102308550 -39962894 - MLT2B1 LTR ERVL -37 517 3 1011 155 114 23 chr9 102308552 102308771 -39962673 - MER96B DNA MER1_type? -37 380 142 392 284 166 26 chr9 102310900 102311213 -39960231 - HAL1 LINE L1 0 2507 2151 643 288 82 24 chr9 102311248 102311665 -39959779 + L1ME4a LINE L1 5637 6077 -44 789 181 0 0 chr9 102312753 102312880 -39958564 + FLAM_A SINE Alu 2 128 -5 2099 126 3 7 chr9 102312882 102313176 -39958268 + AluSx SINE Alu 3 295 -17 188 239 22 0 chr9 102314887 102314933 -39956511 - MIR SINE MIR -121 141 95 5726 90 36 2 chr9 102315710 102316513 -39954931 + L1PA15 LINE L1 5335 6164 -1 232 255 0 0 chr9 102316877 102316928 -39954516 + (TATG)n Simple_repeat Simple_repeat 4 54 0 317 24 24 0 chr9 102317494 102317536 -39953908 + (TTTTC)n Simple_repeat Simple_repeat 4 46 0 2109 100 4 4 chr9 102317536 102317816 -39953628 - AluSp SINE Alu -33 280 1 559 279 196 23 chr9 102318060 102318279 -39953165 + MIR SINE MIR 5 261 -1 22 35 0 0 chr9 102319256 102319285 -39952159 + AT_rich Low_complexity Low_complexity 1 29 0 649 336 74 59 chr9 102319333 102320131 -39951313 + L2 LINE L2 2130 2939 -375 292 256 0 13 chr9 102321400 102321478 -39949966 + MLT1K LTR MaLR 507 583 -5 22 0 0 0 chr9 102321521 102321543 -39949901 + AT_rich Low_complexity Low_complexity 1 22 0 228 246 0 0 chr9 102321856 102321917 -39949527 + (TA)n Simple_repeat Simple_repeat 1 61 0 23 0 0 0 chr9 102322061 102322084 -39949360 + AT_rich Low_complexity Low_complexity 1 23 0 3507 197 21 42 chr9 102322190 102323072 -39948372 + L1ME2 LINE L1 5291 6154 -10 211 189 0 0 chr9 102323181 102323218 -39948226 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 347 214 32 32 chr9 102323218 102323344 -39948100 + L1MC4 LINE L1 7916 8041 -1 994 204 81 0 chr9 102323881 102324102 -39947342 + MIR SINE MIR 13 251 -11 1486 149 71 68 chr9 102324114 102324422 -39947022 - AluJo SINE Alu -3 309 1 2328 65 3 3 chr9 102324841 102325133 -39946311 - AluY SINE Alu -19 292 1 461 321 53 72 chr9 102325227 102325660 -39945784 + LTR67 LTR ERVL 123 547 -10 264 255 51 82 chr9 102325885 102325983 -39945461 - L2 LINE L2 -4 3268 3174 676 253 17 11 chr9 102326185 102326359 -39945085 + MIR SINE MIR 74 248 -14 383 333 0 36 chr9 102327460 102327551 -39943893 + MIR SINE MIR 16 102 -106 4094 77 0 31 chr9 102327551 102328123 -39943321 - MER41A LTR ERV1 0 554 1 383 333 0 36 chr9 102328123 102328169 -39943275 + MIR SINE MIR 102 148 -60 536 290 0 0 chr9 102328174 102328298 -39943146 - L2 LINE L2 0 3313 3190 209 133 0 67 chr9 102329146 102329191 -39942253 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 191 296 40 40 chr9 102329801 102329926 -39941518 + MIR SINE MIR 110 234 -28 730 263 29 26 chr9 102330014 102330124 -39941320 + MIR SINE MIR 32 140 -122 1974 143 10 13 chr9 102330124 102330431 -39941013 + AluJb SINE Alu 1 306 -6 730 263 29 26 chr9 102330431 102330538 -39940906 + MIR SINE MIR 140 252 -10 432 255 174 7 chr9 102330847 102330996 -39940448 - MER5A DNA MER1_type -2 187 14 252 351 117 31 chr9 102331164 102331386 -39940058 + MIR SINE MIR 1 241 -21 23 33 0 0 chr9 102332198 102332228 -39939216 + AT_rich Low_complexity Low_complexity 1 30 0 434 360 70 49 chr9 102333019 102333447 -39937997 + L2 LINE L2 2381 2817 -497 872 170 7 0 chr9 102333514 102333667 -39937777 - MER20 DNA MER1_type -2 217 64 2426 107 8 8 chr9 102333870 102334224 -39937220 - THE1A LTR MaLR -1 354 1 11407 98 8 6 chr9 102334224 102335800 -39935644 - THE1A-int LTR MaLR 0 1580 1 2255 89 8 76 chr9 102335800 102336181 -39935263 - THE1A LTR MaLR 0 355 1 1478 188 73 4 chr9 102336368 102336640 -39934804 + AluJb SINE Alu 1 291 -21 274 121 17 17 chr9 102336643 102336701 -39934743 + GA-rich Low_complexity Low_complexity 2 59 0 265 211 79 13 chr9 102337604 102337680 -39933764 + MIR SINE MIR 149 229 -33 5043 194 59 64 chr9 102337781 102339403 -39932041 - L1MC4a LINE L1 0 7808 6196 380 281 66 75 chr9 102339735 102339785 -39931659 + L1ME4a LINE L1 5318 5367 -754 1460 117 30 15 chr9 102339785 102340049 -39931395 + L1MA2 LINE L1 6036 6303 -1 380 281 66 75 chr9 102340049 102340070 -39931374 + L1ME4a LINE L1 5367 5387 -734 2479 93 0 0 chr9 102340070 102340382 -39931062 + AluSx SINE Alu 1 312 0 380 281 66 75 chr9 102340382 102340644 -39930800 + L1ME4a LINE L1 5387 5649 -472 4181 112 87 122 chr9 102340662 102340993 -39930451 - L1MA4 LINE L1 -3 6297 5956 644 195 0 8 chr9 102340993 102341111 -39930333 - FLAM_A SINE Alu -6 136 20 4181 112 87 122 chr9 102341111 102341151 -39930293 - L1MA4 LINE L1 -344 5956 5916 2119 110 10 3 chr9 102341151 102341452 -39929992 - AluY SINE Alu -8 303 1 4181 112 87 122 chr9 102341452 102341704 -39929740 - L1MA4 LINE L1 -384 5916 5657 1419 240 24 0 chr9 102341704 102341996 -39929448 - AluJo SINE Alu -13 299 1 4181 112 87 122 chr9 102341996 102342065 -39929379 - L1MA4 LINE L1 -643 5657 5587 2273 104 3 0 chr9 102342065 102342364 -39929080 + AluSq SINE Alu 2 301 -12 4181 112 87 122 chr9 102342364 102342706 -39928738 - L1MA4 LINE L1 -713 5587 5180 268 256 50 50 chr9 102342706 102342827 -39928617 + L1ME4a LINE L1 5652 5772 -349 266 241 57 14 chr9 102342994 102343135 -39928309 - L1MEc LINE L1 -4646 1917 1771 549 306 158 48 chr9 102343140 102343800 -39927644 - L1MEc LINE L1 -1076 1667 865 987 134 0 0 chr9 102344082 102344224 -39927220 - FLAM_C SINE Alu -1 142 1 228 194 0 0 chr9 102344644 102344680 -39926764 + MIR SINE MIR 40 75 -133 322 250 16 82 chr9 102344924 102345108 -39926336 + L1ME4a LINE L1 5906 6077 -44 666 124 0 0 chr9 102345603 102345713 -39925731 - AluJo SINE Alu 0 303 194 759 192 13 26 chr9 102345715 102345871 -39925573 - AluJo SINE Alu -158 154 1 507 107 0 0 chr9 102346404 102346479 -39924965 + (TTTA)n Simple_repeat Simple_repeat 3 77 0 616 226 75 60 chr9 102347826 102348078 -39923366 - MLT1J LTR MaLR 0 511 256 1639 201 0 21 chr9 102348161 102348449 -39922995 - AluJo SINE Alu -30 282 1 273 261 78 63 chr9 102348456 102348854 -39922590 - HAL1 LINE L1 -1467 1040 637 406 276 66 66 chr9 102348961 102349294 -39922150 - HAL1 LINE L1 -1900 607 275 643 195 0 39 chr9 102349295 102349423 -39922021 - AluJb SINE Alu -189 123 1 545 254 38 68 chr9 102349462 102349698 -39921746 - HAL1 LINE L1 -2276 231 3 872 288 65 45 chr9 102350105 102350615 -39920829 + MLT1L LTR MaLR 93 612 -3 203 300 50 0 chr9 102350924 102350984 -39920460 - L3 LINE CR1 -39 1538 1476 302 375 59 0 chr9 102351019 102351171 -39920273 - MIR SINE MIR -31 231 71 846 231 157 45 chr9 102351245 102351582 -39919862 - L3 LINE CR1 -583 994 620 464 339 57 57 chr9 102351611 102351891 -39919553 - L3 LINE CR1 -1287 290 11 328 186 178 59 chr9 102352350 102352468 -39918976 + L2 LINE L2 3173 3304 -9 227 267 16 15 chr9 102353059 102353134 -39918310 + CT-rich Low_complexity Low_complexity 2 60 0 661 163 32 0 chr9 102353134 102353257 -39918187 - L1PA16 LINE L1 0 6166 6040 568 163 17 87 chr9 102353468 102353640 -39917804 - MER21B LTR ERV1 0 863 704 2013 111 3 35 chr9 102354456 102354774 -39916670 - AluSx SINE Alu 0 311 3 234 0 0 0 chr9 102356034 102356060 -39915384 + (GA)n Simple_repeat Simple_repeat 1 26 0 869 110 0 16 chr9 102356462 102356589 -39914855 + AluSq/x SINE Alu 1 125 -187 267 31 0 0 chr9 102356591 102356623 -39914821 + (TA)n Simple_repeat Simple_repeat 2 33 0 286 233 0 0 chr9 102356642 102356702 -39914742 - MLT1G1 LTR MaLR -532 63 4 2510 234 54 63 chr9 102356896 102357598 -39913846 - L1MEc LINE L1 -4837 1378 714 2289 95 7 3 chr9 102357598 102357894 -39913550 - AluY SINE Alu -14 297 1 2510 234 54 63 chr9 102357894 102358312 -39913132 - L1MEc LINE L1 -5501 714 294 2188 107 3 13 chr9 102358564 102358873 -39912571 - AluSx SINE Alu -6 306 1 372 302 57 15 chr9 102360030 102360361 -39911083 - L1MC/D LINE L1 -442 5679 5328 22 35 0 0 chr9 102360470 102360499 -39910945 + AT_rich Low_complexity Low_complexity 1 29 0 577 269 167 26 chr9 102360503 102360964 -39910480 - HAL1 LINE L1 -4 2503 1978 2287 123 0 0 chr9 102360997 102361307 -39910137 - AluSg SINE Alu 0 310 1 2242 81 3 0 chr9 102361351 102361662 -39909782 - AluY SINE Alu 0 312 1 6146 38 0 0 chr9 102361766 102362805 -39908639 - L1PA5 LINE L1 -140 6014 4976 1315 202 116 94 chr9 102362923 102363489 -39907955 - MLT1G1 LTR MaLR -9 617 4 284 348 108 36 chr9 102364125 102364375 -39907069 + L3 LINE CR1 125 392 -1185 23 78 0 0 chr9 102365497 102365548 -39905896 + AT_rich Low_complexity Low_complexity 1 51 0 236 154 0 0 chr9 102365917 102365956 -39905488 + L2 LINE L2 2719 2757 -557 211 351 64 0 chr9 102366022 102366116 -39905328 + L2 LINE L2 3157 3256 -16 248 207 98 49 chr9 102367193 102367275 -39904169 - MER91C DNA MER1_type -19 121 36 404 320 39 73 chr9 102367746 102367864 -39903580 + MER5B DNA MER1_type 3 115 -63 2011 100 4 4 chr9 102367864 102368135 -39903309 - AluSg SINE Alu -11 299 29 404 320 39 73 chr9 102368135 102368194 -39903250 + MER5B DNA MER1_type 115 174 -4 650 333 102 18 chr9 102368338 102368680 -39902764 - L2 LINE L2 -6 3266 2896 21 36 0 0 chr9 102368724 102368752 -39902692 + AT_rich Low_complexity Low_complexity 1 28 0 898 115 25 0 chr9 102368752 102368874 -39902570 - FLAM_C SINE Alu -17 126 2 529 135 0 0 chr9 102368915 102368989 -39902455 + FAM SINE Alu 90 163 -22 290 341 118 7 chr9 102369543 102369678 -39901766 + L2 LINE L2 3123 3272 0 1013 234 33 21 chr9 102370366 102370591 -39900853 - L1MEc LINE L1 -3624 2802 2570 1951 137 17 92 chr9 102370591 102371013 -39900431 + MLT1B LTR MaLR 1 390 0 1013 234 33 21 chr9 102371013 102371120 -39900324 - L1MEc LINE L1 -3856 2570 2466 1119 190 201 2 chr9 102371132 102371504 -39899940 - L1MEc LINE L1 -3971 2455 2054 17772 143 27 8 chr9 102372662 102375689 -39895755 + L1M1 LINE L1 8 3092 -4473 1003 159 5 62 chr9 102375690 102375898 -39895546 - AluJo SINE Alu -21 291 96 5103 186 16 30 chr9 102376003 102377136 -39894308 - L1 LINE L1 -2667 4898 3803 2126 127 0 3 chr9 102377136 102377428 -39894016 + AluSx SINE Alu 15 305 -7 5103 186 16 30 chr9 102377428 102378139 -39893305 - L1 LINE L1 -3762 3803 3083 319 200 0 0 chr9 102378139 102378194 -39893250 + Alu SINE Alu 1 55 -244 2198 144 23 0 chr9 102378209 102378606 -39892838 + L1M1 LINE L1 2020 2425 -5140 744 257 152 46 chr9 102378722 102379111 -39892333 - HAL1 LINE L1 -586 1921 1575 216 0 0 0 chr9 102379111 102379135 -39892309 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2220 93 0 17 chr9 102379138 102379428 -39892016 - AluSc SINE Alu -24 285 1 744 257 152 46 chr9 102379428 102379648 -39891796 - HAL1 LINE L1 -933 1574 1243 725 217 7 0 chr9 102379712 102379850 -39891594 + MER58B DNA MER1_type 203 341 0 301 200 74 68 chr9 102379880 102380070 -39891374 - HAL1 LINE L1 -1346 1161 971 374 309 93 39 chr9 102380080 102380284 -39891160 - HAL1 LINE L1 -1732 775 561 189 395 60 0 chr9 102380363 102380497 -39890947 - L2 LINE L2 -610 2704 2563 754 289 112 37 chr9 102381057 102381760 -39889684 - L1M4 LINE L1 -946 5200 4445 681 206 15 0 chr9 102381760 102381891 -39889553 + MLT1G1 LTR MaLR 1 133 -462 213 218 337 20 chr9 102382275 102382376 -39889068 - MIR SINE MIR -111 151 19 2532 72 0 0 chr9 102383199 102383505 -39887939 + AluY SINE Alu 1 306 -5 942 226 169 54 chr9 102383692 102384140 -39887304 - L2 LINE L2 -24 3289 2785 1385 184 120 9 chr9 102384158 102384596 -39886848 - L1MD2 LINE L1 -436 5730 5394 4472 255 83 19 chr9 102384709 102386327 -39885117 - L1MEc LINE L1 -4257 2139 418 1813 156 3 11 chr9 102386653 102386936 -39884508 + AluJb SINE Alu 1 281 -31 269 183 0 28 chr9 102386936 102387007 -39884437 + GA-rich Low_complexity Low_complexity 1 69 0 283 219 16 16 chr9 102387043 102387107 -39884337 - MER5A DNA MER1_type -37 152 89 707 192 6 66 chr9 102387579 102387761 -39883683 - MER104 DNA Tc2 -9 171 1 2095 103 0 3 chr9 102388285 102388567 -39882877 - AluSq SINE Alu -17 296 16 2228 101 0 29 chr9 102388615 102388931 -39882513 - AluSx SINE Alu -5 307 1 318 375 33 0 chr9 102389341 102389461 -39881983 - L2 LINE L2 0 3272 3149 1739 220 110 81 chr9 102389612 102390593 -39880851 - L1ME3 LINE L1 -1 6144 5136 681 128 0 0 chr9 102390637 102390739 -39880705 - FRAM SINE Alu -12 164 63 1293 237 72 21 chr9 102390741 102391214 -39880230 - L1ME3 LINE L1 -1040 5089 4593 1144 103 0 0 chr9 102391270 102391457 -39879987 - AluSg/x SINE Alu 0 314 128 2356 89 0 3 chr9 102391457 102391759 -39879685 - AluSx SINE Alu -11 301 1 248 226 0 0 chr9 102391769 102391822 -39879622 - L1ME3 LINE L1 -1576 4553 4501 2141 252 89 62 chr9 102391829 102392667 -39878777 - L1ME3 LINE L1 -2358 3771 2957 2330 97 0 3 chr9 102392667 102392966 -39878478 - AluSq SINE Alu -15 298 1 2141 252 89 62 chr9 102392966 102393844 -39877600 - L1ME3 LINE L1 -3172 2957 2046 1366 177 65 52 chr9 102393893 102393950 -39877494 - MER2 DNA MER2_type -31 314 259 2398 87 0 3 chr9 102393950 102394262 -39877182 + AluSx SINE Alu 1 311 -1 1366 177 65 52 chr9 102394262 102394514 -39876930 - MER2 DNA MER2_type -86 259 1 743 287 109 43 chr9 102394686 102395795 -39875649 - L1ME3 LINE L1 -4576 1734 533 1238 168 67 44 chr9 102396290 102396605 -39874839 + MER33 DNA MER1_type 2 323 -1 576 322 85 0 chr9 102396610 102396809 -39874635 + MIR SINE MIR 5 220 -42 317 237 298 0 chr9 102397196 102397327 -39874117 + MIR3 SINE MIR 33 202 -6 251 281 105 46 chr9 102397609 102397762 -39873682 + MIR SINE MIR 5 166 -96 234 150 0 0 chr9 102398077 102398117 -39873327 + (CA)n Simple_repeat Simple_repeat 2 41 0 339 277 30 60 chr9 102398118 102398353 -39873091 + L1ME LINE L1 3720 3947 -2199 299 312 15 0 chr9 102398603 102398734 -39872710 + L1ME LINE L1 5678 5814 -307 7107 28 4 0 chr9 102400354 102401216 -39870228 + L1PA3 LINE L1 5316 6180 0 22 0 0 0 chr9 102401290 102401312 -39870132 + AT_rich Low_complexity Low_complexity 1 22 0 262 255 20 0 chr9 102401408 102401459 -39869985 + L2 LINE L2 3239 3290 -23 22 56 0 0 chr9 102404418 102404454 -39866990 + AT_rich Low_complexity Low_complexity 1 36 0 264 325 111 25 chr9 102405109 102405373 -39866071 + L2 LINE L2 2706 2996 -276 281 336 128 8 chr9 102405512 102405637 -39865807 + L2 LINE L2 3116 3255 -17 215 340 28 28 chr9 102405678 102405784 -39865660 + L2 LINE L2 2541 2646 -668 1641 104 12 4 chr9 102405801 102406042 -39865402 - AluSx SINE Alu -8 304 62 231 270 49 119 chr9 102406306 102406491 -39864953 + L2 LINE L2 2918 3089 -183 411 269 82 8 chr9 102406675 102406809 -39864635 - MIR SINE MIR -117 145 2 355 302 21 10 chr9 102406817 102406913 -39864531 + L2 LINE L2 3176 3272 0 757 178 0 22 chr9 102407412 102407547 -39863897 + FLAM_C SINE Alu 2 133 0 1983 148 0 7 chr9 102407607 102407911 -39863533 - AluJb SINE Alu -10 302 1 262 259 17 0 chr9 102408462 102408520 -39862924 - L2 LINE L2 -4 3268 3210 2331 104 0 0 chr9 102408585 102408892 -39862552 - AluSg SINE Alu -3 307 1 411 367 98 17 chr9 102409161 102409518 -39861926 - L2 LINE L2 -374 2940 2555 632 310 123 59 chr9 102409894 102410365 -39861079 - L3 LINE CR1 -6 1571 1071 442 170 44 3 chr9 102410582 102410686 -39860758 + L1ME1 LINE L1 6070 6333 -1 188 240 0 20 chr9 102411110 102411160 -39860284 - MIR SINE MIR -5 257 209 654 124 9 0 chr9 102411199 102411312 -39860132 + L1MB4 LINE L1 6066 6179 -1 189 291 12 93 chr9 102411579 102411665 -39859779 + MIR SINE MIR 30 108 -154 34 55 0 0 chr9 102413378 102413433 -39858011 + AT_rich Low_complexity Low_complexity 1 55 0 494 296 106 22 chr9 102414004 102414183 -39857261 - MIR SINE MIR -53 209 16 789 166 166 12 chr9 102414197 102414360 -39857084 + MER5A DNA MER1_type 2 189 0 228 271 94 0 chr9 102414840 102414925 -39856519 + L1ME2 LINE L1 6063 6155 -9 672 260 24 6 chr9 102414936 102415105 -39856339 + L3 LINE CR1 1402 1573 -4 187 313 38 12 chr9 102418677 102418757 -39852687 - MER5A DNA MER1_type 0 189 108 434 196 349 5 chr9 102419481 102419670 -39851774 + MER112 DNA MER1_type 1 254 -2 278 312 30 4 chr9 102419683 102419830 -39851614 - MIR SINE MIR -6 256 40 235 165 0 28 chr9 102419888 102420154 -39851290 + AluJo SINE Alu 1 298 -4 342 311 33 55 chr9 102420414 102420597 -39850847 + MARNA DNA Mariner 17 195 -391 255 299 30 0 chr9 102421390 102421457 -39849987 - MIR SINE MIR -95 113 45 201 326 172 31 chr9 102421652 102422035 -39849409 + L2 LINE L2 2415 2851 -463 315 272 83 106 chr9 102422664 102422965 -39848479 - L2 LINE L2 0 3272 2979 398 269 29 0 chr9 102424383 102424487 -39846957 + MIR SINE MIR 156 262 0 685 139 47 16 chr9 102424758 102424887 -39846557 - MER94 DNA DNA -1 133 1 248 347 0 0 chr9 102425098 102425170 -39846274 + L3 LINE CR1 192 263 -1314 214 359 55 60 chr9 102425625 102425842 -39845602 + L2 LINE L2 3028 3243 -29 187 307 214 36 chr9 102426275 102426415 -39845029 - L2 LINE L2 -9 3263 3099 27 0 0 0 chr9 102426834 102426861 -39844583 + AT_rich Low_complexity Low_complexity 1 27 0 265 322 49 35 chr9 102427150 102427293 -39844151 - L3 LINE CR1 -1397 180 36 222 355 165 47 chr9 102428172 102428493 -39842951 + L2 LINE L2 2897 3255 -17 * 273 236 264 36 chr9 102428489 102428629 -39842815 - L3 LINE CR1 -208 1369 1198 311 267 125 25 chr9 102428774 102428894 -39842550 - L2 LINE L2 -2 3270 3139 382 303 119 58 chr9 102428965 102429361 -39842083 - L3 LINE CR1 -605 972 553 28 71 0 0 chr9 102429443 102429499 -39841945 + AT_rich Low_complexity Low_complexity 1 56 0 189 231 26 0 chr9 102429969 102430008 -39841436 - L3 LINE CR1 -13 1564 1525 2639 10 3 0 chr9 102431445 102431735 -39839709 + AluYb8 SINE Alu 26 316 -2 337 276 192 58 chr9 102434292 102434553 -39836891 - L1MC/D LINE L1 -2174 5634 5339 29 0 0 0 chr9 102434572 102434601 -39836843 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 102435495 102435518 -39835926 + AT_rich Low_complexity Low_complexity 1 23 0 246 206 63 0 chr9 102435620 102435683 -39835761 - L1ME2 LINE L1 -19 6145 6079 1942 203 154 10 chr9 102435700 102436696 -39834748 - L1MD3 LINE L1 -18 6148 4856 38214 79 15 7 chr9 102436718 102442820 -39828624 + L1PA6 LINE L1 11 6152 -2 2506 244 69 24 chr9 102442815 102443640 -39827804 - L1MD3 LINE L1 -1286 4860 3999 * 2715 133 14 31 chr9 102443645 102444127 -39827317 - L1MA8 LINE L1 -253 6038 5565 269 143 0 0 chr9 102444227 102444276 -39827168 - L1MC4 LINE L1 -1339 6703 6655 240 170 0 0 chr9 102444292 102444339 -39827105 - LTR66 LTR ERVL -172 438 392 2541 97 26 8 chr9 102444342 102444723 -39826721 - L1P5 LINE L1 -380 5771 5384 289 254 8 46 chr9 102446004 102446134 -39825310 + CT-rich Low_complexity Low_complexity 2 126 0 941 174 36 0 chr9 102446525 102446720 -39824724 - L1MA8 LINE L1 -744 5402 5201 2565 172 25 27 chr9 102446752 102447332 -39824112 - L1M4 LINE L1 -743 6363 5803 5704 198 146 41 chr9 102447345 102447464 -39823980 - L1M4 LINE L1 -2390 4716 4611 1637 161 20 33 chr9 102447464 102447769 -39823675 + AluJo SINE Alu 1 301 -11 5704 198 146 41 chr9 102447769 102452175 -39819269 - L1M4 LINE L1 -2495 4611 1 688 297 117 4 chr9 102452191 102452440 -39819004 + L2 LINE L2 2591 2867 -447 326 341 72 29 chr9 102452628 102452766 -39818678 + L2 LINE L2 3121 3264 -8 413 257 30 0 chr9 102452858 102452959 -39818485 - MIR SINE MIR -70 192 89 859 139 49 67 chr9 102456040 102456088 -39815356 - L1MB7 LINE L1 0 6184 6137 1511 172 90 8 chr9 102456088 102456356 -39815088 - AluJb SINE Alu -22 290 1 859 139 49 67 chr9 102456356 102456434 -39815010 - L1MB7 LINE L1 -47 6137 6059 2083 117 0 10 chr9 102456434 102456725 -39814719 - AluSc SINE Alu -21 288 1 859 139 49 67 chr9 102456725 102456820 -39814624 - L1MB7 LINE L1 -125 6059 5966 304 321 146 26 chr9 102456878 102457146 -39814298 + L2 LINE L2 2102 2401 -913 2380 92 3 6 chr9 102457933 102458247 -39813197 + AluSq SINE Alu 1 313 0 952 130 245 0 chr9 102459166 102459350 -39812094 - MER46A DNA MER2_type -1 235 7 1164 224 126 0 chr9 102460065 102460351 -39811093 + L1MDa LINE L1 17 338 -6202 189 0 0 0 chr9 102460689 102460710 -39810734 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2248 221 78 25 chr9 102460861 102461499 -39809945 + L1ME3A LINE L1 5392 6063 -107 1310 204 93 46 chr9 102461501 102461588 -39809856 + MER58B DNA MER1_type 1 83 -2337 2172 89 6 22 chr9 102461588 102461902 -39809542 - AluSx SINE Alu -3 309 1 1310 204 93 46 chr9 102461902 102462137 -39809307 + MER58B DNA MER1_type 83 338 -3 1556 205 50 15 chr9 102462146 102462488 -39808956 - MLT1A1 LTR MaLR -11 354 1 1961 133 56 15 chr9 102462998 102463322 -39808122 - MER1B DNA MER1_type 0 337 1 191 271 0 17 chr9 102463344 102463403 -39808041 - MER5A DNA MER1_type 0 189 132 1448 161 0 0 chr9 102463806 102464029 -39807415 - AluJo SINE Alu -3 309 87 869 269 23 34 chr9 102464480 102464744 -39806700 - MIR SINE MIR 0 262 2 358 261 31 117 chr9 102465266 102465488 -39805956 + MIR3 SINE MIR 3 205 -3 399 254 53 26 chr9 102465964 102466078 -39805366 + L2 LINE L2 3189 3305 -8 838 282 42 17 chr9 102466227 102466514 -39804930 - L2 LINE L2 0 3313 3020 785 159 0 8 chr9 102466575 102466707 -39804737 + FLAM_C SINE Alu 1 131 -2 187 313 38 12 chr9 102467592 102467672 -39803772 + L2 LINE L2 3186 3267 -5 1941 206 44 24 chr9 102468385 102468841 -39802603 + LTR40c LTR ERVL 1 465 0 589 237 126 20 chr9 102469708 102469906 -39801538 + MIR SINE MIR 18 236 -26 1827 145 6 60 chr9 102470741 102471058 -39800386 - AluJo SINE Alu -12 300 1 1838 148 4 0 chr9 102471186 102471463 -39799981 + AluSx SINE Alu 1 278 -34 378 0 0 0 chr9 102471466 102471508 -39799936 + (CAA)n Simple_repeat Simple_repeat 1 42 0 749 214 35 15 chr9 102471521 102471722 -39799722 + L1MC4a LINE L1 5739 5943 -1865 250 270 0 0 chr9 102471735 102471798 -39799646 + (TA)n Simple_repeat Simple_repeat 2 64 0 286 206 168 19 chr9 102471832 102471939 -39799505 + L1MC4a LINE L1 6053 6175 -1633 1577 261 70 55 chr9 102472179 102472295 -39799149 + L1MC/D LINE L1 3349 3462 -2684 573 242 8 0 chr9 102472295 102472415 -39799029 + FLAM_A SINE Alu 1 121 -12 1577 261 70 55 chr9 102472415 102473192 -39798252 + L1MC/D LINE L1 3462 4256 -1890 378 263 183 0 chr9 102473753 102473939 -39797505 + L1MC/D LINE L1 5255 5474 -2334 204 267 0 0 chr9 102475786 102475831 -39795613 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 301 168 95 32 chr9 102475834 102475929 -39795515 - L1ME4a LINE L1 -39 6082 5982 347 186 47 0 chr9 102475929 102476015 -39795429 + HsTC2 DNA Tc2 656 745 -1153 * 751 216 168 34 chr9 102476012 102476309 -39795135 + HsTC2 DNA Tc2 1273 1785 -113 2605 165 43 17 chr9 102476312 102477121 -39794323 + L1M2 LINE L1 4959 5778 -522 2438 80 0 0 chr9 102477121 102477421 -39794023 + AluSc SINE Alu 1 300 -9 2605 165 43 17 chr9 102477421 102477447 -39793997 + L1M2 LINE L1 5778 5802 -498 1080 109 26 0 chr9 102477449 102477605 -39793839 + MER41B LTR ERV1 476 635 0 4238 128 30 11 chr9 102477605 102478343 -39793101 + MER41B-int LTR ERV1 1 1429 -5317 3968 139 67 13 chr9 102478339 102479703 -39791741 + MER41B-int LTR ERV1 1188 2864 -3082 * 9445 96 49 4 chr9 102479696 102481097 -39790347 + MER41B-int LTR ERV1 4023 5486 -460 1489 117 19 0 chr9 102481093 102481307 -39790137 + MER41B-int LTR ERV1 5729 5946 0 * 1165 167 32 23 chr9 102481307 102481336 -39790108 + HERVK14 LTR ERVK 5758 5788 -157 3403 111 35 20 chr9 102481336 102481875 -39789569 + MER41B LTR ERV1 1 547 -88 225 139 0 0 chr9 102481879 102481922 -39789522 + (A)n Simple_repeat Simple_repeat 1 43 0 365 194 14 14 chr9 102481949 102482021 -39789423 - L1PA16 LINE L1 -1547 4599 4528 * 3057 181 13 62 chr9 102482014 102482727 -39788717 + L1PA16 LINE L1 4616 5363 -803 2106 120 3 0 chr9 102482727 102483019 -39788425 + AluSq SINE Alu 21 313 0 3057 181 13 62 chr9 102483019 102483558 -39787886 + L1PA16 LINE L1 5363 5969 -197 2315 147 5 34 chr9 102483558 102483993 -39787451 + L1PA16 LINE L1 5743 6166 0 3057 181 13 62 chr9 102483993 102484182 -39787262 + L1PA16 LINE L1 5969 6166 0 4806 180 21 11 chr9 102484226 102485150 -39786294 + L1MA2 LINE L1 11 943 -6622 * 15023 154 23 23 chr9 102485144 102488580 -39782864 + L1MA2 LINE L1 2732 6166 -1557 504 86 0 25 chr9 102488580 102488661 -39782783 - MADE1 DNA Mariner 0 80 2 15023 154 23 23 chr9 102488661 102488701 -39782743 + L1MA2 LINE L1 6166 6204 -1519 2210 112 0 0 chr9 102488701 102489020 -39782424 + AluSc SINE Alu 1 309 0 15023 154 23 23 chr9 102489020 102490291 -39781153 + L1MA2 LINE L1 6204 7473 -250 2631 61 0 0 chr9 102490291 102490602 -39780842 + AluY SINE Alu 1 311 0 15023 154 23 23 chr9 102490602 102490786 -39780658 + L1MA2 LINE L1 7473 7672 -51 2206 110 0 0 chr9 102490786 102491086 -39780358 + AluSx SINE Alu 1 300 -12 15023 154 23 23 chr9 102491086 102491136 -39780308 + L1MA2 LINE L1 7672 7720 -3 661 138 34 15 chr9 102491145 102491344 -39780100 + L1MA5 LINE L1 6038 6297 -3 384 286 89 0 chr9 102491534 102491646 -39779798 - L2 LINE L2 0 3313 3192 378 181 64 32 chr9 102492342 102492436 -39779008 + MIR SINE MIR 47 143 -119 329 338 49 13 chr9 102492450 102492617 -39778827 + L2 LINE L2 2900 3071 -201 220 261 57 57 chr9 102492704 102492792 -39778652 + L2 LINE L2 3224 3311 -2 378 243 81 25 chr9 102493226 102493461 -39777983 + L1MD2 LINE L1 4187 4434 -1712 720 241 194 29 chr9 102493472 102493817 -39777627 + L1MD3 LINE L1 7586 7987 -8 2414 224 52 17 chr9 102493823 102494604 -39776840 + L1MD2 LINE L1 4382 5190 -956 * 2582 178 19 38 chr9 102494601 102495391 -39776053 + L1MB2 LINE L1 4706 5483 -697 361 91 26 3 chr9 102495395 102495483 -39775961 + FRAM/FAM SINE Alu 22 75 -100 1318 31 0 6 chr9 102495483 102495646 -39775798 + L1PA4 LINE L1 5991 6152 -3 3413 160 29 15 chr9 102495667 102496330 -39775114 + L1MB2 LINE L1 5477 6148 -23 1865 225 41 50 chr9 102496345 102496441 -39775003 + L1MD2 LINE L1 5197 5292 -874 1363 190 59 17 chr9 102496441 102496730 -39774714 + AluJb SINE Alu 1 301 -11 1865 225 41 50 chr9 102496730 102497651 -39773793 + L1MD2 LINE L1 5292 6161 -5 348 276 83 55 chr9 102498548 102498693 -39772751 + MIR3 SINE MIR 5 153 -55 314 44 0 22 chr9 102499619 102499664 -39771780 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 694 174 0 15 chr9 102500217 102500349 -39771095 - AluJb SINE Alu 0 312 183 1540 149 139 16 chr9 102500723 102501032 -39770412 - MER7A DNA MER2_type 0 346 2 1358 157 30 4 chr9 102501845 102502075 -39769369 + MER46A DNA MER2_type 1 236 0 217 322 67 11 chr9 102502204 102502294 -39769150 - L3 LINE CR1 -23 1554 1460 459 268 173 6 chr9 102502336 102502504 -39768940 + MIR SINE MIR 20 215 -47 1243 119 108 31 chr9 102502504 102502676 -39768768 + L1MA3 LINE L1 6022 6222 -83 2215 107 10 3 chr9 102502676 102502984 -39768460 - AluSx SINE Alu -2 310 1 1243 119 108 31 chr9 102502984 102503071 -39768373 + L1MA3 LINE L1 6222 6301 -4 455 271 49 0 chr9 102503432 102503554 -39767890 + MIR3 SINE MIR 38 165 -43 750 321 50 75 chr9 102503699 102504455 -39766989 - L2 LINE L2 0 3272 2544 258 295 143 0 chr9 102504573 102504678 -39766766 - L2 LINE L2 -27 3286 3167 1870 163 3 3 chr9 102505395 102505689 -39765755 - AluJo SINE Alu -18 294 1 523 239 89 44 chr9 102506229 102506409 -39765035 + MER5A DNA MER1_type 1 188 -1 1731 173 0 32 chr9 102506717 102507029 -39764415 + AluJo SINE Alu 1 302 -10 2257 80 0 14 chr9 102508474 102508761 -39762683 + AluSc SINE Alu 1 283 -26 485 203 6 0 chr9 102508772 102508949 -39762495 + (TA)n Simple_repeat Simple_repeat 2 179 0 328 214 31 41 chr9 102509186 102509284 -39762160 + LTR48B LTR ERV1 1 97 -547 * 1356 203 105 35 chr9 102509261 102509673 -39761771 + MER39 LTR ERV1 260 585 0 573 124 10 0 chr9 102509928 102510025 -39761419 - L1MA4 LINE L1 -84 6216 6119 2052 142 3 7 chr9 102510104 102510407 -39761037 + AluJo SINE Alu 1 302 -10 237 369 81 7 chr9 102511469 102511618 -39759826 + L2 LINE L2 3152 3311 -2 212 295 105 21 chr9 102511836 102511931 -39759513 - L3 LINE CR1 -18 1559 1457 547 208 19 0 chr9 102511959 102512065 -39759379 + Tigger3(Golem) DNA MER2_type 1 108 -2921 3665 127 85 1 chr9 102512065 102512749 -39758695 + Tigger3(Golem) DNA MER2_type 2285 3025 -4 907 131 89 0 chr9 102512749 102512940 -39758504 + L1MA9 LINE L1 6099 6306 -6 529 296 148 0 chr9 102513280 102513442 -39758002 + MER5A DNA MER1_type 4 189 0 7286 22 0 356 chr9 102514470 102516621 -39754823 + SVA Other Other 1 1386 0 863 137 0 0 chr9 102516796 102516913 -39754531 + AluSg/x SINE Alu 170 286 -26 292 224 60 99 chr9 102517934 102518135 -39753309 + L1MC5 LINE L1 7247 7439 -522 353 205 143 36 chr9 102518148 102518260 -39753184 - LTR16C LTR ERVL 0 491 368 1175 139 0 0 chr9 102518407 102518572 -39752872 - AluJb SINE Alu -11 301 137 2242 110 0 3 chr9 102518951 102519250 -39752194 + AluSq SINE Alu 1 298 -15 2054 100 7 0 chr9 102519841 102520111 -39751333 - AluSq SINE Alu -18 295 24 539 268 73 18 chr9 102520713 102520877 -39750567 + MIR3 SINE MIR 28 200 -8 621 216 154 13 chr9 102521096 102521323 -39750121 + MER112 DNA MER1_type 1 259 -1 238 299 92 22 chr9 102521332 102521516 -39749928 - MARNA DNA Mariner -117 469 273 387 153 141 0 chr9 102521558 102521643 -39749801 + Charlie3 DNA MER1_type 2616 2712 0 30348 63 16 10 chr9 102521667 102525489 -39745955 + HERVL LTR ERVL 1562 5357 -297 2165 121 7 0 chr9 102525489 102525786 -39745658 + AluSx SINE Alu 1 299 -13 2180 128 3 0 chr9 102525788 102526092 -39745352 + AluSx SINE Alu 3 307 -5 30348 63 16 10 chr9 102526092 102526332 -39745112 + HERVL LTR ERVL 5357 5654 0 3065 97 51 2 chr9 102526332 102526727 -39744717 + MLT2A2 LTR ERVL 1 420 -33 399 21 0 0 chr9 102526727 102526775 -39744669 + (CA)n Simple_repeat Simple_repeat 2 49 0 3065 97 51 2 chr9 102526775 102526811 -39744633 + MLT2A2 LTR ERVL 420 453 0 31 26 0 0 chr9 102526900 102526938 -39744506 + AT_rich Low_complexity Low_complexity 1 38 0 1605 165 44 14 chr9 102526974 102527271 -39744173 + AluJo SINE Alu 1 306 -6 321 279 53 118 chr9 102527499 102527761 -39743683 - L3 LINE CR1 -75 1502 1258 575 304 52 66 chr9 102528331 102528865 -39742579 + L1MC4a LINE L1 2192 2676 -3539 359 278 105 44 chr9 102528899 102529403 -39742041 + L1MC4a LINE L1 3959 4493 -1722 659 67 0 0 chr9 102529609 102529699 -39741745 + L1PA8 LINE L1 6078 6167 -5 749 262 29 0 chr9 102529857 102530029 -39741415 + MER8 DNA MER2_type 1 177 -62 411 111 0 16 chr9 102530076 102530139 -39741305 - Tigger2 DNA MER2_type -2656 62 1 824 230 27 14 chr9 102530495 102530717 -39740727 + L1MC4a LINE L1 5737 5961 -1916 2376 97 3 0 chr9 102532931 102533230 -39738214 + AluSq SINE Alu 1 300 -13 392 321 104 7 chr9 102533861 102534074 -39737370 - MIR SINE MIR -21 241 6 274 212 12 71 chr9 102534248 102534333 -39737111 - MIR SINE MIR -59 203 124 181 324 206 0 chr9 102534386 102534454 -39736990 - MIR SINE MIR -85 123 42 183 169 0 153 chr9 102534777 102534836 -39736608 - L2 LINE L2 0 3313 3264 * 326 309 27 80 chr9 102534802 102534993 -39736451 - MIR SINE MIR -10 252 74 328 169 15 0 chr9 102535140 102535205 -39736239 + L1ME4a LINE L1 5944 6009 -112 22 0 0 0 chr9 102535473 102535495 -39735949 + AT_rich Low_complexity Low_complexity 1 22 0 681 321 0 5 chr9 102535583 102535773 -39735671 + L2 LINE L2 2833 3021 -292 2094 198 65 36 chr9 102536317 102536611 -39734833 + Tigger7 DNA MER2_type 56 340 -2247 2259 108 0 3 chr9 102536611 102536917 -39734527 + AluSx SINE Alu 1 305 -7 2094 198 65 36 chr9 102536917 102537245 -39734199 + Tigger7 DNA MER2_type 340 2587 0 2264 108 0 0 chr9 102537780 102538075 -39733369 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr9 102538200 102538226 -39733218 + AT_rich Low_complexity Low_complexity 1 26 0 379 228 269 21 chr9 102539062 102539207 -39732237 - MER5A DNA MER1_type 0 189 9 663 296 84 31 chr9 102540024 102540406 -39731038 + L1ME LINE L1 5338 5657 -464 1883 139 4 0 chr9 102540675 102540955 -39730489 + AluJb SINE Alu 1 281 -31 1312 249 144 27 chr9 102541003 102541565 -39729879 + L1MC5 LINE L1 5288 5915 -1893 2241 102 0 7 chr9 102541689 102541992 -39729452 + AluSx SINE Alu 1 301 -11 1680 154 24 34 chr9 102542007 102542305 -39729139 + AluJb SINE Alu 8 302 -10 28 61 0 0 chr9 102542402 102542451 -39728993 + AT_rich Low_complexity Low_complexity 1 49 0 1134 214 51 43 chr9 102542511 102542903 -39728541 + L1MC5 LINE L1 7333 7727 -234 340 237 141 59 chr9 102542911 102543046 -39728398 - MER5B DNA MER1_type -32 146 1 282 229 12 0 chr9 102543659 102543742 -39727702 + (TA)n Simple_repeat Simple_repeat 1 84 0 392 248 14 4 chr9 102545077 102545169 -39726275 + MIR SINE MIR 24 114 -103 206 152 0 43 chr9 102546191 102546237 -39725207 + (GGCTG)n Simple_repeat Simple_repeat 2 45 0 244 326 12 12 chr9 102547571 102547657 -39723787 - MIR SINE MIR -158 104 19 350 250 0 0 chr9 102547804 102547868 -39723576 - L2 LINE L2 -5 3267 3204 890 66 49 23 chr9 102547882 102548408 -39723036 + (TA)n Simple_repeat Simple_repeat 1 722 0 294 217 100 0 chr9 102548514 102548574 -39722870 + L2 LINE L2 3248 3313 0 257 360 40 0 chr9 102548610 102548710 -39722734 - MIR SINE MIR -83 125 22 493 274 45 38 chr9 102549074 102549231 -39722213 + MER102b DNA MER1_type 179 336 -5 241 203 16 62 chr9 102549332 102549396 -39722048 - L3 LINE CR1 -106 1471 1411 1595 112 4 29 chr9 102549401 102549643 -39721801 - AluSg/x SINE Alu -5 305 70 1739 170 62 0 chr9 102549872 102550160 -39721284 + 7SLRNA srpRNA srpRNA 1 306 -14 2261 100 0 0 chr9 102550175 102550466 -39720978 - AluSx SINE Alu -21 291 1 912 212 6 0 chr9 102550474 102550644 -39720800 - AluSg/x SINE Alu -13 297 127 2012 135 0 3 chr9 102550658 102550954 -39720490 + AluSx SINE Alu 1 295 -17 471 107 0 0 chr9 102550967 102551042 -39720402 + (GGGGA)n Simple_repeat Simple_repeat 1 75 0 872 148 0 0 chr9 102551042 102551164 -39720280 - FLAM_C SINE Alu -21 122 1 181 225 191 56 chr9 102551438 102551527 -39719917 - MIR SINE MIR -55 153 53 561 213 0 0 chr9 102551570 102551678 -39719766 - FLAM_C SINE Alu -35 108 1 23 0 0 0 chr9 102552516 102552539 -39718905 + AT_rich Low_complexity Low_complexity 1 23 0 1025 337 137 21 chr9 102552848 102553797 -39717647 + L2 LINE L2 713 1771 -1543 316 268 117 78 chr9 102553938 102554117 -39717327 - MLT1J LTR MaLR -89 422 237 374 293 38 25 chr9 102554153 102554310 -39717134 - MLT1J LTR MaLR -351 160 2 399 246 123 37 chr9 102554391 102554578 -39716866 - L1ME3A LINE L1 -6 6164 5962 785 292 169 38 chr9 102554711 102555220 -39716224 + L2 LINE L2 2720 3313 0 210 71 0 0 chr9 102555294 102555322 -39716122 + (AATTG)n Simple_repeat Simple_repeat 5 32 0 615 311 71 17 chr9 102556427 102556665 -39714779 + MIR SINE MIR 1 251 -11 2384 63 0 3 chr9 102556969 102557280 -39714164 - AluSp SINE Alu 0 310 1 699 215 133 56 chr9 102557493 102557726 -39713718 - MIR SINE MIR 0 262 12 963 202 75 52 chr9 102557877 102558184 -39713260 - Charlie4a DNA MER1_type -6 502 189 379 304 80 11 chr9 102558226 102558373 -39713071 - MIR SINE MIR -63 145 2 1992 105 60 0 chr9 102559291 102559585 -39711859 - AluSx SINE Alu 0 310 1 1503 97 35 18 chr9 102559882 102560108 -39711336 + MER30 DNA MER1_type 1 230 0 315 0 0 0 chr9 102560872 102560907 -39710537 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1600 98 59 4 chr9 102560910 102561166 -39710278 - L1MA6 LINE L1 -6 6294 6025 2436 213 68 80 chr9 102561416 102561705 -39709739 - L1ME1 LINE L1 -5 6555 6264 2061 138 0 13 chr9 102561705 102562017 -39709427 - AluJb SINE Alu -2 310 3 2436 213 68 80 chr9 102562017 102562610 -39708834 - L1ME1 LINE L1 -296 6264 5684 6476 29 13 1 chr9 102562626 102563394 -39708050 - L1PA5 LINE L1 -8 6146 5370 2015 152 3 16 chr9 102563405 102563721 -39707723 - AluSx SINE Alu 0 312 1 957 179 62 26 chr9 102563739 102564012 -39707432 - L1ME1 LINE L1 -849 5691 5409 23 0 0 0 chr9 102564912 102564935 -39706509 + GC_rich Low_complexity Low_complexity 1 23 0 257 153 0 0 chr9 102564989 102565048 -39706396 - L1ME1 LINE L1 -1118 5422 5364 1407 199 109 163 chr9 102565049 102565383 -39706061 + MLT1A1 LTR MaLR 1 351 -39 837 152 0 0 chr9 102565383 102565515 -39705929 - FLAM_C SINE Alu -1 132 1 2190 100 4 0 chr9 102565520 102565822 -39705622 - AluSq SINE Alu 0 303 1 1407 199 109 163 chr9 102565822 102565892 -39705552 + MLT1A1 LTR MaLR 355 390 0 228 86 0 0 chr9 102565917 102565952 -39705492 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 22 0 0 0 chr9 102565979 102566001 -39705443 + AT_rich Low_complexity Low_complexity 1 22 0 2141 103 0 0 chr9 102566001 102566272 -39705172 - AluSq SINE Alu -40 273 3 990 247 37 0 chr9 102566275 102566571 -39704873 - L1ME1 LINE L1 -1224 5316 5010 27 29 0 0 chr9 102566623 102566657 -39704787 + AT_rich Low_complexity Low_complexity 1 34 0 1064 200 38 34 chr9 102566661 102566877 -39704567 - MLT1E1 LTR MaLR 0 654 435 2126 92 3 10 chr9 102566877 102567169 -39704275 - AluY SINE Alu -19 292 3 1064 200 38 34 chr9 102567169 102567187 -39704257 - MLT1E1 LTR MaLR -219 435 419 1805 173 58 9 chr9 102568401 102568731 -39702713 - MLT1E1 LTR MaLR -308 346 1 2787 236 93 38 chr9 102568735 102569886 -39701558 - L1ME1 LINE L1 -2685 3855 2769 2454 80 0 3 chr9 102569886 102570197 -39701247 - AluY SINE Alu -1 310 1 2787 236 93 38 chr9 102570197 102570399 -39701045 - L1ME1 LINE L1 -3771 2769 2580 3586 178 24 23 chr9 102570399 102571146 -39700298 - L1MB8 LINE L1 0 6178 5431 1942 131 0 11 chr9 102571146 102571420 -39700024 - AluSx SINE Alu -39 273 3 2787 236 93 38 chr9 102571420 102571491 -39699953 - L1ME1 LINE L1 -3960 2580 2514 348 24 0 0 chr9 102571491 102571532 -39699912 + (TG)n Simple_repeat Simple_repeat 1 41 0 2787 236 93 38 chr9 102571532 102571755 -39699689 - L1ME1 LINE L1 -4026 2514 2110 759 102 25 8 chr9 102571758 102571876 -39699568 + FLAM_A SINE Alu 13 132 -10 1028 285 49 5 chr9 102571926 102572295 -39699149 - L1ME1 LINE L1 -5251 1292 908 714 302 70 45 chr9 102572561 102572962 -39698482 - L1ME1 LINE L1 -6096 444 34 2412 99 0 0 chr9 102572995 102573299 -39698145 - AluSq SINE Alu -9 304 1 194 310 0 42 chr9 102573304 102573375 -39698069 + L2 LINE L2 3234 3301 -12 429 289 130 0 chr9 102573451 102573624 -39697820 + MIR SINE MIR 37 238 -24 1305 167 0 0 chr9 102574311 102574509 -39696935 + AluJb SINE Alu 85 282 -30 180 0 0 0 chr9 102574511 102574531 -39696913 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 21 36 0 0 chr9 102575089 102575117 -39696327 + AT_rich Low_complexity Low_complexity 1 28 0 227 264 173 45 chr9 102575314 102575424 -39696020 + L3 LINE CR1 832 955 -622 189 271 71 14 chr9 102575744 102575814 -39695630 + L3 LINE CR1 1012 1085 -492 668 305 32 0 chr9 102575929 102576178 -39695266 + L1MEd LINE L1 568 824 -5295 1272 207 121 0 chr9 102576217 102576473 -39694971 + AluJo SINE Alu 2 288 -14 30 0 0 0 chr9 102576473 102576503 -39694941 + AT_rich Low_complexity Low_complexity 1 30 0 1618 164 39 4 chr9 102576513 102576637 -39694807 + AluJb SINE Alu 1 119 -193 186 43 0 0 chr9 102576637 102576660 -39694784 + (CA)n Simple_repeat Simple_repeat 2 24 0 1618 164 39 4 chr9 102576660 102576816 -39694628 + AluJb SINE Alu 119 291 -21 22 0 0 0 chr9 102576825 102576847 -39694597 + AT_rich Low_complexity Low_complexity 1 22 0 456 337 64 41 chr9 102576926 102577362 -39694082 + L1ME LINE L1 43 488 -5582 234 250 144 10 chr9 102577386 102577490 -39693954 - L1 LINE L1 -1115 5031 4914 185 250 0 0 chr9 102577781 102577817 -39693627 - L2 LINE L2 -5 3308 3273 331 291 126 0 chr9 102578058 102578161 -39693283 - L2 LINE L2 -1 3271 3156 205 297 133 16 chr9 102579410 102579538 -39691906 + L2 LINE L2 3167 3309 -4 348 64 0 0 chr9 102579540 102579587 -39691857 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 291 231 143 11 chr9 102579751 102579842 -39691602 + MIR SINE MIR 109 211 -51 252 244 64 13 chr9 102579937 102580015 -39691429 - MIR3 SINE MIR -6 202 121 2311 105 0 0 chr9 102580136 102580442 -39691002 + AluSx SINE Alu 1 306 -6 225 0 0 0 chr9 102580652 102580677 -39690767 + (TG)n Simple_repeat Simple_repeat 2 26 0 983 269 59 30 chr9 102580822 102581078 -39690366 + L1ME3 LINE L1 5345 5617 -545 420 20 0 0 chr9 102581078 102581127 -39690317 + (CA)n Simple_repeat Simple_repeat 2 50 0 983 269 59 30 chr9 102581127 102581241 -39690203 + L1ME3 LINE L1 5617 5726 -436 5300 116 2 6 chr9 102581264 102582058 -39689386 - L1PB1 LINE L1 -8 6143 5353 1212 247 125 12 chr9 102582069 102582470 -39688974 + L1ME3 LINE L1 5711 6156 -6 925 183 44 0 chr9 102582651 102582831 -39688613 - MER5A DNA MER1_type 0 189 2 226 329 224 14 chr9 102582964 102583326 -39688118 - L2 LINE L2 -907 2407 1970 202 329 90 32 chr9 102583388 102583543 -39687901 - L2 LINE L2 -1354 1960 1797 22 0 0 0 chr9 102583600 102583622 -39687822 + AT_rich Low_complexity Low_complexity 1 22 0 749 194 89 32 chr9 102583704 102583952 -39687492 - L1MC5 LINE L1 -204 7757 7496 2118 128 0 0 chr9 102584073 102584362 -39687082 + AluSx SINE Alu 3 291 -21 239 222 206 0 chr9 102584460 102584523 -39686921 - MIR3 SINE MIR -9 199 124 361 255 82 92 chr9 102584786 102584970 -39686474 + MIR SINE MIR 3 184 -78 2269 110 0 0 chr9 102585437 102585729 -39685715 + AluSq SINE Alu 1 292 -21 2306 110 3 0 chr9 102586009 102586319 -39685125 - AluSx SINE Alu -1 311 1 381 325 182 10 chr9 102586504 102586889 -39684555 + L2 LINE L2 1932 2382 -932 1133 156 42 97 chr9 102586925 102586974 -39684470 - L1MB5 LINE L1 -8 6166 6116 1909 150 4 4 chr9 102586974 102587254 -39684190 - AluJb SINE Alu -30 282 3 1133 156 42 97 chr9 102587254 102587492 -39683952 - L1MB5 LINE L1 -58 6116 5895 2748 78 100 5 chr9 102587495 102587904 -39683540 - LTR7 LTR ERV1 -2 448 1 2229 108 47 13 chr9 102587904 102588284 -39683160 - HERVH LTR ERV1 0 7713 7321 1322 130 19 0 chr9 102588281 102588497 -39682947 - HERVH LTR ERV1 -1894 5819 5600 * 7519 119 12 2 chr9 102588495 102590189 -39681255 - HERVH LTR ERV1 -2566 5147 3505 849 140 7 0 chr9 102590193 102590343 -39681101 - HERVH LTR ERV1 -4423 3290 3140 * 15596 106 19 14 chr9 102590322 102593427 -39678017 - HERVH LTR ERV1 -4718 2995 1 2650 81 106 5 chr9 102593429 102593836 -39677608 - LTR7 LTR ERV1 -2 448 1 616 134 0 9 chr9 102593837 102593949 -39677495 - L1MB5 LINE L1 -278 5896 5786 27 0 0 0 chr9 102593960 102593987 -39677457 + AT_rich Low_complexity Low_complexity 1 27 0 485 191 135 14 chr9 102594107 102594248 -39677196 - L1MB5 LINE L1 -370 5810 5653 219 286 16 0 chr9 102594292 102594355 -39677089 + L2 LINE L2 3246 3309 -4 188 234 85 0 chr9 102594434 102594481 -39676963 + MIR SINE MIR 54 104 -104 1319 233 169 4 chr9 102594673 102595141 -39676303 + L1MC4a LINE L1 5334 5878 -1930 1611 179 60 27 chr9 102595215 102595516 -39675928 + AluJo SINE Alu 1 311 -1 888 247 34 115 chr9 102598305 102598523 -39672921 - L2 LINE L2 -228 3085 2905 1843 153 0 11 chr9 102598523 102598798 -39672646 + AluJo SINE Alu 17 288 -24 888 247 34 115 chr9 102598798 102599003 -39672441 - L2 LINE L2 -408 2905 2685 514 295 220 20 chr9 102599016 102599362 -39672082 - L3 LINE CR1 -356 1221 807 240 362 11 0 chr9 102599592 102599686 -39671758 - L3 LINE CR1 -784 793 699 216 97 0 0 chr9 102599909 102599940 -39671504 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 243 0 0 0 chr9 102600319 102600346 -39671098 + (TG)n Simple_repeat Simple_repeat 2 28 0 904 252 112 68 chr9 102600594 102600919 -39670525 + L1MC5 LINE L1 5213 5522 -624 1603 196 87 16 chr9 102600919 102601286 -39670158 - MSTD LTR MaLR -3 393 1 904 252 112 68 chr9 102601286 102601473 -39669971 + L1MC5 LINE L1 5522 5699 -447 1606 177 9 48 chr9 102601473 102601789 -39669655 - AluJb SINE Alu -8 304 1 904 252 112 68 chr9 102601789 102602246 -39669198 + L1MC5 LINE L1 5699 6134 -12 2262 91 17 10 chr9 102602246 102602543 -39668901 + AluSx SINE Alu 3 301 -11 904 252 112 68 chr9 102602543 102602642 -39668802 + L1MC5 LINE L1 6134 4819 -1327 2201 123 0 3 chr9 102602642 102602951 -39668493 - AluSx SINE Alu -4 308 1 904 252 112 68 chr9 102602951 102603563 -39667881 + L1MC5 LINE L1 4818 5401 -745 1708 164 0 7 chr9 102603571 102603846 -39667598 - AluSx SINE Alu -9 303 31 237 65 0 0 chr9 102604227 102604258 -39667186 + (TA)n Simple_repeat Simple_repeat 2 32 0 446 204 160 39 chr9 102604269 102604475 -39666969 + L1MC4a LINE L1 5679 5909 -1899 29 0 0 0 chr9 102604483 102604512 -39666932 + AT_rich Low_complexity Low_complexity 1 29 0 2565 48 3 7 chr9 102604568 102604878 -39666566 - AluY SINE Alu -2 309 1 568 303 60 48 chr9 102605691 102605942 -39665502 + MIR SINE MIR 8 261 -1 2161 161 61 5 chr9 102606034 102606239 -39665205 + MSTB1 LTR MaLR 1 193 -239 186 43 0 0 chr9 102606239 102606262 -39665182 + (TC)n Simple_repeat Simple_repeat 2 24 0 2161 161 61 5 chr9 102606262 102606465 -39664979 + MSTB1 LTR MaLR 193 432 0 222 327 73 9 chr9 102607452 102607562 -39663882 - L2 LINE L2 -6 3266 3150 1380 91 0 0 chr9 102608115 102608290 -39663154 + AluSg/x SINE Alu 130 304 -8 1857 113 60 21 chr9 102608424 102608706 -39662738 + AluSx SINE Alu 18 310 -2 354 45 0 0 chr9 102608927 102608971 -39662473 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 674 274 60 51 chr9 102609591 102609905 -39661539 - MLT1L LTR MaLR -46 569 253 1176 82 0 0 chr9 102610006 102610153 -39661291 + AluSg/x SINE Alu 146 292 -17 306 248 13 94 chr9 102610154 102610303 -39661141 - MLT1L LTR MaLR -478 137 1 22 0 0 0 chr9 102610498 102610520 -39660924 + AT_rich Low_complexity Low_complexity 1 22 0 1260 257 117 40 chr9 102610715 102611402 -39660042 - L2 LINE L2 0 3313 2552 930 114 41 77 chr9 102611426 102611672 -39659772 - L1MA8 LINE L1 -2 6289 6053 979 211 65 117 chr9 102611759 102612409 -39659035 - L1MC5 LINE L1 -47 7914 7299 843 123 7 0 chr9 102612420 102612558 -39658886 - L1MA3 LINE L1 0 6305 6167 1320 184 7 14 chr9 102612643 102612926 -39658518 - L1MC5 LINE L1 -721 7240 6960 1007 218 25 68 chr9 102612971 102613297 -39658147 - L1MC5 LINE L1 -1017 6944 6633 319 267 171 29 chr9 102613432 102613537 -39657907 - MIR SINE MIR -120 142 23 1325 194 0 51 chr9 102613576 102613849 -39657595 + AluJb SINE Alu 37 295 -17 1493 257 32 62 chr9 102613982 102614271 -39657173 + L2 LINE L2 2499 2795 -518 1780 160 50 0 chr9 102614271 102614552 -39656892 + AluSx SINE Alu 1 295 -17 1493 257 32 62 chr9 102614552 102615105 -39656339 + L2 LINE L2 2795 3313 0 1736 180 6 31 chr9 102617588 102617905 -39653539 + AluJb SINE Alu 1 309 -3 320 265 144 128 chr9 102618079 102618385 -39653059 - L2 LINE L2 -2 3270 2960 1781 159 16 66 chr9 102618441 102618806 -39652638 + MER7A DNA MER2_type 1 345 -1 339 289 91 58 chr9 102619136 102619344 -39652100 + MIR SINE MIR 3 217 -45 225 382 132 0 chr9 102619543 102619679 -39651765 + L2 LINE L2 3118 3271 -1 2515 235 63 47 chr9 102620447 102620759 -39650685 + L1ME LINE L1 145 451 -5945 2292 115 0 3 chr9 102620759 102621064 -39650380 + AluSx SINE Alu 1 304 -8 2515 235 63 47 chr9 102621064 102621945 -39649499 + L1ME LINE L1 451 1399 -4997 2185 112 7 0 chr9 102621945 102622239 -39649205 + AluSx SINE Alu 1 296 -16 2515 235 63 47 chr9 102622239 102622311 -39649133 + L1ME LINE L1 1399 1468 -4928 2057 135 3 3 chr9 102623784 102624088 -39647356 - AluSg SINE Alu -6 304 1 29463 99 10 28 chr9 102624350 102630599 -39640845 + L1PA7 LINE L1 215 6469 0 462 276 79 3 chr9 102630590 102630820 -39640624 + L1M1 LINE L1 2738 3059 -4582 * 436 301 40 25 chr9 102630812 102630823 -39640621 + L1ME LINE L1 1770 1779 -4617 * 2165 121 10 3 chr9 102630823 102631129 -39640315 + AluSx SINE Alu 1 308 -4 436 301 40 25 chr9 102631129 102631442 -39640002 + L1ME LINE L1 1779 2099 -4297 470 261 37 52 chr9 102631471 102631605 -39639839 - MER5B DNA MER1_type -40 138 7 21002 109 10 45 chr9 102631992 102638105 -39633339 - L1P3 LINE L1 -354 5818 12 2117 148 0 0 chr9 102638163 102638474 -39632970 - AluSx SINE Alu -1 311 1 796 297 46 19 chr9 102638529 102639094 -39632350 - L1MEd LINE L1 -909 1581 895 702 280 56 39 chr9 102639168 102639579 -39631865 + L1ME LINE L1 5372 5789 -373 27 29 0 0 chr9 102639856 102639890 -39631554 + AT_rich Low_complexity Low_complexity 1 34 0 1189 166 6 0 chr9 102639986 102640161 -39631283 + AluJo SINE Alu 1 176 -136 664 275 30 4 chr9 102640508 102640744 -39630700 - L1ME2 LINE L1 -9 6155 5914 387 73 0 0 chr9 102640782 102640837 -39630607 + (TA)n Simple_repeat Simple_repeat 1 55 0 11616 192 39 38 chr9 102640839 102641432 -39630012 - L1PB3 LINE L1 -7 6863 6273 2069 116 0 27 chr9 102641432 102641733 -39629711 - AluSg1 SINE Alu -16 293 1 11616 192 39 38 chr9 102641733 102642800 -39628644 - L1PB3 LINE L1 -597 6273 5209 2259 111 24 0 chr9 102642800 102643098 -39628346 - AluSx SINE Alu -7 305 1 11616 192 39 38 chr9 102643098 102645036 -39626408 - L1PB3 LINE L1 -1661 5209 3276 787 160 0 8 chr9 102645036 102645167 -39626277 - FLAM_C SINE Alu -2 131 2 11616 192 39 38 chr9 102645167 102646131 -39625313 - L1PB3 LINE L1 -3594 3276 2295 1986 161 10 0 chr9 102646131 102646436 -39625008 - AluJo SINE Alu -4 308 1 11616 192 39 38 chr9 102646436 102647322 -39624122 - L1PB3 LINE L1 -4575 2295 1412 645 262 5 0 chr9 102647324 102647515 -39623929 - L1PB3 LINE L1 -6669 194 3 324 0 0 0 chr9 102647527 102647563 -39623881 + (TG)n Simple_repeat Simple_repeat 2 37 0 1995 207 43 40 chr9 102647563 102648167 -39623277 - L1ME2 LINE L1 -242 5922 5317 1761 189 3 7 chr9 102648257 102648558 -39622886 - AluJo SINE Alu -12 300 1 667 118 0 0 chr9 102648621 102648723 -39622721 - L1MB4 LINE L1 -14 6166 6065 834 209 11 70 chr9 102648809 102649096 -39622348 - L1ME1 LINE L1 -118 6546 6277 497 179 0 0 chr9 102649099 102649177 -39622267 - AluJ/FLAM SINE Alu -220 92 15 1558 199 53 51 chr9 102649224 102649656 -39621788 - L1ME1 LINE L1 -380 6284 5852 763 233 29 92 chr9 102649655 102650002 -39621442 - L1ME1 LINE L1 -1822 4822 4498 * 310 236 14 0 chr9 102650005 102650077 -39621367 - LTR41 LTR ERVL -114 659 587 232 194 16 16 chr9 102650404 102650466 -39620978 - LTR41 LTR ERVL -711 62 1 433 217 8 8 chr9 102650470 102650590 -39620854 - L1ME1 LINE L1 -2154 4490 4371 706 158 0 18 chr9 102650627 102650741 -39620703 - FLAM_A SINE Alu -25 117 6 2147 126 0 3 chr9 102650757 102651051 -39620393 - AluSx SINE Alu -19 293 1 922 223 66 77 chr9 102651051 102651504 -39619940 - L1ME1 LINE L1 -2292 4352 3905 1794 155 51 32 chr9 102651504 102651879 -39619565 - LTR39 LTR ERV1 -401 382 1 62 26 0 0 chr9 102651919 102651995 -39619449 + AT_rich Low_complexity Low_complexity 1 76 0 335 177 25 13 chr9 102652025 102652104 -39619340 - L1ME1 LINE L1 -3120 3524 3445 1819 206 57 12 chr9 102652153 102652555 -39618889 - MER21B LTR ERV1 -21 842 423 770 182 0 14 chr9 102652556 102652699 -39618745 + FLAM_C SINE Alu 3 143 0 1388 166 75 63 chr9 102652709 102653168 -39618276 - MER39 LTR ERV1 -203 504 111 756 115 27 104 chr9 102653148 102653331 -39618113 - MER21A LTR ERV1 -758 173 5 * 918 236 153 73 chr9 102653333 102653550 -39617894 - L1MC4 LINE L1 -259 7783 7585 2134 90 29 29 chr9 102653550 102653862 -39617582 - AluSp SINE Alu 0 313 2 2266 107 0 0 chr9 102653863 102654154 -39617290 - AluSc SINE Alu -18 291 1 918 236 153 73 chr9 102654154 102654425 -39617019 - L1MC4 LINE L1 -456 7586 7254 819 199 40 34 chr9 102654425 102654689 -39616755 - L1ME1 LINE L1 -3788 2856 2593 1167 272 50 14 chr9 102654822 102655564 -39615880 - L1ME1 LINE L1 -4832 1710 1014 326 241 25 111 chr9 102655724 102655923 -39615521 - L1ME1 LINE L1 -5539 1095 914 258 364 47 0 chr9 102655925 102656054 -39615390 + L2 LINE L2 2556 2690 -624 1205 266 9 21 chr9 102656208 102656539 -39614905 - LTR40a LTR ERVL -118 401 75 291 156 39 26 chr9 102657345 102657422 -39614022 + LTR33A LTR ERVL 446 523 0 288 371 48 12 chr9 102657422 102657589 -39613855 - L2 LINE L2 -234 3038 2866 232 250 36 0 chr9 102657650 102657706 -39613738 + CT-rich Low_complexity Low_complexity 1 58 0 2154 103 0 0 chr9 102658610 102658882 -39612562 - AluSx SINE Alu -11 301 30 448 253 75 0 chr9 102658947 102659093 -39612351 - MER103 DNA DNA -1 165 9 286 178 0 0 chr9 102659191 102659236 -39612208 - MIR SINE MIR -57 151 107 204 231 0 19 chr9 102659257 102659309 -39612135 + L2 LINE L2 3220 3270 -2 * 213 286 111 0 chr9 102659302 102659365 -39612079 - MIR SINE MIR -100 108 39 329 279 88 7 chr9 102660905 102661041 -39610403 + L1ME4a LINE L1 5970 6116 -5 3082 208 42 46 chr9 102661069 102661945 -39609499 - L1MC4 LINE L1 0 8042 7170 1920 152 3 0 chr9 102661951 102662282 -39609162 - AluSx SINE Alu 0 332 1 271 266 161 40 chr9 102663647 102663771 -39607673 - MIR SINE MIR -122 140 2 369 246 55 18 chr9 102664000 102664110 -39607334 - MIR3 SINE MIR 0 208 95 2646 55 0 0 chr9 102664178 102664485 -39606959 + AluY SINE Alu 1 307 -4 257 325 44 44 chr9 102664691 102664805 -39606639 + L2 LINE L2 2968 3081 -191 211 268 14 56 chr9 102665399 102665470 -39605974 + L2 LINE L2 3246 3313 0 444 273 91 8 chr9 102665483 102665615 -39605829 - MER5B DNA MER1_type 0 178 36 825 189 86 11 chr9 102665649 102665824 -39605620 + MER5A DNA MER1_type 1 188 -1 202 313 50 0 chr9 102667097 102667177 -39604267 + L2 LINE L2 2212 2295 -1019 212 335 106 53 chr9 102667269 102667558 -39603886 + L2 LINE L2 2444 2761 -553 1952 144 21 50 chr9 102667558 102667934 -39603510 - MLT1A1 LTR MaLR 0 365 1 212 335 106 53 chr9 102667934 102668041 -39603403 + L2 LINE L2 2761 2861 -453 821 142 8 15 chr9 102668060 102668194 -39603250 - FLAM_C SINE Alu 0 133 1 1578 219 90 7 chr9 102668247 102668668 -39602776 - LTR40c LTR ERVL -9 456 1 7846 249 52 39 chr9 102668697 102671135 -39600309 - HERVL40 LTR ERVL -48 5482 3013 786 237 33 24 chr9 102671236 102671447 -39599997 - HERVL40 LTR ERVL -4377 1153 941 2294 122 0 0 chr9 102671717 102672029 -39599415 + AluSx SINE Alu 1 312 0 1471 210 54 46 chr9 102672067 102672528 -39598916 - LTR40c LTR ERVL 0 465 1 23 68 0 0 chr9 102672672 102672716 -39598728 + AT_rich Low_complexity Low_complexity 1 44 0 627 233 81 16 chr9 102673780 102674016 -39597428 + L1ME4a LINE L1 5184 5459 -703 800 141 7 22 chr9 102674016 102674151 -39597293 + FLAM_A SINE Alu 1 133 0 627 233 81 16 chr9 102674151 102674273 -39597171 + L1ME4a LINE L1 5459 5572 -590 1884 128 80 0 chr9 102675405 102675679 -39595765 + AluSx SINE Alu 1 296 -16 861 193 12 6 chr9 102675996 102676157 -39595287 - FRAM SINE Alu -14 162 1 1872 126 63 6 chr9 102676405 102676723 -39594721 + MER44D DNA MER2_type 3 608 -1 472 229 89 32 chr9 102676906 102677063 -39594381 - MIR SINE MIR 0 262 97 249 188 21 0 chr9 102677163 102677211 -39594233 + L2 LINE L2 3265 3313 0 180 0 0 0 chr9 102677769 102677789 -39593655 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1935 140 7 10 chr9 102677793 102678085 -39593359 - AluSx SINE Alu -19 293 3 688 266 120 18 chr9 102678151 102678425 -39593019 - L2 LINE L2 0 3313 3012 1452 100 26 30 chr9 102678630 102678861 -39592583 + MER30 DNA MER1_type 1 230 0 2348 84 3 0 chr9 102679305 102679604 -39591840 - AluSg SINE Alu -10 300 1 2303 68 31 0 chr9 102679745 102680038 -39591406 - AluY SINE Alu -9 302 1 260 324 14 0 chr9 102680121 102680192 -39591252 + MIR SINE MIR 73 144 -118 351 289 55 24 chr9 102680298 102680551 -39590893 + L1ME4a LINE L1 5566 5826 -295 23 0 0 0 chr9 102680682 102680705 -39590739 + AT_rich Low_complexity Low_complexity 1 23 0 537 244 145 6 chr9 102681044 102681199 -39590245 - MIR SINE MIR -50 212 29 2276 108 7 0 chr9 102681199 102681504 -39589940 + AluSx SINE Alu 1 307 -5 537 244 145 6 chr9 102681504 102681520 -39589924 - MIR SINE MIR -233 29 17 484 316 0 13 chr9 102681609 102681761 -39589683 + MIR SINE MIR 9 158 -104 2013 128 87 71 chr9 102682253 102682646 -39588798 + MER65A LTR ERV1 1 403 -42 2474 99 0 0 chr9 102682646 102682958 -39588486 - AluSx SINE Alu 0 312 1 2013 128 87 71 chr9 102682958 102683001 -39588443 + MER65A LTR ERV1 403 444 -1 25 0 0 0 chr9 102683070 102683095 -39588349 + AT_rich Low_complexity Low_complexity 1 25 0 747 294 16 20 chr9 102683325 102683507 -39587937 + MIR SINE MIR 19 201 -61 3813 204 18 8 chr9 102683507 102684233 -39587211 - MER44D DNA MER2_type 0 605 1 747 294 16 20 chr9 102684233 102684295 -39587149 + MIR SINE MIR 201 262 0 25 31 0 0 chr9 102684532 102684564 -39586880 + AT_rich Low_complexity Low_complexity 1 32 0 467 234 36 112 chr9 102685081 102685181 -39586263 - L1ME3A LINE L1 -233 5937 5831 2038 118 0 4 chr9 102685181 102685484 -39585960 - AluSc SINE Alu 0 302 1 467 234 36 112 chr9 102685484 102685660 -39585784 - L1ME3A LINE L1 -339 5831 5681 2046 42 15 4 chr9 102686027 102686286 -39585158 - L1PA7 LINE L1 -2 6152 5891 587 210 25 0 chr9 102686386 102686505 -39584939 + FRAM SINE Alu 43 164 -12 32 67 0 0 chr9 102686888 102686948 -39584496 + AT_rich Low_complexity Low_complexity 1 60 0 243 212 0 30 chr9 102687853 102687961 -39583483 + (CATTT)n Simple_repeat Simple_repeat 1 104 0 24 0 0 0 chr9 102688563 102688587 -39582857 + AT_rich Low_complexity Low_complexity 1 24 0 463 186 0 0 chr9 102689222 102689319 -39582125 - L1MD2 LINE L1 0 6359 6263 207 0 0 0 chr9 102689328 102689351 -39582093 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 516 182 99 0 chr9 102689372 102689493 -39581951 - L1MD2 LINE L1 -84 6275 6143 551 302 80 14 chr9 102689727 102689939 -39581505 + MIR SINE MIR 24 249 -13 439 134 15 0 chr9 102690246 102690313 -39581131 + AluS SINE Alu 1 68 -244 1502 155 12 4 chr9 102690413 102690686 -39580758 + AluSx SINE Alu 32 306 0 198 0 0 0 chr9 102691042 102691064 -39580380 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chr9 102691212 102691235 -39580209 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 102691282 102691310 -39580134 + AT_rich Low_complexity Low_complexity 1 28 0 251 263 263 0 chr9 102691582 102691677 -39579767 + MIR3 SINE MIR 48 167 -41 2234 104 0 10 chr9 102691923 102692231 -39579213 - AluSc SINE Alu -4 305 1 2081 138 40 0 chr9 102692600 102692961 -39578483 + AluSx SINE Alu 1 373 0 2196 97 3 32 chr9 102694525 102694835 -39576609 - AluSx SINE Alu -11 301 1 338 203 108 40 chr9 102695225 102695373 -39576071 + L1MC5 LINE L1 7531 7688 -273 641 229 65 28 chr9 102695374 102695588 -39575856 + LTR50 LTR ERVL 3 224 -571 186 43 0 0 chr9 102695620 102695643 -39575801 + (TAA)n Simple_repeat Simple_repeat 2 24 0 621 101 0 34 chr9 102695643 102695732 -39575712 - FLAM_C SINE Alu -29 114 29 2148 125 0 0 chr9 102696210 102696499 -39574945 + AluSx SINE Alu 11 299 -13 556 222 32 22 chr9 102696585 102696770 -39574674 - L1MC5 LINE L1 -42 7919 7733 204 293 61 30 chr9 102696792 102696881 -39574563 - L3 LINE CR1 -295 1282 1191 258 286 48 12 chr9 102696881 102696965 -39574479 - MER5A DNA MER1_type 0 189 103 * 930 312 225 4 chr9 102696960 102697421 -39574023 + L2 LINE L2 2486 3034 -279 313 21 0 42 chr9 102697528 102697576 -39573868 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 703 206 0 0 chr9 102697937 102698068 -39573376 - FLAM_A SINE Alu -6 136 6 228 357 45 36 chr9 102698947 102699130 -39572314 + MIR SINE MIR 36 212 -50 19091 50 2 1 chr9 102699793 102702985 -39568459 - L1PA5 LINE L1 -1 6153 2960 20212 83 11 8 chr9 102703086 102706006 -39565438 - L1PA5 LINE L1 -3207 2939 11 1955 86 58 41 chr9 102706016 102706308 -39565136 - AluSq SINE Alu -16 297 1 2274 129 0 0 chr9 102706319 102706628 -39564816 - AluSg SINE Alu -1 309 1 2315 106 0 13 chr9 102706635 102706946 -39564498 - AluSg SINE Alu 0 310 4 661 241 38 6 chr9 102707031 102707189 -39564255 - MIR SINE MIR -19 243 81 239 299 38 66 chr9 102707274 102707485 -39563959 - L1ME LINE L1 -389 5732 5528 2214 107 3 10 chr9 102707724 102708023 -39563421 - AluY SINE Alu -12 299 3 1536 269 74 25 chr9 102708112 102709066 -39562378 - L1ME LINE L1 -1875 4271 3251 207 0 0 0 chr9 102709097 102709120 -39562324 + (A)n Simple_repeat Simple_repeat 1 23 0 1811 163 0 14 chr9 102709187 102709508 -39561936 - AluJb SINE Alu 0 317 1 344 197 0 0 chr9 102709578 102709667 -39561777 - L1ME LINE L1 -3219 2927 2839 2061 180 16 60 chr9 102709683 102710199 -39561245 - MLT1D LTR MaLR 0 505 13 955 262 37 37 chr9 102710210 102710584 -39560860 - L1ME LINE L1 -3404 2742 2369 915 234 30 14 chr9 102710589 102710794 -39560650 - L1MC4 LINE L1 -453 7589 7376 2393 97 0 0 chr9 102710794 102711093 -39560351 + AluSq SINE Alu 1 299 -14 915 234 30 14 chr9 102711093 102711182 -39560262 - L1MC4 LINE L1 -666 7376 7290 2035 141 0 7 chr9 102711403 102711701 -39559743 - AluSg SINE Alu -14 296 1 2205 113 0 10 chr9 102712341 102712642 -39558802 + AluSx SINE Alu 1 298 -14 3848 93 18 6 chr9 102712754 102713301 -39558143 - MER41A LTR ERV1 0 554 1 231 36 0 0 chr9 102713566 102713594 -39557850 + (A)n Simple_repeat Simple_repeat 1 28 0 391 276 76 34 chr9 102714378 102714558 -39556886 + L1MC5 LINE L1 7558 7729 -232 3437 109 41 2 chr9 102714558 102715091 -39556353 - MER41C LTR ERV1 0 554 1 391 276 76 34 chr9 102715091 102715265 -39556179 + L1MC5 LINE L1 7729 7927 -34 345 260 96 0 chr9 102715291 102715395 -39556049 - MIR3 SINE MIR -13 195 82 566 341 17 0 chr9 102715678 102715854 -39555590 + MIR3 SINE MIR 30 208 0 378 315 68 6 chr9 102716444 102716606 -39554838 - MIR SINE MIR 0 262 91 1002 167 6 19 chr9 102716875 102717009 -39554435 + AluJo SINE Alu 1 134 -178 2529 77 0 10 chr9 102717009 102717319 -39554125 + AluSq SINE Alu 1 307 -6 1002 167 6 19 chr9 102717319 102717346 -39554098 + AluJo SINE Alu 134 160 -152 1027 276 89 42 chr9 102717603 102718201 -39553243 - L1MC4a LINE L1 -1878 5930 5305 2170 118 3 0 chr9 102718251 102718547 -39552897 - AluSx SINE Alu -15 297 1 256 285 44 38 chr9 102718618 102718776 -39552668 - L1P LINE L1 -1099 5047 4889 2458 93 3 0 chr9 102719907 102720217 -39551227 - AluSx SINE Alu -1 311 1 235 317 33 58 chr9 102720259 102720379 -39551065 - L2 LINE L2 -4 3309 3193 2222 114 0 0 chr9 102720455 102720754 -39550690 + AluSx SINE Alu 1 299 -13 2072 134 7 0 chr9 102720892 102721184 -39550260 - AluSx SINE Alu -18 294 1 295 317 123 36 chr9 102722338 102722647 -39548797 + L2 LINE L2 1977 2312 -1002 2068 128 21 0 chr9 102722894 102723184 -39548260 - AluSx SINE Alu -16 296 1 353 340 203 7 chr9 102723408 102723679 -39547765 - L3 LINE CR1 -40 1537 1214 252 196 18 36 chr9 102723806 102723862 -39547582 + MIR SINE MIR 97 151 -57 323 140 0 0 chr9 102724029 102724079 -39547365 + MIR3 SINE MIR 151 200 -8 272 352 21 41 chr9 102724239 102724343 -39547101 + L3 LINE CR1 1417 1519 -58 1620 137 27 38 chr9 102724343 102724636 -39546808 + AluJo SINE Alu 19 308 -4 272 352 21 41 chr9 102724636 102724676 -39546768 + L3 LINE CR1 1519 1558 -19 * 390 350 92 37 chr9 102724665 102724991 -39546453 + L2 LINE L2 2925 3268 -4 424 290 10 0 chr9 102725011 102725111 -39546333 + MIR3 SINE MIR 89 189 -19 336 301 58 0 chr9 102725601 102725704 -39545740 - MIR SINE MIR -107 155 47 300 273 50 0 chr9 102726567 102726666 -39544778 - L3 LINE CR1 -289 1288 1185 607 147 0 20 chr9 102727262 102727504 -39543940 + AluJo SINE Alu 1 305 -7 473 293 79 0 chr9 102727641 102727805 -39543639 + MIR3 SINE MIR 32 208 0 360 242 50 10 chr9 102729313 102729412 -39542032 + MER5A DNA MER1_type 4 106 -83 1466 159 63 50 chr9 102729483 102729784 -39541660 + AluJo SINE Alu 1 305 -7 347 222 111 22 chr9 102730137 102730227 -39541217 + MIR3 SINE MIR 59 156 -52 610 191 48 21 chr9 102730830 102731018 -39540426 - L1MDa LINE L1 -3965 2575 2383 2125 184 44 21 chr9 102731098 102731621 -39539823 - L1MDa LINE L1 -4366 2174 1640 2126 212 19 19 chr9 102731649 102732125 -39539319 - MER68 LTR ERV1 -11 551 76 587 176 0 34 chr9 102732094 102732213 -39539231 - Charlie1a DNA MER1_type -1306 149 35 * 278 371 69 0 chr9 102732232 102732391 -39539053 + MIR SINE MIR 90 259 -3 1781 158 55 0 chr9 102732450 102732723 -39538721 + AluSx SINE Alu 1 288 -24 180 283 0 0 chr9 102732898 102732944 -39538500 + L2 LINE L2 2914 2959 -313 1272 151 108 15 chr9 102733144 102733403 -39538041 + MSTA LTR MaLR 146 428 0 1769 178 0 23 chr9 102734190 102734493 -39536951 - AluJb SINE Alu -16 296 1 271 313 34 42 chr9 102734630 102734892 -39536552 - MLT1F1-int LTR MaLR -832 539 280 375 232 105 30 chr9 102734989 102735312 -39536132 - MLT1F1 LTR MaLR 0 588 158 2209 83 39 3 chr9 102735318 102735655 -39535789 - L1MC/D LINE L1 -562 5771 5423 706 186 29 54 chr9 102735687 102735891 -39535553 - L1MC4a LINE L1 -1651 6157 5959 2329 97 0 7 chr9 102736007 102736307 -39535137 - AluSp SINE Alu -15 298 1 1375 179 67 28 chr9 102736370 102736655 -39534789 - AluJb SINE Alu -6 296 1 2225 91 14 0 chr9 102736727 102737014 -39534430 - AluSg SINE Alu -18 292 2 1750 271 114 42 chr9 102737107 102737841 -39533603 - L1MEd LINE L1 -5329 790 4 361 276 37 44 chr9 102738936 102739118 -39532326 + MIR SINE MIR 20 202 -60 1175 195 143 41 chr9 102789467 102789584 -39481860 - LTR50 LTR ERVL -124 671 567 1608 90 0 0 chr9 102789584 102789785 -39481659 + AluY SINE Alu 105 305 -6 1175 195 143 41 chr9 102789785 102790198 -39481246 - LTR50 LTR ERVL -228 567 1 568 313 60 36 chr9 102790442 102791142 -39480302 + L1MC4a LINE L1 5255 5971 -1837 2236 109 0 0 chr9 102791276 102791585 -39479859 + AluSx SINE Alu 1 309 0 385 186 115 0 chr9 102791650 102791763 -39479681 - L1MD3 LINE L1 0 7995 7870 2022 148 102 5 chr9 102791763 102792147 -39479297 - MER61C LTR ERV1 0 434 14 280 208 0 0 chr9 102792123 102792176 -39479268 - LTR28 LTR ERV1 -967 53 1 * 397 198 12 0 chr9 102792176 102792262 -39479182 - L1MD3 LINE L1 -122 7873 7787 2117 138 3 6 chr9 102792283 102792594 -39478850 - AluSx SINE Alu -2 310 1 1781 138 75 36 chr9 102793142 102793503 -39477941 + THE1C LTR MaLR 1 375 0 561 258 60 60 chr9 102793977 102794284 -39477160 + L1ME4a LINE L1 5497 5806 -315 1685 166 14 24 chr9 102794284 102794579 -39476865 - AluJb SINE Alu -20 292 1 561 258 60 60 chr9 102794579 102794636 -39476808 + L1ME4a LINE L1 5805 5861 -260 1423 208 28 62 chr9 102794640 102795169 -39476275 + L1MC5 LINE L1 7091 7601 -360 1662 185 102 57 chr9 102795169 102795193 -39476251 - MER31A LTR ERV1 -3 482 461 2177 120 0 0 chr9 102795193 102795485 -39475959 - AluY SINE Alu -19 292 1 1662 185 102 57 chr9 102795485 102795920 -39475524 - MER31A LTR ERV1 -24 461 2 669 197 98 63 chr9 102795920 102796124 -39475320 + L1MC5 LINE L1 7594 7789 -172 1640 183 58 25 chr9 102796124 102796307 -39475137 - MLT1A2 LTR MaLR -2 372 197 270 0 0 0 chr9 102796307 102796337 -39475107 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 276 30 0 0 chr9 102796336 102796369 -39475075 + (GA)n Simple_repeat Simple_repeat 2 34 0 1640 183 58 25 chr9 102796337 102796545 -39474899 - MLT1A2 LTR MaLR -177 197 1 669 197 98 63 chr9 102796545 102796655 -39474789 + L1MC5 LINE L1 7789 7919 -42 288 70 0 23 chr9 102796726 102796769 -39474675 - Alu SINE Alu -9 291 250 310 62 0 0 chr9 102796872 102796920 -39474524 + Alu SINE Alu 254 301 0 708 218 127 50 chr9 102797189 102797682 -39473762 - MER34B LTR ERV1 0 565 2 387 103 29 57 chr9 102797861 102798036 -39473408 + (TA)n Simple_repeat Simple_repeat 2 171 0 2213 101 3 7 chr9 102798056 102798353 -39473091 + AluSp SINE Alu 1 296 -17 297 204 24 54 chr9 102798366 102798533 -39472911 + (TA)n Simple_repeat Simple_repeat 2 163 0 2241 139 45 21 chr9 102798715 102798863 -39472581 + MSTC LTR MaLR 1 144 -284 4283 114 51 28 chr9 102798863 102799574 -39471870 + LTR8A LTR ERV1 1 727 0 2241 139 45 21 chr9 102799574 102799843 -39471601 + MSTC LTR MaLR 144 428 0 1870 97 7 0 chr9 102800274 102800553 -39470891 + MER41A LTR ERV1 274 554 0 496 338 6 6 chr9 102800562 102800722 -39470722 + MIR SINE MIR 33 192 -70 1573 208 32 41 chr9 102800771 102801238 -39470206 + L1ME2 LINE L1 5489 5951 -213 2304 97 0 3 chr9 102801238 102801538 -39469906 - AluSx SINE Alu -13 299 1 459 277 70 29 chr9 102801572 102801777 -39469667 - MIR SINE MIR -14 248 32 547 165 0 0 chr9 102801892 102801995 -39469449 + MLT1D LTR MaLR 403 505 0 2135 118 7 0 chr9 102802539 102802835 -39468609 - AluSx SINE Alu -14 298 1 248 352 11 0 chr9 102802852 102802940 -39468504 - L2 LINE L2 -784 2530 2442 287 289 134 31 chr9 102802944 102803041 -39468403 + L2 LINE L2 3155 3261 -11 857 239 72 91 chr9 102803148 102803567 -39467877 + MLT1J2 LTR MaLR 3 413 -37 2206 112 7 3 chr9 102803674 102803968 -39467476 + AluSx SINE Alu 1 295 -17 348 326 106 47 chr9 102804108 102804430 -39467014 + L2 LINE L2 1842 2182 -1132 1357 152 41 0 chr9 102804886 102805155 -39466289 + MER65C LTR ERV1 182 461 0 243 86 0 0 chr9 102805155 102805190 -39466254 - Tigger5 DNA MER2_type -211 2112 2078 * 919 153 0 0 chr9 102805183 102805333 -39466111 + Tigger5 DNA MER2_type 2174 2323 0 1845 153 3 17 chr9 102805985 102806273 -39465171 - AluJb SINE Alu -28 284 1 610 150 33 0 chr9 102806380 102806500 -39464944 - L1MA9 LINE L1 -39 6273 6150 486 282 48 33 chr9 102806870 102807207 -39464237 + L1MEc LINE L1 1315 1656 -4740 2532 162 44 53 chr9 102807314 102807420 -39464024 - Charlie1a DNA MER1_type -2084 677 572 2081 150 0 0 chr9 102807420 102807727 -39463717 - AluSx SINE Alu -5 307 1 2532 162 44 53 chr9 102807727 102807970 -39463474 - Charlie1a DNA MER1_type -2189 572 332 2040 107 17 3 chr9 102807970 102808261 -39463183 - AluY SINE Alu -14 297 3 2532 162 44 53 chr9 102808261 102808496 -39462948 - Charlie1a DNA MER1_type -2429 332 97 616 99 45 18 chr9 102808510 102808621 -39462823 + L1MB4 LINE L1 6066 6179 -1 1706 106 9 4 chr9 102808703 102808964 -39462480 + AluSq SINE Alu 56 317 0 3447 132 15 6 chr9 102809015 102809536 -39461908 + MER1A DNA MER1_type 2 527 0 390 288 56 32 chr9 102809937 102810062 -39461382 + L2 LINE L2 3139 3266 -6 1426 233 219 24 chr9 102810752 102811371 -39460073 + LTR50 LTR ERVL 3 759 -36 2152 110 7 14 chr9 102811371 102811662 -39459782 + AluSg SINE Alu 1 289 -21 1426 233 219 24 chr9 102811662 102811700 -39459744 + LTR50 LTR ERVL 759 788 -7 2077 145 26 0 chr9 102811734 102812037 -39459407 + AluSx SINE Alu 1 311 -1 437 125 27 9 chr9 102812038 102812150 -39459294 + (TA)n Simple_repeat Simple_repeat 1 114 0 213 271 51 0 chr9 102812639 102812698 -39458746 + MIR3 SINE MIR 122 183 -25 22 35 0 0 chr9 102813252 102813281 -39458163 + AT_rich Low_complexity Low_complexity 1 29 0 366 211 14 0 chr9 102813639 102813710 -39457734 + MER81 DNA DNA 2 73 -41 2155 120 3 0 chr9 102813737 102814029 -39457415 - AluSx SINE Alu -19 293 1 246 309 52 10 chr9 102814035 102814132 -39457312 + L2 LINE L2 2055 2155 -1159 1130 203 119 175 chr9 102814133 102815185 -39456259 + L2 LINE L2 2265 3261 -52 832 158 0 26 chr9 102815186 102815338 -39456106 + MER3 DNA MER1_type 2 149 -60 2245 83 40 7 chr9 102815629 102815930 -39455514 + AluY SINE Alu 1 311 0 195 129 0 0 chr9 102816100 102816131 -39455313 + (A)n Simple_repeat Simple_repeat 1 31 0 328 208 14 0 chr9 102816133 102816205 -39455239 + L1MB7 LINE L1 4868 4940 -1206 490 211 11 0 chr9 102816627 102816722 -39454722 + AluJ/FLAM SINE Alu 1 96 -216 27 0 0 0 chr9 102816825 102816852 -39454592 + AT_rich Low_complexity Low_complexity 1 27 0 2295 101 3 3 chr9 102817327 102817633 -39453811 + AluSq SINE Alu 1 306 -7 23 0 0 0 chr9 102818668 102818691 -39452753 + AT_rich Low_complexity Low_complexity 1 23 0 2224 183 23 33 chr9 102820727 102821246 -39450198 + L1MB7 LINE L1 5662 6175 -9 1447 190 21 7 chr9 102821435 102821755 -39449689 + AluJb SINE Alu 1 324 0 229 254 218 3 chr9 102823662 102823810 -39447634 + MIR SINE MIR 16 234 -28 183 42 0 0 chr9 102824169 102824193 -39447251 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 214 145 14 145 chr9 102826649 102826718 -39444726 - L2 LINE L2 -1069 2245 2186 2281 248 47 42 chr9 102826730 102827269 -39444175 + L2 LINE L2 2243 2778 -535 2172 141 62 48 chr9 102827269 102827687 -39443757 - MSTA LTR MaLR -4 424 1 2281 248 47 42 chr9 102827687 102828013 -39443431 + L2 LINE L2 2778 3116 -197 1635 27 0 0 chr9 102828013 102828201 -39443243 + L1PA3 LINE L1 5965 6152 -3 2281 248 47 42 chr9 102828201 102828398 -39443046 + L2 LINE L2 3116 3310 -3 604 230 115 61 chr9 102828495 102828632 -39442812 - Charlie8 DNA MER1_type -55 275 147 1592 207 47 23 chr9 102828632 102829019 -39442425 - MSTD LTR MaLR 0 396 1 604 230 115 61 chr9 102829019 102829142 -39442302 - Charlie8 DNA MER1_type -183 147 1 1820 164 137 12 chr9 102829388 102829797 -39441647 - MLT1C LTR MaLR -4 463 4 326 217 47 19 chr9 102830326 102830432 -39441012 - LTR67 LTR ERVL -4 553 445 269 228 66 0 chr9 102830517 102830642 -39440802 + L1P LINE L1 4166 4298 -1848 528 199 153 6 chr9 102830656 102830832 -39440612 + MER57A LTR ERV1 197 398 -5 804 209 30 60 chr9 102830935 102831203 -39440241 + LOR1-int LTR ERV1 3081 3340 -2991 439 226 47 0 chr9 102831253 102831359 -39440085 + LOR1-int LTR ERV1 3349 3459 -2872 365 193 123 18 chr9 102831645 102831759 -39439685 + LOR1-int LTR ERV1 1551 1676 -6444 4568 138 50 1 chr9 102831759 102832542 -39438902 + L1PA15 LINE L1 5344 6164 -1 2055 171 0 0 chr9 102832607 102832916 -39438528 + AluJb SINE Alu 1 309 -3 651 73 10 10 chr9 102832963 102833059 -39438385 + L1PB3 LINE L1 6054 6149 -5 260 211 14 0 chr9 102833067 102833138 -39438306 + LOR1-int LTR ERV1 1720 1791 -6329 6326 164 25 62 chr9 102833199 102833529 -39437915 + LOR1-int LTR ERV1 4296 4637 -2900 2399 81 7 3 chr9 102833529 102833839 -39437605 + AluY SINE Alu 1 311 0 6326 164 25 62 chr9 102833839 102834856 -39436588 + LOR1-int LTR ERV1 4637 5577 -1960 2321 107 3 0 chr9 102834856 102835165 -39436279 + AluSg SINE Alu 1 310 0 6326 164 25 62 chr9 102835165 102835404 -39436040 + LOR1-int LTR ERV1 5577 5823 -1714 2173 180 24 19 chr9 102835737 102836154 -39435290 + MSTB LTR MaLR 8 426 0 2168 166 74 17 chr9 102836167 102836570 -39434874 + MSTB LTR MaLR 1 426 0 1429 169 0 8 chr9 102836570 102836824 -39434620 + LOR1-int LTR ERV1 5828 6079 -1458 1608 183 82 5 chr9 102836826 102837271 -39434173 - LTR22 LTR ERVK -2 507 8 1907 141 0 2 chr9 102837275 102837691 -39433753 - HERVK22 LTR ERVK 0 6837 3170 * 17247 83 13 3 chr9 102837671 102839805 -39431639 - HERVK22 LTR ERVK -1769 5068 2911 2534 67 0 0 chr9 102839805 102840102 -39431342 + AluY SINE Alu 1 297 -14 17247 83 13 3 chr9 102840102 102840697 -39430747 - HERVK22 LTR ERVK -3926 2911 2323 6428 101 34 1 chr9 102840688 102841564 -39429880 - HERVK22 LTR ERVK -5932 905 1 * 2159 169 136 4 chr9 102841564 102842014 -39429430 - LTR22 LTR ERVK 0 509 1 2410 191 14 64 chr9 102842014 102842168 -39429276 + LOR1-int LTR ERV1 6074 6234 -1303 1527 171 0 90 chr9 102842168 102842489 -39428955 + AluJo SINE Alu 1 292 -20 2410 191 14 64 chr9 102842489 102842893 -39428551 + LOR1-int LTR ERV1 6234 6604 -933 1043 172 77 29 chr9 102842880 102842923 -39428521 + LOR1-int LTR ERV1 6926 6965 -572 * 2118 151 37 0 chr9 102842923 102843274 -39428170 - THE1B LTR MaLR 0 364 1 1043 172 77 29 chr9 102843274 102843439 -39428005 + LOR1-int LTR ERV1 6965 7144 -393 662 146 23 31 chr9 102843441 102843571 -39427873 + LTR54B LTR ERV1 3 131 -367 297 182 18 0 chr9 102843572 102843627 -39427817 + LOR1-int LTR ERV1 7280 7335 -202 226 107 0 107 chr9 102843627 102843671 -39427773 + LTR54B LTR ERV1 234 272 -226 2156 139 0 0 chr9 102843671 102843966 -39427478 + AluSx SINE Alu 1 295 -17 226 107 0 107 chr9 102843966 102843977 -39427467 + LTR54B LTR ERV1 272 283 -215 856 166 7 13 chr9 102843977 102844128 -39427316 + MER57A-int LTR ERV1 7381 7530 -7 2110 156 30 62 chr9 102844155 102844559 -39426885 + MER57A LTR ERV1 1 391 -12 787 231 86 14 chr9 102844563 102844802 -39426642 + L1ME LINE L1 5339 5594 -576 665 286 77 17 chr9 102844836 102845070 -39426374 - MLT1J LTR MaLR -77 434 187 2398 86 0 0 chr9 102845170 102845462 -39425982 - AluSx SINE Alu -20 292 1 846 204 128 20 chr9 102845590 102845786 -39425658 - MSTD LTR MaLR 0 396 180 528 156 170 14 chr9 102846040 102846181 -39425263 - LTR50 LTR ERVL -1 794 632 7576 63 13 210 chr9 102846285 102847926 -39423518 + SVA Other Other 66 1383 -3 615 295 76 18 chr9 102848293 102848517 -39422927 - MIR SINE MIR -1 261 25 324 179 0 0 chr9 102848762 102848818 -39422626 - MER117 DNA MER1_type -76 121 66 789 253 77 32 chr9 102849020 102849305 -39422139 - LTR16A1 LTR ERVL -4 453 156 3606 132 8 58 chr9 102849353 102849997 -39421447 - LTR9 LTR ERV1 0 612 1 341 236 64 55 chr9 102850199 102850309 -39421135 - MLT1J2 LTR MaLR -211 239 129 1179 163 25 0 chr9 102850337 102850539 -39420905 + MER2 DNA MER2_type 4 210 -135 32 0 0 0 chr9 102850567 102850599 -39420845 + AT_rich Low_complexity Low_complexity 1 32 0 480 35 0 0 chr9 102850650 102850708 -39420736 + (TA)n Simple_repeat Simple_repeat 2 59 0 1876 61 0 4 chr9 102850708 102850977 -39420467 + AluY SINE Alu 60 329 0 221 343 29 9 chr9 102851126 102851231 -39420213 + L2 LINE L2 2943 3049 -223 2345 101 0 3 chr9 102851289 102851597 -39419847 - AluSx SINE Alu -1 311 5 619 332 16 0 chr9 102851896 102852089 -39419355 - LTR16B LTR ERVL -245 219 24 207 0 0 0 chr9 102852425 102852448 -39418996 + (CA)n Simple_repeat Simple_repeat 2 24 0 473 278 35 92 chr9 102852523 102852596 -39418848 + L1MC4a LINE L1 5397 5473 -648 1934 141 35 0 chr9 102852596 102852886 -39418558 - AluJb SINE Alu -7 305 6 473 278 35 92 chr9 102852886 102853182 -39418262 + L1MC4a LINE L1 5473 5745 -376 243 279 29 41 chr9 102853257 102853429 -39418015 + L1MC4a LINE L1 5753 5922 -1886 21 36 0 0 chr9 102853608 102853636 -39417808 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr9 102853695 102853722 -39417722 + AT_rich Low_complexity Low_complexity 1 27 0 304 59 39 0 chr9 102854186 102854237 -39417207 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 252 28 56 0 chr9 102854237 102854273 -39417171 - L1MB7 LINE L1 -1 6183 6146 234 109 0 87 chr9 102854244 102854290 -39417154 - L1MB8 LINE L1 -6 6172 6131 * 1933 158 10 0 chr9 102854479 102854771 -39416673 - AluJb SINE Alu -11 301 7 807 199 13 6 chr9 102855034 102855190 -39416254 - FRAM SINE Alu -19 157 1 239 213 75 25 chr9 102855316 102855396 -39416048 + LTR65 LTR ERV1 532 615 -54 311 281 53 9 chr9 102855785 102855899 -39415545 - L2 LINE L2 -25 3288 3170 631 197 0 15 chr9 102856406 102856543 -39414901 + L1MB8 LINE L1 6042 6176 -2 2425 118 57 45 chr9 102856765 102857188 -39414256 + MSTA LTR MaLR 1 428 0 1841 155 28 63 chr9 102857213 102857412 -39414032 + HsTC2 DNA Tc2 1282 1486 -412 1941 150 7 3 chr9 102857412 102857712 -39413732 - AluJb SINE Alu -11 301 1 1841 155 28 63 chr9 102857712 102857971 -39413473 + HsTC2 DNA Tc2 1486 1900 2 816 161 0 0 chr9 102858007 102858125 -39413319 - FLAM_C SINE Alu -25 118 1 260 329 121 18 chr9 102858150 102858430 -39413014 - L1MC/D LINE L1 -2089 5719 5411 2252 118 0 7 chr9 102858792 102859098 -39412346 - AluSx SINE Alu -8 304 1 1895 144 0 0 chr9 102859191 102859461 -39411983 - AluJb SINE Alu -36 276 7 1173 188 161 54 chr9 102859503 102859901 -39411543 + L1ME2 LINE L1 5119 5583 -581 2509 60 3 0 chr9 102859901 102860203 -39411241 - AluY SINE Alu -8 303 1 1173 188 161 54 chr9 102860203 102860274 -39411170 + L1ME2 LINE L1 5583 5645 -519 977 76 83 0 chr9 102860277 102860421 -39411023 + MER30 DNA MER1_type 1 156 -74 888 196 12 0 chr9 102860423 102860596 -39410848 + L1ME2 LINE L1 5668 5842 -322 1142 203 19 27 chr9 102860598 102860859 -39410585 + L1ME2 LINE L1 5895 6153 -11 2780 109 40 5 chr9 102860970 102861336 -39410108 + MER83 LTR ERV1 1 385 -63 2080 140 3 10 chr9 102861336 102861650 -39409794 - AluSx SINE Alu 0 312 1 2780 109 40 5 chr9 102861650 102861704 -39409740 + MER83 LTR ERV1 385 436 -12 301 196 0 152 chr9 102862015 102862127 -39409317 + MIR3 SINE MIR 72 166 -42 24 67 0 0 chr9 102862407 102862452 -39408992 + AT_rich Low_complexity Low_complexity 1 45 0 586 273 66 5 chr9 102862770 102862968 -39408476 - LTR33 LTR ERVL -5 516 307 322 286 9 9 chr9 102863102 102863207 -39408237 - LTR33 LTR ERVL -402 119 15 407 331 111 30 chr9 102863276 102863871 -39407573 - L2 LINE L2 -254 3059 2422 2390 88 23 7 chr9 102863871 102864178 -39407266 + AluSx SINE Alu 1 312 0 2359 81 3 10 chr9 102864249 102864556 -39406888 - AluY SINE Alu -6 305 1 200 204 0 23 chr9 102864879 102864923 -39406521 + CT-rich Low_complexity Low_complexity 6 48 0 438 307 70 22 chr9 102866099 102866327 -39405117 + MIR SINE MIR 12 250 -12 699 132 35 0 chr9 102866352 102866466 -39404978 + AluJb SINE Alu 183 300 -12 2079 156 50 31 chr9 102866466 102866876 -39404568 + L1MB4 LINE L1 5716 6137 -43 2371 70 17 0 chr9 102866876 102867174 -39404270 + AluSg SINE Alu 1 303 -7 2079 156 50 31 chr9 102867174 102867219 -39404225 + L1MB4 LINE L1 6137 6180 0 358 266 7 77 chr9 102867229 102867372 -39404072 - MLT1J LTR MaLR -92 419 287 2394 96 0 6 chr9 102867676 102867989 -39403455 + AluSx SINE Alu 1 311 -1 467 189 117 18 chr9 102868165 102868276 -39403168 + HsTC2 DNA Tc2 15 136 -1762 250 139 0 0 chr9 102868283 102868319 -39403125 + HsTC2 DNA Tc2 1283 1318 -580 894 236 75 10 chr9 102868320 102868612 -39402832 + HsTC2 DNA Tc2 1588 1898 0 2598 44 0 0 chr9 102868614 102868912 -39402532 - AluY SINE Alu -13 298 1 3347 144 109 126 chr9 102869246 102869836 -39401608 - L1MC3 LINE L1 0 7785 7186 329 270 22 0 chr9 102869836 102869925 -39401519 - MLT1F1 LTR MaLR -442 125 35 3347 144 109 126 chr9 102869925 102870080 -39401364 - L1MC3 LINE L1 -599 7186 7030 2189 117 7 0 chr9 102870080 102870378 -39401066 + AluSq SINE Alu 1 300 -13 3347 144 109 126 chr9 102870378 102870480 -39400964 - L1MC3 LINE L1 -755 7030 6865 737 203 0 14 chr9 102870592 102870740 -39400704 - L1MC3 LINE L1 -935 6850 6705 716 183 44 0 chr9 102870821 102870958 -39400486 - MER6 DNA MER2_type 0 865 2 245 333 100 3 chr9 102871024 102871384 -39400060 - L1M4 LINE L1 -1127 5019 4625 1227 156 67 118 chr9 102871668 102871982 -39399462 + AluJo SINE Alu 5 302 -10 247 227 15 0 chr9 102872128 102872194 -39399250 - L1MC3 LINE L1 -2019 5789 5723 287 164 16 0 chr9 102872194 102872255 -39399189 + CT-rich Low_complexity Low_complexity 2 63 0 977 234 191 48 chr9 102872569 102873051 -39398393 - MLT2F LTR ERVL -105 558 8 1163 240 32 18 chr9 102873279 102873558 -39397886 + MLT1F LTR MaLR 260 542 0 2414 100 3 0 chr9 102873619 102873928 -39397516 + AluSg SINE Alu 1 310 0 2598 58 0 0 chr9 102874634 102874943 -39396501 + AluY SINE Alu 3 311 0 254 154 19 0 chr9 102875007 102875059 -39396385 - MIR SINE MIR -56 206 154 2184 130 0 0 chr9 102875080 102875379 -39396065 - AluSx SINE Alu -12 300 2 2231 109 0 0 chr9 102875958 102876252 -39395192 + AluSx SINE Alu 1 294 -18 1489 181 98 4 chr9 102876343 102876620 -39394824 - AluJb SINE Alu -9 303 1 235 209 60 0 chr9 102876687 102876754 -39394690 + MLT1K LTR MaLR 510 580 -8 2404 87 3 3 chr9 102876955 102877264 -39394180 + AluSg SINE Alu 2 310 0 1808 173 3 22 chr9 102877283 102877601 -39393843 + AluJo SINE Alu 1 312 0 219 69 0 0 chr9 102877958 102877987 -39393457 + (A)n Simple_repeat Simple_repeat 1 29 0 240 188 0 31 chr9 102878198 102878262 -39393182 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 983 115 0 0 chr9 102878280 102878410 -39393034 - AluJo SINE Alu -171 141 12 2584 40 0 16 chr9 102878528 102878831 -39392613 + AluY SINE Alu 1 298 -13 2109 100 54 0 chr9 102879192 102879471 -39391973 + AluSx SINE Alu 19 312 0 3486 157 66 16 chr9 102879666 102880336 -39391108 + L1MB5 LINE L1 5472 6174 0 22 35 0 0 chr9 102880869 102880898 -39390546 + GC_rich Low_complexity Low_complexity 1 29 0 293 252 47 19 chr9 102881625 102881732 -39389712 - MIR SINE MIR -1 261 152 235 243 0 43 chr9 102882863 102882933 -39388511 + MIR SINE MIR 20 86 -176 430 323 31 0 chr9 102883022 102883152 -39388292 - L2 LINE L2 -3 3269 3136 2283 115 0 10 chr9 102883305 102883619 -39387825 - AluSx SINE Alu -1 311 1 348 63 5 0 chr9 102883882 102883933 -39387511 + Alu SINE Alu 1 45 -257 2479 90 3 0 chr9 102884606 102884918 -39386526 - AluSp SINE Alu 0 313 1 1647 172 24 20 chr9 102884918 102885215 -39386229 - AluJo SINE Alu -11 301 4 261 222 125 0 chr9 102886199 102886271 -39385173 - L2 LINE L2 -8 3305 3225 299 291 112 37 chr9 102886731 102886865 -39384579 + MIR3 SINE MIR 13 156 -52 22 0 0 0 chr9 102886875 102886897 -39384547 + AT_rich Low_complexity Low_complexity 1 22 0 221 250 125 0 chr9 102886925 102886989 -39384455 - MIR SINE MIR -188 74 3 1507 181 10 27 chr9 102886992 102887291 -39384153 - AluJo SINE Alu -18 294 1 2005 132 7 26 chr9 102887858 102888162 -39383282 + AluSx SINE Alu 1 298 -14 220 269 0 45 chr9 102888466 102888533 -39382911 + L2 LINE L2 3242 3305 -8 287 104 21 0 chr9 102888574 102888622 -39382822 + (CA)n Simple_repeat Simple_repeat 2 50 0 366 254 91 9 chr9 102888769 102888879 -39382565 - MIR SINE MIR -114 148 30 1238 219 31 99 chr9 102889105 102889521 -39381923 - MLT1B LTR MaLR 0 390 3 970 191 12 0 chr9 102889758 102889926 -39381518 - FAM SINE Alu -5 170 1 190 245 0 0 chr9 102890009 102890058 -39381386 - L2 LINE L2 -7 3265 3217 2269 104 0 0 chr9 102890433 102890720 -39380724 - AluSx SINE Alu -25 287 1 257 194 167 0 chr9 102891036 102891108 -39380336 + MIR SINE MIR 70 153 -109 222 128 0 0 chr9 102891398 102891437 -39380007 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 299 285 99 12 chr9 102891871 102892043 -39379401 + L1ME LINE L1 5508 5694 -427 2299 82 0 38 chr9 102893117 102893433 -39378011 - AluY SINE Alu -7 304 1 214 248 4 76 chr9 102893887 102893992 -39377452 + MIR SINE MIR 39 140 -68 233 189 19 0 chr9 102894106 102894159 -39377285 - MIR3 SINE MIR -36 172 119 1294 174 24 105 chr9 102894205 102894539 -39376905 - AluYb8 SINE Alu -11 307 1 2152 80 0 0 chr9 102894546 102894809 -39376635 - AluSg SINE Alu -8 302 40 2341 81 0 17 chr9 102894966 102895264 -39376180 + AluSq SINE Alu 1 293 -20 2184 110 0 7 chr9 102896143 102896444 -39375000 + AluJo SINE Alu 5 303 -9 2367 94 3 0 chr9 102896732 102897031 -39374413 + AluSp SINE Alu 1 300 -13 1358 181 55 7 chr9 102898942 102899251 -39372193 + MER33 DNA MER1_type 1 324 0 233 350 40 10 chr9 102899362 102899462 -39371982 - L3 LINE CR1 -381 1196 1094 2177 121 0 3 chr9 102900158 102900455 -39370989 + AluSx SINE Alu 1 296 -16 388 234 307 5 chr9 102901246 102901438 -39370006 + MIR SINE MIR 12 261 -1 1986 158 6 3 chr9 102901524 102901835 -39369609 + AluSx SINE Alu 1 312 0 187 339 107 30 chr9 102902184 102902352 -39369092 - L2 LINE L2 -4 3268 3088 182 318 0 0 chr9 102902934 102902978 -39368466 - L2 LINE L2 -5 3267 3224 682 244 73 77 chr9 102904892 102905370 -39366074 - MARNA DNA Mariner -14 572 10 348 349 34 0 chr9 102905823 102905972 -39365472 + MIR3 SINE MIR 30 183 -25 2456 61 3 3 chr9 102906000 102906297 -39365147 - AluY SINE Alu -14 297 1 320 250 0 0 chr9 102906833 102906909 -39364535 - MER5A DNA MER1_type -101 88 13 467 301 34 23 chr9 102907183 102907359 -39364085 - MER5B DNA MER1_type 0 178 1 213 317 53 11 chr9 102907419 102907531 -39363913 - MIR SINE MIR -78 130 14 2253 88 0 3 chr9 102908212 102908521 -39362923 + AluSq SINE Alu 1 308 0 299 219 124 9 chr9 102909854 102909959 -39361485 + MIR SINE MIR 96 212 -50 452 85 0 0 chr9 102910713 102910772 -39360672 + Alu SINE Alu 2 60 -258 1999 84 0 60 chr9 102910772 102911057 -39360387 + AluSg SINE Alu 24 291 -19 398 212 102 0 chr9 102911752 102911870 -39359574 + MIR SINE MIR 133 262 0 313 289 0 0 chr9 102911878 102911954 -39359490 - MIR SINE MIR -169 93 18 1704 132 43 0 chr9 102911967 102912224 -39359220 + AluSx SINE Alu 1 268 -44 642 97 0 0 chr9 102912224 102912317 -39359127 + AluSg/x SINE Alu 217 309 -1 798 165 0 23 chr9 102912328 102912461 -39358983 + FLAM_C SINE Alu 3 132 -1 295 296 0 0 chr9 102912985 102913066 -39358378 + MIR3 SINE MIR 93 173 -35 349 255 69 93 chr9 102913566 102913727 -39357717 - MIR SINE MIR -9 253 97 968 55 31 0 chr9 102913727 102913854 -39357590 + L1MB4 LINE L1 6050 6180 0 349 255 69 93 chr9 102913854 102913908 -39357536 - MIR SINE MIR -165 97 43 448 243 194 7 chr9 102914152 102914296 -39357148 - MER5A DNA MER1_type -1 188 18 446 298 44 11 chr9 102914340 102914521 -39356923 + MER5A DNA MER1_type 3 189 0 25 0 0 0 chr9 102914976 102915001 -39356443 + AT_rich Low_complexity Low_complexity 1 25 0 1354 267 90 25 chr9 102915038 102915596 -39355848 - L1MC4 LINE L1 -140 7902 7309 2413 70 0 0 chr9 102915680 102915984 -39355460 - AluSx SINE Alu 0 304 1 505 236 64 6 chr9 102915984 102916141 -39355303 - L1MC4 LINE L1 -713 7329 7164 1430 320 121 31 chr9 102916458 102916650 -39354794 + L2 LINE L2 1404 1577 -1737 2149 106 4 0 chr9 102916650 102916925 -39354519 + AluSg SINE Alu 14 289 -21 1430 320 121 31 chr9 102916925 102917125 -39354319 + L2 LINE L2 1577 1758 -1556 2409 97 0 0 chr9 102917125 102917423 -39354021 - AluSq SINE Alu -15 298 1 1430 320 121 31 chr9 102917423 102918214 -39353230 + L2 LINE L2 1758 2694 -620 274 182 0 0 chr9 102918214 102918269 -39353175 - L1MB8 LINE L1 -1 6177 6123 2179 94 21 11 chr9 102918370 102918657 -39352787 - AluSc SINE Alu -15 294 5 458 349 122 30 chr9 102918682 102919109 -39352335 + L2 LINE L2 2804 3269 -3 582 225 115 77 chr9 102920046 102920190 -39351254 + MIR SINE MIR 16 172 -90 1846 175 3 13 chr9 102920190 102920505 -39350939 + AluJo SINE Alu 1 312 0 582 225 115 77 chr9 102920505 102920569 -39350875 + MIR SINE MIR 172 232 -30 1074 272 0 0 chr9 102920650 102920896 -39350548 - MIR SINE MIR -13 249 4 323 276 122 32 chr9 102921550 102921706 -39349738 + MIR SINE MIR 72 241 -21 599 202 39 8 chr9 102921776 102921905 -39349539 + L2 LINE L2 3181 3313 0 2547 62 0 3 chr9 102921926 102922231 -39349213 - AluSq SINE Alu -9 304 1 428 316 198 22 chr9 102922295 102922573 -39348871 + L2 LINE L2 2946 3272 0 277 238 19 76 chr9 102923086 102923191 -39348253 + MLT1K LTR MaLR 481 579 -9 319 225 59 128 chr9 102923492 102923679 -39347765 + MLT1H LTR MaLR 373 546 -3 1469 163 35 52 chr9 102924067 102924355 -39347089 - AluJo SINE Alu -19 293 11 238 188 0 0 chr9 102924768 102924816 -39346628 + Alu SINE Alu 254 301 -1 722 242 199 34 chr9 102924831 102925273 -39346171 - L1ME4a LINE L1 -58 6063 5549 2090 100 0 34 chr9 102925353 102925644 -39345800 - AluSq SINE Alu -32 281 1 302 331 24 18 chr9 102926047 102926213 -39345231 + MIR SINE MIR 96 262 0 329 240 48 19 chr9 102926337 102926441 -39345003 + MIR SINE MIR 24 130 -132 27 0 0 0 chr9 102926639 102926666 -39344778 + GC_rich Low_complexity Low_complexity 1 27 0 250 224 14 61 chr9 102926832 102926979 -39344465 + C-rich Low_complexity Low_complexity 3 142 0 23 68 0 0 chr9 102927614 102927658 -39343786 + GC_rich Low_complexity Low_complexity 1 44 0 369 0 0 0 chr9 102929330 102929371 -39342073 + (TG)n Simple_repeat Simple_repeat 2 42 0 238 360 60 0 chr9 102929591 102929691 -39341753 + MIR3 SINE MIR 75 180 -28 207 263 18 18 chr9 102929911 102929968 -39341476 - L3 LINE CR1 -561 1016 960 2170 113 7 0 chr9 102930016 102930307 -39341137 - AluSx SINE Alu -19 293 1 2573 47 0 0 chr9 102930314 102930610 -39340834 - AluY SINE Alu -15 296 1 690 285 88 64 chr9 102930618 102931116 -39340328 - L3 LINE CR1 -732 845 336 2274 98 3 7 chr9 102931235 102931541 -39339903 - AluSx SINE Alu -7 305 1 1098 172 36 10 chr9 102931929 102932145 -39339299 - AluJb SINE Alu 0 305 85 4849 145 12 4 chr9 102933015 102933813 -39337631 - L1MB7 LINE L1 -54 6130 5326 620 267 149 45 chr9 102934610 102934985 -39336459 + L2 LINE L2 2900 3313 0 211 241 0 0 chr9 102935039 102935097 -39336347 - L2 LINE L2 -300 2972 2915 186 43 0 0 chr9 102935366 102935389 -39336055 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2115 112 17 7 chr9 102935392 102935688 -39335756 - AluSc SINE Alu -10 299 1 316 269 21 0 chr9 102935688 102935781 -39335663 + Charlie8 DNA MER1_type 47 141 -2276 2348 104 3 0 chr9 102935801 102936110 -39335334 - AluSx SINE Alu -2 310 1 2228 99 0 0 chr9 102936830 102937144 -39334300 + AluSq SINE Alu 3 316 0 347 150 258 17 chr9 102937266 102937386 -39334058 - L1MC4 LINE L1 -2 8040 7892 2539 164 41 95 chr9 102937837 102937934 -39333510 - L1MB8 LINE L1 -40 6131 6030 2249 104 0 3 chr9 102937934 102938232 -39333212 - AluSx SINE Alu -15 297 1 2539 164 41 95 chr9 102938232 102938310 -39333134 - L1MB8 LINE L1 -141 6030 5949 1654 154 68 0 chr9 102938310 102938590 -39332854 - AluSx SINE Alu -13 299 1 2539 164 41 95 chr9 102938590 102939165 -39332279 - L1MB8 LINE L1 -222 5949 5458 2063 129 3 0 chr9 102939868 102940155 -39331289 - AluSq SINE Alu -25 288 1 1776 154 41 17 chr9 102940250 102940542 -39330902 - AluJb SINE Alu -13 299 1 28 0 0 0 chr9 102940745 102940773 -39330671 + AT_rich Low_complexity Low_complexity 1 28 0 1919 159 0 19 chr9 102940766 102941081 -39330363 - AluSx SINE Alu -3 309 1 247 259 99 8 chr9 102941939 102942070 -39329374 - L1MC/D LINE L1 -2057 5751 5609 728 256 76 32 chr9 102942190 102942440 -39329004 - MIR SINE MIR 0 262 2 1204 201 35 44 chr9 102942519 102942818 -39328626 - L1MB7 LINE L1 -16 6168 5871 1672 150 77 0 chr9 102942818 102943104 -39328340 - AluJb SINE Alu -4 308 1 1204 201 35 44 chr9 102943104 102943142 -39328302 - L1MB7 LINE L1 -313 5871 5834 267 213 154 37 chr9 102943146 102943282 -39328162 - L1ME4a LINE L1 -2 6119 5968 495 48 0 0 chr9 102944449 102944511 -39326933 + (TG)n Simple_repeat Simple_repeat 2 63 0 496 212 101 0 chr9 102944518 102944617 -39326827 - FLAM_A SINE Alu -33 109 1 264 187 171 24 chr9 102944629 102944752 -39326692 - L1ME4a LINE L1 -202 5919 5779 22 35 0 0 chr9 102944770 102944799 -39326645 + AT_rich Low_complexity Low_complexity 1 29 0 2353 81 3 19 chr9 102945486 102945796 -39325648 - AluSg SINE Alu -5 305 1 946 171 35 83 chr9 102946654 102946882 -39324562 + MER20 DNA MER1_type 3 219 0 1245 128 4 103 chr9 102947513 102947755 -39323689 + AluJb SINE Alu 1 218 -94 26 0 0 0 chr9 102948158 102948184 -39323260 + AT_rich Low_complexity Low_complexity 1 26 0 264 226 73 48 chr9 102948492 102948616 -39322828 - MLT1L LTR MaLR -384 127 1 2155 124 7 0 chr9 102950077 102950368 -39321076 - AluSx SINE Alu -19 293 1 216 0 0 0 chr9 102951149 102951173 -39320271 + (T)n Simple_repeat Simple_repeat 1 24 0 219 114 0 0 chr9 102952510 102952545 -39318899 + (CA)n Simple_repeat Simple_repeat 1 35 0 344 289 102 0 chr9 102953830 102953958 -39317486 - MLT1F1 LTR MaLR -221 346 206 1949 239 147 22 chr9 102953959 102954980 -39316464 - L1ME LINE L1 -4733 1347 239 238 188 0 0 chr9 102955024 102955072 -39316372 - L1ME4a LINE L1 -462 5659 5612 343 312 141 21 chr9 102955076 102955310 -39316134 - L1ME4a LINE L1 -2250 5558 5297 206 0 69 0 chr9 102955453 102955482 -39315962 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2286 84 0 0 chr9 102955486 102955771 -39315673 - AluSc SINE Alu -24 285 1 1677 179 17 24 chr9 102956193 102956490 -39314954 - AluJo SINE Alu -17 295 1 220 361 52 10 chr9 102956674 102956771 -39314673 - L2 LINE L2 -11 3261 3161 21 57 0 0 chr9 102957054 102957089 -39314355 + AT_rich Low_complexity Low_complexity 1 35 0 1121 226 274 5 chr9 102957334 102957364 -39314080 - MLT2B1 LTR ERVL -2 518 497 378 0 0 0 chr9 102957364 102957406 -39314038 + (CA)n Simple_repeat Simple_repeat 2 43 0 1121 226 274 5 chr9 102957406 102957783 -39313661 - MLT2B1 LTR ERVL -23 497 1 266 198 161 25 chr9 102957783 102957864 -39313580 + L2 LINE L2 3219 3310 -3 486 304 132 9 chr9 102958378 102958598 -39312846 - MIR SINE MIR -3 259 13 804 201 105 0 chr9 102958683 102958922 -39312522 - MER20B DNA MER1_type -4 779 516 2471 81 3 0 chr9 102958960 102959269 -39312175 + AluSg SINE Alu 1 310 0 593 279 73 10 chr9 102959410 102959614 -39311830 - MER20B DNA MER1_type -561 222 6 22 0 0 0 chr9 102959858 102959880 -39311564 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr9 102960222 102960256 -39311188 + AT_rich Low_complexity Low_complexity 1 34 0 2529 56 0 7 chr9 102960312 102960617 -39310827 + AluY SINE Alu 1 303 -8 5041 105 64 0 chr9 102960730 102961559 -39309885 - L1PA16 LINE L1 -10 6156 5275 317 276 92 45 chr9 102961825 102962022 -39309422 - L1MC/D LINE L1 -761 5481 5297 271 295 32 11 chr9 102962153 102962248 -39309196 + L2 LINE L2 2957 3053 -219 2520 63 0 3 chr9 102963320 102963620 -39307824 + AluY SINE Alu 1 299 -12 797 279 47 50 chr9 102964023 102964304 -39307140 - MER77 LTR ERV1 -7 598 317 1809 173 0 17 chr9 102964304 102964599 -39306845 - AluJb SINE Alu -18 294 5 797 279 47 50 chr9 102964599 102964639 -39306805 - MER77 LTR ERV1 -288 317 278 481 296 85 34 chr9 102965138 102965314 -39306130 + MIR SINE MIR 8 192 -70 291 329 0 0 chr9 102965860 102965939 -39305505 + L2 LINE L2 3186 3264 -8 24 0 0 0 chr9 102966822 102966846 -39304598 + AT_rich Low_complexity Low_complexity 1 24 0 236 54 54 0 chr9 102967196 102967233 -39304211 + CT-rich Low_complexity Low_complexity 2 40 0 655 167 18 128 chr9 102967233 102967460 -39303984 - L1MB8 LINE L1 0 6178 5977 276 204 0 0 chr9 102968044 102968093 -39303351 - L3 LINE CR1 -1 1576 1528 180 256 280 8 chr9 102968111 102968236 -39303208 + L3 LINE CR1 1331 1489 -88 229 176 27 95 chr9 102968253 102968327 -39303117 - MIR3 SINE MIR -18 190 122 1554 139 111 32 chr9 102968397 102968541 -39302903 + AluJb SINE Alu 1 132 -180 2517 70 0 10 chr9 102968541 102968854 -39302590 + AluSx SINE Alu 1 310 -2 1554 139 111 32 chr9 102968854 102968989 -39302455 + AluJb SINE Alu 132 302 -10 21 0 0 0 chr9 102969024 102969045 -39302399 + AT_rich Low_complexity Low_complexity 1 21 0 1955 104 38 76 chr9 102969334 102969650 -39301794 + AluSg SINE Alu 1 304 -6 458 200 0 0 chr9 102972012 102972097 -39299347 + AluJ/FLAM SINE Alu 1 85 -227 2001 103 35 31 chr9 102972959 102973271 -39298173 + AluSc SINE Alu 1 309 0 189 327 0 0 chr9 102973274 102973326 -39298118 - MIR3 SINE MIR -45 163 112 261 0 0 0 chr9 102973475 102973504 -39297940 + (T)n Simple_repeat Simple_repeat 1 29 0 705 207 70 70 chr9 102973659 102973915 -39297529 + MER112 DNA MER1_type 1 256 0 898 178 13 19 chr9 102973992 102974149 -39297295 + AluJb SINE Alu 137 292 -20 22 0 0 0 chr9 102975051 102975073 -39296371 + AT_rich Low_complexity Low_complexity 1 22 0 2437 88 0 0 chr9 102976255 102976562 -39294882 - AluSg1 SINE Alu -2 307 1 2208 93 0 14 chr9 102976575 102976865 -39294579 - AluY SINE Alu -25 286 1 309 247 119 112 chr9 102976998 102977249 -39294195 + L2 LINE L2 2934 3186 -86 21 36 0 0 chr9 102977962 102977990 -39293454 + AT_rich Low_complexity Low_complexity 1 28 0 1398 50 22 0 chr9 102978572 102978752 -39292692 - L1PA6 LINE L1 -1 6153 5970 288 269 0 0 chr9 102978909 102978976 -39292468 - HAL1 LINE L1 -628 1879 1813 1689 219 136 65 chr9 102978976 102979699 -39291745 - MER21B LTR ERV1 -76 787 14 1346 237 163 26 chr9 102979713 102980414 -39291030 - HAL1 LINE L1 -697 1810 1014 301 237 123 35 chr9 102980545 102980659 -39290785 - L1M4 LINE L1 -2461 3754 3631 1346 163 40 104 chr9 102980660 102980986 -39290458 + AluYb8 SINE Alu 1 305 -13 40826 33 24 2 chr9 102981055 102987075 -39284369 + L1PA2 LINE L1 2 6155 0 253 253 79 69 chr9 102987094 102987498 -39283946 - L1M4 LINE L1 -2633 3582 3175 2333 105 0 0 chr9 102987536 102987840 -39283604 - AluSc SINE Alu -5 304 1 268 246 148 21 chr9 102987852 102987994 -39283450 - L2 LINE L2 -288 3025 2866 420 143 0 0 chr9 102988755 102988825 -39282619 - MER58 DNA MER1_type -3 2417 2348 323 230 27 0 chr9 102988836 102988910 -39282534 - MER58 DNA MER1_type -2321 99 24 22 0 0 0 chr9 102988953 102988975 -39282469 + AT_rich Low_complexity Low_complexity 1 22 0 2012 141 24 0 chr9 102989312 102989603 -39281841 + AluSx SINE Alu 1 298 -14 1309 304 226 21 chr9 102990479 102991500 -39279944 + L3 LINE CR1 337 1566 -11 26 0 0 0 chr9 102991765 102991791 -39279653 + AT_rich Low_complexity Low_complexity 1 26 0 2153 92 10 17 chr9 102991886 102992179 -39279265 - AluSc SINE Alu -18 291 1 345 240 0 21 chr9 102992200 102992296 -39279148 + MER8 DNA MER2_type 1 94 -145 640 261 48 11 chr9 102992452 102992720 -39278724 - L1ME3A LINE L1 -223 5947 5670 2012 142 3 7 chr9 102992733 102993029 -39278415 - AluSx SINE Alu -17 295 1 3153 126 180 141 chr9 102993150 102994197 -39277247 - pTR5 LTR ERV1 0 2438 1352 727 187 45 56 chr9 102994307 102994505 -39276939 - pTR5 LTR ERV1 -1500 938 743 558 225 45 21 chr9 102994505 102994777 -39276667 - L1ME3A LINE L1 -620 5544 5257 2022 144 3 16 chr9 102995187 102995499 -39275945 - AluSg SINE Alu -2 308 1 497 283 98 20 chr9 102995500 102995946 -39275498 - L1MEd LINE L1 -3621 2594 2148 580 306 46 18 chr9 102996420 102996747 -39274697 - L1MEd LINE L1 -976 1600 1161 2290 99 7 0 chr9 102996747 102997050 -39274394 - AluSp SINE Alu -8 305 1 580 306 46 18 chr9 102997050 102997239 -39274205 - L1MEd LINE L1 -1415 1161 979 471 278 8 97 chr9 102997311 102997420 -39274024 - L1MEd LINE L1 -5426 779 662 1145 78 208 10 chr9 102997420 102997527 -39273917 + MER30 DNA MER1_type 1 86 -144 387 0 0 0 chr9 102997527 102997570 -39273874 + (CA)n Simple_repeat Simple_repeat 2 44 0 1145 78 208 10 chr9 102997570 102997654 -39273790 + MER30 DNA MER1_type 86 230 0 471 278 8 97 chr9 102997654 102997803 -39273641 - L1MEd LINE L1 -5543 662 544 21 36 0 0 chr9 102997910 102997938 -39273506 + AT_rich Low_complexity Low_complexity 1 28 0 2491 106 8 22 chr9 102998044 102998413 -39273031 - THE1B LTR MaLR 0 364 1 10886 89 24 12 chr9 102998413 102999973 -39271471 - THE1B-int LTR MaLR 0 1580 2 2220 113 24 46 chr9 102999974 103000346 -39271098 - THE1B LTR MaLR 0 364 1 232 290 23 23 chr9 103000477 103000608 -39270836 - L1MEd LINE L1 -5984 221 91 292 364 67 24 chr9 103000780 103000845 -39270599 - MIR SINE MIR -43 219 158 1919 171 0 0 chr9 103000845 103001138 -39270306 - AluJo SINE Alu -19 293 1 292 364 67 24 chr9 103001138 103001281 -39270163 - MIR SINE MIR -104 158 2 23 92 0 0 chr9 103001825 103001890 -39269554 + AT_rich Low_complexity Low_complexity 1 65 0 1958 154 131 13 chr9 103002891 103003274 -39268170 - MSTA LTR MaLR 0 428 1 307 187 27 0 chr9 103004183 103004258 -39267186 - L1MD2 LINE L1 -1 6358 6282 748 329 55 29 chr9 103004310 103004657 -39266787 + L2 LINE L2 2917 3272 0 285 306 18 45 chr9 103004656 103004767 -39266677 - MIR SINE MIR -85 123 16 * 529 259 8 8 chr9 103005005 103005136 -39266308 + MIR SINE MIR 131 261 -1 330 326 91 29 chr9 103005728 103006138 -39265306 - L2 LINE L2 -212 3060 2627 213 188 0 78 chr9 103006365 103006429 -39265015 - L2 LINE L2 -1070 2244 2186 291 176 0 0 chr9 103006437 103006488 -39264956 - MER3 DNA MER1_type -6 203 153 1042 206 43 0 chr9 103006491 103006700 -39264744 + AluJb SINE Alu 81 298 -14 568 194 0 0 chr9 103006705 103006808 -39264636 - MER3 DNA MER1_type -98 111 9 203 122 61 20 chr9 103007096 103007145 -39264299 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 251 233 67 11 chr9 103007548 103007638 -39263806 - L1MC5 LINE L1 -70 7891 7797 387 41 0 0 chr9 103008977 103009026 -39262418 + (CA)n Simple_repeat Simple_repeat 2 50 0 293 286 245 0 chr9 103009308 103009455 -39261989 + MIR SINE MIR 6 188 -74 259 173 0 19 chr9 103009622 103009674 -39261770 - L2 LINE L2 0 3313 3263 * 478 246 256 5 chr9 103009641 103009836 -39261608 - MIR SINE MIR -13 249 6 317 286 11 11 chr9 103010001 103010092 -39261352 + L2 LINE L2 3222 3312 -1 261 231 221 48 chr9 103010443 103010547 -39260897 + L3 LINE CR1 1446 1567 -10 1049 141 6 6 chr9 103010671 103010834 -39260610 - AluSg/x SINE Alu -17 295 133 834 180 14 38 chr9 103010933 103011144 -39260300 - L1MB8 LINE L1 -2 6176 5971 196 314 57 74 chr9 103011560 103011735 -39259709 + L2 LINE L2 3101 3272 0 202 156 0 0 chr9 103012561 103012593 -39258851 - L2 LINE L2 0 3272 3241 937 221 7 99 chr9 103012615 103012887 -39258557 - MIR SINE MIR -13 249 3 182 337 102 51 chr9 103012887 103012977 -39258467 - L2 LINE L2 -44 3228 3134 180 121 61 0 chr9 103013087 103013120 -39258324 - MIR3 SINE MIR -7 201 167 * 314 311 100 0 chr9 103013118 103013208 -39258236 + L2 LINE L2 3156 3254 -18 1159 172 73 7 chr9 103013227 103013530 -39257914 + MER33 DNA MER1_type 2 324 0 266 280 19 84 chr9 103013545 103013652 -39257792 - MIR SINE MIR -90 118 19 235 252 107 23 chr9 103014053 103014184 -39257260 - MIR SINE MIR -58 204 63 205 156 0 0 chr9 103014348 103014380 -39257064 + (TG)n Simple_repeat Simple_repeat 1 32 0 255 241 35 35 chr9 103014536 103014652 -39256792 + HAL1b LINE L1 1222 1337 -11 22 70 0 0 chr9 103015559 103015602 -39255842 + AT_rich Low_complexity Low_complexity 1 43 0 364 215 51 0 chr9 103015809 103015888 -39255556 - MIR SINE MIR -91 117 35 2141 104 0 7 chr9 103016444 103016773 -39254671 - AluSc SINE Alu 0 327 1 762 188 0 0 chr9 103016777 103016910 -39254534 - FLAM_C SINE Alu -10 133 1 693 265 44 0 chr9 103017159 103017340 -39254104 + MIR SINE MIR 61 249 -13 442 257 53 0 chr9 103017352 103017465 -39253979 + L2 LINE L2 3148 3266 -6 2370 105 0 0 chr9 103017728 103018032 -39253412 - AluSx SINE Alu -8 304 1 201 121 0 0 chr9 103018043 103018076 -39253368 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 465 299 130 48 chr9 103018259 103018842 -39252602 - L2 LINE L2 -457 2857 2227 3141 264 176 80 chr9 103018845 103020374 -39251070 + L2 LINE L2 886 2267 -1046 1639 135 0 0 chr9 103020374 103020604 -39250840 - AluSg/x SINE Alu -1 309 80 531 115 58 0 chr9 103020610 103020697 -39250747 - AluSq/x SINE Alu -187 125 34 3141 264 176 80 chr9 103020697 103021284 -39250160 + L2 LINE L2 2271 3310 -3 2275 118 16 22 chr9 103021450 103021816 -39249628 - THE1B LTR MaLR 0 364 1 362 73 0 18 chr9 103022248 103022303 -39249141 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 3657 159 56 22 chr9 103022305 103023355 -39248089 - L1MB8 LINE L1 -67 6111 5033 933 130 104 0 chr9 103023368 103023560 -39247884 - L1MA8 LINE L1 -10 6281 6070 1470 122 4 0 chr9 103023667 103023904 -39247540 - L1MA8 LINE L1 -505 5795 5558 1251 196 26 8 chr9 103023904 103024170 -39247274 - L1MB8 LINE L1 -1091 5055 4785 257 331 22 11 chr9 103024694 103024878 -39246566 + L1ME LINE L1 5564 5749 -372 953 87 17 52 chr9 103024969 103025102 -39246342 + L1MA8 LINE L1 6116 6243 -48 3641 117 2 24 chr9 103025102 103025641 -39245803 - MER1A DNA MER1_type 0 527 1 953 87 17 52 chr9 103025641 103025679 -39245765 + L1MA8 LINE L1 6243 6281 -10 438 161 11 0 chr9 103025704 103025791 -39245653 + L1M4 LINE L1 5044 5131 -1015 861 147 100 13 chr9 103026509 103026659 -39244785 - FRAM SINE Alu -14 162 1 283 296 58 0 chr9 103027512 103027604 -39243840 - MIR SINE MIR -87 121 23 1605 133 51 20 chr9 103027922 103028177 -39243267 - AluJb SINE Alu -23 289 27 353 233 67 33 chr9 103028206 103028326 -39243118 - MIR3 SINE MIR -7 201 78 380 300 46 15 chr9 103028842 103028972 -39242472 - MIR3 SINE MIR -7 201 68 249 267 48 38 chr9 103028981 103029086 -39242358 + MIR SINE MIR 99 204 -58 204 223 39 61 chr9 103029204 103029304 -39242140 - MIR3 SINE MIR -26 182 55 27 49 0 0 chr9 103031082 103031123 -39240321 + AT_rich Low_complexity Low_complexity 1 41 0 260 330 10 48 chr9 103032395 103032498 -39238946 - MIR3 SINE MIR -3 205 107 284 333 20 27 chr9 103033020 103033170 -39238274 + L1MC/D LINE L1 5508 5656 -2152 1177 164 27 27 chr9 103033627 103033847 -39237597 + AluJb SINE Alu 87 306 -6 966 102 4 186 chr9 103034668 103034904 -39236540 - 7SK RNA RNA 0 193 1 258 242 123 73 chr9 103035775 103035856 -39235588 + L2 LINE L2 1881 1956 -1358 213 39 0 0 chr9 103035856 103035882 -39235562 + (TC)n Simple_repeat Simple_repeat 2 27 0 1396 197 48 0 chr9 103035888 103036157 -39235287 - AluJo SINE Alu -30 282 1 258 242 123 73 chr9 103036157 103036287 -39235157 + L2 LINE L2 1960 2110 -1204 21 36 0 0 chr9 103036316 103036344 -39235100 + AT_rich Low_complexity Low_complexity 1 28 0 662 190 176 23 chr9 103036367 103036583 -39234861 + MER46C DNA MER2_type 72 320 -18 1714 263 142 28 chr9 103036606 103037136 -39234308 + L2 LINE L2 2168 2636 -677 411 21 0 0 chr9 103037136 103037184 -39234260 + (TTCA)n Simple_repeat Simple_repeat 3 50 0 2146 105 7 0 chr9 103037184 103037469 -39233975 - AluSx SINE Alu -25 287 1 1714 263 142 28 chr9 103037469 103037842 -39233602 + L2 LINE L2 2635 3205 -108 407 239 111 17 chr9 103037947 103038064 -39233380 - L2 LINE L2 -5 3308 3181 712 227 0 0 chr9 103038260 103038388 -39233056 + FLAM_A SINE Alu 2 129 -4 535 351 86 37 chr9 103038510 103039233 -39232211 - L2 LINE L2 -509 2805 2048 2637 215 78 43 chr9 103040223 103040745 -39230699 + L1ME2 LINE L1 4295 4797 -1367 831 156 0 0 chr9 103040745 103040867 -39230577 - FLAM_C SINE Alu -11 122 1 2637 215 78 43 chr9 103040867 103042095 -39229349 + L1ME2 LINE L1 4797 6155 -9 225 267 8 30 chr9 103042382 103042513 -39228931 + L1M LINE L1 5299 5426 -738 2224 66 36 40 chr9 103042978 103043281 -39228163 + AluY SINE Alu 1 302 -9 1919 141 0 27 chr9 103043714 103044013 -39227431 + AluSx SINE Alu 1 291 -21 471 234 159 14 chr9 103044324 103044469 -39226975 - MIR3 SINE MIR -2 206 41 553 295 12 30 chr9 103044786 103044952 -39226492 - MER5B DNA MER1_type -14 164 2 739 224 16 36 chr9 103044962 103045154 -39226290 + MER5A DNA MER1_type 2 189 0 615 245 119 0 chr9 103045183 103045342 -39226102 + MER58A DNA MER1_type 45 222 -2 413 256 202 0 chr9 103045348 103045477 -39225967 - MER5A DNA MER1_type -2 187 33 2302 111 0 0 chr9 103045516 103045814 -39225630 + AluSx SINE Alu 14 311 -1 237 65 0 0 chr9 103045817 103045848 -39225596 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 1156 163 116 0 chr9 103045848 103046125 -39225319 - MER33 DNA MER1_type -15 309 1 1214 197 90 30 chr9 103046248 103046583 -39224861 + LTR2B LTR ERV1 34 388 -102 2135 191 51 23 chr9 103047228 103047714 -39223730 - MLT1D LTR MaLR -5 500 1 12073 60 76 5 chr9 103047780 103049507 -39221937 + L1P LINE L1 1 1851 -4295 566 208 76 0 chr9 103050181 103050325 -39221119 - MER63C DNA MER1_type 0 930 776 369 200 100 0 chr9 103050325 103050425 -39221019 + L1MB7 LINE L1 6063 6172 -12 1015 129 0 0 chr9 103050443 103050583 -39220861 - FRAM SINE Alu -19 157 18 2275 213 60 34 chr9 103050643 103051409 -39220035 - MER63C DNA MER1_type -144 786 1 227 205 16 134 chr9 103051537 103051664 -39219780 + MER102a DNA MER1_type 218 329 -1 3141 30 0 0 chr9 103051722 103052095 -39219349 - L1PA2 LINE L1 -3 6152 5780 9513 159 20 30 chr9 103052097 103053934 -39217510 - L1P LINE L1 -4318 1828 11 1094 149 5 5 chr9 103053956 103054157 -39217287 - L1MD1 LINE L1 0 6242 6042 1004 191 139 0 chr9 103054157 103054408 -39217036 - L1MDa LINE L1 -6227 313 28 1736 192 45 61 chr9 103054813 103055255 -39216189 - MER63B DNA MER1_type -1 435 1 302 267 237 42 chr9 103058031 103058293 -39213151 - L1MC4a LINE L1 -1674 6134 5822 198 224 41 0 chr9 103058387 103058436 -39213008 - L2 LINE L2 -5 3267 3217 2194 110 13 3 chr9 103058472 103058773 -39212671 - AluSg SINE Alu -6 304 1 817 282 68 13 chr9 103060290 103060524 -39210920 + MIR SINE MIR 16 262 0 1740 169 0 28 chr9 103060740 103061030 -39210414 - AluJo SINE Alu -21 291 10 243 125 0 0 chr9 103061471 103061511 -39209933 + (TC)n Simple_repeat Simple_repeat 1 40 0 541 35 0 47 chr9 103061516 103061602 -39209842 + (TTCCC)n Simple_repeat Simple_repeat 3 84 0 1249 142 19 33 chr9 103061609 103061821 -39209623 - AluSg/x SINE Alu -38 274 66 12931 72 9 2 chr9 103061821 103063680 -39207764 - L1P LINE L1 -2449 3697 1827 12331 204 20 7 chr9 103063820 103067010 -39204434 - L1 LINE L1 -1157 4989 1773 17402 48 1 0 chr9 103067127 103070066 -39201378 + L1PA5 LINE L1 3199 6143 -11 5302 61 3 1 chr9 103070072 103070749 -39200695 + L1PA6 LINE L1 5474 6151 -3 3027 99 27 2 chr9 103070769 103071253 -39200191 + L1MA3 LINE L1 5488 5983 -322 271 77 0 0 chr9 103071251 103071290 -39200154 + L1MA1 LINE L1 6256 6294 -8 * 1719 110 97 1 chr9 103071632 103071950 -39199494 + L1MA2 LINE L1 5669 5941 -224 5991 73 12 1 chr9 103072088 103073074 -39198370 - L1P3 LINE L1 -647 5507 4510 * 8034 106 5 9 chr9 103073072 103074343 -39197101 - L1P3 LINE L1 -3477 2669 1405 493 242 16 8 chr9 103074486 103074614 -39196830 + MER94 DNA DNA 6 134 0 258 81 0 0 chr9 103075005 103075042 -39196402 + (TG)n Simple_repeat Simple_repeat 2 38 0 2170 67 0 3 chr9 103075879 103076163 -39195281 + L1PA7 LINE L1 5867 6149 -5 881 75 75 0 chr9 103076172 103076306 -39195138 - MER30 DNA MER1_type -86 144 1 257 403 104 31 chr9 103076566 103076854 -39194590 - L2 LINE L2 -390 2924 2616 1709 174 56 0 chr9 103077653 103077940 -39193504 + AluJo SINE Alu 1 303 -9 245 320 78 0 chr9 103077958 103078111 -39193333 + L1MC5 LINE L1 7714 7878 -83 1659 152 26 47 chr9 103078111 103078380 -39193064 - MER7A DNA MER2_type -2692 346 86 2065 136 10 10 chr9 103078380 103078682 -39192762 + AluSx SINE Alu 1 302 -10 1659 152 26 47 chr9 103078682 103078754 -39192690 - MER7A DNA MER2_type -2952 86 14 2202 122 42 33 chr9 103078980 103079341 -39192103 + THE1B LTR MaLR 1 364 0 546 265 214 0 chr9 103079682 103079897 -39191547 - MIR SINE MIR -1 261 1 270 152 45 30 chr9 103080315 103080381 -39191063 + MLT1H LTR MaLR 13 79 -470 291 340 152 4 chr9 103080960 103081210 -39190234 + L2 LINE L2 909 1195 -2119 2390 160 41 83 chr9 103081246 103081773 -39189671 + MLT2B3 LTR ERVL 1 413 -40 238 266 16 0 chr9 103081774 103081838 -39189606 - MER2 DNA MER2_type 0 345 281 705 259 0 40 chr9 103081844 103082018 -39189426 - MER8 DNA MER2_type -72 167 1 300 127 18 0 chr9 103082043 103082098 -39189346 + MLT2B1 LTR ERVL 465 520 0 263 276 183 61 chr9 103082110 103082422 -39189022 + L2 LINE L2 1319 1668 -1646 1698 200 59 82 chr9 103082449 103082974 -39188470 + MLT2B3 LTR ERVL 2 514 -40 251 346 111 0 chr9 103083149 103083311 -39188133 + L2 LINE L2 1733 1912 -1402 1283 295 135 12 chr9 103083467 103084106 -39187338 - L2 LINE L2 -225 3088 2381 297 0 0 0 chr9 103084111 103084144 -39187300 + (T)n Simple_repeat Simple_repeat 1 33 0 189 304 0 38 chr9 103084168 103084247 -39187197 - L2 LINE L2 -938 2376 2301 1033 280 114 44 chr9 103084501 103084653 -39186791 - L2 LINE L2 -1015 2299 2159 2407 106 0 0 chr9 103084653 103084965 -39186479 + AluSx SINE Alu 1 312 0 2184 197 88 8 chr9 103084974 103085442 -39186002 - MLT1D LTR MaLR 0 505 1 1033 280 114 44 chr9 103085442 103085825 -39185619 - L2 LINE L2 -1162 2152 1716 417 227 0 0 chr9 103085828 103085938 -39185506 + CT-rich Low_complexity Low_complexity 3 112 0 577 285 87 0 chr9 103085946 103086153 -39185291 - L2 LINE L2 -1606 1708 1484 450 262 97 94 chr9 103086156 103086549 -39184895 - MLT1J LTR MaLR 0 511 118 6651 46 5 1 chr9 103086836 103087701 -39183743 - L1PA5 LINE L1 0 6154 5287 6434 47 3 3 chr9 103087696 103088570 -39182874 + L1P LINE L1 2982 3855 -2291 * 213 314 144 0 chr9 103089035 103089153 -39182291 - L2 LINE L2 -232 3040 2906 23 33 0 0 chr9 103089340 103089370 -39182074 + AT_rich Low_complexity Low_complexity 1 30 0 240 344 11 44 chr9 103089790 103089828 -39181616 - L2 LINE L2 -37 3235 3197 2755 155 33 40 chr9 103089828 103090397 -39181047 + MER34B LTR ERV1 1 565 0 240 344 11 44 chr9 103090397 103090448 -39180996 - L2 LINE L2 -75 3197 3149 392 277 99 36 chr9 103090608 103090861 -39180583 - L1ME LINE L1 -363 5758 5490 232 395 0 0 chr9 103090931 103091045 -39180399 + L3 LINE CR1 1368 1481 -96 348 261 70 21 chr9 103091642 103091784 -39179660 - L1ME4a LINE L1 -220 5901 5753 1698 184 86 9 chr9 103093084 103093420 -39178024 - MLT1A1 LTR MaLR 0 365 4 227 220 119 0 chr9 103093561 103093620 -39177824 + MER112 DNA MER1_type 1 66 -194 369 350 76 5 chr9 103093820 103094186 -39177258 - L1ME4a LINE L1 -529 5592 5328 271 74 19 74 chr9 103094379 103094433 -39177011 - AluJ/FLAM SINE Alu -222 80 30 3769 99 4 4 chr9 103094504 103095081 -39176363 + L1PB1 LINE L1 5193 5768 -383 225 103 0 0 chr9 103095098 103095137 -39176307 - LTR66 LTR ERVL -178 432 394 258 231 0 0 chr9 103095137 103095202 -39176242 + (CA)n Simple_repeat Simple_repeat 2 66 0 2579 94 25 8 chr9 103095202 103095564 -39175880 + L1PB1 LINE L1 5782 6149 -2 780 159 8 15 chr9 103095632 103095764 -39175680 - FLAM_C SINE Alu -12 131 1 299 300 27 27 chr9 103097472 103097582 -39173862 + MER5B DNA MER1_type 69 178 0 2357 42 3 7 chr9 103098812 103099116 -39172328 + AluY SINE Alu 2 304 0 23 33 0 0 chr9 103100021 103100051 -39171393 + AT_rich Low_complexity Low_complexity 1 30 0 1276 14 7 0 chr9 103100240 103100381 -39171063 - L1PA6 LINE L1 -6 6148 6007 20175 120 28 16 chr9 103100487 103103653 -39167791 - L1P LINE L1 -2932 3214 11 2310 143 19 25 chr9 103104476 103104840 -39166604 - THE1B LTR MaLR 0 364 3 10813 103 6 82 chr9 103104842 103106551 -39164893 - THE1B-int LTR MaLR 0 1580 2 2331 118 45 20 chr9 103106552 103106907 -39164537 - THE1B LTR MaLR 0 364 1 772 259 35 13 chr9 103106980 103107208 -39164236 + MIR SINE MIR 2 234 -28 271 365 74 26 chr9 103107477 103107707 -39163737 - MIR SINE MIR -12 250 10 339 145 0 0 chr9 103108873 103108942 -39162502 + (TG)n Simple_repeat Simple_repeat 1 69 0 1966 149 0 0 chr9 103108958 103109254 -39162190 - AluSx SINE Alu -16 296 1 430 333 80 55 chr9 103109323 103109635 -39161809 + L2 LINE L2 2947 3266 -6 1603 164 141 11 chr9 103109852 103110199 -39161245 - MLT1C LTR MaLR 0 467 76 839 88 0 0 chr9 103110199 103110301 -39161143 - AluSg/x SINE Alu -62 250 149 355 172 77 0 chr9 103110317 103110390 -39161054 - MLT1C LTR MaLR -311 79 1 449 208 10 0 chr9 103111276 103111377 -39160067 - MER5B DNA MER1_type -73 105 4 1820 138 93 39 chr9 103112686 103113042 -39158402 - THE1C LTR MaLR 0 375 1 26 64 0 0 chr9 103113561 103113608 -39157836 + AT_rich Low_complexity Low_complexity 1 47 0 2376 155 47 2 chr9 103113617 103114023 -39157421 + L1MB4 LINE L1 5748 6171 -9 680 62 10 0 chr9 103114213 103114309 -39157135 + THE1A-int LTR MaLR 1484 1580 0 2924 82 0 3 chr9 103114309 103114665 -39156779 + THE1A LTR MaLR 1 355 0 245 227 0 40 chr9 103114665 103114740 -39156704 + L1MA9 LINE L1 6211 6282 -30 2388 98 0 3 chr9 103114867 103115173 -39156271 + AluY SINE Alu 1 305 -6 674 266 23 0 chr9 103116252 103116425 -39155019 - MIR SINE MIR -11 251 75 4599 146 31 3 chr9 103117271 103118020 -39153424 - L1MA6 LINE L1 0 6300 5531 4308 136 26 10 chr9 103118020 103118698 -39152746 + L1 LINE L1 3856 4710 -1436 222 62 0 0 chr9 103118698 103118730 -39152714 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4308 136 26 10 chr9 103118730 103118894 -39152550 + L1 LINE L1 4710 4870 -1276 669 254 0 0 chr9 103118895 103119033 -39152411 + MER52A LTR ERV1 1 138 -1617 7131 163 15 87 chr9 103119037 103120558 -39150886 + MER52A LTR ERV1 375 1755 0 2096 141 30 3 chr9 103120572 103120940 -39150504 + L1 LINE L1 4896 5273 -873 21 0 0 0 chr9 103121755 103121776 -39149668 + AT_rich Low_complexity Low_complexity 1 21 0 221 338 91 0 chr9 103121967 103122044 -39149400 - L2 LINE L2 -37 3235 3152 487 333 21 7 chr9 103122666 103122810 -39148634 - MIR SINE MIR -104 158 13 442 194 23 180 chr9 103122815 103122888 -39148556 + MER5A DNA MER1_type 7 90 -99 2092 114 6 22 chr9 103122888 103123203 -39148241 + AluSg SINE Alu 1 310 0 442 194 23 180 chr9 103123203 103123346 -39148098 + MER5A DNA MER1_type 90 189 0 7571 196 145 12 chr9 103124585 103126501 -39144943 - L1PBa LINE L1 -4688 2175 6 3351 88 62 69 chr9 103126511 103126711 -39144733 - L1MA2 LINE L1 -46 6258 6058 2265 170 70 5 chr9 103126711 103127110 -39144334 + MSTA LTR MaLR 4 428 0 3351 88 62 69 chr9 103127110 103127509 -39143935 - L1MA2 LINE L1 -246 6058 5669 290 77 0 0 chr9 103127851 103127890 -39143554 - L1MA3 LINE L1 -9 7715 7677 * 3307 97 25 2 chr9 103127888 103128373 -39143071 - L1MA3 LINE L1 -322 7402 6907 5849 53 1 1 chr9 103128393 103129071 -39142373 - L1PA6 LINE L1 -3 6151 5474 40732 74 10 5 chr9 103129077 103131140 -39140304 - L1PA5 LINE L1 -11 6143 4092 2876 16 0 0 chr9 103131140 103131451 -39139993 - AluYa5 SINE Alu 0 311 1 40732 74 10 5 chr9 103131451 103135498 -39135946 - L1PA5 LINE L1 -2062 4092 2 7957 144 19 100 chr9 103135490 103137388 -39134056 - L1MA3 LINE L1 -743 6822 5219 * 2177 129 0 0 chr9 103137388 103137682 -39133762 - AluSx SINE Alu -18 294 1 7957 144 19 100 chr9 103137682 103137819 -39133625 - L1MA3 LINE L1 -2346 5219 5073 1354 188 75 4 chr9 103137814 103138069 -39133375 - L1MA3 LINE L1 -7120 445 173 * 2261 136 39 30 chr9 103138074 103138435 -39133009 - THE1B LTR MaLR 0 364 1 11567 100 6 17 chr9 103138441 103139648 -39131796 - THE1B-int LTR MaLR -7 1573 387 1846 157 0 11 chr9 103139648 103139929 -39131515 + AluSx SINE Alu 1 278 -34 11567 100 6 17 chr9 103139929 103140312 -39131132 - THE1B-int LTR MaLR -1193 387 1 2197 149 36 30 chr9 103140312 103140674 -39130770 - THE1B LTR MaLR 0 364 1 887 113 53 20 chr9 103140676 103140827 -39130617 - L1MA3 LINE L1 -7395 170 15 184 289 0 0 chr9 103140974 103141026 -39130418 + L2 LINE L2 2175 2226 -1088 222 344 86 16 chr9 103141701 103141829 -39129615 + L2 LINE L2 2917 3053 -219 2884 88 3 0 chr9 103142641 103142995 -39128449 + THE1A LTR MaLR 1 355 0 220 284 53 95 chr9 103143836 103144026 -39127418 + MIR SINE MIR 68 249 -13 3457 135 44 3 chr9 103144070 103144663 -39126781 - L1MA4 LINE L1 -6 6294 5678 1097 223 41 44 chr9 103145685 103146003 -39125441 + MER58B DNA MER1_type 13 329 -12 264 200 40 0 chr9 103146169 103146219 -39125225 + L2 LINE L2 3262 3313 0 301 210 22 4 chr9 103146871 103146962 -39124482 - MLT1L LTR MaLR -331 180 111 183 266 0 47 chr9 103147426 103147490 -39123954 - MIR3 SINE MIR -9 199 139 429 294 32 8 chr9 103147838 103147964 -39123480 - MIR3 SINE MIR -22 186 58 2253 121 30 27 chr9 103147971 103148377 -39123067 + L1MA3 LINE L1 5899 6305 0 292 207 153 9 chr9 103148603 103148672 -39122772 - L1MA10 LINE L1 -7 6327 6269 369 0 0 0 chr9 103148672 103148713 -39122731 + (CA)n Simple_repeat Simple_repeat 2 42 0 292 207 153 9 chr9 103148713 103148754 -39122690 - L1MA10 LINE L1 -65 6269 6201 6000 91 37 11 chr9 103148819 103150474 -39120970 - L1PA14 LINE L1 -1 6160 4465 * 7723 19 1 0 chr9 103150470 103152065 -39119379 - L1PA3 LINE L1 -2 6153 4557 5891 11 3 0 chr9 103152166 103152872 -39118572 - L1PA3 LINE L1 -144 6011 5304 7883 30 0 0 chr9 103152872 103153865 -39117579 + L1PA3 LINE L1 4289 5281 -865 6260 174 19 12 chr9 103153864 103155156 -39116288 - L1PA3 LINE L1 -1671 4475 3176 * 912 267 117 16 chr9 103155177 103155784 -39115660 - L1MEc LINE L1 -4965 1431 764 335 276 59 29 chr9 103156220 103156390 -39115054 - L1ME4a LINE L1 -157 5964 5790 234 244 35 9 chr9 103156743 103156858 -39114586 - L1ME4a LINE L1 -756 5390 5273 1360 214 35 40 chr9 103157137 103157507 -39113937 - MLT1B LTR MaLR -22 368 1 180 0 0 0 chr9 103157516 103157536 -39113908 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2634 116 12 5 chr9 103157542 103157946 -39113498 - L1PB1 LINE L1 0 6151 5745 22 35 0 0 chr9 103158027 103158056 -39113388 + AT_rich Low_complexity Low_complexity 1 29 0 503 337 75 32 chr9 103158233 103158580 -39112864 - L1MEc LINE L1 -4759 1551 1190 972 262 86 53 chr9 103158582 103159277 -39112167 - L1MEc LINE L1 -4982 1137 420 1839 184 58 3 chr9 103160063 103160405 -39111039 - MLT1A1 LTR MaLR -4 361 1 280 339 229 0 chr9 103161341 103161450 -39109994 + L2 LINE L2 3139 3272 0 328 135 0 19 chr9 103162081 103162133 -39109311 - L2 LINE L2 -8 3305 3255 23 68 0 0 chr9 103163379 103163423 -39108021 + AT_rich Low_complexity Low_complexity 1 44 0 187 298 111 41 chr9 103163628 103163799 -39107645 + L2 LINE L2 3130 3312 -1 * 281 162 54 40 chr9 103163792 103163866 -39107578 + MIR SINE MIR 181 255 -7 186 71 0 0 chr9 103164751 103164779 -39106665 + (CA)n Simple_repeat Simple_repeat 1 28 0 22692 49 0 0 chr9 103165103 103168764 -39102680 + L1PA5 LINE L1 2490 6152 -2 1670 155 29 11 chr9 103168827 103168993 -39102451 - AluSx SINE Alu 0 307 132 1746 123 0 8 chr9 103168993 103169246 -39102198 - AluSx SINE Alu -11 301 51 1670 155 29 11 chr9 103169246 103169381 -39102063 - AluSx SINE Alu -175 132 1 21 0 0 0 chr9 103169454 103169475 -39101969 + AT_rich Low_complexity Low_complexity 1 21 0 283 260 62 26 chr9 103170620 103170812 -39100632 - L1MC5 LINE L1 -36 7925 7727 319 136 0 0 chr9 103170815 103170873 -39100571 + Tigger2 DNA MER2_type 4 49 -2669 2741 137 21 0 chr9 103170878 103171308 -39100136 + Tigger2 DNA MER2_type 2280 2718 0 657 269 26 42 chr9 103171438 103171747 -39099697 - L1MC5 LINE L1 -385 7576 7273 374 201 66 27 chr9 103171843 103172002 -39099442 - L1MC5 LINE L1 -728 7233 7087 274 130 37 0 chr9 103174521 103174575 -39096869 + L1MA9 LINE L1 6026 6081 -231 386 129 194 0 chr9 103174577 103174670 -39096774 + L1MA9 LINE L1 6180 6290 -22 2334 90 0 3 chr9 103174693 103174993 -39096451 + AluSq SINE Alu 1 299 -14 289 282 0 73 chr9 103175014 103175124 -39096320 + MIR SINE MIR 161 262 0 4382 179 23 28 chr9 103175408 103177212 -39094232 + L1MA9 LINE L1 4483 6274 -38 2316 110 26 26 chr9 103177245 103177636 -39093808 + L1PA4 LINE L1 5764 6154 -1 29 0 0 0 chr9 103177721 103177750 -39093694 + AT_rich Low_complexity Low_complexity 1 29 0 244 316 119 16 chr9 103178069 103178262 -39093182 + Charlie8 DNA MER1_type 1 213 -2204 231 259 0 0 chr9 103178779 103178837 -39092607 + L1ME LINE L1 5528 5585 -599 1828 112 52 4 chr9 103178908 103179224 -39092220 + AluSx SINE Alu 1 329 0 228 283 50 0 chr9 103179238 103179337 -39092107 + L1ME LINE L1 5716 5819 -302 2094 225 74 15 chr9 103179635 103180742 -39090702 - L1MD2 LINE L1 -10 6154 4942 1616 182 14 24 chr9 103180742 103181039 -39090405 - AluJo SINE Alu -16 296 3 2094 225 74 15 chr9 103181039 103181212 -39090232 - L1MD2 LINE L1 -1222 4942 4781 219 240 144 58 chr9 103181513 103181617 -39089827 + MIR SINE MIR 88 200 -62 2136 123 10 3 chr9 103182188 103182498 -39088946 + AluSx SINE Alu 1 312 0 2135 109 28 0 chr9 103183842 103184127 -39087317 + AluSx SINE Alu 1 293 -19 348 24 0 0 chr9 103184158 103184199 -39087245 + (TG)n Simple_repeat Simple_repeat 1 41 0 202 239 22 0 chr9 103185017 103185063 -39086381 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 250 306 81 9 chr9 103185275 103185386 -39086058 + L2 LINE L2 3166 3284 -29 199 370 151 46 chr9 103185363 103185582 -39085862 - L2 LINE L2 -26 3246 3005 * 640 145 264 42 chr9 103187034 103187227 -39084217 + MER46A DNA MER2_type 1 236 0 224 291 17 103 chr9 103188630 103188747 -39082697 + L3b LINE CR1 1276 1382 -201 236 30 30 0 chr9 103188928 103188961 -39082483 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2322 62 0 0 chr9 103188967 103189242 -39082202 - AluY SINE Alu -36 275 1 1860 146 6 50 chr9 103189242 103189564 -39081880 - AluJo SINE Alu -3 309 1 569 221 170 43 chr9 103189753 103190006 -39081438 - L2 LINE L2 -2 3311 3027 364 290 76 7 chr9 103190069 103190214 -39081230 - L2 LINE L2 -453 2861 2707 395 213 238 6 chr9 103190930 103191090 -39080354 + MIR SINE MIR 66 262 0 453 310 89 53 chr9 103191304 103191803 -39079641 + L2 LINE L2 2734 3240 -32 832 293 63 13 chr9 103191926 103192305 -39079139 + LTR16A LTR ERVL 52 449 -1 299 294 201 45 chr9 103192306 103193102 -39078342 - L2 LINE L2 -825 2489 1570 1125 252 197 6 chr9 103195798 103196337 -39075107 + LTR41 LTR ERVL 3 644 -129 978 209 139 102 chr9 103196442 103196983 -39074461 - L1M4 LINE L1 -1548 4598 4038 354 365 1 18 chr9 103198064 103198289 -39073155 + L2 LINE L2 3110 3313 0 21 0 0 0 chr9 103199000 103199021 -39072423 + AT_rich Low_complexity Low_complexity 1 21 0 449 293 35 20 chr9 103199369 103199567 -39071877 - L1M4 LINE L1 -2213 3933 3733 752 202 0 0 chr9 103200178 103200302 -39071142 - FLAM_A SINE Alu -9 124 1 1739 105 0 16 chr9 103200339 103200586 -39070858 + AluSq SINE Alu 1 243 -70 21893 40 0 0 chr9 103200774 103204253 -39067191 + L1PA5 LINE L1 2670 6154 0 184 298 191 36 chr9 103205004 103205088 -39066356 + MIR SINE MIR 81 177 -85 500 263 164 6 chr9 103205410 103205581 -39065863 + MIR SINE MIR 57 254 -8 1976 158 49 35 chr9 103205798 103206350 -39065094 - MLT2A2 LTR ERVL 0 554 1 267 207 184 0 chr9 103206839 103206926 -39064518 + MIR SINE MIR 52 154 -108 2493 178 18 22 chr9 103207061 103207568 -39063876 + MLT1D LTR MaLR 1 505 0 24 0 0 0 chr9 103208111 103208135 -39063309 + AT_rich Low_complexity Low_complexity 1 24 0 240 273 0 0 chr9 103208149 103208204 -39063240 - MIR3 SINE MIR -3 205 151 299 279 29 10 chr9 103209006 103209110 -39062334 + (CA)n Simple_repeat Simple_repeat 2 107 0 23 97 0 0 chr9 103209727 103209799 -39061645 + AT_rich Low_complexity Low_complexity 1 72 0 298 296 9 35 chr9 103209800 103209915 -39061529 + GA-rich Low_complexity Low_complexity 1 112 0 300 245 93 0 chr9 103210116 103210255 -39061189 - L1ME4a LINE L1 -248 5873 5722 1695 159 0 89 chr9 103210820 103211146 -39060298 + AluJb SINE Alu 1 297 -15 518 323 32 16 chr9 103211156 103211342 -39060102 + L3 LINE CR1 1388 1576 -1 315 49 0 0 chr9 103211959 103212000 -39059444 + MADE1 DNA Mariner 3 43 -37 2224 105 6 20 chr9 103212021 103212365 -39059079 - L1PA10 LINE L1 0 6168 5830 274 122 0 0 chr9 103212369 103212410 -39059034 + MADE1 DNA Mariner 40 80 0 308 289 154 15 chr9 103212507 103212780 -39058664 + L1ME4a LINE L1 5586 5896 -225 872 255 82 4 chr9 103212849 103213080 -39058364 - MIR SINE MIR 0 262 14 190 175 18 18 chr9 103213160 103213217 -39058227 + (TA)n Simple_repeat Simple_repeat 2 58 0 207 269 50 76 chr9 103213630 103213657 -39057787 - MIR3 SINE MIR -7 201 175 889 198 89 5 chr9 103213657 103213859 -39057585 + MER20 DNA MER1_type 1 219 0 207 269 50 76 chr9 103213859 103213950 -39057494 - MIR3 SINE MIR -33 175 86 505 317 28 52 chr9 103214024 103214273 -39057171 + MIR SINE MIR 14 256 -6 194 296 37 12 chr9 103214634 103214715 -39056729 - MIR SINE MIR 0 262 180 439 92 53 13 chr9 103214726 103214802 -39056642 - L1MA10 LINE L1 -10 6324 6246 1369 119 9 0 chr9 103214802 103215020 -39056424 + L1MB1 LINE L1 5873 6092 -76 1860 193 39 34 chr9 103215054 103215494 -39055950 + MLT1D LTR MaLR 2 443 -62 186 229 0 0 chr9 103215761 103215796 -39055648 - L2 LINE L2 -1 3271 3237 271 240 48 19 chr9 103216102 103216206 -39055238 + LTR67 LTR ERVL 428 534 -23 1213 183 13 15 chr9 103216256 103216593 -39054851 - MER52C LTR ERV1 -850 428 76 * 3290 154 51 57 chr9 103216533 103217542 -39053902 + MER52C LTR ERV1 395 1278 0 311 319 212 0 chr9 103217924 103218216 -39053228 + L2 LINE L2 2278 2631 -683 357 299 85 25 chr9 103218227 103218428 -39053016 - MLT1K LTR MaLR -8 580 368 501 343 27 43 chr9 103218811 103219182 -39052262 + L2 LINE L2 2646 3006 -266 302 357 9 36 chr9 103219233 103219345 -39052099 + L2 LINE L2 3122 3230 -42 385 226 153 8 chr9 103220211 103220335 -39051109 - L1ME4a LINE L1 -6 6115 5974 4189 31 52 0 chr9 103221290 103221810 -39049634 + L1PA4 LINE L1 5609 6155 0 25 0 0 0 chr9 103222293 103222318 -39049126 + AT_rich Low_complexity Low_complexity 1 25 0 806 346 83 19 chr9 103223381 103223826 -39047618 + L1ME1 LINE L1 5385 5870 -296 2145 329 108 29 chr9 103223826 103225418 -39046026 + L2 LINE L2 1072 2789 -525 320 263 193 9 chr9 103225473 103225587 -39045857 - L2 LINE L2 -2 3311 3177 351 336 114 13 chr9 103225677 103225826 -39045618 + L2 LINE L2 3103 3266 -6 255 31 0 0 chr9 103225858 103225890 -39045554 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 29162 107 8 14 chr9 103225892 103228412 -39043032 - L1PA7 LINE L1 -20 6449 3915 2406 103 0 0 chr9 103228412 103228723 -39042721 - AluY SINE Alu 0 311 1 29162 107 8 14 chr9 103228723 103232489 -39038955 - L1PA7 LINE L1 -2554 3915 5 27 87 0 0 chr9 103232540 103232609 -39038835 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr9 103233634 103233655 -39037789 + AT_rich Low_complexity Low_complexity 1 21 0 196 296 133 10 chr9 103233740 103233838 -39037606 + MIR SINE MIR 5 114 -148 201 121 0 0 chr9 103233970 103234003 -39037441 + (CAA)n Simple_repeat Simple_repeat 3 35 0 327 248 8 72 chr9 103234068 103234193 -39037251 - L1MC4 LINE L1 -1318 6724 6608 234 119 51 17 chr9 103234193 103234255 -39037189 + (TTATA)n Simple_repeat Simple_repeat 1 64 0 331 355 22 11 chr9 103234539 103234722 -39036722 + HAL1b LINE L1 384 568 -780 1558 191 40 79 chr9 103234723 103235204 -39036240 - MER101 LTR ERV1 0 474 13 244 0 0 0 chr9 103235401 103235430 -39036014 - L1P4 LINE L1 -348 5815 5787 1581 55 5 0 chr9 103235431 103235712 -39035732 + L1PA5 LINE L1 5952 6233 0 222 118 0 0 chr9 103235947 103235981 -39035463 + (CACG)n Simple_repeat Simple_repeat 2 35 0 211 232 36 0 chr9 103237061 103237117 -39034327 - L2 LINE L2 0 3313 3256 31 26 0 0 chr9 103237513 103237551 -39033893 + AT_rich Low_complexity Low_complexity 1 38 0 317 320 48 8 chr9 103237570 103237695 -39033749 + L1ME4a LINE L1 5004 5133 -1013 350 249 104 25 chr9 103238143 103238344 -39033100 + L1ME4a LINE L1 5678 5894 -227 2163 90 30 17 chr9 103238735 103239036 -39032408 - AluSx SINE Alu -7 305 1 2315 193 98 36 chr9 103239208 103239965 -39031479 + LTR1B LTR ERV1 1 785 0 207 321 79 50 chr9 103240001 103240141 -39031303 - MIR3 SINE MIR -62 146 3 1616 179 148 33 chr9 103240326 103240745 -39030699 + MLT1C LTR MaLR 1 467 0 280 219 96 0 chr9 103241162 103241235 -39030209 - LTR33A LTR ERVL 0 523 444 229 146 83 0 chr9 103241495 103241543 -39029901 - MLT2E LTR ERVL -542 86 35 1485 165 112 0 chr9 103242192 103242459 -39028985 - AluSx SINE Alu -13 299 3 5672 29 1 0 chr9 103242517 103243183 -39028261 - L1PA4 LINE L1 -4 6151 5485 190 333 111 0 chr9 103243199 103243280 -39028164 + L2 LINE L2 3215 3304 -9 342 198 23 47 chr9 103243289 103243375 -39028069 - MER5A DNA MER1_type -105 84 1 1190 292 69 18 chr9 103243484 103244314 -39027130 + L1ME4a LINE L1 5084 5955 -215 3312 68 0 33 chr9 103246431 103246889 -39024555 + MLT2A1 LTR ERVL 1 443 -1 23 0 0 0 chr9 103247827 103247850 -39023594 + AT_rich Low_complexity Low_complexity 1 23 0 2179 127 0 6 chr9 103248119 103248433 -39023011 + AluSx SINE Alu 1 312 0 1338 77 21 10 chr9 103248926 103249120 -39022324 - L1PB1 LINE L1 0 6151 5956 1902 225 50 59 chr9 103249367 103249926 -39021518 - MLT2B3 LTR ERVL 0 554 1 319 311 19 0 chr9 103250210 103250313 -39021131 + Charlie7 DNA MER1_type 1 105 -2507 25 90 0 0 chr9 103250319 103250386 -39021058 + AT_rich Low_complexity Low_complexity 1 67 0 508 322 128 35 chr9 103250467 103251088 -39020356 + L2 LINE L2 2587 3272 0 4705 116 39 6 chr9 103251956 103252926 -39018518 + L1PA14 LINE L1 5031 6028 -133 273 25 0 25 chr9 103252923 103252963 -39018481 + L1PA15 LINE L1 6115 6153 -12 * 803 173 29 35 chr9 103253163 103253336 -39018108 - L1MB4 LINE L1 -6 6174 6003 207 404 19 10 chr9 103254220 103254324 -39017120 + L2 LINE L2 2543 2647 -667 689 309 153 20 chr9 103254812 103255203 -39016241 + L2 LINE L2 2871 3313 0 320 227 142 14 chr9 103255208 103255349 -39016095 + L1ME4a LINE L1 5945 6103 -18 2286 118 0 0 chr9 103255989 103256286 -39015158 - AluSx SINE Alu -13 299 3 705 296 141 63 chr9 103256387 103257430 -39014014 - L2 LINE L2 -1 3312 2188 569 226 21 8 chr9 103257430 103257669 -39013775 + L1MC4 LINE L1 7716 8042 0 371 311 156 46 chr9 103257721 103257959 -39013485 - L2 LINE L2 -1208 2106 1843 415 294 91 40 chr9 103258224 103258500 -39012944 + LTR16A1 LTR ERVL 168 457 0 23 68 0 0 chr9 103258867 103258911 -39012533 + AT_rich Low_complexity Low_complexity 1 44 0 229 336 129 18 chr9 103259126 103259343 -39012101 + L2 LINE L2 2566 2806 -508 194 300 0 0 chr9 103259349 103259399 -39012045 + L3 LINE CR1 1502 1551 -26 1582 194 51 15 chr9 103259399 103259735 -39011709 - MLT1D LTR MaLR 0 505 158 486 320 120 17 chr9 103259693 103259993 -39011451 + LTR33 LTR ERVL 47 377 -144 * 231 283 65 0 chr9 103260118 103260210 -39011234 + LTR33 LTR ERVL 416 513 -8 511 366 34 11 chr9 103260258 103260613 -39010831 - L2 LINE L2 -602 2712 2350 1730 181 30 30 chr9 103261490 103261855 -39009589 - MLT1A1 LTR MaLR 0 365 1 5495 133 3 11 chr9 103261881 103262751 -39008693 - L1PA16 LINE L1 -9 6157 5295 2265 182 11 25 chr9 103262744 103262951 -39008493 - L1PA16 LINE L1 -1059 5087 4878 * 1956 162 3 0 chr9 103262951 103263260 -39008184 - AluSx SINE Alu -2 310 1 2265 182 11 25 chr9 103263260 103263524 -39007920 - L1PA16 LINE L1 -1268 4878 4623 2556 152 31 17 chr9 103263895 103264375 -39007069 - L1MB3 LINE L1 -10 6173 5687 509 336 33 54 chr9 103264468 103264709 -39006735 - LTR16A1 LTR ERVL -26 431 196 236 133 0 22 chr9 103264884 103264929 -39006515 - L1 LINE L1 -1244 4902 4859 1809 229 52 61 chr9 103265100 103265659 -39005785 + MLT2B3 LTR ERVL 1 554 0 264 259 58 72 chr9 103266841 103266980 -39004464 - MIR SINE MIR -6 256 120 250 324 81 36 chr9 103268648 103268870 -39002574 + MLT1L LTR MaLR 383 614 -1 403 260 27 60 chr9 103268889 103269039 -39002405 + L2 LINE L2 3160 3304 -9 4727 221 58 51 chr9 103269107 103271161 -39000283 + L1MD3 LINE L1 3791 5867 -375 622 213 175 0 chr9 103271166 103271349 -39000095 + L1ME1 LINE L1 5931 6145 -21 20138 51 0 2 chr9 103272142 103275492 -38995952 + L1PA5 LINE L1 2770 6151 -3 21 0 0 0 chr9 103275868 103275889 -38995555 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr9 103275919 103275964 -38995480 + AT_rich Low_complexity Low_complexity 1 45 0 189 171 0 0 chr9 103276024 103276059 -38995385 + T-rich Low_complexity Low_complexity 1 35 0 43 0 0 0 chr9 103276174 103276217 -38995227 + AT_rich Low_complexity Low_complexity 1 43 0 286 254 0 0 chr9 103276338 103276355 -38995089 + MER3 DNA MER1_type 32 48 -161 932 235 25 0 chr9 103276355 103276551 -38994893 - MER3 DNA MER1_type -1 208 8 205 355 32 20 chr9 103276848 103276970 -38994474 - MIR3 SINE MIR -24 184 89 192 77 0 0 chr9 103277698 103277724 -38993720 + (TG)n Simple_repeat Simple_repeat 1 26 0 438 276 6 69 chr9 103277785 103277959 -38993485 - MLT1K LTR MaLR 0 588 426 255 221 118 0 chr9 103278134 103278202 -38993242 + Tigger4(Zombi) DNA MER2_type 6 81 -2650 2171 64 0 35 chr9 103278206 103278489 -38992955 - AluSc SINE Alu -36 273 1 366 311 42 8 chr9 103278652 103278771 -38992673 - MLT1K LTR MaLR -389 199 77 204 125 0 0 chr9 103278827 103278859 -38992585 + (TG)n Simple_repeat Simple_repeat 2 33 0 181 337 31 61 chr9 103280399 103280497 -38990947 - L3 LINE CR1 -961 616 522 434 313 102 27 chr9 103280912 103281168 -38990276 - L3 LINE CR1 -1019 558 284 189 0 0 0 chr9 103281737 103281758 -38989686 + (A)n Simple_repeat Simple_repeat 1 21 0 30 0 0 0 chr9 103281784 103281814 -38989630 + AT_rich Low_complexity Low_complexity 1 30 0 2306 94 0 10 chr9 103281983 103282291 -38989153 - AluSx SINE Alu -4 308 4 21 0 0 0 chr9 103282492 103282513 -38988931 + AT_rich Low_complexity Low_complexity 1 21 0 968 277 73 28 chr9 103282683 103283078 -38988366 + LTR16A LTR ERVL 23 457 0 910 328 58 10 chr9 103283325 103283721 -38987723 + HERV16 LTR ERVL 297 711 -4285 184 229 0 0 chr9 103284021 103284056 -38987388 + MIR SINE MIR 154 188 -74 30 0 0 0 chr9 103284182 103284212 -38987232 + AT_rich Low_complexity Low_complexity 1 30 0 982 188 45 31 chr9 103284217 103284441 -38987003 - AluJo SINE Alu -9 303 77 391 127 0 0 chr9 103285355 103285410 -38986034 - MER20 DNA MER1_type -1 218 164 187 315 164 41 chr9 103285560 103285706 -38985738 + MIR3 SINE MIR 18 181 -27 283 341 12 0 chr9 103285715 103285797 -38985647 + L2 LINE L2 3190 3272 0 253 356 0 0 chr9 103285846 103285936 -38985508 + L2 LINE L2 3178 3267 -5 327 330 63 15 chr9 103286284 103286466 -38984978 + MIR SINE MIR 18 202 -60 26 30 0 0 chr9 103286585 103286618 -38984826 + AT_rich Low_complexity Low_complexity 1 33 0 725 265 111 8 chr9 103286878 103287112 -38984332 + MIR SINE MIR 2 259 -3 210 333 13 0 chr9 103287694 103287769 -38983675 + L2 LINE L2 2680 2755 -559 437 188 0 0 chr9 103287800 103287880 -38983564 - AluJ/FRAM SINE Alu -16 296 217 402 57 0 0 chr9 103287958 103288011 -38983433 + (TC)n Simple_repeat Simple_repeat 2 54 0 203 0 0 36 chr9 103288216 103288244 -38983200 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 414 349 94 32 chr9 103288378 103288782 -38982662 - L2 LINE L2 -733 2581 2153 867 281 122 45 chr9 103289227 103289669 -38981775 + L2 LINE L2 2833 3308 -5 1097 313 29 11 chr9 103290589 103291033 -38980411 - L1MCc LINE L1 -5948 475 24 651 332 124 10 chr9 103291150 103291536 -38979908 - L1MEd LINE L1 -5279 840 411 2228 89 3 0 chr9 103291855 103292157 -38979287 - L1PA10 LINE L1 -5 6163 5861 5070 139 13 48 chr9 103292214 103292390 -38979054 - L1MA8 LINE L1 0 6291 6110 1679 206 0 16 chr9 103292390 103292696 -38978748 - AluJo SINE Alu -11 301 1 5070 139 13 48 chr9 103292696 103293488 -38977956 - L1MA8 LINE L1 -181 6110 5357 14828 92 16 11 chr9 103293489 103295561 -38975883 + MER57A-int LTR ERV1 5063 7144 -393 747 121 35 0 chr9 103295561 103295677 -38975767 + LTR54B LTR ERV1 1 120 -378 1820 92 18 15 chr9 103295677 103295950 -38975494 + MER57A-int LTR ERV1 7264 7537 0 2231 144 55 0 chr9 103295950 103296332 -38975112 + MER57A LTR ERV1 1 403 0 776 193 25 19 chr9 103296546 103296707 -38974737 - MER105 DNA DNA -42 162 1 238 361 18 41 chr9 103297352 103297521 -38973923 + L2 LINE L2 2688 2852 -462 270 316 41 10 chr9 103297570 103297668 -38973776 + L2 LINE L2 2932 3032 -240 629 202 46 46 chr9 103297696 103297869 -38973575 - MER5B DNA MER1_type -1 177 5 631 248 176 0 chr9 103297879 103298089 -38973355 + MIR SINE MIR 15 261 -1 207 338 0 0 chr9 103298316 103298387 -38973057 + L2 LINE L2 2587 2657 -657 197 230 138 58 chr9 103298500 103298587 -38972857 + L2 LINE L2 3154 3247 -25 205 390 80 0 chr9 103300402 103300502 -38970942 - MIR SINE MIR -63 145 38 402 336 25 49 chr9 103300837 103301058 -38970386 + MIR SINE MIR 3 216 -46 296 295 98 25 chr9 103302379 103302501 -38968943 + L2 LINE L2 3183 3313 0 512 267 134 17 chr9 103303611 103303783 -38967661 - MIR SINE MIR -7 255 64 532 254 85 6 chr9 103305183 103305348 -38966096 + MIR SINE MIR 82 259 -3 256 235 183 35 chr9 103305360 103305475 -38965969 - MIR SINE MIR -125 137 6 197 293 50 50 chr9 103306068 103306167 -38965277 - MIR SINE MIR -1 261 163 * 261 331 7 65 chr9 103306134 103306288 -38965156 - L2 LINE L2 0 3313 3169 302 305 63 0 chr9 103306328 103306423 -38965021 - MIR SINE MIR -114 148 48 2086 120 13 0 chr9 103306863 103307163 -38964281 + AluSx SINE Alu 1 304 -8 2458 103 0 0 chr9 103307177 103307488 -38963956 + AluSx SINE Alu 1 311 -1 510 287 48 72 chr9 103307594 103307925 -38963519 + L2 LINE L2 2991 3313 0 303 265 70 31 chr9 103307973 103308137 -38963307 - L1ME3A LINE L1 -279 5887 5721 24 39 0 0 chr9 103308410 103308436 -38963008 + GC_rich Low_complexity Low_complexity 1 26 0 537 101 0 0 chr9 103308541 103308610 -38962834 - Alu SINE Alu -232 77 9 302 317 193 15 chr9 103309315 103309517 -38961927 + MIR SINE MIR 11 248 -14 377 185 12 12 chr9 103310106 103310187 -38961257 + MIR SINE MIR 100 180 -82 8440 40 4 0 chr9 103310948 103312656 -38958788 - L1PA5 LINE L1 -151 6003 4289 4844 15 3 0 chr9 103312656 103313244 -38958200 + L1PA3 LINE L1 5304 5893 -262 420 243 78 0 chr9 103313394 103313497 -38957947 + MER63A DNA MER1_type 100 210 0 26 0 0 0 chr9 103313514 103313540 -38957904 + AT_rich Low_complexity Low_complexity 1 26 0 554 150 62 0 chr9 103313632 103313745 -38957699 - L1MA4 LINE L1 -5 6295 6176 182 191 21 0 chr9 103313804 103313851 -38957593 + (TA)n Simple_repeat Simple_repeat 1 48 0 548 254 0 0 chr9 103314618 103314740 -38956704 - MER45A DNA AcHobo 0 178 57 2385 93 0 13 chr9 103314743 103315097 -38956347 - AluSc SINE Alu 0 350 1 330 242 0 0 chr9 103315104 103315166 -38956278 - MER45A DNA AcHobo -116 62 1 287 335 81 81 chr9 103316155 103316576 -38954868 + L2 LINE L2 2830 3250 -22 413 176 14 0 chr9 103316588 103316662 -38954782 + LTR32 LTR ERVL 15 89 -382 276 105 228 0 chr9 103316645 103316702 -38954742 + LTR32 LTR ERVL 19 88 -383 * 983 228 31 0 chr9 103316717 103316941 -38954503 + LTR32 LTR ERVL 232 462 -9 4004 271 25 25 chr9 103316949 103318195 -38953249 + HERVL32 LTR ERVL 1 1246 -2172 585 160 61 23 chr9 103318818 103318949 -38952495 + LTR32 LTR ERVL 331 466 -5 1733 188 67 21 chr9 103319062 103319597 -38951847 + MLT2A2 LTR ERVL 1 554 0 258 231 128 43 chr9 103320516 103320633 -38950811 - MIR SINE MIR -1 261 135 248 372 21 0 chr9 103320685 103320779 -38950665 - MIR SINE MIR -63 145 50 312 282 115 40 chr9 103320803 103321004 -38950440 - MIR SINE MIR 0 262 41 408 329 47 39 chr9 103321307 103321562 -38949882 + L2 LINE L2 2826 3082 -231 819 191 60 30 chr9 103321681 103321880 -38949564 + L2 LINE L2 3107 3311 -2 633 224 53 12 chr9 103322209 103322379 -38949065 - MER97a DNA MER1_type? -715 179 3 1103 249 114 48 chr9 103322612 103323150 -38948294 - MLT1F1 LTR MaLR -7 586 1 257 290 65 27 chr9 103323408 103323594 -38947850 - HAL1b LINE L1 -731 617 425 666 298 149 0 chr9 103323738 103324040 -38947404 + LTR16C LTR ERVL 135 481 -10 1571 163 3 62 chr9 103324172 103324306 -38947138 - L1PA13 LINE L1 -1 6162 6022 2064 113 0 53 chr9 103324306 103324626 -38946818 - AluSx SINE Alu -9 303 1 1571 163 3 62 chr9 103324626 103324848 -38946596 - L1PA13 LINE L1 -141 6022 5827 10812 98 10 6 chr9 103325226 103326354 -38945090 + L1P LINE L1 2490 3629 -2517 2406 103 0 0 chr9 103326354 103326665 -38944779 + AluY SINE Alu 1 311 0 10812 98 10 6 chr9 103326665 103327221 -38944223 + L1P LINE L1 3629 4181 -1965 2105 115 65 14 chr9 103327509 103327865 -38943579 + THE1C LTR MaLR 2 375 0 3055 102 86 0 chr9 103327865 103328355 -38943089 + THE1C-int LTR MaLR 1 532 -1048 21932 41 0 0 chr9 103328531 103332015 -38939429 + L1PA5 LINE L1 2670 6152 -2 713 108 0 0 chr9 103332169 103332271 -38939173 - AluY SINE Alu -10 301 200 22 0 0 0 chr9 103332502 103332524 -38938920 + AT_rich Low_complexity Low_complexity 1 22 0 1449 192 113 59 chr9 103332588 103333031 -38938413 + MLT1C LTR MaLR 1 467 0 236 296 56 39 chr9 103333119 103333352 -38938092 + L1ME LINE L1 5658 5894 -227 396 0 0 0 chr9 103333574 103333618 -38937826 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 528 282 67 15 chr9 103333618 103333813 -38937631 + MIR SINE MIR 58 262 0 32 57 0 0 chr9 103334473 103334526 -38936918 + AT_rich Low_complexity Low_complexity 1 53 0 341 200 84 0 chr9 103334526 103334621 -38936823 - L1MA9 LINE L1 -37 6275 6173 2070 147 3 13 chr9 103335695 103336008 -38935436 - AluSx SINE Alu 0 312 3 707 320 28 3 chr9 103336361 103336645 -38934799 + LTR16A LTR ERVL 85 375 -75 794 194 104 9 chr9 103336783 103336994 -38934450 + L1M4 LINE L1 3859 4089 -2057 186 306 16 0 chr9 103338370 103338432 -38933012 + MIR SINE MIR 126 188 -74 209 139 23 0 chr9 103338485 103338528 -38932916 + (CAT)n Simple_repeat Simple_repeat 2 45 0 693 110 0 0 chr9 103339500 103339600 -38931844 - AluSg/x SINE Alu -10 300 201 911 158 7 0 chr9 103339602 103339748 -38931696 + AluSg/x SINE Alu 155 301 -11 524 303 128 5 chr9 103339990 103340178 -38931266 - MIR SINE MIR -39 223 13 21 0 0 0 chr9 103340462 103340483 -38930961 + AT_rich Low_complexity Low_complexity 1 21 0 217 372 97 7 chr9 103341085 103341230 -38930214 - L3b LINE CR1 -157 1426 1269 1706 267 119 19 chr9 103341376 103341413 -38930031 + HAL1 LINE L1 2 34 -2473 1947 92 85 21 chr9 103341413 103341695 -38929749 + AluSg1 SINE Alu 1 300 -9 1706 267 119 19 chr9 103341695 103342304 -38929140 + HAL1 LINE L1 34 713 -1794 1445 202 99 3 chr9 103342364 103342646 -38928798 - AluJb SINE Alu -3 309 1 297 269 32 11 chr9 103342646 103342739 -38928705 + HAL1 LINE L1 707 801 -1706 1171 254 60 81 chr9 103342769 103343029 -38928415 + HAL1 LINE L1 1247 1511 -996 2289 92 3 0 chr9 103343029 103343321 -38928123 + AluSg SINE Alu 1 293 -17 1171 254 60 81 chr9 103343321 103343749 -38927695 + HAL1 LINE L1 1511 1920 -587 974 159 14 0 chr9 103344189 103344358 -38927086 - AluSg/x SINE Alu 0 305 135 198 0 0 0 chr9 103344999 103345021 -38926423 + (CCCCCT)n Simple_repeat Simple_repeat 2 23 0 846 56 0 0 chr9 103345023 103345131 -38926313 + (TTC)n Simple_repeat Simple_repeat 3 110 0 856 273 105 0 chr9 103345383 103345669 -38925775 + LTR16A LTR ERVL 105 420 -30 373 300 114 7 chr9 103346834 103346964 -38924480 + L2 LINE L2 2666 2810 -504 1088 166 11 0 chr9 103346964 103347151 -38924293 - MER5A DNA MER1_type 0 189 1 489 286 165 30 chr9 103347154 103347549 -38923895 + L2 LINE L2 2805 3252 -61 301 291 48 29 chr9 103348780 103348883 -38922561 + MIR3 SINE MIR 70 174 -34 1130 246 68 45 chr9 103350670 103351110 -38920334 + MLT1J2 LTR MaLR 1 450 0 237 119 0 0 chr9 103351575 103351617 -38919827 + (TC)n Simple_repeat Simple_repeat 1 42 0 244 287 187 52 chr9 103351819 103352220 -38919224 + L2 LINE L2 2299 2753 -561 553 262 43 92 chr9 103352292 103352639 -38918805 - L2 LINE L2 0 3313 2984 2544 146 71 14 chr9 103352802 103353297 -38918147 + L1MC3 LINE L1 6869 7391 -394 380 229 14 0 chr9 103353405 103353475 -38917969 - MER5A DNA MER1_type -99 90 20 629 240 17 45 chr9 103353503 103353682 -38917762 + MER5B DNA MER1_type 1 174 -4 341 243 131 28 chr9 103353825 103353932 -38917512 + MIR SINE MIR 27 144 -64 293 247 13 0 chr9 103355021 103355098 -38916346 + MIR SINE MIR 183 260 -2 684 330 30 9 chr9 103355196 103355429 -38916015 - MIR SINE MIR -17 245 8 237 300 88 0 chr9 103356132 103356212 -38915232 + MIR SINE MIR 52 138 -124 5141 169 44 13 chr9 103356334 103357397 -38914047 + L1MC3 LINE L1 6686 7781 -4 576 260 27 54 chr9 103358115 103358150 -38913294 + MLT1G LTR MaLR 10 44 -546 1533 199 79 22 chr9 103358150 103358553 -38912891 + MSTC LTR MaLR 1 426 -2 576 260 27 54 chr9 103358553 103358740 -38912704 + MLT1G LTR MaLR 44 226 -364 297 96 27 27 chr9 103358792 103358865 -38912579 + (TTCA)n Simple_repeat Simple_repeat 2 74 0 529 246 28 28 chr9 103358875 103359017 -38912427 + MLT1F1 LTR MaLR 420 561 -6 741 332 115 19 chr9 103359209 103359634 -38911810 - L2 LINE L2 -5 3308 2843 317 292 158 19 chr9 103359728 103359937 -38911507 + MLT1J1 LTR MaLR 80 317 -129 375 23 0 0 chr9 103361019 103361063 -38910381 + (CA)n Simple_repeat Simple_repeat 2 45 0 230 319 86 61 chr9 103361412 103361575 -38909869 - L2 LINE L2 -1 3271 3105 351 78 0 0 chr9 103361611 103361662 -38909782 - MADE1 DNA Mariner -1 79 29 600 303 21 36 chr9 103362163 103362493 -38908951 - MARNA DNA Mariner -196 390 66 22 80 0 0 chr9 103362546 103362596 -38908848 + AT_rich Low_complexity Low_complexity 1 50 0 5802 137 10 7 chr9 103362607 103363665 -38907779 - L1MA8 LINE L1 -6 6285 5224 598 336 35 16 chr9 103364202 103364458 -38906986 + MIR SINE MIR 2 262 0 461 291 137 34 chr9 103365422 103365656 -38905788 + MIR SINE MIR 3 260 -2 194 341 24 0 chr9 103366025 103366107 -38905337 - L2 LINE L2 0 3272 3189 386 285 29 15 chr9 103367055 103367192 -38904252 + MIR SINE MIR 112 250 -12 180 77 0 0 chr9 103368467 103368493 -38902951 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 197 363 137 0 chr9 103368536 103368638 -38902806 + L3 LINE CR1 245 360 -1217 2158 119 0 7 chr9 103368992 103369311 -38902133 - AluSx SINE Alu 0 312 1 368 302 88 58 chr9 103369767 103370177 -38901267 - L2 LINE L2 -654 2660 2239 442 284 66 49 chr9 103370411 103370654 -38900790 + MLT1H LTR MaLR 74 320 -229 732 203 18 12 chr9 103370775 103370938 -38900506 - MER20 DNA MER1_type -54 165 2 794 300 14 0 chr9 103370998 103371221 -38900223 - MIR SINE MIR -3 259 34 300 313 49 21 chr9 103371269 103371413 -38900031 + L1ME4a LINE L1 5881 6028 -93 192 40 0 0 chr9 103371882 103371907 -38899537 + (GA)n Simple_repeat Simple_repeat 2 26 0 456 51 0 0 chr9 103371907 103371966 -38899478 + (TAG)n Simple_repeat Simple_repeat 1 59 0 2454 75 10 0 chr9 103373064 103373369 -38898075 - AluSx SINE Alu -4 308 1 708 263 142 19 chr9 103373511 103373716 -38897728 + MIR SINE MIR 3 232 -30 664 309 79 46 chr9 103373809 103374327 -38897117 - L1MC/D LINE L1 -1991 5817 5283 1055 100 0 7 chr9 103376092 103376242 -38895202 + MER1B DNA MER1_type 132 280 -59 2417 80 0 13 chr9 103376472 103376785 -38894659 + AluY SINE Alu 3 311 0 596 259 156 5 chr9 103377293 103377517 -38893927 - MIR SINE MIR -4 258 1 215 284 34 11 chr9 103377743 103377831 -38893613 + (TTCA)n Simple_repeat Simple_repeat 2 91 0 264 301 100 29 chr9 103378664 103378832 -38892612 - MIR SINE MIR -62 146 2 1171 208 0 34 chr9 103378980 103379278 -38892166 - L1P5 LINE L1 -796 5350 5063 2702 92 7 12 chr9 103379279 103379704 -38891740 + L1P5 LINE L1 5368 5790 -361 249 108 0 0 chr9 103379706 103379743 -38891701 + (TATG)n Simple_repeat Simple_repeat 3 39 0 272 241 23 0 chr9 103379755 103379842 -38891602 + L1MC4 LINE L1 6615 6703 -1339 * 294 221 47 0 chr9 103379822 103379908 -38891536 - L1MC4 LINE L1 -1339 6703 6614 2368 98 28 3 chr9 103379932 103380288 -38891156 + L1PB1 LINE L1 5783 6147 -4 258 290 70 0 chr9 103381943 103382043 -38889401 + L3 LINE CR1 1339 1445 -132 993 289 82 37 chr9 103382298 103382699 -38888745 - L2 LINE L2 -1 3312 2894 185 333 93 56 chr9 103382803 103382911 -38888533 + L3 LINE CR1 1458 1569 -8 21 0 0 0 chr9 103383270 103383291 -38888153 + AT_rich Low_complexity Low_complexity 1 21 0 2279 130 8 27 chr9 103383298 103383667 -38887777 + THE1B LTR MaLR 3 364 0 559 321 10 20 chr9 103383841 103384037 -38887407 - MIR SINE MIR -67 195 2 337 316 39 12 chr9 103384572 103384718 -38886726 + MIR SINE MIR 25 167 -41 192 297 0 27 chr9 103384806 103384880 -38886564 + L2 LINE L2 3201 3272 0 321 276 79 53 chr9 103384967 103385195 -38886249 + L1ME4a LINE L1 5814 6047 -74 317 269 184 37 chr9 103386208 103386415 -38885029 + MIR SINE MIR 5 238 -24 213 213 0 0 chr9 103386464 103386511 -38884933 + T-rich Low_complexity Low_complexity 1 47 0 849 153 28 23 chr9 103387021 103387197 -38884247 + MER96B DNA MER1_type? 1 177 -240 272 345 30 74 chr9 103387241 103387444 -38884000 + MIR3 SINE MIR 13 206 -2 321 188 16 47 chr9 103387506 103387570 -38883874 - L2 LINE L2 0 3272 3211 236 308 127 54 chr9 103387579 103387800 -38883644 - L2 LINE L2 -167 3105 2869 220 277 96 24 chr9 103387858 103387941 -38883503 + MIR3 SINE MIR 2 90 -118 438 184 131 172 chr9 103388489 103388756 -38882688 - MIR SINE MIR -2 260 5 258 379 46 0 chr9 103389076 103389250 -38882194 + L2 LINE L2 1726 1907 -1407 455 264 102 12 chr9 103389367 103389534 -38881910 + MIR SINE MIR 49 230 -32 198 228 0 140 chr9 103390280 103390337 -38881107 - L2 LINE L2 -32 3240 3192 393 213 13 0 chr9 103390586 103390661 -38880783 - L2 LINE L2 -4 3309 3234 254 281 180 0 chr9 103390808 103390947 -38880497 + L2 LINE L2 2560 2723 -591 314 253 169 39 chr9 103391115 103391269 -38880175 + L2 LINE L2 2922 3095 -177 235 337 32 11 chr9 103391406 103391501 -38879943 + L2 LINE L2 2946 3042 -230 243 175 0 0 chr9 103394270 103394327 -38877117 + (TG)n Simple_repeat Simple_repeat 1 57 0 235 350 0 0 chr9 103396708 103396788 -38874656 + MIR SINE MIR 183 262 0 246 151 97 11 chr9 103397506 103397599 -38873845 + (TTATA)n Simple_repeat Simple_repeat 4 104 0 232 325 114 24 chr9 103398218 103398341 -38873103 + L2 LINE L2 3139 3272 0 419 200 28 65 chr9 103399056 103399174 -38872270 - MLT1F LTR MaLR -356 186 86 250 132 0 171 chr9 103399177 103399253 -38872191 + LTR33 LTR ERVL 459 521 0 2000 156 13 0 chr9 103399819 103400127 -38871317 - AluSx SINE Alu 0 312 1 879 183 111 48 chr9 103400156 103400364 -38871080 - MER58A DNA MER1_type 0 224 4 3104 163 87 30 chr9 103400973 103401861 -38869583 + L1MB1 LINE L1 4571 5605 -563 216 0 0 0 chr9 103401861 103401885 -38869559 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3104 163 87 30 chr9 103401885 103402478 -38868966 + L1MB1 LINE L1 5605 6163 -5 237 297 93 59 chr9 103402578 103402696 -38868748 + MIR SINE MIR 25 146 -62 320 214 71 18 chr9 103404015 103404127 -38867317 + MLT1K LTR MaLR 446 563 -25 223 336 164 0 chr9 103404942 103405162 -38866282 + L2 LINE L2 2804 3059 -213 1037 202 66 101 chr9 103405272 103405649 -38865795 + MLT1A1 LTR MaLR 2 365 0 201 306 0 0 chr9 103405704 103405753 -38865691 + L2 LINE L2 3265 3313 0 402 299 60 54 chr9 103406596 103406780 -38864664 + MIR SINE MIR 34 218 -44 214 255 0 0 chr9 103406809 103406856 -38864588 + L2 LINE L2 3259 3305 -8 310 295 48 72 chr9 103407524 103407731 -38863713 - Charlie8 DNA MER1_type -2215 202 1 275 336 38 0 chr9 103408122 103408253 -38863191 + MIR SINE MIR 127 262 0 29 28 0 0 chr9 103409415 103409451 -38861993 + AT_rich Low_complexity Low_complexity 1 36 0 540 271 73 28 chr9 103410468 103410863 -38860581 - L1MEd LINE L1 -2687 3442 3030 1980 163 99 29 chr9 103410922 103411389 -38860055 - L1MA8 LINE L1 -4 6287 5780 983 282 116 20 chr9 103411429 103412449 -38858995 - L1MEd LINE L1 -4580 1730 561 2710 117 3 8 chr9 103412474 103412858 -38858586 - MLT1B LTR MaLR -8 382 1 491 270 147 21 chr9 103413566 103413873 -38857571 - L1ME4a LINE L1 -296 5856 5512 305 234 89 16 chr9 103413913 103414037 -38857407 - L1ME4a LINE L1 -749 5397 5265 318 251 50 45 chr9 103414233 103414432 -38857012 - L1ME4a LINE L1 -1555 4591 4392 * 596 292 71 12 chr9 103414425 103414846 -38856598 - L1ME4a LINE L1 -2084 4062 3617 6386 91 58 0 chr9 103415009 103416081 -38855363 - L1PA12 LINE L1 -17 6151 5059 22 35 0 0 chr9 103416466 103416495 -38854949 + AT_rich Low_complexity Low_complexity 1 29 0 418 266 98 11 chr9 103416660 103416844 -38854600 - HAL1 LINE L1 -902 1605 1406 442 249 16 110 chr9 103417002 103417247 -38854197 - MLT1D LTR MaLR -283 222 1 247 307 59 20 chr9 103417548 103417649 -38853795 + MIR SINE MIR 102 206 -56 375 73 0 0 chr9 103417968 103418023 -38853421 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 184 278 111 0 chr9 103418502 103418574 -38852870 + L2 LINE L2 2175 2254 -1060 189 0 0 0 chr9 103418767 103418788 -38852656 + (A)n Simple_repeat Simple_repeat 1 21 0 2078 168 21 76 chr9 103419567 103420016 -38851428 + MSTB LTR MaLR 3 375 0 24 0 0 0 chr9 103420173 103420197 -38851247 + AT_rich Low_complexity Low_complexity 1 24 0 1506 199 79 87 chr9 103420518 103421011 -38850433 - MLT1D LTR MaLR -16 489 1 660 163 177 14 chr9 103421179 103421320 -38850124 + MER58A DNA MER1_type 45 208 -16 293 301 44 26 chr9 103421618 103421731 -38849713 - L1ME LINE L1 -5944 126 12 2304 102 10 0 chr9 103421882 103422185 -38849259 - AluSg SINE Alu -4 306 1 326 364 29 12 chr9 103423389 103423562 -38847882 + MIR SINE MIR 34 209 -53 600 291 107 48 chr9 103424747 103425408 -38846036 - L1ME4a LINE L1 -40 6081 5382 5542 122 46 7 chr9 103425587 103426540 -38844904 - L1PA15 LINE L1 -1 6164 5177 22 35 0 0 chr9 103426653 103426682 -38844762 + AT_rich Low_complexity Low_complexity 1 29 0 35 54 0 0 chr9 103426738 103426794 -38844650 + AT_rich Low_complexity Low_complexity 1 56 0 597 347 74 28 chr9 103426919 103427449 -38843995 - L1ME4a LINE L1 -1485 4661 4108 380 298 42 83 chr9 103427480 103427792 -38843652 + L2 LINE L2 2997 3295 -18 437 328 71 81 chr9 103427795 103428132 -38843312 - L1ME4a LINE L1 -2061 4085 3757 2057 133 0 7 chr9 103428132 103428432 -38843012 - AluSx SINE Alu -3 309 12 437 328 71 81 chr9 103428432 103428759 -38842685 - L1ME4a LINE L1 -2389 3757 3428 269 282 73 63 chr9 103428773 103429089 -38842355 - L1ME4a LINE L1 -4 6117 5799 23 0 0 0 chr9 103429287 103429310 -38842134 + AT_rich Low_complexity Low_complexity 1 23 0 30 89 0 0 chr9 103429666 103429745 -38841699 + AT_rich Low_complexity Low_complexity 1 79 0 255 61 0 0 chr9 103430021 103430054 -38841390 + (TA)n Simple_repeat Simple_repeat 2 34 0 439 293 66 12 chr9 103431884 103432051 -38839393 - MER117 DNA MER1_type -3 194 19 788 213 98 0 chr9 103432077 103432116 -38839328 - MER58A DNA MER1_type -2196 224 190 198 0 0 0 chr9 103432116 103432138 -38839306 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 788 213 98 0 chr9 103432138 103432262 -38839182 - MER58A DNA MER1_type -2230 190 45 403 248 9 80 chr9 103432847 103432960 -38838484 + MIR SINE MIR 83 187 -75 536 272 67 22 chr9 103435501 103435681 -38835763 - MIR SINE MIR -43 219 32 633 269 32 51 chr9 103435795 103436011 -38835433 + MIR SINE MIR 29 240 -22 9695 15 0 0 chr9 103436204 103438109 -38833335 - L1HS LINE L1 0 6155 4251 * 15999 24 0 0 chr9 103438108 103440011 -38831433 + L1HS LINE L1 2336 4238 -1908 2195 108 47 36 chr9 103440587 103440947 -38830497 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr9 103440973 103440998 -38830446 + AT_rich Low_complexity Low_complexity 1 25 0 26 93 0 0 chr9 103441185 103441260 -38830184 + AT_rich Low_complexity Low_complexity 1 75 0 1873 116 150 44 chr9 103442866 103443334 -38828110 + pTR5 LTR ERV1 1 2044 -394 230 239 0 0 chr9 103443341 103443387 -38828057 + (TG)n Simple_repeat Simple_repeat 2 47 0 217 312 75 0 chr9 103443417 103443510 -38827934 - L2 LINE L2 0 3313 3214 242 156 89 0 chr9 103443557 103443602 -38827842 + MSTC LTR MaLR 2 50 -378 510 154 95 29 chr9 103443736 103443878 -38827566 + MSTC LTR MaLR 199 425 -3 186 279 162 0 chr9 103443887 103443955 -38827489 - L2 LINE L2 -9 3263 3185 300 242 37 152 chr9 103444195 103444492 -38826952 - L2 LINE L2 -421 2893 2631 288 338 0 0 chr9 103444490 103444558 -38826886 + L2 LINE L2 3228 3295 -18 * 472 339 38 1 chr9 103444918 103445112 -38826332 + MIR SINE MIR 5 204 -58 4915 193 25 10 chr9 103445146 103446351 -38825093 + L1PA16 LINE L1 4254 5472 -694 4365 133 8 18 chr9 103447609 103448317 -38823127 + L1PA16 LINE L1 5457 6157 -9 33 43 0 0 chr9 103448368 103448415 -38823029 + AT_rich Low_complexity Low_complexity 1 47 0 257 258 0 0 chr9 103449408 103449474 -38821970 + MIR SINE MIR 197 262 0 2441 31 0 10 chr9 103449694 103449982 -38821462 - AluY SINE Alu 0 311 27 266 258 93 0 chr9 103452175 103452272 -38819172 - L1 LINE L1 -2433 3713 3608 24 67 0 0 chr9 103452625 103452670 -38818774 + AT_rich Low_complexity Low_complexity 1 45 0 349 82 311 0 chr9 103452675 103452736 -38818708 + MADE1 DNA Mariner 1 80 0 1142 176 10 5 chr9 103452773 103452978 -38818466 - MER6B DNA MER2_type -4 206 1 245 246 0 16 chr9 103453607 103453668 -38817776 + MER6B DNA MER2_type 150 209 -1 265 106 61 0 chr9 103453789 103453855 -38817589 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 361 183 0 0 chr9 103453948 103454008 -38817436 - MER6B DNA MER2_type -1 209 150 338 94 16 0 chr9 103454085 103454149 -38817295 + (TA)n Simple_repeat Simple_repeat 2 66 0 207 0 0 0 chr9 103454153 103454176 -38817268 + (TC)n Simple_repeat Simple_repeat 2 24 0 195 42 0 0 chr9 103454178 103454202 -38817242 + (GA)n Simple_repeat Simple_repeat 2 25 0 788 297 91 12 chr9 103454877 103455583 -38815861 - L1ME3 LINE L1 -306 5856 5087 2606 69 3 14 chr9 103455959 103456319 -38815125 + L1PA7 LINE L1 5799 6154 0 1592 138 126 6 chr9 103456763 103457104 -38814340 + L1MA8 LINE L1 5909 6290 -1 21 36 0 0 chr9 103457315 103457343 -38814101 + AT_rich Low_complexity Low_complexity 1 28 0 1656 108 0 0 chr9 103458739 103458961 -38812483 - AluSg SINE Alu -88 222 1 180 0 0 0 chr9 103458961 103458981 -38812463 + (T)n Simple_repeat Simple_repeat 1 20 0 437 241 66 44 chr9 103459476 103459613 -38811831 - MIR SINE MIR -101 161 22 201 175 19 68 chr9 103459627 103459730 -38811714 + T-rich Low_complexity Low_complexity 1 98 0 2479 68 31 0 chr9 103459738 103460060 -38811384 - L1PA7 LINE L1 -6 6148 5817 4288 61 4 16 chr9 103460060 103460667 -38810777 + L1PA7 LINE L1 5216 5814 -340 1718 127 6 96 chr9 103460667 103460990 -38810454 - AluSx SINE Alu -17 295 2 508 325 111 26 chr9 103461084 103461318 -38810126 - MIR SINE MIR 0 262 9 255 308 49 49 chr9 103461734 103461877 -38809567 + MER5A DNA MER1_type 2 144 -45 237 245 10 128 chr9 103462495 103462597 -38808847 - L2 LINE L2 0 3272 3183 332 287 21 0 chr9 103464001 103464095 -38807349 - L2 LINE L2 0 3313 3218 21 36 0 0 chr9 103464373 103464401 -38807043 + AT_rich Low_complexity Low_complexity 1 28 0 277 326 35 43 chr9 103465767 103465908 -38805536 + MIR3 SINE MIR 59 198 -10 2079 106 7 7 chr9 103466348 103466641 -38804803 - AluSp SINE Alu -20 293 1 836 210 95 5 chr9 103467163 103467363 -38804081 + MER20 DNA MER1_type 1 218 -1 2490 110 6 8 chr9 103468232 103468597 -38802847 + THE1B LTR MaLR 1 364 0 276 408 62 0 chr9 103468627 103468757 -38802687 + L2 LINE L2 3113 3250 -22 206 31 0 31 chr9 103468870 103468902 -38802542 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 470 92 0 0 chr9 103468904 103468969 -38802475 - L1P4 LINE L1 -566 5600 5536 351 0 0 0 chr9 103468970 103469009 -38802435 + (TG)n Simple_repeat Simple_repeat 2 40 0 2081 47 0 0 chr9 103469009 103469263 -38802181 - L1PA4 LINE L1 -11 6144 5891 25 51 0 0 chr9 103469953 103469992 -38801452 + AT_rich Low_complexity Low_complexity 1 39 0 6495 147 26 39 chr9 103470190 103472023 -38799421 + L1PB4 LINE L1 3984 5793 -363 333 0 0 0 chr9 103472023 103472060 -38799384 + (CA)n Simple_repeat Simple_repeat 2 38 0 6495 147 26 39 chr9 103472060 103472159 -38799285 + L1PB4 LINE L1 5793 5892 -264 21 36 0 0 chr9 103474558 103474586 -38796858 + AT_rich Low_complexity Low_complexity 1 28 0 568 235 66 20 chr9 103474598 103474794 -38796650 - L1ME3A LINE L1 -5 6165 5961 443 179 0 12 chr9 103474950 103475034 -38796410 + AluJo/FLAM SINE Alu 48 130 -182 2594 62 7 0 chr9 103475034 103475343 -38796101 + AluY SINE Alu 1 311 0 667 150 9 18 chr9 103475355 103475468 -38795976 + FRAM SINE Alu 41 152 -24 485 113 0 0 chr9 103475478 103475549 -38795895 + AluS SINE Alu 1 71 -242 21 36 0 0 chr9 103476150 103476178 -38795266 + AT_rich Low_complexity Low_complexity 1 28 0 210 118 0 0 chr9 103477532 103477566 -38793878 + (A)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr9 103478662 103478682 -38792762 + (TTG)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr9 103478839 103478867 -38792577 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 103479003 103479034 -38792410 + AT_rich Low_complexity Low_complexity 1 31 0 204 40 0 0 chr9 103483712 103483737 -38787707 + (GA)n Simple_repeat Simple_repeat 1 25 0 402 279 122 0 chr9 103484373 103484520 -38786924 - MIR SINE MIR -10 252 88 1754 111 0 0 chr9 103484569 103484812 -38786632 - MER41B LTR ERV1 -88 547 305 205 250 206 0 chr9 103485302 103485370 -38786074 + L2 LINE L2 3218 3299 -14 409 339 122 5 chr9 103486102 103486323 -38785121 + LTR33 LTR ERVL 53 299 -222 247 175 0 0 chr9 103486371 103486411 -38785033 + LTR33 LTR ERVL 482 521 0 560 211 70 0 chr9 103486411 103486553 -38784891 + MIR SINE MIR 70 221 -41 210 179 0 0 chr9 103487082 103487138 -38784306 + T-rich Low_complexity Low_complexity 1 56 0 269 243 48 29 chr9 103489510 103489613 -38781831 - L1ME4a LINE L1 0 6121 6017 416 299 34 25 chr9 103489729 103489933 -38781511 - L1ME3A LINE L1 -339 5782 5577 563 303 127 19 chr9 103490078 103490511 -38780933 - L1MC4a LINE L1 -1934 5874 5395 833 165 31 58 chr9 103491415 103491477 -38779967 - Charlie1 DNA MER1_type 0 2761 2699 2261 54 10 61 chr9 103491477 103491790 -38779654 + AluY SINE Alu 1 297 -14 833 165 31 58 chr9 103491790 103491951 -38779493 - Charlie1 DNA MER1_type -62 2699 2544 409 237 52 59 chr9 103492142 103492277 -38779167 - MER94 DNA DNA 0 134 1 331 376 0 0 chr9 103492333 103492450 -38778994 - L2 LINE L2 -5 3267 3151 43091 30 21 1 chr9 103492576 103498606 -38772838 + L1PA2 LINE L1 2 6155 0 189 0 0 0 chr9 103498636 103498657 -38772787 + (A)n Simple_repeat Simple_repeat 1 21 0 517 349 71 17 chr9 103499765 103500003 -38771441 + MIR SINE MIR 1 251 -11 329 0 24 0 chr9 103500012 103500053 -38771391 + (CA)n Simple_repeat Simple_repeat 2 43 0 1846 189 0 15 chr9 103500943 103501286 -38770158 + MER2 DNA MER2_type 3 340 -4 199 309 0 0 chr9 103501469 103501511 -38769933 - MIR3 SINE MIR -24 184 143 375 281 62 31 chr9 103501665 103501793 -38769651 - MIR SINE MIR -112 150 19 289 323 60 8 chr9 103501885 103502018 -38769426 - MIR3 SINE MIR -60 148 9 423 0 0 0 chr9 103502355 103502402 -38769042 + (CA)n Simple_repeat Simple_repeat 2 48 0 2035 143 29 0 chr9 103502402 103502753 -38768691 + L1PB4 LINE L1 5794 6154 -2 29 60 0 0 chr9 103504726 103504776 -38766668 + AT_rich Low_complexity Low_complexity 1 50 0 297 246 122 26 chr9 103504837 103504981 -38766463 + MIR SINE MIR 51 199 -62 415 200 0 0 chr9 103506467 103506547 -38764897 + Tigger5 DNA MER2_type 1 80 -2243 259 176 147 15 chr9 103506547 103506615 -38764829 - Tigger5 DNA MER2_type -5 2318 2242 * 422 232 0 0 chr9 103506605 103506687 -38764757 + Tigger5 DNA MER2_type 2242 2323 0 1803 190 3 7 chr9 103506959 103507269 -38764175 + AluJo SINE Alu 1 309 -3 225 184 0 0 chr9 103507510 103507548 -38763896 + L2 LINE L2 3254 3291 -22 909 175 57 28 chr9 103507550 103507761 -38763683 - Tigger1 DNA MER2_type 0 2418 2202 824 117 6 86 chr9 103507757 103507919 -38763525 - Tigger1 DNA MER2_type -2267 151 3 * 10822 168 52 8 chr9 103508695 103512013 -38759431 + L1MA8 LINE L1 2823 6289 -2 29 60 0 0 chr9 103513218 103513268 -38758176 + AT_rich Low_complexity Low_complexity 1 50 0 868 288 45 20 chr9 103514768 103515164 -38756280 + L1PA16 LINE L1 10 415 -7166 427 338 47 20 chr9 103515510 103515658 -38755786 + L1M2 LINE L1 680 831 -6018 310 273 32 96 chr9 103516185 103516405 -38755039 + L1PA16 LINE L1 1739 1944 -5641 750 287 19 8 chr9 103516426 103516694 -38754750 + L1PA16 LINE L1 2057 2327 -5257 3667 171 62 19 chr9 103516703 103517204 -38754240 + L1PA16 LINE L1 2466 3017 -4567 2086 151 122 10 chr9 103517204 103517589 -38753855 - MSTA LTR MaLR 0 428 1 3667 171 62 19 chr9 103517589 103517899 -38753545 + L1PA16 LINE L1 3017 3312 -4272 1001 96 7 0 chr9 103517899 103518034 -38753410 + AluSq SINE Alu 90 225 -88 4645 165 54 48 chr9 103518038 103518559 -38752885 + L1PA16 LINE L1 5616 6133 -1471 3716 26 0 0 chr9 103518559 103518989 -38752455 + L1PA3 LINE L1 5723 6152 -3 4645 165 54 48 chr9 103518989 103520450 -38750994 + L1PA16 LINE L1 6133 7599 -5 1939 176 0 16 chr9 103520598 103520910 -38750534 + AluJo SINE Alu 1 307 -5 1374 139 5 0 chr9 103520952 103521175 -38750269 + L1PA16 LINE L1 5790 6013 -153 321 218 164 36 chr9 103521186 103521296 -38750148 + MIR SINE MIR 65 188 -74 211 211 0 0 chr9 103521840 103521878 -38749566 + CT-rich Low_complexity Low_complexity 2 39 0 940 204 89 0 chr9 103521989 103522180 -38749264 + MER3 DNA MER1_type 2 209 0 465 302 44 6 chr9 103522180 103522362 -38749082 + MIR SINE MIR 31 219 -43 197 267 0 0 chr9 103523213 103523258 -38748186 - L2 LINE L2 -4 3309 3265 256 202 192 20 chr9 103523654 103523753 -38747691 + MER5A DNA MER1_type 73 188 -1 664 221 49 6 chr9 103524755 103524918 -38746526 + MER63A DNA MER1_type 6 175 -35 26 0 0 0 chr9 103525058 103525084 -38746360 + AT_rich Low_complexity Low_complexity 1 26 0 1676 127 0 12 chr9 103525095 103525340 -38746104 - AluY SINE Alu -31 280 39 21 36 0 0 chr9 103526008 103526036 -38745408 + AT_rich Low_complexity Low_complexity 1 28 0 520 123 0 0 chr9 103526699 103526780 -38744664 + MLT2B2 LTR ERVL 1 81 -434 475 133 0 13 chr9 103526782 103526857 -38744587 + MLT2B1 LTR ERVL 115 188 -332 357 353 47 72 chr9 103527188 103527652 -38743792 + L2 LINE L2 2662 3099 -173 868 194 56 6 chr9 103528044 103528224 -38743220 + MER5A DNA MER1_type 1 189 0 1371 176 0 9 chr9 103528327 103528554 -38742890 - AluJo SINE Alu -87 225 1 478 283 57 13 chr9 103529586 103529745 -38741699 + MIR SINE MIR 20 185 -77 251 245 0 0 chr9 103530622 103530675 -38740769 + MIR SINE MIR 184 236 -26 185 271 17 34 chr9 103530643 103530702 -38740742 + L2 LINE L2 3250 3307 -6 * 521 340 123 14 chr9 103530970 103531408 -38740036 - L2 LINE L2 -355 2959 2474 580 284 37 0 chr9 103532035 103532197 -38739247 + L3 LINE CR1 547 714 -863 1481 212 42 39 chr9 103532248 103532607 -38738837 - MLT1A2 LTR MaLR -11 363 4 234 312 112 39 chr9 103532607 103532812 -38738632 - L2 LINE L2 -250 3063 2844 732 346 36 55 chr9 103532869 103533366 -38738078 - L2 LINE L2 -6 3266 2782 294 345 41 37 chr9 103533399 103533576 -38737868 - L2 LINE L2 -650 2664 2484 1703 206 67 47 chr9 103533576 103534071 -38737373 + MLT1D LTR MaLR 1 505 0 294 345 41 37 chr9 103534071 103534139 -38737305 - L2 LINE L2 -830 2484 2418 3073 117 24 0 chr9 103534308 103534769 -38736675 - HERVK14 LTR ERVK -3769 2176 1705 5031 78 13 1 chr9 103534803 103535494 -38735950 - HERVK14 LTR ERVK -5246 699 1 4225 89 40 2 chr9 103535494 103536077 -38735367 - LTR14B LTR ERVK 0 608 4 2181 105 10 0 chr9 103536731 103537026 -38734418 + AluSx SINE Alu 4 301 -11 450 325 101 5 chr9 103537790 103537978 -38733466 - MIR SINE MIR -4 258 53 23 33 0 0 chr9 103538364 103538394 -38733050 + AT_rich Low_complexity Low_complexity 1 30 0 256 325 42 94 chr9 103539809 103540021 -38731423 + MIR SINE MIR 48 248 -14 692 300 94 5 chr9 103540189 103540412 -38731032 + MIR SINE MIR 2 244 -18 1859 168 0 3 chr9 103540763 103541060 -38730384 - AluJb SINE Alu -16 296 1 212 255 79 42 chr9 103541346 103541455 -38729989 - MIR SINE MIR -59 149 35 1680 126 3 82 chr9 103543153 103543519 -38727925 + L1MA3 LINE L1 5969 6305 0 675 316 11 0 chr9 103543833 103544023 -38727421 - MER91A DNA MER1_type -1 195 4 276 274 159 41 chr9 103544201 103544372 -38727072 - MIR SINE MIR -70 192 3 259 192 126 69 chr9 103544559 103544664 -38726780 + MIR SINE MIR 64 176 -62 230 313 91 10 chr9 103544685 103544784 -38726660 + L2 LINE L2 3194 3300 -13 343 365 116 11 chr9 103544817 103545006 -38726438 - MIR SINE MIR -18 244 36 289 286 0 0 chr9 103544971 103545041 -38726403 + MIR SINE MIR 39 108 -154 * 576 330 38 0 chr9 103545038 103545250 -38726194 - MIR SINE MIR -23 239 20 491 165 19 48 chr9 103546109 103546212 -38725232 - L1MC1 LINE L1 -10 6323 6224 240 220 20 0 chr9 103546682 103546732 -38724712 - L2 LINE L2 -1 3312 3262 417 294 159 0 chr9 103547690 103547860 -38723584 - MIR SINE MIR 0 262 66 581 302 10 2 chr9 103548494 103548657 -38722787 - MIR SINE MIR -41 167 2 377 246 193 0 chr9 103549135 103549249 -38722195 - L2 LINE L2 -54 3259 3124 188 312 70 64 chr9 103549282 103549439 -38722005 - L2 LINE L2 -2028 1286 1129 203 222 51 128 chr9 103549599 103549716 -38721728 - MER5A DNA MER1_type 0 189 82 1884 165 26 21 chr9 103549716 103549816 -38721628 + MLT1B LTR MaLR 1 99 -291 7033 47 19 1 chr9 103549816 103550798 -38720646 + L1PA5 LINE L1 5153 6150 -4 1884 165 26 21 chr9 103550798 103551085 -38720359 + MLT1B LTR MaLR 99 390 0 467 154 103 0 chr9 103551085 103551163 -38720281 - MER5A DNA MER1_type -103 86 1 561 148 0 0 chr9 103551382 103551470 -38719974 - L1MA8 LINE L1 -385 5915 5828 1788 131 39 18 chr9 103551470 103551766 -38719678 + L1MA8 LINE L1 5946 6262 -29 2166 121 3 0 chr9 103551766 103552056 -38719388 - AluSq SINE Alu -21 292 2 1788 131 39 18 chr9 103552056 103552083 -38719361 + L1MA8 LINE L1 6262 6287 -4 1461 183 52 31 chr9 103552120 103552409 -38719035 + AluJo SINE Alu 1 295 -17 496 204 43 0 chr9 103552557 103552650 -38718794 + L2 LINE L2 3174 3270 -2 340 276 232 17 chr9 103554106 103554287 -38717157 - MIR SINE MIR -24 238 19 228 254 18 0 chr9 103555626 103555681 -38715763 + L2 LINE L2 3217 3272 0 327 294 113 89 chr9 103555927 103556342 -38715102 - HAL1 LINE L1 -900 1607 1183 352 324 70 16 chr9 103558041 103558226 -38713218 - MER117 DNA MER1_type -1 196 2 16504 48 3 8 chr9 103558312 103559959 -38711485 - L1P2 LINE L1 -535 5619 3983 2155 92 0 36 chr9 103559959 103560265 -38711179 - AluY SINE Alu -16 295 1 16504 48 3 8 chr9 103560265 103560952 -38710492 - L1P2 LINE L1 -2171 3983 3295 4674 47 2 5 chr9 103560929 103561504 -38709940 + L1PA5 LINE L1 5580 6152 -2 * 182 158 105 35 chr9 103561578 103561635 -38709809 - L2 LINE L2 -7 3306 3246 1552 178 94 58 chr9 103561643 103561971 -38709473 - MSTD LTR MaLR 0 396 51 2223 125 3 0 chr9 103561971 103562283 -38709161 - AluSp SINE Alu 0 313 1 1552 178 94 58 chr9 103562283 103562336 -38709108 - MSTD LTR MaLR -345 51 1 330 333 16 8 chr9 103562376 103562502 -38708942 - L2 LINE L2 -3 3310 3184 1870 181 0 6 chr9 103562652 103562966 -38708478 + AluJb SINE Alu 1 312 0 201 296 88 40 chr9 103563344 103563469 -38707975 - L2 LINE L2 -590 2724 2594 682 334 92 64 chr9 103563571 103564099 -38707345 - L2 LINE L2 -740 2574 2018 1901 153 3 10 chr9 103564099 103564394 -38707050 + AluSx SINE Alu 1 293 -19 682 334 92 64 chr9 103564394 103564601 -38706843 - L2 LINE L2 -1296 2018 1818 1417 305 36 17 chr9 103564799 103565277 -38706167 - LTR16C LTR ERVL -2 489 3 236 299 31 31 chr9 103565874 103565971 -38705473 + HAL1 LINE L1 2398 2494 -13 342 314 94 19 chr9 103566624 103566783 -38704661 + MIR SINE MIR 73 243 -19 260 219 208 10 chr9 103567502 103567598 -38703846 + L3 LINE CR1 1358 1472 -105 575 271 47 21 chr9 103567851 103568043 -38703401 + MIR SINE MIR 48 244 -18 430 269 22 71 chr9 103568369 103568551 -38702893 + MIR SINE MIR 31 203 -59 228 250 0 0 chr9 103569688 103569732 -38701712 - L2 LINE L2 -5 3308 3265 744 256 26 5 chr9 103570530 103570721 -38700723 + MIR SINE MIR 12 206 -56 2016 151 0 16 chr9 103570730 103571047 -38700397 - AluSx SINE Alu 0 312 1 226 308 22 33 chr9 103571761 103571852 -38699592 - L2 LINE L2 -217 3055 2966 257 263 179 34 chr9 103572013 103572192 -38699252 + L3b LINE CR1 1184 1388 -195 245 359 123 31 chr9 103572203 103572618 -38698826 + L2 LINE L2 2488 2940 -374 227 278 0 11 chr9 103573703 103573793 -38697651 + L1MC4 LINE L1 6614 6702 -1340 237 222 0 0 chr9 103573794 103573848 -38697596 - L1M3 LINE L1 -391 5789 5736 2300 145 80 17 chr9 103573904 103574367 -38697077 + L1MA7 LINE L1 5793 6284 -7 751 151 66 0 chr9 103574374 103574526 -38696918 + L1MB5 LINE L1 6005 6166 -8 3286 208 42 33 chr9 103574545 103575518 -38695926 + L1MB8 LINE L1 5188 6161 -17 24 0 0 0 chr9 103577456 103577480 -38693964 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr9 103577711 103577739 -38693705 + AT_rich Low_complexity Low_complexity 1 28 0 362 304 122 35 chr9 103579827 103580113 -38691331 - L1ME3A LINE L1 -238 6001 5691 599 296 42 30 chr9 103580116 103580451 -38690993 - L1ME3A LINE L1 -1777 4438 4100 34 42 0 0 chr9 103580545 103580593 -38690851 + AT_rich Low_complexity Low_complexity 1 48 0 2914 118 15 12 chr9 103580851 103581352 -38690092 - MER4B LTR ERV1 0 779 99 343 291 78 17 chr9 103581379 103581558 -38689886 - L1ME3A LINE L1 -4959 1437 1248 417 259 95 49 chr9 103581582 103581887 -38689557 - L1ME3A LINE L1 -5191 1014 696 297 243 0 63 chr9 103583220 103583331 -38688113 + CT-rich Low_complexity Low_complexity 1 104 0 413 266 97 19 chr9 103584197 103584351 -38687093 + MIR SINE MIR 5 170 -92 216 97 0 0 chr9 103584495 103584526 -38686918 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 371 69 35 chr9 103585533 103585649 -38685795 - MIR SINE MIR -90 172 53 21 0 0 0 chr9 103586105 103586126 -38685318 + AT_rich Low_complexity Low_complexity 1 21 0 2414 73 0 10 chr9 103586298 103586599 -38684845 + AluSp SINE Alu 3 300 -13 770 265 46 46 chr9 103586791 103587115 -38684329 - MLT1I LTR MaLR -22 387 64 374 341 14 7 chr9 103587330 103587468 -38683976 + L3 LINE CR1 1437 1575 -2 373 327 40 11 chr9 103588128 103588406 -38683038 + L1ME4a LINE L1 5541 5826 -295 2487 50 0 13 chr9 103588409 103588709 -38682735 + AluY SINE Alu 1 296 -15 555 264 61 12 chr9 103590112 103590275 -38681169 - MIR3 SINE MIR -1 207 37 218 383 40 32 chr9 103590485 103590736 -38680708 - L2 LINE L2 -257 3056 2804 228 344 169 0 chr9 103591618 103591772 -38679672 + MER5A DNA MER1_type 7 186 -3 1050 291 48 43 chr9 103591892 103592284 -38679160 + LTR16C LTR ERVL 98 491 0 1068 204 20 119 chr9 103592747 103593150 -38678294 - MLT1A1 LTR MaLR -2 363 1 501 266 115 21 chr9 103593285 103593477 -38677967 + MIR SINE MIR 19 228 -34 1093 302 58 11 chr9 103594359 103594736 -38676708 - LTR16C LTR ERVL 0 491 97 343 44 0 0 chr9 103595086 103595131 -38676313 + MADE1 DNA Mariner 1 45 -35 424 319 60 39 chr9 103595216 103595398 -38676046 + MIR3 SINE MIR 20 205 -3 304 178 34 8 chr9 103595477 103595595 -38675849 + (TA)n Simple_repeat Simple_repeat 1 121 0 427 326 43 22 chr9 103597003 103597187 -38674257 - MER5A DNA MER1_type 0 189 2 188 375 0 0 chr9 103597540 103597604 -38673840 - L2 LINE L2 -3 3310 3247 26 30 0 0 chr9 103598903 103598936 -38672508 + AT_rich Low_complexity Low_complexity 1 33 0 470 293 29 0 chr9 103599799 103599939 -38671505 + Charlie8 DNA MER1_type 118 261 -2156 197 209 0 0 chr9 103600716 103600759 -38670685 + MIR SINE MIR 90 132 -130 954 164 17 17 chr9 103600869 103601046 -38670398 + MER5A DNA MER1_type 7 183 -6 2421 53 0 0 chr9 103602590 103602897 -38668547 - AluY SINE Alu 0 307 1 978 194 57 1 chr9 103603029 103603267 -38668177 + MER90 LTR ERV1 6 294 -320 481 189 75 9 chr9 103603273 103603379 -38668065 + MER90 LTR ERV1 498 610 -4 754 293 89 13 chr9 103603630 103603855 -38667589 - MIR SINE MIR -1 261 20 289 87 0 0 chr9 103603866 103603914 -38667530 - L1M2 LINE L1 -533 5764 5717 2181 120 0 0 chr9 103603914 103604213 -38667231 - AluSx SINE Alu -13 299 1 672 298 22 17 chr9 103604803 103604981 -38666463 - MIR SINE MIR -49 213 35 186 133 0 0 chr9 103606246 103606276 -38665168 + (CA)n Simple_repeat Simple_repeat 2 31 0 2190 127 0 9 chr9 103606571 103606886 -38664558 + AluSx SINE Alu 1 312 0 509 222 16 32 chr9 103606949 103607075 -38664369 - MER57A LTR ERV1 0 403 280 4403 137 7 61 chr9 103607087 103607110 -38664334 - L1MA4 LINE L1 -213 6087 6064 2062 93 35 3 chr9 103607110 103607399 -38664045 - AluSg SINE Alu -12 298 1 4403 137 7 61 chr9 103607399 103608379 -38663065 - L1MA4 LINE L1 -236 6064 5136 877 189 109 25 chr9 103608523 103608724 -38662720 - MER20 DNA MER1_type -1 218 1 376 181 3 0 chr9 103609185 103609253 -38662191 - MER58A DNA MER1_type 0 224 155 533 252 0 0 chr9 103609270 103609385 -38662059 + MER45A DNA AcHobo 63 177 -1 895 218 36 12 chr9 103609388 103609553 -38661891 - MER58A DNA MER1_type -54 170 2 282 218 13 70 chr9 103609753 103609881 -38661563 + L1MC/D LINE L1 5562 5687 -504 484 235 78 39 chr9 103610289 103610442 -38661002 + MIR SINE MIR 86 244 -18 186 103 0 0 chr9 103610450 103610479 -38660965 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1003 180 113 0 chr9 103611872 103612066 -38659378 - MER20 DNA MER1_type -2 217 2 364 271 178 0 chr9 103612135 103612264 -38659180 - MIR SINE MIR -52 210 59 559 335 82 20 chr9 103612528 103612821 -38658623 - MLT1K LTR MaLR -277 311 1 1107 165 5 0 chr9 103612927 103613121 -38658323 - L1PB1 LINE L1 0 6151 5957 473 324 102 5 chr9 103613376 103613592 -38657852 - MIR SINE MIR -6 256 20 1450 187 3 67 chr9 103614861 103615176 -38656268 + AluJo SINE Alu 1 295 -17 1985 124 61 25 chr9 103615313 103615675 -38655769 + THE1C LTR MaLR 1 375 0 1340 212 104 4 chr9 103616435 103616743 -38654701 + MER6 DNA MER2_type -9 329 -106 1288 139 31 9 chr9 103616745 103616968 -38654476 + MER6 DNA MER2_type 606 833 -32 195 114 0 0 chr9 103617548 103617583 -38653861 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 589 333 6 11 chr9 103617700 103617883 -38653561 - MIR3 SINE MIR -17 191 10 1994 167 23 9 chr9 103618229 103618571 -38652873 - MLT1A1 LTR MaLR 0 365 19 1808 104 41 11 chr9 103619097 103619422 -38652022 - L1P4 LINE L1 -629 5539 5198 2063 135 0 7 chr9 103619610 103619907 -38651537 - AluSx SINE Alu -17 295 1 28 29 0 0 chr9 103621401 103621436 -38650008 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 103622702 103622727 -38648717 + AT_rich Low_complexity Low_complexity 1 25 0 317 291 70 0 chr9 103622907 103622993 -38648451 - MIR SINE MIR -151 111 20 318 252 144 45 chr9 103624339 103624450 -38646994 - MIR3 SINE MIR -75 133 12 394 236 19 28 chr9 103624548 103624654 -38646790 + MIR SINE MIR 45 149 -113 676 242 136 25 chr9 103625299 103625616 -38645828 + MLT1A1 LTR MaLR 1 396 0 22 0 0 0 chr9 103626267 103626289 -38645155 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 103627728 103627749 -38643695 + AT_rich Low_complexity Low_complexity 1 21 0 393 305 96 86 chr9 103627946 103628238 -38643206 - L3 LINE CR1 -72 1505 1211 216 0 0 0 chr9 103628365 103628389 -38643055 + (CA)n Simple_repeat Simple_repeat 1 24 0 930 145 59 0 chr9 103628443 103628629 -38642815 - L1MA5 LINE L1 -5 6295 6099 3019 137 53 6 chr9 103628629 103629280 -38642164 + L1P5 LINE L1 5102 5775 -381 180 0 0 0 chr9 103629284 103629304 -38642140 + (TG)n Simple_repeat Simple_repeat 2 21 0 246 119 0 0 chr9 103629422 103629464 -38641980 - L1ME LINE L1 -346 5820 5779 315 221 47 12 chr9 103629498 103629584 -38641860 + L1MC4 LINE L1 6614 6702 -1340 2610 96 31 0 chr9 103630062 103630415 -38641029 - THE1B LTR MaLR 0 364 1 208 349 63 16 chr9 103630824 103630950 -38640494 + L2 LINE L2 3182 3313 0 512 348 31 69 chr9 103632332 103632478 -38638966 - L2 LINE L2 -16 3256 3106 2164 100 106 6 chr9 103632478 103632809 -38638635 - THE1B LTR MaLR 0 364 1 512 348 31 69 chr9 103632809 103632898 -38638546 - L2 LINE L2 -166 3106 3034 1720 196 0 20 chr9 103632898 103633204 -38638240 + AluJb SINE Alu 1 300 -12 512 348 31 69 chr9 103633204 103633286 -38638158 - L2 LINE L2 -238 3034 2950 23 0 0 0 chr9 103634025 103634048 -38637396 + AT_rich Low_complexity Low_complexity 1 23 0 2068 236 46 19 chr9 103634685 103635248 -38636196 - L1MEc LINE L1 -5780 616 39 286 267 13 13 chr9 103635644 103635719 -38635725 + ORSL DNA AcHobo 201 275 0 675 221 20 67 chr9 103636001 103636196 -38635248 + MER20 DNA MER1_type 29 214 -5 1215 191 5 5 chr9 103636203 103636423 -38635021 + AluJb SINE Alu 85 304 -8 291 342 34 34 chr9 103637317 103637466 -38633978 + L2 LINE L2 2903 3051 -221 1162 145 95 4 chr9 103637482 103637724 -38633720 + ORSL DNA AcHobo 2 265 -10 4447 247 73 3 chr9 103638080 103639257 -38632187 + L1MDa LINE L1 18 1276 -5264 2138 166 34 13 chr9 103639251 103639698 -38631746 - L1 LINE L1 -1380 4766 4311 * 364 320 116 10 chr9 103639733 103640062 -38631382 - L1ME LINE L1 -541 5629 5274 13225 72 21 3 chr9 103640265 103641956 -38629488 + HERVL-A1 LTR ERVL 3933 5654 0 2971 83 20 5 chr9 103641956 103642354 -38629090 + MLT2A1 LTR ERVL 1 404 -40 22 0 0 0 chr9 103642354 103642376 -38629068 + AT_rich Low_complexity Low_complexity 1 22 0 573 129 0 0 chr9 103642376 103642469 -38628975 + (CA)n Simple_repeat Simple_repeat 2 94 0 256 180 0 20 chr9 103642470 103642520 -38628924 + MLT2A1 LTR ERVL 506 554 0 4026 170 27 6 chr9 103642536 103643354 -38628090 + L1M2 LINE L1 4550 5384 -762 330 89 67 0 chr9 103643359 103643449 -38627995 + (TA)n Simple_repeat Simple_repeat 2 97 0 2035 158 0 6 chr9 103643452 103643787 -38627657 + L1M2 LINE L1 5399 5731 -560 229 123 35 53 chr9 103643897 103643954 -38627490 + L1MC4 LINE L1 6648 6703 -1339 362 196 0 72 chr9 103643975 103644072 -38627372 - L1MC4 LINE L1 -1339 6703 6614 282 155 0 87 chr9 103644083 103644244 -38627200 + (TA)n Simple_repeat Simple_repeat 1 147 0 2240 140 11 11 chr9 103644272 103644643 -38626801 + L1PB4 LINE L1 5782 6152 -4 4515 161 71 33 chr9 103644646 103644913 -38626531 - L1MA5 LINE L1 -188 6112 5857 234 0 0 0 chr9 103644913 103644939 -38626505 + (TG)n Simple_repeat Simple_repeat 2 27 0 4515 161 71 33 chr9 103644939 103645207 -38626237 - L1MA5 LINE L1 -443 5857 5601 895 137 77 0 chr9 103645207 103645375 -38626069 + L1PA16 LINE L1 5980 6160 -6 4515 161 71 33 chr9 103645375 103646378 -38625066 - L1MA5 LINE L1 -699 5601 4524 237 282 94 26 chr9 103646966 103647083 -38624361 - LTR16B LTR ERVL -13 451 327 1461 131 41 0 chr9 103647173 103647394 -38624050 + MER30 DNA MER1_type 1 230 0 301 302 47 0 chr9 103647551 103647637 -38623807 - LTR16A LTR ERVL -336 114 25 448 236 135 120 chr9 103647786 103648257 -38623187 - MLT1G1 LTR MaLR -63 492 3 331 339 135 16 chr9 103648353 103648598 -38622846 - L3 LINE CR1 -373 1204 931 951 328 60 90 chr9 103648603 103650051 -38621393 - L2 LINE L2 -8 3264 1862 521 266 143 30 chr9 103650585 103651101 -38620343 + L1ME LINE L1 5150 5726 -440 232 303 13 0 chr9 103651115 103651191 -38620253 + L1ME LINE L1 5808 5884 -286 24 0 0 0 chr9 103651206 103651230 -38620214 + AT_rich Low_complexity Low_complexity 1 24 0 284 369 95 11 chr9 103651471 103651650 -38619794 + MIR3 SINE MIR 12 205 -3 507 78 0 0 chr9 103651906 103651983 -38619461 + (TA)n Simple_repeat Simple_repeat 2 78 0 675 222 199 18 chr9 103652267 103652488 -38618956 - MIR SINE MIR -1 261 1 309 275 128 0 chr9 103652542 103652651 -38618793 - MLT1H LTR MaLR -19 530 408 252 340 170 0 chr9 103655258 103655399 -38616045 + MER117 DNA MER1_type 32 196 -1 1132 301 80 43 chr9 103656003 103656541 -38614903 + L2 LINE L2 29 586 -2728 188 257 20 99 chr9 103656693 103656794 -38614650 + L2 LINE L2 581 673 -2641 565 228 89 56 chr9 103656859 103657039 -38614405 + L2 LINE L2 2219 2404 -910 344 222 167 0 chr9 103657035 103657125 -38614319 + L2 LINE L2 3205 3309 -4 * 181 347 107 25 chr9 103657307 103657503 -38613941 + L2 LINE L2 2632 2843 -471 335 320 10 82 chr9 103657644 103657838 -38613606 + L1ME4a LINE L1 5840 6019 -102 714 196 83 0 chr9 103657960 103658128 -38613316 - MER3 DNA MER1_type -4 205 24 2067 130 24 0 chr9 103659116 103659409 -38612035 + AluSx SINE Alu 1 300 -12 3211 130 56 0 chr9 103659891 103660392 -38611052 - MER1A DNA MER1_type 0 529 1 264 296 218 34 chr9 103660393 103660572 -38610872 + MIR SINE MIR 32 243 -19 440 302 65 25 chr9 103660729 103660974 -38610470 - L1ME LINE L1 -470 5651 5397 452 242 77 41 chr9 103661018 103661212 -38610232 + MER63A DNA MER1_type 10 210 0 259 248 39 59 chr9 103661339 103661492 -38609952 - L1 LINE L1 -910 5236 5087 303 257 110 7 chr9 103662906 103663042 -38608402 - MER103 DNA DNA 0 166 17 187 218 277 30 chr9 103663239 103663340 -38608104 - L2 LINE L2 -3 3310 3185 259 300 92 25 chr9 103663441 103663561 -38607883 - L3 LINE CR1 -28 1549 1422 209 342 13 25 chr9 103663951 103664030 -38607414 - MIR SINE MIR -110 98 21 369 322 138 19 chr9 103664707 103664968 -38606476 - L3 LINE CR1 -809 768 477 563 227 80 0 chr9 103665258 103665408 -38606036 - MLT1A1 LTR MaLR 0 365 204 1747 129 115 19 chr9 103665411 103665926 -38605518 - MER4A LTR ERV1 0 664 1 531 199 193 23 chr9 103665928 103666099 -38605345 - MLT1A1 LTR MaLR -162 203 4 464 328 114 61 chr9 103666105 103666743 -38604701 - L2 LINE L2 -562 2752 2081 258 263 0 0 chr9 103666876 103666933 -38604511 - MIR SINE MIR -19 243 187 202 307 36 72 chr9 103667096 103667262 -38604182 + L2 LINE L2 3154 3313 0 2723 90 71 0 chr9 103667431 103667842 -38603602 + L1PA12 LINE L1 5729 6168 0 533 205 185 60 chr9 103668007 103668207 -38603237 - MIR SINE MIR -32 230 6 5336 59 0 3 chr9 103668342 103669017 -38602427 + L1PA7 LINE L1 5482 6154 0 205 292 115 31 chr9 103669360 103669456 -38601988 - MIR SINE MIR -80 182 79 541 258 94 0 chr9 103669546 103669705 -38601739 + MIR SINE MIR 58 231 -31 235 150 33 17 chr9 103669730 103669790 -38601654 + CT-rich Low_complexity Low_complexity 5 65 0 365 289 10 0 chr9 103670620 103670717 -38600727 - MER81 DNA DNA -13 101 4 2251 89 0 3 chr9 103671563 103671854 -38599590 + AluSg SINE Alu 1 290 -20 1821 111 115 11 chr9 103671993 103672272 -38599172 + AluSg SINE Alu 1 308 -2 443 106 0 30 chr9 103673566 103673632 -38597812 + Alu SINE Alu 1 64 -254 2718 53 6 14 chr9 103673762 103674118 -38597326 + L1PA5 LINE L1 5802 6154 0 332 224 0 15 chr9 103674431 103674498 -38596946 + MIR SINE MIR 40 105 -103 317 289 12 0 chr9 103674773 103674856 -38596588 + MIR3 SINE MIR 122 205 -3 24 0 0 0 chr9 103676597 103676621 -38594823 + AT_rich Low_complexity Low_complexity 1 24 0 304 236 260 16 chr9 103677080 103677207 -38594237 + MIR SINE MIR 86 243 -19 21 0 0 0 chr9 103677737 103677758 -38593686 + AT_rich Low_complexity Low_complexity 1 21 0 273 282 29 0 chr9 103678782 103678885 -38592559 + L1ME LINE L1 5675 5780 -341 235 349 9 28 chr9 103680126 103680232 -38591212 - MIR3 SINE MIR -21 187 84 563 237 22 22 chr9 103680656 103680795 -38590649 + MIR3 SINE MIR 59 197 -11 180 238 0 0 chr9 103682192 103682234 -38589210 - L3b LINE CR1 -241 1342 1301 622 269 22 28 chr9 103683441 103683623 -38587821 - MIR3 SINE MIR -2 206 26 316 331 32 19 chr9 103683710 103683867 -38587577 - MIR SINE MIR -54 208 50 1862 222 20 55 chr9 103684175 103684721 -38586723 + L1 LINE L1 7 533 -6497 1427 164 26 22 chr9 103684757 103685080 -38586364 + L1 LINE L1 1821 2155 -4882 10626 178 39 5 chr9 103685090 103687450 -38583994 + L1 LINE L1 3355 5793 -1313 332 174 101 67 chr9 103687439 103687588 -38583856 + L1M3e LINE L1 4103 4256 -2850 * 8711 153 42 70 chr9 103687719 103689000 -38582444 + L1M3e LINE L1 4247 5578 -1528 770 175 0 0 chr9 103689000 103689126 -38582318 - FLAM_C SINE Alu -17 126 1 8711 153 42 70 chr9 103689126 103689835 -38581609 + L1M3e LINE L1 5578 6305 -801 190 319 44 44 chr9 103689982 103690073 -38581371 - L2 LINE L2 -47 3266 3176 707 146 35 62 chr9 103690243 103690441 -38581003 - MER6 DNA MER2_type -4 861 -65 185 200 75 0 chr9 103692072 103692112 -38579332 + L2 LINE L2 2517 2559 -755 268 268 13 72 chr9 103692164 103692237 -38579207 - MIR SINE MIR -30 232 171 2061 132 3 0 chr9 103692237 103692533 -38578911 - AluSx SINE Alu -15 297 1 268 268 13 72 chr9 103692533 103692612 -38578832 - MIR SINE MIR -91 171 89 2677 35 9 9 chr9 103693180 103693526 -38577918 - L1PA5 LINE L1 -229 5925 5580 * 15867 42 5 7 chr9 103693503 103694190 -38577254 + L1P1 LINE L1 3295 3982 -2173 2199 86 0 30 chr9 103694190 103694494 -38576950 + AluY SINE Alu 1 295 -16 15867 42 5 7 chr9 103694494 103696335 -38575109 + L1P1 LINE L1 3982 5816 -339 391 249 55 36 chr9 103697044 103697209 -38574235 + L1ME4a LINE L1 5508 5675 -446 37688 50 55 2 chr9 103697381 103703209 -38568235 + L1PA3 LINE L1 7 6152 -3 361 221 36 97 chr9 103703268 103703463 -38567981 + L1ME4a LINE L1 5939 6121 0 23 33 0 0 chr9 103704238 103704268 -38567176 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 103704516 103704537 -38566907 + AT_rich Low_complexity Low_complexity 1 21 0 569 277 87 21 chr9 103704896 103705138 -38566306 - L2 LINE L2 -1 3312 3055 849 204 17 74 chr9 103706014 103706245 -38565199 - MER20 DNA MER1_type 0 219 2 1645 166 29 18 chr9 103706432 103706709 -38564735 - AluJb SINE Alu -18 294 15 25 31 0 0 chr9 103707556 103707588 -38563856 + AT_rich Low_complexity Low_complexity 1 32 0 982 252 29 20 chr9 103708283 103708529 -38562915 + MIR SINE MIR 15 262 0 2138 125 10 0 chr9 103709228 103709532 -38561912 - AluSx SINE Alu -1 311 5 2092 130 6 13 chr9 103709537 103709852 -38561592 - AluSq SINE Alu 0 313 1 453 319 0 8 chr9 103710605 103710724 -38560720 - L2 LINE L2 0 3313 3196 255 189 0 0 chr9 103711457 103711510 -38559934 + (TG)n Simple_repeat Simple_repeat 1 53 0 1599 179 120 32 chr9 103714362 103714803 -38556641 + MLT1D LTR MaLR 21 500 -5 238 288 248 0 chr9 103715909 103716034 -38555410 - MIR3 SINE MIR -12 196 41 255 206 55 0 chr9 103719988 103720061 -38551383 - L1MA10 LINE L1 -9 6325 6249 760 178 80 19 chr9 103720072 103720285 -38551159 - L1ME1 LINE L1 -167 5999 5774 1199 114 13 53 chr9 103720697 103720924 -38550520 - Tigger1 DNA MER2_type 0 2418 2201 568 208 26 19 chr9 103720912 103721066 -38550378 - Tigger1 DNA MER2_type -2261 157 3 * 1447 164 48 7 chr9 103721223 103721516 -38549928 - L1MA4 LINE L1 -7 6293 5989 437 200 51 11 chr9 103722251 103722360 -38549084 - MIR SINE MIR -62 146 36 2443 70 0 3 chr9 103722411 103722713 -38548731 + AluY SINE Alu 4 304 -7 626 243 87 5 chr9 103723137 103723322 -38548122 + MIR SINE MIR 63 262 0 276 289 93 0 chr9 103723325 103723422 -38548022 - MIR SINE MIR -50 212 107 742 181 0 15 chr9 103724305 103724438 -38547006 + AluJo SINE Alu 4 134 -178 420 223 61 117 chr9 103724613 103724743 -38546701 - MIR SINE MIR -16 246 129 2113 140 0 6 chr9 103724743 103725057 -38546387 + AluJb SINE Alu 1 312 0 420 223 61 117 chr9 103725057 103725123 -38546321 - MIR SINE MIR -133 129 61 1542 104 0 5 chr9 103725447 103725659 -38545785 - AluSg/x SINE Alu -29 281 71 185 344 80 49 chr9 103726483 103726646 -38544798 + L2 LINE L2 3040 3207 -65 409 216 101 40 chr9 103727009 103727157 -38544287 - MIR SINE MIR -70 192 36 339 171 29 0 chr9 103727984 103728089 -38543355 + (TA)n Simple_repeat Simple_repeat 2 109 0 242 140 60 20 chr9 103728105 103728155 -38543289 + MIR SINE MIR 85 136 -126 189 147 0 0 chr9 103728156 103728190 -38543254 + (TA)n Simple_repeat Simple_repeat 1 34 0 1962 94 0 0 chr9 103728228 103728482 -38542962 + AluSq SINE Alu 60 313 0 437 282 132 41 chr9 103729101 103729420 -38542024 + L1M4 LINE L1 2688 3035 -3111 1624 163 91 0 chr9 103729869 103730145 -38541299 + AluJo SINE Alu 2 302 -10 2322 103 3 0 chr9 103730213 103730514 -38540930 + AluSp SINE Alu 1 302 -11 3088 133 83 30 chr9 103733921 103735000 -38536444 - MER11A LTR ERVK 0 1236 1 672 334 159 37 chr9 103735146 103735852 -38535592 - L2 LINE L2 0 3272 2489 270 250 19 75 chr9 103737268 103737428 -38534016 + HAL1 LINE L1 1169 1319 -1188 1030 197 18 96 chr9 103737433 103737768 -38533676 - MLT1A1 LTR MaLR 0 365 57 246 217 0 17 chr9 103737828 103737888 -38533556 - MLT1A1 LTR MaLR -306 59 1 351 289 109 29 chr9 103737896 103738207 -38533237 + HAL1 LINE L1 1325 1660 -847 706 219 151 67 chr9 103738487 103739058 -38532386 - L1MC5 LINE L1 -30 7931 7313 349 243 103 40 chr9 103739390 103739567 -38531877 + L1M4 LINE L1 3099 3286 -2860 305 213 12 25 chr9 103739790 103739870 -38531574 - MIR SINE MIR 0 262 184 233 236 62 56 chr9 103739870 103740014 -38531430 + L1M4 LINE L1 3901 4045 -2101 1267 219 104 0 chr9 103740182 103740461 -38530983 + AluJo SINE Alu 1 308 -4 216 0 0 0 chr9 103741165 103741189 -38530255 + (AGCTG)n Simple_repeat Simple_repeat 5 28 0 271 269 128 43 chr9 103741453 103741594 -38529850 + MIR SINE MIR 54 206 -56 210 302 42 21 chr9 103742088 103742184 -38529260 - MER5A DNA MER1_type -24 165 68 202 368 32 11 chr9 103742489 103742584 -38528860 - MIR SINE MIR -81 127 31 411 311 183 9 chr9 103742875 103743094 -38528350 + MIR SINE MIR 6 262 0 2406 77 0 0 chr9 103743221 103743520 -38527924 - AluSg SINE Alu -11 299 1 466 247 174 0 chr9 103743632 103743787 -38527657 - MER5A DNA MER1_type 0 189 4 306 0 0 0 chr9 103744702 103744736 -38526708 + (CA)n Simple_repeat Simple_repeat 2 35 0 2478 50 0 3 chr9 103744765 103745062 -38526382 + AluY SINE Alu 1 296 -15 2236 102 16 67 chr9 103745126 103745500 -38525944 + THE1A LTR MaLR 1 355 0 339 329 121 0 chr9 103746182 103746322 -38525122 - MIR SINE MIR -95 167 11 195 184 0 0 chr9 103746771 103746809 -38524635 + CT-rich Low_complexity Low_complexity 4 41 0 2379 158 16 12 chr9 103747357 103747787 -38523657 - MSTB1 LTR MaLR 0 432 1 22 35 0 0 chr9 103748311 103748340 -38523104 + AT_rich Low_complexity Low_complexity 1 29 0 254 154 0 19 chr9 103748789 103748841 -38522603 - MER96 DNA MER1_type? 0 175 125 22 35 0 0 chr9 103749241 103749270 -38522174 + AT_rich Low_complexity Low_complexity 1 29 0 208 208 0 42 chr9 103749565 103749613 -38521831 + GA-rich Low_complexity Low_complexity 4 49 0 359 130 0 0 chr9 103750703 103750757 -38520687 - THE1B LTR MaLR 0 364 311 309 339 16 16 chr9 103750899 103751026 -38520418 - MIR SINE MIR -87 175 49 237 270 0 27 chr9 103751475 103751549 -38519895 - Charlie8 DNA MER1_type 0 2417 2346 2323 103 0 0 chr9 103751888 103752189 -38519255 + AluSg SINE Alu 1 301 -9 230 353 54 60 chr9 103752513 103752697 -38518747 + L2 LINE L2 3075 3257 -15 280 293 60 26 chr9 103752773 103752889 -38518555 + L2 LINE L2 2667 2786 -528 1693 279 19 26 chr9 103752914 103753449 -38517995 + REP3 LTR ERV 4 534 -28 953 213 10 5 chr9 103753595 103753802 -38517642 - MER3 DNA MER1_type 0 209 2 383 252 30 99 chr9 103753805 103753936 -38517508 + L2 LINE L2 3150 3271 -1 447 319 62 21 chr9 103755381 103755525 -38515919 - MER5A DNA MER1_type -23 166 17 420 219 82 55 chr9 103755736 103755882 -38515562 + MIR SINE MIR 2 151 -111 186 233 0 0 chr9 103757039 103757082 -38514362 - L2 LINE L2 -4 3309 3267 335 259 29 2 chr9 103757135 103757272 -38514172 + MER58A DNA MER1_type 1 164 0 252 73 55 127 chr9 103757272 103757325 -38514119 - Tigger4(Zombi) DNA MER2_type -2682 49 1 225 94 0 0 chr9 103757335 103757367 -38514077 + MLT2D LTR ERVL 383 414 0 318 118 0 0 chr9 103757376 103757427 -38514017 + MER58A DNA MER1_type 174 224 0 276 343 97 0 chr9 103757503 103757637 -38513807 - L2 LINE L2 -177 3095 2949 453 250 8 39 chr9 103757671 103757799 -38513645 + L2 LINE L2 3186 3309 -4 2412 100 0 0 chr9 103758912 103759223 -38512221 - AluY SINE Alu 0 311 1 5101 145 28 31 chr9 103759678 103760582 -38510862 + MER54A LTR ERVL 1 901 0 1546 233 22 6 chr9 103761080 103761434 -38510010 - MLT1A1 LTR MaLR 0 396 3 6074 193 149 43 chr9 103761436 103763004 -38508440 - MLT1A1-int LTR MaLR 0 1735 1 865 258 14 0 chr9 103763004 103763221 -38508223 - MLT1A1 LTR MaLR 0 374 155 24 32 0 0 chr9 103763221 103763252 -38508192 + AT_rich Low_complexity Low_complexity 1 31 0 786 149 34 20 chr9 103763791 103763939 -38507505 - MLT1A1 LTR MaLR -215 150 1 313 235 12 12 chr9 103763957 103764038 -38507406 - Zaphod DNA AcHobo 0 4031 3951 745 202 0 0 chr9 103764045 103764164 -38507280 + FLAM_A SINE Alu 2 120 -13 1813 102 33 26 chr9 103764179 103764484 -38506960 - THE1B LTR MaLR -57 307 1 4787 87 1 1 chr9 103764484 103765140 -38506304 - THE1B-int LTR MaLR 0 1580 925 274 29 0 0 chr9 103765140 103765175 -38506269 - MSTA LTR MaLR -393 35 1 727 174 0 0 chr9 103765628 103765743 -38505701 + FLAM_C SINE Alu 1 115 -28 393 121 12 60 chr9 103765743 103765826 -38505618 - THE1B LTR MaLR -83 281 203 21 0 0 0 chr9 103765840 103765861 -38505583 + AT_rich Low_complexity Low_complexity 1 21 0 1714 164 26 0 chr9 103766361 103766629 -38504815 + AluSx SINE Alu 1 275 -37 243 0 0 0 chr9 103766633 103766660 -38504784 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2293 134 53 38 chr9 103767328 103767746 -38503698 - MSTA LTR MaLR -4 424 1 1245 177 25 0 chr9 103770449 103770652 -38500792 + AluJo SINE Alu 87 294 -18 282 240 0 13 chr9 103770694 103770769 -38500675 + MLT1L LTR MaLR 1 74 -541 185 389 225 8 chr9 103771428 103771672 -38499772 - L2 LINE L2 -464 2850 2554 188 337 0 11 chr9 103772056 103772145 -38499299 + MIR3 SINE MIR 120 207 -1 2171 116 10 0 chr9 103772162 103772465 -38498979 - AluSx SINE Alu -6 306 1 1784 138 20 0 chr9 103772469 103772767 -38498677 - L1MA7 LINE L1 0 6291 5988 24 53 0 0 chr9 103773465 103773503 -38497941 + AT_rich Low_complexity Low_complexity 1 38 0 1921 122 11 0 chr9 103773503 103773766 -38497678 + AluSx SINE Alu 43 308 -4 229 218 36 0 chr9 103774076 103774131 -38497313 - MIR SINE MIR -12 250 194 1501 194 50 7 chr9 103774134 103774417 -38497027 - AluJb SINE Alu -17 295 1 412 139 0 25 chr9 103774634 103774713 -38496731 + Alu SINE Alu 234 310 -2 26 50 0 0 chr9 103775046 103775086 -38496358 + AT_rich Low_complexity Low_complexity 1 40 0 22 80 0 0 chr9 103775882 103775932 -38495512 + AT_rich Low_complexity Low_complexity 1 50 0 229 218 36 0 chr9 103776894 103776949 -38494495 - MIR SINE MIR -12 250 194 1338 176 70 8 chr9 103776952 103777208 -38494236 - AluJb SINE Alu -7 305 34 2000 129 66 0 chr9 103778591 103778939 -38492505 + L1PA16 LINE L1 5796 6166 0 360 318 62 56 chr9 103779286 103779623 -38491821 + L1MCc LINE L1 112 450 -5973 297 109 0 0 chr9 103779910 103779956 -38491488 + L1P4 LINE L1 5808 5853 -308 2252 143 22 3 chr9 103781752 103782109 -38489335 + THE1B LTR MaLR 1 364 0 1868 161 39 0 chr9 103782387 103782717 -38488727 + MER61A LTR ERV1 1 343 0 606 71 8 134 chr9 103783629 103783756 -38487688 - L1P4 LINE L1 -404 5757 5647 751 152 31 31 chr9 103783759 103783950 -38487494 + MER4B-int LTR ERV1 4187 4377 -3743 * 1928 156 8 28 chr9 103783948 103784307 -38487137 + MER4B-int LTR ERV1 4233 4584 -2174 9427 88 16 2 chr9 103784307 103785965 -38485479 + L1P3 LINE L1 3934 5618 -536 677 59 0 0 chr9 103785972 103786057 -38485387 - AluS SINE Alu -227 86 2 2354 152 47 51 chr9 103786057 103786861 -38484583 + MER4B-int LTR ERV1 5228 6059 -632 1464 141 49 4 chr9 103786878 103787254 -38484190 + LTR47A LTR ERVL 1 443 -9 570 249 75 47 chr9 103787268 103787481 -38483963 - MLT1G1 LTR MaLR -317 278 60 222 204 0 20 chr9 103787501 103787517 -38483927 + (TG)n Simple_repeat Simple_repeat 2 17 -32 2225 101 3 14 chr9 103787517 103787814 -38483630 - AluSx SINE Alu -18 294 1 222 204 0 20 chr9 103787814 103787846 -38483598 + (TG)n Simple_repeat Simple_repeat 17 49 0 257 213 153 53 chr9 103787955 103788007 -38483437 + L1M4 LINE L1 2134 2179 -3967 1741 168 0 46 chr9 103788007 103788334 -38483110 + AluJo SINE Alu 1 312 0 257 213 153 53 chr9 103788334 103788431 -38483013 + L1M4 LINE L1 2179 2298 -3848 3210 185 72 17 chr9 103788836 103789532 -38481912 + MER50 LTR ERV1 1 734 0 635 275 67 4 chr9 103791022 103791455 -38479989 + L1ME3A LINE L1 5266 5896 -274 4283 78 19 31 chr9 103791623 103792768 -38478676 - MER11A LTR ERVK 0 1266 1 866 208 194 35 chr9 103792842 103793333 -38478111 + L1M4 LINE L1 2419 2987 -3159 404 253 53 12 chr9 103793336 103793506 -38477938 + L1M4 LINE L1 3223 3399 -2747 362 221 58 13 chr9 103793526 103793680 -38477764 + L1MC4 LINE L1 7608 7768 -274 843 132 44 13 chr9 103844027 103844186 -38427258 - MER2 DNA MER2_type -17 328 165 920 174 16 11 chr9 103844415 103844605 -38426839 - MER2 DNA MER2_type -139 206 16 296 252 72 29 chr9 103844707 103844846 -38426598 - MARNA DNA Mariner -37 549 405 271 277 116 53 chr9 103844729 103845032 -38426412 + MARNA DNA Mariner 59 380 -206 * 9575 165 33 69 chr9 103846761 103849292 -38422152 + L1MA9 LINE L1 2268 4707 -1439 2788 186 27 53 chr9 103849297 103849970 -38421474 + LTR8 LTR ERV1 37 691 0 731 208 13 0 chr9 103849970 103850129 -38421315 + L1MA9 LINE L1 5024 5184 -962 * 5108 142 26 33 chr9 103850098 103851386 -38420058 + L1MA4 LINE L1 5024 6300 0 2884 144 81 109 chr9 103851383 103851952 -38419492 + L1MA9 LINE L1 5428 6012 -300 * 2354 84 0 0 chr9 103851952 103852250 -38419194 + AluSc SINE Alu 1 298 -11 2884 144 81 109 chr9 103852250 103852469 -38418975 + L1MA9 LINE L1 6012 6191 -121 816 158 0 15 chr9 103852469 103852602 -38418842 + FLAM_C SINE Alu 1 131 -2 2884 144 81 109 chr9 103852602 103852689 -38418755 + L1MA9 LINE L1 6191 6279 -33 687 273 65 14 chr9 103852710 103852926 -38418518 + L2 LINE L2 3087 3313 0 622 207 16 8 chr9 103853159 103853280 -38418164 + MIR SINE MIR 16 137 -71 240 214 286 0 chr9 103853294 103853378 -38418066 + L2 LINE L2 3206 3313 0 299 325 206 32 chr9 103855484 103856100 -38415344 + L2 LINE L2 152 874 -2440 203 244 0 0 chr9 103856142 103856183 -38415261 - L2 LINE L2 -75 3238 3198 209 361 67 32 chr9 103856829 103857114 -38414330 + L2 LINE L2 1698 1992 -1322 2079 129 0 3 chr9 103857216 103857510 -38413934 - AluSx SINE Alu -19 293 1 924 228 46 18 chr9 103857542 103857761 -38413683 + MIR SINE MIR 34 258 -4 271 308 120 26 chr9 103857987 103858104 -38413340 + L2 LINE L2 3145 3272 0 224 386 136 19 chr9 103858121 103858385 -38413059 + L2 LINE L2 2594 2888 -426 243 0 0 0 chr9 103858393 103858420 -38413024 + (TG)n Simple_repeat Simple_repeat 2 28 0 193 339 0 0 chr9 103858852 103858911 -38412533 + L2 LINE L2 685 743 -2571 1129 158 22 84 chr9 103858911 103859184 -38412260 - MLT1A2 LTR MaLR -118 256 1 322 276 143 20 chr9 103859667 103859863 -38411581 - L1M4 LINE L1 -1543 4603 4384 200 254 17 0 chr9 103860090 103860149 -38411295 - L2 LINE L2 -96 3217 3158 467 299 53 63 chr9 103860916 103861088 -38410356 - L2 LINE L2 -1212 2102 1933 1985 90 83 7 chr9 103861088 103861366 -38410078 + AluSq SINE Alu 1 299 -14 467 299 53 63 chr9 103861366 103861511 -38409933 - L2 LINE L2 -1381 1933 1788 1788 164 16 44 chr9 103862493 103862811 -38408633 - AluJb SINE Alu -3 309 1 556 146 0 0 chr9 103866670 103866766 -38404678 - L1PA11 LINE L1 -5 6169 6074 4585 83 0 21 chr9 103866773 103867474 -38403970 - L1P LINE L1 -915 5231 4546 2488 78 3 0 chr9 103867503 103867810 -38403634 + AluSp SINE Alu 2 309 -4 344 269 74 7 chr9 103868133 103868282 -38403162 - L1ME3A LINE L1 -6 6164 6006 529 301 233 18 chr9 103868505 103869163 -38402281 - L2 LINE L2 -683 2631 1833 189 0 0 0 chr9 103869320 103869341 -38402103 + (A)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr9 103869902 103869927 -38401517 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 103870507 103870528 -38400916 + AT_rich Low_complexity Low_complexity 1 21 0 7152 40 20 0 chr9 103871039 103872047 -38399397 - L1PA5 LINE L1 0 6154 5144 182 250 50 0 chr9 103872294 103872354 -38399090 + L2 LINE L2 2608 2670 -644 343 194 60 0 chr9 103872681 103872748 -38398696 - MIR SINE MIR -118 144 74 193 213 21 21 chr9 103872925 103872972 -38398472 + L2 LINE L2 3261 3307 -6 801 233 58 19 chr9 103873226 103873250 -38398194 - MIR SINE MIR -31 231 209 1137 183 176 7 chr9 103873250 103873539 -38397905 - MER46C DNA MER2_type 0 338 1 801 233 58 19 chr9 103873539 103873720 -38397724 - MIR SINE MIR -53 209 18 274 258 134 21 chr9 103873746 103873843 -38397601 + MIR SINE MIR 29 137 -71 312 271 31 10 chr9 103874192 103874288 -38397156 + CT-rich Low_complexity Low_complexity 4 101 0 509 268 42 28 chr9 103875265 103875407 -38396037 + MIR3 SINE MIR 24 167 -41 324 261 114 57 chr9 103875443 103875688 -38395756 - HAL1 LINE L1 -2 2505 2247 23 33 0 0 chr9 103875699 103875729 -38395715 + AT_rich Low_complexity Low_complexity 1 30 0 655 236 17 29 chr9 103876221 103876395 -38395049 - MER5B DNA MER1_type -2 176 5 681 228 47 7 chr9 103877584 103877733 -38393711 + MER5A DNA MER1_type 1 155 -34 1624 147 17 0 chr9 103877733 103878025 -38393419 + L1MA4 LINE L1 5999 6295 -5 212 219 0 0 chr9 103878050 103878091 -38393353 + MER5A DNA MER1_type 147 187 -2 2165 124 0 13 chr9 103879254 103879580 -38391864 + AluSx SINE Alu 1 312 0 305 250 83 33 chr9 103881136 103881256 -38390188 - MIR3 SINE MIR -1 207 82 337 284 69 10 chr9 103881393 103881495 -38389949 - MIR SINE MIR -82 126 19 394 295 0 0 chr9 103883000 103883105 -38388339 - MIR SINE MIR -108 154 50 318 302 31 10 chr9 103883153 103883249 -38388195 - MIR SINE MIR -157 105 8 579 278 99 5 chr9 103883300 103883491 -38387953 - MIR SINE MIR -29 233 25 286 293 85 0 chr9 103883833 103883915 -38387529 - L2 LINE L2 -16 3256 3168 348 248 92 53 chr9 103883920 103884086 -38387358 + MIR SINE MIR 25 193 -61 1688 149 34 68 chr9 103884254 103884577 -38386867 - AluJo SINE Alu 0 312 1 259 244 171 0 chr9 103884590 103884672 -38386772 - MIR SINE MIR -71 191 96 339 229 48 48 chr9 103887072 103887177 -38384267 - MIR SINE MIR -95 167 63 197 233 82 27 chr9 103887573 103887646 -38383798 + MIR SINE MIR 83 159 -103 406 279 71 30 chr9 103887699 103887896 -38383548 - MIR SINE MIR 0 262 58 300 239 64 28 chr9 103888079 103888188 -38383256 + MIR SINE MIR 40 152 -110 180 240 0 20 chr9 103888233 103888283 -38383161 + L2 LINE L2 3263 3311 -2 1864 169 3 10 chr9 103888877 103889191 -38382253 - AluJo SINE Alu 0 312 1 334 219 23 0 chr9 103889292 103889387 -38382057 - MIR3 SINE MIR -9 199 102 515 253 40 53 chr9 103891062 103891212 -38380232 - MIR3 SINE MIR -11 197 50 22 56 0 0 chr9 103891478 103891514 -38379930 + AT_rich Low_complexity Low_complexity 1 36 0 403 292 129 9 chr9 103892812 103893045 -38378399 - MIR SINE MIR 0 262 2 201 74 0 0 chr9 103893389 103893416 -38378028 + (TTTTTG)n Simple_repeat Simple_repeat 5 31 0 344 311 61 0 chr9 103893483 103893615 -38377829 + MIR SINE MIR 80 219 -43 183 80 0 0 chr9 103894344 103894369 -38377075 + (TTG)n Simple_repeat Simple_repeat 3 27 0 266 286 152 9 chr9 103894480 103894585 -38376859 + L2 LINE L2 3153 3272 0 3239 112 16 6 chr9 103894837 103895345 -38376099 - L1MB2 LINE L1 -7 6164 5652 425 168 11 21 chr9 103895345 103895433 -38376011 - L1MB8 LINE L1 0 6178 6085 249 305 59 57 chr9 103896195 103896379 -38375065 + MIR SINE MIR 36 216 -46 288 130 0 0 chr9 103896447 103896493 -38374951 + (CA)n Simple_repeat Simple_repeat 1 46 0 264 293 177 28 chr9 103896565 103896780 -38374664 - MIR SINE MIR -12 250 4 1620 132 89 0 chr9 103896929 103897353 -38374091 + AluSg SINE Alu 1 447 0 650 335 20 8 chr9 103897770 103898015 -38373429 + MIR SINE MIR 2 249 -13 22 66 0 16 chr9 103899012 103899037 -38372407 + AT_rich Low_complexity Low_complexity 1 25 -35 2797 194 9 2 chr9 103899037 103899598 -38371846 + L1MB7 LINE L1 5611 6175 -9 22 66 0 16 chr9 103899598 103899633 -38371811 + AT_rich Low_complexity Low_complexity 25 60 0 207 0 0 0 chr9 103900180 103900203 -38371241 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2682 86 0 11 chr9 103901602 103901973 -38369471 - THE1C LTR MaLR 0 375 9 2296 157 20 8 chr9 103901978 103902379 -38369065 - MSTB LTR MaLR -20 406 1 190 191 16 16 chr9 103902621 103902684 -38368760 + (TA)n Simple_repeat Simple_repeat 1 63 0 393 297 155 30 chr9 103903231 103903638 -38367806 - L1M4 LINE L1 -1377 4769 4312 1666 118 8 16 chr9 103903648 103903914 -38367530 + AluJb SINE Alu 64 312 0 833 97 34 29 chr9 103903967 103904142 -38367302 + GA-rich Low_complexity Low_complexity 3 178 0 182 65 65 0 chr9 103904247 103904278 -38367166 + GA-rich Low_complexity Low_complexity 2 34 0 301 220 93 8 chr9 103904285 103904403 -38367041 + L1M4 LINE L1 3073 3200 -2946 445 209 17 9 chr9 103905300 103905415 -38366029 - Charlie5 DNA MER1_type -2496 116 1 571 226 268 13 chr9 103905458 103905764 -38365680 + Charlie2 DNA MER1_type 2443 2826 -36 924 196 24 0 chr9 103905804 103905972 -38365472 - FAM SINE Alu -3 172 1 604 186 0 0 chr9 103906437 103906534 -38364910 + MER50 LTR ERV1 638 734 0 740 277 67 4 chr9 103908024 103908457 -38362987 + L1ME3A LINE L1 5266 5896 -274 4630 115 26 46 chr9 103908631 103909770 -38361674 - MER11A LTR ERVK -5 1066 1 1074 208 194 35 chr9 103909844 103910335 -38361109 + L1M4 LINE L1 2419 2987 -3159 472 251 73 11 chr9 103910338 103910517 -38360927 + L1M4 LINE L1 3223 3412 -2734 304 293 58 17 chr9 103910528 103910702 -38360742 + L1MC4 LINE L1 7608 7788 -254 271 172 152 55 chr9 103911068 103911213 -38360231 + L1ME4a LINE L1 5718 5876 -245 367 179 146 16 chr9 103911267 103911390 -38360054 + L1ME4a LINE L1 5980 6118 -3 227 263 0 18 chr9 103911882 103911939 -38359505 + MER5B DNA MER1_type 43 98 -80 1188 105 0 35 chr9 103912262 103912434 -38359010 - AluSq SINE Alu -147 166 1 291 219 57 57 chr9 103912434 103912539 -38358905 - LTR45B LTR ERV1 -71 418 314 189 260 164 14 chr9 103914489 103914562 -38356882 - L2 LINE L2 0 3272 3189 378 0 0 0 chr9 103914628 103914670 -38356774 + (TA)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr9 103914700 103914727 -38356717 + AT_rich Low_complexity Low_complexity 1 27 0 219 69 0 0 chr9 103914744 103914773 -38356671 + (CA)n Simple_repeat Simple_repeat 2 30 0 269 224 0 0 chr9 103915220 103915269 -38356175 + MLT1J1 LTR MaLR 346 394 -52 615 280 130 74 chr9 103916519 103917072 -38354372 + MLT1L LTR MaLR 24 607 -8 408 304 14 36 chr9 103918227 103918365 -38353079 + L2 LINE L2 3133 3267 -5 216 0 0 0 chr9 103919436 103919460 -38351984 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 758 300 96 34 chr9 103919995 103920512 -38350932 + L2 LINE L2 2748 3294 -19 208 152 0 0 chr9 103920684 103920717 -38350727 - L2 LINE L2 -346 2967 2935 393 329 22 7 chr9 103922225 103922362 -38349082 + MIR3 SINE MIR 9 147 -61 736 281 35 31 chr9 103922876 103923104 -38348340 - MIR SINE MIR -14 248 20 249 57 0 0 chr9 103925320 103925355 -38346089 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 560 264 109 6 chr9 103926103 103926277 -38345167 + MIR SINE MIR 4 195 -67 463 239 122 127 chr9 103926631 103927032 -38344412 + MLT1J2 LTR MaLR 43 441 -9 1025 276 26 39 chr9 103928461 103928616 -38342828 - MLT1I LTR MaLR -27 382 231 198 0 0 0 chr9 103928616 103928638 -38342806 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1025 276 26 39 chr9 103928638 103928790 -38342654 - MLT1I LTR MaLR -178 231 79 1800 156 0 3 chr9 103929147 103929463 -38341981 + AluJb SINE Alu 1 315 0 221 290 66 67 chr9 103930256 103930417 -38341027 + MIR3 SINE MIR 1 160 -67 2034 97 4 0 chr9 103930420 103930689 -38340755 + AluSc SINE Alu 3 272 -37 267 324 77 35 chr9 103930771 103930941 -38340503 + L2 LINE L2 2680 2856 -458 198 286 83 48 chr9 103931385 103931469 -38339975 + L2 LINE L2 3184 3270 -2 184 195 24 0 chr9 103931475 103931516 -38339928 + MIR SINE MIR 101 142 -66 206 214 71 0 chr9 103931567 103931609 -38339835 - L2 LINE L2 -15 3298 3254 * 435 253 296 0 chr9 103931578 103931764 -38339680 - MIR SINE MIR -20 242 2 288 186 49 20 chr9 103931850 103931952 -38339492 + (TA)n Simple_repeat Simple_repeat 2 106 0 421 280 42 63 chr9 103932251 103932440 -38339004 + L1MC/D LINE L1 5543 5727 -2081 260 212 26 18 chr9 103932457 103932570 -38338874 + GA-rich Low_complexity Low_complexity 4 117 0 1294 201 103 62 chr9 103932700 103933058 -38338386 + MLT1A2 LTR MaLR 1 373 -1 459 200 10 33 chr9 103933520 103933630 -38337814 - L1ME1 LINE L1 -4 6162 6067 387 281 57 2 chr9 103933746 103933921 -38337523 + L1MC/D LINE L1 5265 5449 -719 1186 200 85 4 chr9 103935960 103936220 -38335224 + MER58B DNA MER1_type 30 310 -31 582 263 77 24 chr9 103936653 103936862 -38334582 + MIR SINE MIR 43 262 0 * 640 231 59 32 chr9 103936859 103936915 -38334529 - L2 LINE L2 0 3313 3260 1222 180 10 0 chr9 103936915 103937121 -38334323 - MER3 DNA MER1_type 0 209 2 640 231 59 32 chr9 103937121 103937250 -38334194 - L2 LINE L2 -53 3260 3123 466 231 301 20 chr9 103937248 103937451 -38333993 - MIR SINE MIR 0 262 3 * 1296 279 89 23 chr9 103937619 103938046 -38333398 - LTR33 LTR ERVL -64 457 3 2134 120 0 0 chr9 103938425 103938741 -38332703 - AluSx SINE Alu 0 316 1 1850 334 51 19 chr9 103938741 103939832 -38331612 - ERVL LTR ERVL -522 5242 4075 1124 203 94 116 chr9 103939832 103940064 -38331380 - L1ME LINE L1 -3206 2874 2638 324 0 0 0 chr9 103940064 103940100 -38331344 + (TA)n Simple_repeat Simple_repeat 2 37 0 1124 203 94 116 chr9 103940100 103940451 -38330993 - L1ME LINE L1 -3442 2638 2304 1949 73 8 0 chr9 103940451 103940697 -38330747 - AluY SINE Alu -18 293 46 1124 203 94 116 chr9 103940697 103940748 -38330696 - L1ME LINE L1 -3776 2304 2253 405 228 55 50 chr9 103940754 103940956 -38330488 - L1ME LINE L1 -5411 659 457 2477 64 0 3 chr9 103941224 103941521 -38329923 + AluSc SINE Alu 1 296 -13 331 264 35 0 chr9 103941593 103941680 -38329764 - L1ME LINE L1 -5604 466 377 * 479 127 28 5 chr9 103941671 103941768 -38329676 + L1MA4A LINE L1 6203 6299 -1 1250 269 87 0 chr9 103941770 103942105 -38329339 - MER31-int LTR ERV1 -739 4132 3769 545 252 0 34 chr9 103942103 103942250 -38329194 - MER31-int LTR ERV1 -525 4411 4270 * 258 281 12 49 chr9 103942345 103942427 -38329017 - MER31-int LTR ERV1 -974 3962 3884 1922 239 80 35 chr9 103942435 103943213 -38328231 - MER31-int LTR ERV1 -1229 5102 4290 494 180 107 9 chr9 103943209 103943387 -38328057 - MER31-int LTR ERV1 -1898 3038 2882 * 399 72 93 21 chr9 103943396 103943635 -38327809 + (TA)n Simple_repeat Simple_repeat 1 256 0 213 191 16 63 chr9 103944221 103944284 -38327160 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 2280 106 66 26 chr9 103944284 103944633 -38326811 + THE1B LTR MaLR 2 364 0 12376 94 10 1 chr9 103944633 103946198 -38325246 + THE1B-int LTR MaLR 1 1580 0 2211 135 79 20 chr9 103946198 103946539 -38324905 + THE1B LTR MaLR 1 361 -3 306 106 0 0 chr9 103946539 103946586 -38324858 + (CA)n Simple_repeat Simple_repeat 2 48 0 581 269 49 62 chr9 103946846 103946979 -38324465 - L1ME4a LINE L1 -204 5917 5784 195 42 0 0 chr9 103946979 103947003 -38324441 + (TA)n Simple_repeat Simple_repeat 2 25 0 581 269 49 62 chr9 103947003 103947022 -38324422 - L1ME4a LINE L1 -337 5784 5766 2736 139 30 10 chr9 103947022 103947424 -38324020 + LTR57 LTR ERVL 2 411 0 581 269 49 62 chr9 103947424 103947575 -38323869 - L1ME4a LINE L1 -355 5766 5617 516 226 107 40 chr9 103947587 103947764 -38323680 + MLT1J LTR MaLR 1 189 -322 2230 114 3 0 chr9 103947784 103948092 -38323352 + AluSg SINE Alu 2 310 0 4438 196 34 53 chr9 103948199 103949182 -38322262 - MER45B DNA AcHobo -76 964 1 354 200 18 55 chr9 103949190 103949300 -38322144 + MLT1J LTR MaLR 391 496 -15 296 259 302 11 chr9 103949526 103949715 -38321729 - MIR SINE MIR -6 256 13 218 211 0 19 chr9 103950185 103950237 -38321207 + CT-rich Low_complexity Low_complexity 3 53 0 198 71 0 0 chr9 103950365 103950393 -38321051 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 203 180 60 0 chr9 103950453 103950503 -38320941 + (CATA)n Simple_repeat Simple_repeat 2 54 0 240 148 49 66 chr9 103950594 103950655 -38320789 + L1ME4a LINE L1 5969 6028 -93 2287 96 0 3 chr9 103950660 103950951 -38320493 - AluSx SINE Alu -22 290 1 603 221 117 0 chr9 103950997 103951151 -38320293 + MER5B DNA MER1_type 1 172 -6 316 299 76 43 chr9 103951360 103951544 -38319900 + MIR SINE MIR 22 211 -51 242 324 81 36 chr9 103951674 103951785 -38319659 - L2 LINE L2 -1 3271 3156 831 141 55 37 chr9 103952522 103952685 -38318759 - FRAM SINE Alu -11 165 1 2768 10 0 0 chr9 103952870 103953170 -38318274 - AluYa5 SINE Alu -11 300 1 1234 220 91 76 chr9 103953978 103954357 -38317087 + L2 LINE L2 2740 3121 -192 2284 107 0 0 chr9 103954357 103954655 -38316789 - AluSx SINE Alu -9 303 6 1234 220 91 76 chr9 103954655 103954851 -38316593 + L2 LINE L2 3121 3313 0 653 220 25 19 chr9 103955603 103955620 -38315824 - L1MA10 LINE L1 0 6334 6318 1728 218 34 45 chr9 103955620 103956092 -38315352 - L1ME1 LINE L1 -5 6161 5695 195 213 21 21 chr9 103956494 103956541 -38314903 - L2 LINE L2 -6 3307 3261 342 194 60 0 chr9 103956718 103956785 -38314659 + MIR SINE MIR 74 144 -118 204 233 50 0 chr9 103957112 103957172 -38314272 - L2 LINE L2 -644 2670 2608 7200 38 11 7 chr9 103957421 103958428 -38313016 + L1PA5 LINE L1 5144 6154 0 21 0 0 0 chr9 103958939 103958960 -38312484 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 103959538 103959562 -38311882 + AT_rich Low_complexity Low_complexity 1 24 0 529 301 233 18 chr9 103960298 103960956 -38310488 + L2 LINE L2 1833 2631 -683 344 269 74 7 chr9 103961179 103961328 -38310116 + L1ME3A LINE L1 6006 6164 -6 2454 84 3 0 chr9 103961651 103961959 -38309485 - AluSp SINE Alu -4 309 1 201 333 0 18 chr9 103962399 103962456 -38308988 - MER5B DNA MER1_type -73 105 50 1705 192 44 10 chr9 103963299 103963390 -38308054 + MLT2D LTR ERVL 1 87 -310 255 31 0 0 chr9 103963390 103963422 -38308022 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1705 192 44 10 chr9 103963422 103963700 -38307744 + MLT2D LTR ERVL 87 362 -35 405 0 0 0 chr9 103963700 103963745 -38307699 + (CA)n Simple_repeat Simple_repeat 2 46 0 1705 192 44 10 chr9 103963745 103963776 -38307668 + MLT2D LTR ERVL 362 390 -7 2158 141 0 3 chr9 103964493 103964805 -38306639 + AluSx SINE Alu 2 312 0 375 257 29 21 chr9 103964805 103964945 -38306499 - Charlie8 DNA MER1_type -2202 215 75 188 256 0 0 chr9 103965820 103965859 -38305585 + MER5B DNA MER1_type 139 177 -1 606 71 8 134 chr9 103966636 103966763 -38304681 - L1P4 LINE L1 -404 5757 5647 751 152 31 31 chr9 103966766 103966957 -38304487 + MER4B-int LTR ERV1 4187 4377 -3743 * 1928 156 8 28 chr9 103966955 103967314 -38304130 + MER4B-int LTR ERV1 4233 4584 -2174 9401 89 16 2 chr9 103967314 103968972 -38302472 + L1P3 LINE L1 3934 5618 -536 677 59 0 0 chr9 103968979 103969064 -38302380 - AluS SINE Alu -226 86 2 2354 152 47 51 chr9 103969064 103969868 -38301576 + MER4B-int LTR ERV1 5228 6059 -632 1483 141 49 4 chr9 103969885 103970261 -38301183 + LTR47A LTR ERVL 1 443 -9 570 249 75 47 chr9 103970275 103970488 -38300956 - MLT1G1 LTR MaLR -317 278 60 222 204 0 20 chr9 103970508 103970524 -38300920 + (TG)n Simple_repeat Simple_repeat 2 17 -32 2225 101 3 14 chr9 103970524 103970821 -38300623 - AluSx SINE Alu -18 294 1 222 204 0 20 chr9 103970821 103970853 -38300591 + (TG)n Simple_repeat Simple_repeat 17 49 0 358 208 138 53 chr9 103970900 103971004 -38300440 + L1MEc LINE L1 2177 2271 -3944 1741 168 0 46 chr9 103971004 103971331 -38300113 + AluJo SINE Alu 1 312 0 358 208 138 53 chr9 103971331 103971428 -38300016 + L1MEc LINE L1 2271 2367 -3848 912 133 87 0 chr9 103971833 103972006 -38299438 + MER50 LTR ERV1 1 188 -546 1809 187 73 47 chr9 103972108 103972658 -38298786 - MER65A-int LTR ERV1 -2899 1972 1409 1061 218 13 50 chr9 103972754 103973071 -38298373 - MER65A-int LTR ERV1 -3685 1186 882 272 106 21 0 chr9 103973088 103973135 -38298309 - LTR57-int LTR ERVL -4986 357 310 * 810 228 87 77 chr9 103973095 103973743 -38297701 - MER65A-int LTR ERV1 -4097 774 54 2399 157 39 9 chr9 103973795 103974227 -38297217 - MER65A LTR ERV1 0 445 1 1104 230 3 26 chr9 103974252 103974561 -38296883 - L1MC4 LINE L1 -153 7889 7588 1758 221 82 29 chr9 103974562 103975038 -38296406 - MLT1D LTR MaLR -2 503 3 449 271 72 72 chr9 103977573 103977794 -38293650 + MLT1J LTR MaLR 248 468 -43 21 0 0 0 chr9 103977927 103977948 -38293496 + AT_rich Low_complexity Low_complexity 1 21 0 1512 137 80 160 chr9 103978308 103978847 -38292597 + LTR54B LTR ERV1 1 496 -2 454 271 60 13 chr9 103978965 103979277 -38292167 + MER4-int LTR ERV1 318 2245 -4086 481 339 84 32 chr9 103981478 103981917 -38289527 + MER4-int LTR ERV1 2538 2999 -3802 287 338 0 0 chr9 103982741 103982815 -38288629 + MER4-int LTR ERV1 3796 3869 -2932 9457 96 18 42 chr9 103983017 103984508 -38286936 - Charlie3 DNA MER1_type -4 2706 1251 18070 98 12 24 chr9 103985163 103987878 -38283566 - Charlie3 DNA MER1_type -4 2706 26 1026 218 73 8 chr9 103988448 103988682 -38282762 + MER4-int LTR ERV1 6892 7140 -397 2099 126 98 59 chr9 103988684 103989161 -38282283 + LTR54B LTR ERV1 1 496 -2 192 77 0 0 chr9 103989241 103989267 -38282177 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2603 184 22 138 chr9 103990194 103990776 -38280668 - MLT2B3 LTR ERVL 0 515 1 258 161 0 32 chr9 103991073 103991135 -38280309 + MER4-int LTR ERV1 1111 1170 -5428 1349 199 133 18 chr9 103991600 103991992 -38279452 - MLT1D LTR MaLR 0 505 69 245 246 14 0 chr9 103991993 103992062 -38279382 + L1M4c LINE L1 1580 1649 -4735 1081 157 88 4 chr9 103992090 103992351 -38279093 - Tigger6b DNA MER2_type -1 1596 1314 1146 169 58 0 chr9 103992376 103992636 -38278808 + L1MA7 LINE L1 6013 6287 -4 250 136 85 0 chr9 103992642 103992701 -38278743 - Tigger6b DNA MER2_type -264 1333 1270 4435 170 59 10 chr9 103992751 103993716 -38277728 - Tigger6b DNA MER2_type -585 1012 1 2557 136 18 5 chr9 103994450 103994846 -38276598 - L1PA16 LINE L1 -9 6157 5757 13252 168 29 34 chr9 103994853 103995708 -38275736 - L1PB1 LINE L1 -8 6859 6002 1901 142 0 3 chr9 103995708 103996020 -38275424 - AluSx SINE Alu 0 311 1 13252 168 29 34 chr9 103996020 104000740 -38270704 - L1PB1 LINE L1 -865 6002 1339 2111 245 96 14 chr9 104000746 104001549 -38269895 - L1PB1 LINE L1 -5987 876 8 1253 114 10 0 chr9 104001564 104001765 -38269679 - L1P4 LINE L1 -399 5767 5565 2136 102 31 3 chr9 104001989 104002283 -38269161 + AluSq SINE Alu 4 305 -8 257 269 21 28 chr9 104002471 104002612 -38268832 - L1ME LINE L1 -404 5717 5578 2023 141 3 10 chr9 104002997 104003310 -38268134 - AluSx SINE Alu -1 311 1 21 71 0 0 chr9 104004209 104004251 -38267193 + AT_rich Low_complexity Low_complexity 1 42 0 210 343 50 10 chr9 104004685 104004784 -38266660 + L2 LINE L2 198 300 -3014 2096 83 57 26 chr9 104005356 104005705 -38265739 - L1PA13 LINE L1 -3 6160 5801 2457 80 3 0 chr9 104005715 104006016 -38265428 - AluSq SINE Alu -11 302 1 201 333 0 18 chr9 104006456 104006513 -38264931 - MER5B DNA MER1_type -73 105 50 1705 192 44 10 chr9 104007356 104007447 -38263997 + MLT2D LTR ERVL 1 87 -310 255 31 0 0 chr9 104007447 104007479 -38263965 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1705 192 44 10 chr9 104007479 104007757 -38263687 + MLT2D LTR ERVL 87 362 -35 405 0 0 0 chr9 104007757 104007802 -38263642 + (CA)n Simple_repeat Simple_repeat 2 46 0 1705 192 44 10 chr9 104007802 104007833 -38263611 + MLT2D LTR ERVL 362 390 -7 235 232 171 24 chr9 104008031 104008113 -38263331 - MLT1K LTR MaLR -172 416 323 2206 138 0 0 chr9 104008550 104008861 -38262583 + AluSx SINE Alu 2 312 0 416 257 29 21 chr9 104008861 104009001 -38262443 - Charlie8 DNA MER1_type -2191 226 86 186 256 0 0 chr9 104009876 104009915 -38261529 + MER5B DNA MER1_type 139 177 -1 267 316 32 0 chr9 104010896 104010991 -38260453 - MIR SINE MIR -66 142 45 354 311 33 26 chr9 104011077 104011228 -38260216 - MIR SINE MIR -19 243 92 2503 53 0 0 chr9 104011467 104011768 -38259676 - AluY SINE Alu -10 301 1 21 0 0 0 chr9 104011788 104011809 -38259635 + AT_rich Low_complexity Low_complexity 1 21 0 638 284 83 0 chr9 104012466 104012684 -38258760 + MIR SINE MIR 15 250 -12 228 328 0 17 chr9 104012708 104012766 -38258678 - L2 LINE L2 -60 3212 3156 272 263 26 53 chr9 104013146 104013222 -38258222 - L2 LINE L2 0 3313 3240 266 307 13 0 chr9 104013341 104013416 -38258028 - L2 LINE L2 -536 2778 2703 1531 255 166 52 chr9 104013759 104014532 -38256912 - L2 LINE L2 -684 2630 1770 2472 237 86 4 chr9 104014532 104015229 -38256215 - L2 LINE L2 -2256 1058 305 855 324 95 39 chr9 104015590 104016484 -38254960 - L2 LINE L2 -1826 1488 545 1556 181 40 10 chr9 104017629 104017927 -38253517 - AluJo SINE Alu -3 309 3 23 0 0 0 chr9 104017929 104017952 -38253492 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr9 104018202 104018238 -38253206 + AT_rich Low_complexity Low_complexity 1 36 0 252 326 47 0 chr9 104019025 104019111 -38252333 + L2 LINE L2 3183 3272 0 188 372 64 0 chr9 104020248 104020342 -38251102 - L2 LINE L2 -1 3271 3172 442 295 29 52 chr9 104020342 104020515 -38250929 - MER5B DNA MER1_type -6 172 4 559 208 9 0 chr9 104020847 104020953 -38250491 - FLAM_C SINE Alu -36 107 1 2404 80 0 3 chr9 104020985 104021284 -38250160 + AluSx SINE Alu 1 298 -14 345 341 24 8 chr9 104022018 104022141 -38249303 - MIR SINE MIR -118 144 20 820 274 126 22 chr9 104022444 104022758 -38248686 - MLT1H1 LTR MaLR -210 385 1 2624 166 68 2 chr9 104024175 104024688 -38246756 + L1 LINE L1 3912 4458 -1688 186 143 0 0 chr9 104024704 104024739 -38246705 + (TG)n Simple_repeat Simple_repeat 1 35 0 2634 128 54 0 chr9 104024739 104025185 -38246259 + L1MA9 LINE L1 5838 6307 -5 7986 50 22 2 chr9 104025592 104026579 -38244865 - LTR13 LTR ERVK 0 1007 1 321 381 79 48 chr9 104027432 104027786 -38243658 - L2 LINE L2 -2 3270 2906 273 172 32 21 chr9 104029108 104029201 -38242243 + GA-rich Low_complexity Low_complexity 4 97 0 356 256 0 83 chr9 104030166 104030299 -38241145 - MER5A DNA MER1_type -23 166 45 2256 83 3 23 chr9 104032231 104032533 -38238911 + AluSp SINE Alu 1 296 -17 392 319 106 42 chr9 104032637 104033157 -38238287 + L1MC/D LINE L1 4497 5049 -1097 667 251 55 23 chr9 104033223 104033578 -38237866 + L1MC/D LINE L1 5127 5487 -749 233 256 116 25 chr9 104034202 104034323 -38237121 + L1MC/D LINE L1 5659 5790 -2018 2229 96 11 56 chr9 104034579 104034956 -38236488 - L1PB1 LINE L1 0 6151 5792 4311 169 13 4 chr9 104034961 104036245 -38235199 - L1PB1 LINE L1 -490 5661 4366 770 209 60 0 chr9 104036379 104036594 -38234850 + L1MA9 LINE L1 6060 6287 -25 371 314 94 25 chr9 104036718 104036877 -38234567 - MIR3 SINE MIR -3 205 36 4364 137 22 37 chr9 104037306 104038109 -38233335 - L1MA4 LINE L1 -5 6499 5709 188 86 100 0 chr9 104038116 104038186 -38233258 + (TA)n Simple_repeat Simple_repeat 2 78 0 13483 182 45 6 chr9 104038186 104041161 -38230283 - L1MA4 LINE L1 -743 5607 2584 439 333 7 0 chr9 104041157 104041307 -38230137 - L1MA4 LINE L1 -5028 1253 1103 * 836 362 34 17 chr9 104041751 104042226 -38229218 - L1MA4 LINE L1 -5797 484 2 368 311 151 47 chr9 104042656 104042974 -38228470 + MLT1H LTR MaLR 1 351 -198 367 235 27 134 chr9 104043201 104043388 -38228056 + L2 LINE L2 2920 3086 -186 21 71 0 0 chr9 104043515 104043557 -38227887 + AT_rich Low_complexity Low_complexity 1 42 0 288 0 0 0 chr9 104044071 104044103 -38227341 + (TG)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr9 104044161 104044182 -38227262 + AT_rich Low_complexity Low_complexity 1 21 0 497 284 37 32 chr9 104044500 104044690 -38226754 - MIR SINE MIR -35 227 37 22 0 0 0 chr9 104046494 104046516 -38224928 + AT_rich Low_complexity Low_complexity 1 22 0 233 164 0 18 chr9 104046856 104046911 -38224533 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 258 172 52 43 chr9 104046944 104047060 -38224384 + (TA)n Simple_repeat Simple_repeat 2 118 0 261 224 0 17 chr9 104048213 104048271 -38223173 + MIR SINE MIR 75 131 -77 200 270 279 0 chr9 104048634 104048745 -38222699 + L3b LINE CR1 1217 1358 -225 405 306 94 6 chr9 104049136 104049296 -38222148 - MER5A DNA MER1_type -3 186 13 454 280 161 11 chr9 104050708 104050894 -38220550 + MIR SINE MIR 49 262 0 393 102 0 0 chr9 104051321 104051380 -38220064 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 445 239 5 27 chr9 104051873 104052057 -38219387 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 457 226 0 29 chr9 104051941 104052189 -38219255 + (TATG)n Simple_repeat Simple_repeat 1 240 0 308 314 132 8 chr9 104053046 104053167 -38218277 - L2 LINE L2 0 3272 3137 252 279 23 70 chr9 104053197 104053326 -38218118 - MIR SINE MIR -112 150 28 252 259 0 0 chr9 104053428 104053486 -38217958 - MARNA DNA Mariner -92 494 437 376 287 11 0 chr9 104053486 104053573 -38217871 - L2 LINE L2 -1 3271 3184 935 278 107 15 chr9 104054001 104054534 -38216910 - L1ME4a LINE L1 -135 5986 5405 231 324 18 27 chr9 104054946 104055057 -38216387 - MIR SINE MIR -15 247 138 200 345 0 0 chr9 104055052 104055107 -38216337 + MIR SINE MIR 208 262 0 * 29 60 0 0 chr9 104055179 104055229 -38216215 + AT_rich Low_complexity Low_complexity 1 50 0 352 290 19 0 chr9 104055236 104055343 -38216101 - L1ME4a LINE L1 -1524 4622 4514 445 322 140 23 chr9 104055686 104056037 -38215407 + L2 LINE L2 2921 3312 -1 183 80 0 0 chr9 104056440 104056465 -38214979 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 104057704 104057725 -38213719 + AT_rich Low_complexity Low_complexity 1 21 0 341 83 0 0 chr9 104058408 104058456 -38212988 + MADE1 DNA Mariner 33 80 0 2181 89 10 0 chr9 104058937 104059241 -38212203 + L1PA13 LINE L1 5851 6157 -6 21 0 0 0 chr9 104060777 104060798 -38210646 + AT_rich Low_complexity Low_complexity 1 21 0 201 94 0 0 chr9 104064107 104064139 -38207305 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 360 299 103 60 chr9 104064681 104064865 -38206579 + MIR SINE MIR 19 210 -52 441 304 28 90 chr9 104066353 104066708 -38204736 - L2 LINE L2 -42 3230 2898 559 335 120 4 chr9 104067076 104067309 -38204135 + L3 LINE CR1 803 1062 -515 204 344 52 39 chr9 104067416 104067570 -38203874 - L2 LINE L2 -438 2876 2721 29 0 0 0 chr9 104067952 104067981 -38203463 + AT_rich Low_complexity Low_complexity 1 29 0 518 232 80 33 chr9 104068060 104068211 -38203233 - L2 LINE L2 -2 3311 3154 187 296 70 0 chr9 104070683 104070754 -38200690 + L2 LINE L2 3194 3269 -3 1123 301 138 9 chr9 104072243 104072899 -38198545 + L2 LINE L2 2572 3313 0 2399 100 0 0 chr9 104073553 104073853 -38197591 + AluSx SINE Alu 1 300 -12 234 0 0 0 chr9 104074442 104074468 -38196976 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 38 39 0 0 chr9 104075302 104075354 -38196090 + AT_rich Low_complexity Low_complexity 1 52 0 27 0 0 0 chr9 104075424 104075451 -38195993 + AT_rich Low_complexity Low_complexity 1 27 0 1968 156 0 7 chr9 104075497 104075798 -38195646 - AluSx SINE Alu -13 299 1 2320 71 0 0 chr9 104077035 104077368 -38194076 - AluSg SINE Alu 0 333 1 21 36 0 0 chr9 104077500 104077528 -38193916 + AT_rich Low_complexity Low_complexity 1 28 0 291 225 50 25 chr9 104077944 104078024 -38193420 + MIR3 SINE MIR 81 162 -46 619 259 99 17 chr9 104078090 104078328 -38193116 + MIR SINE MIR 4 261 -1 361 253 167 12 chr9 104079077 104079239 -38192205 - MIR SINE MIR -44 218 32 272 220 120 10 chr9 104079855 104079955 -38191489 + MER63A DNA MER1_type 96 206 -4 275 267 33 0 chr9 104081747 104081837 -38189607 + G-rich Low_complexity Low_complexity 5 97 0 456 317 68 5 chr9 104081935 104082140 -38189304 + L2 LINE L2 3095 3312 -1 521 222 145 0 chr9 104083580 104083697 -38187747 - MER45A DNA AcHobo -44 134 1 276 243 56 47 chr9 104084317 104084424 -38187020 - MER112 DNA MER1_type -12 248 141 809 153 203 8 chr9 104084773 104085024 -38186420 - MER33 DNA MER1_type -32 292 1 372 243 107 21 chr9 104085172 104085312 -38186132 + MIR SINE MIR 54 205 -57 375 288 49 66 chr9 104085726 104085912 -38185532 + MIR SINE MIR 20 206 -56 522 259 132 31 chr9 104086698 104086926 -38184518 + MIR SINE MIR 11 261 -1 611 336 63 67 chr9 104087005 104087466 -38183978 - L2 LINE L2 0 3272 2814 294 327 152 23 chr9 104087815 104088118 -38183326 - L2 LINE L2 -357 2957 2616 1959 200 19 32 chr9 104088191 104088661 -38182783 - MLT1C LTR MaLR -3 464 1 238 315 130 20 chr9 104090080 104090226 -38181218 - MIR SINE MIR -70 192 31 420 168 13 47 chr9 104090834 104090983 -38180461 + GA-rich Low_complexity Low_complexity 4 147 0 312 326 35 0 chr9 104091863 104091949 -38179495 - MIR SINE MIR -61 147 59 278 320 33 0 chr9 104092635 104092737 -38178707 - MIR SINE MIR -81 127 22 787 303 172 5 chr9 104092915 104093350 -38178094 + LTR33 LTR ERVL 2 509 -12 216 0 0 0 chr9 104093595 104093619 -38177825 + (T)n Simple_repeat Simple_repeat 1 24 0 328 311 42 0 chr9 104094009 104094128 -38177316 + MER94 DNA DNA 4 127 -7 528 342 89 0 chr9 104095288 104095513 -38175931 - MIR SINE MIR -17 245 1 696 260 26 52 chr9 104095686 104095955 -38175489 + MLT1L LTR MaLR 5 266 -349 397 287 138 11 chr9 104096033 104096214 -38175230 - MIR SINE MIR -27 235 32 752 200 0 0 chr9 104096562 104096687 -38174757 - FLAM_C SINE Alu -18 125 1 554 75 28 19 chr9 104097259 104097366 -38174078 + (TCTA)n Simple_repeat Simple_repeat 2 109 0 2314 101 0 0 chr9 104097505 104097802 -38173642 + AluY SINE Alu 1 297 -14 1573 189 69 23 chr9 104097818 104098210 -38173234 - MLT1C LTR MaLR -52 415 6 1694 291 113 29 chr9 104098297 104099263 -38172181 - L2 LINE L2 -5 3308 2200 228 273 52 26 chr9 104099470 104099547 -38171897 + MIR SINE MIR 74 152 -56 33 25 0 0 chr9 104100654 104100694 -38170750 + AT_rich Low_complexity Low_complexity 1 40 0 919 302 23 27 chr9 104100788 104101271 -38170173 + L1ME3A LINE L1 5488 5968 -202 2070 143 7 0 chr9 104101298 104101606 -38169838 - AluJb SINE Alu -2 310 1 195 100 0 0 chr9 104102065 104102095 -38169349 + (T)n Simple_repeat Simple_repeat 1 30 0 1944 64 4 0 chr9 104102107 104102343 -38169101 - AluY SINE Alu -74 237 1 365 346 58 19 chr9 104102627 104102832 -38168612 + L2 LINE L2 3101 3313 0 189 196 0 0 chr9 104102832 104102878 -38168566 + (TGAG)n Simple_repeat Simple_repeat 2 47 0 23 33 0 0 chr9 104103012 104103042 -38168402 + AT_rich Low_complexity Low_complexity 1 30 0 2082 48 0 0 chr9 104103376 104103625 -38167819 + AluYb8 SINE Alu 65 313 -5 226 0 59 0 chr9 104103992 104104026 -38167418 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 3181 31 3 0 chr9 104104041 104104422 -38167022 - L1PA2 LINE L1 0 6155 5774 3214 21 0 14 chr9 104104422 104104986 -38166458 + L1P1 LINE L1 4982 5537 -618 615 239 133 32 chr9 104105843 104106061 -38165383 - MIR SINE MIR -1 261 22 1589 203 79 6 chr9 104106498 104106838 -38164606 - MLT1A1 LTR MaLR 0 365 1 181 257 0 0 chr9 104107065 104107100 -38164344 - L2 LINE L2 -33 3239 3205 2282 87 0 0 chr9 104107406 104107692 -38163752 + AluSx SINE Alu 11 296 -16 337 403 63 0 chr9 104109082 104109241 -38162203 + MIR3 SINE MIR 34 202 -6 477 147 0 0 chr9 104109291 104109366 -38162078 + FLAM_C SINE Alu 29 103 -40 243 0 0 0 chr9 104109389 104109416 -38162028 + (CA)n Simple_repeat Simple_repeat 2 28 0 390 223 58 6 chr9 104110230 104110352 -38161092 - MIR SINE MIR -71 137 14 28 0 0 0 chr9 104110592 104110620 -38160824 + AT_rich Low_complexity Low_complexity 1 28 0 5198 27 0 0 chr9 104110620 104111220 -38160224 - L1PA3 LINE L1 -3 6152 5553 534 29 0 0 chr9 104111220 104111290 -38160154 + L1P1 LINE L1 5418 5487 -668 282 243 206 15 chr9 104111297 104111433 -38160011 - MLT1K LTR MaLR -411 177 16 192 347 0 0 chr9 104111453 104111502 -38159942 + L2 LINE L2 3177 3225 -88 38 22 0 0 chr9 104111565 104111610 -38159834 + AT_rich Low_complexity Low_complexity 1 45 0 341 237 166 79 chr9 104112989 104113128 -38158316 - MER5A DNA MER1_type -25 164 14 253 227 159 0 chr9 104113187 104113275 -38158169 + MIR SINE MIR 36 137 -71 285 232 80 29 chr9 104115457 104115595 -38155849 + L1ME4a LINE L1 5742 5886 -235 204 125 0 0 chr9 104115666 104115698 -38155746 + (CA)n Simple_repeat Simple_repeat 2 33 0 893 323 8 4 chr9 104116063 104116323 -38155121 - MIR SINE MIR 0 262 2 503 289 89 5 chr9 104116812 104117002 -38154442 - MIR SINE MIR -55 207 2 375 294 158 0 chr9 104117049 104117195 -38154249 - MIR SINE MIR -30 232 64 188 322 119 17 chr9 104117532 104117650 -38153794 + L2 LINE L2 3184 3313 0 464 294 150 77 chr9 104118294 104118887 -38152557 + L2 LINE L2 2683 3313 0 1580 173 68 28 chr9 104119883 104120207 -38151237 + MER1B DNA MER1_type 1 337 0 354 309 41 0 chr9 104120253 104120350 -38151094 - MER5A DNA MER1_type -80 109 9 225 241 13 101 chr9 104120365 104120444 -38151000 - L3 LINE CR1 -82 1495 1424 2595 59 0 0 chr9 104120445 104120751 -38150693 + AluY SINE Alu 1 306 -5 31 58 0 0 chr9 104120825 104120877 -38150567 + AT_rich Low_complexity Low_complexity 1 52 0 301 293 143 8 chr9 104120896 104121029 -38150415 - MIR SINE MIR -95 167 17 432 226 57 8 chr9 104121182 104121306 -38150138 + MER94 DNA DNA 5 134 0 1219 199 9 0 chr9 104121642 104121863 -38149581 + MER58A DNA MER1_type 2 224 0 1752 124 55 29 chr9 104122272 104122572 -38148872 - AluSx SINE Alu 0 311 5 709 339 33 0 chr9 104122722 104122964 -38148480 - MIR SINE MIR -1 261 12 2181 63 0 4 chr9 104123487 104123757 -38147687 - AluY SINE Alu -12 299 31 212 296 0 0 chr9 104123880 104123934 -38147510 - MIR3 SINE MIR -25 183 130 477 318 45 21 chr9 104123968 104124210 -38147234 - MIR SINE MIR -12 250 3 201 156 0 0 chr9 104124709 104124741 -38146703 + T-rich Low_complexity Low_complexity 1 32 0 285 242 30 0 chr9 104125028 104125094 -38146350 - MIR SINE MIR -24 238 171 305 357 54 27 chr9 104125363 104125587 -38145857 - MIR SINE MIR -32 230 1 208 254 45 0 chr9 104126835 104126902 -38144542 - MIR SINE MIR -123 139 70 2208 109 48 28 chr9 104126984 104127341 -38144103 + THE1B LTR MaLR 1 364 0 5537 35 12 0 chr9 104127515 104128173 -38143271 + L1PA4 LINE L1 5475 6140 -15 1273 219 16 0 chr9 104128281 104128591 -38142853 - L1 LINE L1 -2071 4075 3761 526 246 14 21 chr9 104129619 104129761 -38141683 + L2 LINE L2 3173 3313 0 2264 113 3 0 chr9 104131991 104132291 -38139153 - AluSq SINE Alu -12 301 1 1896 144 3 3 chr9 104133231 104133522 -38137922 + AluJo SINE Alu 1 291 -21 207 232 188 0 chr9 104134851 104134920 -38136524 - MIR3 SINE MIR -15 193 112 686 191 186 25 chr9 104135294 104135493 -38135951 + MIR SINE MIR 31 261 -1 189 0 0 0 chr9 104135565 104135586 -38135858 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 272 238 131 25 chr9 104136149 104136271 -38135173 + L2 LINE L2 3179 3313 0 408 179 163 132 chr9 104136755 104136945 -38134499 + MIR SINE MIR 65 260 -2 2281 88 3 16 chr9 104136989 104137294 -38134150 + AluSc SINE Alu 5 305 -4 385 287 85 0 chr9 104137300 104137394 -38134050 + L2 LINE L2 3169 3270 -2 196 167 83 0 chr9 104137685 104137733 -38133711 - L3b LINE CR1 -8 1575 1524 204 40 0 0 chr9 104139935 104139960 -38131484 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 371 349 21 58 chr9 104140024 104140213 -38131231 + MER5A DNA MER1_type 3 184 -5 216 0 0 0 chr9 104142074 104142098 -38129346 + (T)n Simple_repeat Simple_repeat 1 24 0 1281 284 73 40 chr9 104142900 104143418 -38128026 + MLT1H LTR MaLR 15 549 0 900 256 54 39 chr9 104145640 104145898 -38125546 - MIR SINE MIR 0 262 1 3274 185 16 56 chr9 104147882 104148634 -38122810 + MER72 LTR ERV1 1 722 0 302 245 122 0 chr9 104148849 104148947 -38122497 - MIR3 SINE MIR -14 194 85 185 309 71 24 chr9 104149067 104149151 -38122293 - MIR SINE MIR -173 89 2 189 345 73 18 chr9 104149331 104149441 -38122003 - L2 LINE L2 -19 3294 3179 821 219 85 87 chr9 104149676 104150042 -38121402 + MLT1A1 LTR MaLR 1 365 0 649 287 38 10 chr9 104150404 104150613 -38120831 - MIR SINE MIR -31 231 17 505 249 104 59 chr9 104151537 104151758 -38119686 - MIR SINE MIR -17 245 15 1945 152 18 0 chr9 104152398 104152681 -38118763 - AluSx SINE Alu -24 288 1 189 0 0 0 chr9 104203172 104203193 -38068251 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 510 211 9 0 chr9 104203195 104203309 -38068135 - L1P LINE L1 -1105 5041 4927 1714 83 36 8 chr9 104203309 104203559 -38067885 + L1PA12 LINE L1 5909 6168 0 413 352 54 69 chr9 104204541 104204930 -38066514 - L2 LINE L2 0 3272 2890 405 191 146 0 chr9 104205247 104205336 -38066108 + Tigger3b DNA MER2_type 1 102 -1129 * 2356 139 122 18 chr9 104205334 104205802 -38065642 + Tigger3b DNA MER2_type 274 801 -2227 2075 104 0 11 chr9 104205802 104206089 -38065355 + AluSc SINE Alu 1 284 -25 2356 139 122 18 chr9 104206089 104206129 -38065315 + Tigger3b DNA MER2_type 801 835 -396 1256 155 128 0 chr9 104206128 104206347 -38065097 + Tigger3b DNA MER2_type 986 1232 0 * 198 298 0 18 chr9 104207003 104207060 -38064384 + L3 LINE CR1 1499 1554 -23 715 276 127 52 chr9 104209132 104209844 -38061600 + L2 LINE L2 2528 3281 -32 366 286 36 50 chr9 104210573 104210634 -38060810 - L2 LINE L2 0 3313 3253 1798 193 16 66 chr9 104210634 104210983 -38060461 + MER47B DNA MER2_type 1 325 -1998 216 86 0 0 chr9 104210983 104211018 -38060426 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 1798 193 16 66 chr9 104211018 104211108 -38060336 + MER47B DNA MER2_type 325 418 0 366 286 36 50 chr9 104211108 104211186 -38060258 - L2 LINE L2 -60 3253 3176 1313 171 13 49 chr9 104211200 104211481 -38059963 + LTR1 LTR ERV1 1 235 -550 277 247 6 24 chr9 104211670 104211840 -38059604 + LTR1B LTR ERV1 572 812 -14 663 274 177 18 chr9 104211890 104212116 -38059328 - MIR SINE MIR 0 262 1 193 241 74 0 chr9 104215765 104215819 -38055625 + MIR SINE MIR 119 176 -86 3128 144 75 12 chr9 104217037 104217622 -38053822 - MER44D DNA MER2_type -83 622 1 502 187 27 139 chr9 104217647 104217834 -38053610 + LTR50 LTR ERVL 123 288 -507 779 281 126 8 chr9 104218003 104218369 -38053075 + LTR50 LTR ERVL 345 753 -42 694 233 29 134 chr9 104218928 104219203 -38052241 - MIR SINE MIR -4 258 13 295 314 102 51 chr9 104219496 104219633 -38051811 - MER5A DNA MER1_type 0 189 35 836 161 0 7 chr9 104219930 104220073 -38051371 + FLAM_C SINE Alu 1 142 -1 477 186 69 20 chr9 104220086 104220188 -38051256 + FRAM SINE Alu 63 169 -7 310 266 31 39 chr9 104220488 104220616 -38050828 + HAL1 LINE L1 1061 1187 -1320 195 42 0 0 chr9 104221337 104221361 -38050083 + (A)n Simple_repeat Simple_repeat 1 24 0 457 181 24 12 chr9 104221511 104221594 -38049850 + AluJ/FLAM SINE Alu 1 84 -228 313 258 34 34 chr9 104221866 104221955 -38049489 - L2 LINE L2 0 3272 3184 21 0 0 0 chr9 104222076 104222097 -38049347 + AT_rich Low_complexity Low_complexity 1 21 0 180 274 40 97 chr9 104222579 104222703 -38048741 - MIR SINE MIR -19 243 127 547 208 84 98 chr9 104223033 104223307 -38048137 + MER102a DNA MER1_type 61 330 0 249 301 65 59 chr9 104223315 104223501 -38047943 - MER5A DNA MER1_type 0 189 3 270 272 185 0 chr9 104223582 104223674 -38047770 - MER5A DNA MER1_type -43 146 38 282 238 0 16 chr9 104224350 104224413 -38047031 - L2 LINE L2 0 3313 3252 1221 196 74 12 chr9 104224828 104225165 -38046279 - MER113 DNA MER1_type? -33 488 131 288 264 109 0 chr9 104225267 104225377 -38046067 - MER113 DNA MER1_type? -399 122 1 2212 111 0 7 chr9 104225456 104225754 -38045690 + AluSg SINE Alu 1 296 -14 202 146 49 0 chr9 104226659 104226700 -38044744 + L2 LINE L2 3269 3311 -2 1331 124 19 0 chr9 104227125 104227335 -38044109 + L1PA13 LINE L1 5950 6163 0 2624 91 6 0 chr9 104227394 104227747 -38043697 + THE1A LTR MaLR 1 355 0 5247 132 24 7 chr9 104227747 104228621 -38042823 + THE1A-int LTR MaLR 1 889 -691 499 85 24 0 chr9 104229259 104229341 -38042103 + THE1A-int LTR MaLR 1497 1580 0 1058 93 31 0 chr9 104229341 104229503 -38041941 + THE1A LTR MaLR 1 167 -188 4585 109 114 134 chr9 104229503 104231033 -38040411 - pTR5 LTR ERV1 -18 2420 743 1409 117 9 0 chr9 104231035 104231248 -38040196 + THE1A LTR MaLR 141 355 0 694 273 108 35 chr9 104232121 104232436 -38039008 + L2 LINE L2 2915 3252 -61 398 213 0 0 chr9 104232932 104232971 -38038473 + MER3 DNA MER1_type 9 47 -162 225 181 56 28 chr9 104232971 104233043 -38038401 - MER3 DNA MER1_type 0 209 136 68 13 0 0 chr9 104233043 104233118 -38038326 + AT_rich Low_complexity Low_complexity 1 75 0 427 92 40 0 chr9 104233120 104233196 -38038248 - L1MA1 LINE L1 0 6302 6224 2024 191 57 38 chr9 104235584 104236080 -38035364 - MLT1D LTR MaLR 0 505 1 288 351 94 23 chr9 104236802 104236973 -38034471 - MIR SINE MIR -77 185 3 724 202 0 0 chr9 104239258 104239382 -38032062 - FLAM_A SINE Alu -9 124 1 352 293 157 51 chr9 104243326 104243715 -38027729 + L1M2 LINE L1 676 1105 -5744 256 259 24 47 chr9 104246066 104246151 -38025293 - L2 LINE L2 -1 3312 3230 1090 279 91 30 chr9 104246200 104246766 -38024678 - L2 LINE L2 -74 3239 2636 266 331 8 54 chr9 104246767 104246897 -38024547 - L2 LINE L2 -595 2719 2596 274 317 12 0 chr9 104246941 104247023 -38024421 - MIR SINE MIR -112 150 68 256 252 234 47 chr9 104249205 104249312 -38022132 - MIR SINE MIR -116 146 20 210 191 0 0 chr9 104250581 104250628 -38020816 + (CTA)n Simple_repeat Simple_repeat 1 47 0 1761 230 52 92 chr9 104253684 104254302 -38017142 - MLT1E LTR MaLR 0 593 1 363 363 31 22 chr9 104255032 104255258 -38016186 + L1ME LINE L1 5596 5823 -298 23 0 0 0 chr9 104255373 104255396 -38016048 + AT_rich Low_complexity Low_complexity 1 23 0 191 288 153 17 chr9 104255755 104255873 -38015571 - MIR SINE MIR -50 212 79 23 0 0 0 chr9 104260335 104260358 -38011086 + AT_rich Low_complexity Low_complexity 1 23 0 2542 160 19 2 chr9 104260378 104260797 -38010647 - MSTB LTR MaLR 0 426 1 923 290 33 40 chr9 104261100 104261492 -38009952 - LTR16A LTR ERVL -1 449 61 1271 225 33 25 chr9 104261492 104261896 -38009548 + MLT2B1 LTR ERVL 1 456 -64 2147 129 8 11 chr9 104261898 104262254 -38009190 - MER47A DNA MER2_type -1 365 11 237 108 0 0 chr9 104262258 104262295 -38009149 + MLT2B1 LTR ERVL 464 500 -15 233 317 10 59 chr9 104262558 104262659 -38008785 + MIR SINE MIR 15 110 -152 274 183 0 50 chr9 104262766 104262826 -38008618 - MIR SINE MIR -101 161 105 215 386 23 38 chr9 104263080 104263212 -38008232 - L2 LINE L2 0 3272 3143 697 236 77 11 chr9 104263867 104264049 -38007395 + MIR SINE MIR 26 219 -43 775 220 78 25 chr9 104264192 104264437 -38007007 + MIR SINE MIR 5 262 0 21 36 0 0 chr9 104265820 104265848 -38005596 + AT_rich Low_complexity Low_complexity 1 28 0 597 160 40 67 chr9 104265896 104266046 -38005398 - L1MA7 LINE L1 -1 6290 6145 * 954 171 49 24 chr9 104266044 104266249 -38005195 + L1MA7 LINE L1 5938 6147 -144 27 29 0 0 chr9 104266260 104266294 -38005150 + AT_rich Low_complexity Low_complexity 1 34 0 4840 126 26 4 chr9 104266450 104267206 -38004238 - L1PA15 LINE L1 -22 6143 5371 675 261 26 26 chr9 104267302 104267497 -38003947 - MIR SINE MIR -1 261 67 644 296 130 27 chr9 104267716 104268172 -38003272 + L1MC/D LINE L1 5304 5804 -635 236 298 58 58 chr9 104269624 104269745 -38001699 + L3 LINE CR1 1415 1535 -42 22 0 0 0 chr9 104270007 104270029 -38001415 + AT_rich Low_complexity Low_complexity 1 22 0 194 237 0 0 chr9 104270868 104270906 -38000538 - MIR SINE MIR 0 262 225 201 121 0 0 chr9 104270924 104270957 -38000487 + (CA)n Simple_repeat Simple_repeat 2 34 0 187 325 130 0 chr9 104271494 104271571 -37999873 + L2 LINE L2 3225 3311 -2 1791 151 0 25 chr9 104271648 104271933 -37999511 + AluSx SINE Alu 3 280 -32 367 138 46 0 chr9 104272065 104272130 -37999314 + Alu SINE Alu 233 300 0 767 183 22 0 chr9 104272333 104272470 -37998974 - FRAM SINE Alu -16 160 21 190 384 101 7 chr9 104273728 104273866 -37997578 + L2 LINE L2 3122 3272 0 2139 122 0 0 chr9 104276153 104276448 -37994996 - AluSc SINE Alu -14 295 1 358 290 233 43 chr9 104276827 104277321 -37994123 + L2 LINE L2 2643 3313 0 * 412 306 115 31 chr9 104277317 104277605 -37993839 - L2 LINE L2 -410 2904 2593 298 321 136 36 chr9 104277615 104277718 -37993726 + MIR SINE MIR 9 100 -162 1190 259 76 21 chr9 104277718 104278154 -37993290 + LTR16B LTR ERVL 5 464 0 298 321 136 36 chr9 104278154 104278271 -37993173 + MIR SINE MIR 100 251 -11 391 326 31 50 chr9 104278354 104278612 -37992832 - L2 LINE L2 -842 2472 2220 735 278 9 61 chr9 104279855 104279926 -37991518 + MIR SINE MIR 1 74 -188 1552 174 50 0 chr9 104279926 104280085 -37991359 - AluSx SINE Alu -16 296 115 252 0 0 0 chr9 104280085 104280113 -37991331 + (TA)n Simple_repeat Simple_repeat 2 29 0 1552 174 50 0 chr9 104280113 104280235 -37991209 - AluSx SINE Alu -197 115 1 735 278 9 61 chr9 104280235 104280393 -37991051 + MIR SINE MIR 74 218 -44 600 322 58 12 chr9 104281320 104281562 -37989882 - MIR SINE MIR -2 260 8 546 219 9 0 chr9 104283048 104283162 -37988282 - AluSx SINE Alu -4 305 191 861 147 22 0 chr9 104283163 104283299 -37988145 - AluSx SINE Alu -172 141 3 210 318 0 30 chr9 104283843 104283909 -37987535 - L2 LINE L2 -5 3308 3245 501 318 43 15 chr9 104285552 104285766 -37985678 + MIR SINE MIR 34 252 -10 618 207 25 116 chr9 104285891 104286089 -37985355 + MIR SINE MIR 1 180 -82 224 136 76 15 chr9 104286094 104286160 -37985284 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 46 54 0 0 chr9 104286179 104286253 -37985191 + AT_rich Low_complexity Low_complexity 1 74 0 303 44 0 0 chr9 104286587 104286632 -37984812 + AluY SINE Alu 255 299 -1 211 256 0 0 chr9 104286701 104286740 -37984704 - L2 LINE L2 -23 3290 3252 22 0 0 0 chr9 104287302 104287324 -37984120 + AT_rich Low_complexity Low_complexity 1 22 0 259 209 0 0 chr9 104287476 104287519 -37983925 + L2 LINE L2 3262 3304 -9 2007 90 29 35 chr9 104287530 104287841 -37983603 + AluSc SINE Alu 1 309 0 231 146 0 0 chr9 104287856 104287897 -37983547 + (GGGAA)n Simple_repeat Simple_repeat 3 43 0 474 61 0 0 chr9 104288047 104288113 -37983331 + (TC)n Simple_repeat Simple_repeat 1 66 0 2473 35 0 0 chr9 104288932 104289240 -37982204 - AluY SINE Alu 0 308 1 6669 5 0 0 chr9 104289495 104290239 -37981205 + L1HS LINE L1 5412 6155 0 235 354 10 40 chr9 104291291 104291390 -37980054 - L2 LINE L2 0 3313 3218 2913 266 74 68 chr9 104291604 104294511 -37976933 - L1M2 LINE L1 -725 5437 2528 1602 207 85 52 chr9 104294507 104294622 -37976822 + L1MC3 LINE L1 6765 6875 -910 * 1783 199 11 14 chr9 104294622 104294988 -37976456 - MLT1A1 LTR MaLR 0 365 1 1602 207 85 52 chr9 104294988 104295389 -37976055 + L1MC3 LINE L1 6875 7298 -487 893 315 57 32 chr9 104295393 104295630 -37975814 - L2 LINE L2 -33 3280 3025 2372 89 3 0 chr9 104295630 104295932 -37975512 - AluSg SINE Alu -7 303 1 893 315 57 32 chr9 104295932 104296135 -37975309 - L2 LINE L2 -288 3025 2829 1259 203 82 106 chr9 104296137 104296277 -37975167 - MLT1C LTR MaLR 0 467 325 2885 6 0 0 chr9 104296277 104296588 -37974856 - AluYa5 SINE Alu 0 311 1 1259 203 82 106 chr9 104296588 104296920 -37974524 - MLT1C LTR MaLR -142 325 6 2707 285 59 27 chr9 104296925 104297226 -37974218 - L2 LINE L2 -482 2832 2542 2151 118 57 14 chr9 104297226 104297575 -37973869 + THE1B LTR MaLR 1 364 0 2707 285 59 27 chr9 104297575 104298310 -37973134 - L2 LINE L2 -772 2542 1763 826 226 0 0 chr9 104298315 104298461 -37972983 + MER20 DNA MER1_type 17 162 -57 2448 304 109 10 chr9 104298472 104299455 -37971989 + L2 LINE L2 492 1571 -1743 364 274 89 85 chr9 104299675 104300452 -37970992 - L1MEd LINE L1 -4994 1125 346 1512 185 15 65 chr9 104300850 104301191 -37970253 + MER58B DNA MER1_type 2 325 -16 21 36 0 0 chr9 104302340 104302368 -37969076 + AT_rich Low_complexity Low_complexity 1 28 0 450 286 5 43 chr9 104302562 104302747 -37968697 + MER5B DNA MER1_type 1 178 0 405 183 14 0 chr9 104302755 104302826 -37968618 - MER20 DNA MER1_type 0 219 148 189 0 0 0 chr9 104302842 104302863 -37968581 + (ATG)n Simple_repeat Simple_repeat 3 23 0 205 279 12 35 chr9 104302863 104302944 -37968500 - MIR SINE MIR -22 240 162 185 371 0 0 chr9 104303012 104303074 -37968370 + MIR SINE MIR 31 92 -170 712 285 103 19 chr9 104303209 104303730 -37967714 + L1M4c LINE L1 1075 1852 -4711 1362 49 0 0 chr9 104303730 104303894 -37967550 + L1PA10 LINE L1 5995 6158 -10 712 285 103 19 chr9 104303894 104303996 -37967448 + L1M4c LINE L1 1852 1944 -4619 466 258 30 0 chr9 104303993 104304160 -37967284 + L1M4c LINE L1 2431 2602 -3961 * 1745 176 48 38 chr9 104304216 104304245 -37967199 - MLT2D LTR ERVL -12 402 375 423 0 0 0 chr9 104304245 104304292 -37967152 + (TG)n Simple_repeat Simple_repeat 1 47 0 1745 176 48 38 chr9 104304292 104304660 -37966784 - MLT2D LTR ERVL -39 375 1 407 286 84 8 chr9 104304660 104304779 -37966665 - MIR SINE MIR -99 163 36 220 317 83 41 chr9 104306075 104306220 -37965224 - L2 LINE L2 0 3313 3163 924 308 33 48 chr9 104306252 104306651 -37964793 + L2 LINE L2 2920 3312 -1 240 59 0 0 chr9 104306825 104306859 -37964585 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 648 281 183 52 chr9 104307737 104308473 -37962971 - L2 LINE L2 -458 2856 2024 238 326 146 40 chr9 104308684 104308985 -37962459 - L2 LINE L2 -2892 422 90 190 331 166 14 chr9 104309326 104309465 -37961979 + L2 LINE L2 3117 3276 -37 203 237 0 0 chr9 104309468 104309506 -37961938 + (CA)n Simple_repeat Simple_repeat 1 38 0 183 256 145 48 chr9 104309965 104310192 -37961252 + L3 LINE CR1 1137 1385 -192 * 279 275 0 33 chr9 104310185 104310276 -37961168 + L2 LINE L2 2820 2907 -365 203 458 0 0 chr9 104310443 104310550 -37960894 + L2 LINE L2 3162 3268 -4 * 342 288 88 24 chr9 104310540 104310710 -37960734 + L3 LINE CR1 1396 1576 -1 336 48 0 0 chr9 104311458 104311500 -37959944 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 27 0 0 0 chr9 104311885 104311912 -37959532 + AT_rich Low_complexity Low_complexity 1 27 0 1731 229 242 16 chr9 104311923 104312407 -37959037 + MLT1E LTR MaLR 1 593 0 2004 237 77 8 chr9 104312765 104313271 -37958173 + MER119 DNA MER1_type 29 569 -14 3696 178 7 23 chr9 104313278 104313472 -37957972 + L1MB2 LINE L1 5442 5638 -533 1806 148 0 4 chr9 104313472 104313743 -37957701 + AluSx SINE Alu 15 312 0 187 71 0 0 chr9 104313743 104313771 -37957673 + (CAAAA)n Simple_repeat Simple_repeat 2 165 0 3696 178 7 23 chr9 104313771 104314314 -37957130 + L1MB2 LINE L1 5638 6169 -2 26 64 0 0 chr9 104314660 104314707 -37956737 + AT_rich Low_complexity Low_complexity 1 47 0 1767 154 0 24 chr9 104314713 104315005 -37956439 - AluJo SINE Alu -27 285 1 26 0 0 0 chr9 104315765 104315791 -37955653 + AT_rich Low_complexity Low_complexity 1 26 0 390 298 42 100 chr9 104316509 104316939 -37954505 + L1ME4a LINE L1 4731 5135 -1011 630 256 186 43 chr9 104317081 104317613 -37953831 + L1ME4a LINE L1 5302 5756 -365 194 0 39 0 chr9 104317613 104317639 -37953805 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1491 39 0 6 chr9 104317642 104317824 -37953620 - L1PA4 LINE L1 -8 6147 5967 630 256 186 43 chr9 104317824 104317872 -37953572 + L1PA4 LINE L1 5757 5970 -151 1918 55 0 4 chr9 104318108 104318363 -37953081 - AluY SINE Alu 0 303 50 291 253 53 13 chr9 104318581 104318656 -37952788 - MIR3 SINE MIR -15 193 116 532 297 41 14 chr9 104320904 104321049 -37950395 - MER91A DNA MER1_type -33 163 15 242 254 16 0 chr9 104321692 104321755 -37949689 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 699 144 14 68 chr9 104322644 104322790 -37948654 + MLT2B3 LTR ERVL 1 138 -416 5187 168 10 29 chr9 104322830 104324144 -37947300 + L1MA4 LINE L1 4938 6286 -14 2425 127 3 0 chr9 104324144 104324498 -37946946 + THE1A LTR MaLR 1 355 0 11317 108 1 3 chr9 104324498 104326082 -37945362 + THE1A-int LTR MaLR 1 1580 0 2519 103 3 3 chr9 104326082 104326421 -37945023 + THE1A LTR MaLR 17 355 0 2050 138 0 41 chr9 104326443 104326762 -37944682 + AluSx SINE Alu 1 306 -6 799 171 27 20 chr9 104326770 104326916 -37944528 + MLT2B2 LTR ERVL 133 279 -236 2735 68 27 5 chr9 104326918 104327285 -37944159 + MLT2A1 LTR ERVL 1 375 -69 229 174 0 0 chr9 104327312 104327358 -37944086 - LTR66 LTR ERVL -171 439 394 340 57 38 19 chr9 104327372 104327425 -37944019 + MLT2A2 LTR ERVL 400 453 0 992 210 18 0 chr9 104327425 104327628 -37943816 + MLT2B2 LTR ERVL 283 546 -8 2518 143 29 12 chr9 104327661 104328082 -37943362 + MSTA LTR MaLR 1 428 0 331 125 0 0 chr9 104328303 104328351 -37943093 + L1PA15 LINE L1 6052 6099 -66 3794 127 55 6 chr9 104328645 104329266 -37942178 - L1PA15 LINE L1 -3 6162 5512 328 284 118 16 chr9 104331014 104331160 -37940284 + MIR SINE MIR 2 158 -67 507 308 148 47 chr9 104331239 104331625 -37939819 + MLT1H LTR MaLR 123 547 -2 686 277 40 28 chr9 104332358 104332611 -37938833 - L2 LINE L2 -4 3309 3054 29650 121 13 57 chr9 104332790 104335401 -37936043 + L1PA7 LINE L1 9 2733 -3421 216 0 0 0 chr9 104335401 104335425 -37936019 + (CAA)n Simple_repeat Simple_repeat 1 24 0 29650 121 13 57 chr9 104335425 104335648 -37935796 + L1PA7 LINE L1 2733 2964 -3190 2231 82 11 0 chr9 104335648 104335952 -37935492 - AluSx SINE Alu 0 307 1 29650 121 13 57 chr9 104335952 104339544 -37931900 + L1PA7 LINE L1 2964 6147 -7 931 253 41 29 chr9 104339916 104340326 -37931118 - MLT1G1 LTR MaLR -27 528 87 978 131 34 11 chr9 104341271 104341447 -37929997 - L1MA3 LINE L1 0 6305 6126 187 290 40 60 chr9 104341595 104341695 -37929749 + L2 LINE L2 353 450 -2864 812 289 178 10 chr9 104341721 104342115 -37929329 + LTR50 LTR ERVL 104 563 -232 227 373 16 24 chr9 104342800 104342926 -37928518 - L2 LINE L2 -237 3035 2911 24 0 0 0 chr9 104343251 104343275 -37928169 + AT_rich Low_complexity Low_complexity 1 24 0 397 236 133 51 chr9 104345486 104345722 -37925722 - MLT1I LTR MaLR -89 320 10 318 238 43 181 chr9 104345761 104346106 -37925338 - L1M4 LINE L1 -3345 2801 2567 1204 193 146 8 chr9 104346106 104346360 -37925084 - AluJo SINE Alu -12 290 2 318 238 43 181 chr9 104346360 104346594 -37924850 - L1M4 LINE L1 -3579 2567 2302 703 276 16 44 chr9 104346647 104346897 -37924547 + L2 LINE L2 1978 2220 -1094 406 179 36 12 chr9 104346899 104346983 -37924461 - LTR50 LTR ERVL 0 795 710 9301 26 0 2 chr9 104347578 104349461 -37921983 + L1PA3 LINE L1 4271 6152 -3 413 270 0 58 chr9 104349793 104349930 -37921514 - MIR SINE MIR -46 216 88 244 341 141 12 chr9 104351251 104351336 -37920108 + MER5A DNA MER1_type 72 167 -22 * 300 284 12 25 chr9 104351288 104351369 -37920075 - MER5A DNA MER1_type -109 80 1 3381 153 29 60 chr9 104352334 104352851 -37918593 + MER44D DNA MER2_type 64 558 -2029 2250 128 0 0 chr9 104352851 104353164 -37918280 - AluSq SINE Alu 0 313 1 3381 153 29 60 chr9 104353164 104353300 -37918144 + MER44D DNA MER2_type 558 697 -8 806 294 184 13 chr9 104353771 104354152 -37917292 - MLT1J LTR MaLR -2 509 64 15150 108 4 0 chr9 104354349 104354834 -37916610 + L1PA8 LINE L1 3016 3497 -2675 207 0 0 0 chr9 104354834 104354857 -37916587 + (CAA)n Simple_repeat Simple_repeat 2 24 0 15150 108 4 0 chr9 104354857 104357528 -37913916 + L1PA8 LINE L1 3497 6171 -1 2304 90 7 0 chr9 104357816 104358115 -37913329 - AluSp SINE Alu -12 301 1 3038 179 10 2 chr9 104358232 104358747 -37912697 - LTR53 LTR ERVL 0 519 1 1705 138 0 12 chr9 104360270 104360524 -37910920 - AluSx SINE Alu -14 298 48 284 282 71 88 chr9 104360955 104361479 -37909965 + HAL1b LINE L1 215 729 -619 454 371 61 8 chr9 104363150 104363511 -37907933 - L1MEc LINE L1 -5941 455 76 475 163 81 62 chr9 104363516 104363676 -37907768 - MER69 DNA AcHobo -340 2186 2024 645 310 61 0 chr9 104363736 104363949 -37907495 - MER69 DNA AcHobo -986 240 15 22 0 0 0 chr9 104364737 104364759 -37906685 + AT_rich Low_complexity Low_complexity 1 22 0 507 109 11 11 chr9 104364909 104365001 -37906443 + L1MA7 LINE L1 6199 6290 -1 28 0 0 0 chr9 104365165 104365193 -37906251 + AT_rich Low_complexity Low_complexity 1 28 0 2506 136 16 121 chr9 104365380 104365933 -37905511 - LTR42 LTR ERVL 0 495 1 333 347 14 14 chr9 104366250 104366463 -37904981 + MLT1K LTR MaLR 376 588 0 871 232 64 60 chr9 104366955 104367188 -37904256 + MIR SINE MIR 8 241 -21 512 271 124 6 chr9 104368502 104368679 -37902765 + MIR SINE MIR 4 201 -61 21 0 0 0 chr9 104368749 104368770 -37902674 + AT_rich Low_complexity Low_complexity 1 21 0 226 159 0 23 chr9 104368791 104368835 -37902609 + MLT1K LTR MaLR 532 574 -14 2808 106 2 21 chr9 104369218 104369326 -37902118 - L1P LINE L1 -1034 5112 5004 2409 87 20 0 chr9 104369326 104369626 -37901818 - AluSq SINE Alu -7 306 1 2808 106 2 21 chr9 104369626 104369952 -37901492 - L1P LINE L1 -1142 5004 4686 820 75 42 0 chr9 104369953 104370073 -37901371 - L1P LINE L1 -1683 4463 4339 5709 96 32 2 chr9 104370073 104371022 -37900422 + L1PA8A LINE L1 5141 6113 -18 1326 348 98 19 chr9 104371521 104372581 -37898863 + L2 LINE L2 1761 2904 -410 274 109 0 0 chr9 104372619 104372665 -37898779 + MADE1 DNA Mariner 1 46 -34 218 319 165 11 chr9 104372665 104372756 -37898688 + L2 LINE L2 2941 3045 -268 266 218 36 0 chr9 104373514 104373569 -37897875 + L2 LINE L2 3255 3311 -2 24 0 0 0 chr9 104375078 104375102 -37896342 + AT_rich Low_complexity Low_complexity 1 24 0 218 221 0 73 chr9 104375374 104375442 -37896002 - L2 LINE L2 -60 3253 3191 430 306 85 71 chr9 104375987 104376296 -37895148 + L1ME4a LINE L1 5650 5967 -199 218 364 114 8 chr9 104376305 104376437 -37895007 + MIR SINE MIR 22 167 -95 289 326 30 15 chr9 104376482 104376614 -37894830 + MIR SINE MIR 11 144 -118 674 257 83 46 chr9 104376625 104376866 -37894578 + MIR SINE MIR 13 262 0 445 202 147 9 chr9 104377729 104377838 -37893606 - L2 LINE L2 -5 3308 3185 23 0 0 0 chr9 104380381 104380404 -37891040 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 104380759 104380780 -37890664 + AT_rich Low_complexity Low_complexity 1 21 0 247 345 51 25 chr9 104380964 104381161 -37890283 + L2 LINE L2 2889 3090 -182 277 100 0 0 chr9 104383232 104383272 -37888172 - L1MA9 LINE L1 -2 6310 6271 2271 75 0 68 chr9 104383928 104384250 -37887194 - AluY SINE Alu -11 300 1 527 242 210 14 chr9 104384515 104384734 -37886710 + MIR SINE MIR 1 262 0 744 246 196 32 chr9 104386702 104387080 -37884364 + LTR16A1 LTR ERVL 5 444 -13 2203 233 92 15 chr9 104387354 104387900 -37883544 - MLT1E LTR MaLR -5 588 1 193 87 22 22 chr9 104388787 104388833 -37882611 + (TA)n Simple_repeat Simple_repeat 1 46 0 6493 87 0 0 chr9 104388839 104389790 -37881654 - L1PA10 LINE L1 -11 6157 5202 3932 145 13 0 chr9 104389790 104390425 -37881019 + L1P LINE L1 3821 4463 -1683 1523 64 25 0 chr9 104390440 104390643 -37880801 - L1MA1 LINE L1 0 6302 6095 288 293 79 68 chr9 104390663 104390943 -37880501 + HAL1b LINE L1 118 400 -948 435 298 71 77 chr9 104391498 104391864 -37879580 - HAL1 LINE L1 -873 1634 1271 1733 204 59 16 chr9 104391902 104392343 -37879101 - MLT1C LTR MaLR -1 466 7 180 343 134 15 chr9 104392829 104392896 -37878548 - MER5B DNA MER1_type -28 150 76 301 289 193 0 chr9 104392925 104393060 -37878384 - MER5A DNA MER1_type -6 183 23 674 257 7 0 chr9 104393072 104393224 -37878220 - MER5B DNA MER1_type -3 175 23 267 332 89 34 chr9 104393669 104394018 -37877426 - HAL1 LINE L1 -1428 1079 712 5462 21 0 0 chr9 104394427 104395051 -37876393 + L1PA3 LINE L1 5526 6149 -6 23 68 0 0 chr9 104395052 104395096 -37876348 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr9 104395361 104395390 -37876054 + AT_rich Low_complexity Low_complexity 1 29 0 215 302 164 26 chr9 104395642 104395758 -37875686 + L2 LINE L2 3177 3308 -5 318 239 109 11 chr9 104396822 104396914 -37874530 + L1MC4 LINE L1 6603 6703 -1339 225 109 0 0 chr9 104396916 104396962 -37874482 - LTR66 LTR ERVL -171 439 394 322 253 51 0 chr9 104397045 104397124 -37874320 - L1MC4 LINE L1 -1342 6700 6618 1728 206 21 21 chr9 104397136 104397525 -37873919 - MLT1B LTR MaLR 0 390 2 502 191 0 140 chr9 104397549 104397603 -37873841 - L1MA10 LINE L1 -8 6326 6273 558 260 37 84 chr9 104397603 104397926 -37873518 - L1ME1 LINE L1 -31 6135 5828 238 290 32 0 chr9 104397926 104397988 -37873456 + L2 LINE L2 3209 3272 0 182 261 22 0 chr9 104398233 104398279 -37873165 - L2 LINE L2 -985 2329 2283 600 285 98 61 chr9 104398532 104399071 -37872373 - HAL1 LINE L1 -1063 1444 841 3230 143 37 3 chr9 104399498 104400070 -37871374 - L1MA4A LINE L1 -14 6289 5699 622 216 14 27 chr9 104400475 104400520 -37870924 + MLT1E2 LTR MaLR 481 525 -101 1851 152 169 5 chr9 104400520 104400888 -37870556 + MSTA LTR MaLR 1 428 0 622 216 14 27 chr9 104400888 104400990 -37870454 + MLT1E2 LTR MaLR 525 626 0 1994 178 22 6 chr9 104401297 104401656 -37869788 + MLT1A1 LTR MaLR 1 365 0 554 339 26 0 chr9 104401696 104401891 -37869553 + MLT1I LTR MaLR 206 405 -4 237 232 71 0 chr9 104402152 104402208 -37869236 - MER5B DNA MER1_type -1 177 118 744 321 12 21 chr9 104403006 104403249 -37868195 + MLT1I LTR MaLR 92 332 -77 1609 183 16 61 chr9 104404028 104404340 -37867104 - AluJo SINE Alu -14 298 1 1080 244 117 49 chr9 104404375 104404801 -37866643 - MER77 LTR ERV1 -6 599 145 332 318 74 7 chr9 104405262 104405345 -37866099 - L3 LINE CR1 -820 757 681 530 100 0 0 chr9 104405345 104405425 -37866019 - MADE1 DNA Mariner 0 80 1 332 318 74 7 chr9 104405425 104405489 -37865955 - L3 LINE CR1 -896 681 600 187 306 0 0 chr9 104406574 104406623 -37864821 + MER5B DNA MER1_type 1 49 -129 1885 187 97 127 chr9 104408782 104408920 -37862524 + MER72 LTR ERV1 14 155 -567 2433 131 48 31 chr9 104408920 104409341 -37862103 - MSTA LTR MaLR 0 428 1 1885 187 97 127 chr9 104409341 104409933 -37861511 + MER72 LTR ERV1 155 722 0 591 308 61 73 chr9 104410538 104411031 -37860413 + L2 LINE L2 2827 3313 0 1847 177 6 14 chr9 104412172 104412516 -37858928 + MER47A DNA MER2_type 26 366 0 195 261 0 0 chr9 104413555 104413624 -37857820 + CT-rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr9 104414058 104414081 -37857363 + AT_rich Low_complexity Low_complexity 1 23 0 833 231 42 69 chr9 104414921 104415178 -37856266 + MIR SINE MIR 15 262 0 737 291 41 23 chr9 104415180 104415400 -37856044 + MIR SINE MIR 12 235 -27 21 0 0 0 chr9 104415571 104415592 -37855852 + AT_rich Low_complexity Low_complexity 1 21 0 43 35 0 0 chr9 104415650 104415707 -37855737 + AT_rich Low_complexity Low_complexity 1 57 0 252 285 88 36 chr9 104416025 104416162 -37855282 - L2 LINE L2 -456 2858 2715 22 0 0 0 chr9 104416278 104416300 -37855144 + AT_rich Low_complexity Low_complexity 1 22 0 780 165 89 6 chr9 104416316 104416474 -37854970 + L1MC1 LINE L1 6163 6333 0 361 226 45 73 chr9 104416506 104416622 -37854822 - L1ME4a LINE L1 -255 5866 5755 1941 130 10 20 chr9 104416622 104416915 -37854529 + AluSx SINE Alu 7 296 -16 361 226 45 73 chr9 104416915 104416975 -37854469 - L1ME4a LINE L1 -366 5755 5695 183 305 68 0 chr9 104417780 104417839 -37853605 + MIR SINE MIR 80 142 -120 306 148 0 0 chr9 104417995 104418049 -37853395 + (T)n Simple_repeat Simple_repeat 1 54 0 376 299 107 21 chr9 104418292 104418479 -37852965 + MIR SINE MIR 26 228 -34 566 275 110 62 chr9 104418510 104418866 -37852578 - L2 LINE L2 0 3313 2941 201 378 14 14 chr9 104419692 104419766 -37851678 + L2 LINE L2 3141 3214 -58 22 0 0 0 chr9 104420034 104420056 -37851388 + AT_rich Low_complexity Low_complexity 1 22 0 277 354 53 57 chr9 104421015 104421224 -37850220 + MIR SINE MIR 5 212 -50 24 53 0 0 chr9 104421244 104421282 -37850162 + AT_rich Low_complexity Low_complexity 1 38 0 297 331 62 25 chr9 104423224 104423384 -37848060 - MER5A DNA MER1_type -23 166 1 212 233 33 33 chr9 104424203 104424263 -37847181 - L2 LINE L2 0 3313 3254 390 151 0 0 chr9 104424704 104424777 -37846667 + (CA)n Simple_repeat Simple_repeat 1 73 0 330 326 64 5 chr9 104425266 104425453 -37845991 - L2 LINE L2 -286 3027 2830 3081 224 62 28 chr9 104425895 104426255 -37845189 + L1ME1 LINE L1 4904 5250 -916 2575 137 69 88 chr9 104426255 104426789 -37844655 - MER1A DNA MER1_type 0 527 4 3081 224 62 28 chr9 104426789 104427650 -37843794 + L1ME1 LINE L1 5250 6161 -5 2062 133 0 0 chr9 104427831 104428133 -37843311 + AluSx SINE Alu 1 302 -10 636 304 71 47 chr9 104428216 104428795 -37842649 + L1MC4a LINE L1 5296 5822 -299 369 0 0 0 chr9 104429361 104429402 -37842042 + (CA)n Simple_repeat Simple_repeat 2 42 0 2138 127 0 13 chr9 104429530 104429838 -37841606 + AluSq SINE Alu 1 304 -9 27 96 0 0 chr9 104430766 104430849 -37840595 + AT_rich Low_complexity Low_complexity 1 83 0 24 32 0 0 chr9 104431494 104431525 -37839919 + AT_rich Low_complexity Low_complexity 1 31 0 22 106 0 0 chr9 104431565 104431650 -37839794 + AT_rich Low_complexity Low_complexity 1 85 0 1066 290 71 16 chr9 104431728 104432307 -37839137 - L1ME3A LINE L1 -275 5895 5285 * 2297 160 24 75 chr9 104432304 104432400 -37839044 - L1MD2 LINE L1 -1 6358 6259 1697 202 12 12 chr9 104432400 104432736 -37838708 - MER1B DNA MER1_type -1 336 1 2297 160 24 75 chr9 104432736 104433184 -37838260 - L1MD2 LINE L1 -100 6259 5842 4865 41 0 0 chr9 104434253 104434878 -37836566 - L1PA3 LINE L1 0 6155 5547 437 292 19 37 chr9 104434923 104435084 -37836360 - MIR3 SINE MIR -4 204 47 476 327 111 14 chr9 104436181 104436478 -37834966 + LTR16C LTR ERVL 150 475 -16 3214 138 46 11 chr9 104436787 104437378 -37834066 - LTR38B LTR ERV1 0 611 1 396 254 31 23 chr9 104437506 104437636 -37833808 - L1ME4a LINE L1 0 6121 5991 631 214 132 13 chr9 104438028 104438187 -37833257 + MER45A DNA AcHobo 1 178 0 889 215 117 70 chr9 104440487 104440557 -37830887 + MER2 DNA MER2_type 24 89 -256 2839 6 0 0 chr9 104440557 104440869 -37830575 + AluYb8 SINE Alu 1 312 -6 889 215 117 70 chr9 104440869 104441096 -37830348 + MER2 DNA MER2_type 89 335 -10 4961 206 105 85 chr9 104441135 104442037 -37829407 + L1MDa LINE L1 17 969 -5571 195 69 0 0 chr9 104442037 104442066 -37829378 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4961 206 105 85 chr9 104442066 104442840 -37828604 + L1MDa LINE L1 969 1726 -4814 764 179 26 0 chr9 104442990 104443141 -37828303 + MLT1C LTR MaLR 268 422 -45 53 40 0 0 chr9 104443962 104444036 -37827408 + AT_rich Low_complexity Low_complexity 1 74 0 1950 174 0 3 chr9 104444205 104444561 -37826883 - L1MB7 LINE L1 -9 6175 5821 236 222 0 0 chr9 104446055 104446100 -37825344 + Tigger2 DNA MER2_type 1 45 -2673 1168 144 0 6 chr9 104446120 104446300 -37825144 - AluSg/x SINE Alu 0 312 134 1591 131 27 143 chr9 104446320 104446726 -37824718 + Tigger2 DNA MER2_type 2334 2692 -26 28 29 0 0 chr9 104446871 104446906 -37824538 + AT_rich Low_complexity Low_complexity 1 35 0 291 339 44 104 chr9 104447092 104447408 -37824036 - L2 LINE L2 -21 3251 2955 1493 124 69 4 chr9 104447715 104448107 -37823337 + L1M2 LINE L1 5112 5524 -743 750 164 20 0 chr9 104448107 104448251 -37823193 + L1MA8 LINE L1 6140 6288 -3 216 281 62 0 chr9 104448288 104448352 -37823092 + MIR SINE MIR 45 112 -150 267 329 77 35 chr9 104448697 104448840 -37822604 + MIR SINE MIR 14 162 -100 463 301 124 22 chr9 104448855 104449081 -37822363 - MIR SINE MIR -12 250 2 213 222 0 0 chr9 104450577 104450622 -37820822 - MIR SINE MIR -9 253 209 241 313 78 8 chr9 104450700 104450828 -37820616 - MIR SINE MIR -70 192 56 1939 114 52 0 chr9 104451338 104451627 -37819817 + AluSp SINE Alu 1 304 -9 306 299 85 66 chr9 104451927 104452198 -37819246 - L1M4 LINE L1 -917 5229 4954 288 277 20 20 chr9 104452695 104452796 -37818648 - MIR3 SINE MIR -3 205 105 42890 50 2 0 chr9 104452979 104459118 -37812326 - L1PA4 LINE L1 -3 6152 1 25 31 0 0 chr9 104459571 104459603 -37811841 + AT_rich Low_complexity Low_complexity 1 32 0 806 190 86 6 chr9 104461978 104462152 -37809292 + LTR41 LTR ERVL 1 188 -585 331 250 111 60 chr9 104462594 104462810 -37808634 + LTR41 LTR ERVL 516 742 -31 1146 135 0 65 chr9 104462838 104463067 -37808377 + L1PA13 LINE L1 5947 6160 -3 205 186 23 0 chr9 104464191 104464234 -37807210 + CT-rich Low_complexity Low_complexity 1 44 0 986 329 53 11 chr9 104464523 104464973 -37806471 + LTR16C LTR ERVL 1 469 -22 713 312 64 26 chr9 104464987 104465483 -37805961 + HERVL LTR ERVL 4191 4702 -783 279 243 48 58 chr9 104466265 104466368 -37805076 + LTR33 LTR ERVL 411 512 -9 552 287 55 0 chr9 104467115 104467279 -37804165 - L1MC4 LINE L1 -1077 6965 6793 229 148 49 16 chr9 104467316 104467377 -37804067 + (TA)n Simple_repeat Simple_repeat 2 64 0 21744 186 13 30 chr9 104467456 104473365 -37798079 - L1PA12 LINE L1 -1 7605 997 1785 167 33 38 chr9 104473365 104473731 -37797713 - THE1B LTR MaLR 0 364 1 21744 186 13 30 chr9 104473731 104473931 -37797513 - L1PA12 LINE L1 -6609 997 795 182 366 50 20 chr9 104474423 104474524 -37796920 - MIR SINE MIR -67 141 38 374 257 125 21 chr9 104474665 104474718 -37796726 - MIR SINE MIR -5 257 211 2297 135 8 6 chr9 104474718 104475081 -37796363 + THE1B LTR MaLR 1 364 0 374 257 125 21 chr9 104475081 104475171 -37796273 - MIR SINE MIR -51 211 99 424 304 96 92 chr9 104475290 104475886 -37795558 - L1ME4a LINE L1 -120 6395 5798 2595 241 45 63 chr9 104475886 104477213 -37794231 - L1MDa LINE L1 -2852 3688 2384 446 219 55 0 chr9 104477419 104477547 -37793897 + MER66B LTR ERV1 305 439 -47 2079 183 169 48 chr9 104477694 104477897 -37793547 + MER66-int LTR ERV1 459 636 -6040 2103 119 0 6 chr9 104477897 104478209 -37793235 - AluSx SINE Alu -2 310 1 2079 183 169 48 chr9 104478209 104478590 -37792854 + MER66-int LTR ERV1 636 1114 -5562 470 258 26 77 chr9 104478626 104478820 -37792624 + MER66-int LTR ERV1 2917 3100 -3576 4924 172 38 18 chr9 104478914 104479820 -37791624 + MER66-int LTR ERV1 1212 2135 -4541 3457 266 59 70 chr9 104479826 104481660 -37789784 - L1M4 LINE L1 -1617 4529 2716 222 322 0 0 chr9 104481666 104481725 -37789719 - L2 LINE L2 -18 3254 3196 595 295 59 0 chr9 104482313 104482523 -37788921 + MIR SINE MIR 25 248 -14 418 235 154 22 chr9 104482769 104482998 -37788446 - LTR41 LTR ERVL 0 767 453 429 291 39 11 chr9 104483341 104483520 -37787924 - LTR41 LTR ERVL -588 185 2 207 103 0 26 chr9 104483814 104483853 -37787591 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 224 197 0 15 chr9 104485543 104485609 -37785835 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 342 222 40 36 chr9 104485609 104485746 -37785698 + L1MC4 LINE L1 1978 6998 -1324 490 195 85 8 chr9 104486509 104486627 -37784817 - FLAM_C SINE Alu -16 127 1 219 245 19 0 chr9 104486952 104487005 -37784439 + (CATA)n Simple_repeat Simple_repeat 3 56 0 435 240 189 42 chr9 104487079 104487296 -37784148 - L1ME3A LINE L1 -301 5869 5621 187 401 106 13 chr9 104487334 104487571 -37783873 + L2 LINE L2 1868 2126 -1188 660 278 112 36 chr9 104487575 104487852 -37783592 - MLT1H1 LTR MaLR -4 551 254 424 328 42 44 chr9 104487877 104488310 -37783134 - L1ME3A LINE L1 -747 5399 5111 599 160 72 0 chr9 104489050 104489175 -37782269 - L1MA1 LINE L1 -161 6141 6008 1154 87 0 6 chr9 104489178 104489339 -37782105 + L1MA1 LINE L1 6137 6296 -6 224 330 34 11 chr9 104489789 104489877 -37781567 + MIR SINE MIR 158 247 -15 231 313 12 0 chr9 104491533 104491613 -37779831 - L1ME3A LINE L1 -3379 2767 2687 881 253 190 21 chr9 104491763 104492190 -37779254 - L1MC4 LINE L1 -664 7378 6880 701 335 9 0 chr9 104492636 104492848 -37778596 + MIR SINE MIR 48 261 -1 25 31 0 0 chr9 104492854 104492886 -37778558 + AT_rich Low_complexity Low_complexity 1 32 0 373 299 29 22 chr9 104492920 104493057 -37778387 - L2 LINE L2 0 3313 3176 316 262 136 72 chr9 104493065 104493286 -37778158 - L1ME3A LINE L1 0 6170 5936 373 121 0 0 chr9 104493526 104493584 -37777860 - MLT2A2 LTR ERVL 0 453 396 588 136 0 0 chr9 104493591 104493679 -37777765 - MLT2A2 LTR ERVL -365 88 1 585 272 27 16 chr9 104493679 104493863 -37777581 - L1ME3A LINE L1 -447 5723 5538 244 167 0 74 chr9 104494418 104494472 -37776972 - MLT1J2 LTR MaLR -4 446 397 411 21 0 0 chr9 104494876 104494924 -37776520 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr9 104494969 104494998 -37776446 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 104495216 104495236 -37776208 + (TC)n Simple_repeat Simple_repeat 1 20 0 315 0 0 0 chr9 104495239 104495274 -37776170 + (TG)n Simple_repeat Simple_repeat 2 36 0 1324 193 73 80 chr9 104496139 104496564 -37774880 - MLT1D LTR MaLR -61 444 23 2510 212 4 2 chr9 104496813 104497337 -37774107 + L1P LINE L1 3926 4450 -1696 1993 123 0 7 chr9 104497520 104497805 -37773639 - AluSx SINE Alu -20 292 10 555 345 6 11 chr9 104498011 104498185 -37773259 + MER5B DNA MER1_type 1 173 -5 23 0 0 0 chr9 104498995 104499018 -37772426 + AT_rich Low_complexity Low_complexity 1 23 0 5904 152 13 32 chr9 104499213 104500279 -37771165 + Tigger1 DNA MER2_type 1 1046 -1372 3791 164 30 17 chr9 104500247 104500947 -37770497 + Tigger1 DNA MER2_type 1710 2418 0 * 657 235 29 49 chr9 104501176 104501231 -37770213 - MER67D LTR ERV1 -9 505 450 1811 171 0 0 chr9 104501231 104501518 -37769926 - AluSx SINE Alu -25 287 1 657 235 29 49 chr9 104501518 104501666 -37769778 - MER67D LTR ERV1 -64 450 306 485 255 0 0 chr9 104501718 104501820 -37769624 - MER67D LTR ERV1 -209 305 204 260 310 14 0 chr9 104501927 104501998 -37769446 - HERVL LTR ERVL -3693 1961 1890 1450 172 39 7 chr9 104502119 104502398 -37769046 - L1MC/D LINE L1 -766 5567 5280 1351 75 43 0 chr9 104502368 104502555 -37768889 - L1PA5 LINE L1 -3 6151 5957 * 757 282 66 0 chr9 104502561 104502802 -37768642 - L1MC/D LINE L1 -833 5313 5057 358 191 0 96 chr9 104502810 104502837 -37768607 + L1M4 LINE L1 4964 4992 -1154 813 153 82 0 chr9 104502837 104503033 -37768411 + L1MA8 LINE L1 6074 6285 -6 358 191 0 96 chr9 104503033 104503120 -37768324 + L1M4 LINE L1 4992 5067 -1079 1964 260 30 7 chr9 104503121 104503678 -37767766 - L1ME1 LINE L1 -20 6146 5577 6464 202 29 6 chr9 104503708 104505933 -37765511 - L1PA15 LINE L1 -2 6163 3903 2624 26 0 0 chr9 104505933 104506239 -37765205 - L1PA3 LINE L1 0 6155 5844 183 80 0 0 chr9 104506342 104506367 -37765077 + (C)n Simple_repeat Simple_repeat 1 25 0 243 164 0 16 chr9 104506532 104506593 -37764851 + L1MA1 LINE L1 6243 6302 0 419 237 10 10 chr9 104506610 104506707 -37764737 - MER7A DNA MER2_type -251 95 1 461 321 92 11 chr9 104506870 104507054 -37764390 + MIR SINE MIR 53 251 -11 991 184 13 43 chr9 104507642 104507876 -37763568 - L1 LINE L1 -996 5150 4924 5704 102 38 6 chr9 104507877 104509026 -37762418 - L1PA13 LINE L1 -3 6160 5026 520 101 56 0 chr9 104509026 104509115 -37762329 + L1PA13 LINE L1 6067 6160 -3 2028 202 7 2 chr9 104509115 104509526 -37761918 - L1PA13 LINE L1 -1119 5027 4615 2066 146 24 0 chr9 104509615 104509944 -37761500 + L1P LINE L1 3638 3974 -2172 186 133 0 0 chr9 104510368 104510398 -37761046 + (CATATA)n Simple_repeat Simple_repeat 5 34 0 225 307 9 9 chr9 104510408 104510522 -37760922 + (TA)n Simple_repeat Simple_repeat 1 114 0 606 169 116 17 chr9 104511564 104511736 -37759708 - MER53 DNA DNA 0 189 1 180 357 80 14 chr9 104512141 104512354 -37759090 - L2 LINE L2 -843 2471 2245 318 80 0 0 chr9 104512372 104512422 -37759022 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 660 367 110 21 chr9 104513589 104514547 -37756897 - L2 LINE L2 -1963 1351 309 24 32 0 0 chr9 104514965 104514996 -37756448 + AT_rich Low_complexity Low_complexity 1 31 0 485 326 14 7 chr9 104515609 104515753 -37755691 - MER5B DNA MER1_type -1 177 33 200 347 72 36 chr9 104515610 104515777 -37755667 + MER5A DNA MER1_type 17 189 0 * 356 393 55 16 chr9 104516635 104516983 -37754461 + MLT1K LTR MaLR 2 414 -174 186 133 0 0 chr9 104517120 104517150 -37754294 + (TCTCC)n Simple_repeat Simple_repeat 1 30 0 1935 146 7 0 chr9 104517150 104517452 -37753992 - AluSx SINE Alu -8 304 1 2724 189 25 25 chr9 104518319 104518783 -37752661 + L1MA7 LINE L1 5662 6128 -163 2032 145 0 0 chr9 104518783 104519093 -37752351 - AluSx SINE Alu -2 310 1 2724 189 25 25 chr9 104519093 104519256 -37752188 + L1MA7 LINE L1 6127 6289 -2 1667 228 42 40 chr9 104519700 104520204 -37751240 + MLT1D LTR MaLR 1 505 0 22 56 0 0 chr9 104521022 104521058 -37750386 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr9 104521303 104521347 -37750097 + AT_rich Low_complexity Low_complexity 1 44 0 2808 16 11 0 chr9 104521987 104522428 -37749016 - L1P1 LINE L1 -649 5506 5061 9025 236 20 45 chr9 104522428 104525549 -37745895 - L1PA13 LINE L1 -2223 5361 2319 384 360 17 28 chr9 104526372 104526725 -37744719 - L1PA13 LINE L1 -7226 355 7 1048 244 4 17 chr9 104526729 104527038 -37744406 - L1M3 LINE L1 -778 5556 5259 498 234 0 0 chr9 104527538 104527666 -37743778 - L1MA7 LINE L1 0 6291 6164 441 275 7 36 chr9 104527711 104527849 -37743595 + LTR27 LTR ERV1 501 634 -2 3434 167 13 18 chr9 104527854 104528553 -37742891 + L1MA8 LINE L1 5221 5917 -374 1904 163 41 32 chr9 104528675 104529140 -37742304 + L1MA8 LINE L1 5819 6287 -4 229 245 85 0 chr9 104529652 104529746 -37741698 + L1PA15-16 LINE L1 2545 2646 -4203 1069 256 68 40 chr9 104529882 104530381 -37741063 + L1MC5 LINE L1 7014 7526 -435 22 0 0 0 chr9 104530394 104530416 -37741028 + AT_rich Low_complexity Low_complexity 1 22 0 485 284 65 5 chr9 104530723 104530924 -37740520 - L1ME LINE L1 -354 5767 5555 3640 221 45 12 chr9 104532483 104533285 -37738159 - L1PA12 LINE L1 -6750 831 4 280 256 54 77 chr9 104533391 104533559 -37737885 - L1MC4a LINE L1 -1340 6468 6305 364 246 184 31 chr9 104533634 104533862 -37737582 - L1MC4a LINE L1 -1633 6175 5913 623 336 101 29 chr9 104534053 104534278 -37737166 - L1ME LINE L1 -2229 3917 3710 1147 174 12 27 chr9 104534278 104534536 -37736908 - L1MA4 LINE L1 -6 6294 6041 623 336 101 29 chr9 104534536 104535042 -37736402 - L1ME LINE L1 -2436 3710 3133 342 283 70 70 chr9 104535111 104535369 -37736075 - L1ME LINE L1 -3114 3032 2775 2244 108 3 0 chr9 104536876 104537182 -37734262 - AluSp SINE Alu -6 307 1 225 0 0 0 chr9 104537248 104537273 -37734171 + (T)n Simple_repeat Simple_repeat 1 25 0 367 322 35 0 chr9 104537345 104537460 -37733984 + L2 LINE L2 2262 2380 -934 314 272 146 13 chr9 104537652 104537810 -37733634 + MIR SINE MIR 28 206 -56 23 33 0 0 chr9 104537950 104537980 -37733464 + AT_rich Low_complexity Low_complexity 1 30 0 1095 160 16 26 chr9 104539220 104539414 -37732030 - MER31A LTR ERV1 -276 209 18 1247 310 92 71 chr9 104539525 104540559 -37730885 + L1MDa LINE L1 1390 2480 -4241 1633 178 0 14 chr9 104540559 104540845 -37730599 + AluSx SINE Alu 1 282 -30 1247 310 92 71 chr9 104540845 104541184 -37730260 + L1MDa LINE L1 2480 2810 -3911 183 290 94 36 chr9 104542145 104542283 -37729161 + MIR SINE MIR 67 212 -50 423 352 33 16 chr9 104542558 104542740 -37728704 - MIR SINE MIR -14 248 64 415 274 89 32 chr9 104542753 104542910 -37728534 + MLT1J LTR MaLR 131 296 -215 1427 124 55 0 chr9 104543210 104543428 -37728016 + MER30 DNA MER1_type 1 230 0 269 327 53 0 chr9 104543657 104543770 -37727674 + L1ME LINE L1 5476 5594 -572 4710 169 15 23 chr9 104543777 104544450 -37726994 - L1PA16 LINE L1 -16 6150 5485 1578 196 7 13 chr9 104544450 104544756 -37726688 - AluJb SINE Alu -5 307 4 4710 169 15 23 chr9 104544756 104545103 -37726341 - L1PA16 LINE L1 -681 5485 5137 3515 207 5 16 chr9 104545090 104545911 -37725533 + L1PA16 LINE L1 4320 5131 -1015 * 558 395 39 11 chr9 104546528 104546910 -37724534 - LTR16C LTR ERVL 0 491 99 576 70 0 0 chr9 104547038 104547124 -37724320 + (TG)n Simple_repeat Simple_repeat 2 87 0 4234 167 26 0 chr9 104548389 104549185 -37722259 - L1MA5 LINE L1 -1 6299 5483 3902 241 22 19 chr9 104549189 104550351 -37721093 - L1PA13 LINE L1 -4361 2436 1264 3690 191 17 38 chr9 104550402 104551431 -37720013 - L1MC/D LINE L1 -743 5403 4530 1517 148 50 73 chr9 104551431 104551815 -37719629 + THE1C LTR MaLR 1 375 0 3690 191 17 38 chr9 104551815 104551845 -37719599 - L1MC/D LINE L1 -1616 4530 4501 4014 197 5 42 chr9 104551848 104552801 -37718643 + L1 LINE L1 3252 4169 -1977 406 129 24 12 chr9 104552815 104552900 -37718544 + GA-rich Low_complexity Low_complexity 1 86 0 1511 189 12 3 chr9 104552905 104553228 -37718216 + L1 LINE L1 4166 4491 -1655 1416 285 110 18 chr9 104553479 104554070 -37717374 + L2 LINE L2 2467 3110 -203 1712 261 40 38 chr9 104554088 104556160 -37715284 - L1ME1 LINE L1 -7 6159 4013 319 287 184 29 chr9 104560335 104560471 -37710973 + MER5A DNA MER1_type 33 189 0 236 339 16 0 chr9 104560648 104560710 -37710734 + L2 LINE L2 3195 3257 -15 25 0 0 0 chr9 104560973 104560998 -37710446 + AT_rich Low_complexity Low_complexity 1 25 0 383 216 31 21 chr9 104561861 104561958 -37709486 - LTR33 LTR ERVL 0 521 424 341 234 0 0 chr9 104562115 104562179 -37709265 - MER20 DNA MER1_type -155 64 1 5456 38 0 3 chr9 104562995 104563657 -37707787 - L1PA4 LINE L1 0 6155 5496 25 0 0 0 chr9 104563974 104563999 -37707445 + AT_rich Low_complexity Low_complexity 1 25 0 194 287 92 46 chr9 104564368 104564455 -37706989 - MIR SINE MIR -95 113 23 2110 123 3 0 chr9 104564932 104565225 -37706219 - AluSg SINE Alu -16 294 1 14204 68 7 1 chr9 104565394 104568062 -37703382 - L1PA6 LINE L1 -2 6152 3475 19775 122 13 11 chr9 104568071 104571155 -37700289 - L1PA6 LINE L1 -3047 3099 11 267 311 76 49 chr9 104571206 104571431 -37700013 - L2 LINE L2 -4 3309 3079 662 316 66 35 chr9 104571967 104572315 -37699129 + L2 LINE L2 2954 3312 -1 22 0 0 0 chr9 104572950 104572972 -37698472 + AT_rich Low_complexity Low_complexity 1 22 0 2131 225 9 69 chr9 104573291 104573551 -37697893 + MLT1F LTR MaLR 1 208 -334 1475 247 40 3 chr9 104573551 104573903 -37697541 - MLT1A1 LTR MaLR 0 365 1 2131 225 9 69 chr9 104573903 104574219 -37697225 + MLT1F LTR MaLR 208 542 0 252 353 46 11 chr9 104574283 104574448 -37696996 - MIR SINE MIR -75 187 20 189 143 32 32 chr9 104574571 104574634 -37696810 + CT-rich Low_complexity Low_complexity 2 64 0 23 54 0 0 chr9 104575503 104575540 -37695904 + AT_rich Low_complexity Low_complexity 1 37 0 1733 331 99 34 chr9 104576495 104576833 -37694611 + L2 LINE L2 1497 1812 -1501 2140 127 0 6 chr9 104576833 104577147 -37694297 - AluSx SINE Alu 0 312 1 1733 331 99 34 chr9 104577147 104577260 -37694184 + L2 LINE L2 1812 1916 -1397 1962 142 0 3 chr9 104577260 104577563 -37693881 - AluSx SINE Alu -8 304 3 1733 331 99 34 chr9 104577563 104578568 -37692876 + L2 LINE L2 1916 3042 -271 2336 80 3 6 chr9 104578725 104579036 -37692408 + AluY SINE Alu 1 310 -1 213 264 57 0 chr9 104579099 104579152 -37692292 + L2 LINE L2 3258 3313 0 921 200 55 5 chr9 104580273 104580473 -37690971 + L1PB4 LINE L1 5947 6156 0 221 245 0 20 chr9 104580963 104581012 -37690432 + (TG)n Simple_repeat Simple_repeat 1 48 0 1739 195 40 73 chr9 104581023 104581501 -37689943 - MLT1C LTR MaLR 0 467 6 229 211 39 0 chr9 104582329 104582381 -37689063 - L2 LINE L2 -2 3270 3217 2036 86 0 0 chr9 104582691 104582948 -37688496 + AluSg SINE Alu 53 309 -1 37 0 0 0 chr9 104583049 104583086 -37688358 + AT_rich Low_complexity Low_complexity 1 37 0 50 59 0 0 chr9 104583456 104583541 -37687903 + AT_rich Low_complexity Low_complexity 1 85 0 224 100 25 0 chr9 104584296 104584336 -37687108 + (TA)n Simple_repeat Simple_repeat 1 41 0 763 201 71 7 chr9 104585187 104585470 -37685974 - L1 LINE L1 -2754 3392 3092 * 967 247 59 7 chr9 104585468 104585772 -37685672 + L1 LINE L1 2759 3078 -3068 21 0 0 0 chr9 104586953 104586974 -37684470 + AT_rich Low_complexity Low_complexity 1 21 0 319 363 76 30 chr9 104588184 104588394 -37683050 - L2 LINE L2 -15 3257 3027 1673 233 73 21 chr9 104588394 104588874 -37682570 - MLT1D LTR MaLR 0 505 1 319 363 76 30 chr9 104588874 104588966 -37682478 - L2 LINE L2 -245 3027 2941 330 269 0 0 chr9 104589149 104589227 -37682217 - MIR SINE MIR -27 235 158 405 0 0 0 chr9 104589241 104589286 -37682158 + (CA)n Simple_repeat Simple_repeat 2 46 0 743 266 11 103 chr9 104589286 104589665 -37681779 - MLT2C1 LTR ERVL -41 356 13 1848 134 10 29 chr9 104590256 104590569 -37680875 - AluSx SINE Alu -3 309 3 260 252 28 91 chr9 104590712 104590855 -37680589 - LTR67 LTR ERVL -17 540 407 1756 243 74 51 chr9 104591022 104591630 -37679814 - MLT1E3 LTR MaLR -2 622 1 560 229 82 32 chr9 104592908 104593203 -37678241 + L1MC3 LINE L1 1452 1897 -4529 * 4178 150 48 13 chr9 104593199 104594003 -37677441 - L1MA5A LINE L1 -255 6042 5211 1596 102 4 0 chr9 104594004 104594239 -37677205 + L1MA5A LINE L1 6050 6285 -12 922 225 149 8 chr9 104594249 104594604 -37676840 + L1MC3 LINE L1 1809 2213 -4213 553 245 19 0 chr9 104594642 104594797 -37676647 + L1MC3 LINE L1 2487 2644 -3782 1769 236 80 51 chr9 104594798 104595347 -37676097 + LTR48B LTR ERV1 1 572 -72 7845 13 0 0 chr9 104595347 104596310 -37675134 - L1PA3 LINE L1 0 6155 5193 1769 236 80 51 chr9 104596310 104596386 -37675058 + LTR48B LTR ERV1 572 644 0 954 290 81 51 chr9 104596388 104597150 -37674294 + L1MC3 LINE L1 2644 3428 -2998 3541 263 108 14 chr9 104597191 104598707 -37672737 + L1MC3 LINE L1 3838 5495 -931 1005 178 67 14 chr9 104598719 104598927 -37672517 + L1MC3 LINE L1 5682 5900 -2165 35 54 0 0 chr9 104598928 104598984 -37672460 + AT_rich Low_complexity Low_complexity 1 56 0 657 220 39 69 chr9 104598985 104599285 -37672159 + L1MC3 LINE L1 6071 7276 -789 278 233 78 62 chr9 104600306 104600435 -37671009 + MLT1I LTR MaLR 1 131 -278 250 195 117 26 chr9 104600758 104600835 -37670609 + MLT-int LTR MaLR 3 86 -1649 238 286 39 0 chr9 104601930 104602007 -37669437 + MLT1G LTR MaLR 495 574 -16 21 0 0 0 chr9 104602136 104602157 -37669287 + AT_rich Low_complexity Low_complexity 1 21 0 260 378 9 0 chr9 104602616 104602727 -37668717 + L3 LINE CR1 1401 1512 -65 189 316 114 0 chr9 104602983 104603062 -37668382 - L2 LINE L2 -53 3219 3132 727 313 63 19 chr9 104603547 104603863 -37667581 + LTR16A LTR ERVL 121 450 0 432 289 91 19 chr9 104603873 104604081 -37667363 + HERV16 LTR ERVL 12 234 -4762 998 329 31 26 chr9 104604146 104604571 -37666873 + HERV16 LTR ERVL 382 808 -4188 447 306 15 0 chr9 104604759 104604893 -37666551 + HERV16 LTR ERVL 999 1134 -3862 729 343 41 37 chr9 104605394 104605905 -37665539 + HERVL LTR ERVL 4170 4682 -972 311 235 31 0 chr9 104605994 104606092 -37665352 - MER53 DNA DNA -88 101 1 442 267 36 30 chr9 104606094 104606259 -37665185 + LTR16A LTR ERVL 284 449 -1 194 172 0 0 chr9 104606570 104606599 -37664845 - L3 LINE CR1 -7 1570 1542 6817 173 28 28 chr9 104607937 104610218 -37661226 + L1MA8 LINE L1 3980 6267 -24 35 41 0 0 chr9 104610226 104610275 -37661169 + AT_rich Low_complexity Low_complexity 1 49 0 501 343 84 40 chr9 104610424 104610829 -37660615 + L1MEd LINE L1 248 670 -5449 21 0 0 0 chr9 104611048 104611069 -37660375 + AT_rich Low_complexity Low_complexity 1 21 0 249 294 168 0 chr9 104611119 104611238 -37660206 + L2 LINE L2 3134 3272 0 342 334 24 8 chr9 104611469 104611612 -37659832 - MLT1J2 LTR MaLR -236 210 66 311 261 102 76 chr9 104612590 104612770 -37658674 + MIR SINE MIR 12 196 -61 325 165 15 18 chr9 104613337 104613415 -37658029 - MLT1C LTR MaLR 0 467 315 521 119 0 119 chr9 104613415 104613533 -37657911 - L1P5 LINE L1 -565 7029 6926 12221 257 23 14 chr9 104613569 104614338 -37657106 - L1P5 LINE L1 -937 6647 5887 405 0 0 0 chr9 104614338 104614383 -37657061 + (TG)n Simple_repeat Simple_repeat 2 46 0 12221 257 23 14 chr9 104614383 104617743 -37653701 - L1P5 LINE L1 -1697 5887 2461 442 102 5 70 chr9 104617744 104617930 -37653514 + (TA)n Simple_repeat Simple_repeat 2 175 0 225 147 0 40 chr9 104617956 104618031 -37653413 + (TA)n Simple_repeat Simple_repeat 2 73 0 279 221 26 13 chr9 104618058 104618135 -37653309 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 1437 182 0 71 chr9 104618135 104618431 -37653013 - AluJb SINE Alu -32 280 6 439 312 20 15 chr9 104618444 104618646 -37652798 - L1P5 LINE L1 -5146 2435 2233 200 83 0 28 chr9 104619409 104619445 -37651999 + (TAA)n Simple_repeat Simple_repeat 2 36 0 644 217 26 13 chr9 104619841 104619993 -37651451 - LTR33 LTR ERVL 0 521 368 412 332 56 5 chr9 104620099 104620295 -37651149 - ERVL LTR ERVL -501 5263 5058 284 326 11 0 chr9 104620686 104620778 -37650666 + CT-rich Low_complexity Low_complexity 2 94 0 843 335 78 10 chr9 104621186 104621571 -37649873 - LTR33 LTR ERVL -110 411 1 356 274 45 90 chr9 104621724 104621925 -37649519 + HAL1 LINE L1 1846 2037 -470 202 222 0 0 chr9 104621981 104622017 -37649427 + (CA)n Simple_repeat Simple_repeat 2 37 0 3895 158 34 58 chr9 104622077 104622686 -37648758 - LTR1 LTR ERV1 0 785 162 201 39 0 0 chr9 104622686 104622712 -37648732 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6893 55 21 13 chr9 104622716 104623684 -37647760 - L1PA7 LINE L1 -16 6138 5166 3895 158 34 58 chr9 104623684 104623874 -37647570 - LTR1 LTR ERV1 -626 159 1 255 352 14 14 chr9 104625083 104625154 -37646290 - L2 LINE L2 -49 3223 3153 362 283 28 38 chr9 104625647 104625677 -37645767 - MER81 DNA DNA -4 110 81 478 127 0 100 chr9 104625677 104625787 -37645657 - L1PA11 LINE L1 0 6174 6076 362 283 28 38 chr9 104625787 104625862 -37645582 - MER81 DNA DNA -33 81 6 1593 61 5 14 chr9 104626359 104626571 -37644873 - L1PA7 LINE L1 -3 6151 5942 489 72 2 0 chr9 104626571 104626645 -37644799 + L1PA7 LINE L1 5876 5940 -214 314 378 30 12 chr9 104626710 104626874 -37644570 - L1ME LINE L1 -470 5651 5485 334 143 11 77 chr9 104628247 104628275 -37643169 + L1MD3 LINE L1 7911 7939 -56 2156 141 12 3 chr9 104628275 104628615 -37642829 - MER61A LTR ERV1 0 343 1 334 143 11 77 chr9 104628615 104628677 -37642767 + L1MD3 LINE L1 7939 7995 0 277 192 0 0 chr9 104628824 104628876 -37642568 - Alu SINE Alu 0 308 257 1583 154 28 82 chr9 104629101 104629420 -37642024 + AluJo SINE Alu 1 302 -10 2811 118 2 2 chr9 104629813 104630238 -37641206 - L1P LINE L1 -1654 4492 4068 3324 58 0 5 chr9 104630258 104630685 -37640759 - L1PA5 LINE L1 -6 6148 5724 25386 50 5 4 chr9 104630687 104634763 -37636681 - L1PA5 LINE L1 -5 6149 2073 14154 101 11 1 chr9 104634759 104636736 -37634708 + L1PA5 LINE L1 67 2063 -4083 * 2508 150 7 0 chr9 104636735 104637154 -37634290 - L1P LINE L1 -2062 4084 3663 * 6008 90 14 33 chr9 104637156 104638830 -37632614 + L1PA8 LINE L1 4507 6168 -4 521 207 0 0 chr9 104638952 104639039 -37632405 - AluS SINE Alu -222 90 4 1353 182 80 22 chr9 104639160 104639435 -37632009 + MSTA LTR MaLR 138 428 0 2138 128 6 0 chr9 104639437 104639758 -37631686 + MSTA-int LTR MaLR 3 325 -1255 2458 134 45 23 chr9 104639759 104640064 -37631380 + MSTA-int LTR MaLR 1131 1451 -129 2228 116 3 0 chr9 104640064 104640366 -37631078 - AluSc SINE Alu -6 303 1 2458 134 45 23 chr9 104640366 104640500 -37630944 + MSTA-int LTR MaLR 1451 1580 0 1862 149 149 11 chr9 104640500 104640876 -37630568 + MSTA LTR MaLR 1 428 0 563 234 39 19 chr9 104640876 104641030 -37630414 + MIR SINE MIR 106 262 0 2023 242 69 41 chr9 104641116 104642038 -37629406 - L1ME1 LINE L1 -26 6534 5596 922 255 71 12 chr9 104642035 104642443 -37629001 - L1ME1 LINE L1 -1308 5232 4801 * 295 207 61 24 chr9 104642509 104642618 -37628826 - L1ME1 LINE L1 -5290 1240 1114 1709 284 56 28 chr9 104643514 104644089 -37627355 - MLT1E LTR MaLR 0 593 3 307 213 16 0 chr9 104645020 104645081 -37626363 + MLT1J2 LTR MaLR 102 163 -287 358 291 71 60 chr9 104645131 104645313 -37626131 + MLT1J2 LTR MaLR 267 450 0 258 203 29 0 chr9 104646726 104646795 -37624649 + L1MC5 LINE L1 7831 7901 -60 405 0 0 0 chr9 104646801 104646846 -37624598 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 1911 155 0 20 chr9 104646846 104647150 -37624294 - AluSx SINE Alu -14 298 1 327 351 55 5 chr9 104647197 104647399 -37624045 - L2 LINE L2 -631 2683 2472 316 344 53 56 chr9 104648178 104648376 -37623068 + L2 LINE L2 3027 3225 -88 1849 157 32 32 chr9 104648376 104648751 -37622693 - THE1C LTR MaLR 0 375 1 316 344 53 56 chr9 104648751 104648837 -37622607 + L2 LINE L2 3225 3310 -3 21 0 0 0 chr9 104649579 104649600 -37621844 + AT_rich Low_complexity Low_complexity 1 21 0 1575 200 91 44 chr9 104649968 104650373 -37621071 + MER54B LTR ERVL 370 793 0 24 0 0 0 chr9 104650718 104650742 -37620702 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 104651011 104651040 -37620404 + AT_rich Low_complexity Low_complexity 1 29 0 2013 184 55 8 chr9 104651068 104651545 -37619899 - L1MA9 LINE L1 0 6312 5814 42295 37 22 1 chr9 104651603 104657623 -37613821 - L1PA3 LINE L1 0 6155 7 3548 193 16 78 chr9 104657631 104658989 -37612455 - L1MA9 LINE L1 -480 5832 4518 235 205 0 103 chr9 104658989 104659067 -37612377 - AluJ/FRAM SINE Alu -2 300 231 3548 193 16 78 chr9 104659067 104659193 -37612251 - L1MA9 LINE L1 -1794 4518 4386 1145 247 7 18 chr9 104659194 104659473 -37611971 + AluJo SINE Alu 1 276 -36 21 57 0 0 chr9 104659478 104659513 -37611931 + AT_rich Low_complexity Low_complexity 1 35 0 8066 206 50 19 chr9 104659551 104661600 -37609844 - L1MA9 LINE L1 -1821 4325 2214 472 347 121 64 chr9 104662245 104663440 -37608004 - L3 LINE CR1 -71 1506 243 2449 110 16 11 chr9 104664309 104664682 -37606762 - THE1C LTR MaLR 0 375 1 6184 137 5 4 chr9 104664682 104665609 -37605835 - THE1C-int LTR MaLR 0 1580 653 667 150 9 18 chr9 104665609 104665722 -37605722 - THE1B LTR MaLR -252 112 1 741 304 20 20 chr9 104665794 104666041 -37605403 - MIR SINE MIR -1 261 15 399 278 223 13 chr9 104668627 104669012 -37602432 + L1M4 LINE L1 2915 3380 -2766 982 268 0 15 chr9 104669164 104669436 -37602008 + MER93b LTR ERV1 106 373 0 26 30 0 0 chr9 104669489 104669522 -37601922 + AT_rich Low_complexity Low_complexity 1 33 0 21 71 0 0 chr9 104669591 104669633 -37601811 + AT_rich Low_complexity Low_complexity 1 42 0 379 307 56 56 chr9 104669667 104670058 -37601386 + L1M4 LINE L1 3739 4129 -2017 363 331 68 0 chr9 104670241 104670492 -37600952 + L1M4 LINE L1 4258 4525 -1621 32 26 0 0 chr9 104670567 104670606 -37600838 + AT_rich Low_complexity Low_complexity 1 39 0 253 303 66 52 chr9 104670646 104671012 -37600432 + L1M4 LINE L1 5258 5628 -542 1433 197 0 53 chr9 104672136 104672435 -37599009 - AluJb SINE Alu -29 283 1 29 28 0 0 chr9 104672662 104672698 -37598746 + AT_rich Low_complexity Low_complexity 1 36 0 2829 147 12 14 chr9 104672771 104672943 -37598501 - L1MA6 LINE L1 0 7321 7150 1849 171 45 3 chr9 104672943 104673277 -37598167 - MER7A DNA MER2_type 0 346 1 2829 147 12 14 chr9 104673277 104673613 -37597831 - L1MA6 LINE L1 -171 7150 6814 192 163 0 0 chr9 104673613 104673656 -37597788 + T-rich Low_complexity Low_complexity 1 43 0 7259 47 17 0 chr9 104673659 104674810 -37596634 - L1PA5 LINE L1 -1 6153 4994 1786 43 17 0 chr9 104674810 104675041 -37596403 + L1P LINE L1 4285 4519 -1627 * 26631 48 57 1 chr9 104675040 104678508 -37592936 - L1PA5 LINE L1 -2482 3664 1 1644 140 7 33 chr9 104678506 104678813 -37592631 - L1MA6 LINE L1 -527 6794 6496 * 6186 199 24 5 chr9 104678784 104680113 -37591331 - L1MA6 LINE L1 -992 6175 4821 * 7982 202 89 85 chr9 104680110 104682400 -37589044 - L1MA6 LINE L1 -4823 2345 29 296 250 29 22 chr9 104683435 104683571 -37587873 + (TA)n Simple_repeat Simple_repeat 2 138 0 278 115 19 0 chr9 104684474 104684526 -37586918 + (TG)n Simple_repeat Simple_repeat 1 53 0 371 333 149 37 chr9 104684600 104685165 -37586279 + L2 LINE L2 499 1126 -2188 604 300 71 37 chr9 104685186 104685298 -37586146 + L2 LINE L2 1598 1705 -1609 2375 80 0 0 chr9 104685298 104685609 -37585835 + AluY SINE Alu 1 311 0 604 300 71 37 chr9 104685609 104685903 -37585541 + L2 LINE L2 1705 2018 -1296 558 319 13 68 chr9 104686361 104686668 -37584776 + L2 LINE L2 2031 2320 -994 562 276 61 25 chr9 104686813 104687009 -37584435 - MIR SINE MIR -56 206 4 213 269 0 0 chr9 104687586 104687664 -37583780 + CT-rich Low_complexity Low_complexity 2 79 0 4144 105 5 7 chr9 104687914 104688534 -37582910 - L1P LINE L1 -1045 5101 4483 29 60 0 0 chr9 104688870 104688920 -37582524 + AT_rich Low_complexity Low_complexity 1 50 0 211 316 43 43 chr9 104691041 104691158 -37580286 + MIR3 SINE MIR 84 200 -8 9312 228 31 24 chr9 104691288 104693888 -37577556 - L1MC3 LINE L1 -8 7777 5160 666 58 0 0 chr9 104693923 104694010 -37577434 - L1PA5 LINE L1 -6 6148 6062 624 246 18 0 chr9 104694010 104694286 -37577158 - L1MC3 LINE L1 -1201 4945 4572 261 0 0 0 chr9 104695268 104695297 -37576147 + (CA)n Simple_repeat Simple_repeat 2 30 0 489 309 96 39 chr9 104695992 104696222 -37575222 + MIR SINE MIR 14 256 -6 27 29 0 0 chr9 104696361 104696395 -37575049 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr9 104696431 104696463 -37574981 + AT_rich Low_complexity Low_complexity 1 32 0 326 113 0 16 chr9 104696856 104696918 -37574526 + (CA)n Simple_repeat Simple_repeat 2 62 0 500 252 24 8 chr9 104696984 104697111 -37574333 + MER94 DNA DNA 6 134 0 251 331 145 0 chr9 104697179 104697345 -37574099 + MIR SINE MIR 51 240 -22 326 90 60 0 chr9 104697913 104697980 -37573464 + L1MB3 LINE L1 6110 6180 -3 306 372 131 22 chr9 104698199 104698511 -37572933 - L3 LINE CR1 -6 1571 1226 246 384 45 0 chr9 104698582 104698694 -37572750 - L3 LINE CR1 -477 1100 984 221 313 89 0 chr9 104699391 104699503 -37571941 + MIR3 SINE MIR 85 206 -2 461 301 6 0 chr9 104699932 104700105 -37571339 - L1MC3 LINE L1 -2124 4022 3849 25 0 0 0 chr9 104700123 104700148 -37571296 + AT_rich Low_complexity Low_complexity 1 25 0 306 217 76 0 chr9 104700148 104700240 -37571204 - L1MA7 LINE L1 0 6291 6193 538 168 119 0 chr9 104700473 104700616 -37570828 - L1MC3 LINE L1 -10 7775 7616 1078 285 50 12 chr9 104701029 104701433 -37570011 + L1ME3A LINE L1 5410 5828 -342 699 129 9 0 chr9 104701595 104701711 -37569733 - L1M2 LINE L1 -800 5491 5375 * 3378 185 34 37 chr9 104701708 104702472 -37568972 + L1MA7 LINE L1 5529 6290 -1 2255 95 7 0 chr9 104702484 104702779 -37568665 + AluSg SINE Alu 1 297 -13 239 264 8 50 chr9 104702810 104702931 -37568513 - L1MC3 LINE L1 -3395 2751 2636 1478 162 70 3 chr9 104702931 104703215 -37568229 + L1PA15 LINE L1 5857 6159 -6 657 313 40 18 chr9 104703227 104703502 -37567942 + L1ME3A LINE L1 5862 6142 -28 2555 50 0 0 chr9 104704094 104704396 -37567048 + AluY SINE Alu 1 302 -9 297 134 104 30 chr9 104704686 104704753 -37566691 - MLT1H LTR MaLR -16 533 462 312 27 0 0 chr9 104705332 104705369 -37566075 + (TG)n Simple_repeat Simple_repeat 1 37 0 231 325 13 0 chr9 104707637 104707714 -37563730 - MLT1K LTR MaLR -497 91 14 1271 212 81 36 chr9 104708414 104708772 -37562672 + MLT1A2 LTR MaLR 1 374 0 1557 169 166 0 chr9 104708853 104709167 -37562277 - MER47A DNA MER2_type 0 366 1 582 335 64 0 chr9 104712096 104712314 -37559130 + MIR SINE MIR 31 262 0 21 36 0 0 chr9 104712397 104712425 -37559019 + AT_rich Low_complexity Low_complexity 1 28 0 208 321 114 21 chr9 104713183 104713323 -37558121 + L2 LINE L2 3161 3313 0 314 290 176 36 chr9 104713675 104713954 -37557490 - L1ME4a LINE L1 -139 5982 5665 464 273 57 54 chr9 104714468 104714786 -37556658 + L1MDb LINE L1 1056 1375 -5021 497 250 43 62 chr9 104715160 104715368 -37556076 + LTR33 LTR ERVL 298 501 -20 181 286 0 0 chr9 104715642 104715691 -37555753 + L2 LINE L2 3262 3310 -3 360 299 88 58 chr9 104716137 104716398 -37555046 - L1M4 LINE L1 -2253 3893 3625 608 309 70 9 chr9 104716581 104716811 -37554633 + L2 LINE L2 2432 2675 -639 253 182 0 148 chr9 104716931 104717019 -37554425 + MLT1I LTR MaLR 103 177 -232 28 48 0 0 chr9 104717815 104717857 -37553587 + AT_rich Low_complexity Low_complexity 1 42 0 341 155 99 0 chr9 104717885 104717956 -37553488 + L1MA4 LINE L1 6163 6240 -60 524 291 33 83 chr9 104718709 104719070 -37552374 + L1ME LINE L1 276 618 -5452 1625 189 25 38 chr9 104719815 104719906 -37551538 + MLT1B LTR MaLR 1 92 -298 1816 145 7 7 chr9 104719906 104720215 -37551229 - AluSx SINE Alu 0 309 1 1625 189 25 38 chr9 104720215 104720470 -37550974 + MLT1B LTR MaLR 92 339 -51 4720 116 18 7 chr9 104720470 104721154 -37550290 - LTR8 LTR ERV1 0 691 1 1625 189 25 38 chr9 104721154 104721206 -37550238 + MLT1B LTR MaLR 339 390 0 2053 132 6 28 chr9 104721300 104721619 -37549825 + AluSq SINE Alu 1 312 -1 42300 38 22 1 chr9 104721768 104727783 -37543661 - L1PA3 LINE L1 -1 6154 11 366 304 114 11 chr9 104727843 104728027 -37543417 + MIR SINE MIR 60 262 0 208 100 50 0 chr9 104728211 104728251 -37543193 + T-rich Low_complexity Low_complexity 1 42 0 270 263 94 81 chr9 104729336 104729496 -37541948 + L2 LINE L2 3151 3312 -1 344 316 96 57 chr9 104730534 104730952 -37540492 + L2 LINE L2 2852 3285 -28 188 132 0 79 chr9 104730927 104730965 -37540479 + MIR SINE MIR 216 250 -12 * 2180 125 7 0 chr9 104731369 104731672 -37539772 - AluSq SINE Alu -8 305 1 23 54 0 0 chr9 104731779 104731816 -37539628 + AT_rich Low_complexity Low_complexity 1 37 0 450 348 57 20 chr9 104732717 104732964 -37538480 + L2 LINE L2 2461 2716 -598 361 316 97 13 chr9 104733120 104733275 -37538169 - MIR SINE MIR -70 192 25 209 347 98 53 chr9 104735355 104735580 -37535864 + L2 LINE L2 2701 2935 -379 2187 187 80 7 chr9 104735888 104736349 -37535095 - LTR1B LTR ERV1 0 826 332 300 182 0 30 chr9 104736393 104736459 -37534985 - LTR1 LTR ERV1 -543 242 179 25 51 0 0 chr9 104736664 104736703 -37534741 + AT_rich Low_complexity Low_complexity 1 39 0 1610 154 51 20 chr9 104737800 104738093 -37533351 + AluSx SINE Alu 1 302 -10 353 278 129 31 chr9 104738701 104738895 -37532549 - L1M4 LINE L1 -2314 3832 3620 2111 252 93 24 chr9 104738971 104739040 -37532404 - L1ME1 LINE L1 -1 6165 6102 1380 192 38 34 chr9 104739040 104739331 -37532113 + AluJb SINE Alu 1 292 -20 2111 252 93 24 chr9 104739331 104740246 -37531198 - L1ME1 LINE L1 -64 6102 5112 1935 118 28 3 chr9 104740251 104740539 -37530905 - AluSp SINE Alu -3 310 16 1394 157 5 5 chr9 104740562 104740778 -37530666 - AluSx SINE Alu -96 216 1 22 35 0 0 chr9 104740778 104740807 -37530637 + AT_rich Low_complexity Low_complexity 1 29 0 592 297 81 61 chr9 104740848 104741292 -37530152 - L1MEc LINE L1 -5907 489 37 1389 192 7 42 chr9 104741379 104741687 -37529757 + MER101B LTR ERV1 8 304 -266 519 291 5 51 chr9 104741691 104741887 -37529557 + MER101 LTR ERV1 259 445 -29 253 278 14 0 chr9 104742383 104742455 -37528989 + LOR1-int LTR ERV1 842 914 -5417 742 250 21 38 chr9 104742455 104742691 -37528753 + LOR1-int LTR ERV1 1158 1389 -4942 501 218 30 61 chr9 104742806 104742971 -37528473 + LOR1-int LTR ERV1 1372 1531 -4800 2044 118 21 0 chr9 104742998 104743277 -37528167 + AluSg SINE Alu 1 285 -25 312 158 0 0 chr9 104743277 104743334 -37528110 + (TA)n Simple_repeat Simple_repeat 1 57 0 216 216 0 0 chr9 104743357 104743408 -37528036 + (TA)n Simple_repeat Simple_repeat 2 52 0 236 284 0 11 chr9 104743408 104743496 -37527948 + L1MC4 LINE L1 6614 6700 -1342 236 284 23 0 chr9 104743498 104743586 -37527858 + L1MC4 LINE L1 6614 6703 -1339 521 252 57 13 chr9 104743672 104743831 -37527613 + LOR1-int LTR ERV1 838 1003 -4120 332 282 264 6 chr9 104743836 104744010 -37527434 + MER34C LTR ERV1 172 390 -195 955 177 26 113 chr9 104744010 104744561 -37526883 + LOR1-int LTR ERV1 1191 3269 -2863 289 234 31 0 chr9 104744623 104744687 -37526757 + LOR1-int LTR ERV1 3275 3340 -2991 528 211 0 0 chr9 104744736 104744831 -37526613 + LOR1-int LTR ERV1 3353 3447 -2884 1896 215 42 48 chr9 104744969 104745764 -37525680 + LOR1-int LTR ERV1 1721 2573 -2550 251 250 45 34 chr9 104745751 104745839 -37525605 + LOR1-int LTR ERV1 2469 2557 -2379 * 1583 207 66 31 chr9 104745842 104746114 -37525330 + LOR1-int LTR ERV1 3077 3042 -1894 1984 115 0 4 chr9 104746114 104746393 -37525051 - AluSc SINE Alu -31 278 1 1583 207 66 31 chr9 104746393 104746597 -37524847 + LOR1-int LTR ERV1 3041 3236 -1700 510 313 0 0 chr9 104746819 104746953 -37524491 + LOR1-int LTR ERV1 6963 7096 -1024 1290 222 128 49 chr9 104746964 104747433 -37524011 + MER101B LTR ERV1 14 519 -51 232 208 50 79 chr9 104747351 104747452 -37523992 - LTR40a LTR ERVL -353 166 69 * 381 294 68 68 chr9 104747549 104747903 -37523541 - L1M4 LINE L1 -2760 3386 3033 1861 154 43 56 chr9 104750398 104750793 -37520651 - MLT1B LTR MaLR 0 390 1 337 351 12 24 chr9 104750920 104751085 -37520359 + MLT1K LTR MaLR 129 291 -297 300 247 59 0 chr9 104751334 104751419 -37520025 - MLT1J2 LTR MaLR -288 162 73 29 28 0 0 chr9 104751675 104751711 -37519733 + AT_rich Low_complexity Low_complexity 1 36 0 26 82 0 0 chr9 104751769 104751830 -37519614 + AT_rich Low_complexity Low_complexity 1 61 0 2321 72 0 10 chr9 104752378 104752682 -37518762 + AluY SINE Alu 1 301 -10 2257 87 7 7 chr9 104752710 104753019 -37518425 + AluSc SINE Alu 1 309 0 1767 206 54 64 chr9 104753254 104753755 -37517689 + MER68 LTR ERV1 1 496 -66 21 36 0 0 chr9 104753972 104754000 -37517444 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr9 104755103 104755131 -37516313 + AT_rich Low_complexity Low_complexity 1 28 0 310 272 63 25 chr9 104755301 104755459 -37515985 - HAL1 LINE L1 -109 2398 2235 203 229 21 0 chr9 104755993 104756041 -37515403 + (TA)n Simple_repeat Simple_repeat 1 49 0 189 94 0 0 chr9 104756176 104756208 -37515236 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 817 171 78 21 chr9 104756768 104756961 -37514483 - L1MB4 LINE L1 -15 6165 5962 437 191 11 34 chr9 104756972 104757061 -37514383 + MER20 DNA MER1_type 20 106 -113 227 212 45 0 chr9 104759085 104759151 -37512293 + MLT1F LTR MaLR 474 542 0 2826 99 0 0 chr9 104759358 104759733 -37511711 + THE1C LTR MaLR 1 375 0 1557 188 33 49 chr9 104759977 104760366 -37511078 - L1MA9 LINE L1 -153 6159 5777 765 105 0 0 chr9 104760386 104760491 -37510953 + U6 snRNA snRNA 1 105 -2 24 32 0 0 chr9 104760492 104760523 -37510921 + AT_rich Low_complexity Low_complexity 1 31 0 1197 159 9 23 chr9 104760523 104760743 -37510701 - L1MA9 LINE L1 -542 5792 5576 28 0 0 0 chr9 104760744 104760772 -37510672 + AT_rich Low_complexity Low_complexity 1 28 0 452 218 42 49 chr9 104760808 104760950 -37510494 - MER50 LTR ERV1 -581 153 13 4591 98 44 7 chr9 104760955 104761637 -37509807 - L1PB1 LINE L1 -42 6109 5403 3236 181 28 31 chr9 104761637 104761866 -37509578 - L1MA9 LINE L1 -731 5581 5353 1880 163 13 10 chr9 104761866 104762167 -37509277 - AluSx SINE Alu -10 302 1 3236 181 28 31 chr9 104762167 104762896 -37508548 - L1MA9 LINE L1 -959 5353 4620 8427 116 27 19 chr9 104762896 104764193 -37507251 + MER57A-int LTR ERV1 5839 7146 -391 785 100 23 31 chr9 104764193 104764323 -37507121 + LTR54B LTR ERV1 3 131 -367 1598 134 0 41 chr9 104764324 104764593 -37506851 + MER57A-int LTR ERV1 7280 7537 0 1985 161 49 3 chr9 104764593 104764978 -37506466 + MER57A LTR ERV1 1 403 0 23 0 0 0 chr9 104764998 104765021 -37506423 + AT_rich Low_complexity Low_complexity 1 23 0 1091 101 169 0 chr9 104765733 104765922 -37505522 - L1PA13 LINE L1 0 6163 5943 499 270 163 17 chr9 104767215 104767393 -37504051 - MIR SINE MIR -30 232 29 2012 147 3 0 chr9 104767432 104767732 -37503712 + AluSx SINE Alu 1 301 -11 218 269 0 15 chr9 104767735 104767802 -37503642 + GA-rich Low_complexity Low_complexity 2 67 0 25 65 0 0 chr9 104769690 104769736 -37501708 + AT_rich Low_complexity Low_complexity 1 46 0 595 71 20 0 chr9 104770021 104770119 -37501325 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 12947 173 42 11 chr9 104770275 104774110 -37497334 - L1MA3 LINE L1 0 7724 3764 6859 131 23 3 chr9 104774094 104775219 -37496225 - L1MA3 LINE L1 -4470 3095 1948 * 3324 198 9 1 chr9 104775219 104775876 -37495568 - L1PA16 LINE L1 -11 6155 5494 1695 182 0 0 chr9 104775876 104776167 -37495277 - L1P4 LINE L1 -393 5773 5483 319 367 15 40 chr9 104776787 104776986 -37494458 + L2 LINE L2 2550 2743 -571 49 66 0 0 chr9 104780439 104780530 -37490914 + AT_rich Low_complexity Low_complexity 1 91 0 314 305 17 17 chr9 104780582 104780700 -37490744 + L1ME LINE L1 5546 5663 -458 317 291 51 23 chr9 104780934 104781109 -37490335 + L1MEc LINE L1 1939 2118 -4278 21 57 0 0 chr9 104781471 104781506 -37489938 + AT_rich Low_complexity Low_complexity 1 35 0 2537 40 0 0 chr9 104781813 104782111 -37489333 - AluY SINE Alu -13 298 1 28 29 0 0 chr9 104782937 104782972 -37488472 + AT_rich Low_complexity Low_complexity 1 35 0 1787 221 112 10 chr9 104784255 104784747 -37486697 + MER34 LTR ERV1 1 542 0 202 182 0 0 chr9 104786125 104786158 -37485286 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr9 104786573 104786595 -37484849 + AT_rich Low_complexity Low_complexity 1 22 0 30 45 0 0 chr9 104786928 104786972 -37484472 + AT_rich Low_complexity Low_complexity 1 44 0 2065 89 0 7 chr9 104788461 104788752 -37482692 + L1PB1 LINE L1 5863 6151 0 365 316 95 22 chr9 104788941 104789172 -37482272 + L2 LINE L2 1698 1945 -1369 26 0 0 0 chr9 104789309 104789335 -37482109 + AT_rich Low_complexity Low_complexity 1 26 0 969 291 157 16 chr9 104789590 104789765 -37481679 - L1ME1 LINE L1 -4 6096 5947 1814 134 56 3 chr9 104789765 104790049 -37481395 - AluSx SINE Alu -13 299 1 969 291 157 16 chr9 104790049 104790548 -37480896 - L1ME1 LINE L1 -153 5947 5322 807 265 77 14 chr9 104790671 104790958 -37480486 - L1MCa LINE L1 -6103 323 19 1093 244 53 75 chr9 104790974 104791524 -37479920 - L1ME1 LINE L1 -1778 4302 3765 811 266 66 23 chr9 104791505 104791854 -37479590 - L1ME1 LINE L1 -3256 2824 2461 * 946 269 118 23 chr9 104791865 104792447 -37478997 - L1ME1 LINE L1 -3654 2426 1823 1890 141 3 3 chr9 104792523 104792813 -37478631 - AluSx SINE Alu -13 299 10 326 259 31 84 chr9 104792886 104792929 -37478515 - L1ME1 LINE L1 -4558 1522 1478 1141 212 8 8 chr9 104792929 104793165 -37478279 - MER46A DNA MER2_type 0 236 1 326 259 31 84 chr9 104793165 104793315 -37478129 - L1ME1 LINE L1 -4602 1478 1193 247 283 80 22 chr9 104793507 104793645 -37477799 - L1ME1 LINE L1 -5066 1004 859 347 315 105 12 chr9 104793651 104793908 -37477536 - L1ME1 LINE L1 -5241 829 549 252 250 21 10 chr9 104794364 104794460 -37476984 + L1M4 LINE L1 1404 1500 -5246 2397 94 0 0 chr9 104794499 104794807 -37476637 - AluSg SINE Alu -2 308 1 21 57 0 0 chr9 104795035 104795070 -37476374 + AT_rich Low_complexity Low_complexity 1 35 0 22 80 0 0 chr9 104796866 104796916 -37474528 + AT_rich Low_complexity Low_complexity 1 50 0 2363 208 28 41 chr9 104798218 104798757 -37472687 + MLT2B3 LTR ERVL 3 534 -20 534 91 0 0 chr9 104798759 104798836 -37472608 + (CCTA)n Simple_repeat Simple_repeat 3 79 0 303 104 21 0 chr9 104798874 104798922 -37472522 + MLT2B3 LTR ERVL 506 554 0 580 78 0 0 chr9 104799160 104799237 -37472207 - MADE1 DNA Mariner 0 80 4 29 0 0 0 chr9 104799401 104799430 -37472014 + AT_rich Low_complexity Low_complexity 1 29 0 724 290 112 21 chr9 104799561 104799847 -37471597 - MLT1H LTR MaLR -122 427 116 1151 274 52 3 chr9 104799849 104800211 -37471233 + L1M4 LINE L1 2309 2688 -4161 332 338 106 30 chr9 104801004 104801306 -37470138 + L3b LINE CR1 1129 1453 -130 725 146 0 0 chr9 104801792 104801902 -37469542 + AluSp/q SINE Alu 182 291 -22 21 0 0 0 chr9 104802875 104802896 -37468548 + AT_rich Low_complexity Low_complexity 1 21 0 1078 106 6 0 chr9 104802898 104803058 -37468386 - L1MA1 LINE L1 0 6302 6142 737 112 0 0 chr9 104803058 104803165 -37468279 - L1MA2 LINE L1 -286 6018 5912 1175 169 51 4 chr9 104803165 104803402 -37468042 - L1MA6 LINE L1 -13 6287 6040 1049 264 23 93 chr9 104803408 104804053 -37467391 + L1MC4 LINE L1 7170 7769 -273 207 280 0 0 chr9 104804158 104804208 -37467236 + (CATA)n Simple_repeat Simple_repeat 1 50 0 270 0 0 0 chr9 104804219 104804249 -37467195 + (TG)n Simple_repeat Simple_repeat 1 30 0 228 305 45 23 chr9 104804371 104804548 -37466896 + L1ME4a LINE L1 5927 6107 -14 207 293 27 13 chr9 104805117 104805192 -37466252 + L2 LINE L2 1626 1701 -1613 216 0 0 0 chr9 104805490 104805514 -37465930 + (TATG)n Simple_repeat Simple_repeat 2 25 0 1554 181 11 14 chr9 104805516 104805798 -37465646 - AluJb SINE Alu -31 281 1 839 207 32 5 chr9 104806467 104806684 -37464760 + L1MD3 LINE L1 7773 7995 0 4546 185 50 7 chr9 104806704 104807386 -37464058 - L1PA16 LINE L1 -9 7595 6944 1952 159 27 19 chr9 104807386 104807758 -37463686 - THE1C LTR MaLR 0 375 1 4546 185 50 7 chr9 104807758 104808620 -37462824 - L1PA16 LINE L1 -660 6944 5987 9423 260 23 12 chr9 104809518 104813206 -37458238 - L1PA16 LINE L1 -1578 6006 2259 821 391 3 11 chr9 104813832 104814203 -37457241 - L1PA16 LINE L1 -6418 1156 789 264 327 148 0 chr9 104814793 104814955 -37456489 - MIR SINE MIR -75 187 2 1830 144 102 9 chr9 104816320 104816653 -37454791 + THE1B LTR MaLR 1 364 0 9495 129 50 12 chr9 104816653 104817102 -37454342 + THE1B-int LTR MaLR 1 432 -1148 2839 6 0 0 chr9 104817102 104817413 -37454031 + AluYa5 SINE Alu 1 311 0 9495 129 50 12 chr9 104817413 104818486 -37452958 + THE1B-int LTR MaLR 432 1580 0 2089 164 17 6 chr9 104818486 104818846 -37452598 + THE1B LTR MaLR 1 364 0 2128 123 10 3 chr9 104819298 104819606 -37451838 - AluSg SINE Alu 0 310 1 420 82 0 0 chr9 104819707 104819768 -37451676 + (CA)n Simple_repeat Simple_repeat 2 62 0 360 305 83 31 chr9 104819815 104820166 -37451278 + L1ME LINE L1 5326 5694 -427 1649 286 100 25 chr9 104820311 104821059 -37450385 + L1MC3 LINE L1 5 808 -5237 15308 30 3 0 chr9 104821074 104824386 -37447058 + L1PA3 LINE L1 2834 6152 -3 2466 249 98 26 chr9 104824402 104825037 -37446407 + L1MC3 LINE L1 835 1423 -5141 1901 149 7 17 chr9 104825037 104825339 -37446105 + AluSx SINE Alu 1 299 -13 2466 249 98 26 chr9 104825339 104826398 -37445046 + L1MC3 LINE L1 1423 2405 -4159 243 0 0 0 chr9 104826398 104826425 -37445019 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2466 249 98 26 chr9 104826425 104827104 -37444340 + L1MC3 LINE L1 2405 3508 -3056 579 260 39 0 chr9 104827169 104827323 -37444121 + L1MC3 LINE L1 3940 4099 -2465 1243 239 100 59 chr9 104827917 104828377 -37443067 + MLT1D LTR MaLR 27 505 0 1665 279 35 19 chr9 104828382 104828471 -37442973 + L1MC3 LINE L1 4114 4200 -2364 2043 149 24 24 chr9 104828471 104828846 -37442598 + THE1C LTR MaLR 1 375 0 9062 137 34 37 chr9 104828847 104830431 -37441013 + THE1C-int LTR MaLR 2 1580 0 2098 137 44 14 chr9 104830431 104830795 -37440649 + THE1C LTR MaLR 1 375 0 1665 279 35 19 chr9 104830795 104831298 -37440146 + L1MC3 LINE L1 4199 4719 -1845 619 199 6 40 chr9 104831322 104831498 -37439946 - L1 LINE L1 -812 5334 5165 346 136 15 0 chr9 104831495 104831561 -37439883 + L1P LINE L1 5099 5165 -981 * 1323 222 4 0 chr9 104831559 104831829 -37439615 - L1P LINE L1 -2077 4069 3799 * 4797 138 21 3 chr9 104831823 104832593 -37438851 + L1PA15 LINE L1 5371 6154 -11 1409 174 0 55 chr9 104832593 104832910 -37438534 + AluJb SINE Alu 23 324 0 1673 260 62 44 chr9 104832924 104833787 -37437657 + L1MC3 LINE L1 4826 5728 -1183 2281 78 24 0 chr9 104833787 104834080 -37437364 + AluY SINE Alu 1 300 -11 1673 260 62 44 chr9 104834080 104834496 -37436948 + L1MC3 LINE L1 5728 6135 -776 1341 216 64 25 chr9 104834502 104834957 -37436487 + L1MC3 LINE L1 6330 6707 -1496 4503 160 24 6 chr9 104834958 104835741 -37435703 - Tigger1 DNA MER2_type -1 2417 1621 2232 150 13 8 chr9 104835778 104836151 -37435293 - L1PA16 LINE L1 -106 6060 5686 * 2981 238 47 1 chr9 104836134 104836908 -37434536 + L1 LINE L1 3713 4521 -1625 1797 143 65 0 chr9 104836908 104837216 -37434228 - Tigger1 DNA MER2_type -775 1643 1316 * 2259 164 40 2 chr9 104837215 104837612 -37433832 - Tigger1 DNA MER2_type -1997 421 10 2942 209 89 15 chr9 104837612 104838343 -37433101 + L1MC3 LINE L1 6984 7768 -17 46 0 0 0 chr9 104838347 104838393 -37433051 + AT_rich Low_complexity Low_complexity 1 46 0 255 174 0 0 chr9 104838524 104838570 -37432874 + L1ME4a LINE L1 5990 6035 -86 207 219 0 0 chr9 104838989 104839030 -37432414 + (CATA)n Simple_repeat Simple_repeat 3 43 0 23 33 0 0 chr9 104839425 104839455 -37431989 + AT_rich Low_complexity Low_complexity 1 30 0 505 291 132 0 chr9 104839715 104839897 -37431547 - MIR SINE MIR -12 250 45 1992 193 89 27 chr9 104839899 104840382 -37431062 - L1MA10 LINE L1 -2 6332 5820 2668 187 45 26 chr9 104840383 104840986 -37430458 - L1MC1 LINE L1 -15 6318 5705 * 41253 60 5 4 chr9 104840985 104847137 -37424307 + L1PA5 LINE L1 3 6154 0 1868 211 37 14 chr9 104847141 104847803 -37423641 - L1MC1 LINE L1 -619 5714 5040 1436 210 118 3 chr9 104847804 104848151 -37423293 - MLT2C2 LTR ERVL -73 391 5 1162 196 122 37 chr9 104849250 104849577 -37421867 + L1MB2 LINE L1 5817 6171 0 2428 68 7 0 chr9 104850211 104850520 -37420924 + AluY SINE Alu 1 311 0 2442 59 0 7 chr9 104850683 104850990 -37420454 - AluY SINE Alu -6 305 1 343 307 136 23 chr9 104851406 104851582 -37419862 - L2 LINE L2 0 3313 3118 2531 62 0 0 chr9 104851799 104852105 -37419339 - AluY SINE Alu -5 306 1 315 299 0 0 chr9 104852395 104852492 -37418952 + MER110A LTR ERV1 74 170 -298 6761 63 7 1 chr9 104853286 104854357 -37417087 + L1PA7 LINE L1 5077 6152 -2 312 27 0 0 chr9 104855355 104855392 -37416052 + (CA)n Simple_repeat Simple_repeat 1 37 0 199 294 0 0 chr9 104856441 104856492 -37414952 + L2 LINE L2 3216 3266 -6 226 263 93 59 chr9 104858342 104858460 -37412984 - L2 LINE L2 0 3313 3192 32 0 0 0 chr9 104858834 104858866 -37412578 + AT_rich Low_complexity Low_complexity 1 32 0 4216 186 60 32 chr9 104859401 104860442 -37411002 + MER11C LTR ERVK 1 1071 0 446 329 107 17 chr9 104861205 104861439 -37410005 - MIR SINE MIR 0 262 8 29 0 0 0 chr9 104861440 104861469 -37409975 + AT_rich Low_complexity Low_complexity 1 29 0 1970 116 18 0 chr9 104862414 104862699 -37408745 - AluSx SINE Alu -22 290 1 1964 108 3 48 chr9 104862830 104863144 -37408300 + AluSx SINE Alu 5 304 -8 211 317 17 0 chr9 104863461 104863521 -37407923 - MIR SINE MIR -129 79 19 21 0 0 0 chr9 104863993 104864014 -37407430 + AT_rich Low_complexity Low_complexity 1 21 0 219 108 40 40 chr9 104865121 104865195 -37406249 + (TA)n Simple_repeat Simple_repeat 2 75 0 40 21 0 0 chr9 104865887 104865934 -37405510 + AT_rich Low_complexity Low_complexity 1 47 0 947 275 68 29 chr9 104866306 104866760 -37404684 + L1MCc LINE L1 16 487 -5936 479 192 44 118 chr9 104866845 104867048 -37404396 + L1ME1 LINE L1 5971 6158 -8 219 242 0 0 chr9 104867092 104867154 -37404290 + GA-rich Low_complexity Low_complexity 3 64 0 263 328 39 8 chr9 104867198 104867326 -37404118 + MIR SINE MIR 89 220 -42 279 103 69 17 chr9 104867492 104867608 -37403836 + (TTATA)n Simple_repeat Simple_repeat 3 124 0 * 490 75 93 12 chr9 104867587 104867748 -37403696 + (TATAG)n Simple_repeat Simple_repeat 2 175 0 297 185 56 9 chr9 104867748 104867856 -37403588 + (TTATA)n Simple_repeat Simple_repeat 5 117 0 330 131 71 0 chr9 104867856 104868024 -37403420 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 458 83 50 16 chr9 104867983 104868104 -37403340 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 213 39 0 0 chr9 104868104 104868130 -37403314 + (CA)n Simple_repeat Simple_repeat 2 27 0 217 325 103 0 chr9 104868474 104868600 -37402844 + L2 LINE L2 3131 3269 -44 603 272 151 13 chr9 104868729 104869273 -37402171 - LTR50 LTR ERVL -4 791 73 1662 81 5 0 chr9 104869291 104869514 -37401930 - L1PA8 LINE L1 -3 6169 5946 2208 54 7 0 chr9 104869514 104869791 -37401653 + L1P3 LINE L1 5540 5818 -354 317 277 24 0 chr9 104869791 104869874 -37401570 - LTR50 LTR ERVL -708 87 3 24 32 0 0 chr9 104870800 104870831 -37400613 + AT_rich Low_complexity Low_complexity 1 31 0 197 81 0 27 chr9 104870962 104870999 -37400445 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 22 70 0 0 chr9 104871133 104871176 -37400268 + AT_rich Low_complexity Low_complexity 1 43 0 198 143 0 0 chr9 104871574 104871609 -37399835 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 327 25 0 0 chr9 104871629 104871669 -37399775 + (CA)n Simple_repeat Simple_repeat 1 40 0 2960 132 8 6 chr9 104871715 104872186 -37399258 + MER9 LTR ERVK 40 511 0 215 234 170 21 chr9 104872491 104872585 -37398859 - MER5B DNA MER1_type -34 144 37 1388 234 35 105 chr9 104872585 104872783 -37398661 + L1MDa LINE L1 18 228 -6312 211 91 23 23 chr9 104872783 104872827 -37398617 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 1388 234 35 105 chr9 104872827 104873118 -37398326 + L1MDa LINE L1 228 478 -6062 3919 166 29 32 chr9 104873118 104873949 -37397495 + L1MA7 LINE L1 5464 6291 0 1388 234 35 105 chr9 104873949 104874113 -37397331 + L1MDa LINE L1 478 652 -5888 2163 258 68 11 chr9 104874133 104874975 -37396469 + L1MDa LINE L1 2722 3611 -2929 5540 195 44 11 chr9 104875010 104876182 -37395262 - L1M1 LINE L1 -6337 1228 18 212 338 122 0 chr9 104876225 104876299 -37395145 - MIR SINE MIR -179 83 1 189 0 0 0 chr9 104876513 104876534 -37394910 + (A)n Simple_repeat Simple_repeat 1 21 0 364 283 9 0 chr9 104876545 104876658 -37394786 - LTR16B LTR ERVL -89 375 262 323 273 116 79 chr9 104877298 104877565 -37393879 - L1ME4a LINE L1 -249 5872 5596 264 178 40 99 chr9 104878168 104878269 -37393175 - L1MA9 LINE L1 -38 6274 6180 21 71 0 0 chr9 104878501 104878543 -37392901 + AT_rich Low_complexity Low_complexity 1 42 0 2932 158 19 9 chr9 104878760 104879323 -37392121 + L1MA8 LINE L1 5718 6286 -5 21 0 0 0 chr9 104879526 104879547 -37391897 + AT_rich Low_complexity Low_complexity 1 21 0 201 138 0 0 chr9 104879688 104879717 -37391727 + (TC)n Simple_repeat Simple_repeat 1 29 0 270 326 11 21 chr9 104880059 104880154 -37391290 - LTR16C LTR ERVL -95 396 303 182 331 121 16 chr9 104880575 104880699 -37390745 + MIR SINE MIR 20 156 -106 2316 128 22 6 chr9 104880717 104881075 -37390369 - THE1B LTR MaLR 0 364 1 32 43 0 0 chr9 104882220 104882266 -37389178 + AT_rich Low_complexity Low_complexity 1 46 0 7491 96 9 3 chr9 104882901 104884777 -37386667 - L1PA7 LINE L1 0 6154 4271 2014 251 10 18 chr9 104885662 104886161 -37385283 - LTR42 LTR ERVL 0 495 1 3822 24 0 4 chr9 104886754 104887207 -37384237 - L1PA4 LINE L1 -3 6152 5702 491 99 0 0 chr9 104887207 104887278 -37384166 + L1P LINE L1 1601 1671 -4475 1182 214 74 8 chr9 104887497 104887754 -37383690 - MLT1A1 LTR MaLR -8 357 84 4567 28 0 0 chr9 104889041 104889652 -37381792 + L1PA3 LINE L1 5615 6225 0 373 167 0 0 chr9 104889814 104889892 -37381552 - L1MA7 LINE L1 -8 6283 6206 30 27 0 0 chr9 104890094 104890131 -37381313 + AT_rich Low_complexity Low_complexity 1 37 0 882 255 40 22 chr9 104891263 104891581 -37379863 + MER58B DNA MER1_type 1 341 0 304 127 0 0 chr9 104892090 104892145 -37379299 + L1MA7 LINE L1 6237 6291 0 900 238 11 23 chr9 104892400 104892665 -37378779 + L1MA9 LINE L1 6013 6274 -38 1899 145 7 0 chr9 104892693 104893013 -37378431 + AluSx SINE Alu 1 322 0 22 70 0 0 chr9 104893073 104893116 -37378328 + AT_rich Low_complexity Low_complexity 1 43 0 1800 182 10 31 chr9 104893185 104893575 -37377869 + MLT1B LTR MaLR 5 386 -4 32 43 0 0 chr9 104893988 104894034 -37377410 + AT_rich Low_complexity Low_complexity 1 46 0 1356 269 104 20 chr9 104894160 104894610 -37376834 - LTR40a LTR ERVL 0 519 32 974 241 4 55 chr9 104894610 104894867 -37376577 - HERVL68 LTR ERVL -3 5527 5284 263 278 0 0 chr9 104895074 104895128 -37376316 - HERVL68 LTR ERVL -260 2777 2724 4644 203 22 2 chr9 104895192 104895252 -37376192 - L1 LINE L1 -1679 4467 4410 324 0 0 0 chr9 104895252 104895288 -37376156 + (TTA)n Simple_repeat Simple_repeat 2 37 0 4644 203 22 2 chr9 104895288 104896223 -37375221 - L1 LINE L1 -1736 4410 3452 3232 132 16 8 chr9 104896190 104896352 -37375092 + L1PB1 LINE L1 5627 5786 -365 * 234 0 0 0 chr9 104896352 104896378 -37375066 + (TA)n Simple_repeat Simple_repeat 1 26 0 3232 132 16 8 chr9 104896378 104896732 -37374712 + L1PB1 LINE L1 5786 6147 -4 397 286 79 31 chr9 104896967 104897194 -37374250 - HERVL68 LTR ERVL -326 2711 2474 2201 310 58 12 chr9 104897472 104897926 -37373518 - HERVL40 LTR ERVL -870 4660 4149 2240 66 0 7 chr9 104897926 104898213 -37373231 + L1PA5 LINE L1 5867 6151 -3 2201 310 58 12 chr9 104898213 104898584 -37372860 - HERVL40 LTR ERVL -1381 4149 3797 1325 219 77 35 chr9 104898677 104899145 -37372299 - MER67C LTR ERV1 -4 510 62 4278 281 48 50 chr9 104899264 104900898 -37370546 - HERVL40 LTR ERVL -1849 3681 2050 1072 296 72 17 chr9 104900897 104901259 -37370185 - HERVL40 LTR ERVL -3913 1617 1236 * 3472 121 0 2 chr9 104901310 104901814 -37369630 + MER75 DNA T2_type 1 503 -11 520 272 22 0 chr9 104901948 104902084 -37369360 - HERVL40 LTR ERVL -4457 1073 935 668 188 0 0 chr9 104902401 104902513 -37368931 - LTR40a LTR ERVL 0 519 408 633 295 12 6 chr9 104902515 104902686 -37368758 - LTR40b LTR ERVL -189 273 102 6965 187 8 19 chr9 104902686 104904009 -37367435 - Tigger2 DNA MER2_type 0 2718 1410 213 139 0 0 chr9 104904009 104904052 -37367392 + (T)n Simple_repeat Simple_repeat 1 43 0 1096 0 0 30 chr9 104904052 104904185 -37367259 - L1HS LINE L1 0 6155 6027 6218 156 36 104 chr9 104904185 104904682 -37366762 - Tigger2 DNA MER2_type -1302 1416 886 456 176 0 33 chr9 104904682 104904773 -37366671 - FRAM SINE Alu -14 162 75 6218 156 36 104 chr9 104904773 104904820 -37366624 - Tigger2 DNA MER2_type -1832 886 837 666 236 0 0 chr9 104904820 104904943 -37366501 - FLAM_C SINE Alu -10 123 1 6218 156 36 104 chr9 104904943 104905791 -37365653 - Tigger2 DNA MER2_type -1881 837 35 460 236 9 9 chr9 104905795 104905901 -37365543 - LTR40a LTR ERVL -413 106 1 13290 121 47 13 chr9 104907488 104908733 -37362711 + Charlie3 DNA MER1_type 1 1345 -1361 2007 128 7 0 chr9 104908733 104909044 -37362400 + AluSx SINE Alu 1 313 0 13290 121 47 13 chr9 104909044 104909850 -37361594 + Charlie3 DNA MER1_type 1345 2122 -584 2938 56 6 145 chr9 104909850 104910095 -37361349 + MLT2A1 LTR ERVL 1 138 -306 7402 38 0 0 chr9 104910095 104911498 -37359946 + L1PA4 LINE L1 4751 6153 -2 2938 56 6 145 chr9 104911498 104911768 -37359676 + MLT2A1 LTR ERVL 138 444 0 * 3799 130 17 9 chr9 104911768 104912351 -37359093 + Charlie3 DNA MER1_type 2118 2705 -5 1099 174 124 0 chr9 104912352 104912570 -37358874 - LTR47A LTR ERVL -205 247 3 6239 171 46 58 chr9 104912585 104913241 -37358203 - MER4B-int LTR ERV1 -258 5691 5028 195 42 0 0 chr9 104913241 104913265 -37358179 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1812 143 30 0 chr9 104913265 104913531 -37357913 - AluSg SINE Alu -36 274 1 6239 171 46 58 chr9 104913531 104915193 -37356251 - MER4B-int LTR ERV1 -919 5030 4165 575 164 18 26 chr9 104915189 104915341 -37356103 - MER4B-int LTR ERV1 -2774 3557 2816 * 1360 243 76 113 chr9 104915501 104916537 -37354907 - MER4B-int LTR ERV1 -2999 2947 1950 994 171 18 0 chr9 104916874 104917038 -37354406 - LTR47A LTR ERVL -9 443 277 2796 122 63 5 chr9 104917104 104917365 -37354079 - MLT2A2 LTR ERVL 0 453 209 333 0 0 0 chr9 104917365 104917402 -37354042 + (TTA)n Simple_repeat Simple_repeat 3 39 0 3432 41 0 2 chr9 104917402 104917820 -37353624 - L1PA3 LINE L1 -18 6137 5721 2796 122 63 5 chr9 104917820 104917985 -37353459 - MLT2A2 LTR ERVL -243 210 1 215 360 79 0 chr9 104918344 104918458 -37352986 - L2 LINE L2 0 3272 3150 219 349 12 0 chr9 104918716 104918799 -37352645 - MIR SINE MIR -8 254 171 790 268 69 8 chr9 104918815 104918932 -37352512 - MIR SINE MIR 0 262 154 1421 202 29 71 chr9 104918932 104919000 -37352444 - MLT1A1 LTR MaLR 0 365 296 2136 124 0 3 chr9 104919000 104919306 -37352138 + AluY SINE Alu 1 305 -6 1421 202 29 71 chr9 104919306 104919618 -37351826 - MLT1A1 LTR MaLR -69 296 1 790 268 69 8 chr9 104919618 104919746 -37351698 - MIR SINE MIR -108 154 2 319 282 161 16 chr9 104919752 104919876 -37351568 - MIR SINE MIR -98 164 23 2217 140 31 17 chr9 104920055 104920412 -37351032 + THE1B LTR MaLR 1 362 -2 11053 100 21 1 chr9 104920414 104921963 -37349481 + THE1B-int LTR MaLR 1 1580 0 2207 147 28 19 chr9 104921963 104922324 -37349120 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr9 104922375 104922396 -37349048 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 104922422 104922444 -37349000 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr9 104922521 104922566 -37348878 + AT_rich Low_complexity Low_complexity 1 45 0 280 282 60 43 chr9 104923150 104923267 -37348177 + MIR SINE MIR 23 141 -121 398 224 66 77 chr9 104923696 104923802 -37347642 - MLT1L LTR MaLR -340 275 170 2880 13 0 0 chr9 104923802 104924112 -37347332 + AluY SINE Alu 1 310 -1 398 224 66 77 chr9 104924112 104924201 -37347243 - MLT1L LTR MaLR -445 170 82 525 221 0 18 chr9 104924226 104924339 -37347105 + FLAM_C SINE Alu 24 134 -9 1979 258 85 44 chr9 104924542 104925261 -37346183 + L1MD1 LINE L1 38 870 -5670 2514 247 35 34 chr9 104925318 104926355 -37345089 + L1MD1 LINE L1 5337 6385 -251 202 132 26 0 chr9 104926876 104926914 -37344530 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 306 50 0 0 chr9 104927018 104927058 -37344386 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr9 104927993 104928029 -37343415 + AT_rich Low_complexity Low_complexity 1 36 0 223 238 0 16 chr9 104928401 104928464 -37342980 + CT-rich Low_complexity Low_complexity 1 62 0 1149 257 97 11 chr9 104928467 104928829 -37342615 + MLT1F1 LTR MaLR 175 567 0 22 35 0 0 chr9 104929123 104929152 -37342292 + AT_rich Low_complexity Low_complexity 1 29 0 334 253 86 56 chr9 104929337 104929499 -37341945 - MIR SINE MIR -33 229 63 28 29 0 0 chr9 104929574 104929609 -37341835 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr9 104931314 104931338 -37340106 + AT_rich Low_complexity Low_complexity 1 24 0 2219 124 0 0 chr9 104932015 104932313 -37339131 - AluSx SINE Alu -13 299 2 603 219 44 22 chr9 104933374 104933557 -37337887 - MER53 DNA DNA -2 187 1 322 268 0 0 chr9 104933685 104933756 -37337688 - MLT1I LTR MaLR -258 151 81 959 188 5 48 chr9 104933765 104934009 -37337435 + AluJb SINE Alu 85 319 0 1303 166 0 5 chr9 104934742 104934935 -37336509 - AluSx SINE Alu -120 192 1 237 254 0 0 chr9 104935318 104935373 -37336071 - L1 LINE L1 -1042 5104 5050 2515 178 14 44 chr9 104935459 104935699 -37335745 - L1 LINE L1 -1110 5036 4790 1953 186 58 31 chr9 104935699 104936112 -37335332 + MSTC LTR MaLR 1 424 -4 2515 178 14 44 chr9 104936112 104936438 -37335006 - L1 LINE L1 -1356 4790 4487 449 152 0 0 chr9 104936467 104936546 -37334898 + L1M2 LINE L1 5410 5488 -803 1429 216 32 26 chr9 104936671 104937013 -37334431 + MER7A DNA MER2_type 4 345 -1 2333 106 0 3 chr9 104938329 104938640 -37332804 + AluSx SINE Alu 1 310 -2 200 148 74 19 chr9 104939805 104939859 -37331585 - L2 LINE L2 -10 3262 3206 359 325 24 30 chr9 104942791 104942960 -37328484 - FRAM SINE Alu -5 161 1 212 269 0 0 chr9 104943937 104943989 -37327455 - MIR SINE MIR -103 159 108 1733 179 3 3 chr9 104944034 104944331 -37327113 - AluJb SINE Alu -15 297 1 1574 229 50 13 chr9 104944796 104945193 -37326251 + MLT1F1 LTR MaLR 97 508 -59 332 109 16 16 chr9 104948587 104948631 -37322813 + AluS SINE Alu 1 44 -259 343 45 0 0 chr9 104948631 104948675 -37322769 + AluY SINE Alu 1 44 -256 2298 116 0 0 chr9 104948675 104948976 -37322468 + AluSx SINE Alu 1 301 -11 315 165 0 29 chr9 104949110 104949213 -37322231 + (AGGTG)n Simple_repeat Simple_repeat 3 102 0 2201 103 0 7 chr9 104949589 104949880 -37321564 - AluSq SINE Alu -24 289 1 700 270 144 18 chr9 104949965 104950306 -37321138 - L2 LINE L2 -2 3311 2928 2551 40 3 3 chr9 104952075 104952371 -37319073 - AluY SINE Alu -15 296 1 232 270 16 0 chr9 104952485 104952548 -37318896 - L1 LINE L1 -1183 4963 4900 1948 134 34 3 chr9 104952551 104952843 -37318601 - AluSx SINE Alu -11 301 1 2498 51 10 0 chr9 104953421 104953714 -37317730 - AluSp SINE Alu -17 296 1 668 117 0 0 chr9 104954641 104954735 -37316709 - AluJo/FRAM SINE Alu -16 296 203 305 119 0 0 chr9 104954736 104954778 -37316666 + Alu SINE Alu 1 42 -261 2932 116 94 4 chr9 104955915 104956381 -37315063 - MER9 LTR ERVK -3 508 1 968 130 43 22 chr9 104957249 104957433 -37314011 + MER4C LTR ERV1 1 188 -277 7140 45 8 3 chr9 104957433 104958307 -37313137 - L1PA5 LINE L1 -2 6152 5275 284 308 60 8 chr9 104958421 104958554 -37312890 - MLT1G3 LTR MaLR -387 143 4 2174 84 7 27 chr9 104958783 104959080 -37312364 - AluSx SINE Alu -20 292 2 2422 73 0 22 chr9 104959081 104959396 -37312048 - AluY SINE Alu -3 308 1 2230 105 16 10 chr9 104959518 104959824 -37311620 - AluY SINE Alu -3 308 1 347 111 0 19 chr9 104959830 104959884 -37311560 - Alu SINE Alu -8 292 240 2986 173 15 0 chr9 104959984 104960517 -37310927 + L1P LINE L1 4554 5094 -1052 1876 71 0 5 chr9 104960527 104960751 -37310693 + AluSg SINE Alu 64 286 -24 35 24 0 0 chr9 104960751 104960793 -37310651 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr9 104961409 104961437 -37310007 + AT_rich Low_complexity Low_complexity 1 28 0 1058 176 23 0 chr9 104961545 104961761 -37309683 + L1MA8 LINE L1 6069 6289 -2 1643 186 7 10 chr9 104961960 104962256 -37309188 + AluJo SINE Alu 1 295 -17 468 202 105 8 chr9 104962256 104962380 -37309064 - L1 LINE L1 -801 5345 5210 516 211 41 0 chr9 104962380 104962503 -37308941 + L1M2 LINE L1 5391 5518 -794 2897 190 2 0 chr9 104962517 104963059 -37308385 - L1P LINE L1 -885 5261 4719 7070 159 14 2 chr9 104963069 104964290 -37307154 + L1PA12 LINE L1 3956 5191 -955 1011 189 10 0 chr9 104964295 104964491 -37306953 + L1PB1 LINE L1 3 200 -6663 10525 121 109 17 chr9 104964491 104966318 -37305126 + L1PB1 LINE L1 634 2629 -4234 * 12893 196 17 31 chr9 104966307 104967173 -37304271 + L1PB1 LINE L1 2887 3764 -3103 1832 152 3 10 chr9 104967173 104967462 -37303982 + AluSq SINE Alu 16 302 -11 12893 196 17 31 chr9 104967462 104970572 -37300872 + L1PB1 LINE L1 3764 6812 -55 1785 168 7 10 chr9 104970572 104970875 -37300569 + AluSx SINE Alu 1 302 -10 12893 196 17 31 chr9 104970875 104970931 -37300513 + L1PB1 LINE L1 6812 6867 0 6116 111 10 7 chr9 104970944 104971939 -37299505 + L1PA12 LINE L1 5177 6168 0 1791 233 61 32 chr9 104971939 104972173 -37299271 + L1M4 LINE L1 4763 4989 -1189 862 170 40 10 chr9 104972173 104972373 -37299071 + L1MA8 LINE L1 6084 6289 -2 2397 70 0 0 chr9 104972383 104972727 -37298717 + AluY SINE Alu 1 344 0 1791 233 61 32 chr9 104972727 104973468 -37297976 + L1M4 LINE L1 4997 5777 -401 616 217 7 44 chr9 104973479 104973606 -37297838 + L1MB7 LINE L1 5628 5744 -434 1960 199 14 44 chr9 104973606 104973986 -37297458 - MSTB LTR MaLR -4 422 55 2038 153 3 0 chr9 104973986 104974293 -37297151 - AluSg SINE Alu -2 308 1 1960 199 14 44 chr9 104974293 104974345 -37297099 - MSTB LTR MaLR -371 55 3 616 217 7 44 chr9 104974345 104974473 -37296971 + L1MB7 LINE L1 5744 5875 -303 235 330 39 29 chr9 104974481 104974584 -37296860 - MIR SINE MIR -97 165 62 237 289 72 0 chr9 104976319 104976402 -37295042 - L2 LINE L2 0 3313 3225 245 258 34 22 chr9 104976569 104976658 -37294786 + MIR SINE MIR 66 155 -107 273 29 0 0 chr9 104976688 104976722 -37294722 + (CA)n Simple_repeat Simple_repeat 2 35 0 385 241 36 9 chr9 104976738 104976850 -37294594 + MIR SINE MIR 148 262 0 186 356 111 7 chr9 104977618 104977753 -37293691 + L2 LINE L2 2571 2719 -595 21 0 0 0 chr9 104977767 104977788 -37293656 + AT_rich Low_complexity Low_complexity 1 21 0 2009 112 11 0 chr9 104978012 104978297 -37293147 + AluSg SINE Alu 6 293 -17 572 158 45 8 chr9 104978738 104978871 -37292573 - L1 LINE L1 -1633 4513 4376 852 39 0 0 chr9 104978871 104978974 -37292470 - L1PA4 LINE L1 -4 6151 6049 463 279 61 0 chr9 104979012 104979159 -37292285 + MIR SINE MIR 2 157 -105 23 68 0 0 chr9 104979520 104979564 -37291880 + AT_rich Low_complexity Low_complexity 1 44 0 215 374 73 0 chr9 104979690 104979813 -37291631 + MIR SINE MIR 18 149 -113 757 303 51 70 chr9 104979989 104980520 -37290924 + LTR33 LTR ERVL 1 521 0 1986 145 0 0 chr9 104981103 104981385 -37290059 + AluSx SINE Alu 1 282 -30 234 62 0 0 chr9 104981388 104981420 -37290024 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1702 176 56 139 chr9 104982349 104982953 -37288491 - MLT2B3 LTR ERVL 0 554 1 243 248 89 20 chr9 104983275 104983376 -37288068 + L1MCa LINE L1 659 766 -5660 3148 256 33 65 chr9 104983399 104983633 -37287811 + L1MCa LINE L1 2294 2534 -3892 2231 111 3 0 chr9 104983633 104983930 -37287514 - AluSx SINE Alu -14 298 1 3148 256 33 65 chr9 104983930 104984735 -37286709 + L1MCa LINE L1 2534 3251 -3175 1961 42 0 0 chr9 104984735 104984972 -37286472 + L1PA4 LINE L1 5911 6147 -8 3148 256 33 65 chr9 104984972 104985573 -37285871 + L1MCa LINE L1 3251 3870 -2556 26 0 0 0 chr9 104985638 104985664 -37285780 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr9 104986193 104986220 -37285224 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chr9 104986285 104986334 -37285110 + AT_rich Low_complexity Low_complexity 1 49 0 37 62 0 0 chr9 104987719 104987784 -37283660 + AT_rich Low_complexity Low_complexity 1 65 0 540 317 35 51 chr9 104987802 104988234 -37283210 + L1M3e LINE L1 1418 1842 -5188 2152 261 16 13 chr9 104988238 104988911 -37282533 + L1M3e LINE L1 3430 4104 -3002 1161 78 7 0 chr9 104988886 104989039 -37282405 + L1P2 LINE L1 6461 6614 -500 * 3889 117 94 110 chr9 104989040 104990575 -37280869 - pTR5 LTR ERV1 -9 2429 69 3984 46 4 2 chr9 104990575 104991077 -37280367 + L1PA5 LINE L1 5652 6154 0 304 191 111 16 chr9 104991082 104991208 -37280236 + L1M3e LINE L1 4100 4237 -2869 441 176 0 12 chr9 104991208 104991317 -37280127 + L1PA11 LINE L1 6079 6174 0 2828 178 108 9 chr9 104991317 104991443 -37280001 + L1 LINE L1 3140 3252 -2894 693 30 0 50 chr9 104991443 104991542 -37279902 + L1PA5 LINE L1 6061 6154 0 2828 178 108 9 chr9 104991542 104992116 -37279328 + L1 LINE L1 3252 3910 -2236 24 77 0 0 chr9 104992748 104992800 -37278644 + AT_rich Low_complexity Low_complexity 1 52 0 2238 233 29 4 chr9 104992803 104993361 -37278083 - L1PA16 LINE L1 -2409 4697 4126 6296 187 61 13 chr9 104993361 104994049 -37277395 + L1PA16 LINE L1 4690 5344 -1782 2410 76 0 13 chr9 104994049 104994363 -37277081 + AluY SINE Alu 1 310 -1 6296 187 61 13 chr9 104994363 104996008 -37275436 + L1PA16 LINE L1 5344 7125 -1 1745 201 10 48 chr9 104996016 104996410 -37275034 - MLT1B LTR MaLR -4 386 8 289 270 0 0 chr9 104996408 104996471 -37274973 + LTR19C LTR ERV1 715 777 -2 * 4677 103 12 25 chr9 104996512 104997262 -37274182 - L1MA1 LINE L1 0 6302 5563 1639 169 48 3 chr9 104997803 104998093 -37273351 + AluSx SINE Alu 1 303 -9 2108 173 40 23 chr9 104998389 104998864 -37272580 - L1MB7 LINE L1 0 6184 5702 27 29 0 0 chr9 104999871 104999905 -37271539 + AT_rich Low_complexity Low_complexity 1 34 0 1779 234 22 58 chr9 104999907 105000446 -37270998 - MLT2B1 LTR ERVL 0 520 1 573 208 15 3 chr9 105001674 105001825 -37269619 - L1MB8 LINE L1 -338 5840 5691 372 344 78 43 chr9 105002150 105002545 -37268899 - HAL1b LINE L1 -863 485 77 22 0 0 0 chr9 105002995 105003017 -37268427 + AT_rich Low_complexity Low_complexity 1 22 0 3995 156 21 35 chr9 105003747 105004543 -37266901 - LTR1 LTR ERV1 0 785 1 2059 98 14 20 chr9 105005849 105006145 -37265299 + AluSp SINE Alu 1 294 -19 1862 115 3 51 chr9 105006391 105006735 -37264709 + AluSx SINE Alu 1 330 0 383 313 85 85 chr9 105006741 105007329 -37264115 - L1MEd LINE L1 -4873 1246 659 251 315 99 9 chr9 105007329 105007561 -37263883 - HAL1 LINE L1 -134 2373 2121 204 67 0 0 chr9 105007982 105008012 -37263432 + (A)n Simple_repeat Simple_repeat 1 30 0 2248 87 3 3 chr9 105008014 105008312 -37263132 + AluY SINE Alu 1 298 -13 453 284 8 81 chr9 105009020 105009256 -37262188 + MER20 DNA MER1_type 1 219 0 192 219 0 0 chr9 105010060 105010142 -37261302 + (TA)n Simple_repeat Simple_repeat 1 82 0 30 0 0 24 chr9 105010743 105010754 -37260690 + AT_rich Low_complexity Low_complexity 1 11 -29 2266 85 7 3 chr9 105010754 105011061 -37260383 - AluY SINE Alu -3 308 1 30 0 0 24 chr9 105011061 105011090 -37260354 + AT_rich Low_complexity Low_complexity 11 40 0 887 183 78 5 chr9 105011110 105011329 -37260115 - L1MA8 LINE L1 -2 6289 6055 694 12 0 0 chr9 105011502 105011584 -37259860 - L1MA2 LINE L1 -456 5848 5767 285 266 51 76 chr9 105011646 105011804 -37259640 - MLT1G LTR MaLR -2 588 435 349 266 36 43 chr9 105013165 105013304 -37258140 + MIR SINE MIR 76 213 -49 1382 268 56 19 chr9 105013888 105014620 -37256824 + L1M4 LINE L1 2584 3342 -2804 315 0 0 0 chr9 105014651 105014686 -37256758 + (TG)n Simple_repeat Simple_repeat 2 36 0 4429 228 35 9 chr9 105014798 105015613 -37255831 + L1MA10 LINE L1 4788 5661 -673 630 99 0 0 chr9 105015613 105015704 -37255740 + (TA)n Simple_repeat Simple_repeat 2 92 0 4429 228 35 9 chr9 105015704 105016381 -37255063 + L1MA10 LINE L1 5661 6319 -15 789 264 76 9 chr9 105016467 105016782 -37254662 + L1M4 LINE L1 4269 4604 -1542 2407 199 23 13 chr9 105016793 105017321 -37254123 + L1MC3 LINE L1 7233 7765 -20 2020 269 94 9 chr9 105018393 105019138 -37252306 + L1MC4a LINE L1 6974 7781 -27 26 0 0 0 chr9 105019154 105019180 -37252264 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr9 105019271 105019314 -37252130 + AT_rich Low_complexity Low_complexity 1 43 0 289 211 26 26 chr9 105019950 105020026 -37251418 - MIR SINE MIR -87 175 100 1628 225 20 20 chr9 105020032 105020432 -37251012 + MLT1C LTR MaLR 1 400 -67 22 0 0 0 chr9 105020785 105020807 -37250637 + AT_rich Low_complexity Low_complexity 1 22 0 1896 215 14 3 chr9 105022094 105022462 -37248982 + L1M1 LINE L1 10 381 -7184 * 12141 185 38 8 chr9 105022457 105027712 -37243732 + L1M1 LINE L1 1469 6932 -743 900 150 7 0 chr9 105027709 105027862 -37243582 - L1P LINE L1 -2635 3511 3358 * 1273 215 19 51 chr9 105028378 105028690 -37242754 + AluJo SINE Alu 1 302 -10 27 0 0 0 chr9 105031537 105031564 -37239880 + AT_rich Low_complexity Low_complexity 1 27 0 1000 275 148 49 chr9 105031956 105032523 -37238921 + L1ME3A LINE L1 5532 6154 -8 22 56 0 0 chr9 105032906 105032942 -37238502 + AT_rich Low_complexity Low_complexity 1 36 0 27 19 0 57 chr9 105032999 105033019 -37238425 + AT_rich Low_complexity Low_complexity 1 21 -29 1688 179 7 0 chr9 105033019 105033304 -37238140 + AluJb SINE Alu 1 287 -25 27 19 0 57 chr9 105033304 105033336 -37238108 + AT_rich Low_complexity Low_complexity 21 50 0 24 32 0 0 chr9 105033651 105033682 -37237762 + AT_rich Low_complexity Low_complexity 1 31 0 228 417 46 0 chr9 105034146 105034321 -37237123 - MIR SINE MIR -79 183 1 13938 204 50 24 chr9 105034860 105037774 -37233670 + ERVL LTR ERVL 658 3647 -2117 345 321 22 47 chr9 105039734 105040011 -37231433 - L1ME3A LINE L1 -281 5889 5620 2003 144 68 14 chr9 105040080 105040434 -37231010 + THE1C LTR MaLR 1 373 -2 9232 141 42 7 chr9 105040436 105041959 -37229485 + THE1C-int LTR MaLR 1 1576 -4 1980 152 41 22 chr9 105041970 105042338 -37229106 + THE1C LTR MaLR 1 375 0 231 224 0 0 chr9 105042400 105042449 -37228995 - L1ME3A LINE L1 -675 5446 5398 55 16 0 0 chr9 105042452 105042514 -37228930 + AT_rich Low_complexity Low_complexity 1 62 0 234 156 44 0 chr9 105042859 105042904 -37228540 - MER58B DNA MER1_type -28 313 267 435 385 67 6 chr9 105043729 105043908 -37227536 + MER91A DNA MER1_type 4 193 -3 2551 205 42 60 chr9 105044656 105045324 -37226120 - L1MB8 LINE L1 -38 6140 5484 1467 184 14 34 chr9 105045324 105045618 -37225826 - AluJo SINE Alu -24 288 1 2551 205 42 60 chr9 105045618 105045643 -37225801 - L1MB8 LINE L1 -694 5484 5460 3198 169 5 3 chr9 105045677 105046244 -37225200 - L1PA16 LINE L1 -2 6164 5597 25 65 0 0 chr9 105046711 105046757 -37224687 + AT_rich Low_complexity Low_complexity 1 46 0 296 211 26 0 chr9 105047048 105047124 -37224320 - L1MA10 LINE L1 -13 6321 6244 1704 169 43 27 chr9 105047296 105047664 -37223780 + THE1C LTR MaLR 2 375 0 545 216 124 45 chr9 105047816 105048195 -37223249 + L1M4 LINE L1 4334 4742 -1404 2220 109 0 0 chr9 105048669 105048972 -37222472 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr9 105049963 105049984 -37221460 + AT_rich Low_complexity Low_complexity 1 21 0 602 323 48 9 chr9 105050232 105050461 -37220983 - MIR SINE MIR -10 252 15 4348 195 33 7 chr9 105050487 105051404 -37220040 + L1PA15 LINE L1 3679 4619 -1527 5557 117 21 9 chr9 105051438 105052398 -37219046 + L1PB2 LINE L1 5179 6149 -2 5429 171 31 3 chr9 105052431 105053945 -37217499 + L1PA15 LINE L1 4603 6162 -3 1843 210 20 3 chr9 105054066 105054698 -37216746 - L1P4 LINE L1 -578 5588 4946 * 5249 235 25 15 chr9 105054693 105056153 -37215291 + L1 LINE L1 3107 4581 -1565 348 295 127 6 chr9 105056163 105056336 -37215108 + L1ME LINE L1 5263 5456 -706 22 0 0 0 chr9 105057040 105057062 -37214382 + AT_rich Low_complexity Low_complexity 1 22 0 1815 151 3 35 chr9 105057496 105057808 -37213636 + AluSx SINE Alu 1 302 -10 25 31 0 0 chr9 105058100 105058132 -37213312 + AT_rich Low_complexity Low_complexity 1 32 0 227 196 22 43 chr9 105058203 105058343 -37213101 + (TATAA)n Simple_repeat Simple_repeat 1 136 0 1604 196 0 4 chr9 105058872 105059153 -37212291 + AluJb SINE Alu 10 289 -23 21 0 0 0 chr9 105060006 105060027 -37211417 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr9 105061337 105061368 -37210076 + (TG)n Simple_repeat Simple_repeat 2 32 0 744 142 16 16 chr9 105061379 105061506 -37209938 - FLAM_C SINE Alu -16 127 1 237 245 0 0 chr9 105062874 105062923 -37208521 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 24 0 0 0 chr9 105062958 105062982 -37208462 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 105063017 105063041 -37208403 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr9 105063334 105063379 -37208065 + AT_rich Low_complexity Low_complexity 1 45 0 209 132 26 0 chr9 105063388 105063426 -37208018 + (TA)n Simple_repeat Simple_repeat 2 40 0 232 310 62 55 chr9 105064341 105064486 -37206958 + MIR SINE MIR 13 158 -104 1368 148 21 0 chr9 105064517 105064753 -37206691 - L1MA7 LINE L1 -351 5940 5700 25 31 0 0 chr9 105064756 105064788 -37206656 + AT_rich Low_complexity Low_complexity 1 32 0 188 211 0 39 chr9 105064841 105064893 -37206551 + MIR SINE MIR 177 226 -36 21 57 0 0 chr9 105065041 105065076 -37206368 + AT_rich Low_complexity Low_complexity 1 35 0 1708 176 13 0 chr9 105066314 105066620 -37204824 - AluJb SINE Alu 0 312 3 23 54 0 0 chr9 105067123 105067160 -37204284 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr9 105067222 105067246 -37204198 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr9 105067551 105067576 -37203868 + (TA)n Simple_repeat Simple_repeat 2 26 0 353 143 71 0 chr9 105067579 105067649 -37203795 + L1MA9 LINE L1 6238 6312 0 443 314 128 63 chr9 105067874 105068240 -37203204 + L2 LINE L2 2922 3311 -2 209 211 19 0 chr9 105068516 105068568 -37202876 + GA-rich Low_complexity Low_complexity 1 53 0 735 321 63 46 chr9 105069251 105069727 -37201717 + L1M3b LINE L1 1 484 -5797 649 276 41 5 chr9 105070102 105070298 -37201146 + L1M3b LINE L1 1122 1324 -4957 * 7553 169 27 16 chr9 105070297 105070902 -37200542 + L1MA6 LINE L1 1173 1770 -5795 183 42 0 0 chr9 105070902 105070926 -37200518 + (CAGAGA)n Simple_repeat Simple_repeat 2 25 0 7553 169 27 16 chr9 105070926 105071693 -37199751 + L1MA6 LINE L1 1770 2560 -5005 5720 220 16 7 chr9 105071687 105073026 -37198418 + L1MA6 LINE L1 3762 5113 -2452 * 2595 132 11 18 chr9 105073045 105073484 -37197960 - L1MA1 LINE L1 -185 6117 5682 * 4725 189 24 1 chr9 105073481 105074390 -37197054 + L1MA6 LINE L1 6781 7710 -9 24 32 0 0 chr9 105074741 105074772 -37196672 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr9 105075479 105075503 -37195941 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr9 105075699 105075740 -37195704 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr9 105076229 105076251 -37195193 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr9 105076276 105076325 -37195119 + AT_rich Low_complexity Low_complexity 1 49 0 1697 205 65 18 chr9 105077149 105077592 -37193852 - MER101 LTR ERV1 0 474 11 1548 132 8 16 chr9 105077771 105078028 -37193416 + AluJb SINE Alu 9 263 -49 417 141 0 0 chr9 105078043 105078128 -37193316 + (TC)n Simple_repeat Simple_repeat 1 85 0 198 0 0 0 chr9 105078486 105078508 -37192936 + (TTA)n Simple_repeat Simple_repeat 3 24 0 984 35 0 0 chr9 105078510 105078625 -37192819 - L1PA3 LINE L1 -17 6138 6024 364 317 64 34 chr9 105079290 105079555 -37191889 + LTR16B LTR ERVL 185 457 -7 1214 311 51 18 chr9 105080635 105080839 -37190605 + L1MC4 LINE L1 6489 6685 -1357 474 75 0 0 chr9 105080839 105080906 -37190538 + (CATA)n Simple_repeat Simple_repeat 3 69 0 1214 311 51 18 chr9 105080906 105081273 -37190171 + L1MC4 LINE L1 6685 7079 -963 403 117 0 0 chr9 105081597 105081680 -37189764 + AluS SINE Alu 229 309 0 400 220 10 120 chr9 105081680 105081880 -37189564 + L1ME2 LINE L1 5885 6062 -102 692 246 16 11 chr9 105081916 105082099 -37189345 + L1MA10 LINE L1 6149 6332 -2 218 191 24 0 chr9 105082243 105082285 -37189159 + (TG)n Simple_repeat Simple_repeat 2 44 0 301 340 37 47 chr9 105083222 105083413 -37188031 - L1ME LINE L1 -540 5626 5438 417 240 31 0 chr9 105083418 105083514 -37187930 + MLT1I LTR MaLR 311 409 0 681 223 0 0 chr9 105085199 105085329 -37186115 + FLAM_C SINE Alu 4 133 -10 433 156 22 44 chr9 105085339 105085429 -37186015 - MLT2B2 LTR ERVL -265 289 202 1462 169 67 12 chr9 105085430 105085761 -37185683 - L1MA8 LINE L1 -1 6290 5942 1016 178 5 0 chr9 105085774 105085971 -37185473 + L1M2 LINE L1 5254 5451 -840 890 152 20 0 chr9 105085995 105086146 -37185298 - MLT2B2 LTR ERVL -356 159 6 592 190 0 0 chr9 105086146 105086246 -37185198 + MER58B DNA MER1_type 236 335 -6 498 268 142 24 chr9 105087193 105087398 -37184046 - MIR SINE MIR -3 259 31 662 292 36 5 chr9 105087570 105087765 -37183679 - MIR SINE MIR -49 213 13 210 37 0 0 chr9 105087868 105087895 -37183549 + (CA)n Simple_repeat Simple_repeat 2 28 0 237 361 57 25 chr9 105088962 105089084 -37182360 + MIR SINE MIR 125 250 -12 190 364 124 0 chr9 105089517 105089638 -37181806 - L2 LINE L2 -3 3310 3175 236 299 0 0 chr9 105090353 105090420 -37181024 + (CAT)n Simple_repeat Simple_repeat 1 67 0 209 295 0 33 chr9 105090430 105090491 -37180953 - MIR SINE MIR -174 88 30 283 273 118 9 chr9 105090813 105090923 -37180521 + MIR SINE MIR 127 248 -14 252 0 0 0 chr9 105091311 105091339 -37180105 + (TC)n Simple_repeat Simple_repeat 1 28 0 1365 188 70 0 chr9 105091488 105091759 -37179685 + AluJb SINE Alu 1 290 -22 391 305 52 26 chr9 105091879 105092033 -37179411 + MIR SINE MIR 45 202 -60 39311 77 12 3 chr9 105093446 105099538 -37171906 - L1PA5 LINE L1 -4 6150 4 46 62 0 0 chr9 105099710 105099791 -37171653 + AT_rich Low_complexity Low_complexity 1 81 0 23 33 0 0 chr9 105099912 105099942 -37171502 + AT_rich Low_complexity Low_complexity 1 30 0 3923 185 5 17 chr9 105100822 105101232 -37170212 - L1P LINE L1 -3578 2568 2155 200 59 29 0 chr9 105101232 105101266 -37170178 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 8275 68 6 170 chr9 105101266 105102897 -37168547 - SVA Other Other -23 1363 1 3923 185 5 17 chr9 105102897 105103267 -37168177 - L1P LINE L1 -3989 2157 1796 * 5370 164 14 12 chr9 105103259 105103292 -37168152 + L1PA13 LINE L1 4232 4263 -1905 1809 179 7 0 chr9 105103292 105103599 -37167845 - AluSx SINE Alu -3 309 1 5370 164 14 12 chr9 105103599 105104823 -37166621 + L1PA13 LINE L1 4263 5495 -673 2062 139 3 7 chr9 105104823 105105125 -37166319 + AluSq SINE Alu 1 301 -12 5370 164 14 12 chr9 105105125 105105612 -37165832 + L1PA13 LINE L1 5495 5980 -188 1046 114 38 16 chr9 105105740 105105924 -37165520 - MLT2A1 LTR ERVL -255 189 2 745 93 0 0 chr9 105105924 105106032 -37165412 + L1PA13 LINE L1 6056 6163 0 27 49 0 0 chr9 105110537 105110578 -37160866 + AT_rich Low_complexity Low_complexity 1 41 0 40 21 0 0 chr9 105110640 105110687 -37160757 + AT_rich Low_complexity Low_complexity 1 47 0 342 169 0 39 chr9 105110861 105110938 -37160506 - MLT1F1 LTR MaLR -24 543 470 26 0 0 0 chr9 105111252 105111278 -37160166 + AT_rich Low_complexity Low_complexity 1 26 0 1682 106 7 49 chr9 105111907 105112191 -37159253 + L1P5 LINE L1 5504 5775 -376 1921 169 6 0 chr9 105112208 105112527 -37158917 + MLT-int LTR MaLR 77 397 -1338 1458 138 54 3 chr9 105112535 105112833 -37158611 - L1P LINE L1 -2454 3692 3380 1253 230 112 39 chr9 105113309 105113666 -37157778 + MLT1D LTR MaLR 1 383 -122 306 0 0 0 chr9 105115750 105115784 -37155660 + (TG)n Simple_repeat Simple_repeat 1 34 0 458 222 104 30 chr9 105115872 105116007 -37155437 - L1ME1 LINE L1 -30 6136 5992 1252 261 144 11 chr9 105116050 105116494 -37154950 - L1ME1 LINE L1 -281 6680 6181 2035 305 56 65 chr9 105116584 105116742 -37154702 - L1ME1 LINE L1 -877 6064 5906 2038 138 0 0 chr9 105116742 105117032 -37154412 - AluSc SINE Alu -19 290 1 2035 305 56 65 chr9 105117032 105118158 -37153286 - L1ME1 LINE L1 -1035 5906 4791 1268 283 127 16 chr9 105118225 105119344 -37152100 - L1ME1 LINE L1 -3067 3874 2679 29 0 0 0 chr9 105119351 105119380 -37152064 + AT_rich Low_complexity Low_complexity 1 29 0 11927 219 49 22 chr9 105119464 105119837 -37151607 - L1PA16 LINE L1 -1 7749 7388 1843 169 52 9 chr9 105119837 105120186 -37151258 - THE1B LTR MaLR 0 364 1 10296 108 18 31 chr9 105120186 105121786 -37149658 - THE1B-int LTR MaLR 0 1580 1 2102 148 28 6 chr9 105121786 105122138 -37149306 - THE1B LTR MaLR 0 364 5 11927 219 49 22 chr9 105122138 105127232 -37144212 - L1PA16 LINE L1 -361 7389 2199 363 253 55 0 chr9 105127509 105127600 -37143844 - L1PA16 LINE L1 -5400 2181 2086 485 350 126 11 chr9 105127978 105128421 -37143023 - L1ME1 LINE L1 -5912 511 18 887 183 22 0 chr9 105128653 105128833 -37142611 - L1MD1 LINE L1 -1 6241 6058 25 0 0 0 chr9 105129054 105129079 -37142365 + AT_rich Low_complexity Low_complexity 1 25 0 2060 134 0 13 chr9 105129355 105129668 -37141776 - AluSx SINE Alu -3 309 1 255 161 0 0 chr9 105129754 105129810 -37141634 + CT-rich Low_complexity Low_complexity 2 57 0 1269 242 34 19 chr9 105130020 105130772 -37140672 + L1M3 LINE L1 4824 5696 -638 2181 193 48 11 chr9 105130933 105131374 -37140070 - MSTB2 LTR MaLR 0 457 1 791 237 6 0 chr9 105132057 105132213 -37139231 - FRAM SINE Alu -20 156 1 232 303 0 0 chr9 105134121 105134187 -37137257 - L1MC5 LINE L1 -867 7094 7029 468 307 0 7 chr9 105134400 105134540 -37136904 - L1MC4a LINE L1 -947 6861 6723 346 331 43 50 chr9 105134647 105134928 -37136516 - L1M4 LINE L1 -3734 2412 2134 218 175 0 0 chr9 105135217 105135257 -37136187 + (CA)n Simple_repeat Simple_repeat 1 40 0 376 299 68 65 chr9 105135524 105135774 -37135670 - L1M4 LINE L1 -1836 4310 4057 1496 203 31 127 chr9 105135774 105136450 -37134994 + LTR9 LTR ERV1 2 612 0 376 299 68 65 chr9 105136450 105136537 -37134907 - L1M4 LINE L1 -2089 4057 3972 361 86 86 0 chr9 105136545 105136615 -37134829 - L1MB7 LINE L1 0 6184 6109 2180 226 22 20 chr9 105136618 105136964 -37134480 - L1MB8 LINE L1 -311 5867 5522 1794 155 10 3 chr9 105136964 105137254 -37134190 - AluSx SINE Alu -15 297 6 2180 226 22 20 chr9 105137254 105137582 -37133862 - L1MB8 LINE L1 -656 5522 5196 917 216 100 4 chr9 105137601 105137842 -37133602 - L1MC2 LINE L1 -6 6338 6075 1715 264 39 30 chr9 105137861 105138400 -37133044 - MER74A LTR ERVL -14 544 1 562 200 37 37 chr9 105138400 105138535 -37132909 - L1MC2 LINE L1 -265 6079 5945 1526 98 86 0 chr9 105138535 105138769 -37132675 + MER41A LTR ERV1 1 254 -300 2108 192 121 2 chr9 105138769 105139306 -37132138 - L1MC2 LINE L1 -2087 5908 5308 698 267 63 4 chr9 105139288 105139543 -37131901 + L1MA4 LINE L1 6020 6289 -11 * 1600 282 30 54 chr9 105139558 105140222 -37131222 - L1M4 LINE L1 -5879 663 16 23 33 0 0 chr9 105140321 105140351 -37131093 + AT_rich Low_complexity Low_complexity 1 30 0 3373 132 65 7 chr9 105140661 105141261 -37130183 - LTR24C LTR ERV1 0 635 1 2602 113 75 7 chr9 105142108 105142487 -37128957 + MLT2A1 LTR ERVL 1 412 -32 414 0 0 0 chr9 105142487 105142533 -37128911 + (TA)n Simple_repeat Simple_repeat 2 47 0 2602 113 75 7 chr9 105142533 105142569 -37128875 + MLT2A1 LTR ERVL 412 444 0 22 0 0 0 chr9 105143551 105143573 -37127871 + AT_rich Low_complexity Low_complexity 1 22 0 336 230 71 0 chr9 105143854 105143967 -37127477 - L1MC4 LINE L1 -8 8034 7914 684 266 41 41 chr9 105144035 105144351 -37127093 - L1MC4 LINE L1 -152 7890 7575 448 341 24 6 chr9 105145038 105145205 -37126239 + MIR SINE MIR 74 243 -19 21 89 0 0 chr9 105145691 105145747 -37125697 + AT_rich Low_complexity Low_complexity 1 56 0 298 336 74 23 chr9 105145751 105145968 -37125476 - MIR SINE MIR -1 261 34 245 200 77 15 chr9 105146133 105146198 -37125246 - MLT1L LTR MaLR -63 552 484 337 316 0 0 chr9 105146594 105146708 -37124736 - MER103 DNA DNA -48 118 5 235 258 169 11 chr9 105147673 105147762 -37123682 - MIR SINE MIR -16 246 144 3974 144 48 14 chr9 105147996 105148684 -37122760 + MER50 LTR ERV1 1 711 -23 336 232 0 0 chr9 105148747 105148816 -37122628 - MER20 DNA MER1_type -1 218 150 3096 188 27 14 chr9 105149226 105149818 -37121626 - MER6A DNA MER2_type 0 605 6 2151 149 8 24 chr9 105150399 105150769 -37120675 - THE1B LTR MaLR 0 364 1 622 325 10 0 chr9 105150774 105150971 -37120473 - LTR16B LTR ERVL -2 462 264 247 141 65 18 chr9 105151373 105151543 -37119901 + (TA)n Simple_repeat Simple_repeat 1 178 0 2007 136 7 3 chr9 105151614 105151923 -37119521 - AluSx SINE Alu -2 310 1 2930 106 29 2 chr9 105154757 105155201 -37116243 + L1MA1 LINE L1 5847 6302 0 230 258 167 0 chr9 105156089 105156155 -37115289 + LTR40c LTR ERVL 35 111 -354 2112 137 3 0 chr9 105156181 105156488 -37114956 + AluSq SINE Alu 1 308 -5 37 39 0 0 chr9 105156611 105156662 -37114782 + AT_rich Low_complexity Low_complexity 1 51 0 296 348 28 52 chr9 105156673 105156923 -37114521 + HERVL LTR ERVL 1915 2158 -3496 23 78 0 0 chr9 105157154 105157205 -37114239 + AT_rich Low_complexity Low_complexity 1 51 0 294 29 0 0 chr9 105157458 105157493 -37113951 + (CA)n Simple_repeat Simple_repeat 1 35 0 1962 121 10 13 chr9 105157494 105157799 -37113645 + L1PB1 LINE L1 5794 6097 -54 24 0 0 0 chr9 105157799 105157823 -37113621 + AT_rich Low_complexity Low_complexity 1 24 0 511 180 0 20 chr9 105158083 105158183 -37113261 + MER4A LTR ERV1 1 98 -566 1959 111 9 27 chr9 105158183 105158534 -37112910 + MER4A LTR ERV1 261 664 0 1881 214 24 36 chr9 105158540 105158955 -37112489 + MSTB1 LTR MaLR 21 430 -2 545 319 48 85 chr9 105158971 105159467 -37111977 - L2 LINE L2 -534 2780 2303 313 301 42 51 chr9 105159649 105159865 -37111579 + L1M4 LINE L1 2771 2984 -3162 24 32 0 0 chr9 105159891 105159922 -37111522 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 105160447 105160470 -37110974 + AT_rich Low_complexity Low_complexity 1 23 0 14660 199 102 11 chr9 105161683 105161730 -37109714 - L1M1 LINE L1 -751 6840 6799 4893 128 18 8 chr9 105161730 105162563 -37108881 - L1MA2 LINE L1 -8 6296 5456 14660 199 102 11 chr9 105162563 105168695 -37102749 - L1M1 LINE L1 -792 6799 12 711 291 17 26 chr9 105168935 105169169 -37102275 + MIR SINE MIR 22 253 -9 26 74 0 0 chr9 105169222 105169276 -37102168 + AT_rich Low_complexity Low_complexity 1 54 0 1779 116 6 88 chr9 105169300 105169619 -37101825 - AluSx SINE Alu -15 297 5 331 263 22 95 chr9 105169671 105169729 -37101715 - L1ME LINE L1 -302 5819 5758 770 270 28 0 chr9 105169729 105169940 -37101504 - MER20 DNA MER1_type -2 217 1 331 263 22 95 chr9 105169940 105170060 -37101384 - L1ME LINE L1 -363 5758 5654 485 301 67 34 chr9 105170594 105170803 -37100641 + MIR SINE MIR 36 251 -11 24 0 0 0 chr9 105171031 105171055 -37100389 + AT_rich Low_complexity Low_complexity 1 24 0 1924 93 10 55 chr9 105171073 105171363 -37100081 - AluSc SINE Alu -30 279 3 376 302 55 75 chr9 105171591 105171975 -37099469 + L1MEd LINE L1 798 1173 -4946 26 50 0 0 chr9 105172156 105172196 -37099248 + AT_rich Low_complexity Low_complexity 1 40 0 2025 138 0 0 chr9 105172267 105172563 -37098881 - AluSx SINE Alu -16 296 1 1520 180 53 8 chr9 105172778 105173224 -37098220 - L1PA16 LINE L1 -725 5441 4975 3370 150 64 37 chr9 105173225 105173386 -37098058 + L1PA16 LINE L1 5461 5616 -550 1914 112 35 11 chr9 105173386 105173696 -37097748 + AluSq SINE Alu 5 313 0 3370 150 64 37 chr9 105173696 105174202 -37097242 + L1PA16 LINE L1 5616 6146 -20 262 255 71 10 chr9 105174204 105174302 -37097142 + L1MEd LINE L1 2932 3035 -3094 28 48 0 0 chr9 105174930 105174972 -37096472 + AT_rich Low_complexity Low_complexity 1 42 0 504 277 148 0 chr9 105175008 105175163 -37096281 - MIR SINE MIR -21 241 64 22 35 0 0 chr9 105175227 105175256 -37096188 + AT_rich Low_complexity Low_complexity 1 29 0 1616 149 16 107 chr9 105175300 105175682 -37095762 - MER7A DNA MER2_type -1 345 1 243 280 21 0 chr9 105175814 105175907 -37095537 + (TA)n Simple_repeat Simple_repeat 1 95 0 281 195 11 23 chr9 105176283 105176370 -37095074 + L1ME4a LINE L1 5830 5915 -206 320 300 0 27 chr9 105176539 105176649 -37094795 - MLT1K LTR MaLR -12 576 470 27 29 0 0 chr9 105176840 105176874 -37094570 + AT_rich Low_complexity Low_complexity 1 34 0 680 189 14 14 chr9 105177000 105177148 -37094296 - L1P4 LINE L1 -2229 3917 3770 327 288 11 54 chr9 105177166 105177350 -37094094 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 213 91 36 18 chr9 105177703 105177758 -37093686 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 266 287 23 0 chr9 105177826 105177913 -37093531 - L1ME LINE L1 -518 5603 5515 4745 170 18 84 chr9 105179203 105179449 -37091995 + L1MA10 LINE L1 4995 5256 -1078 1545 185 3 23 chr9 105179449 105179752 -37091692 - AluJb SINE Alu -15 297 1 4745 170 18 84 chr9 105179752 105180926 -37090518 + L1MA10 LINE L1 5256 6333 -1 320 354 46 26 chr9 105181530 105181725 -37089719 - MIR SINE MIR -36 226 28 23 33 0 0 chr9 105181806 105181836 -37089608 + AT_rich Low_complexity Low_complexity 1 30 0 628 236 0 0 chr9 105181837 105181964 -37089480 - FRAM SINE Alu -24 152 26 30 45 0 0 chr9 105182044 105182088 -37089356 + AT_rich Low_complexity Low_complexity 1 44 0 200 309 106 0 chr9 105182583 105182677 -37088767 - MIR SINE MIR -112 150 47 1558 203 80 14 chr9 105182677 105183041 -37088403 - MLT1B LTR MaLR 0 390 3 358 234 19 28 chr9 105183205 105183312 -37088132 + T-rich Low_complexity Low_complexity 4 109 0 846 265 55 76 chr9 105183455 105183877 -37087567 - L1ME LINE L1 -5621 449 37 233 301 36 12 chr9 105184459 105184542 -37086902 + MIR SINE MIR 31 115 -147 1847 216 28 6 chr9 105185173 105185535 -37085909 + Tigger7 DNA MER2_type 1 370 -363 289 176 0 0 chr9 105185577 105185667 -37085777 - AluJ/FRAM SINE Alu 0 321 232 617 221 8 8 chr9 105185680 105185811 -37085633 + Tigger7 DNA MER2_type 2456 2586 -1 2355 78 0 0 chr9 105185920 105186226 -37085218 + AluY SINE Alu 1 306 -5 189 0 0 0 chr9 105186806 105186827 -37084617 + (TC)n Simple_repeat Simple_repeat 1 21 0 1057 324 28 22 chr9 105186968 105187511 -37083933 - L1ME3A LINE L1 -22 6148 5603 246 167 0 0 chr9 105187522 105187582 -37083862 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 301 229 24 12 chr9 105187584 105187667 -37083777 - L1ME3A LINE L1 -2460 5582 5499 323 196 137 3 chr9 105187861 105187952 -37083492 - MLT1I LTR MaLR -238 171 96 1014 298 76 21 chr9 105188080 105188980 -37082464 - L1ME3A LINE L1 -745 5401 4527 1568 185 98 6 chr9 105189708 105190065 -37081379 - MLT1B LTR MaLR 0 390 1 1886 145 0 10 chr9 105190761 105191085 -37080359 + AluSx SINE Alu 1 321 0 30 59 0 0 chr9 105191531 105191582 -37079862 + AT_rich Low_complexity Low_complexity 1 51 0 254 318 99 15 chr9 105191795 105191996 -37079448 - L1MC4a LINE L1 -1878 5930 5713 871 232 122 45 chr9 105192002 105192338 -37079106 + MLT1A1 LTR MaLR 4 365 0 2294 161 15 3 chr9 105192338 105192729 -37078715 + MLT1A1-int LTR MaLR 2 397 -1338 3663 28 4 2 chr9 105192737 105193197 -37078247 - L1PA4 LINE L1 -2454 3692 3232 13958 35 1 0 chr9 105193197 105195666 -37075778 + L1PA4 LINE L1 3690 6152 -3 4438 234 90 53 chr9 105195667 105196961 -37074483 + MLT1A1-int LTR MaLR 393 1735 0 1430 222 30 43 chr9 105196961 105197331 -37074113 + MLT1A1 LTR MaLR 1 365 0 24 32 0 0 chr9 105197514 105197545 -37073899 + AT_rich Low_complexity Low_complexity 1 31 0 1515 211 102 19 chr9 105197772 105198241 -37073203 + L1MA9 LINE L1 5767 6274 -38 22 80 0 0 chr9 105198273 105198323 -37073121 + AT_rich Low_complexity Low_complexity 1 50 0 198 128 0 0 chr9 105199276 105199315 -37072129 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr9 105200652 105200678 -37070766 + AT_rich Low_complexity Low_complexity 1 26 0 234 321 30 45 chr9 105201358 105201492 -37069952 - MIR SINE MIR 0 262 131 23 54 0 0 chr9 105201776 105201813 -37069631 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr9 105202129 105202159 -37069285 + AT_rich Low_complexity Low_complexity 1 30 0 37 23 0 0 chr9 105202204 105202248 -37069196 + AT_rich Low_complexity Low_complexity 1 44 0 260 299 0 0 chr9 105202641 105202718 -37068726 - MIR SINE MIR -81 181 105 484 266 33 16 chr9 105202769 105202953 -37068491 - HsTC2 DNA Tc2 0 1898 1712 528 208 42 8 chr9 105203039 105203159 -37068285 - MER41B LTR ERV1 -87 548 425 253 156 16 16 chr9 105203189 105203253 -37068191 + (TA)n Simple_repeat Simple_repeat 1 64 0 241 367 75 5 chr9 105203263 105203451 -37067993 - HsTC2 DNA Tc2 -1694 204 4 183 100 0 0 chr9 105203660 105203690 -37067754 + (T)n Simple_repeat Simple_repeat 1 30 0 2118 108 3 3 chr9 105203785 105204082 -37067362 + AluSg SINE Alu 1 297 -13 234 222 0 16 chr9 105204448 105204511 -37066933 - L1MCb LINE L1 -5415 630 569 689 306 108 36 chr9 105204614 105205114 -37066330 - L1MCb LINE L1 -5483 562 27 857 172 0 2 chr9 105205188 105205444 -37066000 - AluJb SINE Alu 0 312 1 1398 272 57 57 chr9 105206645 105208458 -37062986 - L1ME1 LINE L1 -268 5898 3881 225 368 38 0 chr9 105208486 105208619 -37062825 + L1M4 LINE L1 2606 2743 -3403 1056 242 83 50 chr9 105208670 105209066 -37062378 + LTR40b LTR ERVL 54 462 0 2605 311 59 62 chr9 105209067 105210689 -37060755 + HERVL40 LTR ERVL 1 1617 -3913 1557 288 11 25 chr9 105210693 105211137 -37060307 + HERVL40 LTR ERVL 2045 2482 -3048 4258 177 69 49 chr9 105211137 105212187 -37059257 + MER11C LTR ERVK 1 1071 0 495 335 12 0 chr9 105212187 105212348 -37059096 + HERVL40 LTR ERVL 2477 2639 -2891 186 256 163 12 chr9 105212847 105212933 -37058511 + L3 LINE CR1 366 464 -1113 26 88 0 0 chr9 105213724 105213792 -37057652 + AT_rich Low_complexity Low_complexity 1 68 0 275 207 17 0 chr9 105214806 105214864 -37056580 + Charlie5 DNA MER1_type 7 65 -2547 25 65 0 0 chr9 105215420 105215466 -37055978 + AT_rich Low_complexity Low_complexity 1 46 0 381 188 0 0 chr9 105216187 105216256 -37055188 + L1PA16 LINE L1 4034 4102 -2044 5237 190 42 31 chr9 105216256 105218343 -37053101 + L1PA16 LINE L1 4058 6166 0 371 312 132 11 chr9 105218916 105219105 -37052339 - MIR SINE MIR -49 213 2 210 185 0 19 chr9 105219215 105219269 -37052175 + A-rich Low_complexity Low_complexity 4 56 0 694 211 13 7 chr9 105220015 105220167 -37051277 - L1MA10 LINE L1 -7 6327 6175 874 237 41 38 chr9 105220168 105220459 -37050985 - L1ME1 LINE L1 -152 6014 5723 22 0 0 0 chr9 105220678 105220700 -37050744 + AT_rich Low_complexity Low_complexity 1 22 0 5119 171 26 1 chr9 105220803 105222136 -37049308 + L1MA4 LINE L1 4301 5664 -641 832 165 6 0 chr9 105222136 105222291 -37049153 + L1MA4 LINE L1 6126 6284 -16 31 82 0 0 chr9 105222295 105222368 -37049076 + AT_rich Low_complexity Low_complexity 1 73 0 239 236 0 56 chr9 105222558 105222630 -37048814 + CT-rich Low_complexity Low_complexity 3 70 0 1097 256 75 60 chr9 105222860 105223206 -37048238 + L1MC4 LINE L1 7160 7389 -419 5285 143 20 0 chr9 105223206 105224243 -37047201 + L1PA16 LINE L1 5104 6157 -9 1097 256 75 60 chr9 105224243 105224538 -37046906 + L1MC4 LINE L1 7389 7678 -130 5220 162 29 41 chr9 105227268 105228352 -37043092 - MER11C LTR ERVK 0 1071 1 2434 112 95 5 chr9 105228426 105228837 -37042607 - LTR7 LTR ERV1 -2 448 1 335 328 156 33 chr9 105229621 105230135 -37041309 + L2 LINE L2 2492 3061 -252 275 241 52 43 chr9 105230213 105230329 -37041115 - L1MC4 LINE L1 -15 8027 7911 596 251 98 15 chr9 105230580 105230783 -37040661 + MIR SINE MIR 18 237 -25 234 209 0 0 chr9 105230811 105230854 -37040590 + L2 LINE L2 3271 3313 0 695 361 16 10 chr9 105230955 105231265 -37040179 - MLT1J1 LTR MaLR -133 313 2 228 245 160 66 chr9 105231658 105231764 -37039680 + L2 LINE L2 1827 1942 -1372 8126 50 5 2 chr9 105233480 105235278 -37036166 - L1PA5 LINE L1 -6 6148 4347 23 54 0 0 chr9 105235284 105235321 -37036123 + AT_rich Low_complexity Low_complexity 1 37 0 235 319 99 0 chr9 105235548 105235639 -37035805 + MIR SINE MIR 98 197 -65 409 303 215 5 chr9 105235662 105235857 -37035587 - MIR SINE MIR -21 241 6 459 245 0 0 chr9 105235865 105235963 -37035481 + MER67D LTR ERV1 1 98 -416 868 198 35 50 chr9 105235995 105236197 -37035247 + MER67D LTR ERV1 237 435 -79 253 377 82 10 chr9 105236624 105236831 -37034613 + L2 LINE L2 1161 1382 -1932 312 331 187 33 chr9 105236947 105237434 -37034010 + L2 LINE L2 1754 2315 -999 1804 61 18 0 chr9 105237447 105237676 -37033768 - AluY SINE Alu -20 291 59 308 363 146 17 chr9 105237831 105238126 -37033318 - L3 LINE CR1 -385 1192 860 22 0 0 0 chr9 105238860 105238882 -37032562 + AT_rich Low_complexity Low_complexity 1 22 0 454 293 50 0 chr9 105239482 105239663 -37031781 - L1MEc LINE L1 -6161 235 46 894 292 52 55 chr9 105239691 105240420 -37031024 - L1MEc LINE L1 -3663 2552 1868 2094 205 11 9 chr9 105240436 105240894 -37030550 - L1MC1 LINE L1 0 6333 5875 740 240 15 5 chr9 105240912 105241116 -37030328 - L1MC1 LINE L1 -1038 5108 4903 233 234 143 26 chr9 105242120 105242197 -37029247 + MIR3 SINE MIR 92 177 -31 2042 135 0 0 chr9 105242960 105243263 -37028181 + AluSq SINE Alu 1 303 -10 255 270 90 20 chr9 105244172 105244272 -37027172 - HAL1b LINE L1 -976 372 266 320 282 171 12 chr9 105244769 105244939 -37026505 - L1MC4 LINE L1 -1396 6646 6450 213 39 0 0 chr9 105245083 105245109 -37026335 + (TTCTCC)n Simple_repeat Simple_repeat 3 28 0 1932 135 0 0 chr9 105245109 105245383 -37026061 - AluSc SINE Alu -28 281 8 206 207 35 17 chr9 105246457 105246515 -37024929 + GA-rich Low_complexity Low_complexity 2 60 0 297 330 159 9 chr9 105248319 105248646 -37022798 - L3 LINE CR1 -73 1504 1129 226 309 11 11 chr9 105250478 105250572 -37020872 + CT-rich Low_complexity Low_complexity 3 96 0 22 35 0 0 chr9 105250758 105250787 -37020657 + AT_rich Low_complexity Low_complexity 1 29 0 1804 91 0 107 chr9 105250953 105251271 -37020173 + AluSc SINE Alu 1 284 -25 2224 78 0 0 chr9 105251271 105251591 -37019853 + AluY SINE Alu 1 320 0 184 413 25 0 chr9 105251984 105252064 -37019380 + L2 LINE L2 3171 3252 -61 233 328 109 25 chr9 105253056 105253122 -37018322 + MIR3 SINE MIR 31 90 -118 1827 250 26 16 chr9 105253122 105253622 -37017822 + MLT1D LTR MaLR 1 505 0 233 328 109 25 chr9 105253622 105253674 -37017770 + MIR3 SINE MIR 90 159 -49 1478 140 7 39 chr9 105253798 105254224 -37017220 + MER4C LTR ERV1 1 465 0 1297 216 97 55 chr9 105254263 105254643 -37016801 + MSTD LTR MaLR 1 396 0 2119 103 0 0 chr9 105255972 105256310 -37015134 + AluY SINE Alu 1 338 0 215 257 0 81 chr9 105256330 105256404 -37015040 - L2 LINE L2 -1 3271 3204 816 174 24 52 chr9 105256488 105256701 -37014743 - L1MA8 LINE L1 -141 6150 5944 407 126 99 63 chr9 105256698 105256809 -37014635 + L1MA8 LINE L1 6148 6262 -29 * 256 200 31 0 chr9 105256819 105256884 -37014560 + L1MA8 LINE L1 6222 6288 -3 328 319 35 9 chr9 105257018 105257131 -37014313 - L1MEc LINE L1 -4376 2746 2631 275 293 130 54 chr9 105257206 105257535 -37013909 - L1MEc LINE L1 -4758 2183 1804 1369 139 8 4 chr9 105257535 105257772 -37013672 - L1MA4 LINE L1 -5 6295 6058 275 293 130 54 chr9 105257772 105257926 -37013518 - L1MEc LINE L1 -5137 1804 1663 1060 281 55 25 chr9 105258120 105258522 -37012922 - L1MEc LINE L1 -5178 1245 832 330 318 63 35 chr9 105258572 105259219 -37012225 - L1MEc LINE L1 -5432 991 30 501 297 97 31 chr9 105259388 105259748 -37011696 + L1MC4a LINE L1 5603 5986 -1822 33 25 0 0 chr9 105259870 105259910 -37011534 + AT_rich Low_complexity Low_complexity 1 40 0 884 243 49 8 chr9 105259964 105260227 -37011217 + L1ME2 LINE L1 5694 5967 -197 708 105 0 0 chr9 105260587 105260692 -37010752 + AluY SINE Alu 205 309 -2 3300 195 13 20 chr9 105261057 105261532 -37009912 - L1MC1 LINE L1 -11 6602 6132 2063 101 3 10 chr9 105261532 105261828 -37009616 + AluSq SINE Alu 1 294 -19 3300 195 13 20 chr9 105261828 105262064 -37009380 - L1MC1 LINE L1 -481 6132 5896 231 260 0 0 chr9 105262066 105262116 -37009328 + LTR30 LTR ERV1 3 52 -670 2539 132 109 5 chr9 105262116 105262688 -37008756 + LTR12 LTR ERV1 57 2218 -220 2797 249 40 28 chr9 105262690 105263841 -37007603 - L1MC1 LINE L1 -715 5898 4610 6855 215 40 16 chr9 105263846 105265538 -37005906 - L1MC1 LINE L1 -3043 3383 1733 1862 147 3 0 chr9 105265538 105265823 -37005621 - AluSx SINE Alu -9 303 18 204 40 0 0 chr9 105265829 105265854 -37005590 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6855 215 40 16 chr9 105265854 105266868 -37004576 - L1MC1 LINE L1 -4697 1729 353 261 0 0 0 chr9 105266868 105266897 -37004547 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 6855 215 40 16 chr9 105266897 105267239 -37004205 - L1MC1 LINE L1 -6073 353 21 301 243 65 56 chr9 105267782 105267889 -37003555 + MLT1D LTR MaLR 1 95 -410 1542 256 66 2 chr9 105267925 105268320 -37003124 + MLT1D LTR MaLR 82 501 -4 594 270 102 9 chr9 105268708 105268923 -37002521 - LTR33A LTR ERVL -2 521 287 288 0 0 0 chr9 105269221 105269253 -37002191 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr9 105270271 105270300 -37001144 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr9 105271921 105271950 -36999494 + AT_rich Low_complexity Low_complexity 1 29 0 372 240 100 40 chr9 105272129 105272279 -36999165 + MER97b DNA MER1_type? 21 179 -874 5153 180 57 29 chr9 105272372 105273910 -36997534 - L1MA8 LINE L1 -5 6286 4696 4254 174 47 9 chr9 105273905 105274760 -36996684 - L1PB4 LINE L1 0 6156 5270 * 1069 169 9 31 chr9 105274764 105274989 -36996455 - L1MA8 LINE L1 -1437 4709 4490 830 160 115 0 chr9 105274992 105275148 -36996296 - FRAM SINE Alu -3 173 1 240 28 0 0 chr9 105275148 105275184 -36996260 - L1MA8 LINE L1 -1655 4491 4456 7959 170 11 24 chr9 105276062 105277907 -36993537 - L1MA2 LINE L1 0 6304 4507 1992 133 6 28 chr9 105277907 105278224 -36993220 - AluSx SINE Alu -1 311 2 7959 170 11 24 chr9 105278224 105279104 -36992340 - L1MA2 LINE L1 -1797 4507 3617 4132 186 41 5 chr9 105279223 105280020 -36991424 + LTR1B LTR ERV1 1 826 0 1589 226 42 21 chr9 105280438 105280863 -36990581 + MLT1C LTR MaLR 34 467 0 21 0 0 0 chr9 105281177 105281198 -36990246 + AT_rich Low_complexity Low_complexity 1 21 0 217 364 99 16 chr9 105281325 105281446 -36989998 + L2 LINE L2 3182 3312 -1 499 150 0 0 chr9 105282293 105282373 -36989071 - MADE1 DNA Mariner 0 80 1 766 155 0 8 chr9 105282497 105282626 -36988818 - AluSg/x SINE Alu -14 296 169 3585 227 124 42 chr9 105284197 105285595 -36985849 + L1MCa LINE L1 19 1532 -4894 1664 261 82 17 chr9 105285620 105286600 -36984844 + L1MCa LINE L1 2054 3097 -3329 180 111 0 0 chr9 105287302 105287329 -36984115 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 676 202 59 31 chr9 105288059 105288258 -36983186 - L1MA8 LINE L1 -55 6257 6047 226 150 83 0 chr9 105288252 105288312 -36983132 + L1MA8 LINE L1 6221 6285 -6 * 812 141 15 0 chr9 105288416 105288551 -36982893 + L1MA3 LINE L1 6141 6277 -28 197 167 42 0 chr9 105288551 105288599 -36982845 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 337 311 0 0 chr9 105288602 105288692 -36982752 + L1MC4 LINE L1 6614 6703 -1339 * 357 289 0 0 chr9 105288626 105288716 -36982728 - L1MC4 LINE L1 -1339 6703 6614 387 335 6 29 chr9 105288800 105288970 -36982474 - MIR3 SINE MIR -7 201 36 764 246 66 28 chr9 105288992 105289146 -36982298 - MER20 DNA MER1_type 0 219 53 1909 112 71 9 chr9 105289146 105289486 -36981958 + L1PA11 LINE L1 5812 6172 -2 764 246 66 28 chr9 105289486 105289542 -36981902 - MER20 DNA MER1_type -166 53 1 193 196 20 20 chr9 105289679 105289730 -36981714 - L3b LINE CR1 -196 1387 1337 32 67 0 0 chr9 105290088 105290148 -36981296 + AT_rich Low_complexity Low_complexity 1 60 0 27 49 0 0 chr9 105290845 105290886 -36980558 + AT_rich Low_complexity Low_complexity 1 41 0 228 206 111 63 chr9 105290900 105291026 -36980418 + L1MD3 LINE L1 6983 7114 -881 329 196 31 103 chr9 105291035 105291132 -36980312 + MLT1F1 LTR MaLR 45 134 -433 2273 195 43 22 chr9 105291132 105291639 -36979805 + L1MD3 LINE L1 7419 7936 -59 653 271 71 4 chr9 105291633 105291913 -36979531 - L1MEc LINE L1 -3446 2769 2471 * 7679 24 0 1 chr9 105291918 105293387 -36978057 - L1PA3 LINE L1 0 6155 4688 4204 22 0 0 chr9 105293387 105293888 -36977556 + L1PA3 LINE L1 4213 4713 -1433 275 125 0 47 chr9 105293891 105293955 -36977489 + (T)n Simple_repeat Simple_repeat 1 61 0 3791 5 2 0 chr9 105294066 105294493 -36976951 - L1PA2 LINE L1 -124 6031 5604 * 7763 29 0 0 chr9 105294491 105295425 -36976019 + L1P LINE L1 4438 5371 -775 457 202 9 0 chr9 105295435 105295544 -36975900 - L1MEc LINE L1 -3734 2481 2372 714 287 73 5 chr9 105295573 105295970 -36975474 - L1MEc LINE L1 -4125 2271 1848 1038 179 24 24 chr9 105295999 105296206 -36975238 - AluJo SINE Alu -59 253 47 364 291 66 0 chr9 105296221 105296372 -36975072 - L1MEc LINE L1 -4598 1798 1638 239 258 0 10 chr9 105297619 105297716 -36973728 + CT-rich Low_complexity Low_complexity 2 97 0 5151 95 36 0 chr9 105297739 105298442 -36973002 + MER11D LTR ERVK 170 897 0 367 291 160 34 chr9 105298701 105298907 -36972537 + MIR SINE MIR 30 261 -1 532 239 28 14 chr9 105299034 105299176 -36972268 - LTR40b LTR ERVL 0 462 319 749 368 116 29 chr9 105300886 105301603 -36969841 - L1M4 LINE L1 -869 5277 4499 275 278 114 18 chr9 105301634 105301861 -36969583 - L1MEc LINE L1 -3753 2653 2405 2367 35 0 3 chr9 105301871 105302160 -36969284 - L1PA4 LINE L1 -3 6152 5865 229 306 57 26 chr9 105302209 105302438 -36969006 - L1MEc LINE L1 -4164 2423 2188 270 272 61 9 chr9 105302603 105302717 -36968727 - L1MEc LINE L1 -5510 899 780 2852 86 6 8 chr9 105302853 105303074 -36968370 + L1PA7 LINE L1 5272 5492 -662 2099 101 0 19 chr9 105303074 105303381 -36968063 + AluY SINE Alu 4 304 -7 2852 86 6 8 chr9 105303381 105303939 -36967505 + L1PA7 LINE L1 5492 6152 -2 294 29 0 0 chr9 105305522 105305557 -36965887 + (TG)n Simple_repeat Simple_repeat 1 35 0 5432 28 0 2 chr9 105306592 105307232 -36964212 - L1PA3 LINE L1 -3 6152 5514 317 341 32 16 chr9 105307439 105307562 -36963882 - MIR SINE MIR -129 133 9 201 39 0 0 chr9 105308428 105308454 -36962990 + (TG)n Simple_repeat Simple_repeat 1 26 0 2683 72 16 112 chr9 105308454 105308900 -36962544 - MLT2A1 LTR ERVL -41 403 1 817 116 0 0 chr9 105308900 105309021 -36962423 - HERVL-A1-A1 LTR ERVL 0 5654 5534 37487 88 19 9 chr9 105309121 105314224 -36957220 - HERVL-A1-A1 LTR ERVL -502 5152 1 2882 101 45 7 chr9 105314224 105314264 -36957180 - MLT2A1 LTR ERVL 0 444 407 537 16 0 0 chr9 105314264 105314326 -36957118 + (TA)n Simple_repeat Simple_repeat 2 63 0 2882 101 45 7 chr9 105314326 105314711 -36956733 - MLT2A1 LTR ERVL -37 407 3 1266 128 31 3 chr9 105315060 105315294 -36956150 + L1PA11 LINE L1 5590 5830 -338 27353 141 18 72 chr9 105315312 105318826 -36952618 + L1P LINE L1 12 3107 -3039 261 0 0 0 chr9 105318826 105318855 -36952589 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 27353 141 18 72 chr9 105318855 105320962 -36950482 + L1P LINE L1 3107 5327 -819 648 108 0 0 chr9 105322380 105322473 -36948971 + L1PA11 LINE L1 6072 6164 -10 482 281 0 0 chr9 105322599 105322720 -36948724 + MER63A DNA MER1_type 90 210 0 364 266 120 32 chr9 105323175 105323333 -36948111 - L1MC4 LINE L1 -1339 6703 6532 438 212 179 0 chr9 105325276 105325427 -36946017 - MER53 DNA DNA -11 178 1 412 292 38 91 chr9 105325758 105325967 -36945477 + MIR SINE MIR 49 246 -16 1313 199 51 51 chr9 105326107 105326500 -36944944 + L1MC3 LINE L1 6538 6930 -855 692 203 0 30 chr9 105326508 105326641 -36944803 + FLAM_C SINE Alu 3 131 -12 2846 236 74 4 chr9 105326641 105327443 -36944001 + L1MC3 LINE L1 6928 7785 0 274 278 28 19 chr9 105327836 105327944 -36943500 - L1P4 LINE L1 -620 5546 5438 564 15 0 0 chr9 105328431 105328496 -36942948 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 2073 95 15 4 chr9 105329058 105329332 -36942112 + AluSq SINE Alu 3 279 -34 189 0 0 0 chr9 105329338 105329359 -36942085 + (TAA)n Simple_repeat Simple_repeat 2 22 0 239 226 19 0 chr9 105330643 105330696 -36940748 + (CA)n Simple_repeat Simple_repeat 1 54 0 * 244 235 0 82 chr9 105330665 105330700 -36940744 + L1MC4 LINE L1 6614 6650 -1392 13227 161 19 16 chr9 105330700 105333109 -36938335 + Tigger1 DNA MER2_type 1 2418 0 207 0 0 0 chr9 105333111 105333134 -36938310 + (CA)n Simple_repeat Simple_repeat 2 24 0 244 235 0 82 chr9 105333134 105333193 -36938251 + L1MC4 LINE L1 6651 6703 -1339 435 63 0 63 chr9 105333194 105333289 -36938155 + (TA)n Simple_repeat Simple_repeat 1 89 0 1031 240 26 40 chr9 105333445 105333749 -36937695 + MLT1A1 LTR MaLR 1 300 -65 2169 115 3 20 chr9 105335927 105336283 -36935161 - L1PA13 LINE L1 0 6163 5814 635 151 20 41 chr9 105336283 105336420 -36935024 - L1PA5 LINE L1 -1 6153 6011 48 60 0 0 chr9 105336451 105336534 -36934910 + AT_rich Low_complexity Low_complexity 1 83 0 216 261 17 50 chr9 105336578 105336697 -36934747 + CT-rich Low_complexity Low_complexity 3 117 0 1311 239 67 0 chr9 105336863 105337177 -36934267 - L1PA15 LINE L1 -3 6162 5828 886 203 50 10 chr9 105337153 105337355 -36934089 + L1PA16 LINE L1 5664 5873 -293 * 1826 166 0 3 chr9 105338556 105338845 -36932599 + AluSx SINE Alu 1 288 -24 233 197 0 132 chr9 105338860 105338936 -36932508 + L1P5 LINE L1 5808 5873 -283 529 180 0 82 chr9 105339271 105339393 -36932051 + MLT1B LTR MaLR 2 113 -277 2772 98 39 5 chr9 105339575 105339964 -36931480 - MLT2A1 LTR ERVL -40 404 3 1140 238 32 7 chr9 105339967 105340244 -36931200 + MLT1B LTR MaLR 107 390 0 3045 206 80 1 chr9 105340547 105341198 -36930246 - MER44D DNA MER2_type 0 705 4 421 242 163 33 chr9 105342648 105342801 -36928643 - MER5B DNA MER1_type -3 175 3 333 150 17 17 chr9 105343060 105343120 -36928324 + Charlie5 DNA MER1_type 5 64 -2548 310 146 18 18 chr9 105343200 105343255 -36928189 + Alu SINE Alu 248 302 -6 375 314 73 11 chr9 105343393 105343584 -36927860 - L2 LINE L2 -25 3288 3086 189 244 81 23 chr9 105343969 105344055 -36927389 - MIR3 SINE MIR -36 172 82 221 259 68 61 chr9 105344774 105344921 -36926523 - L2 LINE L2 -1216 2098 1951 194 289 12 48 chr9 105346404 105346487 -36924957 + L2 LINE L2 3178 3257 -15 812 53 0 0 chr9 105346496 105346590 -36924854 + AluSg/x SINE Alu 195 288 -24 423 0 0 0 chr9 105346601 105346648 -36924796 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 2773 59 20 2 chr9 105346896 105347434 -36924010 - L1P2 LINE L1 -535 5619 5071 3667 45 0 0 chr9 105347434 105347875 -36923569 + L1PA5 LINE L1 5707 6154 0 306 262 178 0 chr9 105348106 105348213 -36923231 - L2 LINE L2 -595 2719 2594 217 288 0 0 chr9 105348571 105348630 -36922814 + MIR SINE MIR 173 231 -31 264 328 0 72 chr9 105349382 105349507 -36921937 - L2 LINE L2 0 3272 3157 467 226 179 12 chr9 105349517 105349685 -36921759 - MER5C DNA MER1_type -1 323 128 3527 114 13 2 chr9 105349789 105350325 -36921119 + L1PA14 LINE L1 5618 6159 -2 24 0 0 0 chr9 105350494 105350518 -36920926 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr9 105351818 105351858 -36919586 + AT_rich Low_complexity Low_complexity 1 40 0 998 158 6 0 chr9 105351861 105352026 -36919418 - AluSx SINE Alu -22 290 125 6652 74 21 2 chr9 105352036 105353213 -36918231 - L1PA7 LINE L1 -13 6141 4962 2010 75 0 0 chr9 105353213 105353479 -36917965 + L1PA7 LINE L1 4702 4967 -1179 1046 110 0 0 chr9 105353479 105353615 -36917829 - AluSx SINE Alu -176 136 1 533 248 0 8 chr9 105353861 105353982 -36917462 - MER5C DNA MER1_type -204 120 1 246 160 0 0 chr9 105354889 105354939 -36916505 + (TA)n Simple_repeat Simple_repeat 1 50 0 362 176 0 22 chr9 105355749 105355840 -36915604 + (TATG)n Simple_repeat Simple_repeat 2 90 0 1414 306 37 16 chr9 105355888 105356397 -36915047 + L2 LINE L2 2006 2525 -789 744 290 34 58 chr9 105357386 105357893 -36913551 + L2 LINE L2 2749 3239 -74 414 350 21 0 chr9 105358165 105358308 -36913136 - HERV16 LTR ERVL -3174 1822 1677 2235 341 55 36 chr9 105358400 105359714 -36911730 - HERV16 LTR ERVL -3465 1531 193 836 336 60 39 chr9 105359898 105360332 -36911112 - LTR16A LTR ERVL 0 450 8 192 152 0 0 chr9 105360798 105360831 -36910613 + (TA)n Simple_repeat Simple_repeat 2 34 0 878 229 13 25 chr9 105361522 105361747 -36909697 - L1M LINE L1 -830 5316 5101 244 289 21 99 chr9 105362420 105362562 -36908882 + MIR3 SINE MIR 59 189 -19 327 290 24 16 chr9 105363283 105363407 -36908037 - MIR3 SINE MIR 0 208 84 23 78 0 0 chr9 105364162 105364213 -36907231 + AT_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr9 105364581 105364615 -36906829 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr9 105365221 105365244 -36906200 + AT_rich Low_complexity Low_complexity 1 23 0 250 288 76 8 chr9 105365640 105365772 -36905672 - MER20B DNA MER1_type -453 330 190 618 270 86 83 chr9 105365873 105366235 -36905209 - MLT1H LTR MaLR -19 530 165 1645 157 76 31 chr9 105366235 105366591 -36904853 - THE1C LTR MaLR -3 372 1 618 270 86 83 chr9 105366591 105366624 -36904820 - MLT1H LTR MaLR -384 165 134 259 273 254 6 chr9 105366743 105367073 -36904371 - L1M4 LINE L1 -1886 4260 3849 2505 237 68 5 chr9 105367100 105367669 -36903775 + MER77 LTR ERV1 1 605 0 603 304 103 29 chr9 105367670 105368669 -36902775 - L1M4 LINE L1 -2352 3794 2722 418 361 24 0 chr9 105370530 105370699 -36900745 + L2 LINE L2 2627 2799 -515 300 119 0 119 chr9 105372242 105372309 -36899135 - L1MC4 LINE L1 -1340 6702 6644 425 298 5 52 chr9 105374798 105374989 -36896455 - MER20B DNA MER1_type 0 219 38 1894 131 4 0 chr9 105375641 105375909 -36895535 - AluSx SINE Alu -43 269 1 221 387 0 0 chr9 105377189 105377264 -36894180 + L3 LINE CR1 1502 1576 -1 390 21 0 0 chr9 105377803 105377850 -36893594 + (CA)n Simple_repeat Simple_repeat 2 48 0 3296 179 51 90 chr9 105378098 105378434 -36893010 - L1MB3 LINE L1 -62 6121 5774 324 70 0 0 chr9 105378434 105378477 -36892967 + (TG)n Simple_repeat Simple_repeat 2 44 0 3296 179 51 90 chr9 105378477 105379376 -36892068 - L1MB3 LINE L1 -409 5774 4903 1259 220 36 27 chr9 105379533 105379865 -36891579 + L1MA7 LINE L1 5782 6116 -175 * 2136 230 68 23 chr9 105379835 105380686 -36890758 - L1MB3 LINE L1 -1291 4855 3791 4055 163 25 14 chr9 105380719 105381560 -36889884 - L1MA4 LINE L1 -9 6291 5442 3228 200 88 32 chr9 105381734 105382440 -36889004 + L1MD1 LINE L1 5179 5957 -285 1475 171 20 36 chr9 105382440 105382745 -36888699 + AluJo SINE Alu 1 300 -12 3228 200 88 32 chr9 105382745 105383048 -36888396 + L1MD1 LINE L1 5957 6241 -1 280 2 27 2 chr9 105383185 105383265 -36888179 + L1PA3 LINE L1 6104 6183 0 842 156 144 6 chr9 105383561 105383734 -36887710 - MSTA LTR MaLR -231 197 1 11848 202 33 33 chr9 105383734 105387164 -36884280 + L1M2 LINE L1 2338 5776 -524 1132 189 42 13 chr9 105387160 105387398 -36884046 + L1MA6 LINE L1 5594 5838 -462 * 511 314 75 23 chr9 105387399 105387717 -36883727 - MLT1F1 LTR MaLR -227 366 27 55 56 0 0 chr9 105388369 105388459 -36882985 + AT_rich Low_complexity Low_complexity 1 90 0 186 167 0 0 chr9 105389185 105389221 -36882223 + (TA)n Simple_repeat Simple_repeat 2 37 0 454 218 21 70 chr9 105389221 105389363 -36882081 - L1MB5 LINE L1 -9 6165 6031 263 257 14 0 chr9 105389888 105389958 -36881486 + (CATA)n Simple_repeat Simple_repeat 1 71 0 3426 235 38 22 chr9 105389972 105390639 -36880805 - L1MB5 LINE L1 -9 6165 5458 1923 150 0 0 chr9 105390639 105390933 -36880511 - AluSx SINE Alu -14 298 5 3426 235 38 22 chr9 105390933 105391511 -36879933 - L1MB5 LINE L1 -716 5458 4891 329 107 0 0 chr9 105391513 105391569 -36879875 - L1PB4 LINE L1 0 6156 6101 630 133 24 84 chr9 105391644 105391810 -36879634 - L1MA8 LINE L1 -1 6290 6135 1900 166 11 3 chr9 105391812 105392161 -36879283 - L1MA8 LINE L1 -622 5690 5339 1231 289 62 35 chr9 105393008 105393555 -36877889 - MLT1E2 LTR MaLR 0 626 65 394 335 21 5 chr9 105393723 105393914 -36877530 - L1ME LINE L1 -577 5585 5392 291 140 0 0 chr9 105395289 105395339 -36876105 + (A)n Simple_repeat Simple_repeat 1 50 0 435 19 0 0 chr9 105395734 105395786 -36875658 + (CA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr9 105396157 105396181 -36875263 + AT_rich Low_complexity Low_complexity 1 24 0 4817 96 18 3 chr9 105396541 105397219 -36874225 + LTR12 LTR ERV1 1 688 0 8183 65 8 9 chr9 105397482 105398555 -36872889 + MER11C LTR ERVK 1 1071 0 369 225 119 38 chr9 105399069 105399229 -36872215 - MLT1C LTR MaLR -183 284 112 2186 211 26 19 chr9 105399321 105399857 -36871587 - MER34 LTR ERV1 0 542 3 21 36 0 0 chr9 105400746 105400774 -36870670 + AT_rich Low_complexity Low_complexity 1 28 0 997 218 105 91 chr9 105401564 105401945 -36869499 + MLT2D LTR ERVL 1 390 -24 318 67 0 0 chr9 105401945 105401990 -36869454 + (CA)n Simple_repeat Simple_repeat 1 45 0 997 218 105 91 chr9 105401990 105402016 -36869428 + MLT2D LTR ERVL 390 414 0 577 341 39 16 chr9 105402164 105402296 -36869148 - MIR SINE MIR 0 262 135 1624 118 0 9 chr9 105402296 105402524 -36868920 + AluSg/x SINE Alu 70 295 -17 577 341 39 16 chr9 105402524 105402646 -36868798 - MIR SINE MIR -127 135 2 10350 146 20 67 chr9 105404684 105407203 -36864241 + L1P3 LINE L1 5 2503 -3958 10414 113 3 3 chr9 105407205 105408757 -36862687 - L1PA7 LINE L1 -796 5350 3800 5838 81 0 1 chr9 105408757 105409526 -36861918 + L1PA7 LINE L1 5377 6151 -3 13749 123 22 3 chr9 105409527 105411689 -36859755 + L1P3 LINE L1 2487 4688 -1773 3665 234 55 16 chr9 105411824 105413841 -36857603 + L1MB5 LINE L1 3985 6073 -101 303 348 47 26 chr9 105413876 105414109 -36857335 + L1M4 LINE L1 4794 5031 -1115 27 62 0 0 chr9 105414218 105414266 -36857178 + AT_rich Low_complexity Low_complexity 1 48 0 321 214 5 10 chr9 105414352 105414544 -36856900 + AluJo SINE Alu 1 284 -18 216 0 0 0 chr9 105414552 105414576 -36856868 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 227 285 47 93 chr9 105414676 105414869 -36856575 - L2 LINE L2 -69 3244 3061 947 234 5 0 chr9 105414988 105415189 -36856255 + MER105 DNA DNA 1 202 -2 31 82 0 0 chr9 105415698 105415771 -36855673 + AT_rich Low_complexity Low_complexity 1 73 0 21 36 0 0 chr9 105416290 105416318 -36855126 + AT_rich Low_complexity Low_complexity 1 28 0 6504 111 6 2 chr9 105416338 105416476 -36854968 - L1PA8 LINE L1 -2 6170 6034 2051 98 0 0 chr9 105416476 105416751 -36854693 - AluY SINE Alu -7 304 30 6504 111 6 2 chr9 105416751 105418417 -36853027 - L1PA8 LINE L1 -138 6034 4397 781 226 6 44 chr9 105418571 105418752 -36852692 + AluJo SINE Alu 93 266 -46 261 0 0 0 chr9 105418764 105418793 -36852651 + (TAA)n Simple_repeat Simple_repeat 2 30 0 449 222 71 16 chr9 105418793 105418919 -36852525 - MER5A DNA MER1_type -56 133 1 2269 169 58 37 chr9 105419516 105420031 -36851413 - L1MA9 LINE L1 0 6312 5787 232 133 33 0 chr9 105420048 105420108 -36851336 + (TG)n Simple_repeat Simple_repeat 1 62 0 2448 185 2 32 chr9 105420134 105420627 -36850817 - L1MA9 LINE L1 -532 5780 5303 259 292 0 0 chr9 105420723 105420812 -36850632 + (TA)n Simple_repeat Simple_repeat 1 89 0 460 309 86 6 chr9 105421086 105421261 -36850183 - MIR SINE MIR 0 262 74 453 90 0 0 chr9 105421269 105421336 -36850108 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1899 95 46 21 chr9 105421348 105421633 -36849811 - AluSc SINE Alu -17 292 1 879 146 6 32 chr9 105422180 105422338 -36849106 + L1MA1 LINE L1 6119 6272 -30 26 0 0 0 chr9 105422520 105422546 -36848898 + AT_rich Low_complexity Low_complexity 1 26 0 2545 234 29 8 chr9 105422587 105423249 -36848195 - L1MA9 LINE L1 -836 5310 4635 891 209 0 11 chr9 105423388 105423565 -36847879 + FAM SINE Alu 1 175 0 2177 117 10 0 chr9 105423934 105424242 -36847202 - AluY SINE Alu 0 311 1 28 0 0 0 chr9 105424382 105424410 -36847034 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chr9 105424501 105424525 -36846919 + (TA)n Simple_repeat Simple_repeat 2 25 0 408 308 8 0 chr9 105424535 105424668 -36846776 - MIR SINE MIR 0 262 129 1552 261 47 23 chr9 105425650 105426178 -36845266 + MLT1F LTR MaLR 1 541 -1 249 266 28 63 chr9 105426185 105426328 -36845116 + MLT1F-int LTR MaLR 7 144 -1227 3719 138 52 6 chr9 105426390 105427047 -36844397 + L1PA16 LINE L1 5480 6166 0 312 273 112 37 chr9 105427167 105427328 -36844116 + MLT1F-int LTR MaLR 439 611 -760 255 296 68 99 chr9 105427845 105428200 -36843244 + MLT1F-int LTR MaLR 1023 1366 -5 1539 291 43 7 chr9 105428213 105428636 -36842808 + MLT1F LTR MaLR 9 446 -96 22 0 0 0 chr9 105428811 105428833 -36842611 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr9 105429020 105429061 -36842383 + AT_rich Low_complexity Low_complexity 1 41 0 1247 262 53 82 chr9 105429451 105429974 -36841470 + LTR40a LTR ERVL 8 515 -4 276 0 0 0 chr9 105429977 105430013 -36841431 - L1PA3 LINE L1 -5 6150 6115 21 57 0 0 chr9 105430336 105430371 -36841073 + AT_rich Low_complexity Low_complexity 1 35 0 591 317 116 52 chr9 105430721 105431241 -36840203 - L2 LINE L2 0 3313 2723 1010 101 25 0 chr9 105431241 105431400 -36840044 - L1MA4A LINE L1 -6 6297 6135 591 317 116 52 chr9 105431400 105431632 -36839812 - L2 LINE L2 -590 2723 2507 287 313 12 0 chr9 105432726 105432809 -36838635 - L2 LINE L2 -17 3296 3213 428 298 21 107 chr9 105432854 105433096 -36838348 - LTR16C LTR ERVL -212 279 59 975 220 72 62 chr9 105433296 105433714 -36837730 - MER31B-int LTR ERV1 -2814 2122 1701 30 59 0 0 chr9 105433757 105433808 -36837636 + AT_rich Low_complexity Low_complexity 1 51 0 1249 248 38 45 chr9 105433843 105434263 -36837181 - MER31B-int LTR ERV1 -4206 730 314 838 267 81 23 chr9 105434435 105434780 -36836664 - MLT1A1 LTR MaLR 0 365 1 294 282 0 0 chr9 105434783 105434854 -36836590 - MER31B-int LTR ERV1 -4856 80 10 491 245 69 37 chr9 105434898 105435086 -36836358 - MER31B LTR ERV1 0 466 273 1172 307 89 14 chr9 105435211 105435703 -36835741 + L2 LINE L2 2166 2694 -620 1200 194 4 0 chr9 105435710 105435942 -36835502 + L1MA6 LINE L1 6068 6300 0 294 376 107 35 chr9 105435947 105436497 -36834947 + L2 LINE L2 2697 3312 -1 671 178 20 7 chr9 105437380 105437532 -36833912 + L1MA9 LINE L1 6159 6312 0 24 67 0 0 chr9 105438251 105438296 -36833148 + AT_rich Low_complexity Low_complexity 1 45 0 543 221 69 14 chr9 105438504 105438649 -36832795 + L1MDa LINE L1 2107 2259 -4281 401 284 64 61 chr9 105438821 105439148 -36832296 - L1M4 LINE L1 -587 5591 5260 392 248 64 57 chr9 105439188 105439391 -36832053 - MLT1F1 LTR MaLR -356 186 1 23 33 0 0 chr9 105439892 105439922 -36831522 + AT_rich Low_complexity Low_complexity 1 30 0 263 240 25 8 chr9 105440465 105440586 -36830858 + (TA)n Simple_repeat Simple_repeat 2 124 0 2783 110 30 2 chr9 105440677 105441012 -36830432 - L1PA13 LINE L1 -1 6162 5811 236 30 30 0 chr9 105441012 105441045 -36830399 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2783 110 30 2 chr9 105441045 105441138 -36830306 - L1PA13 LINE L1 -352 5811 5722 565 189 137 16 chr9 105441788 105441892 -36829552 + L1MDa LINE L1 2319 2409 -4131 8125 70 6 8 chr9 105441892 105442966 -36828478 - MER11C LTR ERVK 0 1071 1 565 189 137 16 chr9 105442966 105443051 -36828393 + L1MDa LINE L1 2409 2531 -4009 28 29 0 0 chr9 105443208 105443243 -36828201 + AT_rich Low_complexity Low_complexity 1 35 0 221 175 0 0 chr9 105443596 105443636 -36827808 + A-rich Low_complexity Low_complexity 1 40 0 320 180 0 0 chr9 105443689 105443788 -36827656 + AluJ/FRAM SINE Alu 232 330 0 706 130 46 0 chr9 105445795 105445926 -36825518 - L1MA7 LINE L1 0 6495 6359 1177 184 29 17 chr9 105445927 105446406 -36825038 - L1MA7 LINE L1 -244 6251 5599 1249 193 75 19 chr9 105446491 105446864 -36824580 - L1MA7 LINE L1 -745 5605 5212 996 188 0 0 chr9 105446865 105447035 -36824409 - AluJb SINE Alu -9 303 134 1455 226 3 3 chr9 105447035 105447327 -36824117 - AluJb SINE Alu -16 296 5 1068 231 68 12 chr9 105447334 105447655 -36823789 - L1MA7 LINE L1 -1135 5215 4877 891 168 41 5 chr9 105447625 105447822 -36823622 - L1MA7 LINE L1 -2552 3798 3595 * 6862 205 69 26 chr9 105447822 105449334 -36822110 - MER52A LTR ERV1 0 1755 179 419 217 43 22 chr9 105449379 105449517 -36821927 - L1MA7 LINE L1 -2750 3600 3460 181 254 15 30 chr9 105450338 105450405 -36821039 - MIR SINE MIR -12 250 185 790 185 21 42 chr9 105450805 105450932 -36820512 + MER3 DNA MER1_type 17 140 -69 6565 87 22 1 chr9 105450932 105452414 -36819030 - L1PA7 LINE L1 0 6154 4656 790 185 21 42 chr9 105452414 105452475 -36818969 + MER3 DNA MER1_type 140 201 -8 350 286 31 73 chr9 105452657 105453041 -36818403 - L1MC5 LINE L1 -183 7778 7411 333 291 67 59 chr9 105453092 105453463 -36817981 - L1MC5 LINE L1 -575 7386 7013 1326 233 111 5 chr9 105453729 105454136 -36817308 - L1 LINE L1 -893 6672 6223 3184 258 90 3 chr9 105454149 105455046 -36816398 - L1 LINE L1 -6579 986 12 386 165 38 0 chr9 105455047 105455126 -36816318 - L1 LINE L1 -2378 3768 3687 184 396 28 9 chr9 105455544 105455650 -36815794 + MIR SINE MIR 26 133 -129 394 299 132 52 chr9 105455788 105456113 -36815331 + MLT1J LTR MaLR 7 357 -154 388 276 32 8 chr9 105456243 105456366 -36815078 + MIR SINE MIR 91 216 -46 692 250 26 61 chr9 105456367 105456595 -36814849 + MER58A DNA MER1_type 2 221 -3 2404 230 28 35 chr9 105456786 105456881 -36814563 - L1MA7 LINE L1 -3172 3178 3084 3286 65 0 9 chr9 105456881 105457324 -36814120 - L1PA7 LINE L1 0 6154 5716 2404 230 28 35 chr9 105457324 105457864 -36813580 - L1MA7 LINE L1 -3266 3084 2546 705 223 46 124 chr9 105457864 105458258 -36813186 + MLT1A1 LTR MaLR 1 363 -2 2404 230 28 35 chr9 105458258 105458300 -36813144 - L1MA7 LINE L1 -3804 2546 2505 4913 265 36 40 chr9 105458310 105459796 -36811648 - L1MA7 LINE L1 -4641 1640 161 340 341 51 32 chr9 105461492 105461709 -36809735 - L1MC4 LINE L1 -994 7048 6828 912 256 125 39 chr9 105462047 105462406 -36809038 - MSTD LTR MaLR -3 393 4 5236 220 60 120 chr9 105462409 105462750 -36808694 - MSTD-int LTR MaLR 0 1735 1375 1575 204 13 25 chr9 105462750 105463064 -36808380 - AluJb SINE Alu -2 310 1 5236 220 60 120 chr9 105463064 105464062 -36807382 - MSTD-int LTR MaLR -360 1375 533 1833 32 0 0 chr9 105464062 105464282 -36807162 - L1PA4 LINE L1 -3 6152 5933 5236 220 60 120 chr9 105464282 105464781 -36806663 - MSTD-int LTR MaLR -1202 533 6 968 203 150 58 chr9 105464791 105465151 -36806293 - MSTD LTR MaLR 0 396 4 226 341 11 22 chr9 105465223 105465314 -36806130 - L2 LINE L2 -35 3278 3189 26 30 0 0 chr9 105465736 105465769 -36805675 + AT_rich Low_complexity Low_complexity 1 33 0 23 78 0 0 chr9 105466623 105466674 -36804770 + AT_rich Low_complexity Low_complexity 1 51 0 37 62 0 0 chr9 105466710 105466775 -36804669 + AT_rich Low_complexity Low_complexity 1 65 0 240 149 0 0 chr9 105467031 105467078 -36804366 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2115 120 0 0 chr9 105467369 105467668 -36803776 - AluSx SINE Alu -13 299 1 189 213 0 0 chr9 105467822 105467869 -36803575 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 777 299 6 0 chr9 105468829 105469003 -36802441 + MER5A DNA MER1_type 1 175 -14 2640 253 42 0 chr9 105469045 105469619 -36801825 + MLT1A1-int LTR MaLR 1107 1704 -31 1481 199 18 101 chr9 105469646 105470044 -36801400 + MLT1A1 LTR MaLR 1 365 0 1529 201 21 3 chr9 105470317 105470690 -36800754 + L1 LINE L1 3094 3473 -2673 1497 218 26 3 chr9 105470799 105471138 -36800306 - L1 LINE L1 -1917 4229 3883 3458 120 22 19 chr9 105471178 105471768 -36799676 - L1MA3 LINE L1 -2 6303 5712 417 129 14 0 chr9 105471769 105471839 -36799605 + MSTD LTR MaLR 324 394 -2 2474 232 9 63 chr9 105471839 105472520 -36798924 + MSTD-int LTR MaLR 3 644 -1091 2227 115 0 0 chr9 105472520 105472815 -36798629 + AluSg SINE Alu 3 297 -13 2474 232 9 63 chr9 105472815 105472866 -36798578 + MSTD-int LTR MaLR 644 696 -1039 * 3801 292 26 28 chr9 105472859 105474230 -36797214 + L1PBa LINE L1 268 1635 -5228 3175 192 26 5 chr9 105474199 105474778 -36796666 + L1MA6 LINE L1 1 591 -5613 * 4501 154 18 8 chr9 105474774 105475182 -36796262 + L1PB2 LINE L1 5373 5794 -357 228 35 0 0 chr9 105475182 105475211 -36796233 + (TA)n Simple_repeat Simple_repeat 2 30 0 4501 154 18 8 chr9 105475211 105475572 -36795872 + L1PB2 LINE L1 5794 6150 -1 1089 235 31 22 chr9 105475612 105475935 -36795509 + L1 LINE L1 4754 5079 -1067 12533 205 42 21 chr9 105475963 105476665 -36794779 + L1MA6 LINE L1 2292 2978 -3379 2250 115 0 3 chr9 105476665 105476977 -36794467 + AluSq SINE Alu 1 311 -2 12533 205 42 21 chr9 105476977 105479679 -36791765 + L1MA6 LINE L1 2978 5763 -594 2376 177 26 16 chr9 105479932 105480281 -36791163 + L1MA6 LINE L1 5855 6212 -145 2687 146 9 0 chr9 105480281 105480705 -36790739 + MSTA LTR MaLR 1 428 0 2376 177 26 16 chr9 105480705 105480853 -36790591 + L1MA6 LINE L1 6212 6357 0 203 264 14 14 chr9 105480971 105481043 -36790401 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 206 203 13 25 chr9 105481419 105481498 -36789946 + (TA)n Simple_repeat Simple_repeat 2 79 0 1509 294 33 15 chr9 105481668 105482148 -36789296 + MLT1E2 LTR MaLR 138 626 0 21 0 0 0 chr9 105482595 105482616 -36788828 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 105482967 105482995 -36788449 + AT_rich Low_complexity Low_complexity 1 28 0 551 201 6 98 chr9 105485084 105485248 -36786196 - MER20 DNA MER1_type -70 149 1 1071 274 27 30 chr9 105486554 105486959 -36784485 - L1ME2 LINE L1 -109 6055 5652 1074 276 57 58 chr9 105487000 105487848 -36783596 - L1ME2 LINE L1 -1701 4445 3599 399 272 87 21 chr9 105487856 105488143 -36783301 - L1ME2 LINE L1 -3056 3090 2785 500 379 101 18 chr9 105489773 105490230 -36781214 - L3 LINE CR1 -1 1576 1082 2355 65 44 0 chr9 105490263 105490557 -36780887 - AluY SINE Alu -4 307 1 206 115 0 82 chr9 105491189 105491250 -36780194 + (TAA)n Simple_repeat Simple_repeat 3 58 0 600 216 188 0 chr9 105491314 105491490 -36779954 + MER3 DNA MER1_type 1 209 0 287 308 11 33 chr9 105492939 105493121 -36778323 + GA-rich Low_complexity Low_complexity 2 179 0 324 298 0 0 chr9 105493481 105493585 -36777859 + GA-rich Low_complexity Low_complexity 3 106 0 495 0 0 0 chr9 105493923 105493978 -36777466 + (CA)n Simple_repeat Simple_repeat 2 56 0 215 59 0 29 chr9 105494142 105494176 -36777268 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 2308 46 3 7 chr9 105494299 105494619 -36776825 - AluY SINE Alu 0 319 1 1137 178 35 15 chr9 105494703 105494962 -36776482 + L1MA8 LINE L1 6026 6289 -2 836 344 80 30 chr9 105496298 105497101 -36774343 + L2 LINE L2 2200 3040 -273 1636 159 7 4 chr9 105497118 105497388 -36774056 - AluJb SINE Alu -20 292 22 1658 155 57 3 chr9 105497409 105497725 -36773719 - L1MA2 LINE L1 -73 6231 5899 376 230 26 7 chr9 105497768 105497920 -36773524 + (TA)n Simple_repeat Simple_repeat 1 155 0 339 245 272 14 chr9 105498280 105498427 -36773017 - MIR SINE MIR -27 235 51 1882 137 10 22 chr9 105499853 105500166 -36771278 - AluSx SINE Alu -3 309 1 22 35 0 0 chr9 105500410 105500439 -36771005 + AT_rich Low_complexity Low_complexity 1 29 0 378 128 47 23 chr9 105500971 105501143 -36770301 + (TA)n Simple_repeat Simple_repeat 1 176 0 424 109 82 3 chr9 105501318 105501643 -36769801 + (TA)n Simple_repeat Simple_repeat 1 350 0 269 186 14 0 chr9 105502007 105502077 -36769367 + (TA)n Simple_repeat Simple_repeat 1 71 0 1852 186 49 5 chr9 105503770 105504140 -36767304 - MLT1B LTR MaLR -3 387 2 4303 206 61 15 chr9 105505422 105506743 -36764701 - L1MA10 LINE L1 0 6334 4951 24 0 0 0 chr9 105507000 105507024 -36764420 + AT_rich Low_complexity Low_complexity 1 24 0 476 333 41 0 chr9 105507068 105507239 -36764205 + MER45C DNA AcHobo 1 178 -775 399 364 87 11 chr9 105507228 105507492 -36763952 + MER45C DNA AcHobo 349 632 -321 * 282 240 0 0 chr9 105507489 105507539 -36763905 + MER45C DNA AcHobo 900 949 -4 * 1236 183 62 45 chr9 105507641 105507931 -36763513 - AluJo SINE Alu -11 301 7 297 0 0 0 chr9 105508267 105508300 -36763144 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2560 3 0 0 chr9 105508314 105508601 -36762843 - L1HS LINE L1 -3 6152 5866 416 320 39 0 chr9 105509318 105509446 -36761998 - MIR SINE MIR -125 137 5 465 57 71 29 chr9 105509474 105509544 -36761900 + THE1B LTR MaLR 1 73 -291 9322 124 7 2 chr9 105509544 105510895 -36760549 + THE1B-int LTR MaLR 218 1575 -5 1131 156 26 10 chr9 105510899 105511091 -36760353 + THE1B LTR MaLR 3 197 -167 973 147 10 19 chr9 105511126 105511322 -36760122 + THE1B LTR MaLR 176 362 -2 1689 154 11 0 chr9 105512773 105513058 -36758386 - L1M2 LINE L1 -482 5809 5522 313 292 26 26 chr9 105513336 105513449 -36757995 + MLT1F1 LTR MaLR 452 564 -3 1425 312 102 16 chr9 105513580 105514309 -36757135 + L1MA9 LINE L1 4 738 -5217 8693 204 64 33 chr9 105514330 105516355 -36755089 + L1MA9 LINE L1 2590 4551 -1649 716 212 0 0 chr9 105516355 105516487 -36754957 + FLAM_C SINE Alu 1 132 -1 8693 204 64 33 chr9 105516487 105517460 -36753984 + L1MA9 LINE L1 4551 5690 -510 297 0 0 0 chr9 105517460 105517493 -36753951 + (CA)n Simple_repeat Simple_repeat 2 34 0 8693 204 64 33 chr9 105517493 105517720 -36753724 + L1MA9 LINE L1 5690 5909 -291 1267 166 18 22 chr9 105517863 105518140 -36753304 + L1MA9 LINE L1 5920 6195 -5 227 77 0 26 chr9 105518433 105518472 -36752972 + (TTA)n Simple_repeat Simple_repeat 2 39 0 4089 271 48 49 chr9 105518477 105520319 -36751125 + L1MC3 LINE L1 5937 7776 -9 1047 198 13 8 chr9 105520397 105520635 -36750809 - L1MA4 LINE L1 -1 6299 6061 306 0 0 0 chr9 105521567 105521601 -36749843 + (TAA)n Simple_repeat Simple_repeat 1 34 0 1698 162 46 32 chr9 105521859 105522229 -36749215 - THE1C LTR MaLR 0 375 1 376 129 27 59 chr9 105522797 105522983 -36748461 + (TA)n Simple_repeat Simple_repeat 1 180 0 193 377 93 11 chr9 105522995 105523178 -36748266 + L2 LINE L2 2184 2381 -933 3955 286 23 40 chr9 105523524 105525190 -36746254 + L1PBa LINE L1 3 1640 -5223 652 210 24 0 chr9 105525161 105525285 -36746159 + L1PB3 LINE L1 8 134 -6070 * 10593 207 43 62 chr9 105525287 105528319 -36743125 + L1PB3 LINE L1 181 3267 -2944 1202 218 13 55 chr9 105528319 105528631 -36742813 + AluJo SINE Alu 1 299 -3 10593 207 43 62 chr9 105528631 105530854 -36740590 + L1PB3 LINE L1 3267 5365 -846 16791 25 1 0 chr9 105530854 105533608 -36737836 - L1PA3 LINE L1 0 6155 3399 10593 207 43 62 chr9 105533608 105534438 -36737006 + L1PB3 LINE L1 5365 6209 -2 621 265 43 57 chr9 105536359 105536589 -36734855 + L1M4b LINE L1 931 1157 -5702 1138 159 9 17 chr9 105536642 105536875 -36734569 - L1MA4 LINE L1 0 6300 6070 1843 203 90 31 chr9 105536894 105537436 -36734008 + L1MB8 LINE L1 5593 6166 -12 3600 173 27 4 chr9 105537765 105538469 -36732975 + L1MA9 LINE L1 5345 6064 -248 29 78 0 0 chr9 105538546 105538610 -36732834 + AT_rich Low_complexity Low_complexity 1 64 0 24 96 0 0 chr9 105538630 105538703 -36732741 + AT_rich Low_complexity Low_complexity 1 73 0 331 268 83 78 chr9 105538874 105539079 -36732365 - HAL1b LINE L1 -517 831 626 215 189 19 0 chr9 105539217 105539270 -36732174 + CT-rich Low_complexity Low_complexity 2 55 0 246 105 0 0 chr9 105539309 105539347 -36732097 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr9 105540511 105540532 -36730912 + AT_rich Low_complexity Low_complexity 1 21 0 573 125 31 10 chr9 105540635 105540731 -36730713 - AluSg/x SINE Alu -15 297 200 1553 272 62 57 chr9 105540870 105541577 -36729867 + L1MC3 LINE L1 1 711 -5334 667 254 100 28 chr9 105541610 105541998 -36729446 + L1MC3 LINE L1 1441 1975 -4589 2565 115 0 6 chr9 105541998 105542364 -36729080 + THE1B LTR MaLR 1 364 0 667 254 100 28 chr9 105542364 105542537 -36728907 + L1MC3 LINE L1 1975 2134 -4430 372 309 74 16 chr9 105542548 105542791 -36728653 + L1MC3 LINE L1 2202 2458 -4106 420 226 48 6 chr9 105542812 105542934 -36728510 + L1MC3 LINE L1 2509 2624 -4083 1997 209 14 27 chr9 105542934 105543374 -36728070 + Tigger2a DNA MER2_type 1 434 0 420 226 48 6 chr9 105543374 105543450 -36727994 + L1MC3 LINE L1 2624 2758 -3949 241 200 0 0 chr9 105543454 105543509 -36727935 + Alu SINE Alu 242 296 -6 2576 295 98 18 chr9 105543525 105545116 -36726328 + L1MC3 LINE L1 2907 4625 -1939 5818 215 32 10 chr9 105545117 105545950 -36725494 - L1PB4 LINE L1 -2 6154 5341 207 69 0 0 chr9 105545950 105545979 -36725465 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5818 215 32 10 chr9 105545979 105546862 -36724582 - L1PB4 LINE L1 -815 5341 4380 2799 3 0 0 chr9 105546862 105547168 -36724276 - AluYa5 SINE Alu -5 306 1 5818 215 32 10 chr9 105547168 105547678 -36723766 - L1PB4 LINE L1 -1776 4380 3883 21 36 0 0 chr9 105547723 105547751 -36723693 + AT_rich Low_complexity Low_complexity 1 28 0 1182 221 69 53 chr9 105547754 105548279 -36723165 + L1MC3 LINE L1 4682 5214 -1350 3329 235 82 26 chr9 105548290 105549635 -36721809 + L1MC3 LINE L1 5319 5821 -743 2005 207 54 44 chr9 105549632 105550111 -36721333 + L1MC3 LINE L1 7606 8094 -109 * 1844 143 11 0 chr9 105550111 105550390 -36721054 + AluY SINE Alu 2 283 -28 2005 207 54 44 chr9 105550390 105550500 -36720944 + L1MC3 LINE L1 8094 8201 -2 22 56 0 0 chr9 105551202 105551238 -36720206 + AT_rich Low_complexity Low_complexity 1 36 0 1485 108 0 0 chr9 105551425 105551639 -36719805 - L1PB1 LINE L1 0 6151 5938 820 129 0 1 chr9 105551844 105551979 -36719465 - L1PB1 LINE L1 -242 5909 5776 218 242 15 0 chr9 105551987 105552053 -36719391 + (TATG)n Simple_repeat Simple_repeat 1 67 0 2573 101 11 48 chr9 105552056 105552492 -36718952 - L1PB1 LINE L1 -371 5780 5361 372 281 94 28 chr9 105552625 105553017 -36718427 + L1M4 LINE L1 2210 2627 -3519 22 35 0 0 chr9 105553062 105553091 -36718353 + AT_rich Low_complexity Low_complexity 1 29 0 2384 78 0 3 chr9 105553151 105553460 -36717984 - AluY SINE Alu -3 308 1 1891 148 0 0 chr9 105553551 105553858 -36717586 - AluSx SINE Alu 0 307 1 21 0 0 0 chr9 105554394 105554415 -36717029 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 105554622 105554644 -36716800 + AT_rich Low_complexity Low_complexity 1 22 0 333 261 34 58 chr9 105554780 105554987 -36716457 - L1MEc LINE L1 -3519 2696 2495 285 285 177 23 chr9 105555266 105555396 -36716048 + MLT1H LTR MaLR 382 531 -18 565 291 39 29 chr9 105555422 105555728 -36715716 + L1M4 LINE L1 4948 5256 -890 22 35 0 0 chr9 105556431 105556460 -36714984 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr9 105557749 105557780 -36713664 + AT_rich Low_complexity Low_complexity 1 31 0 910 251 127 56 chr9 105558442 105559275 -36712169 - L1MEc LINE L1 -4144 2252 1361 883 181 115 52 chr9 105559483 105559770 -36711674 - L1MA9 LINE L1 -9 6303 5999 * 2190 144 71 18 chr9 105559765 105560202 -36711242 - L1 LINE L1 -1725 4421 3962 2528 126 0 7 chr9 105560202 105560583 -36710861 + THE1C LTR MaLR 1 432 0 2227 198 77 67 chr9 105560611 105561327 -36710117 - MER50 LTR ERV1 -2 732 10 409 206 62 0 chr9 105561333 105561430 -36710014 - L1 LINE L1 -2202 3944 3842 * 2226 264 64 2 chr9 105561427 105562237 -36709207 + L1 LINE L1 2493 3352 -2794 2551 238 78 11 chr9 105562255 105563212 -36708232 - L1MB8 LINE L1 -88 6090 5071 1254 119 0 11 chr9 105563257 105563434 -36708010 - AluSg SINE Alu -135 175 1 1851 243 121 16 chr9 105563451 105563475 -36707969 - L1MB8 LINE L1 -1095 5051 5031 2023 157 15 98 chr9 105563475 105563945 -36707499 - Tigger2a DNA MER2_type 0 434 4 1851 243 121 16 chr9 105563945 105564447 -36706997 - L1MB8 LINE L1 -1115 5031 4434 462 152 13 0 chr9 105564447 105564526 -36706918 - MADE1 DNA Mariner 0 80 1 1851 243 121 16 chr9 105564526 105564686 -36706758 - L1MB8 LINE L1 -1712 4434 4292 554 235 0 0 chr9 105564703 105564805 -36706639 + LTR53 LTR ERVL 402 503 -16 291 309 124 24 chr9 105565369 105565579 -36705865 - MIR SINE MIR -21 241 11 342 0 0 0 chr9 105565911 105565949 -36705495 + (CA)n Simple_repeat Simple_repeat 1 38 0 615 315 93 64 chr9 105567654 105568029 -36703415 + L2 LINE L2 2926 3311 -2 687 200 48 33 chr9 105568377 105568587 -36702857 + L1MA8 LINE L1 6077 6289 -2 22 0 0 0 chr9 105569205 105569227 -36702217 + AT_rich Low_complexity Low_complexity 1 22 0 2155 104 3 0 chr9 105570076 105570373 -36701071 + AluSp SINE Alu 1 298 -15 22 0 0 0 chr9 105570882 105570904 -36700540 + AT_rich Low_complexity Low_complexity 1 22 0 1620 183 10 10 chr9 105570942 105571242 -36700202 - AluJo SINE Alu -12 300 1 1147 124 65 5 chr9 105571271 105571457 -36699987 + MER30 DNA MER1_type 1 197 -33 1592 143 0 99 chr9 105572018 105572340 -36699104 - AluY SINE Alu -21 290 1 22 0 0 0 chr9 105572689 105572711 -36698733 + AT_rich Low_complexity Low_complexity 1 22 0 1548 168 26 3 chr9 105572711 105573020 -36698424 - L1M3 LINE L1 -555 5613 5298 2269 211 27 0 chr9 105573047 105573563 -36697881 + L1MB1 LINE L1 5633 6162 -6 2177 63 40 27 chr9 105574297 105574596 -36696848 + AluY SINE Alu 1 303 -8 31 0 0 0 chr9 105574757 105574788 -36696656 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr9 105574938 105574965 -36696479 + AT_rich Low_complexity Low_complexity 1 27 0 1523 181 14 7 chr9 105575085 105575377 -36696067 - AluJo SINE Alu -18 294 1 25 65 0 0 chr9 105575495 105575541 -36695903 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr9 105575567 105575609 -36695835 + AT_rich Low_complexity Low_complexity 1 42 0 253 311 0 0 chr9 105575639 105575700 -36695744 - MER2 DNA MER2_type 0 345 285 844 197 11 39 chr9 105575791 105575969 -36695475 - MER2 DNA MER2_type -172 173 1 2068 152 58 26 chr9 105576104 105576519 -36694925 + MSTA LTR MaLR 1 428 0 31 26 0 0 chr9 105576819 105576857 -36694587 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr9 105576981 105577009 -36694435 + AT_rich Low_complexity Low_complexity 1 28 0 370 275 21 14 chr9 105577075 105577217 -36694227 + L1M4 LINE L1 5129 5271 -875 258 161 0 18 chr9 105577246 105577302 -36694142 + L1ME1 LINE L1 5910 5964 -200 1383 223 3 3 chr9 105577377 105577664 -36693780 - AluJo SINE Alu -20 292 6 302 269 19 19 chr9 105577675 105577779 -36693665 + L1ME1 LINE L1 6043 6146 -20 379 299 67 6 chr9 105577806 105577970 -36693474 + L1ME LINE L1 5188 5361 -785 2219 94 3 3 chr9 105578004 105578303 -36693141 - AluSg SINE Alu -6 304 6 554 278 87 30 chr9 105578353 105578661 -36692783 + L1ME LINE L1 5480 5802 -368 23 78 0 0 chr9 105578744 105578795 -36692649 + AT_rich Low_complexity Low_complexity 1 51 0 656 204 7 28 chr9 105579589 105579731 -36691713 + AluJb SINE Alu 157 295 -17 328 233 132 82 chr9 105579752 105579971 -36691473 + L1M4 LINE L1 2207 2436 -3710 26 0 0 0 chr9 105580363 105580389 -36691055 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr9 105580675 105580705 -36690739 + AT_rich Low_complexity Low_complexity 1 30 0 414 356 76 4 chr9 105581176 105581401 -36690043 + MIR SINE MIR 6 246 -16 27 29 0 0 chr9 105581813 105581847 -36689597 + AT_rich Low_complexity Low_complexity 1 34 0 332 261 59 76 chr9 105581938 105582176 -36689268 + L1ME4a LINE L1 5724 5957 -164 299 174 33 11 chr9 105582569 105582661 -36688783 + (TA)n Simple_repeat Simple_repeat 1 94 0 4288 178 29 38 chr9 105583018 105583412 -36688032 + L1MB1 LINE L1 4922 5318 -850 1365 180 16 62 chr9 105583412 105583718 -36687726 + AluJb SINE Alu 1 292 -20 4288 178 29 38 chr9 105583718 105584577 -36686867 + L1MB1 LINE L1 5318 6168 0 4596 234 35 0 chr9 105584754 105585772 -36685672 - THE1B-int LTR MaLR -597 1054 3 2283 139 19 6 chr9 105585774 105586133 -36685311 - THE1B LTR MaLR 0 364 1 276 279 57 14 chr9 105586152 105586274 -36685170 + MIR SINE MIR 67 189 -58 7557 195 110 9 chr9 105589183 105590776 -36680668 + MER52A LTR ERV1 3 1755 0 1957 111 14 30 chr9 105591550 105591847 -36679597 - AluSx SINE Alu -20 292 1 426 344 60 41 chr9 105592364 105592626 -36678818 + L1M4 LINE L1 4138 4393 -1753 198 103 0 0 chr9 105592626 105592655 -36678789 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 426 344 60 41 chr9 105592655 105592904 -36678540 + L1M4 LINE L1 4393 4659 -1487 323 268 45 0 chr9 105592906 105593018 -36678426 + MER104 DNA Tc2 14 130 -50 21 36 0 0 chr9 105593332 105593360 -36678084 + AT_rich Low_complexity Low_complexity 1 28 0 2056 102 3 11 chr9 105593404 105593687 -36677757 - AluSx SINE Alu -27 285 5 1859 209 69 21 chr9 105594009 105594592 -36676852 - MER82 DNA MER2_type -6 647 1 22 35 0 0 chr9 105594635 105594664 -36676780 + AT_rich Low_complexity Low_complexity 1 29 0 4372 155 42 86 chr9 105594803 105595625 -36675819 + L1PA16 LINE L1 4942 5652 -514 1687 203 0 3 chr9 105595625 105595925 -36675519 + AluJo SINE Alu 1 299 -13 4372 155 42 86 chr9 105595925 105596419 -36675025 + L1PA16 LINE L1 5652 6166 0 290 358 86 6 chr9 105596724 105596886 -36674558 + MER5A DNA MER1_type 15 189 0 433 267 76 76 chr9 105597248 105597420 -36674024 + MIR SINE MIR 37 208 -54 2049 145 0 0 chr9 105597770 105598073 -36673371 - AluSx SINE Alu -1 311 9 282 317 67 0 chr9 105598670 105598774 -36672670 + MER5A DNA MER1_type 1 111 -78 355 354 33 0 chr9 105599677 105599858 -36671586 + MIR SINE MIR 74 260 -2 2100 105 0 25 chr9 105600542 105600857 -36670587 + AluY SINE Alu 1 307 -4 3527 265 108 10 chr9 105601350 105602430 -36669014 + L1MDa LINE L1 1 1186 -5354 1378 223 105 6 chr9 105602430 105602762 -36668682 - MLT1A1 LTR MaLR 0 365 1 1029 231 42 3 chr9 105602762 105603070 -36668374 + L1MDa LINE L1 1182 1501 -5039 851 176 113 0 chr9 105603080 105603284 -36668160 + L1MDa LINE L1 1613 1839 -4701 22 0 0 0 chr9 105603290 105603312 -36668132 + AT_rich Low_complexity Low_complexity 1 22 0 419 212 53 53 chr9 105603314 105603446 -36667998 + L1MDa LINE L1 2198 2329 -4211 5972 152 26 21 chr9 105603448 105604544 -36666900 + Tigger3b DNA MER2_type 5 1106 -125 1474 301 50 13 chr9 105604554 105605386 -36666058 + L1MDa LINE L1 3234 4096 -2444 761 194 41 12 chr9 105605370 105605540 -36665904 + L1MD1 LINE L1 6026 6200 -42 * 1902 139 72 17 chr9 105605542 105605888 -36665556 - THE1C LTR MaLR -2 373 9 4103 122 17 0 chr9 105605942 105606542 -36664902 + HSMAR1 DNA Mariner 1 610 -677 190 224 82 0 chr9 105606734 105606783 -36664661 - L2 LINE L2 0 3313 3261 21 36 0 0 chr9 105607053 105607081 -36664363 + AT_rich Low_complexity Low_complexity 1 28 0 242 333 14 0 chr9 105607665 105607737 -36663707 - L2 LINE L2 0 3313 3241 389 259 45 38 chr9 105607742 105607913 -36663531 + L1MA10 LINE L1 5997 6330 -4 4268 173 6 74 chr9 105607917 105608855 -36662589 + L1MCa LINE L1 269 1143 -5283 293 167 28 0 chr9 105609075 105609147 -36662297 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 3142 171 55 33 chr9 105609181 105609762 -36661682 - MER67C LTR ERV1 0 710 110 2260 83 0 3 chr9 105609762 105610083 -36661361 - AluY SINE Alu 0 311 1 3142 171 55 33 chr9 105610083 105610196 -36661248 - MER67C LTR ERV1 -600 110 1 21 0 0 0 chr9 105610880 105610901 -36660543 + AT_rich Low_complexity Low_complexity 1 21 0 190 239 43 0 chr9 105611057 105611103 -36660341 + L2 LINE L2 3266 3313 0 1933 225 33 25 chr9 105611473 105612025 -36659419 + LTR38 LTR ERV1 1 556 0 267 218 82 61 chr9 105612611 105612634 -36658810 - L1MA9 LINE L1 0 6312 6290 640 310 35 50 chr9 105612634 105613011 -36658433 - L1ME1 LINE L1 -15 6151 5781 1640 158 7 32 chr9 105613011 105613321 -36658123 - MER61B LTR ERV1 0 425 124 24231 109 33 22 chr9 105613342 105615385 -36656059 - MER61B-int LTR ERV1 0 5217 3113 2464 77 0 0 chr9 105615385 105615685 -36655759 + AluY SINE Alu 3 302 -9 24231 109 33 22 chr9 105615685 105617459 -36653985 - MER61B-int LTR ERV1 -2104 3113 1359 1068 81 13 0 chr9 105617460 105617609 -36653835 - MER61B-int LTR ERV1 -3960 1257 1107 * 3652 165 32 63 chr9 105617605 105618394 -36653050 - MER61B-int LTR ERV1 -4452 765 2 1543 201 7 32 chr9 105618395 105618704 -36652740 - MER61B LTR ERV1 0 425 125 603 229 56 13 chr9 105618739 105619084 -36652360 - L1ME1 LINE L1 0 7785 5555 1211 193 104 19 chr9 105619098 105619410 -36652034 - MER67C LTR ERV1 -193 517 135 750 165 28 44 chr9 105619477 105619659 -36651785 - MER67C LTR ERV1 -527 183 5 572 280 85 4 chr9 105619664 105619935 -36651509 - L1MEc LINE L1 -3546 2669 2377 294 95 0 0 chr9 105619943 105619985 -36651459 + (TA)n Simple_repeat Simple_repeat 2 43 0 242 95 0 0 chr9 105620151 105620193 -36651251 + LTR66 LTR ERVL 394 435 -175 289 138 52 17 chr9 105620360 105620418 -36651026 + MER67D LTR ERV1 129 188 -326 231 36 0 0 chr9 105620432 105620460 -36650984 + (TG)n Simple_repeat Simple_repeat 2 29 0 243 290 0 21 chr9 105620472 105620565 -36650879 - L1MC4 LINE L1 -1338 6704 6614 492 214 0 0 chr9 105620565 105620677 -36650767 + (TG)n Simple_repeat Simple_repeat 2 113 0 599 129 0 0 chr9 105620684 105620769 -36650675 - AluJb SINE Alu -19 293 209 460 294 45 21 chr9 105620804 105621093 -36650351 - L1MEc LINE L1 -4020 2376 2081 1961 179 73 0 chr9 105621146 105621515 -36649929 + MER57A LTR ERV1 8 403 0 466 296 36 39 chr9 105621602 105621909 -36649535 - L1MEc LINE L1 -4438 1958 1653 1836 294 119 14 chr9 105622015 105623027 -36648417 - L1MEc LINE L1 -5063 1333 216 620 255 40 40 chr9 105623070 105623321 -36648123 + LTR37A LTR ERV1 171 421 -5 2609 102 5 5 chr9 105623438 105623811 -36647633 - THE1C LTR MaLR -2 373 1 182 304 54 0 chr9 105625326 105625382 -36646062 - L2 LINE L2 -646 2668 2610 21 0 0 0 chr9 105625382 105625403 -36646041 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 105625609 105625658 -36645786 + AT_rich Low_complexity Low_complexity 1 49 0 30 69 0 0 chr9 105626032 105626090 -36645354 + AT_rich Low_complexity Low_complexity 1 58 0 920 254 111 17 chr9 105626213 105626827 -36644617 - L1MB7 LINE L1 -1 6183 5488 22 70 0 0 chr9 105627234 105627277 -36644167 + AT_rich Low_complexity Low_complexity 1 43 0 730 149 0 0 chr9 105627537 105627658 -36643786 + L1MA4 LINE L1 6165 6285 -15 1968 195 40 71 chr9 105628260 105628839 -36642605 - L1MC2 LINE L1 -8 6336 5776 1017 218 18 18 chr9 105628893 105629118 -36642326 + AluJb SINE Alu 18 242 -70 2278 81 3 0 chr9 105629338 105629633 -36641811 + AluSg SINE Alu 1 296 -14 191 152 22 0 chr9 105629890 105629936 -36641508 + (TAA)n Simple_repeat Simple_repeat 1 47 0 369 262 148 34 chr9 105630003 105630152 -36641292 - MIR SINE MIR -95 167 2 21 36 0 0 chr9 105630269 105630297 -36641147 + AT_rich Low_complexity Low_complexity 1 28 0 1166 159 82 9 chr9 105630526 105630746 -36640698 + MER46A DNA MER2_type 1 236 0 2472 62 3 0 chr9 105630850 105631157 -36640287 + AluY SINE Alu 3 310 -1 2069 73 0 0 chr9 105631363 105631622 -36639822 + AluY SINE Alu 1 259 -52 187 363 65 24 chr9 105631822 105631946 -36639498 + MIR SINE MIR 18 146 -116 273 295 64 0 chr9 105632014 105632092 -36639352 + L2 LINE L2 3197 3279 -34 668 240 14 0 chr9 105632645 105632791 -36638653 + MER77 LTR ERV1 5 152 -453 7096 214 35 20 chr9 105633221 105633294 -36638150 - L1 LINE L1 -2094 4234 4164 1905 156 7 0 chr9 105633294 105633583 -36637861 - AluSg SINE Alu -19 291 1 7096 214 35 20 chr9 105633583 105635587 -36635857 - L1 LINE L1 -2164 4164 2124 2459 108 6 0 chr9 105635623 105635976 -36635468 + THE1A LTR MaLR 1 355 0 10916 112 8 9 chr9 105635976 105637558 -36633886 + THE1A-int LTR MaLR 1 1580 0 2453 111 14 0 chr9 105637558 105637908 -36633536 + THE1A LTR MaLR 1 355 0 2996 276 43 27 chr9 105638020 105639258 -36632186 - L1 LINE L1 -4095 1233 539 1218 325 12 22 chr9 105640165 105640581 -36630863 - L1 LINE L1 -5533 716 305 1731 62 0 0 chr9 105641029 105641253 -36630191 - L1PA4 LINE L1 0 6155 5932 13047 38 2 43 chr9 105641253 105643001 -36628443 + L1P LINE L1 1432 3107 -3039 11984 246 19 13 chr9 105643068 105647004 -36624440 - L1PA15-16 LINE L1 -1083 5766 1805 250 310 0 0 chr9 105647478 105647536 -36623908 - MIR3 SINE MIR -5 203 146 2209 14 0 0 chr9 105648252 105648578 -36622866 - L1PA2 LINE L1 -697 5458 5132 6033 25 6 3 chr9 105648578 105649275 -36622169 + L1PA2 LINE L1 5437 6153 -2 22 0 0 0 chr9 105649947 105649969 -36621475 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr9 105650505 105650541 -36620903 + AT_rich Low_complexity Low_complexity 1 36 0 666 229 0 51 chr9 105650541 105650698 -36620746 - FRAM SINE Alu -26 150 2 2171 109 7 10 chr9 105651604 105651907 -36619537 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr9 105652245 105652274 -36619170 + AT_rich Low_complexity Low_complexity 1 29 0 937 186 0 0 chr9 105652407 105652586 -36618858 + AluSg/x SINE Alu 129 307 0 2456 71 0 3 chr9 105652678 105652987 -36618457 + AluY SINE Alu 1 308 -3 23 33 0 0 chr9 105653047 105653077 -36618367 + AT_rich Low_complexity Low_complexity 1 30 0 322 281 94 28 chr9 105653122 105653514 -36617930 - L1M1 LINE L1 -3519 4046 3629 1077 246 16 53 chr9 105653647 105654078 -36617366 + L1P5 LINE L1 5361 5775 -376 2502 156 12 20 chr9 105654501 105654989 -36616455 - L1MA3 LINE L1 -97 6208 5725 361 225 50 0 chr9 105654977 105655057 -36616387 - L1M4 LINE L1 -6168 1397 1314 * 2501 144 5 2 chr9 105655039 105655442 -36616002 - L1MA3 LINE L1 -581 5724 5321 9021 210 50 56 chr9 105655443 105658019 -36613425 - L1M1 LINE L1 -4328 3237 677 4159 225 18 2 chr9 105658033 105658824 -36612620 - L1M1 LINE L1 -6637 928 126 253 250 133 78 chr9 105658867 105658995 -36612449 - MLT2C1 LTR ERVL -182 215 81 * 742 195 104 37 chr9 105658883 105659124 -36612320 - MLT1E1 LTR MaLR -397 257 1 368 291 13 13 chr9 105659134 105659292 -36612152 + L1M4 LINE L1 2833 2990 -3156 46 54 0 0 chr9 105659299 105659373 -36612071 + AT_rich Low_complexity Low_complexity 1 74 0 243 0 0 0 chr9 105659703 105659730 -36611714 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 265 303 13 0 chr9 105659947 105660023 -36611421 + MER20 DNA MER1_type 22 98 -121 303 330 25 8 chr9 105660891 105661009 -36610435 - MLT1J2 LTR MaLR -315 135 16 25 0 0 0 chr9 105661234 105661259 -36610185 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr9 105661330 105661354 -36610090 + (TA)n Simple_repeat Simple_repeat 1 24 0 200 270 150 50 chr9 105661590 105661690 -36609754 - MIR SINE MIR -142 120 11 365 289 0 0 chr9 105661817 105661907 -36609537 - L1MC4 LINE L1 -1339 6703 6614 332 261 0 22 chr9 105661841 105661933 -36609511 + L1MC4 LINE L1 6614 6703 -1339 * 426 203 0 0 chr9 105661940 105662073 -36609371 + (TA)n Simple_repeat Simple_repeat 2 134 0 24 53 0 0 chr9 105662491 105662529 -36608915 + AT_rich Low_complexity Low_complexity 1 38 0 4483 153 36 29 chr9 105663271 105663879 -36607565 - Tigger1 DNA MER2_type 0 2418 1801 2389 109 0 0 chr9 105663879 105664192 -36607252 + AluSq SINE Alu 1 313 0 4483 153 36 29 chr9 105664192 105664413 -36607031 - Tigger1 DNA MER2_type -617 1801 1583 * 5998 163 50 7 chr9 105664412 105664659 -36606785 - Tigger1 DNA MER2_type -1209 1209 974 1591 202 6 6 chr9 105664659 105664971 -36606473 + AluJo SINE Alu 1 312 0 5998 163 50 7 chr9 105664971 105665831 -36605613 - Tigger1 DNA MER2_type -1444 974 55 323 176 0 44 chr9 105666240 105666308 -36605136 - L3 LINE CR1 -179 1398 1334 1243 107 44 10 chr9 105667244 105667450 -36603994 - L1PA13 LINE L1 -2 6161 5949 439 319 68 25 chr9 105667770 105668005 -36603439 - MLT1J1 LTR MaLR -133 313 69 22 35 0 0 chr9 105668509 105668538 -36602906 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr9 105670096 105670127 -36601317 + AT_rich Low_complexity Low_complexity 1 31 0 379 292 26 44 chr9 105670243 105670469 -36600975 - L1ME4a LINE L1 -196 5925 5704 246 247 0 0 chr9 105670637 105670714 -36600730 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 27 0 0 0 chr9 105670752 105670779 -36600665 + AT_rich Low_complexity Low_complexity 1 27 0 2272 102 3 0 chr9 105670979 105671283 -36600161 + AluSp SINE Alu 1 305 -8 251 194 32 0 chr9 105671283 105671345 -36600099 + MER116 DNA Mariner 12 75 -5 2448 141 143 37 chr9 105671589 105672101 -36599343 - LTR18B LTR ERVL -48 566 1 224 233 0 0 chr9 105672369 105672412 -36599032 + (TATG)n Simple_repeat Simple_repeat 3 45 0 309 326 109 5 chr9 105672742 105672786 -36598658 - MIR SINE MIR -10 252 214 1587 170 119 82 chr9 105672786 105673273 -36598171 + MLT1D LTR MaLR 1 505 0 309 326 109 5 chr9 105673273 105673412 -36598032 - MIR SINE MIR -48 214 50 2398 154 10 0 chr9 105673442 105673832 -36597612 + MER57A LTR ERV1 3 396 -7 230 282 0 0 chr9 105674223 105674294 -36597150 + L1MEc LINE L1 1592 1662 -4734 206 156 0 22 chr9 105674590 105674635 -36596809 + A-rich Low_complexity Low_complexity 5 48 0 4342 123 315 79 chr9 105674726 105676099 -36595345 + pTR5 LTR ERV1 743 2438 0 1474 155 11 40 chr9 105676757 105676944 -36594500 - MER4D LTR ERV1 -8 895 717 2144 138 32 48 chr9 105676944 105677344 -36594100 - MER48 LTR ERV1 0 398 5 1474 155 11 40 chr9 105677344 105677434 -36594010 - MER4D LTR ERV1 -186 717 626 2060 92 0 0 chr9 105677434 105677540 -36593904 + L1PB1 LINE L1 5683 5788 -363 2060 103 3 0 chr9 105677540 105677829 -36593615 + L1PB1 LINE L1 5856 6147 -4 2060 92 0 0 chr9 105677829 105677840 -36593604 + L1PB1 LINE L1 5788 6147 -4 11496 110 43 11 chr9 105677840 105678737 -36592707 - MER57-int LTR ERV1 -1081 6456 5589 2137 96 46 0 chr9 105678737 105679019 -36592425 - AluY SINE Alu -16 295 1 11496 110 43 11 chr9 105679019 105679965 -36591479 - MER57-int LTR ERV1 -1948 5589 2182 641 131 33 8 chr9 105679965 105680087 -36591357 + L1MA4 LINE L1 5959 6083 -217 3448 130 27 17 chr9 105680096 105680618 -36590826 + MER1A DNA MER1_type 3 529 0 996 156 0 21 chr9 105680618 105680804 -36590640 + L1MA9 LINE L1 6072 6253 -59 2253 192 39 72 chr9 105680804 105681398 -36590046 + LTR38B LTR ERV1 1 574 -36 359 113 16 0 chr9 105681421 105681483 -36589961 + L1MA9 LINE L1 6250 6312 0 3274 266 114 22 chr9 105681486 105683067 -36588377 + L1MC4 LINE L1 5191 5403 -743 1794 208 15 54 chr9 105683187 105683649 -36587795 + MER41B LTR ERV1 156 599 -36 1985 239 110 66 chr9 105683683 105683817 -36587627 + L1MC4a LINE L1 6848 6975 -833 204 40 0 0 chr9 105683817 105683842 -36587602 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1985 239 110 66 chr9 105683842 105684618 -36586826 + L1MC4a LINE L1 6975 7798 -10 1676 185 44 3 chr9 105685513 105685810 -36585634 + AluSx SINE Alu 1 309 -3 1501 143 65 93 chr9 105686444 105686830 -36584614 - THE1C LTR MaLR 0 375 1 260 322 78 0 chr9 105686836 105686926 -36584518 - L2 LINE L2 0 3272 3176 222 316 26 13 chr9 105687692 105687768 -36583676 + L2 LINE L2 3233 3309 -4 227 295 64 0 chr9 105689151 105689238 -36582206 + MIR SINE MIR 71 163 -61 587 343 32 5 chr9 105689372 105689591 -36581853 + Charlie1 DNA MER1_type 1 225 -2536 * 664 187 29 0 chr9 105689586 105689725 -36581719 + Charlie1 DNA MER1_type 2619 2761 0 2312 76 0 19 chr9 105690806 105691120 -36580324 - AluY SINE Alu -3 308 1 1884 238 54 8 chr9 105691543 105692026 -36579418 - MLT1D LTR MaLR 0 505 1 1554 123 98 0 chr9 105693011 105693246 -36578198 - AluSc SINE Alu -50 259 2 26 0 0 0 chr9 105693246 105693272 -36578172 + AT_rich Low_complexity Low_complexity 1 26 0 1876 122 32 29 chr9 105693272 105693308 -36578136 - AluSx SINE Alu 0 312 278 210 37 0 0 chr9 105693308 105693335 -36578109 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1876 122 32 29 chr9 105693335 105693609 -36577835 - AluSx SINE Alu -34 278 1 347 184 0 2 chr9 105693655 105693723 -36577721 - FLAM SINE Alu -22 111 52 644 122 131 0 chr9 105693769 105693876 -36577568 + THE1B LTR MaLR 195 315 -49 298 329 97 26 chr9 105694704 105694932 -36576512 - ERVL LTR ERVL -801 4963 4720 443 319 62 66 chr9 105695147 105695630 -36575814 + MLT1J LTR MaLR 28 508 -3 297 375 80 8 chr9 105695631 105696007 -36575437 - ERVL LTR ERVL -1575 4079 3677 581 276 75 71 chr9 105696821 105696894 -36574550 - ERVL LTR ERVL -3119 2645 2574 1303 186 168 52 chr9 105696894 105697276 -36574168 - MSTB LTR MaLR 0 426 1 8838 158 36 12 chr9 105697276 105698816 -36572628 - MSTA-int LTR MaLR 0 1580 3 1616 156 189 16 chr9 105698818 105699183 -36572261 - MSTA LTR MaLR 0 428 1 581 276 75 71 chr9 105699183 105699218 -36572226 - ERVL LTR ERVL -3190 2574 2541 6869 108 26 16 chr9 105699218 105700278 -36571166 - MER11C LTR ERVK 0 1071 1 581 276 75 71 chr9 105700278 105700458 -36570986 - ERVL LTR ERVL -3223 2541 2351 4773 39 2 3 chr9 105700865 105701728 -36569716 + L1PA4 LINE L1 4982 5844 -311 2849 46 0 0 chr9 105701828 105702178 -36569266 + L1PA4 LINE L1 5805 6154 -1 2337 85 3 0 chr9 105702389 105702683 -36568761 - AluSc SINE Alu -14 295 1 2906 209 5 5 chr9 105702994 105703553 -36567891 + MER68 LTR ERV1 4 562 0 227 259 61 53 chr9 105705896 105706027 -36565417 - MIR SINE MIR -2 260 129 2369 92 3 0 chr9 105706040 105706343 -36565101 - AluSc SINE Alu -5 304 1 268 352 107 42 chr9 105707549 105707904 -36563540 - L2 LINE L2 -459 2855 2478 28 0 0 0 chr9 105709082 105709110 -36562334 + AT_rich Low_complexity Low_complexity 1 28 0 210 91 0 0 chr9 105709864 105709897 -36561547 + (CAA)n Simple_repeat Simple_repeat 2 34 0 650 90 0 10 chr9 105709947 105710047 -36561397 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 5994 97 1 46 chr9 105710333 105712105 -36559339 + L1PA13 LINE L1 4449 6159 -4 2013 134 13 0 chr9 105712467 105712772 -36558672 + AluSx SINE Alu 1 309 -3 247 290 0 14 chr9 105712908 105712977 -36558467 + MIR SINE MIR 87 154 -108 529 304 54 40 chr9 105713088 105713384 -36558060 - L1M4 LINE L1 -2972 3174 2875 183 80 0 0 chr9 105715320 105715345 -36556099 + (A)n Simple_repeat Simple_repeat 1 25 0 242 318 8 23 chr9 105715644 105715773 -36555671 - Charlie8 DNA MER1_type -1923 494 368 564 250 125 6 chr9 105716574 105716742 -36554702 + MIR SINE MIR 73 260 -2 30 0 0 0 chr9 105716742 105716772 -36554672 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 105718248 105718269 -36553175 + AT_rich Low_complexity Low_complexity 1 21 0 2291 98 3 3 chr9 105718327 105718632 -36552812 - AluSp SINE Alu -8 305 1 3634 185 42 38 chr9 105719018 105719856 -36551588 + L1MB5 LINE L1 5287 6127 -47 1392 182 0 69 chr9 105719878 105720153 -36551291 - AluJo SINE Alu -52 260 5 262 179 0 0 chr9 105720156 105720212 -36551232 + L1MB5 LINE L1 6118 6173 -1 225 0 0 0 chr9 105720699 105720724 -36550720 + (T)n Simple_repeat Simple_repeat 1 25 0 203 345 14 56 chr9 105721534 105721576 -36549868 + L2 LINE L2 2835 2877 -395 219 88 0 0 chr9 105721576 105721610 -36549834 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1732 151 4 0 chr9 105721618 105721877 -36549567 - AluSx SINE Alu -52 260 1 203 345 14 56 chr9 105721877 105721967 -36549477 + L2 LINE L2 2884 2970 -302 2157 116 7 0 chr9 105722092 105722395 -36549049 - AluSx SINE Alu -7 305 1 623 349 92 36 chr9 105722856 105722910 -36548534 - L2 LINE L2 -219 3053 3003 2249 108 0 7 chr9 105722910 105723215 -36548229 + AluSg SINE Alu 1 303 -7 623 349 92 36 chr9 105723215 105723877 -36547567 - L2 LINE L2 -269 3003 2288 192 77 0 0 chr9 105724499 105724525 -36546919 + (TG)n Simple_repeat Simple_repeat 1 26 0 281 229 9 67 chr9 105724971 105725076 -36546368 - L2 LINE L2 -1046 2268 2170 1479 103 36 0 chr9 105725385 105725609 -36545835 + L1PA13 LINE L1 5891 6122 -41 31676 42 33 1 chr9 105725613 105729597 -36541847 + L1P LINE L1 2 4110 -2036 791 67 0 0 chr9 105729609 105729750 -36541694 + L1PA2 LINE L1 6050 6190 0 226 61 0 0 chr9 105729750 105729783 -36541661 + L1PA13 LINE L1 6112 6144 -19 235 377 0 0 chr9 105730776 105730845 -36540599 - L2 LINE L2 -25 3247 3179 21 0 0 0 chr9 105731942 105731963 -36539481 + AT_rich Low_complexity Low_complexity 1 21 0 3941 103 4 0 chr9 105732066 105732618 -36538826 - MER41A LTR ERV1 0 554 1 354 98 0 0 chr9 105732880 105732931 -36538513 + (TG)n Simple_repeat Simple_repeat 2 52 0 209 93 0 93 chr9 105732958 105733001 -36538443 + MIR SINE MIR 118 156 -106 261 228 0 0 chr9 105733046 105733103 -36538341 + Tigger5 DNA MER2_type 2262 2318 -5 * 365 263 0 0 chr9 105733102 105733182 -36538262 - Tigger5 DNA MER2_type -2243 80 1 642 244 76 51 chr9 105734475 105734750 -36536694 + L1ME3A LINE L1 5881 6162 -8 22 70 0 0 chr9 105735890 105735933 -36535511 + AT_rich Low_complexity Low_complexity 1 43 0 206 404 18 0 chr9 105736646 105736760 -36534684 + L2 LINE L2 2828 2943 -329 668 236 4 49 chr9 105737093 105737227 -36534217 + L1MD2 LINE L1 4811 4933 -1213 180 0 0 0 chr9 105737227 105737247 -36534197 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 668 236 4 49 chr9 105737247 105737337 -36534107 + L1MD2 LINE L1 4933 5025 -1121 2194 199 54 9 chr9 105737338 105737801 -36533643 + L1MD2 LINE L1 5407 5890 -469 840 185 185 0 chr9 105737810 105738026 -36533418 + L1MD2 LINE L1 6087 6342 -17 355 256 22 0 chr9 105738061 105738151 -36533293 - L1MDa LINE L1 -6428 112 21 336 48 0 0 chr9 105738264 105738306 -36533138 + (TG)n Simple_repeat Simple_repeat 2 43 0 26 50 0 0 chr9 105738492 105738532 -36532912 + AT_rich Low_complexity Low_complexity 1 40 0 566 184 31 0 chr9 105740130 105740223 -36531221 - Tigger2 DNA MER2_type -10 2708 2613 597 113 21 0 chr9 105740223 105740320 -36531124 - MER57B LTR ERV1 0 434 336 363 290 107 54 chr9 105740508 105740869 -36530575 + L2 LINE L2 2665 3117 -196 252 287 33 77 chr9 105741397 105741578 -36529866 + L2 LINE L2 3131 3303 -10 645 202 24 0 chr9 105741605 105741729 -36529715 - FLAM_A SINE Alu 0 142 16 1494 155 11 0 chr9 105741754 105742025 -36529419 + L1MA4 LINE L1 6021 6294 -6 338 266 84 39 chr9 105742115 105742269 -36529175 + L1M4 LINE L1 4307 4467 -1679 466 29 44 0 chr9 105742294 105742362 -36529082 - L1PA4 LINE L1 -2 6153 6083 502 284 73 78 chr9 105742595 105743200 -36528244 - L1M4 LINE L1 -1941 4205 3604 449 268 13 13 chr9 105743341 105743494 -36527950 - L1ME1 LINE L1 -3 6163 6011 253 242 18 66 chr9 105743498 105743642 -36527802 + L1ME1 LINE L1 5868 6005 -159 288 357 48 12 chr9 105743809 105743977 -36527467 - MIR SINE MIR -32 230 57 2589 106 0 11 chr9 105744034 105744401 -36527043 - THE1B LTR MaLR -1 363 1 9242 108 90 38 chr9 105744401 105745903 -36525541 - THE1B-int LTR MaLR 0 1580 1 2457 133 6 0 chr9 105745903 105746265 -36525179 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr9 105747111 105747133 -36524311 + AT_rich Low_complexity Low_complexity 1 22 0 2321 70 7 0 chr9 105747420 105747722 -36523722 - AluY SINE Alu -7 304 1 334 182 39 0 chr9 105747864 105747941 -36523503 + MADE1 DNA Mariner 1 80 0 568 272 30 52 chr9 105748969 105749201 -36522243 + L1MB7 LINE L1 5936 6162 -22 269 89 22 0 chr9 105749298 105749343 -36522101 + (CA)n Simple_repeat Simple_repeat 2 47 0 2089 132 7 0 chr9 105749365 105749668 -36521776 - AluSx SINE Alu -5 307 3 405 0 0 0 chr9 105750825 105750870 -36520574 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 2433 73 129 6 chr9 105750996 105751352 -36520092 + MLT2A1 LTR ERVL 1 400 -44 264 200 0 0 chr9 105751352 105751407 -36520037 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 246 173 58 0 chr9 105751407 105751459 -36519985 + MLT2A1 LTR ERVL 399 453 0 1893 163 41 24 chr9 105751736 105752105 -36519339 - L1PB4 LINE L1 0 6156 5782 34 42 0 0 chr9 105752105 105752153 -36519291 + AT_rich Low_complexity Low_complexity 1 48 0 2850 140 11 59 chr9 105752153 105752782 -36518662 - L1PB4 LINE L1 -369 5787 5186 23 86 0 0 chr9 105753179 105753237 -36518207 + AT_rich Low_complexity Low_complexity 1 58 0 1636 134 163 83 chr9 105753648 105754022 -36517422 - MER4A LTR ERV1 0 664 261 595 141 0 10 chr9 105754022 105754121 -36517323 - MER4A LTR ERV1 -566 98 1 296 294 76 0 chr9 105754325 105754417 -36517027 - MER63 DNA MER1_type -110 726 2 233 238 16 0 chr9 105754442 105754505 -36516939 + L1ME1 LINE L1 3972 4035 -2111 316 247 147 65 chr9 105754549 105754780 -36516664 + L1ME1 LINE L1 4757 5006 -1140 * 353 325 30 38 chr9 105754771 105755008 -36516436 + L1ME2 LINE L1 5919 6153 -11 440 285 21 14 chr9 105755106 105755250 -36516194 + L1ME1 LINE L1 5883 6027 -139 3268 216 37 14 chr9 105755286 105756121 -36515323 - L1 LINE L1 -2115 4031 3178 557 289 101 42 chr9 105756140 105756863 -36514581 + L1M4 LINE L1 2799 3564 -2582 24 0 0 0 chr9 105757626 105757650 -36513794 + AT_rich Low_complexity Low_complexity 1 24 0 532 232 40 8 chr9 105757848 105757973 -36513471 - MSTB LTR MaLR -84 342 214 215 167 61 0 chr9 105758006 105758072 -36513372 + (TA)n Simple_repeat Simple_repeat 1 70 0 24 0 0 0 chr9 105758289 105758313 -36513131 + AT_rich Low_complexity Low_complexity 1 24 0 21 100 0 0 chr9 105758345 105758415 -36513029 + AT_rich Low_complexity Low_complexity 1 70 0 3343 228 41 6 chr9 105758745 105759568 -36511876 - Tigger6a DNA MER2_type -19 1064 213 739 182 0 0 chr9 105759571 105759692 -36511752 + LOR1-int LTR ERV1 95 215 -7905 492 287 39 8 chr9 105759732 105759861 -36511583 + MSTB LTR MaLR 213 345 -81 252 383 8 8 chr9 105759958 105760078 -36511366 + L1P4 LINE L1 892 1011 -6563 4168 250 20 19 chr9 105760137 105761497 -36509947 + L1P4 LINE L1 2237 3605 -3979 2023 235 52 56 chr9 105761497 105762260 -36509184 - L1P4 LINE L1 -2380 4561 3802 * 6347 214 33 12 chr9 105762258 105763191 -36508253 + L1P4 LINE L1 4555 5526 -1435 182 37 37 0 chr9 105763191 105763218 -36508226 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6347 214 33 12 chr9 105763218 105763989 -36507455 + L1P4 LINE L1 5526 6280 -681 1851 151 14 0 chr9 105763998 105764290 -36507154 + AluSx SINE Alu 1 296 -16 548 181 101 7 chr9 105764402 105764551 -36506893 + L1MB8 LINE L1 6010 6172 -6 317 261 114 38 chr9 105765040 105765224 -36506220 + MLT1L LTR MaLR 394 591 -24 1203 285 77 12 chr9 105765688 105766354 -36505090 - L1MCa LINE L1 -1702 5239 4531 305 215 46 0 chr9 105766486 105766551 -36504893 - MER20 DNA MER1_type -1 218 151 1556 288 66 41 chr9 105766556 105767612 -36503832 - L1MCa LINE L1 -3234 3707 2680 900 279 18 0 chr9 105767612 105767831 -36503613 + MER58A DNA MER1_type 2 224 0 1556 288 66 41 chr9 105767831 105768484 -36502960 - L1MCa LINE L1 -4261 2680 1777 1896 162 0 0 chr9 105768484 105768781 -36502663 + AluSx SINE Alu 1 297 -15 1556 288 66 41 chr9 105768781 105769078 -36502366 - L1MCa LINE L1 -5164 1777 1489 9136 29 0 12 chr9 105769229 105771097 -36500347 + L1PA3 LINE L1 4295 6151 -4 440 55 22 66 chr9 105771102 105771193 -36500251 + (TAAAA)n Simple_repeat Simple_repeat 2 88 0 518 234 8 0 chr9 105771231 105771355 -36500089 - L1MCa LINE L1 -5148 1275 1151 2073 232 23 36 chr9 105771356 105771536 -36499908 + MER76 LTR ERV 138 319 -369 1832 119 193 11 chr9 105771536 105771898 -36499546 - MSTA LTR MaLR 0 428 1 2073 232 23 36 chr9 105771898 105772272 -36499172 + MER76 LTR ERV 319 685 -3 21 0 0 0 chr9 105772579 105772600 -36498844 + AT_rich Low_complexity Low_complexity 1 21 0 1956 103 4 0 chr9 105772600 105772863 -36498581 - AluY SINE Alu -13 298 35 486 296 77 28 chr9 105772983 105773345 -36498099 - L1MCa LINE L1 -6026 397 18 1364 187 15 60 chr9 105773406 105773737 -36497707 - L1MA8 LINE L1 -44 6247 5932 2254 250 17 50 chr9 105775776 105776411 -36495033 + MLT1E2 LTR MaLR 5 618 -8 572 254 7 14 chr9 105776466 105776608 -36494836 - MLT1E2 LTR MaLR -475 151 11 1362 223 50 19 chr9 105777032 105777395 -36494049 - MLT1A2 LTR MaLR 0 374 1 351 0 0 0 chr9 105777710 105777749 -36493695 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 647 298 5 19 chr9 105780683 105780892 -36490552 - MIR SINE MIR -1 261 56 23 0 0 0 chr9 105781227 105781250 -36490194 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr9 105781656 105781680 -36489764 + AT_rich Low_complexity Low_complexity 1 24 0 489 110 0 0 chr9 105782347 105782420 -36489024 + (TA)n Simple_repeat Simple_repeat 2 74 0 261 279 31 47 chr9 105782680 105782809 -36488635 + MLT1H LTR MaLR 81 207 -342 345 358 60 15 chr9 105783430 105783631 -36487813 + L2 LINE L2 2838 3047 -225 23 0 0 0 chr9 105783781 105783804 -36487640 + AT_rich Low_complexity Low_complexity 1 23 0 452 299 86 28 chr9 105784529 105784755 -36486689 - MIR SINE MIR 0 262 30 4084 148 27 18 chr9 105785374 105786079 -36485365 - MER50 LTR ERV1 -23 711 1 3785 122 2 53 chr9 105786245 105786887 -36484557 + MER4B LTR ERV1 1 609 -1 23 68 0 0 chr9 105787092 105787136 -36484308 + AT_rich Low_complexity Low_complexity 1 44 0 377 332 40 56 chr9 105788018 105788190 -36483254 + HAL1b LINE L1 379 545 -803 2098 117 3 3 chr9 105788190 105788489 -36482955 - AluSx SINE Alu -13 299 1 377 332 40 56 chr9 105788489 105788620 -36482824 + HAL1b LINE L1 545 677 -671 267 162 14 27 chr9 105788769 105788843 -36482601 - L1MA7 LINE L1 -1 6290 6218 22 0 0 0 chr9 105789072 105789094 -36482350 + AT_rich Low_complexity Low_complexity 1 22 0 1677 164 0 52 chr9 105790831 105791141 -36480303 - AluJb SINE Alu -18 294 1 1247 288 57 60 chr9 105791563 105791637 -36479807 + L1ME LINE L1 31 104 -5966 2116 125 0 0 chr9 105791637 105791940 -36479504 + AluSq SINE Alu 1 303 -10 1247 288 57 60 chr9 105791940 105792500 -36478944 + L1ME LINE L1 104 665 -5405 4379 138 31 24 chr9 105792500 105792729 -36478715 - L1MA4A LINE L1 0 6303 6077 1996 137 3 0 chr9 105792729 105793028 -36478416 - AluSg SINE Alu -10 300 1 4379 138 31 24 chr9 105793028 105793636 -36477808 - L1MA4A LINE L1 -226 6077 5460 1247 288 57 60 chr9 105793636 105793723 -36477721 + L1ME LINE L1 665 751 -5319 361 282 77 6 chr9 105793700 105793870 -36477574 + L1M4 LINE L1 3877 4058 -2022 * 377 231 20 10 chr9 105793872 105793972 -36477472 - L1MD2 LINE L1 -65 6101 6032 1383 177 23 2 chr9 105794085 105794386 -36477058 + L1PA16 LINE L1 5816 6157 -9 471 174 56 76 chr9 105794395 105794539 -36476905 - Tigger6 DNA MER2_type -1368 229 89 815 329 69 18 chr9 105794768 105795160 -36476284 + LTR16C LTR ERVL 76 487 -4 2654 150 5 2 chr9 105796197 105796624 -36474820 - MSTA LTR MaLR 0 428 1 241 257 0 20 chr9 105797795 105797896 -36473548 + GA-rich Low_complexity Low_complexity 2 100 0 819 194 87 119 chr9 105797935 105798340 -36473104 + MLT1A1 LTR MaLR 1 383 -13 22 0 0 0 chr9 105798349 105798371 -36473073 + AT_rich Low_complexity Low_complexity 1 22 0 1142 246 185 100 chr9 105798535 105799136 -36472308 - MLT1E3 LTR MaLR 0 624 3 540 285 84 16 chr9 105799605 105799974 -36471470 + L1M4 LINE L1 2131 2524 -3622 2188 108 0 3 chr9 105801538 105801834 -36469610 + AluSq SINE Alu 1 295 -18 7390 35 5 0 chr9 105803435 105804677 -36466767 + L1PA4 LINE L1 4909 6154 -1 4121 85 45 0 chr9 105804834 105805413 -36466031 - LTR14B LTR ERVK 0 608 4 1688 118 59 0 chr9 105805698 105805969 -36465475 + L1PA11 LINE L1 5883 6169 -5 775 105 81 0 chr9 105807161 105807285 -36464159 + L1PA16 LINE L1 6033 6166 0 23 0 0 0 chr9 105808357 105808380 -36463064 + AT_rich Low_complexity Low_complexity 1 23 0 2122 121 0 0 chr9 105808745 105809035 -36462409 + AluSq SINE Alu 11 300 -13 180 0 0 0 chr9 105809403 105809423 -36462021 + (TA)n Simple_repeat Simple_repeat 2 21 0 228 213 0 0 chr9 105809534 105809595 -36461849 + (CA)n Simple_repeat Simple_repeat 2 62 0 27 0 0 0 chr9 105809784 105809811 -36461633 + AT_rich Low_complexity Low_complexity 1 27 0 248 224 0 17 chr9 105810511 105810569 -36460875 + MER112 DNA MER1_type 1 57 -203 5853 157 21 20 chr9 105810595 105811642 -36459802 + MER39B-int LTR ERV1 3643 4688 -1643 3689 170 54 64 chr9 105811642 105812605 -36458839 - LTR13 LTR ERVK -1 953 1 5853 157 21 20 chr9 105812605 105812853 -36458591 + MER39B-int LTR ERV1 4688 6183 -148 2247 167 15 8 chr9 105812915 105813516 -36457928 + MER39B LTR ERV1 5 652 -1 215 191 16 16 chr9 105813590 105813653 -36457791 + (TTATA)n Simple_repeat Simple_repeat 4 66 0 863 197 113 75 chr9 105813790 105814195 -36457249 - MLT2B1 LTR ERVL 0 414 1 345 171 0 12 chr9 105814600 105814682 -36456762 + MLT1D LTR MaLR 91 172 -333 280 136 0 0 chr9 105814771 105814815 -36456629 + MLT1E2 LTR MaLR 583 626 0 362 325 82 49 chr9 105815005 105815389 -36456055 - L1ME LINE L1 -408 5713 5318 227 319 77 11 chr9 105815821 105815912 -36455532 - L2 LINE L2 -2 3270 3174 2051 112 0 33 chr9 105816086 105816389 -36455055 + AluSx SINE Alu 4 296 -16 451 171 11 0 chr9 105816772 105816860 -36454584 + AluJ/FRAM SINE Alu 218 306 -6 394 341 8 0 chr9 105816952 105817081 -36454363 + MER94 DNA DNA 5 134 0 210 309 0 0 chr9 105817916 105817984 -36453460 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 2387 181 40 19 chr9 105818415 105818989 -36452455 - LTR60 LTR ERV1 0 586 1 181 294 266 9 chr9 105819292 105819401 -36452043 - L2 LINE L2 -9 3263 3127 23 33 0 0 chr9 105819777 105819807 -36451637 + AT_rich Low_complexity Low_complexity 1 30 0 189 250 0 0 chr9 105820026 105820086 -36451358 + (TA)n Simple_repeat Simple_repeat 2 61 0 348 278 43 49 chr9 105820146 105820470 -36450974 - HAL1b LINE L1 -172 1176 855 1199 254 24 42 chr9 105820568 105820852 -36450592 - MLT1A2 LTR MaLR 0 374 97 1728 245 26 54 chr9 105820852 105821045 -36450399 - LTR27 LTR ERV1 -2 634 437 2157 93 48 0 chr9 105821045 105821336 -36450108 + AluSg SINE Alu 1 305 -5 1728 245 26 54 chr9 105821336 105821794 -36449650 - LTR27 LTR ERV1 -199 437 1 1199 254 24 42 chr9 105821794 105821887 -36449557 - MLT1A2 LTR MaLR -277 97 4 228 289 10 21 chr9 105821892 105821989 -36449455 - HAL1b LINE L1 -587 761 666 29 28 0 0 chr9 105821991 105822027 -36449417 + AT_rich Low_complexity Low_complexity 1 36 0 540 295 111 15 chr9 105822027 105822298 -36449146 - L1ME3 LINE L1 -11 6151 5855 317 211 0 0 chr9 105822437 105822494 -36448950 - L1ME3 LINE L1 -498 5672 5616 966 325 71 59 chr9 105822592 105823241 -36448203 + L1M3d LINE L1 1 657 -5234 250 259 0 0 chr9 105823366 105823420 -36448024 + L1 LINE L1 309 362 -5529 * 4688 200 29 63 chr9 105823418 105824774 -36446670 + L1 LINE L1 3932 5241 -743 1021 267 21 0 chr9 105825308 105825597 -36445847 - L1ME1 LINE L1 -107 6059 5768 392 210 108 113 chr9 105825803 105825989 -36445455 - MLT1H LTR MaLR -3 546 362 295 274 147 10 chr9 105826095 105826197 -36445247 - MLT1H LTR MaLR -426 123 8 234 133 17 50 chr9 105826326 105826386 -36445058 + (TG)n Simple_repeat Simple_repeat 1 58 0 785 226 55 58 chr9 105827032 105827341 -36444103 - MER33 DNA MER1_type -15 309 2 180 212 30 91 chr9 105827868 105827934 -36443510 + L2 LINE L2 3169 3230 -83 274 290 143 27 chr9 105828184 105828408 -36443036 - MIR SINE MIR -10 252 3 249 354 33 23 chr9 105828922 105829137 -36442307 - MIR SINE MIR -26 236 20 7398 38 0 0 chr9 105829143 105830385 -36441059 - L1PA4 LINE L1 -1 6154 4911 2118 50 0 0 chr9 105830385 105830646 -36440798 + L1P LINE L1 4599 4859 -1287 2194 113 0 0 chr9 105830799 105831092 -36440352 - AluSx SINE Alu -14 298 6 26 0 0 0 chr9 105831483 105831509 -36439935 + AT_rich Low_complexity Low_complexity 1 26 0 2126 122 14 0 chr9 105831644 105831940 -36439504 + AluSx SINE Alu 1 300 -12 640 282 66 50 chr9 105832085 105832405 -36439039 + MLT1H LTR MaLR 4 327 -215 636 181 47 0 chr9 105832426 105832553 -36438891 - FLAM_A SINE Alu 0 133 1 1617 153 60 4 chr9 105832920 105833201 -36438243 - AluJb SINE Alu -10 302 6 1460 166 8 8 chr9 105833245 105833510 -36437934 + L1MC1 LINE L1 6063 6327 -6 22 0 0 0 chr9 105833598 105833620 -36437824 + AT_rich Low_complexity Low_complexity 1 22 0 1603 205 0 0 chr9 105834453 105834746 -36436698 + AluJb SINE Alu 3 295 -17 571 309 119 5 chr9 105834771 105834981 -36436463 - MIR SINE MIR 0 262 29 216 0 0 0 chr9 105836082 105836106 -36435338 + (A)n Simple_repeat Simple_repeat 1 24 0 278 311 22 33 chr9 105836126 105836216 -36435228 - MIR SINE MIR -126 136 48 861 55 0 0 chr9 105836575 105836685 -36434759 - L1PA2 LINE L1 -2 6153 6044 212 303 92 18 chr9 105837879 105837988 -36433456 + L3 LINE CR1 1255 1371 -206 181 261 91 34 chr9 105838057 105838145 -36433299 - L2 LINE L2 -1 3271 3179 1454 165 66 26 chr9 105840391 105840686 -36430758 + AluJo SINE Alu 1 306 0 294 150 62 12 chr9 105841565 105841645 -36429799 + CT-rich Low_complexity Low_complexity 2 85 0 1464 164 65 27 chr9 105841646 105841939 -36429505 - AluJo SINE Alu 0 312 9 389 219 133 0 chr9 105842678 105842783 -36428661 + L1M4 LINE L1 2295 2413 -3733 22 35 0 0 chr9 105843321 105843350 -36428094 + AT_rich Low_complexity Low_complexity 1 29 0 269 214 101 11 chr9 105843532 105843621 -36427823 + MER67C LTR ERV1 1 97 -613 * 1140 166 8 75 chr9 105843605 105843826 -36427618 + MER67C LTR ERV1 464 698 -12 351 0 0 0 chr9 105843826 105843865 -36427579 + (TG)n Simple_repeat Simple_repeat 2 40 0 2182 119 0 0 chr9 105843872 105844167 -36427277 - AluSg SINE Alu -13 297 3 1140 166 8 75 chr9 105844167 105844202 -36427242 + MER67C LTR ERV1 704 710 0 3326 33 0 0 chr9 105844909 105845318 -36426126 + L1PA3 LINE L1 5769 6155 0 477 0 0 0 chr9 105845950 105846003 -36425441 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2382 77 24 0 chr9 105846549 105846846 -36424598 + AluY SINE Alu 1 304 -7 185 156 0 22 chr9 105847049 105847094 -36424350 + CT-rich Low_complexity Low_complexity 3 46 0 23 33 0 0 chr9 105847223 105847253 -36424191 + AT_rich Low_complexity Low_complexity 1 30 0 2108 153 0 0 chr9 105849782 105850090 -36421354 + AluJb SINE Alu 3 310 -2 2675 159 53 15 chr9 105850244 105850717 -36420727 + LTR42 LTR ERVL 5 495 0 2266 206 39 53 chr9 105851207 105851844 -36419600 - L1MC2 LINE L1 -26 6318 5691 279 202 24 24 chr9 105851853 105851937 -36419507 + L1MCa LINE L1 1406 1489 -4937 3091 223 69 47 chr9 105851939 105854022 -36417422 - L1MCb LINE L1 -4304 2260 13 24 32 0 0 chr9 105854822 105854853 -36416591 + AT_rich Low_complexity Low_complexity 1 31 0 225 372 41 14 chr9 105855768 105855913 -36415531 - L2 LINE L2 -614 2700 2552 363 357 107 42 chr9 105856387 105857274 -36414170 - L2 LINE L2 -842 2472 1528 2244 316 43 32 chr9 105857564 105858034 -36413410 - HERV16 LTR ERVL -3907 1089 625 2265 71 0 59 chr9 105858034 105858357 -36413087 - AluY SINE Alu -7 304 1 2244 316 43 32 chr9 105858357 105858963 -36412481 - HERV16 LTR ERVL -4371 625 2 2335 95 0 3 chr9 105859403 105859708 -36411736 - AluSc SINE Alu -5 304 1 21 71 0 0 chr9 105860083 105860125 -36411319 + AT_rich Low_complexity Low_complexity 1 42 0 188 372 51 15 chr9 105862129 105862325 -36409119 + L2 LINE L2 2048 2250 -1064 943 200 77 109 chr9 105862616 105862991 -36408453 + MLT1A1 LTR MaLR 3 365 0 26 0 0 0 chr9 105864632 105864658 -36406786 + AT_rich Low_complexity Low_complexity 1 26 0 1492 220 19 75 chr9 105865709 105866122 -36405322 + MLT1B LTR MaLR 1 390 0 886 234 40 59 chr9 105866442 105866715 -36404729 + L1MB8 LINE L1 3 270 -6589 * 3421 256 77 25 chr9 105866712 105867354 -36404090 + L1MB8 LINE L1 4183 4790 -2167 180 0 0 0 chr9 105867354 105867374 -36404070 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr9 105867373 105867400 -36404044 + (GA)n Simple_repeat Simple_repeat 2 28 0 3421 256 77 25 chr9 105867374 105868110 -36403334 + L1MB8 LINE L1 4790 5605 -1352 3324 211 75 10 chr9 105868144 105869124 -36402320 + L1MB8 LINE L1 5903 6946 -43 2377 83 0 7 chr9 105869646 105869947 -36401497 + AluY SINE Alu 1 299 -12 180 0 0 0 chr9 105870028 105870048 -36401396 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 342 327 19 0 chr9 105871106 105871213 -36400231 + L2 LINE L2 3201 3309 -4 245 286 12 36 chr9 105871203 105871287 -36400157 + MIR SINE MIR 54 135 -127 * 341 266 53 9 chr9 105871428 105871541 -36399903 + MIR SINE MIR 16 133 -75 960 198 0 0 chr9 105871989 105872151 -36399293 + AluJb SINE Alu 145 306 -6 275 275 100 76 chr9 105872197 105872593 -36398851 + L1M4 LINE L1 2399 2784 -3362 2212 104 0 22 chr9 105872593 105872910 -36398534 + AluSg SINE Alu 1 310 0 275 275 100 76 chr9 105872910 105873029 -36398415 + L1M4 LINE L1 2784 2899 -3247 761 103 88 7 chr9 105873029 105873165 -36398279 - L1MB3 LINE L1 -3 6180 6034 275 275 100 76 chr9 105873165 105873400 -36398044 + L1M4 LINE L1 2899 3179 -2967 1987 138 3 13 chr9 105873400 105873698 -36397746 + AluSx SINE Alu 5 299 -13 275 275 100 76 chr9 105873698 105873869 -36397575 + L1M4 LINE L1 3179 3344 -2802 745 161 0 17 chr9 105873902 105874068 -36397376 + FLAM_C SINE Alu 2 165 0 990 158 7 7 chr9 105874770 105874922 -36396522 + FRAM SINE Alu 2 153 -13 218 260 0 0 chr9 105875386 105875436 -36396008 - MIR SINE MIR -85 123 74 378 212 61 76 chr9 105877700 105877832 -36393612 + MIR SINE MIR 16 145 -63 276 264 11 44 chr9 105878409 105878500 -36392944 + MIR SINE MIR 13 100 -162 213 235 217 35 chr9 105879353 105879468 -36391976 - MIR3 SINE MIR -27 181 46 1406 120 60 0 chr9 105879468 105879684 -36391760 - AluSg/x SINE Alu -10 302 74 207 277 11 32 chr9 105881823 105881917 -36389527 + GA-rich Low_complexity Low_complexity 4 95 0 419 171 0 85 chr9 105882137 105882219 -36389225 + MER2 DNA MER2_type 270 344 -1 375 295 134 7 chr9 105882655 105882804 -36388640 + MIR3 SINE MIR 30 197 -11 185 279 73 15 chr9 105883802 105883870 -36387574 - MIR SINE MIR -81 181 110 212 143 24 24 chr9 105884002 105884044 -36387400 - MIR SINE MIR -58 150 109 530 270 16 0 chr9 105884188 105884314 -36387130 + MIR SINE MIR 18 145 -63 403 245 33 0 chr9 105884812 105884948 -36386496 + MER5B DNA MER1_type 7 157 -32 1252 116 0 0 chr9 105884948 105885112 -36386332 - AluSg/x SINE Alu -15 297 134 2026 110 4 0 chr9 105885112 105885385 -36386059 - AluSx SINE Alu -16 296 23 195 175 25 0 chr9 105885385 105885425 -36386019 + MER5A DNA MER1_type 149 189 0 573 227 41 17 chr9 105885522 105885694 -36385750 - MER5B DNA MER1_type 0 178 3 418 247 0 0 chr9 105886902 105886995 -36384449 - L1ME LINE L1 -491 5673 5581 355 138 125 0 chr9 105887013 105887093 -36384351 - L1MD2 LINE L1 -318 6041 5952 1679 292 53 27 chr9 105887093 105887693 -36383751 - L1MDb LINE L1 -5788 621 6 1806 264 70 32 chr9 105887693 105889076 -36382368 + L1ME2 LINE L1 4679 6115 -49 25 65 0 0 chr9 105889368 105889414 -36382030 + AT_rich Low_complexity Low_complexity 1 46 0 254 123 88 18 chr9 105890031 105890088 -36381356 - HSMAR1 DNA Mariner 0 1287 1227 1077 169 0 0 chr9 105890372 105890544 -36380900 + L1PA15 LINE L1 5986 6157 -8 559 295 62 14 chr9 105890602 105890812 -36380632 + MIR SINE MIR 6 225 -37 27 62 0 0 chr9 105891586 105891634 -36379810 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr9 105892209 105892230 -36379214 + AT_rich Low_complexity Low_complexity 1 21 0 2990 245 87 28 chr9 105893385 105894209 -36377235 - L1MDb LINE L1 -3853 2227 1454 1727 142 61 10 chr9 105894209 105894505 -36376939 + AluSx SINE Alu 1 311 -1 2990 245 87 28 chr9 105894505 105895155 -36376289 - L1MDb LINE L1 -4626 1454 609 2375 77 0 0 chr9 105895172 105895470 -36375974 + AluY SINE Alu 1 298 -13 333 311 0 0 chr9 105895471 105895561 -36375883 + L1MC4 LINE L1 6614 6703 -1339 232 315 0 0 chr9 105895591 105895680 -36375764 + L1MC4 LINE L1 6614 6702 -1340 233 306 57 8 chr9 105895713 105895837 -36375607 - L1MDb LINE L1 -5477 593 464 208 216 0 0 chr9 105896218 105896255 -36375189 + polypurine Low_complexity Low_complexity 2 38 0 225 0 0 0 chr9 105897064 105897089 -36374355 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 4626 190 21 18 chr9 105897090 105897672 -36373772 - L1PB4 LINE L1 -2 6857 6278 2721 99 0 3 chr9 105897672 105898037 -36373407 + THE1B LTR MaLR 1 364 0 4626 190 21 18 chr9 105898037 105898847 -36372597 - L1PB4 LINE L1 -581 6278 5454 2182 170 34 30 chr9 105898847 105899396 -36372048 - MLT2A2 LTR ERVL 0 554 1 10096 232 24 18 chr9 105899396 105903408 -36368036 - L1PB4 LINE L1 -1391 5458 1336 342 284 0 0 chr9 105903388 105903476 -36367968 - L1PB4 LINE L1 -5280 1569 1482 * 257 405 13 19 chr9 105903501 105903812 -36367632 - L1PB4 LINE L1 -5301 1548 1240 720 332 65 38 chr9 105904534 105904983 -36366461 - L1PB4 LINE L1 -6379 471 11 50 71 0 0 chr9 105905068 105905167 -36366277 + AT_rich Low_complexity Low_complexity 1 99 0 29 28 0 0 chr9 105905909 105905945 -36365499 + AT_rich Low_complexity Low_complexity 1 36 0 276 338 40 27 chr9 105906409 105906557 -36364887 + L3 LINE CR1 342 491 -1086 528 219 25 17 chr9 105906562 105906681 -36364763 + FLAM_A SINE Alu 1 120 -13 3159 173 20 2 chr9 105907210 105907810 -36363634 - L1 LINE L1 -1239 4907 4297 4014 163 19 7 chr9 105907913 105908887 -36362557 + L1MA4 LINE L1 5000 5987 -313 426 203 40 0 chr9 105908892 105909040 -36362404 + (TA)n Simple_repeat Simple_repeat 2 155 0 249 344 0 0 chr9 105909050 105909140 -36362304 - L1MC4 LINE L1 -1339 6703 6614 246 284 0 0 chr9 105909140 105909221 -36362223 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 233 314 23 0 chr9 105909232 105909318 -36362126 - L1MC4 LINE L1 -1339 6703 6616 353 293 38 0 chr9 105909320 105909453 -36361991 + (TA)n Simple_repeat Simple_repeat 2 139 0 330 204 29 0 chr9 105909465 105909568 -36361876 + (TA)n Simple_repeat Simple_repeat 1 106 0 299 25 25 0 chr9 105909621 105909661 -36361783 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 361 38 25 chr9 105910015 105910173 -36361271 - MIR SINE MIR -102 160 1 23 68 0 0 chr9 105910217 105910261 -36361183 + AT_rich Low_complexity Low_complexity 1 44 0 246 265 103 52 chr9 105910279 105910415 -36361029 - MIR SINE MIR -44 218 76 352 428 35 23 chr9 105910817 105911074 -36360370 + L2 LINE L2 2977 3236 -36 243 0 0 0 chr9 105911239 105911266 -36360178 + (TA)n Simple_repeat Simple_repeat 1 27 0 2386 67 0 7 chr9 105911266 105911565 -36359879 - AluY SINE Alu -14 297 1 284 363 62 0 chr9 105912259 105912372 -36359072 - L2 LINE L2 0 3313 3194 519 279 20 45 chr9 105912381 105912582 -36358862 - MER45C DNA AcHobo 0 953 758 * 1014 321 85 74 chr9 105912574 105913030 -36358414 - MER45C DNA AcHobo -345 608 142 303 49 0 0 chr9 105913030 105913071 -36358373 + (CA)n Simple_repeat Simple_repeat 1 41 0 1014 321 85 74 chr9 105913071 105913212 -36358232 - MER45C DNA AcHobo -811 142 4 344 385 7 0 chr9 105913336 105913471 -36357973 - L2 LINE L2 -210 3062 2927 1980 109 3 14 chr9 105913849 105914133 -36357311 + AluSq SINE Alu 1 281 -32 203 56 56 0 chr9 105914133 105914169 -36357275 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 287 63 35 77 chr9 105914418 105914561 -36356883 + (TA)n Simple_repeat Simple_repeat 2 138 0 2434 43 0 10 chr9 105914885 105915186 -36356258 - AluY SINE Alu -13 298 1 25 51 0 0 chr9 105915813 105915852 -36355592 + AT_rich Low_complexity Low_complexity 1 39 0 214 294 28 18 chr9 105916157 105916266 -36355178 + MIR3 SINE MIR 69 178 -30 267 103 0 0 chr9 105916608 105916647 -36354797 + (CA)n Simple_repeat Simple_repeat 1 39 0 406 127 0 2 chr9 105917958 105918194 -36353250 + AluSx SINE Alu 23 293 -19 182 36 0 36 chr9 105918456 105918484 -36352960 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 660 295 149 23 chr9 105919914 105920256 -36351188 - L2 LINE L2 0 3313 2929 501 287 40 11 chr9 105920329 105920503 -36350941 + MER97c DNA MER1_type? 1 179 -911 883 326 23 16 chr9 105920558 105920868 -36350576 - L2 LINE L2 -475 2839 2528 5203 209 50 39 chr9 105920901 105922976 -36348468 - L1MB4 LINE L1 0 6180 4128 272 125 0 0 chr9 105922976 105923016 -36348428 - tRNA-Thr-ACT tRNA tRNA -37 40 1 5203 209 50 39 chr9 105923016 105923330 -36348114 - L1MB4 LINE L1 -2052 4128 3724 1827 172 65 6 chr9 105923330 105923684 -36347760 + THE1C LTR MaLR 1 375 0 5203 209 50 39 chr9 105923684 105923720 -36347724 - L1MB4 LINE L1 -2456 3724 3690 423 336 52 37 chr9 105923734 105924002 -36347442 - L2 LINE L2 -825 2489 2218 599 249 24 12 chr9 105924005 105924170 -36347274 + MER104 DNA Tc2 4 170 -10 806 323 115 10 chr9 105924180 105924570 -36346874 - L2 LINE L2 -1095 2219 1789 22 0 0 0 chr9 105925634 105925656 -36345788 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 105926713 105926734 -36344710 + AT_rich Low_complexity Low_complexity 1 21 0 410 275 124 39 chr9 105927390 105927568 -36343876 + MIR SINE MIR 43 235 -27 1984 108 56 17 chr9 105927623 105927911 -36343533 - AluSc SINE Alu -9 300 2 2095 97 42 0 chr9 105928802 105929090 -36342354 + AluSg SINE Alu 1 300 -10 214 211 14 42 chr9 105929274 105929345 -36342099 + (TA)n Simple_repeat Simple_repeat 2 70 0 29 47 0 0 chr9 105930677 105930720 -36340724 + AT_rich Low_complexity Low_complexity 1 43 0 405 0 0 0 chr9 105931038 105931083 -36340361 + (TA)n Simple_repeat Simple_repeat 1 45 0 27 0 0 0 chr9 105931287 105931314 -36340130 + AT_rich Low_complexity Low_complexity 1 27 0 200 295 66 0 chr9 105931645 105931706 -36339738 + L2 LINE L2 3203 3267 -5 363 240 149 19 chr9 105932541 105932749 -36338695 - L1ME4a LINE L1 -32 6089 5855 635 236 163 33 chr9 105932749 105933080 -36338364 - MLT1A2 LTR MaLR 0 374 1 217 184 20 0 chr9 105933548 105933597 -36337847 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 278 196 0 0 chr9 105933612 105933663 -36337781 + L1P LINE L1 4840 4890 -1256 209 414 14 14 chr9 105933711 105933856 -36337588 - MIR SINE MIR -114 148 4 295 100 0 0 chr9 105934045 105934085 -36337359 - LTR3b LTR ERVK 0 500 461 3597 105 6 4 chr9 105934086 105934582 -36336862 - LTR3b LTR ERVK -3 497 1 820 286 54 13 chr9 105935517 105935832 -36335612 + MER20B DNA MER1_type 6 333 -450 286 246 94 70 chr9 105935838 105936082 -36335362 + L1MC4a LINE L1 5799 6048 -1760 1346 268 62 5 chr9 105937186 105937607 -36333837 + L1MD3 LINE L1 7541 7985 -10 32632 61 9 0 chr9 105939017 105945096 -36326348 - L1PA5 LINE L1 -5 6149 3 4040 238 45 50 chr9 105945277 105946171 -36325273 - Charlie1a DNA MER1_type -1327 1434 548 2273 76 0 36 chr9 105946171 105946472 -36324972 + AluY SINE Alu 1 290 -21 4040 238 45 50 chr9 105946472 105947016 -36324428 - Charlie1a DNA MER1_type -2213 548 3 262 264 44 44 chr9 105947019 105947110 -36324334 - L2 LINE L2 -525 2789 2699 373 365 82 26 chr9 105947425 105947767 -36323677 - LTR33 LTR ERVL -149 372 12 2245 116 6 3 chr9 105947955 105948266 -36323178 + AluSx SINE Alu 1 312 0 22 0 0 0 chr9 105948271 105948293 -36323151 + AT_rich Low_complexity Low_complexity 1 22 0 400 145 121 0 chr9 105950943 105951026 -36320418 - L1MA4 LINE L1 -6 6294 6202 * 995 153 25 0 chr9 105951020 105951216 -36320228 + L1MA4 LINE L1 5956 6156 -144 234 91 0 0 chr9 105952711 105952744 -36318700 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 359 21 21 0 chr9 105953111 105953159 -36318285 + (GA)n Simple_repeat Simple_repeat 2 50 0 463 50 91 0 chr9 105953525 105953646 -36317798 + (TA)n Simple_repeat Simple_repeat 1 132 0 606 282 117 34 chr9 105953646 105954082 -36317362 + HAL1 LINE L1 1468 1939 -568 629 235 167 0 chr9 105954548 105954710 -36316734 - MER3 DNA MER1_type 0 209 21 1609 194 3 15 chr9 105954717 105955058 -36316386 + L1MB3 LINE L1 5830 6166 -17 23 0 0 0 chr9 105955058 105955081 -36316363 + AT_rich Low_complexity Low_complexity 1 23 0 267 175 0 0 chr9 105956739 105956796 -36314648 + (TA)n Simple_repeat Simple_repeat 2 58 0 275 358 17 17 chr9 105956829 105956949 -36314495 - MIR SINE MIR -113 149 30 11372 31 8 1 chr9 105958784 105960180 -36311264 - L1P LINE L1 -1764 4382 2977 2647 43 0 0 chr9 105960180 105960499 -36310945 + L1PA4 LINE L1 5830 6152 -3 23 0 0 0 chr9 105960948 105960971 -36310473 + AT_rich Low_complexity Low_complexity 1 23 0 312 250 0 15 chr9 105961644 105961712 -36309732 - MER91 DNA MER1_type -81 115 49 1785 173 28 0 chr9 105961779 105962102 -36309342 + L1MC1 LINE L1 5995 6326 -7 29 60 0 0 chr9 105962289 105962339 -36309105 + AT_rich Low_complexity Low_complexity 1 50 0 346 340 112 14 chr9 105962613 105962857 -36308587 - L2 LINE L2 -299 3014 2745 2524 99 30 0 chr9 105962993 105963357 -36308087 + THE1C LTR MaLR 1 375 0 493 219 13 13 chr9 105963582 105963737 -36307707 + CT-rich Low_complexity Low_complexity 2 156 0 207 327 64 55 chr9 105963801 105964003 -36307441 - L2 LINE L2 -1289 2025 1822 331 313 103 52 chr9 105964280 105964571 -36306873 + L1MEd LINE L1 338 643 -5476 1744 269 46 31 chr9 105964763 105965398 -36306046 + L1MCb LINE L1 2 645 -5400 879 216 74 23 chr9 105965444 105965720 -36305724 - LTR12 LTR ERV1 -255 459 181 1531 234 48 18 chr9 105965844 105966123 -36305321 + L1MCb LINE L1 665 967 -5078 3420 108 14 8 chr9 105966123 105966633 -36304811 + LTR10D LTR ERV1 1 513 0 1531 234 48 18 chr9 105966633 105966852 -36304592 + L1MCb LINE L1 967 1178 -4867 1109 174 39 12 chr9 105966868 105967303 -36304141 - LTR54 LTR ERV1 0 510 1 2264 167 0 50 chr9 105967303 105967746 -36303698 - Tigger7 DNA MER2_type -10 2577 2157 407 183 14 0 chr9 105967757 105967828 -36303616 - Tigger7 DNA MER2_type -267 72 1 1583 252 74 63 chr9 105967831 105968456 -36302988 + L1MCb LINE L1 1183 1799 -4946 2383 137 3 8 chr9 105968456 105968822 -36302622 - THE1B LTR MaLR 0 364 1 9523 119 42 41 chr9 105968824 105970400 -36301044 - THE1B-int LTR MaLR -2 1578 2 2264 146 8 3 chr9 105970401 105970763 -36300681 - THE1B LTR MaLR 0 364 1 1583 252 74 63 chr9 105970763 105971164 -36300280 + L1MCb LINE L1 1798 2427 -4318 13981 198 80 15 chr9 105971181 105977636 -36293808 - L1PB1 LINE L1 -1 6866 6 765 260 45 31 chr9 105977669 105978139 -36293305 + L1MCb LINE L1 2435 2872 -3692 209 186 43 0 chr9 105978148 105978218 -36293226 + (TA)n Simple_repeat Simple_repeat 1 73 0 633 282 39 14 chr9 105978251 105978503 -36292941 - MLT1D LTR MaLR -37 468 225 969 165 24 6 chr9 105978511 105978681 -36292763 + MER49 LTR ERV1 5 177 -746 1375 233 26 21 chr9 105978682 105979021 -36292423 + MER4D LTR ERV1 563 903 0 658 223 9 96 chr9 105979021 105979250 -36292194 - MLT1D LTR MaLR -275 230 22 1023 315 97 57 chr9 105979263 105980203 -36291241 - MLT1D-int LTR MaLR 0 1371 395 * 1418 225 102 41 chr9 105980202 105980691 -36290753 - L1MCa LINE L1 -5901 525 7 967 92 8 0 chr9 105980691 105980822 -36290622 - AluY SINE Alu -179 132 1 2089 120 0 3 chr9 105981027 105981334 -36290110 - AluSx SINE Alu 0 306 1 1639 202 115 0 chr9 105982152 105982499 -36288945 + MER47B DNA MER2_type 1 387 -31 3027 98 5 0 chr9 105982566 105982994 -36288450 - L1PA10 LINE L1 -5 6163 5734 201 121 0 0 chr9 105983328 105983361 -36288083 + (TTG)n Simple_repeat Simple_repeat 2 34 0 341 257 29 9 chr9 105983939 105984044 -36287400 + CT-rich Low_complexity Low_complexity 2 108 0 368 277 23 40 chr9 105984436 105984613 -36286831 - L1ME LINE L1 -710 5454 5281 757 174 36 0 chr9 105986893 105987060 -36284384 + L1MA5 LINE L1 6128 6300 0 268 349 12 0 chr9 105987205 105987288 -36284156 + L2 LINE L2 3189 3272 0 482 301 111 27 chr9 105987551 105987813 -36283631 + LTR33 LTR ERVL 1 284 -237 1779 154 66 36 chr9 105988407 105988771 -36282673 + THE1C LTR MaLR 1 375 0 1203 130 0 0 chr9 105988773 105988965 -36282479 + THE1C-int LTR MaLR 3 194 -1386 3526 115 211 45 chr9 105988965 105990245 -36281199 + pTR5 LTR ERV1 746 2606 0 8072 134 20 46 chr9 105990245 105991675 -36279769 + THE1C-int LTR MaLR 188 1580 0 1534 171 63 30 chr9 105991675 105992038 -36279406 + THE1C LTR MaLR 1 375 0 204 276 66 0 chr9 105993878 105993954 -36277490 - MIR SINE MIR -64 198 118 198 0 0 0 chr9 105995353 105995375 -36276069 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 52 0 0 0 chr9 105995382 105995434 -36276010 + AT_rich Low_complexity Low_complexity 1 52 0 7414 37 10 0 chr9 105995434 105996598 -36274846 - L1PA3 LINE L1 -3 6152 4985 6116 33 0 0 chr9 105996598 105997333 -36274111 + L1PA3 LINE L1 4252 4986 -1160 2092 97 24 0 chr9 105997549 105997839 -36273605 + AluSx SINE Alu 1 297 -15 2069 119 36 0 chr9 106000917 106001219 -36270225 + AluSq SINE Alu 1 313 0 1008 180 41 68 chr9 106001606 106002041 -36269403 - MER51A LTR ERV1 0 634 1 821 203 124 58 chr9 106002242 106002484 -36268960 - MER66A LTR ERV1 0 478 221 385 224 9 81 chr9 106002643 106002809 -36268635 - MER66A LTR ERV1 -248 303 97 186 259 52 0 chr9 106004055 106004113 -36267331 - L2 LINE L2 -3 3310 3250 30 27 0 0 chr9 106004346 106004383 -36267061 + AT_rich Low_complexity Low_complexity 1 37 0 1907 156 150 3 chr9 106005120 106005493 -36265951 - MSTA LTR MaLR 0 428 1 356 381 21 10 chr9 106005542 106005736 -36265708 + MER117 DNA MER1_type 2 197 0 2811 181 75 5 chr9 106006108 106006681 -36264763 - Tigger3(Golem) DNA MER2_type 0 3028 2412 1684 197 3 7 chr9 106006681 106006980 -36264464 + AluJo SINE Alu 5 302 -10 2811 181 75 5 chr9 106006980 106006991 -36264453 - Tigger3(Golem) DNA MER2_type -616 2412 2403 302 260 13 0 chr9 106006991 106007068 -36264376 - L1MC4 LINE L1 -1351 6691 6614 346 311 102 51 chr9 106007233 106007664 -36263780 - MLT1H1 LTR MaLR -8 547 95 3671 128 52 59 chr9 106007842 106008605 -36262839 - L1MA7 LINE L1 -5 6286 5529 318 360 40 55 chr9 106009832 106009888 -36261556 - ERVL LTR ERVL -5071 693 638 612 144 101 0 chr9 106009888 106010027 -36261417 + L1MA4A LINE L1 6149 6301 -2 318 360 40 55 chr9 106010027 106010367 -36261077 - ERVL LTR ERVL -5126 638 303 599 335 73 16 chr9 106010416 106010664 -36260780 - MLT2E LTR ERVL -270 358 97 2092 108 10 3 chr9 106010854 106011142 -36260302 - AluSp SINE Alu -23 290 1 222 136 0 0 chr9 106011495 106011539 -36259905 + (TG)n Simple_repeat Simple_repeat 2 45 0 860 188 19 42 chr9 106012459 106012672 -36258772 - MLT1B LTR MaLR -180 210 3 215 307 94 8 chr9 106012816 106012943 -36258501 - MIR SINE MIR -74 188 51 182 331 77 59 chr9 106013922 106014091 -36257353 - MIR SINE MIR -13 249 78 262 307 80 4 chr9 106014170 106014309 -36257135 + MIR SINE MIR 92 235 -27 27 49 0 0 chr9 106014459 106014500 -36256944 + AT_rich Low_complexity Low_complexity 1 41 0 8556 102 35 22 chr9 106014759 106015394 -36256050 + HSMAR1 DNA Mariner 1 627 -660 911 82 16 93 chr9 106015394 106015576 -36255868 + L1PA10 LINE L1 5997 6164 -4 8556 102 35 22 chr9 106015576 106016210 -36255234 + HSMAR1 DNA Mariner 627 1286 -1 407 309 132 34 chr9 106016887 106017459 -36253985 + L1M4 LINE L1 3059 3684 -2462 1885 240 141 39 chr9 106017459 106018317 -36253127 + L1ME2 LINE L1 3028 4080 -2066 2334 88 0 0 chr9 106018317 106018624 -36252820 + AluSc SINE Alu 1 307 -2 1885 240 141 39 chr9 106018624 106019139 -36252305 + L1ME2 LINE L1 4080 4541 -1605 2283 87 0 3 chr9 106019152 106019452 -36251992 + AluSx SINE Alu 1 299 -13 3032 101 7 2 chr9 106019452 106019888 -36251556 + L1PA14 LINE L1 5289 5726 -435 3831 130 73 43 chr9 106019888 106020650 -36250794 - LTR1 LTR ERV1 0 785 1 2888 73 7 37 chr9 106020693 106021051 -36250393 + L1PA14 LINE L1 5723 6069 -92 2201 128 0 0 chr9 106021051 106021356 -36250088 + AluSx SINE Alu 3 307 -5 2888 73 7 37 chr9 106021356 106021407 -36250037 + L1PA14 LINE L1 6069 6120 -41 342 0 0 0 chr9 106021493 106021531 -36249913 + (TG)n Simple_repeat Simple_repeat 2 39 0 739 272 21 28 chr9 106021536 106021823 -36249621 + L1ME2 LINE L1 4620 4904 -1242 * 7065 36 1 0 chr9 106021819 106022661 -36248783 - L1PA3 LINE L1 0 6155 5313 1918 270 50 39 chr9 106022660 106023465 -36247979 + L1ME2 LINE L1 4888 5713 -451 * 930 177 0 6 chr9 106023465 106023629 -36247815 - FAM SINE Alu -9 166 4 1918 270 50 39 chr9 106023629 106024078 -36247366 + L1ME2 LINE L1 5713 6155 -9 468 286 45 26 chr9 106024109 106024378 -36247066 + L1MC4 LINE L1 7018 7291 -751 2285 179 62 28 chr9 106024408 106024516 -36246928 + MER44D DNA MER2_type 1 104 -2383 1702 149 16 39 chr9 106024516 106024824 -36246620 + AluJo SINE Alu 6 306 -6 2285 179 62 28 chr9 106024824 106025247 -36246197 + MER44D DNA MER2_type 104 605 0 1500 306 68 26 chr9 106025260 106025829 -36245615 + MLT1E LTR MaLR 1 593 0 1023 309 93 30 chr9 106025830 106026465 -36244979 + L1MC4 LINE L1 7363 8037 -5 191 316 33 116 chr9 106027531 106027746 -36243698 + MIR SINE MIR 41 237 -25 189 254 130 59 chr9 106027719 106027888 -36243556 - MIR SINE MIR -3 259 79 * 287 174 83 35 chr9 106027926 106028070 -36243374 + (TAAA)n Simple_repeat Simple_repeat 4 154 0 533 352 92 20 chr9 106028074 106028432 -36243012 - L2 LINE L2 -12 3301 2918 228 250 29 0 chr9 106028775 106028843 -36242601 - MIR SINE MIR -26 236 167 22 0 0 0 chr9 106028876 106028898 -36242546 + AT_rich Low_complexity Low_complexity 1 22 0 297 235 47 35 chr9 106029198 106029283 -36242161 - MIR SINE MIR -87 175 90 182 380 51 0 chr9 106030192 106030271 -36241173 - L2 LINE L2 0 3313 3231 180 302 105 23 chr9 106030670 106030756 -36240688 - L3b LINE CR1 -261 1322 1230 238 343 15 4 chr9 106031231 106031369 -36240075 - MIR SINE MIR -63 145 11 4820 167 48 28 chr9 106033948 106034430 -36237014 + L1MA7 LINE L1 4521 4992 -1299 1875 199 49 7 chr9 106034430 106034837 -36236607 + MSTB LTR MaLR 1 424 -2 4820 167 48 28 chr9 106034837 106036081 -36235363 + L1MA7 LINE L1 4992 6289 -2 180 0 0 0 chr9 106037501 106037521 -36233923 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr9 106037952 106037980 -36233464 + AT_rich Low_complexity Low_complexity 1 28 0 591 287 24 44 chr9 106038095 106038388 -36233056 + L1PA12 LINE L1 12 298 -7283 253 371 38 0 chr9 106039210 106039342 -36232102 + L1PA12 LINE L1 2183 2319 -5262 10268 202 20 30 chr9 106039363 106040809 -36230635 + L1PA15 LINE L1 1228 2688 -4128 2011 128 0 14 chr9 106040809 106041097 -36230347 + AluSx SINE Alu 11 294 -18 10268 202 20 30 chr9 106041097 106041377 -36230067 + L1PA15 LINE L1 2688 2969 -3847 2794 19 0 0 chr9 106041377 106041688 -36229756 + AluY SINE Alu 1 311 0 10268 202 20 30 chr9 106041688 106045590 -36225854 + L1PA15 LINE L1 2969 6810 -6 287 418 34 10 chr9 106046225 106046431 -36225013 + L2 LINE L2 2838 3048 -224 217 419 40 0 chr9 106046552 106046676 -36224768 + L2 LINE L2 3132 3260 -12 1590 114 61 42 chr9 106047565 106047828 -36223616 - AluSx SINE Alu -44 268 1 5368 238 69 39 chr9 106047828 106049647 -36221797 - L1M4c LINE L1 -4788 1858 5 2191 304 42 57 chr9 106049634 106050580 -36220864 - L1M4b LINE L1 -5916 943 12 * 230 383 37 28 chr9 106050819 106050926 -36220518 + L2 LINE L2 3125 3232 -40 272 379 43 17 chr9 106051012 106051247 -36220197 + MIR SINE MIR 7 247 -15 24 0 0 0 chr9 106051545 106051569 -36219875 + AT_rich Low_complexity Low_complexity 1 24 0 890 155 35 60 chr9 106051997 106052229 -36219215 - AluJo SINE Alu 0 312 87 462 169 0 0 chr9 106053720 106053809 -36217635 + GA-rich Low_complexity Low_complexity 2 90 0 2600 251 53 89 chr9 106054541 106055704 -36215740 + L1M4 LINE L1 15 1136 -5406 1039 43 0 36 chr9 106055704 106055842 -36215602 + AluY SINE Alu 172 304 -7 1852 260 61 12 chr9 106055845 106056595 -36214849 + L1M4 LINE L1 1134 1918 -4728 1020 211 119 18 chr9 106056574 106056694 -36214750 + L1MC3 LINE L1 7236 7342 -941 * 293 0 27 0 chr9 106056694 106056731 -36214713 + (CA)n Simple_repeat Simple_repeat 2 39 0 1020 211 119 18 chr9 106056731 106056937 -36214507 + L1MC3 LINE L1 7342 7595 -688 322 302 9 26 chr9 106056937 106057053 -36214391 + MLT1F1 LTR MaLR 35 148 -419 835 261 15 0 chr9 106057053 106057256 -36214188 + L1MC3 LINE L1 7712 7917 -366 481 191 45 0 chr9 106057254 106057364 -36214080 + L1MC3 LINE L1 7651 7765 -20 * 2904 260 67 22 chr9 106057374 106058870 -36212574 + L1M4 LINE L1 2062 3590 -3054 13612 193 51 55 chr9 106058884 106064446 -36206998 + L1PA13 LINE L1 2 5528 -1269 2320 132 26 0 chr9 106064446 106064824 -36206620 + L1PA13 LINE L1 6420 6809 -5 31 0 0 0 chr9 106064824 106064855 -36206589 + AT_rich Low_complexity Low_complexity 1 31 0 361 248 41 8 chr9 106064855 106064976 -36206468 + L1M4 LINE L1 3572 3696 -2948 980 240 87 8 chr9 106064977 106065344 -36206100 - L1M4 LINE L1 -1560 4586 4191 2015 216 82 0 chr9 106065521 106065994 -36205450 - MLT2B1 LTR ERVL -8 512 1 1229 67 0 18 chr9 106066772 106066962 -36204482 - AluY SINE Alu 0 311 125 2252 52 0 0 chr9 106066973 106067275 -36204169 - AluY SINE Alu 0 315 14 323 264 7 0 chr9 106069666 106069806 -36201638 + (TA)n Simple_repeat Simple_repeat 2 142 0 365 245 46 73 chr9 106070350 106070701 -36200743 - L2 LINE L2 0 3313 2827 1582 178 22 4 chr9 106070839 106071114 -36200330 - AluSq SINE Alu -25 288 9 307 185 11 54 chr9 106071136 106071228 -36200216 + L1MC4 LINE L1 6614 6701 -1341 189 214 0 0 chr9 106071249 106071291 -36200153 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 509 303 139 31 chr9 106071462 106072327 -36199117 + L1ME LINE L1 2555 3512 -2634 351 252 44 15 chr9 106072345 106072480 -36198964 + L1ME LINE L1 5159 5297 -849 1428 248 77 26 chr9 106072520 106073024 -36198420 + L1ME2 LINE L1 5514 6043 -121 1907 119 7 40 chr9 106073252 106073554 -36197890 + AluSq SINE Alu 1 292 -21 277 271 107 57 chr9 106073692 106073869 -36197575 - MIR SINE MIR -51 211 26 304 308 154 19 chr9 106074068 106074224 -36197220 + MER5B DNA MER1_type 2 178 0 2102 121 0 0 chr9 106074455 106074753 -36196691 - AluSx SINE Alu -14 298 1 205 27 81 0 chr9 106075648 106075685 -36195759 + T-rich Low_complexity Low_complexity 1 40 0 903 143 0 0 chr9 106075699 106075839 -36195605 - AluJb SINE Alu -45 267 128 2383 80 6 0 chr9 106075839 106076150 -36195294 - AluSp SINE Alu 0 313 1 2049 137 0 3 chr9 106076233 106076525 -36194919 - AluSq SINE Alu -21 292 2 21 0 0 0 chr9 106077568 106077589 -36193855 + AT_rich Low_complexity Low_complexity 1 21 0 354 236 59 61 chr9 106077884 106078072 -36193372 + L1ME LINE L1 5477 5661 -503 208 158 26 0 chr9 106078150 106078188 -36193256 - MER5A DNA MER1_type -120 69 31 22 0 0 0 chr9 106078751 106078773 -36192671 + AT_rich Low_complexity Low_complexity 1 22 0 3321 203 43 26 chr9 106078786 106079490 -36191954 + L1MA4 LINE L1 1 716 -4612 1512 106 35 4 chr9 106079504 106079731 -36191713 + L1PA13 LINE L1 5866 6099 -64 12986 206 45 16 chr9 106079792 106085334 -36186110 + L1MA4 LINE L1 772 6477 -5 1750 142 118 9 chr9 106085916 106086254 -36185190 - THE1C LTR MaLR 0 375 1 9020 137 61 11 chr9 106086254 106087759 -36183685 - THE1C-int LTR MaLR 0 1580 1 1618 192 47 16 chr9 106087759 106088123 -36183321 - THE1C LTR MaLR 0 375 1 218 152 30 61 chr9 106089231 106089297 -36182147 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 246 254 76 59 chr9 106089896 106090014 -36181430 + L1ME LINE L1 5542 5661 -460 24 0 0 0 chr9 106090961 106090985 -36180459 + AT_rich Low_complexity Low_complexity 1 24 0 897 158 0 0 chr9 106091560 106091699 -36179745 - FLAM_C SINE Alu -4 139 1 4785 170 85 36 chr9 106091766 106092738 -36178706 + LTR28 LTR ERV1 1 1020 0 485 239 36 89 chr9 106092882 106093068 -36178376 + MIR SINE MIR 36 210 -52 3540 151 12 25 chr9 106094556 106095487 -36175957 + L1MA5 LINE L1 4942 5854 -446 357 261 99 56 chr9 106096741 106096902 -36174542 - L1MC/D LINE L1 -2205 5603 5436 31 26 0 0 chr9 106097412 106097450 -36173994 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr9 106097771 106097794 -36173650 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2280 47 0 0 chr9 106097794 106098071 -36173373 - L1PA4 LINE L1 -11 6144 5868 6519 31 0 0 chr9 106098171 106098954 -36172490 - L1PA4 LINE L1 -923 5223 4441 781 323 107 10 chr9 106099783 106100195 -36171249 - LTR16B LTR ERVL -12 452 1 280 319 33 33 chr9 106100369 106100551 -36170893 + MLT1L LTR MaLR 155 336 -279 25 31 0 0 chr9 106100769 106100801 -36170643 + AT_rich Low_complexity Low_complexity 1 32 0 295 299 35 11 chr9 106101294 106101381 -36170063 + MER5A DNA MER1_type 30 118 -71 187 326 32 21 chr9 106101303 106101398 -36170046 - MER5A DNA MER1_type -29 160 65 * 24 32 0 0 chr9 106101416 106101447 -36169997 + AT_rich Low_complexity Low_complexity 1 31 0 542 278 137 13 chr9 106102498 106102725 -36168719 - MIR SINE MIR -7 255 1 1942 222 88 79 chr9 106103640 106104459 -36166985 + LTR1B LTR ERV1 1 826 0 230 373 102 0 chr9 106105342 106105460 -36165984 - L2 LINE L2 -4 3268 3139 2213 152 43 56 chr9 106105918 106106385 -36165059 + LOR1b LTR ERV1 1 461 0 214 300 50 17 chr9 106107003 106107063 -36164381 + L2 LINE L2 3207 3268 -4 245 351 48 48 chr9 106107155 106107204 -36164240 + L2 LINE L2 1287 1335 -1979 1213 175 4 13 chr9 106107204 106107432 -36164012 + L1PA15 LINE L1 5935 6160 -5 245 351 48 48 chr9 106107432 106107715 -36163729 + L2 LINE L2 1334 1619 -1695 349 282 180 43 chr9 106108513 106108974 -36162470 - L1ME4a LINE L1 -13 6108 5585 4033 153 108 49 chr9 106109082 106110148 -36161296 + Tigger3b DNA MER2_type 1 1231 0 2272 166 81 4 chr9 106110558 106111039 -36160405 - L1MA8 LINE L1 0 6291 5774 192 40 0 0 chr9 106111060 106111085 -36160359 + (TTG)n Simple_repeat Simple_repeat 3 27 0 43631 42 2 2 chr9 106111086 106117239 -36154205 - L1PA3 LINE L1 -3 6152 1 3970 160 30 24 chr9 106117242 106118391 -36153053 - L1MA8 LINE L1 -532 5759 4596 2450 251 116 14 chr9 106118440 106119904 -36151540 - L1M2 LINE L1 -4230 2877 1265 986 311 42 16 chr9 106120698 106121145 -36150299 - LTR16B LTR ERVL -4 460 2 438 288 27 55 chr9 106123221 106123367 -36148077 - L2 LINE L2 -15 3257 3116 184 259 121 0 chr9 106123911 106123969 -36147475 - MIR SINE MIR -72 136 71 37 0 0 0 chr9 106124151 106124188 -36147256 + AT_rich Low_complexity Low_complexity 1 37 0 671 150 3 54 chr9 106124460 106124776 -36146668 + (TA)n Simple_repeat Simple_repeat 1 300 0 308 156 0 62 chr9 106124778 106124842 -36146602 - L1MC4 LINE L1 -1339 6703 6644 413 275 66 50 chr9 106124973 106125155 -36146289 + MLT1J LTR MaLR 16 200 -311 21 0 0 0 chr9 106125229 106125250 -36146194 + AT_rich Low_complexity Low_complexity 1 21 0 1564 184 3 21 chr9 106125324 106125612 -36145832 + AluSx SINE Alu 1 283 -29 6941 125 6 4 chr9 106125612 106126796 -36144648 + L1MA1 LINE L1 5113 6302 0 32 0 0 0 chr9 106126796 106126828 -36144616 + AT_rich Low_complexity Low_complexity 1 32 0 3713 154 53 45 chr9 106126835 106126877 -36144567 + L1MA8 LINE L1 5474 5514 -777 2475 128 3 3 chr9 106126877 106127252 -36144192 - THE1C LTR MaLR 0 375 1 3713 154 53 45 chr9 106127252 106127388 -36144056 + L1MA8 LINE L1 5514 5647 -644 2508 158 9 23 chr9 106127388 106127826 -36143618 + Tigger2a DNA MER2_type 2 433 -1 3713 154 53 45 chr9 106127826 106128452 -36142992 + L1MA8 LINE L1 5647 6286 -5 23 54 0 0 chr9 106128678 106128715 -36142729 + AT_rich Low_complexity Low_complexity 1 37 0 34 0 0 0 chr9 106128928 106128962 -36142482 + AT_rich Low_complexity Low_complexity 1 34 0 2295 89 3 0 chr9 106129205 106129496 -36141948 + AluSp SINE Alu 7 298 -15 918 295 216 10 chr9 106129918 106130419 -36141025 - L2 LINE L2 -1715 1599 996 1514 213 22 25 chr9 106130723 106131089 -36140355 - MLT1A1 LTR MaLR 0 365 1 243 331 131 54 chr9 106131108 106131368 -36140076 + L2 LINE L2 3020 3299 -14 23 0 0 0 chr9 106131583 106131606 -36139838 + AT_rich Low_complexity Low_complexity 1 23 0 237 303 97 18 chr9 106132337 106132502 -36138942 + MIR SINE MIR 85 262 0 585 297 141 39 chr9 106132687 106132970 -36138474 - MLT1H LTR MaLR -107 442 131 25 31 0 0 chr9 106133114 106133146 -36138298 + AT_rich Low_complexity Low_complexity 1 32 0 236 417 66 0 chr9 106133660 106133811 -36137633 + MIR3 SINE MIR 33 193 -15 388 276 97 0 chr9 106133898 106134032 -36137412 + MIR SINE MIR 80 226 -36 498 336 117 16 chr9 106134084 106134527 -36136917 + LTR33 LTR ERVL 23 510 -11 2075 125 0 19 chr9 106135968 106136280 -36135164 + AluSg SINE Alu 3 308 -2 279 0 0 0 chr9 106136280 106136311 -36135133 + (TA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr9 106136361 106136382 -36135062 + AT_rich Low_complexity Low_complexity 1 21 0 183 303 91 0 chr9 106137236 106137302 -36134142 + L2 LINE L2 3210 3281 -32 248 267 0 0 chr9 106137624 106137684 -36133760 + (TA)n Simple_repeat Simple_repeat 2 61 0 2108 110 0 10 chr9 106137720 106138041 -36133403 + AluSx SINE Alu 1 318 0 567 162 0 0 chr9 106138251 106138356 -36133088 + L1MA9 LINE L1 6207 6311 -1 229 200 0 50 chr9 106138547 106138607 -36132837 + L2 LINE L2 3257 3313 0 331 288 146 41 chr9 106138777 106138967 -36132477 + L1ME3A LINE L1 5579 5812 -358 288 77 0 0 chr9 106138967 106139006 -36132438 + (CA)n Simple_repeat Simple_repeat 2 40 0 331 288 146 41 chr9 106139006 106139110 -36132334 + L1ME3A LINE L1 5812 5904 -266 943 71 0 0 chr9 106139226 106139352 -36132092 + L1PA5 LINE L1 6029 6154 0 2321 181 109 86 chr9 106140878 106141685 -36129759 + LTR1B LTR ERV1 1 826 0 21 36 0 0 chr9 106142890 106142918 -36128526 + AT_rich Low_complexity Low_complexity 1 28 0 403 255 53 0 chr9 106144611 106144705 -36126739 - MER63 DNA MER1_type -312 750 26 2273 140 89 5 chr9 106145723 106146116 -36125328 - MSTB LTR MaLR 0 426 1 451 261 106 19 chr9 106146644 106146769 -36124675 - L2 LINE L2 0 3313 3170 216 97 0 0 chr9 106146769 106146800 -36124644 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 451 261 106 19 chr9 106146800 106146835 -36124609 - L2 LINE L2 -143 3170 3139 2160 222 74 36 chr9 106147156 106147723 -36123721 - MLT1E LTR MaLR 0 593 3 227 211 58 0 chr9 106147723 106147775 -36123669 - MIR SINE MIR -62 200 146 443 305 24 30 chr9 106148185 106148352 -36123092 + L2 LINE L2 3142 3307 -6 26 50 0 0 chr9 106148364 106148404 -36123040 + AT_rich Low_complexity Low_complexity 1 40 0 2276 66 0 3 chr9 106149297 106149608 -36121836 + AluY SINE Alu 1 310 0 21 36 0 0 chr9 106149832 106149860 -36121584 + AT_rich Low_complexity Low_complexity 1 28 0 197 88 281 35 chr9 106150058 106150115 -36121329 - MIR SINE MIR -49 213 143 2249 96 0 13 chr9 106150260 106150573 -36120871 - AluSg SINE Alu -1 309 1 440 335 29 6 chr9 106151570 106151740 -36119704 - L2 LINE L2 0 3313 3140 239 254 0 0 chr9 106152686 106152749 -36118695 + L1ME3 LINE L1 5880 5942 -228 447 286 31 6 chr9 106152780 106152941 -36118503 + L1ME3 LINE L1 5996 6160 -2 224 176 0 39 chr9 106152953 106153004 -36118440 + GA-rich Low_complexity Low_complexity 4 52 0 244 261 0 14 chr9 106153096 106153165 -36118279 + MLT1K LTR MaLR 513 580 -8 34 42 0 0 chr9 106153216 106153264 -36118180 + AT_rich Low_complexity Low_complexity 1 48 0 33 71 0 0 chr9 106153526 106153582 -36117862 + AT_rich Low_complexity Low_complexity 1 56 0 1247 228 62 16 chr9 106153673 106154108 -36117336 + L1M4 LINE L1 4408 4862 -1284 2899 26 0 0 chr9 106155276 106155620 -36115824 - L1P LINE L1 -1545 4601 4258 7575 29 1 0 chr9 106155620 106156725 -36114719 + L1PA4 LINE L1 5050 6155 0 2188 120 0 0 chr9 106158460 106158760 -36112684 - AluSx SINE Alu -12 300 1 761 284 61 4 chr9 106159541 106159770 -36111674 + MIR SINE MIR 20 261 -1 1245 218 33 22 chr9 106160384 106161564 -36109880 + L1MB1 LINE L1 2634 6017 -151 1560 244 23 3 chr9 106161564 106161908 -36109536 - MLT1A1 LTR MaLR 0 365 15 1601 166 86 20 chr9 106161908 106162258 -36109186 + THE1C LTR MaLR 1 373 -2 499 159 9 28 chr9 106162280 106162387 -36109057 + L1MB1 LINE L1 6014 6118 -50 1642 148 164 32 chr9 106162460 106162838 -36108606 + MSTA LTR MaLR 1 428 0 9419 140 6 35 chr9 106162840 106164466 -36106978 + MSTA-int LTR MaLR 3 1580 0 1607 184 152 11 chr9 106164466 106164841 -36106603 + MSTA LTR MaLR 1 428 0 243 246 79 56 chr9 106165456 106165582 -36105862 - MLT1I LTR MaLR -6 403 275 421 288 25 23 chr9 106165645 106165793 -36105651 - MLT1I LTR MaLR -269 140 3 204 135 0 0 chr9 106166843 106166880 -36104564 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1556 182 19 29 chr9 106166927 106167240 -36104204 + MER44D DNA MER2_type 81 445 -160 * 3357 216 10 26 chr9 106167237 106167930 -36103514 - Tigger7 DNA MER2_type -1803 684 3 432 228 9 0 chr9 106167933 106168047 -36103397 + L1M4 LINE L1 3340 3454 -2692 1307 237 21 28 chr9 106168061 106168449 -36102995 + L1M4 LINE L1 3554 3938 -2208 584 260 0 52 chr9 106168611 106168784 -36102660 + L1PA13 LINE L1 4 167 -6620 23 0 0 0 chr9 106168899 106168922 -36102522 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr9 106169025 106169047 -36102397 + AT_rich Low_complexity Low_complexity 1 22 0 36 87 0 0 chr9 106169085 106169177 -36102267 + AT_rich Low_complexity Low_complexity 1 92 0 269 0 0 0 chr9 106169418 106169457 -36101987 - L1PA4 LINE L1 0 6155 6117 21 36 0 0 chr9 106170258 106170286 -36101158 + AT_rich Low_complexity Low_complexity 1 28 0 206 341 134 0 chr9 106170614 106170696 -36100748 + L2 LINE L2 3179 3271 -42 383 196 42 24 chr9 106170864 106171032 -36100412 + (TA)n Simple_repeat Simple_repeat 2 172 0 4347 179 40 14 chr9 106171081 106171967 -36099477 + L1MA8 LINE L1 5371 6279 -12 1107 323 117 6 chr9 106171996 106172467 -36098977 - L2 LINE L2 -358 2956 2434 219 69 0 0 chr9 106173371 106173400 -36098044 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 56 0 0 chr9 106173743 106173779 -36097665 + AT_rich Low_complexity Low_complexity 1 36 0 275 180 0 0 chr9 106174077 106174138 -36097306 + L1MC4 LINE L1 6648 6708 -1334 26 64 0 0 chr9 106174189 106174236 -36097208 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr9 106175466 106175496 -36095948 + AT_rich Low_complexity Low_complexity 1 30 0 267 217 0 0 chr9 106175529 106175589 -36095855 + (CA)n Simple_repeat Simple_repeat 1 60 0 224 197 0 16 chr9 106175574 106175635 -36095809 + (TA)n Simple_repeat Simple_repeat 2 61 0 * 698 298 17 30 chr9 106175822 106176057 -36095387 - MIR SINE MIR -1 261 30 35 54 0 0 chr9 106176074 106176130 -36095314 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr9 106176582 106176611 -36094833 + AT_rich Low_complexity Low_complexity 1 29 0 2159 105 0 0 chr9 106177461 106177746 -36093698 + AluSx SINE Alu 14 298 -14 581 229 21 21 chr9 106177750 106177894 -36093550 - MER5A DNA MER1_type -45 144 1 264 271 62 0 chr9 106179320 106179416 -36092028 - L1MC4 LINE L1 -2 8040 7939 1455 269 67 13 chr9 106179608 106180072 -36091372 - L1MC4 LINE L1 -388 7654 7166 1454 232 19 15 chr9 106180077 106180379 -36091065 - L1MC4 LINE L1 -890 7003 6631 410 96 14 0 chr9 106180379 106180452 -36090992 + (TA)n Simple_repeat Simple_repeat 1 74 0 1454 232 19 15 chr9 106180452 106180549 -36090895 - L1MC4 LINE L1 -1262 6631 6536 687 313 62 9 chr9 106181770 106182218 -36089226 - L1MEc LINE L1 -4007 3115 2644 266 281 47 0 chr9 106182343 106182407 -36089037 - L1MEc LINE L1 -5132 1291 1225 1969 179 39 73 chr9 106182977 106183497 -36087947 - MLT1D LTR MaLR -2 503 2 200 35 35 0 chr9 106184174 106184203 -36087241 + (TA)n Simple_repeat Simple_repeat 2 31 0 253 336 99 30 chr9 106184269 106184400 -36087044 - L1MEc LINE L1 -5989 434 295 1700 138 4 4 chr9 106185736 106185989 -36085455 + AluSx SINE Alu 27 279 -33 582 54 54 0 chr9 106185990 106186083 -36085361 + GA-rich Low_complexity Low_complexity 3 100 0 276 259 378 0 chr9 106186949 106187084 -36084360 - MER5A DNA MER1_type 0 189 4 1775 145 148 19 chr9 106187210 106187589 -36083855 + MSTA LTR MaLR 1 428 0 27 0 0 0 chr9 106188621 106188648 -36082796 + AT_rich Low_complexity Low_complexity 1 27 0 1777 185 116 69 chr9 106189253 106189745 -36081699 - MLT2B2 LTR ERVL 0 515 1 370 320 58 26 chr9 106189927 106190083 -36081361 + L2 LINE L2 2924 3084 -188 327 301 57 24 chr9 106190141 106190264 -36081180 + MIR SINE MIR 25 151 -111 225 235 314 0 chr9 106190425 106190527 -36080917 + L2 LINE L2 3138 3271 -1 786 186 198 12 chr9 106192142 106192394 -36079050 + MER33 DNA MER1_type 4 302 -22 2382 93 0 0 chr9 106192792 106193092 -36078352 + AluSg SINE Alu 1 300 -10 438 165 0 0 chr9 106194021 106194100 -36077344 + CT-rich Low_complexity Low_complexity 1 79 0 1935 147 7 0 chr9 106194100 106194392 -36077052 - AluSx SINE Alu -15 297 4 307 332 95 21 chr9 106194882 106195072 -36076372 - MIR SINE MIR -44 218 15 474 151 139 0 chr9 106195227 106195313 -36076131 - 5S rRNA rRNA -19 102 5 291 268 0 0 chr9 106195824 106195880 -36075564 - MER2 DNA MER2_type 0 345 290 27 49 0 0 chr9 106195919 106195960 -36075484 + AT_rich Low_complexity Low_complexity 1 41 0 2187 101 0 17 chr9 106195991 106196287 -36075157 + AluSp SINE Alu 6 296 -17 827 168 126 0 chr9 106196292 106196459 -36074985 - MER2 DNA MER2_type -152 193 6 318 253 11 11 chr9 106196461 106196552 -36074892 + (TA)n Simple_repeat Simple_repeat 2 92 0 41 36 0 0 chr9 106197307 106197362 -36074082 + AT_rich Low_complexity Low_complexity 1 55 0 544 218 135 24 chr9 106198023 106198193 -36073251 + MER5A DNA MER1_type 1 189 0 2318 105 0 6 chr9 106199242 106199557 -36071887 - AluSq SINE Alu 0 313 1 24 0 0 0 chr9 106201026 106201050 -36070394 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr9 106201664 106201698 -36069746 + (CA)n Simple_repeat Simple_repeat 2 35 0 2308 93 0 3 chr9 106201812 106202112 -36069332 - AluSc SINE Alu -10 299 1 2249 105 3 0 chr9 106202123 106202417 -36069027 - AluSp SINE Alu -18 295 1 609 191 15 15 chr9 106202461 106202597 -36068847 + L1ME3A LINE L1 6026 6161 -9 1832 192 74 20 chr9 106202799 106203189 -36068255 - MLT2D LTR ERVL -3 411 1 294 275 138 19 chr9 106205271 106205431 -36066013 + MIR SINE MIR 75 253 -9 193 171 73 0 chr9 106205401 106205442 -36066002 + L2 LINE L2 3270 3313 0 * 1185 307 78 12 chr9 106206294 106206780 -36064664 - LTR33 LTR ERVL 0 521 4 1786 176 46 3 chr9 106207109 106207455 -36063989 - MER46B DNA MER2_type 0 236 1 620 334 107 16 chr9 106207457 106207840 -36063604 - LTR33 LTR ERVL -64 457 40 24 32 0 0 chr9 106208182 106208213 -36063231 + AT_rich Low_complexity Low_complexity 1 31 0 560 151 11 0 chr9 106209215 106209308 -36062136 + AluJb SINE Alu 205 298 -14 4640 182 30 4 chr9 106209312 106210414 -36061030 + L1PA16 LINE L1 5024 6150 -16 2633 151 2 54 chr9 106210480 106210958 -36060486 - MER49 LTR ERV1 -464 459 7 1097 279 57 22 chr9 106211250 106211842 -36059602 + L1M4 LINE L1 4521 5133 -1013 242 203 85 0 chr9 106211850 106211909 -36059535 + L1M4 LINE L1 5195 5258 -888 335 143 286 57 chr9 106211916 106212021 -36059423 + MLT2C1 LTR ERVL 269 397 0 2221 203 110 73 chr9 106212023 106212643 -36058801 - MLT1E1 LTR MaLR -3 651 9 1204 249 36 122 chr9 106212675 106213391 -36058053 - MLT1E1-int LTR MaLR -25 1346 692 1183 254 52 10 chr9 106213592 106214063 -36057381 - MLT1E1-int LTR MaLR -760 611 2 1262 240 54 18 chr9 106214064 106214639 -36056805 - MLT1E1 LTR MaLR 0 654 1 1231 166 17 17 chr9 106214812 106215047 -36056397 + L1MA9 LINE L1 5914 6148 -164 3498 20 0 0 chr9 106215822 106216221 -36055223 - L1PA3 LINE L1 -209 5946 5548 1754 19 0 5 chr9 106216221 106216430 -36055014 + L1PA3 LINE L1 5947 6155 0 5212 185 19 8 chr9 106216444 106218461 -36052983 - L1PA16 LINE L1 -9 6157 4125 343 226 38 0 chr9 106218506 106218639 -36052805 + (TA)n Simple_repeat Simple_repeat 2 139 0 1462 299 87 24 chr9 106219375 106219926 -36051518 + MLT1E LTR MaLR 1 586 -7 2065 108 34 6 chr9 106219987 106220499 -36050945 + L1P4 LINE L1 5051 5576 -592 869 209 23 27 chr9 106220574 106220782 -36050662 + LTR41 LTR ERVL 1 234 -561 1782 147 20 7 chr9 106221254 106221602 -36049842 - MER4A LTR ERV1 0 664 254 324 138 46 15 chr9 106221596 106221661 -36049783 - MER4A LTR ERV1 -597 67 1 * 488 215 24 101 chr9 106221661 106221788 -36049656 + LTR41 LTR ERVL 591 718 -77 1652 99 0 5 chr9 106221788 106222009 -36049435 - AluSq SINE Alu -7 306 87 488 215 24 101 chr9 106222009 106222082 -36049362 + LTR41 LTR ERVL 718 795 0 288 0 0 0 chr9 106222089 106222121 -36049323 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 11149 28 1 0 chr9 106222124 106224211 -36047233 - L1PA3 LINE L1 -3 6152 4066 21 0 0 0 chr9 106224278 106224299 -36047145 + AT_rich Low_complexity Low_complexity 1 21 0 3415 120 26 75 chr9 106224336 106224961 -36046483 - LTR26 LTR ERV1 0 603 10 435 339 25 4 chr9 106225691 106225899 -36045545 - MIR SINE MIR -44 218 2 305 273 66 161 chr9 106225976 106226171 -36045273 - L3 LINE CR1 -45 1532 1371 279 0 0 0 chr9 106226171 106226202 -36045242 + (GA)n Simple_repeat Simple_repeat 2 32 0 305 273 66 161 chr9 106226202 106226292 -36045152 - L3 LINE CR1 -206 1371 1274 566 100 0 0 chr9 106226331 106226411 -36045033 - MADE1 DNA Mariner 0 80 1 1565 188 40 90 chr9 106226411 106226885 -36044559 - MER31B LTR ERV1 -16 450 1 4264 223 48 51 chr9 106226885 106228201 -36043243 - MER31B-int LTR ERV1 -20 4916 3605 1265 265 28 18 chr9 106228199 106228595 -36042849 - MER31B-int LTR ERV1 -1681 3255 2856 * 1485 231 70 73 chr9 106228861 106229248 -36042196 - MER31B-int LTR ERV1 -2464 2472 2085 2542 42 7 3 chr9 106229248 106229557 -36041887 - AluY SINE Alu 0 311 2 1485 231 70 73 chr9 106229557 106230014 -36041430 - MER31B-int LTR ERV1 -2851 2085 1631 4243 221 70 71 chr9 106230018 106231463 -36039981 - MER31B-int LTR ERV1 -3483 1453 10 1915 177 33 64 chr9 106231500 106231981 -36039463 - MER31B LTR ERV1 0 466 1 2678 94 6 0 chr9 106233458 106233818 -36037626 + THE1B LTR MaLR 1 362 -2 26 0 0 0 chr9 106233968 106233994 -36037450 + AT_rich Low_complexity Low_complexity 1 26 0 670 328 107 40 chr9 106234014 106234611 -36036833 + L2 LINE L2 2212 2848 -466 1030 213 119 105 chr9 106234613 106234966 -36036478 + MLT2B1 LTR ERVL 1 358 -56 396 359 68 28 chr9 106235367 106235618 -36035826 - MIR SINE MIR -1 261 1 269 341 58 17 chr9 106236557 106236730 -36034714 + L2 LINE L2 3129 3308 -5 255 387 54 40 chr9 106238796 106239018 -36032426 - L2 LINE L2 -182 3090 2866 191 317 32 65 chr9 106239432 106239555 -36031889 - MIR SINE MIR -44 218 100 440 309 60 39 chr9 106239623 106239663 -36031781 + L3 LINE CR1 631 669 -908 3026 182 46 21 chr9 106239663 106240289 -36031155 + MER73 LTR ERVL 3 644 0 440 309 60 39 chr9 106240289 106240481 -36030963 + L3 LINE CR1 669 868 -709 268 278 42 0 chr9 106240538 106240610 -36030834 + L2 LINE L2 3191 3265 -7 674 224 0 0 chr9 106242610 106242726 -36028718 - FLAM_A SINE Alu -16 117 2 1882 135 0 7 chr9 106242766 106243040 -36028404 + AluSx SINE Alu 41 312 0 206 53 79 0 chr9 106245123 106245161 -36026283 + T-rich Low_complexity Low_complexity 2 42 0 7230 6 0 0 chr9 106245201 106246011 -36025433 - L1HS LINE L1 0 6155 5346 2073 144 31 25 chr9 106246705 106247059 -36024385 - THE1B LTR MaLR 0 364 9 333 305 11 0 chr9 106247926 106248021 -36023423 + MIR SINE MIR 53 148 -114 205 293 95 9 chr9 106248835 106248951 -36022493 - MIR SINE MIR 0 262 137 2034 120 0 17 chr9 106249481 106249782 -36021662 + AluSx SINE Alu 1 296 -16 240 35 0 0 chr9 106250303 106250332 -36021112 + (A)n Simple_repeat Simple_repeat 1 29 0 1355 179 32 8 chr9 106250848 106251094 -36020350 + AluSx SINE Alu 37 288 -24 258 188 100 25 chr9 106251210 106251290 -36020154 - L1ME LINE L1 -654 5467 5382 23 0 0 0 chr9 106251393 106251416 -36020028 + AT_rich Low_complexity Low_complexity 1 23 0 384 298 44 0 chr9 106251677 106251791 -36019653 + MER94 DNA DNA 1 119 -15 501 286 16 0 chr9 106252531 106252657 -36018787 + MIR SINE MIR 33 160 -102 293 245 123 111 chr9 106252751 106253004 -36018440 - MLT1H LTR MaLR -199 350 95 204 385 173 36 chr9 106254985 106255263 -36016181 + L2 LINE L2 2957 3272 0 360 343 12 18 chr9 106255460 106255629 -36015815 + MIR SINE MIR 2 169 -93 14947 30 1 1 chr9 106256094 106258649 -36012795 - L1PA3 LINE L1 0 6155 3592 6677 29 1 0 chr9 106258649 106259474 -36011970 + L1PA3 LINE L1 2766 3591 -2555 263 295 0 0 chr9 106259720 106259781 -36011663 + polypyrimidine Low_complexity Low_complexity 2 62 0 2791 68 73 26 chr9 106259798 106260179 -36011265 + MLT2A1 LTR ERVL 1 405 -39 450 65 0 0 chr9 106260179 106260241 -36011203 + (TA)n Simple_repeat Simple_repeat 2 63 0 2791 68 73 26 chr9 106260241 106260283 -36011161 + MLT2A1 LTR ERVL 405 444 0 361 310 132 51 chr9 106260404 106260601 -36010843 + MIR SINE MIR 49 261 -1 295 216 68 14 chr9 106260637 106260711 -36010733 - MER63 DNA MER1_type -4 1058 981 308 242 88 0 chr9 106260713 106260804 -36010640 - MER63 DNA MER1_type -85 751 27 668 167 0 18 chr9 106261017 106261131 -36010313 + FLAM_C SINE Alu 14 125 -18 427 119 0 0 chr9 106262285 106262344 -36009100 - THE1A LTR MaLR 0 355 297 9215 105 5 10 chr9 106262347 106263633 -36007811 - THE1A-int LTR MaLR -301 1279 1 2137 122 11 20 chr9 106263637 106263991 -36007453 - THE1A LTR MaLR -4 351 1 328 239 60 67 chr9 106264617 106264751 -36006693 + L2 LINE L2 3163 3295 -18 612 311 36 52 chr9 106264870 106265118 -36006326 - MIR SINE MIR 0 262 19 232 344 59 22 chr9 106265891 106266214 -36005230 + HAL1b LINE L1 373 707 -641 331 332 57 33 chr9 106266495 106266862 -36004582 + L1M4 LINE L1 4711 5086 -1060 311 295 156 6 chr9 106266933 106267106 -36004338 + L1M4 LINE L1 5205 5403 -743 224 176 0 29 chr9 106267410 106267478 -36003966 + (TTAA)n Simple_repeat Simple_repeat 1 66 0 229 157 71 86 chr9 106267655 106267725 -36003719 - MER3 DNA MER1_type 0 209 141 1207 240 53 50 chr9 106267756 106268249 -36003195 + MER39 LTR ERV1 1 707 0 373 229 0 0 chr9 106268267 106268337 -36003107 - MER3 DNA MER1_type -139 70 1 280 366 98 8 chr9 106268439 106268562 -36002882 + L2 LINE L2 3123 3256 -16 1600 195 61 43 chr9 106268678 106268888 -36002556 + LTR2 LTR ERV1 1 206 -243 366 23 0 0 chr9 106268888 106268931 -36002513 + (TTCTG)n Simple_repeat Simple_repeat 1 43 0 1600 195 61 43 chr9 106268931 106269161 -36002283 + LTR2 LTR ERV1 206 449 0 35 54 0 0 chr9 106269228 106269284 -36002160 + AT_rich Low_complexity Low_complexity 1 56 0 5364 131 22 4 chr9 106270479 106271294 -36000150 - HSMAR2 DNA Mariner -5 1297 468 2848 147 19 6 chr9 106271923 106272407 -35999037 - HSMAR2 DNA Mariner -811 491 2 252 0 0 0 chr9 106272407 106272435 -35999009 + (TG)n Simple_repeat Simple_repeat 2 29 0 245 150 25 0 chr9 106272674 106272714 -35998730 + MIR SINE MIR 212 252 -10 927 219 30 43 chr9 106272815 106273168 -35998276 - MER31B LTR ERV1 0 466 1 1344 201 73 39 chr9 106273658 106274016 -35997428 + MLT1A2 LTR MaLR 5 374 0 549 194 0 0 chr9 106274788 106274886 -35996558 - AluJ/FLAM SINE Alu -214 98 1 244 257 150 14 chr9 106275354 106275494 -35995950 - MLT1H LTR MaLR -12 537 379 234 167 0 0 chr9 106275686 106275722 -35995722 + L1MC4 LINE L1 7431 7466 -576 717 236 7 0 chr9 106275735 106275883 -35995561 - FRAM SINE Alu -27 149 1 238 322 23 0 chr9 106275884 106275971 -35995473 - MLT1E LTR MaLR -467 126 38 21 36 0 0 chr9 106276827 106276855 -35994589 + AT_rich Low_complexity Low_complexity 1 28 0 12046 226 55 24 chr9 106277382 106277737 -35993707 - L1PB4 LINE L1 0 6858 6515 243 0 0 0 chr9 106277737 106277764 -35993680 + (TG)n Simple_repeat Simple_repeat 2 28 0 225 0 0 0 chr9 106277763 106277788 -35993656 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 12046 226 55 24 chr9 106277764 106281850 -35989594 - L1PB4 LINE L1 -343 6515 2557 2224 82 0 0 chr9 106281850 106282160 -35989284 - AluY SINE Alu 0 310 1 12046 226 55 24 chr9 106282160 106282369 -35989075 - L1PB4 LINE L1 -4301 2557 2356 324 0 0 0 chr9 106282369 106282405 -35989039 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1924 128 0 7 chr9 106282405 106282687 -35988757 - AluSx SINE Alu -32 280 1 12046 226 55 24 chr9 106282687 106282980 -35988464 - L1PB4 LINE L1 -4501 2357 1756 1473 227 90 13 chr9 106283121 106283508 -35987936 - MLT1C LTR MaLR 0 467 51 2494 169 12 0 chr9 106283508 106283921 -35987523 + MSTA LTR MaLR 1 418 -10 1979 191 29 2 chr9 106284102 106284520 -35986924 - L1MA6 LINE L1 -6 6294 5866 2948 130 42 46 chr9 106284521 106285206 -35986238 + L1MA6 LINE L1 5197 5882 -418 402 337 17 6 chr9 106285257 106285429 -35986015 + MLT1I LTR MaLR 220 393 -16 251 360 37 15 chr9 106285485 106285621 -35985823 + L2 LINE L2 3175 3313 0 286 320 33 16 chr9 106285769 106285891 -35985553 + MIR SINE MIR 15 138 -124 2157 99 0 0 chr9 106286087 106286360 -35985084 + AluSc SINE Alu 2 274 -35 225 0 0 0 chr9 106286363 106286388 -35985056 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 25 31 0 0 chr9 106286938 106286970 -35984474 + AT_rich Low_complexity Low_complexity 1 32 0 2539 246 14 19 chr9 106287274 106287896 -35983548 - MLT1E2 LTR MaLR -2 624 6 281 309 101 14 chr9 106288655 106288794 -35982650 - MIR SINE MIR -110 152 2 25 0 0 0 chr9 106288939 106288964 -35982480 + AT_rich Low_complexity Low_complexity 1 25 0 2140 111 0 0 chr9 106288970 106289258 -35982186 + AluSq SINE Alu 1 288 -25 186 71 0 0 chr9 106289258 106289286 -35982158 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1922 107 0 4 chr9 106289731 106290003 -35981441 - AluY SINE Alu -40 271 1 316 283 20 20 chr9 106290146 106290245 -35981199 + L1M4 LINE L1 4039 4137 -2009 266 228 21 88 chr9 106290396 106290555 -35980889 - HAL1 LINE L1 -1327 1180 1035 2080 135 38 24 chr9 106290555 106290925 -35980519 - THE1C LTR MaLR 0 375 1 266 228 21 88 chr9 106290925 106290958 -35980486 - HAL1 LINE L1 -1472 1035 1001 409 258 106 13 chr9 106291064 106291215 -35980229 + MIR SINE MIR 89 253 -9 745 206 7 0 chr9 106291426 106291562 -35979882 - FRAM SINE Alu -17 159 23 281 125 10 156 chr9 106291662 106291758 -35979686 - HAL1 LINE L1 -2319 188 107 369 0 0 0 chr9 106293020 106293061 -35978383 + (CA)n Simple_repeat Simple_repeat 2 42 0 5176 104 47 4 chr9 106293496 106294268 -35977176 + L1PA13 LINE L1 5351 6155 -8 349 289 151 39 chr9 106295042 106295217 -35976227 - L1MC5 LINE L1 -86 7875 7721 231 36 0 0 chr9 106295217 106295245 -35976199 + (TTG)n Simple_repeat Simple_repeat 2 29 0 349 289 151 39 chr9 106295245 106295353 -35976091 - L1MC5 LINE L1 -240 7721 7560 240 327 30 31 chr9 106295871 106295979 -35975465 + MIR SINE MIR 18 124 -84 263 254 16 87 chr9 106296041 106296167 -35975277 + MIR SINE MIR 146 262 0 1423 215 37 55 chr9 106296232 106296604 -35974840 + L1M4 LINE L1 3661 4025 -2121 3801 138 41 1 chr9 106296604 106297262 -35974182 - L1MA5 LINE L1 0 6300 5617 1423 215 37 55 chr9 106297262 106297345 -35974099 + L1M4 LINE L1 4025 4108 -2038 2012 204 40 0 chr9 106297356 106297782 -35973662 + L1M4 LINE L1 5319 5761 -423 260 363 29 0 chr9 106298313 106298415 -35973029 + MIR SINE MIR 158 262 0 2071 129 134 8 chr9 106298439 106298819 -35972625 + MSTA LTR MaLR 1 428 0 2119 141 115 18 chr9 106299463 106299853 -35971591 + MSTA LTR MaLR 1 428 0 300 297 61 32 chr9 106300075 106300321 -35971123 - L1MC4a LINE L1 -1907 5901 5649 263 319 204 9 chr9 106300371 106300597 -35970847 - L1MC4a LINE L1 -2152 5656 5387 1752 169 3 11 chr9 106300599 106300910 -35970534 - AluSx SINE Alu 0 309 1 23 92 0 0 chr9 106300916 106300981 -35970463 + AT_rich Low_complexity Low_complexity 1 65 0 29 28 0 0 chr9 106301241 106301277 -35970167 + AT_rich Low_complexity Low_complexity 1 36 0 254 184 33 145 chr9 106301321 106301473 -35969971 - HAL1 LINE L1 -1195 1312 1178 333 0 0 0 chr9 106302149 106302186 -35969258 + (CA)n Simple_repeat Simple_repeat 1 37 0 224 140 40 0 chr9 106302275 106302325 -35969119 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 188 184 20 0 chr9 106302549 106302598 -35968846 + CT-rich Low_complexity Low_complexity 3 52 0 26 0 0 0 chr9 106303142 106303168 -35968276 + AT_rich Low_complexity Low_complexity 1 26 0 319 362 55 9 chr9 106303518 106303736 -35967708 + L2 LINE L2 2533 2760 -554 186 410 60 8 chr9 106304020 106304154 -35967290 + L2 LINE L2 3115 3255 -17 242 323 0 0 chr9 106304424 106304489 -35966955 - L2 LINE L2 -22 3250 3186 409 323 67 34 chr9 106304547 106304816 -35966628 - L2 LINE L2 -777 2537 2260 1223 302 46 66 chr9 106304835 106305533 -35965911 + MER21B LTR ERV1 30 713 -150 222 314 31 114 chr9 106305557 106305847 -35965597 - L2 LINE L2 -1101 2213 1948 324 305 25 34 chr9 106305951 106306069 -35965375 - MIR SINE MIR -10 252 136 198 289 0 0 chr9 106306216 106306268 -35965176 - L2 LINE L2 -2417 897 846 24 0 0 0 chr9 106306290 106306314 -35965130 + AT_rich Low_complexity Low_complexity 1 24 0 188 374 60 12 chr9 106306825 106306908 -35964536 - MIR SINE MIR -65 143 57 24 32 0 0 chr9 106307618 106307649 -35963795 + AT_rich Low_complexity Low_complexity 1 31 0 2263 84 10 0 chr9 106309558 106309856 -35961588 + AluSp SINE Alu 9 309 -4 227 387 0 27 chr9 106311079 106311190 -35960254 - MER5A DNA MER1_type -27 162 55 * 248 386 8 16 chr9 106311106 106311233 -35960211 + MER5A DNA MER1_type 63 188 -1 2556 213 11 47 chr9 106311648 106312306 -35959138 - LTR27 LTR ERV1 -1 635 2 2077 112 0 10 chr9 106313926 106314220 -35957224 + AluSg SINE Alu 1 291 -19 816 258 13 23 chr9 106314398 106314736 -35956708 + AluSq SINE Alu 1 335 0 424 116 0 0 chr9 106315372 106315441 -35956003 + L1PA6 LINE L1 6085 6153 -1 2172 109 0 0 chr9 106315780 106316065 -35955379 + AluSg SINE Alu 22 306 -4 1770 196 31 3 chr9 106316097 106316485 -35954959 - L1MB4 LINE L1 0 6180 5782 304 280 21 0 chr9 106316512 106316605 -35954839 - L1P5 LINE L1 -356 5795 5701 334 390 35 0 chr9 106318024 106318165 -35953279 + MIR3 SINE MIR 56 201 -7 344 307 53 61 chr9 106318957 106319216 -35952228 + L2 LINE L2 2765 3021 -251 2036 132 28 0 chr9 106319366 106319684 -35951760 - MER41A LTR ERV1 0 554 228 552 320 132 12 chr9 106319727 106320046 -35951398 + LTR16A LTR ERVL 26 382 -68 276 233 0 0 chr9 106320053 106320113 -35951331 + MLT1G1 LTR MaLR 530 589 -6 1011 84 0 0 chr9 106322356 106322487 -35948957 - AluY SINE Alu -138 173 43 968 71 0 0 chr9 106322487 106322614 -35948830 + AluY SINE Alu 176 302 -9 304 350 31 49 chr9 106323517 106323680 -35947764 - MIR SINE MIR -71 191 32 224 288 59 71 chr9 106323650 106323820 -35947624 + MIR3 SINE MIR 30 197 -11 * 227 277 40 10 chr9 106324589 106324690 -35946754 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 550 216 86 22 chr9 106324842 106324981 -35946463 + MIR SINE MIR 105 252 -10 207 0 0 0 chr9 106324999 106325022 -35946422 + (CAT)n Simple_repeat Simple_repeat 2 24 0 613 98 0 71 chr9 106325922 106326034 -35945410 - MLT2C2 LTR ERVL -348 116 13 645 330 74 19 chr9 106326108 106326432 -35945012 - MLT1I LTR MaLR 0 409 68 21 0 0 0 chr9 106327184 106327205 -35944239 + AT_rich Low_complexity Low_complexity 1 21 0 316 40 40 0 chr9 106327624 106327674 -35943770 + (CA)n Simple_repeat Simple_repeat 1 52 0 1264 184 37 33 chr9 106329670 106329941 -35941503 + AluJb SINE Alu 3 274 -38 2086 199 29 5 chr9 106331043 106331464 -35939980 - MSTB1 LTR MaLR 0 432 2 22 0 0 0 chr9 106331608 106331630 -35939814 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr9 106332258 106332295 -35939149 + (CA)n Simple_repeat Simple_repeat 2 38 0 3205 108 51 8 chr9 106332295 106332785 -35938659 - MER9 LTR ERVK 0 511 1 228 240 0 0 chr9 106333300 106333350 -35938094 - Charlie8 DNA MER1_type 0 2417 2368 35 83 0 0 chr9 106334940 106335024 -35936420 + AT_rich Low_complexity Low_complexity 1 84 0 21 71 0 0 chr9 106335191 106335233 -35936211 + AT_rich Low_complexity Low_complexity 1 42 0 663 331 39 21 chr9 106335559 106335843 -35935601 - MLT1K LTR MaLR -292 296 8 1969 172 43 0 chr9 106335907 106336255 -35935189 + MLT1A1 LTR MaLR 3 365 0 656 232 53 132 chr9 106336384 106336587 -35934857 - MLT1D LTR MaLR -156 349 188 1793 160 3 22 chr9 106336587 106336900 -35934544 - AluJb SINE Alu -5 307 1 656 232 53 132 chr9 106336900 106337075 -35934369 - MLT1D LTR MaLR -317 188 1 258 330 68 27 chr9 106337419 106337640 -35933804 - HAL1b LINE L1 -791 557 328 1346 138 0 0 chr9 106338288 106338525 -35932919 - AluJb SINE Alu 0 322 86 5632 33 0 0 chr9 106340371 106341040 -35930404 - L1PA4 LINE L1 -147 6008 5340 1962 201 105 2 chr9 106341893 106342308 -35929136 - MER54A LTR ERVL 0 901 236 419 116 0 70 chr9 106342400 106342486 -35928958 + MADE1 DNA Mariner 1 80 0 1697 11 0 0 chr9 106342773 106342961 -35928483 - AluY SINE Alu 0 311 124 304 253 32 2 chr9 106344596 106344713 -35926731 + L1ME3A LINE L1 5831 5950 -212 579 315 12 90 chr9 106345870 106346090 -35925354 + L2 LINE L2 2917 3153 -160 264 91 0 0 chr9 106346090 106346134 -35925310 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 579 315 12 90 chr9 106346134 106346174 -35925270 + L2 LINE L2 3153 3195 -118 1123 190 106 36 chr9 106346174 106346448 -35924996 - AluJo SINE Alu -8 294 2 579 315 12 90 chr9 106346448 106346596 -35924848 + L2 LINE L2 3195 3294 -19 184 222 37 19 chr9 106350380 106350434 -35921010 + MIR SINE MIR 99 153 -109 904 225 53 21 chr9 106351163 106351448 -35919996 + L1MCc LINE L1 17 310 -6113 1241 246 61 63 chr9 106351464 106351740 -35919704 + L1MCc LINE L1 1052 1327 -5387 2485 75 3 0 chr9 106351740 106352047 -35919397 + AluSp SINE Alu 2 309 -4 1241 246 61 63 chr9 106352047 106352547 -35918897 + L1MCc LINE L1 1327 1824 -4890 1355 275 117 35 chr9 106352689 106354807 -35916637 + L1MCa LINE L1 905 3362 -3064 2179 97 0 13 chr9 106354886 106355186 -35916258 + AluSc SINE Alu 1 296 -13 329 301 129 61 chr9 106355541 106355920 -35915524 + L1MCc LINE L1 1939 2343 -4598 921 215 59 0 chr9 106356302 106356558 -35914886 + L1MB7 LINE L1 5133 5403 -743 716 175 48 0 chr9 106356577 106356703 -35914741 + MLT1E LTR MaLR 34 165 -428 1020 263 24 16 chr9 106356761 106357012 -35914432 + MLT1E LTR MaLR 334 586 -7 2559 248 43 18 chr9 106357018 106357781 -35913663 + L1MB7 LINE L1 5403 6184 0 257 180 12 0 chr9 106358315 106358376 -35913068 - L1MC2 LINE L1 -4 6329 6265 432 298 131 47 chr9 106358385 106358951 -35912493 + L1MCc LINE L1 3478 4103 -2838 1916 180 19 3 chr9 106358985 106359352 -35912092 - L1PB4 LINE L1 -1 6155 5783 233 224 0 0 chr9 106359368 106359417 -35912027 - L1MC4 LINE L1 -1337 6705 6657 23 54 0 0 chr9 106359791 106359828 -35911616 + AT_rich Low_complexity Low_complexity 1 37 0 356 264 0 11 chr9 106359986 106360077 -35911367 + L1MC4 LINE L1 6614 6703 -1339 339 241 46 11 chr9 106360081 106360144 -35911300 + L1MC4 LINE L1 6614 6682 -1360 1053 150 0 0 chr9 106360144 106360324 -35911120 + (TA)n Simple_repeat Simple_repeat 1 180 0 339 241 46 11 chr9 106360324 106360347 -35911097 + L1MC4 LINE L1 6682 6703 -1339 192 179 0 0 chr9 106360347 106360386 -35911058 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 590 280 95 29 chr9 106411069 106411415 -35860029 + L1ME3A LINE L1 5519 5887 -234 1281 135 31 0 chr9 106411563 106411785 -35859659 + L1MA5 LINE L1 6071 6299 -1 1763 193 38 33 chr9 106411882 106412276 -35859168 - L1MC1 LINE L1 0 6333 5938 227 81 0 0 chr9 106412399 106412436 -35859008 - L1M LINE L1 -1043 5290 5254 246 219 49 49 chr9 106413289 106413371 -35858073 - L2 LINE L2 -4 3268 3187 373 291 80 56 chr9 106413442 106413655 -35857789 + L1MEc LINE L1 1540 1757 -4639 363 224 129 54 chr9 106413662 106413809 -35857635 + L1MA9 LINE L1 6113 6270 -42 221 286 0 48 chr9 106413903 106413966 -35857478 - L2 LINE L2 -9 3263 3204 268 150 0 0 chr9 106414148 106414188 -35857256 + U2 snRNA snRNA 1 40 -148 1285 218 8 12 chr9 106414444 106414701 -35856743 + AluJo SINE Alu 41 296 -16 239 330 11 0 chr9 106414853 106414941 -35856503 + L1ME3A LINE L1 5994 6082 -88 1686 175 26 34 chr9 106415127 106415505 -35855939 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr9 106416627 106416656 -35854788 + AT_rich Low_complexity Low_complexity 1 29 0 313 358 41 27 chr9 106417433 106417654 -35853790 + L2 LINE L2 2587 2810 -504 6613 142 25 74 chr9 106417888 106420079 -35851365 + L1PA14 LINE L1 3872 5934 -227 287 331 13 60 chr9 106421388 106421539 -35849905 - MIR SINE MIR -114 148 5 286 333 20 10 chr9 106421965 106422067 -35849377 - L2 LINE L2 -2 3311 3209 350 304 143 6 chr9 106422164 106422332 -35849112 + MER69 DNA AcHobo 1 191 -2335 370 170 27 54 chr9 106422505 106422617 -35848827 + L1MC5 LINE L1 7802 7910 -51 23 0 0 0 chr9 106422775 106422798 -35848646 + AT_rich Low_complexity Low_complexity 1 23 0 296 236 28 14 chr9 106423398 106423470 -35847974 - L2 LINE L2 -9 3263 3191 2052 182 43 12 chr9 106424315 106424732 -35846712 + Tigger2a DNA MER2_type 5 434 0 1209 177 10 0 chr9 106424962 106425171 -35846273 - MER2 DNA MER2_type -134 211 1 325 313 117 18 chr9 106425747 106425910 -35845534 - MIR SINE MIR -47 215 37 454 306 86 20 chr9 106426650 106426895 -35844549 + MIR SINE MIR 1 261 -1 202 324 15 15 chr9 106428865 106428933 -35842511 - L2 LINE L2 -3 3310 3243 1706 171 26 19 chr9 106429746 106430056 -35841388 + AluJb SINE Alu 1 312 0 198 103 0 0 chr9 106430059 106430088 -35841356 + (A)n Simple_repeat Simple_repeat 1 29 0 1137 255 69 77 chr9 106430583 106431078 -35840366 + MLT2B1 LTR ERVL 1 376 -38 422 283 64 17 chr9 106433580 106433753 -35837691 - L1ME3A LINE L1 -1 6169 5989 222 323 67 49 chr9 106434138 106434302 -35837142 - MER5B DNA MER1_type 0 178 12 230 278 38 75 chr9 106434401 106434534 -35836910 - MER5A DNA MER1_type -1 188 61 660 181 11 17 chr9 106434542 106434719 -35836725 + CT-rich Low_complexity Low_complexity 3 178 0 185 401 15 0 chr9 106435181 106435313 -35836131 - L2 LINE L2 -781 2533 2400 326 327 48 30 chr9 106436376 106436541 -35834903 - L3 LINE CR1 -3 1574 1407 268 339 23 47 chr9 106436627 106436798 -35834646 + MER5A DNA MER1_type 21 187 -2 466 291 159 0 chr9 106436810 106436961 -35834483 - MER5A DNA MER1_type -6 183 9 457 346 138 44 chr9 106436973 106437522 -35833922 - L3 LINE CR1 -278 1299 699 6087 9 1 0 chr9 106437539 106438228 -35833216 - L1PA2 LINE L1 -4 6151 5462 296 323 195 18 chr9 106438418 106438489 -35832955 - MER20 DNA MER1_type -21 198 141 2135 171 39 10 chr9 106438489 106438903 -35832541 + MSTB LTR MaLR 1 426 0 296 323 195 18 chr9 106438903 106438995 -35832449 - MER20 DNA MER1_type -78 141 6 1005 293 42 3 chr9 106439309 106439616 -35831828 + MER110 LTR ERV1 166 484 -7 298 233 0 75 chr9 106439755 106439875 -35831569 + GA-rich Low_complexity Low_complexity 3 113 0 212 331 99 25 chr9 106441916 106442037 -35829407 - MIR SINE MIR -25 237 108 24 0 0 0 chr9 106442840 106442864 -35828580 + AT_rich Low_complexity Low_complexity 1 24 0 270 339 31 31 chr9 106443377 106443507 -35827937 + MIR SINE MIR 20 149 -59 180 257 0 0 chr9 106443737 106443772 -35827672 + MIR3 SINE MIR 150 184 -24 2105 132 15 24 chr9 106443962 106444302 -35827142 - MER1B DNA MER1_type 0 337 1 358 288 74 29 chr9 106444757 106445000 -35826444 - L1ME3A LINE L1 -112 6009 5756 486 271 14 43 chr9 106445048 106445188 -35826256 - MIR SINE MIR -31 231 96 680 263 91 9 chr9 106445668 106446063 -35825381 + LTR40b LTR ERVL 1 462 0 225 340 20 0 chr9 106446065 106446165 -35825279 - L1ME3A LINE L1 -540 5581 5480 330 331 7 27 chr9 106447460 106447608 -35823836 + MIR SINE MIR 118 262 0 25 31 0 0 chr9 106447614 106447646 -35823798 + AT_rich Low_complexity Low_complexity 1 32 0 250 268 72 0 chr9 106447862 106447959 -35823485 - MIR SINE MIR -38 224 121 637 304 100 30 chr9 106447984 106448576 -35822868 - L1ME3A LINE L1 -271 5899 5267 22 0 0 0 chr9 106448642 106448664 -35822780 + AT_rich Low_complexity Low_complexity 1 22 0 359 297 44 57 chr9 106448739 106448968 -35822476 - L1ME3A LINE L1 -913 5233 5008 328 310 82 18 chr9 106449100 106449271 -35822173 - L1ME3A LINE L1 -1323 4823 4642 380 224 63 30 chr9 106449287 106449440 -35822004 - L1 LINE L1 -1207 4939 4781 360 64 0 0 chr9 106449653 106449700 -35821744 + (TA)n Simple_repeat Simple_repeat 1 47 0 1712 163 88 19 chr9 106449720 106450082 -35821362 - L1PA16 LINE L1 0 6166 5780 776 127 8 0 chr9 106450078 106450196 -35821248 + L1PA16 LINE L1 5682 5800 -366 * 625 148 71 56 chr9 106450197 106450393 -35821051 + ORSL DNA AcHobo 77 275 0 1399 281 66 9 chr9 106450600 106451240 -35820204 - L1 LINE L1 -1456 4690 4015 240 259 65 0 chr9 106451390 106451498 -35819946 - L1 LINE L1 -2374 3772 3658 330 291 40 7 chr9 106451529 106451677 -35819767 - L1 LINE L1 -2661 3485 3333 932 254 127 43 chr9 106451727 106452500 -35818944 - L1 LINE L1 -2907 3239 2402 509 199 27 0 chr9 106453831 106454020 -35817424 + CT-rich Low_complexity Low_complexity 1 194 0 243 0 0 0 chr9 106454020 106454047 -35817397 + (CA)n Simple_repeat Simple_repeat 1 27 0 219 214 0 36 chr9 106454429 106454513 -35816931 + CT-rich Low_complexity Low_complexity 2 82 0 212 339 101 9 chr9 106454536 106454645 -35816799 + MIR SINE MIR 25 143 -119 300 321 75 8 chr9 106454659 106454793 -35816651 + MER117 DNA MER1_type 2 144 -53 33 25 0 0 chr9 106455210 106455250 -35816194 + AT_rich Low_complexity Low_complexity 1 40 0 284 316 38 44 chr9 106455385 106455543 -35815901 - MER5B DNA MER1_type 0 178 22 255 298 92 23 chr9 106455519 106455650 -35815794 - MIR3 SINE MIR -31 177 38 * 219 167 0 0 chr9 106455853 106455895 -35815549 + (TA)n Simple_repeat Simple_repeat 1 42 0 1040 258 161 33 chr9 106455951 106457107 -35814337 + L1M4 LINE L1 1216 2689 -3995 23 68 0 0 chr9 106457127 106457171 -35814273 + AT_rich Low_complexity Low_complexity 1 44 0 236 161 16 0 chr9 106457235 106457297 -35814147 + T-rich Low_complexity Low_complexity 3 65 0 5691 160 9 12 chr9 106457297 106458913 -35812531 - L1PB1 LINE L1 -38 6170 4556 2300 197 31 24 chr9 106458928 106459482 -35811962 - L1PB1 LINE L1 -2154 4049 3492 3556 291 23 11 chr9 106459488 106460237 -35811207 - L1PB1 LINE L1 -5439 765 8 * 7640 241 24 11 chr9 106460204 106461821 -35809623 - L1PBa LINE L1 -5219 1644 8 313 196 174 0 chr9 106461900 106461992 -35809452 + MER58 DNA MER1_type 2313 2420 0 827 300 92 2 chr9 106461992 106462405 -35809039 + L1M4 LINE L1 3554 4013 -2631 198 71 0 0 chr9 106462405 106462433 -35809011 + (CA)n Simple_repeat Simple_repeat 1 28 0 827 300 92 2 chr9 106462433 106462473 -35808971 + L1M4 LINE L1 4013 4048 -2596 1801 236 68 19 chr9 106463159 106463675 -35807769 + L1M3e LINE L1 1 541 -6489 * 5266 169 39 8 chr9 106463671 106465126 -35806318 + L1MA9 LINE L1 4809 6306 -6 28 61 0 0 chr9 106466265 106466314 -35805130 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr9 106467167 106467190 -35804254 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 28 0 0 0 chr9 106467403 106467431 -35804013 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 106469781 106469802 -35801642 + AT_rich Low_complexity Low_complexity 1 21 0 609 321 132 27 chr9 106470354 106470914 -35800530 + L1ME4a LINE L1 5316 5934 -187 1906 260 128 79 chr9 106471910 106473065 -35798379 - MER69B DNA AcHobo -5 1221 10 236 288 50 25 chr9 106473964 106474044 -35797400 + L2 LINE L2 3190 3271 -1 180 0 0 0 chr9 106476143 106476163 -35795281 + (TAA)n Simple_repeat Simple_repeat 2 21 0 555 156 16 16 chr9 106476295 106476423 -35795021 + CT-rich Low_complexity Low_complexity 4 131 0 2388 151 43 7 chr9 106476437 106476854 -35794590 - MSTB1 LTR MaLR 0 432 1 386 345 82 52 chr9 106480903 106481233 -35790211 - L2 LINE L2 -1 3271 2932 1491 237 13 18 chr9 106481513 106481901 -35789543 + L1ME1 LINE L1 5775 6160 -6 889 271 36 4 chr9 106482168 106482393 -35789051 - MIR SINE MIR -17 245 14 216 67 0 0 chr9 106483211 106483241 -35788203 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 445 273 112 14 chr9 106483662 106483805 -35787639 - MER90 LTR ERV1 -16 598 442 660 207 30 47 chr9 106483944 106484113 -35787331 - MER90 LTR ERV1 -406 169 4 1572 217 58 12 chr9 106485434 106485844 -35785600 - L1MD3 LINE L1 -165 7830 7402 260 226 11 86 chr9 106485847 106485940 -35785504 - MLT1F1 LTR MaLR -447 120 35 604 182 42 0 chr9 106485940 106486083 -35785361 - L1MD3 LINE L1 -879 7116 6968 5302 178 37 15 chr9 106486086 106487413 -35784031 - L1MA4 LINE L1 -1 6299 4955 2195 95 0 0 chr9 106487413 106487727 -35783717 - AluSx SINE Alu 0 314 1 1562 181 25 47 chr9 106487736 106488100 -35783344 - L1MB8 LINE L1 0 6178 5823 5720 111 34 6 chr9 106488100 106489348 -35782096 - L1PA14 LINE L1 -2 6159 4885 1484 203 14 39 chr9 106489489 106489703 -35781741 + L1MB7 LINE L1 5254 5457 -727 1547 129 141 11 chr9 106489703 106489966 -35781478 - AluSg1 SINE Alu -12 297 1 1484 203 14 39 chr9 106489966 106490111 -35781333 + L1MB7 LINE L1 5457 5604 -580 1872 173 7 64 chr9 106490119 106490571 -35780873 - L1MA4 LINE L1 -2408 3738 3313 * 5551 169 20 32 chr9 106490564 106491950 -35779494 + L1MA4 LINE L1 4931 6289 -11 830 194 40 20 chr9 106491952 106492244 -35779200 + L1MB7 LINE L1 5584 6053 -131 239 224 17 0 chr9 106492232 106492290 -35779154 - L1M4 LINE L1 -1075 5071 5013 * 24 0 0 0 chr9 106492435 106492459 -35778985 + AT_rich Low_complexity Low_complexity 1 24 0 212 232 24 12 chr9 106492491 106492573 -35778871 + (TA)n Simple_repeat Simple_repeat 1 83 0 22 35 0 0 chr9 106492577 106492606 -35778838 + AT_rich Low_complexity Low_complexity 1 29 0 1217 209 39 94 chr9 106492922 106493358 -35778086 + MLT2D LTR ERVL 1 412 -2 2261 201 21 68 chr9 106493797 106494370 -35777074 + MLT2B3 LTR ERVL 1 546 -8 2741 187 37 20 chr9 106495061 106495606 -35775838 - MLT2B3 LTR ERVL 0 554 1 1635 155 0 85 chr9 106496067 106496383 -35775061 - AluSx SINE Alu -23 289 1 1618 251 38 18 chr9 106497379 106497874 -35773570 - L1ME2 LINE L1 -8 6156 5652 1725 191 67 20 chr9 106497876 106498404 -35773040 + L1MDa LINE L1 1019 1611 -4929 1504 242 42 56 chr9 106498406 106498910 -35772534 + MLT1D LTR MaLR 3 499 -6 2059 258 57 29 chr9 106498916 106499652 -35771792 + L1MDa LINE L1 1606 2362 -4178 253 283 11 11 chr9 106499797 106499889 -35771555 + A-rich Low_complexity Low_complexity 3 94 0 321 265 124 29 chr9 106500518 106500673 -35770771 + MIR3 SINE MIR 2 171 -37 381 238 56 103 chr9 106501071 106501197 -35770247 - L2 LINE L2 -16 3256 3137 337 252 68 88 chr9 106501248 106501395 -35770049 - MIR SINE MIR -19 243 100 2212 85 7 0 chr9 106501405 106501698 -35769746 + AluSc SINE Alu 1 295 -14 2649 33 3 0 chr9 106501934 106502239 -35769205 + AluY SINE Alu 1 306 -5 1428 209 71 25 chr9 106502239 106502565 -35768879 + MLT1A2 LTR MaLR 34 374 0 442 267 40 84 chr9 106503139 106503364 -35768080 - MER102a DNA MER1_type -10 320 106 388 271 19 84 chr9 106503761 106503916 -35767528 + L1MDa LINE L1 1799 1943 -4597 255 244 232 0 chr9 106504829 106504911 -35766533 - L1ME LINE L1 -386 5784 5684 6476 72 25 1 chr9 106505050 106506396 -35765048 - L1PA8A LINE L1 -27 6104 4732 406 265 74 31 chr9 106506407 106506569 -35764875 - L1ME LINE L1 -2461 5581 5413 1516 241 58 9 chr9 106507492 106507840 -35763604 + MLT1F LTR MaLR 173 537 -5 23 0 0 0 chr9 106507887 106507910 -35763534 + AT_rich Low_complexity Low_complexity 1 23 0 251 340 80 0 chr9 106507965 106508065 -35763379 - MIR SINE MIR -94 168 61 316 332 106 49 chr9 106508998 106509555 -35761889 + L2 LINE L2 2598 3174 -98 283 358 60 22 chr9 106510184 106510383 -35761061 - MIR3 SINE MIR -54 208 4 1419 78 0 5 chr9 106511179 106511370 -35760074 + L1PA6 LINE L1 5952 6141 -13 189 0 0 0 chr9 106511813 106511834 -35759610 + (A)n Simple_repeat Simple_repeat 1 21 0 21 71 0 0 chr9 106512307 106512349 -35759095 + AT_rich Low_complexity Low_complexity 1 42 0 1081 266 60 37 chr9 106512510 106512859 -35758585 + Charlie6 DNA MER1_type 1 357 -3143 695 346 38 24 chr9 106512866 106513239 -35758205 - LTR16B LTR ERVL 0 464 87 713 332 52 0 chr9 106513688 106513998 -35757446 - HERV16 LTR ERVL -1765 3999 3674 3271 331 52 32 chr9 106514007 106514551 -35756893 - HERV16 LTR ERVL -1900 3096 2565 1706 204 16 11 chr9 106514551 106514914 -35756530 + MLT1A1 LTR MaLR 1 365 0 3271 331 52 32 chr9 106514914 106515587 -35755857 - HERV16 LTR ERVL -2431 2565 2292 3047 96 29 22 chr9 106515587 106516037 -35755407 + MLT2A2 LTR ERVL 1 453 0 3271 331 52 32 chr9 106516037 106516784 -35754660 - HERV16 LTR ERVL -2704 2292 1562 5058 239 39 42 chr9 106517067 106518549 -35752895 + Charlie6 DNA MER1_type 332 1807 -1693 8325 176 47 26 chr9 106518624 106519705 -35751739 + L1PB3 LINE L1 3344 4401 -1753 2072 173 64 7 chr9 106519705 106520110 -35751334 - MSTA LTR MaLR 0 428 1 8325 176 47 26 chr9 106520110 106521789 -35749655 + L1PB3 LINE L1 4401 6154 0 542 166 266 18 chr9 106521828 106521997 -35749447 + Charlie6 DNA MER1_type 1822 2032 -1468 344 313 62 78 chr9 106522770 106522949 -35748495 - MIR3 SINE MIR -6 202 27 265 321 12 36 chr9 106522969 106523053 -35748391 - MIR SINE MIR -85 123 42 541 295 22 54 chr9 106523145 106523395 -35748049 + MIR SINE MIR 15 256 -6 300 224 52 52 chr9 106524010 106524126 -35747318 - MIR SINE MIR -90 172 57 186 265 61 0 chr9 106524396 106524445 -35746999 + L2 LINE L2 2929 2980 -292 2249 183 67 16 chr9 106524573 106525020 -35746424 - MLT1D LTR MaLR -31 474 5 586 284 60 65 chr9 106525344 106525728 -35745716 - MER93a LTR ERV1 0 402 21 211 317 49 12 chr9 106526235 106526317 -35745127 + L2 LINE L2 3208 3292 -21 21 36 0 0 chr9 106526394 106526422 -35745022 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr9 106526464 106526491 -35744953 + (T)n Simple_repeat Simple_repeat 1 27 0 214 184 0 20 chr9 106527112 106527161 -35744283 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1101 167 72 32 chr9 106527370 106527618 -35743826 + MER44D DNA MER2_type 1 528 -81 13525 124 46 61 chr9 106527618 106527820 -35743624 - Tigger1 DNA MER2_type 0 2418 2214 5123 87 20 10 chr9 106527820 106528552 -35742892 + L1PB1 LINE L1 5410 6149 -2 13525 124 46 61 chr9 106528552 106528812 -35742632 - Tigger1 DNA MER2_type -204 2214 1951 180 0 0 0 chr9 106528812 106528832 -35742612 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 13525 124 46 61 chr9 106528832 106530823 -35740621 - Tigger1 DNA MER2_type -467 1951 2 472 191 12 0 chr9 106530823 106530906 -35740538 + MER44D DNA MER2_type 522 605 0 245 256 163 12 chr9 106532106 106532192 -35739252 - MIR SINE MIR -59 203 105 262 414 59 46 chr9 106532203 106532592 -35738852 - L2 LINE L2 -21 3251 2858 265 322 78 11 chr9 106532632 106532722 -35738722 - MIR3 SINE MIR -105 103 8 13772 176 63 53 chr9 106532918 106537456 -35733988 - MER109 Unknown Unknown -23 2409 1 22 56 0 0 chr9 106537961 106537997 -35733447 + AT_rich Low_complexity Low_complexity 1 36 0 354 305 118 41 chr9 106538010 106538241 -35733203 - MIR SINE MIR -15 247 3 442 293 15 15 chr9 106538870 106539003 -35732441 + L2 LINE L2 3181 3313 0 2215 86 0 28 chr9 106539784 106540104 -35731340 - AluY SINE Alu 0 312 1 1119 216 133 55 chr9 106540169 106540590 -35730854 + MLT1C LTR MaLR 6 459 -8 24 32 0 0 chr9 106541109 106541140 -35730304 + AT_rich Low_complexity Low_complexity 1 31 0 28 71 0 0 chr9 106541157 106541213 -35730231 + AT_rich Low_complexity Low_complexity 1 56 0 236 204 37 0 chr9 106541738 106541792 -35729652 + GA-rich Low_complexity Low_complexity 4 59 0 257 259 0 0 chr9 106542305 106542363 -35729081 - L1MDb LINE L1 -5430 979 922 494 274 116 6 chr9 106542982 106543146 -35728298 + MIR SINE MIR 81 262 0 2235 101 3 0 chr9 106543652 106543949 -35727495 - AluSp SINE Alu -15 298 1 408 321 66 28 chr9 106544185 106544397 -35727047 + L1ME4a LINE L1 5685 5904 -217 1327 96 0 0 chr9 106544741 106544908 -35726536 - AluSg SINE Alu -18 294 128 7657 20 2 0 chr9 106544910 106546201 -35725243 - L1PA2 LINE L1 -6 6149 4862 5178 26 2 0 chr9 106546201 106546822 -35724622 + L1PA2 LINE L1 4224 4845 -1301 1012 97 0 8 chr9 106546822 106546956 -35724488 - AluSg SINE Alu -177 133 1 273 328 172 8 chr9 106547617 106547751 -35723693 - L2 LINE L2 -6 3266 3111 189 74 0 0 chr9 106548005 106548032 -35723412 + (CA)n Simple_repeat Simple_repeat 2 28 0 336 308 51 13 chr9 106548127 106548283 -35723161 - L1MEc LINE L1 -4616 1780 1619 515 292 44 56 chr9 106548368 106548742 -35722702 + MLT1I LTR MaLR 47 384 -25 1810 134 8 0 chr9 106548809 106549070 -35722374 - AluSc SINE Alu -8 301 39 807 86 0 0 chr9 106549207 106549324 -35722120 + (TTC)n Simple_repeat Simple_repeat 2 118 0 7116 50 5 3 chr9 106549324 106550713 -35720731 - L1PA7 LINE L1 -11 6143 4762 900 233 21 11 chr9 106551005 106551284 -35720160 - L1M4 LINE L1 -1251 4895 4614 15345 88 8 2 chr9 106551283 106554221 -35717223 - L1PA7 LINE L1 -16 6138 3189 4721 93 10 10 chr9 106554223 106554933 -35716511 + L1P LINE L1 1811 2520 -3626 1848 249 39 63 chr9 106554967 106555734 -35715710 - L1M4 LINE L1 -1537 4609 3861 260 83 21 0 chr9 106555802 106555850 -35715594 + (TA)n Simple_repeat Simple_repeat 1 49 0 506 213 37 0 chr9 106555984 106556120 -35715324 - L1M4 LINE L1 -2392 3754 3614 357 309 26 20 chr9 106556184 106556336 -35715108 - L1MEc LINE L1 -5406 799 647 3647 20 0 0 chr9 106556351 106556934 -35714510 - L1PA3 LINE L1 -474 5681 5099 3733 45 2 11 chr9 106556934 106557400 -35714044 + L1PA3 LINE L1 5692 6153 -2 222 383 33 8 chr9 106557860 106557980 -35713464 - MIR SINE MIR -120 142 20 231 61 0 0 chr9 106559617 106559650 -35711794 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 129 0 0 chr9 106559847 106559878 -35711566 + (TC)n Simple_repeat Simple_repeat 2 32 0 301 324 83 39 chr9 106560303 106560507 -35710937 - L2 LINE L2 -702 2612 2400 319 305 95 33 chr9 106560757 106560967 -35710477 + L2 LINE L2 2278 2500 -814 8843 167 29 23 chr9 106561036 106562808 -35708636 - L1MA5 LINE L1 0 6300 4539 2091 119 7 0 chr9 106562808 106563102 -35708342 + AluY SINE Alu 1 296 -15 8843 167 29 23 chr9 106563102 106563389 -35708055 - L1MA5 LINE L1 -1761 4539 4255 342 0 0 0 chr9 106563389 106563427 -35708017 + (TA)n Simple_repeat Simple_repeat 1 38 0 8843 167 29 23 chr9 106563427 106564208 -35707236 - L1MA5 LINE L1 -2045 4255 3436 2028 184 63 50 chr9 106564505 106565000 -35706444 - MLT1D LTR MaLR -4 501 1 266 304 62 82 chr9 106565327 106565570 -35705874 + HAL1 LINE L1 252 489 -2018 2120 49 0 0 chr9 106566440 106566703 -35704741 - L1PA4 LINE L1 -3 6152 5890 1920 163 53 75 chr9 106566703 106567212 -35704232 + L1PA13 LINE L1 5660 6157 -6 24 0 0 0 chr9 106567747 106567771 -35703673 + AT_rich Low_complexity Low_complexity 1 24 0 6456 26 3 0 chr9 106567771 106568526 -35702918 - L1PA3 LINE L1 -3 6152 5396 615 213 26 171 chr9 106569125 106569367 -35702077 - L2 LINE L2 -5 3308 3116 2051 131 0 0 chr9 106569367 106569686 -35701758 + AluSx SINE Alu 1 319 0 615 213 26 171 chr9 106569686 106569750 -35701694 - L2 LINE L2 -197 3116 3044 792 332 53 18 chr9 106570019 106570359 -35701085 + LTR16C LTR ERVL 98 449 -42 624 275 85 11 chr9 106570587 106570776 -35700668 + MIR SINE MIR 49 251 -11 192 125 0 0 chr9 106571739 106571771 -35699673 + (GA)n Simple_repeat Simple_repeat 2 33 0 670 269 32 55 chr9 106571790 106572099 -35699345 - MLT1L LTR MaLR 0 615 314 351 0 0 0 chr9 106572324 106572363 -35699081 + (TG)n Simple_repeat Simple_repeat 2 40 0 528 273 16 0 chr9 106572420 106572548 -35698896 - MER94 DNA DNA 0 134 5 241 348 95 49 chr9 106572643 106572991 -35698453 - L2 LINE L2 -659 2655 2292 923 304 141 22 chr9 106573097 106573782 -35697662 - L2 LINE L2 -4 3309 2525 816 309 126 44 chr9 106573789 106574460 -35696984 - L2 LINE L2 -1258 2056 1305 1970 63 0 48 chr9 106574460 106574729 -35696715 + AluY SINE Alu 39 294 -17 816 309 126 44 chr9 106574729 106574875 -35696569 - L2 LINE L2 -2009 1305 1172 289 143 0 0 chr9 106574991 106575033 -35696411 - L2 LINE L2 -9 3263 3222 334 339 62 31 chr9 106575467 106575662 -35695782 - MIR SINE MIR -44 218 18 239 322 99 8 chr9 106576413 106576534 -35694910 + MIR3 SINE MIR 1 132 -76 326 122 95 40 chr9 106578289 106578363 -35693081 - MIR SINE MIR -2 260 183 2166 100 3 27 chr9 106578444 106578743 -35692701 + AluSx SINE Alu 1 292 -20 36 0 0 0 chr9 106578743 106578779 -35692665 + AT_rich Low_complexity Low_complexity 1 36 0 694 261 42 149 chr9 106579208 106579924 -35691520 - L2 LINE L2 -1910 1404 766 2120 147 94 8 chr9 106580009 106580403 -35691041 + MSTA LTR MaLR 1 428 0 607 341 52 75 chr9 106581231 106582207 -35689237 + L2 LINE L2 1629 2582 -732 272 311 117 31 chr9 106583139 106583361 -35688083 - L2 LINE L2 -61 3252 3012 1829 189 42 0 chr9 106583460 106583794 -35687650 + MER7A DNA MER2_type 1 346 0 747 144 0 72 chr9 106583943 106584096 -35687348 - FLAM_C SINE Alu -1 142 1 396 168 110 104 chr9 106584429 106584575 -35686869 - MLT1L LTR MaLR -331 259 106 736 284 77 24 chr9 106585196 106585623 -35685821 + MLT1J LTR MaLR 28 509 -2 2087 105 3 24 chr9 106585636 106585930 -35685514 - AluSg SINE Alu -22 288 1 21 36 0 0 chr9 106586179 106586207 -35685237 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr9 106587064 106587097 -35684347 + AT_rich Low_complexity Low_complexity 1 33 0 264 157 119 50 chr9 106587210 106587369 -35684075 + (CAGTA)n Simple_repeat Simple_repeat 4 173 0 276 164 28 73 chr9 106587407 106587584 -35683860 + (CACTA)n Simple_repeat Simple_repeat 4 172 0 277 160 21 80 chr9 106587624 106587811 -35683633 + (CACTA)n Simple_repeat Simple_repeat 4 179 0 292 174 29 70 chr9 106587972 106588207 -35683237 + (CACTA)n Simple_repeat Simple_repeat 1 225 0 362 160 28 72 chr9 106588317 106588498 -35682946 + (CACTA)n Simple_repeat Simple_repeat 5 177 0 370 173 35 58 chr9 106588593 106588804 -35682640 + (CACTA)n Simple_repeat Simple_repeat 1 206 0 808 310 87 40 chr9 106589382 106589911 -35681533 + L2 LINE L2 2196 2749 -565 250 404 45 25 chr9 106589944 106590142 -35681302 + L2 LINE L2 2858 3059 -213 28 29 0 0 chr9 106590681 106590716 -35680728 + AT_rich Low_complexity Low_complexity 1 35 0 220 237 26 13 chr9 106590919 106590995 -35680449 + (CAA)n Simple_repeat Simple_repeat 2 78 0 280 357 54 39 chr9 106591702 106591831 -35679613 + MIR3 SINE MIR 30 160 -48 270 246 16 0 chr9 106591831 106591892 -35679552 - MER20B DNA MER1_type 0 783 722 232 224 61 41 chr9 106591892 106591990 -35679454 - MER20B DNA MER1_type -168 615 516 5534 39 28 1 chr9 106592617 106593305 -35678139 - L1PA4 LINE L1 -2 6153 5448 5219 44 6 0 chr9 106593305 106593960 -35677484 + L1P LINE L1 3267 3925 -2221 300 232 37 12 chr9 106593961 106594043 -35677401 - MER20B DNA MER1_type -491 292 209 925 199 22 6 chr9 106594057 106594238 -35677206 + MER5A DNA MER1_type 6 189 0 308 312 71 53 chr9 106594281 106594451 -35676993 - MER20B DNA MER1_type -46 173 1 204 330 10 41 chr9 106595646 106595743 -35675701 - L2 LINE L2 -1 3271 3178 3273 13 2 0 chr9 106595889 106596286 -35675158 - L1PA3 LINE L1 -762 5384 4987 6828 24 1 2 chr9 106596287 106597089 -35674355 + L1PA3 LINE L1 5355 6155 0 1212 75 6 0 chr9 106597243 106597404 -35674040 - L1PA10 LINE L1 -2 6166 6005 333 274 0 38 chr9 106597840 106597969 -35673475 - AluJb SINE Alu 0 305 181 1682 173 70 28 chr9 106598762 106599121 -35672323 - THE1C LTR MaLR -1 374 1 1547 252 38 43 chr9 106599417 106600290 -35671154 + L1MDb LINE L1 41 979 -5430 1479 208 17 14 chr9 106600700 106600989 -35670455 - AluJb SINE Alu -22 290 1 2334 112 0 0 chr9 106602057 106602369 -35669075 - AluSx SINE Alu 0 312 1 390 121 12 0 chr9 106602805 106602888 -35668556 + LTR1 LTR ERV1 12 95 -690 1064 122 0 6 chr9 106602901 106603057 -35668387 + LTR1 LTR ERV1 631 785 0 285 269 0 39 chr9 106603550 106603628 -35667816 - MLT1K LTR MaLR -329 259 185 719 294 51 33 chr9 106603760 106604035 -35667409 + MLT1H1 LTR MaLR 1 280 -275 518 311 67 5 chr9 106604052 106604245 -35667199 + MLT1H1 LTR MaLR 390 594 -1 22 35 0 0 chr9 106604835 106604864 -35666580 + AT_rich Low_complexity Low_complexity 1 29 0 5566 29 0 6 chr9 106606010 106606674 -35664770 + L1PA4 LINE L1 5496 6155 0 434 277 41 29 chr9 106607451 106607897 -35663547 - L1MC/D LINE L1 -743 5472 5082 1573 285 123 30 chr9 106607902 106609602 -35661842 - L1MC/D LINE L1 -1425 4790 2932 303 313 116 21 chr9 106609672 106610148 -35661296 - L1MC/D LINE L1 -4330 2066 1546 1231 261 76 54 chr9 106610759 106611367 -35660077 - L1ME3 LINE L1 -71 6091 5470 * 29968 38 4 4 chr9 106611354 106615847 -35655597 - L1PA4 LINE L1 -2 6153 1666 1776 68 0 4 chr9 106615840 106616074 -35655370 + L1PA4 LINE L1 1430 1662 -4484 * 22 35 0 0 chr9 106616582 106616611 -35654833 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr9 106617808 106617847 -35653597 + AT_rich Low_complexity Low_complexity 1 39 0 343 237 24 59 chr9 106618130 106618276 -35653168 - L1MC/D LINE L1 -1304 1272 1094 1341 237 11 72 chr9 106618310 106618782 -35652662 - L1MC4 LINE L1 -138 7904 7462 2367 119 19 11 chr9 106620092 106620452 -35650992 - THE1B LTR MaLR -1 363 1 200 323 97 40 chr9 106621435 106621559 -35649885 - MIR SINE MIR -62 146 16 335 289 10 30 chr9 106621771 106621907 -35649537 - MIR SINE MIR -15 193 63 275 158 24 49 chr9 106621937 106622019 -35649425 - L1ME4a LINE L1 -69 6052 5973 347 261 142 0 chr9 106622099 106622233 -35649211 + MIR SINE MIR 50 202 -60 260 305 12 0 chr9 106623389 106623471 -35647973 + GA-rich Low_complexity Low_complexity 2 84 0 338 307 63 0 chr9 106623721 106623848 -35647596 - MIR SINE MIR -56 206 72 800 314 62 20 chr9 106623848 106624202 -35647242 - MLT1I LTR MaLR -16 393 25 25 31 0 0 chr9 106624317 106624349 -35647095 + AT_rich Low_complexity Low_complexity 1 32 0 298 326 41 58 chr9 106625088 106625260 -35646184 - L2 LINE L2 -4 3309 3141 386 254 150 31 chr9 106625271 106625464 -35645980 - L2 LINE L2 -825 2489 2274 1189 281 64 27 chr9 106625791 106626197 -35645247 + LTR16A LTR ERVL 30 450 0 715 301 94 71 chr9 106626259 106626781 -35644663 + MLT1H1 LTR MaLR 22 555 0 22 0 0 0 chr9 106626781 106626803 -35644641 + AT_rich Low_complexity Low_complexity 1 22 0 444 296 102 57 chr9 106627676 106627990 -35643454 + MLT1I LTR MaLR 33 360 -49 776 327 95 10 chr9 106628346 106628737 -35642707 - LTR16A LTR ERVL 0 450 27 185 313 26 87 chr9 106628851 106628966 -35642478 + L2 LINE L2 2946 3053 -219 4029 128 14 2 chr9 106629456 106630083 -35641361 - MER41B LTR ERV1 0 635 1 11507 107 32 13 chr9 106630083 106631294 -35640150 - MER41B-int LTR ERV1 0 5946 4689 2629 87 14 19 chr9 106631294 106631660 -35639784 - THE1B LTR MaLR 0 364 1 11507 107 32 13 chr9 106631660 106632185 -35639259 - MER41B-int LTR ERV1 -1257 4689 4176 11273 104 26 16 chr9 106632186 106633512 -35637932 - MER41B-int LTR ERV1 -2046 3900 2552 2414 78 57 0 chr9 106633512 106633843 -35637601 + L1PA10 LINE L1 5818 6167 -1 11273 104 26 16 chr9 106633843 106634233 -35637211 - MER41B-int LTR ERV1 -3394 2552 2167 906 85 50 20 chr9 106634229 106634418 -35637026 - MER41B-int LTR ERV1 -3929 2017 1719 * 2092 117 44 0 chr9 106634396 106634641 -35636803 - MER41B-int LTR ERV1 -3089 1791 1558 221 0 0 33 chr9 106634641 106634671 -35636773 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2092 117 44 0 chr9 106634671 106634739 -35636705 - MER41B-int LTR ERV1 -3322 1558 1285 2097 175 33 28 chr9 106634739 106635285 -35636159 - MLT2A2 LTR ERVL 0 554 3 7895 138 33 17 chr9 106635288 106636555 -35634889 - MER41B-int LTR ERV1 -4659 1287 1 4325 113 9 3 chr9 106636555 106637186 -35634258 - MER41B LTR ERV1 0 635 1 23 68 0 0 chr9 106637374 106637418 -35634026 + AT_rich Low_complexity Low_complexity 1 44 0 183 360 79 0 chr9 106637461 106637550 -35633894 + MIR3 SINE MIR 108 203 -5 239 368 96 7 chr9 106639946 106640082 -35631362 - L2 LINE L2 -2 3270 3123 232 188 42 0 chr9 106640562 106640610 -35630834 - L2 LINE L2 0 3313 3264 455 280 105 14 chr9 106640994 106641137 -35630307 + L2 LINE L2 3109 3264 -8 1886 109 35 21 chr9 106641896 106642181 -35629263 - AluSc SINE Alu -20 289 1 473 296 128 64 chr9 106642377 106643234 -35628210 + L1MEd LINE L1 59 970 -5149 1065 160 129 81 chr9 106643380 106643712 -35627732 - MER7A DNA MER2_type 0 346 1 313 130 19 0 chr9 106643732 106643786 -35627658 + AluSc SINE Alu 238 292 -7 1017 226 147 6 chr9 106645074 106645393 -35626051 + MLT1A1 LTR MaLR 2 365 0 509 248 163 0 chr9 106645593 106645746 -35625698 + MIR SINE MIR 8 185 -77 23 0 0 0 chr9 106646781 106646804 -35624640 + GC_rich Low_complexity Low_complexity 1 23 0 373 286 143 6 chr9 106647097 106647272 -35624172 - L2 LINE L2 -178 3135 2937 241 215 101 38 chr9 106647904 106647983 -35623461 - MIR SINE MIR -80 182 99 449 349 139 20 chr9 106648716 106649112 -35622332 - L3 LINE CR1 -19 1558 1116 271 303 158 71 chr9 106649338 106649354 -35622090 - L3 LINE CR1 -801 776 763 1809 98 108 39 chr9 106649354 106649640 -35621804 - AluSg SINE Alu -4 306 1 271 303 158 71 chr9 106649640 106650003 -35621441 - L3 LINE CR1 -814 763 364 221 271 132 42 chr9 106650005 106650149 -35621295 - L2 LINE L2 -3 3310 3154 296 333 93 0 chr9 106650175 106650304 -35621140 - L3 LINE CR1 -1216 361 221 21 36 0 0 chr9 106651980 106652008 -35619436 + AT_rich Low_complexity Low_complexity 1 28 0 1873 132 21 0 chr9 106653180 106653469 -35617975 - AluJb SINE Alu -17 295 1 192 336 55 70 chr9 106653626 106653754 -35617690 + MIR SINE MIR 21 146 -62 640 313 41 4 chr9 106654871 106655114 -35616330 - L2 LINE L2 0 3313 3062 1363 275 257 14 chr9 106655117 106655947 -35615497 - L2 LINE L2 -886 2428 1398 597 274 78 15 chr9 106656252 106656456 -35614988 + L2 LINE L2 2057 2273 -1041 2241 212 25 23 chr9 106656456 106656927 -35614517 - MER70A LTR ERVL 0 472 1 2706 158 79 7 chr9 106656933 106658234 -35613210 - MER70A-int LTR ERVL 0 5023 3534 7896 176 23 12 chr9 106658234 106658611 -35612833 - MER70A-int LTR ERVL -1974 3049 2678 2224 108 3 16 chr9 106658611 106658925 -35612519 - AluSp SINE Alu -1 312 3 7896 176 23 12 chr9 106658925 106659961 -35611483 - MER70A-int LTR ERVL -2345 2678 1620 4613 166 75 25 chr9 106659961 106660846 -35610598 - MER70A-int LTR ERVL -3833 1190 262 1495 187 107 89 chr9 106660883 106661343 -35610101 - MER70A LTR ERVL 0 472 5 1350 319 57 28 chr9 106661347 106661820 -35609624 + L2 LINE L2 2269 2755 -559 4091 147 61 4 chr9 106661839 106662549 -35608895 + Tigger2 DNA MER2_type 5 754 -1964 1053 123 137 4 chr9 106662606 106662833 -35608611 + Tigger2 DNA MER2_type 2461 2717 -1 438 264 121 28 chr9 106663055 106663237 -35608207 + L2 LINE L2 3114 3312 -1 185 247 56 22 chr9 106664816 106664905 -35606539 - MER5C DNA MER1_type -182 142 51 27 0 0 0 chr9 106667071 106667098 -35604346 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr9 106667480 106667501 -35603943 + AT_rich Low_complexity Low_complexity 1 21 0 1717 181 52 70 chr9 106667501 106667528 -35603916 - L1MA9 LINE L1 -40 6272 6246 1798 169 0 32 chr9 106667528 106667841 -35603603 + AluSx SINE Alu 3 305 -7 1717 181 52 70 chr9 106667841 106668311 -35603133 - L1MA9 LINE L1 -66 6246 5784 188 209 70 0 chr9 106668509 106668552 -35602892 + MER5A DNA MER1_type 87 132 -57 258 250 26 40 chr9 106669911 106669987 -35601457 + MER46A DNA MER2_type 44 118 -118 364 123 178 0 chr9 106670000 106670073 -35601371 + MER46A DNA MER2_type 151 236 0 748 210 125 0 chr9 106670942 106671118 -35600326 - MER3 DNA MER1_type 0 209 12 515 240 140 28 chr9 106671118 106671297 -35600147 - MIR SINE MIR -48 214 16 672 271 80 63 chr9 106671726 106672014 -35599430 - MLT1I LTR MaLR -41 368 98 254 346 0 20 chr9 106672775 106672876 -35598568 + 7SLRNA srpRNA srpRNA 101 199 -121 708 256 96 69 chr9 106673040 106673372 -35598072 - L2 LINE L2 -6 3307 2967 1714 172 0 10 chr9 106673444 106673741 -35597703 + AluJo SINE Alu 1 294 -18 1494 96 136 0 chr9 106674015 106674235 -35597209 - AluSx SINE Alu -9 303 54 436 275 93 34 chr9 106675558 106675936 -35595508 - L1MC/D LINE L1 -2135 5673 5274 2118 113 17 7 chr9 106676328 106676620 -35594824 - AluSc SINE Alu -14 295 1 930 193 99 14 chr9 106677498 106677710 -35593734 + MER46A DNA MER2_type 7 236 0 245 333 15 0 chr9 106678007 106678073 -35593371 - MIR SINE MIR -183 79 13 1585 168 107 23 chr9 106678170 106678480 -35592964 + MER1B DNA MER1_type 1 336 -1 299 355 58 8 chr9 106680712 106680833 -35590611 - L2 LINE L2 -10 3262 3136 2331 89 3 0 chr9 106681458 106681751 -35589693 + AluSp SINE Alu 6 299 -14 378 351 156 5 chr9 106683413 106683624 -35587820 - L2 LINE L2 -261 3052 2810 859 73 98 0 chr9 106683631 106683754 -35587690 + L1PA8 LINE L1 6033 6167 -5 214 246 46 0 chr9 106684031 106684096 -35587348 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 391 204 92 10 chr9 106685181 106685279 -35586165 - MIR SINE MIR -10 252 147 503 263 36 0 chr9 106686354 106686491 -35584953 - MER58B DNA MER1_type 0 341 200 233 378 108 0 chr9 106687062 106687173 -35584271 + L1MEc LINE L1 183 305 -6091 261 185 31 0 chr9 106687396 106687461 -35583983 + L1MEc LINE L1 855 921 -5475 1396 229 156 37 chr9 106687471 106688203 -35583241 + L1MEc LINE L1 974 1792 -4604 33 25 0 0 chr9 106688546 106688586 -35582858 + AT_rich Low_complexity Low_complexity 1 40 0 1950 141 14 10 chr9 106689090 106689387 -35582057 + AluSx SINE Alu 1 298 -14 31 51 0 39 chr9 106689495 106689573 -35581871 + AT_rich Low_complexity Low_complexity 1 75 0 219 222 0 0 chr9 106689764 106689809 -35581635 + (TG)n Simple_repeat Simple_repeat 2 46 0 470 305 90 0 chr9 106690863 106691030 -35580414 + MER91B DNA MER1_type 3 184 -6 575 289 48 44 chr9 106693350 106693578 -35577866 - MIR SINE MIR -5 257 29 858 313 44 50 chr9 106693781 106694213 -35577231 + L1ME LINE L1 2 432 -5638 2167 170 94 16 chr9 106694213 106694713 -35576731 - MER67A LTR ERV1 -2 541 3 858 313 44 50 chr9 106694713 106694775 -35576669 + L1ME LINE L1 432 493 -5577 395 153 56 0 chr9 106694775 106694847 -35576597 + MER70B LTR ERVL 1 76 -502 4311 178 63 7 chr9 106694847 106695688 -35575756 + MER70-int LTR ERVL 2595 3482 -1541 2424 171 64 5 chr9 106695697 106696220 -35575224 - L1MA9 LINE L1 -32 6271 5683 1353 150 44 11 chr9 106696224 106696561 -35574883 + MER70-int LTR ERVL 3347 3755 -1268 1303 150 66 4 chr9 106696559 106696786 -35574658 - MER70-int LTR ERVL -906 4117 3877 * 443 202 25 109 chr9 106696782 106696901 -35574543 + MER70-int LTR ERVL 3781 3889 -1134 * 5118 226 39 82 chr9 106696929 106696986 -35574458 - L1M4 LINE L1 -1198 4948 4890 2049 118 10 3 chr9 106696986 106697274 -35574170 + AluSx SINE Alu 1 290 -22 5118 226 39 82 chr9 106697274 106698159 -35573285 - L1M4 LINE L1 -1256 4890 3969 1778 87 0 0 chr9 106698159 106698388 -35573056 + AluY SINE Alu 73 301 -10 5118 226 39 82 chr9 106698388 106699608 -35571836 - L1M4 LINE L1 -2177 3969 2885 2311 110 0 0 chr9 106699608 106699917 -35571527 - AluY SINE Alu -2 309 1 5118 226 39 82 chr9 106699917 106700034 -35571410 - L1M4 LINE L1 -3261 2885 2765 1185 262 107 44 chr9 106700059 106700758 -35570686 + L1M4 LINE L1 3017 3759 -2387 1122 169 144 26 chr9 106700787 106701135 -35570309 + L1M4 LINE L1 4899 5287 -859 882 218 142 38 chr9 106701136 106701248 -35570196 + Charlie1 DNA MER1_type 1421 1520 -1241 2453 63 7 3 chr9 106701248 106701549 -35569895 - AluY SINE Alu -9 302 1 882 218 142 38 chr9 106701549 106701780 -35569664 + Charlie1 DNA MER1_type 1520 1800 -961 2685 42 0 3 chr9 106701793 106702105 -35569339 - AluY SINE Alu 0 311 1 2713 193 54 58 chr9 106702133 106702367 -35569077 + Charlie1 DNA MER1_type 1582 1815 -946 2637 42 3 0 chr9 106702367 106702677 -35568767 - AluY SINE Alu 0 311 1 2713 193 54 58 chr9 106702677 106703233 -35568211 + Charlie1 DNA MER1_type 1815 2369 -392 379 356 0 0 chr9 106703248 106703352 -35568092 - MIR SINE MIR -153 109 6 2255 95 3 29 chr9 106703436 106703752 -35567692 + AluSx SINE Alu 1 308 -4 269 306 175 6 chr9 106704338 106704498 -35566946 - MIR SINE MIR -56 206 20 185 282 13 64 chr9 106705979 106706057 -35565387 - MIR3 SINE MIR -37 171 98 212 419 79 22 chr9 106706200 106706477 -35564967 + L2 LINE L2 2945 3237 -35 963 146 6 6 chr9 106706490 106706661 -35564783 - L1MA4A LINE L1 0 6303 6133 619 200 0 25 chr9 106707786 106707906 -35563538 - FLAM_A SINE Alu -19 123 7 366 23 0 0 chr9 106708619 106708662 -35562782 + (TG)n Simple_repeat Simple_repeat 2 44 0 258 125 0 0 chr9 106708744 106708792 -35562652 + (TA)n Simple_repeat Simple_repeat 1 48 0 1671 128 72 8 chr9 106709099 106709388 -35562056 - AluSx SINE Alu 0 306 1 21 0 0 0 chr9 106709388 106709409 -35562035 + AT_rich Low_complexity Low_complexity 1 21 0 403 133 0 111 chr9 106709895 106709928 -35561516 + MADE1 DNA Mariner 1 36 -44 2061 129 3 0 chr9 106709928 106710223 -35561221 - AluSx SINE Alu -16 296 1 403 133 0 111 chr9 106710223 106710279 -35561165 + MADE1 DNA Mariner 36 80 0 491 340 35 5 chr9 106711818 106711847 -35559597 - MIR SINE MIR -11 251 224 2044 108 24 10 chr9 106711847 106712143 -35559301 - AluSq SINE Alu -13 300 1 491 340 35 5 chr9 106712143 106712313 -35559131 - MIR SINE MIR -38 224 46 21 0 0 0 chr9 106712932 106712953 -35558491 + AT_rich Low_complexity Low_complexity 1 21 0 265 264 82 0 chr9 106713514 106713624 -35557820 - L1ME4a LINE L1 -57 6064 5946 209 243 0 27 chr9 106713883 106713893 -35557551 + (TA)n Simple_repeat Simple_repeat 1 10 -62 1464 159 3 69 chr9 106713893 106714182 -35557262 - AluSx SINE Alu -7 305 36 209 243 0 27 chr9 106714182 106714245 -35557199 + (TA)n Simple_repeat Simple_repeat 10 72 0 233 261 0 0 chr9 106714387 106714433 -35557011 + L2 LINE L2 3262 3307 -6 23 0 0 0 chr9 106714595 106714618 -35556826 + AT_rich Low_complexity Low_complexity 1 23 0 193 73 24 24 chr9 106715977 106716018 -35555426 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 1638 107 0 0 chr9 106716078 106716293 -35555151 + AluSc SINE Alu 86 300 -9 28 0 0 0 chr9 106717392 106717420 -35554024 + AT_rich Low_complexity Low_complexity 1 28 0 287 327 47 9 chr9 106718198 106718305 -35553139 + L2 LINE L2 3162 3272 0 266 288 80 40 chr9 106718666 106718791 -35552653 - MIR SINE MIR -56 206 77 1662 264 128 34 chr9 106720426 106721622 -35549822 + L1MDb LINE L1 760 2047 -4359 213 284 0 32 chr9 106721893 106721988 -35549456 + CT-rich Low_complexity Low_complexity 4 95 0 885 221 27 62 chr9 106722033 106722436 -35549008 + L1MDb LINE L1 2101 2489 -3917 2562 343 67 26 chr9 106722436 106723946 -35547498 + ERVL LTR ERVL 1935 3505 -2259 1547 199 24 7 chr9 106723959 106724251 -35547193 + AluJo SINE Alu 1 297 -15 1103 339 8 0 chr9 106724387 106724741 -35546703 + LTR16A LTR ERVL 94 450 0 472 279 165 17 chr9 106724990 106725227 -35546217 - L3 LINE CR1 -178 1399 1128 499 285 86 80 chr9 106726293 106726492 -35544952 + MIR SINE MIR 2 200 -62 422 291 180 6 chr9 106726971 106727048 -35544396 - MIR SINE MIR -12 250 188 1804 146 101 3 chr9 106727048 106727376 -35544068 + MER46B DNA MER2_type 1 235 -1 422 291 180 6 chr9 106727376 106727470 -35543974 - MIR SINE MIR -74 188 49 380 211 95 11 chr9 106729328 106729423 -35542021 - MIR SINE MIR -70 192 90 280 274 0 0 chr9 106729490 106729552 -35541892 + MER63 DNA MER1_type 1001 1062 0 276 358 8 16 chr9 106729552 106729674 -35541770 - LTR16A LTR ERVL -162 288 168 4862 163 36 25 chr9 106730040 106730160 -35541284 - L1MA9 LINE L1 -22 6290 6173 186 71 0 0 chr9 106730160 106730188 -35541256 + (TG)n Simple_repeat Simple_repeat 1 28 0 4862 163 36 25 chr9 106730188 106730572 -35540872 - L1MA9 LINE L1 -139 6173 5795 244 0 0 53 chr9 106730572 106730610 -35540834 + (CA)n Simple_repeat Simple_repeat 2 37 0 4862 163 36 25 chr9 106730610 106731054 -35540390 - L1MA9 LINE L1 -517 5795 5331 3446 168 55 24 chr9 106731043 106731312 -35540132 + L1 LINE L1 4574 4833 -1313 * 1967 146 10 0 chr9 106731312 106731600 -35539844 - AluSx SINE Alu -21 291 1 3446 168 55 24 chr9 106731600 106732069 -35539375 + L1 LINE L1 4833 5335 -811 530 256 82 92 chr9 106734067 106734360 -35537084 - MLT1I LTR MaLR -49 360 71 304 151 57 0 chr9 106734471 106734524 -35536920 - MER116 DNA Mariner -24 56 1 190 380 39 23 chr9 106734831 106734960 -35536484 - L2 LINE L2 -443 2871 2741 324 278 68 74 chr9 106735308 106735470 -35535974 - L3 LINE CR1 -12 1565 1405 608 256 73 5 chr9 106736279 106736470 -35534974 + MER106A DNA MER1_type 1 204 -32 183 359 57 19 chr9 106737512 106737618 -35533826 - L2 LINE L2 -1 3271 3162 * 328 299 69 64 chr9 106737613 106737817 -35533627 - L2 LINE L2 -223 3049 2845 21 71 0 0 chr9 106737998 106738040 -35533404 + AT_rich Low_complexity Low_complexity 1 42 0 486 288 31 39 chr9 106738431 106738660 -35532784 + LTR33 LTR ERVL 292 518 -3 701 239 210 20 chr9 106739076 106739381 -35532063 - L1ME LINE L1 -391 5773 5411 301 125 36 0 chr9 106739408 106739464 -35531980 - L1MC/D LINE L1 -900 5459 5402 612 283 12 6 chr9 106739474 106739647 -35531797 - MLT1F LTR MaLR 0 542 369 422 319 9 0 chr9 106739693 106739806 -35531638 - MLT1F LTR MaLR -316 274 161 7197 236 82 18 chr9 106739820 106741815 -35529629 - L1MDa LINE L1 -4384 2156 34 244 309 15 0 chr9 106743580 106743648 -35527796 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 2207 112 0 0 chr9 106743797 106744093 -35527351 - AluSq SINE Alu -15 298 3 667 374 120 2 chr9 106744366 106744775 -35526669 - L2 LINE L2 -337 2977 2521 22 56 0 0 chr9 106745098 106745134 -35526310 + AT_rich Low_complexity Low_complexity 1 36 0 2439 170 68 8 chr9 106745134 106745634 -35525810 - L1MB3 LINE L1 -7 6176 5647 374 269 60 52 chr9 106745824 106745958 -35525486 + MIR SINE MIR 78 212 -50 615 247 0 0 chr9 106746065 106746215 -35525229 - L1MA10 LINE L1 -3 6331 6182 290 239 110 0 chr9 106746246 106746355 -35525089 - L1ME2 LINE L1 -152 6012 5892 325 295 52 58 chr9 106746593 106746766 -35524678 + L1ME4a LINE L1 5653 5824 -297 287 228 99 20 chr9 106747029 106747130 -35524314 + L1ME4a LINE L1 5961 6069 -52 4975 74 155 0 chr9 106747847 106748562 -35522882 + LTR12 LTR ERV1 1 826 0 1195 354 99 43 chr9 106748767 106750085 -35521359 + L2 LINE L2 1825 3223 -90 2742 141 5 0 chr9 106750186 106750618 -35520826 - MER57B LTR ERV1 0 434 1 319 208 156 0 chr9 106750624 106750701 -35520743 - L2 LINE L2 0 3272 3184 837 348 11 34 chr9 106751002 106751439 -35520005 - ERVL LTR ERVL -2493 3271 2845 22 35 0 0 chr9 106751480 106751509 -35519935 + AT_rich Low_complexity Low_complexity 1 29 0 227 344 185 16 chr9 106752747 106752936 -35518508 - MIR SINE MIR -20 242 22 264 185 0 0 chr9 106753210 106753264 -35518180 + MLT2C1 LTR ERVL 1 54 -343 7260 103 117 87 chr9 106753264 106754902 -35516542 + pTR5 LTR ERV1 147 2438 0 1102 183 92 78 chr9 106754905 106755200 -35516244 + MLT2C1 LTR ERVL 52 350 -47 35 41 0 0 chr9 106755202 106755251 -35516193 + AT_rich Low_complexity Low_complexity 1 49 0 270 146 0 0 chr9 106755272 106755313 -35516131 + MLT2C1 LTR ERVL 357 397 0 181 328 45 0 chr9 106756020 106756087 -35515357 - L2 LINE L2 -5 3308 3239 186 320 73 50 chr9 106756176 106756395 -35515049 - L2 LINE L2 -212 3060 2837 213 267 341 0 chr9 106756497 106756632 -35514812 + MER5A DNA MER1_type 9 189 0 846 277 76 92 chr9 106756760 106757259 -35514185 + L2 LINE L2 2823 3313 0 373 188 0 35 chr9 106757725 106757810 -35513634 - MER3 DNA MER1_type -109 100 19 235 47 0 47 chr9 106758288 106758331 -35513113 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4833 158 35 12 chr9 106758602 106759456 -35511988 + L1MCa LINE L1 41 914 -5512 4433 139 21 6 chr9 106759458 106760161 -35511283 + MER50 LTR ERV1 3 716 -18 1484 106 5 0 chr9 106760161 106760379 -35511065 + L1MCa LINE L1 917 1135 -5291 225 227 114 0 chr9 106760385 106760473 -35510971 - L1MC4 LINE L1 -1339 6703 6606 * 2340 164 55 33 chr9 106760463 106761159 -35510285 + L1MCa LINE L1 1148 1948 -4478 1356 91 0 10 chr9 106761160 106761359 -35510085 - L1MA9 LINE L1 0 6312 6116 269 26 26 0 chr9 106761362 106761400 -35510044 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2000 109 0 7 chr9 106761405 106761680 -35509764 - AluSg SINE Alu -37 273 1 299 222 0 0 chr9 106761701 106761755 -35509689 + Tigger5 DNA MER2_type 1 54 -2269 * 348 236 14 0 chr9 106761725 106761797 -35509647 + Tigger5 DNA MER2_type 2251 2323 0 1208 147 19 5 chr9 106761797 106762008 -35509436 - L1MA9 LINE L1 -201 6111 5898 2411 145 26 26 chr9 106763082 106763509 -35507935 + MSTC LTR MaLR 1 427 -1 1953 131 64 12 chr9 106763752 106764095 -35507349 + MER46B DNA MER2_type 1 236 0 920 202 16 12 chr9 106764407 106764715 -35506729 - MSTD LTR MaLR -2 394 4 276 254 198 51 chr9 106764974 106765151 -35506293 + MIR SINE MIR 31 233 -29 2500 96 31 6 chr9 106765964 106766319 -35505125 - THE1B LTR MaLR 0 364 1 2181 162 88 7 chr9 106766367 106766823 -35504621 - L1MA9 LINE L1 -5 6307 5815 3777 172 13 49 chr9 106766849 106767277 -35504167 - L1MA8 LINE L1 -4 6287 5845 1874 163 3 0 chr9 106767277 106767571 -35503873 + AluSx SINE Alu 1 295 -17 3777 172 13 49 chr9 106767571 106767681 -35503763 - L1MA8 LINE L1 -446 5845 5733 219 114 0 0 chr9 106767681 106767716 -35503728 + (CA)n Simple_repeat Simple_repeat 2 36 0 3777 172 13 49 chr9 106767716 106768018 -35503426 - L1MA8 LINE L1 -558 5733 5476 40800 57 6 25 chr9 106768022 106772160 -35499284 - L1PA5 LINE L1 -2 6152 2024 1156 64 51 13 chr9 106772160 106772317 -35499127 + AluSq SINE Alu 7 169 -144 40800 57 6 25 chr9 106772317 106774289 -35497155 - L1PA5 LINE L1 -4130 2024 15 1242 155 4 3 chr9 106774290 106774592 -35496852 - L1MA8 LINE L1 -743 5403 5188 22 56 0 0 chr9 106774601 106774637 -35496807 + AT_rich Low_complexity Low_complexity 1 36 0 288 273 349 0 chr9 106774639 106774771 -35496673 - MIR SINE MIR -2 260 83 2848 157 62 12 chr9 106774823 106775391 -35496053 + L1MA8 LINE L1 5688 6283 -8 189 0 0 0 chr9 106776078 106776099 -35495345 + (TG)n Simple_repeat Simple_repeat 2 22 0 290 308 145 26 chr9 106776296 106776530 -35494914 - L3 LINE CR1 -69 1508 1247 401 363 26 21 chr9 106776531 106776724 -35494720 + MIR3 SINE MIR 9 202 -6 440 283 140 101 chr9 106776833 106777239 -35494205 + MLT1J2 LTR MaLR 19 440 -10 183 129 0 0 chr9 106778983 106779014 -35492430 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 317 286 81 50 chr9 106779425 106779586 -35491858 - MIR SINE MIR -71 191 26 21 57 0 0 chr9 106779765 106779800 -35491644 + AT_rich Low_complexity Low_complexity 1 35 0 390 255 98 33 chr9 106779883 106780036 -35491408 + MIR SINE MIR 100 262 0 228 235 82 0 chr9 106780597 106780682 -35490762 - L1P LINE L1 -745 5409 5318 810 248 49 69 chr9 106780988 106781294 -35490150 + LTR41 LTR ERVL 468 767 -6 300 312 32 0 chr9 106781432 106781525 -35489919 - MER20 DNA MER1_type 0 219 124 2118 120 0 3 chr9 106782234 106782537 -35488907 + AluSx SINE Alu 1 302 0 23 0 0 0 chr9 106783578 106783601 -35487843 + AT_rich Low_complexity Low_complexity 1 23 0 782 306 61 20 chr9 106783725 106784022 -35487422 + MLT2F LTR ERVL 3 311 -352 305 319 28 14 chr9 106784024 106784165 -35487279 + MLT2F LTR ERVL 519 661 -2 302 331 150 33 chr9 106784326 106785277 -35486167 - L2 LINE L2 -958 2356 1294 2486 111 8 36 chr9 106785428 106785814 -35485630 - THE1C LTR MaLR 0 375 1 322 336 71 0 chr9 106786070 106786183 -35485261 - L2 LINE L2 -15 3257 3137 250 322 11 0 chr9 106786965 106787055 -35484389 + L2 LINE L2 2946 3036 -236 6640 69 8 271 chr9 106787067 106788944 -35482500 - SVA Other Other 0 1386 3 300 365 9 9 chr9 106789271 106789386 -35482058 - L2 LINE L2 -3 3269 3155 404 332 34 59 chr9 106790328 106790566 -35480878 - MIR SINE MIR -10 252 21 217 289 13 26 chr9 106790662 106790738 -35480706 + (CATA)n Simple_repeat Simple_repeat 2 76 0 824 140 0 0 chr9 106792332 106792446 -35478998 + FLAM_C SINE Alu 8 121 -22 448 201 116 70 chr9 106793756 106793955 -35477489 + L1MEd LINE L1 13 220 -5899 1261 197 95 37 chr9 106794699 106795024 -35476420 + MER2 DNA MER2_type 1 344 0 2658 29 0 7 chr9 106795047 106795354 -35476090 - AluY SINE Alu -6 305 1 302 331 53 15 chr9 106795838 106795971 -35475473 - MIR SINE MIR -93 169 32 1801 213 93 12 chr9 106796605 106797037 -35474407 + MLT1C LTR MaLR 1 467 0 2135 134 0 0 chr9 106797140 106797432 -35474012 - AluSq SINE Alu -19 294 3 356 352 164 0 chr9 106797520 106797739 -35473705 - MIR SINE MIR -1 261 7 234 213 45 155 chr9 106797812 106797967 -35473477 + L2 LINE L2 3175 3312 -1 1227 154 45 83 chr9 106798142 106798479 -35472965 + MER33 DNA MER1_type 1 324 0 939 112 6 77 chr9 106798638 106798808 -35472636 + AluSg/x SINE Alu 130 287 -25 683 54 11 0 chr9 106798814 106798906 -35472538 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 356 135 34 22 chr9 106799023 106799112 -35472332 + GA-rich Low_complexity Low_complexity 3 92 0 496 258 119 33 chr9 106799223 106799467 -35471977 - L1ME3A LINE L1 -12 6158 5894 1168 293 54 28 chr9 106799647 106800220 -35471224 + HAL1 LINE L1 1215 1802 -705 22 0 0 0 chr9 106800881 106800903 -35470541 + AT_rich Low_complexity Low_complexity 1 22 0 535 302 129 61 chr9 106801012 106801485 -35469959 - LTR67 LTR ERVL -22 535 31 2251 83 0 17 chr9 106801523 106801825 -35469619 - AluSq SINE Alu -16 297 1 24 0 0 0 chr9 106801833 106801857 -35469587 + AT_rich Low_complexity Low_complexity 1 24 0 2138 227 78 0 chr9 106802625 106803150 -35468294 - L1ME3 LINE L1 -7 6155 5590 46 54 0 0 chr9 106803659 106803733 -35467711 + AT_rich Low_complexity Low_complexity 1 74 0 23 54 0 0 chr9 106804866 106804903 -35466541 + AT_rich Low_complexity Low_complexity 1 37 0 5015 163 32 13 chr9 106804903 106806660 -35464784 - L1PB4 LINE L1 -3 6153 4364 2123 129 7 0 chr9 106806787 106807082 -35464362 - AluSx SINE Alu -15 297 1 230 267 111 35 chr9 106807659 106807831 -35463613 + L1ME3A LINE L1 5756 5940 -230 485 136 91 0 chr9 106808212 106808300 -35463144 + MER4A LTR ERV1 3 98 -566 1851 129 3 72 chr9 106808300 106808671 -35462773 + MER4A LTR ERV1 261 664 0 325 147 107 13 chr9 106808983 106809058 -35462386 + LTR8A LTR ERV1 1 82 -609 1934 171 34 44 chr9 106809058 106809622 -35461822 + LTR10E LTR ERV1 1 618 -6 296 260 14 0 chr9 106809618 106809691 -35461753 + MER87 LTR ERV1 71 144 -397 * 956 235 137 71 chr9 106809691 106810264 -35461180 + LTR8A LTR ERV1 125 714 -13 370 290 145 16 chr9 106810827 106811013 -35460431 - MIR SINE MIR -6 256 47 357 233 0 23 chr9 106811101 106811187 -35460257 - Charlie4 DNA MER1_type -18 1943 1860 641 110 0 20 chr9 106811340 106811440 -35460004 + MER4A LTR ERV1 1 98 -566 1746 152 8 41 chr9 106811440 106811731 -35459713 + MER4A LTR ERV1 261 598 -66 4437 73 2 2 chr9 106811731 106812295 -35459149 + LTR6A LTR ERV1 1 564 0 1746 152 8 41 chr9 106812295 106812358 -35459086 + MER4A LTR ERV1 598 662 -2 306 362 39 8 chr9 106812592 106812719 -35458725 + L2 LINE L2 3134 3264 -8 25 0 0 0 chr9 106814082 106814107 -35457337 + AT_rich Low_complexity Low_complexity 1 25 0 274 352 56 14 chr9 106814231 106814373 -35457071 + MIR SINE MIR 1 146 -62 663 246 11 11 chr9 106814373 106814552 -35456892 + L1MB8 LINE L1 5999 6177 -1 335 305 0 29 chr9 106814902 106815007 -35456437 - MIR SINE MIR -149 113 12 27 29 0 0 chr9 106815142 106815176 -35456268 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr9 106815394 106815423 -35456021 + AT_rich Low_complexity Low_complexity 1 29 0 954 239 19 0 chr9 106815703 106815912 -35455532 - MER58A DNA MER1_type 0 224 12 2409 225 93 5 chr9 106817755 106818495 -35452949 + L1MEc LINE L1 2173 2931 -3284 3001 231 12 21 chr9 106818733 106818973 -35452471 - MER82 DNA MER2_type -1 652 411 2185 159 50 13 chr9 106818973 106819369 -35452075 + LTR57 LTR ERVL 1 411 0 3001 231 12 21 chr9 106819369 106819786 -35451658 - MER82 DNA MER2_type -242 411 1 416 292 131 12 chr9 106819848 106820016 -35451428 - L2 LINE L2 -6 3307 3120 336 346 15 23 chr9 106820031 106820161 -35451283 - MIR SINE MIR -125 137 9 698 224 128 15 chr9 106820269 106820465 -35450979 + MER20 DNA MER1_type 2 219 0 4596 146 89 11 chr9 106820767 106821674 -35449770 + L1MA4A LINE L1 5317 6303 0 228 191 95 16 chr9 106821746 106821809 -35449635 - L2 LINE L2 -1 3271 3204 2123 92 24 0 chr9 106821888 106822183 -35449261 - AluSg1 SINE Alu -7 302 1 214 216 0 0 chr9 106822199 106822236 -35449208 - MIR SINE MIR -62 146 110 268 281 0 0 chr9 106823610 106823667 -35447777 - MER115 DNA AcHobo -1 692 636 607 373 81 12 chr9 106823714 106824049 -35447395 - MER115 DNA AcHobo -335 358 1 237 270 75 132 chr9 106824052 106824370 -35447074 + L3 LINE CR1 1233 1532 -45 239 217 0 0 chr9 106824567 106824613 -35446831 + L3b LINE CR1 1538 1583 0 2192 128 0 0 chr9 106824627 106824933 -35446511 + AluSx SINE Alu 3 308 -4 31 0 0 0 chr9 106825304 106825335 -35446109 + AT_rich Low_complexity Low_complexity 1 31 0 38 81 0 0 chr9 106825569 106825656 -35445788 + AT_rich Low_complexity Low_complexity 1 87 0 242 257 0 14 chr9 106826147 106826217 -35445227 - L1M1 LINE L1 -4664 2901 2833 711 257 131 41 chr9 106826321 106826932 -35444512 - L1MEd LINE L1 -4862 1257 592 204 182 0 0 chr9 106827341 106827385 -35444059 + (CA)n Simple_repeat Simple_repeat 1 44 0 1098 36 7 0 chr9 106827564 106827702 -35443742 + L1PA4 LINE L1 6015 6153 -2 446 241 117 45 chr9 106827716 106827874 -35443570 - L1ME LINE L1 -302 5819 5671 294 73 0 0 chr9 106827874 106827915 -35443529 + (CA)n Simple_repeat Simple_repeat 2 42 0 446 241 117 45 chr9 106827915 106828031 -35443413 - L1ME LINE L1 -450 5671 5565 2363 132 5 18 chr9 106830862 106831242 -35440202 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr9 106831243 106831264 -35440180 + AT_rich Low_complexity Low_complexity 1 21 0 477 96 82 0 chr9 106831710 106831783 -35439661 - MADE1 DNA Mariner 0 80 2 205 349 47 0 chr9 106832099 106832205 -35439239 - L2 LINE L2 -213 3059 2949 218 346 65 38 chr9 106832580 106832765 -35438679 + L3 LINE CR1 775 964 -613 251 348 65 43 chr9 106832766 106833045 -35438399 + L3 LINE CR1 1188 1472 -105 203 192 77 0 chr9 106833261 106833313 -35438131 - MIR SINE MIR -83 179 124 2512 54 3 0 chr9 106834306 106834603 -35436841 - AluY SINE Alu -11 300 3 207 300 67 0 chr9 106834929 106834989 -35436455 + MIR SINE MIR 79 142 -120 1845 181 3 7 chr9 106835993 106836297 -35435147 - AluJb SINE Alu -9 303 1 212 292 0 0 chr9 106836421 106836469 -35434975 + L2 LINE L2 3225 3272 0 999 248 13 17 chr9 106837229 106837463 -35433981 + MIR SINE MIR 2 234 -28 300 234 0 0 chr9 106837466 106837530 -35433914 + L1MC4 LINE L1 6640 6703 -1339 277 200 0 0 chr9 106837532 106837587 -35433857 - L1MC4 LINE L1 -1339 6703 6649 2361 214 29 34 chr9 106837726 106838283 -35433161 - MLT2B3 LTR ERVL 0 554 1 320 309 46 13 chr9 106838427 106838579 -35432865 - MIR SINE MIR -6 256 100 1708 164 3 11 chr9 106838603 106838889 -35432555 + AluJb SINE Alu 1 284 -28 180 0 0 0 chr9 106838980 106839000 -35432444 + (T)n Simple_repeat Simple_repeat 1 20 0 642 263 11 42 chr9 106839104 106839294 -35432150 - MIR SINE MIR -9 253 70 182 304 13 25 chr9 106839315 106839394 -35432050 - MIR SINE MIR -6 256 179 968 252 9 0 chr9 106839710 106839932 -35431512 - MER58A DNA MER1_type 0 224 1 600 267 31 6 chr9 106840849 106841010 -35430434 + MIR SINE MIR 2 166 -96 243 295 53 11 chr9 106841409 106841504 -35429940 - MER91A DNA MER1_type -89 107 9 444 282 125 75 chr9 106841510 106841911 -35429533 + MLT1J LTR MaLR 60 444 -2 560 249 99 5 chr9 106842318 106842519 -35428925 - LTR33A LTR ERVL -4 519 300 1081 191 177 10 chr9 106842743 106843031 -35428413 - L1MA4 LINE L1 -857 5289 4954 509 143 15 75 chr9 106843029 106843162 -35428282 + L1MA4 LINE L1 5273 5397 -906 * 1114 58 0 0 chr9 106843162 106843299 -35428145 + L1PA3 LINE L1 6015 6152 -3 4976 135 25 47 chr9 106843305 106844277 -35427167 + L1MA4 LINE L1 5352 6298 -2 571 332 82 0 chr9 106845347 106845555 -35425889 - MIR SINE MIR -1 261 37 216 274 86 139 chr9 106846438 106846777 -35424667 + L2 LINE L2 2910 3230 -42 216 214 0 0 chr9 106846797 106846839 -35424605 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 210 385 87 14 chr9 106847802 106848010 -35423434 - L2 LINE L2 -225 3047 2825 2259 108 0 3 chr9 106848322 106848618 -35422826 - AluSg SINE Alu -15 295 1 287 303 32 85 chr9 106848620 106848808 -35422636 + MIR SINE MIR 80 257 -5 783 216 28 47 chr9 106848841 106849054 -35422390 + MER3 DNA MER1_type 1 209 0 29 28 0 0 chr9 106849078 106849114 -35422330 + AT_rich Low_complexity Low_complexity 1 36 0 2097 134 17 0 chr9 106849295 106849594 -35421850 + AluSq SINE Alu 1 304 -9 22 0 0 0 chr9 106849657 106849679 -35421765 + AT_rich Low_complexity Low_complexity 1 22 0 2474 51 7 0 chr9 106849975 106850270 -35421174 + AluY SINE Alu 1 297 -14 7374 127 41 35 chr9 106850571 106851245 -35420199 - HSMAR2 DNA Mariner -1 1301 614 1743 157 16 7 chr9 106851245 106851550 -35419894 + L1PB3 LINE L1 5846 6153 -1 7374 127 41 35 chr9 106851550 106852167 -35419277 - HSMAR2 DNA Mariner -688 614 2 216 0 0 0 chr9 106853813 106853837 -35417607 + (T)n Simple_repeat Simple_repeat 1 24 0 196 257 171 14 chr9 106853981 106854051 -35417393 + L2 LINE L2 3178 3258 -14 739 216 13 82 chr9 106854272 106854504 -35416940 + MER112 DNA MER1_type 11 226 -34 673 246 0 28 chr9 106854840 106855019 -35416425 + MER5B DNA MER1_type 5 178 0 302 97 26 53 chr9 106855287 106855400 -35416044 + (TTATA)n Simple_repeat Simple_repeat 3 112 0 202 216 0 0 chr9 106855403 106855440 -35416004 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 2573 56 0 0 chr9 106855440 106855744 -35415700 - AluY SINE Alu -7 304 1 193 29 29 29 chr9 106855745 106855780 -35415664 + (TTATA)n Simple_repeat Simple_repeat 5 39 0 442 344 19 19 chr9 106855780 106855934 -35415510 - MER5A DNA MER1_type -25 164 11 197 373 100 33 chr9 106856289 106856530 -35414914 - L2 LINE L2 -2 3270 3014 231 286 48 0 chr9 106856591 106856654 -35414790 + MER5A DNA MER1_type 124 189 0 2462 121 28 28 chr9 106856751 106857028 -35414416 + MSTA LTR MaLR 1 280 -148 2421 70 0 7 chr9 106857028 106857328 -35414116 + AluY SINE Alu 1 298 -13 2462 121 28 28 chr9 106857328 106857472 -35413972 + MSTA LTR MaLR 279 422 -6 23956 139 6 17 chr9 106857629 106860248 -35411196 + L1PA8A LINE L1 1 2646 -3800 222 37 0 0 chr9 106860248 106860275 -35411169 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23956 139 6 17 chr9 106860275 106861258 -35410186 + L1PA8A LINE L1 2646 3638 -2808 2360 96 0 19 chr9 106861258 106861572 -35409872 + AluSg SINE Alu 1 308 -2 23956 139 6 17 chr9 106861572 106864409 -35407035 + L1PA8A LINE L1 3638 6441 -5 282 278 28 0 chr9 106864729 106864801 -35406643 - L2 LINE L2 -4 3309 3236 30 27 0 0 chr9 106865461 106865498 -35405946 + AT_rich Low_complexity Low_complexity 1 37 0 244 317 0 0 chr9 106866963 106867023 -35404421 - MIR SINE MIR -196 66 7 423 0 0 0 chr9 106867823 106867870 -35403574 + (CA)n Simple_repeat Simple_repeat 2 48 0 1048 268 74 40 chr9 106868050 106868430 -35403014 + L2 LINE L2 2921 3313 0 182 321 19 0 chr9 106869318 106869371 -35402073 - L2 LINE L2 -14 3258 3205 301 273 73 9 chr9 106869449 106869559 -35401885 - MIR SINE MIR -109 153 37 271 294 29 39 chr9 106870032 106870134 -35401310 + L2 LINE L2 3212 3312 -1 417 141 0 0 chr9 106870343 106870414 -35401030 - L1 LINE L1 -1910 4236 4166 298 328 88 16 chr9 106870796 106870921 -35400523 + L2 LINE L2 3138 3271 -1 823 203 11 6 chr9 106871772 106871949 -35399495 - MLT1A2 LTR MaLR 0 374 197 481 233 138 32 chr9 106872770 106872959 -35398485 + MER3 DNA MER1_type 1 209 0 1111 171 58 105 chr9 106873791 106874153 -35397291 - MLT1A1 LTR MaLR -2 363 19 429 333 64 17 chr9 106874320 106874554 -35396890 - L2 LINE L2 -24 3289 3045 271 253 69 11 chr9 106876270 106876357 -35395087 - MIR SINE MIR -149 113 22 196 272 11 65 chr9 106876600 106876692 -35394752 + L2 LINE L2 3226 3312 -1 680 291 71 41 chr9 106877599 106877963 -35393481 - L2 LINE L2 0 3313 2939 212 302 56 86 chr9 106878274 106878542 -35392902 - L2 LINE L2 -922 2392 2133 247 267 121 17 chr9 106879038 106879154 -35392290 + MIR SINE MIR 8 135 -127 282 349 20 40 chr9 106879685 106879834 -35391610 + MIR SINE MIR 32 177 -85 310 82 20 0 chr9 106880231 106880280 -35391164 + MADE1 DNA Mariner 31 80 0 180 0 0 0 chr9 106880294 106880314 -35391130 + (A)n Simple_repeat Simple_repeat 1 20 0 2020 71 41 0 chr9 106880318 106880585 -35390859 + AluY SINE Alu 20 297 -14 899 231 78 29 chr9 106881314 106881622 -35389822 + LTR41 LTR ERVL 1 323 -450 2374 94 0 10 chr9 106881892 106882200 -35389244 - AluSc SINE Alu -4 305 1 244 208 0 0 chr9 106882213 106882266 -35389178 + LTR41 LTR ERVL 711 763 -10 2014 160 57 26 chr9 106882319 106882841 -35388603 + MLT2A2 LTR ERVL 1 554 0 424 324 28 11 chr9 106882847 106883029 -35388415 - MIR SINE MIR -6 256 72 258 367 124 12 chr9 106883878 106884047 -35387397 - MIR3 SINE MIR -4 204 17 21 57 0 0 chr9 106884200 106884235 -35387209 + AT_rich Low_complexity Low_complexity 1 35 0 2235 92 10 0 chr9 106884387 106884679 -35386765 - AluSq SINE Alu -18 295 1 2008 128 17 0 chr9 106885071 106885360 -35386084 - AluSx SINE Alu -18 294 1 876 311 101 19 chr9 106885400 106885815 -35385629 + MLT1J2 LTR MaLR 2 450 0 1050 185 9 19 chr9 106885959 106886175 -35385269 - L1PA16 LINE L1 -1 6165 5952 2367 42 0 0 chr9 106887374 106887660 -35383784 - L1PA4 LINE L1 -4 6151 5866 2095 146 3 0 chr9 106887797 106888106 -35383338 + AluSx SINE Alu 1 310 -2 813 258 172 18 chr9 106888968 106889294 -35382150 - MLT1E LTR MaLR 0 593 218 1014 198 0 0 chr9 106889329 106889506 -35381938 - AluJb SINE Alu -7 305 129 450 127 0 0 chr9 106889506 106889577 -35381867 + (TTTTC)n Simple_repeat Simple_repeat 2 72 0 624 201 8 67 chr9 106889612 106889785 -35381659 - MLT1E LTR MaLR -411 179 15 1469 67 0 19 chr9 106890624 106890832 -35380612 - L1PA13 LINE L1 0 6163 5960 379 296 33 48 chr9 106891768 106891995 -35379449 + MLT1J2 LTR MaLR 52 276 -170 404 116 0 14 chr9 106892945 106893014 -35378430 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 1637 191 10 24 chr9 106893014 106893308 -35378136 - AluJb SINE Alu -22 290 1 403 272 100 54 chr9 106893505 106893766 -35377678 + L1MEd LINE L1 666 938 -5181 245 294 62 27 chr9 106894087 106894250 -35377194 + L1ME LINE L1 5474 5654 -508 231 333 17 0 chr9 106894260 106894377 -35377067 + L1ME LINE L1 5708 5826 -336 2342 76 7 0 chr9 106895072 106895361 -35376083 - AluY SINE Alu -20 291 1 24 32 0 0 chr9 106896105 106896136 -35375308 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr9 106896362 106896397 -35375047 + AT_rich Low_complexity Low_complexity 1 35 0 566 330 56 14 chr9 106896645 106896930 -35374514 - MLT1I LTR MaLR 0 409 113 317 269 28 28 chr9 106898190 106898298 -35373146 - MER5B DNA MER1_type -10 179 64 199 281 23 55 chr9 106898197 106898325 -35373119 + MER5A DNA MER1_type 27 150 -39 * 1871 125 14 7 chr9 106898470 106898758 -35372686 - AluSx SINE Alu -20 292 3 543 31 0 0 chr9 106898903 106898968 -35372476 + (CA)n Simple_repeat Simple_repeat 2 66 0 207 0 0 0 chr9 106899364 106899387 -35372057 + (TTTTC)n Simple_repeat Simple_repeat 4 26 0 626 272 56 0 chr9 106899691 106899904 -35371540 + HsTC2 DNA Tc2 73 297 -1601 183 80 0 0 chr9 106900220 106900245 -35371199 + (A)n Simple_repeat Simple_repeat 1 25 0 325 267 15 38 chr9 106900335 106900466 -35370978 + MLT1J LTR MaLR 320 447 -64 1332 174 59 86 chr9 106900659 106901033 -35370411 - MLT1A1 LTR MaLR -1 364 1 859 229 42 0 chr9 106902669 106902861 -35368583 - MLT1C LTR MaLR 0 467 268 441 278 0 105 chr9 106903071 106903197 -35368247 - MER5B DNA MER1_type -6 172 71 2292 102 3 0 chr9 106903197 106903501 -35367943 - AluY SINE Alu -6 305 1 441 278 0 105 chr9 106903501 106903565 -35367879 - MER5B DNA MER1_type -107 71 2 523 227 17 17 chr9 106904708 106904827 -35366617 - L2 LINE L2 -2 3311 3193 278 274 11 21 chr9 106905711 106905806 -35365638 + CT-rich Low_complexity Low_complexity 3 96 0 348 198 143 11 chr9 106906018 106906109 -35365335 + MER63 DNA MER1_type 679 781 -280 2131 126 14 3 chr9 106906958 106907307 -35364137 + L1MA6 LINE L1 5948 6300 0 3094 108 21 43 chr9 106907671 106908187 -35363257 - LTR10B LTR ERV1 0 505 1 185 311 146 10 chr9 106908832 106908935 -35362509 - MER5A DNA MER1_type -66 123 7 387 0 0 0 chr9 106910142 106910185 -35361259 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 818 279 214 33 chr9 106910461 106910891 -35360553 + L2 LINE L2 2804 3311 -2 525 320 90 11 chr9 106911268 106911634 -35359810 - L1ME LINE L1 -342 5779 5385 2618 107 0 0 chr9 106911971 106912326 -35359118 - THE1A LTR MaLR 0 355 1 270 262 76 35 chr9 106912499 106912644 -35358800 - L1ME LINE L1 -1252 4894 4744 215 241 0 0 chr9 106912679 106912733 -35358711 + T-rich Low_complexity Low_complexity 1 54 0 339 25 0 0 chr9 106913879 106913919 -35357525 + (T)n Simple_repeat Simple_repeat 1 40 0 3433 92 92 2 chr9 106914985 106915493 -35355951 - MER41A LTR ERV1 0 554 1 28 0 0 0 chr9 106916320 106916348 -35355096 + AT_rich Low_complexity Low_complexity 1 28 0 2296 74 0 0 chr9 106917031 106917315 -35354129 - AluY SINE Alu -11 300 17 377 261 17 26 chr9 106918042 106918157 -35353287 + L1ME LINE L1 5527 5640 -481 315 181 28 42 chr9 106918169 106918241 -35353203 + L1ME LINE L1 5570 5640 -481 315 181 28 42 chr9 106918253 106918325 -35353119 + L1ME LINE L1 5570 5640 -481 833 266 30 35 chr9 106918337 106918676 -35352768 + L1ME4a LINE L1 5570 5906 -215 23 0 0 0 chr9 106919429 106919452 -35351992 + AT_rich Low_complexity Low_complexity 1 23 0 357 310 38 112 chr9 106919699 106920064 -35351380 + L2 LINE L2 2853 3190 -82 180 260 87 77 chr9 106920057 106920161 -35351283 + L3 LINE CR1 1432 1536 -41 * 693 303 39 4 chr9 106920420 106920651 -35350793 - MIR SINE MIR 0 262 24 207 281 150 42 chr9 106920860 106921027 -35350417 + L2 LINE L2 2637 2821 -493 2942 176 12 18 chr9 106921228 106921740 -35349704 - MLT2B1 LTR ERVL -10 510 2 324 197 30 0 chr9 106921846 106921912 -35349532 - LTR16A LTR ERVL -112 338 271 757 215 78 66 chr9 106921912 106922336 -35349108 - MLT1D LTR MaLR 0 467 1 394 284 108 14 chr9 106922472 106922620 -35348824 + L2 LINE L2 3111 3272 0 214 294 59 69 chr9 106923171 106923273 -35348171 + MIR SINE MIR 152 252 -10 550 144 0 90 chr9 106924569 106924625 -35346819 + MER3 DNA MER1_type 12 55 -107 549 110 0 0 chr9 106924625 106924716 -35346728 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 550 144 0 90 chr9 106924716 106924770 -35346674 + MER3 DNA MER1_type 55 112 -97 2190 120 0 10 chr9 106924770 106925079 -35346365 + AluSx SINE Alu 1 306 -6 8462 100 32 45 chr9 106925144 106926511 -35344933 - SVA Other Other 0 1386 37 185 335 149 32 chr9 106926741 106926989 -35344455 + L2 LINE L2 2510 2786 -528 14624 126 9 9 chr9 106927163 106930326 -35341118 - L1PA10 LINE L1 -5 6163 3002 1703 164 17 27 chr9 106930567 106930859 -35340585 + AluJo SINE Alu 1 289 -23 25 31 0 0 chr9 106930861 106930893 -35340551 + AT_rich Low_complexity Low_complexity 1 32 0 206 356 107 9 chr9 106930951 106931167 -35340277 - L2 LINE L2 -1092 2222 1986 315 300 154 31 chr9 106931568 106931698 -35339746 - L2 LINE L2 0 3272 3127 462 256 107 18 chr9 106932116 106932284 -35339160 - MER117 DNA MER1_type -14 183 1 535 330 78 17 chr9 106932404 106932634 -35338810 - MIR SINE MIR -4 258 15 307 295 81 57 chr9 106933001 106933211 -35338233 + L1ME LINE L1 5576 5790 -331 292 329 0 0 chr9 106933845 106933930 -35337514 - MIR SINE MIR -11 251 167 1284 362 43 25 chr9 106934606 106935616 -35335828 + ERVL LTR ERVL 4359 5386 -378 236 301 21 21 chr9 106935803 106935896 -35335548 + LTR16B LTR ERVL 240 332 -132 840 93 0 31 chr9 106936399 106936528 -35334916 - MSTA-int LTR MaLR -13 1567 1443 * 1171 147 16 0 chr9 106936518 106936709 -35334735 - MSTA-int LTR MaLR -950 630 437 8831 143 7 34 chr9 106936711 106938195 -35333249 - MSTA-int LTR MaLR -134 1446 3 992 184 103 18 chr9 106938197 106938420 -35333024 - MSTA LTR MaLR 0 428 187 7283 41 0 0 chr9 106938437 106939318 -35332126 - L1PA5 LINE L1 -3 6151 5271 1354 31 0 0 chr9 106939317 106939480 -35331964 + L1PA5 LINE L1 5086 5248 -898 * 767 158 190 6 chr9 106939480 106939638 -35331806 - MSTA LTR MaLR -227 201 15 256 115 0 39 chr9 106939742 106939794 -35331650 + L1MA9 LINE L1 6263 6312 0 1502 231 43 66 chr9 106939816 106940328 -35331116 - MLT1D LTR MaLR -5 500 1 417 298 49 26 chr9 106940454 106940803 -35330641 + L1ME1 LINE L1 1262 1618 -4924 2265 250 55 26 chr9 106940811 106941727 -35329717 + L1ME1 LINE L1 5684 6658 -6 775 207 64 10 chr9 106941833 106942036 -35329408 + L1 LINE L1 4334 4547 -1599 219 139 0 0 chr9 106942516 106942552 -35328892 + (TG)n Simple_repeat Simple_repeat 1 36 0 4565 170 7 6 chr9 106943044 106943914 -35327530 - L1 LINE L1 -816 5330 4460 195 305 109 16 chr9 106944655 106944783 -35326661 - MIR3 SINE MIR -6 202 63 23 33 0 0 chr9 106945105 106945135 -35326309 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr9 106945178 106945202 -35326242 + AT_rich Low_complexity Low_complexity 1 24 0 300 212 0 0 chr9 106945424 106945490 -35325954 + (TA)n Simple_repeat Simple_repeat 2 67 0 187 424 10 0 chr9 106946201 106946300 -35325144 - L2 LINE L2 -666 2648 2549 334 265 133 24 chr9 106946706 106946872 -35324572 + MIR SINE MIR 73 256 -6 2716 109 0 3 chr9 106947278 106947654 -35323790 + THE1C LTR MaLR 1 375 0 219 289 99 25 chr9 106948492 106948613 -35322831 + MIR SINE MIR 124 253 -9 225 385 115 28 chr9 106949767 106950157 -35321287 - L2 LINE L2 -31 3241 2818 484 330 55 11 chr9 106950361 106950634 -35320810 - L1M4 LINE L1 -2385 3761 3477 1498 137 27 81 chr9 106950648 106951013 -35320431 - MER4A LTR ERV1 0 664 261 562 59 165 12 chr9 106951013 106951098 -35320346 - MER4A LTR ERV1 -566 98 1 16180 104 54 23 chr9 106951106 106953783 -35317661 - MER4A-int LTR ERV1 -2 6596 3837 3803 130 75 50 chr9 106953782 106954704 -35316740 - MER4A-int LTR ERV1 -2917 3681 2737 * 1228 159 94 0 chr9 106954704 106954937 -35316507 + LTR8 LTR ERV1 1 255 -436 5207 126 155 25 chr9 106954938 106955331 -35316113 - MER4A-int LTR ERV1 -4102 2496 2155 243 0 0 0 chr9 106955331 106955358 -35316086 + (CA)n Simple_repeat Simple_repeat 2 28 0 5207 126 155 25 chr9 106955358 106956204 -35315240 - MER4A-int LTR ERV1 -4443 2155 189 1195 233 54 7 chr9 106956255 106956551 -35314893 - MER4A-int LTR ERV1 -4170 2161 1852 276 136 11 91 chr9 106956596 106956684 -35314760 - MER4A-int LTR ERV1 -5767 831 751 2527 93 190 51 chr9 106956756 106957250 -35314194 - MER4A-int LTR ERV1 -6035 563 1 1767 124 5 77 chr9 106957253 106957625 -35313819 - MER4A LTR ERV1 0 664 261 642 102 10 10 chr9 106957625 106957723 -35313721 - MER4A LTR ERV1 -566 98 1 449 290 123 63 chr9 106957783 106958100 -35313344 - L2 LINE L2 -560 2754 2419 2457 78 0 0 chr9 106958330 106958623 -35312821 - AluSc SINE Alu -13 296 4 1503 154 19 28 chr9 106958734 106959052 -35312392 + L1MB2 LINE L1 5857 6171 0 209 189 0 0 chr9 106961714 106961751 -35309693 + A-rich Low_complexity Low_complexity 3 39 0 335 208 111 0 chr9 106963442 106963514 -35307930 - L2 LINE L2 -1 3271 3192 1976 213 67 67 chr9 106963655 106964144 -35307300 - Charlie7 DNA MER1_type -84 2528 2037 361 179 0 0 chr9 106964144 106964222 -35307222 - L1MA7 LINE L1 -5 6286 6209 1976 213 67 67 chr9 106964222 106964647 -35306797 - Charlie7 DNA MER1_type -574 2038 1614 530 239 101 48 chr9 106964844 106965024 -35306420 - Charlie7 DNA MER1_type -2328 284 90 2248 103 13 0 chr9 106965024 106965324 -35306120 - AluSg SINE Alu -6 304 1 530 239 101 48 chr9 106965324 106965352 -35306092 - Charlie7 DNA MER1_type -2522 90 65 247 299 0 0 chr9 106966459 106966526 -35304918 - MER117 DNA MER1_type -1 196 130 33 25 0 0 chr9 106966792 106966832 -35304612 + AT_rich Low_complexity Low_complexity 1 40 0 507 253 191 6 chr9 106968433 106968611 -35302833 + MIR SINE MIR 40 250 -12 783 89 0 8 chr9 106969991 106970115 -35301329 - L1P LINE L1 -3266 2880 2758 200 231 179 26 chr9 106970132 106970210 -35301234 - MIR SINE MIR -155 107 18 307 290 0 20 chr9 106970258 106970358 -35301086 + L1M4 LINE L1 5114 5211 -935 274 226 36 0 chr9 106970393 106970477 -35300967 + L1MC5 LINE L1 7333 7419 -542 273 237 144 25 chr9 106970684 106970802 -35300642 + LTR16B LTR ERVL 333 464 0 244 375 31 0 chr9 106971151 106971247 -35300197 + L2 LINE L2 3174 3272 0 1952 156 60 28 chr9 106974452 106974979 -35296465 + MLT2A2 LTR ERVL 1 554 0 213 340 74 19 chr9 106975707 106975869 -35295575 - MIR SINE MIR -1 261 91 872 253 135 90 chr9 106976012 106976851 -35294593 - L2 LINE L2 -4 3309 2427 240 337 45 40 chr9 106976980 106977179 -35294265 + L2 LINE L2 2334 2533 -781 3109 152 71 16 chr9 106978343 106978990 -35292454 - MER67C LTR ERV1 -6 704 22 190 254 51 17 chr9 106979259 106979318 -35292126 + MIR SINE MIR 83 143 -119 447 237 53 35 chr9 106979328 106979497 -35291947 - MER104 DNA Tc2 -5 175 4 243 336 55 0 chr9 106979501 106979611 -35291833 + MIR SINE MIR 147 262 0 355 304 54 86 chr9 106979779 106980282 -35291162 - L1M4 LINE L1 -2828 3318 2832 526 258 16 16 chr9 106980609 106980803 -35290641 - L1ME2 LINE L1 -10 6154 5961 361 309 91 19 chr9 106981517 106981727 -35289717 - MLT1L LTR MaLR -82 533 309 46 68 0 0 chr9 106982311 106982399 -35289045 + AT_rich Low_complexity Low_complexity 1 88 0 539 200 12 2 chr9 106982498 106982644 -35288800 - L1ME2 LINE L1 -2 6160 6013 210 37 0 0 chr9 106982790 106982817 -35288627 + (CA)n Simple_repeat Simple_repeat 2 28 0 2198 135 3 0 chr9 106982877 106983181 -35288263 + AluSx SINE Alu 1 305 -7 259 278 56 0 chr9 106983310 106983400 -35288044 - L1ME2 LINE L1 -456 5706 5612 23 0 0 0 chr9 106985705 106985728 -35285716 + AT_rich Low_complexity Low_complexity 1 23 0 379 370 83 16 chr9 106986637 106987010 -35284434 + L2 LINE L2 2454 2851 -463 530 320 21 21 chr9 106987211 106987405 -35284039 - MIR SINE MIR -48 214 21 304 353 25 8 chr9 106987472 106987591 -35283853 + L2 LINE L2 3134 3254 -18 282 112 0 0 chr9 106987811 106987862 -35283582 - MIR SINE MIR -85 123 72 277 352 70 28 chr9 106988000 106988142 -35283302 + L2 LINE L2 3124 3271 -1 322 188 77 9 chr9 106988440 106988530 -35282914 + MIR SINE MIR 31 123 -85 2019 173 0 3 chr9 106988660 106988973 -35282471 - AluSx SINE Alu 0 312 1 251 280 43 11 chr9 106988974 106989067 -35282377 + MIR SINE MIR 45 140 -68 1313 276 124 1 chr9 106989216 106989782 -35281662 - L2 LINE L2 -2 3311 2667 380 312 75 25 chr9 106989943 106990241 -35281203 - L2 LINE L2 -256 3016 2699 192 362 86 7 chr9 106990341 106990493 -35280951 + L2 LINE L2 2478 2641 -673 2377 77 3 0 chr9 106990553 106990853 -35280591 - AluY SINE Alu -10 301 1 416 258 40 0 chr9 106990874 106990998 -35280446 - MER94 DNA DNA -4 130 2 317 204 0 19 chr9 106991362 106991465 -35279979 + GA-rich Low_complexity Low_complexity 2 102 0 408 304 93 49 chr9 106992023 106992516 -35278928 + LTR33 LTR ERVL 1 515 -6 2188 99 3 3 chr9 106992889 106993182 -35278262 + AluSq SINE Alu 1 293 -20 1896 171 5 76 chr9 106993226 106993646 -35277798 + MLT1B LTR MaLR 1 390 0 2373 138 26 30 chr9 106994006 106994433 -35277011 - MSTA LTR MaLR -3 425 1 1460 208 40 78 chr9 106994960 106995485 -35275959 + MLT1D LTR MaLR 1 505 0 602 237 60 52 chr9 106995551 106995800 -35275644 + LTR33 LTR ERVL 269 519 -2 1152 245 33 19 chr9 106996388 106996751 -35274693 + L1M4 LINE L1 3750 4117 -2029 1742 137 63 20 chr9 106996985 106997284 -35274160 + AluSx SINE Alu 1 312 0 2371 103 7 0 chr9 106997729 106998039 -35273405 + AluSq SINE Alu 1 312 -1 2261 106 0 3 chr9 106998503 106998796 -35272648 - AluSx SINE Alu -20 292 1 1329 158 32 16 chr9 107000572 107000877 -35270567 + MER61B LTR ERV1 1 396 -28 4307 102 28 158 chr9 107001146 107002704 -35268740 - pTR5 LTR ERV1 0 2606 1524 842 144 22 0 chr9 107003216 107003355 -35268089 - LTR12 LTR ERV1 -234 480 339 280 197 0 0 chr9 107003355 107003416 -35268028 - LTR30 LTR ERV1 -118 604 544 676 136 46 117 chr9 107003416 107003643 -35267801 - LTR12 LTR ERV1 -437 277 1 605 293 146 0 chr9 107003651 107003856 -35267588 - MIR SINE MIR -25 237 3 2073 155 82 15 chr9 107004020 107004421 -35267023 + MSTA LTR MaLR 1 428 0 39 22 0 0 chr9 107004426 107004472 -35266972 + AT_rich Low_complexity Low_complexity 1 46 0 392 272 17 81 chr9 107005297 107005470 -35265974 + MIR SINE MIR 86 247 -15 425 313 3 5 chr9 107005530 107005668 -35265776 - MER5B DNA MER1_type -13 173 40 204 40 0 0 chr9 107005780 107005805 -35265639 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 225 94 0 0 chr9 107005896 107005928 -35265516 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 280 346 39 0 chr9 107006065 107006169 -35265275 + MIR SINE MIR 39 146 -62 334 299 65 9 chr9 107006402 107006509 -35264935 + L2 LINE L2 3160 3272 0 220 179 105 126 chr9 107007286 107007321 -35264123 - MER5A DNA MER1_type -88 101 67 2308 100 0 0 chr9 107007321 107007611 -35263833 - AluSc SINE Alu -19 290 1 220 179 105 126 chr9 107007611 107007670 -35263774 - MER5A DNA MER1_type -122 67 9 2017 113 17 14 chr9 107007741 107008070 -35263374 - AluSx SINE Alu 0 312 1 28 61 0 0 chr9 107008548 107008597 -35262847 + AT_rich Low_complexity Low_complexity 1 49 0 525 221 90 8 chr9 107009583 107009705 -35261739 - MER5B DNA MER1_type 0 178 47 253 296 119 41 chr9 107009859 107009893 -35261551 + L1ME LINE L1 584 614 -6020 1915 103 103 35 chr9 107009893 107010234 -35261210 + THE1B LTR MaLR 1 364 0 11155 100 22 3 chr9 107010234 107011785 -35259659 + THE1B-int LTR MaLR 1 1580 0 1864 132 48 67 chr9 107011785 107012156 -35259288 + THE1B LTR MaLR 1 364 0 253 296 119 41 chr9 107012156 107012481 -35258963 + L1ME LINE L1 613 973 -5661 789 264 110 21 chr9 107012762 107013417 -35258027 + L1ME LINE L1 1014 1667 -4875 2169 83 6 19 chr9 107013495 107013809 -35257635 - AluY SINE Alu -1 310 1 255 307 10 40 chr9 107013829 107013930 -35257514 + L2 LINE L2 2365 2462 -852 1944 219 16 48 chr9 107013935 107014452 -35256992 - MLT1D LTR MaLR -5 500 1 337 294 46 9 chr9 107014490 107014599 -35256845 + L2 LINE L2 2499 2611 -703 193 322 78 26 chr9 107014605 107014720 -35256724 + L2 LINE L2 2948 3068 -245 293 272 57 83 chr9 107014794 107014917 -35256527 - LTR33A LTR ERVL -4 519 403 2290 107 0 7 chr9 107014917 107015227 -35256217 + AluSx SINE Alu 1 308 -4 293 272 57 83 chr9 107015227 107015331 -35256113 - LTR33A LTR ERVL -120 403 298 336 379 35 12 chr9 107016120 107016289 -35255155 + MIR SINE MIR 21 193 -69 7285 37 29 0 chr9 107017165 107018037 -35253407 - MER11D LTR ERVK 0 897 1 2846 121 11 26 chr9 107018052 107018404 -35253040 - L1M2 LINE L1 -598 5714 5367 2211 120 0 0 chr9 107018404 107018713 -35252731 - AluSg1 SINE Alu 0 309 1 2846 121 11 26 chr9 107018713 107018978 -35252466 - L1M2 LINE L1 -945 5367 5100 2781 130 13 103 chr9 107018978 107019587 -35251857 + L1MA7 LINE L1 5726 6284 -7 969 234 30 30 chr9 107020589 107020868 -35250576 - L1MDa LINE L1 -2820 3720 3439 2006 95 9 80 chr9 107020868 107021193 -35250251 - AluSq SINE Alu -11 302 1 969 234 30 30 chr9 107021193 107021277 -35250167 - L1MDa LINE L1 -3100 3440 3357 * 4765 166 24 10 chr9 107021272 107022157 -35249287 - L1MB3 LINE L1 -2 6181 5285 4632 198 96 44 chr9 107022159 107024133 -35247311 - L1MDa LINE L1 -3171 3369 1286 833 123 92 6 chr9 107024133 107024296 -35247148 - L1MA7 LINE L1 -5 6286 6110 4632 198 96 44 chr9 107024296 107024379 -35247065 - L1MDa LINE L1 -5254 1286 1209 22 35 0 0 chr9 107025602 107025631 -35245813 + AT_rich Low_complexity Low_complexity 1 29 0 1596 196 25 49 chr9 107025679 107026046 -35245398 - MLT1A2 LTR MaLR -16 358 1 29 60 0 0 chr9 107026087 107026137 -35245307 + AT_rich Low_complexity Low_complexity 1 50 0 2190 86 4 0 chr9 107028969 107029247 -35242197 - AluY SINE Alu -7 304 26 415 325 13 25 chr9 107029308 107029465 -35241979 + MER5A DNA MER1_type 35 189 0 637 228 60 0 chr9 107030715 107030882 -35240562 + L1M4 LINE L1 4783 4959 -1187 209 268 28 14 chr9 107031120 107031191 -35240253 + MIR SINE MIR 92 163 -99 544 238 87 52 chr9 107032651 107032864 -35238580 + L1MCa LINE L1 988 1213 -5213 1762 149 14 0 chr9 107032864 107033140 -35238304 + AluSx SINE Alu 10 289 -23 544 238 87 52 chr9 107033140 107033178 -35238266 + L1MCa LINE L1 1213 1248 -5178 2547 153 26 0 chr9 107034229 107034646 -35236798 - MSTA LTR MaLR 0 428 1 28 0 0 0 chr9 107035959 107035987 -35235457 + AT_rich Low_complexity Low_complexity 1 28 0 489 318 63 18 chr9 107036036 107036259 -35235185 + MIR SINE MIR 20 252 -10 1954 111 49 10 chr9 107036500 107036788 -35234656 - AluSq SINE Alu -14 299 1 376 265 257 0 chr9 107037065 107037201 -35234243 + MER5A DNA MER1_type 13 183 -6 772 217 11 44 chr9 107037208 107037388 -35234056 - MER5B DNA MER1_type 0 178 5 263 139 0 0 chr9 107037530 107037573 -35233871 + L1MD1 LINE L1 6172 6214 -28 328 219 94 39 chr9 107038212 107038340 -35233104 - L1MC/D LINE L1 -2332 5476 5342 2119 100 4 0 chr9 107039421 107039722 -35231722 + AluSx SINE Alu 1 302 0 30 97 0 0 chr9 107039728 107039821 -35231623 + AT_rich Low_complexity Low_complexity 1 93 0 850 143 0 0 chr9 107039969 107040095 -35231349 + AluJb SINE Alu 174 299 -13 239 111 0 22 chr9 107040965 107041010 -35230434 + (TTCTCC)n Simple_repeat Simple_repeat 3 46 0 197 257 0 0 chr9 107041246 107041281 -35230163 + L2 LINE L2 3189 3223 -90 2107 122 0 3 chr9 107041326 107041612 -35229832 + AluSx SINE Alu 2 286 -26 22 0 0 0 chr9 107042259 107042281 -35229163 + AT_rich Low_complexity Low_complexity 1 22 0 25 95 0 0 chr9 107042349 107042423 -35229021 + AT_rich Low_complexity Low_complexity 1 74 0 224 390 47 35 chr9 107042434 107042606 -35228838 + L2 LINE L2 2910 3083 -189 189 293 155 0 chr9 107043067 107043125 -35228319 + MER5A DNA MER1_type 120 186 -3 2511 72 3 0 chr9 107043771 107044076 -35227368 + AluSp SINE Alu 1 306 -7 390 369 97 5 chr9 107044747 107044942 -35226502 - MIR SINE MIR -40 222 10 277 257 29 0 chr9 107045967 107046037 -35225407 - MIR SINE MIR -116 146 75 283 371 69 19 chr9 107047627 107047786 -35223658 - L2 LINE L2 -181 3091 2925 189 337 101 47 chr9 107048256 107048425 -35223019 - MER5A DNA MER1_type -10 179 2 304 321 28 60 chr9 107048739 107048957 -35222487 + L2 LINE L2 2873 3083 -189 412 349 110 9 chr9 107049443 107049661 -35221783 + MIR SINE MIR 20 259 -3 647 86 75 0 chr9 107049970 107050063 -35221381 + MSTB LTR MaLR 1 100 -326 1720 118 0 8 chr9 107050064 107050309 -35221135 - AluSq SINE Alu -70 243 1 1404 107 0 5 chr9 107051892 107052106 -35219338 + AluSg/x SINE Alu 96 308 0 21 36 0 0 chr9 107052268 107052296 -35219148 + AT_rich Low_complexity Low_complexity 1 28 0 34 18 0 36 chr9 107052612 107052642 -35218802 + AT_rich Low_complexity Low_complexity 1 30 -24 10033 77 9 27 chr9 107052642 107054031 -35217413 - SVA Other Other -5 1381 17 34 18 0 36 chr9 107054031 107054056 -35217388 + AT_rich Low_complexity Low_complexity 30 54 0 258 160 0 0 chr9 107055420 107055470 -35215974 + GA-rich Low_complexity Low_complexity 3 52 0 2709 147 29 4 chr9 107055661 107056117 -35215327 + MLT1C LTR MaLR 1 467 0 521 107 50 0 chr9 107056349 107056489 -35214955 + (TA)n Simple_repeat Simple_repeat 1 147 0 1337 89 0 0 chr9 107056492 107056660 -35214784 + AluSp SINE Alu 123 290 -23 438 193 0 0 chr9 107056660 107056826 -35214618 + (TA)n Simple_repeat Simple_repeat 1 166 0 222 191 32 0 chr9 107056827 107056890 -35214554 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 517 179 0 11 chr9 107057010 107057189 -35214255 + (TA)n Simple_repeat Simple_repeat 2 178 0 231 211 0 0 chr9 107057206 107057301 -35214143 + (TA)n Simple_repeat Simple_repeat 2 96 0 267 268 0 0 chr9 107057317 107057569 -35213875 + (TA)n Simple_repeat Simple_repeat 1 252 0 2113 84 11 7 chr9 107057579 107057866 -35213578 - AluSq SINE Alu -23 290 3 24 53 0 0 chr9 107058086 107058124 -35213320 + AT_rich Low_complexity Low_complexity 1 38 0 249 122 0 0 chr9 107058313 107058354 -35213090 - L1MA9 LINE L1 -4 6308 6268 1643 133 9 0 chr9 107058594 107058827 -35212617 + AluSg/x SINE Alu 69 303 -7 1665 196 9 90 chr9 107059641 107059749 -35211695 + MLT1B LTR MaLR 1 116 -274 675 208 0 15 chr9 107059749 107059871 -35211573 + AluJo/FLAM SINE Alu 1 122 -180 2458 30 7 30 chr9 107059871 107060175 -35211269 - AluY SINE Alu -14 297 1 1665 196 9 90 chr9 107060182 107060497 -35210947 + MLT1B LTR MaLR 116 390 0 2551 46 3 7 chr9 107061193 107061500 -35209944 + AluY SINE Alu 1 306 -5 254 371 88 56 chr9 107061615 107062011 -35209433 + L2 LINE L2 2844 3252 -20 210 365 40 0 chr9 107063004 107063130 -35208314 - MIR3 SINE MIR 0 208 78 2050 257 48 24 chr9 107063142 107063525 -35207919 + L1M4 LINE L1 4044 4416 -1730 2255 103 7 0 chr9 107063525 107063825 -35207619 - AluSx SINE Alu -9 303 2 2050 257 48 24 chr9 107063825 107064238 -35207206 + L1M4 LINE L1 4416 4859 -1287 3974 67 0 6 chr9 107064247 107064767 -35206677 - L1PA8 LINE L1 0 6172 5656 2358 75 3 23 chr9 107064947 107065253 -35206191 - AluSc SINE Alu -9 300 1 433 315 73 6 chr9 107065600 107065778 -35205666 - MIR SINE MIR -8 254 65 228 67 0 0 chr9 107068884 107068914 -35202530 + (CA)n Simple_repeat Simple_repeat 2 31 0 2327 71 3 0 chr9 107069032 107069338 -35202106 - AluY SINE Alu 0 307 1 429 176 0 0 chr9 107070818 107070903 -35200541 - L1MA7 LINE L1 -2 6289 6205 9202 216 11 5 chr9 107070914 107073814 -35197630 - L1PA16 LINE L1 0 6166 3246 1920 73 0 42 chr9 107074767 107075026 -35196418 + AluY SINE Alu 49 296 -15 2302 92 17 0 chr9 107075081 107075374 -35196070 + AluSg SINE Alu 1 298 -12 211 329 26 26 chr9 107075526 107075602 -35195842 - MIR SINE MIR -64 144 69 447 242 72 125 chr9 107076154 107076418 -35195026 - MIR SINE MIR -10 252 3 2205 128 9 105 chr9 107076645 107077092 -35194352 + Tigger2a DNA MER2_type 2 405 -29 33 73 0 0 chr9 107077236 107077304 -35194140 + AT_rich Low_complexity Low_complexity 1 68 0 327 348 9 43 chr9 107077415 107077625 -35193819 + L2 LINE L2 3106 3308 -5 5280 117 40 5 chr9 107077863 107078979 -35192465 + L1PA16 LINE L1 5002 6157 -9 318 345 93 20 chr9 107078980 107079325 -35192119 + L1M4 LINE L1 3968 4337 -1809 25 0 0 0 chr9 107079537 107079562 -35191882 + AT_rich Low_complexity Low_complexity 1 25 0 207 100 0 0 chr9 107080091 107080121 -35191323 + (A)n Simple_repeat Simple_repeat 1 30 0 267 104 0 0 chr9 107080526 107080574 -35190870 + (TA)n Simple_repeat Simple_repeat 2 49 0 318 227 45 11 chr9 107080574 107080662 -35190782 - L1MC4 LINE L1 -1338 6704 6614 407 318 78 16 chr9 107081078 107081399 -35190045 + HAL1b LINE L1 259 599 -749 615 314 87 42 chr9 107081591 107082097 -35189347 + L1MEc LINE L1 37 565 -5831 524 231 14 34 chr9 107082189 107082336 -35189108 - LTR19C LTR ERV1 0 779 636 252 77 0 0 chr9 107082350 107082389 -35189055 + (GA)n Simple_repeat Simple_repeat 1 39 0 1664 190 53 12 chr9 107082403 107082745 -35188699 - MLT2D LTR ERVL -58 356 1 1000 225 41 59 chr9 107082745 107083065 -35188379 + L1MD2 LINE L1 6034 6347 -12 9624 103 15 6 chr9 107083099 107084454 -35186990 + L1P3 LINE L1 10 1376 -5085 342 272 0 0 chr9 107084454 107084535 -35186909 - MER58 DNA MER1_type -234 107 27 846 199 51 74 chr9 107084558 107084869 -35186575 + L1MC4 LINE L1 7738 8041 -1 24 53 0 0 chr9 107084976 107085014 -35186430 + AT_rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr9 107085032 107085054 -35186390 + (CA)n Simple_repeat Simple_repeat 2 23 0 21 36 0 0 chr9 107085166 107085194 -35186250 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr9 107085391 107085423 -35186021 + AT_rich Low_complexity Low_complexity 1 32 0 233 333 30 10 chr9 107086863 107086962 -35184482 - MIR SINE MIR -68 194 94 250 179 60 0 chr9 107087303 107087370 -35184074 - L1MA7 LINE L1 0 6291 6221 892 129 7 7 chr9 107087370 107087509 -35183935 - THE1B LTR MaLR 0 364 226 317 50 0 0 chr9 107087506 107087546 -35183898 - THE1B LTR MaLR -324 40 1 * 10486 102 50 3 chr9 107087546 107089055 -35182389 - THE1B-int LTR MaLR 0 1580 1 2203 145 20 8 chr9 107089057 107089415 -35182029 - THE1B LTR MaLR -2 362 1 338 320 177 0 chr9 107091444 107091591 -35179853 - MER5A DNA MER1_type -6 183 11 223 343 14 0 chr9 107093687 107093760 -35177684 + L2 LINE L2 3211 3284 -29 193 282 19 58 chr9 107094065 107094168 -35177276 + MIR SINE MIR 114 212 -50 242 269 98 31 chr9 107095347 107095497 -35175947 - MIR3 SINE MIR -10 198 41 1222 180 0 36 chr9 107097254 107097476 -35173968 - AluJo SINE Alu -21 291 78 336 226 85 43 chr9 107097746 107097910 -35173534 + L1MC5 LINE L1 7737 7907 -54 249 292 0 0 chr9 107097951 107098023 -35173421 + (TA)n Simple_repeat Simple_repeat 1 72 0 37 76 0 0 chr9 107098299 107098378 -35173066 + AT_rich Low_complexity Low_complexity 1 79 0 201 358 12 0 chr9 107098583 107098664 -35172780 - MIR SINE MIR -105 157 76 610 110 0 2 chr9 107100976 107101221 -35170223 - AluSc SINE Alu -14 295 2 343 257 79 0 chr9 107101242 107101343 -35170101 - MER5A DNA MER1_type -72 117 9 501 173 5 49 chr9 107102512 107102697 -35168747 + GA-rich Low_complexity Low_complexity 4 180 0 183 316 18 0 chr9 107102708 107102765 -35168679 - L2 LINE L2 -1 3271 3214 189 324 44 0 chr9 107103155 107103223 -35168221 + L2 LINE L2 3169 3239 -33 203 213 64 0 chr9 107103543 107103590 -35167854 + MIR SINE MIR 117 166 -96 282 353 25 8 chr9 107104771 107104890 -35166554 - MIR3 SINE MIR -6 202 82 431 82 0 0 chr9 107104940 107105001 -35166443 + L1MD3 LINE L1 7919 7979 -16 21 36 0 0 chr9 107105002 107105030 -35166414 + AT_rich Low_complexity Low_complexity 1 28 0 226 319 97 18 chr9 107105051 107105164 -35166280 - MIR3 SINE MIR -2 206 85 738 146 8 0 chr9 107105224 107105354 -35166090 + L1MA5A LINE L1 6155 6285 -12 1990 144 13 0 chr9 107105354 107105652 -35165792 - AluSx SINE Alu -10 302 1 198 0 0 0 chr9 107105655 107105677 -35165767 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2217 112 3 6 chr9 107105760 107106072 -35165372 + AluSq SINE Alu 1 311 -2 453 182 168 50 chr9 107106101 107106321 -35165123 + Charlie2 DNA MER1_type 2244 2489 -373 24 0 0 0 chr9 107106367 107106391 -35165053 + AT_rich Low_complexity Low_complexity 1 24 0 182 318 32 0 chr9 107106432 107106495 -35164949 - L2 LINE L2 -10 3262 3198 23 0 0 0 chr9 107106635 107106658 -35164786 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 107106753 107106779 -35164665 + AT_rich Low_complexity Low_complexity 1 26 0 1937 135 20 7 chr9 107107696 107107992 -35163452 + AluSx SINE Alu 1 300 -12 1661 187 133 0 chr9 107108659 107109119 -35162325 - L1 LINE L1 -2500 3646 3126 6358 172 53 49 chr9 107109119 107109904 -35161540 + L1MA9 LINE L1 3682 4462 -1850 513 95 0 0 chr9 107109904 107109978 -35161466 - MADE1 DNA Mariner -6 74 1 6358 172 53 49 chr9 107109978 107110655 -35160789 + L1MA9 LINE L1 4462 5134 -1178 2214 176 34 2 chr9 107110655 107111070 -35160374 - MSTC LTR MaLR 0 428 1 6358 172 53 49 chr9 107111070 107112085 -35159359 + L1MA9 LINE L1 5134 6250 -62 1438 176 120 71 chr9 107112085 107112493 -35158951 + MSTA LTR MaLR 1 428 0 6358 172 53 49 chr9 107112493 107112551 -35158893 + L1MA9 LINE L1 6250 6306 -6 1480 214 47 62 chr9 107112583 107112985 -35158459 + MSTD LTR MaLR 1 396 0 252 309 92 13 chr9 107113468 107113620 -35157824 + MER4B-int LTR ERV1 4605 4768 -1990 1972 207 30 22 chr9 107115537 107116000 -35155444 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr9 107116870 107116891 -35154553 + AT_rich Low_complexity Low_complexity 1 21 0 292 202 0 53 chr9 107117381 107117475 -35153969 + L1MA4A LINE L1 2399 2487 -3659 4814 189 39 16 chr9 107117502 107119531 -35151913 + L1MA4A LINE L1 3922 6015 -288 * 5570 139 15 13 chr9 107119506 107120706 -35150738 + L1PB1 LINE L1 1 1398 -5465 2183 85 31 0 chr9 107120707 107121000 -35150444 + PABL_A LTR ERV1 2 303 -357 531 121 110 0 chr9 107121002 107121093 -35150351 + L1PB1 LINE L1 2871 2971 -3892 333 172 0 0 chr9 107121105 107121163 -35150281 - L1 LINE L1 -3123 3023 2966 * 6021 158 31 57 chr9 107121151 107121578 -35149866 + L1PB1 LINE L1 4523 4960 -1907 3197 66 5 7 chr9 107121578 107122000 -35149444 + L1PA8 LINE L1 5748 6170 -2 6021 158 31 57 chr9 107122000 107122046 -35149398 + L1PB1 LINE L1 4960 5006 -1861 2127 113 0 3 chr9 107122046 107122356 -35149088 + AluSq SINE Alu 1 309 0 6021 158 31 57 chr9 107122356 107123487 -35147957 + L1PB1 LINE L1 5006 6065 -802 2176 121 3 0 chr9 107123487 107123784 -35147660 + AluSx SINE Alu 3 300 -12 6021 158 31 57 chr9 107123784 107124567 -35146877 + L1PB1 LINE L1 6065 6867 0 1829 130 11 66 chr9 107124601 107124680 -35146764 + L1MA4A LINE L1 5956 6038 -265 2186 120 0 0 chr9 107124680 107124971 -35146473 + AluSg1 SINE Alu 1 291 -18 1829 130 11 66 chr9 107124971 107125253 -35146191 + L1MA4A LINE L1 6038 6297 -6 26 0 0 0 chr9 107125256 107125282 -35146162 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 107125367 107125395 -35146049 + AT_rich Low_complexity Low_complexity 1 28 0 231 356 82 0 chr9 107125568 107125703 -35145741 + MIR SINE MIR 66 211 -51 32 43 0 0 chr9 107127988 107128034 -35143410 + AT_rich Low_complexity Low_complexity 1 46 0 234 91 0 0 chr9 107129232 107129265 -35142179 + (T)n Simple_repeat Simple_repeat 1 33 0 315 293 50 64 chr9 107129370 107129653 -35141791 - L1 LINE L1 -1479 4667 4389 270 352 0 0 chr9 107129778 107129869 -35141575 - L1 LINE L1 -1989 4157 4067 2264 99 0 0 chr9 107129885 107130193 -35141251 + AluSx SINE Alu 1 308 0 229 274 21 0 chr9 107130312 107130407 -35141037 - L1 LINE L1 -2186 3960 3864 24 32 0 0 chr9 107130938 107130969 -35140475 + AT_rich Low_complexity Low_complexity 1 31 0 779 159 167 75 chr9 107131142 107131394 -35140050 + ORSL DNA AcHobo 1 275 0 310 258 81 124 chr9 107131526 107131707 -35139737 - Charlie8 DNA MER1_type -66 275 109 2335 60 3 13 chr9 107131707 107132009 -35139435 + AluY SINE Alu 1 299 -12 310 258 81 124 chr9 107132009 107132110 -35139334 - Charlie8 DNA MER1_type -232 109 5 2082 127 0 0 chr9 107133486 107133778 -35137666 + AluSx SINE Alu 1 292 -20 588 243 16 53 chr9 107134006 107134195 -35137249 + L2 LINE L2 3128 3309 -4 197 310 28 0 chr9 107134953 107135024 -35136420 + MIR SINE MIR 187 259 -3 736 253 123 38 chr9 107135115 107135376 -35136068 + LTR50 LTR ERVL 16 298 -497 30 27 0 0 chr9 107135679 107135716 -35135728 + AT_rich Low_complexity Low_complexity 1 37 0 1451 275 31 47 chr9 107135716 107136295 -35135149 + L1M4c LINE L1 1211 1780 -4604 1899 136 177 11 chr9 107137192 107137559 -35133885 + MSTA LTR MaLR 1 428 0 642 316 77 44 chr9 107138077 107138466 -35132978 + MLT1I LTR MaLR 1 402 -7 365 309 0 65 chr9 107138671 107138810 -35132634 + MER91B DNA MER1_type 1 130 -60 207 385 22 0 chr9 107138829 107138920 -35132524 + MER91B DNA MER1_type 97 189 -1 270 328 100 11 chr9 107138921 107139101 -35132343 + L1MEd LINE L1 564 759 -5360 23 78 0 0 chr9 107139127 107139178 -35132266 + AT_rich Low_complexity Low_complexity 1 51 0 510 271 62 4 chr9 107139223 107139467 -35131977 + L1MEd LINE L1 2230 2487 -3642 237 269 29 29 chr9 107139551 107139655 -35131789 + L1MEd LINE L1 2647 2750 -3379 222 274 0 0 chr9 107140193 107140244 -35131200 + GA-rich Low_complexity Low_complexity 4 54 0 342 287 52 29 chr9 107140860 107140996 -35130448 + MIR SINE MIR 1 139 -123 277 357 96 6 chr9 107141818 107141975 -35129469 - MIR SINE MIR -72 190 20 346 339 0 0 chr9 107144062 107144183 -35127261 - L2 LINE L2 -578 2736 2616 369 120 0 8 chr9 107144234 107144302 -35127142 - L1MA9 LINE L1 -61 6238 6167 847 142 64 0 chr9 107144372 107144513 -35126931 - AluJb SINE Alu -78 234 85 648 100 36 0 chr9 107144515 107144625 -35126819 - L1MA9 LINE L1 -257 6055 5942 588 335 85 0 chr9 107145319 107145531 -35125913 - MIR SINE MIR -15 247 18 237 33 0 0 chr9 107145774 107145804 -35125640 + (A)n Simple_repeat Simple_repeat 1 30 0 2194 91 0 14 chr9 107145809 107146096 -35125348 + AluSg SINE Alu 16 298 -12 242 157 20 0 chr9 107146167 107146218 -35125226 + (TA)n Simple_repeat Simple_repeat 1 52 0 407 331 84 6 chr9 107146228 107146406 -35125038 + L3 LINE CR1 1374 1565 -12 430 300 21 11 chr9 107146559 107146749 -35124695 + L1ME4a LINE L1 5705 5896 -225 269 303 34 0 chr9 107146828 107146917 -35124527 + L2 LINE L2 3179 3270 -2 328 322 89 40 chr9 107147444 107147646 -35123798 + L1ME LINE L1 5608 5819 -302 27 0 0 0 chr9 107148565 107148592 -35122852 + AT_rich Low_complexity Low_complexity 1 27 0 407 91 0 0 chr9 107149323 107149378 -35122066 - L1P3 LINE L1 -6394 67 13 189 0 0 0 chr9 107149406 107149427 -35122017 + (A)n Simple_repeat Simple_repeat 1 21 0 294 255 89 58 chr9 107150409 107150668 -35120776 - L1ME4a LINE L1 -109 6012 5746 22 80 0 0 chr9 107150931 107150981 -35120463 + AT_rich Low_complexity Low_complexity 1 50 0 2012 144 7 0 chr9 107151435 107151733 -35119711 + AluSx SINE Alu 1 300 -12 428 253 207 7 chr9 107152382 107152532 -35118912 + MER5A DNA MER1_type 9 188 -1 249 282 0 51 chr9 107152544 107152622 -35118822 - MER5B DNA MER1_type -3 175 102 342 347 28 35 chr9 107152910 107153054 -35118390 + MER5A DNA MER1_type 4 146 -43 181 354 44 71 chr9 107154550 107154844 -35116600 + L2 LINE L2 2810 3095 -177 1585 153 0 8 chr9 107156084 107156325 -35115119 - AluJb SINE Alu -73 239 1 622 312 57 34 chr9 107156395 107157060 -35114384 - L1M3de LINE L1 -4598 1942 1307 278 235 148 27 chr9 107157085 107157234 -35114210 - L1MCc LINE L1 -4974 1449 1283 483 256 31 39 chr9 107158059 107158188 -35113256 + L2 LINE L2 3137 3264 -8 1333 261 86 29 chr9 107158207 107158659 -35112785 + MER74A LTR ERVL 11 488 -70 345 242 53 11 chr9 107158576 107158671 -35112773 - MER88 LTR ERVL -287 177 79 * 1627 201 41 0 chr9 107159895 107160214 -35111230 - MER7A DNA MER2_type -15 331 2 22 0 0 0 chr9 107160429 107160451 -35110993 + AT_rich Low_complexity Low_complexity 1 22 0 2024 163 18 5 chr9 107161109 107161496 -35109948 + L1 LINE L1 4428 4819 -1327 217 296 0 56 chr9 107162746 107162847 -35108597 + GA-rich Low_complexity Low_complexity 2 96 -23 225 0 0 0 chr9 107162847 107162872 -35108572 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 217 296 0 56 chr9 107162872 107162895 -35108549 + GA-rich Low_complexity Low_complexity 96 119 0 481 289 72 6 chr9 107162920 107163086 -35108358 - MIR SINE MIR -66 196 20 412 289 102 30 chr9 107163203 107163369 -35108075 + L2 LINE L2 3129 3306 -7 669 244 8 84 chr9 107163406 107163644 -35107800 - MIR SINE MIR -25 237 18 2162 119 0 0 chr9 107164392 107164744 -35106700 - AluSx SINE Alu 0 352 1 28 48 0 0 chr9 107165155 107165197 -35106247 + AT_rich Low_complexity Low_complexity 1 42 0 194 341 52 35 chr9 107165334 107165507 -35105937 + MIR SINE MIR 20 195 -67 214 119 0 68 chr9 107165926 107165985 -35105459 + (CA)n Simple_repeat Simple_repeat 2 56 0 278 306 7 28 chr9 107168960 107169104 -35102340 + GA-rich Low_complexity Low_complexity 3 143 0 471 265 78 12 chr9 107169129 107169295 -35102149 - MIR SINE MIR -66 196 20 394 296 81 12 chr9 107169414 107169586 -35101858 + L2 LINE L2 3129 3312 -1 720 237 8 89 chr9 107169617 107169853 -35101591 - MIR SINE MIR -25 237 21 180 305 17 17 chr9 107169804 107169863 -35101581 + MIR SINE MIR 20 78 -184 * 447 261 85 12 chr9 107170957 107171122 -35100322 - MIR SINE MIR -66 196 20 394 296 81 12 chr9 107171241 107171413 -35100031 + L2 LINE L2 3129 3312 -1 720 237 8 89 chr9 107171444 107171680 -35099764 - MIR SINE MIR -25 237 21 180 305 17 17 chr9 107171631 107171690 -35099754 + MIR SINE MIR 20 78 -184 * 25 0 0 68 chr9 107172398 107172442 -35099002 + AT_rich Low_complexity Low_complexity 1 41 0 1914 151 13 0 chr9 107172442 107172741 -35098703 - AluSx SINE Alu -9 303 1 28 0 0 0 chr9 107172899 107172927 -35098517 + AT_rich Low_complexity Low_complexity 1 28 0 580 296 48 39 chr9 107173033 107173454 -35097990 - L1MEc LINE L1 -3676 2539 2161 22 94 0 0 chr9 107174065 107174129 -35097315 + AT_rich Low_complexity Low_complexity 1 64 0 636 271 120 28 chr9 107174285 107174610 -35096834 + L1MC4a LINE L1 5578 5932 -1876 183 205 0 0 chr9 107174611 107174650 -35096794 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr9 107174800 107174821 -35096623 + AT_rich Low_complexity Low_complexity 1 21 0 183 255 0 0 chr9 107175170 107175221 -35096223 + MIR SINE MIR 212 262 0 460 269 124 36 chr9 107175609 107175802 -35095642 + MIR SINE MIR 10 219 -43 1002 48 0 0 chr9 107176206 107176330 -35095114 - L1PA5 LINE L1 -2 6152 6029 258 56 0 0 chr9 107177725 107177761 -35093683 + (TC)n Simple_repeat Simple_repeat 1 36 0 1673 160 7 3 chr9 107177859 107178146 -35093298 + MER47A DNA MER2_type 46 333 -33 354 287 29 7 chr9 107178201 107178337 -35093107 + GA-rich Low_complexity Low_complexity 4 142 0 32 43 0 0 chr9 107178553 107178599 -35092845 + AT_rich Low_complexity Low_complexity 1 46 0 401 326 34 50 chr9 107178710 107178949 -35092495 - L1MC/D LINE L1 -2305 5503 5269 203 407 12 0 chr9 107179103 107179184 -35092260 - L2 LINE L2 -85 3187 3106 466 162 0 0 chr9 107179226 107179294 -35092150 - LTR1 LTR ERV1 0 785 718 415 32 0 32 chr9 107179413 107179476 -35091968 + (CA)n Simple_repeat Simple_repeat 2 62 0 6991 56 7 0 chr9 107179841 107180732 -35090712 + L1PA6 LINE L1 5254 6150 -4 24 0 0 0 chr9 107183292 107183316 -35088128 + AT_rich Low_complexity Low_complexity 1 24 0 226 287 138 11 chr9 107183546 107183633 -35087811 - MIR SINE MIR -112 150 53 2251 233 104 24 chr9 107184018 107184688 -35086756 - L1ME1 LINE L1 -49 6117 5394 551 143 19 9 chr9 107184721 107184826 -35086618 - FLAM_A SINE Alu -15 127 22 432 191 119 0 chr9 107184891 107185017 -35086427 - L1ME1 LINE L1 -817 5329 5189 516 256 122 0 chr9 107185773 107185945 -35085499 + MIR SINE MIR 49 241 -21 6899 45 0 1 chr9 107187918 107188766 -35082678 + L1PA5 LINE L1 5308 6154 0 2698 68 11 0 chr9 107189147 107189498 -35081946 + THE1A LTR MaLR 1 355 0 11663 94 7 0 chr9 107189498 107191065 -35080379 + THE1A-int LTR MaLR 1 1578 -2 2471 93 26 0 chr9 107191069 107191413 -35080031 + THE1A LTR MaLR 3 355 0 2482 78 7 0 chr9 107192053 107192362 -35079082 - AluSq SINE Alu -2 311 1 380 284 142 14 chr9 107192362 107192573 -35078871 - L1ME4a LINE L1 -127 5994 5757 483 252 191 14 chr9 107193953 107194100 -35077344 + MER5A DNA MER1_type 15 187 -2 298 179 90 30 chr9 107194118 107194185 -35077259 - MER5B DNA MER1_type -5 173 103 223 286 75 60 chr9 107194464 107194597 -35076847 + MER5A DNA MER1_type 7 141 -48 2068 119 0 3 chr9 107195218 107195532 -35075912 + AluSq SINE Alu 1 313 0 184 350 131 6 chr9 107196513 107196696 -35074748 + L2 LINE L2 2844 3049 -223 2321 102 0 0 chr9 107196723 107197026 -35074418 + AluSc SINE Alu 1 303 -6 21 0 0 0 chr9 107197238 107197259 -35074185 + AT_rich Low_complexity Low_complexity 1 21 0 1756 175 7 0 chr9 107197371 107197668 -35073776 - AluJb SINE Alu -13 299 1 2579 49 0 0 chr9 107198222 107198530 -35072914 - AluY SINE Alu -3 308 1 2384 80 0 6 chr9 107198623 107198936 -35072508 - AluSx SINE Alu -1 311 1 422 300 0 6 chr9 107199112 107199272 -35072172 - MER52A LTR ERV1 0 1755 1597 1173 234 55 33 chr9 107199274 107199641 -35071803 - MER52A LTR ERV1 -285 1470 1096 2476 66 3 0 chr9 107199641 107199943 -35071501 + AluSq SINE Alu 1 303 -10 774 197 146 82 chr9 107199943 107200237 -35071207 - MER52A LTR ERV1 -542 94 2 228 321 62 0 chr9 107200308 107200389 -35071055 + L2 LINE L2 3168 3253 -19 28 0 0 0 chr9 107200447 107200475 -35070969 + AT_rich Low_complexity Low_complexity 1 28 0 205 346 68 49 chr9 107200488 107200650 -35070794 - MER5B DNA MER1_type -12 166 2 5529 215 30 125 chr9 107201056 107203764 -35067680 + L1MA4 LINE L1 399 2803 -4763 2867 0 0 0 chr9 107203764 107204070 -35067374 + AluYa5 SINE Alu 1 306 -5 5529 215 30 125 chr9 107204070 107204209 -35067235 + L1MA4 LINE L1 2803 2954 -4612 4653 185 56 1 chr9 107204220 107205191 -35066253 + L1MA4 LINE L1 5255 6278 -1287 3733 167 105 46 chr9 107205191 107205644 -35065800 + L1MA4 LINE L1 6752 7177 -542 10260 154 13 3 chr9 107205644 107206473 -35064971 + L1PA13 LINE L1 3312 4131 -2032 4426 74 60 80 chr9 107206473 107207175 -35064269 + LTR12 LTR ERV1 1 688 0 10260 154 13 3 chr9 107207175 107209211 -35062233 + L1PA13 LINE L1 4131 6161 -2 3733 167 105 46 chr9 107209211 107209420 -35062024 + L1MA4 LINE L1 7177 7372 -347 2069 121 28 0 chr9 107209420 107209709 -35061735 + AluSc SINE Alu 1 297 -12 3733 167 105 46 chr9 107209709 107209959 -35061485 + L1MA4 LINE L1 7372 7719 0 787 217 51 15 chr9 107209969 107210250 -35061194 + L1MA9 LINE L1 2913 3395 -4171 2078 120 0 49 chr9 107210278 107210392 -35061052 + AluSg SINE Alu 1 119 -191 2315 42 14 0 chr9 107210392 107210680 -35060764 - L1PA4 LINE L1 0 6155 5864 2078 120 0 49 chr9 107210680 107210889 -35060555 + AluSg SINE Alu 119 308 -2 2113 215 12 6 chr9 107210953 107211883 -35059561 + L1MA9 LINE L1 3293 4343 -3222 1170 191 5 0 chr9 107211890 107212089 -35059355 + AluJb SINE Alu 86 285 -27 225 164 0 60 chr9 107212092 107212159 -35059285 + L1MC4 LINE L1 6640 6702 -1340 * 266 122 0 0 chr9 107212138 107212187 -35059257 - L1MC4 LINE L1 -1341 6701 6653 453 248 0 0 chr9 107212195 107212324 -35059120 + (TA)n Simple_repeat Simple_repeat 1 129 0 195 69 0 0 chr9 107212357 107212386 -35059058 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 9125 198 40 36 chr9 107212400 107215739 -35055705 + L1MA9 LINE L1 4338 7683 -48 22 0 0 0 chr9 107215743 107215765 -35055679 + AT_rich Low_complexity Low_complexity 1 22 0 551 165 9 26 chr9 107216350 107216465 -35054979 + FLAM_C SINE Alu 30 142 -1 781 177 0 72 chr9 107216469 107216650 -35054794 + AluJo SINE Alu 120 287 -25 21 0 0 0 chr9 107216714 107216735 -35054709 + AT_rich Low_complexity Low_complexity 1 21 0 237 258 0 15 chr9 107217963 107218029 -35053415 + L1ME LINE L1 21 85 -5985 437 262 88 10 chr9 107218042 107218283 -35053161 + L1ME LINE L1 153 421 -5649 1283 205 114 10 chr9 107218328 107218635 -35052809 + MER2 DNA MER2_type 7 345 0 394 290 40 1 chr9 107218658 107218801 -35052643 + L1ME LINE L1 452 599 -5471 1300 270 88 38 chr9 107218803 107219300 -35052144 - LTR26 LTR ERV1 0 603 41 287 301 0 14 chr9 107220867 107220940 -35050504 + L2 LINE L2 3201 3272 0 25 0 0 0 chr9 107223064 107223089 -35048355 + AT_rich Low_complexity Low_complexity 1 25 0 2398 75 0 7 chr9 107224744 107225050 -35046394 - AluY SINE Alu -7 304 1 1764 177 7 3 chr9 107225678 107225966 -35045478 - AluJb SINE Alu -20 292 4 353 147 125 96 chr9 107225989 107226125 -35045319 - MER53 DNA DNA -49 140 1 1800 178 22 25 chr9 107226319 107226674 -35044770 - MLT1A1 LTR MaLR -1 364 11 206 208 19 19 chr9 107226911 107226964 -35044480 - L2 LINE L2 -1 3271 3219 1159 191 12 8 chr9 107227492 107227733 -35043711 - AluJb SINE Alu -1 311 70 26 0 0 0 chr9 107228327 107228353 -35043091 + AT_rich Low_complexity Low_complexity 1 26 0 10878 218 35 22 chr9 107228373 107228467 -35042977 + L1PA8 LINE L1 2769 2860 -3312 1905 129 24 11 chr9 107228467 107228754 -35042690 + AluSq SINE Alu 8 298 -15 10878 218 35 22 chr9 107228754 107232018 -35039426 + L1PA8 LINE L1 2860 6171 -1 279 45 0 0 chr9 107232085 107232129 -35039315 - AluY SINE Alu 0 300 257 2486 55 0 10 chr9 107232585 107232893 -35038551 - AluY SINE Alu -5 306 2 2218 76 3 7 chr9 107233244 107233535 -35037909 + AluSq SINE Alu 1 290 -23 352 362 129 33 chr9 107234289 107234499 -35036945 - L3 LINE CR1 -43 1534 1305 191 185 261 0 chr9 107234581 107234646 -35036798 - L2 LINE L2 0 3313 3232 278 274 21 21 chr9 107234957 107235052 -35036392 + L2 LINE L2 2174 2268 -1046 205 331 68 83 chr9 107235447 107235713 -35035731 + L2 LINE L2 2974 3235 -37 268 280 19 70 chr9 107235874 107236031 -35035413 + L2 LINE L2 2590 2738 -576 232 224 134 15 chr9 107236021 107236088 -35035356 + MIR SINE MIR 65 139 -123 * 940 272 92 26 chr9 107236131 107236912 -35034532 + L1ME LINE L1 4919 5764 -406 211 240 0 20 chr9 107237805 107237855 -35033589 + L2 LINE L2 3014 3062 -210 225 348 0 33 chr9 107238122 107238214 -35033230 + L2 LINE L2 2875 2963 -309 1545 146 3 108 chr9 107238589 107238723 -35032721 + AluJb SINE Alu 1 83 -229 2124 117 0 0 chr9 107238723 107239005 -35032439 + AluSc SINE Alu 1 282 -27 1545 146 3 108 chr9 107239005 107239193 -35032251 + AluJb SINE Alu 83 289 -23 1346 274 247 37 chr9 107239342 107239746 -35031698 + L2 LINE L2 2208 2526 -787 1971 109 0 14 chr9 107239746 107240062 -35031382 - AluSg SINE Alu 0 312 1 1346 274 247 37 chr9 107240062 107240488 -35030956 + L2 LINE L2 2526 2861 -452 2460 91 0 3 chr9 107240488 107240797 -35030647 - AluSc SINE Alu -1 308 1 1346 274 247 37 chr9 107240797 107240873 -35030571 + L2 LINE L2 2861 3311 -2 196 241 35 17 chr9 107241369 107241427 -35030017 + MIR SINE MIR 94 152 -110 2076 117 0 3 chr9 107241808 107242123 -35029321 + AluSx SINE Alu 1 314 0 213 39 0 0 chr9 107242146 107242172 -35029272 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 596 141 0 0 chr9 107243808 107243900 -35027544 + AluJb SINE Alu 212 303 -9 1194 162 28 9 chr9 107243906 107244122 -35027322 + L1MA3 LINE L1 16 235 -7330 10705 143 17 10 chr9 107244141 107247086 -35024358 + L1MA3 LINE L1 4755 7721 -3 23 68 0 0 chr9 107247086 107247130 -35024314 + AT_rich Low_complexity Low_complexity 1 44 0 306 287 88 14 chr9 107247302 107247654 -35023790 + L1MB1 LINE L1 2732 3109 -3037 525 305 86 12 chr9 107247688 107248094 -35023350 + L1MB1 LINE L1 3520 3955 -2191 270 273 8 50 chr9 107248621 107248742 -35022702 + L1MB1 LINE L1 5440 5555 -615 416 237 17 42 chr9 107248892 107249010 -35022434 + Charlie4 DNA MER1_type 1 115 -1846 225 0 0 0 chr9 107249085 107249110 -35022334 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr9 107249213 107249236 -35022208 + AT_rich Low_complexity Low_complexity 1 23 0 702 182 13 19 chr9 107249396 107249555 -35021889 + L1MA10 LINE L1 6170 6327 -7 2349 85 0 3 chr9 107249607 107249902 -35021542 - AluSg SINE Alu -16 294 1 2352 172 9 51 chr9 107250083 107250247 -35021197 + L1MB1 LINE L1 5660 5829 -339 1580 124 0 0 chr9 107250247 107250472 -35020972 + AluSq SINE Alu 81 305 -8 2352 172 9 51 chr9 107250472 107250836 -35020608 + L1MB1 LINE L1 5829 6166 -2 554 302 53 41 chr9 107250877 107251295 -35020149 + L1ME LINE L1 116 548 -5522 273 202 56 11 chr9 107252159 107252248 -35019196 + L1ME4a LINE L1 6021 6113 -8 2211 98 0 3 chr9 107252300 107252586 -35018858 + AluSg SINE Alu 1 285 -25 21 36 0 0 chr9 107254317 107254345 -35017099 + AT_rich Low_complexity Low_complexity 1 28 0 2403 87 0 0 chr9 107254521 107254820 -35016624 - AluSg SINE Alu -11 299 1 189 0 0 0 chr9 107254985 107255006 -35016438 + (A)n Simple_repeat Simple_repeat 1 21 0 348 296 66 77 chr9 107255135 107255422 -35016022 - L1M4 LINE L1 -2066 4080 3797 2375 96 0 3 chr9 107255914 107256227 -35015217 + AluSx SINE Alu 1 312 0 25 0 0 0 chr9 107256656 107256681 -35014763 + AT_rich Low_complexity Low_complexity 1 25 0 2207 159 76 5 chr9 107256793 107257190 -35014254 + LTR32 LTR ERVL 47 471 0 2333 119 0 0 chr9 107258073 107258384 -35013060 + AluSx SINE Alu 1 311 -1 2205 121 0 3 chr9 107258481 107258786 -35012658 + AluSx SINE Alu 3 306 -6 612 255 7 13 chr9 107258996 107259149 -35012295 + MIR SINE MIR 3 154 -108 212 176 0 0 chr9 107259486 107259520 -35011924 + (CATA)n Simple_repeat Simple_repeat 3 36 0 251 113 19 0 chr9 107261278 107261331 -35010113 + CT-rich Low_complexity Low_complexity 1 54 0 267 245 38 9 chr9 107261347 107261453 -35009991 + CT-rich Low_complexity Low_complexity 1 109 0 684 323 113 23 chr9 107261559 107261660 -35009784 + MLT1K LTR MaLR 69 160 -428 591 53 0 0 chr9 107261660 107261735 -35009709 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 684 323 113 23 chr9 107261735 107262103 -35009341 + MLT1K LTR MaLR 160 580 -8 754 190 0 0 chr9 107262722 107262843 -35008601 + FLAM_A SINE Alu 1 121 -12 371 310 204 42 chr9 107262869 107263331 -35008113 + L2 LINE L2 2778 3312 -1 2051 97 0 0 chr9 107264174 107264442 -35007002 + AluY SINE Alu 1 268 -43 511 239 19 19 chr9 107264463 107264618 -35006826 + GA-rich Low_complexity Low_complexity 2 156 0 525 367 0 0 chr9 107264618 107264757 -35006687 + A-rich Low_complexity Low_complexity 1 139 0 33 66 0 0 chr9 107264833 107264894 -35006550 + AT_rich Low_complexity Low_complexity 1 61 0 26 0 0 0 chr9 107265013 107265039 -35006405 + AT_rich Low_complexity Low_complexity 1 26 0 294 165 24 35 chr9 107265293 107265378 -35006066 + GA-rich Low_complexity Low_complexity 3 86 0 2399 81 0 0 chr9 107265625 107265920 -35005524 + AluSg SINE Alu 1 295 -15 232 231 150 54 chr9 107266478 107266625 -35004819 + L1ME LINE L1 9 169 -5901 3360 110 6 33 chr9 107266675 107267195 -35004249 + MER84 LTR ERV1 2 507 0 640 259 120 36 chr9 107267200 107267666 -35003778 + L1ME LINE L1 183 719 -5351 2353 218 63 20 chr9 107267668 107268301 -35003143 + L1ME2 LINE L1 5326 5985 -179 413 271 98 56 chr9 107268319 107268728 -35002716 - L1MEc LINE L1 -4096 2625 2200 258 286 11 11 chr9 107268861 107268993 -35002451 - L1MEc LINE L1 -4592 1987 1846 2144 119 0 0 chr9 107269205 107269512 -35001932 + AluSq SINE Alu 1 307 0 29655 135 21 64 chr9 107269524 107275188 -34996256 + L1P LINE L1 12 5420 -743 491 239 77 40 chr9 107275230 107275527 -34995917 + L1ME LINE L1 700 1007 -5063 499 269 162 29 chr9 107275534 107275842 -34995602 + MLT1L LTR MaLR 19 367 -248 258 273 127 13 chr9 107275879 107276029 -34995415 + MLT1L LTR MaLR 439 605 -10 285 0 43 22 chr9 107276365 107276411 -34995033 + (TTTTTA)n Simple_repeat Simple_repeat 2 48 0 2093 93 14 4 chr9 107277250 107277552 -34993892 - AluSc SINE Alu 0 305 1 493 169 119 8 chr9 107277590 107277708 -34993736 + L1ME4a LINE L1 5990 6120 -1 220 180 80 0 chr9 107278615 107278665 -34992779 - MIR SINE MIR -75 187 134 258 228 10 10 chr9 107279903 107279992 -34991452 - L1ME4a LINE L1 -49 6027 1211 393 286 42 32 chr9 107280299 107280488 -34990956 - L1M4 LINE L1 -2073 4073 3883 182 61 0 61 chr9 107281571 107281604 -34989840 + (TTCTCC)n Simple_repeat Simple_repeat 2 32 0 26264 34 1 2 chr9 107282395 107286367 -34985077 + L1PA4 LINE L1 2183 6154 -1 2371 63 0 7 chr9 107286456 107286743 -34984701 + AluY SINE Alu 1 285 -26 351 0 0 0 chr9 107286743 107286782 -34984662 + (CA)n Simple_repeat Simple_repeat 2 40 0 677 287 38 42 chr9 107286956 107287217 -34984227 + MIR SINE MIR 2 261 -1 2045 122 3 13 chr9 107288154 107288457 -34982987 + AluSc SINE Alu 1 300 -9 366 281 14 14 chr9 107289835 107289974 -34981470 + CT-rich Low_complexity Low_complexity 2 140 0 27 29 0 0 chr9 107290032 107290066 -34981378 + AT_rich Low_complexity Low_complexity 1 34 0 752 307 114 23 chr9 107290079 107290473 -34980971 + MLT1K LTR MaLR 95 524 -64 11557 184 72 22 chr9 107290506 107292973 -34978471 + L1PBa LINE L1 6 2349 -4513 2448 81 0 0 chr9 107292973 107293283 -34978161 + AluY SINE Alu 1 310 -1 11557 184 72 22 chr9 107293283 107295978 -34975466 + L1PBa LINE L1 2349 5421 -1441 245 349 96 12 chr9 107296055 107296221 -34975223 + MIR SINE MIR 49 228 -34 196 250 0 39 chr9 107296346 107296398 -34975046 + L2 LINE L2 3264 3313 0 2388 66 3 0 chr9 107297175 107297478 -34973966 + AluY SINE Alu 3 306 -5 759 268 251 7 chr9 107297483 107297782 -34973662 + L2 LINE L2 2334 2705 -609 442 210 61 83 chr9 107297787 107298016 -34973428 + L1ME2 LINE L1 5922 6145 -19 2057 94 4 14 chr9 107298183 107298460 -34972984 + AluSq SINE Alu 1 274 -39 330 274 37 30 chr9 107298479 107298614 -34972830 + L1MC5 LINE L1 7782 7917 -44 826 101 39 0 chr9 107299242 107299371 -34972073 + L1MA2 LINE L1 6171 6304 0 2055 112 13 3 chr9 107300286 107300589 -34970855 - AluSp SINE Alu -7 306 1 23 33 0 0 chr9 107300592 107300622 -34970822 + AT_rich Low_complexity Low_complexity 1 30 0 29 98 0 0 chr9 107300774 107300866 -34970578 + AT_rich Low_complexity Low_complexity 1 92 0 588 296 89 45 chr9 107301583 107301746 -34969698 + L1MB3 LINE L1 2688 2842 -3304 2350 73 11 0 chr9 107301746 107302033 -34969411 - AluSc SINE Alu -6 303 14 588 296 89 45 chr9 107302033 107302251 -34969193 + L1MB3 LINE L1 2842 3086 -3060 5604 197 9 15 chr9 107302257 107303529 -34967915 + L1MB3 LINE L1 4114 5377 -769 2751 120 17 28 chr9 107303531 107303871 -34967573 + L1MB3 LINE L1 5717 6052 -131 2022 122 48 0 chr9 107303871 107304165 -34967279 + AluSx SINE Alu 1 308 -4 2751 120 17 28 chr9 107304165 107304292 -34967152 + L1MB3 LINE L1 6052 6179 -4 189 0 0 0 chr9 107304299 107304320 -34967124 + (TA)n Simple_repeat Simple_repeat 1 21 0 634 285 51 53 chr9 107304331 107304843 -34966601 + L1M4 LINE L1 3520 4030 -2116 1078 185 126 16 chr9 107304904 107305038 -34966406 - AluJb SINE Alu -30 282 164 207 0 0 0 chr9 107305038 107305061 -34966383 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1078 185 126 16 chr9 107305061 107305180 -34966264 - AluJb SINE Alu -148 164 1 192 284 0 0 chr9 107305267 107305334 -34966110 + GA-rich Low_complexity Low_complexity 1 67 0 398 333 47 31 chr9 107305334 107305526 -34965918 + L1M4 LINE L1 4138 4332 -1814 308 346 0 0 chr9 107305762 107305866 -34965578 + GA-rich Low_complexity Low_complexity 2 105 0 524 314 73 40 chr9 107305879 107306939 -34964505 + L1ME LINE L1 4156 5250 -896 2114 97 0 35 chr9 107306955 107307265 -34964179 - AluSg SINE Alu -11 299 1 23 0 0 0 chr9 107307267 107307290 -34964154 + AT_rich Low_complexity Low_complexity 1 23 0 234 131 33 98 chr9 107307302 107307363 -34964081 + AluSp SINE Alu 136 192 -111 332 251 70 14 chr9 107307373 107307627 -34963817 + L1ME LINE L1 5284 5554 -673 193 322 34 0 chr9 107307822 107307881 -34963563 + MIR SINE MIR 62 122 -86 1872 112 8 8 chr9 107308315 107308574 -34962870 - AluSq SINE Alu -53 260 2 21 0 0 0 chr9 107308585 107308606 -34962838 + AT_rich Low_complexity Low_complexity 1 21 0 2538 50 0 0 chr9 107308729 107309028 -34962416 - AluY SINE Alu -11 300 2 190 404 0 0 chr9 107310108 107310160 -34961284 + L2 LINE L2 3211 3262 -10 21 36 0 0 chr9 107310190 107310218 -34961226 + AT_rich Low_complexity Low_complexity 1 28 0 381 214 11 11 chr9 107310785 107310874 -34960570 + L1ME LINE L1 5573 5661 -503 1399 188 57 96 chr9 107310905 107311416 -34960028 + Charlie4a DNA MER1_type 18 508 0 192 277 12 84 chr9 107311943 107312026 -34959418 + L2 LINE L2 3025 3101 -212 256 265 160 33 chr9 107312297 107312478 -34958966 + MIR SINE MIR 49 252 -10 425 260 132 55 chr9 107312563 107312782 -34958662 + MLT1J2 LTR MaLR 215 450 0 484 270 79 61 chr9 107312786 107313064 -34958380 + HAL1 LINE L1 549 831 -1676 621 254 147 9 chr9 107313165 107313397 -34958047 + L2 LINE L2 3050 3313 0 456 284 7 0 chr9 107313832 107313980 -34957464 + HAL1 LINE L1 2249 2397 -110 24 32 0 0 chr9 107316027 107316058 -34955386 + AT_rich Low_complexity Low_complexity 1 31 0 216 97 0 0 chr9 107316501 107316532 -34954912 + (TG)n Simple_repeat Simple_repeat 2 32 0 2563 104 16 39 chr9 107317272 107317658 -34953786 + MER51B LTR ERV1 1 377 0 613 220 78 31 chr9 107319325 107319516 -34951928 - MIR SINE MIR 0 262 63 2220 101 3 3 chr9 107321799 107322095 -34949349 + AluSq SINE Alu 1 296 -17 24 32 0 0 chr9 107322154 107322185 -34949259 + AT_rich Low_complexity Low_complexity 1 31 0 253 228 0 13 chr9 107322281 107322360 -34949084 + (TA)n Simple_repeat Simple_repeat 1 78 0 1703 144 25 28 chr9 107322489 107322773 -34948671 + AluJo SINE Alu 11 293 -19 208 253 53 53 chr9 107322821 107322896 -34948548 + L2 LINE L2 2275 2349 -965 276 259 0 89 chr9 107322983 107323118 -34948326 + L1ME LINE L1 4936 5058 -1088 22 0 0 0 chr9 107323267 107323289 -34948155 + AT_rich Low_complexity Low_complexity 1 22 0 1822 90 82 0 chr9 107323652 107323908 -34947536 - AluSx SINE Alu -8 304 28 246 308 8 17 chr9 107324219 107324339 -34947105 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 896 130 0 14 chr9 107324339 107324477 -34946967 + AluJo SINE Alu 1 136 -176 295 312 28 21 chr9 107324636 107324777 -34946667 + L1ME LINE L1 5681 5822 -299 222 337 95 47 chr9 107325015 107325184 -34946260 + MIR3 SINE MIR 19 195 -13 2436 78 0 34 chr9 107325248 107325569 -34945875 + AluSq SINE Alu 1 310 -3 21 0 0 0 chr9 107326554 107326575 -34944869 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 107326988 107327009 -34944435 + AT_rich Low_complexity Low_complexity 1 21 0 463 244 173 6 chr9 107327497 107327653 -34943791 + L1ME LINE L1 5480 5661 -509 1173 226 55 3 chr9 107327683 107327993 -34943451 + Charlie4a DNA MER1_type 26 351 -157 4955 128 69 7 chr9 107327993 107329396 -34942048 + L1MA5A LINE L1 4683 6177 -120 607 243 42 66 chr9 107329420 107329519 -34941925 + HAL1 LINE L1 2244 2344 -163 2269 98 0 0 chr9 107329519 107329815 -34941629 + AluSx SINE Alu 1 296 -16 607 243 42 66 chr9 107329815 107329974 -34941470 + HAL1 LINE L1 2344 2496 -11 1577 71 5 5 chr9 107330150 107330360 -34941084 + AluY SINE Alu 83 292 -19 2178 72 3 30 chr9 107331109 107331414 -34940030 - AluSg SINE Alu -13 297 1 182 213 43 21 chr9 107333741 107333788 -34937656 + L3 LINE CR1 1529 1576 -1 1017 183 22 38 chr9 107334441 107334736 -34936708 + MER2 DNA MER2_type 2 344 -1 24 53 0 0 chr9 107335084 107335122 -34936322 + AT_rich Low_complexity Low_complexity 1 38 0 2263 115 0 0 chr9 107335151 107335456 -34935988 + AluSx SINE Alu 1 305 -7 6689 96 6 43 chr9 107337199 107338282 -34933162 - L1PA14 LINE L1 -9 6152 5092 857 117 0 0 chr9 107338586 107338706 -34932738 + AluSc SINE Alu 190 309 0 203 293 0 0 chr9 107338875 107338916 -34932528 - L2 LINE L2 -18 3254 3214 1103 292 181 27 chr9 107339029 107339727 -34931717 + L3 LINE CR1 649 1453 -124 1024 153 0 48 chr9 107339948 107340137 -34931307 + FRAM SINE Alu 1 172 -4 2195 104 0 0 chr9 107340471 107340774 -34930670 + AluSc SINE Alu 1 303 0 214 250 0 0 chr9 107340944 107340984 -34930460 - L2 LINE L2 -19 3294 3255 284 237 13 13 chr9 107341083 107341159 -34930285 - MIR SINE MIR 0 262 187 216 0 0 0 chr9 107341631 107341655 -34929789 + (A)n Simple_repeat Simple_repeat 1 24 0 857 159 16 33 chr9 107341831 107342013 -34929431 - MER97b DNA MER1_type? -874 179 1 1139 170 55 41 chr9 107343059 107343330 -34928114 - ORSL DNA AcHobo 0 275 1 286 241 102 97 chr9 107343438 107343654 -34927790 - L2 LINE L2 -6 3266 3050 750 91 27 0 chr9 107343753 107343863 -34927581 + L1MA4A LINE L1 6099 6211 -92 262 276 54 60 chr9 107344478 107344557 -34926887 - MIR3 SINE MIR -21 187 109 2298 102 0 0 chr9 107344557 107344862 -34926582 + AluSq SINE Alu 1 305 -8 262 276 54 60 chr9 107344862 107344967 -34926477 - MIR3 SINE MIR -99 109 4 659 313 22 13 chr9 107345497 107345721 -34925723 + MIR SINE MIR 25 250 -12 2078 137 7 0 chr9 107346599 107346898 -34924546 + AluSx SINE Alu 1 301 -11 205 295 19 67 chr9 107347008 107347113 -34924331 - MIR SINE MIR -161 101 2 2108 100 0 0 chr9 107347327 107347598 -34923846 - AluSx SINE Alu -8 304 34 288 0 0 0 chr9 107347663 107347695 -34923749 + (TG)n Simple_repeat Simple_repeat 2 33 0 456 297 161 7 chr9 107348036 107348191 -34923253 - MIR SINE MIR -81 181 3 301 319 103 84 chr9 107349012 107349285 -34922159 + L2 LINE L2 2960 3237 -35 1920 145 0 3 chr9 107349899 107350203 -34921241 + AluSx SINE Alu 1 303 -9 774 230 20 0 chr9 107350210 107350358 -34921086 - FRAM SINE Alu -20 156 6 730 216 47 66 chr9 107350404 107350724 -34920720 - L1ME4a LINE L1 -34 6087 5774 192 97 0 0 chr9 107350769 107350800 -34920644 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 980 73 41 0 chr9 107350887 107351010 -34920434 + AluSq/x SINE Alu 5 132 -180 844 125 14 168 chr9 107351013 107351221 -34920223 + AluSg/x SINE Alu 98 273 -37 305 275 56 35 chr9 107351226 107351289 -34920155 + L1ME4a LINE L1 5977 6037 -84 2418 81 3 7 chr9 107351289 107351597 -34919847 + AluSx SINE Alu 6 312 0 305 275 56 35 chr9 107351597 107351675 -34919769 + L1ME4a LINE L1 6037 6121 0 491 81 81 0 chr9 107351944 107352018 -34919426 + L1MA9 LINE L1 6228 6307 -5 756 277 94 21 chr9 107352290 107352629 -34918815 + L1ME4a LINE L1 5540 5903 -218 2278 113 0 3 chr9 107352741 107353052 -34918392 + AluSg SINE Alu 1 310 0 433 304 138 6 chr9 107353169 107353350 -34918094 - MIR SINE MIR 0 262 58 415 292 172 29 chr9 107353518 107353727 -34917717 - MIR SINE MIR -16 246 8 187 352 80 0 chr9 107353831 107353919 -34917525 + L2 LINE L2 3173 3267 -5 803 222 80 5 chr9 107354068 107354280 -34917164 - MIR SINE MIR -25 237 10 260 244 46 84 chr9 107354859 107354923 -34916521 + MIR SINE MIR 107 165 -97 714 194 60 116 chr9 107354923 107355155 -34916289 - MER20 DNA MER1_type 0 219 1 260 244 46 84 chr9 107355155 107355221 -34916223 + MIR SINE MIR 165 232 -30 493 307 76 77 chr9 107355583 107356318 -34915126 + L1ME LINE L1 4099 4834 -1312 2019 153 3 0 chr9 107356318 107356619 -34914825 - AluJo SINE Alu 0 312 11 493 307 76 77 chr9 107356619 107356765 -34914679 + L1ME LINE L1 4834 4979 -1167 390 277 127 38 chr9 107356872 107357139 -34914305 + L1ME LINE L1 5523 5813 -351 2107 129 3 3 chr9 107357208 107357502 -34913942 - AluSx SINE Alu -18 294 1 193 341 47 12 chr9 107357521 107357606 -34913838 + MIR SINE MIR 124 211 -51 1963 109 7 4 chr9 107357872 107358146 -34913298 + AluSg SINE Alu 5 279 -31 441 0 0 0 chr9 107358150 107358199 -34913245 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 427 281 102 69 chr9 107358242 107358705 -34912739 + L2 LINE L2 2831 3308 -5 269 330 38 9 chr9 107358718 107358824 -34912620 - MIR3 SINE MIR -48 160 52 2072 139 0 0 chr9 107359012 107359306 -34912138 + AluSx SINE Alu 1 294 -18 290 266 0 0 chr9 107359906 107359970 -34911474 - L2 LINE L2 -3 3269 3206 22 0 0 0 chr9 107360793 107360815 -34910629 + AT_rich Low_complexity Low_complexity 1 22 0 444 290 31 49 chr9 107360875 107361037 -34910407 + MIR3 SINE MIR 43 201 -7 556 295 66 25 chr9 107361310 107361554 -34909890 + MIR SINE MIR 9 262 0 2344 78 7 0 chr9 107363887 107364181 -34907263 + AluSc SINE Alu 1 296 -13 399 291 52 61 chr9 107365473 107365686 -34905758 + MIR SINE MIR 46 256 -6 235 311 155 46 chr9 107366472 107367103 -34904341 + L2 LINE L2 2566 3271 -1 2165 184 204 36 chr9 107367652 107367984 -34903460 + L1ME1 LINE L1 5369 5644 -520 2102 112 21 0 chr9 107367984 107368269 -34903175 + AluSx SINE Alu 1 291 -21 2165 184 204 36 chr9 107368269 107368602 -34902842 + L1ME1 LINE L1 5644 6155 -9 575 323 26 26 chr9 107368805 107369034 -34902410 - L2 LINE L2 -11 3302 3074 423 0 0 0 chr9 107369207 107369254 -34902190 + (CA)n Simple_repeat Simple_repeat 2 48 0 2101 142 0 7 chr9 107370297 107370606 -34900838 - AluSx SINE Alu -5 307 1 258 131 66 0 chr9 107370651 107370712 -34900732 - L1MA9 LINE L1 -13 6299 6235 1055 163 0 0 chr9 107371853 107372019 -34899425 + FRAM SINE Alu 2 167 -9 320 281 130 24 chr9 107372876 107373003 -34898441 + MIR SINE MIR 16 153 -66 2389 44 0 20 chr9 107373375 107373698 -34897746 - AluY SINE Alu 0 311 1 39 85 0 0 chr9 107373970 107374017 -34897427 + AT_rich Low_complexity Low_complexity 1 47 0 231 330 0 11 chr9 107376328 107376419 -34895025 + MARNA DNA Mariner 246 335 -251 3158 258 186 25 chr9 107376508 107378028 -34893416 + L2 LINE L2 1314 3088 -225 746 152 101 32 chr9 107378040 107378345 -34893099 + MLT1A2 LTR MaLR 1 374 0 355 263 168 21 chr9 107378345 107378535 -34892909 + L2 LINE L2 3095 3312 -1 1645 302 181 31 chr9 107379428 107379905 -34891539 + L2 LINE L2 1735 2139 -1174 2051 122 14 0 chr9 107379905 107380193 -34891251 - AluSq SINE Alu -21 292 1 1645 302 181 31 chr9 107380193 107381060 -34890384 + L2 LINE L2 2139 3313 0 384 238 111 16 chr9 107381124 107381250 -34890194 + MIR SINE MIR 65 202 -60 2168 109 13 13 chr9 107381413 107381724 -34889720 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr9 107384511 107384532 -34886912 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr9 107385822 107385847 -34885597 + (CATTG)n Simple_repeat Simple_repeat 1 25 0 2095 109 0 7 chr9 107386327 107386610 -34884834 - AluSc SINE Alu -28 281 1 241 263 0 0 chr9 107386782 107386839 -34884605 + MIR SINE MIR 205 261 -1 250 260 228 8 chr9 107386842 107386965 -34884479 - MIR SINE MIR -64 198 49 607 283 96 5 chr9 107387452 107387671 -34883773 - MIR SINE MIR -12 250 12 469 260 144 28 chr9 107387676 107387857 -34883587 - MIR SINE MIR -59 203 2 538 271 143 21 chr9 107388122 107388402 -34883042 + L1MC4a LINE L1 5616 5929 -1879 892 217 47 54 chr9 107391185 107391443 -34880001 - MER112 DNA MER1_type 0 256 1 2343 84 0 7 chr9 107391478 107391775 -34879669 + AluSq SINE Alu 1 295 -18 594 260 127 39 chr9 107391936 107392237 -34879207 + L1ME4a LINE L1 5626 5974 -147 683 175 15 15 chr9 107392237 107392374 -34879070 + L1MB7 LINE L1 6039 6175 -9 594 260 127 39 chr9 107392374 107392483 -34878961 + L1ME4a LINE L1 5974 6072 -49 2060 117 28 0 chr9 107393101 107393391 -34878053 - AluSc SINE Alu -11 298 1 189 0 0 0 chr9 107396179 107396200 -34875244 + (A)n Simple_repeat Simple_repeat 1 21 0 613 373 66 41 chr9 107396514 107397168 -34874276 - L2 LINE L2 -724 2590 1921 748 273 82 122 chr9 107398087 107398793 -34872651 + L3 LINE CR1 483 1160 -417 316 291 154 8 chr9 107398928 107399045 -34872399 + L3 LINE CR1 1228 1361 -216 189 121 0 0 chr9 107399835 107399868 -34871576 + (CA)n Simple_repeat Simple_repeat 2 34 0 197 312 32 25 chr9 107400410 107400539 -34870905 - MIR SINE MIR -28 234 15 468 0 0 0 chr9 107400560 107400612 -34870832 + (CA)n Simple_repeat Simple_repeat 1 52 0 27 29 0 0 chr9 107400705 107400739 -34870705 + AT_rich Low_complexity Low_complexity 1 34 0 695 231 39 33 chr9 107401333 107401515 -34869929 - MIR SINE MIR -16 246 64 220 211 26 105 chr9 107402200 107402276 -34869168 - MIR SINE MIR -57 151 82 2239 93 0 7 chr9 107402411 107402700 -34868744 - AluSg SINE Alu -23 287 1 2153 115 0 7 chr9 107402729 107403024 -34868420 - AluSq SINE Alu -20 293 1 2312 101 10 0 chr9 107404778 107405085 -34866359 - AluSq SINE Alu -3 310 1 309 344 86 0 chr9 107405425 107405576 -34865868 - MIR SINE MIR -50 212 49 2029 152 0 0 chr9 107406251 107406547 -34864897 - AluSx SINE Alu -10 302 7 399 306 125 12 chr9 107406742 107406902 -34864542 - MIR3 SINE MIR -15 193 16 2377 98 0 0 chr9 107407001 107407308 -34864136 + AluSx SINE Alu 1 307 -5 510 300 178 37 chr9 107407895 107408414 -34863030 - L2 LINE L2 0 3313 2695 204 324 56 84 chr9 107408519 107408661 -34862783 + MIR3 SINE MIR 62 199 -9 25 0 0 0 chr9 107408688 107408713 -34862731 + AT_rich Low_complexity Low_complexity 1 25 0 2148 123 3 0 chr9 107408713 107409013 -34862431 + AluSg SINE Alu 2 302 -8 350 229 15 76 chr9 107409013 107409144 -34862300 - L1MC4 LINE L1 -1340 6702 6580 393 341 90 60 chr9 107409458 107409945 -34861499 - L3 LINE CR1 -959 618 117 222 298 0 0 chr9 107410970 107411027 -34860417 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 249 33 0 0 chr9 107411313 107411343 -34860101 + (TA)n Simple_repeat Simple_repeat 1 30 0 305 245 113 9 chr9 107412462 107412568 -34858876 + MIR SINE MIR 30 146 -62 527 196 36 27 chr9 107412979 107413091 -34858353 - MIR SINE MIR -133 129 17 951 241 79 9 chr9 107413450 107413678 -34857766 - MIR SINE MIR -17 245 2 2120 119 7 7 chr9 107414585 107414887 -34856557 - AluSq SINE Alu -11 302 1 2249 103 3 13 chr9 107415888 107416199 -34855245 + AluSp SINE Alu 1 308 -5 410 323 8 15 chr9 107416451 107416581 -34854863 + MER5A DNA MER1_type 60 188 -1 483 138 69 0 chr9 107416914 107417001 -34854443 - MER5A DNA MER1_type -83 106 14 212 308 65 65 chr9 107417684 107417791 -34853653 + L2 LINE L2 3166 3272 0 255 173 0 0 chr9 107417795 107417847 -34853597 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 588 242 153 0 chr9 107418899 107419056 -34852388 - MER5A DNA MER1_type 0 189 9 386 317 68 29 chr9 107419193 107419398 -34852046 + MIR SINE MIR 49 261 -1 459 257 166 23 chr9 107420250 107420425 -34851019 - MIR SINE MIR -2 260 61 2293 94 0 0 chr9 107422136 107422444 -34849000 + AluSc SINE Alu 1 308 -1 2584 212 28 21 chr9 107424137 107424707 -34846737 + L1MD2 LINE L1 5774 6347 -12 313 375 23 35 chr9 107424719 107424980 -34846464 - L2 LINE L2 -177 3095 2838 554 248 183 20 chr9 107425886 107426088 -34845356 - MIR SINE MIR -6 256 22 608 324 5 0 chr9 107426473 107426658 -34844786 + MIR SINE MIR 49 234 -28 282 270 0 80 chr9 107428470 107428570 -34842874 - MIR SINE MIR -64 144 53 263 286 214 32 chr9 107428991 107429145 -34842299 + MIR SINE MIR 81 262 0 640 255 104 72 chr9 107429272 107429703 -34841741 + LTR16A LTR ERVL 6 450 0 482 230 116 50 chr9 107429822 107429988 -34841456 + MIR3 SINE MIR 1 178 -30 351 0 0 0 chr9 107431117 107431156 -34840288 + (CA)n Simple_repeat Simple_repeat 2 40 0 2057 115 3 3 chr9 107431581 107431893 -34839551 + AluSx SINE Alu 1 312 0 189 0 0 0 chr9 107432323 107432344 -34839100 + (A)n Simple_repeat Simple_repeat 1 21 0 1195 112 0 0 chr9 107432378 107432547 -34838897 - AluSq SINE Alu 0 313 145 31 26 0 0 chr9 107433349 107433387 -34838057 + AT_rich Low_complexity Low_complexity 1 38 0 271 355 9 9 chr9 107433560 107433667 -34837777 - L2 LINE L2 0 3272 3166 400 294 49 54 chr9 107434038 107434222 -34837222 - MIR SINE MIR -71 191 9 506 280 5 83 chr9 107434310 107434343 -34837101 - MIR SINE MIR -80 182 148 1643 197 3 0 chr9 107434343 107434652 -34836792 - AluJb SINE Alu 0 312 3 506 280 5 83 chr9 107434652 107434811 -34836633 - MIR SINE MIR -114 148 5 450 258 114 45 chr9 107435245 107435578 -34835866 - L1ME4a LINE L1 -240 5881 5526 262 163 0 0 chr9 107435624 107435667 -34835777 + L1MC4a LINE L1 6392 6434 -1374 2053 130 7 0 chr9 107436140 107436441 -34835003 + AluSx SINE Alu 1 303 -9 236 273 10 10 chr9 107436488 107436587 -34834857 + L2 LINE L2 2213 2311 -1003 424 304 98 37 chr9 107438800 107439014 -34832430 + MIR SINE MIR 25 251 -11 1972 82 82 0 chr9 107439217 107439496 -34831948 + AluSp SINE Alu 1 302 -11 2326 53 0 26 chr9 107439505 107439807 -34831637 + AluY SINE Alu 5 298 -13 443 262 180 19 chr9 107440490 107440696 -34830748 + MIR SINE MIR 21 259 -3 224 278 0 0 chr9 107440696 107440750 -34830694 + (TTG)n Simple_repeat Simple_repeat 3 56 0 1630 137 25 3 chr9 107440805 107441090 -34830354 - L1MA9 LINE L1 -1 6311 6021 290 144 0 0 chr9 107441093 107441150 -34830294 - L1MA9 LINE L1 -232 5936 5880 278 271 86 43 chr9 107441213 107441353 -34830091 - L2 LINE L2 0 3272 3127 219 247 13 26 chr9 107441701 107441778 -34829666 + GA-rich Low_complexity Low_complexity 5 80 0 554 241 142 6 chr9 107441869 107442031 -34829413 + MER5A DNA MER1_type 4 187 -2 211 367 58 17 chr9 107442300 107442327 -34829117 + MIR SINE MIR 8 32 -176 2194 90 13 13 chr9 107442327 107442638 -34828806 + AluSq SINE Alu 1 311 -2 211 367 58 17 chr9 107442638 107442730 -34828714 + MIR SINE MIR 32 133 -75 822 268 134 24 chr9 107443906 107444481 -34826963 + L2 LINE L2 2646 3299 -14 512 284 68 12 chr9 107444657 107444819 -34826625 + MIR SINE MIR 13 183 -79 265 242 0 0 chr9 107445666 107445732 -34825712 + L1ME4a LINE L1 6052 6117 -4 426 361 0 18 chr9 107448454 107448623 -34822821 + MIR SINE MIR 78 243 -19 290 261 26 17 chr9 107449014 107449129 -34822315 + (TA)n Simple_repeat Simple_repeat 2 117 0 344 255 87 16 chr9 107449245 107449429 -34822015 - MER113 DNA MER1_type? -307 214 18 382 251 110 55 chr9 107449444 107449506 -34821938 + MER5A DNA MER1_type 15 72 -117 2077 127 0 0 chr9 107449506 107449805 -34821639 + AluSx SINE Alu 1 299 -13 382 251 110 55 chr9 107449805 107449905 -34821539 + MER5A DNA MER1_type 72 186 -3 1947 128 0 0 chr9 107451293 107451595 -34819849 - AluSx SINE Alu 0 302 1 422 303 102 78 chr9 107452576 107452998 -34818446 + L2 LINE L2 2841 3272 0 303 318 73 0 chr9 107454699 107454809 -34816635 + L2 LINE L2 3188 3305 -8 2368 225 59 29 chr9 107455042 107455638 -34815806 + MLT1E2 LTR MaLR 5 618 -8 271 222 32 0 chr9 107456054 107456117 -34815327 + L2 LINE L2 3249 3313 0 1843 134 0 26 chr9 107456372 107456678 -34814766 - AluSx SINE Alu -14 298 1 438 296 84 30 chr9 107456740 107456943 -34814501 - MIR SINE MIR -3 259 46 1850 118 7 0 chr9 107458196 107458468 -34812976 + AluSx SINE Alu 1 274 -38 1661 106 4 0 chr9 107458469 107458705 -34812739 - AluSq SINE Alu -76 237 1 232 260 260 0 chr9 107460557 107460657 -34810787 + L2 LINE L2 3187 3312 -1 2213 98 3 13 chr9 107460942 107461249 -34810195 + AluSx SINE Alu 1 304 -8 361 213 21 53 chr9 107461278 107461372 -34810072 + LTR16A LTR ERVL 314 404 -46 2006 115 3 0 chr9 107461926 107462212 -34809232 - AluSx SINE Alu -8 304 18 348 24 0 0 chr9 107463223 107463264 -34808180 + (CA)n Simple_repeat Simple_repeat 2 42 0 1938 137 0 22 chr9 107463267 107463582 -34807862 - AluSg SINE Alu -2 308 1 622 189 92 70 chr9 107463743 107463805 -34807639 - MER5A DNA MER1_type 0 189 130 270 0 0 0 chr9 107463805 107463835 -34807609 + (CCGGG)n Simple_repeat Simple_repeat 5 34 0 622 189 92 70 chr9 107463835 107463957 -34807487 - MER5A DNA MER1_type -59 130 1 369 341 54 24 chr9 107464189 107464356 -34807088 + MIR3 SINE MIR 5 176 -32 461 333 5 46 chr9 107464966 107465161 -34806283 - MER5A DNA MER1_type -2 187 1 248 309 151 8 chr9 107465161 107465283 -34806161 + L2 LINE L2 3125 3264 -8 296 264 226 9 chr9 107465583 107465689 -34805755 + MIR SINE MIR 20 148 -60 330 348 43 37 chr9 107466242 107466256 -34805188 + MIR SINE MIR 1 13 -195 528 181 53 122 chr9 107466256 107466396 -34805048 + MER5B DNA MER1_type 4 129 -49 1586 127 37 0 chr9 107466396 107466640 -34804804 + AluSx SINE Alu 49 301 -11 528 181 53 122 chr9 107466640 107466687 -34804757 + MER5B DNA MER1_type 129 178 0 330 348 43 37 chr9 107466687 107466859 -34804585 + MIR SINE MIR 13 147 -61 263 223 0 117 chr9 107467483 107467586 -34803858 + L2 LINE L2 2994 3084 -188 2068 100 10 30 chr9 107467590 107467891 -34803553 - AluSq SINE Alu -17 296 2 277 100 40 0 chr9 107468031 107468081 -34803363 + L2 LINE L2 3221 3272 0 221 148 0 37 chr9 107468083 107468137 -34803307 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 307 325 8 8 chr9 107468367 107468493 -34802951 + MIR SINE MIR 136 261 -1 180 176 0 0 chr9 107468631 107468665 -34802779 + (TATG)n Simple_repeat Simple_repeat 2 35 0 251 233 41 0 chr9 107468972 107469045 -34802399 + MIR3 SINE MIR 116 191 -17 301 254 16 114 chr9 107469058 107469213 -34802231 + MIR SINE MIR 11 151 -62 2078 79 30 0 chr9 107469213 107469480 -34801964 + AluSp SINE Alu 32 306 -7 297 260 14 37 chr9 107470067 107470191 -34801253 + GA-rich Low_complexity Low_complexity 4 210 0 270 290 80 10 chr9 107470900 107471000 -34800444 + MIR SINE MIR 41 147 -115 1027 221 96 70 chr9 107471613 107471769 -34799675 + MSTC LTR MaLR 1 151 -277 2732 88 58 23 chr9 107471769 107472202 -34799242 - LTR7 LTR ERV1 -2 448 1 1027 221 96 70 chr9 107472202 107472462 -34798982 + MSTC LTR MaLR 151 428 0 209 315 13 27 chr9 107472778 107472927 -34798517 + GA-rich Low_complexity Low_complexity 3 149 0 23 78 0 0 chr9 107473134 107473185 -34798259 + AT_rich Low_complexity Low_complexity 1 51 0 383 243 113 51 chr9 107473248 107473425 -34798019 - MIR SINE MIR -64 198 11 338 283 48 48 chr9 107473525 107473736 -34797708 + MIR SINE MIR 2 223 -39 308 340 0 0 chr9 107474692 107474789 -34796655 + MIR SINE MIR 41 137 -71 794 221 70 0 chr9 107474856 107475069 -34796375 - MIR SINE MIR -32 230 3 1732 119 0 105 chr9 107475358 107475702 -34795742 + AluSg SINE Alu 1 308 -2 1880 80 6 148 chr9 107475714 107475856 -34795588 + AluSx SINE Alu 2 66 -236 2863 75 15 19 chr9 107475856 107476268 -34795176 + SVA Other Other 635 1044 -342 1880 80 6 148 chr9 107476268 107476476 -34794968 + AluSx SINE Alu 66 302 0 231 138 69 52 chr9 107477983 107478041 -34793403 - MER69 DNA AcHobo 0 2526 2468 473 222 111 30 chr9 107478060 107478195 -34793249 - MER69 DNA AcHobo -2377 149 4 283 330 52 0 chr9 107478421 107478536 -34792908 - L2 LINE L2 -5 3267 3147 263 226 0 0 chr9 107478538 107478591 -34792853 - 5S rRNA rRNA -2 119 67 185 224 41 0 chr9 107479647 107479696 -34791748 + MIR SINE MIR 81 131 -77 * 437 295 8 0 chr9 107479690 107479819 -34791625 + L2 LINE L2 3184 3313 0 182 167 0 0 chr9 107479838 107479868 -34791576 + MIR3 SINE MIR 151 180 -28 862 117 0 0 chr9 107480088 107480208 -34791236 + AluSc SINE Alu 190 309 0 201 250 0 0 chr9 107480378 107480418 -34791026 - L2 LINE L2 -19 3294 3255 920 294 181 27 chr9 107480531 107481229 -34790215 + L3 LINE CR1 649 1453 -124 1035 153 0 48 chr9 107481450 107481639 -34789805 + FRAM SINE Alu 1 172 -4 2221 104 0 0 chr9 107481973 107482276 -34789168 + AluSc SINE Alu 1 303 0 201 250 0 0 chr9 107482446 107482486 -34788958 - L2 LINE L2 -19 3294 3255 263 237 13 13 chr9 107482585 107482661 -34788783 - MIR SINE MIR 0 262 187 414 0 0 0 chr9 107483134 107483180 -34788264 + (A)n Simple_repeat Simple_repeat 1 46 0 861 170 16 33 chr9 107483351 107483533 -34787911 - MER97c DNA MER1_type? -911 179 1 1071 170 55 41 chr9 107484578 107484849 -34786595 - ORSL DNA AcHobo 0 275 1 252 256 90 38 chr9 107484957 107485090 -34786354 - L2 LINE L2 -6 3266 3127 743 91 27 0 chr9 107485272 107485382 -34786062 + L1MA4A LINE L1 6099 6211 -92 208 276 54 60 chr9 107485997 107486076 -34785368 - MIR3 SINE MIR -21 187 109 2318 102 0 0 chr9 107486076 107486381 -34785063 + AluSq SINE Alu 1 305 -8 208 276 54 60 chr9 107486381 107486486 -34784958 - MIR3 SINE MIR -99 109 4 598 313 22 13 chr9 107487016 107487240 -34784204 + MIR SINE MIR 25 250 -12 2099 137 7 0 chr9 107488118 107488417 -34783027 + AluSx SINE Alu 1 301 -11 2121 100 0 0 chr9 107488845 107489116 -34782328 - AluSx SINE Alu -8 304 34 288 0 0 0 chr9 107489181 107489213 -34782231 + (TG)n Simple_repeat Simple_repeat 2 33 0 410 297 161 7 chr9 107489554 107489709 -34781735 - MIR SINE MIR -81 181 3 220 322 103 84 chr9 107490530 107490803 -34780641 + L2 LINE L2 2960 3237 -35 2187 118 0 3 chr9 107491420 107491724 -34779720 + AluSx SINE Alu 1 303 -9 725 228 20 0 chr9 107491731 107491880 -34779564 - FRAM SINE Alu -19 157 6 700 216 47 66 chr9 107491926 107492246 -34779198 - L1ME4a LINE L1 -34 6087 5774 192 97 0 0 chr9 107492290 107492321 -34779123 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 987 73 41 0 chr9 107492408 107492531 -34778913 + AluSq/x SINE Alu 5 132 -181 773 125 14 168 chr9 107492534 107492742 -34778702 + AluSg/x SINE Alu 100 275 -37 294 275 56 35 chr9 107492747 107492810 -34778634 + L1ME4a LINE L1 5977 6037 -84 2435 81 3 7 chr9 107492810 107493118 -34778326 + AluSx SINE Alu 6 312 0 294 275 56 35 chr9 107493118 107493196 -34778248 + L1ME4a LINE L1 6037 6121 0 472 81 81 0 chr9 107493465 107493539 -34777905 + L1MA9 LINE L1 6228 6307 -5 724 277 94 21 chr9 107493811 107494150 -34777294 + L1ME4a LINE L1 5540 5903 -218 2305 109 0 3 chr9 107494262 107494573 -34776871 + AluSg SINE Alu 1 310 0 408 313 132 6 chr9 107494690 107494872 -34776572 - MIR SINE MIR 0 262 58 357 297 172 29 chr9 107495040 107495249 -34776195 - MIR SINE MIR -16 246 8 736 226 80 5 chr9 107495590 107495802 -34775642 - MIR SINE MIR -25 237 10 224 218 40 89 chr9 107496411 107496445 -34774999 + MIR SINE MIR 137 171 -91 663 190 60 116 chr9 107496445 107496677 -34774767 - MER20 DNA MER1_type 0 219 1 224 218 40 89 chr9 107496677 107496743 -34774701 + MIR SINE MIR 171 232 -30 453 346 70 40 chr9 107497105 107497706 -34773738 + L1ME LINE L1 4099 4717 -1429 1867 159 7 3 chr9 107497833 107498128 -34773316 - AluJo SINE Alu -6 306 11 376 277 127 38 chr9 107498381 107498648 -34772796 + L1ME LINE L1 5523 5813 -351 2123 129 3 3 chr9 107498717 107499011 -34772433 - AluSx SINE Alu -18 294 1 1994 107 11 0 chr9 107499381 107499653 -34771791 + AluSg SINE Alu 5 279 -31 369 0 0 0 chr9 107499657 107499698 -34771746 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 336 293 125 53 chr9 107499733 107500204 -34771240 + L2 LINE L2 2804 3308 -5 236 321 47 19 chr9 107500217 107500323 -34771121 - MIR3 SINE MIR -48 160 52 2077 139 0 0 chr9 107500511 107500805 -34770639 + AluSx SINE Alu 1 294 -18 270 266 0 0 chr9 107501405 107501469 -34769975 - L2 LINE L2 -3 3269 3206 22 0 0 0 chr9 107502292 107502314 -34769130 + AT_rich Low_complexity Low_complexity 1 22 0 399 290 31 49 chr9 107502374 107502536 -34768908 + MIR3 SINE MIR 43 201 -7 562 299 53 12 chr9 107502809 107503053 -34768391 + MIR SINE MIR 9 262 0 25 65 0 0 chr9 107503053 107503099 -34768345 + AT_rich Low_complexity Low_complexity 1 46 0 2368 75 7 0 chr9 107505388 107505681 -34765763 + AluSc SINE Alu 1 295 -14 338 249 77 46 chr9 107506988 107507187 -34764257 + MIR SINE MIR 57 256 -6 190 373 20 10 chr9 107508502 107508604 -34762840 + L2 LINE L2 3169 3271 -1 2144 184 204 36 chr9 107509153 107509485 -34761959 + L1ME1 LINE L1 5369 5644 -520 2125 112 21 0 chr9 107509485 107509770 -34761674 + AluSx SINE Alu 1 291 -21 2144 184 204 36 chr9 107509770 107510103 -34761341 + L1ME1 LINE L1 5644 6155 -9 546 290 30 30 chr9 107510306 107510506 -34760938 - L2 LINE L2 -11 3302 3103 387 0 0 0 chr9 107510708 107510751 -34760693 + (CA)n Simple_repeat Simple_repeat 2 44 0 2111 142 0 7 chr9 107511794 107512103 -34759341 - AluSx SINE Alu -5 307 1 250 131 66 0 chr9 107512148 107512209 -34759235 - L1MA9 LINE L1 -13 6299 6235 1066 163 0 0 chr9 107513350 107513516 -34757928 + FRAM SINE Alu 2 167 -9 284 281 130 24 chr9 107514373 107514500 -34756944 + MIR SINE MIR 16 153 -66 2433 40 0 20 chr9 107514872 107515195 -34756249 - AluY SINE Alu 0 311 1 2034 119 3 70 chr9 107515292 107515620 -34755824 + AluSq SINE Alu 1 306 -7 182 37 37 0 chr9 107517289 107517316 -34754128 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 1018 161 0 0 chr9 107517779 107517940 -34753504 - AluSg/x SINE Alu -15 297 137 457 264 7 27 chr9 107518238 107518386 -34753058 + MIR SINE MIR 13 157 -105 878 226 35 93 chr9 107518394 107518569 -34752875 - MER113 DNA MER1_type? 0 521 337 2269 89 7 0 chr9 107518569 107518860 -34752584 + AluSx SINE Alu 1 293 -19 878 226 35 93 chr9 107518860 107519136 -34752308 - MER113 DNA MER1_type? -184 337 96 207 286 117 0 chr9 107519579 107519656 -34751788 + L2 LINE L2 3187 3272 0 2176 124 0 7 chr9 107520423 107520721 -34750723 + AluSg SINE Alu 1 296 -14 319 282 94 8 chr9 107521143 107521260 -34750184 - MIR3 SINE MIR -11 197 71 2082 90 56 0 chr9 107521611 107521903 -34749541 - AluSg SINE Alu 0 307 1 383 296 32 8 chr9 107522001 107522126 -34749318 - MIR SINE MIR -115 147 20 417 308 118 5 chr9 107523514 107523709 -34747735 + MIR SINE MIR 35 251 -11 2070 128 0 17 chr9 107523815 107524111 -34747333 - AluSx SINE Alu -21 291 1 276 256 101 101 chr9 107524704 107524858 -34746586 + MIR SINE MIR 33 189 -73 1673 185 0 7 chr9 107524858 107525144 -34746300 + AluJb SINE Alu 7 290 -22 276 256 101 101 chr9 107525144 107525208 -34746236 + MIR SINE MIR 188 251 -11 2298 122 0 0 chr9 107525422 107525726 -34745718 + AluSx SINE Alu 1 304 -8 2289 85 3 3 chr9 107526191 107526484 -34744960 + AluSc SINE Alu 1 293 -16 210 105 0 0 chr9 107527545 107527583 -34743861 + (A)n Simple_repeat Simple_repeat 1 38 0 2257 86 27 0 chr9 107528024 107528325 -34743119 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr9 107529532 107529554 -34741890 + GC_rich Low_complexity Low_complexity 1 22 0 209 56 0 28 chr9 107529990 107530026 -34741418 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 377 130 58 0 chr9 107530251 107530320 -34741124 - Zaphod DNA AcHobo -31 4000 3928 225 200 0 18 chr9 107530410 107530465 -34740979 - MER115 DNA AcHobo -434 259 206 1142 264 123 35 chr9 107530471 107530901 -34740543 - MER115 DNA AcHobo -126 567 83 2182 106 27 0 chr9 107530901 107531193 -34740251 + AluSx SINE Alu 1 300 -12 1142 264 123 35 chr9 107531193 107531274 -34740170 - MER115 DNA AcHobo -610 83 11 249 108 0 0 chr9 107531391 107531428 -34740016 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 205 152 0 0 chr9 107531429 107531462 -34739982 + C-rich Low_complexity Low_complexity 4 36 0 1989 162 0 9 chr9 107531467 107531782 -34739662 - AluJb SINE Alu 0 312 1 1549 107 144 23 chr9 107532026 107532289 -34739155 - AluSq SINE Alu -18 295 1 2187 68 34 0 chr9 107532750 107533016 -34738428 + AluY SINE Alu 1 275 -36 25 0 0 0 chr9 107533585 107533610 -34737834 + AT_rich Low_complexity Low_complexity 1 25 0 2269 121 0 0 chr9 107533652 107533957 -34737487 + AluSx SINE Alu 5 309 -3 185 0 40 0 chr9 107534019 107534044 -34737400 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2163 112 10 13 chr9 107534344 107534647 -34736797 + AluSx SINE Alu 1 302 -10 366 209 194 23 chr9 107535357 107535411 -34736033 - MER63A DNA MER1_type -1481 207 164 180 0 0 0 chr9 107535411 107535431 -34736013 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 366 209 194 23 chr9 107535431 107535505 -34735939 - MER63A DNA MER1_type -1524 164 57 2801 128 40 17 chr9 107535505 107536096 -34735348 - MER4B LTR ERV1 0 766 1 21 0 0 0 chr9 107536383 107536404 -34735040 + AT_rich Low_complexity Low_complexity 1 21 0 2058 135 0 3 chr9 107536623 107536919 -34734525 - AluSx SINE Alu -17 295 1 2167 113 0 0 chr9 107538394 107538700 -34732744 + AluSg SINE Alu 1 306 0 1139 265 71 23 chr9 107538730 107539164 -34732280 - LTR16A1 LTR ERVL -2 455 1 1768 144 55 20 chr9 107539431 107539723 -34731721 + AluJb SINE Alu 1 302 -10 2498 61 0 0 chr9 107540081 107540376 -34731068 - AluY SINE Alu -16 295 1 841 135 0 0 chr9 107540377 107540525 -34730919 - L1PBa LINE L1 -4112 2751 2604 219 103 0 0 chr9 107541186 107541225 -34730219 + (A)n Simple_repeat Simple_repeat 1 39 0 2293 73 10 0 chr9 107541666 107541955 -34729489 + AluSx SINE Alu 1 292 -20 660 225 51 51 chr9 107541955 107542231 -34729213 - MER113 DNA MER1_type? -150 371 96 207 286 117 0 chr9 107542674 107542751 -34728693 + L2 LINE L2 3187 3272 0 2176 124 0 7 chr9 107543521 107543819 -34727625 + AluSg SINE Alu 1 296 -14 319 282 94 8 chr9 107544241 107544358 -34727086 - MIR3 SINE MIR -11 197 71 2082 90 56 0 chr9 107544708 107545000 -34726444 - AluSg SINE Alu 0 307 1 383 296 32 8 chr9 107545098 107545223 -34726221 - MIR SINE MIR -115 147 20 417 308 118 5 chr9 107546612 107546807 -34724637 + MIR SINE MIR 35 251 -11 2070 128 0 17 chr9 107546913 107547209 -34724235 - AluSx SINE Alu -21 291 1 511 238 85 118 chr9 107547940 107547974 -34723470 + L1ME4a LINE L1 5571 5605 -516 2250 103 3 0 chr9 107547974 107548265 -34723179 + AluSp SINE Alu 3 294 -19 511 238 85 118 chr9 107548265 107548771 -34722673 + L1ME4a LINE L1 5605 6093 -28 288 0 0 0 chr9 107548776 107548789 -34722655 + (CA)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr9 107548789 107548821 -34722623 + (CA)n Simple_repeat Simple_repeat 2 33 0 2193 104 0 23 chr9 107548853 107549152 -34722292 - AluSx SINE Alu -20 292 1 632 234 11 27 chr9 107549521 107549709 -34721735 + MIR SINE MIR 78 262 0 207 0 0 0 chr9 107549716 107549739 -34721705 + (CAT)n Simple_repeat Simple_repeat 2 24 0 26 30 0 0 chr9 107549825 107549858 -34721586 + AT_rich Low_complexity Low_complexity 1 33 0 1689 167 0 14 chr9 107549931 107550207 -34721237 - AluJo SINE Alu -36 276 5 1700 147 62 7 chr9 107550396 107550669 -34720775 + AluSx SINE Alu 16 303 -9 1931 121 39 4 chr9 107550679 107550959 -34720485 + AluSg SINE Alu 17 306 -4 2416 93 0 3 chr9 107551886 107552199 -34719245 + AluSx SINE Alu 1 312 0 1707 162 41 48 chr9 107553775 107554089 -34717355 - AluJo SINE Alu 0 312 1 2228 90 19 29 chr9 107554273 107554583 -34716861 + AluSc SINE Alu 1 307 -2 571 314 61 7 chr9 107554777 107555057 -34716387 - MARNA DNA Mariner -31 555 261 1944 141 3 16 chr9 107555151 107555456 -34715988 - AluJb SINE Alu -11 301 1 207 0 0 0 chr9 107556096 107556119 -34715325 + (T)n Simple_repeat Simple_repeat 1 23 0 2122 130 0 0 chr9 107556178 107556477 -34714967 + AluSx SINE Alu 1 299 -13 201 317 233 0 chr9 107557220 107557340 -34714104 + L2 LINE L2 3125 3272 0 333 375 37 0 chr9 107557347 107557483 -34713961 + L2 LINE L2 3117 3257 -15 1970 141 14 3 chr9 107557922 107558205 -34713239 - AluSq SINE Alu -27 286 1 202 300 0 0 chr9 107558626 107558676 -34712768 + CT-rich Low_complexity Low_complexity 4 53 0 577 274 45 49 chr9 107558683 107558928 -34712516 - MIR SINE MIR -14 248 5 209 329 90 76 chr9 107558940 107559229 -34712215 - L2 LINE L2 -84 3188 2896 463 139 0 0 chr9 107559715 107559794 -34711650 - Alu SINE Alu -12 298 220 750 123 0 54 chr9 107559969 107559988 -34711456 - L1MC1 LINE L1 -1 6332 6314 2168 99 27 7 chr9 107559988 107560281 -34711163 + AluSq SINE Alu 1 299 -14 750 123 0 54 chr9 107560281 107560391 -34711053 - L1MC1 LINE L1 -19 6314 6210 676 309 76 68 chr9 107560454 107560606 -34710838 - L2 LINE L2 -4 3268 3119 2324 80 0 3 chr9 107560606 107560895 -34710549 + AluY SINE Alu 12 299 -12 676 309 76 68 chr9 107560895 107561322 -34710122 - L2 LINE L2 -153 3119 2694 226 109 65 0 chr9 107562343 107562389 -34709055 + L2 LINE L2 3265 3313 0 1401 199 0 19 chr9 107562407 107562712 -34708732 + AluJo SINE Alu 24 323 0 24 0 0 0 chr9 107562972 107562996 -34708448 + AT_rich Low_complexity Low_complexity 1 24 0 2312 113 0 0 chr9 107562999 107563309 -34708135 + AluSg SINE Alu 1 310 0 482 175 194 0 chr9 107564210 107564313 -34707131 + MLT1B LTR MaLR 268 390 0 307 305 19 0 chr9 107564335 107564440 -34707004 - MLT1J LTR MaLR -178 333 227 339 263 0 12 chr9 107564627 107564707 -34706737 - MLT1L LTR MaLR -536 79 1 1282 115 6 0 chr9 107564990 107565164 -34706280 + AluSg/x SINE Alu 120 294 -18 314 228 29 96 chr9 107565258 107565394 -34706050 + L1ME LINE L1 5670 5796 -366 311 243 199 22 chr9 107565549 107565685 -34705759 + MER5A DNA MER1_type 1 160 -29 1085 272 165 31 chr9 107565881 107566330 -34705114 - MLT1J LTR MaLR -2 509 1 413 240 30 0 chr9 107566458 107566558 -34704886 + MER5A DNA MER1_type 7 109 -80 2065 137 0 0 chr9 107567630 107567923 -34703521 + AluSx SINE Alu 1 293 -19 1661 61 0 38 chr9 107568314 107568526 -34702918 - AluY SINE Alu -107 204 1 34 55 0 0 chr9 107568559 107568614 -34702830 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr9 107568645 107568666 -34702778 + AT_rich Low_complexity Low_complexity 1 21 0 2417 87 0 10 chr9 107568680 107568989 -34702455 - AluSq SINE Alu -7 306 1 206 278 0 0 chr9 107569439 107569493 -34701951 - L2 LINE L2 -9 3263 3210 235 293 37 0 chr9 107569588 107569670 -34701774 - L2 LINE L2 -174 3098 3014 2420 80 3 10 chr9 107569685 107569999 -34701445 - AluSx SINE Alu 0 312 1 860 273 11 23 chr9 107570393 107570586 -34700858 + MIR SINE MIR 6 200 -62 5796 117 77 68 chr9 107570586 107570853 -34700591 - Tigger3b DNA MER2_type -1798 1230 967 2333 98 0 0 chr9 107570853 107571148 -34700296 - AluY SINE Alu -16 295 1 5796 117 77 68 chr9 107571148 107571416 -34700028 - Tigger3b DNA MER2_type -2061 967 703 2049 84 8 4 chr9 107571416 107571678 -34699766 - AluSq SINE Alu -50 263 1 1580 196 39 3 chr9 107571678 107571962 -34699482 - AluJo SINE Alu -14 298 5 5796 117 77 68 chr9 107571678 107572035 -34699409 - Tigger3b DNA MER2_type -2325 703 351 2049 140 0 0 chr9 107572035 107572343 -34699101 + AluSx SINE Alu 1 308 0 5796 117 77 68 chr9 107572343 107572761 -34698683 - Tigger3b DNA MER2_type -2677 351 186 1990 134 3 13 chr9 107572761 107573060 -34698384 - AluJo SINE Alu -16 296 1 5796 117 77 68 chr9 107573060 107573248 -34698196 - Tigger3b DNA MER2_type -2842 186 1 860 273 11 23 chr9 107573248 107573314 -34698130 + MIR SINE MIR 200 262 0 333 71 0 18 chr9 107573514 107573570 -34697874 + AluSc SINE Alu 245 299 0 1232 113 6 6 chr9 107573575 107573743 -34697701 + AluSg/x SINE Alu 129 296 -16 1241 110 91 135 chr9 107574251 107574570 -34696874 - AluSx SINE Alu -7 305 1 360 0 0 0 chr9 107575013 107575053 -34696391 + (TG)n Simple_repeat Simple_repeat 1 40 0 240 288 0 0 chr9 107575653 107575726 -34695718 + (TA)n Simple_repeat Simple_repeat 2 74 0 2102 139 0 0 chr9 107575805 107576108 -34695336 - AluSx SINE Alu -8 304 2 311 295 67 0 chr9 107576131 107576236 -34695208 - L2 LINE L2 -2 3311 3200 2366 73 0 7 chr9 107576535 107576844 -34694600 + AluSg SINE Alu 1 310 0 206 340 53 0 chr9 107577128 107577222 -34694222 + L2 LINE L2 3134 3232 -40 308 354 140 23 chr9 107577591 107577933 -34693511 - L3 LINE CR1 -380 1197 816 2251 98 0 0 chr9 107577938 107578224 -34693220 + AluSx SINE Alu 11 296 -16 1882 138 25 11 chr9 107578317 107578599 -34692845 + AluSx SINE Alu 2 287 -25 185 88 29 0 chr9 107578599 107578610 -34692834 + (TA)n Simple_repeat Simple_repeat 1 10 -25 2209 109 3 7 chr9 107578610 107578903 -34692541 + AluSq SINE Alu 1 292 -21 185 88 29 0 chr9 107578903 107578925 -34692519 + (TA)n Simple_repeat Simple_repeat 10 35 0 22 35 0 0 chr9 107579171 107579200 -34692244 + AT_rich Low_complexity Low_complexity 1 29 0 2156 123 0 13 chr9 107579799 107580101 -34691343 - AluSq SINE Alu -15 298 1 916 247 31 15 chr9 107580821 107581080 -34690364 + L1ME1 LINE L1 5902 6164 -2 923 46 0 8 chr9 107582116 107582246 -34689198 + (TAGA)n Simple_repeat Simple_repeat 2 130 0 270 0 0 0 chr9 107582532 107582562 -34688882 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 525 174 14 14 chr9 107582567 107582705 -34688739 + GA-rich Low_complexity Low_complexity 3 140 0 2068 117 0 3 chr9 107583878 107584209 -34687235 + AluSx SINE Alu 1 330 0 2266 118 0 0 chr9 107585096 107585402 -34686042 + AluSx SINE Alu 3 308 -4 480 217 72 72 chr9 107585405 107585612 -34685832 + L1MEc LINE L1 1759 1965 -4431 2264 103 3 19 chr9 107586321 107586632 -34684812 + AluSp SINE Alu 1 306 -7 2381 87 0 3 chr9 107587018 107587317 -34684127 + AluSx SINE Alu 1 298 -14 391 281 101 25 chr9 107587330 107587600 -34683844 - L1ME LINE L1 -350 5812 5502 424 289 65 90 chr9 107587986 107588079 -34683365 + Charlie8 DNA MER1_type 6 100 -241 2180 118 26 0 chr9 107588079 107588384 -34683060 + AluSp SINE Alu 1 313 0 424 289 65 90 chr9 107588384 107588567 -34682877 + Charlie8 DNA MER1_type 100 275 -66 2304 113 0 0 chr9 107588599 107588908 -34682536 - AluSg SINE Alu -1 309 1 2459 92 0 0 chr9 107589190 107589494 -34681950 - AluSq SINE Alu -9 304 1 2330 81 9 31 chr9 107590343 107590663 -34680781 - AluSp SINE Alu 0 313 1 2200 118 10 0 chr9 107590663 107590969 -34680475 - AluSx SINE Alu -3 309 1 586 236 138 89 chr9 107591275 107591598 -34679846 - L1ME4a LINE L1 -19 6102 5796 761 168 0 8 chr9 107591598 107591729 -34679715 - FLAM_A SINE Alu -3 130 1 586 236 138 89 chr9 107591729 107591821 -34679623 - L1ME4a LINE L1 -325 5796 5710 2438 91 3 0 chr9 107591821 107592130 -34679314 - AluSx SINE Alu -2 310 1 586 236 138 89 chr9 107592130 107592272 -34679172 - L1ME4a LINE L1 -411 5710 5517 2993 212 12 39 chr9 107592299 107593017 -34678427 - L1ME1 LINE L1 -29 6137 5439 1191 139 6 0 chr9 107593169 107593342 -34678102 + AluSg/x SINE Alu 118 291 -19 917 175 10 53 chr9 107593344 107593550 -34677894 + MER51C LTR ERV1 444 640 0 342 221 97 0 chr9 107593735 107593848 -34677596 - MIR SINE MIR -75 187 64 373 358 99 13 chr9 107594316 107594548 -34676896 + MIR SINE MIR 11 262 0 329 276 26 9 chr9 107595602 107595718 -34675726 - MIR SINE MIR -46 216 99 213 39 0 0 chr9 107595811 107595837 -34675607 + (T)n Simple_repeat Simple_repeat 1 26 0 435 257 160 0 chr9 107596514 107596689 -34674755 + MIR SINE MIR 45 247 -15 692 130 0 0 chr9 107597096 107597204 -34674240 - AluSp/q SINE Alu 0 313 206 2012 188 11 3 chr9 107597329 107597690 -34673754 - MLT1A1 LTR MaLR 0 365 2 1532 227 16 0 chr9 107597812 107598116 -34673328 + AluJb SINE Alu 1 309 -3 2097 137 0 7 chr9 107598268 107598567 -34672877 - AluSx SINE Alu -15 297 1 426 322 24 39 chr9 107598582 107598787 -34672657 - MIR SINE MIR -59 203 2 307 384 28 0 chr9 107598951 107599128 -34672316 - L3 LINE CR1 -486 1091 910 346 296 35 0 chr9 107599248 107599363 -34672081 + MIR SINE MIR 136 254 -8 539 289 10 46 chr9 107599493 107599529 -34671915 + MIR SINE MIR 21 57 -205 2164 115 0 11 chr9 107599529 107599847 -34671597 - AluSx SINE Alu 0 315 1 539 289 10 46 chr9 107599847 107600003 -34671441 + MIR SINE MIR 57 207 -55 2352 96 0 0 chr9 107600423 107600724 -34670720 - AluSx SINE Alu -11 301 1 311 281 123 0 chr9 107600930 107601044 -34670400 - MIR3 SINE MIR -39 169 42 25 31 0 0 chr9 107601313 107601345 -34670099 + GC_rich Low_complexity Low_complexity 1 32 0 29 60 0 0 chr9 107601838 107601888 -34669556 + GC_rich Low_complexity Low_complexity 1 50 0 246 274 71 0 chr9 107602221 107602336 -34669108 - MIR SINE MIR -60 148 68 370 254 9 36 chr9 107602414 107602524 -34668920 - MIR SINE MIR -50 212 106 1321 206 59 19 chr9 107603093 107603413 -34668031 - MLT1A2 LTR MaLR -41 333 1 360 277 54 27 chr9 107604015 107604199 -34667245 - MIR SINE MIR -18 244 56 275 270 0 0 chr9 107604425 107604488 -34666956 + L2 LINE L2 3251 3313 0 2288 106 0 7 chr9 107604613 107604915 -34666529 - AluSg SINE Alu -10 300 1 1126 74 7 0 chr9 107605293 107605428 -34666016 + AluSq/x SINE Alu 2 137 -175 2093 103 35 3 chr9 107605428 107605710 -34665734 + AluSg SINE Alu 1 291 -19 234 152 0 0 chr9 107605716 107605762 -34665682 + L1MC4 LINE L1 6658 6703 -1339 321 292 0 0 chr9 107605769 107605858 -34665586 + L1MC4 LINE L1 6615 6703 -1339 1007 138 0 0 chr9 107605877 107606022 -34665422 + AluSp SINE Alu 136 280 -33 1581 96 22 44 chr9 107606664 107606745 -34664699 + L1MA2 LINE L1 6041 6122 -182 2052 111 9 78 chr9 107606745 107607078 -34664366 - AluSg SINE Alu 0 310 1 2321 102 3 3 chr9 107607078 107607383 -34664061 - AluSx SINE Alu -7 305 1 1581 96 22 44 chr9 107607383 107607570 -34663874 + L1MA2 LINE L1 6120 6304 0 252 0 0 0 chr9 107607714 107607742 -34663702 + (A)n Simple_repeat Simple_repeat 1 28 0 1214 91 0 24 chr9 107608279 107608444 -34663000 - AluSq SINE Alu -152 161 1 2181 109 3 0 chr9 107608549 107608833 -34662611 - AluSg SINE Alu -25 285 1 325 269 44 28 chr9 107609018 107609200 -34662244 - L1MC4a LINE L1 -1802 6006 5822 642 237 74 0 chr9 107609200 107609366 -34662078 - AluJb SINE Alu 0 315 140 709 242 17 69 chr9 107609367 107609508 -34661936 - L1MC4a LINE L1 -1978 5830 5703 2192 109 0 3 chr9 107609508 107609821 -34661623 + AluSx SINE Alu 2 313 0 709 242 17 69 chr9 107609821 107609909 -34661535 - L1MC4a LINE L1 -2105 5703 5612 2143 94 0 4 chr9 107610001 107610277 -34661167 + AluSg SINE Alu 1 275 -35 24 0 0 0 chr9 107610324 107610348 -34661096 + AT_rich Low_complexity Low_complexity 1 24 0 2144 119 0 0 chr9 107610580 107610888 -34660556 + AluSx SINE Alu 1 308 0 1126 267 71 23 chr9 107610918 107611352 -34660092 - LTR16A1 LTR ERVL -2 455 1 1768 144 55 20 chr9 107611619 107611911 -34659533 + AluJb SINE Alu 1 302 -10 2211 114 0 10 chr9 107612269 107612568 -34658876 - AluSx SINE Alu -16 296 1 305 277 170 7 chr9 107613449 107613590 -34657854 - MIR SINE MIR -55 207 44 252 0 0 0 chr9 107613727 107613755 -34657689 + (T)n Simple_repeat Simple_repeat 1 28 0 1271 113 25 106 chr9 107613903 107614086 -34657358 - L1MA2 LINE L1 -4 6300 6104 2305 105 3 3 chr9 107614086 107614391 -34657053 + AluSx SINE Alu 1 305 -7 1878 116 9 88 chr9 107614391 107614709 -34656735 + AluSg SINE Alu 1 293 -17 1271 113 25 106 chr9 107614709 107614807 -34656637 - L1MA2 LINE L1 -198 6106 6041 1051 124 0 0 chr9 107615449 107615594 -34655850 - AluSq SINE Alu -33 280 136 321 292 0 0 chr9 107615613 107615702 -34655742 - L1MC4 LINE L1 -1339 6703 6615 234 152 0 0 chr9 107615709 107615755 -34655689 - L1MC4 LINE L1 -1339 6703 6658 2093 103 35 3 chr9 107615761 107616043 -34655401 - AluSg SINE Alu -19 291 1 1126 74 7 0 chr9 107616043 107616178 -34655266 - AluSq SINE Alu -176 137 2 879 62 0 35 chr9 107616408 107616521 -34654923 - AluSq/x SINE Alu -199 114 6 1378 179 43 43 chr9 107616525 107616685 -34654759 - AluJb SINE Alu -6 306 144 2271 110 0 0 chr9 107616685 107616984 -34654460 - AluSx SINE Alu -13 299 1 1378 179 43 43 chr9 107616984 107617125 -34654319 - AluJb SINE Alu -167 145 5 771 274 56 14 chr9 107617147 107617435 -34654009 - L1ME LINE L1 -298 5823 5524 299 306 50 8 chr9 107618181 107618302 -34653142 + MIR SINE MIR 26 151 -57 620 258 26 0 chr9 107618495 107618646 -34652798 - MIR SINE MIR -79 183 29 41 21 0 0 chr9 107618719 107618767 -34652677 + AT_rich Low_complexity Low_complexity 1 48 0 191 264 0 38 chr9 107618864 107618917 -34652527 + MIR3 SINE MIR 150 200 -8 1848 111 0 4 chr9 107619115 107619359 -34652085 + AluSx SINE Alu 1 243 -69 282 238 63 0 chr9 107619596 107619659 -34651785 + L2 LINE L2 3205 3271 -1 353 345 20 72 chr9 107620497 107620746 -34650698 - L2 LINE L2 -9 3263 3028 501 279 40 55 chr9 107620775 107620976 -34650468 - MIR SINE MIR -18 244 47 252 257 7 42 chr9 107621144 107621288 -34650156 + (TA)n Simple_repeat Simple_repeat 2 140 0 2231 113 0 0 chr9 107621330 107621631 -34649813 - AluSx SINE Alu -11 301 1 1267 195 109 73 chr9 107622004 107622470 -34648974 - L1MC4 LINE L1 0 8042 7560 * 10648 166 24 90 chr9 107622465 107623580 -34647864 - L1PA16 LINE L1 -5 6161 4973 2278 92 0 10 chr9 107623580 107623874 -34647570 - AluSq SINE Alu -22 291 1 10648 166 24 90 chr9 107623874 107624712 -34646732 - L1PA16 LINE L1 -1193 4973 4081 2264 87 7 7 chr9 107624712 107625011 -34646433 + AluSq SINE Alu 1 299 -14 10648 166 24 90 chr9 107625011 107625293 -34646151 - L1PA16 LINE L1 -2085 4081 3782 281 86 0 0 chr9 107625293 107625328 -34646116 - U2 snRNA snRNA -153 35 1 10648 166 24 90 chr9 107625328 107625897 -34645547 - L1PA16 LINE L1 -2384 3782 3177 1954 132 0 13 chr9 107625897 107626201 -34645243 - AluSc SINE Alu -9 300 1 10648 166 24 90 chr9 107626201 107626864 -34644580 - L1PA16 LINE L1 -2989 3177 2971 2283 99 3 3 chr9 107626864 107627168 -34644276 - AluSg SINE Alu -6 304 1 10648 166 24 90 chr9 107627168 107627686 -34643758 - L1PA16 LINE L1 -3195 2971 2420 4160 214 116 18 chr9 107627687 107628797 -34642647 - L1MC4 LINE L1 -470 7572 6354 229 250 0 0 chr9 107628820 107628868 -34642576 - L1ME3 LINE L1 -21 6141 6094 306 253 147 7 chr9 107628899 107629049 -34642395 - L1ME4a LINE L1 -259 5862 5692 768 215 68 91 chr9 107629210 107629517 -34641927 - MLT1B LTR MaLR 0 390 91 21 0 0 0 chr9 107629560 107629581 -34641863 + AT_rich Low_complexity Low_complexity 1 21 0 1015 252 52 26 chr9 107629601 107629907 -34641537 - MER46C DNA MER2_type -7 331 18 2577 163 101 19 chr9 107630531 107630594 -34640850 - MLT1D LTR MaLR 0 505 449 2178 113 13 0 chr9 107630594 107630896 -34640548 + AluSp SINE Alu 1 306 -7 2577 163 101 19 chr9 107630896 107631299 -34640145 - MLT1D LTR MaLR -56 449 1 228 158 0 0 chr9 107631665 107631703 -34639741 + L1MB1 LINE L1 5990 6027 -141 259 284 27 0 chr9 107631704 107631778 -34639666 - MIR SINE MIR -113 149 74 2253 121 0 10 chr9 107631813 107632126 -34639318 + AluSx SINE Alu 1 310 -2 41 36 0 0 chr9 107632167 107632222 -34639222 + AT_rich Low_complexity Low_complexity 1 55 0 1047 216 19 19 chr9 107632424 107632688 -34638756 - MER33 DNA MER1_type -5 319 56 1145 97 39 0 chr9 107632688 107632843 -34638601 - AluSc SINE Alu -1 308 148 234 217 0 22 chr9 107632843 107632889 -34638555 - MER33 DNA MER1_type -268 56 12 2137 113 7 3 chr9 107633111 107633404 -34638040 + AluSq SINE Alu 1 294 -19 2314 92 3 0 chr9 107633404 107633699 -34637745 + AluSg SINE Alu 1 296 -14 4050 111 13 2 chr9 107633700 107634252 -34637192 + L1PA16 LINE L1 5607 6164 -2 1491 133 90 25 chr9 107634440 107634718 -34636726 + L1MB1 LINE L1 5851 6146 -22 262 236 194 61 chr9 107635128 107635293 -34636151 + MIR SINE MIR 65 251 -11 1174 254 58 14 chr9 107635500 107635847 -34635597 + L1MC/D LINE L1 5417 5778 -2030 1915 129 4 4 chr9 107635849 107636207 -34635237 - AluSx SINE Alu 0 364 7 1949 94 0 0 chr9 107636308 107636552 -34634892 - AluSq SINE Alu -69 244 1 1499 180 91 80 chr9 107636976 107637403 -34634041 + MSTB2 LTR MaLR 24 455 -2 776 281 143 36 chr9 107637444 107637886 -34633558 + HAL1 LINE L1 594 1082 -1425 1341 235 80 78 chr9 107637925 107638466 -34632978 - MER68 LTR ERV1 -18 544 3 2511 271 102 41 chr9 107638470 107639777 -34631667 + HAL1 LINE L1 1089 2474 -33 36 0 0 0 chr9 107639777 107639813 -34631631 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr9 107639900 107639923 -34631521 + AT_rich Low_complexity Low_complexity 1 23 0 427 278 107 11 chr9 107640318 107640588 -34630856 - L1MCa LINE L1 -5127 1814 1519 1483 200 19 28 chr9 107640596 107640921 -34630523 - L1MCa LINE L1 -4999 1424 1103 226 290 42 112 chr9 107641005 107641219 -34630225 - HAL1 LINE L1 -2298 209 11 2037 134 0 0 chr9 107641294 107641611 -34629833 - AluSx SINE Alu 0 317 1 21 36 0 0 chr9 107641613 107641641 -34629803 + AT_rich Low_complexity Low_complexity 1 28 0 222 118 0 0 chr9 107641816 107641850 -34629594 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 26 74 0 0 chr9 107642190 107642244 -34629200 + AT_rich Low_complexity Low_complexity 1 54 0 1922 181 7 0 chr9 107642244 107642548 -34628896 + AluSx SINE Alu 1 306 -6 549 266 91 52 chr9 107642763 107642904 -34628540 - L1ME4a LINE L1 -77 6044 5910 222 37 0 0 chr9 107642904 107642931 -34628513 + (TA)n Simple_repeat Simple_repeat 1 27 0 2251 111 3 0 chr9 107642932 107643230 -34628214 - AluSq SINE Alu -14 299 1 549 266 91 52 chr9 107643230 107643450 -34627994 - L1ME4a LINE L1 -210 5911 5667 526 305 87 42 chr9 107643525 107644052 -34627392 - L1ME4a LINE L1 -743 5403 4969 1454 181 16 73 chr9 107644057 107644254 -34627190 - MLT2D LTR ERVL -7 457 250 1769 143 32 4 chr9 107644254 107644533 -34626911 + AluJb SINE Alu 14 300 -12 1454 181 16 73 chr9 107644533 107644846 -34626598 - MLT2D LTR ERVL -214 250 1 2146 108 0 0 chr9 107646132 107646441 -34625003 + AluSx SINE Alu 4 312 0 182 128 170 64 chr9 107646846 107646893 -34624551 - L2 LINE L2 0 3272 3221 1022 193 0 6 chr9 107647140 107647314 -34624130 - AluJb SINE Alu -6 306 132 1676 184 19 13 chr9 107647314 107647623 -34623821 - AluJb SINE Alu -1 311 1 247 289 46 92 chr9 107647629 107647847 -34623597 - L2 LINE L2 -255 3017 2810 848 335 77 29 chr9 107648036 107648454 -34622990 - L3 LINE CR1 -923 654 217 304 330 11 0 chr9 107649175 107649266 -34622178 + MIR3 SINE MIR 92 183 -25 325 346 62 47 chr9 107649301 107649512 -34621932 - MIR SINE MIR 0 262 49 1331 162 29 0 chr9 107649519 107649729 -34621715 + MER20 DNA MER1_type 1 216 -3 2270 102 0 3 chr9 107649971 107650274 -34621170 - AluSc SINE Alu -7 302 1 2245 126 3 3 chr9 107650499 107650809 -34620635 + AluSx SINE Alu 1 310 -2 1897 127 22 4 chr9 107650831 107651138 -34620306 + AluSx SINE Alu 1 312 0 762 192 192 27 chr9 107651236 107651460 -34619984 - MLT1K LTR MaLR -170 418 158 2222 99 0 62 chr9 107651539 107651863 -34619581 + AluSq SINE Alu 1 304 -9 2352 90 0 0 chr9 107652596 107652885 -34618559 + AluSq SINE Alu 1 289 -24 307 232 41 54 chr9 107652933 107653064 -34618380 + L1ME LINE L1 5568 5694 -427 22 88 0 0 chr9 107653080 107653137 -34618307 + AT_rich Low_complexity Low_complexity 1 57 0 284 211 11 111 chr9 107653198 107653288 -34618156 - MIR SINE MIR -67 195 115 26 0 0 0 chr9 107653388 107653414 -34618030 + AT_rich Low_complexity Low_complexity 1 26 0 244 289 181 0 chr9 107653468 107653634 -34617810 + L1ME4a LINE L1 5924 6119 -2 736 339 79 30 chr9 107654354 107655055 -34616389 + L2 LINE L2 2577 3313 0 290 316 164 0 chr9 107655059 107655211 -34616233 + MIR SINE MIR 66 242 -20 343 212 76 42 chr9 107655385 107655503 -34615941 + L1ME LINE L1 5685 5806 -315 1211 104 12 0 chr9 107655541 107655705 -34615739 + AluSp SINE Alu 1 166 -147 416 284 75 22 chr9 107655827 107655961 -34615483 + MIR3 SINE MIR 34 174 -34 2401 99 0 0 chr9 107656166 107656468 -34614976 - AluSx SINE Alu -10 302 1 2211 111 0 25 chr9 107656661 107656976 -34614468 - AluSx SINE Alu -5 307 1 1720 154 37 0 chr9 107657008 107657316 -34614128 - AluSx SINE Alu 0 318 1 228 213 32 138 chr9 107657567 107657661 -34613783 + L2 LINE L2 3186 3269 -3 2039 116 32 0 chr9 107657813 107658097 -34613347 - AluSx SINE Alu -19 293 1 1237 112 43 32 chr9 107658528 107658685 -34612759 - AluSg/x SINE Alu -15 297 136 2177 108 10 3 chr9 107658685 107658991 -34612453 - AluSc SINE Alu -1 308 1 1237 112 43 32 chr9 107658991 107659021 -34612423 - AluSg/x SINE Alu -176 136 108 2350 103 3 0 chr9 107659141 107659453 -34611991 - AluSp SINE Alu 0 313 1 295 265 24 24 chr9 107659500 107659583 -34611861 + MIR3 SINE MIR 99 181 -27 461 135 0 34 chr9 107659589 107659678 -34611766 - L1MB8 LINE L1 0 6178 6093 762 150 41 14 chr9 107659712 107659859 -34611585 - L1MB4 LINE L1 -17 6163 6013 335 315 174 0 chr9 107660645 107660794 -34610650 + L3 LINE CR1 1395 1569 -8 351 317 167 18 chr9 107660803 107661030 -34610414 + MIR SINE MIR 2 262 0 208 296 78 78 chr9 107661044 107661159 -34610285 + MIR SINE MIR 19 134 -74 1860 156 23 7 chr9 107661818 107662125 -34609319 - AluSx SINE Alu 0 312 1 939 118 0 15 chr9 107662202 107662337 -34609107 + AluSq/x SINE Alu 1 133 -179 1602 106 0 0 chr9 107662340 107662547 -34608897 + AluSc SINE Alu 1 207 -102 365 295 21 0 chr9 107662683 107662778 -34608666 - MIR3 SINE MIR -30 178 82 2105 130 0 17 chr9 107662833 107662970 -34608474 + AluSq SINE Alu 1 139 -174 2246 108 7 0 chr9 107662970 107663275 -34608169 + AluSg SINE Alu 1 307 -3 2105 130 0 17 chr9 107663275 107663438 -34608006 + AluSq SINE Alu 139 296 -17 603 294 71 62 chr9 107663592 107663960 -34607484 - LTR67 LTR ERVL -153 404 34 336 354 93 44 chr9 107664048 107664675 -34606769 + L2 LINE L2 2414 3082 -190 2324 93 7 3 chr9 107665012 107665313 -34606131 - AluSp SINE Alu -11 302 1 345 250 83 42 chr9 107665526 107665646 -34605798 + L2 LINE L2 3189 3313 0 321 235 34 42 chr9 107665767 107665886 -34605558 - L2 LINE L2 -232 3081 2964 3630 129 5 64 chr9 107666263 107666728 -34604716 + LTR26 LTR ERV1 10 430 -173 2084 141 0 0 chr9 107666728 107667025 -34604419 + AluSx SINE Alu 1 297 -15 3630 129 5 64 chr9 107667025 107667188 -34604256 + LTR26 LTR ERV1 430 601 -2 450 313 28 39 chr9 107667215 107667394 -34604050 + HUERS-P1 LTR ERV1 25 201 -6062 657 241 55 72 chr9 107667555 107667972 -34603472 + HUERS-P1 LTR ERV1 552 907 -5039 384 65 0 0 chr9 107668050 107668096 -34603348 + LTR57-int LTR ERVL 303 348 -4995 1342 111 0 0 chr9 107668197 107668405 -34603039 + AluSg/x SINE Alu 102 309 0 1232 169 42 19 chr9 107668407 107668668 -34602776 - MER4-int LTR ERV1 -2604 3994 3728 1313 167 30 64 chr9 107668724 107669131 -34602313 - MER4-int LTR ERV1 -2614 4062 3643 1879 144 3 7 chr9 107669131 107669415 -34602029 - AluSx SINE Alu -29 283 1 1313 167 30 64 chr9 107669415 107669487 -34601957 - MER4-int LTR ERV1 -3033 3643 3570 1919 92 0 4 chr9 107669487 107669738 -34601706 - AluSx SINE Alu -8 304 55 1499 200 93 55 chr9 107669870 107669970 -34601474 - Charlie7 DNA MER1_type -452 2160 2065 2370 92 0 0 chr9 107669970 107670262 -34601182 - AluSc SINE Alu -17 292 1 2108 125 3 0 chr9 107670262 107670551 -34600893 - AluSx SINE Alu -22 290 1 1499 200 93 55 chr9 107670551 107670944 -34600500 - Charlie7 DNA MER1_type -546 2066 1647 691 200 0 0 chr9 107670945 107671055 -34600389 + FLAM_C SINE Alu 2 111 -32 1739 147 0 0 chr9 107671094 107671366 -34600078 - AluSg SINE Alu 0 310 39 250 236 0 28 chr9 107671466 107671538 -34599906 - L1ME LINE L1 -263 5858 5789 561 214 31 31 chr9 107671860 107672019 -34599425 - L1ME LINE L1 -314 5807 5649 256 297 98 65 chr9 107672514 107672832 -34598612 + MLT1J1 LTR MaLR 31 332 -77 2160 96 3 0 chr9 107672832 107673123 -34598321 - AluSg SINE Alu -18 292 1 209 355 0 16 chr9 107673194 107673256 -34598188 - MIR SINE MIR -186 76 16 1976 110 31 3 chr9 107673386 107673676 -34597768 + AluSg SINE Alu 1 298 -12 1788 100 4 4 chr9 107674391 107674642 -34596802 + AluSg SINE Alu 1 251 -59 545 158 58 33 chr9 107674768 107674888 -34596556 + MER49-int LTR ERV1 4054 4176 -2155 1999 101 0 57 chr9 107674925 107675241 -34596203 + AluSg SINE Alu 1 298 -12 1618 98 25 110 chr9 107675389 107675735 -34595709 + MER49-int LTR ERV1 3786 6136 -622 1411 174 34 50 chr9 107675732 107675822 -34595622 + MER49-int LTR ERV1 6441 6531 -570 * 2083 107 3 19 chr9 107675822 107676140 -34595304 - AluSp SINE Alu 0 313 1 1411 174 34 50 chr9 107676140 107676364 -34595080 + MER49-int LTR ERV1 6531 7097 -4 1347 136 16 37 chr9 107676367 107676609 -34594835 + MER49 LTR ERV1 1 237 -686 1839 145 0 26 chr9 107676718 107677022 -34594422 - AluSq SINE Alu -17 296 1 418 348 63 14 chr9 107677053 107677274 -34594170 + HUERS-P1 LTR ERV1 6026 6257 -6 1162 139 5 34 chr9 107677278 107677487 -34593957 + LTR26 LTR ERV1 3 205 -398 2199 137 24 90 chr9 107677657 107677802 -34593642 + LTR26 LTR ERV1 210 363 -240 2245 110 0 3 chr9 107677802 107678110 -34593334 - AluSx SINE Alu 0 312 6 2199 137 24 90 chr9 107678110 107678184 -34593260 + LTR26 LTR ERV1 363 440 -163 2100 136 0 0 chr9 107678184 107678494 -34592950 - AluSx SINE Alu -2 310 1 2199 137 24 90 chr9 107678494 107678695 -34592749 + LTR26 LTR ERV1 440 603 0 230 252 118 67 chr9 107679194 107679313 -34592131 - L2 LINE L2 -181 3091 2967 1621 116 82 4 chr9 107679397 107679665 -34591779 + AluSq SINE Alu 3 291 -22 2190 253 101 12 chr9 107679790 107680540 -34590904 - Charlie7 DNA MER1_type -1684 928 112 1986 128 0 0 chr9 107680621 107680926 -34590518 - AluSx SINE Alu 0 305 1 267 31 0 0 chr9 107681054 107681086 -34590358 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 260 68 0 chr9 107681173 107681246 -34590198 - L2 LINE L2 0 3272 3195 221 204 20 0 chr9 107682807 107682856 -34588588 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1238 174 13 153 chr9 107682875 107682924 -34588520 - MLT1A1 LTR MaLR 0 457 403 2231 98 0 3 chr9 107682924 107683221 -34588223 - AluSx SINE Alu -16 296 1 1238 174 13 153 chr9 107683221 107683243 -34588201 - MLT1A1 LTR MaLR -54 403 380 2036 121 16 3 chr9 107683243 107683548 -34587896 - AluSg SINE Alu -1 309 1 1238 174 13 153 chr9 107683548 107683912 -34587532 - MLT1A1 LTR MaLR -77 380 1 1902 136 34 0 chr9 107684010 107684304 -34587140 - AluSx SINE Alu -8 304 1 404 288 120 94 chr9 107684754 107685178 -34586266 + MLT1K LTR MaLR 147 581 -7 2272 113 3 0 chr9 107685179 107685515 -34585929 + AluSx SINE Alu 1 337 0 1845 148 6 25 chr9 107685984 107686302 -34585142 - AluSx SINE Alu 0 312 1 313 308 54 44 chr9 107686840 107687015 -34584429 + MIR SINE MIR 3 185 -59 2338 62 0 0 chr9 107687026 107687316 -34584128 + AluSc SINE Alu 1 290 -19 2536 43 0 0 chr9 107687316 107687620 -34583824 + AluY SINE Alu 1 304 -7 207 0 0 0 chr9 107688297 107688320 -34583124 + (CACCAT)n Simple_repeat Simple_repeat 1 23 0 298 274 0 14 chr9 107689160 107689233 -34582211 + MIR SINE MIR 89 160 -102 754 282 11 6 chr9 107689241 107689446 -34581998 + MIR SINE MIR 60 262 0 392 264 39 31 chr9 107689634 107689780 -34581664 - MIR SINE MIR -59 149 20 2141 95 14 0 chr9 107689928 107690224 -34581220 + AluSx SINE Alu 1 300 -12 428 209 84 4 chr9 107690624 107690767 -34580677 + MIR SINE MIR 75 229 -33 1218 202 101 60 chr9 107691179 107691275 -34580169 - MER63B DNA MER1_type -628 434 343 2236 95 0 0 chr9 107691275 107691571 -34579873 + AluSx SINE Alu 1 296 -16 1218 202 101 60 chr9 107691571 107691748 -34579696 - MER63B DNA MER1_type -719 343 175 2176 103 0 19 chr9 107691748 107692058 -34579386 + AluSg SINE Alu 1 304 -6 1218 202 101 60 chr9 107692058 107692199 -34579245 - MER63B DNA MER1_type -887 175 2 186 333 128 17 chr9 107692531 107692648 -34578796 - L2 LINE L2 -5 3267 3138 2139 113 7 0 chr9 107692729 107693030 -34578414 - AluSq SINE Alu -10 303 1 2167 117 0 0 chr9 107693067 107693366 -34578078 - AluSx SINE Alu -13 299 1 479 192 79 118 chr9 107693370 107693573 -34577871 + L2 LINE L2 3104 3298 -15 334 207 58 11 chr9 107693613 107693700 -34577744 + MIR SINE MIR 49 139 -123 194 229 0 0 chr9 107694672 107694707 -34576737 - MIR SINE MIR -76 186 152 22 0 0 0 chr9 107694723 107694745 -34576699 + AT_rich Low_complexity Low_complexity 1 22 0 1053 141 12 0 chr9 107694845 107695044 -34576400 + AluSq SINE Alu 113 313 0 1871 97 9 61 chr9 107695044 107695093 -34576351 + L1MB3 LINE L1 5872 5922 -261 1859 145 0 13 chr9 107695093 107695403 -34576041 - AluSx SINE Alu -1 311 6 1871 97 9 61 chr9 107695403 107695682 -34575762 + L1MB3 LINE L1 5922 6183 0 1021 240 28 23 chr9 107695847 107696054 -34575390 + MER58A DNA MER1_type 1 211 -2209 2274 109 0 0 chr9 107696054 107696366 -34575078 + AluSx SINE Alu 1 312 0 2226 100 0 3 chr9 107696375 107696675 -34574769 + AluSx SINE Alu 1 299 -13 1844 143 23 3 chr9 107697089 107697389 -34574055 - AluSx SINE Alu -6 306 1 271 243 58 10 chr9 107697397 107697500 -34573944 + L1ME4a LINE L1 6008 6115 -6 1941 127 0 3 chr9 107697835 107698134 -34573310 - AluSq SINE Alu -15 298 1 571 160 96 24 chr9 107698468 107698593 -34572851 - MER4A LTR ERV1 -491 173 40 2248 85 0 0 chr9 107698888 107699181 -34572263 + AluY SINE Alu 1 293 -18 217 244 0 0 chr9 107699452 107699497 -34571947 + CT-rich Low_complexity Low_complexity 2 46 0 1924 121 3 0 chr9 107699590 107699902 -34571542 - AluSg SINE Alu 0 313 1 358 310 16 8 chr9 107699942 107700071 -34571373 - HERV16 LTR ERVL -3956 1040 911 641 315 73 61 chr9 107700341 107700628 -34570816 - HERV16 LTR ERVL -4385 611 329 2185 100 0 0 chr9 107700628 107700918 -34570526 + AluSx SINE Alu 7 296 -16 641 315 73 61 chr9 107700918 107701234 -34570210 - HERV16 LTR ERVL -4667 329 1 3201 95 14 48 chr9 107701239 107701433 -34570011 + LTR8A LTR ERV1 1 200 -527 2115 99 3 3 chr9 107701433 107701727 -34569717 - AluSg SINE Alu -16 294 1 3201 95 14 48 chr9 107701727 107702194 -34569250 + LTR8A LTR ERV1 200 727 0 669 226 84 21 chr9 107702624 107702814 -34568630 - MER58C DNA MER1_type -5 210 9 328 247 99 71 chr9 107702829 107703011 -34568433 + L2 LINE L2 3023 3209 -104 2044 103 7 13 chr9 107703025 107703326 -34568118 - AluSx SINE Alu -12 300 2 3617 152 59 8 chr9 107703327 107703940 -34567504 - MER4D LTR ERV1 -259 644 1 2010 172 58 103 chr9 107703944 107704356 -34567088 - MER4A LTR ERV1 0 664 295 1861 142 0 0 chr9 107704356 107704638 -34566806 - AluSx SINE Alu -10 302 21 2010 172 58 103 chr9 107704638 107704921 -34566523 - MER4A LTR ERV1 -369 295 1 1258 117 14 45 chr9 107704921 107705214 -34566230 - LTR8A LTR ERV1 -86 641 262 1753 120 127 13 chr9 107705214 107705530 -34565914 + MER4B LTR ERV1 1 352 -258 17663 44 4 1 chr9 107705543 107708482 -34562962 - L1PA6 LINE L1 0 6154 3205 1471 111 0 5 chr9 107708486 107708693 -34562751 + AluSc SINE Alu 83 288 -21 317 310 23 0 chr9 107708693 107708780 -34562664 - L1MC4 LINE L1 -1340 6702 6614 310 330 44 0 chr9 107708711 107708802 -34562642 + L1MC4 LINE L1 6609 6703 -1339 * 200 238 95 32 chr9 107709227 107709290 -34562154 + MIR SINE MIR 12 78 -184 1074 254 71 64 chr9 107709644 107710163 -34561281 + MLT1G LTR MaLR 68 590 0 937 297 84 40 chr9 107710584 107711083 -34560361 - LTR33 LTR ERVL 0 521 1 2185 109 0 0 chr9 107711417 107711720 -34559724 + AluSq SINE Alu 3 305 -8 198 390 43 14 chr9 107712770 107712911 -34558533 - L2 LINE L2 -280 2992 2848 217 333 62 0 chr9 107713032 107713113 -34558331 - L2 LINE L2 -487 2827 2742 2169 100 0 13 chr9 107713115 107713426 -34558018 - AluSx SINE Alu -5 307 1 1063 179 25 112 chr9 107713802 107713872 -34557572 - L1MEc LINE L1 -3983 2413 2338 1623 153 3 43 chr9 107713872 107714173 -34557271 + AluJb SINE Alu 1 289 -23 1063 179 25 112 chr9 107714173 107714504 -34556940 - L1MEc LINE L1 -4058 2338 2047 303 252 67 74 chr9 107715214 107715349 -34556095 + MIR SINE MIR 49 140 -68 2096 97 0 48 chr9 107715456 107715765 -34555679 - AluSx SINE Alu -18 294 1 494 240 41 8 chr9 107715857 107715978 -34555466 + MIR SINE MIR 8 132 -130 233 284 82 82 chr9 107716022 107716205 -34555239 + MIR3 SINE MIR 19 201 -7 2136 107 3 0 chr9 107716207 107716506 -34554938 + AluSg SINE Alu 1 300 -10 233 333 214 0 chr9 107716607 107716766 -34554678 + MIR SINE MIR 57 249 -13 23 0 0 0 chr9 107716803 107716826 -34554618 + AT_rich Low_complexity Low_complexity 1 23 0 319 305 93 73 chr9 107716934 107717193 -34554251 + L2 LINE L2 2915 3178 -94 2203 89 10 10 chr9 107717227 107717530 -34553914 - AluSp SINE Alu -10 303 1 315 0 0 0 chr9 107717686 107717721 -34553723 + (CA)n Simple_repeat Simple_repeat 2 36 0 827 119 0 8 chr9 107717770 107717896 -34553548 + 7SK RNA RNA 1 125 -68 471 119 0 0 chr9 107717932 107717999 -34553445 + 7SK RNA RNA 121 187 -6 2051 125 0 3 chr9 107718368 107718665 -34552779 + AluSx SINE Alu 1 296 -16 435 259 27 9 chr9 107718691 107718803 -34552641 + MIR3 SINE MIR 72 185 -23 408 250 57 24 chr9 107718959 107719083 -34552361 + MIR SINE MIR 12 139 -123 246 307 40 0 chr9 107719737 107719838 -34551606 + MIR SINE MIR 158 262 0 2087 100 3 0 chr9 107719951 107720241 -34551203 - AluSc SINE Alu -18 291 1 30 27 0 0 chr9 107720385 107720422 -34551022 + AT_rich Low_complexity Low_complexity 1 37 0 288 56 0 0 chr9 107720489 107720525 -34550919 + AluSg/x SINE Alu 209 244 -58 21 0 0 0 chr9 107720730 107720751 -34550693 + AT_rich Low_complexity Low_complexity 1 21 0 971 220 110 64 chr9 107720943 107721010 -34550434 - MLT1B LTR MaLR 0 390 328 2373 73 0 0 chr9 107721010 107721312 -34550132 + AluY SINE Alu 1 302 -9 971 220 110 64 chr9 107721312 107721617 -34549827 - MLT1B LTR MaLR -62 328 1 397 298 53 23 chr9 107721631 107721762 -34549682 - L2 LINE L2 -2 3270 3136 2293 87 0 0 chr9 107721797 107722095 -34549349 + AluSx SINE Alu 1 298 -14 674 203 0 31 chr9 107722113 107722241 -34549203 + FLAM_A SINE Alu 1 124 -9 332 152 15 0 chr9 107722242 107722308 -34549136 + GA-rich Low_complexity Low_complexity 4 70 0 196 301 103 55 chr9 107722325 107722471 -34548973 - L2 LINE L2 -181 3091 2939 1916 84 87 14 chr9 107722497 107722783 -34548661 + AluSq SINE Alu 1 307 -6 807 120 60 0 chr9 107722797 107722930 -34548514 + AluSg/x SINE Alu 157 297 -12 236 316 0 13 chr9 107723985 107724064 -34547380 - L2 LINE L2 -5 3308 3231 374 291 34 34 chr9 107724389 107724537 -34546907 + MIR SINE MIR 57 204 -58 2120 106 0 32 chr9 107724800 107725111 -34546333 + AluSx SINE Alu 1 301 -11 2027 123 3 7 chr9 107725953 107726261 -34545183 - AluSx SINE Alu -5 307 1 2260 104 43 56 chr9 107727148 107727520 -34543924 - L1PB4 LINE L1 -5 6151 5783 224 91 23 0 chr9 107727520 107727564 -34543880 + (CA)n Simple_repeat Simple_repeat 2 46 0 2260 104 43 56 chr9 107727564 107727585 -34543859 - L1PB4 LINE L1 -373 5783 5763 24 0 0 0 chr9 107727707 107727731 -34543713 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 107727826 107727848 -34543596 + AT_rich Low_complexity Low_complexity 1 22 0 359 232 80 147 chr9 107728718 107728817 -34542627 + MIR SINE MIR 18 95 -167 2191 109 0 0 chr9 107728817 107729120 -34542324 - AluSq SINE Alu -10 303 1 359 232 80 147 chr9 107729120 107729244 -34542200 + MIR SINE MIR 95 226 -36 594 271 79 17 chr9 107729315 107729492 -34541952 + MIR3 SINE MIR 20 207 -1 398 279 198 12 chr9 107729482 107729654 -34541790 - MIR SINE MIR 0 262 59 * 576 227 55 161 chr9 107730305 107730371 -34541073 - MLT1H LTR MaLR 0 549 478 2215 116 0 0 chr9 107730371 107730682 -34540762 + AluSx SINE Alu 1 311 -1 576 227 55 161 chr9 107730682 107730851 -34540593 - MLT1H LTR MaLR -71 478 362 4053 97 34 11 chr9 107730851 107731418 -34540026 - LTR19B LTR ERV1 0 580 1 576 227 55 161 chr9 107731418 107731542 -34539902 - MLT1H LTR MaLR -187 362 227 982 207 149 30 chr9 107731555 107731918 -34539526 + L1ME LINE L1 4304 4709 -1437 241 196 62 52 chr9 107731931 107732028 -34539416 + L1ME LINE L1 5790 5887 -279 1300 128 31 0 chr9 107732035 107732259 -34539185 - AluSq SINE Alu 0 314 85 226 36 0 0 chr9 107732391 107732419 -34539025 - AluY SINE Alu -273 28 1 219 315 41 0 chr9 107732441 107732514 -34538930 + L3 LINE CR1 1500 1575 -2 189 239 196 0 chr9 107732567 107732613 -34538831 + MIR SINE MIR 94 148 -60 2102 111 13 7 chr9 107733165 107733471 -34537973 + AluSx SINE Alu 1 308 -4 1620 147 42 14 chr9 107734012 107734162 -34537282 - AluJb SINE Alu -18 294 150 441 0 0 0 chr9 107734162 107734211 -34537233 + (TA)n Simple_repeat Simple_repeat 1 49 0 1620 147 42 14 chr9 107734211 107734346 -34537098 - AluJb SINE Alu -162 150 1 594 241 9 0 chr9 107734472 107734584 -34536860 - MER81 DNA DNA -1 113 1 362 267 193 7 chr9 107734735 107734870 -34536574 + MER5A DNA MER1_type 9 168 -21 411 289 59 0 chr9 107735555 107735690 -34535754 + MIR SINE MIR 100 242 -20 2220 184 52 64 chr9 107735774 107736318 -34535126 + MLT1F LTR MaLR 1 537 -5 932 134 76 0 chr9 107736467 107736624 -34534820 + AluSg/x SINE Alu 137 305 -7 24 0 0 0 chr9 107736943 107736967 -34534477 + AT_rich Low_complexity Low_complexity 1 24 0 3294 116 31 54 chr9 107738162 107738192 -34533252 + L1MB3 LINE L1 5586 5615 -568 2041 169 9 20 chr9 107738192 107738542 -34532902 + MER7A DNA MER2_type 3 346 0 3294 116 31 54 chr9 107738542 107738763 -34532681 + L1MB3 LINE L1 5615 5840 -343 2139 120 0 0 chr9 107738763 107739062 -34532382 - AluSx SINE Alu -13 299 1 3294 116 31 54 chr9 107739062 107739419 -34532025 + L1MB3 LINE L1 5840 6181 -2 384 231 0 22 chr9 107739426 107739517 -34531927 - MIR SINE MIR -6 256 168 228 314 0 0 chr9 107739948 107740018 -34531426 - MLT2E LTR ERVL -6 622 553 1898 141 0 0 chr9 107740117 107740407 -34531037 - AluSq SINE Alu -23 290 1 239 304 120 24 chr9 107740529 107740654 -34530790 + L2 LINE L2 3100 3236 -36 954 191 5 0 chr9 107741259 107741448 -34529996 + AluJo SINE Alu 121 310 -2 587 296 34 29 chr9 107741922 107742128 -34529316 - MIR SINE MIR -54 208 2 346 58 0 0 chr9 107742488 107742540 -34528904 - AluSp/q SINE Alu -1 302 251 1799 138 29 10 chr9 107742541 107742853 -34528591 + L1MB7 LINE L1 5865 6182 -2 1020 282 47 3 chr9 107742875 107743215 -34528229 - LTR16A LTR ERVL -78 372 18 1052 173 0 0 chr9 107743410 107743589 -34527855 - AluSg/x SINE Alu 0 310 132 2181 116 3 0 chr9 107743589 107743899 -34527545 - AluSx SINE Alu -1 311 1 627 237 0 0 chr9 107744012 107744130 -34527314 + FLAM_A SINE Alu 4 121 -12 38 0 0 0 chr9 107744130 107744168 -34527276 + AT_rich Low_complexity Low_complexity 1 38 0 300 333 90 32 chr9 107744499 107744655 -34526789 - MIR SINE MIR -50 212 48 2080 110 7 0 chr9 107744665 107744956 -34526488 - AluSx SINE Alu -19 293 1 239 226 48 0 chr9 107745548 107745610 -34525834 + MER103 DNA DNA 13 77 -89 493 303 46 0 chr9 107745716 107745868 -34525576 - MER117 DNA MER1_type 0 197 39 229 273 0 0 chr9 107746033 107746077 -34525367 + L2 LINE L2 3193 3236 -36 2090 128 0 6 chr9 107746175 107746488 -34524956 - AluSx SINE Alu -1 311 1 552 296 39 34 chr9 107746607 107746731 -34524713 + MIR SINE MIR 47 174 -88 1927 149 63 14 chr9 107746731 107747079 -34524365 + MLT1A1 LTR MaLR 1 365 0 552 296 39 34 chr9 107747079 107747133 -34524311 + MIR SINE MIR 174 226 -36 2399 66 0 3 chr9 107747278 107747579 -34523865 + AluY SINE Alu 1 300 -11 592 234 16 0 chr9 107747965 107748089 -34523355 - MIR SINE MIR -125 137 12 357 281 82 12 chr9 107748107 107748278 -34523166 + L1MC4a LINE L1 5877 6059 -1749 325 263 125 0 chr9 107748280 107748360 -34523084 + L1MC4 LINE L1 6614 6703 -1339 200 235 0 39 chr9 107748455 107748506 -34522938 + L2 LINE L2 3038 3086 -186 1703 144 0 7 chr9 107748526 107748796 -34522648 - AluSx SINE Alu -44 268 1 313 299 56 9 chr9 107749107 107749214 -34522230 + L2 LINE L2 3143 3254 -18 479 174 56 146 chr9 107749877 107750019 -34521425 + L1MC5 LINE L1 7646 7799 -162 1432 174 52 4 chr9 107750019 107750289 -34521155 + AluJb SINE Alu 3 285 -27 479 174 56 146 chr9 107750289 107750300 -34521144 + L1MC5 LINE L1 7799 7809 -152 183 42 0 0 chr9 107750300 107750324 -34521120 + (CAT)n Simple_repeat Simple_repeat 2 25 0 479 174 56 146 chr9 107750324 107750491 -34520953 + L1MC5 LINE L1 7809 7938 -23 2428 80 0 0 chr9 107750493 107750804 -34520640 + AluSx SINE Alu 2 312 0 332 192 58 10 chr9 107750953 107751057 -34520387 + L1ME4a LINE L1 6010 6118 -3 301 167 61 15 chr9 107751067 107751133 -34520311 - L1MC4 LINE L1 -968 7074 7006 2143 118 0 3 chr9 107751925 107752238 -34519206 - AluSx SINE Alu 0 312 1 2012 115 0 3 chr9 107752541 107752878 -34518566 - AluSq SINE Alu 0 349 14 332 128 0 0 chr9 107752879 107752926 -34518518 - Alu SINE Alu -253 47 1 1088 172 6 6 chr9 107753279 107753459 -34517985 + MER58A DNA MER1_type 45 224 0 213 121 0 0 chr9 107753610 107753643 -34517801 + (A)n Simple_repeat Simple_repeat 1 33 0 559 264 31 57 chr9 107753644 107753692 -34517752 + MER63A DNA MER1_type 46 94 -1594 845 170 71 94 chr9 107753692 107753737 -34517707 - MER20 DNA MER1_type 0 219 175 1986 125 0 0 chr9 107753737 107754024 -34517420 - AluSc SINE Alu -22 287 1 845 170 71 94 chr9 107754024 107754202 -34517242 - MER20 DNA MER1_type -44 175 1 559 264 31 57 chr9 107754202 107754312 -34517132 + MER63A DNA MER1_type 94 200 -10 357 24 0 0 chr9 107755167 107755209 -34516235 + (CA)n Simple_repeat Simple_repeat 1 42 0 908 133 27 0 chr9 107755554 107755730 -34515714 + AluSq SINE Alu 130 309 0 2121 106 3 19 chr9 107755777 107756088 -34515356 + AluSg SINE Alu 1 306 -4 660 307 40 11 chr9 107756161 107756438 -34515006 + L1ME LINE L1 5386 5670 -451 2526 35 3 3 chr9 107757182 107757492 -34513952 - AluY SINE Alu -1 310 1 2237 89 0 3 chr9 107757818 107758111 -34513333 - AluSc SINE Alu -16 293 2 557 263 9 110 chr9 107758161 107758389 -34513055 - MIR SINE MIR -8 254 50 393 333 0 54 chr9 107758385 107758532 -34512912 - L2 LINE L2 0 3272 3134 * 566 236 90 100 chr9 107758766 107758948 -34512496 + L2 LINE L2 3002 3181 -132 1905 120 53 0 chr9 107758948 107759232 -34512212 - AluSx SINE Alu -13 299 1 566 236 90 100 chr9 107759232 107759359 -34512085 + L2 LINE L2 3181 3308 -5 868 229 0 27 chr9 107759898 107760086 -34511358 - MER63A DNA MER1_type -27 183 1 220 305 130 30 chr9 107760342 107760452 -34510992 - L2 LINE L2 0 3313 3187 723 232 0 93 chr9 107760452 107760689 -34510755 + MER58C DNA MER1_type 1 215 0 220 305 130 30 chr9 107760689 107760709 -34510735 - L2 LINE L2 -126 3187 3170 2147 85 30 7 chr9 107760757 107761052 -34510392 + AluSq SINE Alu 1 302 -11 1985 108 0 0 chr9 107761127 107761396 -34510048 + AluSq SINE Alu 1 269 -44 1012 280 4 0 chr9 107761606 107761863 -34509581 - MIR SINE MIR -3 259 2 277 218 90 0 chr9 107762123 107762201 -34509243 - L2 LINE L2 -13 3259 3175 1835 115 29 4 chr9 107762788 107763067 -34508377 - AluSx SINE Alu -19 293 8 2057 123 3 0 chr9 107763682 107763982 -34507462 - AluSp SINE Alu -12 301 1 307 342 62 47 chr9 107764026 107764301 -34507143 + MLT1K LTR MaLR 201 479 -109 4304 83 4 2 chr9 107764821 107765374 -34506070 + MER41A LTR ERV1 1 554 0 200 349 48 48 chr9 107765536 107765725 -34505719 - L2 LINE L2 -280 2992 2804 2029 84 18 0 chr9 107765891 107766175 -34505269 + AluY SINE Alu 18 306 -5 1090 108 32 0 chr9 107766312 107766470 -34504974 - AluSc SINE Alu -12 297 135 627 225 0 0 chr9 107766564 107766675 -34504769 + FLAM_C SINE Alu 1 111 -32 1572 117 4 17 chr9 107766679 107766919 -34504525 - AluSx SINE Alu -45 267 31 1625 166 57 10 chr9 107766919 107767220 -34504224 - MER51B LTR ERV1 0 377 63 594 135 86 98 chr9 107767212 107767375 -34504069 - MER51B LTR ERV1 -215 162 2 * 242 129 210 81 chr9 107767375 107767424 -34504020 - AluSp SINE Alu -120 183 127 965 168 0 12 chr9 107767425 107767586 -34503858 + AluJb SINE Alu 132 290 -22 1973 128 26 7 chr9 107768881 107769187 -34502257 + AluSx SINE Alu 1 312 0 304 235 47 35 chr9 107769235 107769320 -34502124 + MIR SINE MIR 11 96 -166 605 249 116 0 chr9 107769323 107769512 -34501932 + LTR33 LTR ERVL 10 220 -301 602 240 25 61 chr9 107769633 107769829 -34501615 + MLT1H LTR MaLR 23 211 -338 198 0 0 0 chr9 107769859 107769881 -34501563 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 249 284 71 39 chr9 107770113 107770268 -34501176 + LTR33 LTR ERVL 358 517 -4 365 223 61 36 chr9 107770466 107770608 -34500836 - L1MC5 LINE L1 0 8042 7793 2235 106 0 6 chr9 107771405 107771717 -34499727 - AluSg SINE Alu 0 310 1 1920 118 0 0 chr9 107772116 107772371 -34499073 - AluSx SINE Alu -57 255 1 452 277 71 67 chr9 107772582 107772849 -34498595 - MLT1K LTR MaLR -1 587 320 299 300 140 0 chr9 107772899 107772999 -34498445 - L2 LINE L2 -558 2756 2643 2123 115 10 7 chr9 107773411 107773707 -34497737 - AluSg SINE Alu -13 297 1 243 282 12 12 chr9 107773808 107773893 -34497551 - L1ME4a LINE L1 -95 6026 5942 1329 200 123 0 chr9 107774083 107774383 -34497061 + MER46C DNA MER2_type 1 337 -1 707 281 57 24 chr9 107774461 107774707 -34496737 - MIR SINE MIR -3 259 6 2144 128 0 0 chr9 107774806 107775096 -34496348 + AluSx SINE Alu 1 290 -22 2082 100 33 0 chr9 107775104 107775406 -34496038 + AluSg1 SINE Alu 1 311 0 26 74 0 0 chr9 107775766 107775820 -34495624 + AT_rich Low_complexity Low_complexity 1 54 0 305 256 31 78 chr9 107775820 107775949 -34495495 - MLT1K LTR MaLR -341 247 125 1433 107 0 126 chr9 107776293 107776555 -34494889 + AluSx SINE Alu 1 229 -83 1296 239 51 77 chr9 107777484 107777530 -34493914 - MLT2B1 LTR ERVL 0 554 508 2645 112 30 3 chr9 107777530 107777895 -34493549 - THE1C LTR MaLR 0 375 1 1296 239 51 77 chr9 107777895 107778328 -34493116 - MLT2B1 LTR ERVL -46 508 118 1638 181 4 4 chr9 107778328 107778599 -34492845 - AluJo SINE Alu -16 296 26 1296 239 51 77 chr9 107778599 107778714 -34492730 - MLT2B1 LTR ERVL -436 118 1 452 253 187 13 chr9 107778828 107778991 -34492453 - MIR SINE MIR -56 206 17 203 231 204 56 chr9 107779415 107779523 -34491921 - L2 LINE L2 -12 3260 3137 786 147 16 16 chr9 107779631 107779760 -34491684 + AluSg1 SINE Alu 3 131 -178 437 168 129 20 chr9 107779863 107779964 -34491480 - L1MC3 LINE L1 -485 7300 7189 262 344 0 0 chr9 107779964 107780054 -34491390 - MLT1K LTR MaLR -443 124 35 626 88 82 113 chr9 107780054 107780148 -34491296 - L1MC3 LINE L1 -688 7097 7008 2135 125 3 0 chr9 107780148 107780443 -34491001 - AluSx SINE Alu -16 296 1 626 88 82 113 chr9 107780443 107780507 -34490937 - L1MC3 LINE L1 -777 7008 6944 462 200 0 17 chr9 107780726 107780841 -34490603 - LTR37A LTR ERV1 0 426 314 2163 200 5 30 chr9 107780843 107781248 -34490196 - MLT2D LTR ERVL 0 414 20 791 214 33 97 chr9 107781229 107781560 -34489884 - LTR37B LTR ERV1 -106 362 53 * 1035 190 13 106 chr9 107781567 107781898 -34489546 + AluJo SINE Alu 1 302 0 2073 119 0 7 chr9 107782284 107782562 -34488882 - AluSx SINE Alu -28 284 9 244 297 40 20 chr9 107782749 107782850 -34488594 + L2 LINE L2 3168 3270 -2 353 289 58 3 chr9 107783781 107783829 -34487615 + MIR SINE MIR 35 79 -172 2160 135 0 0 chr9 107783829 107784133 -34487311 - AluSq SINE Alu -9 304 1 353 289 58 3 chr9 107784133 107784227 -34487217 + MIR SINE MIR 79 188 -63 231 36 0 0 chr9 107784476 107784504 -34486940 + (A)n Simple_repeat Simple_repeat 1 28 0 241 173 13 7 chr9 107784626 107784716 -34486728 + MIR SINE MIR 6 147 -115 1092 285 30 38 chr9 107784717 107784848 -34486596 - MLT1I LTR MaLR -2 407 276 2443 96 0 0 chr9 107784848 107785151 -34486293 - AluSq SINE Alu -10 303 1 1092 285 30 38 chr9 107785151 107785412 -34486032 - MLT1I LTR MaLR -133 276 18 185 250 59 0 chr9 107785441 107785509 -34485935 + MIR SINE MIR 145 216 -46 1823 118 89 0 chr9 107785533 107785804 -34485640 - AluSq SINE Alu -18 295 1 190 328 0 31 chr9 107785846 107785910 -34485534 - MIR SINE MIR -109 99 38 348 269 8 25 chr9 107786017 107786118 -34485326 + GA-rich Low_complexity Low_complexity 4 104 -16 2185 123 3 0 chr9 107786118 107786420 -34485024 + AluSx SINE Alu 1 303 -9 348 269 8 25 chr9 107786420 107786437 -34485007 + GA-rich Low_complexity Low_complexity 104 120 0 686 252 88 29 chr9 107786900 107787138 -34484306 - MIR SINE MIR 0 262 11 19434 161 53 10 chr9 107787297 107787845 -34483599 - L1P4 LINE L1 -492 7120 6597 2033 162 0 0 chr9 107787845 107788153 -34483291 + AluSx SINE Alu 1 308 -4 19434 161 53 10 chr9 107788153 107791220 -34480224 - L1P4 LINE L1 -1015 6597 3663 2113 100 7 0 chr9 107791220 107791525 -34479919 - AluSp SINE Alu 0 307 1 19434 161 53 10 chr9 107791525 107791725 -34479719 - L1P4 LINE L1 -3949 3663 3473 2198 108 0 7 chr9 107791725 107792020 -34479424 - AluSq SINE Alu -20 293 1 19434 161 53 10 chr9 107792020 107792586 -34478858 - L1P4 LINE L1 -4139 3473 2933 2259 70 35 3 chr9 107792586 107792873 -34478571 - AluY SINE Alu -15 296 1 19434 161 53 10 chr9 107792873 107795278 -34476166 - L1P4 LINE L1 -4679 2933 1 2389 53 3 0 chr9 107795330 107795615 -34475829 + AluY SINE Alu 1 286 -25 345 299 160 70 chr9 107795715 107796184 -34475260 + L2 LINE L2 2243 2753 -561 284 326 153 8 chr9 107796332 107796568 -34474876 - L2 LINE L2 -199 3073 2804 252 0 0 0 chr9 107796630 107796658 -34474786 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2680 172 8 29 chr9 107796686 107797197 -34474247 + MER41B LTR ERV1 134 466 -12 708 200 31 6 chr9 107797206 107797366 -34474078 - L1M4c LINE L1 -4761 2198 2035 601 84 12 12 chr9 107797373 107797456 -34473988 - FLAM SINE Alu -17 126 44 448 234 16 31 chr9 107797465 107797593 -34473851 - L1M4c LINE L1 -4892 2067 1942 8422 202 37 25 chr9 107797601 107799385 -34472059 - L1M4c LINE L1 -5052 1803 2 292 387 35 7 chr9 107799414 107799556 -34471888 - L2 LINE L2 -614 2700 2555 288 260 164 0 chr9 107799569 107799642 -34471802 + L2 LINE L2 3229 3313 0 308 247 35 24 chr9 107800015 107800100 -34471344 + MIR3 SINE MIR 119 204 -4 2183 103 21 3 chr9 107800305 107800596 -34470848 - AluSg SINE Alu -14 296 1 442 266 69 112 chr9 107801313 107801627 -34469817 + L1MEd LINE L1 562 839 -5280 411 38 0 0 chr9 107801627 107801680 -34469764 + (TG)n Simple_repeat Simple_repeat 2 54 0 442 266 69 112 chr9 107801680 107801975 -34469469 + L1MEd LINE L1 839 1145 -4974 278 236 28 88 chr9 107802008 107802224 -34469220 - L1MC5 LINE L1 -30 7931 7729 429 247 51 25 chr9 107802233 107802391 -34469053 + L1MEd LINE L1 1218 1379 -4931 273 269 0 0 chr9 107802392 107802444 -34469000 - MIR SINE MIR -151 111 60 302 297 59 0 chr9 107802734 107802835 -34468609 - MIR3 SINE MIR -23 185 79 2308 90 0 10 chr9 107803429 107803762 -34467682 + AluSq SINE Alu 1 330 0 473 300 62 0 chr9 107803888 107804048 -34467396 - L1ME LINE L1 -413 5708 5539 805 254 15 34 chr9 107804068 107804336 -34467108 + L1ME4a LINE L1 5747 6009 -112 447 266 62 70 chr9 107804361 107804515 -34466929 + MIR SINE MIR 6 159 -103 2382 83 3 0 chr9 107804515 107804816 -34466628 + AluSp SINE Alu 1 302 -11 447 266 62 70 chr9 107804816 107804920 -34466524 + MIR SINE MIR 159 262 0 1840 139 3 23 chr9 107804979 107805281 -34466163 - AluSx SINE Alu -16 296 1 2102 105 49 0 chr9 107805379 107805665 -34465779 - AluSx SINE Alu -12 300 1 243 88 0 0 chr9 107805731 107805765 -34465679 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 605 218 75 0 chr9 107805861 107806008 -34465436 + MER97a DNA MER1_type? 1 158 -736 236 237 0 0 chr9 107806009 107806047 -34465397 + AluJ/monomer SINE Alu 1 38 -265 * 241 235 0 0 chr9 107806036 107806104 -34465340 + Alu SINE Alu 233 300 0 257 181 181 24 chr9 107806104 107806187 -34465257 + MER97c DNA MER1_type? 150 245 -845 187 146 36 0 chr9 107806197 107806252 -34465192 + (TA)n Simple_repeat Simple_repeat 1 57 0 1822 222 99 6 chr9 107806257 107806761 -34464683 + MER97a DNA MER1_type? 243 793 -101 220 342 67 8 chr9 107806851 107806971 -34464473 - MIR SINE MIR -121 141 15 225 0 0 0 chr9 107807210 107807235 -34464209 + (A)n Simple_repeat Simple_repeat 1 25 0 24 53 0 0 chr9 107807282 107807320 -34464124 + AT_rich Low_complexity Low_complexity 1 38 0 376 273 154 57 chr9 107807785 107807893 -34463551 - MIR SINE MIR -9 253 157 1932 150 14 0 chr9 107807893 107808186 -34463258 - AluJo SINE Alu -14 298 2 376 273 154 57 chr9 107808186 107808304 -34463140 - MIR SINE MIR -105 157 5 280 346 0 0 chr9 107808371 107808449 -34462995 + MIR SINE MIR 25 102 -160 533 268 65 90 chr9 107808498 107808693 -34462751 + MLT1J1 LTR MaLR 66 206 -203 2241 98 0 3 chr9 107808693 107808988 -34462456 + AluSx SINE Alu 1 294 -18 533 268 65 90 chr9 107808988 107809182 -34462262 + MLT1J1 LTR MaLR 206 403 -6 1989 121 0 32 chr9 107809572 107809854 -34461590 + AluSx SINE Alu 1 273 -39 261 304 35 9 chr9 107810842 107810957 -34460487 + L2 LINE L2 2627 2744 -570 616 200 170 178 chr9 107811096 107811264 -34460180 + MLT1G1 LTR MaLR 35 203 -392 2037 128 0 7 chr9 107811264 107811553 -34459891 + AluSq SINE Alu 1 287 -26 616 200 170 178 chr9 107811553 107811634 -34459810 + MLT1G1 LTR MaLR 203 283 -312 2088 113 40 0 chr9 107811634 107811934 -34459510 + AluSx SINE Alu 1 312 0 616 200 170 178 chr9 107811934 107812249 -34459195 + MLT1G1 LTR MaLR 283 595 0 40 37 0 0 chr9 107812490 107812544 -34458900 + AT_rich Low_complexity Low_complexity 1 54 0 638 286 151 33 chr9 107812789 107813367 -34458077 - L1ME4a LINE L1 -223 5898 5264 21 36 0 0 chr9 107813538 107813566 -34457878 + AT_rich Low_complexity Low_complexity 1 28 0 1802 167 7 3 chr9 107813566 107813853 -34457591 - AluJb SINE Alu -24 288 1 231 316 25 0 chr9 107814011 107814090 -34457354 - L2 LINE L2 0 3313 3233 26 0 0 0 chr9 107814139 107814165 -34457279 + AT_rich Low_complexity Low_complexity 1 26 0 195 350 93 21 chr9 107814281 107814378 -34457066 + L2 LINE L2 3169 3272 0 264 345 67 0 chr9 107816738 107816857 -34454587 - MIR SINE MIR -71 191 65 254 235 71 51 chr9 107817349 107817447 -34453997 + L2 LINE L2 3173 3272 0 222 254 56 59 chr9 107817550 107817675 -34453769 + MIR SINE MIR 60 179 -29 228 231 0 26 chr9 107818068 107818146 -34453298 + G-rich Low_complexity Low_complexity 6 81 0 312 280 121 108 chr9 107818223 107818288 -34453156 + L1M2 LINE L1 537 600 -6249 189 74 0 0 chr9 107818288 107818315 -34453129 + (CCG)n Simple_repeat Simple_repeat 2 28 0 312 280 121 108 chr9 107818315 107818821 -34452623 + L1M2 LINE L1 600 1115 -5734 2089 124 3 10 chr9 107820845 107821151 -34450293 - AluSq SINE Alu -5 308 5 333 261 34 25 chr9 107821186 107821305 -34450139 + L2 LINE L2 3169 3288 -25 25 0 0 0 chr9 107822109 107822134 -34449310 + AT_rich Low_complexity Low_complexity 1 25 0 2228 101 0 32 chr9 107823083 107823391 -34448053 - AluSq SINE Alu -15 298 1 1990 141 6 29 chr9 107823422 107823734 -34447710 - AluJo SINE Alu -7 305 1 186 298 96 39 chr9 107824155 107824259 -34447185 - MIR SINE MIR -81 127 18 561 186 8 65 chr9 107824303 107824427 -34447017 - MER5B DNA MER1_type -7 171 55 313 138 17 35 chr9 107824452 107824510 -34446934 - MER66A LTR ERV1 -143 335 279 249 259 0 0 chr9 107824510 107824564 -34446880 - MER5B DNA MER1_type -123 55 2 * 987 343 135 25 chr9 107824564 107825487 -34445957 + L2 LINE L2 2161 3213 -100 1661 180 52 12 chr9 107825487 107825814 -34445630 + MER58B DNA MER1_type 2 341 0 987 343 135 25 chr9 107825814 107825927 -34445517 + L2 LINE L2 3213 3312 -1 1032 289 67 38 chr9 107827309 107827641 -34443803 - L1MC4 LINE L1 0 8042 7686 2048 127 0 13 chr9 107827641 107827940 -34443504 - AluSq SINE Alu -18 295 1 1032 289 67 38 chr9 107827940 107828161 -34443283 - L1MC4 LINE L1 -356 7686 7473 21 0 0 0 chr9 107828208 107828229 -34443215 + AT_rich Low_complexity Low_complexity 1 21 0 268 264 28 0 chr9 107828337 107828409 -34443035 + MIR SINE MIR 74 147 -115 464 234 46 107 chr9 107829047 107829124 -34442320 + Charlie8 DNA MER1_type 1 81 -2336 2192 127 0 0 chr9 107829124 107829423 -34442021 + AluSp SINE Alu 1 299 -14 464 234 46 107 chr9 107829423 107829542 -34441902 + Charlie8 DNA MER1_type 81 185 -2232 2099 122 0 26 chr9 107829739 107830050 -34441394 + AluSq SINE Alu 1 303 -10 3006 130 103 10 chr9 107830179 107830701 -34440743 + MER4B LTR ERV1 1 571 -39 380 59 0 0 chr9 107830695 107830746 -34440698 + MADE1 DNA Mariner 30 80 0 * 282 125 0 21 chr9 107830746 107830787 -34440657 + MER4D LTR ERV1 833 872 0 338 293 85 0 chr9 107830788 107830952 -34440492 + MIR SINE MIR 33 210 -52 2316 57 40 7 chr9 107831027 107831326 -34440118 - AluY SINE Alu -2 309 1 296 230 53 128 chr9 107831533 107831625 -34439819 - L1ME4a LINE L1 -223 5898 5824 1758 106 12 23 chr9 107831625 107831908 -34439536 + AluSx SINE Alu 30 309 0 296 230 53 128 chr9 107831908 107832001 -34439443 - L1ME4a LINE L1 -297 5824 5726 2534 98 52 6 chr9 107832132 107832479 -34438965 + THE1B LTR MaLR 2 364 0 190 316 0 18 chr9 107834019 107834076 -34437368 - L2 LINE L2 -8 3264 3209 2201 107 7 3 chr9 107835037 107835336 -34436108 + AluSx SINE Alu 1 300 -12 189 94 0 0 chr9 107835485 107835517 -34435927 + (T)n Simple_repeat Simple_repeat 1 32 0 525 186 21 0 chr9 107835845 107835942 -34435502 + MLT1E3 LTR MaLR 526 624 0 2312 105 3 0 chr9 107836310 107836614 -34434830 + AluSp SINE Alu 1 305 -8 346 302 141 10 chr9 107836874 107837066 -34434378 + L1ME4a LINE L1 5619 5835 -286 209 156 0 44 chr9 107837714 107837759 -34433685 + (TCTCTG)n Simple_repeat Simple_repeat 5 47 0 2089 113 0 27 chr9 107837811 107838112 -34433332 - AluSx SINE Alu -19 293 1 314 172 172 11 chr9 107838291 107838339 -34433105 + L2 LINE L2 2766 2805 -509 348 24 0 0 chr9 107838339 107838380 -34433064 + (CA)n Simple_repeat Simple_repeat 1 41 0 314 172 172 11 chr9 107838380 107838418 -34433026 + L2 LINE L2 2805 2866 -448 180 340 0 0 chr9 107838415 107838468 -34432976 + L2 LINE L2 2995 3047 -266 * 2443 203 51 14 chr9 107838598 107839091 -34432353 + MLT1F LTR MaLR 2 512 -30 362 197 45 13 chr9 107839464 107839775 -34431669 + (TATG)n Simple_repeat Simple_repeat 1 321 0 439 180 28 17 chr9 107839775 107839953 -34431491 + (TG)n Simple_repeat Simple_repeat 1 180 0 456 198 162 7 chr9 107839996 107840147 -34431297 + L1MD3 LINE L1 7612 7995 0 328 294 61 43 chr9 107841159 107841322 -34430122 + MIR SINE MIR 8 173 -89 704 339 55 15 chr9 107841431 107841761 -34429683 - LTR16C LTR ERVL -5 486 144 995 170 142 8 chr9 107842743 107842996 -34428448 + L1MC5 LINE L1 7246 7532 -429 2156 102 14 0 chr9 107842997 107843290 -34428154 + AluSg SINE Alu 1 297 -13 1352 177 28 12 chr9 107843425 107843679 -34427765 + AluJb SINE Alu 37 294 -18 239 118 24 129 chr9 107843713 107843798 -34427646 + L1MC5 LINE L1 7609 7684 -277 2870 106 8 8 chr9 107843807 107844202 -34427242 - L1PB3 LINE L1 0 6154 5760 1078 74 198 0 chr9 107844212 107844374 -34427070 - AluSg/x SINE Alu -9 301 108 601 145 12 0 chr9 107844475 107844558 -34426886 - AluS SINE Alu -227 85 2 2148 104 3 3 chr9 107844600 107844889 -34426555 + AluSp SINE Alu 1 289 -24 1977 152 0 9 chr9 107845480 107845795 -34425649 + AluJb SINE Alu 1 312 0 422 286 0 0 chr9 107845914 107846019 -34425425 - MIR SINE MIR -109 153 49 1801 136 12 78 chr9 107846020 107846351 -34425093 - MLT1B LTR MaLR 0 390 82 1373 162 79 16 chr9 107846362 107846639 -34424805 + AluJo SINE Alu 13 305 0 447 222 0 0 chr9 107846640 107846721 -34424723 - MLT1B LTR MaLR -299 91 11 2307 115 0 3 chr9 107847070 107847383 -34424061 - AluSx SINE Alu 0 312 1 630 262 63 92 chr9 107847740 107847925 -34423519 - MLT1I LTR MaLR -2 407 235 2597 53 0 0 chr9 107847925 107848228 -34423216 + AluY SINE Alu 1 303 -8 630 262 63 92 chr9 107848228 107848389 -34423055 - MLT1I LTR MaLR -174 235 71 2140 117 7 0 chr9 107848434 107848732 -34422712 + AluSx SINE Alu 4 303 -9 295 327 122 55 chr9 107848772 107849371 -34422073 + L2 LINE L2 2035 2673 -641 2282 104 0 0 chr9 107849404 107849701 -34421743 + AluSx SINE Alu 1 297 -15 2138 128 0 0 chr9 107849709 107850006 -34421438 + AluSq SINE Alu 1 297 -16 238 326 166 34 chr9 107850009 107850120 -34421324 - L2 LINE L2 -23 3249 3154 2410 71 0 0 chr9 107850120 107850415 -34421029 + AluY SINE Alu 1 295 -16 238 326 166 34 chr9 107850415 107850478 -34420966 - L2 LINE L2 -118 3154 3052 * 245 329 108 29 chr9 107850465 107850794 -34420650 + L2 LINE L2 2684 3104 -168 263 133 0 17 chr9 107851196 107851256 -34420188 + (TG)n Simple_repeat Simple_repeat 1 59 0 186 71 0 0 chr9 107851255 107851283 -34420161 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2087 121 39 18 chr9 107851822 107852152 -34419292 - THE1C LTR MaLR 0 375 39 1157 178 5 15 chr9 107852155 107852352 -34419092 + AluSg/x SINE Alu 103 297 -13 2152 123 33 0 chr9 107852539 107852839 -34418605 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr9 107854012 107854035 -34417409 + AT_rich Low_complexity Low_complexity 1 23 0 740 204 27 14 chr9 107854294 107854422 -34417022 + MER3 DNA MER1_type 1 133 -29 2311 108 0 7 chr9 107854422 107854729 -34416715 - AluSx SINE Alu -7 305 1 740 204 27 14 chr9 107854729 107854747 -34416697 + MER3 DNA MER1_type 133 149 -60 1168 100 0 0 chr9 107854749 107854899 -34416545 - AluSg/x SINE Alu -18 294 145 306 192 0 0 chr9 107854902 107854954 -34416490 + MER3 DNA MER1_type 158 209 0 228 284 0 27 chr9 107854954 107854985 -34416459 - MER3 DNA MER1_type -162 47 19 196 401 3 0 chr9 107855043 107855117 -34416327 + MIR SINE MIR 32 107 -101 180 250 67 0 chr9 107855539 107855599 -34415845 - L2 LINE L2 0 3272 3209 225 0 0 0 chr9 107855651 107855676 -34415768 + (A)n Simple_repeat Simple_repeat 1 25 0 236 306 0 42 chr9 107855676 107855748 -34415696 + MIR SINE MIR 19 87 -121 2143 139 0 0 chr9 107855983 107856293 -34415151 - AluSg SINE Alu 0 310 1 1452 167 14 29 chr9 107856709 107856984 -34414460 + AluJb SINE Alu 11 281 -31 2225 93 10 3 chr9 107856984 107857274 -34414170 - AluSg SINE Alu -17 293 1 635 287 55 10 chr9 107857318 107857520 -34413924 - MLT1L LTR MaLR -34 581 371 245 269 137 91 chr9 107857595 107857792 -34413652 - MLT1L LTR MaLR -407 208 3 26 30 0 0 chr9 107858347 107858380 -34413064 + AT_rich Low_complexity Low_complexity 1 33 0 434 333 44 0 chr9 107858956 107859115 -34412329 + MIR SINE MIR 1 166 -96 2110 128 7 0 chr9 107859269 107859565 -34411879 - AluJb SINE Alu -14 298 1 506 263 86 24 chr9 107859603 107859812 -34411632 - MLT1J LTR MaLR -1 510 289 1936 118 3 57 chr9 107859819 107859995 -34411449 - AluJo SINE Alu -15 297 113 513 0 0 0 chr9 107859995 107860052 -34411392 + (TTTTA)n Simple_repeat Simple_repeat 4 60 0 2107 108 7 0 chr9 107860053 107860339 -34411105 - AluSx SINE Alu -24 288 1 2281 113 3 0 chr9 107860339 107860649 -34410795 - AluSq SINE Alu -2 311 1 1936 118 3 57 chr9 107860649 107860783 -34410661 - AluJo SINE Alu -197 115 1 622 265 75 6 chr9 107861622 107861841 -34409603 - MIR SINE MIR -15 247 16 1988 116 3 53 chr9 107861936 107862255 -34409189 - AluSq SINE Alu -7 306 4 245 266 83 46 chr9 107863471 107863580 -34407864 - MER103 DNA DNA -45 121 9 190 250 0 0 chr9 107864163 107864207 -34407237 + L2 LINE L2 3266 3309 -4 2275 97 3 16 chr9 107865029 107865337 -34406107 - AluSx SINE Alu -8 304 1 23 33 0 0 chr9 107866154 107866184 -34405260 + AT_rich Low_complexity Low_complexity 1 30 0 502 318 180 16 chr9 107866346 107866723 -34404721 - L3 LINE CR1 -7 1570 1132 1428 241 112 71 chr9 107866761 107866791 -34404653 - HAL1 LINE L1 0 2507 2480 2398 77 3 7 chr9 107866791 107867091 -34404353 - AluSq SINE Alu -14 299 1 1428 241 112 71 chr9 107867091 107867419 -34404025 - HAL1 LINE L1 -27 2480 2167 1751 176 3 10 chr9 107867419 107867721 -34403723 - AluJb SINE Alu -12 300 1 1428 241 112 71 chr9 107867721 107868052 -34403392 - HAL1 LINE L1 -340 2167 1781 2432 84 3 0 chr9 107868052 107868350 -34403094 - AluSp SINE Alu -14 299 1 1428 241 112 71 chr9 107868350 107868409 -34403035 - HAL1 LINE L1 -726 1781 1726 3526 195 70 15 chr9 107868417 107869197 -34402247 - L1ME1 LINE L1 -23 6143 5321 1752 161 3 34 chr9 107869229 107869520 -34401924 - AluJo SINE Alu -30 282 1 2620 214 20 27 chr9 107869602 107870261 -34401183 - L1ME1 LINE L1 -1031 5115 4462 2944 229 154 23 chr9 107870270 107871351 -34400093 - HAL1 LINE L1 -766 1741 520 748 298 121 4 chr9 107871360 107871625 -34399819 - HAL1 LINE L1 -2061 446 151 292 279 44 0 chr9 107871631 107871699 -34399745 - HAL1 LINE L1 -2420 87 17 2181 86 21 3 chr9 107871761 107872052 -34399392 - AluSq SINE Alu -17 296 1 263 278 219 39 chr9 107872110 107872416 -34399028 - L3 LINE CR1 -553 1024 664 418 182 13 0 chr9 107872439 107872516 -34398928 - HAL1 LINE L1 -1740 767 690 23 54 0 0 chr9 107872517 107872554 -34398890 + AT_rich Low_complexity Low_complexity 1 37 0 474 373 86 16 chr9 107872635 107872949 -34398495 - L3 LINE CR1 -1062 515 180 242 299 84 47 chr9 107873318 107873425 -34398019 - L2 LINE L2 -4 3268 3158 317 273 208 15 chr9 107873607 107873867 -34397577 + L2 LINE L2 2652 2961 -353 460 213 234 25 chr9 107873904 107874101 -34397343 + L2 LINE L2 3074 3311 -2 2298 107 0 0 chr9 107874868 107875168 -34396276 - AluSx SINE Alu -12 300 1 319 314 102 0 chr9 107875815 107875933 -34395511 - MIR SINE MIR -86 176 47 201 74 0 0 chr9 107876217 107876244 -34395200 + (TA)n Simple_repeat Simple_repeat 2 28 0 2207 126 0 10 chr9 107876244 107876544 -34394900 - AluSx SINE Alu -13 299 1 214 207 23 103 chr9 107878040 107878127 -34393317 - MIR SINE MIR -124 138 59 242 164 66 16 chr9 107878148 107878209 -34393235 - L1MD3 LINE L1 -288 7707 7644 2276 87 0 3 chr9 107879057 107879355 -34392089 - AluSx SINE Alu -12 300 4 1641 257 161 12 chr9 107879619 107879818 -34391626 - L2 LINE L2 0 3313 3145 456 19 0 0 chr9 107879818 107879871 -34391573 + (TG)n Simple_repeat Simple_repeat 1 53 0 1641 257 161 12 chr9 107879871 107880495 -34390949 - L2 LINE L2 -168 3145 2356 2067 116 7 17 chr9 107881310 107881476 -34389968 - AluSx SINE Alu -14 298 132 213 108 0 0 chr9 107881476 107881513 -34389931 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2330 64 0 0 chr9 107881513 107881794 -34389650 - AluY SINE Alu -30 281 1 2067 116 7 17 chr9 107881794 107881927 -34389517 - AluSx SINE Alu -178 134 1 228 191 0 0 chr9 107881933 107881975 -34389469 - Tigger6b DNA MER2_type -735 862 821 630 57 68 0 chr9 107882367 107882455 -34388989 + AluY SINE Alu 204 297 -14 475 298 118 33 chr9 107882480 107882565 -34388879 + L1M4 LINE L1 3896 3972 -2174 2381 74 0 3 chr9 107882565 107882863 -34388581 - AluSc SINE Alu -12 297 1 475 298 118 33 chr9 107882863 107883378 -34388066 + L1M4 LINE L1 3972 4594 -1552 318 354 21 13 chr9 107883477 107883634 -34387810 + MIR SINE MIR 2 162 -46 758 269 27 0 chr9 107883982 107884168 -34387276 + MER63A DNA MER1_type 2 192 -18 242 278 0 0 chr9 107885663 107885717 -34385727 - MIR3 SINE MIR -2 206 153 2403 74 3 0 chr9 107885794 107886090 -34385354 - AluSg SINE Alu -12 298 2 199 258 97 32 chr9 107887358 107887420 -34384024 + L2 LINE L2 3188 3253 -19 940 121 8 0 chr9 107887477 107887609 -34383835 - FLAM_C SINE Alu 0 133 1 1909 130 133 13 chr9 107888032 107888416 -34383028 - L1MB8 LINE L1 -5 6173 5744 1062 174 115 66 chr9 107888717 107889126 -34382318 - LTR7 LTR ERV1 0 450 22 1515 163 0 0 chr9 107889126 107889353 -34382091 + AluSx SINE Alu 64 290 -22 773 248 97 17 chr9 107889490 107889728 -34381716 + MIR SINE MIR 1 257 -5 1786 187 10 3 chr9 107889927 107890226 -34381218 + AluJo SINE Alu 3 303 -9 476 159 0 0 chr9 107890446 107890534 -34380910 + L1MA9 LINE L1 6220 6307 -5 1914 176 0 0 chr9 107891580 107891887 -34379557 - AluJb SINE Alu -2 310 4 230 214 18 18 chr9 107891919 107891975 -34379469 - L1MB8 LINE L1 -523 5598 5543 231 162 118 0 chr9 107892152 107892220 -34379224 - MER103 DNA DNA -80 86 11 341 266 105 8 chr9 107892416 107892540 -34378904 - L2 LINE L2 0 3272 3137 2306 105 3 6 chr9 107893044 107893357 -34378087 - AluSq SINE Alu -1 312 1 33 25 0 0 chr9 107893630 107893670 -34377774 + AT_rich Low_complexity Low_complexity 1 40 0 1776 151 58 0 chr9 107896132 107896410 -34375034 + AluJb SINE Alu 1 294 -18 1068 269 73 42 chr9 107897496 107898109 -34373335 - L1MCa LINE L1 -4601 2006 1166 351 0 0 0 chr9 107898109 107898148 -34373296 + (TG)n Simple_repeat Simple_repeat 2 40 0 1068 269 73 42 chr9 107898148 107898319 -34373125 - L1MCa LINE L1 -5441 1166 1002 286 304 78 9 chr9 107898467 107898582 -34372862 + MIR3 SINE MIR 83 205 -3 463 252 113 6 chr9 107899029 107899188 -34372256 + MIR SINE MIR 79 254 -8 412 290 173 2 chr9 107900117 107900275 -34371169 - MIR3 SINE MIR -10 198 3 2294 93 7 0 chr9 107900617 107900919 -34370525 - AluSp SINE Alu -9 304 1 210 37 0 0 chr9 107901569 107901596 -34369848 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2350 73 10 0 chr9 107901598 107901887 -34369557 - AluSq SINE Alu -21 292 1 243 333 143 41 chr9 107902034 107902181 -34369263 - L2 LINE L2 0 3272 3111 288 254 79 40 chr9 107902795 107902921 -34368523 + MIR3 SINE MIR 2 132 -76 658 250 12 29 chr9 107903318 107903490 -34367954 - MIR3 SINE MIR -21 187 19 2158 100 24 0 chr9 107904015 107904306 -34367138 - AluSq SINE Alu -15 298 1 278 322 95 47 chr9 107904846 107905057 -34366387 - MIR SINE MIR -5 257 37 260 307 117 37 chr9 107905537 107905582 -34365862 - MER5B DNA MER1_type -1 177 137 2104 144 7 0 chr9 107905582 107905888 -34365556 - AluSx SINE Alu -4 308 1 260 307 117 37 chr9 107905888 107906005 -34365439 - MER5B DNA MER1_type -41 137 2 365 350 113 18 chr9 107906020 107906303 -34365141 - L2 LINE L2 -561 2753 2444 693 234 86 35 chr9 107906724 107906921 -34364523 - MIR SINE MIR -8 254 48 323 127 0 0 chr9 107907668 107907723 -34363721 - L1MB3 LINE L1 -18 6165 6111 389 310 82 18 chr9 107907848 107908019 -34363425 - MIR3 SINE MIR -6 202 21 350 25 0 0 chr9 107908181 107908221 -34363223 + (T)n Simple_repeat Simple_repeat 1 40 0 196 191 106 0 chr9 107908786 107908833 -34362611 + L2 LINE L2 3261 3312 -1 1481 218 3 7 chr9 107909247 107909541 -34361903 - AluJo SINE Alu -7 305 13 829 211 51 40 chr9 107909788 107910063 -34361381 + L1MB2 LINE L1 4999 5276 -870 3354 149 56 29 chr9 107910064 107910388 -34361056 + L1MB2 LINE L1 5468 5782 -389 1922 150 29 13 chr9 107910388 107910694 -34360750 + AluJb SINE Alu 2 312 0 3354 149 56 29 chr9 107910694 107911053 -34360391 + L1MB2 LINE L1 5782 6169 -2 1991 118 49 9 chr9 107911053 107911399 -34360045 + L1MB3 LINE L1 5814 6176 -7 2417 100 3 0 chr9 107911893 107912202 -34359242 + AluSq SINE Alu 1 310 -3 1326 208 27 0 chr9 107912965 107913225 -34358219 + Tigger7 DNA MER2_type 1 267 -466 517 168 11 11 chr9 107913224 107913319 -34358125 + Tigger7 DNA MER2_type 2490 2584 -3 * 187 296 19 19 chr9 107913574 107913628 -34357816 - L2 LINE L2 -9 3263 3210 805 147 8 16 chr9 107913699 107913828 -34357616 + FLAM_A SINE Alu 2 129 -4 232 149 0 43 chr9 107914694 107914741 -34356703 - L2 LINE L2 0 3313 3269 1113 178 9 32 chr9 107915158 107915377 -34356067 + MER20 DNA MER1_type 1 214 -5 1966 149 4 0 chr9 107915548 107915829 -34355615 - AluJo SINE Alu -30 282 1 216 0 0 0 chr9 107916403 107916427 -34355017 + (T)n Simple_repeat Simple_repeat 1 24 0 708 310 45 16 chr9 107917647 107917889 -34353555 - MIR SINE MIR -2 260 12 2240 120 0 0 chr9 107917921 107918220 -34353224 + AluSx SINE Alu 1 299 -13 499 254 43 49 chr9 107918595 107918780 -34352664 - MIR SINE MIR -59 203 20 666 180 67 7 chr9 107918825 107918975 -34352469 - MIR SINE MIR -1 261 103 412 255 7 18 chr9 107919822 107919940 -34351504 + MIR SINE MIR 35 149 -62 195 42 0 0 chr9 107920008 107920032 -34351412 + (TTA)n Simple_repeat Simple_repeat 3 26 0 214 355 0 0 chr9 107921509 107921571 -34349873 - MIR SINE MIR -80 128 67 289 88 70 0 chr9 107921754 107921811 -34349633 - L1MD3 LINE L1 -13 7982 7922 207 254 90 0 chr9 107922631 107922698 -34348746 + L2 LINE L2 3232 3304 -9 409 347 162 0 chr9 107922756 107923053 -34348391 + L2 LINE L2 2944 3288 -25 622 264 84 15 chr9 107923055 107923363 -34348081 - L1ME LINE L1 -459 5662 5364 1204 221 21 14 chr9 107923862 107924147 -34347297 - MLT1E LTR MaLR 0 593 307 1945 129 0 17 chr9 107924308 107924623 -34346821 - AluSx SINE Alu 0 310 1 220 228 326 0 chr9 107925462 107925554 -34345890 - MIR SINE MIR -64 144 23 186 71 0 0 chr9 107925819 107925847 -34345597 + (T)n Simple_repeat Simple_repeat 1 28 0 268 268 127 86 chr9 107926603 107926823 -34344621 - L2 LINE L2 0 3313 3085 364 206 202 31 chr9 107926928 107927151 -34344293 + L1ME4a LINE L1 5860 6120 -1 257 320 26 0 chr9 107927155 107927233 -34344211 - L2 LINE L2 -78 3194 3115 1175 225 38 101 chr9 107927366 107927808 -34343636 - MLT1E2 LTR MaLR 0 593 220 2157 118 3 3 chr9 107928735 107929039 -34342405 - AluSx SINE Alu -8 304 1 1069 272 132 40 chr9 107929741 107930169 -34341275 - MER77 LTR ERV1 -4 601 154 431 183 214 23 chr9 107930195 107930326 -34341118 - MER77 LTR ERV1 -395 210 55 2073 223 55 52 chr9 107930428 107931106 -34340338 - L1ME1 LINE L1 -4 6162 5483 677 225 46 7 chr9 107931111 107931286 -34340158 - FAM SINE Alu 0 49 1 1609 232 39 7 chr9 107931318 107931924 -34339520 - L1ME1 LINE L1 -682 5482 4855 272 294 40 0 chr9 107932370 107932496 -34338948 + L1MB7 LINE L1 4482 4612 -1534 295 232 119 86 chr9 107932851 107933002 -34338442 - Charlie8 DNA MER1_type -2182 235 80 2067 109 36 10 chr9 107933500 107933802 -34337642 + AluSq SINE Alu 1 310 -3 394 215 96 22 chr9 107934007 107934142 -34337302 + MIR SINE MIR 117 261 -1 1793 51 203 0 chr9 107934552 107934808 -34336636 - AluY SINE Alu -1 310 3 2095 133 0 7 chr9 107934810 107935112 -34336332 - AluSx SINE Alu -12 300 1 3440 187 27 6 chr9 107935245 107935915 -34335529 + L1MB7 LINE L1 5322 6005 -173 2082 153 102 23 chr9 107935923 107936320 -34335124 - MSTC LTR MaLR 0 428 1 646 198 22 16 chr9 107936321 107936503 -34334941 + L1MB7 LINE L1 6002 6184 0 1700 185 0 20 chr9 107936633 107936930 -34334514 - AluJo SINE Alu -21 291 1 529 321 115 44 chr9 107937307 107937803 -34333641 + L2 LINE L2 2167 2697 -617 2235 84 0 4 chr9 107937851 107938125 -34333319 - AluSx SINE Alu -21 291 19 684 325 58 53 chr9 107938181 107938575 -34332869 + L2 LINE L2 2875 3270 -2 1189 276 99 24 chr9 107938663 107939116 -34332328 - L2 LINE L2 -1 3312 2826 582 343 85 39 chr9 107940299 107940663 -34330781 + L2 LINE L2 2891 3271 -1 486 305 134 0 chr9 107941931 107942149 -34329295 + MIR SINE MIR 4 255 -7 2238 112 0 0 chr9 107942264 107942568 -34328876 - AluSx SINE Alu -8 304 1 442 268 115 22 chr9 107943007 107943190 -34328254 - MIR SINE MIR -26 236 37 498 219 10 0 chr9 107943547 107943643 -34327801 + MIR SINE MIR 166 262 0 2194 113 3 10 chr9 107943673 107943974 -34327470 + AluSq SINE Alu 1 299 -14 297 221 0 0 chr9 107943983 107944051 -34327393 + (TGG)n Simple_repeat Simple_repeat 3 70 0 293 250 17 58 chr9 107945105 107945225 -34326219 - L1ME4a LINE L1 -65 6056 5942 394 298 70 38 chr9 107945984 107946142 -34325302 - MER5A DNA MER1_type -25 164 2 363 44 0 0 chr9 107946267 107946312 -34325132 + (TG)n Simple_repeat Simple_repeat 2 46 0 501 253 99 27 chr9 107946958 107947177 -34324267 + MIR SINE MIR 13 248 -14 924 234 39 24 chr9 107947360 107947565 -34323879 + MIR SINE MIR 13 220 -42 224 286 50 64 chr9 107947707 107947847 -34323597 - L2 LINE L2 -251 3062 2925 537 293 54 27 chr9 107950743 107950965 -34320479 + MIR SINE MIR 9 236 -26 23 0 8 0 chr9 107951425 107951486 -34319958 + AT_rich Low_complexity Low_complexity 1 23 0 202 378 95 0 chr9 107953251 107953325 -34318119 - L2 LINE L2 -47 3225 3145 547 264 104 16 chr9 107953454 107953647 -34317797 + MIR SINE MIR 20 229 -33 199 310 46 23 chr9 107954001 107954088 -34317356 - L2 LINE L2 0 3272 3184 2028 143 3 7 chr9 107954109 107954546 -34316898 + AluSx SINE Alu 1 312 0 480 279 114 41 chr9 107954586 107954805 -34316639 - MIR SINE MIR -6 256 22 840 183 0 0 chr9 107954836 107954967 -34316477 + FLAM_C SINE Alu 1 131 -12 28 0 0 0 chr9 108055779 108055807 -34215637 + AT_rich Low_complexity Low_complexity 1 28 0 470 286 42 11 chr9 108055861 108056029 -34215415 - MLT1D LTR MaLR 0 467 289 340 170 151 50 chr9 108056193 108056352 -34215092 - Charlie7 DNA MER1_type 0 2612 2438 955 173 10 46 chr9 108056644 108056841 -34214603 - MLT1D-int LTR MaLR -202 1169 980 2497 213 63 47 chr9 108057042 108057895 -34213549 - MLT1D-int LTR MaLR -484 887 1 268 224 0 0 chr9 108057897 108057964 -34213480 - MLT1D LTR MaLR -2 503 437 247 172 155 0 chr9 108057993 108058051 -34213393 - MLT1D LTR MaLR -161 344 278 466 259 48 0 chr9 108058088 108058235 -34213209 - MLT1D LTR MaLR -309 196 43 2207 181 103 19 chr9 108058369 108060429 -34211015 + SATR1 Satellite Satellite 1 1887 -4648 3166 119 51 6 chr9 108060429 108060918 -34210526 - MER9 LTR ERVK 0 511 1 2207 181 103 19 chr9 108060918 108064398 -34207046 + SATR1 Satellite Satellite 1887 6535 0 2200 159 115 10 chr9 108064436 108065227 -34206217 + SATR1 Satellite Satellite 1 874 0 2080 189 102 6 chr9 108065258 108066019 -34205425 + SATR1 Satellite Satellite 1 834 -218 2305 159 104 27 chr9 108066123 108068609 -34202835 - SATR1 Satellite Satellite -24 2676 1 2426 146 106 12 chr9 108068636 108069126 -34202318 - SATR1 Satellite Satellite -6 1740 1298 2543 44 0 0 chr9 108069126 108069424 -34202020 - AluY SINE Alu -13 298 1 2426 146 106 12 chr9 108069424 108070226 -34201218 - SATR1 Satellite Satellite -448 1298 1 7695 155 42 24 chr9 108070326 108071936 -34199508 + L1P LINE L1 1994 3633 -2513 1279 91 46 10 chr9 108071936 108072127 -34199317 + L1PA11 LINE L1 5971 6174 0 1428 227 73 9 chr9 108072146 108072587 -34198857 - L1M4 LINE L1 -1424 4722 4254 611 133 9 3 chr9 108072602 108072828 -34198616 + AluSx SINE Alu 1 306 -4 1252 222 24 0 chr9 108072834 108073122 -34198322 - L1M4 LINE L1 -1893 4253 3959 32 56 0 14 chr9 108073527 108073569 -34197875 + AT_rich Low_complexity Low_complexity 1 43 -27 4485 90 14 14 chr9 108073569 108074224 -34197220 - L1PB2 LINE L1 -3 6148 5494 32 56 0 14 chr9 108074224 108074252 -34197192 + AT_rich Low_complexity Low_complexity 43 70 0 314 324 75 12 chr9 108074345 108074518 -34196926 - L2 LINE L2 -1358 1956 1773 288 317 25 0 chr9 108074518 108074638 -34196806 + L1ME LINE L1 5539 5661 -503 358 254 51 25 chr9 108074870 108074988 -34196456 - MIR SINE MIR -91 171 51 1712 167 41 17 chr9 108075217 108075510 -34195934 + AluSg SINE Alu 1 300 -10 597 266 232 66 chr9 108075738 108076271 -34195173 + L2 LINE L2 2697 3313 0 4771 113 35 63 chr9 108076336 108076872 -34194572 - Tigger3b DNA MER2_type -1798 1230 729 1293 139 46 0 chr9 108076872 108077110 -34194334 - L1MA4 LINE L1 -9 6291 6043 4771 113 35 63 chr9 108077110 108077491 -34193953 - Tigger3b DNA MER2_type -2299 729 339 23 0 0 0 chr9 108077491 108077514 -34193930 + AT_rich Low_complexity Low_complexity 1 23 0 276 204 0 0 chr9 108077520 108077569 -34193875 + AluJ/monomer SINE Alu 1 49 -253 479 238 138 9 chr9 108077662 108077893 -34193551 - L1MEc LINE L1 -4139 2257 1997 * 1514 204 32 36 chr9 108077891 108078297 -34193147 - L1MA9 LINE L1 -120 6192 5787 1275 165 13 13 chr9 108078297 108078533 -34192911 - MER46A DNA MER2_type 0 236 1 1514 204 32 36 chr9 108078533 108078566 -34192878 - L1MA9 LINE L1 -525 5787 5755 2166 149 31 8 chr9 108078566 108078956 -34192488 + MSTB LTR MaLR 1 399 -27 11615 63 8 1 chr9 108078970 108081250 -34190194 - L1PA6 LINE L1 -11 6143 3839 9589 174 22 9 chr9 108081357 108083345 -34188099 + L1 LINE L1 3250 5263 -883 2172 184 93 11 chr9 108083349 108084452 -34186992 - SATR1 Satellite Satellite 0 1193 1 416 229 11 33 chr9 108084463 108084646 -34186798 + (TAA)n Simple_repeat Simple_repeat 1 179 0 27 87 0 0 chr9 108084712 108084781 -34186663 + AT_rich Low_complexity Low_complexity 1 69 0 2116 187 99 14 chr9 108084802 108089297 -34182147 - SATR1 Satellite Satellite 0 4875 1 416 231 5 38 chr9 108089305 108089491 -34181953 + (TAA)n Simple_repeat Simple_repeat 1 180 0 264 216 16 54 chr9 108089502 108089687 -34181757 + (TAA)n Simple_repeat Simple_repeat 2 179 0 2256 167 133 4 chr9 108089688 108091275 -34180169 + SATR1 Satellite Satellite 1 1791 -5 1770 212 117 0 chr9 108091302 108091602 -34179842 + SATR1 Satellite Satellite 1 365 -105 7769 16 1 2 chr9 108091602 108092835 -34178609 + L1PA3 LINE L1 4923 6154 -1 1770 212 117 0 chr9 108092835 108092954 -34178490 + SATR1 Satellite Satellite 365 469 -1 1467 186 124 63 chr9 108092986 108093578 -34177866 + SATR1 Satellite Satellite 1 628 0 325 304 33 0 chr9 108095563 108095655 -34175789 - L2 LINE L2 -4 3268 3174 589 233 47 17 chr9 108095795 108095967 -34175477 + MER5B DNA MER1_type 2 178 0 7937 11 0 0 chr9 108096378 108097521 -34173923 - L1PA3 LINE L1 -4 6151 5009 13414 34 1 0 chr9 108097522 108099215 -34172229 + L1PA3 LINE L1 3312 5006 -1140 1774 215 128 51 chr9 108099507 108099908 -34171536 - L1ME1 LINE L1 -52 6114 5653 2224 117 7 3 chr9 108099908 108100216 -34171228 - AluSg SINE Alu -1 309 1 1774 215 128 51 chr9 108100216 108100399 -34171045 - L1ME1 LINE L1 -513 5653 5485 1881 207 30 115 chr9 108100644 108100711 -34170733 + L1M4 LINE L1 4342 4413 -1733 1867 157 3 20 chr9 108100711 108101016 -34170428 + AluJb SINE Alu 1 300 -12 1881 207 30 115 chr9 108101016 108101094 -34170350 + L1M4 LINE L1 4413 4496 -1650 2278 105 0 0 chr9 108101094 108101389 -34170055 + AluSx SINE Alu 1 295 -17 1881 207 30 115 chr9 108101389 108101452 -34169992 + L1M4 LINE L1 4496 4563 -1583 2209 113 3 0 chr9 108101452 108101745 -34169699 + AluSx SINE Alu 1 294 -18 1881 207 30 115 chr9 108101745 108102255 -34169189 + L1M4 LINE L1 4563 4978 -1168 1922 169 6 16 chr9 108102255 108102569 -34168875 + AluJb SINE Alu 1 311 -1 1881 207 30 115 chr9 108102569 108102716 -34168728 + L1M4 LINE L1 4978 5136 -1010 * 5430 236 32 29 chr9 108102708 108105105 -34166339 + L1M2a LINE L1 400 2908 -4658 1287 179 3 83 chr9 108105110 108105400 -34166044 + AluJo SINE Alu 24 290 -22 5447 224 41 17 chr9 108105412 108107937 -34163507 + L1M2a LINE L1 2586 5184 -2381 238 125 42 0 chr9 108107931 108107979 -34163465 + L1M2 LINE L1 5712 5761 -539 * 8744 65 5 11 chr9 108108022 108108323 -34163121 + L1PA5 LINE L1 2631 2932 -3214 7030 57 0 2 chr9 108108323 108109981 -34161463 + L1PA5 LINE L1 4509 6164 0 8744 65 5 11 chr9 108109981 108110914 -34160530 + L1PA5 LINE L1 2932 3859 -2287 2126 99 0 3 chr9 108111434 108111739 -34159705 - AluSx SINE Alu 0 305 2 1765 138 57 27 chr9 108112091 108112389 -34159055 - AluJo SINE Alu -5 307 1 22 56 0 0 chr9 108112667 108112703 -34158741 + AT_rich Low_complexity Low_complexity 1 36 0 885 196 56 0 chr9 108112833 108113012 -34158432 + MER5A DNA MER1_type 1 189 0 26 98 0 0 chr9 108113535 108113617 -34157827 + AT_rich Low_complexity Low_complexity 1 82 0 344 281 42 95 chr9 108114025 108114246 -34157198 - L1MEd LINE L1 -4914 1205 1003 2133 125 6 3 chr9 108114246 108114557 -34156887 - AluSx SINE Alu 0 312 1 344 281 42 95 chr9 108114557 108114641 -34156803 - L1MEd LINE L1 -5116 1003 916 324 0 0 0 chr9 108115046 108115082 -34156362 + (CA)n Simple_repeat Simple_repeat 1 36 0 2052 115 35 0 chr9 108115096 108115382 -34156062 - AluSq SINE Alu -17 296 1 264 242 158 11 chr9 108115531 108115626 -34155818 - MIR SINE MIR -66 142 34 304 205 96 12 chr9 108115655 108115738 -34155706 + MER91C DNA MER1_type 27 116 -24 334 358 69 16 chr9 108115748 108115994 -34155450 - HAL1 LINE L1 -1423 1084 826 1422 98 30 55 chr9 108116014 108116250 -34155194 - MER30 DNA MER1_type 0 230 1 25 0 0 0 chr9 108117117 108117142 -34154302 + AT_rich Low_complexity Low_complexity 1 25 0 2086 128 0 7 chr9 108117159 108117465 -34153979 - AluSx SINE Alu -8 304 1 34 65 0 0 chr9 108117466 108117528 -34153916 + AT_rich Low_complexity Low_complexity 1 62 0 290 265 61 15 chr9 108118121 108118253 -34153191 - MIR SINE MIR -26 236 99 317 178 14 27 chr9 108118382 108118455 -34152989 - L2 LINE L2 -1050 2264 2193 275 308 34 34 chr9 108119442 108119588 -34151856 + MIR3 SINE MIR 48 193 -15 850 264 192 22 chr9 108120148 108120277 -34151167 + L2 LINE L2 2543 2649 -664 2092 98 20 24 chr9 108120277 108120574 -34150870 + AluSg SINE Alu 1 296 -14 850 264 192 22 chr9 108120574 108120585 -34150859 + L2 LINE L2 2649 2657 -656 1725 106 138 33 chr9 108120585 108120860 -34150584 + AluSq SINE Alu 1 304 -9 850 264 192 22 chr9 108120860 108121333 -34150111 + L2 LINE L2 2657 3262 -51 352 193 68 45 chr9 108122329 108122417 -34149027 - L2 LINE L2 0 3272 3183 202 205 0 0 chr9 108123516 108123555 -34147889 + MIR SINE MIR 37 75 -187 611 319 112 37 chr9 108124283 108124364 -34147080 - L2 LINE L2 -1 3271 3197 189 0 0 0 chr9 108124364 108124385 -34147059 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 611 319 112 37 chr9 108124385 108124704 -34146740 - L2 LINE L2 -75 3197 2841 922 190 38 11 chr9 108125218 108125402 -34146042 - MER5A DNA MER1_type 0 189 1 808 260 10 10 chr9 108125633 108125829 -34145615 - MIR SINE MIR -1 261 66 968 205 160 18 chr9 108127071 108127371 -34144073 + MLT1J1 LTR MaLR 19 368 -82 2379 168 5 41 chr9 108128043 108128193 -34143251 - ERVL LTR ERVL -1161 4603 4449 1862 182 107 0 chr9 108128193 108128578 -34142866 + MSTB LTR MaLR 1 426 0 2379 168 5 41 chr9 108128578 108128862 -34142582 - ERVL LTR ERVL -1315 4449 4185 885 227 19 8 chr9 108128862 108129118 -34142326 - L1 LINE L1 -1489 4657 4399 1931 147 21 88 chr9 108129124 108129545 -34141899 - MLT2C1 LTR ERVL 0 397 5 1383 255 12 16 chr9 108129743 108130174 -34141270 + L1M4 LINE L1 4740 5168 -978 10339 149 18 14 chr9 108130174 108131835 -34139609 + L1PA15 LINE L1 13 1679 -5886 1765 148 0 8 chr9 108131835 108132099 -34139345 + AluJb SINE Alu 36 297 -15 7829 96 28 21 chr9 108132108 108133485 -34137959 + L1PA15 LINE L1 2418 3809 -3756 2337 170 106 13 chr9 108133586 108135049 -34136395 + SATR1 Satellite Satellite 1 1598 -7 7464 191 64 9 chr9 108135049 108136683 -34134761 + L1PA15 LINE L1 5000 6724 -841 41589 60 2 2 chr9 108136692 108142833 -34128611 + L1PA5 LINE L1 11 6154 0 2088 119 91 0 chr9 108142833 108143179 -34128265 + L1PA16 LINE L1 5769 6152 -14 263 91 0 23 chr9 108143233 108143277 -34128167 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1996 125 0 27 chr9 108143400 108143696 -34127748 + AluSx SINE Alu 9 296 -16 1931 190 82 49 chr9 108143717 108143861 -34127583 + L1PA15 LINE L1 6744 6882 -701 2179 94 28 0 chr9 108143861 108144149 -34127295 + AluSx SINE Alu 5 300 -12 1931 190 82 49 chr9 108144149 108144758 -34126686 + L1PA15 LINE L1 6882 7573 -10 42494 34 22 1 chr9 108144824 108150843 -34120601 + L1PA2 LINE L1 4 6150 -5 192 40 0 0 chr9 108150847 108150872 -34120572 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 801 296 97 6 chr9 108150937 108151248 -34120196 + L2 LINE L2 2970 3308 -5 543 230 96 22 chr9 108154346 108154524 -34116920 - MIR SINE MIR -7 255 65 401 174 58 0 chr9 108155168 108155254 -34116190 + L1MB5 LINE L1 6084 6174 0 330 295 72 31 chr9 108155282 108155475 -34115969 + L1ME LINE L1 3 203 -5867 192 350 33 0 chr9 108155981 108156041 -34115403 - L2 LINE L2 -92 3180 3119 295 352 46 0 chr9 108157545 108157653 -34113791 - L2 LINE L2 -2 3311 3199 322 220 87 100 chr9 108158111 108158261 -34113183 + L1MB8 LINE L1 4561 4708 -1438 814 214 39 95 chr9 108158298 108158362 -34113082 - L1MC/D LINE L1 -753 5393 5327 1674 139 8 0 chr9 108158362 108158606 -34112838 + AluJb SINE Alu 52 297 -15 814 214 39 95 chr9 108158606 108158966 -34112478 - L1MC/D LINE L1 -819 5327 5122 5069 239 51 15 chr9 108158967 108160641 -34110803 + L1M4 LINE L1 3080 4814 -1332 6409 218 39 28 chr9 108160742 108163145 -34108299 - L1PA12 LINE L1 -4337 3247 9 830 193 47 24 chr9 108163154 108163597 -34107847 + L1MB8 LINE L1 4715 5146 -1032 2114 110 34 0 chr9 108163597 108163889 -34107555 - AluSx SINE Alu -10 302 1 830 193 47 24 chr9 108163889 108164655 -34106789 + L1MB8 LINE L1 5146 6144 -34 2053 99 85 57 chr9 108164655 108165009 -34106435 + THE1B LTR MaLR 1 364 0 830 193 47 24 chr9 108165009 108165045 -34106399 + L1MB8 LINE L1 6144 6178 0 315 265 44 81 chr9 108165450 108165586 -34105858 - MIR3 SINE MIR -41 167 37 268 289 0 13 chr9 108165664 108165740 -34105704 - MIR3 SINE MIR -5 203 129 20514 42 1 1 chr9 108166322 108169644 -34101800 + L1PA4 LINE L1 2820 6154 -1 24 0 0 0 chr9 108169644 108169668 -34101776 + AT_rich Low_complexity Low_complexity 1 24 0 28 61 0 0 chr9 108170021 108170070 -34101374 + AT_rich Low_complexity Low_complexity 1 49 0 440 167 0 0 chr9 108170440 108170512 -34100932 + MER63 DNA MER1_type 672 743 -93 628 179 0 51 chr9 108170756 108170873 -34100571 + FRAM SINE Alu 21 131 -45 230 330 29 68 chr9 108173003 108173106 -34098338 - MER91A DNA MER1_type -95 101 3 24 0 0 0 chr9 108175362 108175386 -34096058 + AT_rich Low_complexity Low_complexity 1 24 0 2072 105 10 7 chr9 108175590 108175886 -34095558 + AluSp SINE Alu 1 297 -16 769 261 34 25 chr9 108176051 108176289 -34095155 + MIR SINE MIR 23 262 0 337 223 110 10 chr9 108176302 108176446 -34094998 + L1ME3A LINE L1 5720 5875 -287 303 256 202 35 chr9 108176505 108176763 -34094681 - L1ME3A LINE L1 -231 5939 5639 2125 153 31 69 chr9 108177079 108177529 -34093915 - Tigger2a DNA MER2_type -1 433 1 1336 249 88 40 chr9 108179045 108179644 -34091800 + L1MC5 LINE L1 6488 6975 -833 2921 183 65 136 chr9 108179644 108181104 -34090340 - MER52A LTR ERV1 0 1278 56 300 254 0 0 chr9 108181299 108181366 -34090078 - MER52A LTR ERV1 -1688 67 1 406 202 97 18 chr9 108181366 108181480 -34089964 + L1MC5 LINE L1 7116 7238 -723 502 269 47 31 chr9 108181494 108181687 -34089757 + L1MC5 LINE L1 7290 7485 -476 1841 153 24 0 chr9 108181874 108182169 -34089275 + AluSx SINE Alu 1 302 -10 1646 158 91 0 chr9 108182239 108182524 -34088920 - AluJb SINE Alu 0 312 2 225 287 75 0 chr9 108182524 108182618 -34088826 + L1ME3A LINE L1 6040 6140 -30 2165 103 0 0 chr9 108182624 108182930 -34088514 - AluSx SINE Alu 0 306 1 220 235 0 39 chr9 108184464 108184515 -34086929 - L2 LINE L2 -9 3304 3256 250 167 62 0 chr9 108185099 108185147 -34086297 + AluJo SINE Alu 85 135 -167 744 286 164 42 chr9 108185184 108185625 -34085819 - L2 LINE L2 -100 3213 2669 1288 241 82 6 chr9 108185625 108185944 -34085500 + MER2 DNA MER2_type 2 344 0 744 286 164 42 chr9 108185944 108186102 -34085342 - L2 LINE L2 -644 2669 2532 457 271 128 46 chr9 108186268 108186486 -34084958 + MIR SINE MIR 11 246 -16 25 51 0 0 chr9 108186659 108186698 -34084746 + AT_rich Low_complexity Low_complexity 1 39 0 1768 108 0 4 chr9 108187011 108187243 -34084201 + AluSx SINE Alu 1 231 -81 3180 88 86 15 chr9 108187249 108187724 -34083720 + LTR61 LTR ERV1 87 595 0 322 200 13 13 chr9 108187724 108187793 -34083651 + AluSc SINE Alu 226 294 -5 2273 98 7 0 chr9 108187890 108188186 -34083258 + AluSx SINE Alu 1 298 -14 723 179 153 134 chr9 108188952 108189148 -34082296 + L1MC4 LINE L1 7225 7416 -626 2343 98 0 0 chr9 108189148 108189445 -34081999 - AluSg SINE Alu -13 297 1 723 179 153 134 chr9 108189445 108189628 -34081816 + L1MC4 LINE L1 7416 7611 -431 1023 133 0 0 chr9 108189654 108189841 -34081603 - AluSx SINE Alu 0 318 132 2690 46 25 9 chr9 108189841 108190168 -34081276 - L1PA2 LINE L1 -1 6154 5823 5124 19 0 0 chr9 108190168 108190750 -34080694 + L1PA3 LINE L1 5282 5863 -292 1069 103 0 0 chr9 108190750 108190886 -34080558 - AluSx SINE Alu -177 136 1 1638 164 11 21 chr9 108191104 108191417 -34080027 + AluJo SINE Alu 1 310 0 1013 97 0 22 chr9 108192022 108192156 -34079288 - FLAM_C SINE Alu -2 131 1 1210 300 79 0 chr9 108192156 108192573 -34078871 + ERVL LTR ERVL 2091 2540 -3224 470 293 68 24 chr9 108192658 108192863 -34078581 + ERVL LTR ERVL 2619 2832 -2164 728 206 248 8 chr9 108192875 108193113 -34078331 - LTR50 LTR ERVL -13 782 488 376 204 184 0 chr9 108193175 108193273 -34078171 + L1ME3A LINE L1 6020 6135 -35 395 289 92 7 chr9 108193574 108193726 -34077718 + MIR SINE MIR 36 200 -62 226 318 76 0 chr9 108193861 108193927 -34077517 + L2 LINE L2 3234 3304 -9 505 284 94 68 chr9 108195050 108195879 -34075565 + L1ME1 LINE L1 3291 4167 -1979 293 198 99 12 chr9 108195882 108195963 -34075481 - LTR67 LTR ERVL -11 546 459 422 268 101 86 chr9 108196155 108196551 -34074893 + L1ME1 LINE L1 4978 5379 -767 257 235 0 0 chr9 108196786 108196837 -34074607 - Charlie1b DNA MER1_type -2 521 471 467 273 82 16 chr9 108196839 108197033 -34074411 + L1ME1 LINE L1 5958 6164 -2 487 176 36 73 chr9 108197041 108197137 -34074307 - Charlie1b DNA MER1_type -2284 477 388 1921 139 194 11 chr9 108197137 108197519 -34073925 + LTR47A LTR ERVL 1 452 0 487 176 36 73 chr9 108197519 108197587 -34073857 - Charlie1b DNA MER1_type -2373 388 319 1410 61 35 30 chr9 108197589 108197811 -34073633 + AluSg/x SINE Alu 85 307 0 1264 167 139 14 chr9 108197812 108198093 -34073351 - Charlie1b DNA MER1_type -198 325 10 180 315 170 32 chr9 108199800 108200111 -34071333 - L2 LINE L2 -6 3307 2954 238 206 143 63 chr9 108200147 108200210 -34071234 - MIR SINE MIR -188 74 7 288 305 0 12 chr9 108200724 108200806 -34070638 - L2 LINE L2 -1 3312 3232 2111 103 30 3 chr9 108201117 108201417 -34070027 - AluSg SINE Alu -2 308 1 2122 89 7 33 chr9 108202287 108202617 -34068827 - AluSq SINE Alu 0 313 1 819 183 78 91 chr9 108202693 108202810 -34068634 - MER20 DNA MER1_type -3 216 102 186 43 0 0 chr9 108202810 108202833 -34068611 + (CA)n Simple_repeat Simple_repeat 1 23 0 819 183 78 91 chr9 108202833 108202934 -34068510 - MER20 DNA MER1_type -117 102 1 1100 116 0 177 chr9 108203211 108203488 -34067956 - L1MA4 LINE L1 0 6300 6073 922 150 0 0 chr9 108204606 108204739 -34066705 + FLAM_C SINE Alu 1 133 0 187 53 26 26 chr9 108204798 108204836 -34066608 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2099 103 29 0 chr9 108204838 108205119 -34066325 - AluSx SINE Alu -23 289 1 1119 165 6 0 chr9 108205427 108205609 -34065835 - AluSq SINE Alu 0 313 131 23 0 0 0 chr9 108205612 108205635 -34065809 + AT_rich Low_complexity Low_complexity 1 23 0 460 206 48 32 chr9 108206186 108206312 -34065132 + L1ME3A LINE L1 4681 4808 -1338 1777 174 7 0 chr9 108206815 108207103 -34064341 + AluJo SINE Alu 2 291 -21 3204 38 3 5 chr9 108208014 108208383 -34063061 - L1PA8 LINE L1 -1 6171 5804 2304 104 0 0 chr9 108208601 108208900 -34062544 + AluSc SINE Alu 1 299 -10 439 312 45 0 chr9 108208900 108209057 -34062387 + MIR SINE MIR 99 262 0 615 322 77 4 chr9 108209169 108209402 -34062042 + MIR SINE MIR 13 262 0 203 267 0 0 chr9 108209662 108209722 -34061722 + T-rich Low_complexity Low_complexity 1 60 0 2495 227 95 64 chr9 108210396 108210496 -34060948 + L1ME3A LINE L1 5102 5197 -973 2070 136 0 3 chr9 108210496 108210804 -34060640 + AluJb SINE Alu 1 307 -5 2495 227 95 64 chr9 108210804 108211735 -34059709 + L1ME3A LINE L1 5197 6160 -10 1942 137 10 3 chr9 108211743 108212042 -34059402 + AluSx SINE Alu 1 301 -11 186 43 0 0 chr9 108212182 108212205 -34059239 + (CCTAT)n Simple_repeat Simple_repeat 1 23 0 192 135 0 0 chr9 108212454 108212491 -34058953 + (T)n Simple_repeat Simple_repeat 1 37 0 186 244 231 0 chr9 108213044 108213122 -34058322 - L2 LINE L2 -94 3219 3124 268 164 91 0 chr9 108213419 108213474 -34057970 - LTR29 LTR ERV1 -2 620 561 * 1380 84 0 185 chr9 108213467 108213753 -34057691 - MER39B LTR ERV1 -420 233 1 201 287 20 59 chr9 108216192 108216293 -34055151 + MIR SINE MIR 90 186 -76 2098 141 0 6 chr9 108216369 108216681 -34054763 + AluJo SINE Alu 2 311 -1 318 292 83 50 chr9 108216769 108216889 -34054555 + L2 LINE L2 3182 3305 -8 278 326 97 14 chr9 108218501 108218645 -34052799 + MIR SINE MIR 33 188 -74 1675 116 0 0 chr9 108218934 108219167 -34052277 - AluSp SINE Alu 0 313 81 593 182 19 88 chr9 108219761 108219920 -34051524 + LTR33 LTR ERVL 55 202 -319 441 256 124 26 chr9 108220545 108220798 -34050646 + L1MC4a LINE L1 5129 5356 -935 2207 142 37 54 chr9 108220798 108221208 -34050236 + MER57A LTR ERV1 1 403 0 441 256 124 26 chr9 108221208 108221566 -34049878 + L1MC4a LINE L1 5356 5678 -613 2086 112 46 23 chr9 108221566 108221870 -34049574 + AluSx SINE Alu 1 311 -1 441 256 124 26 chr9 108221870 108221925 -34049519 + L1MC4a LINE L1 5678 5410 -881 1833 152 28 101 chr9 108221925 108222320 -34049124 - MER47A DNA MER2_type 0 366 1 441 256 124 26 chr9 108222320 108222476 -34048968 + L1MC4a LINE L1 5409 5548 -743 23 0 0 0 chr9 108222693 108222716 -34048728 + AT_rich Low_complexity Low_complexity 1 23 0 1000 68 0 0 chr9 108222888 108223005 -34048439 + L1PA7 LINE L1 6030 6146 -8 405 209 62 177 chr9 108224767 108225023 -34046421 + MIR SINE MIR 21 243 -19 888 161 0 0 chr9 108225028 108225158 -34046286 + FLAM_C SINE Alu 3 132 -1 2301 86 0 0 chr9 108225291 108225593 -34045851 - AluSc SINE Alu 0 302 1 1567 126 35 47 chr9 108226648 108226902 -34044542 + AluJo SINE Alu 6 256 -56 418 220 29 104 chr9 108227679 108227852 -34043592 + MIR3 SINE MIR 9 168 -40 1877 115 61 4 chr9 108227920 108228199 -34043245 - AluSx SINE Alu -13 299 5 778 194 8 0 chr9 108228492 108228621 -34042823 - FLAM_A SINE Alu -3 130 1 2275 102 0 0 chr9 108230537 108230841 -34040603 - AluSx SINE Alu -8 304 1 2269 119 0 0 chr9 108232082 108232393 -34039051 - AluSx SINE Alu -1 311 1 530 291 108 40 chr9 108232403 108232681 -34038763 + L3 LINE CR1 931 1227 -350 757 256 88 13 chr9 108233188 108233415 -34038029 + MIR SINE MIR 9 252 -10 2014 113 7 45 chr9 108233423 108233733 -34037711 + AluSx SINE Alu 1 298 -14 414 0 0 0 chr9 108233885 108233931 -34037513 + (TG)n Simple_repeat Simple_repeat 2 47 0 2202 99 7 7 chr9 108234076 108234368 -34037076 - AluSc SINE Alu -12 297 6 204 229 104 0 chr9 108234633 108234681 -34036763 - L2 LINE L2 -13 3259 3207 194 344 0 0 chr9 108234800 108234861 -34036583 + MIR3 SINE MIR 138 198 -10 517 101 34 22 chr9 108234877 108234966 -34036478 - AluSp/q SINE Alu -16 297 208 1758 119 4 0 chr9 108234966 108235209 -34036235 - AluSq SINE Alu -69 244 1 200 217 0 0 chr9 108235567 108235613 -34035831 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 492 158 10 40 chr9 108235978 108236079 -34035365 - Charlie4a DNA MER1_type -3 505 408 * 1318 226 82 10 chr9 108236078 108236493 -34034951 - Charlie4a DNA MER1_type -50 458 14 246 200 13 40 chr9 108237832 108237907 -34033537 + (CCG)n Simple_repeat Simple_repeat 2 74 0 252 276 20 109 chr9 108238239 108238395 -34033049 + MER5A DNA MER1_type 27 189 0 1237 227 66 7 chr9 108238477 108238841 -34032603 + L2 LINE L2 2625 3009 -304 628 190 0 8 chr9 108238840 108238961 -34032483 - L2 LINE L2 -1 3312 3193 * 373 271 102 40 chr9 108238954 108239030 -34032414 + L2 LINE L2 3002 3072 -241 * 1041 171 12 0 chr9 108239030 108239200 -34032244 + FAM SINE Alu 1 172 -3 373 271 102 40 chr9 108239200 108239211 -34032233 + L2 LINE L2 3072 3081 -232 378 0 0 0 chr9 108239211 108239253 -34032191 + (CA)n Simple_repeat Simple_repeat 1 42 0 373 271 102 40 chr9 108239253 108239341 -34032103 + L2 LINE L2 3081 3189 -124 609 265 128 15 chr9 108239477 108239681 -34031763 + MIR SINE MIR 8 234 -28 184 314 20 0 chr9 108239652 108239703 -34031741 + L2 LINE L2 3210 3261 -11 * 573 262 160 32 chr9 108239804 108239926 -34031518 + MLT1I LTR MaLR 59 164 -245 1990 118 4 11 chr9 108239926 108240205 -34031239 + AluSx SINE Alu 1 277 -35 573 262 160 32 chr9 108240205 108240364 -34031080 + MLT1I LTR MaLR 164 376 -33 227 235 20 0 chr9 108240704 108240755 -34030689 - MER115 DNA AcHobo -9 684 633 548 251 14 36 chr9 108240757 108241048 -34030396 - MER115 DNA AcHobo -258 435 4 2026 126 25 0 chr9 108241251 108241536 -34029908 + AluSx SINE Alu 1 292 -20 744 145 0 58 chr9 108242378 108242516 -34028928 - FLAM_C SINE Alu -5 138 9 258 282 14 0 chr9 108242688 108242759 -34028685 + (TCCA)n Simple_repeat Simple_repeat 4 75 0 260 228 61 35 chr9 108242955 108243069 -34028375 - L1P LINE L1 -2840 3306 3190 234 311 28 28 chr9 108243365 108243542 -34027902 - L1M4 LINE L1 -3314 2832 2656 329 268 98 27 chr9 108244024 108244136 -34027308 + L2 LINE L2 3191 3310 -3 2633 53 0 0 chr9 108244245 108244549 -34026895 - AluY SINE Alu -7 304 1 200 260 10 62 chr9 108244590 108244686 -34026758 - L2 LINE L2 -649 2665 2575 22 0 0 0 chr9 108244804 108244826 -34026618 + AT_rich Low_complexity Low_complexity 1 22 0 549 259 68 63 chr9 108245396 108245601 -34025843 + MIR SINE MIR 2 207 -55 425 304 76 40 chr9 108248782 108249006 -34022438 - MIR SINE MIR -8 254 23 443 154 77 0 chr9 108249050 108249141 -34022303 - MER3 DNA MER1_type -47 162 65 2524 169 29 35 chr9 108249930 108250534 -34020910 - L1MC/D LINE L1 -743 5403 4797 1680 168 3 19 chr9 108250534 108250843 -34020601 + AluJo SINE Alu 1 304 -8 2524 169 29 35 chr9 108250843 108250986 -34020458 - L1MC/D LINE L1 -1349 4797 4760 2194 152 18 28 chr9 108250986 108251380 -34020064 - MLT1B LTR MaLR 0 390 1 2524 169 29 35 chr9 108251380 108251436 -34020008 - L1MC/D LINE L1 -1386 4760 4705 27 0 0 0 chr9 108251459 108251486 -34019958 + AT_rich Low_complexity Low_complexity 1 27 0 221 264 23 0 chr9 108251569 108251629 -34019815 + MIR SINE MIR 112 172 -90 2316 235 74 22 chr9 108251743 108252220 -34019224 - L1MC/D LINE L1 -1491 4655 4115 243 0 0 0 chr9 108252220 108252247 -34019197 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2316 235 74 22 chr9 108252247 108252593 -34018851 - L1MC/D LINE L1 -2031 4115 3789 649 245 7 13 chr9 108252678 108252833 -34018611 + MER90 LTR ERV1 453 606 -8 2166 130 0 7 chr9 108253546 108253854 -34017590 - AluSx SINE Alu -2 310 5 434 297 153 5 chr9 108254594 108254796 -34016648 - MIR SINE MIR -11 251 20 194 289 183 35 chr9 108255945 108256087 -34015357 + MIR3 SINE MIR 30 192 -16 23 68 0 0 chr9 108257886 108257930 -34013514 + AT_rich Low_complexity Low_complexity 1 44 0 181 343 0 41 chr9 108258629 108258702 -34012742 + L2 LINE L2 3181 3250 -22 360 242 11 11 chr9 108259322 108259413 -34012031 + MLT1K LTR MaLR 199 289 -299 2170 123 0 7 chr9 108259693 108260003 -34011441 + AluSx SINE Alu 1 308 -4 41 0 0 0 chr9 108261657 108261698 -34009746 + AT_rich Low_complexity Low_complexity 1 41 0 7748 18 0 0 chr9 108261698 108262655 -34008789 - L1PA2 LINE L1 -4 6151 5196 352 291 12 60 chr9 108262786 108262977 -34008467 - L1M4 LINE L1 -1978 4168 3996 2073 128 10 0 chr9 108262977 108263275 -34008169 - AluSx SINE Alu -11 301 1 352 291 12 60 chr9 108263275 108263402 -34008042 - L1M4 LINE L1 -2150 3996 3865 339 314 113 60 chr9 108263450 108263803 -34007641 - L1M4 LINE L1 -2402 3744 3373 3950 46 0 16 chr9 108263913 108264410 -34007034 - L1PA5 LINE L1 0 6154 5666 599 159 9 18 chr9 108264912 108265025 -34006419 - AluJo SINE Alu -176 136 25 1908 188 52 28 chr9 108265059 108265560 -34005884 - L1ME2 LINE L1 -10 6154 5642 523 152 11 0 chr9 108266568 108266660 -34004784 + L1MD3 LINE L1 7730 7822 -173 419 262 74 25 chr9 108266687 108266860 -34004584 + L1ME3A LINE L1 5022 5208 -938 2019 144 27 0 chr9 108266860 108267159 -34004285 + AluSx SINE Alu 6 312 0 419 262 74 25 chr9 108267159 108267187 -34004257 + L1ME3A LINE L1 5208 5233 -913 2094 237 63 39 chr9 108267244 108267547 -34003897 + L1ME3A LINE L1 5348 5642 -528 1846 175 52 6 chr9 108267547 108267896 -34003548 + MLT1A1 LTR MaLR 1 365 0 2094 237 63 39 chr9 108267896 108268388 -34003056 + L1ME3A LINE L1 5642 6162 -8 328 308 185 5 chr9 108269075 108269270 -34002174 - MIR SINE MIR -5 257 28 1640 193 26 13 chr9 108269476 108269781 -34001663 - AluJb SINE Alu -3 309 1 532 267 60 22 chr9 108269940 108270172 -34001272 + L1ME LINE L1 5504 5744 -377 188 320 77 26 chr9 108270356 108270434 -34001010 + L2 LINE L2 3139 3220 -52 573 250 14 20 chr9 108270752 108270900 -34000544 + MIR SINE MIR 116 262 0 198 143 0 0 chr9 108271292 108271327 -34000117 + (TAA)n Simple_repeat Simple_repeat 1 35 0 358 289 39 0 chr9 108271335 108271439 -34000005 - MIR SINE MIR -1 261 154 * 424 323 41 64 chr9 108271431 108271651 -33999793 + MIR SINE MIR 21 235 -27 954 288 99 31 chr9 108272073 108272678 -33998766 + L1MC4a LINE L1 5521 6166 -1642 423 0 0 0 chr9 108273304 108273351 -33998093 + (CTA)n Simple_repeat Simple_repeat 1 47 0 834 256 10 0 chr9 108273399 108273594 -33997850 - MIR SINE MIR -36 226 30 482 210 0 30 chr9 108273591 108273691 -33997753 + MIR SINE MIR 154 250 -12 * 23 0 0 0 chr9 108274252 108274275 -33997169 + AT_rich Low_complexity Low_complexity 1 23 0 371 219 219 0 chr9 108274312 108274449 -33996995 + MER104 DNA Tc2 14 180 0 421 317 49 21 chr9 108274800 108274942 -33996502 + L2 LINE L2 3121 3266 -6 26 64 0 0 chr9 108274973 108275020 -33996424 + AT_rich Low_complexity Low_complexity 1 47 0 2340 42 42 7 chr9 108275051 108275339 -33996105 - AluY SINE Alu -13 298 1 305 25 0 0 chr9 108275792 108275832 -33995612 - MADE1 DNA Mariner -37 43 4 645 158 9 18 chr9 108276251 108276365 -33995079 - FLAM_A SINE Alu -8 134 22 22 0 0 0 chr9 108276407 108276429 -33995015 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr9 108276995 108277038 -33994406 + AT_rich Low_complexity Low_complexity 1 43 0 442 227 21 0 chr9 108277328 108277425 -33994019 - MER94 DNA DNA -35 99 1 21 0 0 0 chr9 108277832 108277853 -33993591 + AT_rich Low_complexity Low_complexity 1 21 0 2013 159 56 21 chr9 108277920 108278450 -33992994 + Tigger7 DNA MER2_type 2 2587 0 2110 147 7 0 chr9 108278943 108279250 -33992194 + AluSx SINE Alu 1 309 -3 404 236 57 64 chr9 108280436 108280576 -33990868 + L2 LINE L2 3175 3313 0 220 345 150 9 chr9 108280860 108280973 -33990471 + MIR SINE MIR 16 144 -64 2027 143 0 10 chr9 108281143 108281444 -33990000 - AluSx SINE Alu -14 298 1 21 82 0 0 chr9 108281524 108281573 -33989871 + AT_rich Low_complexity Low_complexity 1 49 0 6006 85 29 12 chr9 108281579 108282080 -33989364 + L1PA13 LINE L1 4991 5482 -681 279 0 0 0 chr9 108282080 108282111 -33989333 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 6006 85 29 12 chr9 108282111 108282772 -33988672 + L1PA13 LINE L1 5482 6162 -1 251 271 143 0 chr9 108282979 108283049 -33988395 - MIR SINE MIR -58 150 71 1726 240 74 56 chr9 108283622 108284189 -33987255 + L1MC4a LINE L1 6443 7019 -789 * 2044 236 95 10 chr9 108284169 108284782 -33986662 + L1MC4 LINE L1 7238 7902 -140 24 0 0 0 chr9 108284826 108284850 -33986594 + AT_rich Low_complexity Low_complexity 1 24 0 206 358 127 30 chr9 108284979 108285113 -33986331 - L2 LINE L2 -22 3250 3104 1236 101 0 0 chr9 108286336 108286530 -33984914 + L1PA8 LINE L1 5991 6184 0 21 0 0 0 chr9 108286711 108286732 -33984712 + AT_rich Low_complexity Low_complexity 1 21 0 185 0 40 0 chr9 108287421 108287446 -33983998 + (TA)n Simple_repeat Simple_repeat 2 27 0 305 297 82 78 chr9 108287828 108288084 -33983360 - L1ME3A LINE L1 -22 6148 5892 3513 91 23 6 chr9 108288085 108288613 -33982831 - L1MA3 LINE L1 0 6305 5769 499 263 69 73 chr9 108289005 108289155 -33982289 - L1ME3A LINE L1 -254 5916 5766 2113 124 0 3 chr9 108289155 108289454 -33981990 - AluSx SINE Alu -14 298 1 499 263 69 73 chr9 108289454 108289535 -33981909 - L1ME3A LINE L1 -404 5766 5686 1906 135 37 17 chr9 108290159 108290456 -33980988 + AluJb SINE Alu 1 303 -9 1973 106 0 15 chr9 108291304 108291578 -33979866 + AluSx SINE Alu 38 307 -5 1235 255 144 8 chr9 108291721 108292332 -33979112 + MER20B DNA MER1_type 2 758 -25 260 241 13 25 chr9 108292338 108292417 -33979027 + HAL1 LINE L1 657 734 -1773 261 239 183 0 chr9 108292425 108292496 -33978948 + MLT1L LTR MaLR 308 391 -224 1834 230 43 45 chr9 108294022 108294338 -33977106 + L1M4 LINE L1 3353 3668 -2478 2080 69 6 94 chr9 108294338 108294657 -33976787 + AluSx SINE Alu 16 306 -6 1834 230 43 45 chr9 108294657 108295010 -33976434 + L1M4 LINE L1 3668 4021 -2125 683 210 34 15 chr9 108295008 108295173 -33976271 - L1ME3A LINE L1 -850 5296 5125 * 189 0 0 0 chr9 108295173 108295194 -33976250 + (TG)n Simple_repeat Simple_repeat 2 22 0 683 210 34 15 chr9 108295194 108295233 -33976211 - L1ME3A LINE L1 -1021 5125 5088 772 308 142 58 chr9 108295316 108295914 -33975530 - L3 LINE CR1 -861 716 69 241 294 28 46 chr9 108297219 108297328 -33974116 + MIR SINE MIR 119 225 -37 288 272 114 18 chr9 108297927 108298041 -33973403 - MIR SINE MIR -7 255 131 215 317 108 67 chr9 108298369 108298489 -33972955 + L2 LINE L2 3143 3267 -5 2238 138 117 2 chr9 108298789 108299208 -33972236 - L1MB7 LINE L1 -11 6173 5707 5444 233 125 35 chr9 108299227 108299383 -33972061 + L2 LINE L2 1040 1180 -2133 1585 168 63 8 chr9 108299383 108299651 -33971793 - AluJb SINE Alu -29 283 1 5444 233 125 35 chr9 108299651 108300681 -33970763 + L2 LINE L2 1180 2115 -1198 2558 139 19 12 chr9 108300681 108301106 -33970338 + MSTA LTR MaLR 1 428 0 8481 153 75 8 chr9 108301106 108301470 -33969974 + MSTA-int LTR MaLR 1 339 -1312 2085 140 10 0 chr9 108301470 108301770 -33969674 - AluSq SINE Alu -10 303 1 8481 153 75 8 chr9 108301770 108302953 -33968491 + MSTA-int LTR MaLR 339 1651 0 2950 112 9 9 chr9 108302953 108303381 -33968063 + MSTA LTR MaLR 1 428 0 5444 233 125 35 chr9 108303381 108303678 -33967766 + L2 LINE L2 2115 2384 -929 1905 146 44 52 chr9 108303678 108304041 -33967403 - THE1B LTR MaLR 0 364 5 5444 233 125 35 chr9 108304041 108304351 -33967093 + L2 LINE L2 2384 3000 -313 291 290 38 46 chr9 108304348 108304479 -33966965 + L2 LINE L2 2933 3062 -210 * 2132 115 0 14 chr9 108304616 108304911 -33966533 - AluSx SINE Alu -21 291 1 598 188 128 0 chr9 108304934 108305067 -33966377 - MER69 DNA AcHobo -1076 150 1 945 244 81 12 chr9 108305111 108305357 -33966087 - LTR33 LTR ERVL -256 265 3 291 228 0 0 chr9 108305658 108305715 -33965729 + L2 LINE L2 3254 3310 -3 219 372 150 0 chr9 108307519 108307632 -33963812 + L2 LINE L2 3138 3267 -5 1694 153 36 4 chr9 108308690 108308971 -33962473 - AluJo SINE Alu -12 300 11 1660 185 7 4 chr9 108309304 108309585 -33961859 - AluJb SINE Alu -26 286 5 22 35 0 0 chr9 108309842 108309871 -33961573 + AT_rich Low_complexity Low_complexity 1 29 0 786 286 57 4 chr9 108309871 108310119 -33961325 - MIR SINE MIR 0 262 2 251 305 10 10 chr9 108310202 108310320 -33961124 + L1ME LINE L1 4902 5019 -1127 228 186 0 0 chr9 108310632 108310675 -33960769 + L1ME LINE L1 5376 5418 -2390 474 301 120 5 chr9 108310740 108310949 -33960495 + MIR SINE MIR 29 261 -1 361 283 58 0 chr9 108311323 108311461 -33959983 + L1ME LINE L1 5559 5704 -417 1626 178 20 34 chr9 108311631 108311929 -33959515 + AluJo SINE Alu 1 294 -18 42764 33 22 1 chr9 108311934 108317959 -33953485 + L1PA2 LINE L1 2 6154 -1 22 0 0 0 chr9 108317959 108317981 -33953463 + AT_rich Low_complexity Low_complexity 1 22 0 234 213 138 25 chr9 108318037 108318117 -33953327 - MLT1H LTR MaLR -16 533 445 21 0 0 0 chr9 108318741 108318762 -33952682 + AT_rich Low_complexity Low_complexity 1 21 0 310 270 30 10 chr9 108319303 108319403 -33952041 + L1ME LINE L1 5645 5746 -375 521 184 117 0 chr9 108319449 108319552 -33951892 - MER5A DNA MER1_type -73 116 2 275 256 22 0 chr9 108319673 108319763 -33951681 - L1ME LINE L1 -383 5738 5647 340 321 44 48 chr9 108320230 108320479 -33950965 - HAL1b LINE L1 -852 496 249 1676 194 0 14 chr9 108320486 108320774 -33950670 - AluJo SINE Alu -17 295 12 1982 139 0 14 chr9 108320877 108321172 -33950272 - AluSx SINE Alu -19 293 3 189 0 0 0 chr9 108321875 108321896 -33949548 + (TA)n Simple_repeat Simple_repeat 1 21 0 1273 138 73 0 chr9 108322103 108322321 -33949123 - MER46A DNA MER2_type -1 235 2 328 350 142 32 chr9 108322841 108323375 -33948069 + L2 LINE L2 2514 3104 -168 216 339 32 73 chr9 108323384 108323508 -33947936 - L2 LINE L2 -12 3260 3142 42718 52 4 1 chr9 108324827 108330951 -33940493 - L1PA5 LINE L1 -2 6152 11 207 0 0 0 chr9 108331104 108331127 -33940317 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2285 186 104 69 chr9 108331315 108332014 -33939430 + LTR8A LTR ERV1 1 724 -3 845 179 12 31 chr9 108332838 108333000 -33938444 - FRAM SINE Alu -7 159 1 2331 104 3 0 chr9 108333012 108333320 -33938124 - AluSc SINE Alu 0 309 1 444 190 78 27 chr9 108333466 108333638 -33937806 + HAL1b LINE L1 1191 6118 -3 463 245 252 7 chr9 108333730 108333873 -33937571 + MER5A DNA MER1_type 12 189 0 348 256 167 0 chr9 108333902 108333992 -33937452 + L2 LINE L2 3168 3272 0 2431 63 0 7 chr9 108334428 108334727 -33936717 - AluSq SINE Alu -16 297 1 192 355 141 16 chr9 108334835 108334956 -33936488 - MIR3 SINE MIR -41 167 32 216 319 33 33 chr9 108335449 108335540 -33935904 - MIR3 SINE MIR -31 177 87 527 132 44 0 chr9 108335561 108335652 -33935792 + AluS SINE Alu 1 95 -218 388 141 0 2 chr9 108336623 108336694 -33934750 - AluJb SINE Alu -197 105 47 636 202 163 46 chr9 108337095 108337454 -33933990 + L1MC5 LINE L1 6860 7252 -728 430 259 114 65 chr9 108337455 108337883 -33933561 + L1MC4 LINE L1 7324 7772 -270 1338 306 109 29 chr9 108338825 108339384 -33932060 - MER115 DNA AcHobo -2 691 88 4483 126 40 30 chr9 108339406 108340174 -33931270 + LTR25 LTR ERV1 9 784 -10 258 152 22 0 chr9 108340192 108340238 -33931206 + LTR25 LTR ERV1 738 784 -10 477 210 50 0 chr9 108341458 108341558 -33929886 - MER3 DNA MER1_type -99 110 6 440 284 12 53 chr9 108342628 108342797 -33928647 - MIR SINE MIR -43 219 58 32 0 0 0 chr9 108344119 108344151 -33927293 + AT_rich Low_complexity Low_complexity 1 32 0 12692 35 9 0 chr9 108348372 108350691 -33920753 + L1PA5 LINE L1 3822 6152 -2 22 0 0 0 chr9 108350692 108350714 -33920730 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 108350975 108351003 -33920441 + AT_rich Low_complexity Low_complexity 1 28 0 2379 205 119 26 chr9 108351153 108351379 -33920065 + L1ME1 LINE L1 5040 5244 -922 1853 160 10 16 chr9 108351379 108351685 -33919759 + AluJb SINE Alu 9 312 0 2379 205 119 26 chr9 108351685 108352352 -33919092 + L1ME1 LINE L1 5244 6018 -148 230 154 0 0 chr9 108352352 108352391 -33919053 + MER3 DNA MER1_type 11 49 -160 285 232 0 43 chr9 108352391 108352460 -33918984 + L1ME1 LINE L1 6058 6128 -50 180 111 0 0 chr9 108352822 108352849 -33918595 + (A)n Simple_repeat Simple_repeat 1 27 0 2581 237 125 27 chr9 108353408 108354593 -33916851 + L1ME3A LINE L1 4835 6161 -9 735 178 7 30 chr9 108355337 108355472 -33915972 - FLAM_C SINE Alu -11 132 1 281 298 48 0 chr9 108356265 108356349 -33915095 - L2 LINE L2 -16 3256 3169 607 309 196 56 chr9 108356908 108357190 -33914254 + L3 LINE CR1 577 818 -759 2092 113 0 3 chr9 108357190 108357509 -33913935 + AluSx SINE Alu 1 318 0 607 309 196 56 chr9 108357509 108358062 -33913382 + L3 LINE CR1 818 1530 -47 780 106 0 0 chr9 108358325 108358438 -33913006 - L1MA2 LINE L1 0 6304 6192 2218 88 3 10 chr9 108360102 108360396 -33911048 + AluSp SINE Alu 1 292 -21 2188 122 0 0 chr9 108360406 108360710 -33910734 + AluSg SINE Alu 1 304 -6 469 254 39 55 chr9 108362836 108363017 -33908427 + MER5B DNA MER1_type 1 178 0 9194 82 23 1 chr9 108364343 108366404 -33905040 - L1PA7 LINE L1 0 6469 4383 22 70 0 0 chr9 108366409 108366452 -33904992 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr9 108367183 108367219 -33904225 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr9 108367443 108367466 -33903978 + AT_rich Low_complexity Low_complexity 1 23 0 22845 113 15 24 chr9 108374380 108378735 -33892709 - L1PA7 LINE L1 -2057 4404 11 1636 254 55 56 chr9 108378899 108379541 -33891903 + MER76 LTR ERV 27 667 -21 29 0 0 0 chr9 108381329 108381358 -33890086 + AT_rich Low_complexity Low_complexity 1 29 0 210 268 67 63 chr9 108384789 108384925 -33886519 + MIR SINE MIR 25 161 -63 2408 73 0 0 chr9 108385650 108385952 -33885492 + AluY SINE Alu 1 302 -9 1942 83 101 0 chr9 108385963 108386240 -33885204 + AluSp SINE Alu 1 305 -8 413 233 92 108 chr9 108386489 108386738 -33884706 + MIR SINE MIR 3 247 -15 1361 153 0 19 chr9 108387138 108387353 -33884091 + AluSg/x SINE Alu 85 295 -17 337 241 74 0 chr9 108388388 108388496 -33882948 + L1M4 LINE L1 3803 3918 -2228 257 278 49 42 chr9 108388483 108388568 -33882876 + L1M4 LINE L1 4159 4247 -1899 * 2355 97 0 0 chr9 108388568 108388878 -33882566 + AluSg SINE Alu 1 310 0 257 278 49 42 chr9 108388878 108388936 -33882508 + L1M4 LINE L1 4247 4303 -1843 1490 206 16 6 chr9 108388936 108389257 -33882187 + L1MC2 LINE L1 6002 6325 -19 1274 176 130 7 chr9 108389269 108389553 -33881891 - MER2 DNA MER2_type -25 320 2 1796 146 23 33 chr9 108390940 108391242 -33880202 + AluJb SINE Alu 2 300 -12 387 272 154 25 chr9 108391848 108392010 -33879434 - MIR SINE MIR -49 213 31 1749 161 3 36 chr9 108392393 108392698 -33878746 + AluJo SINE Alu 1 295 -17 369 300 45 77 chr9 108393021 108393268 -33878176 - L3 LINE CR1 -4 1573 1335 24 0 0 0 chr9 108393325 108393349 -33878095 + AT_rich Low_complexity Low_complexity 1 24 0 4809 155 100 36 chr9 108393382 108394925 -33876519 + L1MC1 LINE L1 313 2107 -4319 725 244 77 31 chr9 108394922 108395209 -33876235 + L1MC1 LINE L1 2861 3160 -3266 * 888 106 49 0 chr9 108395213 108395336 -33876108 + AluSq/x SINE Alu 5 133 -179 701 170 14 0 chr9 108395338 108395485 -33875959 + L1MC1 LINE L1 3152 3300 -3126 2163 152 12 3 chr9 108395498 108395841 -33875603 + MER7A DNA MER2_type 2 345 -1 5007 234 68 15 chr9 108395841 108395894 -33875550 + L1MC1 LINE L1 3303 3352 -3074 324 48 0 0 chr9 108395894 108395936 -33875508 + (TAA)n Simple_repeat Simple_repeat 1 42 0 5007 234 68 15 chr9 108395936 108395983 -33875461 + L1MC1 LINE L1 3352 3395 -3031 1698 204 3 3 chr9 108395983 108396292 -33875152 + AluJo SINE Alu 1 309 -3 5007 234 68 15 chr9 108396292 108397800 -33873644 + L1MC1 LINE L1 3395 4998 -1428 645 72 0 21 chr9 108397827 108397924 -33873520 + AluY SINE Alu 206 300 -11 254 158 53 0 chr9 108397924 108397981 -33873463 + L1MC1 LINE L1 5030 5089 -1337 * 439 240 70 20 chr9 108397979 108398136 -33873308 + L1MC1 LINE L1 5383 5554 -872 2212 84 17 0 chr9 108398136 108398432 -33873012 - AluY SINE Alu -10 301 1 439 240 70 20 chr9 108398432 108398474 -33872970 + L1MC1 LINE L1 5554 5592 -834 44032 38 2 2 chr9 108398479 108404620 -33866824 + L1PA3 LINE L1 7 6152 -3 4642 153 38 39 chr9 108405293 108405443 -33866001 + L1MC1 LINE L1 5576 5725 -888 4642 155 31 7 chr9 108405443 108406271 -33865173 + L1MC1 LINE L1 5766 6613 0 565 291 172 15 chr9 108406532 108407072 -33864372 + L1MC4a LINE L1 5296 5920 -1888 2334 64 0 0 chr9 108408198 108408478 -33862966 + AluY SINE Alu 15 294 -17 207 0 0 0 chr9 108408570 108408593 -33862851 + (A)n Simple_repeat Simple_repeat 1 23 0 960 197 89 68 chr9 108408630 108408986 -33862458 + MSTB2 LTR MaLR 17 455 -2 739 281 106 0 chr9 108409149 108409384 -33862060 - MIR SINE MIR -1 261 2 1811 166 0 7 chr9 108412055 108412350 -33859094 + AluJb SINE Alu 4 296 -16 25 0 0 0 chr9 108412403 108412428 -33859016 + AT_rich Low_complexity Low_complexity 1 25 0 2216 90 3 23 chr9 108412536 108412837 -33858607 + AluSx SINE Alu 1 295 -17 195 42 0 0 chr9 108412922 108412946 -33858498 + (A)n Simple_repeat Simple_repeat 1 24 0 342 0 0 0 chr9 108412947 108412985 -33858459 + (CA)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr9 108413502 108413532 -33857912 + AT_rich Low_complexity Low_complexity 1 30 0 1917 159 3 0 chr9 108413537 108413838 -33857606 + AluJo SINE Alu 3 304 -8 342 222 14 14 chr9 108415640 108415712 -33855732 + L2 LINE L2 3226 3297 -16 2300 89 0 3 chr9 108415870 108416162 -33855282 - AluY SINE Alu -18 293 3 195 344 21 73 chr9 108416164 108416260 -33855184 + MIR SINE MIR 25 115 -93 237 211 0 19 chr9 108417808 108417860 -33853584 + GA-rich Low_complexity Low_complexity 4 54 0 1899 158 58 0 chr9 108419761 108420090 -33851354 + MER7A DNA MER2_type 1 346 0 1844 174 3 7 chr9 108420800 108421104 -33850340 - AluJb SINE Alu -9 303 1 189 243 0 0 chr9 108421332 108421369 -33850075 + L2 LINE L2 3021 3057 -215 198 0 0 0 chr9 108422380 108422402 -33849042 + (TA)n Simple_repeat Simple_repeat 1 22 0 30 27 0 0 chr9 108422409 108422446 -33848998 + AT_rich Low_complexity Low_complexity 1 37 0 4245 204 34 16 chr9 108423533 108425321 -33846123 + L1MB2 LINE L1 4304 6132 -39 2286 80 35 0 chr9 108425332 108425619 -33845825 + AluSx SINE Alu 1 297 -15 270 278 178 11 chr9 108426278 108426368 -33845076 - MER5A DNA MER1_type 0 189 85 234 318 132 31 chr9 108426539 108426668 -33844776 - MIR3 SINE MIR -51 157 16 277 373 17 0 chr9 108426976 108427094 -33844350 + MIR SINE MIR 22 141 -67 2085 85 0 0 chr9 108427419 108427677 -33843767 - AluSx SINE Alu -15 297 40 4290 158 129 106 chr9 108427681 108428133 -33843311 - L1 LINE L1 -1441 4705 4265 750 169 0 0 chr9 108428133 108428251 -33843193 + AluSg/x SINE Alu 179 296 -16 4290 158 129 106 chr9 108428251 108428942 -33842502 - L1 LINE L1 -1881 4265 3415 1760 167 0 30 chr9 108429132 108429432 -33842012 - AluJo SINE Alu -15 297 7 873 209 61 0 chr9 108430496 108430692 -33840752 + MER3 DNA MER1_type 1 208 -1 2225 110 0 16 chr9 108430962 108431270 -33840174 - AluSq SINE Alu -9 304 2 2133 86 4 0 chr9 108431337 108431606 -33839838 + AluSx SINE Alu 34 303 -9 2183 114 0 25 chr9 108431607 108431922 -33839522 + AluSx SINE Alu 2 308 -4 947 172 252 8 chr9 108432156 108432394 -33839050 - AluSx SINE Alu -16 296 1 1095 162 138 21 chr9 108432602 108432892 -33838552 - MER33 DNA MER1_type 0 324 1 2188 110 3 7 chr9 108433516 108433815 -33837629 - AluSg SINE Alu -11 299 2 1152 155 73 115 chr9 108435311 108435783 -33835661 + MER52A LTR ERV1 437 607 -413 355 277 39 92 chr9 108435799 108436156 -33835288 + MER52A LTR ERV1 549 802 -218 * 1993 205 0 47 chr9 108436124 108436549 -33834895 + MER52A LTR ERV1 1351 1755 0 565 343 78 50 chr9 108436557 108436954 -33834490 + L2 LINE L2 2568 2975 -339 1047 237 4 13 chr9 108437698 108437930 -33833514 - MIR SINE MIR -30 232 3 624 302 62 4 chr9 108438285 108438510 -33832934 - MIR SINE MIR -5 257 20 843 153 20 20 chr9 108438722 108438872 -33832572 - LTR32 LTR ERVL -5 466 317 268 200 60 0 chr9 108438872 108438922 -33832522 - LTR32 LTR ERVL -103 368 316 541 180 0 30 chr9 108438923 108439023 -33832421 - LTR32 LTR ERVL -360 111 15 557 261 147 26 chr9 108439583 108440079 -33831365 + L1ME4a LINE L1 5556 6110 -11 237 108 0 0 chr9 108440596 108440633 -33830811 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 24 0 24 chr9 108440633 108440653 -33830791 + AT_rich Low_complexity Low_complexity 1 20 -20 1680 153 46 18 chr9 108440653 108440935 -33830509 + AluSx SINE Alu 1 290 -22 23 24 0 24 chr9 108440935 108440955 -33830489 + AT_rich Low_complexity Low_complexity 20 40 0 198 0 0 0 chr9 108441060 108441082 -33830362 + (A)n Simple_repeat Simple_repeat 1 22 0 1415 198 66 7 chr9 108441090 108441378 -33830066 + AluJb SINE Alu 1 305 -7 564 135 0 0 chr9 108441386 108441497 -33829947 + (GGAA)n Simple_repeat Simple_repeat 4 114 0 423 312 43 14 chr9 108441623 108441764 -33829680 + MIR SINE MIR 8 152 -110 2477 50 0 10 chr9 108442868 108443167 -33828277 + AluY SINE Alu 1 296 -15 529 266 141 26 chr9 108443247 108443290 -33828154 - MIR SINE MIR -30 232 195 2258 92 3 13 chr9 108443290 108443595 -33827849 + AluSq SINE Alu 1 302 -11 529 266 141 26 chr9 108443595 108443743 -33827701 - MIR SINE MIR -67 195 19 285 264 204 19 chr9 108444495 108444652 -33826792 - MIR3 SINE MIR -71 137 2 327 222 151 24 chr9 108446620 108446746 -33824698 + MIR SINE MIR 60 201 -61 1867 145 3 3 chr9 108446777 108447074 -33824370 - AluSx SINE Alu -4 308 12 631 304 105 42 chr9 108447292 108447457 -33823987 - L2 LINE L2 -15 3298 3145 1674 153 4 21 chr9 108447457 108447738 -33823706 + AluJb SINE Alu 1 276 -36 631 304 105 42 chr9 108447738 108447954 -33823490 - L2 LINE L2 -168 3145 2893 207 211 123 0 chr9 108448048 108448105 -33823339 + L2 LINE L2 3241 3304 -9 849 236 11 6 chr9 108449125 108449307 -33822137 + MER5A DNA MER1_type 7 189 0 621 296 11 17 chr9 108449702 108449881 -33821563 + MIR SINE MIR 34 211 -51 558 215 96 25 chr9 108450131 108450318 -33821126 + MIR SINE MIR 58 258 -4 804 147 0 23 chr9 108450348 108450477 -33820967 - FLAM_C SINE Alu -17 126 1 2493 119 28 22 chr9 108450601 108450963 -33820481 + THE1B LTR MaLR 1 364 0 1108 301 39 32 chr9 108451062 108451422 -33820022 + L3 LINE CR1 1164 1529 -48 1966 140 0 29 chr9 108451422 108451729 -33819715 - AluJb SINE Alu -13 299 2 1108 301 39 32 chr9 108451729 108451776 -33819668 + L3 LINE CR1 1529 1574 -3 963 274 42 0 chr9 108452338 108452575 -33818869 + MIR SINE MIR 15 261 -1 2300 109 0 10 chr9 108453091 108453404 -33818040 - AluSg SINE Alu 0 310 1 2178 134 0 3 chr9 108453571 108453884 -33817560 - AluSx SINE Alu 0 312 1 2031 183 28 14 chr9 108453891 108454251 -33817193 + MLT1A1 LTR MaLR 1 365 0 465 19 0 0 chr9 108454662 108454716 -33816728 + (CCA)n Simple_repeat Simple_repeat 1 54 0 962 186 37 5 chr9 108454834 108455022 -33816422 - MER58A DNA MER1_type 0 224 31 688 274 108 9 chr9 108455227 108455439 -33816005 + MIR SINE MIR 28 260 -2 207 0 0 0 chr9 108455973 108455996 -33815448 + (CA)n Simple_repeat Simple_repeat 2 24 0 596 261 43 0 chr9 108456028 108456189 -33815255 + MIR SINE MIR 70 237 -25 382 278 28 0 chr9 108456503 108456611 -33814833 + L1MC4 LINE L1 7803 7913 -129 209 303 17 6 chr9 108456611 108456786 -33814658 + (TA)n Simple_repeat Simple_repeat 1 177 0 186 179 0 0 chr9 108456798 108456854 -33814590 + (TA)n Simple_repeat Simple_repeat 2 57 0 277 184 85 121 chr9 108456865 108457006 -33814438 + L1MC4 LINE L1 7907 8042 0 903 172 0 0 chr9 108457526 108457671 -33813773 - FRAM SINE Alu -10 166 22 2074 142 0 0 chr9 108457908 108458211 -33813233 - AluSx SINE Alu -9 303 1 1137 142 11 6 chr9 108458211 108458394 -33813050 - L1MC3 LINE L1 -7 7778 7595 830 221 70 87 chr9 108458424 108458840 -33812604 + LTR7 LTR ERV1 25 433 -17 408 187 64 3 chr9 108458858 108458954 -33812490 - L1MC3 LINE L1 -179 7816 7727 1722 183 0 7 chr9 108458954 108459262 -33812182 - AluJb SINE Alu 0 308 3 408 187 64 3 chr9 108459262 108459276 -33812168 - L1MC3 LINE L1 -268 7727 7504 26 0 0 0 chr9 108459276 108459302 -33812142 + AT_rich Low_complexity Low_complexity 1 26 0 1746 228 125 70 chr9 108459586 108459767 -33811677 - HAL1 LINE L1 -1273 1234 1064 2034 132 0 10 chr9 108459767 108460062 -33811382 - AluSx SINE Alu -11 301 10 1746 228 125 70 chr9 108460062 108460695 -33810749 - HAL1 LINE L1 -1443 1064 375 659 224 59 71 chr9 108460692 108460807 -33810637 - L1M4 LINE L1 -744 5402 5287 * 2176 92 0 7 chr9 108460807 108461113 -33810331 - AluSx SINE Alu 0 305 2 659 224 59 71 chr9 108461113 108461250 -33810194 - L1M4 LINE L1 -859 5287 5152 1911 145 3 0 chr9 108461905 108462188 -33809256 + AluSx SINE Alu 1 284 -28 1235 190 25 104 chr9 108462682 108463077 -33808367 + L1ME4a LINE L1 4789 5152 -994 4021 179 26 5 chr9 108463086 108463853 -33807591 + L1MB7 LINE L1 5383 6165 -19 1369 174 53 39 chr9 108463934 108464216 -33807228 + AluJo SINE Alu 1 286 -26 1845 184 0 0 chr9 108464524 108464833 -33806611 + AluJb SINE Alu 1 309 -3 2102 94 0 27 chr9 108465123 108465420 -33806024 + AluSc SINE Alu 1 289 -20 510 244 63 16 chr9 108465557 108465684 -33805760 - MIR SINE MIR -122 140 8 34 72 0 0 chr9 108465835 108465904 -33805540 + AT_rich Low_complexity Low_complexity 1 69 0 659 279 76 30 chr9 108466009 108466475 -33804969 + L1ME4a LINE L1 5176 5682 -439 22 56 0 0 chr9 108466480 108466516 -33804928 + AT_rich Low_complexity Low_complexity 1 36 0 827 136 8 8 chr9 108466553 108466678 -33804766 + FLAM_C SINE Alu 1 125 -18 325 298 78 16 chr9 108466696 108466887 -33804557 + L1ME4a LINE L1 5681 5883 -238 1869 165 16 7 chr9 108466894 108467203 -33804241 + AluSx SINE Alu 1 312 0 183 246 0 0 chr9 108467368 108467425 -33804019 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 341 284 158 26 chr9 108467430 108467620 -33803824 + MIR SINE MIR 48 262 0 443 254 52 22 chr9 108468007 108468141 -33803303 + L2 LINE L2 2589 2726 -588 2414 85 7 0 chr9 108468281 108468586 -33802858 - AluSx SINE Alu -5 307 1 220 279 76 25 chr9 108468590 108468669 -33802775 + L2 LINE L2 2940 3022 -250 410 277 72 6 chr9 108468894 108469060 -33802384 + L1ME4a LINE L1 5785 5961 -160 2214 131 0 6 chr9 108469148 108469462 -33801982 - AluSx SINE Alu 0 312 1 340 297 0 0 chr9 108469665 108469776 -33801668 - MER115 DNA AcHobo -254 439 329 387 237 111 37 chr9 108469843 108469978 -33801466 - MER115 DNA AcHobo -489 204 60 22 0 0 0 chr9 108470095 108470117 -33801327 + AT_rich Low_complexity Low_complexity 1 22 0 263 298 58 10 chr9 108470372 108470476 -33800968 - L2 LINE L2 -830 2484 2376 230 259 65 93 chr9 108470584 108470639 -33800805 - L1ME LINE L1 -461 5660 5607 1935 98 0 81 chr9 108470639 108470968 -33800476 - AluSx SINE Alu 0 304 1 230 259 65 93 chr9 108470968 108471019 -33800425 - L1ME LINE L1 -514 5607 5556 2405 92 3 0 chr9 108471541 108471845 -33799599 + AluSc SINE Alu 1 305 -4 2469 62 0 10 chr9 108472240 108472544 -33798900 + AluY SINE Alu 1 301 -10 277 299 68 27 chr9 108472684 108472831 -33798613 + MIR SINE MIR 72 224 -38 2462 87 3 0 chr9 108473237 108473547 -33797897 - AluSp SINE Alu -2 311 1 2303 107 3 0 chr9 108474186 108474494 -33796950 - AluSq SINE Alu -4 309 1 2474 77 10 3 chr9 108475783 108476093 -33795351 - AluSq SINE Alu -1 312 1 1611 192 0 46 chr9 108476104 108476406 -33795038 - AluJo SINE Alu -24 288 1 330 293 211 10 chr9 108476467 108476675 -33794769 - MIR SINE MIR -7 255 6 2159 123 17 0 chr9 108477930 108478230 -33793214 + AluSx SINE Alu 1 305 -7 364 275 7 72 chr9 108478682 108478820 -33792624 - MER5A DNA MER1_type -3 186 58 1021 171 17 23 chr9 108479300 108479475 -33791969 - FAM SINE Alu 0 175 2 2314 86 23 0 chr9 108479772 108480076 -33791368 + AluY SINE Alu 1 311 0 353 328 32 32 chr9 108480167 108480356 -33791088 - L3 LINE CR1 -24 1553 1365 815 271 57 69 chr9 108480432 108480941 -33790503 - MLT1J LTR MaLR -8 503 1 2267 82 3 7 chr9 108481224 108481518 -33789926 + AluSx SINE Alu 1 293 -19 3942 168 26 97 chr9 108481586 108482635 -33788809 + L1MC4a LINE L1 6674 7647 -161 336 48 0 0 chr9 108482638 108482680 -33788764 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 215 0 0 chr9 108482680 108482745 -33788699 + GA-rich Low_complexity Low_complexity 1 65 0 202 96 0 96 chr9 108482747 108482799 -33788645 + (GGAGAA)n Simple_repeat Simple_repeat 6 52 0 495 168 75 19 chr9 108482809 108482916 -33788528 + L1MC4 LINE L1 7919 8031 -11 * 4718 160 63 10 chr9 108482913 108484053 -33787391 - L1MB5 LINE L1 0 6672 5476 * 5068 198 77 56 chr9 108484025 108484457 -33786987 - L1MB5 LINE L1 -3257 3387 2966 1752 172 0 0 chr9 108484457 108484724 -33786720 - AluJo SINE Alu -45 267 1 5068 198 77 56 chr9 108484724 108485416 -33786028 - L1MB5 LINE L1 -3678 2966 2290 2223 95 3 3 chr9 108485416 108485724 -33785720 + AluSx SINE Alu 1 308 0 5068 198 77 56 chr9 108485724 108485944 -33785500 - L1MB5 LINE L1 -4354 2290 2076 2137 101 44 0 chr9 108485944 108486242 -33785202 - AluSx SINE Alu -1 311 1 2154 118 0 36 chr9 108486245 108486550 -33784894 - AluSx SINE Alu -18 294 1 5068 198 77 56 chr9 108486550 108487374 -33784070 - L1MB5 LINE L1 -4569 2075 1270 1851 157 0 14 chr9 108487374 108487668 -33783776 - AluJo SINE Alu -22 290 1 5068 198 77 56 chr9 108487668 108488768 -33782676 - L1MB5 LINE L1 -5374 1270 15 2208 108 0 3 chr9 108488792 108489089 -33782355 - AluSx SINE Alu -16 296 1 297 260 125 42 chr9 108489114 108489210 -33782234 + L2 LINE L2 3210 3313 0 344 264 86 46 chr9 108489232 108489406 -33782038 - MIR SINE MIR -81 181 1 940 82 8 0 chr9 108489868 108489990 -33781454 - AluSg/x SINE Alu -5 307 185 379 371 101 22 chr9 108489991 108490575 -33780869 + L2 LINE L2 2554 3212 -60 1561 164 0 30 chr9 108491007 108491275 -33780169 + AluJo SINE Alu 1 260 -52 407 284 256 16 chr9 108492101 108492355 -33779089 + L2 LINE L2 2953 3267 -5 307 247 0 32 chr9 108492865 108492958 -33778486 - L1ME4a LINE L1 -47 6074 5985 2437 86 0 0 chr9 108493615 108493918 -33777526 - AluSc SINE Alu -6 303 1 2113 119 3 0 chr9 108493918 108494213 -33777231 - AluSp SINE Alu -17 296 1 1559 72 54 22 chr9 108495072 108495295 -33776149 - MER30 DNA MER1_type 0 230 1 2413 64 0 13 chr9 108496150 108496464 -33774980 - AluY SINE Alu -1 310 1 23 33 0 0 chr9 108496788 108496818 -33774626 + AT_rich Low_complexity Low_complexity 1 30 0 2341 103 3 0 chr9 108498608 108498918 -33772526 + AluSx SINE Alu 1 311 -1 396 40 0 0 chr9 108499664 108499714 -33771730 + (CA)n Simple_repeat Simple_repeat 2 51 0 243 0 0 0 chr9 108501696 108501723 -33769721 + (A)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr9 108503675 108503696 -33767748 + (T)n Simple_repeat Simple_repeat 1 21 0 293 164 30 0 chr9 108504946 108505013 -33766431 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 2135 112 3 53 chr9 108507065 108507386 -33764058 - AluSx SINE Alu -7 305 1 1167 119 139 0 chr9 108507440 108507642 -33763802 + MER30 DNA MER1_type 1 230 0 2109 125 17 0 chr9 108509646 108509942 -33761502 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr9 108511186 108511207 -33760237 + AT_rich Low_complexity Low_complexity 1 21 0 230 289 115 0 chr9 108511498 108511602 -33759842 - L1ME4a LINE L1 -311 5810 5695 259 227 30 0 chr9 108562364 108562430 -33709014 + MIR SINE MIR 81 148 -60 193 248 231 8 chr9 108562438 108562559 -33708885 - MER5B DNA MER1_type -14 164 17 279 263 68 8 chr9 108562634 108562767 -33708677 + L3 LINE CR1 1197 1337 -240 884 224 0 0 chr9 108562904 108563069 -33708375 - FRAM SINE Alu -11 165 1 712 125 0 33 chr9 108563070 108563190 -33708254 - L1MB8 LINE L1 -4 6174 6059 261 271 34 42 chr9 108563466 108563584 -33707860 - MIR SINE MIR -60 202 86 266 287 58 11 chr9 108564528 108564615 -33706829 + L2 LINE L2 3223 3313 0 1264 217 48 63 chr9 108565366 108565762 -33705682 + MLT1B LTR MaLR 1 390 0 1267 246 80 30 chr9 108565811 108566251 -33705193 - MLT1C LTR MaLR 0 467 6 383 308 95 12 chr9 108566324 108566493 -33704951 - MIR SINE MIR -60 202 20 774 309 4 0 chr9 108566571 108566801 -33704643 - MIR SINE MIR -16 246 16 653 213 104 50 chr9 108566963 108567184 -33704260 + MIR SINE MIR 20 252 -10 272 225 192 32 chr9 108567992 108568128 -33703316 - MIR SINE MIR -63 145 36 602 220 7 64 chr9 108568638 108568779 -33702665 + MER45A DNA AcHobo 2 134 -44 25824 151 18 22 chr9 108569013 108569362 -33702082 - L1PA10 LINE L1 -1 6482 6133 2180 108 3 17 chr9 108569362 108569658 -33701786 + AluSx SINE Alu 3 294 -18 25824 151 18 22 chr9 108569658 108572286 -33699158 - L1PA10 LINE L1 -350 6133 3497 375 23 0 0 chr9 108572286 108572330 -33699114 + (TG)n Simple_repeat Simple_repeat 2 45 0 25824 151 18 22 chr9 108572330 108575358 -33696086 - L1PA10 LINE L1 -2986 3497 361 181 258 178 18 chr9 108575514 108575677 -33695767 - L2 LINE L2 -640 2674 2486 276 226 157 10 chr9 108575678 108575780 -33695664 + MIR SINE MIR 140 256 -6 2356 55 10 45 chr9 108577798 108578110 -33693334 - AluY SINE Alu -9 302 2 2457 66 0 7 chr9 108578145 108578479 -33692965 - AluY SINE Alu 0 311 1 615 266 92 32 chr9 108578508 108578790 -33692654 - L2 LINE L2 -18 3295 2997 21 36 0 0 chr9 108579080 108579108 -33692336 + AT_rich Low_complexity Low_complexity 1 28 0 1017 159 0 6 chr9 108579111 108579268 -33692176 - FRAM SINE Alu -24 152 1 979 320 65 13 chr9 108579268 108579868 -33691576 + L2 LINE L2 2274 2904 -410 26 0 0 0 chr9 108579923 108579949 -33691495 + AT_rich Low_complexity Low_complexity 1 26 0 1236 68 11 68 chr9 108579949 108580006 -33691438 - L1PB1 LINE L1 -3 6148 6089 2266 108 3 0 chr9 108580006 108580301 -33691143 + AluSp SINE Alu 1 296 -17 1236 68 11 68 chr9 108580301 108580433 -33691011 - L1PB1 LINE L1 -62 6089 5970 261 256 34 115 chr9 108580439 108580673 -33690771 + L2 LINE L2 3016 3230 -83 395 254 52 41 chr9 108580688 108581020 -33690424 - L1ME LINE L1 -383 5738 5351 2522 146 34 12 chr9 108581400 108581817 -33689627 - MSTB LTR MaLR 0 426 1 192 322 0 0 chr9 108581912 108581971 -33689473 - L2 LINE L2 0 3272 3214 306 148 0 0 chr9 108581987 108582041 -33689403 + (TA)n Simple_repeat Simple_repeat 1 54 0 481 284 59 14 chr9 108582098 108582320 -33689124 - L1MC4a LINE L1 -1951 5857 5626 2065 135 138 8 chr9 108584000 108584363 -33687081 + MSTA LTR MaLR 1 410 -18 3532 172 63 28 chr9 108584713 108585631 -33685813 + L1MB7 LINE L1 4904 5858 -326 1912 136 69 28 chr9 108585631 108585991 -33685453 - THE1C LTR MaLR 0 375 1 3532 172 63 28 chr9 108585991 108586174 -33685270 + L1MB7 LINE L1 5858 6033 -151 1696 114 8 4 chr9 108586174 108586429 -33685015 + L1PA13 LINE L1 5900 6155 -8 708 157 44 25 chr9 108586425 108586584 -33684860 + L1MB8 LINE L1 6017 6178 0 * 348 279 68 34 chr9 108586613 108586760 -33684684 - L1MEd LINE L1 -4997 1122 971 422 286 0 0 chr9 108587871 108587962 -33683482 + MIR SINE MIR 8 98 -164 318 333 40 23 chr9 108588178 108588352 -33683092 + MIR SINE MIR 81 257 -5 203 133 0 0 chr9 108589829 108589859 -33681585 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 190 235 59 59 chr9 108589861 108589929 -33681515 - L2 LINE L2 0 3272 3205 280 169 17 17 chr9 108592265 108592324 -33679120 + GA-rich Low_complexity Low_complexity 4 62 0 418 247 23 6 chr9 108592337 108592511 -33678933 + GA-rich Low_complexity Low_complexity 2 178 0 494 256 7 9 chr9 108592526 108592931 -33678513 + GA-rich Low_complexity Low_complexity 1 404 0 2142 247 65 15 chr9 108592945 108593806 -33677638 + L1PB4 LINE L1 908 1907 -4296 10189 177 27 7 chr9 108593877 108594114 -33677330 + L1PB4 LINE L1 2976 3207 -3006 216 0 0 0 chr9 108594114 108594138 -33677306 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 10189 177 27 7 chr9 108594138 108594635 -33676809 + L1PB4 LINE L1 3207 3693 -2520 324 0 0 0 chr9 108594635 108594671 -33676773 + (CAA)n Simple_repeat Simple_repeat 2 37 0 10189 177 27 7 chr9 108594671 108597110 -33674334 + L1PB4 LINE L1 3693 6212 -1 242 358 32 0 chr9 108597533 108597628 -33673816 + MIR SINE MIR 31 128 -134 306 303 123 16 chr9 108597790 108597912 -33673532 - MER5A DNA MER1_type 0 189 55 213 308 128 45 chr9 108597818 108597951 -33673493 + MER5A DNA MER1_type 40 183 -6 * 231 267 33 17 chr9 108599000 108599060 -33672384 + MIR SINE MIR 21 81 -181 235 213 38 50 chr9 108599574 108599654 -33671790 + MER5B DNA MER1_type 1 79 -99 * 243 164 146 0 chr9 108599635 108599690 -33671754 + L2 LINE L2 3246 3308 -5 411 223 60 143 chr9 108599812 108600063 -33671381 - MIR SINE MIR 0 262 33 3202 139 67 19 chr9 108600693 108601335 -33670109 - L1MA8 LINE L1 -61 6230 5558 2109 139 3 0 chr9 108601387 108601689 -33669755 - AluSx SINE Alu -9 303 1 204 305 98 0 chr9 108601906 108601988 -33669456 + MIR SINE MIR 117 206 -56 940 167 6 0 chr9 108602028 108602184 -33669260 - FRAM SINE Alu -19 157 1 2689 174 101 5 chr9 108602501 108603053 -33668391 + MER6A DNA MER2_type 1 605 0 217 236 42 42 chr9 108603201 108603273 -33668171 - MER5A DNA MER1_type -1 188 117 216 254 0 18 chr9 108603774 108603829 -33667615 - MIR SINE MIR -37 225 172 241 284 37 12 chr9 108603892 108603973 -33667471 - MIR SINE MIR -109 153 71 379 285 81 41 chr9 108604181 108604353 -33667091 + MIR SINE MIR 70 248 -14 338 310 0 0 chr9 108604504 108604591 -33666853 - MIR SINE MIR -49 213 127 262 322 91 8 chr9 108604609 108604730 -33666714 - L2 LINE L2 -155 3117 2987 680 269 18 46 chr9 108604881 108605100 -33666344 + L2 LINE L2 3100 3312 -1 314 250 241 0 chr9 108605225 108605337 -33666107 + L2 LINE L2 3134 3272 0 370 304 32 24 chr9 108605537 108605662 -33665782 + L2 LINE L2 3146 3271 -1 711 241 143 0 chr9 108606078 108606281 -33665163 + MIR SINE MIR 27 258 -4 584 323 36 88 chr9 108606298 108606719 -33664725 - L2 LINE L2 -2 3270 2872 257 318 217 8 chr9 108606786 108606915 -33664529 - MER5A DNA MER1_type -1 188 33 318 202 71 0 chr9 108607267 108607351 -33664093 + L1MC4 LINE L1 7420 7509 -533 812 296 115 24 chr9 108607471 108607880 -33663564 + MER77 LTR ERV1 154 599 -6 2084 150 0 6 chr9 108608031 108608344 -33663100 + AluSx SINE Alu 2 312 0 749 233 139 36 chr9 108608348 108608786 -33662658 + L1MC4 LINE L1 7560 8042 0 1175 192 40 16 chr9 108608808 108609826 -33661618 + L1MC4a LINE L1 6227 7563 0 185 333 67 0 chr9 108609849 108609924 -33661520 + MER5A DNA MER1_type 110 189 0 283 305 213 6 chr9 108610873 108611037 -33660407 - MIR SINE MIR -24 238 41 2291 55 0 0 chr9 108611100 108611373 -33660071 - AluY SINE Alu -1 310 38 1151 252 61 23 chr9 108611430 108611870 -33659574 + LTR16C LTR ERVL 1 457 -34 370 240 83 16 chr9 108611999 108612038 -33659406 - MLT1J LTR MaLR -264 247 212 216 0 0 0 chr9 108612038 108612062 -33659382 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 370 240 83 16 chr9 108612062 108612143 -33659301 - MLT1J LTR MaLR -299 212 119 211 334 86 49 chr9 108612250 108612576 -33658868 - L2 LINE L2 -446 2868 2531 453 274 122 39 chr9 108613014 108613244 -33658200 + MIR SINE MIR 3 251 -11 532 300 72 22 chr9 108613902 108614125 -33657319 - MIR SINE MIR -8 254 21 229 209 0 0 chr9 108614160 108614203 -33657241 + (CA)n Simple_repeat Simple_repeat 1 43 0 346 348 65 7 chr9 108614547 108614702 -33656742 - MIR SINE MIR -79 183 20 595 22 22 33 chr9 108614702 108614792 -33656652 - L1PA6 LINE L1 0 6154 6066 24 32 0 0 chr9 108614918 108614949 -33656495 + AT_rich Low_complexity Low_complexity 1 31 0 230 176 176 0 chr9 108614960 108615011 -33656433 - MLT1L LTR MaLR -116 499 440 291 322 41 20 chr9 108615136 108615282 -33656162 - MLT1L LTR MaLR -366 249 101 22 35 0 0 chr9 108615870 108615899 -33655545 + AT_rich Low_complexity Low_complexity 1 29 0 411 100 0 0 chr9 108616637 108616707 -33654737 + (TG)n Simple_repeat Simple_repeat 1 70 0 207 133 0 0 chr9 108616707 108616752 -33654692 + (GA)n Simple_repeat Simple_repeat 2 46 0 393 301 33 46 chr9 108617959 108618112 -33653332 - L3 LINE CR1 -12 1565 1415 574 246 0 8 chr9 108618133 108618263 -33653181 - MIR SINE MIR -17 245 117 252 351 114 10 chr9 108618375 108618577 -33652867 - L3 LINE CR1 -257 1320 1098 292 284 176 17 chr9 108619021 108619152 -33652292 + MIR SINE MIR 20 146 -62 3559 173 62 18 chr9 108619313 108620054 -33651390 + MER4E LTR ERV1 1 774 -5 454 319 98 15 chr9 108620064 108620268 -33651176 - MIR SINE MIR -3 259 39 302 297 88 27 chr9 108620895 108621043 -33650401 + MIR3 SINE MIR 16 172 -36 186 103 0 0 chr9 108621067 108621096 -33650348 + (CAAGG)n Simple_repeat Simple_repeat 1 29 0 240 292 34 22 chr9 108621096 108621185 -33650259 - L2 LINE L2 -1 3312 3223 278 292 52 0 chr9 108621335 108621431 -33650013 + MIR SINE MIR 162 262 0 237 315 68 45 chr9 108621549 108621771 -33649673 - L2 LINE L2 -232 3040 2814 2376 164 31 31 chr9 108622310 108622767 -33648677 - MSTB2 LTR MaLR 0 457 1 28 0 0 0 chr9 108623015 108623043 -33648401 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 108623263 108623286 -33648158 + AT_rich Low_complexity Low_complexity 1 23 0 2379 107 0 3 chr9 108623292 108623602 -33647842 - AluSq SINE Alu -4 309 1 1174 264 75 50 chr9 108623699 108624222 -33647222 - MLT1H LTR MaLR -2 547 12 709 296 61 14 chr9 108624243 108624587 -33646857 - L1ME4a LINE L1 -245 5876 5517 514 253 82 7 chr9 108625116 108625262 -33646182 + MIR SINE MIR 32 188 -74 1252 209 33 3 chr9 108625856 108626163 -33645281 - MER33 DNA MER1_type -8 316 1 274 234 52 0 chr9 108626876 108626953 -33644491 - MIR SINE MIR -96 166 86 945 276 138 30 chr9 108627155 108627692 -33643752 - MLT1G1 LTR MaLR 0 595 1 185 189 27 0 chr9 108629495 108629532 -33641912 - L2 LINE L2 -15 3298 3261 * 284 296 197 0 chr9 108629499 108629631 -33641813 - MIR SINE MIR -13 249 92 617 318 92 43 chr9 108629760 108630563 -33640881 + L2 LINE L2 2474 3308 -5 461 261 20 26 chr9 108630692 108630845 -33640599 + MIR3 SINE MIR 49 200 -8 386 229 0 76 chr9 108631415 108631533 -33639911 - MIR SINE MIR -89 173 65 26 0 0 0 chr9 108631729 108631755 -33639689 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr9 108631854 108631880 -33639564 + AT_rich Low_complexity Low_complexity 1 26 0 541 261 50 59 chr9 108633164 108633239 -33638205 + L2 LINE L2 3078 3152 -161 1914 264 45 11 chr9 108633239 108633776 -33637668 + MLT1H1 LTR MaLR 1 555 0 541 261 50 59 chr9 108633776 108633938 -33637506 + L2 LINE L2 3152 3313 0 581 122 0 9 chr9 108634219 108634326 -33637118 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 760 297 46 23 chr9 108635313 108635775 -33635669 - MLT1K LTR MaLR 0 588 75 248 273 197 0 chr9 108637073 108637205 -33634239 - MIR SINE MIR -14 248 91 1505 255 90 19 chr9 108637900 108638413 -33633031 - MLT1H LTR MaLR 0 549 1 4317 61 13 6 chr9 108639044 108640068 -33631376 + MER11A LTR ERVK 1 1266 0 2384 78 10 3 chr9 108640069 108640364 -33631080 - AluY SINE Alu -14 297 1 350 207 69 35 chr9 108640400 108640487 -33630957 - MIR SINE MIR -99 163 74 303 293 95 7 chr9 108640654 108640801 -33630643 - MIR SINE MIR -56 206 47 355 246 92 0 chr9 108641703 108641845 -33629599 - L1ME4a LINE L1 -2 6053 5899 231 252 203 21 chr9 108641914 108642057 -33629387 - L1ME4a LINE L1 -438 5617 5449 2007 126 108 0 chr9 108642107 108642504 -33628940 + L1MC3 LINE L1 7346 7785 0 689 299 94 0 chr9 108642705 108642929 -33628515 + MIR SINE MIR 8 252 -10 965 65 29 7 chr9 108643680 108643819 -33627625 + L1MA5A LINE L1 6153 6294 -3 1943 144 37 0 chr9 108643826 108644124 -33627320 + AluSx SINE Alu 1 309 -3 286 272 0 0 chr9 108644278 108644359 -33627085 - HAL1 LINE L1 -176 2331 2251 315 275 71 67 chr9 108644459 108644699 -33626745 - L1 LINE L1 -3630 2516 2276 24 32 0 0 chr9 108644923 108644954 -33626490 + AT_rich Low_complexity Low_complexity 1 31 0 397 327 24 18 chr9 108645200 108645365 -33626079 - HAL1b LINE L1 -579 769 604 2121 145 7 4 chr9 108645533 108645935 -33625509 - MLT2B2 LTR ERVL -64 451 1 189 0 0 0 chr9 108645978 108645999 -33625445 + (T)n Simple_repeat Simple_repeat 1 21 0 28 0 0 0 chr9 108646178 108646206 -33625238 + AT_rich Low_complexity Low_complexity 1 28 0 743 286 124 40 chr9 108646806 108647226 -33624218 - LTR67 LTR ERVL 0 557 103 2280 127 3 3 chr9 108647731 108648101 -33623343 + L1P LINE L1 4024 4393 -1753 3025 245 56 21 chr9 108648136 108649309 -33622135 - L1ME4a LINE L1 -795 5285 4096 * 15858 192 39 15 chr9 108649296 108651012 -33620432 - L1PA13 LINE L1 -338 7263 5590 2174 114 3 3 chr9 108651012 108651311 -33620133 - AluSc SINE Alu -10 299 1 15858 192 39 15 chr9 108651311 108654286 -33617158 - L1PA13 LINE L1 -2011 5590 2471 5107 230 57 18 chr9 108654353 108655901 -33615543 - L1PA13 LINE L1 -5874 1707 1 3795 273 83 27 chr9 108655911 108659492 -33611952 - L1ME LINE L1 -2259 3821 47 1181 234 138 12 chr9 108659703 108660024 -33611420 - MLT1F1 LTR MaLR -4 563 197 447 19 0 0 chr9 108660024 108660076 -33611368 + (TG)n Simple_repeat Simple_repeat 1 52 0 1181 234 138 12 chr9 108660076 108660088 -33611356 - MLT1F1 LTR MaLR -370 197 188 1162 210 0 28 chr9 108661755 108662003 -33609441 + MIR SINE MIR 13 253 -9 469 208 155 42 chr9 108662169 108662337 -33609107 - MIR SINE MIR -4 258 72 2183 151 50 8 chr9 108662354 108662752 -33608692 - MSTB1 LTR MaLR -17 415 1 2352 125 0 0 chr9 108662889 108663202 -33608242 - AluSq SINE Alu 0 313 1 463 242 0 83 chr9 108664855 108664898 -33606546 + MER58A DNA MER1_type 31 76 -265 1633 180 24 27 chr9 108664898 108665192 -33606252 + AluJb SINE Alu 1 293 -19 463 242 0 83 chr9 108665192 108665280 -33606164 + MER58A DNA MER1_type 76 151 -73 636 246 0 0 chr9 108665300 108665422 -33606022 - MIR SINE MIR -139 123 2 1498 207 45 22 chr9 108665596 108665953 -33605491 + MLT1A1 LTR MaLR 1 365 0 186 299 69 35 chr9 108665991 108666078 -33605366 + L2 LINE L2 3158 3247 -25 230 385 58 11 chr9 108666611 108666785 -33604659 + MIR SINE MIR 2 183 -79 200 302 16 0 chr9 108667108 108667171 -33604273 + L3 LINE CR1 1447 1510 -67 286 247 31 99 chr9 108667258 108667420 -33604024 + MIR SINE MIR 40 190 -72 205 186 17 34 chr9 108667667 108667726 -33603718 + (CAT)n Simple_repeat Simple_repeat 2 59 0 473 350 78 5 chr9 108667730 108667947 -33603497 - MIR SINE MIR -12 250 17 246 267 0 17 chr9 108668646 108668706 -33602738 - L2 LINE L2 0 3313 3255 * 314 327 40 0 chr9 108668701 108668802 -33602642 + MIR SINE MIR 49 153 -55 1077 174 25 25 chr9 108669034 108669270 -33602174 - MER106A DNA MER1_type 0 236 1 2044 140 0 7 chr9 108669445 108669799 -33601645 - AluSp SINE Alu 0 313 1 29 28 0 0 chr9 108669808 108669844 -33601600 + AT_rich Low_complexity Low_complexity 1 36 0 427 330 113 26 chr9 108669922 108670152 -33601292 + MIR SINE MIR 9 258 -4 310 284 8 31 chr9 108671759 108671886 -33599558 + CT-rich Low_complexity Low_complexity 1 124 0 405 261 52 26 chr9 108673020 108673135 -33598309 + L2 LINE L2 3136 3253 -19 21 36 0 0 chr9 108674979 108675007 -33596437 + AT_rich Low_complexity Low_complexity 1 28 0 528 304 87 29 chr9 108675141 108675348 -33596096 - MIR SINE MIR -12 250 32 984 242 42 5 chr9 108675844 108676059 -33595385 - MER58A DNA MER1_type -1 223 1 213 121 0 0 chr9 108676223 108676256 -33595188 + (ATG)n Simple_repeat Simple_repeat 2 34 0 184 369 89 48 chr9 108677540 108677911 -33593533 + L2 LINE L2 2824 3209 -63 243 0 0 0 chr9 108677924 108677951 -33593493 + (TG)n Simple_repeat Simple_repeat 2 28 0 447 68 0 0 chr9 108678628 108678687 -33592757 + (TG)n Simple_repeat Simple_repeat 2 60 0 359 191 43 32 chr9 108679207 108679301 -33592143 - L2 LINE L2 -2 3311 3217 399 41 0 0 chr9 108680115 108680164 -33591280 + (TG)n Simple_repeat Simple_repeat 2 50 0 1575 183 76 59 chr9 108682292 108682750 -33588694 - MER31B LTR ERV1 0 466 1 222 283 0 17 chr9 108683756 108683816 -33587628 + CT-rich Low_complexity Low_complexity 2 60 0 234 273 18 45 chr9 108684493 108684603 -33586841 + CT-rich Low_complexity Low_complexity 2 108 0 186 43 0 0 chr9 108684835 108684858 -33586586 + (TTA)n Simple_repeat Simple_repeat 3 25 0 272 224 17 0 chr9 108685298 108685356 -33586088 + MER81 DNA DNA 56 114 0 5067 101 11 1 chr9 108685511 108686236 -33585208 - L1PA11 LINE L1 0 6174 5443 264 130 0 0 chr9 108686614 108686660 -33584784 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 21 36 0 0 chr9 108686873 108686901 -33584543 + AT_rich Low_complexity Low_complexity 1 28 0 240 271 157 7 chr9 108687269 108687409 -33584035 - HAL1b LINE L1 -442 906 746 546 252 101 106 chr9 108687646 108688019 -33583425 - HAL1 LINE L1 -763 1744 1370 1528 199 7 7 chr9 108688019 108688295 -33583149 - AluJo SINE Alu -21 291 16 546 252 101 106 chr9 108688295 108688826 -33582618 - HAL1 LINE L1 -1137 1370 845 215 283 38 0 chr9 108691310 108691363 -33580081 - L2 LINE L2 -4 3268 3214 210 277 15 15 chr9 108691583 108691648 -33579796 - MIR3 SINE MIR 0 208 144 734 362 96 12 chr9 108691721 108692285 -33579159 - L3 LINE CR1 -709 868 258 250 324 93 61 chr9 108692449 108692898 -33578546 - L2 LINE L2 -213 3059 2590 523 257 20 26 chr9 108694951 108695103 -33576341 - MIR SINE MIR -89 173 23 219 294 0 0 chr9 108695107 108695158 -33576286 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 320 299 62 14 chr9 108695554 108695698 -33575746 - MIR SINE MIR -12 250 100 211 324 72 9 chr9 108695732 108695843 -33575601 - MIR SINE MIR -18 244 127 219 261 0 0 chr9 108695912 108695958 -33575486 - L2 LINE L2 -86 3186 3141 21 36 0 0 chr9 108697071 108697099 -33574345 + AT_rich Low_complexity Low_complexity 1 28 0 374 67 33 50 chr9 108697100 108697160 -33574284 + L1MC1 LINE L1 6275 6333 0 1597 134 134 0 chr9 108698546 108698799 -33572645 + AluSx SINE Alu 14 300 -12 1492 280 58 15 chr9 108698956 108699477 -33571967 + MLT1H LTR MaLR 1 543 -6 366 275 0 0 chr9 108700157 108700248 -33571196 + MER5C DNA MER1_type 30 120 -204 282 56 0 0 chr9 108700420 108700456 -33570988 + (CA)n Simple_repeat Simple_repeat 2 37 0 25 31 0 0 chr9 108700600 108700632 -33570812 + AT_rich Low_complexity Low_complexity 1 32 0 391 271 118 61 chr9 108700878 108701207 -33570237 - MLT1K LTR MaLR 0 588 241 613 299 111 0 chr9 108701530 108701737 -33569707 - MIR SINE MIR -13 249 20 321 200 25 12 chr9 108702496 108702576 -33568868 + MIR SINE MIR 177 257 -5 548 241 38 47 chr9 108702582 108702815 -33568629 - MIR SINE MIR -28 234 1 394 259 104 0 chr9 108702901 108703036 -33568408 + LTR33 LTR ERVL 33 181 -340 378 228 53 9 chr9 108703180 108703294 -33568150 + LTR33 LTR ERVL 403 521 0 338 316 85 85 chr9 108703692 108704046 -33567398 - L2 LINE L2 -9 3263 2910 249 328 40 32 chr9 108704211 108704336 -33567108 - L2 LINE L2 -575 2739 2614 316 254 48 3 chr9 108705105 108705215 -33566229 + MIR3 SINE MIR 57 172 -36 256 221 88 88 chr9 108705493 108705629 -33565815 - MIR SINE MIR -3 259 124 12700 190 22 48 chr9 108707325 108709739 -33561705 - L1PB1 LINE L1 -1 6866 4390 555 70 0 0 chr9 108709739 108709810 -33561634 + Alu SINE Alu 2 72 -238 12700 190 22 48 chr9 108709810 108709914 -33561530 - L1PB1 LINE L1 -2477 4390 4285 1734 35 0 5 chr9 108709914 108710115 -33561329 + AluY SINE Alu 112 311 0 12700 190 22 48 chr9 108710115 108713122 -33558322 - L1PB1 LINE L1 -2582 4285 1392 724 278 5 0 chr9 108713119 108713310 -33558134 - L1PB1 LINE L1 -6666 197 6 * 231 264 209 0 chr9 108714214 108714362 -33557082 - MIR SINE MIR -11 251 73 515 234 7 29 chr9 108714435 108714572 -33556872 + MIR SINE MIR 56 189 -73 2824 20 0 0 chr9 108715651 108715957 -33555487 + AluYa5 SINE Alu 1 306 -5 22 56 0 0 chr9 108717163 108717199 -33554245 + AT_rich Low_complexity Low_complexity 1 36 0 398 124 47 20 chr9 108717715 108717841 -33553603 + MER53 DNA DNA 1 186 -3 702 279 119 48 chr9 108718607 108718765 -33552679 - Charlie8 DNA MER1_type -1995 422 277 1514 185 24 76 chr9 108718765 108719148 -33552296 - MLT1A1 LTR MaLR 0 365 3 702 279 119 48 chr9 108719148 108719283 -33552161 - Charlie8 DNA MER1_type -2140 277 108 332 171 13 0 chr9 108719450 108719526 -33551918 + L1MA5 LINE L1 6219 6295 -5 384 125 0 0 chr9 108720545 108720609 -33550835 + (TG)n Simple_repeat Simple_repeat 2 65 0 252 270 98 79 chr9 108721328 108721506 -33549938 - MIR SINE MIR -50 212 16 492 167 0 0 chr9 108723329 108723425 -33548019 + GA-rich Low_complexity Low_complexity 2 97 0 269 167 282 0 chr9 108724794 108724872 -33546572 + MIR SINE MIR 108 207 -55 430 307 40 28 chr9 108724982 108725158 -33546286 + L2 LINE L2 2892 3069 -244 3183 108 31 16 chr9 108725171 108725624 -33545820 + L1PA10 LINE L1 5709 6168 0 194 269 90 13 chr9 108725813 108725891 -33545553 - L2 LINE L2 -36 3236 3153 206 345 17 34 chr9 108726044 108726163 -33545281 - L2 LINE L2 -202 3070 2954 384 312 14 7 chr9 108726222 108726363 -33545081 - L3 LINE CR1 -747 830 689 306 319 118 17 chr9 108726476 108726595 -33544849 + MIR3 SINE MIR 3 133 -75 344 272 0 0 chr9 108727136 108727217 -33544227 - MIR3 SINE MIR -19 189 109 1197 194 4 29 chr9 108727321 108727563 -33543881 + AluJb SINE Alu 64 299 -13 450 337 75 25 chr9 108727620 108728106 -33543338 - L2 LINE L2 -195 3077 2554 1258 254 85 15 chr9 108728470 108728871 -33542573 - LTR16A LTR ERVL -1 449 21 385 272 11 11 chr9 108729187 108729329 -33542115 + L1MC/D LINE L1 5711 5850 -303 224 269 207 35 chr9 108729768 108729913 -33541531 + L3 LINE CR1 1330 1499 -78 1800 122 122 15 chr9 108782289 108782626 -33488818 + THE1C LTR MaLR 3 375 0 186 200 0 0 chr9 108782794 108782829 -33488615 - L2 LINE L2 0 3272 3238 341 280 76 18 chr9 108783206 108783431 -33488013 - L1M4 LINE L1 -2180 3966 3729 304 293 77 93 chr9 108783584 108783895 -33487549 - L1M4 LINE L1 -2579 3567 3262 3928 211 64 37 chr9 108783918 108784038 -33487406 - L1MB8 LINE L1 0 6178 6063 1911 63 66 56 chr9 108784038 108784325 -33487119 - AluY SINE Alu -16 295 6 3928 211 64 37 chr9 108784325 108786290 -33485154 - L1MB8 LINE L1 -115 6063 4034 2116 84 42 3 chr9 108786290 108786576 -33484868 - AluY SINE Alu -10 301 5 3928 211 64 37 chr9 108786576 108786661 -33484783 - L1MB8 LINE L1 -2144 4034 3953 366 299 138 49 chr9 108786687 108786872 -33484572 - L1MB8 LINE L1 -3429 2717 2493 2889 50 22 35 chr9 108786872 108787272 -33484172 - L1PA7 LINE L1 0 6154 5760 366 299 138 49 chr9 108787272 108787390 -33484054 - L1MB8 LINE L1 -3653 2493 2387 213 123 46 0 chr9 108787854 108787919 -33483525 + (TA)n Simple_repeat Simple_repeat 1 68 0 287 233 17 44 chr9 108787947 108788127 -33483317 + (TAAA)n Simple_repeat Simple_repeat 4 178 0 * 330 253 31 0 chr9 108788000 108788162 -33483282 + (TA)n Simple_repeat Simple_repeat 2 168 0 229 313 116 23 chr9 108788223 108788482 -33482962 - HAL1b LINE L1 -544 804 522 236 357 76 24 chr9 108788594 108788843 -33482601 - HAL1b LINE L1 -971 377 116 1709 119 4 4 chr9 108789202 108789445 -33481999 - AluSx SINE Alu -69 243 1 303 49 0 0 chr9 108789452 108789493 -33481951 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2747 13 0 0 chr9 108789493 108789803 -33481641 - L1PA2 LINE L1 -18 6137 5828 5887 11 0 0 chr9 108789803 108790506 -33480938 + L1P LINE L1 3995 4697 -1449 227 206 0 16 chr9 108790814 108790877 -33480567 + (TCTG)n Simple_repeat Simple_repeat 4 65 0 318 280 53 40 chr9 108791521 108791671 -33479773 + MIR SINE MIR 45 197 -11 184 222 0 44 chr9 108791645 108791690 -33479754 + L2 LINE L2 3267 3309 -4 * 2314 88 0 0 chr9 108792011 108792306 -33479138 - AluY SINE Alu -14 297 3 302 258 0 0 chr9 108792431 108792520 -33478924 - L1MC4 LINE L1 -1340 6702 6614 243 0 0 0 chr9 108792550 108792577 -33478867 + (CA)n Simple_repeat Simple_repeat 2 28 0 187 320 0 0 chr9 108792936 108792986 -33478458 + MIR SINE MIR 83 132 -76 245 29 29 0 chr9 108793706 108793740 -33477704 + (TG)n Simple_repeat Simple_repeat 2 36 0 187 365 47 0 chr9 108793853 108793938 -33477506 + MIR SINE MIR 168 256 -6 21 0 0 0 chr9 108794187 108794208 -33477236 + AT_rich Low_complexity Low_complexity 1 21 0 896 139 35 0 chr9 108794355 108794527 -33476917 - L1MA7 LINE L1 -703 5609 5432 2117 185 143 19 chr9 108794530 108795102 -33476342 + L1MA7 LINE L1 5624 6266 -25 398 259 43 9 chr9 108795103 108795219 -33476225 + MIR SINE MIR 137 256 -6 222 267 40 13 chr9 108795998 108796073 -33475371 - MER5A DNA MER1_type -77 112 36 265 193 60 24 chr9 108796783 108796866 -33474578 + LTR67 LTR ERVL 456 541 -16 365 198 0 34 chr9 108797240 108797347 -33474097 - L1MC4 LINE L1 -1339 6983 1995 193 325 13 0 chr9 108797513 108797590 -33473854 - MIR SINE MIR -2 260 183 180 242 0 0 chr9 108797969 108798002 -33473442 + L2 LINE L2 3259 3291 -22 204 200 0 0 chr9 108799094 108799144 -33472300 + A-rich Low_complexity Low_complexity 1 50 0 1524 174 76 6 chr9 108799242 108799559 -33471885 + MLT1A1 LTR MaLR 23 361 -4 209 361 112 37 chr9 108799580 108799876 -33471568 + L3 LINE CR1 644 961 -616 264 305 181 44 chr9 108800051 108800300 -33471144 + L3 LINE CR1 1100 1382 -195 1070 266 108 36 chr9 108800308 108800751 -33470693 + MLT1J LTR MaLR 1 475 -36 208 291 69 90 chr9 108801008 108801197 -33470247 + L3 LINE CR1 1155 1339 -238 263 267 35 35 chr9 108802082 108802168 -33469276 - L2 LINE L2 0 3272 3187 199 277 394 0 chr9 108802170 108802264 -33469180 - L2 LINE L2 0 3272 3142 623 266 30 20 chr9 108802296 108802495 -33468949 - MIR SINE MIR 0 262 62 559 214 156 7 chr9 108802560 108802714 -33468730 - MER97b DNA MER1_type? -874 179 3 259 326 123 55 chr9 108802783 108803191 -33468253 - L2 LINE L2 -181 3091 2652 198 191 0 0 chr9 108803712 108803759 -33467685 + CT-rich Low_complexity Low_complexity 2 48 0 200 222 0 16 chr9 108803856 108803919 -33467525 + GA-rich Low_complexity Low_complexity 4 65 0 353 339 73 49 chr9 108804214 108804639 -33466805 - L2 LINE L2 -337 2977 2543 1799 184 42 28 chr9 108804701 108805060 -33466384 + MLT1A1 LTR MaLR 1 364 -1 306 368 54 42 chr9 108805149 108805315 -33466129 + MIR SINE MIR 8 175 -87 386 263 0 0 chr9 108805363 108805443 -33466001 + MIR SINE MIR 33 112 -150 217 376 29 0 chr9 108805801 108805883 -33465561 + MIR SINE MIR 37 120 -88 391 279 57 33 chr9 108806199 108806321 -33465123 + MIR SINE MIR 12 136 -126 213 273 0 0 chr9 108806415 108806470 -33464974 + CT-rich Low_complexity Low_complexity 2 56 0 198 0 0 0 chr9 108807211 108807233 -33464211 + (T)n Simple_repeat Simple_repeat 1 22 0 196 348 119 46 chr9 108807235 108807537 -33463907 + L2 LINE L2 2305 2628 -686 2702 191 2 41 chr9 108807537 108808070 -33463374 + MLT2B2 LTR ERVL 1 512 -3 194 214 24 0 chr9 108808443 108808485 -33462959 + MIR3 SINE MIR 163 205 -3 200 200 0 0 chr9 108808511 108808546 -33462898 + CT-rich Low_complexity Low_complexity 3 37 0 929 232 186 15 chr9 108809410 108809802 -33461642 + LTR50 LTR ERVL 1 459 -336 652 177 168 10 chr9 108809828 108810031 -33461413 + LTR50 LTR ERVL 530 764 -31 313 294 46 66 chr9 108810352 108810549 -33460895 - L1M4 LINE L1 -745 5401 5209 341 340 69 20 chr9 108810583 108810786 -33460658 - L1M4 LINE L1 -1013 5133 4921 752 248 41 46 chr9 108810792 108811194 -33460250 - MLT1A1 LTR MaLR -6 390 1 296 325 90 4 chr9 108811197 108811452 -33459992 - L1M4 LINE L1 -1231 4915 4639 4878 162 60 34 chr9 108811829 108812872 -33458572 + MER11C LTR ERVK 1 1071 0 877 275 140 42 chr9 108812875 108813013 -33458431 - L1M4 LINE L1 -1949 4197 4074 2281 87 42 0 chr9 108813013 108813302 -33458142 + AluY SINE Alu 1 301 -10 877 275 140 42 chr9 108813302 108813396 -33458048 - L1M4 LINE L1 -2072 4074 3991 218 81 27 0 chr9 108813396 108813433 -33458011 + (TA)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr9 108813433 108813454 -33457990 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 877 275 140 42 chr9 108813454 108813650 -33457794 - L1M4 LINE L1 -2155 3991 3816 636 283 31 23 chr9 108813650 108813908 -33457536 + MIR SINE MIR 3 262 0 877 275 140 42 chr9 108813908 108814716 -33456728 - L1M4 LINE L1 -2330 3816 2836 1760 171 3 0 chr9 108814744 108815094 -33456350 - L1PA12 LINE L1 -1500 4646 4296 6123 84 32 9 chr9 108815095 108816601 -33454843 + L1PA12 LINE L1 4675 6168 0 337 292 119 37 chr9 108818651 108819004 -33452440 - L1M4 LINE L1 -3315 2831 2450 229 263 0 12 chr9 108819080 108819160 -33452284 - HAL1 LINE L1 -954 1553 1475 3109 108 11 0 chr9 108819190 108819642 -33451802 - L1PA10 LINE L1 -1 6167 5711 521 316 102 41 chr9 108819737 108820196 -33451248 - HAL1 LINE L1 -1070 1437 951 28 0 0 0 chr9 108820208 108820236 -33451208 + AT_rich Low_complexity Low_complexity 1 28 0 527 187 183 57 chr9 108820536 108820766 -33450678 - MER112 DNA MER1_type -1 259 1 368 251 42 21 chr9 108821249 108821440 -33450004 - L1ME4a LINE L1 -201 5920 5726 3227 80 0 5 chr9 108822142 108822580 -33448864 + MLT2A1 LTR ERVL 9 444 0 265 331 80 26 chr9 108822977 108823128 -33448316 + L2 LINE L2 3155 3313 0 689 311 84 80 chr9 108824062 108824407 -33447037 + L2 LINE L2 1804 2146 -1168 2260 121 0 3 chr9 108824407 108824720 -33446724 - AluSq SINE Alu -1 312 1 689 311 84 80 chr9 108824720 108825171 -33446273 + L2 LINE L2 2146 2603 -711 1436 208 3 22 chr9 108825250 108825563 -33445881 + AluJb SINE Alu 1 307 -5 1877 108 26 65 chr9 108825746 108826053 -33445391 - AluSg SINE Alu -15 295 1 2192 234 45 18 chr9 108826397 108826947 -33444497 + MLT1F1 LTR MaLR 3 567 0 231 91 0 0 chr9 108827007 108827040 -33444404 + MLT1F LTR MaLR 510 542 0 691 258 52 65 chr9 108827368 108827616 -33443828 + MIR SINE MIR 18 262 0 215 267 11 100 chr9 108827607 108827697 -33443747 + L2 LINE L2 3186 3267 -5 * 380 182 0 0 chr9 108827993 108828059 -33443385 - L2 LINE L2 -8 3305 3240 309 276 67 37 chr9 108828064 108828198 -33443246 - L2 LINE L2 -1 3312 3175 2038 162 37 36 chr9 108828211 108828762 -33442682 + MLT2A2 LTR ERVL 3 554 0 859 140 7 22 chr9 108829001 108829137 -33442307 + AluJo SINE Alu 1 134 -178 245 263 220 35 chr9 108829783 108830015 -33441429 + L3b LINE CR1 1102 1376 -207 313 289 31 8 chr9 108830614 108830742 -33440702 + L1ME4a LINE L1 5991 6121 0 264 320 151 52 chr9 108830853 108831144 -33440300 - L2 LINE L2 -34 3238 2919 202 284 182 11 chr9 108831645 108831733 -33439711 + MIR3 SINE MIR 90 192 -16 486 242 181 6 chr9 108833606 108833788 -33437656 - MIR SINE MIR 0 262 49 236 291 243 19 chr9 108834380 108834586 -33436858 - MIR SINE MIR -1 261 10 279 226 16 0 chr9 108835367 108835429 -33436015 - MIR SINE MIR -108 154 92 492 257 67 60 chr9 108835477 108835687 -33435757 - MIR SINE MIR -1 261 54 707 256 41 31 chr9 108835694 108835789 -33435655 + MIR SINE MIR 35 128 -134 2247 124 34 6 chr9 108835789 108836143 -33435301 + THE1B LTR MaLR 1 364 0 707 256 41 31 chr9 108836143 108836242 -33435202 + MIR SINE MIR 128 231 -31 345 47 0 0 chr9 108836721 108836764 -33434680 + (CA)n Simple_repeat Simple_repeat 2 44 0 2681 159 65 4 chr9 108836876 108837399 -33434045 + L1PB4 LINE L1 5593 6147 -9 252 279 114 45 chr9 108838478 108838654 -33432790 + MIR SINE MIR 28 211 -51 527 264 39 79 chr9 108839084 108839262 -33432182 + MIR SINE MIR 27 197 -65 1399 195 8 16 chr9 108841018 108841269 -33430175 - AluJb SINE Alu -62 250 2 357 253 0 0 chr9 108841305 108841380 -33430064 + MER21B LTR ERV1 20 94 -769 1713 208 137 13 chr9 108841381 108841834 -33429610 + MER21B LTR ERV1 48 556 -307 527 240 29 13 chr9 108842024 108842240 -33429204 + MER21B LTR ERV1 563 852 -11 691 316 77 15 chr9 108842244 108842570 -33428874 + L2 LINE L2 2621 2966 -348 299 276 95 17 chr9 108842621 108842737 -33428707 + MER94 DNA DNA 10 134 0 865 279 50 50 chr9 108842737 108843074 -33428370 + L2 LINE L2 2977 3313 0 266 290 174 36 chr9 108843740 108843878 -33427566 + MIR3 SINE MIR 31 187 -21 233 351 0 0 chr9 108843907 108843981 -33427463 - L2 LINE L2 -10 3303 3230 433 292 110 5 chr9 108844329 108844538 -33426906 - MLT1L LTR MaLR -2 613 383 396 308 87 34 chr9 108844540 108844685 -33426759 - MLT1J1 LTR MaLR 0 450 314 7432 37 0 0 chr9 108844685 108845659 -33425785 - L1PA5 LINE L1 -3 6151 5174 396 308 87 34 chr9 108845659 108845941 -33425503 - MLT1J1 LTR MaLR -136 314 1 1045 177 33 27 chr9 108846225 108846617 -33424827 - LTR47B LTR ERVL 0 443 1 313 228 0 25 chr9 108846651 108846730 -33424714 - MLT1L LTR MaLR -536 79 3 227 261 125 11 chr9 108846731 108846819 -33424625 - L2 LINE L2 -559 2755 2658 357 235 176 24 chr9 108847498 108847668 -33423776 + MLT1J1 LTR MaLR 83 278 -168 526 234 19 16 chr9 108848621 108848797 -33422647 + MLT1E LTR MaLR 1 178 -389 569 270 112 19 chr9 108849273 108849488 -33421956 - MIR SINE MIR -16 246 12 518 332 156 17 chr9 108849626 108850108 -33421336 - L2 LINE L2 -339 2975 2427 1008 265 56 4 chr9 108851413 108851662 -33419782 + MIR SINE MIR 1 262 0 256 229 33 0 chr9 108852115 108852176 -33419268 - MIR SINE MIR -112 150 88 2101 134 3 0 chr9 108852209 108852507 -33418937 + AluSp SINE Alu 1 299 -14 1102 282 138 8 chr9 108853865 108854466 -33416978 + L2 LINE L2 2617 3311 -2 329 157 0 130 chr9 108854664 108854767 -33416677 - L1MD3 LINE L1 -12 7983 7894 3322 164 49 3 chr9 108854767 108855402 -33416042 - L1MA10 LINE L1 -2 6332 5669 180 0 0 0 chr9 108856305 108856325 -33415119 + (A)n Simple_repeat Simple_repeat 1 20 0 436 297 65 13 chr9 108856939 108857094 -33414350 + MIR SINE MIR 29 191 -71 2322 92 10 0 chr9 108857402 108857706 -33413738 + AluY SINE Alu 1 307 -4 402 250 62 56 chr9 108857724 108857868 -33413576 - MIR SINE MIR -70 192 48 447 349 34 0 chr9 108859042 108859191 -33412253 - MIR SINE MIR -62 200 47 342 270 104 72 chr9 108861029 108861251 -33410193 - L2 LINE L2 -2 3311 3083 381 357 91 15 chr9 108861413 108861877 -33409567 - L2 LINE L2 0 3272 2767 840 247 29 64 chr9 108862397 108862741 -33408703 - MER46C DNA MER2_type -1 337 6 368 247 31 0 chr9 108862846 108862943 -33408501 + MER5A DNA MER1_type 89 188 -1 242 250 0 0 chr9 108862946 108862990 -33408454 + L3b LINE CR1 1406 1449 -134 551 310 35 20 chr9 108863590 108863793 -33407651 + MIR SINE MIR 16 221 -41 236 311 156 16 chr9 108863877 108863999 -33407445 + L2 LINE L2 3122 3260 -12 473 175 146 12 chr9 108864038 108864209 -33407235 + MER63 DNA MER1_type 2 195 -866 699 210 34 10 chr9 108864222 108864413 -33407031 + MER58B DNA MER1_type 1 327 -14 286 326 0 0 chr9 108864498 108864587 -33406857 - MER58 DNA MER1_type -2331 89 1 1429 209 106 3 chr9 108864587 108864956 -33406488 + MER63 DNA MER1_type 648 1054 -6 19179 96 21 22 chr9 108866576 108870336 -33401108 - L1PA7 LINE L1 -17 6137 2381 1161 108 0 16 chr9 108870339 108870525 -33400919 + L1PA7 LINE L1 2175 2357 -3789 26 0 0 0 chr9 108870604 108870630 -33400814 + AT_rich Low_complexity Low_complexity 1 26 0 268 303 197 23 chr9 108870680 108870812 -33400632 - L2 LINE L2 -2 3270 3116 324 319 106 37 chr9 108870932 108871205 -33400239 - L1MC4a LINE L1 -1736 6072 5781 349 246 22 8 chr9 108871219 108871353 -33400091 + (TA)n Simple_repeat Simple_repeat 1 136 0 439 322 50 24 chr9 108871455 108871839 -33399605 - L1ME3 LINE L1 -280 5882 5493 475 197 60 0 chr9 108872240 108872357 -33399087 - L1ME3A LINE L1 -10 6160 6037 542 218 7 21 chr9 108872404 108872546 -33398898 - L1MD3 LINE L1 -18 7977 7838 * 2523 209 62 45 chr9 108872518 108873319 -33398125 + L1MC4a LINE L1 6846 7660 -148 27 29 0 0 chr9 108873319 108873353 -33398091 + AT_rich Low_complexity Low_complexity 1 34 0 392 263 40 46 chr9 108873427 108873579 -33397865 - MIR SINE MIR -104 158 8 22 88 0 0 chr9 108874182 108874239 -33397205 + AT_rich Low_complexity Low_complexity 1 57 0 1763 151 119 0 chr9 108874363 108874674 -33396770 + MER7A DNA MER2_type 1 346 0 326 338 0 0 chr9 108876254 108876331 -33395113 - L3 LINE CR1 -84 1493 1417 260 315 117 40 chr9 108876457 108876679 -33394765 - L3 LINE CR1 -203 1374 1136 229 371 26 7 chr9 108877235 108877386 -33394058 + L2 LINE L2 3149 3302 -11 490 267 7 7 chr9 108878171 108878306 -33393138 - LTR16C LTR ERVL 0 491 357 484 240 0 29 chr9 108878896 108879000 -33392444 + MIR SINE MIR 2 102 -160 256 246 0 0 chr9 108878998 108879055 -33392389 - MIR SINE MIR -127 135 79 * 285 245 0 0 chr9 108879095 108879148 -33392296 - MIR SINE MIR -158 104 52 196 292 169 0 chr9 108879354 108879443 -33392001 - MIR SINE MIR -2 260 157 254 228 18 0 chr9 108879448 108879505 -33391939 - LTR16C LTR ERVL 0 491 434 345 154 62 0 chr9 108879505 108879570 -33391874 + Tigger2 DNA MER2_type 1 69 -2649 * 2057 168 68 2 chr9 108879568 108879980 -33391464 + Tigger2 DNA MER2_type 2280 2718 0 787 310 70 6 chr9 108879980 108880325 -33391119 - LTR16C LTR ERVL -51 440 73 436 282 16 69 chr9 108880338 108880526 -33390918 - MIR3 SINE MIR -28 180 3 1917 168 48 65 chr9 108880677 108881152 -33390292 + MLT1C LTR MaLR 1 467 0 419 285 177 6 chr9 108882725 108882883 -33388561 - MER5A DNA MER1_type -1 188 4 258 250 67 0 chr9 108883000 108883060 -33388384 - L2 LINE L2 0 3313 3250 252 340 47 0 chr9 108884998 108885104 -33386340 + L2 LINE L2 1978 2088 -1226 * 416 215 93 19 chr9 108885102 108885209 -33386235 + L2 LINE L2 3197 3311 -2 509 314 44 12 chr9 108886525 108886777 -33384667 - MIR SINE MIR -1 261 2 404 280 50 0 chr9 108886913 108887013 -33384431 - MIR SINE MIR -2 260 156 242 325 26 0 chr9 108887124 108887201 -33384243 - MIR SINE MIR -96 112 34 188 0 74 0 chr9 108889050 108889077 -33382367 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7108 46 7 0 chr9 108889080 108890661 -33380783 - L1PA5 LINE L1 -9 6145 4554 6740 37 1 0 chr9 108890662 108891518 -33379926 + L1P LINE L1 3585 4441 -1705 449 314 58 31 chr9 108891526 108891717 -33379727 + L2 LINE L2 3118 3313 0 23 0 0 0 chr9 108891844 108891867 -33379577 + AT_rich Low_complexity Low_complexity 1 23 0 575 283 48 6 chr9 108892644 108892810 -33378634 - MIR SINE MIR -70 192 20 5950 104 18 2 chr9 108892978 108894307 -33377137 + L1PA13 LINE L1 4801 6157 -6 2404 59 0 0 chr9 108895198 108895503 -33375941 + L1PA5 LINE L1 5850 6154 0 361 333 101 19 chr9 108895724 108895883 -33375561 + MIR SINE MIR 2 173 -89 260 317 29 0 chr9 108896404 108896508 -33374936 + MIR3 SINE MIR 15 121 -87 595 223 14 22 chr9 108896860 108896999 -33374445 - MIR SINE MIR -18 244 107 421 321 98 5 chr9 108897684 108897868 -33373576 - MIR SINE MIR -15 247 47 469 330 62 48 chr9 108898376 108898734 -33372710 + L2 LINE L2 2503 2865 -449 218 384 33 33 chr9 108898786 108898937 -33372507 + L2 LINE L2 2909 3059 -213 * 431 299 100 46 chr9 108898934 108899195 -33372249 + L3 LINE CR1 1250 1524 -53 269 304 0 0 chr9 108899288 108899367 -33372077 + CT-rich Low_complexity Low_complexity 2 80 0 459 269 105 18 chr9 108899859 108900030 -33371414 - L2 LINE L2 0 3313 3128 1041 280 10 29 chr9 108900045 108900249 -33371195 - MLT1I LTR MaLR -18 391 194 2528 59 0 0 chr9 108900249 108900553 -33370891 + AluY SINE Alu 1 304 -7 1041 280 10 29 chr9 108900553 108900659 -33370785 - MLT1I LTR MaLR -215 194 87 401 316 62 26 chr9 108900771 108900964 -33370480 - L2 LINE L2 -301 3012 2813 896 295 64 24 chr9 108900984 108901282 -33370162 - L2 LINE L2 -18 3295 2986 1999 161 0 7 chr9 108901306 108901611 -33369833 + AluSx SINE Alu 1 303 -9 2089 265 80 80 chr9 108901634 108902760 -33368684 - L2 LINE L2 -539 2775 1650 190 286 98 80 chr9 108904032 108904144 -33367300 + MIR SINE MIR 34 147 -61 1245 189 27 100 chr9 108904734 108904984 -33366460 + MLT1D LTR MaLR 2 167 -338 1866 120 44 0 chr9 108904984 108905258 -33366186 + AluSx SINE Alu 1 286 -26 1245 189 27 100 chr9 108905258 108905573 -33365871 + MLT1D LTR MaLR 167 503 -2 360 195 182 0 chr9 108905811 108905888 -33365556 + FRAM SINE Alu 72 162 -4 532 328 115 36 chr9 108906538 108907008 -33364436 + HAL1 LINE L1 1050 1556 -951 232 321 0 0 chr9 108907112 108907193 -33364251 + HAL1b LINE L1 558 638 -710 1833 132 27 3 chr9 108907332 108907627 -33363817 + L1PB1 LINE L1 5399 5700 -451 15167 33 0 1 chr9 108907634 108910228 -33361216 - L1PA3 LINE L1 0 6155 3563 5751 31 0 0 chr9 108910228 108910939 -33360505 + L1PA3 LINE L1 2850 3560 -2586 3142 93 5 0 chr9 108910945 108911375 -33360069 + L1PB1 LINE L1 5696 6127 -24 2342 98 48 8 chr9 108911475 108911832 -33359612 + L1PA11 LINE L1 5804 6174 0 206 238 50 0 chr9 108912327 108912428 -33359016 + (TATAA)n Simple_repeat Simple_repeat 5 110 0 261 288 45 9 chr9 108913060 108913171 -33358273 + L1ME LINE L1 5692 5806 -315 188 382 15 0 chr9 108913512 108913580 -33357864 + L2 LINE L2 3243 3311 -2 210 285 0 19 chr9 108914090 108914248 -33357196 + CT-rich Low_complexity Low_complexity 5 159 0 231 231 240 16 chr9 108914474 108914595 -33356849 + MIR SINE MIR 109 256 -6 242 234 172 0 chr9 108915110 108915174 -33356270 - MER5C DNA MER1_type -249 75 1 190 208 113 0 chr9 108915174 108915225 -33356219 - L2 LINE L2 -125 3188 3132 373 314 36 15 chr9 108915425 108915562 -33355882 + L2 LINE L2 3124 3263 -9 213 271 21 0 chr9 108915556 108915604 -33355840 - L2 LINE L2 -83 3189 3141 * 552 196 255 16 chr9 108915611 108915795 -33355649 - MER5C DNA MER1_type 0 324 97 204 67 0 0 chr9 108915796 108915826 -33355618 + (TG)n Simple_repeat Simple_repeat 2 31 0 213 194 0 0 chr9 108915831 108915867 -33355577 - MER5C DNA MER1_type -277 47 12 2096 286 79 27 chr9 108915884 108916922 -33354522 - L2 LINE L2 -103 3210 2060 3175 82 18 0 chr9 108917106 108917544 -33353900 - L1PA8 LINE L1 0 6172 5727 521 327 69 26 chr9 108918167 108918513 -33352931 + L2 LINE L2 2456 2816 -498 195 408 51 0 chr9 108918512 108918610 -33352834 - L2 LINE L2 -58 3214 3112 * 260 239 97 45 chr9 108919570 108919704 -33351740 - MER103 DNA DNA -25 141 1 226 169 42 14 chr9 108919802 108919873 -33351571 + (TTA)n Simple_repeat Simple_repeat 3 75 0 278 294 81 73 chr9 108919987 108920123 -33351321 + L2 LINE L2 3136 3272 0 225 310 14 0 chr9 108920843 108920914 -33350530 + CT-rich Low_complexity Low_complexity 5 76 0 350 250 179 29 chr9 108921506 108921646 -33349798 - L1MC4a LINE L1 -1860 5948 5788 2465 213 82 20 chr9 108921767 108922470 -33348974 - L1ME2 LINE L1 -32 6132 5386 42596 36 21 1 chr9 108922532 108928556 -33342888 - L1PA2 LINE L1 0 6155 4 592 235 67 34 chr9 108928565 108928833 -33342611 - L1ME2 LINE L1 -748 5398 5122 5235 129 47 9 chr9 108928871 108929742 -33341702 - L1PA16 LINE L1 -9 6157 5254 2010 205 26 0 chr9 108929754 108930184 -33341260 - L1 LINE L1 -1063 5083 4643 14614 157 23 11 chr9 108930207 108932023 -33339421 - L1MA3 LINE L1 0 7724 5932 2566 57 0 0 chr9 108932023 108932321 -33339123 - AluY SINE Alu -13 298 1 14614 157 23 11 chr9 108932321 108932509 -33338935 - L1MA3 LINE L1 -1792 5932 5748 2319 99 0 0 chr9 108932509 108932813 -33338631 - AluY SINE Alu -7 304 1 14614 157 23 11 chr9 108932813 108936619 -33334825 - L1MA3 LINE L1 -1976 5748 1843 282 160 0 0 chr9 108936759 108936809 -33334635 + (TTG)n Simple_repeat Simple_repeat 2 51 0 1890 144 0 0 chr9 108936819 108937089 -33334355 - AluSc SINE Alu -39 270 1 5344 225 14 12 chr9 108937136 108938502 -33332942 - L1 LINE L1 -1688 4458 3090 1530 260 77 8 chr9 108938501 108939113 -33332331 - L1ME2 LINE L1 -1050 5096 4443 * 13625 74 10 2 chr9 108939145 108941779 -33329665 - L1PA7 LINE L1 -3 6151 3503 8812 116 43 49 chr9 108941779 108945285 -33326159 - L1PA7 LINE L1 -2552 3594 24 440 308 96 34 chr9 108945300 108945592 -33325852 - L1ME LINE L1 -594 5576 5267 195 42 0 0 chr9 108945953 108945977 -33325467 + (CA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr9 108945977 108946006 -33325438 + AT_rich Low_complexity Low_complexity 1 29 0 464 315 17 11 chr9 108946480 108946658 -33324786 + MLT1I LTR MaLR 19 197 -212 658 157 17 39 chr9 108946693 108947107 -33324337 + CT-rich Low_complexity Low_complexity 1 405 0 473 313 54 6 chr9 108947345 108947511 -33323933 + MIR SINE MIR 11 184 -78 336 133 0 0 chr9 108947527 108947587 -33323857 + (CATA)n Simple_repeat Simple_repeat 2 61 0 279 280 141 55 chr9 108947878 108948104 -33323340 + MIR SINE MIR 15 255 -7 590 59 20 20 chr9 108948516 108948618 -33322826 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 2000 168 29 14 chr9 108948922 108949273 -33322171 + MLT1A1 LTR MaLR 10 365 0 569 85 0 75 chr9 108949621 108949715 -33321729 - FLAM_A SINE Alu -35 107 21 510 224 16 7 chr9 108950101 108950247 -33321197 - L1MD3 LINE L1 0 8041 7890 1384 106 5 5 chr9 108950400 108950588 -33320856 - AluSg/x SINE Alu -20 292 105 1508 264 79 62 chr9 108950588 108952167 -33319277 - L1MDa LINE L1 -3671 2409 798 898 260 127 56 chr9 108952286 108952844 -33318600 - L1MDa LINE L1 -5471 599 2 311 316 86 6 chr9 108952934 108953108 -33318336 - MIR SINE MIR -1 261 74 251 319 0 0 chr9 108954638 108954710 -33316734 - MER63 DNA MER1_type 0 1062 991 * 284 241 0 0 chr9 108954702 108954756 -33316688 - MER63 DNA MER1_type -312 749 696 491 185 10 67 chr9 108956002 108956202 -33315242 + AluJ SINE Alu 54 290 -22 470 271 154 0 chr9 108956477 108956665 -33314779 - LTR33A LTR ERVL 0 523 307 270 234 0 0 chr9 108956664 108956711 -33314733 - LTR33 LTR ERVL -360 161 115 * 382 245 49 0 chr9 108957292 108957394 -33314050 - MIR SINE MIR -81 181 75 210 300 1 110 chr9 108957664 108957782 -33313662 - MIR SINE MIR -25 183 76 714 320 113 27 chr9 108958292 108958736 -33312708 + L2 LINE L2 2832 3313 0 337 365 85 0 chr9 108958736 108958936 -33312508 + L2 LINE L2 2542 2758 -556 2001 199 23 56 chr9 108959052 108959574 -33311870 - MLT1D LTR MaLR 0 505 1 563 208 0 110 chr9 108960171 108960249 -33311195 - MLT1D LTR MaLR -113 392 338 2369 68 7 3 chr9 108960249 108960559 -33310885 - AluY SINE Alu 0 311 1 563 208 0 110 chr9 108960559 108960634 -33310810 - MLT1D LTR MaLR -167 338 256 303 308 60 8 chr9 108960856 108960973 -33310471 + MIR SINE MIR 117 239 -23 2544 152 34 0 chr9 108962773 108963187 -33308257 + MSTC LTR MaLR 1 428 0 905 113 23 17 chr9 108963290 108963467 -33307977 + CT-rich Low_complexity Low_complexity 3 180 0 417 121 0 0 chr9 108963450 108963533 -33307911 + (CTG)n Simple_repeat Simple_repeat 2 84 0 * 261 139 0 0 chr9 108963687 108963730 -33307714 + (TCC)n Simple_repeat Simple_repeat 2 44 0 2044 97 19 0 chr9 108963736 108964005 -33307439 - AluSp SINE Alu -39 274 1 1128 189 30 0 chr9 108964007 108964208 -33307236 - MSTC LTR MaLR -221 207 1 2058 82 41 0 chr9 108964402 108964692 -33306752 - AluSg SINE Alu 0 301 1 186 349 15 15 chr9 108965160 108965226 -33306218 - L2 LINE L2 -16 3256 3191 630 264 3 113 chr9 108965234 108965526 -33305918 - MIR SINE MIR 0 262 3 642 264 0 39 chr9 108965645 108965853 -33305591 + L1MEc LINE L1 1629 1828 -4568 467 125 0 0 chr9 108966024 108966104 -33305340 - L1MA8 LINE L1 -27 6264 6185 489 168 9 56 chr9 108966123 108966230 -33305214 - L1PA16 LINE L1 -8 6158 6057 182 200 0 73 chr9 108966396 108966451 -33304993 + MER5A DNA MER1_type 34 84 -105 276 134 0 20 chr9 108966726 108966776 -33304668 - LTR16A1 LTR ERVL 0 457 416 1404 257 46 22 chr9 108966879 108967525 -33303919 - L1MEc LINE L1 -4106 2290 1629 24604 177 51 42 chr9 108967572 108969473 -33301971 - L1ME1 LINE L1 -8 6158 4277 2074 136 0 7 chr9 108969473 108969774 -33301670 - AluSx SINE Alu -13 299 1 24604 177 51 42 chr9 108969774 108970863 -33300581 - L1ME1 LINE L1 -1889 4277 3200 7287 44 0 0 chr9 108970863 108971890 -33299554 - L1PA5 LINE L1 -1 6153 5128 24604 177 51 42 chr9 108971890 108975046 -33296398 - L1ME1 LINE L1 -2966 3200 11 618 231 57 69 chr9 108975052 108975397 -33296047 - L1MEc LINE L1 -3035 3347 3006 2808 7 0 0 chr9 108975397 108975700 -33295744 + AluYa5 SINE Alu 1 303 -8 618 231 57 69 chr9 108975700 108975773 -33295671 - L1MEc LINE L1 -3376 3006 2934 370 209 10 29 chr9 108975790 108975909 -33295535 - L1M4 LINE L1 -5010 1270 1159 1749 184 12 12 chr9 108976139 108976470 -33294974 + MER44D DNA MER2_type 1 601 -8 28 0 0 0 chr9 108976958 108976986 -33294458 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 108977036 108977061 -33294383 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr9 108977127 108977161 -33294283 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr9 108977566 108977611 -33293833 + AT_rich Low_complexity Low_complexity 1 45 0 225 316 11 0 chr9 108978187 108978282 -33293162 + (TGGA)n Simple_repeat Simple_repeat 4 99 0 230 347 98 19 chr9 108978737 108979002 -33292442 - L1MC/D LINE L1 -2171 5637 5352 726 271 30 87 chr9 108979036 108979564 -33291880 - HAL1 LINE L1 -4 2503 2006 4893 146 26 43 chr9 108979576 108980389 -33291055 - L1PA15 LINE L1 -1 6164 5388 2154 99 0 0 chr9 108980389 108980661 -33290783 - AluSq SINE Alu -41 272 1 4893 146 26 43 chr9 108980661 108981153 -33290291 - L1PA15 LINE L1 -777 5388 4889 1147 288 83 26 chr9 108981273 108982148 -33289296 - L1MEc LINE L1 -4410 2153 1229 585 207 67 0 chr9 108982152 108982316 -33289128 - L1MB3 LINE L1 0 6183 6009 31 26 0 0 chr9 108982321 108982359 -33289085 + AT_rich Low_complexity Low_complexity 1 38 0 1076 119 0 0 chr9 108982363 108982506 -33288938 + AluSg/x SINE Alu 135 277 -35 522 57 0 0 chr9 108982506 108982576 -33288868 + (TA)n Simple_repeat Simple_repeat 2 71 0 588 301 33 38 chr9 108982658 108983057 -33288387 - L1MEc LINE L1 -5534 1029 633 446 298 112 11 chr9 108983669 108983847 -33287597 - MIR SINE MIR -15 247 52 21 0 0 0 chr9 108983874 108983895 -33287549 + AT_rich Low_complexity Low_complexity 1 21 0 475 240 47 39 chr9 108984059 108984188 -33287256 - MIR3 SINE MIR -45 163 34 474 211 22 0 chr9 108985989 108986079 -33285365 + MER58B DNA MER1_type 250 341 0 386 308 80 27 chr9 108986248 108986511 -33284933 + HAL1b LINE L1 450 726 -622 2102 127 0 0 chr9 108986798 108987090 -33284354 - AluSx SINE Alu -6 306 15 374 311 83 16 chr9 108987221 108987414 -33284030 + MLT1I LTR MaLR 1 206 -203 317 265 99 50 chr9 108988021 108988202 -33283242 - L2 LINE L2 -1307 2007 1818 347 352 28 28 chr9 108988497 108988673 -33282771 - L3 LINE CR1 -224 1353 1178 246 373 73 17 chr9 108988789 108988966 -33282478 + L3 LINE CR1 178 364 -1213 445 298 45 34 chr9 108989179 108989357 -33282087 + MER5A DNA MER1_type 2 181 -8 213 366 142 41 chr9 108989374 108990169 -33281275 + L2 LINE L2 2185 3084 -188 1046 297 42 11 chr9 108990430 108990811 -33280633 + L3 LINE CR1 563 955 -622 1102 323 98 30 chr9 108991040 108992046 -33279398 - L2 LINE L2 0 3313 2228 433 245 43 92 chr9 108992200 108992384 -33279060 - MLT1L LTR MaLR -2 613 439 21 0 0 0 chr9 108992500 108992521 -33278923 + AT_rich Low_complexity Low_complexity 1 21 0 655 264 100 28 chr9 108992557 108993149 -33278295 - L1MC4 LINE L1 -140 7902 7247 180 289 33 83 chr9 108993822 108993888 -33277556 - L2 LINE L2 -18 3295 3227 1472 157 65 23 chr9 108993888 108994149 -33277295 + AluJo SINE Alu 24 295 -17 2234 116 0 6 chr9 108994149 108994460 -33276984 + AluSg SINE Alu 1 309 -1 180 289 33 83 chr9 108994460 108994513 -33276931 - L2 LINE L2 -84 3229 3181 448 252 31 8 chr9 108994586 108994713 -33276731 - MIR SINE MIR -44 218 89 364 315 0 54 chr9 108994801 108994950 -33276494 - L2 LINE L2 -189 3083 2943 186 103 0 0 chr9 108995805 108995834 -33275610 + (T)n Simple_repeat Simple_repeat 1 29 0 314 270 22 0 chr9 108996064 108996153 -33275291 + (TATG)n Simple_repeat Simple_repeat 4 94 0 696 167 35 0 chr9 108997839 108997953 -33273491 - FLAM_C SINE Alu -15 118 1 280 304 13 0 chr9 108997963 108998042 -33273402 + CT-rich Low_complexity Low_complexity 1 80 0 260 381 12 12 chr9 108998439 108998607 -33272837 + MIR3 SINE MIR 32 199 -9 447 281 69 44 chr9 108999368 108999562 -33271882 + MIR SINE MIR 34 233 -29 319 225 22 79 chr9 109000354 109000443 -33271001 - MIR SINE MIR -100 162 79 221 267 19 57 chr9 109001351 109001456 -33269988 - MIR SINE MIR -6 256 156 615 258 48 38 chr9 109001724 109001933 -33269511 + MIR SINE MIR 4 214 -48 243 0 0 0 chr9 109001941 109001968 -33269476 + (CA)n Simple_repeat Simple_repeat 2 28 0 377 130 78 78 chr9 109001969 109002046 -33269398 + Tigger3(Golem) DNA MER2_type 4 80 -2949 489 214 68 0 chr9 109002181 109002284 -33269160 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 23 54 0 0 chr9 109003393 109003430 -33268014 + AT_rich Low_complexity Low_complexity 1 37 0 432 316 91 11 chr9 109004207 109004394 -33267050 + MIR SINE MIR 46 247 -15 248 358 22 7 chr9 109004410 109004547 -33266897 + MIR SINE MIR 78 216 -46 1171 184 0 34 chr9 109004908 109005142 -33266302 - AluJb SINE Alu 0 312 87 262 356 43 0 chr9 109005178 109005293 -33266151 - L2 LINE L2 0 3272 3153 247 325 57 8 chr9 109005434 109005557 -33265887 + MIR SINE MIR 64 192 -70 470 314 33 0 chr9 109005769 109005922 -33265522 - MIR SINE MIR -56 206 49 2057 264 41 34 chr9 109006375 109007280 -33264164 - L2 LINE L2 -4 3309 2395 248 250 29 44 chr9 109008223 109008291 -33263153 - L2 LINE L2 0 3272 3206 1552 300 167 29 chr9 109008363 109009577 -33261867 - L2 LINE L2 -42 3271 1868 505 371 121 9 chr9 109009872 109010335 -33261109 - L2 LINE L2 -546 2768 2254 312 27 0 0 chr9 109010392 109010429 -33261015 + (TA)n Simple_repeat Simple_repeat 2 38 0 236 356 133 46 chr9 109010504 109010833 -33260611 - L2 LINE L2 -1460 1854 1555 2408 91 0 0 chr9 109010833 109011131 -33260313 + AluY SINE Alu 1 298 -13 236 356 133 46 chr9 109011131 109011832 -33259612 - L2 LINE L2 -1759 1555 704 185 0 0 39 chr9 109011832 109011858 -33259586 + (AAGTG)n Simple_repeat Simple_repeat 3 27 0 236 356 133 46 chr9 109011858 109012019 -33259425 - L2 LINE L2 -2610 704 558 193 372 48 21 chr9 109013714 109013859 -33257585 + L2 LINE L2 2771 2919 -395 1529 162 24 24 chr9 109014074 109014364 -33257080 - MLT2C1 LTR ERVL -107 290 1 727 280 58 18 chr9 109014511 109014893 -33256551 + L1ME2 LINE L1 2429 2825 -3321 1835 277 132 9 chr9 109014994 109015532 -33255912 - MLT2F LTR ERVL -59 604 1 715 202 41 28 chr9 109015535 109015753 -33255691 + L1ME2 LINE L1 2839 3059 -3087 1479 271 84 27 chr9 109015815 109016706 -33254738 + L1ME2 LINE L1 3182 4123 -2023 2689 216 92 17 chr9 109016735 109017595 -33253849 + L1ME2 LINE L1 5220 6145 -19 21 57 0 0 chr9 109018342 109018377 -33253067 + AT_rich Low_complexity Low_complexity 1 35 0 2307 78 0 3 chr9 109018381 109018690 -33252754 + AluY SINE Alu 1 308 -3 776 283 77 18 chr9 109018714 109019050 -33252394 - L1MC4 LINE L1 -980 7062 6707 8098 125 27 2 chr9 109019061 109020326 -33251118 + HSMAR2 DNA Mariner 6 1301 -1 244 269 191 7 chr9 109020988 109021129 -33250315 - MLT1L LTR MaLR -431 184 18 875 133 0 22 chr9 109022925 109023060 -33248384 - FLAM_C SINE Alu 0 133 2 202 330 18 18 chr9 109023310 109023419 -33248025 + MIR SINE MIR 80 188 -74 412 365 157 6 chr9 109023456 109023768 -33247676 + L3 LINE CR1 1208 1566 -11 5707 164 32 7 chr9 109024052 109025193 -33246251 - L1 LINE L1 -1840 4306 3138 567 333 84 8 chr9 109025424 109025661 -33245783 + MIR SINE MIR 2 256 -6 2298 100 0 0 chr9 109025776 109026076 -33245368 - AluY SINE Alu -11 300 1 219 204 20 0 chr9 109026128 109026177 -33245267 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 181 324 89 58 chr9 109026798 109027023 -33244421 - L2 LINE L2 -337 2977 2746 224 227 0 0 chr9 109027232 109027276 -33244168 + CT-rich Low_complexity Low_complexity 2 45 0 33 25 0 0 chr9 109028998 109029038 -33242406 + AT_rich Low_complexity Low_complexity 1 40 0 588 275 12 19 chr9 109029058 109029218 -33242226 + MIR SINE MIR 5 163 -99 282 216 0 40 chr9 109029213 109029287 -33242157 - MIR SINE MIR -26 236 166 * 189 346 0 13 chr9 109029294 109029372 -33242072 + MIR SINE MIR 185 261 -1 388 335 28 22 chr9 109029402 109029584 -33241860 - MIR SINE MIR -59 203 21 306 0 0 0 chr9 109030715 109030749 -33240695 + (A)n Simple_repeat Simple_repeat 1 34 0 801 156 0 0 chr9 109032200 109032328 -33239116 - AluSg/x SINE Alu -6 306 179 322 315 162 25 chr9 109032924 109033159 -33238285 + L3 LINE CR1 483 749 -828 1896 124 7 7 chr9 109033166 109033465 -33237979 + L1MC1 LINE L1 6026 6324 -9 1128 200 4 0 chr9 109033482 109033712 -33237732 + L1MB3 LINE L1 5953 6183 0 240 200 0 0 chr9 109035393 109035448 -33235996 + CT-rich Low_complexity Low_complexity 4 58 0 1330 19 0 0 chr9 109035687 109035847 -33235597 + L1P LINE L1 5040 5199 -947 183 343 153 37 chr9 109036971 109037187 -33234257 + L2 LINE L2 3030 3270 -2 1075 275 95 14 chr9 109037215 109037659 -33233785 + L2 LINE L2 2759 3282 -31 29 28 0 0 chr9 109038216 109038252 -33233192 + AT_rich Low_complexity Low_complexity 1 36 0 255 385 33 25 chr9 109038550 109038672 -33232772 - L2 LINE L2 0 3272 3150 201 147 0 0 chr9 109038945 109038979 -33232465 + (T)n Simple_repeat Simple_repeat 1 34 0 369 335 25 62 chr9 109039646 109039885 -33231559 + MIR SINE MIR 17 250 -12 314 278 22 0 chr9 109040006 109040096 -33231348 + MIR SINE MIR 56 147 -61 700 298 29 33 chr9 109040187 109040429 -33231015 + MIR SINE MIR 18 258 -4 22 0 0 0 chr9 109041183 109041205 -33230239 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr9 109041300 109041322 -33230122 + AT_rich Low_complexity Low_complexity 1 22 0 424 287 66 88 chr9 109041613 109042246 -33229198 + L2 LINE L2 2605 3269 -3 262 316 181 7 chr9 109042815 109042970 -33228474 - MIR SINE MIR 0 262 81 922 274 32 42 chr9 109042989 109043299 -33228145 - MLT1I LTR MaLR -23 386 80 235 324 0 29 chr9 109043401 109043469 -33227975 - MIR SINE MIR -127 81 16 210 305 17 0 chr9 109044203 109044262 -33227182 - L2 LINE L2 -4 3268 3209 459 320 86 62 chr9 109044672 109045175 -33226269 + L2 LINE L2 2263 2777 -537 183 345 59 50 chr9 109045351 109045470 -33225974 + L2 LINE L2 2976 3095 -177 208 302 163 0 chr9 109045562 109045691 -33225753 - MIR SINE MIR -66 196 47 318 327 5 24 chr9 109046381 109046524 -33224920 - MER5B DNA MER1_type 0 178 49 377 274 51 34 chr9 109046886 109047003 -33224441 - MIR SINE MIR -74 134 16 27 0 0 0 chr9 109047354 109047381 -33224063 + AT_rich Low_complexity Low_complexity 1 27 0 258 221 58 0 chr9 109048120 109048206 -33223238 - L1ME4a LINE L1 -188 5933 5843 322 245 75 19 chr9 109049730 109049836 -33221608 + MIR SINE MIR 37 148 -60 314 355 174 26 chr9 109050035 109050455 -33220989 + L2 LINE L2 2793 3272 0 311 265 10 41 chr9 109051543 109051641 -33219803 + MIR SINE MIR 81 175 -87 23 0 0 0 chr9 109052105 109052128 -33219316 + AT_rich Low_complexity Low_complexity 1 23 0 278 261 0 0 chr9 109052128 109052193 -33219251 - L2 LINE L2 -4 3268 3204 2439 87 3 0 chr9 109052505 109052814 -33218630 + AluSp SINE Alu 1 310 -3 189 354 13 0 chr9 109052825 109052904 -33218540 - L2 LINE L2 -526 2788 2709 657 299 80 37 chr9 109053413 109053738 -33217706 + MLT1I LTR MaLR 9 347 -62 742 198 30 110 chr9 109053741 109053804 -33217640 - MER20 DNA MER1_type -1 218 152 1688 131 75 72 chr9 109053804 109054178 -33217266 + THE1C LTR MaLR 1 375 0 742 198 30 110 chr9 109054178 109054351 -33217093 - MER20 DNA MER1_type -67 152 1 257 281 47 0 chr9 109054867 109054931 -33216513 + MIR SINE MIR 196 262 0 195 330 183 9 chr9 109054993 109055108 -33216336 + L2 LINE L2 3138 3272 0 259 292 84 78 chr9 109055365 109055519 -33215925 + MIR SINE MIR 30 184 -78 449 337 74 23 chr9 109056423 109056681 -33214763 + L3 LINE CR1 1232 1502 -75 206 368 0 0 chr9 109056707 109056764 -33214680 - L3 LINE CR1 -45 1532 1476 232 292 31 15 chr9 109057558 109057623 -33213821 - MIR SINE MIR -142 120 55 310 245 28 98 chr9 109058097 109058240 -33213204 - MIR SINE MIR -67 195 63 21 57 0 0 chr9 109058496 109058531 -33212913 + AT_rich Low_complexity Low_complexity 1 35 0 398 191 133 19 chr9 109059855 109059960 -33211484 + MER3 DNA MER1_type 93 209 0 322 189 0 0 chr9 109059917 109059970 -33211474 - MER3 DNA MER1_type -119 90 38 * 380 355 82 7 chr9 109060046 109060339 -33211105 + L1MC/D LINE L1 5432 5746 -2062 644 296 89 0 chr9 109060684 109060887 -33210557 + MIR SINE MIR 18 238 -24 371 256 98 0 chr9 109061038 109061171 -33210273 - L1M4 LINE L1 -878 5268 5123 278 314 95 40 chr9 109061223 109061475 -33209969 + Charlie8 DNA MER1_type 142 407 -2010 386 283 14 2 chr9 109061861 109061965 -33209479 - MIR SINE MIR -70 138 33 483 349 54 22 chr9 109062095 109062648 -33208796 - L1M4 LINE L1 -2761 3385 2815 342 273 47 60 chr9 109062648 109062798 -33208646 + MLT1I LTR MaLR 1 147 -262 5397 10 0 2 chr9 109062920 109063531 -33207913 + L1PA2 LINE L1 5545 6154 -1 186 43 0 0 chr9 109064691 109064714 -33206730 + (TG)n Simple_repeat Simple_repeat 2 24 0 410 221 98 16 chr9 109065634 109065756 -33205688 + MIR SINE MIR 66 197 -65 643 251 64 6 chr9 109066879 109067050 -33204394 - MLT1I LTR MaLR -4 405 225 231 296 88 40 chr9 109067086 109067211 -33204233 - L2 LINE L2 -560 2754 2624 216 158 0 0 chr9 109069465 109069503 -33201941 + GA-rich Low_complexity Low_complexity 4 41 0 583 297 49 16 chr9 109069816 109070001 -33201443 - MIR SINE MIR -19 243 53 186 328 123 49 chr9 109070244 109070366 -33201078 + MIR SINE MIR 113 243 -19 230 263 73 0 chr9 109070792 109070853 -33200591 - MIR SINE MIR -55 153 95 1828 213 73 40 chr9 109071033 109071530 -33199914 + L1MD3 LINE L1 4633 5112 -1054 1954 145 3 0 chr9 109071530 109071819 -33199625 + AluSx SINE Alu 1 290 -22 1828 213 73 40 chr9 109071819 109071872 -33199572 + L1MD3 LINE L1 5112 5162 -1004 2164 107 0 55 chr9 109071872 109072199 -33199245 + AluSx SINE Alu 3 311 -1 1828 213 73 40 chr9 109072199 109073113 -33198331 + L1MD3 LINE L1 5162 6161 -5 216 67 0 0 chr9 109074607 109074637 -33196807 + (TG)n Simple_repeat Simple_repeat 2 31 0 465 313 104 10 chr9 109074900 109075101 -33196343 + MIR SINE MIR 19 238 -24 2207 164 13 18 chr9 109075200 109075584 -33195860 - MLT1B LTR MaLR 0 390 9 255 203 0 0 chr9 109075812 109075876 -33195568 + (TA)n Simple_repeat Simple_repeat 2 65 0 364 270 90 9 chr9 109075896 109076007 -33195437 + L2 LINE L2 3167 3286 -27 703 316 62 4 chr9 109076993 109077237 -33194207 + MIR SINE MIR 3 260 -2 242 343 10 20 chr9 109077469 109077568 -33193876 - MIR SINE MIR -6 256 159 226 24 0 73 chr9 109077680 109077721 -33193723 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 259 256 188 17 chr9 109077994 109078111 -33193333 + MLT1K LTR MaLR 347 483 -105 453 361 24 0 chr9 109078545 109078711 -33192733 + MIR SINE MIR 23 192 -70 9749 65 13 0 chr9 109078801 109080852 -33190592 - L1PA6 LINE L1 -2 6152 4081 250 172 47 0 chr9 109080937 109081001 -33190443 + (TTA)n Simple_repeat Simple_repeat 3 69 0 257 226 89 32 chr9 109081009 109081133 -33190311 - L1ME4a LINE L1 -31 6090 5960 396 313 139 40 chr9 109081449 109081874 -33189570 - L1ME4a LINE L1 -2037 5771 5305 329 294 84 39 chr9 109081941 109082227 -33189217 - L1ME4a LINE L1 -875 5271 4973 415 333 28 28 chr9 109082402 109082618 -33188826 - MIR SINE MIR -15 247 32 335 299 72 18 chr9 109084301 109084468 -33186976 + MIR3 SINE MIR 9 184 -24 1680 271 47 42 chr9 109084929 109085667 -33185777 + L1M3f LINE L1 6 679 -4820 1139 234 47 0 chr9 109085679 109085953 -33185491 + L1 LINE L1 4913 5199 -947 360 303 42 17 chr9 109085990 109086109 -33185335 - MIR SINE MIR -109 153 32 2398 242 61 12 chr9 109086330 109087279 -33184165 + L1MD2 LINE L1 2486 3478 -3062 * 4966 132 46 45 chr9 109087270 109088283 -33183161 + L1PB4 LINE L1 5137 6153 -3 3888 242 61 42 chr9 109088277 109089945 -33181499 + L1MD2 LINE L1 3475 5173 -1367 * 1374 148 55 72 chr9 109089952 109090242 -33181202 + AluSx SINE Alu 9 293 -19 1054 127 0 19 chr9 109090326 109090483 -33180961 - AluSg/x SINE Alu -24 286 133 4311 217 71 16 chr9 109090487 109091730 -33179714 + L1MD2 LINE L1 5243 6569 -184 225 0 0 0 chr9 109091730 109091755 -33179689 + (CA)n Simple_repeat Simple_repeat 1 25 0 4311 217 71 16 chr9 109091755 109091929 -33179515 + L1MD2 LINE L1 6569 6732 -21 28 71 0 0 chr9 109091929 109091985 -33179459 + AT_rich Low_complexity Low_complexity 1 56 0 2144 168 5 5 chr9 109091992 109092380 -33179064 - L1PB3 LINE L1 -2 6803 6416 9686 223 34 29 chr9 109092480 109092679 -33178765 - L1PB3 LINE L1 -579 6237 6040 2401 103 0 0 chr9 109092679 109092991 -33178453 - AluSq SINE Alu -1 312 1 9686 223 34 29 chr9 109092991 109098567 -33172877 - L1PB3 LINE L1 -776 6040 1 2216 251 116 74 chr9 109098618 109099204 -33172240 - HAL1 LINE L1 -539 1968 1408 2504 61 0 0 chr9 109099204 109099498 -33171946 - AluY SINE Alu -17 294 1 2216 251 116 74 chr9 109099498 109100323 -33171121 - HAL1 LINE L1 -1099 1408 498 8765 181 59 16 chr9 109100438 109102813 -33168631 - L1M2 LINE L1 -514 6737 4260 1159 189 25 119 chr9 109102813 109103216 -33168228 - MLT1A1 LTR MaLR 0 365 1 1700 176 16 78 chr9 109103216 109103602 -33167842 - MLT1A1-int LTR MaLR 0 1735 1374 4891 90 21 6 chr9 109103621 109104342 -33167102 - L1PB1 LINE L1 -2 6149 5418 1883 172 35 9 chr9 109104442 109104785 -33166659 - MLT1A1-int LTR MaLR -1360 375 24 893 195 75 127 chr9 109104828 109105134 -33166310 - MLT1A1 LTR MaLR 0 365 82 2265 132 86 8 chr9 109105134 109105528 -33165916 - MSTA LTR MaLR 0 428 4 893 195 75 127 chr9 109105528 109105606 -33165838 - MLT1A1 LTR MaLR -283 82 1 3618 247 53 57 chr9 109105631 109108845 -33162599 - L1M2 LINE L1 -2867 4239 73 1132 68 0 197 chr9 109108848 109109097 -33162347 - THE1C-int LTR MaLR -1376 204 5 1709 147 85 21 chr9 109109113 109109453 -33161991 - THE1C LTR MaLR -13 362 1 4269 98 21 10 chr9 109109660 109110284 -33161160 + L1PA11 LINE L1 5537 6167 -7 394 298 87 70 chr9 109110316 109110699 -33160745 - L1 LINE L1 -2286 3860 3470 3558 39 5 0 chr9 109110699 109111134 -33160310 - L1PA4 LINE L1 -3 6152 5716 394 298 87 70 chr9 109111134 109111341 -33160103 - L1 LINE L1 -2676 3470 3268 257 329 0 0 chr9 109111737 109111810 -33159634 - MIR SINE MIR -55 153 81 248 314 129 0 chr9 109112519 109112643 -33158801 + L2 LINE L2 2815 2954 -359 1691 247 39 61 chr9 109112645 109113233 -33158211 - MLT1E2 LTR MaLR 0 626 52 901 275 48 36 chr9 109113289 109113623 -33157821 + L2 LINE L2 2976 3313 0 413 359 39 34 chr9 109113901 109114146 -33157298 + MIR3 SINE MIR 3 246 -16 203 352 11 23 chr9 109114602 109114690 -33156754 + MIR SINE MIR 36 122 -86 502 290 45 1 chr9 109114757 109114940 -33156504 - MIR SINE MIR 0 262 74 228 293 33 60 chr9 109114947 109115097 -33156347 - L3 LINE CR1 -795 782 637 350 220 33 11 chr9 109115100 109115191 -33156253 + L2 LINE L2 3221 3313 0 2162 124 3 7 chr9 109115298 109115605 -33155839 - AluSc SINE Alu -3 306 1 209 380 18 0 chr9 109115615 109115728 -33155716 - L3 LINE CR1 -1081 496 382 476 297 97 74 chr9 109116573 109116883 -33154561 + HAL1 LINE L1 1846 2162 -345 619 283 162 66 chr9 109116905 109117404 -33154040 + MLT1H LTR MaLR 3 549 0 413 245 178 35 chr9 109117404 109117690 -33153754 + HAL1 LINE L1 2180 2506 -1 2266 100 0 0 chr9 109118083 109118372 -33153072 + AluSx SINE Alu 3 291 -21 426 39 0 0 chr9 109118372 109118424 -33153020 + (TA)n Simple_repeat Simple_repeat 2 53 0 5215 84 7 8 chr9 109118909 109119732 -33151712 - L1PB1 LINE L1 -157 5994 5172 1744 257 110 39 chr9 109119733 109120277 -33151167 - MLT-int LTR MaLR -346 1389 807 340 49 0 0 chr9 109170285 109170326 -33101118 + Tigger4(Zombi) DNA MER2_type 2690 2730 -1 2130 111 3 0 chr9 109171196 109171484 -33099960 - AluSc SINE Alu -20 289 1 2156 96 10 0 chr9 109171792 109172095 -33099349 - AluY SINE Alu -5 306 1 34 24 0 0 chr9 109172273 109172314 -33099130 + AT_rich Low_complexity Low_complexity 1 41 0 34 24 0 0 chr9 109172528 109172569 -33098875 + AT_rich Low_complexity Low_complexity 1 41 0 352 351 68 4 chr9 109172861 109173109 -33098335 - L1ME LINE L1 -594 5572 5309 5286 65 6 4 chr9 109173131 109173828 -33097616 - L1PA7 LINE L1 0 6154 5457 1515 206 37 14 chr9 109173928 109174278 -33097166 + MLT1C LTR MaLR 110 467 0 815 232 67 93 chr9 109174278 109174520 -33096924 + L1ME LINE L1 5403 5633 -537 2079 111 0 23 chr9 109174520 109174827 -33096617 + AluSc SINE Alu 1 300 -9 815 232 67 93 chr9 109174827 109174959 -33096485 + L1ME LINE L1 5633 5767 -403 2759 132 17 0 chr9 109176300 109176762 -33094682 + L1MA4 LINE L1 5827 6296 -4 209 219 0 16 chr9 109176864 109176928 -33094516 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 2266 106 0 0 chr9 109177108 109177400 -33094044 - AluSg SINE Alu -18 292 1 198 71 0 0 chr9 109177417 109177445 -33093999 + (TA)n Simple_repeat Simple_repeat 2 29 0 1254 148 20 0 chr9 109177667 109177869 -33093575 + MER46B DNA MER2_type 1 81 -155 21 0 0 0 chr9 109178140 109178161 -33093283 + AT_rich Low_complexity Low_complexity 1 21 0 2372 152 40 99 chr9 109178634 109179181 -33092263 - MLT2B2 LTR ERVL 0 515 1 323 169 84 12 chr9 109179347 109179430 -33092014 - L1MC4 LINE L1 -1339 6703 6615 294 204 32 11 chr9 109179433 109179526 -33091918 + (TA)n Simple_repeat Simple_repeat 1 95 0 1983 214 27 20 chr9 109179526 109179969 -33091475 + MER82 DNA MER2_type 207 652 -1 1801 42 0 0 chr9 109180032 109180249 -33091195 + L1P LINE L1 1854 2070 -4076 932 150 7 0 chr9 109180351 109180491 -33090953 - AluSq/x SINE Alu -172 141 1 1702 201 91 44 chr9 109181430 109181912 -33089532 - MLT1D LTR MaLR 0 505 1 361 291 10 0 chr9 109181913 109182016 -33089428 - MIR SINE MIR -75 133 30 2265 97 7 0 chr9 109183074 109183383 -33088061 + AluY SINE Alu 1 311 0 1284 113 11 5 chr9 109183497 109183682 -33087762 + AluSx SINE Alu 11 196 -116 764 312 133 22 chr9 109184300 109184902 -33086542 + L2 LINE L2 2639 3313 0 437 268 36 14 chr9 109184961 109185099 -33086345 - MIR SINE MIR -71 191 51 245 351 35 23 chr9 109185346 109185520 -33085924 + L1ME LINE L1 5724 5899 -222 250 281 48 10 chr9 109185537 109185641 -33085803 + L1ME LINE L1 147 259 -5946 348 284 68 20 chr9 109186515 109186765 -33084679 + L1ME LINE L1 1135 1396 -5000 2358 107 25 125 chr9 109186797 109187276 -33084168 + MER4A LTR ERV1 1 431 -233 530 84 244 53 chr9 109187287 109187418 -33084026 + MER4C LTR ERV1 277 432 -33 789 323 19 11 chr9 109187425 109187794 -33083650 + L1ME LINE L1 1387 1758 -4638 3134 142 2 4 chr9 109188152 109188661 -33082783 - MER75 DNA T2_type -4 510 3 218 128 83 9 chr9 109188804 109188913 -33082531 + (TA)n Simple_repeat Simple_repeat 2 118 0 208 151 57 0 chr9 109188955 109189008 -33082436 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 446 99 70 23 chr9 109189011 109189182 -33082262 + (TA)n Simple_repeat Simple_repeat 2 180 0 10758 161 15 31 chr9 109189227 109192008 -33079436 + L1P3 LINE L1 2 2843 -3618 2236 114 0 7 chr9 109192008 109192314 -33079130 - AluSq SINE Alu -8 305 2 10758 161 15 31 chr9 109192314 109192812 -33078632 + L1P3 LINE L1 2843 3348 -3113 287 177 16 0 chr9 109193750 109193812 -33077632 + CT-rich Low_complexity Low_complexity 5 67 0 213 259 37 0 chr9 109193837 109193945 -33077499 + (TA)n Simple_repeat Simple_repeat 1 112 0 4333 24 0 0 chr9 109194434 109194935 -33076509 + L1PA3 LINE L1 5652 6152 -3 183 368 123 9 chr9 109195077 109195191 -33076253 - MIR SINE MIR -62 146 20 686 219 52 41 chr9 109195511 109195870 -33075574 - LTR33 LTR ERVL -5 516 16 453 346 53 10 chr9 109196063 109196271 -33075173 - MIR SINE MIR -30 232 16 246 194 16 0 chr9 109196912 109196974 -33074470 - L1MC4 LINE L1 -1339 6703 6641 275 274 32 21 chr9 109197382 109197477 -33073967 + MIR SINE MIR 94 189 -73 291 165 282 0 chr9 109197717 109197802 -33073642 - L2 LINE L2 -5 3308 3200 400 293 98 49 chr9 109199129 109199334 -33072110 + MIR SINE MIR 10 224 -38 1130 231 108 21 chr9 109199531 109199864 -33071580 - MLT1J LTR MaLR -147 364 3 256 286 36 0 chr9 109200139 109200223 -33071221 + L2 LINE L2 3186 3272 0 198 348 140 6 chr9 109200317 109200495 -33070949 + L2 LINE L2 1320 1521 -1793 1049 294 60 69 chr9 109200546 109200791 -33070653 + L2 LINE L2 1683 1929 -1385 1894 143 7 7 chr9 109200791 109201092 -33070352 - AluSx SINE Alu -1 311 11 1049 294 60 69 chr9 109201092 109201524 -33069920 + L2 LINE L2 1929 2354 -960 230 292 104 21 chr9 109201537 109201633 -33069811 + MIR SINE MIR 99 202 -60 210 298 101 25 chr9 109202563 109202739 -33068705 - MIR SINE MIR 0 262 30 660 253 30 0 chr9 109204905 109205071 -33066373 - MIR SINE MIR -6 256 86 832 124 138 0 chr9 109205569 109205714 -33065730 - L1MA1 LINE L1 0 6302 6138 2176 28 89 14 chr9 109208262 109208544 -33062900 + AluY SINE Alu 1 303 -8 2855 211 56 103 chr9 109208791 109209313 -33062131 + L1MC5 LINE L1 6499 7044 -917 2123 144 50 42 chr9 109209313 109209674 -33061770 + THE1B LTR MaLR 1 364 0 2855 211 56 103 chr9 109209674 109210642 -33060802 + L1MC5 LINE L1 7044 7944 -17 939 225 62 10 chr9 109211676 109211885 -33059559 - MIR SINE MIR -28 234 15 23 0 0 0 chr9 109211992 109212015 -33059429 + AT_rich Low_complexity Low_complexity 1 23 0 1151 164 62 82 chr9 109213821 109214125 -33057319 + MLT1D LTR MaLR 1 298 -207 * 1856 120 155 17 chr9 109214122 109214471 -33056973 + MSTA LTR MaLR 11 407 -21 26325 34 4 1 chr9 109214574 109218362 -33053082 + L1PA4 LINE L1 2359 6155 0 192 40 0 0 chr9 109218381 109218406 -33053038 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 665 291 109 0 chr9 109219140 109219370 -33052074 - MIR SINE MIR 0 262 8 387 315 50 36 chr9 109220842 109221064 -33050380 - MIR SINE MIR -26 236 12 2991 153 17 0 chr9 109221236 109221699 -33049745 - MER101 LTR ERV1 -3 471 1 2080 243 102 8 chr9 109221905 109222530 -33048914 + L1ME3A LINE L1 5470 6153 -17 595 263 103 5 chr9 109224436 109224660 -33046784 - MIR SINE MIR -2 260 15 189 313 22 95 chr9 109224699 109224878 -33046566 + L2 LINE L2 2934 3099 -173 293 312 92 18 chr9 109226214 109226323 -33045121 - L2 LINE L2 -19 3253 3137 378 231 179 45 chr9 109226524 109226680 -33044764 + MER5B DNA MER1_type 2 178 0 237 219 188 23 chr9 109226707 109226835 -33044609 - L2 LINE L2 -459 2855 2707 245 276 41 41 chr9 109227004 109227127 -33044317 + MIR3 SINE MIR 33 155 -53 185 277 133 12 chr9 109227465 109227548 -33043896 - L3b LINE CR1 -11 1572 1480 184 295 53 63 chr9 109227819 109227914 -33043530 + L2 LINE L2 2969 3062 -210 426 377 66 6 chr9 109227980 109228163 -33043281 + L2 LINE L2 3079 3272 0 236 301 56 79 chr9 109228895 109229161 -33042283 + L2 LINE L2 2548 2807 -507 2554 126 22 3 chr9 109229522 109229879 -33041565 + THE1B LTR MaLR 1 364 0 406 274 65 104 chr9 109230136 109230363 -33041081 - MLT1K LTR MaLR -116 472 238 1439 224 33 22 chr9 109230363 109230724 -33040720 - MLT1A1 LTR MaLR 0 365 1 406 274 65 104 chr9 109230724 109230986 -33040458 - MLT1K LTR MaLR -350 238 2 483 291 180 24 chr9 109232615 109233212 -33038232 + L1MEd LINE L1 1225 2001 -742 2230 103 7 0 chr9 109233247 109233538 -33037906 + AluSx SINE Alu 1 293 -19 5566 223 47 12 chr9 109233726 109235203 -33036241 + L1MB8 LINE L1 3654 5181 -965 3688 82 20 10 chr9 109235197 109235699 -33035745 + L1PA11 LINE L1 5522 6028 -146 * 2480 133 121 10 chr9 109235799 109236295 -33035149 - LTR1 LTR ERV1 -234 551 1 298 115 96 0 chr9 109236337 109236389 -33035055 + L1PA11 LINE L1 6117 6173 -1 4302 168 40 47 chr9 109236392 109237403 -33034041 + L1MB8 LINE L1 5171 6176 -2 7076 65 3 86 chr9 109237455 109238246 -33033198 - L1PA7 LINE L1 -3 6151 5296 1935 115 28 14 chr9 109238246 109238533 -33032911 - AluSg1 SINE Alu -18 291 1 7076 65 3 86 chr9 109238533 109238610 -33032834 - L1PA7 LINE L1 -858 5296 5214 2261 84 0 0 chr9 109238610 109238897 -33032547 - AluYa5 SINE Alu -24 287 1 7076 65 3 86 chr9 109238897 109239113 -33032331 - L1PA7 LINE L1 -940 5214 5093 364 306 67 19 chr9 109239147 109239356 -33032088 + L1MEd LINE L1 2258 2476 -3908 564 311 90 37 chr9 109239373 109239456 -33031988 + L1MEd LINE L1 2508 2585 -3797 5190 133 27 5 chr9 109239456 109240296 -33031148 + L1MA5A LINE L1 5439 6297 0 564 311 90 37 chr9 109240296 109240755 -33030689 + L1MEd LINE L1 2585 3079 -3303 23 33 0 0 chr9 109240890 109240920 -33030524 + AT_rich Low_complexity Low_complexity 1 30 0 288 272 222 0 chr9 109241603 109241684 -33029760 - L2 LINE L2 -22 3250 3152 2199 153 6 8 chr9 109242258 109242623 -33028821 - L1MA3 LINE L1 0 6305 5942 605 262 119 0 chr9 109242742 109242910 -33028534 - MIR SINE MIR -42 220 33 207 323 16 0 chr9 109243929 109243991 -33027453 - L2 LINE L2 -9 3263 3201 3987 112 179 77 chr9 109244148 109245550 -33025894 - pTR5 LTR ERV1 0 2438 743 2427 164 63 8 chr9 109245567 109245963 -33025481 + MER47B DNA MER2_type 1 418 0 203 262 96 81 chr9 109246558 109246783 -33024661 + MIR SINE MIR 14 238 -24 399 357 29 0 chr9 109246857 109246997 -33024447 + L2 LINE L2 3123 3266 -6 282 279 195 19 chr9 109247154 109247308 -33024136 - MIR3 SINE MIR -11 197 17 1251 102 12 0 chr9 109247742 109247909 -33023535 - AluSc SINE Alu -17 292 124 935 241 0 9 chr9 109247937 109248153 -33023291 - AluSg/x SINE Alu -30 280 67 314 324 144 35 chr9 109248273 109248581 -33022863 + L2 LINE L2 2679 3010 -262 2105 127 3 7 chr9 109248634 109248942 -33022502 + AluSx SINE Alu 1 307 -5 29 28 0 0 chr9 109248959 109248995 -33022449 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 109249076 109249098 -33022346 + AT_rich Low_complexity Low_complexity 1 22 0 771 258 37 54 chr9 109249171 109249520 -33021924 - Charlie7 DNA MER1_type -2078 534 192 256 221 58 47 chr9 109249913 109249999 -33021445 + L2 LINE L2 3016 3102 -211 2339 149 23 28 chr9 109250045 109250480 -33020964 + Tigger2a DNA MER2_type 1 433 -1 25 65 0 0 chr9 109250481 109250527 -33020917 + AT_rich Low_complexity Low_complexity 1 46 0 2111 128 0 7 chr9 109250997 109251293 -33020151 + AluSx SINE Alu 4 297 -15 863 233 0 0 chr9 109251305 109251477 -33019967 + FAM SINE Alu 4 175 0 368 259 67 83 chr9 109251615 109251808 -33019636 + MIR SINE MIR 31 220 -42 377 284 138 70 chr9 109251885 109252241 -33019203 - L2 LINE L2 -8 3305 2926 372 94 0 0 chr9 109252268 109252321 -33019123 + (TG)n Simple_repeat Simple_repeat 2 54 0 2236 145 45 5 chr9 109252363 109252763 -33018681 + MSTA LTR MaLR 1 416 -12 418 285 84 5 chr9 109252955 109253094 -33018350 - MIR SINE MIR -62 146 17 393 75 0 0 chr9 109254218 109254271 -33017173 + (TG)n Simple_repeat Simple_repeat 1 53 0 198 0 0 0 chr9 109254487 109254509 -33016935 + (TTA)n Simple_repeat Simple_repeat 2 23 0 377 300 15 31 chr9 109254628 109254758 -33016686 + L2 LINE L2 2932 3059 -213 565 225 95 30 chr9 109254840 109255040 -33016404 + MIR SINE MIR 6 218 -44 5141 128 25 7 chr9 109255146 109256061 -33015383 - L1PB3 LINE L1 -1 6153 5223 456 275 72 12 chr9 109256330 109256497 -33014947 - MER5B DNA MER1_type -1 177 1 1822 144 160 21 chr9 109256546 109256922 -33014522 + MSTA LTR MaLR 1 428 0 2584 133 25 1 chr9 109256924 109257372 -33014072 + MSTA-int LTR MaLR 3 519 -1162 187 274 74 74 chr9 109257743 109257838 -33013606 - L3 LINE CR1 -473 1104 1010 441 0 0 0 chr9 109258352 109258401 -33013043 + (TTA)n Simple_repeat Simple_repeat 3 51 0 17408 98 16 5 chr9 109258401 109261741 -33009703 - L1PA7 LINE L1 -18 6136 2767 338 311 48 48 chr9 109261865 109262011 -33009433 + MIR SINE MIR 16 160 -63 312 266 220 28 chr9 109262085 109262194 -33009250 + MIR SINE MIR 23 152 -110 910 236 86 18 chr9 109262235 109262468 -33008976 - MER46C DNA MER2_type -39 299 42 2378 91 0 0 chr9 109262468 109262766 -33008678 - AluSc SINE Alu 0 309 12 910 236 86 18 chr9 109262766 109262812 -33008632 - MER46C DNA MER2_type -296 42 1 365 300 0 0 chr9 109262812 109262922 -33008522 + MIR SINE MIR 153 262 0 246 62 0 0 chr9 109263138 109263170 -33008274 + (GA)n Simple_repeat Simple_repeat 2 33 0 1429 103 5 0 chr9 109263416 109263639 -33007805 + AluSp SINE Alu 105 313 0 440 327 82 26 chr9 109263657 109264009 -33007435 + L1ME4a LINE L1 1290 1546 -4870 283 239 34 17 chr9 109264044 109264161 -33007283 + L1ME4a LINE L1 1687 1805 -4621 7651 23 24 0 chr9 109264211 109265301 -33006143 - L1PA4 LINE L1 -5 6150 5055 1327 13 0 0 chr9 109265301 109265460 -33005984 + L1PA4 LINE L1 4914 5072 -1074 1757 272 56 15 chr9 109265535 109266301 -33005143 + L1ME3 LINE L1 5369 6168 -2 366 237 90 14 chr9 109266296 109266441 -33005003 + L1ME4a LINE L1 1739 1992 -4576 * 2025 284 57 36 chr9 109266562 109267291 -33004153 + L1ME4a LINE L1 2235 2947 -3479 2476 76 0 13 chr9 109267291 109267606 -33003838 - AluY SINE Alu 0 311 1 2025 284 57 36 chr9 109267606 109268854 -33002590 + L1ME4a LINE L1 2947 4235 -2191 568 308 96 11 chr9 109268893 109269413 -33002031 + L1ME4a LINE L1 4899 5462 -964 5050 185 24 34 chr9 109269532 109270787 -33000657 + L1 LINE L1 3589 4830 -1316 995 260 48 71 chr9 109270762 109271432 -33000012 + L1ME4a LINE L1 5295 5949 -221 * 1990 117 36 29 chr9 109271432 109271739 -32999705 + AluSx SINE Alu 1 309 -3 249 239 0 0 chr9 109271897 109271968 -32999476 + L1ME4a LINE L1 6259 6329 -72 1260 204 6 48 chr9 109272332 109272489 -32998955 + L1MB5 LINE L1 5874 6013 -161 1936 154 0 85 chr9 109272489 109272911 -32998533 + MLT1B LTR MaLR 1 386 -4 1260 204 6 48 chr9 109272911 109273066 -32998378 + L1MB5 LINE L1 6013 6173 -1 352 277 9 9 chr9 109273094 109273206 -32998238 + HAL1 LINE L1 378 489 -2018 1373 208 12 55 chr9 109273214 109273618 -32997826 - MER63B DNA MER1_type -49 387 1 471 299 101 5 chr9 109274348 109274565 -32996879 - MIR SINE MIR -23 239 2 263 328 15 0 chr9 109274706 109274837 -32996607 + (CAGAGA)n Simple_repeat Simple_repeat 4 136 0 244 311 42 50 chr9 109274844 109274963 -32996481 + L2 LINE L2 3196 3313 0 225 298 75 0 chr9 109275403 109275497 -32995947 + L2 LINE L2 2979 3079 -193 209 163 47 0 chr9 109275969 109276012 -32995432 + A-rich Low_complexity Low_complexity 4 48 0 2100 137 7 0 chr9 109276018 109276324 -32995120 + AluSx SINE Alu 1 308 -4 230 211 53 18 chr9 109276867 109276924 -32994520 - MIR SINE MIR -77 185 127 2111 123 17 0 chr9 109278395 109278688 -32992756 + AluSg SINE Alu 3 300 -10 196 322 185 20 chr9 109279077 109279223 -32992221 - MIR SINE MIR -61 201 32 285 379 91 33 chr9 109279478 109279876 -32991568 - L2 LINE L2 -4 3268 2848 223 327 30 10 chr9 109280346 109280447 -32990997 + L3 LINE CR1 1474 1576 -1 320 347 72 42 chr9 109280506 109280768 -32990676 + L2 LINE L2 2634 2903 -411 568 242 13 34 chr9 109281654 109281803 -32989641 - L2 LINE L2 -6 3307 3162 950 320 103 49 chr9 109281855 109282785 -32988659 - L2 LINE L2 -348 2966 1896 180 266 141 0 chr9 109282990 109283054 -32988390 + L2 LINE L2 3241 3313 0 813 21 0 0 chr9 109283213 109283310 -32988134 - L1P2 LINE L1 -421 5734 5638 1102 40 26 46 chr9 109283311 109283463 -32987981 + L1PA5 LINE L1 5993 6141 -13 263 346 93 31 chr9 109283877 109284254 -32987190 + L2 LINE L2 2644 3052 -220 461 286 161 5 chr9 109284362 109284586 -32986858 - MIR SINE MIR 0 262 4 22 0 0 0 chr9 109284763 109284785 -32986659 + AT_rich Low_complexity Low_complexity 1 22 0 666 330 62 16 chr9 109284844 109285153 -32986291 + L3 LINE CR1 1254 1576 -1 343 300 45 9 chr9 109286043 109286153 -32985291 + L2 LINE L2 3158 3271 -1 235 132 57 0 chr9 109286409 109286462 -32984982 + CT-rich Low_complexity Low_complexity 3 58 0 410 269 161 9 chr9 109286528 109286852 -32984592 - L1ME4a LINE L1 -44 6077 5705 284 276 37 60 chr9 109286869 109287003 -32984441 - L1ME4a LINE L1 -473 5648 5518 234 279 23 12 chr9 109287190 109287276 -32984168 + L1ME LINE L1 5512 5598 -523 247 197 0 16 chr9 109287387 109287448 -32983996 + L1ME LINE L1 5742 5801 -320 2193 61 3 55 chr9 109288277 109288589 -32982855 + AluY SINE Alu 4 299 -12 2023 95 0 0 chr9 109288853 109289116 -32982328 + AluY SINE Alu 46 308 -3 1943 131 0 3 chr9 109289683 109290007 -32981437 - AluSq SINE Alu 0 323 1 450 246 24 40 chr9 109290027 109290153 -32981291 + MIR SINE MIR 129 252 -10 790 181 39 6 chr9 109290456 109290638 -32980806 - MER53 DNA DNA -1 188 1 210 211 39 0 chr9 109291385 109291437 -32980007 + GA-rich Low_complexity Low_complexity 2 55 0 693 219 14 87 chr9 109291476 109291695 -32979749 - MIR SINE MIR -53 209 7 632 274 21 84 chr9 109291826 109292300 -32979144 + HAL1b LINE L1 346 789 -559 317 307 30 143 chr9 109292498 109292996 -32978448 + L2 LINE L2 2827 3268 -4 2166 111 7 3 chr9 109293248 109293555 -32977889 + AluSx SINE Alu 1 308 -4 1308 141 9 0 chr9 109293808 109294035 -32977409 + Tigger2 DNA MER2_type 1 229 -2489 2680 118 26 19 chr9 109294040 109294463 -32976981 + Tigger2 DNA MER2_type 388 813 -1905 3276 126 15 0 chr9 109294566 109295084 -32976360 + Tigger2 DNA MER2_type 1263 1788 -930 * 4059 133 33 11 chr9 109295082 109295781 -32975663 + Tigger2 DNA MER2_type 2001 2714 -4 214 119 17 51 chr9 109296698 109296707 -32974737 + (TAA)n Simple_repeat Simple_repeat 2 10 -48 1567 99 5 5 chr9 109296707 109296919 -32974525 + AluSg/x SINE Alu 85 296 -14 214 119 17 51 chr9 109296919 109296968 -32974476 + (TAA)n Simple_repeat Simple_repeat 10 58 0 676 286 80 33 chr9 109297968 109298295 -32973149 + MLT1I LTR MaLR 1 348 -61 1483 249 135 21 chr9 109298295 109298829 -32972615 + MLT1G1 LTR MaLR 1 595 0 676 286 80 33 chr9 109298829 109298865 -32972579 + MLT1I LTR MaLR 348 381 -28 274 239 28 0 chr9 109298884 109298955 -32972489 - MIR SINE MIR -111 151 79 226 402 9 19 chr9 109299106 109299213 -32972231 + L2 LINE L2 3153 3258 -14 2249 113 0 3 chr9 109299365 109299674 -32971770 - AluSg SINE Alu -2 308 1 252 207 107 67 chr9 109300358 109300508 -32970936 - L1ME4a LINE L1 -31 6090 5935 842 234 47 27 chr9 109300548 109300847 -32970597 - L1ME3A LINE L1 -12 6158 5854 3697 98 15 2 chr9 109300949 109301543 -32969901 - L1P LINE L1 -743 5403 4802 253 86 0 0 chr9 109301545 109301580 -32969864 + U2 snRNA snRNA 13 47 -141 361 256 146 7 chr9 109301781 109301918 -32969526 + L2 LINE L2 3158 3313 0 481 313 104 28 chr9 109301921 109302314 -32969130 - L1M4 LINE L1 -1028 5118 4696 4403 191 54 43 chr9 109302332 109303130 -32968314 + L1MDa LINE L1 752 1569 -4971 2322 105 0 0 chr9 109303130 109303435 -32968009 + AluSx SINE Alu 1 305 -7 4403 191 54 43 chr9 109303435 109303837 -32967607 + L1MDa LINE L1 1569 1965 -4575 26 30 0 0 chr9 109303840 109303873 -32967571 + AT_rich Low_complexity Low_complexity 1 33 0 254 261 278 0 chr9 109304158 109304273 -32967171 - MER117 DNA MER1_type -50 147 1 183 189 0 0 chr9 109304281 109304318 -32967126 - L2 LINE L2 -108 3205 3169 857 245 66 63 chr9 109304535 109304898 -32966546 - MLT1A1 LTR MaLR 0 365 2 1413 134 40 13 chr9 109305127 109305351 -32966093 + MER30 DNA MER1_type 1 230 0 1959 239 25 6 chr9 109305420 109305893 -32965551 + L1ME1 LINE L1 5681 6162 -4 5179 79 3 6 chr9 109305904 109306611 -32964833 - L1PA7 LINE L1 -3 6151 5447 3493 74 15 15 chr9 109306611 109307182 -32964262 + L1PA7 LINE L1 4860 5431 -741 203 146 24 0 chr9 109307311 109307352 -32964092 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr9 109307583 109307605 -32963839 + AT_rich Low_complexity Low_complexity 1 22 0 5835 241 55 22 chr9 109307708 109310111 -32961333 + L1MDa LINE L1 2264 4751 -1789 1403 222 10 52 chr9 109310411 109310816 -32960628 - MLT2C1 LTR ERVL 0 397 10 246 394 14 14 chr9 109311225 109311367 -32960077 - L2 LINE L2 -461 2853 2712 13034 176 32 30 chr9 109311921 109312694 -32958750 + L1PB3 LINE L1 2800 3570 -3286 2243 124 7 0 chr9 109312694 109312992 -32958452 + AluSx SINE Alu 1 300 -12 13034 176 32 30 chr9 109312992 109313606 -32957838 + L1PB3 LINE L1 3570 4182 -2674 288 0 0 0 chr9 109313606 109313638 -32957806 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 13034 176 32 30 chr9 109313638 109315926 -32955518 + L1PB3 LINE L1 4182 6465 -391 180 0 0 0 chr9 109315926 109315946 -32955498 + (CA)n Simple_repeat Simple_repeat 2 21 0 13034 176 32 30 chr9 109315946 109315984 -32955460 + L1PB3 LINE L1 6465 6501 -355 2245 101 44 0 chr9 109315984 109316280 -32955164 + AluSc SINE Alu 1 309 0 13034 176 32 30 chr9 109316280 109316615 -32954829 + L1PB3 LINE L1 6501 6855 -1 203 200 100 0 chr9 109316621 109316671 -32954773 + MIR SINE MIR 136 190 -72 667 279 121 62 chr9 109316782 109317237 -32954207 + MLT1J LTR MaLR 22 503 -8 285 319 133 43 chr9 109317323 109317511 -32953933 + MIR3 SINE MIR 3 207 -1 222 118 0 0 chr9 109317822 109317856 -32953588 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr9 109318062 109318084 -32953360 + AT_rich Low_complexity Low_complexity 1 22 0 402 286 6 36 chr9 109318339 109318507 -32952937 - MER117 DNA MER1_type -34 163 1 2185 118 10 0 chr9 109318738 109319034 -32952410 + AluSq SINE Alu 1 299 -14 398 313 60 7 chr9 109319278 109319428 -32952016 + MIR SINE MIR 27 184 -78 238 291 57 97 chr9 109320113 109320288 -32951156 + L2 LINE L2 2583 2750 -564 331 280 108 6 chr9 109320472 109320629 -32950815 - MLT1L LTR MaLR -236 379 207 1808 96 0 55 chr9 109320728 109320999 -32950445 + AluSx SINE Alu 29 284 -28 1948 134 28 0 chr9 109321461 109321751 -32949693 - AluSx SINE Alu -14 298 1 242 289 164 10 chr9 109322367 109322471 -32948973 + MIR SINE MIR 30 149 -113 4441 167 101 8 chr9 109323101 109323950 -32947494 - LTR28 LTR ERV1 0 1020 93 13217 114 15 9 chr9 109324050 109326907 -32944537 + L1PA8A LINE L1 3232 6127 -4 298 132 38 0 chr9 109326907 109326960 -32944484 - Charlie7 DNA MER1_type -1970 642 588 573 282 82 0 chr9 109327278 109327473 -32943971 + MIR SINE MIR 41 251 -11 180 395 45 51 chr9 109327539 109327853 -32943591 + L2 LINE L2 2664 2975 -339 1754 24 0 5 chr9 109328335 109328543 -32942901 - L1PA3 LINE L1 0 6155 5949 5682 11 18 0 chr9 109328543 109329484 -32941960 + L1PA3 LINE L1 5001 5954 -201 601 298 89 13 chr9 109329583 109329808 -32941636 + MIR SINE MIR 14 255 -7 3566 149 48 30 chr9 109329844 109330060 -32941384 + L1MB3 LINE L1 5435 5646 -537 2169 137 0 16 chr9 109330060 109330374 -32941070 + AluSx SINE Alu 3 311 -1 3566 149 48 30 chr9 109330374 109330890 -32940554 + L1MB3 LINE L1 5646 6180 -3 300 154 0 0 chr9 109331098 109331150 -32940294 + (CA)n Simple_repeat Simple_repeat 1 52 0 303 215 89 0 chr9 109332204 109332283 -32939161 - MIR SINE MIR -64 198 113 300 323 40 20 chr9 109332408 109332507 -32938937 - MIR SINE MIR -140 122 22 1662 289 64 39 chr9 109333393 109334329 -32937115 + L1MEd LINE L1 4 963 -5156 631 308 92 0 chr9 109334490 109334717 -32936727 - MIR SINE MIR -2 260 13 282 325 51 15 chr9 109335697 109335854 -32935590 - MIR SINE MIR -63 145 26 446 326 165 28 chr9 109335899 109336298 -32935146 + L3 LINE CR1 766 1219 -358 677 221 5 106 chr9 109336382 109336599 -32934845 + MIR SINE MIR 6 200 -62 367 209 0 77 chr9 109336894 109336985 -32934459 + MIR SINE MIR 60 143 -65 2461 125 8 0 chr9 109337146 109337507 -32933937 - THE1B LTR MaLR 0 364 1 243 88 0 0 chr9 109337814 109337848 -32933596 + (TG)n Simple_repeat Simple_repeat 2 35 0 239 299 26 113 chr9 109339630 109339861 -32931583 - L2 LINE L2 -109 3163 2953 180 324 44 0 chr9 109339962 109340030 -32931414 + L2 LINE L2 2995 3065 -248 1103 280 31 33 chr9 109340295 109340720 -32930724 + LTR16A LTR ERVL 21 444 -6 369 281 177 27 chr9 109340949 109341244 -32930200 + L1ME4a LINE L1 5535 5887 -234 2327 85 0 16 chr9 109341635 109341963 -32929481 - AluSc SINE Alu 0 309 1 515 329 65 17 chr9 109342257 109342488 -32928956 - MIR SINE MIR -12 250 9 371 273 164 11 chr9 109343440 109343623 -32927821 + MIR SINE MIR 20 230 -32 734 296 49 16 chr9 109344544 109344791 -32926653 - MIR SINE MIR -1 261 7 186 198 0 62 chr9 109344824 109344905 -32926539 + GA-rich Low_complexity Low_complexity 3 78 0 430 331 40 4 chr9 109345391 109345663 -32925781 + L1ME4a LINE L1 5553 5834 -287 1463 228 60 81 chr9 109346407 109346957 -32924487 - MLT1F1 LTR MaLR 0 624 2 185 352 99 0 chr9 109347269 109347340 -32924104 - MIR SINE MIR -165 97 20 192 329 53 13 chr9 109347723 109347799 -32923645 + L2 LINE L2 3232 3310 -3 257 254 116 0 chr9 109347840 109347978 -32923466 + MER113 DNA MER1_type? 17 170 -351 203 320 54 27 chr9 109348336 109348483 -32922961 - L2 LINE L2 0 3313 3163 294 341 132 17 chr9 109348619 109348906 -32922538 - L2 LINE L2 -342 2972 2653 677 291 81 80 chr9 109349420 109349985 -32921459 + L2 LINE L2 2733 3310 -3 318 281 111 37 chr9 109349985 109350120 -32921324 + L2 LINE L2 3127 3271 -1 417 174 14 0 chr9 109350163 109350232 -32921212 - MER94 DNA DNA -60 74 5 200 35 35 0 chr9 109350534 109350563 -32920881 + (CA)n Simple_repeat Simple_repeat 1 30 0 1381 88 0 0 chr9 109350578 109350749 -32920695 + AluSq SINE Alu 1 171 -142 1885 85 49 0 chr9 109350849 109351096 -32920348 - AluY SINE Alu -51 260 2 709 182 0 0 chr9 109351097 109351218 -32920226 - MLT1A1 LTR MaLR -210 155 35 1413 105 13 2 chr9 109351218 109351471 -32919973 - AluSq SINE Alu 0 306 1 300 136 0 0 chr9 109351471 109351514 -32919930 - MLT1A1 LTR MaLR -331 43 1 273 29 0 0 chr9 109352017 109352051 -32919393 + (CA)n Simple_repeat Simple_repeat 1 34 0 585 228 46 213 chr9 109352207 109352818 -32918626 - L2 LINE L2 0 3313 2805 558 0 0 0 chr9 109353997 109354059 -32917385 + (TG)n Simple_repeat Simple_repeat 2 63 0 252 330 49 67 chr9 109354079 109354303 -32917141 + L3b LINE CR1 1361 1580 -3 241 289 0 36 chr9 109354413 109354496 -32916948 - MIR SINE MIR -87 121 42 366 23 0 0 chr9 109355086 109355129 -32916315 + (CA)n Simple_repeat Simple_repeat 2 44 0 270 318 20 0 chr9 109355198 109355349 -32916095 + (TA)n Simple_repeat Simple_repeat 2 155 0 259 111 0 0 chr9 109355349 109355394 -32916050 + LTR66 LTR ERVL 394 438 -172 1285 229 98 103 chr9 109355527 109355567 -32915877 - MLT2B1 LTR ERVL 0 520 481 312 27 0 0 chr9 109355567 109355604 -32915840 + (TG)n Simple_repeat Simple_repeat 1 37 0 1285 229 98 103 chr9 109355604 109355870 -32915574 - MLT2B1 LTR ERVL -39 481 216 2561 61 0 6 chr9 109355870 109356183 -32915261 - AluY SINE Alu 0 311 1 1285 229 98 103 chr9 109356183 109356398 -32915046 - MLT2B1 LTR ERVL -304 216 1 180 309 155 0 chr9 109356715 109356812 -32914632 - L3 LINE CR1 -993 584 473 405 329 181 0 chr9 109356901 109357111 -32914333 - L3 LINE CR1 -1135 442 195 299 373 0 0 chr9 109359257 109359367 -32912077 + MIR3 SINE MIR 95 204 -4 31117 47 3 0 chr9 109359558 109363753 -32907691 + L1P2 LINE L1 1561 5766 -388 664 339 81 51 chr9 109363985 109364459 -32906985 + L2 LINE L2 1929 2387 -885 2144 119 10 10 chr9 109364459 109364762 -32906682 - AluSq SINE Alu -10 303 1 664 339 81 51 chr9 109364762 109365373 -32906071 + L2 LINE L2 2387 3043 -229 213 268 0 0 chr9 109365674 109365715 -32905729 + MER91 DNA MER1_type 1 41 -149 474 324 93 6 chr9 109365999 109366181 -32905263 + MIR SINE MIR 30 227 -35 778 247 72 58 chr9 109367235 109367527 -32903917 + MLT1I LTR MaLR 114 409 0 304 338 226 24 chr9 109368173 109368549 -32902895 - L3 LINE CR1 -45 1532 1081 278 346 64 38 chr9 109370355 109370728 -32900716 - L2 LINE L2 -339 2975 2593 441 316 8 8 chr9 109372315 109372448 -32898996 - MIR3 SINE MIR -62 146 14 3457 81 0 59 chr9 109372608 109372668 -32898776 - MLT2A1 LTR ERVL 0 444 382 207 0 0 0 chr9 109372668 109372691 -32898753 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 219 88 0 0 chr9 109372690 109372724 -32898720 + (TA)n Simple_repeat Simple_repeat 1 34 0 3457 81 0 59 chr9 109372691 109373135 -32898309 - MLT2A1 LTR ERVL -62 382 1 212 237 0 51 chr9 109373220 109373279 -32898165 - L2 LINE L2 -1 3271 3216 484 303 7 7 chr9 109373895 109374040 -32897404 + MIR SINE MIR 17 161 -101 280 328 70 8 chr9 109374128 109374256 -32897188 + L2 LINE L2 3137 3272 0 1087 186 34 5 chr9 109375693 109375897 -32895547 + MER20 DNA MER1_type 4 213 -6 258 32 0 0 chr9 109376051 109376082 -32895362 + (T)n Simple_repeat Simple_repeat 1 31 0 1967 205 0 16 chr9 109376626 109376996 -32894448 - MLT1A1 LTR MaLR 0 365 2 189 0 0 0 chr9 109377417 109377438 -32894006 + (T)n Simple_repeat Simple_repeat 1 21 0 241 261 31 0 chr9 109377613 109377678 -32893766 - MIR SINE MIR -2 260 194 226 268 24 12 chr9 109377679 109377761 -32893683 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 280 318 216 7 chr9 109377797 109377945 -32893499 - MIR SINE MIR -58 204 26 240 324 120 9 chr9 109377958 109378066 -32893378 - L2 LINE L2 -17 3255 3136 296 363 68 20 chr9 109378253 109378501 -32892943 - L2 LINE L2 -454 2860 2601 360 214 27 45 chr9 109378783 109378895 -32892549 - MIR SINE MIR -113 149 40 301 288 60 7 chr9 109378904 109379055 -32892389 + MIR SINE MIR 23 184 -63 611 286 35 90 chr9 109380116 109380483 -32890961 - L2 LINE L2 0 3272 2926 224 324 219 38 chr9 109380557 109380844 -32890600 - L2 LINE L2 -485 2829 2491 481 279 29 35 chr9 109380996 109381168 -32890276 + MIR3 SINE MIR 30 200 -8 332 328 25 21 chr9 109381856 109382014 -32889430 - MIR SINE MIR -58 150 20 493 241 88 84 chr9 109382166 109382256 -32889188 - L1ME LINE L1 -340 5781 5693 932 268 28 8 chr9 109382256 109382510 -32888934 + MIR SINE MIR 4 262 0 493 241 88 84 chr9 109382510 109382668 -32888776 - L1ME LINE L1 -428 5693 5532 387 274 51 8 chr9 109383163 109383280 -32888164 + MIR3 SINE MIR 53 174 -34 879 179 44 105 chr9 109383310 109383539 -32887905 - MER20 DNA MER1_type 0 219 5 2141 132 0 0 chr9 109384991 109385286 -32886158 - AluSx SINE Alu -17 295 1 30 27 0 0 chr9 109385308 109385345 -32886099 + AT_rich Low_complexity Low_complexity 1 37 0 1013 209 68 0 chr9 109386409 109386629 -32884815 - MIR SINE MIR 0 262 28 188 314 171 0 chr9 109386959 109387064 -32884380 - MIR SINE MIR 0 262 140 509 205 26 0 chr9 109387070 109387187 -32884257 + L1M4 LINE L1 4303 4422 -1724 538 209 0 0 chr9 109387190 109387305 -32884139 + L1M4 LINE L1 5099 5213 -933 300 269 62 41 chr9 109387544 109387689 -32883755 + MIR3 SINE MIR 59 206 -2 2423 84 0 3 chr9 109387695 109388005 -32883439 + AluSx SINE Alu 1 309 -3 2441 70 0 10 chr9 109388224 109388538 -32882906 - AluY SINE Alu 0 311 1 3376 108 4 0 chr9 109388630 109389091 -32882353 - L1PA13 LINE L1 -2 6161 5699 3533 302 110 34 chr9 109389133 109391062 -32880382 - L2 LINE L2 -337 2977 903 385 222 71 24 chr9 109391067 109391193 -32880251 + MIR SINE MIR 66 197 -65 512 286 86 45 chr9 109392812 109393057 -32878387 + MIR SINE MIR 5 259 -3 236 215 93 159 chr9 109393160 109393374 -32878070 - MIR SINE MIR -6 256 57 745 260 69 17 chr9 109395242 109395473 -32875971 - MIR SINE MIR 0 262 20 198 309 0 0 chr9 109397768 109397823 -32873621 + MIR SINE MIR 47 101 -161 470 328 94 6 chr9 109398307 109398536 -32872908 - MIR SINE MIR -6 256 7 5672 111 5 0 chr9 109398585 109399394 -32872050 + L1P LINE L1 1 813 -5333 4560 52 9 7 chr9 109399516 109400072 -32871372 + L1PA5 LINE L1 5597 6153 -1 225 0 0 0 chr9 109400130 109400155 -32871289 + (A)n Simple_repeat Simple_repeat 1 25 0 292 352 0 0 chr9 109400157 109400262 -32871182 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 1446 289 47 22 chr9 109400914 109401408 -32870036 + MLT2F LTR ERVL 17 522 -141 765 234 136 0 chr9 109401439 109401623 -32869821 + MER58A DNA MER1_type 10 218 -6 357 169 0 0 chr9 109401629 109401694 -32869750 + MLT2F LTR ERVL 531 595 -68 318 212 0 42 chr9 109401699 109401817 -32869627 + (TATG)n Simple_repeat Simple_repeat 2 114 0 205 296 14 0 chr9 109402058 109402129 -32869315 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 209 261 0 0 chr9 109402592 109402638 -32868806 + MIR SINE MIR 88 133 -129 606 110 0 10 chr9 109402759 109402859 -32868585 + AluSg/x SINE Alu 212 310 0 204 303 45 0 chr9 109402970 109403036 -32868408 - MIR SINE MIR -5 257 189 718 292 41 14 chr9 109403247 109403473 -32867971 - MIR SINE MIR -16 246 16 277 268 189 7 chr9 109403678 109403831 -32867613 - MIR3 SINE MIR -20 188 8 351 44 0 0 chr9 109403896 109403941 -32867503 + (TG)n Simple_repeat Simple_repeat 1 45 0 441 0 0 0 chr9 109405646 109405695 -32865749 + (GA)n Simple_repeat Simple_repeat 1 49 0 437 219 0 10 chr9 109406691 109406787 -32864657 - MER81 DNA DNA 0 114 20 214 167 48 0 chr9 109406791 109406833 -32864611 + L2 LINE L2 3229 3272 0 2142 90 7 0 chr9 109406845 109407153 -32864291 + AluSx SINE Alu 1 310 0 728 277 86 15 chr9 109407554 109407921 -32863523 + L2 LINE L2 2776 3169 -144 549 187 18 137 chr9 109407937 109408156 -32863288 + MER3 DNA MER1_type 10 202 -7 227 188 21 0 chr9 109408122 109408170 -32863274 - MER3 DNA MER1_type -120 89 41 * 204 292 54 0 chr9 109408177 109408270 -32863174 + L2 LINE L2 3208 3267 -5 225 290 29 14 chr9 109408906 109408975 -32862469 - L2 LINE L2 -1 3312 3243 290 325 0 0 chr9 109408988 109409071 -32862373 + MIR SINE MIR 180 262 0 223 235 59 39 chr9 109409091 109409193 -32862251 - L2 LINE L2 -105 3208 3105 965 201 34 5 chr9 109410395 109410599 -32860845 + MER20 DNA MER1_type 4 213 -6 279 0 0 0 chr9 109410754 109410785 -32860659 + (T)n Simple_repeat Simple_repeat 1 31 0 193 288 41 119 chr9 109411108 109411403 -32860041 + L2 LINE L2 2811 3082 -190 443 275 41 23 chr9 109411655 109411826 -32859618 + GA-rich Low_complexity Low_complexity 2 175 0 22 35 0 0 chr9 109413499 109413528 -32857916 + AT_rich Low_complexity Low_complexity 1 29 0 826 247 90 44 chr9 109414937 109415326 -32856118 + MLT1L LTR MaLR 169 575 -40 787 155 85 8 chr9 109415332 109415492 -32855952 - AluSc SINE Alu 0 309 140 257 310 0 35 chr9 109416080 109416167 -32855277 - L2 LINE L2 0 3313 3230 197 244 0 0 chr9 109416170 109416215 -32855229 - L2 LINE L2 -1 3271 3227 437 317 210 35 chr9 109416343 109417100 -32854344 - L2 LINE L2 -285 2987 2104 1251 217 13 23 chr9 109417115 109417188 -32854256 - Zaphod DNA AcHobo -78 3953 3881 2053 103 46 0 chr9 109417188 109417469 -32853975 + AluSx SINE Alu 1 294 -18 438 20 0 0 chr9 109417470 109417521 -32853923 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1251 217 13 23 chr9 109417521 109417909 -32853535 - Zaphod DNA AcHobo -149 3882 3426 805 263 40 0 chr9 109417945 109418169 -32853275 - Zaphod DNA AcHobo -3792 239 7 1794 195 45 8 chr9 109418355 109418755 -32852689 + L1MB8 LINE L1 5764 6178 0 193 299 15 45 chr9 109419747 109419814 -32851630 - MIR SINE MIR -102 160 96 241 268 0 18 chr9 109419920 109419976 -32851468 + L2 LINE L2 3255 3309 -4 377 377 17 13 chr9 109420455 109420691 -32850753 + MIR SINE MIR 5 241 -21 213 154 0 0 chr9 109420699 109420738 -32850706 + (TTA)n Simple_repeat Simple_repeat 2 40 0 411 21 0 0 chr9 109421170 109421218 -32850226 + (CA)n Simple_repeat Simple_repeat 2 49 0 182 154 58 115 chr9 109422238 109422267 -32849177 - L2 LINE L2 0 3313 3287 2222 187 75 88 chr9 109422267 109422929 -32848515 - MLT1E1 LTR MaLR 0 654 1 182 154 58 115 chr9 109422929 109422951 -32848493 - L2 LINE L2 -26 3287 3265 243 262 8 63 chr9 109423013 109423139 -32848305 + MIR SINE MIR 144 262 0 320 171 66 26 chr9 109423299 109423375 -32848069 - MIR SINE MIR -110 152 74 556 110 0 0 chr9 109423625 109423698 -32847746 + AluSp SINE Alu 51 123 -190 370 280 42 109 chr9 109424400 109424639 -32846805 + L3 LINE CR1 1354 1576 -1 191 225 0 0 chr9 109424651 109424691 -32846753 - L2 LINE L2 -3 3269 3230 1755 156 41 20 chr9 109424712 109425007 -32846437 + AluSx SINE Alu 1 301 -11 645 158 7 14 chr9 109425010 109425156 -32846288 + GA-rich Low_complexity Low_complexity 4 148 0 406 323 45 14 chr9 109425251 109425474 -32845970 - Charlie8 DNA MER1_type -2141 276 47 197 284 0 62 chr9 109425960 109426041 -32845403 - L2 LINE L2 -926 2388 2313 364 319 239 5 chr9 109426148 109426336 -32845108 + MIR SINE MIR 19 250 -12 197 301 78 48 chr9 109426361 109426464 -32844980 + L3b LINE CR1 1475 1580 -3 474 252 28 0 chr9 109426617 109426724 -32844720 + MER81 DNA DNA 1 110 -4 380 227 67 37 chr9 109427833 109428065 -32843379 + L1M4 LINE L1 5202 5440 -738 21 36 0 0 chr9 109428073 109428101 -32843343 + AT_rich Low_complexity Low_complexity 1 28 0 436 276 72 33 chr9 109428347 109428499 -32842945 + MIR SINE MIR 24 181 -81 551 236 158 51 chr9 109428678 109428932 -32842512 + MER102a DNA MER1_type 47 327 -3 4094 70 2 18 chr9 109429431 109429988 -32841456 + L1PA10 LINE L1 5606 6153 -15 381 43 0 0 chr9 109430101 109430148 -32841296 + (TG)n Simple_repeat Simple_repeat 1 47 0 256 307 72 33 chr9 109430395 109430548 -32840896 + MIR SINE MIR 60 218 -44 205 304 45 45 chr9 109430558 109430670 -32840774 - MIR3 SINE MIR -32 176 65 584 179 29 35 chr9 109430774 109430947 -32840497 + Charlie4 DNA MER1_type 1774 1945 -16 590 205 56 11 chr9 109431021 109431162 -32840282 + MER20 DNA MER1_type 73 219 0 2248 113 10 0 chr9 109431739 109432040 -32839404 - AluSq SINE Alu -9 304 1 246 325 12 0 chr9 109432417 109432497 -32838947 + L2 LINE L2 3233 3313 0 211 344 74 31 chr9 109432518 109432681 -32838763 - MIR SINE MIR -82 180 11 369 241 0 0 chr9 109432803 109432882 -32838562 + MER103 DNA DNA 18 96 -70 206 0 0 65 chr9 109433179 109433210 -32838234 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 237 86 0 0 chr9 109433769 109433804 -32837640 - tRNA-Arg-AGA tRNA tRNA -40 36 2 800 276 105 0 chr9 109434045 109434273 -32837171 + MIR SINE MIR 3 254 -8 2231 118 0 0 chr9 109434280 109434576 -32836868 + AluSg SINE Alu 2 297 -13 287 356 35 0 chr9 109434591 109434706 -32836738 + MIR SINE MIR 74 192 -70 551 283 91 66 chr9 109434979 109435530 -32835914 + L2 LINE L2 2488 3060 -253 359 180 146 11 chr9 109435547 109435636 -32835808 + MIR SINE MIR 153 253 -9 311 267 42 42 chr9 109435759 109435879 -32835565 + L2 LINE L2 3153 3272 0 282 73 0 0 chr9 109436321 109436362 -32835082 + (CAA)n Simple_repeat Simple_repeat 2 42 0 231 125 0 0 chr9 109436889 109436929 -32834515 + (A)n Simple_repeat Simple_repeat 1 40 0 235 239 141 54 chr9 109437414 109437506 -32833938 - MIR SINE MIR -117 145 46 325 263 53 11 chr9 109438130 109438225 -32833219 + MIR SINE MIR 114 212 -50 241 296 37 0 chr9 109438639 109438720 -32832724 - L2 LINE L2 0 3313 3230 227 326 31 62 chr9 109439196 109439325 -32832119 + L2 LINE L2 3143 3267 -5 501 289 86 13 chr9 109439558 109439710 -32831734 + MIR3 SINE MIR 20 182 -26 2747 97 11 0 chr9 109440737 109441108 -32830336 + THE1C LTR MaLR 1 375 0 1006 97 0 0 chr9 109441689 109441833 -32829611 + L1MA2 LINE L1 6161 6304 0 21 0 0 0 chr9 109441833 109441854 -32829590 + AT_rich Low_complexity Low_complexity 1 21 0 318 280 76 42 chr9 109442234 109442352 -32829092 - MIR SINE MIR -55 153 32 3941 31 6 19 chr9 109443440 109443923 -32827521 - L1PA5 LINE L1 -11 6143 5667 2139 128 7 3 chr9 109444924 109445222 -32826222 - AluSq SINE Alu -14 299 1 26 0 0 0 chr9 109445490 109445516 -32825928 + AT_rich Low_complexity Low_complexity 1 26 0 400 347 97 17 chr9 109445740 109446028 -32825416 - L3b LINE CR1 -13 1570 1260 295 297 99 3 chr9 109447756 109447942 -32823502 - MIR SINE MIR -10 252 4 329 291 96 29 chr9 109447954 109448693 -32822751 + L1ME4a LINE L1 5193 6049 -72 348 260 13 13 chr9 109449818 109449895 -32821549 - MIR SINE MIR -99 109 33 396 247 65 102 chr9 109451068 109451343 -32820101 + L1ME4a LINE L1 5767 6031 -90 329 314 63 102 chr9 109451598 109451932 -32819512 + L2 LINE L2 2945 3265 -7 433 340 26 0 chr9 109452479 109452635 -32818809 - MIR SINE MIR -54 208 49 259 283 88 71 chr9 109452863 109452976 -32818468 - L2 LINE L2 0 3272 3158 955 237 69 8 chr9 109453065 109453310 -32818134 - MIR SINE MIR -2 260 1 603 289 94 8 chr9 109453966 109454326 -32817118 - L1ME LINE L1 -343 5778 5388 22 0 0 0 chr9 109454466 109454488 -32816956 + AT_rich Low_complexity Low_complexity 1 22 0 1235 223 61 114 chr9 109454704 109455031 -32816413 - L1ME1 LINE L1 -2 6164 5841 299 43 0 22 chr9 109455031 109455077 -32816367 - MADE1 DNA Mariner -34 46 2 1235 223 61 114 chr9 109455077 109455362 -32816082 - L1ME4a LINE L1 -325 5841 5542 252 292 79 32 chr9 109455362 109455578 -32815866 + L1ME4a LINE L1 5838 6063 -58 678 269 76 44 chr9 109456634 109456883 -32814561 + MIR SINE MIR 6 262 0 854 311 180 24 chr9 109457231 109457780 -32813664 - L3 LINE CR1 -13 1564 930 653 236 75 121 chr9 109457819 109457859 -32813585 - MLT2B1 LTR ERVL 0 520 480 321 26 0 0 chr9 109457859 109457897 -32813547 + (TG)n Simple_repeat Simple_repeat 2 39 0 653 236 75 121 chr9 109457897 109458162 -32813282 - MLT2B1 LTR ERVL -40 480 234 2384 89 0 6 chr9 109458162 109458475 -32812969 - AluY SINE Alu 0 311 1 653 236 75 121 chr9 109458475 109458557 -32812887 - MLT2B1 LTR ERVL -286 234 150 203 156 0 0 chr9 109459275 109459307 -32812137 + T-rich Low_complexity Low_complexity 3 34 0 374 352 28 7 chr9 109459801 109459946 -32811498 + L2 LINE L2 2608 2755 -559 474 164 0 0 chr9 109459955 109460028 -32811416 + MER58A DNA MER1_type 4 76 -31 2096 203 19 68 chr9 109460028 109460663 -32810781 - L1MC4 LINE L1 -925 7117 6514 24 32 0 0 chr9 109461183 109461214 -32810230 + AT_rich Low_complexity Low_complexity 1 31 0 197 330 97 19 chr9 109461672 109461775 -32809669 - MIR3 SINE MIR -6 202 92 331 305 137 0 chr9 109461993 109462088 -32809356 + MIR3 SINE MIR 52 159 -49 841 182 6 33 chr9 109462161 109462342 -32809102 + MIR SINE MIR 87 262 0 569 316 92 33 chr9 109462374 109462709 -32808735 + L2 LINE L2 2916 3270 -2 295 300 1 84 chr9 109462885 109463043 -32808401 - MER5A DNA MER1_type -25 164 7 280 357 18 0 chr9 109463244 109463362 -32808082 + MIR SINE MIR 33 154 -65 234 220 0 0 chr9 109463654 109463704 -32807740 - MLT1K LTR MaLR -2 586 537 241 188 47 31 chr9 109463948 109464012 -32807432 - MLT1K LTR MaLR -355 233 169 283 299 103 31 chr9 109464187 109464284 -32807160 + MIR SINE MIR 27 130 -78 633 170 50 22 chr9 109464643 109464825 -32806619 + MER53 DNA DNA 1 187 -2 227 373 0 29 chr9 109464962 109465064 -32806380 + MIR3 SINE MIR 109 207 -1 21 0 0 0 chr9 109465623 109465644 -32805800 + AT_rich Low_complexity Low_complexity 1 21 0 355 405 50 50 chr9 109465873 109466174 -32805270 + L2 LINE L2 2963 3263 -9 238 264 0 0 chr9 109466174 109466227 -32805217 + GA-rich Low_complexity Low_complexity 1 53 0 1785 214 78 40 chr9 109466233 109466268 -32805176 - MLT2B1 LTR ERVL 0 520 488 477 0 0 0 chr9 109466268 109466321 -32805123 + (TG)n Simple_repeat Simple_repeat 2 54 0 1785 214 78 40 chr9 109466321 109466786 -32804658 - MLT2B1 LTR ERVL -32 488 1 383 304 32 32 chr9 109467160 109467377 -32804067 + L2 LINE L2 2490 2706 -608 798 223 1 8 chr9 109467434 109467607 -32803837 - MLT1B LTR MaLR -210 164 1 333 0 0 0 chr9 109468161 109468198 -32803246 + (CA)n Simple_repeat Simple_repeat 2 38 0 570 365 26 60 chr9 109468220 109468873 -32802571 - L2 LINE L2 -556 2758 2128 367 335 130 5 chr9 109469802 109470002 -32801442 + L1ME4a LINE L1 5611 5835 -286 225 289 100 22 chr9 109471587 109471677 -32799767 + MIR SINE MIR 65 161 -101 228 111 0 0 chr9 109472006 109472042 -32799402 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 579 292 121 58 chr9 109472047 109472462 -32798982 - L2 LINE L2 -18 3295 2853 572 233 57 6 chr9 109472973 109473132 -32798312 + MIR SINE MIR 3 169 -93 2128 92 92 0 chr9 109473232 109473515 -32797929 - AluSq SINE Alu -4 309 1 574 348 98 30 chr9 109475148 109475679 -32795765 + L2 LINE L2 2327 2893 -421 217 343 88 0 chr9 109475833 109475935 -32795509 + L2 LINE L2 3142 3252 -20 183 200 0 0 chr9 109476167 109476197 -32795247 - MIR SINE MIR -61 147 118 447 286 117 35 chr9 109476431 109476602 -32794842 - MIR SINE MIR -60 202 18 986 107 0 179 chr9 109476602 109476836 -32794608 + 7SK RNA RNA 2 193 0 2156 117 7 10 chr9 109477084 109477382 -32794062 - AluSq SINE Alu -16 297 1 684 222 64 0 chr9 109477452 109477623 -32793821 + MER3 DNA MER1_type 1 182 -27 399 183 86 86 chr9 109477642 109477839 -32793605 - L2 LINE L2 -5 3308 3112 269 313 12 0 chr9 109479120 109479203 -32792241 + L2 LINE L2 3227 3310 -3 3947 108 67 0 chr9 109479267 109479862 -32791582 + MER41B LTR ERV1 1 635 0 726 286 41 14 chr9 109479885 109480105 -32791339 - MIR SINE MIR -26 236 11 299 85 21 0 chr9 109482151 109482198 -32789246 + (CA)n Simple_repeat Simple_repeat 1 48 0 377 297 26 3 chr9 109482585 109482725 -32788719 + MIR SINE MIR 3 149 -62 348 308 127 23 chr9 109482892 109483113 -32788331 + MER102b DNA MER1_type 58 301 -40 327 277 143 17 chr9 109483362 109483481 -32787963 - L2 LINE L2 0 3272 3139 408 198 22 33 chr9 109483768 109483859 -32787585 - Tigger5 DNA MER2_type 0 2323 2234 309 185 0 0 chr9 109483867 109483921 -32787523 - Tigger5 DNA MER2_type -2269 54 1 339 235 98 0 chr9 109485454 109485556 -32785888 - MIR SINE MIR -33 229 118 400 278 28 0 chr9 109485822 109485930 -32785514 + L2 LINE L2 3181 3291 -22 2165 106 10 7 chr9 109485932 109486225 -32785219 - AluSx SINE Alu -18 294 1 360 244 28 20 chr9 109486690 109486795 -32784649 - MIR SINE MIR -62 146 41 1596 175 25 35 chr9 109486864 109487182 -32784262 + AluJb SINE Alu 1 315 0 21 36 0 0 chr9 109487722 109487750 -32783694 + AT_rich Low_complexity Low_complexity 1 28 0 1289 141 49 71 chr9 109488665 109488991 -32782453 - MER33 DNA MER1_type -5 319 1 411 269 16 67 chr9 109490069 109490262 -32781182 + MIR SINE MIR 34 216 -46 316 293 75 15 chr9 109491025 109491158 -32780286 + MIR SINE MIR 51 191 -71 218 204 68 0 chr9 109491403 109491447 -32779997 - L3 LINE CR1 -15 1562 1516 * 262 208 19 0 chr9 109491413 109491466 -32779978 - MIR3 SINE MIR -31 177 124 2017 170 38 38 chr9 109491689 109491872 -32779572 + MSTA LTR MaLR 1 183 -245 1727 113 21 101 chr9 109491872 109492200 -32779244 + AluYb8 SINE Alu 1 302 -16 2017 170 38 38 chr9 109492200 109492433 -32779011 + MSTA LTR MaLR 182 417 -11 420 280 99 13 chr9 109492848 109493080 -32778364 - L2 LINE L2 -194 3078 2827 610 307 61 0 chr9 109493172 109493384 -32778060 + MIR SINE MIR 8 232 -30 1423 227 76 17 chr9 109493674 109494018 -32777426 + MLT1A1 LTR MaLR 2 365 0 542 147 32 11 chr9 109494161 109494256 -32777188 + Charlie3 DNA MER1_type 2606 2702 -8 495 59 0 0 chr9 109495799 109495867 -32775577 + L1PA6 LINE L1 6084 6151 -3 496 96 0 36 chr9 109496316 109496399 -32775045 - MADE1 DNA Mariner 0 80 1 3566 178 34 43 chr9 109496513 109497833 -32773611 + L1MB7 LINE L1 4858 6165 -19 262 273 0 15 chr9 109497849 109497981 -32773463 + GA-rich Low_complexity Low_complexity 1 130 0 244 238 25 38 chr9 109498511 109498591 -32772853 + L2 LINE L2 3194 3272 0 2882 151 34 4 chr9 109498657 109499153 -32772291 - L1PA16 LINE L1 -9 6157 5647 441 276 47 8 chr9 109500034 109500161 -32771283 - MIR SINE MIR -117 145 14 383 341 71 83 chr9 109501293 109501741 -32769703 - L2 LINE L2 0 3272 2830 224 222 21 28 chr9 109501945 109502089 -32769355 + (TA)n Simple_repeat Simple_repeat 1 143 0 268 374 56 11 chr9 109502345 109502524 -32768920 + L1ME1 LINE L1 264 450 -5946 1945 118 26 36 chr9 109502538 109502842 -32768602 + AluSx SINE Alu 1 301 -11 267 54 0 0 chr9 109503129 109503166 -32768278 + (CA)n Simple_repeat Simple_repeat 2 38 0 261 139 0 0 chr9 109503166 109503209 -32768235 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 1551 273 70 66 chr9 109503225 109504347 -32767097 + L1ME1 LINE L1 747 1876 -4520 2270 92 3 3 chr9 109504347 109504650 -32766794 + AluSx SINE Alu 10 312 0 1551 273 70 66 chr9 109504650 109504782 -32766662 + L1ME1 LINE L1 1876 2006 -4390 1169 228 62 44 chr9 109504835 109505383 -32766061 + L1ME1 LINE L1 2901 3458 -2757 645 207 57 5 chr9 109505386 109505579 -32765865 + L1ME1 LINE L1 5173 5375 -840 883 276 45 39 chr9 109505592 109505904 -32765540 - LTR16B LTR ERVL -26 438 125 2706 237 83 10 chr9 109505984 109506694 -32764750 + L1ME1 LINE L1 5369 6130 -105 216 0 0 0 chr9 109506753 109506777 -32764667 + (CA)n Simple_repeat Simple_repeat 2 25 0 2383 57 3 10 chr9 109507994 109508294 -32763150 - AluY SINE Alu -9 302 5 28 48 0 0 chr9 109508712 109508754 -32762690 + AT_rich Low_complexity Low_complexity 1 42 0 938 286 26 20 chr9 109509550 109509899 -32761545 - L1ME3A LINE L1 -247 5923 5573 802 295 140 41 chr9 109509923 109510552 -32760892 + L2 LINE L2 2270 3028 -285 3087 112 50 0 chr9 109510552 109511054 -32760390 - L1MA5A LINE L1 0 6297 5771 802 295 140 41 chr9 109511054 109511372 -32760072 + L2 LINE L2 3028 3313 0 275 340 48 0 chr9 109511614 109511717 -32759727 + L2 LINE L2 3111 3218 -54 409 279 75 33 chr9 109512177 109512417 -32759027 - L1MC4 LINE L1 -2 8040 7791 306 265 54 29 chr9 109512517 109512733 -32758711 - L1MC5 LINE L1 -542 7495 7287 2635 42 0 6 chr9 109512897 109513218 -32758226 - L1PA4 LINE L1 -1203 4943 4623 7360 39 0 1 chr9 109513218 109514424 -32757020 + L1PA4 LINE L1 4948 6152 -3 2053 122 4 0 chr9 109514772 109515050 -32756394 - AluSp SINE Alu -34 279 1 1071 152 6 0 chr9 109515385 109515550 -32755894 + AluSc SINE Alu 1 166 -143 297 272 152 13 chr9 109565560 109565718 -32705726 + MIR SINE MIR 60 239 -23 193 210 129 0 chr9 109565919 109565981 -32705463 - L2 LINE L2 -4 3268 3199 387 302 111 17 chr9 109568813 109568985 -32702459 + MIR SINE MIR 69 256 -6 210 302 156 10 chr9 109569626 109569722 -32701722 + L2 LINE L2 3149 3258 -14 262 331 83 0 chr9 109571559 109571680 -32699764 - MER5A DNA MER1_type -41 148 18 183 42 0 0 chr9 109572147 109572171 -32699273 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 312 303 99 53 chr9 109574040 109574192 -32697252 - MIR3 SINE MIR -34 174 16 407 287 37 6 chr9 109574196 109574360 -32697084 + MER117 DNA MER1_type 1 169 -28 288 372 35 0 chr9 109574928 109575041 -32696403 - MIR3 SINE MIR -23 185 69 199 279 0 0 chr9 109575419 109575462 -32695982 + L2 LINE L2 3213 3255 -17 2617 27 0 0 chr9 109575465 109575764 -32695680 - AluY SINE Alu -12 299 1 386 296 78 9 chr9 109577066 109577181 -32694263 - L2 LINE L2 -1 3271 3149 387 60 0 0 chr9 109580100 109580150 -32691294 + (CA)n Simple_repeat Simple_repeat 1 50 0 274 267 67 11 chr9 109580606 109580696 -32690748 - MIR SINE MIR -84 124 30 473 258 12 60 chr9 109581145 109581312 -32690132 - MIR SINE MIR -70 192 34 621 254 63 16 chr9 109581451 109581640 -32689804 - MIR SINE MIR -63 199 2 209 392 0 10 chr9 109581882 109581984 -32689460 - L2 LINE L2 -533 2781 2681 857 162 68 145 chr9 109582076 109582427 -32689017 + MER33 DNA MER1_type 1 324 0 197 269 39 0 chr9 109583065 109583117 -32688327 - MIR SINE MIR -91 171 118 198 339 48 0 chr9 109583641 109583703 -32687741 + L2 LINE L2 3205 3269 -3 325 299 34 49 chr9 109584547 109584751 -32686693 - L1ME4a LINE L1 -72 6049 5849 233 243 14 0 chr9 109585427 109585501 -32685943 + HsTC2 DNA Tc2 1 75 -1823 352 365 36 16 chr9 109585609 109585801 -32685643 - L2 LINE L2 -45 3227 3032 806 146 24 146 chr9 109585801 109586048 -32685396 + MER20 DNA MER1_type 2 218 -1 502 305 71 13 chr9 109586386 109586589 -32684855 - MIR SINE MIR -30 232 19 198 0 0 0 chr9 109586617 109586639 -32684805 + (GA)n Simple_repeat Simple_repeat 1 22 0 195 42 0 0 chr9 109586640 109586664 -32684780 + (TG)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr9 109587243 109587270 -32684174 + AT_rich Low_complexity Low_complexity 1 27 0 13674 187 27 16 chr9 109587270 109587627 -32683817 - L1PB1 LINE L1 0 6867 6515 450 0 0 0 chr9 109587627 109587677 -32683767 + (TG)n Simple_repeat Simple_repeat 2 51 0 13674 187 27 16 chr9 109587677 109592791 -32678653 - L1PB1 LINE L1 -352 6515 1332 2686 237 138 12 chr9 109592808 109593834 -32677610 - L1PB1 LINE L1 -5700 1163 8 397 360 87 0 chr9 109594254 109594426 -32677018 - L1M4 LINE L1 -1929 4217 4031 418 313 114 48 chr9 109594853 109595565 -32675879 - L1M4 LINE L1 -2699 3447 2689 229 289 9 0 chr9 109595906 109596020 -32675424 - L1M4 LINE L1 -3840 2306 2192 339 25 0 0 chr9 109596326 109596366 -32675078 + (TA)n Simple_repeat Simple_repeat 2 41 0 297 0 0 0 chr9 109596370 109596403 -32675041 + (T)n Simple_repeat Simple_repeat 1 33 0 2127 123 3 3 chr9 109596618 109596910 -32674534 - AluSx SINE Alu 0 312 21 551 298 80 40 chr9 109597053 109597529 -32673915 - HAL1b LINE L1 -581 767 273 204 40 0 0 chr9 109597581 109597606 -32673838 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chr9 109598030 109598054 -32673390 + (T)n Simple_repeat Simple_repeat 1 24 0 915 210 28 0 chr9 109599102 109599283 -32672161 - MER5A DNA MER1_type -3 186 1 316 189 42 116 chr9 109600324 109600419 -32671025 + MIR3 SINE MIR 91 178 -30 202 264 69 69 chr9 109601083 109601170 -32670274 - L2 LINE L2 -41 3231 3145 2110 122 7 14 chr9 109601273 109601569 -32669875 - AluSx SINE Alu -18 294 1 730 195 124 12 chr9 109601953 109602122 -32669322 - MER20 DNA MER1_type -6 213 26 222 289 126 52 chr9 109602263 109602398 -32669046 - L2 LINE L2 -1 3312 3168 195 42 0 0 chr9 109602869 109602893 -32668551 + (T)n Simple_repeat Simple_repeat 1 24 0 2174 98 3 10 chr9 109605501 109605842 -32665602 - AluSg SINE Alu 0 310 1 204 309 11 0 chr9 109605991 109606085 -32665359 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 322 247 171 35 chr9 109613206 109613376 -32658068 + L1M2 LINE L1 532 724 -6125 212 132 53 0 chr9 109619532 109619570 -32651874 + CT-rich Low_complexity Low_complexity 2 41 0 196 205 0 0 chr9 109620350 109620389 -32651055 + MIR SINE MIR 117 155 -107 228 233 67 0 chr9 109621147 109621207 -32650237 + L2 LINE L2 3250 3313 0 913 273 29 4 chr9 109621722 109621960 -32649484 - MIR SINE MIR -1 261 18 305 307 30 72 chr9 109622061 109622325 -32649119 - L2 LINE L2 -801 2513 2261 21 0 0 0 chr9 109624753 109624774 -32646670 + AT_rich Low_complexity Low_complexity 1 21 0 313 253 177 5 chr9 109625203 109625401 -32646043 - L1ME4a LINE L1 -9 6112 5881 238 318 91 0 chr9 109625462 109625616 -32645828 - L1ME4a LINE L1 -333 5788 5621 242 328 103 0 chr9 109627598 109627714 -32643730 - L3 LINE CR1 -50 1527 1400 323 315 103 35 chr9 109627751 109627954 -32643490 + MIR SINE MIR 46 262 0 306 0 0 0 chr9 109630727 109630761 -32640683 + (TG)n Simple_repeat Simple_repeat 2 35 0 2219 162 56 2 chr9 109632104 109632498 -32638946 - L1MA5 LINE L1 -6 6294 5880 1047 188 6 11 chr9 109632498 109632679 -32638765 - MER58A DNA MER1_type -8 216 37 22 0 0 0 chr9 109634323 109634345 -32637099 + AT_rich Low_complexity Low_complexity 1 22 0 900 137 8 0 chr9 109634356 109634487 -32636957 + AluJo SINE Alu 3 134 -178 250 341 82 7 chr9 109635318 109635453 -32635991 - MIR SINE MIR -109 153 9 194 330 195 5 chr9 109635707 109635907 -32635537 - L2 LINE L2 -217 3055 2818 31 44 0 0 chr9 109636507 109636552 -32634892 + AT_rich Low_complexity Low_complexity 1 45 0 267 307 189 16 chr9 109636865 109636992 -32634452 + L2 LINE L2 3116 3264 -8 2314 98 3 0 chr9 109638475 109638770 -32632674 + AluSq SINE Alu 1 296 -17 21 0 0 0 chr9 109639080 109639101 -32632343 + AT_rich Low_complexity Low_complexity 1 21 0 347 271 99 24 chr9 109639838 109639994 -32631450 + MIR SINE MIR 38 212 -50 428 312 74 48 chr9 109640390 109640621 -32630823 - MIR SINE MIR 0 262 26 296 322 129 47 chr9 109640961 109641558 -32629886 + L2 LINE L2 1788 2433 -881 2066 149 49 32 chr9 109641796 109642165 -32629279 - THE1C LTR MaLR 0 375 1 15091 131 24 14 chr9 109642869 109645236 -32626208 - Tigger1 DNA MER2_type 0 2418 28 337 320 149 14 chr9 109645949 109646171 -32625273 + L2 LINE L2 2725 2976 -338 368 244 87 9 chr9 109647139 109647254 -32624190 - MIR SINE MIR -21 241 118 255 345 71 71 chr9 109649323 109649703 -32621741 - L2 LINE L2 -65 3207 2828 413 299 68 56 chr9 109649793 109650044 -32621400 - L2 LINE L2 -652 2662 2409 308 271 84 19 chr9 109651049 109651156 -32620288 - L2 LINE L2 -5 3308 3195 3362 178 91 3 chr9 109651347 109651676 -32619768 - L1MB2 LINE L1 -8 6163 5864 306 0 0 0 chr9 109651676 109651710 -32619734 + (TG)n Simple_repeat Simple_repeat 2 35 0 3362 178 91 3 chr9 109651710 109652028 -32619416 - L1MB2 LINE L1 -307 5864 5459 324 372 16 8 chr9 109652734 109652863 -32618581 - L2 LINE L2 -176 3096 2967 184 333 129 0 chr9 109653251 109653383 -32618061 - L2 LINE L2 -849 2465 2317 234 263 0 18 chr9 109654344 109654401 -32617043 + L2 LINE L2 3255 3310 -3 342 225 83 25 chr9 109654875 109654995 -32616449 + L2 LINE L2 3138 3264 -8 275 312 108 19 chr9 109655808 109655965 -32615479 + MIR SINE MIR 20 190 -72 22 70 0 0 chr9 109656087 109656130 -32615314 + AT_rich Low_complexity Low_complexity 1 43 0 270 0 0 0 chr9 109656205 109656235 -32615209 + (TTGG)n Simple_repeat Simple_repeat 4 33 0 214 191 0 0 chr9 109658472 109658514 -32612930 + T-rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr9 109658762 109658786 -32612658 + AT_rich Low_complexity Low_complexity 1 24 0 1408 174 17 27 chr9 109659281 109659580 -32611864 + L1MA9 LINE L1 6013 6308 -4 758 231 6 22 chr9 109660632 109660814 -32610630 + MIR SINE MIR 73 251 -11 181 143 0 0 chr9 109662601 109662629 -32608815 + MIR SINE MIR 229 256 -6 230 197 28 42 chr9 109662849 109662920 -32608524 + CT-rich Low_complexity Low_complexity 2 71 0 196 290 54 43 chr9 109663581 109663674 -32607770 - MIR SINE MIR -50 212 119 699 253 47 43 chr9 109664374 109664627 -32606817 - MIR SINE MIR 0 262 9 286 337 40 0 chr9 109665226 109665327 -32606117 - L2 LINE L2 0 3272 3168 1402 229 77 20 chr9 109665470 109665910 -32605534 - MLT1C LTR MaLR -2 465 1 304 111 0 0 chr9 109666325 109666370 -32605074 - L2 LINE L2 -1 3312 3268 276 327 19 9 chr9 109667249 109667356 -32604088 - L2 LINE L2 -46 3267 3160 406 302 49 40 chr9 109669172 109669397 -32602047 + MIR SINE MIR 20 246 -16 437 349 29 19 chr9 109669489 109669698 -32601746 + L3b LINE CR1 1111 1321 -262 1023 205 28 9 chr9 109670009 109670224 -32601220 + MER20 DNA MER1_type 1 219 0 364 279 32 46 chr9 109671358 109671514 -32599930 + MIR SINE MIR 20 177 -61 333 193 48 48 chr9 109672603 109672686 -32598758 - MER58A DNA MER1_type 0 224 142 1285 138 0 5 chr9 109672702 109672897 -32598547 + AluJb SINE Alu 74 267 -45 516 194 102 0 chr9 109672905 109673013 -32598431 - MER58A DNA MER1_type 0 119 1 344 277 129 7 chr9 109674088 109674243 -32597201 + MIR SINE MIR 18 191 -71 397 317 19 6 chr9 109674254 109674415 -32597029 - Tigger8 DNA MER2_type -5 661 499 9366 204 50 10 chr9 109674442 109674778 -32596666 - L1PB1 LINE L1 -21 6130 5809 567 0 0 0 chr9 109674778 109674841 -32596603 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 9366 204 50 10 chr9 109674841 109675898 -32595546 - L1PB1 LINE L1 -342 5809 4795 1860 148 13 62 chr9 109675898 109676271 -32595173 - THE1A LTR MaLR 0 355 1 9366 204 50 10 chr9 109676271 109678357 -32593087 - L1PB1 LINE L1 -1356 4795 2510 1354 240 60 42 chr9 109678366 109678866 -32592578 - Tigger8 DNA MER2_type -153 513 5 2498 236 76 18 chr9 109678866 109679641 -32591803 + L1ME1 LINE L1 4145 4874 -1292 387 0 0 0 chr9 109679641 109679684 -32591760 + (CA)n Simple_repeat Simple_repeat 2 44 0 2498 236 76 18 chr9 109679684 109680276 -32591168 + L1ME1 LINE L1 4874 5622 -544 1233 206 24 10 chr9 109680294 109680585 -32590859 + L1ME1 LINE L1 5757 6051 -115 258 215 0 0 chr9 109680585 109680650 -32590794 + L1MB8 LINE L1 6100 6164 -14 216 308 0 0 chr9 109681398 109681450 -32589994 + C-rich Low_complexity Low_complexity 2 53 0 944 182 6 6 chr9 109681551 109681710 -32589734 - FRAM SINE Alu -7 159 1 21 0 0 0 chr9 109681990 109682011 -32589433 + AT_rich Low_complexity Low_complexity 1 21 0 244 293 0 0 chr9 109682724 109682782 -32588662 + L2 LINE L2 3215 3272 0 7413 39 0 5 chr9 109683617 109684568 -32586876 - L1PA5 LINE L1 0 6154 5203 206 429 53 8 chr9 109684643 109684776 -32586668 - L2 LINE L2 -27 3245 3107 471 92 13 0 chr9 109684918 109684994 -32586450 - L1MA9 LINE L1 -5 6307 6231 1698 165 17 23 chr9 109684994 109685346 -32586098 + L1MA9 LINE L1 5512 5861 -451 1362 207 63 9 chr9 109685566 109685885 -32585559 + MER58B DNA MER1_type 2 337 -4 2388 106 0 3 chr9 109686398 109686710 -32584734 - AluSx SINE Alu -1 311 1 238 309 18 87 chr9 109687113 109687388 -32584056 + L1ME4a LINE L1 5581 5836 -285 318 298 57 21 chr9 109687433 109687574 -32583870 + L1ME4a LINE L1 5922 6067 -54 351 294 175 38 chr9 109687657 109688274 -32583170 - L2 LINE L2 -42 3271 2572 198 0 0 0 chr9 109688748 109688770 -32582674 + (TGAA)n Simple_repeat Simple_repeat 4 25 0 321 341 59 7 chr9 109689228 109689363 -32582081 - MIR SINE MIR -102 160 19 205 194 73 186 chr9 109690045 109690169 -32581275 + L2 LINE L2 3134 3243 -29 276 169 56 45 chr9 109691780 109691869 -32579575 + L1MC4 LINE L1 7953 8042 0 421 286 30 89 chr9 109692179 109692347 -32579097 + MIR SINE MIR 28 185 -77 5400 132 33 6 chr9 109692391 109693981 -32577463 - L1MA8 LINE L1 -3 6288 4653 297 266 38 0 chr9 109693981 109694060 -32577384 + MIR SINE MIR 169 250 -12 243 114 0 0 chr9 109699284 109699328 -32572116 + (A)n Simple_repeat Simple_repeat 1 44 0 231 36 0 0 chr9 109699903 109699931 -32571513 + (T)n Simple_repeat Simple_repeat 1 28 0 270 81 0 0 chr9 109700229 109700266 -32571178 + (T)n Simple_repeat Simple_repeat 1 37 0 297 185 0 0 chr9 109700430 109700495 -32570949 + (TG)n Simple_repeat Simple_repeat 1 65 0 243 152 0 0 chr9 109700892 109700938 -32570506 + A-rich Low_complexity Low_complexity 1 46 0 291 222 51 51 chr9 109702601 109702718 -32568726 - MLT1J1 LTR MaLR -286 160 44 403 332 54 21 chr9 109703533 109703774 -32567670 - L1ME4a LINE L1 -262 5859 5611 601 290 22 7 chr9 109703857 109703995 -32567449 + MIR SINE MIR 15 154 -108 479 276 32 38 chr9 109704724 109704909 -32566535 + MLT1J LTR MaLR 14 197 -314 209 278 0 0 chr9 109705783 109705837 -32565607 + L2 LINE L2 3007 3060 -212 321 256 0 0 chr9 109705887 109705965 -32565479 - MIR SINE MIR -5 257 180 1678 212 67 38 chr9 109705965 109706413 -32565031 - MLT1C LTR MaLR 0 467 7 375 269 144 6 chr9 109706418 109706578 -32564866 - MIR SINE MIR -77 185 4 289 303 0 11 chr9 109706585 109706668 -32564776 + L2 LINE L2 3225 3307 -1 423 0 0 0 chr9 109706668 109706715 -32564729 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 432 269 63 63 chr9 109708248 109708423 -32563021 + MIR SINE MIR 15 189 -73 250 310 112 0 chr9 109708521 109708637 -32562807 + MIR SINE MIR 118 246 -16 328 260 110 24 chr9 109708766 109708893 -32562551 + MIR SINE MIR 25 162 -100 268 216 78 49 chr9 109708951 109709053 -32562391 + L2 LINE L2 3195 3299 -14 279 292 0 0 chr9 109709625 109709714 -32561730 - MIR SINE MIR -12 250 162 368 231 88 123 chr9 109709926 109710177 -32561267 + L2 LINE L2 2999 3240 -32 532 248 109 55 chr9 109710187 109710425 -32561019 - MLT1L LTR MaLR -6 609 359 277 338 15 30 chr9 109711180 109711313 -32560131 + MIR SINE MIR 14 144 -118 401 215 68 98 chr9 109712458 109712520 -32558924 + MIR SINE MIR 102 164 -98 207 0 0 0 chr9 109712520 109712543 -32558901 + (TTA)n Simple_repeat Simple_repeat 2 24 0 401 215 68 98 chr9 109712543 109712643 -32558801 + MIR SINE MIR 164 259 -3 378 188 40 10 chr9 109713436 109713537 -32557907 - L1ME4a LINE L1 -1 6120 6017 896 276 71 40 chr9 109713561 109714039 -32557405 + L2 LINE L2 2156 2648 -666 637 149 0 46 chr9 109714138 109714313 -32557131 + (TA)n Simple_repeat Simple_repeat 1 167 0 360 195 0 61 chr9 109714356 109714743 -32556701 + (TA)n Simple_repeat Simple_repeat 1 363 0 202 215 31 31 chr9 109714750 109714815 -32556629 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 211 202 0 65 chr9 109714822 109714990 -32556454 + (TA)n Simple_repeat Simple_repeat 2 158 0 426 201 0 77 chr9 109715016 109715210 -32556234 + (TA)n Simple_repeat Simple_repeat 1 179 0 200 174 27 87 chr9 109715217 109715401 -32556043 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 200 174 27 87 chr9 109715412 109715596 -32555848 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 200 174 27 87 chr9 109715607 109715791 -32555653 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 200 174 27 87 chr9 109715802 109715986 -32555458 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 200 191 0 63 chr9 109716003 109716066 -32555378 + (TATG)n Simple_repeat Simple_repeat 2 60 0 429 175 5 58 chr9 109716073 109716262 -32555182 + (TA)n Simple_repeat Simple_repeat 2 180 0 1098 282 97 19 chr9 109717192 109717604 -32553840 + LTR16A LTR ERVL 1 444 -6 599 242 115 79 chr9 109718475 109718916 -32552528 + MLT1H LTR MaLR 20 525 -24 1271 234 40 20 chr9 109719188 109719534 -32551910 - L1ME2 LINE L1 -3 6161 5809 2619 103 11 16 chr9 109719534 109719911 -32551533 + THE1C LTR MaLR 1 375 0 1087 86 26 0 chr9 109719911 109720063 -32551381 + THE1C-int LTR MaLR 1 156 -1424 * 1286 80 17 0 chr9 109720060 109720235 -32551209 + THE1C-int LTR MaLR 97 274 -1306 764 231 51 39 chr9 109720236 109720564 -32550880 + MLT2B3 LTR ERVL 205 535 -19 780 89 0 0 chr9 109720564 109720676 -32550768 - L1P LINE L1 -957 5189 5078 2445 114 22 3 chr9 109720904 109721271 -32550173 + THE1C LTR MaLR 2 375 0 278 244 39 0 chr9 109721741 109721819 -32549625 + MIR SINE MIR 64 144 -64 849 234 16 5 chr9 109722083 109722267 -32549177 - MER5A DNA MER1_type -1 188 3 3109 93 18 9 chr9 109722269 109722720 -32548724 - L1P4 LINE L1 -434 5729 5275 431 320 68 63 chr9 109723225 109723638 -32547806 + LTR67 LTR ERVL 25 439 -118 211 365 37 0 chr9 109723743 109723850 -32547594 + MIR SINE MIR 38 148 -60 238 250 213 9 chr9 109724103 109724211 -32547233 + L2 LINE L2 3137 3266 -6 212 278 0 42 chr9 109724952 109725024 -32546420 + GA-rich Low_complexity Low_complexity 4 72 0 950 299 33 53 chr9 109725348 109725743 -32545701 - MLT1I LTR MaLR -4 405 19 183 220 0 0 chr9 109725748 109725798 -32545646 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1182 167 25 15 chr9 109725822 109726026 -32545418 - Tigger3(Golem) DNA MER2_type -2 3027 2822 407 294 94 29 chr9 109726378 109726590 -32544854 - MIR SINE MIR 0 262 42 291 261 45 0 chr9 109726784 109726872 -32544572 + L3 LINE CR1 1168 1259 -318 455 276 78 26 chr9 109727033 109727225 -32544219 + MIR SINE MIR 20 221 -41 318 123 0 0 chr9 109727769 109727826 -32543618 + (TG)n Simple_repeat Simple_repeat 2 58 0 519 280 96 56 chr9 109727879 109728326 -32543118 + L2 LINE L2 2178 2642 -672 810 183 0 0 chr9 109728349 109728480 -32542964 + FLAM_A SINE Alu 1 131 -2 1565 200 27 3 chr9 109728569 109728869 -32542575 - AluJb SINE Alu -1 311 5 243 253 25 25 chr9 109728928 109729007 -32542437 + L2 LINE L2 3173 3251 -21 1910 165 25 22 chr9 109729441 109729799 -32541645 - MLT1A2 LTR MaLR -4 370 12 326 327 88 52 chr9 109729853 109729944 -32541500 - MIR SINE MIR -1 261 175 2349 165 28 31 chr9 109729944 109730369 -32541075 + MSTB LTR MaLR 1 424 -2 326 327 88 52 chr9 109730369 109730528 -32540916 - MIR SINE MIR -87 175 2 1989 124 14 0 chr9 109730535 109730825 -32540619 - MER58B DNA MER1_type 0 341 48 594 233 78 81 chr9 109731007 109731329 -32540115 + L2 LINE L2 2989 3309 -4 2000 126 0 7 chr9 109731393 109731679 -32539765 + AluSx SINE Alu 1 284 -28 262 351 13 13 chr9 109733286 109733440 -32538004 - MIR3 SINE MIR -25 183 30 2368 70 0 3 chr9 109733449 109733784 -32537660 - AluY SINE Alu 0 334 1 364 269 70 64 chr9 109733822 109733993 -32537451 + MIR SINE MIR 20 191 -71 401 296 113 6 chr9 109734732 109734891 -32536553 - MIR SINE MIR -13 249 74 223 302 85 9 chr9 109734941 109735047 -32536397 - MIR SINE MIR -77 185 72 246 291 163 33 chr9 109735442 109735865 -32535579 + L2 LINE L2 1879 2356 -958 305 312 82 57 chr9 109736169 109736686 -32534758 + L2 LINE L2 2730 3259 -13 637 282 41 0 chr9 109736720 109736915 -32534529 - MIR SINE MIR -10 252 50 406 267 70 127 chr9 109738184 109738555 -32532889 + L2 LINE L2 2917 3266 -6 277 314 0 39 chr9 109738571 109738673 -32532771 + MER5B DNA MER1_type 5 102 -76 887 158 12 18 chr9 109738683 109738854 -32532590 - MER5A DNA MER1_type -18 171 2 266 245 349 0 chr9 109738994 109739100 -32532344 - MER5A DNA MER1_type -6 183 41 923 207 17 78 chr9 109739113 109739345 -32532099 - MER58A DNA MER1_type 0 224 7 277 194 118 0 chr9 109739814 109739907 -32531537 - MIR SINE MIR -27 235 132 688 271 36 24 chr9 109740137 109740388 -32531056 - MIR SINE MIR 0 262 9 759 288 59 28 chr9 109741593 109741864 -32529580 - MLT1K LTR MaLR -2 586 325 1943 157 38 29 chr9 109741864 109742208 -32529236 + MER7A DNA MER2_type 1 345 -1 759 288 59 28 chr9 109742208 109742471 -32528973 - MLT1K LTR MaLR -263 325 2 303 268 31 10 chr9 109742474 109742571 -32528873 + L2 LINE L2 3215 3313 0 186 71 0 0 chr9 109742826 109742854 -32528590 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 315 321 75 0 chr9 109742855 109742961 -32528483 - L2 LINE L2 -13 3259 3146 219 109 43 0 chr9 109742975 109743021 -32528423 + A-rich Low_complexity Low_complexity 3 50 0 2194 116 7 0 chr9 109743060 109743352 -32528092 + AluSx SINE Alu 1 294 -18 344 306 33 22 chr9 109743373 109743553 -32527891 + MIR SINE MIR 47 228 -34 388 352 9 47 chr9 109743578 109743791 -32527653 - L2 LINE L2 -177 3095 2891 785 253 72 78 chr9 109745052 109745498 -32525946 - MLT1J1 LTR MaLR -1 445 3 1466 212 28 19 chr9 109746124 109746483 -32524961 - MLT1A1 LTR MaLR -3 362 1 287 98 0 0 chr9 109746734 109746775 -32524669 + L1ME2 LINE L1 6124 6164 0 938 258 116 30 chr9 109748084 109748445 -32522999 - LTR16A LTR ERVL -43 407 16 1605 172 154 12 chr9 109748539 109748882 -32522562 - MSTD LTR MaLR 0 396 5 378 258 150 36 chr9 109748938 109749105 -32522339 - MIR3 SINE MIR -3 205 20 13846 125 60 42 chr9 109749181 109751550 -32519894 - Tigger1 DNA MER2_type -5 2413 3 2772 131 66 68 chr9 109751589 109752163 -32519281 + MER4B LTR ERV1 2 574 -36 212 151 226 0 chr9 109752484 109752537 -32518907 - L2 LINE L2 -188 3084 3020 183 229 16 33 chr9 109753037 109753098 -32518346 + L2 LINE L2 2939 2998 -274 301 267 67 33 chr9 109753123 109753213 -32518231 - MER58 DNA MER1_type -121 94 2 283 292 39 26 chr9 109753247 109753401 -32518043 - L2 LINE L2 -467 2847 2692 1990 197 2 58 chr9 109755584 109756011 -32515433 - MER57A LTR ERV1 0 403 1 611 250 54 85 chr9 109756826 109756945 -32514499 - MIR SINE MIR 0 262 141 1972 117 3 62 chr9 109756945 109757127 -32514317 - AluSx SINE Alu -7 305 114 207 0 0 0 chr9 109757127 109757150 -32514294 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1958 127 0 4 chr9 109757150 109757426 -32514018 - AluSc SINE Alu -30 279 5 1972 117 3 62 chr9 109757426 109757551 -32513893 - AluSx SINE Alu -196 116 15 611 250 54 85 chr9 109757551 109757691 -32513753 - MIR SINE MIR -121 141 11 264 335 146 6 chr9 109757723 109757887 -32513557 - MIR SINE MIR -73 189 3 22 0 0 0 chr9 109758099 109758121 -32513323 + AT_rich Low_complexity Low_complexity 1 22 0 221 180 20 0 chr9 109759291 109759341 -32512103 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 248 337 12 0 chr9 109760517 109760600 -32510844 + MIR3 SINE MIR 77 160 -48 2476 79 0 0 chr9 109760742 109761046 -32510398 - AluY SINE Alu -2 309 6 273 369 27 13 chr9 109761705 109761854 -32509590 + L2 LINE L2 2607 2757 -557 468 111 0 0 chr9 109762450 109762522 -32508922 + (CA)n Simple_repeat Simple_repeat 2 73 0 1956 202 55 22 chr9 109762651 109763102 -32508342 - MLT1C LTR MaLR 0 467 2 1708 129 0 0 chr9 109763243 109763476 -32507968 + AluSx SINE Alu 1 233 -79 2087 110 0 0 chr9 109763592 109763864 -32507580 - AluSx SINE Alu -25 287 16 662 141 173 6 chr9 109763909 109764065 -32507379 - L1MB3 LINE L1 -11 6172 5991 299 196 68 0 chr9 109764240 109764388 -32507056 + (TATATG)n Simple_repeat Simple_repeat 2 159 0 211 293 27 27 chr9 109764711 109764786 -32506658 - L2 LINE L2 -13 3300 3226 510 310 75 28 chr9 109765279 109765534 -32505910 + L2 LINE L2 2086 2352 -962 587 154 8 0 chr9 109765578 109765695 -32505749 + CT-rich Low_complexity Low_complexity 1 118 0 189 0 0 0 chr9 109765695 109765716 -32505728 + (TG)n Simple_repeat Simple_repeat 1 21 0 1007 158 40 0 chr9 109765893 109766045 -32505399 + FRAM SINE Alu 2 159 -7 1071 144 0 0 chr9 109766714 109766867 -32504577 + L1MB5 LINE L1 6015 6167 -7 786 293 125 27 chr9 109766926 109767435 -32504009 + L2 LINE L2 2742 3312 -1 617 129 58 7 chr9 109767435 109767574 -32503870 + GA-rich Low_complexity Low_complexity 4 149 0 200 204 0 0 chr9 109767911 109767955 -32503489 + L2 LINE L2 3184 3227 -86 521 301 75 5 chr9 109768052 109768238 -32503206 + MIR3 SINE MIR 10 208 0 427 277 146 41 chr9 109768455 109768675 -32502769 + MIR SINE MIR 10 252 -10 635 177 14 34 chr9 109769145 109769292 -32502152 + L1M4 LINE L1 5155 5298 -848 1544 209 16 19 chr9 109769915 109770231 -32501213 + MER58B DNA MER1_type 27 341 0 408 254 102 17 chr9 109770330 109770448 -32500996 + MIR3 SINE MIR 43 170 -38 219 281 16 0 chr9 109770459 109770523 -32500921 - L2 LINE L2 0 3272 3208 2252 136 0 0 chr9 109770608 109770917 -32500527 + AluSx SINE Alu 1 309 -3 3128 127 36 6 chr9 109771156 109771653 -32499791 + L1MA8 LINE L1 5773 6284 -7 374 353 59 0 chr9 109772103 109772290 -32499154 - MIR SINE MIR -57 205 8 2160 130 3 0 chr9 109772359 109772666 -32498778 - AluSx SINE Alu -4 308 1 571 101 0 0 chr9 109773222 109773301 -32498143 - MADE1 DNA Mariner -1 79 1 363 328 37 21 chr9 109774408 109774597 -32496847 - L3 LINE CR1 -860 717 526 10716 215 72 27 chr9 109775134 109777390 -32494054 + L1MD1 LINE L1 21 2173 -4367 971 151 34 11 chr9 109777390 109777569 -32493875 + L1MA6 LINE L1 6116 6298 -2 10716 215 72 27 chr9 109777569 109778999 -32492445 + L1MD1 LINE L1 2173 3952 -2588 2304 114 0 0 chr9 109778999 109779305 -32492139 + AluSc SINE Alu 1 306 -3 10716 215 72 27 chr9 109779305 109780111 -32491333 + L1MD1 LINE L1 3952 4720 -1820 241 179 0 0 chr9 109780115 109780154 -32491290 - Alu SINE Alu -260 40 2 3089 148 127 30 chr9 109780155 109780731 -32490713 - Tigger1 DNA MER2_type -1765 653 22 3878 163 58 11 chr9 109780740 109781731 -32489713 + L1MD1 LINE L1 5278 6308 -328 1885 28 9 0 chr9 109781734 109781949 -32489495 - L1PA4 LINE L1 0 6155 5939 1804 160 46 3 chr9 109781949 109782251 -32489193 + L1MD1 LINE L1 6312 6631 -5 201 322 0 0 chr9 109782266 109782325 -32489119 - MIR3 SINE MIR -41 167 109 396 59 0 0 chr9 109782933 109782984 -32488460 + (TG)n Simple_repeat Simple_repeat 2 52 0 263 319 134 0 chr9 109784026 109784145 -32487299 + MIR SINE MIR 58 192 -70 2084 138 0 7 chr9 109784240 109784582 -32486862 - AluSx SINE Alu 0 312 1 240 216 171 23 chr9 109785314 109785402 -32486042 + MER5A DNA MER1_type 89 189 0 530 337 91 18 chr9 109785731 109786016 -32485428 + L2 LINE L2 2964 3269 -3 243 291 76 0 chr9 109786033 109786112 -32485332 - MIR SINE MIR -62 146 62 1046 269 85 58 chr9 109786257 109786947 -32484497 + L2 LINE L2 2476 3192 -121 510 274 0 0 chr9 109787075 109787188 -32484256 - MIR SINE MIR -118 144 32 281 261 45 54 chr9 109787711 109787822 -32483622 + MIR SINE MIR 67 176 -86 259 180 0 0 chr9 109788199 109788249 -32483195 + MIR SINE MIR 104 153 -109 565 218 112 35 chr9 109789260 109789430 -32482014 + MIR SINE MIR 80 262 0 2466 57 0 3 chr9 109789915 109790211 -32481233 + AluY SINE Alu 7 301 -10 240 226 32 16 chr9 109790291 109790353 -32481091 + MER5A DNA MER1_type 39 101 -88 190 337 21 11 chr9 109790384 109790479 -32480965 + MER5A DNA MER1_type 93 188 -1 370 302 99 5 chr9 109790949 109791141 -32480303 - MIR SINE MIR -16 246 37 839 273 118 28 chr9 109791769 109792191 -32479253 - MLT1L LTR MaLR -5 610 151 339 238 177 27 chr9 109792972 109793119 -32478325 - MIR3 SINE MIR -24 184 16 225 245 0 0 chr9 109794612 109794661 -32476783 + MIR SINE MIR 12 60 -202 497 194 16 0 chr9 109794721 109794845 -32476599 + GA-rich Low_complexity Low_complexity 3 128 0 212 163 143 61 chr9 109794848 109794946 -32476498 + MIR SINE MIR 157 262 0 252 268 14 14 chr9 109795480 109795551 -32475893 + L2 LINE L2 372 442 -2872 194 273 0 0 chr9 109795766 109795810 -32475634 + L2 LINE L2 3263 3306 -7 321 345 98 34 chr9 109796359 109796580 -32474864 + L2 LINE L2 1853 2058 -1256 2501 84 0 0 chr9 109796580 109796889 -32474555 - AluSg SINE Alu -1 309 1 321 345 98 34 chr9 109796889 109797105 -32474339 + L2 LINE L2 2058 2318 -996 192 77 0 0 chr9 109797635 109797661 -32473783 + (CCA)n Simple_repeat Simple_repeat 2 27 0 246 288 136 54 chr9 109799040 109799224 -32472220 - MIR SINE MIR -51 211 13 267 345 123 48 chr9 109799330 109799663 -32471781 + L2 LINE L2 2915 3272 0 180 228 0 0 chr9 109799673 109799730 -32471714 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 806 314 58 0 chr9 109800031 109800273 -32471171 - MIR SINE MIR -1 261 6 485 252 176 48 chr9 109800318 109800528 -32470916 - MIR SINE MIR -12 250 14 610 258 50 27 chr9 109800593 109800784 -32470660 + MIR SINE MIR 19 211 -51 237 348 8 25 chr9 109800848 109800966 -32470478 - MIR SINE MIR -76 132 17 363 327 70 5 chr9 109802119 109802318 -32469126 + L3 LINE CR1 1018 1229 -348 445 264 14 47 chr9 109802402 109802550 -32468894 + L2 LINE L2 2681 2823 -491 1266 168 0 59 chr9 109802905 109803143 -32468301 - AluJo SINE Alu -78 234 11 266 235 76 144 chr9 109803270 109803547 -32467897 + L2 LINE L2 2984 3241 -72 391 162 0 0 chr9 109803547 109803615 -32467829 - MLT1F LTR MaLR 0 542 475 2351 205 54 4 chr9 109804789 109805253 -32466191 - MLT1F LTR MaLR -55 487 1 241 312 13 13 chr9 109805253 109805330 -32466114 + L2 LINE L2 3196 3272 0 912 289 112 0 chr9 109806823 109807128 -32464316 + MLT1I LTR MaLR 66 404 -5 319 288 114 0 chr9 109807434 109807566 -32463878 + MIR SINE MIR 20 166 -96 346 252 63 47 chr9 109807713 109807840 -32463604 - MLT2E LTR ERVL -499 129 1 189 271 119 17 chr9 109807923 109808041 -32463403 - L2 LINE L2 -575 2739 2610 299 272 36 25 chr9 109808490 109808636 -32462808 + MLT1J2 LTR MaLR 72 219 -190 326 266 40 16 chr9 109808688 109808812 -32462632 + MIR SINE MIR 120 246 -16 2058 135 43 0 chr9 109808929 109809277 -32462167 - L1MB1 LINE L1 -7 6161 5799 328 123 346 0 chr9 109809504 109809585 -32461859 - L1MB1 LINE L1 -1997 5811 5703 311 367 31 0 chr9 109809995 109810123 -32461321 + MIR3 SINE MIR 2 133 -75 389 219 106 16 chr9 109810397 109810520 -32460924 + MER94 DNA DNA 1 134 0 204 364 40 30 chr9 109810842 109810941 -32460503 - L2 LINE L2 -36 3236 3137 1180 299 44 32 chr9 109811967 109812402 -32459042 - MLT1K LTR MaLR -23 565 126 410 346 39 0 chr9 109812464 109812620 -32458824 + MLT1J1 LTR MaLR 1 162 -284 303 188 43 14 chr9 109812739 109812808 -32458636 + MLT1J1 LTR MaLR 374 444 -2 397 238 77 14 chr9 109812948 109813114 -32458330 + MIR SINE MIR 22 195 -65 219 200 62 62 chr9 109814776 109814841 -32456603 + MIR SINE MIR 87 145 -63 736 306 50 15 chr9 109814985 109815322 -32456122 + L2 LINE L2 2457 2805 -509 444 288 68 8 chr9 109815613 109815745 -32455699 + L2 LINE L2 3133 3272 0 287 346 89 19 chr9 109816208 109816477 -32454967 - L1MC4a LINE L1 -1889 5919 5632 309 302 64 12 chr9 109816644 109816816 -32454628 - MIR SINE MIR -54 208 28 1525 154 95 18 chr9 109817294 109817579 -32453865 + AluSx SINE Alu 1 307 -5 268 335 10 16 chr9 109817787 109817981 -32453463 - L3 LINE CR1 -126 1451 1259 440 195 169 0 chr9 109818854 109818972 -32452472 - MIR SINE MIR -73 189 52 470 256 26 8 chr9 109819149 109819266 -32452178 - L2 LINE L2 -4 3309 3191 1875 139 59 25 chr9 109819540 109819864 -32451580 + MER1B DNA MER1_type 3 337 0 273 223 0 35 chr9 109820020 109820098 -32451346 - MIR SINE MIR -61 147 74 1529 168 157 64 chr9 109820266 109820736 -32450708 - Charlie1 DNA MER1_type -2 2759 2246 2224 61 43 4 chr9 109820736 109821015 -32450429 + AluY SINE Alu 1 290 -21 324 187 0 69 chr9 109821156 109821452 -32449992 + (TA)n Simple_repeat Simple_repeat 1 275 0 444 232 10 0 chr9 109821499 109821598 -32449846 - Charlie1 DNA MER1_type -599 2162 2063 761 218 39 13 chr9 109821599 109821755 -32449689 - Charlie1 DNA MER1_type -2601 160 1 198 371 9 9 chr9 109822404 109822520 -32448924 + L2 LINE L2 2625 2740 -574 2201 199 47 20 chr9 109822825 109823317 -32448127 + MLT1D LTR MaLR 1 505 0 1105 144 0 5 chr9 109823785 109823972 -32447472 - L1P LINE L1 -923 5223 5038 2828 94 40 0 chr9 109823972 109824373 -32447071 + L1PA13 LINE L1 5744 6162 -1 564 298 28 28 chr9 109824396 109824614 -32446830 + MIR SINE MIR 23 240 -22 1712 168 50 6 chr9 109824956 109825277 -32446167 - MER63 DNA MER1_type -76 985 651 357 180 16 0 chr9 109825279 109825340 -32446104 + MER58 DNA MER1_type 1 62 -153 1727 147 114 23 chr9 109826275 109826582 -32444862 + MER1B DNA MER1_type 1 335 -2 718 251 147 64 chr9 109826711 109827182 -32444262 - MLT1J LTR MaLR -1 510 1 415 231 58 16 chr9 109827242 109827363 -32444081 - LTR67 LTR ERVL -4 553 428 1752 180 7 0 chr9 109827550 109827844 -32443600 + AluJo SINE Alu 1 296 -16 466 194 37 9 chr9 109827857 109827965 -32443479 + L1MC3 LINE L1 7120 7230 -555 548 341 112 20 chr9 109827978 109828479 -32442965 - L2 LINE L2 -822 2492 1946 1687 137 87 63 chr9 109828827 109829193 -32442251 + THE1C LTR MaLR 1 375 0 271 250 34 0 chr9 109830147 109830235 -32441209 + MIR SINE MIR 118 208 -54 527 242 62 43 chr9 109830276 109830437 -32441007 - MER63A DNA MER1_type -26 184 21 297 75 0 0 chr9 109830443 109830483 -32440961 + (TTA)n Simple_repeat Simple_repeat 2 41 0 250 194 140 21 chr9 109830509 109830602 -32440842 - MIR SINE MIR -86 176 73 210 121 182 30 chr9 109832731 109832797 -32438647 + MIR SINE MIR 107 182 -80 1670 170 4 0 chr9 109832962 109833221 -32438223 + AluJb SINE Alu 1 260 -52 307 200 0 0 chr9 109833832 109833897 -32437547 + MIR SINE MIR 188 252 -10 209 261 58 29 chr9 109834218 109834287 -32437157 - L3 LINE CR1 -435 1142 1072 619 320 22 18 chr9 109834608 109834836 -32436608 + MIR SINE MIR 15 243 -19 185 364 109 25 chr9 109835110 109835349 -32436095 - L2 LINE L2 -508 2806 2548 518 253 75 0 chr9 109835599 109835745 -32435699 - L3 LINE CR1 -151 1426 1270 216 0 0 0 chr9 109835751 109835775 -32435669 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 287 336 92 40 chr9 109835817 109836067 -32435377 - L3 LINE CR1 -1081 496 234 579 301 141 16 chr9 109836166 109836535 -32434909 + L2 LINE L2 2899 3313 0 412 309 29 29 chr9 109837841 109838016 -32433428 + MER20B DNA MER1_type 1 175 -608 686 258 133 38 chr9 109838199 109838652 -32432792 + HAL1 LINE L1 2008 2503 -4 402 307 31 0 chr9 109839251 109839378 -32432066 - MIR SINE MIR -17 245 115 433 301 93 26 chr9 109839561 109839754 -32431690 - MIR SINE MIR -10 252 47 1659 223 118 44 chr9 109839779 109839842 -32431602 + MLT1F LTR MaLR 4 61 -481 2047 138 52 17 chr9 109839842 109840204 -32431240 - THE1C LTR MaLR 0 375 1 1659 223 118 44 chr9 109840204 109840642 -32430802 + MLT1F LTR MaLR 61 542 0 244 267 83 8 chr9 109841405 109841525 -32429919 - MIR SINE MIR -81 181 53 397 229 149 53 chr9 109841657 109841837 -32429607 + MIR SINE MIR 18 220 -42 353 75 19 0 chr9 109841837 109841890 -32429554 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 352 260 31 10 chr9 109842468 109842564 -32428880 + MIR SINE MIR 26 123 -85 259 239 28 0 chr9 109843444 109843515 -32427929 + L2 LINE L2 1528 1600 -1714 2230 257 115 27 chr9 109843522 109843819 -32427625 + L2 LINE L2 1739 2009 -1305 225 0 0 0 chr9 109843819 109843844 -32427600 + (CACCT)n Simple_repeat Simple_repeat 3 27 0 2230 257 115 27 chr9 109843844 109844471 -32426973 + L2 LINE L2 2009 2744 -570 508 253 15 92 chr9 109844477 109844805 -32426639 + L2 LINE L2 2998 3300 -13 218 31 0 31 chr9 109844805 109844837 -32426607 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1541 82 14 0 chr9 109846072 109846279 -32425165 + THE1A LTR MaLR 1 210 -145 5458 98 3 0 chr9 109846280 109846987 -32424457 + THE1A-int LTR MaLR 872 1580 0 2777 93 0 0 chr9 109846987 109847340 -32424104 + THE1A LTR MaLR 1 353 -2 1694 161 25 11 chr9 109847340 109847626 -32423818 + AluJb SINE Alu 18 307 -5 2727 178 4 36 chr9 109847626 109848160 -32423284 - L1MB5 LINE L1 -29 6145 5629 642 246 156 75 chr9 109848302 109848648 -32422796 - L2 LINE L2 -43 3270 2897 217 332 132 28 chr9 109848686 109849292 -32422152 + L2 LINE L2 1545 2213 -1101 2678 205 100 41 chr9 109849297 109849907 -32421537 - MER82 DNA MER2_type -6 647 2 190 323 114 63 chr9 109849938 109850641 -32420803 + L2 LINE L2 2238 2976 -338 2168 151 60 34 chr9 109851420 109851936 -32419508 + MLT2A2 LTR ERVL 1 552 -2 647 200 0 17 chr9 109852282 109852402 -32419042 - AluJo SINE Alu -138 174 57 263 355 162 0 chr9 109852402 109852599 -32418845 + L3 LINE CR1 947 1175 -402 23 68 0 0 chr9 109852827 109852871 -32418573 + AT_rich Low_complexity Low_complexity 1 44 0 729 313 68 17 chr9 109852976 109853270 -32418174 + MER90 LTR ERV1 260 568 -7 330 172 0 0 chr9 109853274 109853332 -32418112 - L2 LINE L2 -8 3305 3248 1887 174 0 0 chr9 109854036 109854330 -32417114 - AluJo SINE Alu -18 294 1 845 179 158 5 chr9 109854703 109854893 -32416551 + MER20 DNA MER1_type 1 219 0 548 203 36 109 chr9 109854911 109855013 -32416431 + MER3 DNA MER1_type 18 126 -83 1708 138 0 19 chr9 109855013 109855281 -32416163 - AluJb SINE Alu -17 295 33 548 203 36 109 chr9 109855281 109855314 -32416130 + MER3 DNA MER1_type 126 160 -49 1942 183 14 3 chr9 109855314 109855658 -32415786 - MER7A DNA MER2_type 0 346 1 2426 97 0 0 chr9 109855667 109855967 -32415477 - AluSx SINE Alu -12 300 1 548 203 36 109 chr9 109855967 109856012 -32415432 + MER3 DNA MER1_type 168 195 -14 209 333 14 0 chr9 109856112 109856181 -32415263 + L2 LINE L2 3136 3205 -67 262 293 13 13 chr9 109858056 109858131 -32413313 + L2 LINE L2 3193 3267 -5 281 131 0 82 chr9 109858165 109858226 -32413218 - MLT2D LTR ERVL 0 520 465 212 188 94 0 chr9 109858227 109858291 -32413153 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 1104 213 31 64 chr9 109858292 109858718 -32412726 - MLT2D LTR ERVL -50 414 1 293 381 0 0 chr9 109859372 109859490 -32411954 - MIR3 SINE MIR -1 207 90 512 281 7 36 chr9 109859832 109859971 -32411473 - L2 LINE L2 -1 3271 3137 3423 145 44 29 chr9 109859989 109860184 -32411260 + MER7C DNA MER2_type 1 192 -2836 2002 139 0 3 chr9 109860184 109860486 -32410958 + AluSx SINE Alu 1 301 -11 3423 145 44 29 chr9 109860486 109860883 -32410561 + MER7C DNA MER2_type 192 602 0 180 306 93 46 chr9 109861193 109861301 -32410143 - L2 LINE L2 -16 3256 3144 247 239 114 34 chr9 109862167 109862255 -32409189 + MIR SINE MIR 41 135 -73 670 241 18 0 chr9 109864449 109864615 -32406829 - MER5B DNA MER1_type -9 169 1 214 300 33 33 chr9 109864996 109865086 -32406358 - MIR SINE MIR -99 109 20 199 316 63 11 chr9 109865482 109865577 -32405867 - L2 LINE L2 -671 2643 2544 1701 187 86 43 chr9 109865609 109866052 -32405392 - MLT1C LTR MaLR 0 467 6 213 389 92 29 chr9 109866289 109866778 -32404666 - L2 LINE L2 -353 2961 2442 495 231 28 0 chr9 109867177 109867285 -32404159 - MER81 DNA DNA -2 112 2 280 381 109 14 chr9 109867292 109867439 -32404005 - L2 LINE L2 -15 3257 3097 1223 199 89 61 chr9 109867855 109868181 -32403263 - MLT1C LTR MaLR -8 459 163 255 122 98 0 chr9 109868205 109868246 -32403198 - Tigger5 DNA MER2_type -2244 79 35 6028 200 41 73 chr9 109868290 109870422 -32401022 + L1MA5 LINE L1 13 2879 -4330 1495 218 14 3 chr9 109870422 109870711 -32400733 + AluJo SINE Alu 1 292 -20 6028 200 41 73 chr9 109870711 109871069 -32400375 + L1MA5 LINE L1 2879 3247 -3962 7925 190 88 22 chr9 109871149 109872750 -32398694 + L1MA5 LINE L1 3238 4732 -2630 2458 83 0 0 chr9 109872750 109873050 -32398394 - AluY SINE Alu -11 300 1 7925 190 88 22 chr9 109873050 109874221 -32397223 + L1MA5 LINE L1 4732 5825 -1537 810 192 0 0 chr9 109874221 109874351 -32397093 + FLAM_A SINE Alu 4 133 0 7925 190 88 22 chr9 109874351 109875157 -32396287 + L1MA5 LINE L1 5825 7361 -1 667 242 33 13 chr9 109875175 109875328 -32396116 - MLT1C LTR MaLR -349 156 1 285 349 40 53 chr9 109875474 109875626 -32395818 + MER91A DNA MER1_type 26 175 -21 286 319 43 0 chr9 109875642 109875711 -32395733 + MER91A DNA MER1_type 124 195 -1 1011 230 0 0 chr9 109876049 109876227 -32395217 + MER45A DNA AcHobo 1 178 0 2317 72 20 3 chr9 109876479 109876771 -32394673 - AluSc SINE Alu -12 297 1 2121 132 3 7 chr9 109877483 109877787 -32393657 - AluSx SINE Alu -3 309 7 3082 189 30 2 chr9 109877825 109878449 -32392995 + L1 LINE L1 4119 4760 -1386 522 140 43 0 chr9 109878679 109878772 -32392672 - L1MA6 LINE L1 -1 6299 6203 1658 142 74 34 chr9 109878772 109879096 -32392348 - MER46B DNA MER2_type 0 236 25 2060 130 0 0 chr9 109879096 109879414 -32392030 - AluJb SINE Alu 0 318 1 2532 144 30 84 chr9 109879681 109880195 -32391249 + LTR12 LTR ERV1 119 581 -133 1833 116 112 7 chr9 109880195 109880498 -32390946 + MSTA LTR MaLR 94 428 0 363 224 14 65 chr9 109880597 109880722 -32390722 + MLT1J LTR MaLR 287 487 -128 2121 119 0 3 chr9 109881206 109881499 -32389945 + AluSx SINE Alu 5 296 -16 4294 170 65 20 chr9 109882398 109883246 -32388198 + Tigger6a DNA MER2_type 1 886 -197 755 211 38 24 chr9 109884089 109884302 -32387142 + MER112 DNA MER1_type 44 259 -1 2424 88 0 0 chr9 109884680 109884977 -32386467 + AluSc SINE Alu 1 297 -12 534 282 213 13 chr9 109886701 109887006 -32384438 - LTR16C LTR ERVL -8 483 118 783 324 51 18 chr9 109887443 109887897 -32383547 - HERVL LTR ERVL -1462 4192 3724 1613 322 74 26 chr9 109887922 109888994 -32382450 - HERVL LTR ERVL -2050 3435 2293 2215 133 0 0 chr9 109889675 109889977 -32381467 + AluSx SINE Alu 2 303 -9 225 94 0 0 chr9 109889977 109890009 -32381435 + (GA)n Simple_repeat Simple_repeat 1 32 0 1890 116 72 4 chr9 109890399 109890676 -32380768 - AluSg SINE Alu -14 296 1 23 0 0 0 chr9 109890997 109891020 -32380424 + AT_rich Low_complexity Low_complexity 1 23 0 204 97 0 0 chr9 109891153 109891184 -32380260 + (CA)n Simple_repeat Simple_repeat 2 32 0 420 300 17 49 chr9 109891193 109891476 -32379968 - L1MC4a LINE L1 -157 5964 5686 232 191 57 133 chr9 109891551 109891656 -32379788 + MLT1L LTR MaLR 148 244 -371 1984 109 7 18 chr9 109891699 109892009 -32379435 + AluY SINE Alu 1 307 0 506 257 71 22 chr9 109892052 109892235 -32379209 + MLT1L LTR MaLR 424 615 0 251 296 0 45 chr9 109892309 109892397 -32379047 - L1MC4a LINE L1 -539 5582 5499 385 271 0 25 chr9 109892431 109892549 -32378895 - MLT1K LTR MaLR -18 570 456 244 103 35 0 chr9 109892607 109892665 -32378779 + (TA)n Simple_repeat Simple_repeat 2 61 0 611 252 45 45 chr9 109893225 109893410 -32378034 + MLT1K LTR MaLR 118 316 -272 226 169 34 51 chr9 109893419 109893478 -32377966 + MLT1K LTR MaLR 472 529 -59 538 300 97 31 chr9 109894162 109894389 -32377055 - MIR SINE MIR 0 262 21 650 329 113 21 chr9 109896752 109897266 -32374178 + HAL1 LINE L1 1 561 -1946 259 240 67 0 chr9 109897358 109897433 -32374011 + HAL1 LINE L1 1452 1531 -976 216 252 82 59 chr9 109898505 109898640 -32372804 - L2 LINE L2 -873 2441 2304 1960 144 0 3 chr9 109898686 109899024 -32372420 + AluSx SINE Alu 2 338 0 1154 281 54 18 chr9 109899160 109899551 -32371893 - MLT1I LTR MaLR 0 409 5 2156 123 0 0 chr9 109900473 109900765 -32370679 + AluSx SINE Alu 1 292 -20 224 262 0 24 chr9 109900965 109901049 -32370395 + (TATAA)n Simple_repeat Simple_repeat 3 84 0 286 197 68 51 chr9 109901198 109901315 -32370129 + L1ME4a LINE L1 5992 6110 -11 1844 157 3 23 chr9 109901724 109902029 -32369415 - AluJb SINE Alu -13 299 1 261 351 48 6 chr9 109902146 109902314 -32369130 - L2 LINE L2 -1883 1431 1257 221 362 135 0 chr9 109903548 109903733 -32367711 - L2 LINE L2 -2128 1186 977 344 290 97 19 chr9 109904292 109904447 -32366997 + MIR SINE MIR 91 257 -5 890 224 274 70 chr9 109904910 109905384 -32366060 - MLT1E3 LTR MaLR -72 552 12 221 252 91 16 chr9 109906052 109906157 -32365287 - MIR SINE MIR -50 212 96 585 286 137 22 chr9 109907961 109908188 -32363256 + LTR16B LTR ERVL 1 253 -211 607 258 40 56 chr9 109908402 109908600 -32362844 - MIR SINE MIR -1 261 67 637 183 0 2 chr9 109908803 109908954 -32362490 - MER53 DNA DNA -1 188 1 670 280 66 33 chr9 109909050 109909293 -32362151 - MIR SINE MIR 0 262 12 454 210 158 58 chr9 109909487 109909753 -32361691 - L1ME4a LINE L1 -3 6118 5811 1569 184 104 39 chr9 109909753 109910117 -32361327 + MLT1B LTR MaLR 1 388 -2 454 210 158 58 chr9 109910117 109910179 -32361265 - L1ME4a LINE L1 -310 5811 5757 2788 137 17 0 chr9 109910179 109910588 -32360856 + MSTA LTR MaLR 1 416 -12 294 229 104 90 chr9 109910671 109910704 -32360740 - L1ME4a LINE L1 -466 5655 5624 512 231 28 9 chr9 109910704 109910812 -32360632 - MER81 DNA DNA 0 114 5 294 229 104 90 chr9 109910812 109910922 -32360522 - L1ME4a LINE L1 -497 5624 5510 1892 159 3 7 chr9 109911743 109912044 -32359400 - MLT2B1 LTR ERVL -220 300 1 482 261 106 19 chr9 109912383 109912544 -32358900 - MER5B DNA MER1_type 0 178 4 643 238 71 24 chr9 109912607 109912775 -32358669 - MER5B DNA MER1_type -2 176 1 2762 110 18 77 chr9 109913269 109913309 -32358135 - MSTA LTR MaLR 0 428 387 2035 146 0 3 chr9 109913309 109913604 -32357840 + AluSx SINE Alu 2 295 -17 2762 110 18 77 chr9 109913604 109914018 -32357426 - MSTA LTR MaLR -41 387 1 1247 253 119 14 chr9 109914266 109914693 -32356751 + MER90 LTR ERV1 75 546 -68 1299 199 8 31 chr9 109914703 109914956 -32356488 - MLT1E1 LTR MaLR -2 652 406 1613 100 56 41 chr9 109914956 109915285 -32356159 + THE1C LTR MaLR 1 375 0 622 214 301 73 chr9 109915285 109915644 -32355800 - MLT1E1 LTR MaLR -230 424 1 264 226 97 16 chr9 109915644 109915705 -32355739 + MER90 LTR ERV1 510 575 0 350 238 73 73 chr9 109916423 109916587 -32354857 - L2 LINE L2 0 3313 3150 2195 147 41 19 chr9 109916832 109917199 -32354245 + THE1C LTR MaLR 1 375 0 526 101 127 0 chr9 109917334 109917413 -32354031 + 5S rRNA rRNA 2 90 -31 2259 110 0 0 chr9 109917453 109917753 -32353691 + AluY SINE Alu 1 300 -11 221 330 133 12 chr9 109918023 109918196 -32353248 + L2 LINE L2 3119 3312 -1 613 300 136 54 chr9 109918236 109918767 -32352677 - L2 LINE L2 -276 3037 2490 496 249 83 24 chr9 109919044 109919213 -32352231 - L2 LINE L2 -831 2483 2305 2122 198 81 31 chr9 109919450 109919931 -32351513 + MLT1D LTR MaLR 1 505 0 2132 110 3 16 chr9 109919992 109920301 -32351143 + AluY SINE Alu 1 305 -6 1825 184 107 52 chr9 109920434 109920875 -32350569 + MER31B LTR ERV1 2 466 0 239 137 0 20 chr9 109921102 109921153 -32350291 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 219 188 21 21 chr9 109921167 109921215 -32350229 - L2 LINE L2 0 3272 3225 313 257 34 74 chr9 109921300 109921448 -32349996 - MIR SINE MIR -20 242 101 1868 168 34 3 chr9 109921451 109921779 -32349665 + L1MC1 LINE L1 5996 6333 0 1493 134 0 0 chr9 109922029 109922246 -32349198 - L1MB1 LINE L1 -2 6166 5950 234 0 0 0 chr9 109923212 109923238 -32348206 + (A)n Simple_repeat Simple_repeat 1 26 0 221 344 89 0 chr9 109923319 109923409 -32348035 - L2 LINE L2 -19 3253 3156 229 67 0 0 chr9 109925362 109925392 -32346052 - L1P5 LINE L1 -516 5635 5606 4239 87 12 3 chr9 109926386 109926952 -32344492 + L1PB1 LINE L1 5580 6150 -1 1904 101 4 0 chr9 109927133 109927381 -32344063 - AluSc SINE Alu -12 297 49 289 293 40 81 chr9 109927537 109927711 -32343733 - MIR SINE MIR -76 186 20 616 213 173 0 chr9 109927721 109927871 -32343573 - MER5A DNA MER1_type 0 189 14 183 333 20 50 chr9 109928698 109928797 -32342647 - L2 LINE L2 0 3272 3177 932 228 106 4 chr9 109928799 109929036 -32342408 - MIR SINE MIR 0 262 2 1792 179 3 3 chr9 109929134 109929435 -32342009 + AluJb SINE Alu 1 301 -11 543 189 76 16 chr9 109929436 109929577 -32341867 - MIR SINE MIR -62 146 31 2241 118 0 0 chr9 109930633 109930937 -32340507 + AluSx SINE Alu 1 304 -8 1713 179 13 0 chr9 109981122 109981440 -32290004 + MER33 DNA MER1_type 3 324 0 221 205 39 39 chr9 109982327 109982405 -32289039 - MIR SINE MIR -1 261 184 329 247 49 0 chr9 109982410 109982491 -32288953 + MIR SINE MIR 178 262 0 * 434 284 0 37 chr9 109982461 109982593 -32288851 - MIR SINE MIR -48 214 88 870 206 11 6 chr9 109982593 109982768 -32288676 - MER5A DNA MER1_type 0 189 14 2264 114 0 0 chr9 109982804 109983112 -32288332 + AluSq SINE Alu 1 308 -5 257 290 20 20 chr9 109983655 109983755 -32287689 + L1MC4 LINE L1 7927 8026 -16 184 300 67 131 chr9 109983825 109984122 -32287322 - L2 LINE L2 -67 3205 2928 1429 148 9 9 chr9 109984126 109984342 -32287102 + AluSx SINE Alu 1 216 -96 309 109 0 0 chr9 109984344 109984390 -32287054 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 850 139 21 8 chr9 109984394 109984638 -32286806 + GA-rich Low_complexity Low_complexity 1 247 0 409 191 0 22 chr9 109985805 109985894 -32285550 - L1MC5 LINE L1 -51 7910 7824 336 262 59 13 chr9 109986471 109986685 -32284759 + L1M3 LINE L1 5611 5837 -298 278 180 66 0 chr9 109986701 109986762 -32284682 + L1MC5 LINE L1 7454 7518 -443 968 155 6 43 chr9 109986768 109986929 -32284515 - AluJb SINE Alu -21 291 137 334 185 179 29 chr9 109986933 109987106 -32284338 + L1MC5 LINE L1 7521 7719 -242 2155 124 3 0 chr9 109987361 109987652 -32283792 - AluSx SINE Alu -20 292 1 180 0 0 0 chr9 109988037 109988057 -32283387 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1663 179 14 0 chr9 109988250 109988561 -32282883 - AluJo SINE Alu 0 315 1 942 171 61 35 chr9 109989377 109989605 -32281839 - MER63 DNA MER1_type -33 1028 795 1247 128 97 13 chr9 109989635 109989862 -32281582 - MER63 DNA MER1_type -815 246 1 2264 100 10 0 chr9 109990512 109990811 -32280633 - AluSc SINE Alu -7 302 1 346 276 130 16 chr9 109990960 109991083 -32280361 - MIR SINE MIR -90 172 36 224 215 38 51 chr9 109991095 109991174 -32280270 + CT-rich Low_complexity Low_complexity 3 80 0 500 193 31 3 chr9 109991683 109991838 -32279606 + MER106A DNA MER1_type 1 214 -22 197 314 0 0 chr9 109991866 109991917 -32279527 + MIR SINE MIR 200 250 -12 2307 87 3 10 chr9 109992357 109992667 -32278777 - AluSc SINE Alu -1 308 1 22 43 0 21 chr9 109992735 109992768 -32278676 + AT_rich Low_complexity Low_complexity 1 34 -12 4033 132 16 7 chr9 109992768 109993373 -32278071 + L1PA13 LINE L1 5546 6156 -7 22 43 0 21 chr9 109993373 109993386 -32278058 + AT_rich Low_complexity Low_complexity 34 46 0 305 319 35 28 chr9 109993389 109993533 -32277911 - MIR SINE MIR -54 208 64 1018 106 0 0 chr9 109994831 109994963 -32276481 + AluY SINE Alu 1 132 -179 833 224 72 30 chr9 109995920 109996157 -32275287 + L1ME2 LINE L1 5917 6163 -1 507 299 21 16 chr9 109996438 109996625 -32274819 - MER5A DNA MER1_type 0 189 2 313 186 174 50 chr9 109997192 109997353 -32274091 - L1ME4a LINE L1 -3 6118 5938 252 282 65 83 chr9 109997467 109997603 -32273841 + L2 LINE L2 3102 3235 -78 1994 103 44 0 chr9 109997603 109997898 -32273546 + AluSx SINE Alu 1 307 0 252 282 65 83 chr9 109997898 109997976 -32273468 + L2 LINE L2 3235 3313 0 345 62 0 0 chr9 109998165 109998213 -32273231 + (T)n Simple_repeat Simple_repeat 1 48 0 6382 63 43 42 chr9 109998214 109999166 -32272278 - SVA Other Other -1 1385 433 711 67 8 37 chr9 109999179 109999313 -32272131 - SVA Other Other -592 794 665 5467 86 26 74 chr9 109999330 110000648 -32270796 - SVA Other Other -518 868 57 606 49 0 0 chr9 110000648 110000730 -32270714 + (GGGAGA)n Simple_repeat Simple_repeat 1 82 0 617 338 11 6 chr9 110000751 110000992 -32270452 - L1ME LINE L1 -445 5676 5436 1581 84 207 20 chr9 110001130 110001381 -32270063 - AluSx SINE Alu -3 299 2 323 352 62 6 chr9 110001402 110001578 -32269866 - L1ME LINE L1 -1023 5123 4938 793 188 0 0 chr9 110001849 110001982 -32269462 - AluJb SINE Alu -1 311 179 2077 125 0 0 chr9 110001991 110002301 -32269143 - AluSx SINE Alu 0 312 3 750 281 86 53 chr9 110003326 110003839 -32267605 - MLT1F LTR MaLR -12 530 1 2474 183 40 14 chr9 110004414 110004924 -32266520 + L1MB4 LINE L1 4954 5488 -695 2020 101 4 0 chr9 110004924 110005182 -32266262 - AluSx SINE Alu -26 286 28 2474 183 40 14 chr9 110005182 110005414 -32266030 + L1MB4 LINE L1 5488 5713 -470 186 43 0 0 chr9 110005415 110005438 -32266006 + (CAT)n Simple_repeat Simple_repeat 2 24 0 771 201 0 8 chr9 110005490 110005624 -32265820 - FLAM_A SINE Alu 0 133 1 1843 145 44 6 chr9 110005624 110005937 -32265507 + L1MB4 LINE L1 5701 6025 -155 262 188 62 0 chr9 110005935 110005999 -32265445 - L1MB3 LINE L1 -78 6105 6038 * 602 204 0 0 chr9 110006017 110006149 -32265295 + L1MB3 LINE L1 6049 6180 -3 445 169 0 0 chr9 110006178 110006267 -32265177 + L1MB4 LINE L1 6092 6180 0 543 241 113 47 chr9 110006316 110006590 -32264854 + L2 LINE L2 3022 3313 0 1450 267 80 51 chr9 110006650 110006771 -32264673 - L1M1 LINE L1 -4006 3559 3443 2055 118 0 10 chr9 110006771 110007059 -32264385 + AluSc SINE Alu 4 288 -21 1450 267 80 51 chr9 110007059 110007727 -32263717 - L1M1 LINE L1 -4122 3443 2747 307 332 32 10 chr9 110007784 110008007 -32263437 + L1ME LINE L1 5455 5680 -441 268 264 69 0 chr9 110008051 110008138 -32263306 + MIR SINE MIR 160 252 -10 2334 104 3 3 chr9 110008317 110008626 -32262818 - AluSg SINE Alu -1 309 1 1194 186 38 0 chr9 110008796 110009006 -32262438 - AluJb SINE Alu -12 300 83 1931 211 58 14 chr9 110009046 110009491 -32261953 - MLT1C LTR MaLR -2 465 1 2482 90 3 0 chr9 110010075 110010385 -32261059 + AluSp SINE Alu 1 311 -2 2531 136 31 21 chr9 110010463 110010881 -32260563 + Tigger2a DNA MER2_type 3 424 -10 2100 94 57 17 chr9 110011040 110011338 -32260106 - AluSg SINE Alu 0 310 1 181 255 94 94 chr9 110012492 110012747 -32258697 - L2 LINE L2 -87 3226 2972 686 237 58 58 chr9 110012932 110013206 -32258238 + LTR16B LTR ERVL 191 464 0 30 0 0 0 chr9 110013304 110013334 -32258110 + AT_rich Low_complexity Low_complexity 1 30 0 3593 44 0 177 chr9 110013335 110014265 -32257179 + SVA Other Other 233 866 -520 6596 62 15 46 chr9 110014282 110015285 -32256159 + SVA Other Other 433 1386 0 180 0 0 0 chr9 110015305 110015325 -32256119 + (A)n Simple_repeat Simple_repeat 1 20 0 1777 135 0 32 chr9 110015325 110015633 -32255811 - AluJb SINE Alu 0 311 13 1752 135 53 3 chr9 110015906 110016188 -32255256 + MER73 LTR ERVL 4 299 -345 2026 159 3 50 chr9 110016255 110016525 -32254919 + MER73 LTR ERVL 276 524 -120 1795 158 16 29 chr9 110016525 110016835 -32254609 - AluJo SINE Alu -6 306 1 2026 159 3 50 chr9 110016835 110016948 -32254496 + MER73 LTR ERVL 524 641 -3 267 278 0 0 chr9 110017039 110017093 -32254351 + L2 LINE L2 3215 3268 -4 1675 243 80 0 chr9 110017194 110017634 -32253810 + L2 LINE L2 2473 2947 -367 198 356 77 19 chr9 110017676 110017780 -32253664 + L2 LINE L2 2943 3052 -261 1897 211 47 27 chr9 110017845 110018224 -32253220 + MLT1C LTR MaLR 11 402 -65 2312 94 3 0 chr9 110018224 110018521 -32252923 - AluSp SINE Alu -15 298 1 1897 211 47 27 chr9 110018521 110018587 -32252857 + MLT1C LTR MaLR 402 465 -2 284 211 92 84 chr9 110019015 110019157 -32252287 + L2 LINE L2 3109 3251 -62 2909 131 70 62 chr9 110019566 110019841 -32251603 + Tigger3b DNA MER2_type 1 272 -2756 1871 134 14 31 chr9 110019841 110020132 -32251312 - AluJo SINE Alu -26 286 1 1781 167 10 0 chr9 110020142 110020430 -32251014 - AluJb SINE Alu -21 291 1 2909 131 70 62 chr9 110020430 110020710 -32250734 + Tigger3b DNA MER2_type 280 572 -659 1016 199 0 0 chr9 110020712 110020898 -32250546 + AluJo SINE Alu 120 305 -7 3409 127 88 15 chr9 110020898 110021490 -32249954 + Tigger3b DNA MER2_type 597 1231 0 2187 102 24 0 chr9 110021506 110021799 -32249645 - AluSg SINE Alu -10 300 1 229 321 116 0 chr9 110022122 110022234 -32249210 - L2 LINE L2 -3 3269 3145 297 264 77 0 chr9 110022236 110022327 -32249117 - L2 LINE L2 -6 3266 3169 2267 89 3 10 chr9 110022361 110022663 -32248781 + AluSg SINE Alu 1 300 -10 1237 282 92 14 chr9 110022696 110023234 -32248210 - L2 LINE L2 -256 3057 2479 1412 192 26 23 chr9 110023512 110023820 -32247624 + AluJb SINE Alu 1 309 -3 471 275 8 25 chr9 110023843 110023963 -32247481 + MIR SINE MIR 22 139 -123 522 312 120 46 chr9 110024095 110024579 -32246865 - L2 LINE L2 0 3313 2666 228 286 54 0 chr9 110024563 110024619 -32246825 - MIR SINE MIR -181 81 23 * 23 68 0 0 chr9 110025529 110025573 -32245871 + GC_rich Low_complexity Low_complexity 1 44 0 364 271 166 7 chr9 110026592 110026743 -32244701 + MIR SINE MIR 16 190 -72 21 0 0 0 chr9 110027545 110027566 -32243878 + AT_rich Low_complexity Low_complexity 1 21 0 2418 76 0 10 chr9 110028620 110028922 -32242522 + AluY SINE Alu 1 299 -12 2139 94 4 0 chr9 110029411 110029688 -32241756 + AluSq SINE Alu 30 307 -6 216 184 20 20 chr9 110029974 110030023 -32241421 + L2 LINE L2 3265 3313 0 506 295 94 40 chr9 110030082 110030266 -32241178 - L2 LINE L2 0 3313 3140 1598 141 0 8 chr9 110030266 110030521 -32240923 - AluSx SINE Alu -3 309 57 506 295 94 40 chr9 110030521 110030742 -32240702 - L2 LINE L2 -173 3140 2837 788 189 0 6 chr9 110030854 110031023 -32240421 + CT-rich Low_complexity Low_complexity 1 168 0 1785 160 3 3 chr9 110031028 110031315 -32240129 - AluJo SINE Alu -25 287 1 468 243 42 21 chr9 110031356 110031500 -32239944 - L2 LINE L2 -648 2666 2520 325 200 167 53 chr9 110031502 110031652 -32239792 + MIR SINE MIR 63 229 -33 * 966 251 191 89 chr9 110031651 110032344 -32239100 + L2 LINE L2 1080 1842 -1472 412 256 41 36 chr9 110034004 110034199 -32237245 - L1ME LINE L1 -313 5808 5613 2317 97 7 3 chr9 110034228 110034528 -32236916 + AluSc SINE Alu 1 301 -8 516 232 79 53 chr9 110034594 110034703 -32236741 + MIR SINE MIR 46 164 -98 1929 237 101 24 chr9 110034703 110035206 -32236238 - MLT1F LTR MaLR 0 542 1 516 232 79 53 chr9 110035206 110035286 -32236158 + MIR SINE MIR 164 240 -22 185 289 0 0 chr9 110035252 110035290 -32236154 + L2 LINE L2 3211 3248 -24 * 1040 220 0 18 chr9 110035622 110035845 -32235599 - AluJo SINE Alu -24 288 70 1634 138 123 8 chr9 110038390 110038658 -32232786 - AluSg1 SINE Alu -10 299 1 2193 108 3 19 chr9 110038661 110038975 -32232469 - AluSc SINE Alu 0 309 1 22 35 0 0 chr9 110038977 110039006 -32232438 + AT_rich Low_complexity Low_complexity 1 29 0 2131 117 10 3 chr9 110039161 110039461 -32231983 - AluSq SINE Alu -11 302 1 180 284 0 108 chr9 110039777 110039851 -32231593 - L2 LINE L2 0 3313 3248 662 187 100 116 chr9 110040041 110040131 -32231313 - Charlie1 DNA MER1_type -1 2760 2670 1705 158 19 71 chr9 110040131 110040454 -32230990 - AluSx SINE Alu -6 306 1 662 187 100 116 chr9 110040454 110040673 -32230771 - Charlie1 DNA MER1_type -91 2670 2456 280 333 37 9 chr9 110041264 110041372 -32230072 - MIR3 SINE MIR -11 197 87 505 188 0 10 chr9 110041387 110041483 -32229961 - MER5B DNA MER1_type -4 174 80 1739 175 3 10 chr9 110043361 110043664 -32227780 - AluJo SINE Alu -11 301 1 27 73 0 0 chr9 110044132 110044187 -32227257 + AT_rich Low_complexity Low_complexity 1 55 0 2549 61 0 3 chr9 110044467 110044779 -32226665 - AluY SINE Alu 0 311 1 27 0 0 0 chr9 110044836 110044863 -32226581 + AT_rich Low_complexity Low_complexity 1 27 0 448 155 126 0 chr9 110045334 110045437 -32226007 - L1MB3 LINE L1 0 6183 6068 * 804 154 0 31 chr9 110045416 110045573 -32225871 - L1MB3 LINE L1 -255 5928 5793 2287 129 109 27 chr9 110046608 110046830 -32224614 - Tigger2 DNA MER2_type 0 2718 2516 1532 156 13 57 chr9 110046830 110047145 -32224299 + AluJb SINE Alu 1 301 -11 2287 129 109 27 chr9 110047145 110047385 -32224059 - Tigger2 DNA MER2_type -202 2516 2 780 191 0 15 chr9 110047651 110047782 -32223662 + FLAM_C SINE Alu 1 129 -4 306 67 0 0 chr9 110047869 110047914 -32223530 + (TA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr9 110047917 110047938 -32223506 + AT_rich Low_complexity Low_complexity 1 21 0 2411 90 0 0 chr9 110050042 110050342 -32221102 - AluSx SINE Alu -12 300 1 547 186 85 62 chr9 110050945 110051122 -32220322 + MER5A DNA MER1_type 9 189 0 2632 47 0 0 chr9 110051473 110051774 -32219670 + AluY SINE Alu 1 301 -10 356 291 106 0 chr9 110052543 110052684 -32218760 - MIR SINE MIR -15 247 92 22 35 0 0 chr9 110053241 110053270 -32218174 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr9 110053450 110053479 -32217965 + AT_rich Low_complexity Low_complexity 1 29 0 290 202 111 40 chr9 110054486 110054585 -32216859 - LTR33A LTR ERVL -1 522 417 22 0 0 0 chr9 110054866 110054888 -32216556 + AT_rich Low_complexity Low_complexity 1 22 0 2110 112 16 3 chr9 110055044 110055347 -32216097 - AluSg SINE Alu -3 307 1 324 229 9 38 chr9 110055443 110055548 -32215896 + L2 LINE L2 2209 2310 -1004 339 125 42 0 chr9 110055718 110055790 -32215654 + CT-rich Low_complexity Low_complexity 1 75 0 4406 147 69 24 chr9 110056019 110057232 -32214212 - L1PB4 LINE L1 -1 6155 4720 257 0 30 0 chr9 110057323 110057356 -32214088 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2065 107 4 0 chr9 110057364 110057636 -32213808 - AluSx SINE Alu -39 273 1 337 337 68 10 chr9 110057757 110057839 -32213605 + MIR SINE MIR 6 82 -180 2255 82 10 10 chr9 110057839 110058133 -32213311 - AluSc SINE Alu -15 294 1 337 337 68 10 chr9 110058133 110058255 -32213189 + MIR SINE MIR 82 222 -40 23 0 0 0 chr9 110058381 110058404 -32213040 + AT_rich Low_complexity Low_complexity 1 23 0 199 284 27 0 chr9 110058789 110058863 -32212581 - L2 LINE L2 -371 2943 2868 249 33 0 0 chr9 110058915 110058945 -32212499 + (TG)n Simple_repeat Simple_repeat 2 31 0 377 289 140 54 chr9 110058952 110059267 -32212177 - L2 LINE L2 -622 2692 2351 1646 215 78 64 chr9 110059933 110060431 -32211013 - MLT1D LTR MaLR 0 505 1 2475 80 3 3 chr9 110060942 110061253 -32210191 - AluY SINE Alu 0 311 1 333 209 66 22 chr9 110061283 110061374 -32210070 + Charlie8 DNA MER1_type 42 136 -2281 391 250 48 0 chr9 110063495 110063579 -32207865 - MER3 DNA MER1_type -121 88 1 416 242 94 0 chr9 110066053 110066181 -32205263 - MER103 DNA DNA -13 153 14 291 133 48 96 chr9 110066834 110066869 -32204575 - Charlie5 DNA MER1_type -2515 109 74 2436 84 3 0 chr9 110066869 110067165 -32204279 + AluSx SINE Alu 14 310 -2 291 133 48 96 chr9 110067165 110067212 -32204232 - Charlie5 DNA MER1_type -2550 74 31 5671 203 84 81 chr9 110067224 110068110 -32203334 - L1M4 LINE L1 -1653 4729 3847 1802 33 5 9 chr9 110068110 110068321 -32203123 + AluY SINE Alu 90 299 -12 5671 203 84 81 chr9 110068321 110068539 -32202905 - L1M4 LINE L1 -2535 3847 3631 2479 67 0 19 chr9 110068539 110068854 -32202590 - AluY SINE Alu -2 309 1 5671 203 84 81 chr9 110068854 110070039 -32201405 - L1M4 LINE L1 -2751 3631 2433 675 164 0 39 chr9 110070181 110070309 -32201135 - MER1B DNA MER1_type 0 339 217 1518 143 4 20 chr9 110070323 110070589 -32200855 - Charlie3 DNA MER1_type -63 2647 52 449 231 0 0 chr9 110070587 110070678 -32200766 - Charlie3 DNA MER1_type -2615 95 5 * 1787 134 0 0 chr9 110073131 110073378 -32198066 + AluSx SINE Alu 1 247 -65 1128 207 108 22 chr9 110074515 110074829 -32196615 + MER58B DNA MER1_type 1 341 0 1813 195 106 34 chr9 110076010 110076463 -32194981 - MLT2B2 LTR ERVL -6 469 1 2047 197 84 145 chr9 110077184 110077880 -32193564 - L1MC4 LINE L1 -286 7522 6786 1022 71 0 8 chr9 110077880 110078006 -32193438 - AluSq/x SINE Alu -188 125 1 2047 197 84 145 chr9 110078006 110078354 -32193090 - L1MC4 LINE L1 -1022 6786 6556 2008 130 7 3 chr9 110078354 110078647 -32192797 + AluJb SINE Alu 1 294 -18 2047 197 84 145 chr9 110078647 110078740 -32192704 - L1MC4 LINE L1 -1252 6556 6459 269 283 106 9 chr9 110079912 110080025 -32191419 + MIR SINE MIR 69 192 -70 463 316 198 15 chr9 110080535 110081066 -32190378 - L3 LINE CR1 -3 1574 947 199 309 165 0 chr9 110081285 110081382 -32190062 - MIR SINE MIR -121 141 29 1907 147 0 23 chr9 110081586 110081886 -32189558 - AluSx SINE Alu -1 311 19 705 69 29 0 chr9 110081912 110082014 -32189430 + AluSp SINE Alu 3 107 -206 1646 109 4 0 chr9 110082116 110082346 -32189098 + AluSg/x SINE Alu 74 304 -6 301 154 77 15 chr9 110082346 110082411 -32189033 + Charlie1 DNA MER1_type 2693 2761 0 1533 42 67 5 chr9 110082805 110082998 -32188446 + AluSg SINE Alu 1 205 -105 2146 73 4 0 chr9 110083656 110083915 -32187529 + AluSp SINE Alu 3 262 -51 279 0 0 0 chr9 110083915 110083946 -32187498 + (CA)n Simple_repeat Simple_repeat 2 32 0 220 330 50 0 chr9 110083953 110084053 -32187391 - MIR SINE MIR -125 137 33 300 235 152 0 chr9 110085112 110085244 -32186200 + L2 LINE L2 3162 3313 0 2361 93 3 3 chr9 110085376 110085688 -32185756 - AluSp SINE Alu -1 312 1 181 284 90 0 chr9 110086614 110086681 -32184763 - L2 LINE L2 0 3313 3241 329 327 65 23 chr9 110086803 110087020 -32184424 - L2 LINE L2 -215 3057 2832 280 228 79 53 chr9 110087782 110087896 -32183548 + MIR SINE MIR 48 164 -98 2362 100 7 0 chr9 110088051 110088330 -32183114 + AluSx SINE Alu 1 284 -28 216 0 0 0 chr9 110088330 110088354 -32183090 + (CA)n Simple_repeat Simple_repeat 1 24 0 2362 100 7 0 chr9 110088354 110088383 -32183061 + AluSx SINE Alu 284 311 -1 2112 108 0 7 chr9 110088576 110088854 -32182590 + AluSx SINE Alu 6 281 -31 582 75 0 0 chr9 110088854 110088934 -32182510 + (CAAG)n Simple_repeat Simple_repeat 1 80 0 216 0 0 0 chr9 110088933 110088957 -32182487 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 * 330 132 0 0 chr9 110089323 110089376 -32182068 + (GGGA)n Simple_repeat Simple_repeat 2 54 0 416 159 9 35 chr9 110089393 110089506 -32181938 + GA-rich Low_complexity Low_complexity 1 110 0 2611 54 0 6 chr9 110089511 110089824 -32181620 + AluY SINE Alu 1 311 0 636 306 86 44 chr9 110090020 110090425 -32181019 - HERV16 LTR ERVL -4574 422 1 279 277 243 10 chr9 110090425 110090627 -32180817 - LTR16A LTR ERVL 0 450 202 926 191 151 4 chr9 110091005 110091230 -32180214 - L1MD3 LINE L1 -9 7986 7729 391 225 127 42 chr9 110091745 110091887 -32179557 + MIR SINE MIR 109 262 0 1424 142 64 131 chr9 110091999 110092372 -32179072 - MER7A DNA MER2_type 0 346 1 216 318 31 16 chr9 110092487 110092616 -32178828 - MIR SINE MIR -14 248 118 296 286 134 0 chr9 110092655 110092774 -32178670 - L2 LINE L2 -6 3307 3173 842 244 122 80 chr9 110092797 110093298 -32178146 + LTR33A LTR ERVL 1 522 -1 495 323 105 19 chr9 110093299 110093556 -32177888 - L2 LINE L2 -146 3167 2889 2025 137 0 17 chr9 110093697 110093997 -32177447 - AluSx SINE Alu -17 295 1 6415 101 26 3 chr9 110094694 110096408 -32175036 - L1PA14 LINE L1 -2 6159 4433 290 232 42 11 chr9 110096641 110096736 -32174708 - MIR3 SINE MIR -13 195 98 201 280 0 54 chr9 110097429 110097522 -32173922 - MIR SINE MIR -34 228 141 1499 147 23 70 chr9 110097522 110097657 -32173787 + MLT2D LTR ERVL 3 143 -271 1716 184 0 19 chr9 110097657 110097973 -32173471 + AluJo SINE Alu 1 310 -2 1499 147 23 70 chr9 110097973 110098137 -32173307 + MLT2D LTR ERVL 143 288 -126 319 262 140 28 chr9 110098139 110098246 -32173198 - MIR SINE MIR -115 147 29 1552 186 40 45 chr9 110098267 110098433 -32173011 + MLT1A2 LTR MaLR 1 166 -208 2282 121 3 0 chr9 110098433 110098740 -32172704 + AluSq SINE Alu 1 308 -5 1552 186 40 45 chr9 110098740 110098761 -32172683 + MLT1A2 LTR MaLR 166 186 -188 441 36 0 0 chr9 110098761 110098816 -32172628 + (TC)n Simple_repeat Simple_repeat 1 55 0 1552 186 40 45 chr9 110098816 110099003 -32172441 + MLT1A2 LTR MaLR 186 374 0 189 283 17 0 chr9 110099042 110099102 -32172342 + L2 LINE L2 3251 3311 -2 874 148 0 0 chr9 110100019 110100141 -32171303 - FLAM_C SINE Alu -21 122 1 2256 101 7 0 chr9 110100169 110100466 -32170978 + AluSx SINE Alu 1 299 -13 469 194 65 0 chr9 110100472 110100565 -32170879 - MER45A DNA AcHobo -22 156 58 250 296 95 20 chr9 110100632 110100784 -32170660 + MIR SINE MIR 7 164 -57 2328 177 64 39 chr9 110102835 110103320 -32168124 - MLT1D LTR MaLR -8 497 1 2185 130 0 0 chr9 110103740 110104041 -32167403 - AluSx SINE Alu -11 301 1 2225 107 3 0 chr9 110104703 110104994 -32166450 - AluSg SINE Alu -18 292 1 259 340 80 25 chr9 110105113 110105275 -32166169 - MIR SINE MIR -81 181 11 1683 146 34 24 chr9 110105406 110105537 -32165907 + AluJo SINE Alu 5 133 -179 2264 129 0 0 chr9 110105537 110105846 -32165598 + AluSx SINE Alu 1 309 -3 1683 146 34 24 chr9 110105846 110106009 -32165435 + AluJo SINE Alu 133 302 -10 198 265 73 0 chr9 110106441 110106509 -32164935 + MIR3 SINE MIR 93 165 -43 231 250 0 0 chr9 110106782 110106831 -32164613 + (CAT)n Simple_repeat Simple_repeat 2 53 -4 2021 107 55 3 chr9 110106831 110107122 -32164322 - AluSx SINE Alu -6 306 1 231 250 0 0 chr9 110107122 110107128 -32164316 + (CAT)n Simple_repeat Simple_repeat 52 57 0 182 31 0 62 chr9 110107168 110107200 -32164244 + (TAAG)n Simple_repeat Simple_repeat 3 32 0 1520 99 54 18 chr9 110107730 110107775 -32163669 + AluSc SINE Alu 80 122 -187 2463 81 0 0 chr9 110107775 110108083 -32163361 + AluY SINE Alu 1 308 -3 1520 99 54 18 chr9 110108083 110108259 -32163185 + AluSc SINE Alu 122 309 0 258 246 15 46 chr9 110108280 110108410 -32163034 + L1ME4a LINE L1 5993 6118 -3 2163 116 7 13 chr9 110108524 110108826 -32162618 + AluSx SINE Alu 1 300 -12 2179 103 3 30 chr9 110109694 110109996 -32161448 - AluSx SINE Alu -18 294 1 201 211 0 0 chr9 110110155 110110207 -32161237 + (TTAGGG)n Simple_repeat Simple_repeat 6 57 0 280 284 173 0 chr9 110110678 110110840 -32160604 - MIR SINE MIR -51 211 22 256 261 43 0 chr9 110111000 110111069 -32160375 + MER21B LTR ERV1 15 86 -777 2405 246 66 31 chr9 110111097 110111836 -32159608 + MER21B LTR ERV1 19 783 -80 1258 237 67 6 chr9 110112016 110112375 -32159069 + Zaphod DNA AcHobo 3651 4031 0 22 70 0 0 chr9 110112431 110112474 -32158970 + AT_rich Low_complexity Low_complexity 1 43 0 2043 124 13 0 chr9 110112490 110112788 -32158656 + AluSx SINE Alu 1 302 -10 2074 125 3 0 chr9 110113407 110113703 -32157741 + AluJo SINE Alu 1 297 -15 2352 62 3 0 chr9 110113767 110114071 -32157373 + AluY SINE Alu 1 305 -6 2061 132 0 0 chr9 110114353 110114657 -32156787 + AluSx SINE Alu 4 307 -5 364 174 211 28 chr9 110115009 110115118 -32156326 - L2 LINE L2 -7 3306 3178 757 228 43 22 chr9 110115120 110115304 -32156140 + L1MEc LINE L1 27 214 -6182 1918 203 37 37 chr9 110115309 110115730 -32155714 + L1MEc LINE L1 1726 2149 -4247 2030 98 7 19 chr9 110115730 110116037 -32155407 + AluSx SINE Alu 1 303 -9 1918 203 37 37 chr9 110116037 110116156 -32155288 + L1MEc LINE L1 2148 2266 -4130 3947 268 104 16 chr9 110116169 110117141 -32154303 - L2 LINE L2 -148 3165 2000 1761 142 6 38 chr9 110117141 110117457 -32153987 + AluJb SINE Alu 1 306 -6 3947 268 104 16 chr9 110117457 110117958 -32153486 - L2 LINE L2 -1313 2000 1545 566 316 106 25 chr9 110118385 110118914 -32152530 - L2 LINE L2 -1199 2115 1544 3734 129 29 57 chr9 110119243 110119512 -32151932 + L1MA7 LINE L1 5559 5834 -457 2072 104 0 0 chr9 110119512 110119813 -32151631 + AluSg SINE Alu 1 301 0 3734 129 29 57 chr9 110119813 110120264 -32151180 + L1MA7 LINE L1 5834 6260 -31 24 0 0 0 chr9 110120340 110120364 -32151080 + AT_rich Low_complexity Low_complexity 1 24 0 182 105 26 0 chr9 110120395 110120433 -32151011 + A-rich Low_complexity Low_complexity 5 43 0 189 0 0 0 chr9 110120638 110120659 -32150785 + (A)n Simple_repeat Simple_repeat 1 21 0 1405 125 24 113 chr9 110120762 110121090 -32150354 + AluYb8 SINE Alu 1 299 -19 2118 114 7 3 chr9 110121101 110121409 -32150035 - AluSc SINE Alu 0 309 1 531 227 7 71 chr9 110122012 110122078 -32149366 + MER45A DNA AcHobo 47 101 -1480 1623 161 6 26 chr9 110122078 110122389 -32149055 - AluJb SINE Alu -7 305 1 531 227 7 71 chr9 110122389 110122463 -32148981 + MER45A DNA AcHobo 101 178 0 1983 128 0 0 chr9 110122560 110122861 -32148583 + AluSx SINE Alu 1 301 0 199 173 96 39 chr9 110123289 110123341 -32148103 - L2 LINE L2 -2 3311 3257 1667 170 0 35 chr9 110123498 110123810 -32147634 + AluJo SINE Alu 1 301 -11 2162 115 0 0 chr9 110123931 110124236 -32147208 - AluSx SINE Alu -6 306 2 707 139 37 0 chr9 110124245 110124353 -32147091 - FLAM_A SINE Alu -11 131 20 301 275 107 81 chr9 110124452 110124876 -32146568 - L1ME4a LINE L1 -125 5996 5555 2201 89 7 0 chr9 110124876 110125168 -32146276 + AluSx SINE Alu 1 294 -18 301 275 107 81 chr9 110125168 110125248 -32146196 - L1ME4a LINE L1 -566 5555 5479 568 213 43 87 chr9 110125306 110125513 -32145931 - MIR SINE MIR -12 250 53 625 273 59 16 chr9 110125520 110125707 -32145737 + MIR SINE MIR 68 262 0 1692 159 28 0 chr9 110125902 110126191 -32145253 - AluJo SINE Alu -15 297 1 2567 315 83 23 chr9 110126405 110127692 -32143752 - L2 LINE L2 0 3313 1925 2230 100 3 6 chr9 110127692 110128003 -32143441 + AluSg SINE Alu 1 310 0 2567 315 83 23 chr9 110128003 110128102 -32143342 - L2 LINE L2 -1388 1925 1833 391 293 0 19 chr9 110128059 110128165 -32143279 + MIR SINE MIR 17 120 -142 * 301 228 43 99 chr9 110129038 110129200 -32142244 - MER117 DNA MER1_type 0 197 45 2130 99 0 0 chr9 110129325 110129633 -32141811 - AluSx SINE Alu 0 308 1 470 243 19 0 chr9 110129783 110129890 -32141554 - MER5A DNA MER1_type -77 112 4 327 164 0 0 chr9 110130326 110130387 -32141057 + CT-rich Low_complexity Low_complexity 4 64 0 792 119 27 2 chr9 110130394 110130628 -32140816 - AluJb SINE Alu -23 289 1 374 302 101 20 chr9 110130933 110131070 -32140374 + MIR SINE MIR 36 161 -101 1783 134 4 0 chr9 110131070 110131332 -32140112 + AluSx SINE Alu 1 263 -49 191 61 30 0 chr9 110131332 110131365 -32140079 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 210 191 0 0 chr9 110132271 110132313 -32139131 + CT-rich Low_complexity Low_complexity 3 44 0 452 318 109 45 chr9 110132536 110132957 -32138487 + L2 LINE L2 2825 3272 0 485 288 11 42 chr9 110132964 110133179 -32138265 + MIR SINE MIR 14 216 -46 1788 138 7 17 chr9 110133582 110133878 -32137566 - AluSx SINE Alu -19 293 1 184 268 0 0 chr9 110133893 110133934 -32137510 - MIR3 SINE MIR -32 176 136 363 288 17 25 chr9 110134406 110134524 -32136920 + MIR SINE MIR 30 146 -62 352 339 55 59 chr9 110134907 110135450 -32135994 + L2 LINE L2 2149 2689 -625 605 253 60 0 chr9 110135467 110135617 -32135827 - MER5B DNA MER1_type -19 159 1 237 167 62 0 chr9 110135722 110135770 -32135674 + MER5B DNA MER1_type 128 178 0 211 213 21 0 chr9 110135813 110135860 -32135584 - L2 LINE L2 -665 2649 2602 2238 96 3 0 chr9 110135912 110136213 -32135231 + AluSx SINE Alu 1 302 -10 192 170 0 94 chr9 110136759 110136812 -32134632 - MIR SINE MIR -145 63 16 2274 99 3 3 chr9 110137071 110137383 -32134061 + AluSq SINE Alu 1 312 -1 255 300 69 22 chr9 110137415 110137603 -32133841 + MIR SINE MIR 64 262 0 2279 106 0 0 chr9 110137932 110138243 -32133201 + AluSx SINE Alu 1 311 -1 499 236 9 0 chr9 110138370 110138480 -32132964 - Charlie8 DNA MER1_type -2195 222 112 1022 142 24 0 chr9 110138496 110138665 -32132779 - AluSp SINE Alu -4 309 137 2218 79 0 13 chr9 110138807 110139110 -32132334 + AluSx SINE Alu 1 299 -13 195 234 0 43 chr9 110139217 110139264 -32132180 + MER5B DNA MER1_type 6 50 -128 1552 168 13 27 chr9 110139282 110139580 -32131864 - AluJo SINE Alu -16 296 3 625 254 0 0 chr9 110139581 110139719 -32131725 + MER5B DNA MER1_type 36 173 -5 211 273 18 0 chr9 110139740 110139795 -32131649 + MER5A DNA MER1_type 9 64 -125 199 382 56 0 chr9 110139888 110139977 -32131467 - MER5A DNA MER1_type -87 102 9 1613 209 37 6 chr9 110139998 110140324 -32131120 + MER58B DNA MER1_type 6 341 0 322 204 34 129 chr9 110140330 110140477 -32130967 + MIR SINE MIR 33 165 -97 1775 120 0 8 chr9 110140708 110140967 -32130477 + AluSx SINE Alu 1 257 -55 566 263 19 62 chr9 110141107 110141316 -32130128 + LTR41 LTR ERVL 1 200 -573 2056 125 0 3 chr9 110141581 110141877 -32129567 - AluSx SINE Alu -17 295 1 369 242 8 40 chr9 110141946 110142070 -32129374 + LTR41 LTR ERVL 583 702 -71 278 192 0 0 chr9 110142083 110142135 -32129309 + L1MB3 LINE L1 5920 5971 -209 1772 149 10 7 chr9 110142136 110142431 -32129013 + AluJb SINE Alu 1 296 -16 201 263 0 0 chr9 110142453 110142510 -32128934 + A-rich Low_complexity Low_complexity 1 57 0 1087 139 4 112 chr9 110142512 110142704 -32128740 + L1MB3 LINE L1 5953 6111 -72 524 224 32 8 chr9 110142704 110142829 -32128615 + FLAM_C SINE Alu 2 129 -4 1087 139 4 112 chr9 110142829 110142895 -32128549 + L1MB3 LINE L1 6111 6183 0 2100 110 10 3 chr9 110143030 110143339 -32128105 - AluSp SINE Alu -2 311 1 2572 113 16 71 chr9 110143992 110144248 -32127196 - MSTA LTR MaLR 0 428 206 1925 126 36 0 chr9 110144248 110144549 -32126895 + AluSq SINE Alu 1 312 -1 2572 113 16 71 chr9 110144549 110144745 -32126699 - MSTA LTR MaLR -222 206 1 506 252 53 20 chr9 110144788 110144939 -32126505 + MER117 DNA MER1_type 42 197 0 1544 143 62 0 chr9 110145004 110145248 -32126196 + AluJo SINE Alu 1 259 -53 240 35 0 0 chr9 110145958 110145987 -32125457 + (TC)n Simple_repeat Simple_repeat 2 30 0 728 252 67 54 chr9 110146611 110146924 -32124520 + L1MC5 LINE L1 7214 7530 -431 1507 196 3 34 chr9 110147438 110147759 -32123685 - AluJo SINE Alu -1 311 1 511 230 59 89 chr9 110148089 110148222 -32123222 + MLT1J LTR MaLR 231 354 -157 1812 161 0 0 chr9 110148222 110148520 -32122924 - AluJb SINE Alu -14 298 1 511 230 59 89 chr9 110148520 110148656 -32122788 + MLT1J LTR MaLR 354 492 -19 1976 135 0 0 chr9 110148863 110149144 -32122300 + AluSx SINE Alu 1 281 -31 2502 41 0 28 chr9 110149145 110149465 -32121979 + AluY SINE Alu 1 311 0 413 311 63 46 chr9 110149661 110149899 -32121545 + MIR SINE MIR 10 251 -11 535 335 45 5 chr9 110149973 110150197 -32121247 - L3 LINE CR1 -14 1563 1331 541 231 151 91 chr9 110150419 110150520 -32120924 + MER102b DNA MER1_type 22 115 -1313 2252 78 24 0 chr9 110150520 110150814 -32120630 + AluSq SINE Alu 1 301 -12 541 231 151 91 chr9 110150814 110151010 -32120434 + MER102b DNA MER1_type 115 337 -4 258 344 0 0 chr9 110151218 110151308 -32120136 + L1ME4a LINE L1 5725 5814 -352 232 161 23 46 chr9 110151308 110151395 -32120049 + (TATAA)n Simple_repeat Simple_repeat 3 87 0 379 291 30 67 chr9 110151425 110151590 -32119854 + L1ME4a LINE L1 5869 6027 -94 1994 128 3 3 chr9 110151593 110151897 -32119547 + AluSq SINE Alu 1 304 -9 854 167 8 0 chr9 110152872 110153004 -32118440 - FLAM_C SINE Alu 0 133 1 3766 153 23 52 chr9 110153036 110153241 -32118203 + L1MB3 LINE L1 5417 5626 -557 2328 82 0 3 chr9 110153241 110153544 -32117900 + AluSc SINE Alu 1 302 -7 3766 153 23 52 chr9 110153544 110153603 -32117841 + L1MB3 LINE L1 5626 5685 -498 1710 151 29 11 chr9 110153603 110153916 -32117528 - AluSx SINE Alu 0 318 1 3766 153 23 52 chr9 110153916 110154432 -32117012 + L1MB3 LINE L1 5685 6176 -7 682 181 0 96 chr9 110154775 110154941 -32116503 - L1M3 LINE L1 -583 5600 5451 2091 101 0 29 chr9 110155313 110155621 -32115823 + AluSx SINE Alu 1 299 -13 217 419 11 0 chr9 110155622 110155715 -32115729 - MIR SINE MIR -85 123 30 1749 233 71 79 chr9 110155863 110156510 -32114934 + MLT1E1 LTR MaLR 13 654 0 483 170 75 0 chr9 110156616 110156710 -32114734 + AluSg1 SINE Alu 1 101 -208 2298 86 7 0 chr9 110156849 110157152 -32114292 + AluSq SINE Alu 1 305 -8 387 277 0 10 chr9 110157228 110157329 -32114115 - MIR SINE MIR -50 212 113 342 238 209 0 chr9 110157342 110157447 -32113997 - L2 LINE L2 -5 3308 3182 190 358 73 32 chr9 110157449 110157572 -32113872 - MIR SINE MIR -124 138 11 2617 174 18 51 chr9 110157641 110157775 -32113669 - L1MC3 LINE L1 -584 7201 7064 2248 86 13 0 chr9 110157775 110158078 -32113366 - AluSp SINE Alu -6 307 1 2617 174 18 51 chr9 110158078 110158488 -32112956 - L1MC3 LINE L1 -721 7064 6675 4808 158 45 26 chr9 110158589 110158607 -32112837 + L1MB7 LINE L1 4940 4956 -1228 2211 92 0 0 chr9 110158607 110158936 -32112508 + AluSq SINE Alu 1 313 0 4808 158 45 26 chr9 110158936 110159572 -32111872 + L1MB7 LINE L1 4956 5578 -606 2208 116 0 0 chr9 110159572 110159882 -32111562 + AluSq SINE Alu 1 310 -3 2026 120 0 0 chr9 110159884 110160195 -32111249 + AluSq SINE Alu 1 311 0 4808 158 45 26 chr9 110160195 110160746 -32110698 + L1MB7 LINE L1 5578 6168 -16 901 164 86 0 chr9 110160806 110160958 -32110486 + FRAM SINE Alu 1 165 -1 707 277 89 20 chr9 110161118 110161143 -32110301 - L1MC/D LINE L1 -714 5619 5597 721 205 16 0 chr9 110161143 110161270 -32110174 - FLAM_C SINE Alu -4 129 1 707 277 89 20 chr9 110161270 110161596 -32109848 - L1MC/D LINE L1 -736 5597 5254 2082 142 3 0 chr9 110161639 110161949 -32109495 + AluSx SINE Alu 1 311 -1 387 293 128 6 chr9 110162259 110162423 -32109021 + MIR SINE MIR 71 254 -8 1081 238 55 79 chr9 110162612 110163159 -32108285 - L1MC5 LINE L1 -44 7917 7384 180 77 0 0 chr9 110163343 110163369 -32108075 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 302 290 48 138 chr9 110163384 110163620 -32107824 - L2 LINE L2 -7 3265 3088 2359 113 3 0 chr9 110163620 110163930 -32107514 + AluSp SINE Alu 1 311 -2 302 290 48 138 chr9 110163930 110164148 -32107296 - L2 LINE L2 -184 3088 2852 322 288 86 0 chr9 110165023 110165162 -32106282 - MIR3 SINE MIR -39 169 19 509 288 72 51 chr9 110165208 110165444 -32106000 - MIR SINE MIR 0 262 22 509 276 185 50 chr9 110166091 110166366 -32105078 - L2 LINE L2 -3 3310 2973 1821 185 0 10 chr9 110166366 110166679 -32104765 + AluJb SINE Alu 1 310 -2 509 276 185 50 chr9 110166679 110166766 -32104678 - L2 LINE L2 -340 2973 2899 364 203 34 34 chr9 110166776 110166894 -32104550 - MER33 DNA MER1_type -1 362 245 2250 96 0 0 chr9 110167005 110167286 -32104158 - AluSx SINE Alu -31 281 1 350 155 279 39 chr9 110167317 110167446 -32103998 - MER33 DNA MER1_type -159 165 6 1963 140 58 0 chr9 110168924 110169216 -32102228 + AluSx SINE Alu 1 309 -3 2013 149 0 3 chr9 110169298 110169600 -32101844 + AluJb SINE Alu 5 305 -7 407 239 30 75 chr9 110169718 110169772 -32101672 - MIR SINE MIR -50 212 157 864 194 134 78 chr9 110169772 110170054 -32101390 + MER46C DNA MER2_type 1 305 -33 2410 92 0 16 chr9 110170054 110170368 -32101076 - AluSc SINE Alu 0 309 1 864 194 134 78 chr9 110170368 110170405 -32101039 + MER46C DNA MER2_type 305 338 0 407 239 30 75 chr9 110170405 110170417 -32101027 - MIR SINE MIR -105 157 146 2062 148 3 3 chr9 110170417 110170715 -32100729 - AluJb SINE Alu -14 298 1 407 239 30 75 chr9 110170715 110170781 -32100663 - MIR SINE MIR -116 146 85 505 331 39 6 chr9 110171095 110171273 -32100171 + MIR SINE MIR 79 262 0 264 88 138 88 chr9 110171420 110171458 -32099986 + L1MB2 LINE L1 6082 6117 -54 2526 60 0 3 chr9 110171458 110171757 -32099687 + AluY SINE Alu 1 298 -13 264 88 138 88 chr9 110171757 110171798 -32099646 + L1MB2 LINE L1 6117 6165 -6 294 26 0 24 chr9 110171798 110171840 -32099604 + AluSc SINE Alu 98 134 -165 2391 95 0 3 chr9 110171840 110172145 -32099299 + AluSg SINE Alu 1 304 -6 836 184 6 58 chr9 110172698 110172797 -32098647 - MER5A DNA MER1_type -24 165 77 2179 105 34 0 chr9 110172797 110173091 -32098353 - AluSx SINE Alu -8 304 1 836 184 6 58 chr9 110173091 110173165 -32098279 - MER5A DNA MER1_type -112 77 1 300 213 25 33 chr9 110173841 110173963 -32097481 + (TG)n Simple_repeat Simple_repeat 2 122 0 2114 128 7 0 chr9 110174398 110174688 -32096756 + AluSc SINE Alu 1 292 -17 2570 61 0 6 chr9 110174690 110175001 -32096443 + AluY SINE Alu 1 309 -2 616 209 59 20 chr9 110175001 110175154 -32096290 + MIR3 SINE MIR 43 201 -7 1870 151 25 0 chr9 110175650 110175967 -32095477 + MER7A DNA MER2_type 2 324 -22 2266 115 10 0 chr9 110175973 110176351 -32095093 + AluSq SINE Alu 1 381 0 2392 121 21 52 chr9 110176380 110176639 -32094805 - MLT1C LTR MaLR -31 436 191 2429 69 0 7 chr9 110176639 110176951 -32094493 - AluY SINE Alu 0 310 1 2392 121 21 52 chr9 110176951 110177110 -32094334 - MLT1C LTR MaLR -276 191 29 2316 109 0 3 chr9 110177348 110177651 -32093793 - AluSq SINE Alu -11 302 1 1641 176 67 0 chr9 110178277 110178565 -32092879 + AluJb SINE Alu 1 306 0 681 245 35 126 chr9 110178812 110179274 -32092170 + LTR16B LTR ERVL 38 457 -7 249 198 12 86 chr9 110179299 110179380 -32092064 + L1M3 LINE L1 5426 5500 -671 2340 82 0 3 chr9 110179381 110179675 -32091769 + AluSg SINE Alu 1 293 -17 437 116 14 0 chr9 110179680 110179749 -32091695 + L1MB3 LINE L1 6071 6140 -43 1975 150 20 0 chr9 110179749 110180043 -32091401 + AluSx SINE Alu 1 300 -12 2108 115 7 10 chr9 110180055 110180350 -32091094 + AluSx SINE Alu 3 296 -16 803 181 0 0 chr9 110180361 110180499 -32090945 + AluJb SINE Alu 172 309 -3 232 89 18 18 chr9 110180508 110180564 -32090880 + L1MB3 LINE L1 6127 6182 -1 2192 125 3 13 chr9 110181433 110181744 -32089700 + AluSx SINE Alu 1 308 -4 396 302 143 0 chr9 110182037 110182163 -32089281 + MIR SINE MIR 13 156 -106 2401 79 3 7 chr9 110182170 110182475 -32088969 + AluSg1 SINE Alu 1 304 -5 296 329 0 0 chr9 110182505 110182590 -32088854 - MIR SINE MIR 0 262 178 221 280 21 75 chr9 110182719 110182812 -32088632 - MIR SINE MIR -115 147 60 539 259 19 68 chr9 110183121 110183306 -32088138 + L1ME3A LINE L1 5599 5769 -401 2156 128 7 0 chr9 110183306 110183604 -32087840 + AluSx SINE Alu 1 300 -12 539 259 19 68 chr9 110183604 110183684 -32087760 + L1ME3A LINE L1 5769 5851 -319 676 155 34 34 chr9 110183687 110183835 -32087609 + L1MA10 LINE L1 5762 5909 -403 685 221 22 0 chr9 110183835 110183971 -32087473 + AluSp/q SINE Alu 164 302 -11 1997 169 54 26 chr9 110183988 110184413 -32087031 + L1MA10 LINE L1 5895 6331 -3 2245 113 7 0 chr9 110184461 110184771 -32086673 + AluSx SINE Alu 1 312 0 32 26 0 0 chr9 110184972 110185011 -32086433 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr9 110185090 110185111 -32086333 + AT_rich Low_complexity Low_complexity 1 21 0 640 156 82 44 chr9 110185111 110185246 -32086198 - FLAM_C SINE Alu -2 141 2 2224 126 0 0 chr9 110185340 110185634 -32085810 - AluSx SINE Alu -18 294 1 209 231 336 0 chr9 110185706 110185810 -32085634 - L2 LINE L2 -1 3271 3133 206 246 215 31 chr9 110186229 110186294 -32085150 - L2 LINE L2 -47 3225 3149 975 182 0 24 chr9 110186361 110186531 -32084913 + FAM SINE Alu 2 167 -8 208 343 97 15 chr9 110186755 110186889 -32084555 + L2 LINE L2 3127 3271 -1 428 299 0 22 chr9 110187194 110187331 -32084113 - MIR SINE MIR -50 212 79 2307 112 0 3 chr9 110187537 110187840 -32083604 + AluSg SINE Alu 1 302 -8 34 0 0 0 chr9 110188248 110188282 -32083162 + AT_rich Low_complexity Low_complexity 1 34 0 2042 110 72 0 chr9 110188291 110188582 -32082862 + AluSq SINE Alu 1 312 -1 2193 106 3 0 chr9 110188645 110188962 -32082482 + AluSp SINE Alu 1 318 0 2355 97 0 13 chr9 110189133 110189444 -32082000 + AluSx SINE Alu 1 307 -5 1144 141 33 0 chr9 110189861 110190045 -32081399 - MER20 DNA MER1_type 0 219 30 341 289 29 45 chr9 110190584 110190722 -32080722 - MIR SINE MIR -46 162 33 667 203 8 0 chr9 110191036 110191154 -32080290 + FLAM_C SINE Alu 1 119 -14 338 60 0 20 chr9 110191161 110191211 -32080233 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 1094 166 0 22 chr9 110191296 110191477 -32079967 - AluJb SINE Alu -1 311 135 29 28 0 0 chr9 110191533 110191569 -32079875 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr9 110191600 110191636 -32079808 + AT_rich Low_complexity Low_complexity 1 36 0 2132 133 0 10 chr9 110191640 110191949 -32079495 + AluSx SINE Alu 1 306 -6 2460 76 7 0 chr9 110192041 110192342 -32079102 - AluSc SINE Alu -5 304 2 760 185 50 68 chr9 110192401 110192461 -32078983 - L1MA9 LINE L1 -153 6159 6099 2175 109 0 3 chr9 110192461 110192764 -32078680 - AluSx SINE Alu 0 302 1 760 185 50 68 chr9 110192764 110192924 -32078520 - L1MA9 LINE L1 -213 6099 5942 230 81 0 0 chr9 110192924 110192961 -32078483 - AluSx SINE Alu -4 296 260 1229 112 0 0 chr9 110192961 110193122 -32078322 - AluSx SINE Alu -151 161 1 1198 125 0 0 chr9 110193132 110193300 -32078144 - AluSp SINE Alu -10 303 136 417 165 18 28 chr9 110193303 110193412 -32078032 - L1MA9 LINE L1 -360 5952 5845 986 137 10 103 chr9 110193412 110193584 -32077860 + L1MA5 LINE L1 5625 5725 -575 2030 115 3 54 chr9 110193584 110193897 -32077547 + AluSq SINE Alu 9 305 -8 986 137 10 103 chr9 110193897 110194031 -32077413 + L1MA5 LINE L1 5725 5870 -430 1729 166 39 0 chr9 110194922 110195205 -32076239 + AluSx SINE Alu 1 294 -18 301 160 6 216 chr9 110195388 110195464 -32075980 - MER112 DNA MER1_type -90 170 150 2079 117 0 4 chr9 110195464 110195763 -32075681 - AluSg SINE Alu 0 306 9 301 160 6 216 chr9 110195763 110195865 -32075579 - MER112 DNA MER1_type -110 150 28 266 235 47 35 chr9 110195903 110195988 -32075456 - MIR SINE MIR -78 184 99 272 289 78 23 chr9 110196052 110196180 -32075264 - MER5A DNA MER1_type -29 160 26 1867 131 4 0 chr9 110196652 110196919 -32074525 + AluSq SINE Alu 42 309 -4 2101 137 3 0 chr9 110196929 110197222 -32074222 + AluSx SINE Alu 1 294 -18 2460 97 0 0 chr9 110197524 110197833 -32073611 + AluSc SINE Alu 1 309 0 330 303 16 21 chr9 110198170 110198284 -32073160 + MIR SINE MIR 7 122 -86 2221 107 3 7 chr9 110199283 110199583 -32071861 + AluSx SINE Alu 1 299 -13 2284 110 3 3 chr9 110199591 110199899 -32071545 + AluSg SINE Alu 1 308 -2 2170 65 11 4 chr9 110199946 110200206 -32071238 + AluY SINE Alu 1 262 -49 299 299 0 13 chr9 110200353 110200430 -32071014 - MIR SINE MIR -155 107 32 195 69 0 0 chr9 110200430 110200459 -32070985 + (A)n Simple_repeat Simple_repeat 1 29 0 403 279 44 0 chr9 110200914 110201182 -32070262 - L1MC4 LINE L1 0 8042 7713 497 306 22 22 chr9 110201660 110201840 -32069604 - MIR SINE MIR 0 262 83 253 236 24 130 chr9 110202063 110202112 -32069332 - MIR3 SINE MIR -54 154 101 2237 115 17 0 chr9 110202112 110202408 -32069036 + AluSx SINE Alu 1 301 -11 253 236 24 130 chr9 110202408 110202481 -32068963 - MIR3 SINE MIR -107 101 45 232 336 40 27 chr9 110202684 110202833 -32068611 + L1M3c LINE L1 336 486 -5655 1767 245 34 24 chr9 110203033 110203376 -32068068 + L1M3c LINE L1 813 1164 -4977 2398 98 0 0 chr9 110203376 110203671 -32067773 - AluSx SINE Alu -17 295 1 1767 245 34 24 chr9 110203671 110203821 -32067623 + L1M3c LINE L1 1164 1311 -4830 2112 177 40 18 chr9 110203869 110204316 -32067128 + L1MA10 LINE L1 5867 6323 -11 683 96 64 0 chr9 110204353 110204447 -32066997 + AluJ/FLAM SINE Alu 2 101 -211 281 250 170 0 chr9 110204486 110204586 -32066858 + MIR SINE MIR 48 164 -98 232 282 14 28 chr9 110204651 110204722 -32066722 - MIR SINE MIR -79 183 114 186 339 89 81 chr9 110204732 110204856 -32066588 + L2 LINE L2 3139 3263 -9 2176 111 3 14 chr9 110204866 110205163 -32066281 + AluSg1 SINE Alu 1 294 -15 336 24 0 0 chr9 110205163 110205204 -32066240 + (CA)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr9 110205617 110205645 -32065799 + AT_rich Low_complexity Low_complexity 1 28 0 2264 108 0 19 chr9 110205645 110205960 -32065484 + AluSc SINE Alu 1 309 0 857 161 0 0 chr9 110205968 110206086 -32065358 - FLAM_C SINE Alu -15 118 1 2348 98 0 9 chr9 110206417 110206732 -32064712 + AluSx SINE Alu 1 312 0 2368 107 3 0 chr9 110206750 110207059 -32064385 + AluSx SINE Alu 1 310 -2 713 229 0 0 chr9 110207428 110207568 -32063876 + FLAM_C SINE Alu 3 142 -1 271 328 55 8 chr9 110207698 110207826 -32063618 - MIR SINE MIR -81 181 48 183 80 0 0 chr9 110208720 110208745 -32062699 + (CACCC)n Simple_repeat Simple_repeat 1 25 0 684 175 79 0 chr9 110210269 110210395 -32061049 - AluJb SINE Alu -176 136 1 527 146 22 22 chr9 110210395 110210483 -32060961 - AluSg/x SINE Alu -16 296 209 1650 110 0 0 chr9 110210515 110210724 -32060720 - AluSq SINE Alu -104 209 1 234 158 0 0 chr9 110210812 110210850 -32060594 + MER57A LTR ERV1 295 332 -71 180 77 0 0 chr9 110210852 110210878 -32060566 + (TAA)n Simple_repeat Simple_repeat 3 28 0 499 258 214 32 chr9 110210948 110211196 -32060248 - L2 LINE L2 -1 3312 3020 726 283 48 32 chr9 110211340 110211581 -32059863 + MIR SINE MIR 8 255 -7 2304 103 0 3 chr9 110211581 110211892 -32059552 - AluSq SINE Alu -3 310 1 294 200 43 0 chr9 110211914 110211984 -32059460 - L1ME LINE L1 -303 5818 5746 2138 145 3 0 chr9 110212369 110212673 -32058771 + AluSx SINE Alu 1 305 -7 1168 45 0 8 chr9 110213327 110213461 -32057983 + AluY SINE Alu 2 134 -177 2679 45 0 3 chr9 110213461 110213773 -32057671 + AluY SINE Alu 1 311 0 264 245 170 11 chr9 110213954 110214048 -32057396 + MIR SINE MIR 17 125 -83 2296 102 3 0 chr9 110214399 110214694 -32056750 + AluSp SINE Alu 2 297 -16 2246 119 0 0 chr9 110214704 110215006 -32056438 + AluSx SINE Alu 1 302 -10 1938 137 10 7 chr9 110215957 110216257 -32055187 + AluSg1 SINE Alu 1 301 -8 2233 125 0 0 chr9 110216459 110216762 -32054682 - AluSx SINE Alu -9 303 1 1603 148 52 46 chr9 110217073 110217378 -32054066 + AluJb SINE Alu 1 307 -5 206 77 51 0 chr9 110217414 110217453 -32053991 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 805 68 29 0 chr9 110217518 110217621 -32053823 - U6 snRNA snRNA 0 107 2 2083 136 7 0 chr9 110217650 110217945 -32053499 - AluSx SINE Alu -15 297 1 189 235 99 37 chr9 110218034 110218115 -32053329 + MIR SINE MIR 45 130 -78 1616 169 0 65 chr9 110218164 110218471 -32052973 - AluJo SINE Alu -15 297 11 542 84 0 0 chr9 110218759 110218830 -32052614 + Alu SINE Alu 6 76 -242 2278 113 0 0 chr9 110218845 110219155 -32052289 - AluSx SINE Alu -2 310 1 482 139 0 0 chr9 110219155 110219227 -32052217 - AluJ/FLAM SINE Alu -220 92 21 2350 85 0 7 chr9 110219471 110219766 -32051678 + AluY SINE Alu 2 294 -17 1980 112 4 0 chr9 110219956 110220215 -32051229 - AluSx SINE Alu -26 286 27 1807 175 0 16 chr9 110220528 110220843 -32050601 + AluJo SINE Alu 1 310 -2 1100 138 12 0 chr9 110221091 110221258 -32050186 - AluSq SINE Alu -11 302 134 2233 108 0 3 chr9 110221258 110221554 -32049890 - AluSg SINE Alu -15 295 1 311 85 43 0 chr9 110222619 110222666 -32048778 + AluJo/FLAM SINE Alu 84 132 -170 1006 113 0 0 chr9 110222669 110222802 -32048642 + AluSq/x SINE Alu 1 133 -180 2098 88 34 3 chr9 110222940 110223235 -32048209 + AluSx SINE Alu 1 304 -8 882 150 0 0 chr9 110224423 110224556 -32046888 - FLAM_C SINE Alu 0 133 1 926 113 0 8 chr9 110225063 110225187 -32046257 + FLAM_C SINE Alu 1 123 -20 38 0 0 20 chr9 110225187 110225220 -32046224 + AT_rich Low_complexity Low_complexity 1 34 -14 947 92 145 0 chr9 110225220 110225372 -32046072 + L1PA11 LINE L1 6000 6173 -1 38 0 0 20 chr9 110225372 110225387 -32046057 + AT_rich Low_complexity Low_complexity 34 48 0 24 0 0 0 chr9 110225434 110225458 -32045986 + AT_rich Low_complexity Low_complexity 1 24 0 2236 117 3 0 chr9 110225789 110226089 -32045355 + AluSx SINE Alu 1 301 -11 579 204 73 0 chr9 110226199 110226336 -32045108 - L1ME4a LINE L1 -195 5926 5780 24 0 0 0 chr9 110226800 110226824 -32044620 + AT_rich Low_complexity Low_complexity 1 24 0 227 200 0 0 chr9 110229173 110229223 -32042221 + A-rich Low_complexity Low_complexity 5 54 0 593 231 227 8 chr9 110231627 110231891 -32039553 - L1ME3A LINE L1 -3 6167 5846 2086 108 14 0 chr9 110231891 110232189 -32039255 - AluSx SINE Alu 0 302 1 518 174 36 7 chr9 110232199 110232372 -32039072 - L1ME3A LINE L1 -386 5776 5559 465 265 126 35 chr9 110232368 110232878 -32038566 + L1ME LINE L1 4619 5081 -1081 * 2463 71 0 10 chr9 110232878 110233187 -32038257 + AluSc SINE Alu 1 306 -3 465 265 126 35 chr9 110233187 110233483 -32037961 + L1ME LINE L1 5081 5567 -595 340 108 47 0 chr9 110233998 110234062 -32037382 + AluJ/FLAM SINE Alu 24 78 -224 290 182 0 0 chr9 110234162 110234206 -32037238 - Alu SINE Alu -257 44 1 200 245 19 0 chr9 110235231 110235284 -32036160 - MIR SINE MIR -58 204 151 1967 136 3 23 chr9 110235291 110235601 -32035843 - AluSx SINE Alu -6 306 3 2244 92 33 7 chr9 110235628 110235932 -32035512 - AluSx SINE Alu 0 312 1 1794 127 88 0 chr9 110235934 110236218 -32035226 - AluSg SINE Alu -1 309 1 1864 159 10 10 chr9 110236220 110236516 -32034928 - AluJo SINE Alu -16 296 1 194 0 39 0 chr9 110236520 110236546 -32034898 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2266 86 0 4 chr9 110236548 110236827 -32034617 - AluSg SINE Alu -29 281 4 520 225 0 63 chr9 110237077 110237171 -32034273 - FLAM_C SINE Alu -201 111 23 2137 87 30 24 chr9 110237171 110237469 -32033975 + AluSg1 SINE Alu 1 300 -9 520 225 0 63 chr9 110237469 110237485 -32033959 - FLAM_C SINE Alu -289 23 8 1648 116 0 22 chr9 110237603 110237835 -32033609 + AluSc SINE Alu 1 227 -82 311 322 69 2 chr9 110237872 110238100 -32033344 - L2 LINE L2 -301 2971 2726 2178 115 10 0 chr9 110238464 110238774 -32032670 + AluSq SINE Alu 1 313 0 198 103 0 0 chr9 110238880 110238909 -32032535 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 496 281 53 32 chr9 110239218 110239503 -32031941 + L1M4 LINE L1 2736 3026 -3120 1691 185 0 7 chr9 110239503 110239789 -32031655 + AluJb SINE Alu 1 284 -28 219 36 0 0 chr9 110239805 110239833 -32031611 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2002 112 3 26 chr9 110241669 110241972 -32029472 - AluSx SINE Alu -16 296 1 1753 43 0 0 chr9 110242160 110242370 -32029074 - L1PA4 LINE L1 -8 6147 5938 2063 41 0 0 chr9 110242370 110242615 -32028829 + L1P LINE L1 4797 5041 -1105 515 211 139 28 chr9 110242689 110242869 -32028575 + MIR SINE MIR 63 262 0 394 187 11 44 chr9 110242917 110243008 -32028436 + L2 LINE L2 3226 3313 0 1254 191 66 26 chr9 110243317 110243610 -32027834 - AluSx SINE Alu 0 304 1 24 53 0 0 chr9 110244761 110244799 -32026645 + AT_rich Low_complexity Low_complexity 1 38 0 210 37 0 0 chr9 110244924 110244951 -32026493 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2095 115 0 10 chr9 110245033 110245321 -32026123 + AluSg SINE Alu 13 297 -13 397 240 10 99 chr9 110246622 110246814 -32024630 + MIR SINE MIR 21 195 -67 1269 181 6 95 chr9 110247584 110247922 -32023522 - AluJb SINE Alu -4 308 1 2886 6 0 3 chr9 110247924 110248236 -32023208 - AluYa5 SINE Alu 0 311 1 1109 106 0 0 chr9 110248239 110248381 -32023063 - AluSq/x SINE Alu -171 142 1 1928 168 0 3 chr9 110248404 110248714 -32022730 - AluJo SINE Alu -3 309 1 239 211 0 18 chr9 110248777 110248834 -32022610 + L2 LINE L2 3257 3312 -1 462 174 0 0 chr9 110248868 110248937 -32022507 + AluS SINE Alu 1 69 -244 237 262 78 29 chr9 110249050 110249153 -32022291 - BSR/Beta Satellite Satellite -25 127 20 470 129 0 0 chr9 110249310 110249372 -32022072 - AluJ/FLAM SINE Alu -236 76 15 264 122 0 0 chr9 110250007 110250048 -32021396 + (TG)n Simple_repeat Simple_repeat 1 41 0 334 345 7 21 chr9 110250048 110250190 -32021254 - L2 LINE L2 -17 3255 3116 2640 37 0 0 chr9 110250817 110251114 -32020330 + AluY SINE Alu 1 297 -14 650 182 74 0 chr9 110251438 110251559 -32019885 + AluJ SINE Alu 3 132 -170 247 226 57 19 chr9 110251914 110252020 -32019424 - MIR SINE MIR -60 202 93 228 312 0 13 chr9 110252137 110252214 -32019230 - L2 LINE L2 -3 3269 3194 2215 130 3 0 chr9 110252255 110252562 -32018882 + AluSx SINE Alu 2 309 -3 1069 177 0 21 chr9 110252563 110252740 -32018704 + AluJ SINE Alu 125 299 -13 1978 141 10 10 chr9 110252740 110253053 -32018391 + AluSq SINE Alu 1 313 0 1069 177 0 21 chr9 110253053 110253067 -32018377 + AluJ SINE Alu 299 312 0 1987 148 26 0 chr9 110253075 110253379 -32018065 + AluSx SINE Alu 1 312 0 2315 99 3 6 chr9 110253505 110253817 -32017627 + AluY SINE Alu 1 311 0 955 106 43 0 chr9 110254473 110254614 -32016830 + MER2 DNA MER2_type 64 210 -135 1817 136 42 36 chr9 110254676 110254985 -32016459 + AluJb SINE Alu 2 312 0 316 121 69 0 chr9 110254990 110255048 -32016396 + MER2 DNA MER2_type 136 197 -148 262 150 233 33 chr9 110255106 110255166 -32016278 + MER2 DNA MER2_type 269 340 -5 248 337 41 47 chr9 110255186 110255358 -32016086 - L2 LINE L2 -212 3060 2890 422 241 19 19 chr9 110256094 110256202 -32015242 - MIR SINE MIR -65 143 36 202 324 123 29 chr9 110256272 110256442 -32015002 + L2 LINE L2 2313 2498 -816 2118 124 3 0 chr9 110256453 110256761 -32014683 + AluSq SINE Alu 1 309 0 1783 133 26 55 chr9 110256896 110257040 -32014404 + AluJb SINE Alu 1 148 -164 1879 107 0 0 chr9 110257040 110257282 -32014162 + AluSq SINE Alu 57 298 -15 1783 133 26 55 chr9 110257282 110257445 -32013999 + AluJb SINE Alu 148 299 -13 2454 76 3 0 chr9 110257579 110257880 -32013564 - AluSp SINE Alu -11 302 1 195 129 0 0 chr9 110258304 110258335 -32013109 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 224 229 21 0 chr9 110258691 110258739 -32012705 - MIR SINE MIR -84 124 76 25 31 0 0 chr9 110259382 110259414 -32012030 + AT_rich Low_complexity Low_complexity 1 32 0 4133 75 0 16 chr9 110259430 110259979 -32011465 - L1PA7 LINE L1 -2 6152 5613 1694 129 65 0 chr9 110260080 110260321 -32011123 - MER46B DNA MER2_type -2555 176 38 2035 123 24 0 chr9 110260321 110260614 -32010830 + AluSx SINE Alu 1 300 -12 1694 129 65 0 chr9 110260614 110260651 -32010793 - MER46B DNA MER2_type -2693 38 5 202 266 78 16 chr9 110260712 110260776 -32010668 + L2 LINE L2 3169 3236 -36 2328 105 3 0 chr9 110260805 110261109 -32010335 + AluSx SINE Alu 1 305 -7 851 150 0 8 chr9 110261193 110261326 -32010118 + AluJo SINE Alu 3 134 -178 222 238 110 70 chr9 110262792 110263077 -32008367 + L2 LINE L2 1570 1932 -1382 194 210 306 0 chr9 110264165 110264227 -32007217 + MIR SINE MIR 57 137 -125 1888 114 0 0 chr9 110264259 110264521 -32006923 + AluSq SINE Alu 5 266 -47 210 143 0 0 chr9 110264931 110264966 -32006478 + (A)n Simple_repeat Simple_repeat 1 35 0 1389 99 0 5 chr9 110264972 110265173 -32006271 + AluSg/x SINE Alu 94 293 -17 300 303 48 41 chr9 110265248 110265393 -32006051 + MIR SINE MIR 80 225 -37 653 282 11 6 chr9 110265614 110265795 -32005649 + MIR SINE MIR 49 230 -32 2282 97 3 0 chr9 110266243 110266554 -32004890 + AluSp SINE Alu 1 312 -1 2227 109 3 0 chr9 110266819 110267131 -32004313 - AluSp SINE Alu 0 313 1 460 239 0 0 chr9 110267234 110267326 -32004118 + Tigger7 DNA MER2_type 1 92 -613 778 203 0 0 chr9 110268079 110268212 -32003232 + FLAM_C SINE Alu 1 133 0 1617 198 38 3 chr9 110268237 110268555 -32002889 + Tigger7 DNA MER2_type 69 397 -336 279 54 0 0 chr9 110268553 110268590 -32002854 + Tigger7 DNA MER2_type 2429 2465 -122 * 225 65 0 0 chr9 110268590 110268621 -32002823 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 784 157 0 0 chr9 110268623 110268738 -32002706 - AluSq/x SINE Alu -197 116 2 774 153 0 29 chr9 110269469 110269606 -32001838 - FLAM_C SINE Alu 0 133 1 245 217 113 52 chr9 110269766 110269881 -32001563 + MIR SINE MIR 13 134 -128 648 242 54 46 chr9 110269901 110269973 -32001471 - MER112 DNA MER1_type -2 258 188 2002 130 7 0 chr9 110269973 110270266 -32001178 - AluSx SINE Alu -17 295 1 648 242 54 46 chr9 110270266 110270433 -32001011 - MER112 DNA MER1_type -72 188 17 635 261 31 69 chr9 110270696 110270956 -32000488 - MIR SINE MIR 0 262 13 1192 68 0 0 chr9 110271414 110271562 -31999882 - AluSc SINE Alu -161 148 1 349 277 138 21 chr9 110271579 110271767 -31999677 - L1M4 LINE L1 -762 5384 5175 2252 92 0 16 chr9 110271802 110272107 -31999337 - AluSx SINE Alu -12 300 1 1570 149 7 23 chr9 110272431 110272732 -31998712 - AluJo SINE Alu -13 299 4 1784 154 0 10 chr9 110273097 110273402 -31998042 - AluJb SINE Alu -10 302 1 359 289 17 83 chr9 110273867 110274076 -31997368 + MIR SINE MIR 5 173 -89 2007 117 10 0 chr9 110274076 110274367 -31997077 + AluSx SINE Alu 1 294 -18 359 289 17 83 chr9 110274367 110274420 -31997024 + MIR SINE MIR 173 228 -34 2288 30 4 0 chr9 110274454 110274724 -31996720 - AluY SINE Alu -9 302 32 1891 111 17 0 chr9 110274832 110275121 -31996323 + AluSq SINE Alu 1 294 -19 2182 104 0 0 chr9 110275217 110275514 -31995930 - AluSg1 SINE Alu -11 298 2 1546 133 15 124 chr9 110275608 110275947 -31995497 + AluJb SINE Alu 7 308 -4 1870 113 4 0 chr9 110275947 110276211 -31995233 + AluSq SINE Alu 1 266 -47 210 143 0 0 chr9 110276621 110276656 -31994788 + (A)n Simple_repeat Simple_repeat 1 35 0 1389 99 0 5 chr9 110276662 110276863 -31994581 + AluSg/x SINE Alu 94 293 -17 300 303 48 41 chr9 110276938 110277083 -31994361 + MIR SINE MIR 80 225 -37 653 282 11 6 chr9 110277304 110277485 -31993959 + MIR SINE MIR 49 230 -32 2254 100 3 0 chr9 110277933 110278244 -31993200 + AluSp SINE Alu 1 312 -1 2227 109 3 0 chr9 110278509 110278821 -31992623 - AluSp SINE Alu 0 313 1 460 239 0 0 chr9 110278924 110279016 -31992428 + Tigger7 DNA MER2_type 1 92 -641 778 203 0 0 chr9 110279769 110279902 -31991542 + FLAM_C SINE Alu 1 133 0 1419 207 41 3 chr9 110279927 110280217 -31991227 + Tigger7 DNA MER2_type 69 369 -364 451 241 14 76 chr9 110280346 110280491 -31990953 - MIR SINE MIR -111 151 16 1423 184 55 0 chr9 110280759 110281030 -31990414 - AluJo SINE Alu -26 286 1 296 312 36 26 chr9 110281785 110281960 -31989484 - MIR SINE MIR -52 210 35 220 169 42 84 chr9 110282846 110282917 -31988527 - MIR3 SINE MIR -21 187 120 237 233 189 33 chr9 110283292 110283382 -31988062 + L2 LINE L2 3210 3313 0 198 330 0 44 chr9 110283599 110283690 -31987754 + MIR3 SINE MIR 105 191 -17 243 236 229 90 chr9 110284395 110284566 -31986878 + MIR SINE MIR 20 208 -54 441 219 302 10 chr9 110284577 110284751 -31986693 - MIR SINE MIR 0 262 140 1673 140 0 78 chr9 110284751 110285072 -31986372 - AluJb SINE Alu -15 297 2 441 219 302 10 chr9 110285072 110285089 -31986355 - MIR SINE MIR -122 140 15 2095 114 0 0 chr9 110285195 110285492 -31985952 - AluSq SINE Alu -16 297 1 201 239 28 14 chr9 110286008 110286061 -31985383 + T-rich Low_complexity Low_complexity 1 57 -15 2113 99 71 3 chr9 110286061 110286383 -31985061 - L1PB1 LINE L1 -1 6150 5807 201 239 28 14 chr9 110286383 110286400 -31985044 + T-rich Low_complexity Low_complexity 57 72 0 1255 159 0 14 chr9 110286641 110286848 -31984596 - AluJb SINE Alu -22 290 87 195 293 106 24 chr9 110286894 110287017 -31984427 + MIR SINE MIR 8 140 -122 1011 201 0 32 chr9 110287086 110287305 -31984139 - AluJb SINE Alu -13 299 88 375 273 62 37 chr9 110287996 110288157 -31983287 + MIR SINE MIR 31 195 -67 647 276 31 41 chr9 110288346 110288542 -31982902 + MIR SINE MIR 29 222 -40 231 219 0 0 chr9 110288576 110288617 -31982827 - MIR SINE MIR -30 232 192 229 417 50 0 chr9 110288851 110288970 -31982474 - MIR SINE MIR -12 250 126 614 223 67 57 chr9 110288970 110289163 -31982281 + MIR SINE MIR 1 195 -67 2044 112 0 16 chr9 110289238 110289541 -31981903 + AluSx SINE Alu 3 300 -12 2058 127 0 0 chr9 110289931 110290230 -31981214 - AluSx SINE Alu -13 299 1 522 0 0 0 chr9 110290238 110290296 -31981148 + (TTA)n Simple_repeat Simple_repeat 2 59 0 1659 158 4 4 chr9 110290297 110290562 -31980882 - AluJb SINE Alu -47 265 1 180 306 83 0 chr9 110290790 110290862 -31980582 - MIR SINE MIR -90 118 41 * 410 251 91 67 chr9 110290845 110291196 -31980248 + L2 LINE L2 2868 3312 -1 2235 92 13 0 chr9 110291251 110291556 -31979888 + AluSq SINE Alu 1 309 -4 1151 149 145 13 chr9 110291556 110291784 -31979660 - L1MB7 LINE L1 -24 6160 5903 714 156 0 0 chr9 110291786 110291908 -31979536 - L1MB7 LINE L1 -417 5761 5640 207 0 0 0 chr9 110291924 110291947 -31979497 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 369 341 29 7 chr9 110292661 110292799 -31978645 - MIR SINE MIR -102 160 20 343 325 71 56 chr9 110292841 110293038 -31978406 - MIR SINE MIR -60 202 3 977 126 11 0 chr9 110293061 110293235 -31978209 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 181 300 50 0 chr9 110293241 110293301 -31978143 - L2 LINE L2 -14 3299 3237 319 273 16 66 chr9 110294040 110294161 -31977283 - MER5A DNA MER1_type -58 131 17 527 229 201 0 chr9 110294180 110294324 -31977120 - MER5A DNA MER1_type -8 181 9 442 221 52 78 chr9 110294986 110295064 -31976380 + MIR SINE MIR 84 158 -104 966 142 108 40 chr9 110295064 110295240 -31976204 + MER5A DNA MER1_type 1 188 -1 442 221 52 78 chr9 110295240 110295315 -31976129 + MIR SINE MIR 158 233 -29 1991 141 0 3 chr9 110295362 110295668 -31975776 - AluSx SINE Alu -7 305 1 265 300 29 43 chr9 110296198 110296338 -31975106 - MIR SINE MIR -5 257 120 329 325 33 118 chr9 110296659 110296887 -31974557 - L2 LINE L2 -2 3270 3073 2046 130 3 7 chr9 110296887 110297194 -31974250 + AluSx SINE Alu 1 306 -6 329 325 33 118 chr9 110297194 110297270 -31974174 - L2 LINE L2 -199 3073 2992 22 0 0 0 chr9 110298286 110298308 -31973136 + AT_rich Low_complexity Low_complexity 1 22 0 348 274 8 52 chr9 110298406 110298526 -31972918 + MIR SINE MIR 59 169 -39 223 192 0 0 chr9 110298526 110298578 -31972866 - MER5C DNA MER1_type -2 322 271 2281 109 0 0 chr9 110298590 110298902 -31972542 - AluSx SINE Alu 0 312 1 24 0 0 0 chr9 110298902 110298926 -31972518 + AT_rich Low_complexity Low_complexity 1 24 0 533 236 39 8 chr9 110299049 110299176 -31972268 - MER5C DNA MER1_type -193 131 1 440 308 111 51 chr9 110299426 110299549 -31971895 + MIR SINE MIR 1 115 -147 185 65 32 0 chr9 110299549 110299580 -31971864 + (TTTAA)n Simple_repeat Simple_repeat 3 34 0 1674 138 11 7 chr9 110299580 110299856 -31971588 - AluJb SINE Alu -27 285 9 440 308 111 51 chr9 110299856 110299965 -31971479 + MIR SINE MIR 114 248 -14 384 269 46 8 chr9 110300342 110300472 -31970972 + MLT1L LTR MaLR 104 238 -377 584 139 0 0 chr9 110300472 110300558 -31970886 - FRAM/FAM SINE Alu -95 81 1 2084 106 7 3 chr9 110300576 110300868 -31970576 + AluSg SINE Alu 3 295 -15 413 253 118 44 chr9 110300876 110301116 -31970328 + MLT1L LTR MaLR 239 418 -93 282 29 0 0 chr9 110301546 110301581 -31969863 + (TG)n Simple_repeat Simple_repeat 1 35 0 1494 168 9 75 chr9 110301646 110301979 -31969465 - AluJo SINE Alu -1 311 1 250 342 13 0 chr9 110302203 110302282 -31969162 - L2 LINE L2 0 3272 3193 2295 94 0 3 chr9 110302399 110302706 -31968738 - AluSx SINE Alu -6 306 1 198 0 0 0 chr9 110303247 110303269 -31968175 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2177 91 7 0 chr9 110303269 110303556 -31967888 - AluSp SINE Alu -20 293 2 2121 104 6 31 chr9 110303629 110303947 -31967497 - AluSq SINE Alu -3 310 1 669 213 46 46 chr9 110304657 110304873 -31966571 - MLT1A2 LTR MaLR 0 374 159 1315 122 56 0 chr9 110304880 110305093 -31966351 - AluSg SINE Alu -23 287 63 313 272 61 84 chr9 110305464 110305568 -31965876 - L1ME4a LINE L1 -171 5950 5852 2201 112 6 3 chr9 110305568 110305880 -31965564 - AluSq SINE Alu 0 313 1 313 272 61 84 chr9 110305880 110305988 -31965456 - L1ME4a LINE L1 -269 5852 5743 616 229 106 111 chr9 110306085 110306255 -31965189 - L2 LINE L2 -4 3309 3140 1865 161 0 16 chr9 110306255 110306571 -31964873 + AluJb SINE Alu 1 311 -1 616 229 106 111 chr9 110306571 110306806 -31964638 - L2 LINE L2 -173 3140 2906 281 315 22 0 chr9 110306897 110306989 -31964455 + L2 LINE L2 2601 2694 -620 495 249 207 5 chr9 110307048 110307241 -31964203 - MLT1K LTR MaLR -44 544 313 364 281 148 44 chr9 110307542 110307745 -31963699 + L2 LINE L2 2851 3074 -198 740 174 16 0 chr9 110307761 110307882 -31963562 - FLAM_A SINE Alu -12 130 8 431 271 21 76 chr9 110307945 110308089 -31963355 + L2 LINE L2 3137 3272 0 402 21 0 0 chr9 110308254 110308301 -31963143 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2580 109 25 5 chr9 110308301 110308669 -31962775 - MLT2A1 LTR ERVL -68 376 2 1367 141 128 8 chr9 110308669 110308918 -31962526 - AluSg SINE Alu -31 279 1 320 256 13 0 chr9 110309261 110309339 -31962105 - L2 LINE L2 -5 3267 3189 221 245 0 0 chr9 110309361 110309410 -31962034 + (TG)n Simple_repeat Simple_repeat 1 49 0 1703 153 21 17 chr9 110309470 110309758 -31961686 - AluSx SINE Alu -15 297 9 997 115 0 0 chr9 110309762 110309901 -31961543 - AluSq/x SINE Alu -174 139 1 25 0 0 0 chr9 110310007 110310032 -31961412 + AT_rich Low_complexity Low_complexity 1 25 0 2147 106 20 0 chr9 110310604 110310906 -31960538 - AluSx SINE Alu -4 308 1 393 285 146 4 chr9 110312197 110312397 -31959047 + MIR SINE MIR 13 235 -27 498 281 162 11 chr9 110312972 110313157 -31958287 - MIR SINE MIR -49 213 1 1942 125 44 0 chr9 110313324 110313619 -31957825 + AluSg SINE Alu 1 308 -2 2394 100 10 3 chr9 110313996 110314307 -31957137 - AluSq SINE Alu 0 313 1 182 339 15 15 chr9 110314636 110314701 -31956743 + L2 LINE L2 3204 3268 -4 195 129 0 0 chr9 110314731 110314762 -31956682 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 243 229 21 0 chr9 110315118 110315166 -31956278 - MIR SINE MIR -84 124 76 25 31 0 0 chr9 110315809 110315841 -31955603 + AT_rich Low_complexity Low_complexity 1 32 0 6808 70 13 3 chr9 110315857 110317223 -31954221 - L1PA7 LINE L1 -2 6152 4790 833 174 0 0 chr9 110317450 110317582 -31953862 + FLAM_C SINE Alu 1 132 -11 22 80 0 0 chr9 110317582 110317632 -31953812 + AT_rich Low_complexity Low_complexity 1 50 0 2396 92 0 0 chr9 110317650 110317943 -31953501 + AluSc SINE Alu 1 293 -16 776 171 0 23 chr9 110317994 110318123 -31953321 + FLAM_C SINE Alu 2 127 -6 2123 122 0 0 chr9 110318352 110318656 -31952788 + AluSg SINE Alu 1 304 0 611 284 76 5 chr9 110318717 110318992 -31952452 + L2 LINE L2 2775 3074 -239 2103 118 3 3 chr9 110318997 110319326 -31952118 + AluSp SINE Alu 1 329 0 1525 106 200 16 chr9 110319673 110319928 -31951516 + AluSg1 SINE Alu 7 308 -1 720 96 0 0 chr9 110319931 110320025 -31951419 + AluSq SINE Alu 135 228 -85 292 137 0 0 chr9 110320079 110320130 -31951314 + Alu SINE Alu 247 297 -5 21 0 0 0 chr9 110320339 110320360 -31951084 + AT_rich Low_complexity Low_complexity 1 21 0 2190 142 3 0 chr9 110320360 110320670 -31950774 - AluSx SINE Alu -1 311 1 263 284 181 37 chr9 110320904 110321147 -31950297 - L3 LINE CR1 -161 1416 1139 28 29 0 0 chr9 110321361 110321396 -31950048 + AT_rich Low_complexity Low_complexity 1 35 0 1991 150 0 10 chr9 110321407 110321707 -31949737 + AluSx SINE Alu 1 297 -15 626 272 36 76 chr9 110322310 110322532 -31948912 - L1M4 LINE L1 -2828 3318 3089 2160 124 0 13 chr9 110322532 110322838 -31948606 - AluSx SINE Alu -10 302 1 626 272 36 76 chr9 110322838 110322919 -31948525 - L1M4 LINE L1 -3057 3089 3006 219 36 0 0 chr9 110322919 110322947 -31948497 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 626 272 36 76 chr9 110322947 110322963 -31948481 - L1M4 LINE L1 -3140 3006 2991 1715 185 0 7 chr9 110322963 110323249 -31948195 - AluJb SINE Alu -28 284 1 626 272 36 76 chr9 110323249 110323534 -31947910 - L1M4 LINE L1 -3155 2991 2736 190 200 0 0 chr9 110323634 110323674 -31947770 - MIR SINE MIR -64 144 105 2196 115 10 0 chr9 110323974 110324284 -31947160 - AluSq SINE Alu 0 313 1 371 342 92 4 chr9 110324648 110324876 -31946568 + L2 LINE L2 2726 2973 -341 300 369 81 0 chr9 110325040 110325200 -31946244 + L2 LINE L2 328 500 -2814 347 266 146 35 chr9 110325278 110325477 -31945967 - MIR SINE MIR -36 226 6 290 250 16 89 chr9 110325494 110325618 -31945826 + MIR SINE MIR 63 177 -85 321 287 84 7 chr9 110325813 110325956 -31945488 - L2 LINE L2 -300 2972 2819 263 313 70 16 chr9 110327159 110327287 -31944157 - MIR SINE MIR -21 241 107 215 331 33 41 chr9 110327701 110327822 -31943622 + L2 LINE L2 3194 3313 0 633 293 82 5 chr9 110327883 110328091 -31943353 - MIR SINE MIR -32 230 7 270 211 254 53 chr9 110328463 110328577 -31942867 + L2 LINE L2 3136 3272 0 317 306 121 35 chr9 110328652 110328825 -31942619 + L2 LINE L2 3072 3259 -13 273 57 0 0 chr9 110328827 110328862 -31942582 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 32 0 0 0 chr9 110329390 110329422 -31942022 + AT_rich Low_complexity Low_complexity 1 32 0 190 277 46 62 chr9 110329515 110329580 -31941864 - L3 LINE CR1 -5 1572 1509 1938 122 0 4 chr9 110329858 110330137 -31941307 - AluSg SINE Alu -32 278 1 2146 163 55 0 chr9 110330137 110330541 -31940903 - L1MB3 LINE L1 -41 6142 5717 2188 128 7 0 chr9 110330820 110331116 -31940328 - AluSx SINE Alu -14 298 1 1012 125 0 0 chr9 110331116 110331252 -31940192 - AluSq/x SINE Alu -176 136 1 499 274 29 44 chr9 110332127 110332331 -31939113 + MIR SINE MIR 46 246 -16 751 129 0 0 chr9 110332334 110332435 -31939009 - AluSx SINE Alu -16 293 193 1181 116 0 0 chr9 110332436 110332582 -31938862 - AluSx SINE Alu -167 146 1 260 311 118 15 chr9 110332932 110333067 -31938377 + MIR3 SINE MIR 18 166 -42 2002 154 3 3 chr9 110333078 110333390 -31938054 - AluJb SINE Alu 0 312 1 198 103 0 0 chr9 110333395 110333424 -31938020 + (T)n Simple_repeat Simple_repeat 1 29 0 2484 69 10 0 chr9 110333574 110333878 -31937566 - AluSp SINE Alu -6 307 1 411 239 90 55 chr9 110334001 110334202 -31937242 + MIR SINE MIR 16 223 -39 180 0 0 0 chr9 110334375 110334395 -31937049 + (T)n Simple_repeat Simple_repeat 1 20 0 295 169 139 18 chr9 110334596 110334708 -31936736 + MIR SINE MIR 104 235 -27 376 341 29 7 chr9 110335955 110336093 -31935351 - MIR SINE MIR -102 160 20 330 325 71 56 chr9 110336135 110336332 -31935112 - MIR SINE MIR -60 202 3 1010 121 11 0 chr9 110336355 110336529 -31934915 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 181 300 50 0 chr9 110336535 110336595 -31934849 - L2 LINE L2 -14 3299 3237 321 273 16 66 chr9 110337334 110337455 -31933989 - MER5A DNA MER1_type -58 131 17 532 229 201 0 chr9 110337474 110337618 -31933826 - MER5A DNA MER1_type -8 181 9 435 233 44 74 chr9 110338253 110338358 -31933086 + MIR SINE MIR 63 157 -105 999 148 108 40 chr9 110338358 110338534 -31932910 + MER5A DNA MER1_type 1 188 -1 435 233 44 74 chr9 110338534 110338609 -31932835 + MIR SINE MIR 157 233 -29 2505 84 3 0 chr9 110338649 110338958 -31932486 - AluSg SINE Alu 0 310 1 405 111 0 0 chr9 110338965 110339019 -31932425 - AluJb SINE Alu -20 292 239 * 785 156 0 0 chr9 110339017 110339139 -31932305 - AluJb SINE Alu -114 198 77 1363 161 0 50 chr9 110339263 110339505 -31931939 - AluJo SINE Alu -82 230 1 551 309 31 0 chr9 110339788 110339979 -31931465 - MIR SINE MIR -1 261 65 267 300 14 0 chr9 110341454 110341524 -31929920 - MIR3 SINE MIR -46 162 92 198 205 60 133 chr9 110341756 110341839 -31929605 - MIR SINE MIR -146 116 40 379 206 0 0 chr9 110342183 110342256 -31929188 + L2 LINE L2 3241 3313 0 1123 232 128 21 chr9 110342885 110343268 -31928176 - MLT1J LTR MaLR -78 433 10 360 313 17 8 chr9 110343323 110343449 -31927995 - MIR SINE MIR -62 146 41 248 288 38 25 chr9 110343677 110343757 -31927687 + L2 LINE L2 3188 3268 -4 421 283 94 19 chr9 110343970 110344129 -31927315 - MIR SINE MIR -33 229 59 420 71 0 0 chr9 110344341 110344397 -31927047 + (CA)n Simple_repeat Simple_repeat 2 57 0 401 286 61 61 chr9 110344955 110345217 -31926227 + L2 LINE L2 2838 3099 -214 2440 94 0 0 chr9 110345217 110345516 -31925928 - AluSg SINE Alu -11 299 1 834 210 93 56 chr9 110345626 110345789 -31925655 - MER58A DNA MER1_type -2197 223 49 2155 131 3 0 chr9 110345789 110346101 -31925343 + AluSq SINE Alu 1 313 0 834 210 93 56 chr9 110346101 110346151 -31925293 - MER58A DNA MER1_type -2371 49 2 434 256 26 50 chr9 110346156 110346324 -31925120 + MIR SINE MIR 23 186 -73 242 304 22 33 chr9 110346330 110346422 -31925022 + L2 LINE L2 3223 3313 0 * 318 298 8 25 chr9 110346400 110346521 -31924923 - L2 LINE L2 0 3272 3154 291 265 31 0 chr9 110346651 110346749 -31924695 - Charlie8 DNA MER1_type -2222 195 95 2160 124 0 25 chr9 110346853 110347167 -31924277 - AluSq SINE Alu -7 306 1 397 316 0 18 chr9 110347187 110347301 -31924143 - MIR SINE MIR -62 146 35 419 264 8 32 chr9 110347719 110347844 -31923600 + MIR SINE MIR 1 122 -140 296 331 143 8 chr9 110348427 110348560 -31922884 - L2 LINE L2 0 3272 3122 883 316 96 26 chr9 110348758 110349495 -31921949 + L2 LINE L2 1619 2407 -907 342 225 14 0 chr9 110349501 110349572 -31921872 - MER81 DNA DNA -42 72 1 250 304 165 59 chr9 110349577 110349824 -31921620 + L2 LINE L2 2762 2981 -291 2295 108 3 0 chr9 110349824 110350129 -31921315 - AluSx SINE Alu -6 306 1 250 304 165 59 chr9 110350129 110350321 -31921123 + L2 LINE L2 2981 3212 -60 1714 123 105 11 chr9 110350811 110351088 -31920356 + AluSx SINE Alu 1 303 -9 2166 110 3 0 chr9 110351219 110351510 -31919934 - AluSx SINE Alu -20 292 1 354 306 7 54 chr9 110351539 110351686 -31919758 + MIR3 SINE MIR 6 145 -63 369 340 68 6 chr9 110351697 110351859 -31919585 - MER5B DNA MER1_type 0 178 7 278 252 19 9 chr9 110352675 110352782 -31918662 + (TG)n Simple_repeat Simple_repeat 1 108 0 269 244 35 35 chr9 110353197 110353283 -31918161 + MIR SINE MIR 68 153 -109 497 256 88 74 chr9 110354110 110354325 -31917119 - MIR SINE MIR -12 250 33 2253 79 0 4 chr9 110354413 110354692 -31916752 + AluSg SINE Alu 1 278 -32 190 277 46 62 chr9 110354971 110355036 -31916408 + L3 LINE CR1 1509 1572 -5 32 0 0 0 chr9 110355129 110355161 -31916283 + AT_rich Low_complexity Low_complexity 1 32 0 273 57 0 0 chr9 110355689 110355724 -31915720 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 317 306 121 35 chr9 110355726 110355899 -31915545 - L2 LINE L2 -13 3259 3072 270 211 254 53 chr9 110355974 110356088 -31915356 - L2 LINE L2 0 3272 3136 633 293 82 5 chr9 110356460 110356668 -31914776 + MIR SINE MIR 7 230 -32 215 331 33 41 chr9 110356729 110356850 -31914594 - L2 LINE L2 0 3313 3194 263 313 70 16 chr9 110357264 110357392 -31914052 + MIR SINE MIR 107 241 -21 352 184 24 24 chr9 110358497 110358622 -31912822 + CT-rich Low_complexity Low_complexity 1 125 0 249 256 26 0 chr9 110358659 110358737 -31912707 + CT-rich Low_complexity Low_complexity 2 81 0 216 0 0 0 chr9 110359206 110359230 -31912214 + (CA)n Simple_repeat Simple_repeat 2 25 0 2192 116 3 0 chr9 110359953 110360247 -31911197 - AluSp SINE Alu -18 295 1 2200 112 0 14 chr9 110360405 110360726 -31910718 - AluSx SINE Alu 0 317 1 449 286 57 109 chr9 110360726 110361156 -31910288 + L2 LINE L2 2862 3271 -1 2148 117 10 7 chr9 110361167 110361466 -31909978 + AluSx SINE Alu 1 300 -12 240 86 0 0 chr9 110361837 110361872 -31909572 + (CA)n Simple_repeat Simple_repeat 2 36 0 456 259 36 9 chr9 110361887 110361999 -31909445 - MIR SINE MIR -88 174 60 2413 61 10 3 chr9 110362152 110362447 -31908997 - AluY SINE Alu -13 298 2 273 277 44 72 chr9 110362455 110362633 -31908811 - MIR SINE MIR -8 200 20 432 202 21 11 chr9 110362999 110363093 -31908351 + MIR SINE MIR 69 163 -99 467 132 53 0 chr9 110363300 110363376 -31908068 - MADE1 DNA Mariner 0 80 1 530 263 113 33 chr9 110363385 110363467 -31907977 - MIR SINE MIR -11 251 177 955 258 108 56 chr9 110363467 110363636 -31907808 + MLT1D LTR MaLR 1 160 -345 2586 54 0 0 chr9 110363636 110363932 -31907512 - AluY SINE Alu -15 296 1 955 258 108 56 chr9 110363932 110364139 -31907305 + MLT1D LTR MaLR 160 410 -95 1826 161 3 7 chr9 110364139 110364424 -31907020 - AluSx SINE Alu -28 284 1 955 258 108 56 chr9 110364424 110364526 -31906918 + MLT1D LTR MaLR 410 505 0 530 263 113 33 chr9 110364526 110364656 -31906788 - MIR SINE MIR -85 177 22 1057 177 0 6 chr9 110364752 110364933 -31906511 + AluJb SINE Alu 133 312 0 494 319 5 16 chr9 110365491 110365679 -31905765 + L3 LINE CR1 1168 1353 -224 452 193 15 111 chr9 110365753 110365888 -31905556 - FLAM_C SINE Alu -11 122 1 498 248 0 0 chr9 110365906 110366023 -31905421 + MIR SINE MIR 90 206 -56 2416 71 0 3 chr9 110366074 110366371 -31905073 - AluY SINE Alu -15 296 1 1972 109 11 4 chr9 110366376 110366643 -31904801 - AluSx SINE Alu -21 291 23 1603 170 7 24 chr9 110366676 110366965 -31904479 + AluJb SINE Alu 3 286 -26 1397 164 45 77 chr9 110367057 110367103 -31904341 - MER2 DNA MER2_type -20 325 279 1765 45 0 0 chr9 110367103 110367301 -31904143 - AluY SINE Alu -17 294 97 1397 164 45 77 chr9 110367301 110367590 -31903854 - MER2 DNA MER2_type -66 279 1 926 224 16 0 chr9 110367899 110368082 -31903362 - MER5A DNA MER1_type 0 189 4 258 164 48 29 chr9 110369003 110369107 -31902337 + (TA)n Simple_repeat Simple_repeat 2 107 0 269 244 43 43 chr9 110369129 110369244 -31902200 + L1MC/D LINE L1 5684 5798 -2010 2087 134 0 0 chr9 110369362 110369677 -31901767 + AluSx SINE Alu 1 315 0 224 337 0 0 chr9 110370625 110370708 -31900736 + MIR3 SINE MIR 118 200 -8 539 235 107 46 chr9 110371169 110371365 -31900079 + MER63A DNA MER1_type 1 208 -2 743 189 0 8 chr9 110371763 110371895 -31899549 - FLAM_C SINE Alu -2 131 1 2334 84 0 7 chr9 110372361 110372657 -31898787 + AluSc SINE Alu 1 294 -15 375 306 15 15 chr9 110372816 110372950 -31898494 + LTR33 LTR ERVL 381 514 -7 433 287 21 7 chr9 110373078 110373221 -31898223 - MIR SINE MIR -65 197 53 280 266 161 8 chr9 110373855 110373979 -31897465 + MIR SINE MIR 13 155 -107 2158 139 0 0 chr9 110374402 110374711 -31896733 - AluSx SINE Alu -3 309 1 2052 92 59 4 chr9 110375446 110375717 -31895727 + AluSc SINE Alu 1 286 -23 1117 236 92 71 chr9 110376309 110376842 -31894602 + MLT1H LTR MaLR 6 549 0 269 229 0 0 chr9 110376908 110376956 -31894488 + MER58 DNA MER1_type 1 48 -176 301 250 62 9 chr9 110377016 110377128 -31894316 - L1ME LINE L1 -482 5639 5522 533 315 138 31 chr9 110377305 110377784 -31893660 + L3 LINE CR1 733 1262 -315 25 0 0 0 chr9 110377808 110377833 -31893611 + AT_rich Low_complexity Low_complexity 1 25 0 2235 133 0 0 chr9 110377877 110378186 -31893258 + AluSg SINE Alu 1 309 -1 1636 131 11 47 chr9 110378312 110378587 -31892857 + THE1B LTR MaLR 1 265 -99 303 269 77 0 chr9 110378688 110378792 -31892652 - L1ME LINE L1 -466 5655 5544 2091 122 7 3 chr9 110378862 110379149 -31892295 - AluSx SINE Alu -24 288 1 302 171 8 162 chr9 110379149 110379182 -31892262 - L1ME LINE L1 -2414 5394 5358 2108 129 3 3 chr9 110379182 110379485 -31891959 - AluSx SINE Alu -9 303 1 302 171 8 162 chr9 110379485 110379568 -31891876 - L1ME LINE L1 -2450 5358 5296 581 280 69 0 chr9 110379746 110379964 -31891480 + L3 LINE CR1 1263 1495 -82 281 355 72 48 chr9 110380741 110380992 -31890452 - L2 LINE L2 -50 3222 2966 386 261 33 109 chr9 110381118 110381329 -31890115 + MIR SINE MIR 12 206 -56 2264 116 0 0 chr9 110381599 110381909 -31889535 - AluSx SINE Alu -2 310 1 1030 244 87 8 chr9 110382184 110382686 -31888758 - L1ME LINE L1 -566 5604 5051 664 137 0 8 chr9 110382686 110382803 -31888641 - L1PA14 LINE L1 0 6161 6046 754 132 0 0 chr9 110382805 110382911 -31888533 - U6 snRNA snRNA -1 106 1 567 289 113 66 chr9 110383040 110383525 -31887919 - L1MC4a LINE L1 -104 6017 5510 2366 96 0 31 chr9 110383541 110383864 -31887580 - AluSq SINE Alu 0 313 1 1146 173 14 41 chr9 110383936 110384156 -31887288 - MER20 DNA MER1_type -2 217 4 361 200 14 0 chr9 110385050 110385120 -31886324 + L2 LINE L2 3201 3271 -1 1522 146 0 9 chr9 110385207 110385440 -31886004 - AluSg/x SINE Alu -4 308 78 180 0 0 0 chr9 110385990 110386010 -31885434 + (TTA)n Simple_repeat Simple_repeat 1 20 0 2155 99 41 3 chr9 110386391 110386684 -31884760 + AluSg SINE Alu 1 304 -6 2059 129 3 0 chr9 110388139 110388434 -31883010 - AluSg SINE Alu -14 296 1 365 301 108 11 chr9 110388631 110388807 -31882637 - MIR SINE MIR -50 212 20 2469 86 0 10 chr9 110388881 110389194 -31882250 + AluSg SINE Alu 1 310 0 297 257 57 19 chr9 110389811 110389916 -31881528 - L1ME4a LINE L1 -31 6090 5982 324 0 0 0 chr9 110389923 110389959 -31881485 + (TG)n Simple_repeat Simple_repeat 2 37 0 1754 136 52 72 chr9 110390001 110390266 -31881178 + MER2 DNA MER2_type 8 277 -68 2871 19 0 0 chr9 110390276 110390587 -31880857 - AluY SINE Alu 0 311 1 2065 110 3 49 chr9 110390587 110390759 -31880685 - AluSx SINE Alu -9 303 149 2214 114 10 0 chr9 110390759 110391056 -31880388 - AluSq SINE Alu -12 301 2 2065 110 3 49 chr9 110391056 110391199 -31880245 - AluSx SINE Alu -163 149 1 1754 136 52 72 chr9 110391199 110391278 -31880166 + MER2 DNA MER2_type 277 345 0 391 289 53 13 chr9 110391289 110391441 -31880003 - L1ME4a LINE L1 -205 5916 5759 363 310 97 0 chr9 110391553 110391698 -31879746 + MIR SINE MIR 34 192 -70 273 252 0 113 chr9 110392191 110392254 -31879190 + MIR SINE MIR 107 153 -109 2316 100 0 3 chr9 110392254 110392555 -31878889 + AluSx SINE Alu 9 308 -4 273 252 0 113 chr9 110392555 110392606 -31878838 + MIR SINE MIR 153 208 -54 2254 78 14 3 chr9 110392710 110393026 -31878418 + AluSp SINE Alu 2 320 0 564 190 84 80 chr9 110393410 110393673 -31877771 + MER5C DNA MER1_type 61 324 0 286 195 142 8 chr9 110393763 110393896 -31877548 + MIR SINE MIR 42 189 -61 273 329 132 0 chr9 110394099 110394251 -31877193 - MIR SINE MIR -45 217 46 196 260 73 19 chr9 110394836 110394974 -31876470 + MIR SINE MIR 20 193 -69 549 246 145 43 chr9 110395033 110395053 -31876391 - MIR SINE MIR -34 228 211 4335 103 39 2 chr9 110395053 110395663 -31875781 - MER41B LTR ERV1 0 635 3 549 246 145 43 chr9 110395663 110395849 -31875595 - MIR SINE MIR -51 211 1 2062 125 44 0 chr9 110396016 110396311 -31875133 + AluSg SINE Alu 1 308 -2 285 98 0 0 chr9 110396679 110396720 -31874724 + (T)n Simple_repeat Simple_repeat 1 41 0 425 71 0 122 chr9 110396988 110397086 -31874358 - AluSq/x SINE Alu -209 103 18 238 254 141 35 chr9 110397358 110397500 -31873944 - L3 LINE CR1 -175 1402 1246 28 29 0 0 chr9 110397797 110397832 -31873612 + AT_rich Low_complexity Low_complexity 1 35 0 1784 166 0 26 chr9 110397843 110398150 -31873294 + AluSq SINE Alu 1 299 -14 727 160 0 0 chr9 110398153 110398259 -31873185 - AluJo/FLAM SINE Alu -195 117 12 2182 72 3 31 chr9 110398683 110398997 -31872447 - AluY SINE Alu 0 306 1 2126 139 0 3 chr9 110399085 110399394 -31872050 - AluSg SINE Alu -2 308 1 29 0 0 0 chr9 110399402 110399431 -31872013 + AT_rich Low_complexity Low_complexity 1 29 0 1559 192 11 17 chr9 110399431 110399718 -31871726 - AluJo SINE Alu -27 285 1 1268 175 9 22 chr9 110399759 110399987 -31871457 + AluJo SINE Alu 87 311 -1 1565 164 27 82 chr9 110400150 110400480 -31870964 - AluJo SINE Alu 0 312 1 2024 140 10 0 chr9 110400945 110401237 -31870207 - AluSx SINE Alu -17 295 1 398 265 74 64 chr9 110402372 110402795 -31868649 - L1MC/D LINE L1 -441 5680 5254 209 229 21 0 chr9 110403231 110403279 -31868165 + CT-rich Low_complexity Low_complexity 5 53 0 402 274 194 48 chr9 110403396 110403772 -31867672 + L2 LINE L2 2837 3267 -5 203 261 23 80 chr9 110404091 110404179 -31867265 - MER5B DNA MER1_type 0 178 96 232 219 9 97 chr9 110404566 110404680 -31866764 + MIR SINE MIR 109 212 -50 2373 94 10 0 chr9 110404796 110405103 -31866341 + AluSq SINE Alu 1 310 -3 194 322 28 42 chr9 110405533 110405676 -31865768 - MIR SINE MIR -55 207 67 2184 118 0 10 chr9 110406511 110406817 -31864627 - AluSx SINE Alu -9 303 1 4363 142 39 9 chr9 110406994 110407763 -31863681 - Tigger3b DNA MER2_type -439 792 1 1272 132 0 0 chr9 110408154 110408343 -31863101 - AluSg/x SINE Alu -1 309 121 230 309 0 0 chr9 110409456 110409524 -31861920 + MIR SINE MIR 80 147 -115 1032 206 34 0 chr9 110410016 110410220 -31861224 + MER58A DNA MER1_type 10 220 -4 289 307 163 34 chr9 110410350 110410816 -31860628 - L2 LINE L2 -787 2527 2002 438 318 51 38 chr9 110410935 110411160 -31860284 - MIR SINE MIR -3 259 30 512 301 161 0 chr9 110411336 110411535 -31859909 + MIR SINE MIR 17 247 -15 713 213 20 0 chr9 110411560 110411710 -31859734 - MIR SINE MIR -31 231 79 981 146 0 0 chr9 110411827 110411992 -31859452 + (TA)n Simple_repeat Simple_repeat 2 166 0 180 111 0 0 chr9 110411992 110412019 -31859425 + (CA)n Simple_repeat Simple_repeat 1 27 0 2064 115 0 7 chr9 110412019 110412297 -31859147 - AluSc SINE Alu -33 276 1 439 273 12 43 chr9 110412956 110413117 -31858327 + MIR SINE MIR 97 252 -10 258 268 72 0 chr9 110413119 110413216 -31858228 + L2 LINE L2 3208 3311 -2 514 286 69 15 chr9 110413961 110414164 -31857280 + MIR SINE MIR 20 233 -29 1037 203 29 14 chr9 110414237 110414444 -31857000 - MER58A DNA MER1_type -3 221 12 1376 247 82 50 chr9 110415043 110415291 -31856153 + MLT1G1 LTR MaLR 2 241 -349 1754 144 0 4 chr9 110415291 110415555 -31855889 - AluSx SINE Alu -15 297 35 1376 247 82 50 chr9 110415555 110415799 -31855645 + MLT1G1 LTR MaLR 241 502 -88 1521 199 92 0 chr9 110415800 110416062 -31855382 + MER21B LTR ERV1 208 493 -370 347 173 12 37 chr9 110416081 110416162 -31855282 + MLT1G1 LTR MaLR 462 540 -2 305 334 35 80 chr9 110416268 110416645 -31854799 - L2 LINE L2 -18 3254 2895 181 233 33 67 chr9 110417549 110417588 -31853856 + L2 LINE L2 3205 3243 -29 345 82 0 0 chr9 110417588 110417637 -31853807 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 181 233 33 67 chr9 110417637 110417657 -31853787 + L2 LINE L2 3243 3262 -10 217 167 21 0 chr9 110418834 110418882 -31852562 + T-rich Low_complexity Low_complexity 2 50 0 458 337 20 15 chr9 110419540 110419739 -31851705 - MIR SINE MIR -56 206 7 2121 259 62 12 chr9 110419989 110420677 -31850767 - L1MC4 LINE L1 -1 8041 7237 2657 205 58 9 chr9 110420690 110421058 -31850386 - L1MC4 LINE L1 -974 7068 6720 204 40 0 0 chr9 110421058 110421083 -31850361 + (CA)n Simple_repeat Simple_repeat 2 26 0 2657 205 58 9 chr9 110421083 110421271 -31850173 - L1MC4 LINE L1 -1322 6720 6480 1700 171 29 0 chr9 110421271 110421573 -31849871 - AluJb SINE Alu 0 310 1 718 211 0 0 chr9 110421734 110421867 -31849577 - FLAM_C SINE Alu 0 133 1 275 258 30 0 chr9 110422117 110422183 -31849261 + GA-rich Low_complexity Low_complexity 2 69 0 1865 171 0 10 chr9 110422322 110422632 -31848812 + AluJo SINE Alu 1 307 -5 246 308 19 29 chr9 110422770 110422874 -31848570 + LTR67 LTR ERVL 99 201 -356 317 184 53 53 chr9 110423133 110423209 -31848235 + LTR33A LTR ERVL 447 522 -1 2225 100 20 0 chr9 110423815 110424116 -31847328 - AluSx SINE Alu -5 307 1 26 0 0 0 chr9 110424275 110424301 -31847143 + AT_rich Low_complexity Low_complexity 1 26 0 420 302 98 30 chr9 110425001 110425236 -31846208 - MIR SINE MIR -6 256 6 292 216 40 0 chr9 110425702 110425776 -31845668 + MIR SINE MIR 63 139 -123 423 0 0 0 chr9 110425877 110425924 -31845520 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 366 200 27 0 chr9 110426059 110426134 -31845310 + AluJ/FRAM SINE Alu 221 297 -5 600 221 43 14 chr9 110426173 110426313 -31845131 - MIR SINE MIR -98 164 21 212 259 172 17 chr9 110427546 110427662 -31843782 + MIR SINE MIR 119 252 -10 1065 196 17 43 chr9 110427688 110427918 -31843526 + MER58A DNA MER1_type 1 224 0 2266 76 3 45 chr9 110428073 110428387 -31843057 + AluY SINE Alu 1 301 -10 276 229 0 0 chr9 110428484 110428532 -31842912 + Charlie4 DNA MER1_type 1889 1936 -25 274 328 213 36 chr9 110428680 110428985 -31842459 - LTR16B LTR ERVL -2 462 104 2396 94 0 7 chr9 110429276 110429584 -31841860 - AluSx SINE Alu -6 306 1 187 305 148 8 chr9 110430457 110430585 -31840859 + MIR SINE MIR 116 261 -1 458 208 141 13 chr9 110431095 110431244 -31840200 - MIR SINE MIR -48 214 47 189 355 112 19 chr9 110431786 110432054 -31839390 + L2 LINE L2 2807 3099 -173 498 107 53 0 chr9 110432077 110432152 -31839292 - MADE1 DNA Mariner -1 79 1 433 92 0 53 chr9 110432716 110432792 -31838652 - L1MD2 LINE L1 -5 6354 6283 2370 92 7 0 chr9 110433425 110433730 -31837714 - AluSq SINE Alu -2 311 5 1874 84 0 0 chr9 110433870 110434108 -31837336 - AluSc SINE Alu -71 238 1 2387 92 0 16 chr9 110434348 110434653 -31836791 - AluSx SINE Alu -12 300 1 1552 151 13 23 chr9 110434977 110435276 -31836168 - AluJo SINE Alu -13 299 4 1899 154 0 10 chr9 110435641 110435946 -31835498 - AluJb SINE Alu -10 302 1 320 266 11 32 chr9 110436497 110436591 -31834853 + MIR SINE MIR 70 161 -101 2129 117 10 0 chr9 110436620 110436911 -31834533 + AluSx SINE Alu 1 294 -18 2420 89 3 0 chr9 110436998 110437300 -31834144 - AluSx SINE Alu -9 303 1 202 266 78 16 chr9 110437329 110437393 -31834051 - L2 LINE L2 -36 3236 3169 2038 113 86 0 chr9 110437454 110437491 -31833953 + MER46B DNA MER2_type 5 37 -2694 2035 123 24 0 chr9 110437491 110437784 -31833660 - AluSx SINE Alu -12 300 1 2038 113 86 0 chr9 110437784 110438073 -31833371 + MER46B DNA MER2_type 37 234 -2 2390 62 28 0 chr9 110438202 110438492 -31832952 + AluY SINE Alu 1 298 -13 519 138 0 32 chr9 110438529 110438623 -31832821 - AluS SINE Alu -221 92 2 1677 173 42 0 chr9 110438627 110438911 -31832533 - AluJb SINE Alu -16 296 1 2216 106 0 17 chr9 110438968 110439269 -31832175 + AluSx SINE Alu 1 296 -16 305 321 91 6 chr9 110439560 110439725 -31831719 + MIR SINE MIR 28 206 -56 672 177 0 18 chr9 110439964 110440077 -31831367 + FLAM_C SINE Alu 23 133 -10 2110 112 7 26 chr9 110440171 110440476 -31830968 + AluSx SINE Alu 1 299 -13 220 289 195 8 chr9 110440484 110440612 -31830832 + MIR SINE MIR 4 155 -107 1532 194 26 0 chr9 110440647 110440915 -31830529 + AluJo SINE Alu 8 282 -30 1900 168 7 0 chr9 110440917 110441209 -31830235 - AluJo SINE Alu -17 295 2 507 186 52 10 chr9 110441224 110441321 -31830123 + Tigger7 DNA MER2_type 2391 2491 0 199 252 148 43 chr9 110441367 110441482 -31829962 + MIR SINE MIR 20 146 -62 513 232 126 7 chr9 110441501 110441652 -31829792 - MER5B DNA MER1_type -5 173 5 2180 121 3 0 chr9 110441691 110441988 -31829456 + AluSx SINE Alu 1 298 -14 348 318 32 13 chr9 110442938 110443046 -31828398 + (TCCA)n Simple_repeat Simple_repeat 3 116 -43 2336 112 0 0 chr9 110443046 110443350 -31828094 - AluSx SINE Alu -8 304 1 348 318 32 13 chr9 110443350 110443395 -31828049 + (TCCA)n Simple_repeat Simple_repeat 116 159 0 237 325 17 74 chr9 110443591 110443641 -31827803 - L2 LINE L2 -249 3023 2972 2059 178 22 58 chr9 110443641 110443835 -31827609 + Tigger2a DNA MER2_type 1 200 -2508 1730 185 3 16 chr9 110443835 110444148 -31827296 - AluJo SINE Alu -1 311 3 2059 178 22 58 chr9 110444148 110444403 -31827041 + Tigger2a DNA MER2_type 200 434 0 237 325 17 74 chr9 110444403 110444601 -31826843 - L2 LINE L2 -300 2972 2791 212 188 31 47 chr9 110444855 110444919 -31826525 + L2 LINE L2 3245 3307 -6 195 372 29 29 chr9 110445021 110445158 -31826286 + MIR SINE MIR 17 153 -55 2104 87 11 7 chr9 110445292 110445597 -31825847 - AluSx SINE Alu 0 311 6 718 240 48 10 chr9 110445805 110446013 -31825431 - LTR33 LTR ERVL -304 217 2 2384 103 0 0 chr9 110446173 110446475 -31824969 - AluSx SINE Alu -10 302 1 197 324 67 19 chr9 110446501 110446606 -31824838 + L2 LINE L2 3152 3261 -11 655 165 13 6 chr9 110447205 110447452 -31823992 + AluJ SINE Alu 1 296 -16 1903 140 35 0 chr9 110447632 110447917 -31823527 - AluSx SINE Alu -17 295 1 1699 171 23 26 chr9 110447943 110448253 -31823191 - AluJo SINE Alu 0 312 4 671 180 0 43 chr9 110448262 110448427 -31823017 - FLAM_C SINE Alu 0 143 9 597 220 94 16 chr9 110448534 110448725 -31822719 + Charlie4a DNA MER1_type 195 400 -108 2340 109 0 0 chr9 110448725 110449029 -31822415 - AluSx SINE Alu -8 304 1 2289 113 0 0 chr9 110449035 110449337 -31822107 - AluSg SINE Alu -8 302 1 1849 138 6 72 chr9 110449519 110449853 -31821591 - AluJb SINE Alu 0 312 1 194 119 48 0 chr9 110450140 110450182 -31821262 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 367 281 74 27 chr9 110450195 110450342 -31821102 + MIR SINE MIR 19 172 -66 1248 183 91 42 chr9 110450369 110450472 -31820972 + AluJo SINE Alu 1 97 -215 2188 126 3 0 chr9 110450472 110450774 -31820670 - AluSx SINE Alu -9 303 1 1248 183 91 42 chr9 110450774 110450955 -31820489 + AluJo SINE Alu 97 299 -13 778 156 0 8 chr9 110450958 110451080 -31820364 + FLAM_C SINE Alu 4 124 -9 297 184 41 0 chr9 110451089 110451138 -31820306 + AluSc SINE Alu 127 177 -122 1194 177 10 0 chr9 110451138 110451336 -31820108 + AluJo SINE Alu 93 292 -20 2025 127 3 13 chr9 110452043 110452342 -31819102 - AluJb SINE Alu -16 296 1 932 103 0 0 chr9 110452477 110452593 -31818851 - FLAM_C SINE Alu -27 116 1 460 228 195 7 chr9 110452595 110452744 -31818700 - MER5A DNA MER1_type 0 189 13 203 125 25 0 chr9 110453599 110453639 -31817805 + T-rich Low_complexity Low_complexity 2 42 0 180 0 0 0 chr9 110453663 110453683 -31817761 + (TTA)n Simple_repeat Simple_repeat 2 21 0 312 289 99 26 chr9 110453700 110453852 -31817592 - L1ME4a LINE L1 -216 5905 5743 1282 252 110 8 chr9 110453886 110454359 -31817085 + L1ME4a LINE L1 5529 6049 -72 2363 92 0 16 chr9 110454779 110455085 -31816359 - AluSx SINE Alu -11 301 1 337 291 163 39 chr9 110455395 110455598 -31815846 - MIR SINE MIR -15 247 20 1897 159 3 10 chr9 110455919 110456233 -31815211 + AluJb SINE Alu 1 312 0 2787 203 41 60 chr9 110456445 110456635 -31814809 + MER82 DNA MER2_type 6 198 -455 2305 113 0 3 chr9 110456635 110456946 -31814498 + AluSx SINE Alu 1 310 -2 2787 203 41 60 chr9 110456946 110457140 -31814304 + MER82 DNA MER2_type 198 394 -259 2183 122 3 0 chr9 110457140 110457451 -31813993 + AluSx SINE Alu 1 312 0 2787 203 41 60 chr9 110457451 110457726 -31813718 + MER82 DNA MER2_type 394 653 0 2315 103 0 3 chr9 110457834 110458134 -31813310 - AluSg SINE Alu -11 299 1 907 95 0 0 chr9 110458135 110458251 -31813193 - AluSq/x SINE Alu -196 116 1 1076 159 50 84 chr9 110458989 110459023 -31812421 - MER33 DNA MER1_type -2266 319 285 1897 174 8 42 chr9 110459023 110459111 -31812333 + MER7A DNA MER2_type 4 93 -2945 2005 107 37 0 chr9 110459111 110459403 -31812041 - AluSx SINE Alu 0 302 1 1897 174 8 42 chr9 110459403 110459670 -31811774 + MER7A DNA MER2_type 93 346 0 1076 159 50 84 chr9 110459670 110459800 -31811644 - MER33 DNA MER1_type -2300 285 152 1738 141 16 49 chr9 110459800 110459960 -31811484 - AluJo SINE Alu -18 294 147 2089 128 7 0 chr9 110459960 110460256 -31811188 - AluSx SINE Alu -14 298 1 1738 141 16 49 chr9 110460256 110460399 -31811045 - AluJo SINE Alu -165 147 1 1076 159 50 84 chr9 110460399 110460554 -31810890 - MER33 DNA MER1_type -2433 152 10 266 208 0 0 chr9 110460522 110460570 -31810874 - MER3 DNA MER1_type -121 88 41 * 2482 67 0 7 chr9 110460980 110461280 -31810164 - AluY SINE Alu -13 298 1 864 203 33 0 chr9 110461288 110461470 -31809974 - MER5A DNA MER1_type -1 188 1 385 274 18 9 chr9 110461497 110461610 -31809834 - L2 LINE L2 -3 3310 3197 302 292 70 48 chr9 110461780 110461984 -31809460 - MIR SINE MIR -12 250 42 186 74 0 0 chr9 110462235 110462262 -31809182 - L2 LINE L2 -216 3056 3030 391 309 23 74 chr9 110462616 110462691 -31808753 + MIR SINE MIR 17 94 -168 2538 68 0 7 chr9 110462691 110463001 -31808443 + AluY SINE Alu 1 308 -3 391 309 23 74 chr9 110463001 110463181 -31808263 + MIR SINE MIR 94 259 -3 212 269 19 0 chr9 110463195 110463247 -31808197 + CT-rich Low_complexity Low_complexity 2 54 0 278 143 91 26 chr9 110464044 110464121 -31807323 - L1ME4a LINE L1 -1 6120 6039 2288 95 0 43 chr9 110464178 110464504 -31806940 - AluSx SINE Alu 0 312 1 728 270 98 62 chr9 110464512 110464798 -31806646 - L1ME LINE L1 -670 5492 5218 1983 141 0 41 chr9 110464798 110465117 -31806327 - AluJo SINE Alu 0 312 7 728 270 98 62 chr9 110465117 110465282 -31806162 - L1ME LINE L1 -944 5218 5060 339 78 0 0 chr9 110465282 110465333 -31806111 + (TG)n Simple_repeat Simple_repeat 2 52 0 728 270 98 62 chr9 110465333 110465926 -31805518 - L1ME LINE L1 -1102 5060 4416 1889 158 0 37 chr9 110465947 110466269 -31805175 - AluSx SINE Alu -2 310 1 2306 94 0 22 chr9 110466593 110466727 -31804717 + AluSx SINE Alu 1 136 -176 1938 92 4 8 chr9 110466727 110466970 -31804474 + AluSc SINE Alu 36 279 -30 244 0 0 0 chr9 110466970 110466997 -31804447 + (TAAAA)n Simple_repeat Simple_repeat 2 70 0 2306 94 0 22 chr9 110467003 110467187 -31804257 + AluSx SINE Alu 136 312 0 263 290 130 0 chr9 110467400 110467500 -31803944 + MIR SINE MIR 74 186 -76 242 191 394 0 chr9 110467746 110467840 -31803604 + MIR SINE MIR 122 252 -10 289 279 99 18 chr9 110467943 110468054 -31803390 + MIR SINE MIR 28 147 -115 214 179 0 0 chr9 110468762 110468801 -31802643 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 251 333 14 0 chr9 110468802 110468874 -31802570 - L2 LINE L2 -3 3269 3197 2272 101 0 0 chr9 110470739 110471046 -31800398 + AluSg SINE Alu 1 307 -3 917 266 8 28 chr9 110471389 110471476 -31799968 - MIR SINE MIR -4 258 171 1943 120 0 27 chr9 110471476 110471775 -31799669 + AluSg SINE Alu 1 291 -19 917 266 8 28 chr9 110471775 110471935 -31799509 - MIR SINE MIR -91 171 16 332 324 41 7 chr9 110472098 110472243 -31799201 + MIR SINE MIR 43 192 -70 2127 131 0 0 chr9 110472253 110472559 -31798885 - AluSx SINE Alu -6 306 1 257 218 218 0 chr9 110473198 110473276 -31798168 - Charlie8 DNA MER1_type -2248 169 75 2124 121 0 3 chr9 110473457 110473770 -31797674 - AluSx SINE Alu 0 312 1 675 146 7 15 chr9 110474472 110474609 -31796835 + CT-rich Low_complexity Low_complexity 1 136 0 2034 113 7 3 chr9 110474609 110474902 -31796542 - AluSc SINE Alu -15 294 1 274 336 128 8 chr9 110475067 110475192 -31796252 - L2 LINE L2 -8 3264 3125 580 283 74 2 chr9 110475455 110475714 -31795730 + MLT1J2 LTR MaLR 1 331 -119 1530 196 13 25 chr9 110475926 110476276 -31795168 - AluJb SINE Alu 0 346 1 5596 85 32 2 chr9 110476745 110477546 -31793898 + L1MA1 LINE L1 5478 6302 0 488 337 38 24 chr9 110478105 110478350 -31793094 - MIR SINE MIR -6 256 15 1107 174 14 9 chr9 110478356 110478575 -31792869 - AluJo SINE Alu -1 311 92 2143 84 0 27 chr9 110478763 110479084 -31792360 - AluY SINE Alu 0 311 1 2136 95 0 14 chr9 110479084 110479378 -31792066 - AluSg SINE Alu -18 292 3 236 204 20 31 chr9 110479387 110479485 -31791959 + CT-rich Low_complexity Low_complexity 4 100 0 889 140 14 7 chr9 110479951 110480094 -31791350 + AluJo SINE Alu 111 254 -58 924 139 17 40 chr9 110480410 110480583 -31790861 + FRAM SINE Alu 1 166 -10 248 300 0 0 chr9 110480857 110480907 -31790537 + MER45A DNA AcHobo 1 50 -128 1354 140 0 45 chr9 110480931 110481196 -31790248 - L1MA4 LINE L1 0 6300 6048 1983 134 0 0 chr9 110481196 110481480 -31789964 - AluSx SINE Alu -16 296 13 2365 132 2 20 chr9 110481513 110481526 -31789918 - L1MA4 LINE L1 -236 6064 6052 2109 100 0 0 chr9 110481526 110481807 -31789637 - AluSx SINE Alu -31 281 1 2365 132 2 20 chr9 110481807 110482186 -31789258 - L1MA4 LINE L1 -248 6052 5679 583 150 7 176 chr9 110482186 110482274 -31789170 + MER45A DNA AcHobo 52 106 -1475 1516 176 11 11 chr9 110482274 110482586 -31788858 + AluJo SINE Alu 3 314 0 583 150 7 176 chr9 110482586 110482649 -31788795 + MER45A DNA AcHobo 106 178 0 453 227 135 14 chr9 110482738 110482879 -31788565 + MIR SINE MIR 88 245 -17 582 312 46 1 chr9 110483550 110483746 -31787698 + MIR SINE MIR 3 205 -57 279 276 155 17 chr9 110484223 110484339 -31787105 - L2 LINE L2 -2 3311 3180 230 338 56 0 chr9 110484529 110484600 -31786844 + L2 LINE L2 3112 3186 -86 201 133 0 0 chr9 110484643 110484673 -31786771 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 763 286 50 13 chr9 110484888 110485126 -31786318 - MIR SINE MIR 0 262 16 305 281 21 21 chr9 110486544 110486640 -31784804 - L1MC4 LINE L1 -1323 6719 6624 305 316 0 13 chr9 110486564 110486643 -31784801 + L1MC4 LINE L1 6629 6706 -1336 216 111 0 0 chr9 110486670 110486706 -31784738 + (CA)n Simple_repeat Simple_repeat 1 36 0 238 294 113 67 chr9 110487339 110487502 -31783942 + MIR SINE MIR 60 235 -27 1778 153 3 7 chr9 110487502 110487803 -31783641 + AluJb SINE Alu 1 300 -12 238 294 113 67 chr9 110487803 110487833 -31783611 + MIR SINE MIR 235 262 0 344 317 126 72 chr9 110487930 110488719 -31782725 + L2 LINE L2 2023 2853 -461 1664 178 13 0 chr9 110489398 110489696 -31781748 + AluJo SINE Alu 11 312 0 213 39 0 0 chr9 110489704 110489730 -31781714 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 235 304 130 17 chr9 110491031 110491146 -31780298 + MIR3 SINE MIR 10 137 -71 1045 196 18 23 chr9 110491156 110491376 -31780068 + MER20 DNA MER1_type 1 219 0 211 292 0 0 chr9 110491609 110491657 -31779787 + polypyrimidine Low_complexity Low_complexity 4 51 0 463 270 120 66 chr9 110491657 110491916 -31779528 - L2 LINE L2 -14 3299 3027 273 341 0 0 chr9 110492678 110492763 -31778681 + L2 LINE L2 3225 3309 -4 1488 130 0 13 chr9 110493186 110493424 -31778020 - AluSg/x SINE Alu -7 305 71 206 291 47 47 chr9 110493424 110493551 -31777893 - L3 LINE CR1 -28 1549 1423 966 260 29 61 chr9 110493563 110493909 -31777535 + MER102b DNA MER1_type 1 335 -6 530 259 89 62 chr9 110493921 110494145 -31777299 + MIR SINE MIR 33 262 0 384 297 95 8 chr9 110494487 110494657 -31776787 + MIR SINE MIR 3 188 -62 225 128 85 21 chr9 110494657 110494704 -31776740 + LTR58 LTR ERV1 615 664 -15 191 300 73 18 chr9 110494753 110494863 -31776581 - L2 LINE L2 -11 3261 3146 238 197 40 40 chr9 110495595 110495671 -31775773 - MIR SINE MIR -1 261 186 803 129 0 0 chr9 110495687 110495811 -31775633 - AluSc SINE Alu -52 257 134 335 255 85 0 chr9 110495811 110495905 -31775539 - MIR SINE MIR -43 219 118 208 164 30 15 chr9 110496569 110496636 -31774808 + (TGAA)n Simple_repeat Simple_repeat 4 71 0 2457 137 32 46 chr9 110497186 110497623 -31773821 + Tigger2a DNA MER2_type 1 431 -3 1866 125 29 88 chr9 110497646 110498059 -31773385 + MER4A LTR ERV1 2 236 -229 639 143 143 14 chr9 110498092 110498164 -31773280 + MER4C LTR ERV1 300 361 -104 2151 107 0 0 chr9 110498164 110498462 -31772982 - AluSx SINE Alu -14 298 1 639 143 143 14 chr9 110498462 110498536 -31772908 + MER4C LTR ERV1 361 465 0 202 233 0 0 chr9 110498881 110498924 -31772520 - L2 LINE L2 -203 3069 3027 273 225 75 25 chr9 110499228 110499308 -31772136 - HERVFH19I LTR ERV1 -1840 5879 5796 426 249 59 41 chr9 110499379 110499782 -31771662 - MLT1H LTR MaLR 0 549 52 288 359 117 16 chr9 110499829 110500077 -31771367 - L2 LINE L2 -463 2851 2579 246 288 99 45 chr9 110500076 110500187 -31771257 + L2 LINE L2 3153 3269 -3 * 198 273 0 39 chr9 110500414 110500491 -31770953 + MIR SINE MIR 77 150 -58 254 320 50 20 chr9 110502038 110502064 -31769380 - MIR SINE MIR -147 115 91 362 46 62 0 chr9 110502064 110502129 -31769315 + (CA)n Simple_repeat Simple_repeat 2 70 0 254 320 50 20 chr9 110502129 110502202 -31769242 - MIR SINE MIR -171 91 13 219 36 0 0 chr9 110502817 110502845 -31768599 + (TG)n Simple_repeat Simple_repeat 1 28 0 220 277 22 71 chr9 110502872 110503056 -31768388 + GA-rich Low_complexity Low_complexity 1 175 0 412 295 53 53 chr9 110503057 110503264 -31768180 - MIR SINE MIR -5 257 51 450 231 51 0 chr9 110504249 110504366 -31767078 - L1ME3A LINE L1 -9 6161 6039 2601 199 105 151 chr9 110504368 110504930 -31766514 + MLT1H1 LTR MaLR 3 542 -4 1241 232 78 33 chr9 110504937 110505360 -31766084 - L1ME3A LINE L1 -130 6040 5599 351 261 23 23 chr9 110505360 110505448 -31765996 - L1MC4 LINE L1 -1341 6701 6614 296 70 0 0 chr9 110505496 110505539 -31765905 + MADE1 DNA Mariner 1 43 -37 267 31 0 0 chr9 110505560 110505592 -31765852 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 273 57 0 0 chr9 110505591 110505626 -31765818 + (CA)n Simple_repeat Simple_repeat 2 36 0 305 321 0 9 chr9 110505681 110505707 -31765737 + (TA)n Simple_repeat Simple_repeat 1 26 -82 2918 82 0 11 chr9 110505707 110506085 -31765359 + THE1C LTR MaLR 1 374 -1 305 321 0 9 chr9 110506085 110506167 -31765277 + (TA)n Simple_repeat Simple_repeat 26 108 0 186 133 0 0 chr9 110506188 110506218 -31765226 + (CATATA)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr9 110506237 110506260 -31765184 + (CA)n Simple_repeat Simple_repeat 2 24 0 321 294 167 8 chr9 110506303 110506429 -31765015 - L1ME3A LINE L1 -549 5621 5476 2204 98 7 0 chr9 110506430 110506736 -31764708 - AluSp SINE Alu -1 312 5 1418 170 145 0 chr9 110507404 110507687 -31763757 + MLT2C1 LTR ERVL 3 326 -71 239 161 71 0 chr9 110507736 110507792 -31763652 - LTR66 LTR ERVL -171 439 380 204 135 0 0 chr9 110507795 110507832 -31763612 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 274 143 0 0 chr9 110507832 110507874 -31763570 + MLT2C1 LTR ERVL 356 397 0 2031 123 3 0 chr9 110508382 110508675 -31762769 - AluSx SINE Alu -18 294 1 195 295 77 13 chr9 110508817 110508895 -31762549 + MIR SINE MIR 45 127 -81 425 293 85 62 chr9 110509354 110509869 -31761575 + L2 LINE L2 2613 3134 -138 225 0 0 0 chr9 110509869 110509894 -31761550 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 425 293 85 62 chr9 110509894 110509997 -31761447 + L2 LINE L2 3134 3233 -39 448 159 45 23 chr9 110510312 110510400 -31761044 + MLT1I LTR MaLR 318 407 -2 322 288 64 16 chr9 110510906 110511031 -31760413 - MIR SINE MIR -79 183 53 417 347 107 37 chr9 110511094 110511420 -31760024 - L2 LINE L2 -9 3263 2915 185 283 178 33 chr9 110511852 110512004 -31759440 - MIR SINE MIR -43 219 46 1163 257 69 42 chr9 110513576 110513911 -31757533 + MLT1E LTR MaLR 125 468 -125 391 42 0 0 chr9 110513911 110513959 -31757485 - L1PB1 LINE L1 -238 5913 5866 735 153 81 0 chr9 110513959 110514083 -31757361 + MLT1E LTR MaLR 521 654 0 2035 144 7 0 chr9 110514291 110514597 -31756847 - AluSx SINE Alu -4 308 1 189 295 51 0 chr9 110514667 110514745 -31756699 + MIR SINE MIR 69 150 -112 676 143 60 30 chr9 110514760 110514893 -31756551 + L1PA15 LINE L1 6008 6144 -21 27 49 0 0 chr9 110514894 110514935 -31756509 + AT_rich Low_complexity Low_complexity 1 41 0 2017 158 3 0 chr9 110514937 110515273 -31756171 - L1PB1 LINE L1 -1 6150 5814 256 146 0 0 chr9 110515309 110515357 -31756087 + L1M4 LINE L1 5782 5829 -345 6289 164 3 7 chr9 110515361 110517092 -31754352 - L1PB1 LINE L1 -368 5783 4060 298 288 20 0 chr9 110517099 110517252 -31754192 + L1M4 LINE L1 2368 2523 -3623 521 298 132 1 chr9 110517377 110517677 -31753767 - LTR16C LTR ERVL -43 448 85 202 174 186 105 chr9 110517742 110517828 -31753616 + MIR SINE MIR 140 232 -30 192 40 0 0 chr9 110517832 110517857 -31753587 + (T)n Simple_repeat Simple_repeat 1 25 0 1842 179 0 6 chr9 110517867 110518179 -31753265 + AluJb SINE Alu 1 310 -2 293 323 65 0 chr9 110518526 110518650 -31752794 + MIR SINE MIR 70 201 -61 2845 210 19 45 chr9 110518674 110519129 -31752315 + MER82 DNA MER2_type 23 457 -196 2218 126 3 0 chr9 110519129 110519439 -31752005 + AluSx SINE Alu 1 311 -1 2845 210 19 45 chr9 110519439 110519631 -31751813 + MER82 DNA MER2_type 457 653 0 249 301 56 0 chr9 110520295 110520438 -31751006 - MIR SINE MIR -12 250 100 23 0 0 0 chr9 110520584 110520607 -31750837 + AT_rich Low_complexity Low_complexity 1 23 0 473 329 37 8 chr9 110520611 110520857 -31750587 - MIR SINE MIR -3 259 7 184 286 0 0 chr9 110521249 110521291 -31750153 - L2 LINE L2 -18 3254 3213 196 258 76 0 chr9 110521310 110521376 -31750068 - MIR SINE MIR -108 154 84 433 242 32 16 chr9 110521983 110522107 -31749337 + MIR SINE MIR 28 153 -109 804 281 20 12 chr9 110522538 110522784 -31748660 + MIR SINE MIR 12 259 -3 252 361 69 0 chr9 110523183 110523327 -31748117 - L2 LINE L2 0 3272 3119 563 307 15 34 chr9 110523557 110523762 -31747682 - MIR SINE MIR -15 247 47 2020 131 139 16 chr9 110523774 110524155 -31747289 - MSTA LTR MaLR 0 428 1 9633 136 8 47 chr9 110524155 110525797 -31745647 - MSTA-int LTR MaLR 0 1580 3 2156 132 134 8 chr9 110525799 110526179 -31745265 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr9 110526544 110526567 -31744877 + AT_rich Low_complexity Low_complexity 1 23 0 1139 173 0 11 chr9 110526754 110526933 -31744511 - AluJb SINE Alu -24 288 112 690 87 0 0 chr9 110526965 110527068 -31744376 + (TCTCCC)n Simple_repeat Simple_repeat 1 103 0 5706 67 40 65 chr9 110527068 110528970 -31742474 + SVA Other Other 57 868 -520 6835 68 3 32 chr9 110528989 110529997 -31741447 + SVA Other Other 433 1386 0 643 197 8 8 chr9 110529997 110530119 -31741325 - AluJb SINE Alu -189 123 2 1849 165 10 14 chr9 110530874 110531171 -31740273 + AluJo SINE Alu 1 296 -16 765 163 74 22 chr9 110531172 110531307 -31740137 + FLAM_C SINE Alu 2 143 0 478 262 98 68 chr9 110532026 110532496 -31738948 + L1ME LINE L1 5317 5678 -443 331 326 39 11 chr9 110532611 110532792 -31738652 + MIR SINE MIR 20 205 -57 1010 237 71 34 chr9 110533200 110533609 -31737835 + MER113 DNA MER1_type? 95 518 -3 446 300 7 27 chr9 110533631 110533781 -31737663 - MIR3 SINE MIR -55 153 7 234 22 0 65 chr9 110533919 110533965 -31737479 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 382 297 25 109 chr9 110534646 110534929 -31736515 + L2 LINE L2 3014 3272 0 1171 211 18 0 chr9 110535005 110535232 -31736212 + Charlie1 DNA MER1_type 8 238 -2523 802 136 53 0 chr9 110535220 110535352 -31736092 + Charlie1 DNA MER1_type 2623 2761 0 * 292 298 145 0 chr9 110535361 110535492 -31735952 + MIR SINE MIR 22 171 -91 1862 116 7 18 chr9 110535494 110535770 -31735674 + AluSx SINE Alu 3 275 -37 218 236 0 56 chr9 110535832 110535904 -31735540 + MIR SINE MIR 167 234 -28 239 202 67 29 chr9 110536586 110536690 -31734754 - MIR3 SINE MIR -20 188 81 35 63 0 0 chr9 110536831 110536894 -31734550 + AT_rich Low_complexity Low_complexity 1 63 0 431 207 116 8 chr9 110536994 110537115 -31734329 + MIR SINE MIR 50 183 -79 1915 155 3 16 chr9 110537127 110537443 -31734001 + AluSx SINE Alu 1 312 0 218 266 85 21 chr9 110537556 110537650 -31733794 - MIR SINE MIR -147 115 16 1394 159 191 29 chr9 110537697 110538011 -31733433 + MLT1A1 LTR MaLR 1 365 0 641 217 0 23 chr9 110538613 110538742 -31732702 - FLAM_A SINE Alu -7 126 1 1856 134 47 10 chr9 110538771 110539070 -31732374 - AluY SINE Alu -1 310 1 1682 212 96 55 chr9 110539428 110539614 -31731830 - L1ME3A LINE L1 -17 6153 5976 2534 148 29 7 chr9 110539614 110540027 -31731417 + MSTB LTR MaLR 5 426 0 1682 212 96 55 chr9 110540027 110540122 -31731322 - L1ME3A LINE L1 -194 5976 5886 2431 109 11 3 chr9 110540122 110540471 -31730973 + THE1A LTR MaLR 1 352 -3 1682 212 96 55 chr9 110540471 110540735 -31730709 - L1ME3A LINE L1 -284 5886 5585 455 302 68 24 chr9 110541152 110541400 -31730044 + LTR33 LTR ERVL 19 277 -244 218 316 76 0 chr9 110541557 110541636 -31729808 + L2 LINE L2 3188 3272 0 563 256 189 18 chr9 110541736 110542017 -31729427 - MER102a DNA MER1_type 0 330 2 302 273 38 31 chr9 110542779 110542931 -31728513 + MIR SINE MIR 22 135 -73 782 345 57 9 chr9 110543256 110543714 -31727730 - L1MC4a LINE L1 -1956 5852 5373 345 304 29 14 chr9 110543769 110543907 -31727537 + MIR3 SINE MIR 6 145 -63 676 149 9 0 chr9 110543915 110544022 -31727422 + MLT1A2 LTR MaLR 1 108 -266 887 213 0 0 chr9 110544030 110544190 -31727254 + MLT1A2 LTR MaLR 215 374 0 947 261 168 6 chr9 110544294 110544616 -31726828 - MLT2B3 LTR ERVL -180 374 1 2280 89 3 3 chr9 110544778 110545069 -31726375 + AluSc SINE Alu 2 292 -17 541 286 7 0 chr9 110545577 110545717 -31725727 + MER5B DNA MER1_type 12 152 -26 2717 222 123 57 chr9 110546321 110547046 -31724398 - MER45B DNA AcHobo -267 773 1 435 287 136 60 chr9 110547062 110547339 -31724105 + L1ME4a LINE L1 5527 5781 -340 2289 110 24 42 chr9 110547339 110547721 -31723723 + THE1C LTR MaLR 1 375 0 435 287 136 60 chr9 110547721 110547979 -31723465 + L1ME4a LINE L1 5781 6103 -18 2492 88 41 0 chr9 110548236 110548577 -31722867 - THE1A LTR MaLR 0 355 1 432 158 95 0 chr9 110548732 110548827 -31722617 - L1MB2 LINE L1 0 6171 6068 884 138 0 48 chr9 110548843 110548985 -31722459 - L1MA10 LINE L1 0 6334 6200 2843 65 3 0 chr9 110548985 110549339 -31722105 - THE1A LTR MaLR 0 355 1 884 138 0 48 chr9 110549339 110549363 -31722081 - L1MA10 LINE L1 -134 6200 6176 351 0 0 0 chr9 110549376 110549415 -31722029 + (T)n Simple_repeat Simple_repeat 1 39 0 647 137 29 0 chr9 110549417 110549519 -31721925 - U6 snRNA snRNA -1 106 2 738 131 58 7 chr9 110549533 110549670 -31721774 - L1MB1 LINE L1 -6 6162 6019 2052 147 3 25 chr9 110549670 110549821 -31721623 + L1MB1 LINE L1 5568 5721 -447 1449 225 51 38 chr9 110549821 110550212 -31721232 - MSTD LTR MaLR 0 396 1 2052 147 3 25 chr9 110550212 110550420 -31721024 + L1MB1 LINE L1 5721 5919 -249 2466 64 0 3 chr9 110550918 110551213 -31720231 - AluY SINE Alu -17 294 1 1350 151 68 130 chr9 110551836 110552221 -31719223 - MER46B DNA MER2_type 0 236 1 191 277 13 119 chr9 110552273 110552314 -31719130 + MER5A DNA MER1_type 37 81 -108 2390 96 0 0 chr9 110552314 110552617 -31718827 + AluSx SINE Alu 1 303 -9 191 277 13 119 chr9 110552617 110552734 -31718710 + MER5A DNA MER1_type 81 178 -11 271 298 26 18 chr9 110552783 110552897 -31718547 + MIR SINE MIR 77 191 -71 603 288 49 0 chr9 110553263 110553468 -31717976 - MIR SINE MIR -1 261 47 576 168 11 0 chr9 110553476 110553571 -31717873 + AluJ/FLAM SINE Alu 5 100 -212 288 276 98 89 chr9 110553723 110553882 -31717562 + MER112 DNA MER1_type 1 164 -96 2384 103 0 6 chr9 110553882 110554193 -31717251 - AluSc SINE Alu 0 309 1 288 276 98 89 chr9 110554193 110554279 -31717165 + MER112 DNA MER1_type 164 248 -12 330 279 144 15 chr9 110554472 110554673 -31716771 + MIR SINE MIR 20 246 -16 186 254 90 0 chr9 110554925 110554992 -31716452 + MIR SINE MIR 123 195 -67 265 241 0 0 chr9 110555189 110555247 -31716197 + L2 LINE L2 3256 3313 0 253 240 25 107 chr9 110555299 110555420 -31716024 - Charlie8 DNA MER1_type 0 2417 231 1254 209 152 53 chr9 110555690 110556136 -31715308 + MLT1F1 LTR MaLR 3 488 -79 1878 157 0 20 chr9 110556631 110556930 -31714514 + AluJb SINE Alu 6 298 -14 238 292 77 30 chr9 110557470 110557638 -31713806 - L2 LINE L2 -914 2400 2225 417 218 35 2 chr9 110558915 110559031 -31712413 + MLT1J2 LTR MaLR 36 155 -292 452 241 145 60 chr9 110559031 110559197 -31712247 - MER5A DNA MER1_type -1 188 9 412 292 31 25 chr9 110559322 110559483 -31711961 + MLT1J2 LTR MaLR 282 443 -7 2272 74 0 0 chr9 110560158 110560457 -31710987 + L1PA8 LINE L1 5874 6172 0 207 200 0 0 chr9 110560997 110561032 -31710412 + T-rich Low_complexity Low_complexity 1 35 0 966 122 11 17 chr9 110561033 110561214 -31710230 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 213 39 0 0 chr9 110561220 110561246 -31710198 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 297 191 0 0 chr9 110561247 110561294 -31710150 - Alu SINE Alu -11 291 245 265 333 63 11 chr9 110561334 110561508 -31709936 + MIR SINE MIR 52 234 -28 357 301 51 34 chr9 110561552 110561728 -31709716 - MLT1J2 LTR MaLR 0 450 272 256 247 101 22 chr9 110561777 110561866 -31709578 - MLT1J LTR MaLR -313 198 103 283 237 93 106 chr9 110562546 110562779 -31708665 + MIR SINE MIR 3 233 -29 271 221 91 0 chr9 110562901 110562978 -31708466 - MIR SINE MIR -72 190 107 186 43 0 0 chr9 110563256 110563279 -31708165 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1752 193 3 10 chr9 110563281 110563586 -31707858 - 7SLRNA srpRNA srpRNA -17 303 1 524 289 138 6 chr9 110563620 110563779 -31707665 + MER5A DNA MER1_type 9 188 -1 2462 95 3 0 chr9 110563790 110564095 -31707349 - AluSx SINE Alu -6 306 1 4838 170 42 25 chr9 110564169 110564562 -31706882 - MER21B LTR ERV1 0 863 478 2427 100 33 25 chr9 110564562 110564923 -31706521 - THE1B LTR MaLR 0 364 1 4838 170 42 25 chr9 110564923 110565377 -31706067 - MER21B LTR ERV1 -385 478 1 1604 110 18 4 chr9 110565459 110565686 -31705758 + MER30 DNA MER1_type 1 230 0 384 272 68 0 chr9 110566251 110566398 -31705046 - MIR SINE MIR -65 197 41 221 361 16 16 chr9 110567017 110567139 -31704305 + MIR SINE MIR 16 137 -71 668 323 146 26 chr9 110567297 110567687 -31703757 - MLT1K LTR MaLR -27 561 125 1633 110 0 0 chr9 110569080 110569289 -31702155 + AluSx SINE Alu 1 209 -103 6341 115 267 36 chr9 110569289 110570667 -31700777 + pTR5 LTR ERV1 743 2438 0 631 124 21 0 chr9 110570670 110570767 -31700677 + AluSx SINE Alu 204 302 -8 238 268 16 8 chr9 110572269 110572392 -31699052 + GA-rich Low_complexity Low_complexity 2 125 0 205 265 103 15 chr9 110572392 110572460 -31698984 - MIR3 SINE MIR -24 184 111 201 167 0 0 chr9 110572530 110572566 -31698878 + T-rich Low_complexity Low_complexity 1 36 0 376 309 284 0 chr9 110573194 110573388 -31698056 - MIR SINE MIR -11 251 3 1902 150 10 10 chr9 110573571 110573878 -31697566 + AluJo SINE Alu 1 307 -5 544 309 33 29 chr9 110574650 110574893 -31696551 - MLT1J LTR MaLR -4 507 264 632 198 0 17 chr9 110575597 110575713 -31695731 - MER94 DNA DNA -17 117 4 33 0 0 0 chr9 110576267 110576300 -31695144 + AT_rich Low_complexity Low_complexity 1 33 0 232 127 36 0 chr9 110576865 110576920 -31694524 + (TA)n Simple_repeat Simple_repeat 2 58 0 266 250 105 0 chr9 110577043 110577119 -31694325 + MIR SINE MIR 117 200 -62 1887 154 3 7 chr9 110577331 110577623 -31693821 + AluJb SINE Alu 1 291 -21 396 167 0 0 chr9 110578145 110578217 -31693227 + CT-rich Low_complexity Low_complexity 2 73 0 2290 69 0 0 chr9 110578217 110578492 -31692952 - AluY SINE Alu -36 275 1 863 76 0 17 chr9 110578823 110578941 -31692503 + AluY SINE Alu 177 292 -19 234 152 0 0 chr9 110578949 110578995 -31692449 + L2 LINE L2 3268 3313 0 252 336 63 28 chr9 110579190 110579333 -31692111 - MIR SINE MIR -112 150 3 355 315 64 20 chr9 110579587 110579790 -31691654 - MIR SINE MIR -11 251 40 5531 135 19 22 chr9 110579813 110579931 -31691513 - L1MA4 LINE L1 0 6300 6183 1732 174 24 7 chr9 110579931 110580224 -31691220 - AluJb SINE Alu -8 304 7 5531 135 19 22 chr9 110580224 110581054 -31690390 - L1MA4 LINE L1 -117 6183 5355 208 222 0 0 chr9 110581054 110581090 -31690354 + polypyrimidine Low_complexity Low_complexity 3 38 0 669 198 56 0 chr9 110581100 110581226 -31690218 - FLAM_A SINE Alu 0 133 1 7910 171 29 3 chr9 110581228 110582704 -31688740 - L1MA4 LINE L1 -775 5371 3859 231 146 0 0 chr9 110582942 110582983 -31688461 - L2 LINE L2 -1 3312 3272 1570 197 33 7 chr9 110583021 110583325 -31688119 + AluJb SINE Alu 1 312 0 731 158 8 0 chr9 110583387 110583514 -31687930 - L1MB7 LINE L1 -10 6174 6047 525 302 56 9 chr9 110583552 110583767 -31687677 - L2 LINE L2 -208 3105 2881 1718 184 3 10 chr9 110583770 110584075 -31687369 + AluJb SINE Alu 1 303 -9 300 258 80 56 chr9 110586725 110586906 -31684538 - MIR SINE MIR -56 206 16 2196 118 0 0 chr9 110587066 110587353 -31684091 + AluSx SINE Alu 1 287 -25 2370 112 0 3 chr9 110588760 110589072 -31682372 + AluSq SINE Alu 1 311 -2 1915 235 12 34 chr9 110589177 110589680 -31681764 + L1ME2 LINE L1 5641 6132 -32 45 0 0 0 chr9 110589715 110589760 -31681684 + AT_rich Low_complexity Low_complexity 1 45 0 1928 121 4 4 chr9 110589763 110590028 -31681416 - AluSq SINE Alu -48 265 1 1072 161 0 0 chr9 110590031 110590192 -31681252 - AluJb SINE Alu -18 294 134 213 296 48 32 chr9 110590561 110590686 -31680758 - L2 LINE L2 -1018 2296 2170 2006 126 37 0 chr9 110590757 110591051 -31680393 + AluSx SINE Alu 1 305 -7 460 245 84 14 chr9 110591386 110591529 -31679915 + MIR SINE MIR 100 252 -10 273 138 52 0 chr9 110591668 110591726 -31679718 - L1MD3 LINE L1 -13 7982 7922 195 191 85 0 chr9 110591905 110591952 -31679492 - L2 LINE L2 -25 3247 3197 185 279 0 0 chr9 110591976 110592019 -31679425 - L2 LINE L2 -37 3276 3234 2286 108 0 3 chr9 110592242 110592538 -31678906 + AluSg SINE Alu 1 295 -15 231 284 185 0 chr9 110593203 110593284 -31678160 + L2 LINE L2 3154 3249 -23 2331 118 46 0 chr9 110594195 110594543 -31676901 + THE1B LTR MaLR 1 364 0 309 244 76 25 chr9 110594550 110594638 -31676806 + LTR37B LTR ERV1 313 410 -58 192 40 0 0 chr9 110594638 110594663 -31676781 + (TG)n Simple_repeat Simple_repeat 2 26 0 309 244 76 25 chr9 110594663 110594693 -31676751 + LTR37B LTR ERV1 410 437 -31 654 206 0 37 chr9 110594693 110594829 -31676615 - FLAM_C SINE Alu -5 138 8 209 309 36 0 chr9 110595170 110595225 -31676219 + L2 LINE L2 3153 3209 -63 243 125 0 0 chr9 110595260 110595300 -31676144 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 795 152 0 43 chr9 110596046 110596184 -31675260 - FLAM_C SINE Alu 0 143 12 1634 208 50 5 chr9 110596195 110596575 -31674869 - LTR37A LTR ERV1 -26 400 4 1873 173 3 3 chr9 110596750 110597062 -31674382 - AluJb SINE Alu 0 312 1 291 257 0 0 chr9 110597219 110597289 -31674155 + MIR SINE MIR 65 134 -128 1080 141 0 6 chr9 110597290 110597453 -31673991 - FAM SINE Alu 0 49 1 771 163 0 35 chr9 110597495 110597636 -31673808 + FLAM_C SINE Alu 2 137 -6 300 111 0 0 chr9 110597636 110597681 -31673763 + (CAATA)n Simple_repeat Simple_repeat 5 49 0 187 250 38 25 chr9 110597823 110597903 -31673541 - L2 LINE L2 -656 2658 2578 377 261 51 36 chr9 110598232 110598370 -31673074 - MIR SINE MIR -27 235 96 1739 107 67 63 chr9 110598729 110599029 -31672415 - AluSc SINE Alu -8 301 1 830 137 0 50 chr9 110599405 110599544 -31671900 + FLAM_C SINE Alu 2 133 0 192 135 0 0 chr9 110600442 110600479 -31670965 + (A)n Simple_repeat Simple_repeat 1 37 0 2386 96 0 0 chr9 110600805 110601108 -31670336 + AluSx SINE Alu 1 303 -9 248 180 0 0 chr9 110601146 110601196 -31670248 - Alu SINE Alu -3 297 248 1397 122 111 11 chr9 110601730 110601992 -31669452 - AluSx SINE Alu -24 288 1 1169 118 118 33 chr9 110602347 110602559 -31668885 + MER30 DNA MER1_type 1 230 0 232 342 58 0 chr9 110603345 110603465 -31667979 + L2 LINE L2 3144 3270 -2 194 333 48 0 chr9 110603634 110603718 -31667726 - MIR3 SINE MIR -23 185 98 313 263 12 12 chr9 110603800 110603880 -31667564 + MIR SINE MIR 1 80 -182 335 70 123 0 chr9 110603880 110603937 -31667507 - MER57A LTR ERV1 0 403 340 2805 179 23 21 chr9 110603942 110604499 -31666945 - MER57A-int LTR ERV1 -2055 5482 4922 2136 100 21 10 chr9 110604499 110604788 -31666656 - AluSc SINE Alu -17 292 1 2805 179 23 21 chr9 110604788 110604806 -31666638 - MER57A-int LTR ERV1 -2615 4922 4906 1190 154 12 130 chr9 110604803 110605085 -31666359 - MER57A-int LTR ERV1 -3622 4498 4263 * 1617 165 0 75 chr9 110605085 110605406 -31666038 + AluJo SINE Alu 5 301 -11 1190 154 12 130 chr9 110605406 110605468 -31665976 - MER57A-int LTR ERV1 -3857 4263 4195 428 216 0 50 chr9 110605586 110605725 -31665719 - MER57A-int LTR ERV1 -3674 3084 2953 2198 118 0 13 chr9 110606047 110606351 -31665093 - AluSx SINE Alu -12 300 1 671 195 29 56 chr9 110606576 110606780 -31664664 - MER57A-int LTR ERV1 -2954 2889 2681 703 195 23 8 chr9 110606780 110606908 -31664536 + FLAM_C SINE Alu 2 131 -2 671 195 29 56 chr9 110606908 110607137 -31664307 - MER57A-int LTR ERV1 -3162 2681 1733 476 247 0 0 chr9 110607251 110607344 -31664100 - MER57A-int LTR ERV1 -2878 3453 3361 355 161 12 49 chr9 110607399 110607480 -31663964 - MER57A-int LTR ERV1 -2990 3341 3264 976 148 9 86 chr9 110607532 110607742 -31663702 - MER57A-int LTR ERV1 -3059 3272 3079 376 165 5 100 chr9 110607754 110607890 -31663554 - MER57A-int LTR ERV1 -3724 1399 1297 * 394 257 34 27 chr9 110607862 110608010 -31663434 - MER57A-int LTR ERV1 -4616 1982 1834 627 226 111 32 chr9 110608010 110608227 -31663217 - MER34C LTR ERV1 -177 408 175 505 272 27 28 chr9 110608237 110608425 -31663019 - MER57A-int LTR ERV1 -4123 3414 841 1848 151 64 75 chr9 110608506 110608840 -31662604 - MER57A-int LTR ERV1 -6705 832 503 2293 142 12 0 chr9 110608840 110609179 -31662265 - MER61A LTR ERV1 0 343 1 1848 151 64 75 chr9 110609179 110609268 -31662176 - MER57A-int LTR ERV1 -7034 503 414 547 188 31 0 chr9 110609268 110609364 -31662080 - MER57A LTR ERV1 -194 209 111 381 291 8 0 chr9 110609370 110609487 -31661957 + MIR SINE MIR 82 199 -63 242 168 5 66 chr9 110609567 110609580 -31661864 - L1M3 LINE L1 -375 5793 5781 2257 106 0 0 chr9 110609580 110609864 -31661580 - AluSc SINE Alu -25 284 1 242 168 5 66 chr9 110609864 110609917 -31661527 - L1M3 LINE L1 -387 5781 5728 1655 242 22 19 chr9 110609949 110610313 -31661131 - MER57A-int LTR ERV1 -7147 390 26 562 284 46 10 chr9 110610313 110610338 -31661106 + MIR SINE MIR 53 76 -186 2258 152 2 45 chr9 110610338 110610661 -31660783 - MER57A LTR ERV1 0 403 101 1735 154 0 63 chr9 110610661 110610980 -31660464 - AluSg SINE Alu -11 299 1 2258 152 2 45 chr9 110610980 110611077 -31660367 - MER57A LTR ERV1 -302 101 1 562 284 46 10 chr9 110611077 110611248 -31660196 + MIR SINE MIR 76 256 -6 1710 242 78 45 chr9 110611563 110612167 -31659277 + MLT1G LTR MaLR 1 590 0 213 343 20 48 chr9 110612670 110612715 -31658729 - MIR3 SINE MIR -62 146 101 2082 109 10 13 chr9 110612715 110613017 -31658427 + AluSx SINE Alu 1 301 -11 213 343 20 48 chr9 110613017 110613117 -31658327 - MIR3 SINE MIR -107 101 5 577 269 0 27 chr9 110613380 110613529 -31657915 + MER63A DNA MER1_type 58 202 -8 201 308 30 30 chr9 110614467 110614600 -31656844 + L2 LINE L2 2925 3057 -215 264 258 100 25 chr9 110614651 110614771 -31656673 + MIR SINE MIR 25 153 -55 314 278 74 9 chr9 110617941 110618049 -31653395 + MIR SINE MIR 32 146 -62 2240 109 0 0 chr9 110618054 110618348 -31653096 + AluSc SINE Alu 1 294 -15 729 169 76 23 chr9 110618472 110618543 -31652901 + MER53 DNA DNA 2 68 -121 234 0 0 0 chr9 110618543 110618569 -31652875 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 729 169 76 23 chr9 110618569 110618669 -31652775 + MER53 DNA DNA 68 182 -7 21 36 0 0 chr9 110618859 110618887 -31652557 + AT_rich Low_complexity Low_complexity 1 28 0 189 143 32 16 chr9 110618889 110618952 -31652492 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 180 297 119 42 chr9 110620305 110620423 -31651021 - L2 LINE L2 -1 3271 3145 251 208 0 0 chr9 110621269 110621322 -31650122 + L2 LINE L2 3261 3313 0 2272 106 0 10 chr9 110621717 110622018 -31649426 + AluSx SINE Alu 1 298 -14 413 239 11 0 chr9 110622475 110622567 -31648877 + MLT1C LTR MaLR 374 466 -1 450 258 60 38 chr9 110622952 110623219 -31648225 - L1ME4a LINE L1 -266 5855 5583 742 185 0 0 chr9 110623253 110623499 -31647945 - AluJb SINE Alu 0 428 183 648 162 0 0 chr9 110623531 110623630 -31647814 - AluJb SINE Alu -130 182 84 705 211 45 57 chr9 110623652 110623899 -31647545 - L1MA9 LINE L1 -30 6282 6039 329 323 43 12 chr9 110626337 110626498 -31644946 + MIR SINE MIR 91 256 -6 1035 174 24 14 chr9 110628549 110628756 -31642688 - Tigger2a DNA MER2_type -35 409 201 1150 164 212 8 chr9 110628756 110629006 -31642438 + AluY SINE Alu 1 301 -10 1129 149 24 48 chr9 110629008 110629216 -31642228 - Tigger2a DNA MER2_type -231 203 1 286 222 0 0 chr9 110629452 110629506 -31641938 + MIR SINE MIR 93 146 -62 549 175 41 0 chr9 110629516 110629613 -31641831 + AluJb SINE Alu 6 106 -206 2325 107 0 0 chr9 110629658 110629957 -31641487 + AluSg SINE Alu 1 299 -11 2864 186 42 0 chr9 110630152 110630652 -31640792 + Tigger7 DNA MER2_type 2 522 -1965 380 148 0 0 chr9 110630664 110630725 -31640719 + Tigger7 DNA MER2_type 2527 2587 0 230 188 16 62 chr9 110630770 110630834 -31640610 - MIR SINE MIR -70 192 132 2640 101 3 8 chr9 110632414 110632779 -31638665 + THE1B LTR MaLR 1 363 -1 2266 97 14 0 chr9 110633660 110633949 -31637495 + AluSx SINE Alu 1 293 -19 316 22 0 43 chr9 110633975 110634021 -31637423 + L1PA10 LINE L1 6125 6168 0 735 179 20 151 chr9 110634067 110634146 -31637298 - MER20 DNA MER1_type 0 219 131 1977 128 0 30 chr9 110634146 110634450 -31636994 - AluJb SINE Alu -17 295 1 735 179 20 151 chr9 110634450 110634622 -31636822 - MER20 DNA MER1_type -88 131 1 353 292 62 21 chr9 110634658 110634802 -31636642 + MIR SINE MIR 34 183 -79 180 0 0 0 chr9 110635099 110635119 -31636325 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 396 0 0 0 chr9 110635908 110635952 -31635492 + (TG)n Simple_repeat Simple_repeat 1 44 0 265 291 29 0 chr9 110636328 110636431 -31635013 + L2 LINE L2 2211 2316 -998 734 178 8 0 chr9 110637103 110637232 -31634212 + FRAM SINE Alu 2 131 -45 758 260 91 0 chr9 110637776 110637995 -31633449 - MIR SINE MIR -21 241 3 1885 164 31 36 chr9 110638273 110638633 -31632811 - MLT1A1 LTR MaLR -3 362 5 978 287 98 3 chr9 110638812 110639147 -31632297 - MLT2E LTR ERVL -261 367 1 21 0 0 0 chr9 110639162 110639183 -31632261 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 110640080 110640116 -31631328 + AT_rich Low_complexity Low_complexity 1 36 0 1722 132 0 0 chr9 110640126 110640369 -31631075 + AluSx SINE Alu 64 306 -6 290 269 170 35 chr9 110640631 110640772 -31630672 + MIR SINE MIR 89 248 -14 219 330 0 34 chr9 110641554 110641672 -31629772 + CT-rich Low_complexity Low_complexity 2 115 0 505 318 61 30 chr9 110642470 110642832 -31628612 - L3 LINE CR1 -53 1524 1152 2256 116 3 3 chr9 110642968 110643279 -31628165 - AluSp SINE Alu -2 311 1 2222 105 0 0 chr9 110643281 110643558 -31627886 - AluSq SINE Alu -21 292 16 331 236 159 82 chr9 110644481 110644559 -31626885 - L1MC/D LINE L1 -352 5769 5698 2241 202 71 58 chr9 110644559 110645036 -31626408 - MLT1E2 LTR MaLR 0 626 157 2582 49 0 3 chr9 110645036 110645341 -31626103 - AluY SINE Alu -3 308 5 1691 65 0 5 chr9 110645343 110645544 -31625900 - AluY SINE Alu -111 200 1 2241 202 71 58 chr9 110645544 110645681 -31625763 - MLT1E2 LTR MaLR -469 157 1 331 236 159 82 chr9 110645681 110645900 -31625544 - L1MC/D LINE L1 -423 5698 5567 212 209 12 47 chr9 110645934 110646020 -31625424 + (TTA)n Simple_repeat Simple_repeat 2 84 0 671 282 44 0 chr9 110646188 110646369 -31625075 - MER63A DNA MER1_type 0 210 22 272 346 26 19 chr9 110646542 110646698 -31624746 + MIR SINE MIR 35 191 -71 192 121 0 0 chr9 110647043 110647076 -31624368 - L2 LINE L2 -2 3311 3279 324 286 36 0 chr9 110647155 110647267 -31624177 - MIR SINE MIR -73 189 74 2378 81 0 3 chr9 110647885 110648181 -31623263 - AluY SINE Alu -16 295 1 231 242 32 0 chr9 110648285 110648347 -31623097 + MIR SINE MIR 124 187 -75 2035 125 3 3 chr9 110648399 110648686 -31622758 + AluSx SINE Alu 1 287 -25 28 29 0 0 chr9 110648689 110648724 -31622720 + AT_rich Low_complexity Low_complexity 1 35 0 232 180 80 0 chr9 110648748 110648798 -31622646 + L2 LINE L2 3210 3263 -9 186 333 0 23 chr9 110649021 110649108 -31622336 - MIR SINE MIR -119 143 59 252 280 45 76 chr9 110649544 110649676 -31621768 + L2 LINE L2 3179 3306 -7 1023 168 22 16 chr9 110650301 110650486 -31620958 - MER5A DNA MER1_type 0 189 4 1609 169 20 37 chr9 110650903 110651199 -31620245 - AluJo SINE Alu -21 291 1 192 77 0 0 chr9 110651323 110651349 -31620095 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 763 205 7 7 chr9 110651367 110651518 -31619926 + FRAM SINE Alu 10 160 -16 21 0 0 0 chr9 110652050 110652071 -31619373 + AT_rich Low_complexity Low_complexity 1 21 0 737 243 29 15 chr9 110652133 110652339 -31619105 + L1ME3 LINE L1 5892 6100 -62 537 221 37 15 chr9 110652417 110652553 -31618891 + L1ME LINE L1 5684 5822 -348 1837 124 6 91 chr9 110652585 110652935 -31618509 + AluSx SINE Alu 1 312 0 427 275 28 14 chr9 110654231 110654373 -31617071 + MIR3 SINE MIR 16 159 -49 1296 111 0 0 chr9 110654663 110654835 -31616609 + AluSg/x SINE Alu 139 310 0 1851 132 7 4 chr9 110655404 110655704 -31615740 + AluSq SINE Alu 11 311 0 488 235 31 25 chr9 110655773 110655935 -31615509 - MER103 DNA DNA 0 166 4 880 127 0 15 chr9 110656460 110656594 -31614850 - AluSg/x SINE Alu -20 290 159 1779 242 72 13 chr9 110657106 110657743 -31613701 + L1ME2 LINE L1 2371 3045 -3101 2077 238 30 10 chr9 110657750 110658250 -31613194 - LTR40a LTR ERVL -9 510 1 708 261 102 6 chr9 110658259 110658584 -31612860 + L1ME2 LINE L1 3052 3407 -2739 2009 215 31 53 chr9 110658603 110659111 -31612333 - MLT1D LTR MaLR -6 499 3 633 261 46 25 chr9 110659136 110659398 -31612046 + L1ME2 LINE L1 3438 3710 -2436 281 210 16 16 chr9 110659398 110659460 -31611984 - MER81 DNA DNA 0 114 53 1239 264 31 33 chr9 110659483 110659903 -31611541 + L1ME2 LINE L1 3705 4123 -2023 1583 266 117 6 chr9 110659922 110660670 -31610774 + L1ME2 LINE L1 4387 5264 -882 1916 168 93 103 chr9 110660670 110660996 -31610448 - MLT2B1 LTR ERVL 0 520 199 2132 114 0 0 chr9 110660996 110661286 -31610158 - AluSg1 SINE Alu -19 290 1 1916 168 93 103 chr9 110661286 110661484 -31609960 - MLT2B1 LTR ERVL -321 199 1 213 211 0 0 chr9 110661513 110661551 -31609893 + (CCTA)n Simple_repeat Simple_repeat 1 38 0 2895 193 28 105 chr9 110661552 110662506 -31608938 + L1ME2 LINE L1 5280 6160 -4 1715 190 35 3 chr9 110663767 110664083 -31607361 + MER58B DNA MER1_type 1 326 -15 264 318 35 0 chr9 110664369 110664454 -31606990 - 5S rRNA rRNA -33 88 1 479 325 48 14 chr9 110665251 110665460 -31605984 - L3 LINE CR1 -75 1502 1287 1485 204 44 98 chr9 110665538 110666088 -31605356 - Charlie1b DNA MER1_type -1 522 3 205 309 191 8 chr9 110667191 110667317 -31604127 - MIR SINE MIR -13 249 101 855 144 15 75 chr9 110667317 110667346 -31604098 - MER53 DNA DNA 0 189 160 2288 120 0 3 chr9 110667346 110667655 -31603789 + AluSx SINE Alu 1 308 -4 855 144 15 75 chr9 110667655 110667826 -31603618 - MER53 DNA DNA -29 160 1 191 295 82 0 chr9 110668064 110668125 -31603319 + L2 LINE L2 3149 3214 -58 1052 170 26 5 chr9 110669139 110669333 -31602111 + MER3 DNA MER1_type 6 203 -6 1623 138 4 0 chr9 110669540 110669772 -31601672 - AluSx SINE Alu -79 233 1 1924 139 23 20 chr9 110669993 110670294 -31601150 + AluSx SINE Alu 1 302 -10 1440 173 58 25 chr9 110670697 110670821 -31600623 + AluJb SINE Alu 1 120 -192 228 35 0 0 chr9 110670821 110670850 -31600594 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1440 173 58 25 chr9 110670850 110671002 -31600442 + AluJb SINE Alu 120 286 -26 265 343 167 5 chr9 110671027 110671231 -31600213 - MIR SINE MIR -6 256 20 231 114 0 0 chr9 110671579 110671614 -31599830 + (TG)n Simple_repeat Simple_repeat 1 35 0 404 283 82 8 chr9 110672588 110672776 -31598668 - MLT1I LTR MaLR -199 210 1 398 308 54 18 chr9 110672868 110673044 -31598400 + MIR3 SINE MIR 3 182 -47 488 258 81 108 chr9 110673419 110673837 -31597607 - MLT1I LTR MaLR 0 409 3 228 381 0 8 chr9 110673975 110674093 -31597351 + L2 LINE L2 2920 3036 -236 22 0 0 0 chr9 110674110 110674132 -31597312 + AT_rich Low_complexity Low_complexity 1 22 0 1991 211 0 14 chr9 110674615 110674985 -31596459 + MLT1A1 LTR MaLR 1 365 0 347 293 63 54 chr9 110675289 110675494 -31595950 - MIR SINE MIR -6 256 50 180 253 101 38 chr9 110675814 110675893 -31595551 - MIR SINE MIR -71 137 54 185 281 47 0 chr9 110676020 110676084 -31595360 + MIR SINE MIR 126 192 -70 1788 176 0 6 chr9 110676112 110676425 -31595019 + AluJb SINE Alu 1 311 -1 210 322 0 78 chr9 110677189 110677304 -31594140 - MIR SINE MIR -58 150 77 362 316 77 8 chr9 110677425 110677542 -31593902 - MIR SINE MIR -128 134 10 322 224 71 20 chr9 110677941 110678039 -31593405 - MIR SINE MIR -109 153 51 205 400 48 9 chr9 110679260 110679365 -31592079 + MIR3 SINE MIR 15 123 -85 220 336 37 9 chr9 110679610 110679717 -31591727 - MIR SINE MIR -62 146 37 2918 140 9 0 chr9 110679882 110680304 -31591140 + MSTA LTR MaLR 1 426 -2 228 313 75 0 chr9 110681633 110681713 -31589731 - L2 LINE L2 -1 3271 3186 631 224 51 13 chr9 110681967 110682123 -31589321 + MLT1E LTR MaLR 1 162 -431 1869 163 52 47 chr9 110682317 110682680 -31588764 + MLT1A1 LTR MaLR 1 365 0 201 74 0 0 chr9 110683017 110683044 -31588400 + (A)n Simple_repeat Simple_repeat 1 27 0 289 295 107 36 chr9 110683667 110683779 -31587665 - L2 LINE L2 0 3272 3153 261 98 0 0 chr9 110684248 110684289 -31587155 + (TA)n Simple_repeat Simple_repeat 1 41 0 1042 264 117 29 chr9 110684328 110684805 -31586639 + LTR33 LTR ERVL 1 519 -2 23 0 0 0 chr9 110684962 110684985 -31586459 + AT_rich Low_complexity Low_complexity 1 23 0 1984 150 3 6 chr9 110684995 110685308 -31586136 + AluJb SINE Alu 1 312 0 228 333 47 107 chr9 110685572 110685872 -31585572 + L2 LINE L2 2980 3261 -11 315 315 54 13 chr9 110685899 110686048 -31585396 - MIR3 SINE MIR -3 205 51 189 196 0 0 chr9 110686607 110686653 -31584791 + CT-rich Low_complexity Low_complexity 1 46 0 219 114 0 0 chr9 110687256 110687291 -31584153 + (TG)n Simple_repeat Simple_repeat 2 36 0 478 313 43 6 chr9 110687319 110687482 -31583962 + Charlie8 DNA MER1_type 107 275 -2142 229 311 38 28 chr9 110687686 110687792 -31583652 - L2 LINE L2 -60 3253 3147 1851 228 37 43 chr9 110687877 110688385 -31583059 - MLT1D LTR MaLR 0 505 1 465 262 137 69 chr9 110688390 110688798 -31582646 - MLT1J2 LTR MaLR 0 450 15 225 233 14 14 chr9 110689138 110689211 -31582233 + (TA)n Simple_repeat Simple_repeat 1 73 0 325 208 48 88 chr9 110689265 110689390 -31582054 + L1MC4 LINE L1 6613 6732 -1310 393 381 52 43 chr9 110689426 110689868 -31581576 - L2 LINE L2 -617 2697 2260 1869 132 3 31 chr9 110689868 110690157 -31581287 + AluSx SINE Alu 21 301 -11 393 381 52 43 chr9 110690157 110690603 -31580841 - L2 LINE L2 -1054 2260 1801 330 296 9 9 chr9 110691115 110691223 -31580221 + MIR SINE MIR 149 256 -6 258 250 119 12 chr9 110691462 110691546 -31579898 + MIR SINE MIR 60 152 -56 227 301 66 44 chr9 110692398 110692534 -31578910 - MIR3 SINE MIR -4 204 66 271 311 143 25 chr9 110692565 110692726 -31578718 - MIR SINE MIR -12 250 71 242 308 12 4 chr9 110693054 110693149 -31578295 - MLT1K LTR MaLR -339 249 140 1613 158 54 158 chr9 110693178 110693698 -31577746 + MER110A LTR ERV1 3 468 0 337 316 65 42 chr9 110694105 110694320 -31577124 + MIR SINE MIR 13 232 -30 318 345 41 25 chr9 110694545 110694729 -31576715 + MIR SINE MIR 5 190 -70 399 41 0 0 chr9 110695859 110695908 -31575536 + (TG)n Simple_repeat Simple_repeat 2 50 0 207 100 0 0 chr9 110696121 110696151 -31575293 + (T)n Simple_repeat Simple_repeat 1 30 0 782 215 29 19 chr9 110696314 110696523 -31574921 - L1MEd LINE L1 -5014 1105 895 499 304 80 27 chr9 110696676 110697012 -31574432 - L1MEd LINE L1 -5187 932 579 21 0 0 0 chr9 110697016 110697037 -31574407 + AT_rich Low_complexity Low_complexity 1 21 0 234 231 39 0 chr9 110697277 110697329 -31574115 - L1MEd LINE L1 -5738 381 328 528 138 28 64 chr9 110697507 110697616 -31573828 + L1 LINE L1 4103 4207 -1939 2122 115 7 3 chr9 110697657 110697945 -31573499 + AluSx SINE Alu 1 289 -23 311 0 0 25 chr9 110697949 110697989 -31573455 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2568 155 24 0 chr9 110698018 110698443 -31573001 + L1MD1 LINE L1 5808 6242 0 238 287 62 70 chr9 110699111 110699240 -31572204 - MIR3 SINE MIR -67 141 14 284 323 247 11 chr9 110699356 110699542 -31571902 + MIR SINE MIR 20 249 -13 226 336 80 26 chr9 110699887 110700000 -31571444 + L2 LINE L2 3172 3290 -23 767 255 27 0 chr9 110700841 110701029 -31570415 - L2 LINE L2 -246 3067 2875 32 26 0 0 chr9 110701041 110701080 -31570364 + AT_rich Low_complexity Low_complexity 1 39 0 567 309 50 27 chr9 110701128 110701387 -31570057 - L2 LINE L2 -448 2866 2602 191 354 106 12 chr9 110701611 110701772 -31569672 + MIR SINE MIR 81 256 -6 317 247 72 21 chr9 110701962 110702059 -31569385 + L2 LINE L2 3208 3309 -4 2146 118 9 19 chr9 110702228 110702543 -31568901 - AluSx SINE Alu 0 312 1 2121 94 0 14 chr9 110702556 110702869 -31568575 - AluSc SINE Alu 0 309 1 244 252 4 52 chr9 110703524 110703657 -31567787 - L1ME2 LINE L1 -231 5939 5812 469 127 0 51 chr9 110703724 110703803 -31567641 - AluJb SINE Alu -12 300 226 954 119 0 8 chr9 110703822 110703956 -31567488 - AluJb SINE Alu -179 133 1 403 284 74 0 chr9 110703960 110704108 -31567336 + MIR SINE MIR 103 261 -1 1144 164 23 0 chr9 110704346 110704517 -31566927 + FAM SINE Alu 1 175 0 183 329 167 40 chr9 110705397 110705625 -31565819 - L2 LINE L2 -191 3081 2825 2234 114 0 7 chr9 110706032 110706338 -31565106 + AluSg SINE Alu 1 304 -6 359 254 23 62 chr9 110706857 110707034 -31564410 - L1ME4a LINE L1 -8 6113 5944 1549 226 27 24 chr9 110707924 110708296 -31563148 - L1MB8 LINE L1 -6 6172 5800 404 247 75 48 chr9 110708311 110708457 -31562987 + LTR67 LTR ERVL 408 557 0 202 278 0 19 chr9 110708614 110708668 -31562776 + MIR3 SINE MIR 151 203 -5 330 263 39 78 chr9 110709738 110709943 -31561501 - Charlie7 DNA MER1_type -1 2611 2415 243 235 73 15 chr9 110709919 110709987 -31561457 - Charlie7 DNA MER1_type -2516 96 25 * 21 57 0 0 chr9 110710352 110710387 -31561057 + AT_rich Low_complexity Low_complexity 1 35 0 357 308 47 52 chr9 110710393 110710609 -31560835 - MIR SINE MIR -41 221 8 207 270 54 63 chr9 110710706 110710817 -31560627 + MIR SINE MIR 108 217 -45 192 271 65 19 chr9 110711009 110711116 -31560328 - MIR3 SINE MIR -32 176 65 5119 45 3 4 chr9 110711439 110712338 -31559106 - L1PA4 LINE L1 -276 5879 4980 1228 29 88 0 chr9 110712337 110712541 -31558903 + L1PA4 LINE L1 4244 4465 -1681 * 1573 48 0 0 chr9 110712641 110712829 -31558615 - L1P1 LINE L1 -544 5611 5424 3555 28 0 0 chr9 110712829 110713204 -31558240 + L1PA4 LINE L1 5755 6144 -11 540 193 0 0 chr9 110713206 110713325 -31558119 + (TA)n Simple_repeat Simple_repeat 2 120 0 565 306 60 34 chr9 110714166 110714516 -31556928 - L1M4 LINE L1 -991 5155 4797 2953 158 35 6 chr9 110714673 110715159 -31556285 + THE1-int LTR MaLR 427 926 -654 1142 103 0 17 chr9 110715191 110715366 -31556078 + HERVH LTR ERV1 859 1030 -6683 24 0 0 0 chr9 110715582 110715606 -31555838 + AT_rich Low_complexity Low_complexity 1 24 0 229 203 38 38 chr9 110715673 110715752 -31555692 + L1P LINE L1 2141 2219 -3927 409 251 175 14 chr9 110715874 110716229 -31555215 + L1 LINE L1 2675 3086 -3060 1577 205 3 0 chr9 110717002 110717285 -31554159 + AluJo SINE Alu 11 294 -18 24 53 0 0 chr9 110717565 110717603 -31553841 + AT_rich Low_complexity Low_complexity 1 38 0 1151 263 72 10 chr9 110718107 110718620 -31552824 - L1M4 LINE L1 -3174 2972 2428 356 329 26 26 chr9 110718771 110718926 -31552518 - MLT1J LTR MaLR -204 307 153 289 287 73 37 chr9 110719010 110719174 -31552270 - L2 LINE L2 -1529 1785 1616 3849 139 81 127 chr9 110719339 110720373 -31551071 - MER52C LTR ERV1 -291 987 1 4118 210 34 16 chr9 110720842 110721946 -31549498 + L1 LINE L1 3042 4165 -1981 3692 216 48 3 chr9 110722050 110723400 -31548044 - L1MC1 LINE L1 -204 6198 4783 1153 156 110 94 chr9 110723638 110724010 -31547434 + L1M2 LINE L1 5398 5775 -525 3985 193 28 11 chr9 110724015 110725024 -31546420 + L1 LINE L1 4242 5267 -879 289 296 10 0 chr9 110725129 110725227 -31546217 - L1MC1 LINE L1 -4364 2032 1934 583 298 57 32 chr9 110725269 110725641 -31545803 - L1ME1 LINE L1 -4 6162 5782 2141 76 0 21 chr9 110725666 110725988 -31545456 + AluY SINE Alu 1 316 0 347 239 77 8 chr9 110726555 110726672 -31544772 + MLT1I LTR MaLR 31 155 -254 1968 155 7 0 chr9 110726879 110727183 -31544261 + AluSx SINE Alu 1 306 -6 311 311 138 22 chr9 110728332 110728557 -31542887 - MIR SINE MIR -2 260 10 942 236 30 12 chr9 110728621 110728913 -31542531 + MLT1B LTR MaLR 1 349 -118 2370 248 34 8 chr9 110728917 110729686 -31541758 + L1 LINE L1 4245 5033 -1113 234 0 0 0 chr9 110729871 110729897 -31541547 + (CA)n Simple_repeat Simple_repeat 1 26 0 205 222 19 0 chr9 110730256 110730310 -31541134 + (TA)n Simple_repeat Simple_repeat 2 56 0 1129 233 124 9 chr9 110730310 110730536 -31540908 - MLT2B3 LTR ERVL -56 498 219 2372 112 42 3 chr9 110730536 110730893 -31540551 - THE1C LTR MaLR -2 373 3 1129 233 124 9 chr9 110730893 110731005 -31540439 - MLT2B3 LTR ERVL -335 219 121 1687 188 14 3 chr9 110731305 110731593 -31539851 + AluJb SINE Alu 1 291 -21 23 0 0 0 chr9 110731593 110731616 -31539828 + AT_rich Low_complexity Low_complexity 1 23 0 195 315 45 56 chr9 110732083 110732172 -31539272 - L3 LINE CR1 -70 1507 1420 3648 170 32 21 chr9 110732530 110732764 -31538680 - L1PB4 LINE L1 -105 6108 5878 2265 88 10 0 chr9 110732764 110733060 -31538384 - AluY SINE Alu -12 299 1 3648 170 32 21 chr9 110733060 110733735 -31537709 - L1PB4 LINE L1 -335 5878 5191 2460 41 17 0 chr9 110733737 110734030 -31537414 - AluY SINE Alu -13 298 1 24 32 0 0 chr9 110734031 110734062 -31537382 + AT_rich Low_complexity Low_complexity 1 31 0 204 40 0 0 chr9 110734147 110734172 -31537272 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 2392 65 83 3 chr9 110734172 110734523 -31536921 - L1PA8 LINE L1 -24 6148 5770 1039 181 0 0 chr9 110734652 110734856 -31536588 - L1PB4 LINE L1 -3329 2874 2671 * 4522 185 87 17 chr9 110734854 110736425 -31535019 - L1PB4 LINE L1 -3828 2375 638 264 77 0 0 chr9 110736425 110736464 -31534980 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4522 185 87 17 chr9 110736464 110736805 -31534639 - L1PB4 LINE L1 -5565 638 322 665 167 62 6 chr9 110736806 110736968 -31534476 - L1PB4 LINE L1 -5939 265 95 781 214 30 6 chr9 110737075 110737243 -31534201 + MIR SINE MIR 29 200 -62 22 80 0 0 chr9 110737298 110737348 -31534096 + AT_rich Low_complexity Low_complexity 1 50 0 1289 122 0 5 chr9 110737349 110737546 -31533898 - MER2 DNA MER2_type -149 196 1 207 100 0 0 chr9 110738218 110738248 -31533196 + (A)n Simple_repeat Simple_repeat 1 30 0 632 128 20 142 chr9 110738522 110738646 -31532798 + MER96B DNA MER1_type? 1 92 -325 2330 100 3 0 chr9 110738646 110738946 -31532498 + AluSc SINE Alu 2 302 -7 632 128 20 142 chr9 110738946 110739025 -31532419 + MER96B DNA MER1_type? 92 179 -238 192 266 105 57 chr9 110739211 110739335 -31532109 + MIR SINE MIR 123 252 -10 246 286 13 0 chr9 110739375 110739452 -31531992 - MIR SINE MIR 0 262 185 2756 81 8 0 chr9 110739522 110739881 -31531563 + THE1B LTR MaLR 1 362 -2 207 289 48 0 chr9 110740163 110740246 -31531198 - MIR3 SINE MIR -32 176 90 259 341 32 32 chr9 110740442 110740565 -31530879 + MIR3 SINE MIR 1 123 -85 1763 160 11 14 chr9 110740693 110740974 -31530470 - AluJo SINE Alu -32 280 1 281 308 126 72 chr9 110741204 110741522 -31529922 - L2 LINE L2 -13 3259 2925 684 217 140 47 chr9 110741618 110741634 -31529810 + MIR SINE MIR 6 19 -243 1294 255 15 6 chr9 110741634 110741971 -31529473 + MER58B DNA MER1_type 1 340 -1 684 217 140 47 chr9 110741971 110742189 -31529255 + MIR SINE MIR 19 262 0 186 311 33 22 chr9 110742175 110742265 -31529179 + L2 LINE L2 3223 3313 0 * 571 325 60 57 chr9 110743831 110744163 -31527281 - L2 LINE L2 0 3272 2940 344 296 93 6 chr9 110744930 110745092 -31526352 - MIR SINE MIR -44 218 43 28 48 0 0 chr9 110745145 110745187 -31526257 + AT_rich Low_complexity Low_complexity 1 42 0 425 301 21 15 chr9 110746221 110746383 -31525061 + MIR3 SINE MIR 17 183 -49 257 347 0 0 chr9 110746391 110746463 -31524981 - L2 LINE L2 -8 3264 3193 204 211 39 0 chr9 110747344 110747396 -31524048 + MIR SINE MIR 43 96 -112 216 263 25 38 chr9 110747857 110747937 -31523507 + L2 LINE L2 3216 3294 -19 1437 297 111 59 chr9 110748878 110750241 -31521203 + L2 LINE L2 1875 3313 0 336 261 141 0 chr9 110750458 110750550 -31520894 - L2 LINE L2 0 3313 3209 539 280 119 13 chr9 110750613 110750849 -31520595 - MIR SINE MIR 0 262 2 330 340 92 35 chr9 110751028 110751375 -31520069 - L2 LINE L2 -362 2952 2586 482 266 87 39 chr9 110753484 110753700 -31517744 - MIR SINE MIR -27 235 16 649 346 134 18 chr9 110754018 110754777 -31516667 - L2 LINE L2 -33 3280 2431 184 351 0 0 chr9 110754788 110754845 -31516599 - MIR SINE MIR -159 103 47 584 308 11 16 chr9 110755459 110755641 -31515803 - MER5A DNA MER1_type -8 181 1 229 195 0 0 chr9 110755919 110755960 -31515484 + (TG)n Simple_repeat Simple_repeat 1 41 0 1393 83 83 5 chr9 110756304 110756535 -31514909 - AluSg/x SINE Alu 0 351 106 247 157 36 108 chr9 110758196 110758279 -31513165 + MIR SINE MIR 186 262 0 405 123 57 16 chr9 110758868 110758990 -31512454 + (TA)n Simple_repeat Simple_repeat 2 128 0 180 0 0 0 chr9 110759115 110759135 -31512309 + (TC)n Simple_repeat Simple_repeat 1 20 0 207 291 112 107 chr9 110759151 110759347 -31512097 + L2 LINE L2 3075 3271 -1 2305 64 40 3 chr9 110760063 110760360 -31511084 - AluY SINE Alu -3 308 1 255 263 114 44 chr9 110760427 110760541 -31510903 - MIR SINE MIR -18 244 123 1997 181 47 7 chr9 110760704 110761147 -31510297 + L1MC3 LINE L1 7325 7785 0 278 278 65 59 chr9 110761233 110761402 -31510042 - L2 LINE L2 -942 2372 2203 193 356 87 17 chr9 110762579 110762694 -31508750 + MIR SINE MIR 44 166 -96 290 319 85 0 chr9 110762694 110762788 -31508656 - L2 LINE L2 -8 3264 3163 374 311 47 47 chr9 110763020 110763213 -31508231 + MIR SINE MIR 20 212 -50 190 303 15 15 chr9 110764501 110764567 -31506877 + L2 LINE L2 3196 3261 -11 386 354 51 0 chr9 110765271 110765446 -31505998 + MIR SINE MIR 31 214 -48 671 251 53 10 chr9 110765459 110765666 -31505778 + MIR SINE MIR 45 260 -2 711 261 82 30 chr9 110767339 110767607 -31503837 - L1ME3 LINE L1 0 6162 5881 181 263 140 18 chr9 110768043 110768157 -31503287 + MIR3 SINE MIR 35 162 -46 1831 174 86 13 chr9 110768222 110768554 -31502890 + MLT2D LTR ERVL 1 308 -106 189 0 0 0 chr9 110768554 110768575 -31502869 + (TC)n Simple_repeat Simple_repeat 2 22 0 534 70 0 0 chr9 110768577 110768648 -31502796 + (CA)n Simple_repeat Simple_repeat 2 72 0 1831 174 86 13 chr9 110768648 110768698 -31502746 + MLT2D LTR ERVL 308 414 0 186 43 0 0 chr9 110769869 110769892 -31501552 + (TC)n Simple_repeat Simple_repeat 2 24 0 269 274 29 20 chr9 110770018 110770120 -31501324 + MIR SINE MIR 83 185 -77 21 57 0 0 chr9 110770666 110770701 -31500743 + AT_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr9 110770748 110770779 -31500665 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr9 110770886 110770921 -31500523 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr9 110771808 110771837 -31499607 + GC_rich Low_complexity Low_complexity 1 29 0 493 300 50 0 chr9 110772260 110772400 -31499044 + MIR SINE MIR 3 149 -113 1013 209 33 19 chr9 110772429 110772640 -31498804 - MER20 DNA MER1_type -4 215 2 305 295 32 0 chr9 110772703 110772798 -31498646 + MIR SINE MIR 47 144 -118 450 289 39 8 chr9 110773017 110773145 -31498299 - MIR SINE MIR -108 154 23 192 255 21 0 chr9 110774279 110774326 -31497118 + L2 LINE L2 3213 3260 -12 183 42 0 0 chr9 110774361 110774385 -31497059 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 986 218 183 16 chr9 110774388 110774645 -31496799 - AluSg SINE Alu 0 300 1 226 327 62 35 chr9 110774760 110774873 -31496571 + MIR SINE MIR 23 138 -124 292 240 67 0 chr9 110775169 110775244 -31496200 - L2 LINE L2 -840 2474 2395 1478 181 84 75 chr9 110775259 110775630 -31495814 - MLT1A2 LTR MaLR 0 374 1 378 279 91 18 chr9 110776701 110776866 -31494578 - MIR SINE MIR -6 256 80 278 333 94 28 chr9 110777628 110777808 -31493636 - MIR SINE MIR -70 192 1 222 339 65 32 chr9 110777885 110778009 -31493435 + L2 LINE L2 3133 3260 -12 1569 154 11 0 chr9 110778849 110779116 -31492328 + L1MA4 LINE L1 6020 6289 -11 964 226 35 0 chr9 110779424 110779623 -31491821 + MIR SINE MIR 6 211 -51 377 247 21 0 chr9 110779624 110779721 -31491723 + L1MD3 LINE L1 7730 7828 -167 850 271 78 57 chr9 110780741 110781253 -31490191 - L1ME4a LINE L1 -188 5933 5411 207 284 163 14 chr9 110781259 110781400 -31490044 - MIR SINE MIR -96 166 5 203 271 34 0 chr9 110782161 110782220 -31489224 - L2 LINE L2 -1 3312 3252 1109 297 36 18 chr9 110782260 110782647 -31488797 + LTR16A LTR ERVL 52 445 -5 291 309 68 29 chr9 110783235 110783441 -31488003 - MIR3 SINE MIR -50 212 2 845 314 44 3 chr9 110783637 110783952 -31487492 + L3 LINE CR1 620 947 -630 613 81 0 0 chr9 110783969 110784043 -31487401 - AluY SINE Alu -235 83 10 1584 93 5 5 chr9 110784043 110784258 -31487186 + AluSg/x SINE Alu 85 299 -10 329 311 21 11 chr9 110784559 110784713 -31486731 + MIR SINE MIR 72 226 -36 180 231 220 55 chr9 110784747 110784838 -31486606 - L3 LINE CR1 -1460 117 12 330 115 0 39 chr9 110785140 110785192 -31486252 + MIR3 SINE MIR 111 160 -48 23 0 0 0 chr9 110785875 110785898 -31485546 + AT_rich Low_complexity Low_complexity 1 23 0 1737 238 42 22 chr9 110786350 110786845 -31484599 - Charlie4a DNA MER1_type -3 505 1 200 284 34 34 chr9 110788223 110788311 -31483133 - L2 LINE L2 -11 3261 3174 268 258 0 65 chr9 110788535 110788628 -31482816 + MIR SINE MIR 86 172 -90 243 88 0 0 chr9 110788965 110788999 -31482445 + (TC)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr9 110789019 110789047 -31482397 + AT_rich Low_complexity Low_complexity 1 28 0 453 302 16 19 chr9 110789196 110789366 -31482078 + MIR3 SINE MIR 3 173 -64 1730 272 134 26 chr9 110789504 110789962 -31481482 + L2 LINE L2 2151 2558 -755 2432 92 3 0 chr9 110789962 110790266 -31481178 - AluSp SINE Alu -6 307 3 1730 272 134 26 chr9 110790266 110790844 -31480600 + L2 LINE L2 2558 3313 0 339 316 115 6 chr9 110790878 110791052 -31480392 - MIR SINE MIR -65 197 5 180 0 0 0 chr9 110791100 110791120 -31480324 + (TTG)n Simple_repeat Simple_repeat 2 21 0 385 313 48 18 chr9 110792084 110792250 -31479194 - MIR SINE MIR -70 192 22 284 269 166 52 chr9 110792652 110792845 -31478599 + L2 LINE L2 2844 3058 -255 1300 234 147 20 chr9 110792845 110793293 -31478151 + MLT1D LTR MaLR 1 505 0 1596 169 91 37 chr9 110793439 110793789 -31477655 - L1MC3 LINE L1 -267 7518 7150 360 304 67 7 chr9 110793858 110793993 -31477451 - MIR SINE MIR -112 150 8 230 83 28 0 chr9 110794180 110794216 -31477228 - L1MC3 LINE L1 -172 7613 7577 384 260 48 10 chr9 110794425 110794529 -31476915 - MIR3 SINE MIR -87 121 14 257 350 20 0 chr9 110795161 110795277 -31476167 - MIR SINE MIR -65 143 35 2374 172 52 2 chr9 110795400 110795806 -31475638 - MSTB LTR MaLR 0 426 1 263 271 85 31 chr9 110796175 110796304 -31475140 + L2 LINE L2 3137 3272 0 1996 209 58 31 chr9 110796672 110797156 -31474288 - L1MB5 LINE L1 -8 6166 5670 604 300 86 14 chr9 110797662 110797872 -31473572 - MIR SINE MIR -25 237 13 2244 88 0 3 chr9 110798019 110798303 -31473141 + AluY SINE Alu 1 283 -28 430 91 0 0 chr9 110798306 110798361 -31473083 + Alu SINE Alu 243 297 -14 214 308 94 17 chr9 110798964 110799081 -31472363 + MIR SINE MIR 59 184 -78 270 267 40 0 chr9 110799203 110799278 -31472166 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 2028 165 139 3 chr9 110800101 110800476 -31470968 + MSTB1 LTR MaLR 7 432 0 258 29 29 0 chr9 110800546 110800580 -31470864 + MADE1 DNA Mariner 46 80 0 627 308 21 47 chr9 110800760 110800994 -31470450 - MIR SINE MIR -19 243 16 393 306 46 17 chr9 110801032 110801205 -31470239 - MIR SINE MIR -13 249 72 207 0 0 0 chr9 110801217 110801240 -31470204 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 45263 38 2 0 chr9 110801242 110807378 -31464066 - L1PA4 LINE L1 -8 6147 1 183 186 93 0 chr9 110807384 110807427 -31464017 - MIR SINE MIR -200 62 16 469 128 77 0 chr9 110808077 110808155 -31463289 + MER3 DNA MER1_type 126 209 0 280 200 0 0 chr9 110808112 110808162 -31463282 - MER3 DNA MER1_type -119 90 41 * 275 305 12 0 chr9 110808320 110808402 -31463042 + MER96 DNA MER1_type? 8 90 -85 307 361 145 16 chr9 110808419 110808668 -31462776 + L2 LINE L2 2967 3247 -25 283 262 65 60 chr9 110809515 110809683 -31461761 - MIR3 SINE MIR -24 184 16 363 311 48 6 chr9 110809859 110810026 -31461418 + MIR SINE MIR 34 207 -55 258 286 38 76 chr9 110810937 110811042 -31460402 - L2 LINE L2 -31 3241 3141 413 249 0 88 chr9 110811099 110811280 -31460164 + MIR SINE MIR 96 260 -2 212 173 39 0 chr9 110811619 110811671 -31459773 + CT-rich Low_complexity Low_complexity 4 57 0 658 330 48 31 chr9 110811798 110812152 -31459292 - LTR16C LTR ERVL -11 480 121 189 0 0 0 chr9 110812799 110812820 -31458624 + (T)n Simple_repeat Simple_repeat 1 21 0 220 337 0 32 chr9 110813223 110813318 -31458126 - MIR SINE MIR -135 127 36 360 305 71 14 chr9 110813768 110813909 -31457535 + L2 LINE L2 3121 3269 -3 270 276 23 23 chr9 110814346 110814433 -31457011 + MIR SINE MIR 100 186 -76 267 336 8 42 chr9 110815855 110815974 -31455470 + L2 LINE L2 3139 3253 -19 295 254 174 14 chr9 110816246 110816384 -31455060 + MIR SINE MIR 97 256 -6 230 266 43 43 chr9 110817088 110817182 -31454262 - MIR SINE MIR -109 153 60 454 196 5 121 chr9 110817703 110817902 -31453542 - L1M4 LINE L1 -997 5149 4974 362 305 102 39 chr9 110818089 110818571 -31452873 - L1M4 LINE L1 -1938 4208 3685 187 333 24 36 chr9 110818917 110819001 -31452443 - MIR SINE MIR -1 261 179 219 348 43 0 chr9 110819715 110819807 -31451637 - MIR SINE MIR -77 185 90 206 322 76 1 chr9 110820016 110820163 -31451281 + MIR SINE MIR 16 198 -64 258 231 33 83 chr9 110820989 110821110 -31450334 + L2 LINE L2 3199 3313 0 512 289 104 24 chr9 110821490 110821701 -31449743 + MIR SINE MIR 19 246 -16 5191 49 0 30 chr9 110822240 110822874 -31448570 - L1PA7 LINE L1 0 6154 5540 406 326 82 11 chr9 110823379 110823563 -31447881 - MIR SINE MIR -46 216 20 324 269 177 21 chr9 110824553 110824739 -31446705 + MIR SINE MIR 37 251 -11 691 288 47 62 chr9 110825900 110826352 -31445092 + LTR16A1 LTR ERVL 13 457 0 180 111 0 0 chr9 110826386 110826413 -31445031 + (TG)n Simple_repeat Simple_repeat 1 27 0 261 287 60 72 chr9 110826952 110827119 -31444325 + L3 LINE CR1 1412 1576 -1 358 297 70 74 chr9 110829145 110829663 -31441781 - L2 LINE L2 -25 3288 2777 212 282 6 138 chr9 110829774 110829955 -31441489 - L2 LINE L2 -98 3174 3018 501 233 75 8 chr9 110830796 110830916 -31440528 - MIR SINE MIR -61 147 20 427 244 76 0 chr9 110831125 110831244 -31440200 - MIR SINE MIR -74 188 61 22 0 0 0 chr9 110831942 110831964 -31439480 + AT_rich Low_complexity Low_complexity 1 22 0 993 223 10 0 chr9 110832181 110832378 -31439066 - MER58A DNA MER1_type 0 224 26 26 74 0 0 chr9 110833504 110833558 -31437886 + AT_rich Low_complexity Low_complexity 1 54 0 2110 137 3 3 chr9 110833821 110834128 -31437316 + AluSx SINE Alu 1 307 -5 380 354 15 15 chr9 110834592 110834790 -31436654 - MIR SINE MIR -5 257 60 969 164 62 11 chr9 110834912 110835089 -31436355 + MER20 DNA MER1_type 34 219 0 277 320 141 0 chr9 110835388 110835544 -31435900 + L2 LINE L2 2596 2773 -541 288 337 51 28 chr9 110835714 110835892 -31435552 + L2 LINE L2 2918 3099 -173 206 206 31 31 chr9 110835949 110836046 -31435398 + (TTATA)n Simple_repeat Simple_repeat 3 99 0 * 238 111 37 62 chr9 110835997 110836078 -31435366 + (TTAAA)n Simple_repeat Simple_repeat 5 83 0 238 273 13 0 chr9 110836089 110836166 -31435278 + L1M4 LINE L1 4748 4825 -1321 23 0 0 0 chr9 110836261 110836284 -31435160 + AT_rich Low_complexity Low_complexity 1 23 0 336 274 68 52 chr9 110836466 110837101 -31434343 + L1M4 LINE L1 5198 5893 -228 2316 107 3 0 chr9 110837681 110837990 -31433454 + AluSx SINE Alu 1 310 -2 210 272 8 112 chr9 110838129 110838227 -31433217 + L3 LINE CR1 1264 1348 -229 1866 151 51 38 chr9 110838227 110838597 -31432847 - THE1C LTR MaLR 0 375 1 210 272 8 112 chr9 110838597 110838623 -31432821 + L3 LINE CR1 1348 1375 -202 237 290 0 14 chr9 110839180 110839249 -31432195 + LTR67 LTR ERVL 489 556 -1 188 258 106 0 chr9 110839286 110839352 -31432092 - L2 LINE L2 0 3272 3200 276 274 47 47 chr9 110840011 110840117 -31431327 + MIR SINE MIR 41 146 -62 2044 156 27 113 chr9 110840212 110840762 -31430682 + MLT1D LTR MaLR 1 503 -2 579 232 40 67 chr9 110840943 110841040 -31430404 - MIR SINE MIR -9 253 155 2310 116 3 0 chr9 110841040 110841351 -31430093 - AluSx SINE Alu 0 312 1 579 232 40 67 chr9 110841351 110841477 -31429967 - MIR SINE MIR -107 155 36 271 128 13 51 chr9 110841910 110841988 -31429456 + (TG)n Simple_repeat Simple_repeat 1 75 0 7679 29 0 0 chr9 110842178 110843662 -31427782 - L1PA4 LINE L1 -3 6152 4665 5777 27 6 0 chr9 110843662 110844334 -31427110 + L1PA4 LINE L1 3986 4661 -1485 300 27 0 0 chr9 110844365 110844402 -31427042 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 293 339 17 9 chr9 110844499 110844614 -31426830 + MER5B DNA MER1_type 18 133 -45 190 226 0 97 chr9 110844644 110844706 -31426738 - MER5B DNA MER1_type -121 57 2 292 307 100 7 chr9 110844805 110844955 -31426489 + MIR SINE MIR 91 254 -8 3559 131 9 15 chr9 110845245 110845773 -31425671 - MER1A DNA MER1_type 0 527 3 2576 62 0 0 chr9 110847021 110847325 -31424119 - AluY SINE Alu -7 304 1 279 0 0 0 chr9 110847770 110847801 -31423643 + (CA)n Simple_repeat Simple_repeat 2 32 0 1853 118 8 8 chr9 110847843 110848106 -31423338 - AluSx SINE Alu -49 263 1 664 200 0 43 chr9 110849126 110849266 -31422178 - MER63 DNA MER1_type -302 760 1 2134 135 0 3 chr9 110851065 110851368 -31420076 - AluSq SINE Alu -11 302 1 185 86 57 0 chr9 110852773 110852808 -31418636 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 397 243 52 17 chr9 110852820 110852993 -31418451 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 371 287 6 23 chr9 110852934 110853108 -31418336 + CT-rich Low_complexity Low_complexity 2 172 0 * 315 248 40 56 chr9 110854601 110854726 -31416718 - MIR3 SINE MIR -9 199 77 1040 236 21 0 chr9 110855737 110855978 -31415466 - MIR SINE MIR -9 253 8 245 193 18 0 chr9 110856274 110856331 -31415113 - MIR SINE MIR -105 157 100 891 213 126 90 chr9 110857051 110857408 -31414036 - MLT1C LTR MaLR 0 467 21 288 318 116 42 chr9 110858246 110858848 -31412596 - L2 LINE L2 -74 3198 2553 238 212 15 15 chr9 110859318 110859384 -31412060 + CT-rich Low_complexity Low_complexity 3 68 0 4426 95 24 8 chr9 110859736 110860360 -31411084 + MER41B LTR ERV1 1 634 -1 645 181 35 0 chr9 110861262 110861378 -31410066 + MER45A DNA AcHobo 58 177 -1 393 353 28 24 chr9 110861899 110862148 -31409296 + L3 LINE CR1 1320 1569 -8 225 0 0 0 chr9 110862202 110862227 -31409217 + (T)n Simple_repeat Simple_repeat 1 25 0 212 158 0 0 chr9 110862380 110862418 -31409026 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 601 330 27 0 chr9 110862771 110862995 -31408449 + MIR SINE MIR 20 249 -13 191 264 0 0 chr9 110863133 110863186 -31408258 + L3 LINE CR1 1525 1577 0 286 255 102 83 chr9 110864441 110864598 -31406846 - MLT1I LTR MaLR -2 407 248 504 247 71 86 chr9 110864681 110864936 -31406508 + MLT1F-int LTR MaLR 1107 1357 -14 1591 246 88 11 chr9 110864948 110865382 -31406062 + MLT1F LTR MaLR 1 467 -75 256 346 133 21 chr9 110865410 110865644 -31405800 + L2 LINE L2 2557 2816 -498 824 307 101 19 chr9 110866043 110866408 -31405036 + LTR16C LTR ERVL 85 479 -12 346 273 0 10 chr9 110866423 110866522 -31404922 - MIR SINE MIR -12 250 153 264 264 35 0 chr9 110866519 110866606 -31404838 + MIR SINE MIR 128 217 -45 * 195 271 100 14 chr9 110866673 110866743 -31404701 - MIR SINE MIR -159 103 28 196 338 39 0 chr9 110866776 110866853 -31404591 + L2 LINE L2 3178 3257 -56 353 287 93 13 chr9 110867083 110867233 -31404211 + MIR SINE MIR 2 163 -99 2068 201 98 40 chr9 110867234 110867732 -31403712 - MLT1F LTR MaLR -2 540 14 403 277 67 41 chr9 110868048 110868243 -31403201 - MIR SINE MIR -60 202 3 305 227 23 0 chr9 110869004 110869092 -31402352 - MIR SINE MIR -99 163 74 400 289 111 47 chr9 110869415 110869840 -31401604 + HAL1 LINE L1 1218 1669 -838 1858 159 10 0 chr9 110870431 110870727 -31400717 - AluSx SINE Alu 0 312 14 225 0 0 0 chr9 110871871 110871896 -31399548 + (T)n Simple_repeat Simple_repeat 1 25 0 321 339 0 15 chr9 110872593 110872723 -31398721 + MIR SINE MIR 81 208 -54 512 345 49 15 chr9 110872984 110873309 -31398135 - L1M4 LINE L1 -2034 4112 3777 240 107 25 0 chr9 110873717 110873765 -31397679 - L1M4c LINE L1 -3960 2580 2532 2258 99 10 0 chr9 110874324 110874617 -31396827 + AluY SINE Alu 1 296 -15 498 284 130 6 chr9 110875699 110875861 -31395583 + MIR SINE MIR 32 213 -49 387 304 38 116 chr9 110878488 110878912 -31392532 - L2 LINE L2 -11 3261 2871 472 280 11 28 chr9 110880311 110880493 -31390951 + MER20B DNA MER1_type 1 179 -604 268 258 23 8 chr9 110881111 110881239 -31390205 + (TA)n Simple_repeat Simple_repeat 1 130 0 36 62 0 0 chr9 110881338 110881402 -31390042 + AT_rich Low_complexity Low_complexity 1 64 0 205 405 45 0 chr9 110881412 110881501 -31389943 + L2 LINE L2 3137 3229 -43 2096 75 0 29 chr9 110881952 110882232 -31389212 + AluY SINE Alu 26 297 -14 634 87 10 29 chr9 110882337 110882440 -31389004 + L1PA10 LINE L1 6067 6167 -1 291 247 134 25 chr9 110883777 110883915 -31387529 - MIR SINE MIR -65 143 4 254 343 65 0 chr9 110885254 110885362 -31386082 + L2 LINE L2 2565 2679 -635 763 235 31 0 chr9 110885429 110885625 -31385819 + MER3 DNA MER1_type 2 203 -6 180 135 0 0 chr9 110885697 110885734 -31385710 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 267 374 136 0 chr9 110886147 110886294 -31385150 + L2 LINE L2 3103 3269 -3 399 323 81 12 chr9 110886805 110886966 -31384478 - MIR SINE MIR -59 203 32 372 278 67 46 chr9 110887073 110887214 -31384230 - MIR3 SINE MIR -10 198 50 1777 158 6 65 chr9 110887214 110887537 -31383907 - AluJo SINE Alu -5 307 4 372 278 67 46 chr9 110887537 110887589 -31383855 - MIR3 SINE MIR -158 50 1 359 293 84 24 chr9 110887692 110887859 -31383585 + L1ME LINE L1 5552 5728 -393 299 293 66 9 chr9 110887899 110888005 -31383439 + MIR SINE MIR 138 249 -13 195 300 200 8 chr9 110888559 110888679 -31382765 + MIR SINE MIR 100 242 -20 1951 149 147 18 chr9 110889114 110889496 -31381948 + Tigger2a DNA MER2_type 4 434 0 378 145 43 8 chr9 110890235 110890495 -31380949 + (TA)n Simple_repeat Simple_repeat 1 269 0 235 311 118 17 chr9 110890904 110891023 -31380421 + L2 LINE L2 3142 3272 0 2238 95 27 0 chr9 110891423 110891718 -31379726 + AluSp SINE Alu 1 303 -10 186 71 0 0 chr9 110892284 110892312 -31379132 + (T)n Simple_repeat Simple_repeat 1 28 0 196 323 62 0 chr9 110893398 110893463 -31377981 - L2 LINE L2 -18 3254 3186 240 325 42 17 chr9 110893841 110893961 -31377483 - L2 LINE L2 -162 3110 2988 480 279 70 0 chr9 110894672 110894830 -31376614 - MIR3 SINE MIR -31 177 9 1924 173 0 0 chr9 110895440 110895747 -31375697 + AluJo SINE Alu 1 307 -5 185 322 59 59 chr9 110895971 110896089 -31375355 - L2 LINE L2 -599 2715 2598 488 316 57 41 chr9 110896106 110896350 -31375094 + MIR SINE MIR 1 248 -14 1976 181 18 87 chr9 110896605 110896736 -31374708 - LTR32 LTR ERVL 0 471 333 3507 131 49 47 chr9 110896736 110897369 -31374075 + MER51A LTR ERV1 1 634 0 1976 181 18 87 chr9 110897369 110897734 -31373710 - LTR32 LTR ERVL -138 333 9 308 350 102 21 chr9 110898618 110898804 -31372640 + MIR SINE MIR 49 249 -13 226 200 22 0 chr9 110899808 110899853 -31371591 + (TAA)n Simple_repeat Simple_repeat 2 47 0 227 206 112 103 chr9 110900059 110900166 -31371278 - MIR SINE MIR -132 130 23 339 113 0 42 chr9 110900955 110901007 -31370437 - MADE1 DNA Mariner 0 80 30 2381 77 0 0 chr9 110901007 110901305 -31370139 + AluSx SINE Alu 1 298 -14 339 113 0 42 chr9 110901305 110901323 -31370121 - MADE1 DNA Mariner -50 30 13 301 77 0 39 chr9 110901480 110901532 -31369912 - MADE1 DNA Mariner -30 50 1 247 369 74 8 chr9 110901848 110901970 -31369474 - L2 LINE L2 -1 3271 3142 268 304 29 0 chr9 110902009 110902078 -31369366 + L2 LINE L2 2983 3053 -219 220 259 0 69 chr9 110902309 110902367 -31369077 + L2 LINE L2 3228 3281 -32 1907 173 6 13 chr9 110902423 110902735 -31368709 + AluSx SINE Alu 1 310 -2 2440 58 0 0 chr9 110902773 110903066 -31368378 + AluY SINE Alu 1 293 -18 2166 266 120 57 chr9 110903125 110905359 -31366085 + HAL1 LINE L1 1 2391 -116 22 35 0 0 chr9 110905403 110905432 -31366012 + AT_rich Low_complexity Low_complexity 1 29 0 361 259 179 6 chr9 110906056 110906218 -31365226 - MIR SINE MIR -64 198 9 362 233 30 53 chr9 110906566 110906699 -31364745 - MER63A DNA MER1_type 0 210 81 294 304 130 0 chr9 110910444 110910559 -31360885 + MIR SINE MIR 127 256 -6 358 307 63 8 chr9 110910640 110910767 -31360677 + MIR3 SINE MIR 13 146 -62 940 261 83 31 chr9 110911330 110911679 -31359765 - MLT1J2 LTR MaLR -83 367 1 215 286 0 57 chr9 110911979 110912049 -31359395 - L2 LINE L2 -8 3264 3199 273 339 86 40 chr9 110912133 110912307 -31359137 - L2 LINE L2 -239 3033 2852 200 346 85 63 chr9 110913394 110913712 -31357732 - L2 LINE L2 -337 2977 2653 183 326 22 43 chr9 110913717 110913809 -31357635 - L2 LINE L2 -40 3232 3143 541 322 34 34 chr9 110914157 110914302 -31357142 + MIR SINE MIR 16 163 -99 1971 158 39 0 chr9 110914302 110914637 -31356807 - MER7A DNA MER2_type 0 346 1 541 322 34 34 chr9 110914637 110914730 -31356714 + MIR SINE MIR 162 254 -8 423 0 0 0 chr9 110914732 110914779 -31356665 + (CAT)n Simple_repeat Simple_repeat 2 48 0 332 241 44 28 chr9 110915458 110915672 -31355772 - MLT1J2 LTR MaLR -74 376 101 181 336 57 49 chr9 110916208 110916330 -31355114 + L2 LINE L2 3146 3268 -4 761 266 0 0 chr9 110916403 110916576 -31354868 + FAM SINE Alu 1 173 -2 499 341 120 42 chr9 110918501 110919446 -31351998 + L1ME4a LINE L1 4031 5048 -1098 317 105 18 18 chr9 110919487 110919544 -31351900 - L1PA16 LINE L1 -7 6159 6103 220 234 0 0 chr9 110919720 110919767 -31351677 + (TA)n Simple_repeat Simple_repeat 2 48 0 195 389 93 14 chr9 110919840 110920056 -31351388 - MIR SINE MIR -25 237 5 476 261 66 32 chr9 110920158 110920232 -31351212 + L1ME4a LINE L1 5436 5506 -615 2695 145 4 13 chr9 110920232 110920686 -31350758 + L1PA16 LINE L1 5717 6166 0 476 261 66 32 chr9 110920686 110920888 -31350556 + L1ME4a LINE L1 5506 5719 -402 1857 179 106 54 chr9 110920946 110921118 -31350326 + MLT1D LTR MaLR 1 163 -342 2308 116 0 0 chr9 110921118 110921421 -31350023 - AluSx SINE Alu -9 303 1 1857 179 106 54 chr9 110921421 110921728 -31349716 + MLT1D LTR MaLR 163 505 0 321 179 143 27 chr9 110923144 110923256 -31348188 + L1ME4a LINE L1 5962 6086 -35 219 170 0 0 chr9 110924673 110924720 -31346724 + (CA)n Simple_repeat Simple_repeat 2 48 0 335 314 39 13 chr9 110926198 110926354 -31345090 + L2 LINE L2 2231 2390 -924 231 132 0 206 chr9 110926372 110926440 -31345004 - Tigger5 DNA MER2_type -5 2318 2265 * 304 122 0 0 chr9 110926400 110926441 -31345003 + Tigger5 DNA MER2_type 2277 2317 -6 436 182 0 13 chr9 110926443 110926520 -31344924 - Tigger5 DNA MER2_type -2244 79 4 1034 236 0 5 chr9 110926537 110926740 -31344704 - MER58A DNA MER1_type -6 218 17 205 342 8 34 chr9 110926785 110926902 -31344542 + L2 LINE L2 2426 2539 -775 211 395 37 9 chr9 110927051 110927160 -31344284 - L2 LINE L2 -5 3267 3156 371 164 57 14 chr9 110927753 110927893 -31343551 + (TA)n Simple_repeat Simple_repeat 1 146 0 257 156 46 29 chr9 110927904 110928077 -31343367 + (TA)n Simple_repeat Simple_repeat 2 177 0 185 328 146 21 chr9 110928114 110928306 -31343138 + L3 LINE CR1 1332 1547 -30 191 347 56 0 chr9 110928607 110928679 -31342765 + MIR SINE MIR 29 104 -158 642 305 79 27 chr9 110928731 110929059 -31342385 + MLT1I LTR MaLR 63 407 -2 450 286 36 7 chr9 110929078 110929218 -31342226 + MIR SINE MIR 119 262 0 251 253 44 22 chr9 110929465 110929556 -31341888 + MIR3 SINE MIR 110 202 -6 447 291 58 71 chr9 110930140 110930504 -31340940 + L1ME4a LINE L1 5530 5888 -233 377 343 78 34 chr9 110931437 110931641 -31339803 + MIR SINE MIR 50 262 0 28 0 0 0 chr9 110932736 110932764 -31338680 + AT_rich Low_complexity Low_complexity 1 28 0 429 180 0 0 chr9 110932776 110932865 -31338579 + (TG)n Simple_repeat Simple_repeat 2 90 0 313 277 133 24 chr9 110936910 110937128 -31334316 - MIR SINE MIR -6 256 1 342 357 13 13 chr9 110938122 110938276 -31333168 - L2 LINE L2 -219 3053 2900 2052 78 0 0 chr9 110939117 110939373 -31332071 + AluY SINE Alu 1 256 -55 395 281 78 8 chr9 110940387 110940515 -31330929 - L2 LINE L2 -3 3310 3174 185 362 35 0 chr9 110942843 110942901 -31328543 - MIR SINE MIR -105 103 44 331 339 34 60 chr9 110943435 110943668 -31327776 - MIR SINE MIR -13 249 23 1046 185 113 7 chr9 110943850 110943904 -31327540 + MER5C DNA MER1_type 2 49 -275 2497 123 11 19 chr9 110943904 110944271 -31327173 + THE1B LTR MaLR 1 364 0 1046 185 113 7 chr9 110944271 110944508 -31326936 + MER5C DNA MER1_type 49 324 0 446 323 0 8 chr9 110944673 110944797 -31326647 + MIR SINE MIR 18 140 -122 1519 181 18 25 chr9 110944808 110945085 -31326359 + L1MB4 LINE L1 5409 5683 -497 532 176 0 0 chr9 110945090 110945175 -31326269 + MER47A DNA MER2_type 29 113 -253 1598 128 37 0 chr9 110945338 110945581 -31325863 + MER47A DNA MER2_type 115 366 0 2510 175 28 8 chr9 110945584 110946052 -31325392 + L1MB4 LINE L1 5685 6161 -19 207 0 0 0 chr9 110946073 110946096 -31325348 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 189 111 22 89 chr9 110946136 110946181 -31325263 + MIR SINE MIR 151 192 -70 24 0 0 0 chr9 110946229 110946253 -31325191 + AT_rich Low_complexity Low_complexity 1 24 0 6251 162 14 6 chr9 110946297 110948305 -31323139 - L1PB1 LINE L1 -1 6150 4123 184 337 36 0 chr9 110948505 110948588 -31322856 + MIR3 SINE MIR 118 203 -5 736 102 94 8 chr9 110949557 110949685 -31321759 - L1MB2 LINE L1 -8 6163 6025 234 324 42 0 chr9 110949686 110949757 -31321687 - MER2 DNA MER2_type -1 344 271 24 32 0 0 chr9 110949757 110949788 -31321656 + AT_rich Low_complexity Low_complexity 1 31 0 442 148 0 0 chr9 110949800 110949881 -31321563 - MER2 DNA MER2_type -138 207 127 2233 79 26 26 chr9 110949981 110950163 -31321281 - AluY SINE Alu -7 304 120 195 69 0 0 chr9 110950163 110950192 -31321252 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2233 79 26 26 chr9 110950192 110950313 -31321131 - AluY SINE Alu -190 121 1 2288 164 5 5 chr9 110950313 110950697 -31320747 - L1MB2 LINE L1 -339 5832 5449 203 246 18 18 chr9 110950745 110950802 -31320642 + L2 LINE L2 3215 3271 -1 258 344 11 11 chr9 110950828 110950921 -31320523 + MIR3 SINE MIR 87 179 -29 234 0 0 0 chr9 110951165 110951191 -31320253 + (T)n Simple_repeat Simple_repeat 1 26 0 34 24 0 0 chr9 110951238 110951279 -31320165 + AT_rich Low_complexity Low_complexity 1 41 0 1856 247 44 25 chr9 110951283 110951595 -31319849 - L1ME3 LINE L1 -43 6119 5790 2101 170 2 78 chr9 110951595 110951990 -31319454 - MLT1A1 LTR MaLR 0 365 1 1856 247 44 25 chr9 110951990 110952243 -31319201 - L1ME3 LINE L1 -372 5790 5543 271 264 0 0 chr9 110952261 110952348 -31319096 + (TA)n Simple_repeat Simple_repeat 2 88 0 243 260 177 70 chr9 110952388 110952715 -31318729 + L1ME4a LINE L1 5675 6036 -85 246 254 0 14 chr9 110952962 110953033 -31318411 + L1ME4a LINE L1 6052 6121 0 1357 193 54 37 chr9 110954476 110954772 -31316672 + MLT2B3 LTR ERVL 254 554 0 300 228 213 37 chr9 110955155 110955291 -31316153 - L2 LINE L2 -481 2833 2674 935 252 5 5 chr9 110955309 110955515 -31315929 + MER58A DNA MER1_type 19 224 0 237 331 148 33 chr9 110955590 110956016 -31315428 - L2 LINE L2 -752 2562 2088 24 0 0 0 chr9 110956358 110956382 -31315062 + AT_rich Low_complexity Low_complexity 1 24 0 199 131 10 71 chr9 110956515 110956614 -31314830 + (TA)n Simple_repeat Simple_repeat 1 93 0 206 343 56 9 chr9 110956649 110956757 -31314687 - MIR3 SINE MIR -81 127 15 1560 196 55 42 chr9 110957776 110958158 -31313286 - MLT1C LTR MaLR -5 462 76 4078 186 39 3 chr9 110958158 110958856 -31312588 - MER44D DNA MER2_type 0 605 11 247 307 27 0 chr9 110958882 110958957 -31312487 - MLT1C LTR MaLR -390 77 1 1919 207 41 62 chr9 110960041 110960374 -31311070 - MLT1D LTR MaLR 0 505 185 2241 102 10 19 chr9 110960374 110960688 -31310756 - AluSq SINE Alu -2 311 1 1919 207 41 62 chr9 110960688 110960870 -31310574 - MLT1D LTR MaLR -320 185 1 377 283 0 18 chr9 110961057 110961170 -31310274 + MIR SINE MIR 150 260 -2 294 273 196 14 chr9 110962298 110962441 -31309003 - MIR3 SINE MIR -37 171 3 276 124 10 175 chr9 110962480 110962577 -31308867 - MER53 DNA DNA 0 189 109 245 143 0 20 chr9 110962590 110962639 -31308805 + (TA)n Simple_repeat Simple_repeat 1 48 0 261 136 45 45 chr9 110962722 110962788 -31308656 + MER53 DNA DNA 81 146 -43 245 267 116 93 chr9 110963332 110963504 -31307940 + MIR SINE MIR 70 245 -17 354 256 9 166 chr9 110964307 110964473 -31306971 - MER5B DNA MER1_type 0 178 50 2198 106 10 0 chr9 110964473 110964766 -31306678 - AluSq SINE Alu -17 296 1 354 256 9 166 chr9 110964766 110964810 -31306634 - MER5B DNA MER1_type -128 50 1 1275 281 131 36 chr9 110964845 110965714 -31305730 - L2 LINE L2 -541 2773 1822 882 229 15 10 chr9 110965883 110966084 -31305360 + MIR SINE MIR 8 209 -53 2331 119 0 0 chr9 110966103 110966415 -31305029 + AluSx SINE Alu 1 312 0 240 328 108 32 chr9 110966423 110966609 -31304835 - MIR3 SINE MIR -6 202 3 243 0 0 0 chr9 110966718 110966745 -31304699 + (T)n Simple_repeat Simple_repeat 1 27 0 212 316 134 21 chr9 110967180 110967367 -31304077 + L2 LINE L2 2845 3052 -220 193 394 38 30 chr9 110967463 110967595 -31303849 + L2 LINE L2 3102 3234 -38 261 109 0 0 chr9 110968172 110968218 -31303226 + (CA)n Simple_repeat Simple_repeat 2 47 0 532 328 121 41 chr9 110968331 110968904 -31302540 + L2 LINE L2 2645 3311 -2 325 358 8 0 chr9 110969316 110969436 -31302008 + L2 LINE L2 2940 3060 -212 25 0 0 0 chr9 110969506 110969531 -31301913 + AT_rich Low_complexity Low_complexity 1 25 0 181 383 99 28 chr9 110969531 110969672 -31301772 + L2 LINE L2 3122 3272 0 856 275 67 4 chr9 110969827 110970067 -31301377 + MER46C DNA MER2_type 82 336 -2 1837 155 3 23 chr9 110970314 110970618 -31300826 - AluJb SINE Alu -14 298 1 246 242 182 0 chr9 110970691 110970757 -31300687 + MIR SINE MIR 73 150 -112 238 290 148 23 chr9 110970837 110971013 -31300431 - L2 LINE L2 -900 2414 2217 287 325 79 0 chr9 110971483 110971597 -31299847 - MIR3 SINE MIR -13 195 73 18150 146 28 8 chr9 110972239 110979680 -31291764 + L1MA1 LINE L1 14 7616 -105 2930 69 121 0 chr9 110980004 110980408 -31291036 - MLT2A2 LTR ERVL 0 453 1 1561 186 0 50 chr9 110980724 110981025 -31290419 + AluJo SINE Alu 1 286 -26 294 143 0 0 chr9 110981025 110981074 -31290370 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 2023 133 30 10 chr9 110982997 110983298 -31288146 - AluSx SINE Alu -5 307 1 488 136 93 59 chr9 110983325 110983443 -31288001 + MIR SINE MIR 64 185 -77 200 97 32 0 chr9 110983443 110983474 -31287970 + (TG)n Simple_repeat Simple_repeat 2 33 0 338 349 50 10 chr9 110983622 110983820 -31287624 + MIR SINE MIR 21 226 -36 222 280 327 6 chr9 110983807 110983975 -31287469 + MIR SINE MIR 23 244 -18 * 316 299 12 72 chr9 110984793 110984960 -31286484 + L1ME LINE L1 5625 5781 -340 222 62 0 0 chr9 110984974 110985006 -31286438 + (A)n Simple_repeat Simple_repeat 1 32 0 2224 85 4 0 chr9 110985006 110985287 -31286157 - AluSp SINE Alu -31 282 1 189 0 0 0 chr9 110985500 110985521 -31285923 + (GTTTG)n Simple_repeat Simple_repeat 5 25 0 369 0 0 0 chr9 110985523 110985564 -31285880 + (TG)n Simple_repeat Simple_repeat 1 41 0 1091 151 9 76 chr9 110988356 110988581 -31282863 + AluJb SINE Alu 87 296 -16 207 0 0 0 chr9 110988616 110988639 -31282805 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 891 262 22 55 chr9 110988725 110988782 -31282662 - L1ME1 LINE L1 -5 6161 6104 2352 86 0 13 chr9 110988782 110989095 -31282349 + AluY SINE Alu 1 309 -2 891 262 22 55 chr9 110989095 110989400 -31282044 - L1ME1 LINE L1 -62 6104 5811 274 189 38 0 chr9 110989833 110989886 -31281558 - MIR SINE MIR -72 136 82 692 177 33 107 chr9 110990104 110990263 -31281181 + MER105 DNA DNA 1 141 -63 1942 138 24 0 chr9 110990263 110990560 -31280884 - AluJb SINE Alu -8 304 1 692 177 33 107 chr9 110990560 110990615 -31280829 + MER105 DNA DNA 141 199 -5 278 231 77 29 chr9 110990723 110990827 -31280617 + MIR SINE MIR 104 212 -50 640 292 22 45 chr9 110991186 110991364 -31280080 + MER91A DNA MER1_type 1 174 -22 816 164 0 0 chr9 110991491 110991607 -31279837 + FLAM_C SINE Alu 1 116 -27 183 42 0 0 chr9 110991607 110991631 -31279813 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 432 156 16 125 chr9 110991701 110991829 -31279615 - MER63 DNA MER1_type -85 751 12 403 307 34 50 chr9 110991907 110992086 -31279358 - MIR SINE MIR -81 181 6 195 250 36 71 chr9 110992682 110992738 -31278706 + MIR SINE MIR 23 76 -186 265 324 65 9 chr9 110992795 110992903 -31278541 - MIR SINE MIR -48 214 101 6077 91 16 18 chr9 110992903 110993953 -31277491 + L1PA13 LINE L1 5111 6157 -6 21 0 0 0 chr9 110993954 110993975 -31277469 + AT_rich Low_complexity Low_complexity 1 21 0 1657 206 86 44 chr9 110994008 110994551 -31276893 + MLT1F1 LTR MaLR 3 567 0 240 267 40 13 chr9 110994634 110994709 -31276735 + MIR SINE MIR 74 150 -112 334 337 62 22 chr9 110994923 110995101 -31276343 + MIR SINE MIR 78 262 0 1794 152 45 0 chr9 110995314 110995603 -31275841 - AluSx SINE Alu -10 302 1 248 360 0 0 chr9 110995852 110995927 -31275517 + L2 LINE L2 3225 3299 -14 290 296 12 0 chr9 110996763 110996844 -31274600 + MIR SINE MIR 53 134 -74 2132 172 44 10 chr9 110997069 110997482 -31273962 + MSTB1 LTR MaLR 5 431 -1 428 331 161 20 chr9 110997916 110998604 -31272840 + L2 LINE L2 2075 2859 -455 398 362 46 0 chr9 110998916 110999090 -31272354 + MIR SINE MIR 18 199 -63 345 323 0 0 chr9 110999079 110999172 -31272272 - L2 LINE L2 -290 3023 2931 * 345 24 0 0 chr9 111001225 111001267 -31270177 + (TG)n Simple_repeat Simple_repeat 2 43 0 514 278 11 5 chr9 111002885 111003076 -31268368 + L1PB1 LINE L1 6 197 -6666 * 13590 191 14 20 chr9 111003073 111005427 -31266017 + L1PB1 LINE L1 1392 3759 -3108 2365 93 0 13 chr9 111005427 111005739 -31265705 + AluSc SINE Alu 1 308 -1 13590 191 14 20 chr9 111005739 111006450 -31264994 + L1PB1 LINE L1 3759 4473 -2394 2248 98 3 0 chr9 111006450 111006745 -31264699 + AluY SINE Alu 1 296 -15 13590 191 14 20 chr9 111006745 111009134 -31262310 + L1PB1 LINE L1 4473 6867 0 27 29 0 0 chr9 111009134 111009168 -31262276 + AT_rich Low_complexity Low_complexity 1 34 0 221 283 0 17 chr9 111009735 111009795 -31261649 - MIR3 SINE MIR -11 197 139 4832 152 39 42 chr9 111009796 111011120 -31260324 + L1MA9 LINE L1 4992 6310 -2 855 275 103 64 chr9 111011286 111011850 -31259594 + MLT1L LTR MaLR 6 591 -24 182 413 43 0 chr9 111011938 111012030 -31259414 + L2 LINE L2 3163 3258 -14 2656 240 19 16 chr9 111012182 111012883 -31258561 + MER97b DNA MER1_type? 1 703 -350 23 0 0 0 chr9 111013328 111013351 -31258093 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr9 111013494 111013526 -31257918 + AT_rich Low_complexity Low_complexity 1 32 0 673 230 76 28 chr9 111013669 111013960 -31257484 + MER97c DNA MER1_type? 785 1089 -1 185 312 169 26 chr9 111015004 111015158 -31256286 - MIR SINE MIR -48 214 39 777 272 65 9 chr9 111015852 111016084 -31255360 - MLT1J1 LTR MaLR -166 280 36 23 0 0 0 chr9 111016450 111016473 -31254971 + AT_rich Low_complexity Low_complexity 1 23 0 238 192 13 39 chr9 111016533 111016611 -31254833 + CT-rich Low_complexity Low_complexity 3 78 0 304 265 175 16 chr9 111016887 111017076 -31254368 - L1ME LINE L1 -503 5618 5400 21 0 0 0 chr9 111017213 111017234 -31254210 + AT_rich Low_complexity Low_complexity 1 21 0 425 330 119 16 chr9 111017234 111017728 -31253716 - L1ME LINE L1 -1542 4604 4060 192 322 27 128 chr9 111018511 111018769 -31252675 + L2 LINE L2 3021 3252 -20 186 43 0 0 chr9 111018776 111018799 -31252645 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 345 305 179 5 chr9 111018859 111019082 -31252362 - MIR SINE MIR 0 262 1 252 261 43 35 chr9 111019904 111020019 -31251425 + MER117 DNA MER1_type 1 116 -81 24 67 0 0 chr9 111021678 111021723 -31249721 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr9 111022189 111022218 -31249226 + AT_rich Low_complexity Low_complexity 1 29 0 756 180 35 39 chr9 111022342 111022563 -31248881 - MLT1C LTR MaLR -141 249 39 358 365 19 28 chr9 111023415 111023626 -31247818 - L1ME LINE L1 -2310 3836 3628 3214 198 21 23 chr9 111023677 111024839 -31246605 - L1MC1 LINE L1 -669 5664 4503 3797 146 40 6 chr9 111024840 111025491 -31245953 + L1MC1 LINE L1 5643 6315 -18 1913 179 54 8 chr9 111025151 111025504 -31245940 + L1MC1 LINE L1 5965 6333 0 21 57 0 0 chr9 111025529 111025564 -31245880 + AT_rich Low_complexity Low_complexity 1 35 0 256 355 83 16 chr9 111026123 111026244 -31245200 - MIR3 SINE MIR -67 141 13 336 48 0 0 chr9 111027010 111027052 -31244392 + (TG)n Simple_repeat Simple_repeat 2 43 0 795 204 22 0 chr9 111027062 111027199 -31244245 - FRAM SINE Alu -36 140 1 287 298 99 0 chr9 111027300 111027431 -31244013 + MIR SINE MIR 106 249 -13 507 337 50 10 chr9 111028273 111028475 -31242969 - MIR SINE MIR -52 210 1 214 171 43 43 chr9 111028572 111028642 -31242802 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 32 0 0 0 chr9 111028834 111028866 -31242578 + AT_rich Low_complexity Low_complexity 1 32 0 243 156 0 0 chr9 111028887 111028932 -31242512 - LTR66 LTR ERVL -172 438 394 2105 138 0 0 chr9 111028967 111029263 -31242181 - AluSx SINE Alu -16 296 1 1278 142 9 28 chr9 111029293 111029511 -31241933 + AluSg/x SINE Alu 99 312 0 748 225 112 5 chr9 111029809 111029996 -31241448 + MER58 DNA MER1_type 1 207 -134 185 336 72 32 chr9 111030067 111030192 -31241252 + MIR3 SINE MIR 10 139 -69 421 178 66 79 chr9 111030472 111030624 -31240820 - MER69 DNA AcHobo -34 2492 2343 324 260 70 20 chr9 111030603 111030703 -31240741 - MER69A DNA AcHobo -72 105 1 * 1115 329 37 28 chr9 111031087 111031655 -31239789 + ERVL LTR ERVL 4476 5048 -716 299 249 82 56 chr9 111031716 111031932 -31239512 - L1MEd LINE L1 -4806 1323 1111 288 331 24 8 chr9 111031935 111032059 -31239385 - L1MEd LINE L1 -5538 581 456 280 286 41 10 chr9 111032605 111032703 -31238741 + MIR SINE MIR 97 197 -65 399 277 68 137 chr9 111033293 111033585 -31237859 + L2 LINE L2 2997 3268 -4 194 271 14 29 chr9 111033841 111033911 -31237533 - MIR3 SINE MIR -2 206 138 339 125 0 0 chr9 111034017 111034073 -31237371 + Alu SINE Alu 242 297 -5 317 368 9 0 chr9 111034074 111034188 -31237256 + L2 LINE L2 3197 3311 -2 291 114 0 0 chr9 111034191 111034235 -31237209 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 183 100 0 0 chr9 111034235 111034265 -31237179 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 378 282 15 38 chr9 111034612 111034743 -31236701 - L2 LINE L2 -3 3269 3142 451 298 17 45 chr9 111035225 111035403 -31236041 + MIR3 SINE MIR 30 202 -6 265 214 11 11 chr9 111035729 111035818 -31235626 + (TG)n Simple_repeat Simple_repeat 2 90 0 195 323 46 0 chr9 111036252 111036317 -31235127 + MIR SINE MIR 86 153 -55 2164 125 0 0 chr9 111037532 111037828 -31233616 + AluSx SINE Alu 1 296 -16 286 239 171 40 chr9 111038082 111038258 -31233186 + L2 LINE L2 2776 2974 -340 1982 79 26 0 chr9 111039750 111040015 -31231429 + THE1A-int LTR MaLR 1309 1580 0 2457 106 29 9 chr9 111040015 111040363 -31231081 + THE1A LTR MaLR 1 355 0 289 326 11 0 chr9 111040879 111040968 -31230476 + (TG)n Simple_repeat Simple_repeat 2 91 0 398 218 161 46 chr9 111041290 111041464 -31229980 + L2 LINE L2 3120 3313 0 502 246 30 20 chr9 111041657 111041797 -31229647 - MER5B DNA MER1_type -34 155 2 290 343 48 70 chr9 111041837 111042108 -31229336 - L2 LINE L2 -93 3179 2915 971 157 15 66 chr9 111042372 111042569 -31228875 + MER5A DNA MER1_type 2 188 -1 318 198 0 141 chr9 111044155 111044276 -31227168 - MIR3 SINE MIR -102 106 3 264 320 159 55 chr9 111045525 111045890 -31225554 - L3 LINE CR1 -156 1421 1019 540 231 79 44 chr9 111045930 111046133 -31225311 - MER63A DNA MER1_type 0 210 1 180 0 0 0 chr9 111046434 111046454 -31224990 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 186 320 40 40 chr9 111046607 111046732 -31224712 + MIR3 SINE MIR 45 169 -39 709 232 72 5 chr9 111047467 111047661 -31223783 + L2 LINE L2 3107 3313 0 3366 191 29 23 chr9 111047664 111048312 -31223132 - MER82 DNA MER2_type 0 653 2 374 263 74 34 chr9 111048360 111048535 -31222909 + MIR SINE MIR 70 251 -11 357 300 100 28 chr9 111048949 111049129 -31222315 - MIR3 SINE MIR -15 193 1 318 50 0 0 chr9 111049992 111050032 -31221412 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 201 108 0 0 chr9 111051417 111051454 -31219990 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 390 304 52 31 chr9 111051757 111051951 -31219493 - MIR SINE MIR -48 214 17 227 312 80 14 chr9 111052031 111052169 -31219275 + L2 LINE L2 2171 2317 -997 1325 270 89 50 chr9 111052171 111053122 -31218322 - L2 LINE L2 0 3313 2343 303 49 0 0 chr9 111053171 111053212 -31218232 + (CA)n Simple_repeat Simple_repeat 1 41 0 184 410 10 45 chr9 111053638 111053838 -31217606 - L2 LINE L2 -463 2851 2659 761 294 18 10 chr9 111053955 111054201 -31217243 - MIR SINE MIR -13 249 3 281 350 32 16 chr9 111054584 111054707 -31216737 - L2 LINE L2 0 3272 3148 271 239 110 37 chr9 111054803 111054912 -31216532 + MIR SINE MIR 37 153 -55 21 0 0 0 chr9 111055497 111055518 -31215926 + AT_rich Low_complexity Low_complexity 1 21 0 397 284 20 25 chr9 111055600 111055766 -31215678 - MIR SINE MIR -6 256 94 604 260 6 47 chr9 111055997 111056166 -31215278 + LTR33 LTR ERVL 67 228 -293 445 331 17 12 chr9 111056244 111056416 -31215028 + LTR33 LTR ERVL 349 521 0 240 377 58 7 chr9 111057627 111057781 -31213663 + MIR SINE MIR 70 231 -31 485 358 44 58 chr9 111058177 111058366 -31213078 - L2 LINE L2 0 3272 3082 988 211 6 6 chr9 111058366 111058541 -31212903 + MER96 DNA MER1_type 1 175 0 485 358 44 58 chr9 111058541 111058801 -31212643 - L2 LINE L2 -190 3082 2829 4005 162 88 12 chr9 111059371 111059849 -31211595 - MER72 LTR ERV1 0 722 177 1808 104 54 0 chr9 111059849 111060108 -31211336 + AluSg SINE Alu 29 301 -9 4005 162 88 12 chr9 111060108 111060300 -31211144 - MER72 LTR ERV1 -545 177 1 312 293 78 70 chr9 111060553 111061177 -31210267 - L1MC5 LINE L1 -57 7904 7276 244 276 46 11 chr9 111061253 111061340 -31210104 - MIR SINE MIR -119 143 54 241 217 0 0 chr9 111061668 111061714 -31209730 + L2 LINE L2 3267 3312 -1 676 333 48 71 chr9 111061738 111062270 -31209174 + L2 LINE L2 2483 2993 -279 2045 96 0 4 chr9 111062270 111062560 -31208884 - AluSg SINE Alu 0 311 23 676 333 48 71 chr9 111062560 111062834 -31208610 + L2 LINE L2 2993 3272 0 373 317 54 32 chr9 111063125 111063460 -31207984 - L2 LINE L2 -214 3058 2712 22 0 0 0 chr9 111064367 111064389 -31207055 + AT_rich Low_complexity Low_complexity 1 22 0 2027 145 39 15 chr9 111064421 111064752 -31206692 + MER44D DNA MER2_type 1 609 0 1068 243 124 119 chr9 111066072 111066701 -31204743 + MER45C DNA AcHobo 2 633 -320 238 204 19 19 chr9 111066696 111066750 -31204694 + MER45C DNA AcHobo 899 952 -1 * 542 233 9 35 chr9 111067200 111067316 -31204128 + MER81 DNA DNA 2 114 0 307 353 6 35 chr9 111067374 111067544 -31203900 - MIR SINE MIR -50 212 48 1720 146 8 0 chr9 111068083 111068343 -31203101 - AluJb SINE Alu -16 296 35 229 267 0 0 chr9 111068591 111068651 -31202793 - L2 LINE L2 -1 3312 3253 278 242 58 47 chr9 111068942 111069061 -31202383 - MIR SINE MIR -74 134 24 1174 194 184 50 chr9 111070054 111070430 -31201014 - MSTC LTR MaLR 0 428 3 217 347 42 11 chr9 111070587 111070682 -31200762 + MIR SINE MIR 13 110 -152 209 276 105 0 chr9 111071020 111071096 -31200348 - MIR3 SINE MIR -122 86 3 2375 196 65 6 chr9 111071197 111071672 -31199772 + MLT1D LTR MaLR 3 505 0 271 198 112 17 chr9 111071741 111071857 -31199587 + L1ME4a LINE L1 5790 5916 -205 231 190 63 51 chr9 111071932 111072011 -31199433 + L1ME4a LINE L1 6041 6120 -1 370 272 48 0 chr9 111072619 111072722 -31198722 - L2 LINE L2 -18 3295 3188 786 259 58 91 chr9 111072875 111073405 -31198039 + LTR33A LTR ERVL 1 513 -10 24 85 0 0 chr9 111074087 111074146 -31197298 + AT_rich Low_complexity Low_complexity 1 59 0 344 278 78 9 chr9 111074779 111074894 -31196550 - MIR3 SINE MIR -21 187 65 1345 207 61 116 chr9 111075728 111076221 -31195223 + MLT1B LTR MaLR 1 466 -1 327 250 42 10 chr9 111077078 111077174 -31194270 - MIR3 SINE MIR -27 181 83 192 40 0 0 chr9 111077388 111077413 -31194031 + (A)n Simple_repeat Simple_repeat 1 25 0 1947 120 10 23 chr9 111077816 111078116 -31193328 + AluSq SINE Alu 1 296 -17 392 243 73 7 chr9 111078835 111078971 -31192473 + L1ME2 LINE L1 4341 4485 -1661 402 247 0 0 chr9 111078986 111079059 -31192385 - AluJ/FLAM SINE Alu -239 73 1 2831 236 55 34 chr9 111079153 111080791 -31190653 + L1ME2 LINE L1 4489 6332 -2 2215 127 0 0 chr9 111080816 111081124 -31190320 + AluY SINE Alu 1 308 -3 422 285 171 1 chr9 111081446 111081640 -31189804 - MIR SINE MIR -35 227 5 419 266 37 0 chr9 111082190 111082299 -31189145 + MIR SINE MIR 57 169 -93 703 299 43 95 chr9 111082775 111083349 -31188095 + L2 LINE L2 2702 3259 -13 403 296 133 34 chr9 111084232 111084465 -31186979 + MIR SINE MIR 7 262 0 235 246 82 64 chr9 111084618 111084728 -31186716 - L2 LINE L2 -5 3308 3197 790 192 44 100 chr9 111085130 111085359 -31186085 - MER20 DNA MER1_type -3 216 1 180 0 0 0 chr9 111085556 111085576 -31185868 + (TC)n Simple_repeat Simple_repeat 1 20 0 515 305 75 0 chr9 111085820 111086007 -31185437 - MIR SINE MIR -51 211 11 3844 156 24 10 chr9 111086523 111087247 -31184197 - L1MA7 LINE L1 0 6291 5558 534 284 42 16 chr9 111087656 111087846 -31183598 - MIR SINE MIR -6 256 62 463 275 39 39 chr9 111087851 111088033 -31183411 - L2 LINE L2 0 3313 3132 272 282 74 27 chr9 111088093 111088242 -31183202 + MLT1I LTR MaLR 101 256 -153 254 185 15 31 chr9 111088855 111088920 -31182524 + T-rich Low_complexity Low_complexity 2 65 0 310 322 40 58 chr9 111089455 111089629 -31181815 - L2 LINE L2 -38 3234 3064 3404 139 8 19 chr9 111089807 111090340 -31181104 + MER1A DNA MER1_type 1 527 0 207 346 7 81 chr9 111090437 111090573 -31180871 - MIR SINE MIR -35 227 102 2793 93 3 3 chr9 111091556 111091931 -31179513 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr9 111093733 111093762 -31177682 + AT_rich Low_complexity Low_complexity 1 29 0 351 303 91 0 chr9 111093900 111094032 -31177412 - MIR3 SINE MIR -64 144 1 326 376 17 8 chr9 111094247 111094364 -31177080 + MIR3 SINE MIR 10 127 -81 376 272 78 68 chr9 111096099 111096290 -31175154 - MIR SINE MIR -6 256 64 19220 170 29 10 chr9 111097049 111101088 -31170356 + L1MA1 LINE L1 19 4133 -3432 3929 166 4 0 chr9 111101091 111101825 -31169619 + L1MA1 LINE L1 5143 5879 -1686 * 5775 103 40 4 chr9 111101822 111102766 -31168678 + L1MA1 LINE L1 6736 7713 -8 24 32 0 0 chr9 111102766 111102797 -31168647 + AT_rich Low_complexity Low_complexity 1 31 0 273 259 9 27 chr9 111102968 111103080 -31168364 + HAL1 LINE L1 95 204 -2303 818 306 27 6 chr9 111103090 111103456 -31167988 + HAL1 LINE L1 1404 1777 -730 1496 153 11 11 chr9 111103466 111103659 -31167785 + L1MB1 LINE L1 5891 6086 -82 1710 125 119 32 chr9 111103659 111104004 -31167440 - THE1C LTR MaLR 0 375 1 1496 153 11 11 chr9 111104004 111104085 -31167359 + L1MB1 LINE L1 6085 6165 -3 965 279 88 14 chr9 111104177 111104596 -31166848 - LTR16A LTR ERVL 0 450 1 615 245 121 12 chr9 111104599 111104848 -31166596 + HAL1 LINE L1 1864 2139 -368 408 261 30 30 chr9 111104873 111105038 -31166406 + HAL1 LINE L1 2229 2393 -114 2301 69 21 0 chr9 111105341 111105631 -31165813 + AluY SINE Alu 1 296 -15 282 272 163 20 chr9 111106351 111106498 -31164946 + L2 LINE L2 3136 3303 -10 315 309 143 42 chr9 111106823 111107040 -31164404 - MIR SINE MIR -4 258 20 443 238 194 10 chr9 111110419 111110625 -31160819 + MLT1H LTR MaLR 1 244 -305 1546 211 87 51 chr9 111111495 111112196 -31159248 - Charlie7 DNA MER1_type -76 2536 1811 225 258 0 45 chr9 111112197 111112263 -31159181 - Charlie7 DNA MER1_type -2080 532 470 244 311 114 9 chr9 111112309 111112528 -31158916 - Charlie7 DNA MER1_type -2145 467 226 23 33 0 0 chr9 111112842 111112872 -31158572 + AT_rich Low_complexity Low_complexity 1 30 0 243 269 0 21 chr9 111113211 111113304 -31158140 + L1M4 LINE L1 2676 2766 -3380 234 242 74 0 chr9 111113544 111113639 -31157805 - L1ME4a LINE L1 -11 6110 6009 210 91 0 0 chr9 111113668 111113701 -31157743 + (CA)n Simple_repeat Simple_repeat 2 34 0 237 108 0 0 chr9 111114033 111114070 -31157374 + (TGG)n Simple_repeat Simple_repeat 1 37 0 677 184 0 0 chr9 111114179 111114288 -31157156 + FLAM_C SINE Alu 3 111 -32 228 191 0 0 chr9 111114324 111114366 -31157078 + Alu SINE Alu 70 111 -191 * 283 239 0 0 chr9 111114360 111114427 -31157017 + FLAM_A SINE Alu 66 132 -1 888 294 30 4 chr9 111114563 111114798 -31156646 + MIR SINE MIR 1 241 -21 323 293 27 41 chr9 111114994 111115141 -31156303 - L1M4 LINE L1 -1435 4711 4567 1332 244 14 3 chr9 111115237 111115589 -31155855 + L1PA16 LINE L1 3584 3939 -2207 5560 135 14 1 chr9 111115605 111116816 -31154628 + L1PA16 LINE L1 4929 6160 -6 328 338 35 41 chr9 111118106 111118251 -31153193 + MIR3 SINE MIR 40 183 -25 390 285 24 16 chr9 111119814 111119937 -31151507 + MIR SINE MIR 20 143 -119 239 335 82 71 chr9 111121418 111121508 -31149936 - L2 LINE L2 0 3272 3178 2299 68 7 46 chr9 111121508 111121815 -31149629 - AluY SINE Alu -16 295 1 239 335 82 71 chr9 111121815 111121894 -31149550 - L2 LINE L2 -94 3178 3101 333 228 33 11 chr9 111122100 111122192 -31149252 + LTR33 LTR ERVL 1 94 -427 274 330 71 0 chr9 111122802 111122914 -31148530 + L2 LINE L2 3133 3252 -20 230 318 0 0 chr9 111123271 111123334 -31148110 + GA-rich Low_complexity Low_complexity 2 64 0 432 270 27 0 chr9 111123366 111123477 -31147967 + L2 LINE L2 3197 3310 -3 422 275 40 13 chr9 111123685 111123834 -31147610 - MIR3 SINE MIR -19 189 37 252 341 138 21 chr9 111124798 111125088 -31146356 + L2 LINE L2 2594 2917 -397 1824 174 0 0 chr9 111125251 111125539 -31145905 + AluJb SINE Alu 6 293 -19 2564 30 7 3 chr9 111125629 111125932 -31145512 + AluY SINE Alu 1 304 -7 1247 133 207 113 chr9 111126733 111127124 -31144320 + MSTA LTR MaLR 1 428 0 1668 252 48 55 chr9 111127579 111128104 -31143340 + L1MEc LINE L1 597 1115 -5281 2057 115 7 11 chr9 111128104 111128391 -31143053 + AluSx SINE Alu 1 286 -26 1668 252 48 55 chr9 111128391 111128742 -31142702 + L1MEc LINE L1 1115 1467 -4929 1903 182 83 21 chr9 111128831 111129266 -31142178 - MLT1C LTR MaLR 0 467 6 233 276 14 8 chr9 111129271 111129440 -31142004 + L1 LINE L1 4936 5104 -1042 727 209 105 31 chr9 111129452 111129710 -31141734 + L1M4 LINE L1 3844 4120 -2026 200 284 92 9 chr9 111129737 111129846 -31141598 + L2 LINE L2 2208 2325 -989 23 0 0 0 chr9 111130206 111130229 -31141215 + AT_rich Low_complexity Low_complexity 1 23 0 2347 210 33 46 chr9 111130985 111131594 -31139850 + L1MC3 LINE L1 7109 7711 -74 546 79 26 0 chr9 111131594 111131670 -31139774 - MADE1 DNA Mariner 0 80 3 2347 210 33 46 chr9 111131670 111131694 -31139750 + L1MC3 LINE L1 7711 7734 -51 342 259 88 108 chr9 111132024 111132260 -31139184 - MIR SINE MIR 0 262 35 453 281 60 27 chr9 111133092 111133276 -31138168 - MIR3 SINE MIR 0 208 24 370 248 20 46 chr9 111133385 111133538 -31137906 + L1MC4 LINE L1 7473 7621 -421 1686 197 3 58 chr9 111133538 111133705 -31137739 + MLT1A1 LTR MaLR 1 176 -189 6086 87 25 9 chr9 111133705 111134578 -31136866 + L1PA13 LINE L1 5178 6068 -95 2597 118 0 0 chr9 111134578 111134942 -31136502 - THE1B LTR MaLR 0 364 1 6086 87 25 9 chr9 111134942 111135040 -31136404 + L1PA13 LINE L1 6068 6163 0 1686 197 3 58 chr9 111135040 111135253 -31136191 + MLT1A1 LTR MaLR 176 360 -5 622 237 114 15 chr9 111135317 111135636 -31135808 + L1MC4 LINE L1 7688 7995 0 223 296 102 0 chr9 111136763 111136851 -31134593 + L2 LINE L2 2900 2996 -276 317 226 10 88 chr9 111137073 111137175 -31134269 + MIR SINE MIR 28 121 -141 375 333 92 0 chr9 111137183 111137357 -31134087 - MIR SINE MIR -64 198 9 2056 124 35 51 chr9 111137666 111137740 -31133704 - THE1B LTR MaLR 0 364 290 2442 34 40 0 chr9 111137740 111138036 -31133408 + AluY SINE Alu 1 308 -3 2056 124 35 51 chr9 111138036 111138331 -31133113 - THE1B LTR MaLR -74 290 1 372 321 54 0 chr9 111138483 111138595 -31132849 + MIR SINE MIR 2 119 -143 2099 135 140 8 chr9 111139650 111140028 -31131416 + MSTA LTR MaLR 1 428 0 374 271 41 59 chr9 111140498 111140719 -31130725 - LTR40c LTR ERVL -91 374 158 1725 159 77 50 chr9 111140732 111141134 -31130310 - MSTB1 LTR MaLR 0 432 20 430 224 22 30 chr9 111141141 111141275 -31130169 - LTR40c LTR ERVL -332 133 1 203 175 0 0 chr9 111141443 111141483 -31129961 + T-rich Low_complexity Low_complexity 1 40 0 17451 157 24 9 chr9 111141483 111143210 -31128234 - L1PB1 LINE L1 0 6867 5168 273 57 0 0 chr9 111143210 111143245 -31128199 + (TTGTG)n Simple_repeat Simple_repeat 4 38 0 17451 157 24 9 chr9 111143245 111148278 -31123166 - L1PB1 LINE L1 -1699 5168 1 381 312 96 35 chr9 111148592 111148906 -31122538 - L1ME4a LINE L1 -199 5922 5590 422 211 0 22 chr9 111149400 111149490 -31121954 + MER21B LTR ERV1 1 88 -775 804 226 53 38 chr9 111149548 111149814 -31121630 + MER21B LTR ERV1 98 367 -496 3192 130 8 30 chr9 111149832 111150457 -31120987 - MER4B LTR ERV1 0 779 1 566 303 27 31 chr9 111150457 111150718 -31120726 + MER21B LTR ERV1 442 701 -162 270 264 0 58 chr9 111150907 111150994 -31120450 - MER5A DNA MER1_type 0 189 108 * 357 223 346 0 chr9 111150987 111151117 -31120327 + MER5A DNA MER1_type 9 183 -6 1804 168 58 6 chr9 111151957 111152302 -31119142 + MLT1A1 LTR MaLR 1 363 -2 378 335 78 17 chr9 111152326 111152518 -31118926 + MIR SINE MIR 36 237 -25 205 333 0 0 chr9 111152495 111152573 -31118871 - MIR SINE MIR 0 262 185 * 217 306 81 0 chr9 111152564 111152626 -31118818 - L2 LINE L2 0 3313 3247 218 250 39 0 chr9 111152640 111152692 -31118752 - MIR SINE MIR 0 262 209 460 209 75 34 chr9 111152745 111152890 -31118554 - MIR SINE MIR -60 202 58 261 180 49 0 chr9 111152922 111152983 -31118461 + MER116 DNA Mariner 3 66 -14 219 69 0 0 chr9 111153065 111153094 -31118350 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 521 343 0 0 chr9 111153310 111153485 -31117959 - MIR SINE MIR -3 259 85 1236 176 47 19 chr9 111154934 111155190 -31116254 - MLT1F1 LTR MaLR 0 567 305 550 199 34 20 chr9 111155235 111155381 -31116063 - MLT1F1 LTR MaLR -394 148 1 317 290 129 0 chr9 111155465 111155589 -31115855 + MIR3 SINE MIR 7 146 -62 254 299 75 9 chr9 111157045 111157152 -31114292 + MER5B DNA MER1_type 1 114 -64 246 344 8 47 chr9 111158212 111158340 -31113104 + L2 LINE L2 3183 3305 -8 268 243 28 75 chr9 111158393 111158437 -31113007 + MLT1C LTR MaLR 366 411 -56 2634 45 0 0 chr9 111158437 111158745 -31112699 + AluY SINE Alu 1 308 -3 268 243 28 75 chr9 111158745 111158807 -31112637 + MLT1C LTR MaLR 411 467 0 182 114 0 29 chr9 111159163 111159198 -31112246 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 493 248 9 0 chr9 111160493 111160602 -31110842 + MER81 DNA DNA 1 110 -4 3182 237 56 30 chr9 111160677 111162711 -31108733 + L1ME1 LINE L1 4091 6166 0 663 191 9 0 chr9 111162901 111163011 -31108433 - FLAM_A SINE Alu -18 115 5 2465 82 0 3 chr9 111163050 111163353 -31108091 + AluSc SINE Alu 1 302 -7 359 293 54 0 chr9 111163370 111163517 -31107927 - L1ME4a LINE L1 -4 6117 5963 225 298 193 0 chr9 111163601 111163715 -31107729 + MIR SINE MIR 113 248 -14 325 288 76 5 chr9 111163814 111164012 -31107432 - L1ME4a LINE L1 -378 5743 5532 399 309 51 55 chr9 111164099 111164374 -31107070 + L1MEd LINE L1 13 286 -5833 387 234 9 45 chr9 111164593 111164704 -31106740 - MER81 DNA DNA -2 112 6 540 198 120 6 chr9 111164872 111165039 -31106405 - MER53 DNA DNA -3 186 1 305 245 41 10 chr9 111165247 111165345 -31106099 + L1MEd LINE L1 896 996 -5123 638 242 0 68 chr9 111165345 111165535 -31105909 + MIR SINE MIR 81 257 -5 426 216 24 16 chr9 111165656 111165781 -31105663 - MER103 DNA DNA -2 164 39 400 326 0 0 chr9 111165788 111165931 -31105513 - MIR SINE MIR -64 144 1 4027 134 16 126 chr9 111166064 111166341 -31105103 + pTR5 LTR ERV1 743 1049 -1557 189 0 0 0 chr9 111166341 111166362 -31105082 + (CAGC)n Simple_repeat Simple_repeat 1 21 0 4027 134 16 126 chr9 111166362 111167619 -31103825 + pTR5 LTR ERV1 1049 2606 0 195 311 97 29 chr9 111168506 111168609 -31102835 - L2 LINE L2 -1 3271 3162 340 108 0 31 chr9 111168860 111168925 -31102519 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 255 221 70 35 chr9 111169403 111169489 -31101955 + MLT1K LTR MaLR 500 588 0 21 0 0 0 chr9 111169864 111169885 -31101559 + AT_rich Low_complexity Low_complexity 1 21 0 259 326 0 11 chr9 111170189 111170284 -31101160 - MLT1K LTR MaLR -337 251 158 1141 122 6 6 chr9 111170285 111170465 -31100979 - MSTA LTR MaLR -4 424 245 234 256 198 23 chr9 111171064 111171150 -31100294 + MIR SINE MIR 41 141 -121 315 298 122 0 chr9 111171158 111171289 -31100155 - L2 LINE L2 -15 3298 3152 2212 230 56 21 chr9 111171439 111172096 -31099348 + L1MC4 LINE L1 7170 7849 -193 477 290 38 67 chr9 111172221 111172923 -31098521 + L1MC4 LINE L1 7261 7977 -65 1316 177 20 0 chr9 111173496 111173750 -31097694 - Tigger6 DNA MER2_type -1251 346 88 2285 98 0 3 chr9 111173984 111174279 -31097165 - AluSp SINE Alu -19 294 1 2210 124 3 0 chr9 111174575 111174882 -31096562 - AluSx SINE Alu -4 308 1 280 335 85 43 chr9 111175742 111175906 -31095538 + MIR SINE MIR 19 189 -73 184 273 100 36 chr9 111177917 111178027 -31093417 - L2 LINE L2 -2 3270 3154 2081 122 7 0 chr9 111178291 111178587 -31092857 + AluSx SINE Alu 1 298 -14 1469 173 58 4 chr9 111178688 111178966 -31092478 + MER49 LTR ERV1 2 294 -629 1820 188 11 14 chr9 111179001 111179357 -31092087 + MER4D LTR ERV1 549 903 0 624 238 54 6 chr9 111179783 111179951 -31091493 - LTR16A LTR ERVL -1 449 274 190 182 26 91 chr9 111180079 111180156 -31091288 - MIR SINE MIR -25 237 166 646 297 48 32 chr9 111180674 111180923 -31090521 - MIR SINE MIR 0 262 10 300 333 20 0 chr9 111181312 111181414 -31090030 + L1ME LINE L1 5534 5637 -484 247 150 67 0 chr9 111182124 111182184 -31089260 + (AAATG)n Simple_repeat Simple_repeat 5 68 0 1665 155 93 25 chr9 111182285 111182652 -31088792 + L1MA9 LINE L1 5891 6282 -30 332 281 104 63 chr9 111182920 111183362 -31088082 + HAL1b LINE L1 309 768 -580 302 226 21 43 chr9 111183551 111183644 -31087800 - MIR3 SINE MIR -29 179 89 1772 247 185 1 chr9 111185153 111185808 -31085636 - LTR50 LTR ERVL -2 793 19 842 288 8 47 chr9 111185905 111186162 -31085282 - MIR SINE MIR -1 261 15 834 290 36 4 chr9 111186220 111186468 -31084976 - MIR SINE MIR 0 262 7 290 274 12 24 chr9 111186982 111187066 -31084378 + L2 LINE L2 3231 3313 0 21 0 0 0 chr9 111187485 111187506 -31083938 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr9 111187845 111187878 -31083566 + AT_rich Low_complexity Low_complexity 1 33 0 291 262 66 60 chr9 111188100 111188283 -31083161 - L1ME4a LINE L1 -53 6068 5885 303 125 10 52 chr9 111190372 111190468 -31080976 + (TA)n Simple_repeat Simple_repeat 1 92 0 250 203 17 17 chr9 111190482 111190541 -31080903 + (CATA)n Simple_repeat Simple_repeat 3 61 0 3601 196 52 18 chr9 111190849 111191577 -31079867 + L1MCa LINE L1 29 781 -5645 6292 187 94 18 chr9 111191586 111191874 -31079570 + L1MCa LINE L1 906 1171 -5255 1718 176 6 38 chr9 111191874 111192192 -31079252 + AluJb SINE Alu 1 308 -4 6292 187 94 18 chr9 111192192 111192481 -31078963 + L1MCa LINE L1 1171 1436 -4990 1433 173 12 109 chr9 111192481 111192885 -31078559 + MLT1A1 LTR MaLR 1 365 0 6292 187 94 18 chr9 111192885 111193855 -31077589 + L1MCa LINE L1 1436 2632 -3794 746 200 0 0 chr9 111193855 111193985 -31077459 + FLAM_C SINE Alu 3 132 -1 6292 187 94 18 chr9 111193985 111194413 -31077031 + L1MCa LINE L1 2632 3026 -3400 762 195 0 0 chr9 111194447 111194570 -31076874 - AluSq/x SINE Alu -190 123 1 1367 203 7 34 chr9 111194604 111195022 -31076422 + L1MCa LINE L1 3070 3476 -2950 1796 100 0 0 chr9 111195043 111195273 -31076171 - AluSq SINE Alu -83 230 1 2493 139 28 17 chr9 111195274 111195443 -31076001 + L1MC1 LINE L1 5844 6010 -323 1791 128 68 19 chr9 111195443 111195764 -31075680 - MER44D DNA MER2_type 0 609 3 2493 139 28 17 chr9 111195764 111196062 -31075382 + L1MC1 LINE L1 6010 6316 -17 219 278 186 10 chr9 111196075 111196172 -31075272 + MIR SINE MIR 61 174 -88 338 60 84 0 chr9 111197372 111197455 -31073989 + GA-rich Low_complexity Low_complexity 1 90 0 187 405 26 0 chr9 111197685 111197801 -31073643 - L2 LINE L2 -470 2844 2726 2081 169 0 16 chr9 111197955 111198321 -31073123 - MER46B DNA MER2_type -1 235 1 964 166 69 14 chr9 111198561 111198778 -31072666 - L1MC2 LINE L1 0 6344 6116 3482 114 20 34 chr9 111198778 111199087 -31072357 + L1PA13 LINE L1 5004 5316 -852 747 151 7 7 chr9 111199087 111199226 -31072218 - L1PA14 LINE L1 0 6161 6023 3482 114 20 34 chr9 111199226 111199727 -31071717 + L1PA13 LINE L1 5316 5783 -385 257 121 227 15 chr9 111199727 111199793 -31071651 - MADE1 DNA Mariner 0 80 1 2572 101 13 3 chr9 111199793 111200171 -31071273 + L1PA13 LINE L1 5782 6163 0 4563 162 18 2 chr9 111200208 111201010 -31070434 - L1MC2 LINE L1 -212 6132 5319 1506 181 46 12 chr9 111201006 111201331 -31070113 - L1MD3 LINE L1 0 7995 7660 * 5217 225 50 65 chr9 111201367 111202694 -31068750 + L1M4 LINE L1 1 1346 -5298 1899 150 7 10 chr9 111202694 111202994 -31068450 + AluJb SINE Alu 1 299 -13 5217 225 50 65 chr9 111202994 111205551 -31065893 + L1M4 LINE L1 1346 3947 -2697 264 301 104 25 chr9 111205894 111206057 -31065387 + MIR SINE MIR 20 195 -67 22 0 0 0 chr9 111206941 111206963 -31064481 + AT_rich Low_complexity Low_complexity 1 22 0 833 241 24 19 chr9 111207298 111207505 -31063939 - MER63A DNA MER1_type 0 210 3 565 266 45 19 chr9 111208751 111208999 -31062445 + Charlie8 DNA MER1_type 1 274 -2143 387 301 45 8 chr9 111209563 111209696 -31061748 - MIR SINE MIR -123 139 2 230 288 122 16 chr9 111209770 111209911 -31061533 - MIR SINE MIR -62 146 14 785 232 24 102 chr9 111211360 111211551 -31059893 - MIR SINE MIR -35 227 58 1975 190 94 26 chr9 111211551 111212020 -31059424 + MLT1D LTR MaLR 3 503 -2 785 232 24 102 chr9 111212020 111212074 -31059370 - MIR SINE MIR -204 58 1 284 376 75 8 chr9 111214723 111214856 -31056588 + L2 LINE L2 3127 3268 -4 297 345 36 7 chr9 111215372 111215511 -31055933 + MIR SINE MIR 1 143 -119 509 339 41 72 chr9 111215516 111215905 -31055539 - L2 LINE L2 0 3272 2896 193 235 38 129 chr9 111215917 111216049 -31055395 + MIR SINE MIR 142 261 -1 378 370 30 0 chr9 111217033 111217168 -31054276 - MIR3 SINE MIR -19 189 51 21 36 0 0 chr9 111217803 111217831 -31053613 + AT_rich Low_complexity Low_complexity 1 28 0 3536 41 7 0 chr9 111219076 111219515 -31051929 - L1P LINE L1 -1519 4627 4186 * 3935 41 0 2 chr9 111219514 111220003 -31051441 + L1P LINE L1 4590 5077 -1069 626 168 112 19 chr9 111220001 111220162 -31051282 + L1MC2 LINE L1 6169 6344 0 * 531 206 0 0 chr9 111220402 111220494 -31050950 + Tigger4(Zombi) DNA MER2_type 1 92 -2639 22094 29 2 1 chr9 111220594 111224019 -31047425 + L1PA2 LINE L1 2723 6153 -2 196 179 18 54 chr9 111224042 111224098 -31047346 + MIR SINE MIR 178 231 -31 21 57 0 0 chr9 111224099 111224134 -31047310 + AT_rich Low_complexity Low_complexity 1 35 0 5364 197 21 8 chr9 111224782 111225969 -31045475 - L1MC1 LINE L1 -3 6330 5132 665 183 52 63 chr9 111225976 111226167 -31045277 - L1MC5 LINE L1 -66 7895 7707 22 35 0 0 chr9 111226199 111226228 -31045216 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr9 111226259 111226290 -31045154 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 111226304 111226327 -31045117 + AT_rich Low_complexity Low_complexity 1 23 0 478 296 108 51 chr9 111226478 111226895 -31044549 - L1MC1 LINE L1 -1322 4824 4383 591 85 47 28 chr9 111226958 111227244 -31044200 + (TA)n Simple_repeat Simple_repeat 1 291 0 1240 197 84 21 chr9 111227343 111227627 -31043817 - AluJo SINE Alu 0 302 1 947 122 13 11 chr9 111227807 111228915 -31042529 - HSATII Satellite Satellite 0 1110 1 986 118 10 16 chr9 111228945 111230256 -31041188 - HSATII Satellite Satellite -3 1303 1 199 132 29 44 chr9 111230289 111230357 -31041087 + (GAATG)n Satellite Satellite 2 68 0 * 914 122 19 8 chr9 111230354 111230739 -31040705 - HSATII Satellite Satellite -102 389 1 714 136 0 45 chr9 111230773 111230949 -31040495 - HSATII Satellite Satellite -2 168 1 193 383 56 9 chr9 111231256 111231363 -31040081 - MIR3 SINE MIR 0 208 97 692 251 47 37 chr9 111231508 111231723 -31039721 + MIR SINE MIR 46 262 0 1290 189 66 24 chr9 111232569 111232903 -31038541 - MER7A DNA MER2_type 0 346 1 203 327 106 11 chr9 111232968 111233115 -31038329 - MIR SINE MIR -81 181 17 411 265 48 1 chr9 111234356 111234558 -31036886 - L1ME4a LINE L1 -224 5897 5683 1127 184 47 4 chr9 111234563 111234818 -31036626 - L1MD3 LINE L1 -1 7994 7729 2041 153 0 16 chr9 111234852 111235217 -31036227 - MER47A DNA MER2_type -7 359 1 344 341 45 0 chr9 111235246 111235378 -31036066 - L1ME4a LINE L1 -469 5652 5515 228 170 0 0 chr9 111235824 111235871 -31035573 + MER112 DNA MER1_type 121 167 -93 1261 175 54 14 chr9 111235897 111236194 -31035250 + MER33 DNA MER1_type 2 310 -14 26 30 0 0 chr9 111237458 111237491 -31033953 + AT_rich Low_complexity Low_complexity 1 33 0 574 278 60 53 chr9 111239828 111240259 -31031185 + MER113 DNA MER1_type? 83 516 -5 214 208 21 0 chr9 111240265 111240313 -31031131 + L3 LINE CR1 1527 1575 -2 2148 137 20 0 chr9 111240743 111241049 -31030395 + AluSx SINE Alu 1 312 0 196 272 22 76 chr9 111241457 111241549 -31029895 - L2 LINE L2 0 3272 3186 2152 150 8 3 chr9 111242596 111242950 -31028494 - MLT1A1 LTR MaLR 0 365 10 861 279 60 99 chr9 111243183 111243293 -31028151 + L2 LINE L2 2376 2489 -824 1541 212 85 14 chr9 111243293 111243727 -31027717 - MLT1C LTR MaLR -2 465 1 861 279 60 99 chr9 111243727 111244598 -31026846 + L2 LINE L2 2489 3313 0 409 234 36 27 chr9 111245283 111245394 -31026050 - MER81 DNA DNA -2 112 1 597 256 37 12 chr9 111246561 111246725 -31024719 - MIR SINE MIR -44 218 51 224 140 60 0 chr9 111246807 111246857 -31024587 + (TA)n Simple_repeat Simple_repeat 2 54 0 2229 100 3 13 chr9 111246888 111247188 -31024256 - AluSp SINE Alu -16 297 1 16271 41 12 0 chr9 111247342 111250158 -31021286 - L1PA4 LINE L1 -30 6125 3275 * 40639 35 22 1 chr9 111250155 111256179 -31015265 - L1PA2 LINE L1 -4 6151 1 24164 66 1 4 chr9 111256178 111259489 -31011955 - L1PA4 LINE L1 -2842 3304 2 * 191 294 79 40 chr9 111259577 111259703 -31011741 + MIR3 SINE MIR 4 134 -74 183 213 75 50 chr9 111259643 111259723 -31011721 + L2 LINE L2 2611 2692 -622 * 457 233 60 47 chr9 111259778 111259928 -31011516 + MIR SINE MIR 110 261 -1 191 360 0 12 chr9 111260424 111260510 -31010934 - MIR SINE MIR -146 116 32 279 0 0 0 chr9 111260513 111260544 -31010900 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 325 136 24 chr9 111260854 111261186 -31010258 + L2 LINE L2 2362 2730 -584 486 267 43 18 chr9 111262468 111262686 -31008758 - L1MC4a LINE L1 -238 5883 5669 1176 270 113 38 chr9 111262916 111263519 -31007925 - L3 LINE CR1 -230 1347 700 758 237 22 58 chr9 111263689 111263913 -31007531 + L2 LINE L2 3098 3313 0 5210 79 6 0 chr9 111264144 111264865 -31006579 + L1PA8A LINE L1 5380 6104 -27 2229 100 3 13 chr9 111265018 111265318 -31006126 + AluSp SINE Alu 1 297 -16 224 140 60 0 chr9 111265349 111265399 -31006045 + (TA)n Simple_repeat Simple_repeat 1 53 0 597 256 37 12 chr9 111265481 111265645 -31005799 + MIR SINE MIR 51 218 -44 409 234 36 27 chr9 111266812 111266923 -31004521 + MER81 DNA DNA 1 112 -2 300 320 56 0 chr9 111267608 111267733 -31003711 - L2 LINE L2 0 3313 3182 2726 29 9 0 chr9 111267958 111268303 -31003141 - L1P LINE L1 -1612 4534 4187 7153 45 6 5 chr9 111268303 111269861 -31001583 + L1PA5 LINE L1 4590 6147 -7 2397 74 0 0 chr9 111271330 111271627 -30999817 + AluY SINE Alu 1 297 -14 503 69 14 0 chr9 111271627 111271699 -30999745 + (GA)n Simple_repeat Simple_repeat 1 73 0 442 247 62 10 chr9 111271700 111271797 -30999647 - L2 LINE L2 -18 3295 3194 251 325 94 26 chr9 111271805 111271922 -30999522 + MIR3 SINE MIR 81 205 -3 245 385 94 0 chr9 111272027 111272144 -30999300 - L2 LINE L2 -16 3256 3129 392 283 80 47 chr9 111272202 111272976 -30998468 - L1ME4a LINE L1 -53 6068 5255 760 158 0 43 chr9 111273044 111273183 -30998261 + FLAM_C SINE Alu 1 133 0 336 143 0 0 chr9 111273183 111273239 -30998205 + (GGA)n Simple_repeat Simple_repeat 2 57 0 3010 23 6 0 chr9 111273328 111273680 -30997764 + L1PA2 LINE L1 5800 6153 -2 192 179 18 54 chr9 111273703 111273759 -30997685 + MIR SINE MIR 178 231 -31 21 57 0 0 chr9 111273760 111273795 -30997649 + AT_rich Low_complexity Low_complexity 1 35 0 5058 197 21 8 chr9 111274443 111275630 -30995814 - L1MC1 LINE L1 -3 6330 5132 615 183 52 63 chr9 111275637 111275828 -30995616 - L1MC5 LINE L1 -66 7895 7707 22 35 0 0 chr9 111275860 111275889 -30995555 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr9 111275920 111275951 -30995493 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 111275965 111275988 -30995456 + AT_rich Low_complexity Low_complexity 1 23 0 329 290 67 35 chr9 111276139 111276394 -30995050 - L1MC1 LINE L1 -1322 4824 4562 623 77 25 48 chr9 111276713 111277001 -30994443 + (TA)n Simple_repeat Simple_repeat 1 281 0 1355 191 80 17 chr9 111277096 111277384 -30994060 - AluJo SINE Alu -6 306 1 437 275 29 31 chr9 111277848 111278011 -30993433 - MIR3 SINE MIR -17 191 33 226 271 139 49 chr9 111279425 111279547 -30991897 - MIR3 SINE MIR -52 156 24 1083 142 24 0 chr9 111280613 111280782 -30990662 - AluSg/x SINE Alu -18 294 122 12220 204 64 16 chr9 111280793 111284701 -30986743 + L1MA10 LINE L1 3083 7244 -509 897 110 0 0 chr9 111284701 111284837 -30986607 + (TA)n Simple_repeat Simple_repeat 1 136 0 12220 204 64 16 chr9 111284837 111285360 -30986084 + L1MA10 LINE L1 7244 7740 -13 417 236 38 0 chr9 111285907 111286013 -30985431 - MIR SINE MIR -86 176 67 387 333 57 25 chr9 111286884 111287043 -30984401 + MIR SINE MIR 49 212 -50 1799 146 0 11 chr9 111287682 111287993 -30983451 - AluSx SINE Alu 0 318 11 243 255 82 9 chr9 111288024 111288130 -30983314 - MIR SINE MIR -44 164 43 215 146 55 18 chr9 111288371 111288426 -30983018 + (GTTTG)n Simple_repeat Simple_repeat 2 58 0 25 31 0 0 chr9 111288789 111288821 -30982623 + AT_rich Low_complexity Low_complexity 1 32 0 436 313 42 42 chr9 111289158 111289375 -30982069 - MIR SINE MIR -17 245 29 199 279 126 18 chr9 111289747 111289858 -30981586 - MIR SINE MIR -29 233 111 * 319 276 31 71 chr9 111289836 111289963 -30981481 + MIR SINE MIR 16 137 -125 1322 242 89 16 chr9 111290132 111290557 -30980887 + MER66A LTR ERV1 97 478 0 231 300 135 18 chr9 111290925 111291095 -30980349 + L2 LINE L2 2867 3056 -216 331 305 53 11 chr9 111291925 111292020 -30979424 - L2 LINE L2 -10 3262 3164 708 283 78 37 chr9 111292023 111292267 -30979177 + MIR SINE MIR 6 259 -3 188 323 81 0 chr9 111292888 111292950 -30978494 - L2 LINE L2 -123 3149 3083 1541 210 3 16 chr9 111292977 111293286 -30978158 + AluJo SINE Alu 1 305 -7 702 200 32 26 chr9 111293524 111293679 -30977765 - MER45A DNA AcHobo -22 156 1 22 0 0 0 chr9 111293868 111293890 -30977554 + AT_rich Low_complexity Low_complexity 1 22 0 289 334 105 43 chr9 111294271 111294642 -30976802 + L3 LINE CR1 961 1354 -223 185 200 0 0 chr9 111295716 111295751 -30975693 - L2 LINE L2 -28 3244 3210 342 266 105 14 chr9 111296485 111296628 -30974816 - LTR67 LTR ERVL -4 553 398 23 33 0 0 chr9 111297996 111298026 -30973418 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr9 111298064 111298086 -30973358 + GC_rich Low_complexity Low_complexity 1 22 0 1129 16 0 0 chr9 111298426 111298548 -30972896 + L1PA2 LINE L1 6030 6151 -4 * 18127 38 5 0 chr9 111298545 111301409 -30970035 + L1PA4 LINE L1 3275 6152 -3 3266 34 3 0 chr9 111301417 111301802 -30969642 + L1PA4 LINE L1 5770 6155 0 213 65 0 0 chr9 111301827 111301858 -30969586 + (A)n Simple_repeat Simple_repeat 1 31 0 2378 187 36 95 chr9 111302134 111302721 -30968723 + MLT2B3 LTR ERVL 1 552 -2 295 328 58 35 chr9 111302834 111303005 -30968439 + L2 LINE L2 2613 2787 -527 251 277 84 34 chr9 111303032 111303151 -30968293 + L2 LINE L2 2914 3038 -234 1125 232 73 96 chr9 111303982 111304504 -30966940 - LTR33A LTR ERVL 0 523 14 1537 142 27 4 chr9 111304835 111305060 -30966384 - MER30 DNA MER1_type 0 230 1 842 114 27 34 chr9 111305171 111305320 -30966124 + FRAM SINE Alu 20 167 -9 531 289 117 5 chr9 111305476 111305673 -30965771 + MIR SINE MIR 32 250 -12 237 351 60 20 chr9 111305924 111306075 -30965369 - L2 LINE L2 0 3272 3116 258 236 11 34 chr9 111306387 111306476 -30964968 + GA-rich Low_complexity Low_complexity 4 90 0 222 369 100 8 chr9 111306485 111306615 -30964829 - L2 LINE L2 -182 3090 2949 274 339 11 75 chr9 111306708 111306894 -30964550 - L2 LINE L2 -468 2846 2673 589 278 92 34 chr9 111306965 111307013 -30964431 + LTR16A LTR ERVL 97 141 -309 1852 107 232 23 chr9 111307013 111307367 -30964077 - MSTA LTR MaLR 0 428 1 589 278 92 34 chr9 111307367 111307645 -30963799 + LTR16A LTR ERVL 141 442 -8 413 222 33 0 chr9 111308788 111308878 -30962566 - L1ME3A LINE L1 -230 5940 5848 207 0 0 0 chr9 111310758 111310781 -30960663 + (GA)n Simple_repeat Simple_repeat 2 24 0 392 333 6 6 chr9 111311305 111311467 -30959977 - MIR3 SINE MIR -15 193 32 188 246 49 0 chr9 111311935 111311996 -30959448 + MIR SINE MIR 108 171 -91 257 339 27 9 chr9 111312480 111312592 -30958852 + MIR SINE MIR 33 146 -62 288 0 0 0 chr9 111313257 111313289 -30958155 + (TG)n Simple_repeat Simple_repeat 2 33 0 2623 104 16 27 chr9 111313532 111313907 -30957537 - THE1C LTR MaLR 0 375 5 303 269 31 18 chr9 111314851 111314999 -30956445 + L1PA8A LINE L1 5659 5805 -326 242 271 54 54 chr9 111315066 111315232 -30956212 + L1ME4a LINE L1 5945 6110 -11 274 364 15 23 chr9 111316515 111316647 -30954797 - MIR SINE MIR -62 146 16 237 317 0 119 chr9 111317178 111317279 -30954165 + MIR SINE MIR 42 130 -78 198 0 0 0 chr9 111317994 111318016 -30953428 + (TAA)n Simple_repeat Simple_repeat 2 23 0 772 277 66 9 chr9 111318174 111318506 -30952938 + L2 LINE L2 775 1125 -2189 1968 138 28 0 chr9 111318861 111319143 -30952301 - AluSx SINE Alu -22 290 1 275 167 0 0 chr9 111319273 111319327 -30952117 - L1ME4a LINE L1 -4 6117 6064 373 251 120 77 chr9 111319375 111319674 -30951770 - L1ME3A LINE L1 -271 5850 5539 264 130 0 0 chr9 111319991 111320037 -30951407 + (CA)n Simple_repeat Simple_repeat 1 46 0 558 267 154 17 chr9 111320405 111320645 -30950799 + LTR37B LTR ERV1 196 468 0 411 143 66 22 chr9 111321304 111321395 -30950049 - LTR37A LTR ERV1 -23 403 309 4531 117 89 76 chr9 111321395 111322756 -30948688 + pTR5 LTR ERV1 66 2438 0 248 218 18 18 chr9 111322987 111323097 -30948347 + GA-rich Low_complexity Low_complexity 2 111 0 22 0 0 0 chr9 111323959 111323981 -30947463 + AT_rich Low_complexity Low_complexity 1 22 0 371 345 28 7 chr9 111324245 111324390 -30947054 - MIR SINE MIR -34 228 81 447 405 50 18 chr9 111325457 111325800 -30945644 - L2 LINE L2 -18 3254 2901 915 216 77 25 chr9 111326266 111326710 -30944734 - LTR33A LTR ERVL -23 500 2 208 329 14 14 chr9 111326844 111326917 -30944527 - L2 LINE L2 -607 2707 2635 1278 265 14 17 chr9 111327131 111327486 -30943958 + MLT1I LTR MaLR 55 408 -1 193 294 65 22 chr9 111327514 111327606 -30943838 + MIR SINE MIR 117 212 -50 255 61 0 0 chr9 111328225 111328258 -30943186 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 307 346 131 74 chr9 111328276 111328643 -30942801 - L2 LINE L2 -54 3218 2831 465 271 42 8 chr9 111328812 111328930 -30942514 + L2 LINE L2 3190 3311 -2 275 284 84 73 chr9 111328933 111329208 -30942236 - L2 LINE L2 -170 3102 2825 332 238 148 20 chr9 111329852 111329953 -30941491 + MIR SINE MIR 21 134 -74 1784 163 39 0 chr9 111329971 111330254 -30941190 + AluJo SINE Alu 1 294 -18 251 242 97 0 chr9 111330442 111330504 -30940940 - MIR SINE MIR -14 248 181 264 314 0 0 chr9 111330533 111330603 -30940841 - L2 LINE L2 -11 3261 3192 2315 132 5 65 chr9 111330644 111331031 -30940413 + THE1B LTR MaLR 1 364 0 241 229 0 49 chr9 111331065 111331126 -30940318 - L3 LINE CR1 -319 1258 1201 210 327 0 0 chr9 111331887 111331942 -30939502 + L2 LINE L2 3205 3259 -13 216 0 0 0 chr9 111331942 111331966 -30939478 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 701 212 104 26 chr9 111332105 111332298 -30939146 - MIR SINE MIR -3 259 52 359 77 0 46 chr9 111333201 111333266 -30938178 + (A)n Simple_repeat Simple_repeat 1 62 0 210 315 0 22 chr9 111335126 111335218 -30936226 + L2 LINE L2 2946 3035 -237 2481 64 13 0 chr9 111335547 111335845 -30935599 - AluSp SINE Alu -11 302 1 501 297 23 7 chr9 111335903 111336080 -30935364 - MIR SINE MIR -63 145 20 207 318 32 0 chr9 111336362 111336425 -30935019 - L2 LINE L2 -3 3269 3205 202 315 48 63 chr9 111336455 111336725 -30934719 + L2 LINE L2 2848 3113 -159 2144 128 0 0 chr9 111337157 111337454 -30933990 + AluSq SINE Alu 1 297 -16 604 323 48 8 chr9 111337674 111337925 -30933519 + MIR SINE MIR 2 262 0 440 288 29 100 chr9 111338874 111339225 -30932219 - MLT1I LTR MaLR -44 365 40 809 217 38 33 chr9 111339862 111340046 -30931398 - AluJb SINE Alu -5 307 123 193 276 13 66 chr9 111340566 111340642 -30930802 + MIR SINE MIR 113 184 -78 231 61 0 0 chr9 111341209 111341242 -30930202 + (CAAAAA)n Simple_repeat Simple_repeat 5 37 0 312 327 43 74 chr9 111341770 111341932 -30929512 - L2 LINE L2 0 3272 3116 267 229 29 29 chr9 111341950 111342020 -30929424 + MIR3 SINE MIR 3 72 -136 228 216 0 0 chr9 111342092 111342143 -30929301 + (CA)n Simple_repeat Simple_repeat 2 52 0 503 248 41 8 chr9 111342143 111342264 -30929180 + L2 LINE L2 3189 3313 0 236 309 0 91 chr9 111342261 111342371 -30929073 + MIR3 SINE MIR 76 175 -33 * 377 286 26 39 chr9 111343649 111343803 -30927641 - MIR SINE MIR -2 260 109 304 295 57 0 chr9 111343858 111343980 -30927464 + L2 LINE L2 3144 3272 0 396 315 34 20 chr9 111344006 111344155 -30927289 + MIR3 SINE MIR 31 181 -27 186 320 66 16 chr9 111344576 111344698 -30926746 - L2 LINE L2 -7 3306 3179 1475 201 28 88 chr9 111345423 111345527 -30925917 + MER58B DNA MER1_type 1 110 -2310 618 168 168 0 chr9 111345527 111345634 -30925810 - FLAM_A SINE Alu -8 125 1 1475 201 28 88 chr9 111345634 111345892 -30925552 + MER58B DNA MER1_type 110 341 0 192 273 18 0 chr9 111347882 111347937 -30923507 - MIR3 SINE MIR -4 204 149 909 228 5 15 chr9 111348058 111348260 -30923184 + MER106A DNA MER1_type 6 205 -31 242 279 0 0 chr9 111348268 111348336 -30923108 - MER117 DNA MER1_type -127 70 3 339 336 8 45 chr9 111348343 111348477 -30922967 - MIR SINE MIR -55 153 25 191 292 70 98 chr9 111349166 111349554 -30921890 + L2 LINE L2 2672 3054 -218 2108 145 135 11 chr9 111349774 111350153 -30921291 + MSTA LTR MaLR 1 426 -2 1641 252 30 5 chr9 111350403 111350832 -30920612 - MER113 DNA MER1_type? -60 461 22 353 368 0 12 chr9 111351782 111351948 -30919496 + L3 LINE CR1 909 1072 -505 2208 95 3 0 chr9 111352234 111352543 -30918901 - AluSx SINE Alu 0 310 1 303 270 270 31 chr9 111352645 111352971 -30918473 + L3 LINE CR1 1085 1488 -89 200 230 63 126 chr9 111353916 111354090 -30917354 - L2 LINE L2 -35 3237 3075 198 0 0 0 chr9 111354164 111354186 -30917258 + (A)n Simple_repeat Simple_repeat 1 22 0 2080 128 0 0 chr9 111354995 111355320 -30916124 + AluSx SINE Alu 1 325 0 233 327 45 19 chr9 111355322 111355478 -30915966 - HAL1 LINE L1 -129 2378 2219 913 157 30 54 chr9 111355510 111355676 -30915768 + AluJo SINE Alu 1 162 -150 1007 117 37 0 chr9 111355782 111355944 -30915500 + AluSp SINE Alu 125 292 -21 198 0 0 0 chr9 111356153 111356175 -30915269 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 237 274 32 0 chr9 111356353 111356415 -30915029 - L2 LINE L2 0 3313 3250 195 286 18 18 chr9 111356774 111356830 -30914614 - L2 LINE L2 -5 3267 3212 268 244 23 58 chr9 111357583 111357669 -30913775 + L2 LINE L2 3152 3234 -38 248 337 11 11 chr9 111357748 111357840 -30913604 + MER5B DNA MER1_type 10 101 -77 350 290 21 26 chr9 111358234 111358387 -30913057 + MIR SINE MIR 5 152 -60 2249 108 0 0 chr9 111358776 111359072 -30912372 - AluSg SINE Alu -10 300 5 227 227 0 0 chr9 111359388 111359432 -30912012 - LTR6A LTR ERV1 -394 170 127 333 346 84 28 chr9 111359476 111359655 -30911789 - MER5A DNA MER1_type 0 189 1 937 207 106 0 chr9 111360348 111360546 -30910898 + MER58A DNA MER1_type 1 219 -5 398 226 14 55 chr9 111360820 111360966 -30910478 - Charlie7 DNA MER1_type 0 2612 2473 265 305 23 81 chr9 111361097 111361271 -30910173 - L2 LINE L2 -189 3083 2920 461 319 40 28 chr9 111362466 111362585 -30908859 + L1MC/D LINE L1 3850 3966 -2180 1724 190 20 0 chr9 111362585 111362890 -30908554 + AluJb SINE Alu 2 312 0 461 319 40 28 chr9 111362890 111363165 -30908279 + L1MC/D LINE L1 3966 4249 -1897 1163 292 67 51 chr9 111363455 111363978 -30907466 + L1MC/D LINE L1 4297 4401 -1745 2206 110 0 13 chr9 111363978 111364278 -30907166 + AluSx SINE Alu 1 296 -16 1163 292 67 51 chr9 111364278 111365193 -30906251 + L1MC/D LINE L1 4401 5300 -846 612 248 153 0 chr9 111365696 111365853 -30905591 + MER5A DNA MER1_type 9 189 0 237 275 110 0 chr9 111365939 111366030 -30905414 - MIR SINE MIR -2 260 160 484 294 86 0 chr9 111366035 111366222 -30905222 - MER113 DNA MER1_type? -5 516 314 207 284 116 21 chr9 111366265 111366360 -30905084 - L3 LINE CR1 -178 1399 1296 405 258 114 37 chr9 111366867 111367193 -30904251 + L1ME4a LINE L1 5351 5698 -423 262 293 12 12 chr9 111367272 111367354 -30904090 + L1ME4a LINE L1 5739 5820 -301 310 273 76 71 chr9 111367488 111367726 -30903718 + L1MC4a LINE L1 5667 5905 -1903 51 75 0 0 chr9 111368119 111368226 -30903218 + AT_rich Low_complexity Low_complexity 1 107 0 320 226 164 41 chr9 111368269 111368415 -30903029 + L1ME4a LINE L1 5946 6109 -12 477 252 60 33 chr9 111369704 111369855 -30901589 - MER5B DNA MER1_type 0 178 24 327 324 45 22 chr9 111369958 111370137 -30901307 + L2 LINE L2 2659 2841 -473 2047 299 35 29 chr9 111370533 111371222 -30900222 - MER115 DNA AcHobo 0 693 1 348 335 39 87 chr9 111371243 111371497 -30899947 + L2 LINE L2 3027 3268 -4 315 334 50 31 chr9 111372587 111372766 -30898678 + MIR SINE MIR 30 209 -53 300 344 0 0 chr9 111373080 111373173 -30898271 - L2 LINE L2 -10 3262 3170 28 29 0 0 chr9 111373328 111373363 -30898081 + AT_rich Low_complexity Low_complexity 1 35 0 284 301 129 48 chr9 111373543 111373752 -30897692 - L2 LINE L2 -470 2844 2619 409 304 93 26 chr9 111374828 111375022 -30896422 - L3 LINE CR1 -74 1503 1297 2110 130 3 0 chr9 111375086 111375378 -30896066 + AluJb SINE Alu 1 293 -19 271 203 63 89 chr9 111375862 111375941 -30895503 - MIR SINE MIR -158 104 28 1341 167 89 14 chr9 111375953 111376260 -30895184 + MER33 DNA MER1_type 1 323 -1 527 324 91 39 chr9 111377953 111378416 -30893028 - MLT1K LTR MaLR -91 497 11 547 262 165 10 chr9 111378805 111379011 -30892433 - MIR SINE MIR -24 238 1 390 259 40 40 chr9 111379208 111379342 -30892102 + MIR SINE MIR 18 151 -106 1966 125 14 7 chr9 111379342 111379639 -30891805 + AluSq SINE Alu 1 299 -14 390 259 40 40 chr9 111379639 111379682 -30891762 + MIR SINE MIR 150 192 -65 387 0 0 0 chr9 111379703 111379746 -30891698 + (TAGTG)n Simple_repeat Simple_repeat 2 44 0 388 205 13 0 chr9 111380921 111380999 -30890445 - MER116 DNA Mariner -1 79 1 865 309 124 19 chr9 111381128 111381507 -30889937 + L2 LINE L2 2895 3313 0 225 246 439 0 chr9 111382981 111383095 -30888349 + MER5A DNA MER1_type 26 189 0 355 296 40 46 chr9 111383380 111383532 -30887912 + MER117 DNA MER1_type 8 158 -39 1127 214 62 0 chr9 111384321 111384531 -30886913 - MER58A DNA MER1_type 0 224 2 190 339 92 9 chr9 111384616 111384725 -30886719 - L2 LINE L2 -18 3254 3137 2383 125 119 8 chr9 111385581 111385966 -30885478 - MSTA LTR MaLR 0 428 1 472 333 35 5 chr9 111386324 111386522 -30884922 + MIR SINE MIR 2 205 -57 214 184 0 0 chr9 111386609 111386647 -30884797 - MIR SINE MIR -82 180 143 1332 86 86 9 chr9 111386700 111386921 -30884523 + LTR5 LTR ERVK 1 238 -731 214 254 15 72 chr9 111387099 111387190 -30884254 - MIR SINE MIR -82 180 53 8222 54 9 0 chr9 111387190 111388147 -30883297 + LTR5 LTR ERVK 1 966 -3 214 254 15 72 chr9 111388147 111388186 -30883258 - MIR SINE MIR -209 53 13 192 40 0 0 chr9 111388261 111388286 -30883158 + (CAT)n Simple_repeat Simple_repeat 3 27 0 916 261 35 0 chr9 111388525 111388728 -30882716 - MER63A DNA MER1_type 0 210 1 423 310 100 5 chr9 111388728 111388928 -30882516 + MIR SINE MIR 31 249 -13 204 309 181 0 chr9 111389321 111389415 -30882029 - MIR3 SINE MIR -1 207 97 289 284 14 0 chr9 111389792 111389866 -30881578 - MER103 DNA DNA -30 136 62 492 99 0 0 chr9 111390364 111390435 -30881009 + (TGGA)n Simple_repeat Simple_repeat 4 74 0 218 287 23 11 chr9 111390435 111390522 -30880922 + (TGAA)n Simple_repeat Simple_repeat 4 91 0 202 346 20 10 chr9 111390662 111390763 -30880681 - L2 LINE L2 -527 2787 2686 235 318 0 0 chr9 111391251 111391314 -30880130 + L2 LINE L2 3204 3266 -6 526 214 48 40 chr9 111391341 111391467 -30879977 - L2 LINE L2 0 3313 3187 330 324 159 0 chr9 111391497 111391642 -30879802 - MIR3 SINE MIR -2 206 39 215 356 170 0 chr9 111391947 111392082 -30879362 + MIR SINE MIR 53 210 -52 290 282 38 30 chr9 111393414 111393545 -30877899 + MIR3 SINE MIR 65 196 -12 335 289 123 72 chr9 111394970 111395338 -30876106 - L2 LINE L2 -276 2996 2614 246 311 96 15 chr9 111395590 111395725 -30875719 + MIR SINE MIR 117 262 0 185 316 129 39 chr9 111396539 111397130 -30874314 + L2 LINE L2 1853 2496 -818 199 356 183 0 chr9 111397354 111397469 -30873975 + L2 LINE L2 3136 3271 -1 1192 239 147 52 chr9 111397749 111397977 -30873467 - LTR33A LTR ERVL 0 523 318 739 181 100 19 chr9 111397977 111398137 -30873307 + MER69A DNA AcHobo 1 173 -4 1192 239 147 52 chr9 111398137 111398385 -30873059 - LTR33A LTR ERVL -205 318 2 1067 170 11 0 chr9 111399335 111399517 -30871927 - MER20 DNA MER1_type -5 214 31 814 119 0 119 chr9 111399711 111399862 -30871582 + FLAM_A SINE Alu 1 133 0 571 350 45 0 chr9 111400279 111400502 -30870942 - MIR SINE MIR -10 252 20 183 87 0 65 chr9 111401130 111401176 -30870268 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 251 306 159 13 chr9 111401176 111401333 -30870111 - L2 LINE L2 -1 3271 3092 520 318 30 10 chr9 111401701 111401902 -30869542 - MIR SINE MIR -56 206 2 294 248 119 0 chr9 111403815 111403924 -30867520 - L1ME4a LINE L1 -2 6119 5998 379 224 174 6 chr9 111403966 111404127 -30867317 - L1ME4a LINE L1 -210 5911 5724 231 197 16 16 chr9 111404232 111404293 -30867151 - LTR33 LTR ERVL -59 462 402 * 237 269 185 9 chr9 111404279 111404387 -30867057 - LTR33 LTR ERVL -394 127 1 22 0 0 0 chr9 111405046 111405068 -30866376 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr9 111406411 111406433 -30865011 + AT_rich Low_complexity Low_complexity 1 22 0 225 338 25 99 chr9 111408322 111408523 -30862921 + L2 LINE L2 2868 3053 -219 2886 10 0 0 chr9 111408791 111409101 -30862343 + AluYb8 SINE Alu 1 310 -8 431 326 107 5 chr9 111409121 111409317 -30862127 - MIR SINE MIR -18 244 29 482 315 101 78 chr9 111409450 111409909 -30861535 + L2 LINE L2 2459 2950 -322 2507 138 60 17 chr9 111409909 111410323 -30861121 + MSTB1 LTR MaLR 1 432 0 482 315 101 78 chr9 111410323 111410651 -30860793 + L2 LINE L2 2950 3269 -3 215 288 17 0 chr9 111410671 111410730 -30860714 + MIR3 SINE MIR 126 185 -23 254 335 56 62 chr9 111410840 111411001 -30860443 + L3 LINE CR1 1417 1576 -1 239 333 23 11 chr9 111411131 111411218 -30860226 - MER5A DNA MER1_type -15 174 87 224 226 226 59 chr9 111411151 111411253 -30860191 + MER5A DNA MER1_type 47 165 -24 * 2130 92 0 11 chr9 111411265 111411574 -30859870 - AluSc SINE Alu 0 306 1 244 343 48 19 chr9 111411591 111411696 -30859748 + MIR SINE MIR 16 123 -85 228 318 140 0 chr9 111412277 111412384 -30859060 - L2 LINE L2 -1 3312 3191 654 231 82 51 chr9 111412394 111412550 -30858894 + MER3 DNA MER1_type 9 174 -35 1835 94 90 0 chr9 111412550 111412806 -30858638 - AluSp SINE Alu -24 289 11 654 231 82 51 chr9 111412806 111412844 -30858600 + MER3 DNA MER1_type 174 209 0 446 195 31 13 chr9 111412858 111413017 -30858427 + GA-rich Low_complexity Low_complexity 4 165 0 574 291 38 33 chr9 111413982 111414195 -30857249 - MIR SINE MIR -1 261 48 230 301 0 14 chr9 111414426 111414499 -30856945 - L2 LINE L2 0 3272 3201 234 0 0 0 chr9 111417126 111417152 -30854292 + (A)n Simple_repeat Simple_repeat 1 26 0 244 213 0 0 chr9 111417375 111417422 -30854022 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 389 256 66 16 chr9 111417730 111417851 -30853593 + MER94 DNA DNA 2 128 -6 236 304 96 24 chr9 111417910 111418035 -30853409 + MIR SINE MIR 123 256 -6 1941 151 0 10 chr9 111418159 111418464 -30852980 + AluSx SINE Alu 1 302 -10 300 286 98 9 chr9 111418480 111418592 -30852852 - MIR SINE MIR -109 153 32 25 0 0 0 chr9 111419774 111419799 -30851645 + AT_rich Low_complexity Low_complexity 1 25 0 276 334 74 58 chr9 111419833 111420213 -30851231 + L2 LINE L2 1519 1904 -1410 190 260 31 52 chr9 111420284 111420380 -30851064 + L2 LINE L2 2421 2514 -800 279 309 15 81 chr9 111420394 111420530 -30850914 + MIR3 SINE MIR 33 159 -49 449 285 86 49 chr9 111421192 111421429 -30850015 + MIR SINE MIR 6 250 -12 282 319 35 35 chr9 111421460 111421604 -30849840 + MIR SINE MIR 63 206 -56 2676 117 19 6 chr9 111421764 111422123 -30849321 + THE1B LTR MaLR 1 364 0 11942 88 19 29 chr9 111422123 111423718 -30847726 + THE1B-int LTR MaLR 1 1580 0 2708 111 17 8 chr9 111423718 111424079 -30847365 + THE1B LTR MaLR 1 364 0 639 219 44 12 chr9 111424082 111424242 -30847202 - MIR SINE MIR -25 237 73 210 219 16 78 chr9 111424372 111424436 -30847008 + MIR3 SINE MIR 112 171 -37 289 333 51 0 chr9 111425189 111425306 -30846138 + MIR SINE MIR 126 248 -14 256 219 14 41 chr9 111425336 111425409 -30846035 + L3 LINE CR1 1165 1235 -342 1507 161 115 0 chr9 111425679 111425940 -30845504 + AluSx SINE Alu 8 298 -14 1951 149 14 0 chr9 111426069 111426357 -30845087 - AluSx SINE Alu -20 292 1 331 262 28 69 chr9 111426602 111426747 -30844697 + MLT1J LTR MaLR 3 141 -370 410 223 252 7 chr9 111427774 111427913 -30843531 - MER5A DNA MER1_type 0 189 17 450 313 30 55 chr9 111428081 111428282 -30843162 - MIR3 SINE MIR -61 147 2 1252 306 90 16 chr9 111428364 111429443 -30842001 + L1M4 LINE L1 3652 4828 -1318 23 68 0 0 chr9 111430572 111430616 -30840828 + AT_rich Low_complexity Low_complexity 1 44 0 551 99 111 0 chr9 111431328 111431409 -30840035 + 5S rRNA rRNA 1 90 -31 927 228 25 21 chr9 111431490 111431731 -30839713 - L1MEc LINE L1 -6117 279 38 240 203 14 40 chr9 111431760 111431834 -30839610 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 386 178 0 14 chr9 111432764 111432837 -30838607 + MER81 DNA DNA 2 73 -41 308 279 28 50 chr9 111433030 111433209 -30838235 - L1MC/D LINE L1 -2352 5456 5282 376 314 47 55 chr9 111434768 111435193 -30836251 - MLT1L LTR MaLR -2 610 167 254 238 32 0 chr9 111435242 111435305 -30836139 - MLT1L LTR MaLR -537 78 14 411 292 103 66 chr9 111435416 111435659 -30835785 + MIR SINE MIR 5 256 -6 835 188 15 71 chr9 111435712 111435909 -30835535 + MER5A DNA MER1_type 1 186 -3 661 286 152 33 chr9 111436074 111436403 -30835041 + L2 LINE L2 2946 3313 0 222 296 32 40 chr9 111436714 111436839 -30834605 - L3b LINE CR1 -244 1339 1216 284 295 21 0 chr9 111436997 111437092 -30834352 + MIR SINE MIR 48 144 -118 402 268 99 86 chr9 111437383 111437756 -30833688 + LTR16B LTR ERVL 35 412 -52 351 284 107 23 chr9 111438093 111438276 -30833168 - MIR SINE MIR -37 225 26 2137 99 0 27 chr9 111438303 111438597 -30832847 + AluSx SINE Alu 1 286 -26 221 331 63 16 chr9 111439103 111439230 -30832214 + L2 LINE L2 2934 3066 -206 225 346 62 17 chr9 111439333 111439512 -30831932 + L2 LINE L2 2683 2869 -445 200 29 0 59 chr9 111439709 111439743 -30831701 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 519 169 45 0 chr9 111439745 111439834 -30831610 - FLAM_A SINE Alu -28 114 22 236 204 19 0 chr9 111439849 111439903 -30831541 + (CACAC)n Simple_repeat Simple_repeat 2 56 0 1084 276 66 42 chr9 111440949 111441431 -30830013 - MLT1J LTR MaLR -17 494 1 372 296 88 19 chr9 111442866 111443025 -30828419 - MIR SINE MIR -73 189 20 436 273 84 7 chr9 111443475 111443629 -30827815 - MIR SINE MIR -16 246 81 3813 221 48 9 chr9 111443661 111444522 -30826922 - MER97a DNA MER1_type? 0 894 1 24 0 0 0 chr9 111445170 111445194 -30826250 + AT_rich Low_complexity Low_complexity 1 24 0 455 307 78 32 chr9 111445572 111445790 -30825654 - L3 LINE CR1 -106 1471 1244 30 45 0 0 chr9 111446307 111446351 -30825093 + AT_rich Low_complexity Low_complexity 1 44 0 287 65 22 0 chr9 111446935 111446981 -30824463 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1817 164 4 0 chr9 111446985 111447266 -30824178 - AluJo SINE Alu -30 282 1 198 268 0 18 chr9 111447267 111447323 -30824121 - MIR SINE MIR -207 55 1 195 235 160 42 chr9 111448182 111448301 -30823143 - MIR SINE MIR -7 255 123 577 286 0 39 chr9 111448461 111448664 -30822780 - L2 LINE L2 -1 3312 3118 488 302 24 6 chr9 111449518 111449687 -30821757 + MIR SINE MIR 20 191 -71 2009 152 3 0 chr9 111449727 111450030 -30821414 + AluSx SINE Alu 1 304 -8 222 118 0 0 chr9 111450261 111450295 -30821149 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 180 281 56 11 chr9 111450320 111450409 -30821035 - L2 LINE L2 0 3272 3180 338 257 48 126 chr9 111450496 111450702 -30820742 - LTR67 LTR ERVL -7 550 361 503 309 45 0 chr9 111450968 111451146 -30820298 - MIR SINE MIR -14 248 63 604 290 74 46 chr9 111452195 111452630 -30818814 + MLT1J LTR MaLR 65 511 0 284 281 122 7 chr9 111452667 111452806 -30818638 + MIR SINE MIR 32 186 -76 1842 158 0 0 chr9 111452878 111453151 -30818293 - AluJo SINE Alu -30 282 10 2373 115 133 16 chr9 111453248 111453631 -30817813 + MSTA LTR MaLR 1 428 0 9986 153 20 4 chr9 111453631 111455256 -30816188 + MSTA-int LTR MaLR 1 1651 0 2512 128 70 8 chr9 111455256 111455654 -30815790 + MSTA LTR MaLR 1 423 -5 362 98 20 0 chr9 111455754 111455805 -30815639 + MSTA LTR MaLR 377 428 0 1166 200 14 0 chr9 111457391 111457606 -30813838 - MER20 DNA MER1_type 0 219 2 617 271 70 22 chr9 111457611 111457840 -30813604 + MIR SINE MIR 13 252 -10 324 333 40 0 chr9 111457940 111458066 -30813378 - L2 LINE L2 -9 3263 3133 498 207 112 0 chr9 111458956 111459072 -30812372 + MER5A DNA MER1_type 59 187 -2 587 320 116 17 chr9 111459835 111460188 -30811256 + Tigger8 DNA MER2_type 273 660 -6 320 137 0 0 chr9 111461447 111461498 -30809946 + L2 LINE L2 3263 3313 0 258 319 0 0 chr9 111461573 111461642 -30809802 - MIR3 SINE MIR -50 158 90 2068 190 36 40 chr9 111461652 111461862 -30809582 + MLT1C LTR MaLR 1 210 -257 2324 100 0 7 chr9 111461862 111462172 -30809272 + AluSx SINE Alu 1 308 -4 2068 190 36 40 chr9 111462172 111462430 -30809014 + MLT1C LTR MaLR 210 467 0 287 375 7 7 chr9 111462740 111462876 -30808568 - L2 LINE L2 -211 3061 2926 333 236 82 9 chr9 111464411 111464521 -30806923 + Charlie7 DNA MER1_type 2495 2612 0 739 333 111 14 chr9 111464691 111465186 -30806258 + L3 LINE CR1 983 1525 -52 361 236 8 81 chr9 111465959 111466082 -30805362 - MIR SINE MIR -70 192 79 219 327 101 48 chr9 111466888 111467136 -30804308 - L2 LINE L2 -36 3236 2976 220 269 77 67 chr9 111467948 111468052 -30803392 - L2 LINE L2 0 3313 3209 364 257 48 9 chr9 111468199 111468304 -30803140 + L2 LINE L2 3162 3270 -2 679 128 0 83 chr9 111468599 111468732 -30802712 - FRAM SINE Alu -15 161 40 201 305 105 0 chr9 111469193 111469298 -30802146 + MIR SINE MIR 47 162 -100 299 313 20 10 chr9 111469725 111469824 -30801620 + L2 LINE L2 2944 3043 -229 722 255 125 65 chr9 111470146 111470291 -30801153 + MLT1F LTR MaLR 72 207 -335 787 202 29 109 chr9 111470291 111470529 -30800915 + MER20 DNA MER1_type 1 219 0 722 255 125 65 chr9 111470529 111470838 -30800606 + MLT1F LTR MaLR 207 538 -4 222 118 0 0 chr9 111470898 111470932 -30800512 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1938 122 7 7 chr9 111470933 111471212 -30800232 - AluJb SINE Alu -33 279 1 213 200 0 55 chr9 111471860 111471915 -30799529 - L2 LINE L2 -3 3269 3218 1631 174 12 20 chr9 111472082 111472489 -30798955 - L1MA9 LINE L1 0 6312 5860 692 273 127 66 chr9 111472729 111472801 -30798643 - MLT1I LTR MaLR -8 401 335 2381 82 0 31 chr9 111472801 111473118 -30798326 + AluY SINE Alu 1 307 -4 692 273 127 66 chr9 111473118 111473423 -30798021 - MLT1I LTR MaLR -74 335 1 418 195 26 44 chr9 111474125 111474225 -30797219 - MIR SINE MIR -20 242 143 1584 109 0 51 chr9 111474225 111474481 -30796963 - AluSg/x SINE Alu -4 308 66 418 195 26 44 chr9 111474481 111474493 -30796951 - MIR SINE MIR -119 143 132 186 43 0 0 chr9 111474561 111474584 -30796860 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 825 165 0 0 chr9 111474584 111474705 -30796739 - FLAM_C SINE Alu -22 121 1 335 308 37 0 chr9 111474706 111474813 -30796631 - MIR SINE MIR -146 116 6 193 302 58 22 chr9 111475898 111476037 -30795407 + MIR SINE MIR 48 191 -71 268 329 30 16 chr9 111477205 111477349 -30794095 + MIR SINE MIR 33 175 -65 360 211 89 0 chr9 111477389 111477479 -30793965 + MIR SINE MIR 58 155 -107 520 219 63 18 chr9 111477933 111478140 -30793304 - MIR SINE MIR -46 216 3 2415 98 0 0 chr9 111478773 111479080 -30792364 + AluSq SINE Alu 1 307 -6 232 333 53 15 chr9 111479090 111479222 -30792222 - MIR SINE MIR -117 145 9 201 296 70 0 chr9 111479687 111479758 -30791686 + MIR SINE MIR 37 112 -96 340 258 184 55 chr9 111480000 111480217 -30791227 - MIR SINE MIR -12 250 6 1001 283 40 63 chr9 111480293 111480766 -30790678 - LTR16B LTR ERVL 0 464 3 2074 209 116 28 chr9 111481109 111481654 -30789790 + MLT1E LTR MaLR 1 593 0 276 216 36 29 chr9 111482126 111482265 -30789179 + (TA)n Simple_repeat Simple_repeat 2 141 0 281 160 0 0 chr9 111482267 111482317 -30789127 - MER4B-int LTR ERV1 -5562 1196 1147 542 266 120 68 chr9 111482487 111483035 -30788409 + L1ME4a LINE L1 5292 5868 -253 2477 84 0 0 chr9 111483062 111483359 -30788085 + AluSx SINE Alu 1 297 -15 326 95 0 81 chr9 111484100 111484174 -30787270 - L1MC2 LINE L1 -2 6342 6275 1508 144 58 38 chr9 111484182 111484473 -30786971 + AluJb SINE Alu 3 299 -13 252 283 225 0 chr9 111484746 111484866 -30786578 + MIR SINE MIR 103 249 -13 310 321 30 8 chr9 111485960 111486091 -30785353 + MIR SINE MIR 73 206 -56 352 271 14 69 chr9 111486138 111486282 -30785162 - L2 LINE L2 0 3272 3137 594 199 140 0 chr9 111486311 111486447 -30784997 - MER58B DNA MER1_type 0 341 187 1115 78 0 0 chr9 111486643 111486784 -30784660 + AluY SINE Alu 153 293 -18 1668 65 5 5 chr9 111486795 111487012 -30784432 + L1PA8 LINE L1 5956 6172 0 2168 108 27 0 chr9 111487029 111487325 -30784119 + AluSx SINE Alu 1 304 -8 403 228 70 18 chr9 111487344 111487458 -30783986 - MER103 DNA DNA -44 122 3 180 219 0 0 chr9 111487843 111487884 -30783560 + (CA)n Simple_repeat Simple_repeat 2 42 0 1209 128 11 0 chr9 111488421 111488608 -30782836 - MER5A DNA MER1_type 0 189 1 2438 184 71 31 chr9 111489468 111490044 -30781400 - L1MD2 LINE L1 -10 6349 5751 749 247 35 6 chr9 111490198 111490372 -30781072 - MER58A DNA MER1_type 0 224 46 1554 211 3 19 chr9 111490724 111491036 -30780408 + AluJb SINE Alu 1 307 -5 559 171 11 33 chr9 111491071 111491252 -30780192 + GA-rich Low_complexity Low_complexity 1 177 0 486 305 84 26 chr9 111491321 111491547 -30779897 + MIR SINE MIR 23 261 -1 275 143 36 36 chr9 111492221 111492277 -30779167 - MLT1L LTR MaLR -76 539 484 255 312 81 43 chr9 111492550 111493107 -30778337 - L1M4 LINE L1 -1085 5061 4484 235 191 0 0 chr9 111493502 111493544 -30777900 - MER116 DNA Mariner 0 80 39 311 338 95 31 chr9 111493647 111494067 -30777377 - L2 LINE L2 -2 3311 2865 1620 158 58 29 chr9 111494186 111494534 -30776910 + MER46B DNA MER2_type 4 236 0 450 262 75 59 chr9 111497231 111497418 -30774026 + MIR SINE MIR 70 259 -3 257 281 0 0 chr9 111498151 111498215 -30773229 + MIR SINE MIR 49 112 -150 185 313 45 0 chr9 111499776 111499843 -30771601 - MIR3 SINE MIR -45 163 94 464 262 87 29 chr9 111499857 111500029 -30771415 - MIR SINE MIR 0 262 81 243 284 32 11 chr9 111500120 111500215 -30771229 + MIR SINE MIR 112 208 -54 207 325 185 0 chr9 111500663 111500820 -30770624 + MER91A DNA MER1_type 1 186 -10 1112 206 94 165 chr9 111501232 111501776 -30769668 - MLT1F1 LTR MaLR 0 567 63 463 271 182 22 chr9 111501790 111502015 -30769429 + MLT1J LTR MaLR 235 495 -16 297 280 80 0 chr9 111502088 111502188 -30769256 - MIR SINE MIR -67 141 34 337 323 0 24 chr9 111503373 111503497 -30767947 - MIR SINE MIR -59 149 29 656 277 118 60 chr9 111503700 111503931 -30767513 - MER102b DNA MER1_type -1095 333 78 1942 146 3 10 chr9 111503931 111504225 -30767219 - AluJo SINE Alu -20 292 1 656 277 118 60 chr9 111504225 111504307 -30767137 - MER102b DNA MER1_type -1350 78 2 275 179 0 18 chr9 111504427 111504483 -30766961 + L2 LINE L2 3005 3059 -254 1233 288 40 17 chr9 111504485 111504832 -30766612 + MLT1J LTR MaLR 16 370 -141 5846 75 42 12 chr9 111504832 111505675 -30765769 + L1P3 LINE L1 920 1776 -4685 * 36639 96 15 8 chr9 111505663 111511762 -30759682 + L1PA7 LINE L1 13 6149 -5 489 226 127 32 chr9 111511890 111512111 -30759333 + L2 LINE L2 3063 3304 -9 228 278 235 5 chr9 111513214 111513401 -30758043 - MIR SINE MIR -13 249 20 1187 198 104 84 chr9 111513878 111514065 -30757379 + MLT1D LTR MaLR 5 187 -318 2178 139 0 0 chr9 111514065 111514367 -30757077 + AluSx SINE Alu 1 302 -10 1236 170 5 0 chr9 111514372 111514578 -30756866 + L1MB1 LINE L1 5962 6168 0 1187 198 104 84 chr9 111514578 111514873 -30756571 + MLT1D LTR MaLR 190 503 -2 21 0 0 0 chr9 111516101 111516122 -30755322 + AT_rich Low_complexity Low_complexity 1 21 0 612 276 168 28 chr9 111517079 111517466 -30753978 + L1MCc LINE L1 25 465 -5958 1456 265 51 26 chr9 111517824 111518018 -30753426 + L1MCc LINE L1 2594 2782 -4340 1124 185 58 0 chr9 111518018 111518223 -30753221 + MER20 DNA MER1_type 2 218 -1 1456 265 51 26 chr9 111518223 111518598 -30752846 + L1MCc LINE L1 2782 3177 -3945 470 202 32 16 chr9 111518628 111518752 -30752692 + L1PA16 LINE L1 6025 6150 -16 * 2086 265 72 4 chr9 111518738 111519435 -30752009 + L1MCc LINE L1 3135 3878 -3063 11282 167 37 31 chr9 111519601 111521561 -30749883 + L1M1 LINE L1 16 1963 -5602 1512 186 0 8 chr9 111521561 111521825 -30749619 + AluJb SINE Alu 42 303 -9 11282 167 37 31 chr9 111521825 111521933 -30749511 + L1M1 LINE L1 1963 2069 -5496 2161 134 16 0 chr9 111521933 111522238 -30749206 + AluSx SINE Alu 1 310 -2 11282 167 37 31 chr9 111522238 111522373 -30749071 + L1M1 LINE L1 2069 2202 -5363 1814 154 21 4 chr9 111522373 111522652 -30748792 + AluSx SINE Alu 7 290 -22 11282 167 37 31 chr9 111522652 111524327 -30747117 + L1M1 LINE L1 2202 4284 -3281 655 12 12 0 chr9 111524329 111524411 -30747033 + AluY SINE Alu 2 84 -226 929 61 9 0 chr9 111524512 111524627 -30746817 - AluSq/x SINE Alu -196 116 1 202 348 58 14 chr9 111524811 111524949 -30746495 - MIR3 SINE MIR -62 146 3 342 0 0 0 chr9 111525016 111525054 -30746390 + (TA)n Simple_repeat Simple_repeat 2 39 0 279 0 0 0 chr9 111525054 111525085 -30746359 + (T)n Simple_repeat Simple_repeat 1 31 0 370 227 14 71 chr9 111525941 111526082 -30745362 - L1ME3 LINE L1 -9 6153 6021 2324 113 3 0 chr9 111526195 111526505 -30744939 - AluSq SINE Alu 0 313 3 566 272 25 39 chr9 111527205 111527455 -30743989 - MIR SINE MIR -12 250 4 691 216 144 115 chr9 111528240 111528684 -30742760 - LTR16A1 LTR ERVL 0 457 1 233 296 65 9 chr9 111528819 111528927 -30742517 + MIR SINE MIR 28 141 -121 185 182 0 0 chr9 111529063 111529096 -30742348 - MIR SINE MIR -107 155 123 2432 69 3 10 chr9 111529310 111529614 -30741830 + AluY SINE Alu 1 302 -9 2156 140 47 0 chr9 111529628 111529992 -30741452 + L1MC1 LINE L1 5934 6314 -19 187 260 247 0 chr9 111530007 111530157 -30741287 - MIR SINE MIR -6 256 70 183 100 0 0 chr9 111530659 111530689 -30740755 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 270 207 24 49 chr9 111531173 111531255 -30740189 + MER96B DNA MER1_type? 8 87 -330 285 29 0 0 chr9 111531256 111531290 -30740154 + (CA)n Simple_repeat Simple_repeat 2 35 0 429 167 0 0 chr9 111531291 111531369 -30740075 + (TA)n Simple_repeat Simple_repeat 1 78 0 461 116 43 7 chr9 111531404 111531542 -30739902 + (TA)n Simple_repeat Simple_repeat 1 143 0 1702 135 4 23 chr9 111531561 111531820 -30739624 - AluSx SINE Alu -58 254 1 478 191 186 29 chr9 111531820 111532024 -30739420 - MER96B DNA MER1_type? -80 337 102 317 275 35 130 chr9 111532024 111532340 -30739104 - L2 LINE L2 -101 3171 2886 2124 92 4 7 chr9 111532387 111532691 -30738753 + AluSg SINE Alu 1 303 0 529 233 48 44 chr9 111532893 111533099 -30738345 - L1M4 LINE L1 -1595 4551 4345 2772 191 72 81 chr9 111533131 111534023 -30737421 - L1ME2 LINE L1 -17 6147 5264 3888 229 132 37 chr9 111534219 111534473 -30736971 - L1ME2 LINE L1 -1236 4910 4682 2277 98 3 3 chr9 111534473 111534769 -30736675 + AluSp SINE Alu 1 296 -17 3888 229 132 37 chr9 111534769 111535004 -30736440 - L1ME2 LINE L1 -1464 4682 4471 2407 84 0 0 chr9 111535004 111535300 -30736144 - AluY SINE Alu -15 296 1 3888 229 132 37 chr9 111535300 111536349 -30735095 - L1ME2 LINE L1 -1675 4471 3196 2072 120 0 10 chr9 111536349 111536640 -30734804 - AluSc SINE Alu -21 288 1 3888 229 132 37 chr9 111536640 111536777 -30734667 - L1ME2 LINE L1 -2950 3196 3073 1268 71 33 0 chr9 111536783 111536965 -30734479 - L1MA3 LINE L1 -1 6304 6117 1006 119 0 79 chr9 111536966 111537143 -30734301 - THE1B LTR MaLR -8 356 194 11966 154 42 21 chr9 111537143 111539755 -30731689 - L1MA3 LINE L1 -755 5391 2851 7799 29 0 0 chr9 111539756 111541030 -30730414 - L1PA3 LINE L1 -5 6150 4877 2169 18 21 0 chr9 111541030 111541315 -30730129 + L1P LINE L1 3797 4060 -2086 267 348 7 29 chr9 111541492 111541630 -30729814 + MLT1K LTR MaLR 448 582 -6 311 342 34 0 chr9 111541871 111541988 -30729456 + L2 LINE L2 3134 3254 -18 * 410 210 51 58 chr9 111541974 111542112 -30729332 - MIR SINE MIR -52 210 74 2233 94 19 10 chr9 111542505 111542813 -30728631 - AluSq SINE Alu -2 311 1 342 255 25 102 chr9 111542906 111543141 -30728303 + L2 LINE L2 2842 3058 -214 837 222 74 0 chr9 111544068 111544257 -30727187 + MLT1A1 LTR MaLR 163 365 0 2980 178 94 24 chr9 111544278 111544957 -30726487 + LTR8A LTR ERV1 1 727 0 2069 196 63 73 chr9 111545609 111546227 -30725217 + LTR9 LTR ERV1 1 612 0 403 222 136 34 chr9 111546465 111546641 -30724803 - MIR SINE MIR -49 213 20 196 351 26 0 chr9 111547077 111547154 -30724290 - MIR3 SINE MIR -15 193 115 270 297 90 13 chr9 111547910 111548065 -30723379 - MIR SINE MIR -11 251 85 5809 106 32 2 chr9 111548287 111549891 -30721553 + L1PA15 LINE L1 4525 6155 -10 2851 233 35 39 chr9 111549901 111549915 -30721529 + L1M1 LINE L1 3554 3567 -3998 2424 145 41 5 chr9 111549915 111550328 -30721116 + MSTA LTR MaLR 1 428 0 2851 233 35 39 chr9 111550328 111551191 -30720253 + L1M1 LINE L1 3567 4444 -3121 694 215 60 30 chr9 111551601 111551866 -30719578 + L1M1 LINE L1 4441 4713 -2852 444 141 12 35 chr9 111551871 111551956 -30719488 + AluJ/FLAM SINE Alu 2 84 -228 1630 269 85 36 chr9 111552365 111552583 -30718861 + L2 LINE L2 2322 2528 -785 2312 86 10 0 chr9 111552583 111552875 -30718569 - AluSc SINE Alu -14 295 1 1630 269 85 36 chr9 111552875 111553530 -30717914 + L2 LINE L2 2528 3245 -68 21 0 0 0 chr9 111553553 111553574 -30717870 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 55 44 chr9 111554989 111555080 -30716364 - MIR SINE MIR -162 100 9 331 330 6 45 chr9 111556498 111556862 -30714582 + GA-rich Low_complexity Low_complexity 1 349 0 369 234 156 21 chr9 111556928 111557069 -30714375 + MER5A DNA MER1_type 30 189 0 205 275 0 58 chr9 111557384 111557453 -30713991 + L2 LINE L2 3198 3262 -10 332 283 43 11 chr9 111558087 111558179 -30713265 - L2 LINE L2 -10 3303 3209 2881 128 2 9 chr9 111558374 111558811 -30712633 - MER57B LTR ERV1 0 434 1 580 198 32 24 chr9 111559042 111559168 -30712276 + MLT1A1 LTR MaLR 1 127 -238 432 91 30 0 chr9 111559485 111559551 -30711893 + Tigger2 DNA MER2_type 1 68 -2650 2498 134 53 12 chr9 111559551 111559739 -30711705 + Tigger2 DNA MER2_type 2291 2470 -248 1909 142 3 41 chr9 111559739 111560057 -30711387 - AluSx SINE Alu -6 306 1 2498 134 53 12 chr9 111560057 111560279 -30711165 + Tigger2 DNA MER2_type 2470 2718 0 514 304 87 49 chr9 111560814 111561205 -30710239 - L2 LINE L2 0 3313 2908 358 298 116 5 chr9 111561496 111561694 -30709750 + MIR SINE MIR 43 262 0 233 318 11 11 chr9 111561855 111561943 -30709501 + MIR SINE MIR 36 123 -85 189 0 0 0 chr9 111561945 111561966 -30709478 + (A)n Simple_repeat Simple_repeat 1 21 0 439 245 73 39 chr9 111562127 111562305 -30709139 + MER20B DNA MER1_type 36 219 0 449 197 225 42 chr9 111562769 111563041 -30708403 + MLT1A1 LTR MaLR 231 555 0 2042 246 61 30 chr9 111563424 111563984 -30707460 + MLT1E LTR MaLR 1 577 -16 21 0 0 0 chr9 111564064 111564085 -30707359 + AT_rich Low_complexity Low_complexity 1 21 0 1540 184 70 21 chr9 111564209 111564536 -30706908 - MER2 DNA MER2_type 0 344 2 413 314 92 13 chr9 111564541 111564780 -30706664 - L1MC4a LINE L1 -1886 5922 5665 232 359 71 6 chr9 111564788 111564958 -30706486 - L1MC4a LINE L1 -2192 5616 5436 307 282 68 17 chr9 111565526 111565643 -30705801 - MIR SINE MIR -82 180 58 313 315 0 46 chr9 111565742 111565872 -30705572 + MIR3 SINE MIR 83 206 -2 471 276 32 22 chr9 111566484 111566669 -30704775 - L1ME4a LINE L1 -180 5941 5755 2366 83 0 29 chr9 111566718 111567031 -30704413 + AluY SINE Alu 3 306 -5 886 221 50 78 chr9 111567061 111567446 -30703998 - MLT1G1 LTR MaLR 0 595 151 2187 101 0 3 chr9 111567446 111567734 -30703710 + AluSq SINE Alu 10 296 -17 886 221 50 78 chr9 111567734 111567811 -30703633 - MLT1G1 LTR MaLR -444 151 73 216 194 42 14 chr9 111569612 111569684 -30701760 + (TGGG)n Simple_repeat Simple_repeat 2 75 0 228 273 15 0 chr9 111569885 111569951 -30701493 + L2 LINE L2 3246 3312 -1 225 288 17 0 chr9 111569979 111570038 -30701406 + GA-rich Low_complexity Low_complexity 3 62 0 580 258 60 18 chr9 111570114 111570331 -30701113 - MIR SINE MIR -17 245 20 2899 193 37 48 chr9 111570431 111571136 -30700308 + MER72 LTR ERV1 26 722 0 373 319 9 0 chr9 111571415 111571528 -30699916 - L2 LINE L2 -540 2774 2661 202 264 206 7 chr9 111571780 111571935 -30699509 - L2 LINE L2 -163 3109 2924 349 263 76 0 chr9 111573920 111574045 -30697399 - MIR SINE MIR -68 140 1 2452 72 0 3 chr9 111575616 111575922 -30695522 + AluY SINE Alu 2 306 -5 414 292 124 15 chr9 111575955 111576092 -30695352 + MIR3 SINE MIR 14 165 -43 1491 198 28 100 chr9 111576112 111576355 -30695089 - MER63B DNA MER1_type -626 436 242 874 198 125 5 chr9 111576355 111576547 -30694897 - MER58C DNA MER1_type 0 215 1 1491 198 28 100 chr9 111576547 111576773 -30694671 - MER63B DNA MER1_type -820 242 1 242 127 4 26 chr9 111577866 111577922 -30693522 + L1ME3A LINE L1 5388 5442 -720 * 939 202 65 16 chr9 111577920 111578167 -30693277 + L1MCc LINE L1 35 293 -6130 856 132 31 25 chr9 111578168 111578327 -30693117 - L1MA4 LINE L1 -1 6299 6140 2488 241 63 20 chr9 111578450 111579148 -30692296 + L1ME3A LINE L1 5436 6163 -7 1503 175 84 10 chr9 111579322 111579619 -30691825 - L1MD2 LINE L1 -15 6344 6026 1297 190 51 0 chr9 111579618 111579871 -30691573 + L1MD2 LINE L1 5761 6026 -333 * 224 285 89 42 chr9 111580710 111580924 -30690520 - L2 LINE L2 -222 3050 2827 1990 161 39 11 chr9 111581830 111582185 -30689259 - MLT1A1 LTR MaLR 0 365 1 297 291 93 13 chr9 111583147 111583298 -30688146 + L2 LINE L2 2878 3040 -232 247 239 14 42 chr9 111583456 111583527 -30687917 + L2 LINE L2 3205 3273 -40 218 307 63 16 chr9 111583781 111583908 -30687536 + MIR SINE MIR 76 208 -54 2024 130 72 23 chr9 111584032 111584379 -30687065 + THE1B LTR MaLR 1 364 0 701 229 33 0 chr9 111584465 111584618 -30686826 + L1ME3A LINE L1 5999 6156 -14 1998 188 177 133 chr9 111584655 111585632 -30685812 + LTR28 LTR ERV1 1 1020 0 38566 174 49 35 chr9 111585635 111592617 -30678827 + LTR28-int LTR ERV1 6 7090 -1 2111 187 249 104 chr9 111592626 111593517 -30677927 + LTR28 LTR ERV1 1 1020 0 1724 151 7 26 chr9 111593679 111593984 -30677460 + AluJb SINE Alu 3 301 -11 1142 151 107 13 chr9 111594335 111594560 -30676884 + LTR8A LTR ERV1 1 246 -481 689 150 44 12 chr9 111594721 111594881 -30676563 - MER3 DNA MER1_type 0 2399 2235 546 223 0 15 chr9 111594885 111595015 -30676429 - MER3 DNA MER1_type -41 168 41 3132 74 14 27 chr9 111595114 111595558 -30675886 + L1PA8 LINE L1 5735 6172 0 386 274 72 39 chr9 111595655 111595808 -30675636 + MIR SINE MIR 41 198 -64 267 368 123 0 chr9 111595851 111596006 -30675438 - MIR SINE MIR -78 184 11 1176 240 34 54 chr9 111596557 111596944 -30674500 - MLT1C LTR MaLR -88 379 1 1768 235 141 105 chr9 111596952 111597780 -30673664 + L2 LINE L2 1542 2502 -812 335 266 13 13 chr9 111597780 111597859 -30673585 - LTR67 LTR ERVL -363 194 116 1768 235 141 105 chr9 111597859 111598126 -30673318 + L2 LINE L2 2502 2758 -556 2173 119 0 0 chr9 111598284 111598587 -30672857 + AluSq SINE Alu 1 303 -10 478 263 201 21 chr9 111598613 111598902 -30672542 + L1MC4 LINE L1 7702 8042 0 1822 113 0 4 chr9 111598908 111599165 -30672279 + AluSx SINE Alu 1 256 -56 7076 121 72 48 chr9 111599268 111600445 -30670999 - THE1B-int LTR MaLR -374 1206 1 1837 132 4 0 chr9 111600445 111600703 -30670741 - THE1B LTR MaLR 0 364 106 2854 201 54 20 chr9 111600851 111601498 -30669946 + LTR65 LTR ERV1 1 669 0 311 80 40 0 chr9 111602562 111602612 -30668832 + AluSx SINE Alu 248 299 -2 22 56 0 0 chr9 111602727 111602763 -30668681 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 111602783 111602804 -30668640 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 111602959 111602980 -30668464 + AT_rich Low_complexity Low_complexity 1 21 0 21 95 0 0 chr9 111603325 111603388 -30668056 + AT_rich Low_complexity Low_complexity 1 63 0 6118 122 33 7 chr9 111603497 111604401 -30667043 + L1PB1 LINE L1 4859 5806 -345 324 0 0 0 chr9 111604401 111604437 -30667007 + (CA)n Simple_repeat Simple_repeat 2 37 0 6118 122 33 7 chr9 111604437 111604793 -30666651 + L1PB1 LINE L1 5806 6151 0 1953 160 47 0 chr9 111604950 111605288 -30666156 - MER46B DNA MER2_type -5 231 3 1370 293 70 64 chr9 111605758 111606541 -30664903 + MER110-int LTR ERV1 2730 3517 -1130 1006 151 0 0 chr9 111607150 111607309 -30664135 + AluSg/x SINE Alu 151 309 -1 2022 122 0 0 chr9 111608209 111608497 -30662947 - AluSx SINE Alu -24 288 1 1393 158 132 8 chr9 111609273 111609539 -30661905 + AluJb SINE Alu 1 299 -3 279 298 175 0 chr9 111609652 111609823 -30661621 - L1MC4a LINE L1 -1135 6673 6473 794 136 30 15 chr9 111609840 111609972 -30661472 - AluJb SINE Alu -177 135 2 448 243 120 50 chr9 111609985 111610343 -30661101 - L1MC4a LINE L1 -1351 6457 6075 348 277 71 0 chr9 111610492 111610604 -30660840 + MIR SINE MIR 92 211 -51 975 236 126 44 chr9 111611503 111611939 -30659505 - MLT1J LTR MaLR -37 474 3 345 306 41 25 chr9 111612889 111613010 -30658434 + MIR SINE MIR 21 143 -65 2711 220 38 38 chr9 111613097 111613734 -30657710 + MER21B LTR ERV1 1 637 -226 371 139 42 14 chr9 111613734 111613806 -30657638 + MER84 LTR ERVI 1 74 -433 3201 104 21 48 chr9 111613806 111614192 -30657252 + MER84 LTR ERV1 2 372 -135 1989 135 0 3 chr9 111614192 111614495 -30656949 - AluSx SINE Alu -10 302 1 3201 104 21 48 chr9 111614495 111614628 -30656816 + MER84 LTR ERV1 372 507 0 625 254 40 40 chr9 111614628 111614805 -30656639 + MER21B LTR ERV1 633 809 -54 277 87 0 22 chr9 111615126 111615172 -30656272 + L1P4 LINE L1 5403 5447 -716 1087 122 0 0 chr9 111615273 111615429 -30656015 + AluSq SINE Alu 142 297 -16 1658 145 24 14 chr9 111616034 111616323 -30655121 - AluSx SINE Alu -18 294 3 651 187 15 30 chr9 111616360 111616494 -30654950 - MIR SINE MIR -14 248 117 236 278 0 0 chr9 111616576 111616630 -30654814 + L2 LINE L2 3007 3060 -212 407 138 9 92 chr9 111616693 111616802 -30654642 + MER53 DNA DNA 89 188 -1 854 102 0 0 chr9 111616956 111617074 -30654370 + AluSg/x SINE Alu 178 295 -14 193 284 61 95 chr9 111617189 111617337 -30654107 + MIR SINE MIR 120 262 0 1847 144 147 11 chr9 111617729 111618103 -30653341 - MSTA LTR MaLR -3 425 1 259 286 8 13 chr9 111618234 111618355 -30653089 + MER5A DNA MER1_type 14 185 -4 628 215 16 8 chr9 111618440 111618561 -30652883 - MER5B DNA MER1_type -3 175 54 320 100 0 20 chr9 111618600 111618650 -30652794 - MSTA LTR MaLR -379 49 1 1901 150 7 0 chr9 111618841 111619141 -30652303 - AluJb SINE Alu -10 302 1 292 213 46 56 chr9 111620149 111620257 -30651187 + MIR SINE MIR 100 206 -56 326 316 38 8 chr9 111620359 111620492 -30650952 - MIR SINE MIR -50 212 76 532 216 24 56 chr9 111620574 111620699 -30650745 - MER5B DNA MER1_type -4 174 54 4443 156 43 55 chr9 111620729 111621195 -30650249 - L1MD1 LINE L1 -1 6241 5771 1573 173 14 24 chr9 111621195 111621490 -30649954 - AluJo SINE Alu -20 292 1 4443 156 43 55 chr9 111621490 111622092 -30649352 - L1MD1 LINE L1 -471 5771 5202 2065 83 60 20 chr9 111622092 111622393 -30649051 - AluSp SINE Alu 0 313 1 4443 156 43 55 chr9 111622393 111622408 -30649036 - L1MD1 LINE L1 -1040 5202 5188 2527 102 3 25 chr9 111622458 111622820 -30648624 - THE1A LTR MaLR -1 354 1 11690 101 1 8 chr9 111622820 111623982 -30647462 - THE1A-int LTR MaLR 0 1580 428 1969 103 33 0 chr9 111623982 111624274 -30647170 + AluSg SINE Alu 1 301 0 11690 101 1 8 chr9 111624274 111624672 -30646772 - THE1A-int LTR MaLR -1152 428 29 677 129 0 10 chr9 111624678 111624779 -30646665 - THE1A LTR MaLR 0 364 265 254 91 0 0 chr9 111624773 111624806 -30646638 - Alu SINE Alu -268 35 3 * 2113 111 13 0 chr9 111624838 111625145 -30646299 + AluSq SINE Alu 1 311 -2 478 235 56 47 chr9 111625501 111625676 -30645768 + MIR SINE MIR 36 210 -52 348 342 34 0 chr9 111625662 111625779 -30645665 - L2 LINE L2 -18 3254 3134 * 661 317 108 47 chr9 111626020 111626512 -30644932 - MLT1K LTR MaLR -6 582 61 250 299 0 0 chr9 111627376 111627443 -30644001 + MIR SINE MIR 72 138 -70 234 314 0 0 chr9 111627614 111627684 -30643760 - Charlie8 DNA MER1_type -2345 72 3 234 300 138 0 chr9 111628267 111628347 -30643097 + L2 LINE L2 3167 3257 -15 291 243 118 46 chr9 111628404 111628482 -30642962 + MIR3 SINE MIR 34 105 -103 1831 150 7 3 chr9 111628482 111628782 -30642662 - AluSx SINE Alu -11 301 1 291 243 118 46 chr9 111628782 111628855 -30642589 + MIR3 SINE MIR 105 196 -12 201 173 58 0 chr9 111631180 111631232 -30640212 - MIR SINE MIR -73 135 81 406 282 82 78 chr9 111631485 111631813 -30639631 - L2 LINE L2 -214 3058 2701 2286 88 0 10 chr9 111631813 111632121 -30639323 + AluSg1 SINE Alu 1 305 -4 406 282 82 78 chr9 111632121 111632303 -30639141 - L2 LINE L2 -571 2701 2521 199 228 105 0 chr9 111633073 111633130 -30638314 + MER5A DNA MER1_type 98 160 -29 2431 203 34 0 chr9 111633956 111634430 -30637014 + MLT1D LTR MaLR 16 505 0 483 308 128 0 chr9 111635267 111635501 -30635943 + L2 LINE L2 2648 2911 -403 636 261 141 20 chr9 111635501 111635700 -30635744 - MER58A DNA MER1_type -1 223 1 511 234 382 26 chr9 111635701 111636005 -30635439 + L2 LINE L2 2902 3313 0 181 259 138 17 chr9 111638700 111638758 -30632686 + MIR SINE MIR 21 85 -177 591 156 115 16 chr9 111639327 111639449 -30631995 - Charlie4 DNA MER1_type -5 1956 1823 1016 207 13 48 chr9 111639755 111639982 -30631462 + MER20 DNA MER1_type 1 219 0 183 200 0 25 chr9 111640011 111640051 -30631393 - MIR SINE MIR -78 130 92 28 0 0 0 chr9 111640584 111640612 -30630832 + AT_rich Low_complexity Low_complexity 1 28 0 1660 110 103 15 chr9 111640674 111640962 -30630482 - AluSq SINE Alu 0 311 1 1003 166 33 0 chr9 111641853 111642034 -30629410 + MSTB1 LTR MaLR 1 187 -245 590 142 0 113 chr9 111643341 111643482 -30627962 + L1ME2 LINE L1 6037 6161 -3 7403 172 62 64 chr9 111643825 111643892 -30627552 - Tigger2 DNA MER2_type 0 2718 2652 1946 132 45 3 chr9 111643892 111644180 -30627264 - AluJb SINE Alu -12 300 1 7403 172 62 64 chr9 111644180 111646568 -30624876 - Tigger2 DNA MER2_type -66 2652 297 2707 35 0 3 chr9 111646688 111647000 -30624444 + AluY SINE Alu 1 311 0 786 139 0 0 chr9 111647903 111648018 -30623426 + FLAM_C SINE Alu 1 115 -18 384 323 43 72 chr9 111648295 111648710 -30622734 + HsTC2 DNA Tc2 484 886 -1012 1572 167 30 53 chr9 111649782 111650082 -30621362 + AluJo SINE Alu 6 298 -14 1717 143 20 17 chr9 111650155 111650448 -30620996 + AluJb SINE Alu 1 294 -18 909 226 134 21 chr9 111650891 111651174 -30620270 + LTR50 LTR ERVL 481 795 0 342 177 0 16 chr9 111652548 111652610 -30618834 - AluSp SINE Alu -120 183 123 242 28 0 28 chr9 111654212 111654248 -30617196 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 920 239 41 38 chr9 111654903 111655221 -30616223 - L1MC4 LINE L1 -4 8038 7720 215 294 108 20 chr9 111656204 111656306 -30615138 - MER5A DNA MER1_type -24 165 55 1596 171 27 20 chr9 111656352 111656644 -30614800 - AluJo SINE Alu 0 312 19 1232 224 37 0 chr9 111656644 111656939 -30614505 - L1M4 LINE L1 -817 5329 5024 1696 194 0 10 chr9 111656947 111657236 -30614208 - AluJo SINE Alu -26 286 1 229 143 61 0 chr9 111657239 111657288 -30614156 - L1M4 LINE L1 -1107 5039 4988 3919 228 67 22 chr9 111657370 111658569 -30612875 + L1ME1 LINE L1 1841 3181 -3034 1730 173 10 13 chr9 111658569 111658881 -30612563 + AluJo SINE Alu 1 311 -1 3919 228 67 22 chr9 111658881 111659362 -30612082 + L1ME1 LINE L1 3181 3639 -2576 3221 204 38 15 chr9 111659374 111660027 -30611417 - MER76 LTR ERV -16 672 5 2004 209 64 99 chr9 111660029 111660441 -30611003 + L1ME1 LINE L1 3643 4068 -2147 1229 201 33 0 chr9 111660441 111660655 -30610789 - MER58A DNA MER1_type 0 224 4 2004 209 64 99 chr9 111660655 111660697 -30610747 + L1ME1 LINE L1 4068 4110 -2105 2049 147 0 0 chr9 111660697 111660989 -30610455 + AluJb SINE Alu 1 292 -20 2004 209 64 99 chr9 111660989 111661362 -30610082 + L1ME1 LINE L1 4110 4442 -1773 924 231 11 0 chr9 111661362 111661548 -30609896 + MLT1F1 LTR MaLR 372 559 -8 2571 217 99 11 chr9 111661569 111662182 -30609262 + L1ME1 LINE L1 5555 6221 -14 198 279 101 25 chr9 111665355 111665434 -30606010 - L2 LINE L2 0 3313 3229 446 327 89 5 chr9 111665580 111665794 -30605650 - L2 LINE L2 -272 3041 2810 240 288 27 0 chr9 111665818 111665891 -30605553 - L2 LINE L2 -60 3253 3179 361 300 191 19 chr9 111666214 111666424 -30605020 + MIR SINE MIR 7 252 -10 214 296 0 25 chr9 111666958 111667039 -30604405 + MER5A DNA MER1_type 89 167 -22 375 245 53 26 chr9 111667093 111667238 -30604206 + MER5A DNA MER1_type 1 161 -28 21 0 0 0 chr9 111667964 111667985 -30603459 + AT_rich Low_complexity Low_complexity 1 21 0 821 266 6 6 chr9 111667992 111668169 -30603275 + MER8 DNA MER2_type 1 177 -62 235 250 111 28 chr9 111668215 111668287 -30603157 + MER8 DNA MER2_type 162 239 0 1352 150 79 8 chr9 111668763 111669016 -30602428 + AluJb SINE Alu 29 299 -13 245 379 41 12 chr9 111669302 111669471 -30601973 - L2 LINE L2 -439 2875 2702 21 0 0 0 chr9 111669503 111669524 -30601920 + AT_rich Low_complexity Low_complexity 1 21 0 2388 92 0 0 chr9 111669746 111670049 -30601395 + AluY SINE Alu 1 303 -8 1981 213 25 18 chr9 111671190 111671678 -30599766 + L1ME2 LINE L1 5654 6144 -20 328 279 42 50 chr9 111671715 111671955 -30599489 + L1MC4 LINE L1 7805 8042 0 2179 109 10 20 chr9 111672787 111673089 -30598355 + AluSx SINE Alu 3 301 -11 771 108 52 0 chr9 111674524 111674758 -30596686 + (CA)n Simple_repeat Simple_repeat 1 246 0 235 336 123 0 chr9 111674914 111675036 -30596408 + L3b LINE CR1 1357 1493 -90 368 239 227 25 chr9 111675881 111676044 -30595400 + L2 LINE L2 2864 3059 -254 185 317 17 75 chr9 111676174 111676294 -30595150 + L2 LINE L2 3192 3304 -9 321 299 141 11 chr9 111676381 111676558 -30594886 - MIR SINE MIR -57 205 6 2353 38 4 0 chr9 111676856 111677122 -30594322 - L1PA5 LINE L1 -8 6146 5880 252 0 0 0 chr9 111677595 111677623 -30593821 + (CA)n Simple_repeat Simple_repeat 2 29 0 829 191 7 7 chr9 111678016 111678163 -30593281 - AluJb SINE Alu -13 299 153 794 296 45 5 chr9 111678368 111678591 -30592853 + MIR SINE MIR 20 251 -11 1266 127 21 0 chr9 111679389 111679578 -30591866 - Tigger3(Golem) DNA MER2_type 0 3029 2837 21 82 0 0 chr9 111681252 111681301 -30590143 + AT_rich Low_complexity Low_complexity 1 49 0 364 359 46 0 chr9 111681363 111681494 -30589950 + MIR SINE MIR 2 138 -124 954 252 103 53 chr9 111682510 111683153 -30588291 + L2 LINE L2 2645 3292 -21 240 301 9 71 chr9 111683413 111683526 -30587918 + L2 LINE L2 2553 2658 -656 491 104 0 268 chr9 111683634 111683798 -30587646 + L1MB7 LINE L1 6022 6141 -37 185 285 161 39 chr9 111684283 111684413 -30587031 + MIR3 SINE MIR 1 146 -62 2400 82 0 19 chr9 111686522 111686838 -30584606 - AluY SINE Alu -1 310 1 22 56 0 0 chr9 111687222 111687258 -30584186 + AT_rich Low_complexity Low_complexity 1 36 0 1401 111 5 0 chr9 111687439 111687629 -30583815 - AluSg/x SINE Alu -25 285 95 343 284 154 56 chr9 111687684 111687846 -30583598 + MER5B DNA MER1_type 1 178 0 2263 68 10 0 chr9 111687898 111688192 -30583252 + AluY SINE Alu 1 297 -14 371 286 149 6 chr9 111688223 111688384 -30583060 + L1ME LINE L1 5641 5824 -297 2239 76 7 17 chr9 111688404 111688706 -30582738 - AluY SINE Alu -12 299 1 2078 158 57 5 chr9 111689027 111689413 -30582031 + MLT2C2 LTR ERVL 8 413 -51 984 182 0 157 chr9 111689482 111689762 -30581682 - MER8 DNA MER2_type 0 239 4 391 256 106 105 chr9 111690335 111690640 -30580804 + L1MC5 LINE L1 7665 8009 -33 21 0 0 0 chr9 111690858 111690879 -30580565 + AT_rich Low_complexity Low_complexity 1 21 0 2396 87 3 0 chr9 111690964 111691264 -30580180 + AluSp SINE Alu 1 301 -12 216 67 0 0 chr9 111691537 111691567 -30579877 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 429 279 44 82 chr9 111692042 111692225 -30579219 + MER91A DNA MER1_type 4 179 -17 219 300 0 0 chr9 111692830 111692880 -30578564 + L3 LINE CR1 1509 1558 -19 23 33 0 0 chr9 111692973 111693003 -30578441 + AT_rich Low_complexity Low_complexity 1 30 0 2190 136 0 0 chr9 111694059 111694360 -30577084 - AluSx SINE Alu -11 301 1 333 151 14 27 chr9 111694810 111694883 -30576561 - L1MB8 LINE L1 0 6178 6107 1450 167 7 17 chr9 111694927 111695215 -30576229 - L1MB8 LINE L1 -66 6112 5828 389 299 86 17 chr9 111695647 111695821 -30575623 - MIR SINE MIR -6 256 71 29 47 0 0 chr9 111695963 111696006 -30575438 + AT_rich Low_complexity Low_complexity 1 43 0 1895 158 0 16 chr9 111696866 111697170 -30574274 + AluJo SINE Alu 1 299 -13 209 286 0 20 chr9 111697471 111697520 -30573924 - MIR SINE MIR -132 76 29 534 292 65 0 chr9 111697961 111698129 -30573315 + MER58A DNA MER1_type 44 222 -2 296 331 165 18 chr9 111698318 111698711 -30572733 + L2 LINE L2 2084 2534 -780 993 153 0 0 chr9 111699477 111699627 -30571817 - AluJo SINE Alu -162 150 1 22 0 0 30 chr9 111701308 111701319 -30570125 + AT_rich Low_complexity Low_complexity 1 11 -21 4414 90 19 3 chr9 111701319 111701961 -30569483 + L1MA1 LINE L1 5651 6302 0 22 0 0 30 chr9 111701961 111701982 -30569462 + AT_rich Low_complexity Low_complexity 11 32 0 224 291 39 58 chr9 111702139 111702242 -30569202 - L2 LINE L2 -330 2983 2883 221 292 71 18 chr9 111702344 111702457 -30568987 - L2 LINE L2 -456 2858 2740 815 262 87 0 chr9 111702645 111702874 -30568570 + MIR SINE MIR 13 261 -1 183 42 0 0 chr9 111703906 111703930 -30567514 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 346 367 40 7 chr9 111704070 111704220 -30567224 - MER5B DNA MER1_type -22 156 2 2081 58 0 4 chr9 111704231 111704488 -30566956 + AluY SINE Alu 46 301 -10 2408 74 0 0 chr9 111706122 111706419 -30565025 - AluSq SINE Alu -16 297 1 190 254 68 0 chr9 111706950 111707009 -30564435 - L3 LINE CR1 -290 1287 1225 413 176 55 11 chr9 111708989 111709080 -30562364 + MER81 DNA DNA 1 95 -19 21 36 0 0 chr9 111709482 111709510 -30561934 + AT_rich Low_complexity Low_complexity 1 28 0 2101 118 3 20 chr9 111710659 111710963 -30560481 + AluSg SINE Alu 1 299 -11 1916 149 3 32 chr9 111711487 111711795 -30559649 + AluJo SINE Alu 4 302 -10 237 239 14 56 chr9 111712769 111712840 -30558604 + L2 LINE L2 3246 3313 0 235 250 18 18 chr9 111713729 111713841 -30557603 - L1ME4a LINE L1 -3 6118 6007 1021 241 30 21 chr9 111713844 111714080 -30557364 - MER8 DNA MER2_type 0 239 2 200 372 64 32 chr9 111718713 111718869 -30552575 + L2 LINE L2 3036 3196 -76 * 543 257 148 17 chr9 111718860 111718954 -30552490 + L2 LINE L2 2186 2266 -1048 1215 202 19 79 chr9 111718954 111719235 -30552209 + MER2 DNA MER2_type 1 257 -87 1975 145 3 44 chr9 111719235 111719553 -30551891 - AluJb SINE Alu -5 307 3 1215 202 19 79 chr9 111719553 111719637 -30551807 + MER2 DNA MER2_type 257 344 0 543 257 148 17 chr9 111719637 111719779 -30551665 + L2 LINE L2 2266 2453 -861 2461 74 0 0 chr9 111719799 111720096 -30551348 + AluSc SINE Alu 1 297 -12 920 281 126 21 chr9 111720117 111720547 -30550897 + L2 LINE L2 2834 3308 -5 2497 75 0 0 chr9 111720888 111721193 -30550251 - AluY SINE Alu -6 305 1 21 36 0 0 chr9 111722228 111722256 -30549188 + AT_rich Low_complexity Low_complexity 1 28 0 185 296 0 122 chr9 111722365 111722463 -30548981 + MIR SINE MIR 20 105 -103 231 178 0 123 chr9 111722622 111722695 -30548749 + MIR SINE MIR 23 86 -122 2237 118 0 16 chr9 111723206 111723342 -30548102 + AluSx SINE Alu 1 138 -174 2375 109 0 0 chr9 111723342 111723654 -30547790 + AluSx SINE Alu 1 312 0 2237 118 0 16 chr9 111723654 111723823 -30547621 + AluSx SINE Alu 138 301 -11 2158 69 0 21 chr9 111724785 111725094 -30546350 - AluY SINE Alu 0 304 2 406 314 239 43 chr9 111725170 111725776 -30545668 + L3 LINE CR1 67 791 -786 189 121 0 0 chr9 111727604 111727637 -30543807 + (GA)n Simple_repeat Simple_repeat 2 34 0 214 231 33 22 chr9 111727768 111727859 -30543585 + T-rich Low_complexity Low_complexity 5 96 0 2108 96 6 71 chr9 111728744 111729066 -30542378 - AluSx SINE Alu -11 301 1 25 90 0 0 chr9 111729628 111729695 -30541749 + AT_rich Low_complexity Low_complexity 1 67 0 318 109 234 0 chr9 111730371 111730435 -30541009 + MER116 DNA Mariner 2 80 0 648 134 38 218 chr9 111730559 111730897 -30540547 + MER33 DNA MER1_type 1 260 -2325 1848 132 20 23 chr9 111730897 111731200 -30540244 - AluJb SINE Alu -10 302 1 648 134 38 218 chr9 111731200 111731256 -30540188 + MER33 DNA MER1_type 260 324 0 1186 147 0 0 chr9 111731618 111731781 -30539663 + AluSx SINE Alu 3 165 -147 311 78 39 0 chr9 111731813 111731864 -30539580 + Alu SINE Alu 250 302 0 21 0 0 0 chr9 111731881 111731902 -30539542 + AT_rich Low_complexity Low_complexity 1 21 0 1220 99 0 47 chr9 111732511 111732683 -30538761 - AluSg/x SINE Alu -17 293 130 1377 158 55 69 chr9 111732762 111732858 -30538586 + AluJo SINE Alu 1 97 -215 2470 74 0 19 chr9 111732858 111733168 -30538276 + AluY SINE Alu 1 304 -7 1377 158 55 69 chr9 111733168 111733362 -30538082 + AluJo SINE Alu 97 287 -25 23 0 0 0 chr9 111733362 111733385 -30538059 + AT_rich Low_complexity Low_complexity 1 23 0 273 348 57 6 chr9 111733990 111734148 -30537296 + L2 LINE L2 2447 2612 -702 520 279 149 6 chr9 111735876 111736057 -30535387 + MIR SINE MIR 59 262 0 587 242 126 42 chr9 111736564 111736754 -30534690 - MIR SINE MIR -56 206 1 236 320 88 0 chr9 111737622 111737747 -30533697 - MIR3 SINE MIR -15 193 58 21 89 0 0 chr9 111738118 111738174 -30533270 + AT_rich Low_complexity Low_complexity 1 56 0 2044 113 11 3 chr9 111738623 111738941 -30532503 - AluSx SINE Alu 0 320 1 234 208 0 0 chr9 111739665 111739718 -30531726 + (TAG)n Simple_repeat Simple_repeat 3 55 0 326 323 28 102 chr9 111739721 111740006 -30531438 - MIR3 SINE MIR 0 262 2 995 245 92 20 chr9 111740100 111740485 -30530959 + MLT1J2 LTR MaLR 1 413 -33 523 269 65 40 chr9 111740896 111741097 -30530347 - L2 LINE L2 -4 3309 3104 672 246 257 19 chr9 111741195 111741676 -30529768 - L2 LINE L2 0 3313 2704 216 319 44 97 chr9 111741714 111741827 -30529617 - MER91A DNA MER1_type 0 196 90 246 192 55 0 chr9 111742651 111742724 -30528720 + (TAAA)n Simple_repeat Simple_repeat 3 79 0 2239 105 0 0 chr9 111742770 111743064 -30528380 + AluSg SINE Alu 1 294 -16 1534 183 3 63 chr9 111743452 111743752 -30527692 - AluJo SINE Alu -30 282 1 24 53 0 0 chr9 111744338 111744376 -30527068 + AT_rich Low_complexity Low_complexity 1 38 0 315 271 54 114 chr9 111744522 111744688 -30526756 - MIR3 SINE MIR -11 197 42 2278 119 28 19 chr9 111745180 111745541 -30525903 + THE1B LTR MaLR 1 364 0 522 288 113 25 chr9 111745678 111746157 -30525287 + LTR33 LTR ERVL 1 521 0 323 237 61 79 chr9 111747160 111747274 -30524170 - L2 LINE L2 -8 3264 3153 305 270 56 0 chr9 111747774 111747863 -30523581 - MIR3 SINE MIR -34 174 81 301 273 27 27 chr9 111747912 111748022 -30523422 - MIR SINE MIR -36 226 117 212 179 0 0 chr9 111748130 111748169 -30523275 + T-rich Low_complexity Low_complexity 1 39 0 1503 182 61 7 chr9 111748333 111748613 -30522831 + AluJo SINE Alu 1 295 -17 2091 112 0 0 chr9 111748696 111748973 -30522471 + AluSx SINE Alu 35 311 -1 568 231 141 0 chr9 111749479 111749635 -30521809 - MER58A DNA MER1_type 0 224 47 1550 224 52 21 chr9 111749778 111750255 -30521189 - L1ME1 LINE L1 0 6166 5675 2043 145 0 7 chr9 111750310 111750614 -30520830 - AluJb SINE Alu -10 302 1 21 0 0 0 chr9 111751044 111751065 -30520379 + AT_rich Low_complexity Low_complexity 1 21 0 434 315 70 60 chr9 111751204 111751518 -30519926 + L2 LINE L2 2996 3312 -1 182 328 85 108 chr9 111751520 111751779 -30519665 + L2 LINE L2 3020 3272 0 201 342 54 77 chr9 111753748 111754061 -30517383 + L2 LINE L2 2621 2926 -388 25 0 0 0 chr9 111754489 111754514 -30516930 + AT_rich Low_complexity Low_complexity 1 25 0 233 255 160 11 chr9 111754990 111755084 -30516360 + MIR3 SINE MIR 90 197 -11 211 329 27 14 chr9 111755164 111755237 -30516207 + MIR SINE MIR 9 82 -180 210 91 0 0 chr9 111755246 111755279 -30516165 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr9 111755317 111755338 -30516106 + AT_rich Low_complexity Low_complexity 1 21 0 2264 115 0 0 chr9 111755424 111755729 -30515715 + AluSq SINE Alu 1 305 -8 424 295 51 9 chr9 111755745 111755896 -30515548 + MIR3 SINE MIR 34 191 -17 755 220 126 23 chr9 111755947 111756161 -30515283 + MIR SINE MIR 27 262 0 21 0 0 0 chr9 111756165 111756186 -30515258 + AT_rich Low_complexity Low_complexity 1 21 0 2265 117 0 7 chr9 111756577 111756886 -30514558 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr9 111757111 111757132 -30514312 + AT_rich Low_complexity Low_complexity 1 21 0 942 211 24 5 chr9 111758953 111759161 -30512283 - MER58B DNA MER1_type 0 341 130 10967 22 1 0 chr9 111759808 111761859 -30509585 - L1PA3 LINE L1 0 6155 4104 1486 211 94 17 chr9 111761860 111761871 -30509573 + L2 LINE L2 2549 2558 -756 2139 126 7 0 chr9 111761871 111762165 -30509279 - AluSx SINE Alu -16 296 1 1486 211 94 17 chr9 111762165 111762514 -30508930 + L2 LINE L2 2558 2937 -377 520 296 6 31 chr9 111762483 111762645 -30508799 + L2 LINE L2 3146 3303 -10 * 218 302 0 0 chr9 111763118 111763171 -30508273 + GA-rich Low_complexity Low_complexity 2 54 0 2292 84 0 3 chr9 111763549 111763860 -30507584 + AluSx SINE Alu 1 310 0 633 216 164 14 chr9 111763876 111764089 -30507355 + MIR SINE MIR 12 256 -6 331 254 119 109 chr9 111766901 111767295 -30504149 + L1MEd LINE L1 121 518 -5601 2186 101 3 7 chr9 111767732 111768028 -30503416 + AluSx SINE Alu 4 298 -14 1638 199 95 46 chr9 111768433 111768950 -30502494 + MLT1F LTR MaLR 1 542 0 530 272 174 0 chr9 111769541 111769736 -30501708 - MIR SINE MIR 0 262 34 1763 138 17 27 chr9 111769747 111770043 -30501401 - AluJo SINE Alu -19 293 1 225 291 29 155 chr9 111771096 111771237 -30500207 + L2 LINE L2 2612 2703 -611 234 62 0 0 chr9 111771237 111771269 -30500175 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 225 291 29 155 chr9 111771269 111771405 -30500039 + L2 LINE L2 2703 2854 -460 1338 291 37 12 chr9 111771405 111771835 -30499609 + L2 LINE L2 2365 2805 -509 875 288 53 33 chr9 111771811 111771904 -30499540 + L2 LINE L2 2970 3060 -253 * 1189 178 14 14 chr9 111771904 111772123 -30499321 + MER20 DNA MER1_type 1 219 0 875 288 53 33 chr9 111772123 111772366 -30499078 + L2 LINE L2 3060 3313 0 220 333 140 0 chr9 111773913 111774006 -30497438 + MIR SINE MIR 37 142 -66 264 252 180 18 chr9 111774011 111774122 -30497322 - L2 LINE L2 -9 3304 3176 * 573 312 63 91 chr9 111774121 111774662 -30496782 - L2 LINE L2 0 3313 2783 2306 95 0 35 chr9 111774662 111774978 -30496466 + AluSg SINE Alu 1 305 -5 573 312 63 91 chr9 111774978 111775035 -30496409 - L2 LINE L2 -530 2783 2726 225 207 35 52 chr9 111775043 111775101 -30496343 - L2 LINE L2 -544 2770 2714 197 238 0 24 chr9 111775113 111775155 -30496289 - L2 LINE L2 -560 2754 2714 2279 213 57 24 chr9 111775156 111775705 -30495739 + MLT1F1 LTR MaLR 1 567 0 309 242 63 0 chr9 111775705 111775800 -30495644 + MLT1F1-int LTR MaLR 1 101 -1270 1793 163 99 0 chr9 111775860 111776192 -30495252 - MLT1A1 LTR MaLR 0 365 1 737 261 65 8 chr9 111776214 111776474 -30494970 + MLT1F1-int LTR MaLR 306 580 -791 2133 112 0 33 chr9 111776483 111776786 -30494658 + AluSp SINE Alu 2 294 -19 346 305 36 36 chr9 111776990 111777157 -30494287 + MLT1F1-int LTR MaLR 692 858 -513 1063 269 26 0 chr9 111777673 111777941 -30493503 + MLT1F1 LTR MaLR 4 278 -289 509 293 65 0 chr9 111777943 111778066 -30493378 - MIR SINE MIR -131 131 1 339 321 16 54 chr9 111778069 111778253 -30493191 - MIR SINE MIR -84 178 2 2191 111 0 0 chr9 111778287 111778598 -30492846 + AluSg SINE Alu 1 311 0 277 306 56 28 chr9 111778712 111778820 -30492624 - MIR SINE MIR -124 138 28 1880 139 29 64 chr9 111779129 111779504 -30491940 + MLT1A1 LTR MaLR 1 362 -3 402 176 176 51 chr9 111779825 111780001 -30491443 - L1ME4a LINE L1 -16 6105 5908 652 243 32 48 chr9 111780023 111780212 -30491232 - MIR SINE MIR 0 262 77 586 219 116 14 chr9 111780572 111780718 -30490726 + MIR SINE MIR 3 163 -99 2084 102 3 53 chr9 111780718 111781041 -30490403 + AluSx SINE Alu 1 307 -5 1426 258 88 33 chr9 111781732 111781930 -30489514 - L1ME3A LINE L1 -285 5884 5699 2200 100 40 3 chr9 111781930 111782229 -30489215 - AluSx SINE Alu -2 310 1 1426 258 88 33 chr9 111782229 111782656 -30488788 - L1ME3A LINE L1 -470 5699 5297 2093 128 3 28 chr9 111782656 111782975 -30488469 - AluJb SINE Alu -1 311 1 1426 258 88 33 chr9 111782975 111783622 -30487822 - L1ME3A LINE L1 -872 5297 4492 736 179 26 13 chr9 111783796 111783947 -30487497 - FRAM SINE Alu -2 174 22 890 289 68 14 chr9 111783985 111784414 -30487030 - L1ME3A LINE L1 -1793 4353 3902 266 283 0 0 chr9 111784807 111784860 -30486584 + L3 LINE CR1 463 515 -1062 837 248 62 21 chr9 111785423 111785665 -30485779 + MIR SINE MIR 6 257 -5 214 205 41 107 chr9 111785909 111786031 -30485413 + L3 LINE CR1 1189 1302 -275 378 282 153 16 chr9 111786043 111786167 -30485277 + L3 LINE CR1 1435 1575 -2 196 261 0 0 chr9 111788063 111788109 -30483335 + L2 LINE L2 3222 3267 -5 350 288 43 49 chr9 111789400 111789563 -30481881 + MIR SINE MIR 15 176 -86 360 238 143 0 chr9 111789957 111790062 -30481382 - MER103 DNA DNA -44 122 3 333 328 57 40 chr9 111790184 111790361 -30481083 + MIR3 SINE MIR 23 202 -6 189 0 0 0 chr9 111790438 111790459 -30480985 + (T)n Simple_repeat Simple_repeat 1 21 0 284 240 67 13 chr9 111792132 111792207 -30479237 + L2 LINE L2 3194 3272 0 1710 155 7 52 chr9 111792519 111792829 -30478615 - AluJb SINE Alu -16 296 1 235 285 169 29 chr9 111793041 111793166 -30478278 + MIR SINE MIR 16 157 -67 283 180 66 16 chr9 111793283 111793344 -30478100 - L2 LINE L2 -4 3268 3205 22 35 0 0 chr9 111793896 111793925 -30477519 + AT_rich Low_complexity Low_complexity 1 29 0 656 289 78 0 chr9 111794434 111794652 -30476792 + MLT1J LTR MaLR 45 279 -232 1073 160 0 17 chr9 111795272 111795475 -30475969 - AluJb SINE Alu 0 312 121 576 194 0 0 chr9 111795475 111795578 -30475866 + AluJb SINE Alu 176 278 -34 180 111 0 0 chr9 111795609 111795636 -30475808 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 369 0 0 0 chr9 111796247 111796288 -30475156 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 300 127 0 36 chr9 111796320 111796375 -30475069 - MER20 DNA MER1_type -70 149 97 2506 56 0 7 chr9 111797332 111797636 -30473808 + AluY SINE Alu 1 302 -9 495 334 110 36 chr9 111798169 111798854 -30472590 - L2 LINE L2 -8 3264 2526 811 130 9 0 chr9 111799034 111799149 -30472295 - AluJb SINE Alu -195 117 2 501 319 30 56 chr9 111800118 111800350 -30471094 - L2 LINE L2 -191 3081 2856 1705 250 45 42 chr9 111800364 111800440 -30471004 + HAL1 LINE L1 116 190 -2317 2219 183 36 10 chr9 111800440 111800855 -30470589 + MSTB LTR MaLR 1 426 0 1705 250 45 42 chr9 111800855 111801418 -30470026 + HAL1 LINE L1 190 757 -1750 1304 100 19 71 chr9 111801458 111801668 -30469776 - AluSg/x SINE Alu -20 290 92 62 0 0 0 chr9 111801791 111801853 -30469591 + AT_rich Low_complexity Low_complexity 1 62 0 2292 99 0 13 chr9 111802673 111802976 -30468468 + AluSq SINE Alu 1 299 -14 508 184 78 0 chr9 111802976 111803079 -30468365 - MER46A DNA MER2_type -125 111 1 1407 216 147 11 chr9 111803079 111803515 -30467929 + MLT1E1 LTR MaLR 138 632 -22 230 179 36 0 chr9 111803535 111803591 -30467853 + L1ME1 LINE L1 6109 6166 0 * 479 247 98 25 chr9 111803586 111803861 -30467583 + HAL1 LINE L1 1067 1361 -1146 1696 259 142 16 chr9 111803903 111804824 -30466620 + HAL1 LINE L1 1460 2496 -11 337 232 58 58 chr9 111805651 111805789 -30465655 + L1ME3 LINE L1 5569 5706 -464 1096 264 19 50 chr9 111805807 111806285 -30465159 + L1ME3 LINE L1 5692 6154 -8 314 272 94 84 chr9 111806452 111806868 -30464576 - L1MC4 LINE L1 0 8042 7623 2354 98 0 19 chr9 111806871 111807187 -30464257 - AluSx SINE Alu -2 310 1 2052 116 34 0 chr9 111807305 111807597 -30463847 - AluSx SINE Alu -10 302 1 1777 160 4 0 chr9 111808975 111809244 -30462200 - AluJb SINE Alu -42 270 1 21 0 0 0 chr9 111809251 111809272 -30462172 + AT_rich Low_complexity Low_complexity 1 21 0 2429 95 0 0 chr9 111809373 111809679 -30461765 + AluSx SINE Alu 1 306 -6 743 200 28 61 chr9 111810279 111810459 -30460985 + FRAM SINE Alu 1 166 -10 186 349 12 47 chr9 111811377 111811463 -30459981 + MIR SINE MIR 34 116 -92 239 234 16 47 chr9 111811794 111811858 -30459586 - L2 LINE L2 -3 3269 3208 354 209 15 119 chr9 111811861 111811892 -30459552 - L2 LINE L2 0 3313 3280 2385 110 90 22 chr9 111811892 111812293 -30459151 + MSTA LTR MaLR 1 428 0 354 209 15 119 chr9 111812293 111812395 -30459049 - L2 LINE L2 -33 3280 3194 247 341 30 23 chr9 111814193 111814325 -30457119 - L2 LINE L2 -1201 2113 1981 2617 187 26 14 chr9 111814837 111815105 -30456339 - L1ME1 LINE L1 -5 6161 5898 432 219 10 0 chr9 111815105 111815201 -30456243 - L1MB3 LINE L1 -7 6176 6080 2617 187 26 14 chr9 111815201 111815499 -30455945 - L1ME1 LINE L1 -268 5898 5588 252 270 40 14 chr9 111815669 111815743 -30455701 + MIR SINE MIR 185 260 -2 968 106 96 30 chr9 111815745 111815943 -30455501 + L1MA8 LINE L1 5771 5981 -310 958 130 7 0 chr9 111815952 111816098 -30455346 - FRAM SINE Alu -2 174 28 1159 120 103 16 chr9 111816100 111816342 -30455102 + L1MA8 LINE L1 6014 6276 -15 776 199 25 6 chr9 111816347 111816508 -30454936 + AluJb SINE Alu 1 164 -148 709 190 138 126 chr9 111816721 111816887 -30454557 - MLT1D LTR MaLR 0 505 343 634 152 0 0 chr9 111816887 111816986 -30454458 - HY3 scRNA scRNA -2 99 1 709 190 138 126 chr9 111816986 111817145 -30454299 - MLT1D LTR MaLR -162 343 176 482 202 62 0 chr9 111817154 111817283 -30454161 - L1MB7 LINE L1 -16 6168 6032 1147 121 0 0 chr9 111817338 111817495 -30453949 - AluJb SINE Alu -6 306 150 259 349 146 51 chr9 111817698 111818108 -30453336 - L3 LINE CR1 -1072 505 57 1435 116 32 49 chr9 111819158 111819261 -30452183 - L1MA5A LINE L1 -29 6268 6165 2157 118 7 0 chr9 111819261 111819558 -30451886 - AluSx SINE Alu -13 299 1 1435 116 32 49 chr9 111819558 111819738 -30451706 - L1MA5A LINE L1 -132 6165 5990 1800 168 7 7 chr9 111823715 111824012 -30447432 - AluJo SINE Alu -15 297 1 1901 138 0 0 chr9 111824043 111824296 -30447148 + AluSx SINE Alu 1 253 -59 1612 182 21 14 chr9 111824311 111824591 -30446853 - AluJo SINE Alu -30 282 1 2038 124 3 7 chr9 111825511 111825794 -30445650 + AluSq SINE Alu 5 286 -27 405 0 0 0 chr9 111825794 111825839 -30445605 + (CA)n Simple_repeat Simple_repeat 2 46 0 1549 201 59 3 chr9 111825881 111826204 -30445240 - MER7A DNA MER2_type -1 345 7 341 355 59 5 chr9 111826336 111826522 -30444922 - L3 LINE CR1 -861 716 521 339 261 0 75 chr9 111826750 111826884 -30444560 - MIR SINE MIR -80 182 59 29 0 0 0 chr9 111827297 111827326 -30444118 + AT_rich Low_complexity Low_complexity 1 29 0 1916 159 0 3 chr9 111827642 111827925 -30443519 + AluSx SINE Alu 1 282 -30 1543 167 0 48 chr9 111828547 111828817 -30442627 + AluJo SINE Alu 1 257 -55 331 343 138 43 chr9 111829209 111829419 -30442025 + MIR SINE MIR 1 230 -32 189 0 0 0 chr9 111829687 111829708 -30441736 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 277 154 163 57 chr9 111829891 111830014 -30441430 + HAL1 LINE L1 803 938 -1569 343 268 53 48 chr9 111830050 111830124 -30441320 + HAL1 LINE L1 1032 1104 -1403 2467 84 3 0 chr9 111830124 111830432 -30441012 - AluSp SINE Alu -4 309 1 343 268 53 48 chr9 111830432 111830566 -30440878 + HAL1 LINE L1 1104 1241 -1266 * 611 238 78 37 chr9 111830562 111830806 -30440638 + HAL1 LINE L1 2254 2507 0 1976 119 3 70 chr9 111830810 111831122 -30440322 + AluSx SINE Alu 1 291 -21 2328 101 0 0 chr9 111831969 111832265 -30439179 + AluSg SINE Alu 1 296 -14 186 43 0 0 chr9 111832420 111832443 -30439001 + (T)n Simple_repeat Simple_repeat 1 23 0 2356 81 0 13 chr9 111832504 111832802 -30438642 - AluY SINE Alu -17 294 1 815 228 7 0 chr9 111832948 111833097 -30438347 + AluJo SINE Alu 1 150 -162 1633 151 31 34 chr9 111833110 111833402 -30438042 - AluJo SINE Alu -19 293 3 404 232 11 11 chr9 111833410 111833505 -30437939 - MER2 DNA MER2_type -250 95 1 1356 161 0 22 chr9 111833983 111834213 -30437231 + AluJb SINE Alu 88 312 0 1067 209 40 37 chr9 111834280 111834601 -30436843 + MER33 DNA MER1_type 2 323 -1 1604 185 4 4 chr9 111835566 111835831 -30435613 + AluJb SINE Alu 35 299 -13 2244 106 0 7 chr9 111836071 111836363 -30435081 - AluSx SINE Alu -18 294 5 320 345 15 73 chr9 111836372 111836502 -30434942 - L1ME LINE L1 -386 5735 5626 1887 143 31 3 chr9 111836502 111836795 -30434649 - AluJb SINE Alu -11 301 1 320 345 15 73 chr9 111836795 111836925 -30434519 - L1ME LINE L1 -495 5626 5490 1870 163 3 3 chr9 111837186 111837487 -30433957 + AluJb SINE Alu 1 301 -11 2124 114 7 10 chr9 111837620 111837919 -30433525 - AluSg SINE Alu -12 298 1 324 323 71 8 chr9 111838432 111838559 -30432885 + MIR SINE MIR 19 153 -109 2059 122 13 26 chr9 111839273 111839584 -30431860 - AluSq SINE Alu -6 307 1 906 210 17 0 chr9 111839739 111839920 -30431524 + MER5A DNA MER1_type 5 188 -1 1969 143 10 3 chr9 111840670 111840977 -30430467 + AluSx SINE Alu 1 309 -3 21 89 0 0 chr9 111841175 111841231 -30430213 + AT_rich Low_complexity Low_complexity 1 56 0 2302 100 0 3 chr9 111841272 111841573 -30429871 + AluSx SINE Alu 1 300 -12 2357 77 0 10 chr9 111842584 111842884 -30428560 + AluY SINE Alu 1 297 -14 1584 137 34 19 chr9 111842893 111843156 -30428288 + AluSx SINE Alu 38 304 -8 1107 201 27 126 chr9 111843165 111843642 -30427802 + L1MD1 LINE L1 5794 6223 -19 1082 314 153 34 chr9 111844102 111845178 -30426266 + L2 LINE L2 1540 2743 -571 851 219 30 50 chr9 111845178 111845376 -30426068 - L1ME1 LINE L1 -104 6062 5871 2137 118 3 10 chr9 111845376 111845680 -30425764 - AluSx SINE Alu -10 302 1 851 219 30 50 chr9 111845680 111845782 -30425662 - L1ME1 LINE L1 -295 5871 5768 1989 150 17 0 chr9 111845822 111846115 -30425329 + AluJb SINE Alu 1 298 -14 918 224 13 35 chr9 111846389 111846567 -30424877 - MER58A DNA MER1_type -2196 224 51 3838 89 9 32 chr9 111846567 111847128 -30424316 + LTR14 LTR ERVK 1 548 0 918 224 13 35 chr9 111847128 111847177 -30424267 - MER58A DNA MER1_type -2369 51 2 776 209 0 0 chr9 111847221 111847350 -30424094 + FLAM_A SINE Alu 2 130 -3 420 220 106 43 chr9 111847449 111847590 -30423854 + MIR SINE MIR 63 212 -50 1967 147 3 13 chr9 111848340 111848646 -30422798 - AluSx SINE Alu 0 312 10 375 313 204 17 chr9 111849425 111849665 -30421779 - L2 LINE L2 -497 2817 2533 3314 257 70 59 chr9 111849666 111850609 -30420835 - L1MDb LINE L1 -2290 4116 3185 3438 33 9 5 chr9 111850609 111851035 -30420409 + L1PA4 LINE L1 5724 6151 -4 3314 257 70 59 chr9 111851035 111851192 -30420252 - L1MDb LINE L1 -3221 3185 3031 1644 189 0 14 chr9 111851192 111851489 -30419955 - AluJb SINE Alu -19 293 1 3314 257 70 59 chr9 111851489 111851649 -30419795 - L1MDb LINE L1 -3375 3031 2874 1861 174 0 7 chr9 111851649 111851948 -30419496 - AluJb SINE Alu -15 297 1 3314 257 70 59 chr9 111851948 111853428 -30418016 - L1MDb LINE L1 -3532 2874 1340 276 271 0 0 chr9 111853441 111853526 -30417918 + L1 LINE L1 5099 5183 -963 807 278 66 9 chr9 111853770 111853997 -30417447 - L2 LINE L2 -774 2540 2301 269 306 0 20 chr9 111853993 111854091 -30417353 + L3 LINE CR1 1480 1575 -2 * 288 330 48 10 chr9 111856959 111857062 -30414382 + L2 LINE L2 3201 3307 -6 1800 154 0 77 chr9 111858269 111858607 -30412837 + AluJb SINE Alu 1 312 0 551 154 36 18 chr9 111859089 111859199 -30412245 + FRAM SINE Alu 59 170 -6 907 194 13 13 chr9 111859612 111859767 -30411677 - FRAM SINE Alu -23 153 1 21 89 0 0 chr9 111859987 111860043 -30411401 + AT_rich Low_complexity Low_complexity 1 56 0 189 284 134 24 chr9 111860799 111860926 -30410518 + L2 LINE L2 2924 3064 -208 688 258 19 0 chr9 111860997 111861152 -30410292 - MIR SINE MIR -8 254 97 190 373 0 0 chr9 111861285 111861344 -30410100 + L2 LINE L2 3246 3304 -9 376 298 21 11 chr9 111861348 111861442 -30410002 + MIR3 SINE MIR 70 164 -44 2181 62 52 3 chr9 111863043 111863332 -30408112 + AluY SINE Alu 1 303 -8 1386 141 168 12 chr9 111863487 111863743 -30407701 + AluJb SINE Alu 1 296 -16 2157 107 3 3 chr9 111864474 111864773 -30406671 + AluSx SINE Alu 1 299 -13 2260 72 28 10 chr9 111864936 111865227 -30406217 + AluY SINE Alu 1 296 -15 459 275 22 36 chr9 111866612 111866750 -30404694 + L2 LINE L2 3176 3311 -2 208 193 18 18 chr9 111867661 111867718 -30403726 + A-rich Low_complexity Low_complexity 5 61 0 235 233 248 16 chr9 111869773 111869902 -30401542 - L2 LINE L2 -50 3263 3105 439 279 47 65 chr9 111869919 111870144 -30401300 - L2 LINE L2 -323 2949 2724 281 130 143 39 chr9 111870163 111870240 -30401204 - L1MD1 LINE L1 -15 6227 6143 419 178 0 44 chr9 111870245 111870335 -30401109 - L1MD2 LINE L1 -279 6080 5995 1856 97 0 0 chr9 111870689 111870927 -30400517 + AluSx SINE Alu 1 238 -74 447 157 14 0 chr9 111870949 111871019 -30400425 + AluSx SINE Alu 220 290 -19 239 322 38 66 chr9 111871728 111871911 -30399533 - L2 LINE L2 -337 2977 2800 789 310 39 20 chr9 111871930 111872131 -30399313 + MIR SINE MIR 2 211 -51 2126 120 7 7 chr9 111872131 111872431 -30399013 + AluSx SINE Alu 1 300 -12 789 310 39 20 chr9 111872431 111872484 -30398960 + MIR SINE MIR 211 261 -1 246 243 78 6 chr9 111874067 111874180 -30397264 + MIR SINE MIR 109 233 -29 1158 196 125 39 chr9 111874247 111874583 -30396861 + MLT1A1 LTR MaLR 1 365 0 1579 158 3 101 chr9 111874831 111875148 -30396296 - AluJo SINE Alu -26 286 1 336 265 71 95 chr9 111875153 111875364 -30396080 + MIR SINE MIR 47 252 -10 701 156 15 22 chr9 111875503 111875638 -30395806 + FRAM SINE Alu 42 175 -1 198 0 0 0 chr9 111876745 111876767 -30394677 + (TAAAA)n Simple_repeat Simple_repeat 5 26 0 26 50 0 0 chr9 111876822 111876862 -30394582 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr9 111876894 111876930 -30394514 + AT_rich Low_complexity Low_complexity 1 36 0 283 286 17 0 chr9 111876986 111877105 -30394339 + L1ME4a LINE L1 5797 5917 -204 263 247 35 0 chr9 111877166 111877251 -30394193 + L1ME4a LINE L1 6009 6096 -25 4276 176 50 29 chr9 111877571 111877914 -30393530 + L1MB5 LINE L1 4107 4441 -1733 4057 85 19 21 chr9 111877914 111878302 -30393142 + L1MA2 LINE L1 5685 6073 -231 2150 109 3 7 chr9 111878302 111878604 -30392840 + AluSx SINE Alu 5 305 -7 4057 85 19 21 chr9 111878604 111878836 -30392608 + L1MA2 LINE L1 6073 6304 0 4276 176 50 29 chr9 111878836 111880258 -30391186 + L1MB5 LINE L1 4441 6096 -78 2341 68 3 10 chr9 111880273 111880566 -30390878 - AluSg SINE Alu -19 291 1 863 178 7 0 chr9 111880591 111880737 -30390707 + FRAM SINE Alu 18 164 -12 44 0 0 0 chr9 111880737 111880781 -30390663 + AT_rich Low_complexity Low_complexity 1 44 0 2206 112 0 35 chr9 111881601 111881913 -30389531 + AluSx SINE Alu 1 301 -11 427 324 55 57 chr9 111882339 111882706 -30388738 - L3 LINE CR1 -156 1421 1056 186 43 0 0 chr9 111882916 111882939 -30388505 + (A)n Simple_repeat Simple_repeat 1 23 0 242 93 0 23 chr9 111883431 111883474 -30387970 + (GAAAA)n Simple_repeat Simple_repeat 5 46 0 423 262 100 25 chr9 111884085 111884364 -30387080 + L1ME4a LINE L1 5598 5897 -224 243 258 150 0 chr9 111884406 111884526 -30386918 + L1ME4a LINE L1 5978 6115 -6 215 254 45 15 chr9 111884634 111884701 -30386743 + L3 LINE CR1 37 105 -1472 964 219 69 9 chr9 111884721 111884954 -30386490 - MIR SINE MIR 0 262 16 636 290 225 46 chr9 111885097 111885776 -30385668 + L3 LINE CR1 612 1412 -165 2331 103 3 0 chr9 111886755 111887055 -30384389 + AluSq SINE Alu 1 301 -12 281 275 34 0 chr9 111887062 111887177 -30384267 + L1ME4a LINE L1 5829 5933 -188 2241 96 0 0 chr9 111887291 111887572 -30383872 + AluSg SINE Alu 1 281 -29 1931 91 57 4 chr9 111888307 111888592 -30382852 + AluSq SINE Alu 5 303 0 496 286 25 37 chr9 111888926 111889087 -30382357 - MIR3 SINE MIR -33 175 17 2296 88 20 10 chr9 111889560 111889865 -30381579 + AluSq SINE Alu 1 308 -5 2422 91 3 0 chr9 111890018 111890325 -30381119 - AluSx SINE Alu -4 308 1 211 278 72 10 chr9 111890510 111890607 -30380837 + MIR SINE MIR 158 260 -2 740 135 21 78 chr9 111890872 111891013 -30380431 - FLAM_C SINE Alu 0 133 1 2051 134 17 3 chr9 111891025 111891323 -30380121 - AluSx SINE Alu -10 302 1 2352 91 0 26 chr9 111891604 111891913 -30379531 - AluSq SINE Alu -12 301 1 187 135 108 0 chr9 111892493 111892530 -30378914 + MIR SINE MIR 81 121 -87 207 213 21 0 chr9 111893012 111893059 -30378385 + L3b LINE CR1 1533 1580 -3 337 109 62 0 chr9 111893385 111893449 -30377995 + MIR3 SINE MIR 125 192 -16 25 51 0 0 chr9 111894322 111894361 -30377083 + GC_rich Low_complexity Low_complexity 1 39 0 899 253 27 0 chr9 111894876 111895101 -30376343 - MIR SINE MIR -26 236 6 2384 133 145 90 chr9 111895760 111896224 -30375220 - LTR36 LTR ERV1 0 611 107 2056 121 24 0 chr9 111896224 111896513 -30374931 - AluSq SINE Alu -17 296 1 2384 133 145 90 chr9 111896513 111896627 -30374817 - LTR36 LTR ERV1 -504 107 1 2398 103 0 3 chr9 111897122 111897432 -30374012 - AluSx SINE Alu -3 309 1 266 282 161 23 chr9 111897955 111898129 -30373315 + L2 LINE L2 3075 3272 0 397 252 30 30 chr9 111898462 111898593 -30372851 + MLT1K LTR MaLR 456 586 -2 505 264 51 28 chr9 111898964 111899142 -30372302 + MIR SINE MIR 34 215 -47 2223 94 0 0 chr9 111899142 111899418 -30372026 + AluSx SINE Alu 1 276 -36 233 284 102 11 chr9 111899627 111899715 -30371729 + L2 LINE L2 2967 3062 -210 22 0 0 0 chr9 111899873 111899895 -30371549 + AT_rich Low_complexity Low_complexity 1 22 0 520 287 79 15 chr9 111899925 111900143 -30371301 + MIR SINE MIR 4 235 -27 354 275 44 0 chr9 111900293 111900384 -30371060 - MER117 DNA MER1_type 0 197 103 1803 168 0 10 chr9 111900385 111900677 -30370767 - AluSx SINE Alu -3 309 21 2269 103 7 3 chr9 111901440 111901731 -30369713 + AluSx SINE Alu 1 292 -20 25 31 0 0 chr9 111901745 111901777 -30369667 + AT_rich Low_complexity Low_complexity 1 32 0 1038 115 0 0 chr9 111901796 111901935 -30369509 - AluJo SINE Alu -173 139 1 310 285 175 5 chr9 111902052 111902252 -30369192 + L2 LINE L2 2623 2856 -458 1802 219 81 40 chr9 111902287 111902624 -30368820 + MLT1D LTR MaLR 12 376 -129 2139 109 0 3 chr9 111902624 111902935 -30368509 - AluSx SINE Alu 0 310 1 1802 219 81 40 chr9 111902935 111903067 -30368377 + MLT1D LTR MaLR 376 501 -4 1639 189 19 32 chr9 111903197 111903567 -30367877 - MLT1A1 LTR MaLR 0 365 1 823 183 0 0 chr9 111903847 111903978 -30367466 + FRAM SINE Alu 2 132 -44 260 27 27 0 chr9 111903982 111904019 -30367425 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 435 154 0 51 chr9 111906034 111906112 -30365332 - Tigger5 DNA MER2_type 0 2323 2250 399 241 0 0 chr9 111906151 111906230 -30365214 - Tigger5 DNA MER2_type -2244 79 1 253 0 54 0 chr9 111906449 111906486 -30364958 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2303 67 0 7 chr9 111906488 111906770 -30364674 - AluY SINE Alu -31 280 1 27 49 0 0 chr9 111906984 111907025 -30364419 + AT_rich Low_complexity Low_complexity 1 41 0 1219 180 166 10 chr9 111907134 111907429 -30364015 + MER58B DNA MER1_type 1 341 0 402 276 10 0 chr9 111908020 111908118 -30363326 + MIR3 SINE MIR 98 196 -12 589 160 0 0 chr9 111908129 111908235 -30363209 + MIR SINE MIR 117 222 -40 220 310 223 52 chr9 111908699 111909067 -30362377 - L2 LINE L2 -4 3268 2838 2258 115 0 3 chr9 111909942 111910246 -30361198 - AluSx SINE Alu -9 303 1 2168 120 0 10 chr9 111910443 111910744 -30360700 + AluSq SINE Alu 1 298 -15 2200 100 0 7 chr9 111911029 111911318 -30360126 - AluSx SINE Alu -25 287 1 202 274 35 53 chr9 111911628 111911741 -30359703 + MIR SINE MIR 109 219 -43 740 178 8 8 chr9 111913081 111913210 -30358234 + AluJb SINE Alu 156 284 -28 2344 107 0 0 chr9 111913414 111913724 -30357720 + AluSg SINE Alu 1 310 0 445 325 19 0 chr9 111913959 111914116 -30357328 - MIR SINE MIR -71 191 32 187 301 60 12 chr9 111914166 111914249 -30357195 + L3 LINE CR1 65 151 -1426 335 343 57 9 chr9 111914359 111914569 -30356875 + L3 LINE CR1 258 477 -1100 220 213 98 0 chr9 111914604 111914665 -30356779 + MER5A DNA MER1_type 9 75 -114 1885 147 0 7 chr9 111914666 111914945 -30356499 + AluJb SINE Alu 2 278 -34 198 191 0 0 chr9 111914945 111914992 -30356452 + G-rich Low_complexity Low_complexity 3 49 0 771 106 106 24 chr9 111915209 111915332 -30356112 - FLAM_C SINE Alu 0 133 1 480 266 150 34 chr9 111915353 111915560 -30355884 + MIR SINE MIR 5 235 -27 1166 227 77 73 chr9 111916221 111916740 -30354704 + L1MC4 LINE L1 7357 7877 -165 204 125 0 0 chr9 111916783 111916815 -30354629 + (TAG)n Simple_repeat Simple_repeat 2 33 0 447 151 129 0 chr9 111916860 111916953 -30354491 + L1MB4 LINE L1 6046 6150 -30 406 145 0 0 chr9 111916954 111917016 -30354428 + Alu SINE Alu 238 299 -3 1785 177 23 0 chr9 111917027 111917326 -30354118 + AluJb SINE Alu 1 306 -6 257 91 45 0 chr9 111917343 111917387 -30354057 + L1MB4 LINE L1 6135 6180 0 356 122 0 0 chr9 111917412 111917461 -30353983 + FRAM/FAM SINE Alu 22 70 -105 2044 131 13 13 chr9 111917532 111917837 -30353607 + AluSx SINE Alu 1 305 -7 766 145 103 0 chr9 111917839 111917984 -30353460 + L1MC1 LINE L1 6173 6332 -1 2265 79 31 0 chr9 111918012 111918304 -30353140 - AluSq SINE Alu -12 301 1 2071 121 28 0 chr9 111918871 111919160 -30352284 - AluSx SINE Alu -15 297 1 2130 82 0 4 chr9 111919171 111919438 -30352006 - AluSq SINE Alu -5 308 43 263 315 46 0 chr9 111919439 111919547 -30351897 + L2 LINE L2 2515 2627 -687 2732 167 49 78 chr9 111919861 111919915 -30351529 + MER21B LTR ERV1 265 319 -544 1710 143 16 55 chr9 111919915 111920223 -30351221 + AluSx SINE Alu 1 296 -16 2732 167 49 78 chr9 111920223 111920413 -30351031 + MER21B LTR ERV1 319 513 -350 2161 128 0 3 chr9 111920413 111920719 -30350725 + AluSq SINE Alu 5 309 -4 2732 167 49 78 chr9 111920719 111921089 -30350355 + MER21B LTR ERV1 513 862 -1 251 219 125 0 chr9 111921222 111921286 -30350158 + MLT1I LTR MaLR 280 351 -58 417 313 73 7 chr9 111921838 111921988 -30349456 - MIR3 SINE MIR -28 180 21 2262 110 13 0 chr9 111922461 111922762 -30348682 - AluSx SINE Alu -7 305 1 2087 135 7 0 chr9 111924703 111925007 -30346437 - AluSx SINE Alu -2 310 5 307 347 91 0 chr9 111925264 111925385 -30346059 + L2 LINE L2 3141 3272 0 3800 129 0 0 chr9 111925753 111926280 -30345164 + MER1A DNA MER1_type 1 527 0 2337 93 0 0 chr9 111926653 111926943 -30344501 - AluSg SINE Alu -20 290 1 2551 68 3 3 chr9 111927018 111927329 -30344115 + AluY SINE Alu 1 311 0 1524 234 102 82 chr9 111927560 111928255 -30343189 + MER21B LTR ERV1 6 714 -149 765 233 257 7 chr9 111928359 111928911 -30342533 + LTR50 LTR ERVL 1 523 0 1421 132 151 81 chr9 111929830 111929928 -30341516 + L1MB8 LINE L1 5797 5887 -291 2130 121 35 0 chr9 111929928 111930217 -30341227 + AluSx SINE Alu 1 299 -13 1421 132 151 81 chr9 111930217 111930475 -30340969 + L1MB8 LINE L1 5887 6178 0 404 256 122 40 chr9 111930662 111930891 -30340553 - L1 LINE L1 -2833 3313 3104 2347 72 0 10 chr9 111930891 111931183 -30340261 - AluSc SINE Alu -18 291 3 1460 177 64 7 chr9 111931186 111931468 -30339976 - AluJb SINE Alu -13 299 2 404 256 122 40 chr9 111931468 111931828 -30339616 - L1 LINE L1 -3043 3103 2663 1556 143 40 8 chr9 111931883 111932135 -30339309 - AluJo SINE Alu -12 300 41 780 301 75 15 chr9 111932418 111932807 -30338637 - L1M4 LINE L1 -2397 3749 3338 5038 149 43 5 chr9 111932824 111933684 -30337760 - L1MB7 LINE L1 -16 6168 5276 315 245 43 37 chr9 111933738 111933771 -30337673 - L1M4 LINE L1 -2875 3271 3240 1670 185 35 62 chr9 111933771 111933885 -30337559 + MLT2D LTR ERVL 4 119 -295 2093 113 38 0 chr9 111933885 111934177 -30337267 + AluSg SINE Alu 1 303 -7 1670 185 35 62 chr9 111934177 111934484 -30336960 + MLT2D LTR ERVL 119 414 0 315 245 43 37 chr9 111934484 111934638 -30336806 - L1M4 LINE L1 -2906 3240 3083 1438 137 176 4 chr9 111934908 111935163 -30336281 - AluJb SINE Alu -13 299 1 2183 86 31 0 chr9 111935288 111935580 -30335864 - AluSx SINE Alu -11 301 1 2182 137 0 0 chr9 111936530 111936830 -30334614 + AluSx SINE Alu 1 300 -12 607 305 16 5 chr9 111936948 111937135 -30334309 + MIR SINE MIR 65 253 -9 356 161 0 0 chr9 111937871 111937933 -30333511 - L2 LINE L2 -214 3058 2997 213 268 163 29 chr9 111938354 111938563 -30332881 + L2 LINE L2 1845 2081 -1233 2371 84 3 7 chr9 111938893 111939192 -30332252 - AluSg SINE Alu -12 298 1 935 242 132 38 chr9 111939691 111940084 -30331360 + MLT1J LTR MaLR 82 511 0 1376 295 59 11 chr9 111940085 111940546 -30330898 + MLT1J LTR MaLR 22 504 -7 574 290 56 39 chr9 111942647 111942878 -30328566 - MIR SINE MIR -19 243 9 28 29 0 0 chr9 111943509 111943544 -30327900 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr9 111944033 111944067 -30327377 + AT_rich Low_complexity Low_complexity 1 34 0 2730 124 24 0 chr9 111944537 111944948 -30326496 + MSTA LTR MaLR 8 428 0 183 282 181 13 chr9 111945128 111945277 -30326167 + MIR SINE MIR 86 259 -3 1646 208 0 26 chr9 111945478 111945786 -30325658 + AluJo SINE Alu 1 300 -12 1989 148 0 3 chr9 111946876 111947166 -30324278 + AluJb SINE Alu 1 289 -23 549 226 58 47 chr9 111947318 111947508 -30323936 - Charlie1 DNA MER1_type 0 2761 2570 13362 41 5 10 chr9 111947566 111949980 -30321464 - L1PA3 LINE L1 -4 6151 3741 2103 124 10 0 chr9 111950097 111950387 -30321057 - AluSx SINE Alu -19 293 1 244 234 131 28 chr9 111950448 111950555 -30320889 + L1ME4a LINE L1 5967 6084 -37 242 315 71 8 chr9 111950697 111950824 -30320620 + MIR3 SINE MIR 6 140 -68 235 337 0 0 chr9 111950842 111950934 -30320510 - L2 LINE L2 -1 3271 3180 1079 171 9 38 chr9 111950957 111951112 -30320332 + MER3 DNA MER1_type 1 150 -59 2203 98 0 29 chr9 111951112 111951418 -30320026 - AluSx SINE Alu -15 297 1 1079 171 9 38 chr9 111951418 111951472 -30319972 + MER3 DNA MER1_type 150 204 -5 2040 152 0 13 chr9 111952041 111952357 -30319087 + AluSx SINE Alu 1 312 0 2433 94 10 0 chr9 111952738 111953047 -30318397 + AluSx SINE Alu 1 312 0 739 305 50 21 chr9 111953235 111953663 -30317781 - LTR16A LTR ERVL -4 453 6 1398 147 0 43 chr9 111953716 111953948 -30317496 + AluJb SINE Alu 88 309 -3 221 292 45 11 chr9 111954083 111954172 -30317272 - L2 LINE L2 -1 3271 3180 309 278 37 80 chr9 111954241 111954403 -30317041 - MIR SINE MIR -17 245 91 408 301 64 56 chr9 111954475 111954817 -30316627 + MLT1J LTR MaLR 1 345 -166 2389 85 3 0 chr9 111955426 111955721 -30315723 + AluSp SINE Alu 1 296 -17 303 276 125 68 chr9 111955828 111955885 -30315559 - LTR16C LTR ERVL -1 490 438 1451 171 13 70 chr9 111955885 111956183 -30315261 + AluJo SINE Alu 2 282 -30 303 276 125 68 chr9 111956183 111956317 -30315127 - LTR16C LTR ERVL -53 438 288 568 229 110 0 chr9 111956336 111956454 -30314990 + FLAM_A SINE Alu 1 131 -2 256 281 171 43 chr9 111956707 111956871 -30314573 + L1ME LINE L1 570 754 -5880 876 122 0 0 chr9 111956959 111957074 -30314370 + FLAM_C SINE Alu 6 120 -23 21 0 0 0 chr9 111957075 111957096 -30314348 + AT_rich Low_complexity Low_complexity 1 21 0 396 273 25 0 chr9 111957103 111957224 -30314220 + L1ME LINE L1 1468 1591 -5043 295 245 17 3 chr9 111957307 111957423 -30314021 + L1ME LINE L1 1514 1627 -4915 1034 180 12 0 chr9 111957425 111957597 -30313847 + FAM SINE Alu 1 174 -1 389 289 40 46 chr9 111957716 111957889 -30313555 + MLT1I LTR MaLR 68 239 -170 299 164 0 82 chr9 111957978 111958051 -30313393 + MLT1J2 LTR MaLR 370 436 -14 207 263 25 50 chr9 111958136 111958216 -30313228 + L2 LINE L2 3191 3268 -4 195 250 18 18 chr9 111958299 111958355 -30313089 - MIR3 SINE MIR -139 69 14 223 209 58 35 chr9 111958644 111958730 -30312714 + L3 LINE CR1 786 873 -704 833 139 0 0 chr9 111958940 111959062 -30312382 + FLAM_C SINE Alu 5 126 -17 350 284 18 18 chr9 111959090 111959199 -30312245 - MIR SINE MIR -133 129 21 259 212 91 0 chr9 111959235 111959301 -30312143 - MLT1K LTR MaLR -13 575 504 1617 184 0 0 chr9 111959593 111959902 -30311542 - AluJb SINE Alu 0 309 1 407 325 98 0 chr9 111959931 111960094 -30311350 + L3 LINE CR1 1183 1361 -216 345 294 78 7 chr9 111960103 111960256 -30311188 - MIR SINE MIR -9 253 90 808 183 0 0 chr9 111960563 111960689 -30310755 + FLAM_A SINE Alu 4 129 -4 412 283 44 50 chr9 111960704 111960884 -30310560 + LTR33 LTR ERVL 3 181 -340 450 244 66 52 chr9 111960970 111961183 -30310261 + LTR33 LTR ERVL 304 519 -2 327 221 116 0 chr9 111961267 111961362 -30310082 - L1ME4a LINE L1 -70 6051 5946 477 197 112 72 chr9 111961399 111961559 -30309885 - L1ME4a LINE L1 -240 5881 5707 2379 68 0 0 chr9 111961559 111961863 -30309581 + AluSg SINE Alu 1 304 0 477 197 112 72 chr9 111961863 111961924 -30309520 - L1ME4a LINE L1 -414 5707 5650 627 223 83 13 chr9 111963045 111963202 -30308242 + MER5B DNA MER1_type 11 178 0 2134 149 0 0 chr9 111963273 111963582 -30307862 - AluSx SINE Alu -3 309 1 1932 123 4 7 chr9 111963937 111964213 -30307231 + AluSx SINE Alu 1 275 -37 778 132 0 8 chr9 111964233 111964354 -30307090 - FLAM_C SINE Alu -3 140 21 225 274 0 27 chr9 111964602 111964675 -30306769 + MIR SINE MIR 19 89 -119 1599 269 90 55 chr9 111964908 111965073 -30306371 + MER115 DNA AcHobo 1 159 -534 2390 96 0 3 chr9 111965073 111965374 -30306070 - AluSq SINE Alu -13 300 1 1599 269 90 55 chr9 111965374 111965878 -30305566 + MER115 DNA AcHobo 159 693 0 2126 133 3 0 chr9 111966536 111966836 -30304608 + AluSx SINE Alu 1 301 -11 1654 113 0 0 chr9 111966931 111967161 -30304283 - AluSg/x SINE Alu -10 300 71 1044 80 0 0 chr9 111967261 111967386 -30304058 - AluSq/x SINE Alu -187 125 1 1053 87 94 0 chr9 111967553 111967702 -30303742 + AluSg/x SINE Alu 137 299 -13 23 0 0 0 chr9 111968010 111968033 -30303411 + AT_rich Low_complexity Low_complexity 1 23 0 1753 178 10 7 chr9 111968122 111968425 -30303019 + AluJb SINE Alu 1 304 -8 1802 186 0 6 chr9 111969471 111969783 -30301661 + AluJo SINE Alu 1 310 -2 905 138 8 0 chr9 111969994 111970124 -30301320 + AluJ SINE Alu 3 133 -179 943 198 61 5 chr9 111970252 111970449 -30300995 + MER3 DNA MER1_type 2 209 0 2405 98 0 3 chr9 111970663 111970970 -30300474 + AluSq SINE Alu 1 306 -7 538 250 55 85 chr9 111971895 111972223 -30299221 - L1ME4a LINE L1 -452 5669 5352 354 204 20 71 chr9 111972513 111972611 -30298833 + MER103 DNA DNA 31 123 -43 25 0 0 0 chr9 111973121 111973146 -30298298 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr9 111973312 111973338 -30298106 + AT_rich Low_complexity Low_complexity 1 26 0 2291 97 7 0 chr9 111973345 111973634 -30297810 + AluSx SINE Alu 1 291 -21 823 164 34 7 chr9 111974377 111974523 -30296921 + AluJ SINE Alu 138 287 -25 1884 148 0 14 chr9 111974536 111974814 -30296630 + AluSx SINE Alu 3 276 -36 207 0 0 0 chr9 111974823 111974846 -30296598 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 227 291 38 25 chr9 111975054 111975133 -30296311 - MIR SINE MIR -26 236 157 27 49 0 0 chr9 111975208 111975249 -30296195 + AT_rich Low_complexity Low_complexity 1 41 0 281 361 136 0 chr9 111975283 111975452 -30295992 - MIR SINE MIR -64 198 7 2070 107 3 24 chr9 111975745 111976059 -30295385 - AluSq SINE Alu 0 308 1 1019 157 39 154 chr9 111976148 111976315 -30295129 + AluJo SINE Alu 1 124 -188 2225 99 0 0 chr9 111976315 111976649 -30294795 + AluSg SINE Alu 1 334 0 1019 157 39 154 chr9 111976649 111976766 -30294678 + AluJo SINE Alu 124 253 -59 2273 97 0 3 chr9 111976822 111977110 -30294334 + AluSx SINE Alu 5 291 -21 554 271 104 23 chr9 111977142 111977363 -30294081 - L1MC/D LINE L1 -1984 5824 5586 515 299 98 20 chr9 111977411 111977769 -30293675 - L1ME4a LINE L1 -82 6039 5654 230 275 75 58 chr9 111977836 111977889 -30293555 - L1ME4a LINE L1 -464 5657 5606 2037 120 17 3 chr9 111977889 111978181 -30293263 - AluSg SINE Alu -14 296 1 230 275 75 58 chr9 111978181 111978247 -30293197 - L1ME4a LINE L1 -515 5606 5536 267 281 92 7 chr9 111978305 111978458 -30292986 - L1ME4a LINE L1 -1 6120 5955 866 110 0 44 chr9 111979014 111979150 -30292294 + FLAM_C SINE Alu 1 130 -13 471 143 0 0 chr9 111980012 111980082 -30291362 + MLT1K LTR MaLR 519 588 0 1766 133 34 0 chr9 111980292 111980555 -30290889 - AluSx SINE Alu -2 310 39 186 71 0 0 chr9 111980555 111980583 -30290861 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2242 102 0 0 chr9 111980583 111980868 -30290576 - AluSx SINE Alu -27 285 1 900 131 0 0 chr9 111980877 111980999 -30290445 - FLAM_C SINE Alu -9 124 3 1838 145 4 0 chr9 111981011 111981287 -30290157 - AluJb SINE Alu -18 294 18 270 163 70 12 chr9 111981327 111981413 -30290031 + (TCTA)n Simple_repeat Simple_repeat 1 91 0 630 236 75 97 chr9 111981417 111981684 -30289760 - MIR SINE MIR 0 262 2 1589 189 36 4 chr9 111981707 111981988 -30289456 + AluJo SINE Alu 1 290 -22 301 284 19 82 chr9 111982005 111982054 -30289390 - L1ME4a LINE L1 -346 5775 5724 2288 113 0 3 chr9 111982054 111982355 -30289089 - AluSc SINE Alu -9 300 1 301 284 19 82 chr9 111982355 111982613 -30288831 - L1ME4a LINE L1 -397 5724 5619 2568 170 25 14 chr9 111982736 111983113 -30288331 - L1MB7 LINE L1 -20 6164 5779 1891 152 0 32 chr9 111983113 111983422 -30288022 - AluJb SINE Alu -13 299 1 2568 170 25 14 chr9 111983422 111983526 -30287918 - L1MB7 LINE L1 -405 5779 5678 418 257 57 69 chr9 111984599 111984677 -30286767 + LTR67 LTR ERVL 101 178 -379 637 136 36 114 chr9 111984677 111984817 -30286627 - FLAM_C SINE Alu -4 129 1 418 257 57 69 chr9 111984817 111984913 -30286531 + LTR67 LTR ERVL 178 273 -284 1464 191 70 28 chr9 111985869 111986226 -30285218 + MLT1A2 LTR MaLR 3 374 0 741 181 0 0 chr9 111986293 111986409 -30285035 + FLAM_C SINE Alu 2 117 -26 23 0 0 0 chr9 111986412 111986435 -30285009 + AT_rich Low_complexity Low_complexity 1 23 0 2229 117 0 0 chr9 111987144 111987442 -30284002 + AluSx SINE Alu 1 298 -14 1357 248 121 39 chr9 111987561 111987992 -30283452 + MLT1J LTR MaLR 8 473 -38 2546 156 39 0 chr9 111988308 111988724 -30282720 + MSTB1 LTR MaLR 1 432 0 641 174 0 9 chr9 111989144 111989253 -30282191 + AluJo/FLAM SINE Alu 3 110 -202 242 196 22 0 chr9 111989253 111989299 -30282145 + Alu SINE Alu 243 289 -11 772 251 89 16 chr9 111989321 111989651 -30281793 + MLT1J LTR MaLR 3 397 -114 2240 130 37 8 chr9 111989737 111990090 -30281354 + THE1B LTR MaLR 1 363 -1 257 234 27 90 chr9 111990698 111990809 -30280635 - MIR3 SINE MIR -14 194 91 1725 164 68 0 chr9 111991845 111991962 -30279482 + AluJo SINE Alu 1 109 -203 567 0 0 0 chr9 111991962 111992025 -30279419 + (CA)n Simple_repeat Simple_repeat 2 64 0 1725 164 68 0 chr9 111992025 111992188 -30279256 + AluJo SINE Alu 109 300 -12 229 271 108 68 chr9 111992270 111992477 -30278967 - MIR SINE MIR -33 229 18 477 0 0 0 chr9 111994781 111994834 -30276610 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 2124 139 0 0 chr9 111994835 111995122 -30276322 - AluSx SINE Alu -25 287 1 255 341 23 39 chr9 111995345 111995474 -30275970 + L2 LINE L2 2954 3080 -192 180 0 0 0 chr9 111995584 111995604 -30275840 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 197 228 53 35 chr9 111995612 111995669 -30275775 - MIR SINE MIR -116 146 89 272 200 69 92 chr9 111996163 111996293 -30275151 + MIR SINE MIR 1 127 -81 2357 185 4 36 chr9 111997491 111997994 -30273450 - L1MB3 LINE L1 0 6183 5697 297 350 14 21 chr9 111998709 111998849 -30272595 + MIR SINE MIR 9 147 -115 187 300 0 0 chr9 111999108 111999158 -30272286 - MIR SINE MIR -72 136 87 320 258 62 78 chr9 111999956 112000084 -30271360 + MIR SINE MIR 7 132 -130 548 273 28 34 chr9 112000138 112000314 -30271130 - MIR SINE MIR -30 232 58 279 349 102 30 chr9 112001492 112001954 -30269490 - L2 LINE L2 -557 2757 2263 443 306 94 12 chr9 112002298 112002468 -30268976 - MIR SINE MIR -67 195 12 196 296 0 42 chr9 112005182 112005200 -30266244 - MIR3 SINE MIR -52 156 139 1177 42 0 0 chr9 112005200 112005342 -30266102 + L1PA3 LINE L1 6014 6155 0 196 296 0 42 chr9 112005342 112005394 -30266050 - MIR3 SINE MIR -69 139 89 366 331 40 13 chr9 112005626 112005777 -30265667 + MIR SINE MIR 57 211 -51 25 31 0 0 chr9 112006470 112006502 -30264942 + AT_rich Low_complexity Low_complexity 1 32 0 183 297 27 27 chr9 112006873 112006947 -30264497 - MIR SINE MIR -58 204 131 385 289 145 7 chr9 112007088 112007240 -30264204 - L1ME4a LINE L1 -2 6119 5947 2216 127 0 0 chr9 112007333 112007632 -30263812 - AluSx SINE Alu -13 299 1 460 277 108 12 chr9 112007889 112008055 -30263389 - L1ME4a LINE L1 -222 5899 5718 2101 118 3 3 chr9 112008102 112008389 -30263055 - AluSq SINE Alu 0 313 27 1155 130 65 0 chr9 112009183 112009352 -30262092 - AluSg/x SINE Alu -13 299 120 2474 59 0 13 chr9 112009586 112009889 -30261555 + AluY SINE Alu 1 299 -12 1942 149 0 0 chr9 112010233 112010514 -30260930 + AluJb SINE Alu 1 281 -31 491 198 0 0 chr9 112010583 112010669 -30260775 - AluSg/x SINE Alu -10 299 214 198 0 0 0 chr9 112011080 112011102 -30260342 + (CATA)n Simple_repeat Simple_repeat 1 22 0 916 156 0 38 chr9 112011106 112011266 -30260178 - FRAM SINE Alu -25 151 1 400 225 45 0 chr9 112011467 112011556 -30259888 - MIR SINE MIR -109 153 61 935 146 42 24 chr9 112011572 112011737 -30259707 + AluJb SINE Alu 124 291 -21 4160 178 17 31 chr9 112011737 112012658 -30258786 - L1MB4 LINE L1 -7 6173 5266 2014 121 0 0 chr9 112012680 112012952 -30258492 - AluSg SINE Alu -30 280 9 1757 187 5 39 chr9 112012954 112013088 -30258356 - L1MB4 LINE L1 -861 5285 5148 2487 24 41 7 chr9 112013088 112013380 -30258064 + AluY SINE Alu 1 302 -9 1757 187 5 39 chr9 112013380 112013684 -30257760 - L1MB4 LINE L1 -998 5148 4862 666 267 99 0 chr9 112014265 112014456 -30256988 - MIR SINE MIR 0 262 53 360 0 0 0 chr9 112014555 112014595 -30256849 + (TG)n Simple_repeat Simple_repeat 1 40 0 2334 91 0 3 chr9 112014733 112015030 -30256414 - AluSg SINE Alu -14 296 1 504 234 21 99 chr9 112016093 112016285 -30255159 + MIR SINE MIR 37 213 -49 2061 120 3 41 chr9 112016639 112016955 -30254489 + AluSx SINE Alu 1 304 -8 210 163 93 0 chr9 112017098 112017141 -30254303 - MIR SINE MIR -96 166 120 640 182 0 74 chr9 112017182 112017330 -30254114 - FLAM_A SINE Alu 0 142 6 204 270 91 91 chr9 112017332 112017376 -30254068 + L2 LINE L2 1721 1764 -1550 2064 166 0 3 chr9 112017376 112017689 -30253755 - AluJo SINE Alu 0 312 1 204 270 91 91 chr9 112017689 112017951 -30253493 + L2 LINE L2 1763 2027 -1287 993 163 0 77 chr9 112018397 112018618 -30252826 - MER3 DNA MER1_type 0 209 6 254 221 52 13 chr9 112019038 112019115 -30252329 - L2 LINE L2 -1007 2307 2228 1312 270 60 35 chr9 112019375 112019860 -30251584 - MLT1K LTR MaLR -90 498 2 226 200 0 0 chr9 112019957 112020002 -30251442 + L2 LINE L2 3269 3313 0 1458 145 74 120 chr9 112020503 112020740 -30250704 - MLT1A2 LTR MaLR 0 374 128 755 118 9 0 chr9 112020740 112020850 -30250594 - HY1 scRNA scRNA -1 111 1 1458 145 74 120 chr9 112020850 112020861 -30250583 - MLT1A2 LTR MaLR -246 128 118 706 185 7 30 chr9 112020861 112020996 -30250448 - FLAM_C SINE Alu 0 133 2 1458 145 74 120 chr9 112020996 112021138 -30250306 - MLT1A2 LTR MaLR -256 118 1 219 235 196 10 chr9 112021455 112021557 -30249887 + MIR SINE MIR 113 233 -29 313 268 56 0 chr9 112021652 112021723 -30249721 + MIR SINE MIR 118 192 -70 419 221 0 47 chr9 112021729 112021815 -30249629 - L2 LINE L2 -3 3269 3188 1136 189 45 0 chr9 112021824 112022025 -30249419 + AluJb SINE Alu 85 294 -18 255 61 0 0 chr9 112022025 112022058 -30249386 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 1742 157 3 54 chr9 112022176 112022489 -30248955 - AluJb SINE Alu -15 297 1 1939 205 156 0 chr9 112022510 112022945 -30248499 - MLT1D LTR MaLR -2 503 1 310 318 42 47 chr9 112023171 112023363 -30248081 + MIR SINE MIR 49 239 -23 601 255 128 17 chr9 112023487 112023722 -30247722 + MIR SINE MIR 2 262 0 310 252 39 39 chr9 112024027 112024130 -30247314 + MIR3 SINE MIR 92 194 -14 238 163 0 185 chr9 112024124 112024216 -30247228 - MIR3 SINE MIR -10 198 124 * 285 29 0 0 chr9 112024492 112024526 -30246918 + (CGG)n Simple_repeat Simple_repeat 1 34 0 25 65 0 0 chr9 112024588 112024634 -30246810 + GC_rich Low_complexity Low_complexity 1 46 0 52 109 0 0 chr9 112024686 112024906 -30246538 + GC_rich Low_complexity Low_complexity 1 220 0 206 128 26 0 chr9 112025015 112025054 -30246390 + (CGG)n Simple_repeat Simple_repeat 2 41 0 35 0 0 0 chr9 112025138 112025173 -30246271 + GC_rich Low_complexity Low_complexity 1 35 0 48 85 0 0 chr9 112025460 112025578 -30245866 + GC_rich Low_complexity Low_complexity 1 118 0 279 0 0 0 chr9 112027675 112027706 -30243738 + (CA)n Simple_repeat Simple_repeat 1 31 0 231 246 115 0 chr9 112028364 112028425 -30243019 - L2 LINE L2 -17 3255 3188 1623 198 13 19 chr9 112028729 112029037 -30242407 - AluJo SINE Alu -6 306 1 592 223 68 44 chr9 112029279 112029485 -30241959 - L3 LINE CR1 -487 1090 880 233 274 55 14 chr9 112029705 112029778 -30241666 + MIR SINE MIR 78 153 -55 247 319 126 17 chr9 112030141 112030260 -30241184 - MIR3 SINE MIR -18 190 59 331 287 91 35 chr9 112030433 112030576 -30240868 - MER5A DNA MER1_type -12 177 27 257 289 186 33 chr9 112032572 112032762 -30238682 - L2 LINE L2 -1 3271 3111 761 164 0 22 chr9 112032762 112032896 -30238548 - FLAM_C SINE Alu 0 133 3 257 289 186 33 chr9 112032896 112033006 -30238438 - L2 LINE L2 -161 3111 2925 509 263 15 23 chr9 112033153 112033286 -30238158 - MIR SINE MIR -65 197 66 195 276 35 35 chr9 112034002 112034089 -30237355 - MIR3 SINE MIR -111 97 11 2407 136 5 23 chr9 112034624 112035057 -30236387 - L1MB3 LINE L1 0 6183 5759 461 267 183 30 chr9 112035625 112036056 -30235388 - L1ME3A LINE L1 -287 5883 5387 315 0 0 0 chr9 112036066 112036101 -30235343 + (TC)n Simple_repeat Simple_repeat 2 36 0 713 212 0 30 chr9 112036106 112036238 -30235206 - FLAM_C SINE Alu -14 129 2 412 228 69 56 chr9 112036603 112036768 -30234676 - L1MC5 LINE L1 -36 7925 7755 2069 126 14 3 chr9 112036768 112037061 -30234383 - AluSx SINE Alu -16 296 1 412 228 69 56 chr9 112037061 112037128 -30234316 - L1MC5 LINE L1 -206 7755 7690 690 187 0 49 chr9 112037140 112037263 -30234181 + FLAM_A SINE Alu 8 124 -18 292 277 52 19 chr9 112037328 112037483 -30233961 - L1MC5 LINE L1 -408 7553 7394 182 287 0 79 chr9 112037806 112037907 -30233537 - L3 LINE CR1 -26 1551 1459 566 249 5 83 chr9 112039081 112039212 -30232232 + MER5B DNA MER1_type 1 141 -37 312 48 0 0 chr9 112039212 112039254 -30232190 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 2098 81 7 7 chr9 112039255 112039527 -30231917 - AluSq SINE Alu -41 272 1 566 249 5 83 chr9 112039527 112039586 -30231858 + MER5B DNA MER1_type 140 178 0 2254 118 0 10 chr9 112039902 112040216 -30231228 - AluSx SINE Alu -1 311 1 2199 115 3 0 chr9 112040216 112040520 -30230924 - AluSx SINE Alu -7 305 1 1392 202 77 0 chr9 112040813 112041110 -30230334 - L1MB5 LINE L1 0 6174 5855 381 273 77 28 chr9 112041124 112041267 -30230177 - MIR SINE MIR -41 221 72 732 291 102 0 chr9 112041647 112041843 -30229601 - MIR SINE MIR -21 241 26 23 0 0 0 chr9 112041984 112042007 -30229437 + AT_rich Low_complexity Low_complexity 1 23 0 741 157 0 16 chr9 112042052 112042173 -30229271 + FLAM_C SINE Alu 2 120 -23 231 36 0 0 chr9 112042173 112042201 -30229243 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1707 160 0 24 chr9 112042204 112042497 -30228947 + AluJb SINE Alu 1 286 -26 230 225 124 69 chr9 112042531 112042749 -30228695 - L1ME4a LINE L1 -14 6107 5878 1018 187 0 0 chr9 112042756 112042922 -30228522 - FRAM SINE Alu 0 166 1 1611 108 12 39 chr9 112043311 112043570 -30227874 + MLT1B LTR MaLR 1 252 -138 742 193 0 21 chr9 112043934 112044079 -30227365 - FRAM SINE Alu -10 166 25 589 234 73 46 chr9 112044205 112044466 -30226978 + L1ME2 LINE L1 5865 6132 -32 251 197 113 14 chr9 112044560 112044631 -30226813 + L1MC5 LINE L1 7832 7909 -52 1882 155 0 13 chr9 112045037 112045353 -30226091 - AluSx SINE Alu 0 312 1 700 258 66 48 chr9 112045991 112046262 -30225182 + L1ME3A LINE L1 5894 6169 -1 1541 169 0 40 chr9 112046281 112046582 -30224862 + AluJo SINE Alu 13 301 -11 292 313 25 0 chr9 112046662 112046742 -30224702 + Charlie8 DNA MER1_type 150 231 -2186 2296 91 0 0 chr9 112047245 112047543 -30223901 + AluSg SINE Alu 1 298 -12 395 329 61 6 chr9 112048319 112048483 -30222961 - MIR SINE MIR -70 192 20 2008 121 9 123 chr9 112048489 112048927 -30222517 - MLT1B LTR MaLR -2 388 1 1408 174 63 14 chr9 112048966 112049253 -30222191 - AluJo SINE Alu -11 301 1 219 308 11 55 chr9 112049393 112049484 -30221960 - MIR SINE MIR -156 106 20 256 317 154 24 chr9 112050221 112050344 -30221100 + MIR3 SINE MIR 30 168 -40 288 277 55 59 chr9 112051068 112051149 -30220295 - L1MC5 LINE L1 -176 7785 7705 315 0 0 0 chr9 112051149 112051184 -30220260 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 277 55 59 chr9 112051184 112051224 -30220220 - L1MC5 LINE L1 -256 7705 7666 1441 164 24 50 chr9 112051224 112051522 -30219922 - AluJo SINE Alu -22 290 1 2265 66 7 10 chr9 112051531 112051832 -30219612 - AluY SINE Alu -11 300 1 288 277 55 59 chr9 112051832 112052006 -30219438 - L1MC5 LINE L1 -303 7658 7480 198 0 0 0 chr9 112052136 112052158 -30219286 + (T)n Simple_repeat Simple_repeat 1 22 0 2097 121 0 3 chr9 112052175 112052480 -30218964 + AluSq SINE Alu 3 306 -7 1806 228 102 18 chr9 112052663 112053173 -30218271 - MLT1H1 LTR MaLR -2 553 1 183 273 156 0 chr9 112054470 112054547 -30216897 + L2 LINE L2 3176 3264 -8 289 308 112 5 chr9 112054626 112054773 -30216671 + MIR3 SINE MIR 3 160 -62 317 109 18 0 chr9 112055073 112055128 -30216316 + (TG)n Simple_repeat Simple_repeat 2 57 0 377 339 132 29 chr9 112055268 112055548 -30215896 + L3 LINE CR1 209 517 -1060 199 206 29 44 chr9 112055678 112055746 -30215698 - MIR SINE MIR -168 94 28 543 323 65 32 chr9 112055872 112056182 -30215262 + L3 LINE CR1 677 996 -581 187 320 94 67 chr9 112056508 112056851 -30214593 - L2 LINE L2 -298 2974 2642 1210 235 52 55 chr9 112056851 112056931 -30214513 - MLT1A1 LTR MaLR 0 365 286 1564 189 13 16 chr9 112056931 112057104 -30214340 - AluJo SINE Alu -1 311 138 2488 60 0 10 chr9 112057104 112057418 -30214026 - AluY SINE Alu 0 311 1 1564 189 13 16 chr9 112057418 112057556 -30213888 - AluJo SINE Alu -174 138 1 1210 235 52 55 chr9 112057556 112057841 -30213603 - MLT1A1 LTR MaLR -79 286 1 187 320 94 67 chr9 112057841 112057956 -30213488 - L2 LINE L2 -630 2642 2506 1394 177 127 0 chr9 112057956 112058216 -30213228 + AluJb SINE Alu 2 294 -8 187 320 94 67 chr9 112058216 112058275 -30213169 - L2 LINE L2 -766 2506 2450 229 378 0 0 chr9 112059186 112059260 -30212184 + L2 LINE L2 3240 3313 0 714 82 0 0 chr9 112059609 112059707 -30211737 + (TCCA)n Simple_repeat Simple_repeat 1 98 0 273 226 23 187 chr9 112059721 112060031 -30211413 - L2 LINE L2 -7 3265 3007 258 247 118 32 chr9 112060821 112060914 -30210530 - MIR3 SINE MIR -104 104 4 1688 158 17 0 chr9 112061149 112061440 -30210004 + AluJo SINE Alu 1 296 -16 1713 161 109 3 chr9 112061487 112061753 -30209691 + MER47A DNA MER2_type 2 311 -2012 1476 167 53 43 chr9 112061753 112062053 -30209391 - AluJo SINE Alu -9 303 1 1713 161 109 3 chr9 112062053 112062116 -30209328 + MER47A DNA MER2_type 311 366 0 399 257 133 60 chr9 112062117 112062335 -30209109 - L1ME4a LINE L1 -114 6007 5774 325 188 7 130 chr9 112062785 112062876 -30208568 - L1MC5 LINE L1 -436 7525 7455 2101 76 31 3 chr9 112062876 112063164 -30208280 + AluSq SINE Alu 1 296 -17 325 188 7 130 chr9 112063164 112063210 -30208234 - L1MC5 LINE L1 -506 7455 7405 785 180 20 55 chr9 112063236 112063436 -30208008 - L1MC5 LINE L1 -678 7283 7091 * 4249 171 69 31 chr9 112063433 112064112 -30207332 - L1MB8 LINE L1 -1 6177 5434 1671 114 70 15 chr9 112064112 112064438 -30207006 - AluSx SINE Alu 0 312 1 4249 171 69 31 chr9 112064438 112064922 -30206522 - L1MB8 LINE L1 -744 5434 4970 397 199 114 72 chr9 112064923 112065089 -30206355 - L1MC5 LINE L1 -859 7102 6930 204 339 128 9 chr9 112065265 112065374 -30206070 - MIR SINE MIR -63 145 24 219 346 137 33 chr9 112065385 112065538 -30205906 + MIR SINE MIR 4 172 -90 1771 142 0 63 chr9 112066342 112066674 -30204770 + AluJb SINE Alu 1 311 -1 383 243 52 42 chr9 112067033 112067263 -30204181 - L2 LINE L2 -4 3309 3008 465 333 48 6 chr9 112068769 112068934 -30202510 + MIR3 SINE MIR 30 201 -7 214 273 114 53 chr9 112069448 112069580 -30201864 + L2 LINE L2 2921 3060 -212 441 0 0 0 chr9 112069655 112069704 -30201740 + (TG)n Simple_repeat Simple_repeat 2 50 0 370 274 96 55 chr9 112069722 112069868 -30201576 - L1MC4 LINE L1 -1140 6702 6494 255 307 118 31 chr9 112069978 112070105 -30201339 - MIR3 SINE MIR -65 143 6 * 301 263 72 53 chr9 112070037 112070189 -30201255 + MIR SINE MIR 43 197 -65 407 302 107 18 chr9 112070942 112071167 -30200277 - MIR SINE MIR -14 248 4 241 315 0 33 chr9 112072172 112072264 -30199180 - MIR SINE MIR -84 124 36 2233 104 0 0 chr9 112072318 112072617 -30198827 + AluSx SINE Alu 6 304 -8 187 235 15 88 chr9 112072879 112072947 -30198497 + MIR SINE MIR 21 83 -179 1870 158 0 0 chr9 112073104 112073389 -30198055 - AluSx SINE Alu -27 285 1 1568 174 11 21 chr9 112073403 112073685 -30197759 - AluJo SINE Alu -33 279 1 352 237 193 44 chr9 112074908 112075043 -30196401 - MER5B DNA MER1_type -21 157 3 22 0 0 0 chr9 112075575 112075597 -30195847 + AT_rich Low_complexity Low_complexity 1 22 0 363 241 115 17 chr9 112075616 112075801 -30195643 - L1MC4 LINE L1 -361 5805 5686 25 0 0 0 chr9 112076219 112076244 -30195200 + AT_rich Low_complexity Low_complexity 1 25 0 247 339 46 9 chr9 112076244 112076353 -30195091 - L2 LINE L2 0 3272 3160 2572 23 3 0 chr9 112076943 112077243 -30194201 - AluY SINE Alu -10 301 1 218 295 39 0 chr9 112077786 112077864 -30193580 - MIR3 SINE MIR -4 204 124 2054 138 0 3 chr9 112078862 112079174 -30192270 - AluSx SINE Alu -1 311 1 1318 129 0 19 chr9 112079474 112079684 -30191760 - AluJb SINE Alu -20 292 87 290 342 0 62 chr9 112079959 112080120 -30191324 - MER5B DNA MER1_type -3 175 25 210 37 0 0 chr9 112080288 112080315 -30191129 + (TG)n Simple_repeat Simple_repeat 1 27 0 276 77 0 0 chr9 112081794 112081833 -30189611 + (TC)n Simple_repeat Simple_repeat 1 39 0 289 257 129 10 chr9 112081962 112082063 -30189381 + MIR SINE MIR 32 144 -118 28 29 0 0 chr9 112082416 112082451 -30188993 + AT_rich Low_complexity Low_complexity 1 35 0 375 295 116 0 chr9 112082860 112082972 -30188472 - L2 LINE L2 -9 3263 3139 205 366 38 11 chr9 112083194 112083377 -30188067 - L2 LINE L2 -550 2764 2577 285 51 0 0 chr9 112083380 112083419 -30188025 + (CA)n Simple_repeat Simple_repeat 1 39 0 542 145 0 0 chr9 112084361 112084444 -30187000 - AluJb SINE Alu -227 85 3 2304 99 0 0 chr9 112085145 112085449 -30185995 + AluSx SINE Alu 1 304 -8 1754 143 30 27 chr9 112085490 112085791 -30185653 + AluJb SINE Alu 1 302 -10 420 296 0 0 chr9 112086194 112086292 -30185152 - MIR SINE MIR -115 147 50 865 237 11 0 chr9 112086403 112086589 -30184855 + MER5A DNA MER1_type 1 188 -1 335 299 0 0 chr9 112086654 112086751 -30184693 - MER5A DNA MER1_type -80 109 13 262 273 0 0 chr9 112087038 112087104 -30184340 + CT-rich Low_complexity Low_complexity 4 69 0 1829 147 7 3 chr9 112087855 112088147 -30183297 - AluJb SINE Alu -19 293 1 342 275 55 75 chr9 112088811 112088891 -30182553 - L1ME4a LINE L1 -146 5975 5895 2006 117 3 23 chr9 112088891 112089199 -30182245 - AluSq SINE Alu -11 302 1 342 275 55 75 chr9 112089199 112089318 -30182126 - L1ME4a LINE L1 -226 5895 5780 926 202 49 20 chr9 112090574 112090777 -30180667 - MER3 DNA MER1_type 0 209 1 534 242 130 19 chr9 112090789 112090950 -30180494 - MIR SINE MIR -82 180 2 205 208 0 57 chr9 112093580 112093633 -30177811 + L3 LINE CR1 1360 1409 -168 240 265 145 8 chr9 112094049 112094166 -30177278 + L2 LINE L2 3136 3268 -4 984 243 14 9 chr9 112094854 112095076 -30176368 - MER58A DNA MER1_type 0 224 2 391 216 60 52 chr9 112095099 112095233 -30176211 + MER5B DNA MER1_type 15 149 -29 304 288 57 45 chr9 112095539 112095716 -30175728 + MIR3 SINE MIR 14 192 -16 231 36 0 0 chr9 112096759 112096787 -30174657 + (TA)n Simple_repeat Simple_repeat 2 29 0 2516 61 0 0 chr9 112096787 112097082 -30174362 - AluY SINE Alu -16 295 1 837 161 8 0 chr9 112097116 112097246 -30174198 + AluJo SINE Alu 2 132 -170 439 274 63 23 chr9 112097313 112097529 -30173915 + MIR SINE MIR 10 224 -38 182 105 26 0 chr9 112098030 112098068 -30173376 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr9 112098141 112098169 -30173275 + AT_rich Low_complexity Low_complexity 1 28 0 406 282 42 0 chr9 112098496 112098638 -30172806 - MER103 DNA DNA -7 159 12 22 0 0 0 chr9 112098664 112098686 -30172758 + AT_rich Low_complexity Low_complexity 1 22 0 803 193 0 50 chr9 112098699 112098860 -30172584 + AluJo SINE Alu 141 293 -9 763 158 0 0 chr9 112099404 112099518 -30171926 + FLAM_C SINE Alu 5 118 -15 1608 123 0 0 chr9 112099529 112099740 -30171704 - AluSx SINE Alu -101 211 1 311 288 193 0 chr9 112100227 112100402 -30171042 - MER20B DNA MER1_type -6 213 4 1202 104 58 0 chr9 112101250 112101423 -30170021 + AluSg/x SINE Alu 128 310 0 265 146 22 45 chr9 112101439 112101528 -30169916 + CT-rich Low_complexity Low_complexity 1 87 0 224 0 0 122 chr9 112102606 112102647 -30168797 + (T)n Simple_repeat Simple_repeat 1 36 0 839 230 95 0 chr9 112102710 112102910 -30168534 - MER58A DNA MER1_type -1 223 5 201 39 0 0 chr9 112102986 112103012 -30168432 + (T)n Simple_repeat Simple_repeat 1 26 0 561 179 34 0 chr9 112103528 112103645 -30167799 + MER5A DNA MER1_type 32 152 -37 540 204 26 0 chr9 112104601 112104714 -30166730 + MIR3 SINE MIR 84 199 -9 425 246 34 77 chr9 112105965 112106172 -30165272 + LTR67 LTR ERVL 353 550 -7 185 272 12 25 chr9 112106186 112106267 -30165177 + L2 LINE L2 1900 1979 -1335 288 320 128 48 chr9 112106279 112107366 -30164078 + L2 LINE L2 2092 3272 0 384 324 62 17 chr9 112109909 112110088 -30161356 + MIR SINE MIR 51 237 -25 2247 121 0 7 chr9 112110162 112110469 -30160975 + AluSx SINE Alu 1 305 -7 1644 167 33 10 chr9 112110972 112111277 -30160167 - AluJo SINE Alu 0 312 1 566 254 90 79 chr9 112111423 112111879 -30159565 - L1MC/D LINE L1 -2009 5799 5339 2265 116 0 3 chr9 112112028 112112330 -30159114 + AluSx SINE Alu 1 301 -11 2162 129 7 0 chr9 112113568 112113863 -30157581 + AluSx SINE Alu 1 297 -15 1875 141 14 14 chr9 112114685 112114976 -30156468 - AluSx SINE Alu -13 299 9 671 255 87 15 chr9 112115544 112115740 -30155704 + MIR SINE MIR 2 211 -51 620 88 0 0 chr9 112116782 112116873 -30154571 - L1MA1 LINE L1 -2 6300 6210 366 353 163 7 chr9 112117339 112117628 -30153816 + L3 LINE CR1 29 362 -1215 298 264 205 56 chr9 112117631 112117980 -30153464 + L1M4 LINE L1 3952 4247 -1899 2398 83 0 0 chr9 112117980 112118269 -30153175 + AluSc SINE Alu 1 289 -20 298 264 205 56 chr9 112118269 112118528 -30152916 + L1M4 LINE L1 4247 4651 -1495 1680 178 7 7 chr9 112118722 112119015 -30152429 + AluJo SINE Alu 1 293 -19 448 160 43 4 chr9 112119015 112119252 -30152192 + (TA)n Simple_repeat Simple_repeat 1 246 0 1501 244 111 11 chr9 112119279 112119747 -30151697 - LTR33A LTR ERVL 0 523 9 260 265 37 52 chr9 112119988 112120124 -30151320 + L2 LINE L2 2919 3052 -220 189 286 95 57 chr9 112120172 112120189 -30151255 + L2 LINE L2 3157 3172 -100 2014 145 68 31 chr9 112120189 112120540 -30150904 + THE1B LTR MaLR 1 364 0 189 286 95 57 chr9 112120540 112120627 -30150817 + L2 LINE L2 3172 3265 -7 243 330 60 70 chr9 112120648 112120848 -30150596 - L2 LINE L2 -5 3267 3070 252 246 71 48 chr9 112120911 112121037 -30150407 + MIR3 SINE MIR 29 157 -51 282 202 0 14 chr9 112121043 112121151 -30150293 - MER5B DNA MER1_type 0 178 32 3385 170 8 20 chr9 112121178 112121790 -30149654 - L1MB7 LINE L1 -59 6125 5521 2110 127 0 0 chr9 112121796 112122123 -30149321 - AluSx SINE Alu 0 327 1 186 234 43 0 chr9 112122166 112122213 -30149231 + L3b LINE CR1 1531 1579 -4 1601 176 27 10 chr9 112122407 112122702 -30148742 - AluJb SINE Alu -12 300 1 211 97 0 0 chr9 112123073 112123104 -30148340 + L2 LINE L2 3210 3240 -32 758 253 6 0 chr9 112123829 112124003 -30147441 - MER117 DNA MER1_type -21 176 2 224 175 35 0 chr9 112124587 112124644 -30146800 + CT-rich Low_complexity Low_complexity 1 59 0 387 295 93 0 chr9 112124806 112124945 -30146499 - MIR3 SINE MIR -41 167 16 351 169 0 0 chr9 112125055 112125126 -30146318 + (CA)n Simple_repeat Simple_repeat 2 72 0 802 269 65 78 chr9 112125727 112125990 -30145454 - MLT1K LTR MaLR -34 554 298 935 176 79 49 chr9 112125990 112126206 -30145238 - ORSL DNA AcHobo 0 275 48 2301 82 20 0 chr9 112126206 112126498 -30144946 + AluY SINE Alu 1 298 -13 935 176 79 49 chr9 112126498 112126548 -30144896 - ORSL DNA AcHobo -227 48 1 802 269 65 78 chr9 112126548 112126748 -30144696 - MLT1K LTR MaLR -290 298 97 2210 129 7 0 chr9 112127434 112127736 -30143708 + AluSx SINE Alu 1 304 -8 237 285 62 31 chr9 112127773 112127903 -30143541 - L2 LINE L2 -585 2729 2596 1832 175 0 3 chr9 112127987 112128278 -30143166 + AluJo SINE Alu 1 290 -22 23 54 0 0 chr9 112128446 112128483 -30142961 + AT_rich Low_complexity Low_complexity 1 37 0 211 191 0 0 chr9 112128814 112128856 -30142588 + (CCA)n Simple_repeat Simple_repeat 3 44 0 2269 117 0 22 chr9 112129184 112129501 -30141943 - AluSx SINE Alu -2 310 1 333 231 26 13 chr9 112129501 112129579 -30141865 + MLT1A1 LTR MaLR 72 150 -215 330 68 0 0 chr9 112129593 112129637 -30141807 - Alu SINE Alu -258 44 1 777 182 8 0 chr9 112129884 112130016 -30141428 - FLAM_C SINE Alu -9 134 2 412 246 198 0 chr9 112130018 112130205 -30141239 + MER5C DNA MER1_type 101 324 0 559 182 0 0 chr9 112130208 112130296 -30141148 + AluSg/x SINE Alu 137 224 -88 2038 112 4 0 chr9 112130297 112130589 -30140855 + AluSx SINE Alu 17 309 0 306 248 72 48 chr9 112130611 112130736 -30140708 + MIR3 SINE MIR 78 205 -3 322 296 127 39 chr9 112130844 112131346 -30140098 + L2 LINE L2 2537 3085 -187 23 78 0 0 chr9 112131484 112131535 -30139909 + AT_rich Low_complexity Low_complexity 1 51 0 350 312 57 19 chr9 112131706 112131863 -30139581 - MIR SINE MIR -50 212 50 293 267 20 47 chr9 112132394 112132544 -30138900 + L2 LINE L2 3167 3312 -1 210 265 191 0 chr9 112132692 112132760 -30138684 - MIR3 SINE MIR -47 161 81 191 250 0 0 chr9 112132781 112132825 -30138619 - MIR SINE MIR -84 124 81 1058 171 68 0 chr9 112132902 112133107 -30138337 - MER20 DNA MER1_type 0 219 1 2055 121 3 13 chr9 112133840 112134138 -30137306 + AluSx SINE Alu 1 295 -17 972 139 0 0 chr9 112134239 112134376 -30137068 - AluSq/x SINE Alu -175 137 1 207 0 0 0 chr9 112134386 112134409 -30137035 + (TTG)n Simple_repeat Simple_repeat 2 24 0 562 284 8 63 chr9 112135739 112135993 -30135451 + MIR SINE MIR 15 254 -8 1794 142 50 0 chr9 112136028 112136310 -30135134 - AluJb SINE Alu -16 296 1 257 304 38 0 chr9 112136760 112136839 -30134605 - L2 LINE L2 -9 3304 3223 21 0 0 0 chr9 112136956 112136977 -30134467 + AT_rich Low_complexity Low_complexity 1 21 0 245 119 48 0 chr9 112137098 112137140 -30134304 - MER113 DNA MER1_type? -464 57 14 228 67 0 0 chr9 112137855 112137885 -30133559 - LTR50 LTR ERVL 0 795 766 246 196 304 11 chr9 112137977 112138069 -30133375 - MER5A DNA MER1_type 0 189 71 182 36 0 36 chr9 112138071 112138099 -30133345 + (TCTCC)n Simple_repeat Simple_repeat 2 28 0 1870 149 27 7 chr9 112138101 112138396 -30133048 - AluJb SINE Alu -6 306 6 1234 246 253 4 chr9 112138448 112138973 -30132471 - LTR50 LTR ERVL -139 656 1 508 269 17 46 chr9 112138973 112139139 -30132305 - MER117 DNA MER1_type -36 161 1 1996 154 3 0 chr9 112139208 112139507 -30131937 + AluSx SINE Alu 3 302 -10 26 50 0 0 chr9 112139507 112139547 -30131897 + AT_rich Low_complexity Low_complexity 1 40 0 537 335 51 0 chr9 112139761 112139958 -30131486 + MIR SINE MIR 21 227 -35 424 234 36 0 chr9 112140515 112140626 -30130818 - MER103 DNA DNA -17 149 35 1942 141 3 28 chr9 112140892 112141212 -30130232 + AluJb SINE Alu 1 312 0 192 325 58 58 chr9 112142296 112142502 -30128942 + L2 LINE L2 2720 2925 -389 2064 133 7 0 chr9 112142529 112142815 -30128629 - AluSx SINE Alu -24 288 1 797 220 6 0 chr9 112142818 112142977 -30128467 - L1PB4 LINE L1 -2 6154 5995 295 244 116 0 chr9 112143142 112143228 -30128216 + MER5A DNA MER1_type 7 102 -87 219 221 68 166 chr9 112143167 112143330 -30128114 - MER5A DNA MER1_type -22 167 21 * 393 324 132 30 chr9 112143457 112143889 -30127555 + L2 LINE L2 2346 2821 -493 1937 143 7 3 chr9 112144213 112144520 -30126924 - AluJb SINE Alu -4 308 1 21 0 0 0 chr9 112144900 112144921 -30126523 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 112145180 112145203 -30126241 + AT_rich Low_complexity Low_complexity 1 23 0 943 242 128 71 chr9 112145636 112146009 -30125435 - MLT1F LTR MaLR -3 539 128 2077 119 7 0 chr9 112146009 112146302 -30125142 - AluSx SINE Alu -17 295 1 943 242 128 71 chr9 112146302 112146437 -30125007 - MLT1F LTR MaLR -414 128 2 202 306 99 58 chr9 112146561 112146682 -30124762 - L2 LINE L2 -48 3224 3099 2129 91 0 57 chr9 112146746 112147064 -30124380 - AluSq SINE Alu -13 300 1 365 293 112 16 chr9 112147171 112147359 -30124085 + MIR SINE MIR 28 233 -29 1310 92 0 0 chr9 112147845 112148019 -30123425 - AluSg/x SINE Alu -6 306 133 2218 112 0 0 chr9 112148236 112148548 -30122896 - AluSx SINE Alu 0 312 1 1672 185 7 0 chr9 112148950 112149252 -30122192 - AluJo SINE Alu -8 304 1 748 102 0 19 chr9 112149379 112149487 -30121957 + U6 snRNA snRNA 1 106 -1 341 253 83 75 chr9 112149490 112149755 -30121689 - HAL1b LINE L1 -5 6116 1114 327 194 237 0 chr9 112149815 112149908 -30121536 - HAL1b LINE L1 -367 981 867 317 255 110 55 chr9 112149997 112150142 -30121302 + MIR SINE MIR 53 205 -57 2631 177 11 14 chr9 112150556 112151076 -30120368 + L1MB4 LINE L1 5662 6180 0 215 274 25 153 chr9 112152100 112152257 -30119187 + MIR3 SINE MIR 9 145 -63 325 302 0 38 chr9 112154152 112154258 -30117186 - L3 LINE CR1 -88 1489 1388 202 196 18 89 chr9 112154333 112154389 -30117055 - L2 LINE L2 -2898 416 365 459 290 29 0 chr9 112154868 112155006 -30116438 - MIR3 SINE MIR -37 171 30 977 155 0 0 chr9 112155584 112155756 -30115688 + AluSg/x SINE Alu 133 304 0 2178 115 0 3 chr9 112155756 112156069 -30115375 + AluSq SINE Alu 1 312 -1 1741 148 0 27 chr9 112158903 112159201 -30112243 + AluJo SINE Alu 1 290 -22 1960 121 25 0 chr9 112159204 112159486 -30111958 + AluSx SINE Alu 6 294 -18 279 312 75 16 chr9 112159609 112159795 -30111649 - MER117 DNA MER1_type 0 197 1 214 145 26 40 chr9 112159995 112160071 -30111373 + CT-rich Low_complexity Low_complexity 2 76 0 319 316 196 25 chr9 112160613 112160888 -30110556 - L1ME4a LINE L1 -82 6039 5718 226 259 206 29 chr9 112160888 112161058 -30110386 - L1M2 LINE L1 -605 5695 5496 2157 107 3 0 chr9 112161166 112161465 -30109979 + AluSx SINE Alu 1 300 -12 2587 151 48 20 chr9 112163115 112163442 -30108002 - L1MB5 LINE L1 -8 6166 5819 1980 127 3 16 chr9 112163442 112163757 -30107687 - AluSx SINE Alu -1 311 1 2587 151 48 20 chr9 112163757 112163934 -30107510 - L1MB5 LINE L1 -355 5819 5648 192 337 74 74 chr9 112163939 112163994 -30107450 + MIR SINE MIR 73 127 -135 919 126 0 15 chr9 112163994 112164129 -30107315 - FLAM_C SINE Alu 0 133 1 192 337 74 74 chr9 112164129 112164263 -30107181 + MIR SINE MIR 126 262 0 1578 129 59 22 chr9 112164382 112164653 -30106791 + AluJo SINE Alu 1 281 -31 1135 341 50 30 chr9 112165474 112166218 -30105226 - L2 LINE L2 -355 2959 2201 1119 174 25 42 chr9 112166661 112166902 -30104542 - Charlie1 DNA MER1_type -1092 1669 1433 969 104 0 0 chr9 112166941 112167066 -30104378 + AluSq SINE Alu 1 125 -188 1099 118 41 0 chr9 112167130 112167300 -30104144 + AluSq SINE Alu 124 300 -13 1567 183 17 7 chr9 112167467 112167768 -30103676 + AluJo SINE Alu 1 304 -8 2203 78 7 3 chr9 112167848 112168143 -30103301 - AluSx SINE Alu -16 296 1 893 192 5 50 chr9 112168261 112168459 -30102985 - MER5A DNA MER1_type 0 189 1 467 289 0 8 chr9 112168461 112168582 -30102862 + MIR SINE MIR 11 130 -132 492 207 5 106 chr9 112168588 112168776 -30102668 + MER104 DNA Tc2 10 178 -2 299 198 161 25 chr9 112168781 112168862 -30102582 + MIR SINE MIR 159 250 -12 1780 121 85 0 chr9 112169278 112169550 -30101894 + AluSx SINE Alu 1 295 -17 378 42 0 0 chr9 112169593 112169641 -30101803 + (TG)n Simple_repeat Simple_repeat 2 49 0 480 292 113 45 chr9 112169654 112169971 -30101473 - L2 LINE L2 -223 3090 2757 720 148 0 70 chr9 112170009 112170151 -30101293 + FLAM_A SINE Alu 1 132 -1 405 0 0 0 chr9 112170166 112170211 -30101233 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr9 112170316 112170338 -30101106 + AT_rich Low_complexity Low_complexity 1 22 0 2193 102 3 3 chr9 112170463 112170767 -30100677 + AluSx SINE Alu 1 304 -8 363 329 88 48 chr9 112170770 112170998 -30100446 - L2 LINE L2 -20 3252 3016 613 284 29 5 chr9 112172186 112172394 -30099050 - L1ME LINE L1 -361 5760 5548 282 147 15 103 chr9 112172396 112172464 -30098980 - L3 LINE CR1 -20 1557 1496 528 319 17 0 chr9 112172466 112172704 -30098740 - L1ME LINE L1 -803 5556 5315 26 0 0 0 chr9 112172920 112172946 -30098498 + AT_rich Low_complexity Low_complexity 1 26 0 3057 136 50 60 chr9 112174172 112174653 -30096791 - L1MB7 LINE L1 -5 6179 5704 2115 92 18 0 chr9 112174653 112174937 -30096507 + AluSp SINE Alu 1 289 -24 3057 136 50 60 chr9 112174937 112175060 -30096384 - L1MB7 LINE L1 -480 5704 5581 2138 63 4 0 chr9 112175669 112175937 -30095507 + L1PA8 LINE L1 5900 6168 -4 2334 81 0 0 chr9 112176225 112176535 -30094909 - AluY SINE Alu -1 310 1 267 54 0 0 chr9 112176833 112176870 -30094574 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr9 112177462 112177484 -30093960 + AT_rich Low_complexity Low_complexity 1 22 0 499 215 215 0 chr9 112178073 112178217 -30093227 - MER5A DNA MER1_type -1 188 14 1713 144 0 18 chr9 112178571 112178849 -30092595 - AluSx SINE Alu -39 273 1 21 36 0 0 chr9 112179247 112179275 -30092169 + AT_rich Low_complexity Low_complexity 1 28 0 505 252 52 7 chr9 112179890 112180025 -30091419 + L2 LINE L2 3173 3313 0 1645 154 0 38 chr9 112180679 112180971 -30090473 + AluSx SINE Alu 1 281 -31 823 224 0 18 chr9 112181848 112182013 -30089431 - AluJb SINE Alu -14 298 137 517 289 53 53 chr9 112182031 112182239 -30089205 + MIR SINE MIR 53 260 -2 1573 181 45 0 chr9 112182628 112182915 -30088529 - AluJb SINE Alu -12 300 1 476 286 161 15 chr9 112182984 112183183 -30088261 - MIR SINE MIR 0 262 35 182 304 0 0 chr9 112183191 112183237 -30088207 + MIR3 SINE MIR 157 202 -6 651 254 108 9 chr9 112183287 112183500 -30087944 + MIR SINE MIR 10 243 -19 359 255 102 32 chr9 112183971 112184128 -30087316 - MER5A DNA MER1_type -19 170 3 1956 121 50 0 chr9 112184969 112185266 -30086178 - AluSx SINE Alu 0 312 1 28 0 0 26 chr9 112185456 112185476 -30085968 + AT_rich Low_complexity Low_complexity 1 21 -17 1676 145 14 24 chr9 112185476 112185773 -30085671 + AluJb SINE Alu 1 294 -18 28 0 0 26 chr9 112185773 112185791 -30085653 + AT_rich Low_complexity Low_complexity 21 38 0 698 188 0 0 chr9 112186246 112186363 -30085081 + FLAM_C SINE Alu 2 118 -25 26 30 0 0 chr9 112186383 112186416 -30085028 + AT_rich Low_complexity Low_complexity 1 33 0 1856 146 14 0 chr9 112188293 112188573 -30082871 - AluSx SINE Alu -28 284 1 420 289 26 7 chr9 112188581 112188733 -30082711 - MIR SINE MIR -72 190 36 529 257 55 66 chr9 112188801 112189073 -30082371 - MER102b DNA MER1_type -1 340 72 847 127 64 51 chr9 112189927 112190084 -30081360 + FRAM SINE Alu 1 158 -18 415 204 140 0 chr9 112190089 112190182 -30081262 + L1MA9 LINE L1 6169 6274 -38 24 41 0 20 chr9 112190209 112190236 -30081208 + AT_rich Low_complexity Low_complexity 1 28 -20 1954 124 3 13 chr9 112190236 112190535 -30080909 - AluSx SINE Alu -16 296 1 24 41 0 20 chr9 112190535 112190556 -30080888 + AT_rich Low_complexity Low_complexity 28 48 0 432 308 164 0 chr9 112190712 112190858 -30080586 - MER5A DNA MER1_type -6 183 14 183 42 0 0 chr9 112191109 112191133 -30080311 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 389 48 0 32 chr9 112191422 112191485 -30079959 + L1PA6 LINE L1 6094 6154 0 263 71 12 107 chr9 112191485 112191569 -30079875 + (TA)n Simple_repeat Simple_repeat 1 76 0 539 206 222 0 chr9 112191732 112191912 -30079532 - MER58A DNA MER1_type -1 223 4 255 284 71 31 chr9 112192055 112192182 -30079262 + MIR SINE MIR 110 241 -21 1422 160 85 18 chr9 112192232 112192513 -30078931 + AluJb SINE Alu 1 300 -12 838 194 161 0 chr9 112193690 112193870 -30077574 - MER3 DNA MER1_type 0 209 1 452 295 25 0 chr9 112193872 112193994 -30077450 - MIR3 SINE MIR -3 205 81 255 103 0 0 chr9 112194835 112194874 -30076570 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 1589 197 14 7 chr9 112194900 112195059 -30076385 - AluJo SINE Alu -16 296 133 2397 96 0 3 chr9 112195059 112195360 -30076084 - AluSc SINE Alu -9 300 1 1589 197 14 7 chr9 112195360 112195494 -30075950 - AluJo SINE Alu -179 133 1 192 158 0 0 chr9 112195563 112195601 -30075843 + (CTA)n Simple_repeat Simple_repeat 1 38 0 2241 90 0 48 chr9 112195630 112195941 -30075503 - AluY SINE Alu -15 296 1 229 265 77 77 chr9 112196683 112196800 -30074644 + L2 LINE L2 3156 3272 0 291 218 99 10 chr9 112196992 112197093 -30074351 - MER5A DNA MER1_type -77 112 3 549 158 0 0 chr9 112197698 112197799 -30073645 + (TCCA)n Simple_repeat Simple_repeat 2 102 0 586 334 78 39 chr9 112197799 112198107 -30073337 - L2 LINE L2 0 3272 2953 494 325 70 56 chr9 112198181 112198612 -30072832 - L2 LINE L2 -571 2743 2307 1786 201 0 3 chr9 112199121 112199434 -30072010 - AluJb SINE Alu 0 312 1 412 209 22 0 chr9 112200652 112200743 -30070701 + MER3 DNA MER1_type 110 202 -7 1866 153 0 3 chr9 112251397 112251691 -30019753 + AluSx SINE Alu 3 295 -17 206 174 22 0 chr9 112251950 112251996 -30019448 + A-rich Low_complexity Low_complexity 5 51 0 364 198 0 2 chr9 112252336 112252404 -30019040 + MIR SINE MIR 92 159 -49 1134 264 231 0 chr9 112252492 112252942 -30018502 + MLT1H1 LTR MaLR 1 554 -1 238 263 274 0 chr9 112252981 112253076 -30018368 - MIR SINE MIR -123 139 19 1935 103 37 0 chr9 112253501 112253792 -30017652 + AluSx SINE Alu 1 301 0 2287 96 0 3 chr9 112253803 112254115 -30017329 + AluSx SINE Alu 1 311 -1 188 86 29 0 chr9 112254358 112254393 -30017051 + (TA)n Simple_repeat Simple_repeat 1 36 0 279 261 228 0 chr9 112254455 112254547 -30016897 + MIR SINE MIR 150 262 0 201 189 0 27 chr9 112255767 112255804 -30015640 + MIR SINE MIR 32 67 -141 183 277 59 41 chr9 112255939 112256044 -30015400 + MIR SINE MIR 4 113 -95 501 276 123 20 chr9 112256171 112256374 -30015070 - MIR SINE MIR -8 254 31 574 148 139 0 chr9 112256540 112256641 -30014803 + FLAM_A SINE Alu 4 118 -15 188 371 34 22 chr9 112257095 112257184 -30014260 + MIR SINE MIR 23 112 -150 724 276 32 40 chr9 112257200 112257450 -30013994 - MIR SINE MIR -5 257 10 1115 212 25 17 chr9 112257605 112257841 -30013603 - MER8 DNA MER2_type 0 239 2 390 264 52 58 chr9 112258600 112258755 -30012689 - L2 LINE L2 -1 3271 3118 680 275 55 34 chr9 112259828 112260064 -30011380 + MIR SINE MIR 20 260 -2 269 160 23 84 chr9 112260073 112260204 -30011240 + (TTATA)n Simple_repeat Simple_repeat 4 126 0 281 186 0 17 chr9 112260214 112260273 -30011171 - L1ME LINE L1 -375 5746 5689 242 287 87 35 chr9 112260667 112260782 -30010662 + L2 LINE L2 3133 3253 -19 1847 144 0 38 chr9 112261696 112262016 -30009428 + AluJb SINE Alu 1 308 -4 22 0 0 0 chr9 112262133 112262155 -30009289 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr9 112262403 112262426 -30009018 + AT_rich Low_complexity Low_complexity 1 23 0 933 164 6 0 chr9 112262493 112262652 -30008792 - AluJo/FRAM SINE Alu -19 293 134 1760 154 7 3 chr9 112262652 112262950 -30008494 - AluJo SINE Alu -13 299 1 355 297 157 11 chr9 112262974 112263159 -30008285 + MIR SINE MIR 22 233 -29 414 274 145 55 chr9 112263607 112263932 -30007512 + MLT1J2 LTR MaLR 67 420 -30 456 302 6 44 chr9 112264332 112264491 -30006953 + MIR SINE MIR 100 252 -10 343 324 133 14 chr9 112264544 112264754 -30006690 + MIR SINE MIR 15 249 -13 471 267 107 0 chr9 112267345 112267476 -30003968 - MER91B DNA MER1_type -42 148 4 180 346 62 0 chr9 112267562 112267643 -30003801 + MIR3 SINE MIR 83 168 -40 2164 116 0 0 chr9 112267969 112268271 -30003173 + AluSx SINE Alu 1 302 -10 239 248 168 10 chr9 112268368 112268469 -30002975 + L2 LINE L2 3137 3253 -19 335 314 160 6 chr9 112268732 112268888 -30002556 - MIR3 SINE MIR -26 182 3 314 340 72 21 chr9 112268991 112269185 -30002259 - L3 LINE CR1 -765 812 609 216 271 0 43 chr9 112269205 112269275 -30002169 - L2 LINE L2 -24 3248 3182 * 343 278 143 38 chr9 112269274 112269483 -30001961 - MIR SINE MIR -31 231 1 205 345 157 43 chr9 112269701 112269982 -30001462 + L2 LINE L2 2955 3267 -5 921 169 13 13 chr9 112270090 112270244 -30001200 - AluJo SINE Alu -8 294 141 1948 144 0 0 chr9 112270398 112270689 -30000755 - AluJb SINE Alu -20 292 2 641 271 128 0 chr9 112271034 112271237 -30000207 - MIR SINE MIR -21 241 13 180 262 0 24 chr9 112271345 112271387 -30000057 - MIR SINE MIR -62 146 106 1692 177 0 3 chr9 112271418 112271717 -29999727 - AluJb SINE Alu -12 300 3 823 179 8 0 chr9 112271718 112271852 -29999592 - AluJo SINE Alu -176 136 2 243 309 12 12 chr9 112272646 112272730 -29998714 + L2 LINE L2 3228 3311 -2 1216 166 151 4 chr9 112272784 112273062 -29998382 + MER33 DNA MER1_type 6 324 0 251 299 58 51 chr9 112273162 112273299 -29998145 + MIR SINE MIR 85 222 -40 21 0 0 0 chr9 112273814 112273835 -29997609 + AT_rich Low_complexity Low_complexity 1 21 0 237 368 0 28 chr9 112275121 112275227 -29996217 + MIR3 SINE MIR 58 160 -48 414 269 108 42 chr9 112275748 112275915 -29995529 + L3 LINE CR1 1393 1570 -7 327 250 68 11 chr9 112278293 112278381 -29993063 - MIR SINE MIR -70 192 100 34 24 0 0 chr9 112279363 112279404 -29992040 + AT_rich Low_complexity Low_complexity 1 41 0 735 178 25 0 chr9 112279453 112279571 -29991873 + FLAM_A SINE Alu 1 121 -12 231 346 118 0 chr9 112279582 112279709 -29991735 + L3 LINE CR1 907 1048 -529 445 285 93 16 chr9 112279798 112279991 -29991453 - L3 LINE CR1 -199 1378 1171 535 269 107 21 chr9 112280236 112280330 -29991114 - MER112 DNA MER1_type -6 254 169 2280 81 3 3 chr9 112280330 112280639 -29990805 + AluSc SINE Alu 1 309 0 535 269 107 21 chr9 112280639 112280778 -29990666 - MER112 DNA MER1_type -91 169 1 310 261 33 0 chr9 112280786 112280878 -29990566 + (CATA)n Simple_repeat Simple_repeat 1 95 0 1398 174 34 27 chr9 112280912 112281206 -29990238 - AluJo SINE Alu -16 296 1 1804 135 10 23 chr9 112282075 112282379 -29989065 + AluSx SINE Alu 6 305 -7 385 229 178 36 chr9 112283288 112283457 -29987987 - MIR SINE MIR -45 217 37 495 233 152 10 chr9 112283846 112283961 -29987483 + MER3 DNA MER1_type 6 102 -92 1712 185 0 7 chr9 112283961 112284263 -29987181 - AluJo SINE Alu -12 300 1 495 233 152 10 chr9 112284263 112284301 -29987143 + MER3 DNA MER1_type 102 133 -61 276 241 24 24 chr9 112284432 112284515 -29986929 + MER5B DNA MER1_type 96 178 0 1931 265 169 20 chr9 112284805 112285967 -29985477 - L2 LINE L2 0 3313 1968 836 220 13 0 chr9 112286022 112286181 -29985263 + FRAM SINE Alu 1 161 -15 391 325 56 19 chr9 112286719 112286879 -29984565 + MIR SINE MIR 95 260 -2 218 255 0 0 chr9 112287352 112287403 -29984041 + L2 LINE L2 2891 2941 -331 206 307 137 53 chr9 112289146 112289488 -29981956 + L2 LINE L2 2852 3222 -50 273 286 71 9 chr9 112289841 112289953 -29981491 - L2 LINE L2 -16 3256 3138 625 258 42 32 chr9 112290916 112291133 -29980311 + MIR SINE MIR 20 238 -24 928 133 113 44 chr9 112291515 112291718 -29979726 - MER20 DNA MER1_type 0 219 3 469 262 173 11 chr9 112291781 112292005 -29979439 - MIR SINE MIR -2 260 3 189 143 0 0 chr9 112292841 112292869 -29978575 - MIR SINE MIR -116 146 119 226 327 188 0 chr9 112293558 112293659 -29977785 - L2 LINE L2 -15 3257 3138 1421 138 135 0 chr9 112293964 112294224 -29977220 - AluJo SINE Alu -17 295 1 307 273 10 50 chr9 112294418 112294517 -29976927 - MIR SINE MIR -2 260 166 391 211 11 53 chr9 112295043 112295138 -29976306 - MIR SINE MIR -117 145 55 808 151 7 34 chr9 112295147 112295293 -29976151 - FLAM_C SINE Alu -1 142 1 2447 169 22 13 chr9 112295339 112295795 -29975649 - MER65C LTR ERV1 0 461 2 216 242 132 55 chr9 112295796 112295887 -29975557 + MIR SINE MIR 133 230 -32 198 349 16 0 chr9 112296794 112296857 -29974587 + L2 LINE L2 3117 3180 -92 1634 213 88 62 chr9 112296888 112297198 -29974246 - L1MD2 LINE L1 0 8041 7741 1943 113 10 17 chr9 112297198 112297498 -29973946 - AluSx SINE Alu -14 298 1 1634 213 88 62 chr9 112297498 112297655 -29973789 - L1MD2 LINE L1 -300 7741 7590 2153 102 0 3 chr9 112297655 112297959 -29973485 - AluSx SINE Alu -9 303 1 1634 213 88 62 chr9 112297959 112298027 -29973417 - L1MD2 LINE L1 -451 7590 6243 403 192 0 0 chr9 112298031 112298104 -29973340 + L2 LINE L2 3194 3266 -6 2052 110 0 3 chr9 112298198 112298515 -29972929 - AluSx SINE Alu 0 316 1 412 308 41 14 chr9 112298570 112298716 -29972728 + L3 LINE CR1 1380 1529 -48 543 220 17 8 chr9 112298806 112298924 -29972520 + MER94 DNA DNA 12 130 -4 183 320 49 54 chr9 112298980 112299183 -29972261 + L2 LINE L2 2736 2937 -377 1954 98 16 23 chr9 112300015 112300321 -29971123 + AluSq SINE Alu 1 304 -9 578 286 43 0 chr9 112300401 112300562 -29970882 - MIR3 SINE MIR -11 197 30 628 194 24 107 chr9 112300811 112301017 -29970427 - MER5A DNA MER1_type 0 189 1 2731 83 16 11 chr9 112301345 112301718 -29969726 - THE1C LTR MaLR 0 375 1 253 215 54 54 chr9 112302218 112302311 -29969133 - MER5A DNA MER1_type -88 101 9 2401 52 3 7 chr9 112302879 112303189 -29968255 - AluY SINE Alu -2 309 1 1622 156 80 0 chr9 112303192 112303467 -29967977 - AluSx SINE Alu -15 297 1 517 187 23 0 chr9 112304431 112304533 -29966911 - MER5A DNA MER1_type -83 106 2 203 324 46 42 chr9 112304784 112305000 -29966444 + L2 LINE L2 3000 3216 -56 341 289 61 0 chr9 112305514 112305628 -29965816 - MIR SINE MIR -81 181 61 293 295 16 8 chr9 112306120 112306242 -29965202 - L1ME LINE L1 -382 5739 5617 718 258 325 17 chr9 112306662 112307007 -29964437 - L2 LINE L2 0 3313 2863 183 42 0 0 chr9 112307171 112307195 -29964249 + (CCCTG)n Simple_repeat Simple_repeat 2 25 0 184 229 0 0 chr9 112307198 112307233 -29964211 + MIR3 SINE MIR 124 158 -50 410 75 15 0 chr9 112307459 112307526 -29963918 + (TCCA)n Simple_repeat Simple_repeat 2 69 0 217 274 12 24 chr9 112307535 112307619 -29963825 - L2 LINE L2 -21 3251 3169 1142 188 24 8 chr9 112307695 112307950 -29963494 + L1MB4 LINE L1 4964 5222 -924 1584 149 37 0 chr9 112307952 112308220 -29963224 + AluJb SINE Alu 1 278 -34 4486 139 53 46 chr9 112308227 112308546 -29962898 + L1MB4 LINE L1 5283 5598 -582 1466 156 39 14 chr9 112308546 112308828 -29962616 + AluJb SINE Alu 1 289 -23 4486 139 53 46 chr9 112308828 112309400 -29962044 + L1MB4 LINE L1 5598 6180 0 216 91 45 23 chr9 112309426 112309470 -29961974 + A-rich Low_complexity Low_complexity 2 46 0 314 236 94 57 chr9 112311657 112311763 -29959681 - MIR SINE MIR -116 146 37 182 300 200 25 chr9 112312307 112312427 -29959017 - MIR3 SINE MIR -1 207 67 642 299 75 17 chr9 112313185 112313426 -29958018 - L3 LINE CR1 -37 1540 1286 352 290 122 15 chr9 112313474 112313605 -29957839 - MIR SINE MIR -82 180 36 218 292 14 14 chr9 112313642 112313714 -29957730 - L3 LINE CR1 -287 1290 1219 240 165 59 47 chr9 112314544 112314629 -29956815 + L1ME3A LINE L1 5955 6040 -130 768 165 0 30 chr9 112316611 112316744 -29954700 + FLAM_A SINE Alu 1 129 -4 367 179 135 32 chr9 112316753 112316909 -29954535 + L1MC4 LINE L1 7629 7800 -242 351 298 105 22 chr9 112317799 112317980 -29953464 + L1ME3A LINE L1 5131 5326 -820 1021 274 28 22 chr9 112317986 112318303 -29953141 + L1ME3A LINE L1 5381 5699 -471 1393 136 26 0 chr9 112318303 112318531 -29952913 + L1PA15 LINE L1 5927 6160 -5 1692 242 61 0 chr9 112318617 112319046 -29952398 + L1ME3A LINE L1 5711 6165 -5 972 84 8 0 chr9 112319261 112319392 -29952052 + AluSq/x SINE Alu 1 132 -180 2023 120 13 0 chr9 112319394 112319695 -29951749 + AluSq SINE Alu 1 305 -8 656 287 108 46 chr9 112319848 112320172 -29951272 + L2 LINE L2 2928 3271 -1 727 211 0 0 chr9 112320331 112320464 -29950980 + FLAM_A SINE Alu 9 141 -1 445 208 208 27 chr9 112320509 112320658 -29950786 - MER5A DNA MER1_type 0 189 14 323 210 109 50 chr9 112321289 112321408 -29950036 + MER5B DNA MER1_type 21 146 -32 2333 43 0 0 chr9 112322319 112322632 -29948812 - AluY SINE Alu 0 313 1 223 258 76 0 chr9 112322724 112322790 -29948654 + MIR SINE MIR 178 248 -14 2074 102 3 3 chr9 112323304 112323597 -29947847 + AluSx SINE Alu 1 293 -19 1084 161 5 10 chr9 112324477 112324676 -29946768 + AluJo SINE Alu 100 297 -15 443 212 124 9 chr9 112324804 112324917 -29946527 - MER5A DNA MER1_type 0 189 64 509 172 88 140 chr9 112324927 112325028 -29946416 - L1MC4 LINE L1 -11 8031 7926 2159 95 7 3 chr9 112325028 112325324 -29946120 - AluSx SINE Alu -15 297 1 509 172 88 140 chr9 112325324 112325472 -29945972 - L1MC4 LINE L1 -116 7926 7795 457 263 114 35 chr9 112325786 112326075 -29945369 + L2 LINE L2 2827 3138 -175 759 243 126 67 chr9 112326078 112326482 -29944962 - L2 LINE L2 0 3313 2886 382 261 78 14 chr9 112326522 112326664 -29944780 + L2 LINE L2 3162 3312 -1 31 0 0 0 chr9 112326884 112326915 -29944529 + GC_rich Low_complexity Low_complexity 1 31 0 250 288 133 14 chr9 112327526 112327693 -29943751 + L1ME4a LINE L1 5723 5869 -252 1708 174 13 3 chr9 112327693 112327992 -29943452 + AluJo SINE Alu 1 302 -10 250 288 133 14 chr9 112327992 112328109 -29943335 + L1ME4a LINE L1 5869 6041 -80 325 316 200 7 chr9 112328229 112328384 -29943060 - MIR SINE MIR -49 213 29 291 171 23 125 chr9 112329536 112329558 -29941886 - MER116 DNA Mariner -1 79 56 1580 189 7 0 chr9 112329558 112329849 -29941595 + AluJb SINE Alu 1 293 -19 291 171 23 125 chr9 112329849 112329914 -29941530 - MER116 DNA Mariner -24 56 1 2064 105 0 26 chr9 112330467 112330771 -29940673 + AluSx SINE Alu 1 296 -16 1205 252 144 24 chr9 112330881 112331333 -29940111 - L2 LINE L2 -4 3309 2804 264 247 47 113 chr9 112332162 112332312 -29939132 + MER5A DNA MER1_type 1 140 -49 203 270 112 22 chr9 112332240 112332329 -29939115 - MER5A DNA MER1_type -50 139 43 * 1654 164 0 20 chr9 112332331 112332623 -29938821 - AluJo SINE Alu -26 286 1 2364 63 0 7 chr9 112332795 112333095 -29938349 - AluY SINE Alu -13 298 1 666 122 0 0 chr9 112333515 112333622 -29937822 + (TTCC)n Simple_repeat Simple_repeat 4 110 0 1732 189 0 0 chr9 112333635 112333947 -29937497 - AluJb SINE Alu 0 312 1 2336 85 0 0 chr9 112335197 112335504 -29935940 - AluY SINE Alu -4 307 1 822 118 0 0 chr9 112335964 112336074 -29935370 + FLAM_C SINE Alu 9 118 -25 511 263 104 93 chr9 112337227 112337321 -29934123 + L1ME4a LINE L1 5644 5736 -385 2306 87 3 0 chr9 112337321 112337621 -29933823 + AluSp SINE Alu 1 301 -12 288 0 0 0 chr9 112337621 112337653 -29933791 + (TA)n Simple_repeat Simple_repeat 2 33 0 511 263 104 93 chr9 112337653 112338029 -29933415 + L1ME4a LINE L1 5735 6120 -1 357 191 167 48 chr9 112338695 112338821 -29932623 + MLT1G1 LTR MaLR 405 590 -4 318 330 25 8 chr9 112338906 112339024 -29932420 + L2 LINE L2 3193 3312 -1 307 231 185 77 chr9 112339031 112339161 -29932283 - MER5A DNA MER1_type -34 155 12 378 339 6 24 chr9 112339212 112339377 -29932067 - MER5A DNA MER1_type -7 182 21 198 354 61 0 chr9 112339566 112339648 -29931796 + MIR SINE MIR 119 205 -57 1583 167 3 41 chr9 112340069 112340363 -29931081 - AluJb SINE Alu -28 284 2 315 328 74 0 chr9 112340545 112340667 -29930777 + L2 LINE L2 3142 3272 0 204 318 162 44 chr9 112340980 112341411 -29930033 + L2 LINE L2 2306 2787 -527 382 184 175 26 chr9 112341501 112341615 -29929829 - L2 LINE L2 -1 3312 3182 652 201 34 7 chr9 112341712 112341861 -29929583 + MLT1H LTR MaLR 21 173 -376 285 138 17 17 chr9 112341987 112342045 -29929399 + MLT1G1 LTR MaLR 525 582 -13 1671 174 7 14 chr9 112342074 112342368 -29929076 - AluJb SINE Alu -19 293 2 2401 155 40 12 chr9 112342572 112342992 -29928452 - MSTB1 LTR MaLR 0 432 1 297 341 140 38 chr9 112343261 112343864 -29927580 - L2 LINE L2 -52 3220 2555 294 336 159 9 chr9 112344050 112344276 -29927168 - L2 LINE L2 -862 2452 2193 207 341 114 0 chr9 112344408 112344496 -29926948 + L2 LINE L2 3172 3269 -3 358 259 9 151 chr9 112344686 112344898 -29926546 - MER5A DNA MER1_type -1 188 7 1315 257 108 13 chr9 112344907 112345370 -29926074 + LTR33 LTR ERVL 2 508 -13 386 252 49 49 chr9 112345422 112345545 -29925899 - L2 LINE L2 -4 3268 3146 280 269 0 0 chr9 112345973 112346040 -29925404 + MIR SINE MIR 86 152 -110 307 324 186 16 chr9 112346112 112346359 -29925085 + L2 LINE L2 2983 3271 -1 321 210 16 0 chr9 112346393 112346455 -29924989 + Tigger5 DNA MER2_type 20 82 -2241 1424 141 36 0 chr9 112346457 112346677 -29924767 + Tigger5 DNA MER2_type 2094 2321 -2 409 289 0 41 chr9 112346696 112346817 -29924627 - MIR SINE MIR -110 152 37 295 272 105 57 chr9 112346913 112347069 -29924375 - MIR SINE MIR -11 251 79 2293 88 0 3 chr9 112347069 112347366 -29924078 + AluY SINE Alu 5 300 -11 295 272 105 57 chr9 112347366 112347437 -29924007 - MIR SINE MIR -183 79 13 210 105 0 53 chr9 112347579 112347617 -29923827 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 2037 131 0 3 chr9 112348358 112348648 -29922796 - AluJb SINE Alu -23 289 1 403 298 26 98 chr9 112348684 112348989 -29922455 + L2 LINE L2 2947 3229 -43 433 191 7 121 chr9 112349074 112349215 -29922229 - MIR3 SINE MIR -28 180 56 327 234 104 0 chr9 112349294 112349371 -29922073 + MER5A DNA MER1_type 9 93 -96 24 32 0 0 chr9 112349706 112349737 -29921707 + AT_rich Low_complexity Low_complexity 1 31 0 375 282 58 32 chr9 112349767 112349955 -29921489 + L1ME LINE L1 5507 5702 -452 23 0 0 0 chr9 112350038 112350061 -29921383 + AT_rich Low_complexity Low_complexity 1 23 0 880 184 94 30 chr9 112350087 112350288 -29921156 + MIR SINE MIR 11 224 -38 2233 77 7 14 chr9 112350305 112350602 -29920842 - AluSc SINE Alu -14 295 1 1507 177 30 4 chr9 112351227 112351498 -29919946 + AluJo SINE Alu 14 291 -21 525 316 59 8 chr9 112351527 112351764 -29919680 - MIR SINE MIR -12 250 2 2033 128 0 26 chr9 112351986 112352291 -29919153 - AluSx SINE Alu -15 297 1 1709 155 19 48 chr9 112352293 112352603 -29918841 - AluJb SINE Alu -11 301 1 700 253 6 22 chr9 112352668 112352846 -29918598 + MER5B DNA MER1_type 1 175 -3 697 206 29 11 chr9 112352992 112353157 -29918287 + L1ME1 LINE L1 6005 6166 -4 3349 236 64 44 chr9 112353163 112353636 -29917808 + L1ME3 LINE L1 4178 4640 -1522 1706 188 0 7 chr9 112353636 112353939 -29917505 + AluJo SINE Alu 1 301 -11 3349 236 64 44 chr9 112353939 112354424 -29917020 + L1ME3 LINE L1 4640 5114 -1048 1844 159 0 17 chr9 112354424 112354749 -29916695 + AluSx SINE Alu 1 312 0 3349 236 64 44 chr9 112354749 112354761 -29916683 + L1ME3 LINE L1 5114 5124 -1038 1403 149 24 12 chr9 112354761 112355010 -29916434 + L1MA4 LINE L1 6043 6294 -6 3349 236 64 44 chr9 112355010 112355957 -29915487 + L1ME3 LINE L1 5124 6141 -21 186 133 0 0 chr9 112356016 112356046 -29915398 + (TTCTCC)n Simple_repeat Simple_repeat 4 33 0 1148 176 5 0 chr9 112356479 112356666 -29914778 + MER5A DNA MER1_type 2 189 0 889 188 34 0 chr9 112356886 112357062 -29914382 - L1MB3 LINE L1 0 6183 6002 189 0 0 0 chr9 112357154 112357175 -29914269 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 841 148 0 23 chr9 112357175 112357294 -29914150 - FLAM_C SINE Alu -193 119 2 4873 168 31 13 chr9 112357304 112358428 -29913016 - L1MB3 LINE L1 -1 6182 5040 481 222 58 70 chr9 112358732 112358903 -29912541 + MIR SINE MIR 48 216 -46 237 261 84 42 chr9 112358975 112359094 -29912350 + L2 LINE L2 3147 3270 -2 274 130 174 0 chr9 112359369 112359415 -29912029 - MER81 DNA DNA -36 78 25 1317 93 0 22 chr9 112360191 112360373 -29911071 - AluSq SINE Alu -2 311 134 2806 28 0 6 chr9 112360373 112360692 -29910752 - AluYb8 SINE Alu -1 317 1 2108 62 0 84 chr9 112361741 112362085 -29909359 + AluSx SINE Alu 1 318 0 257 276 16 87 chr9 112362597 112362724 -29908720 + L2 LINE L2 2701 2818 -496 1988 155 3 0 chr9 112362754 112363051 -29908393 - AluSx SINE Alu -12 300 3 3480 142 54 7 chr9 112363100 112363678 -29907766 - L1MB5 LINE L1 0 6174 5570 277 214 169 11 chr9 112363778 112363867 -29907577 + L2 LINE L2 3167 3269 -3 497 308 6 35 chr9 112366134 112366306 -29905138 - MIR SINE MIR -55 207 41 198 0 0 0 chr9 112366389 112366411 -29905033 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 780 83 0 0 chr9 112366475 112366584 -29904860 + (TTTC)n Simple_repeat Simple_repeat 4 112 0 2220 100 0 0 chr9 112366590 112366869 -29904575 - AluSg SINE Alu -31 279 1 273 29 0 0 chr9 112367056 112367090 -29904354 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 214 197 66 0 chr9 112367684 112367745 -29903699 + CT-rich Low_complexity Low_complexity 2 66 0 2331 107 0 0 chr9 112367895 112368195 -29903249 - AluSx SINE Alu -12 300 1 568 169 15 15 chr9 112368195 112368325 -29903119 + CT-rich Low_complexity Low_complexity 1 130 0 626 260 14 14 chr9 112368574 112368720 -29902724 - MIR3 SINE MIR -49 159 14 2039 132 41 0 chr9 112368975 112369270 -29902174 - AluSx SINE Alu -5 307 1 1164 136 66 5 chr9 112369276 112369474 -29901970 - L1PA16 LINE L1 -16 6150 5941 2424 185 7 17 chr9 112369780 112369958 -29901486 - MER47B DNA MER2_type -1905 418 240 2752 139 31 5 chr9 112369958 112370375 -29901069 + MSTA LTR MaLR 1 428 0 2424 185 7 17 chr9 112370375 112370618 -29900826 - MER47B DNA MER2_type -2083 240 1 1076 212 9 78 chr9 112370652 112370827 -29900617 - L1ME LINE L1 -3359 2721 2578 2210 117 7 0 chr9 112370827 112371126 -29900318 + AluSx SINE Alu 1 301 -11 1076 212 9 78 chr9 112371126 112371285 -29900159 - L1ME LINE L1 -3502 2578 2410 576 199 5 81 chr9 112371411 112371597 -29899847 - L1ME LINE L1 -3653 2427 2256 747 151 0 0 chr9 112371598 112371704 -29899740 - AluJb SINE Alu -12 300 195 1108 151 0 0 chr9 112371791 112371950 -29899494 - AluJo SINE Alu -153 159 1 3736 233 48 68 chr9 112371950 112372039 -29899405 - L1ME LINE L1 -3821 2259 2170 777 200 0 0 chr9 112372039 112372164 -29899280 + FLAM_A SINE Alu 2 126 -7 3736 233 48 68 chr9 112372164 112372230 -29899214 - L1ME LINE L1 -3910 2170 2104 2161 108 20 3 chr9 112372230 112372525 -29898919 - AluSx SINE Alu -8 304 5 3736 233 48 68 chr9 112372525 112373236 -29898208 - L1ME LINE L1 -3976 2104 1380 1861 161 7 7 chr9 112373236 112373535 -29897909 + AluJo SINE Alu 1 299 -13 3736 233 48 68 chr9 112373535 112373722 -29897722 - L1ME LINE L1 -4700 1380 1191 3153 186 31 46 chr9 112373722 112373960 -29897484 - MER6A DNA MER2_type -260 605 365 1820 145 13 51 chr9 112373960 112374271 -29897173 + AluJo SINE Alu 1 299 -13 3153 186 31 46 chr9 112374271 112374646 -29896798 - MER6A DNA MER2_type -500 365 1 3736 233 48 68 chr9 112374646 112374854 -29896590 - L1ME LINE L1 -4889 1191 980 1759 157 10 16 chr9 112374854 112375160 -29896284 - AluJo SINE Alu -8 304 1 3736 233 48 68 chr9 112375160 112375773 -29895671 - L1ME LINE L1 -5100 980 435 325 263 79 35 chr9 112375861 112375975 -29895469 - L1ME LINE L1 -5593 477 359 613 288 69 38 chr9 112376601 112376858 -29894586 + MIR SINE MIR 2 261 -1 478 247 71 45 chr9 112377175 112377329 -29894115 + MER5A DNA MER1_type 31 188 -1 267 345 0 0 chr9 112377334 112377421 -29894023 + GA-rich Low_complexity Low_complexity 3 89 0 240 283 30 30 chr9 112377739 112377838 -29893606 - L2 LINE L2 -196 3076 2978 373 240 57 57 chr9 112378126 112378301 -29893143 - L1ME4a LINE L1 0 6121 5947 2020 137 10 0 chr9 112378330 112378622 -29892822 - AluSx SINE Alu -17 295 1 445 255 43 82 chr9 112379972 112380156 -29891288 - MIR SINE MIR -66 196 20 185 221 55 158 chr9 112380232 112380274 -29891170 + L2 LINE L2 2654 2699 -615 2259 114 0 0 chr9 112380274 112380581 -29890863 - AluSg SINE Alu -3 307 1 185 221 55 158 chr9 112380581 112380665 -29890779 + L2 LINE L2 2699 2767 -547 368 208 10 0 chr9 112381109 112381210 -29890234 + (TGGA)n Simple_repeat Simple_repeat 1 102 0 262 360 37 15 chr9 112381459 112381595 -29889849 - L3 LINE CR1 -183 1394 1256 245 282 59 12 chr9 112381607 112381692 -29889752 - MLT1K LTR MaLR 0 588 500 1960 142 0 30 chr9 112381843 112382146 -29889298 - AluSx SINE Alu -18 294 1 446 303 26 32 chr9 112382453 112382608 -29888836 - L3 LINE CR1 -414 1163 1010 251 228 51 76 chr9 112382586 112382665 -29888779 + L2 LINE L2 3236 3312 -1 * 795 266 92 82 chr9 112382977 112383466 -29887978 - MLT1J LTR MaLR -15 496 3 258 316 100 27 chr9 112383661 112383875 -29887569 + L2 LINE L2 2770 2997 -275 788 240 5 39 chr9 112385115 112385323 -29886121 + MER3 DNA MER1_type 5 205 -4 810 262 53 5 chr9 112387498 112387704 -29883740 + MIR SINE MIR 47 262 0 441 329 24 6 chr9 112388733 112388900 -29882544 - MIR SINE MIR -65 197 28 221 296 0 0 chr9 112388917 112388971 -29882473 + MIR3 SINE MIR 103 156 -52 743 59 0 10 chr9 112389738 112389840 -29881604 + (TTC)n Simple_repeat Simple_repeat 2 102 0 1864 209 47 47 chr9 112389877 112390455 -29880989 - L1ME1 LINE L1 -3 6443 5866 5234 235 59 25 chr9 112390458 112392161 -29879283 - L1ME1 LINE L1 -2210 4216 2456 1329 272 65 79 chr9 112392167 112392435 -29879009 - L1ME1 LINE L1 -4410 2197 1927 2147 114 0 0 chr9 112392435 112392736 -29878708 + AluSx SINE Alu 1 301 0 1329 272 65 79 chr9 112392736 112393257 -29878187 - L1ME1 LINE L1 -4680 1927 1226 40 21 0 0 chr9 112393979 112394026 -29877418 + AT_rich Low_complexity Low_complexity 1 47 0 206 352 23 65 chr9 112394538 112394772 -29876672 + L2 LINE L2 2864 3086 -186 235 234 31 16 chr9 112395162 112395226 -29876218 - MER5A DNA MER1_type -1 188 124 2094 282 147 30 chr9 112395272 112396067 -29875377 + L1PA15 LINE L1 2 889 -5898 * 18056 196 13 16 chr9 112396034 112399559 -29871885 + L1PA15 LINE L1 1243 4786 -2030 864 224 0 0 chr9 112399559 112399724 -29871720 + FRAM SINE Alu 1 165 -1 18056 196 13 16 chr9 112399724 112401750 -29869694 + L1PA15 LINE L1 4786 6816 0 239 286 0 0 chr9 112401762 112401818 -29869626 - MER5A DNA MER1_type -124 65 10 521 353 31 0 chr9 112402206 112402430 -29869014 - MIR SINE MIR -12 250 20 377 221 173 0 chr9 112402508 112402612 -29868832 - L1MB7 LINE L1 -19 6165 6044 998 192 13 26 chr9 112402612 112402793 -29868651 + MLT2B2 LTR ERVL 224 451 -64 222 37 0 0 chr9 112402793 112402820 -29868624 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 998 192 13 26 chr9 112402820 112402885 -29868559 + MLT2B2 LTR ERVL 451 515 0 2940 173 59 2 chr9 112402887 112403413 -29868031 - L1MB7 LINE L1 -142 6042 5487 1959 147 7 0 chr9 112403426 112403719 -29867725 - AluJo SINE Alu -17 295 1 2094 132 0 3 chr9 112403786 112404081 -29867363 - AluSx SINE Alu -18 294 1 370 302 44 73 chr9 112404544 112405067 -29866377 + L1M4 LINE L1 2533 3040 -3106 652 267 123 5 chr9 112405468 112405663 -29865781 + MIR SINE MIR 2 219 -43 436 202 18 37 chr9 112405663 112405772 -29865672 - MER94 DNA DNA -23 111 5 2119 118 17 0 chr9 112405953 112406240 -29865204 + AluSq SINE Alu 1 292 -21 390 307 149 29 chr9 112406304 112406754 -29864690 - L2 LINE L2 -859 2455 1952 348 345 73 37 chr9 112407006 112407215 -29864229 - MIR SINE MIR -32 230 11 2478 69 0 0 chr9 112407977 112408281 -29863163 - AluY SINE Alu -5 306 3 2283 81 10 3 chr9 112408564 112408859 -29862585 - AluSq SINE Alu -16 297 1 3959 181 57 27 chr9 112408861 112408937 -29862507 + Charlie1a DNA MER1_type 1 73 -2688 2069 186 17 3 chr9 112408937 112409297 -29862147 - MLT1A1 LTR MaLR 0 365 1 3959 181 57 27 chr9 112409297 112409501 -29861943 + Charlie1a DNA MER1_type 73 269 -2492 2171 136 0 0 chr9 112409501 112409802 -29861642 + AluSx SINE Alu 2 302 -10 3959 181 57 27 chr9 112409802 112410341 -29861103 + Charlie1a DNA MER1_type 269 846 -609 2275 174 10 25 chr9 112410398 112410794 -29860650 + MLT1B LTR MaLR 1 390 0 1921 146 0 26 chr9 112411401 112411703 -29859741 - AluSx SINE Alu -18 294 1 624 278 38 19 chr9 112412073 112412285 -29859159 + MLT1J1 LTR MaLR 3 218 -228 313 100 0 163 chr9 112412372 112412452 -29858992 + MLT1J2 LTR MaLR 363 429 -21 1482 174 91 11 chr9 112412551 112412838 -29858606 + AluJo SINE Alu 1 310 -2 333 62 0 0 chr9 112412927 112412975 -29858469 + (TG)n Simple_repeat Simple_repeat 2 49 0 384 298 30 8 chr9 112413570 112413701 -29857743 - MIR3 SINE MIR -14 194 61 1208 249 27 24 chr9 112413724 112414061 -29857383 - LTR16A LTR ERVL 0 450 113 210 71 0 0 chr9 112414288 112414316 -29857128 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1177 204 87 59 chr9 112414740 112415098 -29856346 + LTR37A LTR ERV1 6 373 -53 2559 160 44 18 chr9 112415350 112415805 -29855639 + MLT1C LTR MaLR 1 467 0 4089 130 39 18 chr9 112416821 112417372 -29854072 - L1 LINE L1 -1311 4835 4264 2155 116 3 23 chr9 112417372 112417682 -29853762 - AluSx SINE Alu -8 304 1 4089 130 39 18 chr9 112417682 112417852 -29853592 - L1 LINE L1 -1882 4264 4099 381 115 66 0 chr9 112419200 112419261 -29852183 - LTR50 LTR ERVL 0 795 731 365 253 0 0 chr9 112419766 112419853 -29851591 - L2 LINE L2 0 3313 3227 2190 174 47 8 chr9 112420845 112421247 -29850197 - MSTB1 LTR MaLR 0 432 15 2694 93 28 0 chr9 112421799 112422153 -29849291 + THE1B LTR MaLR 1 364 0 446 193 48 0 chr9 112422523 112422606 -29848838 - MER91B DNA MER1_type -27 163 77 258 310 0 35 chr9 112422614 112422701 -29848743 - MER91B DNA MER1_type -61 129 46 1992 96 0 11 chr9 112422806 112423066 -29848378 + AluSx SINE Alu 42 298 -14 828 338 122 18 chr9 112423167 112423788 -29847656 + L3 LINE CR1 552 1237 -340 1591 195 7 7 chr9 112424114 112424412 -29847032 + AluJo SINE Alu 1 298 -14 280 259 75 81 chr9 112424543 112424717 -29846727 + L3 LINE CR1 1391 1563 -14 725 273 35 51 chr9 112424812 112424860 -29846584 - L1MC5 LINE L1 -396 7565 7518 1014 176 0 0 chr9 112424860 112425025 -29846419 - L1MB5 LINE L1 -3 6171 6007 725 273 35 51 chr9 112425025 112425287 -29846157 - L1MC5 LINE L1 -443 7518 7260 2501 85 0 0 chr9 112425327 112425634 -29845810 - AluSg SINE Alu -3 307 1 2493 50 0 0 chr9 112425907 112426205 -29845239 + AluY SINE Alu 1 298 -13 2087 129 0 3 chr9 112426232 112426527 -29844917 + AluSx SINE Alu 1 294 -18 511 242 45 15 chr9 112426542 112426674 -29844770 - L1MC5 LINE L1 -855 7106 6971 506 319 54 25 chr9 112426873 112427114 -29844330 + MIR SINE MIR 14 261 -1 839 215 98 8 chr9 112427437 112427683 -29843761 + LTR33 LTR ERVL 17 284 -237 476 277 13 13 chr9 112427712 112427871 -29843573 + LTR33 LTR ERVL 348 506 -15 507 187 0 0 chr9 112428021 112428112 -29843332 - FRAM SINE Alu -10 166 76 429 122 0 0 chr9 112428511 112428585 -29842859 + (TG)n Simple_repeat Simple_repeat 1 74 0 1890 133 7 20 chr9 112429234 112429528 -29841916 - AluJb SINE Alu -22 290 1 258 132 0 0 chr9 112431284 112431322 -29840122 + tRNA-Phe-TTC tRNA tRNA 1 38 -38 561 181 23 96 chr9 112432432 112432609 -29838835 - MER106B DNA MER1_type 0 1059 896 509 231 0 34 chr9 112432630 112432658 -29838786 - MLT1C LTR MaLR -6 461 434 16327 117 22 24 chr9 112432658 112434218 -29837226 + Tigger1 DNA MER2_type 1 1559 -859 2292 83 0 0 chr9 112434218 112434536 -29836908 + AluSc SINE Alu 1 318 0 16327 117 22 24 chr9 112434536 112435395 -29836049 + Tigger1 DNA MER2_type 1559 2418 0 509 231 0 34 chr9 112435395 112435483 -29835961 - MLT1C LTR MaLR -33 434 349 888 82 0 0 chr9 112435488 112435610 -29835834 + (TTCC)n Simple_repeat Simple_repeat 4 125 0 246 263 101 0 chr9 112435640 112435739 -29835705 + L3 LINE CR1 1298 1406 -171 240 229 84 24 chr9 112435786 112435869 -29835575 - MIR SINE MIR -56 206 119 1026 252 100 68 chr9 112435896 112436277 -29835167 - MSTD LTR MaLR -3 393 1 2198 96 14 0 chr9 112436874 112437177 -29834267 - AluSp SINE Alu 0 307 1 541 308 103 12 chr9 112437441 112437735 -29833709 - MLT1I LTR MaLR 0 409 52 682 205 0 0 chr9 112437873 112437985 -29833459 + AluJo SINE Alu 95 206 -106 276 335 80 71 chr9 112438043 112438395 -29833049 - L2 LINE L2 -2 3270 2916 2395 105 46 35 chr9 112439661 112440031 -29831413 + THE1C LTR MaLR 1 374 -1 403 307 73 7 chr9 112440110 112440247 -29831197 + L2 LINE L2 3123 3268 -4 873 179 64 46 chr9 112440537 112440710 -29830734 - MER45A DNA AcHobo -1 177 2 180 266 223 11 chr9 112441192 112441286 -29830158 + L2 LINE L2 3199 3312 -1 4607 152 17 51 chr9 112441336 112442219 -29829225 + L1MA9 LINE L1 5422 6274 -38 686 310 105 45 chr9 112442249 112442947 -29828497 - L2 LINE L2 0 3313 2571 2317 234 44 20 chr9 112443070 112443618 -29827826 + MER77 LTR ERV1 41 601 -4 288 0 0 0 chr9 112444086 112444118 -29827326 + (TG)n Simple_repeat Simple_repeat 1 32 0 2049 199 174 31 chr9 112444571 112445088 -29826356 - MLT1E LTR MaLR 0 593 3 313 323 24 54 chr9 112446295 112446462 -29824982 - MER5A DNA MER1_type -2 187 26 222 150 0 0 chr9 112446992 112447032 -29824412 + (TATAA)n Simple_repeat Simple_repeat 4 43 0 34 42 0 0 chr9 112447248 112447296 -29824148 + AT_rich Low_complexity Low_complexity 1 48 0 1801 235 55 26 chr9 112448568 112449133 -29822311 - L1MC4 LINE L1 -140 7902 7322 2353 101 19 25 chr9 112449134 112449500 -29821944 - THE1B LTR MaLR 0 364 1 248 89 0 44 chr9 112449543 112449588 -29821856 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 2093 200 108 18 chr9 112449592 112449997 -29821447 - L1MC4 LINE L1 -980 7062 6592 323 44 22 0 chr9 112449997 112450042 -29821402 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 2093 200 108 18 chr9 112450042 112450191 -29821253 - L1MC4 LINE L1 -1450 6592 6458 280 279 31 108 chr9 112452266 112452488 -29818956 + Charlie8 DNA MER1_type 102 1393 -1024 191 311 14 0 chr9 112453090 112453164 -29818280 - L2 LINE L2 -2521 793 719 303 384 0 14 chr9 112453899 112454037 -29817407 + L2 LINE L2 2554 2689 -625 242 254 84 0 chr9 112454436 112454507 -29816937 + MER91C DNA MER1_type 31 107 -33 285 109 0 0 chr9 112454651 112454697 -29816747 + (CA)n Simple_repeat Simple_repeat 2 47 0 180 77 0 0 chr9 112454697 112454723 -29816721 + (TC)n Simple_repeat Simple_repeat 1 26 0 189 182 0 0 chr9 112454877 112454932 -29816512 + (TA)n Simple_repeat Simple_repeat 2 56 0 246 337 124 0 chr9 112454935 112455024 -29816420 + L2 LINE L2 3134 3233 -39 231 88 0 0 chr9 112455361 112455395 -29816049 + (TG)n Simple_repeat Simple_repeat 2 35 0 402 231 68 43 chr9 112455603 112455720 -29815724 - L2 LINE L2 -5 3308 3189 7404 82 11 9 chr9 112455892 112456947 -29814497 + MER11C LTR ERVK 1 1057 -14 2170 100 4 0 chr9 112457027 112457308 -29814136 + AluSg SINE Alu 7 288 -22 282 185 0 0 chr9 112458267 112458321 -29813123 - Alu SINE Alu -6 296 243 879 195 6 6 chr9 112458442 112458601 -29812843 - FRAM SINE Alu -16 160 2 3759 104 21 7 chr9 112459609 112460168 -29811276 + L1PB2 LINE L1 5577 6143 -8 344 301 58 6 chr9 112460261 112460429 -29811015 + MIR SINE MIR 28 201 -61 2529 143 24 26 chr9 112460855 112461281 -29810163 + MSTB LTR MaLR 1 425 -1 701 296 49 11 chr9 112461579 112461821 -29809623 - MIR SINE MIR -14 248 1 640 362 123 14 chr9 112461956 112462588 -29808856 - L2 LINE L2 -534 2780 2080 2274 204 23 8 chr9 112462638 112463157 -29808287 + L1ME1 LINE L1 5635 6161 -5 202 297 162 20 chr9 112463165 112463313 -29808131 - L2 LINE L2 -1298 2016 1848 1156 246 36 76 chr9 112463333 112463809 -29807635 + MLT1J LTR MaLR 3 459 -52 525 164 75 15 chr9 112464239 112464373 -29807071 - L1MB7 LINE L1 0 6184 6043 183 262 27 81 chr9 112464390 112464539 -29806905 + L2 LINE L2 3121 3261 -52 266 252 49 110 chr9 112466569 112466815 -29804629 + MIR SINE MIR 5 237 -25 794 192 100 80 chr9 112466836 112467086 -29804358 + MIR SINE MIR 7 261 -1 1700 162 48 0 chr9 112467326 112467598 -29803846 - AluJo SINE Alu -27 285 1 26 0 0 0 chr9 112467598 112467624 -29803820 + AT_rich Low_complexity Low_complexity 1 26 0 598 243 53 20 chr9 112467633 112467785 -29803659 + FRAM SINE Alu 5 161 -5 327 194 31 10 chr9 112467785 112467883 -29803561 + GA-rich Low_complexity Low_complexity 1 100 0 1882 191 51 5 chr9 112468529 112468938 -29802506 - MSTA LTR MaLR 0 428 1 3731 85 0 0 chr9 112469313 112469831 -29801613 - THE1B-int LTR MaLR -1062 518 1 2181 123 25 33 chr9 112469831 112470198 -29801246 - THE1B LTR MaLR 0 364 1 1929 177 3 3 chr9 112470319 112470663 -29800781 + L1PA16 LINE L1 5807 6150 -16 371 192 131 0 chr9 112470705 112470804 -29800640 + L1M4 LINE L1 3061 3172 -2974 424 317 16 8 chr9 112471411 112471534 -29799910 - L2 LINE L2 0 3272 3149 228 326 0 0 chr9 112471893 112471991 -29799453 - L1MB7 LINE L1 -1876 5932 5835 226 147 0 0 chr9 112472000 112472034 -29799410 + tRNA-Ala-GCG tRNA tRNA 6 39 -36 678 272 100 12 chr9 112472034 112472354 -29799090 - L1MC4a LINE L1 -1966 5842 5495 1999 140 65 14 chr9 112472693 112473049 -29798395 + THE1C LTR MaLR 1 374 -1 828 293 162 11 chr9 112473111 112473463 -29797981 - L2 LINE L2 0 3313 2909 467 273 95 90 chr9 112473464 112474051 -29797393 - HAL1b LINE L1 -612 736 147 1581 213 0 29 chr9 112475169 112475479 -29795965 - AluJo SINE Alu -11 301 1 1361 255 31 55 chr9 112475791 112476300 -29795144 + LTR33 LTR ERVL 25 521 0 2283 154 86 8 chr9 112476943 112477338 -29794106 + MSTB LTR MaLR 1 426 0 441 294 74 25 chr9 112477423 112477586 -29793858 - L2 LINE L2 0 3272 3102 191 129 29 43 chr9 112477981 112478051 -29793393 + A-rich Low_complexity Low_complexity 3 71 0 444 218 134 34 chr9 112478340 112478495 -29792949 - MER5A DNA MER1_type -13 176 4 305 100 20 0 chr9 112479488 112479538 -29791906 + (TG)n Simple_repeat Simple_repeat 2 52 0 2291 55 3 35 chr9 112479761 112480072 -29791372 + AluY SINE Alu 1 301 -10 2776 143 48 2 chr9 112480189 112480694 -29790750 - L1MB4 LINE L1 -8 6172 5645 272 275 66 33 chr9 112480698 112480789 -29790655 - L2 LINE L2 -10 3303 3210 540 175 63 35 chr9 112481144 112481287 -29790157 - MER69 DNA AcHobo -2379 147 1 577 272 45 25 chr9 112481291 112481534 -29789910 - L2 LINE L2 -524 2790 2543 243 0 0 0 chr9 112482206 112482233 -29789211 + (TG)n Simple_repeat Simple_repeat 2 28 0 189 230 0 0 chr9 112482262 112482336 -29789108 + GA-rich Low_complexity Low_complexity 1 74 0 1043 253 75 38 chr9 112482575 112482682 -29788762 - L2 LINE L2 -705 2609 2507 390 21 0 0 chr9 112482682 112482729 -29788715 + (TG)n Simple_repeat Simple_repeat 2 48 0 1043 253 75 38 chr9 112482729 112483072 -29788372 - L2 LINE L2 -807 2507 2142 1060 150 50 55 chr9 112483302 112483522 -29787922 - THE1B LTR MaLR -2 362 144 374 286 53 18 chr9 112483522 112483693 -29787751 + L1M4 LINE L1 4284 4460 -1686 1340 188 9 100 chr9 112483956 112484387 -29787057 - L1MB8 LINE L1 0 6178 5787 12274 172 12 13 chr9 112484560 112487018 -29784426 - L1P LINE L1 -1482 4664 2210 348 200 10 10 chr9 112487013 112487113 -29784331 - L1MEc LINE L1 -5235 1161 1062 * 2848 7 0 0 chr9 112487268 112487575 -29783869 - AluYa5 SINE Alu -4 307 1 380 242 0 0 chr9 112488495 112488594 -29782850 - L1M4 LINE L1 -2097 4049 3951 1781 235 95 10 chr9 112488684 112489453 -29781991 - L1M4 LINE L1 -2391 3755 2922 6505 83 36 8 chr9 112489469 112490848 -29780596 - L1PA13 LINE L1 -19 6144 4748 2134 162 3 3 chr9 112491445 112491810 -29779634 + MER47A DNA MER2_type 2 366 0 628 305 91 89 chr9 112492976 112493787 -29777657 - L2 LINE L2 -888 2426 1614 2325 99 0 0 chr9 112493987 112494289 -29777155 + AluSx SINE Alu 1 302 -10 316 158 171 12 chr9 112496511 112496593 -29774851 + MIR SINE MIR 71 165 -97 1534 223 89 17 chr9 112497083 112497553 -29773891 - Charlie4a DNA MER1_type -1 507 4 211 354 0 0 chr9 112497754 112497819 -29773625 + L2 LINE L2 3110 3174 -98 452 313 47 0 chr9 112498876 112499026 -29772418 - MIR3 SINE MIR -6 202 46 433 236 19 28 chr9 112499243 112499349 -29772095 + MLT1C LTR MaLR 1 105 -400 * 2518 112 27 0 chr9 112499348 112499723 -29771721 + MSTA LTR MaLR 44 428 0 1144 205 86 30 chr9 112499727 112500064 -29771380 + MLT1C LTR MaLR 110 465 -2 280 302 36 18 chr9 112500096 112500252 -29771192 + MIR SINE MIR 7 153 -62 184 227 0 0 chr9 112500332 112500376 -29771068 - MIR SINE MIR -109 153 110 344 290 10 10 chr9 112500711 112500811 -29770633 + MER5B DNA MER1_type 1 100 -78 225 128 21 0 chr9 112500979 112501026 -29770418 - MER5C DNA MER1_type -50 274 227 192 167 218 0 chr9 112501071 112501149 -29770295 - MER5C DNA MER1_type -95 229 135 2250 231 10 23 chr9 112501149 112501750 -29769694 + L1ME1 LINE L1 5569 6161 -5 14100 119 29 40 chr9 112501789 112503037 -29768407 - Tigger1 DNA MER2_type 0 2418 1158 230 54 0 27 chr9 112503037 112503074 -29768370 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 14100 119 29 40 chr9 112503074 112503102 -29768342 - Tigger1 DNA MER2_type -1260 1158 1131 3770 36 0 0 chr9 112503102 112503552 -29767892 - L1PA4 LINE L1 -1 6154 5705 14100 119 29 40 chr9 112503552 112504719 -29766725 - Tigger1 DNA MER2_type -1287 1131 1 347 344 0 0 chr9 112504722 112504812 -29766632 - MER5C DNA MER1_type -234 90 1 188 258 65 0 chr9 112505546 112505608 -29765836 + MIR SINE MIR 86 151 -111 2358 91 10 0 chr9 112505615 112505924 -29765520 - AluSx SINE Alu 0 312 1 327 49 0 0 chr9 112507599 112507640 -29763804 + (CA)n Simple_repeat Simple_repeat 2 42 0 697 275 82 18 chr9 112507955 112508240 -29763204 - L1MC/D LINE L1 -599 5557 5288 3205 127 26 0 chr9 112508317 112508853 -29762591 - L1MA4 LINE L1 -5 6295 5746 2382 109 23 2 chr9 112508854 112509249 -29762195 + L1MA4 LINE L1 5322 5724 -576 322 309 107 33 chr9 112509339 112510060 -29761384 - L1MC/D LINE L1 -1038 5108 4335 328 176 11 182 chr9 112510361 112510537 -29760907 - L2 LINE L2 -56 3257 3112 2311 255 60 50 chr9 112510554 112511728 -29759716 + L1M4 LINE L1 2653 3837 -2309 897 204 51 6 chr9 112511844 112512001 -29759443 - AluJo SINE Alu -148 164 1 36005 85 16 11 chr9 112512075 112518185 -29753259 - L1PA8 LINE L1 -11 6161 11 271 187 13 27 chr9 112518762 112518837 -29752607 - LTR67 LTR ERVL -23 534 461 2037 126 0 11 chr9 112519372 112519658 -29751786 + AluSx SINE Alu 1 283 -29 747 232 45 0 chr9 112519977 112520175 -29751269 + LTR16A1 LTR ERVL 251 457 0 398 290 62 17 chr9 112520175 112520351 -29751093 + L1MC4a LINE L1 5746 5929 -1879 2269 118 0 3 chr9 112521328 112521634 -29749810 - AluSq SINE Alu -8 305 1 299 164 18 0 chr9 112521815 112521870 -29749574 - L2 LINE L2 -1 3271 3216 768 273 61 9 chr9 112522361 112522687 -29748757 + L1ME4a LINE L1 5560 5902 -219 241 265 60 0 chr9 112522719 112522802 -29748642 + L1ME4a LINE L1 5989 6076 -45 2288 102 0 7 chr9 112522826 112523129 -29748315 - AluSc SINE Alu -8 301 1 2805 88 0 0 chr9 112523205 112523569 -29747875 + THE1B LTR MaLR 1 364 0 6502 28 5 1 chr9 112524223 112525678 -29745766 + L1PA4 LINE L1 4565 6021 -134 205 278 0 0 chr9 112525950 112526004 -29745440 - L2 LINE L2 -2 3311 3258 800 191 20 98 chr9 112528248 112528452 -29742992 + MIR SINE MIR 6 193 -69 3229 186 34 10 chr9 112528916 112529627 -29741817 + L1MB7 LINE L1 5450 6177 -7 235 232 43 0 chr9 112529759 112529828 -29741616 + LTR67 LTR ERVL 2 73 -484 333 273 126 75 chr9 112529976 112530310 -29741134 + LTR67 LTR ERVL 207 557 0 222 208 62 0 chr9 112530447 112530495 -29740949 - MIR SINE MIR -61 147 97 1680 195 68 21 chr9 112532488 112532913 -29738531 + MLT1C LTR MaLR 23 467 0 249 350 39 0 chr9 112533031 112533134 -29738310 - MER91A DNA MER1_type -89 107 1 273 75 0 0 chr9 112534717 112534757 -29736687 + (TG)n Simple_repeat Simple_repeat 1 40 0 481 288 100 41 chr9 112535429 112535700 -29735744 - L3 LINE CR1 -2 1575 1289 275 390 91 0 chr9 112535747 112535934 -29735510 + MIR SINE MIR 49 252 -10 215 324 40 0 chr9 112535941 112536015 -29735429 - L3 LINE CR1 -291 1286 1210 22 0 0 0 chr9 112536143 112536165 -29735279 + AT_rich Low_complexity Low_complexity 1 22 0 330 211 22 0 chr9 112536189 112536279 -29735165 - MER113 DNA MER1_type? -313 208 117 2037 147 113 2 chr9 112536381 112536789 -29734655 + L1MC2 LINE L1 5883 6335 -9 446 287 159 9 chr9 112537468 112537789 -29733655 + LTR16A LTR ERVL 82 450 0 311 329 112 14 chr9 112537861 112538004 -29733440 - MIR SINE MIR 0 262 106 240 60 0 60 chr9 112538552 112538602 -29732842 + (TTC)n Simple_repeat Simple_repeat 2 48 0 556 179 186 0 chr9 112539143 112539299 -29732145 - MER53 DNA DNA 0 189 5 262 262 0 0 chr9 112540636 112540697 -29730747 + GA-rich Low_complexity Low_complexity 1 61 0 1811 136 11 17 chr9 112540804 112541091 -29730353 - AluJb SINE Alu -3 309 25 620 186 29 7 chr9 112541309 112541449 -29729995 - L1MD3 LINE L1 -5 7990 7848 306 320 61 44 chr9 112542044 112542225 -29729219 + MIR3 SINE MIR 22 205 -3 2191 132 0 0 chr9 112542719 112543023 -29728421 - AluSx SINE Alu -8 304 1 551 288 77 40 chr9 112543069 112543368 -29728076 - L2 LINE L2 -923 2391 2082 514 272 0 0 chr9 112543554 112543668 -29727776 - L2 LINE L2 0 3313 3200 736 271 53 8 chr9 112544729 112544995 -29726449 + L1MC4a LINE L1 5607 5884 -1924 1739 203 0 0 chr9 112545224 112545529 -29725915 + AluJb SINE Alu 1 305 -7 349 282 58 0 chr9 112546526 112546629 -29724815 + L2 LINE L2 3197 3305 -8 485 262 45 65 chr9 112546865 112547308 -29724136 + L1ME4a LINE L1 4401 4834 -1312 785 251 121 0 chr9 112547328 112547551 -29723893 - MIR SINE MIR -2 260 11 406 224 76 23 chr9 112547695 112547918 -29723526 + L1ME4a LINE L1 5275 5510 -656 1045 182 25 21 chr9 112547922 112548158 -29723286 - MER96B DNA MER1_type? -180 237 1 454 300 84 8 chr9 112548162 112548399 -29723045 + L1ME4a LINE L1 5571 5825 -296 1503 260 30 36 chr9 112548844 112549347 -29722097 + LTR67 LTR ERVL 58 557 0 1103 170 16 0 chr9 112549500 112549694 -29721750 - MER3 DNA MER1_type -7 202 6 227 246 77 0 chr9 112549907 112549972 -29721472 + MLT1L LTR MaLR 34 103 -512 396 309 0 0 chr9 112550103 112550200 -29721244 + MIR3 SINE MIR 81 177 -31 21 0 0 0 chr9 112550206 112550227 -29721217 + AT_rich Low_complexity Low_complexity 1 21 0 292 253 51 41 chr9 112551037 112551177 -29720267 - MIR SINE MIR -1 261 70 410 266 79 52 chr9 112551181 112551410 -29720034 + MLT1K LTR MaLR 311 545 -43 252 347 0 0 chr9 112552282 112552354 -29719090 + MIR SINE MIR 78 149 -59 234 366 30 0 chr9 112552738 112552839 -29718605 + L2 LINE L2 3169 3272 0 23 54 0 0 chr9 112554483 112554520 -29716924 + AT_rich Low_complexity Low_complexity 1 37 0 605 318 75 39 chr9 112555411 112555912 -29715532 - L2 LINE L2 -64 3249 2729 852 188 71 10 chr9 112557193 112557390 -29714054 - MER3 DNA MER1_type 0 209 1 34 24 0 0 chr9 112559379 112559420 -29712024 + AT_rich Low_complexity Low_complexity 1 41 0 574 133 26 18 chr9 112559420 112559533 -29711911 - L1PB4 LINE L1 -2 6154 6041 246 309 50 43 chr9 112560870 112561009 -29710435 - MIR SINE MIR -12 250 111 794 213 50 0 chr9 112561140 112561361 -29710083 + L1M4 LINE L1 4158 4389 -1757 313 297 0 0 chr9 112561515 112561589 -29709855 - MIR SINE MIR -144 118 45 237 224 26 53 chr9 112561819 112561895 -29709549 - MIR SINE MIR -60 202 129 443 336 12 8 chr9 112562248 112562422 -29709022 - MIR3 SINE MIR -2 206 33 1335 256 78 32 chr9 112562930 112563439 -29708005 - L2 LINE L2 0 3313 2777 2288 90 0 0 chr9 112563439 112563727 -29707717 - AluSc SINE Alu -21 288 1 1335 256 78 32 chr9 112563727 112563740 -29707704 - L2 LINE L2 -536 2777 2766 2761 203 69 26 chr9 112563754 112563915 -29707529 - L1ME2 LINE L1 -1 6163 6003 975 283 71 49 chr9 112563915 112564466 -29706978 - L1MB1 LINE L1 -187 6002 5440 524 236 159 24 chr9 112564444 112564652 -29706792 - L1MB1 LINE L1 -1042 5104 4869 * 194 255 39 0 chr9 112564653 112564704 -29706740 - L2 LINE L2 -528 2786 2734 219 297 79 30 chr9 112564811 112564912 -29706532 + L2 LINE L2 3208 3313 0 459 0 0 0 chr9 112565027 112565078 -29706366 + (CA)n Simple_repeat Simple_repeat 1 51 0 245 326 0 20 chr9 112566567 112566665 -29704779 + L2 LINE L2 3173 3268 -4 291 300 131 8 chr9 112567202 112567332 -29704112 + MIR3 SINE MIR 60 205 -3 1180 142 0 0 chr9 112567979 112568148 -29703296 + AluSg/x SINE Alu 135 303 -9 252 0 0 0 chr9 112568263 112568291 -29703153 + (TG)n Simple_repeat Simple_repeat 2 29 0 27 49 0 0 chr9 112569307 112569348 -29702096 + AT_rich Low_complexity Low_complexity 1 41 0 284 215 15 0 chr9 112569455 112569520 -29701924 - MIR SINE MIR -37 225 160 240 318 62 45 chr9 112569620 112569799 -29701645 - L2 LINE L2 -609 2705 2524 209 288 0 30 chr9 112569963 112570029 -29701415 - MIR SINE MIR -184 78 15 556 223 40 20 chr9 112570717 112570865 -29700579 - L1ME4a LINE L1 -3 6118 5968 207 324 15 0 chr9 112571180 112571248 -29700196 - MIR3 SINE MIR -2 206 138 755 154 24 0 chr9 112571260 112571383 -29700061 - L1MB1 LINE L1 -3 6165 6040 1309 293 69 12 chr9 112571393 112571410 -29700034 + L2 LINE L2 2378 2393 -920 1884 183 51 9 chr9 112571410 112571760 -29699684 - MLT1A1 LTR MaLR 0 365 1 1309 293 69 12 chr9 112571760 112572333 -29699111 + L2 LINE L2 2393 3000 -313 733 193 40 20 chr9 112572393 112572543 -29698901 + FRAM SINE Alu 23 175 -1 180 0 0 0 chr9 112572631 112572651 -29698793 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 188 246 0 53 chr9 112572699 112572756 -29698688 + L2 LINE L2 3251 3304 -9 686 298 96 46 chr9 112572766 112573197 -29698247 - L1ME4a LINE L1 -307 5814 5348 2565 132 23 9 chr9 112573715 112574148 -29697296 - L1MA4A LINE L1 -28 6275 5837 426 308 50 0 chr9 112574367 112574487 -29696957 - MER91C DNA MER1_type 0 140 15 241 308 120 8 chr9 112574573 112574690 -29696754 - MIR3 SINE MIR -35 173 44 239 219 0 27 chr9 112574693 112574766 -29696678 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 1108 268 103 11 chr9 112575076 112575453 -29695991 - L1MC4a LINE L1 -1844 5964 5553 207 0 0 0 chr9 112575542 112575565 -29695879 + (TG)n Simple_repeat Simple_repeat 2 24 0 298 161 0 0 chr9 112575862 112575918 -29695526 - L1MA5 LINE L1 -1 6299 6244 413 201 32 52 chr9 112575918 112576072 -29695372 - L1MC4a LINE L1 -2373 5435 5285 253 311 20 7 chr9 112576092 112576243 -29695201 - L1MA5 LINE L1 -2392 5416 5264 243 61 0 0 chr9 112576594 112576627 -29694817 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1260 245 11 0 chr9 112576907 112577180 -29694264 - L1ME1 LINE L1 -6 6160 5885 305 294 82 0 chr9 112577446 112577531 -29693913 - MIR SINE MIR -78 184 93 308 293 35 35 chr9 112577655 112577771 -29693673 + L2 LINE L2 3152 3267 -5 651 284 25 25 chr9 112579584 112579788 -29691656 + MIR SINE MIR 10 213 -49 1041 234 90 96 chr9 112579815 112580316 -29691128 - MLT1D LTR MaLR 0 505 8 386 316 105 28 chr9 112580328 112580783 -29690661 + L2 LINE L2 2567 3069 -203 534 138 9 17 chr9 112580958 112581074 -29690370 + (TGGA)n Simple_repeat Simple_repeat 3 117 0 213 212 121 121 chr9 112581370 112581502 -29689942 + MER5B DNA MER1_type 3 134 -44 408 223 268 6 chr9 112581514 112581671 -29689773 + MIR SINE MIR 55 252 -10 609 69 0 0 chr9 112581691 112581778 -29689666 + (CAT)n Simple_repeat Simple_repeat 3 89 0 346 278 179 33 chr9 112581787 112581938 -29689506 - MER5B DNA MER1_type -2 176 4 490 173 207 13 chr9 112581948 112582098 -29689346 - MER5A DNA MER1_type -2 187 9 575 246 54 12 chr9 112583030 112583197 -29688247 - MIR SINE MIR -78 184 11 575 299 35 24 chr9 112583224 112583486 -29687958 - MIR SINE MIR -5 257 5 415 233 12 0 chr9 112583609 112583695 -29687749 - MLT1D LTR MaLR -415 90 4 258 248 178 39 chr9 112583716 112583845 -29687599 + L2 LINE L2 2599 2745 -569 710 174 6 18 chr9 112584168 112584498 -29686946 + GA-rich Low_complexity Low_complexity 1 326 0 1244 115 0 0 chr9 112584632 112584814 -29686630 - L1MA4A LINE L1 -5 6298 6117 666 198 87 6 chr9 112584908 112585080 -29686364 + MIR SINE MIR 66 251 -11 807 169 0 0 chr9 112585098 112585216 -29686228 + FLAM_C SINE Alu 1 118 -25 23 0 0 0 chr9 112585216 112585239 -29686205 + AT_rich Low_complexity Low_complexity 1 23 0 877 204 51 6 chr9 112585473 112585630 -29685814 - AluJo SINE Alu -148 164 1 25292 43 8 4 chr9 112585691 112589454 -29681990 - L1PA6 LINE L1 -2 6152 2378 517 290 124 13 chr9 112591129 112591335 -29680109 - MIR SINE MIR -13 249 20 2412 82 0 0 chr9 112593127 112593421 -29678023 + AluY SINE Alu 1 294 -17 1786 163 10 17 chr9 112593433 112593727 -29677717 - AluJo SINE Alu -20 292 1 182 253 53 53 chr9 112593833 112593928 -29677516 - MIR SINE MIR -45 217 123 447 295 62 8 chr9 112593933 112594062 -29677382 - MIR3 SINE MIR -63 145 10 26 50 0 0 chr9 112596437 112596477 -29674967 + AT_rich Low_complexity Low_complexity 1 40 0 408 240 0 10 chr9 112596630 112596730 -29674714 - LTR67 LTR ERVL 0 557 459 199 355 66 25 chr9 112597077 112597198 -29674246 + L2 LINE L2 1068 1193 -2121 216 293 56 100 chr9 112597728 112598158 -29673286 + L2 LINE L2 1705 2115 -1199 536 178 9 19 chr9 112598331 112598438 -29673006 - L1MB4 LINE L1 -3 6177 6072 383 185 176 9 chr9 112598538 112598646 -29672798 + MIR SINE MIR 9 134 -128 2470 76 0 3 chr9 112599059 112599360 -29672084 - AluSq SINE Alu -13 300 1 377 289 0 18 chr9 112599808 112599926 -29671518 - MIR SINE MIR -61 147 33 22 0 0 0 chr9 112600505 112600527 -29670917 + GC_rich Low_complexity Low_complexity 1 22 0 1947 166 21 3 chr9 112602654 112602992 -29668452 - MER2 DNA MER2_type 0 344 1 444 51 0 0 chr9 112603024 112603083 -29668361 + (TG)n Simple_repeat Simple_repeat 1 59 0 222 248 124 16 chr9 112603381 112603502 -29667942 + MIR SINE MIR 81 214 -48 1616 144 72 0 chr9 112603617 112603881 -29667563 - AluJb SINE Alu -18 294 12 380 233 160 33 chr9 112604859 112605009 -29666435 - MIR SINE MIR -41 221 53 212 250 29 15 chr9 112605684 112605752 -29665692 - MIR SINE MIR -110 98 30 2359 93 72 17 chr9 112605753 112606098 -29665346 - THE1B LTR MaLR 0 364 1 348 276 138 7 chr9 112607397 112607549 -29663895 + MIR SINE MIR 14 185 -77 562 287 83 35 chr9 112607823 112608137 -29663307 - MER102a DNA MER1_type 0 330 2 957 179 43 16 chr9 112608713 112608897 -29662547 - MER5A DNA MER1_type 0 189 1 997 113 14 7 chr9 112609086 112609228 -29662216 + FRAM SINE Alu 1 143 -33 564 266 141 5 chr9 112612000 112612199 -29659245 - Charlie8 DNA MER1_type -2145 272 47 748 175 0 0 chr9 112612606 112612720 -29658724 - FLAM_A SINE Alu -19 114 1 365 283 18 9 chr9 112612722 112612835 -29658609 - L1ME1 LINE L1 -31 6135 6022 517 141 0 11 chr9 112613132 112613224 -29658220 + MER53 DNA DNA 99 189 0 271 81 27 0 chr9 112613327 112613364 -29658080 - U2 snRNA snRNA -150 38 1 1564 224 24 6 chr9 112613964 112614299 -29657145 + MER58B DNA MER1_type 1 341 0 225 0 0 0 chr9 112614537 112614562 -29656882 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1018 234 14 14 chr9 112615347 112615565 -29655879 - MER20 DNA MER1_type -1 218 1 438 116 0 0 chr9 112615715 112615784 -29655660 + L1PA6 LINE L1 6084 6152 -2 415 321 12 12 chr9 112615811 112615973 -29655471 + MER117 DNA MER1_type 3 164 -33 392 244 146 0 chr9 112616082 112616205 -29655239 + MER91B DNA MER1_type 50 190 0 252 337 41 0 chr9 112616268 112616366 -29655078 + L2 LINE L2 3136 3237 -35 653 205 103 11 chr9 112616395 112616580 -29654864 - Charlie4a DNA MER1_type -3 505 304 998 209 99 28 chr9 112616626 112616819 -29654625 - Charlie4a DNA MER1_type -1583 378 157 2114 154 19 24 chr9 112616819 112617196 -29654248 - THE1C LTR MaLR 0 375 1 998 209 99 28 chr9 112617196 112617284 -29654160 - Charlie4a DNA MER1_type -1804 157 77 186 250 0 0 chr9 112617592 112617632 -29653812 + L2 LINE L2 3228 3267 -5 1750 161 41 89 chr9 112618216 112618608 -29652836 - MLT1B LTR MaLR 0 390 18 191 290 72 0 chr9 112619109 112619178 -29652266 - MIR SINE MIR -108 154 81 1763 172 7 7 chr9 112619798 112620089 -29651355 - AluJb SINE Alu -21 291 1 304 266 121 48 chr9 112620573 112620780 -29650664 - MIR SINE MIR -17 245 24 433 320 67 17 chr9 112620798 112620976 -29650468 - MER117 DNA MER1_type -6 191 5 343 239 55 18 chr9 112621624 112621733 -29649711 + HAL1 LINE L1 2267 2379 -128 291 28 0 0 chr9 112622004 112622040 -29649404 + (TG)n Simple_repeat Simple_repeat 1 36 0 739 204 138 0 chr9 112622552 112622704 -29648740 + MER45A DNA AcHobo 1 173 -5 502 255 142 31 chr9 112622870 112623159 -29648285 - MLT1J2 LTR MaLR -156 294 1 207 182 0 0 chr9 112623346 112623379 -29648065 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 246 220 34 76 chr9 112623399 112623517 -29647927 - MER104 DNA Tc2 -63 117 5 24 0 0 0 chr9 112625039 112625063 -29646381 + AT_rich Low_complexity Low_complexity 1 24 0 302 258 47 0 chr9 112625232 112625360 -29646084 - L1ME4a LINE L1 -187 5934 5801 379 360 52 5 chr9 112625861 112626072 -29645372 + L3 LINE CR1 1321 1541 -36 1769 282 53 35 chr9 112626644 112627637 -29643807 - L2 LINE L2 -4 3309 2291 1370 170 0 9 chr9 112627637 112627861 -29643583 - MLT1A1 LTR MaLR 0 365 144 2510 119 24 11 chr9 112628031 112628401 -29643043 + THE1C LTR MaLR 1 375 0 11083 96 17 31 chr9 112628401 112630002 -29641442 + THE1C-int LTR MaLR 1 1579 -1 2111 97 115 12 chr9 112630003 112630343 -29641101 + THE1C LTR MaLR 1 375 0 444 117 29 126 chr9 112630343 112630446 -29640998 - MLT1A1 LTR MaLR -281 93 1 3337 267 80 10 chr9 112630447 112631695 -29639749 - L2 LINE L2 -1020 2294 959 1716 166 23 26 chr9 112632106 112632408 -29639036 - AluJo SINE Alu -9 303 3 231 268 49 0 chr9 112634977 112635059 -29636385 + L3 LINE CR1 1373 1458 -119 263 296 41 10 chr9 112635220 112635318 -29636126 - MIR SINE MIR -157 105 5 477 301 174 43 chr9 112635338 112636514 -29634930 - L2 LINE L2 -431 2883 1555 367 376 79 22 chr9 112636777 112637410 -29634034 - L2 LINE L2 -2202 1112 444 341 222 82 77 chr9 112638893 112639087 -29632357 + L1ME3A LINE L1 5976 6170 0 498 182 131 0 chr9 112639169 112639268 -29632176 - FLAM_A SINE Alu -15 127 16 366 23 0 0 chr9 112640229 112640272 -29631172 + (TG)n Simple_repeat Simple_repeat 2 44 0 242 321 60 0 chr9 112640459 112640593 -29630851 + L1MC/D LINE L1 5709 5850 -1958 22 35 0 0 chr9 112640688 112640717 -29630727 + AT_rich Low_complexity Low_complexity 1 29 0 811 90 0 0 chr9 112641771 112641882 -29629562 + L1PA5 LINE L1 6044 6154 0 240 340 50 0 chr9 112642045 112642145 -29629299 - L2 LINE L2 0 3272 3168 471 35 0 0 chr9 112642761 112642796 -29628648 + (TCCA)n Simple_repeat Simple_repeat 1 92 0 471 35 0 0 chr9 112642796 112642853 -29628591 + (TCCA)n Simple_repeat Simple_repeat 3 59 0 4014 108 19 3 chr9 112642902 112643492 -29627952 - L1PA15 LINE L1 -2 6163 5565 262 352 38 0 chr9 112643903 112644008 -29627436 + MIR SINE MIR 36 144 -118 * 345 320 53 40 chr9 112644006 112644231 -29627213 + L3 LINE CR1 1233 1460 -117 1928 151 3 3 chr9 112644430 112644722 -29626722 - AluJb SINE Alu -20 292 1 7615 32 0 1 chr9 112645679 112646923 -29624521 + L1PA5 LINE L1 4926 6166 0 222 278 0 0 chr9 112647803 112647857 -29623587 + MER5B DNA MER1_type 2 55 -123 2129 114 17 0 chr9 112647867 112648157 -29623287 + AluSg SINE Alu 1 295 -15 245 331 18 65 chr9 112648513 112648682 -29622762 - MIR SINE MIR -6 256 96 299 270 52 52 chr9 112649899 112650014 -29621430 + L2 LINE L2 3141 3255 -17 305 307 131 26 chr9 112651278 112651431 -29620013 - MIR SINE MIR -74 188 20 369 0 0 0 chr9 112651676 112651717 -29619727 + (CA)n Simple_repeat Simple_repeat 2 42 0 599 276 23 45 chr9 112652780 112653001 -29618443 + MIR SINE MIR 45 260 -2 230 209 0 23 chr9 112653335 112653378 -29618066 - MER5A DNA MER1_type -40 149 108 2391 102 0 0 chr9 112653607 112653911 -29617533 + AluSg SINE Alu 1 304 -6 533 226 32 89 chr9 112654176 112654366 -29617078 - MER20B DNA MER1_type -604 179 1 2042 135 0 0 chr9 112654463 112654768 -29616676 + AluSx SINE Alu 1 305 0 198 280 215 0 chr9 112655210 112655317 -29616127 - MIR SINE MIR -14 248 119 459 272 5 43 chr9 112655729 112655913 -29615531 + GA-rich Low_complexity Low_complexity 4 180 0 42197 74 6 5 chr9 112655926 112661677 -29609767 + L1P5 LINE L1 1 5765 -391 214 203 13 63 chr9 112661782 112661861 -29609583 + C-rich Low_complexity Low_complexity 2 76 0 192 228 0 0 chr9 112661874 112661931 -29609513 + C-rich Low_complexity Low_complexity 1 57 0 384 181 23 40 chr9 112662003 112662180 -29609264 + CT-rich Low_complexity Low_complexity 3 176 0 257 306 93 25 chr9 112662433 112662593 -29608851 + MIR SINE MIR 19 185 -59 1090 255 115 61 chr9 112662609 112663159 -29608285 + Charlie7 DNA MER1_type 9 595 -2017 1714 151 56 39 chr9 112663159 112663294 -29608150 + AluJo SINE Alu 1 132 -180 2454 63 3 0 chr9 112663294 112663593 -29607851 + AluSp SINE Alu 10 309 -4 1714 151 56 39 chr9 112663593 112663762 -29607682 + AluJo SINE Alu 132 310 -2 1090 255 115 61 chr9 112663762 112663804 -29607640 + Charlie7 DNA MER1_type 595 633 -1979 416 229 21 73 chr9 112663836 112664028 -29607416 + Charlie7 DNA MER1_type 2430 2611 -1 518 297 55 3 chr9 112664534 112664736 -29606708 - MIR SINE MIR -5 257 44 1170 210 34 19 chr9 112664803 112665065 -29606379 + L1MD3 LINE L1 7730 7995 0 225 0 0 0 chr9 112665363 112665388 -29606056 + (TG)n Simple_repeat Simple_repeat 2 26 0 530 17 0 0 chr9 112665388 112665447 -29605997 - L1P LINE L1 -1205 4941 4883 15832 200 37 19 chr9 112665578 112665857 -29605587 - L1P5 LINE L1 -500 6367 6095 2555 61 3 0 chr9 112665857 112666167 -29605277 - AluY SINE Alu 0 311 1 15832 200 37 19 chr9 112666167 112671966 -29599478 - L1P5 LINE L1 -772 6095 31 1113 210 31 8 chr9 112672028 112672285 -29599159 + L1MC3 LINE L1 5318 5580 -2205 4026 163 72 41 chr9 112672436 112673297 -29598147 + L1MC3 LINE L1 5463 6350 -1435 1844 151 48 45 chr9 112673303 112673635 -29597809 + MER1B DNA MER1_type 7 339 0 573 158 58 72 chr9 112673636 112673775 -29597669 + L1MC3 LINE L1 6344 6480 -1305 1506 173 31 3 chr9 112673786 112674075 -29597369 + L1MC3 LINE L1 7489 7785 0 2714 220 39 41 chr9 112674154 112674907 -29596537 + L1ME2 LINE L1 5423 6332 -2 43054 57 5 2 chr9 112675343 112681331 -29590113 + L1PA5 LINE L1 11 6016 -138 299 326 91 8 chr9 112682283 112682415 -29589029 - L2 LINE L2 0 3313 3171 23 0 0 0 chr9 112683510 112683533 -29587911 + AT_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr9 112683546 112683575 -29587869 + (A)n Simple_repeat Simple_repeat 1 29 0 2172 112 10 16 chr9 112685639 112685943 -29585501 - AluSx SINE Alu -10 302 1 2617 109 11 0 chr9 112686123 112686480 -29584964 - MER46B DNA MER2_type 0 236 1 2820 139 23 21 chr9 112686485 112686918 -29584526 - Tigger2a DNA MER2_type 0 434 1 192 195 39 104 chr9 112686918 112686995 -29584449 + L2 LINE L2 3201 3272 0 3029 189 102 61 chr9 112687044 112688445 -29582999 + L1ME1 LINE L1 4681 6334 0 1873 147 25 11 chr9 112688451 112688736 -29582708 + AluSx SINE Alu 1 289 -23 240 111 0 0 chr9 112688739 112688775 -29582669 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 191 326 0 0 chr9 112690002 112690048 -29581396 - L2 LINE L2 -17 3255 3210 1904 151 43 0 chr9 112690118 112690417 -29581027 - AluJo SINE Alu 0 312 1 333 250 164 0 chr9 112693178 112693282 -29578162 + L1ME3A LINE L1 5526 5646 -524 342 206 0 0 chr9 112693293 112693356 -29578088 - MER5A DNA MER1_type -1 188 126 1156 61 0 0 chr9 112693358 112693490 -29577954 + AluSg1 SINE Alu 3 134 -175 1678 100 0 0 chr9 112693493 112693703 -29577741 + AluSg/x SINE Alu 72 281 -28 405 0 0 0 chr9 112693703 112693748 -29577696 + (CA)n Simple_repeat Simple_repeat 2 46 0 390 328 9 0 chr9 112693749 112693865 -29577579 - MER5A DNA MER1_type -59 130 14 728 264 73 11 chr9 112693865 112694126 -29577318 + L1ME3A LINE L1 5690 5966 -204 536 239 86 41 chr9 112694176 112694373 -29577071 + L1MCc LINE L1 264 469 -5954 249 318 27 0 chr9 112694642 112694752 -29576692 + L1MCc LINE L1 657 769 -5654 687 227 18 39 chr9 112694754 112695250 -29576194 + L1M4 LINE L1 4048 4671 -1475 * 802 209 56 74 chr9 112695233 112695575 -29575869 + L1MC5 LINE L1 6931 7256 -719 376 193 21 121 chr9 112695677 112695817 -29575627 + L1MC5 LINE L1 7272 7397 -564 2271 98 3 3 chr9 112695817 112696114 -29575330 + AluSg SINE Alu 1 297 -13 2839 174 8 13 chr9 112696129 112696607 -29574837 + MLT2B2 LTR ERVL 1 476 -39 783 261 102 21 chr9 112696943 112697477 -29573967 + L1ME3 LINE L1 4406 5019 -1127 2894 129 31 7 chr9 112697489 112697907 -29573537 - MSTA LTR MaLR 0 428 1 2299 101 0 0 chr9 112697989 112698277 -29573167 + AluSx SINE Alu 1 288 -24 21 36 0 0 chr9 112698277 112698305 -29573139 + AT_rich Low_complexity Low_complexity 1 28 0 793 266 138 32 chr9 112698314 112698989 -29572455 + L1ME3 LINE L1 5211 5952 -210 26 88 0 0 chr9 112698993 112699061 -29572383 + AT_rich Low_complexity Low_complexity 1 68 0 1218 218 89 62 chr9 112699333 112699737 -29571707 + L1ME LINE L1 142 556 -5649 493 193 72 101 chr9 112699739 112699946 -29571498 + MLT1H1 LTR MaLR 47 247 -343 752 229 36 26 chr9 112699959 112700151 -29571293 + MLT1H1 LTR MaLR 360 553 -2 198 0 0 0 chr9 112700173 112700195 -29571249 + (A)n Simple_repeat Simple_repeat 1 22 0 755 311 115 6 chr9 112702415 112702762 -29568682 + L2 LINE L2 2584 2968 -346 199 271 14 14 chr9 112703157 112703227 -29568217 - L2 LINE L2 -463 2851 2782 361 360 119 22 chr9 112704722 112705041 -29566403 - L2 LINE L2 -559 2755 2406 354 333 48 16 chr9 112705121 112705247 -29566197 - L2 LINE L2 0 3272 3143 347 244 81 16 chr9 112705605 112705728 -29565716 + L1ME LINE L1 758 888 -5317 404 193 23 47 chr9 112705762 112705915 -29565529 + HsTC2 DNA Tc2 29 1898 0 309 325 12 8 chr9 112706207 112706453 -29564991 + L1ME LINE L1 1256 1502 -4894 404 255 39 0 chr9 112706485 112706587 -29564857 - MIR SINE MIR -69 193 88 1595 173 29 2 chr9 112706712 112707129 -29564315 + L1M3 LINE L1 5004 5430 -745 953 218 30 5 chr9 112707135 112707332 -29564112 + MER82 DNA MER2_type 425 626 -27 605 282 25 39 chr9 112707344 112707628 -29563816 + L1ME LINE L1 63 342 -5728 200 303 105 0 chr9 112708341 112708417 -29563027 - L2 LINE L2 -52 3220 3137 414 217 113 17 chr9 112708503 112708618 -29562826 - MIR SINE MIR -74 188 63 338 186 43 14 chr9 112708827 112708897 -29562547 - L2 LINE L2 -1 3312 3241 1996 116 0 55 chr9 112709449 112709760 -29561684 - AluSx SINE Alu -17 295 2 289 169 0 17 chr9 112709785 112709844 -29561600 + LTR67 LTR ERVL 486 543 -14 615 276 52 16 chr9 112709860 112710052 -29561392 + MIR SINE MIR 45 243 -19 2384 77 26 6 chr9 112712239 112712578 -29558866 - L1PA10 LINE L1 -41 6127 5782 338 263 0 0 chr9 112712722 112712817 -29558627 + (TA)n Simple_repeat Simple_repeat 2 96 0 963 178 23 11 chr9 112712818 112712992 -29558452 - AluJo SINE Alu -17 295 120 1648 196 27 10 chr9 112713409 112713705 -29557739 + AluJo SINE Alu 1 301 -11 1205 160 10 0 chr9 112713908 112714102 -29557342 + AluJo SINE Alu 84 279 -33 1724 175 10 17 chr9 112714237 112714529 -29556915 + AluJo SINE Alu 1 290 -22 1069 264 144 15 chr9 112714587 112715328 -29556116 + L2 LINE L2 2412 3245 -68 230 140 0 20 chr9 112715680 112715714 -29555730 + (TA)n Simple_repeat Simple_repeat 2 36 -14 1900 155 23 40 chr9 112715714 112716068 -29555376 - MER7A DNA MER2_type 0 346 1 230 140 0 20 chr9 112716068 112716083 -29555361 + (TA)n Simple_repeat Simple_repeat 36 50 0 296 203 12 23 chr9 112716084 112716197 -29555247 - L1ME LINE L1 -302 5819 5708 2363 110 3 0 chr9 112716261 112716571 -29554873 + AluSp SINE Alu 1 311 -2 195 196 39 0 chr9 112717625 112717676 -29553768 - MIR SINE MIR -68 194 142 979 112 230 0 chr9 112717847 112717925 -29553519 - MER30 DNA MER1_type 0 230 171 2300 102 0 0 chr9 112717925 112718220 -29553224 - AluSg SINE Alu -15 295 1 979 112 230 0 chr9 112718220 112718328 -29553116 - MER30 DNA MER1_type -59 171 1 733 179 30 0 chr9 112718609 112718743 -29552701 - MER5A DNA MER1_type -51 138 1 617 262 107 9 chr9 112720065 112720290 -29551154 - MIR SINE MIR -3 259 13 1348 230 97 54 chr9 112720318 112720581 -29550863 - L1ME3A LINE L1 -11 6159 5909 2281 100 0 3 chr9 112720581 112720881 -29550563 - AluSx SINE Alu -9 303 5 1348 230 97 54 chr9 112720881 112720990 -29550454 - L1ME3A LINE L1 -261 5909 5806 1809 121 39 70 chr9 112720990 112721377 -29550067 - THE1C LTR MaLR 0 375 1 1348 230 97 54 chr9 112721377 112721559 -29549885 - L1ME3A LINE L1 -364 5806 5580 856 243 48 51 chr9 112721605 112721959 -29549485 + MLT1B LTR MaLR 5 357 -33 1368 144 159 42 chr9 112722918 112723182 -29548262 - AluJo SINE Alu -17 295 1 246 327 20 40 chr9 112724205 112724306 -29547138 + MIR SINE MIR 114 212 -50 180 0 0 0 chr9 112728283 112728303 -29543141 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 273 304 65 0 chr9 112729150 112729242 -29542202 + MIR SINE MIR 34 131 -131 2517 68 3 0 chr9 112729245 112729553 -29541891 - AluY SINE Alu -2 309 1 1575 251 76 20 chr9 112729689 112730178 -29541266 + L2 LINE L2 2221 2736 -578 809 205 108 4 chr9 112730188 112730517 -29540927 + MSTD LTR MaLR 4 396 0 802 314 47 29 chr9 112730527 112730955 -29540489 + L2 LINE L2 2738 3173 -140 663 153 0 0 chr9 112730959 112731057 -29540387 - FLAM_A SINE Alu -16 126 29 543 313 27 0 chr9 112731070 112731220 -29540224 + L2 LINE L2 3159 3312 -1 445 298 62 71 chr9 112731672 112732008 -29539436 + L3 LINE CR1 1245 1577 0 1118 212 77 5 chr9 112732281 112732503 -29538941 - MER8 DNA MER2_type 0 239 2 181 346 37 56 chr9 112732747 112732854 -29538590 - L2 LINE L2 -8 3264 3160 2245 114 141 5 chr9 112732872 112733249 -29538195 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr9 112733690 112733711 -29537733 + AT_rich Low_complexity Low_complexity 1 21 0 864 225 273 8 chr9 112734163 112734565 -29536879 + L2 LINE L2 2495 3016 -297 308 189 0 0 chr9 112734665 112734718 -29536726 + AluJ/FRAM SINE Alu 230 282 -20 222 340 60 10 chr9 112736142 112736242 -29535202 - L2 LINE L2 -43 3229 3125 209 342 0 13 chr9 112736717 112736796 -29534648 - L2 LINE L2 -210 3062 2985 208 314 118 9 chr9 112737111 112737331 -29534113 - L2 LINE L2 -1152 2162 1919 253 297 242 0 chr9 112738135 112738263 -29533181 - MIR SINE MIR -58 204 46 662 153 7 0 chr9 112738473 112738617 -29532827 + (TG)n Simple_repeat Simple_repeat 1 145 0 257 240 40 0 chr9 112739182 112739257 -29532187 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 189 74 0 0 chr9 112739509 112739536 -29531908 + (CA)n Simple_repeat Simple_repeat 1 27 0 3377 221 55 53 chr9 112739555 112740745 -29530699 - L1MC5 LINE L1 -49 7912 6717 432 0 0 0 chr9 112740745 112740793 -29530651 + (TG)n Simple_repeat Simple_repeat 1 48 0 3377 221 55 53 chr9 112740793 112740875 -29530569 - L1MC5 LINE L1 -1244 6717 6637 217 175 0 35 chr9 112740884 112740914 -29530530 + GA-rich Low_complexity Low_complexity 2 31 -25 1144 190 153 43 chr9 112740914 112741240 -29530204 + MLT1A1 LTR MaLR 2 363 -2 217 175 0 35 chr9 112741240 112741266 -29530178 + GA-rich Low_complexity Low_complexity 31 56 0 496 281 79 119 chr9 112741274 112741524 -29529920 - L1MC4a LINE L1 -1223 6585 6326 1455 130 0 5 chr9 112741524 112741731 -29529713 - AluSg/x SINE Alu -10 302 97 496 281 79 119 chr9 112741731 112742027 -29529417 - L1MC4a LINE L1 -1482 6326 6061 33 25 0 0 chr9 112742035 112742075 -29529369 + AT_rich Low_complexity Low_complexity 1 40 0 245 250 0 0 chr9 112742115 112742179 -29529265 - L1MC4a LINE L1 -1915 5893 5830 4177 204 28 50 chr9 112742547 112743881 -29527563 + L1MCb LINE L1 3 1301 -4956 2237 113 7 0 chr9 112743881 112744182 -29527262 + AluSx SINE Alu 1 303 -9 4177 204 28 50 chr9 112744182 112744286 -29527158 + L1MCb LINE L1 1301 1406 -4851 218 213 21 0 chr9 112744866 112744913 -29526531 - MIR SINE MIR -111 151 104 2229 139 78 24 chr9 112745268 112745678 -29525766 - Tigger2a DNA MER2_type 0 434 3 431 267 95 35 chr9 112745978 112746263 -29525181 + HAL1b LINE L1 634 935 -413 497 217 92 20 chr9 112746274 112746426 -29525018 + HAL1b LINE L1 986 1148 -200 191 170 21 0 chr9 112746452 112746499 -29524945 + CT-rich Low_complexity Low_complexity 4 51 0 245 242 0 30 chr9 112746507 112746573 -29524871 + (TCCA)n Simple_repeat Simple_repeat 3 66 0 365 244 31 0 chr9 112746891 112747018 -29524426 + L1MC4a LINE L1 4518 4648 -1498 323 272 81 42 chr9 112747025 112747286 -29524158 + L1MC4a LINE L1 5611 5881 -1927 238 229 0 0 chr9 112747361 112747409 -29524035 - MIR SINE MIR -7 255 208 643 299 63 19 chr9 112747748 112748016 -29523428 - MLT1K LTR MaLR -4 584 305 3046 134 25 2 chr9 112748311 112748832 -29522612 - Tigger3(Golem) DNA MER2_type -2 3027 2495 1124 62 0 0 chr9 112749019 112749165 -29522279 - L1PA5 LINE L1 0 6154 6009 194 340 123 9 chr9 112749446 112749552 -29521892 + MIR SINE MIR 117 234 -28 190 303 0 53 chr9 112749906 112749982 -29521462 - L2 LINE L2 -54 3218 3147 980 223 56 48 chr9 112750142 112750479 -29520965 + MLT2C1 LTR ERVL 1 340 -57 180 152 0 0 chr9 112750488 112750521 -29520923 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 61 0 0 chr9 112750567 112750600 -29520844 + MLT2F LTR ERVL 631 663 0 411 335 49 65 chr9 112750784 112751029 -29520415 + MIR SINE MIR 12 252 -10 285 315 56 37 chr9 112751722 112751884 -29519560 + MIR SINE MIR 53 217 -45 230 330 43 35 chr9 112752254 112752369 -29519075 - MIR SINE MIR -144 118 3 283 280 28 28 chr9 112752385 112752492 -29518952 + L1P LINE L1 5318 5424 -742 878 232 21 11 chr9 112752504 112752694 -29518750 - MER58A DNA MER1_type -32 192 1 23 33 0 0 chr9 112752703 112752733 -29518711 + AT_rich Low_complexity Low_complexity 1 30 0 210 195 39 0 chr9 112753102 112753179 -29518265 + GA-rich Low_complexity Low_complexity 3 82 0 706 284 31 5 chr9 112753459 112753653 -29517791 + MIR SINE MIR 46 244 -18 2014 91 4 0 chr9 112753699 112753952 -29517492 + AluSx SINE Alu 1 254 -58 499 269 107 0 chr9 112754079 112754228 -29517216 + MIR SINE MIR 21 185 -77 825 291 90 44 chr9 112754690 112755102 -29516342 - L2 LINE L2 -1 3312 2882 442 309 39 17 chr9 112755381 112755562 -29515882 - MIR SINE MIR -39 223 39 607 76 13 0 chr9 112756608 112756687 -29514757 - THE1C LTR MaLR -295 80 1 247 258 83 144 chr9 112756924 112757153 -29514291 - MLT1-int LTR MaLR -129 1242 1028 1944 221 20 67 chr9 112757985 112758496 -29512948 + MLT1D LTR MaLR 1 487 -18 2107 144 0 6 chr9 112758664 112758977 -29512467 - THE1B LTR MaLR 0 364 54 335 176 16 192 chr9 112759100 112759282 -29512162 - Charlie8 DNA MER1_type -2182 235 86 833 286 56 82 chr9 112759882 112760343 -29511101 + LTR67 LTR ERVL 109 557 0 706 194 145 54 chr9 112760481 112760667 -29510777 + MIR SINE MIR 51 253 -9 245 254 0 16 chr9 112761014 112761077 -29510367 - L2 LINE L2 -56 3257 3196 34 65 0 0 chr9 112761084 112761146 -29510298 + AT_rich Low_complexity Low_complexity 1 62 0 834 138 31 0 chr9 112761384 112761514 -29509930 + THE1C LTR MaLR 242 375 0 1955 162 20 35 chr9 112761514 112761549 -29509895 + LTR69 LTR ERVL 246 280 -308 198 0 0 0 chr9 112761549 112761571 -29509873 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1955 162 20 35 chr9 112761571 112761881 -29509563 + LTR69 LTR ERVL 280 586 -2 292 293 45 27 chr9 112762901 112763113 -29508331 + L1ME LINE L1 5656 5875 -287 209 353 90 8 chr9 112764730 112764852 -29506592 - MIR SINE MIR -100 162 31 180 97 0 0 chr9 112764896 112764927 -29506517 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 185 311 94 57 chr9 112765197 112765303 -29506141 + L2 LINE L2 3199 3308 -5 2279 150 35 11 chr9 112766225 112766591 -29504853 - THE1C LTR MaLR 0 375 1 27 29 0 0 chr9 112766593 112766627 -29504817 + AT_rich Low_complexity Low_complexity 1 34 0 2632 179 19 2 chr9 112766815 112767234 -29504210 - MSTB LTR MaLR 0 426 1 10037 155 35 14 chr9 112767234 112768394 -29503050 - MSTB-int LTR MaLR 0 1651 446 1922 155 0 29 chr9 112768394 112768703 -29502741 + AluSx SINE Alu 1 300 -12 10037 155 35 14 chr9 112768703 112769159 -29502285 - MSTB-int LTR MaLR -1205 446 1 2842 149 17 7 chr9 112769159 112769581 -29501863 - MSTB LTR MaLR 0 426 1 2377 82 7 3 chr9 112769812 112770115 -29501329 + AluSq SINE Alu 1 304 -9 333 259 129 20 chr9 112770359 112770560 -29500884 + L1 LINE L1 2895 3117 -3029 3970 162 43 4 chr9 112770730 112771457 -29499987 + L1 LINE L1 4043 4797 -1349 2668 23 3 3 chr9 112771457 112771764 -29499680 + AluY SINE Alu 1 307 -4 21 0 0 0 chr9 112771937 112771958 -29499486 + AT_rich Low_complexity Low_complexity 1 21 0 334 249 75 70 chr9 112772026 112772239 -29499205 + L1ME LINE L1 5391 5604 -517 208 244 0 0 chr9 112773316 112773361 -29498083 + T-rich Low_complexity Low_complexity 5 49 0 522 271 47 59 chr9 112773672 112773842 -29497602 + MIR3 SINE MIR 36 203 -5 288 255 0 20 chr9 112774396 112774494 -29496950 - L1ME4a LINE L1 -64 6057 5962 515 324 82 55 chr9 112774729 112775134 -29496310 - L2 LINE L2 -90 3182 2750 1597 174 43 13 chr9 112775134 112775433 -29496011 - AluJb SINE Alu -4 308 1 515 324 82 55 chr9 112775433 112775554 -29495890 - L2 LINE L2 -522 2750 2634 201 39 0 0 chr9 112776048 112776074 -29495370 + (TG)n Simple_repeat Simple_repeat 1 26 0 682 238 20 20 chr9 112776075 112776226 -29495218 - AluJo SINE Alu -38 274 124 1733 159 24 7 chr9 112776399 112776688 -29494756 - AluSg SINE Alu -16 294 1 445 300 14 7 chr9 112776689 112776829 -29494615 - L2 LINE L2 -10 3303 3163 473 230 26 18 chr9 112776876 112776989 -29494455 + L2 LINE L2 3200 3313 0 2203 91 21 0 chr9 112777554 112777840 -29493604 - AluSg SINE Alu -18 292 1 263 320 131 60 chr9 112777959 112778372 -29493072 + L2 LINE L2 2826 3267 -5 520 231 100 15 chr9 112778433 112778563 -29492881 + MIR SINE MIR 49 189 -73 766 203 31 6 chr9 112779186 112779349 -29492095 + MIR SINE MIR 58 224 -38 1372 132 30 51 chr9 112779731 112779966 -29491478 - MER30 DNA MER1_type 0 230 1 507 153 106 0 chr9 112780106 112780191 -29491253 + FLAM SINE Alu 38 131 -12 312 315 81 0 chr9 112780367 112780478 -29490966 - L2 LINE L2 -3 3310 3191 864 266 106 4 chr9 112780518 112780774 -29490670 + L2 LINE L2 3032 3313 0 210 292 100 46 chr9 112780817 112781057 -29490387 - L2 LINE L2 -248 3065 2813 745 121 0 94 chr9 112781274 112781423 -29490021 - AluSp/q SINE Alu 0 313 179 294 308 189 12 chr9 112782189 112782358 -29489086 - MIR3 SINE MIR -5 203 5 290 264 147 39 chr9 112782586 112782715 -29488729 + MIR SINE MIR 47 189 -73 1233 303 72 27 chr9 112782905 112783627 -29487817 - L2 LINE L2 -3 3310 2563 212 370 0 0 chr9 112784501 112784574 -29486870 + L2 LINE L2 3157 3229 -43 1118 163 99 15 chr9 112784677 112784879 -29486565 + MER20 DNA MER1_type 1 219 0 235 280 34 121 chr9 112784891 112785098 -29486346 + MIR SINE MIR 22 210 -52 215 295 114 29 chr9 112786517 112786622 -29484822 - MIR SINE MIR -146 116 3 9166 74 2 1 chr9 112787646 112789548 -29481896 - L1PA7 LINE L1 -1 6153 4234 5610 122 24 7 chr9 112790196 112791038 -29480406 - L1MA6 LINE L1 0 6300 5445 7416 130 28 32 chr9 112791048 112792284 -29479160 + L1P LINE L1 11 1242 -4904 1826 96 11 4 chr9 112792384 112792644 -29478800 + THE1C-int LTR MaLR 1319 1580 0 2711 122 3 8 chr9 112792644 112793021 -29478423 + THE1C LTR MaLR 1 375 0 297 277 39 62 chr9 112794098 112794228 -29477216 - MIR SINE MIR -88 174 48 254 298 199 7 chr9 112794260 112794401 -29477043 + MIR SINE MIR 27 194 -68 821 229 24 29 chr9 112794425 112794635 -29476809 + MIR SINE MIR 11 219 -43 541 257 76 68 chr9 112794802 112795051 -29476393 - MLT1K LTR MaLR -43 545 295 2094 126 80 37 chr9 112795072 112795421 -29476023 - THE1B LTR MaLR 0 364 1 223 259 0 0 chr9 112795709 112795763 -29475681 + MIR3 SINE MIR 143 196 -12 267 31 0 0 chr9 112796859 112796891 -29474553 + (TA)n Simple_repeat Simple_repeat 2 33 0 211 212 96 123 chr9 112797178 112797324 -29474120 + MIR SINE MIR 103 244 -18 1716 191 82 9 chr9 112797801 112798141 -29473303 - MLT1A1 LTR MaLR 0 365 1 308 297 104 25 chr9 112798991 112799193 -29472251 - MIR SINE MIR -12 250 33 270 0 0 0 chr9 112799265 112799295 -29472149 + (TC)n Simple_repeat Simple_repeat 1 30 0 183 129 0 0 chr9 112799947 112799978 -29471466 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1793 161 27 6 chr9 112800135 112800614 -29470830 - L1P4 LINE L1 -600 5566 5080 3322 145 0 8 chr9 112800614 112801103 -29470341 + L1PA16 LINE L1 5670 6155 -11 928 293 129 41 chr9 112801174 112802481 -29468963 + L1 LINE L1 3599 5020 -1126 2778 13 0 0 chr9 112802663 112802961 -29468483 + L1PA2 LINE L1 5854 6151 -4 231 294 128 0 chr9 112803110 112803212 -29468232 - L2 LINE L2 0 3313 3199 19980 122 19 21 chr9 112803229 112806361 -29465083 + L1P LINE L1 11 3137 -3009 226 141 0 109 chr9 112806644 112806708 -29464736 + Alu SINE Alu 244 300 0 43692 39 22 2 chr9 112806713 112812733 -29458711 + L1PA7 LINE L1 2 6146 -8 23 0 0 0 chr9 112812734 112812757 -29458687 + AT_rich Low_complexity Low_complexity 1 23 0 1954 132 40 10 chr9 112813072 112813375 -29458069 - AluJb SINE Alu 0 312 1 436 213 115 8 chr9 112815626 112815748 -29455696 - L1ME4a LINE L1 0 6121 5987 268 312 251 0 chr9 112815887 112816150 -29455294 - L1ME4a LINE L1 -233 5888 5560 1840 135 30 76 chr9 112817977 112818374 -29453070 + MER67C LTR ERV1 1 403 -242 915 263 55 99 chr9 112818538 112819062 -29452382 - MER34 LTR ERV1 -41 501 1 393 248 115 0 chr9 112819324 112819437 -29452007 + MIR SINE MIR 108 233 -29 200 309 99 12 chr9 112819476 112819557 -29451887 + MIR SINE MIR 19 106 -102 2221 235 60 25 chr9 112819628 112820237 -29451207 + MLT1E2 LTR MaLR 3 626 0 15572 63 9 1 chr9 112820349 112823039 -29448405 + L1PA6 LINE L1 3370 6076 -78 270 178 140 75 chr9 112823684 112823791 -29447653 + MER103 DNA DNA 10 123 -43 2133 121 7 7 chr9 112823975 112824282 -29447162 - AluJb SINE Alu -5 307 1 256 271 167 0 chr9 112824617 112824713 -29446731 - L2 LINE L2 -21 3251 3140 297 294 32 16 chr9 112824848 112824974 -29446470 - MIR SINE MIR -114 148 21 849 170 0 22 chr9 112825298 112825433 -29446011 + FLAM_A SINE Alu 2 133 0 780 203 0 15 chr9 112826425 112826558 -29444886 - FLAM_A SINE Alu -2 131 1 313 271 179 46 chr9 112826560 112826840 -29444604 - L2 LINE L2 -2 3311 2995 239 346 92 0 chr9 112827267 112827397 -29444047 + MIR SINE MIR 48 189 -73 1174 239 112 61 chr9 112827755 112828173 -29443271 + MLT1D LTR MaLR 1 447 -58 2332 78 0 0 chr9 112828173 112828466 -29442978 + AluY SINE Alu 5 297 -14 1174 239 112 61 chr9 112828466 112828519 -29442925 + MLT1D LTR MaLR 447 496 -9 427 190 74 8 chr9 112828930 112829051 -29442393 - MIR3 SINE MIR -53 155 27 324 179 89 0 chr9 112829310 112829366 -29442078 + MER58B DNA MER1_type 197 257 -84 1176 185 113 5 chr9 112829370 112829592 -29441852 + AluJo SINE Alu 1 246 -66 325 256 100 0 chr9 112829632 112829722 -29441722 + MER58B DNA MER1_type 243 341 0 241 320 13 0 chr9 112829760 112829835 -29441609 + GA-rich Low_complexity Low_complexity 3 78 0 2331 100 0 25 chr9 112830175 112830496 -29440948 + AluSq SINE Alu 1 313 0 200 35 35 0 chr9 112830502 112830531 -29440913 + (GA)n Simple_repeat Simple_repeat 1 30 0 445 240 97 80 chr9 112831562 112831605 -29439839 + MER5B DNA MER1_type 1 42 -136 2395 60 0 0 chr9 112831605 112831937 -29439507 + AluY SINE Alu 1 311 0 445 240 97 80 chr9 112831937 112832068 -29439376 + MER5B DNA MER1_type 42 178 0 207 200 0 0 chr9 112832738 112832778 -29438666 + MIR SINE MIR 4 43 -219 22 0 0 0 chr9 112832786 112832808 -29438636 + AT_rich Low_complexity Low_complexity 1 22 0 3994 138 45 9 chr9 112832813 112833763 -29437681 - L1PA16 LINE L1 0 6154 5133 741 237 27 5 chr9 112833773 112833959 -29437485 + MIR SINE MIR 53 242 -20 437 266 120 40 chr9 112834103 112834525 -29436919 - L1MC4a LINE L1 -234 5887 5476 283 262 50 91 chr9 112835245 112835466 -29435978 - L1ME4a LINE L1 -29 6092 5881 2160 118 7 3 chr9 112835479 112835783 -29435661 - AluSc SINE Alu -2 307 3 1914 157 4 0 chr9 112835809 112836090 -29435354 - AluJb SINE Alu -30 282 1 315 290 37 19 chr9 112836138 112836245 -29435199 - L2 LINE L2 -2 3311 3203 458 324 49 40 chr9 112836833 112837160 -29434284 + L1ME4a LINE L1 5562 5891 -230 516 258 80 44 chr9 112838383 112838608 -29432836 + MIR SINE MIR 30 262 0 841 201 87 7 chr9 112838871 112839064 -29432380 + MIR SINE MIR 58 262 0 526 293 6 12 chr9 112839125 112839292 -29432152 - MIR3 SINE MIR -6 202 37 2008 149 23 3 chr9 112839946 112840289 -29431155 + L1MA4A LINE L1 5950 6299 -4 207 364 131 10 chr9 112842704 112842803 -29428641 - L2 LINE L2 -36 3236 3126 825 290 63 71 chr9 112842921 112843445 -29427999 - MLT1K LTR MaLR 0 588 69 358 294 109 85 chr9 112843567 112844263 -29427181 - L2 LINE L2 -357 2957 2245 1788 148 69 0 chr9 112844515 112844792 -29426652 + AluSx SINE Alu 1 296 -16 1312 195 19 0 chr9 112845283 112845498 -29425946 + MER58A DNA MER1_type 5 223 -1 262 373 135 29 chr9 112845521 112845796 -29425648 + L2 LINE L2 2685 2986 -327 2257 123 0 7 chr9 112845814 112846124 -29425320 - AluSx SINE Alu -4 308 1 859 278 8 26 chr9 112847373 112847607 -29423837 - MIR SINE MIR -17 245 16 462 18 0 0 chr9 112847888 112847943 -29423501 + (TG)n Simple_repeat Simple_repeat 2 56 0 2170 82 0 34 chr9 112850047 112850338 -29421106 - AluY SINE Alu -7 304 24 483 48 0 0 chr9 112850357 112850419 -29421025 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 396 265 185 33 chr9 112851219 112851430 -29420014 - MIR SINE MIR 0 262 20 368 346 65 41 chr9 112852623 112852961 -29418483 - L1 LINE L1 -1127 5019 4674 21 36 0 0 chr9 112852975 112853003 -29418441 + AT_rich Low_complexity Low_complexity 1 28 0 1907 101 105 0 chr9 112853923 112854181 -29417263 + AluSx SINE Alu 1 285 -27 495 0 0 0 chr9 112854185 112854240 -29417204 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 803 156 39 0 chr9 112854602 112854730 -29416714 + AluJo/FLAM SINE Alu 1 133 -169 241 349 0 12 chr9 112854763 112854846 -29416598 + MIR3 SINE MIR 122 203 -5 309 260 15 3 chr9 112855127 112855257 -29416187 + MIR SINE MIR 48 220 -42 590 310 158 48 chr9 112855294 112856210 -29415234 + L2 LINE L2 2188 3237 -35 605 265 11 32 chr9 112856353 112856538 -29414906 + MER5A DNA MER1_type 3 183 -6 431 100 33 0 chr9 112856744 112856804 -29414640 + AluSq/x SINE Alu 62 123 -190 27 0 0 0 chr9 112856882 112856909 -29414535 + AT_rich Low_complexity Low_complexity 1 27 0 2388 101 0 3 chr9 112857214 112857522 -29413922 - AluSx SINE Alu -5 307 1 747 217 72 10 chr9 112858336 112858543 -29412901 - MIR SINE MIR 0 262 43 2116 127 3 0 chr9 112859488 112859779 -29411665 - AluSp SINE Alu -21 292 1 1996 137 7 3 chr9 112860442 112860734 -29410710 - AluJb SINE Alu -15 297 5 258 279 213 0 chr9 112860843 112861101 -29410343 + L1MC5 LINE L1 7613 7925 -36 2698 83 6 0 chr9 112861619 112861979 -29409465 - L1PA13 LINE L1 0 6163 5802 2551 75 0 3 chr9 112862617 112862922 -29408522 - AluSc SINE Alu -4 305 2 1582 196 3 29 chr9 112863373 112863689 -29407755 - AluJo SINE Alu -4 308 1 2143 132 3 0 chr9 112864920 112865223 -29406221 + AluSx SINE Alu 1 304 -8 192 97 0 0 chr9 112866033 112866064 -29405380 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 321 338 19 32 chr9 112866091 112866248 -29405196 + MER5A DNA MER1_type 35 189 0 396 274 105 0 chr9 112867309 112867462 -29403982 + MIR3 SINE MIR 39 207 -1 189 0 0 0 chr9 112868367 112868388 -29403056 + (ATG)n Simple_repeat Simple_repeat 3 23 0 486 310 28 19 chr9 112868924 112869140 -29402304 + MIR SINE MIR 2 219 -43 2419 97 0 3 chr9 112869167 112869476 -29401968 + AluSq SINE Alu 1 308 -5 1113 211 0 18 chr9 112869516 112869739 -29401705 - MER20 DNA MER1_type 0 219 1 341 316 67 61 chr9 112870012 112870309 -29401135 - L3 LINE CR1 -1 1576 1278 359 270 203 0 chr9 112871910 112872073 -29399371 - MER91A DNA MER1_type 0 196 1 1773 152 3 24 chr9 112872242 112872531 -29398913 - AluSx SINE Alu -29 283 1 235 284 105 21 chr9 112872772 112872813 -29398631 + L2 LINE L2 3196 3232 -81 1322 220 186 28 chr9 112872813 112873249 -29398195 - MLT1D LTR MaLR 0 505 1 235 284 105 21 chr9 112873249 112873302 -29398142 + L2 LINE L2 3232 3298 -15 544 305 47 35 chr9 112873386 112873642 -29397802 + MIR SINE MIR 4 262 0 1816 137 7 15 chr9 112874178 112874473 -29396971 - AluSx SINE Alu 0 308 16 1211 137 104 0 chr9 112874522 112874734 -29396710 + L1PA11 LINE L1 5939 6172 -2 195 42 0 0 chr9 112874765 112874789 -29396655 + (A)n Simple_repeat Simple_repeat 1 24 0 2306 104 0 7 chr9 112874795 112875103 -29396341 + AluSx SINE Alu 1 306 -6 467 208 42 8 chr9 112875179 112875299 -29396145 + MER5C DNA MER1_type 1 124 -200 819 127 0 70 chr9 112875514 112875656 -29395788 - FLAM_C SINE Alu -1 132 1 2704 86 24 14 chr9 112876444 112876653 -29394791 - THE1C LTR MaLR 0 375 159 2342 103 0 3 chr9 112876653 112876953 -29394491 + AluSq SINE Alu 12 310 -3 2704 86 24 14 chr9 112876953 112877114 -29394330 - THE1C LTR MaLR -216 159 1 2064 142 0 0 chr9 112877269 112877558 -29393886 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr9 112877558 112877580 -29393864 + AT_rich Low_complexity Low_complexity 1 22 0 543 279 58 0 chr9 112877886 112878040 -29393404 + MIR SINE MIR 65 227 -35 2300 98 0 0 chr9 112878040 112878335 -29393109 + AluSg1 SINE Alu 1 295 -14 192 77 0 0 chr9 112878868 112878894 -29392550 + (TTG)n Simple_repeat Simple_repeat 2 27 0 248 321 14 29 chr9 112879540 112879680 -29391764 + L2 LINE L2 1879 2016 -1298 806 364 90 21 chr9 112879721 112880766 -29390678 + L2 LINE L2 2115 3234 -38 515 315 113 10 chr9 112882835 112883038 -29388406 + MIR SINE MIR 20 243 -19 257 188 65 109 chr9 112884850 112884988 -29386456 - MIR SINE MIR -7 255 124 845 150 0 0 chr9 112886584 112886711 -29384733 + FLAM_C SINE Alu 1 127 -16 2174 110 0 3 chr9 112886958 112887240 -29384204 - AluSx SINE Alu -30 282 2 251 296 80 0 chr9 112888819 112888907 -29382537 - L2 LINE L2 -17 3296 3202 556 318 55 39 chr9 112889108 112889363 -29382081 + MIR SINE MIR 1 259 -3 270 0 0 0 chr9 112889551 112889581 -29381863 + (CA)n Simple_repeat Simple_repeat 1 30 0 222 118 0 0 chr9 112889890 112889924 -29381520 + (CA)n Simple_repeat Simple_repeat 2 35 0 214 302 0 0 chr9 112890186 112890249 -29381195 - L2 LINE L2 -2 3270 3208 311 260 47 60 chr9 112890425 112890575 -29380869 - L2 LINE L2 -191 3081 2934 438 299 113 51 chr9 112890655 112891221 -29380223 - L2 LINE L2 -559 2755 2155 190 318 128 29 chr9 112891914 112892156 -29379288 - L2 LINE L2 -1569 1745 1480 211 307 123 0 chr9 112892754 112892868 -29378576 - L2 LINE L2 -1 3312 3185 425 102 10 31 chr9 112893675 112893773 -29377671 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 268 277 79 10 chr9 112894151 112894252 -29377192 + L2 LINE L2 1814 1921 -1393 1029 235 106 102 chr9 112894693 112894766 -29376678 - MLT1J LTR MaLR 0 511 440 2654 53 0 0 chr9 112894766 112895070 -29376374 - AluY SINE Alu -7 304 1 1029 235 106 102 chr9 112895070 112895498 -29375946 - MLT1J LTR MaLR -71 440 8 268 354 61 32 chr9 112896134 112896411 -29375033 + L3 LINE CR1 1286 1570 -7 566 323 48 0 chr9 112896493 112896722 -29374722 + MIR SINE MIR 8 247 -15 214 302 0 0 chr9 112896731 112896817 -29374627 + (TTA)n Simple_repeat Simple_repeat 2 87 0 1978 122 0 0 chr9 112896965 112897228 -29374216 - AluSx SINE Alu -19 293 31 223 300 80 0 chr9 112897577 112897677 -29373767 + L2 LINE L2 2928 3035 -237 674 257 43 104 chr9 112897760 112897906 -29373538 - MLT1J LTR MaLR -95 416 263 2045 194 29 52 chr9 112897906 112898422 -29373022 + MLT1D LTR MaLR 1 504 -1 674 257 43 104 chr9 112898422 112898494 -29372950 - MLT1J LTR MaLR -248 263 188 1985 156 3 19 chr9 112898494 112898808 -29372636 - AluJo SINE Alu -3 309 1 674 257 43 104 chr9 112898808 112899031 -29372413 - MLT1J LTR MaLR -323 188 1 381 333 39 13 chr9 112899096 112899252 -29372192 + L2 LINE L2 3110 3269 -3 257 238 50 25 chr9 112900042 112900122 -29371322 + L1M3f LINE L1 230 311 -5017 237 247 65 0 chr9 112900442 112900519 -29370925 - L1ME4a LINE L1 -76 6045 5964 188 185 19 0 chr9 112900631 112900685 -29370759 + (TA)n Simple_repeat Simple_repeat 1 55 0 309 151 0 0 chr9 112900736 112900789 -29370655 + (TG)n Simple_repeat Simple_repeat 2 54 0 464 267 110 104 chr9 112900816 112901269 -29370175 - MLT1H LTR MaLR 0 549 94 2097 125 3 26 chr9 112901388 112901693 -29369751 - AluSx SINE Alu -14 298 1 226 152 0 0 chr9 112901773 112901806 -29369638 + AluY SINE Alu 1 33 -266 243 0 0 0 chr9 112901810 112901837 -29369607 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1039 165 10 31 chr9 112902330 112902524 -29368920 - MER20 DNA MER1_type -29 190 1 206 289 41 52 chr9 112902584 112902681 -29368763 - L2 LINE L2 -185 3087 2992 271 205 77 26 chr9 112902792 112902870 -29368574 - L2 LINE L2 -481 2833 2752 2176 140 0 6 chr9 112903152 112903466 -29367978 + AluJo SINE Alu 1 312 0 258 116 0 0 chr9 112903573 112903616 -29367828 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 566 253 86 43 chr9 112903797 112904030 -29367414 + MIR SINE MIR 13 255 -7 2169 96 0 7 chr9 112905351 112905644 -29365800 + AluY SINE Alu 21 311 0 807 219 12 0 chr9 112906940 112907100 -29364344 + FRAM SINE Alu 1 162 -14 216 0 0 0 chr9 112907258 112907282 -29364162 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1120 140 39 6 chr9 112909108 112909312 -29362132 - AluSq SINE Alu 0 309 100 2058 124 17 0 chr9 112909690 112909981 -29361463 - AluSx SINE Alu -16 296 1 2661 44 0 0 chr9 112910607 112910902 -29360542 + AluY SINE Alu 11 305 -6 2445 82 0 0 chr9 112911246 112911540 -29359904 - AluSx SINE Alu -17 295 2 258 303 66 0 chr9 112911887 112912009 -29359435 - L2 LINE L2 -903 2411 2282 740 321 60 45 chr9 112915126 112915662 -29355782 - L3 LINE CR1 -2 1575 1032 802 297 96 32 chr9 112916203 112916641 -29354803 - L3 LINE CR1 -809 768 303 1687 94 20 0 chr9 112917108 112917362 -29354082 - L1MA4 LINE L1 -5 6295 6037 207 0 0 0 chr9 112918531 112918554 -29352890 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr9 112918665 112918693 -29352751 + AT_rich Low_complexity Low_complexity 1 28 0 34 24 0 0 chr9 112919513 112919554 -29351890 + AT_rich Low_complexity Low_complexity 1 41 0 2200 136 0 0 chr9 112919762 112920071 -29351373 + AluSx SINE Alu 1 309 -3 188 370 49 31 chr9 112921691 112921915 -29349529 - L2 LINE L2 -350 2964 2737 474 197 8 0 chr9 112921955 112922064 -29349380 - MER58B DNA MER1_type 0 341 104 339 148 12 25 chr9 112922074 112922155 -29349289 + CT-rich Low_complexity Low_complexity 1 80 0 507 183 16 48 chr9 112922156 112922282 -29349162 - MER58C DNA MER1_type -84 131 10 291 307 87 45 chr9 112922347 112922634 -29348810 - L2 LINE L2 -710 2604 2306 200 211 87 77 chr9 112922811 112922915 -29348529 - L2 LINE L2 -645 2669 2565 21 57 0 0 chr9 112925579 112925614 -29345830 + AT_rich Low_complexity Low_complexity 1 35 0 2198 85 26 23 chr9 112927421 112927728 -29343716 + AluSp SINE Alu 1 308 -5 1915 139 3 29 chr9 112931018 112931327 -29340117 + AluJb SINE Alu 1 301 -11 442 279 29 23 chr9 112932604 112932776 -29338668 - MER5A DNA MER1_type 0 189 17 260 234 0 85 chr9 112933017 112933070 -29338374 + L2 LINE L2 3208 3251 -62 965 210 83 5 chr9 112933070 112933275 -29338169 - MER58A DNA MER1_type -3 221 1 260 234 0 85 chr9 112933275 112933315 -29338129 + L2 LINE L2 3251 3293 -20 358 169 28 0 chr9 112934115 112934186 -29337258 - MER116 DNA Mariner -5 75 3 317 266 35 26 chr9 112934351 112934464 -29336980 - MIR SINE MIR -71 191 78 2318 113 3 0 chr9 112934571 112934880 -29336564 + AluSg SINE Alu 1 310 0 1826 10 0 0 chr9 112935483 112935687 -29335757 + L1PA2 LINE L1 5952 6155 0 605 238 31 153 chr9 112935735 112936122 -29335322 + MER102b DNA MER1_type 1 340 -1 1513 117 0 24 chr9 112936754 112936967 -29334477 + AluSc SINE Alu 85 292 -17 279 274 0 0 chr9 112937324 112937397 -29334047 - Charlie8 DNA MER1_type -1 2416 2344 1514 144 0 0 chr9 112937433 112937648 -29333796 - AluSx SINE Alu -97 215 1 656 194 106 12 chr9 112938043 112938213 -29333231 + MER113 DNA MER1_type? 287 472 -49 274 321 62 9 chr9 112938269 112938381 -29333063 - MIR SINE MIR -116 146 29 225 196 22 0 chr9 112938879 112938925 -29332519 + CT-rich Low_complexity Low_complexity 2 48 0 403 221 64 76 chr9 112939032 112939204 -29332240 - MER5B DNA MER1_type -3 175 6 429 311 68 0 chr9 112939282 112939430 -29332014 + MIR SINE MIR 26 183 -79 292 275 66 0 chr9 112939751 112939842 -29331602 + MIR SINE MIR 49 145 -63 443 171 53 13 chr9 112939908 112940060 -29331384 + GA-rich Low_complexity Low_complexity 3 160 0 205 273 0 0 chr9 112940608 112940663 -29330781 + MIR SINE MIR 61 115 -147 2369 80 3 3 chr9 112940707 112941007 -29330437 + AluY SINE Alu 1 300 -11 690 204 0 23 chr9 112941842 112941974 -29329470 + FLAM_A SINE Alu 4 132 -1 564 216 48 0 chr9 112942358 112942483 -29328961 + MER91C DNA MER1_type 1 131 -9 197 150 26 22 chr9 112943517 112943567 -29327877 + MIR SINE MIR 107 154 -54 899 219 99 0 chr9 112943690 112943891 -29327553 + MER58A DNA MER1_type 2 222 -2 220 291 30 67 chr9 112943941 112943986 -29327458 - MIR SINE MIR -7 255 210 2048 99 0 4 chr9 112943986 112944249 -29327195 - AluSx SINE Alu -12 300 39 220 291 30 67 chr9 112944249 112944337 -29327107 - MIR SINE MIR -52 210 127 190 318 33 40 chr9 112944410 112944561 -29326883 - L2 LINE L2 -221 3051 2902 396 297 75 42 chr9 112944683 112944895 -29326549 + Charlie8 DNA MER1_type 38 256 -2161 1878 281 98 24 chr9 112944912 112945548 -29325896 + MER115 DNA AcHobo 11 693 0 204 289 26 0 chr9 112945719 112945795 -29325649 - L2 LINE L2 -657 2657 2580 355 293 9 9 chr9 112945864 112945970 -29325474 - MER81 DNA DNA 0 114 9 290 276 103 32 chr9 112946466 112946581 -29324863 + MIR SINE MIR 77 207 -55 3087 123 47 6 chr9 112946581 112947095 -29324349 + L1MB4 LINE L1 5646 6180 0 290 276 103 32 chr9 112947095 112947135 -29324309 + MIR SINE MIR 207 243 -19 619 290 14 37 chr9 112947748 112947965 -29323479 + MIR SINE MIR 30 241 -21 390 299 153 0 chr9 112948089 112948246 -29323198 - MER5A DNA MER1_type 0 189 9 901 266 121 45 chr9 112948293 112948755 -29322689 - MLT1F1 LTR MaLR 0 567 59 2222 124 0 0 chr9 112948755 112949053 -29322391 - AluSx SINE Alu -14 298 1 901 266 121 45 chr9 112949053 112949117 -29322327 - MLT1F1 LTR MaLR -508 59 1 383 333 32 0 chr9 112949276 112949402 -29322042 + L2 LINE L2 3137 3266 -6 240 35 0 0 chr9 112949404 112949433 -29322011 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 225 0 0 0 chr9 112950432 112950457 -29320987 + (CA)n Simple_repeat Simple_repeat 1 25 0 299 264 132 0 chr9 112950465 112950571 -29320873 - L2 LINE L2 -263 3050 2931 771 246 128 25 chr9 112951464 112951745 -29319699 - MER5C DNA MER1_type -14 310 1 195 261 109 0 chr9 112951927 112952019 -29319425 + MIR SINE MIR 1 102 -160 694 156 141 0 chr9 112952124 112952252 -29319192 + AluJb SINE Alu 155 300 -12 420 200 122 0 chr9 112952252 112952367 -29319077 + L2 LINE L2 3181 3309 -4 270 0 0 0 chr9 112952425 112952455 -29318989 + (T)n Simple_repeat Simple_repeat 1 30 0 1941 122 0 0 chr9 112952604 112952866 -29318578 - AluSq SINE Alu -51 262 1 232 314 78 13 chr9 112953612 112953765 -29317679 + MIR SINE MIR 1 163 -99 341 104 0 0 chr9 112954031 112954079 -29317365 + U5 snRNA snRNA 1 48 -68 249 211 0 0 chr9 112954377 112954429 -29317015 - L2 LINE L2 -1 3271 3220 863 260 44 4 chr9 112954500 112954727 -29316717 - MLT1I LTR MaLR -116 293 58 453 272 98 12 chr9 112954811 112954984 -29316460 - MIR SINE MIR -27 235 48 599 275 0 0 chr9 112955043 112955174 -29316270 - L2 LINE L2 -6 3266 3136 280 97 48 48 chr9 112955876 112955938 -29315506 - MER96B DNA MER1_type? -71 346 285 266 172 190 0 chr9 112955930 112955988 -29315456 + MER58A DNA MER1_type 7 75 -32 * 295 226 32 0 chr9 112956035 112956097 -29315347 + MER96B DNA MER1_type? 354 417 0 844 250 5 0 chr9 112956165 112956365 -29315079 - MIR SINE MIR -6 256 56 187 289 96 19 chr9 112956397 112956501 -29314943 - L2 LINE L2 -181 3091 2980 982 211 9 9 chr9 112956618 112956831 -29314613 - MIR SINE MIR -3 259 47 611 159 132 93 chr9 112956933 112957115 -29314329 - MER5A DNA MER1_type 0 189 1 444 239 78 64 chr9 112957545 112957763 -29313681 - MLT1K LTR MaLR 0 588 368 2157 134 0 10 chr9 112958940 112959245 -29312199 - AluSx SINE Alu -10 302 1 258 351 0 0 chr9 112959540 112959614 -29311830 + L2 LINE L2 3181 3254 -18 182 292 46 15 chr9 112960185 112960250 -29311194 + MIR SINE MIR 86 152 -56 305 328 9 26 chr9 112960559 112960675 -29310769 + MER5A DNA MER1_type 64 177 -12 436 311 113 13 chr9 112960826 112961064 -29310380 + MIR SINE MIR 1 262 0 201 28 28 56 chr9 112961585 112961621 -29309823 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 6433 88 22 17 chr9 112961632 112962567 -29308877 + L1MA3 LINE L1 5365 6304 -1 1567 200 11 4 chr9 112962593 112962873 -29308571 - AluJo SINE Alu -30 282 1 363 324 17 17 chr9 112963257 112963436 -29308008 + CT-rich Low_complexity Low_complexity 2 180 0 2122 142 7 0 chr9 112963534 112963844 -29307600 + AluSx SINE Alu 1 312 0 566 236 0 0 chr9 112964327 112964433 -29307011 + FLAM_C SINE Alu 3 108 -35 28 61 0 0 chr9 112964466 112964515 -29306929 + AT_rich Low_complexity Low_complexity 1 49 0 1522 155 16 74 chr9 112964524 112964833 -29306611 + AluJo SINE Alu 1 291 -21 2405 93 0 3 chr9 112964842 112965154 -29306290 + AluSx SINE Alu 1 311 -1 2310 52 0 4 chr9 112965311 112965583 -29305861 + AluY SINE Alu 25 295 -16 535 133 41 0 chr9 112965593 112965691 -29305753 - AluSg/x SINE Alu -2 308 207 1868 130 15 0 chr9 112965793 112966063 -29305381 - AluSx SINE Alu -38 274 1 2242 133 0 0 chr9 112967233 112967542 -29303902 - AluSg SINE Alu -1 309 1 992 293 45 30 chr9 112967692 112968133 -29303311 - MLT1L LTR MaLR -9 606 159 844 137 19 0 chr9 112968622 112968783 -29302661 + GA-rich Low_complexity Low_complexity 3 166 0 248 111 22 0 chr9 112968795 112968840 -29302604 + GA-rich Low_complexity Low_complexity 3 48 0 2235 122 39 28 chr9 112968876 112969236 -29302208 + THE1B LTR MaLR 1 364 0 1914 143 43 3 chr9 112970173 112970473 -29300971 - AluSx SINE Alu 0 312 1 1925 160 3 10 chr9 112971346 112971652 -29299792 - AluJo SINE Alu -8 304 1 466 286 87 0 chr9 112971916 112972101 -29299343 + L3 LINE CR1 1218 1418 -159 1540 176 100 67 chr9 112972101 112972521 -29298923 - MLT1C LTR MaLR 0 467 34 1137 150 28 0 chr9 112972529 112972709 -29298735 - AluJo SINE Alu -4 308 124 227 369 76 13 chr9 112972744 112972901 -29298543 + L3 LINE CR1 1410 1576 -1 204 40 0 0 chr9 112973044 112973069 -29298375 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 248 0 0 30 chr9 112973068 112973101 -29298343 + (GA)n Simple_repeat Simple_repeat 2 33 0 570 72 0 0 chr9 112973101 112973170 -29298274 - LTR23 LTR ERV1 -49 388 320 584 305 80 44 chr9 112973249 112973747 -29297697 - MLT1K LTR MaLR -8 580 21 502 210 23 6 chr9 112973837 112974013 -29297431 + CT-rich Low_complexity Low_complexity 2 180 0 2601 106 20 3 chr9 112975540 112975898 -29295546 - THE1B LTR MaLR 0 364 1 230 400 0 8 chr9 112976875 112977005 -29294439 + (TG)n Simple_repeat Simple_repeat 2 130 0 1922 168 0 3 chr9 112977020 112977318 -29294126 + AluJb SINE Alu 1 297 -15 24 53 0 0 chr9 112977318 112977356 -29294088 + AT_rich Low_complexity Low_complexity 1 38 0 399 230 40 0 chr9 112977384 112977484 -29293960 + MIR SINE MIR 104 207 -55 999 133 14 0 chr9 112978753 112978896 -29292548 + FRAM SINE Alu 20 164 -12 231 276 127 22 chr9 112978922 112979056 -29292388 + L3 LINE CR1 1410 1557 -20 233 170 100 100 chr9 112979064 112979164 -29292280 - L2 LINE L2 -15 3298 3199 1899 130 7 46 chr9 112979170 112979514 -29291930 + AluSx SINE Alu 1 312 0 44089 51 1 3 chr9 112980124 112986287 -29285157 - L1PA4 LINE L1 0 6155 2 1609 156 52 39 chr9 112986294 112986776 -29284668 - AluJb SINE Alu 0 486 1 22 0 0 0 chr9 112986817 112986839 -29284605 + AT_rich Low_complexity Low_complexity 1 22 0 910 272 138 39 chr9 112986981 112987466 -29283978 + MLT1L LTR MaLR 83 615 0 3646 138 51 16 chr9 112987784 112988415 -29283029 - MER39B LTR ERV1 0 653 1 384 76 106 30 chr9 112988477 112988543 -29282901 + AluJb SINE Alu 66 136 -166 33 0 0 0 chr9 112988543 112988576 -29282868 + AT_rich Low_complexity Low_complexity 1 33 0 736 301 21 0 chr9 112988734 112988927 -29282517 - MLT1I LTR MaLR -10 399 203 451 250 9 19 chr9 112989089 112989197 -29282247 - MLT1I LTR MaLR -300 109 3 182 91 30 0 chr9 112989405 112989438 -29282006 + T-rich Low_complexity Low_complexity 1 34 0 2540 70 0 0 chr9 112989584 112989884 -29281560 + AluY SINE Alu 1 300 -11 387 179 60 12 chr9 112990540 112990708 -29280736 + (TA)n Simple_repeat Simple_repeat 1 176 0 34 84 0 0 chr9 112990769 112990852 -29280592 + AT_rich Low_complexity Low_complexity 1 83 0 2413 84 13 0 chr9 112990869 112991167 -29280277 + AluSp SINE Alu 1 302 -11 240 184 31 0 chr9 112991167 112991265 -29280179 + (TA)n Simple_repeat Simple_repeat 2 102 0 180 153 28 14 chr9 112991329 112991401 -29280043 + (TA)n Simple_repeat Simple_repeat 1 73 0 2154 139 7 0 chr9 112992164 112992474 -29278970 + AluSx SINE Alu 1 312 0 251 111 0 175 chr9 112993128 112993191 -29278253 - MLT1H LTR MaLR 0 549 498 272 233 16 101 chr9 112993211 112993340 -29278104 - MLT1H LTR MaLR -195 354 237 881 226 67 5 chr9 112994067 112994275 -29277169 + MER58A DNA MER1_type 1 221 -3 2301 100 0 23 chr9 112994646 112994955 -29276489 + AluSx SINE Alu 5 306 -6 447 106 0 0 chr9 112994955 112995021 -29276423 + (TA)n Simple_repeat Simple_repeat 2 67 0 1891 116 14 31 chr9 112995480 112995806 -29275638 + AluSq SINE Alu 11 313 0 290 143 0 0 chr9 112996369 112996411 -29275033 + 5S rRNA rRNA 1 42 -79 2413 57 0 0 chr9 112997036 112997318 -29274126 - AluY SINE Alu -17 294 13 2262 98 0 0 chr9 112997881 112998177 -29273267 - AluSc SINE Alu -13 296 1 2072 141 0 7 chr9 112998478 112998782 -29272662 - AluSx SINE Alu -10 302 1 4107 148 47 34 chr9 112999052 112999111 -29272333 + L1PA16 LINE L1 5392 5449 -717 2197 110 3 3 chr9 112999111 112999412 -29272032 + AluSc SINE Alu 1 301 -8 4107 148 47 34 chr9 112999412 113000117 -29271327 + L1PA16 LINE L1 5449 6166 0 825 124 113 113 chr9 113000435 113000552 -29270892 + MSTA LTR MaLR 242 361 -67 2238 123 0 3 chr9 113000552 113000854 -29270590 + AluSx SINE Alu 1 301 -11 825 124 113 113 chr9 113000854 113000921 -29270523 + MSTA LTR MaLR 360 426 -2 1203 204 65 84 chr9 113000922 113000979 -29270465 + MLT1C LTR MaLR 59 116 -351 2011 137 14 0 chr9 113000979 113001263 -29270181 + AluSx SINE Alu 1 288 -24 1203 204 65 84 chr9 113001263 113001622 -29269822 + MLT1C LTR MaLR 116 467 0 256 267 105 12 chr9 113001979 113002065 -29269379 - MER5A DNA MER1_type -52 137 44 493 186 0 0 chr9 113002416 113002502 -29268942 + FLAM_A SINE Alu 50 135 -7 192 135 0 0 chr9 113002694 113002731 -29268713 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 6252 29 0 0 chr9 113002732 113003453 -29267991 - L1PA4 LINE L1 -3 6152 5432 2321 96 6 3 chr9 113003453 113003765 -29267679 - AluSp SINE Alu 0 313 1 1503 160 0 8 chr9 113003861 113004099 -29267345 + AluJb SINE Alu 1 236 -76 192 97 0 0 chr9 113004099 113004130 -29267314 + (TAAAAA)n Simple_repeat Simple_repeat 3 33 0 1126 203 65 97 chr9 113004240 113004653 -29266791 - L1MB8 LINE L1 0 6178 5779 1903 164 0 10 chr9 113004653 113004951 -29266493 + AluJb SINE Alu 1 295 -17 22 0 0 0 chr9 113005004 113005026 -29266418 + AT_rich Low_complexity Low_complexity 1 22 0 2073 204 10 29 chr9 113005556 113006041 -29265403 - L1MB8 LINE L1 -402 5776 5300 1774 169 17 3 chr9 113006228 113006529 -29264915 - AluJb SINE Alu -6 306 2 927 174 28 38 chr9 113006606 113006819 -29264625 - L1MB3 LINE L1 -2 6181 5971 2289 108 3 0 chr9 113006913 113007218 -29264226 + AluSx SINE Alu 1 306 -6 641 296 59 0 chr9 113008550 113008753 -29262691 - MIR SINE MIR 0 262 48 577 173 0 3 chr9 113008862 113009003 -29262441 - MER53 DNA DNA -5 184 1 1940 180 150 40 chr9 113010158 113010737 -29260707 - LTR48B LTR ERV1 -1 643 1 2097 115 0 22 chr9 113011264 113011577 -29259867 - AluSx SINE Alu -2 310 5 823 233 38 0 chr9 113011652 113011862 -29259582 - MIR SINE MIR -1 261 44 180 0 0 0 chr9 113012212 113012232 -29259212 + (A)n Simple_repeat Simple_repeat 1 20 0 1405 214 18 14 chr9 113012428 113012563 -29258881 + AluJb SINE Alu 1 134 -178 2245 96 0 0 chr9 113012563 113012943 -29258501 + AluSg SINE Alu 2 381 0 1405 214 18 14 chr9 113012943 113013087 -29258357 + AluJb SINE Alu 134 282 -30 23 0 0 0 chr9 113013087 113013110 -29258334 + AT_rich Low_complexity Low_complexity 1 23 0 205 188 62 0 chr9 113013539 113013587 -29257857 + CT-rich Low_complexity Low_complexity 1 51 0 597 330 14 5 chr9 113013589 113013801 -29257643 - MIR SINE MIR -21 241 28 21 0 0 0 chr9 113013848 113013869 -29257575 + AT_rich Low_complexity Low_complexity 1 21 0 366 294 61 30 chr9 113013998 113014195 -29257249 - MIR SINE MIR -4 258 56 2298 112 3 3 chr9 113014297 113014609 -29256835 - AluSp SINE Alu -1 312 1 2357 77 27 0 chr9 113014756 113015054 -29256390 - AluSq SINE Alu -7 306 1 493 160 76 10 chr9 113015329 113015747 -29255697 + (TA)n Simple_repeat Simple_repeat 1 445 0 238 172 90 28 chr9 113015762 113015907 -29255537 + (TA)n Simple_repeat Simple_repeat 1 154 0 * 341 146 43 76 chr9 113015890 113016075 -29255369 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 2198 86 27 7 chr9 113016094 113016386 -29255058 - AluY SINE Alu -13 298 1 873 277 89 31 chr9 113016578 113017196 -29254248 + L2 LINE L2 2526 3170 -143 2392 81 3 19 chr9 113017348 113017657 -29253787 - AluSp SINE Alu -9 304 1 1179 262 81 36 chr9 113017661 113018206 -29253238 - L2 LINE L2 -11 3302 2783 1488 182 47 14 chr9 113018206 113018519 -29252925 + AluJo SINE Alu 1 322 0 1179 262 81 36 chr9 113018519 113018774 -29252670 - L2 LINE L2 -530 2783 1739 2173 98 20 7 chr9 113018808 113019104 -29252340 + AluSq SINE Alu 1 300 -13 1663 162 4 14 chr9 113019149 113019427 -29252017 + AluJb SINE Alu 31 305 -7 233 215 273 0 chr9 113019491 113019612 -29251832 - L2 LINE L2 -1597 1717 1564 * 413 244 79 24 chr9 113019594 113019721 -29251723 - MIR SINE MIR -128 134 1 204 40 0 0 chr9 113019844 113019869 -29251575 + (CAG)n Simple_repeat Simple_repeat 2 26 0 352 227 13 0 chr9 113019993 113020068 -29251376 + Charlie8 DNA MER1_type 2342 2417 0 367 158 0 40 chr9 113020103 113020204 -29251240 + GA-rich Low_complexity Low_complexity 3 99 0 191 35 0 35 chr9 113020200 113020229 -29251215 + (GGAGA)n Simple_repeat Simple_repeat 5 32 0 * 218 265 24 36 chr9 113021953 113022036 -29249408 - MER5A DNA MER1_type 0 189 108 1921 116 4 0 chr9 113022296 113022554 -29248890 + AluSp SINE Alu 1 259 -54 1662 129 148 10 chr9 113022948 113023259 -29248185 - L1MA2 LINE L1 0 6304 5951 257 331 51 37 chr9 113023556 113023852 -29247592 - L1ME LINE L1 -476 5645 5346 1984 147 10 13 chr9 113023857 113024170 -29247274 - AluJb SINE Alu 0 312 1 264 253 53 0 chr9 113024212 113024307 -29247137 - L1ME LINE L1 -847 5299 5200 2429 94 7 0 chr9 113024442 113024801 -29246643 - AluSx SINE Alu 0 361 1 373 221 97 9 chr9 113025599 113025712 -29245732 - MER5A DNA MER1_type 0 189 67 2193 105 7 7 chr9 113025713 113026019 -29245425 - AluSg SINE Alu -4 306 1 786 160 263 11 chr9 113026083 113026258 -29245186 - MER20 DNA MER1_type 0 219 1 180 205 26 0 chr9 113026352 113026391 -29245053 - L2 LINE L2 -8 3264 3225 2482 79 3 0 chr9 113026616 113026919 -29244525 - AluSp SINE Alu -9 304 1 221 100 50 0 chr9 113027229 113027269 -29244175 + GA-rich Low_complexity Low_complexity 3 44 0 268 317 0 0 chr9 113028418 113028500 -29242944 + (CA)n Simple_repeat Simple_repeat 1 82 0 23 33 0 0 chr9 113029524 113029554 -29241890 + GC_rich Low_complexity Low_complexity 1 30 0 2333 111 13 0 chr9 113030772 113031079 -29240365 - AluSq SINE Alu -2 311 1 2389 98 0 0 chr9 113032058 113032353 -29239091 - AluY SINE Alu -16 295 1 238 225 0 113 chr9 113032387 113032467 -29238977 + MER69 DNA AcHobo 1 71 -2455 2290 103 3 10 chr9 113033396 113033708 -29237736 + AluSx SINE Alu 2 311 -1 2393 85 3 0 chr9 113034269 113034563 -29236881 + AluSp SINE Alu 1 295 -18 1848 136 3 77 chr9 113034724 113035048 -29236396 - AluJo SINE Alu -12 300 1 2182 110 3 16 chr9 113035314 113035646 -29235798 - AluSq SINE Alu 0 313 3 863 170 0 0 chr9 113035673 113035814 -29235630 - MLT1A1 LTR MaLR -224 141 1 535 136 12 0 chr9 113037296 113037377 -29234067 - FRAM SINE Alu -23 153 72 212 309 21 11 chr9 113037413 113037507 -29233937 - MIR SINE MIR -120 142 48 2267 94 10 3 chr9 113037522 113037829 -29233615 - AluSc SINE Alu 0 309 1 398 267 0 0 chr9 113037870 113037971 -29233473 + MER5A DNA MER1_type 9 109 -80 814 189 18 24 chr9 113038105 113038269 -29233175 + MER20 DNA MER1_type 57 219 0 196 297 16 0 chr9 113038397 113038461 -29232983 + L3b LINE CR1 1302 1366 -217 2352 97 3 0 chr9 113039042 113039351 -29232093 - AluSx SINE Alu -2 310 1 1761 137 41 0 chr9 113040256 113040527 -29230917 - AluSx SINE Alu -3 309 28 2075 104 0 4 chr9 113040750 113041029 -29230415 - AluSc SINE Alu -9 300 23 314 159 14 0 chr9 113041758 113041827 -29229617 + (TA)n Simple_repeat Simple_repeat 1 70 0 1175 128 0 0 chr9 113041829 113041985 -29229459 - AluSx SINE Alu -151 161 6 311 287 125 7 chr9 113041985 113042121 -29229323 - MIR SINE MIR -98 164 13 2856 77 16 0 chr9 113042248 113042624 -29228820 - L1PA10 LINE L1 -11 6157 5776 597 103 0 0 chr9 113042835 113042913 -29228531 - MLT1B LTR MaLR 0 390 313 1250 138 135 60 chr9 113042917 113043235 -29228209 + MER4A LTR ERV1 1 342 -322 572 113 270 0 chr9 113043297 113043412 -29228032 + MER4C LTR ERV1 300 445 -20 1540 150 17 83 chr9 113043414 113043585 -29227859 - MLT1B LTR MaLR -65 325 205 2329 110 0 13 chr9 113043585 113043895 -29227549 - AluSq SINE Alu -7 306 1 1540 150 17 83 chr9 113043895 113044084 -29227360 - MLT1B LTR MaLR -185 205 5 466 198 0 0 chr9 113044613 113044694 -29226750 + AluJ/FLAM SINE Alu 3 83 -229 1614 186 14 7 chr9 113045352 113045677 -29225767 - AluJo SINE Alu 0 312 1 2477 141 29 13 chr9 113045686 113046139 -29225305 - L1MB3 LINE L1 -3 6180 5721 705 242 26 34 chr9 113046358 113046566 -29224878 + MIR SINE MIR 1 206 -56 1839 162 0 14 chr9 113046570 113046866 -29224578 + AluJo SINE Alu 5 296 -16 21 0 0 0 chr9 113048014 113048035 -29223409 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 113048664 113048690 -29222754 + AT_rich Low_complexity Low_complexity 1 26 0 2026 133 0 10 chr9 113048690 113048984 -29222460 - AluJb SINE Alu -21 291 1 185 358 63 0 chr9 113050358 113050453 -29220991 - MIR SINE MIR -118 144 44 25 90 0 0 chr9 113050540 113050607 -29220837 + AT_rich Low_complexity Low_complexity 1 67 0 2218 123 0 7 chr9 113051031 113051332 -29220112 + AluSx SINE Alu 1 299 -13 423 132 26 13 chr9 113051334 113051410 -29220034 - MER116 DNA Mariner -3 77 1 2439 218 58 27 chr9 113054044 113054357 -29217087 + L1MC4 LINE L1 7259 7561 -481 681 221 0 0 chr9 113054357 113054479 -29216965 + FLAM_A SINE Alu 1 122 -11 2439 218 58 27 chr9 113054479 113054788 -29216656 + L1MC4 LINE L1 7561 7900 -142 2458 103 0 0 chr9 113054872 113055184 -29216260 + AluSx SINE Alu 1 312 0 453 199 48 41 chr9 113055561 113055707 -29215737 - L1ME4a LINE L1 -2 6119 5973 183 80 0 0 chr9 113055733 113055758 -29215686 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1053 194 122 73 chr9 113055895 113056363 -29215081 - L1MC4 LINE L1 0 8042 7552 400 287 90 11 chr9 113056397 113056604 -29214840 - L1ME4a LINE L1 -296 5825 5605 262 105 18 18 chr9 113056616 113056673 -29214771 + (TA)n Simple_repeat Simple_repeat 2 58 0 588 318 16 41 chr9 113057255 113057500 -29213944 + MIR SINE MIR 23 261 -1 198 291 35 78 chr9 113057583 113057724 -29213720 - MIR SINE MIR -61 147 13 1001 189 17 80 chr9 113057831 113057885 -29213559 - MER58A DNA MER1_type -2197 223 167 2531 81 0 0 chr9 113057885 113058193 -29213251 + AluSg SINE Alu 1 308 -2 1001 189 17 80 chr9 113058193 113058376 -29213068 - MER58A DNA MER1_type -2253 167 1 2144 104 0 0 chr9 113059384 113059663 -29211781 + AluSx SINE Alu 20 298 -14 2333 104 0 0 chr9 113059940 113060247 -29211197 + AluSx SINE Alu 2 308 -4 189 250 0 58 chr9 113060316 113060368 -29211076 - L2 LINE L2 -23 3290 3242 2270 104 0 16 chr9 113060815 113061132 -29210312 - AluSx SINE Alu 0 312 1 194 303 36 100 chr9 113061858 113062109 -29209335 - L3 LINE CR1 -193 1384 1150 1848 109 116 4 chr9 113062233 113062508 -29208936 - AluSq SINE Alu -7 306 1 369 228 0 152 chr9 113062736 113062839 -29208605 + HAL1 LINE L1 1 69 -2438 1665 140 13 51 chr9 113062839 113063011 -29208433 - L1MB3 LINE L1 -9 6174 6018 2516 80 3 0 chr9 113063011 113063322 -29208122 + AluSp SINE Alu 1 312 -1 1665 140 13 51 chr9 113063322 113063464 -29207980 - L1MB3 LINE L1 -165 6018 5872 369 228 0 152 chr9 113063464 113063531 -29207913 + HAL1 LINE L1 69 145 -2362 236 282 51 0 chr9 113063608 113063686 -29207758 - HAL1 LINE L1 -2222 285 204 1059 281 97 10 chr9 113063791 113064603 -29206841 + HAL1 LINE L1 1417 2330 -177 1224 177 106 59 chr9 113064642 113064876 -29206568 + MER2 DNA MER2_type 9 264 -81 2401 89 0 16 chr9 113064876 113065191 -29206253 - AluY SINE Alu -1 310 1 1224 177 106 59 chr9 113065191 113065278 -29206166 + MER2 DNA MER2_type 264 345 0 267 277 0 0 chr9 113065437 113065520 -29205924 + HAL1 LINE L1 1689 1771 -736 406 249 230 72 chr9 113065541 113065982 -29205462 + HAL1 LINE L1 1846 2393 -114 2292 101 3 0 chr9 113065982 113066279 -29205165 + AluSq SINE Alu 7 304 -9 406 249 230 72 chr9 113066279 113066390 -29205054 + HAL1 LINE L1 2393 2485 -22 240 273 0 0 chr9 113066522 113066577 -29204867 + L2 LINE L2 3251 3305 -8 356 341 64 34 chr9 113066964 113067228 -29204216 + L2 LINE L2 2693 2964 -350 224 319 42 34 chr9 113067286 113067405 -29204039 + L2 LINE L2 2973 3092 -180 486 273 162 8 chr9 113067865 113068118 -29203326 - L2 LINE L2 0 3313 3022 4330 104 24 11 chr9 113068158 113068784 -29202660 - MER51A LTR ERV1 0 634 1 520 161 50 144 chr9 113068802 113068859 -29202585 - MER3 DNA MER1_type 0 209 148 2295 109 3 0 chr9 113068859 113069170 -29202274 - AluSx SINE Alu 0 312 1 520 161 50 144 chr9 113069170 113069292 -29202152 - MER3 DNA MER1_type -61 148 47 210 37 0 0 chr9 113071555 113071582 -29199862 + (TG)n Simple_repeat Simple_repeat 1 27 0 2529 78 0 0 chr9 113071604 113071913 -29199531 - AluY SINE Alu -2 309 1 475 234 39 0 chr9 113071917 113072045 -29199399 - L1ME1 LINE L1 -1 6165 6033 2135 139 0 0 chr9 113072201 113072495 -29198949 + AluSx SINE Alu 1 294 -18 1141 258 106 52 chr9 113072778 113073239 -29198205 - MLT1K LTR MaLR -42 546 61 21 0 0 0 chr9 113073314 113073335 -29198109 + AT_rich Low_complexity Low_complexity 1 21 0 244 319 174 14 chr9 113073803 113074016 -29197428 + L2 LINE L2 2809 3055 -217 947 172 93 20 chr9 113074076 113074280 -29197164 + MER20 DNA MER1_type 1 219 0 2576 138 57 5 chr9 113074531 113074938 -29196506 - MSTA LTR MaLR 0 428 1 1568 188 72 7 chr9 113076403 113076578 -29194866 - AluJo SINE Alu 0 312 109 207 0 0 0 chr9 113076578 113076601 -29194843 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1568 188 72 7 chr9 113076601 113076718 -29194726 - AluJo SINE Alu -203 109 1 9962 40 108 2 chr9 113077073 113078333 -29193111 - SVA Other Other 0 1386 28 277 221 14 47 chr9 113078351 113078492 -29192952 + MIR SINE MIR 15 210 -52 218 250 0 0 chr9 113078535 113078552 -29192892 - L2 LINE L2 0 3313 3297 641 120 32 32 chr9 113078552 113078677 -29192767 + L1MB7 LINE L1 6060 6184 0 218 250 0 0 chr9 113078677 113078715 -29192729 - L2 LINE L2 -15 3298 3258 343 211 137 11 chr9 113078718 113078813 -29192631 - MIR SINE MIR -81 127 21 326 195 12 0 chr9 113080151 113080233 -29191211 + (TA)n Simple_repeat Simple_repeat 1 83 0 326 325 100 0 chr9 113082119 113082279 -29189165 - MIR SINE MIR -39 223 48 230 75 50 0 chr9 113082733 113082773 -29188671 + C-rich Low_complexity Low_complexity 1 42 0 594 304 69 49 chr9 113083133 113083479 -29187965 + L2 LINE L2 2920 3272 0 1352 156 22 0 chr9 113087311 113087536 -29183908 + L1MA5A LINE L1 6061 6290 -7 2070 112 0 30 chr9 113087719 113088015 -29183429 - AluSx SINE Alu -21 291 5 2357 84 13 3 chr9 113088256 113088564 -29182880 - AluSq SINE Alu -2 311 1 861 136 43 12 chr9 113088798 113088960 -29182484 + L1MB4 LINE L1 6014 6180 0 22 0 0 0 chr9 113088985 113089007 -29182437 + AT_rich Low_complexity Low_complexity 1 22 0 2313 104 3 13 chr9 113089187 113089503 -29181941 + AluSp SINE Alu 1 313 0 669 99 0 30 chr9 113089978 113090079 -29181365 + L1MA8 LINE L1 5584 5681 -610 1636 151 44 17 chr9 113090085 113090383 -29181061 + L1MA8 LINE L1 5984 6289 -2 2269 115 7 0 chr9 113090694 113090998 -29180446 - AluSx SINE Alu -6 306 1 1840 192 0 3 chr9 113091231 113091544 -29179900 - AluJb SINE Alu 0 312 1 21 0 0 0 chr9 113091552 113091573 -29179871 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr9 113091848 113091880 -29179564 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 531 280 108 14 chr9 113092450 113092664 -29178780 + MIR SINE MIR 28 261 -1 679 251 47 17 chr9 113092857 113093092 -29178352 + MIR SINE MIR 11 252 -10 2058 99 0 32 chr9 113093341 113093663 -29177781 - AluSc SINE Alu 0 347 35 2339 82 0 30 chr9 113093680 113093984 -29177460 - AluSq SINE Alu -18 295 1 2110 196 54 14 chr9 113094189 113094633 -29176811 - MLT1C LTR MaLR 0 467 6 223 245 22 24 chr9 113094638 113094729 -29176715 - MIR SINE MIR -63 145 69 378 143 0 0 chr9 113096507 113096570 -29174874 + (TG)n Simple_repeat Simple_repeat 1 63 0 2006 141 0 25 chr9 113097257 113097576 -29173868 - AluJb SINE Alu -1 311 1 994 176 102 21 chr9 113097680 113098000 -29173444 - MSTD LTR MaLR 0 428 1 201 147 0 0 chr9 113098024 113098058 -29173386 + (GA)n Simple_repeat Simple_repeat 2 35 0 200 140 35 35 chr9 113098063 113098120 -29173324 + (TA)n Simple_repeat Simple_repeat 2 58 0 348 24 0 0 chr9 113098125 113098166 -29173278 + (TG)n Simple_repeat Simple_repeat 2 42 0 421 291 52 0 chr9 113098166 113098300 -29173144 + L1MC/D LINE L1 5625 5765 -2043 238 209 45 0 chr9 113098316 113098383 -29173061 + (TA)n Simple_repeat Simple_repeat 2 71 0 25 0 0 0 chr9 113098385 113098410 -29173034 + AT_rich Low_complexity Low_complexity 1 25 0 2051 125 3 3 chr9 113098412 113098699 -29172745 - AluSx SINE Alu -25 287 1 249 254 0 0 chr9 113098986 113099045 -29172399 + (CATA)n Simple_repeat Simple_repeat 4 62 0 661 298 46 26 chr9 113099109 113099214 -29172230 - L1MC4a LINE L1 -1932 5876 5775 2452 97 0 0 chr9 113099214 113099523 -29171921 + AluSc SINE Alu 1 309 0 661 298 46 26 chr9 113099523 113099722 -29171722 - L1MC4a LINE L1 -2033 5775 5566 448 244 93 21 chr9 113099776 113100006 -29171438 - L1MC4a LINE L1 -782 5364 5209 2314 89 0 7 chr9 113100663 113100954 -29170490 - AluSx SINE Alu -21 291 3 25 51 0 0 chr9 113101056 113101095 -29170349 + AT_rich Low_complexity Low_complexity 1 39 0 1312 153 30 25 chr9 113102247 113102483 -29168961 - AluJb SINE Alu -75 237 1 335 278 9 26 chr9 113103269 113103340 -29168104 + (TG)n Simple_repeat Simple_repeat 2 72 -42 1476 163 77 89 chr9 113103340 113103732 -29167712 - MLT1B LTR MaLR -3 387 1 335 278 9 26 chr9 113103732 113103775 -29167669 + (TG)n Simple_repeat Simple_repeat 72 114 0 221 210 16 0 chr9 113105200 113105262 -29166182 + (CA)n Simple_repeat Simple_repeat 1 63 0 249 286 0 16 chr9 113109576 113109664 -29161780 + MIR SINE MIR 37 122 -86 351 0 0 0 chr9 113112184 113112223 -29159221 + (TG)n Simple_repeat Simple_repeat 1 39 0 2040 96 0 28 chr9 113112223 113112505 -29158939 - AluSq SINE Alu -33 280 7 1611 165 114 0 chr9 113112509 113112781 -29158663 - AluSx SINE Alu -9 303 1 1668 156 42 25 chr9 113112781 113113064 -29158380 - AluSx SINE Alu -24 288 1 1855 139 31 11 chr9 113114156 113114443 -29157001 + AluJo SINE Alu 1 293 -19 21 71 0 0 chr9 113114480 113114522 -29156922 + AT_rich Low_complexity Low_complexity 1 42 0 1361 160 157 4 chr9 113115185 113115316 -29156128 + AluJb SINE Alu 1 111 -191 192 40 0 0 chr9 113115316 113115341 -29156103 + (TA)n Simple_repeat Simple_repeat 1 25 0 1361 160 157 4 chr9 113115341 113115471 -29155973 + AluJb SINE Alu 111 302 0 186 192 0 0 chr9 113117208 113117260 -29154184 + (CAG)n Simple_repeat Simple_repeat 1 52 0 380 234 122 0 chr9 113119523 113119630 -29151814 + MER5C DNA MER1_type 5 124 -200 224 253 127 0 chr9 113119654 113119733 -29151711 + MER5C DNA MER1_type 230 318 -6 358 175 0 0 chr9 113119911 113119968 -29151476 - L1MC4 LINE L1 -141 7901 7845 * 1969 220 284 34 chr9 113119967 113120826 -29150618 - L1MC4 LINE L1 -501 7541 6468 378 121 0 96 chr9 113121069 113121152 -29150292 - MLT1A1 LTR MaLR -290 75 1 2234 97 0 64 chr9 113122214 113122544 -29148900 - AluSx SINE Alu -3 309 1 359 328 97 41 chr9 113122603 113122893 -29148551 - L2 LINE L2 -67 3205 2900 1564 167 61 27 chr9 113123291 113123584 -29147860 + AluJo SINE Alu 1 303 -9 959 183 90 115 chr9 113124669 113124992 -29146452 - MER46C DNA MER2_type -23 315 1 414 221 39 29 chr9 113125020 113125124 -29146320 - MIR SINE MIR -138 124 20 2513 67 0 22 chr9 113126040 113126356 -29145088 - AluY SINE Alu -2 309 1 2162 119 7 0 chr9 113127126 113127419 -29144025 + AluSx SINE Alu 7 301 -11 294 268 181 0 chr9 113127468 113127595 -29143849 + MIR SINE MIR 31 180 -82 1236 180 52 26 chr9 113127703 113127936 -29143508 + AluJo SINE Alu 59 297 -15 22 0 0 0 chr9 113129604 113129626 -29141818 + AT_rich Low_complexity Low_complexity 1 22 0 387 129 8 220 chr9 113129755 113129822 -29141622 - MLT1D LTR MaLR 0 505 478 752 140 35 0 chr9 113129822 113129936 -29141508 + FLAM_C SINE Alu 2 119 -14 387 129 8 220 chr9 113129936 113130000 -29141444 - MLT1D LTR MaLR -27 478 402 1597 212 35 12 chr9 113130132 113130477 -29140967 + MLT1A2 LTR MaLR 21 373 -1 * 1643 202 100 8 chr9 113130477 113130836 -29140608 - MLT1D LTR MaLR -113 392 1 318 185 18 3 chr9 113130906 113130972 -29140472 - MIR SINE MIR -119 89 24 359 264 21 74 chr9 113130972 113131164 -29140280 - L1ME4a LINE L1 -201 5920 5739 767 168 8 0 chr9 113131382 113131501 -29139943 - FLAM_C SINE Alu -12 121 2 392 201 63 69 chr9 113131540 113131699 -29139745 - MER103 DNA DNA -1 165 8 2258 107 17 0 chr9 113132106 113132404 -29139040 + AluSx SINE Alu 1 303 -9 290 281 79 18 chr9 113133771 113133885 -29137559 - L2 LINE L2 -6 3307 3187 695 223 70 51 chr9 113134313 113134528 -29136916 - MIR SINE MIR -43 219 1 269 247 86 69 chr9 113134562 113134736 -29136708 + L1MC5 LINE L1 7711 7887 -74 187 324 0 15 chr9 113135002 113135070 -29136374 - L3 LINE CR1 0 1577 1511 202 284 0 40 chr9 113135152 113135226 -29136218 - MIR SINE MIR -118 90 20 266 283 22 11 chr9 113135805 113135897 -29135547 - MER102a DNA MER1_type -2 328 236 208 277 176 14 chr9 113136006 113136154 -29135290 + MIR3 SINE MIR 35 206 -2 559 165 0 102 chr9 113137473 113137542 -29133902 - MER94 DNA DNA -20 114 61 1732 174 3 7 chr9 113137542 113137851 -29133593 - AluJo SINE Alu 0 308 1 559 165 0 102 chr9 113137851 113137907 -29133537 - MER94 DNA DNA -73 61 1 469 278 17 83 chr9 113140241 113140421 -29131023 - MER91A DNA MER1_type 0 196 29 1855 148 0 31 chr9 113142872 113143163 -29128281 - AluJo SINE Alu -30 282 1 21 95 0 0 chr9 113143300 113143363 -29128081 + AT_rich Low_complexity Low_complexity 1 63 0 468 216 79 29 chr9 113143387 113143526 -29127918 - L2 LINE L2 -1 3312 3167 772 296 47 13 chr9 113143745 113144130 -29127314 - L1ME3A LINE L1 -219 5951 5554 26563 30 3 93 chr9 113144287 113148074 -29123370 - L1P LINE L1 -1478 4668 1224 1885 164 5 86 chr9 113148490 113148887 -29122557 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr9 113149364 113149386 -29122058 + (T)n Simple_repeat Simple_repeat 1 22 0 853 219 22 0 chr9 113149487 113149670 -29121774 - MER5A DNA MER1_type -2 187 1 208 214 0 90 chr9 113150410 113150499 -29120945 - MER5B DNA MER1_type 0 178 98 244 221 59 15 chr9 113150642 113150710 -29120734 + L1ME3 LINE L1 5995 6065 -97 303 79 0 0 chr9 113150764 113150802 -29120642 + THE1B LTR MaLR 2 39 -316 2037 145 7 3 chr9 113150915 113151225 -29120219 + THE1B LTR MaLR 54 364 0 202 279 250 0 chr9 113151312 113151416 -29120028 - MER5B DNA MER1_type -48 130 1 2171 124 3 0 chr9 113151854 113152152 -29119292 - AluSx SINE Alu -9 303 5 243 0 0 0 chr9 113153003 113153030 -29118414 + (A)n Simple_repeat Simple_repeat 1 27 0 2198 101 3 17 chr9 113153030 113153318 -29118126 + AluSx SINE Alu 1 284 -28 201 278 71 71 chr9 113153338 113153464 -29117980 + MIR SINE MIR 20 145 -117 2381 123 97 12 chr9 113153783 113154167 -29117277 - MER4C LTR ERV1 -16 449 26 2295 52 72 0 chr9 113154167 113154457 -29116987 - AluY SINE Alu 0 311 1 2381 123 97 12 chr9 113154457 113154486 -29116958 - MER4C LTR ERV1 -439 26 1 1711 122 0 4 chr9 113154892 113155137 -29116307 + AluSg SINE Alu 1 244 -66 962 91 15 8 chr9 113155206 113155338 -29116106 - AluSq/x SINE Alu -179 133 1 1117 104 74 0 chr9 113155339 113155502 -29115942 - MER39B LTR ERV1 -478 175 1 884 160 0 0 chr9 113155570 113155701 -29115743 + FLAM_C SINE Alu 1 131 -12 455 138 64 53 chr9 113155852 113155946 -29115498 - LTR8 LTR ERV1 -596 95 1 898 246 73 60 chr9 113156050 113156203 -29115241 + MLT1J LTR MaLR 3 152 -359 2335 96 0 0 chr9 113156203 113156494 -29114950 - AluSg SINE Alu -19 291 1 898 246 73 60 chr9 113156494 113156641 -29114803 + MLT1J LTR MaLR 152 307 -204 990 280 47 31 chr9 113156655 113156976 -29114468 + MLT1H LTR MaLR 5 330 -219 2219 121 0 3 chr9 113157025 113157331 -29114113 - AluSq SINE Alu -8 305 1 257 229 45 56 chr9 113157400 113157579 -29113865 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 295 138 18 55 chr9 113157590 113157699 -29113745 + (TCTCTG)n Simple_repeat Simple_repeat 4 108 0 331 240 173 57 chr9 113158532 113158710 -29112734 - MIR SINE MIR -66 196 3 457 114 0 23 chr9 113159266 113159395 -29112049 + MER53 DNA DNA 5 189 0 421 194 31 10 chr9 113159567 113159665 -29111779 + L1M3 LINE L1 5669 5768 -400 3967 35 0 0 chr9 113159585 113160049 -29111395 + L1PA4 LINE L1 5689 6152 -3 2331 105 23 0 chr9 113160283 113160636 -29110808 - AluSq SINE Alu 0 360 1 235 163 0 0 chr9 113160651 113160694 -29110750 + MIR SINE MIR 78 120 -142 335 253 40 100 chr9 113160757 113160907 -29110537 - MIR SINE MIR -14 248 108 239 229 49 0 chr9 113161029 113161090 -29110354 - LTR67 LTR ERVL -8 549 486 815 279 84 76 chr9 113161170 113161751 -29109693 + MLT1G1 LTR MaLR 10 595 0 2931 171 17 33 chr9 113162386 113162555 -29108889 - L1MB5 LINE L1 -10 6164 5994 1877 132 21 0 chr9 113162555 113162835 -29108609 + AluSx SINE Alu 9 294 -18 2931 171 17 33 chr9 113162835 113163245 -29108199 - L1MB5 LINE L1 -180 5994 5594 638 265 156 0 chr9 113163669 113163880 -29107564 + MIR SINE MIR 8 251 -11 1862 152 47 7 chr9 113164159 113164456 -29106988 + AluJb SINE Alu 3 311 -1 472 217 108 0 chr9 113164491 113164611 -29106833 - L2 LINE L2 -1 3312 3180 233 293 0 0 chr9 113164691 113164766 -29106678 + MIR SINE MIR 184 258 -4 2055 134 0 13 chr9 113164911 113165216 -29106228 - AluSx SINE Alu -11 301 1 40 17 0 17 chr9 113165216 113165255 -29106189 + AT_rich Low_complexity Low_complexity 1 40 -17 2275 101 0 0 chr9 113165255 113165542 -29105902 - AluSg SINE Alu -23 287 1 40 17 0 17 chr9 113165542 113165560 -29105884 + AT_rich Low_complexity Low_complexity 40 57 0 457 162 0 0 chr9 113165725 113165793 -29105651 + AluJ/FLAM SINE Alu 3 70 -242 599 174 0 0 chr9 113165793 113165891 -29105553 - AluJ/FLAM SINE Alu -213 99 2 458 301 126 15 chr9 113166525 113166731 -29104713 - MIR SINE MIR -15 247 19 2039 100 13 35 chr9 113166962 113167272 -29104172 + AluSx SINE Alu 1 303 -9 351 0 0 0 chr9 113167482 113167521 -29103923 + (CA)n Simple_repeat Simple_repeat 2 40 0 405 225 53 66 chr9 113167586 113167737 -29103707 - MLT1J LTR MaLR -38 473 325 245 217 93 70 chr9 113168837 113168966 -29102478 + MER68 LTR ERV1 340 471 -91 361 131 21 0 chr9 113169691 113169765 -29101679 + Alu SINE Alu 1 54 -254 2059 139 3 3 chr9 113170029 113170331 -29101113 - AluSx SINE Alu -10 302 1 692 286 6 0 chr9 113170450 113170632 -29100812 + MIR SINE MIR 6 188 -74 405 0 0 0 chr9 113170785 113170830 -29100614 + (CA)n Simple_repeat Simple_repeat 1 45 0 240 269 194 0 chr9 113171246 113171339 -29100105 + L2 LINE L2 3199 3309 -4 491 183 116 37 chr9 113171632 113171796 -29099648 - MIR SINE MIR 0 262 86 403 338 30 10 chr9 113172517 113172718 -29098726 - MIR SINE MIR -54 208 4 597 239 6 44 chr9 113173057 113173202 -29098242 + MER5B DNA MER1_type 6 144 -34 1824 166 0 17 chr9 113173202 113173492 -29097952 + AluJb SINE Alu 2 286 -26 597 239 6 44 chr9 113173492 113173526 -29097918 + MER5B DNA MER1_type 144 178 0 2408 94 3 0 chr9 113173588 113173897 -29097547 - AluSg SINE Alu 0 310 1 1395 197 10 47 chr9 113174764 113175064 -29096380 - AluJo SINE Alu -23 289 1 600 250 117 66 chr9 113175527 113175611 -29095833 + L1M4 LINE L1 4815 4893 -1253 604 183 148 0 chr9 113175611 113175726 -29095718 - FLAM_C SINE Alu 0 133 2 600 250 117 66 chr9 113175726 113176100 -29095344 + L1M4 LINE L1 4893 5308 -838 885 128 8 8 chr9 113176100 113176233 -29095211 + FLAM_C SINE Alu 1 133 0 600 250 117 66 chr9 113176233 113176330 -29095114 + L1M4 LINE L1 5308 5399 -747 542 193 72 174 chr9 113176338 113176753 -29094691 - Zaphod DNA AcHobo -1659 2372 2000 538 279 41 25 chr9 113176965 113177162 -29094282 - Zaphod DNA AcHobo -2492 1539 1340 2135 131 120 24 chr9 113177164 113177547 -29093897 + MSTA LTR MaLR 9 428 0 * 2638 212 86 71 chr9 113177547 113177849 -29093595 - Zaphod DNA AcHobo -2699 1332 1036 1687 184 21 10 chr9 113177849 113178137 -29093307 - AluJb SINE Alu -21 291 1 2638 212 86 71 chr9 113178137 113178790 -29092654 - Zaphod DNA AcHobo -2995 1036 359 2384 96 36 33 chr9 113178790 113179153 -29092291 + THE1B LTR MaLR 1 364 0 2638 212 86 71 chr9 113179153 113179219 -29092225 - Zaphod DNA AcHobo -3672 359 295 256 194 104 0 chr9 113179242 113179309 -29092135 - MLT1G1 LTR MaLR 0 595 522 372 276 73 8 chr9 113179516 113179639 -29091805 - MER5A DNA MER1_type -7 182 52 2323 93 3 3 chr9 113180063 113180363 -29091081 - AluSx SINE Alu -12 300 1 1641 124 136 8 chr9 113180375 113180640 -29090804 - AluSg SINE Alu -1 299 1 2430 89 3 0 chr9 113180641 113180944 -29090500 - AluSp SINE Alu -5 308 5 447 150 0 0 chr9 113180964 113181037 -29090407 - tRNA-Arg-CGA tRNA tRNA -3 73 1 367 146 0 0 chr9 113181043 113181098 -29090346 + MER51A LTR ERV1 580 634 0 2163 115 3 10 chr9 113182247 113182561 -29088883 - AluSq SINE Alu -1 312 1 585 264 81 24 chr9 113182569 113182864 -29088580 + L1M4 LINE L1 4737 5048 -1098 224 39 0 0 chr9 113183110 113183136 -29088308 + (A)n Simple_repeat Simple_repeat 1 26 0 444 118 0 0 chr9 113183297 113183365 -29088079 + (T)n Simple_repeat Simple_repeat 1 68 0 295 253 81 10 chr9 113183875 113183974 -29087470 - MIR SINE MIR -111 151 46 423 189 76 68 chr9 113184285 113184334 -29087110 + L1MB7 LINE L1 6039 6086 -98 3129 38 0 0 chr9 113184334 113184724 -29086720 - L1PA3 LINE L1 0 6155 5784 423 189 76 68 chr9 113184724 113184806 -29086638 + L1MB7 LINE L1 6086 6171 -13 270 136 0 0 chr9 113184811 113184855 -29086589 + (A)n Simple_repeat Simple_repeat 1 44 0 634 125 43 164 chr9 113185985 113186193 -29085251 - MER5A DNA MER1_type -3 186 4 2910 10 0 0 chr9 113186578 113186887 -29084557 - AluYa5 SINE Alu -2 309 1 308 244 259 15 chr9 113187005 113187136 -29084308 + MER5B DNA MER1_type 8 170 -8 222 177 16 202 chr9 113187151 113187213 -29084231 - MER5B DNA MER1_type 0 178 149 2083 130 7 0 chr9 113187213 113187498 -29083946 + AluSx SINE Alu 1 287 -25 222 177 16 202 chr9 113187498 113187559 -29083885 - MER5B DNA MER1_type -29 149 78 1081 127 0 6 chr9 113187588 113187745 -29083699 + AluSg/x SINE Alu 140 295 -17 2054 110 4 7 chr9 113187888 113188161 -29083283 - AluSg SINE Alu -38 272 1 180 111 0 0 chr9 113188162 113188189 -29083255 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 330 318 104 0 chr9 113188684 113188885 -29082559 + HsTC2 DNA Tc2 2 223 -1675 * 414 333 25 0 chr9 113188882 113189044 -29082400 + HsTC2 DNA Tc2 499 664 -1234 1323 223 36 72 chr9 113189066 113189163 -29082281 + HsTC2 DNA Tc2 1272 1371 -527 1806 154 27 7 chr9 113189163 113189455 -29081989 + AluJo SINE Alu 1 298 -14 1323 223 36 72 chr9 113189455 113189827 -29081617 + HsTC2 DNA Tc2 1371 1900 2 202 278 218 0 chr9 113189850 113189983 -29081461 - MIR SINE MIR -87 175 14 1081 151 8 2 chr9 113190177 113190429 -29081015 + AluSx SINE Alu 2 299 -13 1947 163 80 67 chr9 113190491 113190938 -29080506 - LTR8A LTR ERV1 0 727 275 1871 142 187 48 chr9 113190938 113191376 -29080068 + LTR18B LTR ERVL 1 499 -115 215 308 62 84 chr9 113191490 113191678 -29079766 - L2 LINE L2 -1072 2242 2062 2169 136 25 11 chr9 113191678 113192045 -29079399 + L1MB2 LINE L1 5796 6167 -4 215 308 62 84 chr9 113192045 113192178 -29079266 - L2 LINE L2 -1252 2062 1928 228 276 146 22 chr9 113192532 113192688 -29078756 - MIR SINE MIR -48 214 37 2388 64 0 29 chr9 113193329 113193640 -29077804 + AluY SINE Alu 1 302 -9 2085 86 0 11 chr9 113194269 113194537 -29076907 + AluSq SINE Alu 1 265 -48 1691 92 0 0 chr9 113194639 113194857 -29076587 - L1P LINE L1 -5926 220 3 22 0 0 30 chr9 113194937 113194958 -29076486 + AT_rich Low_complexity Low_complexity 1 22 -10 2026 110 41 10 chr9 113194958 113195248 -29076196 + AluSg SINE Alu 1 299 -11 22 0 0 30 chr9 113195248 113195259 -29076185 + AT_rich Low_complexity Low_complexity 22 32 0 827 140 7 47 chr9 113195259 113195409 -29076035 - AluSg/x SINE Alu -11 301 158 450 263 82 41 chr9 113195565 113195831 -29075613 + L1ME3A LINE L1 5149 5428 -848 1802 148 12 55 chr9 113195831 113196156 -29075288 + AluSx SINE Alu 1 311 -1 450 263 82 41 chr9 113196156 113196267 -29075177 + L1ME3A LINE L1 5428 5533 -743 911 78 94 0 chr9 113196364 113196525 -29074919 + AluSg/x SINE Alu 150 322 0 248 204 0 0 chr9 113196525 113196569 -29074875 + MER5A DNA MER1_type 63 106 -83 742 297 40 75 chr9 113196602 113196944 -29074500 + L1ME3A LINE L1 5614 5931 -239 2302 122 3 0 chr9 113196944 113197256 -29074188 + AluSp SINE Alu 1 313 0 742 297 40 75 chr9 113197256 113197459 -29073985 + L1ME3A LINE L1 5931 6140 -30 369 156 0 0 chr9 113197972 113198049 -29073395 + C-rich Low_complexity Low_complexity 3 79 0 2275 105 0 20 chr9 113198056 113198362 -29073082 - AluSx SINE Alu -12 300 1 462 208 181 27 chr9 113198955 113199104 -29072340 + MER5B DNA MER1_type 4 175 -3 497 308 163 26 chr9 113199123 113199939 -29071505 + L2 LINE L2 232 1159 -2155 1284 138 76 47 chr9 113200232 113200507 -29070937 - L1MA9 LINE L1 -3 6309 6027 441 149 0 0 chr9 113200508 113200575 -29070869 + AluJ/FLAM SINE Alu 2 68 -244 980 278 184 30 chr9 113200603 113201285 -29070159 + L2 LINE L2 1842 2417 -896 2446 87 0 0 chr9 113201285 113201585 -29069859 + AluSq SINE Alu 1 300 -13 980 278 184 30 chr9 113201585 113202119 -29069325 + L2 LINE L2 2417 3298 -15 630 253 114 0 chr9 113202224 113202426 -29069018 + MIR SINE MIR 12 236 -26 22 35 0 0 chr9 113202836 113202865 -29068579 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr9 113203028 113203060 -29068384 + AT_rich Low_complexity Low_complexity 1 32 0 363 157 0 0 chr9 113203230 113203300 -29068144 + (TA)n Simple_repeat Simple_repeat 2 71 0 968 154 0 25 chr9 113204368 113204530 -29066914 - AluJ SINE Alu -25 287 130 1261 73 85 0 chr9 113204637 113204802 -29066642 - L1P LINE L1 -5954 192 14 333 0 0 0 chr9 113205126 113205163 -29066281 + (TA)n Simple_repeat Simple_repeat 1 37 0 883 150 0 0 chr9 113205167 113205300 -29066144 - AluJ SINE Alu -169 133 1 1800 142 8 0 chr9 113205327 113205587 -29065857 + AluSx SINE Alu 38 299 -13 181 281 67 45 chr9 113205598 113205687 -29065757 + MER5B DNA MER1_type 7 97 -81 2189 123 0 0 chr9 113206548 113206848 -29064596 + AluSx SINE Alu 1 300 -12 5510 136 92 56 chr9 113206936 113208124 -29063320 + Tigger3b DNA MER2_type 2 1231 0 404 288 15 0 chr9 113208194 113208326 -29063118 + MIR SINE MIR 102 235 -27 2153 82 38 51 chr9 113208347 113208663 -29062781 + AluSx SINE Alu 1 312 0 183 239 164 0 chr9 113209335 113209402 -29062042 - MIR SINE MIR -85 123 46 623 269 148 9 chr9 113209588 113209804 -29061640 + MIR SINE MIR 12 257 -5 22 35 0 0 chr9 113210989 113211018 -29060426 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr9 113211094 113211121 -29060323 + (A)n Simple_repeat Simple_repeat 1 27 0 2284 116 0 0 chr9 113211451 113211753 -29059691 + AluSg SINE Alu 1 302 -8 1889 121 8 0 chr9 113212150 113212415 -29059029 - AluSq SINE Alu -9 304 38 207 224 26 13 chr9 113212610 113212686 -29058758 + (CAAA)n Simple_repeat Simple_repeat 2 78 0 2030 126 7 10 chr9 113213746 113214040 -29057404 + AluSq SINE Alu 1 293 -20 234 229 0 33 chr9 113214823 113214884 -29056560 - L2 LINE L2 -7 3306 3248 31 76 0 0 chr9 113216069 113216135 -29055309 + GC_rich Low_complexity Low_complexity 1 66 0 446 274 79 32 chr9 113216684 113216874 -29054570 + MIR SINE MIR 64 262 0 678 287 49 14 chr9 113217790 113218013 -29053431 + MIR SINE MIR 28 258 -4 319 308 77 15 chr9 113218345 113218615 -29052829 - MLT1K LTR MaLR 0 588 240 260 269 55 48 chr9 113218924 113219069 -29052375 - MER5A DNA MER1_type -1 188 43 * 338 272 44 35 chr9 113218974 113219088 -29052356 + MER5A DNA MER1_type 66 180 -9 268 234 39 13 chr9 113219314 113219391 -29052053 - MIR SINE MIR -79 183 105 466 248 0 0 chr9 113220034 113220143 -29051301 + L1ME1 LINE L1 5033 5141 -1005 791 137 29 0 chr9 113220147 113220286 -29051158 + L1MA8 LINE L1 6145 6287 -4 730 256 121 47 chr9 113220378 113220784 -29050660 + MER50 LTR ERV1 1 436 -298 465 111 61 101 chr9 113220814 113220913 -29050531 + MER50 LTR ERV1 640 734 0 604 235 15 73 chr9 113220926 113221186 -29050258 + L1ME1 LINE L1 5122 5366 -780 661 134 98 0 chr9 113221186 113221298 -29050146 + AluSc SINE Alu 172 294 -15 2629 215 77 60 chr9 113221298 113222088 -29049356 + L1ME1 LINE L1 5358 6161 -5 1824 171 46 155 chr9 113222520 113222625 -29048819 + L1MB7 LINE L1 4066 4181 -1965 1877 119 0 26 chr9 113222625 113222894 -29048550 + AluSx SINE Alu 1 262 -50 1824 171 46 155 chr9 113222894 113223281 -29048163 + L1MB7 LINE L1 4181 4440 -1706 1493 132 118 49 chr9 113223281 113223421 -29048023 + AluJb SINE Alu 3 132 -180 2294 76 7 30 chr9 113223421 113223725 -29047719 + AluSx SINE Alu 1 297 -15 1493 132 118 49 chr9 113223725 113223872 -29047572 + AluJb SINE Alu 132 310 -2 1824 171 46 155 chr9 113223872 113224180 -29047264 + L1MB7 LINE L1 4440 4780 -1366 3347 161 82 81 chr9 113224233 113224673 -29046771 + L1MB7 LINE L1 4764 5202 -982 2144 121 3 22 chr9 113224673 113224987 -29046457 + AluSg SINE Alu 1 308 -2 3347 161 82 81 chr9 113224987 113225838 -29045606 + L1MB7 LINE L1 5202 6056 -128 1625 72 17 191 chr9 113225838 113226183 -29045261 + AluYa5 SINE Alu 21 305 -6 3347 161 82 81 chr9 113226183 113226248 -29045196 + L1MB7 LINE L1 6056 6119 -65 242 235 20 0 chr9 113226326 113226377 -29045067 + GA-rich Low_complexity Low_complexity 3 54 0 2494 66 0 0 chr9 113226675 113226978 -29044466 - AluY SINE Alu -8 303 1 1951 140 3 34 chr9 113227167 113227488 -29043956 - AluJb SINE Alu -1 311 1 628 255 0 0 chr9 113228176 113228321 -29043123 + AluJb SINE Alu 160 304 -8 2266 114 0 3 chr9 113228488 113228794 -29042650 + AluSq SINE Alu 1 305 -8 990 280 47 31 chr9 113228843 113229164 -29042280 - MLT1H LTR MaLR -219 330 5 898 246 73 60 chr9 113229178 113229325 -29042119 - MLT1J LTR MaLR -204 307 163 2277 103 0 0 chr9 113229325 113229616 -29041828 + AluSg SINE Alu 1 291 -19 898 246 73 60 chr9 113229616 113229769 -29041675 - MLT1J LTR MaLR -348 163 3 1534 191 102 164 chr9 113229873 113230601 -29040843 + LTR8 LTR ERV1 1 683 -8 582 301 90 12 chr9 113230617 113230939 -29040505 + L2 LINE L2 2596 2942 -372 2264 119 0 7 chr9 113231269 113231571 -29039873 - AluSx SINE Alu -12 300 1 363 291 154 37 chr9 113232447 113232746 -29038698 - MLT1K LTR MaLR -1 587 254 361 301 63 85 chr9 113234029 113234197 -29037247 - LTR67 LTR ERVL -90 467 308 759 174 25 85 chr9 113234197 113234333 -29037111 - MER53 DNA DNA 0 189 67 1706 118 50 105 chr9 113234333 113234656 -29036788 + AluSx SINE Alu 1 305 -7 759 174 25 85 chr9 113234656 113234720 -29036724 - MER53 DNA DNA -122 67 1 361 301 63 85 chr9 113234720 113234870 -29036574 - LTR67 LTR ERVL -249 308 156 321 47 0 0 chr9 113235111 113235154 -29036290 + (TG)n Simple_repeat Simple_repeat 2 44 0 2190 117 0 19 chr9 113235195 113235511 -29035933 + AluSx SINE Alu 1 310 -2 327 242 33 20 chr9 113235530 113235643 -29035801 + MLT1L LTR MaLR 168 283 -305 686 153 0 17 chr9 113235683 113235801 -29035643 + FLAM_C SINE Alu 3 118 -25 308 288 38 30 chr9 113235970 113236102 -29035342 + MLT1L LTR MaLR 479 611 -4 684 281 45 21 chr9 113237059 113237301 -29034143 - MIR SINE MIR -13 249 2 374 277 50 8 chr9 113237859 113237978 -29033466 - L2 LINE L2 -2 3311 3188 2231 132 0 0 chr9 113238077 113238387 -29033057 + AluSx SINE Alu 1 310 -2 677 245 103 98 chr9 113238677 113239073 -29032371 + HsTC2 DNA Tc2 31 1584 -316 294 228 152 0 chr9 113239081 113239173 -29032271 + HsTC2 DNA Tc2 1795 1900 0 494 286 13 26 chr9 113239174 113239328 -29032116 - MIR SINE MIR -109 153 2 2084 137 0 3 chr9 113239533 113239846 -29031598 + AluSx SINE Alu 1 312 0 270 311 126 7 chr9 113239939 113240074 -29031370 - L2 LINE L2 -210 3062 2912 865 136 0 0 chr9 113240108 113240226 -29031218 - FLAM_C SINE Alu -25 118 1 225 288 54 18 chr9 113240250 113240274 -29031170 - L2 LINE L2 -420 2894 2872 465 90 0 0 chr9 113240274 113240341 -29031103 + (TG)n Simple_repeat Simple_repeat 2 68 0 225 288 54 18 chr9 113240341 113240427 -29031017 - L2 LINE L2 -442 2872 2780 502 233 70 47 chr9 113240427 113240599 -29030845 - LTR16A1 LTR ERVL -215 242 67 1771 130 0 0 chr9 113242409 113242655 -29028789 - AluSx SINE Alu -10 302 57 401 61 0 0 chr9 113242655 113242704 -29028740 + Alu SINE Alu 12 60 -251 1685 187 30 0 chr9 113242809 113243109 -29028335 + AluJb SINE Alu 1 309 -3 404 246 161 51 chr9 113243203 113243428 -29028016 - MIR SINE MIR -18 244 3 457 114 0 23 chr9 113243985 113244114 -29027330 + MER53 DNA DNA 5 189 0 3967 35 0 0 chr9 113244304 113244768 -29026676 + L1PA4 LINE L1 5689 6152 -3 2312 108 23 0 chr9 113245002 113245355 -29026089 - AluSq SINE Alu 0 360 1 26 50 0 0 chr9 113245523 113245563 -29025881 + AT_rich Low_complexity Low_complexity 1 40 0 521 109 22 11 chr9 113245575 113245667 -29025777 - L1MC2 LINE L1 -1 6343 6251 965 136 18 24 chr9 113245693 113245862 -29025582 + AluSg/x SINE Alu 135 302 -8 2199 108 7 7 chr9 113245862 113246167 -29025277 + AluSx SINE Alu 1 305 -7 410 187 22 11 chr9 113246167 113246258 -29025186 - MER113 DNA MER1_type? -117 404 313 205 306 0 0 chr9 113246263 113246312 -29025132 + polypurine Low_complexity Low_complexity 2 50 0 463 266 25 35 chr9 113246313 113246512 -29024932 - MER113 DNA MER1_type? -221 300 104 1945 145 3 20 chr9 113246796 113247137 -29024307 - AluJb SINE Alu 0 312 1 299 266 24 10 chr9 113247493 113247589 -29023855 + MIR SINE MIR 45 149 -59 421 157 0 0 chr9 113247595 113247665 -29023779 + AluSq/x SINE Alu 65 134 -179 1240 178 84 44 chr9 113247670 113247945 -29023499 + AluJb SINE Alu 3 288 -14 234 0 0 0 chr9 113248009 113248035 -29023409 + (TG)n Simple_repeat Simple_repeat 1 26 0 475 319 28 11 chr9 113248638 113248820 -29022624 - MER5A DNA MER1_type -4 185 1 1761 159 10 45 chr9 113248913 113249227 -29022217 - AluJb SINE Alu -9 303 1 216 0 0 0 chr9 113249233 113249257 -29022187 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 851 188 58 0 chr9 113250508 113250662 -29020782 - FAM SINE Alu -12 163 1 191 284 49 12 chr9 113250732 113250813 -29020631 + L2 LINE L2 3000 3083 -189 534 172 14 139 chr9 113250875 113250921 -29020523 - L1MD3 LINE L1 0 7995 7945 1913 123 10 52 chr9 113250921 113251229 -29020215 - AluSx SINE Alu -17 295 1 534 172 14 139 chr9 113251229 113251305 -29020139 - L1MD3 LINE L1 -50 7945 7907 1954 152 0 3 chr9 113251305 113251601 -29019843 - AluJb SINE Alu -17 295 1 534 172 14 139 chr9 113251601 113251686 -29019758 - L1MD3 LINE L1 -88 7907 7813 2373 242 149 30 chr9 113252202 113252535 -29018909 + L2 LINE L2 1893 2185 -1129 2168 136 0 0 chr9 113252535 113252837 -29018607 + AluSx SINE Alu 1 302 -10 2373 242 149 30 chr9 113252837 113253175 -29018269 + L2 LINE L2 2185 2481 -833 2148 124 7 3 chr9 113253175 113253482 -29017962 - AluSx SINE Alu -4 308 1 2373 242 149 30 chr9 113253482 113253713 -29017731 + L2 LINE L2 2481 2904 -410 695 320 43 41 chr9 113253843 113253983 -29017461 + L2 LINE L2 2898 3036 -277 3972 134 12 70 chr9 113253983 113254716 -29016728 - LTR8 LTR ERV1 0 691 1 695 320 43 41 chr9 113254716 113254990 -29016454 + L2 LINE L2 3036 3313 0 419 267 83 67 chr9 113255237 113255417 -29016027 + MIR SINE MIR 65 247 -15 306 0 0 0 chr9 113255918 113255952 -29015492 + (TC)n Simple_repeat Simple_repeat 1 34 0 1984 104 31 0 chr9 113255961 113256220 -29015224 - AluSx SINE Alu -40 272 6 1987 156 17 0 chr9 113256250 113256552 -29014892 - AluJb SINE Alu -3 309 3 2018 107 6 64 chr9 113256930 113257257 -29014187 - AluSq SINE Alu -5 308 1 1989 154 0 7 chr9 113257257 113257563 -29013881 - AluSx SINE Alu -8 304 1 192 277 119 40 chr9 113257625 113257726 -29013718 - MIR SINE MIR -79 129 21 194 326 144 0 chr9 113258124 113258256 -29013188 + L2 LINE L2 3122 3272 0 1726 85 0 30 chr9 113258603 113258839 -29012605 - AluSq SINE Alu -1 312 84 1835 148 7 4 chr9 113258844 113259122 -29012322 - AluJo SINE Alu -20 292 14 342 0 0 0 chr9 113259450 113259488 -29011956 + (TA)n Simple_repeat Simple_repeat 2 39 0 2519 81 0 0 chr9 113259489 113259798 -29011646 - AluSg SINE Alu 0 310 2 1990 148 0 10 chr9 113259839 113260143 -29011301 + AluJb SINE Alu 1 301 -11 183 80 0 0 chr9 113260165 113260190 -29011254 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 525 237 40 73 chr9 113260512 113260606 -29010838 + MIR SINE MIR 81 168 -94 964 191 60 25 chr9 113260606 113260805 -29010639 - MER63A DNA MER1_type -3 207 2 525 237 40 73 chr9 113260805 113260887 -29010557 + MIR SINE MIR 168 251 -11 22 56 0 0 chr9 113260928 113260964 -29010480 + AT_rich Low_complexity Low_complexity 1 36 0 209 283 33 0 chr9 113261353 113261413 -29010031 + L2 LINE L2 3240 3301 -12 1767 177 0 35 chr9 113261466 113261808 -29009636 - AluJb SINE Alu 0 312 1 953 141 0 0 chr9 113261808 113261943 -29009501 - AluJb SINE Alu -177 135 1 2003 137 7 0 chr9 113262289 113262581 -29008863 + AluSx SINE Alu 1 294 -18 556 165 90 23 chr9 113263512 113263645 -29007799 + MER104 DNA Tc2 4 145 -35 2186 134 0 0 chr9 113264373 113264678 -29006766 + AluSx SINE Alu 1 305 -7 688 210 237 50 chr9 113264733 113265033 -29006411 - L1ME3A LINE L1 -248 5922 5567 1002 60 22 38 chr9 113265054 113265237 -29006207 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1340 154 84 87 chr9 113265248 113265674 -29005770 - AluSx SINE Alu 0 425 1 450 214 10 29 chr9 113265686 113265789 -29005655 - L1ME3A LINE L1 -608 5556 5456 197 306 126 27 chr9 113265835 113266018 -29005426 + L2 LINE L2 2596 2796 -518 345 163 276 0 chr9 113266083 113266181 -29005263 - L2 LINE L2 0 3313 3189 1698 174 7 42 chr9 113266450 113266760 -29004684 - AluJo SINE Alu -13 299 1 554 128 10 49 chr9 113267065 113267167 -29004277 + MER4A LTR ERV1 1 98 -566 1945 134 9 22 chr9 113267167 113267517 -29003927 + MER4A LTR ERV1 261 664 0 2459 115 248 2 chr9 113267519 113267971 -29003473 + MER4A-int LTR ERV1 1 563 -6035 358 132 8 124 chr9 113268021 113268142 -29003302 + MER4A-int LTR ERV1 727 833 -5765 1475 250 65 6 chr9 113268190 113268542 -29002902 + MER4A-int LTR ERV1 1852 2224 -4107 3140 138 84 35 chr9 113268549 113268837 -29002607 + MER4A-int LTR ERV1 194 467 -6291 2119 137 0 0 chr9 113268837 113269143 -29002301 - AluSx SINE Alu -6 306 1 3140 138 84 35 chr9 113269143 113269391 -29002053 + MER4A-int LTR ERV1 467 756 -6002 271 82 0 102 chr9 113269406 113269455 -29001989 + MER4A-int LTR ERV1 713 756 -6002 4705 107 62 34 chr9 113269470 113269700 -29001744 + MER4A-int LTR ERV1 713 935 -5663 278 50 25 0 chr9 113269700 113269740 -29001704 + (TG)n Simple_repeat Simple_repeat 2 42 0 4705 107 62 34 chr9 113269740 113270456 -29000988 + MER4A-int LTR ERV1 935 2488 -4110 1375 157 72 0 chr9 113270456 113270692 -29000752 - LTR8 LTR ERV1 -438 253 1 2020 91 30 12 chr9 113270692 113271022 -29000422 + MER4A-int LTR ERV1 2737 3072 -3526 242 109 55 0 chr9 113271022 113271077 -29000367 - LTR66 LTR ERVL -167 443 386 201 145 14 29 chr9 113271100 113271169 -29000275 + (TA)n Simple_repeat Simple_repeat 1 68 0 584 77 5 77 chr9 113271186 113271380 -29000064 + (TA)n Simple_repeat Simple_repeat 1 180 0 713 164 0 0 chr9 113271403 113271507 -28999937 - AluSp/q SINE Alu -20 293 190 8502 91 52 39 chr9 113271534 113272405 -28999039 + MER4A-int LTR ERV1 5231 6089 -509 2135 110 10 26 chr9 113272405 113272713 -28998731 - AluSq SINE Alu -10 303 1 8502 91 52 39 chr9 113272713 113272926 -28998518 + MER4A-int LTR ERV1 6089 6298 -300 2123 138 3 0 chr9 113272926 113273231 -28998213 + AluSq SINE Alu 1 306 -7 8502 91 52 39 chr9 113273231 113273493 -28997951 + MER4A-int LTR ERV1 6298 6596 -2 722 81 0 10 chr9 113273501 113273600 -28997844 + MER4A LTR ERV1 1 98 -566 1565 108 8 121 chr9 113273600 113273928 -28997516 + MER4A LTR ERV1 261 549 -61 2639 45 0 0 chr9 113273928 113274239 -28997205 - AluY SINE Alu 0 311 1 1565 108 8 121 chr9 113274239 113274295 -28997149 + MER4A LTR ERV1 549 610 0 2201 92 41 3 chr9 113274612 113274906 -28996538 - AluSq SINE Alu -8 305 1 1226 163 0 30 chr9 113275118 113275321 -28996123 - AluJb SINE Alu -115 197 1 1918 131 0 56 chr9 113275404 113275724 -28995720 - AluSx SINE Alu -10 302 1 27 29 0 0 chr9 113275729 113275763 -28995681 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr9 113275829 113275850 -28995594 + AT_rich Low_complexity Low_complexity 1 21 0 1271 206 14 0 chr9 113276301 113276520 -28994924 - MER58A DNA MER1_type -1 223 2 538 286 56 15 chr9 113277688 113277884 -28993560 + MER68 LTR ERV1 329 532 -30 2338 74 0 7 chr9 113277963 113278259 -28993185 + AluY SINE Alu 1 294 -17 486 114 23 61 chr9 113278260 113278392 -28993052 + MER96B DNA MER1_type? 52 178 -239 352 344 113 11 chr9 113278927 113279113 -28992331 - MIR SINE MIR -27 235 31 2462 129 11 3 chr9 113279708 113280057 -28991387 + THE1B LTR MaLR 13 364 0 277 298 35 26 chr9 113280481 113280595 -28990849 - L3 LINE CR1 -78 1499 1385 22 0 0 0 chr9 113281042 113281064 -28990380 + AT_rich Low_complexity Low_complexity 1 22 0 240 86 0 0 chr9 113282318 113282353 -28989091 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 212 309 140 37 chr9 113282857 113283100 -28988344 - L2 LINE L2 -1294 2020 1753 751 274 231 53 chr9 113283120 113283609 -28987835 - MLT1K LTR MaLR 0 588 13 28 0 0 0 chr9 113283866 113283894 -28987550 + AT_rich Low_complexity Low_complexity 1 28 0 443 311 60 33 chr9 113284037 113284339 -28987105 - L1MC/D LINE L1 -1988 5820 5511 1881 137 0 57 chr9 113284340 113284654 -28986790 + AluSx SINE Alu 3 298 -14 633 257 59 43 chr9 113284713 113284966 -28986478 - MIR SINE MIR -4 258 2 2500 49 3 13 chr9 113285022 113285327 -28986117 - AluY SINE Alu -9 302 1 315 0 0 0 chr9 113286449 113286484 -28984960 + (CA)n Simple_repeat Simple_repeat 1 35 0 1505 157 4 0 chr9 113286592 113286828 -28984616 + L1MB8 LINE L1 5467 5703 -475 2189 122 0 0 chr9 113286835 113287131 -28984313 - AluSq SINE Alu -17 296 1 1377 166 14 29 chr9 113287132 113287410 -28984034 + L1MB8 LINE L1 5825 6098 -80 245 335 161 19 chr9 113287527 113287682 -28983762 - MIR SINE MIR -20 242 66 2216 96 4 0 chr9 113288033 113288313 -28983131 + AluSp SINE Alu 1 281 -32 442 265 25 19 chr9 113288353 113288515 -28982929 + MER117 DNA MER1_type 1 163 -34 366 317 124 5 chr9 113289309 113289495 -28981949 + LTR33A LTR ERVL 5 212 -311 225 349 77 18 chr9 113289941 113290110 -28981334 + L2 LINE L2 2797 2975 -339 1179 214 28 0 chr9 113290142 113290357 -28981087 + MER58A DNA MER1_type 4 224 0 265 303 38 16 chr9 113290378 113290541 -28980903 - L1M4c LINE L1 -745 1998 1628 225 179 51 51 chr9 113291018 113291096 -28980348 + LTR33A LTR ERVL 446 523 0 * 2241 128 6 29 chr9 113291094 113291438 -28980006 - MER1B DNA MER1_type -3 336 1 802 173 8 8 chr9 113291730 113291863 -28979581 - AluSq/x SINE Alu -178 134 2 2098 162 59 53 chr9 113292432 113292663 -28978781 + L1MA10 LINE L1 5837 6065 -269 2017 131 51 45 chr9 113292663 113292998 -28978446 + MER1B DNA MER1_type 1 337 0 2098 162 59 53 chr9 113292998 113293259 -28978185 + L1MA10 LINE L1 6065 6332 -2 921 141 0 15 chr9 113293917 113294052 -28977392 - FLAM_C SINE Alu 0 133 1 812 180 6 44 chr9 113294726 113294909 -28976535 - AluJb SINE Alu 0 312 137 639 272 56 6 chr9 113295019 113295199 -28976245 - MIR SINE MIR -62 200 12 268 303 25 49 chr9 113295234 113295356 -28976088 - MLT1L LTR MaLR -370 245 127 2551 138 6 3 chr9 113295383 113295746 -28975698 + THE1B LTR MaLR 1 364 0 529 307 73 40 chr9 113296065 113296141 -28975303 - L2 LINE L2 -4 3309 3237 216 0 0 0 chr9 113296141 113296165 -28975279 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 529 307 73 40 chr9 113296165 113296391 -28975053 - L2 LINE L2 -76 3237 2997 585 203 149 7 chr9 113297841 113297989 -28973455 - MER58C DNA MER1_type 0 215 47 436 82 0 41 chr9 113298256 113298312 -28973132 + L1MA4A LINE L1 6233 6287 -16 2400 108 44 33 chr9 113298312 113298672 -28972772 + THE1B LTR MaLR 1 364 0 436 82 0 41 chr9 113298672 113298688 -28972756 + L1MA4A LINE L1 6287 6302 -1 8051 27 14 0 chr9 113298688 113299712 -28971732 - L1PA4 LINE L1 -5 6150 5123 1096 162 141 0 chr9 113299928 113300119 -28971325 - MER20 DNA MER1_type 0 219 2 191 36 36 0 chr9 113300972 113301000 -28970444 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 300 257 0 55 chr9 113301066 113301175 -28970269 + A-rich Low_complexity Low_complexity 4 106 0 2229 121 0 13 chr9 113301243 113301556 -28969888 + AluSx SINE Alu 1 309 -3 357 273 0 0 chr9 113301618 113301695 -28969749 + MER5A DNA MER1_type 36 112 -77 907 202 12 6 chr9 113301772 113301945 -28969499 + MER5A DNA MER1_type 16 189 0 1708 181 10 19 chr9 113302419 113302729 -28968715 + AluJb SINE Alu 1 307 -5 2347 90 0 0 chr9 113303432 113303720 -28967724 + AluSg SINE Alu 1 288 -22 860 137 10 142 chr9 113303926 113304131 -28967313 - AluJb SINE Alu -1 311 134 727 234 230 0 chr9 113304437 113304645 -28966799 + Tigger3(Golem) DNA MER2_type 30 285 -2744 285 184 0 0 chr9 113304645 113304694 -28966750 + Tigger2 DNA MER2_type 1 49 -2669 5778 141 22 24 chr9 113304800 113305029 -28966415 + Tigger2 DNA MER2_type 1 229 -2489 2329 109 0 0 chr9 113305029 113305340 -28966104 - AluSq SINE Alu -2 311 1 5778 141 22 24 chr9 113305340 113306084 -28965360 + Tigger2 DNA MER2_type 229 972 -1746 262 88 0 0 chr9 113306086 113306120 -28965324 - MER58A DNA MER1_type -5 219 186 631 209 9 0 chr9 113306122 113306232 -28965212 - MER58A DNA MER1_type 0 122 12 822 126 0 17 chr9 113306270 113306389 -28965055 + FLAM_C SINE Alu 2 118 -25 2111 132 7 0 chr9 113306676 113306972 -28964472 + AluSx SINE Alu 1 298 -14 276 325 12 0 chr9 113307023 113307103 -28964341 + MIR SINE MIR 51 131 -131 1551 204 178 15 chr9 113307183 113307556 -28963888 + MLT2B1 LTR ERVL 43 490 -30 513 0 0 0 chr9 113307556 113307613 -28963831 + (CA)n Simple_repeat Simple_repeat 2 58 0 1551 204 178 15 chr9 113307613 113307650 -28963794 + MLT2B1 LTR ERVL 490 520 0 2203 91 21 3 chr9 113307829 113308116 -28963328 + AluSc SINE Alu 1 292 -17 1584 163 10 43 chr9 113309034 113309335 -28962109 - AluJb SINE Alu -17 295 5 234 300 140 0 chr9 113310423 113310523 -28960921 + MIR SINE MIR 30 143 -65 2138 121 6 13 chr9 113311347 113311660 -28959784 - AluSx SINE Alu 0 312 2 427 155 302 0 chr9 113311687 113311803 -28959641 - MER104 DNA Tc2 -12 168 18 508 279 149 13 chr9 113312237 113312391 -28959053 - MIR SINE MIR -75 187 13 2160 121 0 0 chr9 113312565 113312847 -28958597 + AluSx SINE Alu 20 301 -11 405 245 61 71 chr9 113313048 113313358 -28958086 - L1MC5 LINE L1 -46 7915 7609 198 103 0 0 chr9 113313952 113313981 -28957463 + (TATATG)n Simple_repeat Simple_repeat 5 33 0 2119 115 3 0 chr9 113314057 113314345 -28957099 - AluSq SINE Alu -24 289 1 275 305 200 48 chr9 113314403 113314613 -28956831 - L2 LINE L2 -1 3271 3030 2101 130 122 36 chr9 113315544 113315896 -28955548 + MSTA LTR MaLR 1 392 -36 2148 130 3 0 chr9 113315896 113316197 -28955247 - AluSg SINE Alu -8 302 1 2101 130 122 36 chr9 113316197 113316237 -28955207 + MSTA LTR MaLR 392 427 -1 2240 52 42 14 chr9 113317556 113317843 -28953601 - AluY SINE Alu -16 295 1 2323 179 40 13 chr9 113317991 113318460 -28952984 - L1PB4 LINE L1 0 6156 5675 8228 34 7 0 chr9 113318474 113320253 -28951191 - L1PA4 LINE L1 0 6155 4370 1329 155 18 5 chr9 113320253 113320517 -28950927 - L1PB4 LINE L1 -471 5685 5413 2957 130 18 52 chr9 113321180 113321751 -28949693 + L1MA9 LINE L1 5762 6312 0 326 327 101 52 chr9 113321764 113322012 -28949432 - L1MC/D LINE L1 -2245 5563 5304 2134 140 0 3 chr9 113322443 113322743 -28948701 - AluSx SINE Alu -13 299 1 509 309 121 46 chr9 113322787 113323622 -28947822 - L1MC/D LINE L1 -1335 4811 3902 559 316 93 16 chr9 113323735 113323956 -28947488 + MIR SINE MIR 3 235 -27 1566 154 42 74 chr9 113324544 113324856 -28946588 - AluJb SINE Alu -10 302 1 22 0 0 0 chr9 113325959 113325981 -28945463 + AT_rich Low_complexity Low_complexity 1 22 0 343 262 220 21 chr9 113326420 113326561 -28944883 + MIR3 SINE MIR 33 201 -7 199 246 105 18 chr9 113326771 113326828 -28944616 - L2 LINE L2 -10 3262 3201 1787 167 0 24 chr9 113326834 113327127 -28944317 - AluJo SINE Alu -26 286 1 2103 129 14 0 chr9 113327459 113327753 -28943691 + AluSx SINE Alu 1 298 -14 243 211 77 0 chr9 113328242 113328294 -28943150 + MIR3 SINE MIR 110 165 -43 21 0 0 0 chr9 113329212 113329233 -28942211 + AT_rich Low_complexity Low_complexity 1 21 0 646 168 0 0 chr9 113329252 113329359 -28942085 - U6 snRNA snRNA 0 107 1 186 368 0 0 chr9 113329891 113329948 -28941496 + L2 LINE L2 3006 3062 -251 193 254 16 127 chr9 113330637 113330763 -28940681 - L2 LINE L2 -2 3270 3159 699 316 81 54 chr9 113331122 113331638 -28939806 + L2 LINE L2 2225 2754 -560 413 194 39 47 chr9 113332995 113333124 -28938320 - MER94 DNA DNA 0 134 7 441 274 50 62 chr9 113333342 113333521 -28937923 - L2 LINE L2 0 3313 3137 2343 90 38 3 chr9 113333657 113334001 -28937443 - L1PA13 LINE L1 -3 6160 5805 2061 84 7 10 chr9 113334002 113334028 -28937416 + L1P4 LINE L1 5466 5491 -670 2037 140 0 3 chr9 113334028 113334338 -28937106 + AluSq SINE Alu 1 309 0 2061 84 7 10 chr9 113334338 113334618 -28936826 + L1P4 LINE L1 5491 5772 -389 225 0 0 0 chr9 113335126 113335151 -28936293 + (A)n Simple_repeat Simple_repeat 1 25 0 330 299 10 21 chr9 113335755 113335852 -28935592 + MER5A DNA MER1_type 4 99 -90 2862 134 25 25 chr9 113337220 113337743 -28933701 - L1MA9 LINE L1 -1 6311 5789 225 136 23 0 chr9 113337812 113337856 -28933588 - L1MA9 LINE L1 -389 5779 5735 182 275 25 62 chr9 113337975 113338055 -28933389 + L2 LINE L2 471 547 -2767 1853 37 0 0 chr9 113338112 113338353 -28933091 - L1P LINE L1 -846 5300 5060 1787 48 9 0 chr9 113338354 113338583 -28932861 + L1PA4 LINE L1 5925 6155 0 22 70 0 0 chr9 113338702 113338745 -28932699 + AT_rich Low_complexity Low_complexity 1 43 0 12735 184 72 39 chr9 113340144 113344146 -28927298 - L1P3 LINE L1 -2286 4562 2 205 358 37 9 chr9 113344317 113344426 -28927018 - MIR SINE MIR -123 139 28 2166 124 0 10 chr9 113344634 113344941 -28926503 - AluSx SINE Alu -8 304 1 404 162 0 58 chr9 113345088 113345205 -28926239 + MER5A DNA MER1_type 2 189 0 672 151 62 45 chr9 113347493 113347672 -28923772 - MER53 DNA DNA -6 183 2 306 231 13 13 chr9 113347692 113347770 -28923674 - MIR SINE MIR -112 150 73 381 288 118 13 chr9 113348073 113348226 -28923218 + MER5B DNA MER1_type 2 170 -8 329 158 0 18 chr9 113348288 113348345 -28923099 - MER5B DNA MER1_type -7 171 116 1934 148 3 3 chr9 113348348 113348645 -28922799 + AluSx SINE Alu 2 298 -14 236 174 0 0 chr9 113349615 113349661 -28921783 + L1M1 LINE L1 5783 5828 -477 234 156 0 0 chr9 113349688 113349733 -28921711 + (TA)n Simple_repeat Simple_repeat 2 46 0 305 270 0 22 chr9 113349733 113349822 -28921622 + L1MC4 LINE L1 6614 6700 -1342 234 229 0 0 chr9 113349824 113349894 -28921550 + (TA)n Simple_repeat Simple_repeat 1 70 0 302 159 58 14 chr9 113349902 113349971 -28921473 + L1MCa LINE L1 1996 2067 -4359 303 203 0 0 chr9 113349971 113350050 -28921394 + (TA)n Simple_repeat Simple_repeat 1 79 0 383 84 0 121 chr9 113350052 113350135 -28921309 - L1M2 LINE L1 -504 5787 5715 461 286 7 21 chr9 113350333 113350473 -28920971 - MER5B DNA MER1_type 0 178 41 1060 177 70 40 chr9 113350502 113350874 -28920570 - L1MC5 LINE L1 -58 7903 7521 2252 114 3 3 chr9 113350924 113351232 -28920212 - AluSq SINE Alu -5 308 1 192 296 0 0 chr9 113351338 113351382 -28920062 + MER5B DNA MER1_type 6 49 -129 1483 194 135 35 chr9 113351386 113351795 -28919649 + MLT2B1 LTR ERVL 11 472 -48 189 0 0 0 chr9 113351795 113351816 -28919628 + (TA)n Simple_repeat Simple_repeat 1 21 0 1483 194 135 35 chr9 113351816 113351871 -28919573 + MLT2B1 LTR ERVL 472 520 0 958 212 114 102 chr9 113351871 113352645 -28918799 - L1MC5 LINE L1 -435 7526 6744 198 298 0 0 chr9 113352648 113352695 -28918749 - MER5B DNA MER1_type -111 67 21 42036 38 7 1 chr9 113353060 113359160 -28912284 + L1PA4 LINE L1 14 6152 -3 1951 152 0 3 chr9 113359193 113359495 -28911949 - AluJb SINE Alu -11 301 1 2206 120 7 0 chr9 113360026 113360326 -28911118 - AluSq SINE Alu -9 304 3 39 68 0 0 chr9 113361184 113361258 -28910186 + AT_rich Low_complexity Low_complexity 1 74 0 23 54 0 0 chr9 113361806 113361843 -28909601 + AT_rich Low_complexity Low_complexity 1 37 0 313 306 47 36 chr9 113361895 113362088 -28909356 - L1M4 LINE L1 -1333 4813 4619 212 288 14 14 chr9 113362733 113362806 -28908638 - MIR SINE MIR -15 247 175 2510 78 0 0 chr9 113363092 113363398 -28908046 - AluSc SINE Alu -3 306 1 288 259 56 68 chr9 113363603 113363765 -28907679 - MIR SINE MIR -66 196 37 1918 168 0 3 chr9 113364538 113364842 -28906602 + AluJb SINE Alu 1 303 -9 254 296 0 25 chr9 113365438 113365519 -28905925 - MIR SINE MIR -4 258 180 1918 149 47 10 chr9 113368949 113369250 -28902194 + AluSx SINE Alu 1 312 0 352 318 26 26 chr9 113369666 113369817 -28901627 + L2 LINE L2 3163 3313 0 21 0 0 0 chr9 113370242 113370263 -28901181 + AT_rich Low_complexity Low_complexity 1 21 0 7650 18 5 0 chr9 113372185 113373359 -28898085 + L1PA3 LINE L1 4987 6164 0 329 333 16 23 chr9 113373706 113373835 -28897609 - MIR SINE MIR -101 161 34 476 248 121 0 chr9 113375495 113375644 -28895800 + L1MC4a LINE L1 39 205 -5914 883 270 84 58 chr9 113375728 113376593 -28894851 + L1MC4a LINE L1 489 1417 -4893 1284 181 14 0 chr9 113376593 113376808 -28894636 - MER20 DNA MER1_type 0 219 2 883 270 84 58 chr9 113376808 113376892 -28894552 + L1MC4a LINE L1 1417 1497 -4813 41157 31 21 1 chr9 113376898 113382922 -28888522 + L1HS LINE L1 1 6148 -7 303 113 0 0 chr9 113382932 113382985 -28888459 + (A)n Simple_repeat Simple_repeat 1 53 0 317 309 101 27 chr9 113382985 113383173 -28888271 + L1MC4a LINE L1 1490 1691 -4619 244 260 49 34 chr9 113383376 113383580 -28887864 + L1MC4a LINE L1 5050 5256 -873 363 348 33 17 chr9 113383782 113384201 -28887243 + L1MC4a LINE L1 5464 5694 -459 25 0 0 0 chr9 113384214 113384239 -28887205 + AT_rich Low_complexity Low_complexity 1 25 0 2239 114 3 13 chr9 113384453 113384769 -28886675 - AluSq SINE Alu 0 313 1 261 286 84 26 chr9 113385608 113385762 -28885682 + L1ME4a LINE L1 5956 6118 -3 365 291 113 14 chr9 113386194 113386335 -28885109 - MIR SINE MIR -60 202 48 2062 120 37 17 chr9 113386822 113387121 -28884323 + AluSx SINE Alu 1 305 -7 270 0 0 0 chr9 113388195 113388225 -28883219 + (CA)n Simple_repeat Simple_repeat 2 31 0 1835 156 10 10 chr9 113388586 113388881 -28882563 + AluJb SINE Alu 4 298 -14 195 114 0 0 chr9 113389880 113389915 -28881529 + (T)n Simple_repeat Simple_repeat 1 35 0 246 326 105 9 chr9 113390812 113391156 -28880288 + L1ME LINE L1 5540 5916 -205 260 220 0 0 chr9 113392576 113392626 -28878818 + L2 LINE L2 3241 3290 -23 * 476 202 90 39 chr9 113392624 113392660 -28878784 - L2 LINE L2 0 3313 3280 2177 164 70 5 chr9 113392660 113393062 -28878382 + MSTA LTR MaLR 1 428 0 476 202 90 39 chr9 113393062 113393203 -28878241 - L2 LINE L2 -33 3280 3127 1329 155 18 5 chr9 113393777 113394041 -28877403 + L1PB4 LINE L1 5413 5685 -471 8228 34 0 0 chr9 113394041 113395820 -28875624 + L1PA4 LINE L1 4370 6155 0 2323 179 40 13 chr9 113395834 113396303 -28875141 + L1PB4 LINE L1 5675 6156 0 2697 10 0 10 chr9 113396451 113396756 -28874688 + AluYa5 SINE Alu 1 302 -9 298 290 19 47 chr9 113396863 113396970 -28874474 - MIR SINE MIR -89 119 16 1208 126 30 0 chr9 113397401 113397599 -28873845 + MSTA LTR MaLR 2 205 -223 1626 147 0 0 chr9 113397603 113397841 -28873603 - AluJb SINE Alu -5 307 70 329 140 18 0 chr9 113397960 113398017 -28873427 - AluJb SINE Alu -234 68 11 1105 159 56 9 chr9 113398035 113398249 -28873195 + MSTA LTR MaLR 203 426 0 837 228 108 71 chr9 113398445 113398974 -28872470 + MER39 LTR ERV1 1 703 -4 321 282 78 42 chr9 113399776 113399918 -28871526 - MER5A DNA MER1_type -2 187 41 297 300 79 29 chr9 113399807 113399947 -28871497 + MER5A DNA MER1_type 43 189 0 * 1081 131 31 16 chr9 113400275 113400466 -28870978 + L1MB5 LINE L1 5981 6174 0 2161 120 0 10 chr9 113400526 113400827 -28870617 - AluJb SINE Alu -14 298 1 213 119 0 0 chr9 113400843 113400885 -28870559 + (TA)n Simple_repeat Simple_repeat 2 43 0 1109 44 0 0 chr9 113400885 113401021 -28870423 - L1PA5 LINE L1 -15 6139 6004 451 235 148 7 chr9 113401046 113401195 -28870249 + MIR SINE MIR 93 262 0 517 266 51 19 chr9 113403002 113403160 -28868284 + MIR SINE MIR 43 205 -57 1104 118 52 9 chr9 113403279 113403490 -28867954 + AluSc SINE Alu 88 307 -2 2204 147 17 4 chr9 113403490 113404043 -28867401 - L1P4 LINE L1 -698 5468 4910 3486 124 11 2 chr9 113404043 113404559 -28866885 + L1PA16 LINE L1 5622 6157 -9 374 218 58 11 chr9 113404850 113404937 -28866507 - MIR SINE MIR -113 149 59 255 299 183 0 chr9 113405615 113405752 -28865692 + MER91A DNA MER1_type 29 190 -6 987 188 12 6 chr9 113405776 113405946 -28865498 + MER5A DNA MER1_type 19 189 0 330 318 40 17 chr9 113406939 113407112 -28864332 + MER5B DNA MER1_type 2 178 0 897 253 68 65 chr9 113408678 113409267 -28862177 - L1ME4a LINE L1 -193 5928 5338 2093 133 3 3 chr9 113409839 113410139 -28861305 + AluSx SINE Alu 5 304 -8 216 216 0 0 chr9 113411835 113411886 -28859558 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 582 154 228 19 chr9 113412268 113412430 -28859014 + L1MA9 LINE L1 6082 6277 -35 234 0 0 0 chr9 113412575 113412601 -28858843 + (CAA)n Simple_repeat Simple_repeat 2 27 0 485 125 71 18 chr9 113412928 113413096 -28858348 + GA-rich Low_complexity Low_complexity 2 178 0 1101 125 11 0 chr9 113414264 113414440 -28857004 - L1PB2 LINE L1 0 6151 5974 343 262 178 37 chr9 113414537 113414728 -28856716 - L1ME4a LINE L1 -9 6112 5895 1988 150 0 55 chr9 113414799 113415126 -28856318 - AluSx SINE Alu -3 309 1 459 294 25 41 chr9 113415177 113415422 -28856022 - L1ME4a LINE L1 -347 5774 5534 1586 214 10 44 chr9 113415692 113416012 -28855432 + MLT1A2 LTR MaLR 1 307 -67 2341 87 0 19 chr9 113416012 113416321 -28855123 - AluSq SINE Alu -10 303 1 1586 214 10 44 chr9 113416321 113416387 -28855057 + MLT1A2 LTR MaLR 307 374 0 256 362 36 41 chr9 113418479 113418700 -28852744 + L2 LINE L2 2718 2937 -377 246 345 9 36 chr9 113418867 113418977 -28852467 + L2 LINE L2 3142 3248 -24 2158 128 0 13 chr9 113419072 113419384 -28852060 - AluSg SINE Alu -2 308 1 212 244 25 87 chr9 113420559 113420675 -28850769 - MER5B DNA MER1_type -69 120 4 1874 117 0 0 chr9 113420764 113421020 -28850424 - AluSq SINE Alu -2 311 56 282 206 0 0 chr9 113422283 113422346 -28849098 + (CA)n Simple_repeat Simple_repeat 2 64 0 335 283 11 73 chr9 113422430 113422663 -28848781 - L1ME3A LINE L1 -192 5970 5741 635 257 124 10 chr9 113422916 113423118 -28848326 + MIR SINE MIR 1 225 -37 203 125 25 0 chr9 113423598 113423638 -28847806 + (TAA)n Simple_repeat Simple_repeat 1 41 0 332 243 75 37 chr9 113423670 113423777 -28847667 - MIR SINE MIR -35 227 117 494 250 83 0 chr9 113424062 113424218 -28847226 + L2 LINE L2 1600 1768 -1546 438 313 115 16 chr9 113424840 113425022 -28846422 - MIR SINE MIR -43 219 20 1242 159 220 10 chr9 113425981 113426290 -28845154 - MLT1A2 LTR MaLR 0 374 1 337 286 53 94 chr9 113427145 113427505 -28843939 - L1ME4a LINE L1 -52 6069 5725 331 202 82 0 chr9 113427525 113427620 -28843824 - HsTC2 DNA Tc2 -2 1896 1 415 265 122 20 chr9 113427660 113427856 -28843588 - L1ME4a LINE L1 -2166 5642 5427 2115 123 3 0 chr9 113427857 113428150 -28843294 - AluSq SINE Alu -19 294 1 303 292 39 6 chr9 113428583 113428760 -28842684 + L1MC/D LINE L1 5692 5882 -239 295 126 18 54 chr9 113428803 113428914 -28842530 + (TA)n Simple_repeat Simple_repeat 1 107 0 22 0 0 0 chr9 113429007 113429029 -28842415 + AT_rich Low_complexity Low_complexity 1 22 0 879 274 14 5 chr9 113429151 113429359 -28842085 - MIR SINE MIR -46 216 7 1160 138 0 0 chr9 113429390 113429550 -28841894 - FRAM SINE Alu -16 160 1 23 0 0 0 chr9 113429848 113429871 -28841573 + AT_rich Low_complexity Low_complexity 1 23 0 2610 269 193 34 chr9 113430253 113431546 -28839898 + L2 LINE L2 1 1498 -1816 1184 241 169 37 chr9 113431546 113432277 -28839167 + L2 LINE L2 2466 3313 0 217 156 47 62 chr9 113432594 113432658 -28838786 + MIR SINE MIR 192 254 -8 2285 97 7 7 chr9 113432758 113433068 -28838376 - AluSg SINE Alu 0 310 1 21 0 0 0 chr9 113433972 113433993 -28837451 + AT_rich Low_complexity Low_complexity 1 21 0 1499 198 58 24 chr9 113434479 113434772 -28836672 - AluJo SINE Alu -9 303 1 1823 166 7 0 chr9 113435550 113435861 -28835583 - AluSx SINE Alu 0 313 1 2260 97 7 3 chr9 113436387 113436676 -28834768 - AluSx SINE Alu -22 290 1 6662 70 19 4 chr9 113438347 113439453 -28831991 + L1PA10 LINE L1 5047 6165 -3 234 297 0 44 chr9 113439551 113439642 -28831802 - MIR SINE MIR -109 153 67 309 313 52 22 chr9 113439844 113439978 -28831466 + L2 LINE L2 3174 3311 -2 243 241 0 0 chr9 113440374 113440457 -28830987 + CT-rich Low_complexity Low_complexity 2 84 0 2088 147 10 0 chr9 113440484 113440791 -28830653 - AluSx SINE Alu 0 312 3 192 40 0 0 chr9 113440795 113440820 -28830624 + (TC)n Simple_repeat Simple_repeat 2 26 0 2183 102 7 0 chr9 113440820 113441103 -28830341 - AluSp SINE Alu -28 285 1 406 306 110 32 chr9 113441568 113441787 -28829657 - MIR SINE MIR -21 241 6 800 348 126 29 chr9 113441823 113442428 -28829016 - L2 LINE L2 -669 2645 1915 1809 143 3 55 chr9 113442428 113442735 -28828709 + AluJo SINE Alu 1 291 -21 800 348 126 29 chr9 113442735 113443066 -28828378 - L2 LINE L2 -1399 1915 1618 2695 101 0 6 chr9 113443129 113443495 -28827949 - THE1B LTR MaLR 0 364 1 1540 213 44 7 chr9 113444040 113444453 -28826991 - L1MA4 LINE L1 0 6300 5873 26 0 0 0 chr9 113445012 113445038 -28826406 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr9 113445442 113445469 -28825975 + (TG)n Simple_repeat Simple_repeat 1 27 0 372 345 48 19 chr9 113445928 113446134 -28825310 + HAL1b LINE L1 548 759 -589 22 56 0 0 chr9 113446161 113446197 -28825247 + AT_rich Low_complexity Low_complexity 1 36 0 1603 209 38 87 chr9 113447236 113447303 -28824141 - MLT1D LTR MaLR 0 505 436 2044 104 7 4 chr9 113447303 113447619 -28823825 + AluSg SINE Alu 1 317 0 1603 209 38 87 chr9 113447619 113448081 -28823363 - MLT1D LTR MaLR -69 436 1 261 287 20 10 chr9 113448413 113448514 -28822930 + L1ME LINE L1 5609 5710 -411 595 341 33 33 chr9 113448533 113448899 -28822545 + L2 LINE L2 1004 1369 -1945 1285 161 0 14 chr9 113449051 113449274 -28822170 + MLT1D LTR MaLR 1 220 -285 1950 155 56 29 chr9 113450010 113450549 -28820895 + MLT2A2 LTR ERVL 1 554 0 534 326 127 55 chr9 113450956 113451389 -28820055 + L2 LINE L2 2809 3272 0 253 347 74 25 chr9 113451811 113452214 -28819230 - HAL1 LINE L1 -867 1640 1218 606 166 215 6 chr9 113453772 113453935 -28817509 - MIR SINE MIR -3 259 63 335 186 54 8 chr9 113454643 113454772 -28816672 + (TA)n Simple_repeat Simple_repeat 2 136 0 450 341 103 39 chr9 113454821 113455629 -28815815 - L1 LINE L1 -1651 4495 3626 1970 138 7 7 chr9 113455680 113455978 -28815466 - AluSg SINE Alu -12 298 1 22 56 0 0 chr9 113456008 113456044 -28815400 + AT_rich Low_complexity Low_complexity 1 36 0 371 39 39 0 chr9 113457589 113457641 -28813803 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 2193 86 0 20 chr9 113457644 113457936 -28813508 - AluY SINE Alu -25 286 1 383 294 28 21 chr9 113458094 113458237 -28813207 + MLT1J LTR MaLR 328 471 -40 750 281 276 13 chr9 113458836 113459387 -28812057 + L2 LINE L2 56 751 -2563 3431 70 0 2 chr9 113459396 113459838 -28811606 - L1PA7 LINE L1 -2 6152 5712 1295 61 0 0 chr9 113459838 113460018 -28811426 + L1P LINE L1 5037 5216 -930 428 289 171 11 chr9 113460018 113460205 -28811239 + L2 LINE L2 739 955 -2359 328 237 41 10 chr9 113460218 113460315 -28811129 + L2 LINE L2 1758 1857 -1457 208 234 12 41 chr9 113460369 113460541 -28810903 + GA-rich Low_complexity Low_complexity 1 166 0 2634 61 0 0 chr9 113462175 113462486 -28808958 + AluY SINE Alu 1 311 0 660 159 82 24 chr9 113462794 113462964 -28808480 - MER104 DNA MER2_type 0 180 1 22 0 0 0 chr9 113463155 113463177 -28808267 + AT_rich Low_complexity Low_complexity 1 22 0 852 193 0 7 chr9 113463217 113463367 -28808077 - FRAM SINE Alu -24 152 4 1241 256 102 12 chr9 113463592 113464115 -28807329 + MLT2E LTR ERVL 1 621 -7 464 316 38 21 chr9 113464593 113464916 -28806528 - HAL1b LINE L1 -784 564 377 282 29 0 0 chr9 113465185 113465220 -28806224 + (T)n Simple_repeat Simple_repeat 1 35 0 665 172 43 43 chr9 113465664 113465850 -28805594 + MER53 DNA DNA 3 188 -1 22 88 0 0 chr9 113467003 113467060 -28804384 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr9 113467270 113467293 -28804151 + AT_rich Low_complexity Low_complexity 1 23 0 2367 102 0 3 chr9 113467929 113468243 -28803201 + AluSq SINE Alu 1 313 0 188 290 187 9 chr9 113468739 113468846 -28802598 + MIR SINE MIR 16 141 -121 2592 46 0 0 chr9 113468996 113469299 -28802145 - AluY SINE Alu -8 303 1 361 318 73 7 chr9 113469350 113469501 -28801943 - MIR SINE MIR -49 213 53 979 267 24 4 chr9 113469505 113469752 -28801692 - MIR SINE MIR -10 252 1 379 199 64 12 chr9 113469792 113469963 -28801481 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 373 363 45 16 chr9 113470635 113470880 -28800564 + HAL1b LINE L1 334 585 -763 1265 156 114 59 chr9 113470895 113471030 -28800414 + AluJo SINE Alu 3 129 -183 2144 126 0 13 chr9 113471030 113471339 -28800105 + AluSx SINE Alu 1 305 -7 1265 156 114 59 chr9 113471339 113471492 -28799952 + AluJo SINE Alu 129 307 -5 2158 116 3 0 chr9 113471856 113472150 -28799294 + AluSx SINE Alu 1 295 -17 430 240 91 0 chr9 113472196 113472317 -28799127 - FLAM_A SINE Alu -1 132 1 272 355 57 7 chr9 113472481 113472622 -28798822 + L2 LINE L2 2594 2741 -573 432 259 86 49 chr9 113472811 113472973 -28798471 + MIR SINE MIR 87 254 -8 396 333 109 11 chr9 113473485 113473668 -28797776 + MIR3 SINE MIR 5 205 -3 27 0 0 0 chr9 113473733 113473760 -28797684 + AT_rich Low_complexity Low_complexity 1 27 0 252 279 128 12 chr9 113474592 113474678 -28796766 + MER91C DNA MER1_type 25 120 -20 1026 179 81 15 chr9 113477102 113477439 -28794005 + L1MD1 LINE L1 2407 2803 -3890 * 5905 214 56 37 chr9 113477414 113478433 -28793011 + L1MD1 LINE L1 3372 4370 -2266 1733 180 3 0 chr9 113478433 113478716 -28792728 - AluJb SINE Alu -17 295 12 5905 214 56 37 chr9 113478716 113479485 -28791959 + L1MD1 LINE L1 4370 5122 -1514 804 57 0 65 chr9 113479485 113479608 -28791836 - L1PA8 LINE L1 0 6172 6058 5905 214 56 37 chr9 113479608 113481015 -28790429 + L1MD1 LINE L1 5122 6636 0 394 316 90 10 chr9 113481114 113481402 -28790042 - L1MC/D LINE L1 -2154 5654 5344 2467 102 5 42 chr9 113481410 113481794 -28789650 - L1PB3 LINE L1 -3 6151 5782 308 289 0 0 chr9 113481795 113481885 -28789559 + L1MC4 LINE L1 6614 6703 -1339 6743 173 25 41 chr9 113481894 113484026 -28787418 - L1P5 LINE L1 -363 5791 3697 1911 175 0 0 chr9 113484241 113484549 -28786895 - AluJb SINE Alu -2 310 3 2641 108 8 3 chr9 113485034 113485404 -28786040 + THE1C LTR MaLR 4 375 0 233 325 62 98 chr9 113485840 113486258 -28785186 - L2 LINE L2 -1 3271 2869 720 234 102 30 chr9 113486405 113486602 -28784842 - MER20 DNA MER1_type 0 219 9 2391 134 9 0 chr9 113486602 113486938 -28784506 - MER1B DNA MER1_type 0 339 1 409 282 135 0 chr9 113486983 113487153 -28784291 - MIR SINE MIR -21 241 49 189 264 208 0 chr9 113487334 113487406 -28784038 + L2 LINE L2 3180 3266 -6 549 152 0 0 chr9 113487737 113487829 -28783615 - L1PA13 LINE L1 -4 6159 6068 5456 171 67 3 chr9 113487933 113489000 -28782444 - L1P LINE L1 -1227 4919 3785 199 329 38 0 chr9 113489000 113489079 -28782365 + MIR SINE MIR 65 146 -116 716 246 195 23 chr9 113489090 113489346 -28782098 + Charlie2 DNA MER1_type 42 341 -2441 1039 38 8 0 chr9 113489377 113489508 -28781936 - L1PA5 LINE L1 0 6154 6023 420 91 30 0 chr9 113489530 113489596 -28781848 - L1MB1 LINE L1 -71 6097 6030 2815 227 105 11 chr9 113489601 113490566 -28780878 + Charlie2 DNA MER1_type 1805 2859 -3 568 149 0 21 chr9 113491643 113491737 -28779707 - U6 snRNA snRNA -15 92 1 23 33 0 0 chr9 113491788 113491818 -28779626 + AT_rich Low_complexity Low_complexity 1 30 0 822 266 105 0 chr9 113491828 113492057 -28779387 + MIR SINE MIR 10 262 0 270 81 0 0 chr9 113492080 113492117 -28779327 + (CAT)n Simple_repeat Simple_repeat 3 39 0 250 312 13 13 chr9 113492975 113493052 -28778392 + MIR SINE MIR 20 96 -112 317 226 21 43 chr9 113493668 113493761 -28777683 - L1MC4 LINE L1 -1338 6704 6614 586 188 12 0 chr9 113493762 113493932 -28777512 + (TA)n Simple_repeat Simple_repeat 1 172 0 329 238 79 20 chr9 113493938 113494039 -28777405 - MIR SINE MIR -105 157 51 473 274 32 25 chr9 113494167 113494324 -28777120 + MIR3 SINE MIR 30 187 -21 22 0 0 0 chr9 113494514 113494536 -28776908 + AT_rich Low_complexity Low_complexity 1 22 0 297 364 8 33 chr9 113494576 113494697 -28776747 + L2 LINE L2 3151 3268 -4 458 66 0 0 chr9 113494709 113494770 -28776674 - L1P LINE L1 -748 5406 5346 1235 46 0 0 chr9 113494770 113494916 -28776528 + L1PA5 LINE L1 6000 6151 -3 34 0 0 0 chr9 113494916 113494950 -28776494 + AT_rich Low_complexity Low_complexity 1 34 0 241 294 11 43 chr9 113496027 113496119 -28775325 + GA-rich Low_complexity Low_complexity 1 89 0 4885 141 14 6 chr9 113496575 113497407 -28774037 - L1MA5 LINE L1 -5 6295 5457 966 253 56 75 chr9 113497660 113498036 -28773408 + MLT1H LTR MaLR 181 549 0 1115 174 0 78 chr9 113499305 113499547 -28771897 + AluJb SINE Alu 85 307 -5 199 356 50 38 chr9 113500113 113500273 -28771171 - MIR SINE MIR -12 250 89 23 54 0 0 chr9 113500274 113500311 -28771133 + AT_rich Low_complexity Low_complexity 1 37 0 645 271 4 119 chr9 113500312 113500589 -28770855 - MIR SINE MIR 0 262 18 808 143 0 0 chr9 113500788 113500900 -28770544 + FLAM_C SINE Alu 7 118 -25 21 0 0 0 chr9 113500900 113500921 -28770523 + AT_rich Low_complexity Low_complexity 1 21 0 45 34 0 0 chr9 113501172 113501231 -28770213 + AT_rich Low_complexity Low_complexity 1 59 0 28 0 0 0 chr9 113502406 113502434 -28769010 + AT_rich Low_complexity Low_complexity 1 28 0 2465 76 0 3 chr9 113503380 113503684 -28767760 - AluSc SINE Alu -6 303 1 2266 133 65 11 chr9 113503705 113504167 -28767277 - MER1A DNA MER1_type -3 526 1 420 261 17 8 chr9 113505035 113505154 -28766290 + L2 LINE L2 3181 3300 -13 295 190 17 0 chr9 113505181 113505239 -28766205 + L2 LINE L2 2424 2482 -832 251 290 27 22 chr9 113505470 113505653 -28765791 - L1M4 LINE L1 -1343 4803 4620 311 219 42 73 chr9 113505655 113505751 -28765693 + L1MC/D LINE L1 5602 5694 -427 1013 267 15 8 chr9 113505757 113506070 -28765374 + L1MC4 LINE L1 6660 7024 -836 327 49 0 0 chr9 113506079 113506120 -28765324 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 42 0 0 chr9 113506665 113506689 -28764755 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 2125 118 23 3 chr9 113507841 113508147 -28763297 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 113508198 113508221 -28763223 + AT_rich Low_complexity Low_complexity 1 23 0 309 89 0 0 chr9 113508822 113508867 -28762577 + (TCCC)n Simple_repeat Simple_repeat 3 47 0 2165 131 0 3 chr9 113609519 113609825 -28661619 - AluSc SINE Alu -4 305 1 612 143 19 0 chr9 113610163 113610268 -28661176 - L1MA9 LINE L1 -38 6274 6168 273 333 0 13 chr9 113612006 113612081 -28659363 + MIR SINE MIR 2 75 -187 894 238 141 81 chr9 113612580 113613098 -28658346 - MLT1H LTR MaLR 0 549 1 530 223 11 11 chr9 113613607 113613782 -28657662 + CT-rich Low_complexity Low_complexity 3 177 0 201 125 31 47 chr9 113614584 113614648 -28656796 + (TAA)n Simple_repeat Simple_repeat 2 64 0 284 247 12 0 chr9 113615558 113615639 -28655805 + (TA)n Simple_repeat Simple_repeat 1 82 0 2033 139 0 29 chr9 113618706 113619016 -28652428 + AluSx SINE Alu 1 301 -11 189 0 0 0 chr9 113619016 113619037 -28652407 + (GA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr9 113621101 113621124 -28650320 + AT_rich Low_complexity Low_complexity 1 23 0 212 197 0 15 chr9 113621410 113621476 -28649968 + (TG)n Simple_repeat Simple_repeat 2 66 0 2048 155 3 0 chr9 113621748 113622058 -28649386 + AluSx SINE Alu 1 311 -1 1910 146 10 13 chr9 113622532 113622834 -28648610 - AluJb SINE Alu -11 301 1 4237 158 23 5 chr9 113623023 113624398 -28647046 + L1PA13 LINE L1 4020 5500 -661 1408 154 0 0 chr9 113624398 113624612 -28646832 + AluSg/x SINE Alu 77 290 -22 4137 141 1 17 chr9 113624612 113625305 -28646139 + L1PA13 LINE L1 5475 6156 -7 426 280 16 8 chr9 113625868 113625993 -28645451 - MER45A DNA AcHobo -44 134 9 251 147 0 73 chr9 113626025 113626093 -28645351 + (TTCTC)n Simple_repeat Simple_repeat 3 65 0 2481 42 10 7 chr9 113626265 113626571 -28644873 - AluY SINE Alu -4 307 1 203 276 69 35 chr9 113627048 113627135 -28644309 - MIR SINE MIR -12 250 161 585 286 50 42 chr9 113627146 113627376 -28644068 - MIR SINE MIR -10 252 35 1376 162 12 0 chr9 113627548 113627795 -28643649 + L1MA8 LINE L1 6021 6270 -21 522 252 52 78 chr9 113627829 113628135 -28643309 + Zaphod DNA AcHobo 3265 3562 -469 309 208 19 0 chr9 113628147 113628200 -28643244 - MER58 DNA MER1_type -2366 54 1 359 40 0 20 chr9 113629277 113629327 -28642117 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 2691 175 127 22 chr9 113630087 113630261 -28641183 - MER39 LTR ERV1 0 707 553 2136 121 0 0 chr9 113630261 113630551 -28640893 - AluSx SINE Alu -22 290 1 2691 175 127 22 chr9 113630551 113630996 -28640448 - MER39 LTR ERV1 -154 553 1 221 255 59 0 chr9 113631535 113631586 -28639858 + L2 LINE L2 3219 3272 0 2084 115 24 0 chr9 113632895 113633183 -28638261 + AluSx SINE Alu 3 297 -15 182 191 0 128 chr9 113633726 113633773 -28637671 + MIR3 SINE MIR 114 154 -54 23 68 0 0 chr9 113634860 113634904 -28636540 + AT_rich Low_complexity Low_complexity 1 44 0 40 73 0 0 chr9 113634929 113635011 -28636433 + AT_rich Low_complexity Low_complexity 1 82 0 340 195 16 54 chr9 113635011 113635196 -28636248 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 381 317 0 12 chr9 113635219 113635386 -28636058 - L1M4 LINE L1 -1492 4654 4490 602 229 28 0 chr9 113635692 113635836 -28635608 - L1ME2 LINE L1 -12 6152 6005 204 40 0 0 chr9 113635836 113635861 -28635583 + (T)n Simple_repeat Simple_repeat 1 25 0 1561 94 35 0 chr9 113635864 113636067 -28635377 - AluSq SINE Alu -103 210 1 771 249 38 19 chr9 113636067 113636276 -28635168 - L1ME2 LINE L1 -143 6021 5809 32 57 0 0 chr9 113636760 113636813 -28634631 + AT_rich Low_complexity Low_complexity 1 53 0 26 50 0 0 chr9 113637185 113637225 -28634219 + AT_rich Low_complexity Low_complexity 1 40 0 565 74 0 12 chr9 113637638 113637719 -28633725 - MADE1 DNA Mariner 0 80 1 326 311 11 0 chr9 113637770 113637860 -28633584 - L2 LINE L2 -1 3312 3222 272 290 58 52 chr9 113638426 113638581 -28632863 - HAL1b LINE L1 -863 485 330 24 0 0 0 chr9 113638635 113638659 -28632785 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr9 113639544 113639570 -28631874 + (CA)n Simple_repeat Simple_repeat 2 27 0 23 54 0 0 chr9 113639624 113639661 -28631783 + AT_rich Low_complexity Low_complexity 1 37 0 189 227 68 0 chr9 113642343 113642387 -28629057 - L2 LINE L2 0 3272 3226 487 312 20 25 chr9 113643217 113643419 -28628025 - MIR SINE MIR -58 204 4 246 32 0 0 chr9 113643736 113643767 -28627677 + (TG)n Simple_repeat Simple_repeat 2 32 0 788 349 154 11 chr9 113643839 113644390 -28627054 - L3 LINE CR1 -7 1570 941 458 291 86 61 chr9 113644586 113644899 -28626545 - L1MEc LINE L1 -3925 2471 2151 250 329 50 43 chr9 113645188 113645468 -28625976 - HAL1 LINE L1 -803 1704 1423 506 240 33 0 chr9 113645472 113645593 -28625851 - MER63 DNA MER1_type -235 827 703 235 371 0 17 chr9 113645607 113645723 -28625721 + L2 LINE L2 2693 2806 -508 2348 71 0 0 chr9 113645934 113646253 -28625191 - AluY SINE Alu 0 319 1 1606 134 31 12 chr9 113646264 113646518 -28624926 - MLT1A1 LTR MaLR -3 362 104 186 369 62 54 chr9 113646571 113646812 -28624632 + L2 LINE L2 2978 3220 -52 457 338 75 31 chr9 113648182 113648531 -28622913 - L1M4 LINE L1 -2808 3338 2975 232 127 36 0 chr9 113650470 113650525 -28620919 + (TA)n Simple_repeat Simple_repeat 2 58 0 226 167 0 56 chr9 113650546 113650600 -28620844 - L1MC4 LINE L1 -1339 6703 6653 226 171 14 43 chr9 113650613 113650683 -28620761 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 2291 107 3 0 chr9 113650707 113651016 -28620428 + AluSx SINE Alu 1 310 -2 455 360 42 11 chr9 113651405 113651594 -28619850 - MER91A DNA MER1_type -1 195 1 228 308 56 28 chr9 113651627 113651734 -28619710 - L2 LINE L2 -13 3300 3191 2366 96 0 0 chr9 113651758 113652060 -28619384 + AluY SINE Alu 1 302 -9 244 297 62 23 chr9 113652799 113652927 -28618517 + L2 LINE L2 3117 3249 -64 2072 145 0 0 chr9 113653028 113653332 -28618112 + AluSx SINE Alu 1 304 -8 5470 270 83 28 chr9 113653332 113654177 -28617267 - L2 LINE L2 -94 3219 2422 2277 110 0 0 chr9 113654177 113654469 -28616975 + AluSx SINE Alu 3 294 -18 5470 270 83 28 chr9 113654469 113655775 -28615669 - L2 LINE L2 -891 2422 940 43231 30 21 1 chr9 113655776 113661808 -28609636 + L1HS LINE L1 1 6155 0 21 0 0 0 chr9 113661808 113661829 -28609615 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr9 113661841 113661870 -28609574 + (A)n Simple_repeat Simple_repeat 1 29 0 808 264 54 25 chr9 113661978 113662255 -28609189 - L2 LINE L2 -2368 946 662 346 206 0 0 chr9 113662251 113662314 -28609130 + L2 LINE L2 3251 3313 0 * 186 192 0 0 chr9 113663229 113663281 -28608163 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 229 333 59 29 chr9 113663283 113663385 -28608059 - L2 LINE L2 0 3272 3168 232 211 18 0 chr9 113663461 113663518 -28607926 + (TA)n Simple_repeat Simple_repeat 1 58 0 300 331 82 48 chr9 113664293 113664586 -28606858 - L2 LINE L2 -4 3268 2966 384 219 114 0 chr9 113667862 113667967 -28603477 - MIR SINE MIR 0 262 146 624 40 0 0 chr9 113667973 113668077 -28603367 - AluY SINE Alu 0 311 208 230 284 221 0 chr9 113668080 113668175 -28603269 - MIR SINE MIR -142 120 5 620 287 100 20 chr9 113668732 113669234 -28602210 - L1ME4a LINE L1 -239 5882 5341 200 191 0 44 chr9 113669401 113669469 -28601975 + (TAA)n Simple_repeat Simple_repeat 2 66 0 283 162 40 0 chr9 113669524 113669598 -28601846 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 753 280 71 29 chr9 113669599 113670231 -28601213 - L1ME4a LINE L1 -189 5932 5260 380 268 91 72 chr9 113670238 113670447 -28600997 - L1ME4a LINE L1 -2129 4017 3805 366 293 42 57 chr9 113670659 113670871 -28600573 - HAL1 LINE L1 -7 2500 2292 616 274 58 40 chr9 113672276 113672502 -28598942 + L2 LINE L2 2064 2293 -1021 2810 151 70 15 chr9 113674163 113674692 -28596752 - L1PA16 LINE L1 -1 6165 5608 730 126 9 0 chr9 113674759 113674870 -28596574 - AluSg/x SINE Alu -7 305 194 620 298 32 3 chr9 113675460 113675674 -28595770 + MIR SINE MIR 19 241 -21 496 287 42 8 chr9 113675696 113676014 -28595430 - L1ME LINE L1 -382 5739 5409 28 0 0 0 chr9 113676328 113676356 -28595088 + AT_rich Low_complexity Low_complexity 1 28 0 1933 180 41 90 chr9 113676402 113676958 -28594486 + L1MDa LINE L1 13 541 -5999 1527 131 21 78 chr9 113676968 113677185 -28594259 + L1MDa LINE L1 2189 2376 -4164 2069 137 17 0 chr9 113677185 113677484 -28593960 + AluSx SINE Alu 1 304 -8 1527 131 21 78 chr9 113677484 113677649 -28593795 + L1MDa LINE L1 2376 2549 -3991 490 294 43 21 chr9 113678068 113678255 -28593189 - L2 LINE L2 0 3313 3123 2692 93 25 0 chr9 113678470 113678836 -28592608 - THE1C LTR MaLR 0 375 1 949 258 28 67 chr9 113678836 113679197 -28592247 - LTR16A1 LTR ERVL -7 450 104 38 61 0 0 chr9 113679564 113679630 -28591814 + AT_rich Low_complexity Low_complexity 1 66 0 1845 157 0 36 chr9 113679651 113679956 -28591488 + AluJo SINE Alu 2 295 -17 702 281 29 24 chr9 113680434 113680644 -28590800 + MER115 DNA AcHobo 1 211 -482 218 121 61 0 chr9 113680967 113681033 -28590411 + (TA)n Simple_repeat Simple_repeat 2 71 0 401 277 43 0 chr9 113681072 113681166 -28590278 - MIR SINE MIR -146 116 19 217 132 0 0 chr9 113681255 113681293 -28590151 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 189 362 31 39 chr9 113681380 113681507 -28589937 - L2 LINE L2 -188 3084 2959 2149 94 3 17 chr9 113681669 113681967 -28589477 + AluSg SINE Alu 1 294 -16 2387 93 0 0 chr9 113682971 113683272 -28588172 + AluSc SINE Alu 1 301 -8 341 311 41 75 chr9 113686349 113686642 -28584802 + HAL1 LINE L1 830 1112 -1395 17599 124 25 18 chr9 113686652 113687484 -28583960 + L1M1 LINE L1 606 1430 -6135 2335 89 0 3 chr9 113687484 113687786 -28583658 - AluY SINE Alu -10 301 1 17599 124 25 18 chr9 113687786 113689845 -28581599 + L1M1 LINE L1 1430 3519 -4046 4418 77 20 6 chr9 113689879 113690512 -28580932 + L1MA3 LINE L1 5664 6305 0 674 264 51 57 chr9 113690822 113690927 -28580517 + L2 LINE L2 3001 3105 -208 6186 128 18 16 chr9 113690927 113691895 -28579549 + LTR5 LTR ERVK 1 969 0 674 264 51 57 chr9 113691895 113691916 -28579528 + L2 LINE L2 3105 3125 -188 2298 100 24 40 chr9 113691916 113692286 -28579158 - THE1B LTR MaLR 0 364 1 674 264 51 57 chr9 113692286 113692472 -28578972 + L2 LINE L2 3125 3312 -1 1251 54 6 24 chr9 113694398 113694565 -28576879 + AluSg/x SINE Alu 144 307 -2 1273 90 21 0 chr9 113694586 113694775 -28576669 + LTR1 LTR ERV1 381 573 -212 3621 127 58 90 chr9 113694864 113695675 -28575769 - LTR1 LTR ERV1 0 785 1 281 219 0 0 chr9 113697618 113697682 -28573762 + L1M4 LINE L1 4730 4793 -1353 195 42 0 0 chr9 113697931 113697955 -28573489 + (A)n Simple_repeat Simple_repeat 1 24 0 32 67 0 0 chr9 113698911 113698971 -28572473 + AT_rich Low_complexity Low_complexity 1 60 0 795 255 36 0 chr9 113698998 113699190 -28572254 - MIR SINE MIR 0 262 64 573 181 10 14 chr9 113699284 113699443 -28572001 - L1MB8 LINE L1 -30 6148 5986 729 303 21 0 chr9 113699468 113699656 -28571788 - MIR SINE MIR -67 195 4 309 317 25 8 chr9 113699664 113699784 -28571660 + L1M4 LINE L1 3766 3887 -2259 246 315 11 22 chr9 113700947 113701039 -28570405 + MIR SINE MIR 24 114 -94 * 385 326 176 11 chr9 113701033 113701386 -28570058 + L2 LINE L2 1861 2271 -1043 204 326 0 0 chr9 113701474 113701523 -28569921 - MER5A DNA MER1_type -132 57 9 200 333 124 17 chr9 113701829 113702063 -28569381 + L2 LINE L2 2804 3062 -210 231 262 0 16 chr9 113702134 113702195 -28569249 + MLT1H LTR MaLR 134 193 -356 230 0 33 0 chr9 113702885 113702915 -28568529 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 679 194 72 14 chr9 113703504 113703672 -28567772 + AluJb SINE Alu 138 313 0 2382 63 3 31 chr9 113703695 113704013 -28567431 + AluY SINE Alu 1 309 -2 184 169 72 133 chr9 113704666 113704749 -28566695 - L3b LINE CR1 -283 1300 1223 4782 87 11 0 chr9 113705769 113706414 -28565030 - L1PA10 LINE L1 -4 6164 5513 198 103 0 0 chr9 113706676 113706705 -28564739 + (CA)n Simple_repeat Simple_repeat 2 30 0 2443 116 80 5 chr9 113708346 113708744 -28562700 + MSTA LTR MaLR 1 428 0 1462 197 17 29 chr9 113709219 113709569 -28561875 + L1MC3 LINE L1 7434 7779 -6 1330 306 123 38 chr9 113709574 113710340 -28561104 - L2 LINE L2 -659 2655 1825 2240 121 0 7 chr9 113710370 113710676 -28560768 + AluSx SINE Alu 9 312 0 187 352 104 0 chr9 113710691 113710816 -28560628 - L2 LINE L2 -1480 1834 1697 24 32 0 0 chr9 113711445 113711476 -28559968 + AT_rich Low_complexity Low_complexity 1 31 0 595 315 89 31 chr9 113711899 113712258 -28559186 + L1ME LINE L1 2334 2713 -3433 462 318 73 37 chr9 113712254 113712609 -28558835 + HAL1 LINE L1 1410 1777 -730 * 484 259 151 33 chr9 113714069 113714374 -28557070 + L1ME LINE L1 5384 5747 -374 1895 158 0 0 chr9 113714374 113714680 -28556764 + AluJb SINE Alu 11 316 0 484 259 151 33 chr9 113714680 113714763 -28556681 + L1ME LINE L1 5747 5819 -302 668 158 14 7 chr9 113715458 113715597 -28555847 - LTR37A LTR ERV1 -7 419 280 624 197 57 31 chr9 113715744 113715972 -28555472 + MER20B DNA MER1_type 550 783 0 242 333 16 16 chr9 113716711 113716840 -28554604 + LTR67 LTR ERVL 428 556 -1 195 100 0 0 chr9 113717489 113717519 -28553925 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 466 219 183 7 chr9 113717786 113717923 -28553521 - MER5A DNA MER1_type 0 189 29 356 319 60 87 chr9 113718012 113718482 -28552962 + L2 LINE L2 440 896 -2418 741 243 23 23 chr9 113718502 113718679 -28552765 + MER45A DNA AcHobo 2 178 0 1938 130 27 0 chr9 113718722 113719015 -28552429 - AluSq SINE Alu -6 307 7 340 354 46 8 chr9 113719639 113719769 -28551675 + HAL1 LINE L1 816 950 -1557 753 236 29 0 chr9 113719903 113720077 -28551367 - MLT1G LTR MaLR -2 588 410 2252 254 60 21 chr9 113720131 113720812 -28550632 - MER21B LTR ERV1 -58 805 98 1264 344 150 36 chr9 113721240 113722751 -28548693 + L2 LINE L2 1122 2804 -510 182 375 62 0 chr9 113722848 113722960 -28548484 + L2 LINE L2 2934 3052 -220 406 96 0 0 chr9 113723022 113723074 -28548370 + MER51D LTR ERV1 500 551 -106 24 0 0 0 chr9 113723074 113723098 -28548346 + AT_rich Low_complexity Low_complexity 1 24 0 269 340 107 10 chr9 113723114 113723217 -28548227 + L2 LINE L2 3145 3257 -15 304 275 11 79 chr9 113723459 113723637 -28547807 - MLT1J LTR MaLR -235 276 111 21 71 0 0 chr9 113723783 113723825 -28547619 + AT_rich Low_complexity Low_complexity 1 42 0 2162 120 3 0 chr9 113723976 113724277 -28547167 + AluSx SINE Alu 1 302 -10 231 170 0 0 chr9 113724360 113724407 -28547037 + L1MC3 LINE L1 6599 6645 -1140 203 30 0 61 chr9 113724560 113724593 -28546851 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 385 337 53 16 chr9 113724741 113724931 -28546513 - L2 LINE L2 -1009 2305 2109 2130 127 30 30 chr9 113724957 113725328 -28546116 + THE1C LTR MaLR 5 375 0 10137 109 48 15 chr9 113725328 113725683 -28545761 + THE1C-int LTR MaLR 1 343 -1237 2271 108 0 0 chr9 113725683 113725979 -28545465 - AluSc SINE Alu -10 299 4 10137 109 48 15 chr9 113725979 113727153 -28544291 + THE1C-int LTR MaLR 343 1580 0 2221 140 19 19 chr9 113727153 113727524 -28543920 + THE1C LTR MaLR 1 371 -4 524 361 3 10 chr9 113727572 113727885 -28543559 + MLT1F-int LTR MaLR 266 576 -795 328 309 30 60 chr9 113728106 113728274 -28543170 + MLT1F-int LTR MaLR 701 863 -508 257 249 86 103 chr9 113728607 113728840 -28542604 + MLT1F-int LTR MaLR 1136 1364 -7 872 243 19 10 chr9 113728847 113729053 -28542391 + MLT1F LTR MaLR 1 208 -334 488 90 0 64 chr9 113729053 113729131 -28542313 + MER31B LTR ERV1 1 73 -393 2615 146 26 0 chr9 113729213 113729638 -28541806 - L1MC1 LINE L1 -428 5905 5470 4559 229 66 7 chr9 113729669 113731025 -28540419 - L1MC1 LINE L1 -1870 4276 2841 294 314 41 0 chr9 113731051 113731174 -28540270 + L1ME4a LINE L1 5471 5582 -539 254 305 159 46 chr9 113731255 113731335 -28540109 - MLT1J1 LTR MaLR -2 444 374 2916 111 22 15 chr9 113731335 113731795 -28539649 - MER4C LTR ERV1 0 465 3 254 305 159 46 chr9 113731795 113732085 -28539359 - MLT1J1 LTR MaLR -72 374 32 241 299 291 31 chr9 113732386 113732771 -28538673 + L2 LINE L2 2229 2713 -601 231 327 92 40 chr9 113733086 113733358 -28538086 + L2 LINE L2 3028 3313 0 194 324 59 29 chr9 113733634 113733736 -28537708 - L2 LINE L2 -48 3265 3161 2375 82 3 3 chr9 113734372 113734676 -28536768 + AluY SINE Alu 1 304 -7 1314 207 36 4 chr9 113734951 113735231 -28536213 + L1MD1 LINE L1 5946 6234 -8 2243 224 95 47 chr9 113735240 113736075 -28535369 + L1MC4 LINE L1 7011 7885 -157 1410 201 83 25 chr9 113736298 113736612 -28534832 - MER58B DNA MER1_type 0 341 10 23 54 0 0 chr9 113736702 113736739 -28534705 + AT_rich Low_complexity Low_complexity 1 37 0 735 242 81 13 chr9 113738805 113739115 -28532329 + L1ME4a LINE L1 5635 5965 -156 561 253 71 18 chr9 113740798 113740968 -28530476 + MIR SINE MIR 15 193 -69 674 295 36 18 chr9 113741084 113741308 -28530136 - MIR SINE MIR -14 248 21 185 232 18 80 chr9 113743291 113743403 -28528041 + MIR SINE MIR 118 222 -40 2329 98 0 3 chr9 113743813 113744120 -28527324 + AluSx SINE Alu 1 306 -6 240 235 20 88 chr9 113744241 113744343 -28527101 - MER5B DNA MER1_type -6 172 78 235 346 134 34 chr9 113744382 113744703 -28526741 - L2 LINE L2 -661 2653 2301 211 313 42 31 chr9 113745351 113745447 -28525997 + MIR SINE MIR 117 213 -49 753 291 153 48 chr9 113746341 113747026 -28524418 + L2 LINE L2 2559 3309 -4 226 245 11 85 chr9 113747212 113747306 -28524138 + HAL1 LINE L1 1538 1624 -883 1968 142 14 0 chr9 113747718 113748014 -28523430 - AluSx SINE Alu -12 300 1 344 293 116 31 chr9 113748047 113748306 -28523138 + L1ME1 LINE L1 2014 2254 -3961 305 211 232 0 chr9 113748687 113748782 -28522662 - HAL1 LINE L1 -924 1583 1467 339 349 123 44 chr9 113748900 113749218 -28522226 + L2 LINE L2 2929 3271 -1 313 339 23 8 chr9 113749556 113749686 -28521758 - L1MEd LINE L1 -5021 1098 967 2216 110 0 13 chr9 113750459 113750594 -28520850 + AluSq SINE Alu 1 136 -177 2140 134 0 0 chr9 113750594 113750892 -28520552 + AluSq SINE Alu 1 298 -15 2216 110 0 13 chr9 113750892 113751057 -28520387 + AluSq SINE Alu 136 297 -16 180 176 0 0 chr9 113751201 113751235 -28520209 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr9 113751479 113751500 -28519944 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr9 113752011 113752049 -28519395 + AT_rich Low_complexity Low_complexity 1 38 0 351 250 93 12 chr9 113752520 113752692 -28518752 + L1MC/D LINE L1 5621 5806 -2002 260 233 15 113 chr9 113753217 113753350 -28518094 - L2 LINE L2 -61 3252 3133 402 314 217 0 chr9 113753357 113753564 -28517880 - L2 LINE L2 -645 2669 2418 350 272 163 7 chr9 113753564 113753711 -28517733 - L2 LINE L2 -1398 1916 1747 2392 81 10 0 chr9 113753758 113754066 -28517378 + AluY SINE Alu 1 311 0 342 335 65 45 chr9 113754750 113755195 -28516249 + L1ME1 LINE L1 3331 3784 -2431 349 277 188 32 chr9 113755571 113755931 -28515513 + L1ME1 LINE L1 3995 4412 -1803 296 262 29 19 chr9 113756004 113756107 -28515337 + L1ME1 LINE L1 4556 4659 -1556 236 319 71 0 chr9 113756134 113756247 -28515197 + L1ME1 LINE L1 4791 4911 -1304 2278 226 29 4 chr9 113756371 113756915 -28514529 + L1ME1 LINE L1 5358 5915 -320 2040 107 4 0 chr9 113757063 113757333 -28514111 + AluSg SINE Alu 1 271 -39 580 197 15 5 chr9 113757335 113757543 -28513901 + GA-rich Low_complexity Low_complexity 1 210 0 691 275 128 29 chr9 113757804 113758259 -28513185 + L1ME4a LINE L1 5513 6012 -109 23 33 0 0 chr9 113758709 113758739 -28512705 + AT_rich Low_complexity Low_complexity 1 30 0 473 335 39 6 chr9 113758947 113759129 -28512315 + MIR SINE MIR 36 223 -39 1550 201 10 17 chr9 113759414 113759712 -28511732 + AluJb SINE Alu 4 299 -13 2485 50 0 0 chr9 113761465 113761748 -28509696 - AluY SINE Alu -12 299 17 2122 133 33 25 chr9 113761807 113762168 -28509276 + THE1B LTR MaLR 1 364 0 263 191 0 0 chr9 113763364 113763406 -28508038 + MIR SINE MIR 108 149 -59 182 294 55 46 chr9 113764039 113764148 -28507296 - L2 LINE L2 -1 3312 3203 642 237 160 0 chr9 113764275 113764431 -28507013 - MER5A DNA MER1_type 0 189 9 778 212 12 29 chr9 113764483 113764653 -28506791 - MER20 DNA MER1_type -31 188 22 1287 183 32 12 chr9 113764729 113764975 -28506469 - MLT1D LTR MaLR 0 505 255 334 196 94 35 chr9 113764975 113765096 -28506348 - MLT1D LTR MaLR -361 144 2 2611 82 34 6 chr9 113766057 113766411 -28505033 - THE1B LTR MaLR 0 364 1 4030 217 54 51 chr9 113766608 113766941 -28504503 + L1MDb LINE L1 6 337 -6069 2567 80 39 3 chr9 113766941 113767303 -28504141 + THE1C LTR MaLR 1 375 0 4030 217 54 51 chr9 113767303 113768014 -28503430 + L1MDb LINE L1 337 1045 -5361 637 156 0 18 chr9 113768014 113768123 -28503321 + U6 snRNA snRNA 1 107 0 4030 217 54 51 chr9 113768123 113769206 -28502238 + L1MDb LINE L1 1045 2286 -4120 2094 111 0 32 chr9 113770015 113770330 -28501114 - AluSg SINE Alu -5 305 1 351 254 145 32 chr9 113770483 113770690 -28500754 + MIR SINE MIR 28 261 -1 318 307 40 27 chr9 113772093 113772243 -28499201 + HAL1b LINE L1 331 482 -866 369 0 0 0 chr9 113772594 113772635 -28498809 + (CA)n Simple_repeat Simple_repeat 2 42 0 40 73 0 0 chr9 113772856 113772938 -28498506 + AT_rich Low_complexity Low_complexity 1 82 0 212 192 77 0 chr9 113772960 113773038 -28498406 + (TTAA)n Simple_repeat Simple_repeat 2 85 0 21 0 0 0 chr9 113773058 113773079 -28498365 + AT_rich Low_complexity Low_complexity 1 21 0 2277 173 55 7 chr9 113773549 113773989 -28497455 + LOR1b LTR ERV1 1 461 0 516 105 0 40 chr9 113774069 113774145 -28497299 + LOR1a LTR ERV1 425 497 0 1035 153 34 0 chr9 113774203 113774380 -28497064 + Tigger1 DNA MER2_type 49 231 -2187 1794 161 0 11 chr9 113774407 113774726 -28496718 - AluJb SINE Alu 0 316 1 8777 109 19 65 chr9 113774784 113775943 -28495501 + Tigger1 DNA MER2_type 1005 2083 -335 1609 188 18 0 chr9 113775943 113776225 -28495219 + AluJo SINE Alu 2 288 -24 8777 109 19 65 chr9 113776225 113776547 -28494897 + Tigger1 DNA MER2_type 2083 2418 0 198 294 105 42 chr9 113777664 113777807 -28493637 - MIR SINE MIR -63 199 48 254 264 14 0 chr9 113778175 113778247 -28493197 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 2385 104 30 33 chr9 113778894 113779259 -28492185 - THE1B LTR MaLR 0 364 1 2019 138 0 28 chr9 113779932 113780250 -28491194 + AluSx SINE Alu 1 309 -3 249 286 0 26 chr9 113780305 113780382 -28491062 + (CATA)n Simple_repeat Simple_repeat 3 77 0 639 269 55 36 chr9 113780798 113781051 -28490393 - MIR SINE MIR -3 259 2 1964 134 0 37 chr9 113781733 113782032 -28489412 + AluSq SINE Alu 1 288 -25 1472 192 52 0 chr9 113782590 113782749 -28488695 - AluJb SINE Alu -22 290 110 215 31 31 0 chr9 113782749 113782781 -28488663 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1472 192 52 0 chr9 113782781 113782892 -28488552 - AluJb SINE Alu -202 110 6 1328 243 112 66 chr9 113783600 113784225 -28487219 + MLT1E1 LTR MaLR 1 654 0 262 342 87 0 chr9 113785289 113785438 -28486006 + MIR SINE MIR 1 162 -100 1435 193 7 44 chr9 113785518 113785844 -28485600 + AluJo SINE Alu 1 315 0 625 181 0 0 chr9 113785847 113785952 -28485492 + AluJb SINE Alu 179 283 -29 336 301 122 0 chr9 113786125 113786248 -28485196 - MIR SINE MIR -21 241 104 2091 204 63 47 chr9 113786846 113787399 -28484045 + MER119 DNA MER1_type 5 566 -17 338 0 24 0 chr9 113787493 113787535 -28483909 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1472 75 0 0 chr9 113787535 113787722 -28483722 - L1PA7 LINE L1 -18 6136 5950 2388 120 5 8 chr9 113787964 113788331 -28483113 + MER47A DNA MER2_type 1 366 0 321 346 16 38 chr9 113788336 113788521 -28482923 - MIR SINE MIR -76 186 6 347 301 155 5 chr9 113788866 113789079 -28482365 + L1ME4a LINE L1 5670 5914 -207 726 199 0 8 chr9 113789228 113789359 -28482085 + FLAM_A SINE Alu 1 130 -3 229 136 30 30 chr9 113789895 113789961 -28481483 + (TA)n Simple_repeat Simple_repeat 2 67 0 182 313 50 12 chr9 113789961 113790041 -28481403 + L3 LINE CR1 1402 1484 -93 368 304 60 56 chr9 113790412 113790592 -28480852 - MIR SINE MIR -10 252 69 2480 66 0 0 chr9 113790592 113790897 -28480547 - AluY SINE Alu -6 305 1 368 304 60 56 chr9 113790897 113790966 -28480478 - MIR SINE MIR -193 69 2 470 234 22 15 chr9 113791616 113791753 -28479691 - MER5A DNA MER1_type -51 138 1 352 290 40 10 chr9 113791761 113791861 -28479583 - MIR SINE MIR -57 151 49 276 266 148 40 chr9 113791961 113792136 -28479308 - MIR SINE MIR -10 252 58 204 125 0 0 chr9 113793273 113793305 -28478139 + (CA)n Simple_repeat Simple_repeat 2 33 0 405 0 0 0 chr9 113794376 113794421 -28477023 + (TG)n Simple_repeat Simple_repeat 2 46 0 529 103 0 41 chr9 113794425 113794522 -28476922 - MER53 DNA DNA -2 187 95 2090 106 30 7 chr9 113794914 113795216 -28476228 + AluSp SINE Alu 3 311 -2 2027 98 46 0 chr9 113795323 113795608 -28475836 + AluSp SINE Alu 1 298 -15 4315 27 11 0 chr9 113796163 113796683 -28474761 - L1P LINE L1 -951 5195 4670 220 182 377 0 chr9 113796889 113796966 -28474478 - L2 LINE L2 -6 3307 3202 2149 145 3 26 chr9 113797230 113797575 -28473869 + MER1B DNA MER1_type 1 337 0 509 320 61 35 chr9 113798075 113798303 -28473141 - MIR SINE MIR -17 245 12 710 120 0 0 chr9 113799083 113799183 -28472261 + HY3 scRNA scRNA 1 100 -1 256 296 144 16 chr9 113799347 113799472 -28471972 - MIR3 SINE MIR -31 177 37 282 29 0 0 chr9 113799487 113799522 -28471922 + (CA)n Simple_repeat Simple_repeat 2 36 0 184 30 61 0 chr9 113799522 113799555 -28471889 + GA-rich Low_complexity Low_complexity 1 35 0 439 298 77 17 chr9 113799889 113800070 -28471374 + MIR3 SINE MIR 3 194 -14 791 188 0 0 chr9 113800184 113800317 -28471127 + FLAM_C SINE Alu 1 133 0 452 280 30 30 chr9 113800342 113800474 -28470970 - MER94 DNA DNA -1 133 2 423 261 69 15 chr9 113801098 113801228 -28470216 + MIR SINE MIR 14 150 -112 534 231 6 70 chr9 113802077 113802233 -28469211 + MIR SINE MIR 30 175 -87 322 253 58 71 chr9 113802748 113802902 -28468542 - L2 LINE L2 0 3313 3162 1002 214 64 157 chr9 113803028 113803251 -28468193 + MER66A LTR ERV1 73 237 -241 1685 172 0 63 chr9 113803251 113803570 -28467874 + AluJb SINE Alu 3 301 -11 1002 214 64 157 chr9 113803570 113803782 -28467662 + MER66A LTR ERV1 237 467 -11 244 250 171 0 chr9 113805288 113805376 -28466068 + L2 LINE L2 3144 3246 -26 246 145 60 12 chr9 113807744 113807827 -28463617 + (TA)n Simple_repeat Simple_repeat 1 87 0 2286 97 3 19 chr9 113808259 113808567 -28462877 + AluSq SINE Alu 5 307 -6 231 228 94 94 chr9 113808757 113808776 -28462668 + MER5A DNA MER1_type 4 22 -167 493 185 235 9 chr9 113808776 113808906 -28462538 - MER5A DNA MER1_type 0 178 21 243 303 20 40 chr9 113808909 113809008 -28462436 + L2 LINE L2 3150 3246 -67 309 289 0 0 chr9 113809522 113809598 -28461846 + MIR3 SINE MIR 120 195 -13 226 203 153 0 chr9 113809764 113809823 -28461621 + LTR2 LTR ERV1 3 70 -379 2100 204 54 19 chr9 113810248 113810729 -28460715 - MLT1D LTR MaLR -5 500 3 314 349 86 30 chr9 113810776 113811171 -28460273 + HAL1 LINE L1 1080 1496 -1011 198 353 86 9 chr9 113812716 113812832 -28458612 + MIR3 SINE MIR 76 200 -8 273 169 46 15 chr9 113813332 113813397 -28458047 + L1ME LINE L1 52 118 -6001 891 324 37 55 chr9 113813423 113814044 -28457400 + L1ME LINE L1 205 814 -5305 373 260 46 66 chr9 113814520 113814773 -28456671 + L1ME LINE L1 3774 4023 -2106 1911 162 0 16 chr9 113814858 113815161 -28456283 + AluSx SINE Alu 4 301 -11 556 284 147 27 chr9 113815418 113816564 -28454880 + L1ME LINE L1 4470 5762 -395 15008 187 38 41 chr9 113816690 113818061 -28453383 + L1MA4A LINE L1 12 1386 -5619 2305 98 3 0 chr9 113818061 113818358 -28453086 + AluSp SINE Alu 3 300 -13 15008 187 38 41 chr9 113818358 113819375 -28452069 + L1MA4A LINE L1 1386 2405 -4600 213 65 0 0 chr9 113819375 113819406 -28452038 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 15008 187 38 41 chr9 113819406 113820736 -28450708 + L1MA4A LINE L1 2405 3738 -3267 2626 61 0 3 chr9 113820736 113821078 -28450366 + L1PA7 LINE L1 5814 6154 0 15008 187 38 41 chr9 113821078 113821767 -28449677 + L1MA4A LINE L1 3738 4428 -2577 1604 146 107 0 chr9 113821767 113822049 -28449395 + AluJo SINE Alu 5 314 0 15008 187 38 41 chr9 113822049 113823930 -28447514 + L1MA4A LINE L1 4428 6366 -639 393 128 12 23 chr9 113823947 113824033 -28447411 + GA-rich Low_complexity Low_complexity 2 86 0 1815 157 0 7 chr9 113824038 113824325 -28447119 + AluJb SINE Alu 28 312 0 3261 130 19 84 chr9 113824335 113825025 -28446419 + L1MA4A LINE L1 6357 7001 -4 2436 102 8 52 chr9 113825940 113826016 -28445428 - THE1B LTR MaLR 0 364 286 2347 100 10 0 chr9 113826016 113826325 -28445119 + AluSx SINE Alu 1 312 0 2436 102 8 52 chr9 113826325 113826629 -28444815 - THE1B LTR MaLR -78 286 1 998 33 0 0 chr9 113828224 113828346 -28443098 + L1PA4 LINE L1 6031 6152 -3 199 322 0 0 chr9 113828915 113828974 -28442470 - L2 LINE L2 -562 2752 2694 272 271 47 39 chr9 113829018 113829147 -28442297 + L1MC5 LINE L1 7604 7733 -228 2260 105 10 22 chr9 113829531 113829845 -28441599 - AluSx SINE Alu -2 310 1 6854 64 7 21 chr9 113830006 113830876 -28440568 + L1PA8 LINE L1 5194 6051 -121 2262 114 0 0 chr9 113830876 113831175 -28440269 + AluSg SINE Alu 1 299 -11 6854 64 7 21 chr9 113831175 113831284 -28440160 + L1PA8 LINE L1 6051 6160 -12 203 132 19 57 chr9 113831293 113831346 -28440098 + A-rich Low_complexity Low_complexity 3 53 0 419 237 29 19 chr9 113832891 113833042 -28438402 + MER63 DNA MER1_type 683 1060 0 186 43 0 0 chr9 113833101 113833124 -28438320 + (TC)n Simple_repeat Simple_repeat 1 23 0 290 311 36 96 chr9 113833164 113833444 -28438000 + L2 LINE L2 2967 3229 -43 519 295 22 49 chr9 113833498 113833722 -28437722 - MIR SINE MIR -30 232 15 327 106 0 76 chr9 113833779 113833845 -28437599 - MER106B DNA MER1_type -905 154 94 530 300 58 63 chr9 113833996 113834107 -28437337 - L1MC4a LINE L1 -1892 5916 5806 2212 129 0 0 chr9 113834107 113834416 -28437028 + AluSx SINE Alu 1 309 -3 530 300 58 63 chr9 113834416 113834714 -28436730 - L1MC4a LINE L1 -2002 5806 5509 2247 118 3 0 chr9 113835531 113835837 -28435607 + AluSx SINE Alu 1 307 -5 291 331 133 11 chr9 113835923 113836104 -28435340 - MIR SINE MIR -34 228 26 328 180 22 124 chr9 113837282 113837342 -28434102 - Tigger7 DNA MER2_type -7 2580 2530 2229 128 0 0 chr9 113837342 113837654 -28433790 + AluSx SINE Alu 1 312 0 328 180 22 124 chr9 113837654 113837682 -28433762 - Tigger7 DNA MER2_type -57 2530 2501 * 1274 200 75 4 chr9 113837679 113837919 -28433525 - Tigger7 DNA MER2_type -474 259 3 361 271 93 8 chr9 113837937 113838066 -28433378 - MIR3 SINE MIR -39 169 30 26 50 0 0 chr9 113838441 113838481 -28432963 + AT_rich Low_complexity Low_complexity 1 40 0 1974 121 43 0 chr9 113838566 113838847 -28432597 + AluSx SINE Alu 1 293 -19 381 254 60 76 chr9 113840071 113840247 -28431197 - MIR SINE MIR -64 144 2 1936 108 0 52 chr9 113840888 113841175 -28430269 + AluSg1 SINE Alu 1 272 -37 1004 48 8 0 chr9 113842323 113842448 -28428996 + L1PA8 LINE L1 6034 6159 -13 1074 86 0 0 chr9 113842457 113842608 -28428836 + (GGAA)n Simple_repeat Simple_repeat 2 152 0 226 258 0 16 chr9 113843383 113843445 -28427999 + HAL1 LINE L1 619 679 -1828 1531 177 15 72 chr9 113843520 113843905 -28427539 + L1MA8 LINE L1 5927 6281 -10 976 265 44 41 chr9 113843920 113844554 -28426890 + HAL1 LINE L1 1095 1835 -672 745 244 48 30 chr9 113844577 113844847 -28426597 + HAL1 LINE L1 1950 2224 -283 351 285 62 8 chr9 113845002 113845132 -28426312 + HAL1 LINE L1 2346 2482 -25 2840 125 6 15 chr9 113845132 113845604 -28425840 + L1MA5 LINE L1 5827 6294 -6 383 246 64 30 chr9 113845695 113845898 -28425546 - L1MC5 LINE L1 -212 7749 7540 780 288 57 22 chr9 113845927 113846156 -28425288 + MIR SINE MIR 2 238 -24 21 95 0 0 chr9 113846220 113846283 -28425161 + AT_rich Low_complexity Low_complexity 1 63 0 6673 71 10 2 chr9 113846427 113847316 -28424128 + L1PA7 LINE L1 5259 6154 0 4481 152 48 19 chr9 113847439 113847533 -28423911 + L1MB2 LINE L1 5276 5366 -805 357 24 0 0 chr9 113847533 113847575 -28423869 + (CA)n Simple_repeat Simple_repeat 2 43 0 4481 152 48 19 chr9 113847575 113848351 -28423093 + L1MB2 LINE L1 5366 6171 0 380 346 88 32 chr9 113848357 113848645 -28422799 + HAL1b LINE L1 271 586 -762 4147 97 75 12 chr9 113848645 113849298 -28422146 - L1MA3 LINE L1 0 6305 5612 380 346 88 32 chr9 113849298 113849385 -28422059 + HAL1b LINE L1 586 667 -681 181 257 139 83 chr9 113850585 113850729 -28420715 - L2 LINE L2 -1114 2200 2049 887 160 0 0 chr9 113851100 113851231 -28420213 + FLAM_C SINE Alu 1 131 -12 392 243 52 112 chr9 113851636 113851903 -28419541 + L1ME LINE L1 5507 5757 -364 251 193 79 0 chr9 113851955 113852069 -28419375 + (TA)n Simple_repeat Simple_repeat 2 124 0 1122 199 28 32 chr9 113852069 113852320 -28419124 + LTR8 LTR ERV1 442 691 0 596 209 187 7 chr9 113852320 113852342 -28419102 + MER8 DNA MER2_type 76 93 -146 192 77 0 0 chr9 113852342 113852368 -28419076 + (TA)n Simple_repeat Simple_repeat 1 26 0 596 209 187 7 chr9 113852368 113852484 -28418960 + MER8 DNA MER2_type 93 239 0 796 278 64 38 chr9 113852549 113853082 -28418362 + L1ME1 LINE L1 1337 1883 -4513 3289 200 58 9 chr9 113853100 113853894 -28417550 + L1MB7 LINE L1 5254 6086 -98 592 181 29 0 chr9 113853913 113854018 -28417426 - FLAM_A SINE Alu -27 115 8 346 154 143 0 chr9 113854018 113854109 -28417335 + L1MB7 LINE L1 6081 6184 0 3084 222 60 39 chr9 113854153 113855605 -28415839 + L1ME1 LINE L1 1949 3412 -2803 2685 224 75 30 chr9 113855665 113855872 -28415572 + L1ME1 LINE L1 4978 5174 -1186 2839 116 67 61 chr9 113855872 113856252 -28415192 + LTR64 LTR ERVK 1 387 -126 2098 74 67 0 chr9 113856252 113856570 -28414874 - AluSp SINE Alu 0 336 1 2839 116 67 61 chr9 113856570 113856696 -28414748 + LTR64 LTR ERVK 387 511 -2 2685 224 75 30 chr9 113856696 113857682 -28413762 + L1ME1 LINE L1 5174 6360 0 1629 57 0 5 chr9 113857806 113858017 -28413427 - L1PA6 LINE L1 -4 6150 5941 272 275 44 0 chr9 113858039 113858130 -28413314 - L1MC4 LINE L1 -428 7614 7520 866 244 61 8 chr9 113858337 113858583 -28412861 + L1MC4 LINE L1 6721 6979 -1063 1910 264 68 7 chr9 113858636 113859254 -28412190 + L1MC4 LINE L1 7238 7893 -149 210 241 19 0 chr9 113859313 113859367 -28412077 + GA-rich Low_complexity Low_complexity 1 55 0 720 186 0 21 chr9 113860952 113861097 -28410347 + FLAM_C SINE Alu 1 142 -1 282 339 15 15 chr9 113862496 113862626 -28408818 + MER5A DNA MER1_type 60 189 0 912 174 21 32 chr9 113862634 113862824 -28408620 - MER5A DNA MER1_type 0 189 2 21 0 0 0 chr9 113862880 113862901 -28408543 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 113863006 113863032 -28408412 + AT_rich Low_complexity Low_complexity 1 26 0 1144 165 64 124 chr9 113864168 113864410 -28407034 - MLT1A1 LTR MaLR 0 365 153 1519 164 29 29 chr9 113864410 113864685 -28406759 - AluJo SINE Alu -32 280 6 1144 165 64 124 chr9 113864685 113864830 -28406614 - MLT1A1 LTR MaLR -212 153 1 340 331 20 34 chr9 113865150 113865298 -28406146 + MER91A DNA MER1_type 1 146 -50 250 197 70 28 chr9 113865384 113865455 -28405989 - MER3 DNA MER1_type -135 74 1 371 322 45 5 chr9 113865761 113865960 -28405484 + L1ME LINE L1 4055 4261 -1885 295 255 75 19 chr9 113865953 113866114 -28405330 + L1ME LINE L1 4630 4799 -1347 * 787 186 0 0 chr9 113867534 113867674 -28403770 + FLAM_C SINE Alu 1 140 -3 644 285 153 33 chr9 113868938 113869513 -28401931 + L2 LINE L2 1614 2257 -1057 1710 185 34 3 chr9 113869556 113869853 -28401591 + AluJb SINE Alu 1 306 -6 1744 133 102 7 chr9 113869969 113870254 -28401190 + AluJb SINE Alu 1 312 0 260 325 86 17 chr9 113870647 113870764 -28400680 + L2 LINE L2 3147 3271 -1 2307 151 22 92 chr9 113871516 113871972 -28399472 + MSTA LTR MaLR 5 428 0 418 291 90 46 chr9 113872128 113872537 -28398907 + L1ME LINE L1 5309 5741 -380 2299 106 0 0 chr9 113872570 113872863 -28398581 + AluSx SINE Alu 2 294 -18 1173 260 63 103 chr9 113873216 113874066 -28397378 + L1MEd LINE L1 299 1114 -5005 23 68 0 0 chr9 113874323 113874367 -28397077 + AT_rich Low_complexity Low_complexity 1 44 0 441 66 0 0 chr9 113874676 113874737 -28396707 + (TA)n Simple_repeat Simple_repeat 2 62 0 504 315 142 39 chr9 113875933 113876419 -28395025 - L3 LINE CR1 -1 1576 1041 1762 184 0 3 chr9 113876645 113876951 -28394493 + AluJo SINE Alu 1 305 0 246 387 24 0 chr9 113876951 113877075 -28394369 + MER5A DNA MER1_type 63 189 0 354 171 0 0 chr9 113877110 113877180 -28394264 + (CA)n Simple_repeat Simple_repeat 2 71 0 183 115 0 58 chr9 113877477 113877529 -28393915 + (GGAAA)n Simple_repeat Simple_repeat 2 50 0 217 260 80 0 chr9 113878415 113878465 -28392979 - L3 LINE CR1 -13 1564 1511 388 243 151 26 chr9 113879216 113879368 -28392076 - MER5B DNA MER1_type -7 171 1 2412 156 21 5 chr9 113879532 113879916 -28391528 + MLT1B LTR MaLR 1 390 0 1195 162 30 81 chr9 113880129 113880426 -28391018 + L1MA7 LINE L1 5903 6184 -107 237 329 70 62 chr9 113880653 113880896 -28390548 + L2 LINE L2 2857 3101 -171 260 236 0 0 chr9 113880933 113880988 -28390456 - Charlie8 DNA MER1_type -5 2412 2358 187 266 0 141 chr9 113882097 113882161 -28389283 - L3 LINE CR1 -119 1458 1404 2371 94 3 0 chr9 113882417 113882725 -28388719 + AluSc SINE Alu 1 309 0 499 304 22 11 chr9 113882949 113883133 -28388311 + L1ME LINE L1 5523 5708 -413 250 184 138 23 chr9 113883284 113883371 -28388073 + HAL1b LINE L1 1236 1332 -16 242 220 98 53 chr9 113883484 113883616 -28387828 + L1ME LINE L1 5683 5820 -301 709 150 115 0 chr9 113883868 113883981 -28387463 + FLAM_C SINE Alu 2 127 -16 1490 214 52 46 chr9 113884239 113884271 -28387173 - MLT1B LTR MaLR 0 390 360 2006 62 0 31 chr9 113884271 113884530 -28386914 + AluY SINE Alu 39 289 -22 1490 214 52 46 chr9 113884530 113884885 -28386559 - MLT1B LTR MaLR -30 360 1 634 132 84 19 chr9 113885802 113886008 -28385436 + L1MA9 LINE L1 5981 6312 0 2364 90 0 10 chr9 113886356 113886667 -28384777 + AluSx SINE Alu 1 308 -4 208 293 114 32 chr9 113886954 113887077 -28384367 - MIR3 SINE MIR -54 154 22 23 33 0 0 chr9 113887332 113887362 -28384082 + AT_rich Low_complexity Low_complexity 1 30 0 2498 58 7 10 chr9 113887447 113887755 -28383689 + AluY SINE Alu 2 308 -3 313 319 115 33 chr9 113888071 113888341 -28383103 + L2 LINE L2 3022 3313 0 361 219 189 66 chr9 113888377 113888605 -28382839 - MER112 DNA MER1_type 0 256 1 396 231 13 0 chr9 113888917 113888995 -28382449 - MER116 DNA Mariner 0 80 2 307 277 0 30 chr9 113889036 113889137 -28382307 - L1MC4 LINE L1 -1331 6711 6614 336 231 0 0 chr9 113889144 113889248 -28382196 + (TA)n Simple_repeat Simple_repeat 1 104 0 14363 95 13 1 chr9 113889255 113891884 -28379560 - L1PA7 LINE L1 -18 6136 3473 1049 217 55 0 chr9 113891957 113892007 -28379437 + AluJo SINE Alu 75 121 -191 234 0 0 0 chr9 113892007 113892033 -28379411 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1049 217 55 0 chr9 113892033 113892199 -28379245 + AluJo SINE Alu 121 303 -9 387 278 57 57 chr9 113892267 113892443 -28379001 - L2 LINE L2 -188 3125 2950 240 35 0 0 chr9 113892563 113892592 -28378852 + (A)n Simple_repeat Simple_repeat 1 29 0 773 126 0 0 chr9 113892810 113892913 -28378531 - AluSx SINE Alu -14 298 196 1067 138 0 0 chr9 113892914 113893059 -28378385 - AluSx SINE Alu -167 146 2 203 320 40 20 chr9 113893899 113893999 -28377445 + L2 LINE L2 2242 2343 -971 2037 123 30 13 chr9 113894446 113894748 -28376696 + AluSx SINE Alu 1 307 -5 232 310 11 0 chr9 113895577 113895664 -28375780 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 880 157 0 15 chr9 113895953 113896125 -28375319 + FLAM_C SINE Alu 2 171 0 828 201 107 0 chr9 113896126 113896285 -28375159 + AluJb SINE Alu 121 296 -16 198 229 14 100 chr9 113896668 113896738 -28374706 + L2 LINE L2 3192 3255 -58 379 218 113 135 chr9 113896981 113897210 -28374234 + L2 LINE L2 3033 3256 -16 2317 101 0 16 chr9 113898214 113898530 -28372914 - AluSx SINE Alu -1 311 1 1862 143 10 14 chr9 113899907 113900201 -28371243 - AluJo SINE Alu -19 293 1 203 221 47 126 chr9 113901236 113901426 -28370018 - MIR3 SINE MIR -25 183 9 379 259 113 111 chr9 113902425 113903103 -28368341 + L1M4 LINE L1 709 1405 -5444 202 62 125 0 chr9 113905610 113905642 -28365802 + MIR SINE MIR 124 159 -103 842 159 14 14 chr9 113905978 113906123 -28365321 + FRAM SINE Alu 7 151 -25 23 0 0 0 chr9 113906124 113906147 -28365297 + AT_rich Low_complexity Low_complexity 1 23 0 1891 138 7 34 chr9 113906165 113906462 -28364982 + AluSx SINE Alu 1 289 -23 233 274 19 0 chr9 113907384 113907490 -28363954 + L1M4 LINE L1 3866 3973 -2875 25 65 0 0 chr9 113907589 113907635 -28363809 + AT_rich Low_complexity Low_complexity 1 46 0 2240 88 21 0 chr9 113907779 113908063 -28363381 - AluSp SINE Alu -23 290 1 24 106 0 0 chr9 113908188 113908282 -28363162 + AT_rich Low_complexity Low_complexity 1 94 0 244 311 83 18 chr9 113908315 113908592 -28362852 + L1M4 LINE L1 4252 4546 -2302 2139 104 28 0 chr9 113908594 113908882 -28362562 + AluSg SINE Alu 1 296 -14 237 269 21 0 chr9 113908882 113908964 -28362480 - L1MC4 LINE L1 -1341 6701 6615 231 300 0 0 chr9 113908885 113908975 -28362469 + L1MC4 LINE L1 6614 6703 -1339 * 292 158 21 74 chr9 113909069 113909164 -28362280 + L1MC4 LINE L1 6614 6703 -1339 672 321 63 20 chr9 113909214 113909563 -28361881 + L1M4 LINE L1 4659 5022 -1826 1220 226 98 73 chr9 113909713 113910234 -28361210 + LTR1B LTR ERV1 56 589 -237 2158 121 3 7 chr9 113910320 113910627 -28360817 - AluSx SINE Alu -6 306 1 276 306 16 8 chr9 113910767 113910888 -28360556 + L1M4 LINE L1 5279 5400 -1448 23 0 0 0 chr9 113910944 113910967 -28360477 + AT_rich Low_complexity Low_complexity 1 23 0 7131 62 4 29 chr9 113911072 113912541 -28358903 + L1PA13 LINE L1 4697 6162 -1 637 55 0 0 chr9 113912870 113912943 -28358501 + L1PA7 LINE L1 6069 6141 -13 26 93 0 0 chr9 113912943 113913018 -28358426 + AT_rich Low_complexity Low_complexity 1 75 0 425 278 75 17 chr9 113913529 113913702 -28357742 + MLT1J1 LTR MaLR 76 258 -188 1150 210 64 11 chr9 113914142 113914423 -28357021 + L1ME2 LINE L1 5793 6088 -76 1886 141 17 3 chr9 113914549 113914846 -28356598 + AluSx SINE Alu 1 301 -11 665 144 0 0 chr9 113915901 113915991 -28355453 + AluJ/FLAM SINE Alu 2 91 -221 32 0 0 0 chr9 113915997 113916029 -28355415 + AT_rich Low_complexity Low_complexity 1 32 0 2097 175 34 13 chr9 113916042 113916424 -28355020 - MLT1B LTR MaLR 0 390 1 2070 135 0 0 chr9 113917005 113917293 -28354151 - AluSx SINE Alu -11 301 14 1059 325 73 25 chr9 113917370 113918515 -28352929 + HERVL LTR ERVL 4061 5282 -203 227 330 70 0 chr9 113918701 113918801 -28352643 + LTR16A LTR ERVL 8 114 -336 317 304 103 16 chr9 113918946 113919140 -28352304 + LTR16A LTR ERVL 240 450 0 1561 206 13 20 chr9 113919495 113919796 -28351648 - AluJo SINE Alu -13 299 1 2053 192 3 3 chr9 113919888 113920247 -28351197 + MLT1A1 LTR MaLR 1 359 -6 193 305 0 0 chr9 113920818 113920877 -28350567 + L2 LINE L2 3214 3272 0 189 107 0 0 chr9 113921280 113921308 -28350136 + (A)n Simple_repeat Simple_repeat 1 28 0 594 134 0 118 chr9 113921775 113921902 -28349542 - FLAM_C SINE Alu -16 127 16 639 285 135 5 chr9 113922047 113922240 -28349204 - MIR SINE MIR -41 221 4 2532 54 0 0 chr9 113922449 113922744 -28348700 + AluY SINE Alu 1 295 -16 1151 151 0 3 chr9 113923508 113923731 -28347713 + AluJb SINE Alu 4 288 -24 314 309 113 0 chr9 113923799 113923993 -28347451 + MLT1K LTR MaLR 366 581 -7 673 263 110 76 chr9 113924432 113924904 -28346540 + MLT1J LTR MaLR 1 488 -23 294 120 40 27 chr9 113925049 113925124 -28346320 + GA-rich Low_complexity Low_complexity 3 78 0 186 206 41 14 chr9 113925176 113925249 -28346195 + GA-rich Low_complexity Low_complexity 3 77 0 251 133 80 0 chr9 113925301 113925376 -28346068 + GA-rich Low_complexity Low_complexity 3 83 0 530 355 62 8 chr9 113925845 113926087 -28345357 + MIR SINE MIR 8 262 0 711 217 49 36 chr9 113926637 113926765 -28344679 + L1MC5 LINE L1 7472 7597 -364 1843 192 0 0 chr9 113926765 113927067 -28344377 + AluJb SINE Alu 1 302 -10 711 217 49 36 chr9 113927067 113927242 -28344202 + L1MC5 LINE L1 7597 7779 -182 408 311 44 10 chr9 113927316 113927522 -28343922 + L1M4 LINE L1 2224 2436 -3710 21 71 0 0 chr9 113927683 113927725 -28343719 + AT_rich Low_complexity Low_complexity 1 42 0 1339 260 154 56 chr9 113927816 113928574 -28342870 - L2 LINE L2 -49 3264 2399 503 301 32 6 chr9 113930477 113930633 -28340811 + MER5A DNA MER1_type 30 189 0 1292 145 9 37 chr9 113930637 113930851 -28340593 + AluJb SINE Alu 84 291 -21 183 184 0 0 chr9 113930939 113930977 -28340467 + CT-rich Low_complexity Low_complexity 3 40 0 223 329 0 13 chr9 113931015 113931091 -28340353 + CT-rich Low_complexity Low_complexity 1 75 0 2295 105 0 0 chr9 113932830 113933134 -28338310 - AluSg SINE Alu -6 304 1 2365 87 0 3 chr9 113934813 113935113 -28336331 + AluY SINE Alu 1 299 -12 243 261 15 15 chr9 113935151 113935216 -28336228 + GA-rich Low_complexity Low_complexity 2 66 0 261 344 65 0 chr9 113935287 113935380 -28336064 - MIR SINE MIR -133 129 31 181 175 50 0 chr9 113935459 113935499 -28335945 + MIR3 SINE MIR 165 206 -2 287 242 12 31 chr9 113935869 113935879 -28335565 + (TTATA)n Simple_repeat Simple_repeat 4 13 -148 1817 134 76 0 chr9 113935879 113936154 -28335290 + AluSg SINE Alu 1 296 -14 287 242 12 31 chr9 113936154 113936304 -28335140 + (TTATA)n Simple_repeat Simple_repeat 13 161 0 25 51 0 0 chr9 113936333 113936372 -28335072 + AT_rich Low_complexity Low_complexity 1 39 0 5646 79 8 0 chr9 113936963 113937739 -28333705 - L1PA10 LINE L1 -10 6158 5377 1156 215 23 0 chr9 113937915 113938134 -28333310 + MER58A DNA MER1_type 1 224 0 560 301 17 11 chr9 113938142 113938318 -28333126 - MER5B DNA MER1_type 0 178 2 2338 167 39 5 chr9 113939008 113939422 -28332022 - MSTA LTR MaLR 0 428 1 2171 128 0 3 chr9 113939754 113940058 -28331386 + AluSx SINE Alu 1 303 -9 1837 110 40 40 chr9 113941002 113941301 -28330143 + AluSq SINE Alu 1 299 -14 611 161 9 27 chr9 113941417 113941529 -28329915 + FLAM_C SINE Alu 1 110 -33 201 74 0 0 chr9 113941533 113941560 -28329884 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1364 184 7 3 chr9 113942057 113942350 -28329094 + L1MA4 LINE L1 5980 6273 -27 258 32 0 0 chr9 113942359 113942390 -28329054 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 466 316 98 0 chr9 113942449 113942623 -28328821 + MIR SINE MIR 61 251 -11 2019 127 3 0 chr9 113942632 113942915 -28328529 + AluSq SINE Alu 30 313 0 504 239 220 38 chr9 113943539 113943748 -28327696 - MIR SINE MIR -13 249 3 2588 55 0 0 chr9 113943812 113944123 -28327321 - AluY SINE Alu 0 311 1 7526 31 5 0 chr9 113944156 113945662 -28325782 - L1PA3 LINE L1 -2 6153 4646 9142 27 0 0 chr9 113945662 113946786 -28324658 + L1PA3 LINE L1 3537 4660 -1486 308 351 93 0 chr9 113946922 113947073 -28324371 - MIR SINE MIR 0 262 98 389 272 54 0 chr9 113947570 113947662 -28323782 + MIR SINE MIR 50 146 -62 366 323 23 15 chr9 113947802 113947935 -28323509 + MIR SINE MIR 31 164 -98 642 246 6 6 chr9 113948293 113948464 -28322980 + L1MEc LINE L1 49 219 -6177 433 43 14 14 chr9 113948514 113948583 -28322861 + (TTTTA)n Simple_repeat Simple_repeat 2 70 0 855 151 0 0 chr9 113948584 113948703 -28322741 - AluSq/x SINE Alu -193 119 1 239 286 44 0 chr9 113948714 113948805 -28322639 + L1MEc LINE L1 289 383 -6013 330 255 13 34 chr9 113949092 113949241 -28322203 + L1MEc LINE L1 673 818 -5578 3093 173 31 11 chr9 113949247 113949884 -28321560 + L1MB5 LINE L1 5392 6041 -133 1854 227 83 1 chr9 113949879 113950548 -28320896 - L1M4 LINE L1 -1016 5130 4314 * 310 162 0 0 chr9 113950711 113950779 -28320665 + L1MEc LINE L1 878 945 -5451 524 234 16 0 chr9 113950797 113950925 -28320519 - MLT1F1 LTR MaLR -2 565 436 1754 246 56 94 chr9 113951110 113951261 -28320183 + L1ME LINE L1 31 186 -5894 2178 145 30 0 chr9 113951261 113951598 -28319846 - MER7A DNA MER2_type 0 346 2 1754 246 56 94 chr9 113951598 113951871 -28319573 + L1ME LINE L1 186 468 -5612 1008 118 59 6 chr9 113951871 113952040 -28319404 + L1PA16 LINE L1 5980 6157 -9 1754 246 56 94 chr9 113952040 113952430 -28319014 + L1ME LINE L1 468 871 -5209 246 105 0 0 chr9 113952430 113952468 -28318976 + (TA)n Simple_repeat Simple_repeat 2 39 0 1754 246 56 94 chr9 113952468 113953268 -28318176 + L1ME LINE L1 871 1549 -4531 283 296 26 26 chr9 113953372 113953487 -28317957 + L1ME LINE L1 1597 1711 -4550 2071 155 10 0 chr9 113953526 113953830 -28317614 - AluJb SINE Alu 0 312 6 1456 248 53 62 chr9 113953916 113954856 -28316588 + L1ME LINE L1 1746 2675 -3405 2274 54 36 4 chr9 113954856 113955136 -28316308 + AluY SINE Alu 1 289 -22 1456 248 53 62 chr9 113955136 113955288 -28316156 + L1ME LINE L1 2675 2827 -3253 774 165 0 0 chr9 113955290 113955405 -28316039 + AluJo SINE Alu 1 115 -187 2512 106 20 13 chr9 113955405 113955800 -28315644 + MLT2A1 LTR ERVL 2 399 -45 279 173 0 0 chr9 113955819 113955871 -28315573 + (TA)n Simple_repeat Simple_repeat 1 52 0 396 19 38 0 chr9 113955871 113955924 -28315520 + MLT2A1 LTR ERVL 399 453 0 6369 68 7 0 chr9 113955924 113956764 -28314680 + HERVL-A1 LTR ERVL 1 846 -4808 2826 79 0 0 chr9 113956783 113957138 -28314306 - THE1A LTR MaLR 0 355 1 839 202 20 50 chr9 113957138 113957336 -28314108 + AluJo SINE Alu 110 301 -11 1405 181 48 18 chr9 113957343 113957785 -28313659 + L1ME LINE L1 2827 3281 -2799 1660 179 18 11 chr9 113957792 113958077 -28313367 + AluJb SINE Alu 1 287 -25 270 136 0 0 chr9 113958087 113958131 -28313313 + (GGAGAA)n Simple_repeat Simple_repeat 3 46 0 261 217 239 0 chr9 113958131 113958269 -28313175 + L1ME LINE L1 3267 3437 -2643 212 161 36 54 chr9 113958312 113958368 -28313076 + (CATA)n Simple_repeat Simple_repeat 2 56 0 744 218 0 0 chr9 113958824 113958957 -28312487 - FLAM_C SINE Alu -10 133 1 809 196 42 12 chr9 113960763 113960931 -28310513 - MER5B DNA MER1_type 0 178 6 473 190 314 0 chr9 113960951 113961088 -28310356 + MER5A DNA MER1_type 9 188 -1 558 189 0 228 chr9 113961131 113961359 -28310085 - MER5B DNA MER1_type -2 176 1 341 289 33 25 chr9 113961506 113961627 -28309817 - MER5A DNA MER1_type -67 122 1 598 71 71 0 chr9 113962007 113962091 -28309353 - HY4 scRNA scRNA -3 90 1 263 312 57 19 chr9 113962343 113962491 -28308953 + MIR SINE MIR 100 256 -6 1820 146 16 9 chr9 113962491 113962812 -28308632 - L1MC1 LINE L1 0 6333 6011 225 0 0 0 chr9 113964401 113964426 -28307018 + (T)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr9 113965787 113965821 -28305623 + (TG)n Simple_repeat Simple_repeat 2 35 0 2028 132 7 0 chr9 113966021 113966324 -28305120 - AluSx SINE Alu -7 305 1 277 368 81 40 chr9 113966467 113966763 -28304681 - L2 LINE L2 0 3272 2965 265 282 64 18 chr9 113967084 113967194 -28304250 - L2 LINE L2 -791 2523 2409 604 180 10 0 chr9 113967197 113967297 -28304147 + FLAM_C SINE Alu 3 103 -40 1960 170 34 28 chr9 113968107 113968495 -28302949 + MLT1B LTR MaLR 1 390 0 1283 164 9 23 chr9 113968500 113968512 -28302932 - AluJo SINE Alu -15 297 286 2199 125 3 0 chr9 113968512 113968816 -28302628 - AluSx SINE Alu 0 312 8 210 37 0 0 chr9 113968817 113968844 -28302600 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1283 164 9 23 chr9 113968844 113969043 -28302401 - AluJo SINE Alu -25 287 87 1918 149 4 0 chr9 113969058 113969339 -28302105 - AluSx SINE Alu -30 282 1 745 156 23 16 chr9 113969427 113969555 -28301889 - FLAM_C SINE Alu -14 129 1 198 0 0 0 chr9 113969555 113969577 -28301867 + (A)n Simple_repeat Simple_repeat 1 22 0 450 241 256 34 chr9 113970116 113970323 -28301121 + MIR SINE MIR 2 254 -8 1330 216 26 0 chr9 113970328 113970500 -28300944 - AluJb SINE Alu 0 301 118 195 100 0 0 chr9 113970500 113970530 -28300914 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1330 216 26 0 chr9 113970530 113970646 -28300798 - AluJb SINE Alu -183 118 6 1363 215 52 64 chr9 113971328 113971794 -28299650 - MLT1C LTR MaLR 0 467 8 1918 158 10 0 chr9 113971814 113972112 -28299332 - AluJb SINE Alu -11 301 1 374 256 75 35 chr9 113972646 113972845 -28298599 - HAL1 LINE L1 -89 2418 2212 264 306 0 0 chr9 113972856 113972928 -28298516 + (CA)n Simple_repeat Simple_repeat 1 72 0 249 243 0 0 chr9 113972929 113972999 -28298445 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 291 263 0 0 chr9 113973000 113973080 -28298364 - HAL1 LINE L1 -287 2220 2141 1651 265 73 14 chr9 113973100 113973731 -28297713 - HAL1 LINE L1 -442 2065 1398 273 262 79 24 chr9 113973731 113973857 -28297587 - LTR33 LTR ERVL 0 521 389 440 259 0 22 chr9 113974473 113974608 -28296836 + HAL1 LINE L1 128 259 -2248 4980 178 90 31 chr9 113975341 113976563 -28294881 + Charlie1a DNA MER1_type 18 1311 -144 1705 138 7 60 chr9 113977515 113977813 -28293631 + AluJb SINE Alu 1 282 -30 207 69 0 0 chr9 113977816 113977845 -28293599 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 320 315 39 67 chr9 113979349 113979405 -28292039 + MIR SINE MIR 19 75 -187 2248 72 0 39 chr9 113979405 113979712 -28291732 - AluY SINE Alu -16 295 1 320 315 39 67 chr9 113979712 113979850 -28291594 + MIR SINE MIR 75 209 -53 291 296 130 19 chr9 113980299 113980407 -28291037 - MIR SINE MIR -138 124 5 2140 133 10 0 chr9 113980599 113980901 -28290543 - AluY SINE Alu -6 305 1 1012 231 72 65 chr9 113981028 113981232 -28290212 - MER2 DNA MER2_type 0 345 137 1910 147 0 13 chr9 113981232 113981538 -28289906 + AluSx SINE Alu 1 302 -10 1012 231 72 65 chr9 113981538 113981654 -28289790 - MER2 DNA MER2_type -208 137 23 196 294 150 0 chr9 113981714 113981829 -28289615 - MIR SINE MIR -52 156 26 1869 215 26 10 chr9 113982116 113982506 -28288938 - MSTD LTR MaLR 0 396 1 780 157 0 75 chr9 113983660 113983680 -28287764 - FRAM SINE Alu -157 155 135 2643 102 3 3 chr9 113983680 113984042 -28287402 - THE1B LTR MaLR 0 364 3 10009 101 54 35 chr9 113984044 113985593 -28285851 - THE1B-int LTR MaLR 0 1580 3 2365 130 5 16 chr9 113985594 113985962 -28285482 - THE1B LTR MaLR 0 364 1 780 157 0 75 chr9 113985962 113986083 -28285361 - FRAM SINE Alu -177 135 20 260 133 22 0 chr9 113986086 113986131 -28285313 - AluJ/FLAM SINE Alu -223 79 34 195 42 0 0 chr9 113986587 113986611 -28284833 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 361 280 103 37 chr9 113986735 113986949 -28284495 + L1M4 LINE L1 2272 2499 -3647 379 318 95 0 chr9 113987318 113987444 -28284000 - HERVL LTR ERVL -1093 4561 4424 1069 293 75 9 chr9 113987498 113987833 -28283611 - HERVL LTR ERVL -1440 4324 3968 695 306 43 48 chr9 113987880 113988117 -28283327 - HERVL LTR ERVL -2823 2831 2595 1604 148 22 19 chr9 113988117 113988388 -28283056 + AluSx SINE Alu 39 310 -2 695 306 43 48 chr9 113988388 113988546 -28282898 - HERVL LTR ERVL -3059 2595 2438 449 311 118 38 chr9 113988711 113989158 -28282286 - LTR33 LTR ERVL -1 520 17 2269 102 13 0 chr9 113989281 113989584 -28281860 - AluSx SINE Alu -5 307 1 243 0 0 0 chr9 113989593 113989620 -28281824 + (T)n Simple_repeat Simple_repeat 1 27 0 7193 34 16 0 chr9 113989638 113990673 -28280771 - L1PA5 LINE L1 -4 6150 5094 1750 144 77 3 chr9 113991538 113991823 -28279621 + AluSx SINE Alu 1 306 -6 605 261 49 11 chr9 113992693 113992877 -28278567 - MIR SINE MIR 0 262 72 290 103 0 0 chr9 113993360 113993399 -28278045 - MER4D LTR ERV1 -74 829 791 510 305 143 48 chr9 113993473 113993838 -28277606 + MLT1L LTR MaLR 142 471 -144 3346 61 32 5 chr9 113993838 113994279 -28277165 - L1PA7 LINE L1 -5 6149 5697 1803 169 7 10 chr9 113994283 113994585 -28276859 - AluJb SINE Alu -11 301 1 510 305 143 48 chr9 113994585 113994647 -28276797 + MLT1L LTR MaLR 473 615 0 338 320 55 39 chr9 113994863 113994991 -28276453 - L2 LINE L2 0 3272 3143 38 22 0 0 chr9 113995138 113995183 -28276261 + AT_rich Low_complexity Low_complexity 1 45 0 200 365 110 48 chr9 113995661 113996390 -28275054 - L2 LINE L2 -2119 1195 422 846 234 0 0 chr9 113996397 113996572 -28274872 + AluJb SINE Alu 137 311 -1 1863 139 33 0 chr9 113996835 113997136 -28274308 - AluSx SINE Alu 0 310 1 385 214 95 0 chr9 113997278 113997362 -28274082 - MIR SINE MIR -69 193 102 441 387 12 8 chr9 113997638 113997891 -28273553 + L1MEc LINE L1 85 338 -6058 1199 279 50 47 chr9 113998241 113998417 -28273027 + L1MEc LINE L1 1301 1475 -4921 1992 120 21 3 chr9 113998417 113998708 -28272736 + AluSx SINE Alu 1 296 -16 1199 279 50 47 chr9 113998708 113999060 -28272384 + L1MEc LINE L1 1475 1834 -4562 2199 49 83 10 chr9 113999060 113999348 -28272096 - AluY SINE Alu -2 309 1 1199 279 50 47 chr9 113999348 113999460 -28271984 + L1MEc LINE L1 1834 1944 -4452 233 143 0 71 chr9 113999469 113999539 -28271905 + L1MB7 LINE L1 4359 4423 -1723 2171 76 0 0 chr9 113999539 113999815 -28271629 - AluY SINE Alu -6 305 30 1961 118 16 23 chr9 113999944 114000250 -28271194 + AluSq SINE Alu 1 304 -9 385 154 39 87 chr9 114000266 114000370 -28271074 + L1MB7 LINE L1 4454 4552 -1594 312 85 43 0 chr9 114000371 114000418 -28271026 + AluJo SINE Alu 88 136 -166 4027 172 45 54 chr9 114000427 114000591 -28270853 + L1MB7 LINE L1 4541 4705 -1479 907 200 0 24 chr9 114000591 114000761 -28270683 + AluJo SINE Alu 137 302 0 4027 172 45 54 chr9 114000761 114001456 -28269988 + L1MB7 LINE L1 4705 5405 -779 1471 163 0 45 chr9 114001456 114001720 -28269724 + AluSx SINE Alu 3 254 -58 4027 172 45 54 chr9 114001720 114002500 -28268944 + L1MB7 LINE L1 5405 6165 -19 415 259 38 15 chr9 114002549 114002680 -28268764 + L1M4 LINE L1 4526 4659 -1487 24 32 0 0 chr9 114002816 114002847 -28268597 + AT_rich Low_complexity Low_complexity 1 31 0 1816 167 8 37 chr9 114002855 114003034 -28268410 - MER2 DNA MER2_type 0 345 179 1086 23 8 0 chr9 114003034 114003166 -28268278 - L1PA4 LINE L1 -3 6152 6020 1816 167 8 37 chr9 114003166 114003339 -28268105 - MER2 DNA MER2_type -166 179 3 961 313 107 22 chr9 114003435 114003969 -28267475 - L3 LINE CR1 -355 1222 644 272 344 70 31 chr9 114004062 114004190 -28267254 - MER5A DNA MER1_type 0 189 57 331 245 105 92 chr9 114004855 114005169 -28266275 + L1ME4a LINE L1 5725 6042 -79 1735 174 11 0 chr9 114005470 114005751 -28265693 + AluJo SINE Alu 1 284 -28 28 29 0 0 chr9 114005757 114005792 -28265652 + AT_rich Low_complexity Low_complexity 1 35 0 615 237 8 0 chr9 114005871 114005989 -28265455 - FLAM_C SINE Alu -24 119 1 2816 184 52 9 chr9 114006070 114006609 -28264835 - MER68 LTR ERV1 0 562 1 1880 160 0 31 chr9 114006746 114007064 -28264380 - AluJb SINE Alu -4 308 1 340 206 142 32 chr9 114007152 114007307 -28264137 - L1ME4a LINE L1 -12 6109 5938 229 231 51 0 chr9 114007307 114007385 -28264059 + (TA)n Simple_repeat Simple_repeat 2 83 0 258 344 69 32 chr9 114007574 114007763 -28263681 + L2 LINE L2 2736 2931 -383 283 256 88 16 chr9 114007863 114007988 -28263456 + L2 LINE L2 3180 3313 0 23 0 0 0 chr9 114009475 114009498 -28261946 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr9 114009731 114009766 -28261678 + AT_rich Low_complexity Low_complexity 1 35 0 229 268 24 12 chr9 114010054 114010136 -28261308 + L1ME2 LINE L1 5691 5773 -348 442 206 27 137 chr9 114011564 114011669 -28259775 + L1ME2 LINE L1 5960 6032 -132 2111 131 0 0 chr9 114011669 114011995 -28259449 - AluY SINE Alu 0 326 1 442 206 27 137 chr9 114011995 114012106 -28259338 + L1ME2 LINE L1 6032 6154 -10 259 260 81 32 chr9 114012633 114012756 -28258688 - LTR67 LTR ERVL -1 556 428 320 340 21 43 chr9 114014109 114014250 -28257194 + MIR SINE MIR 53 190 -72 21 36 0 0 chr9 114014318 114014346 -28257098 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr9 114014386 114014425 -28257019 + AT_rich Low_complexity Low_complexity 1 39 0 30 27 0 0 chr9 114014443 114014480 -28256964 + AT_rich Low_complexity Low_complexity 1 37 0 230 302 16 16 chr9 114014856 114014919 -28256525 + MIR SINE MIR 12 74 -188 2003 173 0 0 chr9 114015050 114015351 -28256093 + AluJb SINE Alu 1 301 -11 28 48 0 0 chr9 114015354 114015396 -28256048 + AT_rich Low_complexity Low_complexity 1 42 0 318 160 33 31 chr9 114015437 114015864 -28255580 + (TA)n Simple_repeat Simple_repeat 1 428 0 1907 139 11 14 chr9 114016188 114016469 -28254975 - AluJb SINE Alu -30 282 3 46 33 0 0 chr9 114016490 114016550 -28254894 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr9 114016633 114016654 -28254790 + AT_rich Low_complexity Low_complexity 1 21 0 542 97 0 52 chr9 114017054 114017188 -28254256 + (GGA)n Simple_repeat Simple_repeat 2 128 0 373 141 55 31 chr9 114017290 114017418 -28254026 + GA-rich Low_complexity Low_complexity 5 135 0 534 311 27 36 chr9 114018786 114019005 -28252439 + LTR16A LTR ERVL 1 217 -233 2122 141 0 0 chr9 114019190 114019494 -28251950 + AluSx SINE Alu 1 304 -8 252 279 48 0 chr9 114019638 114019742 -28251702 + L1 LINE L1 4561 4669 -1477 263 337 11 11 chr9 114019979 114020074 -28251370 - MLT1G1 LTR MaLR -50 545 451 896 185 6 0 chr9 114020111 114020268 -28251176 - FRAM SINE Alu -18 158 1 767 325 55 18 chr9 114020270 114020950 -28250494 + L1ME LINE L1 3626 4346 -1800 2217 57 0 4 chr9 114021060 114021325 -28250119 - AluY SINE Alu -15 296 33 328 302 114 39 chr9 114021515 114021548 -28249896 + L1ME LINE L1 5255 5284 -837 1201 167 43 26 chr9 114021548 114021781 -28249663 + MER8 DNA MER2_type 3 239 0 328 302 114 39 chr9 114021781 114022129 -28249315 + L1ME LINE L1 5284 5662 -459 225 132 0 0 chr9 114022129 114022167 -28249277 + (TG)n Simple_repeat Simple_repeat 2 39 0 1879 275 67 25 chr9 114023665 114023811 -28247633 + L2 LINE L2 1204 1342 -1972 1780 176 7 7 chr9 114023811 114024118 -28247326 + AluJo SINE Alu 1 307 -5 1879 275 67 25 chr9 114024118 114024641 -28246803 + L2 LINE L2 1342 1901 -1413 308 248 262 0 chr9 114024679 114024820 -28246624 + L2 LINE L2 3129 3306 -7 532 283 125 0 chr9 114027081 114027266 -28244178 + MIR SINE MIR 37 244 -18 2313 262 98 56 chr9 114030161 114031470 -28239974 + L1M2a LINE L1 1 1254 -5914 1077 58 13 7 chr9 114031470 114031625 -28239819 + (GAAA)n Simple_repeat Simple_repeat 1 156 0 2313 262 98 56 chr9 114031625 114032104 -28239340 + L1M2a LINE L1 1254 1712 -5456 5582 54 0 4 chr9 114032104 114032805 -28238639 + L1PA7 LINE L1 5457 6154 0 2313 262 98 56 chr9 114032805 114033186 -28238258 + L1M2a LINE L1 1712 2076 -5092 1837 142 4 0 chr9 114033186 114033446 -28237998 + AluSx SINE Alu 35 295 -17 2313 262 98 56 chr9 114033446 114033525 -28237919 + L1M2a LINE L1 2076 3016 -4152 690 207 82 47 chr9 114033716 114033972 -28237472 + L1MA9 LINE L1 6010 6274 -38 365 270 154 14 chr9 114034051 114034307 -28237137 - L1M LINE L1 -754 5416 5123 299 255 138 31 chr9 114034723 114034919 -28236525 + L1ME3 LINE L1 17 233 -6190 310 223 15 92 chr9 114035237 114035367 -28236077 + L1ME3 LINE L1 1175 1294 -5129 21 0 0 0 chr9 114035367 114035388 -28236056 + AT_rich Low_complexity Low_complexity 1 21 0 417 146 232 0 chr9 114035399 114035481 -28235963 - U6 snRNA snRNA -6 101 1 613 104 38 9 chr9 114035798 114035904 -28235540 + L1MA8 LINE L1 6178 6286 -5 289 237 61 23 chr9 114035914 114036045 -28235399 + L1ME3 LINE L1 1738 1873 -5058 2861 252 75 63 chr9 114036130 114038724 -28232720 + L1ME3 LINE L1 4340 6957 0 242 276 90 8 chr9 114038811 114038945 -28232499 - L1M4 LINE L1 -1537 4609 4465 1809 132 25 18 chr9 114039356 114039636 -28231808 + AluSx SINE Alu 15 296 -16 588 286 113 33 chr9 114040589 114040890 -28230554 - MLT1J LTR MaLR -182 329 5 961 204 0 0 chr9 114040935 114041107 -28230337 - AluJo/FRAM SINE Alu -5 307 136 1902 146 42 0 chr9 114041109 114041397 -28230047 - AluSx SINE Alu -12 300 1 22 35 0 0 chr9 114041397 114041426 -28230018 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr9 114041447 114041485 -28229959 + AT_rich Low_complexity Low_complexity 1 38 0 2252 109 3 0 chr9 114041505 114041807 -28229637 - AluSq SINE Alu -10 303 1 29 28 0 0 chr9 114042193 114042229 -28229215 + AT_rich Low_complexity Low_complexity 1 36 0 32 98 0 0 chr9 114042412 114042514 -28228930 + AT_rich Low_complexity Low_complexity 1 102 0 339 65 0 0 chr9 114043035 114043081 -28228363 + (TG)n Simple_repeat Simple_repeat 2 47 0 413 136 28 182 chr9 114043348 114043524 -28227920 + MER104 DNA Tc2 31 179 -1 180 361 21 41 chr9 114044492 114044589 -28226855 - MIR3 SINE MIR -109 99 5 269 200 0 0 chr9 114046559 114046614 -28224830 + LTR67 LTR ERVL 486 540 -17 1774 94 51 14 chr9 114046724 114047000 -28224444 + L1MA1 LINE L1 6017 6302 0 5431 147 21 19 chr9 114047013 114048786 -28222658 - L1PB1 LINE L1 0 6151 4377 498 152 0 22 chr9 114048906 114048998 -28222446 - MER7A DNA MER2_type 0 346 257 943 249 68 61 chr9 114049000 114049327 -28222117 + LTR56 LTR ERV1 1 333 -112 1521 121 0 14 chr9 114049327 114049550 -28221894 + AluSg/x SINE Alu 90 309 -3 943 249 68 61 chr9 114049550 114049663 -28221781 + LTR56 LTR ERV1 333 444 -1 1654 140 12 0 chr9 114049685 114049942 -28221502 - MER7A DNA MER2_type -88 258 1 4180 163 24 1 chr9 114050605 114051286 -28220158 - MER44D DNA MER2_type -1 604 37 2071 286 93 41 chr9 114051364 114052746 -28218698 - L1MC4 LINE L1 -18 8024 6410 2042 139 0 13 chr9 114052746 114053048 -28218396 - AluSx SINE Alu -14 298 1 2071 286 93 41 chr9 114053048 114053425 -28218019 - L1MC4 LINE L1 -1632 6410 6054 2518 60 0 13 chr9 114053433 114053748 -28217696 - AluY SINE Alu 0 311 1 1044 267 131 10 chr9 114053816 114054130 -28217314 - L1MC4 LINE L1 -2017 5791 5416 1528 171 84 12 chr9 114054130 114054451 -28216993 + MER2 DNA MER2_type 1 344 0 1044 267 131 10 chr9 114054451 114054540 -28216904 - L1MC4 LINE L1 -2392 5416 5339 32 20 0 20 chr9 114054611 114054640 -28216804 + AT_rich Low_complexity Low_complexity 1 30 -19 2423 45 7 3 chr9 114054640 114054927 -28216517 - AluY SINE Alu -23 288 1 32 20 0 20 chr9 114054927 114054947 -28216497 + AT_rich Low_complexity Low_complexity 30 49 0 478 290 67 30 chr9 114055001 114055298 -28216146 - L1MC4a LINE L1 -1814 5994 5687 1000 199 46 37 chr9 114055609 114055813 -28215631 + MER20 DNA MER1_type 2 210 -9 3602 109 21 0 chr9 114055813 114056337 -28215107 - L1PA15 LINE L1 -4 6161 5627 1000 199 46 37 chr9 114056337 114056348 -28215096 + MER20 DNA MER1_type 210 219 0 21 0 0 0 chr9 114056464 114056485 -28214959 + AT_rich Low_complexity Low_complexity 1 21 0 2560 65 0 3 chr9 114056703 114057013 -28214431 - AluY SINE Alu -2 309 1 1863 155 3 10 chr9 114057876 114058179 -28213265 + AluJb SINE Alu 1 301 -11 1066 180 83 87 chr9 114058501 114058801 -28212643 + AluJo SINE Alu 2 300 -2 377 283 99 64 chr9 114059207 114059426 -28212018 + L1MC4a LINE L1 5412 5622 -2186 1334 46 6 12 chr9 114059426 114059599 -28211845 + L1PA6 LINE L1 5976 6147 -7 377 283 99 64 chr9 114059599 114059729 -28211715 + L1MC4a LINE L1 5622 5746 -2062 1792 181 33 9 chr9 114059729 114060065 -28211379 + MER2 DNA MER2_type 1 344 0 377 283 99 64 chr9 114060065 114060180 -28211264 + L1MC4a LINE L1 5746 5893 -1915 739 167 0 22 chr9 114060473 114060611 -28210833 + FLAM_C SINE Alu 1 135 -8 2236 97 0 3 chr9 114060705 114061003 -28210441 + AluSq SINE Alu 1 297 -16 203 0 37 0 chr9 114061007 114061034 -28210410 + (TG)n Simple_repeat Simple_repeat 1 28 0 184 253 114 25 chr9 114061691 114061770 -28209674 + MER5B DNA MER1_type 87 172 -6 1086 192 0 22 chr9 114062029 114062253 -28209191 - L1MA4A LINE L1 -12 6291 6073 290 222 30 101 chr9 114062807 114062906 -28208538 - L2 LINE L2 -8 3264 3173 239 278 0 0 chr9 114063331 114063385 -28208059 + L2 LINE L2 3201 3254 -18 684 192 33 0 chr9 114063385 114063505 -28207939 + Tigger3(Golem) DNA MER2_type 1 124 -2905 * 3353 152 100 13 chr9 114063480 114064172 -28207272 + Tigger3(Golem) DNA MER2_type 2278 3029 0 1718 178 0 4 chr9 114064829 114065110 -28206334 - AluJb SINE Alu -32 280 1 27 0 0 0 chr9 114065660 114065687 -28205757 + AT_rich Low_complexity Low_complexity 1 27 0 498 143 82 10 chr9 114065780 114065878 -28205566 - FRAM SINE Alu -61 115 11 2018 141 3 35 chr9 114066373 114066720 -28204724 - MER1B DNA MER1_type -1 336 1 425 254 132 56 chr9 114066950 114067015 -28204429 - MIR SINE MIR -33 229 170 378 0 0 0 chr9 114067015 114067057 -28204387 + (CAT)n Simple_repeat Simple_repeat 2 43 0 425 254 132 56 chr9 114067057 114067091 -28204353 - MIR SINE MIR -92 170 140 705 183 11 78 chr9 114067091 114067218 -28204226 + MER5B DNA MER1_type 1 112 -66 2332 89 3 0 chr9 114067218 114067520 -28203924 - AluSp SINE Alu -10 303 1 705 183 11 78 chr9 114067520 114067583 -28203861 + MER5B DNA MER1_type 112 178 0 425 254 132 56 chr9 114067583 114067695 -28203749 - MIR SINE MIR -122 140 1 432 186 0 0 chr9 114067956 114068042 -28203402 - L1ME3A LINE L1 -223 5947 5862 214 204 0 20 chr9 114068142 114068191 -28203253 + MER5B DNA MER1_type 131 178 0 220 319 55 11 chr9 114068213 114068304 -28203140 - MIR SINE MIR -167 95 1 766 261 37 0 chr9 114068565 114068783 -28202661 - L1ME3A LINE L1 -223 5947 5722 1617 124 39 0 chr9 114068853 114069135 -28202309 - L1MA8 LINE L1 -6 6285 5993 392 48 16 63 chr9 114069200 114069263 -28202181 - MADE1 DNA Mariner 0 80 21 1158 281 122 21 chr9 114069270 114069525 -28201919 - L1ME3A LINE L1 -629 5541 5313 1865 167 0 0 chr9 114069525 114069812 -28201632 - AluJo SINE Alu -16 296 10 1158 281 122 21 chr9 114069812 114070563 -28200881 - L1ME3A LINE L1 -857 5313 4430 1511 287 146 23 chr9 114070673 114072638 -28198806 + L1ME3A LINE L1 3673 5873 -297 2448 76 0 0 chr9 114072968 114073271 -28198173 - AluY SINE Alu -8 303 1 4383 24 0 0 chr9 114073386 114073893 -28197551 - L1PA5 LINE L1 -4 6150 5644 627 288 83 50 chr9 114073949 114074404 -28197040 - MLT1H LTR MaLR 0 549 80 307 247 52 0 chr9 114074534 114074611 -28196833 - L2 LINE L2 -5 3308 3228 6335 38 0 0 chr9 114075131 114075922 -28195522 - L1PA4 LINE L1 -1 6154 5364 4288 34 9 0 chr9 114075920 114076477 -28194967 + L1PA4 LINE L1 4807 5368 -778 * 801 320 126 22 chr9 114077225 114077750 -28193694 - L2 LINE L2 -1 3312 2721 1041 150 27 94 chr9 114077859 114078258 -28193186 - L1MDa LINE L1 -3826 2714 2347 1210 183 102 102 chr9 114078268 114078560 -28192884 - L1MC4 LINE L1 0 8042 7748 2134 126 7 0 chr9 114078560 114078862 -28192582 + AluSx SINE Alu 1 304 -8 1210 183 102 102 chr9 114078862 114079098 -28192346 - L1MC4 LINE L1 -293 7749 7514 267 103 0 0 chr9 114079101 114079140 -28192304 + (TTCC)n Simple_repeat Simple_repeat 4 42 0 517 235 0 0 chr9 114079155 114079253 -28192191 - FLAM_A SINE Alu -44 98 1 624 242 57 27 chr9 114079296 114079594 -28191850 + L1ME4a LINE L1 5712 6018 -103 762 113 0 0 chr9 114080190 114080305 -28191139 + (TA)n Simple_repeat Simple_repeat 2 116 0 436 285 7 14 chr9 114080306 114080450 -28190994 - MIR SINE MIR -3 259 117 194 195 98 0 chr9 114080637 114080678 -28190766 - MIR SINE MIR -150 112 68 2249 67 0 25 chr9 114080896 114081181 -28190263 + AluY SINE Alu 1 278 -33 342 0 0 0 chr9 114081181 114081219 -28190225 + (CA)n Simple_repeat Simple_repeat 1 38 0 366 296 24 53 chr9 114081747 114081815 -28189629 + MIR SINE MIR 43 111 -151 1481 216 3 7 chr9 114081815 114082116 -28189328 - AluJo SINE Alu -12 300 1 366 296 24 53 chr9 114082116 114082216 -28189228 + MIR SINE MIR 111 206 -56 10662 176 30 21 chr9 114083213 114083889 -28187555 + L1PB2 LINE L1 2745 3413 -2738 1941 149 3 23 chr9 114083889 114084014 -28187430 + AluJb SINE Alu 1 127 -185 315 0 0 0 chr9 114084014 114084049 -28187395 + (TG)n Simple_repeat Simple_repeat 2 36 0 1941 149 3 23 chr9 114084049 114084231 -28187213 + AluJb SINE Alu 127 302 -10 10662 176 30 21 chr9 114084231 114086937 -28184507 + L1PB2 LINE L1 3413 6149 -2 22 0 0 0 chr9 114087104 114087126 -28184318 + AT_rich Low_complexity Low_complexity 1 22 0 409 224 60 0 chr9 114088172 114088288 -28183156 + L1ME2 LINE L1 5599 5721 -443 678 181 24 54 chr9 114088301 114088467 -28182977 + L1ME2 LINE L1 6003 6163 -1 679 222 71 10 chr9 114088825 114089023 -28182421 + MLT1D LTR MaLR 1 210 -295 633 162 19 0 chr9 114089557 114089662 -28181782 - L1PA8A LINE L1 -1 6130 6024 689 138 35 41 chr9 114089662 114089807 -28181637 - L1PA11 LINE L1 -112 6062 5919 321 313 11 6 chr9 114090182 114090361 -28181083 + L1MC4 LINE L1 7719 7898 -144 420 77 66 0 chr9 114090362 114090453 -28180991 + (TG)n Simple_repeat Simple_repeat 2 98 0 180 111 0 0 chr9 114091273 114091300 -28180144 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 207 224 20 0 chr9 114091303 114091352 -28180092 - L2 LINE L2 0 3313 3264 736 153 29 7 chr9 114091475 114091612 -28179832 + L1PA15 LINE L1 6026 6165 0 246 261 92 92 chr9 114091801 114091943 -28179501 + MER5B DNA MER1_type 9 150 -28 398 152 0 2 chr9 114093189 114093263 -28178181 + MLT1F LTR MaLR 26 98 -457 13333 156 35 14 chr9 114093263 114094433 -28177011 - L1PA11 LINE L1 -1 7611 6466 2268 120 0 0 chr9 114094433 114094732 -28176712 - AluSx SINE Alu -13 299 1 13333 156 35 14 chr9 114094732 114096933 -28174511 - L1PA11 LINE L1 -1146 6466 4178 8194 223 30 27 chr9 114096937 114096958 -28174486 - L1PA11 LINE L1 -3373 4211 4192 16908 27 0 0 chr9 114096958 114099724 -28171720 - L1PA3 LINE L1 0 6155 3392 8194 223 30 27 chr9 114099724 114100762 -28170682 - L1PA11 LINE L1 -3392 4192 3158 2145 87 0 0 chr9 114100762 114101028 -28170416 + AluY SINE Alu 37 302 -9 8194 223 30 27 chr9 114101028 114103081 -28168363 - L1PA11 LINE L1 -4426 3158 20 828 252 64 26 chr9 114103093 114103537 -28167907 + MLT1F LTR MaLR 98 590 0 640 266 161 67 chr9 114104360 114104611 -28166833 - L2 LINE L2 0 3313 3087 2429 168 41 53 chr9 114104611 114104726 -28166718 + MLT1D LTR MaLR 1 116 -389 2123 131 6 10 chr9 114104726 114105038 -28166406 - AluSx SINE Alu -1 311 1 2429 168 41 53 chr9 114105038 114105433 -28166011 + MLT1D LTR MaLR 116 505 0 640 266 161 67 chr9 114105433 114105673 -28165771 - L2 LINE L2 -226 3087 2752 1493 146 32 71 chr9 114105704 114105984 -28165460 + AluJb SINE Alu 34 302 -10 23 78 0 0 chr9 114107080 114107131 -28164313 + AT_rich Low_complexity Low_complexity 1 51 0 239 360 48 11 chr9 114107151 114107337 -28164107 - HAL1b LINE L1 -746 602 410 1625 210 40 85 chr9 114107379 114107908 -28163536 + MLT2B2 LTR ERVL 1 505 -10 1986 160 0 7 chr9 114108476 114108770 -28162674 - AluJo SINE Alu -20 292 1 35 54 0 0 chr9 114108884 114108940 -28162504 + AT_rich Low_complexity Low_complexity 1 56 0 22 70 0 0 chr9 114109513 114109556 -28161888 + AT_rich Low_complexity Low_complexity 1 43 0 5769 99 36 2 chr9 114109561 114110445 -28160999 - L1MA3 LINE L1 -2 6303 5390 21 57 0 0 chr9 114110707 114110742 -28160702 + AT_rich Low_complexity Low_complexity 1 35 0 2235 103 13 0 chr9 114111045 114111346 -28160098 - AluSx SINE Alu -7 305 1 1703 156 4 11 chr9 114112250 114112520 -28158924 + AluJb SINE Alu 36 303 -9 447 267 0 0 chr9 114112999 114113085 -28158359 + MIR SINE MIR 29 114 -148 415 170 312 0 chr9 114113821 114113962 -28157482 + L1PBa LINE L1 979 1163 -5700 701 184 0 0 chr9 114113979 114114115 -28157329 + L1PBa LINE L1 1332 1467 -5396 2885 219 11 4 chr9 114114118 114114863 -28156581 + L1 LINE L1 3271 4020 -2126 4897 100 27 3 chr9 114114986 114115733 -28155711 - L1MA3 LINE L1 -151 6154 5390 21 57 0 0 chr9 114115995 114116030 -28155414 + AT_rich Low_complexity Low_complexity 1 35 0 1566 110 23 0 chr9 114116333 114116552 -28154892 - AluSg/x SINE Alu -7 303 80 852 219 53 41 chr9 114116552 114116871 -28154573 - LTR56 LTR ERV1 -122 323 1 550 144 0 0 chr9 114116873 114116963 -28154481 + Tigger3(Golem) DNA MER2_type 2939 3028 -1 2091 128 0 3 chr9 114117263 114117552 -28153892 + AluSx SINE Alu 1 288 -24 304 293 43 55 chr9 114117559 114117723 -28153721 + L1ME LINE L1 5658 5819 -302 276 174 0 0 chr9 114117751 114117797 -28153647 + AluSp/q SINE Alu 211 256 -47 356 376 50 2 chr9 114117871 114118053 -28153391 - MIR SINE MIR -64 144 3 1140 111 0 0 chr9 114118789 114118969 -28152475 + (TA)n Simple_repeat Simple_repeat 1 180 0 330 26 0 0 chr9 114118988 114119027 -28152417 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr9 114119053 114119074 -28152370 + AT_rich Low_complexity Low_complexity 1 21 0 2476 99 28 39 chr9 114119354 114119718 -28151726 + THE1B LTR MaLR 3 362 -2 249 299 77 8 chr9 114119989 114120106 -28151338 + MLT1L LTR MaLR 397 521 -94 1972 181 6 3 chr9 114120667 114121031 -28150413 + MLT1A1 LTR MaLR 1 365 0 2173 114 56 22 chr9 114121886 114122245 -28149199 + THE1C LTR MaLR 1 371 -4 2162 179 0 11 chr9 114122491 114122860 -28148584 + MLT1A1 LTR MaLR 1 365 0 706 218 0 8 chr9 114122884 114123008 -28148436 + FLAM_A SINE Alu 1 123 -10 1811 180 3 3 chr9 114123008 114123302 -28148142 - AluJo SINE Alu -18 294 1 27 0 0 0 chr9 114123309 114123336 -28148108 + AT_rich Low_complexity Low_complexity 1 27 0 592 292 42 93 chr9 114123337 114123809 -28147635 - MLT1K LTR MaLR -16 572 125 229 81 0 0 chr9 114124065 114124102 -28147342 - MSTB1 LTR MaLR -37 395 359 541 210 76 0 chr9 114124424 114124543 -28146901 + FLAM_A SINE Alu 4 131 -2 590 365 89 23 chr9 114124544 114125249 -28146195 - L2 LINE L2 -2463 851 100 2236 136 89 7 chr9 114125952 114126379 -28145065 + L1MB8 LINE L1 5493 5954 -230 263 161 0 0 chr9 114126407 114126469 -28144975 + L1MB8 LINE L1 6113 6174 -4 2286 163 20 45 chr9 114126526 114126969 -28144475 - MSTB1 LTR MaLR 0 432 1 636 162 51 17 chr9 114128246 114128363 -28143081 - MER5B DNA MER1_type -19 159 39 2121 131 0 0 chr9 114128364 114128654 -28142790 + AluSx SINE Alu 1 290 -22 239 200 0 36 chr9 114128677 114128732 -28142712 - MER5B DNA MER1_type -125 53 1 1758 127 94 4 chr9 114129091 114129358 -28142086 + AluSx SINE Alu 5 295 -17 21 0 0 0 chr9 114130654 114130675 -28140769 + AT_rich Low_complexity Low_complexity 1 21 0 1823 88 0 0 chr9 114131453 114131703 -28139741 - L1PA13 LINE L1 -1 6162 5913 1894 147 44 33 chr9 114131868 114132228 -28139216 - THE1B LTR MaLR 0 364 1 11311 100 15 2 chr9 114132228 114133788 -28137656 - THE1B-int LTR MaLR 0 1580 1 2158 121 39 36 chr9 114133788 114134151 -28137293 - THE1B LTR MaLR 0 364 1 210 368 192 18 chr9 114134182 114134782 -28136662 + L2 LINE L2 2211 2914 -400 288 53 0 0 chr9 114134823 114134861 -28136583 + (A)n Simple_repeat Simple_repeat 1 38 0 350 239 57 0 chr9 114134891 114134979 -28136465 - MIR SINE MIR -48 214 122 1715 319 58 8 chr9 114135558 114136166 -28135278 + MER115 DNA AcHobo 56 693 0 203 186 47 23 chr9 114136523 114136566 -28134878 - MER91B DNA MER1_type -115 75 32 432 0 0 0 chr9 114137140 114137188 -28134256 + (ATG)n Simple_repeat Simple_repeat 1 48 0 402 318 15 8 chr9 114137596 114137728 -28133716 + L2 LINE L2 3179 3311 -2 220 343 96 0 chr9 114138736 114138809 -28132635 - L2 LINE L2 -5 3308 3229 1420 152 15 4 chr9 114138844 114139107 -28132337 + L1MD3 LINE L1 7730 7995 0 234 0 0 0 chr9 114139522 114139548 -28131896 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1464 160 60 25 chr9 114140409 114140690 -28130754 - AluJo SINE Alu -19 293 3 24 32 0 0 chr9 114140695 114140726 -28130718 + AT_rich Low_complexity Low_complexity 1 31 0 2221 111 0 10 chr9 114140736 114141034 -28130410 + AluSx SINE Alu 1 295 -17 1672 151 4 4 chr9 114141046 114141305 -28130139 + AluJo SINE Alu 37 295 -17 450 0 0 0 chr9 114141308 114141358 -28130086 + (TA)n Simple_repeat Simple_repeat 1 50 0 410 265 54 14 chr9 114141370 114141517 -28129927 - MLT1J LTR MaLR -354 157 5 340 336 28 0 chr9 114141564 114141671 -28129773 + L2 LINE L2 2236 2345 -969 711 276 131 53 chr9 114141679 114142131 -28129313 + MLT1J LTR MaLR 19 505 -6 343 324 141 24 chr9 114142196 114142611 -28128833 + L2 LINE L2 2456 2970 -343 1380 91 0 0 chr9 114142774 114142950 -28128494 - AluSg/x SINE Alu -51 261 86 1836 152 0 3 chr9 114142952 114143278 -28128166 - AluJb SINE Alu 0 325 1 194 353 107 41 chr9 114143918 114144040 -28127404 - MIR3 SINE MIR -22 186 57 385 333 108 34 chr9 114144806 114145215 -28126229 - L1ME4a LINE L1 -207 5914 5476 1753 194 0 19 chr9 114145799 114146108 -28125336 - AluJb SINE Alu -9 303 1 267 258 237 21 chr9 114146137 114146230 -28125214 - MIR SINE MIR -121 141 29 23 0 0 0 chr9 114146369 114146392 -28125052 + AT_rich Low_complexity Low_complexity 1 23 0 2051 110 0 0 chr9 114147034 114147326 -28124118 - L1PA13 LINE L1 -10 6153 5862 3713 141 16 3 chr9 114147329 114148371 -28123073 + L1PA13 LINE L1 4805 5862 -299 2178 116 0 3 chr9 114148551 114148845 -28122599 - AluSx SINE Alu -19 293 1 299 113 19 0 chr9 114149292 114149345 -28122099 + CT-rich Low_complexity Low_complexity 1 54 0 1955 100 22 4 chr9 114150420 114150518 -28120926 + AluSx SINE Alu 28 123 -189 315 0 0 0 chr9 114150518 114150553 -28120891 + (CA)n Simple_repeat Simple_repeat 2 36 0 1955 100 22 4 chr9 114150553 114150724 -28120720 + AluSx SINE Alu 123 302 -10 439 290 45 13 chr9 114151215 114151370 -28120074 + MIR3 SINE MIR 43 202 -6 249 242 40 89 chr9 114151406 114151530 -28119914 - MIR SINE MIR -50 212 95 1317 156 0 5 chr9 114153121 114153326 -28118118 - AluJo SINE Alu -4 308 105 1208 92 0 0 chr9 114153348 114153511 -28117933 + AluY SINE Alu 143 305 -6 207 296 68 61 chr9 114153523 114153655 -28117789 - MIR SINE MIR -128 134 2 367 200 22 22 chr9 114153763 114153853 -28117591 - MER5B DNA MER1_type -84 94 5 384 191 0 0 chr9 114154378 114154462 -28116982 + (TA)n Simple_repeat Simple_repeat 2 85 0 2022 157 0 3 chr9 114154517 114154823 -28116621 + AluJo SINE Alu 1 305 -7 2357 102 0 0 chr9 114155186 114155479 -28115965 + AluSx SINE Alu 5 297 -15 343 0 43 0 chr9 114156295 114156342 -28115102 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 564 308 136 56 chr9 114156638 114157381 -28114063 + HAL1b LINE L1 65 695 -653 25 49 0 33 chr9 114157552 114157577 -28113867 + AT_rich Low_complexity Low_complexity 1 25 -34 1608 181 35 7 chr9 114157577 114157859 -28113585 - AluJb SINE Alu -22 290 1 25 49 0 33 chr9 114157859 114157894 -28113550 + AT_rich Low_complexity Low_complexity 25 59 0 501 117 9 63 chr9 114157894 114158005 -28113439 + L1MA7 LINE L1 6187 6291 0 1039 257 57 71 chr9 114158690 114159410 -28112034 + L1MEd LINE L1 508 1217 -4902 261 310 69 41 chr9 114159426 114159738 -28111706 + L1MEd LINE L1 1296 1625 -4685 1230 190 73 0 chr9 114159738 114160038 -28111406 - MER33 DNA MER1_type 0 324 3 261 310 69 41 chr9 114160038 114160144 -28111300 + L1MEd LINE L1 1625 1726 -4584 1794 146 30 0 chr9 114160193 114160460 -28110984 + AluSx SINE Alu 1 275 -37 225 0 0 0 chr9 114160465 114160490 -28110954 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 319 261 68 11 chr9 114160699 114160787 -28110657 - L2 LINE L2 -333 2980 2888 521 307 28 20 chr9 114161172 114161423 -28110021 + LTR16A1 LTR ERVL 205 457 0 21 0 0 0 chr9 114162741 114162762 -28108682 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 114163011 114163033 -28108411 + AT_rich Low_complexity Low_complexity 1 22 0 226 197 0 16 chr9 114163053 114163114 -28108330 + L1M LINE L1 5317 5376 -2432 2043 167 0 0 chr9 114163126 114163438 -28108006 + AluJo SINE Alu 1 312 0 207 0 0 0 chr9 114163798 114163821 -28107623 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 21 0 0 0 chr9 114164235 114164256 -28107188 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 114164304 114164325 -28107119 + AT_rich Low_complexity Low_complexity 1 21 0 263 240 40 0 chr9 114164590 114164665 -28106779 - MLT1G1 LTR MaLR -19 576 499 3163 134 2 16 chr9 114165103 114165661 -28105783 - L1P LINE L1 -888 5258 4709 965 206 0 0 chr9 114165862 114166017 -28105427 + AluJb SINE Alu 132 286 -26 31 26 0 0 chr9 114166023 114166061 -28105383 + AT_rich Low_complexity Low_complexity 1 38 0 4406 122 22 0 chr9 114166898 114167594 -28103850 + L1P LINE L1 2 712 -5434 610 216 124 60 chr9 114167802 114168020 -28103424 - MIR SINE MIR -13 249 18 719 263 50 6 chr9 114168390 114168569 -28102875 - MER5A DNA MER1_type -1 188 2 977 100 0 0 chr9 114168741 114168881 -28102563 + L1P LINE L1 1 140 -6006 3062 234 47 6 chr9 114168981 114170004 -28101440 - L1 LINE L1 -2453 3693 2629 1914 178 93 105 chr9 114170150 114170995 -28100449 + L1ME2 LINE L1 5320 6154 -10 323 266 0 0 chr9 114171044 114171138 -28100306 + L1ME LINE L1 3595 3688 -2458 293 206 108 0 chr9 114171372 114171474 -28099970 + L1ME LINE L1 5571 5683 -438 33 25 0 0 chr9 114171678 114171718 -28099726 + AT_rich Low_complexity Low_complexity 1 40 0 3895 150 13 15 chr9 114171811 114172524 -28098920 - L1MA7 LINE L1 -25 6266 5556 222 200 200 11 chr9 114172940 114173030 -28098414 - MIR SINE MIR -55 207 101 21 82 0 0 chr9 114173197 114173246 -28098198 + AT_rich Low_complexity Low_complexity 1 49 0 2861 49 5 11 chr9 114174369 114174738 -28096706 + L1PA8 LINE L1 5805 6171 -1 23 54 0 0 chr9 114176298 114176335 -28095109 + AT_rich Low_complexity Low_complexity 1 37 0 2420 132 9 21 chr9 114176377 114176809 -28094635 + L1MA3 LINE L1 5879 6305 0 327 286 44 0 chr9 114176890 114176981 -28094463 + MER5A DNA MER1_type 45 139 -50 1091 124 4 106 chr9 114176998 114177133 -28094311 - MLT1B LTR MaLR 0 390 286 2176 109 0 13 chr9 114177133 114177444 -28094000 - AluSg SINE Alu -3 307 1 1091 124 4 106 chr9 114177444 114177534 -28093910 - MLT1B LTR MaLR -104 286 188 401 77 0 0 chr9 114177585 114177637 -28093807 - Alu SINE Alu -259 52 1 683 167 17 0 chr9 114178021 114178141 -28093303 - MLT1B LTR MaLR -268 122 1 1858 166 0 0 chr9 114178367 114178657 -28092787 - AluJo SINE Alu -22 290 1 4215 39 0 0 chr9 114178678 114179186 -28092258 + L1PA5 LINE L1 5644 6151 -3 274 304 0 25 chr9 114179529 114179608 -28091836 - L3 LINE CR1 -519 1058 982 2132 95 7 36 chr9 114180333 114180638 -28090806 + AluSp SINE Alu 1 296 -17 590 290 12 24 chr9 114180765 114180934 -28090510 + MER5A DNA MER1_type 9 175 -14 685 228 73 116 chr9 114182627 114183008 -28088436 + MLT1A1 LTR MaLR 1 365 0 613 265 55 70 chr9 114183103 114183590 -28087854 + L1ME3A LINE L1 5414 5893 -277 450 258 19 7 chr9 114183947 114184102 -28087342 + L1M4 LINE L1 3543 3699 -2447 2366 104 26 16 chr9 114184102 114184355 -28087089 + L1MA4A LINE L1 5898 6158 -145 2238 82 4 0 chr9 114184355 114184636 -28086808 + AluSp SINE Alu 9 290 -23 2366 104 26 16 chr9 114184636 114184765 -28086679 + L1MA4A LINE L1 6158 6284 -19 395 216 90 42 chr9 114184853 114185020 -28086424 - L1M4 LINE L1 -2154 3992 3818 1813 144 18 0 chr9 114185021 114185326 -28086118 + AluJb SINE Alu 1 310 0 305 153 42 0 chr9 114185432 114185504 -28085940 - L1MB4 LINE L1 0 6180 6106 4962 146 36 3 chr9 114185537 114187122 -28084322 - L1MA4 LINE L1 -280 6020 4380 373 282 138 14 chr9 114187134 114187489 -28083955 - L1M4 LINE L1 -2415 3731 3333 3564 209 43 35 chr9 114187489 114188312 -28083132 - L1MB5 LINE L1 -8 6166 5331 1795 141 23 26 chr9 114188312 114188616 -28082828 - AluSx SINE Alu -9 303 1 3564 209 43 35 chr9 114188616 114188982 -28082462 - L1MB5 LINE L1 -843 5331 4969 193 144 65 14 chr9 114188982 114189121 -28082323 + (TA)n Simple_repeat Simple_repeat 2 147 0 204 182 81 20 chr9 114189155 114189303 -28082141 + (TA)n Simple_repeat Simple_repeat 2 158 0 2741 212 58 35 chr9 114189304 114190093 -28081351 - L1MB5 LINE L1 -1166 4980 4174 428 252 5 81 chr9 114190093 114190267 -28081177 + L1M4 LINE L1 3409 3564 -2582 2323 55 26 29 chr9 114190267 114190577 -28080867 + AluY SINE Alu 3 311 0 428 252 5 81 chr9 114190577 114190624 -28080820 + L1M4 LINE L1 3564 3613 -2533 317 246 0 0 chr9 114190629 114190698 -28080746 + FRAM SINE Alu 69 137 -29 1827 195 47 60 chr9 114190818 114191330 -28080114 + MLT1D LTR MaLR 1 505 0 1611 229 52 30 chr9 114191332 114191773 -28079671 + Charlie1a DNA MER1_type 18 473 -2288 2116 92 53 0 chr9 114191773 114192054 -28079390 - AluSp SINE Alu -17 296 1 1611 229 52 30 chr9 114192054 114192113 -28079331 + Charlie1a DNA MER1_type 473 529 -926 1185 260 20 69 chr9 114192116 114192389 -28079055 - L1MDb LINE L1 -5072 1337 1107 11477 24 0 0 chr9 114192389 114194496 -28076948 - L1PA3 LINE L1 0 6155 4046 1185 260 20 69 chr9 114194496 114194815 -28076629 - L1MDb LINE L1 -5302 1107 774 1374 328 56 38 chr9 114195574 114196287 -28075157 + L2 LINE L2 2032 2757 -557 2016 131 0 0 chr9 114196297 114196579 -28074865 - AluSx SINE Alu -30 282 1 25 0 0 0 chr9 114197411 114197436 -28074008 + AT_rich Low_complexity Low_complexity 1 25 0 7717 21 0 0 chr9 114197436 114198391 -28073053 - L1PA3 LINE L1 -3 6152 5198 433 18 0 0 chr9 114198391 114198446 -28072998 + L1PA3 LINE L1 5146 5200 -946 453 293 11 39 chr9 114198730 114198911 -28072533 - L2 LINE L2 -30 3283 3108 2268 107 7 0 chr9 114198914 114199213 -28072231 + AluSx SINE Alu 3 303 -9 243 346 87 0 chr9 114199281 114199408 -28072036 - L2 LINE L2 -491 2823 2686 208 200 20 20 chr9 114199603 114199653 -28071791 + (CATA)n Simple_repeat Simple_repeat 3 52 0 2216 115 0 3 chr9 114200284 114200580 -28070864 + AluSx SINE Alu 1 295 -17 1067 50 0 14 chr9 114200685 114200826 -28070618 - L1PA7 LINE L1 0 6154 6016 204 200 0 55 chr9 114200984 114201039 -28070405 + GA-rich Low_complexity Low_complexity 4 55 0 377 263 95 36 chr9 114201083 114201220 -28070224 + MER5A DNA MER1_type 2 146 -43 259 353 109 8 chr9 114201695 114201814 -28069630 + MIR SINE MIR 17 147 -61 218 266 0 47 chr9 114203369 114203433 -28068011 + L2 LINE L2 3251 3311 -2 1892 125 56 11 chr9 114203589 114203876 -28067568 + AluJb SINE Alu 1 300 -12 239 278 52 10 chr9 114203944 114204041 -28067403 + MARNA DNA Mariner 108 208 -378 30 69 0 0 chr9 114204620 114204678 -28066766 + AT_rich Low_complexity Low_complexity 1 58 0 27 49 0 0 chr9 114204892 114204933 -28066511 + AT_rich Low_complexity Low_complexity 1 41 0 2300 222 77 45 chr9 114205481 114205537 -28065907 + L1MC4 LINE L1 6718 6771 -1271 2153 109 0 0 chr9 114205537 114205843 -28065601 - AluSx SINE Alu 0 306 1 2300 222 77 45 chr9 114205843 114206605 -28064839 + L1MC4 LINE L1 6771 7563 -479 5091 86 26 32 chr9 114206609 114207424 -28064020 + L1PB1 LINE L1 5341 6150 -1 1216 213 49 18 chr9 114207462 114207791 -28063653 + L1MC4 LINE L1 7560 7898 -144 21 0 0 0 chr9 114208013 114208034 -28063410 + AT_rich Low_complexity Low_complexity 1 21 0 945 248 22 40 chr9 114208283 114208654 -28062790 + L1MC1 LINE L1 4206 4569 -1577 12276 97 11 44 chr9 114208659 114211069 -28060375 + L1PA7 LINE L1 6 2420 -4041 11430 55 1 0 chr9 114211069 114212512 -28058932 + HERV17 LTR ERV1 7183 8626 0 2565 56 0 0 chr9 114212512 114212836 -28058608 + LTR17 LTR ERV1 1 324 -456 22526 77 5 6 chr9 114212845 114215783 -28055661 + L1PA7 LINE L1 2403 5336 -1133 2245 68 40 24 chr9 114215783 114216079 -28055365 + AluY SINE Alu 1 301 -10 22526 77 5 6 chr9 114216079 114217213 -28054231 + L1PA7 LINE L1 5336 6469 0 311 187 33 44 chr9 114217232 114217323 -28054121 + L1MC1 LINE L1 4561 4650 -1496 4110 131 27 73 chr9 114217325 114218150 -28053294 + L1MC1 LINE L1 5547 6333 0 315 320 110 31 chr9 114218218 114218446 -28052998 - MIR SINE MIR -3 259 14 1173 151 83 23 chr9 114218486 114218704 -28052740 - AluJo SINE Alu -19 293 63 221 164 0 104 chr9 114218704 114218771 -28052673 + MIR SINE MIR 168 227 -35 414 272 37 29 chr9 114218871 114219007 -28052437 + MIR SINE MIR 111 247 -15 345 242 62 31 chr9 114219052 114219213 -28052231 + L1ME4a LINE L1 5726 5891 -230 186 43 0 0 chr9 114219243 114219266 -28052178 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2299 98 0 10 chr9 114219670 114219966 -28051478 + AluSg SINE Alu 1 293 -17 846 189 85 25 chr9 114220801 114221002 -28050442 + L1M4 LINE L1 805 1017 -5525 46 45 0 0 chr9 114221002 114221069 -28050375 + AT_rich Low_complexity Low_complexity 1 67 0 297 225 28 0 chr9 114221071 114221142 -28050302 + L1M4 LINE L1 1036 1108 -5438 863 226 37 46 chr9 114221143 114221164 -28050280 + L1M4 LINE L1 2895 2915 -3729 1572 80 0 84 chr9 114221164 114221403 -28050041 + AluSg/x SINE Alu 85 303 -9 863 226 37 46 chr9 114221403 114221704 -28049740 + L1M4 LINE L1 2915 3214 -3430 1046 268 44 31 chr9 114221716 114221817 -28049627 - L1ME3A LINE L1 -145 6019 5921 1636 182 34 3 chr9 114221817 114222114 -28049330 + AluJb SINE Alu 1 306 -6 1046 268 44 31 chr9 114222114 114222479 -28048965 - L1ME3A LINE L1 -243 5921 5542 299 161 25 62 chr9 114222509 114222590 -28048854 - MLT1G3 LTR MaLR -5 525 448 527 74 0 207 chr9 114222776 114222897 -28048547 - AluSg/x SINE Alu -132 180 85 333 229 0 0 chr9 114222919 114222989 -28048455 - L1M4b LINE L1 -5438 1421 1352 2355 83 3 0 chr9 114223082 114223371 -28048073 + AluSx SINE Alu 1 290 -22 2360 155 103 15 chr9 114223496 114223973 -28047471 + LTR44 LTR ERV1 1 519 0 324 0 0 0 chr9 114224001 114224037 -28047407 + (A)n Simple_repeat Simple_repeat 1 36 0 1655 233 140 3 chr9 114224310 114224876 -28046568 - L1ME1 LINE L1 -99 6067 5425 5891 207 57 71 chr9 114224994 114226507 -28044937 - L1MB8 LINE L1 0 6178 4646 2364 79 3 7 chr9 114226507 114226812 -28044632 - AluSc SINE Alu -5 304 1 5891 207 57 71 chr9 114226812 114227564 -28043880 - L1MB8 LINE L1 -1532 4646 3885 291 28 0 0 chr9 114227564 114227600 -28043844 + (TG)n Simple_repeat Simple_repeat 2 37 0 5891 207 57 71 chr9 114227600 114228540 -28042904 - L1MB8 LINE L1 -2293 3885 3063 1788 184 0 3 chr9 114228540 114228844 -28042600 - AluJo SINE Alu -7 305 3 5891 207 57 71 chr9 114228844 114229142 -28042302 - L1MB8 LINE L1 -3115 3063 2763 253 122 0 0 chr9 114229144 114229185 -28042259 - L1M4 LINE L1 -1542 4604 4564 653 175 0 0 chr9 114229237 114229351 -28042093 + L1MC1 LINE L1 6150 6263 -70 2066 141 3 13 chr9 114229726 114230039 -28041405 + AluJb SINE Alu 3 312 0 2199 88 3 3 chr9 114230040 114230323 -28041121 + AluSx SINE Alu 12 294 -18 3892 163 33 10 chr9 114230355 114231078 -28040366 - L1MC1 LINE L1 -2 6331 5592 198 91 0 0 chr9 114231180 114231213 -28040231 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 1202 248 132 59 chr9 114231251 114232452 -28038992 + L1ME LINE L1 140 1445 -4635 2045 133 3 7 chr9 114232761 114233055 -28038389 + AluSx SINE Alu 13 305 -7 308 271 81 97 chr9 114235412 114235670 -28035774 - MER112 DNA MER1_type -6 254 1 183 245 57 19 chr9 114236536 114236589 -28034855 + MIR3 SINE MIR 125 179 -29 261 135 0 0 chr9 114237095 114237147 -28034297 + (A)n Simple_repeat Simple_repeat 1 52 0 288 242 132 11 chr9 114237624 114237715 -28033729 + MIR SINE MIR 63 164 -98 34 65 0 0 chr9 114238289 114238351 -28033093 + AT_rich Low_complexity Low_complexity 1 62 0 2518 238 76 61 chr9 114239151 114239948 -28031496 + L1MC4 LINE L1 6842 7625 -417 1900 110 4 0 chr9 114239948 114240193 -28031251 + AluSx SINE Alu 42 287 -25 348 24 0 0 chr9 114240203 114240244 -28031200 + (CAT)n Simple_repeat Simple_repeat 1 41 0 2518 238 76 61 chr9 114240244 114240302 -28031142 + L1MC4 LINE L1 7633 7689 -353 1967 171 3 3 chr9 114240302 114240611 -28030833 + AluSx SINE Alu 1 309 -3 2518 238 76 61 chr9 114240611 114240926 -28030518 + L1MC4 LINE L1 7689 8042 0 189 195 0 0 chr9 114241623 114241664 -28029780 + GA-rich Low_complexity Low_complexity 2 42 0 1812 145 44 14 chr9 114242681 114242978 -28028466 + AluJo SINE Alu 2 307 -5 280 57 0 0 chr9 114243046 114243081 -28028363 + U2 snRNA snRNA 1 35 -153 1854 115 85 49 chr9 114243400 114243766 -28027678 + MLT1B LTR MaLR 1 379 -11 274 308 175 7 chr9 114244367 114244510 -28026934 - MIR3 SINE MIR -6 202 36 470 257 180 40 chr9 114244898 114245271 -28026173 + MLT1J LTR MaLR 79 503 -8 187 286 89 62 chr9 114245898 114246010 -28025434 - MIR3 SINE MIR -86 122 8 1828 166 0 3 chr9 114247667 114247973 -28023471 + AluJb SINE Alu 1 305 0 310 238 70 4 chr9 114249304 114249427 -28022017 + L1ME4a LINE L1 5707 5818 -303 386 228 47 27 chr9 114249437 114249586 -28021858 + L1ME4a LINE L1 5968 6119 -2 313 355 11 11 chr9 114251703 114251796 -28019648 + MIR3 SINE MIR 84 176 -32 209 323 193 4 chr9 114251876 114252010 -28019434 - MIR SINE MIR -74 188 32 26 0 0 0 chr9 114252205 114252231 -28019213 + AT_rich Low_complexity Low_complexity 1 26 0 2344 97 0 3 chr9 114252783 114253094 -28018350 + AluSg SINE Alu 1 310 0 306 208 13 0 chr9 114253960 114254037 -28017407 - L1MC5 LINE L1 -87 7874 7797 308 197 13 53 chr9 114254074 114254150 -28017294 + Tigger3(Golem) DNA MER2_type 1 73 -2956 13387 114 34 31 chr9 114254150 114256438 -28015006 - Tigger1 DNA MER2_type 0 2418 125 299 172 17 0 chr9 114256434 114256492 -28014952 + Tigger1 DNA MER2_type 70 128 -2290 * 427 195 13 0 chr9 114256492 114256569 -28014875 + Tigger3(Golem) DNA MER2_type 2951 3028 -1 295 231 153 26 chr9 114256597 114256826 -28014618 - L1MC5 LINE L1 -231 7730 7473 235 174 0 0 chr9 114256837 114256883 -28014561 - L1MC5 LINE L1 -554 7407 7362 297 0 0 0 chr9 114256927 114256960 -28014484 + (CA)n Simple_repeat Simple_repeat 2 34 0 2446 81 0 10 chr9 114257179 114257486 -28013958 - AluSp SINE Alu -9 304 1 229 345 106 0 chr9 114258379 114258492 -28012952 + MIR SINE MIR 18 142 -66 1918 157 0 10 chr9 114258557 114258862 -28012582 + AluJb SINE Alu 1 302 -10 252 0 0 0 chr9 114258887 114258915 -28012529 + (CAT)n Simple_repeat Simple_repeat 2 29 0 248 308 110 22 chr9 114258928 114259019 -28012425 + MIR SINE MIR 1 99 -163 258 345 35 9 chr9 114260553 114260666 -28010778 + L2 LINE L2 3179 3294 -19 2007 122 0 29 chr9 114260870 114261182 -28010262 - AluSx SINE Alu -9 303 1 325 298 43 21 chr9 114261670 114261811 -28009633 + L2 LINE L2 2900 3043 -229 204 286 79 0 chr9 114262851 114262914 -28008530 + L2 LINE L2 3187 3254 -18 252 254 109 43 chr9 114263140 114263278 -28008166 + L2 LINE L2 2156 2302 -1012 1041 334 149 24 chr9 114263402 114264075 -28007369 - L2 LINE L2 -481 2833 2077 243 252 54 18 chr9 114264200 114264311 -28007133 - L1ME LINE L1 -358 5804 5690 225 193 123 0 chr9 114265354 114265411 -28006033 - L3 LINE CR1 -320 1257 1194 509 276 58 38 chr9 114265906 114266199 -28005245 + LTR16A LTR ERVL 143 441 -9 2278 97 3 13 chr9 114266215 114266515 -28004929 + AluSq SINE Alu 2 298 -15 2069 98 0 4 chr9 114266877 114267151 -28004293 + AluSg SINE Alu 1 273 -37 206 286 226 8 chr9 114269458 114269591 -28001853 + L2 LINE L2 1606 1767 -1547 759 199 125 0 chr9 114269597 114269773 -28001671 - MER20 DNA MER1_type 0 219 22 723 311 35 4 chr9 114269799 114270027 -28001417 + L2 LINE L2 1764 1998 -1316 2217 100 0 17 chr9 114271475 114271774 -27999670 - AluSx SINE Alu -18 294 1 340 327 75 26 chr9 114272379 114272605 -27998839 + MIR SINE MIR 25 261 -1 621 171 157 0 chr9 114272672 114272812 -27998632 + L1MC4 LINE L1 7875 8036 -6 1157 229 106 52 chr9 114273494 114273518 -27997926 + L1MA4 LINE L1 16 37 -7528 1822 91 7 44 chr9 114273518 114273573 -27997871 + L1MA2 LINE L1 6018 6073 -231 2384 98 0 0 chr9 114273573 114273869 -27997575 + AluSx SINE Alu 1 296 -16 1822 91 7 44 chr9 114273869 114274111 -27997333 + L1MA2 LINE L1 6073 6304 0 1157 229 106 52 chr9 114274111 114274566 -27996878 + L1MA4 LINE L1 37 521 -7044 5306 221 39 42 chr9 114274575 114276105 -27995339 + L1MA4 LINE L1 1377 2902 -4663 4547 162 55 58 chr9 114276105 114277179 -27994265 - MER11C LTR ERVK 0 1071 1 5306 221 39 42 chr9 114277179 114277316 -27994128 + L1MA4 LINE L1 2902 3038 -4527 4585 186 45 31 chr9 114277479 114277989 -27993455 + L1MA4 LINE L1 3131 3632 -3933 1908 139 17 23 chr9 114277989 114278290 -27993154 + AluSx SINE Alu 1 299 -13 4585 186 45 31 chr9 114278290 114279268 -27992176 + L1MA4 LINE L1 3632 4645 -2920 330 73 176 0 chr9 114279262 114279330 -27992114 + L1 LINE L1 5671 5750 -1815 * 1148 136 183 38 chr9 114279335 114279671 -27991773 + MSTA LTR MaLR 1 426 -2 4872 175 45 13 chr9 114279673 114281522 -27989922 + L1MA4 LINE L1 5759 7662 -57 1375 199 96 0 chr9 114281540 114281822 -27989622 + AluJb SINE Alu 1 309 -3 2399 106 0 0 chr9 114282038 114282350 -27989094 + AluSx SINE Alu 1 312 0 316 266 298 14 chr9 114282697 114282915 -27988529 - L2 LINE L2 -2 3311 3032 653 290 37 49 chr9 114283853 114284098 -27987346 + MIR SINE MIR 11 252 -10 2293 86 0 17 chr9 114284195 114284496 -27986948 + AluSq SINE Alu 1 296 -17 21 71 0 0 chr9 114284620 114284662 -27986782 + AT_rich Low_complexity Low_complexity 1 42 0 1771 184 0 13 chr9 114285419 114285735 -27985709 - AluJb SINE Alu 0 312 1 504 191 11 0 chr9 114286570 114286659 -27984785 - 5S rRNA rRNA -31 90 1 224 294 20 39 chr9 114286678 114286780 -27984664 + L2 LINE L2 3173 3272 0 1297 191 141 0 chr9 114287301 114287599 -27983845 - MER58B DNA MER1_type 0 341 2 425 107 0 60 chr9 114287849 114287933 -27983511 + MER53 DNA DNA 99 177 -12 * 488 128 0 0 chr9 114287877 114287955 -27983489 - MER53 DNA DNA -111 78 1 911 249 159 15 chr9 114287957 114288346 -27983098 + L1MC4a LINE L1 5496 5940 -1868 2347 78 0 0 chr9 114289808 114290114 -27981330 + L1PA14 LINE L1 5852 6157 -4 21 36 0 0 chr9 114290114 114290142 -27981302 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr9 114290145 114290170 -27981274 + (TG)n Simple_repeat Simple_repeat 1 25 0 180 77 0 0 chr9 114290170 114290196 -27981248 + (GA)n Simple_repeat Simple_repeat 2 27 0 1741 156 9 25 chr9 114290336 114290651 -27980793 + AluJb SINE Alu 3 312 0 1336 150 4 22 chr9 114291957 114292184 -27979260 + AluJb SINE Alu 84 306 -6 2248 116 3 3 chr9 114292380 114292691 -27978753 + AluSq SINE Alu 1 311 -2 205 365 82 0 chr9 114293655 114293740 -27977704 + MIR SINE MIR 3 94 -168 21 0 0 0 chr9 114294525 114294546 -27976898 + AT_rich Low_complexity Low_complexity 1 21 0 254 125 52 21 chr9 114294684 114294780 -27976664 + (TA)n Simple_repeat Simple_repeat 2 100 0 369 0 0 0 chr9 114296326 114296367 -27975077 + (TG)n Simple_repeat Simple_repeat 2 42 0 201 196 0 0 chr9 114298291 114298342 -27973102 + A-rich Low_complexity Low_complexity 1 51 0 410 322 178 15 chr9 114299277 114299479 -27971965 - MIR SINE MIR -21 241 7 1977 96 10 61 chr9 114299921 114300233 -27971211 + AluSq SINE Alu 1 296 -17 23 33 0 0 chr9 114300890 114300920 -27970524 + AT_rich Low_complexity Low_complexity 1 30 0 218 333 0 16 chr9 114301494 114301557 -27969887 - L2 LINE L2 -22 3250 3189 1163 179 15 118 chr9 114301608 114301744 -27969700 + AluJb SINE Alu 2 86 -216 1696 144 0 22 chr9 114301744 114302014 -27969430 + AluJb SINE Alu 27 290 -22 1163 179 15 118 chr9 114302014 114302207 -27969237 + AluJb SINE Alu 86 297 -5 357 336 166 9 chr9 114302218 114302429 -27969015 - L2 LINE L2 -639 2675 2432 2083 151 23 3 chr9 114302536 114302888 -27968556 - MER46B DNA MER2_type -1 235 2 3273 183 60 55 chr9 114303274 114304240 -27967204 - Charlie1a DNA MER1_type 0 1455 485 880 235 130 54 chr9 114304243 114304520 -27966924 - Charlie1a DNA MER1_type -1156 299 2 436 291 0 61 chr9 114304521 114304686 -27966758 - MIR3 SINE MIR -48 160 6 671 203 0 0 chr9 114304758 114304881 -27966563 + FLAM_A SINE Alu 3 125 -8 1235 227 96 10 chr9 114305040 114305353 -27966091 + MER58B DNA MER1_type 1 340 -1 2255 113 0 0 chr9 114306309 114306611 -27964833 + AluSx SINE Alu 1 302 -10 448 280 52 38 chr9 114307075 114307364 -27964080 - L1ME LINE L1 -316 5805 5513 2163 125 0 0 chr9 114307365 114307677 -27963767 + AluSx SINE Alu 1 312 0 450 228 169 33 chr9 114308538 114308722 -27962722 - MIR SINE MIR -24 238 30 256 196 0 0 chr9 114309370 114309416 -27962028 + L1MC/D LINE L1 5724 5769 -2039 2119 119 0 26 chr9 114309619 114309931 -27961513 - AluSx SINE Alu -8 304 1 2007 152 0 0 chr9 114309931 114310232 -27961212 - AluSx SINE Alu -10 302 1 436 277 147 6 chr9 114310518 114310695 -27960749 + MIR SINE MIR 47 248 -14 2333 78 0 29 chr9 114310713 114311021 -27960423 - AluY SINE Alu -12 299 1 38 39 0 0 chr9 114311642 114311694 -27959750 + AT_rich Low_complexity Low_complexity 1 52 0 1552 141 110 11 chr9 114313377 114313640 -27957804 + AluJo SINE Alu 1 289 -23 1883 169 3 6 chr9 114314290 114314603 -27956841 - AluJb SINE Alu 0 312 1 444 176 24 0 chr9 114315068 114315153 -27956291 - FLAM SINE Alu -13 130 44 2273 77 40 0 chr9 114315916 114316215 -27955229 + AluY SINE Alu 1 311 0 32 26 0 0 chr9 114316215 114316254 -27955190 + AT_rich Low_complexity Low_complexity 1 39 0 2095 129 0 3 chr9 114316255 114316549 -27954895 + AluSx SINE Alu 1 293 -19 1149 147 118 5 chr9 114317978 114318189 -27953255 + MER46A DNA MER2_type 2 236 0 2123 137 0 0 chr9 114318283 114318582 -27952862 - AluSg SINE Alu -11 299 1 2005 118 52 0 chr9 114319738 114320027 -27951417 - AluSg SINE Alu -6 304 1 2251 116 3 0 chr9 114320027 114320328 -27951116 - AluSx SINE Alu -9 303 1 184 319 58 0 chr9 114320498 114320567 -27950877 - L2 LINE L2 -219 3053 2981 3440 60 2 2 chr9 114320711 114321157 -27950287 - L1PA6 LINE L1 0 6154 5709 461 276 115 35 chr9 114321651 114321851 -27949593 - MIR SINE MIR -3 259 39 25 0 0 0 chr9 114322135 114322160 -27949284 + AT_rich Low_complexity Low_complexity 1 25 0 1415 211 49 11 chr9 114322162 114322447 -27948997 - AluJo SINE Alu -16 296 1 212 316 40 13 chr9 114322600 114322676 -27948768 + MIR SINE MIR 161 238 -24 32 26 0 0 chr9 114322756 114322795 -27948649 + AT_rich Low_complexity Low_complexity 1 39 0 744 133 94 22 chr9 114323027 114323208 -27948236 + L1MA4 LINE L1 6100 6293 -7 24 53 0 0 chr9 114323452 114323490 -27947954 + AT_rich Low_complexity Low_complexity 1 38 0 307 221 186 35 chr9 114323733 114323878 -27947566 + L1M4 LINE L1 2743 2909 -3237 464 248 141 0 chr9 114324038 114324159 -27947285 + MIR SINE MIR 47 184 -78 288 208 94 0 chr9 114324431 114324527 -27946917 + L1MA9 LINE L1 6170 6274 -38 22 35 0 0 chr9 114324527 114324556 -27946888 + AT_rich Low_complexity Low_complexity 1 29 0 299 237 11 32 chr9 114324699 114324792 -27946652 + L2 LINE L2 2605 2695 -619 318 176 176 14 chr9 114325154 114325228 -27946216 + L2 LINE L2 3181 3266 -6 281 259 179 27 chr9 114325235 114325347 -27946097 - L2 LINE L2 -471 2843 2715 303 224 61 20 chr9 114325462 114325560 -27945884 - MER117 DNA MER1_type -81 116 15 2079 140 10 0 chr9 114325679 114325987 -27945457 + AluJo SINE Alu 1 311 -1 21 57 0 0 chr9 114326048 114326083 -27945361 + AT_rich Low_complexity Low_complexity 1 35 0 437 156 78 0 chr9 114327083 114327173 -27944271 + L1MC5 LINE L1 7370 7466 -495 251 111 56 122 chr9 114327225 114327315 -27944129 + L1MC5 LINE L1 7625 7708 -253 464 255 71 0 chr9 114327328 114327469 -27943975 + L1ME3 LINE L1 6011 6161 -1 261 245 82 27 chr9 114327477 114327624 -27943820 + L1MC5 LINE L1 7695 7849 -112 183 204 0 0 chr9 114327743 114327792 -27943652 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 * 1876 189 162 130 chr9 114327783 114327995 -27943449 + L1MC3 LINE L1 6651 6855 -930 1778 174 0 10 chr9 114327995 114328293 -27943151 + AluJb SINE Alu 1 295 -17 1876 189 162 130 chr9 114328293 114328519 -27942925 + L1MC3 LINE L1 6855 7072 -713 364 211 10 77 chr9 114328519 114328623 -27942821 + MLT1F1 LTR MaLR 37 133 -434 1876 189 162 130 chr9 114328623 114329031 -27942413 + L1MC3 LINE L1 7072 7631 -154 1629 125 24 104 chr9 114329731 114330068 -27941376 - AluJo SINE Alu -2 310 1 2550 185 59 33 chr9 114330179 114330237 -27941207 + MER68 LTR ERV1 1 56 -506 2136 109 3 0 chr9 114330237 114330542 -27940902 + AluY SINE Alu 1 306 0 2550 185 59 33 chr9 114330542 114331028 -27940416 + MER68 LTR ERV1 56 560 -2 288 274 0 20 chr9 114331034 114331136 -27940308 - L1 LINE L1 -1088 5058 4959 263 315 22 0 chr9 114331355 114331444 -27940000 - MIR SINE MIR -87 121 31 756 335 112 28 chr9 114331927 114332830 -27938614 - L2 LINE L2 -1141 2173 1195 820 259 102 62 chr9 114333678 114334144 -27937300 + MER77 LTR ERV1 219 601 -4 23 86 0 0 chr9 114334148 114334206 -27937238 + AT_rich Low_complexity Low_complexity 1 58 0 814 134 34 0 chr9 114334295 114334414 -27937030 - FLAM_C SINE Alu -10 133 11 2428 216 78 74 chr9 114334904 114335923 -27935521 + L1M4 LINE L1 3584 4606 -1540 1109 257 61 31 chr9 114336107 114336211 -27935233 + L1M4 LINE L1 4640 4739 -1407 1930 153 0 16 chr9 114336211 114336524 -27934920 + AluJb SINE Alu 1 308 -4 1109 257 61 31 chr9 114336524 114336743 -27934701 + L1M4 LINE L1 4739 4981 -1165 2089 139 22 35 chr9 114336743 114337110 -27934334 - THE1B LTR MaLR -2 362 1 1109 257 61 31 chr9 114337110 114337283 -27934161 + L1M4 LINE L1 4981 5147 -999 401 297 256 2 chr9 114337330 114337771 -27933673 + L1ME LINE L1 3976 4528 -1618 2234 112 3 13 chr9 114337772 114338075 -27933369 - AluSx SINE Alu -8 304 5 346 245 195 31 chr9 114338097 114338256 -27933188 - MLT1I LTR MaLR -7 402 218 346 158 35 0 chr9 114338352 114338409 -27933035 - MLT1I LTR MaLR -341 68 10 229 254 97 74 chr9 114338538 114338755 -27932689 + L1ME LINE L1 4652 4873 -1273 * 399 259 115 33 chr9 114338750 114338983 -27932461 + L1ME LINE L1 5406 5650 -471 1703 162 46 36 chr9 114339184 114339486 -27931958 + AluJb SINE Alu 1 305 -7 243 250 36 0 chr9 114339805 114339861 -27931583 + polypurine Low_complexity Low_complexity 3 60 0 800 100 0 2 chr9 114339935 114340184 -27931260 + AluSp SINE Alu 1 295 -18 21 0 0 0 chr9 114340184 114340205 -27931239 + AT_rich Low_complexity Low_complexity 1 21 0 2217 90 0 14 chr9 114340291 114340580 -27930864 + AluSq SINE Alu 1 285 -28 36 70 0 0 chr9 114340620 114340691 -27930753 + AT_rich Low_complexity Low_complexity 1 71 0 1842 155 3 0 chr9 114340793 114341077 -27930367 + AluJo SINE Alu 9 293 -19 2298 101 7 0 chr9 114341200 114341507 -27929937 + AluSg SINE Alu 1 309 -1 360 0 0 0 chr9 114341650 114341690 -27929754 + (CA)n Simple_repeat Simple_repeat 2 41 0 1171 215 163 0 chr9 114341691 114341942 -27929502 - AluJo SINE Alu -9 293 2 350 50 75 50 chr9 114342228 114342308 -27929136 + GA-rich Low_complexity Low_complexity 4 85 0 1594 144 12 0 chr9 114342966 114343209 -27928235 + AluSx SINE Alu 63 308 -4 342 248 51 26 chr9 114343293 114343410 -27928034 - MIR SINE MIR -108 154 35 261 75 0 0 chr9 114343651 114343691 -27927753 + (GA)n Simple_repeat Simple_repeat 2 41 0 1093 141 6 6 chr9 114344120 114344283 -27927161 + AluSg/x SINE Alu 130 292 -18 1925 108 18 11 chr9 114344285 114344563 -27926881 + AluSg SINE Alu 1 280 -30 2468 65 3 0 chr9 114344563 114344854 -27926590 + AluY SINE Alu 2 293 -18 2067 119 3 3 chr9 114345350 114345643 -27925801 - AluSg SINE Alu -17 293 1 378 0 0 0 chr9 114345780 114345822 -27925622 + (CA)n Simple_repeat Simple_repeat 1 42 0 263 372 0 0 chr9 114346015 114346109 -27925335 - Tigger8 DNA MER2_type -570 96 3 1785 168 10 7 chr9 114346854 114347157 -27924287 + AluJo SINE Alu 1 304 -8 996 115 0 32 chr9 114347157 114347313 -27924131 + AluJo/FRAM SINE Alu 159 309 -3 1671 137 20 8 chr9 114347434 114347689 -27923755 + AluJb SINE Alu 41 298 -14 209 132 0 26 chr9 114348317 114348355 -27923089 + (TA)n Simple_repeat Simple_repeat 2 38 0 433 298 67 0 chr9 114348684 114348718 -27922726 - MIR SINE MIR -61 201 171 1994 155 0 0 chr9 114348718 114349027 -27922417 + AluJo SINE Alu 1 309 -3 433 298 67 0 chr9 114349027 114349170 -27922274 - MIR SINE MIR -91 171 12 343 378 66 10 chr9 114349329 114349739 -27921705 + L2 LINE L2 2420 2852 -462 21 0 0 0 chr9 114349749 114349770 -27921674 + AT_rich Low_complexity Low_complexity 1 21 0 308 285 69 15 chr9 114349806 114349936 -27921508 - MIR SINE MIR -75 187 51 2179 121 0 7 chr9 114350486 114350784 -27920660 + AluSx SINE Alu 1 296 -16 871 90 0 0 chr9 114351608 114351719 -27919725 - AluSp/q SINE Alu -6 307 197 1820 143 0 18 chr9 114351719 114351991 -27919453 - AluSx SINE Alu -35 277 11 1153 78 7 0 chr9 114351993 114352135 -27919309 - AluSp SINE Alu -170 143 1 2068 123 3 10 chr9 114352136 114352444 -27919000 - AluSx SINE Alu -6 306 1 367 216 103 0 chr9 114352718 114352815 -27918629 + MIR SINE MIR 143 249 -13 2138 140 0 0 chr9 114352934 114353234 -27918210 - AluJb SINE Alu -12 300 1 2286 97 0 0 chr9 114353280 114353597 -27917847 + AluSg SINE Alu 1 317 0 321 253 116 0 chr9 114354135 114354230 -27917214 + MIR SINE MIR 117 222 -40 354 63 53 168 chr9 114354310 114354349 -27917095 + L1MB3 LINE L1 6099 6122 -61 2086 127 10 0 chr9 114354349 114354648 -27916796 + AluSg SINE Alu 1 302 -8 354 63 53 168 chr9 114354648 114354703 -27916741 + L1MB3 LINE L1 6122 6182 -1 2209 113 0 7 chr9 114354732 114355032 -27916412 + AluSg SINE Alu 1 298 -12 2368 113 0 0 chr9 114355321 114355631 -27915813 - AluSx SINE Alu -2 310 1 3966 162 28 24 chr9 114356092 114356248 -27915196 + L1MB3 LINE L1 5421 5575 -608 2478 63 0 32 chr9 114356248 114356564 -27914880 + AluY SINE Alu 1 306 -5 3966 162 28 24 chr9 114356564 114357167 -27914277 + L1MB3 LINE L1 5575 6183 0 274 246 64 45 chr9 114357372 114357482 -27913962 + MIR SINE MIR 95 206 -56 23 0 0 0 chr9 114357850 114357873 -27913571 + GC_rich Low_complexity Low_complexity 1 23 0 32 86 0 0 chr9 114358418 114358499 -27912945 + GC_rich Low_complexity Low_complexity 1 81 0 21 0 0 0 chr9 114358705 114358726 -27912718 + GC_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr9 114358812 114358837 -27912607 + (CCG)n Simple_repeat Simple_repeat 1 25 0 266 223 32 32 chr9 114358940 114359034 -27912410 + (CCCG)n Simple_repeat Simple_repeat 2 95 0 29 60 0 0 chr9 114359093 114359143 -27912301 + GC_rich Low_complexity Low_complexity 1 50 0 26 30 0 0 chr9 114359224 114359257 -27912187 + GC_rich Low_complexity Low_complexity 1 33 0 2532 53 0 7 chr9 114360081 114360385 -27911059 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr9 114361022 114361043 -27910401 + AT_rich Low_complexity Low_complexity 1 21 0 2484 81 3 0 chr9 114361045 114361355 -27910089 - AluSp SINE Alu -2 311 1 569 247 160 31 chr9 114361594 114361788 -27909656 - MIR SINE MIR -32 230 12 425 194 193 32 chr9 114361790 114361813 -27909631 - L1MC4a LINE L1 -302 5819 5801 2526 80 0 0 chr9 114361813 114362115 -27909329 - AluSx SINE Alu -10 302 1 425 194 193 32 chr9 114362115 114362296 -27909148 - L1MC4a LINE L1 -320 5801 5617 1582 198 3 7 chr9 114362818 114363111 -27908333 + AluJb SINE Alu 1 292 -20 273 163 0 0 chr9 114363122 114363171 -27908273 + GA-rich Low_complexity Low_complexity 2 50 0 671 168 0 0 chr9 114363181 114363294 -27908150 + FLAM_A SINE Alu 13 125 -17 2206 106 0 3 chr9 114363337 114363620 -27907824 + AluSp SINE Alu 1 282 -31 31 0 0 0 chr9 114363620 114363651 -27907793 + AT_rich Low_complexity Low_complexity 1 31 0 741 169 31 8 chr9 114363749 114363879 -27907565 + FLAM_C SINE Alu 1 133 0 2400 98 0 6 chr9 114364471 114364786 -27906658 - AluSq SINE Alu 0 313 1 2454 73 0 29 chr9 114365007 114365322 -27906122 + AluY SINE Alu 1 306 -5 679 176 59 49 chr9 114365375 114365579 -27905865 - Charlie2 DNA MER1_type -7 2855 2650 182 0 0 97 chr9 114365602 114365633 -27905811 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2703 196 46 90 chr9 114365654 114365702 -27905742 - MER21A LTR ERV1 -19 912 863 1941 145 7 3 chr9 114365702 114366017 -27905427 + AluSx SINE Alu 1 316 0 2703 196 46 90 chr9 114366017 114366701 -27904743 - MER21A LTR ERV1 -68 863 211 1045 113 0 0 chr9 114366717 114366850 -27904594 - AluSp SINE Alu -180 133 1 460 202 0 11 chr9 114366850 114366939 -27904505 - MER39 LTR ERV1 -353 354 267 * 637 109 94 179 chr9 114366922 114367016 -27904428 - MER21A LTR ERV1 -733 198 128 2369 104 0 0 chr9 114367016 114367323 -27904121 - AluSx SINE Alu -5 307 1 637 109 94 179 chr9 114367323 114367429 -27904015 - MER21A LTR ERV1 -803 128 15 685 199 148 27 chr9 114367438 114367626 -27903818 - Charlie2 DNA MER1_type -225 2637 2473 2362 86 3 0 chr9 114367626 114367916 -27903528 - AluSc SINE Alu -18 291 1 685 199 148 27 chr9 114367916 114368024 -27903420 - Charlie2 DNA MER1_type -389 2473 2305 911 121 0 0 chr9 114368068 114368192 -27903252 - FLAM_A SINE Alu -6 127 4 304 213 13 0 chr9 114368204 114368279 -27903165 - Charlie2 DNA MER1_type -553 2309 2234 1279 152 0 70 chr9 114368279 114368347 -27903097 + AluJo SINE Alu 82 153 -159 2454 87 0 0 chr9 114368347 114368645 -27902799 + AluSg SINE Alu 1 298 -12 1279 152 0 70 chr9 114368645 114368820 -27902624 + AluJo SINE Alu 153 308 -4 267 103 0 0 chr9 114368838 114368877 -27902567 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 2006 144 0 0 chr9 114368946 114369238 -27902206 + AluSx SINE Alu 1 292 -20 555 259 65 61 chr9 114369239 114369502 -27901942 - Charlie2 DNA MER1_type -2475 307 44 2380 94 0 0 chr9 114369615 114369914 -27901530 - AluSx SINE Alu -13 299 1 226 344 95 11 chr9 114370029 114370218 -27901226 + L2 LINE L2 2277 2481 -833 289 227 84 34 chr9 114370255 114370374 -27901070 - LTR67 LTR ERVL -1 556 432 1780 120 109 37 chr9 114371159 114371509 -27899935 + THE1C LTR MaLR 1 375 0 2250 109 0 0 chr9 114371664 114372003 -27899441 - AluSx SINE Alu 0 339 1 1073 196 101 71 chr9 114372058 114372112 -27899332 + LTR56 LTR ERV1 9 60 -385 2030 138 0 0 chr9 114372112 114372446 -27898998 + AluSx SINE Alu 1 334 0 1073 196 101 71 chr9 114372446 114372814 -27898630 + LTR56 LTR ERV1 60 445 0 1759 119 0 107 chr9 114372985 114373303 -27898141 + AluSx SINE Alu 1 284 -28 355 320 155 37 chr9 114373390 114373604 -27897840 - L2 LINE L2 -576 2738 2551 2560 60 3 0 chr9 114373604 114373905 -27897539 + AluSp SINE Alu 1 302 -11 355 320 155 37 chr9 114373905 114374314 -27897130 - L2 LINE L2 -763 2551 2041 774 152 0 73 chr9 114374349 114374500 -27896944 + FLAM_C SINE Alu 4 143 0 1930 158 3 3 chr9 114374575 114374879 -27896565 + AluJb SINE Alu 3 306 -6 1254 180 19 0 chr9 114375130 114375341 -27896103 - MLT1A1 LTR MaLR -1 364 150 974 151 8 143 chr9 114375342 114375521 -27895923 - AluJb SINE Alu -17 295 156 2131 101 0 42 chr9 114375521 114375828 -27895616 - AluSx SINE Alu -17 295 2 974 151 8 143 chr9 114375828 114375893 -27895551 - AluJb SINE Alu -156 156 84 1574 181 66 0 chr9 114375894 114376182 -27895262 - AluJo SINE Alu -5 307 1 800 159 7 40 chr9 114376189 114376201 -27895243 - MLT1A1 LTR MaLR -215 150 139 6756 175 108 70 chr9 114376201 114377893 -27893551 + MER52A LTR ERV1 1 1755 0 800 159 7 40 chr9 114377893 114378031 -27893413 - MLT1A1 LTR MaLR -226 139 5 2223 118 0 0 chr9 114378079 114378375 -27893069 - AluSx SINE Alu -15 297 2 3059 118 33 0 chr9 114378497 114378980 -27892464 + L1MA4 LINE L1 5327 5825 -475 775 156 0 2 chr9 114378980 114379231 -27892213 + AluJ SINE Alu 1 305 -7 2719 163 12 2 chr9 114379234 114379714 -27891730 + L1MA4 LINE L1 5816 6300 0 2150 96 0 87 chr9 114379734 114379881 -27891563 + AluSc SINE Alu 1 104 -205 243 0 0 0 chr9 114379881 114379908 -27891536 + (TA)n Simple_repeat Simple_repeat 1 27 0 2150 96 0 87 chr9 114379908 114380093 -27891351 + AluSc SINE Alu 104 304 -5 2361 79 3 10 chr9 114380351 114380654 -27890790 + AluSp SINE Alu 7 307 -6 801 329 35 14 chr9 114380690 114381037 -27890407 - HAL1 LINE L1 -1594 913 560 2228 119 0 10 chr9 114381061 114381372 -27890072 - AluSg SINE Alu -2 308 1 1620 251 79 11 chr9 114381497 114382030 -27889414 + L1MC4 LINE L1 7000 7568 -474 2249 116 0 3 chr9 114382034 114382336 -27889108 + AluSq SINE Alu 1 301 -12 1113 139 0 23 chr9 114382336 114382499 -27888945 + AluSg/x SINE Alu 132 292 -18 2417 77 0 7 chr9 114382499 114382809 -27888635 + AluY SINE Alu 1 308 -3 906 141 0 7 chr9 114382851 114382986 -27888458 + AluJo SINE Alu 1 134 -178 527 254 67 49 chr9 114383030 114383314 -27888130 + L1MC4 LINE L1 7637 7925 -117 333 109 0 0 chr9 114383376 114383431 -27888013 + (TG)n Simple_repeat Simple_repeat 1 55 0 445 248 16 8 chr9 114383433 114383554 -27887890 + L1MC4 LINE L1 7918 8039 -3 2173 121 3 0 chr9 114384008 114384313 -27887131 + AluSx SINE Alu 1 306 -6 2519 62 0 10 chr9 114384501 114384808 -27886636 + AluY SINE Alu 1 304 -7 1955 151 7 0 chr9 114384810 114385109 -27886335 + AluJb SINE Alu 1 301 -11 198 103 0 0 chr9 114385395 114385424 -27886020 + (A)n Simple_repeat Simple_repeat 1 29 0 1566 171 76 0 chr9 114385426 114385717 -27885727 + AluJb SINE Alu 1 311 0 292 229 71 14 chr9 114385748 114385818 -27885626 + MIR SINE MIR 11 84 -178 240 88 0 0 chr9 114386087 114386121 -27885323 + AluSx SINE Alu 1 34 -274 4997 161 61 57 chr9 114386123 114387190 -27884254 + MER11C LTR ERVK 1 1071 0 1902 103 0 39 chr9 114387190 114387472 -27883972 + AluSx SINE Alu 31 301 -11 1338 101 5 11 chr9 114387477 114387665 -27883779 + AluSg/x SINE Alu 121 307 -3 1634 168 0 36 chr9 114388091 114388400 -27883044 - AluJo SINE Alu -14 298 1 380 176 15 0 chr9 114388400 114388468 -27882976 - FLAM_A SINE Alu -6 127 59 2058 145 0 0 chr9 114388528 114388832 -27882612 + AluSx SINE Alu 1 304 -8 1850 132 60 4 chr9 114389164 114389445 -27881999 - AluSx SINE Alu -15 297 1 1651 122 133 20 chr9 114390160 114390406 -27881038 + LTR23 LTR ERV1 1 218 -219 1629 166 29 32 chr9 114390406 114390714 -27880730 + AluJo SINE Alu 3 309 -3 1651 122 133 20 chr9 114390714 114390840 -27880604 + LTR23 LTR ERV1 218 437 0 306 282 100 57 chr9 114390979 114391126 -27880318 + L2 LINE L2 178 317 -2997 1354 156 135 107 chr9 114391126 114391518 -27879926 + MER57A LTR ERV1 1 403 0 306 282 100 57 chr9 114391518 114391721 -27879723 + L2 LINE L2 317 543 -2771 264 191 32 0 chr9 114391830 114391893 -27879551 - L1MA10 LINE L1 -1 6333 6269 2291 97 3 0 chr9 114391896 114392184 -27879260 + AluSx SINE Alu 4 292 -20 1558 208 76 38 chr9 114392241 114392689 -27878755 - L1ME1 LINE L1 -60 6106 5642 * 2340 194 56 30 chr9 114392684 114392977 -27878467 - L1ME1 LINE L1 -30 6136 5821 5171 124 30 43 chr9 114392977 114393326 -27878118 - LTR39 LTR ERV1 0 783 431 2295 91 3 3 chr9 114393326 114393622 -27877822 + AluSp SINE Alu 1 296 -17 5171 124 30 43 chr9 114393622 114394065 -27877379 - LTR39 LTR ERV1 -352 431 1 2340 194 56 30 chr9 114394065 114394307 -27877137 - L1ME1 LINE L1 -345 5821 5587 2275 88 0 3 chr9 114394310 114394625 -27876819 - AluSx SINE Alu 0 314 1 2035 141 7 0 chr9 114394708 114395013 -27876431 - AluJo SINE Alu -5 307 1 863 168 0 0 chr9 114395015 114395146 -27876298 - FLAM_A SINE Alu -2 131 1 540 309 133 35 chr9 114395173 114395495 -27875949 + L2 LINE L2 990 1279 -2035 2313 84 0 20 chr9 114395495 114395793 -27875651 - AluSg SINE Alu -18 292 1 540 309 133 35 chr9 114395793 114396078 -27875366 + L2 LINE L2 1279 1657 -1657 189 0 0 0 chr9 114396114 114396135 -27875309 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 182 188 0 0 chr9 114396524 114396556 -27874888 + L2 LINE L2 448 479 -2835 211 299 23 35 chr9 114396556 114396643 -27874801 + MIR SINE MIR 42 127 -81 2461 84 0 0 chr9 114396730 114397039 -27874405 + AluSg SINE Alu 1 309 -1 2129 98 26 33 chr9 114397178 114397485 -27873959 + AluSx SINE Alu 1 305 -7 544 240 0 16 chr9 114397507 114397632 -27873812 + L1ME3A LINE L1 5797 5919 -251 2292 101 3 3 chr9 114397633 114397941 -27873503 - AluSg SINE Alu -2 308 1 187 286 16 16 chr9 114398390 114398453 -27872991 + MER5A DNA MER1_type 119 181 -8 2317 107 7 3 chr9 114398641 114398951 -27872493 - AluSp SINE Alu -2 311 1 1041 271 207 17 chr9 114399215 114399849 -27871595 - L2 LINE L2 0 3313 2555 705 196 14 101 chr9 114400488 114400697 -27870747 - MER20 DNA MER1_type -12 207 17 252 324 72 9 chr9 114400755 114400866 -27870578 + L2 LINE L2 3196 3313 0 214 301 68 53 chr9 114401156 114401289 -27870155 - L2 LINE L2 -212 3060 2926 2344 99 0 7 chr9 114401851 114402155 -27869289 + AluSq SINE Alu 1 302 -11 338 313 72 24 chr9 114402932 114403098 -27868346 + MIR SINE MIR 28 201 -61 375 168 188 20 chr9 114403304 114403405 -27868039 + MER3 DNA MER1_type 92 209 0 2063 95 32 0 chr9 114403897 114404182 -27867262 + AluSp SINE Alu 1 294 -19 293 196 0 0 chr9 114404402 114404453 -27866991 - MER66B LTR ERV1 -140 346 296 251 164 45 134 chr9 114404866 114404933 -27866511 + MER21B LTR ERV1 45 105 -758 3203 183 80 38 chr9 114405040 114405774 -27865670 + MER21B LTR ERV1 98 862 -1 510 17 0 0 chr9 114405790 114405849 -27865595 + (TA)n Simple_repeat Simple_repeat 2 60 0 1035 167 0 32 chr9 114406062 114406248 -27865196 + AluJo SINE Alu 121 300 -12 2327 95 7 0 chr9 114406404 114406709 -27864735 - AluSq SINE Alu -6 307 1 1571 179 3 30 chr9 114406713 114407014 -27864430 - AluJo SINE Alu -17 295 3 1592 149 9 79 chr9 114407060 114407376 -27864068 + AluJo SINE Alu 1 294 -18 1105 215 162 26 chr9 114407378 114407718 -27863726 + MLT1D LTR MaLR 120 505 0 1378 110 0 0 chr9 114407787 114407969 -27863475 + AluSg/x SINE Alu 128 309 -3 1568 166 46 11 chr9 114408433 114408716 -27862728 + AluJb SINE Alu 1 293 -19 238 338 68 0 chr9 114409470 114409544 -27861900 - L2 LINE L2 -54 3259 3181 1416 270 53 40 chr9 114409544 114409752 -27861692 - LTR16B LTR ERVL -4 460 256 2412 76 0 3 chr9 114409752 114410056 -27861388 - AluSg SINE Alu -7 303 1 1416 270 53 40 chr9 114410056 114410299 -27861145 - LTR16B LTR ERVL -208 256 3 205 171 0 0 chr9 114410397 114410432 -27861012 - L2 LINE L2 -246 3026 2992 2152 120 0 10 chr9 114410579 114410878 -27860566 - AluSc SINE Alu -13 296 1 41 30 0 15 chr9 114410913 114410931 -27860513 + AT_rich Low_complexity Low_complexity 1 18 -47 1815 123 48 27 chr9 114410931 114411224 -27860220 - AluSx SINE Alu -13 299 1 41 30 0 15 chr9 114411224 114411271 -27860173 + AT_rich Low_complexity Low_complexity 18 65 0 2279 89 0 20 chr9 114411271 114411575 -27859869 + AluY SINE Alu 1 298 -13 1045 118 147 63 chr9 114411697 114411935 -27859509 - Tigger2 DNA MER2_type 0 2718 2461 4462 127 24 50 chr9 114411966 114412260 -27859184 - Tigger2 DNA MER2_type -1953 765 465 1957 133 31 0 chr9 114412260 114412546 -27858898 - AluSx SINE Alu -17 295 1 4462 127 24 50 chr9 114412546 114412674 -27858770 - Tigger2 DNA MER2_type -2253 465 335 1773 185 0 0 chr9 114412674 114412960 -27858484 - AluJb SINE Alu -26 286 1 4462 127 24 50 chr9 114412960 114413266 -27858178 - Tigger2 DNA MER2_type -2383 335 55 1500 179 91 7 chr9 114413266 114413540 -27857904 + AluJo SINE Alu 1 297 -15 4462 127 24 50 chr9 114413540 114413594 -27857850 - Tigger2 DNA MER2_type -2663 55 1 2404 78 7 3 chr9 114413865 114414172 -27857272 + AluSx SINE Alu 1 308 -4 229 308 50 45 chr9 114414176 114414374 -27857070 + L1MC/D LINE L1 5286 5484 -2324 2282 97 10 0 chr9 114414515 114414814 -27856630 + AluSp SINE Alu 1 302 -11 1688 173 0 39 chr9 114414887 114415199 -27856245 + AluJb SINE Alu 7 306 -6 804 255 19 61 chr9 114415814 114416077 -27855367 + MIR SINE MIR 11 262 0 2241 112 0 0 chr9 114416122 114416418 -27855026 - AluY SINE Alu -11 300 5 529 281 50 12 chr9 114418508 114418668 -27852776 + MIR3 SINE MIR 20 185 -23 752 207 0 22 chr9 114418816 114418951 -27852493 - FLAM_A SINE Alu 0 133 2 282 56 0 0 chr9 114419371 114419407 -27852037 + (TG)n Simple_repeat Simple_repeat 2 37 0 405 247 89 27 chr9 114419414 114419560 -27851884 + Charlie8 DNA MER1_type 93 247 -2170 2894 201 98 37 chr9 114420441 114421349 -27850095 - L1MB7 LINE L1 0 6184 5225 5230 188 69 20 chr9 114421696 114423795 -27847649 - L1MB4 LINE L1 0 6416 4209 1158 179 17 30 chr9 114423808 114424042 -27847402 - L1MB4 LINE L1 -4739 1645 1415 2861 194 133 46 chr9 114424853 114425685 -27845759 - L1MB4 LINE L1 -5427 957 53 967 211 110 51 chr9 114425694 114426049 -27845395 - HAL1 LINE L1 -1337 1170 795 9215 169 87 51 chr9 114426064 114426429 -27845015 - Charlie5 DNA MER1_type 0 2624 2273 2001 147 20 0 chr9 114426429 114426735 -27844709 - AluSx SINE Alu 0 312 1 9215 169 87 51 chr9 114426735 114428794 -27842650 - Charlie5 DNA MER1_type -351 2273 114 232 331 81 0 chr9 114429076 114429200 -27842244 + MER119 DNA MER1_type 1 134 -449 * 364 226 41 89 chr9 114429188 114429334 -27842110 + MER119 DNA MER1_type 445 583 0 283 232 45 14 chr9 114429343 114429422 -27842022 - MLT1J2 LTR MaLR -306 181 73 623 144 21 0 chr9 114429509 114429606 -27841838 - Tigger7 DNA MER2_type 0 2487 2389 * 1320 180 76 4 chr9 114429603 114429853 -27841591 - Tigger7 DNA MER2_type -465 268 1 458 295 57 96 chr9 114429950 114430428 -27841016 - HAL1 LINE L1 -1777 730 272 2053 118 167 16 chr9 114430514 114430886 -27840558 - MSTA LTR MaLR 0 428 1 4808 130 47 19 chr9 114430886 114431654 -27839790 - MSTA-int LTR MaLR 0 1580 792 1224 133 232 23 chr9 114431655 114431918 -27839526 + MSTA LTR MaLR 45 362 -66 1523 171 24 27 chr9 114431918 114432211 -27839233 - MSTA-int LTR MaLR -813 767 476 1386 135 0 0 chr9 114432215 114432422 -27839022 + AluSg/x SINE Alu 91 297 -15 1843 108 56 0 chr9 114432477 114432763 -27838681 - AluSx SINE Alu -10 302 1 550 199 41 82 chr9 114432764 114432900 -27838544 - L1MC4 LINE L1 -641 7401 7272 2093 124 0 0 chr9 114432900 114433191 -27838253 + AluSg SINE Alu 1 291 -19 550 199 41 82 chr9 114433191 114433225 -27838219 - L1MC4 LINE L1 -770 7272 7238 831 218 35 5 chr9 114433228 114433430 -27838014 - L1MC4 LINE L1 -960 7082 6875 668 214 16 0 chr9 114433430 114433556 -27837888 + FLAM_A SINE Alu 1 128 -14 1540 232 102 10 chr9 114433559 114433952 -27837492 - L1MC4 LINE L1 -1156 6886 6458 384 104 26 13 chr9 114434618 114434695 -27836749 + (CA)n Simple_repeat Simple_repeat 1 78 0 1911 95 16 51 chr9 114435087 114435232 -27836212 + AluSx SINE Alu 1 150 -162 2237 65 21 0 chr9 114435232 114435523 -27835921 + AluY SINE Alu 1 297 -14 1911 95 16 51 chr9 114435523 114435693 -27835751 + AluSx SINE Alu 150 305 -7 1982 98 0 4 chr9 114435701 114435975 -27835469 + AluSg SINE Alu 7 279 -31 279 0 0 0 chr9 114435978 114436009 -27835435 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 396 0 0 0 chr9 114436008 114436052 -27835392 + (GA)n Simple_repeat Simple_repeat 2 45 0 466 121 0 0 chr9 114436052 114436118 -27835326 + AluSg/x SINE Alu 217 282 -28 243 0 0 0 chr9 114436118 114436145 -27835299 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 638 25 12 0 chr9 114436144 114436224 -27835220 + (GA)n Simple_repeat Simple_repeat 2 82 0 403 247 36 124 chr9 114436224 114436295 -27835149 - L1 LINE L1 -1609 4537 4461 1548 177 47 7 chr9 114436295 114436595 -27834849 - AluJo SINE Alu 0 312 1 403 247 36 124 chr9 114436595 114436717 -27834727 - L1 LINE L1 -1685 4461 4361 1980 98 47 0 chr9 114436907 114437206 -27834238 - AluSq SINE Alu 0 312 1 2168 111 0 0 chr9 114437310 114437607 -27833837 - AluSg SINE Alu -13 297 1 1766 106 11 33 chr9 114437612 114437887 -27833557 - L1PA10 LINE L1 0 6168 5900 2390 66 0 3 chr9 114438533 114438837 -27832607 - AluY SINE Alu -6 305 3 1943 131 0 0 chr9 114439311 114439639 -27831805 - AluJo SINE Alu 0 328 1 693 100 3 132 chr9 114439737 114439757 -27831687 + L1MC3 LINE L1 7660 7681 -346 2188 128 28 50 chr9 114439757 114439875 -27831569 + MLT1B LTR MaLR 1 120 -270 2246 85 0 0 chr9 114439875 114440168 -27831276 + AluSq SINE Alu 1 293 -20 2188 128 28 50 chr9 114440168 114440448 -27830996 + MLT1B LTR MaLR 120 390 0 693 100 3 132 chr9 114440448 114440557 -27830887 + L1MC3 LINE L1 7681 7802 -225 1676 156 20 27 chr9 114440557 114440858 -27830586 - AluJo SINE Alu -13 299 1 693 100 3 132 chr9 114440858 114440895 -27830549 + L1MC3 LINE L1 7802 8027 0 1776 134 33 0 chr9 114440963 114441265 -27830179 + AluSx SINE Alu 1 311 0 638 251 5 62 chr9 114441706 114441917 -27829527 - L2 LINE L2 0 3313 3115 1219 142 33 9 chr9 114441924 114442135 -27829309 + AluJb SINE Alu 87 302 -10 2122 105 3 0 chr9 114442227 114442513 -27828931 - AluSc SINE Alu -17 292 6 662 303 75 34 chr9 114442533 114442827 -27828617 - L2 LINE L2 -373 2941 2636 5295 46 6 3 chr9 114442836 114443863 -27827581 + MER11A LTR ERVK 1 1266 0 3024 244 121 17 chr9 114443864 114444529 -27826915 - L2 LINE L2 -693 2621 1820 1748 121 45 4 chr9 114444529 114444794 -27826650 + AluSg SINE Alu 1 276 -34 3024 244 121 17 chr9 114444794 114445109 -27826335 - L2 LINE L2 -1494 1820 1539 1595 192 90 72 chr9 114445424 114445527 -27825917 + MLT1D LTR MaLR 7 107 -398 2089 100 0 32 chr9 114445527 114445836 -27825608 + AluSg SINE Alu 6 304 -6 1595 192 90 72 chr9 114445836 114446164 -27825280 + MLT1D LTR MaLR 107 446 -59 2057 114 16 0 chr9 114446165 114446472 -27824972 + AluSx SINE Alu 1 312 0 1395 178 20 20 chr9 114446519 114446690 -27824754 - AluJo SINE Alu -20 292 119 243 0 0 0 chr9 114446690 114446717 -27824727 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1395 178 20 20 chr9 114446717 114446837 -27824607 - AluJo SINE Alu -192 120 1 489 125 0 0 chr9 114446838 114446910 -27824534 - MER5A DNA MER1_type -114 75 4 1917 134 14 0 chr9 114447350 114447642 -27823802 + AluY SINE Alu 5 300 -11 1289 100 0 11 chr9 114447642 114447822 -27823622 + AluJb SINE Alu 135 312 0 284 152 0 0 chr9 114447835 114447881 -27823563 + Alu SINE Alu 249 294 -8 21 0 0 0 chr9 114449349 114449370 -27822074 + AT_rich Low_complexity Low_complexity 1 21 0 1471 152 4 0 chr9 114449371 114449614 -27821830 - AluJb SINE Alu 0 312 69 2053 130 0 3 chr9 114450052 114450359 -27821085 + AluSx SINE Alu 1 306 -6 2243 210 29 0 chr9 114450502 114450988 -27820456 + L1M4 LINE L1 4700 5199 -947 1200 131 4 78 chr9 114450989 114451234 -27820210 + AluJb SINE Alu 85 311 -1 732 244 86 25 chr9 114451286 114451483 -27819961 - MER82 DNA MER2_type -1 652 444 296 318 98 25 chr9 114451552 114451695 -27819749 + MIR SINE MIR 50 196 -12 401 185 161 0 chr9 114451718 114451799 -27819645 - MER82 DNA MER2_type -559 94 1 2553 159 40 24 chr9 114451813 114451842 -27819602 + L1MB8 LINE L1 5254 5281 -897 2237 102 0 0 chr9 114451842 114452137 -27819307 + AluSx SINE Alu 1 295 -17 2553 159 40 24 chr9 114452137 114452596 -27818848 + L1MB8 LINE L1 5281 5829 -349 2044 138 0 0 chr9 114452596 114452901 -27818543 + AluJb SINE Alu 1 305 -7 2553 159 40 24 chr9 114452901 114452978 -27818466 + L1MB8 LINE L1 5829 5903 -275 821 151 70 38 chr9 114452984 114453170 -27818274 + L1MB8 LINE L1 5987 6178 0 3183 132 20 53 chr9 114453231 114453776 -27817668 - MER1A DNA MER1_type 0 527 1 1504 170 7 21 chr9 114454416 114454698 -27816746 - AluJb SINE Alu -1 311 34 679 120 0 0 chr9 114454698 114454790 -27816654 - AluJ/FLAM SINE Alu -219 93 2 592 339 65 41 chr9 114455090 114455507 -27815937 + L2 LINE L2 2131 2567 -747 2359 70 3 0 chr9 114455507 114455805 -27815639 + AluSp SINE Alu 1 299 -14 592 339 65 41 chr9 114455805 114455974 -27815470 + L2 LINE L2 2567 2731 -583 322 293 58 51 chr9 114456219 114456672 -27814772 + HAL1b LINE L1 181 455 -893 720 191 0 44 chr9 114456672 114456808 -27814636 - FLAM_A SINE Alu -3 130 1 322 293 58 51 chr9 114456808 114456840 -27814604 + HAL1b LINE L1 455 485 -863 480 287 140 52 chr9 114456928 114457329 -27814115 + L1MC/D LINE L1 1949 2384 -4012 300 295 178 32 chr9 114457420 114457701 -27813743 + L1MC/D LINE L1 3693 4014 -2201 278 270 32 0 chr9 114458402 114458465 -27812979 + L2 LINE L2 3190 3254 -59 2091 125 29 0 chr9 114460582 114460894 -27810550 - L1MA8 LINE L1 -248 6043 5723 215 276 204 80 chr9 114461492 114461816 -27809628 + L2 LINE L2 1551 1833 -1481 198 0 0 0 chr9 114461816 114461838 -27809606 + (TC)n Simple_repeat Simple_repeat 2 23 0 215 276 204 80 chr9 114461838 114461860 -27809584 + L2 LINE L2 1833 1851 -1463 1981 115 31 10 chr9 114461860 114462148 -27809296 - AluSq SINE Alu -19 294 1 215 276 204 80 chr9 114462148 114462290 -27809154 + L2 LINE L2 1851 2101 -1213 497 246 83 82 chr9 114462326 114462487 -27808957 - L1ME4a LINE L1 -10 6111 5952 2090 105 3 0 chr9 114462487 114462781 -27808663 - AluSc SINE Alu -12 297 3 497 246 83 82 chr9 114462781 114463044 -27808400 - L1ME4a LINE L1 -169 5952 5691 1546 139 31 76 chr9 114463044 114463230 -27808214 - AluJb SINE Alu -9 303 110 1794 78 27 105 chr9 114463230 114463562 -27807882 - AluYb8 SINE Alu -12 306 1 2092 106 3 3 chr9 114463564 114463857 -27807587 - AluSq SINE Alu -18 295 3 1546 139 31 76 chr9 114463857 114463984 -27807460 - AluJb SINE Alu -203 109 1 497 246 83 82 chr9 114463984 114464148 -27807296 - L1ME4a LINE L1 -430 5691 5508 267 288 117 6 chr9 114464217 114464380 -27807064 + L1MC/D LINE L1 4495 4675 -1540 799 155 0 0 chr9 114464465 114464581 -27806863 - FLAM_C SINE Alu -18 125 10 1993 120 10 3 chr9 114464676 114464967 -27806477 - AluSx SINE Alu -18 294 2 453 285 100 64 chr9 114465129 114465399 -27806045 + L1MC/D LINE L1 5323 5621 -2256 1961 143 0 0 chr9 114465399 114465692 -27805752 - AluSx SINE Alu -19 293 1 453 285 100 64 chr9 114465692 114465919 -27805525 + L1MC/D LINE L1 5621 5838 -2039 2183 99 3 19 chr9 114466043 114466357 -27805087 + AluSp SINE Alu 1 309 -4 2295 89 7 0 chr9 114466393 114466695 -27804749 - AluSx SINE Alu 0 312 9 7268 50 28 1 chr9 114466817 114467691 -27803753 + MER11D LTR ERVK 1 897 0 279 0 0 0 chr9 114468020 114468051 -27803393 + (A)n Simple_repeat Simple_repeat 1 31 0 1064 157 0 83 chr9 114468705 114468935 -27802509 - AluSg/x SINE Alu -15 295 85 209 87 0 87 chr9 114468938 114468984 -27802460 + (T)n Simple_repeat Simple_repeat 1 42 0 1083 173 10 0 chr9 114469349 114469546 -27801898 + L1PA16 LINE L1 5966 6164 -2 2232 76 7 7 chr9 114469580 114469883 -27801561 - AluY SINE Alu -8 303 1 2169 112 0 0 chr9 114469885 114470188 -27801256 - AluSx SINE Alu -9 303 1 183 80 0 0 chr9 114470301 114470326 -27801118 + (TAA)n Simple_repeat Simple_repeat 1 25 0 2244 100 0 0 chr9 114470665 114470966 -27800478 - AluY SINE Alu -10 301 1 1147 232 148 61 chr9 114471186 114471366 -27800078 + MLT1H LTR MaLR 1 164 -385 2064 115 3 16 chr9 114471366 114471502 -27799942 + AluSx SINE Alu 1 137 -175 2127 87 0 36 chr9 114471502 114471811 -27799633 + AluSx SINE Alu 1 298 -14 2064 115 3 16 chr9 114471811 114471988 -27799456 + AluSx SINE Alu 137 310 -2 1147 232 148 61 chr9 114471988 114472312 -27799132 + MLT1H LTR MaLR 164 549 0 656 269 7 0 chr9 114472594 114472743 -27798701 - MIR SINE MIR -6 256 107 21 36 0 0 chr9 114473028 114473056 -27798388 + AT_rich Low_complexity Low_complexity 1 28 0 483 141 263 10 chr9 114473062 114473161 -27798283 - FLAM_C SINE Alu -18 125 2 2234 76 0 29 chr9 114473513 114473828 -27797616 - AluSx SINE Alu -6 306 1 1024 166 81 25 chr9 114473829 114474064 -27797380 - L1MA7 LINE L1 -121 6170 5923 261 133 0 0 chr9 114474858 114474903 -27796541 + MER4-int LTR ERV1 1116 1160 -5438 552 262 27 27 chr9 114475449 114475598 -27795846 + MIR SINE MIR 42 190 -72 31 0 0 0 chr9 114475600 114475631 -27795813 + AT_rich Low_complexity Low_complexity 1 31 0 812 125 37 7 chr9 114475633 114475769 -27795675 - FRAM SINE Alu -37 139 1 470 248 0 0 chr9 114475775 114475880 -27795564 - MLT1B LTR MaLR -219 171 67 * 834 160 7 7 chr9 114475879 114476023 -27795421 - MLT1B LTR MaLR -246 144 1 569 216 0 0 chr9 114476267 114476369 -27795075 + AluJo/FLAM SINE Alu 2 103 -209 562 208 0 0 chr9 114476364 114476470 -27794974 + AluSg/x SINE Alu 193 298 -12 * 1999 120 0 0 chr9 114477238 114477545 -27793899 + AluSx SINE Alu 1 307 0 3339 144 20 51 chr9 114477805 114478386 -27793058 - LTR26 LTR ERV1 -9 594 31 2103 111 0 0 chr9 114478386 114478674 -27792770 - AluSx SINE Alu -24 288 1 3339 144 20 51 chr9 114478674 114478705 -27792739 - LTR26 LTR ERV1 -572 31 1 399 318 29 20 chr9 114478705 114478870 -27792574 - MIR SINE MIR -78 130 1 1330 158 11 62 chr9 114478901 114479174 -27792270 - LTR3 LTR ERVK 0 432 174 722 139 31 16 chr9 114479174 114479303 -27792141 - MER11A LTR ERVK 0 1266 1136 * 1081 123 18 0 chr9 114479275 114479438 -27792006 - LTR3 LTR ERVK -262 170 5 2210 224 68 89 chr9 114479686 114480076 -27791368 + L1MC4 LINE L1 6832 7228 -814 1912 154 0 16 chr9 114480076 114480387 -27791057 + AluSx SINE Alu 1 306 -6 2210 224 68 89 chr9 114480387 114480931 -27790513 + L1MC4 LINE L1 7228 7747 -295 507 155 119 0 chr9 114480931 114481015 -27790429 + MER58 DNA MER1_type 1 94 -247 2162 95 0 54 chr9 114481026 114481343 -27790101 + AluY SINE Alu 1 300 -11 386 229 12 0 chr9 114481349 114481432 -27790012 - MER34 LTR ERV1 -432 110 27 581 159 9 0 chr9 114481444 114481557 -27789887 + L1MA8 LINE L1 6176 6289 -2 1550 207 6 13 chr9 114481725 114482039 -27789405 + AluJo SINE Alu 1 312 0 2147 140 0 0 chr9 114482077 114482384 -27789060 - AluSq SINE Alu -6 307 1 1988 100 8 0 chr9 114482480 114482741 -27788703 - AluSx SINE Alu -2 310 48 2437 88 0 0 chr9 114482979 114483274 -27788170 - AluSg SINE Alu -15 295 1 1750 178 0 16 chr9 114483553 114483856 -27787588 - AluJb SINE Alu -14 298 1 724 166 23 7 chr9 114484604 114484747 -27786697 - MLT1A1 LTR MaLR -216 158 1 1463 182 43 40 chr9 114485598 114485900 -27785544 + AluJb SINE Alu 1 303 -9 640 315 92 16 chr9 114485901 114486282 -27785162 + L2 LINE L2 1024 1433 -1881 1049 126 0 0 chr9 114486336 114486592 -27784852 - AluSg/x SINE Alu 0 392 137 337 250 61 61 chr9 114486769 114486866 -27784578 + L2 LINE L2 2208 2307 -1007 1592 102 0 31 chr9 114486866 114487091 -27784353 + AluJb SINE Alu 85 302 -10 337 250 61 61 chr9 114487091 114487173 -27784271 + L2 LINE L2 2306 2387 -927 346 337 137 47 chr9 114487256 114487546 -27783898 + MLT1J LTR MaLR 114 445 -66 2396 89 0 0 chr9 114487546 114487850 -27783594 - AluY SINE Alu -7 304 1 346 337 137 47 chr9 114487850 114487924 -27783520 + MLT1J LTR MaLR 445 511 0 637 244 125 29 chr9 114487924 114488235 -27783209 + L2 LINE L2 2370 2710 -604 1187 187 0 14 chr9 114488973 114489182 -27782262 + AluJo SINE Alu 82 287 -25 240 35 0 0 chr9 114489194 114489223 -27782221 + (TA)n Simple_repeat Simple_repeat 1 29 0 2013 147 0 3 chr9 114489223 114489516 -27781928 - AluSx SINE Alu -20 292 1 2362 96 0 3 chr9 114489533 114489836 -27781608 - AluY SINE Alu -9 302 1 22 0 0 0 chr9 114489836 114489858 -27781586 + AT_rich Low_complexity Low_complexity 1 22 0 1766 217 105 40 chr9 114490185 114490711 -27780733 - MER68 LTR ERV1 -2 560 1 11205 44 4 45 chr9 114491861 114493326 -27778118 - SVA Other Other 0 1386 1 2503 75 0 0 chr9 114493693 114493988 -27777456 + AluSc SINE Alu 1 295 -14 234 0 0 0 chr9 114494165 114494191 -27777253 + (CA)n Simple_repeat Simple_repeat 1 26 0 1478 155 9 9 chr9 114494200 114494432 -27777012 - AluJb SINE Alu -26 286 55 2624 74 0 0 chr9 114494664 114494976 -27776468 - AluSx SINE Alu 0 312 1 339 260 115 0 chr9 114495047 114495151 -27776293 - L1ME LINE L1 -404 5717 5602 189 0 0 0 chr9 114495465 114495486 -27775958 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2193 98 0 0 chr9 114495491 114495767 -27775677 - AluSx SINE Alu -36 276 1 31 44 0 0 chr9 114495788 114495833 -27775611 + AT_rich Low_complexity Low_complexity 1 45 0 2228 118 0 3 chr9 114495952 114496256 -27775188 - AluSx SINE Alu -9 303 1 1498 176 0 8 chr9 114496629 114496873 -27774571 + AluJb SINE Alu 56 297 -15 878 122 0 36 chr9 114497575 114497714 -27773730 - AluJo SINE Alu -178 134 1 2791 77 3 36 chr9 114498046 114498434 -27773010 - THE1C LTR MaLR 0 375 1 877 145 0 0 chr9 114498862 114498986 -27772458 + AluJo/FLAM SINE Alu 1 124 -188 1998 140 0 0 chr9 114498989 114499267 -27772177 - AluJb SINE Alu -15 297 20 283 221 176 0 chr9 114499851 114499919 -27771525 - L2 LINE L2 -7 3306 3227 615 305 77 18 chr9 114499920 114500568 -27770876 - L1M4 LINE L1 -1779 4367 3626 835 172 31 0 chr9 114501085 114501248 -27770196 + L1MB4 LINE L1 6013 6180 0 2281 98 3 10 chr9 114501270 114501576 -27769868 + AluSq SINE Alu 1 304 -9 314 184 0 46 chr9 114501667 114501754 -27769690 - L1MB3 LINE L1 -2 6181 6099 2051 181 46 28 chr9 114501904 114502207 -27769237 - MLT1C LTR MaLR 0 467 152 2090 115 14 0 chr9 114502207 114502502 -27768942 + AluSx SINE Alu 1 299 -13 2051 181 46 28 chr9 114502502 114502657 -27768787 - MLT1C LTR MaLR -315 152 1 487 219 89 77 chr9 114502732 114502901 -27768543 - LTR41 LTR ERVL -602 171 1 346 98 0 0 chr9 114502970 114503021 -27768423 - L1MB1 LINE L1 -1 6167 6117 1899 121 0 0 chr9 114503065 114503322 -27768122 - AluSx SINE Alu -27 285 29 897 226 11 0 chr9 114503326 114503503 -27767941 - AluJo SINE Alu -26 286 108 248 35 0 0 chr9 114503503 114503532 -27767912 + AluY SINE Alu 8 36 -265 325 354 115 37 chr9 114503844 114504116 -27767328 + L2 LINE L2 2326 2575 -739 2249 92 0 3 chr9 114504116 114504400 -27767044 - AluSx SINE Alu -9 303 21 325 354 115 37 chr9 114504400 114504667 -27766777 + L2 LINE L2 2575 2907 -407 182 161 0 54 chr9 114504902 114504958 -27766486 + (TA)n Simple_repeat Simple_repeat 2 54 0 591 264 7 19 chr9 114505338 114505493 -27765951 + L2 LINE L2 3159 3311 -2 402 87 116 14 chr9 114505537 114505585 -27765859 - MER53 DNA DNA -79 110 56 363 143 81 2 chr9 114505585 114505669 -27765775 + Alu SINE Alu 1 46 -262 900 172 6 6 chr9 114505713 114505870 -27765574 + MER20 DNA MER1_type 58 214 -5 286 328 75 0 chr9 114507277 114507411 -27764033 + MIR SINE MIR 48 191 -71 231 143 0 0 chr9 114510291 114510326 -27761118 + L2 LINE L2 3201 3235 -37 30 18 0 54 chr9 114511497 114511527 -27759917 + AT_rich Low_complexity Low_complexity 1 28 -25 686 190 8 0 chr9 114511527 114511648 -27759796 - FLAM_A SINE Alu -8 125 4 30 18 0 54 chr9 114511648 114511673 -27759771 + AT_rich Low_complexity Low_complexity 28 53 0 404 304 58 47 chr9 114511720 114511911 -27759533 + MER117 DNA MER1_type 5 197 0 261 381 57 5 chr9 114512245 114512455 -27758989 - L2 LINE L2 -441 2873 2653 762 209 101 49 chr9 114513156 114513482 -27757962 - LTR37A LTR ERV1 0 426 84 190 156 0 0 chr9 114514033 114514065 -27757379 + L2 LINE L2 2934 2965 -348 252 59 0 0 chr9 114514719 114514753 -27756691 + (TG)n Simple_repeat Simple_repeat 1 34 0 5871 79 33 71 chr9 114514937 114516658 -27754786 + SVA Other Other 1 868 -592 6849 67 2 38 chr9 114516671 114517693 -27753751 + SVA Other Other 433 1386 0 201 273 0 0 chr9 114518338 114518382 -27753062 - L2 LINE L2 -27 3286 3243 21 0 0 0 chr9 114518764 114518785 -27752659 + AT_rich Low_complexity Low_complexity 1 21 0 2282 114 0 0 chr9 114520289 114520588 -27750856 - AluSx SINE Alu -13 299 1 1281 179 106 40 chr9 114520831 114521105 -27750339 - AluJo SINE Alu -19 293 2 22 80 0 0 chr9 114521155 114521205 -27750239 + AT_rich Low_complexity Low_complexity 1 50 0 261 265 137 10 chr9 114521530 114521632 -27749812 - MIR SINE MIR -71 191 77 251 304 122 20 chr9 114522515 114522663 -27748781 + L2 LINE L2 2639 2801 -513 348 319 25 0 chr9 114522664 114522783 -27748661 - MER20B DNA MER1_type -661 122 1 2365 83 3 3 chr9 114522809 114523110 -27748334 - AluSc SINE Alu -8 301 1 1954 154 0 26 chr9 114523298 114523603 -27747841 - AluJb SINE Alu -15 297 1 23 33 0 0 chr9 114524130 114524160 -27747284 + AT_rich Low_complexity Low_complexity 1 30 0 740 199 0 27 chr9 114525682 114525828 -27745616 - FLAM_C SINE Alu 0 143 2 2223 116 17 7 chr9 114526018 114526319 -27745125 + AluSx SINE Alu 1 304 -8 1578 119 165 11 chr9 114526638 114526898 -27744546 + AluJo SINE Alu 1 300 -2 2122 108 10 26 chr9 114527261 114527567 -27743877 + AluSx SINE Alu 1 301 -11 2268 85 0 26 chr9 114527574 114527880 -27743564 - AluSq SINE Alu -15 298 1 243 0 0 0 chr9 114527949 114527976 -27743468 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr9 114529425 114529453 -27741991 + AT_rich Low_complexity Low_complexity 1 28 0 262 306 0 48 chr9 114529564 114529688 -27741756 + MIR3 SINE MIR 88 205 -3 2267 104 7 3 chr9 114530828 114531137 -27740307 - AluSx SINE Alu -2 310 1 2298 80 0 3 chr9 114531148 114531436 -27740008 - AluSc SINE Alu -22 287 1 21 0 0 0 chr9 114531691 114531712 -27739732 + AT_rich Low_complexity Low_complexity 1 21 0 1391 160 59 45 chr9 114531876 114532164 -27739280 - AluJo SINE Alu -20 292 1 223 220 326 8 chr9 114532374 114532506 -27738938 + MIR SINE MIR 86 259 -3 1878 106 16 80 chr9 114533562 114533874 -27737570 - AluSx SINE Alu -20 292 1 323 221 118 52 chr9 114533901 114534037 -27737407 + MIR3 SINE MIR 54 198 -10 633 296 51 54 chr9 114535213 114535585 -27735859 + MLT1K LTR MaLR 155 525 -63 2170 101 0 0 chr9 114535732 114536019 -27735425 + AluJb SINE Alu 21 307 -5 430 277 124 100 chr9 114536374 114537080 -27734364 - L1M2 LINE L1 -5508 1341 403 229 263 103 6 chr9 114537103 114537259 -27734185 - L2 LINE L2 -802 2512 2342 2225 95 3 48 chr9 114538852 114539168 -27732276 - AluSq SINE Alu -11 302 1 193 283 0 12 chr9 114539180 114539249 -27732195 - MIR SINE MIR -74 134 84 1237 218 81 79 chr9 114540342 114540754 -27730690 - MLT1H LTR MaLR 0 549 93 2205 92 0 35 chr9 114540754 114541068 -27730376 - AluSg SINE Alu -7 303 1 1237 218 81 79 chr9 114541068 114541162 -27730282 - MLT1H LTR MaLR -456 93 1 933 239 44 4 chr9 114541168 114541394 -27730050 - MIR SINE MIR -26 236 2 2364 104 7 0 chr9 114542255 114542563 -27728881 - AluSx SINE Alu -2 310 1 1847 92 0 59 chr9 114542917 114543188 -27728256 - AluSg SINE Alu -39 271 17 315 122 0 0 chr9 114543459 114543508 -27727936 + (TCCCC)n Simple_repeat Simple_repeat 3 51 0 2012 134 0 0 chr9 114543534 114543818 -27727626 - AluSx SINE Alu -28 284 1 2321 81 3 7 chr9 114543894 114544192 -27727252 - AluSp SINE Alu -16 297 1 2004 156 3 0 chr9 114545744 114546051 -27725393 - AluJb SINE Alu -4 308 1 205 191 21 21 chr9 114546124 114546171 -27725273 + L2 LINE L2 1693 1739 -1575 520 289 68 47 chr9 114546359 114546399 -27725045 + L1MC/D LINE L1 3908 3946 -2200 2194 108 3 7 chr9 114546399 114546695 -27724749 + AluSc SINE Alu 1 295 -14 520 289 68 47 chr9 114546695 114547170 -27724274 + L1MC/D LINE L1 3946 4434 -1712 1914 156 3 13 chr9 114547264 114547566 -27723878 + AluJb SINE Alu 1 299 -13 396 0 0 0 chr9 114547627 114547671 -27723773 + (TG)n Simple_repeat Simple_repeat 2 45 0 238 63 0 206 chr9 114547715 114547778 -27723666 + Alu SINE Alu 85 118 -184 883 126 0 0 chr9 114547823 114547942 -27723502 + AluSg/x SINE Alu 134 252 -58 339 273 172 30 chr9 114547977 114548175 -27723269 + L1MC/D LINE L1 5254 5479 -2329 279 209 83 0 chr9 114548231 114548297 -27723147 + MIR SINE MIR 66 139 -69 476 319 59 22 chr9 114548317 114548471 -27722973 - MIR SINE MIR -43 165 6 275 321 42 0 chr9 114548474 114548579 -27722865 + L1MC/D LINE L1 5490 5598 -523 528 184 40 32 chr9 114549417 114549542 -27721902 + MLT1J2 LTR MaLR 7 132 -318 532 253 118 18 chr9 114549547 114549768 -27721676 + MLT1J1 LTR MaLR 204 446 0 877 159 7 187 chr9 114549799 114549996 -27721448 + MER8 DNA MER2_type 1 131 -108 2308 96 6 6 chr9 114549996 114550308 -27721136 - AluSq SINE Alu -1 312 1 877 159 7 187 chr9 114550308 114550399 -27721045 + MER8 DNA MER2_type 131 237 -2 2128 140 0 0 chr9 114550879 114551171 -27720273 - AluSx SINE Alu -20 292 1 1465 152 53 0 chr9 114552235 114552498 -27718946 + Tigger3(Golem) DNA MER2_type 2751 3027 -2 280 291 116 23 chr9 114552504 114552676 -27718768 - L2 LINE L2 -1254 2060 1873 750 190 34 117 chr9 114552705 114553088 -27718356 - Charlie2 DNA MER1_type -2 2860 2510 775 185 28 28 chr9 114553088 114553266 -27718178 + LTR41 LTR ERVL 1 178 -595 319 179 43 0 chr9 114553915 114553993 -27717451 + LTR41 LTR ERVL 705 795 0 630 147 151 17 chr9 114553994 114554226 -27717218 - Charlie2 DNA MER1_type -349 2513 2251 4828 149 104 118 chr9 114554235 114554549 -27716895 + L1MC3 LINE L1 6247 6564 -1221 2251 107 0 3 chr9 114554549 114554858 -27716586 - AluSc SINE Alu -1 308 1 4828 149 104 118 chr9 114554858 114555248 -27716196 + L1MC3 LINE L1 6564 6958 -827 2183 139 0 0 chr9 114555248 114555557 -27715887 - AluSx SINE Alu -3 309 1 4828 149 104 118 chr9 114555557 114555594 -27715850 + L1MC3 LINE L1 6958 6994 -791 1938 176 36 25 chr9 114555594 114555986 -27715458 - MSTD LTR MaLR 0 396 1 4828 149 104 118 chr9 114555986 114556025 -27715419 + L1MC3 LINE L1 6994 7032 -753 195 100 0 0 chr9 114556025 114556055 -27715389 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4828 149 104 118 chr9 114556055 114556108 -27715336 + L1MC3 LINE L1 7032 7084 -701 406 253 0 0 chr9 114556108 114556199 -27715245 + MLT1F1 LTR MaLR 35 125 -442 4828 149 104 118 chr9 114556199 114556825 -27714619 + L1MC3 LINE L1 7084 7778 -7 2418 99 0 3 chr9 114556832 114557144 -27714300 + AluSx SINE Alu 1 311 -1 245 106 43 0 chr9 114557157 114557204 -27714240 - Charlie2 DNA MER1_type -583 2279 2231 923 286 20 29 chr9 114557217 114557560 -27713884 - Charlie2 DNA MER1_type -2522 340 1 183 299 90 0 chr9 114557570 114557637 -27713807 - L2 LINE L2 -1529 1785 1713 778 230 91 78 chr9 114557844 114557943 -27713501 + L2 LINE L2 1028 1124 -2190 2470 44 0 3 chr9 114557943 114558240 -27713204 - AluY SINE Alu -12 299 4 778 230 91 78 chr9 114558240 114558514 -27712930 + L2 LINE L2 1124 1406 -1908 647 249 50 27 chr9 114558526 114558747 -27712697 + MLT2F LTR ERVL 424 649 -14 3418 256 80 12 chr9 114558770 114559771 -27711673 + L2 LINE L2 1405 2473 -841 286 233 133 0 chr9 114559883 114559973 -27711471 + L1MC/D LINE L1 5720 5821 -1987 571 299 96 12 chr9 114560873 114561381 -27710063 - L1MC/D LINE L1 -758 5388 5213 2413 89 0 6 chr9 114561967 114562281 -27709163 - AluSq SINE Alu -1 312 1 270 294 22 11 chr9 114562472 114562564 -27708880 + MIR3 SINE MIR 90 182 -26 216 158 0 0 chr9 114562774 114562812 -27708632 + T-rich Low_complexity Low_complexity 1 38 0 639 200 32 0 chr9 114563118 114563243 -27708201 + MER63 DNA MER1_type 1 755 -81 26 64 0 0 chr9 114563717 114563764 -27707680 + AT_rich Low_complexity Low_complexity 1 47 0 1263 172 0 0 chr9 114564141 114564333 -27707111 + AluJo SINE Alu 5 196 -116 189 0 0 0 chr9 114564363 114564384 -27707060 + (TAA)n Simple_repeat Simple_repeat 2 22 0 33 0 0 0 chr9 114564630 114564663 -27706781 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr9 114564793 114564832 -27706612 + AT_rich Low_complexity Low_complexity 1 39 0 374 301 135 0 chr9 114565014 114565170 -27706274 + L1M4 LINE L1 3607 3783 -2363 1853 155 7 7 chr9 114565175 114565471 -27705973 + AluJb SINE Alu 1 296 -16 369 337 36 24 chr9 114565492 114565744 -27705700 + L1M4 LINE L1 3743 3997 -2149 286 233 101 27 chr9 114565772 114565919 -27705525 - MER69 DNA AcHobo -1 2525 28 393 233 42 33 chr9 114566125 114566245 -27705199 + MIR SINE MIR 137 257 -5 233 133 44 0 chr9 114567753 114567798 -27703646 - L1MC1 LINE L1 -1 6332 6286 2089 132 0 0 chr9 114568069 114568356 -27703088 + AluSx SINE Alu 13 299 -13 1612 126 0 71 chr9 114568358 114568613 -27702831 + AluSx SINE Alu 23 259 -53 37 23 0 0 chr9 114568613 114568657 -27702787 + AT_rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr9 114569983 114570016 -27701428 + AT_rich Low_complexity Low_complexity 1 33 0 205 250 0 0 chr9 114570130 114570174 -27701270 + CT-rich Low_complexity Low_complexity 3 46 0 3452 100 26 0 chr9 114570528 114571029 -27700415 - MER75 DNA T2_type 0 514 1 395 327 99 82 chr9 114572002 114572225 -27699219 - L2 LINE L2 -5 3302 3084 7272 48 0 1 chr9 114572225 114573664 -27697780 - L1PA5 LINE L1 0 6154 4716 395 327 99 82 chr9 114573664 114574616 -27696828 - L2 LINE L2 -223 3084 2073 518 325 25 20 chr9 114575341 114575544 -27695900 + MLT1K LTR MaLR 125 328 -260 446 272 74 12 chr9 114575593 114575755 -27695689 - MLT1K LTR MaLR -54 534 363 2158 172 39 35 chr9 114575765 114576200 -27695244 + MER68 LTR ERV1 125 561 -1 1870 167 0 0 chr9 114577861 114578143 -27693301 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr9 114578146 114578167 -27693277 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 827 183 49 0 chr9 114579435 114579577 -27691867 - FRAM SINE Alu -24 152 4 339 310 204 51 chr9 114579904 114580120 -27691324 + L1ME LINE L1 5329 5577 -544 243 0 0 0 chr9 114580204 114580231 -27691213 + (CA)n Simple_repeat Simple_repeat 2 28 0 292 294 55 18 chr9 114581406 114581515 -27689929 - MIR SINE MIR -63 145 33 309 277 107 34 chr9 114582432 114582609 -27688835 + L1MEc LINE L1 1615 1804 -4592 32 43 0 0 chr9 114583175 114583221 -27688223 + AT_rich Low_complexity Low_complexity 1 46 0 2142 121 3 0 chr9 114583226 114583531 -27687913 - AluSx SINE Alu -2 310 5 21 89 0 0 chr9 114583773 114583829 -27687615 + AT_rich Low_complexity Low_complexity 1 56 0 2095 111 20 3 chr9 114584092 114584398 -27687046 + AluSq SINE Alu 1 311 -2 1389 89 35 0 chr9 114584746 114584949 -27686495 + L1MA1 LINE L1 6093 6302 0 464 350 53 76 chr9 114585527 114585921 -27685523 - L2 LINE L2 0 3272 2888 226 322 167 19 chr9 114585958 114586228 -27685216 - L2 LINE L2 -1545 1769 1460 2522 146 29 0 chr9 114586243 114586628 -27684816 + MER61B LTR ERV1 1 396 -29 731 334 205 29 chr9 114586746 114587741 -27683703 - L2 LINE L2 -1997 1317 148 405 259 79 22 chr9 114587716 114587855 -27683589 + MIR SINE MIR 29 175 -87 * 304 159 0 58 chr9 114587995 114588064 -27683380 + L1MB7 LINE L1 6108 6172 -12 1251 152 14 23 chr9 114589050 114589267 -27682177 - AluJo SINE Alu -14 298 84 279 322 93 8 chr9 114590150 114590268 -27681176 - MER5A DNA MER1_type -26 163 36 200 341 0 37 chr9 114590271 114590353 -27681091 + L2 LINE L2 3193 3271 -1 22 0 0 0 chr9 114590376 114590398 -27681046 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 114590427 114590455 -27680989 + AT_rich Low_complexity Low_complexity 1 28 0 192 368 144 23 chr9 114590585 114590759 -27680685 + L2 LINE L2 2778 2972 -342 2348 97 0 0 chr9 114591415 114591724 -27679720 - AluSq SINE Alu -4 309 1 1951 127 7 7 chr9 114592345 114592645 -27678799 + AluSq SINE Alu 1 300 -13 739 216 100 48 chr9 114593395 114593626 -27677818 - MIR SINE MIR 0 262 20 481 335 33 44 chr9 114594977 114595252 -27676192 + L1MDa LINE L1 27 298 -6242 4391 258 63 28 chr9 114595256 114596363 -27675081 - L1MEc LINE L1 -4779 1617 440 2292 113 0 0 chr9 114596363 114596673 -27674771 - AluSx SINE Alu -2 310 1 4391 258 63 28 chr9 114596673 114597094 -27674350 - L1MEc LINE L1 -5956 440 35 21 0 0 0 chr9 114597829 114597850 -27673594 + AT_rich Low_complexity Low_complexity 1 21 0 1951 81 77 0 chr9 114597852 114598113 -27673331 - AluSc SINE Alu -28 281 1 228 167 62 0 chr9 114599178 114599226 -27672218 + MIR SINE MIR 116 166 -96 1577 147 32 67 chr9 114599369 114599683 -27671761 - AluJo SINE Alu -9 303 1 329 375 111 7 chr9 114599826 114599970 -27671474 + L2 LINE L2 3102 3260 -12 26 0 0 0 chr9 114600246 114600272 -27671172 + AT_rich Low_complexity Low_complexity 1 26 0 330 157 0 0 chr9 114600354 114600405 -27671039 - AluJo SINE Alu -18 284 234 24 53 0 0 chr9 114600794 114600832 -27670612 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr9 114601079 114601105 -27670339 + AT_rich Low_complexity Low_complexity 1 26 0 1230 184 60 0 chr9 114601353 114601571 -27669873 - AluJo SINE Alu -81 231 1 21 0 0 0 chr9 114602257 114602278 -27669166 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 114603212 114603233 -27668211 + AT_rich Low_complexity Low_complexity 1 21 0 631 145 79 13 chr9 114603383 114603535 -27667909 + L1ME1 LINE L1 5204 5365 -781 1711 141 66 3 chr9 114603535 114603854 -27667590 + L1MB8 LINE L1 5835 6173 -5 14834 114 20 16 chr9 114603854 114604117 -27667327 - Tigger1 DNA MER2_type 0 2418 2158 1646 161 50 20 chr9 114604117 114604415 -27667029 - AluJo SINE Alu -5 307 1 14834 114 20 16 chr9 114604415 114604621 -27666823 - Tigger1 DNA MER2_type -260 2158 1954 2168 89 14 3 chr9 114604621 114604912 -27666532 + AluSc SINE Alu 1 294 -15 14834 114 20 16 chr9 114604912 114606732 -27664712 - Tigger1 DNA MER2_type -464 1954 119 635 206 8 8 chr9 114606875 114607001 -27664443 - Tigger1 DNA MER2_type -2292 126 1 1376 192 74 10 chr9 114607005 114607302 -27664142 + L1ME1 LINE L1 5347 5662 -502 496 174 0 0 chr9 114607310 114607396 -27664048 + AluJ/FLAM SINE Alu 1 86 -226 33 0 0 0 chr9 114607403 114607436 -27664008 + AT_rich Low_complexity Low_complexity 1 33 0 1730 187 56 73 chr9 114607437 114607918 -27663526 + L1ME1 LINE L1 5650 6122 -44 346 298 115 26 chr9 114607920 114608111 -27663333 + MER77 LTR ERV1 326 533 -72 815 289 76 8 chr9 114608301 114608594 -27662850 - Charlie8 DNA MER1_type -67 274 77 2095 105 35 0 chr9 114608594 114608880 -27662564 + AluSx SINE Alu 1 296 -16 815 289 76 8 chr9 114608880 114608946 -27662498 - Charlie8 DNA MER1_type -264 77 17 291 139 0 0 chr9 114609154 114609197 -27662247 + Tigger1 DNA MER2_type 55 97 -2321 2466 96 43 5 chr9 114609939 114610314 -27661130 - L1PA16 LINE L1 -9 6157 5769 5681 56 6 3 chr9 114610314 114611022 -27660422 - L1PA7 LINE L1 -2 6152 5435 751 97 10 0 chr9 114611022 114611125 -27660319 - L1PA16 LINE L1 -382 5784 5681 4382 174 19 3 chr9 114611129 114612347 -27659097 + L1PA16 LINE L1 4439 5671 -495 2123 109 23 0 chr9 114612500 114612804 -27658640 + AluSx SINE Alu 1 311 -1 256 307 202 0 chr9 114613165 114613279 -27658165 - MIR3 SINE MIR -13 195 59 267 208 14 69 chr9 114614325 114614397 -27657047 - MIR SINE MIR -39 223 156 664 216 7 0 chr9 114614400 114614548 -27656896 - L1MA10 LINE L1 -3 6331 6183 681 213 58 19 chr9 114614552 114614759 -27656685 - L1ME1 LINE L1 -141 6025 5811 352 161 16 0 chr9 114614767 114614829 -27656615 - L1MD1 LINE L1 -24 6218 6156 469 342 88 59 chr9 114614844 114615505 -27655939 - L1MEd LINE L1 -5296 823 144 2078 113 10 0 chr9 114615695 114615987 -27655457 - AluSx SINE Alu -17 295 1 895 140 0 30 chr9 114615988 114616175 -27655269 - AluSc SINE Alu 0 309 129 27 0 0 0 chr9 114616250 114616277 -27655167 + AT_rich Low_complexity Low_complexity 1 27 0 2082 102 7 0 chr9 114616744 114617047 -27654397 - AluSx SINE Alu 0 305 1 23 33 0 0 chr9 114617048 114617078 -27654366 + AT_rich Low_complexity Low_complexity 1 30 0 2952 167 20 24 chr9 114618393 114618945 -27652499 + MER44D DNA MER2_type 1 605 0 439 216 222 33 chr9 114620368 114620521 -27650923 - MIR SINE MIR -68 194 13 2136 139 65 5 chr9 114620521 114620889 -27650555 + MLT1B LTR MaLR 1 390 0 25 51 0 0 chr9 114620993 114621032 -27650412 + AT_rich Low_complexity Low_complexity 1 39 0 1731 187 20 0 chr9 114621508 114621807 -27649637 + AluJo SINE Alu 1 305 -7 258 286 36 0 chr9 114621993 114622077 -27649367 - MIR SINE MIR -2 260 174 22 0 0 0 chr9 114622127 114622149 -27649295 + AT_rich Low_complexity Low_complexity 1 22 0 338 103 35 0 chr9 114622700 114622758 -27648686 - Alu SINE Alu -4 296 237 249 180 0 0 chr9 114622858 114622908 -27648536 + CT-rich Low_complexity Low_complexity 3 52 0 207 182 0 0 chr9 114622956 114622989 -27648455 + polypyrimidine Low_complexity Low_complexity 2 34 0 321 159 0 0 chr9 114623033 114623096 -27648348 + CT-rich Low_complexity Low_complexity 1 63 0 6607 90 8 17 chr9 114623588 114624390 -27647054 - L1PA11 LINE L1 -21 6153 5367 2133 124 0 13 chr9 114624390 114624696 -27646748 - AluSx SINE Alu -10 302 1 6607 90 8 17 chr9 114624696 114625412 -27646032 - L1PA11 LINE L1 -807 5367 4646 817 81 0 0 chr9 114625410 114625521 -27645923 - L1PA11 LINE L1 -1789 4357 4247 * 2774 219 63 74 chr9 114626005 114626992 -27644452 + L1ME LINE L1 31 1005 -5078 929 128 0 0 chr9 114626992 114627125 -27644319 + FLAM_C SINE Alu 1 133 0 2774 219 63 74 chr9 114627125 114627166 -27644278 + L1ME LINE L1 1005 1045 -5038 995 226 164 15 chr9 114627213 114627615 -27643829 + L1M4 LINE L1 3479 3940 -2206 * 1518 155 0 12 chr9 114627608 114627860 -27643584 + L1MB7 LINE L1 3729 3977 -2169 * 2033 146 35 8 chr9 114627858 114628227 -27643217 + L1MA9 LINE L1 5899 6277 -35 3690 156 35 0 chr9 114628314 114628968 -27642476 + L1MB7 LINE L1 5280 5956 -228 2200 99 3 0 chr9 114629902 114630210 -27641234 + AluSp SINE Alu 1 309 0 2400 58 17 0 chr9 114631168 114631463 -27639981 - AluY SINE Alu -11 300 1 190 358 154 12 chr9 114631672 114631834 -27639610 + L2 LINE L2 2113 2297 -1017 532 254 78 7 chr9 114631848 114631990 -27639454 + MER5B DNA MER1_type 26 177 -1 1519 153 122 0 chr9 114632505 114632759 -27638685 - AluSg SINE Alu -25 285 1 311 125 0 0 chr9 114632759 114632806 -27638638 - L1MB3 LINE L1 -41 6142 6096 5047 125 32 9 chr9 114632819 114633377 -27638067 - L1MA4 LINE L1 -281 6019 5476 2325 121 0 0 chr9 114633377 114633690 -27637754 - AluSq SINE Alu 0 313 1 5047 125 32 9 chr9 114633690 114634693 -27636751 - L1MA4 LINE L1 -824 5476 4429 * 9132 193 54 30 chr9 114634685 114635007 -27636437 - L1 LINE L1 -1534 4794 4481 2207 97 24 0 chr9 114635007 114635297 -27636147 - AluSx SINE Alu -15 297 1 9132 193 54 30 chr9 114635297 114636256 -27635188 - L1 LINE L1 -1847 4481 3547 1842 170 24 0 chr9 114636256 114636544 -27634900 - AluJb SINE Alu -14 298 4 9132 193 54 30 chr9 114636544 114640004 -27631440 - L1 LINE L1 -2781 3547 3 259 277 0 0 chr9 114640009 114640074 -27631370 + HAL1 LINE L1 2430 2494 -13 2208 132 3 0 chr9 114640079 114640390 -27631054 - AluSq SINE Alu -1 312 1 25 0 0 0 chr9 114640394 114640419 -27631025 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 114640592 114640621 -27630823 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr9 114640732 114640766 -27630678 + AT_rich Low_complexity Low_complexity 1 34 0 34 79 0 0 chr9 114640991 114641067 -27630377 + AT_rich Low_complexity Low_complexity 1 76 0 1435 165 8 13 chr9 114641087 114641324 -27630120 - AluJo SINE Alu -22 290 55 249 250 18 18 chr9 114641335 114641391 -27630053 - MIR SINE MIR -137 71 16 2139 105 7 10 chr9 114641782 114642076 -27629368 - AluSq SINE Alu -20 293 1 21 0 0 0 chr9 114642465 114642486 -27628958 + AT_rich Low_complexity Low_complexity 1 21 0 359 282 133 5 chr9 114643075 114643263 -27628181 - L1ME LINE L1 -339 5782 5571 1093 267 99 22 chr9 114643265 114643608 -27627836 + LTR33 LTR ERVL 1 381 -140 3203 158 29 71 chr9 114643608 114644329 -27627115 - LTR8 LTR ERV1 0 691 1 1093 267 99 22 chr9 114644329 114644390 -27627054 + LTR33 LTR ERVL 381 436 -85 195 361 18 30 chr9 114644908 114645077 -27626367 + L2 LINE L2 2035 2201 -1113 * 612 218 85 66 chr9 114645075 114645264 -27626180 - L2 LINE L2 0 3313 3118 2124 137 0 10 chr9 114645264 114645570 -27625874 + AluSx SINE Alu 1 303 -9 612 218 85 66 chr9 114645570 114645591 -27625853 - L2 LINE L2 -195 3118 3099 2232 126 0 0 chr9 114645599 114645893 -27625551 + AluSx SINE Alu 5 298 -14 189 0 0 0 chr9 114645893 114645914 -27625530 + (GA)n Simple_repeat Simple_repeat 2 22 0 808 136 14 7 chr9 114645914 114646061 -27625383 + L1MB8 LINE L1 5823 5970 -208 416 284 11 0 chr9 114646061 114646156 -27625288 - MER5A DNA MER1_type -85 104 9 242 356 10 20 chr9 114646220 114646321 -27625123 + L2 LINE L2 2878 2977 -336 579 268 153 0 chr9 114646462 114646619 -27624825 + MER5A DNA MER1_type 9 189 0 1792 158 0 21 chr9 114648219 114648503 -27622941 + AluSx SINE Alu 1 278 -34 261 0 0 0 chr9 114648503 114648532 -27622912 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 250 242 0 61 chr9 114648640 114648706 -27622738 + MIR SINE MIR 61 122 -140 1921 115 0 4 chr9 114648741 114649010 -27622434 + AluY SINE Alu 34 301 -10 736 262 45 20 chr9 114649013 114649215 -27622229 + MIR SINE MIR 12 218 -44 * 2719 293 101 83 chr9 114649213 114650476 -27620968 + L2 LINE L2 1016 2256 -1057 2562 167 51 15 chr9 114650476 114650930 -27620514 - MER70A LTR ERVL 0 472 3 2719 293 101 83 chr9 114650930 114651416 -27620028 + L2 LINE L2 2256 2732 -581 1849 142 105 6 chr9 114651416 114651748 -27619696 - MLT1A1 LTR MaLR 0 365 1 2719 293 101 83 chr9 114651748 114652256 -27619188 + L2 LINE L2 2732 3303 -10 2151 75 4 4 chr9 114652957 114653235 -27618209 + AluY SINE Alu 26 303 -8 1597 146 24 49 chr9 114653235 114653564 -27617880 + Tigger1 DNA MER2_type 1 321 -2097 * 7775 114 45 10 chr9 114653561 114654843 -27616601 + Tigger1 DNA MER2_type 983 2309 -109 843 47 0 9 chr9 114654843 114654950 -27616494 - AluSg/x SINE Alu -9 300 195 321 121 0 0 chr9 114654950 114655008 -27616436 + Alu SINE Alu 243 300 0 1301 92 0 0 chr9 114655027 114655190 -27616254 - AluSq SINE Alu -112 201 39 460 145 24 0 chr9 114655193 114655276 -27616168 + Tigger1 DNA MER2_type 2300 2384 -34 258 354 117 31 chr9 114655629 114655852 -27615592 + L2 LINE L2 2809 3050 -222 23 105 0 0 chr9 114656082 114656168 -27615276 + AT_rich Low_complexity Low_complexity 1 86 0 351 282 112 58 chr9 114656865 114657006 -27614438 + MIR SINE MIR 45 202 -60 495 56 0 112 chr9 114657006 114657095 -27614349 + MADE1 DNA Mariner 2 80 0 351 282 112 58 chr9 114657095 114657159 -27614285 + MIR SINE MIR 202 261 -1 21 0 0 0 chr9 114657301 114657322 -27614122 + AT_rich Low_complexity Low_complexity 1 21 0 2342 72 0 10 chr9 114657337 114657629 -27613815 - AluSg SINE Alu -21 289 1 1717 115 10 28 chr9 114657734 114658086 -27613358 + Tigger4(Zombi) DNA MER2_type 1 2730 -1 1832 145 3 63 chr9 114659055 114659372 -27612072 + AluSx SINE Alu 1 298 -14 216 0 0 0 chr9 114660375 114660399 -27611045 + (ATG)n Simple_repeat Simple_repeat 2 25 0 2183 87 3 7 chr9 114660419 114660708 -27610736 - AluSx SINE Alu -24 288 1 21 0 0 0 chr9 114660831 114660852 -27610592 + AT_rich Low_complexity Low_complexity 1 21 0 2188 92 27 0 chr9 114660857 114661149 -27610295 + AluSx SINE Alu 2 301 -11 28 48 0 0 chr9 114663142 114663184 -27608260 + AT_rich Low_complexity Low_complexity 1 42 0 353 317 122 41 chr9 114663468 114663739 -27607705 + L1ME LINE L1 4693 4985 -1161 2127 109 0 0 chr9 114663762 114664072 -27607372 + AluSx SINE Alu 1 310 0 227 262 0 0 chr9 114664537 114664598 -27606846 + L1ME LINE L1 5631 5691 -430 1802 158 40 13 chr9 114664696 114664994 -27606450 + AluJo SINE Alu 7 312 0 406 285 101 25 chr9 114665169 114665485 -27605959 + L1M4 LINE L1 3897 4236 -1910 33 66 0 0 chr9 114665665 114665726 -27605718 + AT_rich Low_complexity Low_complexity 1 61 0 2019 248 147 36 chr9 114665751 114666455 -27604989 + HAL1 LINE L1 1219 1843 -664 189 94 0 0 chr9 114666455 114666487 -27604957 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2019 248 147 36 chr9 114666487 114666503 -27604941 + HAL1 LINE L1 1843 1856 -651 2266 165 134 30 chr9 114666503 114667001 -27604443 + MER44D DNA MER2_type 1 605 0 2019 248 147 36 chr9 114667001 114667358 -27604086 + HAL1 LINE L1 1856 2417 -90 2307 105 0 0 chr9 114667401 114667697 -27603747 + AluSx SINE Alu 1 296 -16 23 33 0 0 chr9 114668112 114668142 -27603302 + AT_rich Low_complexity Low_complexity 1 30 0 2232 102 0 13 chr9 114668160 114668473 -27602971 - AluSc SINE Alu 0 309 1 1855 122 48 10 chr9 114669236 114669531 -27601913 + AluSx SINE Alu 1 306 -6 504 181 99 53 chr9 114669673 114669731 -27601713 - MER96B DNA MER1_type? -237 180 126 912 104 7 0 chr9 114669731 114669875 -27601569 - L1MB7 LINE L1 -2 6182 6038 504 181 99 53 chr9 114669875 114669987 -27601457 - MER96B DNA MER1_type? -291 126 2 23 33 0 0 chr9 114670148 114670178 -27601266 + AT_rich Low_complexity Low_complexity 1 30 0 2562 55 0 10 chr9 114670197 114670509 -27600935 - AluSc SINE Alu 0 309 1 388 264 46 0 chr9 114670514 114670601 -27600843 - MIR SINE MIR -119 143 53 2671 75 22 34 chr9 114670635 114671049 -27600395 + L1MA1 LINE L1 5894 6302 0 2259 114 7 7 chr9 114671276 114671584 -27599860 - AluSq SINE Alu -4 309 2 224 229 0 0 chr9 114671941 114671989 -27599455 + L3b LINE CR1 1534 1581 -2 228 184 0 0 chr9 114672675 114672724 -27598720 + CT-rich Low_complexity Low_complexity 1 49 0 2446 96 0 0 chr9 114673412 114673724 -27597720 + AluSx SINE Alu 1 312 0 319 360 74 19 chr9 114674201 114674459 -27596985 - L3 LINE CR1 -12 1565 1294 215 372 13 0 chr9 114674517 114674595 -27596849 - L2 LINE L2 0 3272 3194 2182 113 0 3 chr9 114674989 114675281 -27596163 - AluSq SINE Alu -18 295 5 601 184 46 0 chr9 114675292 114675444 -27596000 - MER53 DNA DNA -27 162 4 434 110 0 170 chr9 114675998 114676071 -27595373 - MER45A DNA AcHobo -1404 177 124 783 167 0 16 chr9 114676071 114676197 -27595247 + FLAM_A SINE Alu 1 124 -9 434 110 0 170 chr9 114676197 114676223 -27595221 - MER45A DNA AcHobo -1457 124 95 1368 126 0 4 chr9 114676226 114676457 -27594987 + L1MA8 LINE L1 6056 6285 -6 28 0 0 0 chr9 114676468 114676496 -27594948 + AT_rich Low_complexity Low_complexity 1 28 0 759 122 0 0 chr9 114676496 114676603 -27594841 - U6 snRNA snRNA 0 107 1 385 293 81 0 chr9 114676617 114676716 -27594728 - MER45A DNA AcHobo -71 107 1 632 292 101 17 chr9 114676881 114676898 -27594546 - L3 LINE CR1 -732 845 831 2087 133 0 0 chr9 114676898 114677191 -27594253 - AluSx SINE Alu -17 295 3 632 292 101 17 chr9 114677191 114677461 -27593983 - L3 LINE CR1 -746 831 534 223 307 0 30 chr9 114677618 114677719 -27593725 + GA-rich Low_complexity Low_complexity 3 100 0 318 335 117 68 chr9 114678359 114678574 -27592870 + L2 LINE L2 2936 3172 -100 2104 87 0 93 chr9 114678574 114678918 -27592526 + AluSx SINE Alu 1 312 0 318 335 117 68 chr9 114678918 114679009 -27592435 + L2 LINE L2 3172 3257 -15 244 286 0 0 chr9 114679015 114679071 -27592373 + GA-rich Low_complexity Low_complexity 4 59 0 1668 165 70 0 chr9 114680203 114680318 -27591126 + AluJb SINE Alu 1 107 -205 315 0 0 0 chr9 114680318 114680353 -27591091 + (CA)n Simple_repeat Simple_repeat 2 36 0 1668 165 70 0 chr9 114680353 114680509 -27590935 + AluJb SINE Alu 107 291 -21 277 309 79 63 chr9 114680676 114681042 -27590402 - L2 LINE L2 -1665 1649 1278 313 338 244 16 chr9 114681065 114681730 -27589714 - L2 LINE L2 -2201 1113 298 2141 115 7 7 chr9 114681768 114682072 -27589372 + AluSx SINE Alu 1 304 -8 219 36 0 0 chr9 114682431 114682459 -27588985 + (T)n Simple_repeat Simple_repeat 1 28 0 850 161 0 0 chr9 114682883 114683001 -27588443 + FLAM_C SINE Alu 1 118 -15 2020 144 0 25 chr9 114683039 114683359 -27588085 + AluSx SINE Alu 1 312 0 2161 132 0 3 chr9 114683363 114683673 -27587771 + AluSx SINE Alu 1 309 -3 536 236 200 0 chr9 114683952 114684117 -27587327 - MIR SINE MIR -2 260 63 330 271 222 7 chr9 114684682 114684826 -27586618 - MIR SINE MIR -35 227 53 270 348 42 17 chr9 114685183 114685301 -27586143 - MIR SINE MIR -55 153 33 2345 90 3 3 chr9 114685502 114685802 -27585642 + AluSq SINE Alu 1 300 -13 465 315 99 0 chr9 114686081 114686243 -27585201 - MER91A DNA MER1_type -11 185 8 2249 116 0 3 chr9 114686405 114686706 -27584738 - AluSx SINE Alu -12 300 1 249 139 0 0 chr9 114686908 114686951 -27584493 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 1778 167 3 25 chr9 114688291 114688608 -27582836 - AluJb SINE Alu 0 312 3 357 250 0 0 chr9 114688853 114688929 -27582515 - HAL1 LINE L1 -354 2153 2078 454 307 68 44 chr9 114689060 114689156 -27582288 - L1MEc LINE L1 -3935 2461 2369 2321 104 0 0 chr9 114689156 114689455 -27581989 - AluSx SINE Alu -13 299 1 454 307 68 44 chr9 114689455 114689654 -27581790 - L1MEc LINE L1 -4027 2369 2159 2161 113 0 7 chr9 114689707 114690008 -27581436 - AluSc SINE Alu -10 299 1 431 344 60 48 chr9 114690307 114690391 -27581053 - HAL1 LINE L1 -742 1765 1683 1857 174 23 0 chr9 114690391 114690696 -27580748 - AluJb SINE Alu 0 312 1 431 344 60 48 chr9 114690696 114690945 -27580499 - HAL1 LINE L1 -824 1683 1428 227 267 133 0 chr9 114691061 114691136 -27580308 + L2 LINE L2 3225 3309 -4 345 276 78 46 chr9 114691141 114691424 -27580020 - L1MEc LINE L1 -4906 1299 1008 2443 66 3 10 chr9 114691450 114691754 -27579690 - AluSp SINE Alu -11 302 1 613 217 0 0 chr9 114691755 114691884 -27579560 - L1MB7 LINE L1 -23 6161 6033 2159 114 0 0 chr9 114691890 114692179 -27579265 - AluSx SINE Alu -23 289 1 485 131 36 0 chr9 114692180 114692264 -27579180 - L1ME1 LINE L1 -269 5897 5811 565 171 19 25 chr9 114692552 114692710 -27578734 + CT-rich Low_complexity Low_complexity 4 160 0 976 101 0 43 chr9 114692717 114692905 -27578539 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1814 173 17 0 chr9 114693440 114693741 -27577703 - AluJo SINE Alu -2 310 5 195 42 0 0 chr9 114693751 114693775 -27577669 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1858 155 0 33 chr9 114693782 114694086 -27577358 - AluSq SINE Alu -19 294 1 2328 107 3 0 chr9 114694198 114694508 -27576936 - AluSp SINE Alu -2 311 1 2129 85 29 4 chr9 114695281 114695600 -27575844 - AluSc SINE Alu 0 326 1 828 275 39 9 chr9 114696097 114696330 -27575114 + MIR SINE MIR 23 262 0 2288 83 7 0 chr9 114696428 114696728 -27574716 + AluY SINE Alu 1 302 -9 3427 152 21 31 chr9 114697537 114697852 -27573592 - L1MB3 LINE L1 -1 6182 5874 2334 98 0 0 chr9 114697852 114698157 -27573287 - AluY SINE Alu -6 305 1 3427 152 21 31 chr9 114698157 114698454 -27572990 - L1MB3 LINE L1 -309 5874 5576 3728 146 16 71 chr9 114698474 114699179 -27572265 + LTR8 LTR ERV1 1 666 -25 335 164 0 0 chr9 114699192 114699247 -27572197 + LTR8 LTR ERV1 635 689 -2 2250 109 3 0 chr9 114699842 114700144 -27571300 + AluSx SINE Alu 1 303 -9 3595 154 45 13 chr9 114700269 114700872 -27570572 + LTR26E LTR ERV1 1 622 0 2054 116 7 20 chr9 114701130 114701424 -27570020 + AluSx SINE Alu 3 292 -20 227 261 27 73 chr9 114701857 114701998 -27569446 + MIR SINE MIR 34 167 -62 1691 166 14 0 chr9 114702163 114702469 -27568975 - AluSx SINE Alu 0 310 1 469 288 118 71 chr9 114702641 114703131 -27568313 + L1ME4a LINE L1 5544 6056 -65 694 88 22 140 chr9 114703675 114703811 -27567633 + MLT1C LTR MaLR 2 121 -346 5675 192 2 3 chr9 114703914 114704887 -27566557 - MST-int LTR MaLR -679 972 1 364 303 59 20 chr9 114705881 114706033 -27565411 + MIR SINE MIR 13 170 -92 583 155 0 0 chr9 114706351 114706435 -27565009 - AluSg1 SINE Alu -223 86 3 2111 124 0 3 chr9 114706603 114706901 -27564543 + AluSx SINE Alu 1 297 -15 2182 107 3 13 chr9 114707143 114707452 -27563992 + AluSq SINE Alu 1 306 -7 2385 81 0 13 chr9 114707991 114708298 -27563146 - AluY SINE Alu -8 303 1 1772 154 62 0 chr9 114708317 114708590 -27562854 - AluJb SINE Alu -22 290 1 2364 43 40 13 chr9 114708856 114709156 -27562288 - AluY SINE Alu -3 308 1 1998 151 0 0 chr9 114709466 114709764 -27561680 + AluSx SINE Alu 1 298 -14 876 137 0 22 chr9 114710806 114710945 -27560499 - FLAM_C SINE Alu -7 136 1 315 0 0 0 chr9 114711128 114711163 -27560281 + (CA)n Simple_repeat Simple_repeat 2 36 0 945 192 0 0 chr9 114711163 114711319 -27560125 + AluJb SINE Alu 136 291 -21 256 309 79 63 chr9 114711486 114711852 -27559592 - L2 LINE L2 -1665 1649 1278 271 341 247 17 chr9 114711875 114712538 -27558906 - L2 LINE L2 -2201 1113 298 2137 115 7 7 chr9 114712576 114712880 -27558564 + AluSx SINE Alu 1 304 -8 219 36 0 0 chr9 114713239 114713267 -27558177 + (T)n Simple_repeat Simple_repeat 1 28 0 850 161 0 0 chr9 114713691 114713809 -27557635 + FLAM_C SINE Alu 1 118 -15 1994 144 0 25 chr9 114713847 114714167 -27557277 + AluSx SINE Alu 1 312 0 2161 132 0 3 chr9 114714171 114714481 -27556963 + AluSx SINE Alu 1 309 -3 536 236 200 0 chr9 114714760 114714925 -27556519 - MIR SINE MIR -2 260 63 330 271 222 7 chr9 114715490 114715634 -27555810 - MIR SINE MIR -35 227 53 270 348 42 17 chr9 114715991 114716109 -27555335 - MIR SINE MIR -55 153 33 2326 100 0 0 chr9 114716310 114716609 -27554835 + AluSx SINE Alu 1 299 -13 267 264 11 11 chr9 114716618 114716705 -27554739 + L1MEc LINE L1 2375 2461 -3935 357 250 0 0 chr9 114716836 114716912 -27554532 + HAL1 LINE L1 2078 2153 -354 1778 167 3 25 chr9 114717157 114717474 -27553970 + AluJb SINE Alu 3 312 0 2107 141 0 0 chr9 114718317 114718616 -27552828 + AluSx SINE Alu 1 299 -13 319 288 129 55 chr9 114719027 114719190 -27552254 - MIR SINE MIR -67 195 21 252 324 0 0 chr9 114719192 114719266 -27552178 + MIR SINE MIR 189 262 0 2161 113 36 0 chr9 114720114 114720415 -27551029 - AluSx SINE Alu 0 312 1 378 311 23 8 chr9 114720639 114720771 -27550673 - MER94 DNA DNA 0 134 1 3509 170 19 74 chr9 114721276 114722007 -27549437 - LTR8 LTR ERV1 0 691 1 36 0 0 0 chr9 114722618 114722654 -27548790 + AT_rich Low_complexity Low_complexity 1 36 0 1268 103 0 0 chr9 114722654 114722810 -27548634 - AluJb SINE Alu -140 172 17 1755 134 3 88 chr9 114723363 114723683 -27547761 - MER4A LTR ERV1 0 664 372 639 102 10 10 chr9 114723735 114723833 -27547611 - MER4A LTR ERV1 -566 98 1 233 248 29 95 chr9 114723843 114723948 -27547496 + MIR3 SINE MIR 111 208 0 574 189 75 0 chr9 114724270 114724376 -27547068 - FLAM_C SINE Alu -19 114 1 563 237 85 85 chr9 114724377 114724752 -27546692 - MER58D DNA MER1_type -11 375 1 1090 229 178 6 chr9 114724842 114725157 -27546287 - MLT1G LTR MaLR -199 391 23 2087 145 0 0 chr9 114725163 114725459 -27545985 - AluJb SINE Alu -15 297 2 373 206 113 31 chr9 114726363 114726460 -27544984 + MIR SINE MIR 84 188 -74 2697 132 62 0 chr9 114726788 114727191 -27544253 + MSTC LTR MaLR 1 428 0 186 327 0 0 chr9 114727308 114727363 -27544081 - L2 LINE L2 -493 2821 2767 419 291 94 8 chr9 114727388 114727515 -27543929 + MIR SINE MIR 24 161 -101 197 295 0 0 chr9 114727639 114727700 -27543744 - L2 LINE L2 -661 2653 2593 370 267 42 33 chr9 114728232 114728352 -27543092 - MER20 DNA MER1_type -20 199 79 2370 86 0 7 chr9 114728352 114728656 -27542788 - AluSg SINE Alu -8 302 1 426 188 12 12 chr9 114729275 114729360 -27542084 - MER20 DNA MER1_type -134 85 1 1960 79 105 0 chr9 114729410 114729676 -27541768 + AluSx SINE Alu 1 294 -18 22 0 0 0 chr9 114730157 114730179 -27541265 + AT_rich Low_complexity Low_complexity 1 22 0 2131 119 0 3 chr9 114730268 114730561 -27540883 - AluSg SINE Alu -18 292 1 206 250 62 0 chr9 114731090 114731154 -27540290 + L2 LINE L2 3246 3313 0 226 295 205 0 chr9 114731172 114731250 -27540194 + MIR SINE MIR 27 120 -88 265 292 97 69 chr9 114732111 114732255 -27539189 - L2 LINE L2 -15 3257 3110 234 317 69 62 chr9 114732516 114732661 -27538783 - L2 LINE L2 -527 2787 2642 347 289 41 0 chr9 114732676 114732773 -27538671 + L2 LINE L2 3197 3297 -16 475 297 124 19 chr9 114733230 114733439 -27538005 + MIR SINE MIR 18 248 -14 1266 123 6 6 chr9 114733451 114733630 -27537814 - AluSg/x SINE Alu 0 312 134 2238 116 3 3 chr9 114733630 114733933 -27537511 - AluSx SINE Alu -9 303 1 471 321 15 0 chr9 114733963 114734094 -27537350 + MLT1J LTR MaLR 1 133 -378 821 290 65 3 chr9 114734134 114734427 -27537017 + L1ME4a LINE L1 5494 5804 -366 601 237 141 61 chr9 114734918 114735180 -27536264 + MLT1J LTR MaLR 229 511 0 198 208 0 0 chr9 114735236 114735284 -27536160 + (CA)n Simple_repeat Simple_repeat 1 48 0 911 274 63 50 chr9 114735293 114735773 -27535671 + L1P1 LINE L1 5334 5833 -322 227 239 114 76 chr9 114735785 114735969 -27535475 + L1ME4a LINE L1 5917 6107 -14 2185 92 6 50 chr9 114735992 114736309 -27535135 - AluSx SINE Alu -9 303 1 23 33 0 0 chr9 114736331 114736361 -27535083 + AT_rich Low_complexity Low_complexity 1 30 0 2130 125 0 0 chr9 114737646 114737943 -27533501 - AluSx SINE Alu -14 298 2 21 0 0 0 chr9 114737948 114737969 -27533475 + AT_rich Low_complexity Low_complexity 1 21 0 2223 87 3 7 chr9 114738092 114738381 -27533063 + AluSx SINE Alu 1 288 -24 216 0 0 0 chr9 114738401 114738425 -27533019 + (CAT)n Simple_repeat Simple_repeat 2 25 0 2437 39 4 0 chr9 114739064 114739366 -27532078 + AluY SINE Alu 1 303 0 1963 147 0 23 chr9 114739424 114739730 -27531714 + AluJb SINE Alu 3 301 -11 1503 226 26 13 chr9 114740195 114740504 -27530940 + LTR16A LTR ERVL 138 450 0 602 339 59 8 chr9 114740545 114740902 -27530542 - L2 LINE L2 -510 2804 2430 798 247 14 104 chr9 114741225 114741428 -27530016 + MIR SINE MIR 2 222 -40 2392 93 0 7 chr9 114741428 114741730 -27529714 - AluSx SINE Alu -12 300 1 798 247 14 104 chr9 114741730 114741742 -27529702 + MIR SINE MIR 222 233 -29 1983 160 3 3 chr9 114741742 114742049 -27529395 - AluJo SINE Alu 0 312 6 798 247 14 104 chr9 114742049 114742119 -27529325 + MIR SINE MIR 233 262 0 327 315 16 24 chr9 114742121 114742248 -27529196 + L2 LINE L2 3187 3312 -1 631 275 76 70 chr9 114742258 114742560 -27528884 + MLT1J LTR MaLR 7 310 -201 2247 118 3 0 chr9 114742947 114743251 -27528193 - AluSq SINE Alu -7 306 2 1680 189 65 130 chr9 114743757 114743925 -27527519 - MLT1D LTR MaLR 0 505 328 2194 122 0 6 chr9 114743925 114744237 -27527207 - AluSg SINE Alu 0 310 1 1927 151 3 3 chr9 114744239 114744537 -27526907 - AluJb SINE Alu -14 298 1 1680 189 65 130 chr9 114744537 114744905 -27526539 - MLT1D LTR MaLR -178 327 1 419 378 41 30 chr9 114745118 114745298 -27526146 + L3 LINE CR1 69 256 -1321 1973 108 0 0 chr9 114745298 114745558 -27525886 - AluSq SINE Alu -53 260 1 419 378 41 30 chr9 114745558 114745716 -27525728 + L3 LINE CR1 256 411 -1166 1021 194 9 46 chr9 114745800 114746016 -27525428 - MER63A DNA MER1_type 0 210 3 266 258 16 0 chr9 114746029 114746091 -27525353 + L2 LINE L2 3210 3272 0 192 125 0 0 chr9 114746198 114746230 -27525214 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 279 308 98 21 chr9 114746502 114746645 -27524799 + L3 LINE CR1 1126 1279 -298 213 261 54 43 chr9 114746656 114746748 -27524696 + MER91C DNA MER1_type 33 125 -15 1295 104 0 16 chr9 114747003 114747186 -27524258 - AluSc SINE Alu 0 309 130 314 302 99 11 chr9 114747261 114747443 -27524001 - MIR SINE MIR -12 250 53 2086 114 0 0 chr9 114748819 114749091 -27522353 + AluSq SINE Alu 1 272 -41 2050 141 3 0 chr9 114749818 114750270 -27521174 - AluSx SINE Alu 0 453 1 644 276 123 25 chr9 114750390 114750453 -27520991 - L1MC/D LINE L1 -2141 5667 5612 2161 39 0 35 chr9 114750453 114750748 -27520696 - AluY SINE Alu 0 320 35 644 276 123 25 chr9 114750748 114750886 -27520558 - L1MC/D LINE L1 -2196 5612 5445 2061 133 0 37 chr9 114751019 114751343 -27520101 + AluSx SINE Alu 1 312 0 219 290 14 0 chr9 114751351 114751420 -27520024 + GA-rich Low_complexity Low_complexity 3 72 0 2394 99 0 6 chr9 114751420 114751770 -27519674 + AluSg SINE Alu 1 348 0 3364 130 35 8 chr9 114752470 114752863 -27518581 + MER1A DNA MER1_type 1 413 -2289 2255 117 13 0 chr9 114752863 114753171 -27518273 + AluSx SINE Alu 1 312 0 3364 130 35 8 chr9 114753171 114753292 -27518152 + MER1A DNA MER1_type 413 529 0 1665 172 45 3 chr9 114753445 114753735 -27517709 - AluJo SINE Alu -10 302 1 1308 66 0 0 chr9 114754485 114754636 -27516808 - AluSg/x SINE Alu -28 282 132 2272 92 0 0 chr9 114754636 114754928 -27516516 - AluY SINE Alu -16 295 4 495 300 0 20 chr9 114755278 114755428 -27516016 - ERVL LTR ERVL -811 4953 4807 696 113 10 0 chr9 114755429 114755526 -27515918 - FRAM SINE Alu -15 161 64 2196 129 0 0 chr9 114755604 114755906 -27515538 - AluSx SINE Alu -8 304 3 852 162 116 5 chr9 114755911 114756065 -27515379 + Charlie5 DNA MER1_type 2366 2548 -37 2522 48 10 0 chr9 114756065 114756355 -27515089 + AluY SINE Alu 2 294 -17 852 162 116 5 chr9 114756355 114756398 -27515046 + Charlie5 DNA MER1_type 2548 2585 0 414 288 18 0 chr9 114756399 114756510 -27514934 - ERVL LTR ERVL -3489 2275 2163 801 306 64 80 chr9 114756644 114757287 -27514157 - ERVL LTR ERVL -3785 1979 1353 2375 101 0 0 chr9 114757287 114757584 -27513860 - AluSx SINE Alu -15 297 1 801 306 64 80 chr9 114757584 114757846 -27513598 - ERVL LTR ERVL -4411 1353 1088 2231 109 0 0 chr9 114757849 114758143 -27513301 + AluSx SINE Alu 2 295 -17 2121 133 10 3 chr9 114758786 114759080 -27512364 - AluSx SINE Alu -14 298 3 243 343 10 10 chr9 114759278 114759377 -27512067 + L2 LINE L2 2598 2696 -618 2252 66 21 3 chr9 114759377 114759666 -27511778 - AluSp SINE Alu -19 294 1 2068 118 10 22 chr9 114759989 114760303 -27511141 - AluSx SINE Alu -2 310 1 2051 140 0 0 chr9 114760641 114760933 -27510511 + AluSx SINE Alu 1 292 -20 1554 89 14 92 chr9 114760939 114761221 -27510223 - L1MA5A LINE L1 -5 6292 6033 2358 86 3 29 chr9 114761221 114761536 -27509908 - AluSq SINE Alu -6 307 1 254 348 29 0 chr9 114761545 114761683 -27509761 - HAL1 LINE L1 -783 1724 1583 2288 109 3 6 chr9 114763944 114764255 -27507189 + AluSx SINE Alu 1 310 -2 359 265 103 32 chr9 114764726 114764911 -27506533 - L2 LINE L2 -168 3104 2907 187 303 13 40 chr9 114765021 114765097 -27506347 - L2 LINE L2 -521 2793 2720 2261 116 3 0 chr9 114765409 114765710 -27505734 - AluSx SINE Alu -10 302 1 21 0 0 0 chr9 114765829 114765850 -27505594 + AT_rich Low_complexity Low_complexity 1 21 0 1943 107 0 4 chr9 114766238 114766546 -27504898 + AluSx SINE Alu 21 327 0 2314 136 28 58 chr9 114766825 114767069 -27504375 - L1MB7 LINE L1 -128 6056 5829 2327 101 0 13 chr9 114767069 114767385 -27504059 - AluSx SINE Alu 0 312 1 2314 136 28 58 chr9 114767385 114767575 -27503869 - L1MB7 LINE L1 -355 5829 5635 2257 103 3 0 chr9 114767776 114768078 -27503366 + AluSg SINE Alu 1 303 -7 2054 125 27 0 chr9 114768537 114768833 -27502611 + AluSx SINE Alu 1 304 -8 275 265 119 26 chr9 114769936 114770087 -27501357 - MIR SINE MIR -60 202 38 237 238 116 72 chr9 114771127 114771308 -27500136 + MIR3 SINE MIR 9 197 -11 1596 187 70 13 chr9 114771406 114771733 -27499711 - MLT1A1 LTR MaLR -7 498 14 220 205 205 0 chr9 114772046 114772124 -27499320 + MER5B DNA MER1_type 23 116 -62 230 229 0 0 chr9 114772210 114772258 -27499186 - MER5B DNA MER1_type -124 54 7 192 77 0 0 chr9 114773063 114773089 -27498355 + (A)n Simple_repeat Simple_repeat 1 26 0 37 0 0 0 chr9 114774502 114774539 -27496905 + AT_rich Low_complexity Low_complexity 1 37 0 2017 141 30 7 chr9 114775752 114776057 -27495387 - AluJb SINE Alu 0 312 1 2239 101 10 10 chr9 114777033 114777341 -27494103 + AluSg SINE Alu 1 308 -2 2011 149 3 0 chr9 114777684 114777986 -27493458 + AluSx SINE Alu 2 304 -8 25 0 0 0 chr9 114778013 114778038 -27493406 + AT_rich Low_complexity Low_complexity 1 25 0 209 309 21 21 chr9 114778600 114778697 -27492747 + (CATATA)n Simple_repeat Simple_repeat 1 97 0 403 278 74 6 chr9 114779783 114779959 -27491485 + L1ME4a LINE L1 5740 5927 -194 2620 55 0 0 chr9 114780051 114780361 -27491083 + AluY SINE Alu 2 311 0 2363 107 7 0 chr9 114780630 114780938 -27490506 + AluSx SINE Alu 1 310 -2 1944 138 10 3 chr9 114781169 114781466 -27489978 - AluSx SINE Alu -7 305 7 194 207 35 35 chr9 114781472 114781530 -27489914 + MER5B DNA MER1_type 115 172 -6 2296 82 10 13 chr9 114781811 114782117 -27489327 + AluSc SINE Alu 1 305 -4 360 0 0 0 chr9 114782158 114782198 -27489246 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr9 114782569 114782598 -27488846 + AT_rich Low_complexity Low_complexity 1 29 0 358 269 67 10 chr9 114782629 114782733 -27488711 - L2 LINE L2 0 3313 3204 2387 62 0 0 chr9 114783018 114783308 -27488136 - AluY SINE Alu -21 290 1 235 286 41 31 chr9 114783641 114783739 -27487705 + MIR SINE MIR 18 116 -146 824 181 0 0 chr9 114784009 114784142 -27487302 + AluJb SINE Alu 1 133 -179 252 67 0 0 chr9 114784145 114784175 -27487269 + Alu SINE Alu 221 250 -52 947 199 0 16 chr9 114784175 114784361 -27487083 + AluJo SINE Alu 85 267 -45 502 122 95 0 chr9 114784417 114784491 -27486953 - AluSg/x SINE Alu -22 290 210 926 126 21 14 chr9 114784667 114784810 -27486634 - AluSg SINE Alu -13 299 156 468 146 12 37 chr9 114784815 114784897 -27486547 + AluJb SINE Alu 57 136 -176 587 89 25 0 chr9 114784897 114784976 -27486468 + Alu SINE Alu 221 301 -11 1025 112 0 0 chr9 114784986 114785120 -27486324 - AluSg SINE Alu -159 151 18 248 127 16 95 chr9 114785140 114785156 -27486288 + AluYb8 SINE Alu 124 134 -174 1940 125 3 14 chr9 114785156 114785452 -27485992 + AluSc SINE Alu 1 293 -16 227 204 61 0 chr9 114786354 114786403 -27485041 - L2 LINE L2 0 3313 3262 1423 139 0 0 chr9 114786425 114786626 -27484818 - AluSg/x SINE Alu -17 293 93 875 97 127 0 chr9 114786629 114786763 -27484681 - AluJb SINE Alu -161 151 1 2179 156 49 20 chr9 114786868 114787259 -27484185 - L1MC1 LINE L1 0 6333 5932 450 142 11 197 chr9 114787510 114787617 -27483827 - MER104 DNA Tc2 -1724 174 113 2342 101 0 0 chr9 114787617 114787924 -27483520 + AluSg SINE Alu 1 307 -3 450 142 11 197 chr9 114787924 114787999 -27483445 - MER104 DNA Tc2 -1785 113 26 1763 150 10 24 chr9 114788081 114788375 -27483069 - AluJb SINE Alu -22 290 1 1599 75 4 22 chr9 114788597 114788824 -27482620 - AluSg/x SINE Alu 0 309 87 778 247 17 28 chr9 114789610 114789788 -27481656 - MIR SINE MIR -51 211 36 235 313 169 0 chr9 114789933 114790016 -27481428 - L2 LINE L2 -3 3269 3173 395 277 44 99 chr9 114790016 114790063 -27481381 + MLT1K LTR MaLR 227 275 -313 2182 99 3 10 chr9 114790063 114790357 -27481087 - AluSx SINE Alu -20 292 1 395 277 44 99 chr9 114790357 114790692 -27480752 + MLT1K LTR MaLR 275 588 0 2338 97 3 3 chr9 114791091 114791400 -27480044 + AluSg SINE Alu 1 309 -1 21 0 0 0 chr9 114792495 114792516 -27478928 + AT_rich Low_complexity Low_complexity 1 21 0 1054 166 114 0 chr9 114792645 114792838 -27478606 + MER20 DNA MER1_type 1 215 -4 21 57 0 0 chr9 114793342 114793377 -27478067 + AT_rich Low_complexity Low_complexity 1 35 0 543 145 111 2 chr9 114793738 114793875 -27477569 + L1MA8 LINE L1 6036 6187 -104 991 108 97 43 chr9 114793875 114794058 -27477386 + L1MA8 LINE L1 6094 6288 -3 1193 111 22 17 chr9 114794173 114794353 -27477091 + AluSx SINE Alu 1 181 -131 1820 138 14 11 chr9 114794353 114794636 -27476808 + AluSq SINE Alu 23 306 -7 1945 152 0 7 chr9 114796149 114796459 -27474985 + AluJo SINE Alu 1 308 -4 195 299 45 15 chr9 114796463 114796530 -27474914 + MER5A DNA MER1_type 47 115 -74 334 83 42 0 chr9 114796598 114796646 -27474798 - Alu SINE Alu -5 297 248 1112 211 18 0 chr9 114797148 114797366 -27474078 + AluJb SINE Alu 85 306 -6 23 33 0 0 chr9 114797767 114797797 -27473647 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 114799036 114799063 -27472381 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1215 86 86 0 chr9 114799387 114799561 -27471883 - MER30 DNA MER1_type -41 189 1 2148 99 3 30 chr9 114800091 114800393 -27471051 + AluSx SINE Alu 4 297 -15 396 211 200 0 chr9 114800601 114800691 -27470753 + HsTC2 DNA Tc2 14 121 -1777 240 111 0 0 chr9 114800905 114800941 -27470503 + (CA)n Simple_repeat Simple_repeat 2 37 0 393 205 112 40 chr9 114801048 114801231 -27470213 + MER5C DNA MER1_type 1 273 -51 2228 119 3 3 chr9 114801231 114801534 -27469910 - AluSx SINE Alu -9 303 1 393 205 112 40 chr9 114801534 114801590 -27469854 + MER5C DNA MER1_type 273 324 0 239 253 40 0 chr9 114801667 114801742 -27469702 + L1MEd LINE L1 6 83 -6036 216 0 0 0 chr9 114801777 114801801 -27469643 + (TA)n Simple_repeat Simple_repeat 2 25 0 230 130 0 0 chr9 114801861 114801915 -27469529 + LTR66 LTR ERVL 386 439 -171 1526 180 48 7 chr9 114801940 114802212 -27469232 - AluJo SINE Alu -29 283 1 2064 144 0 3 chr9 114802781 114803093 -27468351 + AluSx SINE Alu 1 311 -1 246 293 12 37 chr9 114803926 114804008 -27467436 - Charlie7 DNA MER1_type -2532 80 1 187 364 74 8 chr9 114804164 114804285 -27467159 - L2 LINE L2 -2 3311 3183 1960 126 0 4 chr9 114804613 114804882 -27466562 + AluSx SINE Alu 6 273 -39 1654 232 75 2 chr9 114805245 114805671 -27465773 - L1ME3A LINE L1 -6 6164 5708 544 263 0 25 chr9 114805735 114805895 -27465549 + L1MEc LINE L1 225 380 -6207 2396 87 0 13 chr9 114805899 114806208 -27465236 + AluSx SINE Alu 1 305 -7 580 181 36 3 chr9 114806236 114806381 -27465063 + L1MEc LINE L1 933 1043 -5366 607 219 144 12 chr9 114806686 114806846 -27464598 + MER5A DNA MER1_type 9 189 0 2107 108 7 7 chr9 114807097 114807419 -27464025 + AluSx SINE Alu 1 312 0 219 276 79 13 chr9 114807739 114807815 -27463629 - MER5A DNA MER1_type -107 82 2 2298 95 7 0 chr9 114808074 114808368 -27463076 + AluSq SINE Alu 1 296 -17 508 143 26 0 chr9 114808752 114808829 -27462615 - AluJo SINE Alu -13 299 221 * 568 169 8 51 chr9 114808826 114808944 -27462500 - AluJo SINE Alu -157 155 43 2209 111 0 3 chr9 114808952 114809249 -27462195 - AluSq SINE Alu -17 296 1 559 238 83 36 chr9 114809748 114809916 -27461528 + MER5B DNA MER1_type 1 176 -2 1957 139 0 0 chr9 114809952 114810232 -27461212 + AluJb SINE Alu 21 300 -12 2261 105 0 0 chr9 114810247 114810541 -27460903 - AluSx SINE Alu -14 298 5 1963 166 0 0 chr9 114810918 114811220 -27460224 + AluSx SINE Alu 1 302 -10 207 47 23 47 chr9 114811872 114811915 -27459529 + (GAAA)n Simple_repeat Simple_repeat 1 42 0 220 376 51 26 chr9 114811972 114812206 -27459238 - L2 LINE L2 -494 2820 2581 1331 79 28 17 chr9 114812290 114812467 -27458977 - L1PA11 LINE L1 0 6174 5996 1233 151 166 11 chr9 114812880 114813145 -27458299 + AluSg SINE Alu 1 306 -4 1635 158 38 38 chr9 114813204 114813496 -27457948 + AluJb SINE Alu 1 292 -20 240 111 0 0 chr9 114813497 114813533 -27457911 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr9 114813856 114813880 -27457564 + AT_rich Low_complexity Low_complexity 1 24 0 459 252 126 24 chr9 114814745 114814951 -27456493 + L1ME3 LINE L1 5599 5825 -296 415 287 37 0 chr9 114815004 114815112 -27456332 + L2 LINE L2 3201 3312 -1 231 200 0 22 chr9 114815149 114815194 -27456250 + CT-rich Low_complexity Low_complexity 3 46 0 485 251 94 58 chr9 114815760 114816035 -27455409 + L2 LINE L2 3028 3312 -1 26 50 0 0 chr9 114816781 114816821 -27454623 + GC_rich Low_complexity Low_complexity 1 40 0 226 296 0 20 chr9 114816842 114816940 -27454504 + G-rich Low_complexity Low_complexity 5 100 0 340 291 123 75 chr9 114816942 114817478 -27453966 + L1M2 LINE L1 822 1383 -5466 611 224 228 4 chr9 114817852 114818089 -27453355 + MER33 DNA MER1_type 5 294 -30 2421 71 0 7 chr9 114818332 114818641 -27452803 + AluSg1 SINE Alu 1 307 -2 2298 61 20 3 chr9 114818964 114819259 -27452185 + AluSp SINE Alu 1 300 -13 482 317 106 0 chr9 114819538 114819699 -27451745 - MER91A DNA MER1_type -11 185 8 2214 116 0 7 chr9 114819861 114820163 -27451281 - AluSx SINE Alu -12 300 1 1882 148 3 3 chr9 114820238 114820521 -27450923 - AluJb SINE Alu -29 283 1 882 248 89 15 chr9 114820522 114820792 -27450652 + L1ME3 LINE L1 5866 6155 -7 246 302 36 57 chr9 114820911 114821103 -27450341 - L2 LINE L2 -755 2559 2372 377 287 61 33 chr9 114821514 114821695 -27449749 + MIR SINE MIR 12 197 -65 543 79 13 0 chr9 114822009 114822085 -27449359 + L1PA16 LINE L1 6089 6165 -1 2278 92 7 0 chr9 114822090 114822385 -27449059 + AluSc SINE Alu 1 297 -12 1053 258 70 82 chr9 114822500 114823011 -27448433 - MLT1J LTR MaLR 0 511 7 362 315 16 24 chr9 114823021 114823148 -27448296 - L2 LINE L2 -1 3312 3187 871 247 14 104 chr9 114823150 114823220 -27448224 - MIR SINE MIR 0 262 187 1980 160 3 3 chr9 114823220 114823527 -27447917 + AluJo SINE Alu 6 312 0 871 247 14 104 chr9 114823527 114823539 -27447905 - MIR SINE MIR -75 187 176 2373 93 0 7 chr9 114823539 114823841 -27447603 + AluSx SINE Alu 1 300 -12 871 247 14 104 chr9 114823841 114824044 -27447400 - MIR SINE MIR -86 176 2 706 339 59 8 chr9 114824367 114824724 -27446720 + L2 LINE L2 2430 2804 -510 1495 226 26 13 chr9 114824765 114825074 -27446370 - LTR16A LTR ERVL 0 450 138 1946 147 0 23 chr9 114825539 114825845 -27445599 - AluJb SINE Alu -11 301 3 2392 47 4 0 chr9 114825903 114826205 -27445239 - AluY SINE Alu 0 303 1 1019 33 0 0 chr9 114826214 114826335 -27445109 - AluY SINE Alu -3 308 188 2256 109 6 6 chr9 114826562 114826874 -27444570 + AluSx SINE Alu 1 312 0 312 299 0 9 chr9 114826929 114827036 -27444408 + LTR16C LTR ERVL 376 481 -10 258 108 0 0 chr9 114827853 114827890 -27443554 - L1MCc LINE L1 -4993 1430 1394 320 221 13 13 chr9 114828008 114828085 -27443359 - MLT1K LTR MaLR -18 570 494 2452 65 20 0 chr9 114828109 114828403 -27443041 + AluSc SINE Alu 1 300 -9 920 161 0 0 chr9 114828592 114828722 -27442722 + FLAM_C SINE Alu 3 132 -1 821 245 24 77 chr9 114828738 114828981 -27442463 - L1MCc LINE L1 -4573 2549 2295 2343 110 3 0 chr9 114828981 114829291 -27442153 - AluSq SINE Alu -2 311 1 821 245 24 77 chr9 114829291 114829382 -27442062 - L1MCc LINE L1 -4827 2295 2034 4327 197 12 48 chr9 114829412 114831038 -27440406 - L1MA8 LINE L1 -25 6266 4699 1319 168 44 44 chr9 114831072 114831399 -27440045 + AluJo SINE Alu 9 335 0 1858 149 0 50 chr9 114831399 114831700 -27439744 + AluJb SINE Alu 1 286 -26 34 34 0 17 chr9 114831700 114831718 -27439726 + AT_rich Low_complexity Low_complexity 1 18 -40 2180 118 0 0 chr9 114831718 114832005 -27439439 + AluSx SINE Alu 1 287 -25 34 34 0 17 chr9 114832005 114832045 -27439399 + AT_rich Low_complexity Low_complexity 18 58 0 3103 236 56 38 chr9 114832050 114833432 -27438012 - L1MCc LINE L1 -4892 2049 642 934 269 26 45 chr9 114833517 114833816 -27437628 - L1MCc LINE L1 -5814 609 315 1630 164 60 4 chr9 114833816 114834097 -27437347 + AluJb SINE Alu 1 297 -15 1434 173 6 101 chr9 114834132 114834263 -27437181 - L1MCc LINE L1 -6093 330 188 1278 120 0 5 chr9 114834263 114834447 -27436997 + L1PB1 LINE L1 5969 6151 0 1434 173 6 101 chr9 114834447 114834662 -27436782 - L1MCc LINE L1 -6235 188 17 270 212 34 102 chr9 114834700 114834818 -27436626 - MLT1K LTR MaLR -321 267 158 2029 159 3 0 chr9 114835258 114835560 -27435884 + AluJb SINE Alu 1 303 -9 2189 135 0 0 chr9 114835892 114836196 -27435248 + AluSx SINE Alu 1 304 -8 408 293 60 0 chr9 114836511 114836627 -27434817 - L2 LINE L2 -255 3058 2936 1909 199 8 6 chr9 114836931 114837292 -27434152 - MLT1A1 LTR MaLR 0 365 4 40 21 0 0 chr9 114837376 114837423 -27434021 + AT_rich Low_complexity Low_complexity 1 47 0 2197 181 40 98 chr9 114837662 114838312 -27433132 + LTR9 LTR ERV1 1 612 0 294 290 0 0 chr9 114838570 114838663 -27432781 - L1M4 LINE L1 -2331 3815 3723 2047 136 7 13 chr9 114838672 114838847 -27432597 - AluSx SINE Alu -2 310 136 2904 19 0 0 chr9 114838847 114839163 -27432281 - AluYb8 SINE Alu -2 316 1 2047 136 7 13 chr9 114839163 114839295 -27432149 - AluSx SINE Alu -176 136 5 804 154 7 0 chr9 114839513 114839649 -27431795 + MLT1A1 LTR MaLR 2 138 -227 3814 175 69 56 chr9 114839649 114840476 -27430968 + MER21B LTR ERV1 1 838 -25 1307 201 18 0 chr9 114840497 114840726 -27430718 + MLT1A1 LTR MaLR 133 365 0 225 221 0 125 chr9 114840726 114840787 -27430657 - L2 LINE L2 -65 3248 3204 2719 122 54 5 chr9 114840787 114841214 -27430230 + MER83 LTR ERV1 1 448 0 225 221 0 125 chr9 114841214 114841256 -27430188 - L2 LINE L2 -109 3204 3158 962 268 196 28 chr9 114842269 114842398 -27429046 + L2 LINE L2 1535 1641 -1673 1791 153 89 9 chr9 114842398 114842745 -27428699 + THE1C LTR MaLR 1 375 0 962 268 196 28 chr9 114842745 114843160 -27428284 + L2 LINE L2 1641 2171 -1143 779 80 9 44 chr9 114843267 114843380 -27428064 - MSTA LTR MaLR 0 428 320 1468 235 32 40 chr9 114843381 114843515 -27427929 - MLT1H1 LTR MaLR -188 367 233 1648 123 146 4 chr9 114843515 114843775 -27427669 - AluSg SINE Alu -2 298 2 1468 235 32 40 chr9 114843775 114844010 -27427434 - MLT1H1 LTR MaLR -322 233 1 1058 281 52 8 chr9 114844010 114844377 -27427067 + L2 LINE L2 2315 2697 -617 1362 138 0 5 chr9 114844378 114844574 -27426870 - AluJb SINE Alu -13 299 105 6403 121 20 18 chr9 114844679 114845646 -27425798 + LTR5 LTR ERVK 1 969 0 372 169 0 0 chr9 114845719 114845778 -27425666 - AluJb SINE Alu -205 97 39 1209 303 86 4 chr9 114845780 114846161 -27425283 + L2 LINE L2 2693 3140 -173 2016 162 0 0 chr9 114846161 114846464 -27424980 - AluJb SINE Alu -7 305 3 1209 303 86 4 chr9 114846464 114846654 -27424790 + L2 LINE L2 3140 3313 0 626 146 0 0 chr9 114847261 114847357 -27424087 - AluSg/x SINE Alu -4 306 211 2452 81 3 3 chr9 114847624 114847931 -27423513 + AluSc SINE Alu 1 307 -2 510 275 163 0 chr9 114847977 114848137 -27423307 + MER5A DNA MER1_type 4 189 0 250 211 19 0 chr9 114848277 114848329 -27423115 + MIR SINE MIR 70 122 -140 961 168 0 97 chr9 114849123 114849277 -27422167 + L1MB7 LINE L1 16 143 -6399 2353 116 0 0 chr9 114849277 114849587 -27421857 + AluSx SINE Alu 1 310 -2 961 168 0 97 chr9 114849587 114849658 -27421786 + L1MB7 LINE L1 143 219 -6323 * 8937 200 38 35 chr9 114849656 114850963 -27420481 + L1MB7 LINE L1 3423 4725 -1957 387 0 0 0 chr9 114850963 114851006 -27420438 + (CA)n Simple_repeat Simple_repeat 2 44 0 8937 200 38 35 chr9 114851006 114851145 -27420299 + L1MB7 LINE L1 4725 4862 -1820 1714 188 3 10 chr9 114851145 114851449 -27419995 + AluJo SINE Alu 1 302 -10 8937 200 38 35 chr9 114851449 114851621 -27419823 + L1MB7 LINE L1 4862 5032 -1650 2199 123 0 0 chr9 114851621 114851914 -27419530 + AluSx SINE Alu 2 294 -18 8937 200 38 35 chr9 114851914 114852039 -27419405 + L1MB7 LINE L1 5032 5155 -1527 2036 128 44 0 chr9 114852039 114852336 -27419108 + AluSg SINE Alu 1 310 0 8937 200 38 35 chr9 114852336 114852829 -27418615 + L1MB7 LINE L1 5155 5645 -1037 2020 97 4 0 chr9 114852829 114853088 -27418356 + AluSp SINE Alu 36 295 -18 8937 200 38 35 chr9 114853088 114853211 -27418233 + L1MB7 LINE L1 5645 5766 -916 1762 166 7 14 chr9 114853211 114853507 -27417937 - AluJb SINE Alu -8 304 11 8937 200 38 35 chr9 114853507 114854125 -27417319 + L1MB7 LINE L1 5766 6414 -268 2453 86 3 0 chr9 114854125 114854429 -27417015 - AluSp SINE Alu -8 305 1 8937 200 38 35 chr9 114854429 114854699 -27416745 + L1MB7 LINE L1 6414 6682 0 1640 143 4 8 chr9 114855098 114855400 -27416044 + AluSx SINE Alu 34 334 0 1858 109 0 51 chr9 114855679 114855979 -27415465 - AluSx SINE Alu 0 305 20 183 338 60 82 chr9 114855991 114856260 -27415184 + L2 LINE L2 2977 3239 -33 1336 162 162 0 chr9 114856278 114856531 -27414913 - AluJb SINE Alu -18 294 1 377 310 11 0 chr9 114856546 114856720 -27414724 + (CATG)n Simple_repeat Simple_repeat 3 178 0 313 267 0 22 chr9 114856735 114856870 -27414574 + (TATG)n Simple_repeat Simple_repeat 2 133 0 744 188 0 0 chr9 114856893 114857010 -27414434 - FLAM_C SINE Alu -16 117 1 257 259 0 0 chr9 114858091 114858149 -27413295 - MIR SINE MIR -36 226 169 860 182 0 0 chr9 114858177 114858320 -27413124 + FLAM_C SINE Alu 1 143 0 327 218 146 27 chr9 114858320 114858430 -27413014 - MIR SINE MIR -139 123 1 2538 44 40 0 chr9 114858539 114858837 -27412607 + AluY SINE Alu 2 311 0 1751 104 4 4 chr9 114858971 114859222 -27412222 - AluY SINE Alu -21 290 40 2228 92 10 0 chr9 114859869 114860163 -27411281 + AluSc SINE Alu 1 297 -12 247 297 136 0 chr9 114860205 114860323 -27411121 + L2 LINE L2 3159 3292 -21 231 176 0 0 chr9 114860565 114860616 -27410828 + L1 LINE L1 2133 2183 -3963 21 36 0 0 chr9 114860654 114860682 -27410762 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 114860943 114860967 -27410477 + AT_rich Low_complexity Low_complexity 1 24 0 1717 186 16 3 chr9 114861048 114861355 -27410089 + AluJb SINE Alu 1 311 -1 781 124 55 7 chr9 114861739 114861884 -27409560 - L1MA9 LINE L1 -7 6305 6154 2119 132 0 0 chr9 114861899 114862195 -27409249 + AluSg SINE Alu 1 296 -14 2194 122 0 6 chr9 114862197 114862509 -27408935 + AluSg SINE Alu 1 310 0 969 146 20 0 chr9 114862526 114862677 -27408767 + MLT1D LTR MaLR 352 505 0 2247 118 3 0 chr9 114863183 114863487 -27407957 + AluSq SINE Alu 2 306 -7 1935 104 0 0 chr9 114863802 114864052 -27407392 - AluSg SINE Alu -60 250 1 2362 84 7 3 chr9 114864555 114864863 -27406581 + AluSx SINE Alu 1 309 -3 1106 127 12 0 chr9 114864863 114865028 -27406416 + AluSg/x SINE Alu 132 298 -12 2094 127 7 0 chr9 114865269 114865568 -27405876 + AluSx SINE Alu 1 301 -11 325 345 0 30 chr9 114865910 114866078 -27405366 - MIR3 SINE MIR -7 201 39 202 313 36 27 chr9 114866088 114866200 -27405244 + MIR SINE MIR 16 128 -134 1809 145 0 14 chr9 114866201 114866505 -27404939 - AluJb SINE Alu 0 312 32 208 243 43 0 chr9 114866512 114866582 -27404862 + MIR SINE MIR 183 255 -7 2131 112 3 23 chr9 114866774 114867077 -27404367 - AluSx SINE Alu -15 297 1 2096 131 0 7 chr9 114868012 114868339 -27403105 + AluSx SINE Alu 1 312 0 1673 185 24 10 chr9 114868344 114868636 -27402808 + AluJo SINE Alu 1 296 -16 717 197 0 7 chr9 114868711 114868848 -27402596 + AluJo SINE Alu 1 136 -176 2245 143 5 31 chr9 114868883 114869268 -27402176 - MLT1B LTR MaLR -8 382 8 390 42 0 0 chr9 114869275 114869323 -27402121 + (CA)n Simple_repeat Simple_repeat 1 48 0 2064 100 14 4 chr9 114869575 114869880 -27401564 - AluSx SINE Alu 0 308 1 330 135 0 0 chr9 114869883 114869935 -27401509 - FLAM_A SINE Alu -5 128 77 1258 132 28 0 chr9 114869935 114870117 -27401327 - AluSx SINE Alu -119 193 7 336 214 0 14 chr9 114870263 114870333 -27401111 + FLAM_A SINE Alu 10 78 -54 784 188 6 56 chr9 114870546 114870706 -27400738 - Tigger3(Golem) DNA MER2_type -2877 152 1 2161 112 3 14 chr9 114870994 114871289 -27400155 - AluSp SINE Alu -21 292 1 1373 120 0 5 chr9 114871374 114871565 -27399879 + AluJb SINE Alu 86 275 -37 197 65 32 0 chr9 114871565 114871596 -27399848 + (TA)n Simple_repeat Simple_repeat 2 33 0 1951 125 0 30 chr9 114872970 114873267 -27398177 + AluSx SINE Alu 12 299 -13 229 235 222 0 chr9 114873311 114873392 -27398052 + L1MC/D LINE L1 4735 4833 -1313 1913 138 31 0 chr9 114873451 114873742 -27397702 - AluJb SINE Alu -12 300 1 891 140 15 0 chr9 114873745 114873881 -27397563 - AluJb SINE Alu -174 138 1 21 36 0 0 chr9 114873987 114874015 -27397429 + AT_rich Low_complexity Low_complexity 1 28 0 388 246 157 34 chr9 114874052 114874288 -27397156 + L1MC/D LINE L1 5117 5381 -765 248 311 199 18 chr9 114874294 114874625 -27396819 + L1MC/D LINE L1 5404 5794 -2014 23 33 0 0 chr9 114875157 114875187 -27396257 + AT_rich Low_complexity Low_complexity 1 30 0 1400 124 29 14 chr9 114875629 114875838 -27395606 - AluJo SINE Alu -23 289 78 2401 81 0 0 chr9 114876252 114876547 -27394897 + AluY SINE Alu 1 295 -16 2135 129 3 0 chr9 114877202 114877512 -27393932 + AluSx SINE Alu 2 312 0 487 236 86 0 chr9 114879721 114879861 -27391583 - MIR SINE MIR -10 252 101 4206 116 8 76 chr9 114879982 114880722 -27390722 + LTR8 LTR ERV1 1 690 -1 2193 96 0 0 chr9 114880835 114881153 -27390291 - AluSx SINE Alu 0 322 5 2247 145 3 12 chr9 114881239 114881577 -27389867 - MER1B DNA MER1_type 0 337 3 1366 176 132 19 chr9 114882281 114882599 -27388845 - L1MB4 LINE L1 -1 6179 5826 2024 149 0 3 chr9 114883036 114883338 -27388106 - AluSx SINE Alu -11 301 1 1911 114 4 4 chr9 114883744 114884015 -27387429 + AluSc SINE Alu 16 286 -23 2427 90 0 7 chr9 114884344 114884654 -27386790 - AluSx SINE Alu -4 308 1 361 238 29 9 chr9 114884913 114885018 -27386426 + MIR SINE MIR 124 230 -32 506 260 17 64 chr9 114885035 114885208 -27386236 + MER5B DNA MER1_type 14 178 0 1807 151 22 45 chr9 114886130 114886441 -27385003 + AluJo SINE Alu 1 304 -8 2285 104 0 13 chr9 114887036 114887345 -27384099 - AluSx SINE Alu -7 305 1 340 252 148 9 chr9 114887486 114887601 -27383843 + L2 LINE L2 3136 3266 -6 269 167 0 17 chr9 114887604 114887664 -27383780 + GA-rich Low_complexity Low_complexity 4 62 0 2052 130 0 26 chr9 114888069 114888377 -27383067 + AluSx SINE Alu 1 300 -12 769 143 95 30 chr9 114888823 114888965 -27382479 + MER96B DNA MER1_type? 1 157 -260 2404 97 0 0 chr9 114888965 114889264 -27382180 - AluSx SINE Alu -13 299 1 769 143 95 30 chr9 114889264 114889289 -27382155 + MER96B DNA MER1_type? 157 179 -238 319 304 40 54 chr9 114889345 114889671 -27381773 + L2 LINE L2 2918 3312 -1 590 245 26 7 chr9 114889689 114889844 -27381600 - MIR SINE MIR -34 228 71 415 295 13 7 chr9 114889860 114890009 -27381435 + L2 LINE L2 2537 2686 -628 828 118 0 0 chr9 114890019 114890173 -27381271 - AluSp/q SINE Alu 0 326 173 2385 97 3 0 chr9 114890244 114890544 -27380900 + AluSx SINE Alu 1 301 -11 683 300 118 33 chr9 114890592 114890810 -27380634 + L2 LINE L2 2819 3017 -296 1319 152 178 22 chr9 114890810 114890930 -27380514 + AluJo SINE Alu 1 101 -211 267 31 0 0 chr9 114890930 114890962 -27380482 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1319 152 178 22 chr9 114890962 114891111 -27380333 + AluJo SINE Alu 101 312 0 683 300 118 33 chr9 114891111 114891348 -27380096 + L2 LINE L2 3017 3313 0 611 144 10 0 chr9 114892011 114892108 -27379336 - AluSc SINE Alu -43 266 169 * 713 150 42 0 chr9 114892107 114892227 -27379217 - AluSq/x SINE Alu -177 135 11 251 271 29 0 chr9 114892248 114892318 -27379126 + CT-rich Low_complexity Low_complexity 2 73 0 2197 109 0 0 chr9 114892456 114892769 -27378675 - AluSx SINE Alu 0 313 1 333 152 0 76 chr9 114892910 114892989 -27378455 + Charlie8 DNA MER1_type 91 163 -2254 428 225 0 54 chr9 114893943 114894054 -27377390 + L2 LINE L2 3209 3313 0 231 188 0 0 chr9 114894054 114894102 -27377342 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 474 297 0 66 chr9 114895386 114895598 -27375846 - MIR SINE MIR 0 262 65 2318 94 0 35 chr9 114895630 114895949 -27375495 - AluSx SINE Alu -4 308 1 2339 103 3 0 chr9 114896644 114896944 -27374500 + AluSx SINE Alu 1 301 -11 415 297 0 0 chr9 114897169 114897280 -27374164 - L2 LINE L2 -768 2546 2436 2308 98 0 10 chr9 114897478 114897783 -27373661 - AluSx SINE Alu -10 302 1 2002 112 45 0 chr9 114898319 114898606 -27372838 + AluSx SINE Alu 1 300 -12 2254 117 0 7 chr9 114898675 114898984 -27372460 - AluSq SINE Alu -6 307 1 2267 94 19 3 chr9 114899678 114899986 -27371458 - AluSp SINE Alu 0 313 1 290 311 10 34 chr9 114900122 114900331 -27371113 + HAL1 LINE L1 4 207 -2300 2222 102 3 0 chr9 114900339 114900633 -27370811 + AluSg SINE Alu 1 295 -15 1231 139 37 16 chr9 114900633 114900734 -27370710 + L1MA8 LINE L1 6032 6129 -162 2279 102 3 0 chr9 114900734 114901029 -27370415 - AluSg SINE Alu -14 296 1 1231 139 37 16 chr9 114901029 114901172 -27370272 + L1MA8 LINE L1 6129 6281 -10 1717 186 16 3 chr9 114901573 114901880 -27369564 - AluJb SINE Alu -1 311 1 24 0 0 0 chr9 114901961 114901985 -27369459 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr9 114902246 114902274 -27369170 + AT_rich Low_complexity Low_complexity 1 28 0 231 176 0 0 chr9 114902312 114902363 -27369081 - L1 LINE L1 -3963 2183 2133 224 327 40 0 chr9 114902622 114902723 -27368721 - L2 LINE L2 -50 3263 3159 2228 92 10 0 chr9 114902765 114903059 -27368385 - AluSc SINE Alu -12 297 1 2068 110 17 20 chr9 114903114 114903413 -27368031 - AluSx SINE Alu -14 298 1 21 57 0 0 chr9 114903998 114904033 -27367411 + AT_rich Low_complexity Low_complexity 1 35 0 326 322 41 45 chr9 114904110 114904377 -27367067 + L1ME LINE L1 3092 3357 -2789 8524 117 22 24 chr9 114904863 114904967 -27366477 - Tigger1 DNA MER2_type -1144 1274 1171 2116 108 0 3 chr9 114904967 114905253 -27366191 - AluSx SINE Alu -12 300 16 8524 117 22 24 chr9 114905253 114906144 -27365300 - Tigger1 DNA MER2_type -1247 1171 279 2133 131 7 0 chr9 114906144 114906441 -27365003 + AluSx SINE Alu 5 303 -9 8524 117 22 24 chr9 114906441 114906719 -27364725 - Tigger1 DNA MER2_type -2139 279 2 2227 119 0 3 chr9 114906768 114907079 -27364365 + AluSx SINE Alu 1 310 -2 421 269 11 96 chr9 114907087 114907369 -27364075 + L1ME LINE L1 5091 5348 -798 24 0 0 0 chr9 114907369 114907393 -27364051 + AT_rich Low_complexity Low_complexity 1 24 0 1255 135 5 0 chr9 114907393 114907586 -27363858 - L1PB2 LINE L1 -2 6149 5956 616 164 19 0 chr9 114907586 114907690 -27363754 - U6 snRNA snRNA -1 106 1 525 292 78 41 chr9 114907693 114908103 -27363341 + L1ME LINE L1 5337 5670 -451 26 30 0 0 chr9 114908103 114908136 -27363308 + AT_rich Low_complexity Low_complexity 1 33 0 2255 104 3 3 chr9 114908372 114908671 -27362773 - AluSg SINE Alu -11 299 1 392 277 44 99 chr9 114909070 114909405 -27362039 - MLT1K LTR MaLR 0 588 275 2203 99 3 10 chr9 114909405 114909699 -27361745 + AluSx SINE Alu 1 292 -20 392 277 44 99 chr9 114909699 114909746 -27361698 - MLT1K LTR MaLR -313 275 227 212 313 169 0 chr9 114909746 114909829 -27361615 + L2 LINE L2 3173 3269 -3 723 247 17 28 chr9 114909974 114910152 -27361292 + MIR SINE MIR 36 211 -51 671 296 33 33 chr9 114911153 114911393 -27360051 + MIR SINE MIR 17 256 -6 2033 144 7 0 chr9 114911397 114911696 -27359748 - AluSx SINE Alu -11 301 1 2246 99 3 0 chr9 114912319 114912611 -27358833 - AluSx SINE Alu -17 295 3 312 27 0 0 chr9 114912733 114912770 -27358674 + (TG)n Simple_repeat Simple_repeat 2 38 0 2233 113 0 0 chr9 114912785 114913078 -27358366 - AluSx SINE Alu -19 293 1 1451 144 0 5 chr9 114913208 114913416 -27358028 - AluJb SINE Alu -21 291 85 224 213 16 16 chr9 114913900 114913961 -27357483 + MIR SINE MIR 162 222 -40 2270 117 0 0 chr9 114914172 114914471 -27356973 + AluSx SINE Alu 1 299 -13 2150 133 3 0 chr9 114914732 114915033 -27356411 - AluSq SINE Alu -11 302 1 1032 197 30 0 chr9 114915058 114915256 -27356188 - L1MB5 LINE L1 -63 6111 5908 899 203 18 6 chr9 114915261 114915424 -27356020 - FAM SINE Alu -9 166 2 236 273 113 104 chr9 114915763 114916084 -27355360 - L2 LINE L2 -1234 2080 1763 2383 92 7 0 chr9 114916084 114916389 -27355055 + AluSx SINE Alu 3 309 -3 236 273 113 104 chr9 114916389 114916422 -27355022 - L2 LINE L2 -1551 1763 1732 1952 149 3 10 chr9 114916422 114916730 -27354714 - AluJb SINE Alu -6 306 1 236 273 113 104 chr9 114916730 114916836 -27354608 - L2 LINE L2 -1582 1732 1615 23 0 0 0 chr9 114917446 114917469 -27353975 + AT_rich Low_complexity Low_complexity 1 23 0 363 264 86 40 chr9 114918070 114918244 -27353200 - MIR SINE MIR -45 217 36 14366 121 21 40 chr9 114918309 114919157 -27352287 + Tigger1 DNA MER2_type 2 865 -1553 1717 195 0 21 chr9 114919157 114919498 -27351946 + AluJb SINE Alu 1 335 0 14366 121 21 40 chr9 114919498 114920255 -27351189 + Tigger1 DNA MER2_type 865 1551 -867 2374 96 0 7 chr9 114920255 114920557 -27350887 + AluSq SINE Alu 1 300 -13 14366 121 21 40 chr9 114920557 114921303 -27350141 + Tigger1 DNA MER2_type 1551 2310 -108 1029 173 0 0 chr9 114921309 114921477 -27349967 - AluJo SINE Alu -16 296 129 682 191 8 23 chr9 114921522 114921653 -27349791 - AluJo SINE Alu -169 133 5 714 145 26 0 chr9 114921655 114921772 -27349672 + Tigger1 DNA MER2_type 2299 2418 0 1563 201 52 3 chr9 114922388 114922696 -27348748 - MER58B DNA MER1_type 0 341 19 953 208 0 0 chr9 114924139 114924307 -27347137 - FRAM SINE Alu -8 168 1 270 268 14 14 chr9 114924424 114924495 -27346949 - MLT1L LTR MaLR -332 283 213 21 0 0 0 chr9 114924677 114924698 -27346746 + AT_rich Low_complexity Low_complexity 1 21 0 2129 119 3 0 chr9 114924832 114925155 -27346289 - AluSq SINE Alu 0 324 1 1704 205 28 3 chr9 114925509 114925836 -27345608 + MER58B DNA MER1_type 6 340 -1 216 0 0 0 chr9 114926472 114926496 -27344948 + (ATG)n Simple_repeat Simple_repeat 2 25 0 554 295 114 4 chr9 114926515 114926742 -27344702 - MIR SINE MIR -10 252 1 2359 87 0 25 chr9 114927036 114927357 -27344087 - AluSq SINE Alu 0 313 1 1798 134 32 29 chr9 114928291 114928568 -27342876 - AluJb SINE Alu -23 289 12 315 309 121 18 chr9 114928590 114929030 -27342414 - L1M4 LINE L1 -918 5228 4744 1799 189 3 0 chr9 114929038 114929334 -27342110 - AluJb SINE Alu -15 297 1 2186 110 7 0 chr9 114929341 114929661 -27341783 - AluSx SINE Alu 0 322 1 723 223 16 48 chr9 114930145 114930333 -27341111 + AluJb SINE Alu 120 301 -11 816 189 0 6 chr9 114930577 114930736 -27340708 + MER5B DNA MER1_type 1 158 -20 2461 58 0 19 chr9 114930795 114931104 -27340340 + AluY SINE Alu 9 311 0 21 36 0 0 chr9 114931354 114931382 -27340062 + AT_rich Low_complexity Low_complexity 1 28 0 969 89 0 0 chr9 114931460 114931584 -27339860 + FLAM_C SINE Alu 10 133 -10 2235 102 7 13 chr9 114932048 114932353 -27339091 - AluSq SINE Alu -10 303 1 430 306 72 34 chr9 114932391 114932626 -27338818 + MIR SINE MIR 16 259 -3 1866 155 21 0 chr9 114932673 114932957 -27338487 + AluJb SINE Alu 1 290 -22 2492 48 0 7 chr9 114933513 114933833 -27337611 - AluY SINE Alu 0 311 1 2064 143 0 10 chr9 114933835 114934142 -27337302 - AluSx SINE Alu -8 304 1 521 201 20 78 chr9 114934220 114934424 -27337020 - L1MEd LINE L1 -4943 1176 985 2087 138 14 0 chr9 114934509 114934798 -27336646 + AluSx SINE Alu 1 293 -19 577 282 46 10 chr9 114934957 114935152 -27336292 - L1MC4a LINE L1 -1762 6046 5845 2311 102 10 3 chr9 114935222 114935525 -27335919 - AluSq SINE Alu -6 307 3 650 239 104 38 chr9 114935526 114935815 -27335629 - L1MEd LINE L1 -5240 879 572 225 261 77 15 chr9 114935987 114936052 -27335392 - L1P LINE L1 -1355 4791 4723 2770 126 9 34 chr9 114936134 114936571 -27334873 + MSTB LTR MaLR 1 426 0 29 47 0 0 chr9 114937132 114937175 -27334269 + AT_rich Low_complexity Low_complexity 1 43 0 2393 67 0 0 chr9 114937175 114937474 -27333970 - L1PA8 LINE L1 -17 6155 5857 329 324 95 27 chr9 114937612 114937908 -27333536 + L1 LINE L1 3729 4044 -2102 435 269 181 41 chr9 114937944 114938215 -27333229 + L1 LINE L1 4137 4445 -1701 2192 94 25 0 chr9 114938367 114938653 -27332791 - AluY SINE Alu -14 297 5 342 147 43 9 chr9 114939319 114939435 -27332009 + (CA)n Simple_repeat Simple_repeat 1 120 0 290 270 81 54 chr9 114940083 114940231 -27331213 - MARNA DNA Mariner -129 457 306 2043 112 33 0 chr9 114940267 114940571 -27330873 + L1MA2 LINE L1 5991 6304 0 501 270 43 54 chr9 114940666 114940851 -27330593 - MARNA DNA Mariner -352 234 52 2326 104 0 0 chr9 114941677 114941974 -27329470 + AluSx SINE Alu 1 297 -15 3277 147 13 27 chr9 114942146 114942878 -27328566 + L1MA9 LINE L1 5097 5824 -488 485 167 0 62 chr9 114942880 114942976 -27328468 + FLAM_A SINE Alu 1 90 -52 323 133 0 17 chr9 114943013 114943073 -27328371 + (GGAGAA)n Simple_repeat Simple_repeat 5 63 0 2638 131 54 21 chr9 114943082 114943562 -27327882 + L1MA9 LINE L1 5817 6312 0 1988 130 0 29 chr9 114946856 114947164 -27324280 + AluSx SINE Alu 1 299 -13 229 235 222 0 chr9 114947208 114947289 -27324155 + L1 LINE L1 4735 4833 -1313 1913 138 31 0 chr9 114947348 114947639 -27323805 - AluJb SINE Alu -12 300 1 891 140 15 0 chr9 114947642 114947778 -27323666 - AluJb SINE Alu -174 138 1 21 36 0 0 chr9 114947884 114947912 -27323532 + AT_rich Low_complexity Low_complexity 1 28 0 339 248 167 34 chr9 114947948 114948182 -27323262 + L1MC/D LINE L1 5117 5381 -765 248 311 199 18 chr9 114948188 114948519 -27322925 + L1MC/D LINE L1 5404 5794 -2014 23 33 0 0 chr9 114949051 114949081 -27322363 + AT_rich Low_complexity Low_complexity 1 30 0 1400 124 29 14 chr9 114949523 114949732 -27321712 - AluJo SINE Alu -23 289 78 2401 81 0 0 chr9 114950146 114950441 -27321003 + AluY SINE Alu 1 295 -16 2135 129 3 0 chr9 114951096 114951406 -27320038 + AluSx SINE Alu 2 312 0 487 236 86 0 chr9 114953615 114953755 -27317689 - MIR SINE MIR -10 252 101 4206 116 8 76 chr9 114953876 114954616 -27316828 + LTR8 LTR ERV1 1 690 -1 2191 109 3 0 chr9 114954729 114955050 -27316394 - AluSx SINE Alu 0 322 1 595 254 66 62 chr9 114955225 114955469 -27315975 + MIR SINE MIR 18 262 0 415 222 35 28 chr9 114955508 114955652 -27315792 + L1 LINE L1 4882 5026 -1120 207 0 0 0 chr9 114956089 114956112 -27315332 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 209 301 106 55 chr9 114956256 114956455 -27314989 - L3 LINE CR1 -903 674 466 25 0 0 0 chr9 114957649 114957674 -27313770 + AT_rich Low_complexity Low_complexity 1 25 0 2333 187 70 64 chr9 114957855 114957972 -27313472 - MLT1E3 LTR MaLR -9 615 500 2098 139 133 13 chr9 114957972 114958354 -27313090 - MSTA LTR MaLR 0 428 1 2333 187 70 64 chr9 114958354 114958469 -27312975 - MLT1E3 LTR MaLR -124 500 387 1570 173 51 93 chr9 114958469 114958920 -27312524 + MSTB1 LTR MaLR 1 432 0 2333 187 70 64 chr9 114958920 114959297 -27312147 - MLT1E3 LTR MaLR -237 387 1 245 194 0 16 chr9 114959325 114959387 -27312057 + (TA)n Simple_repeat Simple_repeat 2 62 0 188 274 41 14 chr9 114960156 114960229 -27311215 - L2 LINE L2 -817 2497 2423 2337 67 3 33 chr9 114962359 114962659 -27308785 - AluSp SINE Alu 0 313 23 275 312 8 40 chr9 114963655 114963780 -27307664 + MER117 DNA MER1_type 1 121 -76 27 0 0 0 chr9 114964134 114964161 -27307283 + AT_rich Low_complexity Low_complexity 1 27 0 2355 108 3 0 chr9 114964184 114964489 -27306955 + AluSx SINE Alu 2 307 -5 310 319 112 34 chr9 114964732 114965027 -27306417 - L2 LINE L2 -596 2718 2401 5007 158 27 44 chr9 114965038 114965253 -27306191 + L1MB3 LINE L1 4698 4915 -1268 2048 138 0 7 chr9 114965253 114965550 -27305894 + AluJo SINE Alu 1 295 -17 5007 158 27 44 chr9 114965550 114966095 -27305349 + L1MB3 LINE L1 4915 5468 -715 1740 181 0 3 chr9 114966095 114966377 -27305067 + AluJb SINE Alu 2 282 -30 5007 158 27 44 chr9 114966377 114966929 -27304515 + L1MB3 LINE L1 5468 5980 -203 1882 169 0 19 chr9 114966929 114967237 -27304207 + AluJb SINE Alu 1 302 -10 5007 158 27 44 chr9 114967237 114967436 -27304008 + L1MB3 LINE L1 5980 6181 -2 234 0 0 0 chr9 114967661 114967687 -27303757 + (TG)n Simple_repeat Simple_repeat 1 26 0 951 169 7 0 chr9 114967687 114967835 -27303609 - AluJb SINE Alu -31 281 133 1571 197 8 42 chr9 114967922 114968278 -27303166 + MLT1A2 LTR MaLR 27 370 -4 321 229 69 107 chr9 114969686 114969733 -27301711 - L2 LINE L2 0 3313 3266 2443 97 0 0 chr9 114969733 114970042 -27301402 - AluSc SINE Alu 0 309 1 321 229 69 107 chr9 114970042 114970125 -27301319 - L2 LINE L2 -47 3266 3188 1655 131 0 16 chr9 114971204 114971449 -27299995 - AluSg/x SINE Alu -5 307 67 362 140 0 0 chr9 114971490 114971547 -27299897 - AluS SINE Alu -246 57 1 333 266 24 32 chr9 114971932 114972056 -27299388 + MER5A DNA MER1_type 31 160 -25 739 192 34 17 chr9 114973364 114973541 -27297903 + AluSp SINE Alu 2 181 -132 668 303 118 33 chr9 114973971 114974208 -27297236 - L2 LINE L2 0 3313 3098 1319 152 178 22 chr9 114974208 114974357 -27297087 - AluJo SINE Alu 0 312 188 267 31 0 0 chr9 114974357 114974389 -27297055 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1319 152 178 22 chr9 114974389 114974509 -27296935 - AluJo SINE Alu -124 188 1 668 303 118 33 chr9 114974509 114974727 -27296717 - L2 LINE L2 -215 3098 2819 2328 94 7 0 chr9 114974775 114975074 -27296370 - AluSx SINE Alu -11 301 1 1876 166 0 0 chr9 114975363 114975647 -27295797 + AluJo SINE Alu 1 284 -28 241 316 0 13 chr9 114975668 114975747 -27295697 + GA-rich Low_complexity Low_complexity 1 78 0 850 169 12 6 chr9 114975883 114976043 -27295401 - L1MB7 LINE L1 -19 6165 6005 2018 137 10 10 chr9 114976719 114977025 -27294419 + AluSx SINE Alu 1 306 -6 624 211 0 16 chr9 114977216 114977339 -27294105 - FLAM_A SINE Alu -12 121 1 576 142 142 0 chr9 114977688 114977794 -27293650 - FLAM_C SINE Alu -12 121 1 2080 103 14 10 chr9 114978040 114978331 -27293113 - AluSx SINE Alu -10 302 11 191 319 150 29 chr9 114978348 114978661 -27292783 + L2 LINE L2 1730 2080 -1234 899 203 18 6 chr9 114979000 114979163 -27292281 + FAM SINE Alu 2 166 -9 1032 197 30 0 chr9 114979168 114979366 -27292078 + L1MB5 LINE L1 5908 6111 -63 1163 152 6 0 chr9 114979391 114979562 -27291882 + AluSx SINE Alu 1 172 -140 2024 149 0 3 chr9 114979949 114980251 -27291193 + AluSx SINE Alu 1 301 -11 1366 176 132 19 chr9 114980688 114981006 -27290438 + L1MB4 LINE L1 5826 6179 -1 2247 145 3 12 chr9 114981710 114982048 -27289396 + MER1B DNA MER1_type 3 337 0 2361 93 0 0 chr9 114982134 114982434 -27289010 + AluSx SINE Alu 5 304 -8 411 204 91 85 chr9 114982487 114982663 -27288781 - MIR SINE MIR -46 216 40 2180 119 0 7 chr9 114982777 114983079 -27288365 + AluSx SINE Alu 1 300 -12 258 271 15 6 chr9 114983271 114983446 -27287998 + MIR SINE MIR 114 254 -8 294 313 151 26 chr9 114983463 114983655 -27287789 - MIR SINE MIR -18 244 29 2261 115 0 6 chr9 114984400 114984714 -27286730 - AluSx SINE Alu 0 312 1 496 200 30 0 chr9 114984903 114985003 -27286441 + MLT1K LTR MaLR 481 583 -5 249 283 132 63 chr9 114985554 114985759 -27285685 - L2 LINE L2 -7 3265 3047 1743 162 38 3 chr9 114985964 114986254 -27285190 + AluJb SINE Alu 1 300 -12 201 309 0 0 chr9 114987155 114987210 -27284234 - L3b LINE CR1 -263 1320 1266 201 74 0 0 chr9 114987210 114987237 -27284207 + (CCCCG)n Simple_repeat Simple_repeat 3 29 0 2358 102 0 3 chr9 114987529 114987843 -27283601 - AluSp SINE Alu 0 313 1 892 196 6 24 chr9 114988517 114988685 -27282759 - FRAM SINE Alu -1 165 1 1840 170 7 13 chr9 114988715 114989021 -27282423 + AluJo SINE Alu 1 304 -8 28 29 0 0 chr9 114989631 114989666 -27281778 + AT_rich Low_complexity Low_complexity 1 35 0 2023 101 57 17 chr9 114989677 114989973 -27281471 - AluSg SINE Alu -2 308 1 219 125 0 0 chr9 114990987 114991027 -27280417 + (TC)n Simple_repeat Simple_repeat 2 41 0 1759 131 7 54 chr9 114991150 114991448 -27279996 + AluSx SINE Alu 10 293 -19 2215 125 7 0 chr9 114991472 114991777 -27279667 + AluSx SINE Alu 1 307 -5 2532 276 128 60 chr9 114992840 114992981 -27278463 - L2 LINE L2 -33 3280 3150 1826 131 3 62 chr9 114992981 114993287 -27278157 + AluJo SINE Alu 1 288 -24 2532 276 128 60 chr9 114993287 114994978 -27276466 - L2 LINE L2 -163 3150 1311 2067 122 36 3 chr9 114995036 114995339 -27276105 - AluSq SINE Alu 0 313 1 2189 111 10 7 chr9 114995599 114995897 -27275547 + AluJo SINE Alu 1 299 -13 2125 129 6 3 chr9 114996337 114996648 -27274796 - AluJb SINE Alu 0 312 1 35 24 0 0 chr9 114996766 114996808 -27274636 + AT_rich Low_complexity Low_complexity 1 42 0 2101 141 3 0 chr9 114997141 114997438 -27274006 - AluSx SINE Alu -14 298 1 2392 103 0 0 chr9 114997942 114998252 -27273192 + AluSx SINE Alu 1 310 -2 318 327 59 28 chr9 114999088 114999667 -27271777 + L1M4 LINE L1 3554 4165 -1981 2206 194 65 65 chr9 114999810 115000249 -27271195 + MLT1D LTR MaLR 1 442 -63 1750 141 12 77 chr9 115000249 115000575 -27270869 - AluJo SINE Alu -7 305 1 2206 194 65 65 chr9 115000575 115000640 -27270804 + MLT1D LTR MaLR 441 505 0 2244 109 0 0 chr9 115000771 115001064 -27270380 - AluSx SINE Alu -19 293 1 1023 217 81 46 chr9 115001066 115001389 -27270055 - HsTC2 DNA Tc2 -94 1804 1295 800 271 95 29 chr9 115001405 115001711 -27269733 - HsTC2 DNA Tc2 -1570 328 3 370 259 54 62 chr9 115001712 115001936 -27269508 + L1MC4a LINE L1 5681 5902 -1906 30 27 0 0 chr9 115001952 115001989 -27269455 + AT_rich Low_complexity Low_complexity 1 37 0 271 325 84 0 chr9 115002561 115002644 -27268800 + L2 LINE L2 3136 3225 -47 901 264 39 24 chr9 115002865 115003119 -27268325 - MIR SINE MIR -2 260 3 188 286 32 0 chr9 115003216 115003279 -27268165 - L2 LINE L2 -291 2981 2917 504 111 0 0 chr9 115003407 115003504 -27267940 + AluJ/FRAM SINE Alu 221 317 0 1768 135 36 46 chr9 115003558 115003862 -27267582 + AluJo SINE Alu 1 301 -11 528 122 0 0 chr9 115004038 115004120 -27267324 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 210 37 0 0 chr9 115004359 115004386 -27267058 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 238 87 43 0 chr9 115004510 115004556 -27266888 + (TA)n Simple_repeat Simple_repeat 1 48 0 2107 114 3 32 chr9 115004709 115005017 -27266427 - AluSx SINE Alu -13 299 1 887 290 87 28 chr9 115005168 115005778 -27265666 + HAL1b LINE L1 1 646 -702 272 344 26 7 chr9 115005779 115005933 -27265511 + HAL1b LINE L1 668 824 -524 1504 158 46 46 chr9 115006040 115006348 -27265096 + AluJo SINE Alu 1 308 0 1717 186 0 3 chr9 115006360 115006672 -27264772 + AluJo SINE Alu 1 311 0 231 271 30 23 chr9 115006882 115007015 -27264429 + L1M4 LINE L1 2309 2442 -3704 2363 92 26 0 chr9 115007074 115007378 -27264066 + AluSx SINE Alu 1 312 0 518 183 24 9 chr9 115007419 115007579 -27263865 - MER58B DNA MER1_type -11 330 1 669 298 62 38 chr9 115007587 115008227 -27263217 + L1M4 LINE L1 3162 3817 -2329 25 65 0 0 chr9 115008249 115008295 -27263149 + AT_rich Low_complexity Low_complexity 1 46 0 691 241 60 12 chr9 115011571 115011737 -27259707 + MER5A DNA MER1_type 9 182 -7 491 254 33 8 chr9 115013778 115013900 -27257544 + L2 LINE L2 2834 2958 -355 1867 168 13 0 chr9 115014071 115014374 -27257070 - AluJb SINE Alu -5 307 1 2022 133 7 7 chr9 115014579 115014873 -27256571 + AluSx SINE Alu 1 294 -18 2398 82 3 3 chr9 115014932 115015235 -27256209 - AluSq SINE Alu -10 303 1 202 270 16 16 chr9 115015886 115015949 -27255495 - MIR3 SINE MIR -142 66 4 390 21 0 0 chr9 115016552 115016599 -27254845 + (TC)n Simple_repeat Simple_repeat 2 48 0 1659 158 50 18 chr9 115016599 115016877 -27254567 - AluJo SINE Alu -25 287 1 351 333 74 39 chr9 115017273 115017558 -27253886 + L2 LINE L2 552 846 -2468 2503 70 0 0 chr9 115017721 115018022 -27253422 - AluY SINE Alu -10 301 1 2133 125 3 0 chr9 115018087 115018384 -27253060 + AluSx SINE Alu 1 298 -14 297 0 0 0 chr9 115018394 115018427 -27253017 + (CA)n Simple_repeat Simple_repeat 2 34 0 2020 144 0 3 chr9 115018615 115018914 -27252530 + AluSx SINE Alu 1 298 -14 201 244 141 39 chr9 115018926 115019004 -27252440 - L2 LINE L2 -16 3256 3171 2329 96 3 3 chr9 115019100 115019412 -27252032 + AluSp SINE Alu 1 312 -1 302 295 105 9 chr9 115019949 115020054 -27251390 + MIR SINE MIR 32 146 -62 188 139 139 0 chr9 115021474 115021510 -27249934 - MER5A DNA MER1_type 0 189 149 1501 168 89 11 chr9 115021570 115021850 -27249594 - AluJb SINE Alu -6 306 5 21 36 0 0 chr9 115021884 115021912 -27249532 + AT_rich Low_complexity Low_complexity 1 28 0 267 31 0 0 chr9 115021928 115021960 -27249484 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2053 136 0 0 chr9 115022973 115023259 -27248185 + AluSx SINE Alu 1 286 -26 310 279 98 33 chr9 115023320 115023442 -27248002 + L2 LINE L2 3184 3313 0 424 296 91 66 chr9 115023456 115023521 -27247923 + HAL1b LINE L1 330 392 -956 1821 139 66 0 chr9 115023521 115023809 -27247635 - AluSx SINE Alu -5 307 1 424 296 91 66 chr9 115023809 115024139 -27247305 + HAL1b LINE L1 392 735 -613 1846 151 34 0 chr9 115024521 115024819 -27246625 + AluJb SINE Alu 3 310 -2 1015 172 5 0 chr9 115024823 115025009 -27246435 + AluSg/x SINE Alu 121 307 -5 1997 152 13 3 chr9 115026032 115026373 -27245071 + AluJb SINE Alu 1 344 0 341 314 85 41 chr9 115026630 115026901 -27244543 + L1M4 LINE L1 3392 3674 -2472 220 366 10 20 chr9 115027081 115027182 -27244262 - MIR SINE MIR -89 119 20 2100 142 0 0 chr9 115027603 115027899 -27243545 + AluSx SINE Alu 1 296 -16 1692 152 48 28 chr9 115027934 115028223 -27243221 - AluJo SINE Alu -13 299 5 2057 128 0 26 chr9 115028518 115028830 -27242614 - AluSx SINE Alu -8 304 1 2300 106 6 3 chr9 115029889 115030200 -27241244 + AluSx SINE Alu 1 312 0 2122 129 0 0 chr9 115031186 115031495 -27239949 + AluSx SINE Alu 1 309 0 1018 203 0 48 chr9 115031507 115031734 -27239710 + L1M4 LINE L1 4190 4405 -1741 2278 122 0 0 chr9 115031737 115032049 -27239395 + AluSx SINE Alu 1 312 0 2162 136 0 7 chr9 115033065 115033375 -27238069 + AluSx SINE Alu 5 312 0 327 291 108 19 chr9 115033894 115034052 -27237392 - MARNA DNA Mariner -18 568 397 2066 147 0 0 chr9 115034394 115034693 -27236751 + AluSx SINE Alu 1 299 -13 215 286 27 18 chr9 115035049 115035161 -27236283 + (TATG)n Simple_repeat Simple_repeat 4 116 0 267 277 133 0 chr9 115035211 115035294 -27236150 + L2 LINE L2 3144 3237 -35 463 338 26 21 chr9 115035335 115035569 -27235875 - L2 LINE L2 -1319 1995 1761 579 316 25 28 chr9 115035621 115035906 -27235538 - MARNA DNA Mariner -251 335 52 2311 94 0 0 chr9 115036024 115036321 -27235123 - AluSx SINE Alu -15 297 1 361 200 123 39 chr9 115036415 115036545 -27234899 - MER113 DNA MER1_type? -380 141 1 575 253 20 20 chr9 115036582 115036728 -27234716 + MIR SINE MIR 46 191 -71 1466 147 20 20 chr9 115037604 115037855 -27233589 + AluJo SINE Alu 49 299 -13 253 204 20 119 chr9 115038983 115039084 -27232360 + L2 LINE L2 3134 3312 -1 365 231 81 66 chr9 115039530 115039711 -27231733 - MIR SINE MIR -46 216 36 1777 154 25 7 chr9 115039711 115039996 -27231448 - AluJo SINE Alu -22 290 1 981 127 8 0 chr9 115039996 115040130 -27231314 - AluSq/x SINE Alu -178 135 1 2838 121 53 51 chr9 115040146 115040632 -27230812 + L1MB2 LINE L1 5623 6107 -64 2483 155 34 2 chr9 115040632 115041045 -27230399 - MSTB LTR MaLR 0 426 1 2154 111 0 26 chr9 115041052 115041358 -27230086 + AluSx SINE Alu 1 298 -14 2838 121 53 51 chr9 115041358 115041410 -27230034 + L1MB2 LINE L1 6112 6170 -1 29 47 0 0 chr9 115042866 115042909 -27228535 + AT_rich Low_complexity Low_complexity 1 43 0 194 274 83 60 chr9 115044105 115044189 -27227255 + L3 LINE CR1 1431 1516 -61 341 238 28 84 chr9 115044197 115044340 -27227104 - MER5B DNA MER1_type -3 175 41 2174 117 3 7 chr9 115044624 115044924 -27226520 + AluSx SINE Alu 1 299 -13 346 240 194 57 chr9 115045125 115045300 -27226144 - L2 LINE L2 -1 3312 3114 1389 179 0 4 chr9 115045362 115045596 -27225848 - AluJo SINE Alu -37 275 43 2213 125 6 3 chr9 115045617 115045928 -27225516 - AluSx SINE Alu 0 312 1 1759 121 4 4 chr9 115045935 115046175 -27225269 - AluSx SINE Alu -19 293 54 1012 332 36 27 chr9 115046184 115046782 -27224662 - L2 LINE L2 -244 3069 2463 1821 170 0 3 chr9 115046850 115047139 -27224305 - AluJb SINE Alu -16 296 9 2004 147 7 0 chr9 115047627 115047920 -27223524 + AluSx SINE Alu 1 295 -17 206 260 26 0 chr9 115047921 115047998 -27223446 + GA-rich Low_complexity Low_complexity 1 79 0 785 79 42 18 chr9 115048012 115048177 -27223267 + GA-rich Low_complexity Low_complexity 1 169 0 1710 129 55 48 chr9 115048276 115048586 -27222858 + AluJb SINE Alu 1 312 0 277 284 71 57 chr9 115048587 115048728 -27222716 - MIR SINE MIR -92 170 28 6021 93 15 53 chr9 115050516 115050530 -27220914 + L1PA16 LINE L1 4693 4706 -1460 1477 156 80 42 chr9 115050530 115050818 -27220626 + AluJo SINE Alu 1 299 -13 6021 93 15 53 chr9 115050818 115052312 -27219132 + L1PA16 LINE L1 4706 6166 0 2164 107 17 0 chr9 115052320 115052620 -27218824 + AluSq SINE Alu 1 305 -8 416 261 122 30 chr9 115053315 115053510 -27217934 - MIR SINE MIR -17 245 40 1813 176 3 19 chr9 115053755 115054068 -27217376 - AluJo SINE Alu -4 308 1 415 265 14 61 chr9 115054115 115054262 -27217182 - MER117 DNA MER1_type -4 193 54 243 0 0 0 chr9 115054798 115054825 -27216619 + (GGA)n Simple_repeat Simple_repeat 1 27 0 643 144 31 0 chr9 115055332 115055429 -27216015 + U6 snRNA snRNA 2 101 -6 432 222 116 114 chr9 115055445 115055475 -27215969 - L1ME4a LINE L1 -51 6070 6042 2209 96 3 7 chr9 115055475 115055767 -27215677 + AluSx SINE Alu 1 291 -21 327 104 0 0 chr9 115055767 115055815 -27215629 + (TA)n Simple_repeat Simple_repeat 2 49 0 432 222 116 114 chr9 115055815 115055995 -27215449 - L1ME4a LINE L1 -79 6042 5855 2154 101 35 3 chr9 115055995 115056282 -27215162 - AluSg SINE Alu -14 296 1 432 222 116 114 chr9 115056282 115056430 -27215014 - L1ME4a LINE L1 -266 5855 5709 311 284 78 64 chr9 115056486 115056971 -27214473 + L1M4 LINE L1 3370 3861 -2285 1043 152 4 6 chr9 115056986 115057230 -27214214 - AluJb SINE Alu -18 294 2 1677 146 94 17 chr9 115057478 115057615 -27213829 + AluJb SINE Alu 1 126 -186 2796 22 0 0 chr9 115057615 115057926 -27213518 + AluYb8 SINE Alu 1 311 -7 1677 146 94 17 chr9 115057926 115058076 -27213368 + AluJb SINE Alu 126 310 -2 325 269 86 0 chr9 115058163 115058256 -27213188 + MIR SINE MIR 2 102 -160 3010 127 33 80 chr9 115058256 115058854 -27212590 - MER7C DNA MER2_type 0 602 33 193 243 0 0 chr9 115058855 115058892 -27212552 + MIR SINE MIR 198 234 -28 2036 139 0 0 chr9 115058929 115059216 -27212228 + AluSx SINE Alu 1 287 -25 301 92 120 0 chr9 115059217 115059359 -27212085 + (TA)n Simple_repeat Simple_repeat 1 159 0 231 211 0 0 chr9 115059403 115059455 -27211989 - LTR66 LTR ERVL -171 439 388 307 329 68 28 chr9 115059494 115059746 -27211698 + L1M4 LINE L1 4023 4284 -1862 2223 110 16 7 chr9 115060506 115060815 -27210629 - AluSx SINE Alu 0 312 1 200 233 0 0 chr9 115061173 115061216 -27210228 + A-rich Low_complexity Low_complexity 1 43 0 198 107 0 0 chr9 115061358 115061386 -27210058 + L2 LINE L2 3232 3259 -13 2286 113 3 0 chr9 115061492 115061793 -27209651 + AluSx SINE Alu 1 302 -10 576 142 142 0 chr9 115062039 115062145 -27209299 + FLAM_C SINE Alu 1 121 -12 624 211 0 16 chr9 115062494 115062617 -27208827 + FLAM_A SINE Alu 1 121 -12 2018 137 10 10 chr9 115062808 115063114 -27208330 - AluSx SINE Alu -6 306 1 850 169 12 6 chr9 115063790 115063950 -27207494 + L1MB7 LINE L1 6005 6165 -19 241 316 0 13 chr9 115064086 115064165 -27207279 + CT-rich Low_complexity Low_complexity 1 78 0 1876 166 0 0 chr9 115064186 115064470 -27206974 - AluJo SINE Alu -28 284 1 1834 93 4 48 chr9 115064759 115065028 -27206416 + AluSc SINE Alu 1 257 -52 2256 101 0 3 chr9 115065028 115065324 -27206120 + AluSc SINE Alu 5 300 -9 2085 126 7 3 chr9 115066160 115066453 -27204991 + AluSx SINE Alu 1 294 -18 263 264 14 40 chr9 115066604 115066752 -27204692 - L1MC4 LINE L1 -190 7852 7709 664 256 13 6 chr9 115067643 115067799 -27203645 - MER58A DNA MER1_type 0 160 4 24 0 0 0 chr9 115068038 115068062 -27203382 + AT_rich Low_complexity Low_complexity 1 24 0 3718 114 16 72 chr9 115068062 115068472 -27202972 - Tigger3b DNA MER2_type -1797 1231 800 1715 157 0 51 chr9 115068472 115068785 -27202659 - AluJo SINE Alu -15 297 1 3718 114 16 72 chr9 115068785 115068849 -27202595 - Tigger3b DNA MER2_type -2228 800 734 2273 109 3 0 chr9 115068849 115069143 -27202301 + AluSq SINE Alu 1 295 -18 3718 114 16 72 chr9 115069143 115069154 -27202290 - Tigger3b DNA MER2_type -2294 734 724 2442 76 0 13 chr9 115069154 115069290 -27202154 + AluSx SINE Alu 1 137 -175 2404 84 13 0 chr9 115069290 115069588 -27201856 + AluSp SINE Alu 1 302 -11 2442 76 0 13 chr9 115069588 115069753 -27201691 + AluSx SINE Alu 137 298 -14 3718 114 16 72 chr9 115069753 115069927 -27201517 - Tigger3b DNA MER2_type -2304 724 606 1612 183 0 40 chr9 115069927 115070249 -27201195 - AluJo SINE Alu -3 309 1 3718 114 16 72 chr9 115070249 115070267 -27201177 - Tigger3b DNA MER2_type -2422 606 589 1090 166 0 16 chr9 115070274 115070461 -27200983 - FRAM SINE Alu 0 176 1 3498 111 20 76 chr9 115070478 115070518 -27200926 - Tigger3b DNA MER2_type -2458 570 529 1819 185 0 3 chr9 115070518 115070815 -27200629 + AluJb SINE Alu 1 296 -16 3498 111 20 76 chr9 115070815 115071147 -27200297 - Tigger3b DNA MER2_type -2499 529 242 2422 93 0 0 chr9 115071147 115071448 -27199996 - AluSq SINE Alu -12 301 1 3498 111 20 76 chr9 115071448 115071678 -27199766 - Tigger3b DNA MER2_type -2786 242 1 1850 133 3 75 chr9 115071741 115072073 -27199371 + AluJb SINE Alu 1 308 -4 2325 92 7 0 chr9 115072503 115072797 -27198647 + AluSx SINE Alu 1 296 -16 381 145 0 0 chr9 115073151 115073213 -27198231 - Alu SINE Alu 0 302 241 865 159 0 0 chr9 115073214 115073340 -27198104 + FLAM_C SINE Alu 1 126 -17 636 202 8 12 chr9 115073340 115073588 -27197856 + GA-rich Low_complexity Low_complexity 1 247 0 519 133 20 31 chr9 115073612 115073710 -27197734 + AluJ/FRAM SINE Alu 215 311 -1 2329 92 3 0 chr9 115073716 115074010 -27197434 + AluSg SINE Alu 1 295 -15 1181 170 0 19 chr9 115074012 115074224 -27197220 - AluJo SINE Alu -83 229 22 2000 167 0 0 chr9 115075347 115075658 -27195786 - AluJb SINE Alu -1 311 1 243 350 20 0 chr9 115075818 115075918 -27195526 + L2 LINE L2 2949 3050 -222 1859 171 0 3 chr9 115075928 115076226 -27195218 - AluJb SINE Alu -15 297 1 324 293 40 59 chr9 115077006 115077228 -27194216 + L1M4 LINE L1 2701 2918 -3228 201 340 0 0 chr9 115077531 115077628 -27193816 + A-rich Low_complexity Low_complexity 1 97 0 2270 113 0 0 chr9 115077796 115078097 -27193347 + AluSx SINE Alu 1 301 -11 600 150 142 33 chr9 115078116 115078236 -27193208 + FLAM_C SINE Alu 1 133 0 2193 117 0 10 chr9 115078629 115078928 -27192516 + AluSx SINE Alu 1 296 -16 2271 110 7 0 chr9 115079075 115079374 -27192070 + AluSx SINE Alu 1 301 -11 833 133 51 19 chr9 115079401 115079559 -27191885 + L1MB3 LINE L1 6021 6183 0 308 146 37 49 chr9 115079581 115079663 -27191781 - L1MB7 LINE L1 -2 6182 6102 2819 144 49 0 chr9 115080148 115080593 -27190851 + LTR24 LTR ERV1 1 467 0 1078 160 160 62 chr9 115080639 115080681 -27190763 + AluJo SINE Alu 1 37 -265 1501 150 0 70 chr9 115080681 115080968 -27190476 - AluJb SINE Alu -12 300 34 1078 160 160 62 chr9 115080968 115081200 -27190244 + AluJo SINE Alu 37 302 0 2219 118 3 10 chr9 115081251 115081565 -27189879 + AluSx SINE Alu 1 312 0 482 306 12 19 chr9 115081804 115081964 -27189480 + MIR3 SINE MIR 20 178 -30 802 171 8 0 chr9 115081971 115082100 -27189344 + FRAM SINE Alu 37 166 -10 290 151 0 0 chr9 115082100 115082153 -27189291 + L1MA3 LINE L1 6253 6305 0 2268 110 0 3 chr9 115082197 115082506 -27188938 + AluY SINE Alu 1 308 -3 272 213 0 0 chr9 115082549 115082610 -27188834 - MER5A DNA MER1_type -84 105 45 1298 131 21 34 chr9 115082699 115082936 -27188508 - L1MA2 LINE L1 -1 6303 6070 2126 143 0 0 chr9 115082942 115083243 -27188201 - AluSx SINE Alu -10 302 2 201 147 29 0 chr9 115083316 115083350 -27188094 + GA-rich Low_complexity Low_complexity 2 36 0 1103 83 11 17 chr9 115083351 115083531 -27187913 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 391 254 0 0 chr9 115083836 115083907 -27187537 - MER81 DNA DNA -38 76 6 407 194 122 0 chr9 115083912 115084010 -27187434 - MER5A DNA MER1_type -35 154 45 1692 156 31 24 chr9 115084648 115084937 -27186507 - AluJo SINE Alu -21 291 1 660 168 58 119 chr9 115085140 115085291 -27186153 + MIR SINE MIR 46 180 -82 2190 141 8 25 chr9 115085291 115085652 -27185792 - THE1A LTR MaLR 0 355 1 660 168 58 119 chr9 115085652 115085726 -27185718 + MIR SINE MIR 180 257 -5 710 190 8 0 chr9 115086208 115086329 -27185115 + FLAM_C SINE Alu 1 122 -11 199 271 90 49 chr9 115086583 115086727 -27184717 - L3 LINE CR1 -8 1569 1420 835 74 9 0 chr9 115086821 115086929 -27184515 + HY1 scRNA scRNA 1 109 -3 219 150 0 0 chr9 115086929 115086969 -27184475 + (A)n Simple_repeat Simple_repeat 1 40 0 2337 102 0 0 chr9 115087211 115087505 -27183939 - AluSp SINE Alu -14 299 6 1605 166 77 63 chr9 115088191 115088246 -27183198 + MER89 LTR ERV1 1 54 -505 234 0 0 0 chr9 115088246 115088272 -27183172 + (GA)n Simple_repeat Simple_repeat 2 27 0 2085 106 0 11 chr9 115088273 115088548 -27182896 - AluSx SINE Alu -40 272 1 1605 166 77 63 chr9 115088548 115088939 -27182505 + MER89 LTR ERV1 53 554 -5 2148 114 10 13 chr9 115089449 115089747 -27181697 + AluSx SINE Alu 1 297 -15 24 91 0 0 chr9 115092522 115092588 -27178856 + GC_rich Low_complexity Low_complexity 1 66 0 26 98 0 0 chr9 115092621 115092703 -27178741 + GC_rich Low_complexity Low_complexity 1 82 0 185 282 0 0 chr9 115093323 115093362 -27178082 + T-rich Low_complexity Low_complexity 1 39 0 1323 58 0 11 chr9 115093520 115093694 -27177750 - Tigger3(Golem) DNA MER2_type -235 2794 2623 955 145 53 7 chr9 115093744 115093896 -27177548 - Tigger3(Golem) DNA MER2_type -2838 191 33 193 243 0 0 chr9 115093897 115093934 -27177510 + MIR SINE MIR 198 234 -28 1898 147 7 0 chr9 115093971 115094256 -27177188 + AluSx SINE Alu 1 287 -25 301 92 120 0 chr9 115094257 115094399 -27177045 + (TA)n Simple_repeat Simple_repeat 2 160 0 231 211 0 0 chr9 115094443 115094495 -27176949 - LTR66 LTR ERVL -171 439 388 307 329 68 28 chr9 115094534 115094786 -27176658 + L1M4 LINE L1 4023 4284 -1862 2076 154 0 19 chr9 115095541 115095859 -27175585 - AluSx SINE Alu 0 312 1 2246 99 3 0 chr9 115096482 115096774 -27174670 - AluSx SINE Alu -17 295 3 312 27 0 0 chr9 115096896 115096933 -27174511 + (TG)n Simple_repeat Simple_repeat 2 38 0 2233 113 0 0 chr9 115096948 115097241 -27174203 - AluSx SINE Alu -19 293 1 1451 144 0 5 chr9 115097371 115097579 -27173865 - AluJb SINE Alu -21 291 85 224 213 16 16 chr9 115098062 115098123 -27173321 + MIR SINE MIR 162 222 -40 2270 117 0 0 chr9 115098334 115098633 -27172811 + AluSx SINE Alu 1 299 -13 2045 112 0 0 chr9 115099445 115099722 -27171722 + AluSx SINE Alu 1 277 -35 672 98 0 0 chr9 115099722 115099824 -27171620 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 664 216 0 15 chr9 115100120 115100254 -27171190 + FLAM_A SINE Alu 1 132 -1 1574 153 56 31 chr9 115100292 115100579 -27170865 - AluJo SINE Alu -18 294 1 283 228 13 25 chr9 115100866 115100945 -27170499 + LTR37B LTR ERV1 6 83 -385 491 222 71 75 chr9 115101087 115101353 -27170091 + LTR37A LTR ERV1 199 463 -5 1702 167 23 36 chr9 115101719 115102024 -27169420 - AluJo SINE Alu -11 301 1 759 128 24 8 chr9 115102024 115102149 -27169295 + L1MB3 LINE L1 6005 6131 -52 1320 120 5 10 chr9 115102149 115102362 -27169082 - AluSq SINE Alu 0 306 95 1680 59 5 0 chr9 115102968 115103172 -27168272 + AluY SINE Alu 97 301 -10 770 146 0 29 chr9 115103708 115103845 -27167599 - FRAM SINE Alu -4 172 40 342 0 0 0 chr9 115104783 115104821 -27166623 + (CA)n Simple_repeat Simple_repeat 1 38 0 585 285 71 77 chr9 115105173 115105331 -27166113 - HAL1 LINE L1 -738 1769 1612 2209 125 0 0 chr9 115105331 115105627 -27165817 - AluSx SINE Alu -11 301 6 585 285 71 77 chr9 115105627 115106002 -27165442 - HAL1 LINE L1 -895 1612 1239 596 207 33 0 chr9 115106012 115106133 -27165311 - FLAM_C SINE Alu -7 126 2 1904 150 64 22 chr9 115106560 115106907 -27164537 + THE1C LTR MaLR 1 365 -10 2251 116 0 0 chr9 115106907 115107209 -27164235 + AluSg SINE Alu 1 302 -8 1904 150 64 22 chr9 115107209 115107221 -27164223 + THE1C LTR MaLR 365 375 0 1996 97 0 34 chr9 115107513 115107812 -27163632 + AluSq SINE Alu 25 314 0 2404 251 63 31 chr9 115108179 115108922 -27162522 - L1ME3 LINE L1 -6 6156 5438 2397 86 7 0 chr9 115108922 115109225 -27162219 - AluSp SINE Alu -8 305 1 2404 251 63 31 chr9 115109225 115109940 -27161504 - L1ME3 LINE L1 -724 5438 4653 969 106 0 0 chr9 115109964 115110096 -27161348 + AluSg/x SINE Alu 179 310 -2 270 343 79 7 chr9 115110225 115110365 -27161079 + L2 LINE L2 3122 3271 -1 2266 113 0 3 chr9 115110622 115110932 -27160512 + AluSq SINE Alu 1 309 -4 348 284 158 68 chr9 115111310 115111824 -27159620 - MLT1K LTR MaLR -18 570 11 2278 121 3 6 chr9 115111882 115112195 -27159249 - AluSx SINE Alu 0 312 1 534 96 14 0 chr9 115112270 115112343 -27159101 - MADE1 DNA Mariner -6 74 1 191 337 87 0 chr9 115112432 115112524 -27158920 - L3 LINE CR1 -488 1089 990 375 60 0 0 chr9 115112977 115113027 -27158417 + (TC)n Simple_repeat Simple_repeat 1 50 0 1620 185 3 20 chr9 115113027 115113329 -27158115 - AluJb SINE Alu -15 297 1 7027 61 13 0 chr9 115113374 115114594 -27156850 - L1PA7 LINE L1 -20 6134 4901 594 96 0 12 chr9 115114596 115114679 -27156765 - L1PA7 LINE L1 -2358 3788 3707 2263 103 0 0 chr9 115114687 115114978 -27156466 + AluSx SINE Alu 1 291 -21 1065 136 0 0 chr9 115115160 115115307 -27156137 + AluSg/x SINE Alu 155 301 -11 1598 156 99 16 chr9 115115308 115115622 -27155822 - THE1C LTR MaLR -35 340 1 818 127 0 90 chr9 115115622 115115788 -27155656 + MER53 DNA DNA 37 187 -2 712 318 59 0 chr9 115116028 115116264 -27155180 - MIR SINE MIR -7 255 6 382 252 46 25 chr9 115116643 115116787 -27154657 + MLT1J2 LTR MaLR 67 209 -200 1764 173 23 7 chr9 115117005 115117312 -27154132 - AluJb SINE Alu 0 312 1 1586 137 4 4 chr9 115117972 115118225 -27153219 + AluSx SINE Alu 50 302 0 1711 149 45 10 chr9 115118968 115119256 -27152188 + AluJb SINE Alu 1 298 -14 2201 118 0 0 chr9 115119256 115119545 -27151899 + AluSx SINE Alu 24 312 0 25 51 0 0 chr9 115119649 115119688 -27151756 + AT_rich Low_complexity Low_complexity 1 39 0 2109 138 0 0 chr9 115120299 115120589 -27150855 + AluJb SINE Alu 6 295 -17 874 244 7 81 chr9 115120813 115120963 -27150481 - MIR SINE MIR 0 262 102 1949 140 51 61 chr9 115120963 115121091 -27150353 + MLT1B LTR MaLR 1 129 -261 2216 115 0 13 chr9 115121091 115121395 -27150049 + AluSx SINE Alu 1 300 -12 1949 140 51 61 chr9 115121395 115121660 -27149784 + MLT1B LTR MaLR 129 390 0 874 244 7 81 chr9 115121660 115121698 -27149746 - MIR SINE MIR -160 102 63 2483 83 0 3 chr9 115121698 115122000 -27149444 - AluSc SINE Alu -8 301 1 874 244 7 81 chr9 115122000 115122093 -27149351 - MIR SINE MIR -199 63 1 1290 159 72 59 chr9 115122113 115122433 -27149011 - MER33 DNA MER1_type 0 324 1 2316 107 3 0 chr9 115122629 115122937 -27148507 - AluSx SINE Alu -3 309 1 639 285 71 51 chr9 115122938 115123289 -27148155 + L2 LINE L2 2910 3267 -5 246 335 42 18 chr9 115123654 115123821 -27147623 - L2 LINE L2 -192 3080 2910 2460 83 0 6 chr9 115123822 115124134 -27147310 + AluY SINE Alu 1 310 -1 747 268 89 24 chr9 115124221 115124601 -27146843 + MLT1J LTR MaLR 100 582 -6 392 186 136 25 chr9 115125282 115125310 -27146134 - L1ME4a LINE L1 0 6121 6097 1715 181 3 3 chr9 115125310 115125602 -27145842 + AluJb SINE Alu 1 292 -20 392 186 136 25 chr9 115125602 115125691 -27145753 - L1ME4a LINE L1 -24 6097 5991 783 227 38 11 chr9 115125707 115125892 -27145552 - MLT1L LTR MaLR -4 611 422 387 286 40 16 chr9 115125987 115126113 -27145331 - MLT1L LTR MaLR -400 215 87 2069 138 0 3 chr9 115126354 115126652 -27144792 - AluJb SINE Alu -15 297 1 5927 157 64 11 chr9 115126653 115128260 -27143184 - L1PA16 LINE L1 0 6166 4645 2117 133 3 0 chr9 115128260 115128562 -27142882 - AluSx SINE Alu -9 303 1 5927 157 64 11 chr9 115128562 115128631 -27142813 - L1PA16 LINE L1 -1521 4645 4581 441 0 0 0 chr9 115128631 115128680 -27142764 + (TG)n Simple_repeat Simple_repeat 2 50 0 5927 157 64 11 chr9 115128680 115129120 -27142324 - L1PA16 LINE L1 -1585 4581 3938 1484 144 9 4 chr9 115129273 115129502 -27141942 - MER2 DNA MER2_type 0 345 116 2106 115 0 51 chr9 115129694 115130006 -27141438 + AluSx SINE Alu 1 296 -16 811 185 7 0 chr9 115130102 115130237 -27141207 - MER2 DNA MER2_type -209 136 1 260 194 15 15 chr9 115130708 115130775 -27140669 - L1M4 LINE L1 -3949 3008 2942 1702 195 47 14 chr9 115130779 115131123 -27140321 - MER82 DNA MER2_type -3 650 296 3951 250 74 13 chr9 115131142 115132579 -27138865 - L1M4 LINE L1 -4652 2307 959 1496 189 121 61 chr9 115132579 115132666 -27138778 - MER31B LTR ERV1 0 466 386 2269 106 3 19 chr9 115132666 115132977 -27138467 + AluSx SINE Alu 1 306 -6 1496 189 121 61 chr9 115132977 115133282 -27138162 - MER31B LTR ERV1 -80 386 43 2320 89 3 13 chr9 115133282 115133585 -27137859 + AluY SINE Alu 1 300 -11 1496 189 121 61 chr9 115133585 115133631 -27137813 - MER31B LTR ERV1 -423 43 1 3951 250 74 13 chr9 115133631 115133781 -27137663 - L1M4 LINE L1 -6000 959 426 2011 149 40 37 chr9 115133881 115134257 -27137187 + MLT2B3 LTR ERVL 178 554 0 1863 163 22 45 chr9 115134257 115134614 -27136830 + MLT1B LTR MaLR 42 390 0 2239 107 7 7 chr9 115135315 115135614 -27135830 - AluSx SINE Alu -13 299 1 227 167 0 24 chr9 115135986 115136028 -27135416 - 5S rRNA rRNA -80 41 1 1997 127 3 27 chr9 115136387 115136679 -27134765 + AluSx SINE Alu 1 285 -27 448 182 242 0 chr9 115136728 115136827 -27134617 + FLAM_C SINE Alu 2 124 -19 971 209 76 4 chr9 115137099 115137362 -27134082 + L1MC5 LINE L1 7026 7307 -654 346 158 232 0 chr9 115137463 115137545 -27133899 + L1MC5 LINE L1 7452 7552 -409 287 133 67 17 chr9 115137547 115137607 -27133837 + L1MC5 LINE L1 7723 7785 -176 888 138 92 0 chr9 115137607 115137759 -27133685 + AluSg/x SINE Alu 133 298 -11 277 191 229 9 chr9 115137762 115137867 -27133577 + L1MC5 LINE L1 7772 7899 -62 2234 106 7 3 chr9 115137884 115138177 -27133267 + AluSx SINE Alu 1 294 -18 1647 175 14 7 chr9 115138260 115138551 -27132893 + AluJb SINE Alu 1 293 -19 432 240 109 14 chr9 115138940 115139160 -27132284 - L1ME3A LINE L1 -121 6049 5779 313 228 132 9 chr9 115139130 115139244 -27132200 - L1M4 LINE L1 -3705 2441 2314 * 1230 179 119 35 chr9 115139452 115139737 -27131707 + AluJo SINE Alu 1 309 -3 190 224 118 53 chr9 115140408 115140484 -27130960 + L2 LINE L2 3191 3271 -1 1807 174 34 21 chr9 115140488 115140873 -27130571 + MLT1B LTR MaLR 1 390 0 548 101 0 34 chr9 115143909 115143998 -27127446 + AluJ/FLAM SINE Alu 1 86 -226 195 42 0 0 chr9 115144002 115144026 -27127418 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 237 83 0 0 chr9 115144892 115144928 -27126516 + (CA)n Simple_repeat Simple_repeat 2 37 0 851 124 5 124 chr9 115145534 115145727 -27125717 - FAM SINE Alu -5 170 1 1784 248 91 16 chr9 115148259 115148763 -27122681 + MLT1F LTR MaLR 1 542 0 377 250 68 145 chr9 115148825 115149002 -27122442 + MIR SINE MIR 1 155 -107 1016 176 0 41 chr9 115149002 115149223 -27122221 + L1MB3 LINE L1 5965 6176 -7 377 250 68 145 chr9 115149223 115149293 -27122151 + MIR SINE MIR 155 229 -33 1599 158 54 7 chr9 115149400 115149678 -27121766 + AluJb SINE Alu 1 291 -21 24 0 0 0 chr9 115149678 115149702 -27121742 + AT_rich Low_complexity Low_complexity 1 24 0 1220 202 73 0 chr9 115150214 115150495 -27120949 - MER58B DNA MER1_type 0 341 36 211 261 0 0 chr9 115151496 115151542 -27119902 + L2 LINE L2 3219 3264 -8 22 0 0 0 chr9 115151974 115151996 -27119448 + AT_rich Low_complexity Low_complexity 1 22 0 522 312 65 50 chr9 115152230 115152627 -27118817 + L2 LINE L2 2260 2662 -652 317 296 20 26 chr9 115152627 115152779 -27118665 + Charlie7 DNA MER1_type 2 152 -2460 2238 113 0 3 chr9 115152907 115153207 -27118237 + AluSx SINE Alu 1 299 -13 704 136 85 8 chr9 115153369 115153487 -27117957 - FLAM_C SINE Alu -16 127 1 229 254 116 14 chr9 115153490 115153628 -27117816 + Charlie7 DNA MER1_type 1758 1909 -703 616 191 42 30 chr9 115153628 115153796 -27117648 + L1MB8 LINE L1 6009 6178 0 963 170 13 0 chr9 115153801 115153954 -27117490 + FRAM SINE Alu 1 151 -25 908 242 144 12 chr9 115153958 115154438 -27117006 + Charlie7 DNA MER1_type 1914 2456 -156 266 296 64 57 chr9 115154463 115154727 -27116717 + L2 LINE L2 2698 2963 -351 320 281 37 0 chr9 115154870 115154952 -27116492 + L2 LINE L2 3228 3312 -1 1481 191 18 21 chr9 115155247 115155529 -27115915 + AluJo SINE Alu 1 281 -31 993 43 35 0 chr9 115155529 115155670 -27115774 + (GAGAA)n Simple_repeat Simple_repeat 3 148 0 23 0 0 0 chr9 115156640 115156663 -27114781 + AT_rich Low_complexity Low_complexity 1 23 0 396 0 0 0 chr9 115156898 115156942 -27114502 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr9 115157006 115157032 -27114412 + AT_rich Low_complexity Low_complexity 1 26 0 1943 156 3 3 chr9 115157275 115157576 -27113868 + AluSx SINE Alu 1 301 -11 182 407 83 13 chr9 115159148 115159603 -27111841 - L2 LINE L2 -896 2418 1932 34 55 0 0 chr9 115159745 115159800 -27111644 + AT_rich Low_complexity Low_complexity 1 55 0 294 290 130 0 chr9 115159937 115160037 -27111407 - L2 LINE L2 -4 3309 3197 241 229 24 36 chr9 115161094 115161177 -27110267 + L1ME LINE L1 5697 5778 -343 488 293 119 42 chr9 115161483 115162603 -27108841 + L1MEd LINE L1 448 1698 -4612 227 291 30 108 chr9 115162870 115163073 -27108371 - L2 LINE L2 -12 3301 3115 1578 183 4 7 chr9 115163073 115163347 -27108097 + AluJo SINE Alu 1 273 -39 227 332 144 26 chr9 115164606 115164919 -27106525 - L2 LINE L2 -638 2676 2327 2115 114 10 13 chr9 115165270 115165568 -27105876 - AluSx SINE Alu -15 297 1 1484 166 81 65 chr9 115166078 115166468 -27104976 - MER89 LTR ERV1 -5 554 172 2050 106 0 11 chr9 115166468 115166743 -27104701 + AluSx SINE Alu 1 272 -40 234 0 0 0 chr9 115166744 115166770 -27104674 + (TC)n Simple_repeat Simple_repeat 2 27 0 1484 166 81 65 chr9 115166770 115166825 -27104619 - MER89 LTR ERV1 -386 173 1 2295 112 3 0 chr9 115167505 115167810 -27103634 + AluSp SINE Alu 1 306 -7 1082 231 72 172 chr9 115168174 115168582 -27102862 + L2 LINE L2 2160 2607 -706 499 186 51 68 chr9 115168582 115168700 -27102744 + FLAM_A SINE Alu 10 125 -17 1082 231 72 172 chr9 115168700 115168816 -27102628 + L2 LINE L2 2607 2733 -580 1820 163 0 3 chr9 115168816 115169099 -27102345 - AluJb SINE Alu -30 282 1 1082 231 72 172 chr9 115169099 115169511 -27101933 + L2 LINE L2 2733 3108 -205 1624 154 60 4 chr9 115169789 115170055 -27101389 - AluSx SINE Alu -31 281 1 661 260 134 31 chr9 115170057 115170280 -27101164 - MIR SINE MIR -15 247 2 286 318 72 50 chr9 115170299 115170576 -27100868 - L2 LINE L2 -214 3099 2817 246 333 108 8 chr9 115171212 115171332 -27100112 + MIR3 SINE MIR 59 190 -18 1119 204 19 83 chr9 115172820 115173134 -27098310 + L1MC4 LINE L1 6785 7078 -964 1785 255 118 3 chr9 115173136 115173721 -27097723 + L1MC4 LINE L1 7246 7897 -145 598 356 42 8 chr9 115174024 115174285 -27097159 - L2 LINE L2 -337 2977 2708 210 197 45 15 chr9 115174300 115174366 -27097078 + (TA)n Simple_repeat Simple_repeat 1 68 0 3523 118 68 78 chr9 115174404 115175139 -27096305 + Tigger3b DNA MER2_type 27 754 -477 2172 124 3 0 chr9 115175145 115175452 -27095992 - AluSx SINE Alu -2 310 3 241 122 0 0 chr9 115175452 115175493 -27095951 + Tigger3b DNA MER2_type 735 775 -457 1427 128 244 0 chr9 115175493 115175767 -27095677 + Tigger3b DNA MER2_type 892 1232 0 1174 253 103 11 chr9 115175781 115176141 -27095303 - L1ME1 LINE L1 -88 6078 5686 23 0 0 0 chr9 115176167 115176190 -27095254 + AT_rich Low_complexity Low_complexity 1 23 0 703 229 57 13 chr9 115176190 115176347 -27095097 - FAM SINE Alu -11 164 1 1242 232 29 32 chr9 115176468 115176591 -27094853 - L1ME1 LINE L1 -1004 5142 5020 1979 153 0 3 chr9 115176591 115176891 -27094553 - 7SLRNA srpRNA srpRNA -11 309 11 1242 232 29 32 chr9 115176891 115177176 -27094268 - L1ME1 LINE L1 -1126 5020 4735 290 303 58 54 chr9 115177223 115177310 -27094134 + L1ME3A LINE L1 4089 4174 -1972 2052 135 0 3 chr9 115177310 115177607 -27093837 + AluSx SINE Alu 1 296 -16 290 303 58 54 chr9 115177607 115177796 -27093648 + L1ME3A LINE L1 4174 4366 -1780 618 326 43 0 chr9 115177827 115178014 -27093430 - MIR SINE MIR -32 230 36 2046 111 38 0 chr9 115178071 115178359 -27093085 + AluY SINE Alu 1 299 -12 782 224 33 63 chr9 115178362 115178444 -27093000 + L1ME3A LINE L1 4413 4496 -1650 1566 186 19 36 chr9 115178444 115178751 -27092693 + AluJb SINE Alu 3 304 -8 782 224 33 63 chr9 115178751 115178971 -27092473 + L1ME3A LINE L1 4496 4706 -1440 1993 130 13 7 chr9 115179078 115179379 -27092065 + AluSx SINE Alu 1 303 -9 2621 222 138 70 chr9 115179391 115179978 -27091466 + L1MC4 LINE L1 6409 6955 -1087 355 173 0 0 chr9 115179978 115180030 -27091414 - Alu SINE Alu -250 52 1 2205 119 0 0 chr9 115180040 115180334 -27091110 - AluSx SINE Alu -18 294 1 2621 222 138 70 chr9 115180334 115180467 -27090977 + L1MC4 LINE L1 6963 7086 -956 2465 72 3 0 chr9 115180467 115180774 -27090670 + AluY SINE Alu 4 311 0 2621 222 138 70 chr9 115180774 115181074 -27090370 + L1MC4 LINE L1 7086 7565 -477 725 189 0 35 chr9 115181079 115181222 -27090222 + AluJo SINE Alu 82 219 -93 623 172 0 0 chr9 115181226 115181365 -27090079 + AluJb SINE Alu 192 330 0 339 265 66 0 chr9 115181370 115181506 -27089938 + L1MC4 LINE L1 7572 7716 -326 1276 175 19 52 chr9 115181506 115181774 -27089670 + AluJo SINE Alu 34 292 -20 698 206 56 22 chr9 115181774 115181954 -27089490 + L1MC4 LINE L1 7733 7918 -124 378 205 0 115 chr9 115181987 115182109 -27089335 + L1MC4 LINE L1 7902 8009 -33 494 219 134 31 chr9 115182148 115182440 -27089004 + L1ME3A LINE L1 5021 5342 -804 * 849 73 0 0 chr9 115182439 115182548 -27088896 + L1PB1 LINE L1 6000 6108 -43 914 256 129 43 chr9 115182561 115183102 -27088342 + L1ME3A LINE L1 5352 5941 -229 264 281 8 83 chr9 115183233 115183354 -27088090 + L1ME3A LINE L1 5971 6082 -88 396 241 143 0 chr9 115183448 115183581 -27087863 - L2 LINE L2 -1215 2099 1948 25 0 0 0 chr9 115184065 115184090 -27087354 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 115184812 115184833 -27086611 + AT_rich Low_complexity Low_complexity 1 21 0 257 324 89 27 chr9 115185254 115185479 -27085965 + MIR SINE MIR 21 259 -3 207 311 14 0 chr9 115186231 115186305 -27085139 + L3 LINE CR1 931 1005 -572 745 78 0 0 chr9 115186309 115186399 -27085045 + 5S rRNA rRNA 1 90 -31 298 267 206 14 chr9 115186434 115186580 -27084864 + L3 LINE CR1 1051 1224 -353 257 148 148 0 chr9 115186585 115186639 -27084805 + L1MB4 LINE L1 6113 6174 -6 330 210 188 74 chr9 115187259 115187488 -27083956 - L2 LINE L2 -62 3251 2997 1933 130 61 28 chr9 115187629 115187990 -27083454 + THE1C LTR MaLR 1 373 -2 1414 147 50 29 chr9 115188099 115188337 -27083107 - AluJb SINE Alu -69 243 1 4548 169 50 16 chr9 115188428 115189443 -27082001 + L1MB3 LINE L1 5107 6172 -11 325 304 122 6 chr9 115189571 115189752 -27081692 + L2 LINE L2 2652 2853 -461 2340 100 0 0 chr9 115190023 115190324 -27081120 + AluSq SINE Alu 1 301 -12 327 65 0 0 chr9 115190324 115190370 -27081074 + (TA)n Simple_repeat Simple_repeat 2 47 0 302 306 107 8 chr9 115190386 115190507 -27080937 + L2 LINE L2 3149 3281 -32 1571 200 28 0 chr9 115190584 115190874 -27080570 - AluJo SINE Alu -14 298 1 2351 101 0 0 chr9 115191709 115192015 -27079429 + AluSq SINE Alu 1 306 -7 1082 231 72 172 chr9 115192379 115192787 -27078657 + L2 LINE L2 2160 2607 -706 499 186 51 68 chr9 115192787 115192905 -27078539 + FLAM_A SINE Alu 10 125 -17 1082 231 72 172 chr9 115192905 115193021 -27078423 + L2 LINE L2 2607 2733 -580 1820 163 0 3 chr9 115193021 115193304 -27078140 - AluJb SINE Alu -30 282 1 1082 231 72 172 chr9 115193304 115193716 -27077728 + L2 LINE L2 2733 3108 -205 1624 154 60 4 chr9 115193994 115194260 -27077184 - AluSx SINE Alu -31 281 1 661 260 134 31 chr9 115194262 115194485 -27076959 - MIR SINE MIR -15 247 2 286 318 72 50 chr9 115194504 115194781 -27076663 - L2 LINE L2 -214 3099 2817 246 333 108 8 chr9 115195417 115195537 -27075907 + MIR3 SINE MIR 59 190 -18 1119 204 19 83 chr9 115197025 115197339 -27074105 + L1MC4 LINE L1 6785 7078 -964 1785 255 118 3 chr9 115197341 115197926 -27073518 + L1MC4 LINE L1 7246 7897 -145 231 179 0 18 chr9 115198277 115198333 -27073111 - L1ME3 LINE L1 -17 6145 6091 380 270 101 68 chr9 115198942 115199238 -27072206 + L1MC/D LINE L1 4402 4707 -1439 1899 116 6 63 chr9 115199272 115199590 -27071854 + AluSq SINE Alu 1 300 -13 305 294 95 24 chr9 115199812 115200023 -27071421 + L1MC/D LINE L1 4850 5075 -1071 1252 171 0 12 chr9 115200105 115200345 -27071099 + L1MB3 LINE L1 5945 6181 -2 341 333 107 35 chr9 115200432 115200693 -27070751 + L1MC/D LINE L1 5524 5803 -2005 2017 79 8 8 chr9 115201216 115201481 -27069963 - AluY SINE Alu -9 302 38 210 323 86 0 chr9 115201754 115201847 -27069597 + MIR3 SINE MIR 98 198 -10 1535 170 3 62 chr9 115202463 115202787 -27068657 + AluJo SINE Alu 1 305 -7 2287 105 0 3 chr9 115202966 115203271 -27068173 + AluSx SINE Alu 1 304 -8 339 274 68 8 chr9 115203613 115203730 -27067714 + MIR3 SINE MIR 78 201 -7 325 87 0 0 chr9 115203835 115203881 -27067563 + U5 snRNA snRNA 1 46 -70 1761 144 18 7 chr9 115203998 115204276 -27067168 - AluSx SINE Alu -13 299 19 2125 111 0 29 chr9 115204864 115205179 -27066265 - AluSx SINE Alu -6 306 1 1188 154 72 9 chr9 115205256 115205477 -27065967 - MER46A DNA MER2_type 0 236 2 1789 160 0 49 chr9 115205494 115205819 -27065625 + AluSx SINE Alu 4 312 0 1735 171 30 7 chr9 115206119 115206417 -27065027 - AluJb SINE Alu -7 305 1 264 59 0 0 chr9 115206596 115206630 -27064814 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 1388 144 100 4 chr9 115206630 115206859 -27064585 - 7SLRNA srpRNA srpRNA -14 306 56 194 240 37 53 chr9 115208215 115208291 -27063153 + MIR SINE MIR 94 169 -39 1491 218 150 5 chr9 115208750 115209177 -27062267 + LTR54B LTR ERV1 8 496 -2 2249 93 7 0 chr9 115209186 115209487 -27061957 - AluSq SINE Alu -10 303 1 202 125 42 21 chr9 115209614 115209662 -27061782 + A-rich Low_complexity Low_complexity 5 53 0 302 257 64 0 chr9 115209763 115209872 -27061572 - L1ME4a LINE L1 -7 6114 5999 612 208 39 0 chr9 115210657 115210787 -27060657 + MER5A DNA MER1_type 55 189 0 1596 161 25 4 chr9 115211627 115211756 -27059688 + AluSx SINE Alu 1 126 -186 183 42 0 0 chr9 115211756 115211780 -27059664 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1596 161 25 4 chr9 115211780 115211929 -27059515 + AluSx SINE Alu 126 285 -27 894 19 0 0 chr9 115211929 115212033 -27059411 + (CATAA)n Simple_repeat Simple_repeat 2 105 0 300 291 135 28 chr9 115212793 115212934 -27058510 + MIR SINE MIR 92 247 -15 21 0 0 0 chr9 115213264 115213285 -27058159 + AT_rich Low_complexity Low_complexity 1 21 0 233 228 32 65 chr9 115213522 115213538 -27057906 - L1MA10 LINE L1 -1 6333 6318 558 185 114 71 chr9 115213538 115213722 -27057722 - L1ME1 LINE L1 -5 6161 5970 1466 231 135 48 chr9 115213774 115214109 -27057335 - L1MEc LINE L1 -1576 4639 4334 2041 102 18 0 chr9 115214109 115214405 -27057039 - AluSx SINE Alu 0 303 3 1466 231 135 48 chr9 115214405 115214714 -27056730 - L1MEc LINE L1 -1881 4334 3938 279 54 0 0 chr9 115214801 115214838 -27056606 + (TG)n Simple_repeat Simple_repeat 1 37 0 742 163 16 8 chr9 115215079 115215202 -27056242 + FLAM_A SINE Alu 1 124 -9 3432 255 90 40 chr9 115215518 115215901 -27055543 - L1MEc LINE L1 -2381 3834 3472 1052 172 105 86 chr9 115215901 115216262 -27055182 - MLT1A2 LTR MaLR -3 371 4 3432 255 90 40 chr9 115216262 115216857 -27054587 - L1MEc LINE L1 -2743 3472 2908 2097 136 38 16 chr9 115216857 115217224 -27054220 + THE1C LTR MaLR 1 375 0 9347 124 38 35 chr9 115217224 115218466 -27052978 + THE1C-int LTR MaLR 1 1251 -329 1868 183 0 0 chr9 115218466 115218778 -27052666 + AluSx SINE Alu 1 312 0 9347 124 38 35 chr9 115218778 115219110 -27052334 + THE1C-int LTR MaLR 1251 1580 0 1649 185 38 19 chr9 115219110 115219478 -27051966 + THE1C LTR MaLR 1 375 0 3432 255 90 40 chr9 115219478 115219585 -27051859 - L1MEc LINE L1 -3307 2908 2808 1097 256 73 0 chr9 115219585 115219902 -27051542 - MER58B DNA MER1_type -1 340 1 3432 255 90 40 chr9 115219902 115221387 -27050057 - L1MEc LINE L1 -3407 2808 1117 2369 92 0 3 chr9 115221387 115221693 -27049751 - AluSx SINE Alu -7 305 1 3432 255 90 40 chr9 115221693 115222176 -27049268 - L1MEc LINE L1 -5098 1117 660 234 294 298 9 chr9 115222592 115222820 -27048624 - L1MEc LINE L1 -6068 328 35 697 268 92 29 chr9 115223109 115223348 -27048096 + MLT1J LTR MaLR 2 255 -256 1462 174 0 4 chr9 115223642 115223883 -27047561 + AluJo SINE Alu 1 240 -72 1216 266 84 9 chr9 115224161 115224536 -27046908 + L1ME3A LINE L1 5087 5433 -737 2090 132 10 0 chr9 115224536 115224831 -27046613 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 115224831 115224852 -27046592 + (TA)n Simple_repeat Simple_repeat 2 22 0 279 0 0 0 chr9 115224851 115224882 -27046562 + (CA)n Simple_repeat Simple_repeat 2 32 0 1216 266 84 9 chr9 115224852 115225078 -27046366 + L1ME3A LINE L1 5432 5703 -467 2220 102 0 20 chr9 115225083 115225388 -27046056 + AluSq SINE Alu 1 299 -14 3420 203 33 9 chr9 115225392 115226189 -27045255 + L1MB2 LINE L1 4515 5330 -816 4185 155 59 22 chr9 115226247 115227064 -27044380 + L1MB2 LINE L1 5317 6163 -8 955 227 37 40 chr9 115227135 115227456 -27043988 + L1ME3A LINE L1 5759 6078 -92 471 186 73 108 chr9 115227609 115227813 -27043631 + MLT1J LTR MaLR 20 216 -295 329 278 130 31 chr9 115227916 115228139 -27043305 + MLT1J LTR MaLR 263 507 -4 490 292 93 28 chr9 115228146 115228374 -27043070 + L1M4 LINE L1 3770 3982 -2164 1798 168 3 19 chr9 115228374 115228683 -27042761 + AluJb SINE Alu 1 304 -8 490 292 93 28 chr9 115228683 115229054 -27042390 + L1M4 LINE L1 3982 4408 -1738 587 315 123 37 chr9 115229054 115229114 -27042330 - MLT1J LTR MaLR -13 498 445 2051 109 3 7 chr9 115229114 115229408 -27042036 + AluSx SINE Alu 14 306 -6 587 315 123 37 chr9 115229408 115229804 -27041640 - MLT1J LTR MaLR -66 445 3 1414 120 60 0 chr9 115230063 115230280 -27041164 - MER30 DNA MER1_type 0 230 1 486 300 145 52 chr9 115230718 115231138 -27040306 + L2 LINE L2 2167 2625 -689 21 0 0 0 chr9 115231148 115231169 -27040275 + AT_rich Low_complexity Low_complexity 1 21 0 2188 97 3 7 chr9 115231349 115231649 -27039795 - AluSx SINE Alu -13 299 1 23 0 0 0 chr9 115231947 115231970 -27039474 + AT_rich Low_complexity Low_complexity 1 23 0 408 279 29 12 chr9 115233473 115233645 -27037799 + L1M4 LINE L1 5103 5277 -869 336 296 133 44 chr9 115233883 115234109 -27037335 + MLT1I LTR MaLR 104 349 -60 1365 201 101 45 chr9 115234145 115234614 -27036830 + L1ME3A LINE L1 5387 5893 -277 2475 54 0 0 chr9 115234614 115234910 -27036534 + AluY SINE Alu 1 296 -15 1365 201 101 45 chr9 115234910 115234960 -27036484 + L1ME3A LINE L1 5893 5939 -231 795 129 8 15 chr9 115234960 115235092 -27036352 + FLAM_C SINE Alu 3 133 0 198 0 0 0 chr9 115235132 115235154 -27036290 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1158 177 110 50 chr9 115235155 115235597 -27035847 + L1MD2 LINE L1 5141 5594 -572 1076 170 39 175 chr9 115235639 115236051 -27035393 + L1MD2 LINE L1 5887 6242 0 2187 124 0 3 chr9 115236726 115237033 -27034411 - AluSx SINE Alu -6 306 1 2212 103 0 0 chr9 115237727 115238009 -27033435 + AluSg SINE Alu 1 282 -28 2216 124 0 0 chr9 115238028 115238326 -27033118 + AluSx SINE Alu 1 298 -14 927 210 11 0 chr9 115238713 115238894 -27032550 - AluJb SINE Alu -15 297 115 1463 218 97 104 chr9 115239325 115239802 -27031642 + MER77 LTR ERV1 53 527 -78 2407 78 0 0 chr9 115239802 115240111 -27031333 + AluY SINE Alu 1 309 -2 1463 218 97 104 chr9 115240111 115240189 -27031255 + MER77 LTR ERV1 527 604 -1 25 65 0 0 chr9 115240270 115240316 -27031128 + AT_rich Low_complexity Low_complexity 1 46 0 1952 137 21 3 chr9 115240317 115240601 -27030843 - AluJb SINE Alu -21 291 3 31 26 0 0 chr9 115240712 115240750 -27030694 + AT_rich Low_complexity Low_complexity 1 38 0 1981 95 4 0 chr9 115240750 115241029 -27030415 - AluSx SINE Alu 0 310 31 1965 138 7 3 chr9 115241315 115241619 -27029825 + AluJo SINE Alu 2 306 -6 1337 118 39 0 chr9 115241985 115242188 -27029256 - MER30 DNA MER1_type 0 230 20 1505 170 94 4 chr9 115242205 115242470 -27028974 - AluJo SINE Alu -23 289 1 279 0 0 0 chr9 115242495 115242526 -27028918 + (A)n Simple_repeat Simple_repeat 1 31 0 2271 96 0 10 chr9 115243647 115243949 -27027495 + AluSx SINE Alu 1 299 -13 956 257 147 38 chr9 115244645 115245339 -27026105 - L2 LINE L2 0 3313 2551 1255 133 93 4 chr9 115245363 115245589 -27025855 - MER2 DNA MER2_type -3 342 97 703 173 253 69 chr9 115245589 115245791 -27025653 - MER8 DNA MER2_type 0 239 1 1293 172 19 80 chr9 115245811 115246125 -27025319 + AluJo SINE Alu 1 295 -17 351 212 24 0 chr9 115246168 115246253 -27025191 + L1MC4 LINE L1 7766 7852 -190 553 167 39 10 chr9 115246267 115246369 -27025075 + L1MC4 LINE L1 7269 7373 -669 976 195 62 5 chr9 115246385 115246466 -27024978 + AluJo SINE Alu 41 116 -196 192 77 0 0 chr9 115246466 115246492 -27024952 + (CAA)n Simple_repeat Simple_repeat 2 27 0 976 195 62 5 chr9 115246492 115246605 -27024839 + AluJo SINE Alu 116 246 -66 183 42 0 0 chr9 115246621 115246645 -27024799 + (T)n Simple_repeat Simple_repeat 1 24 0 333 179 186 0 chr9 115246731 115246841 -27024603 + L1MC4 LINE L1 7902 7995 0 1921 170 7 0 chr9 115246906 115247212 -27024232 + AluJb SINE Alu 1 308 -4 803 190 18 31 chr9 115247354 115247517 -27023927 - AluJb SINE Alu -19 293 133 745 248 242 10 chr9 115247572 115247878 -27023566 - MLT1F LTR MaLR 0 542 166 1747 213 47 90 chr9 115247964 115248011 -27023433 + L1M4 LINE L1 2256 2303 -3843 855 212 79 68 chr9 115248011 115248351 -27023093 - MER2 DNA MER2_type 0 344 1 1747 213 47 90 chr9 115248351 115248559 -27022885 + L1M4 LINE L1 2303 2518 -3628 1219 216 153 0 chr9 115248559 115248814 -27022630 + AluJo SINE Alu 2 295 -7 1747 213 47 90 chr9 115248814 115248977 -27022467 + L1M4 LINE L1 2518 2686 -3460 2538 57 0 0 chr9 115248977 115249275 -27022169 - AluY SINE Alu -13 298 1 1747 213 47 90 chr9 115249275 115249623 -27021821 + L1M4 LINE L1 2686 2991 -3155 859 110 28 48 chr9 115249632 115249777 -27021667 + FRAM SINE Alu 35 176 0 1204 160 246 25 chr9 115250274 115250518 -27020926 + AluJo SINE Alu 1 298 -4 1845 149 7 17 chr9 115250850 115251146 -27020298 + AluSx SINE Alu 1 293 -19 370 220 235 15 chr9 115251342 115251474 -27019970 + MIR SINE MIR 88 248 -14 1927 127 7 29 chr9 115251566 115251873 -27019571 - AluJb SINE Alu -12 300 1 492 33 0 0 chr9 115252537 115252598 -27018846 + AluSp/q SINE Alu 245 305 -8 252 0 0 0 chr9 115252648 115252676 -27018768 + (TG)n Simple_repeat Simple_repeat 1 28 0 389 288 8 24 chr9 115253064 115253189 -27018255 + MLT1J LTR MaLR 93 215 -296 1416 126 0 5 chr9 115253194 115253392 -27018052 + AluSx SINE Alu 1 197 -115 606 167 7 28 chr9 115253400 115253544 -27017900 + GA-rich Low_complexity Low_complexity 4 144 0 1655 162 37 3 chr9 115253560 115253857 -27017587 + AluJo SINE Alu 5 311 -1 530 229 89 56 chr9 115253865 115254079 -27017365 + MLT1J LTR MaLR 290 510 -1 404 216 85 74 chr9 115254826 115255002 -27016442 + L1M4 LINE L1 3457 3634 -2512 290 226 54 0 chr9 115255108 115255201 -27016243 + L1M4 LINE L1 2936 3033 -3113 861 263 173 57 chr9 115255342 115255833 -27015611 + MLT1E LTR MaLR 3 550 -43 1580 108 36 114 chr9 115255849 115256183 -27015261 + AluYb8 SINE Alu 1 308 -10 2552 152 19 29 chr9 115256201 115256683 -27014761 + L1MB5 LINE L1 5687 6163 -11 1733 156 17 36 chr9 115256712 115257014 -27014430 + AluJo SINE Alu 3 298 -14 1123 156 24 54 chr9 115257144 115257349 -27014095 + AluJb SINE Alu 96 294 -18 207 0 0 0 chr9 115257419 115257442 -27014002 + (A)n Simple_repeat Simple_repeat 1 23 0 2866 203 27 24 chr9 115257883 115258534 -27012910 + L1M4 LINE L1 4065 4720 -1426 1842 163 7 10 chr9 115258534 115258829 -27012615 - AluJb SINE Alu -18 294 1 2866 203 27 24 chr9 115258829 115258876 -27012568 + L1M4 LINE L1 4720 4765 -1381 345 158 0 35 chr9 115258887 115258944 -27012500 + L1M3e LINE L1 1 55 -6975 2516 125 11 24 chr9 115258944 115259313 -27012131 - THE1B LTR MaLR 0 364 1 7264 118 26 2 chr9 115259313 115260338 -27011106 - THE1B-int LTR MaLR 0 1580 531 252 379 7 7 chr9 115260339 115260479 -27010965 + MER110-int LTR ERV1 2423 2562 -2085 2260 126 0 0 chr9 115260617 115260926 -27010518 + AluSx SINE Alu 1 309 -3 1135 152 0 27 chr9 115260926 115261110 -27010334 + AluSg/x SINE Alu 132 310 0 1894 227 28 77 chr9 115261112 115261626 -27009818 + L1M2 LINE L1 2072 2481 -4368 212 75 0 25 chr9 115261626 115261666 -27009778 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1894 227 28 77 chr9 115261666 115261868 -27009576 + L1M2 LINE L1 2481 2691 -4158 382 252 145 6 chr9 115261908 115262067 -27009377 + L1M4c LINE L1 2025 2205 -4179 * 7116 115 149 10 chr9 115262062 115262794 -27008650 - THE1B-int LTR MaLR -293 1287 658 2083 119 25 0 chr9 115262794 115263079 -27008365 - AluSg SINE Alu -18 292 1 7116 115 149 10 chr9 115263079 115263476 -27007968 - THE1B-int LTR MaLR -922 658 1 2474 114 19 32 chr9 115263476 115263845 -27007599 - THE1B LTR MaLR 0 364 1 1930 133 39 39 chr9 115263845 115263889 -27007555 + L1MA7 LINE L1 5745 5788 -503 273 89 0 0 chr9 115263889 115263934 -27007510 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 1930 133 39 39 chr9 115263934 115264250 -27007194 + L1MA7 LINE L1 5787 6105 -186 900 204 33 0 chr9 115264252 115264433 -27007011 + Tigger1 DNA MER2_type 2 188 -2230 1512 160 102 0 chr9 115264456 115264712 -27006732 - AluJo SINE Alu -30 282 1 240 29 0 0 chr9 115264867 115264902 -27006542 + Alu SINE Alu 268 302 0 1090 115 22 6 chr9 115264906 115265088 -27006356 + L1MC1 LINE L1 5814 5998 -335 782 201 56 33 chr9 115265188 115265402 -27006042 + L1MCb LINE L1 522 740 -5305 1023 184 24 5 chr9 115265433 115265645 -27005799 + L1MCb LINE L1 856 1071 -4974 1869 181 137 28 chr9 115265650 115265843 -27005601 + LTR45B LTR ERV1 5 175 -314 1547 193 0 17 chr9 115265843 115266133 -27005311 + AluJo SINE Alu 4 288 -24 1869 181 137 28 chr9 115266133 115266376 -27005068 + LTR45B LTR ERV1 175 489 0 2307 188 91 55 chr9 115266378 115267090 -27004354 + L1MCb LINE L1 1074 1811 -4753 2188 107 17 0 chr9 115267243 115267541 -27003903 + AluSx SINE Alu 1 303 -9 1476 144 82 0 chr9 115268153 115268409 -27003035 + L1MC3 LINE L1 7342 7618 -167 2155 108 47 0 chr9 115268428 115268725 -27002719 + AluSx SINE Alu 1 311 -1 327 175 288 0 chr9 115268729 115268809 -27002635 + MLT1F1 LTR MaLR 412 514 -53 621 200 80 7 chr9 115268990 115269140 -27002304 + L1MC3 LINE L1 7624 7784 -1 2006 66 8 8 chr9 115269170 115269429 -27002015 - L1PB1 LINE L1 -38 6113 5855 2147 206 74 34 chr9 115269497 115269620 -27001824 - MER21B LTR ERV1 -28 835 718 2344 99 0 16 chr9 115269620 115269934 -27001510 - AluSx SINE Alu -1 311 3 2147 206 74 34 chr9 115269934 115270335 -27001109 - MER21B LTR ERV1 -145 718 290 465 226 32 0 chr9 115270450 115270543 -27000901 - MER21B LTR ERV1 -767 96 1 239 263 0 0 chr9 115270543 115270600 -27000844 + L1MEd LINE L1 92 148 -5971 391 189 11 21 chr9 115270604 115270699 -27000745 + MER20 DNA MER1_type 7 100 -119 3585 153 69 12 chr9 115270703 115271356 -27000088 - MER50 LTR ERV1 -44 690 1 472 156 59 148 chr9 115271357 115271492 -26999952 + MER20 DNA MER1_type 96 218 -1 223 231 19 0 chr9 115271776 115271828 -26999616 + (TA)n Simple_repeat Simple_repeat 1 53 0 816 224 10 10 chr9 115271874 115272066 -26999378 + AluJo SINE Alu 6 197 -115 287 385 111 20 chr9 115272628 115272880 -26998564 + L2 LINE L2 2422 2696 -618 277 341 0 0 chr9 115273640 115273731 -26997713 - MER102b DNA MER1_type 0 341 251 2176 89 7 10 chr9 115273732 115274036 -26997408 + AluSx SINE Alu 1 303 -9 1043 132 66 15 chr9 115275510 115275707 -26995737 - L1MB2 LINE L1 -7 6164 5958 267 31 0 0 chr9 115275916 115275948 -26995496 + (CA)n Simple_repeat Simple_repeat 2 33 0 605 207 22 52 chr9 115276019 115276154 -26995290 - FLAM_A SINE Alu -1 132 2 2142 76 28 10 chr9 115276193 115276481 -26994963 - AluSc SINE Alu -16 293 1 394 119 45 0 chr9 115276517 115276584 -26994860 - Tigger4(Zombi) DNA MER2_type 0 2731 2662 246 128 0 0 chr9 115276560 115276599 -26994845 - Tigger4(Zombi) DNA MER2_type -2692 39 1 * 787 272 93 38 chr9 115276599 115276783 -26994661 - L1MB2 LINE L1 -2017 5791 5619 1901 104 3 85 chr9 115276783 115277111 -26994333 + AluSx SINE Alu 1 301 -11 787 272 93 38 chr9 115277111 115277323 -26994121 - L1MB2 LINE L1 -2189 5619 5373 1085 188 30 0 chr9 115277323 115277525 -26993919 + MER20 DNA MER1_type 12 219 0 2143 129 3 0 chr9 115277896 115278198 -26993246 - AluSx SINE Alu -7 305 3 328 271 53 103 chr9 115278330 115278545 -26992899 - L1MB2 LINE L1 -1176 4970 4779 1630 166 18 14 chr9 115278545 115278828 -26992616 - AluJo SINE Alu -28 284 1 328 271 53 103 chr9 115278828 115278970 -26992474 - L1MB2 LINE L1 -1367 4779 4631 466 162 54 0 chr9 115279377 115279451 -26991993 + AluJb SINE Alu 156 233 -79 1891 132 75 60 chr9 115279457 115279858 -26991586 - LTR61 LTR ERV1 0 595 189 344 186 21 150 chr9 115279975 115280115 -26991329 + L1MC4a LINE L1 5907 6028 -1780 2204 98 10 13 chr9 115280150 115280323 -26991121 - AluSx SINE Alu -6 306 133 2101 101 17 27 chr9 115280323 115280620 -26990824 - AluSg SINE Alu -16 294 1 2204 98 10 13 chr9 115280620 115280753 -26990691 - AluSx SINE Alu -179 133 1 825 140 14 49 chr9 115280755 115280898 -26990546 - FLAM_C SINE Alu -3 140 3 297 104 0 42 chr9 115280918 115280966 -26990478 - FLAM SINE Alu -6 127 82 271 324 34 6 chr9 115281145 115281324 -26990120 + L1ME3A LINE L1 4143 4326 -1820 1588 195 11 7 chr9 115281332 115281614 -26989830 + AluJb SINE Alu 6 288 -24 833 205 74 51 chr9 115281690 115282041 -26989403 + L1MC5 LINE L1 7409 7767 -194 1846 147 10 10 chr9 115282042 115282342 -26989102 - AluJo SINE Alu -7 305 6 1028 248 72 81 chr9 115282483 115282704 -26988740 + L1MC4 LINE L1 7298 7519 -523 2002 164 0 0 chr9 115282704 115283009 -26988435 + AluJb SINE Alu 1 305 -7 2441 77 0 0 chr9 115283010 115283308 -26988136 + AluSg SINE Alu 3 300 -10 1860 131 46 14 chr9 115283311 115283593 -26987851 + AluSg SINE Alu 2 292 -18 1028 248 72 81 chr9 115283593 115283820 -26987624 + L1MC4 LINE L1 7521 7748 -294 1812 159 20 0 chr9 115283854 115284149 -26987295 - AluJb SINE Alu -11 301 1 372 185 59 42 chr9 115284225 115284344 -26987100 + L1MC4 LINE L1 7922 8042 0 1190 266 79 47 chr9 115284355 115284610 -26986834 + L1ME3A LINE L1 4396 4641 -1505 2091 120 0 0 chr9 115284610 115284940 -26986504 + AluSx SINE Alu 1 330 0 1190 266 79 47 chr9 115284940 115285280 -26986164 + L1ME3A LINE L1 4641 5011 -1135 2002 134 7 0 chr9 115285296 115285580 -26985864 - AluJo SINE Alu -26 286 1 2223 123 0 0 chr9 115285721 115286030 -26985414 + AluSx SINE Alu 1 309 0 1219 212 11 26 chr9 115286033 115286297 -26985147 + AluJo SINE Alu 23 282 -30 254 253 71 0 chr9 115286302 115286401 -26985043 + L1ME3A LINE L1 5155 5260 -886 2017 113 69 0 chr9 115286451 115286742 -26984702 + AluSp SINE Alu 1 311 -2 4477 61 22 22 chr9 115286780 115287818 -26983626 - MER11A LTR ERVK 0 1266 1 20775 62 4 2 chr9 115287818 115290347 -26981097 - HERVK11 LTR ERVK 0 7953 5421 * 22094 77 3 19 chr9 115290343 115293917 -26977527 - HERVK11 LTR ERVK -4414 3539 1 4663 57 20 6 chr9 115293917 115294934 -26976510 - MER11A LTR ERVK 0 1266 1 524 233 20 62 chr9 115294934 115295137 -26976307 + L1ME3A LINE L1 5355 5547 -615 2403 84 0 0 chr9 115295154 115295450 -26975994 + AluSc SINE Alu 1 296 -13 1556 198 89 10 chr9 115295451 115295856 -26975588 - MLT1C LTR MaLR -30 437 1 1522 152 76 0 chr9 115296032 115296296 -26975148 + AluJo SINE Alu 26 309 -3 815 221 13 0 chr9 115296302 115296456 -26974988 - MER58D DNA MER1_type -225 161 6 307 272 117 37 chr9 115296552 115296714 -26974730 + L1ME3A LINE L1 5988 6162 -8 1526 168 28 4 chr9 115297142 115297392 -26974052 + AluJo SINE Alu 41 296 -16 320 175 0 32 chr9 115297398 115297461 -26973983 + AluJb SINE Alu 73 133 -169 2193 70 3 76 chr9 115297468 115297784 -26973660 + AluSg SINE Alu 1 293 -17 215 31 31 0 chr9 115297784 115297816 -26973628 + (CA)n Simple_repeat Simple_repeat 2 34 0 2216 185 52 11 chr9 115297903 115298347 -26973097 - L1MB8 LINE L1 -3 6175 5714 283 277 43 11 chr9 115298388 115298482 -26972962 - L1ME4a LINE L1 -18 6103 6007 1159 91 0 36 chr9 115299211 115299376 -26972068 + AluSg/x SINE Alu 135 293 -17 373 280 50 35 chr9 115299669 115299869 -26971575 + L1MC5 LINE L1 7713 7915 -46 2009 147 0 0 chr9 115299899 115300205 -26971239 + AluJb SINE Alu 3 308 -4 2453 104 0 0 chr9 115300706 115301014 -26970430 + AluSx SINE Alu 1 308 -4 640 270 34 6 chr9 115301015 115301193 -26970251 + L1PB4 LINE L1 5961 6143 -13 1709 94 5 0 chr9 115301518 115301741 -26969703 + AluSq SINE Alu 1 224 -89 2370 80 10 0 chr9 115301996 115302296 -26969148 - AluSq SINE Alu -10 303 1 1865 182 0 0 chr9 115302943 115303245 -26968199 - AluJb SINE Alu -10 302 1 607 94 47 28 chr9 115303262 115303368 -26968076 - L1MB3 LINE L1 -1 6182 6075 1812 204 32 6 chr9 115304000 115304338 -26967106 - MER7A DNA MER2_type -1 345 1 2430 97 0 3 chr9 115304708 115305019 -26966425 - AluSq SINE Alu -3 310 1 1311 186 26 64 chr9 115305085 115305396 -26966048 + AluJo SINE Alu 1 299 -13 186 321 82 87 chr9 115305532 115305728 -26965716 + L3 LINE CR1 868 1062 -515 664 219 42 52 chr9 115305849 115306041 -26965403 + MIR SINE MIR 1 190 -72 1871 159 0 7 chr9 115306173 115306462 -26964982 + AluJb SINE Alu 1 287 -25 1921 256 114 32 chr9 115306466 115306921 -26964523 + Charlie8 DNA MER1_type 78 494 -1923 2117 125 3 3 chr9 115306921 115307216 -26964228 + AluSx SINE Alu 1 295 -17 1921 256 114 32 chr9 115307216 115307552 -26963892 + Charlie8 DNA MER1_type 494 934 -1483 1147 171 60 5 chr9 115307554 115307753 -26963691 + MER46A DNA MER2_type 1 210 -26 853 282 97 10 chr9 115307761 115308059 -26963385 + Charlie8 DNA MER1_type 936 1259 -1158 592 273 27 0 chr9 115308180 115308330 -26963114 + Charlie8 DNA MER1_type 1590 1743 -674 871 104 7 62 chr9 115308350 115308494 -26962950 + AluJb SINE Alu 1 136 -176 299 267 120 66 chr9 115308494 115308725 -26962719 + Charlie8 DNA MER1_type 1965 2213 -204 2137 110 6 25 chr9 115308725 115309042 -26962402 + AluSp SINE Alu 1 311 -2 299 267 120 66 chr9 115309042 115309068 -26962376 + Charlie8 DNA MER1_type 2213 2236 -181 361 215 97 42 chr9 115309094 115309238 -26962206 + Charlie8 DNA MER1_type 2205 2356 -61 4949 41 0 5 chr9 115309238 115309822 -26961622 - LTR10C LTR ERV1 0 591 11 200 294 0 15 chr9 115309887 115309955 -26961489 + MIR SINE MIR 185 251 -11 535 344 53 8 chr9 115310844 115311088 -26960356 - MIR SINE MIR 0 262 8 1960 56 16 8 chr9 115311399 115311649 -26959795 + AluY SINE Alu 45 296 -15 1677 155 9 64 chr9 115311656 115311985 -26959459 + AluJo SINE Alu 1 311 -1 1548 146 3 96 chr9 115311991 115312313 -26959131 + AluJo SINE Alu 1 292 -20 694 189 79 8 chr9 115312648 115312808 -26958636 - L1ME2 LINE L1 -6 6317 6010 1134 134 0 0 chr9 115312871 115313035 -26958409 + FRAM SINE Alu 1 40 0 2121 134 3 0 chr9 115313326 115313616 -26957828 + AluSx SINE Alu 3 293 -19 1767 137 76 4 chr9 115313829 115314106 -26957338 + AluJb SINE Alu 1 297 -15 252 184 0 0 chr9 115314107 115314156 -26957288 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 226 231 0 0 chr9 115314219 115314271 -26957173 - L1MC4 LINE L1 -1339 6703 6652 29 28 0 0 chr9 115314339 115314375 -26957069 + AT_rich Low_complexity Low_complexity 1 36 0 2073 110 25 3 chr9 115314550 115314832 -26956612 - AluSx SINE Alu -24 288 1 1331 158 124 31 chr9 115315585 115315844 -26955600 + AluSx SINE Alu 2 284 -28 1306 190 53 53 chr9 115315917 115316201 -26955243 + AluJo SINE Alu 1 284 -28 624 63 0 0 chr9 115316205 115316284 -26955160 + MER75B DNA T2_type 1 79 -164 1556 73 91 5 chr9 115316284 115316504 -26954940 + MER75B DNA T2_type 5 243 0 1757 173 10 20 chr9 115316576 115316882 -26954562 + AluJb SINE Alu 1 303 -9 862 130 7 29 chr9 115317090 115317228 -26954216 - AluSq/x SINE Alu -178 135 1 225 114 45 0 chr9 115317710 115317754 -26953690 + Alu SINE Alu 255 300 -2 388 280 70 60 chr9 115318110 115318310 -26953134 + L1M4c LINE L1 1204 1405 -4979 316 216 153 57 chr9 115318335 115318489 -26952955 + HAL1b LINE L1 568 702 -882 1539 112 124 8 chr9 115318866 115319115 -26952329 - AluSg1 SINE Alu -9 300 23 300 49 0 0 chr9 115319118 115319159 -26952285 + AluY SINE Alu 258 298 -4 264 291 163 15 chr9 115319163 115319359 -26952085 - L1M4 LINE L1 -1784 4362 4138 239 222 56 0 chr9 115319502 115319556 -26951888 - Tigger2 DNA MER2_type -11 2707 2651 40 79 0 0 chr9 115319596 115319685 -26951759 + AT_rich Low_complexity Low_complexity 1 89 0 229 366 47 0 chr9 115319727 115319940 -26951504 - L1M4 LINE L1 -1870 4276 4054 1755 173 0 42 chr9 115320550 115320863 -26950581 - AluJo SINE Alu -12 300 1 2270 115 0 0 chr9 115321054 115321358 -26950086 - AluSx SINE Alu -8 304 1 193 250 179 0 chr9 115321580 115321664 -26949780 + MIR3 SINE MIR 79 177 -31 227 263 163 0 chr9 115321718 115321798 -26949646 - L1MC5 LINE L1 -60 7901 7809 231 36 0 0 chr9 115321860 115321888 -26949556 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 2131 114 0 0 chr9 115321888 115322177 -26949267 - AluSx SINE Alu -23 289 1 1069 217 71 23 chr9 115322185 115322581 -26948863 - L1MC5 LINE L1 -182 7779 7365 208 297 109 0 chr9 115322650 115322714 -26948730 - L2 LINE L2 0 3313 3243 461 226 138 44 chr9 115323284 115323532 -26947912 - MER112 DNA MER1_type -5 255 6 2151 118 7 0 chr9 115323724 115324021 -26947423 - AluSx SINE Alu -13 299 1 289 339 139 9 chr9 115324100 115324215 -26947229 - L2 LINE L2 -2 3270 3141 2689 242 71 95 chr9 115324351 115324632 -26946812 - L2 LINE L2 -1 3312 3026 1815 162 30 3 chr9 115324632 115324928 -26946516 + AluJo SINE Alu 1 304 -8 2689 242 71 95 chr9 115324928 115324945 -26946499 - L2 LINE L2 -287 3026 3010 237 162 0 0 chr9 115324945 115324982 -26946462 - tRNA-Glu-GAG tRNA tRNA -38 37 1 2689 242 71 95 chr9 115324982 115325592 -26945852 - L2 LINE L2 -303 3010 2387 2257 102 3 13 chr9 115325592 115325906 -26945538 + AluSx SINE Alu 1 311 -1 2689 242 71 95 chr9 115325906 115326313 -26945131 - L2 LINE L2 -926 2387 1989 2660 122 46 19 chr9 115326313 115326689 -26944755 + MSTA LTR MaLR 1 391 -37 2403 79 0 22 chr9 115326689 115327004 -26944440 - AluSx SINE Alu -4 308 1 2660 122 46 19 chr9 115327004 115327044 -26944400 + MSTA LTR MaLR 391 428 0 2689 242 71 95 chr9 115327044 115327098 -26944346 - L2 LINE L2 -1324 1989 1935 427 244 171 0 chr9 115327126 115327290 -26944154 + L2 LINE L2 3122 3313 0 2035 116 13 23 chr9 115327595 115327897 -26943547 - AluSx SINE Alu -13 299 1 240 354 32 32 chr9 115327947 115328105 -26943339 - L2 LINE L2 -226 3046 2889 226 337 0 30 chr9 115328222 115328323 -26943121 - L2 LINE L2 -504 2810 2713 715 220 12 6 chr9 115329303 115329471 -26941973 + MER104 DNA Tc2 6 174 -6 853 224 116 22 chr9 115330294 115330526 -26940918 + MIR SINE MIR 9 262 0 947 176 0 52 chr9 115330536 115330729 -26940715 - FRAM SINE Alu -1 175 1 1607 137 126 7 chr9 115330815 115331085 -26940359 + AluJo SINE Alu 1 302 0 565 216 0 48 chr9 115331191 115331316 -26940128 + L2 LINE L2 3194 3312 -1 226 238 50 40 chr9 115331695 115331770 -26939674 + L1ME4a LINE L1 5992 6070 -51 2370 109 0 0 chr9 115331770 115332082 -26939362 - AluSx SINE Alu 0 312 1 226 238 50 40 chr9 115332082 115332107 -26939337 + L1ME4a LINE L1 6070 6093 -28 710 244 6 0 chr9 115332209 115332377 -26939067 + MER104 DNA Tc2 6 174 -6 1997 110 40 7 chr9 115332788 115333088 -26938356 + AluSg SINE Alu 1 310 0 189 0 0 0 chr9 115333658 115333679 -26937765 + (TA)n Simple_repeat Simple_repeat 1 21 0 2029 143 10 0 chr9 115333826 115334119 -26937325 - AluJb SINE Alu -15 297 2 701 306 39 31 chr9 115334585 115334843 -26936601 + MIR SINE MIR 3 262 0 315 320 50 0 chr9 115334841 115334941 -26936503 - MIR SINE MIR -123 139 35 * 27 0 0 0 chr9 115335002 115335029 -26936415 + AT_rich Low_complexity Low_complexity 1 27 0 581 168 0 0 chr9 115335151 115335252 -26936192 + FLAM_C SINE Alu 42 142 -1 1767 147 7 34 chr9 115335413 115335552 -26935892 + AluJb SINE Alu 1 142 -170 1961 139 4 0 chr9 115335552 115335871 -26935573 + AluSx SINE Alu 4 323 0 1767 147 7 34 chr9 115335871 115336022 -26935422 + AluJb SINE Alu 142 284 -28 2179 119 0 22 chr9 115336802 115337120 -26934324 + AluJb SINE Alu 1 311 -1 497 292 238 5 chr9 115338097 115338299 -26933145 - MIR SINE MIR -6 256 8 1423 127 0 10 chr9 115338354 115338559 -26932885 + AluJo SINE Alu 87 289 -23 2060 153 0 3 chr9 115339280 115339581 -26931863 + AluJo SINE Alu 3 302 -10 180 0 0 0 chr9 115339657 115339677 -26931767 + (T)n Simple_repeat Simple_repeat 1 20 0 1958 161 0 3 chr9 115339690 115340001 -26931443 - AluJo SINE Alu -2 310 1 2048 128 16 16 chr9 115340334 115340646 -26930798 - AluSx SINE Alu 0 312 1 796 153 80 43 chr9 115340650 115340813 -26930631 - L1MC1 LINE L1 -12 6321 6153 1774 152 12 46 chr9 115341164 115341487 -26929957 + AluJo SINE Alu 1 312 0 253 240 20 0 chr9 115342571 115342621 -26928823 + MIR SINE MIR 13 63 -199 372 273 161 19 chr9 115342791 115342952 -26928492 + MIR SINE MIR 18 201 -61 315 323 50 35 chr9 115343072 115343270 -26928174 - L1M4 LINE L1 -1983 4399 4199 1845 126 22 47 chr9 115343309 115343678 -26927766 - AluY SINE Alu 0 361 1 287 151 0 27 chr9 115343678 115343699 -26927745 + CT-rich Low_complexity Low_complexity 2 180 0 2428 101 0 0 chr9 115343903 115344209 -26927235 - AluSx SINE Alu -6 306 1 350 132 97 132 chr9 115344349 115344404 -26927040 - L1MB7 LINE L1 0 6184 6134 1535 152 121 11 chr9 115344404 115344668 -26926776 + AluSg SINE Alu 1 293 -17 350 132 97 132 chr9 115344668 115344726 -26926718 - L1MB7 LINE L1 -50 6134 6075 699 188 0 43 chr9 115344970 115345108 -26926336 + FLAM_C SINE Alu 1 132 -1 2204 115 10 0 chr9 115345170 115345465 -26925979 + AluSx SINE Alu 1 298 -14 1643 156 78 7 chr9 115345743 115346025 -26925419 + AluJb SINE Alu 1 302 -10 442 188 23 77 chr9 115346442 115346604 -26924840 - L1M4 LINE L1 -2417 3965 3811 401 216 235 26 chr9 115346602 115346755 -26924689 + L1ME3A LINE L1 5887 6071 -99 * 463 216 69 0 chr9 115346814 115346916 -26924528 + MER97a DNA MER1_type? 1 109 -785 2181 96 10 0 chr9 115347287 115347579 -26923865 + AluSx SINE Alu 1 295 -17 2276 103 0 0 chr9 115348213 115348515 -26922929 - AluJb SINE Alu -10 302 1 232 243 44 29 chr9 115348566 115348702 -26922742 - L1M4 LINE L1 -3925 2459 2322 698 206 30 0 chr9 115349146 115349277 -26922167 - FRAM SINE Alu -4 172 38 28 0 0 0 chr9 115349511 115349539 -26921905 + AT_rich Low_complexity Low_complexity 1 28 0 2034 132 3 0 chr9 115349539 115349826 -26921618 - AluSq SINE Alu -23 290 3 1074 167 18 0 chr9 115349909 115350077 -26921367 + FAM SINE Alu 1 171 -4 433 326 53 95 chr9 115350176 115351470 -26919974 + L2 LINE L2 977 2216 -1098 2058 105 28 3 chr9 115351705 115351991 -26919453 + AluSx SINE Alu 11 303 -9 1654 141 41 26 chr9 115352211 115352480 -26918964 + AluJo SINE Alu 21 293 -19 339 317 157 34 chr9 115352486 115353062 -26918382 + L2 LINE L2 2377 3020 -252 515 159 35 44 chr9 115353098 115353137 -26918307 - L1MB3 LINE L1 -2 6181 6143 2234 122 0 6 chr9 115353137 115353449 -26917995 - AluSq SINE Alu -3 310 1 515 159 35 44 chr9 115353449 115353522 -26917922 - L1MB3 LINE L1 -40 6143 6070 2560 68 0 0 chr9 115353523 115353856 -26917588 + AluY SINE Alu 2 334 0 799 145 26 7 chr9 115353856 115354008 -26917436 - L1MB3 LINE L1 -101 6082 5928 238 261 116 0 chr9 115354070 115354139 -26917305 + L2 LINE L2 3229 3305 -8 1752 154 19 29 chr9 115355289 115355601 -26915843 + AluJb SINE Alu 1 309 -3 214 269 0 0 chr9 115355748 115355800 -26915644 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 2289 94 0 7 chr9 115355904 115356201 -26915243 - AluSq SINE Alu -18 295 1 257 195 0 110 chr9 115356244 115356326 -26915118 + L2 LINE L2 3196 3268 -4 430 270 73 51 chr9 115356480 115356617 -26914827 - MIR SINE MIR -116 146 7 2042 139 3 0 chr9 115357004 115357299 -26914145 + AluSx SINE Alu 1 296 -16 369 0 0 0 chr9 115357423 115357464 -26913980 + (TG)n Simple_repeat Simple_repeat 2 42 0 3109 192 33 85 chr9 115357514 115358083 -26913361 - L1ME1 LINE L1 -6 6160 5563 861 129 0 95 chr9 115358083 115358230 -26913214 - FLAM_C SINE Alu 0 133 1 3109 192 33 85 chr9 115358230 115358372 -26913072 - L1ME1 LINE L1 -603 5563 5415 336 167 0 0 chr9 115358372 115358420 -26913024 - MER66B LTR ERV1 -141 345 298 3109 192 33 85 chr9 115358420 115358491 -26912953 - L1ME1 LINE L1 -751 5415 5342 2132 123 14 0 chr9 115358491 115358783 -26912661 - AluSx SINE Alu -16 296 1 3109 192 33 85 chr9 115358783 115358908 -26912536 - L1ME1 LINE L1 -824 5342 5212 764 198 0 0 chr9 115358908 115359024 -26912420 + FLAM_C SINE Alu 2 117 -16 447 35 0 0 chr9 115359024 115359081 -26912363 + (CA)n Simple_repeat Simple_repeat 2 58 0 3109 192 33 85 chr9 115359081 115359288 -26912156 - L1ME1 LINE L1 -952 5214 5106 291 288 0 9 chr9 115359297 115359408 -26912036 - L1ME1 LINE L1 -1739 4407 4298 1104 174 22 121 chr9 115359501 115359914 -26911530 - L1MB7 LINE L1 0 6184 5813 * 4011 190 45 29 chr9 115359909 115359952 -26911492 - L1MB5 LINE L1 0 6174 6133 2192 117 0 0 chr9 115359952 115360251 -26911193 - AluSx SINE Alu -13 299 1 4011 190 45 29 chr9 115360251 115361095 -26910349 - L1MB5 LINE L1 -41 6133 5254 2257 82 21 0 chr9 115361095 115361386 -26910058 + AluSx SINE Alu 1 297 -15 4011 190 45 29 chr9 115361386 115361822 -26909622 - L1MB5 LINE L1 -920 5254 4826 2513 171 43 27 chr9 115361844 115362360 -26909084 + L1MB5 LINE L1 5597 6120 -54 814 224 0 6 chr9 115362370 115362531 -26908913 - MLT1A2 LTR MaLR -214 160 1 1429 248 133 9 chr9 115362617 115363068 -26908376 - HAL1 LINE L1 -604 1903 1397 382 246 154 12 chr9 115363098 115363338 -26908106 - HAL1 LINE L1 -1201 1306 1033 197 156 0 65 chr9 115363404 115363481 -26907963 + CT-rich Low_complexity Low_complexity 1 72 0 358 274 108 67 chr9 115363485 115363857 -26907587 - HAL1 LINE L1 -1479 1028 642 193 217 65 0 chr9 115363940 115363986 -26907458 + MIR3 SINE MIR 120 168 -40 28 0 0 0 chr9 115364052 115364080 -26907364 + AT_rich Low_complexity Low_complexity 1 28 0 1525 143 108 21 chr9 115364232 115364519 -26906925 + AluJb SINE Alu 1 312 0 368 202 53 32 chr9 115364533 115364627 -26906817 + MIR SINE MIR 37 132 -130 197 333 86 12 chr9 115364632 115364713 -26906731 - L2 LINE L2 -32 3281 3195 21 95 0 0 chr9 115365787 115365850 -26905594 + AT_rich Low_complexity Low_complexity 1 63 0 1399 185 80 22 chr9 115366075 115366399 -26905045 + MLT1B LTR MaLR 1 343 -47 609 141 0 0 chr9 115366402 115366487 -26904957 + FLAM_C SINE Alu 35 119 -24 404 96 0 0 chr9 115366509 115366561 -26904883 + MLT1B LTR MaLR 339 390 0 248 258 97 0 chr9 115366740 115366826 -26904618 - MIR3 SINE MIR -39 169 73 1689 158 124 17 chr9 115366903 115367258 -26904186 + LTR54B LTR ERV1 104 496 -2 880 276 64 21 chr9 115367354 115367637 -26903807 - MER21-int LTR ERV1 -2291 4467 1267 284 146 219 24 chr9 115367638 115367720 -26903724 - MER67D LTR ERV1 -289 225 128 698 235 19 12 chr9 115367859 115368021 -26903423 - MER21-int LTR ERV1 -4104 1019 857 1397 183 7 121 chr9 115368125 115368511 -26902933 - MER21-int LTR ERV1 -6692 845 511 1874 139 38 0 chr9 115368511 115368798 -26902646 + AluSg SINE Alu 1 298 -12 1397 183 7 121 chr9 115368798 115368842 -26902602 - MER21-int LTR ERV1 -7026 511 464 660 9 37 28 chr9 115368890 115368997 -26902447 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 2368 152 98 82 chr9 115368997 115369800 -26901644 + MER21B LTR ERV1 27 862 -1 1432 151 10 93 chr9 115369858 115370149 -26901295 - AluJo SINE Alu -45 267 1 1584 223 57 20 chr9 115370204 115370658 -26900786 - L1M4 LINE L1 -1840 4306 3836 773 195 16 0 chr9 115370663 115370791 -26900653 - FLAM_C SINE Alu -3 130 1 25 31 0 0 chr9 115370791 115370823 -26900621 + AT_rich Low_complexity Low_complexity 1 32 0 5046 214 52 115 chr9 115370899 115371850 -26899594 + L1M3b LINE L1 16 1025 -5326 2269 91 7 7 chr9 115371850 115372148 -26899296 - AluSq SINE Alu -15 298 1 5046 214 52 115 chr9 115372148 115372512 -26898932 + L1M3b LINE L1 1025 1410 -4941 2530 78 0 0 chr9 115372512 115372819 -26898625 - AluY SINE Alu -4 307 1 5046 214 52 115 chr9 115372819 115373339 -26898105 + L1M3b LINE L1 1410 1658 -4693 2198 129 3 3 chr9 115373339 115373650 -26897794 + AluSp SINE Alu 1 311 -2 5046 214 52 115 chr9 115373650 115374077 -26897367 + L1M3b LINE L1 1658 2110 -4241 1875 186 24 40 chr9 115374134 115374505 -26896939 + MLT1A1 LTR MaLR 1 365 0 2297 95 0 3 chr9 115374515 115374820 -26896624 - AluSg SINE Alu -3 307 4 2319 92 0 0 chr9 115374990 115375283 -26896161 + AluY SINE Alu 1 293 -18 296 286 51 0 chr9 115375315 115375413 -26896031 - L1M4 LINE L1 -2291 3855 3753 1780 130 51 7 chr9 115375448 115375753 -26895691 - AluY SINE Alu 0 311 1 815 173 8 0 chr9 115375757 115375884 -26895560 - FLAM_C SINE Alu -4 129 2 1397 243 49 35 chr9 115375959 115376430 -26895014 - L1M4 LINE L1 -2978 3168 2688 1642 154 21 76 chr9 115376430 115376587 -26894857 + AluJo SINE Alu 1 132 -180 2435 94 0 0 chr9 115376587 115376896 -26894548 + AluSc SINE Alu 1 309 0 1642 154 21 76 chr9 115376896 115377068 -26894376 + AluJo SINE Alu 132 312 0 1397 243 49 35 chr9 115377068 115377106 -26894338 - L1M4 LINE L1 -3458 2688 2652 1794 172 0 10 chr9 115377265 115377568 -26893876 - AluJo SINE Alu -12 300 1 1701 178 26 23 chr9 115377591 115377939 -26893505 - L1MB8 LINE L1 -1 6177 5829 1394 131 128 106 chr9 115377939 115378066 -26893378 - MER73 LTR ERVL -1 643 520 2032 131 3 13 chr9 115378066 115378371 -26893073 + AluSx SINE Alu 1 302 -10 1394 131 128 106 chr9 115378371 115378470 -26892974 - MER73 LTR ERVL -124 520 425 1545 170 0 7 chr9 115378470 115378766 -26892678 + AluJb SINE Alu 13 306 0 1394 131 128 106 chr9 115378766 115378897 -26892547 - MER73 LTR ERVL -219 425 276 962 170 0 12 chr9 115378901 115379072 -26892372 - AluJo SINE Alu -131 181 13 3926 145 18 33 chr9 115379516 115380184 -26891260 - L1MB2 LINE L1 -5 6166 5509 921 244 45 20 chr9 115380657 115380903 -26890541 + MIR SINE MIR 6 257 -5 25 0 0 0 chr9 115382210 115382235 -26889209 + GC_rich Low_complexity Low_complexity 1 25 0 321 26 0 0 chr9 115382760 115382798 -26888646 + (TG)n Simple_repeat Simple_repeat 2 39 0 1717 185 11 3 chr9 115385802 115386089 -26885355 - AluJo SINE Alu -23 289 1 213 65 0 0 chr9 115386370 115386401 -26885043 + (T)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr9 115386780 115386801 -26884643 + AT_rich Low_complexity Low_complexity 1 21 0 2226 177 18 5 chr9 115386939 115387324 -26884120 - MLT1B LTR MaLR 0 390 1 218 195 0 0 chr9 115387351 115387392 -26884052 + (CATA)n Simple_repeat Simple_repeat 1 41 0 1537 187 17 23 chr9 115387576 115387875 -26883569 - AluJb SINE Alu -15 297 1 585 348 43 4 chr9 115388061 115388340 -26883104 + L2 LINE L2 2224 2513 -801 464 276 152 16 chr9 115388427 115388677 -26882767 - HAL1b LINE L1 -614 734 451 1122 242 14 0 chr9 115388677 115388892 -26882552 - MER58A DNA MER1_type 0 224 7 395 276 87 80 chr9 115389031 115389307 -26882137 - HAL1b LINE L1 -1043 1303 1030 1700 163 35 3 chr9 115389307 115389589 -26881855 - AluJb SINE Alu -19 293 3 395 276 87 80 chr9 115389589 115389826 -26881618 - HAL1b LINE L1 -1316 1030 58 1096 180 35 5 chr9 115389836 115390036 -26881408 - AluJb SINE Alu -106 206 1 938 216 103 66 chr9 115390273 115390592 -26880852 + L1ME3A LINE L1 5424 5754 -416 473 208 114 25 chr9 115390813 115391001 -26880443 + MLT1H1 LTR MaLR 341 545 -4 1581 207 42 30 chr9 115391004 115391410 -26880034 + L1ME3A LINE L1 5760 6170 0 1009 147 29 76 chr9 115391859 115392009 -26879435 - L1MD2 LINE L1 -16 6343 6206 2125 158 15 55 chr9 115392009 115392413 -26879031 + MLT1B LTR MaLR 3 390 0 1009 147 29 76 chr9 115392413 115392500 -26878944 - L1MD2 LINE L1 -153 6206 6117 4126 154 39 26 chr9 115393448 115394175 -26877269 - L1MA5 LINE L1 0 6300 5565 2561 72 0 0 chr9 115394504 115394811 -26876633 - AluY SINE Alu -4 307 1 23 0 0 0 chr9 115394915 115394938 -26876506 + AT_rich Low_complexity Low_complexity 1 23 0 2085 106 11 0 chr9 115394938 115395222 -26876222 - AluSx SINE Alu -25 287 1 951 128 0 0 chr9 115395280 115395413 -26876031 - FLAM_C SINE Alu 0 133 1 1625 169 0 59 chr9 115395650 115395970 -26875474 + AluJo SINE Alu 1 301 -11 1537 179 0 26 chr9 115396014 115396282 -26875162 + AluJo SINE Alu 35 295 -17 234 296 29 70 chr9 115396801 115396973 -26874471 + L1ME4a LINE L1 5383 5547 -574 317 222 74 0 chr9 115396998 115397106 -26874338 - L1ME3A LINE L1 -14 6156 6041 239 200 0 86 chr9 115397297 115397367 -26874077 - L1ME3A LINE L1 -588 5576 5513 594 190 60 0 chr9 115397535 115397651 -26873793 + MER58B DNA MER1_type 219 341 0 249 289 0 0 chr9 115397651 115397727 -26873717 + L1ME4a LINE L1 5698 5773 -2035 1194 273 34 85 chr9 115397777 115398195 -26873249 - L2 LINE L2 -5 3308 2915 1552 128 143 4 chr9 115398195 115398460 -26872984 + AluJo SINE Alu 1 302 0 1194 273 34 85 chr9 115398460 115398572 -26872872 - L2 LINE L2 -398 2915 2799 277 194 90 0 chr9 115398678 115398745 -26872699 + L1ME4a LINE L1 5957 6029 -92 189 0 0 0 chr9 115398749 115398770 -26872674 + (TA)n Simple_repeat Simple_repeat 1 21 0 298 245 31 112 chr9 115398981 115399012 -26872432 - MIR3 SINE MIR -20 188 156 2173 113 0 7 chr9 115399012 115399312 -26872132 - AluSx SINE Alu -14 298 1 298 245 31 112 chr9 115399312 115399378 -26872066 - MIR3 SINE MIR -52 156 99 222 174 0 0 chr9 115399598 115399644 -26871800 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1368 170 62 20 chr9 115399651 115400051 -26871393 - L1MA4A LINE L1 -23 6277 5818 711 216 175 5 chr9 115400072 115400266 -26871178 + MIR SINE MIR 7 233 -29 2364 68 0 0 chr9 115400998 115401298 -26870146 + AluY SINE Alu 1 300 0 1524 204 10 25 chr9 115402163 115402477 -26868967 - AluJo SINE Alu -3 309 1 699 205 0 0 chr9 115402576 115402740 -26868704 - FLAM_C SINE Alu 0 180 17 1946 91 15 8 chr9 115404021 115404284 -26867160 - AluSx SINE Alu -7 305 41 313 325 106 12 chr9 115404325 115404485 -26866959 + L1M4 LINE L1 4039 4213 -1933 278 206 40 119 chr9 115405044 115405170 -26866274 + MIR SINE MIR 134 249 -13 689 266 119 52 chr9 115405508 115406030 -26865414 - L2 LINE L2 -129 3184 1253 * 968 167 52 23 chr9 115406006 115406180 -26865264 + MER5A DNA MER1_type 11 189 0 391 268 86 5 chr9 115406180 115406358 -26865086 - L2 LINE L2 -2028 1286 996 2543 232 98 32 chr9 115406364 115407395 -26864049 + L1ME2 LINE L1 2960 4058 -2088 327 280 73 86 chr9 115407419 115407651 -26863793 - L2 LINE L2 0 3272 3044 1240 131 0 0 chr9 115407653 115407828 -26863616 - AluSg/x SINE Alu -4 308 134 2583 60 0 0 chr9 115407828 115408128 -26863316 - AluSx SINE Alu -12 300 1 195 257 162 0 chr9 115408161 115408235 -26863209 - L2 LINE L2 -274 2998 2913 21 36 0 0 chr9 115408499 115408527 -26862917 + GC_rich Low_complexity Low_complexity 1 28 0 6914 57 5 60 chr9 115408578 115409920 -26861524 + SVA Other Other 393 1386 0 360 263 6 74 chr9 115410027 115410202 -26861242 + L1ME2 LINE L1 4165 4327 -1819 680 147 0 0 chr9 115410202 115410304 -26861140 + AluJo SINE Alu 29 130 -182 1655 216 37 7 chr9 115410305 115410759 -26860685 + L1ME2 LINE L1 4321 4788 -1358 2168 155 11 8 chr9 115410762 115411143 -26860301 - MER57A LTR ERV1 0 403 22 25 75 0 0 chr9 115411145 115411198 -26860246 + AT_rich Low_complexity Low_complexity 1 53 0 741 186 12 12 chr9 115411206 115411367 -26860077 + L1ME2 LINE L1 4795 4955 -1191 1626 193 91 16 chr9 115411414 115412083 -26859361 + L1ME2 LINE L1 4943 5663 -503 515 191 0 0 chr9 115412083 115412177 -26859267 + AluJo SINE Alu 136 229 -83 1607 215 21 49 chr9 115412238 115412774 -26858670 + L1ME2 LINE L1 5652 6332 -2 1805 158 0 50 chr9 115412951 115413254 -26858190 - AluJo SINE Alu -22 290 3 240 226 0 97 chr9 115414849 115414942 -26856502 + L2 LINE L2 3180 3263 -9 26 64 0 0 chr9 115415071 115415118 -26856326 + AT_rich Low_complexity Low_complexity 1 47 0 225 0 0 0 chr9 115415211 115415236 -26856208 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1733 171 3 18 chr9 115415240 115415526 -26855918 - AluJo SINE Alu -30 282 1 21 36 0 0 chr9 115415538 115415566 -26855878 + AT_rich Low_complexity Low_complexity 1 28 0 245 345 21 0 chr9 115415588 115415733 -26855711 - L1M4 LINE L1 -3324 2822 2675 255 152 45 15 chr9 115415905 115415971 -26855473 - HAL1 LINE L1 -868 1639 1572 2260 78 7 0 chr9 115415974 115416283 -26855161 - AluSp SINE Alu 0 311 1 1323 139 0 5 chr9 115417264 115417451 -26853993 + AluJb SINE Alu 85 270 -42 216 0 0 0 chr9 115417457 115417481 -26853963 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 630 120 0 0 chr9 115418466 115418566 -26852878 - L1MB3 LINE L1 -7 6176 6077 691 184 77 0 chr9 115418624 115418792 -26852652 + MER3 DNA MER1_type 1 181 -28 765 33 0 0 chr9 115419931 115420023 -26851421 + (TTC)n Simple_repeat Simple_repeat 2 93 0 766 162 0 0 chr9 115420025 115420142 -26851302 - FLAM_C SINE Alu -16 117 1 1260 174 157 53 chr9 115420222 115420270 -26851174 - MSTD LTR MaLR -2 394 352 1981 142 28 0 chr9 115420270 115420558 -26850886 - AluSx SINE Alu -16 296 1 1260 174 157 53 chr9 115420558 115420866 -26850578 - MSTD LTR MaLR -44 352 1 273 246 0 0 chr9 115421152 115421209 -26850235 - MER82 DNA MER2_type -596 57 1 458 333 140 22 chr9 115421348 115421663 -26849781 - L2 LINE L2 -337 2977 2626 2086 137 0 13 chr9 115421663 115421976 -26849468 + AluJb SINE Alu 1 309 -3 2076 121 14 0 chr9 115422541 115422831 -26848613 - AluSx SINE Alu -18 294 1 192 397 0 0 chr9 115422834 115422912 -26848532 + L2 LINE L2 3229 3306 -7 264 233 178 11 chr9 115423060 115423150 -26848294 - L2 LINE L2 0 3313 3209 364 125 28 28 chr9 115423236 115423308 -26848136 - L1MC2 LINE L1 -14 6330 6259 3469 174 73 30 chr9 115423308 115423855 -26847589 - L1MC3 LINE L1 -113 7672 7077 2525 63 0 0 chr9 115423855 115424155 -26847289 - AluY SINE Alu -11 300 1 3469 174 73 30 chr9 115424155 115424428 -26847016 - L1MC3 LINE L1 -708 7077 6817 2397 81 7 0 chr9 115425120 115425427 -26846017 + AluSp SINE Alu 2 310 -3 21 0 0 0 chr9 115425540 115425561 -26845883 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr9 115426305 115426351 -26845093 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr9 115426965 115427000 -26844444 + AT_rich Low_complexity Low_complexity 1 35 0 1773 124 55 68 chr9 115427227 115427298 -26844146 - THE1C LTR MaLR 0 375 305 2161 80 6 49 chr9 115427298 115427623 -26843821 + AluY SINE Alu 1 311 0 1773 124 55 68 chr9 115427623 115427931 -26843513 - THE1C LTR MaLR -70 305 1 763 235 18 12 chr9 115427998 115428164 -26843280 + MIR SINE MIR 1 167 -95 483 275 80 56 chr9 115428310 115428549 -26842895 - L1MC/D LINE L1 -748 5398 5280 2280 108 3 3 chr9 115428549 115428856 -26842588 - AluSq SINE Alu -6 307 1 483 275 80 56 chr9 115428856 115428967 -26842477 - L1MC/D LINE L1 -866 5280 5173 4908 140 34 12 chr9 115428983 115429888 -26841556 - L1MA8 LINE L1 -3 6288 5364 317 213 0 0 chr9 115430383 115430444 -26841000 - MER58 DNA MER1_type -6 2414 2354 244 183 113 78 chr9 115430523 115430638 -26840806 + L1ME LINE L1 4779 4897 -1249 1080 128 12 18 chr9 115430652 115430816 -26840628 + FRAM SINE Alu 4 166 -10 256 265 81 42 chr9 115430816 115431076 -26840368 + L1ME LINE L1 4960 5229 -917 243 88 0 0 chr9 115431076 115431110 -26840334 + (TCCCC)n Simple_repeat Simple_repeat 4 37 0 1971 145 26 3 chr9 115431110 115431413 -26840031 - AluSx SINE Alu -2 310 1 831 229 48 27 chr9 115431452 115431753 -26839691 + L1ME LINE L1 5257 5588 -574 364 293 93 76 chr9 115432003 115432071 -26839373 + L1M4 LINE L1 2132 2197 -3949 1902 126 0 66 chr9 115432071 115432389 -26839055 + AluJb SINE Alu 11 307 -5 364 293 93 76 chr9 115432389 115432781 -26838663 + L1M4 LINE L1 2197 2600 -3546 505 167 21 0 chr9 115432799 115432895 -26838549 - MIR SINE MIR -1 261 164 3597 173 38 25 chr9 115432907 115433676 -26837768 + L1MB8 LINE L1 5341 6119 -59 1922 133 4 4 chr9 115433724 115434003 -26837441 - AluSx SINE Alu -33 279 1 252 216 32 56 chr9 115434388 115434513 -26836931 + L1MC4 LINE L1 7902 8023 -19 28 29 0 0 chr9 115434573 115434608 -26836836 + AT_rich Low_complexity Low_complexity 1 35 0 1611 184 16 32 chr9 115434717 115435032 -26836412 - AluJb SINE Alu -2 310 1 249 239 159 34 chr9 115435051 115435227 -26836217 - L1M4 LINE L1 -1869 4277 4080 22 35 0 0 chr9 115435353 115435382 -26836062 + AT_rich Low_complexity Low_complexity 1 29 0 2041 126 16 19 chr9 115435534 115435844 -26835600 + AluSx SINE Alu 1 309 -3 234 0 0 0 chr9 115437239 115437265 -26834179 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2076 97 4 4 chr9 115437577 115437856 -26833588 - AluSp SINE Alu -5 308 30 263 243 43 0 chr9 115438264 115438334 -26833110 - MIR3 SINE MIR -16 192 120 392 358 68 27 chr9 115438363 115438511 -26832933 + L2 LINE L2 3104 3257 -15 195 42 0 0 chr9 115438516 115438540 -26832904 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 23 33 0 0 chr9 115438907 115438937 -26832507 + AT_rich Low_complexity Low_complexity 1 30 0 207 69 0 0 chr9 115439830 115439859 -26831585 + (T)n Simple_repeat Simple_repeat 1 29 0 2164 150 5 30 chr9 115440076 115440482 -26830962 + MER41B LTR ERV1 113 508 -127 401 136 0 0 chr9 115440482 115440548 -26830896 - Alu SINE Alu -5 307 242 325 177 9 43 chr9 115440548 115440664 -26830780 + MER41A LTR ERV1 395 466 -12 247 331 55 55 chr9 115440760 115440905 -26830539 + L2 LINE L2 2946 3090 -182 822 124 88 0 chr9 115440969 115441106 -26830338 - AluSg/x SINE Alu -24 286 138 2121 130 3 7 chr9 115441107 115441414 -26830030 + AluSx SINE Alu 1 306 -6 4776 129 54 31 chr9 115441414 115442011 -26829433 + MER4D LTR ERV1 19 644 -259 1676 152 69 0 chr9 115442011 115442301 -26829143 - AluJb SINE Alu -2 310 1 4776 129 54 31 chr9 115442301 115442568 -26828876 + MER4D LTR ERV1 644 903 0 371 303 67 8 chr9 115442617 115442736 -26828708 + L2 LINE L2 3147 3272 0 1675 177 3 21 chr9 115442785 115443112 -26828332 + MLT1B LTR MaLR 65 385 -5 367 350 169 20 chr9 115443515 115443735 -26827709 - L2 LINE L2 0 3272 3086 1051 153 81 34 chr9 115443735 115443944 -26827500 + MER20 DNA MER1_type 1 219 0 367 350 169 20 chr9 115443944 115444114 -26827330 - L2 LINE L2 -186 3086 2824 1966 182 141 61 chr9 115444485 115445045 -26826399 - MER77 LTR ERV1 0 605 1 1803 164 38 27 chr9 115445110 115445482 -26825962 - L1MB3 LINE L1 -2 6181 5806 188 322 51 0 chr9 115447001 115447060 -26824384 + MIR SINE MIR 6 67 -195 498 176 7 22 chr9 115447069 115447205 -26824239 + CT-rich Low_complexity Low_complexity 5 138 0 1445 159 78 22 chr9 115447213 115447483 -26823961 - AluJb SINE Alu -27 285 1 570 217 108 18 chr9 115447483 115447649 -26823795 + MIR SINE MIR 61 241 -21 213 230 253 23 chr9 115447837 115447924 -26823520 + L2 LINE L2 3207 3313 0 430 261 102 97 chr9 115447947 115448230 -26823214 + L1ME LINE L1 5429 5716 -405 2344 70 0 14 chr9 115448230 115448516 -26822928 + AluSg SINE Alu 1 282 -28 430 261 102 97 chr9 115448516 115448615 -26822829 + L1ME LINE L1 5716 5813 -308 284 263 22 73 chr9 115448657 115448794 -26822650 + MER5B DNA MER1_type 49 178 0 193 274 20 0 chr9 115448817 115448868 -26822576 + MER5B DNA MER1_type 127 178 0 986 201 113 80 chr9 115449466 115449805 -26821639 - MSTC LTR MaLR 0 428 71 2152 114 0 14 chr9 115449805 115450102 -26821342 + AluSq SINE Alu 1 293 -20 986 201 113 80 chr9 115450102 115450176 -26821268 - MSTC LTR MaLR -357 71 1 830 159 0 0 chr9 115450521 115450647 -26820797 - FLAM_C SINE Alu -17 126 1 298 295 98 27 chr9 115450984 115450996 -26820448 - L2 LINE L2 0 3313 3303 1306 191 125 4 chr9 115450996 115451268 -26820176 - AluJb SINE Alu -7 305 1 298 295 98 27 chr9 115451268 115451367 -26820077 - L2 LINE L2 -10 3303 3194 2422 55 3 3 chr9 115451957 115452247 -26819197 + AluSc SINE Alu 1 290 -19 333 289 70 14 chr9 115452259 115452401 -26819043 + L1M4 LINE L1 4681 4830 -1316 297 232 0 0 chr9 115453176 115453245 -26818199 - L2 LINE L2 -843 2471 2403 586 236 138 0 chr9 115453374 115453577 -26817867 - L2 LINE L2 -1225 2089 1859 23 0 0 0 chr9 115453993 115454016 -26817428 + AT_rich Low_complexity Low_complexity 1 23 0 550 165 0 0 chr9 115454083 115454168 -26817276 - FLAM SINE Alu -15 128 44 1595 188 40 13 chr9 115454198 115454502 -26816942 - AluJo SINE Alu 0 312 1 28 29 0 0 chr9 115454573 115454608 -26816836 + AT_rich Low_complexity Low_complexity 1 35 0 274 288 46 105 chr9 115454856 115455009 -26816435 + L2 LINE L2 2910 3053 -219 2512 64 0 0 chr9 115455069 115455366 -26816078 - AluY SINE Alu -14 297 1 210 333 32 0 chr9 115455445 115455508 -26815936 + L2 LINE L2 3154 3218 -54 2080 117 4 0 chr9 115455585 115455895 -26815549 + AluSq SINE Alu 1 311 0 1003 221 30 5 chr9 115456250 115456449 -26814995 - MIR SINE MIR -53 209 6 845 161 0 0 chr9 115456838 115456968 -26814476 - FLAM_C SINE Alu -3 140 11 453 76 0 0 chr9 115457033 115457099 -26814345 + (TC)n Simple_repeat Simple_repeat 2 67 0 833 121 0 26 chr9 115457113 115457229 -26814215 - AluJb SINE Alu -186 126 14 1951 253 32 28 chr9 115457292 115457909 -26813535 - L1M4 LINE L1 -1546 4600 3981 7324 148 29 5 chr9 115507909 115509101 -26762343 - Ricksha DNA DNA -1903 1343 123 396 230 98 46 chr9 115509110 115509284 -26762160 - MLT1J LTR MaLR -328 183 1 660 146 49 24 chr9 115509326 115509449 -26761995 + FLAM_C SINE Alu 5 130 -3 269 36 54 36 chr9 115509458 115509514 -26761930 + (TAAAAA)n Simple_repeat Simple_repeat 4 60 0 209 243 126 78 chr9 115509663 115509766 -26761678 - MIR3 SINE MIR -87 121 14 191 36 36 0 chr9 115509973 115510001 -26761443 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2391 75 3 0 chr9 115511246 115511540 -26759904 - AluSp SINE Alu -18 295 1 737 237 127 13 chr9 115512704 115512932 -26758512 - MIR SINE MIR 0 262 9 194 289 19 0 chr9 115513149 115513201 -26758243 + L2 LINE L2 3254 3306 -7 427 316 67 88 chr9 115513330 115513971 -26757473 - L2 LINE L2 0 3272 2638 1575 155 25 40 chr9 115514243 115514521 -26756923 + AluJo SINE Alu 1 274 -38 22 0 0 0 chr9 115514541 115514563 -26756881 + AT_rich Low_complexity Low_complexity 1 22 0 667 276 40 18 chr9 115516305 115516530 -26754914 - MIR SINE MIR -30 232 3 253 283 97 41 chr9 115516532 115516677 -26754767 - L2 LINE L2 -1337 1977 1825 263 229 14 57 chr9 115516908 115516978 -26754466 + MER5A DNA MER1_type 8 74 -115 443 265 103 54 chr9 115518427 115518650 -26752794 - L2 LINE L2 -1 3312 3079 198 328 57 16 chr9 115518850 115518972 -26752472 + L2 LINE L2 2905 3031 -241 28 0 0 0 chr9 115520339 115520367 -26751077 + AT_rich Low_complexity Low_complexity 1 28 0 387 159 53 0 chr9 115520368 115520538 -26750906 + (TA)n Simple_repeat Simple_repeat 1 179 0 789 333 107 13 chr9 115521077 115521543 -26749901 + L2 LINE L2 2804 3313 0 1916 121 85 0 chr9 115522529 115522810 -26748634 + AluSx SINE Alu 2 306 -6 897 262 62 113 chr9 115523070 115523681 -26747763 + HAL1b LINE L1 245 824 -524 1510 151 0 8 chr9 115523962 115524201 -26747243 + AluJb SINE Alu 1 237 -75 742 191 0 0 chr9 115524213 115524344 -26747100 + FLAM_A SINE Alu 1 131 -2 1827 177 0 0 chr9 115525013 115525307 -26746137 - AluJo SINE Alu -18 294 1 587 305 101 58 chr9 115525433 115526089 -26745355 + L1ME3A LINE L1 2745 3428 -2718 468 277 105 73 chr9 115526259 115526973 -26744471 + L1ME3A LINE L1 3698 4434 -1712 397 306 77 55 chr9 115527038 115527440 -26744004 + L1ME3A LINE L1 4488 4898 -1248 23 54 0 0 chr9 115527490 115527527 -26743917 + AT_rich Low_complexity Low_complexity 1 37 0 1370 181 45 45 chr9 115527582 115527869 -26743575 + AluJo SINE Alu 3 289 -13 2776 246 55 12 chr9 115528145 115529250 -26742194 + L1ME3A LINE L1 4976 6169 -1 1515 104 5 0 chr9 115529662 115529864 -26741580 + AluSg/x SINE Alu 97 299 -13 624 223 84 28 chr9 115529864 115530079 -26741365 - Charlie2a DNA MER1_type -1909 953 727 283 258 32 11 chr9 115530065 115530158 -26741286 - Charlie2a DNA MER1_type -2303 479 385 * 309 324 20 0 chr9 115530313 115530415 -26741029 - Charlie2a DNA MER1_type -2715 147 44 195 250 0 23 chr9 115531394 115531438 -26740006 + MER5A DNA MER1_type 126 168 -21 32 0 0 0 chr9 115533441 115533473 -26737971 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr9 115533753 115533787 -26737657 + AT_rich Low_complexity Low_complexity 1 34 0 303 230 54 47 chr9 115535220 115535368 -26736076 - L1ME4a LINE L1 -38 6083 5935 26 0 0 0 chr9 115536031 115536057 -26735387 + AT_rich Low_complexity Low_complexity 1 26 0 1691 131 33 4 chr9 115536181 115536426 -26735018 - AluJo SINE Alu -30 282 31 619 257 146 6 chr9 115537630 115537867 -26733577 - MIR SINE MIR -3 259 8 237 188 21 0 chr9 115539259 115539307 -26732137 - MIR3 SINE MIR -9 199 151 1782 153 0 43 chr9 115539562 115539863 -26731581 - AluJo SINE Alu -16 296 9 22 35 0 0 chr9 115541063 115541092 -26730352 + AT_rich Low_complexity Low_complexity 1 29 0 1985 142 0 13 chr9 115541890 115542192 -26729252 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 115542879 115542900 -26728544 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 115543174 115543208 -26728236 + AT_rich Low_complexity Low_complexity 1 34 0 683 192 0 8 chr9 115544781 115544906 -26726538 + FLAM_C SINE Alu 1 124 -9 25 0 0 0 chr9 115544906 115544931 -26726513 + AT_rich Low_complexity Low_complexity 1 25 0 1761 168 3 29 chr9 115545659 115545975 -26725469 + AluJo SINE Alu 1 308 -4 574 256 57 30 chr9 115546225 115546455 -26724989 - L1ME4a LINE L1 -284 5837 5602 357 281 87 51 chr9 115546543 115546796 -26724648 - L1ME4a LINE L1 -104 6017 5756 550 286 155 35 chr9 115546839 115547576 -26723868 - L1ME4a LINE L1 -543 5578 4771 291 263 26 0 chr9 115547739 115547853 -26723591 - L1ME4a LINE L1 -1539 4607 4491 1621 246 59 55 chr9 115547885 115548601 -26722843 - L1ME3A LINE L1 0 6239 5521 2377 80 0 7 chr9 115548650 115548950 -26722494 - AluSq SINE Alu -15 298 1 461 62 0 0 chr9 115549012 115549076 -26722368 - L1PA13 LINE L1 -19 6144 6081 400 234 29 111 chr9 115549088 115549404 -26722040 - L1ME3A LINE L1 -896 5319 5030 * 1777 269 113 37 chr9 115549403 115549624 -26721820 - L1MEc LINE L1 -2383 3832 3629 405 0 0 0 chr9 115549634 115549679 -26721765 + (TG)n Simple_repeat Simple_repeat 2 46 0 1667 189 3 7 chr9 115549679 115549965 -26721479 - AluJb SINE Alu -25 287 1 1777 269 113 37 chr9 115549965 115550520 -26720924 - L1MEc LINE L1 -2586 3629 3118 196 29 0 57 chr9 115550520 115550555 -26720889 + (TA)n Simple_repeat Simple_repeat 1 33 0 1777 269 113 37 chr9 115550555 115551401 -26720043 - L1MEc LINE L1 -3097 3118 2093 225 325 62 17 chr9 115551628 115551786 -26719658 - L1MEc LINE L1 -4588 1808 1634 2099 109 23 0 chr9 115551786 115552088 -26719356 - AluSq SINE Alu -4 309 1 225 325 62 17 chr9 115552088 115552169 -26719275 - L1MEc LINE L1 -4762 1634 1558 2072 114 7 39 chr9 115552269 115552575 -26718869 + AluSx SINE Alu 5 300 -12 1821 104 50 47 chr9 115552585 115552864 -26718580 + AluSg SINE Alu 7 286 -24 1629 132 21 117 chr9 115552869 115553203 -26718241 + AluJb SINE Alu 3 304 -8 229 217 0 0 chr9 115553304 115553350 -26718094 - L2 LINE L2 -514 2800 2755 4150 124 61 22 chr9 115553376 115554149 -26717295 - L1MB3 LINE L1 -4 6179 5377 915 222 90 70 chr9 115554150 115554493 -26716951 - L2 LINE L2 -602 2712 2363 1616 178 7 14 chr9 115554643 115554929 -26716515 + AluJo SINE Alu 23 306 -6 314 163 33 87 chr9 115554988 115555080 -26716364 - L2 LINE L2 -965 2349 2263 1145 242 97 56 chr9 115555080 115555599 -26715845 - MLT1H1 LTR MaLR 0 555 18 1924 254 45 8 chr9 115555611 115556147 -26715297 - L2 LINE L2 -1046 2268 1713 391 194 41 20 chr9 115556161 115556259 -26715185 - L2 LINE L2 -1774 1540 1441 1774 135 37 30 chr9 115556739 115557036 -26714408 - AluJb SINE Alu -13 299 1 423 292 22 44 chr9 115557582 115557808 -26713636 - MLT1L LTR MaLR -26 589 369 2210 81 3 0 chr9 115558268 115558553 -26712891 - AluY SINE Alu -1 310 25 2413 46 3 43 chr9 115559090 115559413 -26712031 - AluY SINE Alu -1 310 1 4458 180 39 5 chr9 115562371 115563363 -26708081 - L1MB7 LINE L1 0 6184 5155 25 0 0 0 chr9 115564520 115564545 -26706899 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr9 115565050 115565085 -26706359 + AT_rich Low_complexity Low_complexity 1 35 0 509 310 78 55 chr9 115565196 115565683 -26705761 - L1M4 LINE L1 -913 5233 4736 248 221 13 0 chr9 115566411 115566488 -26704956 + (TA)n Simple_repeat Simple_repeat 2 79 0 2250 115 0 0 chr9 115566542 115566847 -26704597 + AluSx SINE Alu 3 307 -5 21 0 0 0 chr9 115567083 115567104 -26704340 + AT_rich Low_complexity Low_complexity 1 21 0 812 294 33 5 chr9 115567125 115567336 -26704108 + MIR SINE MIR 34 250 -12 343 197 0 42 chr9 115567456 115567527 -26703917 + MER5A DNA MER1_type 12 79 -110 1578 64 14 5 chr9 115568206 115568425 -26703019 + L1MA2 LINE L1 6084 6304 0 203 228 70 18 chr9 115568908 115568965 -26702479 + L2 LINE L2 3209 3268 -4 270 219 44 37 chr9 115568982 115569075 -26702369 + MER5A DNA MER1_type 87 189 0 579 254 11 38 chr9 115569103 115569288 -26702156 + LTR67 LTR ERVL 10 189 -368 550 301 77 19 chr9 115569299 115569664 -26701780 + L1ME LINE L1 5416 5801 -361 792 116 23 23 chr9 115569982 115570111 -26701333 + FRAM SINE Alu 29 157 -19 660 309 69 0 chr9 115570155 115570372 -26701072 + MIR SINE MIR 7 238 -24 226 353 57 71 chr9 115571168 115571451 -26699993 - L2 LINE L2 -5 3267 2989 477 295 23 0 chr9 115571949 115572078 -26699366 - L2 LINE L2 0 3313 3182 2267 101 7 13 chr9 115573176 115573483 -26697961 - AluSx SINE Alu -7 305 1 296 242 32 0 chr9 115573876 115573971 -26697473 - HAL1 LINE L1 -171 2336 2239 364 169 39 0 chr9 115574367 115574444 -26697000 + MIR SINE MIR 168 247 -15 460 250 54 18 chr9 115574472 115574640 -26696804 - MER104 DNA MER2_type -3 177 4 381 262 90 0 chr9 115574829 115574974 -26696470 - HAL1 LINE L1 -726 1781 1624 686 184 0 0 chr9 115575004 115575113 -26696331 - FLAM_C SINE Alu -34 109 1 334 292 119 38 chr9 115575162 115575347 -26696097 - HAL1 LINE L1 -1495 1012 813 2125 86 54 0 chr9 115575348 115575628 -26695816 + AluSp SINE Alu 1 295 -18 479 246 232 0 chr9 115576120 115576258 -26695186 + MER5A DNA MER1_type 15 184 -5 2299 99 3 0 chr9 115576381 115576684 -26694760 - AluSq SINE Alu -9 304 1 2347 74 0 3 chr9 115577121 115577417 -26694027 - AluY SINE Alu -16 295 1 964 203 21 21 chr9 115577644 115577836 -26693608 + AluJ SINE Alu 1 192 -120 1592 171 216 24 chr9 115577850 115578300 -26693144 - LTR10A LTR ERV1 -61 548 13 651 152 0 0 chr9 115578307 115578412 -26693032 + AluJ SINE Alu 188 292 -20 764 268 101 9 chr9 115578414 115578642 -26692802 + MIR SINE MIR 8 256 -6 26 0 0 0 chr9 115579171 115579197 -26692247 + AT_rich Low_complexity Low_complexity 1 26 0 184 0 62 31 chr9 115579596 115579628 -26691816 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 646 184 18 0 chr9 115579630 115579744 -26691700 - FLAM_C SINE Alu -27 116 1 396 0 0 0 chr9 115579873 115579917 -26691527 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1713 194 0 0 chr9 115579925 115580203 -26691241 - AluJo SINE Alu -34 278 1 940 165 193 52 chr9 115580299 115580626 -26690818 - L1MB7 LINE L1 -16 6168 5796 1592 176 23 16 chr9 115580741 115581048 -26690396 + AluJo SINE Alu 1 309 -3 371 256 69 54 chr9 115581048 115581445 -26689999 - L1M4 LINE L1 -4869 1673 1326 725 248 72 29 chr9 115581507 115581785 -26689659 - L1MC4 LINE L1 -142 7900 7611 268 275 51 22 chr9 115583695 115583833 -26687611 - HAL1b LINE L1 -739 609 468 676 289 96 99 chr9 115583856 115584472 -26686972 - HAL1 LINE L1 -970 1537 924 276 188 21 0 chr9 115585736 115585784 -26685660 + MIR SINE MIR 34 82 -180 217 226 0 19 chr9 115585797 115585850 -26685594 + L2 LINE L2 3217 3268 -4 * 234 267 219 0 chr9 115585834 115585980 -26685464 + MIR SINE MIR 75 252 -10 2261 112 0 0 chr9 115586414 115586726 -26684718 + AluSx SINE Alu 1 312 0 2135 112 14 3 chr9 115587385 115587680 -26683764 + AluSq SINE Alu 1 298 -15 255 194 60 45 chr9 115588372 115588439 -26683005 - L2 LINE L2 -5 3267 3200 611 188 0 8 chr9 115588850 115588967 -26682477 - MER92B LTR ERV1 -27 609 494 209 269 19 0 chr9 115589038 115589090 -26682354 + MIR SINE MIR 93 145 -63 809 246 0 18 chr9 115589115 115589286 -26682158 + FAM SINE Alu 1 168 -7 333 333 50 13 chr9 115589845 115590004 -26681440 + L1MEd LINE L1 561 725 -5394 373 310 96 13 chr9 115590196 115590435 -26681009 + L1MEc LINE L1 71 329 -6067 304 217 132 9 chr9 115590483 115590589 -26680855 + L1MEc LINE L1 756 874 -5522 3185 244 63 32 chr9 115590611 115591689 -26679755 + L1MEc LINE L1 65 1345 -5051 1851 158 14 3 chr9 115591689 115591981 -26679463 - AluJo SINE Alu -13 299 5 3185 244 63 32 chr9 115591981 115592542 -26678902 + L1MEc LINE L1 1345 1887 -4509 894 236 43 0 chr9 115592607 115592861 -26678583 + L1MEc LINE L1 1531 1795 -4601 2065 220 66 69 chr9 115592882 115593924 -26677520 + L1MEc LINE L1 1881 2888 -3327 2241 111 0 3 chr9 115593924 115594221 -26677223 - AluSx SINE Alu -16 296 1 2065 220 66 69 chr9 115594221 115594459 -26676985 + L1MEc LINE L1 2888 3125 -3090 1416 147 5 0 chr9 115594487 115594691 -26676753 - AluJo SINE Alu -107 205 1 1848 163 16 7 chr9 115595138 115595444 -26676000 - AluJb SINE Alu -3 309 1 307 372 115 71 chr9 115595454 115595863 -26675581 - L2 LINE L2 -21 3251 2825 402 270 14 54 chr9 115595868 115596016 -26675428 - MLT1H LTR MaLR 0 549 408 2086 118 21 0 chr9 115596148 115596437 -26675007 + AluSx SINE Alu 1 295 -17 640 199 135 6 chr9 115596486 115596642 -26674802 - MLT1H LTR MaLR -355 194 19 515 289 54 82 chr9 115597348 115597842 -26673602 - L1 LINE L1 -1879 4267 3787 1811 196 97 71 chr9 115598069 115598615 -26672829 - LTR38B LTR ERV1 -19 591 28 2299 105 3 3 chr9 115598615 115598920 -26672524 + AluSx SINE Alu 1 305 -7 1811 196 97 71 chr9 115598920 115598949 -26672495 - LTR38B LTR ERV1 -582 28 1 563 299 106 77 chr9 115599284 115599628 -26671816 - L1 LINE L1 -2680 3466 3097 1969 112 38 24 chr9 115599628 115599915 -26671529 - AluSx SINE Alu -21 291 1 563 299 106 77 chr9 115599915 115600145 -26671299 - L1 LINE L1 -3049 3097 2875 2222 125 3 3 chr9 115600367 115600680 -26670764 - AluSq SINE Alu 0 313 1 1106 75 0 0 chr9 115601201 115601335 -26670109 + AluY SINE Alu 1 134 -177 2004 46 0 0 chr9 115601335 115601572 -26669872 + AluY SINE Alu 74 310 -1 21 36 0 0 chr9 115604071 115604099 -26667345 + AT_rich Low_complexity Low_complexity 1 28 0 202 277 0 0 chr9 115604949 115604996 -26666448 + (CA)n Simple_repeat Simple_repeat 2 48 0 2297 87 17 0 chr9 115605037 115605335 -26666109 + AluSq SINE Alu 1 303 -10 219 261 0 0 chr9 115605868 115605914 -26665530 + MIR SINE MIR 209 254 -8 185 277 0 21 chr9 115606614 115606661 -26664783 - MIR SINE MIR -164 98 53 379 294 73 49 chr9 115607838 115608042 -26663402 - MIR SINE MIR -32 230 22 1807 73 73 12 chr9 115608513 115608759 -26662685 - AluSx SINE Alu -17 295 35 400 330 0 0 chr9 115608862 115608974 -26662470 - MIR3 SINE MIR -42 166 55 2377 87 3 0 chr9 115609818 115610117 -26661327 + AluSx SINE Alu 1 300 -12 330 246 131 41 chr9 115610119 115610241 -26661203 + HAL1b LINE L1 378 510 -838 24 0 0 0 chr9 115611424 115611448 -26659996 + AT_rich Low_complexity Low_complexity 1 24 0 2022 101 8 0 chr9 115612363 115612630 -26658814 - AluSq SINE Alu -6 307 39 538 229 134 20 chr9 115612669 115612870 -26658574 + L1MC5 LINE L1 7690 7913 -48 2318 103 0 3 chr9 115614076 115614377 -26657067 - AluSq SINE Alu -13 300 1 469 225 62 0 chr9 115614428 115614557 -26656887 + MER113 DNA MER1_type? 1 137 -384 270 159 0 0 chr9 115614573 115614617 -26656827 + MIR SINE MIR 193 236 -26 1716 179 10 3 chr9 115614640 115614930 -26656514 + AluJb SINE Alu 1 292 -20 2543 65 0 0 chr9 115614938 115615245 -26656199 + AluY SINE Alu 3 309 -2 7318 63 7 0 chr9 115615617 115616972 -26654472 - L1PA11 LINE L1 0 6174 4801 232 305 89 64 chr9 115616976 115616989 -26654455 + L2 LINE L2 2360 2371 -943 967 196 10 25 chr9 115616989 115617193 -26654251 - MER105 DNA DNA -2 202 2 232 305 89 64 chr9 115617193 115617739 -26653705 + L2 LINE L2 2371 2933 -381 2344 81 0 37 chr9 115617886 115618209 -26653235 - AluY SINE Alu 0 311 1 1942 138 7 7 chr9 115618501 115618797 -26652647 + AluSq SINE Alu 1 296 -17 752 142 58 17 chr9 115618804 115618924 -26652520 + FLAM_A SINE Alu 1 125 -8 330 164 0 60 chr9 115619317 115619384 -26652060 + MER112 DNA MER1_type 2 64 -196 297 178 65 225 chr9 115619398 115619567 -26651877 - L2 LINE L2 -1 3312 3171 1749 149 0 68 chr9 115619574 115619883 -26651561 + AluJo SINE Alu 1 288 -24 392 243 107 71 chr9 115619915 115620084 -26651360 + MER112 DNA MER1_type 86 260 0 970 153 59 64 chr9 115620424 115620626 -26650818 - AluJb SINE Alu -26 286 86 205 253 72 36 chr9 115621665 115621748 -26649696 - MER5A DNA MER1_type -77 112 27 2225 116 7 3 chr9 115621814 115622117 -26649327 - AluSx SINE Alu -8 304 1 206 302 0 0 chr9 115622654 115622707 -26648737 - L3 LINE CR1 -393 1184 1132 2327 64 0 3 chr9 115623123 115623449 -26647995 + AluY SINE Alu 1 325 0 1834 143 0 74 chr9 115623861 115624197 -26647247 + AluJo SINE Alu 1 311 -1 209 213 21 0 chr9 115624200 115624247 -26647197 + L3b LINE CR1 1536 1583 0 991 121 100 104 chr9 115625032 115625272 -26646172 - L1MA9 LINE L1 -13 6299 6061 194 297 0 47 chr9 115625453 115625517 -26645927 - L2 LINE L2 -542 2772 2712 1664 153 65 0 chr9 115625531 115625806 -26645638 + AluJb SINE Alu 1 293 -19 1213 285 105 9 chr9 115625845 115626406 -26645038 + MLT1L LTR MaLR 1 615 0 769 333 102 41 chr9 115626448 115627050 -26644394 - L2 LINE L2 -687 2627 1956 2205 114 16 3 chr9 115627050 115627358 -26644086 + AluSx SINE Alu 1 312 0 769 333 102 41 chr9 115627358 115627608 -26643836 - L2 LINE L2 -1358 1956 1723 1724 160 20 3 chr9 115627611 115627905 -26643539 - AluJb SINE Alu -12 300 2 1622 159 52 17 chr9 115628079 115628369 -26643075 + AluJo SINE Alu 1 300 -12 1178 209 138 77 chr9 115628472 115629001 -26642443 + MER34B LTR ERV1 4 542 0 2234 85 0 0 chr9 115629115 115629430 -26642014 + AluSx SINE Alu 1 315 0 694 265 122 16 chr9 115630282 115630527 -26640917 + MER102b DNA MER1_type 70 340 -1 234 284 0 0 chr9 115630532 115630599 -26640845 + GA-rich Low_complexity Low_complexity 4 70 0 774 207 0 0 chr9 115631043 115631212 -26640232 + GA-rich Low_complexity Low_complexity 2 170 0 1857 156 0 14 chr9 115631226 115631514 -26639930 - AluJo SINE Alu -28 284 1 3882 197 35 11 chr9 115631826 115632547 -26638897 - MER21B LTR ERV1 -107 756 19 688 134 10 0 chr9 115632550 115632647 -26638797 + AluJo SINE Alu 1 98 -214 428 177 13 0 chr9 115632647 115632726 -26638718 + MER119 DNA MER1_type 419 498 -85 1042 165 16 16 chr9 115632728 115632922 -26638522 + AluJo SINE Alu 103 296 -16 403 284 0 0 chr9 115632952 115633040 -26638404 - MER21B LTR ERV1 -773 90 3 2393 100 0 0 chr9 115633345 115633655 -26637789 + AluY SINE Alu 1 310 -1 21 0 0 0 chr9 115634335 115634356 -26637088 + AT_rich Low_complexity Low_complexity 1 21 0 1638 144 56 46 chr9 115634358 115634663 -26636781 + AluJo SINE Alu 1 308 -4 1945 144 16 7 chr9 115634718 115635023 -26636421 + MER44D DNA MER2_type 32 609 0 2584 220 46 12 chr9 115635180 115635744 -26635700 - MER119 DNA MER1_type 0 583 1 260 67 67 0 chr9 115635839 115635899 -26635545 + (TA)n Simple_repeat Simple_repeat 1 64 0 235 196 54 0 chr9 115635945 115636001 -26635443 + MER116 DNA Mariner 16 74 -6 507 161 0 0 chr9 115636212 115636293 -26635151 + AluJ/FRAM SINE Alu 221 301 -11 1841 110 75 7 chr9 115636367 115636648 -26634796 + AluSq SINE Alu 1 300 -13 1568 159 14 54 chr9 115637097 115637392 -26634052 + AluJo SINE Alu 5 287 -25 186 43 0 0 chr9 115637401 115637424 -26634020 + (CA)n Simple_repeat Simple_repeat 2 24 0 2371 99 0 0 chr9 115637883 115638186 -26633258 - AluSc SINE Alu -4 305 3 297 169 21 71 chr9 115638717 115638762 -26632682 + L1MC3 LINE L1 6689 6735 -1073 860 164 0 15 chr9 115638762 115638896 -26632548 + FLAM_C SINE Alu 1 132 -1 297 169 21 71 chr9 115638896 115638972 -26632472 + L1MC3 LINE L1 6735 6802 -1006 608 131 12 0 chr9 115638982 115639066 -26632378 - AluJ/FLAM SINE Alu -226 86 2 249 234 131 66 chr9 115639093 115639230 -26632214 + L1MC4 LINE L1 6924 7069 -973 2072 159 0 3 chr9 115640152 115640460 -26630984 + AluJb SINE Alu 1 307 -5 21 26 0 26 chr9 115640632 115640644 -26630800 + AT_rich Low_complexity Low_complexity 1 12 -26 1838 164 0 7 chr9 115640644 115640936 -26630508 - AluJb SINE Alu -22 290 1 21 26 0 26 chr9 115640936 115640962 -26630482 + AT_rich Low_complexity Low_complexity 12 38 0 1740 83 0 4 chr9 115641414 115641643 -26629801 + L1M1 LINE L1 5381 5608 -697 1461 161 0 21 chr9 115641643 115641879 -26629565 - AluJo SINE Alu -81 231 1 703 177 44 9 chr9 115642112 115642225 -26629219 - FLAM_C SINE Alu -15 118 2 2134 70 3 90 chr9 115642231 115642564 -26628880 - AluSp SINE Alu 0 306 1 22 0 0 0 chr9 115642566 115642588 -26628856 + AT_rich Low_complexity Low_complexity 1 22 0 227 132 0 0 chr9 115642656 115642694 -26628750 - Alu SINE Alu -3 172 135 219 363 35 35 chr9 115643307 115643420 -26628024 - L2 LINE L2 -43 3229 3117 228 286 16 32 chr9 115643555 115643618 -26627826 - L2 LINE L2 -218 3054 2993 354 317 170 9 chr9 115643642 115643866 -26627578 - L2 LINE L2 -610 2704 2445 826 132 88 0 chr9 115643886 115644022 -26627422 - MLT1D LTR MaLR 0 505 358 826 163 0 0 chr9 115644023 115644146 -26627298 - AluJb SINE Alu -12 300 178 23 33 0 0 chr9 115644155 115644185 -26627259 + AT_rich Low_complexity Low_complexity 1 30 0 444 303 127 7 chr9 115644697 115644936 -26626508 + MIR SINE MIR 3 262 0 1488 154 62 65 chr9 115646215 115646507 -26624937 + AluJo SINE Alu 1 291 -21 1746 205 166 4 chr9 115647203 115648325 -26623119 + L1ME1 LINE L1 6 1322 -4758 1707 216 102 19 chr9 115648326 115648711 -26622733 + L1ME1 LINE L1 5115 5466 -634 229 155 0 121 chr9 115648711 115648737 -26622707 + AluSp SINE Alu 117 135 -168 1463 174 17 3 chr9 115648737 115649025 -26622419 + AluJo SINE Alu 1 292 -20 1707 216 102 19 chr9 115648769 115649034 -26622410 + L1ME1 LINE L1 5466 5637 -463 2226 82 24 0 chr9 115649034 115649326 -26622118 + AluSq SINE Alu 1 299 -14 1707 216 102 19 chr9 115649326 115649622 -26621822 + L1ME1 LINE L1 5637 5907 -193 24 67 0 0 chr9 115650017 115650062 -26621382 + AT_rich Low_complexity Low_complexity 1 45 0 3935 79 59 122 chr9 115650098 115650437 -26621007 - Tigger3(Golem) DNA MER2_type -3 3025 2666 510 61 0 0 chr9 115650437 115650503 -26620941 + (CA)n Simple_repeat Simple_repeat 2 67 0 3935 79 59 122 chr9 115650503 115650815 -26620629 - Tigger3(Golem) DNA MER2_type -362 2666 2432 2319 84 3 0 chr9 115650815 115651112 -26620332 + AluSp SINE Alu 1 298 -15 3935 79 59 122 chr9 115651112 115651260 -26620184 - Tigger3(Golem) DNA MER2_type -596 2432 2276 1426 165 41 8 chr9 115651393 115651636 -26619808 + MSTB LTR MaLR 176 426 0 2035 203 27 29 chr9 115651636 115651664 -26619780 + L1MC3 LINE L1 7305 7332 -453 2316 91 0 3 chr9 115651664 115651972 -26619472 + AluSq SINE Alu 1 307 -6 2035 203 27 29 chr9 115651972 115652425 -26619019 + L1MC3 LINE L1 7332 7785 0 1984 118 0 29 chr9 115653039 115653345 -26618099 - AluSx SINE Alu -15 297 1 667 157 102 68 chr9 115653954 115654101 -26617343 - MER106B DNA MER1_type -907 152 1 568 282 165 4 chr9 115654206 115654461 -26616983 - MLT1L LTR MaLR -10 605 310 307 239 56 0 chr9 115654644 115654715 -26616729 + MIR3 SINE MIR 87 161 -47 1810 160 27 0 chr9 115654789 115655083 -26616361 - AluJb SINE Alu -10 302 1 257 0 30 0 chr9 115655107 115655140 -26616304 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1381 262 65 0 chr9 115655164 115655531 -26615913 - L1ME3A LINE L1 -180 5990 5600 2063 124 0 0 chr9 115655544 115655842 -26615602 - AluSq SINE Alu -15 298 1 2302 79 0 16 chr9 115656250 115656566 -26614878 + AluY SINE Alu 1 311 0 867 67 8 25 chr9 115656622 115656742 -26614702 - L1MA3 LINE L1 -2 6303 6186 2336 96 0 0 chr9 115656938 115657250 -26614194 + AluSx SINE Alu 1 312 0 2108 117 3 7 chr9 115657302 115657610 -26613834 + AluSx SINE Alu 6 312 0 517 240 15 105 chr9 115657686 115657886 -26613558 + MER5A DNA MER1_type 1 182 -7 2221 83 0 0 chr9 115658788 115659077 -26612367 + AluSx SINE Alu 21 309 -3 198 0 0 0 chr9 115659456 115659478 -26611966 + (CA)n Simple_repeat Simple_repeat 2 23 0 261 253 0 11 chr9 115659478 115659531 -26611913 - L1MC4 LINE L1 -1347 6695 6642 1857 159 0 3 chr9 115659531 115659826 -26611618 - AluJb SINE Alu -16 296 3 261 253 0 11 chr9 115659826 115659859 -26611585 - L1MC4 LINE L1 -1400 6642 6610 494 246 54 44 chr9 115659962 115660165 -26611279 - MIR SINE MIR -5 257 53 24 0 0 0 chr9 115661588 115661612 -26609832 + GC_rich Low_complexity Low_complexity 1 24 0 195 100 0 0 chr9 115661613 115661643 -26609801 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 34 55 0 0 chr9 115661655 115661710 -26609734 + GC_rich Low_complexity Low_complexity 1 55 0 28 48 0 0 chr9 115661766 115661808 -26609636 + GC_rich Low_complexity Low_complexity 1 42 0 1592 158 43 4 chr9 115663320 115663598 -26607846 + AluJo SINE Alu 1 289 -23 1605 160 248 27 chr9 115663707 115664151 -26607293 - MLT1F LTR MaLR 0 542 1 1752 153 7 0 chr9 115664383 115664670 -26606774 - AluSx SINE Alu -23 289 1 1918 119 18 0 chr9 115665394 115665680 -26605764 - AluSx SINE Alu -8 304 14 723 268 202 23 chr9 115666020 115666583 -26604861 - L2 LINE L2 -1 3312 2669 816 241 28 14 chr9 115666598 115666810 -26604634 - MLT1K LTR MaLR 0 588 374 510 293 150 6 chr9 115666836 115667003 -26604441 - MLT1K LTR MaLR -273 315 125 227 255 20 0 chr9 115667106 115667157 -26604287 - L1ME3A LINE L1 -106 6064 6013 260 330 60 32 chr9 115667254 115667423 -26604021 + L2 LINE L2 582 760 -2554 2236 80 0 49 chr9 115667423 115667748 -26603696 - AluSx SINE Alu -3 309 1 260 330 60 32 chr9 115667748 115667796 -26603648 + L2 LINE L2 760 805 -2509 3541 198 9 23 chr9 115667858 115668636 -26602808 - L1MA9 LINE L1 -38 6274 5508 279 350 129 16 chr9 115668991 115669308 -26602136 + L2 LINE L2 1327 1679 -1635 1495 126 0 0 chr9 115669324 115669539 -26601905 - AluSg/x SINE Alu -19 293 79 951 146 0 0 chr9 115669539 115669683 -26601761 - AluSq/x SINE Alu -169 144 1 789 147 0 0 chr9 115669717 115669833 -26601611 + FLAM_C SINE Alu 2 117 -26 258 32 0 0 chr9 115669838 115669869 -26601575 + (CA)n Simple_repeat Simple_repeat 2 32 0 447 171 0 0 chr9 115669869 115669939 -26601505 + FLAM SINE Alu 60 129 -14 409 329 73 58 chr9 115669968 115670020 -26601424 + L2 LINE L2 1698 1748 -1566 737 173 0 38 chr9 115670020 115670153 -26601291 - FLAM_C SINE Alu -5 128 1 409 329 73 58 chr9 115670153 115670413 -26601031 + L2 LINE L2 1748 2015 -1299 2326 78 0 3 chr9 115670435 115670731 -26600713 + AluSc SINE Alu 1 295 -14 628 289 99 15 chr9 115670741 115670942 -26600502 + MIR SINE MIR 33 250 -12 889 276 134 47 chr9 115671023 115671410 -26600034 - LTR33A LTR ERVL 0 523 103 358 265 138 51 chr9 115671535 115671731 -26599713 + MLT1K LTR MaLR 359 571 -17 2124 99 0 0 chr9 115672143 115672450 -26598994 - AluSx SINE Alu 0 307 1 183 286 71 0 chr9 115672783 115672839 -26598605 + L2 LINE L2 2996 3055 -217 363 333 51 0 chr9 115673354 115673471 -26597973 - L2 LINE L2 -25 3247 3125 377 218 127 18 chr9 115673504 115673614 -26597830 + MIR SINE MIR 72 193 -69 1543 245 31 37 chr9 115673663 115674144 -26597300 - LTR16C LTR ERVL -13 478 1 724 164 8 25 chr9 115674165 115674287 -26597157 - FRAM SINE Alu -23 153 34 784 128 0 101 chr9 115674361 115674509 -26596935 - FLAM_C SINE Alu 0 133 1 2290 81 0 0 chr9 115674556 115674853 -26596591 + AluSc SINE Alu 1 297 -12 875 186 62 16 chr9 115674853 115675047 -26596397 - L1PB4 LINE L1 -5 6151 5949 206 343 126 23 chr9 115675099 115675274 -26596170 - L2 LINE L2 -252 3061 2869 664 185 119 20 chr9 115675377 115675528 -26595916 - FAM SINE Alu -9 166 1 1913 158 17 9 chr9 115676277 115676624 -26594820 - L1MB7 LINE L1 -19 6165 5816 1589 116 87 39 chr9 115676627 115676793 -26594651 - L1MA9 LINE L1 -2 6310 6153 2201 98 3 0 chr9 115676793 115677090 -26594354 - AluSg SINE Alu -12 298 1 1589 116 87 39 chr9 115677090 115677233 -26594211 - L1MA9 LINE L1 -159 6153 5986 642 75 43 0 chr9 115677236 115677330 -26594114 - L1MB7 LINE L1 -345 5829 5732 4241 187 57 11 chr9 115677474 115678570 -26592874 - L1MB2 LINE L1 -36 6135 4987 1816 155 0 31 chr9 115678572 115678889 -26592555 - AluJb SINE Alu -5 307 1 306 293 57 75 chr9 115678954 115679166 -26592278 + L2 LINE L2 2628 2835 -479 473 291 152 6 chr9 115679314 115679472 -26591972 + MER5A DNA MER1_type 9 189 0 412 246 43 150 chr9 115679483 115679637 -26591807 - MER5B DNA MER1_type -4 174 42 2039 94 14 10 chr9 115679637 115679934 -26591510 - AluSg SINE Alu -2 308 11 412 246 43 150 chr9 115679934 115679966 -26591478 - MER5B DNA MER1_type -136 42 8 310 258 11 34 chr9 115680081 115680170 -26591274 + L1MC4a LINE L1 5550 5636 -2172 1524 250 210 20 chr9 115680537 115681142 -26590302 + L2 LINE L2 2007 2726 -588 198 0 0 0 chr9 115681154 115681176 -26590268 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2013 110 0 3 chr9 115681176 115681458 -26589986 - AluSg SINE Alu -27 283 3 317 307 123 37 chr9 115681565 115681801 -26589643 + L2 LINE L2 2727 2941 -372 2318 53 0 0 chr9 115681801 115682117 -26589327 + AluSc SINE Alu 1 316 0 317 307 123 37 chr9 115682117 115682342 -26589102 + L2 LINE L2 2941 3313 0 337 290 126 13 chr9 115682348 115682586 -26588858 + L1MC4a LINE L1 5669 5933 -1875 451 229 136 22 chr9 115684218 115684394 -26587050 + MIR SINE MIR 9 200 -62 719 159 103 16 chr9 115684475 115684601 -26586843 - FRAM SINE Alu -14 162 26 281 151 208 0 chr9 115685170 115685223 -26586221 - L2 LINE L2 0 3313 3250 474 253 43 62 chr9 115685316 115685573 -26585871 + L1M4 LINE L1 3169 3420 -2726 * 761 194 331 5 chr9 115685571 115685837 -26585607 - L1ME LINE L1 -450 5714 5362 1216 215 24 24 chr9 115685937 115686230 -26585214 - AluSx SINE Alu -9 293 1 2220 92 26 0 chr9 115686234 115686538 -26584906 - AluSp SINE Alu -1 312 1 337 155 83 48 chr9 115686544 115686628 -26584816 - L1ME LINE L1 -869 5277 5191 405 0 0 0 chr9 115686633 115686678 -26584766 + (TG)n Simple_repeat Simple_repeat 2 46 0 363 260 68 20 chr9 115686841 115686987 -26584457 - L1MC4a LINE L1 -1834 5974 5822 395 293 191 73 chr9 115687007 115687457 -26583987 - HAL1 LINE L1 -938 1569 1067 330 303 83 53 chr9 115688179 115688407 -26583037 - HAL1 LINE L1 -2261 246 12 1584 152 3 73 chr9 115688509 115688838 -26582606 - AluJo SINE Alu 0 308 1 189 120 0 140 chr9 115688858 115688908 -26582536 - L2 LINE L2 -10 3262 3220 756 225 149 94 chr9 115688965 115689361 -26582083 - MLT1G1 LTR MaLR 0 595 157 2218 86 3 0 chr9 115689361 115689662 -26581782 - AluSx SINE Alu -10 302 1 756 225 149 94 chr9 115689662 115689829 -26581615 - MLT1G1 LTR MaLR -438 157 1 266 322 111 0 chr9 115690045 115690135 -26581309 - L2 LINE L2 -221 3051 2952 2030 121 7 0 chr9 115690505 115690802 -26580642 + AluSx SINE Alu 1 299 -13 221 304 130 17 chr9 115690866 115690981 -26580463 - MIR SINE MIR -27 235 108 647 143 0 16 chr9 115691374 115691500 -26579944 + L1MB2 LINE L1 6047 6170 -1 403 260 101 52 chr9 115692250 115692567 -26578877 - L1MC4a LINE L1 -678 5484 5117 307 325 0 0 chr9 115692619 115692702 -26578742 + MER58B DNA MER1_type 1 83 -258 1905 125 0 33 chr9 115692729 115693032 -26578412 - AluSx SINE Alu -19 293 1 987 190 107 32 chr9 115693044 115693150 -26578294 + MER58B DNA MER1_type 70 167 -2253 2043 128 3 0 chr9 115693150 115693456 -26577988 - AluSq SINE Alu -6 307 1 987 190 107 32 chr9 115693456 115693602 -26577842 + MER58B DNA MER1_type 167 341 0 455 224 105 86 chr9 115694328 115694538 -26576906 + MIR SINE MIR 31 244 -18 191 355 65 0 chr9 115695800 115695862 -26575582 - MIR SINE MIR -102 106 41 1558 146 0 63 chr9 115696312 115696473 -26574971 - AluJb SINE Alu -19 293 156 2080 124 0 0 chr9 115696473 115696772 -26574672 - AluSx SINE Alu -13 299 1 1558 146 0 63 chr9 115696772 115696897 -26574547 - AluJb SINE Alu -156 156 25 1783 159 0 10 chr9 115697206 115697507 -26573937 - AluJb SINE Alu -14 298 1 804 142 8 30 chr9 115697755 115697889 -26573555 - FLAM_C SINE Alu -2 131 1 1786 117 0 16 chr9 115698887 115699134 -26572310 - AluSx SINE Alu -16 296 54 2107 137 0 0 chr9 115699883 115700182 -26571262 - AluJb SINE Alu -13 299 1 201 198 429 11 chr9 115701770 115701861 -26569583 - MIR SINE MIR -113 149 21 21 0 0 0 chr9 115701949 115701970 -26569474 + AT_rich Low_complexity Low_complexity 1 21 0 217 167 14 56 chr9 115702712 115702784 -26568660 + (CGGGG)n Simple_repeat Simple_repeat 1 69 0 306 0 0 0 chr9 115702947 115702981 -26568463 + (CA)n Simple_repeat Simple_repeat 1 34 0 847 119 8 0 chr9 115703235 115703361 -26568083 - FLAM_C SINE Alu -16 127 1 595 246 251 0 chr9 115704305 115704508 -26566936 + MIR SINE MIR 7 260 -2 1908 127 50 17 chr9 115704574 115704874 -26566570 + AluJo SINE Alu 3 312 0 387 140 0 0 chr9 115705171 115705228 -26566216 - MLT1F1 LTR MaLR 0 567 511 457 246 75 8 chr9 115705229 115705363 -26566081 + MIR SINE MIR 49 191 -71 1848 197 62 31 chr9 115705489 115705910 -26565534 + MLT1F LTR MaLR 56 489 -53 1188 144 0 0 chr9 115705917 115706091 -26565353 - AluSg/x SINE Alu -15 297 124 2228 101 7 3 chr9 115706216 115706512 -26564932 + AluSp SINE Alu 1 297 -16 359 308 127 49 chr9 115706644 115706991 -26564453 - L2 LINE L2 -2599 715 342 1686 145 0 0 chr9 115707077 115707370 -26564074 + AluSx SINE Alu 43 335 0 192 40 0 0 chr9 115707369 115707394 -26564050 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 638 208 64 0 chr9 115707407 115707532 -26563912 + AluJo SINE Alu 2 134 -178 1474 199 4 11 chr9 115707609 115707886 -26563558 + AluJo SINE Alu 1 275 -37 211 70 23 47 chr9 115707893 115707936 -26563508 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 2226 106 3 0 chr9 115708320 115708612 -26562832 + AluSx SINE Alu 1 293 -19 893 160 33 75 chr9 115708658 115708871 -26562573 - MSTD LTR MaLR 0 396 193 323 467 20 4 chr9 115708895 115709071 -26562373 - AluSc SINE Alu 0 299 246 314 107 0 54 chr9 115709073 115709129 -26562315 - MSTC LTR MaLR -375 53 1 7673 198 53 33 chr9 115709129 115709251 -26562193 - MSTD-int LTR MaLR 0 1735 1617 2098 110 4 0 chr9 115709251 115709558 -26561886 + AluSp SINE Alu 1 308 0 7673 198 53 33 chr9 115709558 115710747 -26560697 - MSTD-int LTR MaLR -118 1617 377 2315 102 0 0 chr9 115710747 115711042 -26560402 - AluSq SINE Alu -18 295 1 7673 198 53 33 chr9 115711042 115711427 -26560017 - MSTD-int LTR MaLR -1358 377 1 1318 143 167 100 chr9 115711427 115711487 -26559957 - MSTD LTR MaLR 0 396 341 1999 137 0 7 chr9 115711487 115711779 -26559665 - AluSx SINE Alu -22 290 1 1318 143 167 100 chr9 115711779 115712089 -26559355 - MSTD LTR MaLR -55 341 1 2318 102 3 9 chr9 115712184 115712499 -26558945 + AluSp SINE Alu 1 313 0 1688 213 75 50 chr9 115712743 115712894 -26558550 + MLT1D LTR MaLR 32 178 -327 2084 127 0 23 chr9 115712894 115713201 -26558243 - AluSx SINE Alu -12 300 1 1688 213 75 50 chr9 115713201 115713491 -26557953 + MLT1D LTR MaLR 178 484 -21 2053 149 3 0 chr9 115713515 115713816 -26557628 - AluJb SINE Alu -9 303 2 2082 127 3 29 chr9 115714100 115714408 -26557036 + AluSx SINE Alu 1 300 -12 262 94 0 38 chr9 115714480 115714533 -26556911 + (TA)n Simple_repeat Simple_repeat 2 52 0 1169 221 12 21 chr9 115714574 115714814 -26556630 + MER8 DNA MER2_type 2 239 0 182 292 0 0 chr9 115714838 115714886 -26556558 - L2 LINE L2 -21 3251 3204 24 0 0 0 chr9 115714978 115715002 -26556442 + AT_rich Low_complexity Low_complexity 1 24 0 265 159 23 0 chr9 115715011 115715055 -26556389 - MER57A LTR ERV1 -64 339 295 2090 139 0 10 chr9 115715230 115715540 -26555904 - AluSx SINE Alu -5 307 1 2455 237 53 20 chr9 115715991 115716629 -26554815 + Zaphod DNA AcHobo 1 659 -3372 1867 118 50 27 chr9 115716745 115717042 -26554402 - MER52C LTR ERV1 -3 1275 972 2304 98 0 0 chr9 115717043 115717340 -26554104 + AluSx SINE Alu 16 312 0 862 213 25 113 chr9 115717341 115717580 -26553864 + MLT1B LTR MaLR 157 390 0 1644 201 184 32 chr9 115717584 115717656 -26553788 + Zaphod DNA AcHobo 3419 3479 -552 2038 149 0 7 chr9 115717656 115717964 -26553480 + AluJb SINE Alu 1 306 -6 1644 201 184 32 chr9 115717964 115718423 -26553021 + Zaphod DNA AcHobo 3479 4031 0 2144 135 0 0 chr9 115718665 115718962 -26552482 + AluSx SINE Alu 1 297 -15 2085 97 4 0 chr9 115719353 115719621 -26551823 - AluSx SINE Alu -18 294 26 2396 89 0 3 chr9 115719850 115720152 -26551292 - AluY SINE Alu -10 301 1 239 145 0 65 chr9 115720368 115720430 -26551014 - LTR66 LTR ERVL -173 437 380 405 209 64 85 chr9 115720433 115720573 -26550871 - L1MC4a LINE L1 -302 5819 5788 2384 95 0 0 chr9 115720573 115720877 -26550567 - AluSg SINE Alu -6 304 1 405 209 64 85 chr9 115720877 115720989 -26550455 - L1MC4a LINE L1 -333 5788 5675 2188 128 0 7 chr9 115721001 115721307 -26550137 - AluSc SINE Alu -5 304 1 1297 178 87 4 chr9 115721343 115721573 -26549871 - AluJb SINE Alu -28 284 36 3381 195 123 85 chr9 115721663 115722264 -26549180 + MER69B DNA AcHobo 3 580 -1946 2418 82 0 0 chr9 115722264 115722558 -26548886 - AluY SINE Alu -15 296 3 3381 195 123 85 chr9 115722558 115723034 -26548410 + MER69B DNA AcHobo 580 1129 -1397 1957 164 3 3 chr9 115723034 115723345 -26548099 - AluJo SINE Alu -1 311 1 3381 195 123 85 chr9 115723345 115723418 -26548026 + MER69B DNA AcHobo 1129 1198 -28 2663 30 0 13 chr9 115723558 115723859 -26547585 + AluY SINE Alu 1 297 -14 730 142 0 0 chr9 115723973 115724079 -26547365 + L1MC3 LINE L1 7204 7309 -476 1270 104 6 0 chr9 115724079 115724261 -26547183 + MSTB LTR MaLR 1 183 -243 2108 121 4 0 chr9 115724268 115724548 -26546896 - AluSx SINE Alu -25 287 7 2342 92 3 3 chr9 115724671 115724974 -26546470 - AluSx SINE Alu -9 303 1 2426 67 0 13 chr9 115725411 115725710 -26545734 - AluY SINE Alu -16 295 1 2117 134 0 0 chr9 115726118 115726416 -26545028 + AluSq SINE Alu 1 298 -15 1386 262 65 0 chr9 115726429 115726796 -26544648 + L1ME3A LINE L1 5600 5990 -180 257 0 30 0 chr9 115726820 115726853 -26544591 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1931 160 27 0 chr9 115726877 115727171 -26544273 + AluJb SINE Alu 1 302 -10 26789 46 39 4 chr9 115727380 115730736 -26540708 - L1P LINE L1 -2668 3478 4 2386 94 0 0 chr9 115730743 115731041 -26540403 - AluSq SINE Alu -15 298 1 2350 106 0 0 chr9 115732052 115732345 -26539099 - AluSx SINE Alu -19 293 1 264 289 123 0 chr9 115732349 115732463 -26538981 - MIR SINE MIR -82 180 53 21 57 0 0 chr9 115732571 115732606 -26538838 + AT_rich Low_complexity Low_complexity 1 35 0 1116 186 35 10 chr9 115732621 115732820 -26538624 - MER20 DNA MER1_type 0 219 16 21 36 0 0 chr9 115733223 115733251 -26538193 + AT_rich Low_complexity Low_complexity 1 28 0 209 184 0 0 chr9 115733609 115733647 -26537797 + T-rich Low_complexity Low_complexity 4 41 0 2310 109 0 3 chr9 115733795 115734108 -26537336 - AluSx SINE Alu 0 312 1 309 275 78 7 chr9 115735319 115735461 -26535983 - L1ME4a LINE L1 0 6121 5970 273 244 37 82 chr9 115735474 115735609 -26535835 - L1ME4a LINE L1 -224 5897 5769 624 278 50 6 chr9 115735609 115735789 -26535655 - MIR SINE MIR -44 218 31 2139 108 34 3 chr9 115735825 115736122 -26535322 - AluSx SINE Alu -6 306 1 2152 98 7 0 chr9 115738993 115739287 -26532157 - AluSx SINE Alu 0 305 10 2276 106 0 7 chr9 115739607 115739899 -26531545 + AluSx SINE Alu 1 290 -22 1549 148 7 61 chr9 115739926 115740203 -26531241 + AluJo SINE Alu 3 264 -48 2267 99 7 16 chr9 115740213 115740517 -26530927 - AluSx SINE Alu -11 301 1 22 0 0 0 chr9 115740523 115740545 -26530899 + AT_rich Low_complexity Low_complexity 1 22 0 489 275 18 12 chr9 115740570 115740737 -26530707 - L1ME4a LINE L1 -324 5797 5630 1945 171 0 0 chr9 115740974 115741284 -26530160 - AluJb SINE Alu -2 310 1 261 259 24 0 chr9 115741348 115741433 -26530011 + L1MC4a LINE L1 5373 5459 -2349 511 223 222 8 chr9 115741465 115741743 -26529701 + L1MC4a LINE L1 5536 5818 -303 232 196 62 54 chr9 115741767 115741879 -26529565 + L1ME4a LINE L1 5943 6055 -66 1120 106 0 0 chr9 115742183 115742324 -26529120 - AluSq/x SINE Alu -171 141 1 1804 138 20 30 chr9 115742512 115742809 -26528635 - AluJo SINE Alu -18 294 1 645 36 0 0 chr9 115744065 115744148 -26527296 - AluY SINE Alu 0 312 230 1947 121 0 85 chr9 115744863 115745193 -26526251 - AluSx SINE Alu -10 302 1 2658 187 61 26 chr9 115745722 115745918 -26525526 - L1MC3 LINE L1 0 7785 7597 2260 122 3 0 chr9 115745918 115746229 -26525215 - AluSx SINE Alu 0 312 1 2658 187 61 26 chr9 115746229 115746652 -26524792 - L1MC3 LINE L1 -188 7597 7144 4101 183 57 12 chr9 115747182 115748105 -26523339 - L1MB7 LINE L1 0 6184 5224 225 196 0 0 chr9 115748105 115748151 -26523293 + (TG)n Simple_repeat Simple_repeat 2 47 0 2366 79 0 0 chr9 115748157 115748448 -26522996 - AluY SINE Alu -20 291 1 693 150 0 26 chr9 115748465 115748578 -26522866 - AluJb SINE Alu -26 286 177 1566 133 126 19 chr9 115748606 115748876 -26522568 - AluJo SINE Alu -13 299 1 844 137 47 85 chr9 115749031 115749242 -26522202 - L1MA10 LINE L1 0 6334 6132 1600 201 118 48 chr9 115749312 115749754 -26521690 + MER44D DNA MER2_type 1 528 -77 471 169 0 0 chr9 115749765 115749836 -26521608 + FLAM SINE Alu 50 120 -23 774 149 16 0 chr9 115749837 115749958 -26521486 + MER44D DNA MER2_type 487 609 0 752 161 37 24 chr9 115749958 115750125 -26521319 - L1MB1 LINE L1 -69 6099 5941 23 33 0 0 chr9 115750382 115750412 -26521032 + AT_rich Low_complexity Low_complexity 1 30 0 336 120 0 0 chr9 115751111 115751161 -26520283 - L1MC5 LINE L1 -103 7858 7809 1289 183 36 16 chr9 115751207 115751458 -26519986 - MLT1D LTR MaLR -44 461 206 731 184 0 146 chr9 115751466 115751678 -26519766 - L1MB5 LINE L1 -11 6163 5983 1237 193 47 18 chr9 115751678 115751952 -26519492 - L1MB5 LINE L1 -450 5724 5443 1852 149 3 0 chr9 115751965 115752253 -26519191 - AluJo SINE Alu -20 292 4 198 349 0 0 chr9 115752362 115752428 -26519016 - MIR SINE MIR 0 262 197 2282 24 3 0 chr9 115753456 115753745 -26517699 - L1P LINE L1 -2914 3232 2943 * 15352 18 0 0 chr9 115753742 115756136 -26515308 + L1HS LINE L1 3623 6016 -139 950 113 0 0 chr9 115756279 115756420 -26515024 + L1HS LINE L1 6015 6155 0 1861 92 45 57 chr9 115756534 115756848 -26514596 + AluSx SINE Alu 1 310 -2 816 209 234 6 chr9 115756850 115757205 -26514239 + L1MC5 LINE L1 7476 7911 -50 377 79 0 16 chr9 115758744 115758807 -26512637 + (TG)n Simple_repeat Simple_repeat 1 62 0 229 163 93 0 chr9 115759036 115759079 -26512365 + L2 LINE L2 3226 3272 0 204 283 0 0 chr9 115759097 115759143 -26512301 + L2 LINE L2 3221 3266 -6 493 281 205 0 chr9 115759163 115759334 -26512110 + MIR SINE MIR 36 241 -21 207 69 0 0 chr9 115759356 115759385 -26512059 + (CA)n Simple_repeat Simple_repeat 1 29 0 399 313 179 12 chr9 115759773 115760013 -26511431 + L3 LINE CR1 220 499 -1078 198 255 0 0 chr9 115760062 115760098 -26511346 + L2 LINE L2 3223 3261 -11 2088 114 0 3 chr9 115760098 115760397 -26511047 + AluSg SINE Alu 1 298 -12 206 255 0 0 chr9 115760727 115760778 -26510666 + A-rich Low_complexity Low_complexity 1 51 0 1005 327 108 26 chr9 115761642 115761824 -26509620 + L1M4 LINE L1 3078 3244 -2902 1754 163 0 7 chr9 115761824 115762131 -26509313 + AluSx SINE Alu 3 307 -5 1005 327 108 26 chr9 115762131 115762685 -26508759 + L1M4 LINE L1 3244 3875 -2271 2270 94 3 7 chr9 115762838 115763147 -26508297 + AluSc SINE Alu 1 308 -1 1509 178 46 3 chr9 115763190 115763494 -26507950 + L1MB7 LINE L1 5851 6167 -17 3566 176 36 64 chr9 115763894 115764372 -26507072 - L1MB5 LINE L1 -54 6120 5673 1660 161 0 39 chr9 115764372 115764677 -26506767 - AluSx SINE Alu -19 293 1 3566 176 36 64 chr9 115764677 115765030 -26506414 - L1MB5 LINE L1 -501 5673 5312 25 0 0 0 chr9 115765410 115765435 -26506009 + AT_rich Low_complexity Low_complexity 1 25 0 240 111 0 0 chr9 115765466 115765502 -26505942 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 1234 108 20 34 chr9 115766050 115766254 -26505190 + AluJo SINE Alu 101 301 -11 646 270 115 5 chr9 115767629 115767829 -26503615 + MIR SINE MIR 41 262 0 1961 152 7 0 chr9 115771614 115771924 -26499520 + AluSx SINE Alu 1 312 0 942 197 33 0 chr9 115772139 115772322 -26499122 + MER3 DNA MER1_type 9 197 -12 2067 109 3 0 chr9 115772499 115772807 -26498637 - AluSq SINE Alu 0 309 1 180 0 0 0 chr9 115772836 115772856 -26498588 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 315 0 0 0 chr9 115772855 115772890 -26498554 + (CA)n Simple_repeat Simple_repeat 1 35 0 1812 133 0 17 chr9 115773775 115774068 -26497376 + AluJo SINE Alu 3 290 -22 230 276 35 0 chr9 115774812 115774870 -26496574 + MIR SINE MIR 88 147 -61 1273 173 71 11 chr9 115774973 115775256 -26496188 - MER33 DNA MER1_type -22 302 3 255 61 0 0 chr9 115775345 115775378 -26496066 + (TA)n Simple_repeat Simple_repeat 1 33 0 744 169 0 23 chr9 115776172 115776302 -26495142 - MER5B DNA MER1_type -51 127 1 2161 120 3 0 chr9 115776808 115777117 -26494327 + AluSg SINE Alu 1 310 0 787 231 75 9 chr9 115777219 115777431 -26494013 - MIR SINE MIR 0 262 37 1012 297 203 42 chr9 115777559 115778396 -26493048 + L2 LINE L2 1752 2453 -860 1801 179 0 0 chr9 115778396 115778708 -26492736 + AluJo SINE Alu 1 312 0 1012 297 203 42 chr9 115778708 115779158 -26492286 + L2 LINE L2 2453 3313 0 1755 207 24 39 chr9 115780086 115780452 -26490992 - LTR26E LTR ERV1 -12 603 177 2195 113 0 0 chr9 115780452 115780754 -26490690 - AluSx SINE Alu -10 302 1 1755 207 24 39 chr9 115780754 115780929 -26490515 - LTR26E LTR ERV1 -438 177 1 253 363 30 7 chr9 115782032 115782167 -26489277 - L2 LINE L2 -12 3260 3123 536 339 59 53 chr9 115782301 115782785 -26488659 - L2 LINE L2 -191 3081 2595 1472 207 10 3 chr9 115782785 115783090 -26488354 + AluJo SINE Alu 1 307 -5 536 339 59 53 chr9 115783090 115783328 -26488116 - L2 LINE L2 -677 2595 2360 584 193 109 0 chr9 115783655 115783774 -26487670 + MER5A DNA MER1_type 19 150 -39 1847 147 17 0 chr9 115783856 115784148 -26487296 - AluSx SINE Alu -15 297 1 189 258 121 38 chr9 115784202 115784334 -26487110 + L2 LINE L2 2249 2391 -923 810 128 40 0 chr9 115784344 115784469 -26486975 - AluJb SINE Alu -181 131 2 1713 160 45 0 chr9 115784716 115785003 -26486441 + AluJb SINE Alu 1 300 -12 422 290 117 19 chr9 115785152 115785314 -26486130 - MIR SINE MIR -34 228 51 21 0 0 0 chr9 115786266 115786287 -26485157 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 115789223 115789245 -26482199 + AT_rich Low_complexity Low_complexity 1 22 0 450 270 74 53 chr9 115792555 115792744 -26478700 - MIR SINE MIR -6 256 64 311 57 0 227 chr9 115793289 115793518 -26477926 + (GGA)n Simple_repeat Simple_repeat 1 177 0 442 335 185 16 chr9 115794358 115794725 -26476719 + L2 LINE L2 2877 3305 -8 243 226 0 38 chr9 115794970 115795023 -26476421 + AluJ/monomer SINE Alu 234 284 -18 273 303 0 0 chr9 115795034 115795123 -26476321 - L1MC4 LINE L1 -1339 6703 6615 301 236 0 0 chr9 115795131 115795186 -26476258 - L1MC4 LINE L1 -1340 6702 6648 1489 156 27 8 chr9 115795210 115795473 -26475971 - AluJo SINE Alu -44 268 1 180 70 70 0 chr9 115795554 115795597 -26475847 + (TG)n Simple_repeat Simple_repeat 1 46 0 325 123 53 29 chr9 115795610 115795781 -26475663 + (TG)n Simple_repeat Simple_repeat 1 175 0 220 219 0 0 chr9 115795802 115795843 -26475601 + (TG)n Simple_repeat Simple_repeat 1 41 0 354 220 2 7 chr9 115795880 115796052 -26475392 + Charlie4 DNA MER1_type 1825 1961 0 710 163 133 7 chr9 115797959 115798094 -26473350 + AluJo SINE Alu 2 153 -159 658 160 0 0 chr9 115798095 115798195 -26473249 - AluJ/FLAM SINE Alu -202 100 1 238 254 45 91 chr9 115798754 115798864 -26472580 - L2 LINE L2 -49 3223 3119 336 281 181 44 chr9 115799283 115799443 -26472001 + MIR SINE MIR 31 212 -50 2968 139 2 11 chr9 115799449 115799895 -26471549 + MER83 LTR ERV1 7 448 0 288 105 0 0 chr9 115799900 115799938 -26471506 + L2 LINE L2 3264 3301 -12 886 162 58 11 chr9 115800499 115800569 -26470875 + L1MB2 LINE L1 5296 5361 -822 2310 101 0 7 chr9 115800569 115800876 -26470568 + AluSc SINE Alu 1 305 -4 886 162 58 11 chr9 115800876 115800996 -26470448 + L1MB2 LINE L1 5361 5495 -688 686 118 0 0 chr9 115801009 115801102 -26470342 + AluS SINE Alu 2 94 -218 567 93 0 0 chr9 115801108 115801183 -26470261 + AluSg/x SINE Alu 203 277 -32 3596 143 39 56 chr9 115801183 115801885 -26469559 + L1MB2 LINE L1 5474 6163 -8 1844 167 3 10 chr9 115802273 115802584 -26468860 - AluJo SINE Alu -2 310 2 365 83 0 0 chr9 115802940 115802988 -26468456 + AluSc SINE Alu 221 268 -31 393 95 0 0 chr9 115802995 115803058 -26468386 + (TGGA)n Simple_repeat Simple_repeat 4 66 0 229 193 53 35 chr9 115804208 115804322 -26467122 + (CACAC)n Simple_repeat Simple_repeat 5 120 0 187 257 133 38 chr9 115805870 115805975 -26465469 - MIR SINE MIR -132 130 16 845 193 50 13 chr9 115806820 115807119 -26464325 - L1MA9 LINE L1 -22 6290 5883 228 292 28 0 chr9 115807633 115807705 -26463739 + MIR SINE MIR 92 165 -97 445 223 152 43 chr9 115808004 115808188 -26463256 + MIR SINE MIR 1 204 -58 1062 172 10 53 chr9 115808202 115808410 -26463034 + MER2 DNA MER2_type 1 199 -146 243 176 137 0 chr9 115808410 115808461 -26462983 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 886 114 23 0 chr9 115808462 115808594 -26462850 - FAM SINE Alu -16 169 35 1459 203 22 32 chr9 115808836 115809151 -26462293 + LTR8 LTR ERV1 380 691 0 310 181 298 0 chr9 115809376 115809470 -26461974 - MER5C DNA MER1_type -202 122 1 506 250 132 0 chr9 115810557 115810709 -26460735 + MER96 DNA MER1_type? 4 175 0 972 192 20 30 chr9 115811229 115811432 -26460012 + MER3 DNA MER1_type 1 201 -8 295 216 0 0 chr9 115811397 115811448 -26459996 - MER3 DNA MER1_type -119 90 40 * 213 298 83 40 chr9 115812103 115812253 -26459191 - MIR SINE MIR -56 152 27 345 257 111 35 chr9 115812723 115812949 -26458495 - L2 LINE L2 -63 3250 3008 593 246 132 40 chr9 115813068 115813446 -26457998 + L1MC5 LINE L1 7453 7865 -96 1476 254 205 30 chr9 115814466 115815265 -26456179 - HAL1 LINE L1 -1187 1320 382 965 275 121 19 chr9 115815395 115815810 -26455634 - HAL1 LINE L1 -1994 513 57 21 36 0 0 chr9 115815854 115815882 -26455562 + AT_rich Low_complexity Low_complexity 1 28 0 1375 300 89 42 chr9 115816321 115817094 -26454350 + L2 LINE L2 1988 2822 -450 1910 84 48 0 chr9 115817094 115817343 -26454101 + AluSg SINE Alu 38 298 -12 1375 300 89 42 chr9 115817343 115817588 -26453856 + L2 LINE L2 2822 3054 -218 2158 119 3 0 chr9 115818726 115819021 -26452423 + AluSx SINE Alu 1 296 -16 2131 79 61 0 chr9 115819907 115820186 -26451258 + AluY SINE Alu 1 296 -15 2169 104 17 7 chr9 115820190 115820489 -26450955 + AluSg SINE Alu 1 302 -8 229 186 34 34 chr9 115820957 115821016 -26450428 + L1MC5 LINE L1 7855 7913 -48 1158 261 61 59 chr9 115821522 115822082 -26449362 - HAL1 LINE L1 -1002 1505 945 2276 94 10 3 chr9 115822787 115823086 -26448358 + AluY SINE Alu 9 309 -2 2509 73 0 6 chr9 115823194 115823507 -26447937 + AluY SINE Alu 1 311 0 1885 128 0 40 chr9 115825352 115825626 -26445818 + AluSq SINE Alu 1 263 -50 471 18 0 0 chr9 115826085 115826141 -26445303 + (TG)n Simple_repeat Simple_repeat 2 57 0 1046 109 193 15 chr9 115826141 115826343 -26445101 + MER21A LTR ERV1 28 265 -666 2844 176 43 43 chr9 115826347 115826903 -26444541 + MER21A LTR ERV1 376 931 0 664 165 0 9 chr9 115827472 115827581 -26443863 - AluJb SINE Alu -192 120 13 945 152 34 17 chr9 115827757 115827935 -26443509 + L1MB2 LINE L1 5989 6169 -2 261 94 71 0 chr9 115828078 115828163 -26443281 + (TA)n Simple_repeat Simple_repeat 1 91 0 21 0 0 0 chr9 115828170 115828191 -26443253 + AT_rich Low_complexity Low_complexity 1 21 0 198 150 0 0 chr9 115828323 115828363 -26443081 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 1078 203 30 13 chr9 115828621 115828858 -26442586 - Charlie6 DNA MER1_type -205 3295 3055 2248 181 169 7 chr9 115828873 115828980 -26442464 - Charlie6 DNA MER1_type -1775 1725 1637 1694 155 7 51 chr9 115828980 115829276 -26442168 - AluJb SINE Alu -29 283 1 2248 181 169 7 chr9 115829276 115829720 -26441724 - Charlie6 DNA MER1_type -1863 1637 1085 1680 169 10 17 chr9 115829826 115830116 -26441328 + AluJo SINE Alu 1 288 -24 1745 169 41 12 chr9 115830494 115830814 -26440630 + L1MC1 LINE L1 6005 6333 0 284 208 0 0 chr9 115831128 115831181 -26440263 + FLAM SINE Alu 67 119 -14 855 217 36 0 chr9 115831212 115831378 -26440066 + AluJb SINE Alu 137 308 -4 966 156 29 6 chr9 115832214 115832387 -26439057 - FRAM SINE Alu 0 176 1 243 122 61 20 chr9 115832537 115832586 -26438858 - L1ME LINE L1 -245 5876 5826 997 236 37 50 chr9 115832731 115833028 -26438416 - MLT1I LTR MaLR -2 407 115 3350 178 56 25 chr9 115833029 115833855 -26437589 + L1MB7 LINE L1 5141 5994 -190 638 259 125 22 chr9 115834051 115834283 -26437161 + MIR SINE MIR 1 256 -6 344 329 110 0 chr9 115834613 115834768 -26436676 + L3 LINE CR1 1233 1404 -173 717 300 85 41 chr9 115834769 115835450 -26435994 + L2 LINE L2 2575 3272 0 2065 118 33 10 chr9 115835995 115836300 -26435144 + AluSx SINE Alu 1 312 0 990 116 0 27 chr9 115837050 115837197 -26434247 + FLAM_C SINE Alu 1 143 0 222 37 0 0 chr9 115837335 115837362 -26434082 + (TG)n Simple_repeat Simple_repeat 2 28 0 2129 124 3 14 chr9 115838048 115838367 -26433077 + AluSx SINE Alu 1 312 0 306 256 70 0 chr9 115838414 115838482 -26432962 - LTR16A LTR ERVL -6 444 371 3324 171 14 78 chr9 115838482 115839212 -26432232 + LTR8 LTR ERV1 1 683 -8 893 259 84 46 chr9 115839221 115839568 -26431876 - LTR16A LTR ERVL -72 378 19 985 291 114 48 chr9 115840310 115840348 -26431096 + HERVL LTR ERVL 3248 3282 -1714 1202 179 143 29 chr9 115840348 115840656 -26430788 - MER2 DNA MER2_type -1 343 1 985 291 114 48 chr9 115840656 115841072 -26430372 + HERVL LTR ERVL 3282 3480 -1516 2473 153 46 10 chr9 115841072 115841483 -26429961 + MSTB LTR MaLR 1 426 0 985 291 114 48 chr9 115841483 115841712 -26429732 + HERVL LTR ERVL 3480 3693 -1303 630 313 94 33 chr9 115842181 115842954 -26428490 + HERVL LTR ERVL 4534 5344 -310 2481 193 44 48 chr9 115844451 115844762 -26426682 - MER77 LTR ERV1 -6 599 312 1986 159 0 3 chr9 115844762 115845063 -26426381 - AluJo SINE Alu -12 300 1 2481 193 44 48 chr9 115845063 115845322 -26426122 - MER77 LTR ERV1 -293 312 54 271 277 0 15 chr9 115845352 115845417 -26426027 - L2 LINE L2 -52 3261 3198 2073 119 7 17 chr9 115846499 115846823 -26424621 + AluSg SINE Alu 11 310 0 354 200 38 0 chr9 115848295 115848375 -26423069 - L1MB1 LINE L1 -1 6167 6085 255 208 42 0 chr9 115848472 115848544 -26422900 - MER69 DNA AcHobo -908 318 244 286 228 99 105 chr9 115849234 115849396 -26422048 - MLT1H LTR MaLR 0 549 389 438 355 96 25 chr9 115849953 115850423 -26421021 - MERVL LTR ERVL -599 4886 4384 287 250 71 24 chr9 115850488 115850572 -26420872 - MERVL LTR ERVL -1517 4247 4160 428 201 82 15 chr9 115850905 115851039 -26420405 + L1MD1 LINE L1 5978 6120 -122 854 161 7 13 chr9 115851055 115851210 -26420234 + L1MD1 LINE L1 6088 6241 -1 311 357 8 0 chr9 115851599 115851725 -26419719 - MERVL LTR ERVL -2319 3335 3209 306 106 0 0 chr9 115852861 115852908 -26418536 + (TG)n Simple_repeat Simple_repeat 2 48 0 271 269 126 95 chr9 115854727 115855147 -26416297 + L1ME LINE L1 5388 5820 -301 1284 161 19 23 chr9 115855182 115855443 -26416001 - L1MB4 LINE L1 -1 6179 5920 2109 201 9 5 chr9 115856036 115856460 -26414984 - L1MB4 LINE L1 -278 5902 5477 501 280 76 15 chr9 115857379 115857653 -26413791 - L1MC5 LINE L1 -535 7492 7272 29 28 0 0 chr9 115858309 115858345 -26413099 + AT_rich Low_complexity Low_complexity 1 36 0 376 274 198 55 chr9 115858879 115858954 -26412490 - L1MC5 LINE L1 -64 7897 7834 2275 108 3 3 chr9 115858954 115859259 -26412185 - AluSx SINE Alu -7 305 1 376 274 198 55 chr9 115859259 115859709 -26411735 - L1MC5 LINE L1 -127 7834 7297 1194 221 97 82 chr9 115859853 115860375 -26411069 - L1MC4 LINE L1 -734 7227 6723 21 36 0 0 chr9 115862196 115862224 -26409220 + AT_rich Low_complexity Low_complexity 1 28 0 2117 138 0 16 chr9 115862260 115862564 -26408880 - AluSx SINE Alu -13 299 1 1784 176 53 11 chr9 115862757 115863114 -26408330 - MLT1F LTR MaLR -3 539 168 380 232 106 92 chr9 115863889 115864008 -26407436 - L1MC4 LINE L1 -974 7068 6952 2088 78 92 3 chr9 115864008 115864291 -26407153 - AluSq SINE Alu -5 308 1 380 232 106 92 chr9 115864291 115864464 -26406980 - L1MC4 LINE L1 -1090 6952 6772 304 291 24 80 chr9 115865028 115865195 -26406249 + L1MC/D LINE L1 5645 5799 -2009 694 255 120 0 chr9 115865195 115865395 -26406049 - MER58A DNA MER1_type 0 224 1 304 291 24 80 chr9 115865395 115865440 -26406004 + L1MC/D LINE L1 5799 5845 -1963 2199 86 0 45 chr9 115867343 115867656 -26403788 - AluY SINE Alu -12 299 1 912 183 15 50 chr9 115867810 115868012 -26403432 - MER20 DNA MER1_type -24 195 1 198 0 0 0 chr9 115868667 115868689 -26402755 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 673 237 65 6 chr9 115869447 115869616 -26401828 + LTR40a LTR ERVL 339 517 -2 274 228 175 76 chr9 115869617 115869788 -26401656 + HERVL40 LTR ERVL 1 188 -5342 1758 258 69 67 chr9 115870031 115870811 -26400633 + HERVL40 LTR ERVL 1234 1632 -1405 587 264 41 41 chr9 115870983 115871180 -26400264 + HERVL40 LTR ERVL 4448 4644 -886 274 266 138 0 chr9 115871983 115872077 -26399367 + MER66-int LTR ERV1 6151 6257 -419 * 567 223 108 0 chr9 115872040 115872179 -26399265 + HERVL68 LTR ERVL 2822 2975 -62 307 265 133 0 chr9 115872320 115872418 -26399026 + LTR40a LTR ERVL 31 141 -378 462 280 218 10 chr9 115872429 115872736 -26398708 + L2 LINE L2 2254 2624 -690 316 300 23 114 chr9 115872837 115873100 -26398344 - HAL1 LINE L1 -2262 245 7 727 177 0 15 chr9 115873567 115873697 -26397747 + AluJo/FLAM SINE Alu 6 133 -179 1411 206 14 32 chr9 115873700 115873982 -26397462 + AluJo SINE Alu 6 282 -30 536 261 167 0 chr9 115874981 115875203 -26396241 - MIR SINE MIR -1 261 3 694 238 98 114 chr9 115875472 115875858 -26395586 - MLT1I LTR MaLR 0 409 30 1233 133 0 0 chr9 115875895 115876068 -26395376 - AluSq SINE Alu -7 306 134 2406 84 3 7 chr9 115876068 115876377 -26395067 - AluY SINE Alu -3 308 1 578 181 0 0 chr9 115876785 115876879 -26394565 + FLAM_A SINE Alu 1 94 -48 1928 202 139 32 chr9 115876884 115877443 -26394001 + L1ME1 LINE L1 5483 6101 -65 183 241 103 0 chr9 115878532 115878590 -26392854 + MER5B DNA MER1_type 4 67 -111 2469 140 22 12 chr9 115878687 115879094 -26392350 - LTR57 LTR ERVL 0 411 1 442 169 137 24 chr9 115879398 115879522 -26391922 - MIR SINE MIR 0 262 125 2081 132 13 3 chr9 115880387 115880691 -26390753 - AluSx SINE Alu -5 307 1 186 353 109 8 chr9 115880710 115880829 -26390615 - L2 LINE L2 -11 3302 3172 296 345 58 0 chr9 115880896 115881035 -26390409 - L2 LINE L2 -269 3044 2898 2108 141 3 0 chr9 115881723 115882028 -26389416 + AluJb SINE Alu 1 306 -6 1550 177 116 3 chr9 115882058 115882403 -26389041 - MER58D DNA MER1_type -2 384 1 357 245 73 96 chr9 115882430 115882648 -26388796 + L1ME LINE L1 4120 4325 -1821 2381 92 7 0 chr9 115882648 115882952 -26388492 + AluSx SINE Alu 1 306 -6 357 245 73 96 chr9 115882952 115883169 -26388275 + L1ME LINE L1 4325 4545 -1601 270 259 197 50 chr9 115883226 115883546 -26387898 + L1ME LINE L1 4867 5233 -913 690 313 81 26 chr9 115883575 115883994 -26387450 + L1ME LINE L1 5273 5714 -448 2261 80 17 0 chr9 115884088 115884389 -26387055 - L1PA12 LINE L1 -284 5884 5579 1749 54 16 25 chr9 115884389 115884628 -26386816 + L1PA13 LINE L1 5923 6162 -1 1584 197 91 39 chr9 115884630 115884963 -26386481 - L1MEc LINE L1 -4164 2232 1863 1535 188 3 33 chr9 115884963 115885266 -26386178 + AluJo SINE Alu 2 295 -17 1584 197 91 39 chr9 115885266 115885440 -26386004 - L1MEc LINE L1 -4533 1863 1699 1334 219 65 14 chr9 115885441 115885857 -26385587 - L1MEc LINE L1 -5324 1072 556 1060 198 15 20 chr9 115886816 115887013 -26384431 - AluJo SINE Alu -32 280 85 702 183 0 0 chr9 115887013 115887128 -26384316 - AluJo SINE Alu -62 250 136 367 254 63 24 chr9 115887514 115887640 -26383804 + L2 LINE L2 2334 2464 -850 1394 243 213 2 chr9 115887761 115888267 -26383177 - MER90 LTR ERV1 0 575 1 1646 145 25 0 chr9 115888587 115888829 -26382615 + AluSx SINE Alu 52 299 -13 194 91 30 0 chr9 115890364 115890397 -26381047 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 734 151 0 43 chr9 115891333 115891472 -26379972 - AluJo SINE Alu -169 133 1 22 0 0 0 chr9 115892400 115892422 -26379022 + AT_rich Low_complexity Low_complexity 1 22 0 2244 121 0 0 chr9 115892881 115893178 -26378266 - AluSx SINE Alu -15 297 1 513 294 77 13 chr9 115893755 115893824 -26377620 - MIR SINE MIR -12 250 187 390 21 0 0 chr9 115893824 115893871 -26377573 + (CA)n Simple_repeat Simple_repeat 1 47 0 513 294 77 13 chr9 115893871 115894036 -26377408 - MIR SINE MIR -75 187 1 192 229 0 37 chr9 115895767 115895825 -26375619 + MIR SINE MIR 19 71 -137 2259 104 7 0 chr9 115895876 115896175 -26375269 - AluSc SINE Alu -8 301 1 26 0 0 0 chr9 115897867 115897893 -26373551 + AT_rich Low_complexity Low_complexity 1 26 0 295 281 58 25 chr9 115897901 115898022 -26373422 - L2 LINE L2 -5 3267 3143 1869 142 7 35 chr9 115898224 115898534 -26372910 - AluSx SINE Alu -11 301 1 428 139 0 13 chr9 115898866 115898945 -26372499 + L1MA8 LINE L1 6209 6286 -5 553 328 35 0 chr9 115899332 115899533 -26371911 - MIR SINE MIR -49 213 6 2090 108 7 0 chr9 115899680 115899966 -26371478 + AluSq SINE Alu 12 299 -14 1725 158 46 3 chr9 115900132 115900416 -26371028 - AluJb SINE Alu -16 296 1 1219 228 119 18 chr9 115900477 115900863 -26370581 + MER57B LTR ERV1 10 434 0 869 184 55 138 chr9 115900929 115901363 -26370081 - LTR37B LTR ERV1 0 468 71 1053 163 0 0 chr9 115901363 115901523 -26369921 + AluSg/x SINE Alu 137 296 -16 400 330 31 29 chr9 115901964 115902181 -26369263 + MER20B DNA MER1_type 1 219 0 918 143 128 20 chr9 115902642 115902838 -26368606 - MSTA LTR MaLR 0 428 212 243 146 0 0 chr9 115903130 115903171 -26368273 + (GA)n Simple_repeat Simple_repeat 1 41 0 435 67 0 0 chr9 115903342 115903402 -26368042 - MSTA LTR MaLR -368 60 1 431 316 45 6 chr9 115903847 115904024 -26367420 - L2 LINE L2 -1281 2033 1850 289 232 30 40 chr9 115904503 115904602 -26366842 + L2 LINE L2 2668 2765 -549 361 346 80 32 chr9 115905925 115906237 -26365207 - L1MC4a LINE L1 -1739 6069 5743 1294 225 39 49 chr9 115906245 115906631 -26364813 + L1P3 LINE L1 1102 1483 -4978 4644 77 25 2 chr9 115906654 115907566 -26363878 + L1PA10 LINE L1 4977 5912 -256 498 271 49 7 chr9 115907573 115907717 -26363727 - MLT2E LTR ERVL -468 160 11 463 305 129 41 chr9 115907729 115907976 -26363468 - L2 LINE L2 -255 3058 2768 2374 92 0 0 chr9 115907976 115908281 -26363163 + AluY SINE Alu 1 305 -6 463 305 129 41 chr9 115908281 115908419 -26363025 - L2 LINE L2 -545 2768 2644 1532 191 24 37 chr9 115908877 115909171 -26362273 + AluJo SINE Alu 1 290 -22 2345 156 25 37 chr9 115909193 115909624 -26361820 + MSTB LTR MaLR 1 426 0 23 33 0 0 chr9 115909737 115909767 -26361677 + AT_rich Low_complexity Low_complexity 1 30 0 444 232 35 14 chr9 115909767 115909909 -26361535 + L1ME LINE L1 5423 5567 -597 885 172 87 159 chr9 115909975 115909987 -26361457 + HAL1 LINE L1 1453 1464 -1043 1920 168 3 0 chr9 115909987 115910297 -26361147 + AluSx SINE Alu 1 311 -1 885 172 87 159 chr9 115910297 115910686 -26360758 + HAL1 LINE L1 1464 1825 -682 2163 109 13 13 chr9 115910689 115910993 -26360451 + AluSx SINE Alu 1 304 -8 372 268 124 0 chr9 115911139 115911292 -26360152 - L1M4 LINE L1 -2945 3201 3030 15582 87 14 2 chr9 115911614 115914606 -26356838 + L1PA7 LINE L1 3110 6150 -4 496 173 110 0 chr9 115914609 115914736 -26356708 + L1M4 LINE L1 3871 4011 -2135 1468 313 82 50 chr9 115914762 115915089 -26356355 - ERVL LTR ERVL -751 5013 4698 1771 163 7 0 chr9 115915089 115915366 -26356078 - AluJb SINE Alu -23 289 11 1468 313 82 50 chr9 115915366 115916120 -26355324 - ERVL LTR ERVL -1066 4698 3889 1217 159 62 126 chr9 115916120 115916485 -26354959 - MLT1A1 LTR MaLR 0 365 25 2161 114 10 0 chr9 115916485 115916782 -26354662 - AluSx SINE Alu -12 300 1 1217 159 62 126 chr9 115916782 115916806 -26354638 - MLT1A1 LTR MaLR -340 25 1 1468 313 82 50 chr9 115916806 115916886 -26354558 - ERVL LTR ERVL -1875 3889 3813 1016 234 146 3 chr9 115916890 115917266 -26354178 - Charlie2a DNA MER1_type -2108 754 325 227 265 214 17 chr9 115917348 115917465 -26353979 - Charlie2a DNA MER1_type -2642 140 1 891 218 191 47 chr9 115917652 115918060 -26353384 + MLT1D LTR MaLR 21 487 -18 282 280 27 0 chr9 115918254 115918329 -26353115 + MIR SINE MIR 53 129 -133 1619 157 3 77 chr9 115918697 115919009 -26352435 + AluJb SINE Alu 1 289 -23 317 351 82 18 chr9 115919037 115919208 -26352236 - L1M4 LINE L1 -1168 4978 4797 3738 177 78 10 chr9 115919359 115920459 -26350985 + L1MB7 LINE L1 4861 6047 -137 2076 137 0 3 chr9 115920459 115920752 -26350692 - AluSx SINE Alu -20 292 1 3738 177 78 10 chr9 115920752 115920876 -26350568 + L1MB7 LINE L1 6047 6161 -23 23434 159 38 22 chr9 115920886 115927202 -26344242 - L1PA10 LINE L1 -11 6472 24 460 272 125 17 chr9 115927514 115927746 -26343698 - L1M4 LINE L1 -1888 4258 4002 1334 181 115 58 chr9 115927749 115928148 -26343296 + MLT2B1 LTR ERVL 5 426 -94 436 196 14 27 chr9 115928165 115928313 -26343131 + CT-rich Low_complexity Low_complexity 2 147 0 303 308 86 60 chr9 115928777 115929125 -26342319 - L1M4 LINE L1 -3188 2958 2602 2859 13 0 0 chr9 115929245 115929556 -26341888 + AluY SINE Alu 1 311 0 1255 216 8 0 chr9 115931212 115931457 -26339987 + Tigger7 DNA MER2_type 1 247 -486 442 175 12 0 chr9 115931475 115931555 -26339889 + Tigger7 DNA MER2_type 2411 2491 0 1806 211 70 32 chr9 115932069 115932566 -26338878 - MER21B LTR ERV1 -25 838 323 439 242 60 34 chr9 115932593 115932742 -26338702 - MER21B LTR ERV1 -617 246 94 395 292 0 0 chr9 115932782 115932878 -26338566 - MER21B LTR ERV1 -767 96 1 1233 205 40 0 chr9 115935055 115935352 -26336092 + L1MC3 LINE L1 7469 7777 -8 1495 188 38 57 chr9 115935444 115935816 -26335628 + MLT1A1 LTR MaLR 1 365 0 2012 149 42 17 chr9 115935821 115936176 -26335268 + THE1B LTR MaLR 1 364 0 226 263 53 0 chr9 115936408 115936503 -26334941 + L1MC/D LINE L1 1644 1743 -4797 284 176 0 0 chr9 115936587 115936638 -26334806 + L1MC/D LINE L1 4910 4960 -1580 2138 165 48 33 chr9 115936638 115937098 -26334346 + MLT1C LTR MaLR 1 467 0 1546 212 28 11 chr9 115937125 115937483 -26333961 + MLT1A1 LTR MaLR 2 365 0 540 288 95 18 chr9 115937533 115938297 -26333147 + L1MC/D LINE L1 5118 5938 -748 340 324 7 48 chr9 115938486 115938631 -26332813 + L2 LINE L2 3134 3272 0 1711 156 56 70 chr9 115938842 115939310 -26332134 + MER41B LTR ERV1 100 467 -11 21 0 0 0 chr9 115939625 115939646 -26331798 + AT_rich Low_complexity Low_complexity 1 21 0 2245 110 0 0 chr9 115939649 115939941 -26331503 + AluSg SINE Alu 1 292 -18 418 345 24 12 chr9 115940458 115940626 -26330818 - MIR3 SINE MIR -24 184 15 773 249 99 67 chr9 115941449 115941762 -26329682 - L2 LINE L2 -1717 1597 1275 739 248 39 143 chr9 115941763 115942250 -26329194 + L2 LINE L2 2597 3002 -311 2360 85 0 3 chr9 115942250 115942543 -26328901 - AluSc SINE Alu -17 292 1 739 248 39 143 chr9 115942543 115942671 -26328773 + L2 LINE L2 3002 3142 -171 453 186 59 0 chr9 115942673 115942775 -26328669 + Tigger5 DNA MER2_type 2216 2323 0 544 200 48 55 chr9 115942775 115942920 -26328524 + L2 LINE L2 3169 3312 -1 1067 121 50 0 chr9 115943239 115943437 -26328007 + L1MA8 LINE L1 6084 6291 0 2370 90 3 0 chr9 115943441 115943741 -26327703 + AluSg SINE Alu 1 301 -9 241 231 39 0 chr9 115944400 115944452 -26326992 + MIR3 SINE MIR 7 60 -148 4473 190 63 37 chr9 115945856 115947034 -26324410 - L1MA10 LINE L1 -7 6327 5086 2347 85 0 22 chr9 115947034 115947351 -26324093 - AluSg SINE Alu 0 310 1 4473 190 63 37 chr9 115947351 115947901 -26323543 - L1MA10 LINE L1 -1248 5086 4552 1238 219 37 64 chr9 115947901 115948061 -26323383 + MSTD LTR MaLR 1 164 -232 3813 33 9 0 chr9 115948061 115948513 -26322931 + L1PA5 LINE L1 5690 6145 -9 1238 219 37 64 chr9 115948513 115948759 -26322685 + MSTD LTR MaLR 164 396 0 1138 187 26 64 chr9 115948759 115949102 -26322342 - L1MA10 LINE L1 -1590 4556 4227 2871 144 15 4 chr9 115949103 115949583 -26321861 + Tigger1 DNA MER2_type 3 487 -1931 755 172 16 0 chr9 115949583 115949705 -26321739 + AluJb SINE Alu 1 124 -188 2349 70 0 33 chr9 115949715 115950016 -26321428 - AluY SINE Alu -20 291 1 5167 129 17 8 chr9 115950026 115950887 -26320557 + Tigger1 DNA MER2_type 478 1346 -1072 837 129 89 0 chr9 115950890 115951037 -26320407 + AluSp SINE Alu 150 307 0 3375 106 8 4 chr9 115951040 115951529 -26319915 + L1PA13 LINE L1 5668 6158 -5 961 231 73 25 chr9 115951529 115951669 -26319775 - L1M4 LINE L1 -1663 5294 5162 1628 170 0 51 chr9 115951669 115951780 -26319664 - AluSx SINE Alu -16 296 181 2346 87 0 0 chr9 115951780 115952067 -26319377 - AluSc SINE Alu -21 288 2 1628 170 0 51 chr9 115952067 115952267 -26319177 - AluSx SINE Alu -131 181 1 961 231 73 25 chr9 115952267 115952524 -26318920 - L1M4 LINE L1 -1795 5162 4878 1387 284 38 30 chr9 115952586 115953192 -26318252 - L1M4 LINE L1 -2180 4777 4167 1459 287 62 19 chr9 115953293 115954066 -26317378 - L1M4 LINE L1 -2982 3975 3170 294 29 0 0 chr9 115954083 115954118 -26317326 + (TC)n Simple_repeat Simple_repeat 2 36 0 6633 234 74 25 chr9 115954165 115954321 -26317123 - L1M4 LINE L1 -4606 2353 2206 1556 209 17 0 chr9 115954321 115954608 -26316836 - AluJo SINE Alu -20 292 1 6633 234 74 25 chr9 115954608 115954785 -26316659 - L1M4 LINE L1 -4753 2206 2039 1852 130 84 68 chr9 115954785 115954928 -26316516 - THE1C LTR MaLR 0 375 236 2399 114 0 0 chr9 115954928 115955236 -26316208 + AluSg SINE Alu 1 308 -2 1852 130 84 68 chr9 115955236 115955461 -26315983 - THE1C LTR MaLR -139 236 1 6633 234 74 25 chr9 115955461 115957377 -26314067 - L1M4 LINE L1 -4920 2039 8 196 231 167 26 chr9 115959105 115959183 -26312261 + MIR SINE MIR 82 170 -92 1407 220 61 58 chr9 115959197 115959279 -26312165 + MSTD LTR MaLR 1 81 -315 3571 136 4 4 chr9 115959279 115959793 -26311651 - MER75 DNA T2_type 0 514 1 1407 220 61 58 chr9 115959793 115960105 -26311339 + MSTD LTR MaLR 81 396 0 305 277 68 34 chr9 115960486 115960663 -26310781 - MARNA DNA Mariner -390 196 14 32 0 0 0 chr9 115960744 115960776 -26310668 + AT_rich Low_complexity Low_complexity 1 32 0 289 258 105 48 chr9 115961400 115961524 -26309920 + MIR SINE MIR 48 178 -84 1406 204 39 14 chr9 115961567 115961847 -26309597 + AluJo SINE Alu 1 287 -25 8613 35 13 4 chr9 115962174 115963717 -26307727 + L1PA6 LINE L1 4335 5891 -263 632 240 77 69 chr9 115963722 115964075 -26307369 - MSTB2 LTR MaLR -80 377 4 1205 186 20 4 chr9 115964077 115964324 -26307120 + L1MB3 LINE L1 5932 6182 -1 3314 103 14 2 chr9 115964618 115965047 -26306397 - MER57B LTR ERV1 0 434 1 242 378 74 20 chr9 115965196 115965601 -26305843 - L2 LINE L2 -1093 2221 1795 542 269 28 7 chr9 115965733 115965878 -26305566 - L1ME LINE L1 -437 5684 5537 806 274 71 87 chr9 115965900 115966419 -26305025 + MLT1J LTR MaLR 1 511 0 1893 132 15 0 chr9 115966602 115966875 -26304569 + AluJb SINE Alu 11 287 -25 2362 79 16 10 chr9 115966902 115967207 -26304237 + AluSc SINE Alu 1 307 -2 1712 239 21 5 chr9 115967425 115967810 -26303634 - MER93a LTR ERV1 0 402 12 231 348 54 22 chr9 115967888 115967980 -26303464 - L2 LINE L2 -52 3220 3126 1716 157 27 30 chr9 115968159 115968459 -26302985 - AluSx SINE Alu -10 302 4 2412 93 0 6 chr9 115969521 115969832 -26301612 + AluSc SINE Alu 1 309 0 378 0 0 0 chr9 115970001 115970043 -26301401 + (TG)n Simple_repeat Simple_repeat 1 42 0 234 0 0 0 chr9 115970042 115970068 -26301376 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2072 109 0 0 chr9 115970069 115970344 -26301100 - AluSx SINE Alu -37 275 1 2006 156 15 3 chr9 115970346 115970673 -26300771 - MER41D LTR ERV1 -182 375 45 283 156 0 0 chr9 115970661 115970706 -26300738 - U2 snRNA snRNA -143 45 1 * 441 127 0 0 chr9 115970705 115970768 -26300676 - MER41D LTR ERV1 -494 63 1 329 137 0 0 chr9 115970772 115970823 -26300621 - L1MB7 LINE L1 -35 6149 6099 2120 161 13 30 chr9 115970823 115971157 -26300287 - MER47A DNA MER2_type -1957 366 37 1872 131 0 67 chr9 115971157 115971470 -26299974 + AluSx SINE Alu 1 292 -20 2120 161 13 30 chr9 115971470 115971507 -26299937 - MER47A DNA MER2_type -2286 37 1 1505 183 28 21 chr9 115971988 115972277 -26299167 - AluJo SINE Alu -17 295 5 499 230 20 92 chr9 115972308 115972380 -26299064 + MER5A DNA MER1_type 2 78 -111 1939 93 10 48 chr9 115972380 115972670 -26298774 + AluSq SINE Alu 35 313 0 499 230 20 92 chr9 115972670 115972793 -26298651 + MER5A DNA MER1_type 78 183 -6 203 133 0 0 chr9 115973109 115973139 -26298305 + (TG)n Simple_repeat Simple_repeat 1 30 0 1921 145 0 10 chr9 115973139 115973429 -26298015 - AluSq SINE Alu -26 287 1 180 172 31 62 chr9 115973849 115973913 -26297531 + MIR SINE MIR 67 128 -134 309 299 152 23 chr9 115974051 115974268 -26297176 + MIR SINE MIR 1 245 -17 1530 204 10 3 chr9 115975094 115975407 -26296037 - LTR5 LTR ERVK -654 315 1 946 282 109 36 chr9 115976088 115976463 -26294981 + LTR16A LTR ERVL 1 410 -40 2499 124 26 126 chr9 115976463 115976971 -26294473 + MSTB2 LTR MaLR 1 457 0 946 282 109 36 chr9 115976971 115977006 -26294438 + LTR16A LTR ERVL 410 441 -9 2553 263 69 33 chr9 115977010 115978445 -26292999 - L1ME LINE L1 -3338 2742 1360 1771 181 0 7 chr9 115978445 115978737 -26292707 - AluJb SINE Alu -22 290 1 2553 263 69 33 chr9 115978737 115979870 -26291574 - L1ME LINE L1 -4720 1360 77 381 22 0 0 chr9 115979870 115979916 -26291528 + (TG)n Simple_repeat Simple_repeat 2 47 0 2553 263 69 33 chr9 115979916 115979985 -26291459 - L1ME LINE L1 -6003 77 12 254 278 110 16 chr9 115980015 115980206 -26291238 - L1ME4a LINE L1 -48 6073 5865 1618 186 29 23 chr9 115980296 115980602 -26290842 + AluJb SINE Alu 1 308 -4 294 182 45 30 chr9 115980608 115980674 -26290770 + MLT1J LTR MaLR 109 175 -336 253 256 12 37 chr9 115980992 115981074 -26290370 - L1ME4a LINE L1 -520 5601 5522 560 261 68 97 chr9 115981214 115981525 -26289919 + L2 LINE L2 2958 3259 -54 717 211 11 79 chr9 115981665 115981855 -26289589 + MER5A DNA MER1_type 2 178 -11 34 42 0 0 chr9 115982606 115982654 -26288790 + AT_rich Low_complexity Low_complexity 1 48 0 1545 160 85 7 chr9 115982745 115983026 -26288418 - AluSx SINE Alu -9 303 1 328 284 45 45 chr9 115983076 115983231 -26288213 + MER117 DNA MER1_type 6 160 -37 31 0 0 0 chr9 115983620 115983651 -26287793 + AT_rich Low_complexity Low_complexity 1 31 0 192 200 0 0 chr9 115983773 115983823 -26287621 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 447 224 0 10 chr9 115983857 115983955 -26287489 - L1MC4a LINE L1 -1877 5931 5835 306 250 0 80 chr9 115987927 115988027 -26283417 + L1MC4 LINE L1 6614 6705 -1337 243 177 0 0 chr9 115988027 115988089 -26283355 + (TA)n Simple_repeat Simple_repeat 2 63 0 2356 80 3 3 chr9 115988623 115988925 -26282519 + AluY SINE Alu 1 302 -9 827 156 15 0 chr9 115989265 115989400 -26282044 + FLAM_C SINE Alu 1 137 -6 955 283 74 30 chr9 115990556 115990892 -26280552 + MLT1I LTR MaLR 59 409 0 1962 153 0 3 chr9 115991898 115992193 -26279251 + AluJb SINE Alu 1 294 -18 204 40 0 0 chr9 115992264 115992289 -26279155 + (A)n Simple_repeat Simple_repeat 1 25 0 229 301 46 69 chr9 115992329 115992420 -26279024 + HAL1b LINE L1 440 527 -821 1928 125 53 0 chr9 115992420 115992701 -26278743 + AluSq SINE Alu 1 296 -17 229 301 46 69 chr9 115992701 115992782 -26278662 + HAL1b LINE L1 527 608 -740 229 316 13 0 chr9 115992784 115992860 -26278584 + GA-rich Low_complexity Low_complexity 5 81 0 1758 168 0 59 chr9 115993228 115993550 -26277894 - AluJo SINE Alu -9 303 1 419 292 26 129 chr9 115993815 115994157 -26277287 + L2 LINE L2 189 495 -2819 2858 155 54 23 chr9 115994198 115994720 -26276724 - MER68 LTR ERV1 -22 540 3 5553 297 63 23 chr9 115994720 115997288 -26274156 + L2 LINE L2 601 3271 -42 1648 147 43 83 chr9 115999207 115999300 -26272144 - MLT2B2 LTR ERVL -200 315 220 1737 120 35 14 chr9 115999300 115999584 -26271860 + L1MA2 LINE L1 6014 6303 -1 1648 147 43 83 chr9 115999584 115999817 -26271627 - MLT2B2 LTR ERVL -295 220 2 433 272 0 9 chr9 115999817 115999931 -26271513 + MLT1E3 LTR MaLR 508 620 -4 446 146 12 0 chr9 116000218 116000300 -26271144 + (TA)n Simple_repeat Simple_repeat 1 83 0 358 234 0 43 chr9 116000301 116000395 -26271049 - L1MC4 LINE L1 -1339 6703 6614 279 114 0 0 chr9 116002335 116002379 -26269065 + (TG)n Simple_repeat Simple_repeat 1 44 0 703 324 50 29 chr9 116003222 116003885 -26267559 + L1MA9 LINE L1 5622 6298 -14 342 0 0 0 chr9 116004317 116004355 -26267089 + (CA)n Simple_repeat Simple_repeat 2 39 0 2009 197 33 84 chr9 116004801 116005449 -26265995 - LTR6A LTR ERV1 0 564 1 23 33 0 0 chr9 116005845 116005875 -26265569 + GC_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr9 116005977 116006019 -26265425 + GC_rich Low_complexity Low_complexity 1 42 0 264 100 0 0 chr9 116007778 116007818 -26263626 + (TG)n Simple_repeat Simple_repeat 1 40 0 1065 329 15 34 chr9 116008663 116009280 -26262164 + L1MA7 LINE L1 5622 6226 -65 405 0 0 0 chr9 116009759 116009804 -26261640 + (CA)n Simple_repeat Simple_repeat 2 46 0 246 105 0 0 chr9 116011827 116011865 -26259579 + (TG)n Simple_repeat Simple_repeat 1 38 0 924 308 28 64 chr9 116012655 116013324 -26258120 + L1MA7 LINE L1 5582 6226 -65 902 300 73 18 chr9 116013748 116014431 -26257013 + L1MA8 LINE L1 5492 6231 -60 201 94 0 0 chr9 116014431 116014463 -26256981 + (TA)n Simple_repeat Simple_repeat 2 33 0 1654 150 3 55 chr9 116015216 116015523 -26255921 + AluJb SINE Alu 1 291 -21 1672 174 47 17 chr9 116015523 116015885 -26255559 + L1MA6 LINE L1 5778 6150 -150 488 171 12 0 chr9 116015885 116015967 -26255477 + FRAM/FAM SINE Alu 1 82 -94 1003 171 17 0 chr9 116015971 116016152 -26255292 + L1MA6 LINE L1 6117 6300 0 2654 150 12 24 chr9 116016165 116016297 -26255147 + L1MC1 LINE L1 5845 5977 -356 1596 185 7 10 chr9 116016297 116016605 -26254839 + AluJo SINE Alu 1 307 -5 2654 150 12 24 chr9 116016605 116016966 -26254478 + L1MC1 LINE L1 5977 6332 -1 260 303 52 45 chr9 116017435 116017590 -26253854 + MIR SINE MIR 86 241 -21 4290 115 8 5 chr9 116017984 116018584 -26252860 + LTR43 LTR ERV1 1 602 0 1720 170 88 20 chr9 116018768 116019110 -26252334 - MLT1A1 LTR MaLR 0 365 1 189 121 0 0 chr9 116019144 116019177 -26252267 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 211 200 0 0 chr9 116022638 116022683 -26248761 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 129 0 0 chr9 116023545 116023576 -26247868 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1874 251 83 11 chr9 116023587 116024120 -26247324 - MLT1E2 LTR MaLR 0 626 56 2152 112 3 0 chr9 116024350 116024655 -26246789 + AluY SINE Alu 1 306 -5 481 281 89 15 chr9 116025171 116025374 -26246070 + MLT1J2 LTR MaLR 1 218 -232 219 36 0 0 chr9 116026369 116026397 -26245047 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 195 214 18 54 chr9 116026507 116026563 -26244881 + MER5A DNA MER1_type 130 183 -6 2031 123 3 10 chr9 116026695 116026997 -26244447 - AluSq SINE Alu -13 300 1 190 172 15 88 chr9 116027610 116027687 -26243757 + MIR SINE MIR 58 129 -79 350 309 148 18 chr9 116027828 116028045 -26243399 + MIR SINE MIR 1 245 -17 218 205 0 0 chr9 116028428 116028467 -26242977 + (TG)n Simple_repeat Simple_repeat 2 40 0 1211 223 37 74 chr9 116029158 116029535 -26241909 + MLT1A1 LTR MaLR 2 364 -1 186 43 0 0 chr9 116032940 116032963 -26238481 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 2049 117 3 0 chr9 116032965 116033256 -26238188 - AluSx SINE Alu -20 292 1 337 163 12 23 chr9 116033256 116033342 -26238102 + MER96B DNA MER1_type? 97 181 -236 601 126 14 154 chr9 116034702 116034845 -26236599 + FLAM_C SINE Alu 3 125 -8 2056 123 0 3 chr9 116086753 116087053 -26184391 + AluSx SINE Alu 3 301 -11 306 274 268 0 chr9 116087664 116087821 -26183623 + MIR SINE MIR 61 259 -3 228 362 9 17 chr9 116088018 116088134 -26183310 + MIR SINE MIR 92 206 -56 826 122 0 8 chr9 116088187 116088310 -26183134 + FLAM_C SINE Alu 1 122 -21 360 0 0 0 chr9 116088310 116088350 -26183094 + (T)n Simple_repeat Simple_repeat 1 40 0 2136 75 7 0 chr9 116088520 116088802 -26182642 - AluY SINE Alu -27 284 1 35 0 0 0 chr9 116088803 116088838 -26182606 + AT_rich Low_complexity Low_complexity 1 35 0 966 157 6 6 chr9 116088840 116088999 -26182445 + AluJb SINE Alu 134 292 -20 21 71 0 0 chr9 116089665 116089707 -26181737 + AT_rich Low_complexity Low_complexity 1 42 0 803 131 8 0 chr9 116090072 116090194 -26181250 + AluSg/x SINE Alu 177 299 -11 2191 101 0 0 chr9 116091565 116091861 -26179583 - AluSx SINE Alu -16 296 1 2680 219 128 17 chr9 116092016 116092763 -26178681 - L1ME2 LINE L1 -9 6155 5313 574 234 32 6 chr9 116092752 116092910 -26178534 - L1ME2 LINE L1 -1198 4948 4787 * 204 258 161 0 chr9 116092920 116092982 -26178462 + L2 LINE L2 3201 3272 0 2143 123 0 0 chr9 116093062 116093364 -26178080 + AluSx SINE Alu 1 302 -10 1841 138 3 7 chr9 116095055 116095352 -26176092 + AluJb SINE Alu 1 296 -16 719 115 0 0 chr9 116096379 116096475 -26174969 + AluSg/x SINE Alu 191 286 -23 1538 181 10 23 chr9 116096565 116096869 -26174575 - AluJb SINE Alu -12 300 1 340 309 122 8 chr9 116097337 116097530 -26173914 - MIR SINE MIR -3 259 39 599 172 123 0 chr9 116097667 116097702 -26173742 - FLAM_A SINE Alu -174 137 108 1798 91 107 4 chr9 116097702 116097965 -26173479 + AluSq SINE Alu 1 290 -23 599 172 123 0 chr9 116097965 116098051 -26173393 - FLAM_A SINE Alu -203 108 1 317 285 42 73 chr9 116098178 116098343 -26173101 - MER20B DNA MER1_type -608 175 16 1649 163 112 13 chr9 116098387 116098700 -26172744 - MER2 DNA MER2_type 0 344 1 313 183 214 0 chr9 116098800 116098882 -26172562 + MIR SINE MIR 63 162 -46 1210 123 0 0 chr9 116099408 116099579 -26171865 - AluSg/x SINE Alu -14 298 128 243 33 0 0 chr9 116099582 116099612 -26171832 - AluY SINE Alu -267 32 3 214 235 20 0 chr9 116100159 116100210 -26171234 + L2 LINE L2 3221 3272 0 323 228 193 26 chr9 116102918 116103032 -26168412 - MIR3 SINE MIR -39 169 37 791 314 132 27 chr9 116103421 116104128 -26167316 - L2 LINE L2 0 3313 2516 239 333 35 35 chr9 116104176 116104290 -26167154 + MIR SINE MIR 44 157 -105 1555 214 69 0 chr9 116104334 116104652 -26166792 - MER7A DNA MER2_type -5 341 4 910 295 77 18 chr9 116104787 116105279 -26166165 + L1ME4a LINE L1 5582 6102 -19 353 275 143 19 chr9 116105750 116105965 -26165479 + MIR SINE MIR 20 262 0 * 399 284 8 16 chr9 116105959 116106088 -26165356 - MIR SINE MIR -63 145 30 601 226 86 27 chr9 116106732 116106918 -26164526 + MIR SINE MIR 56 252 -10 2169 122 0 0 chr9 116107005 116107345 -26164099 - AluSx SINE Alu 0 340 1 1568 167 40 0 chr9 116107478 116107753 -26163691 - AluJb SINE Alu -22 290 5 605 227 31 76 chr9 116107931 116108073 -26163371 - L1MC4a LINE L1 -1845 5963 5833 2101 81 49 0 chr9 116108073 116108357 -26163087 + AluSx SINE Alu 1 298 -14 605 227 31 76 chr9 116108357 116108439 -26163005 - L1MC4a LINE L1 -1975 5833 5749 2005 83 0 50 chr9 116109040 116109386 -26162058 + AluSg SINE Alu 1 310 0 1480 153 66 28 chr9 116109402 116109690 -26161754 + AluJo SINE Alu 14 312 0 584 144 53 0 chr9 116109706 116109838 -26161606 + GA-rich Low_complexity Low_complexity 2 140 0 321 228 181 16 chr9 116109878 116110005 -26161439 + L1ME4a LINE L1 5969 6116 -5 2207 75 0 0 chr9 116110150 116110430 -26161014 + AluSq SINE Alu 21 300 -13 247 196 22 0 chr9 116110943 116110989 -26160455 + MER5A DNA MER1_type 29 75 -114 2165 125 0 0 chr9 116110989 116111332 -26160112 + AluSx SINE Alu 1 343 0 217 178 22 0 chr9 116111335 116111380 -26160064 + MER5A DNA MER1_type 61 106 -83 781 213 51 15 chr9 116111613 116111810 -26159634 - MER46C DNA MER2_type 0 338 135 2147 114 0 0 chr9 116111864 116112161 -26159283 + AluSg SINE Alu 1 297 -13 370 251 108 91 chr9 116112164 116112395 -26159049 - L1ME4a LINE L1 -74 6047 5813 411 297 45 14 chr9 116112638 116112860 -26158584 - L1ME4a LINE L1 -16 6105 5877 2367 90 0 0 chr9 116113023 116113356 -26158088 - AluSx SINE Alu 0 333 1 290 304 116 43 chr9 116113561 116113801 -26157643 + MIR SINE MIR 2 262 0 1507 235 34 49 chr9 116113923 116114391 -26157053 + L1ME3 LINE L1 5448 5908 -262 653 224 166 109 chr9 116114414 116114919 -26156525 - MLT1H LTR MaLR -15 534 1 317 260 134 39 chr9 116114919 116115150 -26156294 + L1ME3 LINE L1 5904 6156 -6 546 238 146 51 chr9 116115150 116115549 -26155895 - MLT1J LTR MaLR -36 475 5 1924 139 7 0 chr9 116115550 116115837 -26155607 - AluSx SINE Alu -20 292 4 26 82 0 0 chr9 116116016 116116077 -26155367 + AT_rich Low_complexity Low_complexity 1 61 0 491 290 101 6 chr9 116116692 116116861 -26154583 + MIR SINE MIR 20 204 -58 1775 52 43 4 chr9 116117010 116117241 -26154203 + AluY SINE Alu 1 240 -71 1886 139 0 3 chr9 116117341 116117629 -26153815 - AluSx SINE Alu -25 287 1 548 315 86 14 chr9 116117889 116118111 -26153333 - MIR SINE MIR -12 250 13 195 42 0 0 chr9 116118393 116118417 -26153027 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1883 151 7 0 chr9 116118683 116118975 -26152469 - AluJb SINE Alu -18 294 1 2285 195 9 9 chr9 116119467 116119909 -26151535 + L1MB5 LINE L1 5588 6029 -145 2262 182 25 2 chr9 116119942 116120343 -26151101 + MSTB LTR MaLR 2 411 -15 597 176 129 18 chr9 116120347 116120490 -26150954 + L1MB5 LINE L1 6008 6166 0 2749 13 0 0 chr9 116120599 116120909 -26150535 - AluYb8 SINE Alu -8 310 1 22 0 0 0 chr9 116120911 116120933 -26150511 + AT_rich Low_complexity Low_complexity 1 22 0 344 250 0 0 chr9 116121033 116121101 -26150343 + Charlie1 DNA MER1_type 2 69 -2692 246 203 25 13 chr9 116121145 116121224 -26150220 + CT-rich Low_complexity Low_complexity 3 82 0 1307 165 102 8 chr9 116121225 116121479 -26149965 - AluJb SINE Alu 0 312 35 1056 192 23 8 chr9 116121487 116121747 -26149697 + Charlie1 DNA MER1_type 2381 2644 -117 1901 119 0 60 chr9 116121769 116122087 -26149357 - AluSq SINE Alu -14 299 1 525 144 44 111 chr9 116122090 116122270 -26149174 + Charlie1 DNA MER1_type 2590 2757 -4 225 318 71 0 chr9 116122424 116122509 -26148935 - L2 LINE L2 -1 3271 3181 394 315 23 0 chr9 116122942 116123072 -26148372 + MIR3 SINE MIR 36 168 -40 208 163 0 47 chr9 116123174 116123217 -26148227 + MIR3 SINE MIR 165 205 -3 23 68 0 0 chr9 116123817 116123861 -26147583 + AT_rich Low_complexity Low_complexity 1 44 0 437 167 94 0 chr9 116124396 116124492 -26146952 + MIR SINE MIR 84 188 -74 1058 257 13 0 chr9 116124495 116124584 -26146860 - MIR SINE MIR -21 241 155 1338 102 49 82 chr9 116124584 116124693 -26146751 + MER46A DNA MER2_type 1 112 -2619 2140 123 0 0 chr9 116124693 116124994 -26146450 - AluSx SINE Alu -11 301 1 1338 102 49 82 chr9 116124994 116125128 -26146316 + MER46A DNA MER2_type 112 236 0 1058 257 13 0 chr9 116125128 116125275 -26146169 - MIR SINE MIR -107 155 2 2243 93 3 0 chr9 116125846 116126146 -26145298 - AluSp SINE Alu -12 301 1 278 216 152 45 chr9 116126440 116126600 -26144844 - MIR SINE MIR -70 192 26 347 297 0 10 chr9 116126731 116126832 -26144612 - MIR3 SINE MIR -36 172 73 1931 82 23 36 chr9 116126957 116127263 -26144181 - AluSx SINE Alu -10 302 1 350 293 0 0 chr9 116128046 116128128 -26143316 + L2 LINE L2 3191 3272 0 2237 88 0 0 chr9 116128148 116128443 -26143001 - AluSx SINE Alu -17 295 1 234 322 141 51 chr9 116128585 116128840 -26142604 - L3 LINE CR1 -40 1537 1260 674 313 78 6 chr9 116128996 116129341 -26142103 + L2 LINE L2 2229 2598 -716 742 227 10 15 chr9 116129344 116129595 -26141849 + MLT1H LTR MaLR 1 388 -207 2019 72 0 4 chr9 116129595 116129857 -26141587 - AluSg SINE Alu -46 264 4 423 234 13 0 chr9 116129860 116129937 -26141507 - MER7A DNA MER2_type -269 79 2 321 319 44 114 chr9 116129942 116130172 -26141272 + L2 LINE L2 3014 3224 -48 1251 146 19 0 chr9 116130172 116130377 -26141067 + MER3 DNA MER1_type 1 209 0 321 319 44 114 chr9 116130377 116130419 -26141025 + L2 LINE L2 3224 3267 -5 2005 176 61 5 chr9 116130554 116130929 -26140515 - MSTD LTR MaLR 0 396 1 725 187 0 8 chr9 116131539 116131662 -26139782 + FLAM_C SINE Alu 2 123 -20 2221 97 0 31 chr9 116131668 116131989 -26139455 - AluY SINE Alu 0 311 1 22 35 0 0 chr9 116131995 116132024 -26139420 + AT_rich Low_complexity Low_complexity 1 29 0 802 204 233 16 chr9 116132265 116132574 -26138870 + L2 LINE L2 2937 3312 -1 1225 165 47 19 chr9 116132757 116133187 -26138257 - LTR54 LTR ERV1 -5 505 4 2057 135 0 22 chr9 116133240 116133559 -26137885 - AluSx SINE Alu 0 312 1 213 247 141 24 chr9 116133700 116133785 -26137659 + MER5A DNA MER1_type 57 151 -38 201 204 23 0 chr9 116133991 116134035 -26137409 + L2 LINE L2 2920 2964 -349 2182 108 16 0 chr9 116134211 116134518 -26136926 - AluSx SINE Alu 0 312 1 565 285 50 46 chr9 116134833 116135093 -26136351 - MIR SINE MIR -1 261 1 2153 125 0 0 chr9 116135448 116135760 -26135684 + AluJb SINE Alu 1 312 0 23 0 0 0 chr9 116136120 116136143 -26135301 + AT_rich Low_complexity Low_complexity 1 23 0 321 229 220 0 chr9 116136148 116136257 -26135187 + MIR SINE MIR 33 165 -97 299 232 131 26 chr9 116136270 116136442 -26135002 - MIR SINE MIR -11 251 23 263 288 12 0 chr9 116136474 116136554 -26134890 + MIR SINE MIR 168 248 -14 27 62 0 0 chr9 116136815 116136863 -26134581 + GC_rich Low_complexity Low_complexity 1 48 0 489 209 192 57 chr9 116137156 116137333 -26134111 + MIR SINE MIR 14 214 -48 235 270 104 35 chr9 116138105 116138220 -26133224 - MIR SINE MIR -50 212 90 205 167 71 0 chr9 116138953 116138995 -26132449 + MIR SINE MIR 91 135 -73 21 0 0 0 chr9 116139007 116139028 -26132416 + AT_rich Low_complexity Low_complexity 1 21 0 2048 100 7 27 chr9 116139034 116139335 -26132109 - AluSx SINE Alu -17 295 1 1002 254 193 23 chr9 116139433 116139705 -26131739 - L2 LINE L2 -1 3312 3087 207 0 0 0 chr9 116139705 116139728 -26131716 + (CA)n Simple_repeat Simple_repeat 2 24 0 1002 254 193 23 chr9 116139728 116140259 -26131185 - L2 LINE L2 -226 3087 2358 1733 157 13 16 chr9 116140328 116140640 -26130804 + AluJb SINE Alu 1 311 -1 2302 103 0 0 chr9 116140647 116140957 -26130487 + AluSx SINE Alu 3 312 0 277 262 85 21 chr9 116140965 116141106 -26130338 + L1M4 LINE L1 2346 2495 -3651 821 290 46 20 chr9 116141114 116141459 -26129985 - L2 LINE L2 -2264 1050 697 322 226 27 104 chr9 116141880 116142064 -26129380 - MIR SINE MIR -57 151 16 1442 201 27 3 chr9 116142083 116142381 -26129063 - AluJb SINE Alu -7 305 1 251 257 29 0 chr9 116142530 116142600 -26128844 - MLT1K LTR MaLR -3 585 514 310 255 83 35 chr9 116142742 116142842 -26128602 - L1M4 LINE L1 -1954 4192 4081 2265 87 0 3 chr9 116142842 116143140 -26128304 - AluSq SINE Alu -16 297 1 310 255 83 35 chr9 116143140 116143184 -26128260 - L1M4 LINE L1 -2065 4081 4041 777 239 120 31 chr9 116143185 116143444 -26128000 - L2 LINE L2 -2 3311 3030 * 2747 211 54 50 chr9 116143434 116143447 -26127997 - L2 LINE L2 -611 2703 2692 2147 90 3 7 chr9 116143447 116143746 -26127698 + AluSg SINE Alu 1 298 -12 2747 211 54 50 chr9 116143746 116144467 -26126977 - L2 LINE L2 -622 2692 1966 629 193 44 22 chr9 116144467 116144602 -26126842 - L1MD2 LINE L1 -217 6142 6005 361 275 8 11 chr9 116144663 116144804 -26126640 - L1M4 LINE L1 -2401 3745 3608 838 173 0 0 chr9 116144935 116145074 -26126370 - FRAM SINE Alu -14 162 24 513 0 0 0 chr9 116145111 116145168 -26126276 + (TA)n Simple_repeat Simple_repeat 1 57 0 1881 162 0 3 chr9 116145189 116145485 -26125959 + AluJo SINE Alu 1 295 -17 1831 132 4 0 chr9 116145592 116145864 -26125580 - AluSx SINE Alu -39 273 1 322 264 27 18 chr9 116145865 116145975 -26125469 - L1MEd LINE L1 -6005 114 4 841 192 0 0 chr9 116146178 116146354 -26125090 + FRAM SINE Alu 1 176 0 1020 285 16 0 chr9 116146383 116146625 -26124819 - MIR SINE MIR -15 247 2 341 217 0 0 chr9 116146947 116147007 -26124437 + MIR SINE MIR 30 89 -119 741 174 0 36 chr9 116147053 116147191 -26124253 + FLAM_C SINE Alu 5 137 -6 273 204 61 0 chr9 116147196 116147245 -26124199 - L2 LINE L2 -7 3306 3255 271 295 0 0 chr9 116147267 116147328 -26124116 - tRNA-Gly-GGC tRNA tRNA -6 68 8 186 313 261 8 chr9 116147330 116147464 -26123980 + L3 LINE CR1 1407 1574 -3 425 245 10 10 chr9 116147637 116147739 -26123705 - MER117 DNA MER1_type 0 197 96 3140 112 45 4 chr9 116148152 116148618 -26122826 + MER31A LTR ERV1 1 485 0 352 285 99 96 chr9 116148688 116149000 -26122444 - L2 LINE L2 -22 3250 2938 263 208 122 16 chr9 116149028 116149124 -26122320 - HAL1b LINE L1 -74 1274 1182 194 288 131 39 chr9 116149406 116149559 -26121885 - L2 LINE L2 0 3272 3106 360 0 0 0 chr9 116149625 116149665 -26121779 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr9 116150512 116150535 -26120909 + AT_rich Low_complexity Low_complexity 1 23 0 1609 191 16 0 chr9 116150615 116150919 -26120525 + AluJb SINE Alu 2 310 -2 2217 86 16 3 chr9 116151054 116151357 -26120087 + AluSx SINE Alu 6 312 0 1642 169 24 14 chr9 116151357 116151653 -26119791 + AluSq SINE Alu 1 299 -14 230 295 62 8 chr9 116151705 116151834 -26119610 - L1MC/D LINE L1 -1944 5864 5729 2281 225 115 38 chr9 116151967 116152764 -26118680 - L1MD3 LINE L1 -2 8040 7196 1883 271 78 23 chr9 116152778 116153250 -26118194 - L1MC4 LINE L1 -955 7087 6559 2152 131 0 0 chr9 116153250 116153555 -26117889 - AluSx SINE Alu -7 305 1 1883 271 78 23 chr9 116153555 116153813 -26117631 - L1MC4 LINE L1 -1483 6559 6317 338 304 9 36 chr9 116155013 116155125 -26116319 + MIR3 SINE MIR 3 111 -97 853 121 0 0 chr9 116155285 116155409 -26116035 - FRAM SINE Alu -16 160 37 610 180 0 0 chr9 116155530 116155630 -26115814 + AluJb SINE Alu 144 243 -69 1087 143 0 7 chr9 116155971 116156125 -26115319 - AluSc SINE Alu -9 300 148 335 173 0 0 chr9 116156128 116156180 -26115264 - AluS SINE Alu -210 92 41 446 235 84 42 chr9 116158092 116158211 -26113233 + MER63 DNA MER1_type 1 750 -86 265 172 156 16 chr9 116158213 116158277 -26113167 + MER63 DNA MER1_type 978 1050 -11 667 226 0 0 chr9 116158767 116158900 -26112544 - AluSg SINE Alu -176 134 2 596 189 0 0 chr9 116159495 116159601 -26111843 - AluJb SINE Alu -205 107 2 813 161 14 9 chr9 116159603 116159741 -26111703 - L1MB3 LINE L1 -355 5828 5689 405 0 0 0 chr9 116159741 116159786 -26111658 + (TG)n Simple_repeat Simple_repeat 2 46 0 813 161 14 9 chr9 116159786 116159824 -26111620 - L1MB3 LINE L1 -494 5689 5653 2136 125 0 29 chr9 116159856 116160167 -26111277 - AluSx SINE Alu -10 302 1 487 281 109 46 chr9 116160174 116160476 -26110968 - L1MDa LINE L1 -3904 2636 2316 503 335 39 44 chr9 116160585 116160814 -26110630 - HAL1b LINE L1 -488 860 632 2502 84 3 0 chr9 116160814 116161123 -26110321 - AluSp SINE Alu -3 310 1 503 335 39 44 chr9 116161123 116161278 -26110166 - HAL1b LINE L1 -716 632 478 330 322 106 29 chr9 116161293 116161383 -26110061 - HAL1 LINE L1 -1312 1195 1113 1638 181 3 26 chr9 116161383 116161686 -26109758 - AluJo SINE Alu -16 296 1 330 322 106 29 chr9 116161686 116161739 -26109705 - HAL1 LINE L1 -1394 1113 1065 1746 204 3 3 chr9 116161739 116162048 -26109396 - AluJo SINE Alu -3 309 1 330 322 106 29 chr9 116162048 116162176 -26109268 - HAL1 LINE L1 -1442 1065 902 345 174 0 0 chr9 116162327 116162396 -26109048 + (CA)n Simple_repeat Simple_repeat 2 70 0 560 193 18 9 chr9 116162525 116162634 -26108810 - AluJo SINE Alu -135 177 68 1387 164 69 0 chr9 116162634 116162866 -26108578 + AluSx SINE Alu 53 300 -12 498 147 0 0 chr9 116162867 116162942 -26108502 - AluJo SINE Alu -236 76 2 191 242 20 81 chr9 116163365 116163464 -26107980 + L2 LINE L2 3139 3231 -82 1835 96 4 0 chr9 116164271 116164501 -26106943 + AluSp SINE Alu 1 231 -82 412 126 92 143 chr9 116164522 116164604 -26106840 - MER104 DNA Tc2 -1785 113 37 2347 84 3 34 chr9 116164604 116164927 -26106517 + AluSp SINE Alu 1 313 0 412 126 92 143 chr9 116164927 116164963 -26106481 - MER104 DNA Tc2 -1861 37 1 303 327 214 0 chr9 116165422 116165581 -26105863 + L3 LINE CR1 1031 1223 -354 806 245 0 5 chr9 116165610 116165794 -26105650 + MIR SINE MIR 66 248 -14 245 120 20 0 chr9 116166183 116166233 -26105211 - AluJo SINE Alu 0 302 252 1143 151 11 6 chr9 116166233 116166412 -26105032 - AluJo SINE Alu -92 220 41 593 332 17 13 chr9 116168360 116168595 -26102849 - MIR SINE MIR -20 242 7 285 221 117 0 chr9 116168703 116168780 -26102664 + L2 LINE L2 3155 3240 -32 2404 94 0 0 chr9 116169495 116169794 -26101650 - AluSx SINE Alu -13 299 1 2080 104 34 17 chr9 116170265 116170622 -26100822 - L1MB4 LINE L1 0 6180 5818 1017 422 7 10 chr9 116170622 116170923 -26100521 - AluJb SINE Alu -2 300 1 246 315 63 9 chr9 116171557 116171668 -26099776 - L2 LINE L2 0 3272 3156 236 295 88 26 chr9 116172043 116172198 -26099246 + MIR SINE MIR 58 229 -33 * 440 261 176 7 chr9 116172171 116172324 -26099120 - MIR SINE MIR -14 248 70 1262 65 43 21 chr9 116173107 116173293 -26098151 + MER30B DNA MER1_type 1 190 0 296 329 0 0 chr9 116173386 116173459 -26097985 + L2 LINE L2 3241 3313 0 2004 113 0 4 chr9 116174375 116174640 -26096804 + AluSx SINE Alu 41 304 -8 1666 153 27 0 chr9 116175085 116175346 -26096098 - AluJo SINE Alu -10 302 35 519 306 52 31 chr9 116175570 116175799 -26095645 + MIR SINE MIR 5 238 -24 265 261 76 54 chr9 116177330 116177422 -26094022 + MIR SINE MIR 11 104 -158 1853 122 37 65 chr9 116177650 116177971 -26093473 - AluJb SINE Alu 0 312 1 276 218 47 0 chr9 116177975 116178078 -26093366 - L2 LINE L2 -280 3033 2922 438 316 29 6 chr9 116178147 116178318 -26093126 - MIR3 SINE MIR -16 192 18 409 290 19 32 chr9 116178679 116178834 -26092610 - MIR3 SINE MIR -29 179 27 2315 64 61 17 chr9 116178836 116179132 -26092312 - AluSp SINE Alu -4 309 1 2209 72 13 63 chr9 116179135 116179453 -26091991 - AluSg SINE Alu -7 303 2 329 282 7 29 chr9 116179815 116179988 -26091456 + C-rich Low_complexity Low_complexity 1 169 0 2326 104 10 0 chr9 116180393 116180701 -26090743 - AluSx SINE Alu -1 311 1 1694 85 5 13 chr9 116180728 116180952 -26090492 + AluY SINE Alu 82 303 -8 274 122 0 0 chr9 116180959 116181000 -26090444 - tRNA-Glu-GAG tRNA tRNA -34 41 1 2111 101 18 0 chr9 116181065 116181380 -26090064 + AluSq SINE Alu 1 320 0 1344 134 49 91 chr9 116181681 116181848 -26089596 + MER39B LTR ERV1 288 438 -215 4270 197 25 50 chr9 116181848 116182842 -26088602 - LTR5 LTR ERVK 0 969 1 1344 134 49 91 chr9 116182842 116182981 -26088463 + MER39B LTR ERV1 438 581 -72 669 206 0 15 chr9 116183002 116183133 -26088311 + AluJo/FLAM SINE Alu 1 129 -173 2168 140 0 0 chr9 116183135 116183435 -26088009 + AluSx SINE Alu 1 300 -12 241 315 239 18 chr9 116183490 116183817 -26087627 - L2 LINE L2 -2 3311 2913 720 203 15 11 chr9 116183956 116184239 -26087205 + CT-rich Low_complexity Low_complexity 1 284 0 2348 105 3 0 chr9 116184244 116184548 -26086896 - AluSq SINE Alu -8 305 1 2247 121 3 3 chr9 116184549 116184854 -26086590 - AluSx SINE Alu -7 305 1 287 302 10 10 chr9 116185145 116185241 -26086203 + MIR SINE MIR 48 143 -65 1834 209 72 26 chr9 116185241 116185585 -26085859 - L1ME3A LINE L1 -68 6102 5726 2283 111 3 16 chr9 116185585 116185901 -26085543 - AluSx SINE Alu 0 312 1 1834 209 72 26 chr9 116185901 116186059 -26085385 - L1ME3A LINE L1 -444 5726 5577 1304 129 13 47 chr9 116186059 116186291 -26085153 - AluJo SINE Alu -4 308 85 264 59 0 0 chr9 116186306 116186340 -26085104 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 514 208 38 87 chr9 116186373 116186452 -26084992 - L1ME3A LINE L1 -620 5542 5461 2152 96 20 24 chr9 116186452 116186744 -26084700 - AluSg SINE Alu -19 291 1 514 208 38 87 chr9 116186744 116186847 -26084597 - L1ME3A LINE L1 -701 5461 5369 899 136 0 0 chr9 116186987 116187112 -26084332 - FLAM_C SINE Alu -18 125 1 642 220 54 59 chr9 116187126 116187312 -26084132 + MIR3 SINE MIR 24 208 0 1505 238 108 30 chr9 116187327 116187607 -26083837 + MLT1J LTR MaLR 4 337 -174 1848 166 27 0 chr9 116187607 116187903 -26083541 - AluJb SINE Alu -7 305 2 1505 238 108 30 chr9 116187903 116188093 -26083351 + MLT1J LTR MaLR 337 511 0 2156 121 0 7 chr9 116188111 116188416 -26083028 - AluSq SINE Alu -10 303 1 408 301 60 8 chr9 116188425 116188558 -26082886 - L2 LINE L2 -243 3070 2931 733 304 94 31 chr9 116188591 116188973 -26082471 + MLT1K LTR MaLR 164 569 -19 1299 153 124 69 chr9 116189020 116189366 -26082078 + MER47A DNA MER2_type 1 365 -1 356 220 12 184 chr9 116189414 116189582 -26081862 + MIR SINE MIR 4 142 -120 224 280 237 51 chr9 116189576 116189812 -26081632 + L2 LINE L2 2340 2619 -695 * 449 263 72 139 chr9 116189886 116190427 -26081017 + L2 LINE L2 2804 3308 -5 242 252 97 6 chr9 116191251 116191364 -26080080 + MIR SINE MIR 20 143 -65 364 203 98 57 chr9 116191448 116191571 -26079873 - MIR SINE MIR -64 198 71 2223 98 31 0 chr9 116192823 116193109 -26078335 - AluSx SINE Alu -16 296 2 1972 136 3 7 chr9 116193992 116194278 -26077166 - AluJb SINE Alu -13 299 15 396 348 107 9 chr9 116194620 116194844 -26076600 - L3 LINE CR1 -24 1553 1308 351 256 64 24 chr9 116195208 116195333 -26076111 + MIR SINE MIR 13 142 -120 811 133 0 8 chr9 116195341 116195469 -26075975 - L2 LINE L2 0 3313 3187 394 245 9 19 chr9 116195477 116195583 -26075861 + MIR SINE MIR 158 262 0 2607 56 0 3 chr9 116195604 116195906 -26075538 - AluY SINE Alu -10 301 1 180 0 0 0 chr9 116196178 116196198 -26075246 + (CCCCAA)n Simple_repeat Simple_repeat 1 20 0 339 216 199 51 chr9 116196519 116196695 -26074749 + MER5C DNA MER1_type 21 222 -102 1707 156 15 4 chr9 116196728 116196998 -26074446 - AluJb SINE Alu -9 303 31 1176 127 18 0 chr9 116197101 116197267 -26074177 + FRAM SINE Alu 1 162 -14 235 238 155 0 chr9 116197272 116197356 -26074088 + MER5C DNA MER1_type 228 324 0 231 239 114 11 chr9 116197399 116197487 -26073957 - L1ME4a LINE L1 -26 6095 5999 2299 121 0 9 chr9 116197487 116197802 -26073642 + AluSx SINE Alu 1 312 0 203 317 20 50 chr9 116198302 116198403 -26073041 - MIR SINE MIR -7 255 158 2072 121 0 59 chr9 116198494 116198629 -26072815 + AluSx SINE Alu 2 143 -169 2303 115 0 6 chr9 116198629 116198942 -26072502 + AluSq SINE Alu 1 311 -2 2072 121 0 59 chr9 116198942 116199128 -26072316 + AluSx SINE Alu 143 304 -8 372 259 107 0 chr9 116199703 116199815 -26071629 - MIR3 SINE MIR -52 156 33 2473 103 0 0 chr9 116200326 116200638 -26070806 - AluSx SINE Alu 0 312 1 259 274 105 11 chr9 116200677 116200772 -26070672 - MIR SINE MIR -156 106 3 240 257 122 34 chr9 116200865 116201056 -26070388 - MIR SINE MIR -10 252 37 283 320 40 69 chr9 116201308 116201483 -26069961 - MIR3 SINE MIR -16 192 23 347 288 121 24 chr9 116201799 116202030 -26069414 + MIR SINE MIR 4 262 0 269 323 40 0 chr9 116202659 116202758 -26068686 - L2 LINE L2 -1 3271 3169 303 329 89 0 chr9 116202824 116202982 -26068462 - MIR3 SINE MIR -7 201 30 387 276 218 6 chr9 116203098 116203254 -26068190 + MIR SINE MIR 7 195 -67 2519 71 3 0 chr9 116203254 116203562 -26067882 + AluSp SINE Alu 1 309 -4 2417 72 0 3 chr9 116204862 116205154 -26066290 + AluSx SINE Alu 1 291 -21 1031 201 44 68 chr9 116205773 116205948 -26065496 + L1ME3A LINE L1 5840 6005 -165 2244 121 6 10 chr9 116205948 116206261 -26065183 + AluJb SINE Alu 1 312 0 1031 201 44 68 chr9 116206261 116206423 -26065021 + L1ME3A LINE L1 6005 6169 -1 793 138 0 0 chr9 116206527 116206657 -26064787 + L1MB5 LINE L1 6045 6174 0 422 178 0 0 chr9 116206665 116206738 -26064706 + L1MD3 LINE L1 7729 7801 -194 317 240 62 31 chr9 116206790 116206886 -26064558 + MIR3 SINE MIR 58 156 -52 2271 80 25 0 chr9 116207107 116207393 -26064051 - AluSg SINE Alu -17 293 1 2233 110 0 0 chr9 116207906 116208205 -26063239 + AluSx SINE Alu 1 299 -13 2009 106 11 21 chr9 116208208 116208492 -26062952 + AluSx SINE Alu 19 299 -13 180 198 117 108 chr9 116208536 116208587 -26062857 + MIR SINE MIR 139 188 -74 800 145 30 15 chr9 116208587 116208718 -26062726 + FLAM_C SINE Alu 1 133 0 2330 104 0 7 chr9 116208722 116209030 -26062414 + AluSc SINE Alu 1 306 -3 180 198 117 108 chr9 116209030 116209084 -26062360 + MIR SINE MIR 190 250 -12 2295 81 0 17 chr9 116209146 116209443 -26062001 + AluY SINE Alu 1 292 -19 2225 101 0 0 chr9 116209453 116209759 -26061685 + AluSx SINE Alu 4 309 0 1063 138 0 24 chr9 116210269 116210436 -26061008 + FRAM SINE Alu 1 156 -20 209 326 11 11 chr9 116210522 116210611 -26060833 + GA-rich Low_complexity Low_complexity 2 90 0 268 299 8 16 chr9 116211714 116211841 -26059603 + CT-rich Low_complexity Low_complexity 3 128 0 2405 76 7 0 chr9 116211980 116212281 -26059163 + AluSx SINE Alu 5 307 -5 476 271 187 61 chr9 116214075 116214192 -26057252 - Charlie8 DNA MER1_type -84 257 156 2475 50 7 7 chr9 116214192 116214491 -26056953 - AluY SINE Alu -11 300 2 476 271 187 61 chr9 116214491 116214560 -26056884 - Charlie8 DNA MER1_type -185 156 97 1935 117 23 23 chr9 116214560 116214868 -26056576 - AluJb SINE Alu -4 308 1 476 271 187 61 chr9 116214868 116215275 -26056169 - Charlie8 DNA MER1_type -244 97 11 262 254 0 0 chr9 116215600 116215655 -26055789 - AluS SINE Alu -246 57 3 361 232 215 19 chr9 116215972 116216183 -26055261 - MIR SINE MIR -10 252 6 1896 149 32 74 chr9 116216986 116217163 -26054281 - MLT1B LTR MaLR 0 390 207 1914 128 0 49 chr9 116217163 116217468 -26053976 - AluJo SINE Alu -12 300 11 1896 149 32 74 chr9 116217468 116217693 -26053751 - MLT1B LTR MaLR -183 207 5 2026 131 57 0 chr9 116217742 116218025 -26053419 - AluSx SINE Alu -13 299 1 1379 162 0 25 chr9 116218030 116218271 -26053173 - AluJb SINE Alu -10 302 68 414 87 14 14 chr9 116218275 116218344 -26053100 + L1MB4 LINE L1 6112 6180 0 329 114 0 0 chr9 116218446 116218490 -26052954 - Alu SINE Alu -256 44 1 21 0 0 0 chr9 116218500 116218521 -26052923 + AT_rich Low_complexity Low_complexity 1 21 0 211 344 86 0 chr9 116219047 116219140 -26052304 + L2 LINE L2 2608 2708 -606 409 312 65 0 chr9 116219381 116219567 -26051877 + L2 LINE L2 2779 2976 -338 975 173 87 5 chr9 116219612 116219797 -26051647 - MER20 DNA MER1_type -19 200 1 611 318 92 9 chr9 116219797 116220112 -26051332 + L2 LINE L2 2973 3313 0 455 289 64 94 chr9 116220320 116220803 -26050641 - L2 LINE L2 -39 3233 2771 2042 134 42 3 chr9 116220941 116221276 -26050168 - L1MB4 LINE L1 0 6180 5833 1613 133 48 58 chr9 116221278 116221587 -26049857 - MER44D DNA MER2_type -2 607 32 429 153 11 0 chr9 116221598 116221690 -26049754 - L1MB4 LINE L1 -344 5836 5742 618 179 56 49 chr9 116222475 116222637 -26048807 + MER112 DNA MER1_type 91 253 -7 265 205 141 0 chr9 116222671 116222749 -26048695 - MIR SINE MIR -66 142 54 25 51 0 0 chr9 116222966 116223005 -26048439 + AT_rich Low_complexity Low_complexity 1 39 0 1581 173 4 0 chr9 116223005 116223253 -26048191 - AluJo SINE Alu -30 282 34 184 274 20 0 chr9 116223461 116223512 -26047932 + MIR3 SINE MIR 151 202 -6 444 251 45 48 chr9 116224778 116225010 -26046434 - MLT1J LTR MaLR -73 438 230 212 280 140 28 chr9 116225017 116225124 -26046320 - L2 LINE L2 -40 3232 3114 234 0 0 0 chr9 116225409 116225435 -26046009 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 281 300 0 25 chr9 116225782 116225862 -26045582 + MIR SINE MIR 28 105 -103 389 191 53 11 chr9 116225876 116225970 -26045474 + L2 LINE L2 3204 3301 -12 351 271 90 0 chr9 116226554 116226676 -26044768 - MIR SINE MIR -1 261 129 287 339 39 8 chr9 116226696 116226823 -26044621 + MIR SINE MIR 21 151 -111 2104 131 6 6 chr9 116227407 116227719 -26043725 - AluJb SINE Alu 0 312 1 282 56 0 0 chr9 116228248 116228284 -26043160 + (CAG)n Simple_repeat Simple_repeat 1 36 0 265 333 105 18 chr9 116229753 116229972 -26041472 - L2 LINE L2 -217 3055 2818 535 224 25 117 chr9 116230014 116230059 -26041385 + MER5B DNA MER1_type 1 49 -129 2317 90 0 23 chr9 116230059 116230369 -26041075 - AluSp SINE Alu -10 303 1 535 224 25 117 chr9 116230369 116230519 -26040925 + MER5B DNA MER1_type 49 178 0 276 235 173 0 chr9 116231148 116231229 -26040215 - MLT1G1 LTR MaLR -1 548 454 587 272 129 30 chr9 116231268 116231574 -26039870 - MLT1G1 LTR MaLR -248 347 4 601 148 0 0 chr9 116232802 116232890 -26038554 - AluJ/FLAM SINE Alu -223 89 2 2403 83 3 3 chr9 116232902 116233203 -26038241 - AluSp SINE Alu -11 302 2 2171 264 95 10 chr9 116233418 116234038 -26037406 + MER115 DNA AcHobo 11 683 -10 317 323 57 13 chr9 116234097 116234255 -26037189 - MIR3 SINE MIR -40 168 4 1734 208 112 52 chr9 116234436 116234745 -26036699 - L1MC5 LINE L1 -85 7876 7587 1789 154 27 17 chr9 116234745 116235044 -26036400 - AluJb SINE Alu -6 306 5 1734 208 112 52 chr9 116235044 116235370 -26036074 - L1MC5 LINE L1 -374 7587 7203 341 239 0 0 chr9 116235368 116235460 -26035984 - L1 LINE L1 -1822 4324 4233 * 1271 222 47 58 chr9 116235501 116235940 -26035504 - MER39 LTR ERV1 -2 705 67 286 160 20 0 chr9 116235931 116235981 -26035463 - MER34 LTR ERV1 -491 51 1 * 781 146 190 0 chr9 116236192 116236329 -26035115 - MER21B LTR ERV1 -375 488 326 1371 195 4 0 chr9 116236329 116236585 -26034859 - L1 LINE L1 -1902 4244 3988 399 41 0 0 chr9 116236616 116236665 -26034779 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1836 146 27 7 chr9 116236711 116237006 -26034438 - AluJb SINE Alu -10 302 2 1441 155 46 56 chr9 116237014 116237318 -26034126 - AluJo SINE Alu 0 312 12 3235 201 60 71 chr9 116237334 116237375 -26034069 - L1 LINE L1 -2161 3985 3945 189 0 0 0 chr9 116237375 116237396 -26034048 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 3235 201 60 71 chr9 116237396 116237466 -26033978 - L1 LINE L1 -2201 3945 3876 2360 104 0 3 chr9 116237466 116237774 -26033670 - AluSc SINE Alu -2 307 1 3235 201 60 71 chr9 116237774 116238063 -26033381 - L1 LINE L1 -2270 3876 3585 1940 133 24 3 chr9 116238063 116238356 -26033088 - AluSq SINE Alu -14 299 1 3235 201 60 71 chr9 116238356 116238497 -26032947 - L1 LINE L1 -2561 3585 3444 1903 165 13 3 chr9 116238497 116238806 -26032638 - AluJb SINE Alu 0 312 1 3235 201 60 71 chr9 116238806 116238924 -26032520 - L1 LINE L1 -2702 3444 3326 2439 98 0 0 chr9 116238924 116239231 -26032213 - AluSq SINE Alu -6 307 1 3235 201 60 71 chr9 116239231 116239750 -26031694 - L1 LINE L1 -2820 3326 2816 1999 246 101 49 chr9 116239718 116240412 -26031032 - L1M4b LINE L1 -6126 733 4 * 27678 40 0 1 chr9 116240451 116244566 -26026878 - L1PA7 LINE L1 0 6154 2042 26672 40 42 3 chr9 116244681 116248039 -26023405 - L1P LINE L1 -2181 3965 476 13184 51 78 4 chr9 116248139 116249844 -26021600 - L1PA7 LINE L1 -4314 1832 2 2316 104 0 3 chr9 116249915 116250222 -26021222 - AluSx SINE Alu -6 306 1 643 263 62 0 chr9 116250755 116250934 -26020510 - MER91B DNA MER1_type 0 190 1 2456 77 3 3 chr9 116251438 116251751 -26019693 - AluSp SINE Alu 0 313 1 1974 147 0 0 chr9 116251931 116252230 -26019214 - AluSx SINE Alu -11 301 3 224 330 138 0 chr9 116252865 116252974 -26018470 + L2 LINE L2 3145 3268 -4 2411 94 0 3 chr9 116253233 116253540 -26017904 + AluY SINE Alu 1 306 -5 309 89 0 0 chr9 116253570 116253615 -26017829 + (TA)n Simple_repeat Simple_repeat 2 46 0 288 154 0 0 chr9 116253872 116253924 -26017520 - L2 LINE L2 0 3313 3262 555 337 117 35 chr9 116253939 116254102 -26017342 + L2 LINE L2 2458 2606 -666 1952 152 0 26 chr9 116254102 116254411 -26017033 - AluJb SINE Alu -11 301 1 555 337 117 35 chr9 116254411 116255001 -26016443 + L2 LINE L2 2606 3272 0 252 379 90 10 chr9 116255298 116255586 -26015858 - L2 LINE L2 -537 2777 2467 2338 98 0 13 chr9 116255982 116256298 -26015146 - AluSx SINE Alu 0 312 1 2274 93 6 13 chr9 116256313 116256624 -26014820 - AluY SINE Alu -2 309 1 256 321 45 0 chr9 116256643 116256755 -26014689 - L2 LINE L2 -37 3235 3119 2549 69 0 3 chr9 116257150 116257455 -26013989 + AluSg SINE Alu 1 304 -6 2321 245 34 42 chr9 116257978 116258237 -26013207 - L1MEc LINE L1 -4541 1855 1595 600 167 0 19 chr9 116258237 116258345 -26013099 - AluJo/FRAM SINE Alu 0 312 207 1657 174 19 38 chr9 116258239 116258555 -26012889 - AluJo SINE Alu -2 310 1 2321 245 34 42 chr9 116258555 116259149 -26012295 - L1MEc LINE L1 -5011 1385 1007 504 78 72 7 chr9 116259149 116259302 -26012142 + (TA)n Simple_repeat Simple_repeat 2 164 0 309 276 88 22 chr9 116259303 116259484 -26011960 - L1ME4a LINE L1 -161 5960 5768 390 242 42 0 chr9 116259484 116259819 -26011625 + (TTATA)n Simple_repeat Simple_repeat 1 349 0 1495 167 112 0 chr9 116259856 116260125 -26011319 - AluJo SINE Alu -12 300 2 3290 189 49 71 chr9 116260135 116260341 -26011103 - L1MEc LINE L1 -5499 897 688 2065 111 11 0 chr9 116260341 116260612 -26010832 + AluSx SINE Alu 1 274 -38 261 0 0 0 chr9 116260621 116260650 -26010794 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3290 189 49 71 chr9 116260650 116261347 -26010097 - L1MEc LINE L1 -5716 680 4 1140 300 167 65 chr9 116262004 116262812 -26008632 + L2 LINE L2 1890 2875 -397 2152 105 17 0 chr9 116262812 116263108 -26008336 - AluSq SINE Alu -12 301 1 1140 300 167 65 chr9 116263108 116263542 -26007902 + L2 LINE L2 2875 3264 -8 266 253 13 0 chr9 116264021 116264096 -26007348 + L1 LINE L1 3698 3773 -2373 964 92 0 0 chr9 116264109 116264229 -26007215 - AluSq/x SINE Alu -193 120 1 563 200 0 0 chr9 116264305 116264405 -26007039 - MER58 DNA MER1_type -2320 100 1 412 198 132 8 chr9 116264425 116264546 -26006898 - L1 LINE L1 -2313 3833 3698 814 305 137 60 chr9 116264709 116264759 -26006685 - L1M4 LINE L1 -2308 3838 3793 2097 158 3 0 chr9 116264759 116265063 -26006381 - AluSx SINE Alu -7 305 1 814 305 137 60 chr9 116265063 116265486 -26005958 - L1M4 LINE L1 -2353 3793 3404 2028 125 46 0 chr9 116265486 116265767 -26005677 + AluSx SINE Alu 7 300 -12 2344 83 7 7 chr9 116265769 116266069 -26005375 + AluSq SINE Alu 1 300 -13 814 305 137 60 chr9 116266069 116266251 -26005193 - L1M4 LINE L1 -2742 3404 3238 2408 74 3 7 chr9 116266251 116266547 -26004897 + AluY SINE Alu 1 295 -16 814 305 137 60 chr9 116266547 116266775 -26004669 - L1M4 LINE L1 -2908 3238 2881 266 235 29 29 chr9 116266962 116267064 -26004380 + (TATG)n Simple_repeat Simple_repeat 1 102 0 199 137 20 20 chr9 116267073 116267124 -26004320 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 242 288 17 17 chr9 116267132 116267250 -26004194 + (TG)n Simple_repeat Simple_repeat 1 118 0 575 266 29 74 chr9 116268508 116268760 -26002684 + MIR SINE MIR 3 249 -13 427 296 115 13 chr9 116271300 116271451 -25999993 - L1ME4a LINE L1 0 6121 5938 405 39 0 0 chr9 116271451 116271502 -25999942 + (TG)n Simple_repeat Simple_repeat 2 52 0 427 296 115 13 chr9 116271502 116271576 -25999868 - L1ME4a LINE L1 -183 5938 5873 313 294 125 38 chr9 116271805 116271989 -25999455 - HAL1 LINE L1 -1478 1029 830 516 312 0 22 chr9 116272005 116272143 -25999301 - MER5A DNA MER1_type 0 189 55 4473 178 21 20 chr9 116272723 116273727 -25997717 - L1MB8 LINE L1 0 6178 5176 1707 155 3 68 chr9 116273727 116274037 -25997407 - AluJo SINE Alu -22 290 1 4473 178 21 20 chr9 116274037 116274573 -25996871 - L1MB8 LINE L1 -1002 5176 4642 21 36 0 0 chr9 116274575 116274603 -25996841 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr9 116275054 116275076 -25996368 + (T)n Simple_repeat Simple_repeat 1 22 0 344 277 46 23 chr9 116275543 116275673 -25995771 - L1ME3A LINE L1 -14 6156 6024 1743 233 65 42 chr9 116275693 116275912 -25995532 - L1MB8 LINE L1 -3195 2951 2739 1908 135 4 0 chr9 116275912 116276186 -25995258 - AluSx SINE Alu -1 311 37 1743 233 65 42 chr9 116276186 116276662 -25994782 - L1MB8 LINE L1 -3407 2739 2240 1940 170 0 0 chr9 116276705 116276999 -25994445 + AluJb SINE Alu 12 305 -7 321 212 25 0 chr9 116277595 116277713 -25993731 + CT-rich Low_complexity Low_complexity 4 124 0 1112 225 0 9 chr9 116277715 116277937 -25993507 - MLT1F1 LTR MaLR -170 397 178 4455 158 27 25 chr9 116277942 116278775 -25992669 + L1MB7 LINE L1 5294 6131 -53 2071 117 28 7 chr9 116278775 116279065 -25992379 + AluSx SINE Alu 1 296 -16 4455 158 27 25 chr9 116279065 116279111 -25992333 + L1MB7 LINE L1 6131 6175 -9 914 218 11 0 chr9 116279115 116279294 -25992150 - MLT1F1 LTR MaLR -381 186 6 740 249 74 66 chr9 116279300 116279398 -25992046 + MIR SINE MIR 4 100 -162 2049 144 0 13 chr9 116279398 116279697 -25991747 - AluJo SINE Alu -17 295 1 740 249 74 66 chr9 116279697 116279855 -25991589 + MIR SINE MIR 100 262 0 1953 150 0 14 chr9 116281422 116281716 -25989728 - AluJo SINE Alu -18 294 5 944 180 11 44 chr9 116281930 116282113 -25989331 - AluJb SINE Alu -2 310 134 315 265 136 34 chr9 116282250 116282397 -25989047 + MIR3 SINE MIR 5 166 -42 210 250 130 46 chr9 116282644 116282752 -25988692 + L2 LINE L2 3063 3179 -93 475 314 15 29 chr9 116283669 116283873 -25987571 + L3 LINE CR1 1308 1508 -69 205 165 35 35 chr9 116284227 116284312 -25987132 + CT-rich Low_complexity Low_complexity 3 87 0 1867 156 0 11 chr9 116284540 116284846 -25986598 + AluJo SINE Alu 5 307 0 513 289 138 13 chr9 116284892 116285190 -25986254 - L1MC4a LINE L1 -1980 5828 5494 404 291 38 19 chr9 116285231 116285389 -25986055 + L3 LINE CR1 1414 1574 -3 236 312 0 0 chr9 116285851 116285928 -25985516 + CT-rich Low_complexity Low_complexity 2 78 0 772 302 103 0 chr9 116285938 116286170 -25985274 + MIR SINE MIR 2 257 -5 2294 111 0 7 chr9 116286186 116286493 -25984951 + AluSg SINE Alu 1 305 -5 183 214 214 0 chr9 116286494 116286550 -25984894 - L2 LINE L2 -3 3310 3243 405 308 58 43 chr9 116286587 116286795 -25984649 - L2 LINE L2 -212 3060 2850 327 264 126 24 chr9 116286900 116287067 -25984377 + L2 LINE L2 2791 2974 -340 224 312 88 71 chr9 116287185 116287355 -25984089 + L2 LINE L2 3030 3202 -70 2402 92 3 0 chr9 116287775 116288080 -25983364 + AluSp SINE Alu 1 306 -7 618 343 28 16 chr9 116288260 116288514 -25982930 - MIR SINE MIR -5 257 1 461 246 46 74 chr9 116288617 116288792 -25982652 + MIR3 SINE MIR 23 192 -16 234 81 0 0 chr9 116290338 116290375 -25981069 + (A)n Simple_repeat Simple_repeat 1 37 0 452 215 32 0 chr9 116290640 116290733 -25980711 + MIR SINE MIR 105 200 -62 240 208 129 59 chr9 116290892 116290993 -25980451 - L1ME4a LINE L1 -47 6074 5967 285 185 0 0 chr9 116291026 116291091 -25980353 + (TG)n Simple_repeat Simple_repeat 2 66 0 2453 68 0 7 chr9 116291105 116291399 -25980045 - AluY SINE Alu -19 292 1 261 254 0 17 chr9 116291891 116291950 -25979494 - L2 LINE L2 -10 3262 3205 270 324 157 0 chr9 116292061 116292169 -25979275 + L2 LINE L2 3147 3271 -1 314 301 37 31 chr9 116292203 116292366 -25979078 - L2 LINE L2 -190 3082 2919 826 204 88 42 chr9 116293215 116293500 -25977944 - L1MC5 LINE L1 -54 7907 7610 309 314 91 33 chr9 116293622 116293832 -25977612 - L1MCa LINE L1 -4226 2200 1979 320 247 32 32 chr9 116293862 116293955 -25977489 - L1MCa LINE L1 -4354 2072 1980 302 292 116 47 chr9 116293977 116294210 -25977234 - L1ME4a LINE L1 -111 6010 5762 1841 119 86 7 chr9 116294277 116294555 -25976889 - AluSq SINE Alu -11 302 3 2300 107 3 0 chr9 116294569 116294860 -25976584 - AluSx SINE Alu -20 292 1 198 284 0 54 chr9 116294890 116294964 -25976480 - MIR SINE MIR -11 251 182 278 333 26 0 chr9 116295237 116295315 -25976129 + L2 LINE L2 2893 2972 -341 248 363 38 31 chr9 116296703 116296865 -25974579 + MER5A DNA MER1_type 17 189 0 211 219 24 0 chr9 116296911 116296952 -25974492 - L3 LINE CR1 -136 1441 1400 323 246 123 8 chr9 116297227 116297357 -25974087 - L1ME4a LINE L1 0 6121 5977 1422 154 57 0 chr9 116297557 116297784 -25973660 - AluJb SINE Alu -72 240 1 2213 125 3 3 chr9 116297873 116298185 -25973259 - AluSx SINE Alu 0 312 1 371 258 46 73 chr9 116298556 116298707 -25972737 + MIR SINE MIR 76 222 -40 2487 81 0 0 chr9 116299564 116299861 -25971583 - AluSx SINE Alu -15 297 1 243 303 90 39 chr9 116299985 116300201 -25971243 - L2 LINE L2 -5 3308 3005 2326 106 0 16 chr9 116301643 116301954 -25969490 + AluSx SINE Alu 1 306 -6 2300 132 0 0 chr9 116301955 116302265 -25969179 + AluSx SINE Alu 1 310 -2 239 306 75 45 chr9 116302307 116302441 -25969003 - MIR SINE MIR -71 191 54 317 212 131 0 chr9 116302613 116302712 -25968732 - L2 LINE L2 0 3313 3202 578 234 65 0 chr9 116302714 116302868 -25968576 + MER3 DNA MER1_type 41 204 -5 331 289 91 0 chr9 116303243 116303364 -25968080 - MIR3 SINE MIR -29 179 48 436 259 105 49 chr9 116303473 116303635 -25967809 + MIR3 SINE MIR 30 200 -8 2264 123 0 7 chr9 116303696 116303998 -25967446 - AluSx SINE Alu -12 300 1 200 127 18 55 chr9 116305610 116305665 -25965779 + MIR3 SINE MIR 2 54 -154 450 310 65 48 chr9 116305797 116306026 -25965418 + MIR SINE MIR 18 250 -12 220 200 0 0 chr9 116306956 116306996 -25964448 + CT-rich Low_complexity Low_complexity 3 42 0 182 250 0 0 chr9 116307714 116307754 -25963690 + L2 LINE L2 3219 3258 -14 253 291 70 0 chr9 116309279 116309365 -25962079 - MIR3 SINE MIR -31 177 86 640 294 44 0 chr9 116310843 116311071 -25960373 + L3 LINE CR1 1259 1496 -81 365 274 34 14 chr9 116311118 116311264 -25960180 - MER103 DNA DNA -1 165 17 222 368 11 0 chr9 116311345 116311432 -25960012 + L3 LINE CR1 1489 1576 -1 459 183 23 99 chr9 116312027 116312062 -25959382 + MIR SINE MIR 77 113 -149 2235 102 3 10 chr9 116312062 116312357 -25959087 + AluSc SINE Alu 1 293 -16 459 183 23 99 chr9 116312357 116312452 -25958992 + MIR SINE MIR 113 197 -65 2217 121 11 6 chr9 116313002 116313357 -25958087 - L1PB1 LINE L1 -1 6150 5794 268 309 36 18 chr9 116313426 116313536 -25957908 + L2 LINE L2 3159 3270 -2 273 290 97 11 chr9 116314561 116314654 -25956790 + MIR SINE MIR 49 149 -113 244 321 12 0 chr9 116315136 116315220 -25956224 - MIR SINE MIR -97 165 81 2414 97 6 0 chr9 116315973 116316284 -25955160 + AluSp SINE Alu 1 313 0 725 266 61 26 chr9 116316584 116316813 -25954631 - MIR SINE MIR -6 256 20 468 242 31 8 chr9 116317052 116317180 -25954264 - Charlie8 DNA MER1_type -2161 256 126 298 351 47 27 chr9 116317287 116317435 -25954009 + L2 LINE L2 3122 3272 0 643 167 0 0 chr9 116318243 116318345 -25953099 + FRAM SINE Alu 20 121 -55 2313 96 10 16 chr9 116318407 116318721 -25952723 + AluSx SINE Alu 1 312 0 886 294 68 6 chr9 116319004 116319341 -25952103 - L1ME4a LINE L1 -236 5885 5528 2487 93 0 3 chr9 116319578 116319890 -25951554 - AluSq SINE Alu -2 311 1 828 167 0 0 chr9 116319946 116320072 -25951372 - FRAM SINE Alu -30 146 21 206 314 153 8 chr9 116321574 116321692 -25949752 + MIR3 SINE MIR 2 136 -72 480 262 41 116 chr9 116321815 116322177 -25949267 - MARNA DNA Mariner -39 547 213 429 318 50 11 chr9 116322270 116322449 -25948995 - MIR SINE MIR -17 245 60 189 0 0 0 chr9 116322747 116322768 -25948676 + (A)n Simple_repeat Simple_repeat 1 21 0 246 333 157 20 chr9 116322782 116322980 -25948464 - L3 LINE CR1 0 1577 1353 244 233 33 0 chr9 116323142 116323202 -25948242 - L2 LINE L2 -45 3227 3166 212 296 62 25 chr9 116323198 116323279 -25948165 - L3 LINE CR1 -622 955 872 * 198 0 0 0 chr9 116323781 116323803 -25947641 + (T)n Simple_repeat Simple_repeat 1 22 0 236 29 0 29 chr9 116324053 116324087 -25947357 + (TTA)n Simple_repeat Simple_repeat 2 34 0 344 204 14 0 chr9 116324215 116324299 -25947145 + MIR SINE MIR 77 147 -61 462 275 88 20 chr9 116324724 116325019 -25946425 - L1MC4a LINE L1 -1878 5930 5616 305 261 65 42 chr9 116325598 116325743 -25945701 - MIR3 SINE MIR -76 132 8 652 255 93 9 chr9 116326529 116326745 -25944699 + MIR SINE MIR 23 256 -6 276 286 0 0 chr9 116329017 116329087 -25942357 + L2 LINE L2 3203 3272 0 506 291 14 7 chr9 116329676 116329824 -25941620 + MIR SINE MIR 3 151 -111 564 266 121 24 chr9 116331199 116331406 -25940038 + MIR SINE MIR 9 235 -27 670 198 175 46 chr9 116334588 116334805 -25936639 + MIR SINE MIR 18 262 0 371 204 28 93 chr9 116335018 116335126 -25936318 + MIR SINE MIR 89 189 -73 205 302 42 31 chr9 116335895 116335991 -25935453 + MIR SINE MIR 132 228 -34 226 322 22 22 chr9 116336347 116336437 -25935007 + MIR SINE MIR 64 153 -109 2297 123 0 0 chr9 116336499 116336801 -25934643 - AluSx SINE Alu -10 302 1 223 316 0 0 chr9 116336878 116336954 -25934490 - MIR SINE MIR -73 135 60 504 280 169 52 chr9 116337447 116337626 -25933818 + L2 LINE L2 2927 3084 -229 1738 168 27 9 chr9 116337626 116337882 -25933562 + MER2 DNA MER2_type 1 266 -78 1908 154 7 16 chr9 116337882 116338187 -25933257 - AluJo SINE Alu -10 302 1 1738 168 27 9 chr9 116338187 116338264 -25933180 + MER2 DNA MER2_type 266 340 -4 504 280 169 52 chr9 116338264 116338419 -25933025 + L2 LINE L2 3084 3304 -9 2082 118 3 50 chr9 116338419 116338742 -25932702 - AluSg SINE Alu -2 308 1 280 246 227 0 chr9 116338850 116338960 -25932484 - MIR SINE MIR -98 164 30 699 256 28 6 chr9 116341310 116341490 -25929954 + MIR SINE MIR 65 248 -14 1680 114 0 4 chr9 116342603 116342831 -25928613 - AluSx SINE Alu -22 290 64 272 306 57 40 chr9 116343602 116343726 -25927718 - L2 LINE L2 -6 3307 3182 251 239 141 0 chr9 116344014 116344085 -25927359 - L2 LINE L2 -95 3177 3097 * 298 229 167 21 chr9 116344083 116344179 -25927265 + MIR SINE MIR 79 188 -74 779 290 150 26 chr9 116345152 116345820 -25925624 - L2 LINE L2 -2 3311 2560 355 290 10 10 chr9 116347980 116348080 -25923364 - MIR SINE MIR -117 145 46 762 245 20 75 chr9 116349016 116349269 -25922175 - MIR SINE MIR -19 243 5 487 245 20 66 chr9 116349791 116349942 -25921502 - MIR3 SINE MIR -49 159 16 435 318 13 19 chr9 116350134 116350288 -25921156 + MIR3 SINE MIR 18 170 -38 534 101 0 0 chr9 116350843 116350922 -25920522 - MADE1 DNA Mariner -1 79 1 306 298 219 11 chr9 116352458 116352636 -25918808 + MIR SINE MIR 32 246 -16 186 71 0 0 chr9 116352731 116352759 -25918685 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 896 234 73 56 chr9 116352773 116353200 -25918244 - L1ME4a LINE L1 0 6121 5688 571 147 128 0 chr9 116353200 116353309 -25918135 + FRAM SINE Alu 39 161 -15 206 322 0 0 chr9 116353328 116353387 -25918057 + L2 LINE L2 3243 3301 -12 2096 127 7 7 chr9 116353387 116353687 -25917757 + AluSx SINE Alu 5 304 -8 404 223 23 31 chr9 116353702 116353832 -25917612 - L1ME4a LINE L1 -456 5665 5537 427 267 0 30 chr9 116353837 116353938 -25917506 - MER81 DNA DNA -5 109 12 405 303 80 29 chr9 116353978 116354250 -25917194 - L1ME4a LINE L1 -744 5402 5145 3737 160 20 28 chr9 116354250 116354870 -25916574 - L1MB8 LINE L1 0 6178 5564 1905 154 34 0 chr9 116354870 116354988 -25916456 + AluSx SINE Alu 2 115 -197 180 0 0 0 chr9 116354988 116355008 -25916436 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1905 154 34 0 chr9 116355008 116355187 -25916257 + AluSx SINE Alu 115 309 -3 3737 160 20 28 chr9 116355187 116355346 -25916098 - L1MB8 LINE L1 -614 5564 5405 405 303 80 29 chr9 116355346 116355537 -25915907 - L1ME4a LINE L1 -1001 5145 4918 2062 60 0 8 chr9 116355613 116355885 -25915559 - AluY SINE Alu 0 305 36 270 326 50 18 chr9 116355961 116356243 -25915201 - L1ME4a LINE L1 -1522 4624 4334 2056 147 0 3 chr9 116356462 116356762 -25914682 + AluJb SINE Alu 1 299 -13 449 49 49 0 chr9 116356762 116356843 -25914601 + (TA)n Simple_repeat Simple_repeat 1 85 0 2313 100 0 3 chr9 116356862 116357163 -25914281 + AluSq SINE Alu 1 300 -13 320 247 79 22 chr9 116357210 116357299 -25914145 - L1ME LINE L1 -336 5785 5692 225 235 167 10 chr9 116357344 116357446 -25913998 - MIR SINE MIR -44 218 101 518 286 83 35 chr9 116357448 116357612 -25913832 - L1ME LINE L1 -2250 5558 5373 2233 117 3 3 chr9 116357612 116357910 -25913534 - AluSx SINE Alu -14 298 1 518 286 83 35 chr9 116357910 116358035 -25913409 - L1ME LINE L1 -2435 5373 5255 517 370 82 24 chr9 116358057 116358508 -25912936 - L1ME LINE L1 -935 5211 4735 2309 93 3 0 chr9 116358776 116359066 -25912378 - AluSg SINE Alu -17 293 3 552 305 93 45 chr9 116359183 116359698 -25911746 - HAL1 LINE L1 -738 1769 1230 189 0 0 0 chr9 116359700 116359721 -25911723 + (TAA)n Simple_repeat Simple_repeat 2 22 0 653 263 20 0 chr9 116359778 116359930 -25911514 - MIR SINE MIR -105 157 3 200 274 96 0 chr9 116360070 116360143 -25911301 - MIR SINE MIR -71 137 58 225 242 32 32 chr9 116360353 116360415 -25911029 - L2 LINE L2 -12 3260 3199 428 285 145 11 chr9 116360416 116360602 -25910842 - MLT1K LTR MaLR 0 588 378 636 276 41 27 chr9 116360663 116360884 -25910560 - MLT1K LTR MaLR -305 283 60 353 319 140 40 chr9 116361074 116361524 -25909920 - L2 LINE L2 -375 2939 2423 2306 84 3 3 chr9 116361524 116361821 -25909623 + AluSq SINE Alu 1 297 -16 353 319 140 40 chr9 116361821 116361919 -25909525 - L2 LINE L2 -891 2423 2336 312 325 97 9 chr9 116362122 116362236 -25909208 - MER5C DNA MER1_type -200 124 1 251 243 0 43 chr9 116362236 116362306 -25909138 - MIR3 SINE MIR -48 160 94 2054 121 0 3 chr9 116362528 116362825 -25908619 + AluSx SINE Alu 6 301 -11 218 242 30 0 chr9 116363680 116363746 -25907698 - L2 LINE L2 -323 2990 2923 259 286 0 127 chr9 116363925 116364114 -25907330 + G-rich Low_complexity Low_complexity 4 168 0 1924 132 24 0 chr9 116364341 116364629 -25906815 - AluSp SINE Alu -18 295 1 221 122 49 0 chr9 116367266 116367307 -25904137 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 717 151 0 0 chr9 116367345 116367451 -25903993 + FLAM_C SINE Alu 1 106 -37 324 154 31 0 chr9 116367521 116367586 -25903858 - Alu SINE Alu 0 302 236 1936 77 49 45 chr9 116367586 116367873 -25903571 - AluSx SINE Alu -24 288 1 243 281 141 25 chr9 116367958 116368079 -25903365 + L2 LINE L2 3138 3272 0 335 247 101 0 chr9 116368088 116368177 -25903267 + MIR SINE MIR 107 204 -58 318 308 96 0 chr9 116368172 116368276 -25903168 - L2 LINE L2 0 3272 3159 * 214 150 25 0 chr9 116368536 116368576 -25902868 + MIR SINE MIR 105 145 -63 195 42 0 0 chr9 116370146 116370170 -25901274 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 369 0 0 0 chr9 116370169 116370210 -25901234 + (TC)n Simple_repeat Simple_repeat 1 41 0 417 152 68 54 chr9 116370215 116370401 -25901043 - MER21A LTR ERV1 -27 904 677 644 130 22 0 chr9 116370402 116370523 -25900921 + AluSg/x SINE Alu 189 311 0 1822 169 48 35 chr9 116370523 116370895 -25900549 - MER21A LTR ERV1 -244 687 311 1163 124 48 172 chr9 116371055 116371410 -25900034 - MER21A LTR ERV1 -620 311 1 2152 90 3 35 chr9 116371737 116372048 -25899396 + AluSg SINE Alu 1 301 -9 1935 132 24 0 chr9 116372062 116372349 -25899095 + AluJb SINE Alu 4 297 -15 1115 164 0 19 chr9 116372418 116372625 -25898819 - AluSq SINE Alu -11 302 100 304 234 135 27 chr9 116373024 116373135 -25898309 - MIR SINE MIR -63 145 23 823 120 0 70 chr9 116373568 116373710 -25897734 + AluJo/FLAM SINE Alu 1 132 -180 2279 116 0 0 chr9 116373710 116374020 -25897424 + AluSg SINE Alu 1 310 0 1987 111 0 21 chr9 116374025 116374313 -25897131 + AluSq SINE Alu 1 282 -31 2241 86 3 0 chr9 116374313 116374604 -25896840 + AluSq SINE Alu 6 297 -16 26 116 0 0 chr9 116375278 116375416 -25896028 + GC_rich Low_complexity Low_complexity 1 138 0 217 167 24 0 chr9 116376005 116376047 -25895397 + (CA)n Simple_repeat Simple_repeat 1 43 0 207 318 15 0 chr9 116376355 116376421 -25895023 + MIR3 SINE MIR 118 184 -24 238 298 85 76 chr9 116377162 116377491 -25893953 - L2 LINE L2 -96 3176 2845 1051 290 95 34 chr9 116377509 116378047 -25893397 - MLT1E LTR MaLR -17 576 6 1973 119 0 14 chr9 116378096 116378414 -25893030 + AluSx SINE Alu 1 314 0 266 257 54 0 chr9 116378496 116378570 -25892874 - MIR3 SINE MIR -54 154 77 306 292 0 22 chr9 116378616 116378705 -25892739 - MLT1B LTR MaLR -59 331 245 356 368 7 21 chr9 116378745 116378889 -25892555 - MIR SINE MIR -54 208 67 1615 214 97 23 chr9 116379378 116379809 -25891635 - MLT1C LTR MaLR -4 463 1 1485 128 72 11 chr9 116380760 116381113 -25890331 - AluJb SINE Alu 0 370 2 223 329 14 0 chr9 116381333 116381406 -25890038 + MIR3 SINE MIR 3 76 -132 347 283 113 0 chr9 116381538 116381644 -25889800 - MIR SINE MIR -78 184 67 297 269 92 8 chr9 116382677 116382796 -25888648 + MIR3 SINE MIR 9 137 -71 226 315 45 0 chr9 116382984 116383073 -25888371 + MIR SINE MIR 29 121 -141 374 279 91 1 chr9 116383436 116383568 -25887876 + MIR SINE MIR 34 174 -58 207 0 0 0 chr9 116384448 116384471 -25886973 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 202 326 20 31 chr9 116384881 116384979 -25886465 - MIR3 SINE MIR -29 179 83 356 156 16 0 chr9 116385639 116385714 -25885730 + AluS SINE Alu 1 62 -246 431 188 0 47 chr9 116385814 116385899 -25885545 - AluSc SINE Alu -114 195 115 240 266 0 0 chr9 116386087 116386196 -25885248 + (TG)n Simple_repeat Simple_repeat 1 109 0 221 317 158 0 chr9 116386201 116386283 -25885161 - MIR SINE MIR -79 183 89 670 152 45 45 chr9 116387144 116387276 -25884168 - FLAM_C SINE Alu -1 132 1 200 285 0 59 chr9 116390612 116390798 -25880646 + C-rich Low_complexity Low_complexity 5 179 0 * 342 235 72 12 chr9 116390690 116390856 -25880588 + (CCCTAA)n Simple_repeat Simple_repeat 3 178 0 209 111 44 0 chr9 116391107 116391152 -25880292 + G-rich Low_complexity Low_complexity 1 47 0 321 293 64 14 chr9 116394630 116394770 -25876674 + LTR16C LTR ERVL 241 387 -104 * 547 144 29 0 chr9 116394767 116394871 -25876573 + MLT1C LTR MaLR 361 467 0 4303 290 69 29 chr9 116394879 116395673 -25875771 + L1MD2 LINE L1 2130 2891 -3255 2105 119 10 0 chr9 116395673 116395966 -25875478 + AluSx SINE Alu 1 296 -16 1672 174 45 0 chr9 116395968 116396089 -25875355 + AluSx SINE Alu 1 115 -197 186 71 0 0 chr9 116396089 116396117 -25875327 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1672 174 45 0 chr9 116396117 116396283 -25875161 + AluSx SINE Alu 115 301 -11 4303 290 69 29 chr9 116396283 116397301 -25874143 + L1MD2 LINE L1 2891 4075 -2071 3847 90 29 11 chr9 116397301 116397847 -25873597 - LTR38 LTR ERV1 0 556 1 4303 290 69 29 chr9 116397847 116398528 -25872916 + L1MD2 LINE L1 4075 4727 -1419 1176 158 0 0 chr9 116398533 116398710 -25872734 - AluSg/x SINE Alu -1 311 135 2125 219 98 23 chr9 116398741 116399879 -25871565 + L1MD2 LINE L1 4777 5990 -369 464 220 20 0 chr9 116399880 116399980 -25871464 + L1MD2 LINE L1 6256 6357 -2 308 297 36 43 chr9 116400178 116400316 -25871128 - L2 LINE L2 -19 3294 3158 375 285 15 8 chr9 116400320 116400450 -25870994 + LTR41 LTR ERVL 2 132 -641 776 326 78 7 chr9 116401016 116401538 -25869906 - L2 LINE L2 -155 3158 2606 312 296 74 28 chr9 116401645 116401969 -25869475 + L1MEc LINE L1 136 474 -5922 4034 182 41 13 chr9 116402059 116403319 -25868125 + L1MB7 LINE L1 4891 6184 0 320 206 16 0 chr9 116403477 116403540 -25867904 + MLT1D LTR MaLR 4 67 -438 374 167 15 0 chr9 116403543 116403609 -25867835 + MLT1D LTR MaLR 1 67 -438 358 136 17 0 chr9 116403612 116403671 -25867773 + MLT1D LTR MaLR 1 60 -445 1527 183 41 36 chr9 116403681 116404074 -25867370 + MLT1D LTR MaLR 5 399 -106 2527 201 86 34 chr9 116405173 116405470 -25865974 + MER67B LTR ERV1 1 281 -380 2074 105 17 10 chr9 116405470 116405764 -25865680 + AluSx SINE Alu 1 296 -16 2527 201 86 34 chr9 116405764 116406093 -25865351 + MER67B LTR ERV1 281 660 -1 1287 240 37 42 chr9 116406364 116406798 -25864646 - MER74A LTR ERVL -126 432 1 304 283 48 30 chr9 116406809 116406975 -25864469 - LTR41 LTR ERVL -21 752 584 1810 148 0 11 chr9 116407002 116407285 -25864159 - AluJo SINE Alu -32 280 1 399 289 9 0 chr9 116407301 116407415 -25864029 - L1MC4 LINE L1 -1333 6989 1995 3859 40 0 0 chr9 116407416 116407870 -25863574 - L1PA5 LINE L1 -8 6146 5693 192 200 0 0 chr9 116412270 116412315 -25859129 + (CA)n Simple_repeat Simple_repeat 2 46 0 603 281 117 61 chr9 116412744 116413139 -25858305 + L1MEc LINE L1 771 1187 -5018 532 242 9 0 chr9 116413214 116413430 -25858014 + (CA)n Simple_repeat Simple_repeat 1 218 0 538 272 102 48 chr9 116413430 116413871 -25857573 + HAL1 LINE L1 1183 1647 -860 1970 112 42 0 chr9 116413885 116414172 -25857272 + AluSg SINE Alu 1 299 -11 408 339 75 70 chr9 116414715 116415184 -25856260 + L1MEc LINE L1 2443 2913 -3302 1092 294 115 18 chr9 116415242 116415869 -25855575 + MER69B DNA AcHobo 539 1226 0 24 0 0 0 chr9 116415930 116415954 -25855490 + AT_rich Low_complexity Low_complexity 1 24 0 2374 29 0 4 chr9 116415954 116416231 -25855213 - L1PA5 LINE L1 -6 6148 5873 2173 47 0 0 chr9 116416231 116416507 -25854937 + L1PA5 LINE L1 5604 5879 -275 206 79 0 26 chr9 116420533 116420571 -25850873 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 308 324 48 0 chr9 116420861 116420966 -25850478 + L1ME4a LINE L1 5804 5913 -208 814 149 0 8 chr9 116421065 116421199 -25850245 - AluJo SINE Alu -178 134 2 275 301 37 25 chr9 116421570 116421733 -25849711 + (CGGGG)n Simple_repeat Simple_repeat 5 169 0 234 83 0 28 chr9 116422390 116422426 -25849018 + Alu SINE Alu 28 62 -241 2014 131 0 3 chr9 116422526 116422817 -25848627 - AluSx SINE Alu -22 290 1 222 171 0 0 chr9 116422819 116422860 -25848584 + T-rich Low_complexity Low_complexity 3 43 0 1527 169 10 40 chr9 116422862 116422889 -25848555 - AluJb SINE Alu 0 312 286 180 97 0 0 chr9 116422889 116422920 -25848524 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 1527 169 10 40 chr9 116422920 116423193 -25848251 - AluJb SINE Alu -26 286 21 388 179 140 107 chr9 116423585 116423687 -25847757 + MIR SINE MIR 50 147 -115 2123 121 3 3 chr9 116423687 116423992 -25847452 + AluSx SINE Alu 1 305 -7 388 179 140 107 chr9 116423992 116424095 -25847349 + MIR SINE MIR 147 258 -4 533 233 107 7 chr9 116424263 116424413 -25847031 + MIR3 SINE MIR 23 187 -21 569 237 22 0 chr9 116424747 116424882 -25846562 + L2 LINE L2 3134 3271 -1 706 313 12 12 chr9 116425644 116425890 -25845554 + MIR SINE MIR 9 254 -8 510 295 11 29 chr9 116425899 116426083 -25845361 - MIR SINE MIR -62 146 16 348 94 0 0 chr9 116426875 116426928 -25844516 + (GGA)n Simple_repeat Simple_repeat 1 53 0 381 70 0 0 chr9 116427497 116427554 -25843890 + (TG)n Simple_repeat Simple_repeat 2 58 0 295 317 10 0 chr9 116428113 116428214 -25843230 - MIR SINE MIR -74 134 33 201 220 0 0 chr9 116428787 116428837 -25842607 + L2 LINE L2 2914 2963 -309 261 0 0 0 chr9 116428838 116428867 -25842577 + (TCCCC)n Simple_repeat Simple_repeat 1 29 0 559 78 26 0 chr9 116429629 116429706 -25841738 - MADE1 DNA Mariner 0 80 2 280 250 98 9 chr9 116429713 116429825 -25841619 - MIR SINE MIR -71 137 16 211 355 58 8 chr9 116430017 116430138 -25841306 + MIR3 SINE MIR 78 204 -4 720 35 0 0 chr9 116431188 116431275 -25840169 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 200 383 0 0 chr9 116431417 116431498 -25839946 - L2 LINE L2 -165 3107 3027 2331 264 85 20 chr9 116431891 116432068 -25839376 - L1ME3A LINE L1 -5 6165 6001 2083 78 53 0 chr9 116432068 116432349 -25839095 - AluSx SINE Alu -16 296 1 2331 264 85 20 chr9 116432349 116433420 -25838024 - L1ME3A LINE L1 -169 6001 4831 235 323 11 11 chr9 116433423 116433516 -25837928 - L2 LINE L2 -255 3017 2925 524 262 138 29 chr9 116434486 116434696 -25836748 - MIR SINE MIR -15 247 15 568 300 105 5 chr9 116435370 116435580 -25835864 + MIR SINE MIR 20 250 -12 194 315 0 0 chr9 116435941 116435995 -25835449 + L2 LINE L2 3215 3268 -4 216 315 0 14 chr9 116437058 116437131 -25834313 + MIR SINE MIR 52 123 -85 395 307 16 16 chr9 116437195 116437322 -25834122 - MER5B DNA MER1_type -48 130 4 200 324 235 0 chr9 116437333 116437435 -25834009 - MER5A DNA MER1_type 0 189 64 1865 59 0 0 chr9 116437435 116437680 -25833764 + AluY SINE Alu 61 305 0 1968 122 3 14 chr9 116438552 116438892 -25832552 + AluSq SINE Alu 1 337 0 288 171 73 12 chr9 116439328 116439410 -25832034 - MLT1K LTR MaLR -11 577 491 2037 129 3 0 chr9 116439489 116439784 -25831660 + AluSx SINE Alu 1 296 -16 1350 258 67 61 chr9 116439974 116440401 -25831043 - MLT1H LTR MaLR 0 549 117 2205 117 0 0 chr9 116440401 116440701 -25830743 + AluSx SINE Alu 1 300 -12 1350 258 67 61 chr9 116440701 116440797 -25830647 - MLT1H LTR MaLR -432 117 23 470 308 116 23 chr9 116440989 116441291 -25830153 - MLT1K LTR MaLR -131 457 128 357 266 106 9 chr9 116441951 116442064 -25829380 - L2 LINE L2 0 3313 3190 434 239 77 0 chr9 116442064 116442181 -25829263 + MER103 DNA DNA 39 164 -2 222 253 253 33 chr9 116442202 116442352 -25829092 - MIR3 SINE MIR -3 205 23 662 164 25 28 chr9 116442388 116442895 -25828549 + CT-rich Low_complexity Low_complexity 1 505 0 259 254 9 82 chr9 116443373 116443483 -25827961 - MIR SINE MIR -71 137 36 361 322 20 46 chr9 116443699 116443851 -25827593 - MIR3 SINE MIR -54 154 7 2256 71 3 46 chr9 116443914 116444238 -25827206 + AluY SINE Alu 1 310 -1 21 0 0 0 chr9 116444830 116444851 -25826593 + AT_rich Low_complexity Low_complexity 1 21 0 475 274 75 7 chr9 116445278 116445424 -25826020 - MIR SINE MIR -66 196 41 424 250 16 39 chr9 116445483 116445611 -25825833 + MIR3 SINE MIR 82 206 -2 459 281 54 30 chr9 116445733 116445900 -25825544 - MIR SINE MIR -44 218 48 303 300 100 29 chr9 116445948 116446088 -25825356 + L2 LINE L2 3119 3268 -4 218 130 0 56 chr9 116446613 116446667 -25824777 + (GAAAA)n Simple_repeat Simple_repeat 1 51 0 479 291 25 26 chr9 116447329 116447482 -25823962 - MIR SINE MIR -52 210 60 2343 65 7 0 chr9 116447482 116447776 -25823668 - AluSq SINE Alu -17 296 1 479 291 25 26 chr9 116447776 116447828 -25823616 - MIR SINE MIR -202 60 9 224 347 53 0 chr9 116448148 116448243 -25823201 - L2 LINE L2 -1 3312 3213 560 295 164 44 chr9 116448265 116448722 -25822722 - L2 LINE L2 -354 2960 2449 426 196 59 29 chr9 116448776 116448878 -25822566 - L2 LINE L2 0 3272 3168 824 176 0 13 chr9 116449203 116449356 -25822088 + AluSq SINE Alu 138 288 -25 3399 180 29 41 chr9 116449357 116450058 -25821386 + L1MB8 LINE L1 5478 6169 -9 2574 50 0 3 chr9 116450061 116450379 -25821065 - AluYb8 SINE Alu 0 318 2 296 319 132 17 chr9 116450416 116450704 -25820740 - L2 LINE L2 -453 2861 2541 318 115 103 103 chr9 116450704 116450725 -25820719 - L1MC2 LINE L1 -1 6343 6323 2191 120 0 0 chr9 116450725 116451034 -25820410 - AluSx SINE Alu -3 309 1 318 115 103 103 chr9 116451034 116451099 -25820345 - L1MC2 LINE L1 -20 6324 6257 244 346 79 15 chr9 116451161 116451363 -25820081 - L2 LINE L2 -799 2515 2301 187 321 38 8 chr9 116451360 116451491 -25819953 + L2 LINE L2 2851 2985 -287 * 232 336 50 17 chr9 116452065 116452184 -25819260 + L2 LINE L2 3183 3305 -8 585 241 115 5 chr9 116452437 116452632 -25818812 - MIR SINE MIR -4 258 51 310 282 77 17 chr9 116453075 116453192 -25818252 - MIR SINE MIR -118 144 21 211 191 29 59 chr9 116453338 116453406 -25818038 + MIR SINE MIR 40 105 -157 279 266 0 0 chr9 116453905 116453969 -25817475 + L2 LINE L2 3208 3271 -42 315 245 161 9 chr9 116454466 116454601 -25816843 + MIR SINE MIR 16 167 -63 438 317 43 12 chr9 116454636 116454800 -25816644 - MIR SINE MIR -81 181 13 326 254 0 82 chr9 116455376 116455498 -25815946 + MIR SINE MIR 37 148 -60 223 308 77 0 chr9 116456400 116456478 -25814966 + MIR SINE MIR 79 162 -100 299 336 66 0 chr9 116457237 116457374 -25814070 + MIR SINE MIR 113 258 -4 888 207 117 0 chr9 116458416 116458638 -25812806 - MIR SINE MIR 0 262 15 203 264 0 83 chr9 116458681 116458753 -25812691 - L2 LINE L2 -12 3301 3236 464 309 67 0 chr9 116458835 116458984 -25812460 + MIR SINE MIR 29 187 -75 248 297 51 34 chr9 116459188 116459306 -25812138 - L2 LINE L2 -219 3053 2934 443 299 17 0 chr9 116459306 116459423 -25812021 - MER117 DNA MER1_type -7 190 72 447 215 116 41 chr9 116459578 116459750 -25811694 + MER5A DNA MER1_type 3 187 -2 731 279 5 34 chr9 116460371 116460575 -25810869 + MIR SINE MIR 61 258 -4 196 252 110 47 chr9 116460702 116460829 -25810615 - MIR3 SINE MIR -69 139 5 199 245 19 0 chr9 116461184 116461237 -25810207 + MIR SINE MIR 78 131 -77 262 302 31 0 chr9 116461459 116461555 -25809889 - MIR3 SINE MIR -16 192 94 681 286 60 14 chr9 116462224 116462441 -25809003 + MIR SINE MIR 28 254 -8 866 271 45 0 chr9 116462474 116462695 -25808749 - MIR SINE MIR -27 235 5 278 350 61 6 chr9 116463479 116463642 -25807802 - MIR SINE MIR -3 259 88 385 284 216 0 chr9 116463885 116464047 -25807397 + MIR SINE MIR 55 251 -11 1047 158 3 0 chr9 116464050 116464342 -25807102 + (TCCA)n Simple_repeat Simple_repeat 1 293 0 221 272 31 0 chr9 116464673 116464748 -25806696 - MIR SINE MIR -62 146 80 1806 134 28 14 chr9 116466237 116466527 -25804917 - AluSx SINE Alu -18 294 1 332 305 81 58 chr9 116466581 116466804 -25804640 - MIR SINE MIR 0 262 35 375 236 34 0 chr9 116466851 116466940 -25804504 - MIR SINE MIR -149 113 22 333 283 28 0 chr9 116469103 116469209 -25802235 - MIR SINE MIR -62 146 38 238 123 62 62 chr9 116469715 116469780 -25801664 - MIR SINE MIR -34 228 164 2013 86 4 0 chr9 116469792 116470059 -25801385 + AluSx SINE Alu 1 268 -44 734 298 46 13 chr9 116470066 116470304 -25801140 - MIR SINE MIR -1 261 16 497 238 178 5 chr9 116471637 116471822 -25799622 - MIR SINE MIR -25 237 21 437 321 88 19 chr9 116472835 116473050 -25798394 + MIR SINE MIR 25 254 -8 210 293 52 35 chr9 116473261 116473377 -25798067 - MIR SINE MIR -71 137 20 238 294 44 59 chr9 116473625 116473761 -25797683 + MIR3 SINE MIR 10 143 -65 548 353 38 21 chr9 116473941 116474179 -25797265 + MIR SINE MIR 21 262 0 317 288 139 0 chr9 116475380 116475536 -25795908 - MIR SINE MIR -53 209 33 418 281 126 24 chr9 116475722 116475889 -25795555 + MIR SINE MIR 56 239 -23 336 339 8 0 chr9 116476128 116476246 -25795198 + MIR SINE MIR 30 148 -60 289 206 33 22 chr9 116476802 116476894 -25794550 + MIR3 SINE MIR 95 187 -21 486 268 16 88 chr9 116476986 116477180 -25794264 + MIR SINE MIR 12 191 -71 287 251 36 20 chr9 116477196 116477314 -25794130 + L2 LINE L2 2867 2983 -289 269 313 0 0 chr9 116477354 116477450 -25793994 - MIR SINE MIR -21 241 146 359 268 65 8 chr9 116477454 116477577 -25793867 + MIR SINE MIR 2 131 -131 699 293 79 33 chr9 116477638 116477942 -25793502 + L2 LINE L2 2995 3312 -1 1451 219 96 59 chr9 116478015 116478372 -25793072 - MLT1J LTR MaLR 0 511 130 1522 148 59 59 chr9 116478372 116478676 -25792768 + AluJo SINE Alu 1 304 -8 1451 219 96 59 chr9 116478676 116478810 -25792634 - MLT1J LTR MaLR -381 130 2 249 221 36 164 chr9 116478872 116478921 -25792523 - MLT1H LTR MaLR 0 549 495 1900 98 44 7 chr9 116478921 116479231 -25792213 + AluSx SINE Alu 1 320 0 249 221 36 164 chr9 116479231 116479320 -25792124 - MLT1H LTR MaLR -54 495 428 4167 173 46 64 chr9 116479440 116480569 -25790875 - L1MD2 LINE L1 -8 6234 5128 586 183 0 9 chr9 116480640 116480755 -25790689 - L1MC/D LINE L1 -635 5724 5611 430 219 73 0 chr9 116480753 116480876 -25790568 - L1MD2 LINE L1 -1073 5073 4942 * 2218 112 0 3 chr9 116480906 116481218 -25790226 + AluSq SINE Alu 1 311 -2 237 295 95 21 chr9 116481224 116481414 -25790030 + L1MEc LINE L1 1282 1485 -4911 446 211 216 57 chr9 116482401 116482595 -25788849 - MIR SINE MIR -8 254 30 324 260 10 48 chr9 116482654 116482758 -25788686 + MIR SINE MIR 50 149 -59 1862 166 53 34 chr9 116483058 116483438 -25788006 - MLT1B LTR MaLR -3 387 1 218 258 97 77 chr9 116483999 116484154 -25787290 - L2 LINE L2 -190 3082 2925 419 335 44 6 chr9 116484842 116485024 -25786420 - MIR SINE MIR -17 245 57 1122 115 30 0 chr9 116485852 116486017 -25785427 + AluSg/x SINE Alu 135 304 -8 236 118 37 59 chr9 116486266 116486402 -25785042 + (CA)n Simple_repeat Simple_repeat 2 134 0 357 191 34 56 chr9 116486432 116486610 -25784834 + (CA)n Simple_repeat Simple_repeat 1 174 0 240 75 38 19 chr9 116486663 116486716 -25784728 + (CA)n Simple_repeat Simple_repeat 2 55 0 209 189 0 0 chr9 116487116 116487153 -25784291 + (TG)n Simple_repeat Simple_repeat 2 38 0 230 309 166 30 chr9 116487662 116487963 -25783481 - L2 LINE L2 -95 3177 2836 301 263 102 27 chr9 116488184 116488316 -25783128 + MIR SINE MIR 14 150 -58 377 318 46 7 chr9 116488703 116488854 -25782590 - MIR SINE MIR -66 196 40 266 296 151 13 chr9 116488854 116489013 -25782431 + L2 LINE L2 3089 3269 -3 331 263 40 0 chr9 116489819 116489918 -25781526 - MIR SINE MIR -11 251 149 598 271 7 0 chr9 116489977 116490132 -25781312 - MER5B DNA MER1_type -20 158 3 405 153 0 0 chr9 116490164 116490236 -25781208 - L1MA10 LINE L1 -3 6331 6260 4274 142 22 38 chr9 116490244 116490483 -25780961 - L1MB2 LINE L1 -31 6140 5899 2047 113 10 16 chr9 116490483 116490792 -25780652 + AluSx SINE Alu 1 307 -5 4274 142 22 38 chr9 116490792 116491361 -25780083 - L1MB2 LINE L1 -272 5899 5345 635 237 72 39 chr9 116491377 116491702 -25779742 - LTR33 LTR ERVL -114 407 10 188 276 17 17 chr9 116491703 116491761 -25779683 - MIR SINE MIR -86 176 119 181 339 0 0 chr9 116492137 116492199 -25779245 - MIR3 SINE MIR -31 177 116 286 364 25 8 chr9 116492645 116492763 -25778681 - MIR3 SINE MIR 0 208 89 217 297 22 11 chr9 116493079 116493170 -25778274 - MIR3 SINE MIR -8 200 109 718 172 115 0 chr9 116493322 116493479 -25777965 - MER20 DNA MER1_type -6 213 39 337 258 2 11 chr9 116493984 116494088 -25777356 + MIR SINE MIR 44 148 -60 192 97 0 0 chr9 116495550 116495581 -25775863 + (TG)n Simple_repeat Simple_repeat 1 31 0 206 326 106 0 chr9 116495644 116495776 -25775668 - MIR3 SINE MIR -1 207 62 451 255 124 13 chr9 116496096 116496249 -25775195 - MIR SINE MIR -73 189 20 192 258 169 22 chr9 116496371 116496460 -25774984 + MIR3 SINE MIR 74 175 -33 879 228 65 14 chr9 116496546 116496761 -25774683 + MIR SINE MIR 20 245 -17 2111 46 0 4 chr9 116496764 116497023 -25774421 - AluY SINE Alu -14 297 40 200 211 96 0 chr9 116498105 116498157 -25773287 + L2 LINE L2 3168 3224 -89 241 286 155 0 chr9 116498895 116498979 -25772465 - MIR3 SINE MIR -3 205 109 1675 240 102 17 chr9 116499738 116500386 -25771058 - MER21B LTR ERV1 -125 738 1 296 289 224 55 chr9 116500747 116501149 -25770295 + L2 LINE L2 2844 3313 0 2909 187 72 56 chr9 116501207 116501501 -25769943 + L1MB7 LINE L1 5296 5584 -594 2200 108 0 3 chr9 116501501 116501806 -25769638 + AluSx SINE Alu 1 304 -8 2909 187 72 56 chr9 116501806 116502214 -25769230 + L1MB7 LINE L1 5584 5984 -194 490 134 0 49 chr9 116502214 116502296 -25769148 - MADE1 DNA Mariner 0 80 3 2909 187 72 56 chr9 116502296 116502401 -25769043 + L1MB7 LINE L1 5984 6113 -65 2028 117 0 26 chr9 116502401 116502709 -25768735 - AluSx SINE Alu -12 300 1 2909 187 72 56 chr9 116502709 116502766 -25768678 + L1MB7 LINE L1 6113 6168 -10 204 40 0 0 chr9 116502905 116502930 -25768514 + (TG)n Simple_repeat Simple_repeat 2 26 0 356 290 40 0 chr9 116503410 116503534 -25767910 - MIR SINE MIR -66 196 68 325 263 84 0 chr9 116503530 116503625 -25767819 + MIR SINE MIR 94 196 -66 * 222 342 13 0 chr9 116504232 116504311 -25767133 + MIR SINE MIR 74 153 -55 530 237 23 8 chr9 116504374 116504505 -25766939 + MER20B DNA MER1_type 36 168 -615 583 302 49 20 chr9 116505322 116505567 -25765877 + MIR SINE MIR 11 262 0 534 286 20 56 chr9 116505633 116505723 -25765721 - MIR SINE MIR -54 208 116 2333 82 0 3 chr9 116505723 116506029 -25765415 + AluY SINE Alu 1 305 -6 534 286 20 56 chr9 116506029 116506134 -25765310 - MIR SINE MIR -146 116 20 242 268 18 0 chr9 116506154 116506210 -25765234 + L3 LINE CR1 1393 1449 -128 192 200 0 0 chr9 116506424 116506464 -25764980 + (TG)n Simple_repeat Simple_repeat 2 41 0 236 238 95 0 chr9 116507070 116507154 -25764290 + L3b LINE CR1 1277 1368 -215 239 241 17 0 chr9 116507568 116507626 -25763818 - MIR SINE MIR -88 120 62 257 217 0 0 chr9 116507859 116507905 -25763539 + tRNA-Leu-CTG tRNA tRNA 36 81 -5 580 295 170 5 chr9 116508146 116508370 -25763074 + MIR SINE MIR 2 262 0 193 265 0 0 chr9 116509394 116509443 -25762001 + L2 LINE L2 2986 3034 -238 * 375 337 67 60 chr9 116509435 116509699 -25761745 + L2 LINE L2 2817 3086 -186 2600 127 84 0 chr9 116509699 116510093 -25761351 + MSTA LTR MaLR 1 427 -1 375 337 67 60 chr9 116510093 116510229 -25761215 + L2 LINE L2 3086 3220 -52 441 250 56 12 chr9 116510361 116510521 -25760923 - L1ME3A LINE L1 -8 6162 5996 1235 185 101 25 chr9 116510625 116510911 -25760533 - AluJo SINE Alu 0 312 5 960 266 128 34 chr9 116510916 116511449 -25759995 - L1M4 LINE L1 -942 5204 4622 357 82 0 0 chr9 116511452 116511501 -25759943 + (CA)n Simple_repeat Simple_repeat 2 50 0 269 191 119 186 chr9 116511593 116511787 -25759657 - L1M4 LINE L1 -1227 4919 4739 1931 161 7 3 chr9 116512114 116512412 -25759032 + AluJb SINE Alu 2 300 -12 2100 95 92 0 chr9 116512412 116512695 -25758749 + AluSc SINE Alu 1 309 0 2085 150 0 0 chr9 116512925 116513219 -25758225 - AluSx SINE Alu -18 294 1 197 359 109 0 chr9 116513308 116513400 -25758044 + L2 LINE L2 3155 3256 -16 8115 219 55 43 chr9 116513470 116513993 -25757451 - L1ME1 LINE L1 -4 6162 5647 1322 78 11 16 chr9 116513993 116514184 -25757260 + MER30B DNA MER1_type 1 190 0 8115 219 55 43 chr9 116514184 116517208 -25754236 - L1ME1 LINE L1 -519 5647 2590 1840 125 14 54 chr9 116517902 116518253 -25753191 + MER1B DNA MER1_type 1 337 0 350 348 137 5 chr9 116518400 116518604 -25752840 - MIR SINE MIR -12 250 20 450 305 0 21 chr9 116519005 116519146 -25752298 + MIR SINE MIR 16 153 -55 640 287 42 13 chr9 116519336 116519573 -25751871 + L2 LINE L2 2733 2976 -338 897 222 65 134 chr9 116519573 116520066 -25751378 - MLT1H LTR MaLR 0 548 118 2009 122 28 3 chr9 116520066 116520353 -25751091 - AluJo SINE Alu -16 296 3 897 222 65 134 chr9 116520353 116520441 -25751003 - MLT1H LTR MaLR -430 118 26 454 314 66 31 chr9 116521287 116521513 -25749931 - MIR SINE MIR 0 262 29 247 258 22 45 chr9 116522110 116522199 -25749245 - MIR3 SINE MIR -41 167 81 475 248 15 15 chr9 116522521 116522654 -25748790 + MIR3 SINE MIR 14 146 -62 339 219 59 47 chr9 116522740 116522898 -25748546 - MIR3 SINE MIR -78 130 15 393 252 92 0 chr9 116523103 116523222 -25748222 - L3 LINE CR1 -101 1476 1347 221 319 166 24 chr9 116523550 116523677 -25747767 + MIR SINE MIR 16 160 -58 245 214 36 0 chr9 116524657 116524713 -25746731 - MER5A DNA MER1_type -119 70 13 1661 151 12 12 chr9 116524899 116525158 -25746286 + AluJo SINE Alu 39 297 -15 272 295 33 16 chr9 116525158 116525280 -25746164 + L1MC4 LINE L1 7166 7289 -753 315 319 126 49 chr9 116525439 116525891 -25745553 + L1MC4 LINE L1 7519 8005 -37 261 0 0 0 chr9 116525916 116525945 -25745499 + (CA)n Simple_repeat Simple_repeat 2 30 0 2175 116 0 38 chr9 116525955 116526274 -25745170 + AluSg SINE Alu 1 307 -3 607 305 11 5 chr9 116526562 116526749 -25744695 + MIR SINE MIR 12 199 -63 288 229 24 12 chr9 116527126 116527209 -25744235 + MLT1I LTR MaLR 324 407 -2 407 229 7 83 chr9 116527727 116527871 -25743573 + L2 LINE L2 2914 3046 -226 409 248 52 72 chr9 116528346 116528499 -25742945 - L2 LINE L2 -1 3312 3163 2437 93 0 0 chr9 116528510 116528810 -25742634 + AluSx SINE Alu 1 300 -12 706 228 147 22 chr9 116528940 116529164 -25742280 - MIR SINE MIR 0 262 11 187 238 0 0 chr9 116529443 116529506 -25741938 - L2 LINE L2 -215 3057 2995 211 295 219 0 chr9 116529729 116529939 -25741505 + L2 LINE L2 2804 3059 -254 472 318 11 11 chr9 116530196 116530372 -25741072 + (CA)n Simple_repeat Simple_repeat 1 176 0 202 373 34 23 chr9 116530300 116530477 -25740967 + (CATG)n Simple_repeat Simple_repeat 1 179 0 * 268 305 28 35 chr9 116530426 116530479 -25740965 + (CATATA)n Simple_repeat Simple_repeat 2 54 -87 234 0 0 0 chr9 116530479 116530505 -25740939 + (CA)n Simple_repeat Simple_repeat 1 26 0 268 305 28 35 chr9 116530505 116530592 -25740852 + (CATATA)n Simple_repeat Simple_repeat 54 141 0 333 186 0 0 chr9 116531144 116531214 -25740230 + GA-rich Low_complexity Low_complexity 1 70 0 379 219 12 0 chr9 116531225 116531307 -25740137 - MER81 DNA DNA -30 84 2 188 257 208 40 chr9 116531757 116531858 -25739586 - MER5A DNA MER1_type -2 187 70 2635 123 38 25 chr9 116531877 116532355 -25739089 - MER31A LTR ERV1 -1 484 1 405 293 186 50 chr9 116533357 116533695 -25737749 + HAL1b LINE L1 345 633 -951 726 254 51 34 chr9 116533746 116533982 -25737462 - MIR SINE MIR -10 252 13 468 268 11 31 chr9 116534010 116534248 -25737196 + HAL1b LINE L1 831 932 -652 2262 104 3 7 chr9 116534250 116534558 -25736886 + AluSp SINE Alu 5 311 -2 2330 102 0 0 chr9 116535143 116535436 -25736008 - AluSx SINE Alu -17 295 3 317 346 84 0 chr9 116537481 116537694 -25733750 - MIR SINE MIR -10 252 18 280 193 0 0 chr9 116538143 116538200 -25733244 + MIR3 SINE MIR 115 171 -37 375 340 123 8 chr9 116538373 116538626 -25732818 + L2 LINE L2 2910 3191 -81 234 0 0 0 chr9 116538747 116538773 -25732671 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 644 208 8 0 chr9 116538777 116538907 -25732537 + FLAM_C SINE Alu 2 132 -11 901 261 10 0 chr9 116539466 116539673 -25731771 + MIR SINE MIR 4 212 -50 342 317 131 35 chr9 116539721 116539980 -25731464 - L2 LINE L2 -72 3241 2958 2491 61 0 3 chr9 116540034 116540329 -25731115 - AluY SINE Alu -15 296 3 2244 93 10 17 chr9 116540331 116540632 -25730812 - AluSp SINE Alu -14 299 1 250 188 24 47 chr9 116541285 116541370 -25730074 + A-rich Low_complexity Low_complexity 3 85 0 947 151 12 0 chr9 116541541 116541713 -25729731 + CT-rich Low_complexity Low_complexity 2 175 0 180 0 0 0 chr9 116541711 116541731 -25729713 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 2079 125 14 3 chr9 116541731 116542028 -25729416 - AluSc SINE Alu -9 300 1 272 346 0 19 chr9 116542168 116542272 -25729172 + MIR SINE MIR 28 129 -79 1132 252 103 29 chr9 116542287 116542703 -25728741 + MLT1J2 LTR MaLR 1 447 -3 261 365 115 5 chr9 116542871 116543063 -25728381 + L2 LINE L2 2635 2847 -467 210 333 24 32 chr9 116543334 116543445 -25727999 + L2 LINE L2 3183 3294 -19 1782 143 64 9 chr9 116543445 116543774 -25727670 - MER7A DNA MER2_type -1 345 1 210 333 24 32 chr9 116543774 116543785 -25727659 + L2 LINE L2 3294 3304 -9 2460 87 0 3 chr9 116545411 116545723 -25725721 - AluY SINE Alu 0 311 1 1215 140 6 0 chr9 116545748 116545942 -25725502 + AluSg/x SINE Alu 112 306 0 208 299 93 21 chr9 116546402 116546499 -25724945 + L2 LINE L2 3116 3219 -53 2097 119 3 14 chr9 116546814 116547108 -25724336 + AluSq SINE Alu 1 291 -22 300 53 0 0 chr9 116547111 116547149 -25724295 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 290 171 73 12 chr9 116547585 116547667 -25723777 - MLT1K LTR MaLR -11 577 491 2168 129 3 0 chr9 116547746 116548041 -25723403 + AluSx SINE Alu 1 296 -16 1299 256 67 61 chr9 116548231 116548658 -25722786 - MLT1H LTR MaLR 0 549 117 2343 117 0 0 chr9 116548658 116548958 -25722486 + AluSx SINE Alu 1 300 -12 1299 256 67 61 chr9 116548958 116549054 -25722390 - MLT1H LTR MaLR -432 117 23 422 321 109 17 chr9 116549246 116549548 -25721896 - MLT1K LTR MaLR -131 457 128 363 266 106 9 chr9 116550208 116550321 -25721123 - L2 LINE L2 0 3313 3190 423 239 77 0 chr9 116550321 116550438 -25721006 + MER103 DNA DNA 39 164 -2 224 253 253 33 chr9 116550459 116550609 -25720835 - MIR3 SINE MIR -3 205 23 662 164 25 28 chr9 116550645 116551152 -25720292 + CT-rich Low_complexity Low_complexity 1 505 0 253 254 9 82 chr9 116551630 116551740 -25719704 - MIR SINE MIR -71 137 36 346 287 15 33 chr9 116551947 116552108 -25719336 - MIR3 SINE MIR -54 154 7 2393 71 3 49 chr9 116552171 116552496 -25718948 + AluY SINE Alu 1 310 -1 21 0 0 0 chr9 116553088 116553109 -25718335 + AT_rich Low_complexity Low_complexity 1 21 0 465 274 75 7 chr9 116553536 116553682 -25717762 - MIR SINE MIR -66 196 41 418 250 16 39 chr9 116553741 116553869 -25717575 + MIR3 SINE MIR 82 206 -2 441 281 54 30 chr9 116553991 116554158 -25717286 - MIR SINE MIR -44 218 48 307 236 118 36 chr9 116554236 116554346 -25717098 + L2 LINE L2 3150 3268 -4 218 130 0 56 chr9 116554871 116554925 -25716519 + (GAAAA)n Simple_repeat Simple_repeat 1 51 0 467 291 25 26 chr9 116555587 116555740 -25715704 - MIR SINE MIR -52 210 60 2485 65 7 0 chr9 116555740 116556034 -25715410 - AluSq SINE Alu -17 296 1 467 291 25 26 chr9 116556034 116556086 -25715358 - MIR SINE MIR -202 60 9 210 347 53 0 chr9 116556406 116556501 -25714943 - L2 LINE L2 -1 3312 3213 527 295 164 44 chr9 116556523 116556980 -25714464 - L2 LINE L2 -354 2960 2449 382 223 58 29 chr9 116557034 116557137 -25714307 - L2 LINE L2 0 3313 3208 1273 180 0 52 chr9 116557370 116557637 -25713807 - AluJo SINE Alu 0 312 60 393 307 49 53 chr9 116557861 116558105 -25713339 - L2 LINE L2 -735 2579 2337 2444 96 21 19 chr9 116558292 116558666 -25712778 + THE1C LTR MaLR 1 375 0 344 308 91 7 chr9 116558673 116558816 -25712628 + L1ME4a LINE L1 5949 6103 -18 384 183 34 40 chr9 116559592 116559767 -25711677 + GA-rich Low_complexity Low_complexity 1 174 0 244 169 40 45 chr9 116559793 116559970 -25711474 + GA-rich Low_complexity Low_complexity 3 178 0 191 226 0 16 chr9 116560001 116560063 -25711381 + G-rich Low_complexity Low_complexity 4 64 0 431 315 95 18 chr9 116560944 116561108 -25710336 + MIR SINE MIR 17 190 -62 220 322 124 8 chr9 116561135 116561256 -25710188 - MIR SINE MIR -54 154 20 336 322 109 16 chr9 116561534 116561717 -25709727 + MIR SINE MIR 9 208 -54 223 195 0 0 chr9 116562255 116562296 -25709148 + (TTA)n Simple_repeat Simple_repeat 2 42 0 388 296 82 6 chr9 116562316 116562475 -25708969 - MER117 DNA MER1_type -26 171 1 195 354 13 0 chr9 116563222 116563301 -25708143 + MIR SINE MIR 74 153 -109 793 204 5 91 chr9 116563453 116563614 -25707830 + MER3 DNA MER1_type 1 140 -69 2404 86 3 0 chr9 116563614 116563915 -25707529 - AluSp SINE Alu -7 306 5 793 204 5 91 chr9 116563915 116563974 -25707470 + MER3 DNA MER1_type 140 202 -7 242 250 305 16 chr9 116564107 116564235 -25707209 - MIR3 SINE MIR -32 176 12 2563 59 3 0 chr9 116564425 116564731 -25706713 - AluY SINE Alu -4 307 1 251 239 14 0 chr9 116565436 116565507 -25705937 + MER117 DNA MER1_type 100 171 -26 24 85 0 0 chr9 116565571 116565630 -25705814 + AT_rich Low_complexity Low_complexity 1 59 0 334 212 68 116 chr9 116565801 116565947 -25705497 + L2 LINE L2 3161 3299 -14 4473 160 75 8 chr9 116565952 116567070 -25704374 + L1MB8 LINE L1 4989 6178 0 327 49 0 0 chr9 116567602 116567643 -25703801 + (CA)n Simple_repeat Simple_repeat 2 42 0 372 324 8 11 chr9 116567678 116567947 -25703497 + (CA)n Simple_repeat Simple_repeat 1 267 0 2235 97 120 49 chr9 116568963 116569132 -25702312 + MSTA LTR MaLR 1 156 -272 2300 124 7 0 chr9 116569132 116569438 -25702006 + AluSx SINE Alu 1 308 -4 2235 97 120 49 chr9 116569438 116569593 -25701851 + MSTA LTR MaLR 156 360 -68 2022 149 0 13 chr9 116569593 116569908 -25701536 - AluSx SINE Alu -1 311 1 2235 97 120 49 chr9 116569908 116569973 -25701471 + MSTA LTR MaLR 360 419 -9 1002 253 128 27 chr9 116570376 116570586 -25700858 + LTR16C LTR ERVL 88 275 -216 1743 154 133 18 chr9 116570586 116570968 -25700476 + MSTA LTR MaLR 1 426 -2 1002 253 128 27 chr9 116570968 116571124 -25700320 + LTR16C LTR ERVL 275 491 0 391 306 0 86 chr9 116571236 116571422 -25700022 - MIR SINE MIR -33 229 60 2418 91 0 3 chr9 116571424 116571733 -25699711 + AluSx SINE Alu 5 312 0 326 292 22 36 chr9 116572060 116572197 -25699247 + L2 LINE L2 3167 3301 -12 542 227 47 0 chr9 116573383 116573511 -25697933 + MLT1G1 LTR MaLR 1 134 -461 312 229 66 41 chr9 116573509 116573631 -25697813 + MLT1H1 LTR MaLR 100 224 -306 * 415 246 120 0 chr9 116573707 116573849 -25697595 + MLT1H1 LTR MaLR 397 555 0 334 310 76 8 chr9 116573853 116573990 -25697454 - MIR SINE MIR -68 140 41 888 113 8 23 chr9 116573990 116574123 -25697321 + FLAM_C SINE Alu 1 131 -2 334 310 76 8 chr9 116574123 116574136 -25697308 - MIR SINE MIR -167 41 30 721 221 23 6 chr9 116574443 116574615 -25696829 - MER5B DNA MER1_type 0 178 4 222 91 0 0 chr9 116574769 116574802 -25696642 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1402 181 71 39 chr9 116575432 116575713 -25695731 + AluJo SINE Alu 3 292 -20 573 203 13 72 chr9 116575781 116575934 -25695510 - MER5B DNA MER1_type -34 144 1 1098 275 68 53 chr9 116575934 116576553 -25694891 + L1MC4a LINE L1 4811 4972 -1174 2074 146 27 11 chr9 116576553 116576922 -25694522 + THE1C LTR MaLR 1 375 0 1098 275 68 53 chr9 116576922 116577361 -25694083 + L1MC4a LINE L1 4972 5403 -743 2118 133 0 26 chr9 116577570 116577879 -25693565 + AluSx SINE Alu 2 302 -10 217 291 0 47 chr9 116577982 116578068 -25693376 + MIR SINE MIR 41 122 -86 1190 210 72 70 chr9 116579110 116579481 -25691963 + MLT2B1 LTR ERVL 105 374 -40 233 232 0 0 chr9 116579549 116579605 -25691839 + MLT2B1 LTR ERVL 464 519 -1 353 258 11 0 chr9 116579885 116579978 -25691466 - MIR SINE MIR -118 144 51 2177 139 27 33 chr9 116580023 116580389 -25691055 + THE1B LTR MaLR 1 364 0 424 206 138 70 chr9 116580502 116580847 -25690597 + MLT1F LTR MaLR 82 450 0 315 295 110 60 chr9 116580946 116581282 -25690162 + MLT1I LTR MaLR 31 383 -26 285 29 0 0 chr9 116581851 116581885 -25689559 + (GA)n Simple_repeat Simple_repeat 1 34 0 197 291 243 17 chr9 116581917 116582207 -25689237 - L2 LINE L2 -52 3220 2868 459 273 103 0 chr9 116582250 116582415 -25689029 + MIR SINE MIR 10 191 -71 233 330 51 8 chr9 116582585 116582703 -25688741 + MIR SINE MIR 20 142 -120 312 305 25 17 chr9 116583352 116583473 -25687971 + MIR SINE MIR 44 164 -65 207 304 0 14 chr9 116584773 116584842 -25686602 - MIR SINE MIR -31 231 164 1417 158 95 4 chr9 116585220 116585461 -25685983 + AluSx SINE Alu 5 267 -45 1674 130 128 68 chr9 116585824 116586192 -25685252 - MSTD LTR MaLR -6 390 1 666 284 77 34 chr9 116586212 116586312 -25685132 + L1ME4a LINE L1 5482 5576 -545 2021 160 0 0 chr9 116586312 116586612 -25684832 + AluSx SINE Alu 1 300 -12 666 284 77 34 chr9 116586612 116586989 -25684455 + L1ME4a LINE L1 5576 5980 -141 189 107 0 0 chr9 116587037 116587065 -25684379 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 382 272 22 77 chr9 116587145 116587457 -25683987 + L1MB5 LINE L1 2968 3262 -2884 2371 142 26 47 chr9 116588744 116589166 -25682278 - MLT2D LTR ERVL 0 414 2 635 298 55 18 chr9 116589182 116589400 -25682044 - LTR16A LTR ERVL -47 403 178 344 242 0 0 chr9 116589411 116589477 -25681967 - MLT1A1 LTR MaLR -262 103 38 1158 221 12 24 chr9 116589494 116589747 -25681697 + MLT1A1 LTR MaLR 116 365 0 481 283 79 6 chr9 116589838 116590015 -25681429 - MIR SINE MIR -41 221 32 695 329 0 0 chr9 116590170 116590380 -25681064 - MIR SINE MIR -51 211 2 2360 90 7 0 chr9 116590497 116590796 -25680648 + AluY SINE Alu 2 302 -9 441 344 106 7 chr9 116591754 116592158 -25679286 + L2 LINE L2 2342 2785 -529 1446 226 33 30 chr9 116592159 116592528 -25678916 + MLT1A2 LTR MaLR 1 464 -3 437 336 45 4 chr9 116592782 116593026 -25678418 + LTR16C LTR ERVL 238 491 0 313 338 90 20 chr9 116593039 116593240 -25678204 + L2 LINE L2 3058 3272 0 966 176 45 0 chr9 116593253 116593429 -25678015 + L1MB5 LINE L1 3943 4126 -2020 1608 136 9 0 chr9 116593439 116593660 -25677784 + AluSx SINE Alu 23 245 -67 1299 101 74 0 chr9 116593693 116593910 -25677534 - L1MA8 LINE L1 -3 6288 6056 23 0 0 0 chr9 116593921 116593944 -25677500 + AT_rich Low_complexity Low_complexity 1 23 0 863 205 0 6 chr9 116593944 116594105 -25677339 - FRAM SINE Alu -23 153 1 4478 181 35 5 chr9 116594118 116595963 -25675481 + L1MB5 LINE L1 4156 6174 0 1940 154 3 7 chr9 116595970 116596268 -25675176 + AluJb SINE Alu 1 297 -15 4152 17 0 0 chr9 116596441 116596906 -25674538 - L1PA3 LINE L1 0 6155 5691 280 264 110 11 chr9 116597385 116597476 -25673968 + MIR SINE MIR 33 132 -76 307 281 75 31 chr9 116597510 116597670 -25673774 + L1ME4a LINE L1 5615 5781 -340 480 218 60 8 chr9 116597761 116597894 -25673550 + L1ME4a LINE L1 5970 6109 -12 193 28 0 56 chr9 116597970 116598006 -25673438 + (AAATG)n Simple_repeat Simple_repeat 4 37 0 2540 83 3 0 chr9 116598215 116598527 -25672917 - AluSp SINE Alu 0 313 1 875 152 0 0 chr9 116598694 116598826 -25672618 + FLAM_C SINE Alu 2 133 0 192 125 0 0 chr9 116599033 116599065 -25672379 + (TG)n Simple_repeat Simple_repeat 1 32 0 1668 159 22 11 chr9 116599068 116599345 -25672099 - AluJb SINE Alu -32 280 1 330 224 21 56 chr9 116599585 116599728 -25671716 - HAL1b LINE L1 -296 1052 915 347 263 128 45 chr9 116599728 116599971 -25671473 - L1MEd LINE L1 -4093 2732 2470 1422 164 131 54 chr9 116600198 116600533 -25670911 - MLT1A1 LTR MaLR -2 363 3 273 275 59 63 chr9 116600773 116600969 -25670475 - L1MEd LINE L1 -4881 1753 1677 2459 97 0 0 chr9 116600969 116601280 -25670164 - AluSq SINE Alu -2 311 1 273 275 59 63 chr9 116601280 116601338 -25670106 - L1MEd LINE L1 -4957 1677 1620 1991 117 4 0 chr9 116601341 116601606 -25669838 + AluSx SINE Alu 31 296 -16 226 232 0 0 chr9 116601665 116601721 -25669723 + L1MC4 LINE L1 6648 6703 -1339 269 263 6 70 chr9 116601724 116601836 -25669608 - L1MEd LINE L1 -5065 1569 1470 1596 175 23 40 chr9 116601836 116602139 -25669305 - AluJb SINE Alu -10 302 5 269 263 6 70 chr9 116602139 116602197 -25669247 - L1MEd LINE L1 -5164 1470 1410 2480 173 14 42 chr9 116602423 116602943 -25668501 - L1MB7 LINE L1 -17 6167 5663 929 184 8 33 chr9 116602943 116603179 -25668265 - L1MEd LINE L1 -5147 1395 1164 1412 198 0 12 chr9 116603181 116603473 -25667971 + AluJb SINE Alu 42 330 0 4806 181 44 77 chr9 116603475 116603893 -25667551 - L1MEd LINE L1 -5364 1178 748 207 69 0 0 chr9 116603893 116603922 -25667522 + (TG)n Simple_repeat Simple_repeat 1 29 0 4806 181 44 77 chr9 116603922 116604658 -25666786 - L1MEd LINE L1 -5794 748 62 327 230 27 0 chr9 116605388 116605462 -25665982 - HAL1b LINE L1 -415 933 858 2135 144 0 26 chr9 116606554 116606900 -25664544 + MER1B DNA MER1_type 1 337 0 264 274 48 0 chr9 116607316 116607400 -25664044 - MLT1J LTR MaLR -1 510 423 569 265 0 26 chr9 116607583 116607734 -25663710 - MLT1J LTR MaLR -278 233 87 527 217 78 16 chr9 116608238 116608367 -25663077 - FLAM_C SINE Alu -5 138 2 181 223 121 102 chr9 116608896 116609062 -25662382 - MIR SINE MIR -83 179 11 2240 93 0 26 chr9 116609538 116609848 -25661596 - AluSc SINE Alu -2 307 6 213 213 0 0 chr9 116610571 116610618 -25660826 + CT-rich Low_complexity Low_complexity 4 50 0 856 138 6 22 chr9 116610619 116610800 -25660644 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 254 79 0 26 chr9 116610800 116610838 -25660606 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 545 184 9 0 chr9 116610838 116610952 -25660492 + CT-rich Low_complexity Low_complexity 1 115 0 953 140 51 0 chr9 116610952 116611109 -25660335 - AluSg/x SINE Alu -11 301 137 316 242 44 22 chr9 116611263 116611354 -25660090 - MER5A DNA MER1_type -80 109 17 861 254 43 0 chr9 116611797 116612006 -25659438 + MIR SINE MIR 28 245 -17 310 268 84 21 chr9 116612033 116612175 -25659269 - MIR SINE MIR -90 172 22 244 364 35 0 chr9 116612187 116612330 -25659114 + (CCCCAA)n Simple_repeat Simple_repeat 2 149 0 373 349 23 0 chr9 116612353 116612528 -25658916 + (CCCCAA)n Simple_repeat Simple_repeat 1 179 0 382 302 22 44 chr9 116612628 116612810 -25658634 + (CCCCAA)n Simple_repeat Simple_repeat 2 179 0 273 374 0 0 chr9 116612831 116612978 -25658466 + (CCCCAA)n Simple_repeat Simple_repeat 3 149 0 347 321 11 43 chr9 116612996 116613180 -25658264 + (CCCCAA)n Simple_repeat Simple_repeat 2 179 0 359 317 11 44 chr9 116613201 116613384 -25658060 + (CCCCAA)n Simple_repeat Simple_repeat 3 179 0 323 352 14 0 chr9 116613402 116613547 -25657897 + (CCCCAA)n Simple_repeat Simple_repeat 2 148 0 197 391 47 8 chr9 116613940 116614068 -25657376 + MIR3 SINE MIR 3 135 -73 457 284 7 14 chr9 116614102 116614243 -25657201 - MIR SINE MIR -110 152 13 1021 118 0 0 chr9 116614368 116614504 -25656940 - AluSg/x SINE Alu -25 287 152 755 241 133 19 chr9 116615416 116615902 -25655542 + L2 LINE L2 2638 3171 -142 293 284 157 29 chr9 116616636 116616840 -25654604 + L3 LINE CR1 1083 1312 -265 338 268 27 9 chr9 116616867 116616979 -25654465 - MER117 DNA MER1_type -26 171 58 317 286 216 4 chr9 116618265 116618506 -25652938 + L1ME4a LINE L1 5649 5940 -181 231 254 175 46 chr9 116619559 116619776 -25651668 + MIR SINE MIR 5 249 -13 255 271 0 0 chr9 116619836 116619906 -25651538 - L1MC4 LINE L1 -59 7983 7914 231 225 25 25 chr9 116619906 116619986 -25651458 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 795 234 135 26 chr9 116620003 116620398 -25651046 - L1MC4 LINE L1 -149 7893 7357 211 204 23 0 chr9 116620523 116620567 -25650877 + CT-rich Low_complexity Low_complexity 2 46 0 408 323 41 46 chr9 116620640 116621076 -25650368 - L1MEc LINE L1 -1173 5042 4609 347 301 120 26 chr9 116621071 116621646 -25649798 - L1MEc LINE L1 -2235 3980 3352 * 615 316 82 43 chr9 116621702 116622006 -25649438 - L1MEc LINE L1 -3372 2843 2552 2045 149 56 12 chr9 116622006 116622328 -25649116 + MER1B DNA MER1_type 1 336 -1 615 316 82 43 chr9 116622328 116622705 -25648739 - L1MEc LINE L1 -3663 2552 2173 532 287 93 61 chr9 116623042 116623250 -25648194 - HAL1b LINE L1 -703 645 445 1158 168 105 113 chr9 116623250 116623649 -25647795 + MSTD LTR MaLR 1 396 0 532 287 93 61 chr9 116623649 116624029 -25647415 - HAL1b LINE L1 -903 445 38 205 189 113 19 chr9 116625193 116625246 -25646198 - L2 LINE L2 -2 3270 3213 186 327 112 19 chr9 116625335 116625442 -25646002 + L2 LINE L2 2854 2970 -343 414 279 50 62 chr9 116625500 116625740 -25645704 + L2 LINE L2 3075 3311 -2 310 287 53 0 chr9 116625723 116625817 -25645627 - MIR SINE MIR -66 142 44 * 306 295 96 77 chr9 116626137 116626564 -25644880 - L2 LINE L2 -22 3250 2816 356 286 178 5 chr9 116626638 116626823 -25644621 - L3 LINE CR1 -5 1572 1356 224 254 56 14 chr9 116627680 116627751 -25643693 - MIR SINE MIR -97 111 38 287 279 23 12 chr9 116628214 116628300 -25643144 - MIR SINE MIR -152 110 24 796 164 86 7 chr9 116628440 116628592 -25642852 + FRAM SINE Alu 1 161 -15 261 0 0 0 chr9 116628592 116628609 -25642835 + (CA)n Simple_repeat Simple_repeat 1 46 0 261 0 0 0 chr9 116628609 116628638 -25642806 + (CA)n Simple_repeat Simple_repeat 2 30 0 317 181 284 9 chr9 116630047 116630163 -25641281 - MIR SINE MIR -14 248 101 1165 144 35 0 chr9 116630196 116630370 -25641074 - MLT1A1 LTR MaLR 0 365 186 903 181 108 27 chr9 116630370 116630629 -25640815 + L1MC3 LINE L1 6819 7098 -687 330 260 20 10 chr9 116630630 116630730 -25640714 + MLT1F1 LTR MaLR 37 137 -430 615 107 0 0 chr9 116630732 116630816 -25640628 + L1MC3 LINE L1 7200 7283 -502 2098 148 70 6 chr9 116630816 116631174 -25640270 - MSTA LTR MaLR 0 428 48 448 116 24 21 chr9 116632071 116632149 -25639295 - MSTA LTR MaLR -371 57 1 2291 173 52 44 chr9 116632149 116632652 -25638792 + L1MC3 LINE L1 7279 7785 0 711 240 29 45 chr9 116632645 116632891 -25638553 + L1ME4a LINE L1 1467 1708 -4832 * 2072 281 99 49 chr9 116633032 116635197 -25636247 + L1ME4a LINE L1 3607 5886 -674 326 120 0 0 chr9 116635197 116635247 -25636197 + LTR33 LTR ERVL 2 51 -470 1033 274 97 12 chr9 116635251 116635591 -25635853 + LTR33 LTR ERVL 153 521 0 572 329 68 27 chr9 116635593 116635958 -25635486 + L1ME4a LINE L1 5888 6267 -297 2079 131 3 3 chr9 116636636 116636941 -25634503 + AluSx SINE Alu 1 305 -7 447 214 12 0 chr9 116637054 116637138 -25634306 + MER58B DNA MER1_type 257 341 0 544 292 146 40 chr9 116637143 116637725 -25633719 - L2 LINE L2 -810 2504 1861 1346 120 5 14 chr9 116638833 116639049 -25632395 + L1PA13 LINE L1 5950 6163 0 2259 122 39 30 chr9 116639357 116639718 -25631726 + THE1B LTR MaLR 1 364 0 992 240 123 27 chr9 116640041 116640341 -25631103 - MLT1I LTR MaLR -1 408 80 241 309 157 22 chr9 116641333 116641511 -25629933 - L1MC/D LINE L1 -2009 5799 5598 225 0 0 0 chr9 116642567 116642592 -25628852 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2036 123 0 14 chr9 116642592 116642876 -25628568 - AluSx SINE Alu -32 280 1 2176 222 63 45 chr9 116642885 116643483 -25627961 - MLT1E2 LTR MaLR 0 626 18 356 233 44 107 chr9 116644158 116644364 -25627080 - MIR3 SINE MIR -15 193 1 753 190 145 20 chr9 116644464 116644664 -25626780 + MIR SINE MIR 4 228 -34 1112 226 92 50 chr9 116644865 116645254 -25626190 - Charlie8 DNA MER1_type -2141 276 1 377 254 54 21 chr9 116645746 116645958 -25625486 + L1MB7 LINE L1 5702 5823 -298 1695 77 0 14 chr9 116646034 116646254 -25625190 + AluY SINE Alu 84 300 -11 228 235 20 69 chr9 116646390 116646492 -25624952 + L1ME4a LINE L1 6361 6457 -58 489 229 19 6 chr9 116646503 116646660 -25624784 + GA-rich Low_complexity Low_complexity 2 160 0 2027 134 10 10 chr9 116646843 116647149 -25624295 + AluSg SINE Alu 1 306 -4 576 224 93 138 chr9 116647751 116648201 -25623243 + MLT1K LTR MaLR 147 576 -12 343 314 19 0 chr9 116648252 116648357 -25623087 + L2 LINE L2 3166 3272 0 211 150 25 0 chr9 116649590 116649630 -25621814 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2198 104 10 7 chr9 116649846 116650143 -25621301 + AluSx SINE Alu 1 298 -14 261 346 10 0 chr9 116650347 116650451 -25620993 + L3 LINE CR1 1374 1478 -99 263 327 10 10 chr9 116650565 116650669 -25620775 + MIR SINE MIR 12 115 -147 445 221 116 68 chr9 116650779 116651214 -25620230 + MLT1G LTR MaLR 12 584 -6 267 282 94 0 chr9 116651990 116652075 -25619369 + L2 LINE L2 2666 2758 -556 783 141 101 144 chr9 116652110 116652396 -25619048 - MLT1B LTR MaLR 0 374 113 867 143 0 0 chr9 116652429 116652548 -25618896 - FRAM SINE Alu -64 112 1 1280 152 172 35 chr9 116652553 116652809 -25618635 - AluJo SINE Alu -21 291 1 547 151 63 56 chr9 116652809 116652935 -25618509 - MLT1B LTR MaLR -263 127 1 557 298 106 5 chr9 116653040 116653238 -25618206 + MIR SINE MIR 45 262 0 257 313 104 18 chr9 116654305 116654468 -25616976 + L3 LINE CR1 1306 1482 -95 539 220 120 7 chr9 116655108 116655258 -25616186 - MIR SINE MIR -82 180 14 506 267 136 0 chr9 116655329 116655523 -25615921 - MIR SINE MIR -12 250 32 1242 183 72 109 chr9 116655663 116656068 -25615376 + MLT1B LTR MaLR 1 390 0 595 225 14 3 chr9 116656140 116656438 -25615006 + (TGGA)n Simple_repeat Simple_repeat 1 301 0 576 270 39 9 chr9 116657894 116658127 -25613317 - MIR SINE MIR -10 252 13 431 288 77 17 chr9 116658134 116658367 -25613077 + MIR SINE MIR 4 250 -12 398 230 0 9 chr9 116658384 116658497 -25612947 + GA-rich Low_complexity Low_complexity 2 113 0 281 214 57 0 chr9 116659708 116659778 -25611666 + MER116 DNA Mariner 6 79 -1 536 311 72 14 chr9 116659814 116660023 -25611421 - MIR SINE MIR -17 245 25 424 242 64 36 chr9 116660622 116660821 -25610623 + MIR SINE MIR 12 214 -48 248 120 20 0 chr9 116661721 116661771 -25609673 + CT-rich Low_complexity Low_complexity 4 54 0 393 242 131 10 chr9 116661773 116661929 -25609515 + MIR SINE MIR 20 196 -62 275 230 35 0 chr9 116662063 116662176 -25609268 + CT-rich Low_complexity Low_complexity 3 119 0 186 315 29 84 chr9 116662222 116662495 -25608949 - L2 LINE L2 -96 3176 2919 275 197 77 51 chr9 116663293 116663410 -25608034 - MIR SINE MIR -119 143 24 236 241 36 12 chr9 116663488 116663571 -25607873 - MIR SINE MIR -77 131 47 501 200 103 106 chr9 116664001 116664262 -25607182 - MLT1H LTR MaLR 0 549 212 2197 115 7 0 chr9 116664262 116664557 -25606887 + AluSx SINE Alu 1 297 -15 501 200 103 106 chr9 116664557 116664645 -25606799 - MLT1H LTR MaLR -337 212 125 378 265 26 34 chr9 116664822 116664939 -25606505 + MIR SINE MIR 132 247 -15 375 178 267 0 chr9 116664950 116665040 -25606404 - MER81 DNA DNA 0 114 1 1095 143 0 12 chr9 116665394 116665555 -25605889 - AluJb SINE Alu -17 295 137 527 317 18 6 chr9 116666526 116666693 -25604751 + MIR SINE MIR 50 218 -44 268 319 0 14 chr9 116666698 116666770 -25604674 - L2 LINE L2 -2 3311 3241 634 245 63 0 chr9 116667313 116667472 -25603972 - MER5A DNA MER1_type -4 185 17 434 173 39 55 chr9 116667484 116667575 -25603869 - MIR SINE MIR -113 149 59 653 174 9 0 chr9 116667575 116667684 -25603760 + MER81 DNA DNA 5 114 0 434 173 39 55 chr9 116667684 116667719 -25603725 - MIR SINE MIR -203 59 25 559 241 123 20 chr9 116667782 116667985 -25603459 - MIR SINE MIR -2 260 37 393 331 111 0 chr9 116668039 116668211 -25603233 + MIR SINE MIR 3 193 -69 327 143 0 0 chr9 116668301 116668357 -25603087 + MLT2D LTR ERVL 278 333 -81 778 84 28 34 chr9 116668405 116668584 -25602860 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 249 111 37 37 chr9 116668603 116668684 -25602760 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 745 90 39 30 chr9 116668724 116668959 -25602485 + (TCTA)n Simple_repeat Simple_repeat 1 237 0 270 150 0 0 chr9 116668962 116669028 -25602416 + MLT2C1 LTR ERVL 357 397 0 282 295 166 26 chr9 116669225 116669705 -25601739 - L2 LINE L2 0 3272 2715 451 296 53 47 chr9 116670434 116670603 -25600841 + L3 LINE CR1 1346 1515 -62 1718 177 3 17 chr9 116670608 116670927 -25600517 - AluSx SINE Alu 0 315 1 1709 174 17 13 chr9 116671576 116671875 -25599569 + AluJb SINE Alu 1 300 -12 189 222 0 0 chr9 116671984 116672020 -25599424 - L2 LINE L2 -73 3199 3164 221 176 35 59 chr9 116672054 116672139 -25599305 + L2 LINE L2 3177 3259 -13 189 0 0 0 chr9 116672141 116672162 -25599282 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 2140 122 0 0 chr9 116672250 116672544 -25598900 + AluSg SINE Alu 1 294 -16 262 299 77 26 chr9 116673264 116673381 -25598063 + MIR SINE MIR 22 144 -64 585 257 28 52 chr9 116673846 116674049 -25597395 - MLT1K LTR MaLR 0 588 391 2296 105 0 3 chr9 116674049 116674354 -25597090 - AluSx SINE Alu -8 304 1 585 257 28 52 chr9 116674354 116674399 -25597045 - MLT1K LTR MaLR -197 391 346 3554 184 56 50 chr9 116674600 116675351 -25596093 + L1MB7 LINE L1 4292 5037 -1147 1648 103 0 18 chr9 116675351 116675575 -25595869 + AluSc SINE Alu 1 220 -89 3554 184 56 50 chr9 116675575 116676617 -25594827 + L1MB7 LINE L1 5037 6101 -83 1968 135 3 38 chr9 116676618 116676937 -25594507 + AluJo SINE Alu 1 308 -4 587 276 100 24 chr9 116677141 116677391 -25594053 + MER41E LTR ERV1 239 507 -5 466 80 27 0 chr9 116677396 116677471 -25593973 + L1MB7 LINE L1 6095 6171 -13 2276 69 18 0 chr9 116677472 116677778 -25593666 - AluSp SINE Alu 0 312 2 340 310 0 0 chr9 116677809 116677909 -25593535 + MIR SINE MIR 157 256 -6 260 324 30 3 chr9 116678625 116678732 -25592712 - MIR SINE MIR -87 121 11 718 231 35 94 chr9 116678746 116678902 -25592542 - MIR SINE MIR -10 252 115 1636 90 27 0 chr9 116678902 116679124 -25592320 + MER30 DNA MER1_type 3 230 0 718 231 35 94 chr9 116679124 116679223 -25592221 - MIR SINE MIR -147 115 12 1585 132 128 0 chr9 116679387 116679645 -25591799 - AluSp SINE Alu -12 291 1 451 221 127 9 chr9 116679888 116680045 -25591399 + MIR SINE MIR 14 187 -65 201 276 40 26 chr9 116680283 116680359 -25591085 - MIR SINE MIR -85 123 47 246 300 43 0 chr9 116680605 116680675 -25590769 + MIR SINE MIR 28 100 -108 241 118 0 0 chr9 116680678 116680712 -25590732 - MER112 DNA MER1_type -33 227 194 185 273 180 17 chr9 116681046 116681176 -25590268 - MIR SINE MIR -58 150 33 365 196 0 76 chr9 116681626 116681718 -25589726 + MIR SINE MIR 62 146 -62 272 30 0 0 chr9 116682217 116682250 -25589194 - U2 snRNA snRNA -155 33 1 464 254 4 59 chr9 116682359 116682499 -25588945 - L1ME3A LINE L1 -214 5956 5833 2181 102 17 3 chr9 116682499 116682792 -25588652 - AluSx SINE Alu -15 297 1 464 254 4 59 chr9 116682792 116682887 -25588557 - L1ME3A LINE L1 -337 5833 5734 283 109 22 0 chr9 116682934 116682980 -25588464 + L2 LINE L2 3263 3309 -4 494 271 7 14 chr9 116683301 116683445 -25587999 + MIR3 SINE MIR 4 146 -62 229 171 0 6 chr9 116683777 116683820 -25587624 + L2 LINE L2 3146 3229 -84 1956 123 0 4 chr9 116683901 116684170 -25587274 - AluSx SINE Alu -44 268 1 476 221 32 65 chr9 116684285 116684502 -25586942 - Charlie4a DNA MER1_type -3 505 296 921 191 0 0 chr9 116684508 116684670 -25586774 + AluJb SINE Alu 139 300 -12 1205 188 36 43 chr9 116684676 116684980 -25586464 - Charlie4a DNA MER1_type -206 302 1 388 299 89 56 chr9 116685451 116686516 -25584928 + L1M4 LINE L1 3100 4199 -1947 22 0 0 0 chr9 116686855 116686877 -25584567 + AT_rich Low_complexity Low_complexity 1 22 0 1850 144 14 14 chr9 116686956 116687241 -25584203 + AluJb SINE Alu 1 285 -27 334 315 9 0 chr9 116687877 116687988 -25583456 + (CA)n Simple_repeat Simple_repeat 1 112 0 188 211 0 18 chr9 116688880 116688937 -25582507 + CT-rich Low_complexity Low_complexity 2 57 0 303 300 154 9 chr9 116689101 116689211 -25582233 + L2 LINE L2 3185 3310 -3 2012 118 0 4 chr9 116689341 116689681 -25581763 - AluSx SINE Alu 0 343 5 1379 152 0 0 chr9 116689996 116690207 -25581237 + AluJb SINE Alu 84 294 -18 22 35 0 0 chr9 116690612 116690641 -25580803 + AT_rich Low_complexity Low_complexity 1 29 0 349 297 18 95 chr9 116691026 116691248 -25580196 + L1MDa LINE L1 2412 2616 -3924 3413 243 76 26 chr9 116691656 116693256 -25578188 + L1MDa LINE L1 1121 2801 -3920 1128 200 110 3 chr9 116693250 116693540 -25577904 + MLT1-int LTR MaLR 281 601 -770 * 2617 233 60 2 chr9 116693536 116694385 -25577059 + L1MDa LINE L1 2760 3657 -2883 1098 227 84 21 chr9 116694391 116694809 -25576635 + L1MDa LINE L1 4281 4724 -1816 868 219 72 25 chr9 116694810 116695047 -25576397 + L1ME1 LINE L1 18 265 -6275 2043 212 79 12 chr9 116695053 116695534 -25575910 + MLT2B1 LTR ERVL 1 513 -7 3643 229 66 69 chr9 116695541 116696911 -25574533 + MLT1A1-int LTR MaLR 5 1370 -1 1410 205 27 43 chr9 116696912 116697236 -25574208 + MLT1A1 LTR MaLR 1 320 -45 2572 107 8 11 chr9 116697236 116697601 -25573843 - THE1B LTR MaLR 0 364 1 1410 205 27 43 chr9 116697601 116697647 -25573797 + MLT1A1 LTR MaLR 320 365 0 7362 201 85 16 chr9 116697652 116699580 -25571864 + L1ME1 LINE L1 272 2332 -4208 214 204 0 20 chr9 116699581 116699630 -25571814 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 387 154 53 0 chr9 116699633 116699802 -25571642 + (TA)n Simple_repeat Simple_repeat 1 178 0 42 20 0 0 chr9 116699804 116699853 -25571591 + AT_rich Low_complexity Low_complexity 1 49 0 216 158 0 0 chr9 116699880 116699918 -25571526 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 227 173 39 0 chr9 116699946 116699998 -25571446 + (TA)n Simple_repeat Simple_repeat 1 54 0 2583 200 47 34 chr9 116700013 116701109 -25570335 + L1ME1 LINE L1 2337 3435 -3105 563 271 23 0 chr9 116701113 116701246 -25570198 + FLAM_A SINE Alu 6 141 -1 3995 233 49 50 chr9 116701246 116701306 -25570138 + L1ME1 LINE L1 3430 3489 -3051 1961 130 14 0 chr9 116701306 116701582 -25569862 + AluSg SINE Alu 1 280 -30 3995 233 49 50 chr9 116701582 116702944 -25568500 + L1ME1 LINE L1 3489 4852 -1688 183 80 0 0 chr9 116702944 116702969 -25568475 + (CATATA)n Simple_repeat Simple_repeat 5 29 0 3995 233 49 50 chr9 116702969 116703251 -25568193 + L1ME1 LINE L1 4852 5133 -1407 1828 204 132 14 chr9 116703263 116703608 -25567836 + L1ME1 LINE L1 5625 5928 -632 1636 181 64 54 chr9 116703608 116703646 -25567798 + MSTD LTR MaLR 1 37 -359 2176 129 0 3 chr9 116703646 116703948 -25567496 - AluSx SINE Alu -11 301 1 1636 181 64 54 chr9 116703948 116704301 -25567143 + MSTD LTR MaLR 37 396 0 1828 204 132 14 chr9 116704301 116704776 -25566668 + L1ME1 LINE L1 5928 6539 -21 303 301 94 52 chr9 116705160 116705373 -25566071 + L1MB7 LINE L1 2945 3166 -2980 1789 165 7 0 chr9 116705406 116705691 -25565753 - AluJb SINE Alu -1 311 25 1530 269 88 28 chr9 116705787 116706356 -25565088 + L1ME4a LINE L1 2 604 -5938 4093 174 47 30 chr9 116706382 116706554 -25564890 + L1MB7 LINE L1 4616 4783 -1401 197 62 0 31 chr9 116706554 116706586 -25564858 + (TA)n Simple_repeat Simple_repeat 1 31 0 4093 174 47 30 chr9 116706586 116707945 -25563499 + L1MB7 LINE L1 4783 6168 -16 22 0 0 0 chr9 116708158 116708180 -25563264 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr9 116708370 116708397 -25563047 + AT_rich Low_complexity Low_complexity 1 27 0 245 293 75 0 chr9 116708402 116708508 -25562936 + L1ME4a LINE L1 4253 4366 -2278 1676 174 23 13 chr9 116708586 116708885 -25562559 - AluJo SINE Alu -10 302 1 3278 73 0 2 chr9 116709415 116709842 -25561602 - L1PA11 LINE L1 -3 6171 5746 2011 71 0 0 chr9 116709842 116710109 -25561335 + L1P4 LINE L1 5444 5710 -464 26 64 0 0 chr9 116710267 116710314 -25561130 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr9 116711967 116711989 -25559455 + AT_rich Low_complexity Low_complexity 1 22 0 2217 152 61 16 chr9 116712151 116712645 -25558799 - Charlie1b DNA MER1_type -6 517 2 2351 116 108 8 chr9 116712841 116713229 -25558215 - MSTA LTR MaLR -1 427 1 205 186 0 0 chr9 116713489 116713532 -25557912 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 270 316 70 48 chr9 116713624 116714184 -25557260 + L1ME4a LINE L1 5007 5578 -1066 246 309 72 0 chr9 116714305 116714457 -25556987 + L1ME4a LINE L1 5854 6016 -656 461 333 40 62 chr9 116714502 116715052 -25556392 + L1ME4a LINE L1 6071 6608 -11 21 0 0 0 chr9 116715052 116715073 -25556371 + AT_rich Low_complexity Low_complexity 1 21 0 441 281 101 6 chr9 116716070 116716248 -25555196 + MIR SINE MIR 20 214 -48 2064 157 120 0 chr9 116716352 116716734 -25554710 - MSTA LTR MaLR 0 428 1 299 269 74 9 chr9 116716793 116716901 -25554543 - MIR SINE MIR -61 147 33 338 270 101 0 chr9 116717401 116717549 -25553895 - MER103 DNA DNA -1 165 3 626 293 109 23 chr9 116717582 116717886 -25553558 + L2 LINE L2 2984 3313 0 416 316 32 7 chr9 116718131 116718286 -25553158 - MIR SINE MIR -12 250 92 3421 210 78 51 chr9 116718295 116718501 -25552943 - L1M4 LINE L1 -1561 5396 5197 660 212 0 23 chr9 116718501 116718633 -25552811 - FLAM_A SINE Alu -4 129 1 3421 210 78 51 chr9 116718633 116720256 -25551188 - L1M4 LINE L1 -1760 5197 3412 478 214 0 0 chr9 116720273 116720362 -25551082 - LTR52-int LTR ERVL -3271 285 197 886 203 17 117 chr9 116720362 116720662 -25550782 - LTR52 LTR ERVL -19 402 133 393 261 51 0 chr9 116720676 116720814 -25550630 - L1M4 LINE L1 -3629 3328 3184 874 213 11 6 chr9 116720814 116720988 -25550456 - AluJo SINE Alu -11 301 127 1277 232 66 101 chr9 116720993 116721077 -25550367 - L1M4 LINE L1 -3787 3170 3085 2259 108 3 22 chr9 116721077 116721393 -25550051 - AluSx SINE Alu -2 310 1 1277 232 66 101 chr9 116721393 116722374 -25549070 - L1M4 LINE L1 -3872 3085 2157 2097 114 7 0 chr9 116722374 116722683 -25548761 - AluSg SINE Alu 0 311 1 1277 232 66 101 chr9 116722683 116722943 -25548501 - L1M4 LINE L1 -4800 2157 1889 469 214 129 62 chr9 116723067 116723277 -25548167 - L1ME LINE L1 -305 5816 5593 1708 234 131 22 chr9 116724241 116724881 -25546563 - L1M4 LINE L1 -4956 1899 1190 317 266 32 32 chr9 116724932 116725056 -25546388 - L1M4 LINE L1 -5655 1200 1077 430 279 53 45 chr9 116725403 116725647 -25545797 - L1M4 LINE L1 -6611 248 3 186 43 0 0 chr9 116725794 116725817 -25545627 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 245 369 39 15 chr9 116725869 116725999 -25545445 - MIR3 SINE MIR -68 140 8 1529 264 50 0 chr9 116726688 116727124 -25544320 + LTR33 LTR ERVL 1 458 -63 374 294 18 0 chr9 116727226 116727335 -25544109 + MIR SINE MIR 35 145 -63 2113 113 7 20 chr9 116727341 116727641 -25543803 + AluSx SINE Alu 1 296 -16 2183 200 77 13 chr9 116727656 116728251 -25543193 - Charlie2 DNA MER1_type 0 2862 2230 520 264 0 50 chr9 116728350 116728509 -25542935 - Charlie2 DNA MER1_type -2503 279 129 1939 122 3 62 chr9 116728548 116728706 -25542738 - AluSx SINE Alu -26 286 153 5768 63 1 1 chr9 116728706 116729432 -25542012 - L1PA8 LINE L1 0 6172 5447 1939 122 3 62 chr9 116729432 116729577 -25541867 - AluSx SINE Alu -159 153 1 412 191 110 59 chr9 116729579 116729715 -25541729 - Charlie2 DNA MER1_type -2639 143 1 417 239 103 39 chr9 116729875 116730030 -25541414 + MIR SINE MIR 80 244 -18 545 305 145 37 chr9 116731007 116731332 -25540112 + MLT1H LTR MaLR 1 360 -189 300 263 13 0 chr9 116731375 116731451 -25539993 + MLT1H LTR MaLR 457 533 -16 510 306 87 0 chr9 116731648 116731821 -25539623 + MIR SINE MIR 2 189 -73 758 146 85 18 chr9 116731828 116731992 -25539452 - L1MA8 LINE L1 -2 6289 6115 3414 132 20 23 chr9 116731993 116732449 -25538995 - L1MA8 LINE L1 -508 5783 5327 2270 107 0 7 chr9 116732449 116732757 -25538687 - AluSc SINE Alu -3 306 1 3414 132 20 23 chr9 116732757 116733238 -25538206 - L1MA8 LINE L1 -964 5327 4842 2089 112 18 0 chr9 116733788 116734064 -25537380 - AluSx SINE Alu -26 286 6 1981 100 0 39 chr9 116734707 116734987 -25536457 + AluSq SINE Alu 34 302 -11 1900 236 79 106 chr9 116735003 116735253 -25536191 - MLT1G LTR MaLR -8 582 327 1622 218 179 23 chr9 116735253 116735766 -25535678 - MLT1E LTR MaLR 0 593 1 1900 236 79 106 chr9 116735766 116736099 -25535345 - MLT1G LTR MaLR -263 327 20 565 250 8 0 chr9 116736166 116736298 -25535146 + MER94 DNA DNA 2 134 0 1234 270 125 11 chr9 116736575 116737023 -25534421 - MLT1K LTR MaLR -57 531 33 939 247 130 78 chr9 116737250 116737512 -25533932 - MLT1H LTR MaLR 0 549 302 1869 169 27 6 chr9 116737512 116737849 -25533595 + MER2 DNA MER2_type 1 344 0 939 247 130 78 chr9 116737849 116737907 -25533537 - MLT1H LTR MaLR -247 302 248 1825 194 0 0 chr9 116737907 116738216 -25533228 - AluJb SINE Alu -3 309 1 939 247 130 78 chr9 116738216 116738416 -25533028 - MLT1H LTR MaLR -301 248 1 2146 158 2 45 chr9 116738570 116738841 -25532603 + L1MB3 LINE L1 5561 5811 -372 2524 55 0 0 chr9 116738841 116739132 -25532312 + AluY SINE Alu 2 292 -19 2146 158 2 45 chr9 116739132 116739264 -25532180 + L1MB3 LINE L1 5811 5947 -236 2215 89 31 3 chr9 116739381 116739673 -25531771 - AluSq SINE Alu -13 300 1 277 301 83 45 chr9 116739969 116740102 -25531342 + MER5B DNA MER1_type 40 177 -1 2551 186 41 65 chr9 116740547 116741224 -25530220 - L1MC4 LINE L1 0 8042 7382 182 234 21 0 chr9 116741236 116741283 -25530161 + MIR SINE MIR 102 149 -113 403 280 19 38 chr9 116741475 116741632 -25529812 - MIR SINE MIR -108 154 1 236 182 152 30 chr9 116741996 116742095 -25529349 - MIR SINE MIR -34 228 118 2479 68 0 0 chr9 116742314 116742609 -25528835 - AluSc SINE Alu -14 295 1 1879 36 54 5 chr9 116744121 116744344 -25527100 - AluY SINE Alu -14 297 64 464 245 65 45 chr9 116744354 116744430 -25527014 - MIR SINE MIR -41 221 148 2202 96 0 3 chr9 116744430 116744781 -25526663 - AluSc SINE Alu 0 350 1 464 245 65 45 chr9 116744781 116744903 -25526541 - MIR SINE MIR -114 148 18 182 324 9 29 chr9 116744996 116745101 -25526343 - L3 LINE CR1 -4 1573 1471 659 269 47 0 chr9 116746059 116746230 -25525214 + MER5A DNA MER1_type 5 183 -6 193 217 0 22 chr9 116746287 116746333 -25525111 + L2 LINE L2 3264 3308 -5 2074 102 20 14 chr9 116746840 116747134 -25524310 - AluSg SINE Alu -14 296 1 212 227 35 43 chr9 116748359 116748500 -25522944 + (CGGG)n Simple_repeat Simple_repeat 2 141 0 274 198 45 9 chr9 116748571 116748682 -25522762 + (CGCGG)n Simple_repeat Simple_repeat 1 115 0 46 62 0 0 chr9 116748682 116748763 -25522681 + GC_rich Low_complexity Low_complexity 1 81 0 288 0 0 0 chr9 116748771 116748803 -25522641 + (CGG)n Simple_repeat Simple_repeat 3 34 0 31 26 0 0 chr9 116748934 116748972 -25522472 + GC_rich Low_complexity Low_complexity 1 38 0 26 74 0 0 chr9 116749473 116749527 -25521917 + AT_rich Low_complexity Low_complexity 1 54 0 243 61 0 0 chr9 116751875 116751908 -25519536 + (T)n Simple_repeat Simple_repeat 1 33 0 23 0 0 0 chr9 116752277 116752300 -25519144 + AT_rich Low_complexity Low_complexity 1 23 0 358 282 19 19 chr9 116752785 116752888 -25518556 + MIR3 SINE MIR 58 160 -48 472 192 20 20 chr9 116752896 116752995 -25518449 + MER117 DNA MER1_type 6 104 -93 797 226 54 32 chr9 116753098 116753319 -25518125 - MER112 DNA MER1_type -34 226 1 1376 169 49 55 chr9 116753826 116754152 -25517292 - MER33 DNA MER1_type 0 324 1 308 313 47 20 chr9 116754739 116754889 -25516555 + MIR SINE MIR 38 191 -71 239 313 111 0 chr9 116755580 116755724 -25515720 - MARNA DNA Mariner -249 337 178 276 230 62 93 chr9 116756229 116756390 -25515054 + MER104 DNA Tc2 9 164 -16 183 42 0 0 chr9 116756477 116756501 -25514943 + (C)n Simple_repeat Simple_repeat 1 24 0 252 349 56 8 chr9 116756745 116756871 -25514573 + MIR3 SINE MIR 14 145 -63 535 198 33 41 chr9 116757010 116757131 -25514313 - MER117 DNA MER1_type 0 197 78 372 22 0 0 chr9 116757269 116757314 -25514130 + (GA)n Simple_repeat Simple_repeat 2 46 0 332 254 44 61 chr9 116757314 116757428 -25514016 - MIR3 SINE MIR -82 126 15 229 343 19 28 chr9 116757702 116757810 -25513634 + MIR SINE MIR 47 153 -109 943 150 128 116 chr9 116759245 116759565 -25511879 + MER33 DNA MER1_type 1 324 0 337 250 0 0 chr9 116759565 116759645 -25511799 - MIR3 SINE MIR -48 160 81 26 0 0 0 chr9 116760323 116760349 -25511095 + AT_rich Low_complexity Low_complexity 1 26 0 529 308 77 0 chr9 116760441 116760636 -25510808 - MIR SINE MIR -11 251 42 234 215 190 0 chr9 116760649 116760728 -25510716 - MIR SINE MIR -81 181 88 232 293 13 0 chr9 116761212 116761287 -25510157 + MIR3 SINE MIR 91 166 -42 901 232 71 65 chr9 116761544 116762161 -25509283 - MLT1G LTR MaLR 0 577 13 230 328 0 32 chr9 116762185 116762310 -25509134 + (TCTA)n Simple_repeat Simple_repeat 3 123 0 451 257 48 21 chr9 116762428 116762585 -25508859 - MIR SINE MIR -62 146 26 555 270 129 73 chr9 116762677 116763458 -25507986 - L1ME4a LINE L1 0 6121 5297 21 0 0 0 chr9 116763595 116763616 -25507828 + AT_rich Low_complexity Low_complexity 1 21 0 2848 137 94 14 chr9 116763661 116764339 -25507105 + L1MB4 LINE L1 5155 5887 -293 1619 178 50 15 chr9 116764367 116764653 -25506791 + L1MB2 LINE L1 5787 6088 -83 1631 154 103 6 chr9 116764653 116764965 -25506479 + MER2 DNA MER2_type 3 344 0 1619 178 50 15 chr9 116764965 116765015 -25506429 + L1MB2 LINE L1 6088 6135 -36 310 333 93 23 chr9 116765196 116765496 -25505948 - L1ME4a LINE L1 -1099 5047 4727 316 255 128 10 chr9 116765635 116765737 -25505707 - MIR SINE MIR -124 138 25 441 269 46 25 chr9 116766123 116766361 -25505083 - L1ME LINE L1 -301 5820 5578 641 310 94 28 chr9 116767017 116767559 -25503885 - L1ME4a LINE L1 -1542 4604 4027 540 293 94 14 chr9 116767767 116768075 -25503369 - L1ME4a LINE L1 -2200 3946 3616 306 210 123 0 chr9 116768087 116768168 -25503276 + MER117 DNA MER1_type 1 91 -106 412 323 49 38 chr9 116769716 116770060 -25501384 - HAL1b LINE L1 -791 557 210 2117 99 7 14 chr9 116770278 116770587 -25500857 - AluSq SINE Alu 0 307 1 1689 135 52 8 chr9 116770926 116771193 -25500251 - AluJo SINE Alu -5 307 29 3093 166 20 19 chr9 116771632 116771854 -25499590 - L1MB2 LINE L1 -1 6170 5950 1985 123 52 12 chr9 116771854 116772178 -25499266 + MER1B DNA MER1_type 1 337 0 3093 166 20 19 chr9 116772178 116772544 -25498900 - L1MB2 LINE L1 -221 5950 5581 2144 128 0 13 chr9 116772544 116772856 -25498588 - AluSx SINE Alu -4 308 1 375 209 22 101 chr9 116772952 116773091 -25498353 - MIR SINE MIR -61 147 20 537 288 79 19 chr9 116774609 116774824 -25496620 + MIR SINE MIR 16 243 -19 393 195 17 44 chr9 116775211 116775338 -25496106 - L1ME LINE L1 -350 5820 5703 259 322 0 0 chr9 116775415 116775502 -25495942 - L1ME LINE L1 -448 5714 5628 473 275 26 42 chr9 116775887 116776080 -25495364 - L1MC4a LINE L1 -1907 5901 5712 1864 206 126 100 chr9 116776102 116777053 -25494391 - L1MEc LINE L1 -4699 1697 719 1826 181 98 69 chr9 116777053 116777544 -25493900 - MLT1D LTR MaLR 0 505 1 1864 206 126 100 chr9 116777544 116777572 -25493872 - L1MEc LINE L1 -5677 719 693 1421 141 83 0 chr9 116777572 116777813 -25493631 - AluSx SINE Alu -18 294 34 260 224 35 0 chr9 116777815 116777873 -25493571 - L1MEc LINE L1 -5698 698 639 684 207 191 21 chr9 116777880 116778068 -25493376 + MER58A DNA MER1_type 1 220 -4 1459 277 73 10 chr9 116778086 116778580 -25492864 - L1MEc LINE L1 -5829 567 43 202 365 0 0 chr9 116779119 116779193 -25492251 - MIR SINE MIR -77 131 58 1716 274 59 18 chr9 116779244 116779803 -25491641 - MLT1K LTR MaLR -5 583 2 1416 146 65 11 chr9 116780857 116781117 -25490327 + ORSL DNA AcHobo 2 275 0 342 246 14 21 chr9 116781541 116781683 -25489761 + MIR3 SINE MIR 24 164 -44 2322 105 7 0 chr9 116782273 116782577 -25488867 - AluSx SINE Alu -6 306 1 2311 110 0 10 chr9 116783318 116783628 -25487816 - AluSx SINE Alu -5 307 1 318 231 96 23 chr9 116783681 116783820 -25487624 - HAL1b LINE L1 -1 6120 1210 2241 120 0 0 chr9 116783822 116784123 -25487321 - AluSq SINE Alu -12 301 1 720 121 68 0 chr9 116784475 116784607 -25486837 - MER5A DNA MER1_type -38 151 11 207 272 136 0 chr9 116785235 116785360 -25486084 + MIR3 SINE MIR 36 177 -31 392 255 85 14 chr9 116785707 116785848 -25485596 - MIR SINE MIR -58 150 14 422 242 10 0 chr9 116786450 116786549 -25484895 - MER103 DNA DNA -49 117 18 264 196 0 0 chr9 116787606 116787652 -25483792 - L2 LINE L2 -21 3292 3247 189 195 0 0 chr9 116788237 116788278 -25483166 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 458 241 27 0 chr9 116788341 116788453 -25482991 + L2 LINE L2 3199 3313 0 321 109 0 0 chr9 116788555 116788610 -25482834 + (TG)n Simple_repeat Simple_repeat 2 56 0 425 271 76 46 chr9 116789565 116789730 -25481714 + L2 LINE L2 2877 3054 -259 1719 164 0 28 chr9 116789730 116790047 -25481397 - AluJb SINE Alu -3 309 2 425 271 76 46 chr9 116790047 116790143 -25481301 + L2 LINE L2 3054 3146 -167 4273 217 35 30 chr9 116790259 116791325 -25480119 - L1MC4a LINE L1 -1 7807 6737 311 255 28 47 chr9 116791328 116791434 -25480010 + L2 LINE L2 3210 3313 0 252 204 0 19 chr9 116792270 116792324 -25479120 - MIR SINE MIR -62 146 94 2122 128 7 0 chr9 116792900 116793196 -25478248 - AluSx SINE Alu -14 298 1 283 299 0 0 chr9 116793220 116793317 -25478127 + MIR SINE MIR 160 256 -6 281 255 102 10 chr9 116793664 116793776 -25477668 + MIR SINE MIR 43 161 -62 409 209 7 105 chr9 116794388 116794541 -25476903 - L1ME4a LINE L1 0 6121 5984 271 202 143 24 chr9 116794599 116794683 -25476761 - L2 LINE L2 -5 3308 3215 192 111 0 0 chr9 116794956 116794992 -25476452 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 9914 192 113 83 chr9 116794992 116796269 -25475175 - L1MCa LINE L1 -1206 5220 3983 1510 156 0 8 chr9 116796269 116796507 -25474937 - MER46A DNA MER2_type 0 236 1 9914 192 113 83 chr9 116796507 116799231 -25472213 - L1MCa LINE L1 -2443 3983 1037 1929 162 0 0 chr9 116799231 116799536 -25471908 + AluJb SINE Alu 7 311 0 9914 192 113 83 chr9 116799536 116800605 -25470839 - L1MCa LINE L1 -5389 1037 1 4325 214 26 59 chr9 116800595 116801969 -25469475 - L1MCb LINE L1 -4852 1193 1 * 209 171 0 0 chr9 116802174 116802215 -25469229 + MIR SINE MIR 109 149 -113 192 288 30 0 chr9 116803054 116803120 -25468324 + L2 LINE L2 3200 3267 -5 199 326 42 11 chr9 116803817 116803912 -25467532 - L2 LINE L2 -256 3016 2919 1638 129 54 9 chr9 116804081 116804399 -25467045 + MER33 DNA MER1_type 1 324 0 1986 260 240 37 chr9 116804461 116806851 -25464593 - L2 LINE L2 0 3313 442 285 327 145 6 chr9 116806852 116807011 -25464433 + MIR SINE MIR 60 240 -22 1004 168 0 0 chr9 116808449 116808610 -25462834 - FRAM SINE Alu -12 164 4 387 276 92 25 chr9 116808658 116808854 -25462590 + MIR SINE MIR 2 210 -52 256 255 102 0 chr9 116809100 116809198 -25462246 + MIR SINE MIR 128 235 -27 2227 187 96 46 chr9 116809618 116810228 -25461216 - L1MD3 LINE L1 -1 8039 7413 526 303 83 44 chr9 116810520 116810660 -25460784 - L1M4 LINE L1 -1534 4612 4479 1722 158 16 54 chr9 116810660 116810976 -25460468 - AluJo SINE Alu -8 304 1 526 303 83 44 chr9 116810976 116811054 -25460390 - L1M4 LINE L1 -1667 4479 4405 2293 121 0 3 chr9 116811054 116811361 -25460083 - AluSx SINE Alu -3 309 4 526 303 83 44 chr9 116811361 116811758 -25459686 - L1M4 LINE L1 -1741 4405 3972 184 29 0 57 chr9 116811776 116811811 -25459633 + (TTG)n Simple_repeat Simple_repeat 1 33 0 244 276 189 46 chr9 116811854 116813047 -25458397 - L1M4 LINE L1 -2358 3788 2425 484 212 44 0 chr9 116813170 116813283 -25458161 - L1MD3 LINE L1 0 7995 7878 224 289 0 0 chr9 116813505 116813557 -25457887 + CT-rich Low_complexity Low_complexity 2 53 0 543 298 38 23 chr9 116814005 116814267 -25457177 - HAL1 LINE L1 -857 1650 1385 186 204 45 0 chr9 116814674 116814718 -25456726 + MIR3 SINE MIR 109 154 -54 749 218 0 58 chr9 116815984 116816172 -25455272 - Charlie8 DNA MER1_type -2159 258 82 1965 147 7 7 chr9 116816773 116817072 -25454372 - AluSx SINE Alu -13 299 1 1541 184 12 9 chr9 116817099 116817419 -25454025 - MER33 DNA MER1_type 0 324 4 515 344 41 47 chr9 116817561 116818053 -25453391 + L2 LINE L2 2819 3307 -6 374 308 38 38 chr9 116818705 116818838 -25452606 - MIR3 SINE MIR -3 205 73 281 235 184 37 chr9 116819301 116819437 -25452007 - L3 LINE CR1 -18 1559 1404 455 302 186 0 chr9 116819723 116819895 -25451549 + MIR SINE MIR 28 231 -31 199 226 75 19 chr9 116819972 116820025 -25451419 + L2 LINE L2 3182 3237 -35 212 185 49 123 chr9 116821142 116821223 -25450221 - L2 LINE L2 -3 3310 3236 190 278 83 53 chr9 116821437 116821570 -25449874 - MIR3 SINE MIR -42 166 30 318 259 185 7 chr9 116821970 116822105 -25449339 - L3 LINE CR1 -87 1490 1332 236 320 72 13 chr9 116823481 116823634 -25447810 - L2 LINE L2 -549 2765 2604 445 309 51 11 chr9 116823671 116823849 -25447595 + MIR SINE MIR 76 260 -2 226 238 0 0 chr9 116823891 116823954 -25447490 + L1MC4 LINE L1 6640 6702 -1340 300 300 25 0 chr9 116823997 116824077 -25447367 + L1MC4 LINE L1 6614 6695 -1347 235 182 0 18 chr9 116824079 116824134 -25447310 + LTR66 LTR ERVL 394 447 -163 190 291 39 58 chr9 116824923 116825026 -25446418 - L3 LINE CR1 -149 1428 1328 560 280 19 11 chr9 116825050 116825217 -25446227 + MIR SINE MIR 2 175 -33 235 299 102 22 chr9 116825378 116825515 -25445929 + MIR SINE MIR 107 254 -8 212 186 279 12 chr9 116826067 116826153 -25445291 + MIR SINE MIR 98 206 -56 959 307 63 19 chr9 116827173 116827648 -25443796 + LTR33A LTR ERVL 7 502 -21 205 115 19 173 chr9 116828417 116828449 -25442995 + MIR3 SINE MIR 117 140 -68 2231 88 3 0 chr9 116828449 116828734 -25442710 + AluSq SINE Alu 28 313 0 205 115 19 173 chr9 116828734 116828753 -25442691 + MIR3 SINE MIR 140 160 -48 554 237 0 0 chr9 116828791 116828905 -25442539 - MER117 DNA MER1_type -47 150 37 941 293 16 4 chr9 116829362 116829611 -25441833 - MIR SINE MIR -4 258 7 388 273 133 14 chr9 116829768 116829911 -25441533 - MIR SINE MIR -71 191 32 331 248 155 0 chr9 116829910 116830039 -25441405 - MIR3 SINE MIR -18 190 42 * 446 323 95 4 chr9 116830689 116830921 -25440523 + MIR SINE MIR 2 254 -8 509 228 74 0 chr9 116831004 116831134 -25440310 - MIR SINE MIR -38 224 85 348 179 36 24 chr9 116831417 116831501 -25439943 + L1MD3 LINE L1 7907 7991 -4 2456 60 9 25 chr9 116831501 116831816 -25439628 + AluSp SINE Alu 1 310 -3 2461 90 0 3 chr9 116832093 116832403 -25439041 - AluSq SINE Alu -4 309 1 221 235 10 112 chr9 116833798 116833896 -25437548 + L2 LINE L2 3226 3313 0 182 323 50 81 chr9 116833897 116833996 -25437448 + L2 LINE L2 3174 3269 -3 298 290 87 7 chr9 116834103 116834241 -25437203 + Tigger8 DNA MER2_type 432 580 -86 323 334 17 54 chr9 116834453 116834640 -25436804 + MIR SINE MIR 30 211 -51 1636 253 147 39 chr9 116834676 116835493 -25435951 + L2 LINE L2 2416 3313 0 309 261 0 0 chr9 116836067 116836132 -25435312 + L2 LINE L2 3248 3312 -1 269 290 14 0 chr9 116836251 116836320 -25435124 - L2 LINE L2 -8 3264 3195 198 0 0 0 chr9 116837245 116837267 -25434177 + (T)n Simple_repeat Simple_repeat 1 22 0 194 345 60 0 chr9 116838156 116838240 -25433204 - MIR SINE MIR -59 149 61 193 300 100 56 chr9 116838478 116838568 -25432876 + MIR SINE MIR 37 130 -78 601 264 52 82 chr9 116838634 116838865 -25432579 - MIR SINE MIR -21 241 18 307 179 39 13 chr9 116838923 116839001 -25432443 + MER116 DNA Mariner 1 80 0 1026 246 34 44 chr9 116839304 116839715 -25431729 + Tigger8 DNA MER2_type 174 580 -86 182 300 83 8 chr9 116840088 116840208 -25431236 + MIR SINE MIR 73 201 -61 786 195 110 72 chr9 116840537 116840829 -25430615 + MER46C DNA MER2_type 1 303 -35 289 255 180 65 chr9 116842013 116842213 -25429231 - MLT1K LTR MaLR -345 243 21 439 259 24 42 chr9 116842553 116842719 -25428725 + MER103 DNA DNA 3 165 -1 308 340 43 25 chr9 116842767 116842929 -25428515 - L2 LINE L2 -543 2771 2607 389 274 11 0 chr9 116842943 116843038 -25428406 - MER58B DNA MER1_type -35 306 211 601 312 106 28 chr9 116843084 116843443 -25428001 + L2 LINE L2 2920 3306 -7 390 317 98 6 chr9 116843702 116843866 -25427578 - MIR3 SINE MIR -15 193 15 207 254 182 27 chr9 116843987 116844097 -25427347 - L2 LINE L2 0 3272 3146 276 268 80 22 chr9 116844196 116844334 -25427110 + MER117 DNA MER1_type 52 197 0 712 256 47 105 chr9 116844471 116844546 -25426898 - MIR SINE MIR 0 262 184 1905 164 0 3 chr9 116844546 116844839 -25426605 - AluJb SINE Alu -16 296 5 712 256 47 105 chr9 116844839 116845040 -25426404 - MIR SINE MIR -78 184 2 2199 110 0 32 chr9 116845279 116845587 -25425857 + AluSx SINE Alu 1 298 -14 378 163 58 23 chr9 116846298 116846384 -25425060 - MIR3 SINE MIR -21 187 99 1157 231 232 6 chr9 116846471 116846996 -25424448 - L2 LINE L2 0 3313 2682 908 274 14 11 chr9 116847305 116847546 -25423898 + MIR SINE MIR 25 262 0 252 275 235 20 chr9 116847664 116847813 -25423631 - MIR SINE MIR -13 249 69 1282 176 34 21 chr9 116848007 116848240 -25423204 + MER46A DNA MER2_type 1 236 0 192 345 35 0 chr9 116851014 116851101 -25420343 - L2 LINE L2 -24 3289 3200 377 336 24 8 chr9 116851185 116851310 -25420134 + MIR SINE MIR 13 139 -123 335 337 111 6 chr9 116852181 116852362 -25419082 - L2 LINE L2 -1 3312 3113 * 954 227 60 211 chr9 116852348 116852955 -25418489 - L2 LINE L2 -557 2757 2246 741 144 17 0 chr9 116852955 116853073 -25418371 + FLAM_A SINE Alu 23 142 0 954 227 60 211 chr9 116853073 116853425 -25418019 - L2 LINE L2 -1068 2246 1843 225 322 136 8 chr9 116853883 116854001 -25417443 - MIR3 SINE MIR -28 180 48 183 326 82 31 chr9 116854236 116854334 -25417110 + MIR SINE MIR 29 131 -77 * 389 238 12 0 chr9 116854321 116854401 -25417043 - L2 LINE L2 -23 3249 3169 1121 227 148 35 chr9 116854687 116855141 -25416303 - MLT1D LTR MaLR 0 505 1 23 54 0 0 chr9 116855709 116855746 -25415698 + AT_rich Low_complexity Low_complexity 1 37 0 248 326 45 11 chr9 116856217 116856306 -25415138 + MIR3 SINE MIR 9 100 -108 233 278 98 68 chr9 116856469 116856602 -25414842 - L2 LINE L2 -6 3307 3171 196 226 54 65 chr9 116856743 116856836 -25414608 - L2 LINE L2 -166 3106 3015 297 306 36 18 chr9 116856910 116857021 -25414423 - MIR SINE MIR -62 146 34 300 254 0 14 chr9 116857417 116857488 -25413956 - MIR SINE MIR -188 74 5 461 349 58 11 chr9 116857577 116857766 -25413678 - MIR SINE MIR -42 220 23 323 338 91 18 chr9 116857741 116857960 -25413484 - L3 LINE CR1 -47 1530 1296 * 652 293 58 5 chr9 116858223 116858431 -25413013 + MIR SINE MIR 39 257 -5 459 249 98 55 chr9 116858639 116858847 -25412597 - MIR SINE MIR -35 227 5 1177 215 68 12 chr9 116858913 116859239 -25412205 - MLT1A2 LTR MaLR -30 344 1 436 330 23 17 chr9 116859331 116859507 -25411937 - MIR3 SINE MIR -16 192 16 250 296 78 9 chr9 116859766 116859881 -25411563 + MIR SINE MIR 30 152 -56 381 240 67 84 chr9 116860133 116860210 -25411234 + MER5A DNA MER1_type 9 86 -103 686 168 8 38 chr9 116860210 116860341 -25411103 + FLAM_A SINE Alu 5 131 -2 381 240 67 84 chr9 116860341 116860442 -25411002 + MER5A DNA MER1_type 86 184 -5 269 213 33 16 chr9 116860530 116860591 -25410853 + MIR3 SINE MIR 93 154 -54 736 258 68 65 chr9 116861642 116861979 -25409465 - MER102b DNA MER1_type -3 338 1 424 299 183 15 chr9 116862230 116862697 -25408747 + L2 LINE L2 2507 3057 -215 967 274 56 41 chr9 116862932 116863322 -25408122 - MLT1I LTR MaLR -7 402 7 188 274 0 0 chr9 116863726 116863777 -25407667 + MIR SINE MIR 95 145 -117 289 292 264 7 chr9 116863874 116864018 -25407426 + MIR SINE MIR 48 228 -34 260 279 205 6 chr9 116864594 116864755 -25406689 + MER117 DNA MER1_type 5 197 0 303 296 12 0 chr9 116864755 116864836 -25406608 - MIR SINE MIR -58 150 69 461 277 61 20 chr9 116865777 116865925 -25405519 - MER117 DNA MER1_type -42 155 2 302 265 97 66 chr9 116866362 116866558 -25404886 + L3 LINE CR1 1328 1529 -48 4308 171 36 39 chr9 116867278 116868281 -25403163 - Charlie2 DNA MER1_type -4 2858 1859 742 287 71 32 chr9 116868284 116868594 -25402850 - Charlie2 DNA MER1_type -2456 326 5 1971 147 40 3 chr9 116869549 116869891 -25401553 - AluJo SINE Alu 0 353 1 386 226 36 0 chr9 116869984 116870068 -25401376 + MIR SINE MIR 108 194 -68 185 304 13 51 chr9 116870101 116870180 -25401264 + MIR SINE MIR 71 146 -62 270 205 64 13 chr9 116871153 116871231 -25400213 + MER103 DNA DNA 2 83 -83 280 329 126 19 chr9 116871375 116871582 -25399862 - MIR SINE MIR 0 262 34 209 250 120 127 chr9 116872084 116872376 -25399068 + L2 LINE L2 2974 3263 -9 219 291 0 0 chr9 116872784 116872839 -25398605 - MIR SINE MIR -67 141 87 1427 108 80 0 chr9 116872873 116873086 -25398358 - MER30 DNA MER1_type 0 230 1 181 229 160 23 chr9 116873259 116873388 -25398056 - MIR SINE MIR -51 211 34 203 308 94 0 chr9 116873402 116873519 -25397925 - MER5A DNA MER1_type -23 166 39 499 281 49 18 chr9 116873915 116874079 -25397365 - MIR SINE MIR -88 174 6 577 181 13 58 chr9 116874231 116874386 -25397058 - MIR3 SINE MIR -58 150 3 1372 233 144 11 chr9 116875849 116876299 -25395145 + L1ME3A LINE L1 5627 6136 -34 800 209 144 30 chr9 116876303 116876504 -25394940 - MER58A DNA MER1_type 0 224 1 207 239 57 45 chr9 116877227 116877315 -25394129 - MIR3 SINE MIR -12 196 108 494 288 50 19 chr9 116877557 116877717 -25393727 - MIR SINE MIR -71 191 27 1382 273 67 53 chr9 116879061 116879611 -25391833 - MLT1E LTR MaLR -2 591 34 274 198 69 79 chr9 116879613 116879714 -25391730 + MIR SINE MIR 48 147 -61 339 164 15 0 chr9 116880134 116880201 -25391243 - MER116 DNA Mariner 0 80 13 189 206 44 73 chr9 116880351 116880419 -25391025 - MIR3 SINE MIR -1 207 142 658 298 55 13 chr9 116881224 116881462 -25389982 + MIR SINE MIR 2 249 -13 201 349 41 58 chr9 116881580 116881752 -25389692 - L2 LINE L2 -30 3242 3074 268 310 123 26 chr9 116881849 116882004 -25389440 - L2 LINE L2 -498 2816 2647 236 215 15 62 chr9 116882420 116882485 -25388959 + MIR SINE MIR 186 247 -15 2249 106 30 3 chr9 116882522 116882823 -25388621 + AluSx SINE Alu 1 309 -3 2344 87 3 0 chr9 116882919 116883206 -25388238 + AluSc SINE Alu 1 288 -21 226 313 0 30 chr9 116883358 116883425 -25388019 + MIR SINE MIR 18 82 -180 575 326 30 26 chr9 116883568 116883801 -25387643 + MIR SINE MIR 17 250 -12 1494 219 45 34 chr9 116884684 116885041 -25386403 - MLT1A2 LTR MaLR -13 361 1 355 310 102 30 chr9 116885341 116885745 -25385699 + HAL1b LINE L1 208 1711 -796 2623 64 0 3 chr9 116885914 116886225 -25385219 - AluY SINE Alu -1 310 1 802 205 84 0 chr9 116886296 116886462 -25384982 + MER5A DNA MER1_type 10 189 0 351 284 42 47 chr9 116886867 116887057 -25384387 + L2 LINE L2 3082 3270 -43 1044 201 0 0 chr9 116887191 116887370 -25384074 - MER5A DNA MER1_type -10 179 1 22 0 0 0 chr9 116887555 116887577 -25383867 + AT_rich Low_complexity Low_complexity 1 22 0 284 290 84 70 chr9 116887825 116888381 -25383063 + L1ME4a LINE L1 5333 5896 -225 183 172 0 0 chr9 116888869 116888898 -25382546 - L2 LINE L2 -34 3238 3210 * 1034 195 41 0 chr9 116888872 116889067 -25382377 - MIR SINE MIR -31 231 29 286 300 113 31 chr9 116889755 116889915 -25381529 + MIR3 SINE MIR 21 193 -15 276 246 40 32 chr9 116890426 116890552 -25380892 + MIR SINE MIR 14 140 -122 288 281 42 10 chr9 116891013 116891109 -25380335 - MIR SINE MIR -161 101 3 240 220 0 0 chr9 116891331 116891381 -25380063 + L3b LINE CR1 1331 1380 -203 4306 235 44 13 chr9 116891564 116893579 -25377865 - L1ME2 LINE L1 -230 6003 3920 278 164 45 0 chr9 116893744 116893811 -25377633 - L1MA9 LINE L1 -44 6268 6199 2301 198 29 54 chr9 116894067 116894714 -25376730 - L1ME1 LINE L1 -5 6161 5531 3141 268 72 29 chr9 116894716 116897563 -25373881 - L1ME2 LINE L1 -2449 3766 150 243 315 24 71 chr9 116898094 116898221 -25373223 + MIR SINE MIR 16 136 -72 485 313 127 47 chr9 116898361 116898809 -25372635 - L2 LINE L2 0 3313 2830 199 227 13 67 chr9 116900030 116900105 -25371339 + MIR SINE MIR 67 137 -71 448 247 32 51 chr9 116901561 116901719 -25369725 + MIR3 SINE MIR 23 177 -31 552 261 128 5 chr9 116901787 116901982 -25369462 + Charlie8 DNA MER1_type 62 280 -2137 245 271 29 0 chr9 116902039 116902109 -25369335 + Charlie8 DNA MER1_type 2344 2415 -2 482 242 46 46 chr9 116903567 116903720 -25367724 + MIR SINE MIR 98 250 -12 250 293 0 0 chr9 116904153 116904228 -25367216 + MER103 DNA DNA 16 90 -76 1980 92 92 0 chr9 116905624 116905886 -25365558 + AluSx SINE Alu 1 286 -26 288 0 0 0 chr9 116905886 116905918 -25365526 + (GA)n Simple_repeat Simple_repeat 2 33 0 294 258 158 8 chr9 116906480 116906600 -25364844 + MIR SINE MIR 56 193 -69 386 232 62 18 chr9 116906754 116906866 -25364578 - MIR3 SINE MIR -88 120 4 195 42 0 0 chr9 116906927 116906951 -25364493 + (CTG)n Simple_repeat Simple_repeat 1 24 0 778 256 35 17 chr9 116906953 116907183 -25364261 - MIR SINE MIR -6 256 23 233 278 0 10 chr9 116908046 116908143 -25363301 + CT-rich Low_complexity Low_complexity 3 98 0 192 125 0 0 chr9 116908354 116908386 -25363058 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 298 159 62 142 chr9 116908457 116908570 -25362874 + L2 LINE L2 3202 3305 -8 269 221 26 39 chr9 116909111 116909188 -25362256 - L2 LINE L2 -212 3060 2985 846 243 16 16 chr9 116909342 116909531 -25361913 - MER5A DNA MER1_type 0 189 1 471 299 61 0 chr9 116909636 116909800 -25361644 - MLT1J2 LTR MaLR -33 417 244 262 363 38 0 chr9 116910157 116910237 -25361207 - L3 LINE CR1 -509 1068 986 213 306 0 0 chr9 116910246 116910295 -25361149 - L2 LINE L2 0 3313 3265 520 267 80 28 chr9 116911193 116911369 -25360075 - MIR SINE MIR -4 258 74 874 286 12 20 chr9 116911370 116911618 -25359826 - MIR SINE MIR 0 262 17 225 315 49 56 chr9 116911649 116911792 -25359652 - MIR3 SINE MIR -13 195 54 2221 128 0 13 chr9 116911833 116912146 -25359298 - AluSx SINE Alu -2 310 2 284 302 93 14 chr9 116912172 116912311 -25359133 + MIR SINE MIR 98 247 -15 266 309 99 0 chr9 116912702 116912783 -25358661 - MIR SINE MIR -77 131 43 8038 44 5 10 chr9 116912835 116914601 -25356843 - L1PA5 LINE L1 0 6154 4386 300 300 0 10 chr9 116914658 116914758 -25356686 - L1ME4a LINE L1 -57 6064 5966 3160 210 23 48 chr9 116914768 116914887 -25356557 - L1ME1 LINE L1 -6 6160 6040 791 139 0 58 chr9 116914887 116915024 -25356420 + FLAM_C SINE Alu 1 129 -4 3160 210 23 48 chr9 116915024 116915046 -25356398 - L1ME1 LINE L1 -126 6040 6019 1895 159 3 3 chr9 116915046 116915341 -25356103 + AluJo SINE Alu 4 298 -14 3160 210 23 48 chr9 116915341 116916013 -25355431 - L1ME1 LINE L1 -147 6019 5366 298 67 0 22 chr9 116916014 116916059 -25355385 + L1M LINE L1 5322 5365 -809 * 4955 163 7 24 chr9 116916055 116917525 -25353919 - L1P5 LINE L1 -506 5645 4204 4404 176 39 57 chr9 116917525 116918741 -25352703 - L1ME1 LINE L1 -814 5332 4121 1882 134 65 3 chr9 116918741 116919048 -25352396 + MER7A DNA MER2_type 1 324 -22 1725 171 17 22 chr9 116919061 116919423 -25352021 - L1ME1 LINE L1 -2028 4118 3759 337 310 38 4 chr9 116919728 116919868 -25351576 + MIR SINE MIR 22 160 -56 335 288 133 44 chr9 116920094 116920320 -25351124 - MIR SINE MIR -12 250 5 309 311 0 34 chr9 116920663 116920782 -25350662 - MIR SINE MIR -74 134 20 219 302 0 0 chr9 116920828 116920881 -25350563 + L3 LINE CR1 1494 1546 -31 346 294 0 0 chr9 116920900 116920992 -25350452 - MER117 DNA MER1_type -8 189 98 270 0 0 0 chr9 116922986 116923016 -25348428 + (CA)n Simple_repeat Simple_repeat 2 31 0 234 176 0 0 chr9 116928250 116928301 -25343143 + A-rich Low_complexity Low_complexity 1 51 0 291 241 241 0 chr9 116930734 116930867 -25340577 - Charlie8 DNA MER1_type -2195 222 58 1956 131 0 16 chr9 116930870 116931176 -25340268 + AluJb SINE Alu 1 301 -11 192 222 263 15 chr9 116933131 116933266 -25338178 - MIR SINE MIR -63 145 1 297 241 60 35 chr9 116933689 116933805 -25337639 - MIR3 SINE MIR -2 206 88 401 311 201 14 chr9 116934152 116934361 -25337083 - MIR SINE MIR -9 253 6 268 311 163 34 chr9 116934456 116934806 -25336638 + L2 LINE L2 2874 3268 -4 488 306 58 32 chr9 116936553 116936896 -25334548 + HAL1b LINE L1 390 741 -607 22 0 0 0 chr9 116936935 116936957 -25334487 + AT_rich Low_complexity Low_complexity 1 22 0 2508 149 57 5 chr9 116937687 116938124 -25333320 + MLT1C LTR MaLR 1 460 -7 204 40 0 0 chr9 116938172 116938197 -25333247 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 1012 301 112 3 chr9 116938471 116938810 -25332634 + LTR16A LTR ERVL 1 376 -74 324 0 0 0 chr9 116938918 116938954 -25332490 + (TG)n Simple_repeat Simple_repeat 2 37 0 682 165 0 0 chr9 116938954 116939057 -25332387 - FLAM_C SINE Alu -26 117 15 1990 268 82 74 chr9 116939262 116939475 -25331969 + HAL1b LINE L1 56 266 -1082 2027 100 4 4 chr9 116939475 116939779 -25331665 - AluSc SINE Alu 0 304 1 1990 268 82 74 chr9 116939779 116939799 -25331645 + HAL1b LINE L1 266 284 -1064 1503 180 18 4 chr9 116939799 116939949 -25331495 - AluJo SINE Alu -30 282 125 189 0 0 0 chr9 116939949 116939970 -25331474 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1503 180 18 4 chr9 116939970 116940097 -25331347 - AluJo SINE Alu -187 125 1 1990 268 82 74 chr9 116940097 116940861 -25330583 + HAL1b LINE L1 284 1071 -277 2050 122 0 20 chr9 116940861 116941164 -25330280 + AluSx SINE Alu 3 299 -13 1990 268 82 74 chr9 116941164 116941438 -25330006 + HAL1b LINE L1 1071 1341 -7 320 192 39 26 chr9 116941582 116941660 -25329784 - L1MCa LINE L1 -4354 2072 1994 375 275 130 53 chr9 116941904 116942111 -25329333 - MIR SINE MIR -15 247 25 426 270 184 0 chr9 116942376 116942561 -25328883 - MIR SINE MIR -3 259 41 330 185 15 0 chr9 116942561 116942626 -25328818 + MER52A LTR ERV1 1 66 -1689 7558 182 118 24 chr9 116943416 116944979 -25326465 + MER52A LTR ERV1 46 1755 0 247 252 0 0 chr9 116945087 116945146 -25326298 + MIR SINE MIR 43 102 -106 1771 68 0 0 chr9 116945621 116945841 -25325603 - AluY SINE Alu -16 295 76 1904 161 0 3 chr9 116945864 116946169 -25325275 - AluJo SINE Alu -8 304 1 197 179 0 18 chr9 116946617 116946673 -25324771 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 284 343 17 6 chr9 116946723 116946898 -25324546 + (TCCA)n Simple_repeat Simple_repeat 1 177 0 311 113 19 0 chr9 116947146 116947199 -25324245 + GA-rich Low_complexity Low_complexity 2 55 0 189 215 308 0 chr9 116947568 116947633 -25323811 - MIR SINE MIR -70 192 108 492 204 39 0 chr9 116947768 116947871 -25323573 + MIR SINE MIR 109 215 -47 801 332 96 36 chr9 116947916 116948900 -25322544 - L2 LINE L2 -4 3268 2221 231 88 0 0 chr9 116949188 116949222 -25322222 + (TCC)n Simple_repeat Simple_repeat 2 35 0 214 211 0 53 chr9 116949457 116949514 -25321930 - L3 LINE CR1 -125 1452 1399 197 313 83 0 chr9 116949761 116949857 -25321587 - MIR SINE MIR -60 148 45 440 269 14 22 chr9 116950942 116951126 -25320318 - MIR SINE MIR -63 145 8 604 293 31 26 chr9 116951182 116951373 -25320071 - MIR SINE MIR -12 250 59 816 193 148 0 chr9 116951378 116951580 -25319864 + MIR SINE MIR 14 245 -17 970 273 90 44 chr9 116951583 116951972 -25319472 + MLT1C LTR MaLR 1 407 -60 2198 114 0 0 chr9 116952016 116952323 -25319121 - AluSq SINE Alu -6 307 1 317 263 83 23 chr9 116953736 116953869 -25317575 - MIR3 SINE MIR -62 146 6 234 340 70 42 chr9 116954109 116954350 -25317094 - L2 LINE L2 -337 2977 2730 2112 87 3 3 chr9 116955431 116955718 -25315726 + AluSq SINE Alu 12 298 -15 1126 102 11 11 chr9 116955727 116955903 -25315541 + L1PA11 LINE L1 5997 6172 -2 207 236 22 90 chr9 116955909 116955998 -25315446 - MIR SINE MIR -108 154 72 208 311 16 0 chr9 116956211 116956272 -25315172 + L2 LINE L2 3246 3307 -6 458 310 83 35 chr9 116956541 116956770 -25314674 + MIR SINE MIR 2 241 -21 695 198 9 101 chr9 116957473 116957690 -25313754 - MIR SINE MIR 0 262 66 812 256 63 5 chr9 116958090 116958313 -25313131 + MIR SINE MIR 24 259 -3 188 350 36 36 chr9 116958331 116958471 -25312973 + L2 LINE L2 3164 3303 -10 222 288 50 0 chr9 116958585 116958665 -25312779 - MIR SINE MIR -103 105 22 2814 96 0 6 chr9 116959721 116960087 -25311357 - THE1B LTR MaLR 0 364 1 402 291 184 15 chr9 116960531 116960737 -25310707 + L2 LINE L2 3002 3242 -71 233 263 0 79 chr9 116960803 116960879 -25310565 - MIR SINE MIR 0 262 193 304 363 16 0 chr9 116960983 116961107 -25310337 - MIR SINE MIR -55 207 82 226 357 84 19 chr9 116961854 116962067 -25309377 + L2 LINE L2 2615 2841 -473 206 215 110 105 chr9 116962092 116962292 -25309152 + L2 LINE L2 2965 3165 -107 1417 148 30 0 chr9 116962381 116962611 -25308833 - AluJo SINE Alu -55 257 21 216 97 0 0 chr9 116962634 116962665 -25308779 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2171 127 143 13 chr9 116962800 116963179 -25308265 + MSTA LTR MaLR 1 428 0 234 327 84 19 chr9 116963264 116963371 -25308073 - MIR SINE MIR -61 147 34 2012 85 0 43 chr9 116963556 116963862 -25307582 + AluSc SINE Alu 13 306 0 205 250 47 16 chr9 116964142 116964206 -25307238 - MIR SINE MIR -62 146 81 261 307 55 16 chr9 116964552 116964679 -25306765 - MIR3 SINE MIR -7 201 70 287 358 58 7 chr9 116965181 116965318 -25306126 + L2 LINE L2 3170 3313 0 266 278 0 0 chr9 116965318 116965390 -25306054 + (TGAA)n Simple_repeat Simple_repeat 2 73 0 900 255 13 22 chr9 116965940 116966171 -25305273 - MIR SINE MIR -6 256 28 634 269 38 6 chr9 116966842 116967002 -25304442 + MER91A DNA MER1_type 1 165 -31 204 338 14 36 chr9 116967156 116967295 -25304149 + (CCCTAA)n Simple_repeat Simple_repeat 6 141 0 207 348 0 0 chr9 116967724 116967793 -25303651 - MIR SINE MIR -148 114 46 307 260 115 0 chr9 116967841 116967945 -25303499 + L2 LINE L2 3133 3248 -24 234 296 92 0 chr9 116968083 116968181 -25303263 + MIR3 SINE MIR 97 203 -5 227 289 105 46 chr9 116968996 116969148 -25302296 - L2 LINE L2 -530 2784 2624 279 259 166 50 chr9 116970148 116970287 -25301157 - MIR SINE MIR 0 262 108 211 269 97 0 chr9 116970316 116970409 -25301035 + MIR3 SINE MIR 92 193 -15 29 0 0 0 chr9 116970447 116970476 -25300968 + GC_rich Low_complexity Low_complexity 1 29 0 268 315 14 27 chr9 116970801 116970947 -25300497 + (CGGGG)n Simple_repeat Simple_repeat 4 147 0 298 290 94 49 chr9 116972508 116972732 -25298712 - L2 LINE L2 -404 2910 2677 288 336 0 25 chr9 116972845 116972967 -25298477 + L3 LINE CR1 1383 1501 -76 189 259 205 18 chr9 116973005 116973117 -25298327 + MIR SINE MIR 60 192 -70 244 167 21 0 chr9 116973174 116973222 -25298222 + L3 LINE CR1 1528 1576 -1 198 282 27 64 chr9 116973253 116973363 -25298081 - MIR SINE MIR -109 153 48 2026 143 0 14 chr9 116973565 116973886 -25297558 - AluSq SINE Alu 0 317 1 1352 258 33 51 chr9 116974081 116974566 -25296878 - L2 LINE L2 -3 3310 2838 2246 129 3 0 chr9 116974566 116974869 -25296575 + AluSg SINE Alu 1 304 -6 1352 258 33 51 chr9 116974869 116974925 -25296519 - L2 LINE L2 -475 2838 2782 6678 252 103 36 chr9 116974926 116975343 -25296101 + L1MEc LINE L1 1380 1768 -4471 2193 126 0 0 chr9 116975343 116975637 -25295807 + AluSx SINE Alu 1 294 -18 6678 252 103 36 chr9 116975637 116975968 -25295476 + L1MEc LINE L1 1768 2076 -4163 2174 136 10 0 chr9 116975968 116976276 -25295168 + AluJb SINE Alu 2 312 0 6678 252 103 36 chr9 116976276 116979657 -25291787 + L1MEc LINE L1 2076 5768 -471 1534 167 120 0 chr9 116979657 116979932 -25291512 + AluJb SINE Alu 1 308 -4 6678 252 103 36 chr9 116979932 116979959 -25291485 + L1MEc LINE L1 5768 5792 -447 197 160 0 40 chr9 116980002 116980052 -25291392 + (CACCAT)n Simple_repeat Simple_repeat 3 50 0 241 319 0 0 chr9 116980115 116980184 -25291260 + (CCA)n Simple_repeat Simple_repeat 3 71 0 214 328 85 55 chr9 116981002 116981237 -25290207 + L2 LINE L2 3030 3271 -1 2184 139 0 3 chr9 116982182 116982483 -25288961 - AluSx SINE Alu 0 312 13 180 322 17 0 chr9 116982511 116982570 -25288874 + L2 LINE L2 3207 3266 -6 405 167 112 114 chr9 116982908 116983134 -25288310 - MIR SINE MIR -6 256 11 260 174 278 9 chr9 116983301 116983416 -25288028 - MER5B DNA MER1_type 0 178 33 936 117 23 6 chr9 116983416 116983587 -25287857 + CT-rich Low_complexity Low_complexity 3 176 0 2120 115 0 4 chr9 116983587 116983866 -25287578 - AluSg SINE Alu -32 278 1 506 67 13 0 chr9 116983866 116983941 -25287503 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 2104 133 7 13 chr9 116983947 116984249 -25287195 - AluSx SINE Alu 0 312 13 254 135 0 0 chr9 116984295 116984332 -25287112 - AluSx SINE Alu -271 37 1 222 184 0 0 chr9 116984334 116984372 -25287072 - MER5B DNA MER1_type -136 42 5 2038 149 0 0 chr9 116984466 116984754 -25286690 - AluJb SINE Alu -15 297 10 197 281 47 117 chr9 116985043 116985214 -25286230 + L2 LINE L2 3021 3179 -93 330 227 34 42 chr9 116985344 116985463 -25285981 - L2 LINE L2 -212 3060 2943 396 281 12 12 chr9 116986274 116986438 -25285006 + (CTA)n Simple_repeat Simple_repeat 1 164 0 1667 172 42 22 chr9 116986438 116986793 -25284651 + THE1C LTR MaLR 14 375 0 206 315 24 16 chr9 116986803 116986930 -25284514 + (CTA)n Simple_repeat Simple_repeat 1 128 0 241 86 0 0 chr9 116987036 116987071 -25284373 - MER4E LTR ERV1 0 766 732 26 50 0 0 chr9 116987071 116987111 -25284333 + AT_rich Low_complexity Low_complexity 1 40 0 3353 107 15 62 chr9 116987111 116987711 -25283733 - MER4B LTR ERV1 -38 572 1 347 328 3 0 chr9 116987712 116987824 -25283620 - MIR SINE MIR -59 149 39 186 231 0 0 chr9 116987985 116988024 -25283420 + L2 LINE L2 3271 3309 -4 254 346 60 0 chr9 116988248 116988381 -25283063 - MIR SINE MIR -71 191 51 570 308 168 21 chr9 116989010 116989254 -25282190 + L2 LINE L2 2878 3085 -228 2223 89 0 11 chr9 116989254 116989577 -25281867 - AluSc SINE Alu 0 320 1 570 308 168 21 chr9 116989577 116989711 -25281733 + L2 LINE L2 3085 3313 0 196 187 40 27 chr9 116989914 116989989 -25281455 - L3 LINE CR1 -78 1499 1424 281 206 0 0 chr9 116990389 116990462 -25280982 - MER5A DNA MER1_type -113 76 4 181 301 48 12 chr9 116990471 116990554 -25280890 - MIR SINE MIR -63 145 60 319 207 24 49 chr9 116991493 116991575 -25279869 - MIR SINE MIR -88 120 41 389 279 18 9 chr9 116991689 116991800 -25279644 + MIR3 SINE MIR 46 157 -51 418 263 27 49 chr9 116992425 116992603 -25278841 + MIR SINE MIR 4 176 -32 379 250 22 11 chr9 116992941 116993033 -25278411 - L2 LINE L2 -1 3271 3179 732 163 34 0 chr9 116993033 116993365 -25278079 + (TGGA)n Simple_repeat Simple_repeat 1 343 0 294 333 72 9 chr9 116993393 116993504 -25277940 + L2 LINE L2 3193 3310 -3 842 209 60 38 chr9 116993511 116993746 -25277698 + MIR SINE MIR 15 254 -8 197 232 12 61 chr9 116994794 116994876 -25276568 - MIR SINE MIR -72 136 59 431 256 16 16 chr9 116995124 116995249 -25276195 + MIR SINE MIR 61 185 -77 207 130 56 0 chr9 116996728 116996782 -25274662 + GA-rich Low_complexity Low_complexity 2 58 0 247 256 23 23 chr9 116996784 116996870 -25274574 + (CAGAGA)n Simple_repeat Simple_repeat 2 87 0 * 323 344 6 6 chr9 116996823 116997003 -25274441 + GA-rich Low_complexity Low_complexity 1 180 0 197 278 26 78 chr9 116997373 116997488 -25273956 + MIR3 SINE MIR 14 122 -86 239 274 0 0 chr9 116998054 116998105 -25273339 - MIR SINE MIR -181 81 31 651 256 121 10 chr9 116998333 116998532 -25272912 + MIR SINE MIR 23 243 -19 519 225 101 0 chr9 116998577 116998706 -25272738 - MIR SINE MIR -74 188 47 527 200 19 19 chr9 116998766 116998926 -25272518 + CT-rich Low_complexity Low_complexity 1 160 0 235 242 16 0 chr9 116998926 116998988 -25272456 - L2 LINE L2 -2 3311 3249 297 244 168 0 chr9 116999690 116999821 -25271623 + L2 LINE L2 2921 3073 -240 2433 226 26 12 chr9 116999825 117000177 -25271267 + MLT1G LTR MaLR 3 367 -223 1733 217 68 56 chr9 117000177 117000674 -25270770 - MLT1D LTR MaLR -2 503 1 2433 226 26 12 chr9 117000674 117000887 -25270557 + MLT1G LTR MaLR 367 576 -14 344 219 104 49 chr9 117000931 117001055 -25270389 + L2 LINE L2 3103 3219 -94 2001 150 16 3 chr9 117001055 117001361 -25270083 - AluSx SINE Alu -2 310 1 344 219 104 49 chr9 117001361 117001387 -25270057 + L2 LINE L2 3219 3242 -71 2012 124 157 5 chr9 117001387 117001757 -25269687 - MSTA LTR MaLR -2 426 1 344 219 104 49 chr9 117001757 117001788 -25269656 + L2 LINE L2 3242 3295 -18 357 291 17 8 chr9 117001794 117001911 -25269533 + L2 LINE L2 3139 3256 -16 1119 217 105 117 chr9 117002183 117002247 -25269197 - MLT2B1 LTR ERVL 0 414 351 243 0 0 0 chr9 117002247 117002274 -25269170 + (CA)n Simple_repeat Simple_repeat 2 28 0 1119 217 105 117 chr9 117002274 117002628 -25268816 - MLT2B1 LTR ERVL -63 351 1 732 277 103 23 chr9 117002628 117002928 -25268516 + LTR33 LTR ERVL 24 347 -174 1644 167 26 39 chr9 117003599 117003905 -25267539 + AluJo SINE Alu 1 302 -10 260 294 133 56 chr9 117004284 117004464 -25266980 + L2 LINE L2 3118 3311 -2 374 340 58 24 chr9 117005028 117005234 -25266210 + MIR SINE MIR 39 251 -11 229 282 77 0 chr9 117005834 117005912 -25265532 - L2 LINE L2 0 3313 3230 369 317 70 18 chr9 117005971 117006198 -25265246 - L2 LINE L2 -833 2481 2243 270 253 0 0 chr9 117006260 117006343 -25265101 + (ATG)n Simple_repeat Simple_repeat 1 83 0 310 261 63 42 chr9 117006343 117006485 -25264959 - MIR SINE MIR -1 261 117 354 23 0 0 chr9 117006524 117006567 -25264877 + (GA)n Simple_repeat Simple_repeat 2 44 0 1661 138 71 4 chr9 117006591 117006844 -25264600 - AluJb SINE Alu -35 277 8 483 217 0 0 chr9 117007692 117007849 -25263595 + (TG)n Simple_repeat Simple_repeat 1 157 0 525 290 12 0 chr9 117007964 117008133 -25263311 + CT-rich Low_complexity Low_complexity 1 171 0 316 281 81 19 chr9 117008638 117008798 -25262646 - MIR3 SINE MIR -2 206 37 1844 158 11 7 chr9 117009010 117009295 -25262149 - AluJb SINE Alu -26 286 1 2008 166 61 20 chr9 117009376 117009785 -25261659 + MSTB LTR MaLR 1 426 0 190 103 0 0 chr9 117012524 117012553 -25258891 + L2 LINE L2 3285 3313 0 330 243 19 39 chr9 117012556 117012659 -25258785 - MIR3 SINE MIR -3 205 105 286 313 61 17 chr9 117013024 117013139 -25258305 + MIR SINE MIR 46 165 -97 287 305 15 73 chr9 117013518 117013637 -25257807 + MIR SINE MIR 22 95 -113 923 186 55 10 chr9 117013637 117013836 -25257608 + MER3 DNA MER1_type 1 208 -1 287 305 15 73 chr9 117013836 117013872 -25257572 + MIR SINE MIR 95 132 -76 711 258 65 18 chr9 117014231 117014460 -25256984 + MIR SINE MIR 9 248 -14 220 336 239 0 chr9 117015084 117015218 -25256226 - L2 LINE L2 -6 3266 3101 735 170 220 55 chr9 117015225 117015337 -25256107 + MER96B DNA MER1_type? 4 96 -321 2285 101 0 3 chr9 117015337 117015634 -25255810 - AluSq SINE Alu -17 296 1 735 170 220 55 chr9 117015634 117015721 -25255723 + MER96B DNA MER1_type? 96 236 -181 717 270 77 10 chr9 117015780 117015976 -25255468 - MER63A DNA MER1_type 0 210 2 217 317 113 58 chr9 117016014 117016254 -25255190 - L2 LINE L2 -213 3059 2807 2318 84 3 0 chr9 117016391 117016675 -25254769 - AluSp SINE Alu -26 287 3 1809 220 13 2 chr9 117016675 117017071 -25254373 + MER63B DNA MER1_type 8 407 -29 460 226 36 167 chr9 117017447 117017699 -25253745 - MIR SINE MIR -4 258 40 231 239 42 56 chr9 117017901 117017972 -25253472 - MIR SINE MIR -60 148 79 21 0 0 0 chr9 117018201 117018222 -25253222 + AT_rich Low_complexity Low_complexity 1 21 0 2211 105 3 3 chr9 117018222 117018508 -25252936 - AluSx SINE Alu -26 286 1 705 356 58 17 chr9 117019189 117019537 -25251907 + L3 LINE CR1 895 1256 -321 435 78 0 0 chr9 117020065 117020129 -25251315 + (CA)n Simple_repeat Simple_repeat 1 64 0 283 274 92 49 chr9 117020136 117020300 -25251144 + MIR SINE MIR 7 177 -85 1129 293 75 42 chr9 117020430 117020578 -25250866 - MLT1L LTR MaLR 0 615 473 2285 119 0 0 chr9 117020578 117020890 -25250554 - AluSx SINE Alu 0 312 1 1129 293 75 42 chr9 117020890 117021291 -25250153 - MLT1L LTR MaLR -142 473 48 213 211 0 0 chr9 117021359 117021411 -25250033 + CT-rich Low_complexity Low_complexity 3 54 0 473 284 27 20 chr9 117021847 117021995 -25249449 + MIR3 SINE MIR 39 187 -21 180 250 42 56 chr9 117021987 117022059 -25249385 - L2 LINE L2 -475 2839 2769 * 241 347 13 0 chr9 117022437 117022512 -25248932 - L2 LINE L2 -46 3267 3192 362 310 95 92 chr9 117022586 117022912 -25248532 + L2 LINE L2 2985 3311 -2 282 316 21 0 chr9 117023007 117023102 -25248342 - L2 LINE L2 0 3272 3176 853 131 0 0 chr9 117023581 117023703 -25247741 + FLAM_C SINE Alu 1 122 -21 252 0 0 0 chr9 117023703 117023731 -25247713 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 193 222 22 0 chr9 117023746 117023791 -25247653 - L2 LINE L2 -5 3308 3263 308 306 0 0 chr9 117024340 117024425 -25247019 - MIR3 SINE MIR -21 187 103 194 316 20 61 chr9 117025186 117025284 -25246160 - L2 LINE L2 0 3272 3179 272 257 14 27 chr9 117025574 117025648 -25245796 + MIR SINE MIR 20 92 -170 379 165 0 68 chr9 117025802 117025935 -25245509 + MER96B DNA MER1_type? 61 184 -233 23 0 0 0 chr9 117026435 117026458 -25244986 + GC_rich Low_complexity Low_complexity 1 23 0 503 260 44 92 chr9 117027752 117027924 -25243520 - L1MEc LINE L1 -3922 2322 2143 2034 133 10 7 chr9 117027924 117028232 -25243212 - AluJb SINE Alu -2 310 2 503 260 44 92 chr9 117028232 117028558 -25242886 - L1MEc LINE L1 -4101 2143 1859 1137 150 0 0 chr9 117028563 117028736 -25242708 - AluSg/x SINE Alu -18 292 120 267 31 0 0 chr9 117029032 117029064 -25242380 + (TG)n Simple_repeat Simple_repeat 2 33 0 301 260 30 0 chr9 117029400 117029500 -25241944 + MIR3 SINE MIR 91 193 -15 228 229 0 36 chr9 117029812 117029895 -25241549 + C-rich Low_complexity Low_complexity 3 82 0 29 60 0 0 chr9 117030126 117030176 -25241268 + GC_rich Low_complexity Low_complexity 1 50 0 39 82 0 22 chr9 117030245 117030380 -25241064 + GC_rich Low_complexity Low_complexity 1 132 0 512 313 130 0 chr9 117031388 117031580 -25239864 + MIR SINE MIR 46 262 0 371 145 14 159 chr9 117032537 117032675 -25238769 + MIR3 SINE MIR 82 199 -9 404 329 7 0 chr9 117033208 117033351 -25238093 + MER103 DNA DNA 16 159 -7 2386 61 0 3 chr9 117033780 117034075 -25237369 - AluY SINE Alu -17 294 1 510 317 210 23 chr9 117034112 117034177 -25237267 - L2 LINE L2 0 3272 3220 866 148 0 15 chr9 117034177 117034312 -25237132 + FLAM_A SINE Alu 1 133 0 510 317 210 23 chr9 117034312 117034546 -25236898 - L2 LINE L2 -52 3220 2917 1101 267 128 9 chr9 117034579 117035009 -25236435 - MLT1L LTR MaLR 0 615 135 594 319 38 6 chr9 117035517 117035724 -25235720 - MIR SINE MIR -32 230 16 370 349 0 8 chr9 117035935 117036067 -25235377 - MIR3 SINE MIR -70 138 8 248 186 0 0 chr9 117036501 117036544 -25234900 + MIR SINE MIR 111 153 -109 2151 82 0 0 chr9 117036587 117036866 -25234578 + AluSc SINE Alu 14 292 -17 703 274 133 17 chr9 117037675 117037909 -25233535 + MIR SINE MIR 2 262 0 184 333 32 41 chr9 117038556 117038679 -25232765 - MIR3 SINE MIR -4 204 83 376 221 0 0 chr9 117038715 117038792 -25232652 - MIR SINE MIR -72 190 114 1001 160 5 7 chr9 117038902 117039344 -25232100 + (TCCA)n Simple_repeat Simple_repeat 1 441 0 1013 144 9 2 chr9 117039364 117039773 -25231671 + (TCCA)n Simple_repeat Simple_repeat 1 592 0 599 258 153 9 chr9 117040505 117040734 -25230710 - MIR SINE MIR 0 262 1 512 269 149 53 chr9 117043168 117043469 -25227975 + MER102a DNA MER1_type 1 330 0 374 343 15 7 chr9 117044452 117044589 -25226855 - MIR3 SINE MIR -38 170 33 1882 155 0 7 chr9 117044721 117045024 -25226420 - AluJb SINE Alu -11 301 1 233 344 12 57 chr9 117045085 117045287 -25226157 - MIR3 SINE MIR -70 192 5 214 229 189 85 chr9 117045620 117045773 -25225671 + MIR SINE MIR 40 208 -54 2005 116 43 0 chr9 117045782 117046058 -25225386 + AluSx SINE Alu 1 288 -24 212 257 71 0 chr9 117046102 117046172 -25225272 + MIR SINE MIR 79 153 -55 529 230 9 9 chr9 117046841 117046954 -25224490 + MIR SINE MIR 80 192 -70 1688 109 0 4 chr9 117047241 117047471 -25223973 - AluSg/x SINE Alu -17 293 65 1085 276 61 3 chr9 117047489 117047881 -25223563 - LTR33 LTR ERVL -51 470 56 357 148 12 99 chr9 117047936 117048017 -25223427 - MIR SINE MIR -108 154 81 474 297 36 31 chr9 117048110 117048305 -25223139 - MIR3 SINE MIR -1 207 12 263 257 162 0 chr9 117049206 117049280 -25222164 - MIR3 SINE MIR -54 154 69 441 216 35 35 chr9 117049335 117049451 -25221993 + MIR SINE MIR 47 162 -100 432 300 157 22 chr9 117049625 117049855 -25221589 - MIR SINE MIR 0 262 2 338 278 83 53 chr9 117050320 117050489 -25220955 - MIR SINE MIR -37 225 52 269 281 114 33 chr9 117050595 117050805 -25220639 - L2 LINE L2 -534 2780 2554 346 320 184 5 chr9 117050808 117051014 -25220430 - MIR SINE MIR -18 244 2 246 377 99 54 chr9 117051121 117051344 -25220100 - L2 LINE L2 -40 3232 3000 267 243 103 47 chr9 117052132 117052239 -25219205 - MIR SINE MIR -31 231 119 736 248 38 24 chr9 117052876 117053086 -25218358 - MIR SINE MIR -21 241 29 2130 116 7 3 chr9 117053091 117053401 -25218043 - AluSx SINE Alu -1 311 1 370 313 17 9 chr9 117053581 117053696 -25217748 + MIR3 SINE MIR 71 186 -22 255 371 52 0 chr9 117053800 117053916 -25217528 - MIR3 SINE MIR -4 204 83 317 304 20 10 chr9 117055051 117055153 -25216291 + MIR SINE MIR 30 132 -76 1595 162 81 0 chr9 117055318 117055439 -25216005 + AluJo SINE Alu 1 111 -201 321 50 50 0 chr9 117055439 117055499 -25215945 + (TAA)n Simple_repeat Simple_repeat 2 64 0 1595 162 81 0 chr9 117055499 117055648 -25215796 + AluJo SINE Alu 111 293 -19 314 355 12 18 chr9 117055658 117055827 -25215617 - L2 LINE L2 -208 3064 2897 211 219 0 0 chr9 117056110 117056151 -25215293 - L2 LINE L2 -2 3311 3271 215 290 65 11 chr9 117056743 117056836 -25214608 - L2 LINE L2 -50 3263 3166 181 377 135 0 chr9 117057043 117057258 -25214186 - L2 LINE L2 -510 2804 2561 185 250 21 0 chr9 117057557 117057605 -25213839 - L2 LINE L2 -31 3241 3193 554 211 24 8 chr9 117057840 117057963 -25213481 - MIR SINE MIR -108 154 30 300 338 30 15 chr9 117058049 117058315 -25213129 - L1ME4a LINE L1 -228 5893 5624 203 256 0 0 chr9 117058319 117058362 -25213082 + MIR SINE MIR 28 70 -192 235 122 24 0 chr9 117058362 117058403 -25213041 - MER66B LTR ERV1 0 486 445 183 317 19 58 chr9 117059744 117059848 -25211596 - MIR SINE MIR -72 136 37 461 342 15 35 chr9 117060163 117060362 -25211082 - L1ME4a LINE L1 -1857 4289 4095 188 323 15 0 chr9 117060458 117060523 -25210921 - L2 LINE L2 0 3272 3207 1849 143 20 7 chr9 117060571 117060872 -25210572 - AluJo SINE Alu -7 305 1 229 114 0 0 chr9 117061093 117061128 -25210316 - MIR SINE MIR -92 116 82 214 283 17 0 chr9 117061488 117061548 -25209896 + MIR SINE MIR 2 62 -200 589 93 0 21 chr9 117061554 117061651 -25209793 - L1PA11 LINE L1 0 6174 6080 278 349 113 33 chr9 117061854 117062066 -25209378 + MIR SINE MIR 28 256 -6 225 178 0 0 chr9 117062265 117062310 -25209134 + (TG)n Simple_repeat Simple_repeat 1 45 0 355 257 34 1 chr9 117062311 117062409 -25209035 - MIR SINE MIR -62 146 47 368 334 22 3 chr9 117062771 117062925 -25208519 + MIR SINE MIR 22 148 -60 450 338 68 24 chr9 117064569 117064776 -25206668 - MIR SINE MIR -12 250 35 264 318 74 15 chr9 117065581 117065746 -25205698 + MIR SINE MIR 21 205 -3 382 283 9 9 chr9 117065763 117065876 -25205568 + MIR SINE MIR 8 120 -142 272 341 154 20 chr9 117066098 117066344 -25205100 + L2 LINE L2 2976 3254 -18 342 263 150 56 chr9 117067459 117067672 -25203772 - L2 LINE L2 0 3313 3081 380 345 18 0 chr9 117067704 117067817 -25203627 - MER5B DNA MER1_type -61 117 3 252 198 105 0 chr9 117067848 117067916 -25203528 - MIR3 SINE MIR -133 75 8 459 238 118 29 chr9 117068041 117068248 -25203196 + MIR3 SINE MIR 10 255 -7 257 265 29 0 chr9 117068193 117068261 -25203183 + L2 LINE L2 3203 3272 0 * 1096 158 50 63 chr9 117068439 117068661 -25202783 + MER20 DNA MER1_type 1 219 0 272 331 90 49 chr9 117068712 117069080 -25202364 + L2 LINE L2 2853 3235 -37 382 277 40 0 chr9 117069676 117069777 -25201667 + L2 LINE L2 3209 3313 0 211 259 93 0 chr9 117069957 117070011 -25201433 - MIR SINE MIR -72 136 78 483 301 29 40 chr9 117070853 117071026 -25200418 + MIR3 SINE MIR 37 207 -1 469 289 33 11 chr9 117071185 117071369 -25200075 + MIR SINE MIR 44 230 -32 935 234 115 74 chr9 117071874 117072210 -25199234 + L2 LINE L2 2807 3171 -142 1120 125 33 5 chr9 117072210 117072394 -25199050 - L1MB2 LINE L1 0 6171 5983 935 234 115 74 chr9 117072394 117072544 -25198900 + L2 LINE L2 3171 3313 0 345 331 69 15 chr9 117072563 117072778 -25198666 - MIR SINE MIR 0 262 26 321 333 22 43 chr9 117073132 117073270 -25198174 + MIR SINE MIR 67 201 -61 302 336 186 7 chr9 117073390 117073530 -25197914 - MIR3 SINE MIR -1 207 43 216 290 37 56 chr9 117075358 117075465 -25195979 - MIR3 SINE MIR -14 194 90 347 356 38 0 chr9 117076237 117076397 -25195047 - MIR3 SINE MIR -24 184 19 473 237 15 30 chr9 117076983 117077114 -25194330 + MIR SINE MIR 21 149 -113 835 266 7 68 chr9 117077263 117077427 -25194017 + MIR SINE MIR 2 144 -118 2129 115 0 34 chr9 117077427 117077750 -25193694 + AluSx SINE Alu 1 312 0 835 266 7 68 chr9 117077750 117077863 -25193581 + MIR SINE MIR 144 262 0 200 324 39 105 chr9 117077903 117078209 -25193235 - L2 LINE L2 -69 3203 2918 262 295 188 20 chr9 117078310 117078459 -25192985 + MIR SINE MIR 56 229 -33 481 306 112 26 chr9 117078936 117079272 -25192172 - L2 LINE L2 -207 3065 2680 1247 192 18 0 chr9 117079272 117079491 -25191953 + MER58A DNA MER1_type 1 223 -1 481 306 112 26 chr9 117079491 117079635 -25191809 - L2 LINE L2 -592 2680 2550 298 318 93 28 chr9 117080744 117080851 -25190593 - MIR SINE MIR -130 132 19 183 228 203 13 chr9 117080927 117081006 -25190438 - MIR3 SINE MIR -27 181 88 432 360 128 33 chr9 117081477 117081813 -25189631 - L2 LINE L2 0 3313 2946 256 309 60 24 chr9 117081807 117081891 -25189553 + MIR SINE MIR 93 179 -83 * 204 125 0 0 chr9 117081888 117081920 -25189524 + L2 LINE L2 3264 3295 -18 * 222 229 10 135 chr9 117081968 117082064 -25189380 + MIR3 SINE MIR 83 166 -42 317 269 48 39 chr9 117082166 117082270 -25189174 - MIR SINE MIR -68 140 36 382 237 79 66 chr9 117082600 117082752 -25188692 - L2 LINE L2 0 3313 3160 348 270 32 40 chr9 117082821 117082947 -25188497 - MIR SINE MIR -53 209 85 549 305 11 17 chr9 117083650 117083827 -25187617 - MIR3 SINE MIR -11 197 22 207 210 74 74 chr9 117084320 117084401 -25187043 - MIR SINE MIR -162 100 20 245 250 0 29 chr9 117084762 117084830 -25186614 + L3b LINE CR1 1322 1387 -196 245 310 11 11 chr9 117086504 117086591 -25184853 + MIR3 SINE MIR 113 199 -9 619 245 14 14 chr9 117086880 117087027 -25184417 + MIR SINE MIR 14 160 -102 223 265 45 63 chr9 117087459 117087578 -25183866 - MIR SINE MIR -31 177 41 1873 152 24 0 chr9 117087769 117088059 -25183385 + AluJb SINE Alu 1 297 -15 351 335 79 6 chr9 117088356 117088520 -25182924 + MIR SINE MIR 38 213 -49 241 259 2 84 chr9 117089183 117089303 -25182141 + MIR SINE MIR 63 171 -37 193 301 151 0 chr9 117089313 117089386 -25182058 - MIR3 SINE MIR -9 199 116 382 311 25 8 chr9 117089831 117089953 -25181491 + MIR SINE MIR 6 129 -133 446 298 43 7 chr9 117090531 117090649 -25180795 + MIR SINE MIR 47 172 -90 2225 105 0 3 chr9 117090649 117090953 -25180491 + AluSx SINE Alu 1 303 -9 446 298 43 7 chr9 117090953 117090975 -25180469 + MIR SINE MIR 172 192 -70 332 293 45 30 chr9 117091706 117091839 -25179605 + MIR3 SINE MIR 11 145 -63 226 118 39 39 chr9 117091932 117091983 -25179461 - MIR3 SINE MIR -52 156 106 298 271 62 42 chr9 117092428 117092524 -25178920 + MIR3 SINE MIR 81 178 -30 925 263 26 13 chr9 117092666 117092898 -25178546 + MIR SINE MIR 27 261 -1 271 299 109 25 chr9 117093404 117093553 -25177891 + MIR SINE MIR 4 167 -63 964 246 66 25 chr9 117093582 117093826 -25177618 + MIR SINE MIR 8 261 -1 437 309 27 13 chr9 117093879 117094028 -25177416 + MER117 DNA MER1_type 47 197 0 482 335 33 19 chr9 117094115 117094327 -25177117 - L3 LINE CR1 -20 1557 1343 1792 142 0 14 chr9 117094584 117094865 -25176579 - AluJb SINE Alu -5 307 31 704 143 265 0 chr9 117094926 117095073 -25176371 - MER53 DNA DNA -1 188 3 190 292 221 18 chr9 117095098 117095211 -25176233 - MIR SINE MIR -57 151 16 203 186 34 85 chr9 117095784 117095843 -25175601 - L2 LINE L2 -12 3260 3205 435 294 52 13 chr9 117096252 117096405 -25175039 - MIR SINE MIR -31 231 73 385 311 91 75 chr9 117096684 117097015 -25174429 - L2 LINE L2 -6 3266 2931 522 261 0 49 chr9 117097337 117097479 -25173965 + MIR SINE MIR 47 181 -81 715 258 54 8 chr9 117098465 117098686 -25172758 + MIR SINE MIR 25 246 -16 1888 161 0 7 chr9 117098752 117099056 -25172388 - AluJo SINE Alu -5 307 6 292 294 67 2 chr9 117099098 117099210 -25172234 - MIR SINE MIR -72 136 41 854 196 40 0 chr9 117099779 117099952 -25171492 - MER20 DNA MER1_type 0 219 40 410 310 57 6 chr9 117099952 117100110 -25171334 - MIR SINE MIR -57 205 40 191 338 40 0 chr9 117101507 117101581 -25169863 - MIR SINE MIR -68 194 118 2312 83 0 0 chr9 117102658 117102947 -25168497 + AluSg SINE Alu 1 289 -21 320 357 0 0 chr9 117103025 117103123 -25168321 - MIR3 SINE MIR -15 193 96 207 0 0 0 chr9 117104080 117104103 -25167341 + (A)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr9 117104172 117104194 -25167250 + AT_rich Low_complexity Low_complexity 1 22 0 1820 127 36 45 chr9 117104664 117104972 -25166472 + AluSx SINE Alu 1 305 -7 228 338 109 30 chr9 117105681 117105983 -25165461 + L2 LINE L2 2596 2921 -393 242 310 53 44 chr9 117107055 117107168 -25164276 - MIR SINE MIR -63 145 32 554 299 82 5 chr9 117107205 117107389 -25164055 - MIR SINE MIR -12 250 53 259 287 0 35 chr9 117107646 117107733 -25163711 - MIR SINE MIR -79 129 46 506 303 34 11 chr9 117108654 117108829 -25162615 - MIR SINE MIR -11 251 73 549 187 28 8 chr9 117109240 117109391 -25162053 - MIR SINE MIR -65 143 38 248 331 74 43 chr9 117109880 117110043 -25161401 - MIR SINE MIR -78 184 17 458 317 12 6 chr9 117110681 117110842 -25160602 - MIR SINE MIR -95 167 6 195 42 0 0 chr9 117111526 117111550 -25159894 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2499 206 31 8 chr9 117112538 117113048 -25158396 - Charlie1b DNA MER1_type 0 523 2 226 220 0 0 chr9 117113580 117113630 -25157814 + L1ME4a LINE L1 5724 5773 -348 1602 107 0 9 chr9 117113785 117114010 -25157434 - AluSc SINE Alu 0 309 87 723 135 29 0 chr9 117114011 117114115 -25157329 + AluSc SINE Alu 9 115 -194 344 275 42 0 chr9 117114133 117114253 -25157191 + L1ME4a LINE L1 5989 6113 -8 478 283 16 71 chr9 117114796 117114980 -25156464 - MIR3 SINE MIR -17 191 18 2255 87 13 7 chr9 117115016 117115325 -25156119 - AluSx SINE Alu -1 311 1 533 198 0 63 chr9 117115348 117115474 -25155970 + MIR3 SINE MIR 45 162 -46 480 299 14 0 chr9 117115812 117115959 -25155485 - MIR SINE MIR -12 250 102 302 324 29 19 chr9 117116070 117116175 -25155269 - MIR3 SINE MIR -15 193 88 1634 191 81 29 chr9 117116874 117117330 -25154114 - Charlie4a DNA MER1_type -8 500 21 234 355 65 32 chr9 117117332 117117456 -25153988 - MIR3 SINE MIR -27 181 54 457 147 53 0 chr9 117117731 117117806 -25153638 + MADE1 DNA Mariner 2 80 0 569 282 120 29 chr9 117117814 117118023 -25153421 - MIR SINE MIR -11 251 24 187 347 42 0 chr9 117118179 117118251 -25153193 + L2 LINE L2 3148 3222 -50 244 198 143 66 chr9 117118922 117119013 -25152431 - MIR SINE MIR -98 164 67 * 267 216 34 80 chr9 117118996 117119084 -25152360 + MIR SINE MIR 178 261 -1 413 279 50 31 chr9 117120874 117121035 -25150409 - MIR3 SINE MIR -42 166 3 333 330 28 9 chr9 117121087 117121196 -25150248 - MIR SINE MIR -62 200 90 336 148 0 0 chr9 117121277 117121338 -25150106 + (TCC)n Simple_repeat Simple_repeat 3 63 0 654 164 0 97 chr9 117121461 117121595 -25149849 - AluJo SINE Alu -145 167 47 1857 106 0 35 chr9 117121700 117121984 -25149460 + AluSp SINE Alu 25 298 -15 282 320 41 0 chr9 117122061 117122158 -25149286 - L2 LINE L2 -2 3270 3170 229 256 120 26 chr9 117123240 117123357 -25148087 + MIR3 SINE MIR 73 200 -8 195 340 90 10 chr9 117123565 117123665 -25147779 + MIR3 SINE MIR 61 168 -40 381 232 63 1 chr9 117123999 117124109 -25147335 - MIR SINE MIR -73 135 19 326 371 28 0 chr9 117124259 117124402 -25147042 + MIR SINE MIR 108 254 -8 291 372 191 0 chr9 117125596 117125811 -25145633 + MIR SINE MIR 7 262 0 438 276 1 17 chr9 117125815 117125958 -25145486 - MIR SINE MIR -53 155 15 209 290 37 75 chr9 117126351 117126458 -25144986 - L2 LINE L2 -173 3099 2997 508 76 76 0 chr9 117126478 117126557 -25144887 - L1MA5 LINE L1 -66 6234 6150 236 100 80 0 chr9 117126556 117126606 -25144838 + L1MA5 LINE L1 6245 6298 -2 * 2029 137 137 13 chr9 117126793 117127174 -25144270 + MSTA LTR MaLR 1 428 0 183 100 0 0 chr9 117127341 117127371 -25144073 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 309 397 98 13 chr9 117128204 117128428 -25143016 + MIR SINE MIR 20 262 0 2218 115 3 0 chr9 117128448 117128760 -25142684 + AluSp SINE Alu 1 313 0 336 316 132 7 chr9 117130360 117130496 -25140948 + MIR SINE MIR 92 244 -18 308 234 32 43 chr9 117130527 117130621 -25140823 - L2 LINE L2 -19 3253 3161 232 26 0 51 chr9 117130726 117130765 -25140679 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1129 163 108 0 chr9 117131189 117131440 -25140004 + L1M4 LINE L1 5327 5604 -570 259 344 92 23 chr9 117131504 117131635 -25139809 - MIR3 SINE MIR -62 146 7 * 355 315 148 23 chr9 117131577 117131793 -25139651 + MIR SINE MIR 18 260 -2 356 164 14 14 chr9 117131990 117132063 -25139381 - Tigger5 DNA MER2_type 0 2323 2251 279 196 0 18 chr9 117132032 117132088 -25139356 - Tigger5 DNA MER2_type -2268 55 1 * 292 183 366 0 chr9 117132392 117132485 -25138959 - MIR SINE MIR -44 218 92 1781 144 7 13 chr9 117132773 117133078 -25138366 + AluSx SINE Alu 3 305 -7 376 283 35 15 chr9 117133521 117133709 -25137735 - MIR3 SINE MIR -61 147 3 756 220 6 0 chr9 117133753 117133921 -25137523 + L1MC3 LINE L1 7412 7580 -205 1044 191 10 5 chr9 117133931 117134125 -25137319 + L1MC2 LINE L1 6139 6333 -11 329 269 7 99 chr9 117134199 117134340 -25137104 + L2 LINE L2 3186 3313 0 583 291 32 31 chr9 117135227 117135479 -25135965 - MIR SINE MIR -1 261 9 232 321 47 0 chr9 117135640 117135746 -25135698 + L2 LINE L2 2997 3107 -165 282 29 0 0 chr9 117135816 117135851 -25135593 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 906 250 52 28 chr9 117135900 117136148 -25135296 + MIR SINE MIR 8 261 -1 737 203 31 12 chr9 117136171 117136334 -25135110 - MIR3 SINE MIR -26 182 17 393 336 0 0 chr9 117137238 117137351 -25134093 + MIR SINE MIR 133 245 -17 253 250 0 0 chr9 117137527 117137587 -25133857 - MIR SINE MIR -100 162 103 180 77 0 0 chr9 117138021 117138047 -25133397 + (TA)n Simple_repeat Simple_repeat 2 27 0 1940 132 7 11 chr9 117138047 117138334 -25133110 - AluSx SINE Alu -26 286 1 288 0 0 0 chr9 117138616 117138648 -25132796 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 313 371 95 22 chr9 117139097 117139329 -25132115 - MIR SINE MIR 0 262 14 305 341 106 12 chr9 117139290 117139460 -25131984 + MIR SINE MIR 58 243 -19 * 435 221 11 0 chr9 117139906 117140025 -25131419 + MIR SINE MIR 104 223 -39 2209 82 4 0 chr9 117140174 117140475 -25130969 - AluSg SINE Alu 0 302 1 658 316 96 67 chr9 117142249 117143087 -25128357 + L2 LINE L2 2364 3222 -50 256 171 105 13 chr9 117143665 117143741 -25127703 + MIR SINE MIR 30 112 -96 1750 168 0 46 chr9 117144489 117144816 -25126628 + AluJo SINE Alu 1 312 0 3005 104 16 5 chr9 117144828 117145271 -25126173 + L1MD1 LINE L1 5792 6239 -3 2121 120 3 0 chr9 117145271 117145563 -25125881 + AluSx SINE Alu 1 293 -19 2252 92 0 0 chr9 117145596 117145891 -25125553 + AluSg SINE Alu 1 295 -15 424 212 34 17 chr9 117145901 117146019 -25125425 + L1ME3A LINE L1 5940 6059 -111 780 122 8 0 chr9 117146210 117146333 -25125111 - AluSg/x SINE Alu -2 310 187 527 177 137 0 chr9 117146468 117146592 -25124852 - L1MD2 LINE L1 -4 6355 6215 495 318 84 81 chr9 117146592 117146985 -25124459 + L2 LINE L2 2879 3272 0 195 300 0 29 chr9 117147009 117147079 -25124365 - MIR3 SINE MIR -138 70 3 1838 157 40 0 chr9 117147960 117148400 -25123044 + AluSx SINE Alu 1 452 0 252 184 0 46 chr9 117148431 117148518 -25122926 + A-rich Low_complexity Low_complexity 3 85 0 368 294 15 118 chr9 117148518 117148722 -25122722 + MIR SINE MIR 8 190 -72 1029 120 7 0 chr9 117148863 117149013 -25122431 - AluSg/x SINE Alu -57 253 103 200 351 35 18 chr9 117149014 117149128 -25122316 - L2 LINE L2 -45 3268 3153 232 218 170 68 chr9 117149174 117149321 -25122123 - L2 LINE L2 -3136 178 17 227 324 67 9 chr9 117149726 117149831 -25121613 - L2 LINE L2 -17 3255 3145 296 221 39 26 chr9 117149856 117149933 -25121511 - L2 LINE L2 -6 3266 3189 407 395 44 12 chr9 117150769 117151017 -25120427 + MIR SINE MIR 7 262 0 2284 64 3 10 chr9 117151183 117151478 -25119966 + AluY SINE Alu 1 293 -18 184 276 172 0 chr9 117151539 117151597 -25119847 - MIR SINE MIR -106 102 35 659 304 11 11 chr9 117151642 117151833 -25119611 - MIR SINE MIR -71 191 1 186 349 63 0 chr9 117152438 117152501 -25118943 - L2 LINE L2 -2 3270 3204 237 191 15 29 chr9 117152631 117152699 -25118745 + CT-rich Low_complexity Low_complexity 1 67 0 1576 161 77 0 chr9 117152891 117153164 -25118280 + AluJo SINE Alu 3 296 -16 537 288 29 101 chr9 117153823 117154101 -25117343 - L2 LINE L2 0 3272 3015 382 222 71 0 chr9 117154333 117154432 -25117012 - MIR SINE MIR -21 241 136 519 174 0 0 chr9 117154557 117154643 -25116801 - MIR SINE MIR -141 121 36 248 312 35 35 chr9 117155420 117155561 -25115883 + MIR3 SINE MIR 45 185 -23 351 333 50 19 chr9 117155716 117155875 -25115569 + MIR SINE MIR 20 183 -79 314 320 74 0 chr9 117155930 117156097 -25115347 + MIR SINE MIR 40 217 -45 273 314 136 8 chr9 117156586 117156704 -25114740 - L3 LINE CR1 -15 1562 1430 460 287 63 7 chr9 117156717 117156860 -25114584 + MIR SINE MIR 1 151 -111 310 306 18 27 chr9 117157219 117157330 -25114114 - MIR SINE MIR -65 143 34 255 343 145 14 chr9 117157513 117157720 -25113724 - MIR SINE MIR -6 256 23 2338 100 0 0 chr9 117157906 117158216 -25113228 - AluSg SINE Alu 0 310 1 263 247 31 52 chr9 117158578 117158675 -25112769 + MIR3 SINE MIR 88 182 -26 248 295 74 11 chr9 117158972 117159067 -25112377 + MIR3 SINE MIR 76 176 -32 261 294 33 36 chr9 117159665 117159826 -25111618 + MIR3 SINE MIR 26 184 -24 276 353 69 0 chr9 117160632 117160748 -25110696 + MIR SINE MIR 96 219 -43 208 313 36 18 chr9 117161183 117161295 -25110149 - L2 LINE L2 -288 3025 2912 210 287 21 21 chr9 117162349 117162443 -25109001 + MIR SINE MIR 56 149 -59 232 297 54 0 chr9 117163003 117163077 -25108367 + MIR3 SINE MIR 81 158 -50 456 303 47 60 chr9 117163537 117163719 -25107725 + MIR SINE MIR 25 205 -57 1492 139 0 0 chr9 117163719 117163934 -25107510 + AluJo SINE Alu 86 300 -12 456 303 47 60 chr9 117163934 117163985 -25107459 + MIR SINE MIR 205 255 -7 1072 135 0 0 chr9 117164474 117164630 -25106814 + AluSg/x SINE Alu 156 311 -1 287 258 101 22 chr9 117164688 117164777 -25106667 - L2 LINE L2 -30 3283 3188 448 284 57 28 chr9 117165180 117165356 -25106088 - MIR SINE MIR -80 182 2 590 231 45 8 chr9 117166246 117166380 -25105064 - MIR SINE MIR -123 139 1 231 334 47 29 chr9 117166383 117166522 -25104922 - MIR SINE MIR -63 145 4 194 309 15 0 chr9 117166759 117166827 -25104617 + MIR SINE MIR 66 134 -74 446 270 6 75 chr9 117167079 117167238 -25104206 - MIR SINE MIR -4 258 111 522 280 233 0 chr9 117167624 117167813 -25103631 - MIR SINE MIR 0 262 30 379 341 60 0 chr9 117167831 117167998 -25103446 + MIR3 SINE MIR 13 189 -19 252 237 11 86 chr9 117168577 117168670 -25102774 - L3 LINE CR1 -412 1165 1080 2052 111 35 0 chr9 117168945 117169233 -25102211 + AluSx SINE Alu 1 298 -14 719 273 56 17 chr9 117169325 117169556 -25101888 + MIR SINE MIR 17 256 -6 180 0 0 0 chr9 117169801 117169821 -25101623 + (TTA)n Simple_repeat Simple_repeat 2 21 0 426 206 0 0 chr9 117169929 117169997 -25101447 + AluJ/FLAM SINE Alu 1 68 -244 1285 106 14 43 chr9 117170120 117170327 -25101117 + AluJo SINE Alu 100 300 -12 583 275 218 33 chr9 117171054 117171371 -25100073 + L2 LINE L2 2832 3227 -45 2188 125 3 0 chr9 117171371 117171682 -25099762 + AluSx SINE Alu 1 312 0 583 275 218 33 chr9 117171682 117171731 -25099713 + L2 LINE L2 3227 3266 -6 190 367 125 0 chr9 117171772 117171892 -25099552 - L2 LINE L2 0 3272 3138 305 317 24 24 chr9 117171975 117172098 -25099346 - MIR3 SINE MIR -76 132 10 401 246 50 58 chr9 117172962 117173104 -25098340 + MIR SINE MIR 17 161 -68 540 211 14 5 chr9 117173209 117173435 -25098009 + (TGG)n Simple_repeat Simple_repeat 1 228 0 280 311 68 27 chr9 117174018 117174166 -25097278 + MIR SINE MIR 109 262 0 1273 134 20 103 chr9 117174197 117174313 -25097131 - Charlie5 DNA MER1_type -1 2623 2499 1632 182 0 40 chr9 117174313 117174609 -25096835 + AluJo SINE Alu 7 290 -22 1273 134 20 103 chr9 117174609 117174842 -25096602 - Charlie5 DNA MER1_type -125 2499 2303 616 153 68 0 chr9 117174825 117174943 -25096501 - Charlie5 DNA MER1_type -251 2361 2236 * 2065 128 34 3 chr9 117174949 117175246 -25096198 - AluSx SINE Alu -6 306 1 616 162 0 0 chr9 117175250 117175355 -25096089 - MER3 DNA MER1_type -87 122 65 187 279 16 16 chr9 117175364 117175425 -25096019 - MIR SINE MIR -63 145 85 185 351 168 0 chr9 117175587 117175718 -25095726 - L3 LINE CR1 -193 1384 1232 349 287 47 16 chr9 117176808 117176937 -25094507 - MIR SINE MIR -101 161 29 1729 206 8 14 chr9 117177881 117178235 -25093209 + MER63 DNA MER1_type 682 1033 -28 207 301 37 21 chr9 117179304 117179416 -25092028 - MIR SINE MIR -79 129 20 219 250 135 21 chr9 117179714 117179810 -25091634 - L2 LINE L2 -34 3279 3173 196 333 0 0 chr9 117180822 117180882 -25090562 - L2 LINE L2 -9 3304 3245 393 312 46 17 chr9 117181028 117181201 -25090243 - MIR SINE MIR -70 192 15 980 15 0 52 chr9 117181370 117181506 -25089938 + L1PA4 LINE L1 6027 6155 0 256 267 193 0 chr9 117181580 117181715 -25089729 + MIR SINE MIR 81 241 -21 287 314 97 0 chr9 117182587 117182711 -25088733 + MIR SINE MIR 88 223 -39 207 238 119 10 chr9 117182846 117182947 -25088497 - MIR SINE MIR -116 146 35 181 337 0 48 chr9 117186045 117186128 -25085316 - L2 LINE L2 -53 3219 3141 2259 107 3 0 chr9 117186220 117186518 -25084926 + AluSx SINE Alu 8 306 -6 288 227 0 0 chr9 117186977 117187065 -25084379 + (CA)n Simple_repeat Simple_repeat 2 89 0 9981 224 50 47 chr9 117187367 117188703 -25082741 + L1ME1 LINE L1 2154 3485 -2681 2553 64 0 26 chr9 117188703 117189016 -25082428 + AluSg SINE Alu 1 305 -5 9981 224 50 47 chr9 117189016 117190395 -25081049 + L1ME1 LINE L1 3485 4883 -1283 2300 87 37 0 chr9 117190395 117190693 -25080751 - AluSp SINE Alu -4 309 1 9981 224 50 47 chr9 117190693 117191937 -25079507 + L1ME1 LINE L1 4883 6122 -44 313 271 30 36 chr9 117191820 117191986 -25079458 + L1MA10 LINE L1 6169 6333 -1 * 5288 205 134 18 chr9 117192062 117192766 -25078678 + L1ME4a LINE L1 3627 4248 -1914 821 154 8 0 chr9 117192766 117192896 -25078548 + FLAM_A SINE Alu 1 131 -2 5288 205 134 18 chr9 117192896 117193788 -25077656 + L1ME4a LINE L1 4248 5407 -755 356 243 83 21 chr9 117193920 117194064 -25077380 - MIR SINE MIR -70 192 40 389 269 122 30 chr9 117194253 117194450 -25076994 + MIR SINE MIR 48 262 0 206 94 0 0 chr9 117194928 117194960 -25076484 - L2 LINE L2 0 3313 3282 465 250 26 0 chr9 117195020 117195136 -25076308 + MIR SINE MIR 39 157 -105 214 61 30 0 chr9 117195952 117195985 -25075459 + MIR SINE MIR 112 145 -117 2020 106 65 0 chr9 117197190 117197483 -25073961 + AluSx SINE Alu 1 312 0 658 256 32 92 chr9 117197905 117197971 -25073473 - MIR SINE MIR 0 262 194 2400 100 0 0 chr9 117197971 117198280 -25073164 - AluSx SINE Alu -1 311 3 658 256 32 92 chr9 117198280 117198463 -25072981 - MIR SINE MIR -68 194 28 387 267 54 79 chr9 117198606 117198706 -25072738 - L2 LINE L2 -181 3091 2990 898 196 73 0 chr9 117198706 117198910 -25072534 - MER20 DNA MER1_type 0 219 1 387 267 54 79 chr9 117198910 117199211 -25072233 - L2 LINE L2 -282 2990 2697 206 325 75 0 chr9 117199984 117200064 -25071380 - L2 LINE L2 -49 3223 3138 448 216 216 66 chr9 117200328 117200587 -25070857 - MLT1J1 LTR MaLR -148 298 1 199 289 26 0 chr9 117200769 117200845 -25070599 - L3 LINE CR1 -203 1374 1297 342 294 22 15 chr9 117201788 117201924 -25069520 + MIR3 SINE MIR 25 161 -47 232 254 0 0 chr9 117202106 117202161 -25069283 + MIR SINE MIR 89 143 -119 375 287 25 38 chr9 117202593 117202750 -25068694 + MIR3 SINE MIR 47 201 -7 440 260 14 21 chr9 117204643 117204790 -25066654 + L1ME4a LINE L1 5466 5608 -513 * 809 119 10 0 chr9 117204786 117204983 -25066461 + L1PB1 LINE L1 5911 6150 -1 486 232 170 33 chr9 117205009 117205250 -25066194 + L1ME4a LINE L1 5603 5876 -245 303 150 0 0 chr9 117206274 117206334 -25065110 + (A)n Simple_repeat Simple_repeat 1 60 0 21 0 0 0 chr9 117207221 117207242 -25064202 + AT_rich Low_complexity Low_complexity 1 21 0 1313 224 102 15 chr9 117207361 117207772 -25063672 - MLT1C LTR MaLR -20 447 1 722 193 155 9 chr9 117207823 117208036 -25063408 - L1MB5 LINE L1 -8 6166 5923 408 82 0 16 chr9 117208155 117208216 -25063228 + MADE1 DNA Mariner 21 80 0 1141 129 12 96 chr9 117208216 117208456 -25062988 - L1MB5 LINE L1 -249 5925 5706 683 180 23 41 chr9 117208551 117208723 -25062721 + MER53 DNA DNA 3 171 -18 2160 51 0 8 chr9 117208895 117209149 -25062295 + AluY SINE Alu 1 252 -59 1361 153 19 65 chr9 117209154 117209539 -25061905 - MLT2B1 LTR ERVL -52 362 1 240 260 78 52 chr9 117209546 117209741 -25061703 - L2 LINE L2 -252 3020 2821 275 275 0 10 chr9 117210338 117210423 -25061021 + MIR SINE MIR 70 146 -62 295 218 26 13 chr9 117210472 117210550 -25060894 + MER116 DNA Mariner 2 80 0 360 294 16 72 chr9 117210569 117210763 -25060681 - MIR SINE MIR 0 262 80 242 264 0 23 chr9 117210975 117211062 -25060382 + MIR SINE MIR 68 152 -56 255 316 0 0 chr9 117211065 117211141 -25060303 + HsTC2 DNA Tc2 4 79 -1819 899 104 0 24 chr9 117211277 117211402 -25060042 + FLAM_C SINE Alu 5 126 -17 569 211 0 0 chr9 117211424 117211538 -25059906 - MIR SINE MIR -54 208 95 23 0 0 29 chr9 117212072 117212086 -25059358 + AT_rich Low_complexity Low_complexity 1 14 -19 2222 69 0 14 chr9 117212086 117212361 -25059083 + AluY SINE Alu 28 298 -13 23 0 0 29 chr9 117212361 117212380 -25059064 + AT_rich Low_complexity Low_complexity 14 33 0 1735 288 64 38 chr9 117212799 117213598 -25057846 + L2 LINE L2 1431 2250 -1064 355 256 22 53 chr9 117213603 117213830 -25057614 + L1M4 LINE L1 4957 5176 -970 212 304 127 0 chr9 117214963 117215042 -25056402 + MIR SINE MIR 88 176 -86 9846 28 2 0 chr9 117216528 117217749 -25053695 - L1P LINE L1 -901 5245 4023 494 237 52 23 chr9 117219255 117219428 -25052016 + L2 LINE L2 2345 2522 -792 239 238 0 16 chr9 117219422 117219485 -25051959 + L2 LINE L2 3250 3311 -2 * 2263 128 10 0 chr9 117219533 117219837 -25051607 + AluSq SINE Alu 2 308 -5 274 291 34 40 chr9 117219931 117220079 -25051365 + MLT1H LTR MaLR 92 238 -311 257 311 0 0 chr9 117220446 117220520 -25050924 - MIR3 SINE MIR -14 194 121 391 279 0 57 chr9 117221639 117221779 -25049665 + FLAM_A SINE Alu 2 133 0 253 125 20 57 chr9 117221983 117222046 -25049398 + THE1B LTR MaLR 3 68 -307 406 284 226 0 chr9 117222673 117222828 -25048616 + MIR SINE MIR 2 191 -71 444 184 8 11 chr9 117222934 117223060 -25048384 - FRAM SINE Alu -16 160 1 269 292 50 67 chr9 117223060 117223140 -25048304 + MIR SINE MIR 53 130 -132 21 0 0 0 chr9 117224617 117224638 -25046806 + AT_rich Low_complexity Low_complexity 1 21 0 244 307 88 9 chr9 117224937 117225051 -25046393 - MIR SINE MIR -59 203 81 193 238 24 0 chr9 117226231 117226273 -25045171 + MER5B DNA MER1_type 4 46 -132 404 264 52 40 chr9 117226353 117226527 -25044917 - MLT1J2 LTR MaLR -238 212 37 937 153 6 6 chr9 117227345 117227522 -25043922 + CT-rich Low_complexity Low_complexity 2 178 0 1966 142 13 10 chr9 117228195 117228505 -25042939 + AluSx SINE Alu 1 311 -1 270 0 0 0 chr9 117228679 117228709 -25042735 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 272 252 70 35 chr9 117230980 117231095 -25040349 + MIR3 SINE MIR 73 191 -17 410 324 33 44 chr9 117231313 117231559 -25039885 + MIR SINE MIR 11 252 -10 233 88 0 0 chr9 117234843 117234877 -25036567 - Alu SINE Alu -268 34 1 1679 128 65 48 chr9 117234927 117235217 -25036227 - AluJo SINE Alu -17 295 1 1427 222 30 82 chr9 117235301 117235404 -25036040 + L1ME2 LINE L1 5647 5754 -410 2237 106 7 0 chr9 117235404 117235706 -25035738 + AluSc SINE Alu 5 308 -1 1427 222 30 82 chr9 117235706 117236138 -25035306 + L1ME2 LINE L1 5754 6154 -10 256 318 83 40 chr9 117236381 117236708 -25034736 - L2 LINE L2 -385 2929 2589 1187 12 24 31 chr9 117236726 117236983 -25034461 + (TCTA)n Simple_repeat Simple_repeat 1 255 0 2016 124 7 11 chr9 117236983 117237266 -25034178 - AluSx SINE Alu -30 282 1 1469 229 138 46 chr9 117237310 117237873 -25033571 + Zaphod DNA AcHobo 1 615 -3416 1980 131 0 0 chr9 117237911 117238179 -25033265 - AluSx SINE Alu -8 304 37 202 353 16 8 chr9 117241325 117241447 -25029997 + L2 LINE L2 2942 3064 -208 389 293 64 0 chr9 117241791 117241926 -25029518 - MIR3 SINE MIR -7 201 58 996 186 57 0 chr9 117243268 117243462 -25027982 - Tigger3(Golem) DNA MER2_type -2822 207 3 228 317 78 14 chr9 117244112 117244254 -25027190 - Charlie7 DNA MER1_type -2456 156 6 315 280 21 11 chr9 117244419 117244512 -25026932 + MIR SINE MIR 59 152 -110 204 213 131 16 chr9 117245203 117245264 -25026180 - L2 LINE L2 -57 3215 3148 247 247 130 39 chr9 117245483 117245637 -25025807 - L2 LINE L2 -186 3086 2919 431 294 0 7 chr9 117246034 117246180 -25025264 + MIR SINE MIR 24 168 -94 587 257 61 85 chr9 117246277 117246476 -25024968 + MER113 DNA MER1_type? 141 343 -178 2234 59 24 0 chr9 117246476 117246765 -25024679 + L1PA4 LINE L1 5860 6155 0 587 257 61 85 chr9 117246765 117246841 -25024603 + MER113 DNA MER1_type? 343 419 -102 2026 161 0 0 chr9 117246841 117247146 -25024298 - AluJb SINE Alu -7 305 1 587 257 61 85 chr9 117247146 117247247 -25024197 + MER113 DNA MER1_type? 419 509 -12 275 122 20 0 chr9 117247485 117247534 -25023910 + CT-rich Low_complexity Low_complexity 1 50 0 473 282 183 5 chr9 117248019 117248232 -25023212 - MIR SINE MIR -1 261 11 222 233 67 0 chr9 117248575 117248635 -25022809 + MIR SINE MIR 119 182 -80 352 284 105 25 chr9 117248860 117249166 -25022278 + L2 LINE L2 2706 3081 -191 363 252 63 18 chr9 117249861 117249972 -25021472 + MIR SINE MIR 32 147 -61 771 279 40 24 chr9 117250776 117251027 -25020417 - MIR SINE MIR -1 261 7 458 252 148 7 chr9 117251379 117251534 -25019910 + LTR33 LTR ERVL 5 181 -340 357 298 47 23 chr9 117251531 117251702 -25019742 + LTR33 LTR ERVL 347 521 0 * 518 302 86 25 chr9 117251921 117252166 -25019278 + MIR SINE MIR 3 262 0 312 286 131 49 chr9 117252723 117253073 -25018371 + L1MC4a LINE L1 5793 6171 -1637 26 50 0 0 chr9 117253332 117253372 -25018072 + AT_rich Low_complexity Low_complexity 1 40 0 1184 173 129 4 chr9 117253372 117253650 -25017794 - MER33 DNA MER1_type -11 313 1 1363 202 19 41 chr9 117253784 117253797 -25017647 + L1MB8 LINE L1 5815 5827 -351 2353 82 0 3 chr9 117253797 117254088 -25017356 + AluSx SINE Alu 21 310 -2 1363 202 19 41 chr9 117254088 117254436 -25017008 + L1MB8 LINE L1 5827 6168 -10 519 168 0 0 chr9 117254455 117254550 -25016894 + G-rich Low_complexity Low_complexity 2 96 0 193 149 81 95 chr9 117254732 117254806 -25016638 + MIR SINE MIR 100 172 -90 542 325 39 0 chr9 117255732 117255935 -25015509 + MIR SINE MIR 17 227 -35 376 298 40 56 chr9 117256479 117256712 -25014732 - MIR SINE MIR 0 262 36 1025 172 6 0 chr9 117257085 117257259 -25014185 + MER58A DNA MER1_type 47 221 -3 196 320 50 10 chr9 117257259 117257359 -25014085 + MIR SINE MIR 15 118 -144 684 176 13 18 chr9 117257402 117257627 -25013817 + (CACCAT)n Simple_repeat Simple_repeat 1 223 0 266 203 0 38 chr9 117257646 117257725 -25013719 + (CACCAT)n Simple_repeat Simple_repeat 4 79 0 188 33 0 33 chr9 117258290 117258320 -25013124 + (TGGGGG)n Simple_repeat Simple_repeat 5 33 0 331 161 86 54 chr9 117258462 117258555 -25012889 + MER103 DNA DNA 14 109 -57 202 188 0 0 chr9 117258556 117258588 -25012856 + polypurine Low_complexity Low_complexity 1 32 0 577 228 9 0 chr9 117259032 117259146 -25012298 + MIR SINE MIR 25 139 -123 363 244 35 61 chr9 117259278 117259393 -25012051 + MIR3 SINE MIR 14 125 -83 21 0 0 0 chr9 117260732 117260753 -25010691 + GC_rich Low_complexity Low_complexity 1 21 0 467 258 0 0 chr9 117261652 117261749 -25009695 - MIR SINE MIR -140 122 26 1898 138 0 33 chr9 117261788 117262092 -25009352 + AluJo SINE Alu 11 304 -8 546 252 33 28 chr9 117263009 117263223 -25008221 + L1MC5 LINE L1 7023 7237 -724 831 251 35 107 chr9 117263348 117263981 -25007463 + L1MC5 LINE L1 7326 7912 -49 474 271 3 13 chr9 117264179 117264494 -25006950 + (CACCC)n Simple_repeat Simple_repeat 1 311 0 251 234 181 0 chr9 117265750 117265844 -25005600 + MIR3 SINE MIR 62 172 -36 539 326 110 31 chr9 117265850 117266206 -25005238 + L2 LINE L2 2275 2658 -656 557 273 96 101 chr9 117266293 117266710 -25004734 + L2 LINE L2 2819 3233 -39 215 149 0 21 chr9 117266741 117266788 -25004656 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 319 209 19 0 chr9 117266861 117266966 -25004478 + (TCCA)n Simple_repeat Simple_repeat 3 109 0 184 364 15 0 chr9 117266973 117267039 -25004405 - L2 LINE L2 -3 3310 3244 240 233 128 12 chr9 117267205 117267291 -25004153 - MIR SINE MIR -69 139 44 313 280 96 32 chr9 117267334 117267552 -25003892 + MIR SINE MIR 12 243 -19 194 288 110 0 chr9 117267875 117267948 -25003496 - MIR SINE MIR -108 154 74 433 244 142 36 chr9 117268037 117268054 -25003390 + L1ME4a LINE L1 5592 5606 -515 2086 153 0 0 chr9 117268054 117268361 -25003083 + AluJb SINE Alu 3 309 -3 433 244 142 36 chr9 117268361 117268618 -25002826 + L1ME4a LINE L1 5606 5895 -226 330 291 36 18 chr9 117268678 117268788 -25002656 + L1ME4a LINE L1 5999 6110 -11 2207 91 0 30 chr9 117268890 117269188 -25002256 + AluSc SINE Alu 14 302 -7 436 250 109 8 chr9 117269693 117269821 -25001623 + MIR SINE MIR 13 153 -109 2330 82 34 0 chr9 117269839 117270132 -25001312 - AluSg SINE Alu -7 303 1 182 335 102 20 chr9 117270192 117270389 -25001055 - L2 LINE L2 -11 3261 3049 2050 148 27 0 chr9 117270492 117270790 -25000654 + AluJb SINE Alu 1 306 -6 1982 182 17 0 chr9 117270834 117271191 -25000253 + L1MB5 LINE L1 5812 6174 0 234 291 87 8 chr9 117271288 117271415 -25000029 - L2 LINE L2 -572 2742 2606 251 208 52 13 chr9 117271430 117271507 -24999937 + CT-rich Low_complexity Low_complexity 6 85 0 205 295 76 9 chr9 117271528 117271633 -24999811 - L2 LINE L2 -24 3248 3137 * 411 295 61 26 chr9 117271628 117271822 -24999622 - MIR3 SINE MIR -3 205 2 905 153 0 0 chr9 117272473 117272604 -24998840 + AluSq/x SINE Alu 1 131 -182 2388 162 43 9 chr9 117272622 117273042 -24998402 + Tigger2a DNA MER2_type 1 434 0 1775 160 17 14 chr9 117273044 117273337 -24998107 - AluJb SINE Alu -18 294 1 382 289 94 8 chr9 117273423 117273551 -24997893 - MER5A DNA MER1_type -4 185 47 263 189 279 27 chr9 117274041 117274152 -24997292 + MIR3 SINE MIR 12 150 -58 263 271 84 30 chr9 117274479 117274645 -24996799 - L2 LINE L2 -224 3048 2874 223 299 23 0 chr9 117275173 117275260 -24996184 - MIR SINE MIR -127 135 47 205 284 53 11 chr9 117275752 117275847 -24995597 - MIR SINE MIR -70 138 40 310 233 12 12 chr9 117276414 117276500 -24994944 - MIR3 SINE MIR -42 166 81 187 309 52 0 chr9 117276542 117276639 -24994805 + MIR3 SINE MIR 87 188 -20 384 301 82 27 chr9 117276883 117277029 -24994415 - L2 LINE L2 0 3313 3160 211 213 240 13 chr9 117277092 117277167 -24994277 + MER5B DNA MER1_type 57 148 -30 374 272 132 22 chr9 117277188 117277460 -24993984 - L2 LINE L2 -203 3110 2809 275 249 0 73 chr9 117277478 117277603 -24993841 + MER5B DNA MER1_type 78 176 -2 586 257 56 13 chr9 117277611 117277806 -24993638 + MIR SINE MIR 20 219 -43 213 39 0 0 chr9 117277962 117277988 -24993456 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 421 294 272 28 chr9 117278502 117279227 -24992217 + L2 LINE L2 2340 3266 -6 449 286 52 7 chr9 117279256 117279410 -24992034 - MIR SINE MIR -67 195 35 182 265 20 0 chr9 117279631 117279680 -24991764 - MIR SINE MIR -96 166 117 180 0 0 0 chr9 117279682 117279702 -24991742 + (GAGAA)n Simple_repeat Simple_repeat 5 24 0 2249 93 0 28 chr9 117279753 117280074 -24991370 + AluSx SINE Alu 1 312 0 819 130 8 0 chr9 117280186 117280309 -24991135 + AluSg/x SINE Alu 178 301 -11 538 264 84 50 chr9 117280576 117280815 -24990629 + MIR SINE MIR 4 250 -12 320 297 7 61 chr9 117281214 117281362 -24990082 - MIR SINE MIR -2 260 121 2395 58 0 32 chr9 117281397 117281710 -24989734 - AluY SINE Alu -8 303 1 400 280 45 30 chr9 117281745 117281945 -24989499 + L1ME4a LINE L1 5712 5914 -207 278 340 0 10 chr9 117281953 117282053 -24989391 + GA-rich Low_complexity Low_complexity 4 102 0 2114 111 7 0 chr9 117282076 117282374 -24989070 + AluSq SINE Alu 1 300 -13 246 271 140 28 chr9 117282562 117282669 -24988775 + MIR3 SINE MIR 87 205 -3 380 193 68 0 chr9 117282863 117282951 -24988493 - MIR SINE MIR -65 143 50 216 0 0 0 chr9 117283922 117283946 -24987498 + (A)n Simple_repeat Simple_repeat 1 24 0 576 218 42 67 chr9 117283948 117284113 -24987331 + MER63A DNA MER1_type 46 206 -4 381 276 1 0 chr9 117284135 117284231 -24987213 + MIR SINE MIR 71 165 -61 371 224 17 60 chr9 117284264 117284380 -24987064 - L2 LINE L2 -10 3303 3193 184 200 0 44 chr9 117284481 117284526 -24986918 + MIR SINE MIR 104 146 -62 2208 95 0 0 chr9 117284588 117284884 -24986560 + AluSc SINE Alu 5 300 -9 185 300 0 0 chr9 117284900 117284950 -24986494 - MIR SINE MIR -109 153 104 308 300 11 0 chr9 117285537 117285627 -24985817 - L3b LINE CR1 -197 1386 1296 289 264 47 31 chr9 117285869 117285998 -24985446 + MIR3 SINE MIR 61 191 -17 26 0 0 0 chr9 117286748 117286774 -24984670 + GC_rich Low_complexity Low_complexity 1 26 0 2101 75 23 45 chr9 117286973 117287281 -24984163 + AluSx SINE Alu 12 312 0 212 245 196 0 chr9 117287360 117287462 -24983982 - MIR SINE MIR 0 262 141 180 358 25 0 chr9 117287478 117287559 -24983885 - MIR3 SINE MIR -49 159 77 188 218 18 18 chr9 117287623 117287678 -24983766 + MIR SINE MIR 47 101 -107 222 256 116 12 chr9 117288388 117288474 -24982970 + MIR SINE MIR 20 114 -148 1733 187 156 25 chr9 117288669 117289112 -24982332 - MLT1D LTR MaLR -2 503 3 342 206 0 0 chr9 117289114 117289177 -24982267 - MIR SINE MIR -63 145 83 653 274 62 46 chr9 117289670 117289949 -24981495 + LTR16A1 LTR ERVL 151 442 -15 255 282 146 0 chr9 117291711 117291814 -24979630 - MIR SINE MIR -139 123 6 232 227 30 15 chr9 117291908 117291974 -24979470 - L3 LINE CR1 -88 1489 1423 182 269 93 9 chr9 117292278 117292386 -24979058 - L2 LINE L2 -189 3083 2967 321 265 223 46 chr9 117292561 117292821 -24978623 + MER102b DNA MER1_type 33 338 -3 452 322 73 11 chr9 117292825 117293002 -24978442 + MIR SINE MIR 18 205 -57 1836 160 10 13 chr9 117293245 117293558 -24977886 - AluSx SINE Alu 0 312 1 643 157 52 22 chr9 117293560 117293694 -24977750 + MIR SINE MIR 97 234 -28 468 238 97 15 chr9 117294272 117294409 -24977035 - MIR SINE MIR -62 146 35 234 329 110 18 chr9 117295513 117295677 -24975767 + MIR SINE MIR 80 258 -4 569 200 37 37 chr9 117295745 117295880 -24975564 - MIR SINE MIR -36 226 92 2052 174 35 0 chr9 117296890 117297328 -24974116 + MLT2B1 LTR ERVL 1 511 -9 270 293 153 53 chr9 117297376 117297697 -24973747 - L2 LINE L2 -22 3250 2898 413 284 153 22 chr9 117297787 117298055 -24973389 + L2 LINE L2 2842 3144 -169 686 333 133 10 chr9 117298178 117298563 -24972881 + L2 LINE L2 2882 3313 0 317 273 279 0 chr9 117299092 117299253 -24972191 + MIR SINE MIR 30 235 -27 599 295 37 28 chr9 117299837 117300054 -24971390 - MIR SINE MIR -21 241 23 307 294 28 9 chr9 117300646 117300755 -24970689 - MIR SINE MIR -118 144 34 1278 252 82 20 chr9 117302216 117302669 -24968775 + Charlie4a DNA MER1_type 26 506 -2 251 298 214 21 chr9 117303095 117303197 -24968247 + L2 LINE L2 2603 2684 -630 1478 143 104 14 chr9 117303197 117303476 -24967968 + AluJo SINE Alu 1 304 -8 251 298 214 21 chr9 117303476 117303662 -24967782 + L2 LINE L2 2684 2947 -367 2178 147 131 8 chr9 117304537 117304918 -24966526 + MSTA LTR MaLR 1 428 0 419 311 68 6 chr9 117304993 117305170 -24966274 - MIR SINE MIR -70 192 5 241 316 90 17 chr9 117306072 117306249 -24965195 - MIR3 SINE MIR -15 193 4 951 260 241 12 chr9 117306667 117307196 -24964248 + L2 LINE L2 2657 3308 -5 777 281 50 13 chr9 117307304 117307542 -24963902 + MIR SINE MIR 16 262 0 622 252 17 113 chr9 117307563 117307908 -24963536 - L2 LINE L2 -36 3236 2925 503 232 16 8 chr9 117307931 117308056 -24963388 - MIR SINE MIR -109 153 28 247 276 26 13 chr9 117308600 117308676 -24962768 - MIR SINE MIR -68 140 64 345 292 83 21 chr9 117308966 117309110 -24962334 - MIR SINE MIR -8 254 102 1934 151 0 3 chr9 117310734 117311033 -24960411 + AluSx SINE Alu 1 298 -14 315 246 63 63 chr9 117311197 117311339 -24960105 + L2 LINE L2 3156 3297 -16 487 166 141 14 chr9 117311343 117311474 -24959970 - MIR SINE MIR -67 141 1 553 298 36 6 chr9 117312134 117312302 -24959142 - MER5B DNA MER1_type -5 173 1 267 336 53 0 chr9 117312332 117312445 -24958999 + L2 LINE L2 3134 3252 -20 443 289 4 77 chr9 117312797 117313032 -24958412 + L2 LINE L2 3077 3294 -19 459 231 131 44 chr9 117313593 117313753 -24957691 - Charlie8 DNA MER1_type -2199 218 45 411 107 0 0 chr9 117313769 117313844 -24957600 + (CA)n Simple_repeat Simple_repeat 2 76 0 183 156 0 0 chr9 117314039 117314071 -24957373 + CT-rich Low_complexity Low_complexity 1 32 0 212 250 0 50 chr9 117314100 117314160 -24957284 - MIR SINE MIR -110 152 96 183 133 44 0 chr9 117314207 117314252 -24957192 - MIR SINE MIR -75 133 87 252 261 109 11 chr9 117314710 117314802 -24956642 - MIR SINE MIR -142 120 20 1356 210 30 4 chr9 117315168 117315439 -24956005 + AluJo SINE Alu 4 281 -31 220 263 18 0 chr9 117315591 117315648 -24955796 - MIR SINE MIR -64 144 87 197 250 17 33 chr9 117316078 117316138 -24955306 - L2 LINE L2 -1 3271 3213 1996 115 7 14 chr9 117316280 117316575 -24954869 + AluSx SINE Alu 1 293 -19 487 279 46 30 chr9 117316672 117316869 -24954575 - MIR SINE MIR -55 207 8 2084 116 3 3 chr9 117317162 117317465 -24953979 - AluSx SINE Alu -9 303 1 209 374 65 22 chr9 117317553 117317692 -24953752 + MIR SINE MIR 3 150 -58 211 321 0 0 chr9 117317889 117317942 -24953502 + L2 LINE L2 3207 3259 -13 841 156 43 32 chr9 117318495 117318681 -24952763 - MER53 DNA DNA -1 188 1 341 310 28 21 chr9 117319390 117319532 -24951912 + MIR SINE MIR 48 190 -72 240 220 34 17 chr9 117319587 117319646 -24951798 - MIR SINE MIR -63 145 86 757 179 130 58 chr9 117320751 117320974 -24950470 + MIR SINE MIR 14 252 -10 221 185 56 0 chr9 117321242 117321296 -24950148 - MIR SINE MIR -108 154 98 248 276 20 31 chr9 117322229 117322327 -24949117 - MIR SINE MIR -136 126 30 431 240 10 0 chr9 117322456 117322556 -24948888 - MIR SINE MIR -116 146 46 250 150 0 0 chr9 117322580 117322620 -24948824 + MER3 DNA MER1_type 23 62 -147 359 198 97 10 chr9 117322625 117322738 -24948706 - Charlie5 DNA MER1_type -2489 123 1 492 319 77 35 chr9 117322810 117323352 -24948092 + L2 LINE L2 2481 3066 -206 215 214 0 0 chr9 117323498 117323540 -24947904 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 280 270 52 70 chr9 117323789 117323904 -24947540 - MIR3 SINE MIR -47 161 49 228 342 60 36 chr9 117324005 117324306 -24947138 + L1MC4 LINE L1 4358 4665 -1481 * 2150 156 69 41 chr9 117324301 117324781 -24946663 + L1MC2 LINE L1 5837 6333 -11 2370 107 0 0 chr9 117324781 117325091 -24946353 + AluSx SINE Alu 1 310 -2 2150 156 69 41 chr9 117325091 117325103 -24946341 + L1MC2 LINE L1 6333 6343 -1 45 75 0 0 chr9 117325104 117325198 -24946246 + AT_rich Low_complexity Low_complexity 1 94 0 547 290 73 37 chr9 117325247 117325703 -24945741 + L1MC4 LINE L1 4724 5219 -943 1141 218 92 48 chr9 117325703 117326061 -24945383 + MLT1A2 LTR MaLR 1 374 0 547 290 73 37 chr9 117326061 117326270 -24945174 + L1MC4 LINE L1 5219 5419 -743 1179 178 0 5 chr9 117326270 117326461 -24944983 + AluJb SINE Alu 85 274 -38 535 223 61 20 chr9 117326515 117326663 -24944781 + L1MC4 LINE L1 5411 5564 -2244 2611 62 3 0 chr9 117326676 117326985 -24944459 - AluY SINE Alu -1 310 1 401 225 195 23 chr9 117326990 117327896 -24943548 + L1MC4 LINE L1 5625 6621 -1187 4076 136 26 52 chr9 117327922 117328153 -24943291 + Tigger2 DNA MER2_type 1 236 -2482 2236 109 7 0 chr9 117328153 117328447 -24942997 - AluSx SINE Alu -16 296 1 4076 136 26 52 chr9 117328447 117328480 -24942964 + Tigger2 DNA MER2_type 236 268 -2450 1995 142 3 14 chr9 117328480 117328775 -24942669 - AluSx SINE Alu -20 292 1 4076 136 26 52 chr9 117328775 117329286 -24942158 + Tigger2 DNA MER2_type 268 757 -1961 1268 149 66 4 chr9 117329341 117329583 -24941861 + Tigger2 DNA MER2_type 2452 2708 -10 1721 226 64 0 chr9 117329583 117330007 -24941437 + L1MC4 LINE L1 6679 7129 -913 2254 208 116 25 chr9 117330046 117330742 -24940702 + L1MC4 LINE L1 7226 7996 -46 2071 146 130 3 chr9 117330742 117331120 -24940324 + MSTB LTR MaLR 1 426 0 2254 208 116 25 chr9 117331120 117331172 -24940272 + L1MC4 LINE L1 7996 8042 0 183 42 0 0 chr9 117331177 117331201 -24940243 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2018 206 38 22 chr9 117331450 117331945 -24939499 - MLT1D LTR MaLR -2 503 1 1680 174 34 39 chr9 117332012 117332369 -24939075 - THE1A LTR MaLR 0 355 1 247 205 90 0 chr9 117332595 117332673 -24938771 + L1ME LINE L1 5764 5848 -273 24 0 0 0 chr9 117333017 117333041 -24938403 + AT_rich Low_complexity Low_complexity 1 24 0 1547 109 0 15 chr9 117333259 117333484 -24937960 - AluSg/x SINE Alu 0 310 88 802 136 71 6 chr9 117333607 117333776 -24937668 - AluSx SINE Alu -124 188 9 346 290 49 19 chr9 117334316 117334478 -24936966 + L1ME4a LINE L1 5728 5894 -227 2289 151 61 9 chr9 117334535 117334960 -24936484 + L1MB7 LINE L1 5722 6168 -16 587 227 211 9 chr9 117335696 117335913 -24935531 + MIR SINE MIR 7 261 -1 409 181 245 11 chr9 117336061 117336155 -24935289 + MSTC LTR MaLR 1 116 -312 336 143 0 0 chr9 117336165 117336235 -24935209 + (TC)n Simple_repeat Simple_repeat 1 70 0 341 217 33 0 chr9 117336236 117336328 -24935116 + MSTC LTR MaLR 300 394 -2 322 258 0 0 chr9 117336330 117336396 -24935048 + MER5A DNA MER1_type 31 96 -93 250 136 0 23 chr9 117336396 117336440 -24935004 + MLT1G LTR MaLR 1 43 -552 1009 230 115 53 chr9 117336483 117336918 -24934526 + MLT1C LTR MaLR 6 467 0 823 285 137 17 chr9 117336918 117337384 -24934060 + MLT1G LTR MaLR 51 573 -17 393 226 15 83 chr9 117338260 117338393 -24933051 - MIR SINE MIR 0 262 139 213 158 35 22 chr9 117338903 117338967 -24932477 + MIR SINE MIR 57 123 -85 284 244 103 0 chr9 117339084 117339162 -24932282 - MIR SINE MIR -78 184 99 432 312 56 40 chr9 117339689 117339939 -24931505 + MIR SINE MIR 8 261 -1 889 246 13 22 chr9 117340328 117340552 -24930892 + MIR SINE MIR 38 259 -3 23 0 0 0 chr9 117340653 117340676 -24930768 + AT_rich Low_complexity Low_complexity 1 23 0 209 190 35 35 chr9 117341344 117341402 -24930042 - MIR SINE MIR -55 153 96 2460 140 47 2 chr9 117341576 117341977 -24929467 - MSTB LTR MaLR -7 419 1 4486 222 156 18 chr9 117342121 117343744 -24927700 + L1M4 LINE L1 3337 5183 -963 914 179 25 6 chr9 117343744 117343906 -24927538 - AluJb SINE Alu -9 303 139 235 211 90 64 chr9 117343914 117343968 -24927476 + L1M4 LINE L1 5175 5226 -920 1951 148 34 10 chr9 117343968 117344266 -24927178 + AluJo SINE Alu 1 305 -7 235 211 90 64 chr9 117344266 117344302 -24927142 + L1M4 LINE L1 5226 5260 -886 2161 125 83 0 chr9 117344302 117344639 -24926805 - MER47A DNA MER2_type -1 365 1 235 211 90 64 chr9 117344639 117344703 -24926741 + L1M4 LINE L1 5260 5334 -812 2008 222 82 125 chr9 117344708 117345075 -24926369 + L1MC4a LINE L1 6061 6442 -1366 2046 135 10 7 chr9 117345075 117345372 -24926072 + AluSx SINE Alu 1 298 -14 2008 222 82 125 chr9 117345372 117346163 -24925281 + L1MC4a LINE L1 6442 7149 -659 2298 97 3 0 chr9 117346163 117346461 -24924983 + AluSx SINE Alu 1 299 -13 2008 222 82 125 chr9 117346461 117346590 -24924854 + L1MC4a LINE L1 7149 7282 -526 668 304 65 0 chr9 117347369 117347583 -24923861 - MIR SINE MIR -6 256 29 188 272 86 25 chr9 117347591 117347672 -24923772 - L2 LINE L2 -60 3253 3168 2153 116 3 20 chr9 117347705 117347999 -24923445 + AluSx SINE Alu 1 289 -23 576 39 51 0 chr9 117348387 117348465 -24922979 + MSTB LTR MaLR 1 82 -344 536 286 45 22 chr9 117348790 117348968 -24922476 + MIR SINE MIR 69 250 -12 432 324 66 21 chr9 117349794 117350035 -24921409 - L1ME4a LINE L1 -72 6049 5798 753 283 76 81 chr9 117350096 117350503 -24920941 + L2 LINE L2 2851 3255 -17 354 240 178 14 chr9 117350899 117351045 -24920399 - MIR3 SINE MIR -15 193 24 310 308 39 0 chr9 117351063 117351167 -24920277 + MIR SINE MIR 39 146 -62 588 315 60 9 chr9 117351179 117351411 -24920033 + MIR SINE MIR 5 248 -14 1228 147 87 28 chr9 117351987 117352239 -24919205 + L1MD3 LINE L1 7729 7995 0 485 284 47 75 chr9 117352396 117352517 -24918927 + MIR SINE MIR 15 138 -124 968 98 0 0 chr9 117352517 117352650 -24918794 + L1MA2 LINE L1 6172 6304 0 485 284 47 75 chr9 117352650 117352782 -24918662 + MIR SINE MIR 138 261 -1 2329 116 9 3 chr9 117352809 117353155 -24918289 - MLT1A1 LTR MaLR 0 365 18 465 19 0 0 chr9 117353341 117353395 -24918049 + (ATG)n Simple_repeat Simple_repeat 1 54 0 950 140 18 10 chr9 117353400 117353568 -24917876 - MLT1A1 LTR MaLR 0 365 224 283 275 9 73 chr9 117353568 117353677 -24917767 - MIR SINE MIR -90 118 17 717 257 56 23 chr9 117354184 117354398 -24917046 + MIR SINE MIR 28 248 -14 266 270 48 48 chr9 117355077 117355203 -24916241 + MIR3 SINE MIR 53 178 -30 378 285 57 76 chr9 117355809 117356072 -24915372 - L2 LINE L2 -57 3215 2958 190 220 20 0 chr9 117356517 117356567 -24914877 - MIR SINE MIR -44 218 168 745 201 43 41 chr9 117356583 117356807 -24914637 + MIR SINE MIR 41 262 0 740 263 108 17 chr9 117357460 117357692 -24913752 + MIR SINE MIR 10 262 0 457 280 60 15 chr9 117358001 117358201 -24913243 + LTR16A LTR ERVL 106 314 -136 1545 216 106 24 chr9 117358250 117358676 -24912768 - MLT1D LTR MaLR -17 488 28 605 254 140 26 chr9 117359765 117359993 -24911451 - MIR SINE MIR -7 255 2 302 323 10 10 chr9 117360002 117360101 -24911343 + MIR SINE MIR 46 144 -64 474 261 33 62 chr9 117360285 117360496 -24910948 + MLT1L LTR MaLR 214 418 -197 551 276 95 70 chr9 117360678 117361268 -24910176 + L2 LINE L2 2633 3298 -15 584 292 33 41 chr9 117361299 117361542 -24909902 - MIR SINE MIR -2 260 20 360 297 14 58 chr9 117361976 117362114 -24909330 + MIR SINE MIR 60 191 -71 275 299 161 17 chr9 117363063 117363237 -24908207 + L2 LINE L2 2914 3112 -160 1315 150 9 0 chr9 117363480 117363706 -24907738 + L1M3 LINE L1 5442 5669 -502 180 226 113 16 chr9 117363706 117363768 -24907676 - MIR SINE MIR -193 69 2 1870 174 0 10 chr9 117364498 117364796 -24906648 - AluJo SINE Alu -17 295 1 651 294 54 72 chr9 117364867 117365258 -24906186 + L2 LINE L2 2899 3282 -31 345 240 120 16 chr9 117365291 117365416 -24906028 + MIR SINE MIR 113 250 -12 1078 154 0 0 chr9 117366669 117366831 -24904613 + AluSg/x SINE Alu 134 295 -15 2532 197 34 4 chr9 117367541 117368070 -24903374 + MER68 LTR ERV1 10 554 -8 296 262 116 70 chr9 117368124 117368296 -24903148 - MIR SINE MIR -10 252 73 2304 111 0 13 chr9 117368309 117368625 -24902819 + AluSx SINE Alu 1 312 0 1378 235 43 9 chr9 117368855 117369200 -24902244 + MLT1A2 LTR MaLR 1 357 -17 747 282 52 11 chr9 117369207 117369554 -24901890 + L1ME4a LINE L1 5761 6121 0 240 238 159 0 chr9 117370246 117370309 -24901135 - L2 LINE L2 -3 3269 3197 332 317 92 6 chr9 117370966 117371130 -24900314 + MIR SINE MIR 73 250 -12 192 273 0 0 chr9 117371423 117371478 -24899966 - MIR3 SINE MIR -53 155 101 397 284 72 31 chr9 117372163 117372357 -24899087 + MIR3 SINE MIR 7 208 0 341 247 0 0 chr9 117372904 117372977 -24898467 + MIR SINE MIR 75 147 -115 362 265 85 58 chr9 117373853 117373937 -24897507 + MIR SINE MIR 63 143 -119 2186 109 0 3 chr9 117373937 117374231 -24897213 + AluSx SINE Alu 1 293 -19 362 265 85 58 chr9 117374231 117374253 -24897191 + MIR SINE MIR 143 163 -99 1491 190 19 48 chr9 117374253 117374563 -24896881 + AluJo SINE Alu 3 303 -9 362 265 85 58 chr9 117374563 117374644 -24896800 + MIR SINE MIR 163 256 -6 557 231 27 81 chr9 117375226 117375412 -24896032 + MIR SINE MIR 14 189 -73 471 27 13 27 chr9 117375414 117375489 -24895955 + (TG)n Simple_repeat Simple_repeat 2 75 0 * 491 0 17 0 chr9 117375488 117375547 -24895897 + (TA)n Simple_repeat Simple_repeat 1 60 0 25 0 0 0 chr9 117375708 117375733 -24895711 + AT_rich Low_complexity Low_complexity 1 25 0 395 291 58 53 chr9 117375792 117376226 -24895218 - L1MC4a LINE L1 -97 6024 5597 548 298 24 54 chr9 117376644 117376849 -24894595 + MIR SINE MIR 64 262 0 203 270 84 13 chr9 117376883 117377006 -24894438 - MIR SINE MIR -60 148 20 251 292 207 20 chr9 117377310 117377641 -24893803 + L2 LINE L2 2563 2963 -309 576 106 0 0 chr9 117377981 117378066 -24893378 + (CA)n Simple_repeat Simple_repeat 1 85 0 180 191 24 48 chr9 117378228 117378270 -24893174 + L2 LINE L2 3272 3312 -1 893 293 83 40 chr9 117380554 117381111 -24890333 + L1ME4a LINE L1 5384 5964 -157 1633 152 0 94 chr9 117381232 117381561 -24889883 + AluJb SINE Alu 1 298 -4 1917 138 0 23 chr9 117381596 117381900 -24889544 + AluJo SINE Alu 1 297 -15 194 196 43 0 chr9 117382411 117382457 -24888987 - L2 LINE L2 -12 3260 3213 309 250 14 14 chr9 117382504 117382576 -24888868 + MIR SINE MIR 22 93 -169 338 131 49 16 chr9 117382903 117382964 -24888480 - MIR SINE MIR -106 156 94 494 231 63 28 chr9 117382972 117383115 -24888329 - MIR SINE MIR -105 157 10 580 217 118 59 chr9 117383171 117383374 -24888070 + MIR SINE MIR 47 261 -1 249 229 124 9 chr9 117385251 117385356 -24886088 - MIR SINE MIR -133 129 13 195 308 0 0 chr9 117385522 117385574 -24885870 - MER5A DNA MER1_type 0 189 138 210 143 0 0 chr9 117386045 117386080 -24885364 + (A)n Simple_repeat Simple_repeat 1 35 0 387 291 3 26 chr9 117386353 117386526 -24884918 - MIR SINE MIR -45 217 52 487 276 98 55 chr9 117386651 117386905 -24884539 - L2 LINE L2 -1 3312 3048 816 127 242 0 chr9 117387503 117387668 -24883776 + L1MC1 LINE L1 6129 6333 0 418 247 144 14 chr9 117389556 117389702 -24881742 - MIR3 SINE MIR -9 199 35 180 0 0 0 chr9 117390055 117390075 -24881369 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 324 0 0 0 chr9 117390080 117390116 -24881328 + (CA)n Simple_repeat Simple_repeat 2 37 0 479 203 102 8 chr9 117390195 117390313 -24881131 + L1MD3 LINE L1 7710 7838 -157 312 299 43 12 chr9 117392137 117392253 -24879191 - MIR3 SINE MIR -32 176 60 248 287 64 43 chr9 117392446 117392540 -24878904 + L2 LINE L2 3162 3257 -56 214 281 44 54 chr9 117392567 117392704 -24878740 - MIR SINE MIR -69 139 14 36 0 0 0 chr9 117393236 117393272 -24878172 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 117394033 117394055 -24877389 + GC_rich Low_complexity Low_complexity 1 22 0 999 137 158 0 chr9 117394642 117394832 -24876612 + L1MD2 LINE L1 6138 6357 -2 267 31 0 0 chr9 117395006 117395038 -24876406 + (CA)n Simple_repeat Simple_repeat 2 33 0 411 21 0 0 chr9 117395217 117395265 -24876179 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 255 313 60 0 chr9 117395273 117395356 -24876088 - L2 LINE L2 -5 3308 3221 1405 178 63 3 chr9 117396632 117396919 -24874525 - AluJb SINE Alu -8 304 1 275 270 170 30 chr9 117396959 117397091 -24874353 + MIR SINE MIR 22 146 -62 696 281 126 4 chr9 117397348 117397438 -24874006 - MIR SINE MIR 0 262 184 201 74 0 0 chr9 117397438 117397465 -24873979 + (CAT)n Simple_repeat Simple_repeat 1 27 0 696 281 126 4 chr9 117397465 117397605 -24873839 - MIR SINE MIR -78 184 4 490 307 53 23 chr9 117398271 117398481 -24872963 + MIR SINE MIR 23 242 -20 236 370 0 0 chr9 117398551 117398624 -24872820 + L2 LINE L2 3193 3265 -7 417 274 48 16 chr9 117398779 117398903 -24872541 - MIR SINE MIR -48 214 87 290 213 139 37 chr9 117399256 117399364 -24872080 - L2 LINE L2 -1 3271 3153 315 291 86 26 chr9 117399560 117399630 -24871814 + MIR SINE MIR 86 150 -112 1980 108 3 20 chr9 117399630 117399927 -24871517 + AluSx SINE Alu 1 292 -20 315 291 86 26 chr9 117399927 117400007 -24871437 + MIR SINE MIR 150 245 -17 259 281 58 50 chr9 117400267 117400388 -24871056 + MIR3 SINE MIR 82 203 -5 322 158 0 35 chr9 117400885 117400942 -24870502 - L2 LINE L2 -5 3267 3213 1245 292 76 9 chr9 117401034 117401466 -24869978 - MLT1E LTR MaLR 0 593 133 283 91 68 0 chr9 117401574 117401618 -24869826 - L2 LINE L2 -5 3308 3262 467 236 65 8 chr9 117401678 117401801 -24869643 - MLT1E LTR MaLR -432 161 32 464 329 59 41 chr9 117401826 117402184 -24869260 - L2 LINE L2 -160 3112 2739 420 259 188 18 chr9 117402464 117402634 -24868810 + MIR SINE MIR 36 234 -28 2250 115 51 51 chr9 117402637 117402658 -24868786 - MLT1B LTR MaLR 0 390 370 2594 125 42 33 chr9 117402658 117402887 -24868557 - MSTA LTR MaLR 0 428 192 2089 107 3 10 chr9 117402887 117403187 -24868257 - AluSx SINE Alu -14 298 1 2594 125 42 33 chr9 117403187 117403381 -24868063 - MSTA LTR MaLR -236 192 1 2250 115 51 51 chr9 117403381 117403749 -24867695 - MLT1B LTR MaLR -19 371 1 350 219 180 31 chr9 117404694 117404822 -24866622 - MIR SINE MIR -13 249 103 252 262 101 40 chr9 117404936 117405085 -24866359 - L2 LINE L2 -168 3104 2947 240 35 0 0 chr9 117405155 117405184 -24866260 + (T)n Simple_repeat Simple_repeat 1 29 0 1010 292 7 3 chr9 117405200 117405508 -24865936 + L1ME LINE L1 5372 5680 -490 304 259 142 48 chr9 117405510 117405721 -24865723 - MLT1H LTR MaLR 0 549 293 2940 151 39 86 chr9 117405879 117406178 -24865266 - L1MB8 LINE L1 -2 6176 5864 1613 155 57 7 chr9 117406178 117406475 -24864969 - AluSx SINE Alu 0 312 1 1751 178 0 25 chr9 117406475 117406795 -24864649 - AluJo SINE Alu 0 312 1 2940 151 39 86 chr9 117406795 117407144 -24864300 - L1MB8 LINE L1 -312 5866 5558 244 318 78 39 chr9 117407515 117407644 -24863800 - MIR3 SINE MIR -33 175 42 3085 224 83 36 chr9 117407837 117408612 -24862832 + MER21B LTR ERV1 1 811 -52 243 328 0 0 chr9 117408640 117408704 -24862740 - L2 LINE L2 -4 3309 3246 507 279 99 59 chr9 117408706 117408978 -24862466 - L1ME4a LINE L1 -148 5973 5691 1688 155 31 138 chr9 117409217 117409539 -24861905 - MLT1C LTR MaLR 0 467 221 2082 125 0 3 chr9 117409539 117409852 -24861592 + AluSx SINE Alu 1 312 0 1688 155 31 138 chr9 117409852 117410052 -24861392 - MLT1C LTR MaLR -246 221 1 646 122 10 20 chr9 117410084 117410182 -24861262 + FLAM_A SINE Alu 27 123 -19 675 277 22 11 chr9 117410484 117410668 -24860776 - MLT1I LTR MaLR 0 409 224 764 200 107 68 chr9 117410672 117410952 -24860492 - LTR50 LTR ERVL -19 776 486 398 241 280 19 chr9 117410987 117411194 -24860250 - LTR50 LTR ERVL -496 299 39 543 211 232 0 chr9 117411523 117411665 -24859779 + MER5A DNA MER1_type 9 183 -6 219 36 0 0 chr9 117411726 117411754 -24859690 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1746 209 56 31 chr9 117412049 117412498 -24858946 - MLT1C LTR MaLR 0 467 8 268 290 129 11 chr9 117413012 117413105 -24858339 + L2 LINE L2 3146 3249 -23 307 298 16 32 chr9 117413108 117413232 -24858212 - LTR16C LTR ERVL -7 484 363 388 179 232 80 chr9 117413241 117413392 -24858052 - MER96 DNA MER1_type? 0 175 2 281 278 38 83 chr9 117413397 117413530 -24857914 - LTR16A1 LTR ERVL -134 323 197 299 234 0 13 chr9 117413720 117413797 -24857647 + (TGAA)n Simple_repeat Simple_repeat 1 76 0 732 152 0 0 chr9 117414507 117414612 -24856832 + FLAM_C SINE Alu 14 118 -25 183 329 100 0 chr9 117414655 117414725 -24856719 - L2 LINE L2 0 3313 3237 494 249 6 0 chr9 117414819 117414992 -24856452 + (TGGA)n Simple_repeat Simple_repeat 1 174 0 687 282 59 109 chr9 117415028 117415606 -24855838 + MLT1K LTR MaLR 30 578 -10 186 191 0 0 chr9 117415623 117415665 -24855779 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 273 346 38 15 chr9 117416128 117416261 -24855183 - L2 LINE L2 -210 3062 2927 1221 159 0 95 chr9 117416344 117416497 -24854947 + AluJo SINE Alu 1 120 -192 1819 161 13 0 chr9 117416497 117416795 -24854649 + AluSq SINE Alu 1 302 -11 1221 159 0 95 chr9 117416795 117416905 -24854539 + AluJo SINE Alu 120 239 -73 244 276 18 44 chr9 117417067 117417197 -24854247 + MER5B DNA MER1_type 42 179 -10 376 313 25 95 chr9 117417220 117417536 -24853908 - MLT1J LTR MaLR -61 450 157 237 264 52 130 chr9 117417656 117417887 -24853557 - L2 LINE L2 -629 2685 2473 2316 82 3 3 chr9 117418117 117418422 -24853022 + AluSp SINE Alu 1 305 -8 478 281 233 0 chr9 117418677 117418887 -24852557 - MIR SINE MIR 0 262 4 1704 154 20 17 chr9 117419014 117419313 -24852131 + AluJb SINE Alu 1 300 -12 609 233 0 0 chr9 117419612 117419728 -24851716 + FLAM_C SINE Alu 23 138 -5 1838 153 0 3 chr9 117419729 117420023 -24851421 + AluJo SINE Alu 2 294 -18 803 232 0 18 chr9 117421004 117421172 -24850272 - MIR SINE MIR 0 262 98 2137 218 68 67 chr9 117421172 117421878 -24849566 + L1M4 LINE L1 39 745 -5651 2166 157 19 16 chr9 117421981 117422345 -24849099 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr9 117422367 117422388 -24849056 + AT_rich Low_complexity Low_complexity 1 21 0 1379 218 76 41 chr9 117422389 117422805 -24848639 + L1M4 LINE L1 746 1183 -5213 2058 110 0 3 chr9 117422805 117423106 -24848338 + AluSg SINE Alu 1 300 -10 1379 218 76 41 chr9 117423106 117423175 -24848269 + L1M4 LINE L1 1183 1248 -5148 359 162 31 39 chr9 117423158 117423286 -24848158 + L1M4 LINE L1 2991 5542 -711 * 836 212 3 86 chr9 117423284 117423576 -24847868 + L1ME LINE L1 3673 3940 -2206 800 133 0 22 chr9 117423583 117423718 -24847726 - FLAM_C SINE Alu -1 142 11 210 37 0 0 chr9 117423754 117423781 -24847663 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2217 112 49 25 chr9 117423816 117424182 -24847262 - THE1C LTR MaLR 0 375 1 615 239 102 18 chr9 117424615 117424782 -24846662 + FRAM SINE Alu 1 174 -2 431 60 12 48 chr9 117424782 117424865 -24846579 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 962 181 88 74 chr9 117424865 117425185 -24846259 + L1ME LINE L1 4044 4364 -1782 791 210 0 0 chr9 117425195 117425338 -24846106 - FLAM_C SINE Alu 0 143 1 2392 210 63 9 chr9 117425365 117426013 -24845431 + L1ME LINE L1 4385 5067 -1079 1515 180 80 35 chr9 117426025 117426421 -24845023 + MLT1C LTR MaLR 6 390 0 1023 218 58 20 chr9 117426424 117426821 -24844623 + L1ME LINE L1 5069 5477 -689 1357 182 29 63 chr9 117426828 117427195 -24844249 + MLT1A1 LTR MaLR 1 427 -1 836 189 6 13 chr9 117427206 117427365 -24844079 + MLT1A1 LTR MaLR 1 158 -207 2092 111 0 0 chr9 117427366 117427655 -24843789 + AluSx SINE Alu 2 290 -22 1197 164 44 32 chr9 117427657 117427907 -24843537 + AluJo SINE Alu 57 309 -3 415 292 44 15 chr9 117427988 117428125 -24843319 - MIR SINE MIR -102 160 20 317 339 22 97 chr9 117428725 117428870 -24842574 + L3 LINE CR1 1361 1485 -92 2333 61 27 0 chr9 117428870 117429167 -24842277 + AluSx SINE Alu 1 305 -7 317 339 22 97 chr9 117429167 117429248 -24842196 + L3 LINE CR1 1485 1570 -7 1807 137 0 4 chr9 117429275 117429546 -24841898 - AluSx SINE Alu -9 303 34 2194 153 16 16 chr9 117429557 117429923 -24841521 + MSTB LTR MaLR 1 366 -60 635 51 25 0 chr9 117429924 117430003 -24841441 + AluSg/x SINE Alu 213 293 -17 511 110 0 0 chr9 117430003 117430076 -24841368 + MSTB LTR MaLR 356 428 0 892 162 0 71 chr9 117430431 117430628 -24840816 + AluSg/x SINE Alu 117 299 -11 300 152 0 0 chr9 117430872 117430918 -24840526 - MER33 DNA MER1_type 0 363 318 1693 159 3 49 chr9 117430918 117431307 -24840137 - AluJo SINE Alu 0 374 1 1521 165 21 0 chr9 117431307 117431597 -24839847 - MER33 DNA MER1_type -39 285 1 1981 106 4 0 chr9 117431632 117431907 -24839537 + AluSx SINE Alu 24 299 -13 209 33 33 0 chr9 117432373 117432403 -24839041 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1645 166 7 7 chr9 117432405 117432689 -24838755 - AluJo SINE Alu -28 284 1 313 167 269 9 chr9 117433576 117433684 -24837760 + MIR SINE MIR 113 248 -14 183 152 0 30 chr9 117433657 117433690 -24837754 + L2 LINE L2 3267 3298 -15 * 268 336 9 9 chr9 117434014 117434130 -24837314 - L1ME LINE L1 -432 5689 5574 346 272 156 42 chr9 117434148 117434398 -24837046 - L1ME LINE L1 -911 5448 5257 1935 103 33 0 chr9 117434408 117434711 -24836733 - AluSx SINE Alu 0 312 1 195 42 0 0 chr9 117434751 117434775 -24836669 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 420 280 40 16 chr9 117434847 117434972 -24836472 - L2 LINE L2 0 3272 3145 203 393 11 22 chr9 117435233 117435411 -24836033 - L2 LINE L2 -434 2880 2705 432 230 52 3 chr9 117436697 117436820 -24834624 - MLT1F LTR MaLR -127 468 279 469 274 83 30 chr9 117436827 117436995 -24834449 + MLT1G1 LTR MaLR 152 328 -267 1426 165 19 19 chr9 117437127 117437394 -24834050 + AluJo SINE Alu 2 268 -44 254 32 0 0 chr9 117437395 117437426 -24834018 + (GA)n Simple_repeat Simple_repeat 2 32 0 371 113 16 0 chr9 117437426 117437488 -24833956 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 188 119 0 24 chr9 117437537 117437579 -24833865 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 835 224 0 0 chr9 117437625 117437781 -24833663 + MER58B DNA MER1_type 183 338 -3 197 343 28 28 chr9 117437796 117437904 -24833540 - MIR SINE MIR -80 128 21 719 288 206 6 chr9 117438129 117438469 -24832975 + MLT1K LTR MaLR 20 427 -161 234 62 0 0 chr9 117439007 117439039 -24832405 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 479 195 0 11 chr9 117439162 117439249 -24832195 - FAM SINE Alu -2 183 98 270 286 12 24 chr9 117439254 117439338 -24832106 - MER5A DNA MER1_type -22 167 85 249 264 100 55 chr9 117439258 117439368 -24832076 + MER5B DNA MER1_type 27 141 -37 * 825 91 0 66 chr9 117439368 117439489 -24831955 - FLAM_C SINE Alu -17 126 14 314 282 46 61 chr9 117439675 117439806 -24831638 - MIR3 SINE MIR -3 205 77 185 0 40 0 chr9 117439885 117439910 -24831534 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr9 117439913 117439945 -24831499 + AT_rich Low_complexity Low_complexity 1 32 0 1520 142 9 85 chr9 117439945 117440263 -24831181 - AluJo SINE Alu -18 294 1 182 161 0 0 chr9 117441216 117441247 -24830197 - L2 LINE L2 -1 3271 3241 283 271 144 0 chr9 117441458 117441576 -24829868 + MLT1L LTR MaLR 111 245 -370 873 122 0 0 chr9 117441646 117441769 -24829675 + AluSq/x SINE Alu 11 133 -179 456 261 112 37 chr9 117441862 117442077 -24829367 + MLT1L LTR MaLR 372 602 -13 2024 226 72 60 chr9 117442803 117443439 -24828005 - MER21B LTR ERV1 -124 739 96 297 240 30 70 chr9 117443492 117443573 -24827871 - MER21B LTR ERV1 -767 96 18 306 0 0 0 chr9 117443573 117443607 -24827837 + (TA)n Simple_repeat Simple_repeat 1 34 0 297 240 30 70 chr9 117443607 117443625 -24827819 - MER21B LTR ERV1 -845 18 1 231 271 0 0 chr9 117443712 117443760 -24827684 + MER94 DNA DNA 87 134 0 298 316 105 30 chr9 117444206 117444339 -24827105 - MER91A DNA MER1_type -26 170 28 1656 162 14 0 chr9 117444556 117444889 -24826555 + AluSx SINE Alu 1 337 0 2345 138 2 44 chr9 117445027 117445440 -24826004 + MSTD LTR MaLR 1 396 0 3981 121 30 30 chr9 117445536 117445841 -24825603 - MER41B LTR ERV1 0 635 331 2321 78 0 0 chr9 117445841 117446135 -24825309 - AluY SINE Alu -17 294 1 3981 121 30 30 chr9 117446135 117446464 -24824980 - MER41B LTR ERV1 -303 332 1 2405 199 63 38 chr9 117446625 117447239 -24824205 + MER92B LTR ERV1 7 636 0 2229 91 0 3 chr9 117447605 117447901 -24823543 - AluSg SINE Alu -14 296 2 218 333 12 12 chr9 117447946 117448030 -24823414 - MIR3 SINE MIR 0 208 125 224 292 50 50 chr9 117448041 117448161 -24823283 + L2 LINE L2 3153 3272 0 1709 151 3 40 chr9 117448216 117448520 -24822924 - AluJo SINE Alu -16 296 4 314 257 225 32 chr9 117448931 117449118 -24822326 - MIR SINE MIR -11 251 29 2255 88 0 0 chr9 117449204 117449499 -24821945 + AluSg SINE Alu 1 295 -15 1175 275 87 35 chr9 117449778 117449877 -24821567 - LTR16C LTR ERVL -4 487 395 2072 91 0 24 chr9 117449877 117450175 -24821269 + AluSx SINE Alu 2 292 -20 1175 275 87 35 chr9 117450175 117450537 -24820907 - LTR16C LTR ERVL -96 395 2 540 129 138 26 chr9 117450663 117450779 -24820665 - MER65A LTR ERV1 -1 444 316 2095 87 0 17 chr9 117450782 117451093 -24820351 - AluSq SINE Alu 0 306 1 648 188 106 24 chr9 117451093 117451263 -24820181 - MER65A LTR ERV1 -257 188 5 6617 231 87 36 chr9 117451268 117453817 -24817627 - MER65A-int LTR ERV1 -1 4870 2675 496 149 0 0 chr9 117453826 117453900 -24817544 - U13 snRNA snRNA -30 74 1 622 244 8 0 chr9 117453924 117454051 -24817393 + FLAM_A SINE Alu 1 128 -5 861 147 55 92 chr9 117454055 117454141 -24817303 - MER21B-int LTR ERV1 -2586 4012 3924 2142 92 0 0 chr9 117454141 117454450 -24816994 + AluSc SINE Alu 1 309 0 861 147 55 92 chr9 117454450 117454656 -24816788 - MER21B-int LTR ERV1 -2674 3924 3731 801 163 10 51 chr9 117454744 117454940 -24816504 - MER21B-int LTR ERV1 -2869 3729 3542 2179 111 0 0 chr9 117454966 117455263 -24816181 + AluSg SINE Alu 1 297 -13 1459 128 26 0 chr9 117455510 117455744 -24815700 - AluSx SINE Alu -72 240 1 1058 210 44 135 chr9 117455744 117455793 -24815651 - MER21B-int LTR ERV1 -281 1505 1453 2137 112 0 3 chr9 117455793 117456087 -24815357 + AluSg SINE Alu 3 295 -15 1058 210 44 135 chr9 117456087 117456644 -24814800 - MER21B-int LTR ERV1 -333 1453 1067 2427 40 10 0 chr9 117456644 117456941 -24814503 + AluY SINE Alu 1 300 -11 1058 210 44 135 chr9 117456941 117457332 -24814112 - MER21B-int LTR ERV1 -719 1067 642 465 230 0 48 chr9 117457338 117457464 -24813980 + MER54B LTR ERVL 95 214 -579 1228 218 97 75 chr9 117457531 117457555 -24813889 - MER21B-int LTR ERV1 -4231 640 618 2066 114 10 0 chr9 117457555 117457854 -24813590 - AluSq SINE Alu -11 302 1 1228 218 97 75 chr9 117457854 117458245 -24813199 - MER21B-int LTR ERV1 -4253 618 210 2027 130 3 0 chr9 117458245 117458545 -24812899 + AluSq SINE Alu 1 301 -12 1228 218 97 75 chr9 117458545 117458632 -24812812 - MER21B-int LTR ERV1 -4661 210 126 1084 201 74 4 chr9 117458633 117458862 -24812582 + AluJb SINE Alu 1 245 -67 796 83 0 9 chr9 117458902 117459010 -24812434 + MER30 DNA MER1_type 1 107 -123 497 140 40 40 chr9 117459135 117459235 -24812209 - MER65B LTR ERV1 -431 100 1 2020 123 7 0 chr9 117459236 117459529 -24811915 - AluSx SINE Alu -17 295 1 751 242 66 48 chr9 117459587 117459814 -24811630 - MER21B LTR ERV1 -60 803 573 2160 93 13 13 chr9 117459865 117460175 -24811269 - AluSg SINE Alu 0 310 1 2191 96 17 0 chr9 117460746 117461047 -24810397 + AluSx SINE Alu 1 306 -6 2077 120 7 0 chr9 117461441 117461742 -24809702 + AluSg SINE Alu 1 303 -7 1232 226 52 18 chr9 117461742 117462073 -24809371 - MER92C LTR ERV1 -12 542 128 2031 109 0 26 chr9 117462100 117462412 -24809032 + AluSq SINE Alu 1 304 -9 900 155 107 5 chr9 117462414 117462601 -24808843 + AluJo SINE Alu 104 309 -3 180 0 0 0 chr9 117462618 117462638 -24808806 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 506 114 8 197 chr9 117462650 117462782 -24808662 - MER92B LTR ERV1 -529 107 1 552 247 90 58 chr9 117462859 117462932 -24808512 + L2 LINE L2 2683 2752 -520 209 32 0 32 chr9 117462932 117462963 -24808481 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1675 149 14 0 chr9 117462963 117463239 -24808205 - AluSx SINE Alu -32 280 1 552 247 90 58 chr9 117463239 117463473 -24807971 + L2 LINE L2 2751 3002 -270 690 176 6 82 chr9 117463529 117463614 -24807830 - MER72 LTR ERV1 0 722 653 1866 67 0 31 chr9 117463614 117463868 -24807576 - AluSq SINE Alu -12 301 56 690 176 6 82 chr9 117463868 117463941 -24807503 - MER72 LTR ERV1 -69 653 576 1025 157 6 6 chr9 117464049 117464221 -24807223 + AluSc SINE Alu 123 294 -15 1949 174 17 20 chr9 117464222 117464567 -24806877 - MER72 LTR ERV1 -140 582 239 848 125 0 0 chr9 117464664 117464784 -24806660 - FLAM_C SINE Alu -18 125 6 919 221 26 15 chr9 117464804 117464999 -24806445 - MER72 LTR ERV1 -525 197 1 269 228 11 11 chr9 117465060 117465152 -24806292 - Charlie5 DNA MER1_type 0 2614 2523 1546 159 12 47 chr9 117465173 117465493 -24805951 - L1MB2 LINE L1 -2 6169 5861 206 227 67 0 chr9 117465495 117465614 -24805830 + (TA)n Simple_repeat Simple_repeat 2 128 0 2138 111 0 7 chr9 117465633 117465930 -24805514 - AluSx SINE Alu -17 295 1 376 80 0 0 chr9 117465983 117466033 -24805411 - LTR54 LTR ERV1 -75 435 386 588 80 0 0 chr9 117466033 117466108 -24805336 - Alu SINE Alu -234 76 2 372 187 40 13 chr9 117466109 117466184 -24805260 - LTR54 LTR ERV1 -184 326 250 22 35 0 0 chr9 117466203 117466232 -24805212 + AT_rich Low_complexity Low_complexity 1 29 0 326 136 0 17 chr9 117466241 117466300 -24805144 - FAM SINE Alu -2 177 120 188 261 0 22 chr9 117466314 117466360 -24805084 - L3 LINE CR1 -1060 517 473 1932 55 0 0 chr9 117466374 117466611 -24804833 - AluY SINE Alu -17 294 58 25 0 0 0 chr9 117466611 117466636 -24804808 + AT_rich Low_complexity Low_complexity 1 25 0 1818 154 3 0 chr9 117466636 117466922 -24804522 - AluSx SINE Alu -25 287 1 237 188 62 143 chr9 117466926 117467038 -24804406 + LTR56 LTR ERV1 119 221 -224 1215 180 47 19 chr9 117467098 117467377 -24804067 + LTR54 LTR ERV1 1 309 -189 1451 176 4 0 chr9 117467377 117467621 -24803823 + AluJb SINE Alu 1 245 -67 3402 154 38 11 chr9 117467622 117468180 -24803264 + MER50 LTR ERV1 131 703 -31 738 238 107 5 chr9 117468194 117468400 -24803044 + LTR56 LTR ERV1 219 445 0 1864 152 3 0 chr9 117468524 117468826 -24802618 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr9 117468826 117468851 -24802593 + AT_rich Low_complexity Low_complexity 1 25 0 3226 134 6 26 chr9 117469033 117469321 -24802123 - MER41E LTR ERV1 -16 496 221 2435 40 10 0 chr9 117469321 117469619 -24801825 - AluY SINE Alu -10 301 1 3226 134 6 26 chr9 117469619 117469836 -24801608 - MER41E LTR ERV1 -291 221 1 1998 130 3 0 chr9 117469877 117470178 -24801266 - AluSx SINE Alu -10 302 1 392 196 161 89 chr9 117470272 117470342 -24801102 - MIR SINE MIR -46 216 152 1686 134 0 4 chr9 117470342 117470595 -24800849 - AluJo SINE Alu -16 296 45 392 196 161 89 chr9 117470595 117470692 -24800752 - MIR SINE MIR -110 152 37 2071 144 82 56 chr9 117471329 117471393 -24800051 - L1MB7 LINE L1 -7 6177 6116 2250 93 3 0 chr9 117471393 117471695 -24799749 - AluSp SINE Alu -10 303 1 2071 144 82 56 chr9 117471695 117472080 -24799364 - L1MB7 LINE L1 -68 6116 5716 1622 178 0 34 chr9 117472155 117472476 -24798968 - AluSg SINE Alu 0 310 1 1960 105 27 10 chr9 117472621 117472915 -24798529 + AluSg SINE Alu 11 309 -1 942 154 13 0 chr9 117472929 117473085 -24798359 - LTR64 LTR ERVK -301 257 100 391 279 84 22 chr9 117473292 117473471 -24797973 + MIR SINE MIR 2 191 -71 2090 105 16 0 chr9 117473688 117473993 -24797451 - AluSg SINE Alu 0 310 1 2143 82 7 7 chr9 117474001 117474304 -24797140 - AluSx SINE Alu -9 303 1 373 284 152 42 chr9 117474304 117474568 -24796876 + L2 LINE L2 3008 3300 -13 308 276 102 10 chr9 117474592 117474690 -24796754 - MIR SINE MIR -82 126 20 235 319 217 12 chr9 117475594 117475760 -24795684 + L2 LINE L2 2404 2603 -711 270 0 0 0 chr9 117475862 117475892 -24795552 + (TG)n Simple_repeat Simple_repeat 2 31 0 620 293 58 59 chr9 117476306 117476650 -24794794 + L2 LINE L2 2866 3248 -65 287 268 113 11 chr9 117476664 117476769 -24794675 - MIR SINE MIR -96 166 50 692 118 131 207 chr9 117477055 117477292 -24794152 - AluSq SINE Alu -89 224 6 29 0 0 0 chr9 117477470 117477499 -24793945 + AT_rich Low_complexity Low_complexity 1 29 0 2243 113 0 7 chr9 117477499 117477809 -24793635 - AluSg SINE Alu -1 309 2 586 227 7 64 chr9 117479566 117479707 -24791737 - L2 LINE L2 0 3272 3140 1515 188 4 14 chr9 117480209 117480485 -24790959 - AluJo SINE Alu -9 303 31 836 176 0 0 chr9 117480525 117480650 -24790794 + FLAM_C SINE Alu 1 125 -18 2238 109 3 7 chr9 117480782 117481084 -24790360 - AluSp SINE Alu -11 302 2 2211 129 0 3 chr9 117481096 117481399 -24790045 - AluSg SINE Alu -8 302 1 2343 94 6 25 chr9 117481565 117481884 -24789560 - AluSq SINE Alu 0 313 1 1886 161 0 7 chr9 117482090 117482381 -24789063 + AluJb SINE Alu 5 293 -19 565 164 121 43 chr9 117482393 117482509 -24788935 + FLAM_A SINE Alu 1 125 -8 2117 64 0 19 chr9 117482858 117483122 -24788322 + AluY SINE Alu 41 299 -12 497 232 80 24 chr9 117483349 117483474 -24787970 - FLAM_A SINE Alu -1 132 1 2877 10 0 0 chr9 117483700 117484006 -24787438 - AluY SINE Alu -5 306 1 536 301 114 37 chr9 117485622 117485876 -24785568 + L2 LINE L2 1723 2009 -1305 1718 169 14 17 chr9 117485876 117486166 -24785278 - AluJb SINE Alu -23 289 1 536 301 114 37 chr9 117486166 117486236 -24785208 + L2 LINE L2 2009 2072 -1242 2305 99 0 7 chr9 117486239 117486541 -24784903 - AluSc SINE Alu -9 300 1 2279 66 107 0 chr9 117486556 117486875 -24784569 - THE1A LTR MaLR -2 353 1 6654 86 15 35 chr9 117486875 117487857 -24783587 - THE1A-int LTR MaLR 0 1580 618 1233 155 6 0 chr9 117487857 117488038 -24783406 + AluSq SINE Alu 113 294 -19 4359 82 15 0 chr9 117488117 117488723 -24782721 - THE1A-int LTR MaLR -965 615 1 2766 69 17 3 chr9 117488723 117489073 -24782371 - THE1A LTR MaLR 0 355 1 532 219 182 11 chr9 117489073 117489260 -24782184 + L2 LINE L2 2129 2347 -967 844 151 59 20 chr9 117489548 117489700 -24781744 - AluJb SINE Alu -18 294 137 689 159 43 14 chr9 117489727 117489865 -24781579 - MER20 DNA MER1_type -70 149 8 347 229 187 22 chr9 117489989 117490150 -24781294 - MLT1J2 LTR MaLR 0 409 266 2261 120 0 0 chr9 117490365 117490664 -24780780 - AluSx SINE Alu -13 299 1 378 239 277 16 chr9 117490672 117490860 -24780584 - MIR SINE MIR -24 238 2 2199 104 0 26 chr9 117491024 117491331 -24780113 + AluSx SINE Alu 13 311 -1 363 276 160 13 chr9 117491504 117491660 -24779784 - MIR SINE MIR -44 218 40 1736 172 0 35 chr9 117492355 117492674 -24778770 + AluJb SINE Alu 1 308 -4 610 271 184 0 chr9 117493251 117493469 -24777975 - MIR SINE MIR -3 259 2 2160 126 3 0 chr9 117494090 117494383 -24777061 + AluJb SINE Alu 1 294 -18 227 288 31 98 chr9 117494443 117494606 -24776838 - L2 LINE L2 -203 3069 2918 370 262 83 40 chr9 117494965 117495148 -24776296 - MIR SINE MIR -46 216 18 263 281 133 22 chr9 117495403 117495538 -24775906 + L2 LINE L2 3164 3313 0 360 313 112 72 chr9 117495705 117495744 -24775700 + L1MC4a LINE L1 5574 5610 -2198 2286 84 0 3 chr9 117495744 117496066 -24775378 + AluSx SINE Alu 1 321 0 360 313 112 72 chr9 117496066 117496103 -24775341 + L1MC4a LINE L1 5610 5644 -2164 1546 164 7 69 chr9 117496103 117496592 -24774852 + AluJb SINE Alu 1 470 0 360 313 112 72 chr9 117496592 117496724 -24774720 + L1MC4a LINE L1 5644 5769 -2039 437 116 0 70 chr9 117496724 117496759 -24774685 + MADE1 DNA Mariner 1 37 -43 2604 44 3 0 chr9 117496759 117497054 -24774390 - AluSp SINE Alu -17 296 1 437 116 0 70 chr9 117497054 117497104 -24774340 + MADE1 DNA Mariner 37 80 0 360 313 112 72 chr9 117497104 117497294 -24774150 + L1MC4a LINE L1 5769 5992 -1816 637 249 107 10 chr9 117497417 117497614 -24773830 - MIR SINE MIR -30 232 17 805 143 8 8 chr9 117497655 117497788 -24773656 + FLAM_C SINE Alu 1 133 0 30 0 0 0 chr9 117498112 117498142 -24773302 + GC_rich Low_complexity Low_complexity 1 30 0 231 36 0 0 chr9 117498246 117498274 -24773170 + (CGG)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr9 117498288 117498311 -24773133 + GC_rich Low_complexity Low_complexity 1 23 0 426 343 29 11 chr9 117498640 117498815 -24772629 + MIR3 SINE MIR 20 197 -11 344 275 147 72 chr9 117499347 117499667 -24771777 + L2 LINE L2 2924 3267 -5 732 237 85 0 chr9 117499680 117499857 -24771587 - MIR SINE MIR -11 251 60 234 0 0 0 chr9 117500462 117500488 -24770956 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 467 277 14 34 chr9 117500546 117500694 -24770750 + MIR SINE MIR 9 153 -109 548 258 26 19 chr9 117500760 117500915 -24770529 - MIR SINE MIR -78 184 29 941 184 29 6 chr9 117501054 117501228 -24770216 + MER45A DNA AcHobo 1 178 0 2559 60 0 0 chr9 117501609 117501907 -24769537 - AluSx SINE Alu -8 304 7 365 325 123 6 chr9 117501990 117502153 -24769291 - MIR SINE MIR -20 242 61 772 99 0 9 chr9 117502174 117502285 -24769159 - HY1 scRNA scRNA -2 110 1 2272 92 17 7 chr9 117502413 117502708 -24768736 - AluSq SINE Alu -15 298 1 2617 58 0 0 chr9 117502722 117503031 -24768413 - AluY SINE Alu -2 309 1 2352 112 0 0 chr9 117503070 117503382 -24768062 - AluSx SINE Alu 0 312 1 251 299 165 16 chr9 117504139 117504266 -24767178 + L2 LINE L2 2554 2699 -615 1561 200 0 4 chr9 117504287 117504567 -24766877 - AluJo SINE Alu -12 300 22 2311 129 0 0 chr9 117504582 117504893 -24766551 - AluSx SINE Alu -1 311 1 187 231 15 92 chr9 117504899 117504964 -24766480 + L2 LINE L2 2694 2753 -561 886 276 44 86 chr9 117504972 117505092 -24766352 + L2 LINE L2 2884 3007 -265 1900 129 26 51 chr9 117505092 117505403 -24766041 + AluSx SINE Alu 4 306 -6 886 276 44 86 chr9 117505403 117505688 -24765756 + L2 LINE L2 3007 3272 0 234 198 0 3 chr9 117505897 117505950 -24765494 - HAL1b LINE L1 -862 486 441 309 26 0 0 chr9 117506010 117506048 -24765396 + (CA)n Simple_repeat Simple_repeat 1 38 0 295 307 118 0 chr9 117506424 117506551 -24764893 + MIR SINE MIR 98 239 -23 2078 128 0 14 chr9 117506568 117507265 -24764179 - AluJb SINE Alu 0 693 1 2303 87 0 20 chr9 117506643 117506942 -24764502 + AluSq SINE Alu 1 293 -20 181 319 92 17 chr9 117507503 117507622 -24763822 - MIR3 SINE MIR -78 130 3 1865 158 6 32 chr9 117507774 117508085 -24763359 + AluJb SINE Alu 3 305 -7 449 325 128 14 chr9 117508350 117508860 -24762584 - L2 LINE L2 -218 3054 2470 1711 198 26 81 chr9 117509458 117509525 -24761919 - MLT1D LTR MaLR 0 505 436 1193 441 0 3 chr9 117509525 117509842 -24761602 + AluSx SINE Alu 1 316 0 1711 198 26 81 chr9 117509842 117509863 -24761581 - MLT1D LTR MaLR -69 436 415 2213 93 18 0 chr9 117509863 117510164 -24761280 - AluSq SINE Alu 0 306 1 1711 198 26 81 chr9 117510164 117510602 -24760842 - MLT1D LTR MaLR -90 415 5 425 328 70 39 chr9 117510696 117510955 -24760489 - L3 LINE CR1 -81 1496 1230 397 291 62 112 chr9 117511345 117511702 -24759742 - L2 LINE L2 -1 3271 2933 821 286 32 20 chr9 117511744 117511996 -24759448 + MIR SINE MIR 8 262 0 2279 114 10 3 chr9 117512153 117512460 -24758984 - AluSx SINE Alu -2 310 2 180 0 0 0 chr9 117512539 117512559 -24758885 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2329 88 0 0 chr9 117512559 117512842 -24758602 - AluSg SINE Alu -26 284 2 879 130 0 43 chr9 117512843 117512981 -24758463 - AluJo/FLAM SINE Alu -170 132 1 957 272 34 4 chr9 117513142 117513381 -24758063 - MIR SINE MIR -16 246 1 410 232 85 55 chr9 117513442 117513606 -24757838 - L3 LINE CR1 -198 1379 1211 259 308 120 17 chr9 117513959 117514076 -24757368 + MIR SINE MIR 23 151 -57 299 179 15 0 chr9 117514091 117514158 -24757286 + (TA)n Simple_repeat Simple_repeat 2 69 0 444 200 0 0 chr9 117514191 117514266 -24757178 - MIR SINE MIR -186 76 2 524 274 121 0 chr9 117514344 117514501 -24756943 - MIR SINE MIR -6 256 81 332 241 69 11 chr9 117515472 117515559 -24755885 - MIR SINE MIR -149 113 22 537 320 69 9 chr9 117515633 117515864 -24755580 - MIR SINE MIR -11 251 7 2215 178 48 40 chr9 117515872 117516371 -24755073 - MLT1D LTR MaLR -2 503 1 348 24 0 0 chr9 117516994 117517035 -24754409 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 919 247 10 0 chr9 117517268 117517462 -24753982 + MIR SINE MIR 67 262 0 382 198 12 47 chr9 117517443 117517529 -24753915 - MIR SINE MIR -100 162 80 * 1723 146 113 0 chr9 117517750 117518025 -24753419 + AluJo SINE Alu 1 306 -6 647 271 21 27 chr9 117518173 117518361 -24753083 - MIR SINE MIR -24 238 52 1019 249 22 91 chr9 117518425 117518537 -24752907 - MER20B DNA MER1_type -394 389 271 2054 154 10 0 chr9 117518537 117518836 -24752608 + AluJo SINE Alu 1 302 -10 1019 249 22 91 chr9 117518836 117519140 -24752304 - MER20B DNA MER1_type -512 271 2 609 321 38 5 chr9 117519461 117519673 -24751771 - MIR SINE MIR -10 252 34 1609 199 0 50 chr9 117519706 117519881 -24751563 - AluJo SINE Alu -4 308 155 2473 81 0 0 chr9 117519881 117520178 -24751266 - AluSg SINE Alu -13 297 1 1609 199 0 50 chr9 117520178 117520319 -24751125 - AluJo SINE Alu -157 155 8 187 311 107 33 chr9 117520862 117520984 -24750460 - L2 LINE L2 -3 3269 3139 185 364 76 0 chr9 117521027 117521159 -24750285 - L2 LINE L2 -376 2938 2797 440 275 37 0 chr9 117521437 117521546 -24749898 - L2 LINE L2 -2 3311 3199 2336 100 0 28 chr9 117521777 117522096 -24749348 + AluSx SINE Alu 1 310 -2 1964 147 3 10 chr9 117522117 117522410 -24749034 + AluJb SINE Alu 5 295 -17 2046 125 4 4 chr9 117523205 117523520 -24747924 - AluSx SINE Alu 0 315 1 2382 103 3 3 chr9 117524001 117524313 -24747131 - AluSq SINE Alu -1 312 1 29 28 0 0 chr9 117524313 117524349 -24747095 + AT_rich Low_complexity Low_complexity 1 36 0 242 300 50 25 chr9 117524444 117524564 -24746880 - MIR SINE MIR -67 141 19 263 291 156 28 chr9 117524604 117524745 -24746699 + MIR SINE MIR 34 192 -70 2134 132 0 0 chr9 117524763 117525059 -24746385 - AluSx SINE Alu -14 298 3 1597 178 0 8 chr9 117525859 117526117 -24745327 - AluJb SINE Alu -17 295 40 343 82 0 0 chr9 117526465 117526514 -24744930 + AluJ/FLAM SINE Alu 9 57 -245 27 62 0 0 chr9 117527102 117527150 -24744294 + AT_rich Low_complexity Low_complexity 1 48 0 854 147 7 7 chr9 117527270 117527406 -24744038 - AluJb SINE Alu -176 136 1 241 286 42 68 chr9 117527790 117527982 -24743462 - MIR SINE MIR -56 206 20 328 156 16 0 chr9 117528231 117528295 -24743149 - AluSp/q SINE Alu 0 303 239 2239 109 3 0 chr9 117528239 117528533 -24742911 - AluSq SINE Alu -18 295 1 327 360 51 0 chr9 117528535 117528713 -24742731 - MIR SINE MIR -64 198 12 638 110 81 103 chr9 117528895 117529001 -24742443 + AluJo/FLAM SINE Alu 1 105 -197 2154 101 7 17 chr9 117529001 117529297 -24742147 - AluSq SINE Alu -20 293 1 638 110 81 103 chr9 117529297 117529326 -24742118 + AluJo/FLAM SINE Alu 105 133 -169 1661 148 10 27 chr9 117529367 117529665 -24741779 - L1MB3 LINE L1 -1 6182 5890 207 219 0 0 chr9 117529687 117529728 -24741716 + T-rich Low_complexity Low_complexity 1 41 0 34 0 0 0 chr9 117529975 117530009 -24741435 + AT_rich Low_complexity Low_complexity 1 34 0 866 147 0 0 chr9 117530009 117530138 -24741306 - FLAM_C SINE Alu -4 129 1 255 114 45 0 chr9 117531070 117531114 -24740330 - MIR3 SINE MIR -54 154 109 188 363 40 96 chr9 117531667 117531918 -24739526 + L2 LINE L2 2950 3186 -86 470 269 12 31 chr9 117532045 117532155 -24739289 + MIR3 SINE MIR 46 154 -54 2163 113 0 10 chr9 117532155 117532455 -24738989 - AluSx SINE Alu -15 297 1 470 269 12 31 chr9 117532455 117532504 -24738940 + MIR3 SINE MIR 154 202 -6 303 317 0 0 chr9 117532630 117532734 -24738710 + MIR SINE MIR 42 145 -63 292 211 0 40 chr9 117533191 117533267 -24738177 + MIR SINE MIR 112 184 -78 28 0 0 0 chr9 117533296 117533324 -24738120 + AT_rich Low_complexity Low_complexity 1 28 0 749 147 0 77 chr9 117533324 117533467 -24737977 - FLAM_C SINE Alu -1 132 1 442 249 136 38 chr9 117533562 117533775 -24737669 + MIR SINE MIR 24 257 -5 255 229 183 59 chr9 117533975 117534128 -24737316 + MIR SINE MIR 79 250 -12 3779 188 35 83 chr9 117534173 117535220 -24736224 - L1M4 LINE L1 -1085 5061 3965 1481 157 21 102 chr9 117535220 117535552 -24735892 - AluYb8 SINE Alu -12 306 2 3779 188 35 83 chr9 117535552 117535594 -24735850 - L1M4 LINE L1 -2181 3965 3923 2020 117 0 11 chr9 117535594 117535905 -24735539 - AluSc SINE Alu 0 308 1 1528 153 59 38 chr9 117535913 117536052 -24735392 - AluJo SINE Alu -14 298 163 1645 166 44 37 chr9 117536052 117536347 -24735097 - AluSx SINE Alu -15 297 1 1528 153 59 38 chr9 117536347 117536494 -24734950 - AluJo SINE Alu -149 163 6 3779 188 35 83 chr9 117536494 117536555 -24734889 - L1M4 LINE L1 -2128 4018 3956 574 268 149 75 chr9 117536561 117536997 -24734447 - L1MEc LINE L1 -3962 2625 2223 2225 122 0 0 chr9 117536997 117537300 -24734144 - AluSx SINE Alu -9 303 1 574 268 149 75 chr9 117537300 117538124 -24733320 - L1MEc LINE L1 -4364 2223 1271 1825 157 55 7 chr9 117538176 117538469 -24732975 - AluJo SINE Alu -5 307 1 327 270 206 32 chr9 117538469 117538717 -24732727 - L1MEc LINE L1 -5186 1223 933 2548 69 0 0 chr9 117538991 117539296 -24732148 - AluY SINE Alu -6 305 1 229 267 33 0 chr9 117539502 117539562 -24731882 - L1MEc LINE L1 -5998 398 337 400 174 12 70 chr9 117540185 117540271 -24731173 + MLT2E LTR ERVL 13 93 -535 604 216 0 0 chr9 117540379 117540504 -24730940 - FLAM_C SINE Alu -5 138 14 1863 221 193 33 chr9 117540536 117541179 -24730265 - LTR41 LTR ERVL -11 762 17 693 277 39 22 chr9 117541210 117541441 -24730003 + MIR SINE MIR 4 238 -24 1198 78 0 0 chr9 117541483 117541649 -24729795 + AluSg/x SINE Alu 143 308 0 1988 131 23 13 chr9 117541799 117541935 -24729509 + AluSx SINE Alu 1 134 -178 2415 75 3 7 chr9 117541935 117542240 -24729204 + AluSp SINE Alu 1 304 -9 1988 131 23 13 chr9 117542240 117542409 -24729035 + AluSx SINE Alu 134 309 -3 2107 143 28 22 chr9 117542434 117542797 -24728647 + MLT1A1 LTR MaLR 1 365 0 226 312 107 51 chr9 117542819 117543072 -24728372 + L2 LINE L2 2709 2975 -339 2545 51 0 0 chr9 117544238 117544533 -24726911 - AluY SINE Alu -16 295 1 291 279 66 66 chr9 117544591 117544727 -24726717 - MIR SINE MIR -75 187 52 251 211 0 122 chr9 117545598 117545640 -24725804 + MIR SINE MIR 82 109 -153 1931 157 0 25 chr9 117545640 117545958 -24725486 - AluJo SINE Alu -2 310 1 251 211 0 122 chr9 117545958 117546005 -24725439 + MIR SINE MIR 109 160 -102 263 255 77 43 chr9 117546135 117546296 -24725148 + MIR3 SINE MIR 20 187 -21 370 272 109 87 chr9 117546479 117546877 -24724567 + L2 LINE L2 2554 3011 -302 2151 115 10 0 chr9 117546877 117547173 -24724271 - AluSx SINE Alu -13 299 1 370 272 109 87 chr9 117547173 117547424 -24724020 + L2 LINE L2 3011 3255 -58 2043 144 0 13 chr9 117548220 117548525 -24722919 - AluSx SINE Alu -11 301 1 189 233 23 0 chr9 117548629 117548672 -24722772 + L2 LINE L2 3265 3308 -5 336 257 29 9 chr9 117548724 117548829 -24722615 - L2 LINE L2 -4 3309 3203 195 302 186 6 chr9 117549040 117549212 -24722232 - MIR SINE MIR -7 255 53 398 319 72 30 chr9 117549341 117549576 -24721868 + MIR SINE MIR 2 246 -16 345 184 126 0 chr9 117550483 117550570 -24720874 - MLT1E1 LTR MaLR -413 241 144 970 301 121 40 chr9 117550605 117552119 -24719325 + L1MC/D LINE L1 3014 4668 -1478 372 22 0 0 chr9 117552159 117552204 -24719240 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 302 311 19 38 chr9 117552215 117552424 -24719020 + L1MC/D LINE L1 4801 5005 -1141 764 246 39 0 chr9 117552564 117552767 -24718677 + L1MC/D LINE L1 5254 5464 -2344 265 370 10 0 chr9 117552822 117552922 -24718522 + L1MC/D LINE L1 5559 5659 -2149 292 105 0 0 chr9 117552923 117552961 -24718483 - THE1C LTR MaLR -1 374 337 1831 79 4 48 chr9 117552963 117553215 -24718229 + AluSq SINE Alu 1 241 -72 221 311 0 16 chr9 117553404 117553465 -24717979 + polypyrimidine Low_complexity Low_complexity 1 60 0 2057 131 10 0 chr9 117553465 117553756 -24717688 - AluSx SINE Alu -18 294 1 229 243 28 84 chr9 117554402 117554509 -24716935 + MIR SINE MIR 23 123 -85 347 285 52 41 chr9 117554867 117555039 -24716405 - L2 LINE L2 -3 3310 3137 2056 136 3 23 chr9 117555041 117555350 -24716094 + AluSx SINE Alu 2 304 -8 403 189 11 0 chr9 117555953 117556048 -24715396 - L1MA5 LINE L1 -3 6297 6202 297 256 203 48 chr9 117556075 117556263 -24715181 - L1ME4a LINE L1 -2 6119 5961 1865 140 7 20 chr9 117556263 117556563 -24714881 - AluJo SINE Alu -16 296 1 297 256 203 48 chr9 117556563 117556695 -24714749 - L1ME4a LINE L1 -160 5961 5851 201 39 0 0 chr9 117556695 117556721 -24714723 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1683 153 25 29 chr9 117556721 117556868 -24714576 - AluJb SINE Alu -32 280 133 2378 98 3 0 chr9 117556868 117557163 -24714281 - AluSp SINE Alu -17 296 1 1683 153 25 29 chr9 117557163 117557296 -24714148 - AluJb SINE Alu -179 133 1 297 256 203 48 chr9 117557296 117557367 -24714077 - L1ME4a LINE L1 -269 5852 5665 313 256 29 80 chr9 117557427 117557564 -24713880 + MIR SINE MIR 62 191 -71 238 323 62 0 chr9 117557587 117557683 -24713761 + L2 LINE L2 3195 3296 -17 373 229 13 10 chr9 117558122 117558226 -24713218 + MLT1I LTR MaLR 320 408 -1 474 257 178 10 chr9 117558244 117558446 -24712998 - MIR SINE MIR -16 246 11 605 225 156 6 chr9 117558463 117558623 -24712821 - MER5A DNA MER1_type 0 189 6 283 319 121 25 chr9 117559403 117559560 -24711884 + MIR SINE MIR 79 250 -12 378 329 19 25 chr9 117559649 117559807 -24711637 + MIR3 SINE MIR 46 202 -6 662 232 77 17 chr9 117560003 117560184 -24711260 + L2 LINE L2 2555 2746 -568 786 266 82 40 chr9 117560233 117560613 -24710831 + L1M4c LINE L1 1014 1415 -4969 2475 81 7 0 chr9 117560613 117560922 -24710522 + AluSp SINE Alu 1 311 -2 786 266 82 40 chr9 117560922 117560965 -24710479 + L1M4c LINE L1 1415 1455 -4929 710 275 50 23 chr9 117560998 117561232 -24710212 + L1M4c LINE L1 1741 1984 -4579 2249 115 0 0 chr9 117561232 117561528 -24709916 - AluJo SINE Alu -16 296 1 710 275 50 23 chr9 117561528 117561551 -24709893 + L1M4c LINE L1 1984 2005 -4558 231 301 115 27 chr9 117561810 117561993 -24709451 + L2 LINE L2 2936 3134 -179 722 174 0 7 chr9 117562004 117562148 -24709296 + CT-rich Low_complexity Low_complexity 2 144 0 1614 141 63 22 chr9 117562172 117562441 -24709003 - AluJo SINE Alu -32 280 1 477 296 0 35 chr9 117562448 117562620 -24708824 + L2 LINE L2 3143 3308 -5 276 311 46 33 chr9 117562960 117563111 -24708333 + L2 LINE L2 2499 2651 -663 235 262 215 20 chr9 117563327 117563476 -24707968 + L2 LINE L2 2929 3106 -166 198 250 0 0 chr9 117563522 117563562 -24707882 + L2 LINE L2 3265 3304 -9 1682 167 6 22 chr9 117563622 117563939 -24707505 - AluJb SINE Alu 0 312 1 437 202 24 0 chr9 117563961 117564045 -24707399 - L2 LINE L2 -1 3271 3186 395 261 0 54 chr9 117564060 117564091 -24707353 + L2 LINE L2 3204 3235 -78 2449 68 0 0 chr9 117564091 117564386 -24707058 - AluY SINE Alu -16 295 1 395 261 0 54 chr9 117564386 117564465 -24706979 + L2 LINE L2 3235 3308 -5 210 37 0 0 chr9 117564706 117564733 -24706711 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1671 188 38 0 chr9 117566038 117566330 -24705114 + AluJo SINE Alu 1 303 -9 2380 82 7 3 chr9 117567592 117567897 -24703547 - AluSp SINE Alu -7 306 1 350 238 19 9 chr9 117568571 117568676 -24702768 - L1MC4a LINE L1 -1862 5946 5841 496 217 42 28 chr9 117568933 117569076 -24702368 + MIR SINE MIR 105 249 -13 302 244 83 75 chr9 117569698 117569840 -24701604 + MIR SINE MIR 6 148 -114 2027 120 10 45 chr9 117569840 117570149 -24701295 - AluSx SINE Alu -14 298 1 302 244 83 75 chr9 117570149 117570263 -24701181 + MIR SINE MIR 148 260 -2 2111 51 0 77 chr9 117570644 117570957 -24700487 - L1PA5 LINE L1 0 6154 5866 423 306 19 19 chr9 117570986 117571146 -24700298 - MER5B DNA MER1_type -4 174 15 564 277 17 11 chr9 117571188 117571365 -24700079 + MER5B DNA MER1_type 1 178 0 2083 121 47 25 chr9 117571602 117571967 -24699477 + THE1C LTR MaLR 1 373 -2 516 286 119 4 chr9 117572325 117572552 -24698892 + MIR SINE MIR 10 262 0 2188 84 0 66 chr9 117572644 117572977 -24698467 - AluY SINE Alu 0 311 1 1737 177 11 0 chr9 117572980 117573263 -24698181 - AluJb SINE Alu -26 286 1 3581 205 27 12 chr9 117573371 117574185 -24697259 - L1MD2 LINE L1 -64 6295 5470 725 142 0 0 chr9 117574221 117574334 -24697110 + AluJb SINE Alu 199 311 -1 2812 174 20 38 chr9 117574334 117575089 -24696355 - L1MC4a LINE L1 -385 5799 5060 2139 129 0 3 chr9 117575089 117575383 -24696061 - AluSx SINE Alu -19 293 1 2812 174 20 38 chr9 117575383 117575598 -24695846 - L1MC4a LINE L1 -1124 5060 4843 372 261 144 62 chr9 117575693 117576107 -24695337 + MLT1H LTR MaLR 1 547 -8 3933 126 18 13 chr9 117576186 117576805 -24694639 - L1PA15 LINE L1 0 6165 5544 925 284 162 8 chr9 117576882 117577277 -24694167 - MER113 DNA MER1_type? -5 516 61 228 172 0 0 chr9 117577381 117577439 -24694005 + CT-rich Low_complexity Low_complexity 2 59 0 256 104 19 84 chr9 117577464 117577494 -24693950 - HERV17 LTR ERV1 -7779 847 817 210 105 0 0 chr9 117577494 117577532 -24693912 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 256 104 19 84 chr9 117577532 117577655 -24693789 - HERV17 LTR ERV1 -7809 817 704 215 214 14 0 chr9 117577655 117577725 -24693719 + CT-rich Low_complexity Low_complexity 1 71 0 1387 199 85 72 chr9 117577742 117578075 -24693369 - MLT2B1 LTR ERVL -119 401 1 264 160 20 0 chr9 117579167 117579217 -24692227 + MIR SINE MIR 94 144 -64 1793 186 0 3 chr9 117579472 117579779 -24691665 - AluJb SINE Alu -6 306 1 207 0 0 0 chr9 117579994 117580017 -24691427 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 1907 136 14 0 chr9 117580017 117580298 -24691146 - AluSx SINE Alu -27 285 1 203 228 53 0 chr9 117580326 117580383 -24691061 - MIR SINE MIR -1 261 202 * 402 285 130 15 chr9 117580382 117580582 -24690862 + MIR SINE MIR 31 253 -9 294 329 6 60 chr9 117581371 117581538 -24689906 - MIR3 SINE MIR -23 185 28 787 302 109 4 chr9 117581545 117581793 -24689651 + MLT1J LTR MaLR 1 274 -237 339 252 108 58 chr9 117581928 117582067 -24689377 - MLT1H LTR MaLR -195 354 209 214 147 0 0 chr9 117582236 117582270 -24689174 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 213 255 20 0 chr9 117582603 117582654 -24688790 + MIR SINE MIR 22 73 -135 2087 137 0 28 chr9 117582772 117583093 -24688351 - AluSx SINE Alu 0 312 1 640 66 0 22 chr9 117583114 117583205 -24688239 - Alu SINE Alu -3 309 221 21 57 0 0 chr9 117583240 117583275 -24688169 + AT_rich Low_complexity Low_complexity 1 35 0 2067 125 0 0 chr9 117583786 117584087 -24687357 - AluSx SINE Alu 0 302 2 214 300 118 9 chr9 117584975 117585085 -24686359 - MIR SINE MIR -14 248 127 184 284 155 0 chr9 117585234 117585350 -24686094 + MIR3 SINE MIR 71 204 -4 1103 251 60 3 chr9 117585575 117585910 -24685534 + LTR37A LTR ERV1 71 424 -2 249 180 49 16 chr9 117586885 117586946 -24684498 - MIR SINE MIR -112 150 88 2150 206 95 118 chr9 117587280 117588091 -24683353 + LTR1B LTR ERV1 35 826 0 825 173 95 28 chr9 117588239 117588418 -24683026 - MER3 DNA MER1_type -4 205 15 237 307 31 43 chr9 117588547 117588710 -24682734 - MLT1J LTR MaLR -326 185 25 344 262 14 83 chr9 117589575 117589668 -24681776 + MIR3 SINE MIR 68 149 -59 671 232 103 5 chr9 117589668 117589862 -24681582 + MER58C DNA MER1_type 3 215 0 344 262 14 83 chr9 117589862 117589913 -24681531 + MIR3 SINE MIR 149 202 -6 2861 16 0 3 chr9 117590252 117590568 -24680876 - AluYb8 SINE Alu -3 315 1 191 129 0 0 chr9 117590887 117590918 -24680526 + MIR SINE MIR 84 114 -94 21 0 0 0 chr9 117591051 117591072 -24680372 + AT_rich Low_complexity Low_complexity 1 21 0 330 227 55 70 chr9 117591082 117591210 -24680234 - MIR SINE MIR -14 248 123 678 184 0 0 chr9 117591685 117591799 -24679645 - FLAM_C SINE Alu -28 115 2 1954 133 4 11 chr9 117592044 117592323 -24679121 + AluSq SINE Alu 3 279 -34 199 360 0 0 chr9 117592350 117592425 -24679019 - MIR SINE MIR -132 130 56 358 328 53 12 chr9 117592548 117592719 -24678725 - MIR SINE MIR -74 188 11 2249 104 10 0 chr9 117592808 117593105 -24678339 - AluSg SINE Alu -10 300 1 412 228 18 18 chr9 117593403 117593517 -24677927 - MIR SINE MIR -102 160 47 257 331 33 8 chr9 117593918 117594039 -24677405 + MIR3 SINE MIR 48 171 -37 648 170 0 57 chr9 117595176 117595317 -24676127 - MLT1F1 LTR MaLR 0 567 435 271 272 82 39 chr9 117595678 117595884 -24675560 - L1ME3 LINE L1 -214 5948 5734 21 0 0 0 chr9 117596475 117596496 -24674948 + AT_rich Low_complexity Low_complexity 1 21 0 603 100 0 0 chr9 117596496 117596576 -24674868 - AluSp/q SINE Alu -17 296 217 2280 86 3 7 chr9 117596754 117597045 -24674399 - AluY SINE Alu -17 294 5 191 301 10 48 chr9 117597156 117597259 -24674185 + MIR SINE MIR 118 216 -46 190 298 0 0 chr9 117597289 117597336 -24674108 - L3 LINE CR1 -143 1434 1388 1031 318 134 20 chr9 117597645 117597710 -24673734 + L2 LINE L2 1891 1947 -1367 1914 135 0 37 chr9 117597710 117598007 -24673437 - AluJb SINE Alu -22 290 5 1031 318 134 20 chr9 117598007 117598687 -24672757 + L2 LINE L2 1947 2721 -593 1531 194 22 64 chr9 117599059 117599466 -24671978 + MLT1B LTR MaLR 1 390 0 1994 119 3 46 chr9 117599496 117599533 -24671911 + AluSx SINE Alu 1 38 -274 2377 85 0 0 chr9 117599533 117599828 -24671616 - AluSc SINE Alu -14 295 1 1994 119 3 46 chr9 117599828 117600092 -24671352 + AluSx SINE Alu 38 289 -23 875 304 65 33 chr9 117600092 117600935 -24670509 + L1ME3A LINE L1 4185 5054 -1092 599 126 0 0 chr9 117600935 117601022 -24670422 + AluS SINE Alu 2 88 -224 1214 151 32 32 chr9 117601192 117601411 -24670033 + MER20 DNA MER1_type 1 219 0 928 322 52 22 chr9 117601464 117602041 -24669403 + L1ME3A LINE L1 5259 5852 -318 2228 79 3 63 chr9 117602188 117602505 -24668939 - AluY SINE Alu -13 298 1 255 238 9 29 chr9 117602656 117602761 -24668683 - L1MC4 LINE L1 -1339 6703 6601 559 128 23 0 chr9 117602771 117602857 -24668587 - MLT1B LTR MaLR -3 387 300 696 100 0 0 chr9 117602957 117603047 -24668397 - MLT1B LTR MaLR -300 90 1 235 319 44 39 chr9 117603085 117603267 -24668177 - L1P LINE L1 -2361 3785 3603 206 256 61 0 chr9 117603473 117603555 -24667889 + L2 LINE L2 2702 2788 -526 845 210 6 6 chr9 117603605 117603762 -24667682 - AluJb SINE Alu -19 293 137 184 269 59 59 chr9 117603767 117603886 -24667558 + L2 LINE L2 2945 3063 -209 649 239 40 28 chr9 117604697 117604873 -24666571 + MLT1B LTR MaLR 1 178 -196 398 22 67 45 chr9 117604873 117604962 -24666482 + CT-rich Low_complexity Low_complexity 1 91 0 1002 198 11 11 chr9 117604967 117605154 -24666290 + MLT1B LTR MaLR 204 390 0 304 209 0 30 chr9 117605731 117605798 -24665646 + AluS SINE Alu 7 71 -232 1767 225 27 0 chr9 117605811 117606215 -24665229 - L1P LINE L1 -805 5341 4927 259 211 200 11 chr9 117606298 117606393 -24665051 + L2 LINE L2 3200 3312 -1 199 315 102 9 chr9 117606412 117606520 -24664924 + MIR3 SINE MIR 83 200 -8 267 273 201 7 chr9 117606838 117606977 -24664467 + MIR SINE MIR 91 256 -6 602 297 11 5 chr9 117607021 117607206 -24664238 + LTR67 LTR ERVL 360 545 -12 528 300 18 6 chr9 117607840 117608010 -24663434 - MIR3 SINE MIR -3 205 34 2247 96 0 29 chr9 117608293 117608606 -24662838 + AluSc SINE Alu 1 304 -5 306 50 0 0 chr9 117608952 117608992 -24662452 + (CA)n Simple_repeat Simple_repeat 2 41 0 624 188 23 0 chr9 117609062 117609195 -24662249 + L1MA7 LINE L1 6156 6291 0 262 111 0 37 chr9 117609196 117609250 -24662194 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 1444 197 24 28 chr9 117609422 117609712 -24661732 + AluJo SINE Alu 2 290 -22 280 341 0 41 chr9 117609716 117609839 -24661605 - MER5B DNA MER1_type -60 118 1 267 270 0 0 chr9 117610095 117610158 -24661286 - MIR SINE MIR -83 125 63 592 221 31 60 chr9 117610192 117610413 -24661031 + MIR SINE MIR 34 244 -18 1926 149 10 3 chr9 117610870 117611171 -24660273 - AluSx SINE Alu -9 303 1 333 222 127 24 chr9 117611325 117611451 -24659993 + MIR SINE MIR 90 228 -34 1157 154 0 0 chr9 117611924 117612106 -24659338 + AluY SINE Alu 130 311 0 26 50 0 0 chr9 117613645 117613685 -24657759 + AT_rich Low_complexity Low_complexity 1 40 0 2272 104 7 0 chr9 117614480 117614779 -24656665 - AluSp SINE Alu -12 301 1 298 228 123 9 chr9 117615109 117615223 -24656221 + L1ME4a LINE L1 5984 6110 -11 228 182 0 0 chr9 117615946 117615990 -24655454 + A-rich Low_complexity Low_complexity 1 44 0 207 333 20 29 chr9 117616302 117616404 -24655040 - MIR SINE MIR -63 145 45 452 251 207 6 chr9 117616633 117616812 -24654632 - MIR SINE MIR -11 251 37 207 265 0 0 chr9 117617591 117617640 -24653804 + L2 LINE L2 3137 3185 -87 1260 167 31 49 chr9 117617801 117618089 -24653355 - L1MD2 LINE L1 -496 5863 5581 1252 162 4 22 chr9 117618224 117618452 -24652992 - L1MD2 LINE L1 -671 5571 5348 1131 273 103 47 chr9 117618532 117619562 -24651882 - L2 LINE L2 -6 3307 2227 368 208 0 0 chr9 117619673 117619745 -24651699 + MER116 DNA Mariner 1 72 -8 582 278 163 0 chr9 117619752 117619961 -24651483 - MER46C DNA MER2_type -77 261 19 536 315 73 9 chr9 117619999 117620231 -24651213 + L3 LINE CR1 1295 1541 -36 525 298 40 50 chr9 117621084 117621406 -24650038 + L1ME3A LINE L1 5619 5937 -233 188 358 117 8 chr9 117622634 117622754 -24648690 + L2 LINE L2 3167 3299 -14 267 283 17 58 chr9 117623978 117624151 -24647293 + (CAGAGA)n Simple_repeat Simple_repeat 6 171 0 2003 175 16 32 chr9 117624321 117624692 -24646752 - MLT1A1 LTR MaLR 0 365 1 188 286 160 40 chr9 117624871 117625046 -24646398 - L3 LINE CR1 -193 1384 1189 999 304 7 20 chr9 117625053 117625349 -24646095 - MLT1I LTR MaLR -2 407 116 412 191 11 22 chr9 117625813 117625902 -24645542 + MLT1J2 LTR MaLR 344 431 -19 826 265 15 5 chr9 117627028 117627232 -24644212 + MER20 DNA MER1_type 1 206 -13 469 108 10 108 chr9 117627399 117627501 -24643943 - MLT1J2 LTR MaLR -3 447 356 195 241 241 13 chr9 117628177 117628256 -24643188 + MIR SINE MIR 28 124 -84 209 311 134 25 chr9 117628527 117628646 -24642798 + MIR SINE MIR 80 211 -51 313 289 0 36 chr9 117628920 117629003 -24642441 + MIR3 SINE MIR 90 169 -39 764 185 0 15 chr9 117629008 117629138 -24642306 + FLAM_A SINE Alu 2 129 -4 797 179 77 0 chr9 117629154 117629310 -24642134 - MER20 DNA MER1_type -11 208 41 366 273 50 16 chr9 117629316 117629437 -24642007 - MIR SINE MIR -11 251 127 223 301 128 30 chr9 117629558 117629691 -24641753 + MIR3 SINE MIR 3 148 -60 594 349 76 33 chr9 117629974 117630685 -24640759 + L2 LINE L2 2332 3085 -187 7257 121 51 35 chr9 117630685 117631897 -24639547 - Tigger3b DNA MER2_type 0 1231 1 594 349 76 33 chr9 117631897 117632043 -24639401 + L2 LINE L2 3085 3223 -49 1943 144 11 0 chr9 117632304 117632588 -24638856 + L1PA16 LINE L1 5879 6165 -1 1292 170 42 9 chr9 117632797 117633009 -24638435 - MER20 DNA MER1_type 0 219 1 352 295 45 9 chr9 117633473 117633585 -24637859 - MIR3 SINE MIR -19 189 74 219 250 156 16 chr9 117634048 117634112 -24637332 + MIR SINE MIR 20 92 -170 251 254 18 79 chr9 117634212 117634326 -24637118 - MIR SINE MIR -120 142 36 204 329 0 26 chr9 117634420 117634496 -24636948 + MIR SINE MIR 152 225 -37 371 318 76 19 chr9 117634585 117634796 -24636648 - MIR SINE MIR -37 225 3 198 103 0 0 chr9 117635461 117635490 -24635954 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 475 220 105 68 chr9 117635504 117635695 -24635749 + MIR SINE MIR 19 216 -46 330 376 9 0 chr9 117635828 117635937 -24635507 + L2 LINE L2 3163 3272 0 206 294 15 0 chr9 117636004 117636072 -24635372 - MIR SINE MIR -72 136 68 215 303 161 35 chr9 117636202 117636569 -24634875 - L2 LINE L2 -339 2975 2563 271 378 99 7 chr9 117636894 117637045 -24634399 - L3 LINE CR1 -19 1558 1394 424 217 78 16 chr9 117637817 117637946 -24633498 - MIR SINE MIR -61 201 65 1857 207 76 19 chr9 117638272 117638682 -24632762 - MER63B DNA MER1_type 0 436 4 383 306 69 0 chr9 117638899 117639043 -24632401 - MIR SINE MIR -28 234 81 5618 161 7 42 chr9 117640797 117642238 -24629206 - L1MA6 LINE L1 -1 6299 4930 1274 169 5 0 chr9 117642238 117642445 -24628999 - L1PA16 LINE L1 -9 6157 5950 5618 161 7 42 chr9 117642445 117642817 -24628627 - L1MA6 LINE L1 -1370 4930 4547 391 198 19 9 chr9 117643361 117643467 -24627977 - L1MA8 LINE L1 -10 6281 6175 9077 224 49 47 chr9 117643467 117646931 -24624513 - L1PA12 LINE L1 -3291 4293 7 219 171 24 0 chr9 117647285 117647326 -24624118 + (CTA)n Simple_repeat Simple_repeat 3 44 0 564 297 80 29 chr9 117647326 117647565 -24623879 - MIR SINE MIR -5 257 7 287 224 198 35 chr9 117647756 117647872 -24623572 - MLT1H LTR MaLR -64 485 351 1856 153 36 15 chr9 117647958 117648291 -24623153 - L1MC3 LINE L1 -189 7596 7257 1668 181 130 17 chr9 117648519 117648873 -24622571 - MSTD LTR MaLR -2 394 1 1155 312 34 63 chr9 117648971 117649699 -24621745 + L1PA15 LINE L1 208 914 -5873 16197 209 32 10 chr9 117649722 117653498 -24617946 + L1PA15 LINE L1 1330 5020 -1797 2073 114 7 3 chr9 117653498 117653795 -24617649 + AluSg SINE Alu 1 298 -12 16197 209 32 10 chr9 117653795 117654229 -24617215 + L1PA15 LINE L1 5020 5443 -1374 261 0 0 0 chr9 117654229 117654258 -24617186 + (TA)n Simple_repeat Simple_repeat 2 30 0 16197 209 32 10 chr9 117654258 117655225 -24616219 + L1PA15 LINE L1 5443 6630 -187 213 285 15 15 chr9 117655436 117655566 -24615878 + A-rich Low_complexity Low_complexity 3 132 0 3488 42 2 5 chr9 117658797 117659203 -24612241 + L1PA8 LINE L1 5768 6172 0 934 144 156 6 chr9 117660002 117660182 -24611262 + L1PA15 LINE L1 6610 6816 0 21 0 0 0 chr9 117660351 117660372 -24611072 + AT_rich Low_complexity Low_complexity 1 21 0 261 211 0 0 chr9 117660753 117660805 -24610639 - L2 LINE L2 0 3313 3262 199 326 59 56 chr9 117661152 117661440 -24610004 - L2 LINE L2 -167 3105 2817 605 229 58 43 chr9 117661450 117661638 -24609806 + MIR SINE MIR 58 248 -14 2452 78 3 0 chr9 117662362 117662670 -24608774 + AluY SINE Alu 1 309 -2 1095 274 132 36 chr9 117663355 117664097 -24607347 - L1ME4a LINE L1 -14 6107 5295 1357 189 28 4 chr9 117664244 117664492 -24606952 - MER21B LTR ERV1 -124 739 486 1560 219 56 80 chr9 117664569 117664612 -24606832 - MER21B LTR ERV1 -354 509 467 1856 149 26 33 chr9 117664612 117664914 -24606530 - AluJb SINE Alu -12 300 1 1560 219 56 80 chr9 117664914 117665373 -24606071 - MER21B LTR ERV1 -396 467 19 261 321 160 0 chr9 117665382 117665516 -24605928 - MIR SINE MIR -36 172 17 204 214 18 18 chr9 117666745 117666801 -24604643 - L2 LINE L2 0 3313 3258 4593 149 47 0 chr9 117666815 117667539 -24603905 + L1PA16 LINE L1 5391 6148 -18 1158 273 88 58 chr9 117667544 117668115 -24603329 - MLT1L LTR MaLR -27 588 1 241 316 87 0 chr9 117668128 117668324 -24603120 - L1P5 LINE L1 -669 5482 5270 209 322 88 85 chr9 117668881 117669176 -24602268 + L2 LINE L2 2969 3264 -8 394 229 102 34 chr9 117669566 117669684 -24601760 - MIR SINE MIR -1 261 136 2479 184 68 20 chr9 117670030 117670526 -24600918 + Charlie1b DNA MER1_type 2 521 -2 245 337 153 0 chr9 117670671 117670769 -24600675 - L2 LINE L2 0 3272 3160 316 252 76 50 chr9 117671301 117671454 -24599990 - MER5A DNA MER1_type -28 161 2 269 227 147 27 chr9 117671469 117671544 -24599900 - MER5B DNA MER1_type -10 168 85 2211 119 3 0 chr9 117672035 117672330 -24599114 - AluSp SINE Alu -17 296 1 180 302 0 19 chr9 117672405 117672458 -24598986 - MIR3 SINE MIR -19 189 138 433 311 33 7 chr9 117672492 117672643 -24598801 + MIR3 SINE MIR 29 183 -25 204 97 0 0 chr9 117672743 117672774 -24598670 + (A)n Simple_repeat Simple_repeat 1 31 0 3266 146 35 52 chr9 117672943 117673009 -24598435 - L1MA9 LINE L1 0 6312 6246 2187 127 0 6 chr9 117673009 117673323 -24598121 - AluSx SINE Alu 0 312 1 3266 146 35 52 chr9 117673323 117673790 -24597654 - L1MA9 LINE L1 -66 6246 5772 201 74 0 0 chr9 117673790 117673817 -24597627 + (TA)n Simple_repeat Simple_repeat 2 28 0 3266 146 35 52 chr9 117673817 117673863 -24597581 - L1MA9 LINE L1 -540 5772 5741 2117 106 7 20 chr9 117673863 117674166 -24597278 - AluSp SINE Alu -14 299 1 3266 146 35 52 chr9 117674166 117674221 -24597223 - L1MA9 LINE L1 -571 5741 5687 182 338 0 44 chr9 117674690 117674758 -24596686 - MER5B DNA MER1_type -23 155 91 335 246 205 0 chr9 117675103 117675218 -24596226 - LTR16C LTR ERVL 0 491 352 1766 201 8 36 chr9 117675218 117675610 -24595834 - MSTB1 LTR MaLR 0 432 52 248 307 0 40 chr9 117675599 117675674 -24595770 - LTR16C LTR ERVL -129 362 291 * 881 172 121 40 chr9 117675689 117675887 -24595557 + MER20 DNA MER1_type 1 214 -5 415 323 36 26 chr9 117675880 117676072 -24595372 - LTR16C LTR ERVL -199 292 99 * 677 261 60 47 chr9 117676315 117676495 -24594949 + MIR SINE MIR 5 190 -72 282 56 0 0 chr9 117676495 117676531 -24594913 + (TG)n Simple_repeat Simple_repeat 1 36 0 677 261 60 47 chr9 117676531 117676584 -24594860 + MIR SINE MIR 190 241 -21 489 141 26 0 chr9 117677027 117677105 -24594339 + MADE1 DNA Mariner 1 80 0 244 348 112 12 chr9 117677113 117677274 -24594170 - MER5B DNA MER1_type 0 178 2 198 338 100 0 chr9 117677295 117677375 -24594069 + L2 LINE L2 3173 3260 -12 2454 73 7 0 chr9 117677674 117677976 -24593468 + AluSg SINE Alu 2 305 -5 1959 116 49 7 chr9 117678101 117678386 -24593058 - AluSx SINE Alu -15 297 1 426 306 92 45 chr9 117678453 117678962 -24592482 + L1M4 LINE L1 2235 2767 -3379 613 202 0 0 chr9 117678978 117679097 -24592347 + MER33 DNA MER1_type 2 120 -204 22384 114 18 37 chr9 117679106 117679510 -24591934 + L1P3 LINE L1 5 415 -6046 306 0 0 0 chr9 117679510 117679544 -24591900 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 22384 114 18 37 chr9 117679544 117681614 -24589830 + L1P3 LINE L1 415 2488 -3973 4290 41 8 0 chr9 117681614 117682123 -24589321 + L1PA4 LINE L1 5637 6154 -1 22384 114 18 37 chr9 117682123 117683937 -24587507 + L1P3 LINE L1 2488 4334 -2127 321 267 63 61 chr9 117684057 117684276 -24587168 - MIR SINE MIR -16 246 28 2483 117 11 11 chr9 117684659 117685034 -24586410 - THE1C LTR MaLR 0 375 1 10169 120 30 37 chr9 117685034 117686625 -24584819 - THE1C-int LTR MaLR 0 1580 1 2305 126 21 13 chr9 117686625 117686997 -24584447 - THE1C LTR MaLR 0 375 1 185 280 140 10 chr9 117687159 117687259 -24584185 - L2 LINE L2 -4 3268 3156 237 176 20 20 chr9 117687848 117687899 -24583545 + GA-rich Low_complexity Low_complexity 2 52 0 582 301 177 49 chr9 117687914 117688304 -24583140 - L2 LINE L2 -592 2722 2383 1571 146 6 119 chr9 117688304 117688632 -24582812 - AluSx SINE Alu -11 291 1 582 301 177 49 chr9 117688632 117688709 -24582735 - L2 LINE L2 -931 2383 2317 2453 124 5 16 chr9 117688709 117689088 -24582356 + THE1C LTR MaLR 1 375 0 582 301 177 49 chr9 117689088 117689421 -24582023 - L2 LINE L2 -997 2317 1818 1746 308 121 35 chr9 117689588 117691113 -24580331 - L2 LINE L2 -1471 1843 189 586 291 58 54 chr9 117691535 117691917 -24579527 + L1MC/D LINE L1 5424 5812 -309 2503 76 0 3 chr9 117692086 117692390 -24579054 + AluY SINE Alu 1 303 -8 2222 108 0 9 chr9 117692755 117693070 -24578374 + AluSx SINE Alu 1 312 0 1585 253 72 29 chr9 117693475 117694413 -24577031 - L1ME LINE L1 -457 5705 4722 1699 127 11 124 chr9 117694416 117694771 -24576673 - MER50 LTR ERV1 -23 711 397 1285 98 47 142 chr9 117694765 117695039 -24576405 - MER50 LTR ERV1 -486 248 1 * 1946 231 60 19 chr9 117695039 117695427 -24576017 - L1ME LINE L1 -1425 4721 4292 1710 132 39 4 chr9 117695427 117695707 -24575737 + L1PA15 LINE L1 5873 6162 -3 1946 231 60 19 chr9 117695707 117695999 -24575445 - L1ME LINE L1 -1854 4292 4013 23 33 0 0 chr9 117696541 117696571 -24574873 + AT_rich Low_complexity Low_complexity 1 30 0 217 279 0 0 chr9 117696645 117696706 -24574738 + CT-rich Low_complexity Low_complexity 4 64 0 349 281 12 43 chr9 117696947 117697111 -24574333 + MIR SINE MIR 104 262 0 435 214 105 88 chr9 117697872 117698110 -24573334 - LTR37A LTR ERV1 -184 242 1 15458 157 31 3 chr9 117698317 117700824 -24570620 + L1 LINE L1 14 2590 -4975 1199 210 45 17 chr9 117700819 117701034 -24570410 + L1 LINE L1 5605 5832 -1733 * 246 32 0 0 chr9 117701034 117701065 -24570379 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1199 210 45 17 chr9 117701065 117701140 -24570304 + L1 LINE L1 5832 5903 -1662 4188 95 8 8 chr9 117701148 117701746 -24569698 + L1MA1 LINE L1 5705 6302 0 2090 118 3 40 chr9 117702058 117702380 -24569064 - AluSq SINE Alu -3 310 1 723 226 68 0 chr9 117702994 117703140 -24568304 - MER58A DNA MER1_type 0 158 3 467 272 84 44 chr9 117704219 117704469 -24566975 + MIR SINE MIR 2 261 -1 182 294 0 0 chr9 117704936 117704987 -24566457 - L2 LINE L2 -15 3257 3207 288 345 20 20 chr9 117705393 117705541 -24565903 - MIR3 SINE MIR -55 153 6 230 275 233 0 chr9 117705891 117706011 -24565433 - MER5A DNA MER1_type -1 188 41 433 200 0 11 chr9 117706073 117706163 -24565281 - MER5B DNA MER1_type -39 139 51 892 137 101 0 chr9 117706195 117706363 -24565081 + L1MA6 LINE L1 6116 6300 0 2284 101 7 3 chr9 117706625 117706931 -24564513 - AluSp SINE Alu -6 307 1 525 372 16 40 chr9 117707074 117707501 -24563943 - L2 LINE L2 -2 3270 2854 519 278 91 46 chr9 117707590 117707737 -24563707 + MIR SINE MIR 10 174 -88 2290 105 0 3 chr9 117707737 117708032 -24563412 - AluSg SINE Alu -16 294 1 519 278 91 46 chr9 117708032 117708125 -24563319 + MIR SINE MIR 174 261 -1 21 0 0 0 chr9 117709070 117709091 -24562353 + AT_rich Low_complexity Low_complexity 1 21 0 361 242 32 64 chr9 117709682 117709823 -24561621 + L1MC/D LINE L1 5686 5815 -349 1838 152 0 0 chr9 117710430 117710694 -24560750 + AluSx SINE Alu 1 264 -48 189 0 0 0 chr9 117710765 117710786 -24560658 + (TG)n Simple_repeat Simple_repeat 1 21 0 285 313 15 52 chr9 117712483 117712568 -24558876 - MIR3 SINE MIR -21 187 107 4537 163 36 19 chr9 117712568 117713348 -24558096 - MER54B LTR ERVL 0 793 1 285 313 15 52 chr9 117713348 117713396 -24558048 - MIR3 SINE MIR -101 107 59 221 106 0 43 chr9 117715243 117715290 -24556154 + (TGGGGG)n Simple_repeat Simple_repeat 3 47 0 253 226 16 0 chr9 117715296 117715358 -24556086 - Charlie8 DNA MER1_type -17 2400 2338 28 0 0 0 chr9 117715798 117715826 -24555618 + AT_rich Low_complexity Low_complexity 1 28 0 331 290 29 36 chr9 117715895 117716033 -24555411 - MIR SINE MIR -25 237 101 707 321 0 0 chr9 117717448 117717669 -24553775 - MIR SINE MIR -4 258 38 213 270 191 8 chr9 117717763 117717979 -24553465 + L2 LINE L2 2933 3268 -4 189 301 62 18 chr9 117718533 117718646 -24552798 + L3 LINE CR1 1155 1272 -305 221 276 17 0 chr9 117718824 117718882 -24552562 + L3 LINE CR1 1387 1445 -132 513 114 13 0 chr9 117719214 117719293 -24552151 - MADE1 DNA Mariner 0 80 1 230 288 0 0 chr9 117719685 117719751 -24551693 - MIR SINE MIR -106 102 37 363 316 35 18 chr9 117720061 117720232 -24551212 - MIR3 SINE MIR -17 191 18 232 319 97 11 chr9 117720598 117720800 -24550644 + MIR SINE MIR 42 259 -3 256 95 48 95 chr9 117721205 117721268 -24550176 - HSMAR1 DNA Mariner 0 1287 1228 471 272 30 24 chr9 117721797 117721966 -24549478 + MIR SINE MIR 37 206 -56 1859 93 0 4 chr9 117722149 117722386 -24549058 - AluSc SINE Alu -40 269 34 182 271 0 17 chr9 117722779 117722838 -24548606 - MIR SINE MIR -66 142 85 470 294 52 22 chr9 117723386 117723611 -24547833 + MIR SINE MIR 25 259 -3 206 390 37 0 chr9 117724395 117724477 -24546967 - MIR SINE MIR -70 192 108 293 291 87 0 chr9 117725022 117725125 -24546319 - MIR3 SINE MIR 0 208 97 397 251 49 26 chr9 117725306 117725457 -24545987 + MIR SINE MIR 42 187 -60 480 188 0 0 chr9 117725513 117725593 -24545851 - MADE1 DNA Mariner 0 80 1 856 232 21 5 chr9 117726413 117726607 -24544837 + MER58A DNA MER1_type 28 224 0 256 297 101 74 chr9 117727040 117727188 -24544256 + MIR3 SINE MIR 14 165 -43 389 302 16 0 chr9 117727353 117727482 -24543962 - MIR SINE MIR -15 247 117 268 372 0 0 chr9 117728084 117728178 -24543266 - MIR SINE MIR -62 146 53 1068 182 0 0 chr9 117728184 117728349 -24543095 - AluJb SINE Alu -16 296 132 2026 114 7 0 chr9 117728356 117728629 -24542815 - AluSg SINE Alu -35 275 1 341 222 32 16 chr9 117728934 117729060 -24542384 + (TA)n Simple_repeat Simple_repeat 1 128 0 218 279 0 0 chr9 117730115 117730176 -24541268 - L2 LINE L2 -2 3270 3210 21 0 0 0 chr9 117730220 117730241 -24541203 + AT_rich Low_complexity Low_complexity 1 21 0 341 275 158 70 chr9 117730305 117730404 -24541040 - MER5A DNA MER1_type -1 188 99 2201 115 0 0 chr9 117730404 117730699 -24540745 - AluSx SINE Alu -17 295 1 341 275 158 70 chr9 117730699 117730770 -24540674 - MER5A DNA MER1_type -90 99 3 222 338 0 0 chr9 117731042 117731119 -24540325 - MIR3 SINE MIR -14 194 118 274 356 11 0 chr9 117732278 117732368 -24539076 - MIR SINE MIR -170 92 2 392 190 66 8 chr9 117732578 117732680 -24538764 - MER5A DNA MER1_type -77 112 4 851 283 21 77 chr9 117733012 117733237 -24538207 + L1MC4 LINE L1 7097 7333 -709 2106 145 0 0 chr9 117733237 117733548 -24537896 - AluSx SINE Alu -1 311 1 851 283 21 77 chr9 117733548 117733841 -24537603 + L1MC4 LINE L1 7333 7586 -456 519 168 210 8 chr9 117733868 117733987 -24537457 - MER5A DNA MER1_type 0 189 47 438 258 215 34 chr9 117734089 117734387 -24537057 + L1MC4 LINE L1 7690 8041 -1 866 183 7 7 chr9 117734749 117734902 -24536542 - LTR32 LTR ERVL -2 469 317 2031 161 24 6 chr9 117734958 117735293 -24536151 - LTR32 LTR ERVL -119 352 12 22 56 0 0 chr9 117735401 117735437 -24536007 + AT_rich Low_complexity Low_complexity 1 36 0 493 244 122 44 chr9 117735437 117735642 -24535802 + LTR68 LTR ERV1 220 440 -300 1740 51 9 5 chr9 117735963 117736179 -24535265 + AluY SINE Alu 86 302 -9 452 251 39 73 chr9 117736285 117736561 -24534883 + L1MC4a LINE L1 5769 6034 -87 202 125 68 11 chr9 117736640 117736728 -24534716 + (TATAA)n Simple_repeat Simple_repeat 3 95 0 333 182 15 45 chr9 117736739 117736871 -24534573 + (TATAA)n Simple_repeat Simple_repeat 1 128 0 280 228 139 79 chr9 117736950 117737051 -24534393 + L2 LINE L2 3193 3299 -14 221 307 23 11 chr9 117738046 117738134 -24533310 + MIR SINE MIR 58 146 -62 259 87 67 39 chr9 117739605 117739709 -24531735 + (TA)n Simple_repeat Simple_repeat 1 107 0 22 0 0 0 chr9 117739720 117739742 -24531702 + AT_rich Low_complexity Low_complexity 1 22 0 330 87 0 0 chr9 117740333 117740379 -24531065 + (TG)n Simple_repeat Simple_repeat 1 46 0 301 183 58 25 chr9 117740851 117740971 -24530473 + (TG)n Simple_repeat Simple_repeat 1 124 0 301 105 84 0 chr9 117740989 117741084 -24530360 + (TG)n Simple_repeat Simple_repeat 1 103 0 368 312 70 33 chr9 117741093 117741308 -24530136 - MIR SINE MIR -17 245 23 216 191 0 0 chr9 117742575 117742617 -24528827 + L2 LINE L2 2720 2761 -553 195 338 28 14 chr9 117742944 117743015 -24528429 - MIR3 SINE MIR -32 176 105 2112 116 7 26 chr9 117743085 117743395 -24528049 - AluSg SINE Alu -6 304 1 441 214 107 57 chr9 117744161 117744320 -24527124 + MER5A DNA MER1_type 23 189 0 229 322 92 11 chr9 117744365 117744452 -24526992 - MIR SINE MIR -92 170 77 363 44 0 0 chr9 117744609 117744654 -24526790 - MADE1 DNA Mariner 0 80 36 862 288 28 0 chr9 117744952 117745167 -24526277 + MER58A DNA MER1_type 4 224 0 3381 170 8 6 chr9 117745253 117745961 -24525483 + L1MA4A LINE L1 5508 6278 -25 542 63 13 0 chr9 117746201 117746280 -24525164 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 330 304 120 16 chr9 117746984 117747109 -24524335 - L2 LINE L2 -24 3289 3152 371 346 76 5 chr9 117747668 117747853 -24523591 - MIR SINE MIR 0 262 65 961 202 16 27 chr9 117747891 117748079 -24523365 - AluJo SINE Alu -126 186 1 189 0 0 0 chr9 117748431 117748452 -24522992 + (T)n Simple_repeat Simple_repeat 1 21 0 195 129 0 0 chr9 117748733 117748764 -24522680 + (GA)n Simple_repeat Simple_repeat 2 32 0 792 135 0 53 chr9 117749772 117749905 -24521539 - AluJ SINE Alu -5 307 182 966 202 16 27 chr9 117750124 117750312 -24521132 - AluJ SINE Alu -126 186 1 2070 115 19 6 chr9 117750468 117750790 -24520654 - HSMAR2 DNA Mariner -976 326 1 25 0 0 0 chr9 117751098 117751123 -24520321 + AT_rich Low_complexity Low_complexity 1 25 0 414 247 180 27 chr9 117751721 117751871 -24519573 - MER5A DNA MER1_type -7 182 10 23 0 0 0 chr9 117752393 117752416 -24519028 + AT_rich Low_complexity Low_complexity 1 23 0 231 256 58 12 chr9 117752469 117752555 -24518889 + MLT1J LTR MaLR 83 172 -339 402 229 7 111 chr9 117752745 117752889 -24518555 + MER94 DNA DNA 6 134 0 266 345 101 0 chr9 117753078 117753197 -24518247 - MIR3 SINE MIR -75 133 3 345 201 2 72 chr9 117753201 117753313 -24518131 - MLT1J2 LTR MaLR 0 450 340 437 234 53 83 chr9 117753348 117753407 -24518037 - MLT1J1 LTR MaLR -243 207 148 477 84 0 0 chr9 117753407 117753478 -24517966 + (TA)n Simple_repeat Simple_repeat 1 71 0 437 234 53 83 chr9 117753478 117753611 -24517833 - MLT1J1 LTR MaLR -302 148 21 2177 166 11 37 chr9 117753748 117753960 -24517484 - MLT1A2 LTR MaLR -4 370 171 2894 12 0 3 chr9 117753960 117754279 -24517165 - AluYb8 SINE Alu 0 318 1 2177 166 11 37 chr9 117754279 117754446 -24516998 - MLT1A2 LTR MaLR -203 171 1 307 277 75 11 chr9 117754693 117754787 -24516657 - L2 LINE L2 -1 3271 3172 214 384 23 0 chr9 117754933 117755019 -24516425 - L2 LINE L2 -195 3077 2990 363 228 0 73 chr9 117755061 117755137 -24516307 - MIR SINE MIR -12 250 185 1436 102 117 0 chr9 117755137 117755343 -24516101 + MER30 DNA MER1_type 1 230 0 363 228 0 73 chr9 117755343 117755389 -24516055 - MIR SINE MIR -77 185 137 328 303 101 37 chr9 117756247 117756435 -24515009 - L2 LINE L2 0 3313 3114 856 273 189 22 chr9 117756489 117756933 -24514511 + LTR33 LTR ERVL 1 518 -3 290 356 46 23 chr9 117756944 117757163 -24514281 - L2 LINE L2 -225 3047 2824 224 358 0 12 chr9 117757243 117757324 -24514120 - L2 LINE L2 -211 3061 2982 2162 114 0 22 chr9 117758077 117758393 -24513051 + AluSc SINE Alu 1 309 0 181 278 0 0 chr9 117758789 117758825 -24512619 + L2 LINE L2 3257 3292 -21 1571 99 80 0 chr9 117758911 117759124 -24512320 - MER30 DNA MER1_type 0 230 1 1082 105 4 8 chr9 117759375 117759626 -24511818 + (TTTC)n Simple_repeat Simple_repeat 1 250 0 2357 102 0 0 chr9 117759630 117759935 -24511509 - AluSx SINE Alu -7 305 1 190 189 0 0 chr9 117760088 117760125 -24511319 - L2 LINE L2 -4 3309 3273 273 305 69 35 chr9 117760126 117760164 -24511280 - MIR SINE MIR -13 249 214 2027 128 0 3 chr9 117760164 117760454 -24510990 - AluSx SINE Alu -23 289 1 273 305 69 35 chr9 117760454 117760589 -24510855 - MIR SINE MIR -48 214 70 343 175 32 16 chr9 117760594 117760657 -24510787 + MER81 DNA DNA 1 64 -50 271 293 104 9 chr9 117760668 117760774 -24510670 + MIR SINE MIR 25 140 -68 510 281 55 21 chr9 117761107 117761345 -24510099 - L2 LINE L2 -179 3093 2848 606 298 31 0 chr9 117761466 117761657 -24509787 - MIR SINE MIR -17 245 49 1743 181 58 112 chr9 117762256 117762809 -24508635 + Charlie1b DNA MER1_type 1 523 0 416 296 75 24 chr9 117763998 117764211 -24507233 + L2 LINE L2 2915 3138 -175 1989 250 87 65 chr9 117764258 117764755 -24506689 - HAL1 LINE L1 -33 2474 1990 1121 197 0 67 chr9 117764755 117764994 -24506450 - MER58A DNA MER1_type 0 224 2 1989 250 87 65 chr9 117764994 117765573 -24505871 - HAL1 LINE L1 -517 1990 1374 1906 168 3 3 chr9 117766074 117766371 -24505073 - AluSx SINE Alu -15 297 1 248 256 156 11 chr9 117766409 117766499 -24504945 + L2 LINE L2 3164 3266 -6 1682 179 14 3 chr9 117766905 117767202 -24504242 + AluJb SINE Alu 3 302 -10 188 340 64 7 chr9 117767205 117767346 -24504098 - L2 LINE L2 -888 2426 2278 258 333 88 9 chr9 117767396 117767510 -24503934 - MIR3 SINE MIR -77 131 9 291 294 39 0 chr9 117768586 117768688 -24502756 + MIR SINE MIR 47 152 -110 408 20 0 0 chr9 117768696 117768745 -24502699 + (CA)n Simple_repeat Simple_repeat 2 50 0 232 152 65 0 chr9 117769058 117769104 -24502340 + GA-rich Low_complexity Low_complexity 4 52 0 365 360 66 0 chr9 117769316 117769452 -24501992 - L2 LINE L2 -5 3267 3123 448 281 138 14 chr9 117769530 117769747 -24501697 + MIR SINE MIR 1 244 -18 875 214 62 0 chr9 117770500 117770678 -24500766 - MER5A DNA MER1_type 0 189 1 1420 294 75 30 chr9 117771005 117771614 -24499830 + HAL1 LINE L1 3 639 -1868 1086 104 0 0 chr9 117772142 117772286 -24499158 - AluSq SINE Alu -17 296 153 4664 63 28 3 chr9 117772286 117773292 -24498152 - MER11A LTR ERVK 0 1266 1 233 170 0 43 chr9 117773292 117773336 -24498108 - AluSq SINE Alu -144 157 116 710 205 0 0 chr9 117773345 117773462 -24497982 - FLAM_C SINE Alu -16 117 1 556 262 40 157 chr9 117773930 117774429 -24497015 - L1M LINE L1 -744 5402 5080 1132 283 84 46 chr9 117774429 117774931 -24496513 - LTR33A LTR ERVL 0 523 3 556 262 40 157 chr9 117774931 117775341 -24496103 - L1M LINE L1 -1066 5080 4623 474 287 98 0 chr9 117775437 117775580 -24495864 - MLT1I LTR MaLR -250 159 3 451 156 22 22 chr9 117775893 117775983 -24495461 + L1MB8 LINE L1 5638 5727 -457 520 80 0 53 chr9 117776007 117776093 -24495351 + L1MB8 LINE L1 5858 5947 -231 404 73 0 0 chr9 117776093 117776148 -24495296 + L1MB8 LINE L1 6124 6178 0 520 80 0 53 chr9 117776148 117776162 -24495282 + L1MB8 LINE L1 5947 6178 0 23 0 0 0 chr9 117776494 117776517 -24494927 + AT_rich Low_complexity Low_complexity 1 23 0 941 148 0 0 chr9 117776552 117776694 -24494750 + FLAM_C SINE Alu 1 142 -1 245 228 59 40 chr9 117776699 117776800 -24494644 - L1ME4a LINE L1 -38 6083 5981 2351 95 0 0 chr9 117776994 117777289 -24494155 - AluSc SINE Alu -14 295 1 351 377 22 16 chr9 117777492 117777563 -24493881 - MIR SINE MIR -42 220 151 5325 116 23 22 chr9 117777563 117778341 -24493103 + MER4E LTR ERV1 1 779 0 351 377 22 16 chr9 117778341 117778452 -24492992 - MIR SINE MIR -111 151 37 259 296 143 10 chr9 117778743 117778841 -24492603 + MIR3 SINE MIR 88 198 -10 264 267 78 9 chr9 117779004 117779120 -24492324 + L2 LINE L2 3148 3271 -1 1053 283 73 38 chr9 117779128 117779605 -24491839 + MLT1J LTR MaLR 5 498 -13 1814 175 13 0 chr9 117779628 117779936 -24491508 + AluJo SINE Alu 1 312 0 2672 236 61 22 chr9 117780385 117782075 -24489369 + L1MDa LINE L1 1564 3331 -3209 431 184 19 19 chr9 117782117 117782220 -24489224 - L1M4 LINE L1 -3130 3016 2914 2272 311 42 8 chr9 117782225 117783060 -24488384 + HERV16 LTR ERVL 2270 3015 -1981 596 302 30 60 chr9 117783077 117783408 -24488036 + HERV16 LTR ERVL 3307 3627 -2137 1087 159 11 0 chr9 117783813 117783989 -24487455 - LTR38 LTR ERV1 -6 550 373 8344 34 7 0 chr9 117783989 117784975 -24486469 - L1PA4 LINE L1 -1727 4419 3427 7877 40 6 0 chr9 117784975 117786686 -24484758 + L1PA4 LINE L1 4439 6155 0 2356 120 34 26 chr9 117786686 117787069 -24484375 - LTR38 LTR ERV1 -170 386 1 302 256 44 0 chr9 117787266 117787356 -24484088 + L1ME4a LINE L1 5731 5824 -297 1632 187 10 17 chr9 117787404 117787693 -24483751 - AluJo SINE Alu -25 287 1 336 290 76 23 chr9 117787849 117788111 -24483333 + L1ME4a LINE L1 5835 6110 -11 258 322 111 17 chr9 117788451 117788631 -24482813 + L3 LINE CR1 1116 1312 -265 1926 191 3 17 chr9 117789373 117789730 -24481714 - MLT1A1 LTR MaLR 0 365 14 1716 219 21 21 chr9 117790198 117790572 -24480872 + MLT1A2 LTR MaLR 1 374 0 215 318 78 23 chr9 117791249 117791378 -24480066 + MIR3 SINE MIR 38 173 -35 733 254 5 53 chr9 117791570 117791779 -24479665 - MLT1J LTR MaLR -312 199 1 1030 201 128 21 chr9 117791926 117792214 -24479230 - MER33 DNA MER1_type 0 324 6 313 275 11 11 chr9 117792474 117792565 -24478879 + MIR SINE MIR 52 142 -120 847 290 49 3 chr9 117793035 117793363 -24478081 + L1ME4a LINE L1 5517 5859 -262 748 250 21 31 chr9 117793561 117793753 -24477691 - MER20 DNA MER1_type 0 219 30 434 150 18 106 chr9 117793829 117793942 -24477502 + MER110A LTR ERV1 81 183 -285 234 290 21 0 chr9 117794025 117794118 -24477326 + MER110 LTR ERV1 177 271 -220 279 248 152 0 chr9 117794160 117794265 -24477179 + MER110 LTR ERV1 367 487 -4 2150 101 0 4 chr9 117794282 117794590 -24476854 - AluSg SINE Alu 0 311 5 233 106 0 43 chr9 117794875 117794922 -24476522 + (CATA)n Simple_repeat Simple_repeat 2 46 0 327 289 40 64 chr9 117795457 117795630 -24475814 + MIR SINE MIR 48 216 -46 184 283 0 0 chr9 117796186 117796239 -24475205 - MIR SINE MIR -161 101 49 2576 116 103 2 chr9 117797216 117797623 -24473821 - MER83 LTR ERV1 0 448 1 2069 116 7 10 chr9 117798070 117798372 -24473072 + AluSx SINE Alu 1 301 -11 228 352 108 36 chr9 117798889 117799196 -24472248 + L2 LINE L2 2907 3235 -37 199 300 69 46 chr9 117799342 117799472 -24471972 + MIR3 SINE MIR 3 135 -73 198 0 0 0 chr9 117800231 117800253 -24471191 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 198 288 51 0 chr9 117800260 117800319 -24471125 - L2 LINE L2 -14 3258 3197 212 163 47 0 chr9 117800322 117800365 -24471079 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 212 266 47 0 chr9 117800523 117800587 -24470857 - L2 LINE L2 -192 3080 3014 231 36 0 0 chr9 117800994 117801022 -24470422 + (TG)n Simple_repeat Simple_repeat 1 28 0 231 146 0 0 chr9 117801420 117801475 -24469969 + (T)n Simple_repeat Simple_repeat 1 55 0 276 370 37 15 chr9 117801636 117801771 -24469673 + L2 LINE L2 3124 3261 -11 1782 93 4 17 chr9 117801961 117802197 -24469247 - AluSp SINE Alu -80 233 1 331 274 32 11 chr9 117802326 117802421 -24469023 - MIR SINE MIR -150 112 16 241 261 0 0 chr9 117802943 117803008 -24468436 + MIR SINE MIR 57 121 -141 252 315 37 0 chr9 117803438 117803546 -24467898 + MIR SINE MIR 34 145 -63 29 0 0 0 chr9 117804009 117804038 -24467406 + AT_rich Low_complexity Low_complexity 1 29 0 330 290 20 75 chr9 117804492 117804744 -24466700 - MER113 DNA MER1_type? -135 386 149 671 214 19 13 chr9 117804747 117804906 -24466538 - MER104 DNA Tc2 -1 179 20 272 286 151 16 chr9 117805072 117805198 -24466246 - MIR SINE MIR -76 186 44 1796 181 13 19 chr9 117805568 117805877 -24465567 - AluSx SINE Alu -5 307 1 288 281 165 7 chr9 117805890 117806025 -24465419 - MIR SINE MIR -56 206 53 4540 155 42 30 chr9 117806046 117806936 -24464508 - L1MD1 LINE L1 0 6242 5343 6888 137 48 6 chr9 117806936 117808087 -24463357 + Tigger3b DNA MER2_type 2 1200 -31 302 147 29 0 chr9 117808151 117808219 -24463225 - L1MD2 LINE L1 0 6359 6290 3954 187 62 13 chr9 117808219 117809057 -24462387 + L1MB8 LINE L1 5288 6166 -12 1016 212 4 52 chr9 117809079 117809329 -24462115 - L1MD2 LINE L1 -56 6303 6066 4509 58 14 2 chr9 117810502 117811073 -24460371 - L1PA10 LINE L1 -11 6157 5580 22 35 0 0 chr9 117811163 117811192 -24460252 + AT_rich Low_complexity Low_complexity 1 29 0 379 126 13 5 chr9 117811431 117811508 -24459936 - MLT2D LTR ERVL -1 519 369 252 86 0 0 chr9 117811520 117811555 -24459889 + (GA)n Simple_repeat Simple_repeat 2 36 0 1985 164 33 3 chr9 117811578 117811913 -24459531 - MLT2D LTR ERVL -69 345 1 1741 144 29 45 chr9 117812739 117813052 -24458392 - AluJo SINE Alu -4 308 1 312 360 29 7 chr9 117813865 117814004 -24457440 - L1ME LINE L1 -391 5771 5630 248 362 43 0 chr9 117814059 117814153 -24457291 + L2 LINE L2 3125 3222 -50 223 237 95 0 chr9 117814334 117814377 -24457067 - MIR SINE MIR -65 143 105 1629 123 0 63 chr9 117814377 117814630 -24456814 + AluSx SINE Alu 38 274 -38 223 237 95 0 chr9 117814630 117814669 -24456775 - MIR SINE MIR -103 105 46 186 261 87 0 chr9 117814912 117814981 -24456463 - MIR3 SINE MIR -6 202 128 367 267 155 6 chr9 117815318 117815479 -24455965 - MLT1J2 LTR MaLR 0 450 266 194 195 26 91 chr9 117815625 117815702 -24455742 + MIR SINE MIR 104 175 -87 351 221 107 15 chr9 117816171 117816302 -24455142 + MIR SINE MIR 117 259 -3 271 210 174 58 chr9 117816727 117816865 -24454579 - LTR16C LTR ERVL -23 468 315 227 277 46 0 chr9 117817182 117817247 -24454197 + L2 LINE L2 3011 3078 -235 2400 96 0 10 chr9 117817411 117817724 -24453720 + AluSx SINE Alu 3 312 0 597 247 6 6 chr9 117818803 117818969 -24452475 + MIR SINE MIR 97 262 0 380 344 52 16 chr9 117819778 117819970 -24451474 - MIR SINE MIR -13 249 51 392 346 34 14 chr9 117820917 117821125 -24450319 - L3 LINE CR1 -150 1427 1216 450 274 163 43 chr9 117822408 117823009 -24448435 - L2 LINE L2 -4 3309 2652 190 287 139 16 chr9 117823852 117823981 -24447463 - MIR SINE MIR -70 192 48 266 263 0 12 chr9 117824167 117824247 -24447197 + MIR SINE MIR 61 139 -69 2386 93 7 0 chr9 117824291 117824591 -24446853 - AluSx SINE Alu -10 302 1 525 362 55 6 chr9 117825299 117825625 -24445819 + L2 LINE L2 2508 2849 -465 285 274 24 0 chr9 117825713 117825797 -24445647 + L2 LINE L2 2965 3050 -222 232 299 158 55 chr9 117826503 117826667 -24444777 + L2 LINE L2 3132 3312 -1 301 329 93 19 chr9 117826722 117826938 -24444506 + MIR SINE MIR 20 251 -11 486 302 107 51 chr9 117826964 117827490 -24443954 - LTR67 LTR ERVL -1 556 2 445 328 98 31 chr9 117827650 117828007 -24443437 - LTR33 LTR ERVL -130 391 11 203 265 0 0 chr9 117828831 117828880 -24442564 + L3 LINE CR1 1426 1474 -103 317 373 22 8 chr9 117829091 117829225 -24442219 + MIR SINE MIR 20 155 -107 * 698 256 99 5 chr9 117829218 117829429 -24442015 - MIR SINE MIR -1 261 31 1889 135 0 40 chr9 117829581 117829885 -24441559 - AluJo SINE Alu -3 309 18 183 80 0 0 chr9 117830179 117830204 -24441240 + (CAT)n Simple_repeat Simple_repeat 3 27 0 207 0 0 0 chr9 117830833 117830856 -24440588 + (GA)n Simple_repeat Simple_repeat 2 24 0 223 274 82 0 chr9 117831437 117831510 -24439934 + MIR SINE MIR 178 256 -6 240 320 39 0 chr9 117831954 117832057 -24439387 - MIR SINE MIR -83 125 19 199 242 40 111 chr9 117832614 117832713 -24438731 + MER5B DNA MER1_type 68 159 -19 312 219 176 42 chr9 117833000 117833119 -24438325 + MIR SINE MIR 17 151 -57 345 285 51 15 chr9 117833882 117834019 -24437425 + MIR SINE MIR 2 143 -119 387 317 67 6 chr9 117835163 117835343 -24436101 + MIR SINE MIR 66 256 -6 247 254 69 31 chr9 117835436 117835566 -24435878 + L3 LINE CR1 1400 1534 -43 340 165 35 87 chr9 117835574 117835689 -24435755 + MER5A DNA MER1_type 9 117 -72 2026 142 3 0 chr9 117836350 117836401 -24435043 + AluSx SINE Alu 3 52 -260 185 35 69 0 chr9 117836401 117836430 -24435014 + G-rich Low_complexity Low_complexity 51 81 0 2026 142 3 0 chr9 117836430 117836680 -24434764 + AluSx SINE Alu 52 305 -7 2085 121 0 0 chr9 117836856 117837164 -24434280 + AluSx SINE Alu 1 308 0 2883 118 88 4 chr9 117837444 117837908 -24433536 + MER84 LTR ERV1 1 503 -4 2051 120 37 51 chr9 117838128 117838479 -24432965 + MER4C LTR ERV1 1 346 -119 312 27 0 0 chr9 117838479 117838516 -24432928 + (A)n Simple_repeat Simple_repeat 1 37 0 892 164 0 87 chr9 117838542 117838725 -24432719 + MER4C LTR ERV1 299 465 0 299 336 28 76 chr9 117839075 117839215 -24432229 + MIR SINE MIR 20 144 -118 962 143 51 6 chr9 117839215 117839390 -24432054 + L1MC1 LINE L1 6145 6327 -6 299 336 28 76 chr9 117839390 117839499 -24431945 + MIR SINE MIR 144 257 -5 184 250 19 0 chr9 117839624 117839676 -24431768 - L2 LINE L2 0 3272 3220 301 368 36 10 chr9 117840723 117840916 -24430528 - MIR SINE MIR -30 232 35 818 126 14 28 chr9 117841584 117841727 -24429717 + MLT2D LTR ERVL 1 141 -273 187 350 12 12 chr9 117841933 117842013 -24429431 - L2 LINE L2 -553 2761 2682 377 271 84 18 chr9 117842056 117842222 -24429222 - MER5B DNA MER1_type 0 178 2 208 372 9 9 chr9 117842640 117842753 -24428691 - MIR SINE MIR -75 133 21 452 267 7 7 chr9 117843030 117843165 -24428279 - MIR3 SINE MIR -1 207 73 587 312 69 71 chr9 117843220 117843797 -24427647 + HAL1 LINE L1 4 579 -1928 865 254 65 67 chr9 117843817 117844247 -24427197 + HAL1 LINE L1 710 1138 -1369 183 188 0 0 chr9 117844523 117844555 -24426889 + MER5B DNA MER1_type 1 32 -146 340 233 241 9 chr9 117844941 117845057 -24426387 + MIR3 SINE MIR 29 171 -37 604 200 9 0 chr9 117846370 117846480 -24424964 + MER81 DNA DNA 4 114 0 194 0 39 0 chr9 117847055 117847081 -24424363 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2114 125 3 0 chr9 117847084 117847372 -24424072 - AluSx SINE Alu -23 289 1 22 0 0 0 chr9 117847604 117847626 -24423818 + AT_rich Low_complexity Low_complexity 1 22 0 305 246 175 24 chr9 117848037 117848163 -24423281 + MIR SINE MIR 9 153 -109 2264 115 0 6 chr9 117848361 117848675 -24422769 - AluSx SINE Alu 0 312 1 222 228 187 32 chr9 117849181 117849304 -24422140 - MIR3 SINE MIR -63 145 4 486 234 222 12 chr9 117849722 117849893 -24421551 + MIR SINE MIR 20 226 -36 235 384 105 6 chr9 117850052 117850224 -24421220 - MIR SINE MIR -54 208 20 273 287 99 30 chr9 117851187 117851288 -24420156 - L3 LINE CR1 -83 1494 1387 593 283 22 0 chr9 117852996 117853176 -24418268 + MIR SINE MIR 68 251 -11 212 0 36 0 chr9 117853282 117853310 -24418134 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 195 331 125 7 chr9 117853453 117853589 -24417855 - MIR SINE MIR -26 236 85 306 106 0 0 chr9 117853930 117853977 -24417467 + (CA)n Simple_repeat Simple_repeat 2 48 0 401 298 35 14 chr9 117854598 117854739 -24416705 + MIR3 SINE MIR 65 208 0 1684 170 0 50 chr9 117854870 117855227 -24416217 - AluJb SINE Alu 0 342 1 180 158 0 0 chr9 117855549 117855587 -24415857 + (AGATG)n Simple_repeat Simple_repeat 2 39 0 484 284 118 5 chr9 117855669 117855880 -24415564 - MIR SINE MIR -3 259 25 561 181 107 13 chr9 117857016 117857165 -24414279 - MER103 DNA DNA -3 163 1 445 283 72 18 chr9 117858240 117858406 -24413038 - MIR SINE MIR -63 199 25 359 303 70 49 chr9 117858902 117859087 -24412357 - MIR SINE MIR -54 208 20 183 80 0 0 chr9 117859177 117859202 -24412242 + (T)n Simple_repeat Simple_repeat 1 25 0 246 351 91 25 chr9 117860256 117860498 -24410946 - MIR SINE MIR -3 259 2 310 265 20 20 chr9 117860874 117860972 -24410472 - MIR SINE MIR -91 117 20 261 83 0 0 chr9 117861061 117861097 -24410347 + (T)n Simple_repeat Simple_repeat 1 36 0 339 74 41 0 chr9 117861522 117861576 -24409868 + L1MA7 LINE L1 5736 5791 -392 275 150 17 0 chr9 117861580 117861640 -24409804 + (TA)n Simple_repeat Simple_repeat 1 61 0 2837 130 42 24 chr9 117861643 117862021 -24409423 + L1MA7 LINE L1 5783 6174 -117 333 0 0 0 chr9 117862021 117862058 -24409386 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2837 130 42 24 chr9 117862058 117862179 -24409265 + L1MA7 LINE L1 6174 6291 0 22 0 0 0 chr9 117862766 117862788 -24408656 + AT_rich Low_complexity Low_complexity 1 22 0 475 237 51 32 chr9 117862956 117863112 -24408332 - MER103 DNA DNA 0 166 8 645 318 41 12 chr9 117869850 117870095 -24401349 + MIR SINE MIR 5 256 -6 354 315 54 0 chr9 117871691 117871840 -24399604 - MIR SINE MIR -16 246 90 1998 149 0 7 chr9 117871850 117872146 -24399298 + AluJo SINE Alu 5 298 -14 260 247 0 32 chr9 117872156 117872249 -24399195 - L1MC4 LINE L1 -1339 6703 6614 * 290 221 35 0 chr9 117872170 117872256 -24399188 + L1MC4 LINE L1 6614 6702 -1340 216 276 17 0 chr9 117873926 117873984 -24397460 - MER91 DNA MER1_type -2 138 80 2288 110 0 0 chr9 117874635 117874936 -24396508 + AluSx SINE Alu 1 301 -11 1944 123 0 0 chr9 117875178 117875446 -24395998 + AluSx SINE Alu 38 305 -7 1546 237 9 12 chr9 117876139 117876472 -24394972 + MER58B DNA MER1_type 1 332 -9 21 36 0 0 chr9 117877001 117877029 -24394415 + AT_rich Low_complexity Low_complexity 1 28 0 343 350 73 14 chr9 117878165 117878385 -24393059 + L2 LINE L2 2818 3050 -222 249 256 128 0 chr9 117878546 117878624 -24392820 + L2 LINE L2 3226 3313 0 262 169 31 0 chr9 117878914 117878979 -24392465 + GA-rich Low_complexity Low_complexity 2 68 0 213 207 0 35 chr9 117879290 117879348 -24392096 + (GGGTG)n Simple_repeat Simple_repeat 3 58 0 1275 89 0 0 chr9 117879348 117879527 -24391917 + (TCCC)n Simple_repeat Simple_repeat 1 179 0 249 33 0 0 chr9 117879527 117879557 -24391887 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 581 330 66 29 chr9 117879706 117880211 -24391233 - L2 LINE L2 -15 3298 2776 330 272 33 0 chr9 117881375 117881467 -24389977 + GA-rich Low_complexity Low_complexity 6 100 0 887 254 119 57 chr9 117881713 117882150 -24389294 + MLT1J LTR MaLR 3 466 -45 301 273 45 58 chr9 117883622 117883776 -24387668 + MIR SINE MIR 37 188 -74 * 2940 184 20 42 chr9 117883765 117883929 -24387515 + L1MD2 LINE L1 5757 5923 -436 1782 171 108 27 chr9 117883929 117884263 -24387181 + MLT1A1 LTR MaLR 1 361 -4 2940 184 20 42 chr9 117884263 117884712 -24386732 + L1MD2 LINE L1 5923 6359 0 2249 97 0 0 chr9 117885195 117885494 -24385950 + AluSc SINE Alu 1 299 0 2054 116 3 17 chr9 117886587 117886754 -24384690 - AluSc SINE Alu -11 298 135 2358 62 20 7 chr9 117886754 117887046 -24384398 - AluY SINE Alu -15 296 1 2054 116 3 17 chr9 117887046 117887180 -24384264 - AluSc SINE Alu -174 135 1 240 235 84 127 chr9 117888007 117888173 -24383271 + MIR SINE MIR 75 233 -29 202 307 26 111 chr9 117888468 117888738 -24382706 + L2 LINE L2 2853 3099 -173 347 348 90 7 chr9 117889336 117889491 -24381953 - MIR SINE MIR -75 187 20 1004 114 0 0 chr9 117889669 117889801 -24381643 + AluSq/x SINE Alu 1 132 -180 2021 106 53 3 chr9 117890320 117890602 -24380842 + AluSx SINE Alu 1 296 -16 445 255 99 7 chr9 117890954 117891095 -24380349 + MLT1H LTR MaLR 6 159 -390 349 285 112 6 chr9 117891128 117891367 -24380077 + MLT1H LTR MaLR 248 546 -3 249 325 36 12 chr9 117891710 117891793 -24379651 - L2 LINE L2 -2 3270 3186 327 278 90 42 chr9 117891849 117891993 -24379451 - MIR3 SINE MIR -9 199 49 436 306 48 48 chr9 117892732 117892961 -24378483 + MIR SINE MIR 22 250 -12 795 248 22 78 chr9 117893107 117893292 -24378152 + MIR SINE MIR 7 174 -88 2223 123 3 0 chr9 117893292 117893593 -24377851 - AluSx SINE Alu -10 302 1 795 248 22 78 chr9 117893593 117893677 -24377767 + MIR SINE MIR 174 261 -1 259 308 164 19 chr9 117894517 117894676 -24376768 - MIR3 SINE MIR -23 185 4 243 354 0 0 chr9 117894835 117894900 -24376544 - L2 LINE L2 -5 3267 3203 337 262 31 112 chr9 117895263 117895445 -24375999 + MIR SINE MIR 37 207 -55 271 264 56 80 chr9 117897309 117897354 -24374090 + L2 LINE L2 3148 3193 -79 2404 84 0 6 chr9 117897354 117897665 -24373779 - AluY SINE Alu -2 309 1 271 264 56 80 chr9 117897665 117897744 -24373700 + L2 LINE L2 3193 3269 -3 232 368 0 0 chr9 117897745 117897840 -24373604 + MIR SINE MIR 57 151 -111 1500 199 42 3 chr9 117898399 117898710 -24372734 + MER33 DNA MER1_type 2 324 0 396 274 72 97 chr9 117899097 117899141 -24372303 + MIR SINE MIR 21 65 -197 246 32 0 0 chr9 117899141 117899172 -24372272 + (TC)n Simple_repeat Simple_repeat 2 32 0 2162 117 3 0 chr9 117899172 117899462 -24371982 - AluSq SINE Alu -22 291 1 396 274 72 97 chr9 117899462 117899653 -24371791 + MIR SINE MIR 63 251 -11 278 280 33 23 chr9 117899757 117899865 -24371579 + MIR3 SINE MIR 65 157 -51 314 235 48 72 chr9 117899925 117900091 -24371353 + MER103 DNA DNA 3 164 -2 191 309 117 0 chr9 117901084 117901178 -24370266 + MIR SINE MIR 49 153 -109 316 278 52 43 chr9 117901380 117901495 -24369949 + MIR SINE MIR 13 128 -134 1932 146 0 35 chr9 117902232 117902547 -24368897 - AluSx SINE Alu -8 304 1 267 37 37 37 chr9 117902959 117903013 -24368431 + (CAAAAA)n Simple_repeat Simple_repeat 1 54 0 433 325 124 5 chr9 117903651 117903860 -24367584 + MIR SINE MIR 29 262 0 415 366 94 7 chr9 117903969 117904245 -24367199 + L3b LINE CR1 1116 1415 -168 313 301 77 96 chr9 117904294 117904479 -24366965 + L3 LINE CR1 1134 1312 -265 501 47 0 0 chr9 117904479 117904543 -24366901 + (TG)n Simple_repeat Simple_repeat 1 64 0 313 301 77 96 chr9 117904543 117904669 -24366775 + L3 LINE CR1 1312 1439 -138 348 322 77 34 chr9 117904686 117904919 -24366525 + MIR SINE MIR 6 248 -14 276 100 0 0 chr9 117905101 117905141 -24366303 + (TATATG)n Simple_repeat Simple_repeat 4 43 0 238 75 0 0 chr9 117905142 117905182 -24366262 - LTR66 LTR ERVL -172 438 399 213 235 0 0 chr9 117905215 117905300 -24366144 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 776 236 40 0 chr9 117905760 117905934 -24365510 - MER3 DNA MER1_type -28 181 1 467 260 54 70 chr9 117906588 117906830 -24364614 + MIR SINE MIR 20 257 -5 216 0 0 0 chr9 117908400 117908424 -24363020 + (T)n Simple_repeat Simple_repeat 1 24 0 237 353 13 33 chr9 117908662 117908815 -24362629 - L2 LINE L2 0 3272 3123 321 279 0 0 chr9 117908937 117909016 -24362428 - MER116 DNA Mariner 0 80 2 352 248 48 76 chr9 117909017 117909162 -24362282 + MIR SINE MIR 78 218 -44 317 246 67 37 chr9 117909794 117909928 -24361516 - MER117 DNA MER1_type -54 143 6 1439 106 20 63 chr9 117910116 117910371 -24361073 + L1MA9 LINE L1 6069 6312 0 214 398 26 9 chr9 117910542 117910655 -24360789 - L2 LINE L2 -4 3268 3154 2225 118 0 3 chr9 117910682 117910979 -24360465 - AluSx SINE Alu -16 296 1 656 276 57 24 chr9 117911439 117911685 -24359759 - MIR SINE MIR -5 257 4 339 306 25 25 chr9 117912221 117912342 -24359102 + L2 LINE L2 3151 3271 -1 335 343 30 0 chr9 117912522 117912621 -24358823 - L2 LINE L2 -1 3271 3170 336 171 61 49 chr9 117913001 117913083 -24358361 + MIR SINE MIR 63 145 -63 211 279 195 30 chr9 117913960 117914144 -24357300 + MIR SINE MIR 37 255 -7 512 294 37 6 chr9 117914283 117914446 -24356998 + MER117 DNA MER1_type 25 192 -5 561 319 81 0 chr9 117914782 117914992 -24356452 - MIR SINE MIR 0 262 36 448 240 33 16 chr9 117915290 117915411 -24356033 + MER103 DNA DNA 38 160 -6 320 319 152 21 chr9 117915631 117915822 -24355622 - MIR SINE MIR -42 220 5 936 202 22 0 chr9 117916651 117916829 -24354615 - MER58A DNA MER1_type -1 223 42 337 282 102 102 chr9 117916929 117917184 -24354260 - MIR SINE MIR -6 256 2 294 237 26 0 chr9 117917763 117917839 -24353605 + MER103 DNA DNA 2 79 -87 262 301 0 0 chr9 117917844 117917927 -24353517 + L2 LINE L2 2723 2805 -509 * 353 262 86 48 chr9 117917902 117918112 -24353332 + L2 LINE L2 2972 3189 -124 1173 172 13 5 chr9 117918116 117918430 -24353014 + MLT1A1 LTR MaLR 1 365 0 282 295 13 0 chr9 117918432 117918510 -24352934 + L2 LINE L2 3188 3266 -47 240 279 44 0 chr9 117918522 117918590 -24352854 + MER103 DNA DNA 95 165 -1 566 281 104 13 chr9 117918708 117918939 -24352505 - MIR SINE MIR 0 262 11 230 384 113 13 chr9 117919576 117919735 -24351709 - L2 LINE L2 -232 3040 2866 1712 66 56 0 chr9 117920345 117920558 -24350886 - AluY SINE Alu -12 299 75 2006 248 87 37 chr9 117920657 117920865 -24350579 + MLT1E LTR MaLR 1 197 -396 2268 103 0 10 chr9 117920865 117921175 -24350269 - AluSq SINE Alu -4 309 3 2006 248 87 37 chr9 117921175 117921530 -24349914 + MLT1E LTR MaLR 197 592 -1 370 296 28 9 chr9 117921665 117921773 -24349671 + MIR SINE MIR 37 146 -62 219 211 0 0 chr9 117922465 117922503 -24348941 - L2 LINE L2 -95 3218 3181 256 360 59 18 chr9 117922746 117922917 -24348527 + MIR SINE MIR 30 214 -48 341 341 72 6 chr9 117924174 117924355 -24347089 + MIR3 SINE MIR 2 192 -70 278 296 65 18 chr9 117924847 117924992 -24346452 + MIR SINE MIR 31 179 -83 472 289 34 0 chr9 117925490 117925639 -24345805 - MIR SINE MIR -12 250 97 386 263 147 13 chr9 117926506 117926662 -24344782 - MIR SINE MIR -67 195 19 230 325 51 32 chr9 117928727 117928884 -24342560 - MIR SINE MIR -32 230 71 283 280 21 21 chr9 117929163 117929256 -24342188 + MIR3 SINE MIR 112 204 -4 321 340 113 14 chr9 117930221 117930362 -24341082 + L2 LINE L2 3117 3271 -1 241 336 93 0 chr9 117930421 117930528 -24340916 - MIR3 SINE MIR -6 202 86 229 284 25 25 chr9 117931427 117931508 -24339936 + MIR SINE MIR 50 130 -78 202 307 91 23 chr9 117932043 117932131 -24339313 + L2 LINE L2 3111 3204 -68 190 313 0 71 chr9 117932331 117932430 -24339014 + MIR SINE MIR 123 214 -48 709 307 22 0 chr9 117933007 117933232 -24338212 - MIR SINE MIR 0 262 33 412 269 47 74 chr9 117933442 117933658 -24337786 + MIR SINE MIR 47 254 -8 264 274 71 12 chr9 117933671 117933755 -24337689 + MIR3 SINE MIR 93 181 -27 285 98 0 0 chr9 117933931 117933972 -24337472 + (CA)n Simple_repeat Simple_repeat 2 42 0 311 282 0 0 chr9 117934491 117934569 -24336875 - MIR SINE MIR -115 147 70 272 290 49 37 chr9 117934670 117934838 -24336606 + MIR SINE MIR 3 171 -60 1865 204 125 22 chr9 117934853 117935309 -24336135 + MLT1D LTR MaLR 3 505 0 2234 107 54 3 chr9 117935374 117935710 -24335734 + L1MA2 LINE L1 5950 6302 -2 196 267 17 17 chr9 117936173 117936233 -24335211 - MIR SINE MIR -56 152 93 362 188 0 0 chr9 117937070 117937139 -24334305 + MER116 DNA Mariner 12 80 0 616 255 106 5 chr9 117937643 117937836 -24333608 - MIR SINE MIR -14 248 39 2699 81 10 65 chr9 117937882 117938084 -24333360 - THE1B LTR MaLR 0 364 191 2259 113 0 0 chr9 117938084 117938385 -24333059 - AluY SINE Alu -10 301 1 2699 81 10 65 chr9 117938385 117938567 -24332877 - THE1B LTR MaLR -173 191 1 224 167 21 0 chr9 117938595 117938643 -24332801 + GA-rich Low_complexity Low_complexity 4 52 0 264 268 12 37 chr9 117938725 117938807 -24332637 - L2 LINE L2 -43 3270 3191 895 235 36 0 chr9 117938809 117939005 -24332439 + MER20 DNA MER1_type 1 203 -16 296 229 0 0 chr9 117940021 117940082 -24331362 + L2 LINE L2 3249 3309 -4 1318 84 0 0 chr9 117940450 117940617 -24330827 + AluY SINE Alu 142 308 -3 259 306 35 0 chr9 117940834 117940919 -24330525 - L2 LINE L2 -4 3309 3222 406 311 54 6 chr9 117941032 117941199 -24330245 - MIR SINE MIR -71 191 17 625 266 82 5 chr9 117941589 117941804 -24329640 + MIR SINE MIR 33 261 -1 1218 131 18 54 chr9 117942000 117942222 -24329222 + MER20 DNA MER1_type 6 219 0 2023 171 48 8 chr9 117942778 117943129 -24328315 - MLT1A1 LTR MaLR 0 365 1 365 311 79 13 chr9 117943155 117943383 -24328061 - MIR SINE MIR -13 249 7 261 364 139 23 chr9 117943644 117943990 -24327454 - L2 LINE L2 -40 3232 2847 274 315 49 14 chr9 117944873 117944995 -24326449 - MIR SINE MIR -9 253 124 822 183 8 0 chr9 117944995 117945126 -24326318 + FLAM_A SINE Alu 2 133 0 274 315 49 14 chr9 117945126 117945146 -24326298 - MIR SINE MIR -138 124 106 471 35 0 0 chr9 117945702 117945759 -24325685 + (TG)n Simple_repeat Simple_repeat 2 58 0 596 346 68 30 chr9 117946230 117947010 -24324434 - L2 LINE L2 0 3272 2467 408 325 69 0 chr9 117947327 117947487 -24323957 + MIR SINE MIR 6 176 -86 2286 152 43 0 chr9 117947832 117948180 -24323264 + MLT1A1 LTR MaLR 3 365 0 335 315 131 74 chr9 117948197 117948632 -24322812 + L2 LINE L2 2809 3268 -4 3134 219 66 19 chr9 117949222 117950180 -24321264 - Charlie2 DNA MER1_type -18 2844 1842 702 259 235 8 chr9 117950178 117950433 -24321011 - Charlie2 DNA MER1_type -2548 314 2 * 234 226 38 0 chr9 117950648 117950701 -24320743 - MIR3 SINE MIR 0 208 154 372 355 26 0 chr9 117950704 117950893 -24320551 + MER117 DNA MER1_type 3 196 -1 736 298 23 27 chr9 117951664 117951926 -24319518 - L1MC/D LINE L1 -2070 5738 5478 379 315 37 0 chr9 117952711 117952819 -24318625 + L2 LINE L2 3202 3313 0 361 303 90 0 chr9 117952865 117952987 -24318457 - MIR SINE MIR -73 189 57 705 153 21 25 chr9 117953433 117953677 -24317767 + CT-rich Low_complexity Low_complexity 1 243 0 239 56 83 0 chr9 117953781 117953817 -24317627 + CT-rich Low_complexity Low_complexity 2 40 0 624 162 16 43 chr9 117953823 117954008 -24317436 + C-rich Low_complexity Low_complexity 1 180 0 289 223 21 11 chr9 117954034 117954128 -24317316 + CT-rich Low_complexity Low_complexity 2 96 0 281 355 41 33 chr9 117955034 117955155 -24316289 - L2 LINE L2 0 3313 3192 756 135 0 0 chr9 117955175 117955286 -24316158 - Tigger5 DNA MER2_type 0 2323 2213 406 216 47 94 chr9 117955287 117955458 -24315986 - MIR SINE MIR -37 225 63 256 297 119 17 chr9 117956718 117956836 -24314608 - MIR SINE MIR -109 153 24 494 292 105 18 chr9 117956916 117957087 -24314357 - MIR3 SINE MIR -5 203 18 252 325 39 118 chr9 117957292 117957495 -24313949 - L2 LINE L2 -49 3223 3037 645 326 120 21 chr9 117957533 117957916 -24313528 - L2 LINE L2 -1 3312 2892 1010 117 43 0 chr9 117957920 117958117 -24313327 + AluYb8 SINE Alu 150 353 0 231 357 75 41 chr9 117958874 117959168 -24312276 + L2 LINE L2 1791 2094 -1220 318 115 0 0 chr9 117959783 117959835 -24311609 + (TA)n Simple_repeat Simple_repeat 2 53 0 954 196 22 0 chr9 117960665 117960844 -24310600 + MER5A DNA MER1_type 6 188 -1 307 254 225 14 chr9 117961239 117961377 -24310067 - MIR3 SINE MIR -18 190 24 764 313 36 8 chr9 117962045 117962294 -24309150 - MIR SINE MIR -6 256 1 2331 97 6 10 chr9 117962345 117962656 -24308788 - AluSg SINE Alu 0 310 1 185 212 0 0 chr9 117963266 117963299 -24308145 - MIR SINE MIR -209 53 21 315 240 50 40 chr9 117963424 117963524 -24307920 - MLT1L LTR MaLR -1 614 514 1077 261 75 24 chr9 117964184 117964518 -24306926 - MLT1I LTR MaLR -4 405 55 310 271 63 62 chr9 117965378 117965393 -24306051 + MIR SINE MIR 23 36 -212 2235 123 0 0 chr9 117965393 117965695 -24305749 + AluSg SINE Alu 1 302 -8 310 271 63 62 chr9 117965695 117965849 -24305595 + MIR SINE MIR 36 192 -56 300 278 165 0 chr9 117966139 117966272 -24305172 + L2 LINE L2 2599 2753 -561 260 307 89 111 chr9 117966470 117966740 -24304704 + L2 LINE L2 2923 3186 -86 207 227 152 15 chr9 117966829 117966895 -24304549 + L2 LINE L2 3239 3313 0 1655 190 7 3 chr9 117967130 117967435 -24304009 - AluJo SINE Alu -6 306 1 186 271 0 0 chr9 117967536 117967584 -24303860 + MIR SINE MIR 107 154 -108 1238 119 0 11 chr9 117967855 117968031 -24303413 - AluSg/x SINE Alu -5 305 132 2314 98 0 10 chr9 117968031 117968337 -24303107 - AluSx SINE Alu -9 303 1 414 312 75 27 chr9 117969120 117969306 -24302138 + MIR SINE MIR 50 244 -18 396 324 62 29 chr9 117969333 117969557 -24301887 - MIR SINE MIR -6 256 16 215 317 69 20 chr9 117969635 117969736 -24301708 - L2 LINE L2 0 3272 3167 266 305 97 84 chr9 117969759 117969886 -24301558 + L2 LINE L2 3034 3167 -105 2152 129 0 0 chr9 117969886 117970173 -24301271 - AluSx SINE Alu -25 287 1 266 305 97 84 chr9 117970173 117970271 -24301173 + L2 LINE L2 3167 3262 -10 1724 187 32 40 chr9 117970580 117970954 -24300490 + MLT1A2 LTR MaLR 4 374 0 189 0 0 0 chr9 117971558 117971579 -24299865 + (TA)n Simple_repeat Simple_repeat 2 22 0 876 152 41 0 chr9 117971579 117971724 -24299720 - AluSg/x SINE Alu -25 285 135 581 299 108 50 chr9 117972372 117972537 -24298907 - L2 LINE L2 -3 3310 3156 1914 137 78 28 chr9 117972537 117972894 -24298550 + THE1C LTR MaLR 1 375 0 581 299 108 50 chr9 117972894 117973419 -24298025 - L2 LINE L2 -157 3156 2584 2443 68 7 7 chr9 117973444 117973753 -24297691 + AluY SINE Alu 1 309 -2 570 240 89 49 chr9 117974716 117974962 -24296482 + MER112 DNA MER1_type 1 256 -4 501 214 166 14 chr9 117975042 117975187 -24296257 - MLT1I LTR MaLR 0 409 243 849 210 49 6 chr9 117975294 117975456 -24295988 + MER45A DNA AcHobo 1 169 -9 274 263 50 0 chr9 117975472 117975552 -24295892 + MIR SINE MIR 108 191 -71 222 340 31 10 chr9 117975678 117975775 -24295669 + L2 LINE L2 2967 3065 -207 212 317 95 52 chr9 117975871 117976241 -24295203 + L2 LINE L2 2593 2977 -336 2164 124 0 0 chr9 117976243 117976542 -24294902 + AluSx SINE Alu 6 304 -8 860 287 39 32 chr9 117977140 117977239 -24294205 - MLT1I LTR MaLR -30 379 282 1708 171 17 13 chr9 117977239 117977537 -24293907 - AluJb SINE Alu -10 302 4 860 287 39 32 chr9 117977537 117977719 -24293725 - MLT1I LTR MaLR -127 282 96 1330 198 204 0 chr9 117979466 117979521 -24291923 - MLT1D LTR MaLR 0 505 463 228 86 0 0 chr9 117979521 117979556 -24291888 + (CA)n Simple_repeat Simple_repeat 2 36 0 1330 198 204 0 chr9 117979556 117979659 -24291785 - MLT1D LTR MaLR -42 463 382 234 62 0 0 chr9 117979659 117979691 -24291753 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1330 198 204 0 chr9 117979691 117979884 -24291560 - MLT1D LTR MaLR -123 382 81 243 0 0 0 chr9 117979884 117979911 -24291533 + (T)n Simple_repeat Simple_repeat 1 27 0 238 321 160 0 chr9 117980032 117980138 -24291306 - MIR SINE MIR -17 245 123 258 350 24 32 chr9 117980627 117980750 -24290694 + MIR SINE MIR 20 141 -67 451 267 133 0 chr9 117980898 117981033 -24290411 + MIR SINE MIR 2 154 -108 494 257 22 61 chr9 117981158 117981367 -24290077 + MIR SINE MIR 42 241 -21 326 343 94 6 chr9 117982096 117982277 -24289167 - MIR SINE MIR -17 245 49 623 302 150 8 chr9 117983180 117983554 -24287890 - L1ME3A LINE L1 -294 5876 5450 299 299 38 72 chr9 117983652 117984180 -24287264 - L1ME3A LINE L1 -754 5392 4883 2908 85 95 5 chr9 117984215 117984626 -24286818 - LTR7 LTR ERV1 -2 448 1 2388 119 45 33 chr9 117984626 117985217 -24286227 - HERVH LTR ERV1 0 7713 5600 3919 160 1 1 chr9 117985218 117985880 -24285564 - HERVH LTR ERV1 -2564 5149 4488 1859 122 9 6 chr9 117985882 117986201 -24285243 - HERVH LTR ERV1 -3720 3993 3674 12379 88 37 25 chr9 117986305 117988257 -24283187 - HERVH LTR ERV1 -5738 1975 1 2374 102 99 5 chr9 117988265 117988669 -24282775 - LTR7 LTR ERV1 -8 442 1 461 304 138 28 chr9 117988678 117989105 -24282339 - L1ME3A LINE L1 -1310 4836 4363 277 328 57 0 chr9 117989168 117989408 -24282036 - L1ME3A LINE L1 -1854 4292 4038 462 283 64 86 chr9 117989418 117989605 -24281839 + MIR SINE MIR 6 188 -74 261 210 0 0 chr9 117989606 117989668 -24281776 + (TA)n Simple_repeat Simple_repeat 2 63 0 238 239 0 0 chr9 117989672 117989718 -24281726 + MIR SINE MIR 207 252 -10 303 316 0 7 chr9 117989734 117989886 -24281558 - L1ME3A LINE L1 -2113 4033 3883 3830 138 21 0 chr9 117990519 117991141 -24280303 + MER41B LTR ERV1 1 635 0 22 56 0 0 chr9 117991219 117991255 -24280189 + AT_rich Low_complexity Low_complexity 1 36 0 2505 135 45 15 chr9 117991271 117991792 -24279652 - MER4B LTR ERV1 0 779 78 2172 145 4 67 chr9 117991892 117992353 -24279091 + MER4B LTR ERV1 174 605 -5 1898 243 100 50 chr9 117992928 117993694 -24277750 - L1ME3A LINE L1 -14 6156 5306 1756 169 110 3 chr9 117993694 117994031 -24277413 - MER83C LTR ERV1 0 373 1 1898 243 100 50 chr9 117994031 117994472 -24276972 - L1ME3A LINE L1 -864 5306 4889 319 64 0 0 chr9 117994636 117994683 -24276761 - MADE1 DNA Mariner -33 47 1 1211 70 45 30 chr9 117994683 117994858 -24276586 - L1MA4 LINE L1 -341 5959 5779 324 0 0 0 chr9 117994858 117994894 -24276550 + (TA)n Simple_repeat Simple_repeat 2 37 0 1211 70 45 30 chr9 117994894 117994918 -24276526 - L1MA4 LINE L1 -521 5779 5757 1736 120 14 7 chr9 117994941 117995225 -24276219 - L1MA1 LINE L1 0 6302 6017 1911 153 7 10 chr9 117995242 117995549 -24275895 - AluSq SINE Alu -7 306 1 235 277 12 12 chr9 117996230 117996313 -24275131 + HsTC2 DNA Tc2 47 129 -1769 2181 107 0 35 chr9 117996342 117996659 -24274785 - AluSg SINE Alu -4 306 1 1379 209 123 6 chr9 117996832 117997200 -24274244 + MSTD LTR MaLR 1 396 0 1944 162 0 10 chr9 117997252 117997566 -24273878 - AluSx SINE Alu -1 311 1 4224 115 28 17 chr9 117997582 117998433 -24273011 - L1MA4 LINE L1 -317 5983 5121 4815 169 28 25 chr9 117998433 117999536 -24271908 + L1MA4 LINE L1 4014 5119 -1027 203 181 0 86 chr9 117999629 117999734 -24271710 + T-rich Low_complexity Low_complexity 5 100 0 181 415 100 31 chr9 118000586 118000967 -24270477 + L2 LINE L2 2866 3272 0 26 30 0 0 chr9 118001686 118001719 -24269725 + AT_rich Low_complexity Low_complexity 1 33 0 229 262 43 128 chr9 118002096 118002260 -24269184 + MIR3 SINE MIR 8 157 -51 405 340 4 30 chr9 118002349 118002581 -24268863 - Charlie8 DNA MER1_type -2188 229 4 358 252 44 68 chr9 118002938 118002975 -24268469 + MER113 DNA MER1_type? 1 37 -484 2292 198 103 6 chr9 118002975 118003469 -24267975 + MLT1F LTR MaLR 1 542 0 358 252 44 68 chr9 118003469 118003637 -24267807 + MER113 DNA MER1_type? 37 201 -320 25 31 0 0 chr9 118003667 118003699 -24267745 + AT_rich Low_complexity Low_complexity 1 32 0 3079 183 9 52 chr9 118003699 118004453 -24266991 - L1MA9 LINE L1 -38 6274 5553 326 215 17 14 chr9 118004464 118004647 -24266797 + MER113 DNA MER1_type? 239 470 -51 340 326 44 30 chr9 118004943 118005078 -24266366 - MIR3 SINE MIR -61 147 11 300 70 0 0 chr9 118005399 118005442 -24266002 + (CA)n Simple_repeat Simple_repeat 1 43 0 218 228 0 35 chr9 118007545 118007602 -24263842 - MIR SINE MIR -128 134 80 1238 136 0 0 chr9 118007602 118007779 -24263665 + AluSq SINE Alu 135 311 -2 571 37 24 0 chr9 118007879 118007961 -24263483 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 302 306 240 8 chr9 118007963 118008205 -24263239 - L2 LINE L2 -32 3281 2984 188 35 35 0 chr9 118008310 118008339 -24263105 + (TG)n Simple_repeat Simple_repeat 2 31 0 239 348 35 104 chr9 118009198 118009572 -24261872 - L2 LINE L2 -58 3214 2867 260 203 0 51 chr9 118010121 118010180 -24261264 + L2 LINE L2 3201 3256 -16 365 367 34 0 chr9 118010318 118010525 -24260919 - MIR SINE MIR -2 260 47 221 282 26 13 chr9 118010561 118010639 -24260805 + L3 LINE CR1 1242 1320 -257 274 310 70 39 chr9 118010971 118011100 -24260344 - MIR SINE MIR -74 134 1 227 254 68 85 chr9 118011788 118011906 -24259538 - MIR3 SINE MIR -21 187 72 379 256 159 31 chr9 118012103 118012298 -24259146 - MIR SINE MIR -12 250 31 212 250 19 0 chr9 118012373 118012425 -24259019 - L2 LINE L2 0 3313 3261 219 283 50 30 chr9 118012797 118012896 -24258548 - L2 LINE L2 -498 2816 2716 700 329 93 18 chr9 118012900 118013353 -24258091 - MLT1J LTR MaLR -1 510 24 542 260 32 112 chr9 118014411 118014688 -24256756 + MIR SINE MIR 5 259 -3 1381 195 254 7 chr9 118014817 118015222 -24256222 - MLT1D LTR MaLR 0 505 1 199 309 18 0 chr9 118015933 118015988 -24255456 + MIR SINE MIR 91 146 -62 381 327 92 23 chr9 118017134 118017351 -24254093 - MIR SINE MIR -3 259 28 314 263 85 52 chr9 118017480 118017665 -24253779 - MIR SINE MIR -11 251 63 791 247 25 42 chr9 118017682 118017921 -24253523 - MIR SINE MIR -20 242 8 383 296 73 41 chr9 118018915 118019135 -24252309 - MIR SINE MIR -32 230 4 310 290 74 80 chr9 118019449 118019472 -24251972 - L2 LINE L2 -1 3271 3249 1539 222 135 22 chr9 118019472 118019503 -24251941 + MLT1H LTR MaLR 3 29 -520 279 0 0 0 chr9 118019503 118019534 -24251910 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1539 222 135 22 chr9 118019534 118019992 -24251452 + MLT1H LTR MaLR 29 547 -2 310 290 74 80 chr9 118019992 118020130 -24251314 - L2 LINE L2 -23 3249 3111 349 329 68 0 chr9 118020608 118020754 -24250690 + MIR SINE MIR 35 190 -72 1020 310 54 28 chr9 118021551 118021938 -24249506 + L2 LINE L2 2917 3313 0 444 262 48 28 chr9 118022741 118022886 -24248558 - MIR SINE MIR -78 184 37 406 366 72 24 chr9 118023275 118023652 -24247792 + L2 LINE L2 2483 2877 -437 2182 126 0 10 chr9 118023693 118023994 -24247450 - AluSx SINE Alu -6 306 9 269 215 96 105 chr9 118024004 118024213 -24247231 + MLT1K LTR MaLR 364 570 -18 243 308 48 110 chr9 118024231 118024523 -24246921 - L2 LINE L2 -109 3163 2890 2275 120 31 14 chr9 118024874 118025231 -24246213 + THE1B LTR MaLR 1 363 -1 355 256 80 36 chr9 118026108 118026245 -24245199 - L2 LINE L2 -2 3270 3128 1974 104 100 4 chr9 118026511 118026790 -24244654 + AluSg SINE Alu 1 306 -4 22 35 0 0 chr9 118026823 118026852 -24244592 + AT_rich Low_complexity Low_complexity 1 29 0 2179 127 3 9 chr9 118029419 118029734 -24241710 + AluSq SINE Alu 1 313 0 282 276 163 30 chr9 118030092 118030295 -24241149 + MER102b DNA MER1_type 110 339 -2 993 184 13 57 chr9 118030956 118031184 -24240260 - MER20 DNA MER1_type -1 218 1 204 339 0 0 chr9 118031695 118031760 -24239684 + GA-rich Low_complexity Low_complexity 1 65 0 303 246 239 30 chr9 118032498 118032632 -24238812 - MLT1H LTR MaLR -383 166 5 303 307 170 43 chr9 118032636 118032965 -24238479 + L1MC4a LINE L1 5579 5949 -1859 943 225 5 14 chr9 118033057 118033270 -24238174 + MER20 DNA MER1_type 3 213 -6 311 264 264 39 chr9 118033296 118033576 -24237868 + L2 LINE L2 2266 2608 -706 288 263 168 52 chr9 118034038 118034195 -24237249 + MIR SINE MIR 7 183 -63 688 357 105 17 chr9 118034453 118035103 -24236341 + L2 LINE L2 88 885 -2429 419 330 38 9 chr9 118035127 118035339 -24236105 + L2 LINE L2 1170 1387 -1927 353 342 13 13 chr9 118035333 118035485 -24235959 + L2 LINE L2 1901 2052 -1262 * 2026 159 37 31 chr9 118035489 118036038 -24235406 - MLT2A2 LTR ERVL -2 552 1 1272 312 111 39 chr9 118036062 118037232 -24234212 + L2 LINE L2 2067 3313 0 635 267 0 0 chr9 118037413 118037574 -24233870 - L1MB7 LINE L1 -16 6168 6008 3747 83 0 6 chr9 118037574 118038077 -24233367 - LTR3b LTR ERVK 0 500 1 1078 167 13 34 chr9 118038077 118038310 -24233134 - L1MB7 LINE L1 -161 6013 5786 574 119 18 18 chr9 118038306 118038415 -24233029 + L1MB7 LINE L1 5660 5768 -416 * 230 253 330 0 chr9 118038427 118038518 -24232926 + L2 LINE L2 3152 3272 0 210 219 0 31 chr9 118038539 118038603 -24232841 + (TAA)n Simple_repeat Simple_repeat 3 64 0 188 367 78 0 chr9 118039042 118039132 -24232312 + L2 LINE L2 3175 3271 -1 234 234 0 65 chr9 118039581 118039658 -24231786 + MIR3 SINE MIR 130 201 -7 246 284 0 0 chr9 118040147 118040228 -24231216 + CT-rich Low_complexity Low_complexity 3 83 0 * 706 196 0 17 chr9 118040208 118040387 -24231057 + C-rich Low_complexity Low_complexity 3 178 0 303 207 15 30 chr9 118040357 118040492 -24230952 + CT-rich Low_complexity Low_complexity 3 135 0 * 679 350 83 18 chr9 118040552 118041146 -24230298 + L2 LINE L2 2678 3313 0 350 352 16 16 chr9 118041187 118041315 -24230129 + L2 LINE L2 2968 3095 -177 206 263 0 62 chr9 118041351 118041431 -24230013 + MIR3 SINE MIR 131 205 -3 258 197 70 84 chr9 118041444 118041515 -24229929 + MIR SINE MIR 42 111 -97 235 311 226 5 chr9 118041819 118042018 -24229426 - MIR SINE MIR -12 250 9 302 349 18 9 chr9 118042840 118042949 -24228495 + MIR SINE MIR 21 130 -78 828 193 5 83 chr9 118043019 118043211 -24228233 - AluJo SINE Alu -14 298 122 271 295 19 19 chr9 118043774 118043879 -24227565 + L2 LINE L2 1798 1902 -1412 193 257 108 27 chr9 118044029 118044103 -24227341 + L2 LINE L2 2916 2995 -277 180 77 0 0 chr9 118044574 118044600 -24226844 + (CAA)n Simple_repeat Simple_repeat 2 27 0 323 257 142 78 chr9 118045032 118045771 -24225673 - LTR33A LTR ERVL -9 514 1 332 212 189 8 chr9 118046561 118046693 -24224751 + MIR SINE MIR 101 256 -6 222 37 0 0 chr9 118047138 118047165 -24224279 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 217 344 152 23 chr9 118047711 118048278 -24223166 - L2 LINE L2 -350 2964 2325 223 240 39 11 chr9 118048326 118048408 -24223036 + MIR SINE MIR 87 134 -74 200 279 39 58 chr9 118049145 118049249 -24222195 + L2 LINE L2 441 542 -2772 229 282 13 51 chr9 118049302 118049380 -24222064 + L2 LINE L2 3194 3268 -4 2070 125 0 13 chr9 118049395 118049708 -24221736 + AluSg SINE Alu 2 310 0 588 299 50 5 chr9 118049949 118050150 -24221294 + MIR SINE MIR 53 262 0 200 268 134 12 chr9 118050353 118050435 -24221009 + MIR SINE MIR 165 256 -6 427 257 29 0 chr9 118050435 118050540 -24220904 - MLT1K LTR MaLR -2 586 479 315 132 0 0 chr9 118050738 118050806 -24220638 + (TA)n Simple_repeat Simple_repeat 2 69 0 781 225 62 8 chr9 118051195 118051402 -24220042 - MER20 DNA MER1_type -7 212 1 373 307 74 11 chr9 118051585 118051761 -24219683 + MIR3 SINE MIR 12 198 -10 2474 105 19 11 chr9 118051937 118052309 -24219135 - THE1C LTR MaLR 0 375 1 270 252 71 71 chr9 118052685 118052812 -24218632 - MIR SINE MIR -76 132 20 626 245 203 47 chr9 118053130 118053534 -24217910 - MLT1C LTR MaLR 0 467 1 1607 146 4 0 chr9 118053656 118053896 -24217548 - AluSg/x SINE Alu -5 305 65 226 366 41 16 chr9 118054005 118054128 -24217316 + MIR3 SINE MIR 42 167 -41 201 263 0 18 chr9 118054726 118054783 -24216661 + T-rich Low_complexity Low_complexity 3 58 0 244 284 79 24 chr9 118054793 118054920 -24216524 - L2 LINE L2 -1 3271 3138 212 196 22 0 chr9 118054931 118054977 -24216467 + (CATAT)n Simple_repeat Simple_repeat 4 50 0 2725 99 12 15 chr9 118056121 118056526 -24214918 + MLT2A2 LTR ERVL 1 404 -49 257 93 41 52 chr9 118056528 118056625 -24214819 + (TA)n Simple_repeat Simple_repeat 2 97 0 349 74 19 0 chr9 118056695 118056749 -24214695 + MLT2A2 LTR ERVL 399 453 0 3449 157 30 82 chr9 118056761 118058005 -24213439 - L1MB1 LINE L1 -5 6163 4981 349 363 90 36 chr9 118058081 118058414 -24213030 + L2 LINE L2 2899 3249 -23 518 85 43 0 chr9 118058418 118058512 -24212932 + GA-rich Low_complexity Low_complexity 4 101 0 890 160 2 11 chr9 118058604 118058769 -24212675 + MLT1A1 LTR MaLR 1 141 -224 224 119 0 24 chr9 118059271 118059313 -24212131 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 184 398 45 23 chr9 118060466 118060554 -24210890 + L2 LINE L2 3168 3257 -15 2081 176 3 6 chr9 118061227 118061585 -24209859 + MLT1A1 LTR MaLR 1 357 -8 524 223 46 15 chr9 118061603 118061733 -24209711 - MLT1E LTR MaLR 0 654 521 605 288 7 0 chr9 118061854 118062000 -24209444 - MLT1E LTR MaLR -142 451 305 1398 224 24 18 chr9 118062726 118063065 -24208379 - MER58B DNA MER1_type 0 341 1 1940 218 113 29 chr9 118063739 118064403 -24207041 - L1MC4 LINE L1 0 8042 7323 834 241 49 45 chr9 118064471 118064713 -24206731 - L1MC4 LINE L1 -919 7123 6878 2439 111 80 5 chr9 118064713 118065111 -24206333 - MSTA LTR MaLR 0 428 1 834 241 49 45 chr9 118065111 118065154 -24206290 - L1MC4 LINE L1 -1164 6878 6837 209 170 0 111 chr9 118065175 118065310 -24206134 + T-rich Low_complexity Low_complexity 5 124 0 252 319 50 21 chr9 118065320 118065461 -24205983 - L1MC4 LINE L1 -1233 6809 6665 248 173 19 0 chr9 118065472 118065524 -24205920 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 477 215 0 0 chr9 118065525 118065674 -24205770 + (CA)n Simple_repeat Simple_repeat 1 149 0 272 230 14 0 chr9 118065747 118065821 -24205623 + MLT1L LTR MaLR 539 613 -2 22 0 0 0 chr9 118065898 118065920 -24205524 + AT_rich Low_complexity Low_complexity 1 22 0 345 277 64 58 chr9 118066865 118067053 -24204391 + L1M4 LINE L1 4142 4330 -1816 358 311 88 20 chr9 118067267 118067307 -24204137 - MIR SINE MIR -76 186 150 1860 199 7 44 chr9 118067307 118067718 -24203726 + MSTD LTR MaLR 1 396 0 358 311 88 20 chr9 118067718 118067825 -24203619 - MIR SINE MIR -112 150 29 1984 130 0 57 chr9 118068079 118068395 -24203049 + AluSx SINE Alu 3 300 -12 1736 212 36 13 chr9 118069005 118069392 -24202052 - MSTD LTR MaLR 0 396 1 2631 101 11 13 chr9 118069448 118069824 -24201620 - THE1C LTR MaLR 0 375 1 245 359 84 42 chr9 118069993 118070302 -24201142 + L2 LINE L2 2939 3260 -12 251 349 60 87 chr9 118071479 118071697 -24199747 - L2 LINE L2 -19 3253 3042 402 333 56 32 chr9 118071730 118071979 -24199465 + MIR SINE MIR 2 256 -6 230 274 27 0 chr9 118072948 118073021 -24198423 - MIR SINE MIR -16 246 172 916 267 48 44 chr9 118073088 118073523 -24197921 - MLT1J LTR MaLR -45 466 30 300 290 41 62 chr9 118073543 118073688 -24197756 - MIR SINE MIR -109 153 12 239 306 18 54 chr9 118073769 118073880 -24197564 + MER81 DNA DNA 1 107 -7 198 0 0 0 chr9 118073907 118073929 -24197515 + (A)n Simple_repeat Simple_repeat 1 22 0 405 0 0 0 chr9 118074421 118074466 -24196978 + (TC)n Simple_repeat Simple_repeat 2 46 0 276 30 0 0 chr9 118074465 118074498 -24196946 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 190 385 72 6 chr9 118074625 118074791 -24196653 - L2 LINE L2 -548 2766 2590 254 197 76 15 chr9 118074859 118074925 -24196519 - LTR16C LTR ERVL -2 489 420 1374 130 68 14 chr9 118075908 118076115 -24195329 - AluJb SINE Alu -9 303 86 474 293 19 34 chr9 118076935 118077143 -24194301 + MIR SINE MIR 48 252 -10 470 347 97 5 chr9 118077316 118077532 -24193912 - MIR SINE MIR 0 262 27 5588 137 7 7 chr9 118077608 118078728 -24192716 - L1MA3 LINE L1 -101 7623 6503 5844 186 16 12 chr9 118078730 118080022 -24191422 - L1MA3 LINE L1 -1786 5779 4484 2343 93 0 0 chr9 118080034 118080334 -24191110 + AluSx SINE Alu 11 310 -2 213 250 0 0 chr9 118080445 118080505 -24190939 + (TA)n Simple_repeat Simple_repeat 1 60 0 1893 131 3 18 chr9 118080791 118081074 -24190370 - AluSg SINE Alu -31 279 1 5023 171 10 26 chr9 118081078 118081505 -24189939 - L1MA3 LINE L1 -3114 4451 4018 2310 66 3 26 chr9 118081505 118081809 -24189635 - AluY SINE Alu -14 297 1 5023 171 10 26 chr9 118081809 118082829 -24188615 - L1MA3 LINE L1 -3547 4018 3035 2273 102 0 20 chr9 118082829 118083132 -24188312 + AluSg SINE Alu 1 297 -13 5023 171 10 26 chr9 118083132 118083396 -24188048 - L1MA3 LINE L1 -4530 3035 2768 308 203 16 0 chr9 118083499 118083563 -24187881 - L1MA3 LINE L1 -6123 1442 1378 8406 160 12 14 chr9 118083563 118085042 -24186402 - L1MA3 LINE L1 -6079 1486 10 262 281 101 101 chr9 118085260 118085338 -24186106 + MIR SINE MIR 28 105 -157 1857 179 10 0 chr9 118085338 118085645 -24185799 - AluJb SINE Alu -2 310 1 262 281 101 101 chr9 118085645 118085765 -24185679 + MIR SINE MIR 104 226 -36 292 358 34 36 chr9 118086455 118086694 -24184750 + MIR SINE MIR 17 255 -7 304 314 40 32 chr9 118086711 118086835 -24184609 - L2 LINE L2 0 3272 3148 275 290 110 35 chr9 118088437 118088582 -24182862 + MIR SINE MIR 63 218 -44 24 77 0 0 chr9 118088582 118088634 -24182810 + AT_rich Low_complexity Low_complexity 1 52 0 216 0 0 0 chr9 118089096 118089120 -24182324 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1775 158 49 30 chr9 118089774 118090142 -24181302 - THE1C LTR MaLR 0 375 1 266 358 78 73 chr9 118090814 118091227 -24180217 - L2 LINE L2 -34 3238 2824 1978 106 7 4 chr9 118091504 118091806 -24179638 + AluSx SINE Alu 11 313 0 312 338 28 72 chr9 118091994 118092323 -24179121 - L2 LINE L2 -214 3058 2742 1714 186 3 13 chr9 118092713 118093020 -24178424 - AluJb SINE Alu -6 306 3 285 29 0 0 chr9 118093241 118093275 -24178169 + (TG)n Simple_repeat Simple_repeat 1 34 0 209 197 15 0 chr9 118093322 118093388 -24178056 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 21 0 0 0 chr9 118093496 118093517 -24177927 + AT_rich Low_complexity Low_complexity 1 21 0 218 258 16 0 chr9 118094177 118094239 -24177205 + MIR SINE MIR 173 235 -27 793 240 39 0 chr9 118094483 118094662 -24176782 + MIR SINE MIR 45 230 -32 1965 148 0 27 chr9 118095214 118095511 -24175933 - AluSx SINE Alu -23 289 1 1554 206 47 14 chr9 118095520 118095879 -24175565 + MLT1A2 LTR MaLR 4 374 0 2299 66 0 20 chr9 118096312 118096614 -24174830 + AluY SINE Alu 2 297 -14 180 345 11 46 chr9 118096988 118097075 -24174369 - L2 LINE L2 -2 3270 3187 368 276 158 0 chr9 118097089 118097216 -24174228 - MIR3 SINE MIR -28 180 34 441 0 0 0 chr9 118097906 118097955 -24173489 + (CA)n Simple_repeat Simple_repeat 2 50 0 252 0 0 0 chr9 118097955 118097983 -24173461 + (A)n Simple_repeat Simple_repeat 1 28 0 428 274 131 25 chr9 118098274 118098511 -24172933 + MLT1J2 LTR MaLR 70 331 -119 276 167 0 0 chr9 118098952 118099000 -24172444 + MLT1L LTR MaLR 170 217 -398 205 330 87 17 chr9 118099635 118099750 -24171694 + MIR SINE MIR 1 123 -139 619 287 40 0 chr9 118102074 118102248 -24169196 + MIR SINE MIR 1 181 -81 1776 175 13 30 chr9 118102275 118102578 -24168866 + AluJb SINE Alu 3 300 -12 231 263 105 23 chr9 118102601 118102734 -24168710 - MIR SINE MIR -27 235 92 220 325 44 18 chr9 118103887 118104001 -24167443 + MIR3 SINE MIR 82 198 -10 629 271 86 19 chr9 118105029 118105239 -24166205 - MER58A DNA MER1_type 0 224 1 365 303 46 17 chr9 118105240 118105415 -24166029 - L1ME LINE L1 -466 5655 5476 915 108 0 2 chr9 118105420 118105681 -24165763 + AluSx SINE Alu 1 309 0 374 310 90 0 chr9 118106317 118106472 -24164972 + MIR SINE MIR 21 189 -73 634 316 72 29 chr9 118107166 118107552 -24163892 - L2 LINE L2 -559 2755 2353 260 288 59 42 chr9 118107554 118107672 -24163772 + MIR SINE MIR 16 135 -73 399 283 19 9 chr9 118107717 118107823 -24163621 - MER5B DNA MER1_type -60 118 12 319 312 43 21 chr9 118108666 118108807 -24162637 + L3b LINE CR1 1154 1297 -286 301 335 120 25 chr9 118108949 118109107 -24162337 + MIR SINE MIR 20 192 -70 210 191 0 0 chr9 118109397 118109439 -24162005 + (TG)n Simple_repeat Simple_repeat 2 43 0 944 295 85 27 chr9 118109920 118110486 -24160958 - L1ME3A LINE L1 -278 5892 5300 1352 297 153 42 chr9 118110563 118111932 -24159512 - L1ME3A LINE L1 -913 5233 3729 273 57 0 0 chr9 118112110 118112145 -24159299 + MADE1 DNA Mariner 1 35 -45 24 0 0 0 chr9 118112502 118112526 -24158918 + AT_rich Low_complexity Low_complexity 1 24 0 454 346 51 17 chr9 118112529 118112766 -24158678 - MIR SINE MIR -17 245 1 199 267 131 102 chr9 118114001 118114177 -24157267 + MIR SINE MIR 21 201 -61 2335 125 22 11 chr9 118114177 118114537 -24156907 - THE1B LTR MaLR 0 364 1 445 305 58 31 chr9 118115241 118115464 -24155980 - MIR SINE MIR -11 251 23 201 147 0 0 chr9 118116100 118116134 -24155310 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 9689 30 7 4 chr9 118116381 118118336 -24153108 - L1PA2 LINE L1 0 6155 4202 321 369 83 5 chr9 118118610 118118827 -24152617 - MIR SINE MIR -11 251 18 1088 164 49 18 chr9 118118830 118119055 -24152389 + Tigger1 DNA MER2_type 1 232 -2186 1326 153 0 0 chr9 118119089 118119278 -24152166 - AluSx SINE Alu -123 189 1 11299 142 32 4 chr9 118119278 118121267 -24150177 + Tigger1 DNA MER2_type 217 2260 -158 6032 98 24 3 chr9 118121267 118122215 -24149229 + L1MA1 LINE L1 5334 6301 -1 831 179 33 5 chr9 118122217 118122401 -24149043 + Tigger1 DNA MER2_type 2230 2418 0 2173 47 0 4 chr9 118122696 118122951 -24148493 - AluY SINE Alu -18 293 40 2370 99 0 3 chr9 118123493 118123796 -24147648 + AluSc SINE Alu 1 302 -7 265 219 16 23 chr9 118123898 118124026 -24147418 + CT-rich Low_complexity Low_complexity 3 129 0 1344 305 98 23 chr9 118125037 118126361 -24145083 + L1MEc LINE L1 37 1384 -4831 465 203 0 16 chr9 118126407 118126529 -24144915 + L1MEc LINE L1 1600 1715 -861 814 194 0 0 chr9 118126533 118126662 -24144782 + FLAM_C SINE Alu 1 129 -4 1454 231 78 56 chr9 118126725 118127054 -24144390 + MLT1F LTR MaLR 30 375 -167 2112 154 19 25 chr9 118127054 118127418 -24144026 + THE1B LTR MaLR 1 362 -2 1454 231 78 56 chr9 118127418 118127590 -24143854 + MLT1F LTR MaLR 375 542 0 714 252 30 89 chr9 118127614 118128051 -24143393 + L1ME1 LINE L1 3677 4081 -2065 2246 112 0 3 chr9 118128051 118128346 -24143098 - AluSq SINE Alu -19 294 1 714 252 30 89 chr9 118128346 118128416 -24143028 + L1ME1 LINE L1 4081 4154 -1992 3141 212 49 25 chr9 118128463 118129562 -24141882 + L1ME1 LINE L1 5037 6161 -5 252 365 0 0 chr9 118129655 118129740 -24141704 - L2 LINE L2 -3 3269 3185 268 377 35 42 chr9 118130054 118130338 -24141106 - L2 LINE L2 -800 2514 2233 995 333 172 34 chr9 118130579 118131649 -24139795 - L2 LINE L2 -1696 1618 401 325 302 170 6 chr9 118131852 118132011 -24139433 + MIR SINE MIR 7 191 -71 2376 101 0 0 chr9 118132033 118132341 -24139103 + AluY SINE Alu 1 308 -3 1070 216 54 8 chr9 118133390 118133631 -24137813 + MIR SINE MIR 11 262 0 186 354 12 0 chr9 118134689 118134771 -24136673 + MIR SINE MIR 48 130 -132 328 320 115 55 chr9 118136225 118136425 -24135019 - MIR SINE MIR -14 248 37 332 251 101 56 chr9 118136967 118137146 -24134298 + MLT1J2 LTR MaLR 79 265 -185 242 312 81 40 chr9 118137301 118137474 -24133970 - L2 LINE L2 -500 2814 2635 453 380 24 1 chr9 118137648 118137871 -24133573 - MIR SINE MIR -32 230 4 198 0 0 0 chr9 118137882 118137904 -24133540 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 2011 132 0 0 chr9 118137907 118138187 -24133257 - AluSq SINE Alu -31 282 3 267 31 0 0 chr9 118139139 118139171 -24132273 + (ATG)n Simple_repeat Simple_repeat 2 33 0 263 200 100 0 chr9 118139306 118139376 -24132068 + MER116 DNA Mariner 4 80 0 264 311 142 44 chr9 118139393 118139677 -24131767 - L2 LINE L2 -245 3068 2759 1462 171 0 0 chr9 118139729 118139957 -24131487 - L1PB4 LINE L1 -1 6155 5928 874 176 0 0 chr9 118139957 118140105 -24131339 - L1PB4 LINE L1 -85 6071 5924 * 1315 179 0 0 chr9 118140103 118140321 -24131123 - L1PB4 LINE L1 -87 6069 5852 416 378 6 0 chr9 118140324 118140504 -24130940 - L2 LINE L2 -604 2710 2530 301 234 122 43 chr9 118141864 118142056 -24129388 - MIR SINE MIR -44 218 11 284 302 78 120 chr9 118142404 118142646 -24128798 + L2 LINE L2 3030 3261 -11 431 250 0 10 chr9 118142735 118142839 -24128605 - L1ME2 LINE L1 -16 6148 6046 343 325 68 8 chr9 118143849 118143966 -24127478 - L2 LINE L2 -5 3267 3144 336 299 68 0 chr9 118144134 118144251 -24127193 + MIR SINE MIR 18 142 -66 1547 247 83 37 chr9 118144385 118144867 -24126577 - MLT1D LTR MaLR 0 505 2 333 0 0 0 chr9 118144912 118144949 -24126495 + (TA)n Simple_repeat Simple_repeat 1 37 0 324 304 20 10 chr9 118145028 118145130 -24126314 + MIR SINE MIR 3 105 -157 1347 209 3 49 chr9 118145339 118145645 -24125799 - AluJo SINE Alu -20 292 1 203 175 0 0 chr9 118145684 118145724 -24125720 + T-rich Low_complexity Low_complexity 1 40 0 879 165 25 0 chr9 118145724 118145882 -24125562 - LTR9 LTR ERV1 -86 526 365 1860 168 28 34 chr9 118145883 118146241 -24125203 - HUERS-P3 LTR ERV1 -8388 531 176 231 165 51 38 chr9 118146434 118146513 -24124931 + CT-rich Low_complexity Low_complexity 2 81 0 315 0 0 0 chr9 118146847 118146882 -24124562 + (CA)n Simple_repeat Simple_repeat 2 36 0 260 396 42 0 chr9 118146962 118147106 -24124338 + L2 LINE L2 3118 3267 -5 2290 90 0 7 chr9 118147486 118147787 -24123657 - AluY SINE Alu -12 299 1 193 172 17 103 chr9 118147847 118147905 -24123539 - L2 LINE L2 -2 3270 3218 460 250 30 73 chr9 118148558 118148722 -24122722 + MIR SINE MIR 18 174 -88 261 83 0 0 chr9 118148764 118148800 -24122644 + (TG)n Simple_repeat Simple_repeat 1 36 0 204 158 0 0 chr9 118148800 118148838 -24122606 + GA-rich Low_complexity Low_complexity 2 39 0 443 213 10 20 chr9 118148932 118149056 -24122388 - MIR SINE MIR -63 145 36 209 103 0 0 chr9 118150922 118150951 -24120493 + (A)n Simple_repeat Simple_repeat 1 29 0 182 37 37 0 chr9 118151217 118151244 -24120200 + (TAA)n Simple_repeat Simple_repeat 3 30 0 967 247 51 48 chr9 118151244 118151677 -24119767 + HAL1b LINE L1 382 815 -533 347 233 123 46 chr9 118151686 118151707 -24119737 + HAL1b LINE L1 881 899 -449 1852 77 8 58 chr9 118151707 118151967 -24119477 - AluSg SINE Alu -63 247 1 347 233 123 46 chr9 118151967 118152164 -24119280 + HAL1b LINE L1 899 1116 -232 271 325 31 74 chr9 118152730 118152893 -24118551 + L2 LINE L2 3116 3271 -1 1626 89 0 0 chr9 118152943 118153146 -24118298 + L1PA5 LINE L1 5952 6154 0 2133 170 35 28 chr9 118153825 118154375 -24117069 + MLT2A2 LTR ERVL 1 554 0 1224 108 28 11 chr9 118154511 118154687 -24116757 - THE1B LTR MaLR -185 179 1 12028 94 2 1 chr9 118154691 118156263 -24115181 - THE1B-int LTR MaLR -5 1575 2 2333 145 19 25 chr9 118156264 118156630 -24114814 - THE1B LTR MaLR 0 364 1 516 276 69 0 chr9 118157325 118157499 -24113945 - MIR SINE MIR -12 250 65 1217 159 14 45 chr9 118157596 118157816 -24113628 + MER20 DNA MER1_type 1 213 -6 22 0 0 0 chr9 118157835 118157857 -24113587 + AT_rich Low_complexity Low_complexity 1 22 0 578 332 52 56 chr9 118158769 118159261 -24112183 + L2 LINE L2 2753 3255 -17 266 227 9 18 chr9 118159289 118159399 -24112045 + GA-rich Low_complexity Low_complexity 2 110 0 230 274 0 20 chr9 118159466 118159517 -24111927 - MIR SINE MIR -129 79 30 219 349 26 20 chr9 118159761 118159913 -24111531 - MIR SINE MIR -7 255 103 297 353 56 52 chr9 118159970 118160056 -24111388 + L2 LINE L2 2966 3050 -222 2346 86 3 10 chr9 118160056 118160359 -24111085 - L1PA7 LINE L1 0 6154 5854 297 353 56 52 chr9 118160359 118160578 -24110866 + L2 LINE L2 3050 3272 0 305 287 37 37 chr9 118160586 118160694 -24110750 - L2 LINE L2 -20 3252 3145 187 250 185 56 chr9 118161180 118161288 -24110156 - L2 LINE L2 0 3313 3192 339 261 94 14 chr9 118161677 118161815 -24109629 - MIR SINE MIR -5 257 109 9290 111 16 16 chr9 118161817 118162342 -24109102 + HSMAR1 DNA Mariner 1 525 -762 2411 64 0 0 chr9 118162342 118162626 -24108818 + AluY SINE Alu 1 287 -24 234 0 0 0 chr9 118162626 118162652 -24108792 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2411 64 0 0 chr9 118162652 118162663 -24108781 + AluY SINE Alu 286 296 -15 9290 111 16 16 chr9 118162663 118163421 -24108023 + HSMAR1 DNA Mariner 524 1284 -3 346 341 8 8 chr9 118163619 118163745 -24107699 - MIR3 SINE MIR -38 170 45 371 364 76 9 chr9 118163850 118164075 -24107369 + MIR SINE MIR 20 259 -3 393 22 0 0 chr9 118164713 118164759 -24106685 + (TC)n Simple_repeat Simple_repeat 1 46 0 198 0 0 0 chr9 118164763 118164785 -24106659 + (TG)n Simple_repeat Simple_repeat 2 23 0 54 62 0 23 chr9 118164808 118164937 -24106507 + AT_rich Low_complexity Low_complexity 1 126 0 271 277 18 62 chr9 118165279 118165391 -24106053 - L2 LINE L2 -6 3266 3160 185 268 141 0 chr9 118165432 118165503 -24105941 + MIR SINE MIR 124 204 -58 528 276 201 0 chr9 118165519 118165631 -24105813 + MIR SINE MIR 3 91 -171 1975 128 58 76 chr9 118165631 118166013 -24105431 + THE1C LTR MaLR 1 375 0 528 276 201 0 chr9 118166013 118166114 -24105330 + MIR SINE MIR 91 259 -3 318 356 47 86 chr9 118166668 118167154 -24104290 - L2 LINE L2 0 3272 2806 596 306 36 27 chr9 118167914 118168133 -24103311 - MIR SINE MIR -3 259 39 253 274 71 48 chr9 118168668 118168836 -24102608 - MLT1K LTR MaLR -18 570 399 244 349 19 9 chr9 118169264 118169370 -24102074 - MIR SINE MIR -64 144 38 2968 140 101 35 chr9 118170457 118170950 -24100494 - MER1A DNA MER1_type 0 527 2 303 131 33 16 chr9 118171164 118171225 -24100219 + L1MB7 LINE L1 6123 6184 0 1268 195 53 7 chr9 118171442 118171744 -24099700 + MER33 DNA MER1_type 9 324 0 2213 120 3 0 chr9 118172037 118172336 -24099108 + AluSg SINE Alu 2 301 -9 548 113 0 12 chr9 118172673 118172753 -24098691 - MADE1 DNA Mariner -1 79 1 2448 67 0 29 chr9 118172812 118173127 -24098317 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 118173131 118173152 -24098292 + AT_rich Low_complexity Low_complexity 1 21 0 216 320 131 0 chr9 118173276 118173429 -24098015 - MIR SINE MIR -2 260 88 763 294 86 16 chr9 118174980 118175225 -24096219 + MIR SINE MIR 1 262 0 259 329 27 20 chr9 118175341 118175487 -24095957 - MIR SINE MIR -48 214 68 * 407 306 88 58 chr9 118175467 118175761 -24095683 + L2 LINE L2 3011 3313 0 327 264 144 36 chr9 118175845 118176012 -24095432 + MIR SINE MIR 77 261 -1 242 304 124 31 chr9 118176348 118176509 -24094935 - MIR3 SINE MIR -26 182 7 583 297 54 31 chr9 118177156 118177378 -24094066 - MIR SINE MIR -12 250 24 970 206 151 88 chr9 118177877 118178300 -24093144 - MLT1J2 LTR MaLR 0 450 1 2276 115 0 0 chr9 118178418 118178730 -24092714 + AluSx SINE Alu 1 312 0 400 324 14 14 chr9 118179085 118179230 -24092214 + MER117 DNA MER1_type 11 155 -42 1505 195 23 85 chr9 118179240 118179629 -24091815 - MLT1A1 LTR MaLR 0 365 1 1973 174 169 17 chr9 118179632 118180001 -24091443 + MLT2C2 LTR ERVL 1 437 -27 399 56 0 0 chr9 118180001 118180055 -24091389 + (TG)n Simple_repeat Simple_repeat 2 55 0 1973 174 169 17 chr9 118180055 118180088 -24091356 + MLT2C2 LTR ERVL 437 464 0 966 143 0 0 chr9 118180546 118180679 -24090765 + FLAM_C SINE Alu 1 133 0 194 281 122 0 chr9 118180913 118180995 -24090449 - L2 LINE L2 -10 3262 3171 650 248 14 56 chr9 118181082 118181296 -24090148 - L2 LINE L2 0 3313 3109 377 283 118 78 chr9 118181299 118181673 -24089771 - MLT1I LTR MaLR -2 407 19 399 224 12 0 chr9 118181677 118181762 -24089682 - L2 LINE L2 -507 2807 2722 399 293 41 0 chr9 118182755 118182878 -24088566 - MER94 DNA DNA 0 134 7 2076 150 29 40 chr9 118183230 118183609 -24087835 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr9 118183763 118183794 -24087650 + AT_rich Low_complexity Low_complexity 1 31 0 258 343 22 0 chr9 118184623 118184726 -24086718 + MER5A DNA MER1_type 10 103 -75 196 344 65 11 chr9 118184835 118184928 -24086516 - MIR SINE MIR -78 184 87 2494 62 0 3 chr9 118184960 118185268 -24086176 - AluY SINE Alu -4 307 1 22 35 0 0 chr9 118185423 118185452 -24085992 + AT_rich Low_complexity Low_complexity 1 29 0 354 207 378 7 chr9 118186043 118186178 -24085266 - MER5A DNA MER1_type -1 188 4 311 308 32 65 chr9 118186212 118186397 -24085047 + MIR SINE MIR 84 262 0 2653 134 368 7 chr9 118186705 118187309 -24084135 + MER52C LTR ERV1 1 822 -456 1472 128 0 0 chr9 118187309 118187512 -24083932 + AluSq SINE Alu 1 203 -110 7159 119 4 3 chr9 118187514 118188516 -24082928 - THE1A-int LTR MaLR -577 1003 1 2759 93 0 0 chr9 118188516 118188871 -24082573 - THE1A LTR MaLR 0 355 1 4825 181 100 14 chr9 118188871 118189863 -24081581 + MER52C-int LTR ERV1 2131 3207 -3884 3480 169 32 15 chr9 118189916 118190569 -24080875 + MER52C-int LTR ERV1 830 1493 -5598 631 145 23 38 chr9 118190577 118190708 -24080736 + MER52C-int LTR ERV1 1620 1748 -5789 * 1587 144 64 13 chr9 118190705 118191018 -24080426 - MER51-int LTR ERV1 -6470 1346 1018 257 89 44 0 chr9 118191031 118191076 -24080368 + MER52C-int LTR ERV1 1064 1110 -7010 1483 147 62 0 chr9 118191078 118191385 -24080059 + MER52C-int LTR ERV1 3946 4271 -3266 * 2076 174 128 18 chr9 118191375 118192206 -24079238 + MER52C-int LTR ERV1 2357 5748 -1670 401 57 0 0 chr9 118192204 118192257 -24079187 + MER52C-int LTR ERV1 5976 6028 -1177 * 1131 144 10 20 chr9 118192255 118192457 -24078987 + MER52C-int LTR ERV1 6892 7091 0 6355 153 72 35 chr9 118192458 118193688 -24077756 + MER52C LTR ERV1 2 1277 -1 366 282 80 21 chr9 118193698 118193869 -24077575 + MIR SINE MIR 61 250 -12 289 190 0 17 chr9 118194063 118194121 -24077323 - MER58 DNA MER1_type 0 2420 2364 271 159 0 95 chr9 118194120 118194183 -24077261 - MER58 DNA MER1_type -113 228 172 * 387 0 0 0 chr9 118194183 118194226 -24077218 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 373 295 25 25 chr9 118194448 118194570 -24076874 - MIR SINE MIR -56 152 31 183 80 0 0 chr9 118195080 118195105 -24076339 + (TAA)n Simple_repeat Simple_repeat 3 27 0 241 212 19 6 chr9 118195173 118195234 -24076210 - MIR SINE MIR -63 145 96 694 201 16 157 chr9 118195340 118195510 -24075934 + L1MB8 LINE L1 5908 6100 -78 1605 173 35 25 chr9 118195510 118195793 -24075651 - AluJb SINE Alu -26 286 1 694 201 16 157 chr9 118195793 118195812 -24075632 + L1MB8 LINE L1 6100 6120 -58 2348 79 0 51 chr9 118195812 118196127 -24075317 + AluY SINE Alu 1 299 -12 694 201 16 157 chr9 118196127 118196249 -24075195 + L1MB8 LINE L1 6120 6176 -2 374 395 0 0 chr9 118196654 118196783 -24074661 - L2 LINE L2 -1 3271 3143 477 273 6 31 chr9 118197197 118197358 -24074086 - MIR SINE MIR -34 228 72 * 698 339 122 11 chr9 118197355 118197797 -24073647 + L2 LINE L2 2075 2565 -749 751 221 26 91 chr9 118197811 118198151 -24073293 - MER33 DNA MER1_type -6 318 1 513 254 133 32 chr9 118198155 118198434 -24073010 + L2 LINE L2 2582 2888 -426 925 279 92 40 chr9 118198816 118199196 -24072248 + L2 LINE L2 2913 3312 -1 1943 196 32 44 chr9 118200443 118200942 -24070502 - MLT1D LTR MaLR -10 495 3 253 307 53 33 chr9 118201032 118201182 -24070262 + MER67B LTR ERV1 37 189 -472 2385 87 0 0 chr9 118201194 118201494 -24069950 - AluSc SINE Alu -9 300 1 266 278 62 35 chr9 118201609 118201753 -24069691 + MER67A LTR ERV1 395 542 -1 2332 79 0 0 chr9 118202164 118202468 -24068976 + AluY SINE Alu 1 304 -7 2442 64 0 6 chr9 118203228 118203539 -24067905 - AluY SINE Alu -2 309 1 243 369 93 40 chr9 118203697 118204356 -24067088 - L2 LINE L2 -210 3062 2376 671 264 65 0 chr9 118205381 118205566 -24065878 - MIR SINE MIR -13 249 55 430 361 157 11 chr9 118205565 118205947 -24065497 - L3 LINE CR1 -11 1566 1129 * 201 287 178 16 chr9 118206111 118206240 -24065204 + MIR SINE MIR 49 198 -64 12343 141 42 29 chr9 118206245 118207205 -24064239 + Tigger1 DNA MER2_type 11 957 -1461 2253 131 8 8 chr9 118207205 118207557 -24063887 - THE1A LTR MaLR -3 352 1 12343 141 42 29 chr9 118207557 118208509 -24062935 + Tigger1 DNA MER2_type 957 1895 -523 1473 178 10 56 chr9 118208509 118208812 -24062632 - AluJo SINE Alu -23 289 1 12343 141 42 29 chr9 118208812 118209194 -24062250 + Tigger1 DNA MER2_type 1895 2341 -77 2444 84 3 0 chr9 118209194 118209502 -24061942 + AluSp SINE Alu 1 309 -4 12343 141 42 29 chr9 118209502 118209582 -24061862 + Tigger1 DNA MER2_type 2341 2418 0 2671 257 141 36 chr9 118209654 118210713 -24060731 + L1MD1 LINE L1 18 1187 -5353 1310 175 68 45 chr9 118210704 118211103 -24060341 + L1MD1 LINE L1 2242 2649 -3891 * 310 82 20 0 chr9 118211107 118211156 -24060288 - MADE1 DNA Mariner -3 77 28 3418 268 62 34 chr9 118211157 118213040 -24058404 + L1MD1 LINE L1 2654 4588 -1952 1530 189 15 9 chr9 118213039 118213411 -24058033 + L1MD1 LINE L1 5605 5982 -654 * 2025 125 111 5 chr9 118213437 118213814 -24057630 - L1PA16 LINE L1 -4 6162 5746 3108 175 28 16 chr9 118213814 118214449 -24056995 + L1MD1 LINE L1 5976 6622 -14 287 97 194 0 chr9 118214613 118214675 -24056769 + MER103 DNA DNA 20 93 -73 2156 114 0 13 chr9 118214846 118215162 -24056282 + AluSx SINE Alu 1 312 0 366 279 122 29 chr9 118216860 118217032 -24054412 + MIR SINE MIR 5 192 -70 2206 84 36 19 chr9 118217486 118217794 -24053650 - AluSp SINE Alu 0 313 1 193 359 23 39 chr9 118218127 118218255 -24053189 + L2 LINE L2 2958 3083 -189 180 270 40 54 chr9 118218314 118218388 -24053056 + L2 LINE L2 3185 3257 -15 381 75 0 0 chr9 118218933 118218986 -24052458 + (CA)n Simple_repeat Simple_repeat 2 54 0 280 232 72 14 chr9 118219416 118219485 -24051959 + L2 LINE L2 3241 3313 0 268 230 11 69 chr9 118219749 118219836 -24051608 + MIR SINE MIR 70 151 -57 305 255 83 63 chr9 118220380 118220726 -24050718 + MLT1J2 LTR MaLR 73 409 0 222 343 14 14 chr9 118220970 118221043 -24050401 + MIR SINE MIR 20 92 -170 198 162 0 59 chr9 118221695 118221763 -24049681 + T-rich Low_complexity Low_complexity 4 67 0 213 313 0 0 chr9 118222645 118222693 -24048751 - L2 LINE L2 -215 3057 3010 326 256 24 104 chr9 118223266 118223391 -24048053 + MIR3 SINE MIR 42 156 -52 645 58 0 0 chr9 118223420 118223506 -24047938 + (TG)n Simple_repeat Simple_repeat 1 86 0 2792 129 5 2 chr9 118224524 118224957 -24046487 - MER57B LTR ERV1 0 434 1 250 266 64 53 chr9 118225189 118225283 -24046161 - MIR SINE MIR -158 104 10 502 253 26 32 chr9 118225489 118225643 -24045801 - MIR SINE MIR -1 261 109 644 266 113 14 chr9 118225968 118226190 -24045254 - MLT1D LTR MaLR 0 505 262 435 167 142 25 chr9 118226232 118226352 -24045092 - MLT1D LTR MaLR -359 146 13 1946 143 55 25 chr9 118226467 118226831 -24044613 - THE1C LTR MaLR 0 375 1 383 297 163 12 chr9 118227799 118228119 -24043325 + HsTC2 DNA Tc2 488 855 -1043 191 399 58 0 chr9 118228468 118228606 -24042838 + MIR3 SINE MIR 31 176 -32 28 0 0 0 chr9 118228755 118228783 -24042661 + AT_rich Low_complexity Low_complexity 1 28 0 188 108 0 27 chr9 118229000 118229037 -24042407 + (TTCTCC)n Simple_repeat Simple_repeat 1 36 0 287 356 54 43 chr9 118229082 118229460 -24041984 + L2 LINE L2 2706 3095 -177 547 310 28 37 chr9 118230119 118230335 -24041109 - MIR SINE MIR -26 236 23 207 312 0 26 chr9 118230645 118230722 -24040722 + MIR3 SINE MIR 15 89 -119 3122 35 5 2 chr9 118231172 118231572 -24039872 - L1P LINE L1 -1285 4861 4461 403 329 7 21 chr9 118232411 118232551 -24038893 - MIR SINE MIR -73 189 52 218 281 45 56 chr9 118232852 118232941 -24038503 - MIR3 SINE MIR -52 156 69 434 323 24 0 chr9 118233039 118233206 -24038238 + MIR SINE MIR 65 235 -27 309 270 31 82 chr9 118234909 118235068 -24036376 - MIR SINE MIR -61 201 51 314 345 0 9 chr9 118235150 118235260 -24036184 - L2 LINE L2 0 3272 3164 919 277 146 6 chr9 118235417 118235881 -24035563 - L2 LINE L2 -173 3140 2623 212 301 54 0 chr9 118237001 118237094 -24034350 - MIR SINE MIR -104 158 61 230 325 44 44 chr9 118237200 118237314 -24034130 + MIR SINE MIR 8 121 -141 1477 213 48 11 chr9 118238146 118238517 -24032927 - MSTD LTR MaLR -11 385 1 254 215 271 9 chr9 118238522 118238629 -24032815 - MIR SINE MIR -114 148 14 498 136 0 0 chr9 118240735 118240816 -24030628 + (TA)n Simple_repeat Simple_repeat 1 81 0 210 37 0 0 chr9 118240816 118240843 -24030601 + (GA)n Simple_repeat Simple_repeat 2 28 0 2302 117 8 17 chr9 118240864 118241222 -24030222 + THE1A LTR MaLR 1 355 0 479 322 41 16 chr9 118241684 118241922 -24029522 - MIR SINE MIR -14 248 6 248 128 0 21 chr9 118241944 118241991 -24029453 + (TTC)n Simple_repeat Simple_repeat 1 46 0 185 225 25 0 chr9 118242086 118242126 -24029318 - L2 LINE L2 -13 3259 3219 311 302 132 7 chr9 118242173 118242323 -24029121 - MIR SINE MIR -14 248 85 362 298 120 60 chr9 118242491 118242857 -24028587 + L1ME4a LINE L1 5518 5861 -260 700 205 0 0 chr9 118242857 118242974 -24028470 + FLAM_C SINE Alu 1 117 -16 195 42 0 0 chr9 118242978 118243002 -24028442 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 362 298 120 60 chr9 118243002 118243164 -24028280 + L1ME4a LINE L1 5863 6083 -38 306 251 295 39 chr9 118243171 118243378 -24028066 - MIR SINE MIR 0 262 3 188 143 24 0 chr9 118246824 118246866 -24024578 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1515 288 114 21 chr9 118246877 118247696 -24023748 - L2 LINE L2 -225 3088 2176 194 364 26 13 chr9 118247695 118247772 -24023672 - L2 LINE L2 -41 3231 3154 * 197 336 75 15 chr9 118248102 118248236 -24023208 + MIR SINE MIR 47 188 -74 1769 200 42 77 chr9 118248292 118248867 -24022577 - MER34B LTR ERV1 0 565 11 290 325 120 0 chr9 118248978 118249095 -24022349 - MLT1K LTR MaLR -109 479 349 442 237 118 26 chr9 118249252 118249404 -24022040 - MLT1K LTR MaLR -279 309 144 600 175 18 0 chr9 118249605 118249719 -24021725 + AluJb SINE Alu 196 311 -1 2428 236 30 30 chr9 118250445 118251088 -24020356 - L1MD3 LINE L1 0 7995 7353 246 309 24 12 chr9 118251199 118251283 -24020161 + L2 LINE L2 2701 2785 -529 377 300 59 56 chr9 118251361 118251648 -24019796 + L2 LINE L2 2991 3278 -35 876 89 0 44 chr9 118251731 118251866 -24019578 - MER4D LTR ERV1 0 903 775 633 49 0 0 chr9 118251869 118251950 -24019494 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 330 293 52 43 chr9 118253157 118253273 -24018171 - MIR3 SINE MIR -50 158 42 2123 113 10 10 chr9 118253899 118254200 -24017244 - AluSx SINE Alu -11 301 1 302 316 108 14 chr9 118254350 118254489 -24016955 - MIR3 SINE MIR -21 187 36 184 395 33 20 chr9 118254763 118254915 -24016529 - MER5A DNA MER1_type -1 188 35 358 306 74 8 chr9 118255199 118255320 -24016124 + L2 LINE L2 3182 3310 -3 252 298 65 48 chr9 118255346 118255470 -24015974 + L2 LINE L2 3139 3264 -8 1919 126 0 0 chr9 118255807 118256069 -24015375 + AluSq SINE Alu 35 296 -17 9099 28 6 2 chr9 118256277 118257444 -24014000 - L1PA3 LINE L1 -711 5444 4273 6184 19 0 10 chr9 118257444 118258165 -24013279 + L1PA3 LINE L1 5442 6155 0 226 261 67 79 chr9 118258986 118259020 -24012424 - MIR SINE MIR -52 210 177 2368 143 6 3 chr9 118259020 118259383 -24012061 - THE1B LTR MaLR 0 364 1 226 261 67 79 chr9 118259383 118259513 -24011931 - MIR SINE MIR -85 177 48 344 344 31 0 chr9 118259626 118259754 -24011690 + MIR SINE MIR 119 250 -12 2294 106 28 22 chr9 118259769 118260128 -24011316 + THE1C LTR MaLR 15 375 0 9408 130 33 33 chr9 118260128 118261708 -24009736 + THE1C-int LTR MaLR 1 1580 0 2079 125 22 44 chr9 118261719 118262080 -24009364 + THE1C LTR MaLR 18 370 -5 415 296 71 6 chr9 118262499 118262668 -24008776 + MIR SINE MIR 71 250 -12 1469 191 87 21 chr9 118263319 118263654 -24007790 - MLT1A2 LTR MaLR 0 374 18 295 316 68 17 chr9 118263686 118263803 -24007641 + L3 LINE CR1 1062 1184 -393 890 262 39 31 chr9 118264281 118264313 -24007131 - L1M1 LINE L1 -4373 3192 3162 2079 138 0 0 chr9 118264313 118264609 -24006835 - AluSg SINE Alu -14 296 1 890 262 39 31 chr9 118264609 118264931 -24006513 - L1M1 LINE L1 -4403 3162 2835 342 190 0 0 chr9 118264937 118265016 -24006428 + L1MA6 LINE L1 6222 6300 0 218 150 0 0 chr9 118265144 118265184 -24006260 + L2 LINE L2 3274 3313 0 7503 31 7 0 chr9 118265838 118267139 -24004305 - L1PA3 LINE L1 0 6155 4851 7488 39 7 1 chr9 118267139 118268065 -24003379 + L1PA3 LINE L1 3931 4861 -1285 198 312 0 26 chr9 118268515 118268592 -24002852 - MIR3 SINE MIR -119 89 15 553 311 27 36 chr9 118268900 118269119 -24002325 + MIR SINE MIR 20 236 -26 281 356 54 43 chr9 118269778 118270156 -24001288 - L2 LINE L2 -177 3095 2706 188 108 0 27 chr9 118270201 118270238 -24001206 + (GGAGAA)n Simple_repeat Simple_repeat 1 36 0 28 0 0 0 chr9 118270455 118270483 -24000961 + AT_rich Low_complexity Low_complexity 1 28 0 200 399 58 0 chr9 118270632 118270770 -24000674 - MIR3 SINE MIR -32 176 31 470 303 159 9 chr9 118271121 118271441 -24000003 - HsTC2 DNA Tc2 -1043 855 488 1946 143 55 25 chr9 118272413 118272777 -23998667 + THE1C LTR MaLR 1 375 0 710 235 93 109 chr9 118272880 118273276 -23998168 + MLT1D LTR MaLR 1 505 0 518 247 26 32 chr9 118273601 118273755 -23997689 + MIR SINE MIR 109 261 -1 246 266 64 53 chr9 118273961 118274055 -23997389 + MIR SINE MIR 10 104 -158 2781 132 5 2 chr9 118274287 118274720 -23996724 + MER57B LTR ERV1 1 434 0 21 0 0 0 chr9 118274887 118274908 -23996536 + AT_rich Low_complexity Low_complexity 1 21 0 557 72 12 0 chr9 118275744 118275827 -23995617 + (CA)n Simple_repeat Simple_repeat 1 84 0 308 264 24 104 chr9 118275856 118275981 -23995463 - MIR3 SINE MIR -52 156 42 214 313 0 0 chr9 118276554 118276602 -23994842 + L2 LINE L2 3010 3057 -215 198 162 0 59 chr9 118277484 118277552 -23993892 + A-rich Low_complexity Low_complexity 4 67 0 234 329 14 14 chr9 118278204 118278277 -23993167 - MIR SINE MIR -170 92 20 394 283 158 65 chr9 118278521 118278930 -23992514 - MLT1J2 LTR MaLR 0 412 1 268 230 11 69 chr9 118279411 118279498 -23991946 - MIR SINE MIR -57 151 70 285 232 72 14 chr9 118279762 118279831 -23991613 - L2 LINE L2 0 3313 3241 381 75 0 0 chr9 118280261 118280314 -23991130 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 359 23 39 chr9 118280993 118281121 -23990323 - L2 LINE L2 -189 3083 2958 2034 85 37 27 chr9 118281454 118281782 -23989662 + AluSp SINE Alu 1 313 0 371 279 122 29 chr9 118282219 118282391 -23989053 - MIR SINE MIR -70 192 5 2121 117 0 13 chr9 118284091 118284407 -23987037 - AluSx SINE Alu 0 312 1 301 234 133 0 chr9 118284512 118284640 -23986804 - MER103 DNA DNA -2 164 20 3141 173 28 17 chr9 118284804 118285444 -23986000 - L1MD1 LINE L1 -14 6622 5976 2026 127 108 5 chr9 118285444 118285818 -23985626 + L1PA16 LINE L1 5746 6162 -4 1623 189 15 9 chr9 118285844 118286216 -23985228 - L1MD1 LINE L1 -654 5982 5605 * 3638 269 65 38 chr9 118286215 118288099 -23983345 - L1MD1 LINE L1 -1952 4588 2654 326 82 20 0 chr9 118288100 118288149 -23983295 + MADE1 DNA Mariner 28 77 -3 1359 191 65 40 chr9 118288153 118288551 -23982893 - L1MD1 LINE L1 -3891 2649 2242 * 2131 271 87 46 chr9 118288542 118289601 -23981843 - L1MD1 LINE L1 -5353 1187 18 12201 145 42 29 chr9 118289673 118289753 -23981691 - Tigger1 DNA MER2_type 0 2418 2341 2455 84 3 0 chr9 118289753 118290061 -23981383 - AluSp SINE Alu -4 309 1 12201 145 42 29 chr9 118290061 118290443 -23981001 - Tigger1 DNA MER2_type -77 2341 1966 1396 191 10 56 chr9 118290443 118290746 -23980698 + AluJo SINE Alu 1 289 -23 12201 145 42 29 chr9 118290746 118291698 -23979746 - Tigger1 DNA MER2_type -452 1966 1028 2271 123 11 8 chr9 118291698 118292049 -23979395 + THE1A LTR MaLR 1 352 -3 12201 145 42 29 chr9 118292049 118293008 -23978436 - Tigger1 DNA MER2_type -1390 1028 11 201 287 178 16 chr9 118293013 118293142 -23978302 - MIR SINE MIR -64 198 49 397 369 129 10 chr9 118293306 118293615 -23977829 + L3 LINE CR1 1129 1474 -103 196 321 123 0 chr9 118293687 118293768 -23977676 + MIR SINE MIR 55 145 -63 267 368 93 40 chr9 118294897 118295556 -23975888 + L2 LINE L2 2376 3062 -210 2441 67 0 6 chr9 118295714 118296026 -23975418 + AluY SINE Alu 1 310 -1 2325 77 0 0 chr9 118296787 118297087 -23974357 - AluY SINE Alu -11 300 1 266 278 62 35 chr9 118297498 118297642 -23973802 - MER67A LTR ERV1 -1 542 395 2131 127 0 0 chr9 118297758 118298058 -23973386 + AluSc SINE Alu 1 300 -9 253 307 53 33 chr9 118298070 118298220 -23973224 - MER67B LTR ERV1 -472 189 37 1865 201 34 44 chr9 118298310 118298808 -23972636 + MLT1D LTR MaLR 3 495 -10 925 279 92 40 chr9 118300055 118300435 -23971009 - L2 LINE L2 -1 3312 2913 513 254 133 32 chr9 118300817 118301096 -23970348 - L2 LINE L2 -426 2888 2582 751 221 26 91 chr9 118301100 118301440 -23970004 + MER33 DNA MER1_type 1 318 -6 685 342 122 11 chr9 118301454 118301896 -23969548 - L2 LINE L2 -749 2565 2075 477 273 6 31 chr9 118301893 118302054 -23969390 + MIR SINE MIR 72 228 -34 * 1669 221 2 3 chr9 118302421 118302869 -23968575 + L1M LINE L1 4949 5395 -779 2651 146 44 4 chr9 118302976 118303429 -23968015 + L1PA16 LINE L1 5683 6153 -13 619 141 0 0 chr9 118303548 118303640 -23967804 + L1PB4 LINE L1 6053 6144 -12 206 382 174 0 chr9 118303755 118303933 -23967511 - MIR SINE MIR -25 237 29 293 279 150 29 chr9 118304098 118304238 -23967206 - MIR3 SINE MIR -22 186 30 1277 206 127 114 chr9 118305946 118306673 -23964771 - LTR1B LTR ERV1 0 826 91 340 361 62 40 chr9 118306825 118307052 -23964392 - MIR SINE MIR -11 251 20 252 306 24 24 chr9 118308323 118308408 -23963036 + MIR3 SINE MIR 15 99 -109 1944 109 84 0 chr9 118308619 118308894 -23962550 + AluSq SINE Alu 1 298 -15 184 176 0 98 chr9 118309641 118309692 -23961752 + L3 LINE CR1 1440 1485 -92 191 304 0 0 chr9 118310034 118310080 -23961364 + MIR SINE MIR 69 114 -94 503 157 39 0 chr9 118310970 118311072 -23960372 - L1MA8 LINE L1 -22 6269 6164 3409 67 0 7 chr9 118311072 118311523 -23959921 + LTR7 LTR ERV1 1 448 -2 3540 121 16 18 chr9 118311525 118312146 -23959298 + HERVH LTR ERV1 1 620 -7093 15481 97 34 16 chr9 118312147 118314659 -23956785 + HERVH LTR ERV1 437 2995 -4718 781 145 41 0 chr9 118314638 118314783 -23956661 + HERVH LTR ERV1 3140 3290 -4423 * 2989 127 2 6 chr9 118314773 118315276 -23956168 + HERVH LTR ERV1 3492 3992 -3721 2742 154 3 2 chr9 118315280 118315895 -23955549 + HERVH LTR ERV1 4489 5149 -2564 902 100 7 13 chr9 118315896 118316046 -23955398 + HERVH LTR ERV1 5600 5748 -1965 1893 68 53 25 chr9 118316047 118316368 -23955076 + HERVH LTR ERV1 7384 7713 0 3419 62 0 9 chr9 118316368 118316818 -23954626 + LTR7 LTR ERV1 1 446 -4 2004 119 32 50 chr9 118316823 118317227 -23954217 - L1MA8 LINE L1 -124 6167 5771 1620 217 43 62 chr9 118317801 118318313 -23953131 - MLT2B1 LTR ERVL -1 519 18 1897 100 38 24 chr9 118318321 118318610 -23952834 + AluSq SINE Alu 5 297 -16 243 357 41 20 chr9 118318771 118318869 -23952575 - L3 LINE CR1 -44 1533 1434 197 281 52 74 chr9 118318926 118319061 -23952383 - MIR SINE MIR -13 249 118 21 0 0 0 chr9 118319061 118319082 -23952362 + AT_rich Low_complexity Low_complexity 1 21 0 197 311 16 66 chr9 118319432 118319554 -23951890 + L2 LINE L2 3183 3298 -15 190 318 71 56 chr9 118319657 118319783 -23951661 + L2 LINE L2 3145 3272 0 1958 214 62 20 chr9 118320474 118321059 -23950385 + L1M4c LINE L1 1221 1829 -4555 1295 251 38 62 chr9 118321096 118321755 -23949689 - L1M4c LINE L1 -5427 1115 493 1934 153 10 0 chr9 118321772 118322067 -23949377 - AluSx SINE Alu -14 298 1 548 279 72 38 chr9 118322496 118322815 -23948629 + L1MC4a LINE L1 5598 5927 -1881 236 314 65 16 chr9 118323028 118323152 -23948292 + L2 LINE L2 2732 2861 -453 42 0 0 0 chr9 118323182 118323224 -23948220 + AT_rich Low_complexity Low_complexity 1 42 0 299 339 107 57 chr9 118323242 118323394 -23948050 + L2 LINE L2 2897 3040 -273 1966 179 0 0 chr9 118323394 118323702 -23947742 + AluJb SINE Alu 3 310 -2 299 339 107 57 chr9 118323702 118323915 -23947529 + L2 LINE L2 3040 3280 -33 188 298 12 95 chr9 118326967 118327051 -23944393 + MIR SINE MIR 1 77 -185 288 371 73 0 chr9 118327185 118327336 -23944108 - MIR SINE MIR -72 190 29 236 309 78 49 chr9 118328065 118328251 -23943193 + MIR3 SINE MIR 5 192 -63 301 213 12 62 chr9 118328999 118329079 -23942365 - MIR SINE MIR -117 91 16 180 264 155 16 chr9 118329545 118329674 -23941770 - L2 LINE L2 -181 3091 2945 1983 140 0 3 chr9 118330274 118330595 -23940849 - AluSx SINE Alu 0 312 1 296 256 94 43 chr9 118330866 118330983 -23940461 - MIR3 SINE MIR -5 203 81 242 305 37 73 chr9 118331463 118331627 -23939817 + MIR3 SINE MIR 13 170 -38 304 300 82 0 chr9 118332898 118333008 -23938436 + MIR SINE MIR 17 135 -73 188 346 37 0 chr9 118333010 118333091 -23938353 + L2 LINE L2 3218 3301 -12 322 227 11 0 chr9 118333252 118333340 -23938104 - MER53 DNA DNA 0 189 101 216 319 37 107 chr9 118333675 118334029 -23937415 + L2 LINE L2 2019 2347 -967 248 323 98 0 chr9 118334682 118334815 -23936629 - MIR SINE MIR -12 250 105 659 234 0 0 chr9 118334845 118334969 -23936475 - MER45A DNA AcHobo -53 125 2 317 302 40 12 chr9 118335498 118335628 -23935816 - MIR SINE MIR -83 125 36 21 0 0 0 chr9 118335637 118335658 -23935786 + AT_rich Low_complexity Low_complexity 1 21 0 2216 102 0 0 chr9 118335724 118336017 -23935427 + AluSc SINE Alu 1 293 -16 1848 139 56 0 chr9 118336597 118336884 -23934560 - AluSx SINE Alu -9 303 1 27 0 0 0 chr9 118337378 118337405 -23934039 + AT_rich Low_complexity Low_complexity 1 27 0 323 331 32 24 chr9 118337686 118337810 -23933634 + L2 LINE L2 2208 2332 -982 219 139 0 0 chr9 118337895 118337931 -23933513 + (T)n Simple_repeat Simple_repeat 1 36 0 268 377 57 19 chr9 118338945 118339104 -23932340 + L1ME3A LINE L1 427 591 -5528 648 325 61 57 chr9 118339109 118339552 -23931892 + L1ME3A LINE L1 620 1067 -5052 2505 84 0 0 chr9 118339552 118339863 -23931581 + AluY SINE Alu 1 311 0 648 325 61 57 chr9 118339863 118339893 -23931551 + L1ME3A LINE L1 1067 1095 -5024 341 273 131 43 chr9 118340019 118340412 -23931032 + L1ME3A LINE L1 1095 1656 -4473 491 306 87 36 chr9 118340895 118341287 -23930157 + L1ME3A LINE L1 2217 2628 -3501 324 241 50 30 chr9 118341582 118341781 -23929663 + L1ME3A LINE L1 2832 3034 -3095 2098 64 6 76 chr9 118341804 118342029 -23929415 + L1PA13 LINE L1 5856 6052 -111 2121 130 7 0 chr9 118342029 118342337 -23929107 + AluSx SINE Alu 3 312 0 2098 64 6 76 chr9 118342337 118342441 -23929003 + L1PA13 LINE L1 6052 6162 -1 1765 183 0 34 chr9 118342458 118342781 -23928663 + AluJb SINE Alu 1 312 0 2339 89 0 6 chr9 118342877 118343190 -23928254 - AluY SINE Alu 0 311 1 24 32 0 0 chr9 118343197 118343228 -23928216 + AT_rich Low_complexity Low_complexity 1 31 0 5113 161 60 35 chr9 118343332 118344947 -23926497 - L1PA16 LINE L1 -8 6861 5212 * 5569 205 25 9 chr9 118344939 118345939 -23925505 - L1PA16 LINE L1 -5832 1017 2 2103 108 7 16 chr9 118346154 118346460 -23924984 + AluSg SINE Alu 1 303 -7 720 130 23 0 chr9 118346604 118346735 -23924709 - L1MA5 LINE L1 -2 6298 6165 351 245 77 28 chr9 118346963 118347106 -23924338 + L1ME3A LINE L1 3790 3939 -2190 867 291 39 28 chr9 118347167 118347524 -23923920 - MLT1I LTR MaLR 0 409 49 2244 102 7 0 chr9 118347534 118347838 -23923606 - AluSc SINE Alu -3 306 1 549 296 148 31 chr9 118347925 118348507 -23922937 + L1ME3A LINE L1 3988 4637 -1492 351 277 87 87 chr9 118348814 118349067 -23922377 + L1ME3A LINE L1 5006 5258 -871 949 302 60 16 chr9 118349079 118349667 -23921777 + L1ME3A LINE L1 5291 5907 -246 267 232 0 0 chr9 118349894 118349976 -23921468 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 1468 211 113 3 chr9 118349978 118350305 -23921139 - MLT1A1 LTR MaLR 0 365 3 333 0 0 0 chr9 118350307 118350344 -23921100 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 239 246 16 0 chr9 118350872 118350933 -23920511 + L2 LINE L2 3252 3313 0 300 196 111 128 chr9 118352266 118352572 -23918872 - LTR50 LTR ERVL 0 795 495 232 104 62 0 chr9 118352921 118352969 -23918475 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 265 287 75 16 chr9 118353140 118353330 -23918114 - L1ME LINE L1 -344 5777 5576 658 178 0 59 chr9 118353597 118353732 -23917712 - FLAM_C SINE Alu -16 127 1 258 386 20 39 chr9 118354148 118354301 -23917143 + L2 LINE L2 3117 3266 -6 471 194 4 174 chr9 118354384 118354631 -23916813 + L1MA10 LINE L1 6117 6321 -13 2233 88 10 3 chr9 118354923 118355220 -23916224 - AluSp SINE Alu -14 299 1 229 246 15 0 chr9 118356123 118356188 -23915256 - L1ME3A LINE L1 -15 6155 6090 1512 161 86 15 chr9 118356208 118356475 -23914969 - AluSx SINE Alu -26 286 1 654 188 67 86 chr9 118356479 118356734 -23914710 - L1ME3A LINE L1 -72 6098 5849 25 65 0 0 chr9 118356738 118356784 -23914660 + AT_rich Low_complexity Low_complexity 1 46 0 441 0 0 0 chr9 118356925 118356974 -23914470 + (CA)n Simple_repeat Simple_repeat 2 50 0 253 182 15 15 chr9 118357051 118357117 -23914327 + CT-rich Low_complexity Low_complexity 2 67 0 358 321 88 25 chr9 118358345 118358504 -23912940 - MIR SINE MIR -71 191 23 194 204 68 0 chr9 118359115 118359159 -23912285 - L2 LINE L2 -240 3032 2986 193 287 46 23 chr9 118359314 118359401 -23912043 - L2 LINE L2 -460 2854 2766 2326 132 14 3 chr9 118359707 118360078 -23911366 + THE1C LTR MaLR 1 375 0 319 357 0 0 chr9 118362207 118362333 -23909111 + MIR3 SINE MIR 52 177 -31 197 62 0 31 chr9 118362818 118362850 -23908594 + (TAA)n Simple_repeat Simple_repeat 2 32 0 235 310 23 31 chr9 118363089 118363218 -23908226 - MIR SINE MIR -62 146 19 284 283 214 44 chr9 118363316 118363475 -23907969 + MER63A DNA MER1_type 1 186 -24 331 336 9 9 chr9 118363859 118363975 -23907469 + L2 LINE L2 3188 3303 -10 230 298 163 7 chr9 118364013 118364154 -23907290 + MIR SINE MIR 73 235 -27 501 151 0 0 chr9 118364181 118364267 -23907177 + CT-rich Low_complexity Low_complexity 2 87 0 258 105 0 0 chr9 118364287 118364325 -23907119 + (TTA)n Simple_repeat Simple_repeat 2 39 0 257 313 10 31 chr9 118364743 118364839 -23906605 - L2 LINE L2 -18 3295 3202 274 354 68 10 chr9 118364901 118365107 -23906337 - L2 LINE L2 -428 2886 2669 210 250 88 75 chr9 118365142 118365222 -23906222 + L2 LINE L2 3191 3271 -1 38 22 0 0 chr9 118365239 118365284 -23906160 + AT_rich Low_complexity Low_complexity 1 45 0 7298 13 2 0 chr9 118365294 118366128 -23905316 - L1PA2 LINE L1 -8 6147 5312 5312 31 0 0 chr9 118366124 118366767 -23904677 + L1PA2 LINE L1 4653 5295 -851 * 35 71 0 0 chr9 118366767 118366837 -23904607 + AT_rich Low_complexity Low_complexity 1 70 0 195 396 89 12 chr9 118366837 118367006 -23904438 - MIR SINE MIR -61 201 20 2750 203 77 29 chr9 118367235 118367934 -23903510 - MER44D DNA MER2_type 0 605 1 617 286 73 73 chr9 118368161 118368546 -23902898 - MLT1J LTR MaLR 0 511 127 310 345 84 14 chr9 118368991 118369133 -23902311 - MER5A DNA MER1_type 0 189 38 425 363 22 18 chr9 118369196 118369422 -23902022 - MIR SINE MIR -34 228 2 209 362 81 7 chr9 118370274 118370423 -23901021 + L2 LINE L2 1850 2009 -1305 672 323 18 14 chr9 118370548 118370768 -23900676 + MIR SINE MIR 29 249 -13 757 282 90 57 chr9 118371473 118372191 -23899253 + L1ME LINE L1 272 1020 -5050 1730 116 34 10 chr9 118372191 118372485 -23898959 + L1MA2 LINE L1 6004 6304 0 757 282 90 57 chr9 118372485 118372558 -23898886 + L1ME LINE L1 1020 1089 -4981 2654 118 0 0 chr9 118372628 118373008 -23898436 + L1PA8 LINE L1 5793 6172 0 338 279 81 72 chr9 118373187 118373409 -23898035 + L1ME LINE L1 1241 1464 -4616 675 239 78 24 chr9 118373427 118373682 -23897762 + L1ME2 LINE L1 32 300 -6123 890 116 12 41 chr9 118373690 118373862 -23897582 - L1MA7 LINE L1 -2 6289 6123 237 114 0 0 chr9 118374110 118374145 -23897299 - L1MA7 LINE L1 -152 6139 6105 * 595 307 111 10 chr9 118374143 118374449 -23896995 + L1ME2 LINE L1 301 637 -5786 1090 259 109 28 chr9 118374521 118375002 -23896442 + L1ME2 LINE L1 3776 4217 -2742 673 283 11 5 chr9 118375002 118375186 -23896258 + MER5A DNA MER1_type 4 188 -1 1090 259 109 28 chr9 118375186 118375403 -23896041 + L1ME2 LINE L1 4217 4415 -2544 2583 90 26 18 chr9 118375403 118375791 -23895653 + L1PA13 LINE L1 5773 6163 0 1090 259 109 28 chr9 118375791 118377978 -23893466 + L1ME2 LINE L1 4415 6925 -34 223 382 106 24 chr9 118378965 118379258 -23892186 + L2 LINE L2 2988 3304 -9 313 265 10 39 chr9 118379389 118379491 -23891953 + MLT1I LTR MaLR 297 395 -14 27 0 0 0 chr9 118379776 118379803 -23891641 + AT_rich Low_complexity Low_complexity 1 27 0 261 279 38 13 chr9 118380528 118380607 -23890837 - MIR SINE MIR -112 150 70 30 69 0 0 chr9 118380689 118380747 -23890697 + AT_rich Low_complexity Low_complexity 1 58 0 183 100 0 0 chr9 118381226 118381256 -23890188 + (A)n Simple_repeat Simple_repeat 1 30 0 644 112 17 17 chr9 118382459 118382575 -23888869 + L1PB3 LINE L1 5308 5423 -733 1187 122 6 0 chr9 118382578 118382742 -23888702 + AluSx SINE Alu 1 165 -147 456 146 12 0 chr9 118382743 118382825 -23888619 + AluSc SINE Alu 224 306 -3 2269 115 3 52 chr9 118382825 118383207 -23888237 + L1PB3 LINE L1 5420 5782 -372 433 113 44 28 chr9 118383214 118383467 -23887977 + (TA)n Simple_repeat Simple_repeat 1 257 0 23 33 0 0 chr9 118383471 118383501 -23887943 + AT_rich Low_complexity Low_complexity 1 30 0 2013 149 35 24 chr9 118383505 118383874 -23887570 + L1PB3 LINE L1 5782 6154 0 2239 153 37 37 chr9 118384042 118384532 -23886912 + MLT2A2 LTR ERVL 1 491 -63 7174 94 58 61 chr9 118384532 118385802 -23885642 - MER11A LTR ERVK 0 1266 1 2239 153 37 37 chr9 118385802 118385867 -23885577 + MLT2A2 LTR ERVL 491 554 0 409 267 46 23 chr9 118386185 118386316 -23885128 - MIR SINE MIR -42 220 87 238 361 104 30 chr9 118387162 118387431 -23884013 - L2 LINE L2 -338 2976 2688 323 368 111 19 chr9 118387542 118387912 -23883532 + L1MC/D LINE L1 5332 5735 -2073 257 301 45 65 chr9 118388017 118388216 -23883228 + LTR33 LTR ERVL 155 349 -172 367 275 46 23 chr9 118388234 118388365 -23883079 - MIR SINE MIR -42 220 87 714 261 49 29 chr9 118389097 118389342 -23882102 + MIR SINE MIR 13 262 0 244 327 28 28 chr9 118389497 118389604 -23881840 + L3 LINE CR1 348 454 -1123 381 340 19 45 chr9 118389832 118389988 -23881456 + MIR SINE MIR 2 153 -109 538 263 39 45 chr9 118390044 118390223 -23881221 - MIR SINE MIR -81 181 4 450 300 49 38 chr9 118390269 118390532 -23880912 - L2 LINE L2 0 3313 3048 248 350 60 0 chr9 118391458 118391558 -23879886 + MIR3 SINE MIR 4 109 -99 22 80 0 0 chr9 118391709 118391759 -23879685 + AT_rich Low_complexity Low_complexity 1 50 0 399 265 34 8 chr9 118391830 118391947 -23879497 - L1MC4 LINE L1 -148 7894 7775 814 264 61 108 chr9 118391947 118392699 -23878745 - L1M4c LINE L1 -4453 2372 1503 1358 247 4 0 chr9 118392716 118392991 -23878453 - AluJo SINE Alu -36 276 1 585 243 14 0 chr9 118392991 118393131 -23878313 - L1M4c LINE L1 -5031 1511 1370 1917 132 73 22 chr9 118393271 118393628 -23877816 - THE1C LTR MaLR 0 375 1 9243 146 10 36 chr9 118393629 118395248 -23876196 - THE1C-int LTR MaLR -1 1579 3 1750 150 67 28 chr9 118395250 118395609 -23875835 - THE1C LTR MaLR 0 375 3 694 239 114 28 chr9 118395652 118396074 -23875370 - L1MDa LINE L1 -2699 3841 3384 438 282 12 7 chr9 118396086 118396290 -23875154 - L1MDa LINE L1 -5175 1355 1126 4826 186 25 8 chr9 118396335 118396588 -23874856 + L1MC1 LINE L1 5360 5607 -726 267 103 0 0 chr9 118396588 118396627 -23874817 + (CTATA)n Simple_repeat Simple_repeat 1 39 0 4826 186 25 8 chr9 118396627 118396932 -23874512 + L1MC1 LINE L1 5607 5905 -428 3088 163 37 25 chr9 118396932 118397527 -23873917 + MER7C DNA MER2_type 1 602 0 4826 186 25 8 chr9 118397527 118397925 -23873519 + L1MC1 LINE L1 5905 6333 0 * 7323 263 54 25 chr9 118397918 118398629 -23872815 + L1ME1 LINE L1 2174 2862 -3296 2096 110 3 3 chr9 118398629 118398930 -23872514 - AluY SINE Alu -10 301 1 7323 263 54 25 chr9 118398930 118401366 -23870078 + L1ME1 LINE L1 2862 5415 -743 902 226 73 55 chr9 118401365 118401692 -23869752 + L1ME1 LINE L1 5830 6162 -4 * 911 213 83 65 chr9 118401772 118401917 -23869527 + L1ME3A LINE L1 4458 4599 -1547 210 37 0 0 chr9 118401917 118401944 -23869500 + (TG)n Simple_repeat Simple_repeat 2 28 0 911 213 83 65 chr9 118401944 118402244 -23869200 + L1ME3A LINE L1 4599 4911 -1235 274 314 57 0 chr9 118402288 118402428 -23869016 + L1ME3A LINE L1 4998 5145 -1001 259 132 57 19 chr9 118402661 118402714 -23868730 + L1PB3 LINE L1 5461 5515 -639 1289 158 174 32 chr9 118402714 118403025 -23868419 - THE1A LTR MaLR 0 355 1 1114 88 0 19 chr9 118403025 118403185 -23868259 - THE1A-int LTR MaLR 0 1580 1424 563 141 0 0 chr9 118403173 118403265 -23868179 - THE1B-int LTR MaLR -1488 92 1 * 1986 160 33 28 chr9 118403265 118403627 -23867817 - THE1B LTR MaLR 0 364 1 1570 134 7 55 chr9 118403627 118403767 -23867677 + L1PB3 LINE L1 5511 5656 -495 2261 127 19 25 chr9 118403767 118404129 -23867315 + THE1B LTR MaLR 1 360 -4 10889 105 6 38 chr9 118404133 118404538 -23866906 + THE1B-int LTR MaLR 1 417 -1163 731 83 9 0 chr9 118404538 118404646 -23866798 + (TTCC)n Simple_repeat Simple_repeat 4 112 0 10889 105 6 38 chr9 118404646 118404659 -23866785 + THE1B-int LTR MaLR 417 429 -1151 1927 122 17 44 chr9 118404659 118404955 -23866489 - AluSx SINE Alu -9 303 16 10889 105 6 38 chr9 118404955 118406167 -23865277 + THE1B-int LTR MaLR 429 1580 0 2094 140 19 30 chr9 118406169 118406533 -23864911 + THE1B LTR MaLR 3 362 -2 1570 134 7 55 chr9 118406533 118406675 -23864769 + L1PB3 LINE L1 5660 5787 -364 2154 135 9 0 chr9 118406754 118407101 -23864343 + L1PB3 LINE L1 5797 6146 -8 1036 57 6 13 chr9 118407101 118407259 -23864185 + (TCTA)n Simple_repeat Simple_repeat 2 158 0 954 285 41 45 chr9 118407376 118407765 -23863679 + L1M4c LINE L1 1069 1457 -4927 1968 149 0 7 chr9 118407765 118408060 -23863384 - AluSx SINE Alu -17 295 3 954 285 41 45 chr9 118408060 118408204 -23863240 + L1M4c LINE L1 1457 1600 -4784 699 260 101 22 chr9 118408208 118408447 -23862997 + L1M1 LINE L1 2974 3193 -4374 1571 199 13 3 chr9 118408447 118408748 -23862696 + AluJb SINE Alu 4 307 -5 699 260 101 22 chr9 118408748 118409058 -23862386 + L1M1 LINE L1 3193 3562 -4005 279 331 38 0 chr9 118409639 118409796 -23861648 + L1ME3A LINE L1 5131 5293 -853 376 226 198 9 chr9 118409843 118409971 -23861473 + L1ME3A LINE L1 5374 5477 -693 955 167 21 94 chr9 118409971 118410204 -23861240 - MER20 DNA MER1_type 0 219 4 376 226 198 9 chr9 118410204 118410287 -23861157 + L1ME3A LINE L1 5477 5625 -545 823 256 197 17 chr9 118410292 118410713 -23860731 + L1ME3A LINE L1 5660 6156 -14 2451 176 27 55 chr9 118410822 118411407 -23860037 - L1MA10 LINE L1 0 6334 5766 2182 97 0 27 chr9 118411648 118411947 -23859497 + AluSc SINE Alu 1 291 -18 276 311 9 28 chr9 118412043 118412149 -23859295 + MLT1K LTR MaLR 18 121 -467 548 179 0 0 chr9 118413211 118413345 -23858099 - AluJ SINE Alu 0 334 201 * 741 197 7 7 chr9 118413341 118413483 -23857961 - AluJ SINE Alu -170 142 1 530 294 16 0 chr9 118413486 118413612 -23857832 - MIR SINE MIR -106 156 29 323 362 68 12 chr9 118413846 118414009 -23857435 + MER91A DNA MER1_type 12 183 -13 228 35 0 0 chr9 118414195 118414224 -23857220 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2077 60 30 4 chr9 118414513 118414778 -23856666 - AluY SINE Alu -39 272 1 1684 207 36 27 chr9 118414886 118415335 -23856109 - L1MD3 LINE L1 -16 7979 7527 711 233 99 54 chr9 118415605 118415918 -23855526 - L1MC4a LINE L1 -451 7357 7031 3518 209 22 30 chr9 118416532 118417246 -23854198 + L1MB5 LINE L1 5319 6026 -148 2062 133 3 0 chr9 118417246 118417548 -23853896 + AluSq SINE Alu 1 303 -10 3518 209 22 30 chr9 118417548 118417695 -23853749 + L1MB5 LINE L1 6026 6173 -1 778 261 158 51 chr9 118417757 118418365 -23853079 - L1ME3 LINE L1 -2 6160 5488 270 81 0 0 chr9 118418534 118418571 -23852873 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 410 203 44 0 chr9 118418579 118418737 -23852707 + (TA)n Simple_repeat Simple_repeat 1 165 0 2357 301 72 17 chr9 118418881 118420317 -23851127 - L1ME3 LINE L1 -966 5180 3667 333 0 0 0 chr9 118420748 118420785 -23850659 + (CA)n Simple_repeat Simple_repeat 2 38 0 1700 94 22 38 chr9 118420805 118421072 -23850372 - L1PA10 LINE L1 -11 6157 5895 466 287 77 28 chr9 118421577 118421758 -23849686 + L1MEd LINE L1 978 1167 -5363 392 222 90 60 chr9 118421900 118422134 -23849310 + L1MEd LINE L1 1276 1516 -5014 482 284 51 82 chr9 118422177 118422369 -23849075 + L1MEd LINE L1 1722 1900 -4640 2146 126 0 3 chr9 118422369 118422678 -23848766 - AluY SINE Alu -3 308 1 482 284 51 82 chr9 118422678 118422840 -23848604 + L1MEd LINE L1 1900 2065 -4475 252 314 45 36 chr9 118423212 118423432 -23848012 + L1MEd LINE L1 2525 2746 -3794 1931 138 31 0 chr9 118423439 118423728 -23847716 - AluSx SINE Alu -14 298 1 829 231 41 53 chr9 118424019 118424262 -23847182 - MIR SINE MIR -21 241 2 372 288 95 43 chr9 118424325 118425103 -23846341 + L1MEd LINE L1 3120 3940 -2600 965 202 4 119 chr9 118425249 118425501 -23845943 - MER58A DNA MER1_type -1 223 1 526 250 23 23 chr9 118425509 118425637 -23845807 - MER5B DNA MER1_type 0 178 51 316 333 94 12 chr9 118425701 118425872 -23845572 + MLT1J2 LTR MaLR 266 450 0 1867 146 29 26 chr9 118426113 118426421 -23845023 - AluSx SINE Alu -3 309 1 207 0 0 0 chr9 118426601 118426624 -23844820 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr9 118426818 118426843 -23844601 + AT_rich Low_complexity Low_complexity 1 25 0 1072 270 97 8 chr9 118427537 118427907 -23843537 + MLT1J2 LTR MaLR 38 440 -10 21 0 0 0 chr9 118428979 118429000 -23842444 + AT_rich Low_complexity Low_complexity 1 21 0 2482 65 0 3 chr9 118429028 118429337 -23842107 - AluY SINE Alu -3 308 1 23 0 0 0 chr9 118429337 118429360 -23842084 + AT_rich Low_complexity Low_complexity 1 23 0 1438 223 23 0 chr9 118429753 118430058 -23841386 + AluJo SINE Alu 1 312 0 274 344 70 32 chr9 118430494 118430651 -23840793 + MIR SINE MIR 2 164 -98 343 266 18 18 chr9 118430776 118430885 -23840559 + MIR SINE MIR 31 139 -123 305 164 77 58 chr9 118430974 118431078 -23840366 - MIR SINE MIR -38 224 119 1415 229 3 10 chr9 118431203 118431513 -23839931 - AluJo SINE Alu -4 308 1 348 294 42 21 chr9 118432252 118432395 -23839049 - MIR SINE MIR -108 154 9 292 323 32 0 chr9 118432630 118432723 -23838721 - MIR3 SINE MIR -4 204 109 198 328 0 0 chr9 118433201 118433268 -23838176 + L2 LINE L2 3242 3308 -5 515 272 37 6 chr9 118433748 118433910 -23837534 - MIR3 SINE MIR -21 187 21 189 226 0 0 chr9 118435040 118435093 -23836351 + CT-rich Low_complexity Low_complexity 5 57 0 277 345 65 30 chr9 118435176 118435408 -23836036 + MIR SINE MIR 17 256 -6 300 286 104 66 chr9 118435626 118435808 -23835636 + MIR SINE MIR 48 236 -26 194 141 99 113 chr9 118437315 118437386 -23834058 - L2 LINE L2 0 3272 3203 305 257 139 0 chr9 118437412 118437513 -23833931 - L2 LINE L2 0 3272 3158 336 340 82 6 chr9 118437848 118438007 -23833437 - MIR SINE MIR -71 191 21 303 356 16 8 chr9 118438747 118438943 -23832501 + MIR SINE MIR 20 262 0 334 320 81 41 chr9 118439950 118440122 -23831322 - MIR3 SINE MIR -13 195 17 368 297 135 31 chr9 118440175 118440404 -23831040 - MIR SINE MIR -2 260 8 234 267 17 0 chr9 118440546 118440606 -23830838 - MIR SINE MIR -153 109 49 222 326 0 34 chr9 118440673 118440762 -23830682 + MIR SINE MIR 61 146 -62 659 242 22 60 chr9 118441310 118441492 -23829952 + MER5B DNA MER1_type 4 178 0 340 256 238 30 chr9 118441684 118441848 -23829596 + MIR SINE MIR 59 256 -6 499 182 16 0 chr9 118441890 118442011 -23829433 + GA-rich Low_complexity Low_complexity 2 124 0 541 379 58 14 chr9 118442027 118442444 -23829000 + L2 LINE L2 2449 2883 -431 348 368 24 59 chr9 118442501 118442789 -23828655 + L2 LINE L2 2914 3191 -81 315 71 0 0 chr9 118442803 118442845 -23828599 + (CA)n Simple_repeat Simple_repeat 1 42 0 189 283 17 17 chr9 118443580 118443640 -23827804 - MIR3 SINE MIR -3 205 146 559 245 50 55 chr9 118443743 118443943 -23827501 + MLT1E1 LTR MaLR 1 199 -425 2071 137 0 13 chr9 118443946 118444333 -23827111 - AluSx SINE Alu 0 383 1 1000 242 155 17 chr9 118444334 118444689 -23826755 + MLT1E1 LTR MaLR 241 644 -10 766 340 30 26 chr9 118444740 118445202 -23826242 + MLT1K LTR MaLR 125 588 0 684 308 11 15 chr9 118445409 118445672 -23825772 - MIR SINE MIR 0 262 1 531 331 0 0 chr9 118445950 118446083 -23825361 + MIR SINE MIR 19 151 -57 269 222 0 0 chr9 118446342 118446405 -23825039 - MIR SINE MIR -110 152 90 2271 178 65 6 chr9 118446712 118447224 -23824220 - L1MC3 LINE L1 -6 7779 7238 1352 193 69 43 chr9 118447511 118447859 -23823585 - L1MA9 LINE L1 -385 5915 5559 1801 129 49 36 chr9 118447860 118448225 -23823219 + L1MA9 LINE L1 5939 6308 -4 282 138 0 0 chr9 118448482 118448540 -23822904 + (TGAA)n Simple_repeat Simple_repeat 1 58 0 311 261 174 9 chr9 118448913 118449028 -23822416 - MIR SINE MIR -105 157 24 370 314 58 0 chr9 118450380 118450501 -23820943 - MIR SINE MIR -15 247 120 251 356 69 20 chr9 118451685 118451786 -23819658 + L2 LINE L2 3148 3253 -19 1373 184 20 62 chr9 118451797 118451963 -23819481 - AluJb SINE Alu -21 291 142 2558 66 0 0 chr9 118451963 118452268 -23819176 - AluY SINE Alu -6 305 1 1373 184 20 62 chr9 118452268 118452405 -23819039 - AluJb SINE Alu -170 142 1 289 253 83 81 chr9 118454385 118454528 -23816916 - MIR3 SINE MIR -81 127 4 699 90 0 0 chr9 118454732 118454832 -23816612 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 406 346 7 26 chr9 118455187 118455340 -23816104 - MIR3 SINE MIR -15 193 44 767 126 0 0 chr9 118455685 118455796 -23815648 + FLAM_C SINE Alu 1 111 -32 1528 151 0 0 chr9 118455803 118456021 -23815423 - AluSg/x SINE Alu -16 296 79 21 0 0 0 chr9 118456023 118456044 -23815400 + AT_rich Low_complexity Low_complexity 1 21 0 2645 101 0 0 chr9 118456494 118456849 -23814595 - THE1A LTR MaLR 0 355 1 11540 97 8 4 chr9 118456849 118458423 -23813021 - THE1A-int LTR MaLR 0 1580 1 2674 90 3 3 chr9 118458423 118458778 -23812666 - THE1A LTR MaLR 0 355 1 2003 122 50 44 chr9 118459494 118459856 -23811588 - THE1B LTR MaLR 0 364 1 335 367 37 47 chr9 118459910 118460179 -23811265 - L2 LINE L2 -144 3128 2861 2498 243 4 13 chr9 118460179 118460726 -23810718 + MLT1F LTR MaLR 1 542 0 335 367 37 47 chr9 118460726 118460883 -23810561 - L2 LINE L2 -411 2861 2704 351 242 180 23 chr9 118461546 118461674 -23809770 - MER5A DNA MER1_type 0 189 42 399 305 85 23 chr9 118461756 118461933 -23809511 - L3 LINE CR1 -53 1524 1337 246 62 0 0 chr9 118462063 118462095 -23809349 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 264 351 32 11 chr9 118462501 118462595 -23808849 + MIR3 SINE MIR 4 99 -109 197 290 80 65 chr9 118463632 118463770 -23807674 - MIR SINE MIR -106 156 17 209 256 58 58 chr9 118463773 118463859 -23807585 + MIR SINE MIR 60 145 -117 414 0 0 0 chr9 118463999 118464045 -23807399 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 312 194 97 54 chr9 118464438 118464531 -23806913 - MIR3 SINE MIR -20 188 92 183 80 0 0 chr9 118464902 118464927 -23806517 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr9 118465255 118465285 -23806159 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr9 118466749 118466790 -23804654 + AT_rich Low_complexity Low_complexity 1 41 0 268 293 9 57 chr9 118466912 118467018 -23804426 + MIR SINE MIR 57 157 -105 210 71 0 0 chr9 118467537 118467565 -23803879 + (T)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr9 118467703 118467729 -23803715 + AT_rich Low_complexity Low_complexity 1 26 0 305 279 13 13 chr9 118467789 118467868 -23803576 + L2 LINE L2 3188 3266 -6 254 265 26 34 chr9 118467982 118468099 -23803345 + GA-rich Low_complexity Low_complexity 4 119 0 182 128 26 0 chr9 118468335 118468374 -23803070 + (CA)n Simple_repeat Simple_repeat 1 40 0 313 305 35 89 chr9 118468540 118468743 -23802701 + MIR3 SINE MIR 5 196 -12 231 271 62 52 chr9 118468836 118468932 -23802512 - MIR SINE MIR -48 214 118 184 400 61 0 chr9 118469171 118469286 -23802158 + MIR SINE MIR 28 149 -59 564 303 11 6 chr9 118469346 118469524 -23801920 + MIR SINE MIR 48 226 -36 2189 117 3 0 chr9 118469623 118469921 -23801523 + AluSp SINE Alu 1 299 -14 2185 119 7 0 chr9 118469921 118470216 -23801228 + AluSx SINE Alu 3 299 -13 185 297 27 0 chr9 118470801 118470875 -23800569 - L2 LINE L2 -673 2641 2566 593 359 29 0 chr9 118471569 118471775 -23799669 - MIR SINE MIR -2 260 49 218 176 176 65 chr9 118471843 118471951 -23799493 - MIR SINE MIR -92 170 51 2149 224 25 23 chr9 118472041 118472647 -23798797 - L1MC4a LINE L1 -32 7776 7170 293 322 40 0 chr9 118473623 118473772 -23797672 + (CACCAT)n Simple_repeat Simple_repeat 4 158 0 233 301 203 0 chr9 118473886 118474009 -23797435 - MIR SINE MIR -44 218 71 252 227 55 36 chr9 118474018 118474128 -23797316 - MIR3 SINE MIR -5 203 92 686 173 0 7 chr9 118475436 118475575 -23795869 + GA-rich Low_complexity Low_complexity 4 141 0 220 303 61 92 chr9 118475706 118476023 -23795421 - L2 LINE L2 -199 3073 2760 185 296 0 0 chr9 118476198 118476242 -23795202 + MIR SINE MIR 103 146 -62 417 266 14 77 chr9 118476470 118476613 -23794831 - MIR3 SINE MIR -60 148 15 388 151 0 12 chr9 118477282 118477368 -23794076 - L1PB4 LINE L1 0 6156 6072 2094 20 0 0 chr9 118477368 118477616 -23793828 - L1P LINE L1 -1815 4331 4084 5860 28 1 1 chr9 118477616 118478304 -23793140 + L1PA4 LINE L1 5465 6154 -1 4933 144 10 12 chr9 118478327 118479415 -23792029 - L1PB4 LINE L1 -69 6087 5005 263 308 66 0 chr9 118479910 118480001 -23791443 + L2 LINE L2 3172 3268 -4 292 293 49 12 chr9 118480895 118480977 -23790467 + MIR SINE MIR 63 147 -61 205 276 0 66 chr9 118481362 118481438 -23790006 + GA-rich Low_complexity Low_complexity 2 72 0 297 338 38 52 chr9 118481594 118481767 -23789677 - MIR SINE MIR -56 206 38 428 330 47 11 chr9 118482016 118482207 -23789237 + MIR SINE MIR 11 208 -54 222 283 20 50 chr9 118482882 118482981 -23788463 - MIR SINE MIR -26 236 141 1116 170 134 25 chr9 118483165 118483234 -23788210 + MLT1E2 LTR MaLR 1 61 -565 1896 182 11 21 chr9 118483234 118483613 -23787831 + THE1C LTR MaLR 1 375 0 1116 170 134 25 chr9 118483613 118483819 -23787625 + MLT1E2 LTR MaLR 61 306 -320 437 343 56 20 chr9 118484006 118484204 -23787240 - L3 LINE CR1 -106 1471 1267 358 237 321 0 chr9 118484269 118484400 -23787044 + MER5A DNA MER1_type 8 180 -9 237 83 17 33 chr9 118484423 118484483 -23786961 + (CAAAA)n Simple_repeat Simple_repeat 3 61 0 2323 119 34 8 chr9 118484519 118484872 -23786572 - THE1B LTR MaLR 0 364 3 1370 178 0 119 chr9 118485841 118486184 -23785260 - AluJo SINE Alu 0 302 1 285 305 107 43 chr9 118486717 118486950 -23784494 - MIR SINE MIR 0 262 15 201 350 147 17 chr9 118487484 118487661 -23783783 + MIR SINE MIR 34 233 -29 208 294 0 0 chr9 118488347 118488398 -23783046 + L2 LINE L2 3258 3308 -5 194 314 8 116 chr9 118488394 118488467 -23782977 - MIR SINE MIR -140 122 65 * 461 281 0 0 chr9 118488467 118488581 -23782863 + MER81 DNA DNA 1 114 0 194 314 8 116 chr9 118488581 118488628 -23782816 - MIR SINE MIR -197 65 15 642 185 8 0 chr9 118488842 118488961 -23782483 + MLT1L LTR MaLR 155 274 -341 427 296 59 0 chr9 118489075 118489210 -23782234 + MLT1L LTR MaLR 424 566 -49 203 377 130 14 chr9 118489271 118489478 -23781966 - L2 LINE L2 -172 3100 2870 187 275 0 0 chr9 118489698 118489738 -23781706 + MER5B DNA MER1_type 4 43 -135 23 0 0 0 chr9 118489862 118489885 -23781559 + AT_rich Low_complexity Low_complexity 1 23 0 466 306 55 27 chr9 118490419 118490602 -23780842 - MER5A DNA MER1_type 0 189 2 258 266 73 46 chr9 118490665 118490774 -23780670 + MIR SINE MIR 49 160 -102 405 352 96 35 chr9 118491484 118491882 -23779562 + L2 LINE L2 2362 2783 -531 772 205 87 0 chr9 118491907 118492092 -23779352 - MER3 DNA MER1_type -3 206 6 231 350 0 7 chr9 118492300 118492437 -23779007 + L1ME2 LINE L1 5688 5823 -1985 1413 239 21 16 chr9 118492469 118492855 -23778589 + L1ME2 LINE L1 5778 6327 -7 21 36 0 0 chr9 118492845 118492873 -23778571 + AT_rich Low_complexity Low_complexity 1 28 0 * 332 254 86 105 chr9 118493332 118493541 -23777903 + MLT1K LTR MaLR 378 582 -6 686 234 83 105 chr9 118493615 118494196 -23777248 - L1MC5 LINE L1 -51 7910 7343 1595 86 0 5 chr9 118494488 118494709 -23776735 - L1PA13 LINE L1 -12 6151 5932 374 74 0 37 chr9 118494726 118494780 -23776664 + L1PA13 LINE L1 5899 5950 -211 997 230 46 106 chr9 118494786 118495465 -23775979 - L1MC4 LINE L1 -740 7221 6620 318 282 73 48 chr9 118495751 118495957 -23775487 - L1MC4a LINE L1 -1541 6267 6057 459 0 0 0 chr9 118496761 118496812 -23774632 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 430 316 36 16 chr9 118497704 118497897 -23773547 + MIR3 SINE MIR 6 202 -6 29 0 0 0 chr9 118498370 118498399 -23773045 + AT_rich Low_complexity Low_complexity 1 29 0 389 247 34 0 chr9 118498955 118499044 -23772400 + MER5A DNA MER1_type 10 101 -88 355 316 65 7 chr9 118499567 118499706 -23771738 + MIR SINE MIR 111 257 -5 22 35 0 0 chr9 118499898 118499927 -23771517 + AT_rich Low_complexity Low_complexity 1 29 0 278 289 114 9 chr9 118501026 118501140 -23770304 + MIR SINE MIR 24 149 -59 384 241 310 11 chr9 118501467 118501662 -23769782 + MLT1L LTR MaLR 268 453 -58 1473 214 36 0 chr9 118501781 118502112 -23769332 - MER2 DNA MER2_type -1 343 1 394 283 0 9 chr9 118502333 118502439 -23769005 + MIR SINE MIR 47 151 -111 184 366 69 0 chr9 118502909 118503010 -23768434 + MIR SINE MIR 37 144 -64 1616 219 76 21 chr9 118503429 118503697 -23767747 - MLT1C LTR MaLR -1 466 165 2282 126 19 13 chr9 118503697 118504069 -23767375 - THE1C LTR MaLR 0 375 2 1616 219 76 21 chr9 118504069 118504220 -23767224 - MLT1C LTR MaLR -302 165 24 849 101 40 0 chr9 118504491 118504640 -23766804 + GA-rich Low_complexity Low_complexity 2 156 0 403 216 59 0 chr9 118505285 118505387 -23766057 - MER45C DNA AcHobo -44 909 802 1323 157 43 4 chr9 118505392 118505825 -23765619 - LTR54 LTR ERV1 0 510 1 * 1346 311 91 46 chr9 118505825 118506580 -23764864 - MER45C DNA AcHobo -163 790 1 1984 108 0 51 chr9 118507532 118507846 -23763598 + AluY SINE Alu 1 298 -13 21 43 0 0 chr9 118507846 118507869 -23763575 + AT_rich Low_complexity Low_complexity 1 23 0 1898 164 0 7 chr9 118507906 118508211 -23763233 - AluSx SINE Alu -9 303 1 632 292 98 44 chr9 118508982 118509413 -23762031 - L2 LINE L2 -66 3247 2777 761 122 61 0 chr9 118509455 118509570 -23761874 - AluSc SINE Alu -16 293 172 471 308 112 33 chr9 118509587 118509798 -23761646 - L2 LINE L2 -610 2704 2460 1549 176 3 62 chr9 118509798 118510122 -23761322 + AluJo SINE Alu 1 305 -7 471 308 112 33 chr9 118510122 118510215 -23761229 - L2 LINE L2 -854 2460 2376 372 361 26 16 chr9 118510474 118510665 -23760779 - MIR SINE MIR -50 212 20 503 323 65 43 chr9 118511426 118511854 -23759590 + L2 LINE L2 2607 3057 -256 1121 229 93 41 chr9 118511890 118512314 -23759130 + MLT2B1 LTR ERVL 3 534 -20 414 107 24 24 chr9 118512319 118512403 -23759041 + CT-rich Low_complexity Low_complexity 1 84 0 1550 166 40 24 chr9 118512419 118512715 -23758729 - MER2 DNA MER2_type -41 304 4 243 139 0 0 chr9 118512719 118512755 -23758689 + MLT2D LTR ERVL 377 412 -2 1809 113 0 4 chr9 118512815 118513062 -23758382 + AluSx SINE Alu 21 266 -46 30 27 0 0 chr9 118513063 118513100 -23758344 + AT_rich Low_complexity Low_complexity 1 37 0 308 236 36 36 chr9 118513161 118513271 -23758173 - MLT1J2 LTR MaLR -78 372 263 3794 231 19 7 chr9 118513423 118514388 -23757056 - L1MA9 LINE L1 -157 6155 5180 3761 264 56 30 chr9 118514389 118515586 -23755858 + HERVL-D LTR ERVL 25 1260 -4394 3007 92 22 22 chr9 118515586 118516030 -23755414 - MLT2A1 LTR ERVL 0 444 1 3761 264 56 30 chr9 118516030 118516129 -23755315 + HERVL-D LTR ERVL 1260 1355 -4299 * 8267 160 22 11 chr9 118516125 118517560 -23753884 + ERVL-B1 LTR ERVL 4312 5762 -2 760 187 88 6 chr9 118517407 118517578 -23753866 + Ricksha DNA DNA 185 369 -2877 * 943 181 24 0 chr9 118517588 118517754 -23753690 - AluJ SINE Alu -11 301 132 603 133 17 8 chr9 118517764 118517884 -23753560 + CT-rich Low_complexity Low_complexity 1 121 0 597 216 0 8 chr9 118517884 118518009 -23753435 - AluJ SINE Alu -177 125 2 1228 245 4 101 chr9 118518012 118518477 -23752967 + MLT2B1 LTR ERVL 90 509 -11 23 33 0 0 chr9 118519155 118519185 -23752259 + AT_rich Low_complexity Low_complexity 1 30 0 5614 248 58 39 chr9 118519194 118522243 -23749201 - L1MEc LINE L1 -1541 4674 1576 776 164 0 50 chr9 118522251 118522391 -23749053 - AluJ SINE Alu -169 133 1 30 0 0 0 chr9 118522396 118522426 -23749018 + AT_rich Low_complexity Low_complexity 1 30 0 2754 280 35 23 chr9 118522472 118523368 -23748076 - L1MEc LINE L1 -5461 935 30 314 323 82 55 chr9 118523589 118523880 -23747564 - L3 LINE CR1 -607 970 672 21 82 0 0 chr9 118524489 118524538 -23746906 + AT_rich Low_complexity Low_complexity 1 49 0 303 373 47 0 chr9 118524830 118524999 -23746445 - MIR SINE MIR -38 224 48 403 314 44 25 chr9 118525199 118525358 -23746086 + MER5B DNA MER1_type 17 178 0 383 364 111 53 chr9 118525373 118526014 -23745430 - L2 LINE L2 -438 2876 2199 285 98 0 0 chr9 118526032 118526073 -23745371 + (TGG)n Simple_repeat Simple_repeat 1 41 0 1593 181 16 26 chr9 118526087 118526396 -23745048 - AluJo SINE Alu 0 312 7 218 349 72 0 chr9 118527056 118527139 -23744305 - MIR3 SINE MIR -30 178 90 28 61 0 0 chr9 118528370 118528419 -23743025 + AT_rich Low_complexity Low_complexity 1 49 0 183 261 174 14 chr9 118528591 118528660 -23742784 + L2 LINE L2 3179 3258 -14 1166 251 75 62 chr9 118529025 118529586 -23741858 + MLT1L LTR MaLR 48 615 0 231 376 60 0 chr9 118530186 118530303 -23741141 - L3 LINE CR1 -83 1494 1371 912 206 39 0 chr9 118530410 118530590 -23740854 + MER20 DNA MER1_type 33 219 0 2172 117 10 0 chr9 118531064 118531373 -23740071 - AluSx SINE Alu 0 312 1 339 318 52 58 chr9 118531812 118531966 -23739478 + MIR3 SINE MIR 32 184 -24 184 318 118 12 chr9 118532366 118532451 -23738993 + MIR3 SINE MIR 6 99 -109 21 0 0 0 chr9 118532549 118532570 -23738874 + AT_rich Low_complexity Low_complexity 1 21 0 475 274 75 35 chr9 118532602 118532828 -23738616 - MLT1K LTR MaLR -8 580 346 280 376 37 12 chr9 118533409 118533571 -23737873 - MIR3 SINE MIR -9 199 34 214 376 47 40 chr9 118533562 118533963 -23737481 + L2 LINE L2 2641 3046 -226 * 256 279 58 10 chr9 118534375 118534479 -23736965 + MER117 DNA MER1_type 75 183 -14 474 18 0 0 chr9 118535415 118535470 -23735974 + (TG)n Simple_repeat Simple_repeat 2 56 0 2159 76 7 0 chr9 118535688 118535965 -23735479 + AluSp SINE Alu 1 279 -34 221 180 20 0 chr9 118535965 118536015 -23735429 + GA-rich Low_complexity Low_complexity 2 52 0 401 302 52 52 chr9 118536397 118536645 -23734799 - L2 LINE L2 -621 2693 2446 1830 141 26 3 chr9 118536759 118537071 -23734373 + L1MA4 LINE L1 5976 6294 -6 2846 249 75 77 chr9 118538012 118540179 -23731265 + L1MEc LINE L1 1887 3993 -2222 4836 41 0 2 chr9 118540179 118540754 -23730690 + L1PA5 LINE L1 5563 6145 -9 2846 249 75 77 chr9 118540754 118541783 -23729661 + L1MEc LINE L1 3993 5022 -1193 * 3499 236 32 10 chr9 118541774 118542707 -23728737 + L1MB5 LINE L1 5280 6231 -12 1819 236 76 26 chr9 118542734 118543432 -23728012 + L1ME1 LINE L1 4328 5060 -1086 4377 100 36 9 chr9 118543556 118543900 -23727544 - L1PB1 LINE L1 -1 6150 5817 396 71 0 0 chr9 118543900 118543956 -23727488 + (TG)n Simple_repeat Simple_repeat 2 57 0 4377 100 36 9 chr9 118543956 118544272 -23727172 - L1PB1 LINE L1 -334 5817 5472 9694 61 1 0 chr9 118544284 118545523 -23725921 - L1PA6 LINE L1 -1784 4362 3123 7987 49 0 4 chr9 118545523 118547318 -23724126 + L1PA6 LINE L1 4367 6154 0 2407 187 15 6 chr9 118547319 118548024 -23723420 - L1PB1 LINE L1 -686 5465 4751 453 267 14 42 chr9 118548020 118548237 -23723207 + L1ME1 LINE L1 5050 5260 -886 * 273 243 0 0 chr9 118548237 118548307 -23723137 + (TA)n Simple_repeat Simple_repeat 1 70 0 2010 258 32 10 chr9 118548358 118548955 -23722489 + L1ME1 LINE L1 5365 5974 -192 467 108 0 36 chr9 118549026 118549109 -23722335 - AluSg/x SINE Alu -41 271 192 1549 95 5 5 chr9 118549113 118549324 -23722120 - AluSx SINE Alu -93 219 9 433 200 1 0 chr9 118549336 118549425 -23722019 + L1ME1 LINE L1 6051 6140 -30 325 58 39 0 chr9 118550502 118550554 -23720890 + (TC)n Simple_repeat Simple_repeat 1 54 0 517 281 83 68 chr9 118550568 118550795 -23720649 - MLT1H LTR MaLR -259 290 57 3568 98 14 0 chr9 118550795 118551295 -23720149 - MER84 LTR ERV1 0 507 1 517 281 83 68 chr9 118551295 118551345 -23720099 - MLT1H LTR MaLR -492 57 9 220 288 85 10 chr9 118551898 118552022 -23719422 - MIR SINE MIR -51 157 22 1992 66 8 12 chr9 118552082 118552339 -23719105 - AluY SINE Alu -1 310 55 412 299 39 24 chr9 118552976 118553103 -23718341 + MIR SINE MIR 17 145 -63 280 303 34 11 chr9 118553190 118553279 -23718165 + L3 LINE CR1 1258 1348 -229 1058 315 57 23 chr9 118553386 118553910 -23717534 - L2 LINE L2 -567 2747 2206 205 284 176 14 chr9 118553911 118554059 -23717385 - L2 LINE L2 -226 3046 2875 1347 245 183 37 chr9 118554683 118555229 -23716215 - MLT1E2 LTR MaLR 0 626 1 383 302 35 16 chr9 118555397 118555570 -23715874 + MIR SINE MIR 15 195 -64 305 270 20 20 chr9 118555632 118555732 -23715712 - MIR SINE MIR -60 148 49 2321 68 0 0 chr9 118556431 118556710 -23714734 + AluY SINE Alu 1 279 -32 288 0 0 0 chr9 118556725 118556757 -23714687 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1066 163 31 0 chr9 118557404 118557600 -23713844 - L1MA9 LINE L1 -507 5805 5604 * 1699 196 34 70 chr9 118557588 118558057 -23713387 + L1MA9 LINE L1 5823 6274 -38 465 366 75 0 chr9 118558276 118558437 -23713007 + MER91A DNA MER1_type 4 176 -20 192 182 34 0 chr9 118559056 118559144 -23712300 + (TA)n Simple_repeat Simple_repeat 1 91 0 297 0 0 0 chr9 118559176 118559209 -23712235 + (TG)n Simple_repeat Simple_repeat 2 34 0 693 186 0 90 chr9 118559213 118559369 -23712075 - MLT1D LTR MaLR -363 142 1 257 106 0 21 chr9 118559383 118559430 -23712014 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr9 118559457 118559480 -23711964 + AT_rich Low_complexity Low_complexity 1 23 0 1973 196 50 77 chr9 118559627 118560146 -23711298 - MLT1D LTR MaLR 0 505 1 640 209 37 18 chr9 118560214 118560377 -23711067 + MIR SINE MIR 85 250 -12 227 232 74 11 chr9 118560587 118560682 -23710762 + L1ME4a LINE L1 6020 6120 -1 188 254 0 14 chr9 118560701 118560772 -23710672 + (TA)n Simple_repeat Simple_repeat 1 70 0 25919 136 10 17 chr9 118561502 118567927 -23703517 + L1PA8A LINE L1 2 6444 -2 326 278 89 41 chr9 118567952 118568121 -23703323 + MIR SINE MIR 49 225 -37 * 512 327 94 9 chr9 118568102 118568325 -23703119 + MIR SINE MIR 17 258 -4 182 234 21 0 chr9 118569075 118569122 -23702322 + MIR SINE MIR 102 149 -113 236 296 15 22 chr9 118569152 118569287 -23702157 + CT-rich Low_complexity Low_complexity 2 135 0 181 265 59 44 chr9 118569711 118569779 -23701665 - L2 LINE L2 0 3313 3245 642 317 57 13 chr9 118570851 118571081 -23700363 - MIR SINE MIR 0 262 23 256 24 24 24 chr9 118572012 118572054 -23699390 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 400 70 0 18 chr9 118572333 118572390 -23699054 + U2 snRNA snRNA 1 56 -132 197 302 0 16 chr9 118572462 118572525 -23698919 + MIR SINE MIR 69 130 -132 492 308 81 18 chr9 118572586 118572807 -23698637 - LTR16A1 LTR ERVL -2 455 221 3555 159 32 31 chr9 118572807 118573517 -23697927 - L1MA6 LINE L1 -74 6226 5516 938 191 0 6 chr9 118573517 118573679 -23697765 + FRAM SINE Alu 1 158 -18 3318 157 30 26 chr9 118573699 118574541 -23696903 - L1MA6 LINE L1 -743 5403 4679 288 236 24 57 chr9 118574482 118574605 -23696839 + L1MB7 LINE L1 6057 6175 -9 * 559 340 19 19 chr9 118574605 118574814 -23696630 + L1MEd LINE L1 572 780 -5339 535 226 24 42 chr9 118574833 118575001 -23696443 + MIR SINE MIR 98 262 0 23 54 0 0 chr9 118575340 118575377 -23696067 + AT_rich Low_complexity Low_complexity 1 37 0 281 355 16 0 chr9 118575570 118575691 -23695753 - L1MEd LINE L1 -5749 370 248 236 309 66 66 chr9 118576306 118576458 -23694986 + L2 LINE L2 3121 3272 0 211 229 49 8 chr9 118576673 118576776 -23694668 + (TA)n Simple_repeat Simple_repeat 2 112 -16 303 28 0 0 chr9 118576776 118576812 -23694632 + (TG)n Simple_repeat Simple_repeat 2 37 0 211 229 49 8 chr9 118576812 118576830 -23694614 + (TA)n Simple_repeat Simple_repeat 112 128 0 297 275 301 10 chr9 118576876 118577069 -23694375 + MIR SINE MIR 1 249 -13 211 388 78 0 chr9 118577869 118577972 -23693472 + MIR SINE MIR 64 174 -88 1072 170 10 5 chr9 118578404 118578458 -23692986 - MLT2C2 LTR ERVL -257 207 155 207 0 0 0 chr9 118578458 118578481 -23692963 + (CA)n Simple_repeat Simple_repeat 2 24 0 1072 170 10 5 chr9 118578481 118578632 -23692812 - MLT2C2 LTR ERVL -309 155 1 250 332 106 10 chr9 118578659 118578858 -23692586 + L3 LINE CR1 1187 1404 -173 289 289 60 0 chr9 118579437 118579520 -23691924 + MIR SINE MIR 61 148 -114 2442 90 3 0 chr9 118579814 118580126 -23691318 + AluSp SINE Alu 1 313 0 379 350 119 9 chr9 118580864 118581090 -23690354 - MIR SINE MIR 0 262 12 352 326 73 41 chr9 118581098 118581316 -23690128 + MIR SINE MIR 26 250 -12 1626 229 112 47 chr9 118581828 118582491 -23688953 - MER50 LTR ERV1 -19 715 10 1206 230 119 60 chr9 118582659 118583094 -23688350 + MLT2B1 LTR ERVL 1 461 -59 21 0 0 0 chr9 118583750 118583771 -23687673 + AT_rich Low_complexity Low_complexity 1 21 0 1230 204 99 24 chr9 118585147 118585481 -23685963 - MLT1B LTR MaLR 0 390 32 432 289 61 45 chr9 118586234 118586468 -23684976 - MIR SINE MIR -5 257 23 571 181 0 0 chr9 118586888 118587005 -23684439 + L1PB4 LINE L1 6050 6166 0 3224 242 97 89 chr9 118587813 118589873 -23681571 + L1MC4a LINE L1 5900 7808 0 330 132 0 0 chr9 118590600 118590653 -23680791 + (CA)n Simple_repeat Simple_repeat 1 53 0 523 53 67 0 chr9 118591025 118591100 -23680344 - L1PA13 LINE L1 -6 6157 6078 264 333 12 0 chr9 118592171 118592252 -23679192 + MIR SINE MIR 3 84 -178 296 95 0 0 chr9 118592298 118592340 -23679104 - MADE1 DNA Mariner -38 42 1 186 284 30 0 chr9 118592340 118592407 -23679037 + MIR SINE MIR 156 224 -38 24 0 0 0 chr9 118592529 118592553 -23678891 + AT_rich Low_complexity Low_complexity 1 24 0 2006 139 3 7 chr9 118593378 118593672 -23677772 + AluSx SINE Alu 1 293 -19 195 293 26 103 chr9 118594897 118595013 -23676431 - L2 LINE L2 0 3313 3207 335 250 50 0 chr9 118595937 118596017 -23675427 + MER91C DNA MER1_type 39 122 -18 380 356 85 29 chr9 118596924 118597334 -23674110 - L2 LINE L2 -48 3265 2833 424 353 39 23 chr9 118597419 118597677 -23673767 - L2 LINE L2 -727 2587 2326 460 293 0 58 chr9 118599163 118599354 -23672090 + MLT1K LTR MaLR 401 580 -8 22 35 0 0 chr9 118600329 118600358 -23671086 + AT_rich Low_complexity Low_complexity 1 29 0 468 298 146 19 chr9 118600406 118600611 -23670833 - MIR SINE MIR -12 250 20 186 292 46 15 chr9 118600613 118600678 -23670766 - MIR SINE MIR -79 183 117 1359 210 68 60 chr9 118600685 118600946 -23670498 - MSTD LTR MaLR -11 385 119 2422 122 8 19 chr9 118600946 118601314 -23670130 + THE1B LTR MaLR 1 364 0 1359 210 68 60 chr9 118601314 118601433 -23670011 - MSTD LTR MaLR -277 119 2 334 331 97 6 chr9 118602390 118602565 -23668879 - MIR SINE MIR -70 192 2 464 370 34 32 chr9 118603448 118603916 -23667528 + MLT1J LTR MaLR 43 511 0 180 385 0 0 chr9 118604126 118604209 -23667235 + MIR SINE MIR 31 113 -149 230 229 98 16 chr9 118605230 118605291 -23666153 - L2 LINE L2 -1 3271 3206 951 293 37 50 chr9 118605590 118605909 -23665535 + MLT1I LTR MaLR 88 390 -19 239 0 32 0 chr9 118605998 118606029 -23665415 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 7591 33 0 0 chr9 118606031 118607153 -23664291 - L1PA3 LINE L1 -5 6150 5029 6024 14 0 0 chr9 118607153 118607850 -23663594 + L1PA3 LINE L1 4319 5015 -1131 484 278 145 10 chr9 118608752 118608948 -23662496 + MIR SINE MIR 35 256 -6 428 321 112 22 chr9 118609220 118609497 -23661947 + L3 LINE CR1 1233 1534 -43 253 358 46 0 chr9 118609900 118610009 -23661435 + MIR SINE MIR 25 138 -70 250 323 21 0 chr9 118610035 118610131 -23661313 + MIR3 SINE MIR 101 198 -10 277 364 36 0 chr9 118610145 118610255 -23661189 - L2 LINE L2 -12 3260 3147 2055 118 0 21 chr9 118610499 118610814 -23660630 + AluSq SINE Alu 3 311 0 428 250 46 59 chr9 118610846 118610998 -23660446 - MIR SINE MIR 0 262 113 297 330 9 0 chr9 118611018 118611124 -23660320 + MER117 DNA MER1_type 30 136 -61 596 332 12 58 chr9 118611129 118611457 -23659987 - L2 LINE L2 -11 3302 2990 378 320 40 7 chr9 118611650 118611800 -23659644 + MIR SINE MIR 79 233 -29 2243 113 3 0 chr9 118612142 118612443 -23659001 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 118612452 118612475 -23658969 + AT_rich Low_complexity Low_complexity 1 23 0 377 252 89 8 chr9 118612752 118612875 -23658569 - MIR SINE MIR -13 249 117 247 357 57 7 chr9 118612878 118613018 -23658426 - MIR SINE MIR -113 149 3 199 376 0 43 chr9 118613341 118613458 -23657986 + MIR3 SINE MIR 3 114 -94 335 228 60 54 chr9 118613625 118613792 -23657652 - MIR3 SINE MIR -14 194 27 432 0 0 0 chr9 118614318 118614366 -23657078 + (CATAT)n Simple_repeat Simple_repeat 5 52 0 296 319 71 53 chr9 118614450 118614619 -23656825 - MIR SINE MIR -70 192 21 2777 116 14 14 chr9 118614889 118615312 -23656132 + L1PA11 LINE L1 5741 6163 -11 259 271 179 21 chr9 118616226 118616366 -23655078 - MER103 DNA DNA -2 164 3 399 286 111 54 chr9 118616615 118616912 -23654532 - L3 LINE CR1 -120 1457 1144 1840 19 0 0 chr9 118616938 118616970 -23654474 - L1PA4 LINE L1 -265 5890 5859 585 261 65 19 chr9 118616970 118617147 -23654297 - L1MD3 LINE L1 -2137 5858 5664 785 21 0 0 chr9 118617147 118617237 -23654207 + L1PA5 LINE L1 6058 6150 -4 585 261 65 19 chr9 118617237 118617319 -23654125 - L1MD3 LINE L1 -2331 5664 5587 342 409 62 32 chr9 118618195 118618564 -23652880 - L2 LINE L2 -7 3265 2886 664 255 25 6 chr9 118618693 118618850 -23652594 + MER5A DNA MER1_type 30 189 0 2451 117 8 16 chr9 118620066 118620433 -23651011 + THE1B LTR MaLR 1 364 0 9556 114 52 36 chr9 118620435 118621989 -23649455 + THE1B-int LTR MaLR 3 1580 0 2171 109 0 3 chr9 118621989 118622283 -23649161 + THE1B LTR MaLR 1 293 -71 2004 88 32 0 chr9 118622815 118623100 -23648344 + L1PA13 LINE L1 5865 6158 -5 203 257 71 33 chr9 118623301 118623405 -23648039 + MER5B DNA MER1_type 57 176 -13 1657 85 0 0 chr9 118623519 118623743 -23647701 + L1PA8 LINE L1 5948 6171 -1 2268 107 3 0 chr9 118623772 118624072 -23647372 + AluY SINE Alu 1 301 -10 222 37 0 0 chr9 118624165 118624192 -23647252 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 363 44 0 0 chr9 118624773 118624818 -23646626 + (TG)n Simple_repeat Simple_repeat 2 46 0 279 253 253 23 chr9 118625293 118625467 -23645977 - MIR SINE MIR -2 260 47 272 346 0 55 chr9 118625534 118625751 -23645693 + L3 LINE CR1 1278 1562 -15 337 298 48 32 chr9 118626060 118626184 -23645260 + MIR SINE MIR 131 256 -6 895 314 127 10 chr9 118626200 118626601 -23644843 + LTR16A LTR ERVL 3 450 0 278 333 36 8 chr9 118627428 118627594 -23643850 - MIR SINE MIR -11 251 47 201 239 0 0 chr9 118627699 118627745 -23643699 + GA-rich Low_complexity Low_complexity 2 47 0 738 261 31 54 chr9 118629207 118629468 -23641976 + MIR SINE MIR 8 262 0 490 291 0 47 chr9 118629503 118629675 -23641769 - L1PA16 LINE L1 -16 6150 5987 872 191 59 34 chr9 118629784 118629988 -23641456 + MER63A DNA MER1_type 1 209 -1 423 265 15 8 chr9 118630251 118630383 -23641061 - MER103 DNA DNA -33 133 1 826 355 106 43 chr9 118630779 118631865 -23639579 + L2 LINE L2 1218 2420 -894 2573 21 0 0 chr9 118631865 118632152 -23639292 - AluYb8 SINE Alu 0 318 32 826 355 106 43 chr9 118632152 118632512 -23638932 + L2 LINE L2 2420 2756 -558 369 0 0 0 chr9 118632610 118632651 -23638793 + (CA)n Simple_repeat Simple_repeat 2 42 0 275 325 26 0 chr9 118632658 118632735 -23638709 + L2 LINE L2 2980 3058 -214 1622 285 117 80 chr9 118633061 118634232 -23637212 + HAL1 LINE L1 1 1127 -1380 1902 168 0 3 chr9 118634232 118634541 -23636903 + AluJb SINE Alu 1 308 -4 1622 285 117 80 chr9 118634541 118635787 -23635657 + HAL1 LINE L1 1127 2507 0 392 306 57 0 chr9 118636468 118636592 -23634852 + L2 LINE L2 3138 3268 -4 497 385 20 0 chr9 118636701 118636896 -23634548 + MIR SINE MIR 6 204 -58 252 246 313 8 chr9 118637523 118637657 -23633787 + MIR SINE MIR 88 262 0 487 180 170 0 chr9 118638365 118638465 -23632979 - Tigger1 DNA MER2_type -1 2417 2301 16149 26 4 0 chr9 118638465 118640397 -23631047 - L1PA4 LINE L1 -1482 4664 2726 7415 37 3 0 chr9 118640398 118641870 -23629574 + L1PA4 LINE L1 4678 6152 -3 2910 151 39 6 chr9 118641875 118641973 -23629471 - Tigger1 DNA MER2_type -105 2313 2220 1685 189 0 17 chr9 118641973 118642269 -23629175 + AluSq SINE Alu 1 291 -22 2910 151 39 6 chr9 118642269 118642706 -23628738 - Tigger1 DNA MER2_type -198 2220 1760 874 113 0 16 chr9 118642707 118642831 -23628613 + AluSq/x SINE Alu 1 122 -190 315 122 0 0 chr9 118642847 118642896 -23628548 + (TG)n Simple_repeat Simple_repeat 2 50 0 313 296 23 0 chr9 118642902 118642990 -23628454 - L1MC4 LINE L1 -1339 6703 6614 232 282 0 14 chr9 118642992 118643134 -23628310 + (TA)n Simple_repeat Simple_repeat 2 141 0 243 0 0 0 chr9 118643134 118643161 -23628283 + (CA)n Simple_repeat Simple_repeat 2 28 0 869 180 20 7 chr9 118643166 118643316 -23628128 + AluSg/x SINE Alu 134 285 -27 180 0 0 0 chr9 118643316 118643336 -23628108 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 2162 105 6 0 chr9 118643336 118643650 -23627794 - Tigger1 DNA MER2_type -649 1769 1454 1650 187 74 28 chr9 118643653 118644043 -23627401 + L1PA16 LINE L1 5759 6166 0 7853 162 41 9 chr9 118644045 118645448 -23625996 - Tigger1 DNA MER2_type -968 1450 2 565 175 0 0 chr9 118645525 118645628 -23625816 + Ricksha DNA DNA 1 103 -3143 366 125 0 0 chr9 118645633 118645689 -23625755 + ERVL LTR ERVL 5643 5698 -66 385 277 8 8 chr9 118646910 118647040 -23624404 + L1MC4a LINE L1 6443 6572 -1236 681 251 69 20 chr9 118647042 118647245 -23624199 - MLT1G LTR MaLR -2 588 376 514 302 50 18 chr9 118647246 118647468 -23623976 - MLT1G LTR MaLR -342 248 20 216 301 14 0 chr9 118647504 118647577 -23623867 + (TA)n Simple_repeat Simple_repeat 1 74 0 2683 277 35 55 chr9 118647577 118648476 -23622968 + L1MC4 LINE L1 6595 7461 -581 2313 173 21 2 chr9 118648476 118648904 -23622540 + L1MC1 LINE L1 5895 6330 -3 2683 277 35 55 chr9 118648904 118649334 -23622110 + L1MC4 LINE L1 7461 7898 -144 669 189 59 12 chr9 118649398 118649567 -23621877 + MLT1B LTR MaLR 1 177 -213 633 203 235 64 chr9 118649716 118649967 -23621477 + MLT1B LTR MaLR 174 467 0 249 262 0 0 chr9 118649980 118650041 -23621403 + L1MC4 LINE L1 7977 8037 -5 1129 88 5 74 chr9 118650045 118650262 -23621182 + L1MA8 LINE L1 6086 6287 -4 2190 114 13 32 chr9 118650611 118650927 -23620517 + AluSx SINE Alu 1 310 -2 641 299 131 51 chr9 118651291 118651872 -23619572 + L2 LINE L2 2685 3311 -2 3590 189 56 44 chr9 118651885 118652776 -23618668 + L1MD2 LINE L1 5444 6351 -8 299 225 47 8 chr9 118652851 118652980 -23618464 + (TA)n Simple_repeat Simple_repeat 1 134 0 244 288 50 12 chr9 118652987 118653067 -23618377 + MIR SINE MIR 180 262 0 205 301 87 39 chr9 118653074 118653177 -23618267 + L2 LINE L2 3163 3270 -2 387 313 27 20 chr9 118653292 118653439 -23618005 + MIR3 SINE MIR 60 207 -1 2506 65 3 0 chr9 118654394 118654703 -23616741 - AluY SINE Alu -1 310 1 253 355 145 8 chr9 118655677 118655801 -23615643 - MER5A DNA MER1_type -48 141 1 453 278 11 28 chr9 118656465 118656645 -23614799 + (TTCA)n Simple_repeat Simple_repeat 1 177 0 2120 114 7 0 chr9 118656754 118657132 -23614312 - AluSq SINE Alu 0 380 1 247 352 0 38 chr9 118657452 118657557 -23613887 + L2 LINE L2 3172 3272 -41 462 18 0 0 chr9 118658011 118658066 -23613378 + (TG)n Simple_repeat Simple_repeat 2 56 0 231 353 83 23 chr9 118658731 118658864 -23612580 + L2 LINE L2 3089 3229 -43 205 264 33 11 chr9 118658907 118658998 -23612446 + A-rich Low_complexity Low_complexity 2 94 0 217 351 53 11 chr9 118659706 118659800 -23611644 - L2 LINE L2 -19 3294 3197 * 315 338 70 0 chr9 118659794 118659936 -23611508 - MIR SINE MIR -81 181 30 2000 120 150 5 chr9 118661296 118661663 -23609781 + MSTA LTR MaLR 1 420 -8 7375 158 76 40 chr9 118661665 118662150 -23609294 + MSTA-int LTR MaLR 19 485 -1095 2207 125 6 10 chr9 118662150 118662462 -23608982 + AluSx SINE Alu 1 311 -1 7375 158 76 40 chr9 118662462 118663484 -23607960 + MSTA-int LTR MaLR 485 1580 0 2130 147 98 8 chr9 118663488 118663877 -23607567 + MSTA LTR MaLR 5 428 0 209 413 23 12 chr9 118664065 118664237 -23607207 - MER5B DNA MER1_type -1 177 4 4281 189 7 12 chr9 118664781 118666339 -23605105 + L1PA16 LINE L1 4524 6073 -93 36 40 0 0 chr9 118666384 118666434 -23605010 + AT_rich Low_complexity Low_complexity 1 50 0 293 200 0 12 chr9 118666453 118666533 -23604911 + L1PA16 LINE L1 6087 6165 -1 748 176 57 13 chr9 118666661 118666820 -23604624 - MER20 DNA MER1_type -53 166 1 340 399 0 0 chr9 118667096 118667217 -23604227 + L2 LINE L2 3180 3303 -10 216 0 0 0 chr9 118667217 118667241 -23604203 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 340 399 0 0 chr9 118667241 118667252 -23604192 + L2 LINE L2 3302 3312 -1 284 350 76 73 chr9 118667271 118667614 -23603830 - L2 LINE L2 -11 3261 2918 226 359 68 21 chr9 118667711 118667903 -23603541 - L2 LINE L2 -461 2853 2653 2247 120 7 0 chr9 118667979 118668279 -23603165 - AluSx SINE Alu -10 302 1 186 337 11 34 chr9 118669700 118669789 -23601655 + MIR SINE MIR 175 261 -1 198 118 0 0 chr9 118669801 118669835 -23601609 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1694 170 84 14 chr9 118670605 118670952 -23600492 + THE1C LTR MaLR 5 375 0 486 267 49 22 chr9 118672820 118672997 -23598447 + L1MC4a LINE L1 6815 7001 -807 198 103 0 0 chr9 118672997 118673026 -23598418 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 486 267 49 22 chr9 118673026 118673073 -23598371 + L1MC4a LINE L1 7001 7045 -763 1791 201 114 74 chr9 118673108 118673679 -23597765 - MER6A DNA MER2_type -2 603 10 1160 235 61 65 chr9 118673687 118674160 -23597284 - MLT1D LTR MaLR -32 473 3 580 240 86 0 chr9 118674162 118674395 -23597049 + L1MC4 LINE L1 7119 7371 -671 * 698 293 47 42 chr9 118674393 118675007 -23596437 + L1MEc LINE L1 1202 1818 -4578 22 35 0 0 chr9 118675020 118675049 -23596395 + AT_rich Low_complexity Low_complexity 1 29 0 1249 238 53 19 chr9 118675071 118675432 -23596012 + L1MEc LINE L1 59 431 -5965 660 261 9 5 chr9 118675423 118675638 -23595806 + L1M4 LINE L1 4537 4752 -1394 * 1488 91 32 9 chr9 118675904 118676123 -23595321 - MER30 DNA MER1_type 0 230 7 937 143 55 206 chr9 118676309 118676695 -23594749 - MER4C LTR ERV1 -2 463 171 1965 138 3 16 chr9 118676695 118676999 -23594445 + AluSg SINE Alu 1 300 -10 937 143 55 206 chr9 118676999 118677122 -23594322 - MER4C LTR ERV1 -294 171 31 3511 55 0 7 chr9 118677122 118677573 -23593871 - LTR7 LTR ERV1 -2 448 1 2384 64 59 13 chr9 118677573 118677946 -23593498 - HERVH LTR ERV1 0 7713 7324 1352 110 18 9 chr9 118677946 118678164 -23593280 - HERVH LTR ERV1 -1894 5819 5600 4175 129 3 6 chr9 118678165 118678829 -23592615 - HERVH LTR ERV1 -2564 5149 4488 3168 117 0 6 chr9 118678831 118679336 -23592108 - HERVH LTR ERV1 -3720 3993 3492 638 219 7 7 chr9 118679326 118679477 -23591967 - HERVH LTR ERV1 -4423 3290 3140 * 17840 87 28 11 chr9 118679623 118682359 -23589085 - HERVH LTR ERV1 -4931 2782 1 3255 63 16 5 chr9 118682361 118682804 -23588640 - LTR7 LTR ERV1 -2 448 1 316 335 40 6 chr9 118683353 118683526 -23587918 + MIR SINE MIR 65 243 -19 312 220 22 33 chr9 118683951 118684042 -23587402 - MIR3 SINE MIR -37 171 82 302 227 0 15 chr9 118684595 118684661 -23586783 + L2 LINE L2 3208 3272 0 674 268 119 40 chr9 118685705 118685839 -23585605 + L1ME3A LINE L1 5554 5676 -494 1846 120 4 22 chr9 118685839 118686114 -23585330 + AluSx SINE Alu 34 303 -9 674 268 119 40 chr9 118686114 118686356 -23585088 + L1ME3A LINE L1 5676 5960 -210 210 298 114 38 chr9 118686370 118686501 -23584943 + MIR SINE MIR 28 168 -94 246 269 0 39 chr9 118686655 118686759 -23584685 + CT-rich Low_complexity Low_complexity 4 103 0 305 347 85 48 chr9 118687159 118687677 -23583767 + L2 LINE L2 2631 3181 -132 465 84 0 0 chr9 118688446 118688517 -23582927 + (CA)n Simple_repeat Simple_repeat 2 72 0 223 350 25 0 chr9 118688561 118688641 -23582803 + MIR SINE MIR 48 129 -133 2185 132 0 0 chr9 118689515 118689825 -23581619 - AluSg SINE Alu 0 310 1 353 292 21 42 chr9 118689973 118690117 -23581327 - L2 LINE L2 0 3313 3173 254 247 34 0 chr9 118690120 118690209 -23581235 + (TA)n Simple_repeat Simple_repeat 1 92 0 271 193 0 0 chr9 118690378 118690435 -23581009 + L1 LINE L1 4278 4334 -1812 * 1268 121 0 0 chr9 118690429 118690627 -23580817 - L1MA2 LINE L1 -34 6270 6073 4668 189 37 7 chr9 118690644 118692458 -23578986 + L1PA16 LINE L1 4303 6166 0 1515 207 30 85 chr9 118693482 118694009 -23577435 + MLT1D LTR MaLR 6 503 -2 294 339 58 12 chr9 118694220 118694391 -23577053 + MIR SINE MIR 84 262 0 386 329 0 60 chr9 118694694 118694910 -23576534 + MIR SINE MIR 56 258 -4 614 269 159 47 chr9 118694941 118695263 -23576181 - MSTD LTR MaLR -7 389 2 197 33 33 0 chr9 118695354 118695384 -23576060 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 630 183 84 14 chr9 118695422 118695635 -23575809 - MER3 DNA MER1_type 0 2611 2384 411 258 0 0 chr9 118695649 118695738 -23575706 - MER81 DNA DNA -21 93 5 6383 78 3 1 chr9 118695761 118696649 -23574795 - L1PA7 LINE L1 0 6154 5265 6714 76 33 2 chr9 118695763 118697512 -23573932 - L1PA7 LINE L1 0 6154 4370 8290 94 8 1 chr9 118697512 118698691 -23572753 + L1P LINE L1 3138 4325 -1821 652 203 27 0 chr9 118698703 118698851 -23572593 - MER3 DNA MER1_type 0 2386 2235 466 168 112 9 chr9 118698855 118698962 -23572482 - MER3 DNA MER1_type -41 168 51 538 259 59 55 chr9 118700110 118700550 -23570894 + L1MEd LINE L1 1087 1528 -5002 228 276 152 18 chr9 118700893 118701110 -23570334 + L1MEd LINE L1 1795 2040 -4500 255 125 0 0 chr9 118701378 118701418 -23570026 + (A)n Simple_repeat Simple_repeat 1 40 0 295 275 132 27 chr9 118701486 118701744 -23569700 + L1MEd LINE L1 3125 3409 -3131 331 200 35 0 chr9 118701774 118701859 -23569585 + L1PA16 LINE L1 6079 6166 0 417 303 55 28 chr9 118702427 118702717 -23568727 + L1MEd LINE L1 4259 4556 -1984 696 74 0 0 chr9 118702748 118702843 -23568601 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 235 234 11 11 chr9 118703280 118703374 -23568070 + (TG)n Simple_repeat Simple_repeat 1 94 0 242 321 52 41 chr9 118703377 118703741 -23567703 + L1MEd LINE L1 5023 5390 -1150 3823 222 50 32 chr9 118703855 118705579 -23565865 + L1MB7 LINE L1 4427 6175 -9 22 70 0 0 chr9 118705635 118705678 -23565766 + AT_rich Low_complexity Low_complexity 1 43 0 245 291 151 35 chr9 118706001 118706173 -23565271 - MIR SINE MIR -16 246 55 4037 135 30 11 chr9 118706209 118706936 -23564508 + L1MA5A LINE L1 5556 6296 -1 637 73 0 83 chr9 118707051 118707160 -23564284 + L1PA10 LINE L1 6069 6168 0 27 29 0 0 chr9 118707197 118707231 -23564213 + AT_rich Low_complexity Low_complexity 1 34 0 1808 136 7 14 chr9 118707233 118707528 -23563916 - AluSx SINE Alu -19 293 1 21 0 0 0 chr9 118707576 118707597 -23563847 + AT_rich Low_complexity Low_complexity 1 21 0 2115 127 3 3 chr9 118707624 118707923 -23563521 + AluSx SINE Alu 1 299 -13 186 43 0 0 chr9 118708904 118708927 -23562517 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 286 242 15 0 chr9 118709054 118709120 -23562324 - MIR SINE MIR -63 145 87 314 324 38 9 chr9 118709371 118709476 -23561968 + L1M2a LINE L1 2 109 -7059 14800 195 35 14 chr9 118710328 118712238 -23559206 - L1PB1 LINE L1 -4 6863 4995 189 0 0 0 chr9 118712238 118712259 -23559185 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 14800 195 35 14 chr9 118712259 118716249 -23555195 - L1PB1 LINE L1 -1872 4995 874 508 296 5 0 chr9 118716227 118716413 -23555031 - L1PB1 LINE L1 -6669 194 8 * 1752 202 29 19 chr9 118716590 118716967 -23554477 - L1MC3 LINE L1 -181 7604 7224 802 284 136 13 chr9 118717225 118717687 -23553757 - LTR33 LTR ERVL -2 519 1 274 313 206 33 chr9 118717759 118718002 -23553442 - L3 LINE CR1 -105 1472 1188 224 260 90 20 chr9 118718477 118718577 -23552867 - MIR SINE MIR -96 166 60 207 0 0 0 chr9 118719252 118719275 -23552169 + (T)n Simple_repeat Simple_repeat 1 23 0 450 127 0 14 chr9 118719532 118719603 -23551841 + MER5B DNA MER1_type 1 70 -108 2036 132 3 7 chr9 118719723 118720033 -23551411 - AluSc SINE Alu 0 309 1 280 257 218 10 chr9 118720052 118720153 -23551291 - MIR3 SINE MIR -47 161 40 220 316 72 72 chr9 118720638 118720777 -23550667 - MIR3 SINE MIR -49 159 21 418 346 28 28 chr9 118720787 118720998 -23550446 + MIR SINE MIR 20 230 -32 248 299 128 26 chr9 118721898 118722015 -23549429 - MIR3 SINE MIR -33 175 47 202 230 20 0 chr9 118722141 118722191 -23549253 + L2 LINE L2 3164 3204 -68 202 243 100 14 chr9 118722698 118722768 -23548676 + MIR SINE MIR 54 129 -79 22 0 0 0 chr9 118723057 118723079 -23548365 + AT_rich Low_complexity Low_complexity 1 22 0 5160 163 27 0 chr9 118723296 118724221 -23547223 - L1MA4A LINE L1 -3 6300 5351 308 281 156 15 chr9 118724334 118724469 -23546975 - L3 LINE CR1 -344 1233 1080 201 161 0 0 chr9 118725718 118725749 -23545695 + (TATG)n Simple_repeat Simple_repeat 4 34 0 360 270 107 34 chr9 118726064 118726214 -23545230 - MIR SINE MIR -65 143 37 378 289 50 41 chr9 118726777 118726898 -23544546 - MIR3 SINE MIR -25 183 62 207 394 50 43 chr9 118727375 118727652 -23543792 - L2 LINE L2 -337 2977 2699 256 321 18 143 chr9 118728149 118728485 -23542959 + L2 LINE L2 2967 3260 -12 218 222 0 0 chr9 118728496 118728541 -23542903 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 23 54 0 0 chr9 118728820 118728857 -23542587 + AT_rich Low_complexity Low_complexity 1 37 0 324 208 0 0 chr9 118729042 118729143 -23542301 + (CTATT)n Simple_repeat Simple_repeat 2 102 0 185 307 27 27 chr9 118729398 118729473 -23541971 - L2 LINE L2 -264 3008 2934 367 312 35 17 chr9 118730173 118730346 -23541098 + L1MEc LINE L1 82 257 -6139 1540 269 81 72 chr9 118730714 118731971 -23539473 + L1MEc LINE L1 659 1927 -4469 1200 268 57 28 chr9 118732006 118732499 -23538945 + L1MEc LINE L1 2323 2829 -3386 219 288 81 45 chr9 118732603 118732714 -23538730 + MIR3 SINE MIR 53 167 -41 193 243 0 100 chr9 118732748 118732818 -23538626 + L2 LINE L2 3251 3313 0 2025 117 34 0 chr9 118733247 118733538 -23537906 + AluSq SINE Alu 1 301 -12 303 140 0 0 chr9 118733538 118733588 -23537856 + (GA)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr9 118733866 118733894 -23537550 + AT_rich Low_complexity Low_complexity 1 28 0 472 275 0 8 chr9 118733951 118734071 -23537373 - MLT1C LTR MaLR 0 467 349 183 431 28 9 chr9 118734261 118734370 -23537074 - L2 LINE L2 -64 3208 3098 497 309 51 48 chr9 118734619 118734972 -23536472 + L1MCa LINE L1 1367 1720 -4820 610 312 90 37 chr9 118735466 118736086 -23535358 + L1MCa LINE L1 2441 3097 -3443 395 282 37 65 chr9 118736087 118736332 -23535112 - L2 LINE L2 -129 3184 2947 1954 159 30 21 chr9 118736395 118736767 -23534677 + THE1C LTR MaLR 1 375 0 297 290 80 81 chr9 118736772 118737033 -23534411 + L1ME LINE L1 5512 5771 -391 31 88 0 0 chr9 118737129 118737209 -23534235 + AT_rich Low_complexity Low_complexity 1 80 0 282 73 0 0 chr9 118737540 118737581 -23533863 + (TG)n Simple_repeat Simple_repeat 2 42 0 314 240 0 10 chr9 118738565 118738669 -23532775 + CT-rich Low_complexity Low_complexity 1 103 0 23 54 0 0 chr9 118738979 118739016 -23532428 + AT_rich Low_complexity Low_complexity 1 37 0 634 202 0 124 chr9 118739544 118739722 -23531722 + FRAM SINE Alu 1 152 -24 226 318 35 35 chr9 118739724 118739809 -23531635 - L2 LINE L2 -21 3292 3208 311 253 0 13 chr9 118740278 118740357 -23531087 - MIR SINE MIR -66 142 65 229 268 0 24 chr9 118740468 118740550 -23530894 - MIR SINE MIR 0 262 183 439 268 9 18 chr9 118740632 118740744 -23530700 + L2 LINE L2 3188 3298 -15 292 314 0 0 chr9 118741501 118741571 -23529873 - L3 LINE CR1 -5 1572 1503 355 240 80 91 chr9 118741971 118742212 -23529232 - L1ME LINE L1 -691 5475 5255 24 0 0 0 chr9 118742609 118742633 -23528811 + AT_rich Low_complexity Low_complexity 1 24 0 4711 189 24 46 chr9 118742642 118744657 -23526787 - L1MA9 LINE L1 -10 6302 4314 285 337 108 41 chr9 118744766 118744951 -23526493 - MIR SINE MIR -34 174 16 222 37 0 0 chr9 118745251 118745278 -23526166 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1387 302 137 37 chr9 118746126 118746320 -23525124 - L2 LINE L2 -2 3311 3138 834 189 44 5 chr9 118746320 118746526 -23524918 + L1MA4 LINE L1 6085 6298 -2 1387 302 137 37 chr9 118746526 118747530 -23523914 - L2 LINE L2 -175 3138 1987 189 0 0 0 chr9 118748423 118748444 -23523000 + (CAT)n Simple_repeat Simple_repeat 1 21 0 286 346 81 38 chr9 118749341 118749526 -23521918 + MIR3 SINE MIR 6 198 -10 276 308 29 71 chr9 118749593 118749775 -23521669 + MIR SINE MIR 20 194 -14 327 245 53 33 chr9 118750459 118750594 -23520850 - MIR SINE MIR -31 177 40 538 311 116 0 chr9 118751215 118751440 -23520004 - MIR SINE MIR 0 262 12 957 308 111 13 chr9 118752972 118753359 -23518085 + L2 LINE L2 2886 3310 -3 1919 155 3 7 chr9 118753469 118753765 -23517679 + AluSx SINE Alu 2 296 -16 240 377 25 16 chr9 118753997 118754119 -23517325 - MIR SINE MIR -69 139 21 1045 276 66 11 chr9 118754191 118754610 -23516834 + LTR16A LTR ERVL 8 443 -7 893 117 52 7 chr9 118754860 118755014 -23516430 - MSTA LTR MaLR -2 426 266 7624 28 4 0 chr9 118755190 118756435 -23515009 - L1PA3 LINE L1 0 6155 4910 13486 34 0 1 chr9 118756435 118758131 -23513313 + L1PA3 LINE L1 3229 4923 -1223 299 259 82 19 chr9 118758992 118759150 -23512294 - MER117 DNA MER1_type -28 169 2 2316 110 3 0 chr9 118759184 118759493 -23511951 + AluSq SINE Alu 1 310 -3 202 336 131 8 chr9 118760224 118760346 -23511098 - L2 LINE L2 0 3272 3136 1670 179 39 41 chr9 118760420 118760783 -23510661 - MLT1A1 LTR MaLR -3 362 1 296 222 86 12 chr9 118760784 118760865 -23510579 - L2 LINE L2 -32 3281 3195 190 237 0 0 chr9 118761165 118761203 -23510241 - L2 LINE L2 -93 3179 3142 462 88 0 0 chr9 118761993 118762061 -23509383 + (GGGAA)n Simple_repeat Simple_repeat 2 69 0 337 200 0 0 chr9 118762063 118762123 -23509321 + GA-rich Low_complexity Low_complexity 3 62 0 2871 285 94 32 chr9 118762169 118763513 -23507931 + L2 LINE L2 1815 3246 -67 22 35 0 0 chr9 118763525 118763554 -23507890 + AT_rich Low_complexity Low_complexity 1 29 0 582 305 8 23 chr9 118763722 118763960 -23507484 - MIR SINE MIR -3 259 27 231 371 85 52 chr9 118764077 118764465 -23506979 - L2 LINE L2 -1 3271 2871 2068 115 40 43 chr9 118764637 118765011 -23506433 + THE1C LTR MaLR 1 373 -2 406 273 45 34 chr9 118765072 118765248 -23506196 - MER5B DNA MER1_type 0 178 1 364 290 40 0 chr9 118765433 118765533 -23505911 + MIR SINE MIR 141 244 -18 197 300 142 47 chr9 118765549 118765802 -23505642 - L2 LINE L2 -900 2414 2138 247 333 17 25 chr9 118765810 118765930 -23505514 + MIR SINE MIR 98 216 -46 554 323 48 32 chr9 118766456 118766707 -23504737 - MIR SINE MIR -3 259 5 270 56 0 0 chr9 118766735 118766771 -23504673 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2025 98 3 24 chr9 118766773 118767060 -23504384 - AluSg SINE Alu -29 281 1 188 216 0 39 chr9 118767098 118767149 -23504295 - MIR SINE MIR -57 151 103 2289 111 3 0 chr9 118767424 118767731 -23503713 - AluSc SINE Alu -1 308 1 314 307 7 73 chr9 118768143 118768293 -23503151 + MIR SINE MIR 42 181 -81 26 0 0 0 chr9 118768911 118768937 -23502507 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 118769114 118769135 -23502309 + AT_rich Low_complexity Low_complexity 1 21 0 196 294 11 54 chr9 118769164 118769256 -23502188 + MIR3 SINE MIR 109 196 -12 692 250 34 0 chr9 118769891 118770067 -23501377 - MIR SINE MIR -4 258 77 196 270 16 0 chr9 118770261 118770324 -23501120 + L2 LINE L2 2550 2613 -701 256 287 49 57 chr9 118771570 118771692 -23499752 + MIR SINE MIR 68 188 -74 375 119 0 0 chr9 118771839 118771906 -23499538 + (TC)n Simple_repeat Simple_repeat 1 67 0 261 323 40 48 chr9 118771959 118772083 -23499361 + MIR3 SINE MIR 3 125 -83 1008 154 35 75 chr9 118772164 118772391 -23499053 + MER20 DNA MER1_type 1 218 -1 1970 128 29 31 chr9 118772521 118772628 -23498816 - L1MA9 LINE L1 -1 6311 6205 2273 103 12 100 chr9 118772628 118773037 -23498407 + THE1C LTR MaLR 3 375 0 1970 128 29 31 chr9 118773037 118773311 -23498133 - L1MA9 LINE L1 -107 6205 5931 2904 178 35 6 chr9 118773312 118774272 -23497172 + L1MA8 LINE L1 4873 5860 -431 289 319 17 50 chr9 118774420 118774539 -23496905 - MIR SINE MIR -83 179 65 21 0 0 0 chr9 118775120 118775141 -23496303 + AT_rich Low_complexity Low_complexity 1 21 0 344 288 75 87 chr9 118776187 118776576 -23494868 + L2 LINE L2 1487 1870 -1444 277 238 98 63 chr9 118776638 118776781 -23494663 + L2 LINE L2 1846 1993 -1321 4182 204 14 33 chr9 118776802 118778581 -23492863 - L1MB7 LINE L1 -8 6674 4936 25 0 0 0 chr9 118778602 118778627 -23492817 + AT_rich Low_complexity Low_complexity 1 25 0 3883 228 22 37 chr9 118778774 118779877 -23491567 - L1MB7 LINE L1 -5435 1107 22 452 358 28 46 chr9 118779897 118780288 -23491156 + L2 LINE L2 2035 2418 -896 252 200 33 0 chr9 118780631 118780691 -23490753 + MLT1K LTR MaLR 523 584 -4 23 33 0 0 chr9 118781358 118781388 -23490056 + AT_rich Low_complexity Low_complexity 1 30 0 529 257 131 14 chr9 118782400 118782622 -23488822 + MIR SINE MIR 3 250 -12 225 222 56 0 chr9 118782630 118782684 -23488760 - L2 LINE L2 -6 3307 3251 230 295 74 42 chr9 118782766 118782861 -23488583 + MIR SINE MIR 43 140 -68 520 315 149 5 chr9 118782923 118783145 -23488299 - MIR SINE MIR -1 261 8 41 36 0 0 chr9 118784451 118784506 -23486938 + AT_rich Low_complexity Low_complexity 1 55 0 2122 123 0 10 chr9 118784544 118784846 -23486598 + AluSx SINE Alu 1 299 -13 195 69 0 0 chr9 118785582 118785611 -23485833 + (TAAAAA)n Simple_repeat Simple_repeat 6 34 0 315 273 0 26 chr9 118785628 118785705 -23485739 - MER91 DNA MER1_type -81 115 41 218 195 0 0 chr9 118786822 118786863 -23484581 + GA-rich Low_complexity Low_complexity 3 43 0 405 39 0 0 chr9 118786863 118786914 -23484530 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 2345 96 0 0 chr9 118787190 118787491 -23483953 + AluY SINE Alu 1 301 -10 30 0 0 0 chr9 118787491 118787521 -23483923 + AT_rich Low_complexity Low_complexity 1 30 0 222 346 74 0 chr9 118787927 118788089 -23483355 + L2 LINE L2 2558 2731 -583 302 369 63 22 chr9 118788469 118788691 -23482753 + MIR SINE MIR 20 250 -12 1127 69 0 0 chr9 118789689 118789833 -23481611 + L1PA8 LINE L1 6020 6163 -9 496 297 7 26 chr9 118789843 118789998 -23481446 + MIR SINE MIR 20 171 -91 344 343 112 35 chr9 118790365 118790855 -23480589 + L2 LINE L2 2503 3032 -240 22 0 0 0 chr9 118790946 118790968 -23480476 + AT_rich Low_complexity Low_complexity 1 22 0 232 128 26 0 chr9 118790972 118791011 -23480433 + L2 LINE L2 3015 3054 -218 451 271 124 7 chr9 118791855 118792161 -23479283 - L1MC4 LINE L1 -1 8041 7700 1625 160 14 7 chr9 118792169 118792476 -23478968 - AluSx SINE Alu 0 309 1 190 338 62 25 chr9 118792479 118792559 -23478885 + MIR SINE MIR 25 107 -101 23 54 0 0 chr9 118792665 118792702 -23478742 + AT_rich Low_complexity Low_complexity 1 37 0 2144 126 7 3 chr9 118792923 118793224 -23478220 + AluSx SINE Alu 1 302 -10 218 255 0 0 chr9 118795205 118795256 -23476188 + CT-rich Low_complexity Low_complexity 2 52 0 820 120 16 0 chr9 118795509 118795634 -23475810 + AluJb SINE Alu 1 127 -185 24 32 0 0 chr9 118795634 118795665 -23475779 + AT_rich Low_complexity Low_complexity 1 31 0 229 271 24 47 chr9 118795732 118795817 -23475627 + MIR SINE MIR 57 139 -123 221 304 29 0 chr9 118796228 118796297 -23475147 + GA-rich Low_complexity Low_complexity 5 75 0 23954 44 2 0 chr9 118796299 118800354 -23471090 - L1P LINE L1 -2068 4078 15 239 104 21 0 chr9 118800409 118800457 -23470987 + (TA)n Simple_repeat Simple_repeat 2 50 0 357 288 106 49 chr9 118800746 118800851 -23470593 + MIR SINE MIR 12 110 -152 2220 107 3 19 chr9 118800851 118801168 -23470276 - AluSq SINE Alu -1 312 1 357 288 106 49 chr9 118801168 118801288 -23470156 + MIR SINE MIR 110 250 -12 197 211 18 0 chr9 118801997 118802054 -23469390 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 21 0 0 0 chr9 118802128 118802149 -23469295 + AT_rich Low_complexity Low_complexity 1 21 0 276 368 6 39 chr9 118802783 118802965 -23468479 - MER5A DNA MER1_type 0 189 14 183 343 101 41 chr9 118803279 118803448 -23467996 + MIR SINE MIR 69 247 -15 339 349 67 14 chr9 118803577 118803727 -23467717 + MIR SINE MIR 32 187 -63 2107 184 49 0 chr9 118803754 118804162 -23467282 - MSTA LTR MaLR 0 428 1 9168 172 16 1 chr9 118804162 118805774 -23465670 - MSTA-int LTR MaLR 0 1651 17 2330 145 48 12 chr9 118805774 118806187 -23465257 - MSTA LTR MaLR 0 428 1 2324 151 46 12 chr9 118806472 118806884 -23464560 - MSTB LTR MaLR 0 426 1 318 241 13 0 chr9 118806884 118806963 -23464481 + MIR SINE MIR 81 160 -102 214 222 0 0 chr9 118807096 118807141 -23464303 + MIR SINE MIR 97 141 -121 310 240 51 28 chr9 118807242 118807392 -23464052 - MLT1J2 LTR MaLR -191 218 69 402 278 0 0 chr9 118807471 118807568 -23463876 + MIR SINE MIR 159 255 -7 2175 123 3 0 chr9 118807645 118807962 -23463482 - AluSx SINE Alu 0 312 1 215 324 81 0 chr9 118808247 118808321 -23463123 - L2 LINE L2 -254 3018 2939 1744 148 71 46 chr9 118808752 118809118 -23462326 - THE1C LTR MaLR 0 375 1 193 296 93 0 chr9 118809182 118809236 -23462208 + MIR SINE MIR 50 108 -154 187 263 44 70 chr9 118809195 118809309 -23462135 + L2 LINE L2 2749 2859 -455 * 243 88 0 0 chr9 118809672 118809706 -23461738 + (TG)n Simple_repeat Simple_repeat 1 34 0 281 312 35 43 chr9 118809805 118809946 -23461498 + MIR SINE MIR 98 237 -25 190 143 86 0 chr9 118809956 118809991 -23461453 - L2 LINE L2 -2 3270 3233 188 111 28 0 chr9 118810722 118810758 -23460686 + (TA)n Simple_repeat Simple_repeat 2 38 0 396 0 0 0 chr9 118811000 118811044 -23460400 + (TG)n Simple_repeat Simple_repeat 2 45 0 893 185 9 24 chr9 118811562 118811773 -23459671 + L1MC2 LINE L1 6115 6322 -22 1164 171 45 31 chr9 118811821 118812043 -23459401 + AluJb SINE Alu 62 286 -26 233 149 21 21 chr9 118812093 118812140 -23459304 + L2 LINE L2 2979 3025 -247 295 217 57 57 chr9 118812248 118812354 -23459090 + MLT1J2 LTR MaLR 344 449 -1 197 324 29 29 chr9 118812363 118812468 -23458976 + L2 LINE L2 3193 3297 -16 380 345 48 19 chr9 118812509 118812718 -23458726 + MIR SINE MIR 5 219 -43 1910 221 42 50 chr9 118813414 118813917 -23457527 - MLT2B3 LTR ERVL -53 501 3 1488 203 19 39 chr9 118814891 118815273 -23456171 + MLT1A2 LTR MaLR 1 466 -1 1089 219 19 38 chr9 118816326 118816591 -23454853 + MIR SINE MIR 3 262 0 453 340 103 0 chr9 118816752 118816937 -23454507 - MIR SINE MIR -39 223 20 1764 164 3 32 chr9 118816953 118817265 -23454179 + AluJb SINE Alu 1 303 -9 217 335 162 31 chr9 118817708 118817899 -23453545 + MIR SINE MIR 46 261 -1 847 245 52 0 chr9 118817915 118818107 -23453337 + MIR SINE MIR 44 245 -17 333 148 11 45 chr9 118818871 118818959 -23452485 + T-rich Low_complexity Low_complexity 3 87 0 24 32 0 0 chr9 118819512 118819543 -23451901 + AT_rich Low_complexity Low_complexity 1 31 0 368 236 0 47 chr9 118820031 118820137 -23451307 + MIR SINE MIR 92 192 -70 1843 297 67 66 chr9 118821227 118821487 -23449957 + L2 LINE L2 1931 2189 -1124 1705 107 58 84 chr9 118821487 118821796 -23449648 - AluSx SINE Alu -11 301 1 1843 297 67 66 chr9 118821796 118822601 -23448843 + L2 LINE L2 2189 3000 -313 460 262 40 0 chr9 118823061 118823187 -23448257 - MIR SINE MIR -79 183 53 311 246 52 137 chr9 118823482 118823693 -23447751 + L3 LINE CR1 1370 1562 -15 261 311 75 31 chr9 118823733 118823894 -23447550 - LTR16C LTR ERVL 0 491 324 1493 176 58 112 chr9 118824322 118824650 -23446794 + MLT1D LTR MaLR 1 290 -215 2224 119 0 10 chr9 118824650 118824962 -23446482 - AluSg1 SINE Alu 0 309 1 1493 176 58 112 chr9 118824962 118825167 -23446277 + MLT1D LTR MaLR 290 505 0 267 200 49 0 chr9 118825240 118825319 -23446125 - MLT1I LTR MaLR -4 446 318 349 271 15 59 chr9 118825434 118825637 -23445807 - MLT1I LTR MaLR -123 286 108 183 80 0 0 chr9 118826331 118826356 -23445088 + (TTC)n Simple_repeat Simple_repeat 1 25 0 443 326 43 101 chr9 118826519 118826866 -23444578 + L2 LINE L2 2944 3270 -2 1547 186 32 46 chr9 118827137 118827507 -23443937 + MLT1A1 LTR MaLR 1 365 0 206 315 14 0 chr9 118827856 118827929 -23443515 + CT-rich Low_complexity Low_complexity 3 76 0 336 48 0 0 chr9 118828586 118828628 -23442816 + (CA)n Simple_repeat Simple_repeat 2 43 0 2129 99 14 24 chr9 118828703 118828997 -23442447 - AluSc SINE Alu -18 291 1 340 352 121 19 chr9 118829275 118829772 -23441672 + L2 LINE L2 2550 3099 -173 194 354 0 12 chr9 118829864 118829946 -23441498 + L2 LINE L2 3228 3308 -5 365 295 26 64 chr9 118830602 118830755 -23440689 + MIR3 SINE MIR 33 182 -26 220 252 93 75 chr9 118831452 118831559 -23439885 - MIR SINE MIR -6 256 148 191 189 151 0 chr9 118831915 118831968 -23439476 + L2 LINE L2 1022 1082 -2232 704 144 28 28 chr9 118832419 118832599 -23438845 + GA-rich Low_complexity Low_complexity 1 180 0 418 287 16 25 chr9 118833633 118833755 -23437689 + MIR SINE MIR 9 129 -79 181 213 160 43 chr9 118833976 118834070 -23437374 - L2 LINE L2 -1 3312 3208 333 0 0 0 chr9 118834174 118834211 -23437233 + (TG)n Simple_repeat Simple_repeat 2 38 0 230 381 31 21 chr9 118834216 118834313 -23437131 - L2 LINE L2 -262 3010 2913 226 333 38 103 chr9 118834397 118834540 -23436904 - L2 LINE L2 -474 2840 2724 686 156 0 55 chr9 118834540 118834668 -23436776 - FLAM_A SINE Alu -9 124 4 226 333 38 103 chr9 118834668 118834815 -23436629 - L2 LINE L2 -590 2724 2569 663 272 108 39 chr9 118835971 118836276 -23435168 - L2 LINE L2 -2 3311 2986 214 269 19 0 chr9 118836777 118836829 -23434615 - L2 LINE L2 -221 3051 2999 242 239 0 0 chr9 118837196 118837242 -23434202 - L2 LINE L2 -34 3279 3234 184 311 0 33 chr9 118837249 118837310 -23434134 + L2 LINE L2 3254 3312 -1 247 375 69 26 chr9 118837322 118837554 -23433890 - L2 LINE L2 -342 2972 2731 208 148 33 49 chr9 118837558 118837619 -23433825 + A-rich Low_complexity Low_complexity 3 62 0 1067 197 98 20 chr9 118838787 118839143 -23432301 - MER114 LTR ERV -246 402 19 25 0 0 0 chr9 118839412 118839437 -23432007 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr9 118839505 118839542 -23431902 + AT_rich Low_complexity Low_complexity 1 37 0 578 277 100 73 chr9 118840111 118840582 -23430862 - MLT1H LTR MaLR -4 545 57 2441 62 13 0 chr9 118840582 118840886 -23430558 + AluY SINE Alu 1 308 -3 578 277 100 73 chr9 118840886 118840945 -23430499 - MLT1H LTR MaLR -492 57 1 221 388 52 0 chr9 118841354 118841470 -23429974 - L2 LINE L2 -1 3271 3150 230 56 28 0 chr9 118842148 118842184 -23429260 + (TG)n Simple_repeat Simple_repeat 2 38 0 354 256 38 68 chr9 118842397 118842530 -23428914 + MIR SINE MIR 8 136 -126 204 172 52 86 chr9 118842632 118842690 -23428754 - L3 LINE CR1 -894 683 628 198 316 44 108 chr9 118842993 118843151 -23428293 - L2 LINE L2 0 3272 3125 705 307 175 15 chr9 118843419 118843884 -23427560 - L2 LINE L2 -4 3309 2759 195 182 0 23 chr9 118843894 118843938 -23427506 + L2 LINE L2 3268 3310 -3 212 337 73 39 chr9 118844210 118844388 -23427056 - L2 LINE L2 -237 3035 2852 607 258 0 0 chr9 118845068 118845192 -23426252 + MIR SINE MIR 2 125 -137 197 231 19 19 chr9 118845440 118845492 -23425952 - MIR SINE MIR -171 91 40 350 351 38 8 chr9 118845512 118845643 -23425801 - MIR3 SINE MIR -36 172 38 218 346 20 10 chr9 118846263 118846364 -23425080 + L3 LINE CR1 998 1099 -478 4180 180 18 52 chr9 118846665 118847529 -23423915 - L1MB3 LINE L1 -2 6181 5344 2655 114 12 19 chr9 118847529 118847951 -23423493 - L1PA10 LINE L1 0 6168 5750 4180 180 18 52 chr9 118847951 118848172 -23423272 - L1MB3 LINE L1 -839 5344 5117 183 297 30 40 chr9 118848190 118848291 -23423153 - L2 LINE L2 -91 3222 3123 431 338 169 14 chr9 118849223 118849507 -23421937 - L2 LINE L2 -534 2780 2453 354 313 31 31 chr9 118849502 118849665 -23421779 + L2 LINE L2 2920 3082 -190 * 881 295 9 0 chr9 118849795 118850022 -23421422 + MIR SINE MIR 13 241 -21 288 337 19 53 chr9 118850134 118850334 -23421110 - L2 LINE L2 -874 2440 2250 1760 218 66 14 chr9 118850334 118850775 -23420669 - MLT1C LTR MaLR -3 464 1 288 337 19 53 chr9 118850775 118850838 -23420606 - L2 LINE L2 -1064 2250 2186 510 336 40 16 chr9 118850843 118851090 -23420354 + MIR SINE MIR 8 260 -2 316 315 40 70 chr9 118851318 118851651 -23419793 + L3 LINE CR1 1186 1560 -17 906 305 27 14 chr9 118852188 118852483 -23418961 + LTR16A LTR ERVL 25 323 -127 850 128 13 0 chr9 118852566 118852715 -23418729 - L1MA10 LINE L1 -5 6329 6179 8922 211 35 37 chr9 118852976 118856054 -23415390 - L1MA9 LINE L1 -202 6110 3042 1815 172 0 7 chr9 118856054 118856356 -23415088 - AluJb SINE Alu -12 300 1 8922 211 35 37 chr9 118856356 118856513 -23414931 - L1MA9 LINE L1 -3270 3042 2886 332 304 113 0 chr9 118856513 118856628 -23414816 + LTR16A LTR ERVL 318 445 -5 1268 296 80 0 chr9 118856632 118857071 -23414373 + L2 LINE L2 1710 2183 -1131 682 261 19 0 chr9 118857071 118857228 -23414216 - MER58B DNA MER1_type 0 341 182 208 233 186 78 chr9 118857324 118857453 -23413991 + L2 LINE L2 2261 2403 -911 912 340 99 39 chr9 118857493 118858213 -23413231 + L2 LINE L2 2549 3301 -12 1785 297 31 71 chr9 118858219 118859382 -23412062 + HAL1 LINE L1 4 1119 -1388 808 251 105 56 chr9 118859386 118859731 -23411713 + MLT2D LTR ERVL 1 369 -45 486 75 0 0 chr9 118859731 118859798 -23411646 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 808 251 105 56 chr9 118859798 118859843 -23411601 + MLT2D LTR ERVL 369 410 -4 961 293 76 48 chr9 118859843 118860061 -23411383 + HAL1 LINE L1 1119 1329 -1178 949 275 9 0 chr9 118860061 118860283 -23411161 + MER58A DNA MER1_type 1 224 0 961 293 76 48 chr9 118860283 118860877 -23410567 + HAL1 LINE L1 1329 1954 -553 480 139 35 0 chr9 118860925 118861011 -23410433 + MLT2B2 LTR ERVL 1 89 -426 654 152 16 5 chr9 118861014 118861138 -23410306 + MSTA LTR MaLR 1 131 -244 985 214 63 100 chr9 118861226 118861311 -23410133 - MLT1A1 LTR MaLR 0 365 278 7154 190 4 21 chr9 118861311 118863599 -23407845 - L1PA15 LINE L1 -3 6162 3877 985 214 63 100 chr9 118863599 118863892 -23407552 - MLT1A1 LTR MaLR -87 278 1 219 256 37 37 chr9 118865682 118865764 -23405680 - MIR SINE MIR -89 173 92 226 238 105 29 chr9 118866939 118867044 -23404400 + HAL1b LINE L1 89 201 -1147 2097 128 0 3 chr9 118867124 118867414 -23404030 + AluSx SINE Alu 11 299 -13 21 36 0 0 chr9 118867699 118867727 -23403717 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr9 118867855 118867881 -23403563 + AT_rich Low_complexity Low_complexity 1 26 0 387 289 122 37 chr9 118868124 118868394 -23403050 - L2 LINE L2 -338 2976 2684 782 223 37 28 chr9 118868979 118869209 -23402235 + MIR SINE MIR 33 260 -2 972 215 5 0 chr9 118869423 118869628 -23401816 - L1PB4 LINE L1 0 6156 5951 22 56 0 0 chr9 118869655 118869691 -23401753 + AT_rich Low_complexity Low_complexity 1 36 0 275 262 68 0 chr9 118869835 118869938 -23401506 + MER103 DNA DNA 55 164 -2 295 235 0 0 chr9 118870214 118870282 -23401162 + MLT2B3 LTR ERVL 1 68 -486 1464 231 59 109 chr9 118870381 118870840 -23400604 + MLT2B3 LTR ERVL 73 508 -46 422 35 0 18 chr9 118870872 118870929 -23400515 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2588 127 29 5 chr9 118871679 118872095 -23399349 + L1PA13 LINE L1 5735 6160 -3 1915 131 0 60 chr9 118872121 118872435 -23399009 - AluSx SINE Alu -17 295 1 521 299 62 50 chr9 118872522 118872843 -23398601 - L2 LINE L2 0 3313 2989 752 134 121 0 chr9 118873080 118873229 -23398215 + L1MA4A LINE L1 6137 6303 0 210 348 87 7 chr9 118874414 118874552 -23396892 + MIR SINE MIR 4 152 -110 456 360 0 0 chr9 118874706 118874842 -23396602 + MIR3 SINE MIR 65 200 -8 294 291 0 39 chr9 118874896 118874999 -23396445 - MIR SINE MIR 0 262 164 266 146 0 91 chr9 118875121 118875176 -23396268 - MIR SINE MIR 0 262 213 455 294 145 23 chr9 118875319 118875533 -23395911 - MIR SINE MIR 0 262 23 317 272 123 0 chr9 118875789 118875903 -23395541 - L1ME4a LINE L1 -2 6119 5992 180 283 17 33 chr9 118875942 118876002 -23395442 + MIR SINE MIR 36 94 -114 685 298 35 8 chr9 118876057 118876312 -23395132 - MIR SINE MIR 0 262 1 938 278 41 9 chr9 118876355 118876672 -23394772 - L1ME4a LINE L1 -195 5926 5600 196 111 0 0 chr9 118877011 118877038 -23394406 - MIR SINE MIR -18 244 218 187 265 82 0 chr9 118877012 118877061 -23394383 - L2 LINE L2 -25 3247 3195 * 389 342 18 0 chr9 118877393 118877504 -23393940 - MER81 DNA DNA 0 114 2 276 321 49 69 chr9 118877770 118878016 -23393428 - L2 LINE L2 -169 3103 2863 672 345 87 26 chr9 118878233 118878781 -23392663 - L2 LINE L2 0 3313 2712 300 256 39 13 chr9 118878894 118878972 -23392472 - L2 LINE L2 -31 3241 3162 298 329 20 47 chr9 118878978 118879127 -23392317 + MIR SINE MIR 109 253 -9 27 92 0 0 chr9 118879540 118879616 -23391828 + AT_rich Low_complexity Low_complexity 1 76 0 22 35 0 0 chr9 118880178 118880207 -23391237 + AT_rich Low_complexity Low_complexity 1 29 0 1586 117 0 0 chr9 118880207 118880438 -23391006 - L1MA1 LINE L1 -4 6298 6068 285 343 23 0 chr9 118880523 118880660 -23390784 + MIR3 SINE MIR 54 194 -14 193 295 62 84 chr9 118880849 118881076 -23390368 - MIR SINE MIR -10 252 31 515 297 22 22 chr9 118881646 118881828 -23389616 - MIR SINE MIR -75 187 6 521 316 111 8 chr9 118882128 118882362 -23389082 + MIR SINE MIR 5 262 0 3602 217 57 26 chr9 118882363 118883865 -23387579 - L1MB8 LINE L1 -1 6177 4608 272 33 33 50 chr9 118883865 118883925 -23387519 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 3602 217 57 26 chr9 118883925 118884216 -23387228 - L1MB8 LINE L1 -1570 4608 4328 21 36 0 0 chr9 118884251 118884279 -23387165 + AT_rich Low_complexity Low_complexity 1 28 0 327 309 59 44 chr9 118884418 118884622 -23386822 - MIR SINE MIR -32 230 24 309 307 180 32 chr9 118884709 118884898 -23386546 + MIR SINE MIR 22 238 -24 1058 322 107 14 chr9 118885283 118885795 -23385649 + MLT1G1 LTR MaLR 26 585 -10 319 317 20 10 chr9 118885932 118886033 -23385411 - L2 LINE L2 -4 3268 3167 1261 302 72 45 chr9 118886252 118886791 -23384653 - MLT1G1 LTR MaLR -36 559 6 249 314 71 62 chr9 118887233 118887443 -23384001 + L2 LINE L2 3090 3301 -12 4690 176 20 48 chr9 118887619 118888175 -23383269 + L1MC2 LINE L1 6137 6707 -1043 1262 211 57 72 chr9 118888175 118888577 -23382867 + MSTD LTR MaLR 1 396 0 4690 176 20 48 chr9 118888577 118889072 -23382372 + L1MC2 LINE L1 6707 7750 0 546 297 99 9 chr9 118890144 118890366 -23381078 + MIR SINE MIR 21 262 0 649 290 205 25 chr9 118890378 118890826 -23380618 + L3 LINE CR1 739 1267 -310 3423 270 91 49 chr9 118890916 118891722 -23379722 + L2 LINE L2 1330 2101 -1213 2129 109 0 0 chr9 118891722 118892035 -23379409 + AluSx SINE Alu 1 313 0 3423 270 91 49 chr9 118892035 118892522 -23378922 + L2 LINE L2 2101 2702 -612 2870 151 57 0 chr9 118892522 118893086 -23378358 - L1MA8 LINE L1 -5 6286 5691 3423 270 91 49 chr9 118893086 118893347 -23378097 + L2 LINE L2 2702 2951 -363 1097 196 16 8 chr9 118893431 118893686 -23377758 + L1MA10 LINE L1 4203 4459 -1687 4694 208 9 34 chr9 118893688 118895212 -23376232 + L1MA10 LINE L1 4848 6334 0 215 229 0 42 chr9 118895284 118895332 -23376112 - MIR SINE MIR -150 112 67 387 119 0 0 chr9 118895617 118895684 -23375760 + (TA)n Simple_repeat Simple_repeat 2 68 0 264 149 0 0 chr9 118896737 118896784 -23374660 + (TG)n Simple_repeat Simple_repeat 1 47 0 248 348 144 50 chr9 118898060 118898739 -23372705 + L2 LINE L2 2230 2972 -342 185 362 0 0 chr9 118898780 118898849 -23372595 - L2 LINE L2 -4 3309 3241 2114 140 19 32 chr9 118898863 118899241 -23372203 - THE1C LTR MaLR 0 375 3 249 77 0 77 chr9 118899552 118899617 -23371827 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 657 69 0 0 chr9 118899617 118899704 -23371740 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 290 304 52 37 chr9 118899709 118899844 -23371600 - L3 LINE CR1 -2 1575 1439 207 345 91 38 chr9 118899878 118900087 -23371357 + MIR SINE MIR 29 248 -14 213 39 0 0 chr9 118900221 118900247 -23371197 + (CA)n Simple_repeat Simple_repeat 2 27 0 402 21 0 0 chr9 118900538 118900585 -23370859 + (TA)n Simple_repeat Simple_repeat 2 48 0 288 371 35 0 chr9 118900670 118900786 -23370658 + L2 LINE L2 3185 3304 -9 1476 163 6 55 chr9 118902085 118902428 -23369016 + L1MA10 LINE L1 6006 6331 -3 1491 222 84 27 chr9 118902784 118903226 -23368218 + MLT1C LTR MaLR 1 467 0 1039 242 53 4 chr9 118903599 118903880 -23367564 + LTR16A LTR ERVL 156 450 0 188 111 28 0 chr9 118904632 118904668 -23366776 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr9 118905435 118905458 -23365986 + AT_rich Low_complexity Low_complexity 1 23 0 418 297 38 83 chr9 118906849 118907115 -23364329 - MIR SINE MIR -6 256 3 313 306 194 11 chr9 118907137 118907323 -23364121 + L3 LINE CR1 1180 1399 -178 199 368 0 0 chr9 118907913 118907970 -23363474 - L2 LINE L2 -92 3180 3124 272 296 40 33 chr9 118908436 118908588 -23362856 + MIR SINE MIR 40 192 -70 233 290 135 48 chr9 118908768 118908975 -23362469 + L2 LINE L2 3059 3283 -30 183 371 9 19 chr9 118909036 118909141 -23362303 + MIR3 SINE MIR 86 189 -19 706 311 0 0 chr9 118911674 118911867 -23359577 - MIR SINE MIR -21 241 49 201 176 0 0 chr9 118911903 118911937 -23359507 + A-rich Low_complexity Low_complexity 1 34 0 224 351 126 26 chr9 118911996 118912267 -23359177 - L2 LINE L2 -36 3277 2980 194 365 28 28 chr9 118913348 118913455 -23357989 - MIR3 SINE MIR -93 115 9 408 308 42 51 chr9 118913710 118913924 -23357520 + MIR SINE MIR 38 249 -13 351 0 0 0 chr9 118914162 118914201 -23357243 + (CA)n Simple_repeat Simple_repeat 2 40 0 359 356 0 9 chr9 118914435 118914550 -23356894 - L2 LINE L2 0 3313 3200 192 262 0 0 chr9 118914843 118914885 -23356559 + MIR SINE MIR 102 143 -119 400 295 76 129 chr9 118914930 118915272 -23356172 + L2 LINE L2 2949 3272 0 534 257 63 0 chr9 118915970 118916145 -23355299 - Charlie8 DNA MER1_type -2231 186 1 1865 171 3 0 chr9 118916540 118916839 -23354605 + AluJb SINE Alu 1 300 -12 352 240 91 78 chr9 118917273 118917427 -23354017 + MER57B LTR ERV1 106 261 -173 373 152 13 13 chr9 118917476 118917555 -23353889 + LTR54 LTR ERV1 432 510 0 221 241 37 0 chr9 118917806 118917860 -23353584 + L2 LINE L2 3210 3265 -7 297 0 0 0 chr9 118917921 118917954 -23353490 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1077 185 129 59 chr9 118918258 118918615 -23352829 - MLT1B LTR MaLR -8 382 1 241 230 50 10 chr9 118919806 118919906 -23351538 + (TA)n Simple_repeat Simple_repeat 1 104 0 328 309 27 90 chr9 118920432 118920655 -23350789 + L2 LINE L2 2972 3180 -92 609 314 36 9 chr9 118920691 118920914 -23350530 - MIR SINE MIR -16 246 18 189 107 0 0 chr9 118920920 118920948 -23350496 + (TA)n Simple_repeat Simple_repeat 1 28 0 198 103 0 0 chr9 118921041 118921070 -23350374 + (A)n Simple_repeat Simple_repeat 1 29 0 740 246 173 0 chr9 118921106 118921326 -23350118 - MLT1H1 LTR MaLR 0 555 298 234 276 26 0 chr9 118921484 118921560 -23349884 - MLT1H1 LTR MaLR -476 79 2 467 350 0 0 chr9 118921743 118921880 -23349564 + L2 LINE L2 3136 3272 0 224 273 0 0 chr9 118921958 118922002 -23349442 + MIR3 SINE MIR 157 200 -8 836 323 92 22 chr9 118922038 118922530 -23348914 + L3 LINE CR1 939 1464 -113 2093 99 3 14 chr9 118922808 118923116 -23348328 - AluY SINE Alu 0 305 1 407 336 8 0 chr9 118923285 118923413 -23348031 - MIR SINE MIR -116 146 18 180 311 14 40 chr9 118923498 118923572 -23347872 + L2 LINE L2 3180 3251 -62 430 319 60 0 chr9 118923846 118924012 -23347432 + MIR SINE MIR 56 231 -31 388 332 71 25 chr9 118924014 118924252 -23347192 + MLT1J2 LTR MaLR 37 285 -165 252 372 0 13 chr9 118924779 118924857 -23346587 - MIR SINE MIR -166 96 20 24 0 0 0 chr9 118925788 118925812 -23345632 + AT_rich Low_complexity Low_complexity 1 24 0 279 0 0 0 chr9 118925945 118925976 -23345468 + (A)n Simple_repeat Simple_repeat 1 31 0 414 338 15 45 chr9 118925979 118926177 -23345267 - MIR SINE MIR -6 256 65 225 296 0 0 chr9 118926583 118926637 -23344807 + GA-rich Low_complexity Low_complexity 3 56 0 1552 184 0 55 chr9 118926925 118927234 -23344210 + AluJb SINE Alu 13 304 -8 1162 249 55 49 chr9 118927310 118927836 -23343608 + L1MC5 LINE L1 6999 7527 -434 2343 120 25 11 chr9 118927905 118928262 -23343182 + THE1B LTR MaLR 1 362 -2 9669 120 49 37 chr9 118928264 118929826 -23341618 + THE1B-int LTR MaLR 1 1580 0 2197 134 21 43 chr9 118929826 118930198 -23341246 + THE1B LTR MaLR 1 364 0 23 33 0 0 chr9 118930400 118930430 -23341014 + AT_rich Low_complexity Low_complexity 1 30 0 197 185 67 151 chr9 118930693 118930812 -23340632 + MIR SINE MIR 136 244 -18 256 359 42 21 chr9 118931145 118931287 -23340157 + L3 LINE CR1 1416 1560 -17 431 299 48 43 chr9 118931317 118931524 -23339920 - MIR SINE MIR -15 247 40 441 0 0 0 chr9 118931635 118931684 -23339760 + (TG)n Simple_repeat Simple_repeat 2 50 0 199 296 0 99 chr9 118931704 118931785 -23339659 - MIR SINE MIR -162 100 28 238 329 0 0 chr9 118932110 118932186 -23339258 + (CATA)n Simple_repeat Simple_repeat 4 79 0 302 336 22 22 chr9 118932347 118932484 -23338960 - MER5A DNA MER1_type -18 171 35 401 278 46 0 chr9 118932621 118932729 -23338715 + MIR SINE MIR 100 212 -50 747 307 13 4 chr9 118933173 118933401 -23338043 + MIR SINE MIR 13 242 -20 399 312 73 7 chr9 118934084 118934424 -23337020 - MLT1I LTR MaLR 0 409 5 382 348 79 50 chr9 118934489 118935083 -23336361 - L2 LINE L2 -85 3187 2578 228 353 78 7 chr9 118935356 118935509 -23335935 - MIR SINE MIR -74 188 25 600 312 73 28 chr9 118936113 118936430 -23335014 - MLT1I LTR MaLR -8 401 71 369 324 30 14 chr9 118937089 118937270 -23334174 + MIR SINE MIR 3 184 -62 1109 229 98 81 chr9 118937309 118937842 -23333602 - MLT1H LTR MaLR -1 548 7 365 232 56 84 chr9 118938546 118938688 -23332756 - MIR SINE MIR -43 219 82 371 277 50 28 chr9 118938984 118939125 -23332319 + MIR SINE MIR 65 208 -54 259 350 68 0 chr9 118939846 118939963 -23331481 - MIR3 SINE MIR -73 135 11 210 367 41 0 chr9 118940548 118940646 -23330798 + MIR3 SINE MIR 100 201 -7 242 275 104 16 chr9 118940775 118940968 -23330476 - L1MC/D LINE L1 -2056 5752 5543 456 19 0 0 chr9 118941043 118941096 -23330348 + (ATG)n Simple_repeat Simple_repeat 1 53 0 344 314 32 16 chr9 118941169 118941293 -23330151 - MIR SINE MIR -124 138 13 528 372 63 27 chr9 118941691 118942167 -23329277 - L3 LINE CR1 -137 1440 948 203 388 35 35 chr9 118942570 118942686 -23328758 - MIR SINE MIR -119 143 28 401 361 93 0 chr9 118943173 118943367 -23328077 - MIR SINE MIR -2 260 49 204 277 228 0 chr9 118943415 118943516 -23327928 - MER5A DNA MER1_type -7 182 59 260 306 138 38 chr9 118944363 118944523 -23326921 + MIR SINE MIR 2 177 -85 295 366 68 11 chr9 118945036 118945227 -23326217 + MIR SINE MIR 5 206 -56 241 320 60 30 chr9 118945235 118945335 -23326109 - MIR SINE MIR -111 151 49 193 247 79 45 chr9 118945404 118945493 -23325951 + L3 LINE CR1 920 1011 -566 2203 233 49 69 chr9 118945890 118946050 -23325394 + L1MD2 LINE L1 4296 4458 -1901 2242 120 0 0 chr9 118946050 118946349 -23325095 + AluSc SINE Alu 5 303 -6 2203 233 49 69 chr9 118946349 118946466 -23324978 + L1MD2 LINE L1 4458 4576 -1783 2118 138 45 23 chr9 118946466 118946820 -23324624 + THE1B LTR MaLR 1 362 -2 2203 233 49 69 chr9 118946820 118947577 -23323867 + L1MD2 LINE L1 4576 5347 -1012 2340 93 0 0 chr9 118947577 118947877 -23323567 + AluY SINE Alu 1 300 -11 2203 233 49 69 chr9 118947877 118948028 -23323416 + L1MD2 LINE L1 5347 5500 -859 2636 161 9 2 chr9 118948028 118948481 -23322963 + L1PA16 LINE L1 5706 6161 -5 2203 233 49 69 chr9 118948481 118948728 -23322716 + L1MD2 LINE L1 5500 5706 -653 1151 229 36 36 chr9 118948731 118949089 -23322355 + MLT1A1 LTR MaLR 1 358 -7 1374 238 66 70 chr9 118949100 118949704 -23321740 + L1MD2 LINE L1 5709 6310 -49 232 300 14 0 chr9 118950494 118950564 -23320880 - MIR SINE MIR -34 228 158 269 287 26 48 chr9 118950927 118951079 -23320365 - MIR SINE MIR -62 146 16 1591 252 17 67 chr9 118951136 118951358 -23320086 + LTR16C LTR ERVL 50 239 -252 3918 163 14 34 chr9 118951358 118952099 -23319345 - L1MB2 LINE L1 0 6171 5446 1591 252 17 67 chr9 118952099 118952341 -23319103 + LTR16C LTR ERVL 239 491 0 28 48 0 0 chr9 118952950 118952992 -23318452 + AT_rich Low_complexity Low_complexity 1 42 0 412 295 78 36 chr9 118953120 118953313 -23318131 - L3 LINE CR1 -53 1524 1324 4557 195 9 7 chr9 118954173 118955128 -23316316 - L1MB2 LINE L1 -1752 4394 3438 7434 55 3 0 chr9 118955158 118956472 -23314972 - L1PA7 LINE L1 -12 6142 4824 2897 82 0 18 chr9 118956476 118956856 -23314588 - L1PA7 LINE L1 0 6154 5782 8864 90 5 1 chr9 118956857 118958063 -23313381 - L1PA7 LINE L1 -1308 4838 3628 7543 103 9 0 chr9 118958130 118959229 -23312215 + L1P LINE L1 2332 3440 -2706 2199 202 12 80 chr9 118959225 118959305 -23312139 - L1MB2 LINE L1 -2681 3465 3381 * 2089 115 0 0 chr9 118959305 118959626 -23311818 - AluSc SINE Alu 0 322 2 2199 202 12 80 chr9 118959626 118960206 -23311238 - L1MB2 LINE L1 -2765 3381 2849 1811 176 3 0 chr9 118960218 118960508 -23310936 + L1PB3 LINE L1 5859 6149 -5 345 100 0 0 chr9 118960750 118960800 -23310644 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 203 291 19 78 chr9 118960944 118961047 -23310397 - L2 LINE L2 -43 3229 3133 377 292 113 12 chr9 118961163 118961373 -23310071 - MIR SINE MIR -3 259 32 232 170 189 0 chr9 118962153 118962206 -23309238 + MLT1E2 LTR MaLR 1 63 -486 282 308 87 10 chr9 118962304 118962408 -23309036 + MLT1E2 LTR MaLR 256 367 -182 21 0 0 0 chr9 118962513 118962534 -23308910 + AT_rich Low_complexity Low_complexity 1 21 0 2415 83 17 20 chr9 118962534 118962882 -23308562 - L1MA2 LINE L1 0 6304 5958 344 250 26 0 chr9 118963399 118963475 -23307969 - MER2 DNA MER2_type 0 345 268 4899 172 22 32 chr9 118963566 118964088 -23307356 - L1PA16 LINE L1 -9 6157 5631 315 0 0 0 chr9 118964088 118964123 -23307321 + (TG)n Simple_repeat Simple_repeat 2 36 0 4899 172 22 32 chr9 118964123 118965090 -23306354 - L1PA16 LINE L1 -535 5631 4688 1134 181 0 0 chr9 118965123 118965316 -23306128 - MER2 DNA MER2_type -152 193 1 375 358 23 28 chr9 118965935 118966111 -23305333 + MIR3 SINE MIR 9 183 -25 418 340 96 26 chr9 118966196 118966467 -23304977 + L2 LINE L2 2564 2853 -461 969 236 16 89 chr9 118966467 118966780 -23304664 + MLT1E2 LTR MaLR 337 626 0 277 240 80 0 chr9 118967364 118967439 -23304005 - MIR3 SINE MIR -32 176 96 259 125 107 36 chr9 118967495 118967551 -23303893 + L1MA8 LINE L1 3879 3938 -2208 26 0 0 0 chr9 118967551 118967577 -23303867 + AT_rich Low_complexity Low_complexity 1 26 0 1295 210 4 15 chr9 118967592 118967848 -23303596 + L1MA8 LINE L1 3929 4183 -1963 1712 155 36 7 chr9 118967848 118968126 -23303318 + AluSx SINE Alu 11 296 -16 207 114 0 0 chr9 118968146 118968181 -23303263 + (GGA)n Simple_repeat Simple_repeat 3 37 0 6349 166 32 12 chr9 118968208 118968305 -23303139 + L1MA8 LINE L1 4151 4245 -2046 351 0 0 0 chr9 118968305 118968344 -23303100 + (CA)n Simple_repeat Simple_repeat 2 40 0 6349 166 32 12 chr9 118968344 118970342 -23301102 + L1MA8 LINE L1 4245 6285 -6 26 30 0 0 chr9 118970343 118970376 -23301068 + AT_rich Low_complexity Low_complexity 1 33 0 199 324 127 32 chr9 118970913 118971166 -23300278 - L2 LINE L2 -353 2961 2685 2829 173 10 10 chr9 118971356 118971820 -23299624 + L1MB3 LINE L1 5686 6152 -31 2251 103 10 0 chr9 118971820 118972130 -23299314 - AluSp SINE Alu 0 313 1 2829 173 10 10 chr9 118972130 118972161 -23299283 + L1MB3 LINE L1 6151 6181 -2 859 142 0 8 chr9 118972178 118972312 -23299132 + FLAM_C SINE Alu 1 133 0 194 266 16 16 chr9 118973021 118973085 -23298359 + MIR SINE MIR 81 144 -64 271 287 85 73 chr9 118973805 118973846 -23297598 - MIR3 SINE MIR -15 193 154 489 286 138 27 chr9 118973846 118974143 -23297301 - MER102a DNA MER1_type 0 330 1 271 287 85 73 chr9 118974143 118974265 -23297179 - MIR3 SINE MIR -54 154 28 411 255 39 0 chr9 118974411 118974513 -23296931 - L2 LINE L2 -1 3312 3207 534 349 40 50 chr9 118974514 118974892 -23296552 + L2 LINE L2 2881 3254 -18 263 313 104 0 chr9 118975530 118975626 -23295818 + L3 LINE CR1 1256 1361 -216 227 353 66 16 chr9 118975679 118975801 -23295643 - L2 LINE L2 -9 3263 3136 191 355 16 0 chr9 118975891 118975953 -23295491 + MIR SINE MIR 53 115 -147 239 351 26 35 chr9 118976061 118976175 -23295269 + L3 LINE CR1 1413 1525 -52 1979 145 0 0 chr9 118976453 118976831 -23294613 - AluSx SINE Alu 0 399 22 327 337 169 4 chr9 118976838 118977081 -23294363 + L2 LINE L2 2470 2752 -562 262 235 61 78 chr9 118977184 118977299 -23294145 + L2 LINE L2 2926 3038 -275 282 56 0 0 chr9 118978315 118978351 -23293093 + (TTA)n Simple_repeat Simple_repeat 2 37 0 219 264 174 45 chr9 118978483 118978638 -23292806 + MIR3 SINE MIR 34 208 0 396 0 0 0 chr9 118979355 118979399 -23292045 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 704 188 6 17 chr9 118979399 118979580 -23291864 + GA-rich Low_complexity Low_complexity 2 180 0 674 300 30 13 chr9 118979841 118980074 -23291370 - MIR SINE MIR -12 250 14 215 337 0 43 chr9 118980171 118980263 -23291181 - MIR SINE MIR -62 200 113 231 335 145 18 chr9 118980405 118980626 -23290818 + MIR SINE MIR 9 257 -5 198 103 0 0 chr9 118980629 118980658 -23290786 + (CAT)n Simple_repeat Simple_repeat 1 29 0 258 236 9 104 chr9 118980738 118980844 -23290600 + MIR SINE MIR 57 152 -110 416 278 131 17 chr9 118981212 118981388 -23290056 + MIR SINE MIR 5 200 -62 401 339 28 17 chr9 118981618 118981795 -23289649 - MIR SINE MIR -3 259 81 284 300 25 0 chr9 118982610 118982690 -23288754 - MIR SINE MIR -93 115 34 2808 148 15 15 chr9 118982899 118983357 -23288087 + L1PA15 LINE L1 5708 6165 0 22 0 0 0 chr9 118983359 118983381 -23288063 + AT_rich Low_complexity Low_complexity 1 22 0 289 282 0 0 chr9 118983692 118983770 -23287674 + MIR SINE MIR 124 201 -61 2243 84 3 3 chr9 118984519 118984846 -23286598 + AluSq SINE Alu 1 327 0 345 298 42 60 chr9 118985029 118985197 -23286247 + MIR SINE MIR 20 184 -78 25 0 0 0 chr9 118985397 118985422 -23286022 + AT_rich Low_complexity Low_complexity 1 25 0 267 296 97 58 chr9 118985701 118985907 -23285537 + MIR SINE MIR 17 230 -32 22 35 0 0 chr9 118985938 118985967 -23285477 + AT_rich Low_complexity Low_complexity 1 29 0 195 270 0 0 chr9 118986540 118986577 -23284867 + L2 LINE L2 3255 3291 -22 304 337 12 47 chr9 118986883 118987052 -23284392 + MIR SINE MIR 100 262 0 198 228 326 22 chr9 118987924 118988016 -23283428 - MIR SINE MIR -129 133 14 193 325 12 12 chr9 118988317 118988397 -23283047 - MIR3 SINE MIR -18 190 111 323 198 12 126 chr9 118988489 118988656 -23282788 + L1MCa LINE L1 1957 2104 -4322 255 355 82 0 chr9 118989057 118989167 -23282277 - MIR SINE MIR -79 183 65 363 269 0 0 chr9 118990509 118990639 -23280805 + GA-rich Low_complexity Low_complexity 1 130 0 21 0 0 0 chr9 118990922 118990943 -23280501 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr9 118990943 118990964 -23280480 + (GA)n Simple_repeat Simple_repeat 2 22 0 356 291 112 107 chr9 118991572 118991831 -23279613 - L1M2 LINE L1 -5553 1296 1040 207 0 0 0 chr9 118991831 118991854 -23279590 + (CCG)n Simple_repeat Simple_repeat 1 23 0 356 291 112 107 chr9 118991854 118992395 -23279049 - L1M2 LINE L1 -5809 1040 492 516 105 0 0 chr9 118993773 118993849 -23277595 + (TA)n Simple_repeat Simple_repeat 1 76 0 23 0 0 0 chr9 118994063 118994086 -23277358 + AT_rich Low_complexity Low_complexity 1 23 0 315 340 26 19 chr9 118995016 118995172 -23276272 - MIR3 SINE MIR -31 177 21 692 305 35 31 chr9 118995871 118996130 -23275314 + MIR SINE MIR 3 262 0 412 326 11 19 chr9 118996230 118996427 -23275017 - MIR SINE MIR -48 214 18 325 274 85 0 chr9 118996611 118996717 -23274727 + MIR SINE MIR 40 154 -108 182 203 0 152 chr9 118997413 118997438 -23274006 - L3 LINE CR1 -27 1550 1538 425 248 57 14 chr9 118997438 118997579 -23273865 - MER5B DNA MER1_type 0 178 32 228 189 78 67 chr9 118998357 118998447 -23272997 + MIR SINE MIR 34 124 -84 285 237 27 33 chr9 118998734 118998838 -23272606 + MIR SINE MIR 42 147 -61 302 261 22 102 chr9 118999040 118999354 -23272090 + L1MC5 LINE L1 7639 7927 -34 226 298 30 61 chr9 118999423 118999554 -23271890 - MIR3 SINE MIR -68 140 14 287 321 38 9 chr9 118999681 118999787 -23271657 - MER20B DNA MER1_type -604 179 71 862 253 38 25 chr9 118999976 119000213 -23271231 + MIR SINE MIR 13 252 -10 553 212 32 156 chr9 119000534 119000874 -23270570 - L2 LINE L2 -7 3306 3009 362 251 65 50 chr9 119000912 119001083 -23270361 + MIR3 SINE MIR 35 208 0 225 277 181 0 chr9 119002427 119002510 -23268934 - MIR3 SINE MIR -50 158 61 198 240 235 31 chr9 119002705 119002901 -23268543 + L2 LINE L2 2189 2424 -890 188 345 12 0 chr9 119003434 119003518 -23267926 + L2 LINE L2 3188 3272 0 188 225 25 0 chr9 119004139 119004179 -23267265 - MIR SINE MIR -16 246 206 205 289 0 0 chr9 119004296 119004348 -23267096 + L2 LINE L2 3204 3255 -17 210 91 0 0 chr9 119004357 119004390 -23267054 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 449 290 127 26 chr9 119004565 119004639 -23266805 - MARNA DNA Mariner -39 547 482 1260 204 90 25 chr9 119004639 119004962 -23266482 + MER2 DNA MER2_type 1 344 0 449 290 127 26 chr9 119004962 119005194 -23266250 - MARNA DNA Mariner -104 482 210 335 323 20 94 chr9 119005336 119005537 -23265907 - MIR3 SINE MIR -17 191 6 273 331 39 24 chr9 119005769 119005896 -23265548 - L2 LINE L2 -21 3251 3123 215 326 62 21 chr9 119006294 119006487 -23264957 + L2 LINE L2 3112 3312 -1 2485 99 0 0 chr9 119006799 119007111 -23264333 - AluSx SINE Alu 0 312 1 427 316 7 0 chr9 119007225 119007361 -23264083 - L2 LINE L2 -531 2783 2647 244 228 18 0 chr9 119008009 119008066 -23263378 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 227 186 0 17 chr9 119008071 119008130 -23263314 + CT-rich Low_complexity Low_complexity 4 61 0 333 160 34 0 chr9 119008142 119008271 -23263173 + (TCCA)n Simple_repeat Simple_repeat 1 133 0 678 202 82 11 chr9 119009532 119009715 -23261729 - MIR SINE MIR -1 261 66 798 193 151 10 chr9 119009857 119010049 -23261395 - MER20 DNA MER1_type 0 219 1 220 321 57 9 chr9 119010367 119010473 -23260971 - L2 LINE L2 -4 3309 3199 200 246 36 45 chr9 119010477 119010587 -23260857 - MIR3 SINE MIR -13 195 87 200 325 38 32 chr9 119011175 119011332 -23260112 + L2 LINE L2 2932 3089 -183 857 279 12 24 chr9 119011442 119011696 -23259748 + MIR SINE MIR 12 262 0 432 181 93 163 chr9 119012089 119012359 -23259085 - ORSL DNA AcHobo -7 268 18 226 333 12 12 chr9 119012460 119012541 -23258903 - MIR3 SINE MIR -40 168 88 1359 144 55 4 chr9 119012759 119013015 -23258429 + L1MA8 LINE L1 6022 6290 -1 256 215 34 184 chr9 119013119 119013352 -23258092 - L2 LINE L2 0 3313 3116 241 232 18 0 chr9 119014183 119014239 -23257205 - L2 LINE L2 -3 3310 3254 2314 85 0 3 chr9 119015588 119015899 -23255545 - AluSq SINE Alu 0 310 1 406 275 69 19 chr9 119015982 119016142 -23255302 - MIR SINE MIR -70 192 25 * 501 236 58 45 chr9 119016138 119016358 -23255086 - MIR SINE MIR -12 250 30 351 271 23 38 chr9 119016575 119016708 -23254736 - MIR SINE MIR -58 204 74 195 42 0 0 chr9 119017349 119017373 -23254071 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 303 297 45 32 chr9 119017616 119017771 -23253673 - MIR3 SINE MIR 0 208 52 350 316 19 25 chr9 119017807 119017965 -23253479 + MIR SINE MIR 8 164 -98 22 35 0 0 chr9 119018017 119018046 -23253398 + AT_rich Low_complexity Low_complexity 1 29 0 347 247 108 43 chr9 119018319 119018462 -23252982 + MIR SINE MIR 29 185 -68 1965 197 35 11 chr9 119018684 119018815 -23252629 - MLT1B LTR MaLR -5 385 259 363 44 0 0 chr9 119018815 119018860 -23252584 + (TC)n Simple_repeat Simple_repeat 1 45 0 1965 197 35 11 chr9 119018860 119019104 -23252340 - MLT1B LTR MaLR -131 259 1 231 295 152 0 chr9 119019588 119019700 -23251744 + MIR SINE MIR 79 207 -55 232 227 0 114 chr9 119020859 119020947 -23250497 - MIR3 SINE MIR -41 167 90 207 139 0 0 chr9 119021507 119021543 -23249901 + (GA)n Simple_repeat Simple_repeat 2 37 0 229 300 38 13 chr9 119022102 119022218 -23249226 - MIR SINE MIR -70 138 20 315 350 43 5 chr9 119023460 119023646 -23247798 + MIR SINE MIR 70 262 0 279 0 0 0 chr9 119023698 119023729 -23247715 + (TG)n Simple_repeat Simple_repeat 2 32 0 273 125 0 0 chr9 119023732 119023788 -23247656 + (TA)n Simple_repeat Simple_repeat 1 56 0 306 318 55 0 chr9 119023842 119023952 -23247492 + MIR3 SINE MIR 68 183 -25 21 0 0 0 chr9 119025887 119025908 -23245536 + AT_rich Low_complexity Low_complexity 1 21 0 1099 181 20 0 chr9 119026037 119026236 -23245208 - MER3 DNA MER1_type -1 208 6 411 268 59 26 chr9 119026312 119026465 -23244979 + MIR SINE MIR 105 262 0 233 240 0 0 chr9 119026547 119026597 -23244847 - L2 LINE L2 -219 3053 3004 565 268 40 31 chr9 119026672 119026896 -23244548 + L1MA9 LINE L1 6049 6274 -38 226 239 0 0 chr9 119027792 119027838 -23243606 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 251 170 0 0 chr9 119027838 119027885 -23243559 - L2 LINE L2 0 3313 3267 250 309 37 20 chr9 119027898 119028011 -23243433 - MIR SINE MIR -79 129 36 387 113 0 0 chr9 119028508 119028570 -23242874 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 326 331 44 16 chr9 119028600 119028848 -23242596 + L3 LINE CR1 1250 1504 -73 230 378 45 49 chr9 119028956 119029202 -23242242 - L2 LINE L2 -9 3263 3019 1698 238 58 38 chr9 119029251 119029755 -23241689 - LTR33 LTR ERVL -3 518 5 192 267 0 0 chr9 119030029 119030074 -23241370 - L2 LINE L2 -91 3181 3137 24 0 0 0 chr9 119030622 119030646 -23240798 + AT_rich Low_complexity Low_complexity 1 24 0 194 331 29 29 chr9 119030955 119031091 -23240353 - MIR3 SINE MIR -53 155 20 337 323 18 47 chr9 119031649 119031818 -23239626 + MIR SINE MIR 36 198 -64 417 310 57 26 chr9 119032005 119032234 -23239210 + MIR SINE MIR 4 239 -23 481 337 56 16 chr9 119032931 119033183 -23238261 + MIR SINE MIR 1 262 0 24 0 0 0 chr9 119033377 119033401 -23238043 + AT_rich Low_complexity Low_complexity 1 24 0 188 269 19 0 chr9 119034611 119034663 -23236781 + MIR3 SINE MIR 102 154 -54 289 324 59 69 chr9 119035939 119036143 -23235301 - L2 LINE L2 -30 3242 3041 511 123 0 12 chr9 119036492 119036573 -23234871 - MADE1 DNA Mariner 0 80 1 2437 186 19 2 chr9 119037169 119037594 -23233850 - MSTB1 LTR MaLR 0 432 1 258 309 126 35 chr9 119037879 119038109 -23233335 + MIR SINE MIR 12 262 0 239 229 0 12 chr9 119038309 119038392 -23233052 + GA-rich Low_complexity Low_complexity 3 84 0 325 376 24 5 chr9 119039078 119039283 -23232161 - MIR SINE MIR -18 244 36 186 43 0 0 chr9 119039701 119039724 -23231720 + (TTG)n Simple_repeat Simple_repeat 2 24 0 328 225 0 34 chr9 119040293 119040382 -23231062 - MER103 DNA DNA -71 95 10 310 371 100 0 chr9 119040551 119040691 -23230753 + MER91A DNA MER1_type 22 175 -21 181 339 0 17 chr9 119040759 119040818 -23230626 + MIR SINE MIR 77 134 -74 275 286 57 0 chr9 119041146 119041251 -23230193 - MIR SINE MIR -24 238 128 1759 174 3 16 chr9 119041906 119042216 -23229228 - AluJo SINE Alu -6 306 1 289 242 188 23 chr9 119043143 119043188 -23228256 + MIR SINE MIR 110 146 -116 783 250 23 34 chr9 119043188 119043452 -23227992 - MIR SINE MIR 0 262 2 289 242 188 23 chr9 119043452 119043534 -23227910 + MIR SINE MIR 146 258 -4 222 333 0 11 chr9 119044033 119044120 -23227324 - L2 LINE L2 -1 3271 3186 382 257 68 14 chr9 119044743 119044891 -23226553 + MIR SINE MIR 90 245 -17 326 314 37 23 chr9 119045264 119045472 -23225972 - MIR3 SINE MIR -55 207 3 299 300 64 21 chr9 119045982 119046122 -23225322 - L1ME LINE L1 -287 5834 5689 279 79 0 0 chr9 119046336 119046374 -23225070 + (TG)n Simple_repeat Simple_repeat 1 38 0 1098 155 103 0 chr9 119046415 119046609 -23224835 + MER20 DNA MER1_type 6 219 0 338 298 7 43 chr9 119046779 119046920 -23224524 + MIR3 SINE MIR 60 195 -13 197 341 0 0 chr9 119047345 119047427 -23224017 - MIR SINE MIR -91 117 36 23 33 0 0 chr9 119048060 119048090 -23223354 + AT_rich Low_complexity Low_complexity 1 30 0 471 220 177 14 chr9 119048226 119048367 -23223077 - MER5A DNA MER1_type 0 189 26 183 311 40 0 chr9 119048466 119048540 -23222904 - L2 LINE L2 -8 3264 3188 227 348 22 0 chr9 119048639 119048728 -23222716 - MIR SINE MIR -74 134 44 451 295 0 0 chr9 119048879 119048991 -23222453 + MIR3 SINE MIR 89 200 -8 238 304 98 0 chr9 119049552 119049664 -23221780 + MIR3 SINE MIR 58 180 -28 277 232 29 0 chr9 119049952 119050021 -23221423 - MER91A DNA MER1_type -13 183 113 220 342 144 18 chr9 119050116 119050227 -23221217 + L2 LINE L2 3136 3260 -12 186 258 0 0 chr9 119050231 119050293 -23221151 + GA-rich Low_complexity Low_complexity 3 64 0 239 301 107 0 chr9 119050400 119050503 -23220941 - MIR SINE MIR -70 192 79 903 200 33 38 chr9 119051575 119051785 -23219659 + MER3 DNA MER1_type 1 209 0 446 338 97 35 chr9 119051790 119052018 -23219426 - MIR SINE MIR -9 253 12 300 151 23 58 chr9 119052368 119052454 -23218990 + L1ME LINE L1 5618 5700 -421 189 311 0 0 chr9 119052462 119052507 -23218937 - L2 LINE L2 -4 3309 3265 439 297 125 5 chr9 119052659 119052851 -23218593 + MIR SINE MIR 6 220 -42 2968 94 17 0 chr9 119052858 119053273 -23218171 + L1PA13 LINE L1 5741 6162 -1 203 224 0 20 chr9 119053283 119053332 -23218112 + MIR SINE MIR 213 260 -2 186 209 0 0 chr9 119053450 119053493 -23217951 + (CATATA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr9 119053588 119053609 -23217835 + AT_rich Low_complexity Low_complexity 1 21 0 186 143 0 0 chr9 119053616 119053651 -23217793 + (TTA)n Simple_repeat Simple_repeat 1 35 0 232 321 24 48 chr9 119053708 119053876 -23217568 - MIR SINE MIR -59 203 40 2273 106 0 3 chr9 119054247 119054550 -23216894 - AluSg SINE Alu -8 302 1 299 308 0 8 chr9 119054882 119055012 -23216432 - L1ME LINE L1 -308 5813 5685 244 182 36 0 chr9 119055131 119055186 -23216258 + (CA)n Simple_repeat Simple_repeat 2 58 0 237 299 0 15 chr9 119055290 119055357 -23216087 - MIR SINE MIR -105 157 92 556 281 33 7 chr9 119056260 119056413 -23215031 + MIR SINE MIR 10 166 -96 403 165 18 18 chr9 119056945 119057054 -23214390 + (TGAA)n Simple_repeat Simple_repeat 3 111 0 316 39 77 0 chr9 119057987 119058039 -23213405 + (TTATA)n Simple_repeat Simple_repeat 5 60 0 342 241 0 37 chr9 119058044 119058122 -23213322 + (TA)n Simple_repeat Simple_repeat 1 75 -29 2206 107 7 0 chr9 119058122 119058420 -23213024 + AluSg SINE Alu 1 300 -10 342 241 0 37 chr9 119058420 119058449 -23212995 + (TA)n Simple_repeat Simple_repeat 75 104 0 267 322 15 25 chr9 119058509 119058655 -23212789 + MIR3 SINE MIR 15 158 -63 386 328 69 42 chr9 119058948 119059137 -23212307 - MIR SINE MIR -13 249 56 2556 150 18 2 chr9 119059322 119059775 -23211669 + L1MA7 LINE L1 5323 5782 -509 305 289 13 0 chr9 119059778 119059854 -23211590 + Tigger5 DNA MER2_type 1 77 -2246 323 87 0 0 chr9 119059878 119059924 -23211520 - Tigger5 DNA MER2_type -36 2287 2242 * 480 116 0 47 chr9 119059914 119060000 -23211444 + Tigger5 DNA MER2_type 2242 2323 0 2715 154 16 12 chr9 119060000 119060506 -23210938 + L1MA7 LINE L1 5784 6291 0 261 255 71 78 chr9 119061263 119061404 -23210040 + MIR3 SINE MIR 4 143 -65 217 294 220 9 chr9 119061845 119061954 -23209490 + MIR SINE MIR 20 151 -57 866 189 15 53 chr9 119061956 119062114 -23209330 - MER105 DNA DNA -2 202 52 923 202 72 0 chr9 119062114 119062307 -23209137 + MER3 DNA MER1_type 2 208 -1 866 189 15 53 chr9 119062307 119062354 -23209090 - MER105 DNA DNA -152 52 5 549 55 0 0 chr9 119063322 119063395 -23208049 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 346 262 12 0 chr9 119064400 119064484 -23206960 - MIR3 SINE MIR 0 208 124 216 235 15 103 chr9 119064502 119064570 -23206874 + L2 LINE L2 3251 3312 -1 285 276 13 0 chr9 119065262 119065338 -23206106 - MIR SINE MIR -111 151 75 284 239 22 33 chr9 119066211 119066303 -23205141 - L3 LINE CR1 -1 1576 1486 185 261 204 49 chr9 119066330 119066472 -23204972 - L3 LINE CR1 -180 1397 1234 756 258 44 8 chr9 119066746 119066998 -23204446 + Charlie1 DNA MER1_type 3 263 -2498 274 239 0 0 chr9 119066973 119067040 -23204404 + Charlie1 DNA MER1_type 2628 2694 -67 * 346 323 69 28 chr9 119067089 119067408 -23204036 - L2 LINE L2 -474 2840 2509 196 303 34 91 chr9 119067407 119067582 -23203862 - L3 LINE CR1 -340 1237 1073 * 320 376 85 12 chr9 119067931 119068096 -23203348 + MIR3 SINE MIR 20 196 -12 201 39 0 0 chr9 119068596 119068622 -23202822 + (TA)n Simple_repeat Simple_repeat 1 26 0 311 306 20 0 chr9 119068812 119068910 -23202534 + CT-rich Low_complexity Low_complexity 1 100 0 428 76 0 15 chr9 119069165 119069231 -23202213 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 2227 108 26 0 chr9 119069271 119069576 -23201868 - AluSq SINE Alu 0 313 1 315 368 24 24 chr9 119069579 119069745 -23201699 + L2 LINE L2 2690 2855 -459 379 288 37 25 chr9 119070058 119070221 -23201223 + MIR SINE MIR 98 262 0 236 275 87 0 chr9 119070647 119070716 -23200728 - L2 LINE L2 -10 3303 3229 579 217 147 0 chr9 119071430 119071559 -23199885 + FRAM SINE Alu 1 146 -30 270 384 8 8 chr9 119072162 119072287 -23199157 + MIR SINE MIR 20 144 -118 235 324 110 21 chr9 119073315 119073460 -23197984 + MIR3 SINE MIR 2 159 -49 2293 95 7 7 chr9 119073826 119074130 -23197314 + AluSq SINE Alu 1 304 -9 658 286 71 5 chr9 119074228 119074438 -23197006 - MIR SINE MIR -22 240 17 299 311 10 10 chr9 119075124 119075227 -23196217 + MIR3 SINE MIR 58 160 -48 2083 136 7 3 chr9 119075233 119075542 -23195902 - AluSg SINE Alu 0 310 1 449 219 51 148 chr9 119075542 119075738 -23195706 - MER5B DNA MER1_type -1 177 1 699 172 178 6 chr9 119075749 119075906 -23195538 + MER5A DNA MER1_type 6 189 0 249 311 97 10 chr9 119075974 119076077 -23195367 - L2 LINE L2 -13 3259 3148 277 200 31 15 chr9 119076164 119076229 -23195215 - L2 LINE L2 -1 3312 3247 408 275 9 9 chr9 119076824 119076933 -23194511 + MIR SINE MIR 40 148 -60 334 298 91 0 chr9 119077166 119077287 -23194157 - MIR SINE MIR -128 134 3 344 291 142 24 chr9 119077702 119077829 -23193615 - L2 LINE L2 -5 3267 3126 385 308 8 8 chr9 119077926 119078043 -23193401 + L2 LINE L2 3190 3306 -7 565 293 63 42 chr9 119078094 119078333 -23193111 - MIR SINE MIR -6 256 13 401 269 265 16 chr9 119078709 119078954 -23192490 - L2 LINE L2 0 3313 3008 204 235 20 0 chr9 119079449 119079500 -23191944 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 561 303 92 60 chr9 119079546 119079827 -23191617 - L2 LINE L2 -7 3265 2976 424 333 33 20 chr9 119079993 119080319 -23191125 - L1MC4a LINE L1 -335 5835 5529 253 376 16 24 chr9 119080696 119080821 -23190623 - L2 LINE L2 0 3272 3149 262 393 30 7 chr9 119080964 119081099 -23190345 - MIR SINE MIR -101 161 24 231 279 0 29 chr9 119081819 119081887 -23189557 - MIR SINE MIR -93 169 104 653 289 145 51 chr9 119082121 119082164 -23189280 - L2 LINE L2 -456 2858 2820 3644 168 21 3 chr9 119082164 119082843 -23188601 + L1PB4 LINE L1 5466 6156 0 653 289 145 51 chr9 119082843 119083363 -23188081 - L2 LINE L2 -494 2820 2242 435 270 69 6 chr9 119083893 119084052 -23187392 - MIR SINE MIR 0 262 94 1657 191 0 28 chr9 119084258 119084577 -23186867 + AluJo SINE Alu 1 310 -2 315 307 68 43 chr9 119085776 119085939 -23185505 + MIR3 SINE MIR 15 181 -27 210 312 40 48 chr9 119086193 119086318 -23185126 + L2 LINE L2 3149 3272 0 236 300 0 0 chr9 119086483 119086543 -23184901 + MIR3 SINE MIR 100 159 -49 476 339 68 45 chr9 119086559 119087200 -23184244 - L2 LINE L2 -1 3271 2546 363 220 0 0 chr9 119087485 119087576 -23183868 + (TG)n Simple_repeat Simple_repeat 2 92 0 393 293 49 0 chr9 119087954 119088077 -23183367 + MIR3 SINE MIR 66 194 -14 498 292 46 21 chr9 119088180 119088373 -23183071 - MIR3 SINE MIR 0 208 10 379 353 45 0 chr9 119090466 119090599 -23180845 - L2 LINE L2 0 3272 3134 2529 81 0 0 chr9 119092025 119092335 -23179109 + AluY SINE Alu 1 310 -1 26 0 0 0 chr9 119092584 119092610 -23178834 + AT_rich Low_complexity Low_complexity 1 26 0 501 289 37 147 chr9 119092915 119093668 -23177776 + L1ME2 LINE L1 19 688 -5431 735 306 87 38 chr9 119094032 119094587 -23176857 + L1ME2 LINE L1 2246 2827 -3302 357 304 85 55 chr9 119094905 119094943 -23176501 + L1ME2 LINE L1 4113 4148 -1981 2382 57 0 7 chr9 119094943 119095240 -23176204 + AluY SINE Alu 1 295 -16 357 304 85 55 chr9 119095240 119095402 -23176042 + L1ME2 LINE L1 4148 4319 -1810 347 257 9 51 chr9 119095511 119095725 -23175719 + L1ME2 LINE L1 4388 4592 -1537 357 284 107 98 chr9 119095883 119095899 -23175545 + L1ME2 LINE L1 4766 4780 -1349 2095 95 4 0 chr9 119095899 119096172 -23175272 + AluSp SINE Alu 1 274 -39 357 284 107 98 chr9 119096172 119096376 -23175068 + L1ME2 LINE L1 4780 4981 -1148 2064 133 3 0 chr9 119096376 119096694 -23174750 + AluSq SINE Alu 1 319 0 357 284 107 98 chr9 119096694 119096918 -23174526 + L1ME2 LINE L1 4981 5216 -913 513 273 70 84 chr9 119096941 119097642 -23173802 + L1ME2 LINE L1 5241 5931 -216 354 315 102 42 chr9 119098508 119098724 -23172720 + MIR SINE MIR 21 249 -13 225 0 0 0 chr9 119099412 119099437 -23172007 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1625 146 56 17 chr9 119099455 119099742 -23171702 + AluJb SINE Alu 1 298 -14 429 324 7 0 chr9 119100749 119100897 -23170547 + L3 LINE CR1 1317 1465 -112 22 35 0 0 chr9 119101982 119102011 -23169433 + AT_rich Low_complexity Low_complexity 1 29 0 433 319 48 11 chr9 119102350 119102538 -23168906 + MIR SINE MIR 68 262 0 189 292 156 42 chr9 119102795 119102891 -23168553 + MIR SINE MIR 156 262 0 2901 13 0 6 chr9 119104827 119105145 -23166299 + AluYb8 SINE Alu 1 316 -2 23 0 0 0 chr9 119105902 119105925 -23165519 + AT_rich Low_complexity Low_complexity 1 23 0 427 287 77 43 chr9 119106332 119106541 -23164903 - MIR SINE MIR 0 262 47 221 298 95 24 chr9 119106629 119106713 -23164731 - L2 LINE L2 -30 3242 3153 253 193 284 28 chr9 119107408 119107517 -23163927 - MIR SINE MIR -13 249 113 924 182 29 0 chr9 119107527 119107697 -23163747 + MER3 DNA MER1_type 2 129 -80 193 254 63 32 chr9 119107711 119107774 -23163670 - MIR SINE MIR -150 112 48 273 270 11 22 chr9 119108406 119108495 -23162949 - MIR SINE MIR -63 145 58 416 243 21 62 chr9 119108749 119108893 -23162551 - L2 LINE L2 0 3313 3176 287 311 20 80 chr9 119108992 119109143 -23162301 - MIR SINE MIR -113 149 8 218 272 24 136 chr9 119109711 119109836 -23161608 + L2 LINE L2 3141 3251 -21 1104 168 10 0 chr9 119110157 119111499 -23159945 + ALR/Alpha Satellite centromeric 1 1355 -13 1156 159 8 1 chr9 119111512 119112518 -23158926 + ALR/Alpha Satellite centromeric 1 1012 -13 1141 158 1 0 chr9 119112531 119113129 -23158315 + ALR/Alpha Satellite centromeric 1 598 0 1156 167 5 0 chr9 119113231 119116808 -23154636 + ALR/Alpha Satellite centromeric 1 3592 -13 1123 161 5 0 chr9 119116821 119117488 -23153956 + ALR/Alpha Satellite centromeric 1 670 -13 955 185 0 3 chr9 119117501 119117751 -23153693 + ALR/Alpha Satellite centromeric 1 249 -8 1104 181 5 3 chr9 119117852 119120356 -23151088 + ALR/Alpha Satellite centromeric 1 2511 0 1134 165 7 2 chr9 119120491 119123857 -23147587 + ALR/Alpha Satellite centromeric 1 3380 -44 273 346 44 15 chr9 119123968 119124104 -23147340 + MIR3 SINE MIR 30 169 -39 1064 244 28 0 chr9 119124460 119124677 -23146767 + MER58A DNA MER1_type 2 224 0 1194 122 0 0 chr9 119124799 119124963 -23146481 + AluSg/x SINE Alu 135 298 -14 358 275 150 0 chr9 119125138 119125258 -23146186 - MIR SINE MIR -67 141 4 739 299 81 58 chr9 119125952 119126387 -23145057 + LTR67 LTR ERVL 109 553 -4 272 228 16 16 chr9 119126798 119126925 -23144519 + CT-rich Low_complexity Low_complexity 1 127 0 283 216 46 37 chr9 119127644 119127731 -23143713 + MIR3 SINE MIR 103 191 -17 348 279 93 21 chr9 119128663 119128803 -23142641 + MIR SINE MIR 102 251 -11 2113 116 33 7 chr9 119128838 119129141 -23142303 - AluSx SINE Alu -1 311 1 553 259 84 6 chr9 119129169 119129335 -23142109 - MIR SINE MIR -78 184 6 429 344 45 22 chr9 119129337 119129561 -23141883 - MIR SINE MIR -12 250 22 466 313 51 18 chr9 119129883 119130100 -23141344 + MIR SINE MIR 34 257 -5 330 335 43 11 chr9 119130141 119130326 -23141118 + MIR3 SINE MIR 9 199 -9 365 313 124 74 chr9 119131318 119131736 -23139708 - L2 LINE L2 0 3272 2834 908 222 92 10 chr9 119131889 119132096 -23139348 + MER58A DNA MER1_type 1 224 0 944 268 99 3 chr9 119132115 119132429 -23139015 - MER2 DNA MER2_type 0 344 1 360 311 72 57 chr9 119132976 119133185 -23138259 - MIR SINE MIR -19 243 32 1719 184 36 0 chr9 119133256 119133565 -23137879 + MER2 DNA MER2_type 1 320 -25 26 0 0 0 chr9 119133649 119133675 -23137769 + AT_rich Low_complexity Low_complexity 1 26 0 310 264 191 34 chr9 119133692 119133870 -23137574 - MIR SINE MIR -54 208 3 276 257 14 54 chr9 119135298 119135372 -23136072 - L2 LINE L2 0 3272 3202 189 309 0 0 chr9 119135374 119135429 -23136015 + MIR SINE MIR 207 261 -1 199 389 33 0 chr9 119135463 119135553 -23135891 + L3 LINE CR1 1426 1518 -59 477 382 47 54 chr9 119135772 119136384 -23135060 + L2 LINE L2 2227 2834 -480 1796 133 4 0 chr9 119136384 119136681 -23134763 - AluSc SINE Alu 0 342 45 385 301 106 56 chr9 119136752 119137074 -23134370 + L2 LINE L2 2935 3272 0 250 286 113 25 chr9 119138045 119138248 -23133196 - MIR SINE MIR -14 248 28 427 264 65 19 chr9 119138340 119138495 -23132949 + MIR SINE MIR 76 237 -25 254 322 33 25 chr9 119138824 119138945 -23132499 - L3 LINE CR1 -90 1487 1366 193 231 19 37 chr9 119138926 119139005 -23132439 - L3b LINE CR1 -330 1253 1178 * 2011 137 0 20 chr9 119139347 119139653 -23131791 + AluSg SINE Alu 1 300 -10 336 148 0 0 chr9 119139694 119139755 -23131689 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 320 227 45 11 chr9 119140525 119140613 -23130831 + L1MC4 LINE L1 6613 6703 -1339 233 90 0 119 chr9 119140619 119140686 -23130758 - L1MCa LINE L1 -4362 2064 2006 402 129 0 74 chr9 119140692 119140855 -23130589 + (TA)n Simple_repeat Simple_repeat 1 151 0 553 296 126 35 chr9 119141113 119141430 -23130014 - L2 LINE L2 -1 3312 2967 499 317 43 0 chr9 119141865 119142029 -23129415 - MIR3 SINE MIR -10 198 28 287 177 16 0 chr9 119142069 119142131 -23129313 + CT-rich Low_complexity Low_complexity 2 64 0 24 32 0 0 chr9 119142839 119142870 -23128574 + AT_rich Low_complexity Low_complexity 1 31 0 63 0 0 0 chr9 119143218 119143281 -23128163 + AT_rich Low_complexity Low_complexity 1 63 0 216 67 0 0 chr9 119143516 119143546 -23127898 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1291 309 98 53 chr9 119143552 119144634 -23126810 - L2 LINE L2 -445 2869 1739 2123 93 21 4 chr9 119145088 119145390 -23126054 + AluSp SINE Alu 1 307 0 2405 96 0 6 chr9 119146685 119146999 -23124445 + AluSx SINE Alu 1 312 0 223 263 138 12 chr9 119147273 119147353 -23124091 + L2 LINE L2 3183 3272 0 394 322 51 81 chr9 119147812 119148222 -23123222 - L2 LINE L2 -2 3270 2873 2235 125 0 0 chr9 119148264 119148569 -23122875 - AluSx SINE Alu -6 306 2 427 323 8 8 chr9 119149338 119149471 -23121973 - MIR SINE MIR -113 149 17 227 146 0 0 chr9 119150088 119150129 -23121315 - L2 LINE L2 0 3313 3273 223 291 0 0 chr9 119150137 119150192 -23121252 + (TG)n Simple_repeat Simple_repeat 2 56 0 269 285 25 19 chr9 119150635 119150793 -23120651 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 254 298 16 50 chr9 119151107 119151228 -23120216 + MIR SINE MIR 33 149 -59 278 324 16 87 chr9 119151246 119151431 -23120013 - MIR SINE MIR -71 191 20 1678 180 23 7 chr9 119151646 119151988 -23119456 - AluJb SINE Alu 0 312 1 229 252 88 81 chr9 119152363 119152527 -23118917 - MIR3 SINE MIR -71 137 2 619 183 14 70 chr9 119152563 119152705 -23118739 - MER94 DNA DNA 0 134 1 301 345 52 17 chr9 119153194 119153368 -23118076 - MIR3 SINE MIR -6 202 23 424 276 68 13 chr9 119153436 119153599 -23117845 + MIR SINE MIR 18 186 -64 1799 171 2 89 chr9 119153632 119154046 -23117398 - L1MB1 LINE L1 0 6168 5791 430 284 0 37 chr9 119154736 119154870 -23116574 + MIR3 SINE MIR 72 200 -8 219 167 0 0 chr9 119155460 119155502 -23115942 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 220 336 117 8 chr9 119155586 119155714 -23115730 + L2 LINE L2 3123 3264 -8 228 67 0 0 chr9 119156590 119156620 -23114824 + (CA)n Simple_repeat Simple_repeat 1 30 0 329 320 150 13 chr9 119158089 119158323 -23113121 + L3 LINE CR1 1311 1576 -1 2131 121 10 7 chr9 119158436 119158742 -23112702 + AluSq SINE Alu 1 307 -6 197 274 123 0 chr9 119158934 119159007 -23112437 + MIR SINE MIR 88 169 -93 317 277 21 0 chr9 119159705 119159799 -23111645 - MIR SINE MIR -109 153 58 2133 146 7 0 chr9 119160308 119160616 -23110828 - AluSx SINE Alu -2 310 1 284 287 176 7 chr9 119161107 119161243 -23110201 - MIR SINE MIR -16 246 88 346 253 36 53 chr9 119161988 119162142 -23109302 + MIR SINE MIR 7 154 -61 189 0 0 0 chr9 119162297 119162318 -23109126 + (T)n Simple_repeat Simple_repeat 1 21 0 286 283 123 43 chr9 119162805 119162992 -23108452 + MIR SINE MIR 23 224 -38 267 161 0 0 chr9 119163506 119163562 -23107882 + T-rich Low_complexity Low_complexity 1 56 0 2466 82 0 0 chr9 119164042 119164346 -23107098 + AluY SINE Alu 1 304 -7 738 222 62 10 chr9 119164890 119165084 -23106360 + MER3 DNA MER1_type 6 209 0 506 281 107 0 chr9 119165095 119165273 -23106171 + MIR SINE MIR 53 249 -13 2367 98 13 10 chr9 119165302 119165609 -23105835 - AluSc SINE Alu -1 308 1 196 324 29 7 chr9 119165950 119166086 -23105358 + L2 LINE L2 2945 3083 -189 222 295 26 13 chr9 119166603 119166681 -23104763 + L2 LINE L2 3232 3310 -3 245 312 11 11 chr9 119166923 119167016 -23104428 + GA-rich Low_complexity Low_complexity 1 93 0 241 246 236 13 chr9 119167156 119167271 -23104173 - MIR SINE MIR -72 190 54 278 305 126 20 chr9 119167368 119167519 -23103925 - MIR SINE MIR -47 215 49 186 136 91 23 chr9 119169569 119169613 -23101831 + L2 LINE L2 3267 3313 0 186 138 0 0 chr9 119170842 119170871 -23100573 + MIR SINE MIR 115 143 -65 261 75 57 0 chr9 119171911 119171964 -23099480 + (TG)n Simple_repeat Simple_repeat 2 57 0 2457 74 0 0 chr9 119172207 119172503 -23098941 - AluY SINE Alu -15 296 1 456 294 77 0 chr9 119172606 119172776 -23098668 + MER117 DNA MER1_type 1 183 -14 257 289 179 19 chr9 119173120 119173276 -23098168 + MIR SINE MIR 20 200 -62 1971 118 62 3 chr9 119173321 119173610 -23097834 + AluSq SINE Alu 1 306 -7 267 54 0 0 chr9 119173955 119173992 -23097452 + (TG)n Simple_repeat Simple_repeat 2 38 0 271 339 16 16 chr9 119174537 119174664 -23096780 + MIR3 SINE MIR 76 202 -6 183 80 0 0 chr9 119174722 119174747 -23096697 + (GA)n Simple_repeat Simple_repeat 2 26 0 215 360 45 0 chr9 119174999 119175088 -23096356 - MIR3 SINE MIR -15 193 101 762 299 69 0 chr9 119175370 119175587 -23095857 + MIR SINE MIR 15 246 -16 212 83 0 28 chr9 119175589 119175625 -23095819 + (CTG)n Simple_repeat Simple_repeat 1 35 0 236 248 224 32 chr9 119176468 119176593 -23094851 - MIR3 SINE MIR -33 175 27 31 68 0 0 chr9 119177362 119177421 -23094023 + AT_rich Low_complexity Low_complexity 1 59 0 2616 156 21 8 chr9 119177672 119178147 -23093297 - L1MB1 LINE L1 0 6168 5688 240 200 31 0 chr9 119179993 119180058 -23091386 + L1MD3 LINE L1 7929 7995 0 23 0 0 0 chr9 119180433 119180456 -23090988 + AT_rich Low_complexity Low_complexity 1 23 0 214 309 136 0 chr9 119181473 119181554 -23089890 + L2 LINE L2 3181 3272 0 315 85 0 0 chr9 119181680 119181727 -23089717 + (TG)n Simple_repeat Simple_repeat 2 48 0 252 260 163 8 chr9 119181954 119182077 -23089367 + L2 LINE L2 2900 3041 -231 427 301 20 65 chr9 119183028 119183274 -23088170 - MIR SINE MIR -26 236 2 198 0 0 0 chr9 119185325 119185347 -23086097 + (A)n Simple_repeat Simple_repeat 1 22 0 285 336 0 0 chr9 119186385 119186492 -23084952 + MIR SINE MIR 47 153 -55 430 325 36 6 chr9 119186785 119186951 -23084493 + MIR SINE MIR 20 190 -72 236 240 33 116 chr9 119187086 119187207 -23084237 - MIR3 SINE MIR -17 191 81 457 258 16 16 chr9 119187829 119187957 -23083487 + MIR3 SINE MIR 74 201 -7 212 117 50 17 chr9 119188730 119188790 -23082654 + CT-rich Low_complexity Low_complexity 1 62 0 194 193 18 0 chr9 119189268 119189325 -23082119 + CT-rich Low_complexity Low_complexity 4 61 0 548 299 14 12 chr9 119189763 119189996 -23081448 - L1ME LINE L1 -507 5655 5428 437 367 6 0 chr9 119190000 119190169 -23081275 - MIR3 SINE MIR -3 205 36 523 300 69 36 chr9 119190188 119190465 -23080979 + Charlie8 DNA MER1_type 1 286 -2131 442 262 76 31 chr9 119191441 119191666 -23079778 + MIR SINE MIR 1 235 -27 239 277 102 29 chr9 119191813 119191950 -23079494 - MER103 DNA DNA -17 149 3 410 365 62 38 chr9 119192074 119192093 -23079351 + L2 LINE L2 2851 2868 -445 1848 167 3 0 chr9 119192093 119192425 -23079019 - AluSx SINE Alu 0 333 1 410 365 62 38 chr9 119192425 119192856 -23078588 + L2 LINE L2 2868 3313 0 450 279 16 5 chr9 119192881 119193044 -23078400 - MIR SINE MIR -65 143 15 208 180 0 20 chr9 119193719 119193769 -23077675 + A-rich Low_complexity Low_complexity 4 52 0 366 319 69 14 chr9 119194175 119194319 -23077125 + MIR SINE MIR 90 241 -21 2122 94 7 24 chr9 119194826 119195150 -23076294 - AluSq SINE Alu 0 319 1 314 250 40 10 chr9 119195151 119195251 -23076193 - MIR SINE MIR -6 256 154 243 305 78 16 chr9 119195322 119195450 -23075994 - MIR SINE MIR -109 153 18 394 155 12 36 chr9 119196054 119196138 -23075306 + L2 LINE L2 3232 3313 0 200 264 19 0 chr9 119196306 119196359 -23075085 + L3 LINE CR1 1405 1458 -119 192 377 22 51 chr9 119196356 119196494 -23074950 - L2 LINE L2 -2 3270 3137 * 193 303 55 37 chr9 119197655 119197764 -23073680 - MIR3 SINE MIR -17 191 81 254 343 145 12 chr9 119198001 119198173 -23073271 + MIR SINE MIR 2 196 -66 278 232 0 29 chr9 119198725 119198794 -23072650 + GA-rich Low_complexity Low_complexity 2 68 0 499 268 33 0 chr9 119198847 119198986 -23072458 - MIR SINE MIR -63 145 32 3127 100 2 24 chr9 119199765 119200226 -23071218 - L1PA13 LINE L1 -4 6159 5709 301 316 51 0 chr9 119200635 119200733 -23070711 - L2 LINE L2 -1 3271 3169 1026 232 57 74 chr9 119201172 119201508 -23069936 - LTR16C LTR ERVL -76 415 86 574 213 66 105 chr9 119202309 119202567 -23068877 + L2 LINE L2 3065 3312 -1 200 180 0 20 chr9 119202624 119202674 -23068770 + GA-rich Low_complexity Low_complexity 1 49 0 186 327 40 20 chr9 119202701 119202802 -23068642 - MIR SINE MIR -41 221 119 197 338 154 15 chr9 119202865 119203066 -23068378 + MIR SINE MIR 18 246 -16 209 286 60 36 chr9 119203728 119203812 -23067632 + MIR3 SINE MIR 95 180 -28 660 350 8 16 chr9 119204444 119204687 -23066757 + MIR SINE MIR 17 257 -5 433 319 127 19 chr9 119205966 119206280 -23065164 + L2 LINE L2 2459 2806 -508 393 303 61 50 chr9 119206354 119206631 -23064813 + L2 LINE L2 2976 3255 -17 374 337 12 18 chr9 119206630 119206793 -23064651 - MIR3 SINE MIR -11 197 36 * 509 269 64 12 chr9 119207555 119207726 -23063718 + MIR SINE MIR 29 208 -54 310 215 123 0 chr9 119207726 119207791 -23063653 - MER91B DNA MER1_type -117 73 1 2041 99 0 0 chr9 119207934 119208226 -23063218 - L1P LINE L1 -1193 4953 4662 985 47 8 16 chr9 119208226 119208353 -23063091 + L1PA8 LINE L1 6047 6172 0 559 244 16 0 chr9 119208488 119208611 -23062833 + MER3 DNA MER1_type 1 125 -84 1791 230 86 71 chr9 119209094 119209767 -23061677 + MER45R DNA AcHobo 1 683 -898 1689 172 6 6 chr9 119209782 119210102 -23061342 - L1M2 LINE L1 -678 5613 5294 869 234 39 25 chr9 119211525 119211860 -23059584 + MER4C LTR ERV1 166 465 0 660 173 64 13 chr9 119212066 119212222 -23059222 - Charlie2a DNA MER1_type 0 2862 2699 550 229 37 11 chr9 119212213 119212401 -23059043 - Charlie2a DNA MER1_type -1203 1659 1467 * 376 239 9 28 chr9 119212459 119212568 -23058876 - Charlie2b DNA MER1_type -2110 672 566 617 280 138 13 chr9 119212611 119212843 -23058601 - Charlie2b DNA MER1_type -2513 269 9 203 372 95 47 chr9 119214219 119214515 -23056929 + L2 LINE L2 2963 3272 0 513 282 114 37 chr9 119215589 119216025 -23055419 + L2 LINE L2 2753 3235 -78 208 195 0 24 chr9 119216133 119216174 -23055270 - L2 LINE L2 -15 3257 3218 224 307 73 138 chr9 119216988 119217206 -23054238 - L3 LINE CR1 -113 1464 1261 496 317 142 37 chr9 119217365 119217879 -23053565 - L3 LINE CR1 -322 1255 688 2067 91 0 0 chr9 119217971 119218225 -23053219 + AluSx SINE Alu 1 254 -58 393 274 236 29 chr9 119218646 119218854 -23052590 + MIR SINE MIR 2 252 -10 264 241 29 124 chr9 119220730 119220867 -23050577 + L2 LINE L2 3136 3259 -13 27 62 0 0 chr9 119221121 119221169 -23050275 + AT_rich Low_complexity Low_complexity 1 48 0 286 287 32 0 chr9 119221522 119221616 -23049828 + MIR SINE MIR 110 206 -56 454 182 0 0 chr9 119222534 119222611 -23048833 - MLT1G1 LTR MaLR -518 77 1 884 240 115 105 chr9 119222616 119223258 -23048186 - L2 LINE L2 -32 3281 2665 298 122 0 20 chr9 119223258 119223307 -23048137 - MLT2B2 LTR ERVL 0 515 468 * 4013 130 308 21 chr9 119223304 119223921 -23047523 - Tigger3b DNA MER2_type -1797 1231 792 2045 112 38 3 chr9 119223921 119224252 -23047192 - AluSx SINE Alu 0 341 1 4013 130 308 21 chr9 119224252 119224534 -23046910 - Tigger3b DNA MER2_type -2236 792 71 539 248 9 0 chr9 119224534 119224639 -23046805 - AluJ SINE Alu -75 237 132 662 198 112 0 chr9 119224647 119224763 -23046681 - AluJ SINE Alu -173 129 1 238 269 0 0 chr9 119224764 119224816 -23046628 - Tigger3b DNA MER2_type -1153 78 27 243 125 0 0 chr9 119224875 119224915 -23046529 + (CA)n Simple_repeat Simple_repeat 1 40 0 210 242 15 30 chr9 119225223 119225289 -23046155 + GA-rich Low_complexity Low_complexity 2 66 0 230 309 37 0 chr9 119225660 119225741 -23045703 + MIR SINE MIR 109 192 -70 2490 216 32 66 chr9 119225785 119226470 -23044974 - LTR8 LTR ERV1 0 691 30 1604 177 7 27 chr9 119227040 119227339 -23044105 + AluJb SINE Alu 11 303 -9 1921 161 0 10 chr9 119227582 119227881 -23043563 - AluJo SINE Alu -16 296 1 621 285 30 33 chr9 119228232 119228502 -23042942 - L1MC4a LINE L1 -1876 5932 5664 181 264 121 11 chr9 119228652 119228743 -23042701 - MIR3 SINE MIR -27 181 81 711 300 123 22 chr9 119228848 119229077 -23042367 + LTR16C LTR ERVL 86 367 -124 1854 139 87 63 chr9 119229077 119229391 -23042053 + THE1C LTR MaLR 1 327 -48 1879 108 64 20 chr9 119229391 119229686 -23041758 + AluSq SINE Alu 5 312 -1 1854 139 87 63 chr9 119229686 119229737 -23041707 + THE1C LTR MaLR 327 375 0 711 300 123 22 chr9 119229737 119229874 -23041570 + LTR16C LTR ERVL 367 489 -2 2136 134 40 11 chr9 119230592 119230943 -23040501 - MER46B DNA MER2_type 0 236 1 344 281 35 18 chr9 119231143 119231257 -23040187 + MIR SINE MIR 30 145 -63 1042 170 0 13 chr9 119231262 119231521 -23039923 + AluJb SINE Alu 2 305 -7 356 303 49 29 chr9 119232340 119232555 -23038889 - MIR SINE MIR 0 262 44 225 237 17 0 chr9 119232615 119232674 -23038770 + L1ME4a LINE L1 5707 5766 -355 315 0 0 0 chr9 119232811 119232846 -23038598 + (TG)n Simple_repeat Simple_repeat 1 35 0 255 331 25 16 chr9 119232858 119232979 -23038465 - L2 LINE L2 -55 3258 3137 627 199 180 6 chr9 119233037 119233198 -23038246 - MER53 DNA DNA 0 189 1 332 214 99 30 chr9 119233284 119233415 -23038029 + L1ME4a LINE L1 5982 6121 0 28 48 0 0 chr9 119233811 119233853 -23037591 + AT_rich Low_complexity Low_complexity 1 42 0 405 275 33 6 chr9 119234069 119234218 -23037226 - MIR SINE MIR -2 260 18 229 228 38 25 chr9 119234230 119234309 -23037135 - L1MC5 LINE L1 -35 7926 7847 496 323 66 15 chr9 119234391 119234589 -23036855 + MIR SINE MIR 41 248 -14 319 249 108 11 chr9 119235282 119235420 -23036024 - MIR SINE MIR -54 208 58 198 167 0 0 chr9 119236014 119236050 -23035394 + CT-rich Low_complexity Low_complexity 1 36 0 1807 158 24 10 chr9 119236056 119236234 -23035210 - AluJo SINE Alu -9 303 118 459 0 0 0 chr9 119236234 119236285 -23035159 + (TG)n Simple_repeat Simple_repeat 2 52 0 1807 158 24 10 chr9 119236285 119236404 -23035040 - AluJo SINE Alu -194 118 2 198 302 28 89 chr9 119236545 119236724 -23034720 - L2 LINE L2 -156 3116 2949 232 311 0 0 chr9 119236747 119236808 -23034636 + CT-rich Low_complexity Low_complexity 1 61 0 1765 131 3 108 chr9 119236835 119236969 -23034475 + AluSp SINE Alu 13 159 -154 2453 98 25 0 chr9 119236969 119237295 -23034149 + L1PA10 LINE L1 5816 6149 -19 1765 131 3 108 chr9 119237295 119237495 -23033949 + AluSp SINE Alu 159 312 -1 880 218 0 36 chr9 119237719 119237912 -23033532 - AluJb SINE Alu -12 300 115 1945 156 0 0 chr9 119238039 119238328 -23033116 + AluJb SINE Alu 1 289 -23 262 267 65 57 chr9 119238465 119238765 -23032679 + L2 LINE L2 2883 3184 -129 236 321 0 0 chr9 119238930 119238983 -23032461 - L2 LINE L2 -11 3261 3209 333 275 176 43 chr9 119239029 119239262 -23032182 + L2 LINE L2 3030 3293 -20 1504 199 30 3 chr9 119239337 119239639 -23031805 + AluJb SINE Alu 1 310 -2 243 125 0 0 chr9 119240103 119240143 -23031301 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 522 133 36 0 chr9 119240216 119240299 -23031145 + MLT1B LTR MaLR 4 89 -301 2100 114 4 0 chr9 119240301 119240619 -23030825 - AluSx SINE Alu 0 319 1 240 313 137 39 chr9 119240627 119240883 -23030561 - MLT1K LTR MaLR -158 430 150 1125 195 27 36 chr9 119241349 119241570 -23029874 + MER20 DNA MER1_type 1 219 0 429 250 0 10 chr9 119241715 119241819 -23029625 - MIR SINE MIR -14 248 146 2190 109 7 0 chr9 119242586 119242889 -23028555 + AluSg SINE Alu 1 305 -5 197 119 24 0 chr9 119242901 119242943 -23028501 + CT-rich Low_complexity Low_complexity 2 44 0 318 26 0 0 chr9 119242944 119242983 -23028461 + (CA)n Simple_repeat Simple_repeat 2 40 0 2926 214 208 26 chr9 119242992 119243999 -23027445 + L1MC4 LINE L1 6709 7898 -144 205 353 12 0 chr9 119244419 119244504 -23026940 - MIR SINE MIR -118 144 59 1825 138 46 89 chr9 119245462 119245854 -23025590 + THE1C LTR MaLR 1 375 0 225 178 0 0 chr9 119246028 119246073 -23025371 + GA-rich Low_complexity Low_complexity 1 45 0 881 284 105 21 chr9 119246389 119246819 -23024625 + MLT1L LTR MaLR 150 615 0 336 336 51 68 chr9 119246835 119246971 -23024473 + L2 LINE L2 2809 2941 -372 2352 105 0 3 chr9 119246971 119247276 -23024168 - AluSx SINE Alu -8 304 1 336 336 51 68 chr9 119247276 119247374 -23024070 + L2 LINE L2 2941 3039 -274 1020 292 4 4 chr9 119247410 119247667 -23023777 + MIR SINE MIR 6 262 0 232 313 52 78 chr9 119247667 119247782 -23023662 + L2 LINE L2 3115 3226 -46 257 277 0 0 chr9 119247836 119247901 -23023543 + (GAATG)n Simple_repeat Simple_repeat 3 67 0 532 200 0 24 chr9 119248097 119248222 -23023222 - L1MB7 LINE L1 -9 6175 6054 205 327 35 80 chr9 119248497 119248610 -23022834 + L2 LINE L2 3137 3244 -28 368 88 18 0 chr9 119249545 119249602 -23021842 + (TG)n Simple_repeat Simple_repeat 1 58 0 226 304 54 22 chr9 119249686 119249778 -23021666 - MIR SINE MIR -160 102 8 387 181 11 32 chr9 119249878 119249972 -23021472 + L1MD3 LINE L1 7781 7872 -123 832 219 78 44 chr9 119249975 119250245 -23021199 + MLT2D LTR ERVL 1 279 -135 683 161 25 0 chr9 119250246 119250364 -23021080 + L1MD3 LINE L1 7875 7995 0 5028 125 69 38 chr9 119250519 119251432 -23020012 - Tigger3b DNA MER2_type 0 1231 291 756 203 8 8 chr9 119251432 119251565 -23019879 + AluJo SINE Alu 2 134 -178 1772 187 0 0 chr9 119251565 119251865 -23019579 - Tigger3b DNA MER2_type -929 302 3 225 261 98 33 chr9 119251915 119252007 -23019437 + L2 LINE L2 3185 3282 -31 55 62 0 0 chr9 119252260 119252357 -23019087 + AT_rich Low_complexity Low_complexity 1 97 0 497 272 39 91 chr9 119252365 119252619 -23018825 - MIR SINE MIR -14 248 8 257 366 64 23 chr9 119252609 119252781 -23018663 + L2 LINE L2 3089 3267 -5 * 199 263 253 0 chr9 119253311 119253406 -23018038 + MIR3 SINE MIR 40 158 -50 345 241 148 43 chr9 119253579 119253741 -23017703 + MIR SINE MIR 66 244 -18 185 384 72 16 chr9 119253779 119253904 -23017540 + L2 LINE L2 3137 3268 -4 309 208 0 65 chr9 119254076 119254153 -23017291 - L2 LINE L2 0 3313 3242 263 331 23 90 chr9 119254289 119254588 -23016856 - L2 LINE L2 -388 2926 2648 374 293 335 0 chr9 119255100 119255291 -23016153 + MIR SINE MIR 2 256 -6 1044 157 0 8 chr9 119255304 119255633 -23015811 + (TGG)n Simple_repeat Simple_repeat 1 326 0 1998 132 0 0 chr9 119255836 119256108 -23015336 + AluSx SINE Alu 3 274 -38 585 42 0 0 chr9 119256108 119256180 -23015264 + (CATA)n Simple_repeat Simple_repeat 3 74 0 288 317 71 60 chr9 119256883 119257066 -23014378 - MIR SINE MIR -57 205 21 317 297 152 14 chr9 119257134 119257279 -23014165 + MIR SINE MIR 33 197 -65 314 271 78 54 chr9 119257279 119257408 -23014036 + L2 LINE L2 3182 3313 0 216 250 0 0 chr9 119257428 119257480 -23013964 + MIR SINE MIR 205 256 -6 353 293 65 8 chr9 119258020 119258143 -23013301 - MIR SINE MIR -13 249 120 2290 113 3 0 chr9 119258198 119258509 -23012935 - AluSx SINE Alu 0 312 1 2186 139 0 0 chr9 119258965 119259275 -23012169 + AluSx SINE Alu 1 310 -2 31 26 0 0 chr9 119259474 119259512 -23011932 + AT_rich Low_complexity Low_complexity 1 38 0 361 267 42 42 chr9 119260040 119260160 -23011284 - L2 LINE L2 -2 3270 3151 198 269 11 43 chr9 119260428 119260521 -23010923 - L2 LINE L2 -502 2812 2723 283 355 73 33 chr9 119260651 119260924 -23010520 - L2 LINE L2 -833 2481 2198 206 335 142 57 chr9 119261039 119261251 -23010193 + L2 LINE L2 3035 3264 -8 493 286 94 12 chr9 119261323 119261385 -23010059 - MIR SINE MIR -76 186 130 2312 103 0 0 chr9 119261385 119261687 -23009757 + AluSx SINE Alu 9 310 -2 493 286 94 12 chr9 119261687 119261795 -23009649 - MIR SINE MIR -132 130 2 3261 81 0 0 chr9 119262529 119262937 -23008507 - L1PA8 LINE L1 -3 6169 5762 307 257 59 30 chr9 119263293 119263394 -23008050 - L1ME LINE L1 -519 5602 5499 480 239 24 84 chr9 119263504 119263671 -23007773 - L1MA10 LINE L1 -39 6295 6139 372 287 43 0 chr9 119263683 119263798 -23007646 - L1ME3 LINE L1 -96 6066 5947 277 319 85 27 chr9 119263836 119264024 -23007420 - L3 LINE CR1 -400 1177 979 238 283 150 25 chr9 119264441 119264561 -23006883 - MIR3 SINE MIR -9 199 65 * 534 290 51 23 chr9 119264541 119264717 -23006727 + MIR SINE MIR 6 186 -76 471 369 0 0 chr9 119264917 119265074 -23006370 + L2 LINE L2 3116 3272 0 1858 258 21 40 chr9 119265193 119265762 -23005682 - MER74A LTR ERVL 0 558 1 354 299 142 41 chr9 119265939 119266136 -23005308 + MIR SINE MIR 46 262 0 247 317 37 0 chr9 119266469 119266551 -23004893 - MIR SINE MIR -70 192 108 304 250 0 40 chr9 119267445 119267521 -23003923 + MER5B DNA MER1_type 75 147 -31 259 332 60 36 chr9 119268199 119268436 -23003008 - MIR SINE MIR -6 256 15 596 279 51 15 chr9 119268569 119268766 -23002678 + MIR SINE MIR 46 249 -13 234 297 66 11 chr9 119268806 119268897 -23002547 + L3 LINE CR1 1407 1502 -75 310 309 175 53 chr9 119270085 119270680 -23000764 + L2 LINE L2 2614 3293 -20 236 345 36 24 chr9 119271986 119272154 -22999290 + MIR SINE MIR 3 172 -90 226 229 21 0 chr9 119272416 119272464 -22998980 + CT-rich Low_complexity Low_complexity 1 49 0 197 308 97 101 chr9 119272468 119272715 -22998729 - L2 LINE L2 -10 3262 3017 386 295 32 83 chr9 119272853 119273070 -22998374 - MIR SINE MIR 0 262 57 394 344 39 0 chr9 119273126 119273254 -22998190 + MIR3 SINE MIR 62 194 -14 198 267 100 0 chr9 119273985 119274045 -22997399 - L2 LINE L2 0 3272 3207 493 295 29 29 chr9 119274090 119274263 -22997181 + MIR SINE MIR 20 192 -70 205 148 56 56 chr9 119274596 119274650 -22996794 - L2 LINE L2 -341 2973 2920 288 323 56 46 chr9 119274823 119274992 -22996452 + MIR SINE MIR 8 176 -32 548 273 32 7 chr9 119275122 119275276 -22996168 + MIR SINE MIR 15 172 -90 234 200 263 12 chr9 119275347 119275427 -22996017 + L2 LINE L2 3171 3270 -2 238 274 86 20 chr9 119275753 119275926 -22995518 + MIR SINE MIR 9 247 -15 180 111 0 0 chr9 119276016 119276043 -22995401 + (A)n Simple_repeat Simple_repeat 1 27 0 1949 106 102 0 chr9 119276071 119276354 -22995090 + AluSx SINE Alu 1 312 0 278 318 56 104 chr9 119276875 119277014 -22994430 + L2 LINE L2 2831 2975 -297 2395 112 36 20 chr9 119277014 119277372 -22994072 - THE1B LTR MaLR 0 364 1 278 318 56 104 chr9 119277372 119277676 -22993768 + L2 LINE L2 2975 3253 -19 227 333 0 0 chr9 119278363 119278429 -22993015 - MIR SINE MIR -21 241 176 710 294 141 32 chr9 119278435 119278874 -22992570 - L2 LINE L2 0 3313 2827 216 86 0 0 chr9 119279658 119279693 -22991751 + (T)n Simple_repeat Simple_repeat 1 35 0 372 244 0 0 chr9 119280246 119280324 -22991120 - MIR SINE MIR 0 262 185 312 289 185 6 chr9 119280361 119280534 -22990910 - MIR SINE MIR -56 206 3 1541 198 0 0 chr9 119280928 119281186 -22990258 + AluJo SINE Alu 1 258 -54 254 318 73 18 chr9 119281307 119281417 -22990027 - L2 LINE L2 0 3272 3157 492 18 0 0 chr9 119282076 119282133 -22989311 + (CA)n Simple_repeat Simple_repeat 2 58 0 331 280 63 21 chr9 119282258 119282401 -22989043 - MIR SINE MIR -94 168 20 470 274 0 55 chr9 119283137 119283283 -22988161 + MIR SINE MIR 26 163 -99 323 331 74 25 chr9 119283372 119283535 -22987909 - MIR SINE MIR -72 190 20 185 229 125 0 chr9 119283950 119283998 -22987446 - L2 LINE L2 -5 3308 3255 327 324 52 29 chr9 119284500 119284636 -22986808 - MIR SINE MIR -70 192 54 186 115 58 0 chr9 119285307 119285359 -22986085 + (TA)n Simple_repeat Simple_repeat 2 56 0 629 116 45 0 chr9 119285388 119285543 -22985901 + (TA)n Simple_repeat Simple_repeat 1 162 0 199 315 112 0 chr9 119285760 119285849 -22985595 + MIR SINE MIR 34 132 -76 230 326 80 36 chr9 119285849 119285987 -22985457 + MIR3 SINE MIR 14 157 -51 621 191 104 78 chr9 119285990 119286220 -22985224 + MER106A DNA MER1_type 1 236 0 302 219 21 21 chr9 119286642 119286738 -22984706 + Charlie4 DNA MER1_type 1813 1908 -53 1561 159 11 36 chr9 119286817 119287093 -22984351 + AluJb SINE Alu 1 269 -43 203 0 0 36 chr9 119287098 119287126 -22984318 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2472 154 0 13 chr9 119287148 119287538 -22983906 - MLT1B LTR MaLR -5 385 1 180 0 0 0 chr9 119288648 119288668 -22982776 + (TA)n Simple_repeat Simple_repeat 2 21 0 196 367 128 9 chr9 119289153 119289262 -22982182 + L2 LINE L2 3133 3254 -18 279 309 63 24 chr9 119290028 119290154 -22981290 - L2 LINE L2 -1 3271 3141 390 295 129 7 chr9 119290311 119290450 -22980994 + MIR SINE MIR 48 203 -59 1913 169 70 0 chr9 119290566 119290897 -22980547 - MLT1A1 LTR MaLR 0 365 12 1012 315 70 21 chr9 119291059 119291488 -22979956 + LTR16A LTR ERVL 1 450 0 273 330 114 0 chr9 119291489 119291665 -22979779 - MIR SINE MIR -61 201 6 303 246 25 25 chr9 119292726 119292848 -22978596 + (TATATG)n Simple_repeat Simple_repeat 6 127 0 482 317 27 11 chr9 119292917 119293103 -22978341 + Charlie8 DNA MER1_type 88 276 -2141 520 306 65 0 chr9 119293466 119293651 -22977793 - MIR SINE MIR -33 229 30 221 232 18 0 chr9 119294231 119294287 -22977157 - L3 LINE CR1 -3 1574 1518 270 288 167 8 chr9 119294310 119294442 -22977002 + MIR SINE MIR 40 192 -70 1525 276 97 34 chr9 119294471 119294602 -22976842 - L2 LINE L2 0 3313 3192 1033 216 20 0 chr9 119294602 119294806 -22976638 - MER3 DNA MER1_type -1 208 1 1525 276 97 34 chr9 119294806 119295051 -22976393 - L2 LINE L2 -121 3192 2964 1889 100 4 8 chr9 119295051 119295301 -22976143 - AluSg SINE Alu -61 249 1 1525 276 97 34 chr9 119295301 119295897 -22975547 - L2 LINE L2 -349 2964 2285 3460 172 85 11 chr9 119295899 119296365 -22975079 + MER54B LTR ERVL 1 528 -265 282 29 0 0 chr9 119296365 119296400 -22975044 + (GA)n Simple_repeat Simple_repeat 2 36 0 3460 172 85 11 chr9 119296400 119296567 -22974877 + MER54B LTR ERVL 528 681 -112 865 191 6 6 chr9 119296617 119296764 -22974680 + MER54A LTR ERVL 745 894 -7 1934 124 14 24 chr9 119296764 119297055 -22974389 + AluSc SINE Alu 16 303 -6 395 232 0 0 chr9 119297073 119297155 -22974289 - L2 LINE L2 -1038 2276 2195 339 247 111 34 chr9 119297223 119297344 -22974100 - MIR SINE MIR -72 136 31 1789 178 7 3 chr9 119297717 119298003 -22973441 + AluJb SINE Alu 1 287 -25 216 0 0 0 chr9 119298158 119298182 -22973262 + (CA)n Simple_repeat Simple_repeat 2 25 0 216 0 0 0 chr9 119298581 119298605 -22972839 + (CA)n Simple_repeat Simple_repeat 2 25 0 339 321 27 33 chr9 119298611 119298795 -22972649 - MIR3 SINE MIR -21 187 5 * 445 266 16 23 chr9 119298741 119298869 -22972575 - MER5A DNA MER1_type -49 140 14 236 333 57 48 chr9 119299913 119300018 -22971426 + L2 LINE L2 3126 3231 -41 1014 214 24 15 chr9 119301171 119301377 -22970067 - MER63A DNA MER1_type -2 208 1 337 363 26 22 chr9 119301803 119302029 -22969415 + MIR SINE MIR 36 262 0 2129 148 3 0 chr9 119302276 119302622 -22968822 + AluSx SINE Alu 1 347 0 210 281 45 67 chr9 119302656 119302745 -22968699 + MIR SINE MIR 63 149 -59 299 318 112 0 chr9 119302754 119302861 -22968583 - MIR3 SINE MIR -21 187 69 390 69 0 0 chr9 119303528 119303586 -22967858 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 306 328 99 20 chr9 119304297 119304498 -22966946 - MIR SINE MIR 0 262 46 186 357 63 24 chr9 119305551 119305677 -22965767 + L2 LINE L2 2977 3107 -165 353 239 146 0 chr9 119305692 119305822 -22965622 - MIR SINE MIR 0 262 114 304 172 26 172 chr9 119305836 119305947 -22965497 - MER104 DNA Tc2 -1765 133 48 1323 163 8 149 chr9 119305947 119306309 -22965135 + AluJb SINE Alu 1 311 -1 304 172 26 172 chr9 119306309 119306348 -22965096 - MER104 DNA Tc2 -1850 48 5 449 291 61 20 chr9 119306352 119306500 -22964944 - MIR SINE MIR -108 154 1 289 384 20 0 chr9 119306573 119306672 -22964772 + L2 LINE L2 3154 3254 -18 425 324 6 12 chr9 119306706 119306873 -22964571 + MIR3 SINE MIR 29 195 -13 511 323 36 36 chr9 119307024 119307275 -22964169 + MIR SINE MIR 12 262 0 201 214 0 86 chr9 119307335 119307405 -22964039 - L2 LINE L2 -209 3063 3000 982 200 29 33 chr9 119307421 119307631 -22963813 - MER3 DNA MER1_type 0 209 1 263 244 47 71 chr9 119307668 119307795 -22963649 - L2 LINE L2 -1 3312 3189 980 220 77 5 chr9 119307795 119308004 -22963440 + MER58A DNA MER1_type 1 224 0 306 248 56 81 chr9 119308093 119308254 -22963190 - L2 LINE L2 -7 3306 3150 421 106 18 65 chr9 119308258 119308428 -22963016 + (TA)n Simple_repeat Simple_repeat 2 163 0 23 68 0 0 chr9 119308469 119308513 -22962931 + AT_rich Low_complexity Low_complexity 1 44 0 189 0 0 0 chr9 119308656 119308677 -22962767 + (TG)n Simple_repeat Simple_repeat 1 21 0 1213 288 27 40 chr9 119308754 119309243 -22962201 - L2 LINE L2 -301 3012 2535 276 301 78 10 chr9 119309248 119309351 -22962093 - L2 LINE L2 -1 3271 3162 368 299 103 0 chr9 119309574 119309671 -22961773 - MER96 DNA MER1_type? 0 175 69 216 355 81 0 chr9 119309808 119309932 -22961512 - MIR3 SINE MIR -22 186 53 310 319 21 0 chr9 119310437 119310531 -22960913 + MIR SINE MIR 34 129 -133 21 0 0 0 chr9 119310533 119310554 -22960890 + AT_rich Low_complexity Low_complexity 1 21 0 198 118 0 0 chr9 119310944 119310978 -22960466 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 216 20 0 chr9 119311495 119311546 -22959898 + GA-rich Low_complexity Low_complexity 4 55 0 1811 164 7 16 chr9 119311565 119311875 -22959569 + AluSx SINE Alu 1 307 -5 340 276 19 26 chr9 119312103 119312259 -22959185 + (CAGAGA)n Simple_repeat Simple_repeat 2 156 0 2128 105 7 0 chr9 119312272 119312549 -22958895 + AluSq SINE Alu 21 299 -14 265 315 64 27 chr9 119313136 119313309 -22958135 - MIR SINE MIR -44 218 40 517 296 21 32 chr9 119313439 119313625 -22957819 + MIR SINE MIR 5 188 -74 198 356 43 17 chr9 119313837 119313952 -22957492 - MIR SINE MIR -124 138 21 2837 158 17 2 chr9 119314013 119314482 -22956962 + MER44D DNA MER2_type 2 532 -73 1211 126 107 19 chr9 119314482 119314688 -22956756 - MSTA LTR MaLR -3 425 202 977 162 139 0 chr9 119314837 119315010 -22956434 - MSTA LTR MaLR -231 197 1 417 190 25 0 chr9 119315011 119315090 -22956354 + MER44D DNA MER2_type 525 605 0 625 258 33 45 chr9 119315312 119315556 -22955888 + MIR SINE MIR 2 242 -20 343 245 71 0 chr9 119316983 119317081 -22954363 - MIR3 SINE MIR -38 170 66 364 235 59 0 chr9 119317289 119317374 -22954070 - MIR3 SINE MIR -23 185 96 192 318 174 25 chr9 119317676 119317997 -22953447 - L2 LINE L2 -437 2877 2509 201 322 53 23 chr9 119318663 119318834 -22952610 + MIR SINE MIR 77 252 -10 1190 191 0 17 chr9 119319354 119319585 -22951859 + AluJo SINE Alu 86 312 0 251 318 95 57 chr9 119319773 119319984 -22951460 - MIR SINE MIR -31 231 13 455 288 17 45 chr9 119320496 119320673 -22950771 + MIR3 SINE MIR 16 187 -21 204 40 0 0 chr9 119320844 119320869 -22950575 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 252 361 90 8 chr9 119320872 119320994 -22950450 - L2 LINE L2 -23 3249 3118 366 289 11 0 chr9 119321040 119321130 -22950314 - L2 LINE L2 -1 3271 3181 292 244 89 11 chr9 119321531 119321621 -22949823 - MIR3 SINE MIR -15 193 97 412 58 43 29 chr9 119321735 119321804 -22949640 - L1PA16 LINE L1 0 6166 6097 191 279 131 0 chr9 119321932 119321993 -22949451 - MIR SINE MIR -62 146 78 242 215 51 38 chr9 119323186 119323265 -22948179 - Charlie1 DNA MER1_type -331 2430 2351 40 49 0 0 chr9 119323437 119323498 -22947946 + AT_rich Low_complexity Low_complexity 1 61 0 267 31 0 0 chr9 119323612 119323644 -22947800 + (TG)n Simple_repeat Simple_repeat 1 32 0 243 122 0 0 chr9 119323644 119323693 -22947751 + (GA)n Simple_repeat Simple_repeat 2 50 0 2184 138 0 6 chr9 119324119 119324430 -22947014 + AluSx SINE Alu 1 309 -3 231 133 0 0 chr9 119324659 119324704 -22946740 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 201 224 0 0 chr9 119324738 119324796 -22946648 + GA-rich Low_complexity Low_complexity 1 58 0 231 271 123 16 chr9 119325043 119325165 -22946279 + L2 LINE L2 3138 3272 0 364 255 11 32 chr9 119326360 119326454 -22944990 - MIR SINE MIR -170 92 1 2324 103 0 0 chr9 119327327 119327629 -22943815 + AluSx SINE Alu 1 302 -10 190 360 132 7 chr9 119327741 119327877 -22943567 + L2 LINE L2 3119 3271 -1 484 287 30 28 chr9 119328640 119328805 -22942639 + MIR SINE MIR 5 171 -62 207 0 0 0 chr9 119328807 119328830 -22942614 + (TAA)n Simple_repeat Simple_repeat 1 23 0 194 288 168 32 chr9 119328880 119329005 -22942439 - MIR SINE MIR -71 191 50 1673 272 51 46 chr9 119329457 119330149 -22941295 + L1ME3A LINE L1 5467 6161 -9 343 323 132 38 chr9 119330151 119330386 -22941058 + MIR SINE MIR 5 261 -1 218 364 55 27 chr9 119330992 119331102 -22940342 - L2 LINE L2 -15 3257 3145 474 184 0 0 chr9 119331757 119331833 -22939611 + MER5A DNA MER1_type 1 76 -113 1187 264 143 16 chr9 119331842 119332282 -22939162 + MLT1D LTR MaLR 5 500 -5 438 178 44 0 chr9 119332293 119332383 -22939061 + MER5A DNA MER1_type 91 184 -5 247 287 110 89 chr9 119332457 119332694 -22938750 - MLT1K LTR MaLR -90 498 257 837 218 117 10 chr9 119332732 119332929 -22938515 - MIR SINE MIR -39 223 6 355 347 47 6 chr9 119332931 119333101 -22938343 - MLT1K LTR MaLR -338 250 74 2166 127 0 0 chr9 119333219 119333519 -22937925 - AluSx SINE Alu -12 300 1 211 383 52 7 chr9 119333958 119334112 -22937332 + MIR SINE MIR 90 250 -12 619 218 102 9 chr9 119334754 119334937 -22936507 + MIR SINE MIR 6 199 -63 834 225 80 10 chr9 119334967 119335167 -22936277 - MIR SINE MIR -2 260 47 26 50 0 0 chr9 119335858 119335898 -22935546 + AT_rich Low_complexity Low_complexity 1 40 0 368 323 93 12 chr9 119336171 119336332 -22935112 - MIR SINE MIR -76 186 13 278 286 117 41 chr9 119336383 119336579 -22934865 - MLT1K LTR MaLR 0 588 378 352 349 18 6 chr9 119336934 119337100 -22934344 + MER117 DNA MER1_type 30 197 0 414 100 0 0 chr9 119337859 119337919 -22933525 + (CA)n Simple_repeat Simple_repeat 2 61 0 391 256 85 0 chr9 119338025 119338154 -22933290 - LTR33 LTR ERVL -2 519 380 527 323 52 19 chr9 119338187 119338456 -22932988 - LTR33 LTR ERVL -232 289 12 181 342 43 43 chr9 119339046 119339163 -22932281 + L2 LINE L2 3121 3237 -35 486 310 49 11 chr9 119340055 119340239 -22931205 + MIR SINE MIR 24 214 -48 2733 142 69 2 chr9 119340489 119340940 -22930504 + L1MB3 LINE L1 5701 6181 -2 908 204 70 5 chr9 119341420 119341606 -22929838 + MER20 DNA MER1_type 16 213 -6 297 319 53 49 chr9 119342713 119342998 -22928446 + L2 LINE L2 2826 3111 -161 265 337 66 44 chr9 119343064 119343245 -22928199 + L2 LINE L2 2557 2741 -573 263 259 0 0 chr9 119343455 119343513 -22927931 + L2 LINE L2 2988 3045 -227 2394 80 3 0 chr9 119343525 119343827 -22927617 - AluY SINE Alu -8 303 1 2098 225 104 39 chr9 119343897 119344157 -22927287 + L1MC4 LINE L1 7206 7448 -594 2150 109 0 26 chr9 119344157 119344461 -22926983 + AluSc SINE Alu 1 296 -13 2098 225 104 39 chr9 119344461 119344866 -22926578 + L1MC4 LINE L1 7448 7914 -128 2234 230 62 25 chr9 119344971 119345437 -22926007 - L1M4 LINE L1 -1413 4733 4237 186 43 0 0 chr9 119345437 119345460 -22925984 + (TATG)n Simple_repeat Simple_repeat 4 26 0 2234 230 62 25 chr9 119345460 119345602 -22925842 - L1M4 LINE L1 -1909 4237 4102 32 49 5 0 chr9 119345603 119345703 -22925741 + AT_rich Low_complexity Low_complexity 1 60 0 2368 89 3 13 chr9 119345737 119346052 -22925392 + AluSp SINE Alu 1 312 -1 310 239 33 11 chr9 119346058 119346150 -22925294 - MER5B DNA MER1_type -78 100 7 462 261 51 40 chr9 119346336 119346512 -22924932 - MIR SINE MIR -72 190 13 333 354 25 34 chr9 119346837 119347074 -22924370 - MIR SINE MIR -12 250 16 946 229 6 0 chr9 119347157 119347340 -22924104 - MER5A DNA MER1_type -5 184 1 998 216 9 69 chr9 119347414 119347646 -22923798 + MER58A DNA MER1_type 1 218 -6 661 236 168 0 chr9 119347666 119347827 -22923617 + MER5A DNA MER1_type 1 188 -1 542 290 140 0 chr9 119347833 119348047 -22923397 + MIR SINE MIR 4 247 -15 360 326 67 28 chr9 119348280 119348458 -22922986 + MIR SINE MIR 62 246 -16 411 326 8 16 chr9 119348787 119348916 -22922528 + MIR SINE MIR 16 143 -65 254 242 116 11 chr9 119349067 119349162 -22922282 - MIR3 SINE MIR -20 188 84 369 307 39 8 chr9 119349794 119349921 -22921523 + MER117 DNA MER1_type 56 186 -11 266 320 19 10 chr9 119350524 119350627 -22920817 + L2 LINE L2 1525 1628 -1686 257 308 125 56 chr9 119350656 119350768 -22920676 - MLT1K LTR MaLR -36 552 449 2430 96 3 0 chr9 119350768 119351080 -22920364 - AluSp SINE Alu 0 313 1 257 308 125 56 chr9 119351080 119351344 -22920100 - MLT1K LTR MaLR -139 449 150 1125 195 27 36 chr9 119351810 119352031 -22919413 + MER20 DNA MER1_type 1 219 0 429 250 0 10 chr9 119352176 119352280 -22919164 - MIR SINE MIR -14 248 146 2190 109 7 0 chr9 119353047 119353350 -22918094 + AluSg SINE Alu 1 305 -5 197 119 24 0 chr9 119353362 119353404 -22918040 + CT-rich Low_complexity Low_complexity 2 44 0 318 26 0 0 chr9 119353405 119353444 -22918000 + (CA)n Simple_repeat Simple_repeat 2 40 0 2926 214 208 26 chr9 119353453 119354460 -22916984 + L1MC4 LINE L1 6709 7898 -144 205 353 12 0 chr9 119354880 119354965 -22916479 - MIR SINE MIR -118 144 59 1825 138 46 89 chr9 119355923 119356315 -22915129 + THE1C LTR MaLR 1 375 0 225 178 0 0 chr9 119356489 119356534 -22914910 + GA-rich Low_complexity Low_complexity 1 45 0 867 284 105 21 chr9 119356850 119357280 -22914164 + MLT1L LTR MaLR 150 615 0 271 336 51 68 chr9 119357296 119357432 -22914012 + L2 LINE L2 2809 2941 -372 2373 105 0 3 chr9 119357432 119357737 -22913707 - AluSx SINE Alu -8 304 1 271 336 51 68 chr9 119357737 119357835 -22913609 + L2 LINE L2 2941 3039 -274 943 292 4 4 chr9 119357871 119358128 -22913316 + MIR SINE MIR 6 262 0 198 313 52 78 chr9 119358128 119358243 -22913201 + L2 LINE L2 3115 3226 -46 257 277 0 0 chr9 119358297 119358362 -22913082 + (GAATG)n Simple_repeat Simple_repeat 3 67 0 502 200 0 24 chr9 119358558 119358683 -22912761 - L1MB7 LINE L1 -9 6175 6054 368 88 18 0 chr9 119360004 119360061 -22911383 + (TG)n Simple_repeat Simple_repeat 1 58 0 207 246 62 31 chr9 119360172 119360237 -22911207 - MIR SINE MIR -188 74 8 378 181 11 32 chr9 119360337 119360431 -22911013 + L1MD3 LINE L1 7781 7872 -123 824 216 82 45 chr9 119360434 119360703 -22910741 + MLT2D LTR ERVL 1 279 -135 673 161 25 0 chr9 119360704 119360822 -22910622 + L1MD3 LINE L1 7875 7995 0 3801 144 81 6 chr9 119360977 119361677 -22909767 - Tigger3(Golem) DNA MER2_type 0 3029 2277 617 198 0 13 chr9 119361777 119361934 -22909510 + (TGG)n Simple_repeat Simple_repeat 1 155 0 767 234 50 29 chr9 119361945 119362184 -22909260 + MIR SINE MIR 6 249 -13 366 248 43 12 chr9 119362255 119362392 -22909052 - MIR SINE MIR -58 150 23 207 167 0 0 chr9 119362412 119362454 -22908990 + T-rich Low_complexity Low_complexity 1 42 0 460 298 130 19 chr9 119362530 119362738 -22908706 - MIR SINE MIR -11 251 21 256 325 19 39 chr9 119362931 119363085 -22908359 - MIR SINE MIR -79 183 33 2055 84 14 3 chr9 119363220 119363505 -22907939 - L1PA13 LINE L1 -4 6159 5872 262 298 58 16 chr9 119364846 119364967 -22906477 - MLT1J LTR MaLR -8 503 378 2314 108 0 0 chr9 119364967 119365272 -22906172 - AluSx SINE Alu -7 305 1 333 293 112 48 chr9 119365423 119365672 -22905772 - MLT1J LTR MaLR -238 273 9 249 358 49 24 chr9 119365698 119365821 -22905623 + L2 LINE L2 3126 3251 -21 * 333 319 78 59 chr9 119365812 119366412 -22905032 + L2 LINE L2 2686 3310 -3 182 231 39 0 chr9 119366919 119366971 -22904473 - L2 LINE L2 -437 2876 2823 407 287 54 18 chr9 119368994 119369161 -22902283 + MIR SINE MIR 46 218 -44 305 208 56 0 chr9 119369738 119369810 -22901634 + MIR SINE MIR 108 183 -79 510 252 89 42 chr9 119371154 119371368 -22900076 + MIR SINE MIR 13 236 -26 340 111 32 0 chr9 119372079 119372142 -22899302 + (TG)n Simple_repeat Simple_repeat 2 66 0 24 0 0 0 chr9 119372232 119372256 -22899188 + AT_rich Low_complexity Low_complexity 1 24 0 226 267 105 12 chr9 119372663 119372749 -22898695 + MIR SINE MIR 162 255 -7 236 247 164 0 chr9 119372916 119372989 -22898455 + MIR3 SINE MIR 110 194 -14 4206 123 5 25 chr9 119373032 119373539 -22897905 + MER41B LTR ERV1 1 494 -141 2102 119 0 64 chr9 119373539 119373867 -22897577 - AluSx SINE Alu -5 307 1 4206 123 5 25 chr9 119373867 119374007 -22897437 + MER41B LTR ERV1 494 635 0 275 272 140 29 chr9 119374133 119374269 -22897175 + L3 LINE CR1 1425 1575 -2 629 297 78 30 chr9 119375212 119375575 -22895869 - L1MC4a LINE L1 -174 5947 5568 2179 164 48 17 chr9 119375974 119376048 -22895396 + MSTA LTR MaLR 1 71 -357 2124 154 19 21 chr9 119376048 119376384 -22895060 + THE1C LTR MaLR 1 337 -38 2352 96 0 0 chr9 119376384 119376687 -22894757 - AluY SINE Alu -8 303 1 2124 154 19 21 chr9 119376687 119376726 -22894718 + THE1C LTR MaLR 337 375 0 2179 164 48 17 chr9 119376726 119377066 -22894378 + MSTA LTR MaLR 71 428 0 504 272 8 0 chr9 119377113 119377238 -22894206 + MIR SINE MIR 41 166 -96 427 269 8 15 chr9 119377248 119377378 -22894066 - L2 LINE L2 0 3313 3185 1809 167 17 0 chr9 119378037 119378330 -22893114 - AluJb SINE Alu -14 298 1 207 0 0 0 chr9 119378330 119378353 -22893091 + (A)n Simple_repeat Simple_repeat 1 23 0 214 239 56 0 chr9 119378623 119378694 -22892750 - MIR SINE MIR -67 141 67 283 302 0 26 chr9 119378895 119379011 -22892433 - MIR SINE MIR -82 180 68 343 243 103 15 chr9 119379188 119379324 -22892120 - L1ME4a LINE L1 -195 5926 5779 2819 73 3 0 chr9 119379776 119380130 -22891314 - THE1A LTR MaLR 0 355 1 223 325 13 0 chr9 119380143 119380220 -22891224 + L2 LINE L2 3171 3248 -24 266 211 0 0 chr9 119380375 119380432 -22891012 - MER5A DNA MER1_type -80 109 53 370 357 59 34 chr9 119380527 119380914 -22890530 - L2 LINE L2 -1 3312 2916 1787 158 50 0 chr9 119381132 119381429 -22890015 - AluJb SINE Alu 0 312 1 380 281 36 66 chr9 119381468 119381635 -22889809 + MIR SINE MIR 20 181 -81 2309 234 101 63 chr9 119381865 119382630 -22888814 - MER21B LTR ERV1 -58 805 12 276 345 0 9 chr9 119383038 119383148 -22888296 + MIR SINE MIR 39 147 -115 234 0 0 0 chr9 119383420 119383446 -22887998 + (TAA)n Simple_repeat Simple_repeat 2 27 0 374 241 117 14 chr9 119383655 119383800 -22887644 - MIR3 SINE MIR -43 165 6 253 261 43 11 chr9 119383901 119383993 -22887451 + L2 LINE L2 2887 2981 -291 209 288 0 0 chr9 119384726 119384785 -22886659 - MIR SINE MIR -108 154 96 1918 151 0 17 chr9 119384790 119385081 -22886363 + AluSx SINE Alu 1 286 -26 1736 198 19 19 chr9 119386015 119386074 -22885370 - L1MD3 LINE L1 -16 7979 7921 1983 72 46 4 chr9 119386074 119386365 -22885079 - AluY SINE Alu 0 308 7 1736 198 19 19 chr9 119386365 119386678 -22884766 - L1MD3 LINE L1 -73 7922 7606 477 304 128 8 chr9 119387112 119387362 -22884082 + L2 LINE L2 1280 1559 -1755 896 178 61 0 chr9 119387534 119387697 -22883747 + MER20 DNA MER1_type 46 218 -1 634 189 25 25 chr9 119387731 119387890 -22883554 + MER69 DNA AcHobo 2368 2526 0 1793 276 113 51 chr9 119387973 119389140 -22882304 + L2 LINE L2 1780 3017 -296 203 259 35 17 chr9 119389342 119389400 -22882044 - L3 LINE CR1 -227 1350 1292 533 291 45 20 chr9 119389529 119389728 -22881716 - MIR SINE MIR 0 262 59 388 319 62 0 chr9 119390806 119391016 -22880428 + MIR SINE MIR 40 262 0 237 66 10 28 chr9 119391146 119391190 -22880254 + MADE1 DNA Mariner 1 33 -47 781 203 62 21 chr9 119392230 119392422 -22879022 + MER115 DNA AcHobo 492 691 -2 871 243 8 38 chr9 119393302 119393537 -22877907 - MIR SINE MIR 0 262 35 270 358 42 49 chr9 119393787 119394075 -22877369 - L2 LINE L2 -36 3236 2951 457 182 0 0 chr9 119394521 119394598 -22876846 - MLT1G1 LTR MaLR -518 77 1 756 240 115 105 chr9 119394603 119395245 -22876199 - L2 LINE L2 -32 3281 2665 295 122 0 20 chr9 119395245 119395294 -22876150 - MLT2B2 LTR ERVL 0 515 468 * 3959 130 307 21 chr9 119395291 119395909 -22875535 - Tigger3b DNA MER2_type -1797 1231 791 2064 112 38 3 chr9 119395909 119396240 -22875204 - AluSx SINE Alu 0 341 1 3959 130 307 21 chr9 119396240 119396522 -22874922 - Tigger3b DNA MER2_type -2237 791 71 499 248 9 0 chr9 119396522 119396627 -22874817 - AluJ SINE Alu -75 237 132 620 198 112 0 chr9 119396635 119396751 -22874693 - AluJ SINE Alu -173 129 1 234 269 0 0 chr9 119396752 119396804 -22874640 - Tigger3b DNA MER2_type -1153 78 27 243 125 0 0 chr9 119396863 119396903 -22874541 + (CA)n Simple_repeat Simple_repeat 1 40 0 210 242 15 30 chr9 119397211 119397277 -22874167 + GA-rich Low_complexity Low_complexity 2 66 0 209 309 37 0 chr9 119397648 119397729 -22873715 + MIR SINE MIR 109 192 -70 2482 216 32 66 chr9 119397773 119398458 -22872986 - LTR8 LTR ERV1 0 691 30 1609 177 7 27 chr9 119399028 119399327 -22872117 + AluJb SINE Alu 11 303 -9 1930 161 0 10 chr9 119399570 119399869 -22871575 - AluJo SINE Alu -16 296 1 602 285 30 33 chr9 119400220 119400490 -22870954 - L1MC4a LINE L1 -1876 5932 5664 709 308 51 21 chr9 119400872 119401065 -22870379 + LTR16C LTR ERVL 149 358 -133 1743 126 93 68 chr9 119401065 119401379 -22870065 + THE1C LTR MaLR 1 327 -48 1957 98 64 20 chr9 119401379 119401674 -22869770 + AluSq SINE Alu 5 312 -1 1743 126 93 68 chr9 119401674 119401725 -22869719 + THE1C LTR MaLR 327 375 0 709 308 51 21 chr9 119401725 119401862 -22869582 + LTR16C LTR ERVL 358 489 -2 2024 134 40 11 chr9 119402580 119402931 -22868513 - MER46B DNA MER2_type 0 236 1 307 281 35 18 chr9 119403131 119403245 -22868199 + MIR SINE MIR 30 145 -63 1052 170 0 13 chr9 119403250 119403509 -22867935 + AluJb SINE Alu 2 305 -7 306 315 43 18 chr9 119404328 119404543 -22866901 - MIR SINE MIR 0 262 44 315 0 0 0 chr9 119404799 119404834 -22866610 + (TG)n Simple_repeat Simple_repeat 1 35 0 225 331 25 16 chr9 119404846 119404967 -22866477 - L2 LINE L2 -55 3258 3137 598 203 177 0 chr9 119405028 119405186 -22866258 - MER53 DNA DNA -3 186 1 322 214 99 30 chr9 119405272 119405403 -22866041 + L1ME4a LINE L1 5982 6121 0 28 48 0 0 chr9 119405799 119405841 -22865603 + AT_rich Low_complexity Low_complexity 1 42 0 373 293 41 0 chr9 119406057 119406180 -22865264 - MIR SINE MIR -2 260 133 226 228 38 25 chr9 119406218 119406297 -22865147 - L1MC5 LINE L1 -35 7926 7847 446 323 66 15 chr9 119406379 119406577 -22864867 + MIR SINE MIR 41 248 -14 286 296 64 24 chr9 119407270 119407395 -22864049 - MIR SINE MIR -54 208 79 198 167 0 0 chr9 119408002 119408038 -22863406 + CT-rich Low_complexity Low_complexity 1 36 0 1818 158 24 10 chr9 119408044 119408222 -22863222 - AluJo SINE Alu -9 303 118 459 0 0 0 chr9 119408222 119408273 -22863171 + (TG)n Simple_repeat Simple_repeat 2 52 0 1818 158 24 10 chr9 119408273 119408392 -22863052 - AluJo SINE Alu -194 118 2 202 290 0 86 chr9 119408595 119408688 -22862756 - L2 LINE L2 -221 3051 2967 232 311 0 0 chr9 119408734 119408795 -22862649 + CT-rich Low_complexity Low_complexity 1 61 0 1780 131 3 108 chr9 119408822 119408956 -22862488 + AluSp SINE Alu 13 159 -154 2321 98 25 0 chr9 119408956 119409282 -22862162 + L1PA10 LINE L1 5816 6149 -19 1780 131 3 108 chr9 119409282 119409482 -22861962 + AluSp SINE Alu 159 312 -1 813 218 0 36 chr9 119409706 119409899 -22861545 - AluJb SINE Alu -12 300 115 2012 149 0 0 chr9 119410026 119410315 -22861129 + AluJb SINE Alu 1 289 -23 239 244 35 0 chr9 119410452 119410538 -22860906 + L2 LINE L2 2882 2970 -302 192 279 81 0 chr9 119410815 119410901 -22860543 - MIR SINE MIR -56 206 114 218 321 0 0 chr9 119410920 119410973 -22860471 - L2 LINE L2 -11 3261 3209 263 275 176 43 chr9 119411019 119411252 -22860192 + L2 LINE L2 3030 3293 -20 1509 199 30 3 chr9 119411327 119411629 -22859815 + AluJb SINE Alu 1 310 -2 243 125 0 0 chr9 119412093 119412133 -22859311 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 522 133 36 0 chr9 119412206 119412289 -22859155 + MLT1C LTR MaLR 4 89 -301 2083 126 0 0 chr9 119412291 119412606 -22858838 - AluSx SINE Alu 0 319 5 1008 134 42 0 chr9 119412626 119412888 -22858556 - L1MA4A LINE L1 -2 6301 5979 869 142 84 124 chr9 119412888 119412978 -22858466 + MLT1C LTR MaLR 80 172 -295 1563 87 0 0 chr9 119412978 119413174 -22858270 + AluY SINE Alu 100 295 -16 869 142 84 124 chr9 119413174 119413308 -22858136 + MLT1C LTR MaLR 172 295 -172 675 139 0 0 chr9 119413314 119413415 -22858029 - AluSg/x SINE Alu -22 290 190 722 199 45 7 chr9 119413460 119413658 -22857786 + MLT1B LTR MaLR 149 390 0 259 318 0 0 chr9 119414532 119414595 -22856849 - MLT1K LTR MaLR -524 64 2 934 296 59 23 chr9 119414705 119415148 -22856296 - L1ME4a LINE L1 -218 5903 5445 959 157 6 18 chr9 119415151 119415317 -22856127 - FRAM SINE Alu -16 160 1 324 70 0 0 chr9 119415896 119415939 -22855505 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 443 323 35 10 chr9 119416386 119416584 -22854860 - MIR SINE MIR -11 251 49 188 202 28 0 chr9 119416665 119416714 -22854730 + MIR SINE MIR 97 164 -62 226 246 0 0 chr9 119417399 119417456 -22853988 - MIR SINE MIR -68 140 84 237 65 0 0 chr9 119417467 119417498 -22853946 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1504 226 81 27 chr9 119417678 119418160 -22853284 + Charlie4a DNA MER1_type 1 508 0 185 258 81 73 chr9 119418296 119418420 -22853024 - L2 LINE L2 0 3313 3189 * 304 281 93 7 chr9 119418408 119418547 -22852897 - MIR SINE MIR -64 198 48 387 0 0 0 chr9 119418606 119418649 -22852795 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 385 242 103 18 chr9 119418747 119418912 -22852532 - MIR3 SINE MIR -14 194 16 6387 86 19 2 chr9 119419290 119420151 -22851293 - L1PA10 LINE L1 -17 6151 5277 239 317 8 0 chr9 119420481 119420601 -22850843 + (TA)n Simple_repeat Simple_repeat 1 121 0 1395 167 29 16 chr9 119420643 119420888 -22850556 - LTR10B LTR ERV1 0 547 300 13019 138 98 7 chr9 119421050 119423266 -22848178 - Tigger1 DNA MER2_type 0 2418 2 2129 142 94 13 chr9 119423967 119424362 -22847082 - MSTA LTR MaLR -1 427 1 234 208 52 39 chr9 119424706 119424783 -22846661 - MIR SINE MIR -15 247 170 383 264 49 21 chr9 119424791 119424935 -22846509 + MIR SINE MIR 115 262 0 330 335 16 39 chr9 119425081 119425335 -22846109 + L2 LINE L2 2813 3060 -212 511 252 70 70 chr9 119425630 119425787 -22845657 - MIR SINE MIR -4 258 99 1716 121 4 0 chr9 119425787 119426019 -22845425 + AluSx SINE Alu 58 290 -22 511 252 70 70 chr9 119426019 119426119 -22845325 - MIR SINE MIR -162 100 1 2277 186 61 14 chr9 119426175 119426670 -22844774 + L1MB8 LINE L1 5651 6168 -10 2197 122 0 0 chr9 119426706 119427017 -22844427 - AluY SINE Alu 0 311 1 234 231 58 0 chr9 119427518 119427570 -22843874 + L2 LINE L2 3217 3271 -1 212 200 22 0 chr9 119427671 119427716 -22843728 - MIR SINE MIR -111 151 106 1491 164 31 105 chr9 119427844 119428168 -22843276 - AluJb SINE Alu -8 304 5 977 193 6 0 chr9 119428174 119428340 -22843104 + MER58B DNA MER1_type 175 341 0 1350 244 65 34 chr9 119428649 119428785 -22842659 + MLT1C LTR MaLR 11 141 -326 2229 107 23 3 chr9 119428785 119429084 -22842360 - AluSx SINE Alu -7 305 1 1350 244 65 34 chr9 119429084 119429390 -22842054 + MLT1C LTR MaLR 141 467 0 330 355 37 14 chr9 119429612 119429829 -22841615 + MIR SINE MIR 28 249 -13 1790 44 0 0 chr9 119430361 119430619 -22840825 - AluY SINE Alu 0 364 107 274 286 19 9 chr9 119430624 119430729 -22840715 + CT-rich Low_complexity Low_complexity 1 106 0 268 285 16 24 chr9 119430771 119430947 -22840497 + T-rich Low_complexity Low_complexity 1 174 0 218 284 7 64 chr9 119430991 119431080 -22840364 + CT-rich Low_complexity Low_complexity 2 82 -52 2035 114 42 0 chr9 119431080 119431369 -22840075 - AluSg SINE Alu -9 301 1 218 284 7 64 chr9 119431369 119431420 -22840024 + CT-rich Low_complexity Low_complexity 82 134 0 369 256 37 0 chr9 119432011 119432093 -22839351 + L2 LINE L2 3208 3292 -21 222 37 0 0 chr9 119432101 119432128 -22839316 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 833 300 29 47 chr9 119432288 119432540 -22838904 + LTR16A LTR ERVL 97 343 -107 1221 189 177 0 chr9 119432540 119432805 -22838639 - AluJo SINE Alu 0 312 1 833 300 29 47 chr9 119432805 119432895 -22838549 + LTR16A LTR ERVL 343 433 -17 223 301 120 15 chr9 119432900 119433159 -22838285 - L2 LINE L2 -404 2910 2625 303 325 32 38 chr9 119433661 119433818 -22837626 + MIR SINE MIR 28 183 -79 212 254 45 4 chr9 119433907 119433993 -22837451 + MIR SINE MIR 55 143 -65 290 264 151 0 chr9 119434556 119434662 -22836782 + MIR SINE MIR 116 237 -25 393 58 0 0 chr9 119435146 119435198 -22836246 + (TG)n Simple_repeat Simple_repeat 2 53 0 530 283 97 54 chr9 119435950 119436456 -22834988 - MLT1K LTR MaLR -8 580 5 432 0 0 0 chr9 119436731 119436779 -22834665 + (TG)n Simple_repeat Simple_repeat 2 49 0 253 218 177 20 chr9 119437192 119437343 -22834101 - MIR3 SINE MIR -75 133 5 1485 224 129 47 chr9 119438678 119439143 -22832301 + MLT1D LTR MaLR 1 503 -2 22 0 0 0 chr9 119439177 119439199 -22832245 + AT_rich Low_complexity Low_complexity 1 22 0 1236 219 100 76 chr9 119439702 119440240 -22831204 - MLT1H1 LTR MaLR -1 554 4 259 377 35 0 chr9 119440292 119440406 -22831038 - MIR SINE MIR -59 149 32 403 289 0 0 chr9 119440829 119440943 -22830501 - MIR SINE MIR -32 230 117 473 267 50 6 chr9 119442154 119442315 -22829129 - MIR SINE MIR -77 185 18 2376 81 3 3 chr9 119443042 119443349 -22828095 + AluY SINE Alu 1 307 -4 551 258 70 37 chr9 119443481 119443725 -22827719 + MIR SINE MIR 11 262 0 467 254 0 16 chr9 119443813 119443935 -22827509 - MIR SINE MIR -92 170 51 309 259 50 37 chr9 119443999 119444172 -22827272 - L1ME LINE L1 -359 5811 5634 21 0 0 0 chr9 119444740 119444761 -22826683 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr9 119444902 119444940 -22826504 + AT_rich Low_complexity Low_complexity 1 38 0 360 0 0 0 chr9 119445075 119445115 -22826329 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 54 0 0 chr9 119445308 119445345 -22826099 + AT_rich Low_complexity Low_complexity 1 37 0 351 296 48 16 chr9 119445603 119445728 -22825716 + MIR SINE MIR 49 177 -85 342 268 80 7 chr9 119446312 119446450 -22824994 - L1ME4a LINE L1 -1 6120 5973 486 33 0 0 chr9 119446462 119446522 -22824922 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 234 259 114 46 chr9 119446531 119446662 -22824782 - L1ME3A LINE L1 -9 6161 6022 294 302 54 39 chr9 119448355 119448484 -22822960 + MIR SINE MIR 32 162 -100 4197 183 37 43 chr9 119448489 119449333 -22822111 + MER21B LTR ERV1 14 852 -11 632 246 52 63 chr9 119449373 119449625 -22821819 + MIR SINE MIR 3 251 -11 319 335 76 0 chr9 119449760 119449918 -22821526 + MIR SINE MIR 87 256 -6 221 234 47 75 chr9 119450010 119450117 -22821327 + MIR SINE MIR 21 124 -84 727 236 39 10 chr9 119450227 119450435 -22821009 + MIR SINE MIR 49 262 0 2304 92 0 0 chr9 119450580 119450881 -22820563 + AluSc SINE Alu 1 301 0 318 80 0 0 chr9 119450936 119450986 -22820458 + (T)n Simple_repeat Simple_repeat 1 50 0 298 319 18 0 chr9 119451220 119451333 -22820111 - MIR3 SINE MIR -4 204 90 4874 155 52 6 chr9 119451621 119452474 -22818970 - L1MB2 LINE L1 0 6171 5282 2082 68 0 19 chr9 119452612 119452876 -22818568 + AluY SINE Alu 38 296 -15 253 324 86 45 chr9 119452878 119453100 -22818344 + MIR SINE MIR 4 234 -28 351 250 50 96 chr9 119453329 119453549 -22817895 - MIR SINE MIR -25 237 28 384 301 15 8 chr9 119453813 119453946 -22817498 - MIR SINE MIR -72 190 57 3360 100 18 59 chr9 119454066 119454317 -22817127 - L1PA16 LINE L1 -9 6157 5897 2221 116 0 3 chr9 119454317 119454618 -22816826 - AluSq SINE Alu -13 300 1 3360 100 18 59 chr9 119454618 119454927 -22816517 - L1PA16 LINE L1 -269 5897 5620 260 281 36 15 chr9 119455976 119456099 -22815345 + MIR SINE MIR 38 161 -67 248 298 155 11 chr9 119456175 119456356 -22815088 - MIR SINE MIR 0 262 56 734 163 30 22 chr9 119456455 119456590 -22814854 + AluJo SINE Alu 2 137 -175 216 0 0 0 chr9 119456599 119456623 -22814821 + (TCTCCC)n Simple_repeat Simple_repeat 3 26 0 5553 66 24 64 chr9 119456623 119457471 -22813973 + SVA Other Other 53 866 -520 274 226 0 71 chr9 119457634 119457718 -22813726 + MER3 DNA MER1_type 132 209 0 247 203 40 0 chr9 119457881 119457955 -22813489 - MIR SINE MIR -115 147 71 349 352 8 0 chr9 119458508 119458633 -22812811 - MIR3 SINE MIR 0 208 83 348 268 132 0 chr9 119458793 119458958 -22812486 - MIR SINE MIR -16 246 58 616 298 58 13 chr9 119459330 119459555 -22811889 - MIR SINE MIR -21 241 7 206 235 12 0 chr9 119460941 119461022 -22810422 + (TTCA)n Simple_repeat Simple_repeat 3 84 0 211 306 56 9 chr9 119461159 119461267 -22810177 - L2 LINE L2 -23 3249 3137 235 322 60 91 chr9 119461907 119462205 -22809239 + L2 LINE L2 2935 3223 -49 297 75 0 0 chr9 119462410 119462450 -22808994 + (GAATG)n Simple_repeat Simple_repeat 3 42 0 328 214 22 22 chr9 119462754 119462843 -22808601 + MIR SINE MIR 89 177 -85 184 321 49 0 chr9 119463582 119463663 -22807781 - MIR SINE MIR -10 252 168 229 257 9 35 chr9 119464888 119465001 -22806443 + (CA)n Simple_repeat Simple_repeat 1 110 0 380 291 23 12 chr9 119466821 119466993 -22804451 + (TTCA)n Simple_repeat Simple_repeat 3 176 0 438 351 62 34 chr9 119467001 119467354 -22804090 - L2 LINE L2 -3 3269 2907 201 333 65 26 chr9 119467458 119467611 -22803833 - L2 LINE L2 -195 3077 2919 183 254 48 16 chr9 119467741 119467804 -22803640 - L2 LINE L2 -540 2774 2710 247 286 12 0 chr9 119468203 119468287 -22803157 - MIR SINE MIR -15 247 163 190 290 14 14 chr9 119468456 119468525 -22802919 - MIR SINE MIR -176 86 18 407 280 16 39 chr9 119469378 119469560 -22801884 + CT-rich Low_complexity Low_complexity 2 179 0 332 305 32 48 chr9 119469724 119469911 -22801533 - MIR3 SINE MIR -18 190 7 200 250 23 0 chr9 119470588 119470632 -22800812 - L2 LINE L2 -18 3254 3210 786 261 29 14 chr9 119470876 119471083 -22800361 + MER63A DNA MER1_type 1 210 0 296 306 102 0 chr9 119471207 119471305 -22800139 + L2 LINE L2 3152 3259 -13 398 297 0 0 chr9 119471312 119471423 -22800021 + MIR SINE MIR 37 147 -61 308 203 29 0 chr9 119471435 119471504 -22799940 - Charlie8 DNA MER1_type 0 2417 2347 2370 81 0 0 chr9 119471530 119471815 -22799629 + AluSx SINE Alu 1 285 -27 582 158 0 0 chr9 119471996 119472097 -22799347 - FLAM_A SINE Alu -1 141 41 425 272 76 43 chr9 119472127 119472311 -22799133 - L1ME3 LINE L1 -45 6117 5928 242 218 0 18 chr9 119472328 119472383 -22799061 - L1ME3 LINE L1 -198 5964 5911 690 249 53 71 chr9 119472613 119472894 -22798550 - Charlie8 DNA MER1_type -2141 276 1 394 294 90 17 chr9 119473168 119473345 -22798099 - MIR SINE MIR -12 250 61 259 294 0 0 chr9 119473613 119473681 -22797763 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 194 0 0 37 chr9 119473812 119473839 -22797605 + (TAA)n Simple_repeat Simple_repeat 2 27 0 634 274 67 14 chr9 119474163 119474371 -22797073 + MIR SINE MIR 17 235 -27 499 237 4 8 chr9 119474396 119474642 -22796802 + (ATG)n Simple_repeat Simple_repeat 1 244 0 23 0 0 0 chr9 119475952 119475975 -22795469 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr9 119476321 119476344 -22795100 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 2491 81 0 0 chr9 119476417 119476714 -22794730 - AluSc SINE Alu -12 297 1 499 346 0 21 chr9 119477333 119477521 -22793923 - MER5A DNA MER1_type -5 184 1 339 179 0 0 chr9 119477554 119477621 -22793823 + (CA)n Simple_repeat Simple_repeat 1 67 0 386 280 23 15 chr9 119478184 119478316 -22793128 - MIR SINE MIR -109 153 21 206 287 58 46 chr9 119478924 119479011 -22792433 - MIR3 SINE MIR -7 201 114 389 326 26 26 chr9 119479020 119479213 -22792231 - MIR3 SINE MIR 0 208 16 291 273 13 0 chr9 119479796 119479873 -22791571 - L2 LINE L2 0 3272 3195 396 0 0 0 chr9 119479935 119479979 -22791465 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 218 341 113 35 chr9 119480076 119480305 -22791139 - L2 LINE L2 -110 3162 2916 465 327 71 28 chr9 119480316 119480668 -22790776 + L2 LINE L2 2929 3295 -18 360 133 0 0 chr9 119480679 119480739 -22790705 + (TGGA)n Simple_repeat Simple_repeat 2 61 0 302 306 50 62 chr9 119481529 119481689 -22789755 - MIR3 SINE MIR -50 158 1 293 276 117 37 chr9 119482066 119482229 -22789215 + MIR SINE MIR 34 209 -53 197 303 82 41 chr9 119483194 119483316 -22788128 - L2 LINE L2 -218 3054 2928 348 333 47 6 chr9 119483796 119483967 -22787477 - MIR3 SINE MIR -1 207 30 307 268 94 87 chr9 119484287 119484542 -22786902 - L1ME4a LINE L1 -1 6120 5868 1515 189 17 17 chr9 119484542 119484668 -22786776 + AluJo SINE Alu 2 127 -185 297 0 0 0 chr9 119484668 119484701 -22786743 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1515 189 17 17 chr9 119484701 119484865 -22786579 + AluJo SINE Alu 126 292 -20 307 268 94 87 chr9 119484865 119485151 -22786293 - L1ME4a LINE L1 -253 5868 5575 1526 98 5 5 chr9 119485429 119485680 -22785764 + AluSg/x SINE Alu 79 329 0 545 84 0 0 chr9 119485772 119485843 -22785601 - Alu SINE Alu -246 72 2 238 250 57 73 chr9 119486323 119486447 -22784997 - L2 LINE L2 -210 3103 2982 443 340 24 10 chr9 119486820 119487029 -22784415 - MIR SINE MIR -31 231 20 506 237 77 67 chr9 119487731 119487783 -22783661 - MIR SINE MIR -54 208 158 1474 200 55 14 chr9 119487783 119488073 -22783371 - AluJo SINE Alu -10 302 1 506 237 77 67 chr9 119488073 119488214 -22783230 - MIR SINE MIR -104 158 13 221 292 0 0 chr9 119488930 119488995 -22782449 + MIR SINE MIR 39 103 -105 615 262 29 118 chr9 119489496 119489528 -22781916 + L2 LINE L2 2666 2699 -614 1911 88 0 4 chr9 119489528 119489766 -22781678 - AluSg SINE Alu -10 300 64 615 262 29 118 chr9 119489766 119490451 -22780993 + L2 LINE L2 2699 3313 0 317 269 13 0 chr9 119491203 119491281 -22780163 + (CACCAT)n Simple_repeat Simple_repeat 5 83 0 597 266 36 17 chr9 119491286 119491517 -22779927 - MIR SINE MIR -7 255 22 202 211 0 0 chr9 119492341 119492379 -22779065 + MIR SINE MIR 109 146 -116 412 253 38 44 chr9 119492451 119492609 -22778835 + MIR SINE MIR 104 260 -2 265 228 0 122 chr9 119492715 119492838 -22778606 + MIR SINE MIR 50 157 -105 256 255 35 24 chr9 119493169 119493279 -22778165 - MIR SINE MIR -61 147 79 260 342 50 0 chr9 119493671 119493791 -22777653 - MIR3 SINE MIR -25 183 58 195 100 0 0 chr9 119493815 119493845 -22777599 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 654 62 0 0 chr9 119493989 119494069 -22777375 + MADE1 DNA Mariner 1 80 0 247 342 106 35 chr9 119494142 119494341 -22777103 - L2 LINE L2 -339 2975 2763 331 359 10 20 chr9 119494686 119494881 -22776563 - MIR SINE MIR -33 229 37 185 310 35 23 chr9 119495293 119495380 -22776064 - L2 LINE L2 -49 3223 3136 551 318 17 3 chr9 119495426 119495641 -22775803 - MIR SINE MIR -17 245 31 334 318 80 11 chr9 119496514 119496690 -22774754 + MIR SINE MIR 53 240 -22 233 0 62 0 chr9 119500417 119500449 -22770995 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 355 176 0 66 chr9 119501257 119501348 -22770096 + MIR SINE MIR 85 169 -93 299 202 11 0 chr9 119501907 119502001 -22769443 + (TA)n Simple_repeat Simple_repeat 2 96 0 204 182 0 0 chr9 119502246 119502290 -22769154 + A-rich Low_complexity Low_complexity 1 44 0 245 346 98 7 chr9 119502861 119503014 -22768430 - Tigger8 DNA MER2_type -18 648 482 251 214 14 0 chr9 119503209 119503279 -22768165 + (TA)n Simple_repeat Simple_repeat 2 72 0 270 0 0 0 chr9 119503282 119503312 -22768132 + (CA)n Simple_repeat Simple_repeat 1 30 0 439 289 33 0 chr9 119503414 119503566 -22767878 + MIR SINE MIR 75 231 -31 548 331 45 7 chr9 119503588 119503857 -22767587 - Tigger8 DNA MER2_type -338 328 50 300 158 0 0 chr9 119504266 119504323 -22767121 + (CA)n Simple_repeat Simple_repeat 2 58 0 624 183 38 30 chr9 119505457 119505588 -22765856 + L1ME3A LINE L1 6034 6165 -5 284 277 45 9 chr9 119505844 119505963 -22765481 + MIR SINE MIR 38 159 -72 2109 137 10 0 chr9 119506183 119506482 -22764962 - AluSx SINE Alu -10 302 1 182 304 51 13 chr9 119507342 119507421 -22764023 - L2 LINE L2 -9 3304 3223 201 231 8 143 chr9 119507544 119507740 -22763704 - L2 LINE L2 -309 2963 2796 2177 143 24 0 chr9 119507778 119508106 -22763338 - THE1B LTR MaLR -1 363 28 1293 257 48 14 chr9 119508120 119508474 -22762970 - LTR16C LTR ERVL -29 462 97 1048 193 11 11 chr9 119509214 119509401 -22762043 - MER5A DNA MER1_type 0 189 3 21 0 0 0 chr9 119509471 119509492 -22761952 + AT_rich Low_complexity Low_complexity 1 21 0 298 370 10 21 chr9 119509611 119509803 -22761641 - L2 LINE L2 -256 3016 2827 247 305 110 25 chr9 119509792 119509910 -22761534 - L2 LINE L2 -208 3064 2937 * 240 122 0 0 chr9 119510244 119510285 -22761159 + (CA)n Simple_repeat Simple_repeat 2 42 0 583 333 4 18 chr9 119510925 119511150 -22760294 - MIR SINE MIR -1 261 40 624 203 145 29 chr9 119512466 119512707 -22758737 + MER33 DNA MER1_type 3 271 -53 2116 124 20 0 chr9 119512709 119513015 -22758429 + AluSx SINE Alu 1 312 0 395 194 0 0 chr9 119513052 119513119 -22758325 + MER33 DNA MER1_type 258 324 0 241 338 174 76 chr9 119513139 119513536 -22757908 + L2 LINE L2 2836 3271 -1 926 206 33 6 chr9 119513588 119513768 -22757676 + MER58A DNA MER1_type 29 213 -11 515 183 59 137 chr9 119513801 119513943 -22757501 + FRAM SINE Alu 18 149 -163 354 23 0 0 chr9 119513943 119513986 -22757458 + (CA)n Simple_repeat Simple_repeat 2 44 0 330 224 0 0 chr9 119514292 119514359 -22757085 - L2 LINE L2 -3 3310 3244 209 314 43 0 chr9 119514417 119514487 -22756957 + L2 LINE L2 3200 3272 0 547 295 134 9 chr9 119514607 119514831 -22756613 + MIR SINE MIR 11 262 0 200 350 67 25 chr9 119515613 119515733 -22755711 - L2 LINE L2 -9 3263 3139 204 179 0 0 chr9 119517118 119517157 -22754287 + A-rich Low_complexity Low_complexity 1 39 0 212 300 0 0 chr9 119517164 119517214 -22754230 - L2 LINE L2 -13 3259 3210 329 243 143 43 chr9 119517741 119517881 -22753563 - MER5A DNA MER1_type -2 187 34 237 312 162 9 chr9 119518332 119518446 -22752998 + MIR3 SINE MIR 55 184 -52 * 368 311 117 18 chr9 119518441 119518664 -22752780 + MIR SINE MIR 6 248 -14 225 343 168 14 chr9 119519038 119519181 -22752263 - L2 LINE L2 -12 3260 3096 183 328 80 8 chr9 119519390 119519515 -22751929 - MIR3 SINE MIR -23 185 52 381 22 0 0 chr9 119519584 119519630 -22751814 + (CA)n Simple_repeat Simple_repeat 1 46 0 371 321 83 30 chr9 119520377 119520545 -22750899 - MIR SINE MIR -1 261 85 223 280 21 21 chr9 119520862 119520955 -22750489 - MIR SINE MIR -72 136 44 309 243 229 37 chr9 119520966 119521180 -22750264 + MIR SINE MIR 1 255 -7 282 116 0 0 chr9 119521207 119521250 -22750194 + (GGA)n Simple_repeat Simple_repeat 2 44 0 295 353 108 4 chr9 119521598 119521830 -22749614 + L2 LINE L2 2503 2758 -556 1664 173 3 27 chr9 119522090 119522385 -22749059 + AluJb SINE Alu 1 288 -24 431 217 119 0 chr9 119522393 119522536 -22748908 - MIR SINE MIR -1 261 102 229 306 56 14 chr9 119522623 119522695 -22748749 - MIR SINE MIR -185 77 3 316 313 48 54 chr9 119522898 119523064 -22748380 + MIR SINE MIR 44 208 -54 24 0 0 0 chr9 119523623 119523647 -22747797 + AT_rich Low_complexity Low_complexity 1 24 0 343 319 85 14 chr9 119523684 119523825 -22747619 - MIR SINE MIR -71 191 41 230 83 0 0 chr9 119524585 119524621 -22746823 + L1MA10 LINE L1 6298 6333 -1 221 339 182 0 chr9 119524653 119524774 -22746670 + L2 LINE L2 2570 2712 -602 305 324 94 94 chr9 119524935 119524992 -22746452 + L2 LINE L2 2915 2971 -301 1829 122 44 37 chr9 119524992 119525286 -22746158 - AluSx SINE Alu -15 297 2 305 324 94 94 chr9 119525286 119525568 -22745876 + L2 LINE L2 2970 3254 -18 306 241 60 83 chr9 119526920 119527053 -22744391 - MIR SINE MIR -58 150 21 195 296 204 15 chr9 119527177 119527309 -22744135 + MIR SINE MIR 106 262 0 681 155 63 194 chr9 119527508 119527760 -22743684 - MER20 DNA MER1_type 0 219 1 287 298 0 44 chr9 119527760 119527866 -22743578 - MIR3 SINE MIR -48 160 58 290 319 22 0 chr9 119528277 119528368 -22743076 + MIR SINE MIR 53 145 -117 222 263 76 76 chr9 119528522 119528640 -22742804 - L2 LINE L2 -188 3084 2967 2188 112 7 0 chr9 119528641 119528935 -22742509 + AluSq SINE Alu 1 296 -17 552 250 147 30 chr9 119529077 119529309 -22742135 + MIR SINE MIR 4 262 0 185 295 45 36 chr9 119529319 119529431 -22742013 - L2 LINE L2 -549 2765 2653 2330 105 0 0 chr9 119529454 119529758 -22741686 + AluSq SINE Alu 1 304 -9 431 279 49 8 chr9 119529859 119529981 -22741463 + MIR SINE MIR 119 245 -17 285 258 15 0 chr9 119529995 119530061 -22741383 + (CAT)n Simple_repeat Simple_repeat 2 68 0 197 280 65 43 chr9 119530419 119530512 -22740932 - L2 LINE L2 -474 2840 2746 223 313 36 45 chr9 119530624 119530736 -22740708 - MIR SINE MIR -62 146 36 * 329 348 15 13 chr9 119530720 119530870 -22740574 + MIR SINE MIR 5 150 -65 461 329 32 0 chr9 119530985 119531140 -22740304 + MIR SINE MIR 93 252 -10 269 321 170 25 chr9 119531725 119532002 -22739442 + L3 LINE CR1 915 1231 -346 251 184 92 26 chr9 119532065 119532141 -22739303 - MIR SINE MIR -1 261 181 252 355 41 8 chr9 119532279 119532400 -22739044 + L3 LINE CR1 1338 1462 -115 2053 105 0 0 chr9 119533060 119533326 -22738118 + AluSx SINE Alu 16 281 -31 386 38 0 19 chr9 119533329 119533382 -22738062 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 250 207 124 77 chr9 119533821 119533990 -22737454 + HAL1b LINE L1 1172 1348 0 442 203 164 23 chr9 119535560 119535688 -22735756 - MIR3 SINE MIR -25 183 38 389 251 35 143 chr9 119536174 119536377 -22735067 + MER5A DNA MER1_type 9 189 0 359 324 118 0 chr9 119536418 119536554 -22734890 + L2 LINE L2 3121 3272 0 4644 12 24 0 chr9 119537104 119537608 -22733836 + L1PA3 LINE L1 5640 6155 0 355 282 40 40 chr9 119537619 119537743 -22733701 - MIR3 SINE MIR -49 159 36 204 306 65 0 chr9 119538387 119538449 -22732995 + MIR SINE MIR 69 134 -74 469 338 47 27 chr9 119538509 119538886 -22732558 + L2 LINE L2 2522 2907 -365 886 204 113 123 chr9 119538886 119539062 -22732382 - MER113 DNA MER1_type? 0 521 345 2117 116 7 16 chr9 119539062 119539365 -22732079 + AluSq SINE Alu 1 300 -13 886 204 113 123 chr9 119539365 119539592 -22731852 - MER113 DNA MER1_type? -176 345 122 2862 3 0 0 chr9 119539592 119539897 -22731547 - AluYa5 SINE Alu -6 305 1 886 204 113 123 chr9 119539897 119540012 -22731432 - MER113 DNA MER1_type? -399 122 7 185 320 150 10 chr9 119540282 119540382 -22731062 + L2 LINE L2 3200 3313 0 252 330 43 9 chr9 119540630 119540745 -22730699 + MIR SINE MIR 31 149 -59 258 303 103 28 chr9 119541328 119541473 -22729971 + MIR SINE MIR 88 243 -19 31 0 0 0 chr9 119541935 119541966 -22729478 + AT_rich Low_complexity Low_complexity 1 31 0 183 307 13 67 chr9 119542025 119542100 -22729344 + L2 LINE L2 3116 3186 -86 380 335 60 11 chr9 119542299 119542481 -22728963 + MER117 DNA MER1_type 1 191 -6 375 302 50 14 chr9 119543128 119543267 -22728177 - MIR SINE MIR -92 170 27 786 290 106 41 chr9 119543325 119543767 -22727677 - L2 LINE L2 0 3313 2843 609 311 68 17 chr9 119544391 119544626 -22726818 - MIR SINE MIR -5 257 11 233 312 52 98 chr9 119544744 119544917 -22726527 - MIR SINE MIR -35 173 9 350 266 46 9 chr9 119545069 119545178 -22726266 + MIR3 SINE MIR 7 119 -89 268 274 0 16 chr9 119545520 119545582 -22725862 + L2 LINE L2 3253 3313 0 436 273 21 14 chr9 119546033 119546176 -22725268 + MIR SINE MIR 48 191 -71 180 125 0 0 chr9 119546494 119546526 -22724918 + (GA)n Simple_repeat Simple_repeat 1 32 0 626 113 9 0 chr9 119546592 119546707 -22724737 + (GA)n Simple_repeat Simple_repeat 1 116 0 291 286 71 43 chr9 119546827 119546967 -22724477 - MIR3 SINE MIR -45 163 20 272 275 81 49 chr9 119547455 119547702 -22723742 + L2 LINE L2 2854 3108 -164 215 262 33 49 chr9 119547864 119547925 -22723519 + MIR3 SINE MIR 101 160 -48 382 317 130 24 chr9 119547949 119548157 -22723287 + MIR SINE MIR 6 235 -27 413 304 66 33 chr9 119548963 119549144 -22722300 + MIR SINE MIR 14 200 -62 616 249 103 38 chr9 119549389 119549521 -22721923 + MIR SINE MIR 13 166 -96 1942 149 0 16 chr9 119549521 119549830 -22721614 + AluJb SINE Alu 1 304 -8 616 249 103 38 chr9 119549830 119549910 -22721534 + MIR SINE MIR 166 239 -23 1149 210 143 77 chr9 119550010 119550491 -22720953 + MLT1G LTR MaLR 38 590 0 914 217 45 54 chr9 119550511 119550732 -22720712 + MER58A DNA MER1_type 4 222 -2 285 202 293 0 chr9 119550767 119550866 -22720578 - MIR SINE MIR -56 206 79 299 317 41 24 chr9 119551797 119551920 -22719524 - L2 LINE L2 -25 3288 3164 216 294 0 0 chr9 119552337 119552404 -22719040 + C-rich Low_complexity Low_complexity 1 67 0 262 268 154 37 chr9 119552735 119552901 -22718543 + MIR SINE MIR 30 215 -45 426 329 40 9 chr9 119552911 119553136 -22718308 - MIR SINE MIR -11 251 20 466 237 52 37 chr9 119553624 119553710 -22717734 + MIR SINE MIR 105 195 -67 2504 80 0 3 chr9 119553710 119554021 -22717423 + AluY SINE Alu 2 311 0 466 237 52 37 chr9 119554021 119554069 -22717375 + MIR SINE MIR 195 241 -21 225 257 157 14 chr9 119554196 119554266 -22717178 + MIR SINE MIR 58 137 -71 384 290 139 20 chr9 119554435 119554687 -22716757 + L1MB7 LINE L1 3526 3807 -2339 318 240 42 31 chr9 119554708 119554804 -22716640 + L1MB7 LINE L1 4076 4172 -1974 5465 53 16 0 chr9 119554806 119555448 -22715996 + L1PA5 LINE L1 5503 6154 0 2446 106 0 0 chr9 119555464 119555776 -22715668 + AluSx SINE Alu 1 312 0 264 264 9 0 chr9 119556134 119556240 -22715204 + L1MB7 LINE L1 4151 4257 -1889 * 7379 138 17 14 chr9 119556220 119556870 -22714574 + L1MA3 LINE L1 3949 4596 -1709 2141 143 71 34 chr9 119556870 119557221 -22714223 - THE1B LTR MaLR 0 364 1 7379 138 17 14 chr9 119557221 119558918 -22712526 + L1MA3 LINE L1 4596 6305 0 5009 176 32 23 chr9 119558906 119560818 -22710626 + L1MB7 LINE L1 4244 6164 -20 * 316 306 86 27 chr9 119561137 119561323 -22710121 + MIR SINE MIR 65 261 -1 647 268 135 38 chr9 119561441 119561781 -22709663 + L2 LINE L2 2938 3310 -3 219 295 0 0 chr9 119561791 119561886 -22709558 + (TA)n Simple_repeat Simple_repeat 1 95 0 411 255 94 20 chr9 119562103 119562252 -22709192 + MLT1I LTR MaLR 244 403 -6 494 312 69 9 chr9 119562321 119562539 -22708905 - MIR SINE MIR -12 250 20 647 283 16 0 chr9 119562634 119562818 -22708626 - MIR SINE MIR -73 189 3 387 0 0 0 chr9 119563186 119563229 -22708215 + (TG)n Simple_repeat Simple_repeat 2 44 0 596 312 74 53 chr9 119563266 119564024 -22707420 + L2 LINE L2 2267 3054 -218 194 237 0 85 chr9 119564144 119564203 -22707241 + L2 LINE L2 3137 3190 -82 995 182 19 67 chr9 119564236 119564445 -22706999 - AluJb SINE Alu -113 199 1 255 328 138 6 chr9 119564753 119564927 -22706517 + MIR SINE MIR 66 262 0 24 32 0 0 chr9 119565993 119566024 -22705420 + AT_rich Low_complexity Low_complexity 1 31 0 234 111 0 0 chr9 119567229 119567265 -22704179 + MIR SINE MIR 117 152 -110 702 291 28 71 chr9 119567434 119567667 -22703777 + MLT1K LTR MaLR 211 422 -166 2449 81 0 0 chr9 119567667 119567962 -22703482 - AluSc SINE Alu -14 295 1 702 291 28 71 chr9 119567962 119568120 -22703324 + MLT1K LTR MaLR 422 585 -3 197 265 10 61 chr9 119568129 119568227 -22703217 + MIR SINE MIR 162 254 -8 238 365 48 32 chr9 119568965 119569217 -22702227 + L2 LINE L2 2588 2843 -471 218 328 79 74 chr9 119569259 119569448 -22701996 + L2 LINE L2 2902 3091 -181 433 310 6 35 chr9 119569881 119570052 -22701392 + MIR SINE MIR 3 168 -94 2276 107 3 0 chr9 119570320 119570628 -22700816 + AluSx SINE Alu 1 309 -3 678 324 36 9 chr9 119570783 119571008 -22700436 + MIR SINE MIR 12 242 -20 274 299 50 43 chr9 119572132 119572307 -22699137 - MIR SINE MIR -61 147 14 575 279 43 64 chr9 119572973 119573019 -22698425 + MIR SINE MIR 23 68 -194 2090 110 0 70 chr9 119573019 119573346 -22698098 + AluSx SINE Alu 1 304 -8 575 279 43 64 chr9 119573346 119573532 -22697912 + MIR SINE MIR 68 250 -12 2250 97 3 17 chr9 119574013 119574312 -22697132 + AluSx SINE Alu 1 295 -17 263 321 101 38 chr9 119574348 119574557 -22696887 - MIR SINE MIR -22 240 19 288 276 60 8 chr9 119574634 119574768 -22696676 + MIR3 SINE MIR 35 175 -33 355 296 71 30 chr9 119575092 119575261 -22696183 - MIR3 SINE MIR -3 205 30 252 289 97 0 chr9 119575336 119575473 -22695971 + MIR3 SINE MIR 6 162 -46 540 238 103 0 chr9 119575531 119575657 -22695787 + Charlie8 DNA MER1_type 72 210 -2207 307 340 61 20 chr9 119575868 119576115 -22695329 - L3 LINE CR1 -202 1375 1119 1318 228 129 26 chr9 119576372 119576789 -22694655 - MLT1C LTR MaLR -2 465 6 298 289 35 9 chr9 119576925 119577039 -22694405 + L2 LINE L2 3180 3296 -17 333 320 11 6 chr9 119578026 119578136 -22693308 + GA-rich Low_complexity Low_complexity 1 114 -62 869 143 0 0 chr9 119578136 119578269 -22693175 + FLAM_C SINE Alu 1 133 0 333 320 11 6 chr9 119578269 119578333 -22693111 + GA-rich Low_complexity Low_complexity 114 176 0 630 255 12 21 chr9 119578350 119578680 -22692764 + GA-rich Low_complexity Low_complexity 1 327 0 2334 108 3 0 chr9 119579110 119579416 -22692028 + AluSg SINE Alu 1 307 -3 251 282 39 19 chr9 119579473 119579576 -22691868 - MIR SINE MIR -117 145 41 630 211 72 0 chr9 119580294 119580446 -22690998 + MIR SINE MIR 34 196 -66 638 171 6 29 chr9 119580455 119580625 -22690819 + GA-rich Low_complexity Low_complexity 2 167 0 585 308 142 22 chr9 119580836 119581251 -22690193 - L2 LINE L2 -8 3305 2841 601 231 28 55 chr9 119581373 119581505 -22689939 - MIR SINE MIR -12 250 123 1846 161 27 7 chr9 119581505 119581804 -22689640 + AluJb SINE Alu 3 307 -5 601 231 28 55 chr9 119581804 119581853 -22689591 - MIR SINE MIR -139 123 74 525 270 32 85 chr9 119582291 119582442 -22689002 + MIR SINE MIR 15 149 -113 2401 61 0 0 chr9 119582442 119582747 -22688697 + AluY SINE Alu 1 305 0 525 270 32 85 chr9 119582747 119582842 -22688602 + MIR SINE MIR 149 248 -14 308 360 6 6 chr9 119584674 119584838 -22686606 - MIR SINE MIR -79 183 20 381 302 14 14 chr9 119585612 119585751 -22685693 - MIR SINE MIR -91 171 33 404 252 98 28 chr9 119586426 119586569 -22684875 - MIR SINE MIR -70 192 40 275 300 60 10 chr9 119586603 119586703 -22684741 + L2 LINE L2 3168 3272 0 215 259 0 9 chr9 119586708 119586816 -22684628 + (TGAA)n Simple_repeat Simple_repeat 4 110 0 242 330 17 8 chr9 119586847 119586965 -22684479 + (TGAA)n Simple_repeat Simple_repeat 2 120 0 213 361 8 0 chr9 119587451 119587584 -22683860 + MIR3 SINE MIR 75 208 0 248 270 40 14 chr9 119588087 119588161 -22683283 + MIR SINE MIR 121 196 -66 227 340 19 19 chr9 119588227 119588330 -22683114 + MIR3 SINE MIR 54 156 -52 284 248 88 22 chr9 119588330 119588467 -22682977 + MER117 DNA MER1_type 2 147 -50 333 331 31 16 chr9 119588676 119588803 -22682641 + MIR SINE MIR 19 147 -61 537 269 87 0 chr9 119588844 119589063 -22682381 + L1ME4a LINE L1 5657 5894 -227 241 294 15 0 chr9 119589290 119589358 -22682086 + MIR3 SINE MIR 137 205 -3 1626 170 57 20 chr9 119589717 119590017 -22681427 - AluJb SINE Alu -1 311 1 288 53 0 0 chr9 119590663 119590701 -22680743 + (A)n Simple_repeat Simple_repeat 1 38 0 2259 127 44 11 chr9 119590904 119591267 -22680177 - THE1C LTR MaLR 0 375 1 207 229 49 0 chr9 119591654 119591715 -22679729 - MIR SINE MIR -72 190 127 502 252 159 5 chr9 119592237 119592451 -22678993 + MIR SINE MIR 5 251 -11 2312 115 0 0 chr9 119592467 119592772 -22678672 - AluSx SINE Alu 0 312 8 359 338 14 14 chr9 119592820 119592965 -22678479 - MIR3 SINE MIR -31 177 33 262 253 10 40 chr9 119593982 119594081 -22677363 + CT-rich Low_complexity Low_complexity 4 99 0 239 321 132 19 chr9 119594568 119594780 -22676664 + MIR SINE MIR 20 255 -7 260 231 15 0 chr9 119594925 119594990 -22676454 + GA-rich Low_complexity Low_complexity 1 66 0 208 280 20 0 chr9 119595544 119595594 -22675850 - L2 LINE L2 -8 3264 3214 396 337 24 18 chr9 119595625 119595794 -22675650 + MLT1K LTR MaLR 2 171 -417 437 263 53 20 chr9 119595872 119596024 -22675420 + MLT1K LTR MaLR 432 588 0 339 338 26 7 chr9 119596024 119596175 -22675269 - MIR SINE MIR -89 173 20 858 308 141 5 chr9 119596253 119596694 -22674750 + L2 LINE L2 2813 3313 0 685 323 35 40 chr9 119596753 119597042 -22674402 - LTR16C LTR ERVL -4 487 199 2723 104 0 3 chr9 119597042 119597407 -22674037 - THE1B LTR MaLR 0 364 1 685 323 35 40 chr9 119597407 119597520 -22673924 - LTR16C LTR ERVL -292 199 87 194 376 17 0 chr9 119597747 119597864 -22673580 - L2 LINE L2 -13 3259 3141 342 302 43 29 chr9 119598487 119598626 -22672818 - MIR SINE MIR -110 152 12 193 171 0 49 chr9 119598651 119598692 -22672752 + MIR SINE MIR 110 148 -114 1643 180 0 55 chr9 119598696 119599007 -22672437 + AluJo SINE Alu 1 294 -18 403 329 62 44 chr9 119599381 119599721 -22671723 + L2 LINE L2 2967 3312 -1 438 275 98 52 chr9 119601030 119601223 -22670221 + MIR SINE MIR 47 248 -14 3808 12 0 0 chr9 119601606 119602029 -22669415 - L1PA3 LINE L1 -244 5911 5489 1975 38 0 0 chr9 119602029 119602263 -22669181 + L1PA3 LINE L1 5921 6155 0 213 175 0 0 chr9 119602539 119602579 -22668865 + (TG)n Simple_repeat Simple_repeat 1 40 0 * 294 162 0 0 chr9 119602578 119602652 -22668792 + GA-rich Low_complexity Low_complexity 1 74 0 188 100 25 0 chr9 119602681 119602721 -22668723 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 212 130 22 0 chr9 119602720 119602766 -22668678 + GA-rich Low_complexity Low_complexity 2 48 0 335 261 33 39 chr9 119602839 119603019 -22668425 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 937 124 0 32 chr9 119603067 119603253 -22668191 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 824 162 23 6 chr9 119603258 119603603 -22667841 + GA-rich Low_complexity Low_complexity 1 351 0 238 146 18 18 chr9 119604033 119604088 -22667356 + (CATA)n Simple_repeat Simple_repeat 3 57 0 328 134 0 75 chr9 119604205 119604272 -22667172 - MIR SINE MIR -70 192 131 190 286 16 16 chr9 119604424 119604487 -22666957 - MIR3 SINE MIR -33 175 113 249 227 0 213 chr9 119604492 119604717 -22666727 - MER91B DNA MER1_type -7 183 7 1333 185 5 0 chr9 119605096 119605312 -22666132 + AluJb SINE Alu 85 301 -11 297 313 31 0 chr9 119605346 119605442 -22666002 - MIR SINE MIR -110 152 54 829 295 111 27 chr9 119606137 119606588 -22664856 + L2 LINE L2 2819 3307 -6 345 341 7 15 chr9 119606647 119606782 -22664662 - MIR3 SINE MIR -65 143 10 212 289 62 0 chr9 119607243 119607340 -22664104 + MIR SINE MIR 35 137 -71 396 328 39 28 chr9 119607438 119607653 -22663791 - MIR SINE MIR -25 237 21 357 240 70 0 chr9 119607693 119607793 -22663651 - MIR3 SINE MIR -20 188 82 203 270 54 14 chr9 119607964 119608038 -22663406 + L2 LINE L2 3196 3272 0 2277 100 3 10 chr9 119608274 119608584 -22662860 - AluSp SINE Alu -1 312 5 215 321 0 37 chr9 119608592 119608673 -22662771 + MIR SINE MIR 109 186 -76 240 59 0 0 chr9 119608867 119608901 -22662543 + (TG)n Simple_repeat Simple_repeat 2 35 0 206 259 58 93 chr9 119609048 119609187 -22662257 - MIR3 SINE MIR -69 139 6 42372 62 4 1 chr9 119609413 119615531 -22655913 - L1PA5 LINE L1 -7 6147 11 452 257 156 55 chr9 119615686 119616103 -22655341 + MLT1L LTR MaLR 151 609 -6 854 224 17 6 chr9 119616262 119616441 -22655003 - MER5A DNA MER1_type -8 181 1 22 0 0 0 chr9 119616468 119616490 -22654954 + AT_rich Low_complexity Low_complexity 1 22 0 1188 143 10 0 chr9 119616880 119617076 -22654368 + L1PB1 LINE L1 3 200 -6663 14717 191 29 9 chr9 119617078 119622207 -22649237 + L1PB1 LINE L1 636 6044 -823 198 0 0 0 chr9 119622207 119622229 -22649215 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 14717 191 29 9 chr9 119622229 119623068 -22648376 + L1PB1 LINE L1 6044 6865 -2 200 114 0 29 chr9 119623084 119623119 -22648325 + (GAA)n Simple_repeat Simple_repeat 3 36 0 235 281 127 40 chr9 119623150 119623276 -22648168 - MIR SINE MIR -65 143 16 353 340 65 0 chr9 119623872 119624025 -22647419 + MIR SINE MIR 85 247 -15 291 292 124 12 chr9 119624876 119625037 -22646407 + MIR SINE MIR 2 180 -82 2673 124 0 5 chr9 119625313 119625701 -22645743 + THE1-int LTR MaLR 19 404 -1176 288 239 42 0 chr9 119626648 119626719 -22644725 + MIR SINE MIR 117 190 -72 1853 160 0 33 chr9 119626727 119627033 -22644411 + AluSx SINE Alu 1 296 -16 4946 151 59 8 chr9 119627242 119628050 -22643394 + L1MA8 LINE L1 4790 5555 -736 1699 165 81 34 chr9 119628050 119628408 -22643036 + THE1C LTR MaLR 1 375 0 10041 130 34 40 chr9 119628410 119629997 -22641447 + THE1C-int LTR MaLR 3 1580 0 2085 133 67 25 chr9 119629997 119630357 -22641087 + THE1C LTR MaLR 1 375 0 4946 151 59 8 chr9 119630357 119630492 -22640952 + L1MA8 LINE L1 5555 5682 -609 513 0 0 0 chr9 119630492 119630549 -22640895 + (TA)n Simple_repeat Simple_repeat 2 58 0 4946 151 59 8 chr9 119630549 119631012 -22640432 + L1MA8 LINE L1 5682 6278 -13 395 274 77 39 chr9 119631165 119631373 -22640071 + L2 LINE L2 3098 3313 0 40201 60 4 0 chr9 119631770 119637602 -22633842 - L1PA5 LINE L1 -6 6148 297 598 82 0 0 chr9 119637602 119637675 -22633769 - L1PA5 LINE L1 -6063 83 11 396 330 78 11 chr9 119638283 119638474 -22632970 - MIR SINE MIR -50 212 9 493 238 6 11 chr9 119638592 119638773 -22632671 + GA-rich Low_complexity Low_complexity 1 180 0 304 296 35 35 chr9 119638783 119638898 -22632546 + MER5A DNA MER1_type 73 187 -2 1132 268 84 73 chr9 119639055 119639405 -22632039 + HsTC2a DNA Tc2 1 360 -1540 2040 143 44 19 chr9 119639405 119639768 -22631676 + L1MB8 LINE L1 5807 6178 0 1132 268 84 73 chr9 119639768 119639940 -22631504 + HsTC2a DNA Tc2 360 529 -215 582 138 32 0 chr9 119639956 119640050 -22631394 - Tigger7 DNA MER2_type 0 2487 2391 * 1314 185 122 0 chr9 119640049 119640287 -22631157 - Tigger7 DNA MER2_type -466 267 1 484 225 82 22 chr9 119640287 119640460 -22630984 + HsTC2a DNA Tc2 561 744 0 1474 170 8 4 chr9 119642230 119642477 -22628967 - L1MD1 LINE L1 -1 6241 5994 302 217 14 0 chr9 119642627 119642696 -22628748 - L1MD1 LINE L1 -525 5596 5527 1860 153 20 10 chr9 119643038 119643339 -22628105 + AluSx SINE Alu 1 304 -8 1383 165 4 40 chr9 119643602 119643851 -22627593 + AluJo SINE Alu 59 298 -14 204 260 39 13 chr9 119644489 119644566 -22626878 + MIR3 SINE MIR 128 206 -2 339 263 0 0 chr9 119646116 119646192 -22625252 - L2 LINE L2 -4 3268 3193 204 204 0 23 chr9 119646226 119646270 -22625174 + MIR SINE MIR 83 125 -83 501 265 29 29 chr9 119646714 119646884 -22624560 - MIR SINE MIR -73 189 20 309 304 55 39 chr9 119647145 119647334 -22624110 - MIR SINE MIR -54 154 3 398 289 21 15 chr9 119647691 119647844 -22623600 - MIR SINE MIR -64 144 36 468 319 36 48 chr9 119647852 119648103 -22623341 + MIR SINE MIR 1 248 -14 253 260 26 120 chr9 119648677 119648814 -22622630 + MIR3 SINE MIR 30 146 -62 535 262 11 75 chr9 119648814 119648861 -22622583 - MER5B DNA MER1_type 0 178 130 2192 116 0 3 chr9 119648861 119649171 -22622273 - AluSq SINE Alu -4 309 1 535 262 11 75 chr9 119649171 119649310 -22622134 - MER5B DNA MER1_type -48 130 4 253 260 26 120 chr9 119649310 119649364 -22622080 + MIR3 SINE MIR 146 203 -5 270 344 61 30 chr9 119649423 119649554 -22621890 - MIR3 SINE MIR -34 174 40 271 355 18 6 chr9 119649580 119649746 -22621698 + A-rich Low_complexity Low_complexity 2 169 0 226 33 0 0 chr9 119650287 119650317 -22621127 - MADE1 DNA Mariner -34 46 17 227 296 86 62 chr9 119651474 119651636 -22619808 + MER5A DNA MER1_type 2 167 -22 462 36 0 0 chr9 119652388 119652444 -22619000 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 295 354 9 9 chr9 119652983 119653096 -22618348 - MIR3 SINE MIR -94 114 2 280 274 80 35 chr9 119653979 119654092 -22617352 + MIR SINE MIR 16 133 -75 315 104 0 0 chr9 119654352 119654400 -22617044 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1425 199 40 73 chr9 119654911 119655333 -22616111 - MER113 DNA MER1_type? -113 408 1 504 313 7 14 chr9 119656409 119656553 -22614891 - L2 LINE L2 -9 3263 3121 594 152 111 0 chr9 119656753 119656852 -22614592 + FLAM_C SINE Alu 2 111 -32 22 0 0 0 chr9 119656865 119656887 -22614557 + AT_rich Low_complexity Low_complexity 1 22 0 2157 69 4 11 chr9 119657376 119657651 -22613793 + AluY SINE Alu 39 311 0 280 284 172 0 chr9 119657668 119657784 -22613660 + MIR SINE MIR 11 146 -116 199 336 140 19 chr9 119658437 119658544 -22612900 - L2 LINE L2 -5 3267 3148 345 353 33 19 chr9 119658666 119658863 -22612581 - MIR SINE MIR -20 242 43 332 266 141 8 chr9 119659189 119659317 -22612127 + MIR SINE MIR 112 256 -6 458 248 32 16 chr9 119659318 119659443 -22612001 - L2 LINE L2 -2 3311 3185 224 262 60 24 chr9 119659735 119659819 -22611625 - L2 LINE L2 -8 3264 3178 636 245 36 63 chr9 119659828 119660081 -22611363 + MER46C DNA MER2_type 80 325 -13 549 311 40 0 chr9 119660088 119660239 -22611205 - MIR SINE MIR -104 158 2 478 283 90 26 chr9 119660246 119660479 -22610965 - MIR SINE MIR -13 249 2 229 320 26 0 chr9 119660589 119660667 -22610777 + L2 LINE L2 2647 2726 -588 220 247 86 49 chr9 119660704 119660785 -22610659 - L2 LINE L2 -40 3232 3149 220 208 19 19 chr9 119660852 119660905 -22610539 + CT-rich Low_complexity Low_complexity 6 58 0 361 294 59 20 chr9 119661027 119661180 -22610264 + L2 LINE L2 3154 3312 -1 186 410 37 8 chr9 119661630 119661764 -22609680 + L2 LINE L2 3134 3271 -1 461 227 35 14 chr9 119662573 119662714 -22608730 - MER103 DNA DNA -5 161 18 2102 92 39 29 chr9 119662852 119663158 -22608286 + AluSx SINE Alu 1 309 -3 522 288 0 0 chr9 119663275 119663400 -22608044 - L2 LINE L2 -7 3306 3182 2494 87 0 0 chr9 119663491 119663802 -22607642 + AluY SINE Alu 1 311 0 762 217 102 161 chr9 119663869 119664330 -22607114 + L2 LINE L2 2880 3313 0 373 319 26 0 chr9 119664450 119664563 -22606881 - MIR SINE MIR -111 151 36 215 239 9 0 chr9 119665103 119665212 -22606232 + (TTCA)n Simple_repeat Simple_repeat 1 110 0 193 313 134 0 chr9 119665313 119665380 -22606064 + MIR3 SINE MIR 81 156 -52 399 21 0 0 chr9 119665608 119665656 -22605788 + (CA)n Simple_repeat Simple_repeat 1 48 0 324 0 0 0 chr9 119665749 119665785 -22605659 + (TC)n Simple_repeat Simple_repeat 1 36 0 387 56 0 0 chr9 119665786 119665840 -22605604 + (TA)n Simple_repeat Simple_repeat 2 55 0 513 155 0 0 chr9 119665840 119665911 -22605533 - AluSg/x SINE Alu -27 285 215 1195 161 0 62 chr9 119665956 119666180 -22605264 - AluJb SINE Alu -102 210 1 342 253 58 0 chr9 119666183 119666270 -22605174 + MER112 DNA MER1_type 157 248 -12 305 302 108 16 chr9 119666816 119666945 -22604499 + L2 LINE L2 3158 3298 -15 650 270 42 32 chr9 119667032 119667426 -22604018 + LTR16B LTR ERVL 40 464 0 238 220 0 0 chr9 119667430 119667480 -22603964 - MIR SINE MIR -62 146 97 905 246 9 14 chr9 119667504 119667715 -22603729 + MER63A DNA MER1_type 1 210 0 204 299 93 28 chr9 119667989 119668096 -22603348 - L2 LINE L2 -616 2698 2585 219 302 115 29 chr9 119668172 119668311 -22603133 - MIR SINE MIR -3 259 109 182 333 0 0 chr9 119668422 119668467 -22602977 - MIR SINE MIR -117 91 47 36 23 0 0 chr9 119668735 119668778 -22602666 + AT_rich Low_complexity Low_complexity 1 43 0 525 351 13 9 chr9 119669580 119669805 -22601639 + MIR SINE MIR 36 261 -1 226 262 180 0 chr9 119669849 119669910 -22601534 + MIR3 SINE MIR 115 186 -22 468 316 90 9 chr9 119670438 119670650 -22600794 + MIR SINE MIR 28 256 -6 2339 57 0 30 chr9 119670793 119671094 -22600350 - AluY SINE Alu -19 292 1 300 111 0 0 chr9 119673406 119673451 -22597993 + (CA)n Simple_repeat Simple_repeat 2 46 0 593 221 14 14 chr9 119673752 119673892 -22597552 + MER103 DNA DNA 8 147 -19 308 268 73 49 chr9 119674087 119674210 -22597234 - MIR SINE MIR -92 170 45 215 318 8 56 chr9 119674390 119674493 -22596951 - L2 LINE L2 -186 3086 2989 949 256 57 0 chr9 119674493 119674704 -22596740 - MER58A DNA MER1_type 0 224 2 215 318 8 56 chr9 119674704 119674726 -22596718 - L2 LINE L2 -283 2989 2967 24 32 0 0 chr9 119675616 119675647 -22595797 + AT_rich Low_complexity Low_complexity 1 31 0 530 299 54 27 chr9 119676618 119676839 -22594605 - MIR SINE MIR -21 241 15 811 270 54 0 chr9 119677357 119677561 -22593883 - MIR SINE MIR 0 262 48 1773 169 10 19 chr9 119677644 119677958 -22593486 + AluJb SINE Alu 1 311 -1 298 310 78 16 chr9 119678059 119678188 -22593256 - MIR SINE MIR -21 241 105 185 327 116 73 chr9 119678301 119678604 -22592840 - L2 LINE L2 -432 2882 2567 395 285 44 63 chr9 119678857 119679015 -22592429 - MIR SINE MIR -74 188 34 432 0 0 0 chr9 119679017 119679065 -22592379 + (TG)n Simple_repeat Simple_repeat 2 49 0 463 279 30 24 chr9 119679518 119679683 -22591761 - MIR SINE MIR -58 204 39 801 193 0 28 chr9 119679997 119680142 -22591302 + FLAM_A SINE Alu 1 141 -1 180 290 29 29 chr9 119680142 119680211 -22591233 + MIR SINE MIR 57 125 -83 2316 80 11 0 chr9 119680231 119680517 -22590927 - AluSg SINE Alu -21 289 1 304 276 51 10 chr9 119681640 119681738 -22589706 + MIR SINE MIR 2 103 -159 208 230 69 103 chr9 119682024 119682111 -22589333 + MIR3 SINE MIR 113 196 -12 511 311 50 6 chr9 119682508 119682688 -22588756 + MIR3 SINE MIR 19 206 -2 324 282 34 72 chr9 119682783 119682980 -22588464 - MIR3 SINE MIR 0 262 2 485 277 36 0 chr9 119683314 119683426 -22588018 - L2 LINE L2 -2 3270 3155 282 348 54 9 chr9 119683792 119683904 -22587540 + L2 LINE L2 3139 3255 -17 224 341 22 0 chr9 119683992 119684083 -22587361 - MIR SINE MIR -68 140 48 1239 201 63 52 chr9 119684853 119685202 -22586242 + L1 LINE L1 3895 4247 -1899 249 241 19 0 chr9 119685260 119685314 -22586130 + MIR3 SINE MIR 135 189 -19 23 0 0 0 chr9 119685515 119685538 -22585906 + AT_rich Low_complexity Low_complexity 1 23 0 455 299 159 0 chr9 119685557 119685758 -22585686 + MIR SINE MIR 1 233 -29 5790 159 29 7 chr9 119685850 119687208 -22584236 + L1PA16 LINE L1 4775 6157 -9 399 41 0 0 chr9 119687210 119687259 -22584185 + (CA)n Simple_repeat Simple_repeat 1 49 0 2365 101 0 10 chr9 119687456 119687764 -22583680 + AluSx SINE Alu 1 305 -7 221 318 93 53 chr9 119687848 119687999 -22583445 + MIR SINE MIR 24 180 -82 415 330 64 15 chr9 119688014 119688217 -22583227 + MIR SINE MIR 4 216 -46 198 317 24 0 chr9 119688962 119689044 -22582400 + MIR SINE MIR 86 169 -93 222 203 47 62 chr9 119689640 119689704 -22581740 + L2 LINE L2 3210 3272 0 6939 193 142 18 chr9 119690418 119691888 -22579556 + MER52A LTR ERV1 1 1651 -104 1188 249 32 32 chr9 119691965 119692311 -22579133 + L1ME3A LINE L1 5825 6170 0 1120 161 0 0 chr9 119692360 119692534 -22578910 + MER2 DNA MER2_type 1 174 -171 2303 126 131 11 chr9 119692574 119692956 -22578488 - MSTA LTR MaLR 0 428 1 328 254 42 0 chr9 119693008 119693079 -22578365 + MER2 DNA MER2_type 271 344 -1 346 323 63 0 chr9 119693106 119693233 -22578211 - MIR3 SINE MIR -7 201 67 282 106 0 0 chr9 119695328 119695375 -22576069 + (CATA)n Simple_repeat Simple_repeat 2 48 0 272 328 92 15 chr9 119695408 119695539 -22575905 + MIR3 SINE MIR 6 146 -62 2179 97 4 0 chr9 119695720 119696022 -22575422 - AluSg SINE Alu 0 303 1 4607 163 21 8 chr9 119696208 119696841 -22574603 + L1MA10 LINE L1 5522 6170 -164 180 111 0 0 chr9 119696841 119696868 -22574576 + (CA)n Simple_repeat Simple_repeat 2 28 0 4607 163 21 8 chr9 119696868 119697032 -22574412 + L1MA10 LINE L1 6170 6330 -4 1910 110 59 10 chr9 119697697 119697987 -22573457 - AluSc SINE Alu -5 304 1 256 278 56 0 chr9 119698027 119698099 -22573345 + MIR SINE MIR 72 147 -61 426 273 29 7 chr9 119698753 119698874 -22572570 + MIR3 SINE MIR 67 193 -15 519 100 0 62 chr9 119698874 119698954 -22572490 - MADE1 DNA Mariner -2 78 4 426 273 29 7 chr9 119698954 119698971 -22572473 + MIR3 SINE MIR 193 208 0 378 246 85 17 chr9 119698970 119699088 -22572356 + MIR SINE MIR 77 202 -60 * 668 296 14 19 chr9 119699510 119699723 -22571721 - Charlie8 DNA MER1_type -2155 262 51 1971 164 0 3 chr9 119700438 119700749 -22570695 + AluJb SINE Alu 1 310 -2 234 323 53 43 chr9 119700837 119701041 -22570403 + MIR SINE MIR 1 207 -55 201 294 0 0 chr9 119701197 119701248 -22570196 + L2 LINE L2 2927 2977 -337 416 252 16 32 chr9 119701297 119701420 -22570024 - L2 LINE L2 -14 3299 3179 273 220 0 0 chr9 119701759 119701809 -22569635 - L2 LINE L2 -8 3305 3256 * 1669 342 134 19 chr9 119701808 119703044 -22568400 - L2 LINE L2 -591 2723 1192 1908 155 0 7 chr9 119703044 119703334 -22568110 + AluSx SINE Alu 1 288 -24 1669 342 134 19 chr9 119703334 119703988 -22567456 - L2 LINE L2 -2122 1192 615 330 314 110 0 chr9 119704494 119704612 -22566832 + L2 LINE L2 3142 3272 0 290 308 14 21 chr9 119705428 119705571 -22565873 + GA-rich Low_complexity Low_complexity 1 142 0 328 240 80 87 chr9 119706261 119706411 -22565033 + MIR3 SINE MIR 8 156 -52 186 143 0 0 chr9 119706792 119706827 -22564617 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr9 119707080 119707101 -22564343 + AT_rich Low_complexity Low_complexity 1 21 0 276 347 77 18 chr9 119707164 119707334 -22564110 - MIR SINE MIR -75 187 8 4716 234 84 74 chr9 119707992 119708068 -22563376 + L1MEc LINE L1 36 110 -6105 486 0 0 0 chr9 119708068 119708122 -22563322 + (CA)n Simple_repeat Simple_repeat 2 55 0 1868 114 0 0 chr9 119708122 119708384 -22563060 + AluY SINE Alu 46 307 -4 4716 234 84 74 chr9 119708384 119709694 -22561750 + L1MEc LINE L1 110 1406 -4809 297 0 0 0 chr9 119709694 119709727 -22561717 + (TC)n Simple_repeat Simple_repeat 2 34 0 4716 234 84 74 chr9 119709727 119710720 -22560724 + L1MEc LINE L1 1406 2388 -3827 2066 135 7 0 chr9 119710720 119711017 -22560427 + AluSq SINE Alu 1 299 -14 4716 234 84 74 chr9 119711017 119712562 -22558882 + L1MEc LINE L1 2388 4034 -2181 24552 51 0 1 chr9 119712562 119716285 -22555159 + L1PA5 LINE L1 2431 6154 0 4716 234 84 74 chr9 119716285 119716572 -22554872 + L1MEc LINE L1 4034 4317 -1898 208 241 35 17 chr9 119716617 119716675 -22554769 + MIR3 SINE MIR 135 193 -15 324 316 19 39 chr9 119716839 119716994 -22554450 + MIR SINE MIR 10 146 -62 225 0 0 0 chr9 119717178 119717203 -22554241 + (CA)n Simple_repeat Simple_repeat 2 26 0 317 320 115 0 chr9 119717739 119717861 -22553583 - L2 LINE L2 0 3313 3178 303 211 115 19 chr9 119717956 119718060 -22553384 + MIR SINE MIR 119 232 -30 373 304 38 32 chr9 119718964 119719122 -22552322 + MIR SINE MIR 46 204 -58 480 331 31 2 chr9 119719355 119719551 -22551893 - MIR3 SINE MIR -5 203 1 306 263 168 53 chr9 119719635 119719844 -22551600 + L2 LINE L2 2827 3059 -213 1622 155 10 31 chr9 119719937 119720227 -22551217 - AluJo SINE Alu -28 284 1 217 279 12 58 chr9 119720361 119720447 -22550997 + L2 LINE L2 3184 3265 -7 784 271 29 33 chr9 119721096 119721306 -22550138 - MIR SINE MIR -52 210 2 208 352 46 36 chr9 119721306 119721502 -22549942 + L2 LINE L2 2696 2893 -421 1009 251 9 5 chr9 119721526 119721749 -22549695 - MER58A DNA MER1_type 0 224 1 429 70 0 0 chr9 119721806 119721863 -22549581 + (CA)n Simple_repeat Simple_repeat 2 58 0 231 341 135 48 chr9 119721869 119722121 -22549323 + L2 LINE L2 2951 3224 -48 488 314 58 11 chr9 119722806 119723055 -22548389 - MIR SINE MIR 0 262 5 332 184 82 102 chr9 119723078 119723176 -22548268 - MER53 DNA DNA 0 189 94 513 0 0 0 chr9 119723545 119723602 -22547842 + (TG)n Simple_repeat Simple_repeat 2 58 0 315 366 30 0 chr9 119723951 119724085 -22547359 - MIR3 SINE MIR -7 201 64 215 236 18 0 chr9 119724289 119724344 -22547100 + (TG)n Simple_repeat Simple_repeat 1 56 0 245 375 23 0 chr9 119724574 119724702 -22546742 + MIR3 SINE MIR 42 172 -36 248 274 12 36 chr9 119725277 119725361 -22546083 + L2 LINE L2 3186 3267 -5 2172 100 7 17 chr9 119725546 119725845 -22545599 + AluSg SINE Alu 1 296 -14 1824 146 0 81 chr9 119726381 119726703 -22544741 - AluSx SINE Alu -16 296 1 28 79 0 0 chr9 119726770 119726833 -22544611 + AT_rich Low_complexity Low_complexity 1 63 0 741 282 59 14 chr9 119727922 119728142 -22543302 - MIR SINE MIR -21 241 12 588 205 79 114 chr9 119728180 119728434 -22543010 - MIR SINE MIR 0 262 18 260 150 183 0 chr9 119728558 119728618 -22542826 - MER116 DNA Mariner -9 71 1 247 257 62 88 chr9 119728659 119728772 -22542672 + MIR SINE MIR 23 132 -76 2160 171 37 0 chr9 119728919 119729294 -22542150 + L1MC1 LINE L1 5940 6328 -5 2526 69 0 0 chr9 119729510 119729814 -22541630 - AluY SINE Alu -7 304 1 518 353 16 24 chr9 119730444 119730699 -22540745 - MIR SINE MIR 0 262 10 5957 145 17 35 chr9 119731012 119732231 -22539213 + L1MA4 LINE L1 5050 6289 -11 2118 105 0 0 chr9 119732231 119732508 -22538936 + AluSc SINE Alu 1 277 -32 1024 120 0 11 chr9 119732509 119732684 -22538760 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 5957 145 17 35 chr9 119732684 119732741 -22538703 + L1MA4 LINE L1 6288 6300 0 548 143 155 0 chr9 119732744 119732828 -22538616 + FLAM_C SINE Alu 22 118 -25 581 340 95 40 chr9 119732944 119733365 -22538079 + L2 LINE L2 2826 3269 -3 547 281 115 21 chr9 119734400 119734635 -22536809 + MIR SINE MIR 4 260 -2 2858 10 0 0 chr9 119734706 119735014 -22536430 + AluY SINE Alu 1 308 -3 255 253 0 35 chr9 119735301 119735388 -22536056 + GA-rich Low_complexity Low_complexity 2 85 0 215 303 212 0 chr9 119735390 119735489 -22535955 - MIR SINE MIR -4 258 139 412 313 57 31 chr9 119735553 119735745 -22535699 - MIR SINE MIR -29 233 37 216 213 16 0 chr9 119735870 119735931 -22535513 + (TA)n Simple_repeat Simple_repeat 2 63 0 282 311 75 9 chr9 119736479 119736585 -22534859 + MIR SINE MIR 17 129 -133 2167 116 19 23 chr9 119736791 119737101 -22534343 + AluSx SINE Alu 2 310 -2 1210 177 40 134 chr9 119737194 119737567 -22533877 + MLT1A1 LTR MaLR 25 362 -3 368 195 55 62 chr9 119737592 119737720 -22533724 + L3 LINE CR1 1168 1294 -283 * 512 309 31 11 chr9 119737712 119737956 -22533488 - MIR SINE MIR -7 255 10 1829 169 0 3 chr9 119738054 119738344 -22533100 + AluJb SINE Alu 1 289 -23 1590 229 84 42 chr9 119738928 119739526 -22531918 + L1MC5 LINE L1 7294 7916 -45 332 316 64 47 chr9 119740110 119740281 -22531163 + MIR SINE MIR 50 223 -39 301 308 17 25 chr9 119740342 119740462 -22530982 - L2 LINE L2 -18 3295 3177 282 344 91 36 chr9 119740450 119740671 -22530773 + L3 LINE CR1 1342 1574 -3 * 22 0 0 0 chr9 119740694 119740716 -22530728 + AT_rich Low_complexity Low_complexity 1 22 0 805 324 81 41 chr9 119740871 119741417 -22530027 - L2 LINE L2 -261 3011 2447 787 265 22 20 chr9 119741711 119741968 -22529476 + MIR SINE MIR 6 262 0 219 274 96 0 chr9 119742460 119742533 -22528911 - MER5A DNA MER1_type -1 188 109 427 268 41 82 chr9 119742678 119742898 -22528546 + L2 LINE L2 3097 3307 -6 590 280 15 82 chr9 119743351 119743619 -22527825 + MIR SINE MIR 13 262 0 1056 239 9 5 chr9 119743705 119743923 -22527521 - MER58A DNA MER1_type 0 224 6 606 211 16 0 chr9 119743965 119744093 -22527351 + MIR SINE MIR 106 235 -27 387 319 44 0 chr9 119744309 119744422 -22527022 + L2 LINE L2 3132 3249 -23 291 286 18 27 chr9 119744426 119744538 -22526906 + (ATGGTG)n Simple_repeat Simple_repeat 5 115 0 * 303 260 0 30 chr9 119744455 119744555 -22526889 + (TGG)n Simple_repeat Simple_repeat 2 98 0 208 310 17 0 chr9 119744868 119744926 -22526518 - MIR SINE MIR -60 148 90 255 309 85 21 chr9 119744937 119745031 -22526413 + MIR SINE MIR 53 152 -56 348 338 46 20 chr9 119745270 119745421 -22526023 - MIR3 SINE MIR -22 186 32 277 232 4 27 chr9 119745499 119745587 -22525857 - MIR SINE MIR -116 92 8 217 372 106 0 chr9 119746433 119746546 -22524898 - MIR SINE MIR -92 170 46 185 32 0 65 chr9 119746643 119746674 -22524770 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 662 317 22 84 chr9 119747281 119747757 -22523687 + L2 LINE L2 2833 3270 -2 329 277 22 66 chr9 119748169 119748207 -22523237 + L2 LINE L2 2561 2599 -715 1509 145 25 72 chr9 119748207 119748391 -22523053 - AluJo SINE Alu -9 303 139 2301 121 0 0 chr9 119748391 119748697 -22522747 - AluSg SINE Alu -4 306 1 1509 145 25 72 chr9 119748697 119748830 -22522614 - AluJo SINE Alu -173 139 1 329 277 22 66 chr9 119748830 119748928 -22522516 + L2 LINE L2 2599 2691 -623 2246 120 0 0 chr9 119749149 119749450 -22521994 + AluSx SINE Alu 1 301 -11 291 258 56 34 chr9 119749675 119749688 -22521756 - L1MB8 LINE L1 -266 5912 5901 2386 80 7 3 chr9 119749688 119749987 -22521457 + AluSq SINE Alu 1 300 -13 291 258 56 34 chr9 119749987 119750151 -22521293 - L1MB8 LINE L1 -277 5901 5731 243 237 85 0 chr9 119750844 119750903 -22520541 + MIR SINE MIR 88 151 -111 402 156 13 13 chr9 119750903 119750980 -22520464 - MER116 DNA Mariner 0 80 4 799 247 87 40 chr9 119751043 119751316 -22520128 + MLT1J2 LTR MaLR 1 260 -186 2192 121 0 3 chr9 119751316 119751614 -22519830 - AluSx SINE Alu -15 297 1 799 247 87 40 chr9 119751614 119751670 -22519774 + MLT1J2 LTR MaLR 260 312 -134 189 0 0 0 chr9 119751670 119751691 -22519753 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 799 247 87 40 chr9 119751691 119751751 -22519693 + MLT1J2 LTR MaLR 312 431 -15 197 33 33 0 chr9 119751809 119751839 -22519605 + (ATG)n Simple_repeat Simple_repeat 3 33 0 1821 135 0 8 chr9 119752464 119752767 -22518677 + AluSx SINE Alu 26 326 0 304 224 79 0 chr9 119753857 119753933 -22517511 - MER91C DNA MER1_type -35 105 24 1163 182 57 5 chr9 119754556 119754765 -22516679 + MER58A DNA MER1_type 5 224 0 194 219 0 0 chr9 119754772 119754812 -22516632 - MIR SINE MIR -118 144 106 365 226 12 12 chr9 119754987 119755071 -22516373 - MIR3 SINE MIR -48 160 77 447 340 89 71 chr9 119755702 119756110 -22515334 + L2 LINE L2 2682 3097 -175 1566 174 3 51 chr9 119756110 119756271 -22515173 - AluJb SINE Alu -33 279 137 207 0 0 0 chr9 119756271 119756294 -22515150 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1566 174 3 51 chr9 119756294 119756425 -22515019 - AluJb SINE Alu -175 137 1 447 340 89 71 chr9 119756425 119756589 -22514855 + L2 LINE L2 3097 3257 -15 189 0 0 0 chr9 119757080 119757101 -22514343 + (A)n Simple_repeat Simple_repeat 1 21 0 301 191 292 0 chr9 119757662 119757751 -22513693 + MIR SINE MIR 148 262 0 1937 172 0 0 chr9 119757956 119758264 -22513180 + AluSx SINE Alu 1 308 -4 1269 126 17 0 chr9 119758286 119758460 -22512984 - AluSg/x SINE Alu -13 299 123 221 0 0 33 chr9 119758487 119758517 -22512927 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 225 0 0 0 chr9 119759131 119759156 -22512288 + (T)n Simple_repeat Simple_repeat 1 25 0 28 48 0 0 chr9 119759575 119759617 -22511827 + AT_rich Low_complexity Low_complexity 1 42 0 228 343 7 84 chr9 119759617 119759760 -22511684 + L2 LINE L2 3141 3272 0 308 226 39 69 chr9 119759888 119759990 -22511454 - MIR SINE MIR -92 116 18 352 321 92 38 chr9 119760117 119760301 -22511143 - L3 LINE CR1 -9 1568 1375 324 0 0 0 chr9 119760566 119760602 -22510842 + (CA)n Simple_repeat Simple_repeat 1 36 0 581 233 20 7 chr9 119760777 119760923 -22510521 + MIR SINE MIR 45 192 -70 314 219 16 0 chr9 119761190 119761254 -22510190 + MIR SINE MIR 88 152 -110 373 272 52 22 chr9 119761287 119761423 -22510021 - MIR SINE MIR -38 224 85 2026 54 0 0 chr9 119762184 119762423 -22509021 + L1PA5 LINE L1 5916 6154 0 353 340 68 7 chr9 119762436 119762583 -22508861 + MER91A DNA MER1_type 41 196 0 220 292 149 26 chr9 119762585 119762688 -22508756 + MIR SINE MIR 84 214 -48 2267 117 0 0 chr9 119762688 119762986 -22508458 + AluSq SINE Alu 1 298 -15 220 292 149 26 chr9 119762986 119763036 -22508408 + MIR SINE MIR 214 256 -6 186 103 0 0 chr9 119763037 119763066 -22508378 + (TTA)n Simple_repeat Simple_repeat 2 30 0 188 250 147 0 chr9 119764198 119764266 -22507178 - MIR SINE MIR -77 185 108 486 219 46 13 chr9 119764486 119764637 -22506807 + L1MC4 LINE L1 5749 5904 -1904 787 184 7 15 chr9 119764640 119764776 -22506668 - FLAM_C SINE Alu -7 136 2 275 71 24 0 chr9 119764813 119764855 -22506589 + (TA)n Simple_repeat Simple_repeat 1 43 0 1260 261 68 90 chr9 119764938 119765250 -22506194 + L1MC4 LINE L1 6074 6391 -1597 2457 160 62 12 chr9 119765250 119765656 -22505788 + MSTB LTR MaLR 1 426 0 1260 261 68 90 chr9 119765656 119766542 -22504902 + L1MC4 LINE L1 6391 7255 -733 1495 229 78 9 chr9 119766695 119767145 -22504299 + Charlie4a DNA MER1_type 27 507 -1 847 268 91 55 chr9 119767150 119767344 -22504100 + L1MC5 LINE L1 7370 7556 -405 2335 120 0 0 chr9 119767344 119767653 -22503791 - AluSx SINE Alu -3 309 1 847 268 91 55 chr9 119767653 119767984 -22503460 + L1MC5 LINE L1 7556 7914 -47 4093 146 16 35 chr9 119768134 119768593 -22502851 - L1MC1 LINE L1 0 6333 5892 2230 98 10 3 chr9 119768593 119768889 -22502555 - AluSx SINE Alu -14 298 1 4093 146 16 35 chr9 119768889 119769177 -22502267 - L1MC1 LINE L1 -441 5892 5600 640 189 8 24 chr9 119769277 119769400 -22502044 + MER66B LTR ERV1 2 122 -364 2192 161 50 11 chr9 119769400 119769779 -22501665 + MER66B LTR ERV1 1 394 -92 207 0 0 0 chr9 119769780 119769803 -22501641 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1353 145 259 15 chr9 119769805 119770201 -22501243 - L1MC1 LINE L1 -724 5609 5119 2330 98 3 0 chr9 119770207 119770502 -22500942 - AluSx SINE Alu -16 296 1 328 271 31 39 chr9 119770504 119770633 -22500811 + MLT1J2 LTR MaLR 308 435 -15 197 33 33 0 chr9 119770691 119770721 -22500723 + (ATG)n Simple_repeat Simple_repeat 3 33 0 332 119 15 45 chr9 119770804 119770871 -22500573 - AluSp SINE Alu -119 184 120 22 0 0 0 chr9 119771704 119771726 -22499718 + AT_rich Low_complexity Low_complexity 1 22 0 190 289 22 0 chr9 119771731 119771776 -22499668 - L2 LINE L2 -14 3299 3254 1646 254 121 21 chr9 119771923 119772451 -22498993 + MLT1E LTR MaLR 13 593 0 22 35 0 0 chr9 119772456 119772485 -22498959 + AT_rich Low_complexity Low_complexity 1 29 0 1904 150 28 0 chr9 119772490 119772777 -22498667 + AluJb SINE Alu 2 296 -16 204 125 0 0 chr9 119772920 119772952 -22498492 + (TAA)n Simple_repeat Simple_repeat 2 33 0 551 274 59 11 chr9 119772958 119773144 -22498300 - MIR SINE MIR -2 260 66 283 250 59 37 chr9 119773293 119773363 -22498081 - MIR SINE MIR 0 262 195 2469 95 86 6 chr9 119773363 119773712 -22497732 + MER51B LTR ERV1 1 377 0 283 250 59 37 chr9 119773712 119773777 -22497667 - MIR SINE MIR -67 195 124 1781 231 83 9 chr9 119773833 119774265 -22497179 + MLT1C LTR MaLR 1 464 -3 3172 53 5 0 chr9 119774265 119774643 -22496801 + LTR8 LTR ERV1 2 381 -310 2058 211 68 14 chr9 119774645 119775128 -22496316 - LTR22 LTR ERVK 0 509 1 * 2381 72 9 30 chr9 119775128 119775438 -22496006 + LTR8 LTR ERV1 389 691 0 47505 70 14 23 chr9 119775438 119779982 -22491462 + HUERS-P1 LTR ERV1 1 4475 -1788 23769 31 0 0 chr9 119779982 119783434 -22488010 + L1PA3 LINE L1 2696 6152 -3 47505 70 14 23 chr9 119783434 119785207 -22486237 + HUERS-P1 LTR ERV1 4475 6262 -1 5635 78 7 3 chr9 119785208 119785896 -22485548 + LTR8 LTR ERV1 1 691 0 203 224 20 0 chr9 119786259 119786308 -22485136 + (TA)n Simple_repeat Simple_repeat 1 50 0 315 266 165 32 chr9 119786567 119786785 -22484659 + MIR SINE MIR 16 262 0 296 246 87 36 chr9 119787421 119787559 -22483885 + MIR3 SINE MIR 31 175 -33 925 205 21 86 chr9 119789334 119789568 -22481876 + MER20 DNA MER1_type 1 219 0 202 282 0 0 chr9 119789570 119789609 -22481835 + MIR SINE MIR 33 71 -191 754 259 52 10 chr9 119789610 119789803 -22481641 + MIR SINE MIR 44 244 -18 425 269 78 29 chr9 119789823 119790019 -22481425 - MIR3 SINE MIR -62 200 1 349 253 285 1 chr9 119790614 119790793 -22480651 - MIR SINE MIR -3 259 34 486 269 136 19 chr9 119791073 119791279 -22480165 + MIR SINE MIR 31 261 -1 1264 184 0 0 chr9 119791325 119791531 -22479913 - AluJb SINE Alu -20 292 87 371 274 0 21 chr9 119792391 119792486 -22478958 + L2 LINE L2 3168 3260 -12 621 261 54 50 chr9 119792801 119793062 -22478382 - MIR SINE MIR 0 262 1 411 227 0 0 chr9 119793176 119793251 -22478193 - AluJb SINE Alu -39 273 199 232 355 50 16 chr9 119793626 119793747 -22477697 - MIR SINE MIR -118 144 20 2457 60 3 35 chr9 119794851 119795168 -22476276 - AluY SINE Alu -4 307 1 634 256 58 17 chr9 119795571 119795743 -22475701 + MIR SINE MIR 63 241 -21 252 320 67 27 chr9 119796684 119796834 -22474610 - MIR SINE MIR -6 256 101 185 310 177 53 chr9 119797364 119797477 -22473967 + L2 LINE L2 2924 3050 -222 509 299 15 46 chr9 119797647 119797844 -22473600 - MIR SINE MIR -7 255 65 202 227 182 34 chr9 119797873 119797961 -22473483 + L2 LINE L2 3213 3313 0 312 277 252 0 chr9 119802522 119802681 -22468763 + MIR SINE MIR 64 262 0 189 158 105 0 chr9 119803206 119803244 -22468200 - L2 LINE L2 -4 3309 3268 3332 15 0 0 chr9 119803403 119803825 -22467619 - L1P1 LINE L1 -528 5627 5206 2939 19 0 0 chr9 119803825 119804137 -22467307 + L1PA2 LINE L1 5837 6155 0 602 258 58 37 chr9 119804447 119804637 -22466807 + MIR3 SINE MIR 1 194 -14 258 247 53 107 chr9 119804783 119804933 -22466511 + MIR SINE MIR 65 206 -56 21 57 0 0 chr9 119805426 119805461 -22465983 + AT_rich Low_complexity Low_complexity 1 35 0 330 271 76 8 chr9 119805484 119805602 -22465842 + MIR SINE MIR 13 138 -124 1257 228 111 5 chr9 119806694 119807063 -22464381 + LTR52 LTR ERVL 11 418 -3 6569 220 93 51 chr9 119807070 119809056 -22462388 + LTR52-int LTR ERVL 8 2075 -1481 5160 206 62 25 chr9 119809153 119810373 -22461071 + LTR52-int LTR ERVL 2251 3556 0 1783 190 34 36 chr9 119810374 119810789 -22460655 + LTR52 LTR ERVL 2 415 -6 2275 93 3 13 chr9 119810845 119811158 -22460286 + AluSp SINE Alu 1 310 -3 475 341 106 61 chr9 119811840 119812895 -22458549 + L2 LINE L2 2178 3267 -5 234 128 0 0 chr9 119813199 119813238 -22458206 + L1MB8 LINE L1 6135 6173 -5 291 222 0 28 chr9 119813348 119813420 -22458024 + MIR SINE MIR 28 97 -165 272 314 112 30 chr9 119814106 119814275 -22457169 + MIR SINE MIR 68 250 -12 448 250 214 15 chr9 119814281 119814477 -22456967 + MIR SINE MIR 28 262 0 499 301 26 10 chr9 119814856 119815049 -22456395 - MIR SINE MIR -1 261 66 2924 3 0 3 chr9 119815195 119815507 -22455937 + AluYa5 SINE Alu 1 311 0 344 286 51 31 chr9 119815787 119815983 -22455461 + L2 LINE L2 2889 3088 -184 404 291 60 8 chr9 119816928 119817062 -22454382 - MER117 DNA MER1_type -1 196 56 522 255 36 47 chr9 119817387 119817579 -22453865 + MIR SINE MIR 23 212 -50 437 315 67 73 chr9 119818325 119818872 -22452572 - L2 LINE L2 0 3272 2693 1735 222 52 48 chr9 119818873 119819350 -22452094 + MLT2B1 LTR ERVL 1 479 -41 203 184 0 0 chr9 119819351 119819389 -22452055 + (TA)n Simple_repeat Simple_repeat 2 39 0 305 132 0 88 chr9 119819395 119819463 -22451981 + MLT2C2 LTR ERVL 403 464 0 431 320 31 0 chr9 119819472 119819666 -22451778 - L2 LINE L2 -627 2687 2488 458 311 103 9 chr9 119820003 119820324 -22451120 - L2 LINE L2 -1045 2269 1919 308 248 8 0 chr9 119820913 119821030 -22450414 + CT-rich Low_complexity Low_complexity 1 118 0 204 286 0 0 chr9 119821383 119821432 -22450012 + (CA)n Simple_repeat Simple_repeat 1 49 0 360 306 25 16 chr9 119821573 119821694 -22449750 - MIR SINE MIR -120 142 21 243 208 0 38 chr9 119822391 119822444 -22449000 - MER117 DNA MER1_type -124 73 23 2325 96 0 0 chr9 119823281 119823574 -22447870 + AluY SINE Alu 1 293 -18 304 289 58 8 chr9 119823664 119823785 -22447659 - MIR SINE MIR -24 238 112 252 304 76 54 chr9 119824905 119825089 -22446355 + MIR3 SINE MIR 17 204 -4 486 261 12 24 chr9 119825244 119825409 -22446035 + MIR SINE MIR 2 164 -98 423 286 41 20 chr9 119825943 119826090 -22445354 - MIR3 SINE MIR -11 197 48 202 222 67 0 chr9 119827115 119827160 -22444284 + L2 LINE L2 3205 3252 -20 378 0 0 0 chr9 119827411 119827453 -22443991 + (CA)n Simple_repeat Simple_repeat 2 43 0 580 186 77 55 chr9 119828108 119828291 -22443153 + MIR SINE MIR 33 219 -43 191 231 0 0 chr9 119828793 119828845 -22442599 - L2 LINE L2 -310 2962 2911 188 316 73 28 chr9 119829091 119829338 -22442106 + L2 LINE L2 2994 3251 -21 212 274 21 32 chr9 119829791 119829886 -22441558 + MIR SINE MIR 102 195 -67 538 230 103 0 chr9 119829953 119830079 -22441365 + MER58B DNA MER1_type 202 340 -1 275 254 59 25 chr9 119830351 119830469 -22440975 + L1ME4a LINE L1 5964 6085 -36 288 252 45 36 chr9 119831304 119831415 -22440029 + L2 LINE L2 3183 3294 -19 432 0 0 0 chr9 119831576 119831624 -22439820 + (TAA)n Simple_repeat Simple_repeat 1 48 0 240 259 85 19 chr9 119831726 119831796 -22439648 - MIR SINE MIR -44 218 154 2217 107 0 10 chr9 119831796 119832121 -22439323 - AluSq SINE Alu 0 313 1 240 259 85 19 chr9 119832121 119832198 -22439246 - MIR SINE MIR -108 154 68 592 271 39 7 chr9 119832252 119832407 -22439037 + L3 LINE CR1 1416 1575 -2 200 371 10 10 chr9 119832531 119832628 -22438816 + MIR SINE MIR 5 101 -161 342 276 92 15 chr9 119833167 119833322 -22438122 + MIR3 SINE MIR 3 169 -65 385 308 83 13 chr9 119834088 119834244 -22437200 + MIR SINE MIR 26 192 -70 502 231 83 47 chr9 119834445 119834614 -22436830 - MIR3 SINE MIR -19 189 15 425 273 128 73 chr9 119834644 119834933 -22436511 + L3 LINE CR1 1261 1565 -12 232 180 20 20 chr9 119834964 119835014 -22436430 + GA-rich Low_complexity Low_complexity 2 51 0 258 262 0 0 chr9 119835280 119835341 -22436103 + (CAT)n Simple_repeat Simple_repeat 1 61 0 372 296 210 0 chr9 119835347 119835523 -22435921 - MIR SINE MIR -13 249 37 238 270 87 71 chr9 119835890 119836016 -22435428 - L2 LINE L2 -6 3266 3139 241 333 91 0 chr9 119836196 119836295 -22435149 + MIR SINE MIR 48 155 -107 503 278 167 0 chr9 119836325 119836523 -22434921 - MIR SINE MIR 0 262 32 360 43 0 0 chr9 119837848 119837894 -22433550 + (TG)n Simple_repeat Simple_repeat 2 47 0 342 0 0 0 chr9 119838008 119838046 -22433398 + (TG)n Simple_repeat Simple_repeat 2 39 0 1421 126 18 98 chr9 119838164 119838308 -22433136 + L1PB2 LINE L1 5887 6041 -110 2810 3 0 0 chr9 119838308 119838603 -22432841 + AluY SINE Alu 1 295 -16 1421 126 18 98 chr9 119838603 119838616 -22432828 + L1PB2 LINE L1 6041 6053 -98 1905 117 99 0 chr9 119838616 119838889 -22432555 + AluSx SINE Alu 1 300 -12 1421 126 18 98 chr9 119838889 119839016 -22432428 + L1PB2 LINE L1 6053 6149 -2 538 196 20 68 chr9 119839037 119839185 -22432259 - MIR SINE MIR -72 190 50 246 32 0 0 chr9 119839409 119839440 -22432004 + (CA)n Simple_repeat Simple_repeat 2 32 0 344 278 19 9 chr9 119839562 119839670 -22431774 - L2 LINE L2 -2 3311 3203 286 330 31 0 chr9 119840073 119840170 -22431274 + L2 LINE L2 3127 3226 -46 275 231 0 26 chr9 119840783 119840861 -22430583 + MIR SINE MIR 77 152 -110 2404 78 0 7 chr9 119840903 119841210 -22430234 - AluY SINE Alu -5 306 2 283 244 35 23 chr9 119841964 119842050 -22429394 + MIR SINE MIR 38 124 -84 315 113 0 0 chr9 119842308 119842361 -22429083 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 194 375 91 0 chr9 119842380 119842468 -22428976 - L2 LINE L2 -52 3220 3125 289 67 0 22 chr9 119843142 119843187 -22428257 + L1MA5 LINE L1 6257 6300 0 1870 93 4 27 chr9 119843666 119843925 -22427519 + AluY SINE Alu 1 253 -58 1817 125 37 0 chr9 119843925 119844197 -22427247 - AluSx SINE Alu -29 283 2 226 262 64 52 chr9 119844382 119844554 -22426890 - L2 LINE L2 -174 3098 2925 561 321 51 26 chr9 119844608 119844919 -22426525 - L2 LINE L2 -400 2914 2596 289 359 8 0 chr9 119846070 119846187 -22425257 + L2 LINE L2 2587 2704 -610 1542 196 50 72 chr9 119846218 119846479 -22424965 - MLT1D LTR MaLR 0 505 259 2283 113 0 3 chr9 119846479 119846781 -22424663 - AluSg SINE Alu -9 301 1 1542 196 50 72 chr9 119846781 119847035 -22424409 - MLT1D LTR MaLR -246 259 1 543 253 23 99 chr9 119847111 119847332 -22424112 + L2 LINE L2 3065 3268 -4 483 281 27 7 chr9 119847507 119847653 -22423791 - MIR SINE MIR -6 256 108 335 281 123 7 chr9 119847825 119847971 -22423473 - MIR SINE MIR -14 248 86 333 0 0 0 chr9 119848089 119848126 -22423318 + (CA)n Simple_repeat Simple_repeat 1 37 0 386 230 23 0 chr9 119849154 119849241 -22422203 + MIR SINE MIR 30 118 -90 580 304 17 22 chr9 119849389 119849619 -22421825 + MIR SINE MIR 31 259 -3 2452 153 36 5 chr9 119850030 119850443 -22421001 + MSTB LTR MaLR 1 426 0 230 81 27 0 chr9 119850939 119850976 -22420468 + (TC)n Simple_repeat Simple_repeat 2 39 0 392 314 7 14 chr9 119851488 119851628 -22419816 + MIR SINE MIR 68 206 -56 312 267 99 50 chr9 119851770 119851931 -22419513 + MIR SINE MIR 84 252 -10 240 35 0 0 chr9 119851934 119851963 -22419481 + (TTA)n Simple_repeat Simple_repeat 1 29 0 5370 192 39 28 chr9 119851999 119854085 -22417359 + L1MC2 LINE L1 4233 6336 -8 5383 66 1 30 chr9 119854185 119854911 -22416533 - L1PA7 LINE L1 0 6154 5450 885 229 17 0 chr9 119854914 119855093 -22416351 + MER58A DNA MER1_type 43 224 0 21 0 0 0 chr9 119855148 119855169 -22416275 + AT_rich Low_complexity Low_complexity 1 21 0 1320 220 96 94 chr9 119855561 119855630 -22415814 + MLT1D LTR MaLR 3 70 -435 2005 151 2 90 chr9 119855630 119856054 -22415390 + MLT1B LTR MaLR 1 387 -3 1320 220 96 94 chr9 119856054 119856483 -22414961 + MLT1D LTR MaLR 70 502 -3 287 250 39 19 chr9 119856701 119856805 -22414639 + MIR SINE MIR 86 191 -71 339 25 0 0 chr9 119857166 119857206 -22414238 + (CA)n Simple_repeat Simple_repeat 2 41 0 272 255 0 85 chr9 119857221 119857315 -22414129 - MIR3 SINE MIR -54 154 69 231 222 0 0 chr9 119858122 119858176 -22413268 + L2 LINE L2 3199 3252 -20 207 0 0 0 chr9 119858366 119858389 -22413055 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 202 250 0 54 chr9 119858411 119858467 -22412977 - MIR3 SINE MIR -16 192 140 * 513 213 60 27 chr9 119858459 119858609 -22412835 + MIR SINE MIR 108 262 0 463 229 236 13 chr9 119858939 119859096 -22412348 + MER91A DNA MER1_type 5 196 0 303 283 66 28 chr9 119859166 119859272 -22412172 + L2 LINE L2 3202 3311 -2 1379 200 59 10 chr9 119859285 119859575 -22411869 - AluJo SINE Alu -8 304 1 694 289 75 34 chr9 119859952 119860301 -22411143 + L2 LINE L2 2949 3311 -2 217 328 26 35 chr9 119861577 119861693 -22409751 - L2 LINE L2 0 3272 3158 541 297 35 71 chr9 119861811 119862294 -22409150 - L2 LINE L2 -180 3092 2618 339 225 45 0 chr9 119862653 119862742 -22408702 + MIR SINE MIR 59 151 -111 412 292 36 30 chr9 119862860 119862900 -22408544 - MIR SINE MIR -13 249 211 1152 202 19 95 chr9 119862900 119863267 -22408177 + MER58B DNA MER1_type 2 340 -1 412 292 36 30 chr9 119863267 119863394 -22408050 - MIR SINE MIR -51 211 81 324 351 27 9 chr9 119863524 119863635 -22407809 + L2 LINE L2 3138 3250 -22 372 278 92 29 chr9 119863982 119864155 -22407289 + MIR3 SINE MIR 15 155 -53 355 345 82 6 chr9 119864370 119864541 -22406903 - MIR SINE MIR -14 248 65 964 317 82 2 chr9 119864546 119864947 -22406497 + LTR16A LTR ERVL 16 448 -2 23 0 0 0 chr9 119865251 119865274 -22406170 + AT_rich Low_complexity Low_complexity 1 23 0 875 310 79 14 chr9 119865809 119866251 -22405193 + L1ME4a LINE L1 5541 6011 -110 283 290 145 0 chr9 119866353 119866498 -22404946 + MIR SINE MIR 80 245 -17 430 245 6 10 chr9 119866630 119866943 -22404501 + (CA)n Simple_repeat Simple_repeat 1 311 0 543 289 0 6 chr9 119867037 119867210 -22404234 + (CA)n Simple_repeat Simple_repeat 1 172 0 290 251 0 6 chr9 119867257 119867432 -22404012 + (CA)n Simple_repeat Simple_repeat 1 174 0 236 255 21 21 chr9 119867434 119867528 -22403916 + (CATA)n Simple_repeat Simple_repeat 1 94 0 183 80 0 0 chr9 119867543 119867568 -22403876 + (CA)n Simple_repeat Simple_repeat 2 26 0 260 273 24 79 chr9 119868351 119868516 -22402928 - L2 LINE L2 -9 3304 3149 469 300 116 48 chr9 119868534 119868935 -22402509 + L2 LINE L2 1752 2189 -1125 1892 190 64 3 chr9 119868935 119869277 -22402167 + MLT1A1 LTR MaLR 1 363 -2 469 300 116 48 chr9 119869277 119869332 -22402112 + L2 LINE L2 2189 2239 -1075 390 312 224 30 chr9 119869337 119870072 -22401372 - L2 LINE L2 -960 2354 1477 1313 205 91 15 chr9 119870159 119870422 -22401022 + AluJo SINE Alu 2 284 -18 200 358 185 0 chr9 119870772 119870923 -22400521 - MIR SINE MIR 0 262 84 217 366 23 8 chr9 119870955 119871086 -22400358 - L3 LINE CR1 -291 1286 1154 316 348 72 14 chr9 119871432 119871570 -22399874 + L2 LINE L2 2932 3077 -195 382 284 129 60 chr9 119871608 119871809 -22399635 + MIR SINE MIR 4 218 -44 295 373 39 0 chr9 119871867 119871969 -22399475 + L2 LINE L2 3141 3246 -26 234 0 0 0 chr9 119871969 119871995 -22399449 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 21 36 0 0 chr9 119872427 119872455 -22398989 + AT_rich Low_complexity Low_complexity 1 28 0 2945 88 0 3 chr9 119872557 119872921 -22398523 + THE1B LTR MaLR 1 363 -1 520 278 29 23 chr9 119874041 119874214 -22397230 - MIR SINE MIR -58 204 31 272 295 105 9 chr9 119874622 119874727 -22396717 - MIR SINE MIR -63 145 31 509 266 157 13 chr9 119874845 119875074 -22396370 - MIR SINE MIR 0 262 1 227 256 26 0 chr9 119875788 119875866 -22395578 + GA-rich Low_complexity Low_complexity 3 82 0 595 145 47 17 chr9 119875877 119876049 -22395395 + GA-rich Low_complexity Low_complexity 2 178 0 884 121 23 12 chr9 119876067 119876240 -22395204 + GA-rich Low_complexity Low_complexity 4 178 0 363 320 31 16 chr9 119876369 119876497 -22394947 + MER91A DNA MER1_type 1 130 -66 362 275 54 48 chr9 119876737 119876904 -22394540 - MIR SINE MIR -75 187 20 366 403 19 45 chr9 119877168 119877543 -22393901 + L3 LINE CR1 207 571 -1006 293 310 70 21 chr9 119877768 119877900 -22393544 - MIR3 SINE MIR -59 149 8 752 181 14 139 chr9 119877900 119878115 -22393329 - MER5A DNA MER1_type 0 189 2 1941 113 25 14 chr9 119878233 119878516 -22392928 - AluSg SINE Alu 0 310 25 257 231 19 0 chr9 119878523 119878575 -22392869 - MER5A DNA MER1_type -108 81 29 24 32 0 0 chr9 119878787 119878818 -22392626 + AT_rich Low_complexity Low_complexity 1 31 0 1067 186 51 140 chr9 119879530 119879923 -22391521 + MLT1A1 LTR MaLR 1 358 -7 247 317 42 6 chr9 119880279 119880446 -22390998 + (TTCA)n Simple_repeat Simple_repeat 2 174 0 264 317 102 43 chr9 119880446 119880632 -22390812 - L2 LINE L2 0 3272 3076 196 375 0 0 chr9 119880762 119880826 -22390618 - MIR SINE MIR -196 66 3 247 319 72 30 chr9 119880838 119881004 -22390440 - L2 LINE L2 -1413 1901 1729 222 37 0 0 chr9 119881204 119881231 -22390213 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2386 75 14 0 chr9 119881236 119881531 -22389913 - AluSp SINE Alu -14 299 1 393 315 4 14 chr9 119882303 119882434 -22389010 - MIR SINE MIR -77 131 3 280 227 117 78 chr9 119883368 119883496 -22387948 + MER94 DNA DNA 1 133 -1 525 165 0 0 chr9 119883660 119883757 -22387687 + CT-rich Low_complexity Low_complexity 2 98 0 513 253 83 39 chr9 119883880 119884114 -22387330 - MIR SINE MIR -3 259 8 25 51 0 0 chr9 119884371 119884410 -22387034 + AT_rich Low_complexity Low_complexity 1 39 0 276 309 112 22 chr9 119884452 119884605 -22386839 - MIR SINE MIR -67 141 6 251 403 14 0 chr9 119884673 119884812 -22386632 + MIR SINE MIR 109 249 -13 2272 99 3 0 chr9 119885053 119885346 -22386098 + AluSp SINE Alu 11 304 -9 468 273 36 57 chr9 119885371 119885565 -22385879 + MIR SINE MIR 22 211 -51 1233 244 99 118 chr9 119885566 119886863 -22384581 + L2 LINE L2 2038 3312 -1 213 279 0 16 chr9 119886904 119886965 -22384479 + (CTA)n Simple_repeat Simple_repeat 3 62 0 2021 128 40 100 chr9 119887135 119887534 -22383910 + THE1C LTR MaLR 1 375 0 1630 145 19 32 chr9 119887544 119887597 -22383847 + L1MC3 LINE L1 7479 7531 -254 2207 149 45 131 chr9 119887597 119888155 -22383289 + MER67D LTR ERV1 1 510 -4 1630 145 19 32 chr9 119888155 119888411 -22383033 + L1MC3 LINE L1 7531 7784 -1 2388 113 48 66 chr9 119888418 119888860 -22382584 + L1MA7 LINE L1 5852 6285 -6 293 276 53 0 chr9 119888936 119889012 -22382432 + MIR SINE MIR 65 144 -64 449 225 0 0 chr9 119889053 119889142 -22382302 + MER106B DNA MER1_type 61 149 -910 183 309 0 29 chr9 119889420 119889488 -22381956 - L3 LINE CR1 -92 1485 1420 2366 106 0 0 chr9 119890310 119890621 -22380823 - AluSx SINE Alu -1 311 1 378 274 26 9 chr9 119890652 119890765 -22380679 - MIR SINE MIR -79 183 69 271 254 188 14 chr9 119890870 119891008 -22380436 + L2 LINE L2 2917 3078 -194 191 306 25 124 chr9 119891023 119891073 -22380371 + L2 LINE L2 3203 3256 -57 2202 94 3 33 chr9 119891073 119891294 -22380150 - AluSx SINE Alu -14 298 87 1208 29 12 23 chr9 119891294 119891465 -22379979 + (GAAA)n Simple_repeat Simple_repeat 1 169 0 2202 94 3 33 chr9 119891465 119891550 -22379894 - AluSx SINE Alu -225 87 1 191 306 25 124 chr9 119891550 119891620 -22379824 + L2 LINE L2 3256 3311 -2 187 286 127 16 chr9 119891610 119891673 -22379771 - MIR SINE MIR -119 89 20 * 23 0 0 0 chr9 119892562 119892585 -22378859 + AT_rich Low_complexity Low_complexity 1 23 0 1331 123 38 0 chr9 119893297 119893508 -22377936 + L1PA16 LINE L1 5945 6163 -3 535 299 45 6 chr9 119893533 119893752 -22377692 + L1P4 LINE L1 5588 5826 -348 324 127 0 18 chr9 119893752 119893807 -22377637 - L2 LINE L2 -65 3248 3195 343 195 97 44 chr9 119893807 119893920 -22377524 + L1MC4a LINE L1 5783 5901 -1907 1267 188 60 5 chr9 119894356 119894458 -22376986 + MER30 DNA MER1_type 1 96 -134 225 0 0 0 chr9 119894458 119894483 -22376961 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2422 76 3 3 chr9 119894492 119894793 -22376651 - AluSp SINE Alu -12 301 1 1267 188 60 5 chr9 119894793 119894898 -22376546 + MER30 DNA MER1_type 103 230 0 337 304 61 17 chr9 119894938 119895053 -22376391 + MIR SINE MIR 21 140 -68 2254 94 6 28 chr9 119895354 119895673 -22375771 - AluSq SINE Alu -1 312 1 371 323 99 21 chr9 119896176 119896368 -22375076 - MIR SINE MIR -15 247 41 358 266 126 35 chr9 119896531 119896674 -22374770 - MIR SINE MIR -72 190 35 196 238 88 0 chr9 119896915 119896995 -22374449 - MIR SINE MIR -112 150 64 867 205 0 56 chr9 119897003 119897198 -22374246 + L1MA9 LINE L1 5945 6128 -184 1406 198 0 32 chr9 119897209 119897487 -22373957 - AluJo SINE Alu -14 298 30 805 218 0 45 chr9 119897487 119897689 -22373755 + L1MA10 LINE L1 6142 6334 0 251 113 32 97 chr9 119897788 119897850 -22373594 - PABL_B LTR ERV1 -71 596 539 202 308 26 26 chr9 119898122 119898200 -22373244 + MIR SINE MIR 21 98 -110 324 298 14 86 chr9 119898292 119898383 -22373061 + MIR SINE MIR 61 139 -69 1771 176 3 3 chr9 119898383 119898685 -22372759 + AluSx SINE Alu 1 302 -10 324 298 14 86 chr9 119898685 119898744 -22372700 + MIR SINE MIR 139 201 -7 270 248 37 40 chr9 119898822 119898944 -22372500 + MIR SINE MIR 6 129 -79 336 324 139 29 chr9 119899059 119899340 -22372104 + MLT1I LTR MaLR 98 409 0 362 335 42 18 chr9 119901086 119901253 -22370191 + MIR3 SINE MIR 21 191 -17 2207 102 10 26 chr9 119901695 119902047 -22369397 + AluSg SINE Alu 1 347 0 2269 107 7 0 chr9 119902471 119902779 -22368665 - AluY SINE Alu 0 311 2 1500 178 16 66 chr9 119903701 119903876 -22367568 - AluJo SINE Alu -8 304 122 396 0 0 0 chr9 119903876 119903920 -22367524 + (TA)n Simple_repeat Simple_repeat 2 45 0 2392 93 0 0 chr9 119903920 119904220 -22367224 - AluY SINE Alu -11 300 1 1500 178 16 66 chr9 119904220 119904363 -22367081 - AluJo SINE Alu -188 124 1 454 216 90 37 chr9 119904624 119904758 -22366686 + MIR SINE MIR 20 160 -102 486 272 99 26 chr9 119904792 119904983 -22366461 + MIR SINE MIR 58 262 0 258 81 0 0 chr9 119905225 119905262 -22366182 + (TG)n Simple_repeat Simple_repeat 2 38 0 306 0 0 0 chr9 119905506 119905540 -22365904 + (TG)n Simple_repeat Simple_repeat 2 35 0 212 297 11 77 chr9 119906915 119907006 -22364438 - L2 LINE L2 -6 3266 3182 * 361 329 29 18 chr9 119907005 119907175 -22364269 + MIR SINE MIR 20 191 -71 227 302 201 6 chr9 119907255 119907424 -22364020 - MIR SINE MIR -13 249 48 1890 144 0 14 chr9 119908225 119908539 -22362905 + AluSg SINE Alu 1 310 0 321 47 0 0 chr9 119908673 119908716 -22362728 + (TG)n Simple_repeat Simple_repeat 2 44 0 945 289 120 48 chr9 119908820 119910070 -22361374 - L1MC4a LINE L1 -302 5819 4563 30 45 0 0 chr9 119910074 119910118 -22361326 + AT_rich Low_complexity Low_complexity 1 44 0 404 284 14 40 chr9 119910229 119910377 -22361067 + MLT1J2 LTR MaLR 62 205 -245 553 233 26 0 chr9 119910740 119910856 -22360588 + MIR SINE MIR 32 150 -112 662 353 114 16 chr9 119911070 119911682 -22359762 - L1MC4a LINE L1 -2466 3680 3009 423 352 82 17 chr9 119911927 119912160 -22359284 + MIR SINE MIR 14 261 -1 1975 211 104 0 chr9 119912581 119913031 -22358413 + MLT1D LTR MaLR 1 497 -8 374 287 57 16 chr9 119913052 119913174 -22358270 - MIR SINE MIR -111 151 25 21 0 0 0 chr9 119913411 119913432 -22358012 + AT_rich Low_complexity Low_complexity 1 21 0 359 325 47 18 chr9 119913736 119913916 -22357528 - MIR SINE MIR -71 191 9 2214 123 0 3 chr9 119914148 119914450 -22356994 + AluSx SINE Alu 1 301 -11 260 283 65 0 chr9 119914847 119914873 -22356571 + MER103 DNA DNA 22 45 -121 580 229 0 73 chr9 119914873 119915065 -22356379 - MER104 DNA MER2_type -1 179 2 260 283 65 0 chr9 119915065 119915130 -22356314 + MER103 DNA DNA 45 119 -47 201 217 185 33 chr9 119915792 119915884 -22355560 + MIR SINE MIR 39 144 -64 2545 66 0 0 chr9 119915919 119916224 -22355220 + AluY SINE Alu 1 305 -6 198 382 62 0 chr9 119916974 119917118 -22354326 - L2 LINE L2 -35 3237 3085 225 0 0 0 chr9 119917292 119917317 -22354127 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2234 120 0 0 chr9 119917408 119917716 -22353728 + AluY SINE Alu 1 308 -3 198 281 53 140 chr9 119917757 119917928 -22353516 - L2 LINE L2 -198 3074 2919 400 256 22 0 chr9 119918020 119918110 -22353334 - L2 LINE L2 -5 3308 3217 415 256 160 23 chr9 119918154 119918354 -22353090 - MIR SINE MIR 0 262 38 * 782 271 29 42 chr9 119918351 119918591 -22352853 + MIR SINE MIR 26 262 0 721 226 20 64 chr9 119919079 119919283 -22352161 - MIR SINE MIR -5 257 63 212 186 0 23 chr9 119919280 119919323 -22352121 + MIR SINE MIR 69 110 -152 * 261 291 55 27 chr9 119919392 119919502 -22351942 - MIR SINE MIR -66 142 30 355 304 35 0 chr9 119920277 119920392 -22351052 - MIR3 SINE MIR -17 191 73 210 328 197 5 chr9 119920438 119920636 -22350808 - MIR SINE MIR -18 244 9 469 296 20 25 chr9 119921285 119921487 -22349957 + MIR SINE MIR 52 256 -6 438 332 40 5 chr9 119921615 119921817 -22349627 + MIR SINE MIR 49 257 -5 344 259 12 0 chr9 119923065 119923146 -22348298 - MIR SINE MIR -22 240 159 1138 216 145 75 chr9 119923147 119923601 -22347843 + MLT1D LTR MaLR 2 487 -18 191 258 280 0 chr9 119923604 119923697 -22347747 - MIR SINE MIR -98 164 46 * 222 280 37 56 chr9 119923644 119923751 -22347693 + MIR3 SINE MIR 12 116 -92 244 281 170 33 chr9 119923862 119924015 -22347429 - MIR3 SINE MIR -14 194 21 349 245 69 11 chr9 119924058 119924178 -22347266 - MIR3 SINE MIR -38 170 46 229 230 216 50 chr9 119924317 119924456 -22346988 + L2 LINE L2 3148 3309 -4 2146 234 39 39 chr9 119924602 119925141 -22346303 + MLT1F LTR MaLR 4 542 0 313 280 45 30 chr9 119925412 119925544 -22345900 + MIR3 SINE MIR 15 148 -60 343 318 52 19 chr9 119925618 119925772 -22345672 + MIR SINE MIR 92 250 -12 1669 272 114 111 chr9 119925846 119927278 -22344166 + L1M2 LINE L1 2 1438 -5411 9405 191 52 46 chr9 119927281 119927423 -22344021 + L1PA13 LINE L1 2941 3081 -3082 2296 100 3 13 chr9 119927423 119927732 -22343712 + AluSp SINE Alu 1 306 -7 9405 191 52 46 chr9 119927732 119928410 -22343034 + L1PA13 LINE L1 3081 3754 -2409 2386 76 0 20 chr9 119928410 119928713 -22342731 + AluSg SINE Alu 1 297 -13 9405 191 52 46 chr9 119928713 119929816 -22341628 + L1PA13 LINE L1 3754 4849 -1314 2238 129 161 11 chr9 119929816 119930188 -22341256 - MSTA LTR MaLR 0 428 1 9405 191 52 46 chr9 119930188 119930905 -22340539 + L1PA13 LINE L1 4849 5612 -551 2219 131 0 0 chr9 119930905 119931217 -22340227 + AluSx SINE Alu 1 312 0 9405 191 52 46 chr9 119931217 119931769 -22339675 + L1PA13 LINE L1 5612 6159 -4 519 235 43 68 chr9 119931828 119932062 -22339382 - L2 LINE L2 -7 3306 3079 879 278 20 28 chr9 119932074 119932466 -22338978 - L1MDa LINE L1 -1406 5134 4746 * 4683 229 31 64 chr9 119932443 119933336 -22338108 - L1MDa LINE L1 -1701 4839 4026 207 0 0 0 chr9 119933336 119933359 -22338085 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4683 229 31 64 chr9 119933359 119934126 -22337318 - L1MDa LINE L1 -2514 4026 3235 1320 195 69 46 chr9 119934137 119934485 -22336959 + MLT1A1 LTR MaLR 1 356 -9 2290 254 40 1 chr9 119934508 119935161 -22336283 - L1MDa LINE L1 -3317 3223 2546 1601 213 17 3 chr9 119935161 119935457 -22335987 + AluJb SINE Alu 1 300 -12 2526 132 97 2 chr9 119935554 119935979 -22335465 + MER4E LTR ERV1 1 465 -314 1155 106 0 0 chr9 119936032 119936183 -22335261 + MER4E LTR ERV1 616 766 0 1052 184 0 0 chr9 119936187 119936345 -22335099 - FRAM SINE Alu -7 159 2 1895 256 102 54 chr9 119936373 119936966 -22334478 - L1MDa LINE L1 -5636 904 260 360 0 0 0 chr9 119936966 119937006 -22334438 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1895 256 102 54 chr9 119937006 119937239 -22334205 - L1MDa LINE L1 -6280 260 39 642 185 172 7 chr9 119937240 119937391 -22334053 + MER58C DNA MER1_type 40 215 0 275 340 0 9 chr9 119937397 119937503 -22333941 - L2 LINE L2 -520 2794 2690 261 308 33 22 chr9 119937653 119937744 -22333700 - MIR SINE MIR -168 94 3 303 325 17 17 chr9 119938292 119938409 -22333035 + MIR3 SINE MIR 56 172 -36 2042 105 3 7 chr9 119938495 119938806 -22332638 - AluSx SINE Alu 0 310 1 2052 105 16 40 chr9 119938822 119939126 -22332318 - AluSq SINE Alu -16 297 1 1174 137 16 21 chr9 119939530 119939720 -22331724 - AluJo SINE Alu -3 309 121 617 194 56 14 chr9 119939730 119939874 -22331570 - L1MB7 LINE L1 0 6184 6035 1129 161 3 167 chr9 119939889 119940230 -22331214 - AluJo SINE Alu -16 286 2 6533 37 0 8 chr9 119940233 119941026 -22330418 - SVA Other Other 0 1386 638 228 288 59 17 chr9 119941128 119941246 -22330198 + MIR SINE MIR 125 247 -15 387 205 48 0 chr9 119941487 119941570 -22329874 + L2 LINE L2 3227 3313 0 259 355 157 3 chr9 119942221 119942514 -22328930 - L3 LINE CR1 -94 1483 1146 219 273 0 0 chr9 119942562 119942617 -22328827 + (TTA)n Simple_repeat Simple_repeat 1 55 0 530 309 83 14 chr9 119942624 119942841 -22328603 - MIR SINE MIR -23 239 8 189 299 45 0 chr9 119943438 119943505 -22327939 - MIR SINE MIR -67 195 126 1441 140 0 23 chr9 119943691 119943912 -22327532 - AluSg/x SINE Alu -13 297 82 320 306 132 0 chr9 119944242 119944363 -22327081 - MIR SINE MIR -3 259 123 213 315 20 67 chr9 119945283 119945432 -22326012 - MIR3 SINE MIR -62 146 5 322 288 230 16 chr9 119945986 119946177 -22325267 - MIR SINE MIR -14 248 17 390 260 190 40 chr9 119946740 119946886 -22324558 + MIR SINE MIR 20 205 -57 2300 96 17 0 chr9 119946886 119947187 -22324257 + AluY SINE Alu 1 306 -5 390 260 190 40 chr9 119947187 119947240 -22324204 + MIR SINE MIR 205 249 -13 433 274 126 40 chr9 119947412 119947587 -22323857 - MIR SINE MIR -20 242 53 341 251 49 68 chr9 119947598 119947761 -22323683 + L3 LINE CR1 1097 1256 -321 281 256 31 157 chr9 119947836 119947903 -22323541 - MIR SINE MIR -48 214 140 1844 163 0 10 chr9 119947903 119948191 -22323253 + AluJo SINE Alu 7 291 -21 281 256 31 157 chr9 119948191 119948346 -22323098 - MIR SINE MIR -122 140 20 218 178 44 0 chr9 119948741 119948786 -22322658 + A-rich Low_complexity Low_complexity 4 50 0 298 322 16 25 chr9 119948983 119949104 -22322340 + MIR3 SINE MIR 11 130 -78 249 153 237 0 chr9 119949121 119949180 -22322264 - L2 LINE L2 0 3313 3241 2186 134 33 30 chr9 119949523 119949859 -22321585 - MER1B DNA MER1_type 0 337 1 304 213 12 62 chr9 119949928 119950008 -22321436 - L2 LINE L2 0 3313 3238 757 168 0 0 chr9 119950063 119950170 -22321274 + AluJb SINE Alu 2 108 -204 1320 251 94 38 chr9 119950537 119951016 -22320428 + MLT1F1 LTR MaLR 61 566 -1 238 303 83 9 chr9 119951104 119951213 -22320231 - L2 LINE L2 -1 3271 3155 184 358 124 0 chr9 119951652 119951789 -22319655 + MIR SINE MIR 109 262 0 1200 65 0 0 chr9 119952692 119952831 -22318613 - AluY SINE Alu -171 140 2 1835 146 6 50 chr9 119952831 119953154 -22318290 - AluJo SINE Alu -3 309 1 754 332 54 25 chr9 119953418 119953825 -22317619 - L2 LINE L2 -555 2759 2341 27 0 0 0 chr9 119954065 119954092 -22317352 + AT_rich Low_complexity Low_complexity 1 27 0 253 246 14 29 chr9 119954457 119954526 -22316918 - L2 LINE L2 0 3272 3205 2389 76 0 0 chr9 119956105 119956396 -22315048 - AluY SINE Alu -20 291 1 242 291 81 23 chr9 119956402 119956488 -22314956 + L2 LINE L2 3182 3272 0 320 323 0 39 chr9 119956544 119956595 -22314849 - MIR SINE MIR -56 206 155 2129 121 0 29 chr9 119956595 119956908 -22314536 - AluSx SINE Alu -8 304 1 320 323 0 39 chr9 119956908 119956983 -22314461 - MIR SINE MIR -107 155 85 1252 284 67 36 chr9 119956997 119957522 -22313922 - MLT1H1 LTR MaLR -14 541 1 21 0 0 0 chr9 119957952 119957973 -22313471 + AT_rich Low_complexity Low_complexity 1 21 0 1034 259 88 16 chr9 119958130 119958450 -22312994 - L1ME1 LINE L1 -3 6163 5821 2212 102 0 0 chr9 119958452 119958766 -22312678 - AluSq SINE Alu 0 314 1 2452 150 6 70 chr9 119958766 119958844 -22312600 - L1MB8 LINE L1 -142 6036 5955 1640 154 68 0 chr9 119958844 119959124 -22312320 - AluSx SINE Alu -13 299 1 2452 150 6 70 chr9 119959124 119959545 -22311899 - L1MB8 LINE L1 -223 5955 5569 227 108 27 0 chr9 119959550 119959587 -22311857 - L1M4 LINE L1 -572 5612 5575 237 302 93 22 chr9 119959892 119960031 -22311413 - MIR SINE MIR -9 253 105 644 330 51 81 chr9 119960572 119961275 -22310169 - L2 LINE L2 -19 3253 2561 275 270 9 43 chr9 119961544 119961659 -22309785 + A-rich Low_complexity Low_complexity 5 115 0 291 122 0 0 chr9 119962384 119962433 -22309011 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 942 191 62 122 chr9 119962484 119962820 -22308624 - MLT1B LTR MaLR -5 385 70 1282 212 39 67 chr9 119962823 119963181 -22308263 + MLT1B LTR MaLR 5 352 -38 580 153 0 0 chr9 119963182 119963267 -22308177 + Tigger4(Zombi) DNA MER2_type 1 85 -2646 753 132 53 0 chr9 119963282 119963396 -22308048 - MER30 DNA MER1_type 0 230 111 480 301 50 46 chr9 119963420 119963552 -22307892 - L2 LINE L2 -830 2484 2354 2162 137 0 3 chr9 119963552 119963865 -22307579 - AluSx SINE Alu 0 312 1 923 131 0 21 chr9 119963866 119964011 -22307433 - L1PA15 LINE L1 -4 6161 6020 480 301 50 46 chr9 119964011 119964115 -22307329 - L2 LINE L2 -959 2355 2245 772 298 161 28 chr9 119964228 119964688 -22306756 + LTR33 LTR ERVL 1 521 0 276 293 18 22 chr9 119965313 119965543 -22305901 + A-rich Low_complexity Low_complexity 3 305 0 745 169 0 0 chr9 119965548 119965666 -22305778 + L1PB1 LINE L1 6008 6125 -26 1745 118 8 0 chr9 119965676 119965930 -22305514 + L1MA5 LINE L1 6037 6292 -8 1395 143 15 0 chr9 119966118 119966321 -22305123 + AluSg/x SINE Alu 77 282 -27 234 0 0 0 chr9 119966321 119966347 -22305097 + (CA)n Simple_repeat Simple_repeat 2 27 0 421 384 33 4 chr9 119966497 119966739 -22304705 - MIR SINE MIR -11 251 3 319 350 134 11 chr9 119967070 119967256 -22304188 + MIR SINE MIR 54 262 0 287 281 148 30 chr9 119967363 119967498 -22303946 - MIR3 SINE MIR -38 170 20 1384 220 38 35 chr9 119967527 119967873 -22303571 + MLT2D LTR ERVL 3 349 -65 2303 122 0 0 chr9 119967894 119968198 -22303246 - AluSg SINE Alu -6 304 1 354 61 0 0 chr9 119968286 119968335 -22303109 + (TG)n Simple_repeat Simple_repeat 2 50 0 259 178 0 0 chr9 119968336 119968381 -22303063 + MLT2D LTR ERVL 420 464 0 190 283 0 0 chr9 119969074 119969120 -22302324 + MIR3 SINE MIR 157 202 -6 435 296 73 6 chr9 119969405 119969584 -22301860 + MIR SINE MIR 50 240 -22 1542 189 10 37 chr9 119969585 119969881 -22301563 - AluJo SINE Alu -24 288 1 541 236 18 0 chr9 119969926 119970036 -22301408 - FLAM_A SINE Alu -26 116 5 202 334 108 71 chr9 119970280 119970603 -22300841 - L2 LINE L2 -5 3267 2933 463 289 44 77 chr9 119970833 119971083 -22300361 + MIR SINE MIR 17 249 -13 216 353 12 0 chr9 119971248 119971333 -22300111 + L2 LINE L2 732 817 -2497 194 385 33 0 chr9 119971761 119971883 -22299561 - MIR SINE MIR 0 262 137 509 281 20 30 chr9 119971925 119972124 -22299320 + MLT1H LTR MaLR 94 290 -259 320 268 54 36 chr9 119972365 119972477 -22298967 - MIR SINE MIR -87 175 62 240 278 111 0 chr9 119973310 119973400 -22298044 + MIR SINE MIR 25 124 -84 23 0 0 0 chr9 119973582 119973605 -22297839 + AT_rich Low_complexity Low_complexity 1 23 0 239 275 9 55 chr9 119973611 119973720 -22297724 + MIR SINE MIR 51 154 -108 230 49 0 49 chr9 119974367 119974408 -22297036 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 283 327 97 30 chr9 119974775 119974940 -22296504 + L3 LINE CR1 1010 1185 -392 340 355 18 6 chr9 119975089 119975258 -22296186 - MIR SINE MIR -1 261 91 941 197 22 0 chr9 119975260 119975438 -22296006 - MER20 DNA MER1_type 0 219 38 343 321 133 5 chr9 119977271 119977467 -22293977 + MIR SINE MIR 27 247 -15 193 355 166 18 chr9 119977549 119977718 -22293726 + L2 LINE L2 2566 2759 -555 216 326 42 0 chr9 119977996 119978091 -22293353 + MIR SINE MIR 133 231 -31 231 222 0 0 chr9 119978128 119978182 -22293262 + (TTA)n Simple_repeat Simple_repeat 1 54 0 674 288 27 17 chr9 119978856 119979100 -22292344 - MIR SINE MIR -8 254 9 396 0 0 0 chr9 119979923 119979967 -22291477 + (TG)n Simple_repeat Simple_repeat 2 45 0 270 0 0 0 chr9 119979966 119979996 -22291448 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 259 305 49 0 chr9 119980654 119980736 -22290708 + L2 LINE L2 3186 3271 -1 407 225 7 116 chr9 119980746 119980814 -22290630 + MIR3 SINE MIR 76 123 -85 360 286 95 25 chr9 119980814 119981055 -22290389 + MIR SINE MIR 5 262 0 407 225 7 116 chr9 119981055 119981124 -22290320 + MIR3 SINE MIR 123 198 -10 385 238 37 67 chr9 119981862 119982026 -22289418 - MLT1H LTR MaLR -7 542 384 243 252 48 22 chr9 119982021 119982138 -22289306 - MLT1F LTR MaLR -270 279 121 * 4174 157 87 5 chr9 119982297 119983124 -22288320 - MER4D LTR ERV1 -8 895 1 207 100 0 0 chr9 119983492 119983522 -22287922 + (TATG)n Simple_repeat Simple_repeat 2 31 0 1818 186 6 6 chr9 119983927 119984238 -22287206 - AluJb SINE Alu -1 311 1 262 254 25 41 chr9 119984255 119984377 -22287067 + L1M4 LINE L1 2206 2325 -3821 353 332 55 27 chr9 119984397 119984725 -22286719 + L1M4 LINE L1 2330 2666 -3480 2329 196 22 114 chr9 119985110 119985192 -22286252 + LTR8 LTR ERV1 1 89 -602 1898 142 19 48 chr9 119985192 119985565 -22285879 + THE1B LTR MaLR 1 362 -2 2329 196 22 114 chr9 119985565 119985862 -22285582 + LTR8 LTR ERV1 89 412 -279 1740 94 5 0 chr9 119985862 119986086 -22285358 - AluSc SINE Alu -1 308 84 2329 196 22 114 chr9 119986086 119986283 -22285161 + LTR8 LTR ERV1 412 494 -197 2531 62 0 0 chr9 119986283 119986590 -22284854 + AluY SINE Alu 1 307 -4 2329 196 22 114 chr9 119986590 119986772 -22284672 + LTR8 LTR ERV1 494 691 0 279 443 0 0 chr9 119987359 119987472 -22283972 - L2 LINE L2 -24 3248 3136 300 311 107 25 chr9 119987829 119987951 -22283493 - MIR SINE MIR -61 147 16 397 307 57 7 chr9 119989277 119989417 -22282027 - MIR SINE MIR -56 206 60 507 189 0 0 chr9 119989436 119989531 -22281913 - AluJb SINE Alu -8 304 210 467 268 106 2 chr9 119989954 119990107 -22281337 - MIR3 SINE MIR -57 151 2 277 316 143 15 chr9 119990111 119990244 -22281200 - MIR3 SINE MIR -25 183 34 235 287 0 46 chr9 119990257 119990344 -22281100 - L2 LINE L2 -8 3305 3223 588 304 73 14 chr9 119990703 119990923 -22280521 - MIR SINE MIR -13 249 17 638 234 132 0 chr9 119991029 119991196 -22280248 + MER5A DNA MER1_type 1 189 0 350 266 11 0 chr9 119991841 119991935 -22279509 - HERV16 LTR ERVL -1704 3292 3198 1661 315 29 9 chr9 119992108 119992225 -22279219 - HERV16 LTR ERVL -1900 3096 2983 1773 163 121 16 chr9 119992225 119992612 -22278832 + MSTA LTR MaLR 1 428 0 1661 315 29 9 chr9 119992612 119993190 -22278254 - HERV16 LTR ERVL -2013 2983 2567 1873 219 44 25 chr9 119993303 119993980 -22277464 - L1M4 LINE L1 -1328 4818 4129 1811 287 67 33 chr9 119993997 119995204 -22276240 - L1ME LINE L1 -4827 1253 6 488 306 46 32 chr9 119995342 119995626 -22275818 - L1ME LINE L1 -351 5770 5483 206 315 45 54 chr9 119996260 119996371 -22275073 + L3 LINE CR1 42 151 -1426 286 0 91 0 chr9 119996391 119996435 -22275009 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2132 105 14 3 chr9 119996483 119996768 -22274676 - AluSx SINE Alu -24 288 1 454 319 38 0 chr9 119996880 119997037 -22274407 + L3 LINE CR1 297 459 -1118 349 234 127 44 chr9 119997140 119997298 -22274146 + L2 LINE L2 3142 3312 -1 297 0 0 0 chr9 119997299 119997332 -22274112 + (TG)n Simple_repeat Simple_repeat 2 34 0 186 398 9 9 chr9 119997364 119997472 -22273972 + L3 LINE CR1 492 599 -978 225 363 90 17 chr9 119997534 119997768 -22273676 + MIR SINE MIR 3 253 -9 757 343 92 19 chr9 119997795 119998209 -22273235 + L3 LINE CR1 680 1123 -454 616 268 50 47 chr9 119998256 119998573 -22272871 + L1ME4a LINE L1 5457 5774 -347 209 307 20 10 chr9 119998786 119998887 -22272557 + (TA)n Simple_repeat Simple_repeat 1 102 0 366 23 0 0 chr9 119998957 119999000 -22272444 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 302 229 48 24 chr9 119999131 119999214 -22272230 + L1ME4a LINE L1 6033 6117 -4 1689 149 107 7 chr9 119999272 119999553 -22271891 + AluSx SINE Alu 1 309 -3 431 265 35 15 chr9 119999763 119999907 -22271537 + MIR SINE MIR 49 194 -63 1077 288 61 81 chr9 120000120 120000727 -22270717 - MLT1G LTR MaLR 0 590 1 236 256 26 43 chr9 120001069 120001186 -22270258 - L1ME4a LINE L1 -87 6034 5920 239 309 0 31 chr9 120001651 120001748 -22269696 + MIR SINE MIR 33 126 -82 244 367 0 18 chr9 120002344 120002453 -22268991 + MIR SINE MIR 47 153 -109 430 292 15 8 chr9 120002510 120002640 -22268804 + L2 LINE L2 3183 3313 0 322 337 109 0 chr9 120004887 120005062 -22266382 - MIR SINE MIR -18 244 51 191 269 90 13 chr9 120005603 120005681 -22265763 + MIR SINE MIR 82 165 -97 349 269 76 41 chr9 120005831 120006002 -22265442 + L2 LINE L2 3136 3312 -1 273 57 0 0 chr9 120006210 120006245 -22265199 + (CA)n Simple_repeat Simple_repeat 2 36 0 237 271 0 0 chr9 120006440 120006488 -22264956 + (TGG)n Simple_repeat Simple_repeat 2 49 0 2064 147 0 7 chr9 120006659 120006959 -22264485 - AluSx SINE Alu -8 304 7 839 238 55 43 chr9 120007789 120008045 -22263399 + MIR SINE MIR 3 261 -1 462 303 33 0 chr9 120009145 120009267 -22262177 + L2 LINE L2 3147 3272 0 189 207 46 115 chr9 120009416 120009503 -22261941 - MIR3 SINE MIR -17 191 111 554 317 36 20 chr9 120010108 120010357 -22261087 - MIR SINE MIR -2 260 8 316 304 40 16 chr9 120010572 120010697 -22260747 - MIR SINE MIR -100 162 35 302 316 35 58 chr9 120011001 120011175 -22260269 + MIR SINE MIR 79 248 -14 245 355 71 51 chr9 120011584 120012082 -22259362 + L2 LINE L2 2635 3171 -101 198 309 0 48 chr9 120013313 120013397 -22258047 + MIR SINE MIR 104 183 -79 409 316 68 19 chr9 120014193 120014399 -22257045 + MIR SINE MIR 46 261 -1 186 167 0 0 chr9 120014456 120014492 -22256952 + A-rich Low_complexity Low_complexity 1 36 0 186 200 0 25 chr9 120014939 120014979 -22256465 - L2 LINE L2 -4 3268 3230 308 301 153 39 chr9 120015221 120015424 -22256020 + MIR SINE MIR 21 246 -16 198 138 0 0 chr9 120015437 120015466 -22255978 + L2 LINE L2 3266 3294 -19 1111 274 61 20 chr9 120015644 120016038 -22255406 - L2 LINE L2 0 3313 2904 188 0 74 0 chr9 120016428 120016455 -22254989 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 469 291 133 25 chr9 120016567 120016763 -22254681 + MIR SINE MIR 20 236 -26 2369 116 40 32 chr9 120016769 120017141 -22254303 + THE1C LTR MaLR 1 375 0 700 275 45 21 chr9 120017161 120017448 -22253996 + L1ME3 LINE L1 5757 6050 -112 580 264 6 45 chr9 120017454 120017632 -22253812 + MER3 DNA MER1_type 5 128 -81 309 176 59 35 chr9 120017650 120017735 -22253709 + L1ME3 LINE L1 6046 6132 -30 198 301 26 72 chr9 120017793 120017946 -22253498 - MIR SINE MIR -56 206 61 377 282 17 43 chr9 120018015 120018132 -22253312 - L2 LINE L2 -5 3308 3195 22 56 0 0 chr9 120018900 120018936 -22252508 + AT_rich Low_complexity Low_complexity 1 36 0 432 259 62 40 chr9 120018949 120019173 -22252271 + L1MC/D LINE L1 2956 3184 -2962 464 0 0 18 chr9 120019395 120019452 -22251992 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 324 291 18 9 chr9 120019562 120019672 -22251772 + L1MC/D LINE L1 3364 3474 -2672 319 277 54 23 chr9 120019932 120020062 -22251382 + L1MC/D LINE L1 3853 3986 -2160 286 333 126 25 chr9 120020301 120020935 -22250509 + L1MC/D LINE L1 4204 4901 -1245 394 251 90 72 chr9 120020964 120021243 -22250201 + L1MC/D LINE L1 4972 5255 -891 307 242 152 20 chr9 120021274 120021518 -22249926 + L1MC/D LINE L1 5266 5541 -2267 1491 206 35 3 chr9 120021923 120022209 -22249235 + AluJo SINE Alu 2 296 -16 474 289 95 11 chr9 120022491 120022681 -22248763 - MIR SINE MIR -30 232 27 390 363 35 32 chr9 120023050 120023334 -22248110 + L2 LINE L2 2616 2900 -414 406 288 24 8 chr9 120023510 120023635 -22247809 + L2 LINE L2 3186 3312 -1 348 281 37 37 chr9 120024366 120024501 -22246943 - L2 LINE L2 0 3313 3179 192 222 11 22 chr9 120024504 120024594 -22246850 + (TA)n Simple_repeat Simple_repeat 1 89 0 229 197 148 0 chr9 120024604 120024665 -22246779 - L1MC3 LINE L1 -1135 6650 6581 239 344 110 7 chr9 120025180 120025334 -22246110 - MIR3 SINE MIR -14 194 25 200 285 134 77 chr9 120025550 120025796 -22245648 + L2 LINE L2 2831 3090 -182 237 214 0 0 chr9 120025840 120025882 -22245562 - MIR SINE MIR -12 250 209 507 261 36 0 chr9 120026482 120026620 -22244824 - MIR SINE MIR -63 199 57 376 320 141 26 chr9 120026841 120027075 -22244369 + MIR SINE MIR 1 261 -1 240 100 0 0 chr9 120027586 120027626 -22243818 + (CA)n Simple_repeat Simple_repeat 2 41 0 230 362 96 69 chr9 120028086 120028165 -22243279 + L2 LINE L2 2858 2933 -339 388 121 0 15 chr9 120028165 120028231 -22243213 + L1MA7 LINE L1 6227 6291 0 230 362 96 69 chr9 120028231 120028369 -22243075 + L2 LINE L2 2933 3081 -191 678 235 21 119 chr9 120028652 120028937 -22242507 - MIR SINE MIR -1 261 5 315 261 0 0 chr9 120030077 120030146 -22241298 - MIR3 SINE MIR -53 155 87 260 266 45 78 chr9 120030146 120030300 -22241144 - MIR SINE MIR -26 236 88 415 368 14 9 chr9 120031272 120031492 -22239952 + MIR SINE MIR 12 232 -30 2327 63 0 3 chr9 120031536 120031865 -22239579 + AluY SINE Alu 1 328 0 309 263 32 32 chr9 120031969 120032064 -22239380 - L2 LINE L2 -4 3309 3215 2121 121 3 0 chr9 120032120 120032418 -22239026 + AluSg SINE Alu 1 299 -11 361 205 36 33 chr9 120032745 120032868 -22238576 + MIR3 SINE MIR 67 190 -18 262 328 46 84 chr9 120033551 120033682 -22237762 - MIR SINE MIR -66 142 16 569 88 12 12 chr9 120034448 120034528 -22236916 + MADE1 DNA Mariner 1 80 0 291 354 96 42 chr9 120034537 120034870 -22236574 - L2 LINE L2 -86 3186 2836 299 266 28 37 chr9 120034922 120035031 -22236413 - MIR SINE MIR -96 166 59 632 313 55 55 chr9 120035046 120035410 -22236034 + L2 LINE L2 2946 3309 -4 256 331 42 28 chr9 120035514 120035656 -22235788 - L2 LINE L2 -580 2734 2591 273 354 26 0 chr9 120036276 120036389 -22235055 - L2 LINE L2 -9 3263 3148 404 269 146 12 chr9 120036451 120036622 -22234822 - MIR SINE MIR -20 242 49 475 233 116 44 chr9 120037853 120038088 -22233356 + MIR SINE MIR 17 258 -4 242 244 73 37 chr9 120038096 120038178 -22233266 - MIR SINE MIR 0 262 178 250 215 8 31 chr9 120038580 120038710 -22232734 + (CTATT)n Simple_repeat Simple_repeat 4 130 0 288 258 30 0 chr9 120039094 120039160 -22232284 - L2 LINE L2 -17 3296 3229 411 340 138 5 chr9 120039184 120039387 -22232057 - MIR SINE MIR -16 246 17 379 322 66 7 chr9 120040295 120040447 -22230997 - MIR SINE MIR -101 161 1 369 288 25 49 chr9 120040622 120040785 -22230659 - MIR SINE MIR -46 216 58 580 205 74 70 chr9 120040860 120041104 -22230340 + MER112 DNA MER1_type 7 251 -9 793 321 22 11 chr9 120041114 120041391 -22230053 + L3 LINE CR1 1225 1504 -73 191 289 116 17 chr9 120041650 120041762 -22229682 + MIR SINE MIR 15 204 -4 236 294 20 68 chr9 120042499 120042645 -22228799 + L2 LINE L2 2829 2967 -305 202 200 0 0 chr9 120043019 120043059 -22228385 + MIR SINE MIR 104 143 -65 4490 112 22 5 chr9 120043138 120043738 -22227706 + MER4B LTR ERV1 1 610 0 205 302 0 0 chr9 120043839 120043892 -22227552 + CT-rich Low_complexity Low_complexity 3 55 0 304 287 35 23 chr9 120044534 120044621 -22226823 + MIR SINE MIR 58 145 -63 216 311 66 0 chr9 120044940 120045001 -22226443 - L2 LINE L2 -59 3254 3190 218 56 28 0 chr9 120046233 120046269 -22225175 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 713 311 133 46 chr9 120046269 120046465 -22224979 + MLT1K LTR MaLR 23 201 -387 1992 216 46 46 chr9 120046465 120046966 -22224478 + MLT1D LTR MaLR 5 505 0 713 311 133 46 chr9 120046966 120047280 -22224164 + MLT1K LTR MaLR 201 578 -10 652 338 74 33 chr9 120047303 120047670 -22223774 - L3 LINE CR1 -145 1432 1051 932 154 0 0 chr9 120047728 120047871 -22223573 + AluJo SINE Alu 1 143 -169 207 150 0 67 chr9 120047886 120047946 -22223498 + (TAAAAA)n Simple_repeat Simple_repeat 3 58 0 615 299 75 9 chr9 120048150 120048364 -22223080 + MIR SINE MIR 11 238 -24 1455 292 29 6 chr9 120048942 120049418 -22222026 - LTR16C LTR ERVL 0 491 5 205 196 20 0 chr9 120050140 120050191 -22221253 + (CA)n Simple_repeat Simple_repeat 1 52 0 294 206 0 29 chr9 120050572 120050640 -22220804 + L1MD3 LINE L1 7152 7217 -778 443 207 52 0 chr9 120050876 120050992 -22220452 + L1MD3 LINE L1 7155 7276 -719 568 259 32 9 chr9 120050996 120051170 -22220274 + MLT1F1 LTR MaLR 3 183 -372 1588 142 81 169 chr9 120051172 120051762 -22219682 + L1MD3 LINE L1 7458 7995 0 283 283 94 9 chr9 120052843 120052949 -22218495 + MIR SINE MIR 13 127 -135 190 297 0 68 chr9 120053001 120053075 -22218369 + L2 LINE L2 3204 3272 0 415 246 72 36 chr9 120053084 120053222 -22218222 + MIR SINE MIR 120 262 0 322 310 28 21 chr9 120053830 120053972 -22217472 - MIR SINE MIR -74 188 46 407 298 84 26 chr9 120054012 120054203 -22217241 - MIR SINE MIR -12 250 49 236 329 46 46 chr9 120054215 120054306 -22217138 + MIR3 SINE MIR 54 147 -61 1479 201 0 28 chr9 120054306 120054594 -22216850 - L1MB1 LINE L1 0 6168 5889 236 329 46 46 chr9 120054594 120054654 -22216790 + MIR3 SINE MIR 146 205 -3 296 293 20 80 chr9 120054754 120054904 -22216540 + MIR SINE MIR 63 203 -59 290 336 60 44 chr9 120055178 120055226 -22216218 + MIR SINE MIR 7 53 -209 2661 108 8 0 chr9 120055226 120055578 -22215866 - THE1A LTR MaLR 0 355 1 12146 99 8 1 chr9 120055578 120057147 -22214297 - THE1A-int LTR MaLR 0 1580 1 2750 103 9 0 chr9 120057154 120057502 -22213942 - THE1A LTR MaLR -4 351 1 290 336 60 44 chr9 120057502 120057694 -22213750 + MIR SINE MIR 58 260 -2 2199 114 0 0 chr9 120058208 120058498 -22212946 + AluY SINE Alu 1 290 -21 274 308 51 8 chr9 120058632 120058749 -22212695 - MIR SINE MIR -21 241 120 373 196 14 16 chr9 120058966 120059065 -22212379 - MLT1B LTR MaLR -233 146 44 1010 174 7 19 chr9 120059212 120059470 -22211974 - MLT1B-int LTR MaLR -1172 199 1 1659 171 45 77 chr9 120059470 120059704 -22211740 - MLT1B LTR MaLR 0 390 173 1991 107 0 15 chr9 120059704 120059974 -22211470 - AluSx SINE Alu -11 301 36 1659 171 45 77 chr9 120059974 120060142 -22211302 - MLT1B LTR MaLR -217 173 1 542 287 36 20 chr9 120060254 120060449 -22210995 - MIR SINE MIR 0 262 65 409 312 36 7 chr9 120060921 120061059 -22210385 + MIR SINE MIR 50 191 -71 883 140 4 183 chr9 120061125 120061360 -22210084 + 7SK RNA RNA 1 193 0 286 260 14 0 chr9 120061517 120061590 -22209854 - L1MA10 LINE L1 -1 6333 6260 * 813 145 13 5 chr9 120061589 120061738 -22209706 + L1M1 LINE L1 5517 5666 -634 212 385 139 5 chr9 120061812 120062020 -22209424 + MIR SINE MIR 11 246 -16 220 125 25 0 chr9 120062527 120062567 -22208877 + (CA)n Simple_repeat Simple_repeat 1 41 0 257 303 45 53 chr9 120063399 120063531 -22207913 + MIR SINE MIR 22 152 -110 656 250 0 7 chr9 120063601 120063745 -22207699 - MIR SINE MIR -100 162 20 844 215 16 0 chr9 120063760 120063946 -22207498 - L1MD3 LINE L1 -12 7983 7795 1442 194 59 29 chr9 120064235 120064576 -22206868 - L1MC4a LINE L1 -188 7620 7270 1160 254 74 43 chr9 120064581 120065026 -22206418 + MLT1C LTR MaLR 9 467 0 1607 164 20 7 chr9 120065027 120065325 -22206119 - L1MC4a LINE L1 -532 7276 6975 388 289 37 42 chr9 120065480 120065670 -22205774 - MIR SINE MIR -71 191 3 344 255 97 9 chr9 120066838 120066955 -22204489 + MLT1H LTR MaLR 63 223 -232 498 263 51 0 chr9 120067136 120067273 -22204171 - L2 LINE L2 -243 3070 2927 2455 153 30 35 chr9 120067314 120067744 -22203700 + MSTC LTR MaLR 1 428 0 767 177 146 24 chr9 120067888 120068052 -22203392 - MER20 DNA MER1_type 0 219 36 381 22 0 0 chr9 120068083 120068129 -22203315 + (GA)n Simple_repeat Simple_repeat 2 47 0 224 296 28 14 chr9 120068582 120068653 -22202791 - MIR SINE MIR -120 142 71 182 283 19 0 chr9 120069381 120069434 -22202010 + MIR SINE MIR 73 126 -82 281 276 310 20 chr9 120069464 120069667 -22201777 - MIR SINE MIR 0 262 1 517 260 51 31 chr9 120070012 120070208 -22201236 - Charlie8 DNA MER1_type -2139 278 79 189 0 0 0 chr9 120070224 120070245 -22201199 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 917 293 125 23 chr9 120070404 120070931 -22200513 + L2 LINE L2 2739 3313 0 408 276 68 41 chr9 120071002 120071223 -22200221 + L1ME LINE L1 5582 5808 -313 236 298 198 16 chr9 120072451 120072572 -22198872 - L3 LINE CR1 -13 1564 1422 239 371 9 17 chr9 120072648 120072764 -22198680 + MIR3 SINE MIR 5 119 -89 215 325 103 8 chr9 120072888 120073005 -22198439 + L2 LINE L2 3145 3272 0 2135 132 0 7 chr9 120073274 120073584 -22197860 + AluSc SINE Alu 1 308 -1 371 303 72 7 chr9 120074281 120074433 -22197011 - MER112 DNA MER1_type -12 248 87 182 375 14 14 chr9 120074632 120074704 -22196740 + MIR SINE MIR 24 95 -167 291 54 0 0 chr9 120074871 120074908 -22196536 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 555 289 159 47 chr9 120074912 120075314 -22196130 - L2 LINE L2 0 3313 2867 192 161 0 0 chr9 120075995 120076026 -22195418 + MIR SINE MIR 49 79 -183 766 204 12 12 chr9 120076052 120076214 -22195230 + MIR SINE MIR 60 221 -41 822 102 8 24 chr9 120077035 120077162 -22194282 + 7SK RNA RNA 1 125 -68 26487 138 15 20 chr9 120077274 120077511 -22193933 - L1PA8A LINE L1 -123 6323 6086 809 115 0 0 chr9 120077511 120077624 -22193820 - L1PA7 LINE L1 -1 6153 6041 26487 138 15 20 chr9 120077624 120079182 -22192262 - L1PA8A LINE L1 -360 6086 4522 1584 54 0 0 chr9 120079182 120079368 -22192076 - L1PA4 LINE L1 -3 6152 5967 26487 138 15 20 chr9 120079368 120082630 -22188814 - L1PA8A LINE L1 -1924 4522 1235 231 103 0 0 chr9 120082630 120082669 -22188775 + (TTG)n Simple_repeat Simple_repeat 1 39 0 26487 138 15 20 chr9 120082669 120083309 -22188135 - L1PA8A LINE L1 -5211 1235 593 883 135 8 0 chr9 120083324 120083457 -22187987 - AluSq/x SINE Alu -178 134 1 236 357 47 23 chr9 120083494 120083623 -22187821 - L2 LINE L2 -2 3311 3180 306 279 47 12 chr9 120084078 120084164 -22187280 - L2 LINE L2 -17 3255 3167 344 234 50 67 chr9 120084490 120084646 -22186798 - MIR SINE MIR -54 154 3 306 324 15 37 chr9 120085007 120085143 -22186301 + L3 LINE CR1 810 942 -635 991 223 39 18 chr9 120085143 120085372 -22186072 + L1M2c LINE L1 1 234 -6555 9358 224 78 35 chr9 120085683 120089186 -22182258 + L1M2c LINE L1 1328 5068 -1720 2216 139 119 21 chr9 120089186 120089574 -22181870 + MSTA LTR MaLR 1 426 -2 9358 224 78 35 chr9 120089574 120090044 -22181400 + L1M2c LINE L1 5068 5516 -1272 246 357 64 25 chr9 120091539 120091696 -22179748 + MIR3 SINE MIR 45 207 -1 753 280 121 45 chr9 120092090 120092301 -22179143 - L2 LINE L2 -5 3308 3114 2098 117 0 3 chr9 120092301 120092618 -22178826 - AluSx SINE Alu 0 316 1 753 280 121 45 chr9 120092618 120092852 -22178592 - L2 LINE L2 -199 3114 2828 670 232 66 7 chr9 120093232 120093383 -22178061 + MER58B DNA MER1_type 182 341 0 232 351 46 30 chr9 120093450 120093581 -22177863 + MIR3 SINE MIR 13 145 -63 1021 88 0 0 chr9 120093586 120093711 -22177733 + AluSq/x SINE Alu 1 125 -188 338 324 27 0 chr9 120094046 120094157 -22177287 + MIR SINE MIR 93 206 -56 2061 215 66 10 chr9 120094231 120094715 -22176729 - L1MB7 LINE L1 -10 6174 5664 290 245 19 94 chr9 120094723 120094792 -22176652 + MIR SINE MIR 89 149 -113 1891 139 24 3 chr9 120094792 120095101 -22176343 - AluSx SINE Alu 0 312 1 290 245 19 94 chr9 120095101 120095137 -22176307 + MIR SINE MIR 149 186 -76 21 0 0 0 chr9 120095197 120095218 -22176226 + AT_rich Low_complexity Low_complexity 1 21 0 266 224 65 56 chr9 120095776 120095883 -22175561 - L2 LINE L2 -3 3310 3203 790 277 146 34 chr9 120096288 120096645 -22174799 - MLT1J LTR MaLR -7 504 108 677 283 44 15 chr9 120097309 120097514 -22173930 + MIR SINE MIR 16 226 -36 194 337 206 0 chr9 120097507 120097599 -22173845 + L2 LINE L2 3144 3254 -18 * 189 154 103 0 chr9 120097569 120097608 -22173836 + MIR SINE MIR 217 259 -3 * 181 0 69 0 chr9 120097923 120097952 -22173492 + (TCTCCC)n Simple_repeat Simple_repeat 4 34 0 240 86 0 0 chr9 120098176 120098211 -22173233 + (A)n Simple_repeat Simple_repeat 1 35 0 274 254 73 57 chr9 120098636 120098813 -22172631 + MIR SINE MIR 33 212 -50 246 273 86 39 chr9 120099175 120099303 -22172141 - MIR3 SINE MIR -35 173 40 231 291 151 0 chr9 120099431 120099517 -22171927 - L2 LINE L2 -12 3301 3203 250 250 0 115 chr9 120099555 120099651 -22171793 + L2 LINE L2 3182 3266 -6 2202 161 3 20 chr9 120100107 120100448 -22170996 + MER1B DNA MER1_type 3 337 0 344 290 30 76 chr9 120100998 120101129 -22170315 + MIR3 SINE MIR 35 159 -49 671 265 10 29 chr9 120101132 120101336 -22170108 + Charlie8 DNA MER1_type 2 201 -2216 201 225 0 0 chr9 120101535 120101575 -22169869 + MIR3 SINE MIR 151 190 -18 237 320 6 64 chr9 120102522 120102678 -22168766 + L2 LINE L2 2716 2862 -452 2245 141 32 22 chr9 120102734 120103104 -22168340 + THE1C LTR MaLR 1 374 -1 463 286 62 109 chr9 120103137 120103476 -22167968 + L2 LINE L2 2939 3261 -11 24 0 0 0 chr9 120103592 120103616 -22167828 + AT_rich Low_complexity Low_complexity 1 24 0 285 340 57 17 chr9 120104810 120105036 -22166408 + MIR SINE MIR 18 254 -8 231 268 57 88 chr9 120105200 120105394 -22166050 - L2 LINE L2 -188 3084 2897 1261 174 14 14 chr9 120105445 120105664 -22165780 + MER20 DNA MER1_type 1 219 0 241 291 0 0 chr9 120106171 120106226 -22165218 - L2 LINE L2 -10 3262 3208 325 303 189 22 chr9 120106783 120106968 -22164476 + MIR SINE MIR 23 238 -24 190 258 54 65 chr9 120107010 120107103 -22164341 - MER5A DNA MER1_type -4 185 94 215 121 35 52 chr9 120107103 120107161 -22164283 + (CATTT)n Simple_repeat Simple_repeat 3 59 0 191 257 54 40 chr9 120107196 120107270 -22164174 + MIR3 SINE MIR 99 173 -35 244 306 0 0 chr9 120107329 120107391 -22164053 - MIR SINE MIR -90 172 111 1703 159 7 30 chr9 120107652 120107954 -22163490 + AluSx SINE Alu 1 295 -17 270 259 185 0 chr9 120107990 120108071 -22163373 - MIR SINE MIR -110 152 57 655 264 103 29 chr9 120109030 120109272 -22162172 - MIR SINE MIR -1 261 2 297 256 139 54 chr9 120109764 120109893 -22161551 + MIR SINE MIR 6 146 -62 195 282 77 51 chr9 120109917 120110034 -22161410 - L2 LINE L2 -4 3309 3190 189 147 0 0 chr9 120110221 120110255 -22161189 + (TG)n Simple_repeat Simple_repeat 1 34 0 216 301 18 30 chr9 120110255 120110421 -22161023 + GA-rich Low_complexity Low_complexity 2 165 0 202 266 0 16 chr9 120110979 120111043 -22160401 + CT-rich Low_complexity Low_complexity 2 64 0 605 290 91 13 chr9 120111224 120111455 -22159989 + MIR SINE MIR 13 261 -1 236 268 61 37 chr9 120111662 120111744 -22159700 + L3 LINE CR1 776 859 -718 290 283 66 66 chr9 120111811 120111963 -22159481 - MIR SINE MIR -82 180 29 185 140 43 43 chr9 120112360 120112453 -22158991 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 398 195 49 12 chr9 120112478 120112642 -22158802 + (TA)n Simple_repeat Simple_repeat 2 171 0 197 175 28 34 chr9 120112676 120112853 -22158591 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 220 344 43 55 chr9 120113780 120113943 -22157501 + L2 LINE L2 2955 3115 -157 379 259 42 54 chr9 120114537 120114703 -22156741 - MIR3 SINE MIR -15 193 30 701 227 98 45 chr9 120114736 120115022 -22156422 + MER113 DNA MER1_type? 8 308 -213 500 248 41 8 chr9 120115550 120115671 -22155773 - L2 LINE L2 0 3313 3189 229 294 130 14 chr9 120115740 120115886 -22155558 + MIR3 SINE MIR 31 193 -15 293 250 0 13 chr9 120116167 120116243 -22155201 - MIR SINE MIR -8 254 180 1097 225 67 97 chr9 120116253 120116470 -22154974 - LTR16C LTR ERVL 0 491 288 1628 179 43 7 chr9 120116470 120116771 -22154673 + AluJb SINE Alu 1 312 0 1097 225 67 97 chr9 120116771 120116926 -22154518 - LTR16C LTR ERVL -203 288 130 239 302 0 0 chr9 120117230 120117293 -22154151 + (TATG)n Simple_repeat Simple_repeat 2 64 0 184 209 47 0 chr9 120117354 120117397 -22154047 - MIR SINE MIR -62 146 102 798 190 78 0 chr9 120117404 120117546 -22153898 - MER45A DNA AcHobo 0 178 26 228 240 15 0 chr9 120117707 120117787 -22153657 + MIR SINE MIR 92 140 -68 278 217 339 9 chr9 120117949 120118064 -22153380 + MIR3 SINE MIR 34 186 -22 215 233 0 0 chr9 120118262 120118305 -22153139 + (CATA)n Simple_repeat Simple_repeat 2 44 0 208 347 0 10 chr9 120118651 120118749 -22152695 + CT-rich Low_complexity Low_complexity 1 97 0 216 252 45 54 chr9 120118932 120119043 -22152401 + MIR SINE MIR 68 145 -63 348 43 0 0 chr9 120119129 120119175 -22152269 + (ATTG)n Simple_repeat Simple_repeat 2 47 0 344 287 36 30 chr9 120120810 120120944 -22150500 - MIR SINE MIR -77 185 51 395 299 69 0 chr9 120120944 120121088 -22150356 + MIR3 SINE MIR 1 154 -54 275 238 30 50 chr9 120121578 120121679 -22149765 + MIR SINE MIR 164 262 0 300 286 41 0 chr9 120121684 120121782 -22149662 - L2 LINE L2 -23 3249 3148 345 291 71 7 chr9 120121795 120121936 -22149508 - MIR SINE MIR -111 151 2 280 282 127 0 chr9 120122146 120122256 -22149188 - MIR SINE MIR -56 152 29 194 396 10 0 chr9 120122916 120123017 -22148427 - L2 LINE L2 -30 3242 3141 1016 256 74 74 chr9 120123144 120123684 -22147760 - MLT1H LTR MaLR -5 544 5 195 339 68 25 chr9 120124335 120124453 -22146991 - L2 LINE L2 -231 3041 2919 288 287 8 62 chr9 120125011 120125140 -22146304 + MIR3 SINE MIR 81 202 -6 355 284 20 20 chr9 120125392 120125540 -22145904 - MIR SINE MIR -29 233 86 233 292 62 28 chr9 120125872 120126016 -22145428 + MIR SINE MIR 108 256 -6 337 365 0 0 chr9 120127145 120127260 -22144184 + L2 LINE L2 3149 3263 -9 186 167 0 0 chr9 120127575 120127611 -22143833 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 180 284 86 0 chr9 120128522 120128603 -22142841 - L2 LINE L2 -16 3256 3169 339 305 0 0 chr9 120128637 120128732 -22142712 + L1MC4 LINE L1 6609 6703 -1339 773 276 15 30 chr9 120128784 120129048 -22142396 - MIR SINE MIR 0 262 3 333 374 12 12 chr9 120129151 120129397 -22142047 - L2 LINE L2 -450 2864 2619 1256 311 48 32 chr9 120129399 120129894 -22141550 + LTR33 LTR ERVL 19 521 0 2540 80 0 6 chr9 120131063 120131397 -22140047 - AluSq SINE Alu 0 332 1 206 200 0 33 chr9 120131746 120131806 -22139638 + (TA)n Simple_repeat Simple_repeat 2 59 0 782 300 63 33 chr9 120131868 120132022 -22139422 - L2 LINE L2 0 3313 3165 2019 161 0 6 chr9 120132022 120132355 -22139089 - AluSx SINE Alu 0 312 1 782 300 63 33 chr9 120132355 120132660 -22138784 - L2 LINE L2 -148 3165 2840 225 269 154 88 chr9 120132914 120133094 -22138350 - MLT1J LTR MaLR -232 279 75 1624 143 52 80 chr9 120133094 120133480 -22137964 - THE1C LTR MaLR 0 375 1 225 269 154 88 chr9 120133480 120133559 -22137885 - MLT1J LTR MaLR -436 75 3 407 254 83 28 chr9 120133676 120133857 -22137587 + MIR SINE MIR 57 247 -15 306 248 93 0 chr9 120133945 120134087 -22137357 + MIR SINE MIR 32 191 -63 357 361 97 0 chr9 120134127 120134354 -22137090 + MIR SINE MIR 1 249 -13 231 114 0 0 chr9 120134367 120134402 -22137042 + (ATG)n Simple_repeat Simple_repeat 2 36 0 180 77 0 0 chr9 120134420 120134446 -22136998 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 255 308 15 0 chr9 120135256 120135321 -22136123 + Charlie8 DNA MER1_type 1 66 -2351 270 0 0 0 chr9 120135337 120135367 -22136077 + (A)n Simple_repeat Simple_repeat 1 30 0 427 290 10 0 chr9 120135462 120135562 -22135882 + Charlie8 DNA MER1_type 176 276 -2141 1974 141 42 30 chr9 120135622 120135956 -22135488 + MER1B DNA MER1_type 2 339 0 207 213 213 0 chr9 120136561 120136622 -22134822 + MIR3 SINE MIR 81 154 -54 237 320 0 0 chr9 120136809 120136887 -22134557 + L2 LINE L2 2811 2888 -384 193 250 0 0 chr9 120137059 120137099 -22134345 + MIR SINE MIR 50 89 -173 192 315 0 0 chr9 120137197 120137251 -22134193 + MIR SINE MIR 83 136 -126 284 204 19 0 chr9 120137271 120137325 -22134119 + Tigger5 DNA MER2_type 1 55 -2268 447 200 11 11 chr9 120137332 120137422 -22134022 + Tigger5 DNA MER2_type 2234 2323 0 246 326 42 0 chr9 120137423 120137518 -22133926 + MIR SINE MIR 154 252 -10 213 310 90 10 chr9 120138031 120138131 -22133313 + L2 LINE L2 3141 3248 -24 272 247 144 0 chr9 120138246 120138343 -22133101 + MIR SINE MIR 34 144 -64 209 325 113 12 chr9 120138544 120138704 -22132740 - MIR SINE MIR -26 236 61 372 295 9 9 chr9 120138876 120138988 -22132456 - MIR3 SINE MIR -11 197 86 2038 144 0 0 chr9 120139592 120139883 -22131561 + AluY SINE Alu 1 291 -20 338 328 0 35 chr9 120140067 120140144 -22131300 + MIR SINE MIR 88 166 -96 568 89 13 0 chr9 120140144 120140223 -22131221 - MADE1 DNA Mariner 0 80 1 338 328 0 35 chr9 120140223 120140319 -22131125 + MIR SINE MIR 166 255 -7 549 286 124 14 chr9 120140472 120140689 -22130755 - MIR SINE MIR -1 261 21 219 69 0 0 chr9 120140709 120140738 -22130706 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 207 250 177 31 chr9 120140738 120140834 -22130610 - L2 LINE L2 -22 3291 3182 192 250 0 0 chr9 120141416 120141472 -22129972 + MIR SINE MIR 99 154 -108 272 296 0 25 chr9 120141506 120141587 -22129857 - MER96B DNA MER1_type? -1 416 338 * 564 178 47 31 chr9 120141586 120141715 -22129729 - MER96B DNA MER1_type? -286 131 1 341 321 84 0 chr9 120141899 120142030 -22129414 + MIR SINE MIR 46 187 -75 2168 120 0 10 chr9 120142118 120142419 -22129025 - AluSq SINE Alu -15 298 1 277 311 38 0 chr9 120142556 120142662 -22128782 + MIR SINE MIR 41 150 -58 299 269 15 52 chr9 120143901 120144035 -22127409 - MIR SINE MIR -50 212 84 333 247 26 105 chr9 120144374 120144564 -22126880 + HAL1 LINE L1 1287 1461 -1046 201 305 9 19 chr9 120145112 120145217 -22126227 - MIR SINE MIR -42 220 117 230 333 0 26 chr9 120145588 120145705 -22125739 + CT-rich Low_complexity Low_complexity 4 117 0 254 300 165 12 chr9 120145839 120146009 -22125435 - MIR SINE MIR -65 197 2 186 385 34 0 chr9 120146175 120146292 -22125152 - MIR SINE MIR -89 173 53 1148 253 94 41 chr9 120146768 120147206 -22124238 + MLT1C LTR MaLR 7 467 0 830 178 33 124 chr9 120147268 120147509 -22123935 - AluJo SINE Alu -93 219 1 219 36 0 0 chr9 120148592 120148620 -22122824 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 626 313 42 8 chr9 120148746 120148986 -22122458 - MIR SINE MIR -6 256 9 456 321 64 23 chr9 120149343 120149561 -22121883 - MIR SINE MIR -3 259 33 375 23 0 0 chr9 120149637 120149681 -22121763 + (TA)n Simple_repeat Simple_repeat 1 44 0 746 82 0 0 chr9 120149681 120149779 -22121665 - AluSg1 SINE Alu -210 99 2 194 316 13 0 chr9 120150169 120150245 -22121199 - L2 LINE L2 -8 3264 3188 249 281 198 24 chr9 120150338 120150505 -22120939 - L2 LINE L2 -184 3088 2893 203 324 15 0 chr9 120150625 120150693 -22120751 - MIR3 SINE MIR -14 194 126 227 286 122 10 chr9 120150896 120150994 -22120450 - MIR SINE MIR -72 190 82 1168 167 44 0 chr9 120151876 120152080 -22119364 - MER20 DNA MER1_type -1 218 6 188 255 0 0 chr9 120153390 120153441 -22118003 + MIR SINE MIR 85 135 -73 1829 214 54 5 chr9 120154481 120154873 -22116571 - MLT1C LTR MaLR -4 463 53 268 344 85 5 chr9 120156329 120156518 -22114926 - MIR SINE MIR -24 238 35 207 114 0 0 chr9 120157498 120157533 -22113911 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 361 332 45 30 chr9 120157591 120157790 -22113654 - MIR SINE MIR -27 235 34 311 256 48 65 chr9 120158290 120158458 -22112986 + MIR SINE MIR 43 207 -55 186 187 0 40 chr9 120158512 120158587 -22112857 + CT-rich Low_complexity Low_complexity 4 75 0 234 136 0 0 chr9 120158777 120158821 -22112623 + (CA)n Simple_repeat Simple_repeat 2 45 0 194 91 30 0 chr9 120159826 120159859 -22111585 + (TA)n Simple_repeat Simple_repeat 2 35 0 220 196 0 0 chr9 120159909 120159955 -22111489 - L2 LINE L2 0 3313 3268 614 157 36 24 chr9 120160246 120160412 -22111032 + Tigger3(Golem) DNA MER2_type 2457 2624 -405 293 303 0 0 chr9 120161226 120161325 -22110119 + MIR SINE MIR 41 139 -69 219 301 171 0 chr9 120161538 120161661 -22109783 + MIR SINE MIR 45 188 -74 490 318 98 24 chr9 120161695 120162405 -22109039 + L2 LINE L2 2546 3300 -13 200 35 35 0 chr9 120162405 120162434 -22109010 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 789 282 23 9 chr9 120163407 120163627 -22107817 - MER58A DNA MER1_type -1 223 1 2687 119 2 0 chr9 120163757 120164159 -22107285 + L1PB1 LINE L1 5746 6148 -3 375 258 39 8 chr9 120164379 120164507 -22106937 + MIR3 SINE MIR 15 146 -62 203 309 48 24 chr9 120165574 120165658 -22105786 - MIR3 SINE MIR -36 172 87 467 184 26 53 chr9 120165675 120165789 -22105655 + L1MC4 LINE L1 7922 8032 -10 405 250 15 83 chr9 120165837 120166041 -22105403 + MIR SINE MIR 33 222 -40 1869 162 23 10 chr9 120166167 120166505 -22104939 + AluJb SINE Alu 1 312 0 2276 101 0 10 chr9 120167096 120167402 -22104042 - AluSc SINE Alu -6 303 1 204 286 143 0 chr9 120167403 120167487 -22103957 + MIR SINE MIR 45 140 -68 320 322 104 5 chr9 120167606 120167808 -22103636 - MIR SINE MIR -14 248 27 265 260 13 0 chr9 120167812 120167889 -22103555 + MIR SINE MIR 170 247 -15 775 261 0 37 chr9 120168175 120168393 -22103051 - MER63A DNA MER1_type 0 210 1 181 349 125 20 chr9 120169088 120169240 -22102204 - MIR SINE MIR -69 193 26 330 273 99 0 chr9 120170234 120170355 -22101089 + MIR SINE MIR 57 189 -73 1868 121 8 4 chr9 120170867 120171131 -22100313 - AluSx SINE Alu -3 309 45 317 311 19 0 chr9 120171163 120171269 -22100175 - L2 LINE L2 -594 2720 2613 2195 199 70 70 chr9 120171606 120172259 -22099185 - MLT1E1 LTR MaLR 0 654 2 356 284 0 0 chr9 120173267 120173362 -22098082 + L1ME LINE L1 5691 5785 -336 240 306 40 29 chr9 120173731 120173904 -22097540 + MIR SINE MIR 77 251 -11 288 295 62 27 chr9 120174253 120174365 -22097079 - MER5B DNA MER1_type -3 175 60 1641 193 0 0 chr9 120174410 120174690 -22096754 - AluJb SINE Alu -32 280 1 2198 119 3 3 chr9 120174728 120175039 -22096405 + AluSx SINE Alu 1 311 -1 307 300 11 0 chr9 120175505 120175595 -22095849 + MIR3 SINE MIR 104 194 -14 * 333 351 55 49 chr9 120175594 120175959 -22095485 + L3 LINE CR1 1196 1562 -15 2026 155 0 0 chr9 120175988 120176298 -22095146 - AluSx SINE Alu -2 310 1 327 318 23 45 chr9 120176354 120176530 -22094914 - MIR SINE MIR -70 192 21 462 305 71 18 chr9 120177063 120177289 -22094155 + L2 LINE L2 2555 2792 -522 228 277 0 0 chr9 120177330 120177377 -22094067 + polypyrimidine Low_complexity Low_complexity 2 48 0 198 250 0 18 chr9 120177377 120177433 -22094011 - L2 LINE L2 -1 3312 3258 291 298 78 74 chr9 120177448 120177757 -22093687 + L2 LINE L2 2941 3250 -22 400 283 116 23 chr9 120177857 120178030 -22093414 - MIR SINE MIR -56 206 18 202 406 0 0 chr9 120178040 120178109 -22093335 - MIR SINE MIR -109 99 31 231 114 0 0 chr9 120178242 120178277 -22093167 + (CCCCCT)n Simple_repeat Simple_repeat 5 39 0 386 324 56 7 chr9 120178768 120178910 -22092534 + MIR SINE MIR 4 152 -110 199 188 14 29 chr9 120178936 120179005 -22092439 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 180 0 0 0 chr9 120179495 120179515 -22091929 + (TCC)n Simple_repeat Simple_repeat 2 21 0 232 354 55 24 chr9 120180097 120180224 -22091220 - L2 LINE L2 -1 3271 3141 183 245 181 53 chr9 120180918 120181012 -22090432 + MIR SINE MIR 23 128 -80 183 42 0 0 chr9 120181021 120181045 -22090399 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 222 253 111 30 chr9 120181615 120181714 -22089730 + MIR SINE MIR 4 110 -152 43847 32 23 1 chr9 120181727 120187746 -22083698 + L1PA2 LINE L1 1 6155 0 296 181 42 14 chr9 120188914 120188986 -22082458 + MIR3 SINE MIR 81 154 -54 216 0 0 0 chr9 120191107 120191131 -22080313 + (T)n Simple_repeat Simple_repeat 1 24 0 380 327 99 5 chr9 120191308 120191519 -22079925 - MIR SINE MIR 0 262 32 320 281 158 14 chr9 120191957 120192096 -22079348 + MIR3 SINE MIR 39 197 -11 721 179 0 0 chr9 120192810 120192933 -22078511 + FRAM SINE Alu 33 155 -21 199 327 37 9 chr9 120193051 120193158 -22078286 + L3 LINE CR1 1393 1502 -75 935 256 55 74 chr9 120194298 120194920 -22076524 + L2 LINE L2 2576 3191 -122 392 0 21 0 chr9 120194920 120194968 -22076476 + (CA)n Simple_repeat Simple_repeat 2 50 0 935 256 55 74 chr9 120194968 120195069 -22076375 + L2 LINE L2 3191 3292 -21 282 316 28 38 chr9 120195347 120195559 -22075885 - L2 LINE L2 -556 2758 2549 231 303 30 0 chr9 120196380 120196446 -22074998 + MIR3 SINE MIR 94 161 -47 335 265 26 8 chr9 120198006 120198123 -22073321 - L2 LINE L2 -9 3304 3186 624 245 74 23 chr9 120198144 120198360 -22073084 - MIR SINE MIR 0 262 36 257 245 97 39 chr9 120198381 120198536 -22072908 - L2 LINE L2 -136 3177 3014 583 163 0 0 chr9 120199538 120199624 -22071820 + MLT1F1 LTR MaLR 37 122 -445 1523 214 63 6 chr9 120199627 120199734 -22071710 + L1MD3 LINE L1 7404 7503 -492 183 80 0 0 chr9 120199734 120199759 -22071685 + (ATATG)n Simple_repeat Simple_repeat 3 27 0 1523 214 63 6 chr9 120199759 120200118 -22071326 + L1MD3 LINE L1 7503 7987 -8 2102 138 0 16 chr9 120200209 120200521 -22070923 + AluSx SINE Alu 6 312 0 181 317 63 88 chr9 120202545 120202678 -22068766 - MIR SINE MIR -43 219 91 2275 196 11 11 chr9 120202678 120203137 -22068307 + L1MB4 LINE L1 5722 6180 0 181 317 63 88 chr9 120203137 120203208 -22068236 - MIR SINE MIR -171 91 20 1037 163 0 26 chr9 120203245 120203435 -22068009 + MER3 DNA MER1_type 1 185 -24 2321 176 34 36 chr9 120203701 120204179 -22067265 + L1MC1 LINE L1 5857 6333 0 240 328 63 32 chr9 120205940 120206129 -22065315 - MIR SINE MIR -32 230 36 2193 119 3 3 chr9 120206718 120207020 -22064424 + AluSx SINE Alu 1 302 -10 701 208 81 65 chr9 120207042 120207302 -22064142 - ORSL DNA AcHobo 0 275 12 207 310 43 17 chr9 120207812 120207928 -22063516 + MIR SINE MIR 23 141 -67 283 256 99 33 chr9 120208806 120208927 -22062517 + MIR SINE MIR 59 187 -75 190 308 75 19 chr9 120209405 120209512 -22061932 + MIR SINE MIR 34 146 -116 303 301 58 70 chr9 120209799 120209955 -22061489 - L2 LINE L2 0 3272 3119 245 290 56 37 chr9 120210147 120210254 -22061190 - L2 LINE L2 -58 3255 3147 394 293 8 23 chr9 120210334 120210467 -22060977 + MIR3 SINE MIR 32 162 -46 348 240 24 53 chr9 120211010 120211153 -22060291 + MIR SINE MIR 46 188 -62 345 333 142 18 chr9 120211339 120211564 -22059880 + MIR SINE MIR 5 257 -5 1972 158 3 3 chr9 120211612 120211922 -22059522 - AluSq SINE Alu -3 310 1 441 323 45 27 chr9 120211953 120212173 -22059271 + LTR33 LTR ERVL 3 226 -295 383 218 97 103 chr9 120212263 120212283 -22059161 + LTR33 LTR ERVL 355 374 -147 1625 211 31 40 chr9 120212283 120212705 -22058739 + LTR52 LTR ERVL 1 418 -3 383 218 97 103 chr9 120212705 120212849 -22058595 + LTR33 LTR ERVL 374 518 -3 309 328 64 0 chr9 120212975 120213100 -22058344 - MIR SINE MIR -50 212 80 21 0 0 0 chr9 120213470 120213491 -22057953 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 120213606 120213631 -22057813 + AT_rich Low_complexity Low_complexity 1 25 0 188 204 56 37 chr9 120213789 120213843 -22057601 + L2 LINE L2 3214 3268 -4 26 30 0 0 chr9 120213968 120214001 -22057443 + AT_rich Low_complexity Low_complexity 1 33 0 347 293 7 44 chr9 120214034 120214228 -22057216 - MIR SINE MIR -56 206 21 2180 135 0 0 chr9 120214467 120214764 -22056680 - AluSg SINE Alu -13 297 1 361 316 45 29 chr9 120215017 120215261 -22056183 + MIR SINE MIR 3 250 -12 251 220 40 50 chr9 120215267 120215367 -22056077 + L2 LINE L2 3172 3270 -43 425 272 75 23 chr9 120217089 120217262 -22054182 - MIR SINE MIR 0 262 81 374 303 29 57 chr9 120217309 120217484 -22053960 + L2 LINE L2 3144 3313 0 436 274 49 37 chr9 120218273 120218437 -22053007 - MIR SINE MIR -50 212 47 808 195 6 24 chr9 120218464 120218628 -22052816 - FRAM SINE Alu -15 161 1 827 258 79 4 chr9 120219261 120219490 -22051954 + MIR SINE MIR 17 262 0 247 286 98 45 chr9 120219557 120219690 -22051754 - MIR3 SINE MIR -52 156 17 691 278 15 34 chr9 120220228 120220433 -22051011 + MIR SINE MIR 50 250 -12 218 196 22 0 chr9 120220400 120220446 -22050998 + L2 LINE L2 3222 3268 -4 * 25 31 0 0 chr9 120220452 120220484 -22050960 + AT_rich Low_complexity Low_complexity 1 32 0 390 301 7 37 chr9 120220639 120220775 -22050669 + MIR SINE MIR 19 150 -112 201 376 40 40 chr9 120221607 120221708 -22049736 + L3 LINE CR1 38 138 -1439 245 306 96 6 chr9 120221853 120222010 -22049434 - MIR SINE MIR -56 206 36 216 0 0 0 chr9 120222124 120222148 -22049296 + (A)n Simple_repeat Simple_repeat 1 24 0 186 252 87 87 chr9 120222839 120222966 -22048478 - L2 LINE L2 -3 3269 3143 304 288 144 18 chr9 120223219 120223441 -22048003 - MIR SINE MIR 0 262 13 2501 190 59 2 chr9 120223452 120223930 -22047514 - MLT1D LTR MaLR 0 505 1 269 370 50 8 chr9 120223973 120224092 -22047352 - MIR SINE MIR -118 144 21 272 338 111 14 chr9 120224384 120224591 -22046853 + MIR SINE MIR 36 262 0 380 259 209 20 chr9 120225270 120225396 -22046048 + L1ME4a LINE L1 5542 5643 -478 188 35 35 0 chr9 120225396 120225425 -22046019 + (TA)n Simple_repeat Simple_repeat 1 30 0 380 259 209 20 chr9 120225425 120225595 -22045849 + L1ME4a LINE L1 5643 5894 -227 236 287 139 0 chr9 120225935 120226036 -22045408 - MIR SINE MIR -64 144 30 269 310 10 10 chr9 120226162 120226262 -22045182 + MIR SINE MIR 52 151 -111 2508 159 39 10 chr9 120226532 120226947 -22044497 + MSTA LTR MaLR 2 428 0 253 313 71 27 chr9 120227340 120227452 -22043992 - L2 LINE L2 -12 3260 3144 1207 88 0 0 chr9 120228079 120228226 -22043218 + AluSc SINE Alu 1 147 -162 3785 147 77 12 chr9 120228432 120229032 -22042412 + L1MB7 LINE L1 5436 6088 -96 2605 132 27 52 chr9 120229032 120229471 -22041973 + MSTA LTR MaLR 1 428 0 3785 147 77 12 chr9 120229471 120229558 -22041886 + L1MB7 LINE L1 6088 6168 -16 248 320 202 26 chr9 120229574 120229955 -22041489 - L2 LINE L2 -264 3008 2560 591 304 77 1 chr9 120230074 120230297 -22041147 - MIR SINE MIR -11 251 15 471 360 5 5 chr9 120230318 120230515 -22040929 + MER117 DNA MER1_type 1 197 0 299 229 72 0 chr9 120230577 120230660 -22040784 + L1ME2 LINE L1 5824 5912 -252 1802 186 21 3 chr9 120230666 120230993 -22040451 - MER58B DNA MER1_type -8 333 1 844 235 122 0 chr9 120230993 120231223 -22040221 + L1ME2 LINE L1 5905 6162 -2 228 343 123 55 chr9 120232121 120232267 -22039177 + MIR3 SINE MIR 38 193 -15 378 333 42 7 chr9 120232272 120232416 -22039028 + MIR3 SINE MIR 55 203 -5 206 206 16 0 chr9 120232526 120232589 -22038855 + (TGGA)n Simple_repeat Simple_repeat 4 67 0 541 191 0 0 chr9 120232920 120233004 -22038440 - AluJ/FLAM SINE Alu -227 85 2 23 0 0 0 chr9 120233071 120233094 -22038350 + AT_rich Low_complexity Low_complexity 1 23 0 320 348 15 0 chr9 120233415 120233550 -22037894 + GA-rich Low_complexity Low_complexity 1 137 0 240 242 0 0 chr9 120234683 120234745 -22036699 + MIR SINE MIR 62 123 -85 296 295 0 32 chr9 120234832 120234927 -22036517 + L2 LINE L2 3173 3264 -8 529 314 24 47 chr9 120235048 120235303 -22036141 - L2 LINE L2 -212 3060 2812 3152 72 0 8 chr9 120237375 120237775 -22033669 - THE1-int LTR MaLR 0 1580 1184 512 298 66 72 chr9 120237775 120238094 -22033350 - L2 LINE L2 -541 2773 2457 263 321 11 18 chr9 120239065 120239288 -22032156 + GA-rich Low_complexity Low_complexity 1 221 0 524 249 66 46 chr9 120239983 120240180 -22031264 + MER3 DNA MER1_type 1 201 -8 244 332 89 31 chr9 120240371 120240615 -22030829 - L2 LINE L2 -323 2990 2738 210 224 145 26 chr9 120241677 120241798 -22029646 + MIR SINE MIR 35 171 -91 211 233 67 22 chr9 120241886 120241976 -22029468 + MIR3 SINE MIR 111 204 -4 1270 35 25 124 chr9 120242253 120242308 -22029136 - L1MA1 LINE L1 0 6302 6243 2099 142 0 0 chr9 120242308 120242610 -22028834 - AluSx SINE Alu -10 302 1 1270 35 25 124 chr9 120242610 120242686 -22028758 - L1MA1 LINE L1 -59 6243 6195 1591 132 120 8 chr9 120242686 120242952 -22028492 - AluSg1 SINE Alu -13 296 1 1270 35 25 124 chr9 120242952 120243021 -22028423 - L1MA1 LINE L1 -107 6195 6121 314 276 20 0 chr9 120243760 120243858 -22027586 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 183 161 0 0 chr9 120244322 120244353 -22027091 + MIR SINE MIR 87 117 -91 2159 100 0 17 chr9 120244536 120244826 -22026618 - AluSc SINE Alu -24 285 1 26 0 0 0 chr9 120245106 120245132 -22026312 + AT_rich Low_complexity Low_complexity 1 26 0 385 206 0 22 chr9 120245274 120245366 -22026078 - MER113 DNA MER1_type? -306 215 126 267 240 0 0 chr9 120245640 120245690 -22025754 + MER117 DNA MER1_type 122 171 -26 411 295 0 9 chr9 120245719 120245831 -22025613 - L2 LINE L2 0 3313 3203 281 283 40 24 chr9 120245899 120245991 -22025453 - MIR SINE MIR -84 124 29 391 313 153 0 chr9 120246500 120246650 -22024794 - MIR3 SINE MIR -33 175 3 195 245 0 153 chr9 120246795 120246893 -22024551 - MIR SINE MIR -21 241 159 278 297 222 28 chr9 120246940 120247152 -22024292 - L2 LINE L2 -3 3269 3017 511 298 53 11 chr9 120247154 120247342 -22024102 - L2 LINE L2 -446 2868 2673 1399 195 4 8 chr9 120247342 120247598 -22023846 - MER58B DNA MER1_type 0 341 87 204 40 0 0 chr9 120247618 120247643 -22023801 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 496 266 145 35 chr9 120247685 120247805 -22023639 - L2 LINE L2 -640 2674 2569 1783 157 13 0 chr9 120247805 120248104 -22023340 - AluSx SINE Alu -9 303 1 496 266 145 35 chr9 120248104 120248265 -22023179 - L2 LINE L2 -745 2569 2362 922 170 27 21 chr9 120248317 120248505 -22022939 - MER53 DNA DNA 0 189 1 240 300 0 0 chr9 120250123 120250203 -22021241 + (TTCA)n Simple_repeat Simple_repeat 2 81 0 313 250 0 29 chr9 120250259 120250363 -22021081 + (TTCA)n Simple_repeat Simple_repeat 1 101 0 251 360 81 26 chr9 120250723 120250995 -22020449 - L2 LINE L2 -404 2910 2624 1960 116 60 0 chr9 120251124 120251409 -22020035 - AluSx SINE Alu -10 302 1 190 287 213 0 chr9 120253044 120253138 -22018306 + MIR SINE MIR 80 193 -69 542 235 118 0 chr9 120253153 120253272 -22018172 - MER94 DNA DNA -1 133 1 693 268 148 0 chr9 120253933 120254142 -22017302 + MIR SINE MIR 2 241 -21 241 192 58 0 chr9 120254231 120254283 -22017161 - MIR3 SINE MIR -1 207 153 665 326 25 17 chr9 120254381 120254620 -22016824 + MIR SINE MIR 7 247 -15 244 167 233 33 chr9 120255424 120255484 -22015960 - MIR3 SINE MIR -51 157 86 584 318 33 9 chr9 120255575 120255786 -22015658 - MIR SINE MIR -36 226 11 2079 141 0 3 chr9 120255879 120256177 -22015267 - AluSx SINE Alu -15 297 1 232 295 16 16 chr9 120256501 120256562 -22014882 + MIR SINE MIR 79 139 -69 661 269 88 0 chr9 120256736 120256907 -22014537 - MER20 DNA MER1_type -9 210 25 245 324 45 0 chr9 120256920 120257031 -22014413 + MIR SINE MIR 36 151 -57 246 135 0 0 chr9 120257377 120257414 -22014030 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 288 53 0 0 chr9 120257415 120257453 -22013991 + (GA)n Simple_repeat Simple_repeat 1 38 0 333 109 0 0 chr9 120257531 120257586 -22013858 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 278 125 0 0 chr9 120257595 120257635 -22013809 + MLT2C2 LTR ERVL 423 462 -2 346 263 44 66 chr9 120258481 120258618 -22012826 + MIR3 SINE MIR 41 174 -34 225 364 33 38 chr9 120260215 120260399 -22011045 - L2 LINE L2 -454 2860 2678 338 213 9 102 chr9 120261294 120261402 -22010042 + MIR SINE MIR 115 212 -50 * 649 304 95 23 chr9 120261386 120261692 -22009752 + L2 LINE L2 2956 3283 -30 490 264 16 0 chr9 120262053 120262174 -22009270 - MIR SINE MIR -27 235 113 2135 136 0 0 chr9 120262566 120262867 -22008577 - AluSx SINE Alu -11 301 1 437 267 74 74 chr9 120263971 120264256 -22007188 + L2 LINE L2 2863 3147 -125 256 155 14 84 chr9 120264293 120264364 -22007080 - MIR3 SINE MIR -135 73 8 2000 112 0 87 chr9 120264734 120265057 -22006387 + AluSx SINE Alu 1 295 -17 2025 152 58 19 chr9 120265141 120265502 -22005942 + THE1C LTR MaLR 1 375 0 216 308 0 0 chr9 120265760 120265812 -22005632 - MIR SINE MIR -69 139 88 448 308 8 0 chr9 120265870 120266003 -22005441 + MIR SINE MIR 64 197 -65 215 233 133 33 chr9 120266100 120266190 -22005254 + MIR3 SINE MIR 67 165 -43 * 454 284 88 0 chr9 120266183 120266331 -22005113 + MIR SINE MIR 85 245 -17 743 12 47 0 chr9 120266793 120266879 -22004565 + L1P1 LINE L1 5563 5652 -503 1756 49 0 0 chr9 120266979 120267183 -22004261 + L1PA4 LINE L1 5951 6154 -1 470 357 65 15 chr9 120267725 120267988 -22003456 - L3 LINE CR1 -3 1574 1299 327 351 60 15 chr9 120269249 120269383 -22002061 - MIR3 SINE MIR -60 148 9 245 240 0 0 chr9 120269431 120269481 -22001963 + (ATGGTG)n Simple_repeat Simple_repeat 3 52 0 1739 191 32 17 chr9 120269778 120270198 -22001246 + MLT2B1 LTR ERVL 3 478 -42 249 33 0 0 chr9 120270198 120270228 -22001216 + (TCCA)n Simple_repeat Simple_repeat 2 31 0 209 98 24 0 chr9 120270248 120270289 -22001155 + (TC)n Simple_repeat Simple_repeat 1 42 0 1734 120 77 7 chr9 120270289 120270563 -22000881 - AluSx SINE Alu -11 301 9 327 124 0 35 chr9 120270563 120270631 -22000813 + MLT2B1 LTR ERVL 389 520 0 196 350 106 31 chr9 120270866 120271186 -22000258 - L2 LINE L2 -1357 1957 1614 223 227 0 23 chr9 120271335 120271379 -22000065 + MIR SINE MIR 43 85 -123 536 311 55 58 chr9 120271622 120272317 -21999127 + L1MC4a LINE L1 5255 5947 -1861 278 246 0 16 chr9 120272689 120272750 -21998694 + CT-rich Low_complexity Low_complexity 1 60 0 182 262 66 16 chr9 120272770 120272831 -21998613 - L2 LINE L2 -62 3251 3188 212 250 0 0 chr9 120273933 120273981 -21997463 + L2 LINE L2 3211 3258 -14 220 307 27 0 chr9 120274254 120274329 -21997115 - MIR SINE MIR -112 150 74 1500 233 41 60 chr9 120274569 120275033 -21996411 - MLT1C LTR MaLR -3 464 10 956 255 17 8 chr9 120275067 120275306 -21996138 + MIR SINE MIR 4 244 -18 560 312 34 30 chr9 120275324 120275558 -21995886 + MIR SINE MIR 9 243 -19 311 341 151 6 chr9 120276296 120276475 -21994969 + MIR SINE MIR 2 206 -56 * 479 280 107 100 chr9 120276471 120276760 -21994684 + L2 LINE L2 2981 3271 -1 1300 47 6 53 chr9 120276793 120276964 -21994480 + AluY SINE Alu 1 163 -148 507 237 98 55 chr9 120277123 120277331 -21994113 - MIR SINE MIR -31 231 13 220 301 266 7 chr9 120277825 120277968 -21993476 - MIR SINE MIR -52 210 31 7472 179 49 52 chr9 120279227 120279388 -21992056 - L1MC3 LINE L1 -8 7777 7617 360 0 0 0 chr9 120279388 120279428 -21992016 + (CA)n Simple_repeat Simple_repeat 2 41 0 7472 179 49 52 chr9 120279428 120280944 -21990500 - L1MC3 LINE L1 -168 7617 6106 1358 254 47 82 chr9 120281105 120281677 -21989767 - L1MCb LINE L1 -5493 552 1 1263 295 124 8 chr9 120282366 120282840 -21988604 - MLT1H LTR MaLR -6 543 15 1904 114 13 67 chr9 120282879 120283199 -21988245 + AluSx SINE Alu 1 304 0 208 261 45 23 chr9 120284317 120284405 -21987039 - MIR SINE MIR -75 187 98 483 287 60 30 chr9 120284825 120284992 -21986452 + MER5A DNA MER1_type 7 178 -11 1900 132 3 33 chr9 120285429 120285733 -21985711 - AluSc SINE Alu -14 295 1 1510 153 55 18 chr9 120286111 120286386 -21985058 + AluJb SINE Alu 13 297 -15 3761 165 69 8 chr9 120287185 120287896 -21983548 + L1MB4 LINE L1 5408 6161 -19 25 75 0 0 chr9 120287901 120287954 -21983490 + AT_rich Low_complexity Low_complexity 1 53 0 441 348 71 9 chr9 120290170 120290380 -21981064 + MIR SINE MIR 23 245 -17 268 227 100 0 chr9 120291154 120291247 -21980197 + MIR SINE MIR 51 150 -62 386 274 196 23 chr9 120291439 120291658 -21979786 + MIR SINE MIR 4 260 -2 364 231 0 104 chr9 120291968 120292102 -21979342 - MIR3 SINE MIR -30 178 59 324 315 21 14 chr9 120292338 120292481 -21978963 + GA-rich Low_complexity Low_complexity 1 144 0 331 282 61 30 chr9 120292499 120292630 -21978814 - MIR SINE MIR -32 230 96 245 196 0 20 chr9 120292796 120292847 -21978597 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 2234 109 0 0 chr9 120293099 120293393 -21978051 - AluSg SINE Alu -16 294 1 206 200 0 33 chr9 120293742 120293802 -21977642 + (TA)n Simple_repeat Simple_repeat 2 59 0 928 298 63 33 chr9 120293864 120294018 -21977426 - L2 LINE L2 0 3313 3165 2001 161 0 6 chr9 120294018 120294351 -21977093 - AluSx SINE Alu 0 312 1 928 298 63 33 chr9 120294351 120294656 -21976788 - L2 LINE L2 -148 3165 2840 289 282 81 24 chr9 120294753 120294877 -21976567 + L2 LINE L2 3182 3312 -1 209 83 28 0 chr9 120294879 120294915 -21976529 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 257 228 171 32 chr9 120295186 120295309 -21976135 + MIR3 SINE MIR 10 149 -59 881 267 79 13 chr9 120295960 120296275 -21975169 - L2 LINE L2 -532 2782 2447 210 37 0 0 chr9 120296665 120296692 -21974752 + (TG)n Simple_repeat Simple_repeat 1 27 0 265 270 216 0 chr9 120297647 120297758 -21973686 + MIR SINE MIR 49 183 -79 325 303 30 61 chr9 120298580 120298712 -21972732 - MIR SINE MIR -112 150 23 290 212 85 0 chr9 120299213 120299293 -21972151 - MIR SINE MIR -70 138 64 185 257 284 9 chr9 120300327 120300436 -21971008 + MIR SINE MIR 23 161 -101 249 293 69 49 chr9 120300523 120300682 -21970762 - MIR3 SINE MIR -58 150 9 234 289 29 67 chr9 120300738 120300842 -21970602 - MIR SINE MIR -116 146 47 341 269 40 71 chr9 120301299 120301485 -21969959 + MIR3 SINE MIR 2 183 -67 515 313 75 50 chr9 120301701 120301941 -21969503 - MIR SINE MIR -1 261 16 220 229 281 0 chr9 120302069 120302165 -21969279 + MIR SINE MIR 29 151 -111 509 351 41 12 chr9 120302237 120302479 -21968965 - MIR SINE MIR 0 262 14 180 333 0 0 chr9 120302485 120302539 -21968905 + MIR SINE MIR 209 262 0 292 136 0 0 chr9 120302896 120302940 -21968504 - AluY SINE Alu -208 93 50 697 95 11 0 chr9 120302945 120303040 -21968404 + AluY SINE Alu 206 301 -10 199 319 195 49 chr9 120303451 120303799 -21967645 + L3 LINE CR1 1178 1576 -1 204 125 42 21 chr9 120303979 120304027 -21967417 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 356 304 131 23 chr9 120304126 120304340 -21967104 + L3 LINE CR1 926 1162 -415 330 271 84 9 chr9 120304381 120304488 -21966956 - MIR SINE MIR -52 210 96 239 325 0 0 chr9 120304600 120304683 -21966761 + MIR SINE MIR 169 251 -11 1488 231 136 24 chr9 120304704 120304988 -21966456 - MLT1C LTR MaLR 0 467 120 1477 181 4 4 chr9 120304988 120305248 -21966196 + AluSx SINE Alu 1 260 -52 1488 231 136 24 chr9 120305248 120305383 -21966061 - MLT1C LTR MaLR -347 120 1 304 54 0 0 chr9 120305391 120305428 -21966016 + MADE1 DNA Mariner 1 37 -43 210 301 237 13 chr9 120305830 120305986 -21965458 - MIR SINE MIR -21 241 51 223 284 75 0 chr9 120306706 120306773 -21964671 + MIR SINE MIR 44 115 -93 626 332 62 9 chr9 120306861 120307087 -21964357 + MIR SINE MIR 2 239 -23 275 347 35 80 chr9 120307124 120307323 -21964121 - L2 LINE L2 -129 3143 2954 224 272 66 33 chr9 120307356 120307493 -21963951 + L2 LINE L2 2865 3009 -263 322 365 46 50 chr9 120308546 120308787 -21962657 - L2 LINE L2 -213 3059 2820 3004 212 7 7 chr9 120310477 120311019 -21960425 - MLT1F LTR MaLR 0 542 1 234 318 41 59 chr9 120311039 120311209 -21960235 - L3b LINE CR1 -131 1452 1286 391 224 58 96 chr9 120311799 120311955 -21959489 + MIR SINE MIR 64 213 -49 378 301 110 17 chr9 120312656 120312829 -21958615 + MIR SINE MIR 12 200 -62 404 286 33 42 chr9 120314628 120314815 -21956629 + MIR SINE MIR 13 192 -70 333 316 60 8 chr9 120315461 120315594 -21955850 - L2 LINE L2 -10 3303 3164 467 333 90 54 chr9 120316176 120316601 -21954843 + L2 LINE L2 2716 3166 -106 1268 165 33 5 chr9 120316601 120316813 -21954631 - MER20 DNA MER1_type -1 218 1 467 333 90 54 chr9 120316813 120316924 -21954520 + L2 LINE L2 3166 3272 0 1608 213 49 39 chr9 120317759 120318148 -21953296 - MSTD LTR MaLR -3 393 1 400 281 14 43 chr9 120318363 120318502 -21952942 + L2 LINE L2 3175 3309 -4 879 275 156 29 chr9 120318566 120318984 -21952460 + MLT1J LTR MaLR 41 511 0 768 302 24 8 chr9 120319402 120319654 -21951790 + MIR SINE MIR 3 258 -4 602 191 164 7 chr9 120320292 120320444 -21951000 + MLT1B LTR MaLR 1 176 -214 222 205 36 0 chr9 120320454 120320537 -21950907 + CT-rich Low_complexity Low_complexity 1 86 0 1029 182 37 0 chr9 120320562 120320749 -21950695 + MLT1B LTR MaLR 197 390 0 867 281 141 34 chr9 120321862 120322339 -21949105 - MLT1H LTR MaLR 0 549 22 767 328 20 4 chr9 120322653 120322897 -21948547 + MIR SINE MIR 3 250 -12 237 65 0 0 chr9 120322898 120322929 -21948515 + (TTA)n Simple_repeat Simple_repeat 2 32 0 257 320 13 0 chr9 120324031 120324109 -21947335 + L2 LINE L2 3226 3304 -9 211 194 0 0 chr9 120324163 120324199 -21947245 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 213 250 0 88 chr9 120324693 120324773 -21946671 + L2 LINE L2 3155 3227 -45 540 292 0 8 chr9 120325668 120325798 -21945646 - L2 LINE L2 -1 3312 3184 465 295 30 18 chr9 120325965 120326131 -21945313 + MIR SINE MIR 75 242 -20 236 324 0 14 chr9 120326222 120326293 -21945151 - L2 LINE L2 -189 3083 3014 270 279 221 17 chr9 120326305 120326477 -21944967 - MIR SINE MIR -10 252 46 725 305 69 16 chr9 120326549 120326795 -21944649 - MIR SINE MIR -1 261 3 203 337 54 66 chr9 120326815 120327011 -21944433 + MIR SINE MIR 19 211 -51 269 353 123 41 chr9 120327111 120327380 -21944064 + L3 LINE CR1 1227 1517 -60 606 308 67 48 chr9 120327383 120328037 -21943407 + L2 LINE L2 2601 3261 -52 457 254 46 8 chr9 120328599 120328729 -21942715 - MIR SINE MIR -98 164 30 229 293 0 17 chr9 120328838 120328896 -21942548 - MIR SINE MIR -165 97 41 225 389 0 0 chr9 120329191 120329263 -21942181 - L2 LINE L2 -67 3205 3134 192 326 124 8 chr9 120329406 120329535 -21941909 + MIR SINE MIR 109 252 -10 * 205 265 20 0 chr9 120329501 120329550 -21941894 + L2 LINE L2 3223 3272 0 2152 119 6 13 chr9 120330564 120330876 -21940568 - AluSx SINE Alu -2 310 1 291 262 34 37 chr9 120330908 120331035 -21940409 - MIR SINE MIR -46 162 40 239 120 0 40 chr9 120331545 120331595 -21939849 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 472 356 50 44 chr9 120331717 120332212 -21939232 - L2 LINE L2 -5 3308 2811 670 230 63 37 chr9 120332552 120332743 -21938701 + MER58A DNA MER1_type 6 201 -23 480 95 27 0 chr9 120332748 120332822 -21938622 + L1PA16 LINE L1 6083 6158 -8 256 318 56 9 chr9 120332909 120333016 -21938428 + MIR SINE MIR 112 223 -39 255 175 193 0 chr9 120333587 120333644 -21937800 + L2 LINE L2 3155 3222 -50 201 213 0 0 chr9 120333796 120333843 -21937601 + (TGG)n Simple_repeat Simple_repeat 2 48 0 507 257 124 35 chr9 120334412 120334614 -21936830 - MIR SINE MIR -34 228 9 417 246 22 8 chr9 120334617 120334723 -21936721 + MER5A DNA MER1_type 4 112 -77 262 266 92 9 chr9 120335371 120335480 -21935964 - MIR SINE MIR -26 236 119 586 175 0 0 chr9 120335886 120335989 -21935455 - MLT1E LTR MaLR 0 593 491 2822 139 73 11 chr9 120335991 120336539 -21934905 + L1M4c LINE L1 1614 2195 -4189 480 324 81 11 chr9 120336552 120336737 -21934707 - MLT1E LTR MaLR -113 480 283 5175 116 20 28 chr9 120336738 120337711 -21933733 - L1PA13 LINE L1 0 6163 5152 7372 154 69 6 chr9 120337712 120339191 -21932253 - L1M4c LINE L1 -4790 1594 23 22 0 0 0 chr9 120340843 120340865 -21930579 + AT_rich Low_complexity Low_complexity 1 22 0 776 211 5 108 chr9 120341608 120341831 -21929613 + AluJb SINE Alu 83 282 -30 515 252 7 52 chr9 120341917 120341953 -21929491 - MER5B DNA MER1_type -4 174 138 1787 154 43 32 chr9 120341953 120342324 -21929120 - THE1C LTR MaLR 0 375 1 515 252 7 52 chr9 120342324 120342422 -21929022 - MER5B DNA MER1_type -40 138 46 11944 202 34 12 chr9 120342423 120345329 -21926115 - L1PA15 LINE L1 -13 6803 3786 243 61 0 0 chr9 120345329 120345362 -21926082 + (TG)n Simple_repeat Simple_repeat 2 34 0 11944 202 34 12 chr9 120345362 120346110 -21925334 - L1PA15 LINE L1 -3030 3786 3056 563 148 42 21 chr9 120346115 120346257 -21925187 - L1PA15 LINE L1 -4586 2201 2057 4254 241 41 89 chr9 120346266 120346483 -21924961 - L1PA12 LINE L1 -3745 3839 3613 2651 43 0 0 chr9 120346483 120346786 -21924658 - AluY SINE Alu -8 303 1 4254 241 41 89 chr9 120346786 120346991 -21924453 - L1PA12 LINE L1 -3971 3613 3400 681 56 0 0 chr9 120346991 120347081 -21924363 - L1PA5 LINE L1 -4 6150 6061 4254 241 41 89 chr9 120347081 120349975 -21921469 - L1PA12 LINE L1 -4184 3400 7 242 269 0 30 chr9 120349978 120350045 -21921399 - MER5B DNA MER1_type -110 68 4 391 268 185 0 chr9 120350091 120350248 -21921196 - MER5A DNA MER1_type 0 189 4 1030 151 92 0 chr9 120350858 120351043 -21920401 - MER66B LTR ERV1 0 486 285 209 208 0 21 chr9 120351091 120351139 -21920305 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 206 284 0 27 chr9 120351762 120351836 -21919608 + L2 LINE L2 3241 3312 -1 483 319 27 38 chr9 120352233 120352496 -21918948 - MIR SINE MIR 0 262 3 450 301 151 16 chr9 120353386 120353705 -21917739 + L3 LINE CR1 959 1320 -257 583 256 34 94 chr9 120353715 120353949 -21917495 + MIR SINE MIR 37 256 -6 714 213 132 0 chr9 120354478 120354652 -21916792 + MIR SINE MIR 9 205 -57 499 268 20 46 chr9 120356153 120356306 -21915138 - MER5B DNA MER1_type 0 178 30 227 373 10 10 chr9 120356325 120356427 -21915017 + L2 LINE L2 2794 2895 -419 2099 110 27 137 chr9 120356541 120357022 -21914422 - MSTA LTR MaLR 0 428 1 209 302 94 47 chr9 120357078 120357227 -21914217 + L2 LINE L2 3158 3313 0 1787 195 41 27 chr9 120357407 120357849 -21913595 + LTR45B LTR ERV1 2 449 -40 255 286 39 0 chr9 120357926 120358003 -21913441 + L2 LINE L2 3193 3272 0 182 379 50 6 chr9 120358932 120359093 -21912351 - MIR SINE MIR -90 172 5 2298 106 47 36 chr9 120359223 120359583 -21911861 + THE1B LTR MaLR 1 364 0 255 275 111 53 chr9 120359669 120359858 -21911586 + L2 LINE L2 2599 2798 -516 219 309 0 15 chr9 120359952 120360020 -21911424 + MIR SINE MIR 188 254 -8 189 147 0 0 chr9 120360037 120360071 -21911373 + (TTA)n Simple_repeat Simple_repeat 3 36 0 307 347 106 47 chr9 120360142 120360416 -21911028 + L2 LINE L2 2973 3262 -10 1714 189 0 3 chr9 120360504 120360810 -21910634 + AluJo SINE Alu 1 305 -7 453 324 0 0 chr9 120361144 120361323 -21910121 + (CA)n Simple_repeat Simple_repeat 2 180 0 327 270 0 0 chr9 120361353 120361589 -21909855 + (CA)n Simple_repeat Simple_repeat 1 236 0 255 160 0 0 chr9 120361594 120361644 -21909800 - MER4-int LTR ERV1 -5438 1160 1111 301 313 53 40 chr9 120361689 120361839 -21909605 - L2 LINE L2 -4 3309 3158 497 252 48 14 chr9 120361904 120362051 -21909393 - MIR SINE MIR -12 250 99 271 273 104 52 chr9 120362549 120362703 -21908741 - MIR3 SINE MIR -35 173 12 404 274 43 39 chr9 120363128 120363286 -21908158 - Tigger8 DNA MER2_type -24 642 481 2390 159 2 44 chr9 120363286 120363719 -21907725 + MER47B DNA MER2_type 1 415 -3 404 274 43 39 chr9 120363719 120363794 -21907650 - Tigger8 DNA MER2_type -185 481 408 275 411 8 8 chr9 120363922 120364051 -21907393 - MIR SINE MIR -63 145 17 969 188 11 0 chr9 120364064 120364250 -21907194 - MER5A DNA MER1_type -1 188 1 300 321 161 0 chr9 120364269 120364431 -21907013 - MIR SINE MIR -51 211 24 704 296 39 0 chr9 120364455 120364715 -21906729 - Tigger8 DNA MER2_type -305 361 92 363 299 71 19 chr9 120365298 120365452 -21905992 + MIR SINE MIR 31 192 -70 294 193 109 144 chr9 120367032 120367234 -21904210 - MIR SINE MIR 0 262 68 788 304 22 0 chr9 120367382 120367609 -21903835 + MIR SINE MIR 31 262 0 1704 186 0 4 chr9 120368288 120368567 -21902877 + AluJo SINE Alu 1 278 -34 31 44 0 0 chr9 120368618 120368663 -21902781 + AT_rich Low_complexity Low_complexity 1 45 0 234 339 6 27 chr9 120369795 120369978 -21901466 + (CAT)n Simple_repeat Simple_repeat 2 180 0 368 308 62 65 chr9 120370132 120370473 -21900971 + MLT1K LTR MaLR 197 536 -52 268 309 55 18 chr9 120370922 120371032 -21900412 + MIR SINE MIR 31 144 -64 576 236 16 16 chr9 120371173 120371300 -21900144 - MIR3 SINE MIR -6 202 76 22 0 0 0 chr9 120371348 120371370 -21900074 + AT_rich Low_complexity Low_complexity 1 22 0 218 293 283 0 chr9 120371431 120371537 -21899907 + L2 LINE L2 3136 3271 -1 2013 123 0 11 chr9 120371657 120371941 -21899503 + AluSx SINE Alu 1 281 -31 459 0 0 0 chr9 120371941 120371992 -21899452 + (CA)n Simple_repeat Simple_repeat 2 52 0 234 0 0 0 chr9 120372293 120372319 -21899125 + (T)n Simple_repeat Simple_repeat 1 26 0 367 350 125 10 chr9 120372751 120372951 -21898493 + MIR SINE MIR 28 250 -12 539 283 51 28 chr9 120373026 120373203 -21898241 - MER5A DNA MER1_type 0 189 9 192 335 112 13 chr9 120373340 120373492 -21897952 - L3b LINE CR1 -197 1386 1220 320 337 130 18 chr9 120373590 120373759 -21897685 - MIR3 SINE MIR -5 203 16 307 269 74 0 chr9 120373933 120374041 -21897403 - MIR SINE MIR -94 168 53 246 175 35 18 chr9 120374054 120374111 -21897333 - L2 LINE L2 0 3313 3256 359 336 141 14 chr9 120374922 120375142 -21896302 - MIR SINE MIR -13 249 2 346 300 0 20 chr9 120375354 120375454 -21895990 + L1MC4 LINE L1 6614 6711 -1331 333 68 0 0 chr9 120375467 120375511 -21895933 + (TA)n Simple_repeat Simple_repeat 1 44 0 250 255 0 0 chr9 120375551 120375602 -21895842 + L2 LINE L2 3253 3303 -10 210 205 39 0 chr9 120375619 120375697 -21895747 + CT-rich Low_complexity Low_complexity 2 82 0 348 313 8 0 chr9 120376283 120376411 -21895033 - Charlie8 DNA MER1_type -2193 224 96 261 323 161 32 chr9 120376845 120377000 -21894444 + MIR SINE MIR 14 188 -74 287 344 8 23 chr9 120377046 120377177 -21894267 + MER5B DNA MER1_type 1 129 -49 522 225 72 0 chr9 120377423 120377534 -21893910 + L2 LINE L2 3187 3305 -8 357 309 26 87 chr9 120379051 120379429 -21892015 - MLT1I LTR MaLR -8 401 47 294 194 0 0 chr9 120381015 120381082 -21890362 + (TG)n Simple_repeat Simple_repeat 2 68 0 2582 61 0 0 chr9 120381919 120382229 -21889215 + AluY SINE Alu 1 310 -1 452 279 0 0 chr9 120383118 120383229 -21888215 + L2 LINE L2 3194 3304 -9 1328 214 82 0 chr9 120385092 120385372 -21886072 + AluJo SINE Alu 1 303 -9 23 0 0 0 chr9 120385392 120385415 -21886029 + AT_rich Low_complexity Low_complexity 1 23 0 229 329 0 13 chr9 120385429 120385505 -21885939 - MIR SINE MIR -168 94 20 2546 113 10 0 chr9 120385516 120385904 -21885540 - L1PA16 LINE L1 0 6166 5775 1167 279 61 73 chr9 120385957 120386131 -21885313 - L1MC4 LINE L1 0 8042 7867 2513 47 0 7 chr9 120386131 120386428 -21885016 + AluY SINE Alu 1 295 -16 1167 279 61 73 chr9 120386428 120387187 -21884257 - L1MC4 LINE L1 -175 7867 7120 414 0 0 0 chr9 120387228 120387274 -21884170 + (TG)n Simple_repeat Simple_repeat 2 47 0 195 42 0 0 chr9 120388110 120388134 -21883310 + (CGGGG)n Simple_repeat Simple_repeat 5 28 0 1128 213 45 0 chr9 120388655 120388876 -21882568 - MIR SINE MIR 0 262 32 316 297 137 80 chr9 120389228 120389370 -21882074 + L2 LINE L2 2998 3157 -115 929 253 14 5 chr9 120389370 120389591 -21881853 + MER58A DNA MER1_type 1 223 -1 316 297 137 80 chr9 120389591 120389660 -21881784 + L2 LINE L2 3157 3221 -51 517 349 91 43 chr9 120390676 120391161 -21880283 - L3 LINE CR1 -4 1573 1066 515 226 65 13 chr9 120392407 120392562 -21878882 - MER104 DNA Tc2 -14 166 4 2170 186 72 16 chr9 120392828 120393327 -21878117 + L1MB5 LINE L1 5648 6174 0 202 316 102 0 chr9 120394259 120394357 -21877087 + L2 LINE L2 2918 3025 -247 1684 45 0 0 chr9 120394446 120394644 -21876800 + AluY SINE Alu 105 302 -9 820 158 103 7 chr9 120394692 120394838 -21876606 + FRAM SINE Alu 1 158 -18 611 284 98 77 chr9 120395263 120395741 -21875703 + L1MEd LINE L1 668 1155 -4964 911 265 61 40 chr9 120397077 120397504 -21873940 - LTR16A1 LTR ERVL -21 436 1 244 167 14 28 chr9 120397833 120397905 -21873539 - L1MA7 LINE L1 0 6291 6221 * 2163 167 2 12 chr9 120397903 120398304 -21873140 + L1M2 LINE L1 5407 5803 -488 302 173 0 0 chr9 120398339 120398391 -21873053 - L2 LINE L2 0 3313 3262 284 390 52 0 chr9 120398718 120398854 -21872590 - L2 LINE L2 -14 3258 3116 687 314 152 17 chr9 120399109 120399530 -21871914 - L2 LINE L2 -457 2857 2380 230 376 67 18 chr9 120399572 120399737 -21871707 - L2 LINE L2 -224 3048 2876 234 0 0 0 chr9 120399896 120399922 -21871522 + (TTG)n Simple_repeat Simple_repeat 2 27 0 951 179 27 5 chr9 120400510 120400694 -21870750 - MER58A DNA MER1_type 0 224 37 2003 135 4 0 chr9 120400988 120401289 -21870155 - AluSx SINE Alu 0 302 1 5530 142 7 0 chr9 120401487 120402436 -21869008 + L1PA16 LINE L1 5203 6158 -8 684 328 79 14 chr9 120402551 120402920 -21868524 - LTR16C LTR ERVL -2 489 97 622 267 63 77 chr9 120403657 120403942 -21867502 + L3 LINE CR1 1265 1545 -32 361 271 239 11 chr9 120403948 120404136 -21867308 + MIR SINE MIR 31 261 -1 486 316 5 58 chr9 120404647 120404853 -21866591 - MIR SINE MIR -3 259 65 382 288 30 78 chr9 120405265 120405295 -21866149 + MIR SINE MIR 7 37 -225 2194 97 0 7 chr9 120405295 120405594 -21865850 + AluSc SINE Alu 1 297 -12 382 288 30 78 chr9 120405594 120405767 -21865677 + MIR SINE MIR 37 210 -52 250 311 48 19 chr9 120406572 120406675 -21864769 + MIR SINE MIR 79 184 -78 330 341 132 44 chr9 120406706 120407093 -21864351 - L2 LINE L2 -36 3277 2857 426 296 113 42 chr9 120407849 120408034 -21863410 + MIR3 SINE MIR 1 199 -9 227 216 0 20 chr9 120408267 120408318 -21863126 - MIR SINE MIR -130 132 83 201 256 116 23 chr9 120410267 120410353 -21861091 + MIR SINE MIR 85 178 -84 810 254 141 0 chr9 120410815 120411098 -21860346 - MER5C DNA MER1_type -1 323 1 542 248 12 31 chr9 120411180 120411341 -21860103 + L2 LINE L2 3138 3295 -18 455 320 105 48 chr9 120411604 120412100 -21859344 + L1MEd LINE L1 889 1356 -1134 2648 68 2 92 chr9 120412100 120412514 -21858930 + MER51B LTR ERV1 1 377 0 4139 135 16 44 chr9 120412514 120413222 -21858222 + LTR8 LTR ERV1 3 691 0 455 320 105 48 chr9 120413222 120413457 -21857987 + L1MEd LINE L1 1355 1752 -738 626 271 106 61 chr9 120413727 120414200 -21857244 + L1MEd LINE L1 2093 2586 -3543 2170 98 30 3 chr9 120414375 120414670 -21856774 + AluSg SINE Alu 1 303 -7 761 215 11 54 chr9 120414800 120414986 -21856458 - MER5B DNA MER1_type 0 178 1 263 307 112 30 chr9 120415531 120415700 -21855744 + MIR SINE MIR 28 262 0 393 330 145 36 chr9 120416408 120416766 -21854678 - L2 LINE L2 -11 3261 2865 966 165 121 15 chr9 120416812 120417085 -21854359 + MER33 DNA MER1_type 1 302 -22 256 311 33 36 chr9 120417286 120417592 -21853852 + L1M4 LINE L1 4096 4400 -1746 2119 196 14 7 chr9 120417691 120418136 -21853308 - L1MD1 LINE L1 -1 6224 5777 1778 208 25 6 chr9 120418139 120418495 -21852949 + MLT1A1 LTR MaLR 3 365 0 6516 241 73 2 chr9 120418495 120420102 -21851342 + MLT1A1-int LTR MaLR 1 1722 -13 1670 215 25 8 chr9 120420113 120420437 -21851007 + MLT1A1 LTR MaLR 1 333 -32 1868 165 42 0 chr9 120420437 120420771 -21850673 + MER7A DNA MER2_type 1 346 0 1670 215 25 8 chr9 120420771 120420804 -21850640 + MLT1A1 LTR MaLR 333 364 -1 2359 210 20 4 chr9 120420804 120421494 -21849950 - L1MD1 LINE L1 -444 5781 5082 324 211 73 8 chr9 120421572 120421695 -21849749 - L1MD1 LINE L1 -1052 5077 4947 216 149 0 0 chr9 120421719 120421766 -21849678 + (TTC)n Simple_repeat Simple_repeat 2 48 0 1938 250 34 25 chr9 120421780 120422540 -21848904 - L1MD1 LINE L1 -1198 4931 4165 1130 263 36 26 chr9 120422526 120422910 -21848534 - L1MD1 LINE L1 -4541 1588 1201 * 1041 292 106 18 chr9 120422911 120423422 -21848022 + L1MC4a LINE L1 5423 5978 -1830 380 306 61 28 chr9 120423803 120423983 -21847461 + MIR SINE MIR 77 262 0 1529 154 42 0 chr9 120424198 120424458 -21846986 - L1PA15 LINE L1 -1 6164 5894 186 307 93 13 chr9 120425073 120425148 -21846296 - L3b LINE CR1 -3 1580 1500 210 219 0 0 chr9 120425470 120425511 -21845933 + (TG)n Simple_repeat Simple_repeat 2 42 0 752 244 196 29 chr9 120425600 120425916 -21845528 + MLT1H1 LTR MaLR 49 417 -138 1560 259 52 72 chr9 120425973 120426269 -21845175 + L1ME LINE L1 8 308 -5762 2373 85 0 0 chr9 120426269 120426564 -21844880 + AluSg SINE Alu 1 295 -15 1560 259 52 72 chr9 120426564 120426958 -21844486 + L1ME LINE L1 308 684 -5386 253 293 47 19 chr9 120426980 120427086 -21844358 - MIR SINE MIR -6 256 148 198 103 0 0 chr9 120427199 120427228 -21844216 + (TAA)n Simple_repeat Simple_repeat 2 30 0 436 300 29 0 chr9 120427641 120427781 -21843663 - MIR SINE MIR -104 158 15 30 45 0 0 chr9 120428737 120428781 -21842663 + AT_rich Low_complexity Low_complexity 1 44 0 1378 290 75 47 chr9 120429421 120429913 -21841531 + L1MEc LINE L1 679 1156 -5059 2319 118 0 0 chr9 120429913 120430226 -21841218 + AluSq SINE Alu 1 313 0 1378 290 75 47 chr9 120430226 120430341 -21841103 + L1MEc LINE L1 1156 1266 -4949 285 29 0 0 chr9 120430341 120430375 -21841069 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1378 290 75 47 chr9 120430375 120431885 -21839559 + L1MEc LINE L1 1266 2812 -3403 399 306 81 5 chr9 120433338 120433560 -21837884 - L1MD1 LINE L1 -4908 1211 973 2286 117 122 8 chr9 120434343 120434727 -21836717 + MSTA LTR MaLR 1 428 0 337 306 218 5 chr9 120434737 120434930 -21836514 - MIR SINE MIR 0 262 29 195 162 0 0 chr9 120436084 120436121 -21835323 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 288 262 119 0 chr9 120436132 120436216 -21835228 - L1MC4a LINE L1 -1884 5924 5831 260 282 14 0 chr9 120436232 120436303 -21835141 + MIR SINE MIR 84 155 -107 300 143 0 0 chr9 120436625 120436681 -21834763 + (TG)n Simple_repeat Simple_repeat 1 56 0 298 306 139 23 chr9 120436802 120436975 -21834469 + MIR SINE MIR 20 212 -50 189 0 0 0 chr9 120438214 120438235 -21833209 + (A)n Simple_repeat Simple_repeat 1 21 0 1836 171 0 0 chr9 120438328 120438627 -21832817 - AluSx SINE Alu -5 307 9 434 344 57 45 chr9 120438634 120438948 -21832496 + L2 LINE L2 2510 2827 -487 367 236 96 45 chr9 120439046 120439224 -21832220 + L1MA5 LINE L1 556 742 -6426 7334 191 9 48 chr9 120439318 120440732 -21830712 + L1MA5 LINE L1 643 2001 -5167 730 136 0 107 chr9 120440740 120440880 -21830564 + FLAM_C SINE Alu 1 125 -18 3166 217 35 49 chr9 120440898 120441858 -21829586 + L1MA5 LINE L1 1997 2943 -4225 * 7031 172 17 40 chr9 120441838 120442367 -21829077 + L1MA5 LINE L1 4734 5273 -2048 231 36 0 0 chr9 120442367 120442395 -21829049 + (CA)n Simple_repeat Simple_repeat 2 29 0 7031 172 17 40 chr9 120442395 120442931 -21828513 + L1MA5 LINE L1 5273 5820 -1501 1981 117 0 31 chr9 120442931 120443272 -21828172 + AluSg SINE Alu 1 332 0 7031 172 17 40 chr9 120443272 120444850 -21826594 + L1MA5 LINE L1 5820 7319 -2 210 37 0 0 chr9 120445454 120445481 -21825963 + (A)n Simple_repeat Simple_repeat 1 27 0 246 319 107 34 chr9 120445583 120445772 -21825672 - MIR SINE MIR -56 206 3 418 181 170 11 chr9 120445824 120445918 -21825526 - L2 LINE L2 -13 3259 3151 237 333 180 0 chr9 120446267 120446417 -21825027 + MIR3 SINE MIR 29 205 -3 352 261 32 70 chr9 120446792 120446949 -21824495 - MIR3 SINE MIR -18 190 40 23 54 0 0 chr9 120447205 120447242 -21824202 + AT_rich Low_complexity Low_complexity 1 37 0 293 275 64 9 chr9 120447510 120447619 -21823825 + MIR SINE MIR 85 199 -63 188 268 225 0 chr9 120447650 120447721 -21823723 - MIR SINE MIR -50 212 126 6465 25 0 5 chr9 120447846 120448604 -21822840 - L1PA3 LINE L1 0 6155 5402 788 249 28 18 chr9 120448607 120448824 -21822620 + MER20 DNA MER1_type 1 219 0 190 300 54 46 chr9 120449050 120449180 -21822264 + L2 LINE L2 3140 3270 -43 184 336 80 56 chr9 120449208 120449333 -21822111 - MIR SINE MIR -86 176 49 289 242 13 55 chr9 120449592 120449709 -21821735 + MIR SINE MIR 73 183 -62 2997 222 28 0 chr9 120449724 120450359 -21821085 + MER82 DNA MER2_type 1 653 0 1266 252 85 25 chr9 120450392 120450700 -21820744 + L1ME3A LINE L1 5325 5613 -557 1982 132 3 35 chr9 120450700 120451018 -21820426 + AluSx SINE Alu 1 308 -4 1266 252 85 25 chr9 120451018 120451457 -21819987 + L1ME3A LINE L1 5613 6170 0 312 369 56 12 chr9 120451537 120451697 -21819747 + MER5B DNA MER1_type 3 169 -9 204 209 174 23 chr9 120451790 120451876 -21819568 - MIR SINE MIR -65 143 63 * 363 282 21 21 chr9 120451873 120452013 -21819431 - MIR SINE MIR -54 208 69 405 344 0 8 chr9 120454041 120454172 -21817272 + MIR SINE MIR 20 149 -113 226 390 67 34 chr9 120454425 120454694 -21816750 + L2 LINE L2 2430 2707 -607 910 189 0 7 chr9 120454826 120454979 -21816465 + MER20 DNA MER1_type 67 218 -1 333 0 0 0 chr9 120455706 120455743 -21815701 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 22 35 0 0 chr9 120455924 120455953 -21815491 + AT_rich Low_complexity Low_complexity 1 29 0 206 195 177 88 chr9 120456459 120456572 -21814872 - MIR SINE MIR -16 246 124 402 338 48 0 chr9 120456765 120456910 -21814534 - MIR SINE MIR -71 191 40 444 314 12 35 chr9 120458032 120458201 -21813243 - MIR3 SINE MIR -42 166 2 508 254 102 29 chr9 120458910 120459115 -21812329 - MIR SINE MIR -3 259 40 2425 76 0 0 chr9 120459185 120459488 -21811956 - AluY SINE Alu -8 303 1 632 296 138 62 chr9 120459517 120460048 -21811396 - L2 LINE L2 0 3313 2731 1318 210 96 13 chr9 120460331 120460645 -21810799 - MER58B DNA MER1_type -1 340 1 2581 127 4 67 chr9 120460782 120461232 -21810212 - MSTB LTR MaLR -4 422 1 1382 306 59 2 chr9 120461301 120461761 -21809683 + LTR16C LTR ERVL 2 487 -4 496 359 43 31 chr9 120461872 120462198 -21809246 + L3 LINE CR1 1245 1574 -3 408 366 12 6 chr9 120462915 120463076 -21808368 + MIR3 SINE MIR 39 200 -8 189 74 0 0 chr9 120463162 120463189 -21808255 + (CA)n Simple_repeat Simple_repeat 2 28 0 284 143 82 0 chr9 120463505 120463554 -21807890 + MER63A DNA MER1_type 5 57 0 249 333 14 0 chr9 120463587 120463659 -21807785 + MER63A DNA MER1_type 133 205 -5 2412 83 3 0 chr9 120464064 120464366 -21807078 + AluY SINE Alu 1 303 -8 1013 193 222 0 chr9 120464705 120464719 -21806725 + L1M4 LINE L1 3599 3609 -2537 1348 183 43 75 chr9 120464719 120465041 -21806403 + AluJb SINE Alu 1 312 0 1013 193 222 0 chr9 120465041 120465332 -21806112 + L1M4 LINE L1 3609 3972 -2174 404 301 97 15 chr9 120465554 120465760 -21805684 + MIR SINE MIR 40 262 0 368 353 8 16 chr9 120465898 120466020 -21805424 + MIR3 SINE MIR 85 205 -3 537 243 86 7 chr9 120466951 120467103 -21804341 - MER20 DNA MER1_type 0 219 56 1265 131 10 0 chr9 120467161 120467367 -21804077 + L1MA3 LINE L1 6090 6297 -8 276 411 68 28 chr9 120467395 120467643 -21803801 + L2 LINE L2 2973 3230 -42 329 241 58 88 chr9 120467760 120467897 -21803547 - MLT1K LTR MaLR -4 584 452 300 261 23 69 chr9 120470082 120470212 -21801232 + MIR SINE MIR 45 168 -94 185 313 115 31 chr9 120470365 120470461 -21800983 + MIR SINE MIR 119 222 -40 287 288 80 12 chr9 120470864 120470991 -21800453 + MER5A DNA MER1_type 12 161 -28 439 322 29 0 chr9 120471154 120471325 -21800119 + MIR SINE MIR 13 188 -74 690 315 64 62 chr9 120471365 120472006 -21799438 + L1MEc LINE L1 44 685 -5711 697 301 34 5 chr9 120472022 120472228 -21799216 + MER58A DNA MER1_type 12 223 -1 854 276 93 74 chr9 120472403 120472442 -21799002 + L1MEc LINE L1 805 842 -5554 1691 193 6 10 chr9 120472442 120472753 -21798691 + AluJo SINE Alu 1 310 -2 854 276 93 74 chr9 120472753 120473058 -21798386 + L1MEc LINE L1 842 1140 -5256 237 178 0 0 chr9 120473058 120473103 -21798341 + (CA)n Simple_repeat Simple_repeat 2 46 0 854 276 93 74 chr9 120473103 120473831 -21797613 + L1MEc LINE L1 1140 1943 -4453 1948 168 3 13 chr9 120473874 120474189 -21797255 + AluJb SINE Alu 1 312 0 224 316 0 0 chr9 120474359 120474416 -21797028 - L2 LINE L2 -61 3211 3155 252 348 0 76 chr9 120474671 120474789 -21796655 + L2 LINE L2 2255 2363 -951 2159 95 3 3 chr9 120475025 120475342 -21796102 - AluSq SINE Alu 0 317 1 281 346 148 4 chr9 120475763 120476026 -21795418 + L2 LINE L2 2466 2766 -548 260 280 80 30 chr9 120476093 120476193 -21795251 + L2 LINE L2 3155 3259 -13 2254 129 0 0 chr9 120477116 120477425 -21794019 + AluSx SINE Alu 1 309 -3 317 318 84 50 chr9 120477459 120477698 -21793746 + L2 LINE L2 2836 3082 -190 419 297 22 49 chr9 120478221 120478406 -21793038 - MLT1K LTR MaLR -250 338 159 216 250 57 93 chr9 120478800 120478940 -21792504 + MIR3 SINE MIR 2 136 -72 200 89 89 0 chr9 120479544 120479600 -21791844 + (TTAA)n Simple_repeat Simple_repeat 2 62 0 481 261 45 60 chr9 120479628 120479827 -21791617 - L2 LINE L2 0 3313 3118 2223 55 19 58 chr9 120480110 120480421 -21791023 - AluY SINE Alu -12 299 1 417 313 28 0 chr9 120481026 120481208 -21790236 - MER117 DNA MER1_type -6 191 5 313 287 25 0 chr9 120481762 120481884 -21789560 + L1MA9 LINE L1 6150 6274 -38 212 272 175 48 chr9 120481949 120482052 -21789392 + MIR3 SINE MIR 13 128 -80 3747 114 96 85 chr9 120482817 120484210 -21787234 - pTR5 LTR ERV1 0 2438 66 417 278 111 14 chr9 120485039 120485183 -21786261 - MIR3 SINE MIR -30 178 21 205 236 106 57 chr9 120485345 120485468 -21785976 - L2 LINE L2 -75 3238 3110 189 0 0 0 chr9 120486327 120486348 -21785096 + (TG)n Simple_repeat Simple_repeat 2 22 0 345 131 0 0 chr9 120486465 120486526 -21784918 + (GA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr9 120487370 120487391 -21784053 + AT_rich Low_complexity Low_complexity 1 21 0 261 273 68 0 chr9 120487830 120487918 -21783526 - MIR SINE MIR -73 189 96 294 345 49 28 chr9 120488072 120488214 -21783230 + MIR SINE MIR 20 164 -98 225 65 0 0 chr9 120488226 120488257 -21783187 + (AAATG)n Simple_repeat Simple_repeat 5 35 0 2158 123 3 22 chr9 120488346 120488664 -21782780 - AluSx SINE Alu 0 312 1 1648 280 38 19 chr9 120488711 120489243 -21782201 - MLT1F LTR MaLR 0 542 1 210 378 13 20 chr9 120489595 120489746 -21781698 - MER5A DNA MER1_type 0 189 40 192 315 68 68 chr9 120489622 120489768 -21781676 + MER5A DNA MER1_type 38 183 -6 * 1742 178 11 0 chr9 120490534 120490815 -21780629 + AluJb SINE Alu 12 295 -17 726 293 34 21 chr9 120490924 120491163 -21780281 + MIR SINE MIR 8 249 -13 282 298 60 73 chr9 120491171 120491389 -21780055 - L2 LINE L2 -248 3024 2810 222 299 222 7 chr9 120492284 120492428 -21779016 - MIR SINE MIR -67 195 21 324 295 42 11 chr9 120492456 120492551 -21778893 + L2 LINE L2 3172 3269 -3 357 323 35 93 chr9 120493282 120493508 -21777936 + MIR SINE MIR 49 261 -1 1792 155 3 65 chr9 120493572 120493894 -21777550 + AluSx SINE Alu 1 302 -10 346 319 90 69 chr9 120493969 120494304 -21777140 - L2 LINE L2 0 3272 2931 652 239 9 74 chr9 120494365 120494595 -21776849 - MER20 DNA MER1_type -4 215 1 339 318 0 0 chr9 120496049 120496228 -21775216 + (TA)n Simple_repeat Simple_repeat 1 179 0 207 232 61 49 chr9 120496172 120496336 -21775108 + (TCTA)n Simple_repeat Simple_repeat 4 169 0 * 10684 42 2 1 chr9 120498481 120500565 -21770879 - L1PA5 LINE L1 -1 6153 4069 193 356 0 0 chr9 120500565 120500638 -21770806 + MIR SINE MIR 131 203 -59 23 0 0 0 chr9 120502009 120502032 -21769412 + AT_rich Low_complexity Low_complexity 1 23 0 268 333 89 24 chr9 120502079 120502202 -21769242 - L2 LINE L2 -4 3268 3138 277 329 132 18 chr9 120502520 120502687 -21768757 + MIR SINE MIR 59 244 -18 239 364 29 0 chr9 120502721 120502870 -21768574 + MIR SINE MIR 29 185 -64 235 357 0 0 chr9 120502881 120502965 -21768479 - L2 LINE L2 0 3272 3189 22 0 0 0 chr9 120503077 120503099 -21768345 + AT_rich Low_complexity Low_complexity 1 22 0 2368 119 19 8 chr9 120504177 120504548 -21766896 - THE1C LTR MaLR 0 375 1 457 204 97 0 chr9 120504734 120504827 -21766617 - MER5A DNA MER1_type -79 110 9 946 183 23 0 chr9 120505235 120505410 -21766034 - MSTD LTR MaLR 0 396 218 210 323 76 62 chr9 120505579 120505867 -21765577 + L2 LINE L2 2557 2848 -466 1969 188 26 36 chr9 120505934 120505975 -21765469 - MLT2D LTR ERVL 0 414 374 333 0 0 0 chr9 120505975 120506012 -21765432 + (TG)n Simple_repeat Simple_repeat 2 38 0 1969 188 26 36 chr9 120506012 120506386 -21765058 - MLT2D LTR ERVL -40 374 3 639 208 202 11 chr9 120506738 120506916 -21764528 + MIR SINE MIR 41 252 -10 686 176 0 80 chr9 120507111 120507287 -21764157 + Tigger1 DNA MER2_type 2 163 -2255 416 83 0 14 chr9 120507268 120507340 -21764104 + Tigger1 DNA MER2_type 2202 2272 -146 * 488 162 0 68 chr9 120507343 120507460 -21763984 + Tigger1 DNA MER2_type 55 163 -2255 * 1278 132 0 5 chr9 120507446 120507659 -21763785 + Tigger1 DNA MER2_type 2207 2418 0 1996 116 0 4 chr9 120507784 120508059 -21763385 + AluSg SINE Alu 1 274 -36 265 324 122 11 chr9 120508291 120508465 -21762979 + MIR SINE MIR 19 210 -52 2106 134 3 0 chr9 120508643 120508949 -21762495 - AluSx SINE Alu -5 307 1 251 211 133 44 chr9 120509038 120509128 -21762316 + MER5B DNA MER1_type 1 98 -80 2111 105 0 20 chr9 120509165 120509470 -21761974 + AluSq SINE Alu 1 299 -14 384 214 220 0 chr9 120510039 120510207 -21761237 - L1MC4 LINE L1 -2 8040 7836 190 364 0 0 chr9 120510933 120511021 -21760423 + MIR SINE MIR 146 233 -29 296 259 0 0 chr9 120511413 120511467 -21759977 + L2 LINE L2 3203 3256 -16 246 350 0 0 chr9 120511656 120511716 -21759728 - L2 LINE L2 -10 3262 3203 1768 140 0 0 chr9 120511765 120512022 -21759422 - AluSx SINE Alu -17 295 39 24 103 0 0 chr9 120512283 120512370 -21759074 + AT_rich Low_complexity Low_complexity 1 87 0 312 137 0 0 chr9 120512510 120512561 -21758883 + (CA)n Simple_repeat Simple_repeat 2 52 0 221 233 0 0 chr9 120512769 120512812 -21758632 + (TG)n Simple_repeat Simple_repeat 2 44 0 1183 212 40 54 chr9 120513926 120514300 -21757144 + MLT1A2 LTR MaLR 3 374 0 243 88 0 0 chr9 120514366 120514400 -21757044 + (TCC)n Simple_repeat Simple_repeat 3 36 0 206 318 8 24 chr9 120514483 120514609 -21756835 + CT-rich Low_complexity Low_complexity 3 126 0 208 185 22 43 chr9 120514629 120514721 -21756723 + CT-rich Low_complexity Low_complexity 1 90 0 301 289 141 19 chr9 120515214 120515370 -21756074 - MIR SINE MIR 0 262 88 447 295 36 0 chr9 120515497 120515636 -21755808 - MIR SINE MIR -45 217 74 21 57 0 0 chr9 120515902 120515937 -21755507 + AT_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr9 120516150 120516181 -21755263 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr9 120516356 120516380 -21755064 + AT_rich Low_complexity Low_complexity 1 24 0 2000 138 21 44 chr9 120516642 120517026 -21754418 + THE1C LTR MaLR 1 375 0 659 257 58 35 chr9 120517792 120518018 -21753426 - MIR SINE MIR -2 260 30 21 57 0 0 chr9 120518082 120518117 -21753327 + AT_rich Low_complexity Low_complexity 1 35 0 248 56 28 0 chr9 120518621 120518657 -21752787 - MLT1I LTR MaLR -279 130 94 198 340 40 10 chr9 120519990 120520090 -21751354 - MIR SINE MIR -76 132 30 22 70 0 0 chr9 120521214 120521257 -21750187 + AT_rich Low_complexity Low_complexity 1 43 0 247 161 81 0 chr9 120521257 120521319 -21750125 + HSMAR1 DNA Mariner 1221 1287 0 204 329 14 14 chr9 120522062 120522135 -21749309 - MIR SINE MIR -161 101 29 483 288 98 16 chr9 120522794 120522978 -21748466 - MIR SINE MIR -11 251 53 188 297 216 0 chr9 120523089 120523163 -21748281 - MIR SINE MIR -74 134 45 270 0 0 0 chr9 120523754 120523784 -21747660 + (T)n Simple_repeat Simple_repeat 1 30 0 265 382 115 7 chr9 120524606 120524823 -21746621 - MIR SINE MIR -23 239 3 294 261 68 99 chr9 120525950 120526111 -21745333 - MIR3 SINE MIR -12 196 41 226 330 19 47 chr9 120527062 120527168 -21744276 - L2 LINE L2 -207 3065 2963 246 128 0 0 chr9 120527177 120527216 -21744228 + (TG)n Simple_repeat Simple_repeat 2 40 0 3988 254 76 65 chr9 120527625 120529790 -21741654 + L1MB8 LINE L1 4 2160 -4799 3416 185 59 1 chr9 120529790 120530531 -21740913 + L1MA7 LINE L1 5508 6291 0 3988 254 76 65 chr9 120530531 120530790 -21740654 + L1MB8 LINE L1 2160 2415 -4544 4493 224 23 27 chr9 120531088 120533243 -21738201 + L1MB8 LINE L1 4806 6951 -38 317 169 26 0 chr9 120534926 120535003 -21736441 + CT-rich Low_complexity Low_complexity 3 81 0 2067 146 46 3 chr9 120535332 120535655 -21735789 + MER1B DNA MER1_type 1 337 0 373 307 22 44 chr9 120536032 120536169 -21735275 - MIR SINE MIR -125 137 4 202 333 54 18 chr9 120537474 120537585 -21733859 - L2 LINE L2 0 3313 3199 332 346 30 23 chr9 120537648 120537781 -21733663 - L2 LINE L2 -2 3270 3137 498 269 37 125 chr9 120537871 120538000 -21733444 + L2 LINE L2 2770 2909 -404 940 157 91 52 chr9 120538000 120538210 -21733234 - MER20 DNA MER1_type 0 219 2 498 269 37 125 chr9 120538210 120538312 -21733132 + L2 LINE L2 2909 3018 -295 1365 114 27 0 chr9 120538312 120538532 -21732912 + L1MA1 LINE L1 6072 6297 -5 498 269 37 125 chr9 120538532 120538824 -21732620 + L2 LINE L2 3018 3313 0 2364 102 13 39 chr9 120539048 120539372 -21732072 + THE1C LTR MaLR 2 316 -59 203 0 0 36 chr9 120539372 120539400 -21732044 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2364 102 13 39 chr9 120539400 120539459 -21731985 + THE1C LTR MaLR 316 375 0 228 264 28 56 chr9 120539921 120539993 -21731451 - L2 LINE L2 -69 3244 3175 365 235 42 0 chr9 120540366 120540485 -21730959 - MER103 DNA DNA -8 158 35 463 250 6 32 chr9 120540549 120540705 -21730739 - MER104 DNA Tc2 -14 166 15 250 294 0 12 chr9 120540961 120541046 -21730398 + MLT1I LTR MaLR 82 165 -244 673 100 58 8 chr9 120541465 120541585 -21729859 + L1PA12 LINE L1 6043 6168 0 2417 219 45 6 chr9 120542479 120543014 -21728430 - MER74A LTR ERVL -2 556 1 400 293 32 0 chr9 120543112 120543235 -21728209 - MIR SINE MIR -6 256 130 340 277 40 0 chr9 120543413 120543514 -21727930 - MIR SINE MIR -22 240 136 2760 179 9 7 chr9 120543764 120544307 -21727137 + L1MB3 LINE L1 5483 6026 -157 443 184 0 0 chr9 120544299 120544386 -21727058 + L1MB4 LINE L1 6062 6148 -32 * 213 39 0 0 chr9 120544386 120544412 -21727032 + (TTATG)n Simple_repeat Simple_repeat 5 30 0 1020 155 3 3 chr9 120544643 120544945 -21726499 + MLT1B LTR MaLR 7 390 0 299 238 129 10 chr9 120545725 120545826 -21725618 + MIR SINE MIR 59 171 -91 230 229 29 14 chr9 120546003 120546073 -21725371 + GA-rich Low_complexity Low_complexity 2 72 0 796 300 107 28 chr9 120546759 120546811 -21724633 + L2 LINE L2 2921 2967 -346 1065 220 62 13 chr9 120546811 120547120 -21724324 - MER33 DNA MER1_type 0 324 1 796 300 107 28 chr9 120547120 120547430 -21724014 + L2 LINE L2 2967 3312 -1 278 380 41 63 chr9 120547528 120547846 -21723598 + L2 LINE L2 2918 3228 -44 511 286 71 10 chr9 120547899 120548095 -21723349 - L2 LINE L2 -8 3305 3098 200 254 0 18 chr9 120548194 120548249 -21723195 + MIR SINE MIR 87 140 -68 633 129 50 0 chr9 120548810 120548911 -21722533 - L1PA11 LINE L1 0 6174 6069 753 113 0 0 chr9 120548912 120549018 -21722426 - U6 snRNA snRNA -1 106 1 199 222 37 0 chr9 120549023 120549077 -21722367 - MIR SINE MIR -101 161 106 264 130 0 0 chr9 120549310 120549356 -21722088 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 397 342 9 0 chr9 120549773 120549884 -21721560 + MIR3 SINE MIR 74 185 -23 243 347 53 0 chr9 120549921 120550016 -21721428 - L2 LINE L2 0 3272 3173 291 307 0 0 chr9 120551501 120551589 -21719855 + (TTCA)n Simple_repeat Simple_repeat 1 88 0 440 328 45 20 chr9 120551767 120551963 -21719481 + MIR SINE MIR 30 230 -32 2408 101 14 25 chr9 120552506 120552874 -21718570 - THE1B LTR MaLR 0 364 1 1627 192 7 27 chr9 120552897 120553189 -21718255 - AluSx SINE Alu -26 286 1 214 314 146 80 chr9 120553637 120553774 -21717670 - MIR SINE MIR -70 192 47 23 0 0 0 chr9 120554490 120554513 -21716931 + AT_rich Low_complexity Low_complexity 1 23 0 565 299 11 23 chr9 120554513 120554687 -21716757 - MIR SINE MIR -55 207 36 2055 138 7 3 chr9 120555994 120556298 -21715146 - AluSx SINE Alu -7 305 1 290 250 139 0 chr9 120556606 120556714 -21714730 + MER63 DNA MER1_type 1 749 -87 518 294 70 114 chr9 120556797 120556885 -21714559 + L2 LINE L2 2832 2922 -350 2629 103 8 0 chr9 120556885 120557244 -21714200 - THE1B LTR MaLR -2 362 1 518 294 70 114 chr9 120557244 120557610 -21713834 + L2 LINE L2 2922 3266 -6 630 251 106 26 chr9 120558013 120558240 -21713204 + MIR SINE MIR 10 254 -8 243 375 18 9 chr9 120559170 120559282 -21712162 - L2 LINE L2 0 3272 3160 248 306 149 16 chr9 120560086 120560207 -21711237 + MIR3 SINE MIR 6 142 -66 243 133 0 0 chr9 120560400 120560445 -21710999 + (TA)n Simple_repeat Simple_repeat 1 45 0 340 336 34 17 chr9 120560514 120560633 -21710811 + L2 LINE L2 3144 3264 -8 458 272 47 35 chr9 120562056 120562225 -21709219 - MIR3 SINE MIR -35 173 3 2284 79 52 15 chr9 120562254 120562597 -21708847 - L1PA10 LINE L1 0 6168 5813 243 0 0 0 chr9 120562919 120562946 -21708498 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 204 0 0 chr9 120563524 120563573 -21707871 + MER94 DNA DNA 4 52 -82 294 29 0 0 chr9 120563773 120563808 -21707636 + (TG)n Simple_repeat Simple_repeat 2 36 0 654 284 50 16 chr9 120564457 120564766 -21706678 + MLT1H1 LTR MaLR 1 358 -237 441 0 0 0 chr9 120565045 120565094 -21706350 + (CA)n Simple_repeat Simple_repeat 2 50 0 321 252 136 29 chr9 120565115 120565258 -21706186 - MIR SINE MIR -59 203 53 498 256 39 8 chr9 120565481 120565610 -21705834 + MIR SINE MIR 77 209 -53 239 297 80 112 chr9 120565749 120566035 -21705409 - L2 LINE L2 -99 3173 2897 238 328 107 23 chr9 120566161 120566338 -21705106 - L2 LINE L2 -557 2757 2566 278 365 170 20 chr9 120567599 120567999 -21703445 + L2 LINE L2 2854 3313 0 2189 108 3 0 chr9 120568001 120568296 -21703148 + AluSx SINE Alu 1 296 -16 231 114 0 0 chr9 120568296 120568331 -21703113 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 314 344 25 8 chr9 120568558 120568680 -21702764 + MER5A DNA MER1_type 48 171 -18 * 629 208 8 8 chr9 120568572 120568697 -21702747 - MER5A DNA MER1_type -50 139 15 185 250 62 94 chr9 120568713 120568841 -21702603 + L2 LINE L2 3189 3312 -1 1914 148 0 23 chr9 120569268 120569571 -21701873 + AluSx SINE Alu 1 296 -16 204 163 0 0 chr9 120569757 120569800 -21701644 + (CATA)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr9 120570992 120571023 -21700421 + AT_rich Low_complexity Low_complexity 1 31 0 273 277 9 62 chr9 120571201 120571313 -21700131 + MIR SINE MIR 111 216 -46 2418 94 0 3 chr9 120571473 120571781 -21699663 - AluSx SINE Alu -5 307 1 412 244 24 16 chr9 120572250 120572377 -21699067 - MER117 DNA MER1_type -41 156 29 908 234 31 27 chr9 120572977 120573238 -21698206 - MIR SINE MIR 0 262 1 445 301 38 16 chr9 120573369 120573552 -21697892 - MIR SINE MIR -51 211 25 263 206 28 14 chr9 120574046 120574187 -21697257 + CT-rich Low_complexity Low_complexity 1 143 0 267 313 60 53 chr9 120575370 120575449 -21695995 - L2 LINE L2 0 3272 3190 1713 83 0 0 chr9 120575449 120575678 -21695766 + L1PA6 LINE L1 5925 6153 -1 267 313 60 53 chr9 120575678 120575748 -21695696 - L2 LINE L2 -82 3190 3122 489 287 98 6 chr9 120575932 120576096 -21695348 + MIR3 SINE MIR 21 199 -9 223 188 16 16 chr9 120576887 120576951 -21694493 + CT-rich Low_complexity Low_complexity 2 65 0 298 333 95 1 chr9 120577169 120577308 -21694136 - MIR SINE MIR -67 141 40 209 255 114 98 chr9 120577464 120577648 -21693796 - L2 LINE L2 -4 3309 3123 260 361 44 6 chr9 120578593 120578751 -21692693 + MLT1G LTR MaLR 28 191 -404 872 233 122 24 chr9 120578778 120579066 -21692378 + MLT1G LTR MaLR 262 577 -13 309 290 87 14 chr9 120579082 120579220 -21692224 + MIR SINE MIR 115 262 0 519 281 96 44 chr9 120579486 120579735 -21691709 + L3 LINE CR1 1195 1456 -121 329 231 50 38 chr9 120580498 120580629 -21690815 - MLT1I LTR MaLR -255 154 21 262 286 36 12 chr9 120580715 120580799 -21690645 + MIR SINE MIR 107 192 -70 199 167 30 15 chr9 120581407 120581473 -21689971 + (TTCA)n Simple_repeat Simple_repeat 4 70 0 469 328 86 33 chr9 120581522 120581603 -21689841 - L2 LINE L2 -13 3259 3184 240 35 0 0 chr9 120581603 120581632 -21689812 + (CAA)n Simple_repeat Simple_repeat 2 30 0 469 328 86 33 chr9 120581632 120581852 -21689592 - L2 LINE L2 -88 3184 2942 189 310 28 56 chr9 120582581 120582723 -21688721 - MIR SINE MIR -71 191 54 24 32 0 0 chr9 120582834 120582865 -21688579 + AT_rich Low_complexity Low_complexity 1 31 0 264 189 0 0 chr9 120583074 120583127 -21688317 - L1ME LINE L1 -252 5869 5817 247 333 0 0 chr9 120583202 120583262 -21688182 + MIR SINE MIR 16 75 -133 289 300 50 42 chr9 120584398 120584518 -21686926 - MIR3 SINE MIR 0 208 88 219 261 169 0 chr9 120584587 120584652 -21686792 + MIR SINE MIR 65 140 -122 183 162 0 0 chr9 120585836 120585873 -21685571 + GA-rich Low_complexity Low_complexity 4 40 0 421 314 16 0 chr9 120586859 120586983 -21684461 + MIR3 SINE MIR 35 160 -48 288 337 12 0 chr9 120587951 120588034 -21683410 - L2 LINE L2 -5 3308 3225 1572 210 54 18 chr9 120588045 120588487 -21682957 + L1ME2 LINE L1 5596 6053 -111 469 307 211 10 chr9 120588605 120588918 -21682526 - L2 LINE L2 -94 3219 2844 198 379 99 38 chr9 120590161 120590454 -21680990 + L2 LINE L2 2882 3192 -80 228 286 38 29 chr9 120590524 120590629 -21680815 - MIR SINE MIR -66 196 91 1567 160 82 26 chr9 120591934 120592277 -21679167 - MSTA LTR MaLR 0 428 67 375 243 129 91 chr9 120592338 120592601 -21678843 - MLT1H LTR MaLR -276 273 1 3417 188 21 29 chr9 120592695 120594188 -21677256 - L1MB1 LINE L1 -169 6020 4536 226 304 67 37 chr9 120594268 120594403 -21677041 + MIR SINE MIR 85 223 -39 296 325 71 71 chr9 120596167 120596450 -21674994 + MLT1K LTR MaLR 158 440 -148 1266 243 64 45 chr9 120596590 120597150 -21674294 + L1ME1 LINE L1 5592 6162 -4 346 311 87 35 chr9 120598448 120598628 -21672816 + MIR3 SINE MIR 8 206 -56 35 0 0 0 chr9 120598635 120598670 -21672774 + AT_rich Low_complexity Low_complexity 1 35 0 1716 141 54 3 chr9 120598713 120599010 -21672434 - L1PA16 LINE L1 -9 6157 5846 302 361 80 9 chr9 120599367 120599532 -21671912 - MIR3 SINE MIR -64 144 4 354 313 80 34 chr9 120599639 120599815 -21671629 - MIR3 SINE MIR -9 199 16 182 327 240 0 chr9 120600260 120600364 -21671080 + L2 LINE L2 2926 3054 -259 290 377 41 0 chr9 120603332 120603454 -21667990 - L2 LINE L2 0 3272 3146 22 0 0 0 chr9 120603896 120603918 -21667526 + AT_rich Low_complexity Low_complexity 1 22 0 4753 161 26 14 chr9 120604615 120605530 -21665914 + L1MA10 LINE L1 5408 6333 -1 1835 129 32 47 chr9 120605869 120606210 -21665234 - MER44D DNA MER2_type 0 609 4 226 303 48 62 chr9 120606723 120606849 -21664595 - MIR SINE MIR -65 143 46 229 304 176 20 chr9 120607193 120607341 -21664103 + MIR SINE MIR 18 188 -74 301 288 54 2 chr9 120607654 120607771 -21663673 + MIR SINE MIR 33 154 -61 330 338 32 37 chr9 120607841 120608057 -21663387 - MIR SINE MIR -42 220 6 442 278 68 0 chr9 120608496 120608629 -21662815 - MIR SINE MIR -42 220 79 389 345 128 5 chr9 120608677 120608880 -21662564 - MIR SINE MIR -15 247 20 1349 169 34 0 chr9 120609720 120609957 -21661487 - L1PB4 LINE L1 -2 6154 5910 223 326 61 20 chr9 120610292 120610390 -21661054 - MER5B DNA MER1_type -76 102 1 203 271 21 0 chr9 120611351 120611399 -21660045 + MIR3 SINE MIR 112 160 -48 263 181 241 0 chr9 120611731 120611814 -21659630 + MIR3 SINE MIR 105 207 -1 242 310 54 47 chr9 120612040 120612169 -21659275 + MIR SINE MIR 63 192 -70 239 325 137 39 chr9 120613384 120613522 -21657922 - L2 LINE L2 0 3272 3149 405 0 0 0 chr9 120613522 120613567 -21657877 + (CA)n Simple_repeat Simple_repeat 2 46 0 239 325 137 39 chr9 120613567 120613662 -21657782 - L2 LINE L2 -123 3149 3016 248 299 222 14 chr9 120613845 120613989 -21657455 + MIR SINE MIR 86 259 -3 191 351 0 0 chr9 120614083 120614140 -21657304 + MIR SINE MIR 40 96 -112 672 179 46 20 chr9 120614353 120614504 -21656940 - L1PB2 LINE L1 -1 6150 5996 463 271 61 6 chr9 120614504 120614685 -21656759 - L1PBa LINE L1 -6667 196 6 193 277 24 48 chr9 120614777 120614860 -21656584 - MIR SINE MIR -110 98 18 202 188 0 0 chr9 120614879 120614911 -21656533 + (TGG)n Simple_repeat Simple_repeat 1 32 0 599 314 17 42 chr9 120615226 120615465 -21655979 - MIR SINE MIR -10 252 20 254 348 45 9 chr9 120615466 120615578 -21655866 - L3 LINE CR1 -73 1504 1389 2048 132 0 10 chr9 120616180 120616484 -21654960 + AluSg SINE Alu 1 301 -9 264 283 36 72 chr9 120616823 120616961 -21654483 - MIR SINE MIR -117 145 13 1707 156 73 0 chr9 120616996 120617271 -21654173 + AluSx SINE Alu 1 295 -17 521 283 71 67 chr9 120617503 120617743 -21653701 + MIR SINE MIR 4 244 -18 262 296 23 53 chr9 120617952 120618084 -21653360 + CT-rich Low_complexity Low_complexity 4 131 0 306 0 0 0 chr9 120618627 120618661 -21652783 + (T)n Simple_repeat Simple_repeat 1 34 0 294 29 0 0 chr9 120618968 120619003 -21652441 + (TG)n Simple_repeat Simple_repeat 2 36 0 367 330 86 19 chr9 120619128 120619337 -21652107 + MIR SINE MIR 34 256 -6 197 289 133 24 chr9 120619562 120619645 -21651799 + L2 LINE L2 2962 3053 -219 204 325 25 50 chr9 120619791 120619911 -21651533 + L3 LINE CR1 1324 1440 -137 208 393 11 44 chr9 120620061 120620244 -21651200 - MER5B DNA MER1_type -1 177 1 548 309 48 10 chr9 120620511 120620718 -21650726 - MIR SINE MIR -29 233 19 822 180 22 56 chr9 120621034 120621212 -21650232 + MER63A DNA MER1_type 4 175 -35 356 289 141 8 chr9 120621962 120622090 -21649354 + MIR3 SINE MIR 2 146 -62 395 294 68 114 chr9 120622344 120622738 -21648706 + L2 LINE L2 2897 3272 0 195 267 0 0 chr9 120623346 120623391 -21648053 - L2 LINE L2 -4 3309 3265 316 319 11 81 chr9 120623456 120623641 -21647803 + MIR SINE MIR 50 221 -41 205 138 0 0 chr9 120624181 120624210 -21647234 + (GAA)n Simple_repeat Simple_repeat 2 30 0 2028 101 0 57 chr9 120624210 120624532 -21646912 + AluY SINE Alu 1 305 0 332 247 62 0 chr9 120624593 120624690 -21646754 + ORSL DNA AcHobo 170 272 -3 1120 211 14 0 chr9 120624775 120624988 -21646456 - MER20 DNA MER1_type 0 219 4 823 244 45 151 chr9 120625053 120625652 -21645792 + L2 LINE L2 2745 3296 -17 186 43 0 0 chr9 120625656 120625679 -21645765 + (AATTG)n Simple_repeat Simple_repeat 5 27 0 245 316 101 68 chr9 120626577 120626944 -21644500 + L2 LINE L2 2534 2912 -402 278 323 120 55 chr9 120626983 120627308 -21644136 - L3 LINE CR1 -104 1473 1128 263 326 11 0 chr9 120627711 120627800 -21643644 - L2 LINE L2 -256 3016 2927 180 0 0 0 chr9 120628244 120628264 -21643180 + (T)n Simple_repeat Simple_repeat 1 20 0 1500 212 12 6 chr9 120628775 120629105 -21642339 - MER58B DNA MER1_type 0 341 10 339 299 212 13 chr9 120629255 120629458 -21641986 - MIR SINE MIR -23 239 8 229 284 102 68 chr9 120629936 120630112 -21641332 + L3 LINE CR1 1178 1359 -218 260 230 5 17 chr9 120630341 120630406 -21641038 + MIR SINE MIR 80 137 -71 561 296 201 29 chr9 120630858 120631335 -21640109 + L3 LINE CR1 966 1524 -53 503 332 42 5 chr9 120631762 120631955 -21639489 + MIR SINE MIR 20 219 -43 313 338 23 7 chr9 120632021 120632161 -21639283 - MIR SINE MIR -80 128 12 188 163 0 20 chr9 120632520 120632569 -21638875 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 286 299 10 31 chr9 120632597 120632694 -21638750 + MIR SINE MIR 45 139 -69 21 36 0 0 chr9 120633028 120633056 -21638388 + AT_rich Low_complexity Low_complexity 1 28 0 185 139 23 0 chr9 120633080 120633123 -21638321 + T-rich Low_complexity Low_complexity 5 48 0 332 319 44 19 chr9 120634683 120634843 -21636601 + MIR SINE MIR 1 164 -98 310 290 64 66 chr9 120635652 120635904 -21635540 - MIR3 SINE MIR -1 261 8 346 299 35 62 chr9 120635992 120636136 -21635308 - MIR SINE MIR -111 151 12 479 256 0 51 chr9 120636934 120637017 -21634427 - L2 LINE L2 0 3313 3236 2627 168 12 2 chr9 120637017 120637439 -21634005 - MSTB LTR MaLR 0 426 1 479 256 0 51 chr9 120637439 120637472 -21633972 - L2 LINE L2 -77 3236 3203 263 342 21 31 chr9 120637505 120637698 -21633746 - L2 LINE L2 -270 3002 2812 224 217 0 0 chr9 120639241 120639287 -21632157 + CT-rich Low_complexity Low_complexity 2 47 0 342 317 149 25 chr9 120639369 120639585 -21631859 - MIR SINE MIR -14 248 6 316 243 0 112 chr9 120639836 120639896 -21631548 - L2 LINE L2 0 3313 3269 612 233 28 23 chr9 120639896 120640072 -21631372 - MER5B DNA MER1_type 0 178 2 316 243 0 112 chr9 120640072 120640118 -21631326 - L2 LINE L2 -44 3269 3219 255 311 68 0 chr9 120640393 120640467 -21630977 - L2 LINE L2 -46 3267 3189 288 274 19 98 chr9 120641156 120641353 -21630091 + MIR3 SINE MIR 35 215 -29 275 246 46 0 chr9 120642066 120642131 -21629313 - MIR SINE MIR -103 159 92 363 353 24 24 chr9 120642329 120642499 -21628945 + MLT1I LTR MaLR 126 295 -114 187 400 96 9 chr9 120642587 120642702 -21628742 - MIR SINE MIR -131 131 7 360 0 0 0 chr9 120642763 120642803 -21628641 + (CA)n Simple_repeat Simple_repeat 1 40 0 434 169 8 9 chr9 120642941 120643035 -21628409 - MER5A DNA MER1_type -92 97 4 215 273 15 30 chr9 120644326 120644404 -21627040 + CT-rich Low_complexity Low_complexity 4 133 0 3257 66 0 16 chr9 120644443 120644881 -21626563 - L1PA7 LINE L1 -1 6153 5723 270 370 0 0 chr9 120645052 120645133 -21626311 + MIR SINE MIR 20 100 -162 330 300 23 46 chr9 120645287 120645417 -21626027 - L2 LINE L2 -4 3309 3183 422 278 83 6 chr9 120645433 120645602 -21625842 + MER58C DNA MER1_type 26 207 -8 412 350 48 64 chr9 120645899 120646210 -21625234 + L2 LINE L2 2966 3271 -1 22 35 0 0 chr9 120646862 120646891 -21624553 + AT_rich Low_complexity Low_complexity 1 29 0 259 251 115 71 chr9 120646916 120647099 -21624345 - MIR3 SINE MIR -16 192 2 549 311 118 47 chr9 120647691 120648099 -21623345 + HAL1 LINE L1 638 1074 -1433 219 139 0 0 chr9 120648105 120648141 -21623303 + (TA)n Simple_repeat Simple_repeat 1 36 0 682 258 142 55 chr9 120648239 120648910 -21622534 + LTR41 LTR ERVL 6 764 -9 320 327 61 52 chr9 120649000 120649591 -21621853 + HAL1 LINE L1 1291 1886 -621 2103 123 0 7 chr9 120649704 120650004 -21621440 + AluSx SINE Alu 1 298 -14 341 270 62 80 chr9 120650209 120650435 -21621009 + HAL1 LINE L1 2286 2507 0 205 316 13 0 chr9 120650461 120650537 -21620907 + MIR SINE MIR 185 261 -1 296 254 35 21 chr9 120651522 120651664 -21619780 + (TA)n Simple_repeat Simple_repeat 2 145 0 212 312 65 0 chr9 120652750 120652827 -21618617 + L2 LINE L2 3172 3253 -19 295 348 43 0 chr9 120653336 120653474 -21617970 - MIR SINE MIR -19 243 100 258 266 76 49 chr9 120653870 120654012 -21617432 + MIR SINE MIR 42 185 -63 350 307 63 8 chr9 120654657 120654784 -21616660 + MIR SINE MIR 30 163 -99 26 0 0 0 chr9 120654870 120654896 -21616548 + AT_rich Low_complexity Low_complexity 1 26 0 642 300 22 22 chr9 120654914 120655141 -21616303 - MIR SINE MIR -34 228 2 364 99 28 0 chr9 120655617 120655688 -21615756 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 271 234 62 0 chr9 120655850 120655914 -21615530 + MER58A DNA MER1_type 1 68 -39 8228 203 33 9 chr9 120656158 120658141 -21613303 - L1PA16 LINE L1 -9 6157 4072 375 23 0 0 chr9 120658141 120658185 -21613259 + (CTATT)n Simple_repeat Simple_repeat 5 48 0 8228 203 33 9 chr9 120658185 120659249 -21612195 - L1PA16 LINE L1 -2094 4072 3035 741 241 0 0 chr9 120659266 120659432 -21612012 + MER58A DNA MER1_type 44 209 -15 289 176 0 0 chr9 120659479 120659530 -21611914 - LTR33A LTR ERVL 0 523 473 230 371 86 9 chr9 120660289 120660405 -21611039 + L2 LINE L2 3187 3311 -2 212 333 8 54 chr9 120660804 120660937 -21610507 + MIR SINE MIR 32 157 -63 22 56 0 0 chr9 120661952 120661988 -21609456 + AT_rich Low_complexity Low_complexity 1 36 0 230 333 69 21 chr9 120662470 120662614 -21608830 - L2 LINE L2 -718 2596 2446 213 269 0 0 chr9 120664375 120664427 -21607017 + (CA)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr9 120665152 120665175 -21606269 + AT_rich Low_complexity Low_complexity 1 23 0 421 283 53 0 chr9 120665790 120665903 -21605541 - MIR SINE MIR -70 138 20 206 118 0 0 chr9 120666758 120666792 -21604652 + (T)n Simple_repeat Simple_repeat 1 34 0 249 109 0 78 chr9 120666879 120666943 -21604501 - L1MA4A LINE L1 0 6303 6245 531 158 105 111 chr9 120667977 120668100 -21603344 + MER5A DNA MER1_type 1 124 -65 2084 105 3 17 chr9 120668100 120668395 -21603049 - AluSp SINE Alu -17 296 6 531 158 105 111 chr9 120668395 120668461 -21602983 + MER5A DNA MER1_type 124 189 0 245 352 49 22 chr9 120668682 120668827 -21602617 - MIR3 SINE MIR -67 141 4 450 321 12 0 chr9 120668905 120669067 -21602377 + MER117 DNA MER1_type 22 185 -12 243 128 26 13 chr9 120669299 120669377 -21602067 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 514 280 33 11 chr9 120670938 120671120 -21600324 + MER110-int LTR ERV1 4298 4483 -164 234 204 0 0 chr9 120671332 120671381 -21600063 + MER110 LTR ERV1 1 49 -442 2020 189 83 0 chr9 120671381 120671826 -21599618 + MER110 LTR ERV1 9 490 -1 209 294 184 71 chr9 120671900 120672335 -21599109 - L2 LINE L2 0 3313 2830 2231 94 3 3 chr9 120673092 120673391 -21598053 + AluY SINE Alu 1 299 -12 2051 175 5 22 chr9 120673635 120673955 -21597489 - MLT1A1 LTR MaLR 0 365 50 3430 69 2 9 chr9 120673955 120674402 -21597042 + MLT2A1 LTR ERVL 1 444 0 2051 175 5 22 chr9 120674402 120674452 -21596992 - MLT1A1 LTR MaLR -315 50 1 1012 299 98 34 chr9 120674452 120675348 -21596096 + L1MEd LINE L1 46 999 -5120 216 324 48 19 chr9 120675871 120675976 -21595468 - MIR SINE MIR -47 215 108 1834 122 0 0 chr9 120676005 120676282 -21595162 - AluSg SINE Alu 0 312 36 2523 55 0 3 chr9 120676288 120676596 -21594848 - AluY SINE Alu -4 307 1 2065 159 0 0 chr9 120677093 120677394 -21594050 + AluSx SINE Alu 1 301 -11 346 372 124 0 chr9 120677705 120677931 -21593513 - MIR SINE MIR -5 257 4 253 233 14 0 chr9 120678031 120678104 -21593340 + MER103 DNA DNA 89 162 -4 225 276 17 0 chr9 120679029 120679087 -21592357 - MIR3 SINE MIR 0 208 150 312 262 198 43 chr9 120679798 120679985 -21591459 + HAL1 LINE L1 825 1040 -1467 279 253 0 13 chr9 120680238 120680313 -21591131 + LTR16B LTR ERVL 85 158 -306 1036 194 22 9 chr9 120680788 120681020 -21590424 - MER46A DNA MER2_type -1 235 1 242 252 24 39 chr9 120681482 120681609 -21589835 + L1MEd LINE L1 2269 2393 -3736 28 48 0 0 chr9 120681785 120681827 -21589617 + AT_rich Low_complexity Low_complexity 1 42 0 32 75 0 0 chr9 120681963 120682030 -21589414 + AT_rich Low_complexity Low_complexity 1 67 0 255 299 181 28 chr9 120683205 120683349 -21588095 + MIR3 SINE MIR 20 185 -23 186 43 0 0 chr9 120683466 120683489 -21587955 + (CA)n Simple_repeat Simple_repeat 1 23 0 327 272 129 82 chr9 120683544 120683776 -21587668 - MIR SINE MIR -12 250 8 289 291 89 49 chr9 120684406 120684609 -21586835 - MIR SINE MIR 0 262 52 31 26 0 0 chr9 120685798 120685836 -21585608 + AT_rich Low_complexity Low_complexity 1 38 0 271 357 101 10 chr9 120685932 120686131 -21585313 + MIR SINE MIR 44 260 -2 340 279 126 0 chr9 120686189 120686300 -21585144 + L2 LINE L2 3189 3313 0 183 351 79 18 chr9 120686678 120686792 -21584652 - L2 LINE L2 -6 3307 3187 439 295 46 54 chr9 120687124 120687365 -21584079 - MIR SINE MIR -19 243 5 203 354 12 37 chr9 120687382 120687464 -21583980 + L2 LINE L2 3001 3080 -192 252 348 92 14 chr9 120687533 120687674 -21583770 + L2 LINE L2 3119 3270 -2 277 237 0 0 chr9 120688355 120688414 -21583030 - MER81 DNA DNA -36 78 20 238 314 48 38 chr9 120688535 120688640 -21582804 + MLT1H LTR MaLR 238 343 -206 573 297 31 66 chr9 120688747 120689033 -21582411 + L3 LINE CR1 1244 1519 -58 324 0 0 0 chr9 120689191 120689227 -21582217 + (TG)n Simple_repeat Simple_repeat 2 37 0 1263 277 50 65 chr9 120689518 120690185 -21581259 + MLT2F LTR ERVL 1 657 -6 200 303 20 81 chr9 120690236 120690335 -21581109 + MIR SINE MIR 2 94 -168 374 192 26 0 chr9 120690339 120690417 -21581027 + MLT1F1 LTR MaLR 1 80 -462 3635 117 123 118 chr9 120690422 120691807 -21579637 + pTR5 LTR ERV1 743 2438 0 745 241 94 13 chr9 120691825 120692199 -21579245 + MLT1F1 LTR MaLR 96 565 -2 337 289 30 37 chr9 120692243 120692378 -21579066 + MIR SINE MIR 120 253 -9 353 321 28 0 chr9 120693258 120693364 -21578080 + MIR SINE MIR 77 185 -77 258 222 28 14 chr9 120693771 120693843 -21577601 + Tigger5 DNA MER2_type 2251 2323 0 228 336 48 56 chr9 120693897 120694022 -21577422 - MIR SINE MIR -109 153 30 225 274 14 14 chr9 120694597 120694670 -21576774 + Tigger5 DNA MER2_type 2251 2323 0 1479 203 81 12 chr9 120694701 120695021 -21576423 - MER61A LTR ERV1 0 343 2 226 385 42 10 chr9 120695052 120695148 -21576296 - MIR SINE MIR -58 150 52 201 345 36 12 chr9 120695595 120695679 -21575765 + MIR SINE MIR 46 131 -131 478 322 23 29 chr9 120695905 120696065 -21575379 + MIR3 SINE MIR 12 172 -36 777 237 12 0 chr9 120696065 120696238 -21575206 + MER5B DNA MER1_type 4 178 0 2295 176 24 9 chr9 120696381 120696831 -21574613 - MLT1C LTR MaLR 0 467 11 337 339 148 25 chr9 120697860 120698137 -21573307 - L2 LINE L2 -9 3263 2953 182 387 72 21 chr9 120698176 120698370 -21573074 - L2 LINE L2 -405 2909 2706 2183 83 69 0 chr9 120699168 120699457 -21571987 + AluY SINE Alu 1 309 -2 209 33 33 0 chr9 120700066 120700096 -21571348 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 210 299 15 0 chr9 120700460 120700527 -21570917 + CT-rich Low_complexity Low_complexity 4 71 0 2561 154 5 16 chr9 120701003 120701117 -21570327 + MSTA LTR MaLR 5 119 -309 1887 126 79 25 chr9 120701117 120701473 -21569971 - THE1C LTR MaLR 0 375 1 2561 154 5 16 chr9 120701473 120701787 -21569657 + MSTA LTR MaLR 119 428 0 441 291 104 0 chr9 120702134 120702268 -21569176 - MIR3 SINE MIR -38 170 23 313 361 23 8 chr9 120702484 120702614 -21568830 + MIR3 SINE MIR 10 141 -67 902 264 79 49 chr9 120704475 120704906 -21566538 - LTR16B LTR ERVL -20 444 1 494 352 80 8 chr9 120707273 120707523 -21563921 - L3 LINE CR1 -2 1575 1308 363 299 60 22 chr9 120707551 120707735 -21563709 + MIR SINE MIR 64 254 -8 424 358 51 10 chr9 120708389 120708682 -21562762 + LTR16A LTR ERVL 71 375 -75 31 26 0 0 chr9 120710129 120710167 -21561277 + AT_rich Low_complexity Low_complexity 1 38 0 418 277 168 25 chr9 120710208 120710410 -21561034 + MIR SINE MIR 32 262 0 2198 106 3 0 chr9 120710556 120710849 -21560595 + AluSg SINE Alu 1 294 -16 204 302 0 0 chr9 120711156 120711209 -21560235 - L2 LINE L2 -24 3289 3237 349 345 102 11 chr9 120711310 120711487 -21559957 + MIR SINE MIR 63 255 -7 198 103 0 0 chr9 120712241 120712270 -21559174 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 266 347 101 58 chr9 120712591 120712989 -21558455 - L2 LINE L2 -358 2956 2542 351 302 0 0 chr9 120714205 120714301 -21557143 + MIR SINE MIR 57 152 -110 268 328 46 63 chr9 120714530 120714704 -21556740 - MIR SINE MIR -8 254 84 25 0 0 0 chr9 120714785 120714810 -21556634 + AT_rich Low_complexity Low_complexity 1 25 0 206 150 0 25 chr9 120715250 120715290 -21556154 + (TG)n Simple_repeat Simple_repeat 2 40 0 1965 128 0 0 chr9 120715487 120715799 -21555645 + AluSg SINE Alu 1 312 0 1276 116 0 5 chr9 120715845 120716043 -21555401 + L1PB1 LINE L1 5955 6151 0 1101 283 77 28 chr9 120716330 120716757 -21554687 + MLT1H LTR MaLR 102 549 0 390 260 40 0 chr9 120717449 120717599 -21553845 + (TA)n Simple_repeat Simple_repeat 2 157 0 24 32 0 0 chr9 120717616 120717647 -21553797 + AT_rich Low_complexity Low_complexity 1 31 0 242 340 32 0 chr9 120717683 120717777 -21553667 - MIR3 SINE MIR -54 154 58 814 267 57 27 chr9 120717986 120718319 -21553125 + MER2 DNA MER2_type 1 343 -1 1101 253 59 37 chr9 120718463 120718918 -21552526 - L1ME1 LINE L1 0 6164 5697 3753 163 24 104 chr9 120718918 120719919 -21551525 + Tigger1 DNA MER2_type 1 921 -1497 2918 142 36 0 chr9 120720110 120720610 -21550834 - Tigger1 DNA MER2_type -1465 953 436 811 174 48 0 chr9 120720789 120720956 -21550488 - Tigger1 DNA MER2_type -2054 364 190 545 121 0 0 chr9 120720966 120721049 -21550395 - MLT2A2 LTR ERVL -370 83 1 819 310 19 10 chr9 120721049 120721359 -21550085 - L1MCa LINE L1 -5506 539 227 1709 184 127 21 chr9 120721359 120721532 -21549912 + MSTA LTR MaLR 1 154 -274 1565 111 22 4 chr9 120721532 120721758 -21549686 + MER30 DNA MER1_type 1 230 0 1709 184 127 21 chr9 120721758 120721971 -21549473 + MSTA LTR MaLR 154 428 0 479 290 36 27 chr9 120721973 120722219 -21549225 - L1MCa LINE L1 -5816 320 3 2333 86 0 0 chr9 120722282 120722573 -21548871 + AluY SINE Alu 1 291 -20 180 366 0 0 chr9 120722693 120722764 -21548680 + L2 LINE L2 3242 3312 -1 242 306 123 12 chr9 120722896 120723066 -21548378 - MIR SINE MIR -11 251 63 190 262 0 0 chr9 120723615 120723657 -21547787 + MIR SINE MIR 2 43 -219 190 262 0 0 chr9 120724210 120724252 -21547192 - MIR SINE MIR -219 43 2 383 268 1 0 chr9 120724631 120724738 -21546706 - MLT1J1 LTR MaLR -328 122 15 381 278 0 0 chr9 120724746 120724836 -21546608 + MIR SINE MIR 173 262 0 322 329 51 32 chr9 120725032 120725190 -21546254 - MIR SINE MIR -90 172 12 1333 166 8 0 chr9 120725333 120725592 -21545852 - L1MA4A LINE L1 -1 6302 6042 460 317 30 25 chr9 120725625 120725824 -21545620 + L3 LINE CR1 1086 1285 -292 304 324 198 16 chr9 120726013 120726195 -21545249 + L3 LINE CR1 1351 1565 -12 383 315 12 42 chr9 120726757 120726925 -21544519 - MIR SINE MIR -56 206 45 537 214 97 13 chr9 120728209 120728384 -21543060 + MIR SINE MIR 73 262 0 249 298 44 19 chr9 120729005 120729163 -21542281 - L1P5 LINE L1 -610 5546 5385 249 324 91 7 chr9 120729269 120729544 -21541900 - L1M4 LINE L1 -891 5255 4958 21 0 0 0 chr9 120730236 120730257 -21541187 + AT_rich Low_complexity Low_complexity 1 21 0 772 302 36 8 chr9 120730278 120730526 -21540918 - MIR SINE MIR 0 262 8 627 317 27 9 chr9 120730566 120730791 -21540653 + MIR SINE MIR 32 260 -2 1648 152 0 0 chr9 120730895 120731138 -21540306 + AluJb SINE Alu 1 243 -69 188 250 31 16 chr9 120731290 120731354 -21540090 + MIR3 SINE MIR 133 197 -11 1836 185 0 22 chr9 120732175 120732489 -21538955 - AluJo SINE Alu -5 307 1 291 288 13 72 chr9 120732560 120732713 -21538731 - MIR3 SINE MIR -61 147 4 180 289 178 30 chr9 120733400 120733535 -21537909 - MER5A DNA MER1_type 0 189 35 275 261 115 61 chr9 120733682 120733847 -21537597 + MER5B DNA MER1_type 3 176 -2 197 289 0 0 chr9 120734582 120734627 -21536817 + L2 LINE L2 3258 3302 -11 349 254 64 29 chr9 120734641 120734814 -21536630 - L1MC4a LINE L1 -1902 5906 5728 274 180 67 56 chr9 120734817 120734906 -21536538 - L1MC4a LINE L1 -499 5622 5533 2303 163 39 11 chr9 120735608 120736050 -21535394 + L1MA9 LINE L1 5627 6080 -232 182 33 67 0 chr9 120736238 120736268 -21535176 + A-rich Low_complexity Low_complexity 3 34 0 191 315 11 22 chr9 120736342 120736431 -21535013 + MIR SINE MIR 163 250 -12 189 279 29 29 chr9 120736470 120736538 -21534906 + MIR SINE MIR 23 90 -118 23 0 0 0 chr9 120736564 120736587 -21534857 + AT_rich Low_complexity Low_complexity 1 23 0 454 307 45 29 chr9 120737091 120737335 -21534109 - MIR SINE MIR -2 260 13 204 267 0 0 chr9 120737454 120737499 -21533945 + (TA)n Simple_repeat Simple_repeat 2 46 0 551 162 7 29 chr9 120739502 120739638 -21531806 + CT-rich Low_complexity Low_complexity 1 133 0 391 275 155 27 chr9 120739773 120739918 -21531526 + L1MC4 LINE L1 6455 6580 -1462 1504 214 13 101 chr9 120739918 120740470 -21530974 - MLT1D LTR MaLR -2 503 1 391 275 155 27 chr9 120740470 120740582 -21530862 + L1MC4 LINE L1 6580 6745 -1297 385 349 8 0 chr9 120740590 120740716 -21530728 - LTR16A LTR ERVL -114 336 210 323 192 13 0 chr9 120740736 120740814 -21530630 + GA-rich Low_complexity Low_complexity 2 80 0 186 361 66 0 chr9 120741279 120741340 -21530104 + L2 LINE L2 3168 3232 -40 307 362 106 33 chr9 120741356 120741906 -21529538 + L2 LINE L2 2296 2885 -429 1938 159 116 35 chr9 120742179 120742397 -21529047 - MSTA LTR MaLR 0 428 229 2226 89 0 3 chr9 120742397 120742702 -21528742 - AluSg SINE Alu 0 304 1 1938 159 116 35 chr9 120742702 120742878 -21528566 - MSTA LTR MaLR -199 229 1 232 269 77 13 chr9 120742894 120742972 -21528472 + L2 LINE L2 3231 3313 0 229 320 62 31 chr9 120742965 120743062 -21528382 + MIR3 SINE MIR 8 107 -101 * 2155 315 121 45 chr9 120743155 120743900 -21527544 + L2 LINE L2 1441 2128 -1185 2374 83 3 3 chr9 120743900 120744201 -21527243 - AluSp SINE Alu -12 301 1 2155 315 121 45 chr9 120744201 120744955 -21526489 + L2 LINE L2 2128 3058 -255 477 328 53 33 chr9 120745325 120746023 -21525421 - L1M4 LINE L1 -749 5397 4686 326 305 57 0 chr9 120746175 120746352 -21525092 - L1M4 LINE L1 -1854 4292 4106 4480 171 26 52 chr9 120747386 120748316 -21523128 + L1MB3 LINE L1 17 922 -5462 1497 213 6 6 chr9 120748346 120748698 -21522746 - L1PB1 LINE L1 -1736 4410 4059 * 5607 176 11 2 chr9 120748690 120750426 -21521018 + L1PB1 LINE L1 4398 6151 0 4571 194 37 31 chr9 120750435 120750509 -21520935 + L1MB3 LINE L1 935 1007 -5375 436 0 33 17 chr9 120750509 120750569 -21520875 + (GAAA)n Simple_repeat Simple_repeat 3 63 0 4571 194 37 31 chr9 120750569 120750625 -21520819 + L1MB3 LINE L1 1007 1061 -5321 1109 166 166 73 chr9 120750625 120750968 -21520476 - THE1C LTR MaLR 0 375 1 4571 194 37 31 chr9 120750968 120753536 -21517908 + L1MB3 LINE L1 1061 3741 -2641 710 51 20 0 chr9 120753536 120753634 -21517810 + (GAAA)n Simple_repeat Simple_repeat 4 103 0 4571 194 37 31 chr9 120753634 120753750 -21517694 + L1MB3 LINE L1 3741 3855 -2527 4217 199 27 92 chr9 120753738 120754329 -21517115 + L1MB3 LINE L1 4387 5015 -1404 * 4003 147 16 46 chr9 120754329 120755127 -21516317 + L1MA4A LINE L1 5528 6301 -2 4217 199 27 92 chr9 120755127 120756701 -21514743 + L1MB3 LINE L1 5015 6417 -2 21 0 0 0 chr9 120757721 120757742 -21513702 + AT_rich Low_complexity Low_complexity 1 21 0 4199 224 27 73 chr9 120757766 120758096 -21513348 + L1MB3 LINE L1 4431 4775 -1408 3808 153 16 47 chr9 120758096 120758883 -21512561 + L1MA4A LINE L1 5539 6301 -2 4199 224 27 73 chr9 120758883 120760457 -21510987 + L1MB3 LINE L1 4775 6181 -2 201 319 54 54 chr9 120761410 120761576 -21509868 - MIR3 SINE MIR -28 180 15 757 281 0 0 chr9 120761650 120761828 -21509616 + MER45A DNA AcHobo 1 178 0 447 284 72 46 chr9 120762276 120762470 -21508974 + MIR SINE MIR 7 205 -57 253 226 76 13 chr9 120763224 120763333 -21508111 + MIR SINE MIR 81 206 -2 259 287 67 85 chr9 120765318 120765482 -21505962 + L2 LINE L2 3046 3206 -66 21 0 0 0 chr9 120765874 120765895 -21505549 + AT_rich Low_complexity Low_complexity 1 21 0 1683 202 0 10 chr9 120766265 120766562 -21504882 - AluJb SINE Alu -16 296 3 2279 104 3 3 chr9 120766615 120766923 -21504521 - AluSg SINE Alu -2 308 1 289 310 133 0 chr9 120766961 120767074 -21504370 + L2 LINE L2 3185 3312 -1 332 293 135 14 chr9 120767254 120767476 -21503968 - MIR SINE MIR -12 250 2 2287 112 0 0 chr9 120767703 120768006 -21503438 + AluSx SINE Alu 1 303 -9 227 53 0 26 chr9 120768243 120768281 -21503163 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 210 375 0 18 chr9 120768338 120768450 -21502994 - MIR SINE MIR -93 169 60 1403 74 32 105 chr9 120768551 120768836 -21502608 + L1P4 LINE L1 5261 5524 -639 1086 107 0 0 chr9 120768813 120768972 -21502472 + L1PA13 LINE L1 6005 6163 0 * 481 319 18 12 chr9 120770003 120770172 -21501272 + MER5B DNA MER1_type 8 177 -1 200 355 43 11 chr9 120770172 120770259 -21501185 + MIR3 SINE MIR 114 203 -5 207 0 0 0 chr9 120770819 120770842 -21500602 + (TTG)n Simple_repeat Simple_repeat 2 24 0 311 302 52 17 chr9 120771196 120771312 -21500132 + L2 LINE L2 3149 3268 -4 216 0 0 0 chr9 120771601 120771625 -21499819 + (A)n Simple_repeat Simple_repeat 1 24 0 218 256 99 16 chr9 120772966 120773087 -21498357 + L2 LINE L2 1938 2068 -1246 508 289 39 8 chr9 120773141 120773423 -21498021 + MLT1I LTR MaLR 86 406 -3 309 320 135 45 chr9 120774284 120774618 -21496826 + L3 LINE CR1 1170 1533 -44 2128 110 10 3 chr9 120775204 120775512 -21495932 - AluSg SINE Alu 0 310 1 320 338 140 0 chr9 120775749 120775906 -21495538 - MIR SINE MIR -12 250 72 1188 224 136 11 chr9 120776097 120776449 -21494995 - MSTD LTR MaLR 0 396 1 542 239 21 21 chr9 120776568 120776710 -21494734 + L2 LINE L2 3172 3313 0 280 322 6 27 chr9 120778049 120778232 -21493212 + CT-rich Low_complexity Low_complexity 2 180 0 2197 124 0 0 chr9 120778437 120778735 -21492709 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 120779933 120779954 -21491490 + (A)n Simple_repeat Simple_repeat 1 21 0 1973 132 3 50 chr9 120780633 120780952 -21490492 - AluSx SINE Alu -8 304 1 27 0 0 0 chr9 120780952 120780979 -21490465 + AT_rich Low_complexity Low_complexity 1 27 0 526 372 108 26 chr9 120781680 120782105 -21489339 + L2 LINE L2 2807 3266 -6 225 0 0 0 chr9 120782477 120782502 -21488942 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7403 37 0 0 chr9 120782502 120783700 -21487744 - L1PA3 LINE L1 -18 6137 4940 314 321 62 29 chr9 120783839 120784113 -21487331 + HAL1 LINE L1 229 511 -1996 380 320 126 34 chr9 120784171 120784346 -21487098 + HAL1 LINE L1 592 782 -1725 767 291 92 32 chr9 120784410 120784605 -21486839 + HAL1 LINE L1 876 1058 -1449 2381 96 3 0 chr9 120784605 120784908 -21486536 + AluSc SINE Alu 1 304 -5 767 291 92 32 chr9 120784908 120785114 -21486330 + HAL1 LINE L1 1058 1301 -1206 409 296 122 39 chr9 120785210 120785726 -21485718 + HAL1 LINE L1 1501 2059 -448 236 185 11 33 chr9 120785728 120785820 -21485624 + (TA)n Simple_repeat Simple_repeat 1 90 0 532 289 120 14 chr9 120785848 120786132 -21485312 + HAL1 LINE L1 2084 2397 -110 511 318 56 39 chr9 120786400 120786737 -21484707 + L1M4 LINE L1 2151 2493 -3653 238 290 58 14 chr9 120787668 120787737 -21483707 + MIR SINE MIR 54 125 -83 4743 54 5 0 chr9 120787788 120788376 -21483068 - LTR10C LTR ERV1 0 591 1 347 369 46 64 chr9 120788751 120789033 -21482411 + L2 LINE L2 2993 3269 -3 199 333 25 0 chr9 120790011 120790092 -21481352 + MIR SINE MIR 39 121 -87 371 272 73 24 chr9 120790377 120790583 -21480861 - L1MC5 LINE L1 -51 7910 7695 26 64 0 0 chr9 120790948 120790995 -21480449 + AT_rich Low_complexity Low_complexity 1 47 0 2204 109 3 0 chr9 120791088 120791382 -21480062 + AluSx SINE Alu 1 295 -17 369 58 0 0 chr9 120791383 120791435 -21480009 + (TA)n Simple_repeat Simple_repeat 2 53 0 11427 35 1 0 chr9 120791437 120793566 -21477878 - L1PA4 LINE L1 -17 6138 4008 344 80 0 0 chr9 120793567 120793617 -21477827 + L1P LINE L1 1078 1127 -5019 208 351 13 0 chr9 120794986 120795063 -21476381 - L3 LINE CR1 -90 1487 1410 459 299 180 41 chr9 120795327 120795882 -21475562 - L3 LINE CR1 -354 1223 592 463 342 138 29 chr9 120796247 120796934 -21474510 - L2 LINE L2 -94 3219 2458 612 233 13 20 chr9 120797460 120797610 -21473834 + L2 LINE L2 3111 3259 -54 299 258 61 0 chr9 120798937 120799003 -21472441 - L2 LINE L2 -33 3280 3211 492 141 99 68 chr9 120799421 120799612 -21471832 - Charlie5 DNA MER1_type -28 2584 2388 321 26 0 0 chr9 120800008 120800046 -21471398 + (CAGG)n Simple_repeat Simple_repeat 2 39 0 621 250 43 32 chr9 120801409 120801597 -21469847 + MIR SINE MIR 7 196 -66 692 301 56 29 chr9 120801628 120801970 -21469474 - MER21B LTR ERV1 -149 714 364 340 247 32 89 chr9 120802030 120802188 -21469256 - MER21B LTR ERV1 -691 172 24 370 222 170 37 chr9 120802252 120802387 -21469057 - MER58B DNA MER1_type 0 341 63 25 75 0 0 chr9 120802423 120802476 -21468968 + AT_rich Low_complexity Low_complexity 1 53 0 201 246 0 33 chr9 120802486 120802547 -21468897 + (TTA)n Simple_repeat Simple_repeat 1 59 0 250 357 16 71 chr9 120804105 120804287 -21467157 + L2 LINE L2 2912 3083 -189 216 0 0 0 chr9 120804438 120804462 -21466982 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2135 79 38 10 chr9 120804482 120804773 -21466671 - AluY SINE Alu -12 299 1 234 220 0 17 chr9 120805250 120805309 -21466135 + (TA)n Simple_repeat Simple_repeat 2 59 0 311 136 17 0 chr9 120805309 120805368 -21466076 + (CA)n Simple_repeat Simple_repeat 2 61 0 191 262 0 0 chr9 120805673 120805715 -21465729 + MIR SINE MIR 108 149 -113 541 257 87 16 chr9 120806409 120806592 -21464852 - MIR SINE MIR -16 246 51 392 320 122 0 chr9 120807492 120807648 -21463796 + MIR SINE MIR 76 250 -12 21 0 0 0 chr9 120807651 120807672 -21463772 + AT_rich Low_complexity Low_complexity 1 21 0 253 316 110 0 chr9 120808401 120808537 -21462907 + L2 LINE L2 2329 2479 -835 268 288 74 61 chr9 120808544 120808707 -21462737 - L2 LINE L2 -618 2696 2532 378 306 57 52 chr9 120808803 120808996 -21462448 + MIR SINE MIR 58 251 -11 24 53 0 0 chr9 120809009 120809047 -21462397 + AT_rich Low_complexity Low_complexity 1 38 0 225 94 0 0 chr9 120809236 120809268 -21462176 + (TG)n Simple_repeat Simple_repeat 2 33 0 210 231 0 0 chr9 120809788 120809827 -21461617 + MIR SINE MIR 57 95 -167 272 281 62 89 chr9 120809977 120810123 -21461321 - MIR SINE MIR -116 146 5 2139 111 3 13 chr9 120810240 120810538 -21460906 - AluSc SINE Alu -14 295 1 200 300 36 55 chr9 120810872 120810982 -21460462 + L2 LINE L2 2950 3057 -215 189 289 36 36 chr9 120811146 120811229 -21460215 + L2 LINE L2 3229 3311 -2 232 204 0 0 chr9 120811256 120811300 -21460144 - LTR16B LTR ERVL -14 450 407 341 316 7 0 chr9 120811409 120811545 -21459899 - LTR16B LTR ERVL -266 198 62 283 359 26 86 chr9 120811628 120811976 -21459468 - L2 LINE L2 0 3272 2946 1995 166 72 13 chr9 120812111 120812485 -21458959 - MSTD LTR MaLR 0 396 1 585 339 85 32 chr9 120812961 120813430 -21458014 + L2 LINE L2 2819 3312 -1 193 366 12 12 chr9 120814404 120814486 -21456958 + L2 LINE L2 3137 3218 -54 1228 174 14 11 chr9 120814916 120815272 -21456172 + L1MA7 LINE L1 5817 6279 -12 807 196 0 0 chr9 120815278 120815411 -21456033 - FLAM_C SINE Alu 0 133 1 31 0 0 0 chr9 120815412 120815443 -21456001 + AT_rich Low_complexity Low_complexity 1 31 0 276 222 14 0 chr9 120815444 120815516 -21455928 + L1PA8A LINE L1 5388 5460 -671 274 332 56 9 chr9 120815610 120815775 -21455669 - MIR SINE MIR -57 205 33 276 309 74 74 chr9 120816150 120816183 -21455261 + MIR3 SINE MIR 19 51 -157 2137 128 0 22 chr9 120816183 120816496 -21454948 + AluSx SINE Alu 1 306 -6 276 309 74 74 chr9 120816496 120816637 -21454807 + MIR3 SINE MIR 50 193 -15 846 225 15 5 chr9 120817236 120817436 -21454008 - MER3 DNA MER1_type -6 203 2 316 202 191 55 chr9 120818635 120818818 -21452626 - MLT1A1 LTR MaLR -157 208 1 * 357 286 113 20 chr9 120818818 120819019 -21452425 - MER69 DNA AcHobo -1003 223 4 22 0 0 0 chr9 120819121 120819143 -21452301 + AT_rich Low_complexity Low_complexity 1 22 0 803 233 9 47 chr9 120819208 120819423 -21452021 - MER3 DNA MER1_type 0 209 3 2083 114 3 31 chr9 120819585 120819902 -21451542 - AluSg SINE Alu -2 308 1 400 263 91 34 chr9 120820033 120820208 -21451236 - MIR SINE MIR -57 205 21 189 107 0 0 chr9 120821009 120821037 -21450407 + (CA)n Simple_repeat Simple_repeat 1 28 0 281 98 0 20 chr9 120821485 120821536 -21449908 + (TG)n Simple_repeat Simple_repeat 1 50 0 256 300 77 46 chr9 120822213 120822343 -21449101 - L2 LINE L2 0 3313 3180 183 398 41 18 chr9 120822549 120822770 -21448674 - L2 LINE L2 -550 2764 2539 206 0 0 65 chr9 120822863 120822894 -21448550 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1873 131 3 70 chr9 120823084 120823413 -21448031 - AluSx SINE Alu -5 307 1 449 327 23 9 chr9 120823449 120823663 -21447781 + LTR50 LTR ERVL 389 605 -190 282 270 97 32 chr9 120823636 120823821 -21447623 + LTR33A LTR ERVL 327 523 0 * 211 318 5 90 chr9 120824830 120825053 -21446391 - L2 LINE L2 -830 2484 2281 2247 89 3 0 chr9 120825173 120825465 -21445979 + AluY SINE Alu 1 293 -18 183 348 14 14 chr9 120826181 120826250 -21445194 + MIR3 SINE MIR 4 72 -136 261 397 40 23 chr9 120826420 120826594 -21444850 - MIR3 SINE MIR -17 191 15 366 80 0 0 chr9 120826595 120826645 -21444799 + (TTC)n Simple_repeat Simple_repeat 1 50 0 27 49 0 0 chr9 120827364 120827405 -21444039 + AT_rich Low_complexity Low_complexity 1 41 0 357 313 87 43 chr9 120827678 120827886 -21443558 - L1ME LINE L1 -509 5657 5441 29 0 0 0 chr9 120828603 120828632 -21442812 + AT_rich Low_complexity Low_complexity 1 29 0 252 241 145 92 chr9 120829082 120829289 -21442155 + MIR SINE MIR 45 262 0 2479 80 0 0 chr9 120829430 120829732 -21441712 + AluY SINE Alu 1 302 -9 2288 45 0 0 chr9 120830128 120830392 -21441052 + AluY SINE Alu 35 298 -13 908 182 13 0 chr9 120830534 120830688 -21440756 + FRAM SINE Alu 1 155 -21 396 0 0 0 chr9 120831947 120831991 -21439453 + (A)n Simple_repeat Simple_repeat 1 44 0 400 333 14 14 chr9 120832835 120832982 -21438462 + MIR SINE MIR 2 148 -114 1837 151 10 16 chr9 120833361 120833665 -21437779 + AluSx SINE Alu 1 302 -10 211 236 0 56 chr9 120833914 120833986 -21437458 + CT-rich Low_complexity Low_complexity 2 69 0 212 98 0 24 chr9 120834557 120834598 -21436846 + (GA)n Simple_repeat Simple_repeat 1 40 0 275 331 16 0 chr9 120834602 120834729 -21436715 + GA-rich Low_complexity Low_complexity 2 130 0 278 194 14 0 chr9 120834743 120834815 -21436629 + GA-rich Low_complexity Low_complexity 2 74 0 186 350 49 32 chr9 120835224 120835347 -21436097 + MIR3 SINE MIR 36 160 -48 1054 52 7 0 chr9 120835675 120835811 -21435633 - L1PA5 LINE L1 0 6154 6018 383 265 123 29 chr9 120835813 120835983 -21435461 - MER102b DNA MER1_type -12 329 144 345 327 28 9 chr9 120837009 120837116 -21434328 + L2 LINE L2 3142 3250 -22 200 348 17 42 chr9 120837355 120837473 -21433971 + MIR SINE MIR 33 147 -61 2237 127 8 30 chr9 120837484 120837855 -21433589 + THE1B LTR MaLR 1 363 -1 198 0 0 0 chr9 120837887 120837909 -21433535 + (T)n Simple_repeat Simple_repeat 1 22 0 1868 133 0 0 chr9 120837909 120838165 -21433279 - AluSx SINE Alu -56 256 1 440 316 68 11 chr9 120839708 120839885 -21431559 + MIR SINE MIR 51 237 -25 890 237 50 28 chr9 120840095 120840453 -21430991 - MER69 DNA AcHobo -214 2312 1947 727 249 17 17 chr9 120840449 120840628 -21430816 - MER69 DNA AcHobo -829 397 219 656 235 17 57 chr9 120840628 120840858 -21430586 - MLT1A1 LTR MaLR 0 365 145 189 295 57 48 chr9 120841027 120841132 -21430312 + MIR SINE MIR 47 152 -110 2441 70 0 0 chr9 120841218 120841520 -21429924 - AluY SINE Alu -9 302 1 276 238 0 32 chr9 120841876 120841939 -21429505 - MLT1K LTR MaLR -347 241 181 181 366 99 7 chr9 120842543 120842685 -21428759 + MIR3 SINE MIR 50 204 -4 216 330 59 8 chr9 120843429 120843547 -21427897 - MIR SINE MIR -66 196 73 181 221 29 0 chr9 120843555 120843623 -21427821 + (TA)n Simple_repeat Simple_repeat 2 71 0 252 59 0 0 chr9 120843665 120843699 -21427745 + (CA)n Simple_repeat Simple_repeat 1 34 0 266 275 88 0 chr9 120843738 120843818 -21427626 + L2 LINE L2 3168 3254 -18 242 380 70 68 chr9 120843996 120844351 -21427093 - L2 LINE L2 -1 3271 2916 286 163 20 0 chr9 120844449 120844498 -21426946 + MER5A DNA MER1_type 4 53 -136 740 258 0 7 chr9 120844503 120844658 -21426786 + MER96 DNA MER1_type? 22 175 0 251 342 58 11 chr9 120844974 120845164 -21426280 - L2 LINE L2 -803 2511 2313 183 167 0 0 chr9 120845425 120845455 -21425989 - MIR SINE MIR -102 160 131 526 316 73 0 chr9 120846446 120846623 -21424821 - MIR SINE MIR -13 249 60 22 35 0 0 chr9 120846726 120846755 -21424689 + AT_rich Low_complexity Low_complexity 1 29 0 232 380 13 20 chr9 120846910 120847060 -21424384 - L2 LINE L2 -189 3083 2935 405 271 8 39 chr9 120847520 120847649 -21423795 + L2 LINE L2 2932 3056 -216 186 43 0 0 chr9 120849189 120849212 -21422232 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 299 324 37 37 chr9 120849231 120849367 -21422077 + L2 LINE L2 2932 3067 -205 306 268 19 85 chr9 120850355 120850498 -21420946 - MIR SINE MIR -70 138 8 1007 248 112 16 chr9 120852179 120852606 -21418838 - MER110A LTR ERV1 0 468 1 209 359 19 0 chr9 120852611 120852714 -21418730 - L3 LINE CR1 -11 1566 1462 397 250 74 51 chr9 120853842 120854058 -21417386 + L1ME3A LINE L1 5538 5758 -363 1380 113 32 10 chr9 120854076 120854425 -21417019 + MSTA LTR MaLR 1 411 -17 263 296 39 13 chr9 120854438 120854630 -21416814 + L1ME3A LINE L1 5799 6118 -52 22 0 0 0 chr9 120854863 120854885 -21416559 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr9 120855418 120855442 -21416002 + (T)n Simple_repeat Simple_repeat 1 24 0 243 246 98 0 chr9 120855522 120855583 -21415861 + MER5A DNA MER1_type 123 189 0 2935 198 28 66 chr9 120855853 120856576 -21414868 - MER72 LTR ERV1 0 722 28 2068 126 38 44 chr9 120856953 120857318 -21414126 - THE1B LTR MaLR -1 363 1 486 271 56 84 chr9 120857532 120857570 -21413874 + MIR SINE MIR 1 39 -223 1773 144 67 67 chr9 120857570 120857973 -21413471 - MER57A LTR ERV1 0 403 1 486 271 56 84 chr9 120857973 120858185 -21413259 + MIR SINE MIR 39 244 -18 831 287 42 4 chr9 120858502 120858739 -21412705 - MIR SINE MIR -4 258 13 242 288 68 53 chr9 120859594 120859726 -21411718 + MIR SINE MIR 35 168 -94 289 312 21 11 chr9 120860092 120860185 -21411259 + L2 LINE L2 3143 3236 -36 1566 225 100 19 chr9 120860205 120860636 -21410808 + MER31B LTR ERV1 1 466 0 927 295 34 76 chr9 120861054 120861579 -21409865 - L2 LINE L2 -624 2690 2188 226 191 21 0 chr9 120861799 120861846 -21409598 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 3986 207 64 5 chr9 120861847 120862658 -21408786 - MER21B LTR ERV1 -4 859 1 333 330 50 39 chr9 120862687 120863056 -21408388 - L3 LINE CR1 -1 1576 1123 272 300 20 122 chr9 120865254 120865425 -21406019 - Charlie8 DNA MER1_type 0 1428 1241 1954 141 49 30 chr9 120865425 120865793 -21405651 + THE1C LTR MaLR 1 375 0 272 300 20 122 chr9 120865793 120865868 -21405576 - Charlie8 DNA MER1_type -187 1241 109 377 349 21 10 chr9 120865992 120866184 -21405260 - MER117 DNA MER1_type 0 197 4 391 297 14 0 chr9 120866330 120866468 -21404976 - MIR SINE MIR -56 206 67 27 29 0 0 chr9 120866499 120866533 -21404911 + AT_rich Low_complexity Low_complexity 1 34 0 215 218 0 18 chr9 120868146 120868201 -21403243 + (TCCA)n Simple_repeat Simple_repeat 4 57 0 804 11 0 0 chr9 120868344 120868439 -21403005 + L1PA2 LINE L1 6061 6155 0 299 318 47 47 chr9 120868443 120868572 -21402872 - MER5B DNA MER1_type -48 130 2 6600 86 4 8 chr9 120868704 120869996 -21401448 + L1PA8 LINE L1 4880 6169 -3 756 269 78 25 chr9 120870073 120870522 -21400922 + L1MC5 LINE L1 7289 7761 -200 198 0 0 0 chr9 120870553 120870575 -21400869 + (TA)n Simple_repeat Simple_repeat 2 23 0 263 182 39 26 chr9 120870587 120870664 -21400780 + L1MC5 LINE L1 7836 7913 -48 248 330 43 91 chr9 120870804 120871156 -21400288 + L2 LINE L2 2419 2753 -561 559 201 0 79 chr9 120871181 120871320 -21400124 - FLAM_A SINE Alu -4 129 2 219 273 86 0 chr9 120872026 120872111 -21399333 + MIR3 SINE MIR 63 154 -54 546 273 156 22 chr9 120873003 120873234 -21398210 + MIR SINE MIR 1 262 0 213 313 122 17 chr9 120873327 120873442 -21398002 + L2 LINE L2 3146 3272 0 530 310 99 57 chr9 120873519 120873851 -21397593 - L3 LINE CR1 -75 1502 1157 1463 106 0 0 chr9 120873884 120874091 -21397353 - L1PA13 LINE L1 -1 6162 5956 367 267 23 8 chr9 120874235 120874366 -21397078 + MER103 DNA DNA 27 159 -7 5199 193 51 63 chr9 120874508 120875384 -21396060 - L1MC3 LINE L1 0 7785 6929 225 94 0 0 chr9 120875384 120875416 -21396028 + (TG)n Simple_repeat Simple_repeat 2 33 0 5199 193 51 63 chr9 120875416 120875928 -21395516 - L1MC3 LINE L1 -856 6929 6413 6470 102 18 8 chr9 120875931 120876901 -21394543 - L1PBa LINE L1 -4588 2275 1297 201 295 39 13 chr9 120876940 120877018 -21394426 - L3 LINE CR1 -118 1459 1380 352 221 32 8 chr9 120878785 120878887 -21392557 - MIR3 SINE MIR -25 183 100 767 266 9 28 chr9 120879241 120879455 -21391989 + MER63A DNA MER1_type 1 210 0 1732 224 81 40 chr9 120880034 120880119 -21391325 - MLT1E3 LTR MaLR -108 516 436 198 0 0 0 chr9 120880119 120880141 -21391303 + (CA)n Simple_repeat Simple_repeat 2 23 0 1732 224 81 40 chr9 120880141 120880551 -21390893 - MLT1E3 LTR MaLR -188 436 1 445 306 136 33 chr9 120880555 120880885 -21390559 + L2 LINE L2 2946 3309 -4 498 273 162 8 chr9 120881084 120881443 -21390001 - L1MC5 LINE L1 -48 7913 7500 23 33 0 0 chr9 120881735 120881765 -21389679 + AT_rich Low_complexity Low_complexity 1 30 0 239 263 0 0 chr9 120881778 120881835 -21389609 + L1MC4 LINE L1 6648 6704 -1338 4417 174 24 69 chr9 120882077 120882577 -21388867 - L1MA9 LINE L1 -1 7271 6750 270 0 0 0 chr9 120882577 120882607 -21388837 + (TA)n Simple_repeat Simple_repeat 1 30 0 4417 174 24 69 chr9 120882607 120883296 -21388148 - L1MA9 LINE L1 -522 6750 6135 367 319 19 63 chr9 120883384 120883763 -21387681 - L1MC4a LINE L1 -1735 6073 5712 1754 177 0 13 chr9 120883832 120884137 -21387307 - AluJo SINE Alu -10 302 2 3514 234 39 10 chr9 120885791 120886981 -21384463 - L1MA9 LINE L1 -2359 4747 3471 7253 233 83 40 chr9 120886993 120890474 -21380970 - L1MA9 LINE L1 -3786 3320 7 8173 41 5 0 chr9 120890528 120891551 -21379893 - L1P LINE L1 -755 5391 4364 5113 40 0 2 chr9 120891551 120892165 -21379279 + L1PA5 LINE L1 5528 6143 -11 294 50 0 0 chr9 120892166 120892206 -21379238 + (TA)n Simple_repeat Simple_repeat 2 41 0 525 227 14 50 chr9 120892826 120892967 -21378477 + MIR SINE MIR 53 188 -74 290 296 19 28 chr9 120893122 120893230 -21378214 - MIR SINE MIR -111 151 45 290 270 180 0 chr9 120893443 120893532 -21377912 - MIR SINE MIR -153 109 5 181 209 93 0 chr9 120893731 120893774 -21377670 + L2 LINE L2 3263 3309 -4 223 204 0 20 chr9 120894379 120894428 -21377016 + GA-rich Low_complexity Low_complexity 4 51 0 576 174 130 0 chr9 120894942 120895057 -21376387 + FLAM_A SINE Alu 4 133 0 326 346 60 86 chr9 120895094 120895444 -21376000 - L2 LINE L2 0 3272 2932 423 313 136 42 chr9 120895835 120896100 -21375344 - MER77 LTR ERV1 -173 432 143 414 215 149 8 chr9 120896110 120896231 -21375213 - MER77 LTR ERV1 -396 209 72 2424 50 0 0 chr9 120896401 120896698 -21374746 + AluY SINE Alu 1 297 -14 195 353 95 9 chr9 120896839 120896955 -21374489 - L2 LINE L2 -4 3309 3184 239 155 17 17 chr9 120897371 120897429 -21374015 - L1MC4 LINE L1 0 8042 7985 215 345 62 35 chr9 120898043 120898188 -21373256 - L2 LINE L2 -25 3288 3140 261 329 102 0 chr9 120898239 120898376 -21373068 - L2 LINE L2 -260 3012 2862 215 267 107 61 chr9 120898430 120898561 -21372883 - L2 LINE L2 -722 2592 2456 269 308 88 50 chr9 120898983 120899165 -21372279 - MLT1J2 LTR MaLR -6 444 256 1252 121 226 46 chr9 120899248 120899514 -21371930 + MER46B DNA MER2_type 1 205 -2526 1893 150 3 0 chr9 120899514 120899800 -21371644 - AluJb SINE Alu -22 290 4 1252 121 226 46 chr9 120899800 120899839 -21371605 + MER46B DNA MER2_type 205 236 0 189 0 0 0 chr9 120900541 120900562 -21370882 + (TC)n Simple_repeat Simple_repeat 2 22 0 232 186 14 14 chr9 120900562 120900632 -21370812 + (TA)n Simple_repeat Simple_repeat 2 71 0 1629 282 82 15 chr9 120900669 120901542 -21369902 - L1ME1 LINE L1 -18 6217 5282 31 88 0 0 chr9 120901549 120901629 -21369815 + AT_rich Low_complexity Low_complexity 1 80 0 1502 253 81 41 chr9 120901759 120902525 -21368919 - L1ME1 LINE L1 -66 6169 5392 753 311 56 35 chr9 120902584 120903012 -21368432 - L1ME1 LINE L1 -5923 473 37 299 327 56 0 chr9 120903022 120903184 -21368260 - L1ME1 LINE L1 -1981 4234 4064 1397 289 64 35 chr9 120903285 120904267 -21367177 - L1ME1 LINE L1 -2437 3778 2768 * 4442 231 16 5 chr9 120904241 120905334 -21366110 - L1 LINE L1 -943 5272 4168 5416 119 29 6 chr9 120905338 120905970 -21365474 + L1PB1 LINE L1 5139 5755 -396 518 0 16 0 chr9 120905970 120906032 -21365412 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 324 0 0 0 chr9 120906032 120906068 -21365376 + (CA)n Simple_repeat Simple_repeat 2 37 0 5416 119 29 6 chr9 120906068 120906423 -21365021 + L1PB1 LINE L1 5754 6147 -4 186 43 0 0 chr9 120906520 120906543 -21364901 + (TA)n Simple_repeat Simple_repeat 1 23 0 2143 123 0 0 chr9 120906543 120906834 -21364610 - AluSc SINE Alu -15 294 1 1410 288 69 65 chr9 120906869 120908140 -21363304 - L1ME1 LINE L1 -3582 2633 1369 279 0 0 0 chr9 120908140 120908171 -21363273 + (TG)n Simple_repeat Simple_repeat 2 32 0 1410 288 69 65 chr9 120908171 120909530 -21361914 - L1ME1 LINE L1 -4846 1369 41 225 379 113 8 chr9 120909850 120909974 -21361470 - MIR3 SINE MIR -14 194 58 342 45 0 0 chr9 120910462 120910506 -21360938 + (CA)n Simple_repeat Simple_repeat 2 45 0 1715 204 37 8 chr9 120911454 120911806 -21359638 + MLT1A1 LTR MaLR 4 365 0 670 185 23 0 chr9 120912329 120912459 -21358985 - FRAM SINE Alu -25 151 19 1581 229 6 0 chr9 120912460 120912774 -21358670 + MLT1A1 LTR MaLR 48 363 -2 250 253 20 0 chr9 120912775 120912874 -21358570 + (TA)n Simple_repeat Simple_repeat 2 102 0 247 292 140 24 chr9 120913564 120913814 -21357630 + LTR16A1 LTR ERVL 179 457 0 2109 115 3 7 chr9 120914762 120915058 -21356386 + AluSq SINE Alu 2 296 -17 628 307 119 53 chr9 120915069 120916381 -21355063 + L1MEc LINE L1 39 1285 -4932 180 0 0 0 chr9 120916384 120916404 -21355040 + (TA)n Simple_repeat Simple_repeat 1 20 0 412 271 45 53 chr9 120916668 120916954 -21354490 + L1ME LINE L1 715 950 -5334 461 308 53 35 chr9 120917100 120917167 -21354277 + L1ME LINE L1 1250 1314 -5249 3455 100 0 70 chr9 120917167 120917755 -21353689 - L1PA13 LINE L1 -3 6160 5614 461 308 53 35 chr9 120917755 120918499 -21352945 + L1ME LINE L1 1314 2217 -4346 1271 256 102 34 chr9 120918700 120919375 -21352069 + L1ME LINE L1 4580 5300 -1082 496 305 127 70 chr9 120919386 120919842 -21351602 + MLT1F1 LTR MaLR 1 507 -60 328 205 64 0 chr9 120919877 120919955 -21351489 + MLT1F1 LTR MaLR 485 567 0 332 224 103 9 chr9 120919969 120920085 -21351359 + L1ME LINE L1 5326 5452 -930 419 237 72 33 chr9 120920090 120920242 -21351202 + L1ME2 LINE L1 5424 5581 -581 1818 146 8 0 chr9 120920243 120920504 -21350940 + AluSx SINE Alu 1 263 -49 1222 247 63 48 chr9 120920534 120920976 -21350468 + MLT1C LTR MaLR 17 465 -2 1572 225 106 37 chr9 120920979 120921170 -21350274 + L1ME2 LINE L1 5634 5810 -354 189 0 0 0 chr9 120921170 120921191 -21350253 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1572 225 106 37 chr9 120921191 120921488 -21349956 + L1ME2 LINE L1 5810 6156 -8 2029 110 28 0 chr9 120921995 120922286 -21349158 - AluSc SINE Alu -6 303 5 361 307 44 34 chr9 120923094 120923299 -21348145 + MIR SINE MIR 8 214 -48 586 305 47 44 chr9 120923574 120923872 -21347572 - L2 LINE L2 -4 3309 3011 334 80 80 0 chr9 120923960 120924010 -21347434 - MLT2A2 LTR ERVL 0 453 400 258 156 0 0 chr9 120924013 120924058 -21347386 + (TA)n Simple_repeat Simple_repeat 1 45 0 2774 80 46 8 chr9 120924058 120924465 -21346979 - MLT2A2 LTR ERVL -40 475 1 2167 107 20 0 chr9 120924495 120924794 -21346650 - AluSc SINE Alu -1 308 4 283 288 0 0 chr9 120924841 120924907 -21346537 - MLT1J2 LTR MaLR -126 324 259 274 143 0 20 chr9 120925008 120925057 -21346387 + L1ME LINE L1 5629 5676 -724 1596 146 27 76 chr9 120925057 120925175 -21346269 + AluJb SINE Alu 1 123 -189 2396 87 0 0 chr9 120925175 120925485 -21345959 + AluSg SINE Alu 1 310 0 1596 146 27 76 chr9 120925485 120925667 -21345777 + AluJb SINE Alu 123 286 -26 2331 115 0 0 chr9 120925727 120926039 -21345405 + AluSx SINE Alu 1 312 0 360 0 0 0 chr9 120926041 120926081 -21345363 + (TA)n Simple_repeat Simple_repeat 2 41 0 5341 112 40 6 chr9 120926501 120927316 -21344128 - L1PA11 LINE L1 0 6174 5332 2224 132 25 0 chr9 120927491 120927846 -21343598 + THE1B LTR MaLR 1 364 0 1214 307 46 14 chr9 120927900 120928314 -21343130 - LTR16C LTR ERVL 0 491 65 673 245 0 0 chr9 120928355 120928502 -21342942 + MIR SINE MIR 82 228 -34 195 352 19 19 chr9 120928566 120928671 -21342773 - L2 LINE L2 -334 2938 2834 394 344 83 18 chr9 120929287 120929505 -21341939 + L2 LINE L2 1297 1528 -1786 893 328 120 32 chr9 120929511 120929771 -21341673 + L2 LINE L2 2376 2612 -701 1016 218 5 9 chr9 120929771 120929991 -21341453 + MER20 DNA MER1_type 1 219 0 893 328 120 32 chr9 120929991 120930362 -21341082 + L2 LINE L2 2612 3063 -250 2124 188 5 13 chr9 120930420 120930808 -21340636 + MLT1B LTR MaLR 1 385 -5 484 57 129 0 chr9 120930808 120930878 -21340566 + MADE1 DNA Mariner 1 79 -1 311 215 31 77 chr9 120930883 120931013 -21340431 + L2 LINE L2 3126 3249 -64 287 294 28 77 chr9 120931033 120931176 -21340268 - MIR3 SINE MIR -54 154 19 215 261 0 0 chr9 120931400 120931469 -21339975 + C-rich Low_complexity Low_complexity 1 69 0 21 57 0 0 chr9 120931911 120931946 -21339498 + AT_rich Low_complexity Low_complexity 1 35 0 2167 131 0 0 chr9 120932670 120932976 -21338468 - AluSq SINE Alu -7 306 1 183 194 28 0 chr9 120932987 120933023 -21338421 - MIR SINE MIR 0 262 226 40 37 0 0 chr9 120933127 120933181 -21338263 + AT_rich Low_complexity Low_complexity 1 54 0 2099 256 42 4 chr9 120933299 120933843 -21337601 - ERVL-F LTR ERVL -264 5500 4936 526 264 52 0 chr9 120933840 120933995 -21337449 - ERVL-F LTR ERVL -4761 1003 841 * 1071 303 65 54 chr9 120934018 120934649 -21336795 - ERVL-F LTR ERVL -5068 696 59 1995 234 62 9 chr9 120934697 120935284 -21336160 - MLT2F LTR ERVL 0 663 1 2178 101 9 31 chr9 120935638 120935956 -21335488 - AluSx SINE Alu -1 311 1 1948 127 0 7 chr9 120937129 120937465 -21333979 - AluSx SINE Alu 0 334 1 204 97 0 0 chr9 120937574 120937605 -21333839 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 324 0 59 chr9 120937724 120937826 -21333618 - MIR SINE MIR -71 191 96 240 316 30 53 chr9 120938325 120938458 -21332986 + L3 LINE CR1 321 450 -1127 24 0 0 0 chr9 120938584 120938608 -21332836 + AT_rich Low_complexity Low_complexity 1 24 0 1645 198 3 14 chr9 120938704 120938997 -21332447 + AluJb SINE Alu 1 290 -22 835 285 122 43 chr9 120939258 120939773 -21331671 + MLT1G LTR MaLR 29 584 -6 207 290 140 0 chr9 120939798 120939898 -21331546 + MIR SINE MIR 121 234 -28 3249 164 13 73 chr9 120940045 120940740 -21330704 - MER39B LTR ERV1 0 653 1 2232 113 0 0 chr9 120942012 120942312 -21329132 + AluSg SINE Alu 1 300 -10 580 135 0 10 chr9 120943218 120943314 -21328130 - L1PA13 LINE L1 -347 5816 5722 2196 96 31 0 chr9 120943314 120943624 -21327820 + L1PA13 LINE L1 5827 6160 -3 205 333 129 8 chr9 120943701 120943833 -21327611 - MIR3 SINE MIR -7 201 54 258 241 0 0 chr9 120945352 120945410 -21326034 - MIR3 SINE MIR -3 205 148 183 286 82 0 chr9 120945462 120945511 -21325933 - L3 LINE CR1 -2 1575 1523 284 350 134 18 chr9 120945976 120946199 -21325245 - MIR SINE MIR 0 262 14 333 327 53 0 chr9 120946201 120946314 -21325130 - MIR SINE MIR -28 234 116 27 49 0 0 chr9 120946435 120946476 -21324968 + AT_rich Low_complexity Low_complexity 1 41 0 181 359 90 0 chr9 120947953 120948031 -21323413 + MIR SINE MIR 6 90 -172 194 294 35 12 chr9 120948255 120948340 -21323104 + MIR SINE MIR 120 206 -56 13635 93 32 1 chr9 120948570 120950608 -21320836 + L1P LINE L1 2970 5069 -1077 25 31 0 0 chr9 120951041 120951073 -21320371 + AT_rich Low_complexity Low_complexity 1 32 0 1219 147 118 0 chr9 120951519 120951730 -21319714 + MER46A DNA MER2_type 1 236 0 236 231 165 74 chr9 120951795 120951916 -21319528 - MIR3 SINE MIR -71 137 6 1384 213 55 47 chr9 120953499 120953861 -21317583 - MLT1A1 LTR MaLR 0 365 1 202 182 18 18 chr9 120954198 120954253 -21317191 + (TAA)n Simple_repeat Simple_repeat 2 56 0 264 236 121 28 chr9 120954561 120954743 -21316701 + L1ME3A LINE L1 2148 2346 -4050 648 301 29 43 chr9 120954871 120955286 -21316158 + L1ME3A LINE L1 2583 2991 -3224 1277 220 3 53 chr9 120955352 120955644 -21315800 + AluJo SINE Alu 1 306 4 231 36 0 0 chr9 120955644 120955672 -21315772 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2294 110 0 0 chr9 120955675 120955983 -21315461 + AluSx SINE Alu 1 308 -4 1277 220 3 53 chr9 120955983 120956004 -21315440 + AluJo SINE Alu 281 302 0 1651 292 88 24 chr9 120956022 120956700 -21314744 + L1ME3A LINE L1 4630 5263 -976 220 27 54 0 chr9 120956700 120956737 -21314707 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1651 292 88 24 chr9 120956737 120957557 -21313887 + L1ME3A LINE L1 5263 6231 -8 21 0 0 0 chr9 120957810 120957831 -21313613 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 120957863 120957885 -21313559 + AT_rich Low_complexity Low_complexity 1 22 0 189 326 70 70 chr9 120958197 120958283 -21313161 + L2 LINE L2 2983 3068 -204 7063 57 26 0 chr9 120958326 120959200 -21312244 - MER11D LTR ERVK 0 897 1 298 320 61 27 chr9 120959207 120959354 -21312090 + L2 LINE L2 3122 3273 -40 760 241 13 53 chr9 120959616 120959844 -21311600 - MER20 DNA MER1_type 0 219 1 310 379 40 23 chr9 120960836 120961013 -21310431 + L2 LINE L2 2560 2739 -575 244 316 79 43 chr9 120961482 120961621 -21309823 + L2 LINE L2 3129 3272 0 1171 200 91 15 chr9 120961632 120961913 -21309531 + MER61B LTR ERV1 1 396 -29 340 323 8 8 chr9 120962084 120962214 -21309230 + CT-rich Low_complexity Low_complexity 1 130 0 450 291 168 48 chr9 120962218 120962630 -21308814 - L2 LINE L2 -2 3311 2851 431 312 72 36 chr9 120962823 120962861 -21308583 + MLT1L LTR MaLR 116 151 -464 415 303 76 20 chr9 120962861 120963059 -21308385 + MER63A DNA MER1_type 2 210 0 431 312 72 36 chr9 120963059 120963270 -21308174 + MLT1L LTR MaLR 151 374 -241 228 339 24 32 chr9 120963417 120963541 -21307903 - MIR3 SINE MIR -41 167 45 707 222 12 0 chr9 120963668 120963835 -21307609 + L1PA16 LINE L1 5998 6166 0 1211 283 28 30 chr9 120964053 120964555 -21306889 - L1ME3A LINE L1 -2 6168 5668 267 233 0 0 chr9 120964557 120964617 -21306827 + Tigger1 DNA MER2_type 1 60 -2358 15820 29 2 2 chr9 120964651 120967305 -21304139 - L1PA4 LINE L1 -3 6152 3501 1361 166 21 0 chr9 120967305 120967532 -21303912 + Tigger1 DNA MER2_type 47 278 -2140 1918 194 35 30 chr9 120967532 120968078 -21303366 + MLT2A2 LTR ERVL 1 553 -1 7325 137 13 21 chr9 120968080 120969284 -21302160 + Tigger1 DNA MER2_type 283 1477 -941 5431 247 33 12 chr9 120969291 120971814 -21299630 + L1PBa LINE L1 3 1643 -5220 5338 147 25 13 chr9 120971814 120972752 -21298692 + Tigger1 DNA MER2_type 1465 2413 -5 359 266 55 0 chr9 120972753 120972862 -21298582 - L1ME3A LINE L1 -501 5669 5555 * 1136 214 53 8 chr9 120972846 120973108 -21298336 - L1MC2 LINE L1 -291 6053 5780 494 258 28 52 chr9 120973110 120973362 -21298082 - L1MCb LINE L1 -3653 2911 2666 912 327 23 10 chr9 120973371 120973759 -21297685 - L1MCb LINE L1 -5652 393 1 239 227 18 55 chr9 120973780 120973890 -21297554 + T-rich Low_complexity Low_complexity 2 107 0 23 54 0 0 chr9 120974254 120974291 -21297153 + AT_rich Low_complexity Low_complexity 1 37 0 203 422 16 8 chr9 120974385 120974513 -21296931 - MIR SINE MIR -63 145 17 557 326 194 7 chr9 120974785 120975208 -21296236 + L2 LINE L2 2236 2737 -577 186 336 149 0 chr9 120975294 120975401 -21296043 + L2 LINE L2 3150 3272 0 287 322 99 8 chr9 120976222 120976343 -21295101 - MER102b DNA MER1_type -1 340 209 213 300 25 25 chr9 120976842 120976922 -21294522 - MIR SINE MIR -104 104 25 293 285 119 52 chr9 120977135 120977328 -21294116 + MIR SINE MIR 1 206 -56 405 0 0 0 chr9 120977981 120978026 -21293418 + (CA)n Simple_repeat Simple_repeat 2 46 0 492 301 43 53 chr9 120978144 120978353 -21293091 + MIR SINE MIR 40 246 -16 2386 61 10 7 chr9 120978353 120978646 -21292798 + AluSp SINE Alu 1 294 -19 228 409 5 48 chr9 120978696 120978882 -21292562 - MIR SINE MIR -65 197 20 34 55 0 0 chr9 120979172 120979227 -21292217 + AT_rich Low_complexity Low_complexity 1 55 0 1196 261 130 26 chr9 120979341 120979697 -21291747 + L1ME1 LINE L1 5296 5614 -552 381 22 0 0 chr9 120979697 120979743 -21291701 + (CA)n Simple_repeat Simple_repeat 2 47 0 1196 261 130 26 chr9 120979743 120980048 -21291396 + L1ME1 LINE L1 5614 6025 -141 262 159 102 34 chr9 120980054 120980142 -21291302 - MER53 DNA DNA -88 101 8 290 149 0 0 chr9 120980151 120980198 -21291246 + L1ME3 LINE L1 6016 6062 -100 22 0 0 0 chr9 120980289 120980311 -21291133 + AT_rich Low_complexity Low_complexity 1 22 0 2011 107 7 0 chr9 120980593 120980865 -21290579 + AluSq SINE Alu 34 307 -6 274 333 0 0 chr9 120981359 120981452 -21289992 - MIR SINE MIR -121 141 49 207 377 38 31 chr9 120981721 120981880 -21289564 + L3 LINE CR1 1178 1337 -240 552 290 118 0 chr9 120981887 120982108 -21289336 + MIR SINE MIR 5 251 -11 229 333 0 35 chr9 120982151 120982265 -21289179 + CT-rich Low_complexity Low_complexity 2 111 0 265 316 0 0 chr9 120982739 120982815 -21288629 + MER69 DNA AcHobo 174 249 -977 417 340 0 14 chr9 120983220 120983364 -21288080 + MIR SINE MIR 7 148 -114 2473 81 3 0 chr9 120983488 120983796 -21287648 + AluSp SINE Alu 1 309 -4 262 344 86 19 chr9 120985235 120985467 -21285977 + MIR SINE MIR 19 260 -2 926 220 0 0 chr9 120985531 120985699 -21285745 - AluJb SINE Alu -8 304 137 526 293 113 5 chr9 120985776 120985988 -21285456 - MIR SINE MIR -25 237 3 519 238 24 55 chr9 120986187 120986351 -21285093 - MLT1I LTR MaLR -2 407 249 225 0 0 0 chr9 120986383 120986408 -21285036 + (TG)n Simple_repeat Simple_repeat 2 26 0 1628 116 37 35 chr9 120986432 120986755 -21284689 - L1PA13 LINE L1 0 6172 5886 285 257 28 69 chr9 120986789 120986919 -21284525 - MLT1I LTR MaLR -206 203 81 448 282 0 57 chr9 120986995 120987119 -21284325 + L2 LINE L2 3191 3307 -6 1003 101 5 28 chr9 120987544 120987762 -21283682 + (TTCC)n Simple_repeat Simple_repeat 1 213 0 22 0 0 0 chr9 120988131 120988153 -21283291 + AT_rich Low_complexity Low_complexity 1 22 0 235 333 0 0 chr9 120988313 120988394 -21283050 + MIR SINE MIR 174 254 -8 684 196 0 23 chr9 120988646 120988779 -21282665 - FLAM_C SINE Alu -2 141 12 473 318 88 9 chr9 120988847 120989064 -21282380 - MLT1J LTR MaLR -138 373 140 286 297 99 0 chr9 120989222 120989323 -21282121 - L2 LINE L2 0 3272 3162 237 280 53 0 chr9 120989723 120989798 -21281646 + MLT1I LTR MaLR 71 149 -260 294 163 244 0 chr9 120989949 120990035 -21281409 + MLT1I LTR MaLR 278 384 -25 575 294 78 94 chr9 120990339 120990734 -21280710 + MLT1K LTR MaLR 88 476 -112 228 354 26 9 chr9 120992086 120992199 -21279245 - MIR SINE MIR -14 248 134 709 305 110 54 chr9 120992222 120992684 -21278760 - MLT1H1 LTR MaLR 0 555 68 610 320 104 39 chr9 120992899 120993283 -21278161 - MLT1I LTR MaLR 0 409 1 257 138 0 17 chr9 120993909 120993967 -21277477 + (TG)n Simple_repeat Simple_repeat 2 58 0 235 304 193 12 chr9 120994624 120994785 -21276659 + MIR SINE MIR 1 190 -72 476 236 143 0 chr9 120995021 120995203 -21276241 - L1MD3 LINE L1 -1 7994 7787 2164 161 17 17 chr9 120995227 120995648 -21275796 - L1MA8 LINE L1 -5 6286 5866 398 117 0 0 chr9 120995648 120995708 -21275736 + L1MA8 LINE L1 5825 5884 -407 1363 259 103 17 chr9 120995710 120996178 -21275266 - L1MD2 LINE L1 -184 6175 5668 192 336 42 35 chr9 120996528 120996671 -21274773 - L2 LINE L2 -996 2318 2175 201 74 0 0 chr9 120996983 120997010 -21274434 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 26 0 0 0 chr9 120997010 120997036 -21274408 + AT_rich Low_complexity Low_complexity 1 26 0 227 300 14 0 chr9 120997324 120997394 -21274050 + MIR SINE MIR 73 143 -65 247 333 56 60 chr9 120997572 120997821 -21273623 + L2 LINE L2 2698 2945 -369 211 316 92 46 chr9 120997867 120998019 -21273425 + L2 LINE L2 3112 3270 -43 198 103 0 0 chr9 120999284 120999313 -21272131 + (T)n Simple_repeat Simple_repeat 1 29 0 402 269 0 29 chr9 120999874 120999978 -21271466 + MIR3 SINE MIR 82 182 -26 2279 91 3 0 chr9 121000330 121000626 -21270818 + AluSp SINE Alu 1 297 -16 2076 297 100 10 chr9 121001722 121002021 -21269423 + L2 LINE L2 1984 2255 -1058 463 140 11 11 chr9 121002021 121002114 -21269330 + L1MA10 LINE L1 6227 6319 -15 2076 297 100 10 chr9 121002114 121002801 -21268643 + L2 LINE L2 2255 3069 -244 410 308 17 8 chr9 121002830 121002950 -21268494 + L2 LINE L2 3191 3311 -2 453 315 41 58 chr9 121004374 121004435 -21267009 + MIR SINE MIR 5 66 -196 2136 110 17 3 chr9 121004435 121004727 -21266717 - AluSc SINE Alu -13 296 1 453 315 41 58 chr9 121004727 121004927 -21266517 + MIR SINE MIR 66 262 0 222 392 69 0 chr9 121005275 121005405 -21266039 - MIR3 SINE MIR -24 184 46 2389 102 0 0 chr9 121005767 121006072 -21265372 + AluSg SINE Alu 3 307 -3 186 133 0 0 chr9 121006694 121006724 -21264720 + (CA)n Simple_repeat Simple_repeat 1 30 0 855 151 32 22 chr9 121006835 121007020 -21264424 - MER53 DNA DNA 0 189 3 296 240 27 40 chr9 121007163 121007238 -21264206 - L2 LINE L2 0 3272 3199 549 300 58 21 chr9 121007517 121007757 -21263687 - MIR SINE MIR -11 251 3 341 260 122 24 chr9 121007757 121007888 -21263556 - MER5A DNA MER1_type -28 150 9 266 146 0 49 chr9 121008494 121008576 -21262868 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 1004 267 34 107 chr9 121008597 121009331 -21262113 - L1ME3A LINE L1 0 6162 5489 325 111 40 56 chr9 121009331 121009457 -21261987 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 805 260 84 20 chr9 121009465 121010057 -21261387 - L1ME3A LINE L1 -695 5467 4838 275 346 115 19 chr9 121010198 121010519 -21260925 - L2 LINE L2 -94 3219 2868 213 320 52 64 chr9 121011235 121011407 -21260037 + MIR SINE MIR 37 206 -56 408 287 18 66 chr9 121012313 121012375 -21259069 - MIR3 SINE MIR -2 206 143 898 180 93 0 chr9 121012375 121012547 -21258897 - MER5A DNA MER1_type 0 189 2 408 287 18 66 chr9 121012547 121012651 -21258793 - MIR3 SINE MIR -65 143 48 538 157 20 20 chr9 121013060 121013162 -21258282 + CT-rich Low_complexity Low_complexity 3 104 0 429 109 0 0 chr9 121013266 121013330 -21258114 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 711 206 0 0 chr9 121013335 121013466 -21257978 - FLAM_A SINE Alu -2 131 1 207 100 0 0 chr9 121013589 121013619 -21257825 + (TG)n Simple_repeat Simple_repeat 2 31 0 265 254 66 52 chr9 121013648 121013861 -21257583 - MER113 DNA MER1_type? -304 217 2 2163 152 40 3 chr9 121014376 121014751 -21256693 + MLT1B LTR MaLR 1 389 -1 27 81 0 0 chr9 121015490 121015552 -21255892 + AT_rich Low_complexity Low_complexity 1 62 0 889 259 46 11 chr9 121015571 121015918 -21255526 - L1ME4a LINE L1 -81 6040 5682 297 243 14 0 chr9 121015955 121016025 -21255419 - L1ME4a LINE L1 -515 5606 5536 800 287 46 30 chr9 121016040 121016368 -21255076 - MLT1I LTR MaLR -17 392 60 340 263 170 13 chr9 121016472 121016696 -21254748 - L1ME4a LINE L1 -2293 5515 5257 326 341 111 0 chr9 121017047 121017182 -21254262 + MIR3 SINE MIR 5 154 -54 243 258 0 0 chr9 121017231 121017293 -21254151 - MER117 DNA MER1_type -6 191 130 24 0 0 0 chr9 121018182 121018206 -21253238 + AT_rich Low_complexity Low_complexity 1 24 0 2133 229 16 46 chr9 121019346 121019511 -21251933 - MLT1F LTR MaLR -4 538 370 2345 88 3 0 chr9 121019511 121019806 -21251638 + AluSx SINE Alu 1 296 -16 2133 229 16 46 chr9 121019806 121020185 -21251259 - MLT1F LTR MaLR -172 370 10 2702 142 56 2 chr9 121020456 121020886 -21250558 + MSTB2 LTR MaLR 1 453 -4 1664 205 0 0 chr9 121021136 121021448 -21249996 - AluJb SINE Alu 0 312 1 181 220 0 40 chr9 121021707 121021757 -21249687 - L2 LINE L2 -652 2662 2615 2455 298 90 62 chr9 121022026 121023530 -21247914 + L2 LINE L2 1734 3294 -19 226 293 13 0 chr9 121023882 121023957 -21247487 + L2 LINE L2 2985 3060 -212 600 337 0 10 chr9 121024287 121024486 -21246958 - MIR SINE MIR -18 244 48 24 67 0 0 chr9 121025112 121025157 -21246287 + AT_rich Low_complexity Low_complexity 1 45 0 4073 84 11 0 chr9 121025249 121025797 -21245647 + MER41A LTR ERV1 1 554 0 550 308 143 36 chr9 121025839 121026225 -21245219 + MLT1J2 LTR MaLR 24 450 0 249 347 62 23 chr9 121028285 121028461 -21242983 + L3 LINE CR1 1112 1294 -283 22 0 0 0 chr9 121029149 121029171 -21242273 + AT_rich Low_complexity Low_complexity 1 22 0 215 371 69 0 chr9 121030217 121030333 -21241111 + L3 LINE CR1 1293 1416 -161 431 318 46 26 chr9 121030382 121030533 -21240911 + L3 LINE CR1 1412 1565 -12 1508 213 3 3 chr9 121031084 121031413 -21240031 - L1MC3 LINE L1 -4 7781 7453 1376 238 36 20 chr9 121031423 121031782 -21239662 + MLT1A2 LTR MaLR 11 374 0 1939 198 129 95 chr9 121031782 121032045 -21239399 - L1MC3 LINE L1 -328 7457 7204 256 274 0 0 chr9 121032045 121032107 -21239337 - MLT1F1 LTR MaLR -442 125 64 1939 198 129 95 chr9 121032107 121032463 -21238981 - L1MC3 LINE L1 -581 7204 6754 30 0 0 0 chr9 121032464 121032494 -21238950 + AT_rich Low_complexity Low_complexity 1 30 0 12046 174 31 7 chr9 121032567 121033580 -21237864 + L1M1 LINE L1 12 999 -6566 261 0 0 0 chr9 121033580 121033609 -21237835 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 12046 174 31 7 chr9 121033609 121034716 -21236728 + L1M1 LINE L1 999 2183 -5382 22 56 0 0 chr9 121036662 121036698 -21234746 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr9 121038132 121038181 -21233263 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr9 121038284 121038313 -21233131 + AT_rich Low_complexity Low_complexity 1 29 0 329 289 0 0 chr9 121040039 121040122 -21231322 + (TAAG)n Simple_repeat Simple_repeat 3 85 0 21 57 0 0 chr9 121040736 121040771 -21230673 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 121046523 121046553 -21224891 + AT_rich Low_complexity Low_complexity 1 30 0 200 272 17 35 chr9 121047199 121047372 -21224072 + (TAA)n Simple_repeat Simple_repeat 3 172 0 21 82 0 0 chr9 121048753 121048802 -21222642 + AT_rich Low_complexity Low_complexity 1 49 0 13423 183 21 28 chr9 121051111 121051342 -21220102 + L1MEc LINE L1 2960 3191 -4374 2222 115 7 3 chr9 121051342 121051647 -21219797 + AluSg SINE Alu 1 306 -4 13423 183 21 28 chr9 121051647 121053855 -21217589 + L1MEc LINE L1 3191 5372 -2193 2135 127 0 6 chr9 121053855 121054170 -21217274 + AluSq SINE Alu 1 313 0 13423 183 21 28 chr9 121054170 121055451 -21215993 + L1MEc LINE L1 5372 6661 -904 305 269 13 0 chr9 121055452 121055530 -21215914 - L1MC4 LINE L1 -1350 6692 6614 265 169 13 52 chr9 121055533 121055610 -21215834 + (TA)n Simple_repeat Simple_repeat 2 75 0 369 233 0 83 chr9 121055753 121055886 -21215558 - L1MA4 LINE L1 -60 6240 6119 2236 110 3 0 chr9 121055888 121056198 -21215246 + AluY SINE Alu 1 311 0 298 195 32 24 chr9 121056435 121056558 -21214886 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 192 92 46 46 chr9 121056559 121056624 -21214820 + (TATAA)n Simple_repeat Simple_repeat 3 67 0 242 296 99 31 chr9 121057645 121057807 -21213637 + L2 LINE L2 2876 3048 -265 5173 180 17 17 chr9 121057865 121059668 -21211776 - L1PA15 LINE L1 -21 6795 4995 6155 225 20 5 chr9 121059669 121061155 -21210289 + L1P LINE L1 2841 4348 -1798 4113 220 9 9 chr9 121061157 121062382 -21209062 - L1PA15 LINE L1 -4110 2687 1447 654 286 94 27 chr9 121062449 121062746 -21208698 - L2 LINE L2 -368 2946 2630 1490 213 7 3 chr9 121062831 121063127 -21208317 - AluJo SINE Alu -15 297 1 240 143 0 0 chr9 121064003 121064045 -21207399 + Alu SINE Alu 121 162 -141 1802 102 4 0 chr9 121064045 121064281 -21207163 + AluSx SINE Alu 60 296 -16 21 36 0 0 chr9 121065500 121065528 -21205916 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr9 121065557 121065580 -21205864 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 633 327 91 34 chr9 121065586 121066103 -21205341 - L2 LINE L2 -8 3305 2771 213 342 25 42 chr9 121066263 121066383 -21205061 + L2 LINE L2 3155 3272 0 230 197 61 30 chr9 121066411 121066477 -21204967 - MIR SINE MIR -105 157 90 2010 139 0 10 chr9 121067679 121067974 -21203470 + AluSg SINE Alu 2 293 -17 492 337 22 6 chr9 121068107 121068288 -21203156 - MER91B DNA MER1_type -5 185 2 325 267 169 46 chr9 121068487 121068682 -21202762 - MIR SINE MIR -14 248 30 314 297 79 0 chr9 121068837 121068938 -21202506 + MER5A DNA MER1_type 1 109 -80 204 67 0 0 chr9 121070181 121070211 -21201233 + (GA)n Simple_repeat Simple_repeat 1 30 0 237 178 0 0 chr9 121072015 121072060 -21199384 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 425 260 29 53 chr9 121072384 121072592 -21198852 - MER3 DNA MER1_type -5 204 2 352 285 100 34 chr9 121072873 121073246 -21198198 - MLT1H LTR MaLR -5 590 130 191 233 0 0 chr9 121074433 121074476 -21196968 + L2 LINE L2 3271 3313 0 22 0 0 0 chr9 121074628 121074650 -21196794 + AT_rich Low_complexity Low_complexity 1 22 0 3278 38 0 2 chr9 121074660 121075058 -21196386 + L1PA7 LINE L1 5755 6151 -3 269 237 8 23 chr9 121075096 121075227 -21196217 + GA-rich Low_complexity Low_complexity 2 130 0 238 292 22 11 chr9 121075541 121075630 -21195814 - MIR SINE MIR -68 194 105 338 214 26 60 chr9 121075666 121075783 -21195661 + L1ME LINE L1 5473 5585 -536 407 196 0 13 chr9 121075789 121075872 -21195572 + AluJ/FLAM SINE Alu 3 63 -239 280 349 8 16 chr9 121076825 121076951 -21194493 + MIR SINE MIR 20 144 -118 250 358 68 27 chr9 121077549 121077697 -21193747 + MIR SINE MIR 69 222 -40 461 304 0 47 chr9 121078384 121078555 -21192889 + MIR SINE MIR 21 183 -79 362 302 226 16 chr9 121078840 121079088 -21192356 + MLT1K LTR MaLR 270 569 -19 248 281 37 0 chr9 121079108 121079190 -21192254 - MIR SINE MIR -108 154 70 317 356 31 37 chr9 121079199 121079362 -21192082 + MIR SINE MIR 14 175 -87 181 290 14 0 chr9 121079672 121079741 -21191703 - L2 LINE L2 -692 2622 2553 334 306 40 16 chr9 121080254 121080378 -21191066 + MIR SINE MIR 3 129 -133 2225 112 16 0 chr9 121081103 121081407 -21190037 - AluSx SINE Alu -3 309 1 455 297 63 57 chr9 121081429 121081828 -21189616 + LTR33A LTR ERVL 105 516 -7 1740 245 89 44 chr9 121081828 121082434 -21189010 - MLT1E2 LTR MaLR 0 626 1 596 307 194 19 chr9 121082693 121083120 -21188324 + L3 LINE CR1 741 1242 -335 778 173 65 0 chr9 121083181 121083366 -21188078 + L1MB4 LINE L1 5984 6180 0 247 351 27 18 chr9 121083441 121083552 -21187892 - MER5A DNA MER1_type -8 181 70 207 0 0 0 chr9 121084064 121084087 -21187357 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 422 280 72 49 chr9 121084140 121084404 -21187040 - LTR16A LTR ERVL -150 300 31 333 278 11 0 chr9 121084456 121084546 -21186898 + MIR SINE MIR 160 250 -12 1082 255 91 75 chr9 121084551 121085153 -21186291 + MLT1E3 LTR MaLR 1 620 -4 216 214 0 0 chr9 121085159 121085201 -21186243 + (TTA)n Simple_repeat Simple_repeat 1 42 0 294 336 18 0 chr9 121085412 121085525 -21185919 - MER94 DNA DNA -16 118 4 186 219 0 141 chr9 121085629 121085693 -21185751 - L2 LINE L2 -50 3222 3168 408 40 0 0 chr9 121085694 121085744 -21185700 + (CA)n Simple_repeat Simple_repeat 1 50 0 198 71 0 0 chr9 121085744 121085772 -21185672 + (GA)n Simple_repeat Simple_repeat 1 28 0 251 286 135 38 chr9 121086375 121086508 -21184936 - L2 LINE L2 0 3313 3168 2144 216 26 58 chr9 121086528 121087065 -21184379 - MER74A LTR ERVL 0 558 39 356 326 38 15 chr9 121087158 121087290 -21184154 + MIR3 SINE MIR 24 158 -50 306 0 0 0 chr9 121087559 121087593 -21183851 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 207 340 190 21 chr9 121088041 121088320 -21183124 + L2 LINE L2 2579 2904 -410 25 0 0 0 chr9 121088564 121088589 -21182855 + AT_rich Low_complexity Low_complexity 1 25 0 1247 54 0 0 chr9 121088632 121088781 -21182663 - AluY SINE Alu -9 302 154 1778 162 7 14 chr9 121088976 121089266 -21182178 - AluJb SINE Alu -24 288 1 1299 333 111 48 chr9 121089267 121090644 -21180800 + L2 LINE L2 1836 3311 -2 295 332 58 49 chr9 121090639 121090877 -21180567 + MIR SINE MIR 13 256 -6 * 2268 107 0 3 chr9 121091154 121091463 -21179981 + AluSq SINE Alu 1 308 -5 1498 262 54 26 chr9 121091673 121092152 -21179292 - MLT1H LTR MaLR -5 544 1 253 307 104 0 chr9 121093311 121093444 -21178000 - MIR SINE MIR -65 143 17 598 281 105 61 chr9 121093795 121094318 -21177126 + MLT1H1 LTR MaLR 10 555 0 272 271 54 100 chr9 121094452 121094692 -21176752 + MLT1H1-int LTR MaLR 316 544 -827 270 189 19 0 chr9 121095437 121095490 -21175954 - MER63 DNA MER1_type -33 1029 976 * 279 325 77 0 chr9 121095480 121095597 -21175847 - MER63 DNA MER1_type -302 760 9 635 316 152 20 chr9 121095891 121096346 -21175098 + MLT1H1 LTR MaLR 12 526 -29 278 359 1 39 chr9 121096438 121096571 -21174873 - MIR3 SINE MIR -51 157 40 28 0 0 0 chr9 121096980 121097008 -21174436 + AT_rich Low_complexity Low_complexity 1 28 0 1955 159 3 0 chr9 121097127 121097417 -21174027 - AluSx SINE Alu -21 291 1 225 299 277 0 chr9 121097873 121098010 -21173434 - MIR SINE MIR -1 261 87 351 245 61 31 chr9 121098097 121098195 -21173249 - MIR SINE MIR -127 135 35 1501 157 75 0 chr9 121098756 121099036 -21172408 + L1MA9 LINE L1 5828 6128 -184 2209 139 21 16 chr9 121099039 121099412 -21172032 - THE1C LTR MaLR 0 375 1 9734 112 39 47 chr9 121099412 121101005 -21170439 - THE1C-int LTR MaLR 0 1580 1 1176 158 154 79 chr9 121101005 121101335 -21170109 - THE1B LTR MaLR 0 364 1 811 110 5 139 chr9 121101340 121101549 -21169895 + L1MA9 LINE L1 6132 6312 0 360 357 41 25 chr9 121101836 121102032 -21169412 + MIR SINE MIR 15 213 -49 2466 128 0 6 chr9 121102897 121103263 -21168181 + THE1B LTR MaLR 1 364 0 257 229 16 0 chr9 121103516 121103577 -21167867 - MIR SINE MIR -42 220 159 930 222 15 5 chr9 121103649 121103847 -21167597 - MLT1D LTR MaLR 0 505 306 1074 155 49 8 chr9 121104366 121104611 -21166833 - L1M2 LINE L1 -773 5539 5285 278 172 30 71 chr9 121104597 121104660 -21166784 - L1MB3 LINE L1 -2 6181 6122 * 2408 128 14 3 chr9 121104660 121105020 -21166424 + THE1B LTR MaLR 1 364 0 278 172 30 71 chr9 121105020 121105055 -21166389 - L1MB3 LINE L1 -61 6122 6087 1341 153 4 8 chr9 121105060 121105295 -21166149 - L1MA4 LINE L1 -279 6021 5788 791 142 4 142 chr9 121105283 121105515 -21165929 - L1MA4 LINE L1 -819 5327 5128 * 512 266 28 0 chr9 121105535 121105678 -21165766 - MLT1D LTR MaLR -350 155 9 351 0 0 0 chr9 121105792 121105831 -21165613 + (TAA)n Simple_repeat Simple_repeat 2 40 0 423 0 0 0 chr9 121106305 121106352 -21165092 + (CA)n Simple_repeat Simple_repeat 1 47 0 216 0 0 0 chr9 121106769 121106793 -21164651 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr9 121107317 121107341 -21164103 + AT_rich Low_complexity Low_complexity 1 24 0 621 168 0 8 chr9 121107447 121107566 -21163878 + L1PB4 LINE L1 6039 6156 0 23 33 0 0 chr9 121109052 121109082 -21162362 + AT_rich Low_complexity Low_complexity 1 30 0 405 261 0 0 chr9 121109392 121109507 -21161937 + (TG)n Simple_repeat Simple_repeat 2 116 0 242 369 19 38 chr9 121110214 121110371 -21161073 - L2 LINE L2 -1 3312 3159 274 288 75 20 chr9 121110572 121110718 -21160726 + L2 LINE L2 3148 3301 -12 * 296 318 47 16 chr9 121110710 121110839 -21160605 - MIR SINE MIR -49 213 81 218 215 31 15 chr9 121110981 121111046 -21160398 + (TATAA)n Simple_repeat Simple_repeat 1 66 0 3763 152 52 14 chr9 121111324 121112062 -21159382 - L1MA6 LINE L1 0 7321 6556 11074 144 14 42 chr9 121112066 121114068 -21157376 + Tigger1 DNA MER2_type 1 1946 -472 8827 225 128 30 chr9 121114070 121116982 -21154462 - L1MA6 LINE L1 -1078 6089 2938 4809 81 6 1 chr9 121116982 121117637 -21153807 - L1PA8 LINE L1 -1 6171 5514 8827 225 128 30 chr9 121117637 121119091 -21152353 - L1MA6 LINE L1 -4229 2938 1628 1784 326 13 27 chr9 121119232 121119928 -21151516 - L1MA6 LINE L1 -6478 690 5 741 331 74 23 chr9 121120871 121121338 -21150106 + MLT1H LTR MaLR 10 549 0 200 300 25 0 chr9 121121668 121121748 -21149696 + (CTCA)n Simple_repeat Simple_repeat 3 84 0 207 232 36 0 chr9 121121941 121121997 -21149447 + (TATG)n Simple_repeat Simple_repeat 2 59 0 216 0 0 0 chr9 121122110 121122134 -21149310 + (TG)n Simple_repeat Simple_repeat 1 24 0 1540 191 4 0 chr9 121122171 121122438 -21149006 + AluJo SINE Alu 12 279 -33 186 43 0 0 chr9 121122441 121122464 -21148980 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 764 112 35 0 chr9 121123523 121123639 -21147805 - L1PA10 LINE L1 -5 6163 6044 416 302 63 13 chr9 121123653 121123812 -21147632 - MIR SINE MIR -59 203 37 376 273 10 10 chr9 121123819 121123918 -21147526 - L2 LINE L2 0 3313 3215 464 264 82 50 chr9 121123921 121124103 -21147341 - L2 LINE L2 -1377 1937 1750 213 39 0 0 chr9 121124148 121124174 -21147270 + (TA)n Simple_repeat Simple_repeat 2 27 0 243 346 19 0 chr9 121124196 121124303 -21147141 - L2 LINE L2 -1747 1567 1459 829 76 28 14 chr9 121124364 121124509 -21146935 + (TTTC)n Simple_repeat Simple_repeat 1 147 0 236 86 0 29 chr9 121124544 121124579 -21146865 - AluJb SINE Alu -143 160 127 882 137 0 0 chr9 121124596 121124720 -21146724 - AluJb SINE Alu -188 124 1 543 305 37 11 chr9 121124731 121124921 -21146523 - L2 LINE L2 -1905 1409 1215 311 375 12 19 chr9 121126298 121126458 -21144986 + L2 LINE L2 2649 2807 -507 248 94 0 0 chr9 121126466 121126498 -21144946 + U2 snRNA snRNA 4 35 -153 793 345 33 47 chr9 121126858 121127310 -21144134 + L2 LINE L2 2395 2840 -474 510 333 147 3 chr9 121127327 121127612 -21143832 + L2 LINE L2 2988 3313 0 2059 152 0 0 chr9 121127973 121128283 -21143161 - AluSx SINE Alu 0 312 3 322 371 2 4 chr9 121128396 121128546 -21142898 + MIR SINE MIR 6 153 -63 267 261 0 0 chr9 121129300 121129365 -21142079 - MIR SINE MIR -116 146 82 190 349 229 10 chr9 121130016 121130208 -21141236 - MIR SINE MIR 0 262 29 180 270 226 15 chr9 121130724 121130861 -21140583 - MIR SINE MIR -11 251 86 276 77 0 0 chr9 121131431 121131470 -21139974 + (CA)n Simple_repeat Simple_repeat 2 40 0 298 261 0 0 chr9 121131747 121131816 -21139628 - MLT1K LTR MaLR -11 577 509 249 259 0 0 chr9 121132127 121132181 -21139263 - MLT1K LTR MaLR -347 241 188 180 329 40 26 chr9 121132280 121132356 -21139088 - MIR SINE MIR -90 118 42 209 316 0 0 chr9 121132813 121132870 -21138574 - L2 LINE L2 -8 3305 3249 1994 138 0 20 chr9 121133121 121133419 -21138025 - AluSx SINE Alu -17 295 4 259 302 127 40 chr9 121134355 121134481 -21136963 + MIR SINE MIR 35 171 -91 180 135 0 0 chr9 121134629 121134666 -21136778 + (TA)n Simple_repeat Simple_repeat 2 38 0 213 224 9 28 chr9 121135197 121135304 -21136140 + (ATG)n Simple_repeat Simple_repeat 2 106 0 367 340 126 10 chr9 121135658 121135864 -21135580 + MIR SINE MIR 16 245 -17 186 330 99 22 chr9 121136601 121136692 -21134752 + MIR SINE MIR 74 171 -91 * 428 305 59 42 chr9 121136684 121136920 -21134524 - MIR SINE MIR -15 247 8 770 226 69 29 chr9 121137149 121137353 -21134091 - MER20 DNA MER1_type -1 218 7 451 270 20 46 chr9 121137567 121137719 -21133725 + MIR SINE MIR 19 166 -96 454 301 8 0 chr9 121137908 121138031 -21133413 + L2 LINE L2 3190 3313 0 26 0 0 0 chr9 121138146 121138172 -21133272 + AT_rich Low_complexity Low_complexity 1 26 0 487 253 54 59 chr9 121138603 121138789 -21132655 + MIR SINE MIR 66 250 -12 303 301 86 11 chr9 121139641 121139734 -21131710 - L2 LINE L2 -25 3247 3148 252 170 0 0 chr9 121139986 121140039 -21131405 + (CA)n Simple_repeat Simple_repeat 2 54 0 310 271 21 0 chr9 121141174 121141270 -21130174 - L1MC4 LINE L1 -1340 6702 6605 384 359 38 27 chr9 121141722 121142059 -21129385 + L1M4c LINE L1 2222 2559 -3823 33 0 0 0 chr9 121142421 121142454 -21128990 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr9 121142580 121142603 -21128841 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 121143323 121143351 -21128093 + AT_rich Low_complexity Low_complexity 1 28 0 262 234 52 4 chr9 121143427 121143549 -21127895 + L1M4c LINE L1 4039 4171 -2211 347 319 59 12 chr9 121143781 121143988 -21127456 + L1M4c LINE L1 4490 4707 -1675 23 33 0 0 chr9 121144033 121144063 -21127381 + AT_rich Low_complexity Low_complexity 1 30 0 250 282 56 0 chr9 121144263 121144334 -21127110 + L2 LINE L2 3194 3268 -45 291 234 117 56 chr9 121144434 121144648 -21126796 - L1ME3A LINE L1 -6 6164 5938 361 312 64 13 chr9 121144806 121144963 -21126481 - MIR SINE MIR -49 213 49 236 265 48 24 chr9 121145008 121145091 -21126353 + MIR SINE MIR 173 257 -5 518 263 94 12 chr9 121145106 121145277 -21126167 - MIR SINE MIR -68 194 10 211 321 62 0 chr9 121146444 121146525 -21124919 - L2 LINE L2 -165 3148 3063 270 247 0 0 chr9 121146991 121147068 -21124376 + (CATA)n Simple_repeat Simple_repeat 4 80 0 882 261 79 83 chr9 121147079 121147361 -21124083 - HAL1 LINE L1 -145 2362 2080 1215 186 30 113 chr9 121147361 121147759 -21123685 - MLT1A1 LTR MaLR 0 365 1 882 261 79 83 chr9 121147759 121148534 -21122910 - HAL1 LINE L1 -427 2080 1309 337 282 0 35 chr9 121148534 121148676 -21122768 + (TA)n Simple_repeat Simple_repeat 1 137 0 461 238 64 0 chr9 121148679 121148851 -21122593 - HAL1 LINE L1 -1228 1279 1097 421 233 11 0 chr9 121148996 121149086 -21122358 + L2 LINE L2 2615 2705 -609 325 281 31 23 chr9 121149126 121149254 -21122190 - HAL1b LINE L1 -29 1319 1191 22 0 0 30 chr9 121149330 121149347 -21122097 + AT_rich Low_complexity Low_complexity 1 18 -14 2287 92 0 13 chr9 121149347 121149653 -21121791 - AluY SINE Alu -9 302 1 22 0 0 30 chr9 121149653 121149668 -21121776 + AT_rich Low_complexity Low_complexity 18 32 0 1973 192 44 0 chr9 121149673 121150063 -21121381 - L1MA8 LINE L1 -29 6262 5856 920 255 72 47 chr9 121150057 121150085 -21121359 - HAL1b LINE L1 -219 1129 1103 * 2005 59 0 0 chr9 121150085 121150338 -21121106 + L1PA5 LINE L1 5898 6150 -4 920 255 72 47 chr9 121150338 121150822 -21120622 - HAL1b LINE L1 -245 1103 604 973 191 38 0 chr9 121150834 121151044 -21120400 - MER33 DNA MER1_type -106 218 1 277 179 0 0 chr9 121151191 121151247 -21120197 - L1MD1 LINE L1 -11 6231 6176 434 288 36 22 chr9 121151346 121151485 -21119959 + L2 LINE L2 2695 2835 -479 424 298 58 68 chr9 121151520 121151846 -21119598 + L2 LINE L2 2872 3194 -119 275 253 92 23 chr9 121151856 121151943 -21119501 + MIR SINE MIR 64 156 -106 511 254 81 32 chr9 121151949 121152134 -21119310 - MIR SINE MIR -12 250 57 391 290 65 16 chr9 121152249 121152373 -21119071 - MIR SINE MIR -113 149 20 205 335 88 39 chr9 121153219 121153401 -21118043 + L3 LINE CR1 1163 1353 -224 332 311 21 25 chr9 121153428 121153555 -21117889 + MIR SINE MIR 34 161 -63 207 309 29 0 chr9 121153589 121153657 -21117787 + MIR SINE MIR 164 233 -29 22 0 0 0 chr9 121153885 121153907 -21117537 + AT_rich Low_complexity Low_complexity 1 22 0 239 286 98 38 chr9 121154317 121154450 -21116994 - L2 LINE L2 -1 3312 3172 239 260 20 40 chr9 121154470 121154570 -21116874 + L1ME LINE L1 5788 5885 -285 29 60 0 0 chr9 121154847 121154897 -21116547 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 121155391 121155412 -21116032 + AT_rich Low_complexity Low_complexity 1 21 0 197 358 32 70 chr9 121155529 121155716 -21115728 + L2 LINE L2 2934 3113 -159 243 0 0 0 chr9 121157231 121157258 -21114186 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 244 283 0 0 chr9 121158016 121158076 -21113368 + L2 LINE L2 3254 3313 0 548 344 29 25 chr9 121158108 121158352 -21113092 - MIR SINE MIR 0 262 18 757 167 8 15 chr9 121158971 121159103 -21112341 - FLAM_C SINE Alu 0 133 3 819 241 34 34 chr9 121159182 121159444 -21112000 + MER58 DNA MER1_type 25 286 -2134 310 210 0 0 chr9 121159440 121159502 -21111942 + MER58 DNA MER1_type 2321 2382 -38 * 452 258 24 0 chr9 121159513 121159637 -21111807 - MER5A DNA MER1_type -51 138 12 1332 176 63 91 chr9 121160380 121160699 -21110745 - AluJo SINE Alu -2 310 1 364 240 27 0 chr9 121160699 121160774 -21110670 - MER81 DNA DNA -36 78 2 1449 215 3 11 chr9 121160803 121161087 -21110357 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr9 121161090 121161110 -21110334 + (TAA)n Simple_repeat Simple_repeat 2 21 0 688 231 26 83 chr9 121161709 121161938 -21109506 - MER20 DNA MER1_type 0 219 4 2252 107 0 0 chr9 121162530 121162830 -21108614 - AluY SINE Alu -11 300 1 1811 229 78 49 chr9 121163221 121163576 -21107868 - L1MC/D LINE L1 -754 5605 5262 2191 131 0 3 chr9 121163576 121163889 -21107555 - AluSx SINE Alu 0 312 1 1811 229 78 49 chr9 121163889 121164641 -21106803 - L1MC/D LINE L1 -1097 5262 4359 274 294 52 0 chr9 121164749 121164885 -21106559 - L1MC/D LINE L1 -1796 4350 4208 307 335 19 32 chr9 121166148 121166306 -21105138 - MIR SINE MIR -22 240 85 184 213 213 0 chr9 121166302 121166363 -21105081 - L2 LINE L2 -6 3307 3234 * 282 116 0 0 chr9 121166497 121166540 -21104904 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 342 302 90 50 chr9 121167129 121167351 -21104093 - MIR SINE MIR -15 247 17 197 260 208 31 chr9 121167860 121167956 -21103488 - L2 LINE L2 -19 3294 3182 202 363 0 59 chr9 121168931 121169066 -21102378 + L2 LINE L2 2935 3061 -211 2246 297 71 31 chr9 121169320 121170433 -21101011 + L2 LINE L2 2150 3313 0 386 296 101 49 chr9 121170463 121170770 -21100674 + L1ME4a LINE L1 5784 6106 -15 582 236 171 43 chr9 121170893 121171173 -21100271 + MER46C DNA MER2_type 23 338 0 38 22 0 0 chr9 121172663 121172708 -21098736 + AT_rich Low_complexity Low_complexity 1 45 0 215 196 43 0 chr9 121172847 121172893 -21098551 - L2 LINE L2 -10 3262 3215 303 147 59 0 chr9 121172973 121173075 -21098369 + (TA)n Simple_repeat Simple_repeat 1 108 0 273 174 0 14 chr9 121173142 121173211 -21098233 + MER96B DNA MER1_type? 111 178 -239 220 345 33 2 chr9 121173754 121173859 -21097585 + MIR SINE MIR 54 161 -47 1001 290 112 44 chr9 121174793 121175540 -21095904 + L2 LINE L2 2524 3313 0 282 253 29 0 chr9 121175700 121175785 -21095659 - MIR SINE MIR -83 125 35 181 382 26 0 chr9 121176831 121176907 -21094537 - MIR SINE MIR -183 79 2 1153 220 66 133 chr9 121177446 121178147 -21093297 - MER50 LTR ERV1 0 734 81 235 280 20 40 chr9 121178211 121178311 -21093133 + L2 LINE L2 3122 3219 -94 200 39 0 0 chr9 121179014 121179040 -21092404 + MIR SINE MIR 227 252 -10 320 273 61 0 chr9 121179505 121179604 -21091840 - MIR SINE MIR -3 259 155 245 206 27 41 chr9 121179821 121179894 -21091550 + MIR3 SINE MIR 105 176 -32 224 384 61 0 chr9 121180453 121180552 -21090892 - L2 LINE L2 0 3272 3168 240 194 43 43 chr9 121181631 121181724 -21089720 + T-rich Low_complexity Low_complexity 4 96 0 1318 275 124 30 chr9 121181776 121182318 -21089126 + MLT1E LTR MaLR 1 593 0 1860 97 8 0 chr9 121183501 121183748 -21087696 + AluSp SINE Alu 1 249 -64 298 100 0 0 chr9 121183848 121183898 -21087546 + AluSp SINE Alu 254 303 0 23 0 0 0 chr9 121184085 121184108 -21087336 + AT_rich Low_complexity Low_complexity 1 23 0 261 340 26 10 chr9 121184219 121184413 -21087031 + L1ME4a LINE L1 5730 5926 -195 685 226 79 34 chr9 121184499 121184676 -21086768 - MER20 DNA MER1_type -34 185 1 360 314 32 39 chr9 121185197 121185353 -21086091 - MIR3 SINE MIR -11 197 43 21 0 0 0 chr9 121185427 121185448 -21085996 + AT_rich Low_complexity Low_complexity 1 21 0 258 143 82 0 chr9 121185513 121185562 -21085882 - L2 LINE L2 -3 3269 3217 219 295 80 25 chr9 121186081 121186208 -21085236 + MIR SINE MIR 15 157 -51 1143 250 70 45 chr9 121186572 121187016 -21084428 - LTR16A1 LTR ERVL 0 457 3 189 74 0 0 chr9 121187220 121187247 -21084197 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 814 193 0 0 chr9 121187250 121187395 -21084049 - AluJ SINE Alu -11 301 157 646 176 0 0 chr9 121187395 121187503 -21083941 - AluJ SINE Alu -204 108 1 662 329 24 8 chr9 121188737 121188983 -21082461 - MIR SINE MIR -10 252 3 323 297 121 0 chr9 121189573 121189664 -21081780 - L2 LINE L2 -27 3286 3185 185 357 0 0 chr9 121189706 121189762 -21081682 + L2 LINE L2 3209 3264 -8 190 398 25 41 chr9 121190685 121190881 -21080563 + L2 LINE L2 2784 2976 -338 216 333 14 0 chr9 121191047 121191119 -21080325 + L2 LINE L2 3236 3308 -5 246 116 0 0 chr9 121191430 121191473 -21079971 + (TG)n Simple_repeat Simple_repeat 2 44 0 2118 118 0 37 chr9 121191625 121191947 -21079497 - AluSq SINE Alu -3 310 1 218 222 56 42 chr9 121192584 121192656 -21078788 + MIR SINE MIR 50 122 -86 1161 314 40 11 chr9 121192768 121193239 -21078205 - LTR33 LTR ERVL -21 500 16 25 0 0 0 chr9 121194017 121194042 -21077402 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 121194317 121194338 -21077106 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr9 121195276 121195307 -21076137 + AT_rich Low_complexity Low_complexity 1 31 0 324 0 0 0 chr9 121195446 121195482 -21075962 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 232 304 0 0 chr9 121195559 121195615 -21075829 + L2 LINE L2 3253 3308 -5 195 319 14 0 chr9 121195697 121195766 -21075678 + MIR SINE MIR 156 225 -37 1977 170 29 18 chr9 121195992 121196375 -21075069 + MLT1B LTR MaLR 2 388 -2 279 290 54 0 chr9 121196734 121196827 -21074617 + MIR SINE MIR 100 197 -65 458 200 8 75 chr9 121196856 121196976 -21074468 + MER97b DNA MER1_type? 11 122 -931 22 0 0 0 chr9 121197341 121197363 -21074081 + AT_rich Low_complexity Low_complexity 1 22 0 249 94 23 94 chr9 121197393 121197564 -21073880 + (TA)n Simple_repeat Simple_repeat 1 159 0 795 11 0 0 chr9 121198085 121198217 -21073227 + L1PA3 LINE L1 6061 6192 0 640 301 17 6 chr9 121198426 121198602 -21072842 - MER5B DNA MER1_type 0 178 1 436 316 53 25 chr9 121199120 121199364 -21072080 - MIR SINE MIR 0 262 12 28 48 0 0 chr9 121200076 121200118 -21071326 + AT_rich Low_complexity Low_complexity 1 42 0 239 327 47 47 chr9 121201081 121201188 -21070256 + MIR3 SINE MIR 10 116 -92 369 62 0 0 chr9 121201711 121201759 -21069685 + (TC)n Simple_repeat Simple_repeat 2 49 0 197 98 24 0 chr9 121201761 121201802 -21069642 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 26 0 0 0 chr9 121201803 121201829 -21069615 + AT_rich Low_complexity Low_complexity 1 26 0 277 365 48 16 chr9 121201851 121201977 -21069467 - MIR3 SINE MIR -15 193 64 218 368 87 54 chr9 121202938 121203308 -21068136 + L2 LINE L2 2830 3211 -61 284 250 71 62 chr9 121204670 121204782 -21066662 + MIR SINE MIR 84 196 -66 1514 228 50 11 chr9 121205590 121205754 -21065690 - MSTD LTR MaLR 0 396 240 1764 188 111 8 chr9 121205754 121206142 -21065302 - MSTA LTR MaLR 0 428 1 1514 228 50 11 chr9 121206142 121206358 -21065086 - MSTD LTR MaLR -156 240 1 294 294 79 54 chr9 121206365 121206749 -21064695 + MLT1J LTR MaLR 60 493 -18 195 242 55 55 chr9 121206839 121206930 -21064514 - MIR SINE MIR -66 196 106 194 292 133 9 chr9 121206902 121207015 -21064429 - MIR3 SINE MIR -74 134 8 * 22 35 0 0 chr9 121207099 121207128 -21064316 + AT_rich Low_complexity Low_complexity 1 29 0 239 338 0 25 chr9 121207482 121207562 -21063882 + MIR SINE MIR 75 152 -110 2034 133 0 3 chr9 121208657 121208951 -21062493 - AluSg SINE Alu -17 293 1 202 408 0 10 chr9 121208952 121209050 -21062394 + MIR3 SINE MIR 101 197 -11 2198 114 7 0 chr9 121209906 121210213 -21061231 - AluSc SINE Alu 0 309 1 257 183 254 14 chr9 121210213 121210242 -21061202 + MIR SINE MIR 94 115 -147 194 62 31 0 chr9 121210242 121210274 -21061170 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 257 183 254 14 chr9 121210274 121210315 -21061129 + MIR SINE MIR 115 181 -81 186 338 0 15 chr9 121211815 121211883 -21059561 + L3 LINE CR1 1508 1574 -3 262 269 1 38 chr9 121212536 121212618 -21058826 - MIR SINE MIR -69 139 58 801 276 10 40 chr9 121213512 121213809 -21057635 + L1ME LINE L1 5374 5661 -509 1896 72 0 0 chr9 121213968 121214217 -21057227 - AluY SINE Alu -62 249 1 2729 220 46 34 chr9 121214268 121214600 -21056844 - L1MD2 LINE L1 -3 6356 6025 495 282 53 93 chr9 121214600 121215071 -21056373 - L1MB5 LINE L1 -165 6009 5558 185 352 0 0 chr9 121215097 121215151 -21056293 + L2 LINE L2 3241 3294 -19 257 262 214 35 chr9 121216467 121216612 -21054832 + L2 LINE L2 3143 3313 0 1989 159 54 14 chr9 121216711 121217082 -21054362 + LTR45B LTR ERV1 3 388 -101 265 333 21 0 chr9 121217788 121217881 -21053563 - MIR SINE MIR -107 155 61 1699 191 11 40 chr9 121217914 121218290 -21053154 - MLT1A1 LTR MaLR 0 365 1 1868 173 7 81 chr9 121218367 121218788 -21052656 - MLT1B LTR MaLR 0 390 1 1885 174 7 0 chr9 121218934 121219233 -21052211 + AluSx SINE Alu 1 301 -11 210 328 0 0 chr9 121219233 121219294 -21052150 + G-rich Low_complexity Low_complexity 6 66 0 1080 313 94 17 chr9 121221006 121221475 -21049969 - L2 LINE L2 -2 3311 2807 1052 264 76 52 chr9 121221520 121221898 -21049546 - L1ME1 LINE L1 -7 6228 5833 2192 141 120 5 chr9 121221898 121222281 -21049163 - MSTA LTR MaLR 0 428 2 1052 264 76 52 chr9 121222281 121222417 -21049027 - L1ME1 LINE L1 -402 5833 5702 604 239 88 29 chr9 121222445 121222717 -21048727 - L1ME1 LINE L1 -1604 4611 4324 386 275 156 52 chr9 121222796 121223507 -21047937 - L1ME1 LINE L1 -4468 1747 1075 788 316 12 19 chr9 121223558 121223982 -21047462 - L1ME1 LINE L1 -5400 996 576 613 329 104 19 chr9 121225196 121225569 -21045875 + L2 LINE L2 2635 3049 -223 219 154 0 0 chr9 121225828 121225867 -21045577 + A-rich Low_complexity Low_complexity 1 39 0 186 342 0 13 chr9 121225882 121225958 -21045486 - MIR SINE MIR -117 145 71 236 338 30 8 chr9 121226035 121226168 -21045276 - MER117 DNA MER1_type -1 196 61 262 244 211 32 chr9 121228319 121228442 -21043002 - MIR3 SINE MIR -39 169 25 23 33 0 0 chr9 121228461 121228491 -21042953 + AT_rich Low_complexity Low_complexity 1 30 0 342 267 231 15 chr9 121228585 121228780 -21042664 + MIR SINE MIR 3 239 -23 1555 169 56 30 chr9 121229275 121229577 -21041867 + AluJb SINE Alu 3 312 0 2740 10 0 0 chr9 121229690 121229986 -21041458 + AluYa5 SINE Alu 1 296 -15 457 173 0 39 chr9 121231012 121231116 -21040328 - L1PA3 LINE L1 0 6155 6056 450 319 17 92 chr9 121232525 121232763 -21038681 - MIR SINE MIR -1 261 42 200 204 0 23 chr9 121232874 121232918 -21038526 + GA-rich Low_complexity Low_complexity 2 44 0 213 315 0 55 chr9 121233685 121233758 -21037686 + L3 LINE CR1 1043 1111 -466 258 274 177 24 chr9 121235637 121235761 -21035683 - L2 LINE L2 0 3313 3171 1724 214 41 57 chr9 121236316 121236829 -21034615 + MLT1D LTR MaLR 1 505 0 225 0 0 0 chr9 121236966 121236991 -21034453 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 197 421 16 0 chr9 121237089 121237210 -21034234 - L2 LINE L2 -866 2448 2326 29 0 0 0 chr9 121238011 121238040 -21033404 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr9 121238111 121238140 -21033304 + AT_rich Low_complexity Low_complexity 1 29 0 304 350 19 0 chr9 121239443 121239546 -21031898 + L2 LINE L2 3178 3282 -31 195 282 126 41 chr9 121239622 121239779 -21031665 + MIR SINE MIR 41 211 -47 794 225 100 20 chr9 121240901 121241150 -21030294 - L1MD3 LINE L1 0 7995 7727 446 259 0 0 chr9 121242897 121242982 -21028462 - MIR3 SINE MIR -39 169 85 196 333 26 26 chr9 121243115 121243193 -21028251 - MIR3 SINE MIR -117 91 14 207 227 57 68 chr9 121243272 121243360 -21028084 - MER5A DNA MER1_type -87 102 16 29 60 0 0 chr9 121243429 121243479 -21027965 + AT_rich Low_complexity Low_complexity 1 50 0 229 342 132 0 chr9 121243589 121243703 -21027741 - MIR3 SINE MIR -1 207 79 913 241 10 5 chr9 121243716 121243919 -21027525 - MLT1B LTR MaLR 0 390 187 255 79 0 0 chr9 121243924 121243962 -21027482 + (GA)n Simple_repeat Simple_repeat 1 38 0 411 227 97 91 chr9 121243962 121244138 -21027306 - MLT1B LTR MaLR -187 187 11 2421 97 3 0 chr9 121244319 121244629 -21026815 - AluSp SINE Alu 0 313 3 462 183 67 48 chr9 121244847 121244951 -21026493 - MER63 DNA MER1_type -330 732 1 268 278 33 44 chr9 121245108 121245198 -21026246 + MIR3 SINE MIR 105 193 -15 402 309 59 43 chr9 121245219 121245475 -21025969 + MIR SINE MIR 3 262 0 219 177 16 48 chr9 121245476 121245538 -21025906 + (CTA)n Simple_repeat Simple_repeat 1 60 0 431 248 106 0 chr9 121246359 121246472 -21024972 + MER94 DNA DNA 1 125 -9 249 298 8 58 chr9 121247131 121247252 -21024192 + MIR SINE MIR 69 183 -79 1124 199 34 97 chr9 121247335 121247746 -21023698 + MLT1B LTR MaLR 5 389 -1 26 30 0 0 chr9 121247780 121247813 -21023631 + AT_rich Low_complexity Low_complexity 1 33 0 449 275 112 51 chr9 121247989 121248364 -21023080 - L1ME LINE L1 -4553 1708 1311 2225 109 0 0 chr9 121248377 121248671 -21022773 + AluSg SINE Alu 1 294 -16 382 309 114 46 chr9 121248733 121249057 -21022387 - L1ME LINE L1 -5043 1039 694 1525 274 47 33 chr9 121249114 121249792 -21021652 - L1ME LINE L1 -5378 692 27 581 319 119 17 chr9 121249826 121250180 -21021264 - MLT1J LTR MaLR -51 460 71 209 168 39 26 chr9 121250409 121250564 -21020880 + (TATAA)n Simple_repeat Simple_repeat 3 159 0 199 117 62 43 chr9 121250531 121250693 -21020751 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 * 58 47 0 0 chr9 121250728 121250814 -21020630 + AT_rich Low_complexity Low_complexity 1 86 0 186 173 40 0 chr9 121250814 121250889 -21020555 + (TATAA)n Simple_repeat Simple_repeat 5 82 0 21 57 0 0 chr9 121250891 121250926 -21020518 + AT_rich Low_complexity Low_complexity 1 35 0 1540 183 55 70 chr9 121251293 121251709 -21019735 - MER67D LTR ERV1 -104 410 1 295 344 126 20 chr9 121251877 121252028 -21019416 + MIR3 SINE MIR 42 208 0 372 266 273 0 chr9 121252332 121252471 -21018973 - MIR SINE MIR -54 208 32 180 237 51 17 chr9 121253301 121253360 -21018084 + L2 LINE L2 1677 1737 -1577 22 0 0 0 chr9 121253595 121253617 -21017827 + AT_rich Low_complexity Low_complexity 1 22 0 1564 218 30 41 chr9 121253618 121254012 -21017432 + MSTD LTR MaLR 6 395 -1 237 265 12 72 chr9 121254670 121254753 -21016691 + L2 LINE L2 3236 3313 0 521 323 64 55 chr9 121254981 121255216 -21016228 + L2 LINE L2 2810 3046 -267 302 272 16 110 chr9 121255937 121256128 -21015316 - MER5B DNA MER1_type -1 177 5 417 213 0 0 chr9 121256171 121256251 -21015193 + MER117 DNA MER1_type 18 97 -100 701 345 131 30 chr9 121256335 121256819 -21014625 - L3 LINE CR1 -50 1527 947 180 0 0 0 chr9 121256819 121256839 -21014605 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 701 345 131 30 chr9 121256839 121257066 -21014378 - L3 LINE CR1 -630 947 744 291 333 49 8 chr9 121257096 121257219 -21014225 + MIR SINE MIR 48 175 -87 526 296 8 8 chr9 121257370 121257502 -21013942 - L2 LINE L2 0 3272 3141 426 313 61 0 chr9 121257762 121257877 -21013567 + L2 LINE L2 3151 3272 0 195 129 0 0 chr9 121258137 121258168 -21013276 + (TG)n Simple_repeat Simple_repeat 2 32 0 250 130 22 22 chr9 121258852 121258898 -21012546 + MLT2C2 LTR ERVL 161 206 -258 5235 68 17 21 chr9 121258920 121259585 -21011859 - L1PA7 LINE L1 -4 6154 5479 437 32 32 0 chr9 121259585 121259648 -21011796 - AluY SINE Alu -8 303 239 5235 68 17 21 chr9 121259648 121259784 -21011660 - L1PA7 LINE L1 -679 5479 5344 305 344 0 15 chr9 121259913 121260044 -21011400 + MLT2C1 LTR ERVL 269 397 0 1306 244 82 91 chr9 121260077 121260630 -21010814 + L1ME1 LINE L1 4468 5024 -1142 326 160 0 0 chr9 121260630 121260692 -21010752 + Alu SINE Alu 1 48 -254 1306 244 82 91 chr9 121260692 121261091 -21010353 + L1ME1 LINE L1 5024 5470 -696 2315 100 3 3 chr9 121261091 121261401 -21010043 - AluSg SINE Alu 0 310 1 1306 244 82 91 chr9 121261401 121261681 -21009763 + L1ME1 LINE L1 5470 5751 -415 301 256 8 56 chr9 121261685 121261810 -21009634 + L1ME1 LINE L1 6043 6161 -5 412 297 128 9 chr9 121261820 121262461 -21008983 + L1ME LINE L1 4980 5684 -480 573 353 54 31 chr9 121262790 121263181 -21008263 - L2 LINE L2 -2342 972 573 766 211 16 87 chr9 121263187 121263261 -21008183 - MER45A DNA AcHobo -1409 172 94 2320 104 3 3 chr9 121263261 121263568 -21007876 + AluSx SINE Alu 1 307 -5 766 211 16 87 chr9 121263568 121263678 -21007766 - MER45A DNA AcHobo -1487 94 1 251 334 184 34 chr9 121263736 121264116 -21007328 - L2 LINE L2 -2795 519 83 409 150 158 39 chr9 121264143 121264270 -21007174 + MLT1B LTR MaLR 16 157 -233 207 321 18 0 chr9 121264746 121264802 -21006642 - L3 LINE CR1 -225 1352 1296 884 125 23 0 chr9 121264809 121264831 -21006613 - AluSg SINE Alu -160 150 130 405 0 0 0 chr9 121264831 121264876 -21006568 + (TG)n Simple_repeat Simple_repeat 2 46 0 884 125 23 0 chr9 121264876 121264981 -21006463 - AluSg SINE Alu -180 130 20 399 306 119 0 chr9 121265547 121265766 -21005678 - MIR SINE MIR 0 262 18 256 356 33 0 chr9 121266069 121266159 -21005285 - L2 LINE L2 -6 3266 3174 717 203 0 0 chr9 121266712 121266840 -21004604 + FLAM_A SINE Alu 1 128 -5 24 32 0 0 chr9 121267085 121267116 -21004328 + AT_rich Low_complexity Low_complexity 1 31 0 429 297 54 0 chr9 121267234 121267382 -21004062 + L2 LINE L2 3143 3298 -15 1646 180 0 4 chr9 121267435 121267702 -21003742 - AluJb SINE Alu -46 266 1 21 0 0 0 chr9 121267732 121267753 -21003691 + AT_rich Low_complexity Low_complexity 1 21 0 182 283 9 71 chr9 121267912 121268025 -21003419 - L2 LINE L2 -61 3252 3147 377 131 61 30 chr9 121268217 121268316 -21003128 + L1MB1 LINE L1 6066 6167 -1 27 29 0 0 chr9 121268316 121268350 -21003094 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr9 121268847 121268883 -21002561 + AT_rich Low_complexity Low_complexity 1 36 0 790 281 124 44 chr9 121269162 121269445 -21001999 - HAL1 LINE L1 -170 2337 2078 2091 119 7 3 chr9 121269445 121269747 -21001697 + AluSx SINE Alu 1 303 -9 790 281 124 44 chr9 121269747 121270076 -21001368 - HAL1 LINE L1 -429 2078 1676 2281 160 14 96 chr9 121270106 121270667 -21000777 + L1MA9 LINE L1 5798 6312 0 673 316 109 20 chr9 121270717 121271715 -20999729 - HAL1 LINE L1 -1076 1431 326 22 0 0 0 chr9 121271812 121271834 -20999610 + AT_rich Low_complexity Low_complexity 1 22 0 2124 169 41 14 chr9 121271835 121272190 -20999254 - L1PB4 LINE L1 -1 6155 5784 252 0 0 0 chr9 121272190 121272218 -20999226 + (TG)n Simple_repeat Simple_repeat 2 29 0 2124 169 41 14 chr9 121272218 121272300 -20999144 - L1PB4 LINE L1 -372 5784 5706 21 36 0 0 chr9 121272363 121272391 -20999053 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 121272735 121272758 -20998686 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr9 121272897 121272931 -20998513 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr9 121273003 121273030 -20998414 + AT_rich Low_complexity Low_complexity 1 27 0 2050 133 0 0 chr9 121273206 121273491 -20997953 - AluSg SINE Alu -25 285 1 30 45 0 0 chr9 121274667 121274711 -20996733 + AT_rich Low_complexity Low_complexity 1 44 0 254 171 57 0 chr9 121274941 121275011 -20996433 + L1MA8 LINE L1 6213 6286 -5 290 276 38 48 chr9 121275152 121275257 -20996187 + MIR SINE MIR 67 170 -92 382 253 187 13 chr9 121275279 121275429 -20996015 + MER5A DNA MER1_type 13 188 -1 227 238 25 50 chr9 121275430 121275510 -20995934 + MIR SINE MIR 182 259 -3 * 719 235 6 24 chr9 121275504 121275670 -20995774 - L2 LINE L2 -1 3312 3150 21 36 0 0 chr9 121275670 121275698 -20995746 + AT_rich Low_complexity Low_complexity 1 28 0 762 241 64 0 chr9 121276594 121276781 -20994663 + MER105 DNA DNA 1 199 -5 357 268 177 6 chr9 121277405 121277569 -20993875 - MIR SINE MIR -10 252 61 1351 74 8 0 chr9 121277743 121277936 -20993508 + L1P2 LINE L1 5385 5586 -568 266 61 0 0 chr9 121278722 121278755 -20992689 + MIR SINE MIR 218 250 -12 318 369 81 27 chr9 121279020 121279242 -20992202 - MIR SINE MIR -1 261 28 26 0 0 0 chr9 121280021 121280047 -20991397 + AT_rich Low_complexity Low_complexity 1 26 0 455 255 9 0 chr9 121280076 121280182 -20991262 - MLT1G LTR MaLR 0 590 484 702 262 49 61 chr9 121280224 121280487 -20990957 + MIR SINE MIR 3 262 0 1618 157 52 0 chr9 121280525 121280793 -20990651 + AluJb SINE Alu 16 297 -15 642 260 175 44 chr9 121280794 121281069 -20990375 - MLT1G LTR MaLR -97 433 137 292 330 46 58 chr9 121281929 121282102 -20989342 - MER5B DNA MER1_type -4 174 4 652 348 98 23 chr9 121282573 121283145 -20988299 + L2 LINE L2 2702 3309 -4 269 323 88 3 chr9 121283598 121283759 -20987685 + MIR SINE MIR 1 180 -66 207 296 241 0 chr9 121283858 121283966 -20987478 - L2 LINE L2 -2 3311 3178 21 0 0 0 chr9 121284022 121284043 -20987401 + AT_rich Low_complexity Low_complexity 1 21 0 619 247 36 17 chr9 121284646 121284913 -20986531 + L1ME LINE L1 5218 5489 -743 22 70 0 0 chr9 121286006 121286049 -20985395 + AT_rich Low_complexity Low_complexity 1 43 0 314 320 64 13 chr9 121286275 121286431 -20985013 + L1ME LINE L1 5521 5684 -437 1365 118 5 5 chr9 121286797 121286992 -20984452 - AluSg/x SINE Alu -13 299 105 199 345 103 12 chr9 121287180 121287345 -20984099 + L2 LINE L2 3007 3186 -86 2230 109 0 10 chr9 121287539 121287851 -20983593 + AluY SINE Alu 1 309 -2 389 269 83 78 chr9 121288838 121289031 -20982413 - L3 LINE CR1 -9 1568 1375 698 261 107 0 chr9 121289880 121290095 -20981349 - MIR SINE MIR 0 262 25 281 315 33 5 chr9 121290264 121290448 -20980996 + L1M4 LINE L1 4476 4664 -1482 205 171 0 0 chr9 121291119 121291154 -20980290 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 226 174 22 0 chr9 121291446 121291492 -20979952 - MLT1K LTR MaLR -49 539 493 297 307 55 73 chr9 121291500 121291653 -20979791 - MIR SINE MIR -63 145 5 299 240 8 99 chr9 121292324 121292445 -20978999 - MER52A LTR ERV1 -435 1320 1211 1466 182 24 107 chr9 121292553 121293153 -20978291 - MER52A LTR ERV1 -406 1349 662 195 306 78 82 chr9 121294391 121294623 -20976821 + L2 LINE L2 2989 3219 -94 365 212 0 71 chr9 121295101 121295186 -20976258 + AluSq/x SINE Alu 55 133 -169 244 277 53 43 chr9 121296615 121296709 -20974735 + L2 LINE L2 3178 3272 0 186 43 0 0 chr9 121297488 121297511 -20973933 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1481 229 17 32 chr9 121297942 121298352 -20973092 + L1MD1 LINE L1 3953 4356 -1790 2183 253 46 55 chr9 121298509 121299492 -20971952 + L1MD1 LINE L1 4357 5330 -816 2081 188 53 52 chr9 121299493 121300245 -20971199 + L1MD1 LINE L1 5403 6242 0 334 352 63 25 chr9 121300506 121300821 -20970623 - MLT1K LTR MaLR -116 472 146 1869 118 11 4 chr9 121300998 121301269 -20970175 - AluSq SINE Alu -13 300 28 1738 249 71 37 chr9 121301862 121302408 -20969036 - MLT1E2 LTR MaLR 0 626 62 457 368 7 0 chr9 121302766 121302918 -20968526 + MIR3 SINE MIR 36 188 -20 1328 298 54 51 chr9 121353084 121353238 -20918206 - L2 LINE L2 -817 2497 2345 5950 54 3 5 chr9 121353238 121353991 -20917453 + L1PA8 LINE L1 5419 6169 -3 1328 298 54 51 chr9 121353991 121354481 -20916963 - L2 LINE L2 -969 2345 1851 30 59 0 0 chr9 121356012 121356063 -20915381 + AT_rich Low_complexity Low_complexity 1 51 0 269 229 49 16 chr9 121356593 121356654 -20914790 - MIR SINE MIR -171 91 29 1749 150 3 31 chr9 121357023 121357317 -20914127 + AluSx SINE Alu 1 286 -26 350 269 74 19 chr9 121357996 121358104 -20913340 + MIR SINE MIR 32 145 -63 2083 120 3 7 chr9 121358240 121358539 -20912905 + AluSq SINE Alu 1 298 -15 189 94 0 0 chr9 121358820 121358852 -20912592 + (T)n Simple_repeat Simple_repeat 1 32 0 467 335 35 27 chr9 121359399 121359632 -20911812 - MIR SINE MIR -19 243 10 266 264 16 33 chr9 121359702 121359823 -20911621 + CT-rich Low_complexity Low_complexity 5 123 0 259 227 15 0 chr9 121361004 121361070 -20910374 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 215 270 79 0 chr9 121361280 121361343 -20910101 + MIR SINE MIR 116 183 -79 789 314 46 8 chr9 121362350 121362723 -20908721 + L1MC4 LINE L1 7520 7906 -136 375 342 122 38 chr9 121363102 121363421 -20908023 + L3 LINE CR1 1228 1573 -4 279 310 81 0 chr9 121364046 121364133 -20907311 + MIR3 SINE MIR 83 176 -32 253 323 100 14 chr9 121364158 121364313 -20907131 + MIR SINE MIR 9 171 -80 1310 261 30 22 chr9 121364559 121364930 -20906514 + MLT1A2 LTR MaLR 1 374 0 1095 288 88 42 chr9 121365459 121365666 -20905778 + L2 LINE L2 2474 2670 -643 2221 96 4 0 chr9 121365666 121365977 -20905467 - AluSp SINE Alu 0 312 1 1095 288 88 42 chr9 121365977 121366550 -20904894 + L2 LINE L2 2670 3295 -18 317 419 22 12 chr9 121367207 121367615 -20903829 - L3 LINE CR1 -157 1420 1009 507 319 84 21 chr9 121367853 121368091 -20903353 + MIR SINE MIR 5 257 -5 1519 217 7 3 chr9 121368114 121368404 -20903040 + AluJo SINE Alu 1 291 -21 2859 250 83 32 chr9 121368406 121369568 -20901876 - L1ME2 LINE L1 -8 6090 4989 180 0 0 0 chr9 121369568 121369588 -20901856 + (TG)n Simple_repeat Simple_repeat 2 21 0 2859 250 83 32 chr9 121369588 121370724 -20900720 - L1ME2 LINE L1 -1109 4989 3674 869 258 113 17 chr9 121370828 121371289 -20900155 - L1ME2 LINE L1 -3432 2648 2144 5301 139 6 10 chr9 121371304 121372668 -20898776 - L1PA16 LINE L1 -9 6157 4783 2184 194 6 22 chr9 121372668 121373163 -20898281 + L1PA16 LINE L1 4313 4799 -1347 717 290 70 73 chr9 121373217 121374329 -20897115 - L1ME2 LINE L1 -4092 2169 1061 22 35 0 0 chr9 121374454 121374483 -20896961 + AT_rich Low_complexity Low_complexity 1 29 0 316 325 56 26 chr9 121374514 121374745 -20896699 - L1ME2 LINE L1 -5522 739 502 393 297 103 68 chr9 121374960 121375388 -20896056 - L1ME2 LINE L1 -5617 453 11 23 54 0 0 chr9 121375390 121375427 -20896017 + AT_rich Low_complexity Low_complexity 1 37 0 259 265 61 41 chr9 121375482 121375580 -20895864 - L2 LINE L2 -727 2587 2488 2323 310 77 72 chr9 121375580 121377159 -20894285 - L2 LINE L2 -934 2380 794 1044 316 85 50 chr9 121378277 121378834 -20892610 - HERV16 LTR ERVL -2536 2460 1877 690 262 4 76 chr9 121378834 121379059 -20892385 + MER63A DNA MER1_type 2 210 0 1044 316 85 50 chr9 121379059 121379137 -20892307 - HERV16 LTR ERVL -3119 1877 1803 298 346 42 28 chr9 121379604 121379887 -20891557 - HERV16 LTR ERVL -3752 1244 958 543 308 19 34 chr9 121381032 121381240 -20890204 - LTR16C LTR ERVL -197 294 90 1943 154 26 52 chr9 121382026 121382408 -20889036 + THE1C LTR MaLR 1 372 -3 8627 132 30 77 chr9 121382411 121384069 -20887375 + THE1C-int LTR MaLR 1 1580 0 2209 140 36 6 chr9 121384069 121384433 -20887011 + THE1C LTR MaLR 1 375 0 225 361 37 0 chr9 121384504 121384612 -20886832 + MIR3 SINE MIR 43 154 -54 4295 136 35 36 chr9 121384613 121385386 -20886058 - MER4E LTR ERV1 0 779 8 25 0 0 0 chr9 121385596 121385621 -20885823 + AT_rich Low_complexity Low_complexity 1 25 0 1992 152 0 19 chr9 121385645 121385955 -20885489 + AluSx SINE Alu 1 304 -8 200 299 60 45 chr9 121386458 121386525 -20884919 + L2 LINE L2 3193 3260 -12 6223 127 38 60 chr9 121386776 121387093 -20884351 + Tigger3b DNA MER2_type 1 324 -2704 192 40 0 0 chr9 121387093 121387118 -20884326 + (CA)n Simple_repeat Simple_repeat 2 26 0 6223 127 38 60 chr9 121387118 121387357 -20884087 + Tigger3b DNA MER2_type 324 567 -2461 1714 162 0 64 chr9 121387357 121387685 -20883759 - AluSx SINE Alu -1 311 5 6223 127 38 60 chr9 121387685 121388380 -20883064 + Tigger3b DNA MER2_type 567 1230 -1 322 287 23 16 chr9 121388381 121388510 -20882934 + (TA)n Simple_repeat Simple_repeat 1 130 0 215 247 39 65 chr9 121388709 121388786 -20882658 - L2 LINE L2 -3 3310 3236 232 336 47 0 chr9 121389074 121389181 -20882263 + MIR3 SINE MIR 85 196 -12 256 308 8 42 chr9 121389198 121389318 -20882126 - LTR16C LTR ERVL -5 486 371 230 351 90 40 chr9 121389339 121389561 -20881883 - LTR16C LTR ERVL -91 400 168 484 243 11 77 chr9 121389981 121390162 -20881282 - MIR SINE MIR -10 252 84 243 0 0 0 chr9 121390190 121390217 -20881227 + (TA)n Simple_repeat Simple_repeat 1 27 0 1663 209 46 0 chr9 121390761 121391110 -20880334 - MLT1A1 LTR MaLR 0 365 1 445 369 23 5 chr9 121391661 121391875 -20879569 - L3 LINE CR1 -130 1447 1230 398 379 34 58 chr9 121392137 121392216 -20879228 + L2 LINE L2 2854 2933 -339 659 263 11 0 chr9 121392216 121392391 -20879053 - MER5B DNA MER1_type 0 178 2 398 379 34 58 chr9 121392391 121392725 -20878719 + L2 LINE L2 2933 3257 -15 488 313 51 11 chr9 121393050 121393226 -20878218 - MIR SINE MIR -14 248 66 244 270 150 10 chr9 121393659 121393759 -20877685 - MIR SINE MIR -74 134 21 450 250 56 50 chr9 121394830 121395010 -20876434 + MIR SINE MIR 82 262 0 1942 180 9 0 chr9 121395029 121395373 -20876071 + MER7A DNA MER2_type 1 345 -1 1179 197 7 60 chr9 121395640 121395909 -20875535 + AluJo SINE Alu 42 296 -16 263 257 65 0 chr9 121396058 121396142 -20875302 + MIR SINE MIR 53 147 -61 340 207 0 12 chr9 121396261 121396343 -20875101 + ORSL DNA AcHobo 37 117 -158 2205 87 0 40 chr9 121396437 121396735 -20874709 - AluSg SINE Alu -24 286 1 638 199 103 50 chr9 121397180 121397441 -20874003 + ORSL DNA AcHobo 1 275 0 209 133 67 0 chr9 121397801 121397846 -20873598 + A-rich Low_complexity Low_complexity 4 51 0 531 324 194 5 chr9 121397934 121398150 -20873294 - L3 LINE CR1 -967 610 354 197 335 10 92 chr9 121398480 121398686 -20872758 - L3 LINE CR1 -1297 280 92 325 313 69 35 chr9 121398751 121398950 -20872494 + MIR SINE MIR 16 217 -45 482 309 5 10 chr9 121400041 121400235 -20871209 + L1ME LINE L1 5578 5770 -351 2099 183 23 46 chr9 121400364 121400612 -20870832 + L1MA10 LINE L1 5863 6097 -237 2027 100 41 0 chr9 121400612 121400909 -20870535 + AluSc SINE Alu 1 308 0 2099 183 23 46 chr9 121400909 121401139 -20870305 + L1MA10 LINE L1 6097 6331 -3 1103 117 0 22 chr9 121401440 121401620 -20869824 - L1MA4A LINE L1 -6 6297 6122 1484 203 53 79 chr9 121402488 121402898 -20868546 - L1MD2 LINE L1 -4 6355 5957 2038 147 0 0 chr9 121402898 121403191 -20868253 + AluSx SINE Alu 3 295 -17 1484 203 53 79 chr9 121403191 121403247 -20868197 - L1MD2 LINE L1 -402 5957 5901 21 57 0 0 chr9 121403406 121403441 -20868003 + AT_rich Low_complexity Low_complexity 1 35 0 210 222 0 32 chr9 121403593 121403656 -20867788 + (TA)n Simple_repeat Simple_repeat 1 61 0 320 328 37 80 chr9 121403735 121404034 -20867410 - L1ME3A LINE L1 -242 5928 5643 1751 209 147 7 chr9 121404079 121404501 -20866943 - MLT1D LTR MaLR -3 502 22 293 266 46 21 chr9 121404971 121405077 -20866367 - L1ME3A LINE L1 -501 5620 5509 180 0 0 0 chr9 121405395 121405415 -20866029 + (TA)n Simple_repeat Simple_repeat 1 20 0 394 234 36 68 chr9 121405515 121405707 -20865737 - L1ME3A LINE L1 -1075 5071 4886 711 361 74 18 chr9 121405775 121406168 -20865276 - L2 LINE L2 -24 3289 2875 26 74 0 0 chr9 121406461 121406515 -20864929 + AT_rich Low_complexity Low_complexity 1 54 0 291 258 62 24 chr9 121406640 121406849 -20864595 - L1ME3A LINE L1 -1715 4431 4215 29 0 0 0 chr9 121406879 121406908 -20864536 + AT_rich Low_complexity Low_complexity 1 29 0 327 312 68 19 chr9 121407033 121407238 -20864206 - L1ME3A LINE L1 -2193 3953 3739 27 29 0 0 chr9 121408233 121408267 -20863177 + AT_rich Low_complexity Low_complexity 1 34 0 498 366 11 6 chr9 121408559 121408734 -20862710 - MIR SINE MIR -77 185 10 259 303 54 28 chr9 121408735 121408865 -20862579 - MIR SINE MIR -60 148 38 340 340 54 27 chr9 121409303 121409450 -20861994 - L2 LINE L2 -1 3271 3121 582 309 51 9 chr9 121410147 121410364 -20861080 + MIR SINE MIR 12 237 -25 193 330 31 31 chr9 121410521 121410618 -20860826 - MIR SINE MIR -93 169 73 258 282 80 75 chr9 121411127 121411340 -20860104 + L2 LINE L2 3098 3311 -2 247 273 10 63 chr9 121412377 121412506 -20858938 - MIR SINE MIR -81 127 2 21 0 0 0 chr9 121412617 121412638 -20858806 + AT_rich Low_complexity Low_complexity 1 21 0 1067 318 104 33 chr9 121413078 121413866 -20857578 + L2 LINE L2 2464 3313 0 266 383 66 6 chr9 121414311 121414494 -20856950 - MIR SINE MIR -67 195 2 381 349 113 5 chr9 121416792 121417004 -20854440 + MIR SINE MIR 7 241 -21 351 323 37 24 chr9 121417693 121417857 -20853587 - L1ME3A LINE L1 -219 5951 5786 235 356 57 36 chr9 121417917 121418111 -20853333 + L2 LINE L2 2601 2798 -516 6540 90 4 0 chr9 121420209 121421913 -20849531 - L1PA8 LINE L1 0 6172 4467 3420 126 4 4 chr9 121421913 121422447 -20848997 + L1PA8 LINE L1 3906 4439 -1707 2254 137 25 6 chr9 121422526 121422883 -20848561 - THE1B LTR MaLR 0 364 1 1492 156 19 19 chr9 121423863 121424120 -20847324 - AluJo SINE Alu -45 267 11 492 190 17 0 chr9 121424711 121424827 -20846617 - L1MA4 LINE L1 -2 6298 6181 455 333 40 48 chr9 121424839 121425067 -20846377 - MIR SINE MIR -17 245 20 262 314 44 7 chr9 121425130 121425267 -20846177 + MER117 DNA MER1_type 1 142 -55 438 288 0 55 chr9 121425296 121425442 -20846002 - MIR3 SINE MIR -48 160 23 286 303 8 50 chr9 121426396 121426515 -20844929 - MIR3 SINE MIR -80 128 15 2663 102 14 3 chr9 121426776 121427147 -20844297 - THE1C LTR MaLR 0 375 1 204 260 68 27 chr9 121427640 121427713 -20843731 + L2 LINE L2 3238 3313 0 194 242 45 15 chr9 121427753 121427819 -20843625 + MIR SINE MIR 164 231 -31 1736 306 127 44 chr9 121428055 121429232 -20842212 - L2 LINE L2 0 3313 2039 3971 72 2 4 chr9 121429232 121429744 -20841700 - MER9 LTR ERVK 0 511 1 1736 306 127 44 chr9 121429744 121429805 -20841639 - L2 LINE L2 -1274 2039 1984 2213 197 22 11 chr9 121429806 121430253 -20841191 - Tigger2 DNA MER2_type 0 2718 2267 387 203 0 0 chr9 121430237 121430306 -20841138 - Tigger2 DNA MER2_type -2649 69 1 * 289 286 11 0 chr9 121430318 121430409 -20841035 - L2 LINE L2 -1344 1970 1879 182 279 0 23 chr9 121430438 121430481 -20840963 + MIR3 SINE MIR 15 56 -152 198 71 0 0 chr9 121430703 121430731 -20840713 + (CA)n Simple_repeat Simple_repeat 2 29 0 1603 174 24 17 chr9 121431464 121431752 -20839692 + AluJb SINE Alu 3 292 -20 1136 156 109 28 chr9 121431896 121432107 -20839337 - MER1B DNA MER1_type 0 339 112 296 261 75 75 chr9 121432637 121432836 -20838608 + L2 LINE L2 3010 3208 -105 526 258 95 71 chr9 121432892 121433175 -20838269 + MER69 DNA AcHobo 67 356 -2170 5141 156 5 32 chr9 121433456 121434562 -20836882 - L1PA16 LINE L1 -7 6159 5086 1924 107 0 11 chr9 121434595 121434856 -20836588 - AluY SINE Alu -13 298 41 1305 229 90 39 chr9 121434877 121435520 -20835924 + MER69 DNA AcHobo 1848 2523 -3 1617 101 0 0 chr9 121436307 121436525 -20834919 + LTR46-int LTR ERV1 6768 6985 0 2097 132 35 95 chr9 121436525 121436957 -20834487 + LTR46 LTR ERV1 1 406 -54 23 33 0 0 chr9 121438033 121438063 -20833381 + AT_rich Low_complexity Low_complexity 1 30 0 379 351 60 7 chr9 121438119 121438270 -20833174 - MIR SINE MIR -99 163 5 346 364 0 0 chr9 121439934 121440066 -20831378 - MIR3 SINE MIR 0 208 77 425 236 11 28 chr9 121440559 121440741 -20830703 + CT-rich Low_complexity Low_complexity 2 180 0 298 306 8 73 chr9 121440883 121441007 -20830437 - L2 LINE L2 -181 3091 2976 327 104 0 0 chr9 121441026 121441074 -20830370 + (GA)n Simple_repeat Simple_repeat 1 48 0 864 226 44 41 chr9 121441145 121441512 -20829932 + MSTC LTR MaLR 19 428 0 5595 239 36 70 chr9 121441514 121443304 -20828140 + MSTC-int LTR MaLR 2 1731 -4 355 146 0 0 chr9 121443308 121443363 -20828081 + MSTC LTR MaLR 1 55 -341 607 276 46 25 chr9 121443377 121443616 -20827828 + MSTC LTR MaLR 185 428 0 22 56 0 0 chr9 121443913 121443949 -20827495 + AT_rich Low_complexity Low_complexity 1 36 0 609 329 81 21 chr9 121445036 121445456 -20825988 + LTR16B LTR ERVL 1 445 -19 412 355 133 0 chr9 121445483 121445694 -20825750 - L2 LINE L2 -244 3069 2831 235 326 103 34 chr9 121446908 121447083 -20824361 + MIR SINE MIR 29 215 -47 404 200 10 0 chr9 121447909 121448009 -20823435 + GA-rich Low_complexity Low_complexity 2 102 0 229 250 67 0 chr9 121448065 121448125 -20823319 - MIR SINE MIR -3 259 196 221 333 13 19 chr9 121448136 121448295 -20823149 + (CATA)n Simple_repeat Simple_repeat 3 160 0 429 310 54 27 chr9 121448296 121448480 -20822964 - MIR SINE MIR -71 191 3 26 0 0 0 chr9 121449396 121449422 -20822022 + AT_rich Low_complexity Low_complexity 1 26 0 470 60 0 15 chr9 121449708 121449775 -20821669 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 500 356 45 60 chr9 121451180 121451850 -20819594 + L2 LINE L2 2580 3241 -31 196 233 171 0 chr9 121452324 121452426 -20819018 + MIR SINE MIR 114 235 -27 216 315 46 19 chr9 121452484 121452592 -20818852 - L2 LINE L2 0 3313 3203 1933 105 0 0 chr9 121452845 121453093 -20818351 + AluSx SINE Alu 64 311 -1 2866 85 0 0 chr9 121453391 121453755 -20817689 + THE1B LTR MaLR 1 364 0 757 18 0 73 chr9 121453988 121454122 -20817322 - L1PA2 LINE L1 0 6155 6053 572 320 61 53 chr9 121454128 121454662 -20816782 - L2 LINE L2 -60 3253 2718 317 181 0 14 chr9 121454662 121454734 -20816710 - L1PA15 LINE L1 0 6165 6095 572 320 61 53 chr9 121454734 121454874 -20816570 - L2 LINE L2 -595 2718 2581 400 291 31 0 chr9 121455298 121455425 -20816019 + MIR SINE MIR 132 262 0 22 35 0 0 chr9 121455426 121455455 -20815989 + AT_rich Low_complexity Low_complexity 1 29 0 1737 130 43 23 chr9 121455515 121455814 -20815630 - AluSx SINE Alu -7 305 1 1907 118 0 31 chr9 121456016 121456303 -20815141 + AluSx SINE Alu 1 278 -34 344 148 0 0 chr9 121456303 121456357 -20815087 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 924 137 23 0 chr9 121456358 121456533 -20814911 + GA-rich Low_complexity Low_complexity 2 180 0 399 41 0 0 chr9 121456534 121456583 -20814861 + (GAAAA)n Simple_repeat Simple_repeat 1 49 0 304 344 102 6 chr9 121456602 121456759 -20814685 + MIR SINE MIR 54 225 -37 201 261 0 161 chr9 121457512 121457642 -20813802 - L3 LINE CR1 -140 1437 1329 243 327 82 9 chr9 121457890 121458000 -20813444 - MIR SINE MIR -143 119 2 630 293 77 6 chr9 121458123 121458304 -20813140 - MIR SINE MIR -64 198 5 323 286 70 80 chr9 121458537 121458736 -20812708 - L3 LINE CR1 -757 820 624 841 43 9 9 chr9 121459315 121459430 -20812014 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 1871 100 0 76 chr9 121459433 121459734 -20811710 - AluSg SINE Alu -32 278 1 255 241 54 36 chr9 121459734 121459846 -20811598 + MER103 DNA DNA 43 156 -10 397 239 101 0 chr9 121460960 121461069 -20810375 - MER63 DNA MER1_type -313 749 4 447 130 0 0 chr9 121461240 121461317 -20810127 + (TC)n Simple_repeat Simple_repeat 1 77 0 651 284 84 17 chr9 121461398 121461637 -20809807 + MIR SINE MIR 8 262 0 361 314 64 39 chr9 121461724 121461880 -20809564 + MIR SINE MIR 47 206 -56 238 291 42 36 chr9 121461973 121462138 -20809306 + L1ME LINE L1 5653 5818 -303 23 33 0 0 chr9 121462276 121462306 -20809138 + AT_rich Low_complexity Low_complexity 1 30 0 1968 103 3 35 chr9 121462335 121462617 -20808827 - AluSx SINE Alu -16 296 24 2767 3 0 0 chr9 121462789 121463088 -20808356 - AluYa5 SINE Alu -12 299 1 2440 80 3 3 chr9 121463203 121463544 -20807900 - AluSp SINE Alu 0 341 1 1989 122 45 7 chr9 121463902 121464190 -20807254 - AluSq SINE Alu -14 299 1 21 71 0 0 chr9 121465902 121465944 -20805500 + AT_rich Low_complexity Low_complexity 1 42 0 200 268 85 73 chr9 121466288 121466370 -20805074 - L2 LINE L2 -8 3264 3182 1388 213 51 9 chr9 121466790 121467123 -20804321 - MLT1A1 LTR MaLR 0 365 19 388 179 0 21 chr9 121467609 121467704 -20803740 + (TA)n Simple_repeat Simple_repeat 1 93 0 1341 179 7 64 chr9 121467706 121467868 -20803576 - AluJo SINE Alu -30 282 143 2281 95 0 26 chr9 121467868 121468174 -20803270 - AluSc SINE Alu -11 298 1 1341 179 7 64 chr9 121468174 121468307 -20803137 - AluJo SINE Alu -169 143 4 191 318 119 48 chr9 121468956 121469082 -20802362 + MIR SINE MIR 1 135 -127 446 314 19 13 chr9 121469131 121469290 -20802154 - MIR SINE MIR -26 236 77 320 324 111 42 chr9 121469431 121469647 -20801797 - MIR SINE MIR 0 262 32 416 202 20 0 chr9 121469687 121469786 -20801658 + CT-rich Low_complexity Low_complexity 3 103 0 319 303 97 28 chr9 121469905 121470050 -20801394 - MIR SINE MIR -87 175 21 737 131 23 29 chr9 121470704 121470879 -20800565 + CT-rich Low_complexity Low_complexity 4 177 0 485 311 79 70 chr9 121470977 121471531 -20799913 - MLT1K LTR MaLR -17 571 13 204 167 39 51 chr9 121472533 121472611 -20798833 + T-rich Low_complexity Low_complexity 5 81 0 8864 38 2 216 chr9 121472611 121474373 -20797071 - SVA Other Other 0 1386 1 360 43 0 0 chr9 121474382 121474428 -20797016 + (GGGAGA)n Simple_repeat Simple_repeat 2 47 0 237 196 0 0 chr9 121476808 121476859 -20794585 + (TATG)n Simple_repeat Simple_repeat 2 52 0 199 405 17 9 chr9 121477235 121477351 -20794093 - MIR3 SINE MIR -3 205 89 656 256 58 26 chr9 121478208 121478493 -20792951 + MLT1H LTR MaLR 15 274 -289 335 277 0 21 chr9 121478535 121478629 -20792815 + GA-rich Low_complexity Low_complexity 6 97 0 207 69 0 0 chr9 121478635 121478664 -20792780 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 2122 87 29 32 chr9 121478710 121479022 -20792422 + AluY SINE Alu 1 311 0 831 266 42 4 chr9 121479461 121479698 -20791746 + MIR SINE MIR 17 262 0 3452 159 12 51 chr9 121479784 121480543 -20790901 - L1MB3 LINE L1 -2 6181 5453 339 363 66 66 chr9 121480546 121481000 -20790444 - L2 LINE L2 0 3272 2819 1523 233 51 9 chr9 121481035 121481465 -20789979 + MLT1C LTR MaLR 20 467 0 213 175 25 0 chr9 121481668 121481708 -20789736 + (TAA)n Simple_repeat Simple_repeat 3 43 0 200 250 0 0 chr9 121481712 121481752 -20789692 - L2 LINE L2 -12 3260 3221 1058 162 0 0 chr9 121481847 121482014 -20789430 - FRAM SINE Alu -1 175 9 423 0 0 0 chr9 121482731 121482778 -20788666 + (TG)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr9 121482983 121483004 -20788440 + AT_rich Low_complexity Low_complexity 1 21 0 298 306 69 66 chr9 121483063 121483380 -20788064 - MLT1H LTR MaLR -102 447 130 3326 74 11 49 chr9 121483402 121483873 -20787571 + MLT2A2 LTR ERVL 1 453 0 200 326 65 11 chr9 121483998 121484090 -20787354 - MIR SINE MIR -112 150 54 589 290 36 49 chr9 121484369 121484593 -20786851 - MER58A DNA MER1_type -3 221 1 234 338 25 0 chr9 121484616 121484696 -20786748 + L2 LINE L2 3231 3312 -1 1088 252 37 28 chr9 121484987 121485340 -20786104 - MLT1D LTR MaLR -9 496 141 307 326 126 0 chr9 121486083 121486218 -20785226 + MIR SINE MIR 108 259 -3 272 296 14 0 chr9 121486607 121486678 -20784766 + (CATG)n Simple_repeat Simple_repeat 3 74 0 26 0 0 0 chr9 121488729 121488755 -20782689 + AT_rich Low_complexity Low_complexity 1 26 0 195 352 88 16 chr9 121489863 121489988 -20781456 - L2 LINE L2 -3 3269 3136 29 70 0 0 chr9 121490362 121490419 -20781025 + AT_rich Low_complexity Low_complexity 1 57 0 2228 137 11 110 chr9 121490519 121490561 -20780883 - MSTB LTR MaLR 0 426 381 2103 75 14 7 chr9 121490561 121490863 -20780581 + AluY SINE Alu 1 304 0 2228 137 11 110 chr9 121490863 121491292 -20780152 - MSTB LTR MaLR -45 381 1 401 323 6 42 chr9 121491326 121491493 -20779951 - MIR SINE MIR -28 234 74 264 271 29 32 chr9 121491494 121491646 -20779798 - MLT1A1 LTR MaLR 0 395 249 702 235 15 45 chr9 121491690 121491890 -20779554 - MLT1A1 LTR MaLR -169 196 3 22 0 0 0 chr9 121491898 121491920 -20779524 + AT_rich Low_complexity Low_complexity 1 22 0 2321 179 17 11 chr9 121491920 121492385 -20779059 - L1MC1 LINE L1 -9 6324 5857 1732 178 82 33 chr9 121492388 121492918 -20778526 - MLT2A2 LTR ERVL 0 554 1 487 125 0 12 chr9 121492922 121493002 -20778442 - L1MC1 LINE L1 -479 5854 5776 1754 220 60 14 chr9 121493015 121493534 -20777910 + L1MC/D LINE L1 4404 4946 -1200 434 248 9 0 chr9 121493568 121493673 -20777771 - MLT1A1 LTR MaLR -215 150 45 2630 174 49 1 chr9 121493690 121494459 -20776985 + L1MC/D LINE L1 4978 5781 -552 21 36 0 0 chr9 121494516 121494544 -20776900 + AT_rich Low_complexity Low_complexity 1 28 0 1694 134 0 4 chr9 121494574 121494828 -20776616 - AluSc SINE Alu -16 293 41 293 352 74 31 chr9 121494937 121495099 -20776345 - MIR SINE MIR -87 175 7 1510 203 10 29 chr9 121495837 121496147 -20775297 - AluJb SINE Alu -8 304 1 342 333 97 26 chr9 121496568 121496763 -20774681 - MIR SINE MIR -50 212 4 2147 123 0 22 chr9 121497731 121498048 -20773396 - AluY SINE Alu -1 310 1 416 325 48 21 chr9 121498224 121498412 -20773032 + MIR SINE MIR 43 235 -27 421 355 104 48 chr9 121498600 121498720 -20772724 + L2 LINE L2 2474 2586 -727 2178 120 0 3 chr9 121498720 121499011 -20772433 + AluSg SINE Alu 1 290 -20 421 355 104 48 chr9 121499011 121499679 -20771765 + L2 LINE L2 2586 3312 -1 292 330 25 25 chr9 121499944 121500062 -20771382 - L2 LINE L2 -5 3308 3191 856 255 0 9 chr9 121500064 121500276 -20771168 - MER20 DNA MER1_type 0 219 10 216 339 44 44 chr9 121500449 121500629 -20770815 - L2 LINE L2 -237 3035 2856 238 357 0 0 chr9 121500779 121500863 -20770581 - L2 LINE L2 -685 2629 2546 23 33 0 0 chr9 121501553 121501583 -20769861 + AT_rich Low_complexity Low_complexity 1 30 0 2280 91 3 3 chr9 121501967 121502275 -20769169 + AluSg SINE Alu 1 308 -2 257 257 14 0 chr9 121502504 121502574 -20768870 + GA-rich Low_complexity Low_complexity 3 73 0 992 104 6 28 chr9 121502785 121502967 -20768477 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 372 299 140 0 chr9 121503954 121504118 -20767326 - MIR SINE MIR -10 252 66 1714 147 68 0 chr9 121504450 121504737 -20766707 - AluSx SINE Alu 0 305 1 25 31 0 0 chr9 121506360 121506392 -20765052 + AT_rich Low_complexity Low_complexity 1 32 0 256 323 100 14 chr9 121506926 121507081 -20764363 - MIR SINE MIR -80 128 9 276 310 81 0 chr9 121507106 121507193 -20764251 - MIR3 SINE MIR -32 176 83 364 342 122 38 chr9 121507817 121508136 -20763308 - L3 LINE CR1 -4 1573 1228 2833 260 84 3 chr9 121508515 121509533 -20761911 - L1MC4 LINE L1 -136 7906 6806 689 114 25 19 chr9 121509555 121509713 -20761731 + CT-rich Low_complexity Low_complexity 2 160 0 1708 171 6 34 chr9 121509744 121510065 -20761379 - AluJb SINE Alu 0 312 1 389 263 44 0 chr9 121510068 121510205 -20761239 - L1MC4 LINE L1 -1236 6806 6664 227 70 0 70 chr9 121510413 121510456 -20760988 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 337 171 77 8 chr9 121510785 121510902 -20760542 + CT-rich Low_complexity Low_complexity 5 129 0 1083 183 0 72 chr9 121510929 121511164 -20760280 - AluJo SINE Alu -94 218 1 201 206 15 15 chr9 121512434 121512502 -20758942 + (TTAAA)n Simple_repeat Simple_repeat 4 71 0 21 36 0 0 chr9 121512512 121512540 -20758904 + AT_rich Low_complexity Low_complexity 1 28 0 195 390 17 17 chr9 121512540 121512658 -20758786 - MIR SINE MIR -68 140 23 217 0 61 0 chr9 121513014 121513047 -20758397 + (CTATA)n Simple_repeat Simple_repeat 4 38 0 202 350 10 50 chr9 121513938 121514038 -20757406 + L2 LINE L2 3154 3249 -23 519 278 43 19 chr9 121514101 121514263 -20757181 - MER5A DNA MER1_type -23 166 1 * 628 273 122 40 chr9 121514263 121514563 -20756881 - L3b LINE CR1 -104 1479 1155 202 258 54 40 chr9 121514810 121514940 -20756504 + MIR SINE MIR 60 192 -70 327 324 65 0 chr9 121515568 121515707 -20755737 - MIR SINE MIR -34 228 81 789 224 10 16 chr9 121515764 121515956 -20755488 - MLT1A1 LTR MaLR -1 364 174 2846 13 0 0 chr9 121516042 121516356 -20755088 + AluYb8 SINE Alu 1 314 -4 191 311 156 0 chr9 121516845 121516935 -20754509 - MIR SINE MIR -76 186 83 264 338 32 26 chr9 121517623 121517777 -20753667 - MIR SINE MIR -48 214 60 357 82 0 0 chr9 121517866 121517915 -20753529 + (TG)n Simple_repeat Simple_repeat 2 50 0 500 147 18 37 chr9 121517962 121518071 -20753373 - L1PA16 LINE L1 -1 6816 6710 13175 231 24 11 chr9 121518095 121523072 -20748372 - L1PA16 LINE L1 -188 6629 1583 1759 189 0 14 chr9 121523072 121523368 -20748076 - AluJb SINE Alu -20 292 1 13175 231 24 11 chr9 121523368 121523587 -20747857 - L1PA16 LINE L1 -5234 1583 1368 512 353 5 14 chr9 121523906 121524124 -20747320 - L1PA16 LINE L1 -6571 216 1 290 326 31 8 chr9 121524153 121524282 -20747162 + MIR SINE MIR 120 251 -11 187 229 0 0 chr9 121526201 121526236 -20745208 + L2 LINE L2 3024 3058 -255 825 310 24 4 chr9 121526648 121526903 -20744541 - MIR SINE MIR 0 262 3 527 290 16 42 chr9 121527310 121527503 -20743941 + MIR3 SINE MIR 6 193 -15 234 0 0 0 chr9 121527669 121527695 -20743749 + (A)n Simple_repeat Simple_repeat 1 26 0 304 240 125 0 chr9 121529307 121529403 -20742041 - LTR33A LTR ERVL -10 513 406 474 330 30 46 chr9 121529810 121530055 -20741389 - MIR SINE MIR -1 261 22 249 33 0 0 chr9 121530361 121530391 -20741053 + (GA)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr9 121530499 121530524 -20740920 + AT_rich Low_complexity Low_complexity 1 25 0 2142 179 59 7 chr9 121530660 121531067 -20740377 + MSTA LTR MaLR 1 428 0 8290 172 31 19 chr9 121531067 121532692 -20738752 + MSTA-int LTR MaLR 1 1646 -5 1928 202 67 0 chr9 121532698 121533099 -20738345 + MSTA LTR MaLR 1 428 0 262 247 53 74 chr9 121534126 121534297 -20737147 - MIR SINE MIR -62 146 21 347 167 0 0 chr9 121534703 121534763 -20736681 - AluJ/FLAM SINE Alu -233 69 10 482 300 59 42 chr9 121535838 121536075 -20735369 - MIR SINE MIR 0 262 22 232 299 9 19 chr9 121536742 121536849 -20734595 + GA-rich Low_complexity Low_complexity 3 108 0 797 278 29 12 chr9 121537423 121537668 -20733776 - MIR SINE MIR -1 261 13 182 415 30 15 chr9 121537730 121537865 -20733579 - L2 LINE L2 -7 3265 3129 971 216 64 70 chr9 121537990 121538076 -20733368 - MER58B DNA MER1_type -2094 326 241 1942 143 3 37 chr9 121538076 121538425 -20733019 - MER1B DNA MER1_type 0 337 1 971 216 64 70 chr9 121538425 121538666 -20732778 - MER58B DNA MER1_type -2179 241 1 408 323 61 30 chr9 121539512 121539840 -20731604 + LTR16C LTR ERVL 151 488 -3 235 265 87 59 chr9 121540236 121540362 -20731082 - L1ME4a LINE L1 -65 6056 5935 183 100 0 0 chr9 121540362 121540392 -20731052 + (TA)n Simple_repeat Simple_repeat 1 30 0 235 265 87 59 chr9 121540392 121540469 -20730975 - L1ME4a LINE L1 -186 5935 5844 2343 108 0 0 chr9 121540469 121540775 -20730669 - AluSg1 SINE Alu -3 306 1 235 265 87 59 chr9 121540775 121540789 -20730655 - L1ME4a LINE L1 -277 5844 5832 2111 109 10 10 chr9 121541430 121541742 -20729702 - AluSq SINE Alu -1 312 1 408 338 81 9 chr9 121542033 121542255 -20729189 + MIR SINE MIR 15 252 -10 404 316 31 61 chr9 121542611 121542807 -20728637 + L1 LINE L1 4781 4970 -1176 1109 285 30 66 chr9 121543089 121543650 -20727794 + L1M2a LINE L1 3 543 -6625 359 315 22 60 chr9 121543785 121544017 -20727427 + L1M2a LINE L1 1322 1544 -5624 1683 222 39 59 chr9 121544057 121544343 -20727101 + L1M2a LINE L1 1842 2132 -4966 2412 68 3 0 chr9 121544343 121544637 -20726807 + AluY SINE Alu 1 295 -16 1683 222 39 59 chr9 121544637 121544984 -20726460 + L1M2a LINE L1 2132 2471 -4627 773 234 82 3 chr9 121544980 121545283 -20726161 + L1M2a LINE L1 3871 4197 -2970 * 9008 179 224 1 chr9 121545283 121547270 -20724174 + L1M2 LINE L1 21 2450 -5115 4546 203 43 14 chr9 121547265 121548756 -20722688 + L1M2 LINE L1 5653 7199 -511 * 207 0 0 0 chr9 121548757 121548780 -20722664 + (TC)n Simple_repeat Simple_repeat 1 23 0 204 40 0 0 chr9 121548783 121548808 -20722636 + (TA)n Simple_repeat Simple_repeat 1 25 0 1743 275 72 38 chr9 121548814 121549778 -20721666 - L1M4 LINE L1 -1207 5357 4362 2161 256 116 48 chr9 121549781 121550550 -20720894 - L1MCa LINE L1 -3490 3074 2359 2219 118 0 0 chr9 121550550 121550839 -20720605 - AluSx SINE Alu -17 295 7 2161 256 116 48 chr9 121550839 121551870 -20719574 - L1MCa LINE L1 -4205 2359 1132 941 238 120 46 chr9 121551870 121552236 -20719208 - MSTD LTR MaLR 0 396 4 6307 230 62 30 chr9 121552247 121553921 -20717523 - MSTD-int LTR MaLR -5 1730 3 703 244 24 98 chr9 121553927 121554296 -20717148 - MLT1A1 LTR MaLR -5 360 19 1000 239 29 68 chr9 121554310 121554395 -20717049 - L1MCa LINE L1 -4910 1135 1048 2143 123 3 13 chr9 121554395 121554703 -20716741 - AluY SINE Alu -6 305 1 1000 239 29 68 chr9 121554703 121555099 -20716345 - L1MCa LINE L1 -4997 1048 673 527 311 114 19 chr9 121555111 121555426 -20716018 - L1MCa LINE L1 -5622 423 79 224 306 36 45 chr9 121556566 121556677 -20714767 + MIR SINE MIR 33 142 -66 249 358 137 42 chr9 121556740 121556930 -20714514 + L3 LINE CR1 918 1125 -452 254 324 0 0 chr9 121557041 121557109 -20714335 - MIR SINE MIR -19 243 176 234 156 0 0 chr9 121557128 121557173 -20714271 + (TG)n Simple_repeat Simple_repeat 2 46 0 437 305 115 25 chr9 121557457 121557657 -20713787 + L3 LINE CR1 1357 1574 -3 472 298 88 9 chr9 121557799 121558027 -20713417 - MIR SINE MIR -13 249 4 335 323 58 19 chr9 121558125 121558280 -20713164 - MIR SINE MIR -44 218 58 231 123 0 53 chr9 121558969 121559026 -20712418 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 319 302 0 50 chr9 121559504 121559663 -20711781 - MER113 DNA MER1_type? -49 472 322 1047 165 49 79 chr9 121559681 121559947 -20711497 - AluJo SINE Alu -28 284 27 284 231 13 13 chr9 121559967 121560045 -20711399 - MER113 DNA MER1_type? -213 308 231 2891 219 16 11 chr9 121560053 121560698 -20710746 - MER82 DNA MER2_type 0 653 6 315 224 83 73 chr9 121560701 121560893 -20710551 - MER113 DNA MER1_type? -326 195 2 2062 135 0 0 chr9 121561046 121561342 -20710102 + AluSx SINE Alu 1 296 -16 299 294 22 0 chr9 121561950 121562042 -20709402 - MIR3 SINE MIR -6 202 109 328 221 229 0 chr9 121562309 121562431 -20709013 + LTR16A LTR ERVL 301 450 0 280 376 105 37 chr9 121562599 121562716 -20708728 + L2 LINE L2 2571 2679 -635 2466 65 3 0 chr9 121562716 121563026 -20708418 + AluY SINE Alu 1 311 0 280 376 105 37 chr9 121563026 121563083 -20708361 + L2 LINE L2 2679 2731 -583 2254 98 0 7 chr9 121563083 121563378 -20708066 + AluSx SINE Alu 5 297 -15 280 376 105 37 chr9 121563378 121563544 -20707900 + L2 LINE L2 2731 2943 -371 1503 309 74 62 chr9 121563544 121564137 -20707307 - MER4A LTR ERV1 0 600 1 280 376 105 37 chr9 121564137 121564174 -20707270 + L2 LINE L2 2943 2976 -338 506 288 38 6 chr9 121564236 121564396 -20707048 + MER91B DNA MER1_type 1 165 -25 286 308 28 62 chr9 121564459 121564670 -20706774 + L2 LINE L2 3109 3312 -1 314 272 37 15 chr9 121565557 121565693 -20705751 - LTR67 LTR ERVL -1 556 418 207 284 45 45 chr9 121566263 121566330 -20705114 - L2 LINE L2 -2 3311 3245 1028 183 114 81 chr9 121566362 121566695 -20704749 - MER2 DNA MER2_type 0 344 1 215 386 93 0 chr9 121566889 121567029 -20704415 + MIR SINE MIR 13 165 -97 225 94 0 0 chr9 121568637 121568669 -20702775 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1688 301 205 30 chr9 121568669 121569963 -20701481 - L2 LINE L2 -3 3310 1792 376 333 47 6 chr9 121570088 121570259 -20701185 + MLT1I LTR MaLR 84 261 -148 1697 175 0 0 chr9 121570299 121570562 -20700882 + AluJo SINE Alu 6 268 -44 483 276 0 0 chr9 121570671 121570787 -20700657 + AluJb SINE Alu 177 292 -20 304 231 13 13 chr9 121570807 121570885 -20700559 + MLT1I LTR MaLR 318 395 -14 308 139 23 23 chr9 121571286 121571372 -20700072 + (TTA)n Simple_repeat Simple_repeat 3 88 0 185 264 56 14 chr9 121571969 121572041 -20699403 + L2 LINE L2 2439 2513 -801 25 31 0 0 chr9 121572172 121572204 -20699240 + AT_rich Low_complexity Low_complexity 1 32 0 713 240 55 65 chr9 121572822 121573114 -20698330 - MLT1C LTR MaLR 0 467 179 272 297 22 11 chr9 121573186 121573277 -20698167 - L2 LINE L2 -1044 2270 2179 693 187 57 62 chr9 121573282 121573491 -20697953 - MLT1C LTR MaLR -258 209 2 2007 178 33 32 chr9 121574122 121574670 -20696774 + MLT2A2 LTR ERVL 3 554 0 1643 187 75 0 chr9 121574682 121575030 -20696414 - MLT1E1 LTR MaLR -1 653 280 1066 135 36 0 chr9 121575060 121575252 -20696192 - L1MA3 LINE L1 -9 6296 6098 469 54 54 0 chr9 121575260 121575334 -20696110 + L1MA3 LINE L1 6098 6175 -130 1084 243 11 8 chr9 121575335 121575598 -20695846 - MLT1E1 LTR MaLR -390 264 1 207 288 50 12 chr9 121577106 121577186 -20694258 + L3 LINE CR1 637 719 -858 193 366 54 27 chr9 121577957 121578069 -20693375 - L2 LINE L2 -8 3305 3191 588 354 124 41 chr9 121578150 121579099 -20692345 - L2 LINE L2 0 3272 2250 295 327 86 6 chr9 121580994 121581156 -20690288 - MIR3 SINE MIR -18 190 16 365 271 0 0 chr9 121581981 121582088 -20689356 - MER103 DNA DNA -48 118 12 338 283 11 11 chr9 121582190 121582282 -20689162 - MIR3 SINE MIR -53 155 64 197 314 0 14 chr9 121582387 121582457 -20688987 + MIR SINE MIR 184 252 -10 1831 136 0 14 chr9 121582995 121583275 -20688169 - AluSc SINE Alu -6 303 28 2294 105 7 3 chr9 121584000 121584305 -20687139 - AluSq SINE Alu -7 306 1 713 213 7 0 chr9 121584346 121584487 -20686957 - MER5A DNA MER1_type -44 145 4 454 313 148 13 chr9 121584556 121584866 -20686578 - LTR16C LTR ERVL -14 477 126 320 238 16 0 chr9 121584906 121584969 -20686475 + MER5A DNA MER1_type 40 103 -86 23 0 0 0 chr9 121585084 121585107 -20686337 + AT_rich Low_complexity Low_complexity 1 23 0 384 275 42 14 chr9 121585762 121585904 -20685540 + L2 LINE L2 2593 2738 -576 320 293 27 0 chr9 121586251 121586326 -20685118 + L2 LINE L2 3190 3266 -6 399 282 130 8 chr9 121586500 121586631 -20684813 + MIR3 SINE MIR 56 202 -6 1101 323 80 59 chr9 121586660 121587560 -20683884 + L3 LINE CR1 332 1250 -327 204 343 203 7 chr9 121587632 121587775 -20683669 + L2 LINE L2 3102 3272 0 213 240 0 0 chr9 121588672 121588722 -20682722 + A-rich Low_complexity Low_complexity 1 50 0 461 299 22 7 chr9 121589365 121589502 -20681942 - MIR SINE MIR -104 158 20 278 263 59 72 chr9 121589581 121589733 -20681711 - MIR SINE MIR -93 169 20 192 265 72 24 chr9 121589804 121589887 -20681557 + MER5B DNA MER1_type 46 132 -46 865 167 42 18 chr9 121589898 121590066 -20681378 - AluSg/x SINE Alu -21 291 120 193 196 59 20 chr9 121590356 121590407 -20681037 + MER5B DNA MER1_type 80 132 -46 1776 164 36 0 chr9 121590418 121590699 -20680745 - AluSx SINE Alu -21 291 1 2425 104 14 0 chr9 121590777 121591133 -20680311 - L1PA14 LINE L1 -1 6160 5800 2338 100 3 0 chr9 121591746 121592055 -20679389 - AluSg SINE Alu 0 310 1 193 300 33 0 chr9 121592354 121592414 -20679030 - L3 LINE CR1 -8 1569 1508 322 287 54 8 chr9 121592513 121592642 -20678802 - MIR3 SINE MIR -65 143 9 575 248 225 28 chr9 121593392 121593610 -20677834 - MIR SINE MIR -1 261 1 918 123 0 0 chr9 121593701 121593823 -20677621 + AluSp/q SINE Alu 159 280 -33 219 345 42 25 chr9 121594020 121594139 -20677305 + MIR SINE MIR 53 173 -89 232 275 88 22 chr9 121594461 121594552 -20676892 - MIR SINE MIR -65 143 47 255 103 0 0 chr9 121595103 121595142 -20676302 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 239 298 138 9 chr9 121595704 121595922 -20675522 + L1MC/D LINE L1 2023 2268 -4128 525 302 98 32 chr9 121595968 121596316 -20675128 + L1MC/D LINE L1 2273 2643 -3572 314 242 104 35 chr9 121596558 121596818 -20674626 + L1MC/D LINE L1 2902 3179 -3036 210 118 0 0 chr9 121596842 121596876 -20674568 + (TG)n Simple_repeat Simple_repeat 2 35 0 182 118 29 0 chr9 121596877 121596911 -20674533 + GA-rich Low_complexity Low_complexity 2 36 0 22 35 0 0 chr9 121596954 121596983 -20674461 + AT_rich Low_complexity Low_complexity 1 29 0 428 324 93 32 chr9 121597066 121597625 -20673819 + L1MC/D LINE L1 3499 4091 -2124 575 266 40 46 chr9 121597884 121598230 -20673214 + L1MC/D LINE L1 5129 5472 -743 6605 152 23 41 chr9 121598238 121598996 -20672448 + L1PA16 LINE L1 1802 2524 -4325 1959 117 36 0 chr9 121598996 121599277 -20672167 - AluSx SINE Alu -19 293 3 6605 152 23 41 chr9 121599277 121600009 -20671435 + L1PA16 LINE L1 2524 3268 -3581 1152 251 33 17 chr9 121600008 121600427 -20671017 + L1 LINE L1 2909 3334 -2812 * 6379 195 25 11 chr9 121600423 121602825 -20668619 + L1PA16 LINE L1 4444 6869 0 344 344 6 7 chr9 121602842 121603018 -20668426 + L1MC/D LINE L1 5503 5678 -565 27 49 0 0 chr9 121603495 121603536 -20667908 + AT_rich Low_complexity Low_complexity 1 41 0 313 328 108 15 chr9 121603906 121604174 -20667270 + L1MC/D LINE L1 5530 5822 -1986 4419 113 16 26 chr9 121604251 121604982 -20666462 - pTR5 LTR ERV1 0 2438 1715 7419 28 8 0 chr9 121605082 121606020 -20665424 + L1PA3 LINE L1 5211 6155 0 673 166 43 36 chr9 121606022 121606161 -20665283 - L1M1 LINE L1 -7407 158 19 4132 169 26 7 chr9 121606166 121606981 -20664463 - L1 LINE L1 -1400 4746 3917 289 304 0 36 chr9 121606981 121607093 -20664351 + MIR SINE MIR 106 213 -49 11073 191 35 39 chr9 121607254 121608754 -20662690 - MER21-int LTR ERV1 -576 3615 2123 1527 108 31 0 chr9 121608754 121608977 -20662467 + MER30 DNA MER1_type 1 230 0 11073 191 35 39 chr9 121608977 121609789 -20661655 - MER21-int LTR ERV1 -2068 2123 1310 1045 168 29 14 chr9 121609898 121610107 -20661337 + AluSg/x SINE Alu 84 295 -15 361 195 8 51 chr9 121610107 121610225 -20661219 - MER21-int LTR ERV1 -2866 1325 1213 3227 129 76 19 chr9 121610239 121610818 -20660626 - LTR9 LTR ERV1 0 612 1 6436 145 7 49 chr9 121610818 121611023 -20660421 - MER21-int LTR ERV1 -2539 4219 4007 2406 64 0 0 chr9 121611023 121611320 -20660124 - AluY SINE Alu -14 297 1 6436 145 7 49 chr9 121611320 121612299 -20659145 - MER21-int LTR ERV1 -2751 4007 3085 1287 169 51 4 chr9 121612369 121612605 -20658839 - MER21A LTR ERV1 -6 925 679 1228 210 23 16 chr9 121612593 121612850 -20658594 + MLT1A1 LTR MaLR 107 365 0 * 2186 123 3 0 chr9 121612882 121613190 -20658254 + AluSp SINE Alu 1 309 -4 722 22 0 0 chr9 121613607 121613697 -20657747 + AluYa5/8 SINE Alu 219 308 -2 1028 219 63 0 chr9 121615060 121615361 -20656083 - MER114 LTR ERV -285 363 44 21 0 0 0 chr9 121615748 121615769 -20655675 + AT_rich Low_complexity Low_complexity 1 21 0 5650 197 47 32 chr9 121615776 121618040 -20653404 - L1MC1 LINE L1 0 6333 4036 372 319 242 3 chr9 121618063 121618175 -20653269 - L2 LINE L2 -383 2931 2847 222 37 0 0 chr9 121618175 121618202 -20653242 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 279 0 0 0 chr9 121618201 121618232 -20653212 + (CA)n Simple_repeat Simple_repeat 2 32 0 372 319 242 3 chr9 121618202 121618454 -20652990 - L2 LINE L2 -467 2847 2517 1768 186 21 9 chr9 121618466 121618800 -20652644 + L1MA4 LINE L1 5683 6020 -280 345 153 59 12 chr9 121618803 121618888 -20652556 + L1MB4 LINE L1 6086 6174 -6 288 297 27 9 chr9 121618917 121619028 -20652416 - L2 LINE L2 -784 2530 2418 188 315 41 0 chr9 121619014 121619087 -20652357 + MIR SINE MIR 137 212 -50 * 356 339 78 11 chr9 121619336 121619516 -20651928 - MIR SINE MIR -19 243 52 401 400 35 49 chr9 121619692 121620059 -20651385 + L2 LINE L2 2910 3271 -1 270 95 0 0 chr9 121620874 121620916 -20650528 + (CA)n Simple_repeat Simple_repeat 1 42 0 430 308 90 19 chr9 121621330 121621541 -20649903 - MIR SINE MIR -11 251 26 417 266 66 39 chr9 121621667 121621926 -20649518 - L1ME4a LINE L1 -55 6066 5801 296 387 8 0 chr9 121621930 121622049 -20649395 - L3 LINE CR1 -5 1572 1453 188 315 56 37 chr9 121622181 121622289 -20649155 - L3 LINE CR1 -357 1220 1111 183 329 123 24 chr9 121622417 121622587 -20648857 + L3b LINE CR1 1390 1576 -7 21 0 0 0 chr9 121623612 121623633 -20647811 + AT_rich Low_complexity Low_complexity 1 21 0 251 296 31 10 chr9 121623839 121623937 -20647507 + MER103 DNA DNA 59 158 -8 3793 208 91 65 chr9 121624045 121625419 -20646025 + L1M4c LINE L1 1153 2565 -3817 317 157 0 0 chr9 121625419 121625470 -20645974 + ERVL LTR ERVL 5230 5280 -484 3201 198 53 11 chr9 121625482 121626109 -20645335 + ERVL LTR ERVL 3161 3813 -1951 * 6801 195 41 15 chr9 121626108 121626896 -20644548 + ERVL LTR ERVL 4000 4841 -923 1877 85 4 4 chr9 121626896 121627143 -20644301 - AluSc SINE Alu -21 288 42 6801 195 41 15 chr9 121627143 121627727 -20643717 + ERVL LTR ERVL 4841 5408 -356 416 182 13 0 chr9 121627757 121627834 -20643610 - ERVL LTR ERVL -343 5421 5344 24 53 0 0 chr9 121628407 121628445 -20642999 + AT_rich Low_complexity Low_complexity 1 38 0 1596 119 27 20 chr9 121628661 121628954 -20642490 - L1MA7 LINE L1 0 6291 5997 444 301 45 13 chr9 121629056 121629212 -20642232 - MIR SINE MIR -56 206 46 2505 105 5 24 chr9 121629931 121630302 -20641142 + THE1B LTR MaLR 1 364 0 200 138 0 0 chr9 121630666 121630695 -20640749 - MIR SINE MIR -93 115 87 417 330 68 17 chr9 121631316 121631492 -20639952 + MIR3 SINE MIR 18 202 -6 502 311 162 0 chr9 121631967 121632189 -20639255 + MIR SINE MIR 4 261 -1 304 158 105 0 chr9 121632225 121632301 -20639143 - MIR SINE MIR -56 206 123 2022 169 71 12 chr9 121632764 121633184 -20638260 + MER65A LTR ERV1 1 445 0 276 354 82 48 chr9 121633250 121633456 -20637988 + MIR SINE MIR 1 213 -49 335 190 51 0 chr9 121634098 121634177 -20637267 + MER3 DNA MER1_type 127 209 0 294 228 62 19 chr9 121634247 121634409 -20637035 + (TA)n Simple_repeat Simple_repeat 2 170 0 461 280 13 25 chr9 121634578 121634735 -20636709 - MER117 DNA MER1_type -42 155 1 500 226 0 9 chr9 121635389 121635495 -20635949 - LTR16A LTR ERVL -2 448 344 914 90 15 15 chr9 121635495 121635628 -20635816 - L1P3 LINE L1 -434 5720 5588 1851 216 36 50 chr9 121635656 121636161 -20635283 - MLT1D LTR MaLR -7 498 1 1909 261 62 31 chr9 121636161 121637278 -20634166 - L1ME3 LINE L1 -175 5987 4832 286 247 108 0 chr9 121637690 121637783 -20633661 - MIR SINE MIR -89 173 71 2304 99 3 0 chr9 121637840 121638143 -20633301 - AluSg SINE Alu -6 304 1 341 316 53 0 chr9 121638217 121638350 -20633094 + MIR SINE MIR 56 195 -67 270 336 14 43 chr9 121638534 121638674 -20632770 - L3 LINE CR1 -301 1276 1141 214 320 107 8 chr9 121638951 121639073 -20632371 - MIR SINE MIR -27 235 102 1933 89 0 4 chr9 121639147 121639418 -20632026 - L1PB1 LINE L1 -2 6149 5880 2142 121 0 3 chr9 121640454 121640760 -20630684 + AluSg SINE Alu 1 305 -5 315 191 0 0 chr9 121640767 121640835 -20630609 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 228 125 0 0 chr9 121640790 121640838 -20630606 + LTR66 LTR ERVL 394 441 -169 * 21 36 0 0 chr9 121641009 121641037 -20630407 + AT_rich Low_complexity Low_complexity 1 28 0 300 20 122 0 chr9 121641131 121641180 -20630264 + L1PA13 LINE L1 6108 6162 -1 21 71 0 0 chr9 121641503 121641545 -20629899 + AT_rich Low_complexity Low_complexity 1 42 0 2294 175 37 70 chr9 121641748 121642319 -20629125 + MER34B LTR ERV1 11 562 -3 326 238 293 14 chr9 121642672 121642819 -20628625 - MER58A DNA MER1_type 0 224 37 236 380 66 12 chr9 121643227 121643393 -20628051 + MIR SINE MIR 24 198 -64 * 246 341 39 8 chr9 121643382 121643511 -20627933 + L3 LINE CR1 1357 1489 -88 1292 292 76 64 chr9 121643618 121644338 -20627106 + L1MEc LINE L1 27 737 -5659 3179 180 5 21 chr9 121644338 121644965 -20626479 + L1MC1 LINE L1 5716 6332 -1 1292 292 76 64 chr9 121644965 121645051 -20626393 + L1MEc LINE L1 737 821 -5575 2611 149 42 20 chr9 121645051 121645508 -20625936 - LTR24 LTR ERV1 0 467 1 1292 292 76 64 chr9 121645508 121645836 -20625608 + L1MEc LINE L1 821 1144 -5252 1109 229 35 41 chr9 121645836 121646202 -20625242 - MLT1A1 LTR MaLR 0 365 2 1292 292 76 64 chr9 121646202 121646526 -20624918 + L1MEc LINE L1 1144 1504 -4892 406 315 51 5 chr9 121646722 121646938 -20624506 + L1MEc LINE L1 1598 1823 -4573 239 277 0 0 chr9 121647037 121647102 -20624342 + L1ME LINE L1 236 300 -5905 * 779 276 144 31 chr9 121647096 121647644 -20623800 + L1ME LINE L1 1441 2050 -4346 603 186 60 36 chr9 121647743 121647910 -20623534 + L1MB3 LINE L1 5969 6139 -44 1368 279 125 6 chr9 121648022 121648935 -20622509 + L1ME LINE L1 2288 3309 -2906 27 45 0 45 chr9 121648998 121649065 -20622379 + AT_rich Low_complexity Low_complexity 1 64 0 395 311 104 20 chr9 121649080 121649379 -20622065 + L1ME LINE L1 3589 3912 -2303 2582 181 37 6 chr9 121649397 121649884 -20621560 + L1PA10 LINE L1 2 503 -5372 24156 153 11 28 chr9 121649889 121654542 -20616902 + L1PA10 LINE L1 771 5375 -1086 1408 177 4 11 chr9 121654770 121655035 -20616409 + L1PA10 LINE L1 6221 6483 0 627 301 58 43 chr9 121655045 121655513 -20615931 + L1ME LINE L1 3915 4389 -1826 2153 110 25 0 chr9 121655517 121655844 -20615600 - L1PA13 LINE L1 -4 6159 5825 1267 177 73 5 chr9 121655844 121656186 -20615258 - L1PA13 LINE L1 -734 5434 5064 3336 170 49 2 chr9 121656200 121656499 -20614945 + L1P LINE L1 4379 4662 -1484 221 0 35 0 chr9 121656499 121656528 -20614916 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3336 170 49 2 chr9 121656528 121656862 -20614582 + L1P LINE L1 4662 5042 -1104 2199 91 0 7 chr9 121656864 121657150 -20614294 - AluSc SINE Alu -10 299 16 297 284 77 14 chr9 121657156 121657378 -20614066 + L1ME LINE L1 4396 4631 -1584 1385 255 99 40 chr9 121657387 121658069 -20613375 + L1ME2 LINE L1 4457 5199 -955 2668 122 24 0 chr9 121658069 121658488 -20612956 - L1PA13 LINE L1 -4 6159 5731 1385 255 99 40 chr9 121658488 121658635 -20612809 + L1ME2 LINE L1 5199 5336 -818 2033 262 61 16 chr9 121658671 121659373 -20612071 + L1ME2 LINE L1 5431 6164 0 226 232 56 42 chr9 121659635 121659777 -20611667 + L1MC5 LINE L1 7614 7757 -204 1316 217 50 11 chr9 121659934 121660215 -20611229 + AluJb SINE Alu 1 292 -10 234 250 0 0 chr9 121660775 121660843 -20610601 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 216 382 73 8 chr9 121661704 121661827 -20609617 + MIR SINE MIR 2 132 -130 1488 189 30 9 chr9 121661902 121662235 -20609209 - L1PB4 LINE L1 -10 6146 5807 1928 137 48 59 chr9 121662437 121662795 -20608649 - THE1B LTR MaLR -1 363 10 266 250 40 70 chr9 121662799 121662899 -20608545 + MIR SINE MIR 129 225 -37 249 287 43 21 chr9 121663288 121663382 -20608062 - MIR SINE MIR -110 152 57 1168 78 30 0 chr9 121664242 121664409 -20607035 - L1PA13 LINE L1 -3 6160 5989 2211 97 12 9 chr9 121664416 121664745 -20606699 + L1PA13 LINE L1 5616 5945 -218 387 271 23 8 chr9 121665301 121665430 -20606014 - L1ME4a LINE L1 -261 5860 5730 23 33 0 0 chr9 121665506 121665536 -20605908 + AT_rich Low_complexity Low_complexity 1 30 0 810 322 77 54 chr9 121665563 121666140 -20605304 + L2 LINE L2 2497 3090 -223 2092 108 10 3 chr9 121666293 121666588 -20604856 - AluSg SINE Alu -13 297 1 1218 108 46 0 chr9 121667709 121667903 -20603541 - L1MA6 LINE L1 -2 6298 6096 863 240 102 29 chr9 121667903 121667948 -20603496 - Charlie4a DNA MER1_type -1476 485 445 489 266 112 94 chr9 121667948 121668493 -20602951 + MLT1H1 LTR MaLR 1 555 0 863 240 102 29 chr9 121668493 121668897 -20602547 - Charlie4a DNA MER1_type -1516 445 3 353 242 15 106 chr9 121669272 121669309 -20602135 + MER5A DNA MER1_type 21 60 -129 2506 59 0 0 chr9 121669309 121669613 -20601831 - AluYa5 SINE Alu -7 304 1 353 242 15 106 chr9 121669613 121669707 -20601737 + MER5A DNA MER1_type 60 140 -49 418 229 57 9 chr9 121670934 121671039 -20600405 - MIR3 SINE MIR -18 190 81 268 226 49 39 chr9 121671152 121671254 -20600190 - MER103 DNA DNA -61 105 3 2402 77 3 3 chr9 121671470 121671781 -20599663 - AluY SINE Alu 0 311 1 374 331 22 34 chr9 121672011 121672189 -20599255 - MIR3 SINE MIR -13 195 20 195 283 0 0 chr9 121672301 121672400 -20599044 + CT-rich Low_complexity Low_complexity 3 101 0 2264 176 28 16 chr9 121672467 121672894 -20598550 - MSTB1 LTR MaLR 0 432 1 221 372 216 0 chr9 121673086 121673234 -20598210 - MER5A DNA MER1_type 0 189 10 202 357 56 24 chr9 121673416 121673542 -20597902 - MIR SINE MIR -55 153 24 447 19 0 0 chr9 121673565 121673617 -20597827 + (CA)n Simple_repeat Simple_repeat 2 53 0 24 53 0 0 chr9 121673844 121673882 -20597562 + AT_rich Low_complexity Low_complexity 1 38 0 1184 282 56 32 chr9 121674988 121675524 -20595920 + MLT1H LTR MaLR 1 549 0 422 400 25 8 chr9 121677443 121677688 -20593756 - MIR SINE MIR 0 262 14 207 313 69 53 chr9 121677759 121677890 -20593554 - L2 LINE L2 -4 3309 3177 320 330 11 0 chr9 121678044 121678138 -20593306 + L2 LINE L2 3177 3271 -1 276 302 56 40 chr9 121678367 121678493 -20592951 - L2 LINE L2 -556 2758 2631 216 0 0 0 chr9 121679849 121679873 -20591571 + (T)n Simple_repeat Simple_repeat 1 24 0 183 195 24 0 chr9 121680107 121680148 -20591296 - L2 LINE L2 0 3313 3272 1159 291 71 58 chr9 121680268 121680805 -20590639 + MLT1H LTR MaLR 1 544 -5 334 340 38 32 chr9 121680996 121681181 -20590263 - MLT1K LTR MaLR -103 485 300 327 135 0 0 chr9 121681309 121681361 -20590083 - MADE1 DNA Mariner -27 53 2 236 109 0 43 chr9 121682079 121682125 -20589319 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 310 331 63 0 chr9 121682127 121682254 -20589190 - L2 LINE L2 -2 3270 3136 295 299 103 0 chr9 121682431 121682538 -20588906 - MIR SINE MIR -54 208 91 204 40 0 0 chr9 121683049 121683074 -20588370 + (CA)n Simple_repeat Simple_repeat 2 26 0 218 329 12 24 chr9 121683617 121683702 -20587742 + L2 LINE L2 3209 3292 -21 1515 214 30 25 chr9 121684074 121684277 -20587167 + L1M3 LINE L1 5434 5641 -542 1547 183 73 14 chr9 121684277 121684621 -20586823 + MLT1A1 LTR MaLR 2 365 0 1515 214 30 25 chr9 121684621 121684781 -20586663 + L1M3 LINE L1 5641 5799 -384 1804 118 0 87 chr9 121684781 121685186 -20586258 + Charlie3 DNA MER1_type 1 2712 0 271 187 40 0 chr9 121685186 121685261 -20586183 + L1M3 LINE L1 5791 5868 -312 2248 169 28 15 chr9 121685836 121686233 -20585211 - MER21A LTR ERV1 -7 924 523 454 177 0 13 chr9 121686233 121686312 -20585132 + THE1C LTR MaLR 1 78 -350 729 190 84 129 chr9 121686454 121686900 -20584544 - LTR28 LTR ERV1 -10 970 1 1470 179 10 30 chr9 121686900 121687201 -20584243 + THE1C LTR MaLR 81 375 0 1181 218 24 15 chr9 121687202 121687594 -20583850 - MER21A LTR ERV1 -433 430 1 1320 194 54 25 chr9 121687594 121687872 -20583572 - MER21A-int LTR ERV1 0 4191 3906 248 379 10 0 chr9 121687975 121688078 -20583366 - MIR SINE MIR -63 145 42 218 247 101 34 chr9 121688141 121688230 -20583214 - L2 LINE L2 0 3272 3178 212 247 376 0 chr9 121688994 121689087 -20582357 - MIR SINE MIR -54 208 81 204 407 44 18 chr9 121689353 121689466 -20581978 - L2 LINE L2 -8 3264 3149 6544 50 5 0 chr9 121689554 121690370 -20581074 + L1PA7 LINE L1 5334 6153 -1 204 111 0 0 chr9 121690556 121690592 -20580852 + (T)n Simple_repeat Simple_repeat 1 36 0 2484 59 0 0 chr9 121690788 121691095 -20580349 + AluY SINE Alu 1 307 -4 216 129 79 79 chr9 121692083 121692222 -20579222 + (TTTAA)n Simple_repeat Simple_repeat 3 141 0 1468 154 26 0 chr9 121692225 121692497 -20578947 - L1MA5A LINE L1 -4 6293 6015 360 331 47 8 chr9 121692714 121692841 -20578603 - L2 LINE L2 0 3313 3182 29 0 0 0 chr9 121693416 121693445 -20577999 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 121693711 121693733 -20577711 + AT_rich Low_complexity Low_complexity 1 22 0 2160 172 23 30 chr9 121693983 121694420 -20577024 - Tigger2a DNA MER2_type 0 434 1 1822 186 28 14 chr9 121694464 121694824 -20576620 - MLT1A1 LTR MaLR 0 365 1 2382 56 3 0 chr9 121695789 121696075 -20575369 - AluY SINE Alu -24 287 1 213 320 85 50 chr9 121697899 121698099 -20573345 + L2 LINE L2 2581 2787 -527 710 235 55 25 chr9 121698499 121698737 -20572707 + L1MA9 LINE L1 6029 6273 -39 1470 198 18 65 chr9 121698823 121699162 -20572282 + MLT1A1 LTR MaLR 1 323 -42 26 30 0 0 chr9 121699236 121699269 -20572175 + AT_rich Low_complexity Low_complexity 1 33 0 337 285 56 51 chr9 121699357 121699571 -20571873 + L2 LINE L2 3083 3297 -16 2164 116 7 0 chr9 121699993 121700294 -20571150 + AluSx SINE Alu 5 307 -5 462 333 14 0 chr9 121700804 121700945 -20570499 + MIR SINE MIR 47 189 -73 458 322 0 8 chr9 121701108 121701229 -20570215 + L2 LINE L2 3194 3313 0 616 343 34 8 chr9 121701336 121701575 -20569869 + MIR SINE MIR 18 262 0 438 239 63 28 chr9 121701661 121701803 -20569641 - MIR SINE MIR -57 205 59 267 350 108 10 chr9 121702057 121702251 -20569193 - MIR SINE MIR -11 251 39 216 336 47 28 chr9 121703180 121703287 -20568157 - L2 LINE L2 0 3272 3164 266 288 137 35 chr9 121703377 121703603 -20567841 - MIR SINE MIR -6 256 8 335 323 31 8 chr9 121703630 121703757 -20567687 + MIR SINE MIR 19 148 -114 246 128 0 0 chr9 121704803 121704842 -20566602 + (GA)n Simple_repeat Simple_repeat 1 39 0 402 283 33 0 chr9 121705211 121705331 -20566113 + MER103 DNA DNA 13 136 -30 361 303 0 9 chr9 121705534 121705643 -20565801 - MLT1J2 LTR MaLR -307 143 36 387 326 30 64 chr9 121706043 121706192 -20565252 + MIR SINE MIR 6 144 -118 2279 102 0 3 chr9 121706192 121706496 -20564948 - AluSg SINE Alu -7 303 1 387 326 30 64 chr9 121706496 121706610 -20564834 + MIR SINE MIR 144 260 -2 417 297 0 17 chr9 121706633 121706751 -20564693 + MIR SINE MIR 32 147 -115 447 259 148 11 chr9 121706994 121707183 -20564261 - L3b LINE CR1 -237 1346 1132 315 0 0 0 chr9 121707292 121707327 -20564117 + (TA)n Simple_repeat Simple_repeat 2 36 0 324 333 19 9 chr9 121708255 121708363 -20563081 + MIR SINE MIR 4 112 -150 3270 150 19 16 chr9 121708368 121708444 -20563000 - L1MA4 LINE L1 -19 6281 6207 2124 134 134 8 chr9 121708444 121708824 -20562620 + MSTA LTR MaLR 1 428 0 3270 150 19 16 chr9 121708824 121709381 -20562063 - L1MA4 LINE L1 -93 6207 5646 416 53 0 0 chr9 121709381 121709438 -20562006 - L1 LINE L1 -1352 4794 4738 13093 163 28 39 chr9 121709457 121710909 -20560535 - L1MA2 LINE L1 0 7723 6257 1981 142 7 3 chr9 121710909 121711219 -20560225 + AluSx SINE Alu 1 311 -1 13093 163 28 39 chr9 121711219 121711508 -20559936 - L1MA2 LINE L1 -1466 6257 5966 240 35 0 0 chr9 121711508 121711537 -20559907 + (TTG)n Simple_repeat Simple_repeat 2 30 0 13093 163 28 39 chr9 121711537 121715115 -20556329 - L1MA2 LINE L1 -1757 5966 2466 12370 179 32 47 chr9 121715241 121717865 -20553579 - L1M1 LINE L1 -4835 2730 146 1727 20 0 0 chr9 121717863 121718063 -20553381 - L1P LINE L1 -1445 4701 4502 * 1664 48 0 0 chr9 121718064 121718274 -20553170 + L1P LINE L1 4698 4907 -1239 298 356 6 25 chr9 121718566 121718726 -20552718 + MER117 DNA MER1_type 5 161 -36 308 287 61 9 chr9 121718824 121718939 -20552505 - MIR SINE MIR -93 169 49 387 349 65 52 chr9 121719223 121719624 -20551820 + MLT1J2 LTR MaLR 32 437 -13 804 261 82 8 chr9 121719831 121719895 -20551549 - MLT1H1 LTR MaLR 0 555 497 1168 28 17 39 chr9 121719895 121720074 -20551370 + (CTATT)n Simple_repeat Simple_repeat 4 178 0 666 47 0 0 chr9 121720077 121720163 -20551281 + (CTACT)n Simple_repeat Simple_repeat 2 87 0 804 261 82 8 chr9 121720163 121720339 -20551105 - MLT1H1 LTR MaLR -59 496 293 297 292 76 53 chr9 121720378 121720549 -20550895 - MLT1H1 LTR MaLR -372 183 9 240 356 168 20 chr9 121721653 121721903 -20549541 - L3 LINE CR1 -15 1562 1276 1696 196 20 40 chr9 121722760 121723204 -20548240 + MER63B DNA MER1_type 1 435 -1 3607 176 8 12 chr9 121723457 121724101 -20547343 + MER50 LTR ERV1 1 641 -93 220 305 12 0 chr9 121774309 121774391 -20497053 + (CA)n Simple_repeat Simple_repeat 1 83 0 453 318 47 28 chr9 121774418 121774629 -20496815 - MIR SINE MIR -30 232 18 201 262 82 0 chr9 121775230 121775291 -20496153 - L3 LINE CR1 -179 1398 1333 186 318 27 55 chr9 121775521 121775631 -20495813 + MIR3 SINE MIR 77 183 -25 275 258 138 42 chr9 121776105 121776272 -20495172 + L2 LINE L2 2827 3009 -263 233 290 191 33 chr9 121776289 121776472 -20494972 + MIR SINE MIR 23 234 -28 615 203 0 85 chr9 121776594 121776715 -20494729 - MER58B DNA MER1_type -2079 341 234 2121 0 0 0 chr9 121776715 121776941 -20494503 + AluYa5 SINE Alu 86 311 0 615 203 0 85 chr9 121776941 121776972 -20494472 - MER58B DNA MER1_type -2186 234 202 1138 191 19 0 chr9 121777039 121777254 -20494190 + MER58A DNA MER1_type 2 220 -4 203 245 19 0 chr9 121777519 121777572 -20493872 - MIR SINE MIR -72 136 83 2477 135 6 0 chr9 121777917 121778279 -20493165 - THE1B LTR MaLR 0 364 1 350 364 62 35 chr9 121778808 121779179 -20492265 - L3 LINE CR1 -56 1521 1141 297 259 46 46 chr9 121779539 121779647 -20491797 - MIR SINE MIR -38 224 117 209 273 0 36 chr9 121779821 121779876 -20491568 - L3 LINE CR1 -5 1572 1520 2348 91 0 0 chr9 121780442 121780738 -20490706 - AluSx SINE Alu -14 298 3 286 270 143 8 chr9 121780753 121780879 -20490565 + MIR SINE MIR 65 207 -55 1564 180 35 69 chr9 121780947 121781324 -20490120 - MLT1A1 LTR MaLR 0 365 2 425 288 18 43 chr9 121781642 121781805 -20489639 + L2 LINE L2 3150 3308 -5 188 192 0 19 chr9 121782787 121782839 -20488605 + MIR SINE MIR 104 153 -63 280 284 142 28 chr9 121783061 121783202 -20488242 + MIR SINE MIR 41 197 -65 273 383 31 8 chr9 121784077 121784205 -20487239 + MIR SINE MIR 22 152 -56 413 289 31 16 chr9 121784357 121784485 -20486959 - MER5B DNA MER1_type -46 132 3 931 212 95 12 chr9 121784732 121784973 -20486471 - MIR SINE MIR -1 261 1 362 340 31 19 chr9 121785298 121785457 -20485987 + L3 LINE CR1 1333 1493 -84 819 291 99 42 chr9 121785502 121786477 -20484967 + L1MEc LINE L1 757 1787 -4609 2201 127 31 0 chr9 121786478 121787057 -20484387 - L1P4 LINE L1 -572 5591 5002 1816 92 0 0 chr9 121787058 121787309 -20484135 + L1PA13 LINE L1 5912 6162 -1 624 269 134 38 chr9 121787311 121787873 -20483571 + L1MEc LINE L1 1782 2415 -3981 2229 103 0 13 chr9 121787873 121788174 -20483270 + AluSg SINE Alu 1 297 -13 624 269 134 38 chr9 121788174 121788251 -20483193 + L1MEc LINE L1 2415 2483 -3913 327 248 19 0 chr9 121788258 121788363 -20483081 - L1MC4 LINE L1 -3 8039 7933 291 93 0 0 chr9 121788439 121788482 -20482962 + (CA)n Simple_repeat Simple_repeat 2 44 0 2595 239 26 7 chr9 121788494 121789211 -20482233 - L1MC4 LINE L1 -142 7900 7170 901 280 71 7 chr9 121789231 121789681 -20481763 + L1MEc LINE L1 2446 2924 -3291 1735 156 0 33 chr9 121790257 121790558 -20480886 + AluSx SINE Alu 2 292 -20 29 0 0 0 chr9 121790668 121790697 -20480747 + AT_rich Low_complexity Low_complexity 1 29 0 203 146 24 0 chr9 121790769 121790810 -20480634 + (TA)n Simple_repeat Simple_repeat 1 42 0 227 311 64 77 chr9 121792822 121793217 -20478227 - L2 LINE L2 -227 3045 2639 211 235 20 0 chr9 121793243 121793294 -20478150 + MIR3 SINE MIR 109 160 -48 529 319 104 0 chr9 121793294 121793476 -20477968 + MER58A DNA MER1_type 1 201 -23 190 282 0 0 chr9 121793696 121793735 -20477709 + L3 LINE CR1 1524 1562 -15 280 270 126 63 chr9 121793743 121793854 -20477590 - L2 LINE L2 -1 3271 3154 327 25 0 0 chr9 121793902 121793942 -20477502 + (CA)n Simple_repeat Simple_repeat 2 41 0 1867 107 65 121 chr9 121793952 121794176 -20477268 - MLT1B LTR MaLR 0 390 198 1861 107 0 19 chr9 121794176 121794438 -20477006 - AluSx SINE Alu -2 310 54 1867 107 65 121 chr9 121794438 121794626 -20476818 - MLT1B LTR MaLR -192 198 1 207 200 46 15 chr9 121794738 121794803 -20476641 - L2 LINE L2 -99 3214 3148 589 345 98 15 chr9 121795290 121795837 -20475607 + L2 LINE L2 2705 3309 -4 269 277 153 7 chr9 121796019 121796156 -20475288 - L3 LINE CR1 -411 1166 1010 409 250 23 38 chr9 121796659 121796791 -20474653 + MIR3 SINE MIR 14 143 -65 292 283 71 23 chr9 121797390 121797530 -20473914 + MIR SINE MIR 36 188 -63 378 0 0 0 chr9 121798014 121798056 -20473388 + (CA)n Simple_repeat Simple_repeat 2 43 0 555 315 118 22 chr9 121798287 121798735 -20472709 + L2 LINE L2 2475 2965 -349 652 289 123 13 chr9 121800195 121800430 -20471014 + MIR SINE MIR 2 262 0 402 300 118 21 chr9 121800901 121801138 -20470306 + MIR SINE MIR 3 262 0 201 397 9 43 chr9 121801533 121801649 -20469795 + L2 LINE L2 2983 3094 -178 246 250 108 63 chr9 121802129 121802261 -20469183 + MIR SINE MIR 44 185 -62 507 264 14 0 chr9 121802344 121802484 -20468960 + MER103 DNA DNA 6 147 -19 531 43 0 0 chr9 121802612 121802682 -20468762 + (GA)n Simple_repeat Simple_repeat 1 70 0 235 221 0 103 chr9 121802818 121802886 -20468558 - MLT1K LTR MaLR -357 231 171 2227 51 0 11 chr9 121802928 121803202 -20468242 + AluY SINE Alu 1 271 -40 23 78 0 0 chr9 121803202 121803253 -20468191 + AT_rich Low_complexity Low_complexity 1 51 0 419 132 0 0 chr9 121804753 121804821 -20466623 - MLT1A2 LTR MaLR -13 361 294 510 108 0 0 chr9 121804843 121804917 -20466527 - L1MA7 LINE L1 -155 6136 6063 1198 238 25 31 chr9 121805040 121805326 -20466118 - MLT1A2 LTR MaLR -90 284 1 284 224 140 19 chr9 121805333 121805440 -20466004 - MIR SINE MIR -115 147 28 37 0 0 0 chr9 121805458 121805495 -20465949 + AT_rich Low_complexity Low_complexity 1 37 0 432 228 87 8 chr9 121805806 121805933 -20465511 - MIR SINE MIR -122 140 4 211 296 25 37 chr9 121806720 121806774 -20464670 + MIR SINE MIR 81 135 -127 1261 131 32 0 chr9 121806774 121806995 -20464449 - L1MA7 LINE L1 -1 6290 6063 211 296 25 37 chr9 121806995 121807021 -20464423 + MIR SINE MIR 135 160 -102 1542 213 20 17 chr9 121807693 121808041 -20463403 + MLT1A1 LTR MaLR 6 354 -11 23 68 0 0 chr9 121808157 121808201 -20463243 + AT_rich Low_complexity Low_complexity 1 44 0 1861 244 35 75 chr9 121808216 121808865 -20462579 + L1ME2 LINE L1 5533 6155 -9 8152 33 0 16 chr9 121809189 121810971 -20460473 - L1PA4 LINE L1 -3 6152 4387 351 96 0 0 chr9 121811020 121811072 -20460372 + (TG)n Simple_repeat Simple_repeat 1 52 0 239 219 52 42 chr9 121811072 121811168 -20460276 + L1MC4 LINE L1 6615 6711 -1331 212 152 43 0 chr9 121811170 121811216 -20460228 + (TATG)n Simple_repeat Simple_repeat 2 49 0 398 276 125 16 chr9 121811396 121811588 -20459856 - MIR SINE MIR -1 261 49 1087 284 88 69 chr9 121811980 121812558 -20458886 - MER45C DNA AcHobo -361 592 4 643 283 146 5 chr9 121812583 121812795 -20458649 + MIR SINE MIR 18 259 -3 719 272 39 27 chr9 121813110 121813441 -20458003 - L1ME4a LINE L1 -237 5884 5550 479 248 0 17 chr9 121813529 121813646 -20457798 - MIR SINE MIR -108 154 40 245 215 11 65 chr9 121813870 121813963 -20457481 + CT-rich Low_complexity Low_complexity 4 91 0 22 35 0 0 chr9 121814166 121814195 -20457249 + AT_rich Low_complexity Low_complexity 1 29 0 1958 44 52 0 chr9 121814447 121814722 -20456722 + AluY SINE Alu 32 319 0 563 255 77 39 chr9 121816135 121816343 -20455101 - MIR SINE MIR -3 259 44 25 31 0 0 chr9 121816579 121816611 -20454833 + AT_rich Low_complexity Low_complexity 1 32 0 216 286 0 16 chr9 121816651 121816714 -20454730 + GA-rich Low_complexity Low_complexity 3 64 0 2153 113 3 7 chr9 121817060 121817369 -20454075 + AluSq SINE Alu 1 308 -5 195 404 18 0 chr9 121818103 121818217 -20453227 + MIR3 SINE MIR 87 202 -6 374 306 120 11 chr9 121818976 121819159 -20452285 + MIR SINE MIR 16 218 -44 306 210 16 0 chr9 121819506 121819568 -20451876 + MLT1A1 LTR MaLR 29 91 -274 240 352 132 0 chr9 121819804 121819895 -20451549 + L2 LINE L2 3141 3243 -29 279 152 50 119 chr9 121821206 121821319 -20450125 - MLT1J LTR MaLR 0 549 321 556 254 8 8 chr9 121821849 121821979 -20449465 + MIR3 SINE MIR 78 207 -1 844 251 74 9 chr9 121821994 121822209 -20449235 + MIR SINE MIR 1 229 -33 282 206 29 29 chr9 121822283 121822385 -20449059 + (TA)n Simple_repeat Simple_repeat 1 102 0 616 306 5 16 chr9 121822487 121822673 -20448771 - MLT1J LTR MaLR -327 184 1 208 284 111 49 chr9 121822690 121822771 -20448673 - L2 LINE L2 -69 3203 3118 25 31 0 0 chr9 121824374 121824406 -20447038 + AT_rich Low_complexity Low_complexity 1 32 0 260 317 0 10 chr9 121824666 121824770 -20446674 - MIR SINE MIR -64 144 42 538 250 8 0 chr9 121825288 121825408 -20446036 + L1ME LINE L1 5562 5682 -439 3941 135 9 5 chr9 121825432 121826062 -20445382 - MER41B LTR ERV1 -1 634 2 26 0 0 27 chr9 121826071 121826094 -20445350 + AT_rich Low_complexity Low_complexity 1 24 -12 1865 119 4 0 chr9 121826094 121826354 -20445090 + AluSx SINE Alu 35 295 -17 26 0 0 27 chr9 121826354 121826367 -20445077 + AT_rich Low_complexity Low_complexity 24 36 0 472 279 0 8 chr9 121826572 121826694 -20444750 - L2 LINE L2 0 3313 3193 2150 148 31 14 chr9 121826832 121827190 -20444254 - THE1B LTR MaLR 0 364 1 518 298 38 6 chr9 121827595 121827753 -20443691 + MIR SINE MIR 89 251 -11 336 291 146 6 chr9 121828357 121828522 -20442922 + MIR SINE MIR 74 261 -1 21 57 0 0 chr9 121828690 121828725 -20442719 + AT_rich Low_complexity Low_complexity 1 35 0 1891 117 40 7 chr9 121829170 121829473 -20441971 + AluSx SINE Alu 1 312 0 206 105 26 0 chr9 121829665 121829703 -20441741 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 268 330 78 0 chr9 121829768 121829883 -20441561 + MLT1J LTR MaLR 1 124 -387 889 186 0 58 chr9 121829961 121830149 -20441295 - MER58A DNA MER1_type -6 218 42 5999 214 119 92 chr9 121830151 121831526 -20439918 + L1MDa LINE L1 73 1409 -5131 597 226 95 29 chr9 121831526 121831663 -20439781 + FAM SINE Alu 16 161 -24 5999 214 119 92 chr9 121831663 121832878 -20438566 + L1MDa LINE L1 1409 2874 -3666 354 274 27 20 chr9 121832866 121833012 -20438432 + L1MDa LINE L1 3150 3296 -3244 * 5921 111 16 26 chr9 121833015 121834154 -20437290 - L1PA14 LINE L1 -1 6160 5031 32527 36 4 6 chr9 121834154 121838924 -20432520 - L1PA4 LINE L1 -6 6149 1392 1908 202 5 0 chr9 121838918 121839295 -20432149 - L1PA14 LINE L1 -1101 5045 4667 * 754 279 52 49 chr9 121839314 121839811 -20431633 + L1MDa LINE L1 3309 3957 -2583 2191 122 3 0 chr9 121839811 121840107 -20431337 - AluSx SINE Alu -14 298 2 754 279 52 49 chr9 121840107 121840400 -20431044 + L1MDa LINE L1 3957 4248 -2292 329 209 0 15 chr9 121840508 121840575 -20430869 + L1MDa LINE L1 4183 4248 -2292 1654 251 48 58 chr9 121840706 121841327 -20430117 + MER21B LTR ERV1 100 714 -149 552 258 33 14 chr9 121841387 121841600 -20429844 + L1MDa LINE L1 4247 4463 -2077 366 299 51 8 chr9 121841622 121841739 -20429705 - MER21B LTR ERV1 -553 310 189 1734 242 128 27 chr9 121841739 121842451 -20428993 + L1MDa LINE L1 4476 5259 -1281 373 131 0 0 chr9 121842454 121842515 -20428929 + MLT1D LTR MaLR 445 505 0 250 224 35 0 chr9 121842518 121842576 -20428868 + Charlie1 DNA MER1_type 2701 2760 -1 194 324 40 61 chr9 121842583 121842731 -20428713 + MIR SINE MIR 87 231 -31 1841 176 16 0 chr9 121842842 121843149 -20428295 + AluSq SINE Alu 1 312 -1 205 264 28 42 chr9 121843754 121843826 -20427618 - L2 LINE L2 0 3313 3243 231 325 133 17 chr9 121844155 121844275 -20427169 + L2 LINE L2 3136 3269 -3 877 192 55 82 chr9 121844323 121844651 -20426793 + MER33 DNA MER1_type 2 320 -4 239 243 143 0 chr9 121845497 121845567 -20425877 - MER5A DNA MER1_type -83 106 27 278 328 35 58 chr9 121846161 121846335 -20425109 - MIR SINE MIR -87 175 6 2050 135 3 0 chr9 121846525 121846822 -20424622 - AluSq SINE Alu -15 298 1 251 140 20 0 chr9 121847468 121847518 -20423926 + (TG)n Simple_repeat Simple_repeat 2 52 0 303 220 0 0 chr9 121848679 121848738 -20422706 - MIR SINE MIR -127 135 77 1380 157 31 0 chr9 121849723 121849946 -20421498 - MER30 DNA MER1_type 0 230 1 410 364 17 23 chr9 121850016 121850192 -20421252 + MIR3 SINE MIR 16 190 -18 595 268 74 25 chr9 121850341 121850584 -20420860 + MIR SINE MIR 2 256 -6 234 191 0 0 chr9 121850586 121850628 -20420816 + (CAT)n Simple_repeat Simple_repeat 1 42 0 206 416 20 0 chr9 121850764 121850865 -20420579 - MIR SINE MIR -70 138 36 2425 64 0 29 chr9 121851065 121851376 -20420068 + AluY SINE Alu 1 302 -9 246 341 6 34 chr9 121851440 121851619 -20419825 + (CATA)n Simple_repeat Simple_repeat 3 176 0 267 331 29 58 chr9 121851855 121851893 -20419551 - MIR3 SINE MIR -8 200 162 351 271 73 28 chr9 121851893 121852070 -20419374 - MER5A DNA MER1_type -3 186 2 267 331 29 58 chr9 121852070 121852203 -20419241 - MIR3 SINE MIR -46 162 34 291 28 0 0 chr9 121852287 121852323 -20419121 + (TC)n Simple_repeat Simple_repeat 1 36 0 326 293 95 40 chr9 121852479 121852732 -20418712 - MLT1J LTR MaLR 0 511 245 221 382 91 18 chr9 121853017 121853127 -20418317 - L2 LINE L2 -5 3267 3150 473 333 81 67 chr9 121853335 121853695 -20417749 + L2 LINE L2 2883 3247 -25 246 231 44 66 chr9 121853795 121853886 -20417558 + MIR3 SINE MIR 103 191 -17 417 277 92 0 chr9 121853894 121854013 -20417431 + MIR3 SINE MIR 58 187 -21 351 297 47 31 chr9 121854808 121854936 -20416508 + MIR SINE MIR 19 148 -60 1316 223 78 101 chr9 121854951 121855136 -20416308 - MLT1H1 LTR MaLR 0 555 367 1182 77 0 22 chr9 121855136 121855319 -20416125 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1316 223 78 101 chr9 121855319 121855332 -20416112 - MLT1H1 LTR MaLR -188 367 355 2053 82 0 0 chr9 121855332 121855589 -20415855 - AluSx SINE Alu -39 273 17 1316 223 78 101 chr9 121855589 121855954 -20415490 - MLT1H1 LTR MaLR -200 355 4 253 198 25 62 chr9 121856013 121856094 -20415350 + MER103 DNA DNA 8 85 -81 892 300 175 32 chr9 121856115 121856612 -20414832 - L2 LINE L2 -27 3286 2862 1835 83 0 69 chr9 121856612 121856888 -20414556 + AluSx SINE Alu 35 291 -21 892 300 175 32 chr9 121856888 121857146 -20414298 - L2 LINE L2 -451 2862 2420 2103 169 73 40 chr9 121857259 121857755 -20413689 - MER67D LTR ERV1 0 514 3 299 315 127 45 chr9 121857908 121858124 -20413320 + L2 LINE L2 2920 3164 -149 312 27 0 0 chr9 121858124 121858161 -20413283 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 299 315 127 45 chr9 121858161 121858211 -20413233 + L2 LINE L2 3164 3208 -105 578 303 82 24 chr9 121858214 121858593 -20412851 + L1ME4a LINE L1 5690 6090 -31 399 291 188 19 chr9 121860356 121860569 -20410875 - MIR SINE MIR -13 249 1 913 190 17 6 chr9 121860740 121860914 -20410530 - MER5A DNA MER1_type 0 189 14 387 324 101 5 chr9 121860995 121861214 -20410230 + MIR SINE MIR 21 260 -2 24 0 0 0 chr9 121861744 121861768 -20409676 + AT_rich Low_complexity Low_complexity 1 24 0 657 298 38 21 chr9 121862239 121862477 -20408967 - MIR SINE MIR -1 261 20 182 300 100 0 chr9 121862641 121862691 -20408753 - L2 LINE L2 -8 3264 3210 214 271 0 0 chr9 121862817 121862865 -20408579 - L2 LINE L2 -224 3048 3001 207 0 0 0 chr9 121863213 121863236 -20408208 + (T)n Simple_repeat Simple_repeat 1 23 0 237 286 48 12 chr9 121863456 121863540 -20407904 - L2 LINE L2 -2 3270 3184 392 37 19 0 chr9 121863582 121863636 -20407808 + (TG)n Simple_repeat Simple_repeat 1 55 0 379 304 61 0 chr9 121863681 121863796 -20407648 - L2 LINE L2 0 3272 3151 601 293 95 41 chr9 121864647 121864985 -20406459 - MLT1I LTR MaLR -16 393 38 568 327 9 40 chr9 121865233 121865459 -20405985 + MIR SINE MIR 44 262 0 189 396 38 9 chr9 121865538 121865644 -20405800 - MIR SINE MIR -123 139 31 1759 156 48 3 chr9 121865870 121866203 -20405241 - MLT1B LTR MaLR -1 389 42 524 277 80 60 chr9 121867095 121867271 -20404173 + MIR SINE MIR 9 193 -69 2370 92 13 3 chr9 121867271 121867577 -20403867 - AluSc SINE Alu 0 309 1 524 277 80 60 chr9 121867577 121867649 -20403795 + MIR SINE MIR 193 262 0 316 335 87 8 chr9 121867782 121868024 -20403420 + MIR SINE MIR 2 262 0 2909 199 33 8 chr9 121868111 121868771 -20402673 - L1 LINE L1 -855 5291 4615 2390 182 12 12 chr9 121868776 121869275 -20402169 + L1MA9 LINE L1 5641 6139 -173 305 115 0 0 chr9 121869284 121869336 -20402108 - L1MA5A LINE L1 -2 6295 6244 * 661 170 176 0 chr9 121869332 121869491 -20401953 + L1MA9 LINE L1 6122 6308 -4 192 227 0 0 chr9 121869985 121870029 -20401415 + L2 LINE L2 3268 3311 -2 290 182 15 0 chr9 121870038 121870104 -20401340 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 4133 87 8 13 chr9 121870744 121871344 -20400100 - L1PA12 LINE L1 0 6168 5572 225 291 29 0 chr9 121871352 121871455 -20399989 + (TA)n Simple_repeat Simple_repeat 1 106 0 213 381 81 34 chr9 121871581 121871962 -20399482 + L2 LINE L2 2452 2850 -464 287 306 41 6 chr9 121872249 121872419 -20399025 - L1ME4a LINE L1 -2 6053 5878 287 303 50 25 chr9 121872699 121872818 -20398626 - L1ME4a LINE L1 -2181 5561 5440 26 50 0 0 chr9 121872948 121872988 -20398456 + AT_rich Low_complexity Low_complexity 1 40 0 217 319 172 25 chr9 121873429 121873592 -20397852 - MIR SINE MIR -73 189 3 380 245 97 13 chr9 121873734 121873889 -20397555 - L1ME3A LINE L1 -76 6094 5927 1279 262 83 43 chr9 121873917 121874959 -20396485 - L1ME4a LINE L1 -746 5334 4251 2275 166 2 42 chr9 121875032 121875257 -20396187 - Tigger2a DNA MER2_type -2274 434 234 6294 36 9 1 chr9 121875257 121876024 -20395420 + L1PA4 LINE L1 5382 6154 -1 2275 166 2 42 chr9 121876024 121876250 -20395194 - Tigger2a DNA MER2_type -2474 234 1 1744 166 0 36 chr9 121876288 121876589 -20394855 + AluJb SINE Alu 6 295 -17 23 0 0 0 chr9 121877034 121877057 -20394387 + AT_rich Low_complexity Low_complexity 1 23 0 728 269 108 48 chr9 121877185 121877914 -20393530 - L1ME4a LINE L1 -2944 3136 2364 310 259 29 92 chr9 121878036 121878210 -20393234 - L1ME4a LINE L1 -4314 1947 1785 192 40 0 0 chr9 121878210 121878235 -20393209 + (CA)n Simple_repeat Simple_repeat 2 26 0 315 315 0 0 chr9 121878242 121878331 -20393113 - L1MC4 LINE L1 -1339 6703 6615 591 290 0 0 chr9 121878369 121878685 -20392759 + (TA)n Simple_repeat Simple_repeat 1 316 0 218 189 0 19 chr9 121878697 121878750 -20392694 + (TA)n Simple_repeat Simple_repeat 1 52 0 4305 161 34 3 chr9 121878902 121879752 -20391692 + L1 LINE L1 3600 4475 -1671 973 256 103 72 chr9 121879751 121880796 -20390648 - L1ME4a LINE L1 -4579 1682 467 * 2472 76 0 0 chr9 121880797 121881099 -20390345 - AluY SINE Alu -9 302 1 258 282 8 48 chr9 121881108 121881232 -20390212 - L1ME4a LINE L1 -5468 602 484 396 347 105 40 chr9 121881569 121881949 -20389495 - L1ME4a LINE L1 -5597 473 69 2239 112 3 10 chr9 121882170 121882475 -20388969 + AluSx SINE Alu 1 303 -9 249 340 34 14 chr9 121882911 121883058 -20388386 + L2 LINE L2 3159 3308 -5 313 173 123 49 chr9 121883153 121883234 -20388210 - MIR SINE MIR -64 144 58 308 264 127 27 chr9 121883714 121883824 -20387620 + MIR SINE MIR 19 139 -69 244 344 158 42 chr9 121884246 121884433 -20387011 - L2 LINE L2 -1 3312 3148 3400 163 7 2 chr9 121884433 121885030 -20386414 + L1PA15 LINE L1 5566 6165 0 244 344 158 42 chr9 121885030 121885266 -20386178 - L2 LINE L2 -165 3148 2840 306 376 65 11 chr9 121886188 121886451 -20384993 + L2 LINE L2 2584 2860 -454 363 316 98 40 chr9 121887348 121887522 -20383922 + MIR3 SINE MIR 19 202 -6 1030 177 64 32 chr9 121887764 121887984 -20383460 + MSTB LTR MaLR 1 227 -199 7079 188 65 18 chr9 121888062 121888577 -20382867 + MSTB-int LTR MaLR 95 584 -1067 1534 197 52 0 chr9 121888577 121888867 -20382577 + AluJo SINE Alu 1 305 -7 7079 188 65 18 chr9 121888867 121889838 -20381606 + MSTB-int LTR MaLR 584 1651 0 2451 188 17 5 chr9 121889838 121890259 -20381185 + MSTB LTR MaLR 1 426 0 456 298 57 7 chr9 121890290 121890431 -20381013 + MIR SINE MIR 29 176 -86 4666 153 15 7 chr9 121890449 121891264 -20380180 + Tigger1 DNA MER2_type 1 821 -1597 1321 178 49 7 chr9 121891251 121891537 -20379907 + Tigger1 DNA MER2_type 2121 2418 0 * 23 0 0 0 chr9 121891721 121891744 -20379700 + AT_rich Low_complexity Low_complexity 1 23 0 235 345 115 0 chr9 121891788 121891923 -20379521 - MIR SINE MIR -87 121 16 2291 81 0 3 chr9 121893857 121894176 -20377268 + AluY SINE Alu 1 318 0 876 197 72 19 chr9 121894798 121895006 -20376438 - MER20 DNA MER1_type 0 219 1 2290 108 0 3 chr9 121895481 121895787 -20375657 + AluSc SINE Alu 1 305 -4 441 239 63 21 chr9 121895836 121895978 -20375466 - MIR SINE MIR -39 223 76 210 182 30 45 chr9 121895995 121896061 -20375383 + (CATATA)n Simple_repeat Simple_repeat 5 69 0 342 234 45 134 chr9 121898372 121898574 -20372870 - MIR SINE MIR -56 206 13 219 300 78 0 chr9 121899007 121899097 -20372347 + MIR3 SINE MIR 57 154 -54 26 0 0 0 chr9 121899183 121899209 -20372235 + AT_rich Low_complexity Low_complexity 1 26 0 396 229 0 0 chr9 121899324 121899433 -20372011 + CT-rich Low_complexity Low_complexity 3 111 0 183 361 42 0 chr9 121899483 121899602 -20371842 - L2 LINE L2 -18 3295 3172 239 194 269 19 chr9 121899691 121899799 -20371645 + L1MC5 LINE L1 7311 7445 -516 253 218 144 43 chr9 121900100 121900288 -20371156 + L1MC5 LINE L1 7481 7687 -274 1004 232 18 0 chr9 121900439 121900659 -20370785 + MER58A DNA MER1_type 1 224 0 261 98 16 49 chr9 121900694 121900755 -20370689 + (GGGAA)n Simple_repeat Simple_repeat 4 62 0 395 312 106 11 chr9 121900784 121900973 -20370471 + L2 LINE L2 2536 2742 -572 367 311 175 24 chr9 121901060 121901391 -20370053 + L2 LINE L2 2879 3259 -54 222 37 0 0 chr9 121901400 121901427 -20370017 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 256 304 43 11 chr9 121901612 121901704 -20369740 - L2 LINE L2 -4 3309 3215 365 280 103 34 chr9 121901758 121901933 -20369511 - MIR SINE MIR -5 257 71 284 320 158 15 chr9 121902183 121902386 -20369058 + MIR SINE MIR 13 244 -18 235 349 83 6 chr9 121902701 121902870 -20368574 - L2 LINE L2 -537 2777 2596 507 183 32 0 chr9 121902922 121903015 -20368429 - MER20 DNA MER1_type -92 127 32 777 201 63 47 chr9 121903655 121903974 -20367470 + MER33 DNA MER1_type 1 324 0 5006 43 0 0 chr9 121904192 121904841 -20366603 - L1PA3 LINE L1 -2220 3926 3278 12504 21 12 0 chr9 121904841 121907060 -20364384 + L1PA3 LINE L1 3922 6152 -3 1411 241 11 32 chr9 121907836 121908209 -20363235 + MLT1A1 LTR MaLR 1 365 0 618 298 101 28 chr9 121908304 121908660 -20362784 - MLT1J2 LTR MaLR -68 382 1 22 56 0 0 chr9 121908682 121908718 -20362726 + AT_rich Low_complexity Low_complexity 1 36 0 880 195 40 0 chr9 121908718 121908892 -20362552 - MER20 DNA MER1_type 0 219 39 454 319 38 0 chr9 121909244 121909404 -20362040 - MER117 DNA MER1_type -19 178 13 328 214 79 0 chr9 121909408 121909497 -20361947 - MIR3 SINE MIR -37 171 76 2240 105 20 0 chr9 121909746 121910050 -20361394 - AluSp SINE Alu -1 312 3 200 289 132 25 chr9 121911152 121911273 -20360171 + MIR SINE MIR 21 154 -108 306 272 79 18 chr9 121911411 121911525 -20359919 + MIR SINE MIR 110 230 -32 198 0 0 0 chr9 121911566 121911588 -20359856 + (A)n Simple_repeat Simple_repeat 1 22 0 578 169 8 0 chr9 121911589 121911707 -20359737 + (TA)n Simple_repeat Simple_repeat 2 120 0 289 91 0 0 chr9 121911911 121911955 -20359489 + U5 snRNA snRNA 1 44 -72 368 327 80 18 chr9 121912343 121912569 -20358875 - L2 LINE L2 -523 2791 2552 223 275 0 133 chr9 121912746 121912866 -20358578 - MIR SINE MIR -97 111 8 351 258 62 0 chr9 121913095 121913192 -20358252 - L2 LINE L2 -661 2653 2551 363 121 0 0 chr9 121913330 121913388 -20358056 + (TC)n Simple_repeat Simple_repeat 1 58 0 367 289 29 87 chr9 121913458 121913766 -20357678 - MIR SINE MIR -1 261 5 32 43 0 0 chr9 121913801 121913847 -20357597 + AT_rich Low_complexity Low_complexity 1 46 0 421 264 48 104 chr9 121914153 121914171 -20357273 - L1M4 LINE L1 -2154 3992 3975 2500 63 7 0 chr9 121914171 121914471 -20356973 + AluSc SINE Alu 1 302 -7 421 264 48 104 chr9 121914471 121914808 -20356636 - L1M4 LINE L1 -2171 3975 3657 793 292 102 51 chr9 121914893 121915549 -20355895 - L1M4 LINE L1 -2926 3220 2522 2054 131 3 29 chr9 121915566 121915880 -20355564 - AluSx SINE Alu -6 306 1 1040 259 23 44 chr9 121916495 121916927 -20354517 - HAL1b LINE L1 -496 852 430 432 0 0 0 chr9 121916990 121917038 -20354406 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr9 121917460 121917483 -20353961 + AT_rich Low_complexity Low_complexity 1 23 0 2111 182 59 0 chr9 121918477 121918938 -20352506 + L1MC3 LINE L1 5444 5931 -1854 216 216 0 0 chr9 121918978 121919029 -20352415 + A-rich Low_complexity Low_complexity 5 55 0 225 347 11 0 chr9 121919237 121919332 -20352112 + MLT1J2 LTR MaLR 85 180 -270 291 338 22 7 chr9 121919396 121919532 -20351912 + MLT1J2 LTR MaLR 279 416 -34 26 0 0 0 chr9 121919841 121919867 -20351577 + AT_rich Low_complexity Low_complexity 1 26 0 270 339 42 25 chr9 121919946 121920064 -20351380 - MIR3 SINE MIR -85 123 4 185 339 32 24 chr9 121920260 121920384 -20351060 + MIR SINE MIR 2 126 -136 196 410 105 0 chr9 121922174 121922279 -20349165 + L2 LINE L2 3198 3313 0 1792 261 53 49 chr9 121923332 121923919 -20347525 - MER77 LTR ERV1 -7 598 10 195 192 19 39 chr9 121924118 121924170 -20347274 + L2 LINE L2 3262 3312 -1 198 263 114 26 chr9 121924252 121924366 -20347078 + MIR SINE MIR 109 232 -30 300 368 8 8 chr9 121924949 121925074 -20346370 + MIR SINE MIR 23 147 -61 347 322 8 25 chr9 121925100 121925221 -20346223 - L2 LINE L2 -5 3308 3190 1734 190 15 52 chr9 121925824 121926229 -20345215 - MLT1B LTR MaLR 0 390 1 306 0 0 0 chr9 121926404 121926438 -20345006 + (TTG)n Simple_repeat Simple_repeat 2 35 0 700 281 37 20 chr9 121926827 121927073 -20344371 - MIR SINE MIR -6 256 7 265 325 49 55 chr9 121927625 121927788 -20343656 + L2 LINE L2 2715 2876 -438 2819 65 6 0 chr9 121928227 121928580 -20342864 + THE1A LTR MaLR 1 355 0 1906 124 79 3 chr9 121929073 121929363 -20342081 - AluSx SINE Alu 0 312 1 512 224 60 127 chr9 121929619 121929887 -20341557 - MIR SINE MIR 0 262 13 395 244 168 8 chr9 121929940 121930071 -20341373 + MIR SINE MIR 97 248 -14 431 277 9 77 chr9 121931101 121931239 -20340205 + MIR SINE MIR 58 177 -85 1566 166 55 60 chr9 121931239 121931606 -20339838 + MLT1A1 LTR MaLR 1 365 0 431 277 9 77 chr9 121931606 121931687 -20339757 + MIR SINE MIR 177 262 0 228 196 98 0 chr9 121931740 121931791 -20339653 - L2 LINE L2 -3 3310 3255 * 587 264 86 36 chr9 121931762 121931982 -20339462 - MIR SINE MIR -24 238 8 204 320 0 20 chr9 121932026 121932076 -20339368 + MIR SINE MIR 22 70 -138 22 0 0 0 chr9 121932166 121932188 -20339256 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr9 121933814 121933839 -20337605 + (TG)n Simple_repeat Simple_repeat 2 26 0 28 0 0 0 chr9 121934034 121934062 -20337382 + AT_rich Low_complexity Low_complexity 1 28 0 256 267 25 43 chr9 121934163 121934324 -20337120 - L1M4 LINE L1 -3754 2392 2235 314 338 73 0 chr9 121936699 121936835 -20334609 + L3 LINE CR1 1429 1574 -3 21 0 0 0 chr9 121937330 121937351 -20334093 + AT_rich Low_complexity Low_complexity 1 21 0 339 364 45 11 chr9 121937464 121937640 -20333804 + MIR3 SINE MIR 5 186 -22 207 139 0 0 chr9 121938208 121938244 -20333200 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 514 342 43 5 chr9 121939544 121939728 -20331716 + MIR3 SINE MIR 8 198 -10 2123 65 10 0 chr9 121940032 121940322 -20331122 + L1PA7 LINE L1 5490 5782 -372 * 40751 32 22 5 chr9 121940319 121946371 -20325073 + L1PA2 LINE L1 1 6155 0 3119 70 0 10 chr9 121946383 121946768 -20324676 + L1PA7 LINE L1 5769 6149 -5 347 263 217 15 chr9 121947149 121947344 -20324100 + MIR SINE MIR 30 262 0 201 273 273 0 chr9 121947367 121947466 -20323978 - MIR SINE MIR -66 142 17 192 125 0 0 chr9 121947517 121947549 -20323895 + (ATGGTG)n Simple_repeat Simple_repeat 4 35 0 525 276 112 14 chr9 121947706 121947920 -20323524 + MIR SINE MIR 2 236 -26 203 187 27 120 chr9 121948297 121948372 -20323072 + L2 LINE L2 3205 3272 0 276 276 97 27 chr9 121949841 121949994 -20321450 - MIR SINE MIR -3 259 84 435 292 50 59 chr9 121950809 121951028 -20320416 - MIR SINE MIR -41 221 5 258 32 0 0 chr9 121951713 121951744 -20319700 + (TG)n Simple_repeat Simple_repeat 2 32 0 342 279 5 0 chr9 121952646 121952731 -20318713 + MIR SINE MIR 77 149 -59 478 300 123 6 chr9 121953037 121953207 -20318237 + MIR SINE MIR 54 243 -19 1690 247 106 51 chr9 121953300 121953662 -20317782 + L1ME3A LINE L1 4887 5228 -942 1800 219 36 14 chr9 121953662 121954019 -20317425 + MLT1A1 LTR MaLR 1 365 0 1690 247 106 51 chr9 121954019 121954864 -20316580 + L1ME3A LINE L1 5228 6161 -9 348 256 24 0 chr9 121955045 121955127 -20316317 - MIR SINE MIR -75 133 50 235 256 24 61 chr9 121955948 121956030 -20315414 - MIR SINE MIR -126 136 58 1810 192 30 40 chr9 121956032 121956402 -20315042 + ERVL LTR ERVL 1843 2208 -3556 211 157 20 20 chr9 121956500 121956551 -20314893 + (CAA)n Simple_repeat Simple_repeat 1 51 0 13911 223 54 53 chr9 121956711 121959708 -20311736 + L1MA9 LINE L1 10 3000 -4333 1536 170 3 68 chr9 121959708 121960019 -20311425 + AluJo SINE Alu 1 291 -21 13911 223 54 53 chr9 121960019 121964117 -20307327 + L1MA9 LINE L1 3000 6830 -503 1016 243 103 37 chr9 121964117 121964438 -20307006 + MER2 DNA MER2_type 1 342 -2 13911 223 54 53 chr9 121964438 121964905 -20306539 + L1MA9 LINE L1 6830 7295 -38 1523 278 58 17 chr9 121964998 121965516 -20305928 + MLT1H1 LTR MaLR 17 555 0 1573 260 78 17 chr9 121965723 121966185 -20305259 + MLT1E2 LTR MaLR 137 626 0 264 379 86 0 chr9 121966357 121966497 -20304947 + L2 LINE L2 3108 3259 -13 246 62 0 0 chr9 121966497 121966529 -20304915 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 288 242 30 0 chr9 121966616 121966682 -20304762 + MIR SINE MIR 82 149 -59 567 279 136 0 chr9 121967412 121967566 -20303878 + MER5A DNA MER1_type 15 189 0 412 242 161 0 chr9 121967839 121967963 -20303481 - MIR SINE MIR -8 254 111 326 312 11 11 chr9 121968225 121968318 -20303126 - L2 LINE L2 -37 3235 3143 472 314 13 13 chr9 121968560 121968716 -20302728 + MIR SINE MIR 107 262 0 2213 117 0 3 chr9 121969903 121970203 -20301241 - AluSx SINE Alu -13 299 1 499 246 8 8 chr9 121970283 121970405 -20301039 - MIR SINE MIR -84 178 57 405 300 23 15 chr9 121971160 121971290 -20300154 + MIR3 SINE MIR 30 160 -48 185 364 53 23 chr9 121971408 121971540 -20299904 - L2 LINE L2 -3 3269 3134 1793 194 0 6 chr9 121971570 121971884 -20299560 + AluJo SINE Alu 1 312 0 266 272 16 104 chr9 121971999 121972124 -20299320 - L2 LINE L2 -220 3052 2939 564 371 79 4 chr9 121972210 121972477 -20298967 - L2 LINE L2 -447 2867 2581 203 216 0 0 chr9 121972605 121972642 -20298802 - L3b LINE CR1 -15 1568 1532 189 0 0 0 chr9 121972666 121972687 -20298757 + (GAAA)n Simple_repeat Simple_repeat 4 24 0 313 208 30 0 chr9 121973099 121973200 -20298244 + CT-rich Low_complexity Low_complexity 2 105 0 636 285 132 0 chr9 121973304 121973532 -20297912 + MIR SINE MIR 3 260 -2 281 279 0 58 chr9 121973666 121973752 -20297692 - MIR SINE MIR -80 182 102 185 364 0 0 chr9 121973929 121973995 -20297449 + L2 LINE L2 3234 3299 -14 225 227 0 0 chr9 121974109 121974153 -20297291 + L2 LINE L2 3221 3264 -8 319 252 99 46 chr9 121974491 121974622 -20296822 + MIR SINE MIR 66 203 -59 969 272 4 4 chr9 121974711 121974950 -20296494 - MIR SINE MIR 0 262 24 953 248 186 44 chr9 121975119 121975574 -20295870 + MLT1G1 LTR MaLR 24 595 0 668 249 12 12 chr9 121975704 121975869 -20295575 + MIR SINE MIR 86 250 -12 206 209 0 23 chr9 121975873 121975916 -20295528 + CT-rich Low_complexity Low_complexity 4 45 0 301 267 176 23 chr9 121975927 121976103 -20295341 - MIR SINE MIR -37 225 23 341 241 93 37 chr9 121976726 121976849 -20294595 - MIR3 SINE MIR -98 110 12 2337 158 0 69 chr9 121977185 121977368 -20294076 + MLT1B LTR MaLR 1 195 -195 2188 115 3 16 chr9 121977368 121977672 -20293772 + AluSx SINE Alu 5 304 -8 2337 158 0 69 chr9 121977672 121977907 -20293537 + MLT1B LTR MaLR 195 390 0 352 118 0 235 chr9 121978576 121978678 -20292766 - MADE1 DNA Mariner -2 78 1 362 245 41 20 chr9 121978776 121978874 -20292570 - MER20 DNA MER1_type -119 100 1 291 286 13 0 chr9 121978882 121978959 -20292485 + MIR SINE MIR 84 161 -101 253 315 55 14 chr9 121979290 121979363 -20292081 + L2 LINE L2 3160 3235 -37 279 282 181 7 chr9 121979369 121979518 -20291926 - MER96 DNA MER1_type? 0 175 1 27 29 0 0 chr9 121979613 121979647 -20291797 + AT_rich Low_complexity Low_complexity 1 34 0 1195 249 103 22 chr9 121980399 121980521 -20290923 + MER113 DNA MER1_type? 1 112 -409 2165 105 13 7 chr9 121980521 121980827 -20290617 + AluSg SINE Alu 1 308 -2 1195 249 103 22 chr9 121980827 121981150 -20290294 + MER113 DNA MER1_type? 112 482 -39 382 397 7 7 chr9 121981257 121981398 -20290046 - MIR3 SINE MIR -37 171 31 21 0 0 0 chr9 121981502 121981523 -20289921 + AT_rich Low_complexity Low_complexity 1 21 0 665 269 149 0 chr9 121981624 121981832 -20289612 - MIR SINE MIR -21 241 3 231 300 146 9 chr9 121981956 121982066 -20289378 + MIR SINE MIR 37 161 -101 2137 112 3 0 chr9 121982395 121982727 -20288717 - AluSq SINE Alu 0 333 1 255 289 92 13 chr9 121983711 121983787 -20287657 + MIR SINE MIR 24 105 -103 181 309 73 0 chr9 121983926 121983981 -20287463 - L2 LINE L2 -1 3312 3254 * 390 323 53 61 chr9 121983958 121984333 -20287111 + L2 LINE L2 2282 2653 -661 231 152 0 0 chr9 121984777 121984823 -20286621 + (CA)n Simple_repeat Simple_repeat 1 46 0 236 361 0 25 chr9 121984960 121985082 -20286362 - L2 LINE L2 -5 3267 3149 450 313 35 87 chr9 121985784 121986316 -20285128 - L2 LINE L2 -43 3229 2685 387 289 144 22 chr9 121987124 121987304 -20284140 + MIR SINE MIR 61 262 0 200 118 29 0 chr9 121987306 121987340 -20284104 + (ATG)n Simple_repeat Simple_repeat 1 35 0 300 314 81 47 chr9 121987426 121987748 -20283696 + L3 LINE CR1 1245 1577 0 245 51 26 0 chr9 121988540 121988579 -20282865 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 250 0 0 chr9 121988580 121988628 -20282816 + GA-rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr9 121988752 121988790 -20282654 + AT_rich Low_complexity Low_complexity 1 38 0 262 343 45 40 chr9 121989233 121989434 -20282010 + L2 LINE L2 3112 3313 0 1104 90 0 3 chr9 121989435 121989669 -20281775 - AluSc SINE Alu -11 298 5 247 338 62 0 chr9 121989801 121989881 -20281563 - MIR SINE MIR -150 112 28 1407 189 87 66 chr9 121990072 121990438 -20281006 + MLT1A2 LTR MaLR 1 374 0 330 214 0 0 chr9 121990667 121990751 -20280693 + CT-rich Low_complexity Low_complexity 1 84 0 430 302 58 89 chr9 121990767 121990877 -20280567 - L2 LINE L2 -5 3267 3155 483 18 0 0 chr9 121990877 121990933 -20280511 + (GA)n Simple_repeat Simple_repeat 1 56 0 430 302 58 89 chr9 121990933 121991170 -20280274 - L2 LINE L2 -117 3155 2931 409 338 26 0 chr9 121992961 121993112 -20278332 + L3 LINE CR1 1317 1471 -106 539 285 34 5 chr9 121993265 121993535 -20277909 + MLT1I LTR MaLR 102 409 0 * 573 186 60 2 chr9 121993533 121993707 -20277737 + MER58A DNA MER1_type 1 223 -1 200 208 21 21 chr9 121993709 121993757 -20277687 + MIR3 SINE MIR 154 201 -7 488 278 6 49 chr9 121993774 121993936 -20277508 - L2 LINE L2 0 3313 3159 305 294 159 40 chr9 121994317 121994443 -20277001 + MIR SINE MIR 52 192 -70 552 217 9 0 chr9 121994444 121994559 -20276885 + L1ME1 LINE L1 6046 6161 -5 224 318 174 30 chr9 121994752 121994884 -20276560 + L2 LINE L2 3117 3267 -5 183 316 71 20 chr9 121995172 121995270 -20276174 + L2 LINE L2 3192 3294 -19 201 414 54 9 chr9 121995326 121995437 -20276007 - L2 LINE L2 -41 3231 3116 508 222 32 0 chr9 121995623 121995749 -20275695 - MER103 DNA DNA -11 155 26 861 279 38 21 chr9 121995767 121996057 -20275387 - MLT1I LTR MaLR -17 392 98 1905 153 19 6 chr9 121996228 121996548 -20274896 + L1MB4 LINE L1 5609 5932 -242 1238 183 110 54 chr9 121996548 121996865 -20274579 + MER2 DNA MER2_type 1 335 -10 1104 209 38 0 chr9 121996893 121997132 -20274312 + L1MB4 LINE L1 5933 6180 0 237 305 78 70 chr9 121997181 121997309 -20274135 - L2 LINE L2 -15 3257 3129 289 286 281 0 chr9 121998134 121998330 -20273114 + MIR SINE MIR 12 262 0 229 259 47 47 chr9 121998406 121998491 -20272953 - MIR SINE MIR -84 178 94 296 198 115 11 chr9 121999049 121999144 -20272300 + MIR SINE MIR 100 197 -39 305 344 8 8 chr9 121999324 121999446 -20271998 + CT-rich Low_complexity Low_complexity 3 124 0 284 296 45 11 chr9 122000410 122000498 -20270946 - L2 LINE L2 0 3272 3182 392 298 206 5 chr9 122000531 122000749 -20270695 - MIR SINE MIR 0 262 1 181 171 57 0 chr9 122000810 122000845 -20270599 - L2 LINE L2 -215 3057 3021 204 220 0 34 chr9 122000938 122000997 -20270447 + L2 LINE L2 3216 3272 0 21 0 0 0 chr9 122001355 122001376 -20270068 + AT_rich Low_complexity Low_complexity 1 21 0 248 291 66 66 chr9 122001546 122001742 -20269702 - L2 LINE L2 -559 2755 2560 202 200 0 40 chr9 122001900 122001975 -20269469 + GA-rich Low_complexity Low_complexity 3 74 0 560 248 12 6 chr9 122002257 122002418 -20269026 - MER104 DNA Tc2 -11 169 8 2959 293 92 29 chr9 122002419 122003758 -20267686 + L2 LINE L2 1414 2836 -478 310 286 82 27 chr9 122003773 122003920 -20267524 + L2 LINE L2 3159 3313 0 306 265 20 29 chr9 122004499 122004601 -20266843 + MIR SINE MIR 105 205 -57 221 117 17 83 chr9 122004605 122004665 -20266779 + A-rich Low_complexity Low_complexity 3 58 0 2566 247 51 43 chr9 122004880 122005965 -20265479 - L1ME3A LINE L1 -30 6140 5045 445 359 34 4 chr9 122006226 122006488 -20264956 + L2 LINE L2 2503 2772 -542 298 340 43 79 chr9 122006650 122006929 -20264515 + L2 LINE L2 2994 3262 -10 581 337 129 52 chr9 122007020 122007556 -20263888 - L3 LINE CR1 -1 1576 992 360 240 57 74 chr9 122007556 122007731 -20263713 - MER69A DNA AcHobo -4 173 2 581 337 129 52 chr9 122007731 122007766 -20263678 - L3 LINE CR1 -585 992 961 289 167 83 56 chr9 122007826 122007898 -20263546 + MIR SINE MIR 2 75 -187 298 296 117 25 chr9 122008438 122008576 -20262868 - L1ME4a LINE L1 0 6121 5997 2247 84 0 7 chr9 122008576 122008891 -20262553 - AluY SINE Alu 0 313 1 298 296 117 25 chr9 122008891 122008908 -20262536 - L1ME4a LINE L1 -124 5997 5983 2103 121 0 0 chr9 122008908 122009189 -20262255 - AluSg SINE Alu -29 281 1 298 296 117 25 chr9 122009189 122009355 -20262089 - L1ME4a LINE L1 -138 5983 5768 252 340 186 0 chr9 122010280 122010474 -20260970 + MIR SINE MIR 18 247 -15 359 294 0 9 chr9 122010858 122010967 -20260477 + MIR SINE MIR 65 172 -90 36 23 0 0 chr9 122011063 122011106 -20260338 + AT_rich Low_complexity Low_complexity 1 43 0 2209 121 0 3 chr9 122011218 122011523 -20259921 + AluSc SINE Alu 1 304 -5 750 251 35 0 chr9 122012355 122012526 -20258918 - MER3 DNA MER1_type -79 130 1 976 222 0 0 chr9 122012560 122012740 -20258704 + MER58A DNA MER1_type 45 224 0 315 333 19 0 chr9 122012745 122012853 -20258591 + MIR SINE MIR 44 153 -55 237 269 115 0 chr9 122013007 122013085 -20258359 + MER94 DNA DNA 44 130 -4 335 256 32 16 chr9 122013790 122013915 -20257529 + CT-rich Low_complexity Low_complexity 6 132 0 5051 67 24 6 chr9 122014288 122014915 -20256529 - L1PA10 LINE L1 -8 6160 5523 300 187 56 122 chr9 122014943 122015050 -20256394 + Charlie5 DNA MER1_type 2486 2585 -27 212 294 49 29 chr9 122015263 122015365 -20256079 + L2 LINE L2 2948 3051 -221 186 263 0 0 chr9 122015692 122015749 -20255695 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 207 100 0 0 chr9 122016419 122016449 -20254995 + (CA)n Simple_repeat Simple_repeat 1 30 0 289 282 16 89 chr9 122017088 122017212 -20254232 - MIR SINE MIR -58 150 36 563 274 47 37 chr9 122017263 122017406 -20254038 - MIR SINE MIR -26 236 89 3635 72 20 0 chr9 122017406 122017850 -20253594 + MLT2A2 LTR ERVL 1 453 0 563 274 47 37 chr9 122017850 122017921 -20253523 - MIR SINE MIR -173 89 20 2463 54 3 22 chr9 122018600 122018914 -20252530 + AluY SINE Alu 1 308 -3 266 218 269 0 chr9 122018973 122019051 -20252393 + MIR SINE MIR 53 151 -111 219 328 156 0 chr9 122019194 122019322 -20252122 + L2 LINE L2 2930 3077 -195 203 319 78 69 chr9 122020884 122021000 -20250444 + L2 LINE L2 3125 3241 -31 981 163 0 6 chr9 122021035 122021388 -20250056 + GA-rich Low_complexity Low_complexity 1 350 0 315 255 220 35 chr9 122022493 122022634 -20248810 - L2 LINE L2 -89 3183 3017 814 191 0 0 chr9 122022700 122022831 -20248613 + FLAM_A SINE Alu 10 140 -2 318 226 32 54 chr9 122023053 122023146 -20248298 + MLT1E LTR MaLR 76 166 -401 421 292 6 6 chr9 122023172 122023340 -20248104 + CT-rich Low_complexity Low_complexity 1 168 0 821 213 251 34 chr9 122023340 122023631 -20247813 + MLT1E LTR MaLR 232 585 -8 285 256 0 0 chr9 122023694 122023776 -20247668 + (TA)n Simple_repeat Simple_repeat 1 82 0 180 0 0 0 chr9 122023783 122023803 -20247641 + (TG)n Simple_repeat Simple_repeat 2 21 0 356 287 43 0 chr9 122023887 122023981 -20247463 - MIR SINE MIR -145 117 20 2499 148 32 2 chr9 122024424 122024857 -20246587 + L1MA4 LINE L1 5575 6020 -280 1105 303 65 34 chr9 122025347 122025911 -20245533 - L2 LINE L2 -24 3289 2697 933 211 46 0 chr9 122025911 122026105 -20245339 - MER58A DNA MER1_type -1 223 21 347 387 0 7 chr9 122026141 122026291 -20245153 - MIR3 SINE MIR -40 168 20 2158 125 0 3 chr9 122026901 122027213 -20244231 + AluSx SINE Alu 1 311 -1 242 333 52 0 chr9 122027230 122027326 -20244118 + MIR3 SINE MIR 76 176 -32 231 250 0 62 chr9 122027911 122027975 -20243469 + MIR SINE MIR 116 175 -87 539 241 70 21 chr9 122029764 122029951 -20241493 - MIR3 SINE MIR -5 203 8 272 273 117 10 chr9 122030021 122030180 -20241264 - MIR SINE MIR -27 181 19 516 304 117 14 chr9 122030399 122030613 -20240831 + MIR SINE MIR 22 257 -5 392 364 21 5 chr9 122030911 122031098 -20240346 - MIR3 SINE MIR -10 198 9 977 239 14 24 chr9 122031442 122031655 -20239789 + MER58A DNA MER1_type 11 221 -3 32 0 0 0 chr9 122032229 122032261 -20239183 + AT_rich Low_complexity Low_complexity 1 32 0 552 279 23 6 chr9 122032274 122032446 -20238998 + L3 LINE CR1 1353 1527 -50 422 215 12 29 chr9 122032976 122033148 -20238296 + CT-rich Low_complexity Low_complexity 4 172 0 293 236 180 0 chr9 122033278 122033367 -20238077 - MIR SINE MIR -48 214 110 2322 76 0 44 chr9 122033581 122033896 -20237548 + AluSg SINE Alu 1 301 -9 315 316 36 22 chr9 122033915 122034054 -20237390 + MIR3 SINE MIR 20 160 -48 195 107 0 0 chr9 122034483 122034511 -20236933 - MER5A DNA MER1_type -118 71 44 372 324 152 31 chr9 122034560 122034828 -20236616 + L2 LINE L2 2947 3254 -18 2647 48 0 3 chr9 122034828 122035137 -20236307 - AluY SINE Alu -3 308 1 372 324 152 31 chr9 122035137 122035158 -20236286 + L2 LINE L2 3254 3271 -1 331 313 9 18 chr9 122035554 122035666 -20235778 + L2 LINE L2 2623 2733 -581 2176 96 3 10 chr9 122035907 122036200 -20235244 - AluSg1 SINE Alu -18 291 1 1842 139 29 18 chr9 122036547 122036828 -20234616 + AluSx SINE Alu 1 284 -28 243 0 0 0 chr9 122036834 122036861 -20234583 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1328 115 0 34 chr9 122036955 122037163 -20234281 - L1PA15 LINE L1 -6 6159 5959 1585 318 122 24 chr9 122037192 122037611 -20233833 - L2 LINE L2 -45 3268 2891 2410 176 28 13 chr9 122037611 122038083 -20233361 - L1MA7 LINE L1 -11 6280 5802 1585 318 122 24 chr9 122038083 122038329 -20233115 - L2 LINE L2 -422 2891 2670 338 130 0 0 chr9 122038329 122038383 -20233061 - L1MA6 LINE L1 -6 6294 6241 1585 318 122 24 chr9 122038383 122038582 -20232862 - L2 LINE L2 -643 2670 2492 2105 109 0 3 chr9 122038582 122038907 -20232537 + AluSq SINE Alu 1 324 0 1585 318 122 24 chr9 122038907 122039186 -20232258 - L2 LINE L2 -821 2492 1997 2088 134 0 0 chr9 122039190 122039473 -20231971 + AluSx SINE Alu 1 283 -29 510 17 0 0 chr9 122039473 122039532 -20231912 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 495 282 127 87 chr9 122039578 122040050 -20231394 + L2 LINE L2 2813 3303 -10 315 306 92 13 chr9 122040166 122040344 -20231100 + MIR3 SINE MIR 9 196 -61 425 317 87 6 chr9 122040769 122040952 -20230492 - MIR SINE MIR -6 256 59 234 81 0 0 chr9 122040985 122041022 -20230422 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 1717 292 74 36 chr9 122041028 122042006 -20229438 - L2 LINE L2 -3 3310 2260 297 321 61 79 chr9 122042056 122042551 -20228893 - L2 LINE L2 0 3313 2828 279 258 16 121 chr9 122042794 122042984 -20228460 + L1MC4 LINE L1 7810 7979 -63 715 161 0 57 chr9 122043090 122043214 -20228230 - FLAM_C SINE Alu -10 133 17 21 0 0 0 chr9 122043279 122043300 -20228144 + AT_rich Low_complexity Low_complexity 1 21 0 2035 78 4 19 chr9 122043342 122043611 -20227833 - AluSx SINE Alu -46 266 2 526 290 43 19 chr9 122044390 122044552 -20226892 + MIR3 SINE MIR 36 201 -7 260 271 159 26 chr9 122044945 122045096 -20226348 - MIR SINE MIR -15 247 77 192 351 149 0 chr9 122045137 122045211 -20226233 + L2 LINE L2 3138 3222 -50 265 299 0 62 chr9 122045801 122045898 -20225546 + MIR SINE MIR 80 170 -92 232 185 28 0 chr9 122045937 122045991 -20225453 - MIR SINE MIR -52 156 99 212 154 26 26 chr9 122046078 122046156 -20225288 + (TA)n Simple_repeat Simple_repeat 1 78 0 440 234 87 49 chr9 122046168 122046352 -20225092 - MIR SINE MIR -56 206 16 263 323 40 65 chr9 122046571 122046695 -20224749 + L2 LINE L2 3144 3264 -8 308 358 7 13 chr9 122047164 122047315 -20224129 + CT-rich Low_complexity Low_complexity 2 151 0 393 356 48 21 chr9 122047665 122048002 -20223442 - L1MC4a LINE L1 -1899 5909 5564 1488 203 121 18 chr9 122048074 122048464 -20222980 - L1ME1 LINE L1 -15 6151 5722 510 298 86 0 chr9 122048571 122048722 -20222722 - MER63A DNA MER1_type 0 210 47 217 205 96 72 chr9 122049369 122049452 -20221992 + MIR3 SINE MIR 109 193 -15 2248 117 0 0 chr9 122049837 122050145 -20221299 + AluSc SINE Alu 1 308 -1 260 287 16 101 chr9 122050236 122050365 -20221079 - MIR SINE MIR -65 143 26 384 311 80 76 chr9 122050507 122050796 -20220648 + L2 LINE L2 2978 3267 -5 329 221 60 40 chr9 122051139 122051288 -20220156 + L1ME LINE L1 5600 5751 -370 2385 78 0 19 chr9 122051466 122051773 -20219671 - AluY SINE Alu -10 301 1 276 284 11 32 chr9 122052651 122052746 -20218698 + GA-rich Low_complexity Low_complexity 2 94 0 651 260 63 66 chr9 122052929 122053357 -20218087 - L1ME4a LINE L1 -169 5952 5501 360 285 23 81 chr9 122053535 122053707 -20217737 + MIR3 SINE MIR 37 198 -10 220 336 10 19 chr9 122053709 122053813 -20217631 + GA-rich Low_complexity Low_complexity 5 107 0 212 300 63 95 chr9 122054284 122054438 -20217006 + MIR3 SINE MIR 5 153 -55 737 156 43 147 chr9 122054438 122054649 -20216795 + MER5A DNA MER1_type 1 189 0 212 300 63 95 chr9 122054649 122054684 -20216760 + MIR3 SINE MIR 153 188 -20 2205 90 7 14 chr9 122054773 122055062 -20216382 - AluSx SINE Alu -25 287 1 273 273 156 65 chr9 122055158 122055312 -20216132 + MER5A DNA MER1_type 13 180 -9 255 248 183 20 chr9 122055582 122055735 -20215709 + MIR SINE MIR 20 197 -65 180 0 0 0 chr9 122056431 122056451 -20214993 + (A)n Simple_repeat Simple_repeat 1 20 0 484 238 0 40 chr9 122056671 122056797 -20214647 - MIR SINE MIR -114 148 28 225 295 0 21 chr9 122057215 122057310 -20214134 + (CAT)n Simple_repeat Simple_repeat 3 95 0 2364 71 0 7 chr9 122057468 122057763 -20213681 - AluY SINE Alu -18 293 1 348 315 28 34 chr9 122058562 122058740 -20212704 + MIR SINE MIR 25 201 -61 252 299 32 39 chr9 122058899 122059053 -20212391 - Charlie8 DNA MER1_type -2162 255 103 1167 70 32 6 chr9 122059075 122059232 -20212212 + L1PA13 LINE L1 6001 6161 -2 21 36 0 0 chr9 122059562 122059590 -20211854 + AT_rich Low_complexity Low_complexity 1 28 0 275 289 19 39 chr9 122059864 122059968 -20211476 + L2 LINE L2 3166 3267 -5 201 45 45 23 chr9 122059993 122060037 -20211407 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2110 93 3 31 chr9 122060039 122060329 -20211115 - AluSq SINE Alu -31 282 1 315 268 102 16 chr9 122061116 122061243 -20210201 + L2 LINE L2 2578 2715 -599 302 320 47 23 chr9 122061319 122061447 -20209997 + L1ME LINE L1 80 210 -5860 186 224 0 61 chr9 122061548 122061597 -20209847 + MIR SINE MIR 216 261 -1 230 362 107 18 chr9 122061690 122061914 -20209530 - L2 LINE L2 -896 2418 2175 264 335 30 67 chr9 122062058 122062072 -20209372 - MER91A DNA MER1_type -36 160 147 2429 75 3 7 chr9 122062072 122062379 -20209065 + AluSq SINE Alu 3 308 -5 264 335 30 67 chr9 122062379 122062528 -20208916 - MER91A DNA MER1_type -49 147 3 230 265 122 68 chr9 122062628 122062775 -20208669 - L3 LINE CR1 -120 1457 1303 555 340 11 0 chr9 122063295 122063486 -20207958 - MIR3 SINE MIR -3 205 13 366 308 17 25 chr9 122064198 122064318 -20207126 - L2 LINE L2 -9 3304 3186 303 289 39 32 chr9 122064780 122064926 -20206518 + MIR SINE MIR 40 185 -63 240 224 0 30 chr9 122064955 122065022 -20206422 + GA-rich Low_complexity Low_complexity 1 65 0 2509 173 42 86 chr9 122065043 122065478 -20205966 + L1MA9 LINE L1 4048 4501 -1645 1920 138 18 3 chr9 122065478 122065761 -20205683 + AluSx SINE Alu 1 287 -25 2509 173 42 86 chr9 122065761 122065813 -20205631 + L1MA9 LINE L1 4501 4554 -1592 2048 128 42 0 chr9 122065813 122066101 -20205343 + AluSx SINE Alu 1 300 -12 2509 173 42 86 chr9 122066101 122066341 -20205103 + L1MA9 LINE L1 4554 4744 -1402 45 0 0 0 chr9 122066369 122066414 -20205030 + AT_rich Low_complexity Low_complexity 1 45 0 666 176 0 9 chr9 122066431 122066539 -20204905 - AluJo SINE Alu -171 141 35 2068 177 3 0 chr9 122066539 122066867 -20204577 - MER7A DNA MER2_type -19 327 1 5787 168 26 13 chr9 122066868 122068417 -20203027 + L1MA9 LINE L1 4742 6311 -1 284 301 64 58 chr9 122068421 122068594 -20202850 - MIR3 SINE MIR -23 185 12 770 204 56 37 chr9 122068599 122068815 -20202629 + MIR SINE MIR 4 223 -39 187 30 30 30 chr9 122069044 122069077 -20202367 + (TAA)n Simple_repeat Simple_repeat 1 33 0 232 327 182 27 chr9 122069703 122070116 -20201328 + L2 LINE L2 558 1034 -2280 3566 127 19 62 chr9 122070164 122070561 -20200883 - L1MA8 LINE L1 -2 6289 5929 2381 77 7 0 chr9 122070561 122070861 -20200583 + AluSp SINE Alu 1 302 -11 3566 127 19 62 chr9 122070861 122071103 -20200341 - L1MA8 LINE L1 -362 5929 5678 1527 131 34 8 chr9 122071482 122071749 -20199695 + L1MA2 LINE L1 6029 6302 -2 27 0 0 0 chr9 122071753 122071780 -20199664 + AT_rich Low_complexity Low_complexity 1 27 0 462 318 189 50 chr9 122071872 122072529 -20198915 + L2 LINE L2 1752 2499 -815 1469 222 142 20 chr9 122072656 122073057 -20198387 + L1MD2 LINE L1 5910 6359 0 308 298 117 18 chr9 122073063 122073234 -20198210 + L2 LINE L2 2555 2742 -572 1674 244 109 26 chr9 122073260 122073793 -20197651 + MER119 DNA MER1_type 3 579 -4 346 265 104 62 chr9 122074032 122074243 -20197201 + L2 LINE L2 3091 3310 -3 381 22 0 0 chr9 122074508 122074554 -20196890 + (CA)n Simple_repeat Simple_repeat 1 46 0 612 292 72 24 chr9 122075068 122075097 -20196347 - MIR SINE MIR -21 241 215 2285 115 0 6 chr9 122075097 122075409 -20196035 - AluSx SINE Alu -2 310 1 612 292 72 24 chr9 122075409 122075588 -20195856 - MIR SINE MIR -47 215 23 339 213 11 149 chr9 122076363 122076551 -20194893 - MER112 DNA MER1_type -96 164 3 299 256 60 159 chr9 122076742 122077145 -20194299 + L2 LINE L2 2910 3272 0 785 201 18 87 chr9 122078254 122078483 -20192961 - MER20 DNA MER1_type 0 219 7 395 238 48 0 chr9 122078507 122078591 -20192853 + MER5B DNA MER1_type 75 162 -16 221 265 0 44 chr9 122079210 122079278 -20192166 + MIR SINE MIR 133 197 -65 283 283 133 26 chr9 122079623 122079736 -20191708 + L2 LINE L2 3145 3269 -3 320 246 47 69 chr9 122080380 122080555 -20190889 - MIR SINE MIR -46 216 48 550 248 106 25 chr9 122080565 122080763 -20190681 + MIR SINE MIR 6 219 -43 181 173 39 58 chr9 122080879 122080931 -20190513 - MIR SINE MIR -92 170 120 612 307 35 20 chr9 122081310 122081512 -20189932 - MIR3 SINE MIR -3 205 1 273 369 0 33 chr9 122082344 122082466 -20188978 + L2 LINE L2 3154 3271 -1 304 395 16 0 chr9 122082813 122082942 -20188502 - MIR3 SINE MIR -48 160 30 310 335 70 15 chr9 122083085 122083254 -20188190 + MIR SINE MIR 5 188 -67 603 323 5 14 chr9 122083955 122084178 -20187266 + MIR SINE MIR 39 259 -3 314 253 30 10 chr9 122084639 122084738 -20186706 + GA-rich Low_complexity Low_complexity 2 102 0 205 280 0 0 chr9 122084964 122085014 -20186430 + L2 LINE L2 3264 3313 0 1753 140 0 0 chr9 122085589 122085846 -20185598 - AluSg SINE Alu -6 304 48 463 258 83 7 chr9 122085971 122086118 -20185326 + MIR SINE MIR 94 251 -11 21 0 0 0 chr9 122086275 122086296 -20185148 + AT_rich Low_complexity Low_complexity 1 21 0 15132 144 30 10 chr9 122086379 122087317 -20184127 + Tigger1 DNA MER2_type 1 918 -1500 2160 120 0 3 chr9 122087317 122087617 -20183827 - AluSx SINE Alu -13 299 1 15132 144 30 10 chr9 122087617 122088100 -20183344 + Tigger1 DNA MER2_type 918 1390 -1028 1861 108 0 0 chr9 122088100 122088349 -20183095 + AluSc SINE Alu 61 309 0 15132 144 30 10 chr9 122088349 122089296 -20182148 + Tigger1 DNA MER2_type 1390 2418 0 191 286 20 0 chr9 122089380 122089429 -20182015 + MIR SINE MIR 81 130 -78 369 0 0 0 chr9 122090074 122090115 -20181329 + (TG)n Simple_repeat Simple_repeat 1 41 0 867 166 45 0 chr9 122090208 122090365 -20181079 + MER20 DNA MER1_type 56 219 0 283 382 42 7 chr9 122090926 122091070 -20180374 - MIR SINE MIR -90 172 24 644 328 91 23 chr9 122091597 122091939 -20179505 - L2 LINE L2 0 3313 2949 443 265 47 85 chr9 122092058 122092162 -20179282 - MIR SINE MIR -6 256 162 2545 44 0 3 chr9 122092162 122092460 -20178984 - AluY SINE Alu -14 297 1 443 265 47 85 chr9 122092460 122092566 -20178878 - MIR SINE MIR -100 162 54 987 190 146 58 chr9 122092568 122092709 -20178735 + MER33 DNA MER1_type 1 128 -2457 1331 160 138 7 chr9 122092709 122092984 -20178460 - AluJo SINE Alu -1 311 1 987 190 146 58 chr9 122092984 122093137 -20178307 + MER33 DNA MER1_type 128 321 -3 200 258 61 0 chr9 122093937 122094003 -20177441 + L2 LINE L2 2209 2278 -1036 478 170 0 50 chr9 122094009 122094109 -20177335 + MIR SINE MIR 79 173 -89 788 221 194 46 chr9 122095530 122095942 -20175502 + Charlie7 DNA MER1_type 219 691 -1921 2302 109 7 0 chr9 122096047 122096349 -20175095 + AluSp SINE Alu 1 304 -9 275 71 24 0 chr9 122096349 122096391 -20175053 + (GA)n Simple_repeat Simple_repeat 1 43 0 300 304 115 16 chr9 122096446 122096637 -20174807 + L2 LINE L2 2282 2491 -823 283 351 33 49 chr9 122097257 122097502 -20173942 - MIR SINE MIR -15 247 7 316 299 83 80 chr9 122097974 122098299 -20173145 - L2 LINE L2 -111 3161 2836 1296 140 29 0 chr9 122098373 122098580 -20172864 - L1PA10 LINE L1 0 6168 5956 215 242 91 15 chr9 122098609 122098675 -20172769 + L2 LINE L2 3242 3312 -1 485 343 82 39 chr9 122098898 122099694 -20171750 - L2 LINE L2 -787 2527 1698 2009 143 0 3 chr9 122101975 122102268 -20169176 + AluSg SINE Alu 1 292 -18 311 351 16 32 chr9 122103011 122103196 -20168248 + MER5A DNA MER1_type 7 188 -1 259 333 12 0 chr9 122103532 122103616 -20167828 - MIR SINE MIR -19 243 159 904 276 102 23 chr9 122103617 122104099 -20167345 + MLT1H LTR MaLR 1 520 -29 491 261 35 21 chr9 122104153 122104295 -20167149 - MIR SINE MIR -101 161 18 2059 150 0 7 chr9 122104408 122104714 -20166730 + AluJb SINE Alu 1 304 -8 21 0 0 0 chr9 122104738 122104759 -20166685 + AT_rich Low_complexity Low_complexity 1 21 0 257 281 61 12 chr9 122104759 122104841 -20166603 + MER5A DNA MER1_type 82 167 -22 277 343 28 28 chr9 122105792 122105935 -20165509 + MIR3 SINE MIR 38 180 -28 523 291 42 26 chr9 122106458 122106647 -20164797 + MIR3 SINE MIR 6 197 -11 188 308 0 0 chr9 122106926 122106978 -20164466 - L2 LINE L2 -4 3268 3217 276 299 142 24 chr9 122107401 122107528 -20163916 - MIR3 SINE MIR -31 177 36 297 238 128 97 chr9 122108452 122108679 -20162765 - MER102b DNA MER1_type 0 341 108 349 238 6 125 chr9 122109154 122109314 -20162130 + MIR3 SINE MIR 32 172 -36 219 88 0 0 chr9 122109453 122109487 -20161957 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 183 316 25 25 chr9 122109723 122109802 -20161642 + MIR3 SINE MIR 95 173 -35 2196 56 31 72 chr9 122109820 122110139 -20161305 + AluY SINE Alu 1 306 -5 189 214 0 0 chr9 122110167 122110209 -20161235 + GA-rich Low_complexity Low_complexity 2 43 0 1204 216 0 0 chr9 122110349 122110557 -20160887 - MER58A DNA MER1_type -16 208 1 555 262 19 37 chr9 122110566 122110780 -20160664 + L2 LINE L2 3104 3313 0 370 192 27 0 chr9 122110903 122110976 -20160468 - MIR SINE MIR -109 153 79 463 246 24 8 chr9 122112517 122112643 -20158801 - MER113 DNA MER1_type? -80 441 314 1675 178 210 9 chr9 122112644 122112992 -20158452 + MER47B DNA MER2_type 1 418 0 2137 108 0 14 chr9 122113009 122113297 -20158147 - AluSx SINE Alu -28 284 1 630 257 54 76 chr9 122113305 122113620 -20157824 - MER113 DNA MER1_type? -213 308 1 206 355 24 8 chr9 122113698 122113822 -20157622 + MIR SINE MIR 19 144 -118 538 276 38 49 chr9 122114068 122114332 -20157112 + MIR SINE MIR 2 262 0 184 379 15 0 chr9 122115001 122115133 -20156311 + L2 LINE L2 2841 2974 -298 326 331 70 25 chr9 122115289 122115531 -20155913 + MIR SINE MIR 6 262 0 201 388 25 0 chr9 122115619 122115699 -20155745 + L2 LINE L2 3141 3222 -50 334 273 18 18 chr9 122116883 122116993 -20154451 - MIR3 SINE MIR -91 117 8 620 264 78 74 chr9 122117014 122117272 -20154172 - MIR SINE MIR -1 261 3 197 288 102 34 chr9 122118504 122118622 -20152822 + MIR SINE MIR 16 141 -121 4518 160 60 0 chr9 122119037 122119854 -20151590 - L1MC1 LINE L1 0 6333 5468 201 295 80 36 chr9 122119979 122120091 -20151353 + L2 LINE L2 3156 3272 0 238 252 130 65 chr9 122120190 122120313 -20151131 - MIR3 SINE MIR -43 165 35 193 233 174 47 chr9 122121014 122121100 -20150344 + MIR SINE MIR 17 113 -95 282 305 43 28 chr9 122121442 122121583 -20149861 - MER5B DNA MER1_type 0 178 36 1735 88 0 8 chr9 122122130 122122369 -20149075 - L1PA8 LINE L1 -1 6171 5935 1949 137 65 0 chr9 122123034 122123327 -20148117 - AluSx SINE Alu 0 312 1 1904 120 98 0 chr9 122123662 122123936 -20147508 - AluSx SINE Alu -11 301 1 336 281 35 18 chr9 122124347 122124461 -20146983 + L2 LINE L2 3192 3307 -6 266 329 0 0 chr9 122124482 122124561 -20146883 + CT-rich Low_complexity Low_complexity 1 79 0 449 278 77 0 chr9 122124595 122124764 -20146680 - MIR SINE MIR -62 200 19 297 0 0 0 chr9 122125052 122125085 -20146359 + (T)n Simple_repeat Simple_repeat 1 33 0 1874 149 0 30 chr9 122125807 122126108 -20145336 + AluJo SINE Alu 1 292 -20 305 281 33 25 chr9 122126548 122126669 -20144775 - MIR SINE MIR -12 250 129 2539 63 0 3 chr9 122126676 122126975 -20144469 + AluY SINE Alu 1 298 -13 212 220 0 68 chr9 122127213 122127272 -20144172 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 1100 286 62 27 chr9 122127298 122127749 -20143695 + L2 LINE L2 2835 3301 -12 2340 99 0 7 chr9 122127750 122128053 -20143391 + AluSx SINE Alu 1 301 -11 237 293 68 39 chr9 122128081 122128289 -20143155 - L1P5 LINE L1 -583 5573 5353 390 302 60 0 chr9 122129217 122129366 -20142078 + MIR SINE MIR 48 205 -57 24 32 0 0 chr9 122129605 122129636 -20141808 + AT_rich Low_complexity Low_complexity 1 31 0 2145 113 3 3 chr9 122129643 122129936 -20141508 + AluSx SINE Alu 3 295 -17 527 254 18 127 chr9 122130317 122130436 -20141008 - MIR SINE MIR 0 262 188 1635 176 0 28 chr9 122130436 122130726 -20140718 - AluJo SINE Alu -25 287 6 527 254 18 127 chr9 122130726 122130881 -20140563 - MIR SINE MIR -74 188 18 265 273 38 0 chr9 122130919 122131029 -20140415 + MIR SINE MIR 73 185 -62 1127 171 0 11 chr9 122132838 122133025 -20138419 - AluJb SINE Alu 0 312 128 2301 75 3 53 chr9 122133027 122133347 -20138097 - AluSg SINE Alu -6 304 1 221 293 112 17 chr9 122133404 122133520 -20137924 - MIR SINE MIR -59 149 23 1433 170 43 50 chr9 122134331 122134631 -20136813 - AluJo SINE Alu -14 298 1 723 288 57 67 chr9 122134640 122134953 -20136491 + L2 LINE L2 2943 3253 -60 1046 181 19 29 chr9 122134953 122135163 -20136281 - MER3 DNA MER1_type 0 209 2 723 288 57 67 chr9 122135163 122135220 -20136224 + L2 LINE L2 3253 3309 -4 180 0 0 0 chr9 122135248 122135268 -20136176 + (T)n Simple_repeat Simple_repeat 1 20 0 429 306 151 4 chr9 122135420 122135652 -20135792 + L3 LINE CR1 1247 1512 -65 295 315 98 10 chr9 122135827 122136024 -20135420 + MIR SINE MIR 8 218 -44 522 0 0 0 chr9 122137733 122137791 -20133653 + (TG)n Simple_repeat Simple_repeat 2 59 0 252 339 8 25 chr9 122137991 122138109 -20133335 + MIR3 SINE MIR 15 130 -78 216 0 0 0 chr9 122138423 122138447 -20132997 + (TG)n Simple_repeat Simple_repeat 1 24 0 198 0 0 0 chr9 122138451 122138473 -20132971 + (TA)n Simple_repeat Simple_repeat 2 23 0 321 145 0 0 chr9 122139045 122139107 -20132337 + (TC)n Simple_repeat Simple_repeat 2 63 0 223 255 0 0 chr9 122139834 122139885 -20131559 + (CA)n Simple_repeat Simple_repeat 2 52 0 253 167 28 28 chr9 122139933 122140005 -20131439 + (CA)n Simple_repeat Simple_repeat 2 73 0 270 203 0 27 chr9 122140528 122140602 -20130842 + (CTCG)n Simple_repeat Simple_repeat 2 73 0 455 196 36 36 chr9 122141674 122141812 -20129632 + MIR SINE MIR 78 215 -47 280 239 0 15 chr9 122141818 122141885 -20129559 + MIR SINE MIR 188 253 -9 262 241 35 11 chr9 122142483 122142570 -20128874 + CT-rich Low_complexity Low_complexity 1 89 0 202 288 66 111 chr9 122142904 122143130 -20128314 - MIR SINE MIR -18 244 29 186 217 67 0 chr9 122144714 122144774 -20126670 - MIR SINE MIR -1 261 198 1150 149 56 152 chr9 122144822 122145145 -20126299 + AluJb SINE Alu 1 292 -10 373 172 10 10 chr9 122145161 122145260 -20126184 + CT-rich Low_complexity Low_complexity 2 100 0 312 289 240 9 chr9 122145668 122145899 -20125545 + L2 LINE L2 2755 3034 -238 616 250 59 49 chr9 122146108 122146312 -20125132 - MIR SINE MIR -29 233 28 195 42 0 0 chr9 122146948 122146972 -20124472 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 917 287 46 39 chr9 122147321 122147821 -20123623 + MLT1K LTR MaLR 20 580 -8 1032 246 98 27 chr9 122148010 122148593 -20122851 + MLT1E3 LTR MaLR 1 624 0 218 232 145 14 chr9 122149276 122149345 -20122099 + MIR SINE MIR 151 228 -34 446 239 69 15 chr9 122149408 122149538 -20121906 - MIR SINE MIR -2 260 124 185 0 0 39 chr9 122149954 122149980 -20121464 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2292 103 3 6 chr9 122149988 122150299 -20121145 + AluSp SINE Alu 1 310 -3 231 36 0 0 chr9 122150329 122150357 -20121087 + (A)n Simple_repeat Simple_repeat 1 28 0 22 88 0 0 chr9 122150556 122150613 -20120831 + AT_rich Low_complexity Low_complexity 1 57 0 2265 104 0 0 chr9 122151295 122151583 -20119861 + AluSg SINE Alu 1 288 -22 510 227 114 73 chr9 122151726 122151946 -20119498 - MLT1K LTR MaLR 0 588 360 198 235 143 41 chr9 122152368 122152466 -20118978 + MIR SINE MIR 77 184 -78 1132 251 102 42 chr9 122152976 122153406 -20118038 + MLT2B1 LTR ERVL 3 466 -54 195 42 0 0 chr9 122153406 122153430 -20118014 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 1132 251 102 42 chr9 122153430 122153478 -20117966 + MLT2B1 LTR ERVL 466 510 -10 201 337 174 0 chr9 122153484 122153570 -20117874 + MIR3 SINE MIR 88 188 -20 289 292 119 69 chr9 122153950 122154152 -20117292 + MIR SINE MIR 19 230 -32 198 379 0 0 chr9 122154273 122154339 -20117105 + L2 LINE L2 3207 3272 0 966 201 29 0 chr9 122156049 122156293 -20115151 + MER33 DNA MER1_type 17 267 -57 21 36 0 0 chr9 122157301 122157329 -20114115 + AT_rich Low_complexity Low_complexity 1 28 0 2371 78 10 0 chr9 122157378 122157672 -20113772 - AluSc SINE Alu -12 297 1 22 35 0 0 chr9 122157973 122158002 -20113442 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 122158670 122158698 -20112746 + AT_rich Low_complexity Low_complexity 1 28 0 2144 328 66 9 chr9 122159037 122159544 -20111900 + L1ME1 LINE L1 190 667 -5729 195 69 0 0 chr9 122159544 122159573 -20111871 + (TATAG)n Simple_repeat Simple_repeat 4 32 0 2144 328 66 9 chr9 122159573 122160570 -20110874 + L1ME1 LINE L1 667 1780 -4616 1079 233 68 6 chr9 122160613 122161099 -20110345 + L1ME1 LINE L1 2822 3337 -2878 240 158 35 35 chr9 122161111 122161168 -20110276 - MER77 LTR ERV1 -467 138 82 2933 242 50 46 chr9 122161206 122163535 -20107909 + L1ME1 LINE L1 3900 6230 -5 263 289 9 18 chr9 122163549 122163663 -20107781 + L1ME4a LINE L1 5942 6054 -67 225 379 0 0 chr9 122163709 122163775 -20107669 - L2 LINE L2 -39 3233 3168 23 33 0 0 chr9 122164097 122164127 -20107317 + AT_rich Low_complexity Low_complexity 1 30 0 217 329 0 0 chr9 122164253 122164326 -20107118 - MIR3 SINE MIR -3 205 133 282 313 52 0 chr9 122164568 122164702 -20106742 - MER117 DNA MER1_type -41 156 16 252 267 57 19 chr9 122164773 122164878 -20106566 + MIR SINE MIR 95 203 -59 453 265 20 60 chr9 122166955 122167106 -20104338 + MIR SINE MIR 42 186 -76 379 240 10 0 chr9 122167217 122167317 -20104127 + Charlie5 DNA MER1_type 5 105 -2507 1004 168 61 0 chr9 122167320 122167516 -20103928 + MER2 DNA MER2_type 1 208 -137 26 30 0 0 chr9 122167536 122167569 -20103875 + AT_rich Low_complexity Low_complexity 1 33 0 1130 191 39 50 chr9 122167601 122167983 -20103461 + Charlie5 DNA MER1_type 2243 2620 0 1906 146 10 10 chr9 122168690 122168985 -20102459 + AluJb SINE Alu 5 299 -13 200 291 13 63 chr9 122169196 122169275 -20102169 - L2 LINE L2 -234 3038 2964 222 310 58 23 chr9 122169606 122169693 -20101751 + MIR3 SINE MIR 4 93 -115 299 218 0 0 chr9 122169697 122169752 -20101692 - L2 LINE L2 -10 3262 3208 207 211 18 35 chr9 122169942 122169999 -20101445 - L2 LINE L2 -1 3312 3257 244 170 21 0 chr9 122170000 122170047 -20101397 + MER3 DNA MER1_type 39 86 -123 * 1155 203 22 16 chr9 122170015 122170326 -20101118 + MER33 DNA MER1_type 7 319 -5 412 255 56 37 chr9 122170590 122170751 -20100693 + MIR3 SINE MIR 34 197 -11 1298 180 45 0 chr9 122170795 122171017 -20100427 + AluSg/x SINE Alu 68 299 -13 198 0 0 0 chr9 122171518 122171540 -20099904 + (TG)n Simple_repeat Simple_repeat 1 22 0 242 314 128 0 chr9 122171865 122171951 -20099493 + MIR3 SINE MIR 85 181 -27 188 196 0 65 chr9 122171956 122172002 -20099442 + MER5B DNA MER1_type 10 52 -126 522 157 17 0 chr9 122172239 122172354 -20099090 - MER33 DNA MER1_type -13 350 234 1034 201 57 4 chr9 122172376 122172656 -20098788 - MER33 DNA MER1_type -36 288 1 514 269 161 13 chr9 122172667 122172816 -20098628 + MER5A DNA MER1_type 13 183 -6 185 300 0 17 chr9 122172820 122172880 -20098564 + L2 LINE L2 2575 2633 -681 396 350 60 70 chr9 122172947 122173344 -20098100 + L2 LINE L2 2871 3263 -9 227 196 0 20 chr9 122173352 122173403 -20098041 + GA-rich Low_complexity Low_complexity 4 53 0 324 331 62 17 chr9 122173527 122173705 -20097739 + MIR SINE MIR 25 210 -52 234 299 64 117 chr9 122174699 122174817 -20096627 - L2 LINE L2 -14 3299 3176 927 191 83 10 chr9 122174817 122175021 -20096423 - MER20 DNA MER1_type 0 219 1 234 299 64 117 chr9 122175021 122175417 -20096027 - L2 LINE L2 -137 3176 2812 198 365 0 11 chr9 122175892 122176004 -20095440 - MIR SINE MIR -69 139 29 233 298 74 60 chr9 122176224 122176439 -20095005 + L2 LINE L2 2837 3054 -218 1917 156 0 0 chr9 122177845 122178127 -20093317 - AluSx SINE Alu -30 282 1 385 308 30 15 chr9 122178127 122178260 -20093184 + L2 LINE L2 3171 3305 -8 1196 83 56 0 chr9 122178336 122178516 -20092928 - L1PA13 LINE L1 0 6163 5974 920 234 75 4 chr9 122178557 122178784 -20092660 + MIR SINE MIR 19 261 -1 203 397 82 14 chr9 122179518 122179664 -20091780 - L2 LINE L2 0 3272 3117 510 279 33 87 chr9 122179791 122180067 -20091377 - MIR SINE MIR 0 262 2 452 321 91 31 chr9 122181971 122182150 -20089294 - L3 LINE CR1 -29 1548 1344 2256 114 0 3 chr9 122182150 122182457 -20088987 - AluSx SINE Alu -6 306 1 452 321 91 31 chr9 122182457 122182564 -20088880 - L3 LINE CR1 -233 1344 1245 1697 215 34 0 chr9 122182698 122183051 -20088393 + MLT1A1 LTR MaLR 1 365 0 819 223 86 37 chr9 122183117 122183386 -20088058 + MLT2C1 LTR ERVL 1 282 -115 220 200 0 0 chr9 122183409 122183449 -20087995 + (TG)n Simple_repeat Simple_repeat 2 41 0 407 200 34 131 chr9 122184218 122184393 -20087051 + MIR SINE MIR 105 262 0 2303 141 36 14 chr9 122184533 122184826 -20086618 - MSTA LTR MaLR 0 428 122 3340 74 22 11 chr9 122184826 122185274 -20086170 + MLT2A2 LTR ERVL 1 453 0 2303 141 36 14 chr9 122185274 122185399 -20086045 - MSTA LTR MaLR -306 122 1 960 308 45 0 chr9 122185482 122185729 -20085715 + MIR SINE MIR 2 259 -3 505 316 16 32 chr9 122186286 122186473 -20084971 - MIR SINE MIR -17 245 62 919 235 38 88 chr9 122186515 122186911 -20084533 - L1ME3A LINE L1 0 6170 5795 846 216 74 13 chr9 122187138 122187369 -20084075 - L1MB1 LINE L1 -6 6162 5918 249 129 113 16 chr9 122188226 122188288 -20083156 - MIR SINE MIR -63 145 78 944 79 0 0 chr9 122188852 122188979 -20082465 - AluY SINE Alu -2 309 183 957 242 27 9 chr9 122189199 122189418 -20082026 - MER58A DNA MER1_type 0 224 2 803 273 74 47 chr9 122189661 122190133 -20081311 - MLT1L LTR MaLR -8 607 123 474 305 26 13 chr9 122190362 122190513 -20080931 - MER5A DNA MER1_type 0 189 37 183 353 40 50 chr9 122190865 122191066 -20080378 + MIR SINE MIR 56 254 -8 243 308 111 8 chr9 122191148 122191265 -20080179 - MIR3 SINE MIR -43 165 37 351 121 0 0 chr9 122191402 122191460 -20079984 + (TC)n Simple_repeat Simple_repeat 1 58 0 249 369 12 0 chr9 122192190 122192274 -20079170 - L2 LINE L2 -37 3235 3151 663 289 88 13 chr9 122192771 122192999 -20078445 + MIR SINE MIR 18 262 0 542 350 47 16 chr9 122193207 122193464 -20077980 + L3 LINE CR1 1214 1478 -99 568 265 47 6 chr9 122193777 122193947 -20077497 + MIR3 SINE MIR 30 206 -2 2544 138 14 9 chr9 122194981 122195422 -20076022 - Tigger2 DNA MER2_type -3 2715 2273 261 165 24 106 chr9 122195399 122195484 -20075960 - Tigger2 DNA MER2_type -2640 78 1 * 464 332 37 37 chr9 122195779 122196023 -20075421 + MIR SINE MIR 3 246 -16 24 32 0 0 chr9 122196360 122196391 -20075053 + AT_rich Low_complexity Low_complexity 1 31 0 851 154 6 29 chr9 122196391 122196566 -20074878 - L1MB8 LINE L1 -12 6166 5996 3101 197 57 9 chr9 122196571 122197616 -20073828 - L1MB8 LINE L1 -588 5596 4497 311 363 7 7 chr9 122197688 122197823 -20073621 + L2 LINE L2 3171 3305 -8 23 33 0 0 chr9 122198388 122198418 -20073026 + AT_rich Low_complexity Low_complexity 1 30 0 6288 111 11 2 chr9 122198426 122200219 -20071225 + L1PA8 LINE L1 4369 6172 0 23 0 0 0 chr9 122200592 122200615 -20070829 + AT_rich Low_complexity Low_complexity 1 23 0 232 365 17 94 chr9 122201401 122201582 -20069862 - MIR3 SINE MIR -14 194 28 194 361 42 25 chr9 122201616 122201735 -20069709 - L2 LINE L2 -15 3257 3137 446 322 28 17 chr9 122202535 122202895 -20068549 + L1MC/D LINE L1 4179 4542 -1604 1351 179 0 0 chr9 122203184 122203402 -20068042 - AluSg/x SINE Alu -10 300 83 23 54 0 0 chr9 122203589 122203626 -20067818 + AT_rich Low_complexity Low_complexity 1 37 0 376 232 75 33 chr9 122203789 122204073 -20067371 + L1MC/D LINE L1 5311 5605 -557 2225 118 0 16 chr9 122204111 122204416 -20067028 + AluSx SINE Alu 1 300 -12 619 258 87 23 chr9 122204632 122204896 -20066548 - L1MB7 LINE L1 -8 6176 5896 787 241 6 6 chr9 122206051 122206221 -20065223 - MER5B DNA MER1_type -7 171 2 333 325 31 26 chr9 122206441 122206632 -20064812 + MER117 DNA MER1_type 1 192 -5 762 192 114 12 chr9 122206872 122207039 -20064405 - MER5A DNA MER1_type -3 186 3 417 308 63 6 chr9 122208488 122208647 -20062797 - MIR SINE MIR -50 212 45 858 311 76 30 chr9 122208675 122208731 -20062713 + LTR33 LTR ERVL 38 90 -431 1653 236 66 29 chr9 122208731 122209218 -20062226 - MLT1D LTR MaLR 0 505 1 858 311 76 30 chr9 122209218 122209621 -20061823 + LTR33 LTR ERVL 90 518 -3 922 311 74 20 chr9 122209955 122210508 -20060936 + L2 LINE L2 2712 3307 -6 776 259 26 53 chr9 122210507 122210773 -20060671 - MIR SINE MIR -1 261 3 * 2418 101 0 0 chr9 122211005 122211311 -20060133 - AluSq SINE Alu -7 306 1 183 250 26 26 chr9 122211790 122211866 -20059578 + L2 LINE L2 2918 2993 -279 180 77 0 0 chr9 122212190 122212216 -20059228 + (TAA)n Simple_repeat Simple_repeat 2 27 0 554 226 14 0 chr9 122212728 122212874 -20058570 + MER103 DNA DNA 8 155 -11 21 0 0 0 chr9 122212946 122212967 -20058477 + AT_rich Low_complexity Low_complexity 1 21 0 363 268 0 10 chr9 122213005 122213102 -20058342 + MIR SINE MIR 118 213 -49 469 270 135 27 chr9 122213171 122213393 -20058051 + MIR SINE MIR 13 258 -4 * 530 319 52 20 chr9 122213391 122213642 -20057802 - MIR SINE MIR -1 261 3 213 363 38 0 chr9 122214188 122214268 -20057176 - MIR SINE MIR -160 102 20 391 340 77 24 chr9 122214717 122214926 -20056518 - MIR SINE MIR -16 246 27 273 219 0 0 chr9 122215173 122215246 -20056198 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 438 337 44 19 chr9 122215619 122215824 -20055620 - L2 LINE L2 -618 2696 2487 285 411 30 5 chr9 122215874 122216071 -20055373 + L3 LINE CR1 1297 1498 -79 829 277 75 5 chr9 122216159 122216372 -20055072 - MIR SINE MIR -1 261 34 255 125 0 0 chr9 122216434 122216474 -20054970 + (CCCCCT)n Simple_repeat Simple_repeat 6 45 0 767 100 0 8 chr9 122216476 122216596 -20054848 + (TTTCC)n Simple_repeat Simple_repeat 4 122 0 1862 150 3 18 chr9 122216596 122216882 -20054562 - AluSx SINE Alu -30 282 1 203 232 161 0 chr9 122217187 122217243 -20054201 + L3 LINE CR1 1512 1576 -1 246 263 40 0 chr9 122218206 122218282 -20053162 - MIR SINE MIR -74 188 110 310 342 118 13 chr9 122218618 122218770 -20052674 - MIR SINE MIR -7 255 88 944 174 40 62 chr9 122219921 122220145 -20051299 + MER20 DNA MER1_type 1 219 0 329 260 153 62 chr9 122220151 122220328 -20051116 + MIR SINE MIR 37 229 -33 1369 214 36 28 chr9 122220331 122220690 -20050754 + MLT1A1 LTR MaLR 4 365 0 867 251 72 63 chr9 122220823 122221186 -20050258 + MLT1H LTR MaLR 183 548 -1 497 216 119 34 chr9 122221475 122221651 -20049793 - MER3 DNA MER1_type 0 209 19 238 274 0 0 chr9 122222015 122222066 -20049378 + MER115 DNA AcHobo 643 693 0 1851 224 42 8 chr9 122222106 122222580 -20048864 - MLT1D LTR MaLR -15 490 1 427 315 37 25 chr9 122222750 122222912 -20048532 - MIR SINE MIR -92 170 7 232 344 117 31 chr9 122222953 122223116 -20048328 - MIR SINE MIR 0 262 86 870 302 67 41 chr9 122223117 122223890 -20047554 - L2 LINE L2 -24 3289 2399 634 259 141 43 chr9 122223905 122224325 -20047119 - L2 LINE L2 -1589 1725 1265 714 177 16 8 chr9 122225001 122225125 -20046319 + AluJb SINE Alu 160 284 -28 2351 159 44 2 chr9 122225161 122225570 -20045874 - MSTB LTR MaLR 0 426 1 230 309 72 10 chr9 122225592 122225689 -20045755 - MIR3 SINE MIR -6 202 100 207 378 104 21 chr9 122226128 122226610 -20044834 + L2 LINE L2 1431 1952 -1362 185 246 15 0 chr9 122226782 122226847 -20044597 + T-rich Low_complexity Low_complexity 1 66 0 185 371 38 6 chr9 122226854 122227013 -20044431 + L2 LINE L2 2149 2312 -1002 2282 125 19 19 chr9 122227082 122227457 -20043987 + THE1C LTR MaLR 1 375 0 330 123 0 0 chr9 122227848 122227905 -20043539 + (TA)n Simple_repeat Simple_repeat 2 58 0 277 288 91 0 chr9 122227943 122228009 -20043435 + L2 LINE L2 3134 3205 -67 185 238 0 0 chr9 122228147 122228189 -20043255 + L2 LINE L2 3175 3216 -56 22 0 0 0 chr9 122228527 122228549 -20042895 + AT_rich Low_complexity Low_complexity 1 22 0 235 358 150 0 chr9 122228972 122229092 -20042352 + MIR SINE MIR 21 158 -104 984 328 99 28 chr9 122229545 122230249 -20041195 - L3 LINE CR1 -154 1423 670 2111 134 0 0 chr9 122230346 122230637 -20040807 - AluSc SINE Alu -18 291 1 183 333 0 0 chr9 122230717 122230762 -20040682 + L2 LINE L2 3268 3312 -1 420 20 0 0 chr9 122231081 122231130 -20040314 + (CA)n Simple_repeat Simple_repeat 2 50 0 25 31 0 0 chr9 122231238 122231270 -20040174 + AT_rich Low_complexity Low_complexity 1 32 0 302 377 0 0 chr9 122231280 122231402 -20040042 - MIR SINE MIR -89 173 52 319 299 0 0 chr9 122232082 122232169 -20039275 - L2 LINE L2 -2 3311 3225 190 345 69 62 chr9 122232201 122232346 -20039098 + MIR3 SINE MIR 35 180 -28 314 374 7 14 chr9 122233083 122233230 -20038214 - MIR SINE MIR -92 170 25 188 306 15 112 chr9 122233236 122233257 -20038187 - L2 LINE L2 0 3313 3292 1994 126 0 13 chr9 122233257 122233583 -20037861 - AluSx SINE Alu 0 312 1 188 306 15 112 chr9 122233583 122233695 -20037749 - L2 LINE L2 -21 3292 3193 297 328 24 32 chr9 122234394 122234519 -20036925 + MIR SINE MIR 25 148 -114 1478 251 40 22 chr9 122234527 122235067 -20036377 + MLT2F LTR ERVL 1 601 -62 329 305 16 16 chr9 122235435 122235563 -20035881 - MLT1H LTR MaLR -375 174 47 22 88 0 0 chr9 122235904 122235961 -20035483 + AT_rich Low_complexity Low_complexity 1 57 0 392 284 78 18 chr9 122236108 122236424 -20035020 - L1MC4a LINE L1 -303 5818 5561 1987 140 140 16 chr9 122236644 122236849 -20034595 - MSTA LTR MaLR -2 426 248 1888 65 3 102 chr9 122236849 122237142 -20034302 - AluSp SINE Alu -49 264 1 1987 140 140 16 chr9 122237142 122237315 -20034129 - MSTA LTR MaLR -180 248 1 1214 254 117 26 chr9 122237466 122237926 -20033518 + MLT1D LTR MaLR 1 502 -3 260 232 74 0 chr9 122238291 122238386 -20033058 - L1MC4a LINE L1 -833 5313 5212 6326 139 50 14 chr9 122238436 122239618 -20031826 + Tigger3b DNA MER2_type 2 1225 -6 5312 175 32 50 chr9 122239864 122241160 -20030284 - L1MA5 LINE L1 -8 6292 5032 2357 176 50 7 chr9 122241160 122241598 -20029846 - MSTB2 LTR MaLR 0 457 1 5312 175 32 50 chr9 122241598 122242486 -20028958 - L1MA5 LINE L1 -1268 5032 4129 851 175 0 0 chr9 122242744 122242881 -20028563 - AluJb SINE Alu -175 137 1 3588 275 58 45 chr9 122243073 122244181 -20027263 + L1ME LINE L1 110 1202 -4878 1245 146 5 0 chr9 122244181 122244394 -20027050 + L1MA1 LINE L1 6089 6302 0 3588 275 58 45 chr9 122244394 122246810 -20024634 + L1ME LINE L1 1202 3585 -2495 7447 37 0 0 chr9 122246810 122248176 -20023268 + L1PA4 LINE L1 4790 6155 0 3588 275 58 45 chr9 122248176 122248236 -20023208 + L1ME LINE L1 3585 3643 -2437 1913 161 0 0 chr9 122248236 122248527 -20022917 - AluSx SINE Alu -21 291 1 3588 275 58 45 chr9 122248527 122248543 -20022901 + L1ME LINE L1 3643 3657 -2423 3230 198 47 31 chr9 122248543 122249316 -20022128 - LTR1 LTR ERV1 0 785 1 3588 275 58 45 chr9 122249316 122249871 -20021573 + L1ME LINE L1 3657 4238 -1842 4743 161 40 2 chr9 122249896 122250749 -20020695 + L1MC1 LINE L1 5444 6328 -5 232 145 66 40 chr9 122250767 122250843 -20020601 + L1ME3A LINE L1 6090 6167 -3 * 597 159 50 33 chr9 122250834 122251016 -20020428 + L1ME LINE L1 4250 4434 -1646 2121 210 63 107 chr9 122251017 122251276 -20020168 + L1MB8 LINE L1 4693 4962 -1150 2428 92 0 0 chr9 122251276 122251580 -20019864 + AluY SINE Alu 1 304 -7 2121 210 63 107 chr9 122251580 122252318 -20019126 + L1MB8 LINE L1 4962 5731 -381 313 70 0 0 chr9 122252318 122252361 -20019083 - MLT1A2 LTR MaLR -53 321 279 2121 210 63 107 chr9 122252361 122252410 -20019034 + L1MB8 LINE L1 5731 5781 -331 1822 139 0 46 chr9 122252410 122252713 -20018731 + AluSx SINE Alu 1 289 -23 2121 210 63 107 chr9 122252713 122253110 -20018334 + L1MB8 LINE L1 5781 6112 0 778 325 117 33 chr9 122253379 122253582 -20017862 - L3 LINE CR1 -165 1412 1227 192 40 0 0 chr9 122253582 122253607 -20017837 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 778 325 117 33 chr9 122253607 122253916 -20017528 - L3 LINE CR1 -350 1227 857 543 264 0 0 chr9 122254855 122254980 -20016464 + MLT1F1 LTR MaLR 2 126 -441 415 192 71 0 chr9 122254980 122255079 -20016365 + L1MD3 LINE L1 7405 7510 -485 4140 207 50 23 chr9 122255079 122256090 -20015354 + MER45B DNA AcHobo 1 1039 -1 1325 213 40 62 chr9 122256114 122256564 -20014880 + L1MD3 LINE L1 7540 7979 -16 235 282 43 60 chr9 122256588 122256705 -20014739 - MIR SINE MIR -24 238 124 444 302 8 0 chr9 122257246 122257372 -20014072 - MIR SINE MIR -58 204 78 299 98 12 37 chr9 122257451 122257533 -20013911 + (TA)n Simple_repeat Simple_repeat 1 80 0 1532 184 11 26 chr9 122257535 122257882 -20013562 - L1MA9 LINE L1 -42 6270 5929 294 306 57 8 chr9 122257934 122258058 -20013386 - MIR3 SINE MIR -75 133 4 775 254 16 5 chr9 122258200 122258385 -20013059 + MER5A DNA MER1_type 1 187 -2 1424 214 49 38 chr9 122258979 122259349 -20012095 - MLT1A2 LTR MaLR 0 374 1 1858 152 23 13 chr9 122259769 122260078 -20011366 + AluSx SINE Alu 1 312 0 622 288 96 29 chr9 122260689 122261261 -20010183 + L1MCc LINE L1 1261 2084 -4991 2525 165 21 2 chr9 122261465 122261883 -20009561 - MSTB LTR MaLR 0 426 1 315 317 25 25 chr9 122262697 122262858 -20008586 + MER117 DNA MER1_type 34 194 -3 208 375 16 0 chr9 122262892 122262956 -20008488 - L2 LINE L2 -94 3178 3114 2316 86 7 7 chr9 122263812 122264113 -20007331 + AluSg SINE Alu 1 301 -9 192 272 74 37 chr9 122266844 122266925 -20004519 - L2 LINE L2 -5 3308 3225 252 284 85 104 chr9 122267048 122267365 -20004079 - L2 LINE L2 -344 2970 2660 291 320 33 8 chr9 122267453 122267575 -20003869 - MIR SINE MIR -14 248 124 747 59 0 0 chr9 122267607 122267708 -20003736 + (TCCA)n Simple_repeat Simple_repeat 1 101 0 387 348 70 13 chr9 122267719 122267877 -20003567 - L2 LINE L2 0 3272 3106 199 326 35 58 chr9 122267950 122268036 -20003408 - MIR SINE MIR -152 110 27 1077 82 0 0 chr9 122268585 122268756 -20002688 + (CA)n Simple_repeat Simple_repeat 2 172 0 2142 133 8 5 chr9 122268947 122269316 -20002128 - L1MA4 LINE L1 -1 6299 5930 182 227 0 30 chr9 122269979 122270045 -20001399 + (TATG)n Simple_repeat Simple_repeat 4 67 0 213 214 0 0 chr9 122270148 122270190 -20001254 + GA-rich Low_complexity Low_complexity 1 42 0 224 341 22 0 chr9 122270476 122270567 -20000877 + MIR SINE MIR 51 143 -119 292 363 30 0 chr9 122271038 122271173 -20000271 - MIR3 SINE MIR -23 185 47 263 295 148 0 chr9 122271290 122271412 -20000032 + MIR3 SINE MIR 61 200 -8 487 351 69 36 chr9 122271825 122272442 -19999002 + L2 LINE L2 2671 3302 -11 487 174 72 159 chr9 122272801 122272996 -19998448 + MER97a DNA MER1_type? 2 179 -715 647 293 19 9 chr9 122273253 122273465 -19997979 + MIR SINE MIR 1 214 -48 23443 110 6 11 chr9 122273846 122277935 -19993509 + L1PA7 LINE L1 748 4837 -1624 6775 60 9 2 chr9 122277935 122279181 -19992263 + L1PA7 LINE L1 5197 6467 -2 437 338 84 21 chr9 122279522 122279759 -19991685 - MIR SINE MIR -10 252 1 186 250 97 14 chr9 122279781 122279853 -19991591 - MIR SINE MIR -60 202 125 1739 59 14 0 chr9 122280019 122280241 -19991203 - L1PA7 LINE L1 -3 6151 5927 248 256 23 35 chr9 122280745 122280831 -19990613 - MIR3 SINE MIR -12 196 112 348 290 65 0 chr9 122280964 122281071 -19990373 - L2 LINE L2 0 3313 3200 184 310 52 0 chr9 122281073 122281131 -19990313 + L2 LINE L2 3002 3062 -251 334 299 103 8 chr9 122281753 122281870 -19989574 - L3b LINE CR1 -158 1425 1298 289 298 249 15 chr9 122281891 122282096 -19989348 + MIR SINE MIR 4 256 -6 310 337 131 56 chr9 122282125 122282759 -19988685 - L2 LINE L2 -2 3270 2605 307 318 8 16 chr9 122282792 122282921 -19988523 + L2 LINE L2 2776 2903 -411 386 79 0 16 chr9 122282922 122282985 -19988459 - MADE1 DNA Mariner 0 80 19 273 29 0 0 chr9 122283031 122283066 -19988378 + MADE1 DNA Mariner 46 80 0 512 324 190 12 chr9 122283091 122283418 -19988026 + L2 LINE L2 2927 3311 -2 427 271 60 8 chr9 122284520 122284653 -19986791 + MIR3 SINE MIR 65 204 -4 264 271 47 24 chr9 122284792 122284877 -19986567 - L2 LINE L2 -5 3308 3222 296 264 14 104 chr9 122284936 122285080 -19986364 - L2 LINE L2 -227 3045 2915 191 411 0 0 chr9 122285306 122285379 -19986065 - MIR SINE MIR -111 151 79 339 308 76 50 chr9 122285458 122285656 -19985788 + L2 LINE L2 2852 3054 -218 205 387 54 0 chr9 122285709 122285802 -19985642 - L2 LINE L2 -32 3240 3143 1689 221 40 6 chr9 122285804 122286157 -19985287 + MLT1A1 LTR MaLR 1 365 0 1500 190 46 32 chr9 122286189 122286473 -19984971 + AluJo SINE Alu 1 288 -24 204 67 0 0 chr9 122287105 122287135 -19984309 + (TA)n Simple_repeat Simple_repeat 2 31 0 355 272 0 22 chr9 122287137 122287229 -19984215 + L1MC4 LINE L1 6614 6703 -1339 2073 114 21 0 chr9 122287238 122287528 -19983916 - AluSx SINE Alu -16 296 1 28 0 0 0 chr9 122287586 122287614 -19983830 + AT_rich Low_complexity Low_complexity 1 28 0 246 245 0 0 chr9 122287649 122287698 -19983746 - LTR67 LTR ERVL -476 81 33 278 384 13 26 chr9 122288272 122288423 -19983021 + MIR3 SINE MIR 13 161 -47 1041 210 11 0 chr9 122288511 122288692 -19982752 - MER5A DNA MER1_type -6 183 1 2162 104 7 20 chr9 122288774 122289073 -19982371 + AluSx SINE Alu 1 295 -17 6883 44 0 5 chr9 122289077 122290198 -19981246 + L1PA5 LINE L1 5018 6132 -22 936 123 0 0 chr9 122290201 122290347 -19981097 + (TA)n Simple_repeat Simple_repeat 1 146 0 348 205 211 6 chr9 122290559 122290720 -19980724 + MLT1K LTR MaLR 393 586 -2 441 0 0 0 chr9 122290762 122290811 -19980633 + (A)n Simple_repeat Simple_repeat 1 49 0 1621 49 10 0 chr9 122290879 122291084 -19980360 + L1PA5 LINE L1 5948 6154 0 433 303 21 16 chr9 122291171 122291359 -19980085 - MIR SINE MIR 0 262 74 201 108 0 0 chr9 122291372 122291409 -19980035 + (GA)n Simple_repeat Simple_repeat 1 37 0 209 370 24 88 chr9 122292481 122292933 -19978511 + L2 LINE L2 2849 3271 -1 26 30 0 0 chr9 122293229 122293262 -19978182 + AT_rich Low_complexity Low_complexity 1 33 0 218 346 13 26 chr9 122294350 122294428 -19977016 - L2 LINE L2 -40 3273 3197 940 218 54 61 chr9 122295133 122295413 -19976031 + MLT1H LTR MaLR 272 549 0 193 319 234 11 chr9 122295443 122295537 -19975907 - L2 LINE L2 -9 3263 3149 182 324 20 29 chr9 122296703 122296805 -19974639 + L2 LINE L2 3019 3119 -153 669 280 41 18 chr9 122296853 122297071 -19974373 + MIR SINE MIR 12 234 -28 285 250 0 0 chr9 122297373 122297433 -19974011 + MIR3 SINE MIR 105 164 -44 408 270 71 51 chr9 122297531 122297727 -19973717 - MIR SINE MIR -56 206 7 282 294 24 12 chr9 122298360 122298445 -19972999 - L3 LINE CR1 -6 1571 1486 577 301 48 40 chr9 122299314 122299563 -19971881 - MIR SINE MIR -2 260 10 542 293 24 30 chr9 122300547 122300714 -19970730 + MIR3 SINE MIR 38 203 -5 582 303 17 34 chr9 122301340 122301515 -19969929 - MIR3 SINE MIR -28 180 9 635 185 103 95 chr9 122301904 122302136 -19969308 + MER113 DNA MER1_type? 287 520 -1 517 256 159 0 chr9 122302237 122302413 -19969031 + MIR SINE MIR 2 205 -57 264 321 172 19 chr9 122302424 122302639 -19968805 - MIR SINE MIR -10 252 5 274 191 0 131 chr9 122302755 122302839 -19968605 - MLT1H LTR MaLR 0 549 477 784 271 49 52 chr9 122303889 122304217 -19967227 + MLT1H LTR MaLR 40 366 -183 335 337 39 11 chr9 122304421 122304599 -19966845 - MIR SINE MIR -31 231 49 192 336 84 15 chr9 122305208 122305339 -19966105 - MIR SINE MIR -70 192 53 261 323 50 71 chr9 122305537 122305735 -19965709 - MIR3 SINE MIR -10 198 5 445 284 94 138 chr9 122305990 122307507 -19963937 - L2 LINE L2 -5 3267 1851 2004 75 15 11 chr9 122307507 122307773 -19963671 + L1PA7 LINE L1 5888 6154 0 445 284 94 138 chr9 122307773 122308146 -19963298 - L2 LINE L2 -1421 1851 1463 224 278 56 14 chr9 122308783 122308855 -19962589 + MIR3 SINE MIR 87 161 -47 299 300 18 36 chr9 122308913 122309023 -19962421 + MER103 DNA DNA 2 109 -57 219 353 113 7 chr9 122309377 122309527 -19961917 - L3 LINE CR1 -15 1562 1397 390 305 13 45 chr9 122309867 122310021 -19961423 + MIR3 SINE MIR 54 202 -6 335 353 9 0 chr9 122310215 122310331 -19961113 - L2 LINE L2 -2 3311 3195 678 299 79 8 chr9 122310605 122310859 -19960585 - MLT1J LTR MaLR -222 289 18 412 176 0 0 chr9 122310896 122310964 -19960480 - MLT1I LTR MaLR 0 409 342 506 315 5 49 chr9 122311512 122311696 -19959748 - MIR SINE MIR -80 182 7 195 319 138 38 chr9 122311799 122311959 -19959485 - L2 LINE L2 -173 3099 2924 783 299 133 28 chr9 122312504 122312999 -19958445 + L2 LINE L2 2776 3313 0 185 83 28 0 chr9 122313060 122313096 -19958348 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 329 299 48 48 chr9 122313814 122313981 -19957463 + MIR SINE MIR 20 186 -76 276 280 56 53 chr9 122314954 122315164 -19956280 + MIR SINE MIR 3 201 -7 181 236 27 0 chr9 122315164 122315274 -19956170 + (CAATT)n Simple_repeat Simple_repeat 1 113 0 229 156 0 44 chr9 122315545 122315590 -19955854 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 481 261 119 23 chr9 122316190 122316366 -19955078 - MIR SINE MIR -22 240 48 543 185 110 0 chr9 122316956 122317102 -19954342 + L1MA7 LINE L1 5937 6098 -193 532 123 85 9 chr9 122317096 122317202 -19954242 + L1MA9 LINE L1 6161 6274 -38 * 234 272 33 43 chr9 122317271 122317363 -19954081 - MER5A DNA MER1_type -2 187 97 335 296 140 41 chr9 122317366 122317609 -19953835 - L2 LINE L2 0 3313 3047 261 146 0 0 chr9 122317643 122317691 -19953753 - L1P4 LINE L1 -536 5632 5585 1343 107 24 39 chr9 122317692 122317829 -19953615 + L1PA13 LINE L1 5957 6092 -71 2457 101 58 12 chr9 122317829 122318175 -19953269 + THE1B LTR MaLR 3 364 0 1343 107 24 39 chr9 122318175 122318243 -19953201 + L1PA13 LINE L1 6092 6159 -4 251 319 53 35 chr9 122318583 122318696 -19952748 - MIR SINE MIR -98 164 50 197 119 0 203 chr9 122319258 122319317 -19952127 + L2 LINE L2 3265 3311 -2 721 252 87 21 chr9 122319319 122319561 -19951883 - MIR SINE MIR 0 262 5 1716 240 154 17 chr9 122319909 122320389 -19951055 + MLT1G LTR MaLR 45 590 0 499 295 63 31 chr9 122320410 122320664 -19950780 + MIR SINE MIR 1 262 0 254 346 0 4 chr9 122320680 122320772 -19950672 - MIR SINE MIR -62 146 73 1304 208 26 42 chr9 122321326 122321440 -19950004 + AluJo SINE Alu 4 118 -194 213 94 0 0 chr9 122321440 122321472 -19949972 + (CA)n Simple_repeat Simple_repeat 2 33 0 1304 208 26 42 chr9 122321472 122321670 -19949774 + AluJo SINE Alu 118 311 -1 281 250 50 12 chr9 122321686 122321766 -19949678 - MIR3 SINE MIR -7 201 119 188 83 0 28 chr9 122321903 122321939 -19949505 + (TTTTTG)n Simple_repeat Simple_repeat 5 39 0 483 286 23 51 chr9 122322369 122322544 -19948900 + MIR SINE MIR 20 189 -73 2320 92 3 0 chr9 122322651 122322946 -19948498 + AluSp SINE Alu 1 296 -17 187 327 0 0 chr9 122323493 122323548 -19947896 + MIR3 SINE MIR 147 201 -7 2260 120 158 13 chr9 122323998 122324372 -19947072 - MSTA LTR MaLR 0 428 1 755 258 38 6 chr9 122324698 122324907 -19946537 + MIR SINE MIR 33 246 -16 180 111 0 0 chr9 122324916 122324943 -19946501 + (CAT)n Simple_repeat Simple_repeat 1 27 0 482 246 71 112 chr9 122325097 122325321 -19946123 - MER58C DNA MER1_type 0 215 1 316 318 124 0 chr9 122325679 122325808 -19945636 + L3 LINE CR1 1416 1560 -17 189 316 13 26 chr9 122326122 122326198 -19945246 + L2 LINE L2 3231 3305 -8 867 175 65 0 chr9 122326429 122326629 -19944815 - AluJb SINE Alu 0 355 146 2219 126 0 0 chr9 122326648 122326998 -19944446 - AluSx SINE Alu 0 352 3 232 333 0 0 chr9 122327004 122327073 -19944371 - MIR SINE MIR -90 172 104 827 191 0 0 chr9 122327085 122327216 -19944228 - FLAM_A SINE Alu -2 131 1 527 287 25 0 chr9 122328130 122328252 -19943192 + MIR SINE MIR 26 150 -58 817 292 39 56 chr9 122328673 122329213 -19942231 - L1ME LINE L1 -395 5726 5192 571 256 36 7 chr9 122329433 122329570 -19941874 + L2 LINE L2 3121 3261 -11 615 307 148 15 chr9 122329886 122330456 -19940988 + L2 LINE L2 2667 3309 -4 371 246 104 38 chr9 122330816 122330981 -19940463 - MIR SINE MIR -62 146 17 302 289 0 35 chr9 122332030 122332144 -19939300 + CT-rich Low_complexity Low_complexity 3 112 0 7961 37 0 2 chr9 122332225 122333170 -19938274 + L1PA5 LINE L1 5207 6150 -4 702 149 0 0 chr9 122333315 122333449 -19937995 + (TG)n Simple_repeat Simple_repeat 1 134 0 249 268 0 0 chr9 122333515 122333571 -19937873 - L2 LINE L2 0 3313 3258 690 63 0 21 chr9 122333808 122333903 -19937541 - MER74A LTR ERVL -465 93 1 227 100 0 25 chr9 122334047 122334058 -19937386 + (GA)n Simple_repeat Simple_repeat 2 12 -28 2174 128 7 0 chr9 122334058 122334364 -19937080 + AluSx SINE Alu 1 308 -4 227 100 0 25 chr9 122334364 122334392 -19937052 + (GA)n Simple_repeat Simple_repeat 12 40 0 25 0 0 0 chr9 122334696 122334721 -19936723 + AT_rich Low_complexity Low_complexity 1 25 0 249 309 151 13 chr9 122335091 122335243 -19936201 + MIR SINE MIR 89 261 -1 276 376 63 16 chr9 122335299 122335488 -19935956 + L3 LINE CR1 1362 1559 -18 2234 107 3 0 chr9 122335566 122335866 -19935578 + AluSx SINE Alu 1 301 -11 543 331 135 46 chr9 122336371 122336891 -19934553 - L3 LINE CR1 -8 1569 1004 470 243 243 0 chr9 122336929 122337118 -19934326 - MIR SINE MIR -26 236 2 548 288 86 60 chr9 122337245 122337415 -19934029 - L3 LINE CR1 -656 921 738 2365 93 0 7 chr9 122337415 122337716 -19933728 + AluY SINE Alu 1 299 -12 548 288 86 60 chr9 122337716 122337847 -19933597 - L3 LINE CR1 -839 738 612 301 308 113 31 chr9 122338074 122338233 -19933211 - L3 LINE CR1 -1071 506 335 399 358 40 10 chr9 122338327 122338483 -19932961 - MIR3 SINE MIR -44 164 6 1596 98 0 14 chr9 122339015 122339229 -19932215 + AluSc SINE Alu 78 288 -21 327 49 0 0 chr9 122339235 122339276 -19932168 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1857 156 0 3 chr9 122339433 122339739 -19931705 - AluSx SINE Alu 0 307 3 524 312 0 29 chr9 122340068 122340241 -19931203 - MIR SINE MIR -45 217 50 196 333 72 51 chr9 122340846 122341122 -19930322 + L2 LINE L2 2565 2846 -468 1178 79 0 0 chr9 122341136 122341288 -19930156 - L1PA10 LINE L1 -234 5934 5783 * 1447 101 26 31 chr9 122341281 122341529 -19929915 + L1PA10 LINE L1 5922 6168 0 1690 165 36 7 chr9 122341555 122341864 -19929580 - MER96B DNA MER1_type? -4 413 96 886 28 0 0 chr9 122342090 122342196 -19929248 - AluY SINE Alu -3 308 203 248 220 0 0 chr9 122342356 122342406 -19929038 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 922 163 26 32 chr9 122342428 122342618 -19928826 - MER53 DNA DNA 0 189 1 472 357 38 58 chr9 122342633 122343326 -19928118 - L2 LINE L2 -33 3239 2571 523 247 82 24 chr9 122344216 122344386 -19927058 + MIR SINE MIR 35 214 -48 301 310 127 25 chr9 122344402 122344560 -19926884 - MIR SINE MIR -41 221 48 451 353 34 17 chr9 122344682 122344920 -19926524 + MIR SINE MIR 3 244 -18 216 158 0 0 chr9 122344938 122344976 -19926468 + CT-rich Low_complexity Low_complexity 2 39 0 226 311 143 19 chr9 122346728 122346889 -19924555 - L2 LINE L2 -7 3306 3126 284 271 45 73 chr9 122346924 122347101 -19924343 - L2 LINE L2 -254 3018 2847 871 310 8 4 chr9 122347103 122347348 -19924096 + MIR SINE MIR 11 256 -6 1925 160 0 7 chr9 122347487 122347793 -19923651 + AluJo SINE Alu 1 304 -8 400 270 148 16 chr9 122348131 122348320 -19923124 - MIR SINE MIR -15 247 34 501 353 19 23 chr9 122349619 122349880 -19921564 - MIR SINE MIR 0 262 3 218 269 0 60 chr9 122350409 122350476 -19920968 - MIR SINE MIR -114 94 32 205 294 8 109 chr9 122350958 122351006 -19920438 - L3 LINE CR1 -35 1542 1491 2108 112 0 17 chr9 122351006 122351301 -19920143 + AluSc SINE Alu 1 290 -19 205 294 8 109 chr9 122351301 122351371 -19920073 - L3 LINE CR1 -86 1491 1436 296 253 97 71 chr9 122351376 122352146 -19919298 - L1M4 LINE L1 -2682 3464 2675 392 143 16 16 chr9 122352288 122352351 -19919093 + MER81 DNA DNA 52 114 0 342 200 27 0 chr9 122352419 122352494 -19918950 - L1MB8 LINE L1 -27 6151 6075 1189 208 24 8 chr9 122352505 122352755 -19918689 + L1MB8 LINE L1 5784 6037 -141 7357 66 0 0 chr9 122352810 122354095 -19917349 - L1PA7 LINE L1 -6 6148 4863 6279 89 9 0 chr9 122354095 122354946 -19916498 + L1PA7 LINE L1 4004 4862 -1284 31 44 0 0 chr9 122354969 122355014 -19916430 + AT_rich Low_complexity Low_complexity 1 45 0 761 269 90 62 chr9 122355689 122356124 -19915320 - HAL1b LINE L1 -723 625 179 186 43 0 0 chr9 122356145 122356168 -19915276 + (TG)n Simple_repeat Simple_repeat 2 24 0 2336 213 63 10 chr9 122358669 122359163 -19912281 + MLT2B1 LTR ERVL 1 520 0 237 33 0 0 chr9 122359675 122359705 -19911739 + (TG)n Simple_repeat Simple_repeat 1 30 0 237 33 0 0 chr9 122359704 122359734 -19911710 + (GA)n Simple_repeat Simple_repeat 1 30 0 335 266 173 14 chr9 122359924 122360072 -19911372 - MIR SINE MIR -63 145 1 184 297 0 68 chr9 122361041 122361115 -19910329 + MIR SINE MIR 85 153 -109 442 182 0 11 chr9 122361363 122361451 -19909993 - Charlie4a DNA MER1_type -8 500 414 1293 179 45 57 chr9 122361456 122361808 -19909636 - LTR37A LTR ERV1 -2 424 77 1166 275 50 10 chr9 122361932 122362328 -19909116 - Charlie4a DNA MER1_type -94 414 3 275 263 38 38 chr9 122363411 122363491 -19907953 - MIR SINE MIR -155 107 28 594 291 113 44 chr9 122363731 122364120 -19907324 - L2 LINE L2 -94 3219 2804 487 281 115 38 chr9 122364131 122364336 -19907108 - L2 LINE L2 0 3272 3045 1901 193 97 23 chr9 122364336 122364767 -19906677 + MLT1C LTR MaLR 5 467 0 487 281 115 38 chr9 122364767 122364796 -19906648 - L2 LINE L2 -227 3045 3020 235 171 23 136 chr9 122364972 122365060 -19906384 + Charlie8 DNA MER1_type 201 278 -2139 235 185 37 0 chr9 122365065 122365119 -19906325 + Charlie8 DNA MER1_type 2344 2399 -18 528 300 60 28 chr9 122365637 122365854 -19905590 + MIR SINE MIR 38 259 -3 1282 118 0 0 chr9 122365864 122366034 -19905410 - AluSg/x SINE Alu -13 299 130 2821 29 0 0 chr9 122366037 122366348 -19905096 - AluY SINE Alu 0 311 1 198 222 0 0 chr9 122366356 122366410 -19905034 + (TTA)n Simple_repeat Simple_repeat 1 54 0 210 325 26 0 chr9 122367105 122367182 -19904262 + L2 LINE L2 2691 2769 -545 187 329 49 0 chr9 122367281 122367363 -19904081 + L2 LINE L2 2394 2479 -835 473 323 148 13 chr9 122367680 122367803 -19903641 - MIR SINE MIR 0 262 157 697 269 122 70 chr9 122367803 122368328 -19903116 + MLT1H1 LTR MaLR 1 552 -3 473 323 148 13 chr9 122368328 122368433 -19903011 - MIR SINE MIR -105 157 3 537 321 19 10 chr9 122369127 122369336 -19902108 - MIR SINE MIR -1 261 51 1198 142 0 0 chr9 122369444 122369620 -19901824 + AluSq SINE Alu 135 310 -3 228 325 85 32 chr9 122369739 122369927 -19901517 - MIR SINE MIR 0 262 65 2852 7 0 0 chr9 122370149 122370454 -19900990 + AluYa5 SINE Alu 1 305 -6 425 221 131 8 chr9 122370454 122370576 -19900868 - MER96 DNA MER1_type? -38 137 1 322 249 143 102 chr9 122370719 122370984 -19900460 - L2 LINE L2 -1 3271 2996 189 74 0 0 chr9 122371392 122371419 -19900025 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1727 244 37 20 chr9 122371419 122371878 -19899566 - MLT1C LTR MaLR 0 467 1 256 298 60 51 chr9 122372866 122373081 -19898363 + L2 LINE L2 2896 3112 -160 369 202 12 12 chr9 122373182 122373266 -19898178 + MIR3 SINE MIR 89 172 -36 202 224 0 0 chr9 122373390 122373439 -19898005 + (TTA)n Simple_repeat Simple_repeat 2 50 0 871 255 69 13 chr9 122373464 122373695 -19897749 - MIR SINE MIR -6 256 13 463 350 25 0 chr9 122374377 122374537 -19896907 - MIR3 SINE MIR -15 193 30 301 257 20 40 chr9 122374581 122374682 -19896762 - MIR3 SINE MIR -29 179 81 * 318 292 143 39 chr9 122374680 122374834 -19896610 + L2 LINE L2 3100 3269 -3 282 180 0 0 chr9 122374844 122374905 -19896539 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 367 326 58 11 chr9 122375156 122375344 -19896100 - MIR SINE MIR -55 207 5 243 185 37 86 chr9 122375688 122375769 -19895675 - L2 LINE L2 -5 3267 3191 234 128 0 0 chr9 122375820 122375859 -19895585 + (TTA)n Simple_repeat Simple_repeat 1 39 0 327 104 0 0 chr9 122375926 122375974 -19895470 + (ATG)n Simple_repeat Simple_repeat 1 48 0 541 175 108 8 chr9 122375982 122376102 -19895342 + MLT1C LTR MaLR 7 138 -329 477 178 0 116 chr9 122376214 122376343 -19895101 + L1MB8 LINE L1 6064 6177 -1 1043 254 18 0 chr9 122376747 122376964 -19894480 - MER58A DNA MER1_type 0 224 4 201 344 47 0 chr9 122376999 122377063 -19894381 + MIR SINE MIR 40 106 -102 1662 111 0 0 chr9 122377239 122377474 -19893970 - L1P LINE L1 -1200 4946 4712 207 250 0 0 chr9 122377519 122377567 -19893877 + CT-rich Low_complexity Low_complexity 1 48 0 6433 77 17 2 chr9 122377577 122379125 -19892319 - L1PA8A LINE L1 0 6131 4553 2206 168 34 11 chr9 122379380 122379737 -19891707 + MLT1A1 LTR MaLR 1 365 0 331 222 53 70 chr9 122379825 122379988 -19891456 + MIR SINE MIR 13 164 -62 222 208 0 0 chr9 122380584 122380632 -19890812 + GA-rich Low_complexity Low_complexity 1 48 0 730 169 26 16 chr9 122380723 122381168 -19890276 + CT-rich Low_complexity Low_complexity 1 449 0 296 77 0 0 chr9 122381170 122381209 -19890235 + (TTTCC)n Simple_repeat Simple_repeat 5 43 0 666 171 11 22 chr9 122381210 122381391 -19890053 + CT-rich Low_complexity Low_complexity 2 180 0 262 250 206 29 chr9 122381611 122381747 -19889697 - MER69A DNA AcHobo 0 177 18 767 259 135 19 chr9 122382760 122383019 -19888425 - LTR16C LTR ERVL -2 489 201 222 278 19 56 chr9 122383177 122383285 -19888159 + MIR SINE MIR 159 262 0 2382 236 19 2 chr9 122383797 122384339 -19887105 - L1ME1 LINE L1 -5 6161 5611 603 157 50 25 chr9 122384339 122384460 -19886984 + MLT1B LTR MaLR 1 124 -266 * 842 150 20 48 chr9 122384449 122384596 -19886848 + MLT1B LTR MaLR 248 390 0 1278 231 60 4 chr9 122384598 122385133 -19886311 - L1ME1 LINE L1 -553 5613 5047 599 309 102 18 chr9 122385462 122385737 -19885707 - L2 LINE L2 -467 2847 2550 300 212 153 51 chr9 122386074 122386211 -19885233 - MIR SINE MIR -1 261 111 225 191 21 21 chr9 122386828 122386875 -19884569 + MIR SINE MIR 27 73 -135 521 317 61 63 chr9 122386944 122387214 -19884230 - MLT1H LTR MaLR -185 364 94 2038 242 80 37 chr9 122387214 122387780 -19883664 - MLT1E LTR MaLR -3 590 1 521 317 61 63 chr9 122387780 122387872 -19883572 - MLT1H LTR MaLR -455 94 3 268 241 0 0 chr9 122388515 122388569 -19882875 + MIR SINE MIR 98 151 -57 220 242 0 16 chr9 122388779 122388841 -19882603 + MIR SINE MIR 202 262 0 371 288 34 38 chr9 122389141 122389305 -19882139 - MIR SINE MIR -63 145 39 271 296 157 0 chr9 122389470 122389578 -19881866 + L2 LINE L2 3148 3272 0 288 266 128 0 chr9 122389711 122389805 -19881639 - L2 LINE L2 -28 3244 3139 6408 92 7 7 chr9 122390588 122391652 -19879792 - L1PA13 LINE L1 -2 6161 5131 4433 175 9 14 chr9 122391652 122392522 -19878922 + L1PA13 LINE L1 4272 5137 -1009 258 32 0 0 chr9 122392533 122392564 -19878880 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 43821 30 22 1 chr9 122392564 122398579 -19872865 - L1PA2 LINE L1 -11 6144 4 523 302 44 63 chr9 122398825 122399077 -19872367 + L2 LINE L2 1874 2120 -1194 916 295 121 45 chr9 122399084 122399577 -19871867 + L2 LINE L2 2353 2912 -401 2539 221 15 22 chr9 122399577 122400119 -19871325 - MLT1F LTR MaLR -4 538 1 916 295 121 45 chr9 122400119 122400303 -19871141 + L2 LINE L2 2912 3081 -232 1270 155 13 30 chr9 122400303 122400535 -19870909 + L1MA9 LINE L1 6011 6238 -74 3244 142 28 37 chr9 122400712 122401310 -19870134 + L1MA9 LINE L1 5692 6284 -28 352 113 65 16 chr9 122401330 122401392 -19870052 + L1MA9 LINE L1 6247 6311 -1 418 325 9 0 chr9 122401455 122401569 -19869875 + L2 LINE L2 3199 3313 0 209 261 17 51 chr9 122402143 122402319 -19869125 + (CAGAGA)n Simple_repeat Simple_repeat 3 172 0 302 219 31 16 chr9 122403375 122403439 -19868005 - MER5B DNA MER1_type -6 172 108 1066 281 54 11 chr9 122403441 122403793 -19867651 + L1ME3A LINE L1 5594 5960 -202 1693 171 3 21 chr9 122404053 122404340 -19867104 + AluSx SINE Alu 12 293 -19 693 161 65 97 chr9 122404342 122404559 -19866885 + L1ME3A LINE L1 5956 6165 -5 365 263 29 51 chr9 122404560 122404697 -19866747 - MER5B DNA MER1_type -43 135 2 421 314 58 35 chr9 122404701 122404927 -19866517 + MIR SINE MIR 31 261 -1 260 222 155 7 chr9 122405659 122405781 -19865663 + MIR SINE MIR 15 148 -63 353 314 74 22 chr9 122406316 122406545 -19864899 - MIR SINE MIR -20 242 2 475 321 80 60 chr9 122406709 122407158 -19864286 - L2 LINE L2 -4 3309 2852 708 270 144 66 chr9 122407161 122407710 -19863734 + MLT1G1 LTR MaLR 4 595 0 1553 207 69 0 chr9 122407721 122408054 -19863390 - MER89 LTR ERV1 -7 552 197 464 154 0 66 chr9 122408031 122408072 -19863372 - MER89 LTR ERV1 -474 85 52 * 2261 135 33 33 chr9 122408072 122408436 -19863008 + THE1B LTR MaLR 1 364 0 464 154 0 66 chr9 122408436 122408485 -19862959 - MER89 LTR ERV1 -507 52 1 792 308 58 59 chr9 122408850 122409483 -19861961 - L2 LINE L2 0 3313 2688 1710 174 7 7 chr9 122409685 122409979 -19861465 + AluJo SINE Alu 1 294 -18 625 289 123 0 chr9 122410039 122410267 -19861177 - MIR SINE MIR -4 258 3 225 159 0 0 chr9 122410856 122410900 -19860544 + T-rich Low_complexity Low_complexity 1 44 0 805 253 22 0 chr9 122411119 122411297 -19860147 - MER5A DNA MER1_type -7 182 1 691 259 62 122 chr9 122411341 122411925 -19859519 + L3 LINE CR1 984 1532 -45 349 319 37 15 chr9 122412035 122412170 -19859274 + L2 LINE L2 2590 2727 -587 260 385 60 19 chr9 122412222 122412509 -19858935 + L2 LINE L2 2726 3023 -249 1792 135 161 47 chr9 122412518 122412671 -19858773 + MSTA LTR MaLR 1 135 -293 7938 29 0 31 chr9 122412671 122414122 -19857322 - L1PA4 LINE L1 -2 6153 4719 1792 135 161 47 chr9 122414122 122414309 -19857135 + MSTA LTR MaLR 135 393 -35 1946 152 0 0 chr9 122414309 122414638 -19856806 - AluSx SINE Alu 0 329 1 1792 135 161 47 chr9 122414638 122414679 -19856765 + MSTA LTR MaLR 393 428 0 189 0 0 0 chr9 122414868 122414889 -19856555 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 549 314 108 32 chr9 122414908 122415223 -19856221 - MER102b DNA MER1_type -1 340 2 796 196 124 31 chr9 122416171 122416190 -19855254 + MLT1H LTR MaLR 1 17 -532 216 0 0 0 chr9 122416190 122416214 -19855230 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 796 196 124 31 chr9 122416214 122416388 -19855056 + MLT1H LTR MaLR 17 212 -337 240 167 0 0 chr9 122416406 122416454 -19854990 + CT-rich Low_complexity Low_complexity 2 49 0 431 248 97 110 chr9 122416488 122416807 -19854637 + MLT1H LTR MaLR 235 549 0 259 286 9 67 chr9 122416807 122416912 -19854532 + MIR SINE MIR 87 185 -77 318 180 0 0 chr9 122417474 122417535 -19853909 + A-rich Low_complexity Low_complexity 1 61 0 315 340 10 0 chr9 122417702 122417802 -19853642 - MER117 DNA MER1_type -20 177 77 853 285 27 27 chr9 122417830 122418090 -19853354 - MIR SINE MIR 0 262 3 281 349 12 12 chr9 122418205 122418288 -19853156 - MIR3 SINE MIR -39 169 87 581 298 160 4 chr9 122418370 122418595 -19852849 - MIR SINE MIR -1 261 2 209 253 138 46 chr9 122418953 122419040 -19852404 + L2 LINE L2 3199 3293 -20 277 233 78 11 chr9 122419042 122419132 -19852312 - MIR3 SINE MIR -21 187 92 1900 89 0 0 chr9 122419309 122419555 -19851889 + AluY SINE Alu 55 300 -11 742 272 56 0 chr9 122419993 122420188 -19851256 - MIR3 SINE MIR 0 208 3 1192 227 58 9 chr9 122420531 122420861 -19850583 - LTR37A LTR ERV1 0 426 81 406 222 52 52 chr9 122421169 122421287 -19850157 + MIR SINE MIR 37 153 -65 23 92 0 0 chr9 122421377 122421442 -19850002 + AT_rich Low_complexity Low_complexity 1 65 0 2279 89 13 19 chr9 122422664 122422977 -19848467 + AluY SINE Alu 1 311 0 471 352 87 13 chr9 122423637 122423867 -19847577 - MIR SINE MIR -5 257 11 24 0 0 0 chr9 122424749 122424773 -19846671 + AT_rich Low_complexity Low_complexity 1 24 0 366 306 194 19 chr9 122425490 122425696 -19845748 - MIR SINE MIR -10 252 11 198 328 0 0 chr9 122426007 122426074 -19845370 - L2 LINE L2 -56 3257 3191 * 279 253 10 111 chr9 122426072 122426132 -19845312 - MIR SINE MIR -171 91 43 1316 175 54 29 chr9 122426132 122426446 -19844998 + MER33 DNA MER1_type 1 322 -2 279 253 10 111 chr9 122426446 122426484 -19844960 - MIR SINE MIR -219 43 3 228 238 12 60 chr9 122426598 122426682 -19844762 - L2 LINE L2 -246 3067 2988 185 313 121 10 chr9 122427386 122427485 -19843959 - MIR SINE MIR -130 132 23 318 294 111 22 chr9 122428660 122428840 -19842604 - L2 LINE L2 0 3313 3118 1635 303 196 44 chr9 122428941 122429526 -19841918 - L2 LINE L2 -449 2865 2370 2220 125 6 0 chr9 122429526 122429837 -19841607 - AluSq SINE Alu 0 313 1 1635 303 196 44 chr9 122429837 122431443 -19840001 - L2 LINE L2 -944 2370 307 594 248 0 0 chr9 122431443 122431580 -19839864 + L1MA6 LINE L1 6157 6293 -7 1635 303 196 44 chr9 122431580 122431685 -19839759 - L2 LINE L2 -3007 307 219 234 287 0 35 chr9 122431671 122431758 -19839686 + MIR SINE MIR 179 262 0 * 554 270 63 27 chr9 122433052 122433274 -19838170 + MIR SINE MIR 33 262 0 333 330 76 8 chr9 122433570 122433688 -19837756 + MIR3 SINE MIR 79 204 -4 206 371 35 14 chr9 122434010 122434153 -19837291 + L2 LINE L2 2772 2917 -397 418 383 91 19 chr9 122434173 122434601 -19836843 + L2 LINE L2 2507 2965 -349 270 342 68 34 chr9 122434750 122434867 -19836577 + L2 LINE L2 2942 3062 -210 255 152 0 0 chr9 122437305 122437351 -19834093 + CT-rich Low_complexity Low_complexity 3 48 0 2214 128 0 3 chr9 122437799 122438105 -19833339 + AluSx SINE Alu 1 305 -7 372 294 137 0 chr9 122438273 122438375 -19833069 - L2 LINE L2 -30 3242 3127 1779 177 74 32 chr9 122438802 122439345 -19832099 - MLT2A2 LTR ERVL 0 554 1 2142 59 12 0 chr9 122439875 122440131 -19831313 - L1PA7 LINE L1 -2 6152 5894 522 83 0 0 chr9 122441245 122441317 -19830127 + (TG)n Simple_repeat Simple_repeat 2 73 0 5939 147 39 9 chr9 122441512 122442753 -19828691 + L1MA3 LINE L1 5026 6299 -6 1697 181 10 10 chr9 122442982 122443285 -19828159 + AluJb SINE Alu 9 311 -1 387 204 23 23 chr9 122443352 122443440 -19828004 - L2 LINE L2 0 3313 3226 723 157 32 45 chr9 122443867 122444028 -19827416 + L1PB4 LINE L1 5996 6286 -17 2109 57 8 23 chr9 122444028 122444291 -19827153 - L1PA10 LINE L1 -9 6159 5901 810 251 18 0 chr9 122444354 122444521 -19826923 - MER5A DNA MER1_type 0 189 20 2186 106 3 3 chr9 122445063 122445356 -19826088 - AluY SINE Alu -18 293 1 2187 82 0 3 chr9 122445980 122446262 -19825182 - AluY SINE Alu -8 303 23 251 218 115 0 chr9 122446509 122446587 -19824857 - MIR SINE MIR -65 197 111 656 266 80 5 chr9 122446605 122446804 -19824640 + MIR SINE MIR 32 245 -17 1955 152 10 10 chr9 122448111 122448420 -19823024 - AluJb SINE Alu -2 310 2 23 33 0 0 chr9 122448813 122448843 -19822601 + AT_rich Low_complexity Low_complexity 1 30 0 211 269 55 33 chr9 122450807 122450928 -19820516 + MIR SINE MIR 62 146 -62 444 322 125 6 chr9 122450976 122451181 -19820263 + MIR SINE MIR 33 252 -10 239 340 63 19 chr9 122451317 122451476 -19819968 + MLT1K LTR MaLR 337 502 -86 369 0 0 0 chr9 122451502 122451543 -19819901 + (CA)n Simple_repeat Simple_repeat 1 41 0 1262 300 147 12 chr9 122452500 122452938 -19818506 + L3 LINE CR1 868 1404 -173 1557 55 28 50 chr9 122452938 122453012 -19818432 - L1PA13 LINE L1 0 6163 6089 2013 114 11 3 chr9 122453012 122453316 -19818128 - AluSx SINE Alu -26 286 1 1557 55 28 50 chr9 122453316 122453459 -19817985 - L1PA13 LINE L1 -74 6089 5951 1262 300 147 12 chr9 122453459 122453600 -19817844 + L3 LINE CR1 1404 1525 -52 413 293 88 0 chr9 122453854 122454001 -19817443 + MIR3 SINE MIR 31 190 -18 202 395 16 8 chr9 122454435 122454564 -19816880 - L2 LINE L2 -2 3270 3141 217 319 0 0 chr9 122454618 122454687 -19816757 + L2 LINE L2 3241 3309 -4 492 334 90 59 chr9 122505247 122505923 -19765521 + L2 LINE L2 2376 3071 -201 222 222 0 0 chr9 122506341 122506386 -19765058 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 231 204 0 45 chr9 122506402 122506446 -19764998 - L2 LINE L2 -22 3250 3209 2268 125 0 0 chr9 122506500 122506805 -19764639 + AluSq SINE Alu 1 305 -8 201 256 0 0 chr9 122507247 122507290 -19764154 - MIR3 SINE MIR -17 191 149 382 271 49 33 chr9 122507540 122507662 -19763782 - MIR3 SINE MIR -48 160 37 189 255 78 0 chr9 122507997 122508048 -19763396 + MIR SINE MIR 76 130 -78 519 272 24 35 chr9 122508885 122509054 -19762390 - MIR3 SINE MIR -8 200 34 309 398 81 34 chr9 122509550 122509786 -19761658 - L2 LINE L2 0 3272 3026 250 319 0 0 chr9 122509880 122509952 -19761492 - MIR SINE MIR -117 145 74 25 0 0 0 chr9 122510361 122510386 -19761058 + AT_rich Low_complexity Low_complexity 1 25 0 1659 175 15 7 chr9 122511507 122511776 -19759668 + AluJb SINE Alu 1 271 -41 243 265 29 44 chr9 122511979 122512047 -19759397 + MIR3 SINE MIR 119 185 -23 2234 109 0 6 chr9 122512883 122513195 -19758249 + AluSg SINE Alu 1 310 0 23 0 0 0 chr9 122513422 122513445 -19757999 + AT_rich Low_complexity Low_complexity 1 23 0 732 265 47 97 chr9 122513687 122514473 -19756971 + L1MEc LINE L1 994 1740 -4656 501 270 74 58 chr9 122515305 122515715 -19755729 - MLT1J2 LTR MaLR 0 409 3 2272 174 100 3 chr9 122516531 122516961 -19754483 - MLT2B1 LTR ERVL -40 464 1 196 224 45 30 chr9 122517197 122517264 -19754180 + MIR3 SINE MIR 141 208 0 203 289 19 0 chr9 122517480 122517532 -19753912 + L2 LINE L2 2683 2735 -579 393 317 24 18 chr9 122518773 122518940 -19752504 + Charlie8 DNA MER1_type 27 194 -2223 22 0 0 0 chr9 122519015 122519037 -19752407 + AT_rich Low_complexity Low_complexity 1 22 0 215 225 50 50 chr9 122519335 122519415 -19752029 + MIR SINE MIR 45 124 -84 626 309 58 27 chr9 122519426 122519639 -19751805 - L2 LINE L2 -518 2796 2572 2458 201 74 8 chr9 122519639 122520112 -19751332 - MLT1D LTR MaLR -1 504 1 626 309 58 27 chr9 122520112 122520157 -19751287 - L2 LINE L2 -742 2572 2530 245 109 0 0 chr9 122520351 122520397 -19751047 + LTR66 LTR ERVL 394 439 -171 409 333 11 27 chr9 122520415 122520601 -19750843 + MIR SINE MIR 42 224 -38 584 292 66 25 chr9 122520913 122521156 -19750288 - MIR SINE MIR -7 255 3 400 240 173 0 chr9 122521316 122521420 -19750024 - MIR SINE MIR -62 200 79 2216 119 0 7 chr9 122521421 122521731 -19749713 - AluSg SINE Alu -2 308 1 297 319 53 0 chr9 122521790 122521899 -19749545 - MIR3 SINE MIR -41 167 72 * 341 275 142 43 chr9 122521896 122522107 -19749337 + MIR SINE MIR 8 239 -23 563 310 67 4 chr9 122523294 122523533 -19747911 + MIR SINE MIR 8 261 -1 524 125 0 12 chr9 122523669 122523749 -19747695 - MADE1 DNA Mariner -1 79 1 311 326 9 74 chr9 122523855 122524070 -19747374 + MIR SINE MIR 20 220 -42 22 35 0 0 chr9 122524099 122524128 -19747316 + AT_rich Low_complexity Low_complexity 1 29 0 424 182 23 23 chr9 122524270 122524358 -19747086 - MER117 DNA MER1_type -49 148 61 361 285 174 7 chr9 122524440 122524584 -19746860 + MIR SINE MIR 13 180 -82 452 316 75 16 chr9 122524800 122524987 -19746457 + MIR SINE MIR 25 222 -40 296 244 24 24 chr9 122525407 122525489 -19745955 - MER103 DNA DNA -23 143 62 1598 238 32 15 chr9 122525748 122526156 -19745288 + MLT1C LTR MaLR 1 415 -52 909 308 191 21 chr9 122526196 122527265 -19744179 + L2 LINE L2 2041 3298 -15 38 0 0 0 chr9 122527271 122527309 -19744135 + AT_rich Low_complexity Low_complexity 1 38 0 685 322 62 0 chr9 122527657 122527899 -19743545 - MIR SINE MIR 0 262 6 212 333 0 13 chr9 122527950 122528025 -19743419 - MIR SINE MIR -108 154 81 440 285 100 46 chr9 122529065 122529325 -19742119 - MLT1E LTR MaLR -313 280 7 246 156 0 0 chr9 122529335 122529380 -19742064 + CT-rich Low_complexity Low_complexity 3 47 0 283 307 242 13 chr9 122529706 122529859 -19741585 + MIR SINE MIR 4 191 -71 394 284 33 57 chr9 122530014 122530190 -19741254 - MIR3 SINE MIR -68 140 1 228 293 37 0 chr9 122530635 122530717 -19740727 + L3 LINE CR1 1374 1458 -119 609 143 6 9 chr9 122530861 122530976 -19740468 - L1MA9 LINE L1 -3 6288 6176 432 300 25 8 chr9 122530993 122531113 -19740331 + MER5A DNA MER1_type 65 186 -3 312 267 147 17 chr9 122531420 122531536 -19739908 - L2 LINE L2 0 3272 3142 301 281 91 25 chr9 122531731 122531852 -19739592 + MIR3 SINE MIR 37 165 -43 365 103 35 17 chr9 122531906 122531964 -19739480 + MER20 DNA MER1_type 19 77 -142 459 208 8 58 chr9 122532392 122532512 -19738932 - L2 LINE L2 0 3313 3200 186 354 48 35 chr9 122532656 122532885 -19738559 - L2 LINE L2 -338 2976 2745 323 216 64 96 chr9 122533627 122533752 -19737692 + MER61B LTR ERV1 13 133 -292 347 188 14 0 chr9 122533758 122533827 -19737617 + LTR1 LTR ERV1 121 190 -595 * 1963 163 192 108 chr9 122533797 122534454 -19736990 + LTR28 LTR ERV1 309 1020 0 1341 164 148 36 chr9 122534835 122535139 -19736305 + MER58B DNA MER1_type 1 338 -3 254 333 8 32 chr9 122536403 122536493 -19734951 - MIR SINE MIR -13 249 161 2405 124 16 36 chr9 122536493 122536879 -19734565 - MER83B LTR ERV1 0 378 1 254 333 8 32 chr9 122536879 122536914 -19734530 - MIR SINE MIR -101 161 127 549 284 15 81 chr9 122537615 122537668 -19733776 - MIR3 SINE MIR -3 205 150 484 287 94 11 chr9 122537668 122537849 -19733595 + MER117 DNA MER1_type 1 196 -1 549 284 15 81 chr9 122537849 122537992 -19733452 - MIR3 SINE MIR -58 150 22 2367 178 40 85 chr9 122538886 122539465 -19731979 + MLT2B3 LTR ERVL 2 554 0 813 311 16 0 chr9 122539580 122539837 -19731607 + MIR SINE MIR 1 261 -1 315 326 62 16 chr9 122539878 122540007 -19731437 + L2 LINE L2 3138 3272 0 326 265 19 161 chr9 122540709 122541026 -19730418 - L2 LINE L2 -66 3206 2935 245 344 10 0 chr9 122541032 122541128 -19730316 + MIR SINE MIR 165 261 -1 266 339 67 33 chr9 122541819 122541999 -19729445 + L2 LINE L2 3037 3222 -50 2367 185 60 58 chr9 122542001 122542504 -19728940 + MLT1D LTR MaLR 2 505 0 2925 82 3 0 chr9 122542868 122543220 -19728224 + THE1A LTR MaLR 3 355 0 12615 92 2 2 chr9 122543220 122544799 -19726645 + THE1A-int LTR MaLR 1 1580 0 2863 90 3 0 chr9 122544799 122545153 -19726291 + THE1A LTR MaLR 1 355 0 348 227 62 21 chr9 122545576 122545673 -19725771 + MER5A DNA MER1_type 87 187 -2 313 320 40 0 chr9 122545698 122545798 -19725646 - MIR SINE MIR -71 137 34 259 227 34 45 chr9 122545903 122545991 -19725453 - MIR SINE MIR -76 186 100 180 241 145 12 chr9 122546652 122546735 -19724709 - MIR SINE MIR -12 250 157 315 364 123 12 chr9 122547241 122547494 -19723950 + L2 LINE L2 3032 3312 -1 231 88 0 0 chr9 122547495 122547529 -19723915 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 246 146 21 0 chr9 122547775 122547823 -19723621 + L1MB7 LINE L1 6131 6179 -5 638 260 57 16 chr9 122547844 122548036 -19723408 - L2 LINE L2 -2647 667 468 191 214 71 0 chr9 122548044 122548086 -19723358 - MIR SINE MIR -79 183 139 194 340 0 0 chr9 122548158 122548205 -19723239 - MIR SINE MIR -188 74 28 960 303 80 5 chr9 122548307 122548680 -19722764 - L2 LINE L2 -2911 403 3 201 74 0 0 chr9 122548732 122548759 -19722685 + (T)n Simple_repeat Simple_repeat 1 27 0 354 123 0 0 chr9 122549432 122549489 -19721955 + (GGA)n Simple_repeat Simple_repeat 2 58 0 431 305 95 20 chr9 122549589 122549789 -19721655 + MIR SINE MIR 48 262 0 208 294 0 29 chr9 122549867 122549935 -19721509 + GA-rich Low_complexity Low_complexity 2 67 0 261 280 53 0 chr9 122550015 122550090 -19721354 + MIR SINE MIR 95 173 -89 197 216 162 40 chr9 122550194 122550268 -19721176 + MIR SINE MIR 173 255 -7 3622 134 31 10 chr9 122551133 122551649 -19719795 + MER1A DNA MER1_type 1 527 0 219 346 140 9 chr9 122551748 122551855 -19719589 + L2 LINE L2 3136 3256 -16 527 355 40 9 chr9 122551861 122552089 -19719355 + MIR SINE MIR 28 262 0 258 250 200 12 chr9 122552222 122552302 -19719142 - MIR SINE MIR -76 186 92 201 100 25 25 chr9 122552546 122552586 -19718858 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 519 240 24 8 chr9 122553025 122553150 -19718294 + L2 LINE L2 3186 3312 -1 307 326 37 57 chr9 122553934 122554099 -19717345 - MIR SINE MIR -3 259 99 2256 131 0 0 chr9 122554099 122554405 -19717039 + AluSx SINE Alu 1 306 -6 307 326 37 57 chr9 122554405 122554484 -19716960 - MIR SINE MIR -163 99 20 912 140 11 6 chr9 122554812 122554990 -19716454 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2158 119 0 3 chr9 122555477 122555779 -19715665 + AluSq SINE Alu 11 311 -2 520 289 0 0 chr9 122556361 122556489 -19714955 + MLT1H LTR MaLR 106 233 -316 654 234 31 7 chr9 122556587 122556745 -19714699 + MLT1H LTR MaLR 406 547 -2 865 347 23 40 chr9 122556952 122557427 -19714017 + L2 LINE L2 2847 3313 0 235 250 0 0 chr9 122558441 122558489 -19712955 - L3 LINE CR1 -4 1573 1526 449 314 16 46 chr9 122560101 122560257 -19711187 + MIR3 SINE MIR 2 152 -56 2817 145 32 2 chr9 122560257 122560692 -19710752 + MER83 LTR ERV1 1 448 0 449 314 16 46 chr9 122560692 122560729 -19710715 + MIR3 SINE MIR 152 189 -19 483 275 61 14 chr9 122560786 122560963 -19710481 + MIR SINE MIR 3 191 -61 441 243 19 10 chr9 122560985 122561088 -19710356 + L2 LINE L2 3168 3271 -1 206 329 0 12 chr9 122561154 122561239 -19710205 + CT-rich Low_complexity Low_complexity 4 87 0 255 318 71 24 chr9 122561678 122561804 -19709640 - MIR3 SINE MIR -9 199 68 341 102 0 0 chr9 122562250 122562299 -19709145 - L1P LINE L1 -4039 2107 2059 8675 89 9 2 chr9 122562304 122564228 -19707216 + L1PA7 LINE L1 4235 6167 0 356 212 38 98 chr9 122564339 122564471 -19706973 + L2 LINE L2 3190 3313 0 342 365 39 11 chr9 122564501 122564682 -19706762 + MIR SINE MIR 49 234 -28 3123 139 17 2 chr9 122564947 122565428 -19706016 + L1PB4 LINE L1 5662 6149 -7 370 266 60 95 chr9 122566102 122566418 -19705026 - L2 LINE L2 -122 3191 2887 373 326 64 7 chr9 122567308 122567449 -19703995 + MIR3 SINE MIR 31 179 -29 808 138 0 19 chr9 122567449 122567609 -19703835 + (TTCC)n Simple_repeat Simple_repeat 4 160 0 413 270 57 38 chr9 122568059 122568218 -19703226 + MER117 DNA MER1_type 30 191 -6 362 277 28 43 chr9 122568227 122568368 -19703076 - MIR SINE MIR -107 155 17 541 339 24 40 chr9 122568680 122568928 -19702516 + MIR SINE MIR 18 261 -1 183 80 0 0 chr9 122568976 122569001 -19702443 + (CAT)n Simple_repeat Simple_repeat 1 25 0 214 172 47 16 chr9 122569118 122569182 -19702262 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 319 243 100 36 chr9 122569182 122569360 -19702084 - MIR SINE MIR -62 146 3 396 321 36 7 chr9 122570110 122570250 -19701194 + MIR SINE MIR 5 148 -114 388 220 89 122 chr9 122570280 122570494 -19700950 - MIR SINE MIR 0 262 56 340 212 121 28 chr9 122570494 122570676 -19700768 - LTR33 LTR ERVL -29 492 254 311 247 37 0 chr9 122570759 122570840 -19700604 - LTR33 LTR ERVL -433 88 5 432 82 0 0 chr9 122571663 122571724 -19699720 + (GGA)n Simple_repeat Simple_repeat 2 62 0 2333 106 3 0 chr9 122571997 122572308 -19699136 - AluSx SINE Alu 0 312 1 429 355 0 11 chr9 122572363 122572552 -19698892 - MIR SINE MIR -52 210 24 343 273 56 31 chr9 122572569 122572730 -19698714 + MIR SINE MIR 48 212 -50 181 211 211 0 chr9 122573133 122573185 -19698259 - L2 LINE L2 0 3313 3251 * 1004 263 18 0 chr9 122573154 122573382 -19698062 - MIR SINE MIR -26 236 5 225 160 163 16 chr9 122573888 122573973 -19697471 - MIR SINE MIR -62 146 49 182 376 12 24 chr9 122574182 122574267 -19697177 - MIR SINE MIR -156 106 23 182 374 22 0 chr9 122575140 122575231 -19696213 - MIR3 SINE MIR -5 203 111 337 227 13 0 chr9 122575808 122575883 -19695561 - MER103 DNA DNA -83 83 8 528 279 29 12 chr9 122576146 122576318 -19695126 + MIR SINE MIR 86 260 -2 1084 201 14 9 chr9 122576579 122576798 -19694646 + L1MB3 LINE L1 5964 6183 0 237 242 0 45 chr9 122576955 122577021 -19694423 + MLT1E LTR MaLR 393 455 -138 297 279 8 39 chr9 122577618 122577747 -19693697 + L3b LINE CR1 1113 1237 -346 497 311 102 0 chr9 122578338 122578505 -19692939 + MIR SINE MIR 53 236 -26 405 266 35 35 chr9 122578931 122579104 -19692340 + MER5B DNA MER1_type 1 173 -5 1906 167 39 0 chr9 122579274 122579604 -19691840 + MER47A DNA MER2_type 1 343 -23 23 0 0 0 chr9 122580093 122580116 -19691328 + AT_rich Low_complexity Low_complexity 1 23 0 1102 266 91 26 chr9 122580616 122581033 -19690411 + LTR16A LTR ERVL 7 450 0 345 333 41 0 chr9 122581111 122581234 -19690210 - MIR SINE MIR -87 175 48 207 0 0 0 chr9 122581785 122581808 -19689636 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 767 217 60 5 chr9 122582574 122582758 -19688686 - L1MB5 LINE L1 -2 6172 5979 518 235 87 13 chr9 122582950 122583099 -19688345 - MIR SINE MIR 0 262 103 202 299 26 0 chr9 122584422 122584499 -19686945 - MIR SINE MIR -4 258 180 486 277 138 18 chr9 122584611 122584835 -19686609 - MIR SINE MIR -6 256 6 732 129 0 0 chr9 122586295 122586419 -19685025 + (TCCA)n Simple_repeat Simple_repeat 2 125 0 189 347 14 0 chr9 122586428 122586500 -19684944 - L2 LINE L2 -27 3286 3214 301 275 201 7 chr9 122586632 122586781 -19684663 + MIR SINE MIR 84 261 -1 264 368 53 15 chr9 122586833 122586966 -19684478 + L2 LINE L2 2728 2865 -449 237 224 20 0 chr9 122586999 122587048 -19684396 + MLT1I LTR MaLR 1 50 -359 * 373 300 73 59 chr9 122587019 122587166 -19684278 + MLT1I LTR MaLR 187 339 -70 1529 240 22 16 chr9 122587166 122587529 -19683915 + MLT1A1 LTR MaLR 1 365 0 373 300 73 59 chr9 122587529 122587601 -19683843 + MLT1I LTR MaLR 339 409 0 669 297 112 36 chr9 122587625 122587982 -19683462 + L2 LINE L2 2929 3312 -1 684 106 75 12 chr9 122587990 122588233 -19683211 + GA-rich Low_complexity Low_complexity 1 258 0 213 161 0 71 chr9 122588485 122588541 -19682903 + GA-rich Low_complexity Low_complexity 4 55 0 1227 183 27 2 chr9 122589357 122589632 -19681812 - L1PA16 LINE L1 0 6166 5858 * 1256 169 16 8 chr9 122589630 122589820 -19681624 + L1PA16 LINE L1 5592 5779 -387 2298 121 0 0 chr9 122589820 122590127 -19681317 + AluSq SINE Alu 1 307 -6 432 0 0 0 chr9 122590132 122590180 -19681264 + (TA)n Simple_repeat Simple_repeat 1 48 0 234 0 0 0 chr9 122590179 122590205 -19681239 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 1256 169 16 8 chr9 122590180 122590250 -19681194 + L1PA16 LINE L1 5782 5835 -331 282 311 25 25 chr9 122590333 122590452 -19680992 - MIR SINE MIR -52 210 92 462 198 72 54 chr9 122591058 122591225 -19680219 - MER96B DNA MER1_type? -236 181 12 1877 166 0 32 chr9 122591275 122591589 -19679855 - AluJb SINE Alu -8 304 1 376 300 31 15 chr9 122591703 122591833 -19679611 + MIR SINE MIR 31 162 -100 2069 119 3 14 chr9 122591881 122592176 -19679268 + AluSx SINE Alu 1 292 -20 31 0 0 0 chr9 122592176 122592207 -19679237 + AT_rich Low_complexity Low_complexity 1 31 0 411 284 169 35 chr9 122592312 122592513 -19678931 + MIR SINE MIR 22 249 -13 352 336 46 23 chr9 122592538 122592669 -19678775 - MIR3 SINE MIR -69 139 6 917 294 26 68 chr9 122593407 122594075 -19677369 - L2 LINE L2 -5 3267 2632 585 259 190 55 chr9 122594173 122594647 -19676797 + MLT1H LTR MaLR 12 549 0 360 267 125 25 chr9 122594663 122594783 -19676661 + L2 LINE L2 3182 3313 0 223 381 67 38 chr9 122594933 122595038 -19676406 - L2 LINE L2 -32 3240 3133 509 202 69 87 chr9 122595062 122595235 -19676209 - MIR SINE MIR -15 247 78 234 382 34 10 chr9 122595363 122595567 -19675877 - L2 LINE L2 -250 3022 2814 309 287 35 43 chr9 122595683 122595798 -19675646 + MIR3 SINE MIR 47 160 -48 366 281 11 0 chr9 122595841 122595930 -19675514 + MIR SINE MIR 155 244 -18 734 284 14 24 chr9 122596012 122596223 -19675221 + MIR SINE MIR 44 252 -10 418 336 0 8 chr9 122596239 122596367 -19675077 - MIR SINE MIR -118 144 18 248 270 70 26 chr9 122596710 122596825 -19674619 + MIR3 SINE MIR 15 134 -74 437 219 50 25 chr9 122596838 122596957 -19674487 + MER94 DNA DNA 13 134 0 509 289 25 20 chr9 122598362 122598559 -19672885 + MIR SINE MIR 65 262 0 325 309 11 0 chr9 122598581 122598675 -19672769 + MIR SINE MIR 168 262 0 221 296 63 56 chr9 122598808 122598950 -19672494 - MER5A DNA MER1_type 0 189 47 379 271 156 20 chr9 122599064 122599263 -19672181 - MIR SINE MIR -36 226 1 209 279 45 91 chr9 122599285 122599439 -19672005 - L2 LINE L2 -301 2971 2825 792 233 57 126 chr9 122599447 122599971 -19671473 - MLT1J LTR MaLR 0 511 24 307 212 15 0 chr9 122600026 122600092 -19671352 - MIR SINE MIR -21 241 175 205 321 145 13 chr9 122600233 122600392 -19671052 + MIR3 SINE MIR 16 195 -13 722 322 81 61 chr9 122600578 122601349 -19670095 + L2 LINE L2 2422 3213 -59 328 224 105 0 chr9 122601516 122601592 -19669852 - MIR SINE MIR -70 192 109 2114 134 0 3 chr9 122601646 122601953 -19669491 - AluSx SINE Alu -6 306 1 338 145 0 29 chr9 122602339 122602408 -19669036 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 680 295 40 18 chr9 122603193 122603420 -19668024 - MIR SINE MIR -30 232 1 684 276 10 25 chr9 122603928 122604131 -19667313 + MIR SINE MIR 49 248 -14 332 336 58 7 chr9 122604359 122604496 -19666948 - MIR SINE MIR -63 145 28 251 257 27 49 chr9 122605266 122605449 -19665995 + (TG)n Simple_repeat Simple_repeat 1 179 0 558 282 82 51 chr9 122606245 122606539 -19664905 - L2 LINE L2 -5 3308 3006 1516 189 15 4 chr9 122606559 122606824 -19664620 + AluJb SINE Alu 1 268 -44 204 329 43 12 chr9 122606833 122606997 -19664447 - L2 LINE L2 -416 2898 2730 574 244 8 8 chr9 122607126 122607249 -19664195 - MER5A DNA MER1_type -2 187 65 325 98 59 0 chr9 122607350 122607401 -19664043 - MER5A DNA MER1_type -135 54 1 484 323 97 15 chr9 122607514 122607709 -19663735 - MIR SINE MIR -25 237 27 1445 118 0 5 chr9 122607766 122607969 -19663475 - THE1B LTR MaLR 0 364 163 196 206 14 96 chr9 122608089 122608162 -19663282 - MIR3 SINE MIR -133 75 9 360 0 0 0 chr9 122608235 122608275 -19663169 + (CA)n Simple_repeat Simple_repeat 2 41 0 731 229 18 24 chr9 122608852 122609018 -19662426 - MIR SINE MIR -70 192 28 932 159 29 73 chr9 122609351 122609596 -19661848 - L1ME LINE L1 -623 5539 5306 662 253 38 0 chr9 122609576 122609762 -19661682 - L1PB4 LINE L1 -3 6153 5961 * 362 273 123 0 chr9 122609769 122609923 -19661521 - L1ME LINE L1 -841 5305 5133 829 257 63 13 chr9 122609998 122610298 -19661146 - L1ME LINE L1 -1010 5136 4822 305 228 30 79 chr9 122610375 122610476 -19660968 + MIR3 SINE MIR 68 163 -45 2013 189 87 42 chr9 122610689 122611046 -19660398 - MLT1D LTR MaLR -1 504 118 2666 113 6 3 chr9 122611046 122611409 -19660035 - THE1B LTR MaLR 0 364 1 2013 189 87 42 chr9 122611409 122611533 -19659911 - MLT1D LTR MaLR -387 118 1 244 322 23 0 chr9 122611727 122611814 -19659630 + MIR3 SINE MIR 73 161 -47 226 171 24 0 chr9 122611900 122611941 -19659503 - Charlie8 DNA MER1_type -2142 275 234 190 159 8 143 chr9 122612985 122613081 -19658363 - MIR SINE MIR -79 183 106 2593 117 22 6 chr9 122613578 122613936 -19657508 - THE1B LTR MaLR 0 364 1 398 287 31 23 chr9 122614058 122614187 -19657257 + L2 LINE L2 3143 3272 0 223 213 66 0 chr9 122614181 122614242 -19657202 - MIR SINE MIR -61 201 137 * 486 226 131 7 chr9 122614260 122614397 -19657047 - MIR SINE MIR 0 262 109 456 113 14 14 chr9 122614586 122614657 -19656787 + MLT1C LTR MaLR 397 467 0 298 259 175 0 chr9 122614657 122614800 -19656644 + MIR SINE MIR 81 248 -14 218 317 0 17 chr9 122615231 122615291 -19656153 - L3 LINE CR1 -6 1571 1513 248 316 171 18 chr9 122615426 122615654 -19655790 + L2 LINE L2 2808 3070 -202 184 255 59 0 chr9 122615917 122615968 -19655476 - L2 LINE L2 -12 3260 3207 205 296 0 0 chr9 122616016 122616070 -19655374 - MIR SINE MIR -107 155 102 334 312 105 68 chr9 122616084 122616379 -19655065 - L2 LINE L2 0 3272 2967 284 331 212 0 chr9 122616648 122616832 -19654612 - MLT1J2 LTR MaLR -2 448 226 12051 207 21 10 chr9 122616879 122618671 -19652773 + L1PA16 LINE L1 2567 4404 -1762 198 0 0 0 chr9 122618671 122618693 -19652751 + (CA)n Simple_repeat Simple_repeat 1 22 0 12051 207 21 10 chr9 122618693 122619777 -19651667 + L1PA16 LINE L1 4404 5475 -691 4510 126 12 33 chr9 122619817 122620539 -19650905 + L1PA16 LINE L1 5460 6166 0 281 135 19 0 chr9 122620598 122620650 -19650794 + GA-rich Low_complexity Low_complexity 1 53 0 334 275 76 9 chr9 122620656 122620780 -19650664 - MLT1J2 LTR MaLR -234 212 93 201 284 8 67 chr9 122621073 122621207 -19650237 - MIR3 SINE MIR -49 159 34 233 296 125 59 chr9 122622095 122622247 -19649197 - L2 LINE L2 -76 3196 3035 4426 144 18 83 chr9 122622260 122623792 -19647652 - pTR5 LTR ERV1 0 2606 1524 1609 188 90 27 chr9 122623889 122624256 -19647188 - MLT1B LTR MaLR 0 390 1 364 352 62 12 chr9 122624312 122624474 -19646970 + MIR SINE MIR 19 188 -74 930 215 67 14 chr9 122624583 122624806 -19646638 - MIR SINE MIR 0 262 28 216 190 17 86 chr9 122625495 122625553 -19645891 + L2 LINE L2 3256 3309 -4 835 301 73 66 chr9 122625566 122626110 -19645334 - L2 LINE L2 -501 2813 2266 198 167 0 0 chr9 122626777 122626813 -19644631 + (TG)n Simple_repeat Simple_repeat 1 36 0 343 302 0 21 chr9 122626900 122626996 -19644448 + MIR SINE MIR 23 116 -92 262 272 184 0 chr9 122627984 122628087 -19643357 - L2 LINE L2 -219 3053 2932 2639 48 0 6 chr9 122628540 122628853 -19642591 - AluY SINE Alu 0 311 1 181 341 44 139 chr9 122629436 122629709 -19641735 - L2 LINE L2 -19 3253 3007 243 333 29 19 chr9 122630417 122630522 -19640922 - MIR SINE MIR -123 139 34 562 281 121 5 chr9 122630680 122630879 -19640565 - MER58A DNA MER1_type -1 223 2 321 301 20 5 chr9 122630879 122631015 -19640429 - MIR SINE MIR -66 142 4 356 303 168 0 chr9 122631603 122631722 -19639722 - L2 LINE L2 0 3272 3134 506 297 51 17 chr9 122632055 122632230 -19639214 - MIR3 SINE MIR -15 193 13 221 0 35 0 chr9 122633330 122633359 -19638085 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 198 270 96 17 chr9 122633392 122633507 -19637937 + L2 LINE L2 2925 3048 -224 2125 113 7 7 chr9 122633732 122634025 -19637419 - AluSc SINE Alu -16 293 1 1970 150 0 7 chr9 122634317 122634604 -19636840 + AluSx SINE Alu 1 285 -27 240 35 0 0 chr9 122634604 122634633 -19636811 + (CA)n Simple_repeat Simple_repeat 2 30 0 208 188 47 16 chr9 122634633 122634697 -19636747 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 705 264 5 31 chr9 122635376 122635569 -19635875 + MER5A DNA MER1_type 1 188 -1 1767 198 36 0 chr9 122636466 122636795 -19634649 - MER58B DNA MER1_type 0 341 1 357 268 62 9 chr9 122637115 122637227 -19634217 - MIR SINE MIR -79 183 66 531 0 0 0 chr9 122637731 122637790 -19633654 + (TA)n Simple_repeat Simple_repeat 2 60 0 356 336 50 0 chr9 122638157 122638297 -19633147 + MIR SINE MIR 84 230 -32 2195 193 3 0 chr9 122638429 122638791 -19632653 + MLT1A1 LTR MaLR 3 365 0 298 340 31 25 chr9 122639756 122639965 -19631479 - MIR SINE MIR -44 218 4 23 0 0 0 chr9 122640105 122640128 -19631316 + AT_rich Low_complexity Low_complexity 1 23 0 463 329 12 18 chr9 122640148 122640312 -19631132 - MIR SINE MIR -44 218 56 1438 186 49 11 chr9 122640423 122640687 -19630757 - AluJo SINE Alu -38 274 1 352 331 41 0 chr9 122640899 122641020 -19630424 - L2 LINE L2 0 3272 3147 213 222 0 19 chr9 122641042 122641096 -19630348 + L2 LINE L2 3258 3310 -3 * 334 303 8 42 chr9 122641088 122641207 -19630237 - L2 LINE L2 -12 3301 3187 219 280 20 0 chr9 122641955 122642005 -19629439 - L2 LINE L2 -24 3248 3198 754 314 32 38 chr9 122642198 122642570 -19628874 + MLT1I LTR MaLR 33 402 -7 211 212 121 30 chr9 122642637 122642703 -19628741 - L2 LINE L2 -219 3053 2982 541 164 21 79 chr9 122642737 122642877 -19628567 + MIR SINE MIR 83 214 -48 451 227 82 62 chr9 122642880 122643074 -19628370 - MLT1K LTR MaLR 0 588 391 217 180 80 0 chr9 122643564 122643614 -19627830 + (CATG)n Simple_repeat Simple_repeat 3 56 0 296 272 12 12 chr9 122643614 122643787 -19627657 + (TG)n Simple_repeat Simple_repeat 2 174 0 3023 158 45 19 chr9 122644123 122644704 -19626740 - L1MB7 LINE L1 -220 5964 5369 4339 297 124 29 chr9 122644731 122646958 -19624486 + L2 LINE L2 692 3181 -132 228 111 0 0 chr9 122646958 122646994 -19624450 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 4339 297 124 29 chr9 122646994 122647141 -19624303 + L2 LINE L2 3181 3313 0 4642 45 2 0 chr9 122647239 122647768 -19623676 - L1PA7 LINE L1 0 6154 5625 3760 143 19 27 chr9 122647784 122648414 -19623030 - L1MA7 LINE L1 -5 6286 5662 1242 146 29 5 chr9 122648418 122648623 -19622821 - L1MA7 LINE L1 -733 5558 5349 360 137 0 0 chr9 122648609 122648660 -19622784 + L1M2 LINE L1 5629 5679 -612 * 314 296 26 43 chr9 122648698 122648830 -19622614 + MIR SINE MIR 1 132 -76 436 276 133 7 chr9 122649135 122649295 -19622149 - MIR SINE MIR -52 210 33 361 258 11 107 chr9 122649347 122649525 -19621919 + MIR SINE MIR 56 216 -46 227 210 0 97 chr9 122650287 122650349 -19621095 - L2 LINE L2 -8 3305 3250 598 239 28 21 chr9 122650384 122650526 -19620918 + MIR SINE MIR 15 157 -105 4050 183 34 27 chr9 122651157 122652044 -19619400 + L1MB8 LINE L1 5285 6177 -1 233 223 23 16 chr9 122652046 122652121 -19619323 + MLT1L LTR MaLR 511 597 0 187 266 94 62 chr9 122652196 122652324 -19619120 + L2 LINE L2 2761 2892 -422 195 337 0 35 chr9 122652604 122652690 -19618754 + MIR SINE MIR 174 256 -6 218 355 122 0 chr9 122652977 122653084 -19618360 + L2 LINE L2 3153 3272 0 249 288 64 32 chr9 122653111 122653236 -19618208 + L2 LINE L2 3134 3262 -10 229 367 82 25 chr9 122653343 122653501 -19617943 + L2 LINE L2 3100 3266 -6 291 308 100 17 chr9 122653659 122653779 -19617665 + L2 LINE L2 3164 3293 -20 499 308 44 60 chr9 122654400 122654718 -19616726 + L2 LINE L2 3001 3313 0 382 372 10 15 chr9 122654877 122655076 -19616368 - MIR SINE MIR -57 205 8 199 324 9 38 chr9 122655963 122656068 -19615376 - MIR SINE MIR -50 212 111 360 227 0 57 chr9 122656410 122656498 -19614946 + L2 LINE L2 2945 3027 -286 1720 160 19 7 chr9 122656506 122656829 -19614615 - L1M LINE L1 -772 5374 5057 473 72 116 0 chr9 122656829 122656895 -19614549 + L1PA13 LINE L1 6075 6151 -12 253 268 13 116 chr9 122656923 122657147 -19614297 + L2 LINE L2 3045 3245 -68 249 245 184 20 chr9 122657224 122657322 -19614122 - MIR SINE MIR -147 115 2 320 285 48 42 chr9 122657428 122657593 -19613851 - MLT1L LTR MaLR -53 562 397 771 240 113 27 chr9 122657643 122657935 -19613509 - L1MD2 LINE L1 -3 6356 6040 1508 231 61 72 chr9 122657936 122658379 -19613065 - L1M4 LINE L1 -1575 4571 4136 1022 138 21 0 chr9 122658379 122658568 -19612876 - L1MA7 LINE L1 -6 6285 6093 1508 231 61 72 chr9 122658568 122658761 -19612683 - L1M4 LINE L1 -2010 4136 3942 5128 62 0 2 chr9 122658766 122659408 -19612036 + L1PA5 LINE L1 5511 6151 -3 27 62 0 0 chr9 122659408 122659456 -19611988 + AT_rich Low_complexity Low_complexity 1 48 0 189 331 15 52 chr9 122659915 122660051 -19611393 + MIR3 SINE MIR 15 145 -63 366 273 10 10 chr9 122660283 122660382 -19611062 - L2 LINE L2 -1 3271 3173 2569 143 16 35 chr9 122660634 122661068 -19610376 + MSTB LTR MaLR 1 426 0 1757 154 27 16 chr9 122661168 122661503 -19609941 - MSTA LTR MaLR 0 428 77 419 287 31 31 chr9 122662391 122662578 -19608866 + MIR3 SINE MIR 14 201 -7 184 292 15 15 chr9 122662598 122662663 -19608781 - MIR SINE MIR -22 240 176 824 267 73 79 chr9 122663435 122663941 -19607503 + MLT1J LTR MaLR 1 503 -8 695 219 7 7 chr9 122664065 122664211 -19607233 - MER104 DNA Tc2 -1 179 34 215 204 0 0 chr9 122665882 122665926 -19605518 - MIR SINE MIR -112 150 107 403 274 153 0 chr9 122666052 122666242 -19605202 - MIR SINE MIR -6 256 38 229 261 23 34 chr9 122666628 122666716 -19604728 + GA-rich Low_complexity Low_complexity 3 89 0 211 313 0 0 chr9 122667371 122667419 -19604025 + MIR SINE MIR 106 153 -55 678 254 94 5 chr9 122667449 122667673 -19603771 + MIR SINE MIR 3 246 -16 1460 163 42 62 chr9 122667905 122668168 -19603276 + L1MA10 LINE L1 5998 6254 -80 201 39 0 0 chr9 122668168 122668194 -19603250 + (TA)n Simple_repeat Simple_repeat 1 26 0 1460 163 42 62 chr9 122668194 122668267 -19603177 + L1MA10 LINE L1 6254 6327 -7 225 94 0 0 chr9 122668427 122668459 -19602985 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1888 173 16 27 chr9 122669033 122669402 -19602042 + MLT1A1 LTR MaLR 1 365 0 1795 242 129 19 chr9 122669521 122670055 -19601389 + MLT1E LTR MaLR 1 593 0 632 184 43 7 chr9 122670272 122670413 -19601031 - Charlie5 DNA MER1_type -30 2582 2437 339 146 0 0 chr9 122670422 122670470 -19600974 - Charlie5 DNA MER1_type -2546 66 19 576 282 58 91 chr9 122670840 122671322 -19600122 - L2 LINE L2 -1 3271 2806 314 235 70 52 chr9 122671643 122671758 -19599686 - MER96 DNA MER1_type? -55 120 4 375 241 110 27 chr9 122671966 122672135 -19599309 - MIR SINE MIR -44 218 37 290 171 0 71 chr9 122672262 122672332 -19599112 + L2 LINE L2 3247 3311 -2 213 209 0 0 chr9 122672802 122672845 -19598599 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 263 292 54 46 chr9 122672845 122672975 -19598469 + MIR3 SINE MIR 10 140 -68 641 269 58 31 chr9 122673616 122673839 -19597605 - MIR SINE MIR -26 236 8 609 225 14 7 chr9 122673865 122674003 -19597441 - MIR SINE MIR -114 148 10 193 299 13 0 chr9 122674095 122674172 -19597272 - L2 LINE L2 -78 3235 3158 213 250 12 50 chr9 122674330 122674410 -19597034 + G-rich Low_complexity Low_complexity 5 81 0 223 343 0 0 chr9 122674473 122674540 -19596904 - L3 LINE CR1 -86 1491 1425 303 261 85 8 chr9 122674596 122674726 -19596718 + MIR SINE MIR 121 260 -2 206 260 0 0 chr9 122674736 122674786 -19596658 + (TTA)n Simple_repeat Simple_repeat 1 50 0 388 329 98 0 chr9 122674812 122675018 -19596426 + MIR SINE MIR 37 261 -1 392 268 79 0 chr9 122675202 122675329 -19596115 + L3 LINE CR1 1368 1504 -73 421 286 138 70 chr9 122675558 122676044 -19595400 - MLT1H LTR MaLR 0 549 31 335 269 82 0 chr9 122676205 122676339 -19595105 + MIR SINE MIR 68 212 -50 477 161 11 0 chr9 122676359 122676446 -19594998 + L1MB4 LINE L1 6092 6179 -1 589 252 39 101 chr9 122677061 122677407 -19594037 - MLT1H LTR MaLR 0 549 109 491 289 15 30 chr9 122679109 122679306 -19592138 - MER117 DNA MER1_type -3 194 1 533 315 91 0 chr9 122679357 122679554 -19591890 - MIR SINE MIR 0 262 48 720 74 0 0 chr9 122679898 122680006 -19591438 + (GGAA)n Simple_repeat Simple_repeat 3 110 0 248 0 31 0 chr9 122680420 122680452 -19590992 + (CA)n Simple_repeat Simple_repeat 1 33 0 * 327 25 0 0 chr9 122680451 122680491 -19590953 + (TC)n Simple_repeat Simple_repeat 2 41 0 238 391 21 12 chr9 122680496 122680804 -19590640 + L2 LINE L2 2737 3045 -227 298 227 140 32 chr9 122681945 122682070 -19589374 + MIR SINE MIR 38 181 -64 421 306 0 0 chr9 122682425 122682533 -19588911 - MIR SINE MIR -109 153 46 446 210 126 0 chr9 122683132 122683251 -19588193 - MIR SINE MIR -122 140 7 246 62 0 0 chr9 122684149 122684181 -19587263 + (T)n Simple_repeat Simple_repeat 1 32 0 330 316 28 45 chr9 122684565 122684742 -19586702 + L2 LINE L2 3025 3198 -74 560 238 87 12 chr9 122684747 122684919 -19586525 + MIR SINE MIR 66 250 -12 200 324 0 14 chr9 122684926 122685000 -19586444 + L2 LINE L2 3185 3257 -15 28 0 0 0 chr9 122685098 122685126 -19586318 + AT_rich Low_complexity Low_complexity 1 28 0 302 259 18 86 chr9 122686158 122686310 -19585134 + MER5A DNA MER1_type 14 158 -20 219 386 0 0 chr9 122686375 122686463 -19584981 + MIR SINE MIR 65 152 -110 2361 82 0 16 chr9 122686470 122686775 -19584669 + AluY SINE Alu 2 301 -10 406 319 86 14 chr9 122686949 122687159 -19584285 + MIR SINE MIR 26 250 -12 277 312 24 32 chr9 122687513 122687638 -19583806 + L3 LINE CR1 715 838 -739 356 250 19 0 chr9 122687824 122687928 -19583516 + MIR SINE MIR 97 202 -60 1128 219 9 0 chr9 122688062 122688281 -19583163 + MER58A DNA MER1_type 1 221 -3 1544 151 16 45 chr9 122688378 122688690 -19582754 + L1MA8 LINE L1 5984 6286 -5 258 262 78 39 chr9 122689186 122689317 -19582127 - MIR3 SINE MIR -42 166 31 227 244 0 0 chr9 122690136 122690181 -19581263 - L2 LINE L2 -10 3303 3259 356 315 56 8 chr9 122690219 122690369 -19581075 + MIR SINE MIR 34 189 -63 354 185 82 74 chr9 122690990 122691125 -19580319 + MIR SINE MIR 81 216 -46 192 169 34 34 chr9 122691624 122691683 -19579761 + MIR SINE MIR 66 124 -84 2247 114 0 22 chr9 122692072 122692388 -19579056 - AluSg SINE Alu 0 310 2 2194 190 33 11 chr9 122692760 122693217 -19578227 + MLT1C LTR MaLR 1 467 0 565 246 16 0 chr9 122694101 122694227 -19577217 + MER94 DNA DNA 5 132 -2 870 233 98 66 chr9 122694508 122694855 -19576589 + MLT1J LTR MaLR 4 361 -150 251 241 172 35 chr9 122695111 122695198 -19576246 + MLT1J LTR MaLR 412 510 -1 25 31 0 0 chr9 122695274 122695306 -19576138 + AT_rich Low_complexity Low_complexity 1 32 0 350 302 60 102 chr9 122695336 122695670 -19575774 - L2 LINE L2 0 3272 2953 722 192 10 91 chr9 122695700 122695908 -19575536 + MLT1D LTR MaLR 2 192 -313 384 279 56 0 chr9 122696309 122696460 -19574984 + MIR SINE MIR 17 178 -68 540 286 86 16 chr9 122697236 122697445 -19573999 + MIR SINE MIR 41 255 -7 252 0 0 0 chr9 122697457 122697485 -19573959 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2211 93 0 4 chr9 122697488 122697767 -19573677 - AluSc SINE Alu -31 278 1 2090 89 11 4 chr9 122697778 122698092 -19573352 - AluY SINE Alu 0 316 1 357 289 50 19 chr9 122698488 122698647 -19572797 + MER117 DNA MER1_type 15 178 -19 332 238 115 8 chr9 122698701 122698823 -19572621 - MIR SINE MIR -23 239 105 1111 242 76 22 chr9 122699347 122700010 -19571434 + MER20B DNA MER1_type 8 741 -42 377 292 118 69 chr9 122700776 122701108 -19570336 + L2 LINE L2 2617 2964 -350 208 339 37 37 chr9 122701238 122701347 -19570097 - L2 LINE L2 -11 3302 3194 245 377 134 0 chr9 122701424 122701647 -19569797 - MIR SINE MIR -8 254 2 2185 125 0 0 chr9 122701910 122702205 -19569239 - AluSx SINE Alu -17 295 1 1204 171 5 5 chr9 122703900 122704099 -19567345 - MLT1B LTR MaLR -4 386 188 1138 127 23 0 chr9 122704232 122704405 -19567039 - MLT1B LTR MaLR -213 177 1 214 238 16 0 chr9 122704685 122704748 -19566696 + L2 LINE L2 2973 3036 -236 377 308 193 26 chr9 122704949 122705296 -19566148 - MLT1I LTR MaLR -4 405 1 1191 320 111 14 chr9 122705473 122706538 -19564906 + L2 LINE L2 1713 2977 -337 182 219 333 0 chr9 122706831 122706927 -19564517 + MIR SINE MIR 123 250 -12 214 225 141 0 chr9 122706952 122707023 -19564421 - L2 LINE L2 0 3272 3192 425 299 167 29 chr9 122707123 122707327 -19564117 + MIR SINE MIR 29 260 -2 811 214 37 27 chr9 122707336 122707523 -19563921 - MIR SINE MIR -5 257 69 198 206 0 95 chr9 122707597 122707660 -19563784 - L2 LINE L2 -188 3084 3028 334 313 0 0 chr9 122708343 122708439 -19563005 + MIR SINE MIR 20 115 -147 369 222 89 11 chr9 122708770 122708860 -19562584 - MER103 DNA DNA -69 97 1 278 315 130 58 chr9 122709070 122709362 -19562082 + L2 LINE L2 2996 3308 -5 184 423 62 0 chr9 122709487 122709584 -19561860 - L2 LINE L2 -4 3268 3166 274 228 0 0 chr9 122709605 122709662 -19561782 + L2 LINE L2 3257 3313 0 303 276 47 79 chr9 122709712 122709926 -19561518 - L2 LINE L2 -236 3036 2830 1278 276 95 8 chr9 122710069 122710457 -19560987 + LTR16A LTR ERVL 29 450 0 744 247 160 18 chr9 122710732 122710951 -19560493 - MIR SINE MIR -11 251 2 288 0 0 0 chr9 122711361 122711393 -19560051 + (CA)n Simple_repeat Simple_repeat 2 33 0 356 244 0 87 chr9 122711512 122711627 -19559817 - MIR SINE MIR -79 183 79 23 33 0 0 chr9 122711844 122711874 -19559570 + AT_rich Low_complexity Low_complexity 1 30 0 359 410 0 0 chr9 122711906 122712072 -19559372 + MIR3 SINE MIR 32 197 -11 331 252 108 9 chr9 122712290 122712401 -19559043 - MIR SINE MIR -76 186 65 285 289 163 36 chr9 122712832 122712998 -19558446 + L2 LINE L2 2606 2792 -522 329 280 68 25 chr9 122713298 122713416 -19558028 + L2 LINE L2 3145 3267 -5 195 291 0 36 chr9 122714392 122714447 -19556997 + L2 LINE L2 3261 3313 0 480 276 261 5 chr9 122714455 122714654 -19556790 - MIR SINE MIR -5 257 8 437 343 82 23 chr9 122714792 122715011 -19556433 + MIR SINE MIR 30 261 -1 2108 111 3 0 chr9 122715085 122715382 -19556062 - AluSq SINE Alu -15 298 1 627 362 55 22 chr9 122715687 122716104 -19555340 - L2 LINE L2 -541 2773 2343 307 333 71 49 chr9 122716537 122716720 -19554724 + MIR SINE MIR 70 256 -6 1090 243 4 16 chr9 122717921 122718164 -19553280 + MIR SINE MIR 4 243 -19 1537 149 129 7 chr9 122718168 122718470 -19552974 + MER44D DNA MER2_type 1 609 0 1811 219 25 68 chr9 122718603 122719086 -19552358 + MLT1C LTR MaLR 1 462 -5 255 79 0 0 chr9 122719606 122719644 -19551800 + (CA)n Simple_repeat Simple_repeat 1 38 0 256 242 45 0 chr9 122720252 122720318 -19551126 - L2 LINE L2 -553 2761 2693 276 245 0 0 chr9 122720388 122720441 -19551003 - MER91 DNA MER1_type 0 190 138 265 213 0 52 chr9 122721158 122721241 -19550203 - MER91 DNA MER1_type -117 73 1 200 241 0 19 chr9 122721276 122721330 -19550114 + MIR SINE MIR 163 215 -47 21 0 0 0 chr9 122721336 122721357 -19550087 + AT_rich Low_complexity Low_complexity 1 21 0 392 310 47 0 chr9 122721475 122721604 -19549840 - MIR3 SINE MIR 0 208 74 1869 105 4 4 chr9 122722213 122722480 -19548964 + AluSq SINE Alu 1 267 -46 401 294 97 127 chr9 122723141 122723307 -19548137 - L2 LINE L2 -8 3264 3095 2542 138 42 24 chr9 122723307 122723444 -19548000 - Tigger2a DNA MER2_type -2274 434 301 1540 126 118 11 chr9 122723444 122723715 -19547729 - AluSg1 SINE Alu -9 300 1 2542 138 42 24 chr9 122723715 122724003 -19547441 - Tigger2a DNA MER2_type -2407 301 1 401 294 97 127 chr9 122724003 122724278 -19547166 - L2 LINE L2 -177 3095 2836 305 273 0 0 chr9 122724881 122724947 -19546497 - L2 LINE L2 -215 3057 2992 201 108 27 27 chr9 122725107 122725144 -19546300 - L2 LINE L2 -557 2757 2721 260 400 64 0 chr9 122725933 122726073 -19545371 - L2 LINE L2 -5 3267 3119 216 233 50 0 chr9 122726192 122726252 -19545192 - L2 LINE L2 -511 2803 2741 217 222 44 0 chr9 122726621 122726666 -19544778 + L2 LINE L2 3225 3271 -1 222 118 0 0 chr9 122726851 122726885 -19544559 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 834 205 0 0 chr9 122726886 122727037 -19544407 + AluJb SINE Alu 128 278 -34 465 34 0 0 chr9 122727037 122727096 -19544348 + (TC)n Simple_repeat Simple_repeat 2 60 0 360 195 69 35 chr9 122727096 122727183 -19544261 + L1MC4 LINE L1 6614 6703 -1339 182 305 112 61 chr9 122727254 122727424 -19544020 + MIR SINE MIR 40 246 -16 189 148 0 0 chr9 122727424 122727451 -19543993 + L2 LINE L2 3265 3291 -22 22 88 0 0 chr9 122727655 122727712 -19543732 + AT_rich Low_complexity Low_complexity 1 57 0 254 325 70 18 chr9 122727948 122728062 -19543382 - L2 LINE L2 -6 3266 3147 339 276 103 40 chr9 122728402 122728576 -19542868 - MIR3 SINE MIR -8 200 16 215 88 29 0 chr9 122728763 122728797 -19542647 + L2 LINE L2 3021 3055 -217 888 268 41 5 chr9 122729649 122729869 -19541575 + MIR SINE MIR 34 261 -1 291 279 139 0 chr9 122730089 122730175 -19541269 - L2 LINE L2 -5 3267 3170 1432 163 14 139 chr9 122731013 122731430 -19540014 + MLT1A1 LTR MaLR 1 365 0 467 289 63 22 chr9 122731851 122732082 -19539362 - MIR SINE MIR -5 257 16 431 301 7 52 chr9 122732266 122732419 -19539025 + L2 LINE L2 3168 3313 0 508 265 118 6 chr9 122732443 122732613 -19538831 + MIR SINE MIR 73 261 -1 271 312 104 15 chr9 122732980 122733114 -19538330 + MIR SINE MIR 19 150 -58 540 303 71 8 chr9 122733159 122733388 -19538056 - MIR SINE MIR 0 262 25 260 242 0 16 chr9 122733740 122733802 -19537642 + MIR SINE MIR 114 174 -88 * 899 267 184 9 chr9 122733784 122734249 -19537195 + L2 LINE L2 2757 3313 0 266 307 93 0 chr9 122734981 122735131 -19536313 - MIR SINE MIR 0 262 99 235 176 15 15 chr9 122735165 122735233 -19536211 + GA-rich Low_complexity Low_complexity 3 70 0 645 291 84 68 chr9 122735323 122735824 -19535620 + LTR33 LTR ERVL 13 521 0 249 217 87 87 chr9 122736205 122736297 -19535147 - MIR SINE MIR -92 170 79 339 278 62 12 chr9 122736326 122736464 -19534980 - MIR SINE MIR -17 245 101 1652 180 17 0 chr9 122736717 122737006 -19534438 - AluJo SINE Alu -18 294 1 319 292 0 10 chr9 122737277 122737373 -19534071 - L1MC4a LINE L1 -1880 5928 5834 253 229 33 16 chr9 122737379 122737440 -19534004 - L2 LINE L2 0 3313 3252 656 297 53 22 chr9 122737467 122737705 -19533739 - MIR SINE MIR -16 246 3 600 260 128 21 chr9 122737810 122738005 -19533439 - L1MC4a LINE L1 -2005 5803 5568 2157 154 45 51 chr9 122738005 122738059 -19533385 - MER65A LTR ERV1 0 445 392 2229 90 0 3 chr9 122738059 122738358 -19533086 + AluY SINE Alu 1 298 -13 2157 154 45 51 chr9 122738358 122738751 -19532693 - MER65A LTR ERV1 -53 392 1 600 260 128 21 chr9 122738751 122738836 -19532608 - L1MC4a LINE L1 -2240 5568 5493 219 342 95 69 chr9 122739884 122739952 -19531492 - L2 LINE L2 0 3272 3207 2038 122 10 0 chr9 122739952 122740256 -19531188 + AluSx SINE Alu 3 309 -3 219 342 95 69 chr9 122740256 122740390 -19531054 - L2 LINE L2 -65 3207 3078 469 143 0 24 chr9 122740390 122740474 -19530970 + L1PA16 LINE L1 6085 6166 0 219 342 95 69 chr9 122740474 122740691 -19530753 - L2 LINE L2 -194 3078 2841 1872 185 45 38 chr9 122740694 122741238 -19530206 + MLT2A2 LTR ERVL 5 554 0 329 272 20 34 chr9 122741281 122741428 -19530016 - L2 LINE L2 -528 2786 2642 808 284 102 21 chr9 122742282 122742518 -19528926 + MIR SINE MIR 2 256 -6 213 260 68 27 chr9 122742524 122742597 -19528847 - L2 LINE L2 -19 3253 3178 566 291 59 36 chr9 122742602 122742960 -19528484 - L2 LINE L2 -382 2932 2567 2063 152 120 11 chr9 122743484 122743866 -19527578 - MSTA LTR MaLR 0 428 5 198 91 0 0 chr9 122744045 122744078 -19527366 + (GA)n Simple_repeat Simple_repeat 1 33 0 1305 208 11 11 chr9 122744465 122744729 -19526715 - MLT1C LTR MaLR 0 467 204 270 95 0 0 chr9 122744731 122744773 -19526671 + (TG)n Simple_repeat Simple_repeat 1 42 0 294 167 123 123 chr9 122744878 122745040 -19526404 - MLT1C LTR MaLR -297 170 9 186 261 234 9 chr9 122745273 122745384 -19526060 - MIR3 SINE MIR -70 138 3 195 324 162 15 chr9 122746069 122746205 -19525239 + MIR SINE MIR 46 201 -61 223 333 0 0 chr9 122746258 122746321 -19525123 + MIR SINE MIR 188 250 -12 1970 153 3 0 chr9 122747111 122747419 -19524025 - AluSx SINE Alu -3 309 1 662 259 154 55 chr9 122747516 122747816 -19523628 - L1ME4a LINE L1 -3 6118 5849 2464 102 11 8 chr9 122747816 122748170 -19523274 + THE1A LTR MaLR 1 355 0 662 259 154 55 chr9 122748170 122748383 -19523061 - L1ME4a LINE L1 -272 5849 5554 1462 162 21 4 chr9 122748386 122748627 -19522817 - L1PA15 LINE L1 0 6165 5921 466 256 71 86 chr9 122748641 122748965 -19522479 - L1PA15 LINE L1 -562 5559 5256 671 209 0 0 chr9 122748991 122749139 -19522305 - FLAM_A SINE Alu 0 153 6 21 0 0 0 chr9 122749177 122749198 -19522246 + AT_rich Low_complexity Low_complexity 1 21 0 1927 98 20 24 chr9 122749520 122749817 -19521627 + AluY SINE Alu 1 296 -15 2779 190 29 39 chr9 122750050 122750712 -19520732 - Looper DNA T2_type -850 708 41 2397 69 0 0 chr9 122750712 122751017 -19520427 + AluSg SINE Alu 1 305 -5 2534 50 0 0 chr9 122751017 122751320 -19520124 + AluY SINE Alu 1 303 -8 777 192 66 18 chr9 122751325 122751492 -19519952 + FAM SINE Alu 1 175 0 2779 190 29 39 chr9 122751492 122751523 -19519921 - Looper DNA T2_type -1520 38 15 1765 162 13 7 chr9 122751555 122751858 -19519586 + AluSx SINE Alu 1 305 -7 1658 163 3 13 chr9 122751998 122752304 -19519140 + AluJb SINE Alu 10 312 0 348 24 0 0 chr9 122753293 122753334 -19518110 + (CA)n Simple_repeat Simple_repeat 1 41 0 305 335 17 39 chr9 122753856 122754035 -19517409 + L2 LINE L2 2593 2767 -547 215 254 55 0 chr9 122754010 122754065 -19517379 - L2 LINE L2 -1 3312 3255 * 344 333 139 29 chr9 122754260 122754605 -19516839 - L2 LINE L2 -338 2976 2594 587 201 14 7 chr9 122755053 122755192 -19516252 + Charlie1 DNA MER1_type 2622 2761 0 1196 227 36 16 chr9 122755264 122755568 -19515876 - MLT1E3 LTR MaLR 0 624 315 777 215 49 0 chr9 122755985 122756129 -19515315 - MER45A DNA AcHobo 0 178 28 234 276 24 110 chr9 122756161 122756288 -19515156 - MIR3 SINE MIR -19 189 74 250 365 66 0 chr9 122756486 122756623 -19514821 + MIR3 SINE MIR 51 196 -12 315 0 0 0 chr9 122756762 122756797 -19514647 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2350 221 65 22 chr9 122757316 122757905 -19513539 - MER90 LTR ERV1 0 614 1 315 404 9 14 chr9 122757954 122758167 -19513277 + L2 LINE L2 2336 2547 -767 208 214 0 131 chr9 122758779 122758863 -19512581 - MER5C DNA MER1_type 0 324 252 232 189 0 220 chr9 122759003 122759162 -19512282 - MER5C DNA MER1_type -200 124 1 1987 169 102 32 chr9 122759352 122759824 -19511620 - MLT1D LTR MaLR 0 505 1 390 321 37 16 chr9 122759879 122760066 -19511378 + MIR SINE MIR 20 210 -52 222 245 0 0 chr9 122760729 122760778 -19510666 - L3 LINE CR1 -105 1472 1424 2231 98 0 30 chr9 122761199 122761504 -19509940 - AluY SINE Alu -15 296 1 225 265 36 12 chr9 122761656 122761739 -19509705 - L3 LINE CR1 -201 1376 1292 483 302 56 6 chr9 122761786 122761965 -19509479 + MIR SINE MIR 48 235 -27 2254 101 3 10 chr9 122762098 122762406 -19509038 + AluSx SINE Alu 1 306 -6 2098 125 0 0 chr9 122762677 122762993 -19508451 + AluSg SINE Alu 1 310 0 2801 118 73 85 chr9 122763066 122763216 -19508228 - L1MA9 LINE L1 0 6312 6162 423 0 0 0 chr9 122763216 122763263 -19508181 + (TG)n Simple_repeat Simple_repeat 2 48 0 2801 118 73 85 chr9 122763263 122763294 -19508150 - L1MA9 LINE L1 -150 6162 6132 2703 105 18 18 chr9 122763294 122763310 -19508134 + L1PA10 LINE L1 5765 5780 -388 2167 123 0 0 chr9 122763310 122763603 -19507841 + AluSx SINE Alu 1 293 -19 2703 105 18 18 chr9 122763603 122763985 -19507459 + L1PA10 LINE L1 5779 6163 -5 2801 118 73 85 chr9 122763985 122764402 -19507042 - L1MA9 LINE L1 -180 6132 5720 444 257 248 46 chr9 122764487 122764705 -19506739 - MLT1H LTR MaLR -16 533 272 309 307 143 0 chr9 122765028 122765217 -19506227 - MIR SINE MIR -1 261 46 1377 181 82 7 chr9 122765219 122765501 -19505943 + AluJb SINE Alu 2 304 -8 192 77 0 0 chr9 122765511 122765537 -19505907 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 205 171 0 24 chr9 122766136 122766177 -19505267 - L2 LINE L2 -12 3301 3262 557 238 20 13 chr9 122766267 122766418 -19505026 + MIR SINE MIR 111 262 0 227 339 112 25 chr9 122766989 122767231 -19504213 - L2 LINE L2 -363 2951 2689 1014 234 9 14 chr9 122767360 122767574 -19503870 + MER58A DNA MER1_type 1 213 -11 352 207 23 23 chr9 122767597 122767684 -19503760 - MIR SINE MIR -109 153 67 465 209 8 78 chr9 122768505 122768634 -19502810 - MIR SINE MIR -77 185 66 351 303 46 7 chr9 122768719 122768871 -19502573 + MIR SINE MIR 91 248 -14 195 235 0 0 chr9 122768922 122768973 -19502471 + GA-rich Low_complexity Low_complexity 3 53 0 22 0 0 0 chr9 122769050 122769072 -19502372 + AT_rich Low_complexity Low_complexity 1 22 0 384 303 90 7 chr9 122770173 122770318 -19501126 + MIR SINE MIR 32 188 -74 371 317 30 6 chr9 122770376 122770543 -19500901 - MIR SINE MIR -24 238 68 480 289 6 9 chr9 122771250 122771407 -19500037 + MIR SINE MIR 42 197 -65 2072 98 29 0 chr9 122771470 122771774 -19499670 + AluSp SINE Alu 1 312 0 2122 138 3 0 chr9 122771795 122772100 -19499344 + AluSx SINE Alu 1 306 -6 221 241 48 48 chr9 122772303 122772386 -19499058 - MIR SINE MIR -72 190 108 184 308 133 7 chr9 122772729 122772872 -19498572 + MIR SINE MIR 98 258 -4 389 229 6 0 chr9 122773211 122773368 -19498076 + CT-rich Low_complexity Low_complexity 1 158 0 208 156 0 22 chr9 122773388 122773433 -19498011 + (CA)n Simple_repeat Simple_repeat 1 44 0 389 282 92 35 chr9 122774786 122775013 -19496431 + MIR SINE MIR 21 260 -2 2382 77 3 0 chr9 122775058 122775345 -19496099 + AluSp SINE Alu 1 288 -25 322 287 191 0 chr9 122775348 122775505 -19495939 + MIR SINE MIR 75 261 -1 203 312 178 13 chr9 122775776 122775933 -19495511 - L2 LINE L2 -339 2975 2793 1363 161 0 0 chr9 122775998 122776228 -19495216 - L1MA4A LINE L1 -5 6298 6069 6563 125 34 18 chr9 122776229 122777340 -19494104 - Tigger3b DNA MER2_type -34 1197 1 202 250 62 0 chr9 122777340 122777404 -19494040 - L2 LINE L2 -779 2535 2468 1140 143 124 138 chr9 122777410 122777780 -19493664 + MLT1A1 LTR MaLR 1 365 0 2457 72 10 7 chr9 122777994 122778300 -19493144 - AluY SINE Alu -4 307 1 273 176 216 61 chr9 122778522 122778670 -19492774 + L1ME4a LINE L1 5949 6119 -2 296 365 21 5 chr9 122778906 122779098 -19492346 - L3 LINE CR1 -717 860 666 745 275 14 5 chr9 122779114 122779325 -19492119 - MIR SINE MIR -1 261 49 742 235 22 17 chr9 122779482 122779661 -19491783 + MIR SINE MIR 81 260 -2 2019 117 7 3 chr9 122779748 122780061 -19491383 + AluSq SINE Alu 1 314 0 1001 249 112 1 chr9 122780785 122781137 -19490307 + MLT1J1 LTR MaLR 5 439 -7 435 296 37 37 chr9 122781162 122781351 -19490093 + MIR3 SINE MIR 14 202 -6 195 297 31 0 chr9 122782104 122782168 -19489276 - L3 LINE CR1 -895 682 617 1473 168 22 183 chr9 122782261 122782342 -19489102 - MLT1D LTR MaLR 0 505 413 2012 138 0 0 chr9 122782342 122782670 -19488774 - AluSx SINE Alu 0 312 6 1473 168 22 183 chr9 122782670 122783190 -19488254 - MLT1D LTR MaLR -92 413 1 239 252 24 126 chr9 122783221 122783348 -19488096 - L2 LINE L2 -20 3252 3139 186 43 0 0 chr9 122783500 122783523 -19487921 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 44206 28 21 1 chr9 122784484 122790512 -19480932 + L1PA2 LINE L1 1 6151 -4 25 0 0 0 chr9 122790515 122790540 -19480904 + AT_rich Low_complexity Low_complexity 1 25 0 2233 118 3 6 chr9 122790770 122791084 -19480360 - AluSq SINE Alu 0 313 1 734 279 53 25 chr9 122791096 122791340 -19480104 - MLT1L LTR MaLR -13 602 352 1072 270 135 38 chr9 122791365 122791861 -19479583 + MLT1H LTR MaLR 1 544 -5 229 234 0 0 chr9 122791933 122791980 -19479464 - MLT1L LTR MaLR -568 47 1 874 222 85 27 chr9 122792660 122792758 -19478686 + L2 LINE L2 2996 3087 -226 2240 110 10 3 chr9 122792758 122793057 -19478387 - AluSx SINE Alu -11 301 1 874 222 85 27 chr9 122793057 122793251 -19478193 + L2 LINE L2 3087 3305 -8 225 65 0 0 chr9 122793253 122793284 -19478160 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 193 200 14 29 chr9 122793708 122793758 -19477686 + CT-rich Low_complexity Low_complexity 1 51 -18 2298 128 31 0 chr9 122793758 122794111 -19477333 - THE1B LTR MaLR 0 364 1 193 200 14 29 chr9 122794111 122794130 -19477314 + CT-rich Low_complexity Low_complexity 51 69 0 444 250 73 7 chr9 122794539 122794675 -19476769 - MIR3 SINE MIR -27 181 37 3020 149 8 4 chr9 122794717 122795200 -19476244 - MER31A LTR ERV1 0 485 1 327 272 26 35 chr9 122796573 122796687 -19474757 - MER81 DNA DNA -1 113 1 7893 23 0 0 chr9 122796983 122797938 -19473506 - L1PA3 LINE L1 0 6155 5202 1061 29 0 15 chr9 122797938 122798074 -19473370 + L1PA3 LINE L1 5078 5211 -935 21 36 0 0 chr9 122798202 122798230 -19473214 + AT_rich Low_complexity Low_complexity 1 28 0 837 234 55 0 chr9 122798787 122798988 -19472456 - MIR SINE MIR -40 222 11 284 244 29 126 chr9 122799970 122800033 -19471411 + L1MC4a LINE L1 5706 5667 -454 2059 156 0 0 chr9 122800033 122800328 -19471116 + AluJb SINE Alu 1 295 -17 284 244 29 126 chr9 122800328 122800474 -19470970 + L1MC4a LINE L1 5666 5825 -296 180 343 60 15 chr9 122801042 122801109 -19470335 - MIR3 SINE MIR -138 70 1 357 278 76 35 chr9 122801261 122801405 -19470039 + L2 LINE L2 3121 3270 -2 260 309 121 13 chr9 122802058 122802207 -19469237 - MIR SINE MIR -18 244 80 1076 305 63 22 chr9 122802232 122802720 -19468724 - L2 LINE L2 0 3313 2806 275 248 109 55 chr9 122803236 122803403 -19468041 + MLT1H LTR MaLR 382 536 -13 252 284 21 53 chr9 122803426 122803521 -19467923 - L2 LINE L2 -30 3242 3151 463 366 38 9 chr9 122803705 122803918 -19467526 + MIR SINE MIR 6 224 -38 255 152 0 0 chr9 122803947 122803993 -19467451 + T-rich Low_complexity Low_complexity 1 46 0 2508 140 27 58 chr9 122803997 122804236 -19467208 - L1MB1 LINE L1 -1 6167 5949 2192 120 3 10 chr9 122804236 122804545 -19466899 - AluSx SINE Alu -3 309 3 2508 140 27 58 chr9 122804545 122804784 -19466660 - L1MB1 LINE L1 -219 5949 5704 2264 188 19 33 chr9 122804784 122805228 -19466216 + L1M3 LINE L1 4869 5317 -851 814 165 65 0 chr9 122805228 122805398 -19466046 + L1MA4 LINE L1 6109 6289 -11 2264 188 19 33 chr9 122805398 122805748 -19465696 + L1M3 LINE L1 5317 5652 -516 842 144 8 0 chr9 122805748 122805880 -19465564 + FLAM_C SINE Alu 1 133 0 2264 188 19 33 chr9 122805880 122805926 -19465518 + L1M3 LINE L1 5652 5697 -471 273 351 82 8 chr9 122805952 122806086 -19465358 + MIR3 SINE MIR 44 187 -21 229 311 0 11 chr9 122806768 122806858 -19464586 - L2 LINE L2 -189 3083 2995 528 258 22 22 chr9 122806938 122807116 -19464328 - MIR SINE MIR -27 235 58 256 333 31 47 chr9 122807409 122807538 -19463906 - L2 LINE L2 -3 3269 3143 272 359 14 21 chr9 122808680 122808822 -19462622 + L3 LINE CR1 808 948 -629 225 333 18 44 chr9 122808958 122809072 -19462372 + MIR SINE MIR 20 130 -132 192 152 0 0 chr9 122809177 122809210 -19462234 + (TGG)n Simple_repeat Simple_repeat 3 35 0 185 189 0 0 chr9 122809535 122809572 -19461872 - L2 LINE L2 -350 2964 2928 269 231 0 15 chr9 122809640 122809705 -19461739 + MIR SINE MIR 185 248 -14 180 308 25 33 chr9 122809737 122809857 -19461587 + L3 LINE CR1 1401 1519 -58 230 79 0 26 chr9 122810489 122810527 -19460917 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 2153 135 0 3 chr9 122810646 122810957 -19460487 + AluSx SINE Alu 1 310 -2 318 281 96 76 chr9 122811084 122811386 -19460058 - L2 LINE L2 0 3313 3006 331 228 16 0 chr9 122811428 122811551 -19459893 + (TTCA)n Simple_repeat Simple_repeat 4 128 0 392 338 114 44 chr9 122811579 122811946 -19459498 + L2 LINE L2 2880 3272 0 417 293 85 5 chr9 122812031 122812219 -19459225 - MIR SINE MIR -32 230 28 511 282 121 5 chr9 122812825 122813031 -19458413 - MIR SINE MIR -13 249 20 474 329 108 18 chr9 122813714 122813991 -19457453 + L2 LINE L2 2551 2852 -462 4175 87 35 26 chr9 122814195 122815205 -19456239 - MER11A LTR ERVK 0 1266 1 524 221 8 23 chr9 122815248 122815379 -19456065 + L2 LINE L2 3179 3307 -6 182 242 0 0 chr9 122816003 122816036 -19455408 + L2 LINE L2 3009 3041 -272 2263 67 3 11 chr9 122816096 122816378 -19455066 + AluY SINE Alu 22 301 -10 922 168 13 0 chr9 122816378 122816533 -19454911 - FAM SINE Alu -18 157 1 378 281 191 5 chr9 122816573 122816772 -19454672 + MIR SINE MIR 11 246 -16 275 188 116 0 chr9 122817149 122817218 -19454226 - L2 LINE L2 -10 3262 3186 336 308 30 8 chr9 122817304 122817437 -19454007 - LTR33 LTR ERVL -8 513 378 768 306 0 19 chr9 122817527 122817743 -19453701 - LTR33 LTR ERVL -309 212 1 458 314 40 22 chr9 122818256 122818479 -19452965 - MIR SINE MIR 0 262 36 1131 192 5 27 chr9 122818490 122818714 -19452730 + MER20 DNA MER1_type 1 219 0 2714 160 20 7 chr9 122818743 122819193 -19452251 + MSTB2 LTR MaLR 2 457 0 594 351 48 18 chr9 122819233 122819566 -19451878 - L2 LINE L2 -469 2845 2503 217 233 0 83 chr9 122819789 122819849 -19451595 - MER91B DNA MER1_type -116 74 20 662 333 37 25 chr9 122819934 122820288 -19451156 + L3 LINE CR1 1205 1562 -15 396 344 70 8 chr9 122820737 122820978 -19450466 + L2 LINE L2 2245 2500 -814 715 263 70 25 chr9 122820983 122821411 -19450033 - LTR16C LTR ERVL 0 491 1 220 235 153 10 chr9 122821491 122821589 -19449855 + L2 LINE L2 2583 2694 -620 529 281 101 38 chr9 122821597 122821835 -19449609 + MIR SINE MIR 9 261 -1 296 327 33 26 chr9 122822223 122822376 -19449068 + MIR SINE MIR 36 189 -73 2204 318 50 12 chr9 122822630 122823476 -19447968 + HERVL LTR ERVL 3565 4442 -1212 343 341 22 11 chr9 122823999 122824178 -19447266 + HERVL LTR ERVL 5178 5358 -406 2328 99 0 17 chr9 122824224 122824526 -19446918 - AluSx SINE Alu -15 297 1 479 294 53 98 chr9 122824766 122824837 -19446607 + LTR16C LTR ERVL 98 171 -320 1981 200 97 27 chr9 122824837 122825321 -19446123 - MLT2B1 LTR ERVL -2 518 1 479 294 53 98 chr9 122825321 122825606 -19445838 + LTR16C LTR ERVL 171 438 -53 398 255 0 0 chr9 122825619 122825717 -19445727 + MIR SINE MIR 90 187 -75 193 315 34 89 chr9 122826801 122826947 -19444497 - MIR3 SINE MIR -65 143 6 187 289 89 11 chr9 122827519 122827609 -19443835 + MIR SINE MIR 57 153 -109 444 296 7 7 chr9 122828087 122828239 -19443205 + MIR3 SINE MIR 30 181 -27 256 258 0 86 chr9 122828280 122828373 -19443071 + L2 LINE L2 3188 3272 0 390 271 131 20 chr9 122828496 122828695 -19442749 + MLT1H LTR MaLR 124 344 -205 258 293 0 0 chr9 122829268 122829384 -19442060 + (TA)n Simple_repeat Simple_repeat 1 116 0 623 232 11 32 chr9 122830134 122830324 -19441120 + MIR SINE MIR 63 248 -14 239 367 39 27 chr9 122830478 122830737 -19440707 - L2 LINE L2 -337 2977 2716 311 228 64 111 chr9 122830847 122831018 -19440426 - MIR SINE MIR 0 262 100 2987 29 3 0 chr9 122831111 122831460 -19439984 - L1PA4 LINE L1 -552 5603 5254 4707 27 4 2 chr9 122831466 122832018 -19439426 + L1PA4 LINE L1 5602 6154 -1 283 264 195 31 chr9 122832090 122832249 -19439195 + MIR3 SINE MIR 17 201 -7 180 176 0 0 chr9 122832870 122832904 -19438540 + A-rich Low_complexity Low_complexity 1 34 0 1954 281 77 37 chr9 122833045 122834389 -19437055 - L2 LINE L2 -3 3310 1066 575 278 185 5 chr9 122834378 122834583 -19436861 + MIR SINE MIR 20 261 -1 * 322 257 64 57 chr9 122835153 122835293 -19436151 - L2 LINE L2 -1821 1493 1353 533 270 49 3 chr9 122835409 122835608 -19435836 + MIR SINE MIR 58 262 0 494 285 152 0 chr9 122836223 122836374 -19435070 + MER5A DNA MER1_type 10 183 -6 367 323 26 31 chr9 122836381 122836573 -19434871 - MIR SINE MIR -52 210 20 200 226 32 32 chr9 122836899 122836961 -19434483 + CT-rich Low_complexity Low_complexity 3 64 0 21 0 0 0 chr9 122838065 122838086 -19433358 + AT_rich Low_complexity Low_complexity 1 21 0 893 217 5 5 chr9 122838104 122838311 -19433133 + L1MA4 LINE L1 6007 6213 -87 491 288 7 0 chr9 122839383 122839529 -19431915 - MER117 DNA MER1_type -50 147 1 296 302 108 16 chr9 122839533 122839662 -19431782 - MIR3 SINE MIR -52 156 16 578 276 74 1 chr9 122839744 122839949 -19431495 + MIR SINE MIR 20 237 -25 1126 261 76 49 chr9 122840602 122841130 -19430314 - MLT1F LTR MaLR 0 542 1 432 286 45 7 chr9 122841446 122841600 -19429844 + MIR SINE MIR 98 257 -5 393 254 95 8 chr9 122841618 122841744 -19429700 - MIR SINE MIR 0 262 126 5182 124 26 22 chr9 122841748 122842602 -19428842 + L1PA16 LINE L1 5309 6165 -1 224 301 14 0 chr9 122842614 122842687 -19428757 - MIR SINE MIR -136 126 53 627 269 96 10 chr9 122842887 122843188 -19428256 + L3 LINE CR1 1186 1512 -65 420 345 49 20 chr9 122843655 122844000 -19427444 + L2 LINE L2 2034 2388 -926 338 281 16 41 chr9 122844017 122844138 -19427306 + MIR3 SINE MIR 82 199 -9 414 271 125 21 chr9 122844214 122844406 -19427038 - MIR SINE MIR 0 262 51 1634 149 18 43 chr9 122845347 122845472 -19425972 + AluJo SINE Alu 14 141 -171 2483 132 70 7 chr9 122845472 122845875 -19425569 + MSTA LTR MaLR 1 428 0 9847 155 23 6 chr9 122845875 122847497 -19423947 + MSTA-int LTR MaLR 1 1651 0 2101 144 83 13 chr9 122847501 122847897 -19423547 + MSTA LTR MaLR 5 428 0 1634 149 18 43 chr9 122847897 122848046 -19423398 + AluJo SINE Alu 143 287 -25 236 264 0 0 chr9 122848237 122848290 -19423154 + MIR SINE MIR 198 250 -12 392 266 175 13 chr9 122848681 122848835 -19422609 - MER5A DNA MER1_type -6 183 5 * 409 257 59 26 chr9 122848833 122848985 -19422459 + MIR SINE MIR 32 188 -74 890 200 25 6 chr9 122849379 122849539 -19421905 + AluJo SINE Alu 1 163 -149 670 265 90 5 chr9 122850377 122850588 -19420856 - MIR SINE MIR 0 262 34 4749 216 26 4 chr9 122850725 122851845 -19419599 - L1M4 LINE L1 -786 5360 4216 * 10848 31 0 0 chr9 122851839 122853107 -19418337 - L1PA4 LINE L1 -1073 5073 3806 6760 67 0 78 chr9 122853107 122854266 -19417178 + L1PA4 LINE L1 5073 6155 0 747 214 90 20 chr9 122854300 122854501 -19416943 - L1M4 LINE L1 -1914 4232 4018 2527 122 19 0 chr9 122854544 122854912 -19416532 + THE1C LTR MaLR 1 375 0 298 335 75 0 chr9 122854941 122855114 -19416330 - MIR SINE MIR -29 233 48 1781 185 3 0 chr9 122855114 122855401 -19416043 + AluJo SINE Alu 1 288 -24 236 295 42 32 chr9 122855566 122855661 -19415783 + MIR SINE MIR 45 140 -68 449 171 37 12 chr9 122855690 122855772 -19415672 + MER81 DNA DNA 21 104 -10 648 254 26 10 chr9 122855819 122856012 -19415432 - L2 LINE L2 -1 3312 3117 1571 201 69 32 chr9 122856025 122856462 -19414982 + L1ME3 LINE L1 5710 6162 0 2862 142 36 0 chr9 122857501 122857974 -19413470 + L1MA8 LINE L1 5765 6254 -37 1075 186 5 5 chr9 122857994 122858209 -19413235 + L1MD1 LINE L1 6027 6241 -1 777 225 71 0 chr9 122858267 122858436 -19413008 + MER3 DNA MER1_type 1 181 -28 1893 184 26 21 chr9 122858436 122858835 -19412609 - MLT1C LTR MaLR 0 467 2 242 167 0 0 chr9 122858835 122858875 -19412569 - MER3 DNA MER1_type -128 81 42 300 273 91 0 chr9 122858963 122859062 -19412382 - L2 LINE L2 -9 3304 3197 792 228 124 92 chr9 122859535 122859961 -19411483 - MLT1H LTR MaLR -2 547 108 810 283 87 17 chr9 122860031 122860331 -19411113 + MLT1I LTR MaLR 89 409 0 424 354 25 70 chr9 122860340 122860524 -19410920 - L2 LINE L2 -253 3019 2847 1216 231 35 40 chr9 122860524 122860900 -19410544 - MLT1A2 LTR MaLR 0 374 1 424 354 25 70 chr9 122860900 122861061 -19410383 - L2 LINE L2 -425 2847 2680 2687 118 0 0 chr9 122861114 122861478 -19409966 - THE1B LTR MaLR 0 364 1 474 259 71 18 chr9 122861814 122861984 -19409460 + MIR SINE MIR 47 225 -37 2250 135 30 28 chr9 122862252 122862615 -19408829 - THE1B LTR MaLR 0 364 1 11084 107 15 6 chr9 122862615 122864181 -19407263 - THE1B-int LTR MaLR 0 1580 1 2304 128 31 19 chr9 122864181 122864541 -19406903 - THE1B LTR MaLR 0 364 1 419 288 20 7 chr9 122865107 122865260 -19406184 + MER103 DNA DNA 10 164 -2 434 240 7 0 chr9 122865536 122865686 -19405758 + (CAT)n Simple_repeat Simple_repeat 3 153 0 224 336 22 82 chr9 122865737 122865871 -19405573 + MIR SINE MIR 19 144 -64 603 182 8 8 chr9 122866041 122866162 -19405282 - MLT1B LTR MaLR -269 121 1 386 261 203 0 chr9 122866240 122866393 -19405051 + MIR SINE MIR 79 262 0 287 376 7 40 chr9 122866455 122866604 -19404840 - MIR3 SINE MIR -29 179 36 270 226 0 32 chr9 122867147 122867209 -19404235 + MIR3 SINE MIR 14 73 -135 225 250 0 0 chr9 122867330 122867374 -19404070 - L2 LINE L2 -18 3254 3211 265 281 124 0 chr9 122868155 122868244 -19403200 - MLT1I LTR MaLR -208 201 102 735 275 32 14 chr9 122868423 122868641 -19402803 + MLT1J2 LTR MaLR 38 259 -191 1350 190 43 0 chr9 122868666 122868924 -19402520 - AluJb SINE Alu -2 310 42 286 180 99 99 chr9 122868947 122869043 -19402401 + MLT1J2 LTR MaLR 318 416 -34 1997 152 36 33 chr9 122869043 122869406 -19402038 - THE1B LTR MaLR 0 364 1 286 180 99 99 chr9 122869406 122869420 -19402024 + MLT1J2 LTR MaLR 415 428 -22 222 336 125 8 chr9 122870514 122870642 -19400802 + MIR SINE MIR 107 249 -13 249 108 0 0 chr9 122870657 122870694 -19400750 + (ATGGTG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr9 122870903 122870924 -19400520 + AT_rich Low_complexity Low_complexity 1 21 0 828 267 120 43 chr9 122871005 122871286 -19400158 + MLT1H LTR MaLR 25 346 -203 2392 67 0 3 chr9 122871286 122871583 -19399861 + AluY SINE Alu 1 296 -15 828 267 120 43 chr9 122871583 122871694 -19399750 + MLT1H LTR MaLR 346 447 -102 470 342 6 6 chr9 122871812 122871970 -19399474 + MER117 DNA MER1_type 40 197 0 204 185 0 0 chr9 122872218 122872272 -19399172 + CT-rich Low_complexity Low_complexity 1 54 0 655 331 120 11 chr9 122872277 122872627 -19398817 + L3 LINE CR1 1054 1441 -136 347 301 49 16 chr9 122873107 122873230 -19398214 + L2 LINE L2 2225 2351 -963 465 318 182 0 chr9 122873298 122873518 -19397926 - MIR SINE MIR -1 261 2 808 295 101 45 chr9 122873523 122874322 -19397122 + L2 LINE L2 2425 3258 -14 339 274 16 117 chr9 122874571 122874819 -19396625 - L2 LINE L2 -183 3089 2867 221 307 0 11 chr9 122875025 122875113 -19396331 + L3b LINE CR1 1110 1196 -387 294 73 0 0 chr9 122875114 122875155 -19396289 + (TG)n Simple_repeat Simple_repeat 2 42 0 312 369 0 9 chr9 122875459 122875570 -19395874 + MIR SINE MIR 21 130 -132 522 294 25 69 chr9 122875862 122876107 -19395337 + MIR SINE MIR 28 261 -1 256 358 11 0 chr9 122876542 122876637 -19394807 + L2 LINE L2 2874 2969 -344 270 310 92 17 chr9 122876903 122877077 -19394367 - L2 LINE L2 -383 2931 2745 * 436 347 141 12 chr9 122877067 122877387 -19394057 + L2 LINE L2 2875 3235 -37 2732 148 32 32 chr9 122877560 122877746 -19393698 + MLT1C LTR MaLR 1 186 -281 405 0 0 0 chr9 122877746 122877791 -19393653 + (CA)n Simple_repeat Simple_repeat 2 46 0 2732 148 32 32 chr9 122877791 122878069 -19393375 + MLT1C LTR MaLR 185 465 -2 398 289 82 30 chr9 122878585 122878720 -19392724 + MIR3 SINE MIR 1 142 -66 2015 112 7 13 chr9 122878734 122879038 -19392406 - AluSx SINE Alu -10 302 1 221 241 38 76 chr9 122879119 122879198 -19392246 + MIR SINE MIR 20 95 -167 393 319 106 61 chr9 122879312 122879821 -19391623 - L2 LINE L2 -7 3265 2709 350 269 19 9 chr9 122880231 122880339 -19391105 - MIR3 SINE MIR -22 186 78 937 247 18 22 chr9 122880599 122880822 -19390622 + MER58A DNA MER1_type 1 222 -2 464 270 195 11 chr9 122880842 122881016 -19390428 + MIR SINE MIR 23 228 -34 228 237 0 17 chr9 122881016 122881075 -19390369 + GA-rich Low_complexity Low_complexity 1 58 0 731 298 12 12 chr9 122882074 122882332 -19389112 - MIR SINE MIR 0 262 5 468 331 0 30 chr9 122882419 122882585 -19388859 - MIR SINE MIR -73 189 29 282 269 46 46 chr9 122882836 122882944 -19388500 + L2 LINE L2 3161 3268 -4 * 318 311 17 31 chr9 122882928 122883074 -19388370 - MIR3 SINE MIR -63 145 14 330 26 0 0 chr9 122883143 122883182 -19388262 + (CA)n Simple_repeat Simple_repeat 1 39 0 503 253 119 76 chr9 122883255 122883583 -19387861 + L2 LINE L2 2930 3271 -1 2708 178 78 19 chr9 122883742 122884277 -19387167 - MLT1F1 LTR MaLR 0 567 1 252 149 0 0 chr9 122884284 122884331 -19387113 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 678 58 0 0 chr9 122884332 122884419 -19387025 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 340 265 198 26 chr9 122885370 122885551 -19385893 - MIR SINE MIR -13 249 42 234 362 113 0 chr9 122886126 122886267 -19385177 + MIR SINE MIR 36 192 -70 1170 299 31 5 chr9 122887079 122887463 -19383981 + MLT1I LTR MaLR 16 409 0 22 0 0 0 chr9 122887519 122887541 -19383903 + AT_rich Low_complexity Low_complexity 1 22 0 184 373 76 22 chr9 122888098 122888323 -19383121 - MIR SINE MIR -19 243 7 223 305 96 10 chr9 122888431 122888546 -19382898 + MIR SINE MIR 27 159 -49 368 322 38 73 chr9 122888557 122888871 -19382573 - L2 LINE L2 -127 3186 2884 445 176 0 0 chr9 122888878 122888963 -19382481 + L1MA8 LINE L1 6196 6280 -11 2456 123 25 74 chr9 122888963 122889411 -19382033 + MSTB LTR MaLR 1 426 0 63 0 0 0 chr9 122889413 122889476 -19381968 + AT_rich Low_complexity Low_complexity 1 63 0 806 265 103 22 chr9 122889776 122890126 -19381318 - MLT1J2 LTR MaLR -58 392 44 285 310 70 58 chr9 122890316 122890487 -19380957 + MIR3 SINE MIR 33 205 -3 414 312 60 32 chr9 122891489 122891861 -19379583 + L2 LINE L2 2678 3052 -261 402 283 53 43 chr9 122892001 122892188 -19379256 + MIR SINE MIR 9 197 -65 572 288 13 58 chr9 122892288 122892514 -19378930 + MIR SINE MIR 40 255 -7 198 103 0 0 chr9 122892645 122892674 -19378770 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 189 0 0 0 chr9 122892677 122892698 -19378746 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 595 175 0 0 chr9 122892753 122892850 -19378594 + FLAM_A SINE Alu 1 97 -45 198 267 0 0 chr9 122892886 122892976 -19378468 + (TTGG)n Simple_repeat Simple_repeat 1 90 0 408 143 0 0 chr9 122893400 122893470 -19377974 + (CA)n Simple_repeat Simple_repeat 2 71 0 2369 47 0 20 chr9 122893640 122893941 -19377503 + AluY SINE Alu 1 295 -16 457 350 53 18 chr9 122894028 122894254 -19377190 - L3 LINE CR1 -21 1556 1323 404 285 191 1 chr9 122894602 122894792 -19376652 + MIR SINE MIR 26 250 -12 2126 163 112 48 chr9 122895069 122895402 -19376042 - MLT2B2 LTR ERVL 0 515 144 2102 115 10 0 chr9 122895402 122895706 -19375738 - AluSx SINE Alu -5 307 1 2126 163 112 48 chr9 122895706 122895826 -19375618 - MLT2B2 LTR ERVL -371 144 33 427 341 8 0 chr9 122895985 122896117 -19375327 + MIR SINE MIR 84 216 -46 463 56 0 169 chr9 122896139 122896228 -19375216 - MADE1 DNA Mariner -6 74 1 748 286 19 45 chr9 122896317 122896583 -19374861 + MIR SINE MIR 2 260 -2 464 291 126 17 chr9 122896631 122896806 -19374638 + MIR SINE MIR 54 247 -15 188 309 0 0 chr9 122896822 122896864 -19374580 + MIR SINE MIR 82 123 -85 528 16 0 0 chr9 122897145 122897206 -19374238 + (TG)n Simple_repeat Simple_repeat 2 62 0 1317 174 4 3 chr9 122897673 122897933 -19373511 - MER7A DNA MER2_type -1 345 1 753 293 108 15 chr9 122898573 122898908 -19372536 + MLT1J2 LTR MaLR 52 417 -33 241 307 214 14 chr9 122899154 122899369 -19372075 - MIR SINE MIR 0 262 5 194 308 138 31 chr9 122901265 122901489 -19369955 + L2 LINE L2 2487 2734 -580 193 279 0 0 chr9 122901642 122901685 -19369759 + L2 LINE L2 3267 3309 -4 3040 87 2 5 chr9 122901686 122902100 -19369344 + L1PB1 LINE L1 5738 6150 -1 509 302 78 0 chr9 122902143 122902322 -19369122 + MIR SINE MIR 20 212 -50 447 242 5 143 chr9 122902820 122902914 -19368530 - MIR3 SINE MIR -1 207 160 2071 109 0 22 chr9 122902914 122903227 -19368217 + AluSx SINE Alu 1 306 -6 447 242 5 143 chr9 122903227 122903355 -19368089 - MIR3 SINE MIR -48 160 16 457 275 128 0 chr9 122903687 122903836 -19367608 + MIR SINE MIR 87 254 -8 408 373 70 15 chr9 122904785 122904986 -19366458 - L2 LINE L2 -85 3187 2976 579 304 22 43 chr9 122905076 122905352 -19366092 - MLT2E LTR ERVL 0 628 359 499 231 50 25 chr9 122905366 122905487 -19365957 - MLT2E LTR ERVL -471 157 34 523 248 158 0 chr9 122906797 122906930 -19364514 + MIR SINE MIR 13 166 -96 6610 72 26 3 chr9 122906948 122908288 -19363156 - L1PA8A LINE L1 -10 6121 4771 17370 113 9 2 chr9 122908288 122911039 -19360405 + L1PA8A LINE L1 1993 4765 -1381 733 259 22 0 chr9 122911184 122911369 -19360075 - MIR SINE MIR -73 189 1 267 262 78 0 chr9 122911648 122911751 -19359693 + MIR SINE MIR 82 192 -70 2129 145 34 47 chr9 122911925 122912305 -19359139 - THE1C LTR MaLR 0 375 1 952 274 31 17 chr9 122912500 122912792 -19358652 - LTR16C LTR ERVL 0 491 196 287 184 0 0 chr9 122912824 122912873 -19358571 - LTR16C LTR ERVL -370 121 73 267 337 71 0 chr9 122913394 122913492 -19357952 - L2 LINE L2 -1 3271 3167 305 331 0 53 chr9 122913801 122913952 -19357492 + L2 LINE L2 2955 3097 -175 396 315 94 33 chr9 122913996 122914209 -19357235 - MLT1J LTR MaLR -4 507 282 777 223 205 0 chr9 122914275 122914504 -19356940 + MLT1J2 LTR MaLR 116 391 -59 747 223 71 20 chr9 122914528 122914885 -19356559 + LTR16A LTR ERVL 1 450 0 782 249 169 8 chr9 122914901 122915162 -19356282 - MLT1J LTR MaLR -205 306 4 579 251 86 58 chr9 122915193 122915436 -19356008 - MIR SINE MIR -11 251 2 432 271 34 0 chr9 122915436 122915550 -19355894 + L2 LINE L2 3141 3258 -14 376 300 138 14 chr9 122915560 122915843 -19355601 - L2 LINE L2 -830 2484 2167 581 235 75 38 chr9 122916967 122917180 -19354264 - LTR45 LTR ERV1 -1 524 304 194 302 41 6 chr9 122917507 122917676 -19353768 + L2 LINE L2 2486 2660 -654 356 330 87 42 chr9 122917773 122918197 -19353247 + L2 LINE L2 2827 3269 -3 450 214 119 0 chr9 122918758 122918884 -19352560 - MIR SINE MIR -108 154 14 283 251 37 0 chr9 122919362 122919460 -19351984 - MIR SINE MIR -64 144 42 433 314 14 7 chr9 122919948 122920088 -19351356 - MIR3 SINE MIR -24 184 44 214 343 114 0 chr9 122920087 122920192 -19351252 + L2 LINE L2 3155 3271 -1 * 297 0 0 0 chr9 122920304 122920337 -19351107 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 288 57 45 chr9 122920524 122920701 -19350743 - L2 LINE L2 -31 3282 3104 314 224 197 48 chr9 122920742 122920889 -19350555 - LTR16A1 LTR ERVL -1 456 288 354 290 19 9 chr9 122920912 122921019 -19350425 - LTR16A1 LTR ERVL -293 164 57 547 325 0 18 chr9 122921054 122921220 -19350224 - L2 LINE L2 -259 3054 2892 271 221 70 35 chr9 122922079 122922165 -19349279 - MIR3 SINE MIR -105 103 15 1888 167 0 0 chr9 122922704 122922992 -19348452 + AluJb SINE Alu 1 288 -24 213 374 24 0 chr9 122923301 122923424 -19348020 + MIR SINE MIR 65 190 -72 188 215 54 65 chr9 122923456 122923549 -19347895 - MIR3 SINE MIR -1 207 116 732 281 54 58 chr9 122923865 122924308 -19347136 - L1ME4a LINE L1 -219 5902 5458 604 278 106 39 chr9 122924307 122924796 -19346648 - L1ME4a LINE L1 -2 6119 5598 * 260 261 99 27 chr9 122925323 122925434 -19346010 + LTR67 LTR ERVL 425 543 -14 2124 152 71 2 chr9 122925434 122925829 -19345615 + L1MA8 LINE L1 5864 6285 -6 877 217 32 5 chr9 122925983 122926200 -19345244 + MIR SINE MIR 2 224 -38 359 305 99 0 chr9 122926286 122926417 -19345027 - MIR SINE MIR -72 190 47 432 294 77 0 chr9 122926591 122926761 -19344683 - MIR SINE MIR -11 251 69 479 238 135 11 chr9 122927656 122927841 -19343603 - L2 LINE L2 0 3313 3106 407 291 51 25 chr9 122928513 122928709 -19342735 + L2 LINE L2 2647 2847 -467 3568 63 4 0 chr9 122928731 122929189 -19342255 - L1PA7 LINE L1 0 6154 5695 2396 46 0 0 chr9 122929189 122929473 -19341971 + L1PA7 LINE L1 5402 5685 -469 2296 214 91 20 chr9 122929749 122930284 -19341160 - L1ME1 LINE L1 -5 6161 5580 2305 93 0 13 chr9 122930284 122930585 -19340859 + AluY SINE Alu 1 297 -14 2296 214 91 20 chr9 122930585 122930634 -19340810 - L1ME1 LINE L1 -586 5580 5536 449 159 159 37 chr9 122930692 122930799 -19340645 + L2 LINE L2 3193 3312 -1 380 274 13 52 chr9 122930794 122930947 -19340497 - MIR SINE MIR -65 197 51 * 1810 182 32 30 chr9 122931216 122931499 -19339945 - MER89 LTR ERV1 0 559 273 2598 128 62 51 chr9 122931499 122931660 -19339784 + MER101 LTR ERV1 1 159 -315 1550 156 0 0 chr9 122931660 122931898 -19339546 - AluSg/x SINE Alu -5 307 70 2598 128 62 51 chr9 122931898 122932205 -19339239 + MER101 LTR ERV1 159 474 0 1810 182 32 30 chr9 122932205 122932290 -19339154 - MER89 LTR ERV1 -286 273 190 436 129 71 0 chr9 122932267 122932337 -19339107 - MER89 LTR ERV1 -481 78 4 * 258 95 0 0 chr9 122932486 122932528 -19338916 + (TG)n Simple_repeat Simple_repeat 1 42 0 519 220 150 12 chr9 122933018 122933191 -19338253 - MIR SINE MIR -26 236 40 185 274 16 0 chr9 122933336 122933398 -19338046 + MIR SINE MIR 89 151 -111 634 271 27 5 chr9 122933530 122933746 -19337698 + MIR SINE MIR 34 256 -6 185 238 79 32 chr9 122933940 122934003 -19337441 + L2 LINE L2 3204 3269 -3 358 251 169 32 chr9 122934193 122934211 -19337233 + MIR SINE MIR 14 28 -234 2539 69 0 0 chr9 122934211 122934515 -19336929 + AluY SINE Alu 1 304 -7 358 251 169 32 chr9 122934515 122934715 -19336729 + MIR SINE MIR 28 262 0 234 217 110 39 chr9 122934867 122934970 -19336474 - MIR SINE MIR -59 149 37 502 280 85 16 chr9 122935205 122935394 -19336050 + MIR SINE MIR 60 261 -1 276 77 0 0 chr9 122935792 122935831 -19335613 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1041 126 46 3 chr9 122936518 122936699 -19334745 - L1PA13 LINE L1 -318 5845 5679 * 2309 102 6 3 chr9 122936677 122937001 -19334443 + L1PA13 LINE L1 5838 6162 -1 284 346 70 40 chr9 122937058 122937385 -19334059 + L2 LINE L2 2918 3254 -18 2887 225 60 52 chr9 122937618 122938437 -19333007 + L1MC4a LINE L1 6448 7272 -536 505 338 38 5 chr9 122938476 122938689 -19332755 + MIR SINE MIR 42 261 -1 205 156 0 0 chr9 122939703 122939735 -19331709 + CT-rich Low_complexity Low_complexity 6 37 0 304 277 16 49 chr9 122940232 122940416 -19331028 + L1ME4a LINE L1 5726 5903 -218 1398 208 55 76 chr9 122940677 122941152 -19330292 + MLT1C LTR MaLR 3 467 0 239 229 0 0 chr9 122941934 122941982 -19329462 + L3 LINE CR1 1517 1564 -13 270 334 113 29 chr9 122942207 122942862 -19328582 - L2 LINE L2 -341 2973 2264 284 250 0 39 chr9 122943580 122943684 -19327760 + GA-rich Low_complexity Low_complexity 2 101 0 793 326 36 39 chr9 122944240 122944438 -19327006 - L2 LINE L2 -4 3309 3112 4741 66 24 2 chr9 122944438 122944703 -19326741 + L1PB2 LINE L1 5514 5772 -379 510 17 0 0 chr9 122944703 122944762 -19326682 + (TA)n Simple_repeat Simple_repeat 1 59 0 4741 66 24 2 chr9 122944762 122945120 -19326324 + L1PB2 LINE L1 5772 6151 0 793 326 36 39 chr9 122945120 122945492 -19325952 - L2 LINE L2 -201 3112 2740 507 276 143 57 chr9 122946226 122946866 -19324578 + L2 LINE L2 2623 3312 -1 254 233 89 22 chr9 122946956 122947046 -19324398 - MIR3 SINE MIR -49 159 64 414 253 0 11 chr9 122947695 122947782 -19323662 + MER91A DNA MER1_type 94 179 -17 206 277 46 0 chr9 122948222 122948287 -19323157 + L2 LINE L2 3246 3313 0 566 228 39 0 chr9 122948753 122948880 -19322564 - MER94 DNA DNA 0 134 3 400 239 72 22 chr9 122949565 122949703 -19321741 - MIR SINE MIR -71 191 47 269 280 159 111 chr9 122950624 122950895 -19320549 + L2 LINE L2 2985 3268 -4 180 0 0 0 chr9 122951058 122951078 -19320366 + (A)n Simple_repeat Simple_repeat 1 20 0 980 295 70 43 chr9 122951256 122951670 -19319774 + LTR16A LTR ERVL 17 441 -9 4864 119 15 0 chr9 122952038 122952752 -19318692 + L1MB1 LINE L1 5443 6167 -1 304 219 88 56 chr9 122952886 122952993 -19318451 - MIR SINE MIR -58 150 29 290 344 33 0 chr9 122953041 122953163 -19318281 - MER5A DNA MER1_type -7 182 57 201 330 213 5 chr9 122953219 122953407 -19318037 - L3 LINE CR1 -4 1573 1347 294 235 143 8 chr9 122953671 122953790 -19317654 + MIR SINE MIR 7 141 -121 3625 38 0 0 chr9 122953791 122954215 -19317229 + L1PA3 LINE L1 5732 6155 0 1794 88 16 28 chr9 122954271 122954522 -19316922 + AluSg SINE Alu 45 292 -18 736 293 78 35 chr9 122955023 122955447 -19315997 + L2 LINE L2 2854 3295 -18 237 232 36 0 chr9 122955634 122955690 -19315754 - L2 LINE L2 -826 2488 2431 370 252 0 25 chr9 122955813 122955932 -19315512 + MLT1H LTR MaLR 47 162 -387 2020 231 57 31 chr9 122956230 122956805 -19314639 + MLT1G LTR MaLR 1 590 0 338 276 97 28 chr9 122956835 122956980 -19314464 - MER117 DNA MER1_type -39 158 4 253 294 149 42 chr9 122957162 122957451 -19313993 + L2 LINE L2 2927 3246 -67 187 296 45 105 chr9 122958371 122958770 -19312674 + L2 LINE L2 2813 3187 -85 * 335 256 60 17 chr9 122958766 122958883 -19312561 + MIR SINE MIR 132 253 -9 874 179 96 4 chr9 122959040 122959269 -19312175 - MER20B DNA MER1_type -18 765 516 1515 266 47 29 chr9 122959391 122959617 -19311827 - MER20B DNA MER1_type -288 495 275 961 90 6 34 chr9 122959617 122959794 -19311650 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 1515 266 47 29 chr9 122959794 122960052 -19311392 - MER20B DNA MER1_type -508 275 2 514 222 111 0 chr9 122960431 122960575 -19310869 + MIR3 SINE MIR 37 196 -12 423 325 106 30 chr9 122961399 122962146 -19309298 - L2 LINE L2 0 3313 2469 2435 97 128 16 chr9 122962480 122962863 -19308581 - MSTA LTR MaLR -2 426 1 233 222 19 0 chr9 122962995 122963049 -19308395 + (CA)n Simple_repeat Simple_repeat 2 56 0 202 297 148 20 chr9 122963830 122963931 -19307513 + MIR SINE MIR 17 130 -78 302 261 76 25 chr9 122963966 122964085 -19307359 - L2 LINE L2 -46 3226 3102 1652 276 164 18 chr9 122964281 122965163 -19306281 + L2 LINE L2 33 1043 -2271 1329 199 206 74 chr9 122965211 122965553 -19305891 + MLT1G1 LTR MaLR 3 411 -156 1387 204 134 43 chr9 122965553 122966014 -19305430 - MLT1D LTR MaLR 0 505 3 1329 199 206 74 chr9 122966014 122966195 -19305249 + MLT1G1 LTR MaLR 411 567 0 3023 241 155 36 chr9 122966195 122966995 -19304449 + L2 LINE L2 1062 1765 -1549 1582 227 58 24 chr9 122966995 122967445 -19303999 - MLT1C LTR MaLR -2 465 1 3023 241 155 36 chr9 122967445 122968020 -19303424 + L2 LINE L2 1765 2601 -713 1063 227 0 5 chr9 122968038 122968236 -19303208 + MER58A DNA MER1_type 28 224 0 453 320 146 14 chr9 122968236 122968848 -19302596 + L2 LINE L2 2605 3311 -2 639 153 0 0 chr9 122969085 122969183 -19302261 + L1MB3 LINE L1 5735 5832 -351 960 79 0 58 chr9 122969183 122969322 -19302122 + AluSg1 SINE Alu 1 131 -178 474 294 8 0 chr9 122970597 122970723 -19300721 - MIR3 SINE MIR -20 188 62 406 316 99 6 chr9 122971006 122971177 -19300267 + L3 LINE CR1 1385 1571 -6 243 175 0 0 chr9 122972524 122972564 -19298880 - MIR SINE MIR -139 69 30 782 265 9 23 chr9 122972612 122972827 -19298617 - MIR SINE MIR -3 259 48 240 188 10 168 chr9 122972919 122973020 -19298424 - L2 LINE L2 -181 3091 3007 247 272 61 83 chr9 122973032 122973260 -19298184 - MIR SINE MIR -9 253 31 256 241 218 8 chr9 122973362 122973495 -19297949 + MIR3 SINE MIR 36 196 -12 3662 161 60 16 chr9 122974577 122974612 -19296832 + L1MB3 LINE L1 5444 5476 -707 207 0 0 0 chr9 122974612 122974635 -19296809 + (CA)n Simple_repeat Simple_repeat 2 24 0 3662 161 60 16 chr9 122974635 122975301 -19296143 + L1MB3 LINE L1 5476 6176 -7 2381 123 5 80 chr9 122975427 122975875 -19295569 - L1PA13 LINE L1 -7 6156 5743 1422 135 0 4 chr9 122975875 122976141 -19295303 + L1P4 LINE L1 5230 5494 -680 380 277 46 15 chr9 122976155 122976285 -19295159 + L1MC5 LINE L1 7790 7923 -38 1760 115 7 30 chr9 122976309 122976520 -19294924 + L1P4 LINE L1 5476 5681 -484 2450 83 0 7 chr9 122976520 122976822 -19294622 + AluSx SINE Alu 1 300 -12 1760 115 7 30 chr9 122976822 122976880 -19294564 + L1P4 LINE L1 5681 5739 -426 765 233 167 90 chr9 122977407 122977874 -19293570 - MLT1J LTR MaLR -8 503 1 447 324 62 0 chr9 122978135 122978311 -19293133 + MIR SINE MIR 52 238 -24 726 270 31 9 chr9 122978870 122979092 -19292352 - MIR SINE MIR -3 259 33 200 281 163 30 chr9 122979119 122979254 -19292190 + MIR3 SINE MIR 45 197 -11 336 299 62 0 chr9 122980762 122980859 -19290585 - L2 LINE L2 -1 3312 3210 258 234 6 108 chr9 122981298 122981456 -19289988 + MLT1K LTR MaLR 447 588 0 744 276 86 24 chr9 122981699 122982214 -19289230 - L2 LINE L2 0 3313 2762 257 286 0 0 chr9 122982245 122982308 -19289136 - MIR SINE MIR -59 149 87 653 284 0 6 chr9 122982527 122982703 -19288741 + MER5A DNA MER1_type 1 175 -14 1886 271 22 7 chr9 122982845 122983370 -19288074 - L1ME3 LINE L1 -15 6147 5583 278 276 0 0 chr9 122983463 122983539 -19287905 + MIR SINE MIR 74 149 -59 1654 152 126 29 chr9 122984278 122984620 -19286824 - THE1C LTR MaLR 0 375 1 273 206 239 0 chr9 122984800 122984892 -19286552 - L2 LINE L2 -7 3306 3193 679 295 124 47 chr9 122985089 122985456 -19285988 - LTR16A LTR ERVL 0 450 43 203 185 56 37 chr9 122985474 122985528 -19285916 + L2 LINE L2 3205 3259 -13 316 304 30 30 chr9 122986259 122986394 -19285050 - MIR3 SINE MIR -29 179 45 290 143 16 0 chr9 122987899 122987962 -19283482 + (CA)n Simple_repeat Simple_repeat 1 64 0 246 328 86 0 chr9 122988066 122988194 -19283250 - MIR3 SINE MIR -3 205 67 207 324 226 0 chr9 122988334 122988436 -19283008 + MIR SINE MIR 127 251 -11 217 333 49 16 chr9 122988513 122988636 -19282808 - L2 LINE L2 -5 3267 3141 299 260 73 16 chr9 122991099 122991222 -19280222 + MIR3 SINE MIR 69 198 -10 713 219 24 0 chr9 122991338 122991507 -19279937 - MER5B DNA MER1_type -5 173 1 956 143 8 0 chr9 122991758 122991891 -19279553 + AluSq/x SINE Alu 2 135 -177 2374 80 0 17 chr9 122991891 122992222 -19279222 + AluY SINE Alu 1 326 0 738 241 20 20 chr9 122992282 122992477 -19278967 - MIR SINE MIR -34 228 34 852 169 19 0 chr9 122992853 122993013 -19278431 + MER5B DNA MER1_type 15 177 -1 1562 143 0 4 chr9 122993716 122993960 -19277484 - L1PB3 LINE L1 -1 6153 5911 188 227 91 0 chr9 122994661 122994705 -19276739 + L2 LINE L2 3001 3048 -224 206 240 40 0 chr9 122994780 122994830 -19276614 + L2 LINE L2 3262 3313 0 625 180 12 0 chr9 122994832 122994999 -19276445 + (TGGA)n Simple_repeat Simple_repeat 4 172 0 251 298 29 19 chr9 122995514 122995618 -19275826 - MIR SINE MIR 0 262 158 2417 99 0 0 chr9 122995630 122995932 -19275512 - AluSq SINE Alu -6 307 6 395 245 42 42 chr9 122995937 122996080 -19275364 + MIR SINE MIR 119 261 -1 312 302 175 0 chr9 122996081 122996207 -19275237 - MIR SINE MIR -106 156 9 381 236 45 0 chr9 122996514 122996603 -19274841 - MIR SINE MIR -89 173 81 1347 142 14 0 chr9 122996606 122996818 -19274626 - L1PB1 LINE L1 -250 5901 5687 1138 192 9 9 chr9 122996818 122997046 -19274398 + L1PB1 LINE L1 5920 6148 -3 1401 196 25 0 chr9 122997120 122997406 -19274038 + L1 LINE L1 4727 5019 -1127 195 42 0 0 chr9 122997743 122997767 -19273677 + (CA)n Simple_repeat Simple_repeat 1 24 0 206 45 45 45 chr9 122997793 122997837 -19273607 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 623 192 96 14 chr9 122997839 122997985 -19273459 + L1MD2 LINE L1 6173 6330 -29 538 313 116 24 chr9 122998028 122998363 -19273081 + L1ME3A LINE L1 5293 5658 -2150 294 265 127 89 chr9 122998430 122998754 -19272690 + L1ME3A LINE L1 5603 5938 -232 250 254 32 16 chr9 122998971 122999097 -19272347 + (TA)n Simple_repeat Simple_repeat 1 128 0 22547 70 8 8 chr9 122999128 123001036 -19270408 - L1PA6 LINE L1 -1 6153 4244 2349 110 0 3 chr9 123001036 123001346 -19270098 - AluY SINE Alu -2 309 1 22547 70 8 8 chr9 123001346 123003244 -19268200 - L1PA6 LINE L1 -1910 4244 2347 7356 49 1 2 chr9 123003244 123004298 -19267146 + L1PA5 LINE L1 5102 6154 0 11177 119 19 31 chr9 123004311 123006115 -19265329 - L1PA6 LINE L1 -3784 2362 580 666 250 81 37 chr9 123006185 123006321 -19265123 + L1MC4a LINE L1 5616 5745 -2063 2265 119 73 14 chr9 123006321 123006665 -19264779 + THE1B LTR MaLR 1 364 0 666 250 81 37 chr9 123006665 123006824 -19264620 + L1MC4a LINE L1 5745 5924 -1884 219 295 39 0 chr9 123007319 123007397 -19264047 - L2 LINE L2 -220 3052 2972 474 242 75 0 chr9 123007514 123007634 -19263810 - MIR SINE MIR -119 143 15 203 264 209 0 chr9 123007656 123007785 -19263659 - L2 LINE L2 -456 2858 2703 225 0 0 0 chr9 123007827 123007852 -19263592 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1934 160 27 0 chr9 123008057 123008351 -19263093 + AluJb SINE Alu 1 302 -10 291 212 81 40 chr9 123008684 123008783 -19262661 - MLT1I LTR MaLR 0 409 307 438 307 44 36 chr9 123008897 123009137 -19262307 - MLT1H LTR MaLR -154 257 50 450 279 51 13 chr9 123009199 123009357 -19262087 + MIR SINE MIR 69 232 -30 789 167 102 105 chr9 123009418 123009741 -19261703 - MER5C DNA MER1_type 0 324 3 671 276 144 58 chr9 123009927 123010320 -19261124 - MLT1G1 LTR MaLR 0 595 139 2193 112 0 3 chr9 123010320 123010630 -19260814 + AluSx SINE Alu 1 309 0 671 276 144 58 chr9 123010630 123010783 -19260661 - MLT1G1 LTR MaLR -456 139 1 734 165 73 6 chr9 123011673 123011837 -19259607 + L1MC3 LINE L1 7609 7783 -2 198 0 0 0 chr9 123011840 123011862 -19259582 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1230 40 0 13 chr9 123011877 123012028 -19259416 - L1PA5 LINE L1 -2 6152 6004 463 313 69 56 chr9 123012330 123012563 -19258881 + MLT1K LTR MaLR 10 245 -343 753 275 52 5 chr9 123012649 123012860 -19258584 + MLT1K LTR MaLR 365 585 -3 22 56 0 0 chr9 123013536 123013572 -19257872 + AT_rich Low_complexity Low_complexity 1 36 0 274 305 47 62 chr9 123013608 123014134 -19257310 - L2 LINE L2 -167 3105 2591 588 268 92 58 chr9 123014646 123015057 -19256387 - MLT1H LTR MaLR 0 549 125 449 198 21 0 chr9 123016150 123016246 -19255198 + L2 LINE L2 3136 3233 -39 198 362 21 11 chr9 123016254 123016348 -19255096 + MIR3 SINE MIR 67 161 -47 591 286 24 33 chr9 123016727 123016937 -19254507 + MIR SINE MIR 22 229 -33 632 201 0 153 chr9 123016939 123017019 -19254425 - MER45A DNA AcHobo -1403 178 142 2151 137 0 9 chr9 123017019 123017334 -19254110 + AluSq SINE Alu 1 312 -1 632 201 0 153 chr9 123017334 123017442 -19254002 - MER45A DNA AcHobo -1439 142 19 2120 127 3 0 chr9 123018148 123018448 -19252996 + AluSx SINE Alu 1 301 -11 272 329 15 66 chr9 123018556 123018693 -19252751 - MLT1I LTR MaLR -123 286 157 420 348 38 9 chr9 123018811 123019021 -19252423 + MIR SINE MIR 34 249 -13 1955 107 0 11 chr9 123019040 123019302 -19252142 - AluSc SINE Alu -18 291 33 340 287 147 0 chr9 123020058 123020215 -19251229 + MIR SINE MIR 55 234 -28 1844 200 85 57 chr9 123020295 123020801 -19250643 - MLT2B1 LTR ERVL 0 520 1 433 276 41 7 chr9 123021135 123021280 -19250164 - MLT1L LTR MaLR 0 615 466 1643 201 10 0 chr9 123021681 123021969 -19249475 + AluJb SINE Alu 1 291 -21 236 163 0 0 chr9 123022593 123022636 -19248808 + L2 LINE L2 3230 3272 0 885 140 0 0 chr9 123022722 123022900 -19248544 + (TTGG)n Simple_repeat Simple_repeat 2 179 0 331 268 268 24 chr9 123023151 123023360 -19248084 + MIR SINE MIR 2 261 -1 2471 68 14 0 chr9 123024920 123025214 -19246230 - AluY SINE Alu -13 298 1 213 294 159 0 chr9 123025239 123025365 -19246079 + L2 LINE L2 3168 3313 0 559 263 53 5 chr9 123025877 123026086 -19245358 + MIR SINE MIR 31 249 -13 280 350 80 0 chr9 123026130 123026230 -19245214 + L2 LINE L2 3159 3266 -6 201 74 0 0 chr9 123026902 123026929 -19244515 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 1607 245 75 37 chr9 123026990 123027525 -19243919 + MLT1H1 LTR MaLR 1 555 0 1905 106 75 31 chr9 123027713 123028005 -19243439 + AluSx SINE Alu 1 305 -7 442 281 30 35 chr9 123028018 123028249 -19243195 + L1ME4a LINE L1 5352 5581 -540 1361 199 103 30 chr9 123028270 123028676 -19242768 + L1ME4a LINE L1 5644 6079 -42 563 268 18 24 chr9 123029196 123029364 -19242080 - MIR3 SINE MIR -4 204 38 268 220 10 90 chr9 123029433 123029533 -19241911 + L2 LINE L2 3222 3313 0 572 184 19 13 chr9 123029533 123029691 -19241753 + (TGGA)n Simple_repeat Simple_repeat 2 160 0 466 259 63 78 chr9 123029701 123029956 -19241488 + MIR SINE MIR 2 252 -10 2110 226 49 88 chr9 123030720 123030801 -19240643 + L1M4 LINE L1 2838 2921 -3225 1607 187 0 57 chr9 123030801 123031132 -19240312 + AluJo SINE Alu 1 312 0 2110 226 49 88 chr9 123031132 123032015 -19239429 + L1M4 LINE L1 2921 3764 -2382 2552 78 0 0 chr9 123032133 123032440 -19239004 - AluSg SINE Alu -3 307 1 200 257 18 18 chr9 123033512 123033574 -19237870 + MIR SINE MIR 91 146 -62 792 25 0 49 chr9 123033641 123033763 -19237681 + (TCTCCC)n Simple_repeat Simple_repeat 2 117 0 7688 53 21 8 chr9 123033763 123035190 -19236254 + SVA Other Other 58 1386 0 356 263 30 141 chr9 123036379 123036559 -19234885 + L2 LINE L2 2836 3034 -238 2199 197 42 9 chr9 123036559 123037011 -19234433 + MLT1C LTR MaLR 1 467 0 356 263 30 141 chr9 123037011 123037321 -19234123 + L2 LINE L2 3034 3272 0 297 228 24 49 chr9 123037674 123037797 -19233647 + L1MC5 LINE L1 7403 7522 -439 443 274 120 50 chr9 123038261 123038520 -19232924 - L2 LINE L2 -384 2930 2654 743 201 166 39 chr9 123038582 123038890 -19232554 + L1MC5 LINE L1 7403 7749 -212 2488 67 0 3 chr9 123038890 123039190 -19232254 - AluY SINE Alu -12 299 1 371 267 0 0 chr9 123039211 123039301 -19232143 + MIR SINE MIR 65 154 -108 198 211 0 6 chr9 123039306 123039344 -19232100 + L2 LINE L2 3216 3294 -19 188 229 0 66 chr9 123040557 123040618 -19230826 + L2 LINE L2 339 395 -2919 209 278 64 7 chr9 123041117 123041229 -19230215 - MIR SINE MIR -62 146 31 2418 181 111 25 chr9 123041479 123042067 -19229377 + MLT1E2 LTR MaLR 1 626 0 340 351 78 35 chr9 123042340 123042762 -19228682 + L1ME LINE L1 2062 2501 -3895 331 335 49 0 chr9 123042800 123042964 -19228480 + L1ME LINE L1 2516 2687 -3528 1416 281 89 49 chr9 123043330 123044343 -19227101 + L1ME LINE L1 3863 4915 -1300 229 191 15 44 chr9 123044346 123044414 -19227030 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 2755 123 17 0 chr9 123044524 123044932 -19226512 - LTR43 LTR ERV1 -80 522 108 346 299 17 45 chr9 123045660 123045837 -19225607 + L1MC5 LINE L1 7746 7917 -44 1003 255 78 13 chr9 123045851 123046420 -19225024 + L1ME LINE L1 5102 5702 -533 305 271 201 18 chr9 123046458 123046787 -19224657 - L1MC/D LINE L1 -700 5454 5267 316 291 60 75 chr9 123046812 123047145 -19224299 - L1MC/D LINE L1 -912 5234 4907 374 306 109 47 chr9 123047222 123047497 -19223947 - L1MC/D LINE L1 -1355 4791 4500 592 124 8 108 chr9 123047521 123047650 -19223794 + MLT1C LTR MaLR 1 116 -274 953 174 46 36 chr9 123047660 123047855 -19223589 + MLT1C LTR MaLR 271 467 0 467 268 56 22 chr9 123047912 123048091 -19223353 + MIR SINE MIR 34 218 -44 193 308 146 5 chr9 123048168 123048353 -19223091 - L2 LINE L2 -874 2440 2230 3543 127 31 6 chr9 123048645 123049158 -19222286 - MER1A DNA MER1_type -1 526 1 491 309 21 46 chr9 123049533 123049633 -19221811 + MIR SINE MIR 8 102 -160 1284 196 48 85 chr9 123049633 123050010 -19221434 - MLT1A1 LTR MaLR 0 365 3 491 309 21 46 chr9 123050010 123050103 -19221341 + MIR SINE MIR 102 196 -66 182 283 0 0 chr9 123050373 123050433 -19221011 + MIR SINE MIR 184 243 -19 374 306 115 35 chr9 123051749 123052010 -19219434 + L2 LINE L2 2213 2494 -820 719 275 65 32 chr9 123052623 123052870 -19218574 + MIR SINE MIR 8 262 0 279 253 22 33 chr9 123053231 123053322 -19218122 + GA-rich Low_complexity Low_complexity 1 90 0 486 288 6 6 chr9 123053768 123053931 -19217513 - MIR SINE MIR -63 199 37 227 311 92 17 chr9 123054153 123054391 -19217053 - L2 LINE L2 -450 2864 2609 241 190 260 0 chr9 123054391 123054491 -19216953 - MIR SINE MIR -12 250 125 629 281 46 51 chr9 123055743 123056073 -19215371 + L2 LINE L2 2804 3222 -91 243 61 0 0 chr9 123056073 123056106 -19215338 + (TG)n Simple_repeat Simple_repeat 2 34 0 629 281 46 51 chr9 123056106 123056198 -19215246 + L2 LINE L2 3222 3313 0 327 332 20 15 chr9 123056707 123056909 -19214535 - L2 LINE L2 -925 2389 2187 1915 148 0 33 chr9 123058604 123058908 -19212536 - AluJb SINE Alu -18 294 1 1332 204 86 28 chr9 123058956 123059280 -19212164 - MER2 DNA MER2_type 0 344 2 260 215 43 43 chr9 123059966 123060059 -19211385 - LTR33A LTR ERVL -11 512 420 206 245 0 0 chr9 123060713 123060766 -19210678 + (TTA)n Simple_repeat Simple_repeat 3 55 0 250 292 0 0 chr9 123061178 123061243 -19210201 + MLT1I LTR MaLR 82 146 -263 319 237 44 97 chr9 123061354 123061468 -19209976 + MLT1G1 LTR MaLR 436 583 -12 384 273 180 0 chr9 123061710 123061860 -19209584 - MIR SINE MIR -13 249 73 2267 119 3 0 chr9 123061872 123062182 -19209262 + AluSq SINE Alu 1 311 -2 214 373 127 0 chr9 123062829 123062963 -19208481 - MIR3 SINE MIR -47 161 11 26 30 0 0 chr9 123063376 123063409 -19208035 + AT_rich Low_complexity Low_complexity 1 33 0 316 222 133 0 chr9 123063474 123063564 -19207880 + L1MC4 LINE L1 6604 6705 -1337 302 277 34 34 chr9 123064466 123064585 -19206859 - MIR SINE MIR -133 129 11 1594 161 0 0 chr9 123064651 123064930 -19206514 + L1MB5 LINE L1 5589 5867 -317 758 119 25 8 chr9 123064953 123065071 -19206373 + L1MC1 LINE L1 6209 6328 -5 2056 144 38 3 chr9 123065083 123065429 -19206015 - MLT1B LTR MaLR 0 390 33 1025 179 150 0 chr9 123065438 123065678 -19205766 + L1MB5 LINE L1 5899 6174 0 268 366 44 27 chr9 123066214 123066397 -19205047 + L2 LINE L2 3082 3267 -5 2362 187 49 26 chr9 123066912 123067220 -19204224 - MER87 LTR ERV1 0 541 215 1093 102 0 6 chr9 123067220 123067377 -19204067 - L1PA13 LINE L1 -6 6157 6002 2362 187 49 26 chr9 123067377 123067597 -19203847 - MER87 LTR ERV1 -326 215 1 185 316 55 83 chr9 123068062 123068315 -19203129 + L2 LINE L2 2851 3096 -176 244 262 19 10 chr9 123068482 123068585 -19202859 + GA-rich Low_complexity Low_complexity 1 104 0 265 271 112 65 chr9 123069213 123069320 -19202124 - MIR SINE MIR -75 133 6 210 286 0 0 chr9 123069456 123069498 -19201946 + L2 LINE L2 3211 3252 -20 237 356 42 8 chr9 123069523 123069641 -19201803 + MIR SINE MIR 16 137 -71 217 288 75 0 chr9 123069684 123069764 -19201680 - MIR SINE MIR -5 257 172 2632 171 106 7 chr9 123070403 123070999 -19200445 + L1MB4 LINE L1 5526 6180 0 2526 71 0 3 chr9 123071731 123072041 -19199403 + AluY SINE Alu 1 309 -2 1922 187 50 84 chr9 123072768 123073199 -19198245 - MLT1D LTR MaLR 0 505 94 2050 137 3 0 chr9 123073199 123073491 -19197953 + AluSx SINE Alu 3 295 -17 1922 187 50 84 chr9 123073491 123073582 -19197862 - MLT1D LTR MaLR -411 94 1 410 331 0 15 chr9 123074029 123074159 -19197285 - MIR SINE MIR -100 162 35 325 372 37 40 chr9 123074277 123074573 -19196871 - L2 LINE L2 -123 3149 2855 817 287 25 29 chr9 123074709 123074953 -19196491 - MLT1I LTR MaLR -69 340 98 22 0 0 0 chr9 123075260 123075282 -19196162 + AT_rich Low_complexity Low_complexity 1 22 0 259 186 53 177 chr9 123075810 123075876 -19195568 + MER5A DNA MER1_type 8 56 -133 2584 69 0 0 chr9 123075876 123076180 -19195264 + AluSc SINE Alu 1 304 -5 259 186 53 177 chr9 123076180 123076226 -19195218 + MER5A DNA MER1_type 56 106 -83 4922 88 9 18 chr9 123076255 123076777 -19194667 - L1PA13 LINE L1 -5 6158 5642 3110 108 5 9 chr9 123076777 123077205 -19194239 + MSTA LTR MaLR 3 428 0 4922 88 9 18 chr9 123077205 123077368 -19194076 - L1PA13 LINE L1 -521 5642 5479 655 279 11 16 chr9 123077429 123077612 -19193832 + MER5A DNA MER1_type 8 189 0 282 306 38 18 chr9 123077860 123077977 -19193467 + MIR SINE MIR 16 135 -73 223 247 118 36 chr9 123079084 123079195 -19192249 + MIR SINE MIR 35 152 -76 2319 117 3 0 chr9 123079347 123079656 -19191788 - AluSx SINE Alu -2 310 1 551 324 110 25 chr9 123079779 123080060 -19191384 - L2 LINE L2 -49 3223 2919 197 389 16 24 chr9 123080150 123080276 -19191168 - L2 LINE L2 -575 2739 2615 820 199 18 28 chr9 123080944 123081145 -19190299 - MIR SINE MIR -20 242 46 282 285 100 7 chr9 123081228 123081342 -19190102 + MIR SINE MIR 30 152 -63 294 320 22 17 chr9 123082158 123082339 -19189105 - L1ME LINE L1 -308 5813 5632 1480 168 89 20 chr9 123082399 123082787 -19188657 + L1MB8 LINE L1 5769 6178 0 454 252 77 47 chr9 123083524 123083693 -19187751 + MIR SINE MIR 25 192 -55 307 264 40 81 chr9 123083715 123083863 -19187581 + MER5A DNA MER1_type 24 165 -24 * 317 311 13 29 chr9 123083721 123083887 -19187557 - MER5A DNA MER1_type -16 167 2 266 244 252 22 chr9 123083986 123084121 -19187323 + MIR SINE MIR 96 261 -1 2242 109 3 16 chr9 123084131 123084444 -19187000 - AluSg SINE Alu -1 309 1 572 74 0 0 chr9 123084455 123084536 -19186908 - tRNA-Leu-CTG tRNA tRNA -5 81 1 351 65 0 0 chr9 123084807 123084853 -19186591 + (CA)n Simple_repeat Simple_repeat 1 46 0 407 289 78 29 chr9 123084853 123085089 -19186355 - L1MC4a LINE L1 -206 5915 5678 369 303 174 7 chr9 123085111 123085266 -19186178 - MIR SINE MIR -19 243 63 778 276 152 16 chr9 123085369 123085738 -19185706 + MLT1H LTR MaLR 131 549 0 231 281 94 10 chr9 123085974 123086070 -19185374 - MIR SINE MIR -68 140 37 220 289 13 26 chr9 123087360 123087436 -19184008 + MIR SINE MIR 118 192 -70 602 173 93 13 chr9 123087680 123087830 -19183614 - MIR SINE MIR -2 260 99 185 301 75 20 chr9 123088336 123088482 -19182962 - L2 LINE L2 -226 3046 2893 383 302 167 5 chr9 123089348 123089570 -19181874 + L2 LINE L2 2094 2351 -963 393 226 198 0 chr9 123089586 123089692 -19181752 - MIR SINE MIR -13 249 123 1968 168 0 0 chr9 123089704 123089995 -19181449 - AluSx SINE Alu -21 291 1 1722 180 0 27 chr9 123090313 123090608 -19180836 + AluJo SINE Alu 5 291 -21 2089 124 7 3 chr9 123090614 123090912 -19180532 + AluSx SINE Alu 1 299 -13 186 333 32 16 chr9 123091417 123091480 -19179964 - L2 LINE L2 -4 3268 3205 514 250 7 40 chr9 123091764 123091916 -19179528 + MLT1A2 LTR MaLR 1 147 -227 658 176 0 0 chr9 123091928 123092036 -19179408 - AluJb SINE Alu -22 290 183 1932 129 36 33 chr9 123092041 123092404 -19179040 - THE1C LTR MaLR -11 364 1 313 187 27 53 chr9 123092404 123092460 -19178984 - AluSp SINE Alu -114 189 134 911 149 0 8 chr9 123092460 123092594 -19178850 - AluJo/FLAM SINE Alu -169 133 1 313 187 27 53 chr9 123092594 123092609 -19178835 - AluSp SINE Alu -169 134 120 * 886 179 46 71 chr9 123092596 123092836 -19178608 + MLT1A2 LTR MaLR 141 374 0 192 258 97 0 chr9 123092843 123092905 -19178539 + L2 LINE L2 3156 3223 -49 282 56 0 0 chr9 123093359 123093395 -19178049 + (GA)n Simple_repeat Simple_repeat 1 36 0 221 279 25 57 chr9 123093453 123093575 -19177869 - L2 LINE L2 -49 3264 3147 522 229 166 19 chr9 123093678 123093835 -19177609 + MER5A DNA MER1_type 9 188 -1 3581 105 4 52 chr9 123093975 123094021 -19177423 + L1PA10 LINE L1 5643 5690 -478 2502 87 0 0 chr9 123094021 123094332 -19177112 + AluY SINE Alu 1 311 0 3581 105 4 52 chr9 123094332 123094838 -19176606 + L1PA10 LINE L1 5690 6168 0 1974 122 87 14 chr9 123094838 123095183 -19176261 - MSTA LTR MaLR -58 370 1 260 225 34 34 chr9 123095184 123095273 -19176171 + L1MC5 LINE L1 7840 7928 -33 2195 109 3 3 chr9 123095592 123095886 -19175558 + AluSq SINE Alu 14 307 -6 1950 189 57 39 chr9 123095972 123096464 -19174980 - MLT1D LTR MaLR -4 501 1 594 170 1 0 chr9 123096506 123096618 -19174826 + L1MB5 LINE L1 5555 5667 -511 2840 28 0 12 chr9 123096618 123096939 -19174505 + AluYb8 SINE Alu 1 317 -1 1082 147 0 0 chr9 123096951 123097101 -19174343 + AluJb SINE Alu 156 305 -7 2612 184 4 2 chr9 123097102 123097580 -19173864 + L1MB5 LINE L1 5660 6138 -36 504 235 62 19 chr9 123097883 123098045 -19173399 + HAL1b LINE L1 747 915 -433 274 237 74 30 chr9 123098101 123098236 -19173208 + HAL1b LINE L1 793 933 -415 344 286 31 22 chr9 123098318 123098543 -19172901 + MLT1K LTR MaLR 104 398 -190 1856 168 0 3 chr9 123098634 123098919 -19172525 - AluJb SINE Alu -23 289 6 205 189 0 0 chr9 123099587 123099624 -19171820 + CT-rich Low_complexity Low_complexity 2 38 0 2211 106 0 34 chr9 123099691 123100012 -19171432 + AluSg SINE Alu 1 310 0 723 219 152 75 chr9 123100191 123100566 -19170878 - L1ME4a LINE L1 0 6121 5718 415 320 107 7 chr9 123101250 123101400 -19170044 + MIR3 SINE MIR 23 187 -21 646 246 18 0 chr9 123101705 123101876 -19169568 + L1MC4 LINE L1 6912 7085 -957 1028 231 132 13 chr9 123101889 123102261 -19169183 + L1MC4 LINE L1 7238 7653 -389 279 206 27 27 chr9 123102275 123102348 -19169096 + L1MC4 LINE L1 7587 7659 -383 647 215 102 11 chr9 123102427 123102604 -19168840 + L1MC4 LINE L1 7586 7778 -264 956 209 221 18 chr9 123102616 123103046 -19168398 + MLT1F1 LTR MaLR 1 567 0 356 219 31 11 chr9 123103053 123103237 -19168207 + L1MC4 LINE L1 7786 7995 0 199 333 12 0 chr9 123103362 123103443 -19168001 + L2 LINE L2 2723 2804 -510 364 313 168 20 chr9 123103538 123103835 -19167609 + L2 LINE L2 2909 3249 -23 22 35 0 0 chr9 123104151 123104180 -19167264 + AT_rich Low_complexity Low_complexity 1 29 0 277 240 171 0 chr9 123104522 123104651 -19166793 - MIR SINE MIR -80 182 32 1835 136 17 36 chr9 123105033 123105334 -19166110 + AluJb SINE Alu 14 308 -4 524 247 156 61 chr9 123106183 123106543 -19164901 - L2 LINE L2 -75 3238 2845 1824 166 151 15 chr9 123106821 123107232 -19164212 - MLT1C LTR MaLR 0 467 1 369 309 74 12 chr9 123108071 123108233 -19163211 + MIR SINE MIR 37 208 -54 187 180 280 0 chr9 123108788 123108838 -19162606 + L2 LINE L2 3203 3266 -6 318 352 43 12 chr9 123108928 123109090 -19162354 + MER5B DNA MER1_type 7 173 -5 471 272 56 39 chr9 123109106 123109286 -19162158 + MIR3 SINE MIR 9 191 -17 202 266 47 0 chr9 123109511 123109575 -19161869 + MIR3 SINE MIR 112 178 -30 510 322 75 59 chr9 123109986 123110208 -19161236 - L3 LINE CR1 -38 1539 1322 2179 184 55 31 chr9 123110208 123110698 -19160746 - MLT1D LTR MaLR -3 502 1 510 322 75 59 chr9 123110698 123111106 -19160338 - L3 LINE CR1 -255 1322 899 220 264 104 28 chr9 123111168 123111274 -19160170 - L2 LINE L2 -239 3033 2920 309 258 47 68 chr9 123111440 123111630 -19159814 - L2 LINE L2 -569 2745 2560 207 0 0 0 chr9 123111634 123111657 -19159787 + (GGAGA)n Simple_repeat Simple_repeat 1 23 0 202 228 0 70 chr9 123111800 123111857 -19159587 - MIR SINE MIR -113 149 97 513 0 0 0 chr9 123112545 123112602 -19158842 + (CA)n Simple_repeat Simple_repeat 1 57 0 440 274 61 69 chr9 123112853 123113098 -19158346 + L2 LINE L2 2931 3173 -99 235 214 162 32 chr9 123113946 123114073 -19157371 + MIR SINE MIR 41 185 -67 248 301 54 0 chr9 123114209 123114302 -19157142 - L2 LINE L2 -16 3297 3200 450 286 148 33 chr9 123114482 123114901 -19156543 - L2 LINE L2 -446 2868 2402 201 238 0 0 chr9 123115524 123115566 -19155878 + MIR3 SINE MIR 119 160 -48 1750 177 39 3 chr9 123116458 123116763 -19154681 + LTR32 LTR ERVL 20 335 -136 893 167 6 13 chr9 123116822 123116978 -19154466 + LTR32 LTR ERVL 317 471 0 335 170 0 0 chr9 123118834 123118887 -19152557 - L2 LINE L2 0 3313 3261 281 242 183 42 chr9 123120913 123121033 -19150411 - MIR SINE MIR -70 192 56 275 212 96 62 chr9 123121564 123121679 -19149765 - MIR SINE MIR -101 161 43 237 293 131 10 chr9 123122615 123122714 -19148730 + L2 LINE L2 3139 3249 -23 184 351 52 26 chr9 123123071 123123148 -19148296 - L2 LINE L2 -127 3145 3067 * 193 260 0 0 chr9 123123125 123123175 -19148269 + MIR SINE MIR 86 135 -127 213 313 98 48 chr9 123123364 123123727 -19147717 + L2 LINE L2 2828 3313 0 801 247 140 42 chr9 123124034 123124528 -19146916 + L1MC4a LINE L1 5314 5855 -1953 214 256 108 60 chr9 123125642 123125811 -19145633 + MIR SINE MIR 30 197 -17 242 269 65 37 chr9 123125844 123125952 -19145492 + L2 LINE L2 2985 3095 -177 439 325 13 19 chr9 123126254 123126411 -19145033 + MIR SINE MIR 50 205 -57 706 218 42 125 chr9 123126575 123126778 -19144666 - L1MC5 LINE L1 -47 7914 7696 794 152 8 23 chr9 123126778 123126910 -19144534 - FLAM_C SINE Alu -3 130 1 706 218 42 125 chr9 123126910 123127151 -19144293 - L1MC5 LINE L1 -265 7696 7509 862 153 123 12 chr9 123127151 123127321 -19144123 - MER5A DNA MER1_type 0 189 1 706 218 42 125 chr9 123127321 123127348 -19144096 - L1MC5 LINE L1 -452 7509 7481 843 271 136 47 chr9 123127360 123128066 -19143378 - L1MC4a LINE L1 -987 6821 6053 21 0 0 0 chr9 123128102 123128123 -19143321 + AT_rich Low_complexity Low_complexity 1 21 0 421 324 120 36 chr9 123128777 123129086 -19142358 - L2 LINE L2 -76 3196 2862 235 348 54 0 chr9 123129802 123129894 -19141550 + MIR SINE MIR 50 146 -62 1323 171 8 8 chr9 123130775 123131020 -19140424 + AluJo SINE Alu 68 312 0 2045 113 3 0 chr9 123131081 123131374 -19140070 + AluSx SINE Alu 1 294 -18 1862 133 13 32 chr9 123131389 123131705 -19139739 + AluJb SINE Alu 2 311 -1 313 250 11 34 chr9 123131751 123131839 -19139605 + L1ME LINE L1 5553 5638 -483 181 325 89 45 chr9 123132734 123132891 -19138553 - L2 LINE L2 -93 3179 3016 290 320 71 19 chr9 123134255 123134449 -19136995 - MIR3 SINE MIR -50 212 8 445 294 27 7 chr9 123135692 123135838 -19135606 + MIR3 SINE MIR 19 167 -41 23 33 0 0 chr9 123137076 123137106 -19134338 + AT_rich Low_complexity Low_complexity 1 30 0 244 273 18 0 chr9 123137215 123137270 -19134174 + L2 LINE L2 3255 3310 -3 418 345 53 20 chr9 123137302 123137548 -19133896 - MIR SINE MIR -1 261 8 515 230 212 23 chr9 123138008 123138482 -19132962 + L2 LINE L2 2723 3283 -30 292 309 29 26 chr9 123139168 123139324 -19132120 + MIR SINE MIR 14 171 -37 472 259 217 0 chr9 123139451 123139594 -19131850 - MIR SINE MIR -55 207 34 388 299 115 76 chr9 123139627 123140035 -19131409 + L2 LINE L2 2849 3272 0 423 278 80 7 chr9 123140111 123140262 -19131182 + MIR SINE MIR 51 212 -50 335 294 113 61 chr9 123140448 123140679 -19130765 - MIR SINE MIR 0 262 20 453 345 76 3 chr9 123141125 123141415 -19130029 + L2 LINE L2 2254 2564 -750 540 244 76 28 chr9 123141779 123142115 -19129329 + MLT1L LTR MaLR 196 615 0 339 261 52 61 chr9 123142299 123142414 -19129030 + MIR SINE MIR 27 140 -122 238 20 98 0 chr9 123143188 123143239 -19128205 + GA-rich Low_complexity Low_complexity 2 57 0 293 298 197 27 chr9 123143523 123143711 -19127733 - MIR SINE MIR -23 239 20 279 269 111 18 chr9 123143750 123143921 -19127523 + L1MC4a LINE L1 5818 6004 -1804 206 281 11 56 chr9 123144308 123144397 -19127047 - L2 LINE L2 -12 3260 3176 285 277 73 68 chr9 123145077 123145283 -19126161 + L1ME4a LINE L1 5542 5748 -373 1919 157 70 26 chr9 123145410 123145793 -19125651 - MER21B LTR ERV1 -11 852 453 310 282 57 105 chr9 123145797 123146006 -19125438 + L1ME4a LINE L1 5901 6099 -22 630 304 62 11 chr9 123147175 123147448 -19123996 + L1ME4a LINE L1 5601 5887 -234 1745 182 57 20 chr9 123148329 123148681 -19122763 + MLT1A1 LTR MaLR 1 365 0 432 282 115 11 chr9 123149643 123149817 -19121627 - MIR SINE MIR -43 219 28 217 309 93 10 chr9 123151089 123151186 -19120258 - L2 LINE L2 0 3272 3168 229 304 221 37 chr9 123151191 123151408 -19120036 + MIR SINE MIR 1 257 -5 723 254 52 35 chr9 123152532 123152819 -19118625 - L1ME4a LINE L1 -218 5903 5612 260 324 48 9 chr9 123153440 123153545 -19117899 - MIR SINE MIR -52 210 102 1854 136 24 10 chr9 123154081 123154376 -19117068 - AluSx SINE Alu -13 299 1 295 297 89 76 chr9 123155167 123155403 -19116041 - L2 LINE L2 -16 3256 3018 4568 153 38 41 chr9 123155572 123156450 -19114994 - MER4D LTR ERV1 0 862 5 1293 91 162 0 chr9 123156556 123156753 -19114691 + MER30 DNA MER1_type 1 229 -1 290 233 243 26 chr9 123156761 123156915 -19114529 - MIR SINE MIR -71 191 6 22968 29 0 0 chr9 123157167 123160656 -19110788 + L1PA3 LINE L1 2670 6155 0 561 264 249 5 chr9 123160705 123160906 -19110538 + MIR SINE MIR 6 255 -7 596 232 47 26 chr9 123161424 123161614 -19109830 + L1ME LINE L1 5629 5822 -299 204 270 101 34 chr9 123162602 123162691 -19108753 + MIR SINE MIR 50 144 -118 601 311 52 28 chr9 123162729 123162977 -19108467 - MIR SINE MIR 0 262 9 275 247 65 32 chr9 123163001 123163094 -19108350 + MIR SINE MIR 107 202 -60 296 346 0 0 chr9 123163137 123163238 -19108206 + MIR SINE MIR 39 139 -69 970 271 92 68 chr9 123163268 123164018 -19107426 - L2 LINE L2 0 3313 2546 651 241 80 66 chr9 123164040 123164314 -19107130 - L2 LINE L2 -1234 2080 1803 3835 219 73 51 chr9 123164360 123164851 -19106593 + L1MC4 LINE L1 6118 6597 -1445 288 0 0 0 chr9 123164851 123164883 -19106561 + (CA)n Simple_repeat Simple_repeat 2 33 0 3835 219 73 51 chr9 123164883 123166137 -19105307 + L1MC4 LINE L1 6597 7992 -50 26 0 0 0 chr9 123166147 123166173 -19105271 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr9 123166310 123166335 -19105109 + AT_rich Low_complexity Low_complexity 1 25 0 228 266 129 16 chr9 123167352 123167476 -19103968 - MIR SINE MIR -5 257 120 353 314 23 35 chr9 123167878 123168050 -19103394 + MIR SINE MIR 23 192 -70 184 216 20 0 chr9 123169782 123169833 -19101611 + L2 LINE L2 2921 2972 -341 220 314 78 10 chr9 123170059 123170161 -19101283 + L2 LINE L2 3141 3249 -23 182 246 14 72 chr9 123170318 123170387 -19101057 - L3b LINE CR1 -192 1391 1327 189 244 81 23 chr9 123170437 123170523 -19100921 + MIR SINE MIR 89 179 -83 333 262 134 44 chr9 123170641 123170842 -19100602 + MIR SINE MIR 34 235 -27 221 341 68 0 chr9 123171216 123171304 -19100140 + L2 LINE L2 3164 3257 -15 423 288 16 0 chr9 123171512 123171637 -19099807 - MIR SINE MIR -102 160 34 226 292 115 0 chr9 123172654 123172750 -19098694 + L2 LINE L2 3126 3232 -40 425 260 89 18 chr9 123172808 123172977 -19098467 + MIR SINE MIR 66 246 -16 879 124 8 8 chr9 123173517 123173646 -19097798 + AluJo SINE Alu 7 135 -177 390 311 49 0 chr9 123173788 123173910 -19097534 + L2 LINE L2 3144 3271 -1 382 373 37 0 chr9 123174118 123174335 -19097109 + MIR SINE MIR 17 241 -21 847 296 45 29 chr9 123174374 123174749 -19096695 + L2 LINE L2 226 606 -2708 1523 258 159 19 chr9 123174784 123175405 -19096039 + L2 LINE L2 1741 2448 -866 1183 196 27 9 chr9 123175419 123175638 -19095806 - MER58A DNA MER1_type 0 224 2 1843 98 109 0 chr9 123175640 123175905 -19095539 - AluSq SINE Alu -19 294 1 645 249 97 43 chr9 123175918 123176476 -19094968 + L2 LINE L2 2699 3295 -18 623 313 74 70 chr9 123177966 123178928 -19092516 + L2 LINE L2 2301 3267 -5 4788 140 52 33 chr9 123179010 123179911 -19091533 + L1MB8 LINE L1 5254 6171 -7 246 267 164 26 chr9 123180128 123180244 -19091200 - MIR SINE MIR -109 153 22 209 231 0 0 chr9 123180664 123180703 -19090741 - L2 LINE L2 -24 3248 3210 196 267 80 0 chr9 123180700 123180775 -19090669 - MIR SINE MIR -162 100 20 * 22 35 0 0 chr9 123181318 123181347 -19090097 + AT_rich Low_complexity Low_complexity 1 29 0 827 197 53 61 chr9 123182238 123182466 -19088978 - MIR SINE MIR -30 232 7 1676 188 7 16 chr9 123182519 123182827 -19088617 - AluJo SINE Alu -7 305 1 323 353 25 20 chr9 123183497 123183656 -19087788 + MIR SINE MIR 32 194 -68 195 0 86 0 chr9 123183656 123183691 -19087753 + (TA)n Simple_repeat Simple_repeat 1 38 0 323 353 25 20 chr9 123183691 123183735 -19087709 + MIR SINE MIR 194 236 -26 297 0 0 0 chr9 123184043 123184076 -19087368 + (TC)n Simple_repeat Simple_repeat 2 34 0 225 208 0 0 chr9 123184859 123184907 -19086537 + L1ME LINE L1 5771 5818 -303 206 231 0 19 chr9 123185039 123185091 -19086353 + GA-rich Low_complexity Low_complexity 3 53 0 595 303 132 25 chr9 123186441 123186804 -19084640 + LTR16C LTR ERVL 90 491 0 180 0 0 0 chr9 123187175 123187195 -19084249 + (A)n Simple_repeat Simple_repeat 1 20 0 1753 167 20 7 chr9 123187263 123187556 -19083888 + AluJb SINE Alu 1 297 -15 328 285 199 5 chr9 123188849 123189035 -19082409 - MIR SINE MIR -6 256 35 220 213 0 21 chr9 123190549 123190596 -19080848 + GA-rich Low_complexity Low_complexity 2 47 0 332 239 57 0 chr9 123190665 123190753 -19080691 + MIR SINE MIR 100 192 -70 24 0 0 0 chr9 123191378 123191402 -19080042 + AT_rich Low_complexity Low_complexity 1 24 0 473 272 87 26 chr9 123191402 123191597 -19079847 - MIR SINE MIR -48 214 8 367 295 74 7 chr9 123191972 123192121 -19079323 + MIR3 SINE MIR 38 196 -12 2082 131 0 7 chr9 123193363 123193668 -19077776 + AluJb SINE Alu 1 303 -9 1719 187 147 19 chr9 123194093 123194570 -19076874 + L1ME2 LINE L1 5487 6024 -140 2390 86 0 0 chr9 123194894 123195186 -19076258 + AluY SINE Alu 1 292 -19 251 290 176 15 chr9 123195793 123196055 -19075389 + L2 LINE L2 1802 2105 -1209 478 245 174 7 chr9 123196340 123196495 -19074949 + MER5A DNA MER1_type 9 189 0 206 128 77 0 chr9 123196525 123196564 -19074880 + MIR SINE MIR 37 78 -130 257 228 114 0 chr9 123196593 123196672 -19074772 - MIR SINE MIR -14 248 161 261 268 71 60 chr9 123196760 123196928 -19074516 - L3 LINE CR1 -237 1340 1171 25 31 0 0 chr9 123197412 123197444 -19074000 + AT_rich Low_complexity Low_complexity 1 32 0 340 286 37 53 chr9 123197467 123197656 -19073788 + L1ME LINE L1 5615 5800 -321 21 0 0 0 chr9 123197886 123197907 -19073537 + AT_rich Low_complexity Low_complexity 1 21 0 313 202 0 20 chr9 123199350 123199449 -19071995 + (TA)n Simple_repeat Simple_repeat 1 97 0 1053 182 0 0 chr9 123199460 123199630 -19071814 - AluJb SINE Alu -22 290 121 201 304 57 5 chr9 123199949 123200074 -19071370 + MIR SINE MIR 9 138 -70 265 243 54 54 chr9 123200358 123200469 -19070975 - MIR SINE MIR -75 187 77 218 306 0 14 chr9 123201030 123201102 -19070342 + L2 LINE L2 2983 3053 -219 188 375 118 7 chr9 123201446 123201590 -19069854 - L2 LINE L2 -2 3270 3111 404 270 66 13 chr9 123202767 123202919 -19068525 + MIR SINE MIR 92 251 -11 201 148 62 111 chr9 123203575 123203656 -19067788 + L2 LINE L2 2378 2454 -860 431 176 155 28 chr9 123203781 123203923 -19067521 - L1ME4a LINE L1 -1 6120 5961 460 259 15 7 chr9 123203987 123204122 -19067322 - L1ME4a LINE L1 -267 5854 5719 1188 153 15 5 chr9 123204588 123204790 -19066654 + MER3 DNA MER1_type 6 209 0 573 233 53 7 chr9 123204900 123205050 -19066394 - L1ME4a LINE L1 -404 5717 5561 392 301 33 7 chr9 123205871 123206024 -19065420 + MIR SINE MIR 92 248 -14 927 184 18 57 chr9 123206113 123206341 -19065103 + MER20 DNA MER1_type 1 219 0 365 225 65 130 chr9 123206836 123207067 -19064377 - MIR SINE MIR -12 250 35 511 269 0 58 chr9 123207998 123208206 -19063238 - L1MC5 LINE L1 -46 7915 7720 2230 101 0 0 chr9 123208212 123208500 -19062944 + AluY SINE Alu 11 298 -13 193 315 78 0 chr9 123208513 123208658 -19062786 - MIR SINE MIR -38 170 14 472 301 6 18 chr9 123208709 123208872 -19062572 + MIR SINE MIR 52 212 -50 180 176 0 0 chr9 123209081 123209115 -19062329 + (TG)n Simple_repeat Simple_repeat 2 35 0 395 208 19 42 chr9 123209726 123209850 -19061594 + MIR SINE MIR 23 150 -58 357 267 61 15 chr9 123209891 123210022 -19061422 + MIR SINE MIR 52 188 -74 4222 200 42 69 chr9 123210034 123210156 -19061288 + L1MC4 LINE L1 6803 6927 -1115 1809 157 29 20 chr9 123210156 123210294 -19061150 + L1MA9 LINE L1 5965 6100 -212 1754 160 13 29 chr9 123210294 123210606 -19060838 + AluJo SINE Alu 1 307 -5 1809 157 29 20 chr9 123210606 123210812 -19060632 + L1MA9 LINE L1 6100 6312 0 4222 200 42 69 chr9 123210812 123211818 -19059626 + L1MC4 LINE L1 6927 7900 -142 190 343 0 14 chr9 123211883 123211953 -19059491 + MIR SINE MIR 186 254 -8 1698 180 88 47 chr9 123212053 123212541 -19058903 + Charlie4a DNA MER1_type 1 508 0 484 232 28 7 chr9 123212869 123213011 -19058433 - MIR SINE MIR -32 230 86 420 284 10 101 chr9 123213247 123213307 -19058137 + MIR SINE MIR 74 138 -124 2219 113 3 3 chr9 123213307 123213617 -19057827 - AluSx SINE Alu -2 310 1 420 284 10 101 chr9 123213617 123213764 -19057680 + MIR SINE MIR 138 262 0 344 325 8 0 chr9 123213837 123213954 -19057490 - MIR SINE MIR -116 146 29 190 296 28 14 chr9 123214469 123214540 -19056904 + L2 LINE L2 3240 3311 -2 227 266 0 31 chr9 123215358 123215379 -19056065 + LTR67 LTR ERVL 496 557 0 259 186 0 0 chr9 123215379 123215422 -19056022 + MLT1K LTR MaLR 546 588 0 460 239 94 13 chr9 123215433 123215587 -19055857 - MIR SINE MIR -63 145 10 1960 157 0 7 chr9 123216244 123216550 -19054894 + AluSx SINE Alu 1 304 -8 1550 162 47 32 chr9 123216550 123216828 -19054616 - AluJo SINE Alu -30 282 1 2311 72 4 0 chr9 123217098 123217376 -19054068 - AluSc SINE Alu -9 300 22 192 233 35 116 chr9 123217618 123217704 -19053740 - MIR SINE MIR -106 102 24 189 0 0 0 chr9 123218214 123218235 -19053209 + (A)n Simple_repeat Simple_repeat 1 21 0 186 226 245 0 chr9 123218293 123218346 -19053098 - L2 LINE L2 0 3272 3207 342 353 52 19 chr9 123218492 123218761 -19052683 - L2 LINE L2 -174 3098 2821 999 229 161 79 chr9 123220192 123221603 -19049841 - HAL1 LINE L1 0 2507 708 2420 88 3 0 chr9 123221603 123221911 -19049533 - AluSp SINE Alu -4 309 1 999 229 161 79 chr9 123221911 123222683 -19048761 - HAL1 LINE L1 -1799 708 1 299 343 0 9 chr9 123222835 123222940 -19048504 + MIR SINE MIR 24 127 -135 285 320 31 0 chr9 123223451 123223579 -19047865 + L1ME4a LINE L1 5652 5783 -338 434 220 85 7 chr9 123223684 123223825 -19047619 + L1ME4a LINE L1 5970 6121 0 679 203 44 66 chr9 123223959 123224141 -19047303 + L1MC5 LINE L1 5699 5876 -1932 277 305 187 37 chr9 123224303 123224840 -19046604 + L1MC5 LINE L1 6136 6758 -1056 220 205 0 0 chr9 123224842 123224881 -19046563 + MER5A DNA MER1_type 12 50 -139 1572 136 29 0 chr9 123224900 123225143 -19046301 + MLT1D LTR MaLR 254 503 -2 932 195 133 81 chr9 123225172 123225602 -19045842 + L1MC5 LINE L1 7048 7499 -462 1916 143 0 0 chr9 123225634 123225914 -19045530 + AluSx SINE Alu 21 300 -12 2651 209 17 24 chr9 123225977 123226561 -19044883 + L1MC4a LINE L1 6556 7135 -673 180 0 0 0 chr9 123226902 123226922 -19044522 + (TA)n Simple_repeat Simple_repeat 2 21 0 3028 197 58 21 chr9 123226930 123227302 -19044142 - L1MC4a LINE L1 0 7808 7400 4789 50 40 27 chr9 123227302 123227902 -19043542 - LTR14B LTR ERVK 0 608 1 3028 197 58 21 chr9 123227902 123228188 -19043256 - L1MC4a LINE L1 -408 7400 7126 6082 31 0 14 chr9 123228206 123228904 -19042540 - SVA Other Other 0 1386 699 526 300 28 36 chr9 123279141 123279394 -18992050 - MIR SINE MIR -6 256 6 324 353 49 10 chr9 123279826 123280030 -18991414 + MIR SINE MIR 28 239 -23 210 355 8 33 chr9 123281081 123281202 -18990242 + L2 LINE L2 2947 3064 -208 14830 113 59 5 chr9 123281326 123283566 -18987878 + Tigger1 DNA MER2_type 1 2361 -57 371 295 0 0 chr9 123283591 123283703 -18987741 - MIR SINE MIR -104 158 47 21 36 0 0 chr9 123283864 123283892 -18987552 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr9 123284180 123284212 -18987232 + (A)n Simple_repeat Simple_repeat 1 32 0 243 0 0 0 chr9 123284212 123284239 -18987205 + (TA)n Simple_repeat Simple_repeat 2 28 0 511 278 71 86 chr9 123284843 123285225 -18986219 + L2 LINE L2 2859 3234 -38 283 337 131 5 chr9 123285929 123286128 -18985316 - MIR SINE MIR -3 259 36 209 161 0 0 chr9 123286216 123286247 -18985197 + (CA)n Simple_repeat Simple_repeat 2 32 0 2364 89 7 0 chr9 123288004 123288306 -18983138 - AluSx SINE Alu -8 304 1 1796 186 0 0 chr9 123288335 123288620 -18982824 + AluJo SINE Alu 1 285 -27 191 271 62 83 chr9 123289461 123289605 -18981839 + L2 LINE L2 2592 2732 -582 180 315 158 20 chr9 123289741 123289944 -18981500 + L2 LINE L2 2866 3096 -176 231 61 0 0 chr9 123291320 123291353 -18980091 + (GA)n Simple_repeat Simple_repeat 1 33 0 458 211 99 110 chr9 123291847 123291952 -18979492 + L1ME4a LINE L1 5516 5621 -500 7165 35 3 0 chr9 123291952 123292798 -18978646 + L1PA4 LINE L1 5307 6155 0 458 211 99 110 chr9 123292798 123292812 -18978632 + L1ME4a LINE L1 5621 5634 -487 1677 186 0 10 chr9 123292812 123293103 -18978341 + AluJo SINE Alu 1 288 -24 458 211 99 110 chr9 123293103 123293383 -18978061 + L1ME4a LINE L1 5634 5906 -215 21 0 0 0 chr9 123293528 123293549 -18977895 + AT_rich Low_complexity Low_complexity 1 21 0 912 241 58 38 chr9 123293940 123294050 -18977394 + L1ME4a LINE L1 5552 5658 -463 738 200 0 0 chr9 123294050 123294180 -18977264 + FLAM_A SINE Alu 4 133 0 912 241 58 38 chr9 123294180 123294414 -18977030 + L1ME4a LINE L1 5658 5903 -218 414 0 0 0 chr9 123294434 123294480 -18976964 + (TG)n Simple_repeat Simple_repeat 1 46 0 300 27 0 0 chr9 123294479 123294516 -18976928 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 2366 85 7 3 chr9 123295163 123295470 -18975974 + AluSg SINE Alu 1 308 -2 266 195 130 41 chr9 123295470 123295593 -18975851 + L1ME4a LINE L1 5977 6110 -11 2352 128 33 65 chr9 123295654 123296114 -18975330 + MER65A LTR ERV1 1 445 0 23 0 0 0 chr9 123296371 123296394 -18975050 + AT_rich Low_complexity Low_complexity 1 23 0 426 227 11 0 chr9 123296427 123296515 -18974929 - L1ME3A LINE L1 -9 6161 6073 298 130 0 22 chr9 123296532 123296578 -18974866 + Alu SINE Alu 2 46 -257 2175 121 0 3 chr9 123296628 123296917 -18974527 + AluSx SINE Alu 1 288 -24 275 203 68 29 chr9 123296935 123297283 -18974161 + (CATAT)n Simple_repeat Simple_repeat 1 361 0 263 286 288 49 chr9 123297530 123297609 -18973835 - MIR SINE MIR -36 172 113 2600 95 8 22 chr9 123297609 123297906 -18973538 + THE1B LTR MaLR 1 294 -70 2565 59 7 0 chr9 123297906 123298209 -18973235 - AluY SINE Alu -6 305 1 2600 95 8 22 chr9 123298209 123298280 -18973164 + THE1B LTR MaLR 294 364 0 263 286 288 49 chr9 123298280 123298333 -18973111 - MIR SINE MIR -95 113 20 668 218 107 58 chr9 123298397 123298622 -18972822 + L1MD2 LINE L1 6123 6358 -1 769 244 32 41 chr9 123300280 123300526 -18970918 + MIR SINE MIR 19 262 0 350 263 70 65 chr9 123300543 123300623 -18970821 + MIR SINE MIR 57 135 -127 2066 126 10 0 chr9 123300623 123300917 -18970527 + AluSx SINE Alu 1 297 -15 350 263 70 65 chr9 123300917 123301022 -18970422 + MIR SINE MIR 135 243 -19 539 306 28 14 chr9 123301430 123301646 -18969798 + MIR SINE MIR 14 232 -30 259 333 7 15 chr9 123301658 123301793 -18969651 + L2 LINE L2 688 821 -2493 1811 163 3 3 chr9 123301884 123302178 -18969266 - AluJb SINE Alu -14 298 5 450 337 55 38 chr9 123302254 123302906 -18968538 + L2 LINE L2 2029 2691 -623 1433 159 83 10 chr9 123303598 123303900 -18967544 + MER33 DNA MER1_type 1 324 0 574 265 87 5 chr9 123304606 123304791 -18966653 + MIR SINE MIR 51 250 -12 2489 41 7 0 chr9 123306740 123307035 -18964409 + L1PA5 LINE L1 5725 6021 -133 850 56 24 32 chr9 123307136 123307261 -18964183 + L1PA5 LINE L1 6031 6154 0 247 217 49 138 chr9 123307380 123307583 -18963861 + L2 LINE L2 2863 3047 -225 215 283 0 0 chr9 123307702 123307755 -18963689 + MIR SINE MIR 95 147 -61 557 241 134 22 chr9 123308300 123308524 -18962920 - Charlie8 DNA MER1_type -2131 286 38 286 274 84 88 chr9 123309546 123309756 -18961688 + L2 LINE L2 2258 2467 -847 2065 121 20 16 chr9 123309756 123310062 -18961382 + AluSx SINE Alu 1 307 -5 286 274 84 88 chr9 123310062 123310552 -18960892 + L2 LINE L2 2467 2955 -359 498 233 31 0 chr9 123313420 123313549 -18957895 + MIR SINE MIR 49 181 -81 484 206 94 148 chr9 123313814 123314091 -18957353 + MIR SINE MIR 1 262 0 337 290 0 0 chr9 123314113 123314206 -18957238 - MIR SINE MIR -111 151 59 358 268 142 0 chr9 123314803 123314930 -18956514 + MIR3 SINE MIR 15 159 -49 312 245 32 0 chr9 123315552 123315646 -18955798 - L1ME4a LINE L1 -58 6063 5967 407 269 19 12 chr9 123315682 123315842 -18955602 - L1ME4a LINE L1 -234 5887 5727 277 176 0 0 chr9 123315866 123315917 -18955527 + MIR SINE MIR 204 254 -8 498 279 74 26 chr9 123315925 123316115 -18955329 - L1ME4a LINE L1 -395 5726 5528 317 286 75 81 chr9 123316849 123317010 -18954434 + MIR SINE MIR 20 179 -83 2209 97 31 3 chr9 123318460 123318750 -18952694 + AluSx SINE Alu 1 298 -14 241 283 88 9 chr9 123318875 123318988 -18952456 + MIR SINE MIR 30 151 -57 572 272 146 11 chr9 123319372 123319640 -18951804 + L2 LINE L2 2484 2787 -527 428 274 70 91 chr9 123319676 123319815 -18951629 + L2 LINE L2 2949 3089 -224 2147 102 18 0 chr9 123319815 123320098 -18951346 + AluSx SINE Alu 1 288 -24 428 274 70 91 chr9 123320098 123320331 -18951113 + L2 LINE L2 3089 3313 0 1426 210 73 9 chr9 123321463 123321792 -18949652 + L1ME3A LINE L1 5807 6156 -14 1525 169 7 30 chr9 123322858 123323153 -18948291 - AluJo SINE Alu -2 310 23 2273 104 3 13 chr9 123323212 123323528 -18947916 - AluSq SINE Alu 0 313 1 301 80 0 40 chr9 123324059 123324109 -18947335 + Alu SINE Alu 247 294 -8 1793 152 10 26 chr9 123325023 123325326 -18946118 + AluJo SINE Alu 7 304 -8 2077 130 7 3 chr9 123325368 123325676 -18945768 + AluSx SINE Alu 1 309 -3 429 289 87 16 chr9 123325988 123326171 -18945273 + MIR SINE MIR 34 228 -34 218 292 187 23 chr9 123326805 123326976 -18944468 - MIR SINE MIR -15 247 49 334 262 105 17 chr9 123327561 123328350 -18943094 + L1MC4 LINE L1 6958 7888 -154 7743 29 1 0 chr9 123328350 123329349 -18942095 + L1PA4 LINE L1 5154 6155 0 334 262 105 17 chr9 123329349 123329519 -18941925 + L1MC4 LINE L1 7888 8042 0 184 218 103 58 chr9 123329666 123329753 -18941691 - MIR3 SINE MIR -115 93 3 588 283 11 37 chr9 123330051 123330242 -18941202 + L1ME3A LINE L1 5969 6154 -16 835 249 0 0 chr9 123330254 123330419 -18941025 - FRAM SINE Alu -1 165 1 352 292 35 40 chr9 123330497 123330723 -18940721 + L1MC4a LINE L1 5762 5986 -1822 317 278 134 1 chr9 123330934 123331106 -18940338 + MIR SINE MIR 8 197 -62 2302 113 3 0 chr9 123331129 123331439 -18940005 - AluSx SINE Alu -1 311 1 270 51 26 0 chr9 123331596 123331635 -18939809 + L1ME1 LINE L1 5433 5472 -2570 2044 93 32 22 chr9 123331666 123331944 -18939500 - AluSx SINE Alu -31 281 1 255 176 59 0 chr9 123331945 123331996 -18939448 + MIR SINE MIR 95 148 -60 259 136 114 0 chr9 123331997 123332041 -18939403 - Alu SINE Alu -251 51 3 2499 218 63 12 chr9 123332041 123332682 -18938762 + L1ME1 LINE L1 5469 6079 -87 415 246 48 4 chr9 123332677 123332800 -18938644 + L1ME2 LINE L1 6048 6334 0 * 1426 101 0 39 chr9 123333010 123333217 -18938227 + AluSc SINE Alu 106 304 -5 702 283 128 33 chr9 123333279 123333817 -18937627 + L2 LINE L2 2722 3312 -1 340 303 69 17 chr9 123333844 123334019 -18937425 + MIR SINE MIR 70 253 -9 2407 80 3 6 chr9 123334020 123334331 -18937113 + AluY SINE Alu 1 310 -1 183 129 0 0 chr9 123334372 123334403 -18937041 + (A)n Simple_repeat Simple_repeat 1 31 0 560 246 97 24 chr9 123334928 123335135 -18936309 + MIR SINE MIR 17 238 -24 2359 89 0 3 chr9 123335438 123335730 -18935714 - AluSx SINE Alu -21 291 1 1857 150 7 17 chr9 123336119 123336413 -18935031 - AluJb SINE Alu -21 291 1 277 163 20 0 chr9 123336797 123336846 -18934598 + MIR SINE MIR 92 141 -121 194 300 200 0 chr9 123337618 123337738 -18933706 - MIR SINE MIR -37 225 82 408 297 87 27 chr9 123337921 123338208 -18933236 - L2 LINE L2 -249 3064 2763 284 309 180 7 chr9 123338312 123338520 -18932924 - MIR SINE MIR -7 255 14 542 200 55 73 chr9 123338943 123338993 -18932451 + L1MC/D LINE L1 5618 5667 -2141 2085 98 0 74 chr9 123338993 123339319 -18932125 + AluSg SINE Alu 1 302 -8 542 200 55 73 chr9 123339319 123339433 -18932011 + L1MC/D LINE L1 5667 5779 -2029 340 276 10 0 chr9 123339976 123340074 -18931370 + MIR3 SINE MIR 93 191 -17 598 313 58 43 chr9 123340141 123340790 -18930654 + L2 LINE L2 2614 3271 -1 614 173 142 12 chr9 123341409 123341571 -18929873 - MIR SINE MIR -52 210 28 276 235 62 12 chr9 123341613 123341694 -18929750 + MIR3 SINE MIR 100 184 -24 231 296 46 37 chr9 123341789 123341897 -18929547 + MIR SINE MIR 154 262 0 352 312 77 18 chr9 123342581 123342751 -18928693 + MIR SINE MIR 13 192 -70 963 158 53 47 chr9 123343567 123343757 -18927687 - MER58A DNA MER1_type 0 224 34 277 361 31 0 chr9 123343809 123343939 -18927505 - L2 LINE L2 -2 3270 3137 199 222 0 0 chr9 123343976 123344021 -18927423 + L2 LINE L2 3228 3272 0 * 1187 253 110 21 chr9 123344020 123344751 -18926693 - L2 LINE L2 -1 3312 2511 198 103 0 0 chr9 123344753 123344782 -18926662 + (AAATG)n Simple_repeat Simple_repeat 2 30 0 188 285 83 49 chr9 123345012 123345156 -18926288 + L2 LINE L2 2906 3054 -218 2338 81 3 0 chr9 123345365 123345649 -18925795 + AluSx SINE Alu 1 285 -27 1869 148 16 3 chr9 123345691 123345995 -18925449 + AluJb SINE Alu 5 312 0 233 250 197 0 chr9 123346984 123347060 -18924384 + MIR SINE MIR 8 98 -164 198 312 210 0 chr9 123347135 123347273 -18924171 + MIR SINE MIR 96 262 0 249 267 93 0 chr9 123347517 123347603 -18923841 + MIR SINE MIR 107 200 -62 256 345 9 0 chr9 123347726 123347839 -18923605 - MIR SINE MIR -65 143 30 2245 123 0 10 chr9 123348074 123348383 -18923061 + AluSx SINE Alu 1 306 -6 220 262 205 33 chr9 123348672 123348794 -18922650 - MIR3 SINE MIR -48 160 18 345 240 30 50 chr9 123349228 123349328 -18922116 - MIR SINE MIR -63 145 48 21 0 0 0 chr9 123349629 123349650 -18921794 + AT_rich Low_complexity Low_complexity 1 21 0 2177 113 13 3 chr9 123349858 123350160 -18921284 - AluSx SINE Alu -7 305 1 392 189 229 8 chr9 123350802 123350924 -18920520 + MER112 DNA MER1_type 105 253 -7 453 296 30 6 chr9 123350938 123351107 -18920337 - L1ME LINE L1 -348 5773 5601 729 133 51 97 chr9 123351108 123351228 -18920216 + L1MB3 LINE L1 5320 5429 -755 2226 104 3 0 chr9 123351228 123351526 -18919918 + AluSx SINE Alu 1 299 -13 729 133 51 97 chr9 123351526 123351600 -18919844 + L1MB3 LINE L1 5429 5505 -679 682 188 15 15 chr9 123351601 123351734 -18919710 + FLAM_C SINE Alu 1 133 0 1872 153 9 38 chr9 123351735 123351887 -18919557 + L1MB3 LINE L1 5808 5963 -220 2036 141 3 0 chr9 123351887 123352186 -18919258 + AluSx SINE Alu 1 300 -12 1872 153 9 38 chr9 123352186 123352379 -18919065 + L1MB3 LINE L1 5963 6143 -40 568 270 71 19 chr9 123352441 123352652 -18918792 - MIR SINE MIR -13 249 28 2255 97 3 0 chr9 123352796 123353095 -18918349 + AluSc SINE Alu 2 301 -8 483 244 16 24 chr9 123353297 123353372 -18918072 - MER94 DNA DNA -7 127 52 1964 162 0 0 chr9 123353372 123353674 -18917770 - AluJb SINE Alu -10 302 1 483 244 16 24 chr9 123353674 123353725 -18917719 - MER94 DNA DNA -82 52 2 615 261 79 46 chr9 123354043 123354284 -18917160 - MIR SINE MIR -12 250 2 1839 100 108 0 chr9 123355642 123355911 -18915533 - AluSc SINE Alu -11 298 1 961 96 0 22 chr9 123356141 123356277 -18915167 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr9 123356420 123356441 -18915003 + (TG)n Simple_repeat Simple_repeat 2 22 0 522 243 15 29 chr9 123356457 123356593 -18914851 + L2 LINE L2 3139 3272 0 270 56 0 0 chr9 123356717 123356753 -18914691 + (TC)n Simple_repeat Simple_repeat 1 36 0 397 239 47 87 chr9 123356960 123357041 -18914403 + MIR3 SINE MIR 14 97 -111 2341 98 3 0 chr9 123357041 123357338 -18914106 - AluSp SINE Alu -15 298 1 397 239 47 87 chr9 123357338 123357429 -18914015 + MIR3 SINE MIR 97 186 -22 2389 88 20 0 chr9 123357444 123357741 -18913703 - AluSx SINE Alu -9 303 1 568 280 57 10 chr9 123357881 123358091 -18913353 - MIR SINE MIR -11 251 34 268 273 91 37 chr9 123358277 123358414 -18913030 + MIR SINE MIR 30 174 -59 1844 170 0 3 chr9 123358495 123358789 -18912655 - AluJo SINE Alu -19 293 1 276 253 10 13 chr9 123359280 123359386 -18912058 - MIR SINE MIR -58 150 83 1210 177 152 0 chr9 123359412 123359695 -18911749 - L1MC4a LINE L1 0 7808 7483 2233 85 44 3 chr9 123359697 123359991 -18911453 - AluSc SINE Alu -3 306 1 273 244 67 0 chr9 123360404 123360494 -18910950 + MIR3 SINE MIR 102 197 -11 452 263 95 7 chr9 123360505 123360642 -18910802 - MIR SINE MIR -5 257 109 654 216 11 40 chr9 123360663 123360839 -18910605 + MER34 LTR ERV1 1 171 -371 434 197 73 56 chr9 123360924 123361102 -18910342 + MER34 LTR ERV1 355 535 -7 229 271 57 14 chr9 123361121 123361191 -18910253 - MIR SINE MIR -188 74 2 2397 84 3 10 chr9 123361298 123361607 -18909837 + AluSc SINE Alu 1 307 -2 450 253 44 0 chr9 123361843 123361986 -18909458 - MIR SINE MIR -67 141 34 509 293 122 6 chr9 123362479 123362643 -18908801 + MER91A DNA MER1_type 5 187 -9 2115 142 3 0 chr9 123362866 123363175 -18908269 - AluSq SINE Alu -3 310 1 437 249 16 17 chr9 123363185 123363314 -18908130 - L1ME1 LINE L1 -3 6331 6046 2158 130 0 10 chr9 123363317 123363618 -18907826 + AluSx SINE Alu 1 298 -14 1089 129 36 26 chr9 123363642 123363689 -18907755 + MER3 DNA MER1_type 6 54 -155 553 191 131 71 chr9 123363689 123363872 -18907572 - MER3 DNA MER1_type 0 209 16 2449 63 3 3 chr9 123363922 123364224 -18907220 - AluY SINE Alu -9 302 1 2160 129 13 3 chr9 123364238 123364548 -18906896 - AluSq SINE Alu 0 313 1 713 216 0 20 chr9 123364589 123364737 -18906707 + AluJo SINE Alu 2 146 -166 1955 148 0 13 chr9 123364741 123365039 -18906405 + AluSx SINE Alu 5 298 -14 2047 158 0 0 chr9 123365058 123365369 -18906075 - AluJb SINE Alu -1 311 1 253 221 44 0 chr9 123365370 123365438 -18906006 - L1ME1 LINE L1 -215 5949 5879 270 231 154 0 chr9 123365439 123365530 -18905914 + L2 LINE L2 3209 3313 0 407 352 6 16 chr9 123365588 123365770 -18905674 - MIR3 SINE MIR -13 195 16 2277 92 0 7 chr9 123366123 123366417 -18905027 - AluSg SINE Alu -18 292 1 273 191 44 15 chr9 123366527 123366595 -18904849 + AluSg/x SINE Alu 65 134 -166 4017 139 49 24 chr9 123366697 123367440 -18904004 - LTR1B LTR ERV1 0 785 1 261 57 0 0 chr9 123368537 123368572 -18902872 + (TG)n Simple_repeat Simple_repeat 1 35 0 492 188 0 0 chr9 123368581 123368661 -18902783 - AluJb SINE Alu -30 282 203 1626 184 3 48 chr9 123368662 123368978 -18902466 + AluJo SINE Alu 1 302 -10 2189 112 3 10 chr9 123369259 123369564 -18901880 - AluSq SINE Alu -10 303 1 2469 207 68 65 chr9 123369615 123369807 -18901637 - L1M4 LINE L1 -2191 3955 3765 1929 96 59 11 chr9 123369807 123370077 -18901367 - AluSx SINE Alu -29 283 1 2469 207 68 65 chr9 123370077 123370353 -18901091 - L1M4 LINE L1 -2381 3765 3492 1557 185 3 60 chr9 123370353 123370672 -18900772 - AluJo SINE Alu -11 301 1 2469 207 68 65 chr9 123370672 123370693 -18900751 - L1M4 LINE L1 -2654 3492 3473 2052 105 3 18 chr9 123370693 123371004 -18900440 + AluSg SINE Alu 1 307 0 2469 207 68 65 chr9 123371004 123371154 -18900290 - L1M4 LINE L1 -2673 3473 3325 1713 130 24 34 chr9 123371154 123371446 -18899998 - AluSx SINE Alu -23 289 1 2469 207 68 65 chr9 123371446 123371515 -18899929 - L1M4 LINE L1 -2821 3325 3258 261 0 0 0 chr9 123371515 123371544 -18899900 + (TG)n Simple_repeat Simple_repeat 2 30 0 2469 207 68 65 chr9 123371544 123371853 -18899591 - L1M4 LINE L1 -2888 3258 2929 2266 76 0 0 chr9 123371860 123372135 -18899309 - AluSx SINE Alu -14 298 24 394 257 73 55 chr9 123372135 123372157 -18899287 - L1MB1 LINE L1 -283 5906 5885 675 228 76 40 chr9 123372157 123372407 -18899037 - L1ME3A LINE L1 -286 5884 5626 2328 97 10 0 chr9 123372533 123372833 -18898611 - AluSx SINE Alu -9 303 1 2297 110 3 0 chr9 123373084 123373392 -18898052 - AluSx SINE Alu -3 309 1 240 392 115 0 chr9 123373644 123373774 -18897670 - L2 LINE L2 -12 3260 3116 2572 34 0 3 chr9 123374485 123374783 -18896661 - AluY SINE Alu -14 297 1 29 28 0 0 chr9 123375737 123375773 -18895671 + AT_rich Low_complexity Low_complexity 1 36 0 2314 88 20 0 chr9 123376813 123377109 -18894335 - AluSg SINE Alu -8 302 1 21 0 0 0 chr9 123377834 123377855 -18893589 + AT_rich Low_complexity Low_complexity 1 21 0 544 294 61 25 chr9 123377913 123378110 -18893334 + MIR SINE MIR 9 212 -50 2310 84 3 3 chr9 123380699 123380998 -18890446 + AluSg1 SINE Alu 1 299 -10 445 265 37 79 chr9 123381430 123381619 -18889825 + MIR SINE MIR 82 262 0 211 200 44 0 chr9 123382083 123382128 -18889316 - MIR SINE MIR -105 157 111 21 36 0 0 chr9 123382270 123382298 -18889146 + AT_rich Low_complexity Low_complexity 1 28 0 690 116 11 0 chr9 123382903 123382998 -18888446 + FLAM_C SINE Alu 24 119 -24 1156 331 87 42 chr9 123383274 123384387 -18887057 + L2 LINE L2 2090 3266 -6 32 0 0 0 chr9 123384470 123384502 -18886942 + AT_rich Low_complexity Low_complexity 1 32 0 489 102 51 20 chr9 123384713 123384811 -18886633 - L1MB8 LINE L1 -1 6177 6077 322 246 56 70 chr9 123384818 123384946 -18886498 + MIR3 SINE MIR 56 182 -26 269 336 68 32 chr9 123385223 123385443 -18886001 + L2 LINE L2 2832 3059 -213 236 259 0 19 chr9 123385546 123385600 -18885844 - L2 LINE L2 -211 3061 3009 3844 176 54 30 chr9 123385605 123386581 -18884863 + L1MB8 LINE L1 5176 6173 -5 588 141 25 8 chr9 123386599 123386720 -18884724 + GA-rich Low_complexity Low_complexity 2 124 0 620 197 16 0 chr9 123386724 123386851 -18884593 + MLT1F LTR MaLR 414 542 0 209 224 20 0 chr9 123387504 123387553 -18883891 + L2 LINE L2 3169 3218 -95 303 232 74 21 chr9 123387636 123387731 -18883713 + L1ME LINE L1 5727 5826 -344 180 0 0 0 chr9 123387733 123387753 -18883691 + (T)n Simple_repeat Simple_repeat 1 20 0 1006 182 6 6 chr9 123387762 123387932 -18883512 - AluJb SINE Alu -130 182 13 209 173 19 19 chr9 123388357 123388409 -18883035 + A-rich Low_complexity Low_complexity 2 53 0 1728 129 11 26 chr9 123388825 123389096 -18882348 - AluSx SINE Alu -11 301 35 333 150 0 0 chr9 123389719 123389766 -18881678 + (TA)n Simple_repeat Simple_repeat 1 50 -10 2177 132 3 0 chr9 123389766 123390069 -18881375 + AluSp SINE Alu 2 305 -8 333 150 0 0 chr9 123390069 123390081 -18881363 + (TA)n Simple_repeat Simple_repeat 49 60 0 228 67 0 0 chr9 123390106 123390136 -18881308 + (CA)n Simple_repeat Simple_repeat 2 31 0 1977 161 3 6 chr9 123390420 123390731 -18880713 + AluJb SINE Alu 1 310 -2 36 23 0 0 chr9 123391051 123391094 -18880350 + AT_rich Low_complexity Low_complexity 1 43 0 2531 59 3 0 chr9 123391205 123391508 -18879936 + AluY SINE Alu 1 304 -7 286 290 84 0 chr9 123391525 123391632 -18879812 + MIR SINE MIR 38 153 -109 292 319 11 0 chr9 123391705 123391796 -18879648 + MIR3 SINE MIR 110 201 -7 1828 268 74 82 chr9 123392257 123393217 -18878227 - L2 LINE L2 -414 2900 1949 2166 98 7 7 chr9 123393423 123393719 -18877725 + AluSx SINE Alu 1 296 -16 2306 80 0 3 chr9 123393871 123394180 -18877264 + AluSq SINE Alu 1 308 0 576 238 106 12 chr9 123394195 123394355 -18877089 - MIR SINE MIR 0 262 88 536 308 40 0 chr9 123394408 123394635 -18876809 - L1ME LINE L1 -348 5773 5538 554 308 108 71 chr9 123395168 123395658 -18875786 - L2 LINE L2 -1 3312 2805 540 281 57 37 chr9 123395912 123396544 -18874900 - L1MDa LINE L1 -4822 1393 796 23 0 0 0 chr9 123397225 123397248 -18874196 + AT_rich Low_complexity Low_complexity 1 23 0 1805 177 17 0 chr9 123399036 123399335 -18872109 - AluJb SINE Alu -8 304 1 2124 124 7 23 chr9 123399393 123399700 -18871744 + AluSx SINE Alu 1 302 -10 675 148 10 0 chr9 123399794 123399895 -18871549 + FRAM SINE Alu 1 96 -80 634 115 48 0 chr9 123399895 123399999 -18871445 + PRIMA41-int LTR ERV1 6093 6201 -1555 1705 131 0 19 chr9 123399999 123400266 -18871178 - LTR8 LTR ERV1 0 691 430 565 119 12 0 chr9 123400267 123400351 -18871093 + FAM SINE Alu 83 167 -18 2380 98 7 0 chr9 123400361 123400668 -18870776 + AluSg SINE Alu 1 309 -1 479 255 154 5 chr9 123401533 123401721 -18869723 + MIR SINE MIR 35 250 -12 24 53 0 0 chr9 123401837 123401875 -18869569 + AT_rich Low_complexity Low_complexity 1 38 0 2305 108 0 10 chr9 123402263 123402570 -18868874 - AluSx SINE Alu -8 304 1 234 0 0 0 chr9 123403276 123403302 -18868142 + (T)n Simple_repeat Simple_repeat 1 26 0 1494 228 60 20 chr9 123403302 123403702 -18867742 - LTR40a LTR ERVL -103 416 1 1887 156 7 19 chr9 123403779 123404087 -18867357 - AluJb SINE Alu -8 304 1 1910 138 14 10 chr9 123404165 123404454 -18866990 + AluSx SINE Alu 1 290 -22 2329 100 3 0 chr9 123404459 123404759 -18866685 + AluSx SINE Alu 1 301 -11 362 162 81 0 chr9 123404759 123404833 -18866611 + MER58 DNA MER1_type 181 260 -2160 427 94 0 0 chr9 123404875 123404939 -18866505 - L1MA5 LINE L1 -2 7000 6937 13934 164 34 28 chr9 123404950 123406295 -18865149 - L1MA5 LINE L1 -255 6747 5411 2229 128 0 0 chr9 123406295 123406592 -18864852 - AluSx SINE Alu -15 297 1 13934 164 34 28 chr9 123406592 123406747 -18864697 - L1MA5 LINE L1 -1591 5411 5258 1931 105 4 0 chr9 123406747 123406994 -18864450 - AluSc SINE Alu -23 286 39 13934 164 34 28 chr9 123406994 123409254 -18862190 - L1MA5 LINE L1 -1744 5258 2994 988 39 16 8 chr9 123409254 123409382 -18862062 - AluY SINE Alu -2 309 181 5615 213 18 18 chr9 123409382 123410752 -18860692 - L1MA5 LINE L1 -3848 3000 1629 1922 154 3 14 chr9 123410752 123411045 -18860399 - AluSx SINE Alu -22 290 1 5615 213 18 18 chr9 123411045 123411236 -18860208 - L1MA5 LINE L1 -5219 1629 1439 5226 70 42 19 chr9 123411511 123412254 -18859190 + SVA Other Other 626 1385 -1 2416 98 0 0 chr9 123412319 123412625 -18858819 + AluSg1 SINE Alu 1 306 -3 1757 171 16 20 chr9 123412794 123413099 -18858345 - AluJb SINE Alu -8 304 1 729 274 34 4 chr9 123413353 123413624 -18857820 - L1ME LINE L1 -559 5611 5333 967 178 6 0 chr9 123413625 123413788 -18857656 - FRAM SINE Alu -13 163 1 523 215 20 35 chr9 123413795 123413995 -18857449 - L1ME LINE L1 -843 5303 5107 2294 108 7 0 chr9 123414035 123414341 -18857103 + AluSx SINE Alu 1 308 -4 790 237 112 19 chr9 123414346 123414561 -18856883 + MIR SINE MIR 28 262 0 486 283 65 22 chr9 123414603 123414879 -18856565 - L1ME LINE L1 -1112 5034 4747 1054 280 170 17 chr9 123414978 123415389 -18856055 + L2 LINE L2 2840 3313 0 2860 108 31 14 chr9 123415515 123415961 -18855483 - L1PA16 LINE L1 -3 6163 5710 358 256 75 44 chr9 123416351 123416511 -18854933 + MER5A DNA MER1_type 22 186 -3 * 687 217 8 0 chr9 123416398 123416527 -18854917 - MER5A DNA MER1_type -58 131 2 275 247 103 31 chr9 123417181 123417278 -18854166 + MIR SINE MIR 9 112 -150 2460 196 40 12 chr9 123418397 123418504 -18852940 - L1MC2 LINE L1 -4 7985 7883 1659 134 34 75 chr9 123418504 123418825 -18852619 - AluJo SINE Alu -4 308 1 2460 196 40 12 chr9 123418825 123419240 -18852204 - L1MC2 LINE L1 -106 7883 6238 473 241 168 21 chr9 123419375 123419566 -18851878 + MIR SINE MIR 37 255 -7 260 385 39 39 chr9 123421252 123421431 -18850013 + L2 LINE L2 2921 3099 -173 23 68 0 0 chr9 123421764 123421808 -18849636 + AT_rich Low_complexity Low_complexity 1 44 0 805 325 87 43 chr9 123422533 123423063 -18848381 + L2 LINE L2 2274 2826 -488 445 224 9 56 chr9 123423079 123423186 -18848258 - L2 LINE L2 0 3313 3212 980 211 128 26 chr9 123423752 123424064 -18847380 + MER2 DNA MER2_type 1 344 0 3344 154 23 4 chr9 123424101 123424664 -18846780 + MER6A DNA MER2_type 32 605 0 1774 75 0 18 chr9 123424792 123425020 -18846424 + AluSg1 SINE Alu 1 224 -85 769 254 45 41 chr9 123426176 123426396 -18845048 + MIR SINE MIR 8 228 -34 2398 78 0 0 chr9 123426462 123426758 -18844686 - AluSg SINE Alu -14 296 1 360 0 0 0 chr9 123426934 123426950 -18844494 + (CA)n Simple_repeat Simple_repeat 1 56 0 360 0 0 0 chr9 123426950 123426990 -18844454 + (CA)n Simple_repeat Simple_repeat 1 40 0 2002 130 30 7 chr9 123427011 123427311 -18844133 + AluJb SINE Alu 1 307 -5 216 67 0 0 chr9 123427391 123427421 -18844023 + (CA)n Simple_repeat Simple_repeat 2 31 0 362 200 24 0 chr9 123427463 123427548 -18843896 - L1MA3 LINE L1 0 6305 6219 820 101 22 7 chr9 123427548 123427686 -18843758 - L1MA4 LINE L1 -133 6167 6028 476 311 48 18 chr9 123427686 123427853 -18843591 - MIR SINE MIR -63 145 9 2336 116 0 0 chr9 123428168 123428479 -18842965 - AluSx SINE Alu -1 311 1 30 27 0 0 chr9 123428479 123428516 -18842928 + AT_rich Low_complexity Low_complexity 1 37 0 1314 258 113 2 chr9 123428611 123429011 -18842433 - L2 LINE L2 -2536 778 335 6948 140 44 2 chr9 123429159 123430334 -18841110 + Tigger3b DNA MER2_type 1 1225 -6 384 260 60 85 chr9 123430911 123431073 -18840371 + MIR SINE MIR 28 184 -78 2484 70 0 0 chr9 123431073 123431375 -18840069 + AluY SINE Alu 1 302 -9 384 260 60 85 chr9 123431375 123431447 -18839997 + MIR SINE MIR 184 256 -6 194 247 24 129 chr9 123431559 123431609 -18839835 - MIR SINE MIR -109 153 113 738 149 9 0 chr9 123431609 123431753 -18839691 + FLAM_C SINE Alu 2 146 0 194 247 24 129 chr9 123431753 123431786 -18839658 - MIR SINE MIR -149 113 78 1137 184 37 9 chr9 123431830 123432048 -18839396 - MER58A DNA MER1_type 0 224 1 279 270 34 11 chr9 123432582 123432671 -18838773 + MIR SINE MIR 1 91 -171 2262 84 3 7 chr9 123432798 123433094 -18838350 - AluSx SINE Alu -17 295 1 410 177 348 19 chr9 123433273 123433431 -18838013 - MIR SINE MIR -6 256 47 315 65 0 0 chr9 123434582 123434628 -18836816 + (TG)n Simple_repeat Simple_repeat 2 47 0 1836 87 6 93 chr9 123435060 123435404 -18836040 - L1MA2 LINE L1 0 6304 5991 1895 134 3 11 chr9 123436047 123436331 -18835113 + AluJb SINE Alu 9 290 -22 21 0 0 0 chr9 123436340 123436361 -18835083 + AT_rich Low_complexity Low_complexity 1 21 0 221 379 93 0 chr9 123437039 123437200 -18834244 + L2 LINE L2 2871 3046 -226 570 228 37 43 chr9 123437275 123437437 -18834007 + MIR SINE MIR 1 161 -101 486 167 0 0 chr9 123438147 123438225 -18833219 + LTR40b LTR ERVL 385 462 0 2358 165 24 34 chr9 123439685 123440019 -18831425 - L1MA5 LINE L1 -2 6298 5969 2214 110 3 0 chr9 123440019 123440310 -18831134 - AluSg SINE Alu -18 292 1 2358 165 24 34 chr9 123440310 123440479 -18830965 - L1MA5 LINE L1 -331 5969 5800 2938 146 28 10 chr9 123440479 123440987 -18830457 - L1MA5 LINE L1 -1071 5075 4559 2175 199 148 26 chr9 123441253 123441883 -18829561 + L1ME1 LINE L1 5435 6064 -102 2175 103 3 0 chr9 123442551 123442864 -18828580 + AluSx SINE Alu 1 314 0 182 362 29 38 chr9 123443498 123443603 -18827841 - MIR SINE MIR -4 258 155 223 317 37 12 chr9 123443767 123443849 -18827595 + MIR SINE MIR 67 150 -112 491 234 41 74 chr9 123444182 123444520 -18826924 + L1ME LINE L1 2174 2500 -3646 2064 124 0 0 chr9 123444929 123445204 -18826240 - AluSx SINE Alu -37 275 1 331 313 168 26 chr9 123445472 123445967 -18825477 + L2 LINE L2 1464 2028 -1286 6125 207 90 43 chr9 123446249 123447115 -18824329 + L1ME LINE L1 3280 4104 -2062 1497 196 36 11 chr9 123447115 123447241 -18824203 + AluJb SINE Alu 1 122 -190 351 0 0 0 chr9 123447241 123447280 -18824164 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1497 196 36 11 chr9 123447280 123447434 -18824010 + AluJb SINE Alu 122 288 -24 6125 207 90 43 chr9 123447434 123447549 -18823895 + L1ME LINE L1 4104 4212 -1954 2421 78 3 0 chr9 123447549 123447845 -18823599 + AluSp SINE Alu 1 297 -16 6125 207 90 43 chr9 123447845 123448493 -18822951 + L1ME LINE L1 4212 4828 -1338 2241 92 0 13 chr9 123448493 123448797 -18822647 + AluSg SINE Alu 1 300 -10 6125 207 90 43 chr9 123448797 123449365 -18822079 + L1ME LINE L1 4828 5587 -579 1852 189 0 3 chr9 123449365 123449677 -18821767 - AluJo SINE Alu -1 311 1 1361 97 0 0 chr9 123449682 123449858 -18821586 - AluY SINE Alu -8 303 128 983 149 34 6 chr9 123449858 123450033 -18821411 + L1ME LINE L1 5590 5769 -397 1704 179 3 24 chr9 123450112 123450409 -18821035 + AluJb SINE Alu 1 291 -21 2470 69 0 3 chr9 123450414 123450718 -18820726 + AluSg SINE Alu 1 303 -7 649 151 48 32 chr9 123450956 123451082 -18820362 + AluJb SINE Alu 1 128 -184 462 324 42 28 chr9 123451570 123451783 -18819661 - MIR SINE MIR 0 262 47 1466 166 27 34 chr9 123451909 123451924 -18819520 - AluJb SINE Alu -17 295 281 243 61 0 0 chr9 123451924 123451957 -18819487 + (TG)n Simple_repeat Simple_repeat 1 33 0 1466 166 27 34 chr9 123451957 123452237 -18819207 - AluJb SINE Alu -31 281 2 3756 104 12 27 chr9 123452690 123453275 -18818169 - L1MA2 LINE L1 -254 6050 5475 2023 146 0 3 chr9 123453279 123453581 -18817863 - AluSx SINE Alu -11 301 1 9386 134 112 34 chr9 123453581 123453664 -18817780 - L1M1 LINE L1 -5133 2432 2357 6273 46 1 3 chr9 123453664 123454442 -18817002 + L1PA5 LINE L1 5374 6150 -4 9386 134 112 34 chr9 123454442 123454469 -18816975 - L1M1 LINE L1 -5208 2357 2334 2384 85 0 0 chr9 123454469 123454762 -18816682 + AluSx SINE Alu 7 299 -13 9386 134 112 34 chr9 123454762 123456322 -18815122 - L1M1 LINE L1 -5231 2334 629 198 325 153 19 chr9 123456701 123456835 -18814609 + MIR SINE MIR 47 206 -56 194 0 0 37 chr9 123456835 123456862 -18814582 + (CAA)n Simple_repeat Simple_repeat 2 27 0 198 325 153 19 chr9 123456862 123456884 -18814560 + MIR SINE MIR 206 224 -38 222 37 0 0 chr9 123457380 123457407 -18814037 + (CA)n Simple_repeat Simple_repeat 2 28 0 1689 162 25 0 chr9 123457411 123457689 -18813755 - AluJo SINE Alu -27 285 1 440 286 39 39 chr9 123457933 123458111 -18813333 + MER5A DNA MER1_type 2 179 -10 2200 129 22 22 chr9 123458130 123458493 -18812951 + THE1C LTR MaLR 2 364 -11 1328 155 0 26 chr9 123458504 123458730 -18812714 + AluJb SINE Alu 87 306 -6 26 0 0 0 chr9 123458739 123458765 -18812679 + AT_rich Low_complexity Low_complexity 1 26 0 225 209 88 66 chr9 123458791 123458882 -18812562 - MIR SINE MIR -84 178 86 2503 62 0 3 chr9 123459637 123459941 -18811503 - AluY SINE Alu -8 303 1 3254 145 43 34 chr9 123460428 123460895 -18810549 + L1MB2 LINE L1 5538 6014 -157 2201 79 41 3 chr9 123460895 123461185 -18810259 - AluY SINE Alu -10 301 1 3254 145 43 34 chr9 123461185 123461344 -18810100 + L1MB2 LINE L1 6014 6170 -1 190 153 141 141 chr9 123461412 123461497 -18809947 - MIR3 SINE MIR -16 192 108 186 43 0 0 chr9 123461755 123461778 -18809666 + (TG)n Simple_repeat Simple_repeat 2 24 0 294 265 60 66 chr9 123461947 123462098 -18809346 + L1ME3 LINE L1 5511 5582 -580 272 273 152 0 chr9 123462100 123462199 -18809245 + MER5A DNA MER1_type 69 182 -7 358 249 106 57 chr9 123462234 123462478 -18808966 + L1ME3 LINE L1 5680 5943 -219 351 0 0 0 chr9 123462478 123462517 -18808927 + (TG)n Simple_repeat Simple_repeat 2 40 0 358 249 106 57 chr9 123462517 123462573 -18808871 + L1ME3 LINE L1 5943 5995 -167 210 171 0 0 chr9 123462573 123462608 -18808836 + A-rich Low_complexity Low_complexity 1 35 0 435 38 0 0 chr9 123462938 123462991 -18808453 + (CA)n Simple_repeat Simple_repeat 2 54 0 683 241 14 102 chr9 123463249 123463543 -18807901 - L2 LINE L2 0 3313 3046 476 354 141 29 chr9 123463764 123464381 -18807063 - L2 LINE L2 -1 3271 2589 21 36 0 0 chr9 123465715 123465743 -18805701 + AT_rich Low_complexity Low_complexity 1 28 0 191 300 75 25 chr9 123465814 123465894 -18805550 + MIR SINE MIR 84 167 -95 298 291 0 39 chr9 123466061 123466188 -18805256 + L1MC5 LINE L1 7792 7913 -48 386 270 20 5 chr9 123466431 123466593 -18804851 - MIR SINE MIR -5 257 15 244 291 45 33 chr9 123466730 123466845 -18804599 + MIR SINE MIR 26 138 -70 327 274 230 0 chr9 123466922 123467035 -18804409 + L2 LINE L2 3125 3263 -9 542 310 82 83 chr9 123467314 123467893 -18803551 + L2 LINE L2 2686 3265 -7 261 180 0 0 chr9 123468083 123468133 -18803311 + A-rich Low_complexity Low_complexity 1 50 0 439 231 84 38 chr9 123469016 123469209 -18802235 + MIR SINE MIR 19 221 -41 194 254 84 14 chr9 123469255 123469326 -18802118 - MIR SINE MIR -4 258 183 325 201 0 188 chr9 123469765 123469919 -18801525 - L2 LINE L2 0 3313 3189 2328 98 3 3 chr9 123470131 123470437 -18801007 + AluSg SINE Alu 1 306 -4 806 283 141 43 chr9 123470605 123471072 -18800372 + LTR67 LTR ERVL 44 556 -1 195 214 0 0 chr9 123471073 123471115 -18800329 - L2 LINE L2 -296 2976 2935 435 309 35 35 chr9 123471131 123471361 -18800083 + MIR SINE MIR 7 236 -26 1970 158 0 0 chr9 123471892 123472190 -18799254 - AluJb SINE Alu -14 298 1 275 259 25 0 chr9 123472842 123472923 -18798521 - MIR SINE MIR -85 177 95 245 205 51 64 chr9 123473514 123473592 -18797852 - MIR SINE MIR -22 240 164 1599 178 29 52 chr9 123474243 123474552 -18796892 + AluJo SINE Alu 1 302 -10 1988 122 3 56 chr9 123475607 123475729 -18795715 + AluJb SINE Alu 1 128 -184 189 0 0 0 chr9 123475729 123475750 -18795694 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1988 122 3 56 chr9 123475750 123475947 -18795497 + AluJb SINE Alu 128 303 -9 2432 68 3 0 chr9 123476574 123476869 -18794575 + AluY SINE Alu 5 300 -11 262 212 66 76 chr9 123477219 123477417 -18794027 - L1ME4a LINE L1 0 6121 5926 301 298 138 0 chr9 123478090 123478184 -18793260 - L2 LINE L2 -4 3309 3203 287 307 48 36 chr9 123478201 123478367 -18793077 + MIR SINE MIR 90 257 -5 2270 116 0 0 chr9 123478498 123478792 -18792652 + AluSx SINE Alu 1 294 -18 2233 115 0 0 chr9 123478859 123479155 -18792289 + AluSx SINE Alu 1 296 -16 2099 160 0 0 chr9 123481360 123481672 -18789772 + AluJb SINE Alu 1 312 0 682 221 138 10 chr9 123481823 123482018 -18789426 + MIR SINE MIR 20 239 -23 744 183 118 142 chr9 123482041 123482379 -18789065 + MER46C DNA MER2_type 4 333 -5 2080 124 0 7 chr9 123482568 123482879 -18788565 + AluSx SINE Alu 1 309 0 1979 115 7 28 chr9 123482883 123483205 -18788239 + AluSx SINE Alu 1 316 0 937 294 60 50 chr9 123483670 123483952 -18787492 + L3 LINE CR1 857 1148 -429 1941 132 40 0 chr9 123483952 123484248 -18787196 + AluSg SINE Alu 1 308 -2 937 294 60 50 chr9 123484248 123484500 -18786944 + L3 LINE CR1 1148 1396 -181 2172 84 59 3 chr9 123484573 123484860 -18786584 + AluSq SINE Alu 1 303 -10 2311 100 17 0 chr9 123484954 123485254 -18786190 + AluSp SINE Alu 1 305 -8 558 237 54 55 chr9 123486022 123486323 -18785121 + L1MC4a LINE L1 5724 6017 -104 309 89 0 0 chr9 123486640 123486685 -18784759 + (CA)n Simple_repeat Simple_repeat 2 46 0 828 226 24 71 chr9 123486716 123486782 -18784662 - MIR SINE MIR -22 240 172 1961 165 0 3 chr9 123486782 123487091 -18784353 + AluJb SINE Alu 1 308 -4 828 226 24 71 chr9 123487091 123487276 -18784168 - MIR SINE MIR -90 172 1 273 75 0 0 chr9 123489058 123489098 -18782346 + (CGG)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr9 123489282 123489308 -18782136 + GC_rich Low_complexity Low_complexity 1 26 0 180 161 0 0 chr9 123489854 123489885 -18781559 - MIR SINE MIR -115 147 117 273 230 47 108 chr9 123490135 123490283 -18781161 + MIR SINE MIR 121 259 -3 240 325 18 6 chr9 123490760 123490929 -18780515 + (TG)n Simple_repeat Simple_repeat 2 172 0 262 214 181 60 chr9 123491498 123491590 -18779854 + MIR SINE MIR 31 110 -152 2241 102 0 0 chr9 123491590 123491885 -18779559 - AluSq SINE Alu -18 295 1 262 214 181 60 chr9 123491885 123492005 -18779439 + MIR SINE MIR 110 262 0 304 276 57 0 chr9 123492598 123492703 -18778741 - MIR SINE MIR -2 260 150 897 168 28 10 chr9 123492703 123492985 -18778459 - MLT1A1 LTR MaLR 0 365 3 526 204 71 0 chr9 123492986 123493099 -18778345 - MIR SINE MIR -107 155 35 2306 93 0 7 chr9 123493440 123493729 -18777715 + AluSg SINE Alu 1 287 -23 316 299 127 0 chr9 123493755 123493889 -18777555 - MIR SINE MIR -25 237 87 643 229 161 96 chr9 123494303 123494562 -18776882 + L1ME4a LINE L1 5327 5568 -553 2319 97 3 0 chr9 123494562 123494861 -18776583 - AluSp SINE Alu -13 300 1 643 229 161 96 chr9 123494861 123494892 -18776552 + L1ME4a LINE L1 5568 5596 -525 1885 148 7 29 chr9 123494892 123495202 -18776242 + AluJb SINE Alu 1 303 -9 643 229 161 96 chr9 123495202 123495377 -18776067 + L1ME4a LINE L1 5596 5823 -298 890 73 73 8 chr9 123497084 123497207 -18774237 - AluSc SINE Alu -178 131 1 196 146 146 0 chr9 123497445 123497493 -18773951 - MIR SINE MIR -75 187 133 189 0 0 0 chr9 123497699 123497720 -18773724 + (A)n Simple_repeat Simple_repeat 1 21 0 1973 145 7 7 chr9 123497732 123498036 -18773408 + AluSx SINE Alu 7 310 -2 530 238 29 17 chr9 123498112 123498284 -18773160 + L1ME4a LINE L1 5939 6112 -9 243 237 0 17 chr9 123498798 123498857 -18772587 - MIR SINE MIR -10 252 195 1622 153 57 8 chr9 123498895 123499157 -18772287 - AluJo SINE Alu -31 281 7 191 379 10 10 chr9 123499185 123499288 -18772156 - MIR SINE MIR -93 169 67 568 239 145 0 chr9 123499392 123499600 -18771844 + MIR SINE MIR 20 255 -7 231 295 101 27 chr9 123499987 123500136 -18771308 - MIR3 SINE MIR -19 189 30 1815 88 40 0 chr9 123500367 123500648 -18770796 + AluSx SINE Alu 47 336 0 215 254 74 57 chr9 123501087 123501209 -18770235 + MIR SINE MIR 60 183 -79 472 281 300 5 chr9 123501210 123501872 -18769572 - L2 LINE L2 -2 3311 2446 289 343 143 28 chr9 123501895 123502146 -18769298 - L2 LINE L2 0 3272 2993 210 71 0 0 chr9 123502196 123502224 -18769220 + (TAG)n Simple_repeat Simple_repeat 3 30 0 747 231 49 53 chr9 123502224 123502460 -18768984 - MIR SINE MIR -9 253 17 399 284 9 9 chr9 123502789 123502905 -18768539 + MIR SINE MIR 34 149 -59 2022 115 0 11 chr9 123502918 123503196 -18768248 - AluSx SINE Alu -18 294 20 303 204 0 9 chr9 123503984 123504077 -18767367 - MER53 DNA DNA 0 189 1 302 286 17 114 chr9 123505106 123505158 -18766286 - MIR3 SINE MIR -9 199 144 2454 77 3 0 chr9 123505158 123505458 -18765986 + AluSp SINE Alu 1 301 -12 302 286 17 114 chr9 123505458 123505580 -18765864 - MIR3 SINE MIR -64 144 42 572 310 95 30 chr9 123506294 123506694 -18764750 - L2 LINE L2 -36 3277 2852 2006 142 10 10 chr9 123507125 123507435 -18764009 - AluSx SINE Alu -2 310 1 2069 134 7 0 chr9 123507586 123507877 -18763567 + AluSx SINE Alu 1 293 -19 2139 129 7 0 chr9 123508504 123508806 -18762638 + AluSx SINE Alu 1 304 -8 27 0 0 0 chr9 123509216 123509243 -18762201 + AT_rich Low_complexity Low_complexity 1 27 0 477 263 70 62 chr9 123509578 123509821 -18761623 - MIR SINE MIR -1 261 17 415 301 115 14 chr9 123510410 123510619 -18760825 + MIR SINE MIR 21 250 -12 338 219 105 18 chr9 123511080 123511194 -18760250 + MIR SINE MIR 31 154 -108 359 283 86 25 chr9 123511365 123511450 -18759994 - L1MC4a LINE L1 -1881 5927 5849 2265 118 0 0 chr9 123511450 123511755 -18759689 - AluSq SINE Alu -8 305 1 2232 163 42 28 chr9 123511762 123512234 -18759210 - L1MB7 LINE L1 0 6184 5706 359 283 86 25 chr9 123512234 123512338 -18759106 - L1MC4a LINE L1 -1964 5844 5718 1683 151 41 4 chr9 123513232 123513524 -18757920 - AluSx SINE Alu 0 302 1 1994 113 18 0 chr9 123513553 123513827 -18757617 + AluSx SINE Alu 21 299 -13 2462 59 0 37 chr9 123513828 123514149 -18757295 + AluY SINE Alu 1 309 -2 21 0 0 0 chr9 123514361 123514382 -18757062 + AT_rich Low_complexity Low_complexity 1 21 0 2103 90 48 3 chr9 123514724 123515014 -18756430 + AluSx SINE Alu 1 303 -9 484 215 52 75 chr9 123515141 123515305 -18756139 - MLT1J1 LTR MaLR -299 147 1 392 305 30 30 chr9 123515510 123515677 -18755767 + L1ME4a LINE L1 5430 5596 -525 1065 155 0 6 chr9 123515679 123515847 -18755597 + FRAM SINE Alu 1 164 -12 880 252 137 12 chr9 123515852 123516268 -18755176 + L1ME4a LINE L1 5643 6110 -11 472 276 63 1 chr9 123516323 123516469 -18754975 - MIR SINE MIR -41 167 11 310 296 78 43 chr9 123516758 123516873 -18754571 - L2 LINE L2 0 3272 3154 891 113 0 50 chr9 123516921 123517062 -18754382 - AluJo SINE Alu -178 134 1 459 208 67 8 chr9 123517170 123517290 -18754154 - MIR SINE MIR -74 188 62 2249 73 22 0 chr9 123517481 123517776 -18753668 - AluSc SINE Alu 0 301 1 879 118 0 8 chr9 123518120 123518239 -18753205 + AluSq/x SINE Alu 1 118 -194 259 322 78 43 chr9 123518308 123518423 -18753021 + L2 LINE L2 3154 3272 0 632 94 0 0 chr9 123518468 123518553 -18752891 + AluSg/x SINE Alu 217 301 -8 1067 202 211 39 chr9 123518569 123519003 -18752441 + MLT1H LTR MaLR 1 547 -2 660 306 50 64 chr9 123519032 123519472 -18751972 - L2 LINE L2 -4 3309 2876 2241 124 0 0 chr9 123519554 123519860 -18751584 + AluSg SINE Alu 1 306 -4 3763 133 13 1 chr9 123520128 123520422 -18751022 + L1PA14 LINE L1 5180 5469 -692 2213 109 0 10 chr9 123520422 123520726 -18750718 + AluSq SINE Alu 1 301 -12 3763 133 13 1 chr9 123520726 123521066 -18750378 + L1PA14 LINE L1 5469 5829 -332 544 158 0 0 chr9 123521066 123521142 -18750302 + AluS SINE Alu 1 76 -236 3582 112 100 84 chr9 123521143 123521976 -18749468 + pTR5 LTR ERV1 871 2025 -413 304 265 10 0 chr9 123521976 123522074 -18749370 + LTR30 LTR ERV1 544 642 -80 1542 76 5 14 chr9 123522077 123522300 -18749144 + pTR5 LTR ERV1 172 392 -2046 1909 101 16 0 chr9 123522300 123522557 -18748887 + AluSx SINE Alu 47 307 -5 2378 73 0 7 chr9 123522965 123523267 -18748177 + AluY SINE Alu 1 300 -11 1794 158 16 16 chr9 123523274 123523578 -18747866 + AluJo SINE Alu 1 304 -8 2772 232 57 39 chr9 123523889 123524038 -18747406 - L1ME1 LINE L1 -5 6161 6016 1862 126 67 88 chr9 123524038 123524123 -18747321 - MLT1A1 LTR MaLR 0 365 280 2019 130 0 20 chr9 123524123 123524422 -18747022 - AluSx SINE Alu -19 293 1 1862 126 67 88 chr9 123524422 123524709 -18746735 - MLT1A1 LTR MaLR -85 280 1 2772 232 57 39 chr9 123524709 123525059 -18746385 - L1ME1 LINE L1 -150 6016 5641 1521 134 0 0 chr9 123525059 123525275 -18746169 - AluSg/x SINE Alu -11 301 86 2772 232 57 39 chr9 123525275 123525551 -18745893 - L1ME1 LINE L1 -525 5641 5371 2209 103 3 7 chr9 123525559 123525859 -18745585 - AluSq SINE Alu -14 299 1 1255 235 69 35 chr9 123525861 123526283 -18745161 - L1MC5 LINE L1 -446 7515 7080 226 268 93 71 chr9 123526266 123526632 -18744812 - HAL1b LINE L1 -974 374 1 * 1822 154 7 7 chr9 123526633 123526918 -18744526 - AluJb SINE Alu -25 287 3 216 0 0 0 chr9 123527687 123527711 -18743733 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2058 74 0 30 chr9 123527720 123527989 -18743455 - AluY SINE Alu -50 261 1 239 364 140 24 chr9 123528235 123528485 -18742959 + L2 LINE L2 2994 3272 0 26 50 0 0 chr9 123528510 123528550 -18742894 + AT_rich Low_complexity Low_complexity 1 40 0 2449 79 0 0 chr9 123528559 123528863 -18742581 + AluY SINE Alu 1 304 -7 2446 86 0 0 chr9 123528932 123529235 -18742209 - AluSx SINE Alu -8 304 2 2687 107 45 36 chr9 123529238 123529436 -18742008 - L1P4 LINE L1 -470 5691 5496 2059 128 0 26 chr9 123529436 123529741 -18741703 - AluSx SINE Alu -15 297 1 1909 176 0 0 chr9 123529750 123530057 -18741387 - AluJb SINE Alu -5 307 1 2687 107 45 36 chr9 123530057 123530368 -18741076 - L1P4 LINE L1 -672 5489 5171 1895 98 79 0 chr9 123530448 123530714 -18740730 + AluSq SINE Alu 1 287 -26 563 170 176 55 chr9 123530850 123531015 -18740429 - MER5A DNA MER1_type -4 185 1 231 88 0 0 chr9 123531049 123531083 -18740361 + (TCCA)n Simple_repeat Simple_repeat 2 35 0 273 302 109 36 chr9 123531990 123532364 -18739080 + L1MC/D LINE L1 5408 5816 -338 229 239 148 64 chr9 123533428 123533568 -18737876 + MIR SINE MIR 34 188 -67 2237 88 3 0 chr9 123535156 123535439 -18736005 + AluSc SINE Alu 1 284 -25 199 0 65 0 chr9 123535442 123535473 -18735971 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 332 174 29 29 chr9 123536562 123536631 -18734813 + AluJ/FRAM SINE Alu 228 296 -6 2382 112 0 0 chr9 123536865 123537178 -18734266 + AluSq SINE Alu 1 313 0 316 279 119 41 chr9 123537807 123537822 -18733622 - MIR3 SINE MIR -36 172 160 995 236 103 17 chr9 123537822 123538123 -18733321 + MER102a DNA MER1_type 3 329 -1 316 279 119 41 chr9 123538123 123538268 -18733176 - MIR3 SINE MIR -48 160 1 251 303 26 13 chr9 123538506 123538582 -18732862 - MIR3 SINE MIR -23 185 109 2283 107 0 0 chr9 123539903 123540202 -18731242 - AluSx SINE Alu -13 299 1 283 359 13 39 chr9 123540212 123540368 -18731076 - MIR3 SINE MIR -3 205 54 434 268 110 73 chr9 123540918 123541190 -18730254 + L3 LINE CR1 1097 1378 -199 228 216 181 64 chr9 123541201 123541260 -18730184 - MIR SINE MIR -9 253 202 2263 95 10 7 chr9 123541260 123541566 -18729878 - AluSc SINE Alu -1 308 2 228 216 181 64 chr9 123541566 123541677 -18729767 - MIR SINE MIR -60 202 63 375 240 70 10 chr9 123542390 123542490 -18728954 - L2 LINE L2 0 3313 3208 * 464 306 124 31 chr9 123542480 123542803 -18728641 + L2 LINE L2 2331 2683 -631 630 292 63 99 chr9 123542894 123543288 -18728156 + L2 LINE L2 2888 3267 -5 2200 108 19 3 chr9 123543352 123543659 -18727785 + AluSx SINE Alu 1 312 0 253 325 13 0 chr9 123544599 123544676 -18726768 + MIR3 SINE MIR 93 170 -38 2499 60 0 0 chr9 123544902 123545200 -18726244 + AluY SINE Alu 1 298 -13 246 153 34 51 chr9 123545302 123545361 -18726083 + MER103 DNA DNA 22 79 -87 362 355 29 7 chr9 123545428 123545566 -18725878 - MIR SINE MIR -120 142 2 275 274 12 0 chr9 123545575 123545659 -18725785 + MER103 DNA DNA 79 163 -3 269 342 42 17 chr9 123545816 123545936 -18725508 - MIR3 SINE MIR -5 203 81 269 305 164 8 chr9 123546419 123546547 -18724897 + MIR SINE MIR 3 150 -112 2384 104 0 0 chr9 123546584 123546891 -18724553 + AluSx SINE Alu 1 307 -5 2243 107 7 0 chr9 123547020 123547320 -18724124 + AluSg SINE Alu 1 302 -8 1069 153 0 12 chr9 123547848 123548011 -18723433 + FRAM SINE Alu 1 161 -5 287 315 42 35 chr9 123548192 123548335 -18723109 + MIR SINE MIR 48 191 -71 232 288 15 0 chr9 123548570 123548636 -18722808 - MIR SINE MIR -65 143 77 1571 160 17 61 chr9 123548716 123548861 -18722583 + AluJo SINE Alu 1 128 -184 2396 94 0 3 chr9 123548861 123549170 -18722274 + AluSq SINE Alu 1 308 -5 1571 160 17 61 chr9 123549170 123549318 -18722126 + AluJo SINE Alu 128 281 -31 669 335 108 48 chr9 123549337 123549871 -18721573 + L2 LINE L2 2465 3060 -212 1820 118 64 7 chr9 123549871 123550151 -18721293 - AluSx SINE Alu -16 296 1 669 335 108 48 chr9 123550151 123550317 -18721127 + L2 LINE L2 3060 3215 -57 318 221 39 13 chr9 123551536 123551613 -18719831 + L2 LINE L2 3223 3301 -12 436 361 79 9 chr9 123551744 123551960 -18719484 - L2 LINE L2 -177 3095 2865 322 319 21 0 chr9 123552196 123552290 -18719154 - L2 LINE L2 -35 3237 3142 252 100 0 0 chr9 123552880 123552920 -18718524 + (GA)n Simple_repeat Simple_repeat 1 40 0 256 318 71 48 chr9 123553464 123553590 -18717854 - MIR SINE MIR -62 146 17 267 295 139 23 chr9 123554457 123554586 -18716858 - MER5A DNA MER1_type -45 144 1 1053 182 141 31 chr9 123554594 123554677 -18716767 - MER33 DNA MER1_type -2261 324 252 1793 145 55 0 chr9 123554677 123554967 -18716477 + AluSx SINE Alu 1 306 -6 1556 99 14 14 chr9 123554970 123555183 -18716261 + AluSg/x SINE Alu 91 303 -9 1053 182 141 31 chr9 123555183 123555386 -18716058 - MER33 DNA MER1_type -2334 251 2 259 299 45 31 chr9 123555519 123555667 -18715777 - L2 LINE L2 0 3313 3080 265 221 117 0 chr9 123555936 123556013 -18715431 - MER58B DNA MER1_type -10 331 246 233 205 0 0 chr9 123556009 123556048 -18715396 - MER58B DNA MER1_type -302 39 1 * 217 366 21 0 chr9 123556291 123556384 -18715060 - L2 LINE L2 -594 2720 2626 1215 127 27 127 chr9 123556395 123556437 -18715007 + L1MB3 LINE L1 5765 5810 -373 513 84 0 0 chr9 123556437 123556508 -18714936 + (CA)n Simple_repeat Simple_repeat 2 72 0 1215 127 27 127 chr9 123556508 123556546 -18714898 + L1MB3 LINE L1 5810 5850 -333 2434 88 0 0 chr9 123556546 123556853 -18714591 + AluSp SINE Alu 1 307 -6 1215 127 27 127 chr9 123556853 123556992 -18714452 + L1MB3 LINE L1 5850 5950 -233 2179 105 14 0 chr9 123556992 123557286 -18714158 + AluSx SINE Alu 1 298 -14 1215 127 27 127 chr9 123557286 123557364 -18714080 + L1MB3 LINE L1 5950 6034 -149 1685 188 0 43 chr9 123557365 123557689 -18713755 + AluJb SINE Alu 1 310 -2 997 128 23 17 chr9 123557746 123557918 -18713526 + L1MB3 LINE L1 6011 6183 0 642 270 47 14 chr9 123558273 123558484 -18712960 + MER102a DNA MER1_type 95 312 -18 1606 187 0 10 chr9 123559140 123559440 -18712004 + AluJb SINE Alu 6 302 -10 2229 90 7 7 chr9 123559443 123559742 -18711702 + AluSx SINE Alu 1 299 -13 350 78 0 0 chr9 123559818 123559869 -18711575 - Alu SINE Alu -6 296 246 319 323 57 44 chr9 123559974 123560385 -18711059 - HAL1b LINE L1 -847 501 81 1817 173 3 6 chr9 123560385 123560698 -18710746 - AluJo SINE Alu 0 312 1 319 323 57 44 chr9 123560698 123560781 -18710663 - HAL1b LINE L1 -1267 81 1 1775 145 3 17 chr9 123560882 123561172 -18710272 - AluSx SINE Alu -12 300 15 492 310 123 0 chr9 123561553 123561740 -18709704 + L2 LINE L2 2564 2773 -541 1991 116 36 7 chr9 123561770 123562071 -18709373 - AluSx SINE Alu -2 310 1 832 176 0 0 chr9 123562083 123562214 -18709230 - FLAM_C SINE Alu -12 131 1 225 333 0 0 chr9 123562448 123562529 -18708915 - L1MC/D LINE L1 -851 5508 5428 308 296 106 61 chr9 123562694 123562958 -18708486 - LTR16A LTR ERVL -158 292 17 195 268 18 0 chr9 123562979 123563035 -18708409 - MER5A DNA MER1_type -6 183 127 1992 143 0 3 chr9 123563035 123563322 -18708122 + AluJb SINE Alu 1 286 -26 276 158 0 0 chr9 123563322 123563379 -18708065 + (CA)n Simple_repeat Simple_repeat 1 57 0 795 193 0 0 chr9 123563379 123563514 -18707930 - MER5A DNA MER1_type -53 136 2 315 321 31 37 chr9 123563641 123563803 -18707641 - L2 LINE L2 -504 2810 2650 2007 43 0 0 chr9 123563948 123564182 -18707262 - L1P2 LINE L1 -376 5778 5545 238 339 85 23 chr9 123564334 123564464 -18706980 - MIR3 SINE MIR -69 139 2 674 208 36 30 chr9 123565184 123565352 -18706092 - MER5B DNA MER1_type -8 170 2 1584 161 102 4 chr9 123565533 123565807 -18705637 - AluJo SINE Alu -11 301 1 2268 222 32 19 chr9 123566321 123566915 -18704529 - L1M4 LINE L1 -1821 4325 3724 1533 174 41 27 chr9 123567139 123567268 -18704176 + AluJb SINE Alu 1 127 -185 2461 70 0 3 chr9 123567268 123567568 -18703876 + AluSx SINE Alu 1 299 -13 1533 174 41 27 chr9 123567568 123567731 -18703713 + AluJb SINE Alu 127 297 -15 731 245 92 40 chr9 123568287 123568536 -18702908 - MIR SINE MIR 0 262 1 702 168 36 15 chr9 123568898 123569035 -18702409 - L1M4 LINE L1 -369 5815 5676 * 1312 145 46 140 chr9 123569028 123569158 -18702286 - L1M4 LINE L1 -367 5817 5676 280 149 0 21 chr9 123569158 123569205 -18702239 - Alu SINE Alu -12 290 245 1312 145 46 140 chr9 123569205 123569400 -18702044 - L1M4 LINE L1 -508 5676 5481 881 174 6 45 chr9 123569400 123569578 -18701866 - FRAM SINE Alu -5 171 1 5871 141 31 98 chr9 123569610 123571072 -18700372 - L1MC3 LINE L1 -24 7761 6380 610 134 0 31 chr9 123571088 123571185 -18700259 + LTR48 LTR ERV1 1 94 -693 1609 173 3 14 chr9 123571299 123571588 -18699856 - AluJo SINE Alu -16 296 11 2264 71 47 10 chr9 123572036 123572332 -18699112 + AluSx SINE Alu 1 307 -5 2001 134 44 77 chr9 123572460 123572848 -18698596 + THE1C LTR MaLR 1 375 0 31 26 0 0 chr9 123573143 123573181 -18698263 + AT_rich Low_complexity Low_complexity 1 38 0 2178 100 3 3 chr9 123573327 123573617 -18697827 - AluSx SINE Alu -22 290 1 188 138 0 0 chr9 123573635 123573664 -18697780 - MIR SINE MIR -142 120 92 329 309 35 16 chr9 123575365 123575532 -18695912 - MIR SINE MIR -62 146 19 278 264 69 0 chr9 123575772 123575859 -18695585 + L1MC5 LINE L1 7823 7915 -46 2345 84 0 19 chr9 123576485 123576796 -18694648 + AluY SINE Alu 1 305 -6 201 74 0 0 chr9 123576868 123576895 -18694549 + (CATA)n Simple_repeat Simple_repeat 4 30 0 585 14 56 0 chr9 123577050 123577121 -18694323 + L1PA6 LINE L1 6077 6151 -3 336 314 58 0 chr9 123577506 123577627 -18693817 + L3 LINE CR1 1344 1471 -106 272 257 102 17 chr9 123577633 123577760 -18693684 + MIR SINE MIR 3 143 -65 286 252 29 58 chr9 123578180 123578283 -18693161 + MIR3 SINE MIR 5 104 -104 255 260 79 47 chr9 123578324 123578451 -18692993 - MIR SINE MIR -65 197 67 755 222 19 23 chr9 123578916 123579115 -18692329 + MIR SINE MIR 65 262 0 364 275 28 18 chr9 123579950 123580059 -18691385 - MIR SINE MIR -73 189 80 314 254 212 16 chr9 123580048 123580241 -18691203 - L2 LINE L2 -4 3309 3079 * 183 283 174 22 chr9 123580262 123580400 -18691044 + MIR SINE MIR 56 214 -48 625 270 53 16 chr9 123580430 123580619 -18690825 - MIR SINE MIR -36 226 31 1804 144 21 10 chr9 123580631 123580795 -18690649 - AluJb SINE Alu -17 295 125 369 0 0 0 chr9 123580795 123580836 -18690608 + (TG)n Simple_repeat Simple_repeat 2 42 0 1804 144 21 10 chr9 123580836 123580962 -18690482 - AluJb SINE Alu -187 125 2 887 202 88 5 chr9 123581039 123581232 -18690212 + MER3 DNA MER1_type 1 209 0 2299 104 0 0 chr9 123583063 123583360 -18688084 + AluSx SINE Alu 1 297 -15 352 216 20 0 chr9 123583360 123583462 -18687982 + GA-rich Low_complexity Low_complexity 1 104 0 469 283 43 78 chr9 123583490 123583512 -18687932 + MIR SINE MIR 13 34 -228 2332 97 0 0 chr9 123583512 123583812 -18687632 + AluSx SINE Alu 1 300 -12 469 283 43 78 chr9 123583812 123584047 -18687397 + MIR SINE MIR 34 261 -1 298 316 94 26 chr9 123584614 123584731 -18686713 - L2 LINE L2 -11 3261 3137 1971 128 0 44 chr9 123586233 123586405 -18685039 - AluJb SINE Alu -7 305 152 2372 86 0 3 chr9 123586405 123586707 -18684737 - AluSx SINE Alu -11 301 1 1971 128 0 44 chr9 123586707 123586853 -18684591 - AluJb SINE Alu -160 152 1 3936 155 32 33 chr9 123586881 123587631 -18683813 - L1MA8 LINE L1 0 6527 5779 9695 156 28 76 chr9 123587642 123587746 -18683698 - L1MA8 LINE L1 -743 5639 5532 1903 137 3 3 chr9 123587746 123588053 -18683391 + AluSx SINE Alu 1 307 0 9695 156 28 76 chr9 123588053 123589120 -18682324 - L1MA8 LINE L1 -850 5532 4415 2427 94 0 0 chr9 123589120 123589428 -18682016 - AluSx SINE Alu -2 310 3 9695 156 28 76 chr9 123589428 123589575 -18681869 - L1MA8 LINE L1 -1967 4415 4262 1810 168 4 0 chr9 123589575 123589855 -18681589 - AluJb SINE Alu -31 281 1 9695 156 28 76 chr9 123589855 123589875 -18681569 - L1MA8 LINE L1 -2120 4262 4243 2464 93 0 0 chr9 123589875 123590187 -18681257 - AluSx SINE Alu 0 312 1 9695 156 28 76 chr9 123590187 123591019 -18680425 - L1MA8 LINE L1 -2139 4243 3570 919 90 0 56 chr9 123591020 123591164 -18680280 - AluSx SINE Alu -5 305 170 938 247 18 21 chr9 123591164 123591443 -18680001 - LTR4 LTR ERV1 -1 595 318 396 234 120 42 chr9 123591629 123591796 -18679648 - LTR4 LTR ERV1 -396 200 21 1305 122 6 6 chr9 123591830 123592011 -18679433 - AluSx SINE Alu -131 181 1 2762 214 50 38 chr9 123592012 123592259 -18679185 - L1MA8 LINE L1 -2808 3574 3332 2224 115 0 25 chr9 123592259 123592580 -18678864 - AluSp SINE Alu 0 313 1 2762 214 50 38 chr9 123592580 123592594 -18678850 - L1MA8 LINE L1 -3050 3332 3320 2450 76 0 13 chr9 123592594 123592908 -18678536 - AluY SINE Alu -1 310 1 2762 214 50 38 chr9 123592908 123593461 -18677983 - L1MA8 LINE L1 -3062 3320 2749 3215 222 35 22 chr9 123593470 123594643 -18676801 - L1MA8 LINE L1 -4179 2203 1186 1662 173 4 7 chr9 123594643 123594959 -18676485 - AluSx SINE Alu 0 326 12 3215 222 35 22 chr9 123594959 123595178 -18676266 - L1MA8 LINE L1 -5196 1186 971 452 103 0 0 chr9 123595178 123595236 -18676208 - Alu SINE Alu -259 59 2 1672 181 36 7 chr9 123595564 123595867 -18675577 - AluJo SINE Alu 0 312 1 955 212 79 8 chr9 123595961 123596202 -18675242 + MIR SINE MIR 5 262 0 4725 148 24 52 chr9 123596249 123596578 -18674866 - L1MA5 LINE L1 -5 6295 5958 2359 85 3 0 chr9 123596578 123596873 -18674571 - AluSx SINE Alu -16 296 1 4725 148 24 52 chr9 123596873 123597463 -18673981 - L1MA5 LINE L1 -342 5958 5402 946 251 56 27 chr9 123597463 123597801 -18673643 - L1M3c LINE L1 -4835 1306 959 1223 149 28 9 chr9 123597929 123598143 -18673301 - AluJo SINE Alu -13 299 82 231 222 0 19 chr9 123598232 123598286 -18673158 - L1M3c LINE L1 -6084 57 5 315 0 0 0 chr9 123599659 123599694 -18671750 + (TG)n Simple_repeat Simple_repeat 1 35 0 2223 123 0 0 chr9 123599885 123600185 -18671259 + AluSx SINE Alu 1 300 -12 1713 173 59 110 chr9 123600389 123600785 -18670659 - MLT1C LTR MaLR 0 467 98 2006 101 18 4 chr9 123600785 123601084 -18670360 - AluSx SINE Alu 0 303 1 1713 173 59 110 chr9 123601084 123601178 -18670266 - MLT1C LTR MaLR -369 98 1 511 329 142 0 chr9 123601445 123601664 -18669780 + MIR SINE MIR 13 262 0 315 301 192 0 chr9 123601731 123601887 -18669557 + MIR SINE MIR 77 262 0 220 340 146 22 chr9 123601940 123602125 -18669319 + L2 LINE L2 2876 3083 -189 258 256 368 8 chr9 123602184 123602301 -18669143 + MIR SINE MIR 71 229 -33 1068 174 47 5 chr9 123602475 123602688 -18668756 + L1MB3 LINE L1 5962 6183 0 2043 144 3 3 chr9 123603553 123603859 -18667585 - AluSx SINE Alu -6 306 1 570 264 156 4 chr9 123604511 123604787 -18666657 + L1ME4a LINE L1 5552 5869 -252 232 230 239 9 chr9 123604874 123604987 -18666457 + L1ME LINE L1 5666 5804 -358 261 77 0 0 chr9 123605052 123605091 -18666353 - HSMAR1 DNA Mariner -1248 39 1 494 226 0 0 chr9 123605476 123605578 -18665866 + MER5A DNA MER1_type 8 109 -80 2348 65 3 10 chr9 123605841 123606135 -18665309 + AluY SINE Alu 1 292 -19 195 213 21 0 chr9 123606164 123606211 -18665233 + L2 LINE L2 3004 3051 -221 368 298 107 0 chr9 123606490 123606611 -18664833 + L2 LINE L2 3180 3313 0 226 359 68 17 chr9 123606960 123607077 -18664367 + L2 LINE L2 3125 3247 -25 380 282 40 79 chr9 123607302 123607504 -18663940 + MIR3 SINE MIR 10 203 -5 3516 135 16 19 chr9 123607777 123608340 -18663104 - L1MB3 LINE L1 -2 6181 5621 509 106 43 64 chr9 123608353 123608447 -18662997 - L1MB3 LINE L1 -635 5536 5445 369 311 108 6 chr9 123608598 123608765 -18662679 + MIR SINE MIR 33 216 -46 2031 94 74 24 chr9 123608818 123609115 -18662329 - AluSx SINE Alu 0 312 1 1479 173 71 0 chr9 123609125 123609380 -18662064 - AluJb SINE Alu -20 292 20 2228 118 10 0 chr9 123609491 123609797 -18661647 - AluSx SINE Alu -3 309 1 1869 163 3 3 chr9 123609799 123610088 -18661356 - AluSx SINE Alu -11 301 13 314 266 46 87 chr9 123610170 123610279 -18661165 - MIR SINE MIR -77 185 84 713 215 0 15 chr9 123610279 123610414 -18661030 + FLAM_A SINE Alu 1 133 0 314 266 46 87 chr9 123610414 123610477 -18660967 - MIR SINE MIR -178 84 20 363 302 143 52 chr9 123611023 123611387 -18660057 + L3 LINE CR1 1081 1477 -100 4661 152 35 24 chr9 123611822 123612396 -18659048 - L1 LINE L1 -1498 4648 4059 2314 100 0 0 chr9 123612396 123612696 -18658748 - AluY SINE Alu -11 300 1 4661 152 35 24 chr9 123612696 123613003 -18658441 - L1 LINE L1 -2087 4059 3757 263 377 31 8 chr9 123613434 123613564 -18657880 - MIR SINE MIR -60 148 16 558 274 102 30 chr9 123613594 123613897 -18657547 - L1MC5 LINE L1 -23 7938 7614 235 221 58 12 chr9 123614191 123614277 -18657167 + L1ME LINE L1 5714 5803 -361 408 278 108 31 chr9 123614325 123614402 -18657042 - MIR SINE MIR -6 256 186 2210 107 0 13 chr9 123614402 123614702 -18656742 - AluSq SINE Alu -16 297 2 408 278 108 31 chr9 123614702 123614818 -18656626 - MIR SINE MIR -76 186 48 2155 102 56 0 chr9 123614843 123615128 -18656316 - AluSg SINE Alu -9 301 1 2065 128 0 7 chr9 123615809 123616098 -18655346 - AluSx SINE Alu -25 287 1 201 108 0 0 chr9 123616234 123616271 -18655173 + (CAGT)n Simple_repeat Simple_repeat 3 39 0 1260 310 79 24 chr9 123616292 123617030 -18654414 - L2 LINE L2 -547 2767 1990 207 353 204 6 chr9 123617026 123617193 -18654251 + MIR SINE MIR 34 233 -29 * 24 0 0 0 chr9 123617286 123617310 -18654134 + AT_rich Low_complexity Low_complexity 1 24 0 863 278 0 0 chr9 123617313 123617504 -18653940 - AluJb SINE Alu -38 274 84 475 331 66 11 chr9 123617606 123617893 -18653551 - L2 LINE L2 -1022 2292 1990 219 347 204 6 chr9 123617889 123618056 -18653388 + MIR SINE MIR 34 233 -29 * 23 0 0 0 chr9 123618149 123618172 -18653272 + AT_rich Low_complexity Low_complexity 1 23 0 1403 198 0 0 chr9 123618172 123618420 -18653024 - AluJb SINE Alu -35 277 30 395 279 149 7 chr9 123619461 123619615 -18651829 + MIR SINE MIR 57 232 -30 2372 93 3 0 chr9 123619659 123619960 -18651484 - AluSx SINE Alu -9 303 2 348 341 31 23 chr9 123620213 123620342 -18651102 + L2 LINE L2 3141 3270 -2 224 207 35 17 chr9 123620433 123620491 -18650953 + GA-rich Low_complexity Low_complexity 2 60 0 573 314 110 76 chr9 123620845 123620935 -18650509 - L2 LINE L2 -1 3271 3185 2421 88 10 0 chr9 123620935 123621241 -18650203 - AluSx SINE Alu -3 309 1 2360 95 0 3 chr9 123621241 123621545 -18649899 - AluY SINE Alu -8 303 1 573 314 110 76 chr9 123621545 123622151 -18649293 - L2 LINE L2 -86 3186 2550 422 292 43 59 chr9 123622245 123622636 -18648808 + L1ME4a LINE L1 5513 5897 -224 * 1559 144 93 43 chr9 123622410 123622709 -18648735 + L1MB7 LINE L1 5645 5969 -215 2128 107 0 14 chr9 123622709 123623024 -18648420 + AluSq SINE Alu 2 312 0 1559 144 93 43 chr9 123623024 123623098 -18648346 + L1MB7 LINE L1 5969 6038 -146 2209 140 60 14 chr9 123623110 123623523 -18647921 - L1MB3 LINE L1 -16 6167 5736 776 211 49 32 chr9 123623534 123623663 -18647781 - L1MB3 LINE L1 -677 5489 5364 2440 90 0 0 chr9 123623663 123623962 -18647482 - AluSx SINE Alu -13 299 1 776 211 49 32 chr9 123623962 123624156 -18647288 - L1MB3 LINE L1 -802 5364 5165 2407 87 0 0 chr9 123624156 123624454 -18646990 - AluY SINE Alu -13 298 1 1060 80 0 0 chr9 123624454 123624579 -18646865 - AluSg SINE Alu -177 133 9 662 136 204 34 chr9 123624630 123624777 -18646667 - AluJb SINE Alu -16 296 125 503 203 25 0 chr9 123624783 123624901 -18646543 - L1MB3 LINE L1 -1034 5112 4992 * 2431 208 27 48 chr9 123624896 123625564 -18645880 + L1ME1 LINE L1 5521 6334 0 201 318 15 0 chr9 123625986 123626052 -18645392 + MIR SINE MIR 47 113 -95 285 343 94 78 chr9 123626126 123626605 -18644839 - L2 LINE L2 -50 3222 2731 219 88 0 0 chr9 123627053 123627087 -18644357 + (T)n Simple_repeat Simple_repeat 1 34 0 2191 98 3 38 chr9 123627099 123627414 -18644030 + AluSx SINE Alu 1 304 -8 1615 162 26 7 chr9 123627768 123628040 -18643404 - AluJb SINE Alu -35 277 1 2116 109 0 14 chr9 123628052 123628233 -18643211 - AluSc SINE Alu 0 312 135 2493 85 0 0 chr9 123628233 123628538 -18642906 - AluSg SINE Alu -5 305 1 2116 109 0 14 chr9 123628538 123628672 -18642772 - AluSc SINE Alu -177 135 1 238 347 45 45 chr9 123628893 123628918 -18642526 - L1MC/D LINE L1 -1927 5881 5857 2433 48 3 0 chr9 123628918 123629236 -18642208 + AluY SINE Alu 1 319 0 238 347 45 45 chr9 123629236 123629410 -18642034 - L1MC/D LINE L1 -1951 5857 5677 2828 143 40 6 chr9 123629410 123629886 -18641558 + LTR42 LTR ERVL 1 492 -3 238 347 45 45 chr9 123629886 123629994 -18641450 - L1MC/D LINE L1 -2130 5678 5571 1758 119 3 61 chr9 123631118 123631413 -18640031 + AluJb SINE Alu 1 278 -34 1705 186 0 14 chr9 123633826 123634117 -18637327 + AluJo SINE Alu 1 287 -25 280 258 66 23 chr9 123634537 123634632 -18636812 - MIR SINE MIR -101 107 5 198 283 142 19 chr9 123635630 123635736 -18635708 + L2 LINE L2 2174 2292 -1022 * 260 376 26 8 chr9 123635704 123635821 -18635623 + MER5B DNA MER1_type 60 178 0 240 371 73 39 chr9 123636171 123636376 -18635068 + L3 LINE CR1 1262 1473 -104 1956 143 3 35 chr9 123636624 123636938 -18634506 - AluSx SINE Alu -8 304 1 195 42 0 0 chr9 123636949 123636973 -18634471 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 668 203 28 7 chr9 123636973 123637116 -18634328 - Charlie1a DNA MER1_type -1308 147 2 457 244 205 0 chr9 123637154 123637281 -18634163 + MER5A DNA MER1_type 37 189 0 409 311 18 67 chr9 123637289 123637453 -18633991 - MER5B DNA MER1_type 0 178 23 304 247 149 45 chr9 123637711 123637865 -18633579 + MIR SINE MIR 36 205 -57 226 128 26 0 chr9 123638109 123638148 -18633296 - MIR SINE MIR -109 153 114 457 323 63 22 chr9 123638450 123638673 -18632771 - MIR SINE MIR 0 262 31 192 184 0 0 chr9 123640377 123640415 -18631029 + L2 LINE L2 2934 2971 -301 355 255 304 0 chr9 123640852 123641013 -18630431 - MIR SINE MIR -34 228 19 2206 111 0 0 chr9 123641148 123641427 -18630017 + AluSc SINE Alu 3 281 -28 180 0 0 0 chr9 123641427 123641447 -18629997 + (TA)n Simple_repeat Simple_repeat 2 21 0 2353 218 129 18 chr9 123641584 123642328 -18629116 - MER99 DNA DNA 0 828 2 250 242 16 16 chr9 123642380 123642442 -18629002 - MIR SINE MIR -115 93 32 235 277 159 29 chr9 123642838 123642947 -18628497 - MIR SINE MIR -65 143 33 292 258 0 15 chr9 123646171 123646237 -18625207 - MIR SINE MIR -179 83 19 423 0 0 0 chr9 123646432 123646479 -18624965 + (CA)n Simple_repeat Simple_repeat 1 47 0 1075 165 11 11 chr9 123646587 123646769 -18624675 + AluSg/x SINE Alu 131 312 0 189 0 0 0 chr9 123646852 123646873 -18624571 + (T)n Simple_repeat Simple_repeat 1 21 0 1098 102 0 20 chr9 123646893 123647040 -18624404 - AluSq/x SINE Alu -168 144 1 322 271 41 57 chr9 123648117 123648239 -18623205 - MIR3 SINE MIR -76 132 13 288 307 139 33 chr9 123648336 123648551 -18622893 - L2 LINE L2 -188 3084 2847 346 275 101 58 chr9 123648942 123649131 -18622313 + MIR SINE MIR 35 231 -31 378 238 98 0 chr9 123649207 123649329 -18622115 + MIR SINE MIR 31 164 -98 935 76 0 0 chr9 123650821 123650939 -18620505 + AluSg/x SINE Alu 190 307 -2 1627 190 61 18 chr9 123650944 123651402 -18620042 + L1 LINE L1 4256 4733 -1413 302 306 24 0 chr9 123651692 123651777 -18619667 + L2 LINE L2 3186 3272 0 189 299 0 52 chr9 123652264 123652341 -18619103 - L2 LINE L2 -295 2977 2905 221 329 53 0 chr9 123652563 123652639 -18618805 + MIR SINE MIR 71 150 -58 364 253 59 79 chr9 123652654 123652856 -18618588 + L1ME4a LINE L1 5586 5783 -338 1016 90 0 0 chr9 123652879 123653033 -18618411 + AluSg/x SINE Alu 148 301 0 286 239 179 36 chr9 123653042 123653293 -18618151 + L1ME4a LINE L1 5833 6119 -2 25 31 0 0 chr9 123653337 123653369 -18618075 + AT_rich Low_complexity Low_complexity 1 32 0 224 264 39 78 chr9 123653532 123653661 -18617783 + MIR SINE MIR 16 139 -69 1815 160 14 58 chr9 123706210 123706351 -18565093 + MLT2C1 LTR ERVL 1 147 -250 1629 116 17 9 chr9 123706351 123706583 -18564861 + AluSg/x SINE Alu 79 312 0 1815 160 14 58 chr9 123706583 123706660 -18564784 + MLT2C1 LTR ERVL 147 226 -171 2412 91 3 0 chr9 123706660 123706958 -18564486 + AluSx SINE Alu 1 299 -13 1815 160 14 58 chr9 123706958 123707101 -18564343 + MLT2C1 LTR ERVL 226 347 -50 465 34 0 0 chr9 123707105 123707164 -18564280 + (CA)n Simple_repeat Simple_repeat 2 60 0 514 182 0 0 chr9 123707164 123707252 -18564192 + Tigger5 DNA MER2_type 3 90 -2233 400 128 279 0 chr9 123707250 123707336 -18564108 + Tigger5 DNA MER2_type 2214 2323 0 * 2109 89 0 11 chr9 123707493 123707763 -18563681 - AluSx SINE Alu -45 267 1 365 291 39 16 chr9 123708109 123708236 -18563208 - LTR67 LTR ERVL 0 557 428 2355 107 0 0 chr9 123708633 123708931 -18562513 + AluSg SINE Alu 1 298 -12 1924 165 0 25 chr9 123708944 123709363 -18562081 + AluJb SINE Alu 3 413 0 268 309 16 49 chr9 123709520 123709643 -18561801 + L2 LINE L2 3154 3272 0 198 0 0 0 chr9 123709761 123709783 -18561661 + (T)n Simple_repeat Simple_repeat 1 22 0 217 191 103 0 chr9 123710213 123710281 -18561163 + L2 LINE L2 2990 3064 -208 290 294 29 22 chr9 123710306 123710442 -18561002 + L2 LINE L2 2724 2860 -454 362 183 0 12 chr9 123710715 123710797 -18560647 + CT-rich Low_complexity Low_complexity 2 82 0 572 195 35 65 chr9 123710876 123711045 -18560399 - MER5B DNA MER1_type -12 166 3 531 219 56 45 chr9 123711508 123711686 -18559758 - Charlie8 DNA MER1_type -2213 204 25 192 167 0 0 chr9 123712358 123712394 -18559050 + L2 LINE L2 3219 3254 -18 677 255 95 12 chr9 123712396 123712629 -18558815 + MIR SINE MIR 3 262 0 551 264 39 0 chr9 123713377 123713559 -18557885 + MER5A DNA MER1_type 1 189 0 33 66 0 0 chr9 123714190 123714251 -18557193 + GC_rich Low_complexity Low_complexity 1 61 0 186 271 57 0 chr9 123714293 123714363 -18557081 + L2 LINE L2 3196 3269 -3 391 250 16 19 chr9 123714528 123714675 -18556769 - MIR3 SINE MIR -88 120 14 650 167 16 0 chr9 123714794 123714920 -18556524 + AluJo/FLAM SINE Alu 3 130 -172 230 163 0 0 chr9 123714923 123714972 -18556472 + Alu SINE Alu 254 302 0 2024 127 28 0 chr9 123715156 123715440 -18556004 - AluSx SINE Alu -20 292 1 327 145 0 29 chr9 123715441 123715510 -18555934 + L1MB8 LINE L1 6112 6178 0 676 255 10 21 chr9 123715512 123715704 -18555740 + MIR SINE MIR 60 249 -13 284 272 33 0 chr9 123715707 123715799 -18555645 - MIR SINE MIR 0 262 168 2802 26 0 6 chr9 123715927 123716240 -18555204 - AluY SINE Alu 0 311 1 250 302 151 8 chr9 123716497 123716623 -18554821 + MIR SINE MIR 38 181 -81 1037 179 58 40 chr9 123717003 123717184 -18554260 - MER33 DNA MER1_type -2262 323 134 2240 114 3 3 chr9 123717184 123717491 -18553953 + AluSx SINE Alu 1 307 -5 1037 179 58 40 chr9 123717491 123717583 -18553861 - MER33 DNA MER1_type -2451 134 45 2237 116 0 0 chr9 123717611 123717904 -18553540 - AluSx SINE Alu -19 293 1 497 314 41 33 chr9 123718154 123718396 -18553048 + MIR SINE MIR 18 261 -1 2306 107 0 0 chr9 123718404 123718704 -18552740 + AluSx SINE Alu 1 300 -12 2463 79 10 3 chr9 123718704 123719007 -18552437 + AluY SINE Alu 1 305 -6 2289 112 0 0 chr9 123719478 123719774 -18551670 - AluSx SINE Alu -16 296 1 582 264 37 34 chr9 123719823 123720050 -18551394 + L1ME4a LINE L1 5847 6077 -44 1963 168 7 0 chr9 123720050 123720353 -18551091 - AluJo SINE Alu -7 305 1 582 264 37 34 chr9 123720353 123720394 -18551050 + L1ME4a LINE L1 6077 6116 -5 2332 106 0 7 chr9 123720679 123720982 -18550462 - AluSx SINE Alu -11 301 1 290 249 133 0 chr9 123720987 123721096 -18550348 + MIR SINE MIR 45 146 -62 264 270 230 0 chr9 123721656 123721756 -18549688 + MER5B DNA MER1_type 20 142 -36 276 375 130 0 chr9 123722135 123722404 -18549040 + L2 LINE L2 2966 3269 -3 267 289 174 47 chr9 123723906 123724055 -18547389 - L3 LINE CR1 -2 1575 1408 294 260 230 0 chr9 123725370 123725470 -18545974 + MER5B DNA MER1_type 20 142 -36 2272 125 3 0 chr9 123725661 123725965 -18545479 - AluSq SINE Alu -7 306 2 5619 113 14 34 chr9 123725971 123726347 -18545097 - L1MC1 LINE L1 -1 6332 5950 1957 142 26 3 chr9 123726347 123726649 -18544795 - AluSx SINE Alu -3 309 1 5619 113 14 34 chr9 123726649 123727183 -18544261 - L1MC1 LINE L1 -383 5950 5440 226 127 0 36 chr9 123727306 123727361 -18544083 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 1062 206 0 0 chr9 123727368 123727548 -18543896 - AluJ SINE Alu 0 312 133 239 0 32 0 chr9 123727553 123727584 -18543860 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2353 94 0 0 chr9 123728050 123728347 -18543097 - AluSx SINE Alu -15 297 1 884 154 8 0 chr9 123728353 123728483 -18542961 - AluJ SINE Alu -181 131 1 428 284 78 14 chr9 123728545 123728686 -18542758 - MIR3 SINE MIR -24 184 35 206 297 109 0 chr9 123728904 123729005 -18542439 - MIR SINE MIR -121 141 30 692 237 0 0 chr9 123729073 123729208 -18542236 - MER5A DNA MER1_type -54 135 1 315 327 43 25 chr9 123729208 123729359 -18542085 - MIR3 SINE MIR -53 155 2 1637 186 25 4 chr9 123729899 123730178 -18541266 - AluJo SINE Alu -21 291 7 238 353 0 24 chr9 123730233 123730318 -18541126 - L2 LINE L2 -2 3270 3188 181 280 40 40 chr9 123730496 123730571 -18540873 - MIR SINE MIR -80 182 108 306 336 114 44 chr9 123731126 123731424 -18540020 + L2 LINE L2 2953 3271 -1 297 237 113 41 chr9 123731599 123731696 -18539748 - MIR3 SINE MIR -28 180 77 1037 272 87 52 chr9 123731780 123731862 -18539582 + L3 LINE CR1 931 1009 -568 2466 84 3 7 chr9 123731862 123732172 -18539272 + AluSg SINE Alu 1 309 -1 1037 272 87 52 chr9 123732172 123732607 -18538837 + L3 LINE CR1 1009 1466 -111 270 333 0 0 chr9 123734107 123734185 -18537259 + L2 LINE L2 3236 3313 0 373 267 0 0 chr9 123734467 123734557 -18536887 - MIR SINE MIR -110 152 63 440 158 60 45 chr9 123734610 123734639 -18536805 + L1ME1 LINE L1 5211 5238 -908 1795 147 115 3 chr9 123734639 123734952 -18536492 - MER7A DNA MER2_type 0 346 1 440 158 60 45 chr9 123734952 123735037 -18536407 + L1ME1 LINE L1 5238 5330 -816 1781 157 7 27 chr9 123735037 123735337 -18536107 + AluJo SINE Alu 1 294 -18 440 158 60 45 chr9 123735337 123735354 -18536090 + L1ME1 LINE L1 5330 5345 -801 2051 218 85 10 chr9 123735421 123735939 -18535505 + L1ME1 LINE L1 5602 6158 -8 986 210 15 24 chr9 123736777 123736982 -18534462 + MIR SINE MIR 9 211 -51 1625 167 175 0 chr9 123736983 123737348 -18534096 - MLT1D LTR MaLR -1 504 76 1783 163 94 3 chr9 123737348 123737698 -18533746 + MLT1B LTR MaLR 1 382 -8 462 165 13 0 chr9 123737706 123737785 -18533659 - MLT1D LTR MaLR -425 80 1 198 194 0 0 chr9 123737887 123737949 -18533495 + (CTA)n Simple_repeat Simple_repeat 1 62 0 253 298 29 39 chr9 123739139 123739243 -18532201 + L2 LINE L2 2964 3066 -206 351 245 94 57 chr9 123739361 123739520 -18531924 + MIR SINE MIR 8 146 -62 187 333 37 0 chr9 123739581 123739635 -18531809 + L3 LINE CR1 1077 1132 -445 309 319 9 53 chr9 123739739 123739852 -18531592 + L3 LINE CR1 1345 1452 -125 229 308 143 0 chr9 123741424 123741557 -18529887 - MIR3 SINE MIR -27 181 30 279 202 107 24 chr9 123742216 123742300 -18529144 - MER58B DNA MER1_type -1 340 250 1909 153 0 4 chr9 123742328 123742609 -18528835 - AluJb SINE Alu -15 297 18 189 323 141 0 chr9 123742721 123742820 -18528624 - MIR SINE MIR -81 181 69 497 171 117 9 chr9 123742858 123742969 -18528475 - MER58B DNA MER1_type -218 123 1 236 241 0 52 chr9 123743003 123743061 -18528383 + MIR SINE MIR 86 140 -68 959 227 82 25 chr9 123743390 123743707 -18527737 + MER46C DNA MER2_type 4 338 0 206 246 18 35 chr9 123743766 123743823 -18527621 - MIR3 SINE MIR -1 207 152 2363 107 0 16 chr9 123743885 123744202 -18527242 - AluSx SINE Alu 0 312 1 260 219 85 0 chr9 123744264 123744346 -18527098 - MIR SINE MIR -66 142 54 339 244 23 12 chr9 123744701 123744787 -18526657 + MIR SINE MIR 97 183 -79 190 316 132 29 chr9 123745034 123745170 -18526274 - MIR SINE MIR -44 218 69 229 204 20 0 chr9 123745291 123745340 -18526104 - MIR SINE MIR -74 134 85 242 315 117 18 chr9 123746122 123746233 -18525211 + MIR3 SINE MIR 82 203 -5 228 351 21 0 chr9 123746588 123746682 -18524762 - MIR SINE MIR -147 115 20 749 269 21 11 chr9 123746790 123746976 -18524468 + MIR SINE MIR 10 197 -65 761 216 68 34 chr9 123747545 123747721 -18523723 - MIR SINE MIR -39 223 42 22 0 0 0 chr9 123748405 123748427 -18523017 + GC_rich Low_complexity Low_complexity 1 22 0 2164 108 0 10 chr9 123749441 123749738 -18521706 - AluSq SINE Alu -19 294 1 186 292 15 31 chr9 123750022 123750087 -18521357 + L3 LINE CR1 1495 1558 -19 2489 60 0 0 chr9 123750139 123750464 -18520980 + AluY SINE Alu 1 311 0 265 180 40 0 chr9 123751942 123751992 -18519452 - L3 LINE CR1 -443 1134 1083 349 277 59 0 chr9 123752551 123752652 -18518792 + L2 LINE L2 3205 3311 -2 285 243 40 14 chr9 123753997 123754071 -18517373 - MIR3 SINE MIR -46 162 87 1629 157 43 36 chr9 123754427 123754707 -18516737 - AluJb SINE Alu -17 295 14 262 204 0 0 chr9 123755201 123755255 -18516189 - Charlie8 DNA MER1_type -2272 145 92 347 301 57 24 chr9 123755662 123755785 -18515659 + L2 LINE L2 3179 3305 -8 183 216 0 0 chr9 123756502 123756539 -18514905 - MIR SINE MIR -120 142 106 472 271 146 6 chr9 123756559 123756766 -18514678 - MIR SINE MIR -10 252 22 271 387 57 0 chr9 123757357 123757481 -18513963 + L2 LINE L2 2920 3050 -222 366 23 0 0 chr9 123757609 123757652 -18513792 + (TG)n Simple_repeat Simple_repeat 1 43 0 2233 126 0 0 chr9 123758037 123758330 -18513114 + AluSx SINE Alu 1 293 -19 575 147 0 55 chr9 123758517 123758626 -18512818 + L1MB2 LINE L1 6069 6171 0 319 288 122 22 chr9 123759306 123759445 -18511999 - L2 LINE L2 -18 3254 3102 237 254 14 0 chr9 123759825 123759896 -18511548 - L1ME LINE L1 -256 5865 5794 1004 263 163 58 chr9 123760037 123760148 -18511296 + L2 LINE L2 2269 2367 -946 1869 182 24 90 chr9 123760148 123760648 -18510796 - MLT1C LTR MaLR 0 467 1 1004 263 163 58 chr9 123760648 123761290 -18510154 + L2 LINE L2 2367 3150 -163 2125 141 3 0 chr9 123761290 123761588 -18509856 + AluSx SINE Alu 1 299 -13 1004 263 163 58 chr9 123761588 123761769 -18509675 + L2 LINE L2 3150 3311 -2 263 308 22 11 chr9 123761839 123761930 -18509514 - L1ME LINE L1 -482 5639 5548 210 229 0 21 chr9 123761988 123762036 -18509408 + G-rich Low_complexity Low_complexity 2 48 0 1954 119 71 9 chr9 123762663 123763000 -18508444 - MER46B DNA MER2_type -3 233 1 666 209 104 43 chr9 123763128 123763163 -18508281 - MER5A DNA MER1_type -6 183 152 2555 63 0 0 chr9 123763163 123763464 -18507980 - AluY SINE Alu -10 301 1 666 209 104 43 chr9 123763464 123763591 -18507853 - MER5A DNA MER1_type -37 152 11 208 284 64 55 chr9 123763827 123763936 -18507508 - MIR SINE MIR -70 192 83 292 295 86 0 chr9 123763994 123764099 -18507345 - MIR SINE MIR -82 180 67 252 0 0 0 chr9 123764568 123764596 -18506848 + (CA)n Simple_repeat Simple_repeat 2 29 0 432 309 96 17 chr9 123764743 123764921 -18506523 + MIR3 SINE MIR 11 202 -6 418 220 0 76 chr9 123765010 123765128 -18506316 - MIR SINE MIR -32 230 122 424 338 95 0 chr9 123765227 123765375 -18506069 - L3 LINE CR1 -85 1492 1331 414 347 53 15 chr9 123765379 123765568 -18505876 + MIR3 SINE MIR 13 208 0 1219 202 73 16 chr9 123765745 123766244 -18505200 + MER90 LTR ERV1 56 614 0 5250 219 128 46 chr9 123766278 123766607 -18504837 + L2 LINE L2 1169 1470 -1843 751 150 174 92 chr9 123766607 123766814 -18504630 + MER58A DNA MER1_type 1 224 0 5250 219 128 46 chr9 123766814 123767762 -18503682 + L2 LINE L2 1470 2339 -974 2474 147 36 10 chr9 123767762 123768177 -18503267 - MSTB LTR MaLR 0 426 1 5250 219 128 46 chr9 123768177 123768874 -18502570 + L2 LINE L2 2339 3306 -7 497 219 48 0 chr9 123769012 123769158 -18502286 + MER113 DNA MER1_type? 1 153 -368 2312 119 3 0 chr9 123769425 123769737 -18501707 + AluSp SINE Alu 1 313 0 450 256 131 56 chr9 123769803 123769963 -18501481 - MIR3 SINE MIR -2 206 35 435 299 19 0 chr9 123769978 123770085 -18501359 - L2 LINE L2 -10 3262 3154 309 281 68 98 chr9 123770849 123770949 -18500495 + MIR SINE MIR 15 107 -155 2268 123 3 0 chr9 123770949 123771259 -18500185 - AluSx SINE Alu -1 311 1 309 281 68 98 chr9 123771259 123771362 -18500082 + MIR SINE MIR 107 212 -50 2428 70 0 3 chr9 123772412 123772711 -18498733 - AluY SINE Alu -13 298 1 859 243 67 25 chr9 123773485 123773724 -18497720 + MIR SINE MIR 14 262 0 259 385 74 31 chr9 123773912 123774169 -18497275 + L2 LINE L2 2947 3214 -58 25 31 0 0 chr9 123774680 123774712 -18496732 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr9 123775176 123775204 -18496240 + AT_rich Low_complexity Low_complexity 1 28 0 619 122 0 0 chr9 123775286 123775376 -18496068 + FLAM SINE Alu 40 129 -14 1915 161 7 0 chr9 123775501 123775792 -18495652 + AluSx SINE Alu 1 293 -19 2074 190 31 0 chr9 123775795 123776242 -18495202 + L1 LINE L1 4377 4837 -1309 1861 125 37 10 chr9 123776242 123776532 -18494912 + L1PA15 LINE L1 5861 6165 0 410 295 48 0 chr9 123776627 123776732 -18494712 + L2 LINE L2 3182 3291 -22 186 103 0 0 chr9 123776737 123776766 -18494678 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 441 266 31 22 chr9 123778177 123778294 -18493150 + MIR SINE MIR 43 164 -85 1916 121 46 7 chr9 123778294 123778575 -18492869 - AluJb SINE Alu -20 292 1 441 266 31 22 chr9 123778575 123778594 -18492850 + MIR SINE MIR 164 181 -68 24 0 0 0 chr9 123778685 123778709 -18492735 + AT_rich Low_complexity Low_complexity 1 24 0 2051 116 0 11 chr9 123778720 123779048 -18492396 - AluSx SINE Alu 0 325 1 21 57 0 0 chr9 123779295 123779330 -18492114 + AT_rich Low_complexity Low_complexity 1 35 0 1543 99 40 5 chr9 123780045 123780267 -18491177 - MER30 DNA MER1_type 0 230 1 253 281 141 0 chr9 123781132 123781196 -18490248 - MIR3 SINE MIR -33 175 103 640 329 105 3 chr9 123781327 123781622 -18489822 + L3 LINE CR1 1165 1489 -88 297 325 13 0 chr9 123781621 123781698 -18489746 - L2 LINE L2 -2 3311 3234 * 258 268 46 6 chr9 123781895 123781975 -18489469 - MIR SINE MIR -57 151 86 2004 122 14 10 chr9 123782709 123783005 -18488439 + AluSp SINE Alu 1 297 -16 328 292 97 14 chr9 123783449 123783593 -18487851 - MIR3 SINE MIR -34 174 19 287 157 41 149 chr9 123783659 123783683 -18487761 + L1ME4a LINE L1 5968 5993 -128 1863 115 56 11 chr9 123783683 123783952 -18487492 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr9 123783956 123783980 -18487464 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 287 157 41 149 chr9 123783980 123784071 -18487373 + L1ME4a LINE L1 5996 6075 -46 189 0 0 0 chr9 123784174 123784195 -18487249 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 323 254 182 18 chr9 123784199 123784309 -18487135 + MIR3 SINE MIR 15 142 -66 245 313 52 74 chr9 123784351 123784581 -18486863 - L2 LINE L2 -853 2461 2237 1933 136 14 0 chr9 123784729 123785052 -18486392 + AluSx SINE Alu 1 327 0 262 318 87 8 chr9 123785837 123785963 -18485481 - MIR3 SINE MIR -7 201 66 279 268 148 35 chr9 123785986 123786128 -18485316 - L3 LINE CR1 -189 1388 1231 2320 107 0 0 chr9 123786465 123786765 -18484679 + AluSx SINE Alu 1 300 -12 554 294 31 6 chr9 123786782 123786942 -18484502 + MIR3 SINE MIR 30 193 -15 190 293 49 61 chr9 123787073 123787155 -18484289 + MIR3 SINE MIR 11 91 -117 2043 148 3 3 chr9 123787197 123787508 -18483936 - AluJo SINE Alu 0 312 2 2174 163 104 36 chr9 123787547 123788020 -18483424 + MLT1D LTR MaLR 1 505 0 267 114 23 0 chr9 123788066 123788110 -18483334 + MER5B DNA MER1_type 1 45 -133 * 269 264 0 42 chr9 123788104 123788176 -18483268 - MER5B DNA MER1_type -105 73 5 2454 101 0 0 chr9 123790377 123790685 -18480759 + AluSx SINE Alu 1 308 -4 256 208 13 13 chr9 123790778 123790855 -18480589 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 21 57 0 0 chr9 123790858 123790893 -18480551 + AT_rich Low_complexity Low_complexity 1 35 0 2096 105 3 3 chr9 123790930 123791224 -18480220 - AluSc SINE Alu -15 294 1 188 111 28 0 chr9 123792549 123792585 -18478859 + (TTTAA)n Simple_repeat Simple_repeat 4 40 0 310 196 11 54 chr9 123793006 123793098 -18478346 - Charlie8 DNA MER1_type -2246 171 84 2122 97 24 3 chr9 123793185 123793473 -18477971 + AluSq SINE Alu 2 295 -18 386 339 97 57 chr9 123793818 123794169 -18477275 + L2 LINE L2 2893 3257 -15 249 312 166 15 chr9 123794779 123794934 -18476510 + L2 LINE L2 3078 3273 -40 1611 204 63 26 chr9 123794934 123795316 -18476128 + MSTD LTR MaLR 1 396 0 249 312 166 15 chr9 123795316 123795365 -18476079 + L2 LINE L2 3273 3313 0 253 224 17 17 chr9 123795371 123795429 -18476015 + MIR3 SINE MIR 103 160 -48 466 276 138 13 chr9 123795920 123796072 -18475372 + MIR3 SINE MIR 21 191 -17 2414 107 6 6 chr9 123796578 123796934 -18474510 + MER46B DNA MER2_type 5 235 -1 1455 163 144 0 chr9 123796943 123797207 -18474237 - AluJo SINE Alu 0 302 1 337 353 27 7 chr9 123797253 123797400 -18474044 + MIR3 SINE MIR 3 151 -75 198 0 0 0 chr9 123797482 123797504 -18473940 + (TTA)n Simple_repeat Simple_repeat 1 22 0 194 222 0 0 chr9 123797934 123797979 -18473465 + MIR3 SINE MIR 161 205 -3 1477 224 52 61 chr9 123798262 123798359 -18473085 + L2 LINE L2 2690 2786 -527 438 351 54 0 chr9 123798359 123798544 -18472900 - MER91A DNA MER1_type -1 195 1 1477 224 52 61 chr9 123798544 123799086 -18472358 + L2 LINE L2 2786 3313 0 1612 177 35 3 chr9 123799093 123799381 -18472063 + AluJo SINE Alu 1 297 -15 207 69 0 0 chr9 123799388 123799417 -18472027 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2454 39 3 23 chr9 123800073 123800383 -18471061 - AluY SINE Alu -7 304 1 22 0 0 0 chr9 123800454 123800476 -18470968 + AT_rich Low_complexity Low_complexity 1 22 0 484 297 14 7 chr9 123801046 123801194 -18470250 + MIR3 SINE MIR 53 201 -7 2256 107 0 0 chr9 123801499 123801797 -18469647 - AluSg SINE Alu -12 298 1 308 351 33 20 chr9 123802651 123802802 -18468642 - L3 LINE CR1 -5 1572 1420 1123 167 61 5 chr9 123803102 123803300 -18468144 + AluJo SINE Alu 87 295 -17 404 231 53 96 chr9 123803458 123803666 -18467778 - L1MC4a LINE L1 -1887 5921 5723 23 54 0 0 chr9 123803676 123803713 -18467731 + AT_rich Low_complexity Low_complexity 1 37 0 2430 95 0 0 chr9 123804202 123804507 -18466937 - AluSx SINE Alu -5 307 3 623 280 42 36 chr9 123804864 123805210 -18466234 + L1ME3A LINE L1 5566 5836 -334 671 253 63 45 chr9 123805267 123805696 -18465748 + LTR35 LTR ERV1 138 556 0 23 33 0 0 chr9 123805712 123805742 -18465702 + AT_rich Low_complexity Low_complexity 1 30 0 805 173 0 0 chr9 123806261 123806394 -18465050 - FLAM_C SINE Alu 0 133 1 340 338 103 46 chr9 123806443 123806831 -18464613 - L2 LINE L2 -786 2528 2119 2371 76 17 0 chr9 123806850 123807152 -18464292 + AluSc SINE Alu 1 307 -2 2234 92 0 3 chr9 123807272 123807578 -18463866 - AluSc SINE Alu 0 305 1 2211 238 115 1 chr9 123807666 123808470 -18462974 - L2 LINE L2 -5 3308 2411 292 293 207 0 chr9 123809639 123809755 -18461689 + MIR3 SINE MIR 68 207 -1 1368 212 32 66 chr9 123809894 123810272 -18461172 + MLT1A1 LTR MaLR 1 365 0 669 267 43 43 chr9 123811303 123811535 -18459909 - MIR SINE MIR -17 245 14 273 308 112 0 chr9 123811553 123811660 -18459784 + L2 LINE L2 3178 3296 -17 488 241 133 0 chr9 123811841 123812007 -18459437 + MIR SINE MIR 73 260 -2 695 305 98 3 chr9 123812471 123812796 -18458648 + L1ME LINE L1 5313 5668 -496 2515 31 0 0 chr9 123812923 123813209 -18458235 - AluY SINE Alu -25 286 1 2047 129 0 26 chr9 123813788 123814097 -18457347 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr9 123815112 123815139 -18456305 + AT_rich Low_complexity Low_complexity 1 27 0 2309 107 7 0 chr9 123815308 123815606 -18455838 - AluSx SINE Alu -12 300 1 922 222 46 9 chr9 123816000 123816216 -18455228 - MIR SINE MIR -30 232 9 48 18 0 0 chr9 123816399 123816454 -18454990 + AT_rich Low_complexity Low_complexity 1 55 0 311 313 56 28 chr9 123816531 123816675 -18454769 + L2 LINE L2 3165 3312 -1 357 216 103 9 chr9 123816719 123816835 -18454609 + L1ME4a LINE L1 5978 6104 -17 391 214 14 25 chr9 123816839 123816966 -18454478 - L1MC3 LINE L1 -11 8026 7687 2265 90 0 0 chr9 123817296 123817574 -18453870 - AluSx SINE Alu -18 294 17 421 269 37 22 chr9 123818105 123818239 -18453205 + MIR SINE MIR 27 162 -100 367 268 27 9 chr9 123818546 123818658 -18452786 + L1M3 LINE L1 3904 4017 -2129 1135 242 153 27 chr9 123818777 123819294 -18452150 + L1ME LINE L1 140 721 -5349 295 200 0 95 chr9 123819299 123819394 -18452050 - Cheshire DNA MER1_type -1988 432 347 1245 108 0 0 chr9 123819394 123819560 -18451884 + AluSg/x SINE Alu 129 294 -16 276 262 16 0 chr9 123819595 123819656 -18451788 - Cheshire DNA MER1_type -2358 62 1 951 305 130 36 chr9 123819689 123820175 -18451269 + L1M3 LINE L1 4530 5102 -1044 1775 112 4 0 chr9 123820175 123820425 -18451019 - L1PA15 LINE L1 -16 6149 5899 951 305 130 36 chr9 123820425 123820630 -18450814 + L1M3 LINE L1 5102 5286 -860 679 194 116 0 chr9 123820632 123820787 -18450657 - MIR SINE MIR 0 262 90 360 239 26 0 chr9 123820857 123820970 -18450474 + L1M3 LINE L1 5353 5468 -700 407 321 11 27 chr9 123821008 123821195 -18450249 - L1ME3A LINE L1 -222 5948 5765 746 281 38 43 chr9 123821211 123821609 -18449835 + L1MC4a LINE L1 5506 5901 -1907 1083 134 0 0 chr9 123821612 123821830 -18449614 + (TA)n Simple_repeat Simple_repeat 1 218 0 2283 117 0 0 chr9 123822498 123822798 -18448646 + AluSg SINE Alu 1 300 -10 763 199 203 4 chr9 123822978 123823224 -18448220 + Charlie2a DNA MER1_type 1474 1768 -1094 1242 203 128 46 chr9 123823225 123823364 -18448080 + Charlie2a DNA MER1_type 2114 2240 -622 2304 65 0 3 chr9 123823364 123823656 -18447788 - AluY SINE Alu -20 291 1 1242 203 128 46 chr9 123823656 123823981 -18447463 + Charlie2a DNA MER1_type 2240 2537 -325 2017 142 3 0 chr9 123823981 123824270 -18447174 + AluSx SINE Alu 3 292 -20 1242 203 128 46 chr9 123824270 123824450 -18446994 + Charlie2a DNA MER1_type 2537 2802 -60 231 65 0 0 chr9 123824450 123824481 -18446963 + Alu SINE Alu 260 290 -10 1242 203 128 46 chr9 123824481 123824548 -18446896 + Charlie2a DNA MER1_type 2802 2862 0 672 352 107 34 chr9 123824548 123825108 -18446336 - L2 LINE L2 -1995 1319 719 803 159 7 28 chr9 123826049 123826194 -18445250 + FLAM_C SINE Alu 1 142 -1 21 36 0 0 chr9 123826260 123826288 -18445156 + AT_rich Low_complexity Low_complexity 1 28 0 390 292 50 8 chr9 123826871 123826991 -18444453 - L2 LINE L2 -22 3291 3167 217 333 163 14 chr9 123827052 123827193 -18444251 - L2 LINE L2 -5 3308 3147 28 0 0 0 chr9 123827717 123827745 -18443699 + AT_rich Low_complexity Low_complexity 1 28 0 2168 107 0 0 chr9 123828135 123828415 -18443029 + AluSx SINE Alu 1 280 -32 270 0 0 0 chr9 123828415 123828445 -18442999 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 746 271 66 4 chr9 123828736 123829009 -18442435 + L1MEc LINE L1 100 389 -6007 3045 174 21 11 chr9 123829069 123829604 -18441840 + L1MA2 LINE L1 13 552 -7013 * 7137 125 22 4 chr9 123829579 123831744 -18439700 + L1MA2 LINE L1 5520 7723 0 1208 99 0 0 chr9 123831851 123832023 -18439421 + AluSq SINE Alu 133 304 0 2064 170 9 0 chr9 123832135 123832464 -18438980 - MER7A DNA MER2_type -10 336 7 2285 101 3 0 chr9 123832525 123832823 -18438621 + AluSx SINE Alu 1 299 -13 205 333 176 30 chr9 123833018 123833183 -18438261 - MIR3 SINE MIR -2 206 18 607 336 65 69 chr9 123833594 123834070 -18437374 - L3 LINE CR1 -3 1574 1101 26 0 0 0 chr9 123834230 123834256 -18437188 + AT_rich Low_complexity Low_complexity 1 26 0 191 374 114 0 chr9 123835509 123835632 -18435812 - L2 LINE L2 -464 2850 2714 2233 124 0 0 chr9 123837458 123837765 -18433679 + AluSx SINE Alu 1 307 -5 2041 119 0 0 chr9 123837779 123838056 -18433388 + AluSx SINE Alu 1 277 -35 1066 98 0 13 chr9 123838062 123838288 -18433156 + (GGAA)n Simple_repeat Simple_repeat 1 222 0 576 221 142 44 chr9 123838301 123838505 -18432939 - MIR SINE MIR -10 252 29 468 278 21 7 chr9 123839179 123839323 -18432121 + MIR SINE MIR 35 180 -82 387 286 77 73 chr9 123840193 123840441 -18431003 + MIR SINE MIR 2 250 -12 1027 161 0 12 chr9 123841305 123841473 -18429971 - FAM SINE Alu -8 167 2 255 172 38 83 chr9 123841823 123841980 -18429464 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 29 28 0 0 chr9 123842192 123842228 -18429216 + AT_rich Low_complexity Low_complexity 1 36 0 236 290 15 30 chr9 123842284 123842415 -18429029 + GA-rich Low_complexity Low_complexity 2 130 0 224 296 31 19 chr9 123842338 123842500 -18428944 + (CAGAGA)n Simple_repeat Simple_repeat 2 165 0 * 208 167 0 24 chr9 123843095 123843137 -18428307 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1334 126 0 56 chr9 123843486 123843701 -18427743 + AluSg/x SINE Alu 74 276 -36 733 128 18 24 chr9 123843701 123843865 -18427579 + G-rich Low_complexity Low_complexity 4 166 0 270 0 0 0 chr9 123844907 123844937 -18426507 + (CA)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr9 123845497 123845520 -18425924 + AT_rich Low_complexity Low_complexity 1 23 0 230 310 56 0 chr9 123845563 123845634 -18425810 + L2 LINE L2 3158 3232 -40 1070 146 116 20 chr9 123845971 123846170 -18425274 - MER20 DNA MER1_type -1 218 1 379 317 92 54 chr9 123846215 123846537 -18424907 - L2 LINE L2 -195 3077 2733 242 215 46 31 chr9 123846535 123846600 -18424844 + MIR3 SINE MIR 123 188 -20 * 7319 43 5 0 chr9 123846877 123848340 -18423104 + L1PA6 LINE L1 4687 6154 0 903 252 85 3 chr9 123848789 123849015 -18422429 + MIR SINE MIR 3 232 -30 1031 214 193 48 chr9 123849073 123849550 -18421894 + MLT1H LTR MaLR 1 546 -3 200 94 31 0 chr9 123849843 123849875 -18421569 + A-rich Low_complexity Low_complexity 2 34 0 216 135 0 0 chr9 123850097 123850134 -18421310 + (CAT)n Simple_repeat Simple_repeat 2 38 0 405 234 54 9 chr9 123850349 123850460 -18420984 - L2 LINE L2 -665 2649 2534 22 88 0 0 chr9 123850758 123850815 -18420629 + AT_rich Low_complexity Low_complexity 1 57 0 255 360 18 27 chr9 123850842 123850953 -18420491 + MIR SINE MIR 30 139 -69 2399 91 0 0 chr9 123851271 123851579 -18419865 + AluSg1 SINE Alu 1 308 -1 2083 138 0 3 chr9 123852205 123852495 -18418949 + AluJb SINE Alu 1 289 -23 309 109 0 0 chr9 123852501 123852547 -18418897 + (TG)n Simple_repeat Simple_repeat 2 47 0 183 205 0 0 chr9 123852547 123852586 -18418858 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 609 338 145 16 chr9 123852659 123853094 -18418350 - L2 LINE L2 -2 3311 2821 446 146 12 0 chr9 123853338 123853420 -18418024 + CT-rich Low_complexity Low_complexity 2 84 0 2026 119 4 0 chr9 123853430 123853707 -18417737 - AluSq SINE Alu -35 278 1 225 0 0 0 chr9 123854682 123854707 -18416737 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1155 121 8 100 chr9 123855032 123855068 -18416376 + AluJo SINE Alu 93 131 -181 1755 147 0 45 chr9 123855068 123855360 -18416084 - AluJo SINE Alu -24 288 10 1155 121 8 100 chr9 123855360 123855562 -18415882 + AluJo SINE Alu 131 309 -3 2237 94 10 10 chr9 123856790 123857098 -18414346 - AluY SINE Alu -3 308 1 23 33 0 0 chr9 123857333 123857363 -18414081 + AT_rich Low_complexity Low_complexity 1 30 0 845 255 85 8 chr9 123858476 123858711 -18412733 + MIR SINE MIR 10 262 0 1964 141 7 0 chr9 123858844 123859143 -18412301 + AluSx SINE Alu 1 301 -11 562 282 73 86 chr9 123859150 123859177 -18412267 - L2 LINE L2 -1 3271 3245 1859 61 61 16 chr9 123859177 123859424 -18412020 - AluY SINE Alu -53 258 1 562 282 73 86 chr9 123859424 123859888 -18411556 - L2 LINE L2 -27 3245 2776 1083 265 23 4 chr9 123860087 123860344 -18411100 - MIR SINE MIR 0 262 1 2281 99 23 0 chr9 123860428 123860731 -18410713 - AluSx SINE Alu -2 310 1 2204 102 0 0 chr9 123860785 123861078 -18410366 - AluSg SINE Alu -5 305 13 2012 104 3 65 chr9 123863023 123863331 -18408113 - AluSx SINE Alu -19 293 5 2066 131 0 3 chr9 123863680 123863994 -18407450 + AluSx SINE Alu 1 312 0 908 179 6 6 chr9 123864208 123864376 -18407068 + MER3 DNA MER1_type 1 168 -41 1277 82 0 0 chr9 123864432 123864590 -18406854 - AluSg/x SINE Alu -7 305 148 21 57 0 0 chr9 123864799 123864834 -18406610 + AT_rich Low_complexity Low_complexity 1 35 0 180 359 39 0 chr9 123865003 123865081 -18406363 + L3 LINE CR1 1494 1574 -3 394 290 129 16 chr9 123866221 123866407 -18405037 + MIR SINE MIR 54 260 -2 421 274 150 13 chr9 123866574 123866727 -18404717 - MIR SINE MIR -17 245 72 27 0 0 0 chr9 123866880 123866907 -18404537 + AT_rich Low_complexity Low_complexity 1 27 0 531 284 82 89 chr9 123867351 123867608 -18403836 - MIR SINE MIR -1 261 7 2321 129 0 15 chr9 123867734 123868075 -18403369 + MER1B DNA MER1_type 2 337 0 902 261 114 27 chr9 123868283 123868616 -18402828 + L2 LINE L2 2952 3313 0 278 313 116 9 chr9 123868722 123868834 -18402610 + MIR SINE MIR 18 141 -67 399 306 52 0 chr9 123869004 123869138 -18402306 + MIR3 SINE MIR 41 181 -27 21 0 0 0 chr9 123870510 123870531 -18400913 + AT_rich Low_complexity Low_complexity 1 21 0 2136 123 0 3 chr9 123870611 123870911 -18400533 - AluSx SINE Alu -13 299 1 2200 100 17 0 chr9 123871662 123871961 -18399483 + AluSx SINE Alu 1 304 -8 1944 233 21 36 chr9 123872944 123873464 -18397980 + L1M1 LINE L1 16 527 -7038 1459 128 62 45 chr9 123873470 123873759 -18397685 + MER49 LTR ERV1 1 294 -629 * 3124 195 13 42 chr9 123873743 123873807 -18397637 + MER4D LTR ERV1 60 124 -779 2339 108 0 0 chr9 123873807 123874114 -18397330 + AluSq SINE Alu 3 309 -4 3124 195 13 42 chr9 123874114 123874800 -18396644 + MER4D LTR ERV1 124 886 -17 8995 178 27 78 chr9 123874813 123877304 -18394140 + L1M1 LINE L1 528 3587 -3978 282 330 95 0 chr9 123877630 123877809 -18393635 - MIR SINE MIR -1 261 66 2163 124 0 0 chr9 123877935 123878226 -18393218 - AluSx SINE Alu -21 291 1 2159 196 83 12 chr9 123879046 123879541 -18391903 + MLT1F LTR MaLR 1 530 -12 26 30 0 0 chr9 123880241 123880274 -18391170 + AT_rich Low_complexity Low_complexity 1 33 0 2232 114 0 0 chr9 123880393 123880691 -18390753 + AluSx SINE Alu 1 298 -14 455 174 26 61 chr9 123880723 123880838 -18390606 - MER45B DNA AcHobo -3 1037 927 1276 141 15 0 chr9 123880842 123881041 -18390403 + AluSg/x SINE Alu 89 290 -22 3991 204 48 35 chr9 123881041 123881965 -18389479 - MER45B DNA AcHobo -104 936 1 423 141 0 0 chr9 123882154 123882225 -18389219 + MLT1A1 LTR MaLR 1 71 -294 2507 212 30 63 chr9 123882225 123883101 -18388343 - L1M4c LINE L1 -4761 1623 777 241 333 0 0 chr9 123883568 123883673 -18387771 + T-rich Low_complexity Low_complexity 1 105 0 24 0 0 0 chr9 123884112 123884136 -18387308 + AT_rich Low_complexity Low_complexity 1 24 0 2011 112 3 34 chr9 123884268 123884563 -18386881 + AluSx SINE Alu 3 288 -24 180 0 0 0 chr9 123884948 123884968 -18386476 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1514 153 0 95 chr9 123884981 123885275 -18386169 - AluJo SINE Alu -46 266 1 21 57 0 0 chr9 123885284 123885319 -18386125 + AT_rich Low_complexity Low_complexity 1 35 0 2447 83 3 0 chr9 123885520 123885821 -18385623 + AluSg SINE Alu 1 302 -8 2241 106 0 31 chr9 123886050 123886370 -18385074 + AluSx SINE Alu 1 310 -2 7084 136 22 36 chr9 123886370 123886471 -18384973 + L1MA5A LINE L1 3889 3990 -2307 1722 207 0 7 chr9 123886471 123886766 -18384678 + AluJo SINE Alu 1 293 -19 2184 109 0 26 chr9 123886768 123887079 -18384365 + AluSc SINE Alu 1 303 -6 7084 136 22 36 chr9 123887079 123887100 -18384344 + L1MA5A LINE L1 3991 4011 -2286 1557 156 80 75 chr9 123887100 123887473 -18383971 + THE1C LTR MaLR 1 375 0 7084 136 22 36 chr9 123887473 123889016 -18382428 + L1MA5A LINE L1 4011 5516 -781 1690 154 46 7 chr9 123889016 123889301 -18382143 - AluJo SINE Alu -16 296 1 7084 136 22 36 chr9 123889301 123889563 -18381881 + L1MA5A LINE L1 5516 5780 -517 2180 110 17 0 chr9 123889563 123889855 -18381589 + AluSp SINE Alu 1 297 -16 327 235 0 61 chr9 123889870 123889968 -18381476 + L1MC4 LINE L1 6612 6703 -1339 2934 118 24 14 chr9 123890000 123890510 -18380934 + L1MA5A LINE L1 5783 6297 0 1799 171 3 34 chr9 123890515 123890837 -18380607 + AluSx SINE Alu 1 312 0 28 29 0 0 chr9 123890853 123890888 -18380556 + AT_rich Low_complexity Low_complexity 1 35 0 1943 176 0 0 chr9 123890890 123891191 -18380253 + AluJo SINE Alu 1 301 -11 2407 70 6 6 chr9 123892012 123892324 -18379120 + AluSx SINE Alu 1 312 0 307 75 1 166 chr9 123892471 123892546 -18378898 + L1M2 LINE L1 5652 5715 -582 370 265 12 74 chr9 123892689 123892851 -18378593 + L2 LINE L2 2847 2998 -274 302 202 4 183 chr9 123892904 123892999 -18378445 - MIR SINE MIR -3 259 224 2420 73 10 0 chr9 123892999 123893301 -18378143 - AluSx SINE Alu -7 305 1 302 202 4 183 chr9 123893301 123893423 -18378021 - MIR SINE MIR -38 224 82 306 363 36 24 chr9 123893445 123893693 -18377751 - L2 LINE L2 -2302 1012 762 185 297 125 0 chr9 123893724 123893788 -18377656 + L2 LINE L2 3198 3269 -3 298 245 29 122 chr9 123895049 123895188 -18376256 + MIR SINE MIR 11 136 -126 954 253 60 12 chr9 123895191 123895440 -18376004 - MIR SINE MIR 0 262 2 291 223 129 29 chr9 123895559 123895698 -18375746 - L2 LINE L2 -77 3236 3084 1932 155 3 7 chr9 123897150 123897447 -18373997 + AluJb SINE Alu 1 296 -16 2066 124 24 3 chr9 123897619 123897910 -18373534 + AluSx SINE Alu 1 297 -15 2985 169 32 9 chr9 123897976 123898608 -18372836 - MER21B LTR ERV1 -82 781 84 871 161 0 0 chr9 123898873 123899003 -18372441 + FLAM_C SINE Alu 1 130 -3 545 132 0 0 chr9 123899010 123899101 -18372343 - Tigger4(Zombi) DNA MER2_type 0 2731 146 25 31 0 0 chr9 123899102 123899134 -18372310 + AT_rich Low_complexity Low_complexity 1 32 0 985 171 0 0 chr9 123899348 123899506 -18371938 - AluSg/x SINE Alu -9 301 144 401 314 147 26 chr9 123899575 123899766 -18371678 + MIR SINE MIR 5 218 -44 792 233 6 0 chr9 123899785 123899948 -18371496 - FAM SINE Alu -11 164 1 203 311 0 0 chr9 123899956 123900001 -18371443 + MIR SINE MIR 216 260 -2 446 259 124 5 chr9 123900027 123900212 -18371232 - MARNA DNA Mariner -227 359 153 2036 158 8 23 chr9 123900269 123900673 -18370771 - MER39 LTR ERV1 0 707 185 4016 190 34 20 chr9 123900787 123901563 -18369881 - MER21B LTR ERV1 -51 812 48 1331 227 112 8 chr9 123901563 123901955 -18369489 - MER57B LTR ERV1 -1 433 1 6677 124 70 10 chr9 123901957 123902177 -18369267 - Tigger3b DNA MER2_type -1797 1231 1026 2428 85 0 0 chr9 123902177 123902482 -18368962 + AluSg SINE Alu 1 305 -5 6677 124 70 10 chr9 123902482 123903423 -18368021 - Tigger3b DNA MER2_type -2002 1026 1 4016 190 34 20 chr9 123903423 123903444 -18368000 - MER21B LTR ERV1 -815 48 1 21 36 0 0 chr9 123903561 123903589 -18367855 + AT_rich Low_complexity Low_complexity 1 28 0 217 250 71 0 chr9 123903905 123903961 -18367483 - L2 LINE L2 0 3313 3254 2278 101 0 0 chr9 123904034 123904331 -18367113 - AluY SINE Alu -14 297 1 1081 224 55 13 chr9 123904596 123904904 -18366540 + L1ME3A LINE L1 5844 6164 -6 247 326 81 35 chr9 123905451 123905623 -18365821 - L2 LINE L2 -636 2678 2499 1474 293 106 43 chr9 123905651 123906121 -18365323 - L2 LINE L2 0 3272 2833 2195 107 0 38 chr9 123906121 123906438 -18365006 - AluSx SINE Alu -5 307 3 1474 293 106 43 chr9 123906438 123906892 -18364552 - L2 LINE L2 -439 2833 2409 2200 109 0 13 chr9 123906892 123907194 -18364250 + AluSq SINE Alu 1 298 -15 1474 293 106 43 chr9 123907194 123907462 -18363982 - L2 LINE L2 -863 2409 1948 234 135 0 0 chr9 123908539 123908576 -18362868 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 420 325 141 5 chr9 123909224 123909430 -18362014 + MIR SINE MIR 10 243 -19 336 173 94 16 chr9 123909460 123909587 -18361857 + (CATTA)n Simple_repeat Simple_repeat 1 137 0 1199 189 9 26 chr9 123910099 123910294 -18361150 + MER58A DNA MER1_type 2 194 -2226 2252 102 60 26 chr9 123910294 123910646 -18360798 - THE1B LTR MaLR 0 364 1 1199 189 9 26 chr9 123910646 123910677 -18360767 + MER58A DNA MER1_type 194 224 0 2177 75 0 4 chr9 123911048 123911313 -18360131 + AluSq SINE Alu 1 264 -49 323 98 0 0 chr9 123911374 123911425 -18360019 - Alu SINE Alu 0 302 252 222 105 0 0 chr9 123911552 123911590 -18359854 + (TA)n Simple_repeat Simple_repeat 2 39 0 936 55 19 28 chr9 123911873 123912235 -18359209 + (TA)n Simple_repeat Simple_repeat 1 359 0 2058 104 17 7 chr9 123912235 123912524 -18358920 - AluSc SINE Alu -17 292 1 530 271 86 0 chr9 123912524 123912664 -18358780 + L2 LINE L2 3162 3313 0 1277 143 58 5 chr9 123912723 123912947 -18358497 + MER46A DNA MER2_type 1 236 0 330 283 71 26 chr9 123913095 123913208 -18358236 + L2 LINE L2 3194 3311 -2 1385 102 5 5 chr9 123913329 123913525 -18357919 + AluSc SINE Alu 84 279 -30 1644 192 47 26 chr9 123913583 123913969 -18357475 - MSTD LTR MaLR -2 394 1 21 71 0 0 chr9 123916017 123916059 -18355385 + AT_rich Low_complexity Low_complexity 1 42 0 218 253 34 130 chr9 123916192 123916338 -18355106 - MIR SINE MIR -47 215 84 22 56 0 0 chr9 123916609 123916645 -18354799 + AT_rich Low_complexity Low_complexity 1 36 0 197 267 133 75 chr9 123916739 123916859 -18354585 + MIR SINE MIR 86 212 -50 586 303 61 26 chr9 123917424 123917652 -18353792 + MIR SINE MIR 8 243 -19 25 0 0 0 chr9 123917995 123918020 -18353424 + AT_rich Low_complexity Low_complexity 1 25 0 541 320 180 6 chr9 123918119 123918441 -18353003 - L2 LINE L2 -8 3264 2887 34358 62 16 3 chr9 123918444 123923951 -18347493 + L1PA6 LINE L1 600 6154 0 2268 92 3 29 chr9 123924112 123924427 -18347017 - AluSp SINE Alu -6 307 1 207 333 29 0 chr9 123924477 123924546 -18346898 - L2 LINE L2 -639 2675 2605 335 222 99 0 chr9 123924550 123924631 -18346813 + 5S rRNA rRNA 1 89 -32 1255 278 191 52 chr9 123924631 123925474 -18345970 - L2 LINE L2 -700 2614 1564 2147 134 3 0 chr9 123925474 123925773 -18345671 + AluSx SINE Alu 1 300 -12 1255 278 191 52 chr9 123925773 123926093 -18345351 - L2 LINE L2 -1750 1564 1290 276 119 0 0 chr9 123926127 123926169 -18345275 + MER116 DNA Mariner 39 80 0 298 357 69 78 chr9 123926361 123926857 -18344587 - L2 LINE L2 -50 3222 2733 423 300 120 0 chr9 123927468 123927618 -18343826 + L3 LINE CR1 829 996 -581 803 193 0 0 chr9 123928070 123928210 -18343234 + FLAM_C SINE Alu 2 141 -2 1824 148 45 9 chr9 123928436 123928768 -18342676 + MER2 DNA MER2_type 1 344 0 529 287 100 41 chr9 123928849 123929340 -18342104 - L1MC4a LINE L1 -1969 5839 5320 361 200 77 39 chr9 123929607 123929737 -18341707 + MIR SINE MIR 72 206 -56 265 196 20 0 chr9 123930286 123930337 -18341107 - L2 LINE L2 0 3313 3262 589 281 110 11 chr9 123930603 123930828 -18340616 + MIR SINE MIR 3 261 -1 380 344 53 32 chr9 123931060 123931249 -18340195 + MIR3 SINE MIR 5 197 -11 21 57 0 0 chr9 123931687 123931722 -18339722 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr9 123932485 123932519 -18338925 + AT_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr9 123933143 123933181 -18338263 + AT_rich Low_complexity Low_complexity 1 38 0 658 281 84 42 chr9 123935345 123935704 -18335740 - L2 LINE L2 -20 3293 2920 29 0 0 0 chr9 123935782 123935811 -18335633 + AT_rich Low_complexity Low_complexity 1 29 0 1151 169 5 11 chr9 123935819 123936008 -18335436 - AluJo SINE Alu -92 220 33 657 316 55 36 chr9 123936010 123936339 -18335105 - L2 LINE L2 -517 2797 2463 716 255 35 56 chr9 123936949 123937115 -18334329 + MIR SINE MIR 37 198 -64 2507 64 0 0 chr9 123937115 123937410 -18334034 + AluY SINE Alu 1 295 -16 716 255 35 56 chr9 123937410 123937474 -18333970 + MIR SINE MIR 198 262 0 238 177 16 16 chr9 123938079 123938090 -18333354 + (TA)n Simple_repeat Simple_repeat 2 12 -51 2217 134 6 6 chr9 123938090 123938434 -18333010 - MER2 DNA MER2_type 0 344 1 238 177 16 16 chr9 123938434 123938484 -18332960 + (TA)n Simple_repeat Simple_repeat 11 63 0 239 218 0 0 chr9 123938484 123938539 -18332905 + L1MC4 LINE L1 6649 6703 -1339 2156 104 37 0 chr9 123938713 123939011 -18332433 - AluSc SINE Alu 0 309 1 1556 101 0 0 chr9 123939012 123939211 -18332233 - AluSg SINE Alu -111 199 1 188 227 144 62 chr9 123939856 123939953 -18331491 + L2 LINE L2 3148 3252 -61 21 0 0 0 chr9 123940277 123940298 -18331146 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 123940509 123940530 -18330914 + AT_rich Low_complexity Low_complexity 1 21 0 195 283 67 0 chr9 123940602 123940662 -18330782 - MIR SINE MIR -1 261 198 270 254 15 0 chr9 123942088 123942155 -18329289 + MIR3 SINE MIR 96 163 -45 260 267 43 19 chr9 123942508 123942669 -18328775 - L1ME4a LINE L1 -4 6117 5953 1847 113 0 63 chr9 123942715 123943040 -18328404 + AluSx SINE Alu 1 306 0 430 250 115 32 chr9 123943082 123943238 -18328206 + MIR SINE MIR 72 240 -22 226 226 12 107 chr9 123944039 123944073 -18327371 + MIR SINE MIR 171 207 -55 1913 145 0 23 chr9 123944073 123944377 -18327067 + AluJb SINE Alu 1 297 -15 226 226 12 107 chr9 123944377 123944426 -18327018 + MIR SINE MIR 207 246 -16 21 36 0 0 chr9 123944559 123944587 -18326857 + AT_rich Low_complexity Low_complexity 1 28 0 2229 87 28 0 chr9 123944588 123944876 -18326568 - AluY SINE Alu -15 296 1 22 0 0 0 chr9 123945917 123945939 -18325505 + AT_rich Low_complexity Low_complexity 1 22 0 804 276 67 39 chr9 123946145 123946227 -18325217 - L1ME3A LINE L1 -302 5868 5790 2254 93 7 0 chr9 123946227 123946537 -18324907 - AluSp SINE Alu -1 312 1 804 276 67 39 chr9 123946537 123946918 -18324526 - L1ME3A LINE L1 -380 5790 5474 498 206 25 0 chr9 123946920 123947040 -18324404 - L1MD3 LINE L1 -4 8038 7904 36274 78 12 9 chr9 123947074 123953201 -18318243 - L1PA6 LINE L1 -1 6153 11 779 168 0 0 chr9 123953228 123953371 -18318073 - L1MC4 LINE L1 -132 7910 7768 314 333 169 5 chr9 123953432 123953639 -18317805 - L1MC4 LINE L1 0 8042 7802 245 185 0 46 chr9 123953639 123953704 -18317740 - L1MC5 LINE L1 -271 7690 7629 2146 103 3 27 chr9 123953711 123954012 -18317432 - AluSc SINE Alu -15 294 1 306 281 12 0 chr9 123954107 123954189 -18317255 - L1MC5 LINE L1 -520 7441 7359 313 310 9 9 chr9 123954278 123954394 -18317050 - L1M4 LINE L1 -810 5336 5221 423 358 48 6 chr9 123954685 123954909 -18316535 + MIR SINE MIR 10 245 -17 297 208 174 65 chr9 123955502 123955712 -18315732 + MIR SINE MIR 1 259 -3 2106 106 7 7 chr9 123955736 123956028 -18315416 - AluSx SINE Alu -20 292 1 360 304 123 74 chr9 123956132 123956563 -18314881 - L2 LINE L2 -8 3264 2813 241 287 148 33 chr9 123956770 123956892 -18314552 + L2 LINE L2 3136 3271 -1 32 0 0 0 chr9 123957136 123957168 -18314276 + AT_rich Low_complexity Low_complexity 1 32 0 535 261 43 58 chr9 123957447 123957635 -18313809 - MER5A DNA MER1_type -3 186 2 292 253 51 0 chr9 123957663 123957742 -18313702 - MER5B DNA MER1_type -26 152 70 294 233 117 15 chr9 123959074 123959280 -18312164 - L1MC5 LINE L1 -35 7926 7700 1045 311 137 20 chr9 123962043 123962642 -18308802 + L2 LINE L2 740 1408 -1906 603 310 139 16 chr9 123962654 123962970 -18308474 + L2 LINE L2 2507 2861 -453 382 229 208 0 chr9 123963167 123963263 -18308181 - L2 LINE L2 -2 3311 3196 2066 124 0 7 chr9 123965030 123965329 -18306115 + AluSx SINE Alu 1 297 -15 259 353 59 20 chr9 123966011 123966113 -18305331 - L2 LINE L2 -9 3304 3199 2145 117 0 10 chr9 123966415 123966723 -18304721 - AluSx SINE Alu -7 305 1 250 252 26 113 chr9 123968428 123968579 -18302865 + L2 LINE L2 2944 3081 -191 307 240 160 0 chr9 123968682 123968782 -18302662 + MIR SINE MIR 36 151 -111 2343 88 0 16 chr9 123968810 123969115 -18302329 - AluSx SINE Alu -3 309 10 512 208 117 0 chr9 123970072 123970192 -18301252 + FLAM_A SINE Alu 8 141 -1 243 333 29 0 chr9 123970326 123970431 -18301013 + (TATATG)n Simple_repeat Simple_repeat 4 111 0 401 279 89 6 chr9 123970551 123970709 -18300735 - L1ME4a LINE L1 -174 5947 5777 2278 106 3 3 chr9 123970796 123971108 -18300336 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 123972112 123972135 -18299309 + AT_rich Low_complexity Low_complexity 1 23 0 708 192 158 0 chr9 123972163 123972340 -18299104 + MER3 DNA MER1_type 5 209 0 196 378 89 34 chr9 123972365 123972656 -18298788 + L2 LINE L2 2375 2681 -633 286 330 184 36 chr9 123972742 123973106 -18298338 + L2 LINE L2 2851 3268 -4 378 254 73 42 chr9 123973439 123973604 -18297840 - L1ME4a LINE L1 -1 6120 5951 367 338 58 34 chr9 123974420 123974627 -18296817 + MIR SINE MIR 19 230 -32 1031 69 0 0 chr9 123974800 123974930 -18296514 - AluSg SINE Alu -13 299 170 804 100 27 0 chr9 123974930 123975040 -18296404 - AluSg SINE Alu -197 113 1 218 319 188 0 chr9 123975098 123975242 -18296202 - MIR SINE MIR -14 248 78 23 68 0 0 chr9 123975523 123975567 -18295877 + AT_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr9 123977912 123977948 -18293496 + AT_rich Low_complexity Low_complexity 1 36 0 297 338 51 13 chr9 123978611 123978768 -18292676 + L2 LINE L2 2886 3048 -224 1903 116 0 4 chr9 123978769 123979019 -18292425 + AluSc SINE Alu 1 249 -60 714 89 10 0 chr9 123979019 123979120 -18292324 + AluSc SINE Alu 198 299 -10 1625 199 7 3 chr9 123980115 123980397 -18291047 + AluJo SINE Alu 1 283 -29 439 186 69 62 chr9 123980596 123980741 -18290703 + L1ME4a LINE L1 5975 6120 -1 22 56 0 0 chr9 123980811 123980847 -18290597 + AT_rich Low_complexity Low_complexity 1 36 0 677 237 0 0 chr9 123980933 123981064 -18290380 - FLAM_A SINE Alu -2 131 1 24 0 0 0 chr9 123981115 123981139 -18290305 + AT_rich Low_complexity Low_complexity 1 24 0 2689 188 37 72 chr9 123981927 123982475 -18288969 + L1ME1 LINE L1 4497 5063 -1103 1497 176 73 0 chr9 123982475 123982747 -18288697 + AluJb SINE Alu 1 292 -20 2689 188 37 72 chr9 123982747 123983283 -18288161 + L1ME1 LINE L1 5063 5493 -673 2430 77 0 0 chr9 123983283 123983581 -18287863 - AluY SINE Alu -13 298 1 2689 188 37 72 chr9 123983581 123983996 -18287448 + L1ME1 LINE L1 5493 5921 -245 614 106 190 21 chr9 123984600 123984742 -18286702 + L1MB8 LINE L1 6013 6178 0 225 253 58 0 chr9 123984782 123984869 -18286575 - L1ME4a LINE L1 -67 6054 5963 444 210 28 119 chr9 123985033 123985176 -18286268 - MIR SINE MIR -70 192 63 303 232 105 0 chr9 123985193 123985288 -18286156 - L1ME4a LINE L1 -536 5585 5481 2438 75 3 0 chr9 123986158 123986452 -18284992 + AluSp SINE Alu 2 296 -17 1916 110 15 4 chr9 123986472 123986736 -18284708 + AluSx SINE Alu 28 294 -18 2089 125 3 0 chr9 123989574 123989861 -18281583 - AluSx SINE Alu -24 288 1 2229 117 3 0 chr9 123989870 123990170 -18281274 - AluSg SINE Alu -9 301 1 312 222 56 22 chr9 123990521 123990611 -18280833 - MIR SINE MIR -73 189 97 241 188 188 12 chr9 123990691 123990776 -18280668 - MIR SINE MIR -112 150 51 1988 160 0 0 chr9 123991776 123992082 -18279362 + AluJb SINE Alu 1 306 -6 283 290 148 18 chr9 123992221 123992390 -18279054 - MIR SINE MIR -41 221 31 227 333 75 32 chr9 123993492 123993678 -18277766 - L2 LINE L2 -908 2406 2213 975 160 77 0 chr9 123993759 123993953 -18277491 - MER3 DNA MER1_type 0 209 1 1870 154 0 7 chr9 123994687 123994986 -18276458 - AluJo SINE Alu -15 297 1 293 279 224 11 chr9 123995507 123995686 -18275758 - MIR SINE MIR -12 250 34 241 289 53 0 chr9 123995753 123995829 -18275615 - MIR SINE MIR -89 119 40 357 65 0 0 chr9 123996212 123996258 -18275186 - U2 snRNA snRNA -136 52 7 2488 88 0 0 chr9 124001156 124001463 -18269981 - AluSc SINE Alu -2 307 1 896 218 19 23 chr9 124003014 124003230 -18268214 - MER58C DNA MER1_type 0 215 1 399 294 18 18 chr9 124003421 124003530 -18267914 - MIR3 SINE MIR -53 155 47 2316 218 39 36 chr9 124004646 124005316 -18266128 - L1MD2 LINE L1 -17 6342 5671 309 305 124 88 chr9 124005502 124005866 -18265578 + L2 LINE L2 2879 3255 -17 473 221 26 0 chr9 124005959 124006072 -18265372 - L1MD1 LINE L1 -8 6234 6119 26 64 0 0 chr9 124006470 124006517 -18264927 + AT_rich Low_complexity Low_complexity 1 47 0 210 271 0 0 chr9 124007264 124007312 -18264132 - MIR3 SINE MIR -51 157 110 40 59 0 0 chr9 124007875 124007943 -18263501 + AT_rich Low_complexity Low_complexity 1 68 0 1848 187 55 23 chr9 124008199 124008638 -18262806 - L1MB7 LINE L1 -1 6183 5731 407 229 16 49 chr9 124009017 124009139 -18262305 + MER103 DNA DNA 2 119 -47 21 0 0 0 chr9 124009669 124009690 -18261754 + AT_rich Low_complexity Low_complexity 1 21 0 1069 201 37 5 chr9 124010343 124010557 -18260887 - MER58A DNA MER1_type -2 222 2 888 185 0 19 chr9 124010768 124010925 -18260519 - FRAM SINE Alu -25 151 1 25 31 0 0 chr9 124011331 124011363 -18260081 + AT_rich Low_complexity Low_complexity 1 32 0 327 25 0 0 chr9 124013508 124013548 -18257896 + (CA)n Simple_repeat Simple_repeat 1 40 0 551 140 0 70 chr9 124013559 124013659 -18257785 - AluJ/FLAM SINE Alu -219 93 1 762 214 121 13 chr9 124015825 124016049 -18255395 - MIR SINE MIR -13 249 2 533 310 61 10 chr9 124016284 124016481 -18254963 - MIR SINE MIR -36 226 20 432 265 164 62 chr9 124017006 124017435 -18254009 + L1MC4a LINE L1 5450 5924 -197 216 0 0 0 chr9 124017438 124017462 -18253982 + (CA)n Simple_repeat Simple_repeat 2 25 0 395 287 0 30 chr9 124018091 124018192 -18253252 - L2 LINE L2 -17 3296 3199 445 228 124 14 chr9 124018606 124018751 -18252693 + L1MC5 LINE L1 7749 7909 -52 315 258 166 8 chr9 124019142 124019328 -18252116 - MIR3 SINE MIR -1 261 3 303 190 69 0 chr9 124019334 124019392 -18252052 - L2 LINE L2 -2 3311 3250 852 197 87 14 chr9 124019394 124019602 -18251842 - MIR SINE MIR -26 236 14 196 341 83 23 chr9 124019833 124019965 -18251479 + MIR SINE MIR 45 184 -78 273 289 75 16 chr9 124020184 124020317 -18251127 + MIR SINE MIR 102 244 -18 23 0 0 0 chr9 124020476 124020499 -18250945 + GC_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 124020931 124020968 -18250476 + GC_rich Low_complexity Low_complexity 1 37 0 200 250 16 47 chr9 124021655 124021719 -18249725 - MIR SINE MIR -12 250 189 357 241 0 0 chr9 124021804 124021883 -18249561 - MIR SINE MIR -115 147 69 860 121 27 194 chr9 124022035 124022262 -18249182 + ORSL DNA AcHobo 1 264 -11 2535 27 7 3 chr9 124022262 124022558 -18248886 + AluY SINE Alu 1 297 -14 860 121 27 194 chr9 124022558 124022574 -18248870 + ORSL DNA AcHobo 264 179 -96 1726 124 79 21 chr9 124022574 124022865 -18248579 + 7SLRNA srpRNA srpRNA 4 311 -9 860 121 27 194 chr9 124022865 124022950 -18248494 + ORSL DNA AcHobo 178 275 0 429 310 123 6 chr9 124023086 124023257 -18248187 + MIR SINE MIR 47 237 -25 560 256 22 0 chr9 124023523 124023660 -18247784 - MIR SINE MIR -4 258 119 299 274 33 39 chr9 124023878 124024031 -18247413 + HsTC2 DNA Tc2 490 641 -1257 897 242 13 21 chr9 124024033 124024344 -18247100 + L1MC4a LINE L1 5641 5945 -1863 622 178 124 0 chr9 124026166 124026319 -18245125 - AluSg/x SINE Alu 0 306 138 2002 189 54 12 chr9 124026599 124027023 -18244421 - LTR40b LTR ERVL -20 442 1 1668 190 41 0 chr9 124027173 124027341 -18244103 - AluJb SINE Alu -5 307 120 333 0 0 0 chr9 124027341 124027378 -18244066 + (TG)n Simple_repeat Simple_repeat 2 38 0 1668 190 41 0 chr9 124027378 124027504 -18243940 - AluJb SINE Alu -192 120 1 279 278 68 80 chr9 124027504 124027666 -18243778 + MIR SINE MIR 96 255 -7 1213 253 159 34 chr9 124027789 124028236 -18243208 - MLT1J LTR MaLR -8 503 1 579 293 35 25 chr9 124028954 124029152 -18242292 + MIR SINE MIR 49 248 -14 1132 260 19 66 chr9 124029500 124029859 -18241585 - MLT1I LTR MaLR 0 409 96 218 194 194 0 chr9 124029957 124030019 -18241425 + MIR SINE MIR 75 148 -114 297 267 116 0 chr9 124030230 124030316 -18241128 - MIR SINE MIR -36 226 131 2331 126 46 46 chr9 124030316 124030769 -18240675 + L1MB3 LINE L1 5730 6182 -1 406 297 90 13 chr9 124030971 124031126 -18240318 + MIR3 SINE MIR 1 167 -41 629 247 67 0 chr9 124031675 124031825 -18239619 + MIR SINE MIR 47 206 -56 2067 112 0 16 chr9 124032063 124032366 -18239078 - AluSx SINE Alu -14 298 1 192 290 101 14 chr9 124032971 124033040 -18238404 + MIR SINE MIR 28 102 -160 367 284 0 0 chr9 124033093 124033188 -18238256 - MIR3 SINE MIR 0 208 114 476 249 124 73 chr9 124033349 124033582 -18237862 + MIR SINE MIR 18 262 0 498 212 12 24 chr9 124033582 124033752 -18237692 + CT-rich Low_complexity Low_complexity 1 168 0 329 313 100 20 chr9 124033801 124033951 -18237493 + MIR SINE MIR 97 258 -4 1899 178 35 66 chr9 124034315 124034797 -18236647 - MLT1C LTR MaLR 0 467 1 2196 105 3 0 chr9 124034830 124035124 -18236320 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr9 124035414 124035435 -18236009 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1479 124 44 0 chr9 124035440 124035665 -18235779 - AluSx SINE Alu -77 235 1 250 235 0 44 chr9 124035697 124035765 -18235679 + L2 LINE L2 2687 2751 -563 215 313 57 123 chr9 124035970 124036181 -18235263 + L2 LINE L2 3000 3196 -76 1321 174 44 71 chr9 124036182 124036495 -18234949 - MLT1B LTR MaLR 0 390 70 2077 103 0 26 chr9 124036495 124036797 -18234647 + AluSg SINE Alu 1 294 -16 1258 92 0 0 chr9 124036797 124036970 -18234474 - L1PA13 LINE L1 -10 6153 5981 1321 174 44 71 chr9 124036970 124037153 -18234291 - MLT1B LTR MaLR -318 72 1 42 20 0 0 chr9 124037161 124037210 -18234234 + AT_rich Low_complexity Low_complexity 1 49 0 351 0 0 0 chr9 124037215 124037254 -18234190 + (TTA)n Simple_repeat Simple_repeat 3 41 0 681 263 114 59 chr9 124037610 124037769 -18233675 - MER65A LTR ERV1 0 445 296 1829 164 0 0 chr9 124037769 124038067 -18233377 + AluSx SINE Alu 1 298 -14 681 263 114 59 chr9 124038067 124038329 -18233115 - MER65A LTR ERV1 -149 296 1 198 315 37 0 chr9 124038330 124038384 -18233060 + MIR SINE MIR 117 172 -90 806 122 15 23 chr9 124038676 124038807 -18232637 - FLAM_C SINE Alu -7 136 7 3325 138 2 25 chr9 124038936 124039285 -18232159 + MER41E LTR ERV1 3 338 -174 2426 73 0 6 chr9 124039285 124039599 -18231845 - AluSp SINE Alu -1 312 1 3325 138 2 25 chr9 124039599 124039770 -18231674 + MER41E LTR ERV1 338 511 -1 416 272 0 0 chr9 124039858 124039972 -18231472 - MIR SINE MIR -89 173 60 1210 218 148 14 chr9 124039982 124040408 -18231036 - MER113 DNA MER1_type? -1 520 38 454 315 73 6 chr9 124040986 124041151 -18230293 + MIR3 SINE MIR 21 196 -12 323 273 88 69 chr9 124041510 124041726 -18229718 - L1ME4a LINE L1 -1 6120 5901 646 189 59 105 chr9 124041729 124042035 -18229409 - LTR37A LTR ERV1 -9 417 126 4147 146 31 17 chr9 124042075 124042776 -18228668 - MER50 LTR ERV1 -23 711 1 384 205 33 66 chr9 124042776 124042896 -18228548 - LTR37A LTR ERV1 -292 134 19 238 191 22 162 chr9 124042949 124043085 -18228359 - MIR SINE MIR 0 262 146 1885 140 3 0 chr9 124043090 124043375 -18228069 - AluSx SINE Alu -26 286 1 339 260 0 21 chr9 124043407 124043503 -18227941 - L1ME4a LINE L1 -2293 5515 5422 2249 62 0 10 chr9 124043507 124043815 -18227629 - AluY SINE Alu 0 305 1 226 380 15 51 chr9 124043873 124044010 -18227434 - MIR3 SINE MIR -41 167 36 192 77 0 0 chr9 124044158 124044184 -18227260 + (A)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr9 124044225 124044248 -18227196 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1749 155 3 3 chr9 124044251 124044535 -18226909 - AluJo SINE Alu -28 284 1 310 332 44 76 chr9 124045006 124045221 -18226223 + MIR SINE MIR 10 217 -45 2101 111 0 3 chr9 124045221 124045519 -18225925 - AluSg SINE Alu -12 298 2 310 332 44 76 chr9 124045519 124045553 -18225891 + MIR SINE MIR 217 251 -11 268 276 77 66 chr9 124045603 124045799 -18225645 - L2 LINE L2 -2 3311 3114 349 181 11 106 chr9 124045989 124046083 -18225361 + MER21B LTR ERV1 12 96 -767 3111 225 76 25 chr9 124046090 124046528 -18224916 + MER21B LTR ERV1 19 433 -430 2167 117 0 0 chr9 124046528 124046835 -18224609 + AluSx SINE Alu 1 307 -5 3111 225 76 25 chr9 124046835 124047197 -18224247 + MER21B LTR ERV1 433 860 -3 243 247 12 35 chr9 124047604 124047689 -18223755 + L2 LINE L2 3186 3268 -4 190 200 0 0 chr9 124047756 124047786 -18223658 - L2 LINE L2 -20 3293 3264 180 310 69 0 chr9 124047786 124047814 -18223630 - MIR SINE MIR -14 248 187 198 0 0 0 chr9 124047821 124047843 -18223601 + (TA)n Simple_repeat Simple_repeat 2 23 0 1982 134 30 0 chr9 124047843 124048142 -18223302 - AluJb SINE Alu -4 308 1 2059 220 85 104 chr9 124048150 124048644 -18222800 - L1MC4 LINE L1 -2 8040 7538 2049 103 13 3 chr9 124048644 124048945 -18222499 - AluSx SINE Alu -8 304 1 2059 220 85 104 chr9 124048945 124049644 -18221800 - L1MC4 LINE L1 -504 7538 6870 272 330 94 0 chr9 124049651 124049757 -18221687 - MIR SINE MIR -61 147 32 569 240 127 13 chr9 124050031 124050181 -18221263 + MIR SINE MIR 82 248 -14 189 264 90 57 chr9 124050276 124050387 -18221057 + MIR SINE MIR 41 153 -61 21 36 0 0 chr9 124051206 124051234 -18220210 + AT_rich Low_complexity Low_complexity 1 28 0 1799 129 40 0 chr9 124051237 124051509 -18219935 + AluSg SINE Alu 1 283 -27 271 295 57 57 chr9 124051619 124051741 -18219703 + L2 LINE L2 3192 3313 0 694 181 0 8 chr9 124051998 124052125 -18219319 - L1MB1 LINE L1 -1 6167 6042 1028 255 81 78 chr9 124052287 124052405 -18219039 - ERVL LTR ERVL -742 5022 4906 822 239 182 63 chr9 124052405 124052629 -18218815 + MLT1H1 LTR MaLR 1 197 -358 1978 103 0 14 chr9 124052629 124052911 -18218533 + AluSg SINE Alu 1 278 -32 234 0 0 0 chr9 124052911 124052937 -18218507 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 822 239 182 63 chr9 124052937 124053205 -18218239 + MLT1H1 LTR MaLR 196 553 -2 1028 255 81 78 chr9 124053205 124053324 -18218120 - ERVL LTR ERVL -858 4906 4789 814 254 154 46 chr9 124053324 124053785 -18217659 - MLT1J LTR MaLR 0 511 1 1028 255 81 78 chr9 124053785 124054165 -18217279 - ERVL LTR ERVL -975 4789 4402 665 241 0 14 chr9 124054172 124054317 -18217127 + FRAM SINE Alu 4 146 -30 182 88 0 29 chr9 124054317 124054351 -18217093 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 457 265 118 49 chr9 124055140 124055385 -18216059 - MLT1J LTR MaLR -249 262 1 866 228 62 33 chr9 124055418 124055659 -18215785 - MLT1C LTR MaLR 0 467 220 1892 148 16 0 chr9 124055688 124055991 -18215453 - AluSg SINE Alu -2 308 1 1484 166 47 20 chr9 124056762 124057058 -18214386 + AluJb SINE Alu 1 304 -8 2195 151 70 28 chr9 124057645 124058159 -18213285 + MLT2A2 LTR ERVL 1 554 0 831 203 21 70 chr9 124059590 124059832 -18211612 - MLT1C LTR MaLR -160 230 1 315 295 123 70 chr9 124060474 124060905 -18210539 + L1MC4a LINE L1 4205 4658 -1488 366 331 67 17 chr9 124060954 124061132 -18210312 + MIR SINE MIR 50 236 -26 243 268 116 45 chr9 124061600 124061712 -18209732 + MIR SINE MIR 131 250 -12 561 240 131 27 chr9 124062135 124062356 -18209088 + MLT1L LTR MaLR 1 244 -371 311 265 0 92 chr9 124062469 124062517 -18208927 + L1MC4a LINE L1 5528 5564 -2244 2266 170 53 36 chr9 124062517 124063011 -18208433 - MLT1D LTR MaLR -3 502 1 311 265 0 92 chr9 124063011 124063060 -18208384 + L1MC4a LINE L1 5564 5616 -2192 2999 204 25 55 chr9 124063072 124063129 -18208315 - L1ME1 LINE L1 -6 6160 6103 1969 104 0 11 chr9 124063129 124063407 -18208037 - AluSq SINE Alu -38 275 1 2999 204 25 55 chr9 124063407 124064093 -18207351 - L1ME1 LINE L1 -63 6103 5439 868 259 70 13 chr9 124064093 124064406 -18207038 + L1MC4a LINE L1 5622 5952 -1856 318 268 151 114 chr9 124064428 124064727 -18206717 + L1MC4a LINE L1 6046 6355 -1453 1685 144 11 25 chr9 124064888 124065193 -18206251 - AluJo SINE Alu 0 307 7 977 181 0 6 chr9 124065296 124065456 -18205988 - FAM SINE Alu -16 159 1 711 245 34 53 chr9 124065485 124065807 -18205637 + L1MC5 LINE L1 7610 7925 -36 304 303 0 0 chr9 124065839 124065915 -18205529 + MLT1L LTR MaLR 338 413 -202 221 382 89 8 chr9 124067622 124067745 -18203699 - MIR3 SINE MIR -64 144 12 1048 108 0 0 chr9 124067753 124067892 -18203552 - AluSg/x SINE Alu -34 278 140 259 167 14 28 chr9 124067952 124068024 -18203420 + CT-rich Low_complexity Low_complexity 1 71 0 467 326 126 29 chr9 124068104 124068689 -18202755 - L2 LINE L2 -161 3152 2507 1813 124 0 57 chr9 124068732 124069046 -18202398 + AluJb SINE Alu 1 296 -16 332 152 98 33 chr9 124069305 124069397 -18202047 + MLT1K LTR MaLR 189 286 -302 1082 192 0 30 chr9 124069763 124070034 -18201410 - AluSg SINE Alu -10 300 38 349 97 27 89 chr9 124070317 124070475 -18200969 + AluSp/q SINE Alu 220 303 0 203 307 31 63 chr9 124071036 124071163 -18200281 - MIR3 SINE MIR -83 125 3 649 271 38 9 chr9 124071216 124071426 -18200018 + MIR SINE MIR 35 250 -12 204 276 17 0 chr9 124071436 124071494 -18199950 + (TTA)n Simple_repeat Simple_repeat 2 60 0 2271 103 0 0 chr9 124071513 124071825 -18199619 - AluSq SINE Alu -1 312 1 384 219 23 18 chr9 124072004 124072131 -18199313 - MIR SINE MIR -5 203 77 258 355 32 13 chr9 124072300 124072455 -18198989 + L2 LINE L2 2518 2675 -639 22 35 0 0 chr9 124072464 124072493 -18198951 + AT_rich Low_complexity Low_complexity 1 29 0 1010 96 0 15 chr9 124072566 124072701 -18198743 + FLAM_C SINE Alu 1 133 0 275 331 101 24 chr9 124074360 124074529 -18196915 - MIR SINE MIR -12 250 69 262 238 12 38 chr9 124074675 124074755 -18196689 + CT-rich Low_complexity Low_complexity 5 82 0 423 278 0 26 chr9 124075110 124075225 -18196219 - MIR SINE MIR -63 145 34 1698 160 0 19 chr9 124075785 124076103 -18195341 + AluJo SINE Alu 1 312 0 1328 131 111 8 chr9 124076106 124076360 -18195084 + L1MD3 LINE L1 7613 7987 -8 308 182 36 0 chr9 124076394 124076449 -18194995 + L1ME4a LINE L1 5467 5523 -2285 779 187 93 81 chr9 124076519 124076769 -18194675 - MIR SINE MIR 0 262 21 2026 103 19 13 chr9 124076769 124077080 -18194364 - AluSq SINE Alu 0 313 1 358 258 150 11 chr9 124077118 124077380 -18194064 + L1ME4a LINE L1 5612 5913 -208 1771 138 0 20 chr9 124077404 124077701 -18193743 + AluJb SINE Alu 1 291 -21 268 164 0 18 chr9 124077654 124077709 -18193735 + Alu SINE Alu 246 299 -3 280 120 141 33 chr9 124077856 124077948 -18193496 + L1ME4a LINE L1 6020 6121 0 253 277 34 59 chr9 124078205 124078324 -18193120 - MIR SINE MIR -38 224 109 255 185 185 65 chr9 124078420 124078512 -18192932 - MIR SINE MIR -76 132 30 528 295 58 12 chr9 124078971 124079144 -18192300 - MIR SINE MIR -71 191 11 192 274 75 57 chr9 124080466 124080572 -18190872 + MIR SINE MIR 153 260 -2 1465 130 14 0 chr9 124081211 124081426 -18190018 + MER1B DNA MER1_type 122 339 0 2468 67 0 0 chr9 124081518 124081817 -18189627 + AluY SINE Alu 1 299 -12 204 152 0 22 chr9 124081818 124081864 -18189580 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 560 293 29 6 chr9 124082437 124082611 -18188833 + MER5A DNA MER1_type 1 189 0 228 35 0 0 chr9 124082627 124082656 -18188788 + (TG)n Simple_repeat Simple_repeat 2 30 0 1275 212 76 93 chr9 124082746 124083281 -18188163 - MER34B LTR ERV1 -1 564 38 2128 105 3 41 chr9 124083281 124083596 -18187848 + AluSx SINE Alu 1 303 -9 1275 212 76 93 chr9 124083596 124083627 -18187817 - MER34B LTR ERV1 -527 38 8 1543 258 54 32 chr9 124084498 124085052 -18186392 - MER74A LTR ERVL -1 621 1 334 291 97 0 chr9 124085252 124085386 -18186058 + L2 LINE L2 3167 3313 0 385 347 51 20 chr9 124085389 124085585 -18185859 + MIR SINE MIR 54 255 -7 286 219 0 55 chr9 124086049 124086122 -18185322 - L2 LINE L2 -1018 2296 2228 1699 66 0 0 chr9 124086438 124086635 -18184809 + AluY SINE Alu 1 197 -114 2027 100 0 3 chr9 124086849 124087139 -18184305 - L1MC/D LINE L1 -607 5726 5438 2427 107 0 0 chr9 124087185 124087493 -18183951 + AluSg SINE Alu 2 309 -1 396 260 89 8 chr9 124088034 124088157 -18183287 - MIR SINE MIR -118 144 12 2161 128 7 0 chr9 124088368 124088666 -18182778 - AluSx SINE Alu -10 302 3 569 165 43 35 chr9 124088705 124088820 -18182624 - AluSg/x SINE Alu -12 297 182 2379 93 3 13 chr9 124088820 124089130 -18182314 - AluSg SINE Alu -3 307 1 289 253 40 10 chr9 124089315 124089414 -18182030 + MLT1I LTR MaLR 308 409 0 349 287 165 18 chr9 124089579 124089743 -18181701 + L2 LINE L2 2181 2368 -946 286 290 103 47 chr9 124089804 124090018 -18181426 - L2 LINE L2 -1303 2011 1786 2352 98 0 3 chr9 124090018 124090315 -18181129 - AluSq SINE Alu -17 296 1 34053 30 1 1 chr9 124090429 124095169 -18176275 - L1PA3 LINE L1 -261 5894 1156 3079 131 86 11 chr9 124095160 124095235 -18176209 - L1PBa LINE L1 -4045 3520 3452 * 1846 146 7 0 chr9 124095235 124095277 -18176167 - AluSx SINE Alu 0 312 272 210 71 0 0 chr9 124095277 124095305 -18176139 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1846 146 7 0 chr9 124095305 124095537 -18175907 - AluSx SINE Alu -40 272 36 3079 131 86 11 chr9 124095537 124096078 -18175366 - L1PBa LINE L1 -4113 3452 2876 2256 95 3 0 chr9 124096087 124096370 -18175074 - AluSx SINE Alu -28 284 1 2292 105 20 0 chr9 124096374 124096680 -18174764 - AluSx SINE Alu 0 312 1 767 241 53 13 chr9 124096680 124096908 -18174536 - L1ME3A LINE L1 -221 5949 5713 2219 82 0 0 chr9 124096908 124097187 -18174257 - AluY SINE Alu -6 305 27 2219 90 7 17 chr9 124097290 124097589 -18173855 - AluSq SINE Alu -17 296 1 356 239 0 34 chr9 124097620 124097708 -18173736 + L2 LINE L2 3228 3312 -1 760 179 16 0 chr9 124097749 124097872 -18173572 + FAM SINE Alu 43 167 -18 321 89 0 0 chr9 124097878 124097923 -18173521 + (CA)n Simple_repeat Simple_repeat 2 46 0 2318 105 0 0 chr9 124098005 124098301 -18173143 + AluSx SINE Alu 1 296 -16 2491 73 7 0 chr9 124098423 124098724 -18172720 - AluSg SINE Alu -7 303 1 407 294 140 33 chr9 124099200 124099414 -18172030 - MIR SINE MIR -12 250 14 262 273 148 0 chr9 124099469 124099597 -18171847 - MIR3 SINE MIR -53 155 9 256 324 48 9 chr9 124099937 124100042 -18171402 - MIR3 SINE MIR -13 195 87 193 208 0 62 chr9 124100232 124100280 -18171164 + MIR SINE MIR 102 146 -62 278 207 0 0 chr9 124101395 124101453 -18169991 - L1ME4a LINE L1 -1 6120 6063 358 60 0 4 chr9 124101464 124101665 -18169779 + AluSq SINE Alu 22 297 -4 317 86 0 0 chr9 124101765 124101823 -18169621 - L1MB3 LINE L1 0 6183 6126 839 100 0 39 chr9 124101823 124101947 -18169497 - L1PB4 LINE L1 -2 6154 6030 269 254 0 0 chr9 124101989 124102052 -18169392 - MIR SINE MIR -80 182 120 233 306 25 33 chr9 124102764 124102885 -18168559 + MIR SINE MIR 77 196 -66 1167 128 6 28 chr9 124103054 124103233 -18168211 - AluSg/x SINE Alu -8 304 130 2258 116 3 10 chr9 124103237 124103540 -18167904 - AluSq SINE Alu -12 301 1 1797 187 3 0 chr9 124103542 124103841 -18167603 - AluJb SINE Alu -12 300 1 256 299 34 26 chr9 124104097 124104214 -18167230 - L1ME LINE L1 -466 5704 5587 213 279 54 81 chr9 124104214 124104325 -18167119 + L3b LINE CR1 1343 1450 -133 2500 74 0 10 chr9 124104613 124104923 -18166521 + AluSc SINE Alu 3 309 0 183 42 0 0 chr9 124105243 124105267 -18166177 + (TG)n Simple_repeat Simple_repeat 2 25 0 205 347 31 0 chr9 124106536 124106637 -18164807 + MIR SINE MIR 85 141 -67 884 252 18 9 chr9 124106784 124107002 -18164442 + MIR SINE MIR 8 227 -35 1354 211 60 74 chr9 124107018 124107088 -18164356 - MER69 DNA AcHobo -2 2524 2455 2423 79 0 13 chr9 124107088 124107393 -18164051 + AluY SINE Alu 1 301 -10 1354 211 60 74 chr9 124107393 124107768 -18163676 - MER69 DNA AcHobo -71 2455 2085 335 209 47 12 chr9 124108172 124108258 -18163186 - MER69A DNA AcHobo -88 89 1 833 280 28 0 chr9 124109021 124109239 -18162205 + MIR SINE MIR 3 226 -36 2154 120 20 3 chr9 124109239 124109539 -18161905 + AluSx SINE Alu 1 305 -7 2089 173 0 12 chr9 124109616 124109940 -18161504 - 7SLRNA srpRNA srpRNA 0 320 1 2385 117 0 0 chr9 124110402 124110710 -18160734 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr9 124110867 124110890 -18160554 + AT_rich Low_complexity Low_complexity 1 23 0 333 261 44 59 chr9 124110933 124111099 -18160345 - MIR SINE MIR -60 202 40 2140 112 42 0 chr9 124111308 124111595 -18159849 - AluSx SINE Alu -13 299 1 2291 75 3 3 chr9 124111721 124112038 -18159406 + AluSp SINE Alu 3 319 0 538 326 149 21 chr9 124112450 124112586 -18158858 - L2 LINE L2 0 3272 3155 2189 130 10 0 chr9 124112586 124112894 -18158550 + AluSx SINE Alu 1 311 -1 538 326 149 21 chr9 124112894 124113045 -18158399 - L2 LINE L2 -117 3155 2948 1907 131 6 72 chr9 124114364 124114684 -18156760 + AluSx SINE Alu 1 299 -13 327 230 37 104 chr9 124114707 124114842 -18156602 + MIR SINE MIR 58 183 -79 690 290 36 16 chr9 124115011 124115115 -18156329 - MIR SINE MIR 0 262 162 1924 149 67 6 chr9 124115115 124115443 -18156001 - MER7A DNA MER2_type 0 346 1 690 290 36 16 chr9 124115443 124115586 -18155858 - MIR SINE MIR -100 162 15 1463 140 0 0 chr9 124116021 124116248 -18155196 + AluSg/x SINE Alu 82 308 0 1860 159 3 19 chr9 124116258 124116572 -18154872 + AluJo SINE Alu 1 309 -3 1358 98 5 5 chr9 124117213 124117407 -18154037 + L1PB1 LINE L1 5958 6151 0 633 186 130 67 chr9 124117420 124117499 -18153945 - L1MD3 LINE L1 -1 7994 7921 1979 119 58 0 chr9 124117499 124117776 -18153668 + AluSg SINE Alu 1 293 -17 633 186 130 67 chr9 124117776 124117851 -18153593 - L1MD3 LINE L1 -74 7921 7852 2329 109 0 0 chr9 124117851 124118145 -18153299 + AluSp SINE Alu 1 294 -19 633 186 130 67 chr9 124118145 124118242 -18153202 - L1MD3 LINE L1 -143 7852 7726 213 39 0 0 chr9 124118281 124118307 -18153137 + (TAGA)n Simple_repeat Simple_repeat 3 28 0 1243 126 9 37 chr9 124118310 124118525 -18152919 - THE1B LTR MaLR -2 362 154 2440 89 7 0 chr9 124118527 124118831 -18152613 + AluSx SINE Alu 1 306 -6 657 177 18 0 chr9 124118831 124118944 -18152500 - MER51-int LTR ERV1 -4613 3203 3089 1618 115 0 0 chr9 124118944 124119153 -18152291 + AluSc SINE Alu 10 218 -91 670 287 17 42 chr9 124120009 124120246 -18151198 - MIR SINE MIR -9 253 23 243 88 0 0 chr9 124120278 124120312 -18151132 + (TG)n Simple_repeat Simple_repeat 1 34 0 180 276 17 17 chr9 124120345 124120403 -18151041 + MER5A DNA MER1_type 37 94 -95 1674 191 7 10 chr9 124120798 124120952 -18150492 - AluJo SINE Alu -25 287 133 1758 131 29 35 chr9 124120952 124121265 -18150179 - AluY SINE Alu 0 311 1 1674 191 7 10 chr9 124121265 124121398 -18150046 - AluJo SINE Alu -179 133 1 224 335 0 12 chr9 124121812 124121910 -18149534 - MIR SINE MIR -63 145 59 333 261 82 67 chr9 124122018 124122190 -18149254 + MIR3 SINE MIR 29 191 -17 201 250 79 92 chr9 124122796 124122948 -18148496 - MIR SINE MIR -69 193 44 1567 164 55 0 chr9 124123255 124123533 -18147911 + AluSx SINE Alu 13 304 0 230 331 95 18 chr9 124123566 124123735 -18147709 + L2 LINE L2 2902 3083 -189 405 278 99 32 chr9 124124164 124124416 -18147028 + L2 LINE L2 2227 2495 -819 2135 133 0 3 chr9 124124449 124124743 -18146701 - AluSx SINE Alu -15 297 5 529 110 64 28 chr9 124124749 124124858 -18146586 - L1MA4A LINE L1 0 6303 6191 243 288 100 0 chr9 124125142 124125222 -18146222 - L2 LINE L2 -42 3230 3143 1159 203 19 15 chr9 124125436 124125697 -18145747 - MER58B DNA MER1_type -2 339 78 1550 162 123 0 chr9 124125712 124125965 -18145479 + AluSx SINE Alu 15 298 -14 646 126 63 25 chr9 124125966 124126145 -18145299 + AluJo SINE Alu 84 303 -9 1214 182 23 14 chr9 124126146 124126366 -18145078 + AluJb SINE Alu 85 306 -6 1723 174 0 11 chr9 124126383 124126665 -18144779 + AluJo SINE Alu 33 311 -1 2272 115 0 0 chr9 124126671 124126967 -18144477 + AluSq SINE Alu 1 296 -17 412 385 26 29 chr9 124127113 124127458 -18143986 - L1MC4a LINE L1 -1874 5934 5591 1781 168 0 30 chr9 124127843 124128147 -18143297 - AluJo SINE Alu -17 295 1 333 318 50 27 chr9 124128233 124128548 -18142896 - L1MDa LINE L1 -4862 1668 1321 2109 125 20 0 chr9 124128548 124128854 -18142590 - AluSx SINE Alu -10 302 1 333 318 50 27 chr9 124128854 124128923 -18142521 - L1MDa LINE L1 -5209 1321 1255 * 366 98 107 16 chr9 124128855 124128977 -18142467 + CT-rich Low_complexity Low_complexity 4 136 0 1785 178 0 10 chr9 124128929 124129277 -18142167 - AluJo SINE Alu -22 290 1 353 310 16 58 chr9 124129456 124129714 -18141730 - L2 LINE L2 -214 3058 2812 318 309 50 0 chr9 124129763 124129886 -18141558 + MIR SINE MIR 13 147 -61 309 264 43 36 chr9 124129915 124130055 -18141389 + MER5A DNA MER1_type 13 153 -36 289 288 59 46 chr9 124129931 124130084 -18141360 - MER5B DNA MER1_type -16 162 8 * 910 291 109 19 chr9 124130115 124130490 -18140954 + L2 LINE L2 2899 3307 -6 186 43 0 0 chr9 124130523 124130546 -18140898 + (T)n Simple_repeat Simple_repeat 1 23 0 982 191 0 29 chr9 124130558 124130762 -18140682 + AluJo SINE Alu 23 220 -92 510 161 58 0 chr9 124130780 124130867 -18140577 + AluSg/x SINE Alu 157 248 -62 1193 157 36 14 chr9 124130867 124131090 -18140354 + AluJo SINE Alu 85 312 0 1091 37 11 48 chr9 124131090 124131109 -18140335 + (GAAA)n Simple_repeat Simple_repeat 1 198 0 1091 37 11 48 chr9 124131109 124131296 -18140148 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 309 68 0 0 chr9 124131316 124131360 -18140084 + (CAGG)n Simple_repeat Simple_repeat 2 45 0 192 77 0 0 chr9 124131515 124131541 -18139903 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 216 355 50 8 chr9 124131549 124131670 -18139774 + MIR3 SINE MIR 79 204 -4 228 156 10 62 chr9 124132262 124132358 -18139086 + GA-rich Low_complexity Low_complexity 1 91 0 2282 88 7 0 chr9 124132452 124132760 -18138684 - AluSp SINE Alu -3 310 1 789 284 28 0 chr9 124132760 124132978 -18138466 - MIR SINE MIR -36 226 3 1475 164 55 0 chr9 124133240 124133518 -18137926 + AluSx SINE Alu 13 304 0 220 349 89 12 chr9 124133551 124133720 -18137724 + L2 LINE L2 2902 3083 -189 568 306 151 29 chr9 124134149 124134432 -18137012 + L2 LINE L2 2227 2474 -839 2098 130 0 0 chr9 124134432 124134731 -18136713 - AluSx SINE Alu -13 299 1 568 306 151 29 chr9 124134731 124135172 -18136272 + L2 LINE L2 2474 3037 -276 570 311 15 11 chr9 124135405 124135627 -18135817 + L1M1 LINE L1 5614 5836 -304 302 366 15 0 chr9 124135764 124135895 -18135549 - MIR3 SINE MIR -54 154 22 237 136 0 12 chr9 124135958 124136009 -18135435 + MIR SINE MIR 97 145 -63 579 336 52 0 chr9 124136080 124136312 -18135132 - MIR SINE MIR -14 248 5 396 313 46 20 chr9 124137115 124137310 -18134134 + L2 LINE L2 2917 3116 -156 2324 75 0 10 chr9 124137336 124137642 -18133802 - AluSx SINE Alu -6 306 4 424 343 34 20 chr9 124137720 124137924 -18133520 + MIR SINE MIR 43 249 -13 664 337 121 22 chr9 124138112 124138527 -18132917 + L2 LINE L2 2817 3272 0 215 315 55 47 chr9 124140415 124140542 -18130902 - L2 LINE L2 -77 3195 3068 185 259 17 17 chr9 124141280 124141338 -18130106 - L2 LINE L2 -200 3072 3015 1927 135 0 10 chr9 124141442 124141731 -18129713 + AluSx SINE Alu 1 286 -26 1225 201 4 28 chr9 124141746 124142000 -18129444 - AluJo SINE Alu -64 248 1 1855 132 0 7 chr9 124142003 124142290 -18129154 - AluJb SINE Alu 0 312 28 639 214 63 38 chr9 124142296 124142455 -18128989 - MLT1A2 LTR MaLR -211 163 1 1928 135 7 0 chr9 124142461 124142750 -18128694 - AluJo SINE Alu -21 291 1 275 320 233 0 chr9 124142864 124143267 -18128177 + L2 LINE L2 2817 3313 0 241 225 14 28 chr9 124143300 124143371 -18128073 - L2 LINE L2 -340 2973 2904 440 327 25 40 chr9 124144118 124144303 -18127141 + L2 LINE L2 3074 3257 -15 324 70 0 0 chr9 124144303 124144346 -18127098 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 440 327 25 40 chr9 124144346 124144362 -18127082 + L2 LINE L2 3257 3272 0 218 294 35 0 chr9 124144385 124144470 -18126974 + MIR3 SINE MIR 68 155 -53 269 276 61 0 chr9 124144485 124144583 -18126861 + MIR SINE MIR 42 145 -63 440 262 113 54 chr9 124144913 124144974 -18126470 - MIR SINE MIR -2 260 204 2097 111 0 7 chr9 124144974 124145290 -18126154 - AluSp SINE Alu 0 313 2 2008 134 7 3 chr9 124145291 124145598 -18125846 - AluSx SINE Alu -4 308 1 440 262 113 54 chr9 124145598 124145755 -18125689 - MIR SINE MIR -57 205 27 248 287 274 0 chr9 124146439 124146626 -18124818 - MIR SINE MIR -13 249 16 210 152 22 43 chr9 124147411 124147457 -18123987 - MIR SINE MIR -103 159 115 540 293 88 47 chr9 124147919 124148528 -18122916 + L2 LINE L2 2522 3163 -109 235 296 84 20 chr9 124148552 124148755 -18122689 - L2 LINE L2 -812 2502 2287 195 290 192 47 chr9 124148890 124149083 -18122361 + L2 LINE L2 3025 3245 -27 1185 93 0 12 chr9 124150141 124150303 -18121141 - AluSg SINE Alu -150 160 1 1066 179 10 0 chr9 124150303 124150503 -18120941 + AluJo SINE Alu 104 305 -7 229 390 27 32 chr9 124150503 124150690 -18120754 + L2 LINE L2 2896 3081 -191 317 156 47 31 chr9 124151220 124151284 -18120160 + MIR SINE MIR 108 172 -90 1528 174 3 68 chr9 124151919 124152241 -18119203 + AluJo SINE Alu 11 311 -1 611 125 28 125 chr9 124152260 124152404 -18119040 + FRAM SINE Alu 47 176 0 2146 84 0 4 chr9 124152404 124152679 -18118765 - AluSq SINE Alu -19 294 21 1446 139 48 0 chr9 124152679 124152909 -18118535 + MER52A LTR ERV1 630 870 -885 1547 172 208 20 chr9 124152920 124153353 -18118091 - MER52A LTR ERV1 -1151 604 1 1271 145 7 110 chr9 124153353 124153643 -18117801 + AluJb SINE Alu 31 290 -22 1828 125 44 7 chr9 124153646 124153943 -18117501 - AluSx SINE Alu -4 308 1 1114 263 15 12 chr9 124153969 124154307 -18117137 + L1MCb LINE L1 741 1079 -4966 628 241 18 24 chr9 124154310 124154476 -18116968 + MER31B LTR ERV1 1 165 -301 1098 105 0 0 chr9 124154510 124154653 -18116791 + AluJb SINE Alu 3 145 -167 2103 110 0 10 chr9 124154660 124154960 -18116484 + AluSq SINE Alu 6 302 -11 417 234 189 41 chr9 124154976 124155266 -18116178 + L1MC4 LINE L1 7605 8034 -8 255 167 133 0 chr9 124155243 124155303 -18116141 + L1MCb LINE L1 1678 1745 -4819 * 1838 166 0 10 chr9 124155305 124155613 -18115831 + AluJb SINE Alu 1 305 -7 409 346 3 33 chr9 124155733 124156039 -18115405 - L1MC4a LINE L1 -1829 5979 5683 1542 142 0 8 chr9 124156063 124156302 -18115142 + AluJo SINE Alu 1 237 -75 249 64 85 0 chr9 124156306 124156353 -18115091 - Alu SINE Alu 0 300 250 315 94 38 0 chr9 124156453 124156506 -18114938 + L1PB1 LINE L1 6097 6151 0 619 186 131 63 chr9 124156518 124156596 -18114848 - L1MD3 LINE L1 -1 7994 7923 1918 108 58 0 chr9 124156596 124156873 -18114571 + AluSg SINE Alu 1 293 -17 619 186 131 63 chr9 124156873 124156948 -18114496 - L1MD3 LINE L1 -72 7923 7854 2197 109 0 0 chr9 124156948 124157242 -18114202 + AluSp SINE Alu 1 294 -19 619 186 131 63 chr9 124157242 124157339 -18114105 - L1MD3 LINE L1 -141 7854 7726 213 39 0 0 chr9 124157378 124157404 -18114040 + (TAGA)n Simple_repeat Simple_repeat 3 28 0 1255 126 9 37 chr9 124157407 124157622 -18113822 - THE1B LTR MaLR -2 362 154 2155 104 0 0 chr9 124157624 124157912 -18113532 + AluSg SINE Alu 1 288 -22 4561 159 25 62 chr9 124157912 124158539 -18112905 + MER61E-int LTR ERV1 4617 5266 -1730 1520 106 0 0 chr9 124158539 124158738 -18112706 + AluSx SINE Alu 1 199 -113 4561 159 25 62 chr9 124158738 124159514 -18111930 + MER61E-int LTR ERV1 5266 6994 -2 608 72 0 0 chr9 124159518 124159601 -18111843 + MER61E LTR ERV1 1 83 -486 323 182 0 11 chr9 124160292 124160380 -18111064 + GA-rich Low_complexity Low_complexity 2 88 0 3236 123 20 12 chr9 124160856 124161350 -18110094 + MER61E LTR ERV1 68 565 -4 1346 165 32 28 chr9 124161356 124161605 -18109839 - ERVL LTR ERVL -993 4771 4522 860 216 6 0 chr9 124161605 124161772 -18109672 + FRAM SINE Alu 1 159 -17 7851 140 23 6 chr9 124161772 124163077 -18108367 - ERVL LTR ERVL -1177 4477 3148 934 76 0 0 chr9 124163146 124163264 -18108180 - ERVL LTR ERVL -2625 3139 3022 1945 109 33 149 chr9 124163310 124163580 -18107864 - MSTA LTR MaLR 0 428 128 1783 177 10 3 chr9 124163580 124163890 -18107554 - AluJb SINE Alu 0 312 1 1945 109 33 149 chr9 124163890 124163917 -18107527 - MSTA LTR MaLR -300 128 99 2067 122 0 3 chr9 124163917 124164213 -18107231 + AluSg SINE Alu 1 295 -15 2220 107 7 0 chr9 124164215 124164523 -18106921 + AluSg SINE Alu 1 310 0 1945 109 33 149 chr9 124164523 124164673 -18106771 - MSTA LTR MaLR -330 98 -68 2302 121 8 33 chr9 124164673 124165037 -18106407 + THE1A LTR MaLR 1 355 0 12675 75 2 1 chr9 124165037 124166615 -18104829 + THE1A-int LTR MaLR 1 1580 0 2302 107 11 36 chr9 124166615 124166978 -18104466 + THE1A LTR MaLR 1 354 -1 1945 109 33 149 chr9 124166978 124167007 -18104437 - MSTA LTR MaLR -396 32 1 826 242 67 81 chr9 124167009 124167054 -18104390 + L1MD3 LINE L1 6614 6658 -1337 1801 167 51 91 chr9 124167054 124167349 -18104095 - MLT2D LTR ERVL 0 414 140 1682 119 0 4 chr9 124167349 124167592 -18103852 - AluSx SINE Alu -18 294 53 1801 167 51 91 chr9 124167592 124167727 -18103717 - MLT2D LTR ERVL -274 140 1 826 242 67 81 chr9 124167727 124167979 -18103465 + L1MD3 LINE L1 6658 6872 -1123 1991 119 0 50 chr9 124167993 124168313 -18103131 + AluSx SINE Alu 9 312 0 215 360 27 0 chr9 124168316 124168391 -18103053 - MIR SINE MIR -140 122 46 2349 87 0 16 chr9 124168471 124168783 -18102661 - AluY SINE Alu -4 307 1 2093 136 0 7 chr9 124168783 124169093 -18102351 - AluSx SINE Alu -4 308 1 935 317 45 32 chr9 124169107 124169691 -18101753 - L2 LINE L2 -905 2409 1819 434 271 116 70 chr9 124169712 124170293 -18101151 + HAL1 LINE L1 6 655 -1852 916 116 22 39 chr9 124170295 124170502 -18100942 - AluSq SINE Alu 0 310 107 25 65 0 0 chr9 124170513 124170559 -18100885 + GC_rich Low_complexity Low_complexity 1 46 0 285 151 0 0 chr9 124170659 124170712 -18100732 + Alu SINE Alu 249 301 0 211 352 23 11 chr9 124170712 124170800 -18100644 - MIR SINE MIR -128 134 46 2350 82 7 0 chr9 124170880 124171185 -18100259 - AluY SINE Alu -4 307 1 2117 128 0 0 chr9 124171837 124172133 -18099311 + AluSx SINE Alu 4 299 -13 1886 133 25 0 chr9 124172505 124172791 -18098653 + AluSq SINE Alu 5 297 -16 2130 98 7 3 chr9 124172793 124173089 -18098355 + AluSp SINE Alu 3 299 -14 1532 208 111 56 chr9 124173413 124173588 -18097856 - LTR40b LTR ERVL -4 458 294 879 162 30 76 chr9 124173588 124173786 -18097658 + MER53 DNA DNA 1 189 0 1532 208 111 56 chr9 124173786 124174042 -18097402 - LTR40b LTR ERVL -168 294 3 457 273 41 0 chr9 124174266 124174387 -18097057 - L2 LINE L2 -1 3312 3187 2083 117 3 22 chr9 124174424 124174740 -18096704 + AluSg SINE Alu 1 310 0 357 92 169 0 chr9 124175102 124175167 -18096277 + AluJ/FLAM SINE Alu 2 77 -225 28 29 0 0 chr9 124175177 124175212 -18096232 + AT_rich Low_complexity Low_complexity 1 35 0 388 317 7 28 chr9 124175217 124175358 -18096086 + MIR SINE MIR 8 144 -71 351 219 23 12 chr9 124175450 124175561 -18095883 - MIR SINE MIR -48 214 103 1146 158 0 0 chr9 124175584 124175767 -18095677 - AluSx SINE Alu -18 294 112 758 102 0 19 chr9 124175834 124175942 -18095502 - AluSx SINE Alu -206 107 2 2306 80 6 6 chr9 124177221 124177532 -18093912 + AluSq SINE Alu 1 311 -2 557 188 80 0 chr9 124177903 124178015 -18093429 + FLAM_C SINE Alu 9 129 -14 1878 117 0 0 chr9 124178027 124178291 -18093153 + AluSq SINE Alu 1 264 -49 342 287 184 0 chr9 124178353 124178489 -18092955 + MER5A DNA MER1_type 29 189 0 308 263 263 0 chr9 124179317 124179454 -18091990 + MIR SINE MIR 20 192 -70 2175 115 20 0 chr9 124179693 124179988 -18091456 - AluSx SINE Alu -11 301 1 1355 164 62 22 chr9 124179988 124180262 -18091182 - AluJo SINE Alu -14 298 14 1341 140 0 5 chr9 124180641 124180834 -18090610 - AluSc SINE Alu -117 192 1 1116 168 42 0 chr9 124180836 124181026 -18090418 + AluJb SINE Alu 107 304 -8 2312 106 13 0 chr9 124181234 124181535 -18089909 + AluSg SINE Alu 1 305 -5 370 266 58 46 chr9 124181832 124182005 -18089439 + MIR3 SINE MIR 30 204 -4 2208 113 0 0 chr9 124182370 124182662 -18088782 + AluSq SINE Alu 1 292 -21 697 85 0 9 chr9 124182667 124182773 -18088671 - MER51A LTR ERV1 0 634 530 673 149 0 0 chr9 124182774 124182881 -18088563 + AluSg/x SINE Alu 201 307 -5 811 168 61 91 chr9 124182966 124183049 -18088395 - MER51-int LTR ERV1 -4537 3279 3195 2291 97 3 3 chr9 124183049 124183347 -18088097 + AluSg SINE Alu 7 304 -6 811 168 61 91 chr9 124183347 124183460 -18087984 - MER51-int LTR ERV1 -4621 3195 3089 629 171 0 0 chr9 124183460 124183565 -18087879 + AluY SINE Alu 10 114 -197 600 170 0 0 chr9 124184026 124184120 -18087324 - AluS SINE Alu -218 95 2 3686 124 18 22 chr9 124184121 124184749 -18086695 - MER51-int LTR ERV1 -556 1230 1141 2170 134 0 3 chr9 124184749 124185062 -18086382 - AluSx SINE Alu 0 312 1 3686 124 18 22 chr9 124185062 124185112 -18086332 - MER51-int LTR ERV1 -645 1141 1092 1358 109 0 0 chr9 124185120 124185304 -18086140 - AluJo SINE Alu -128 184 1 183 162 0 0 chr9 124187046 124187083 -18084361 + A-rich Low_complexity Low_complexity 1 37 0 239 301 150 8 chr9 124187315 124187448 -18083996 + MIR3 SINE MIR 36 187 -21 2093 101 4 0 chr9 124188415 124188682 -18082762 - AluSx SINE Alu -44 268 1 201 271 262 19 chr9 124188818 124188925 -18082519 - MIR SINE MIR -80 182 50 329 217 152 0 chr9 124189169 124189261 -18082183 - L1PA13 LINE L1 0 6163 6058 309 290 137 0 chr9 124190101 124190232 -18081212 - L3 LINE CR1 -16 1561 1413 2429 104 0 0 chr9 124190255 124190563 -18080881 - AluSx SINE Alu 0 312 5 529 110 64 28 chr9 124190569 124190678 -18080766 - L1MA4A LINE L1 0 6303 6191 243 288 100 0 chr9 124190962 124191042 -18080402 - L2 LINE L2 -42 3230 3143 1294 180 19 15 chr9 124191256 124191517 -18079927 - MER58B DNA MER1_type -2 339 78 1550 162 123 0 chr9 124191532 124191785 -18079659 + AluSx SINE Alu 15 298 -14 639 126 63 25 chr9 124191786 124191964 -18079480 + AluJo SINE Alu 84 302 -10 1228 176 23 14 chr9 124191965 124192186 -18079258 + AluJo SINE Alu 85 307 -5 1723 174 0 11 chr9 124192203 124192485 -18078959 + AluJo SINE Alu 33 311 -1 2300 108 0 0 chr9 124192491 124192787 -18078657 + AluSq SINE Alu 1 296 -17 391 388 26 29 chr9 124192933 124193278 -18078166 - L1MC4a LINE L1 -1874 5934 5591 573 28 0 0 chr9 124193509 124193580 -18077864 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 208 325 158 9 chr9 124193584 124193698 -18077746 - L2 LINE L2 -3 3269 3139 1435 269 151 46 chr9 124193709 124195176 -18076268 - L2 LINE L2 0 3313 1851 206 268 167 0 chr9 124195284 124195422 -18076022 - L2 LINE L2 -881 2433 2273 800 315 120 17 chr9 124195746 124195910 -18075534 - L2 LINE L2 0 3272 3126 2097 97 34 0 chr9 124195910 124196178 -18075266 + AluSx SINE Alu 3 279 -33 800 315 120 17 chr9 124196178 124196531 -18074913 - L2 LINE L2 -146 3126 2705 1840 166 3 19 chr9 124197343 124197657 -18073787 - AluJo SINE Alu -3 309 1 444 37 0 0 chr9 124197679 124197733 -18073711 + (TA)n Simple_repeat Simple_repeat 2 55 0 2182 103 0 14 chr9 124197848 124198138 -18073306 + AluSc SINE Alu 5 290 -19 2240 112 6 19 chr9 124198289 124198603 -18072841 - AluSx SINE Alu 0 312 3 425 289 128 39 chr9 124198612 124199097 -18072347 - L1MEc LINE L1 -4255 2141 1614 2242 122 10 0 chr9 124199264 124199568 -18071876 + AluSx SINE Alu 1 307 -5 215 233 14 14 chr9 124199986 124200059 -18071385 + (TG)n Simple_repeat Simple_repeat 1 73 0 199 296 20 41 chr9 124200101 124200199 -18071245 + L2 LINE L2 2917 3012 -260 1434 138 119 31 chr9 124200209 124200470 -18070974 + AluJb SINE Alu 15 298 -14 207 167 50 50 chr9 124200488 124200548 -18070896 + L2 LINE L2 3026 3085 -187 286 278 200 0 chr9 124201359 124201539 -18069905 + L2 LINE L2 3094 3309 -4 4226 86 11 0 chr9 124201605 124202153 -18069291 - MER41A LTR ERV1 0 554 1 1861 152 40 3 chr9 124203077 124203492 -18067952 - AluJb SINE Alu 0 426 1 2220 104 0 0 chr9 124203797 124204077 -18067367 - AluSx SINE Alu -11 301 22 224 226 57 0 chr9 124204606 124204659 -18066785 - L2 LINE L2 -1 3271 3216 194 175 316 0 chr9 124204626 124204683 -18066761 - MIR SINE MIR -18 244 170 * 906 195 202 8 chr9 124204824 124205081 -18066363 - MER46C DNA MER2_type -1 337 31 446 290 83 51 chr9 124205705 124205922 -18065522 - L2 LINE L2 -1 3271 3048 244 263 206 38 chr9 124205968 124206128 -18065316 + L2 LINE L2 2002 2188 -1126 1136 73 0 7 chr9 124206128 124206278 -18065166 - LTR8 LTR ERV1 0 691 543 * 1163 187 99 18 chr9 124206275 124206559 -18064885 - LTR8A LTR ERV1 -420 307 1 792 299 71 25 chr9 124206561 124206956 -18064488 + L2 LINE L2 2187 2599 -715 307 244 23 12 chr9 124207006 124207092 -18064352 + MER88 LTR ERVL 79 165 -299 * 1355 229 51 63 chr9 124207018 124207508 -18063936 - MER74B LTR ERVL -74 548 65 193 333 58 70 chr9 124207790 124207961 -18063483 + L2 LINE L2 2892 3060 -212 5020 50 8 7 chr9 124208501 124209115 -18062329 + L1PA7 LINE L1 5540 6154 0 183 42 0 0 chr9 124209794 124209818 -18061626 + (TG)n Simple_repeat Simple_repeat 2 25 0 208 322 50 25 chr9 124210012 124210133 -18061311 + L3 LINE CR1 822 945 -632 2376 113 0 3 chr9 124210155 124210465 -18060979 - AluSx SINE Alu -3 309 1 641 311 102 16 chr9 124210513 124210767 -18060677 + L3 LINE CR1 958 1233 -344 706 175 21 129 chr9 124210848 124210916 -18060528 + MIR SINE MIR 89 163 -99 1886 163 0 14 chr9 124210916 124211211 -18060233 + AluJo SINE Alu 1 291 -21 706 175 21 129 chr9 124211211 124211336 -18060108 + MIR SINE MIR 163 261 -1 1349 208 101 21 chr9 124211367 124211703 -18059741 - MLT1A2 LTR MaLR -11 363 1 201 108 0 0 chr9 124212110 124212147 -18059297 + (T)n Simple_repeat Simple_repeat 1 37 0 267 0 70 0 chr9 124212485 124212528 -18058916 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 2134 122 0 0 chr9 124212532 124212811 -18058633 + AluSx SINE Alu 24 302 -10 377 127 18 0 chr9 124212862 124212917 -18058527 - L2 LINE L2 -3 3310 3255 185 283 57 0 chr9 124212923 124212976 -18058468 - L2 LINE L2 -219 3053 2998 808 156 8 0 chr9 124213447 124213575 -18057869 + AluJb SINE Alu 1 129 -183 215 200 18 18 chr9 124213876 124213931 -18057513 + L2 LINE L2 2635 2689 -625 183 364 40 0 chr9 124214395 124214494 -18056950 + MIR SINE MIR 47 149 -113 2179 124 0 9 chr9 124214779 124215094 -18056350 - AluSx SINE Alu 0 312 1 406 303 23 63 chr9 124215361 124215536 -18055908 - MIR SINE MIR -50 212 45 1084 134 17 39 chr9 124216051 124216230 -18055214 - AluJo SINE Alu -20 292 118 2313 105 10 0 chr9 124216265 124216570 -18054874 - AluSq SINE Alu -5 308 1 280 229 0 29 chr9 124217170 124217240 -18054204 - MER112 DNA MER1_type -176 84 17 236 273 122 44 chr9 124217368 124217639 -18053805 - L2 LINE L2 -799 2515 2224 1729 148 71 20 chr9 124217663 124217960 -18053484 - AluJb SINE Alu 0 312 1 2006 133 0 0 chr9 124218440 124218788 -18052656 - AluSc SINE Alu 0 348 1 554 304 177 27 chr9 124218806 124219178 -18052266 + L2 LINE L2 2182 2609 -705 1313 159 5 5 chr9 124219239 124219434 -18052010 + AluJo SINE Alu 5 199 -113 2212 102 10 0 chr9 124219491 124219785 -18051659 + AluSp SINE Alu 1 297 -16 25 0 0 0 chr9 124219829 124219854 -18051590 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr9 124220309 124220345 -18051099 + AT_rich Low_complexity Low_complexity 1 36 0 269 299 82 10 chr9 124220481 124220578 -18050866 + L2 LINE L2 3152 3255 -17 456 300 42 0 chr9 124220668 124220788 -18050656 + MIR SINE MIR 127 251 -11 2357 108 0 3 chr9 124221162 124221476 -18049968 - AluSq SINE Alu 0 313 1 710 261 145 5 chr9 124221596 124221803 -18049641 + MIR SINE MIR 21 256 -6 327 319 148 0 chr9 124221816 124221951 -18049493 + MIR SINE MIR 76 230 -32 2272 122 3 0 chr9 124223387 124223698 -18047746 + AluSx SINE Alu 1 312 0 2189 104 44 0 chr9 124224721 124225019 -18046425 + AluY SINE Alu 1 311 0 2427 107 0 0 chr9 124226337 124226645 -18044799 - AluSg SINE Alu -1 309 2 5527 123 33 10 chr9 124226691 124227562 -18043882 + L1MC1 LINE L1 5438 6328 -5 21 36 0 0 chr9 124227566 124227594 -18043850 + AT_rich Low_complexity Low_complexity 1 28 0 1876 131 30 34 chr9 124231370 124231668 -18039776 - AluJb SINE Alu -15 297 1 185 236 0 0 chr9 124231993 124232038 -18039406 - MIR SINE MIR -63 145 106 534 146 29 48 chr9 124232117 124232220 -18039224 - FRAM SINE Alu -15 161 61 1848 159 17 3 chr9 124232597 124232886 -18038558 + AluJb SINE Alu 1 293 -19 183 266 16 31 chr9 124233367 124233431 -18038013 - MIR SINE MIR -192 70 8 234 0 0 0 chr9 124233468 124233494 -18037950 + (CA)n Simple_repeat Simple_repeat 2 27 0 272 267 0 0 chr9 124234067 124234127 -18037317 + MLT1K LTR MaLR 172 231 -357 456 274 20 35 chr9 124234202 124234403 -18037041 + MLT1K LTR MaLR 369 566 -22 267 301 65 24 chr9 124234422 124234545 -18036899 + L2 LINE L2 3186 3313 0 537 163 14 95 chr9 124234820 124234967 -18036477 + MER20 DNA MER1_type 1 135 -84 1223 157 4 61 chr9 124234967 124235197 -18036247 + AluJo SINE Alu 86 302 -10 2144 109 0 28 chr9 124235199 124235520 -18035924 + AluSx SINE Alu 1 312 0 279 167 0 0 chr9 124235526 124235574 -18035870 + MER20 DNA MER1_type 161 208 -11 771 205 31 113 chr9 124236045 124236274 -18035170 - MER63A DNA MER1_type 0 210 1 743 208 40 29 chr9 124237203 124237376 -18034068 - MER5B DNA MER1_type -3 175 1 350 230 43 72 chr9 124237386 124237525 -18033919 - L1MDa LINE L1 -4836 1704 1570 1910 175 46 2 chr9 124237528 124237939 -18033505 + L1 LINE L1 4207 4635 -1511 180 0 0 0 chr9 124237949 124237969 -18033475 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 316 273 55 30 chr9 124238046 124238211 -18033233 + L1ME2 LINE L1 5996 6164 0 1503 221 29 5 chr9 124238242 124238626 -18032818 - L1P LINE L1 -790 5356 4964 188 83 0 28 chr9 124238637 124238673 -18032771 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6674 54 4 0 chr9 124238673 124239960 -18031484 - L1PA6 LINE L1 -24 6130 4840 454 289 75 36 chr9 124239981 124240234 -18031210 - LTR33A LTR ERVL -6 517 255 562 248 83 87 chr9 124240702 124241149 -18030295 - MER65A LTR ERV1 0 445 1 1493 299 69 29 chr9 124241175 124242611 -18028833 - ERVL LTR ERVL -286 5478 3894 318 252 48 10 chr9 124242610 124242713 -18028731 - ERVL LTR ERVL -2236 3528 3422 * 1554 310 78 13 chr9 124242821 124243919 -18027525 - ERVL LTR ERVL -2352 3133 1987 429 312 25 0 chr9 124243965 124244122 -18027322 - ERVL LTR ERVL -3904 1860 1700 497 298 99 28 chr9 124244277 124244670 -18026774 - ERVL LTR ERVL -4458 1306 886 265 293 69 0 chr9 124244760 124244889 -18026555 - ERVL LTR ERVL -4979 687 537 346 207 63 75 chr9 124245523 124245697 -18025747 + MLT1H LTR MaLR 376 547 -2 451 198 216 6 chr9 124245722 124245884 -18025560 - LTR33A LTR ERVL 0 523 328 326 257 0 0 chr9 124246027 124246101 -18025343 + MIR SINE MIR 189 262 0 8182 55 1 2 chr9 124246136 124247099 -18024345 - LTR5 LTR ERVK -3 966 5 1188 162 192 43 chr9 124247128 124247498 -18023946 - MSTC LTR MaLR -3 425 1 5718 186 149 35 chr9 124247618 124250048 -18021396 - L1MA4 LINE L1 -5 6477 3732 3972 217 24 15 chr9 124250023 124250332 -18021112 - L1MA4 LINE L1 -4390 938 633 * 2570 143 21 21 chr9 124250332 124250764 -18020680 + MSTB1 LTR MaLR 1 432 0 3972 217 24 15 chr9 124250764 124251371 -18020073 - L1MA4 LINE L1 -4695 633 14 476 280 62 36 chr9 124251583 124251776 -18019668 - MLT1I LTR MaLR -42 367 170 2348 196 28 2 chr9 124252435 124252944 -18018500 - L1ME1 LINE L1 -235 5931 5410 15317 134 15 17 chr9 124252952 124254918 -18016526 + L1M1 LINE L1 914 2882 -4683 2209 117 13 0 chr9 124254918 124255226 -18016218 + AluSx SINE Alu 1 312 0 15317 134 15 17 chr9 124255226 124255752 -18015692 + L1M1 LINE L1 2882 3407 -4158 1829 103 0 0 chr9 124255752 124255984 -18015460 + AluSx SINE Alu 36 267 -45 210 71 0 0 chr9 124255984 124256012 -18015432 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 15317 134 15 17 chr9 124256012 124256129 -18015315 + L1M1 LINE L1 3405 3520 -4045 * 24478 34 2 0 chr9 124256120 124259248 -18012196 + L1P LINE L1 1156 4288 -1858 18834 37 1 2 chr9 124259348 124262438 -18009006 + L1PA3 LINE L1 3066 6152 -3 24 0 0 0 chr9 124262858 124262882 -18008562 + AT_rich Low_complexity Low_complexity 1 24 0 326 237 0 54 chr9 124262990 124263083 -18008361 - L1MC4 LINE L1 -1341 6701 6614 316 276 35 0 chr9 124263006 124263093 -18008351 + L1MC4 LINE L1 6614 6703 -1339 * 198 0 0 0 chr9 124263155 124263177 -18008267 + (TA)n Simple_repeat Simple_repeat 2 23 0 1941 155 0 0 chr9 124263491 124263775 -18007669 + AluJb SINE Alu 1 284 -28 1924 156 0 17 chr9 124264001 124264303 -18007141 + AluJo SINE Alu 1 297 -15 1913 123 0 4 chr9 124264303 124264563 -18006881 + AluSx SINE Alu 15 273 -39 535 134 17 0 chr9 124264566 124264685 -18006759 + GA-rich Low_complexity Low_complexity 1 121 0 870 83 0 0 chr9 124264688 124264808 -18006636 + (GAAA)n Simple_repeat Simple_repeat 1 120 0 1509 230 93 54 chr9 124264963 124265459 -18005985 + MLT1E LTR MaLR 1 515 -78 247 253 50 50 chr9 124265629 124265728 -18005716 + L1MDb LINE L1 666 764 -5645 511 278 28 11 chr9 124265791 124265967 -18005477 + L1MDb LINE L1 681 859 -5550 2050 171 118 54 chr9 124265969 124266026 -18005418 - MLT2B2 LTR ERVL 0 515 463 1503 193 75 3 chr9 124266026 124266347 -18005097 - MER2 DNA MER2_type 0 344 1 216 0 0 0 chr9 124266351 124266375 -18005069 + (TG)n Simple_repeat Simple_repeat 2 25 0 2050 171 118 54 chr9 124266375 124266796 -18004648 - MLT2B2 LTR ERVL -54 461 1 6624 146 48 59 chr9 124266801 124268235 -18003209 + L1MC3 LINE L1 5908 7326 -459 234 170 21 0 chr9 124268235 124268282 -18003162 + MLT1C LTR MaLR 1 48 -419 3840 84 4 109 chr9 124268292 124268995 -18002449 - MER4A LTR ERV1 -33 631 3 452 127 0 0 chr9 124269005 124269076 -18002368 - MER4A-int LTR ERV1 -2 6596 6526 1665 184 60 23 chr9 124269077 124269463 -18001981 + MLT1C LTR MaLR 52 451 -16 2248 141 27 29 chr9 124269479 124269926 -18001518 + L1MC3 LINE L1 7322 7767 -18 248 193 169 48 chr9 124269927 124270010 -18001434 - MER58 DNA MER1_type -121 94 2 1034 107 9 37 chr9 124270560 124270775 -18000669 - L1MDa LINE L1 -4007 2533 2325 237 108 0 0 chr9 124270795 124270832 -18000612 + (T)n Simple_repeat Simple_repeat 1 37 0 354 279 56 6 chr9 124270849 124271028 -18000416 - L1M4 LINE L1 -2157 3989 3802 2402 192 141 55 chr9 124271042 124271642 -17999802 + L1MD2 LINE L1 5456 6148 -211 2137 113 7 3 chr9 124271642 124271934 -17999510 - AluSx SINE Alu -19 293 1 2402 192 141 55 chr9 124271934 124272165 -17999279 + L1MD2 LINE L1 6148 6358 -1 656 208 131 54 chr9 124272172 124272432 -17999012 + L2 LINE L2 3034 3313 0 1917 169 0 13 chr9 124272497 124272799 -17998645 + AluJo SINE Alu 1 298 -14 282 254 76 30 chr9 124272882 124273118 -17998326 + L1M4 LINE L1 3199 3445 -2701 1065 186 36 85 chr9 124273128 124273287 -17998157 + L1M4 LINE L1 4945 5110 -1036 642 244 69 6 chr9 124273287 124273447 -17997997 - FAM SINE Alu -5 170 1 1065 186 36 85 chr9 124273447 124273652 -17997792 + L1M4 LINE L1 5110 5291 -855 8022 175 17 13 chr9 124273653 124273767 -17997677 - L1P4 LINE L1 -585 5581 5469 1541 116 132 4 chr9 124273767 124274047 -17997397 + AluSg1 SINE Alu 1 312 0 8022 175 17 13 chr9 124274047 124275938 -17995506 - L1P4 LINE L1 -697 5469 3565 575 285 128 22 chr9 124275935 124276475 -17994969 + L1M4 LINE L1 3857 4453 -1693 * 712 273 28 35 chr9 124276513 124276942 -17994502 + L1M4 LINE L1 4527 4952 -1194 393 238 25 57 chr9 124276947 124277069 -17994375 + L2 LINE L2 3183 3300 -13 303 93 0 0 chr9 124277073 124277116 -17994328 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 601 217 0 50 chr9 124277795 124277915 -17993529 - MER81 DNA DNA 0 114 1 773 292 89 38 chr9 124278791 124279405 -17992039 + ERVL LTR ERVL 2973 3642 -2012 5196 115 29 82 chr9 124279406 124279730 -17991714 + L1MA5A LINE L1 4591 4931 -1366 1617 167 7 44 chr9 124279730 124280064 -17991380 + AluJo SINE Alu 1 323 0 5196 115 29 82 chr9 124280064 124281014 -17990430 + L1MA5A LINE L1 4931 5792 -505 241 158 18 0 chr9 124281014 124281071 -17990373 - LTR66 LTR ERVL -171 439 382 5196 115 29 82 chr9 124281071 124281547 -17989897 + L1MA5A LINE L1 5792 6292 -5 32 0 0 0 chr9 124281549 124281581 -17989863 + AT_rich Low_complexity Low_complexity 1 32 0 2836 303 57 6 chr9 124281628 124282663 -17988781 + ERVL LTR ERVL 3740 4827 -937 825 277 126 33 chr9 124282722 124283206 -17988238 + ERVL LTR ERVL 4945 5473 -291 2052 151 0 0 chr9 124283373 124283684 -17987760 - AluSx SINE Alu -1 311 1 479 207 66 0 chr9 124283816 124283937 -17987507 + LTR50 LTR ERVL 1 129 -666 616 191 167 91 chr9 124283995 124284349 -17987095 + LTR50 LTR ERVL 333 795 0 391 325 7 0 chr9 124284350 124284501 -17986943 + ERVL LTR ERVL 5245 5396 -368 855 265 145 40 chr9 124284827 124285283 -17986161 + LTR33A LTR ERVL 4 507 -16 426 210 215 43 chr9 124285357 124285590 -17985854 + L1MC4a LINE L1 5629 5901 -1907 437 282 52 6 chr9 124285806 124285980 -17985464 - HERVL LTR ERVL -288 5366 5185 297 330 22 28 chr9 124286130 124286309 -17985135 - HERVL LTR ERVL -1213 4551 4374 2282 99 0 3 chr9 124286310 124286604 -17984840 + AluSx SINE Alu 1 293 -19 636 212 229 14 chr9 124286618 124286906 -17984538 + HAL1 LINE L1 3 352 -2155 336 206 0 0 chr9 124286921 124286989 -17984455 + MLT1F1 LTR MaLR 64 131 -436 2742 156 40 16 chr9 124286998 124287551 -17983893 + L1MD3 LINE L1 6088 6241 -1 1662 208 10 13 chr9 124287667 124287980 -17983464 + AluJb SINE Alu 1 312 0 1615 253 85 40 chr9 124288054 124288290 -17983154 + Zaphod DNA AcHobo 1 225 -3806 2278 105 26 0 chr9 124288290 124288594 -17982850 + AluSx SINE Alu 1 312 0 1615 253 85 40 chr9 124288594 124288934 -17982510 + Zaphod DNA AcHobo 225 603 -3428 1359 211 13 30 chr9 124288939 124289147 -17982297 - AluJo SINE Alu -13 299 96 4253 93 14 26 chr9 124289147 124289508 -17981936 + MER41B LTR ERV1 1 352 -283 2335 113 0 0 chr9 124289508 124289817 -17981627 + AluSg SINE Alu 1 309 -1 4253 93 14 26 chr9 124289817 124290098 -17981346 + MER41B LTR ERV1 352 635 0 1359 211 13 30 chr9 124290098 124290193 -17981251 - AluJo SINE Alu -216 96 1 370 173 100 7 chr9 124290291 124290441 -17981003 + Zaphod DNA AcHobo 656 819 -3212 5041 132 57 24 chr9 124290446 124291320 -17980124 + MER4D LTR ERV1 1 903 0 1978 135 42 0 chr9 124291868 124292156 -17979288 - AluSx SINE Alu -12 300 1 1338 193 0 0 chr9 124292627 124292865 -17978579 + AluSg1 SINE Alu 1 238 -71 401 211 24 56 chr9 124293069 124293273 -17978171 + L1MC4 LINE L1 7036 7237 -724 313 370 7 15 chr9 124293673 124293808 -17977636 - MER5B DNA MER1_type -20 158 25 206 318 53 60 chr9 124293680 124293831 -17977613 + MER5A DNA MER1_type 39 188 -1 * 2116 84 0 7 chr9 124293949 124294255 -17977189 - AluY SINE Alu 0 304 1 886 303 90 16 chr9 124294257 124294636 -17976808 + MLT1I LTR MaLR 1 407 -2 631 268 170 5 chr9 124294846 124295070 -17976374 - MIR SINE MIR 0 262 2 413 327 53 0 chr9 124295075 124295225 -17976219 + MIR SINE MIR 81 238 -24 2194 117 0 16 chr9 124295497 124295813 -17975631 - AluSx SINE Alu -1 311 1 4050 152 36 22 chr9 124296240 124296328 -17975116 - L1MC1 LINE L1 -5 6328 6243 330 87 0 0 chr9 124296328 124296374 -17975070 + (CA)n Simple_repeat Simple_repeat 1 46 0 4050 152 36 22 chr9 124296374 124296771 -17974673 - L1MC1 LINE L1 -90 6243 5827 2125 135 3 3 chr9 124296771 124297083 -17974361 - AluJb SINE Alu 0 312 1 4050 152 36 22 chr9 124297083 124297355 -17974089 - L1MC1 LINE L1 -506 5827 5560 238 133 22 0 chr9 124297357 124297402 -17974042 - L1MC/D LINE L1 -637 5605 5560 660 164 42 32 chr9 124297402 124297640 -17973804 - Ricksha DNA DNA -13 3238 3057 269 89 22 0 chr9 124297639 124297684 -17973760 - Ricksha DNA DNA -1127 54 9 * 1059 209 29 16 chr9 124297698 124298541 -17972903 - L1MC/D LINE L1 -780 5564 4734 2455 69 0 0 chr9 124298541 124298846 -17972598 + AluY SINE Alu 1 305 -6 1059 209 29 16 chr9 124298846 124300038 -17971406 - L1MC/D LINE L1 -1610 4734 3444 183 213 106 0 chr9 124300809 124300856 -17970588 + MIR SINE MIR 81 132 -130 629 209 20 25 chr9 124301169 124301370 -17970074 + L1MA4 LINE L1 6096 6295 -5 1978 147 16 95 chr9 124301536 124301959 -17969485 + MLT1B LTR MaLR 1 390 0 612 219 0 8 chr9 124301972 124302091 -17969353 + L2 LINE L2 3190 3307 -6 2170 104 0 0 chr9 124302757 124303037 -17968407 + AluY SINE Alu 1 280 -31 2225 119 3 3 chr9 124303241 124303551 -17967893 - AluSx SINE Alu -2 310 1 383 120 98 43 chr9 124304618 124304710 -17966734 + L1MD2 LINE L1 6043 6139 -220 623 204 41 0 chr9 124304712 124304859 -17966585 + L1MD2 LINE L1 6195 6347 -12 271 261 165 112 chr9 124304991 124305313 -17966131 + L2 LINE L2 2932 3270 -2 3534 129 14 12 chr9 124305313 124305896 -17965548 + MER49 LTR ERV1 28 611 -312 909 184 0 17 chr9 124305920 124306094 -17965350 - AluJo SINE Alu -54 258 88 1694 130 32 0 chr9 124306099 124306376 -17965068 + MER49 LTR ERV1 605 890 -33 2181 75 58 0 chr9 124306378 124306670 -17964774 - AluSx SINE Alu -3 309 1 2179 84 31 0 chr9 124308590 124308876 -17962568 - AluSq SINE Alu -14 299 5 381 270 58 15 chr9 124308882 124309019 -17962425 - MIR SINE MIR -45 217 75 370 285 39 8 chr9 124309455 124309585 -17961859 - MIR SINE MIR -15 247 114 228 239 177 102 chr9 124310329 124310455 -17960989 + L2 LINE L2 3066 3181 -132 1703 149 65 0 chr9 124310455 124310730 -17960714 - AluJo SINE Alu -19 293 1 228 239 177 102 chr9 124310730 124310829 -17960615 + L2 LINE L2 3181 3308 -5 411 285 108 0 chr9 124311710 124311840 -17959604 - MIR SINE MIR 0 262 119 680 222 94 11 chr9 124312442 124312622 -17958822 - MIR SINE MIR -5 257 63 214 266 7 65 chr9 124313376 124313515 -17957929 + CT-rich Low_complexity Low_complexity 4 134 0 1144 214 95 3 chr9 124313806 124314101 -17957343 + MER58B DNA MER1_type 17 338 -3 197 274 75 57 chr9 124314800 124314906 -17956538 + MIR SINE MIR 153 260 -2 1457 130 14 0 chr9 124315545 124315760 -17955684 + MER1B DNA MER1_type 122 339 0 2466 75 0 0 chr9 124315851 124316157 -17955287 + AluY SINE Alu 1 306 -5 260 327 162 16 chr9 124316983 124317138 -17954306 - MIR SINE MIR -56 206 33 27 49 0 0 chr9 124317174 124317215 -17954229 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr9 124317231 124317256 -17954188 + AT_rich Low_complexity Low_complexity 1 25 0 356 211 147 21 chr9 124317368 124317463 -17953981 - L2 LINE L2 -17 3296 3190 625 243 124 20 chr9 124317776 124317978 -17953466 + MIR SINE MIR 22 244 -18 1367 214 123 85 chr9 124318501 124319074 -17952370 + HAL1 LINE L1 1704 2254 -253 1593 145 72 35 chr9 124319074 124319364 -17952080 - AluJo SINE Alu -10 302 2 1367 214 123 85 chr9 124319364 124319385 -17952059 + HAL1 LINE L1 2254 2273 -234 857 112 8 30 chr9 124319385 124319519 -17951925 - FLAM_C SINE Alu -1 132 2 1367 214 123 85 chr9 124319519 124319684 -17951760 + HAL1 LINE L1 2273 2493 -14 42 30 0 15 chr9 124319764 124319802 -17951642 + AT_rich Low_complexity Low_complexity 1 39 -27 2024 138 7 0 chr9 124319802 124320100 -17951344 + AluSx SINE Alu 1 300 -12 42 30 0 15 chr9 124320100 124320128 -17951316 + AT_rich Low_complexity Low_complexity 39 66 0 343 294 68 0 chr9 124320275 124320421 -17951023 + L1ME4a LINE L1 5654 5809 -312 2211 129 7 0 chr9 124320529 124320839 -17950605 - AluSx SINE Alu 0 312 1 454 355 71 0 chr9 124321008 124321163 -17950281 + L2 LINE L2 3102 3267 -5 293 313 42 0 chr9 124321217 124321313 -17950131 + MIR SINE MIR 151 250 -12 660 249 149 27 chr9 124321749 124321970 -17949474 + MIR SINE MIR 15 262 0 1105 52 0 0 chr9 124322135 124322270 -17949174 - AluSg/x SINE Alu -13 297 163 189 0 0 0 chr9 124322270 124322291 -17949153 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1847 103 107 0 chr9 124322291 124322562 -17948882 - AluSq SINE Alu -13 300 1 273 206 215 9 chr9 124322582 124322689 -17948755 + L1ME4a LINE L1 5993 6121 0 926 199 0 33 chr9 124322984 124323165 -17948279 - FRAM SINE Alu 0 40 1 596 325 81 83 chr9 124323409 124323867 -17947577 - L2 LINE L2 -2 3270 2814 25 0 0 0 chr9 124324398 124324423 -17947021 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr9 124324423 124324446 -17946998 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1996 113 14 7 chr9 124324451 124324726 -17946718 - AluSx SINE Alu -35 277 1 750 239 102 31 chr9 124324726 124324952 -17946492 + MIR SINE MIR 21 262 0 433 251 95 43 chr9 124324953 124325184 -17946260 - MER2 DNA MER2_type 0 345 103 1173 216 84 0 chr9 124325191 124325464 -17945980 - MER2 DNA MER2_type -48 297 2 211 333 115 21 chr9 124325775 124325871 -17945573 - MIR3 SINE MIR -92 116 12 400 344 16 21 chr9 124326801 124326993 -17944451 - MIR SINE MIR -56 206 16 272 348 196 0 chr9 124327035 124327147 -17944297 - L2 LINE L2 -18 3254 3121 182 365 16 0 chr9 124327177 124327240 -17944204 - L2 LINE L2 -189 3083 3020 473 233 0 0 chr9 124327282 124327368 -17944076 - FRAM/FAM SINE Alu -91 85 1 523 190 58 22 chr9 124327467 124327604 -17943840 - MIR SINE MIR -21 241 100 251 288 54 18 chr9 124327933 124328044 -17943400 + L2 LINE L2 3199 3313 0 31 26 0 0 chr9 124328055 124328093 -17943351 + AT_rich Low_complexity Low_complexity 1 38 0 335 283 16 96 chr9 124328893 124329007 -17942437 - MIR SINE MIR -65 143 90 709 223 161 0 chr9 124329007 124329200 -17942244 + MER58A DNA MER1_type 1 224 0 335 283 16 96 chr9 124329200 124329259 -17942185 - MIR SINE MIR -118 90 28 23 0 0 0 chr9 124329568 124329591 -17941853 + AT_rich Low_complexity Low_complexity 1 23 0 286 222 77 43 chr9 124329751 124329868 -17941576 - L1MC4a LINE L1 -1874 5934 5814 229 294 0 62 chr9 124329970 124330116 -17941328 + T-rich Low_complexity Low_complexity 1 137 0 231 182 45 0 chr9 124331034 124331078 -17940366 - MIR3 SINE MIR -12 196 151 418 303 72 0 chr9 124331080 124331232 -17940212 - MER117 DNA MER1_type -4 193 31 2113 118 3 13 chr9 124331251 124331556 -17939888 + AluSx SINE Alu 1 302 -10 39 38 0 0 chr9 124331532 124331585 -17939859 + AT_rich Low_complexity Low_complexity 1 53 0 328 314 83 0 chr9 124331597 124331718 -17939726 - MIR SINE MIR -55 153 23 1364 257 105 9 chr9 124332125 124332584 -17938860 + L1ME3A LINE L1 5406 5908 -262 235 347 179 7 chr9 124333642 124333927 -17937517 + L2 LINE L2 2643 2976 -338 237 327 137 33 chr9 124334057 124334210 -17937234 + L2 LINE L2 3104 3272 0 437 320 66 11 chr9 124334481 124334662 -17936782 - MIR SINE MIR -51 211 21 2084 218 166 21 chr9 124334674 124335157 -17936287 - Charlie2 DNA MER1_type -1 2861 2449 2149 112 20 10 chr9 124335157 124335451 -17935993 - AluSx SINE Alu -13 299 3 2084 218 166 21 chr9 124335451 124335858 -17935586 - Charlie2 DNA MER1_type -413 2449 1842 625 243 93 33 chr9 124335865 124336079 -17935365 - Charlie2 DNA MER1_type -2555 227 1 2320 87 0 42 chr9 124336773 124337084 -17934360 - AluSq SINE Alu -13 300 3 26 30 0 0 chr9 124337422 124337455 -17933989 + AT_rich Low_complexity Low_complexity 1 33 0 457 259 77 18 chr9 124338939 124339109 -17932335 - MIR SINE MIR -58 204 25 2483 73 0 22 chr9 124339328 124339641 -17931803 - AluSx SINE Alu -6 306 1 304 210 74 0 chr9 124340171 124340252 -17931192 + MIR SINE MIR 70 151 -57 415 310 108 38 chr9 124340968 124341284 -17930160 + MLT1L LTR MaLR 16 353 -262 248 326 16 16 chr9 124341368 124341497 -17929947 + MLT1L LTR MaLR 487 615 0 717 221 169 9 chr9 124341572 124341785 -17929659 - MIR SINE MIR -12 250 4 203 278 21 62 chr9 124341792 124341889 -17929555 - MIR SINE MIR -98 164 72 217 320 0 62 chr9 124342626 124342723 -17928721 + MER5B DNA MER1_type 86 176 -2 462 18 0 0 chr9 124342730 124342785 -17928659 + (CA)n Simple_repeat Simple_repeat 2 56 0 365 337 122 15 chr9 124343273 124343469 -17927975 + LTR16B LTR ERVL 1 217 -247 2107 191 51 12 chr9 124343486 124343978 -17927466 + L1MB4 LINE L1 5670 6180 0 2009 115 10 14 chr9 124344189 124344485 -17926959 - AluSx SINE Alu -17 295 1 180 0 0 0 chr9 124344848 124344868 -17926576 + (CA)n Simple_repeat Simple_repeat 2 21 0 1999 166 0 7 chr9 124345489 124345796 -17925648 - AluJo SINE Alu -7 305 1 549 227 141 89 chr9 124346329 124346642 -17924802 + MER102a DNA MER1_type 1 329 -1 254 254 0 0 chr9 124346718 124346773 -17924671 - L2 LINE L2 0 3313 3259 2230 126 0 7 chr9 124346975 124347277 -17924167 - AluSx SINE Alu -12 300 1 383 288 48 8 chr9 124347297 124347422 -17924022 + L2 LINE L2 3139 3268 -4 434 254 25 33 chr9 124347649 124347771 -17923673 + L2 LINE L2 3193 3313 0 255 239 12 0 chr9 124348045 124348115 -17923329 - MIR SINE MIR -61 147 97 495 339 48 0 chr9 124348920 124349085 -17922359 - MIR SINE MIR -81 181 9 879 194 0 52 chr9 124349094 124349285 -17922159 - MER3 DNA MER1_type -28 181 1 253 360 122 7 chr9 124349300 124349447 -17921997 + L3b LINE CR1 1293 1456 -127 2340 95 7 10 chr9 124349570 124349876 -17921568 - AluSp SINE Alu -6 307 3 491 329 59 14 chr9 124350411 124350630 -17920814 + L3 LINE CR1 908 1136 -441 285 302 139 0 chr9 124351683 124351812 -17919632 + MIR SINE MIR 50 196 -66 291 310 114 19 chr9 124351990 124352285 -17919159 + L2 LINE L2 2685 3035 -237 877 197 101 0 chr9 124352364 124352572 -17918872 - MIR SINE MIR -20 242 14 307 269 108 42 chr9 124352616 124352783 -17918661 + L2 LINE L2 3136 3313 0 390 159 0 0 chr9 124352783 124352852 -17918592 + (TGGA)n Simple_repeat Simple_repeat 2 70 0 255 369 15 15 chr9 124353451 124353581 -17917863 + HAL1b LINE L1 1206 1335 -13 1583 174 25 74 chr9 124353724 124353900 -17917544 + L1MD3 LINE L1 7609 7792 -203 1840 134 7 39 chr9 124353900 124354206 -17917238 + AluSx SINE Alu 1 296 -16 1583 174 25 74 chr9 124354206 124354436 -17917008 + L1MD3 LINE L1 7792 7995 0 1742 150 17 17 chr9 124354452 124354745 -17916699 + AluSx SINE Alu 6 298 -14 2469 248 45 21 chr9 124354782 124355529 -17915915 + L1MC4a LINE L1 5404 6168 -1640 2215 100 3 20 chr9 124355535 124355862 -17915582 + AluSq SINE Alu 1 313 0 209 315 11 22 chr9 124356424 124356513 -17914931 - MIR SINE MIR -83 125 38 657 267 38 9 chr9 124356604 124356814 -17914630 + MIR SINE MIR 35 250 -12 220 259 17 0 chr9 124356824 124356882 -17914562 + (TTA)n Simple_repeat Simple_repeat 2 60 0 2390 95 0 13 chr9 124356898 124357215 -17914229 - AluSq SINE Alu 0 313 1 365 234 19 15 chr9 124357394 124357521 -17913923 - MIR SINE MIR -5 203 77 227 355 32 13 chr9 124357689 124357844 -17913600 + L2 LINE L2 2518 2675 -639 22 35 0 0 chr9 124357853 124357882 -17913562 + AT_rich Low_complexity Low_complexity 1 29 0 931 111 0 15 chr9 124357955 124358090 -17913354 + FLAM_C SINE Alu 1 133 0 245 337 101 24 chr9 124359393 124359562 -17911882 - MIR SINE MIR -12 250 69 262 238 12 38 chr9 124359707 124359787 -17911657 + CT-rich Low_complexity Low_complexity 5 82 0 385 296 0 26 chr9 124360135 124360250 -17911194 - MIR SINE MIR -63 145 34 1973 166 0 6 chr9 124360804 124361118 -17910326 + AluJo SINE Alu 1 312 0 1253 131 111 8 chr9 124361121 124361375 -17910069 + L1MD3 LINE L1 7613 7987 -8 291 182 36 0 chr9 124361409 124361464 -17909980 + L1ME4a LINE L1 5467 5523 -2285 725 182 93 81 chr9 124361534 124361783 -17909661 - MIR SINE MIR 0 262 21 2138 106 19 16 chr9 124361783 124362095 -17909349 - AluSq SINE Alu 0 313 1 373 230 174 11 chr9 124362132 124362310 -17909134 + L1ME4a LINE L1 5612 5818 -1990 2120 132 3 0 chr9 124362415 124362711 -17908733 + AluJb SINE Alu 1 297 -15 248 152 114 0 chr9 124362873 124362952 -17908492 + L1ME4a LINE L1 6034 6121 0 274 275 33 50 chr9 124363205 124363325 -17908119 - MIR SINE MIR -36 226 109 223 185 185 65 chr9 124363421 124363513 -17907931 - MIR SINE MIR -76 132 30 494 295 58 12 chr9 124363969 124364142 -17907302 - MIR SINE MIR -71 191 11 1875 157 3 29 chr9 124364655 124364968 -17906476 + AluJo SINE Alu 7 311 -1 2616 229 39 8 chr9 124365502 124366113 -17905331 + L1ME3A LINE L1 5536 6165 -5 259 274 0 0 chr9 124367069 124367142 -17904302 - MIR SINE MIR -124 138 66 404 282 31 12 chr9 124367305 124367468 -17903976 - MER103 DNA DNA 0 166 1 564 184 20 14 chr9 124367471 124367618 -17903826 + CT-rich Low_complexity Low_complexity 1 148 0 1180 213 121 0 chr9 124367619 124367764 -17903680 - AluJo SINE Alu -33 279 153 180 0 0 0 chr9 124367764 124367784 -17903660 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 1180 213 121 0 chr9 124367784 124367887 -17903557 - AluJo SINE Alu -159 153 1 254 306 12 12 chr9 124368108 124368193 -17903251 + MIR SINE MIR 64 148 -114 536 253 92 17 chr9 124368352 124368526 -17902918 - MIR3 SINE MIR -7 201 15 272 297 159 28 chr9 124368748 124368893 -17902551 - MIR SINE MIR -79 183 20 2002 131 0 0 chr9 124368910 124369178 -17902266 - AluSx SINE Alu -39 273 6 383 281 101 23 chr9 124369895 124370073 -17901371 - MIR SINE MIR -39 223 33 2360 105 0 0 chr9 124370387 124370682 -17900762 - AluSx SINE Alu -17 295 1 350 290 102 45 chr9 124371007 124371183 -17900261 + L1ME4a LINE L1 5933 6118 -3 741 234 78 5 chr9 124372039 124372231 -17899213 + MIR SINE MIR 47 252 -10 519 261 49 0 chr9 124372243 124372385 -17899059 + MIR SINE MIR 70 218 -44 185 286 103 40 chr9 124372589 124372764 -17898680 + L2 LINE L2 3047 3232 -40 364 202 55 37 chr9 124372788 124372897 -17898547 + MIR SINE MIR 91 201 -61 202 71 0 0 chr9 124372955 124372983 -17898461 + L2 LINE L2 3243 3270 -2 291 306 10 0 chr9 124373420 124373518 -17897926 - MIR SINE MIR -60 148 50 555 251 53 32 chr9 124373547 124373734 -17897710 + MIR3 SINE MIR 10 200 -8 242 284 43 17 chr9 124373846 124373962 -17897482 - MIR SINE MIR -77 185 67 466 261 39 26 chr9 124374254 124374407 -17897037 - MIR SINE MIR -87 175 21 329 253 20 60 chr9 124374747 124374897 -17896547 + MIR3 SINE MIR 58 201 -7 245 287 123 6 chr9 124374937 124375045 -17896399 - MIR SINE MIR -64 144 37 372 275 152 23 chr9 124375103 124375274 -17896170 - MIR SINE MIR -41 221 29 2422 103 3 0 chr9 124375925 124376236 -17895208 - AluSx SINE Alu 0 312 1 262 314 48 0 chr9 124376242 124376347 -17895097 - MIR SINE MIR -107 155 46 353 202 50 20 chr9 124376464 124376563 -17894881 - MIR3 SINE MIR -31 177 76 286 337 6 22 chr9 124377173 124377351 -17894093 + GA-rich Low_complexity Low_complexity 5 179 0 22 103 0 0 chr9 124377551 124377629 -17893815 + GC_rich Low_complexity Low_complexity 1 78 0 219 154 209 0 chr9 124378150 124378216 -17893228 - MIR SINE MIR -55 153 71 366 237 69 86 chr9 124378461 124378706 -17892738 - HAL1 LINE L1 -87 2420 2180 282 330 121 9 chr9 124379165 124379389 -17892055 - L2 LINE L2 -173 3099 2851 515 253 121 46 chr9 124379610 124379978 -17891466 + L1MC4a LINE L1 5519 5830 -340 506 251 47 37 chr9 124380102 124380293 -17891151 + L1MB8 LINE L1 5972 6164 -14 529 265 14 20 chr9 124380899 124381046 -17890398 + MIR3 SINE MIR 34 179 -29 266 367 14 0 chr9 124381044 124381183 -17890261 + MIR3 SINE MIR 54 194 -14 * 293 240 135 10 chr9 124381257 124381353 -17890091 - MIR SINE MIR -134 128 21 250 187 91 0 chr9 124382344 124382410 -17889034 + MIR SINE MIR 113 183 -55 314 247 14 0 chr9 124382560 124382633 -17888811 + MIR SINE MIR 80 153 -109 318 260 87 39 chr9 124382715 124382842 -17888602 - MIR3 SINE MIR -46 162 30 190 277 46 0 chr9 124383434 124383499 -17887945 + L3 LINE CR1 1319 1386 -191 857 238 31 13 chr9 124383538 124383761 -17887683 + MIR SINE MIR 17 248 -14 295 210 32 0 chr9 124383790 124383852 -17887592 + MIR SINE MIR 90 153 -109 877 81 0 0 chr9 124383855 124383966 -17887478 - AluSx SINE Alu -8 304 194 1190 78 0 0 chr9 124383967 124384108 -17887336 - AluSx SINE Alu -172 141 1 184 284 40 0 chr9 124384604 124384678 -17886766 + MIR SINE MIR 131 207 -55 325 279 171 21 chr9 124384918 124385058 -17886386 + MIR SINE MIR 87 247 -15 2005 168 0 0 chr9 124385378 124385688 -17885756 + AluJo SINE Alu 1 310 -2 342 284 10 10 chr9 124385692 124385794 -17885650 + MIR SINE MIR 50 151 -111 2222 118 0 3 chr9 124385855 124386159 -17885285 + AluSx SINE Alu 1 303 -9 1043 126 5 68 chr9 124386186 124386408 -17885036 + MER2 DNA MER2_type 2 209 -136 42 36 0 0 chr9 124386475 124386531 -17884913 + AT_rich Low_complexity Low_complexity 1 56 0 757 126 0 55 chr9 124386613 124386740 -17884704 + AluJb SINE Alu 15 134 -178 255 213 27 27 chr9 124386765 124386840 -17884604 + L1MA9 LINE L1 6066 6140 -172 436 134 15 0 chr9 124386848 124386915 -17884529 - MADE1 DNA Mariner -8 72 5 381 212 9 26 chr9 124386915 124387028 -17884416 + L1MA9 LINE L1 6177 6287 -25 355 183 118 0 chr9 124387832 124387928 -17883516 + MIR SINE MIR 41 145 -74 201 74 0 0 chr9 124388388 124388415 -17883029 + (A)n Simple_repeat Simple_repeat 1 27 0 503 306 106 10 chr9 124388903 124389102 -17882342 + MIR SINE MIR 40 257 -5 200 284 147 0 chr9 124389210 124389305 -17882139 - MIR SINE MIR -77 185 77 1806 149 0 4 chr9 124389348 124389616 -17881828 + AluJo SINE Alu 1 267 -45 561 214 53 86 chr9 124389635 124389878 -17881566 + L1MB8 LINE L1 5950 6184 0 290 271 34 34 chr9 124390037 124390155 -17881289 + MER5A DNA MER1_type 21 138 -51 * 442 282 18 0 chr9 124390049 124390159 -17881285 - MER5A DNA MER1_type -19 170 59 251 307 72 46 chr9 124390172 124390325 -17881119 - MIR3 SINE MIR -50 158 2 426 273 124 19 chr9 124390622 124390783 -17880661 - MIR SINE MIR -49 213 36 196 297 221 30 chr9 124390897 124391160 -17880284 - L2 LINE L2 -94 3178 2866 300 284 20 20 chr9 124391742 124391844 -17879600 + MIR3 SINE MIR 68 169 -39 474 243 19 0 chr9 124391913 124392016 -17879428 + MIR3 SINE MIR 68 172 -36 22 35 0 0 chr9 124392016 124392045 -17879399 + AT_rich Low_complexity Low_complexity 1 29 0 221 222 93 0 chr9 124392082 124392136 -17879308 - L2 LINE L2 -38 3234 3176 502 267 128 20 chr9 124392358 124392553 -17878891 - MIR SINE MIR -30 232 17 180 331 36 43 chr9 124392718 124392857 -17878587 + L2 LINE L2 2640 2777 -537 187 294 189 22 chr9 124393374 124393602 -17877842 + L2 LINE L2 2709 2974 -340 396 40 0 0 chr9 124393854 124393904 -17877540 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 2328 119 0 0 chr9 124393978 124394288 -17877156 + AluSx SINE Alu 1 310 -2 312 306 14 69 chr9 124395679 124395823 -17875621 - MIR3 SINE MIR -67 141 6 1208 323 71 21 chr9 124396125 124396744 -17874700 - L3 LINE CR1 -8 1569 920 356 206 62 21 chr9 124396785 124396882 -17874562 + MIR SINE MIR 63 163 -99 441 318 58 7 chr9 124397104 124397258 -17874186 + L2 LINE L2 3111 3272 0 541 283 107 42 chr9 124398021 124398431 -17873013 + L2 LINE L2 2467 2903 -411 187 344 16 0 chr9 124398466 124398530 -17872914 + L2 LINE L2 3088 3152 -120 462 260 154 40 chr9 124399265 124399492 -17871952 - MIR SINE MIR -2 260 8 807 173 55 35 chr9 124399569 124399771 -17871673 - MER58C DNA MER1_type 0 215 10 200 371 48 29 chr9 124400003 124400108 -17871336 + MIR SINE MIR 27 133 -75 506 188 225 0 chr9 124400150 124400286 -17871158 + MER5A DNA MER1_type 4 175 -14 192 250 119 60 chr9 124400556 124400640 -17870804 - MIR SINE MIR -78 130 42 1438 46 0 0 chr9 124400643 124400818 -17870626 - L1PA5 LINE L1 0 6154 5980 280 350 10 10 chr9 124400911 124401014 -17870430 + MIR3 SINE MIR 78 180 -28 196 171 0 0 chr9 124401246 124401281 -17870163 - MIR SINE MIR -65 143 109 263 338 101 29 chr9 124401498 124401586 -17869858 - MER5A DNA MER1_type 0 189 86 467 180 280 20 chr9 124401586 124401736 -17869708 - MER53 DNA DNA 0 189 1 263 338 101 29 chr9 124401736 124401786 -17869658 - MER5A DNA MER1_type -103 86 41 245 353 49 14 chr9 124402251 124402418 -17869026 - MIR SINE MIR -61 147 2 535 261 84 49 chr9 124402543 124402629 -17868815 + L1ME4a LINE L1 5508 5590 -531 2876 129 47 6 chr9 124402629 124403095 -17868349 + MER31A LTR ERV1 1 485 0 535 261 84 49 chr9 124403095 124403295 -17868149 + L1ME4a LINE L1 5590 5804 -317 274 256 137 68 chr9 124403805 124404098 -17867346 + L1ME4a LINE L1 5772 6084 -37 290 313 50 0 chr9 124404668 124404767 -17866677 + MIR SINE MIR 89 192 -70 356 227 82 46 chr9 124404772 124404933 -17866511 + MIR SINE MIR 96 262 0 201 212 0 0 chr9 124404972 124405005 -17866439 + MIR SINE MIR 114 146 -62 315 289 72 24 chr9 124405135 124405301 -17866143 - MIR3 SINE MIR -11 197 24 183 377 66 25 chr9 124405683 124405805 -17865639 + MIR SINE MIR 23 149 -59 543 280 109 25 chr9 124406007 124406222 -17865222 + MIR SINE MIR 4 242 -20 1763 166 62 0 chr9 124406222 124406511 -17864933 - AluSx SINE Alu -3 309 3 543 280 109 25 chr9 124406511 124406534 -17864910 + MIR SINE MIR 242 262 0 364 195 105 16 chr9 124406534 124406662 -17864782 - MIR3 SINE MIR -45 163 13 505 296 181 34 chr9 124407112 124407543 -17863901 + L2 LINE L2 2538 3022 -250 311 288 40 22 chr9 124408153 124408282 -17863162 + MIR3 SINE MIR 23 154 -54 230 312 101 14 chr9 124408767 124408905 -17862539 + L3 LINE CR1 1242 1391 -186 23 0 0 0 chr9 124409350 124409373 -17862071 + GC_rich Low_complexity Low_complexity 1 23 0 33 49 3 0 chr9 124409437 124409526 -17861918 + GC_rich Low_complexity Low_complexity 1 61 0 184 298 48 29 chr9 124409802 124409906 -17861538 + L3 LINE CR1 1347 1452 -125 458 319 43 0 chr9 124409994 124410157 -17861287 + MIR SINE MIR 23 192 -70 277 314 64 85 chr9 124410784 124410972 -17860472 - MIR SINE MIR -12 250 67 317 263 10 50 chr9 124411335 124411434 -17860010 - MIR3 SINE MIR -4 204 110 268 91 0 36 chr9 124411574 124411629 -17859815 + (ATG)n Simple_repeat Simple_repeat 2 54 0 366 164 21 14 chr9 124412454 124412535 -17858909 - LTR16A1 LTR ERVL -5 486 374 1619 178 17 11 chr9 124413165 124413452 -17857992 - AluJo SINE Alu -23 289 1 1484 186 49 17 chr9 124413492 124413551 -17857893 - MER63B DNA MER1_type -702 360 304 1318 193 51 48 chr9 124413551 124413707 -17857737 + THE1C LTR MaLR 1 155 -220 1287 194 16 25 chr9 124413707 124414022 -17857422 - AluSp SINE Alu -1 312 1 1318 193 51 48 chr9 124414022 124414239 -17857205 + THE1C LTR MaLR 155 375 0 1484 186 49 17 chr9 124414239 124414528 -17856916 - MER63B DNA MER1_type -758 304 1 414 381 55 0 chr9 124414536 124414717 -17856727 + L2 LINE L2 3082 3272 0 734 232 123 18 chr9 124415164 124415384 -17856060 - MIR SINE MIR 0 262 20 308 219 183 0 chr9 124415730 124415812 -17855632 + MIR SINE MIR 98 194 -68 464 322 28 17 chr9 124416044 124416221 -17855223 - MIR SINE MIR -63 199 21 234 62 0 0 chr9 124416672 124416704 -17854740 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 242 257 9 57 chr9 124416738 124416843 -17854601 + CT-rich Low_complexity Low_complexity 2 101 0 321 328 46 8 chr9 124416898 124417029 -17854415 + MIR3 SINE MIR 35 170 -38 244 324 25 72 chr9 124418006 124418284 -17853160 + L2 LINE L2 2806 3070 -202 403 330 75 30 chr9 124418325 124418592 -17852852 + L2 LINE L2 3031 3309 -4 429 357 77 0 chr9 124418602 124418745 -17852699 + L2 LINE L2 3102 3255 -17 206 61 0 30 chr9 124418745 124418778 -17852666 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1912 113 0 23 chr9 124419191 124419456 -17851988 - AluSx SINE Alu -14 298 40 1977 128 0 31 chr9 124419771 124420091 -17851353 - AluSx SINE Alu 0 312 3 541 315 27 51 chr9 124420187 124420444 -17851000 + MIR SINE MIR 12 262 0 2817 138 30 26 chr9 124420538 124420773 -17850671 - L1MA4 LINE L1 0 6300 6067 2125 113 0 49 chr9 124420773 124421100 -17850344 - AluSq SINE Alu -2 311 1 2817 138 30 26 chr9 124421100 124421394 -17850050 - L1MA4 LINE L1 -233 6067 5769 667 243 129 86 chr9 124421834 124422166 -17849278 + L1MC4a LINE L1 5611 5927 -1881 1656 170 28 7 chr9 124422166 124422455 -17848989 + AluJb SINE Alu 1 295 -17 2289 71 4 0 chr9 124422456 124422768 -17848676 + AluY SINE Alu 1 313 0 667 243 129 86 chr9 124422768 124422976 -17848468 + L1MC4a LINE L1 5926 6177 -1631 1561 183 33 38 chr9 124424471 124424838 -17846606 + MLT1A1 LTR MaLR 1 365 0 751 251 100 69 chr9 124424884 124425275 -17846169 - MLT1I LTR MaLR 0 409 7 338 140 0 0 chr9 124425660 124425710 -17845734 + L2 LINE L2 3261 3310 -3 203 61 30 0 chr9 124425737 124425770 -17845674 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2213 87 0 17 chr9 124425772 124426060 -17845384 - AluSq SINE Alu -30 283 1 1958 138 6 51 chr9 124426244 124426556 -17844888 + AluSx SINE Alu 1 298 -14 1177 173 0 20 chr9 124426615 124426812 -17844632 + AluJo SINE Alu 1 193 -119 342 0 0 0 chr9 124426829 124426867 -17844577 + (CA)n Simple_repeat Simple_repeat 1 38 0 1884 145 0 11 chr9 124426910 124427192 -17844252 + AluSg SINE Alu 5 283 -27 1897 116 4 11 chr9 124427242 124427517 -17843927 + AluSg SINE Alu 1 273 -37 21 0 0 0 chr9 124427527 124427548 -17843896 + AT_rich Low_complexity Low_complexity 1 21 0 2251 108 10 0 chr9 124428442 124428747 -17842697 + AluSx SINE Alu 1 308 -4 460 231 175 7 chr9 124428758 124428901 -17842543 + MER5A DNA MER1_type 23 189 0 218 227 45 0 chr9 124428912 124428956 -17842488 - MIR3 SINE MIR -54 154 109 308 263 263 0 chr9 124429727 124429864 -17841580 + MIR SINE MIR 20 192 -70 2166 116 20 0 chr9 124430103 124430397 -17841047 - AluSx SINE Alu -12 300 1 1344 170 64 15 chr9 124430397 124430662 -17840782 - AluJo SINE Alu -14 298 21 231 241 19 0 chr9 124431020 124431074 -17840370 - MER81 DNA DNA -3 111 57 308 182 0 65 chr9 124431078 124431113 -17840331 + MLT2A2 LTR ERVL 379 408 -45 378 0 0 0 chr9 124431113 124431155 -17840289 + (CA)n Simple_repeat Simple_repeat 2 43 0 308 182 0 65 chr9 124431155 124431196 -17840248 + MLT2A2 LTR ERVL 408 450 -3 267 54 0 0 chr9 124431201 124431238 -17840206 + (TG)n Simple_repeat Simple_repeat 2 38 0 2200 114 0 3 chr9 124431263 124431553 -17839891 + AluSx SINE Alu 1 289 -23 2222 116 3 13 chr9 124431556 124431858 -17839586 + AluSg SINE Alu 1 299 -11 322 248 0 101 chr9 124431858 124431967 -17839477 - MER34 LTR ERV1 -93 449 352 1399 151 14 5 chr9 124431970 124432188 -17839256 - AluJo SINE Alu -11 301 82 444 270 104 53 chr9 124432193 124432457 -17838987 - MER34 LTR ERV1 -184 523 42 2254 114 0 3 chr9 124432463 124432762 -17838682 + AluSg SINE Alu 1 298 -12 1353 145 5 0 chr9 124432809 124433030 -17838414 - L1M3 LINE L1 -398 5782 5561 468 347 16 16 chr9 124433034 124433224 -17838220 - MIR SINE MIR -48 214 25 412 305 46 35 chr9 124433512 124433709 -17837735 + MLT1K LTR MaLR 140 338 -250 1119 160 5 16 chr9 124434341 124434535 -17836909 - AluJb SINE Alu -16 296 105 1912 162 0 0 chr9 124435089 124435391 -17836053 - AluJb SINE Alu -10 302 1 219 114 0 0 chr9 124435491 124435526 -17835918 + (TG)n Simple_repeat Simple_repeat 1 35 0 786 139 33 0 chr9 124435680 124435802 -17835642 + AluJo SINE Alu 11 136 -176 2442 67 0 0 chr9 124435825 124436125 -17835319 + AluSx SINE Alu 1 300 -12 183 80 0 0 chr9 124436318 124436343 -17835101 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 2137 130 0 0 chr9 124436414 124436722 -17834722 - AluSx SINE Alu -4 308 1 2312 93 3 0 chr9 124437098 124437408 -17834036 + AluSp SINE Alu 1 311 -2 1215 164 36 122 chr9 124437770 124437902 -17833542 + AluJb SINE Alu 1 143 -169 2064 116 7 0 chr9 124437902 124438195 -17833249 + AluSx SINE Alu 1 295 -17 1215 164 36 122 chr9 124438195 124438209 -17833235 + AluJb SINE Alu 143 157 -155 1985 110 43 0 chr9 124438209 124438490 -17832954 + AluSg SINE Alu 1 293 -17 1215 164 36 122 chr9 124438490 124438678 -17832766 + AluJb SINE Alu 157 307 -5 1902 128 7 23 chr9 124438742 124439047 -17832397 + AluSx SINE Alu 1 300 -12 1677 168 0 30 chr9 124439121 124439425 -17832019 - AluJo SINE Alu -17 295 1 252 332 56 25 chr9 124439431 124439824 -17831620 - L1MEd LINE L1 -4862 1510 1077 2128 115 23 0 chr9 124439826 124440131 -17831313 - AluSx SINE Alu 0 312 1 2041 128 0 28 chr9 124440186 124440506 -17830938 - AluSx SINE Alu -1 311 1 188 35 35 0 chr9 124440540 124440569 -17830875 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 201 178 0 0 chr9 124440879 124440924 -17830520 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 222 281 0 45 chr9 124440946 124441035 -17830409 + CT-rich Low_complexity Low_complexity 2 86 0 1202 60 0 0 chr9 124441379 124441530 -17829914 - AluSg/x SINE Alu 0 310 160 391 317 113 30 chr9 124441705 124441935 -17829509 + MIR SINE MIR 14 262 0 235 278 42 14 chr9 124442653 124442725 -17828719 - MER5B DNA MER1_type -58 120 47 636 183 46 30 chr9 124443047 124443178 -17828266 + FLAM_C SINE Alu 1 133 0 2390 61 0 3 chr9 124443278 124443575 -17827869 - AluY SINE Alu -15 296 1 556 261 14 7 chr9 124444175 124444313 -17827131 - MIR SINE MIR -114 148 10 213 39 0 0 chr9 124445681 124445707 -17825737 + (GGAGAA)n Simple_repeat Simple_repeat 3 28 0 1830 149 3 13 chr9 124445756 124446058 -17825386 + AluSx SINE Alu 1 299 -13 2106 100 13 13 chr9 124446548 124446849 -17824595 + AluSg SINE Alu 2 302 -8 707 133 0 42 chr9 124446963 124447083 -17824361 + FRAM SINE Alu 57 171 -5 908 209 0 11 chr9 124447542 124447719 -17823725 - FAM SINE Alu 0 175 1 394 299 66 30 chr9 124447719 124447916 -17823528 + MIR SINE MIR 23 226 -36 742 168 66 36 chr9 124447954 124448121 -17823323 + MIR SINE MIR 51 222 -40 1518 145 45 17 chr9 124448225 124448515 -17822929 + AluJo SINE Alu 1 298 -14 1453 164 51 8 chr9 124449216 124449472 -17821972 + AluJb SINE Alu 30 296 -16 217 254 17 0 chr9 124449607 124449666 -17821778 - L2 LINE L2 -5 3267 3208 213 312 39 0 chr9 124449721 124449798 -17821646 - MIR SINE MIR -79 183 104 1882 168 0 7 chr9 124449976 124450285 -17821159 + AluJb SINE Alu 1 307 -5 619 167 15 8 chr9 124450475 124450607 -17820837 + MER53 DNA DNA 57 189 0 402 242 33 8 chr9 124451088 124451208 -17820236 - LTR16A LTR ERVL -11 439 317 570 43 75 0 chr9 124451230 124451324 -17820120 + GA-rich Low_complexity Low_complexity 1 101 0 1158 272 65 6 chr9 124451324 124451647 -17819797 - LTR16A LTR ERVL -93 357 16 182 240 40 0 chr9 124452329 124452379 -17819065 + L2 LINE L2 3241 3292 -21 686 226 97 26 chr9 124452408 124452603 -17818841 + LTR16A LTR ERVL 131 339 -111 342 0 0 0 chr9 124452603 124452641 -17818803 + (TTCCC)n Simple_repeat Simple_repeat 2 39 0 692 259 20 15 chr9 124453092 124453293 -17818151 + MIR SINE MIR 14 215 -47 710 336 62 42 chr9 124453401 124453838 -17817606 - L2 LINE L2 0 3272 2813 1942 136 0 23 chr9 124453838 124454140 -17817304 + AluSx SINE Alu 1 295 -17 710 336 62 42 chr9 124454140 124454371 -17817073 - L2 LINE L2 -459 2813 2588 622 294 122 17 chr9 124454374 124454718 -17816726 - L2 LINE L2 -1058 2256 1877 1766 156 7 3 chr9 124454736 124455031 -17816413 + AluSx SINE Alu 1 296 -16 859 160 7 13 chr9 124455752 124455902 -17815542 - FRAM SINE Alu -28 148 1 1729 190 0 13 chr9 124455912 124456223 -17815221 - AluJo SINE Alu -5 307 1 216 0 0 0 chr9 124456249 124456273 -17815171 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2267 113 0 0 chr9 124456308 124456619 -17814825 - AluSx SINE Alu -1 311 1 374 342 27 16 chr9 124456698 124456885 -17814559 - MIR SINE MIR -26 236 48 2055 96 4 4 chr9 124456887 124457168 -17814276 - AluSx SINE Alu -11 301 21 307 389 7 7 chr9 124457498 124457647 -17813797 - L2 LINE L2 -228 3044 2896 180 283 0 17 chr9 124457736 124457796 -17813648 - L2 LINE L2 -4 3268 3210 1688 179 37 0 chr9 124457966 124458081 -17813363 + AluJo SINE Alu 5 114 -198 234 0 0 0 chr9 124458081 124458107 -17813337 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1688 179 37 0 chr9 124458107 124458287 -17813157 + AluJo SINE Alu 114 311 -1 1661 146 0 36 chr9 124458563 124458696 -17812748 + AluJo SINE Alu 6 142 -170 2078 92 0 34 chr9 124458696 124459019 -17812425 + AluSp SINE Alu 1 313 0 1661 146 0 36 chr9 124459019 124459186 -17812258 + AluJo SINE Alu 142 296 -16 921 290 96 20 chr9 124459257 124459777 -17811667 - L1MC4a LINE L1 -538 5626 5255 680 309 26 13 chr9 124459779 124460164 -17811280 - L1MC4a LINE L1 -954 5192 4758 195 277 12 48 chr9 124460370 124460453 -17810991 - MIR SINE MIR -127 135 56 342 270 43 17 chr9 124463376 124463491 -17807953 + MIR SINE MIR 31 148 -114 369 302 73 69 chr9 124463926 124464171 -17807273 - L3 LINE CR1 -27 1550 1305 743 275 16 45 chr9 124464265 124464512 -17806932 - MIR SINE MIR 0 262 23 189 107 0 0 chr9 124464544 124464572 -17806872 + (TG)n Simple_repeat Simple_repeat 1 28 0 1501 189 7 40 chr9 124465058 124465220 -17806224 - AluJo SINE Alu -25 287 121 207 0 0 0 chr9 124465220 124465243 -17806201 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2353 53 0 0 chr9 124465243 124465526 -17805918 - AluY SINE Alu -28 283 1 1501 189 7 40 chr9 124465526 124465659 -17805785 - AluJo SINE Alu -189 123 1 208 347 0 31 chr9 124466073 124466171 -17805273 - MIR SINE MIR -63 145 59 316 291 35 56 chr9 124466279 124466451 -17804993 + MIR3 SINE MIR 29 191 -17 216 0 0 0 chr9 124467660 124467684 -17803760 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1912 120 7 3 chr9 124467687 124467970 -17803474 - AluJb SINE Alu -28 284 1 1762 148 0 24 chr9 124468160 124468457 -17802987 - AluJo SINE Alu -22 290 1 1856 106 3 73 chr9 124468712 124469042 -17802402 + AluSx SINE Alu 1 309 0 2250 122 0 0 chr9 124469420 124469732 -17801712 - AluSx SINE Alu 0 312 1 1714 141 13 56 chr9 124469963 124470269 -17801175 - AluJo SINE Alu -14 298 6 217 317 37 66 chr9 124471148 124471391 -17800053 - L2 LINE L2 -400 2914 2679 1969 120 0 10 chr9 124471573 124471902 -17799542 - AluSx SINE Alu 0 312 1 348 350 102 0 chr9 124472297 124472434 -17799010 - MIR3 SINE MIR -15 193 43 222 37 0 0 chr9 124472708 124472735 -17798709 + (TG)n Simple_repeat Simple_repeat 2 28 0 277 290 60 10 chr9 124472871 124472971 -17798473 + MIR SINE MIR 20 124 -138 731 291 87 12 chr9 124472980 124473221 -17798223 - MIR SINE MIR -2 260 2 1850 135 14 4 chr9 124473625 124473929 -17797515 - AluSx SINE Alu 0 307 1 653 253 29 90 chr9 124474048 124474235 -17797209 + MIR SINE MIR 3 169 -93 2145 128 0 0 chr9 124474235 124474540 -17796904 - AluSx SINE Alu -7 305 1 653 253 29 90 chr9 124474540 124474629 -17796815 + MIR SINE MIR 169 262 0 1212 143 5 42 chr9 124474775 124474991 -17796453 + AluJb SINE Alu 84 291 -21 182 91 30 0 chr9 124475384 124475417 -17796027 + (TG)n Simple_repeat Simple_repeat 2 35 0 232 242 16 0 chr9 124475821 124475883 -17795561 + MIR SINE MIR 173 235 -27 283 287 198 40 chr9 124476632 124476834 -17794610 + MIR SINE MIR 8 241 -21 189 250 25 0 chr9 124476801 124476841 -17794603 + L2 LINE L2 3213 3253 -19 * 2332 100 0 0 chr9 124476985 124477295 -17794149 - AluSg SINE Alu 0 310 1 2137 125 0 0 chr9 124477378 124477689 -17793755 - AluSx SINE Alu -1 311 1 477 242 13 38 chr9 124477854 124478011 -17793433 - MER103 DNA DNA -12 154 2 197 286 18 0 chr9 124478099 124478155 -17793289 - MIR SINE MIR -63 145 89 2179 106 10 0 chr9 124478277 124478578 -17792866 - AluSx SINE Alu -8 304 1 2063 103 34 0 chr9 124479704 124479996 -17791448 + AluSx SINE Alu 1 302 -10 331 254 80 0 chr9 124480336 124480458 -17790986 - MIR SINE MIR -63 145 18 305 213 75 11 chr9 124480873 124480967 -17790477 - MLT1K LTR MaLR -478 110 11 1961 117 46 0 chr9 124481018 124481300 -17790144 - AluSx SINE Alu -17 295 1 283 336 8 23 chr9 124481410 124481541 -17789903 + MER117 DNA MER1_type 68 196 -1 2050 137 0 0 chr9 124481793 124482099 -17789345 - AluJb SINE Alu -6 306 1 271 204 0 0 chr9 124482158 124482207 -17789237 - L2 LINE L2 -10 3303 3255 377 298 50 19 chr9 124483104 124483265 -17788179 + MIR SINE MIR 86 251 -11 1973 123 3 63 chr9 124484289 124484621 -17786823 - AluSx SINE Alu 0 312 1 2309 84 0 6 chr9 124484643 124484954 -17786490 - AluSc SINE Alu 0 309 1 1754 159 3 19 chr9 124486020 124486334 -17785110 - AluJo SINE Alu -3 309 1 1360 145 0 0 chr9 124486344 124486571 -17784873 - AluSg/x SINE Alu 0 310 84 193 243 86 43 chr9 124486787 124486857 -17784587 + L2 LINE L2 2996 3068 -204 663 292 36 16 chr9 124487006 124487149 -17784295 + MIR SINE MIR 15 162 -100 1977 146 67 6 chr9 124487149 124487477 -17783967 + MER7A DNA MER2_type 1 346 0 663 292 36 16 chr9 124487477 124487581 -17783863 + MIR SINE MIR 162 262 0 309 230 37 104 chr9 124487750 124487885 -17783559 - MIR SINE MIR -79 183 58 1783 133 6 71 chr9 124487908 124488230 -17783214 - AluSx SINE Alu -11 301 1 279 276 99 55 chr9 124488406 124488587 -17782857 + Charlie8 DNA MER1_type 26 214 -2203 226 296 20 31 chr9 124488858 124488956 -17782488 - L2 LINE L2 0 3272 3176 2322 84 3 0 chr9 124489094 124489392 -17782052 - AluSq SINE Alu -14 299 1 829 118 22 22 chr9 124489549 124489685 -17781759 - L1MC1 LINE L1 0 6333 6198 21 36 0 0 chr9 124489724 124489752 -17781692 + AT_rich Low_complexity Low_complexity 1 28 0 354 23 0 0 chr9 124489789 124489832 -17781612 + (CA)n Simple_repeat Simple_repeat 2 44 0 445 322 10 83 chr9 124489949 124490263 -17781181 - L1MC1 LINE L1 -1997 5811 5521 196 221 250 0 chr9 124491240 124491308 -17780136 - L2 LINE L2 -212 3060 2976 521 227 94 0 chr9 124491463 124491591 -17779853 + MIR SINE MIR 32 171 -91 1398 215 28 102 chr9 124492580 124492941 -17778503 + Charlie4a DNA MER1_type 18 404 -1557 1742 129 0 4 chr9 124492941 124493196 -17778248 + AluSg SINE Alu 36 289 -21 1398 215 28 102 chr9 124493196 124493265 -17778179 + Charlie4a DNA MER1_type 404 404 -1557 2161 115 3 0 chr9 124493265 124493570 -17777874 - AluSx SINE Alu -6 306 1 1398 215 28 102 chr9 124493570 124493668 -17777776 + Charlie4a DNA MER1_type 404 508 0 2318 88 0 0 chr9 124494198 124494505 -17776939 + AluSc SINE Alu 1 307 -2 627 263 31 40 chr9 124494751 124494979 -17776465 + MIR SINE MIR 16 241 -21 386 283 21 41 chr9 124496129 124496274 -17775170 + L3b LINE CR1 1321 1462 -121 427 296 68 68 chr9 124496536 124496756 -17774688 + L2 LINE L2 2966 3185 -87 348 176 0 0 chr9 124497671 124497739 -17773705 + (TG)n Simple_repeat Simple_repeat 1 68 0 305 297 90 7 chr9 124497971 124498116 -17773328 - MIR SINE MIR -68 194 38 1822 123 3 21 chr9 124498585 124498870 -17772574 - AluSx SINE Alu -32 280 1 383 321 61 18 chr9 124499506 124499671 -17771773 - MIR SINE MIR -70 192 21 553 305 18 0 chr9 124499786 124499950 -17771494 + MIR SINE MIR 67 233 -29 1725 119 129 22 chr9 124500783 124501094 -17770350 - MER2 DNA MER2_type 0 344 1 301 313 34 28 chr9 124501340 124501516 -17769928 - L2 LINE L2 -620 2694 2518 210 255 0 20 chr9 124501727 124501778 -17769666 + MIR SINE MIR 33 82 -180 205 198 0 0 chr9 124502303 124502352 -17769092 + MIR SINE MIR 105 152 -62 303 304 23 64 chr9 124502477 124502648 -17768796 + MER5A DNA MER1_type 2 165 -24 251 229 295 0 chr9 124503506 124503611 -17767833 + L3 LINE CR1 1339 1474 -103 216 355 50 8 chr9 124504114 124504235 -17767209 - MIR3 SINE MIR -4 204 79 192 77 0 0 chr9 124504243 124504269 -17767175 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 306 50 0 0 chr9 124504424 124504464 -17766980 + (CCTG)n Simple_repeat Simple_repeat 2 41 0 404 39 26 52 chr9 124504464 124504541 -17766903 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 1158 159 35 26 chr9 124504546 124504953 -17766491 - AluJo SINE Alu 0 312 85 510 161 58 0 chr9 124504953 124505040 -17766404 - AluSg/x SINE Alu -62 248 157 986 193 0 43 chr9 124505058 124505265 -17766179 - AluJo SINE Alu -92 220 23 186 43 0 0 chr9 124505278 124505301 -17766143 + (A)n Simple_repeat Simple_repeat 1 23 0 906 291 109 19 chr9 124505334 124505709 -17765735 - L2 LINE L2 -6 3307 2899 289 288 59 46 chr9 124505740 124505893 -17765551 + MER5B DNA MER1_type 8 162 -16 * 309 264 43 36 chr9 124505769 124505909 -17765535 - MER5A DNA MER1_type -36 153 13 318 309 50 0 chr9 124505938 124506061 -17765383 - MIR SINE MIR -61 147 13 384 301 15 58 chr9 124506110 124506369 -17765075 + L2 LINE L2 2812 3059 -213 1691 183 0 10 chr9 124506548 124506849 -17764595 + AluJo SINE Alu 1 298 -14 371 139 74 16 chr9 124506854 124506976 -17764468 + GA-rich Low_complexity Low_complexity 4 132 0 2108 111 16 3 chr9 124506977 124507319 -17764125 + AluSx SINE Alu 1 346 0 268 316 94 0 chr9 124507356 124507473 -17763971 - MIR SINE MIR -54 208 81 182 216 59 0 chr9 124508182 124508233 -17763211 + MIR SINE MIR 82 135 -73 182 227 0 23 chr9 124508403 124508447 -17762997 + MIR3 SINE MIR 163 205 -3 537 263 69 17 chr9 124509511 124509686 -17761758 + MIR SINE MIR 47 230 -32 382 157 5 110 chr9 124510403 124510512 -17760932 - L1MC4 LINE L1 -1337 6985 1995 2572 93 3 24 chr9 124510550 124510927 -17760517 + L1PB1 LINE L1 5782 6150 -1 231 307 59 10 chr9 124511247 124511348 -17760096 + MER5A DNA MER1_type 54 159 -30 1524 107 8 58 chr9 124512550 124512792 -17758652 - MER30 DNA MER1_type 0 230 1 208 182 104 52 chr9 124513226 124513303 -17758141 + MIR SINE MIR 66 146 -62 22 56 0 0 chr9 124514396 124514432 -17757012 + GC_rich Low_complexity Low_complexity 1 36 0 188 348 125 0 chr9 124515419 124515531 -17755913 + MIR SINE MIR 24 149 -113 * 310 264 6 101 chr9 124515521 124515680 -17755764 + L3 LINE CR1 1330 1473 -104 294 210 16 0 chr9 124516112 124516174 -17755270 + MIR SINE MIR 81 143 -65 205 279 15 15 chr9 124516572 124516640 -17754804 - L2 LINE L2 -213 3059 2992 241 229 202 9 chr9 124516646 124516755 -17754689 + MIR SINE MIR 17 146 -62 618 118 0 0 chr9 124517004 124517089 -17754355 + FLAM_C SINE Alu 36 120 -23 210 37 0 0 chr9 124517094 124517121 -17754323 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 229 245 0 19 chr9 124517711 124517764 -17753680 + MIR3 SINE MIR 104 155 -53 304 379 30 8 chr9 124518063 124518195 -17753249 - L2 LINE L2 0 3272 3138 294 216 200 24 chr9 124518234 124518359 -17753085 + MIR3 SINE MIR 20 166 -42 2423 58 3 0 chr9 124518672 124518967 -17752477 - AluSp SINE Alu -17 296 1 592 277 76 0 chr9 124519339 124519537 -17751907 - MIR SINE MIR -19 243 33 233 266 23 86 chr9 124520087 124520215 -17751229 - MIR SINE MIR -24 238 119 364 336 0 9 chr9 124520544 124520657 -17750787 - MIR SINE MIR -55 153 42 231 234 47 0 chr9 124522010 124522074 -17749370 + MIR SINE MIR 58 124 -84 2259 44 0 4 chr9 124522208 124522482 -17748962 + AluY SINE Alu 38 310 -1 648 265 59 15 chr9 124522822 124523026 -17748418 - MIR SINE MIR 0 262 50 1577 207 7 0 chr9 124524360 124524660 -17746784 + AluJo SINE Alu 1 302 -10 225 225 8 101 chr9 124524674 124524803 -17746641 - L1ME4a LINE L1 -45 6076 5960 1853 184 43 6 chr9 124524964 124525290 -17746154 + MER58B DNA MER1_type 2 339 -2 1725 208 66 28 chr9 124526743 124527287 -17744157 - L1M4 LINE L1 -1194 4952 4388 884 208 23 0 chr9 124527296 124527469 -17743975 - LTR40a LTR ERVL -12 507 331 806 161 0 29 chr9 124527881 124528018 -17743426 + FLAM_C SINE Alu 1 133 0 2675 154 83 4 chr9 124528595 124529063 -17742381 - MLT1D LTR MaLR 0 505 1 1931 64 0 64 chr9 124529155 124529436 -17742008 + L1PA8 LINE L1 5909 6171 -1 441 0 0 0 chr9 124529527 124529576 -17741868 + (CA)n Simple_repeat Simple_repeat 2 50 0 2037 98 0 63 chr9 124529674 124529990 -17741454 - AluSx SINE Alu -16 296 1 2086 123 0 22 chr9 124530140 124530457 -17740987 - AluSq SINE Alu -3 310 1 2360 119 11 8 chr9 124530483 124530837 -17740607 - THE1A LTR MaLR 0 355 1 557 184 0 10 chr9 124530855 124530953 -17740491 - AluSc SINE Alu -14 295 199 1407 180 0 4 chr9 124530953 124531197 -17740247 - AluSx SINE Alu -67 245 3 229 219 16 0 chr9 124531208 124531272 -17740172 + T-rich Low_complexity Low_complexity 1 65 0 2100 111 0 49 chr9 124531568 124531892 -17739552 - AluSx SINE Alu -4 308 1 476 209 73 0 chr9 124531898 124532008 -17739436 - L1MD2 LINE L1 -14 6345 6228 2028 230 45 29 chr9 124532026 124532583 -17738861 - MER90 LTR ERV1 -6 569 4 1686 206 23 9 chr9 124532603 124532952 -17738492 - L1MD2 LINE L1 -218 6141 5788 2064 232 70 56 chr9 124532952 124533395 -17738049 - MLT1E2 LTR MaLR 0 626 170 1986 121 0 35 chr9 124533395 124533531 -17737913 + AluSx SINE Alu 1 140 -172 2271 94 0 0 chr9 124533531 124533840 -17737604 + AluSc SINE Alu 1 309 0 1986 121 0 35 chr9 124533840 124534016 -17737428 + AluSx SINE Alu 140 302 -10 2064 232 70 56 chr9 124534016 124534183 -17737261 - MLT1E2 LTR MaLR -456 170 7 541 137 10 10 chr9 124534192 124534294 -17737150 - L1MD2 LINE L1 -570 5789 5688 538 335 51 38 chr9 124534305 124534756 -17736688 - L1ME3A LINE L1 -243 5927 5471 21 0 0 0 chr9 124535154 124535175 -17736269 + AT_rich Low_complexity Low_complexity 1 21 0 262 290 50 10 chr9 124535410 124535510 -17735934 + MIR SINE MIR 18 122 -86 241 267 52 43 chr9 124535978 124536094 -17735350 + MIR SINE MIR 73 189 -73 863 167 95 45 chr9 124536110 124536331 -17735113 + MER106A DNA MER1_type 1 232 -4 324 286 27 27 chr9 124536428 124536540 -17734904 + MIR SINE MIR 39 150 -58 380 283 58 15 chr9 124536587 124536792 -17734652 - LTR33 LTR ERVL 0 521 308 431 309 24 6 chr9 124536860 124537028 -17734416 - LTR33 LTR ERVL -343 178 8 289 338 80 33 chr9 124537227 124537378 -17734066 + MIR3 SINE MIR 31 188 -20 290 26 26 0 chr9 124537537 124537576 -17733868 + (TG)n Simple_repeat Simple_repeat 2 41 0 293 284 52 17 chr9 124538286 124538402 -17733042 + MIR SINE MIR 17 136 -72 191 373 0 13 chr9 124539189 124539264 -17732180 - L2 LINE L2 -10 3262 3189 303 71 0 0 chr9 124539293 124539335 -17732109 + (CA)n Simple_repeat Simple_repeat 2 43 0 331 337 6 37 chr9 124539629 124539792 -17731652 + Charlie8 DNA MER1_type 67 224 -2193 296 329 46 20 chr9 124539862 124539908 -17731536 - L3 LINE CR1 -3 1574 1531 1616 160 7 10 chr9 124539908 124540196 -17731248 + AluJo SINE Alu 12 298 -14 296 329 46 20 chr9 124540196 124540301 -17731143 - L3 LINE CR1 -46 1531 1419 2180 110 0 0 chr9 124540332 124540622 -17730822 - AluSx SINE Alu -22 290 1 2567 189 67 2 chr9 124540643 124541229 -17730215 - L1MB4 LINE L1 -6 6174 5551 189 147 0 0 chr9 124541458 124541492 -17729952 + (CCA)n Simple_repeat Simple_repeat 2 35 0 290 240 143 0 chr9 124541840 124541931 -17729513 + HsTC2 DNA Tc2 1795 1895 -3 360 0 0 0 chr9 124542074 124542114 -17729330 + (CA)n Simple_repeat Simple_repeat 2 41 0 253 299 110 16 chr9 124542133 124542260 -17729184 - L2 LINE L2 0 3272 3134 312 308 0 45 chr9 124542441 124542574 -17728870 - L2 LINE L2 -222 3050 2924 264 260 58 58 chr9 124542952 124543056 -17728388 - MER5A DNA MER1_type -48 141 38 244 227 0 93 chr9 124543001 124543076 -17728368 + MER5A DNA MER1_type 114 181 -8 * 614 254 20 70 chr9 124543317 124543391 -17728053 - MIR SINE MIR 0 262 186 2340 103 0 0 chr9 124543391 124543703 -17727741 - AluSx SINE Alu 0 312 1 614 254 20 70 chr9 124543703 124543872 -17727572 - MIR SINE MIR -76 186 31 431 297 34 0 chr9 124544213 124544331 -17727113 - MIR SINE MIR -79 183 62 290 316 118 10 chr9 124544417 124544622 -17726822 + MIR3 SINE MIR 15 250 -12 180 315 207 0 chr9 124545042 124545153 -17726291 - MIR3 SINE MIR -7 201 68 279 291 214 0 chr9 124545248 124545365 -17726079 + MIR3 SINE MIR 49 190 -18 210 368 0 23 chr9 124545385 124545472 -17725972 + MIR SINE MIR 7 91 -171 280 308 28 49 chr9 124546393 124546536 -17724908 - L2 LINE L2 -188 3084 2945 436 313 21 0 chr9 124546861 124547005 -17724439 - MIR3 SINE MIR -18 190 44 201 191 71 0 chr9 124547454 124547496 -17723948 - MIR SINE MIR -75 133 89 263 310 17 26 chr9 124548141 124548257 -17723187 - MIR SINE MIR -98 164 50 261 343 39 0 chr9 124548320 124548422 -17723022 - L2 LINE L2 0 3313 3208 233 310 0 0 chr9 124548604 124548675 -17722769 + L3 LINE CR1 959 1029 -548 215 311 164 8 chr9 124549293 124549415 -17722029 + MIR SINE MIR 50 190 -72 257 190 38 38 chr9 124550198 124550277 -17721167 + MIR SINE MIR 9 87 -175 307 210 0 0 chr9 124550311 124550373 -17721071 - MIR SINE MIR -27 235 174 478 296 12 2 chr9 124550527 124550684 -17720760 - MIR3 SINE MIR -60 148 5 340 340 204 16 chr9 124551129 124551438 -17720006 + L2 LINE L2 2901 3267 -5 2168 116 0 3 chr9 124551672 124551973 -17719471 + AluSx SINE Alu 2 301 -11 353 242 31 10 chr9 124552465 124552574 -17718870 - MIR3 SINE MIR -22 186 74 466 281 184 10 chr9 124552584 124552780 -17718664 + MIR SINE MIR 19 248 -14 189 288 14 41 chr9 124552823 124552896 -17718548 - MIR SINE MIR -131 77 9 199 245 5 169 chr9 124553551 124553735 -17717709 + L2 LINE L2 2909 3062 -210 264 219 172 80 chr9 124553803 124553954 -17717490 - L2 LINE L2 -4 3309 3145 547 125 0 0 chr9 124554109 124554197 -17717247 + AluSc SINE Alu 209 296 -13 498 271 148 0 chr9 124554239 124554394 -17717050 - MIR SINE MIR -22 240 63 205 167 0 30 chr9 124554926 124554992 -17716452 + (TG)n Simple_repeat Simple_repeat 1 64 0 483 243 10 0 chr9 124555656 124555759 -17715685 - MIR3 SINE MIR -3 205 102 349 269 167 6 chr9 124555802 124555958 -17715486 + MIR3 SINE MIR 21 201 -7 223 283 0 0 chr9 124556480 124556540 -17714904 - L2 LINE L2 -20 3293 3234 267 255 170 11 chr9 124556889 124556983 -17714461 + MIR SINE MIR 31 139 -123 238 391 26 0 chr9 124557155 124557270 -17714174 + L3 LINE CR1 419 536 -1041 259 320 156 0 chr9 124557520 124557642 -17713802 + L3 LINE CR1 886 1026 -551 401 314 114 0 chr9 124558074 124558214 -17713230 - MIR SINE MIR -67 195 40 2276 98 3 0 chr9 124558522 124558828 -17712616 - AluSx SINE Alu -4 308 2 235 261 230 19 chr9 124559257 124559418 -17712026 + MIR3 SINE MIR 4 198 -10 228 271 17 0 chr9 124560371 124560430 -17711014 - L2 LINE L2 -218 3054 2995 283 175 32 32 chr9 124560556 124560619 -17710825 + MIR SINE MIR 81 143 -65 22 80 0 0 chr9 124561665 124561715 -17709729 + GC_rich Low_complexity Low_complexity 1 50 0 36 28 5 0 chr9 124561923 124562008 -17709436 + GC_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr9 124562185 124562216 -17709228 + GC_rich Low_complexity Low_complexity 1 31 0 372 246 127 0 chr9 124566000 124566110 -17705334 + MIR SINE MIR 89 212 -50 248 322 148 7 chr9 124566256 124566405 -17705039 + MIR SINE MIR 93 262 0 745 308 64 29 chr9 124566509 124566993 -17704451 - L1ME LINE L1 -298 5823 5323 250 250 17 0 chr9 124567155 124567215 -17704229 + CT-rich Low_complexity Low_complexity 1 61 0 278 192 0 0 chr9 124567835 124567887 -17703557 + MIR SINE MIR 184 235 -27 236 323 17 32 chr9 124569018 124569142 -17702302 + MIR SINE MIR 48 174 -53 371 169 39 13 chr9 124570503 124570580 -17700864 + MER5A DNA MER1_type 43 121 -68 322 259 143 27 chr9 124570625 124570772 -17700672 - MIR SINE MIR -17 245 82 202 237 301 11 chr9 124571020 124571113 -17700331 - MIR SINE MIR -65 143 24 195 368 34 5 chr9 124571159 124571261 -17700183 - MIR SINE MIR -69 139 31 184 326 11 45 chr9 124571543 124571632 -17699812 + MIR SINE MIR 10 95 -167 860 261 9 14 chr9 124571888 124572099 -17699345 - MIR SINE MIR -19 243 34 257 294 150 20 chr9 124572203 124572403 -17699041 - MIR3 SINE MIR -12 250 19 630 308 145 0 chr9 124572406 124572633 -17698811 - MIR SINE MIR -1 261 2 438 248 44 9 chr9 124572638 124572751 -17698693 - MIR SINE MIR -116 146 30 337 276 30 15 chr9 124573856 124573990 -17697454 - MER103 DNA DNA -7 159 24 284 295 38 0 chr9 124575320 124575425 -17696019 + MER103 DNA DNA 37 145 -21 258 356 20 0 chr9 124575445 124575546 -17695898 - L3 LINE CR1 -115 1462 1360 355 269 132 29 chr9 124575581 124575753 -17695691 - MIR3 SINE MIR -65 143 9 385 284 39 45 chr9 124576399 124576554 -17694890 + MIR SINE MIR 49 202 -60 351 380 24 35 chr9 124577108 124577363 -17694081 - L2 LINE L2 -20 3252 3001 428 315 71 0 chr9 124577439 124577566 -17693878 - MIR SINE MIR -75 187 52 2300 85 0 19 chr9 124577831 124578148 -17693296 - AluY SINE Alu 0 311 1 417 261 55 36 chr9 124578477 124578642 -17692802 + MER5A DNA MER1_type 18 185 -4 438 256 210 0 chr9 124581054 124581230 -17690214 + MIR SINE MIR 28 240 -22 216 324 14 0 chr9 124581690 124581764 -17689680 - MIR SINE MIR -64 144 70 297 330 38 38 chr9 124581827 124582036 -17689408 - L2 LINE L2 -215 3057 2849 459 278 99 13 chr9 124582191 124582342 -17689102 - MIR SINE MIR -71 191 28 298 349 84 12 chr9 124582690 124582856 -17688588 + L2 LINE L2 3093 3270 -2 * 311 247 34 162 chr9 124582855 124583129 -17688315 - MIR SINE MIR -13 249 5 263 246 0 43 chr9 124583868 124583937 -17687507 - L2 LINE L2 0 3272 3207 567 209 109 63 chr9 124583999 124584238 -17687206 - Charlie8 DNA MER1_type -2142 275 26 196 333 0 0 chr9 124585017 124585071 -17686373 - L2 LINE L2 -4 3268 3215 545 221 0 0 chr9 124585223 124585327 -17686117 + FLAM_A SINE Alu 34 137 -5 217 268 87 134 chr9 124585837 124586068 -17685376 - L2 LINE L2 -49 3223 3004 197 324 209 0 chr9 124586346 124586451 -17684993 + MIR SINE MIR 58 184 -78 383 330 165 31 chr9 124586751 124587133 -17684311 + L2 LINE L2 2863 3295 -18 496 281 64 18 chr9 124587139 124587310 -17684134 - MIR SINE MIR -72 190 12 228 143 0 0 chr9 124587642 124587684 -17683760 + (TG)n Simple_repeat Simple_repeat 2 43 0 3657 179 74 20 chr9 124588452 124589251 -17682193 + MER21B LTR ERV1 1 842 -21 501 308 76 13 chr9 124589707 124589931 -17681513 + MIR SINE MIR 3 240 -22 240 284 0 0 chr9 124590486 124590553 -17680891 - L2 LINE L2 -9 3263 3197 316 275 30 8 chr9 124590622 124590740 -17680704 + MIR SINE MIR 20 141 -67 334 278 56 56 chr9 124590854 124591016 -17680428 + MIR SINE MIR 10 171 -91 658 326 36 0 chr9 124591530 124591751 -17679693 - MIR SINE MIR 0 262 34 199 211 0 0 chr9 124591841 124591879 -17679565 - MIR SINE MIR -61 147 110 303 227 45 11 chr9 124592297 124592385 -17679059 + Charlie8 DNA MER1_type 109 199 -2218 269 304 85 3 chr9 124592468 124592608 -17678836 - MIR SINE MIR -63 145 3 253 295 36 30 chr9 124593056 124593234 -17678210 - MIR SINE MIR -28 234 58 * 336 282 48 0 chr9 124593226 124593329 -17678115 + MIR SINE MIR 67 174 -88 183 283 75 0 chr9 124593667 124593720 -17677724 + L2 LINE L2 3142 3198 -74 * 344 239 77 39 chr9 124593693 124593825 -17677619 + MIR SINE MIR 24 167 -41 297 0 0 0 chr9 124594161 124594194 -17677250 + (CTGGGG)n Simple_repeat Simple_repeat 3 35 0 691 310 22 18 chr9 124595199 124595425 -17676019 + MIR SINE MIR 33 259 -3 244 349 0 9 chr9 124596180 124596286 -17675158 - L2 LINE L2 -197 3075 2971 2735 19 0 0 chr9 124596591 124596899 -17674545 + AluYb8 SINE Alu 1 308 -10 202 255 39 0 chr9 124597921 124597972 -17673472 + L2 LINE L2 3211 3263 -9 694 249 221 18 chr9 124599256 124599582 -17671862 - L2 LINE L2 0 3313 2922 198 178 44 0 chr9 124601149 124601194 -17670250 + L2 LINE L2 3018 3064 -208 261 374 101 0 chr9 124601417 124601556 -17669888 - L2 LINE L2 -5 3308 3156 421 205 120 26 chr9 124601587 124601704 -17669740 + L2 LINE L2 3184 3311 -2 262 323 197 17 chr9 124601681 124602261 -17669183 - L2 LINE L2 -155 3158 2466 * 539 345 52 0 chr9 124602287 124602539 -17668905 - L2 LINE L2 -965 2349 2085 181 273 149 50 chr9 124602607 124602728 -17668716 - L2 LINE L2 -1390 1924 1792 187 245 61 0 chr9 124602792 124602841 -17668603 + L2 LINE L2 1932 1983 -1331 458 349 29 2 chr9 124603391 124603599 -17667845 - MIR SINE MIR -36 226 16 193 204 93 0 chr9 124604282 124604336 -17667108 - MIR SINE MIR -64 144 86 681 247 52 11 chr9 124604451 124604625 -17666819 - MIR SINE MIR -78 184 4 2150 115 0 3 chr9 124604763 124605059 -17666385 + AluSq SINE Alu 1 295 -18 236 277 46 0 chr9 124605442 124605507 -17665937 + MIR SINE MIR 121 188 -74 391 337 60 6 chr9 124605705 124605871 -17665573 + MIR SINE MIR 60 234 -28 245 327 55 27 chr9 124607291 124607401 -17664043 + MIR SINE MIR 16 128 -80 353 176 29 0 chr9 124608949 124609017 -17662427 - MIR SINE MIR -114 148 79 2497 63 0 0 chr9 124609961 124610264 -17661180 - AluY SINE Alu -8 303 1 271 293 40 20 chr9 124610998 124611097 -17660347 + MIR SINE MIR 43 143 -65 222 301 0 32 chr9 124611223 124611316 -17660128 + MIR SINE MIR 168 257 -5 256 203 34 17 chr9 124612373 124612432 -17659012 - MIR SINE MIR -99 163 104 206 302 0 0 chr9 124612556 124612609 -17658835 + L2 LINE L2 3221 3273 -40 479 311 24 61 chr9 124612688 124612900 -17658544 - MIR SINE MIR -46 216 13 363 268 238 30 chr9 124613033 124613197 -17658247 - L3 LINE CR1 -82 1495 1298 285 254 15 0 chr9 124613894 124613961 -17657483 + MIR SINE MIR 48 115 -147 234 306 0 0 chr9 124615126 124615198 -17656246 - L2 LINE L2 -206 3066 2995 197 163 70 0 chr9 124615495 124615538 -17655906 - MIR SINE MIR -55 153 108 * 255 308 63 35 chr9 124615525 124615720 -17655724 + MIR SINE MIR 36 238 -24 202 256 113 38 chr9 124616172 124616305 -17655139 + MIR SINE MIR 47 189 -73 209 295 71 54 chr9 124618796 124618908 -17652536 - MIR SINE MIR -89 173 60 235 300 55 9 chr9 124620258 124620368 -17651076 - MIR3 SINE MIR -38 170 56 252 330 51 17 chr9 124622219 124622337 -17649107 - MIR SINE MIR -91 171 50 295 239 83 46 chr9 124624771 124624880 -17646564 + MIR SINE MIR 19 131 -77 184 374 30 46 chr9 124628152 124628283 -17643161 - MIR SINE MIR -74 188 60 227 314 108 0 chr9 124628418 124628520 -17642924 + MIR SINE MIR 36 148 -60 237 342 13 13 chr9 124629603 124629755 -17641689 - L1ME LINE L1 -233 5888 5737 326 359 88 41 chr9 124630243 124630755 -17640689 - L2 LINE L2 -559 2755 2220 187 278 83 46 chr9 124630836 124630944 -17640500 - L2 LINE L2 -1365 1949 1838 329 271 147 28 chr9 124632039 124632216 -17639228 - L1ME4a LINE L1 -204 5917 5720 248 316 59 72 chr9 124632933 124633085 -17638359 - MER5A DNA MER1_type -2 187 38 251 341 65 33 chr9 124633411 124633625 -17637819 - L2 LINE L2 -120 3152 2932 195 323 81 43 chr9 124633648 124633809 -17637635 + MER5A DNA MER1_type 18 184 -5 210 150 0 25 chr9 124635899 124635939 -17635505 + (CCCCCG)n Simple_repeat Simple_repeat 2 40 0 182 236 0 14 chr9 124639125 124639197 -17632247 - L2 LINE L2 -337 2977 2907 294 270 36 15 chr9 124640248 124640385 -17631059 - L1MEc LINE L1 -3594 2621 2482 1293 211 92 12 chr9 124640391 124640620 -17630824 - L1MEc LINE L1 -3652 2563 2354 1458 224 44 33 chr9 124640620 124640981 -17630463 - MLT1A1 LTR MaLR 0 365 1 1293 211 92 12 chr9 124640981 124641235 -17630209 - L1MEc LINE L1 -3861 2354 2083 562 212 95 11 chr9 124641244 124641403 -17630041 - MER58B DNA MER1_type 0 341 26 423 326 34 0 chr9 124641431 124641578 -17629866 - L1MEc LINE L1 -4745 1470 1319 2383 251 103 24 chr9 124641580 124642639 -17628805 - L1MEc LINE L1 -5105 1291 149 815 128 0 0 chr9 124642686 124642803 -17628641 - FLAM_C SINE Alu -26 117 1 198 269 258 0 chr9 124643143 124643329 -17628115 - L2 LINE L2 -1108 2206 1973 181 162 27 0 chr9 124644308 124644345 -17627099 + L3 LINE CR1 905 942 -635 322 291 114 59 chr9 124650111 124650165 -17621279 + L1M4 LINE L1 2351 2401 -3745 1423 175 46 19 chr9 124650165 124650428 -17621016 - L1PB4 LINE L1 -1 6155 5886 322 291 114 59 chr9 124650428 124650627 -17620817 + L1M4 LINE L1 2401 2618 -3528 473 310 93 49 chr9 124650947 124651418 -17620026 + HAL1 LINE L1 23 514 -1993 686 184 6 0 chr9 124651632 124651811 -17619633 + (CA)n Simple_repeat Simple_repeat 1 180 0 758 189 6 0 chr9 124651858 124652033 -17619411 + (CA)n Simple_repeat Simple_repeat 2 177 0 242 312 96 8 chr9 124652041 124652166 -17619278 + HAL1 LINE L1 835 970 -1537 1780 117 39 18 chr9 124652175 124652456 -17618988 + AluSx SINE Alu 1 287 -25 333 140 0 0 chr9 124652457 124652514 -17618930 + (TA)n Simple_repeat Simple_repeat 1 57 0 324 266 0 53 chr9 124652525 124652619 -17618825 - L1MC4 LINE L1 -1339 6703 6615 3538 56 5 7 chr9 124652619 124653068 -17618376 + LTR7 LTR ERV1 1 448 -2 9281 231 81 61 chr9 124653070 124656985 -17614459 + HERVH LTR ERV1 1 3993 -3720 5918 71 6 5 chr9 124656987 124657775 -17613669 + HERVH LTR ERV1 4488 5276 -2437 * 8768 59 6 4 chr9 124657774 124658937 -17612507 + HERVH LTR ERV1 6549 7713 0 3585 56 2 7 chr9 124658937 124659387 -17612057 + LTR7 LTR ERV1 1 448 -2 367 258 9 9 chr9 124659387 124659479 -17611965 + L1MC4 LINE L1 1991 6979 -1343 520 281 71 52 chr9 124659716 124659983 -17611461 + L2 LINE L2 2201 2472 -842 236 259 63 97 chr9 124659988 124660246 -17611198 + HAL1b LINE L1 1226 1324 -24 315 275 72 6 chr9 124660284 124660451 -17610993 + L1ME4a LINE L1 5769 5946 -175 338 344 48 35 chr9 124660472 124660699 -17610745 + MIR SINE MIR 3 232 -30 2288 104 0 0 chr9 124661926 124662235 -17609209 - AluSx SINE Alu -3 309 1 512 194 39 8 chr9 124662297 124662426 -17609018 - LTR37A LTR ERV1 0 426 294 1522 144 16 8 chr9 124762593 124762849 -17508595 - MLT1B LTR MaLR -132 258 1 195 167 0 0 chr9 124762868 124762910 -17508534 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 180 125 0 0 chr9 124762999 124763031 -17508413 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 3152 108 16 0 chr9 124763048 124763473 -17507971 + LTR3 LTR ERVK 1 432 0 194 290 151 32 chr9 124763475 124763568 -17507876 - L2 LINE L2 -25 3288 3185 263 221 53 42 chr9 124763935 124764030 -17507414 - MIR SINE MIR -70 138 43 2010 128 31 3 chr9 124764989 124765278 -17506166 + AluSx SINE Alu 1 297 -15 4256 55 11 2 chr9 124765278 124765806 -17505638 + L1PA7 LINE L1 5618 6150 -4 218 255 122 20 chr9 124765884 124765982 -17505462 - L2 LINE L2 -10 3303 3196 208 319 55 11 chr9 124766514 124766605 -17504839 + L2 LINE L2 3201 3295 -18 337 327 59 23 chr9 124766606 124766826 -17504618 - MIR SINE MIR -1 261 34 388 285 106 22 chr9 124767795 124767974 -17503470 - MIR SINE MIR -29 233 40 860 283 14 0 chr9 124768002 124768214 -17503230 + MER58A DNA MER1_type 2 216 -8 207 261 0 0 chr9 124769073 124769119 -17502325 + (TG)n Simple_repeat Simple_repeat 2 47 0 572 315 49 20 chr9 124769744 124769847 -17501597 + L1MC4a LINE L1 5574 5672 -2136 465 19 0 0 chr9 124769847 124769901 -17501543 + (CA)n Simple_repeat Simple_repeat 2 55 0 572 315 49 20 chr9 124769901 124770102 -17501342 + L1MC4a LINE L1 5672 5887 -1921 566 263 46 62 chr9 124770776 124771016 -17500428 + MLT1L LTR MaLR 1 236 -379 1535 198 19 38 chr9 124771052 124771473 -17499971 + AluJo SINE Alu 1 415 0 384 113 0 38 chr9 124771603 124771683 -17499761 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 375 308 42 28 chr9 124771862 124772076 -17499368 + L1MEc LINE L1 39 255 -6141 200 366 9 18 chr9 124772320 124772432 -17499012 + L2 LINE L2 3188 3298 -15 1524 243 53 7 chr9 124772654 124773086 -17498358 + L1ME3A LINE L1 5717 6168 -2 846 158 0 8 chr9 124773694 124773827 -17497617 + FLAM_C SINE Alu 2 133 0 232 214 14 29 chr9 124773878 124773948 -17497496 - MIR SINE MIR 0 262 194 1737 168 3 30 chr9 124773975 124774272 -17497172 + AluJb SINE Alu 1 289 -23 2530 38 0 7 chr9 124776324 124776617 -17494827 + SVA Other Other 757 1047 -339 3052 65 3 3 chr9 124776628 124777014 -17494430 + L1PA7 LINE L1 5769 6154 0 664 242 11 17 chr9 124777534 124777712 -17493732 + MER5B DNA MER1_type 1 177 -1 332 47 0 0 chr9 124778377 124778420 -17493024 - L1P LINE L1 -4272 1874 1832 1773 34 0 0 chr9 124778420 124778627 -17492817 + L1PA4 LINE L1 5949 6155 0 375 230 108 14 chr9 124779203 124779342 -17492102 - L1ME4a LINE L1 -3 6118 5967 258 305 55 73 chr9 124780246 124780300 -17491144 + MER5A DNA MER1_type 12 65 -124 2076 133 0 0 chr9 124780300 124780609 -17490835 + AluSx SINE Alu 1 309 0 258 305 55 73 chr9 124780609 124780717 -17490727 + MER5A DNA MER1_type 65 183 -6 396 324 27 40 chr9 124780723 124780945 -17490499 - MIR SINE MIR -10 252 34 533 143 125 45 chr9 124780945 124781057 -17490387 - MER45A DNA AcHobo -33 145 25 615 255 71 24 chr9 124782104 124782316 -17489128 + MIR SINE MIR 31 252 -10 374 280 29 8 chr9 124782374 124782500 -17488944 + MIR SINE MIR 38 164 -65 27 0 0 0 chr9 124782520 124782547 -17488897 + AT_rich Low_complexity Low_complexity 1 27 0 2360 87 0 0 chr9 124782547 124782845 -17488599 - AluSq SINE Alu -15 298 1 345 222 0 0 chr9 124782849 124782921 -17488523 - L2 LINE L2 -15 3298 3227 190 286 0 29 chr9 124782946 124783016 -17488428 + MIR SINE MIR 180 247 -15 414 0 0 0 chr9 124783320 124783366 -17488078 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2043 222 58 29 chr9 124783815 124784334 -17487110 + MLT1F1 LTR MaLR 34 567 0 267 296 116 35 chr9 124784528 124784727 -17486717 + L2 LINE L2 2639 2853 -461 456 250 61 8 chr9 124784840 124784972 -17486472 - L2 LINE L2 -15 3298 3160 1803 38 0 0 chr9 124785502 124785712 -17485732 + L1P2 LINE L1 5612 5821 -333 3187 279 50 42 chr9 124785739 124787251 -17484193 - L1MEc LINE L1 -4837 1559 35 1336 258 183 27 chr9 124787252 124787306 -17484138 - L2 LINE L2 -277 3036 2992 2198 88 20 20 chr9 124787306 124787611 -17483833 + AluSq SINE Alu 1 305 -8 1336 258 183 27 chr9 124787611 124788211 -17483233 - L2 LINE L2 -321 2992 2310 243 0 0 0 chr9 124788661 124788688 -17482756 + (TG)n Simple_repeat Simple_repeat 1 27 0 235 297 78 84 chr9 124788728 124789075 -17482369 + L1P4 LINE L1 5320 5664 -502 271 299 226 23 chr9 124789459 124789636 -17481808 - MIR SINE MIR -29 233 21 1679 118 187 32 chr9 124789750 124790065 -17481379 + THE1B LTR MaLR 1 364 0 195 237 0 0 chr9 124790139 124790177 -17481267 + L2 LINE L2 3250 3287 -26 553 299 124 18 chr9 124791312 124791700 -17479744 + L2 LINE L2 2844 3272 0 195 240 40 0 chr9 124792336 124792386 -17479058 - MIR SINE MIR -56 206 155 182 339 39 15 chr9 124792458 124792588 -17478856 - MIR3 SINE MIR -71 137 5 413 241 141 75 chr9 124792612 124792684 -17478760 + MIR SINE MIR 22 88 -174 1346 225 24 48 chr9 124792684 124793058 -17478386 - MLT1A1 LTR MaLR 0 365 1 413 241 141 75 chr9 124793058 124793184 -17478260 + MIR SINE MIR 88 233 -29 200 348 26 17 chr9 124793556 124793671 -17477773 - L2 LINE L2 -213 3059 2944 192 320 90 13 chr9 124793832 124793910 -17477534 - MER5A DNA MER1_type 0 189 106 908 181 0 0 chr9 124794154 124794320 -17477124 - L1MA10 LINE L1 0 6334 6169 1963 128 3 13 chr9 124794327 124794639 -17476805 - AluSc SINE Alu 0 309 1 815 158 0 16 chr9 124794641 124794768 -17476676 - FLAM_A SINE Alu -5 128 4 2298 85 0 0 chr9 124795061 124795354 -17476090 + AluSg SINE Alu 1 293 -17 281 267 117 50 chr9 124795626 124795746 -17475698 + MIR SINE MIR 21 148 -60 283 296 148 7 chr9 124795980 124796115 -17475329 - MIR3 SINE MIR -17 191 38 329 322 52 38 chr9 124796567 124796778 -17474666 + MIR SINE MIR 39 252 -10 874 132 0 22 chr9 124797362 124797498 -17473946 + AluSq/x SINE Alu 1 133 -180 186 43 0 0 chr9 124797498 124797521 -17473923 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 196 293 47 57 chr9 124798230 124798336 -17473108 + L2 LINE L2 3154 3258 -14 184 262 107 90 chr9 124798387 124798509 -17472935 - MIR SINE MIR -120 142 19 4585 197 115 45 chr9 124799486 124799923 -17471521 - Charlie1a DNA MER1_type -1306 1455 1050 2070 94 3 14 chr9 124799923 124800243 -17471201 + AluSp SINE Alu 1 317 0 4585 197 115 45 chr9 124800243 124800926 -17470518 - Charlie1a DNA MER1_type -1711 1050 183 2161 98 0 13 chr9 124800926 124801232 -17470212 - AluSg SINE Alu -8 302 1 4585 197 115 45 chr9 124801232 124801429 -17470015 - Charlie1a DNA MER1_type -2578 183 1 616 326 44 38 chr9 124801436 124801755 -17469689 - L2 LINE L2 -497 2817 2497 857 188 0 6 chr9 124802229 124802394 -17469050 - AluJb SINE Alu -2 310 147 234 266 86 16 chr9 124802637 124802765 -17468679 - L1ME4a LINE L1 -41 6080 5944 248 232 89 0 chr9 124803125 124803181 -17468263 + MIR SINE MIR 130 190 -72 529 302 52 60 chr9 124803195 124803447 -17467997 - MIR SINE MIR 0 262 13 202 214 0 0 chr9 124803562 124803604 -17467840 + L2 LINE L2 3269 3310 -3 321 243 130 65 chr9 124803667 124803852 -17467592 + L1M2 LINE L1 1760 1956 -4893 330 226 142 64 chr9 124803899 124803983 -17467461 + L1ME4a LINE L1 3995 4071 -2075 2145 97 0 7 chr9 124803983 124804283 -17467161 + AluSc SINE Alu 1 298 -11 330 226 142 64 chr9 124804283 124804402 -17467042 + L1ME4a LINE L1 4071 4214 -1932 731 266 36 66 chr9 124804406 124804881 -17466563 + L1ME4a LINE L1 5137 5596 -566 333 208 97 0 chr9 124804885 124804957 -17466487 - L2 LINE L2 -18 3295 3217 228 322 44 0 chr9 124804996 124805086 -17466358 + L1ME4a LINE L1 5630 5723 -447 336 286 54 61 chr9 124805255 124805402 -17466042 + L1ME4a LINE L1 5786 5931 -239 250 255 108 10 chr9 124805571 124805673 -17465771 + L1MC4 LINE L1 7928 8039 -3 2035 119 7 13 chr9 124806311 124806613 -17464831 - AluSg SINE Alu -10 300 1 202 289 179 70 chr9 124807417 124807729 -17463715 + L2 LINE L2 2321 2666 -648 320 309 67 6 chr9 124807792 124807957 -17463487 + L2 LINE L2 2430 2604 -710 369 102 0 0 chr9 124808111 124808170 -17463274 + (CA)n Simple_repeat Simple_repeat 1 59 0 671 330 13 4 chr9 124808889 124809125 -17462319 - MIR SINE MIR -12 250 13 789 193 155 0 chr9 124810149 124810310 -17461134 + MER5A DNA MER1_type 2 187 -2 1140 276 135 25 chr9 124810971 124811363 -17460081 + MER115 DNA AcHobo 2 436 -257 184 250 0 0 chr9 124811464 124811504 -17459940 + L2 LINE L2 3271 3310 -3 425 279 36 0 chr9 124811527 124811638 -17459806 - MIR SINE MIR -70 192 78 604 307 72 47 chr9 124811639 124812001 -17459443 - L3 LINE CR1 -94 1483 1113 641 330 166 16 chr9 124812794 124813361 -17458083 + L2 LINE L2 2253 2904 -410 309 339 83 62 chr9 124813370 124813562 -17457882 - L1ME3A LINE L1 -14 6156 5961 584 257 101 23 chr9 124813605 124813862 -17457582 - L1ME3A LINE L1 -202 5968 5692 282 312 72 8 chr9 124814860 124814985 -17456459 - MIR SINE MIR -117 145 13 2222 108 0 0 chr9 124815226 124815531 -17455913 + AluSx SINE Alu 1 305 -7 308 219 101 25 chr9 124815607 124815726 -17455718 + L1ME4a LINE L1 5991 6118 -3 380 215 0 0 chr9 124815986 124816065 -17455379 - MER116 DNA Mariner 0 80 2 584 302 49 10 chr9 124816473 124816678 -17454766 + MIR SINE MIR 36 248 -14 360 268 123 16 chr9 124816701 124816844 -17454600 - MIR SINE MIR -60 148 13 323 125 0 0 chr9 124817578 124817634 -17453810 + L1PA15 LINE L1 6110 6165 0 2086 122 3 0 chr9 124817738 124818049 -17453395 - AluSx SINE Alu 0 312 1 189 349 48 5 chr9 124818096 124818285 -17453159 + L2 LINE L2 2839 3035 -237 193 111 0 0 chr9 124818457 124818484 -17452960 + MIR SINE MIR 222 248 -14 1844 136 177 11 chr9 124818664 124819031 -17452413 - MSTA LTR MaLR 0 428 1 304 291 36 27 chr9 124820183 124820293 -17451151 + MIR SINE MIR 35 145 -117 210 322 0 56 chr9 124820304 124820394 -17451050 + L3 LINE CR1 1397 1481 -96 2402 68 3 0 chr9 124820667 124820976 -17450468 - AluSg SINE Alu 0 310 1 2312 173 37 0 chr9 124821178 124821606 -17449838 + L1MB5 LINE L1 5725 6168 -6 1808 94 4 16 chr9 124822003 124822257 -17449187 - AluSg SINE Alu -4 306 56 2336 92 0 0 chr9 124822319 124822623 -17448821 - AluSx SINE Alu -8 304 1 437 293 8 8 chr9 124822642 124822765 -17448679 - MIR SINE MIR -109 153 31 3962 36 0 0 chr9 124823975 124824443 -17447001 + L1P3 LINE L1 5315 5782 -372 570 288 111 9 chr9 124824557 124824783 -17446661 - L2 LINE L2 -1035 2279 2031 492 293 38 86 chr9 124824797 124825087 -17446357 + L2 LINE L2 2980 3255 -17 641 293 54 13 chr9 124825537 124825776 -17445668 - MIR SINE MIR -1 261 13 405 227 216 0 chr9 124826462 124826593 -17444851 - MIR SINE MIR -56 152 33 2463 51 0 16 chr9 124826693 124827009 -17444435 - AluY SINE Alu 0 311 1 299 224 0 0 chr9 124827157 124827233 -17444211 - MIR SINE MIR -123 139 64 583 255 47 21 chr9 124828047 124828282 -17443162 + L1ME3A LINE L1 5722 5962 -208 663 298 123 61 chr9 124828684 124830059 -17441385 + L2 LINE L2 1806 3272 0 198 103 0 0 chr9 124830059 124830088 -17441356 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 562 244 144 12 chr9 124830097 124830257 -17441187 - MIR SINE MIR -54 208 28 213 244 0 0 chr9 124831011 124831056 -17440388 + L2 LINE L2 3226 3270 -2 293 298 64 11 chr9 124831163 124831257 -17440187 + MIR3 SINE MIR 5 103 -105 293 236 42 0 chr9 124831304 124831376 -17440068 - MIR SINE MIR -12 250 176 539 290 155 10 chr9 124831416 124831616 -17439828 + MIR SINE MIR 4 232 -30 197 222 175 0 chr9 124831653 124831716 -17439728 - MIR SINE MIR -97 111 38 448 276 40 46 chr9 124831721 124831895 -17439549 + MIR SINE MIR 89 261 -1 384 260 24 16 chr9 124831890 124832013 -17439431 - L3 LINE CR1 -753 824 701 * 605 275 23 29 chr9 124832969 124833140 -17438304 - MIR3 SINE MIR -3 205 36 508 235 8 17 chr9 124833607 124833726 -17437718 - MER5B DNA MER1_type -59 119 2 2066 111 25 56 chr9 124834114 124834510 -17436934 + L1MB3 LINE L1 5793 6176 -7 21 0 0 0 chr9 124834515 124834536 -17436908 + AT_rich Low_complexity Low_complexity 1 21 0 492 305 71 7 chr9 124834556 124834710 -17436734 + MIR3 SINE MIR 19 182 -26 1027 192 119 27 chr9 124835573 124835792 -17435652 - MIR SINE MIR 0 262 24 324 298 23 35 chr9 124836648 124836819 -17434625 - L2 LINE L2 -787 2527 2359 269 233 0 12 chr9 124837641 124837727 -17433717 + (CA)n Simple_repeat Simple_repeat 2 86 0 364 222 74 0 chr9 124837727 124837808 -17433636 - MIR SINE MIR -65 143 57 259 87 7 0 chr9 124837813 124837854 -17433590 - HSMAR1 DNA Mariner -37 43 1 254 276 22 55 chr9 124838028 124838126 -17433318 - MIR3 SINE MIR -46 162 67 446 222 19 19 chr9 124838752 124838860 -17432584 + MIR3 SINE MIR 8 115 -93 2380 100 3 0 chr9 124839465 124839776 -17431668 - AluSx SINE Alu 0 312 1 757 148 0 9 chr9 124840022 124840130 -17431314 - FLAM_C SINE Alu -35 108 2 194 219 57 154 chr9 124840209 124840332 -17431112 + L2 LINE L2 3149 3259 -13 453 280 238 13 chr9 124840413 124840795 -17430649 + L2 LINE L2 2177 2644 -670 230 296 42 14 chr9 124840799 124840870 -17430574 - MIR SINE MIR -37 225 153 251 291 40 108 chr9 124840971 124841119 -17430325 - MIR SINE MIR -105 157 20 3988 92 20 23 chr9 124841220 124841381 -17430063 + MER41A LTR ERV1 1 161 -393 2471 75 0 3 chr9 124841381 124841689 -17429755 + AluY SINE Alu 1 307 -4 3988 92 20 23 chr9 124841689 124842083 -17429361 + MER41A LTR ERV1 161 554 0 2082 113 3 26 chr9 124842370 124842680 -17428764 - AluSx SINE Alu -9 303 1 192 273 76 0 chr9 124842698 124842764 -17428680 - MIR SINE MIR -66 142 72 2494 70 0 3 chr9 124843941 124844241 -17427203 + AluSc SINE Alu 1 299 -10 1509 114 0 14 chr9 124844760 124844971 -17426473 - AluSg/x SINE Alu -11 299 92 569 136 0 0 chr9 124845072 124845160 -17426284 + AluS SINE Alu 223 310 -1 1900 116 0 4 chr9 124845363 124845622 -17425822 - AluSq SINE Alu -17 296 39 286 367 11 0 chr9 124845850 124845940 -17425504 + L2 LINE L2 3137 3227 -45 588 289 71 57 chr9 124845958 124846294 -17425150 + L3 LINE CR1 1232 1572 -5 375 260 30 10 chr9 124846304 124846404 -17425040 + MIR SINE MIR 46 147 -61 543 251 60 70 chr9 124846782 124847065 -17424379 + MER20B DNA MER1_type 9 335 -448 2191 100 7 10 chr9 124847065 124847364 -17424080 + AluSx SINE Alu 1 298 -14 543 251 60 70 chr9 124847364 124847492 -17423952 + MER20B DNA MER1_type 335 463 -320 563 219 66 70 chr9 124847604 124847710 -17423734 + MER20B DNA MER1_type 513 618 -165 1952 134 19 10 chr9 124847710 124848017 -17423427 + AluSx SINE Alu 1 310 -2 563 219 66 70 chr9 124848017 124848152 -17423292 + MER20B DNA MER1_type 618 753 -30 755 151 205 6 chr9 124848152 124848318 -17423126 + L1MC4a LINE L1 6638 6836 -972 1426 77 72 10 chr9 124848318 124848513 -17422931 + AluSq SINE Alu 107 313 0 3550 193 44 13 chr9 124848528 124849273 -17422171 + L1MC4 LINE L1 6962 7729 -313 6256 109 54 8 chr9 124849274 124850334 -17421110 + L1MA8 LINE L1 5178 6284 -7 44 70 0 0 chr9 124850334 124850420 -17421024 + AT_rich Low_complexity Low_complexity 1 86 0 361 227 23 40 chr9 124850521 124850697 -17420747 + (TA)n Simple_repeat Simple_repeat 2 174 0 21 36 0 0 chr9 124850700 124850728 -17420716 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr9 124850907 124850940 -17420504 + AT_rich Low_complexity Low_complexity 1 33 0 818 239 114 0 chr9 124851399 124851600 -17419844 + MER58A DNA MER1_type 1 224 0 418 238 0 90 chr9 124851926 124851966 -17419478 + MIR SINE MIR 82 124 -138 2302 133 39 33 chr9 124851966 124852328 -17419116 + THE1B LTR MaLR 1 364 0 418 238 0 90 chr9 124852328 124852409 -17419035 + MIR SINE MIR 124 192 -70 653 192 47 23 chr9 124852512 124852684 -17418760 + L1MC4 LINE L1 7710 7885 -157 475 204 36 2 chr9 124852706 124852815 -17418629 + L1MC4 LINE L1 6246 6359 0 372 43 0 0 chr9 124853665 124853711 -17417733 + (CA)n Simple_repeat Simple_repeat 2 47 0 26 0 0 0 chr9 124853818 124853844 -17417600 + AT_rich Low_complexity Low_complexity 1 26 0 208 303 168 25 chr9 124853947 124854066 -17417378 - L2 LINE L2 0 3272 3137 435 255 55 35 chr9 124854108 124854253 -17417191 - MIR3 SINE MIR -50 158 11 182 262 60 74 chr9 124854379 124854528 -17416916 - L2 LINE L2 -214 3058 2912 402 208 35 144 chr9 124854927 124855091 -17416353 - MIR3 SINE MIR -4 204 64 2175 120 10 0 chr9 124855091 124855399 -17416045 + AluSx SINE Alu 1 311 -1 402 208 35 144 chr9 124855399 124855436 -17416008 - MIR3 SINE MIR -144 64 25 256 336 106 9 chr9 124855558 124855671 -17415773 + L2 LINE L2 3137 3260 -12 437 222 37 37 chr9 124855693 124855801 -17415643 + MIR SINE MIR 37 144 -64 207 188 275 25 chr9 124855891 124855971 -17415473 + L2 LINE L2 3159 3258 -14 238 253 116 48 chr9 124855999 124856123 -17415321 + MIR SINE MIR 72 206 -56 180 152 0 0 chr9 124856806 124856839 -17414605 + A-rich Low_complexity Low_complexity 1 33 0 480 314 69 5 chr9 124856875 124857063 -17414381 - L2 LINE L2 -8 3305 3106 357 320 23 29 chr9 124858302 124858474 -17412970 + L1ME LINE L1 5590 5760 -361 2151 104 31 0 chr9 124858480 124858768 -17412676 - AluSg SINE Alu -13 297 1 2492 76 0 0 chr9 124859117 124859419 -17412025 - AluY SINE Alu -9 302 1 217 333 53 0 chr9 124859852 124859927 -17411517 - MIR3 SINE MIR -14 194 116 307 318 133 41 chr9 124859970 124860436 -17411008 + L2 LINE L2 2336 2844 -470 1839 163 0 7 chr9 124860448 124860742 -17410702 - AluJb SINE Alu -4 308 17 2375 122 39 39 chr9 124860742 124861103 -17410341 + THE1B LTR MaLR 4 364 0 290 342 144 5 chr9 124861157 124861359 -17410085 + L2 LINE L2 2877 3106 -166 335 203 98 68 chr9 124861466 124861599 -17409845 + MIR SINE MIR 61 197 -65 1362 229 35 41 chr9 124861599 124861966 -17409478 + MLT1A1 LTR MaLR 1 365 0 5237 261 62 22 chr9 124862027 124863787 -17407657 + L1ME1 LINE L1 31 1861 -4535 5107 184 41 60 chr9 124863888 124865323 -17406121 + L1ME1 LINE L1 4169 5557 -678 1936 121 46 0 chr9 124865323 124865604 -17405840 + AluJb SINE Alu 4 297 -15 5107 184 41 60 chr9 124865604 124866107 -17405337 + L1ME1 LINE L1 5557 6068 -167 2293 113 3 0 chr9 124866126 124866427 -17405017 + AluSx SINE Alu 1 302 -10 658 220 6 19 chr9 124866454 124866613 -17404831 + L1MA10 LINE L1 6176 6332 -2 2477 191 73 45 chr9 124866615 124866911 -17404533 + L1MC4a LINE L1 7168 7454 -354 2791 108 75 8 chr9 124866911 124867311 -17404133 - MSTA LTR MaLR -1 427 1 2477 191 73 45 chr9 124867311 124867631 -17403813 + L1MC4a LINE L1 7454 7801 -7 2670 217 82 31 chr9 124867635 124868469 -17402975 + L1MEc LINE L1 1623 2498 -3898 1961 240 39 2 chr9 124868477 124869015 -17402429 + L1MEc LINE L1 2528 3085 -3130 6559 118 63 11 chr9 124869027 124870093 -17401351 + Tigger3b DNA MER2_type 111 1231 0 477 225 0 22 chr9 124870211 124870328 -17401116 - L1ME2 LINE L1 -1 6333 6059 642 254 12 18 chr9 124870498 124870609 -17400835 + MIR SINE MIR 90 201 -61 1960 122 3 61 chr9 124870609 124870938 -17400506 + AluSx SINE Alu 1 310 -2 642 254 12 18 chr9 124870938 124870991 -17400453 + MIR SINE MIR 201 253 -9 804 90 0 0 chr9 124872531 124872631 -17398813 + AluY SINE Alu 196 295 -16 1864 146 7 30 chr9 124872764 124873065 -17398379 - AluJb SINE Alu -17 295 2 2317 99 3 0 chr9 124873075 124873377 -17398067 - AluSq SINE Alu -10 303 1 233 380 95 23 chr9 124875587 124875808 -17395636 + L2 LINE L2 2531 2767 -547 1983 134 3 17 chr9 124878328 124878620 -17392824 + AluSx SINE Alu 1 288 -24 382 264 38 0 chr9 124879438 124879544 -17391900 - MIR SINE MIR -74 188 79 * 566 270 70 28 chr9 124879539 124879754 -17391690 - MIR SINE MIR -20 242 19 234 0 0 0 chr9 124879827 124879853 -17391591 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 249 33 0 0 chr9 124879852 124879882 -17391562 + (CA)n Simple_repeat Simple_repeat 1 30 0 181 328 0 35 chr9 124881145 124881203 -17390241 - L2 LINE L2 -18 3254 3199 3127 217 30 81 chr9 124881269 124881978 -17389466 + L1MB3 LINE L1 4020 4763 -1383 1700 147 52 21 chr9 124881978 124882264 -17389180 - AluSx SINE Alu -15 297 3 3127 217 30 81 chr9 124882264 124882329 -17389115 + L1MB3 LINE L1 4763 4830 -1316 5731 123 25 22 chr9 124882329 124883208 -17388236 + L1MC1 LINE L1 5434 6315 -18 3127 217 30 81 chr9 124883208 124883804 -17387640 + L1MB3 LINE L1 4830 5272 -874 6762 24 0 0 chr9 124883823 124884587 -17386857 - L1PA4 LINE L1 0 6155 5392 313 118 153 47 chr9 124884585 124884670 -17386774 + L1M LINE L1 5262 5355 -825 * 4088 162 84 21 chr9 124884844 124885021 -17386423 + L1MB3 LINE L1 5284 5449 -734 1551 131 76 48 chr9 124885021 124885312 -17386132 + AluJo SINE Alu 1 299 -13 4088 162 84 21 chr9 124885312 124885464 -17385980 + L1MB3 LINE L1 5449 5590 -593 2281 98 7 0 chr9 124885464 124885761 -17385683 + AluSx SINE Alu 1 299 -13 4088 162 84 21 chr9 124885761 124886277 -17385167 + L1MB3 LINE L1 5590 6183 0 2228 142 145 0 chr9 124886299 124886672 -17384772 + MSTA LTR MaLR 1 427 -1 232 318 47 35 chr9 124886880 124886965 -17384479 + MIR SINE MIR 20 105 -103 421 272 106 110 chr9 124887083 124887331 -17384113 - L2 LINE L2 0 3272 3025 499 254 32 0 chr9 124887331 124887457 -17383987 - MER94 DNA DNA -3 131 2 421 272 106 110 chr9 124887457 124887634 -17383810 - L2 LINE L2 -247 3025 2849 227 79 26 0 chr9 124888751 124888789 -17382655 + (TA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr9 124888792 124888823 -17382621 + AT_rich Low_complexity Low_complexity 1 31 0 275 238 32 0 chr9 124890393 124890456 -17380988 + MIR3 SINE MIR 14 78 -130 2169 110 7 7 chr9 124890899 124891209 -17380235 - AluSx SINE Alu -2 310 1 2405 84 0 3 chr9 124892096 124892395 -17379049 - AluSc SINE Alu -11 298 1 3791 69 15 0 chr9 124892423 124892900 -17378544 + MER41A LTR ERV1 71 554 0 184 246 217 0 chr9 124892935 124893004 -17378440 + MIR SINE MIR 127 210 -52 27 0 0 0 chr9 124893096 124893123 -17378321 + AT_rich Low_complexity Low_complexity 1 27 0 184 191 149 0 chr9 124893653 124893700 -17377744 - MIR SINE MIR -74 188 135 459 266 92 44 chr9 124894594 124894865 -17376579 + L3 LINE CR1 1142 1425 -152 277 333 58 0 chr9 124894897 124895017 -17376427 + MIR3 SINE MIR 4 130 -78 472 264 134 15 chr9 124895828 124896029 -17375415 + MIR SINE MIR 17 241 -21 529 330 53 0 chr9 124896286 124896513 -17374931 + MIR SINE MIR 20 258 -4 199 250 0 19 chr9 124896528 124896580 -17374864 + L2 LINE L2 3210 3260 -12 448 211 105 35 chr9 124897239 124897353 -17374091 + MER63 DNA MER1_type 2 749 -313 549 179 76 109 chr9 124897694 124897878 -17373566 + MER5B DNA MER1_type 1 178 0 183 278 62 31 chr9 124898242 124898339 -17373105 + L2 LINE L2 2844 2943 -329 183 250 0 0 chr9 124898427 124898471 -17372973 - L2 LINE L2 -5 3308 3265 267 259 80 0 chr9 124899729 124899841 -17371603 - MIR SINE MIR -122 140 20 21 36 0 0 chr9 124899941 124899969 -17371475 + AT_rich Low_complexity Low_complexity 1 28 0 2229 120 3 0 chr9 124900033 124900334 -17371110 - AluSx SINE Alu -10 302 1 233 167 0 0 chr9 124900652 124900694 -17370750 - L2 LINE L2 0 3272 3231 207 0 0 0 chr9 124901798 124901821 -17369623 + (A)n Simple_repeat Simple_repeat 1 23 0 743 276 114 49 chr9 124901983 124902429 -17369015 - L2 LINE L2 0 3313 2839 216 323 55 6 chr9 124902576 124902740 -17368704 - L2 LINE L2 -710 2604 2433 267 284 126 0 chr9 124902798 124902925 -17368519 - L2 LINE L2 -1275 2039 1897 1637 202 7 3 chr9 124903377 124903684 -17367760 - AluJo SINE Alu -4 308 1 564 181 52 151 chr9 124904411 124904682 -17366762 - MIR SINE MIR -7 255 12 190 200 50 88 chr9 124905358 124905438 -17366006 + MIR SINE MIR 146 222 -40 1372 219 46 24 chr9 124905771 124906265 -17365179 + MLT1F1 LTR MaLR 1 567 0 209 343 0 14 chr9 124906436 124906506 -17364938 - MIR SINE MIR -174 88 20 189 0 0 0 chr9 124906522 124906543 -17364901 + (TGGA)n Simple_repeat Simple_repeat 2 22 0 1376 129 9 34 chr9 124906590 124906823 -17364621 - MER73 LTR ERVL 0 644 418 254 87 22 0 chr9 124906825 124906871 -17364573 + (TC)n Simple_repeat Simple_repeat 2 48 0 1648 149 64 0 chr9 124906872 124907153 -17364291 - MER73 LTR ERVL -343 301 3 256 224 127 104 chr9 124907642 124907776 -17363668 + MIR SINE MIR 120 256 -6 3073 88 44 12 chr9 124910382 124910421 -17361023 - MLT2A1 LTR ERVL 0 444 408 360 0 0 0 chr9 124910421 124910461 -17360983 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 3073 88 44 12 chr9 124910461 124910851 -17360593 - MLT2A1 LTR ERVL -36 408 1 203 265 15 29 chr9 124910973 124911041 -17360403 - MIR SINE MIR -100 162 96 218 287 62 31 chr9 124911110 124911239 -17360205 + MIR3 SINE MIR 4 136 -72 429 249 12 77 chr9 124911583 124911752 -17359692 - MIR SINE MIR -57 205 48 1984 117 17 17 chr9 124912539 124912839 -17358605 - AluSx SINE Alu -9 303 4 300 282 14 0 chr9 124914423 124914494 -17356950 - L2 LINE L2 0 3272 3201 957 214 14 0 chr9 124914516 124914731 -17356713 - MIR SINE MIR -14 248 31 1443 202 88 88 chr9 124914844 124915456 -17355988 - MLT1E3 LTR MaLR 0 624 1 228 415 0 0 chr9 124915611 124915741 -17355703 - MIR SINE MIR -113 149 20 460 217 86 97 chr9 124915803 124915978 -17355466 + MIR3 SINE MIR 10 182 -26 2026 203 31 18 chr9 124916110 124916568 -17354876 - MLT1C LTR MaLR 0 467 4 400 273 75 46 chr9 124916574 124916842 -17354602 - L1ME LINE L1 -393 5777 5396 2262 113 0 16 chr9 124916842 124917152 -17354292 - AluSg SINE Alu -5 305 1 400 273 75 46 chr9 124917152 124917199 -17354245 - L1ME LINE L1 -774 5396 5352 2352 86 0 0 chr9 124917679 124917969 -17353475 - AluSx SINE Alu -6 306 17 1770 175 0 10 chr9 124918005 124918297 -17353147 - AluJb SINE Alu -23 289 1 637 179 9 0 chr9 124918953 124919059 -17352385 - MER81 DNA DNA -7 107 1 379 275 0 11 chr9 124919808 124919899 -17351545 - L2 LINE L2 -47 3225 3136 188 266 16 137 chr9 124920043 124920167 -17351277 - MIR SINE MIR -132 130 22 192 179 48 107 chr9 124920254 124920338 -17351106 - MER5A DNA MER1_type 0 189 111 494 291 42 0 chr9 124920821 124920986 -17350458 + MIR SINE MIR 26 197 -65 225 0 0 0 chr9 124921405 124921430 -17350014 + (TTG)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chr9 124921431 124921460 -17349984 + (TGG)n Simple_repeat Simple_repeat 3 31 0 2398 121 25 8 chr9 124921952 124922316 -17349128 - THE1C LTR MaLR -5 370 1 346 281 144 13 chr9 124922330 124922483 -17348961 + MIR SINE MIR 47 219 -43 1941 109 67 7 chr9 124922734 124923019 -17348425 - AluSx SINE Alu -10 302 1 558 333 18 15 chr9 124923177 124923450 -17347994 + L1MC4a LINE L1 5630 5903 -1905 554 257 131 36 chr9 124923687 124923909 -17347535 - MIR SINE MIR 0 262 20 1153 232 75 7 chr9 124923921 124924214 -17347230 + MLT1J2 LTR MaLR 1 313 -137 310 274 63 11 chr9 124924380 124924475 -17346969 - L2 LINE L2 -9 3263 3164 2168 124 7 0 chr9 124924617 124924924 -17346520 + AluSx SINE Alu 1 309 -3 345 47 0 0 chr9 124925206 124925249 -17346195 + (CA)n Simple_repeat Simple_repeat 1 43 0 220 281 70 53 chr9 124927167 124927258 -17344186 + L2 LINE L2 2634 2729 -585 189 74 0 0 chr9 124927258 124927285 -17344159 + (CA)n Simple_repeat Simple_repeat 1 27 0 220 281 70 53 chr9 124927285 124927307 -17344137 + L2 LINE L2 2729 2749 -565 730 200 0 0 chr9 124927314 124927429 -17344015 + FLAM_A SINE Alu 6 120 -22 240 302 152 58 chr9 124927485 124927578 -17343866 + L2 LINE L2 2804 2887 -385 2364 99 0 0 chr9 124927578 124927872 -17343572 + AluSx SINE Alu 1 294 -18 240 302 152 58 chr9 124927872 124928205 -17343239 + L2 LINE L2 2887 3270 -2 369 266 21 144 chr9 124928214 124928344 -17343100 - L2 LINE L2 -9 3263 3193 2020 134 3 3 chr9 124928344 124928653 -17342791 + AluSx SINE Alu 1 309 0 369 266 21 144 chr9 124928653 124928847 -17342597 - L2 LINE L2 -79 3193 2977 2229 112 0 10 chr9 124929207 124929510 -17341934 + AluSx SINE Alu 1 300 -12 1478 164 71 21 chr9 124929837 124930118 -17341326 + AluJo SINE Alu 2 296 -16 245 207 69 17 chr9 124930432 124930490 -17340954 + MER91 DNA MER1_type 127 187 -3 280 250 125 11 chr9 124930491 124930579 -17340865 + L2 LINE L2 3173 3270 -2 192 209 23 0 chr9 124931199 124931242 -17340202 - L2 LINE L2 -8 3264 3221 376 253 20 48 chr9 124931347 124931493 -17339951 + L2 LINE L2 2564 2705 -609 289 320 154 52 chr9 124931570 124931939 -17339505 + L1MEd LINE L1 383 789 -5416 694 284 125 7 chr9 124931948 124932356 -17339088 + L1MEd LINE L1 1229 1684 -4712 1162 238 82 53 chr9 124932925 124933509 -17337935 + L1MEd LINE L1 2699 3299 -2916 280 244 77 36 chr9 124933841 124933980 -17337464 - MIR SINE MIR -44 218 76 1997 124 61 32 chr9 124934200 124934546 -17336898 - L1M4 LINE L1 -430 5754 5399 2351 91 7 0 chr9 124934646 124934942 -17336502 + AluY SINE Alu 1 298 -13 738 156 0 64 chr9 124935063 124935204 -17336240 + FLAM_C SINE Alu 2 133 0 538 273 155 28 chr9 124935489 124935619 -17335825 + L1ME4a LINE L1 5542 5654 -467 1774 163 6 34 chr9 124935619 124935939 -17335505 + AluJo SINE Alu 2 312 0 538 273 155 28 chr9 124935939 124936318 -17335126 + L1ME4a LINE L1 5654 6116 -5 710 263 158 44 chr9 124937051 124937438 -17334006 + L1MC4a LINE L1 5256 5421 -883 2200 125 7 0 chr9 124937438 124937741 -17333703 + AluSx SINE Alu 1 305 -7 710 263 158 44 chr9 124937741 124937905 -17333539 + L1MC4a LINE L1 5421 5565 -739 1737 141 30 34 chr9 124937968 124938266 -17333178 + AluJb SINE Alu 2 298 -14 202 182 0 36 chr9 124938266 124938321 -17333123 + (TA)n Simple_repeat Simple_repeat 2 54 0 899 288 48 40 chr9 124938323 124938719 -17332725 + MLT1I LTR MaLR 3 401 -8 2235 122 0 0 chr9 124938746 124939042 -17332402 + AluSg SINE Alu 1 296 -14 238 194 333 28 chr9 124939888 124940032 -17331412 - MIR SINE MIR -6 256 69 2360 99 0 0 chr9 124940194 124940498 -17330946 + AluSx SINE Alu 1 304 -8 222 292 42 0 chr9 124940705 124940777 -17330667 + L2 LINE L2 3238 3312 -1 626 265 61 35 chr9 124940907 124941137 -17330307 - MIR SINE MIR -3 259 24 527 300 6 31 chr9 124942270 124942430 -17329014 + MIR SINE MIR 63 218 -44 872 123 0 0 chr9 124942431 124942553 -17328891 - AluSg/x SINE Alu -17 295 174 315 368 52 0 chr9 124943518 124943654 -17327790 + L2 LINE L2 3102 3244 -28 775 289 25 0 chr9 124943688 124943892 -17327552 + MIR SINE MIR 53 261 -1 2070 122 0 34 chr9 124943940 124944260 -17327184 + AluSx SINE Alu 1 309 -3 201 234 117 32 chr9 124944554 124944648 -17326796 - MIR3 SINE MIR -11 197 96 241 270 200 35 chr9 124944836 124944951 -17326493 - L2 LINE L2 -4 3309 3176 1056 177 0 0 chr9 124944993 124945174 -17326270 - FRAM SINE Alu 0 176 1 276 169 51 0 chr9 124945435 124945494 -17325950 - MIR3 SINE MIR -53 155 94 307 317 161 27 chr9 124945577 124945801 -17325643 + L2 LINE L2 2806 3059 -213 827 180 118 14 chr9 124945858 124946069 -17325375 - L2 LINE L2 0 3313 3081 226 350 111 8 chr9 124946189 124946306 -17325138 + L2 LINE L2 3143 3271 -1 237 108 0 0 chr9 124947217 124947254 -17324190 + (TGG)n Simple_repeat Simple_repeat 3 39 0 453 266 82 6 chr9 124947324 124947482 -17323962 - MIR SINE MIR -63 199 30 270 308 0 92 chr9 124947572 124947757 -17323687 - L2 LINE L2 -107 3165 2998 213 318 9 19 chr9 124948217 124948324 -17323120 + C-rich Low_complexity Low_complexity 44 149 0 231 141 14 42 chr9 124948393 124948464 -17322980 + (CCG)n Simple_repeat Simple_repeat 2 70 0 1882 146 3 10 chr9 124949138 124949447 -17321997 - AluJb SINE Alu 0 312 6 2052 119 0 16 chr9 124949464 124949782 -17321662 - AluSq SINE Alu 0 313 1 2892 151 51 2 chr9 124949804 124950313 -17321131 - L1MB3 LINE L1 -1 6182 5649 387 319 43 27 chr9 124950686 124950871 -17320573 + MER5A DNA MER1_type 1 188 -1 * 475 302 13 13 chr9 124950719 124950878 -17320566 - MER5A DNA MER1_type -22 167 9 876 201 34 60 chr9 124951073 124951134 -17320310 + AluSg/x SINE Alu 85 146 -166 405 0 0 0 chr9 124951134 124951179 -17320265 + (TA)n Simple_repeat Simple_repeat 2 46 0 876 201 34 60 chr9 124951179 124951351 -17320093 + AluSg/x SINE Alu 146 312 0 232 316 31 0 chr9 124951455 124951553 -17319891 + L2 LINE L2 2713 2813 -501 250 211 241 23 chr9 124951978 124952111 -17319333 + L2 LINE L2 2906 3067 -246 202 301 60 12 chr9 124952255 124952338 -17319106 - L2 LINE L2 -212 3060 2974 388 312 23 35 chr9 124952871 124953044 -17318400 + L2 LINE L2 3117 3287 -26 324 0 0 0 chr9 124953053 124953089 -17318355 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 669 251 30 39 chr9 124953467 124953670 -17317774 - MIR SINE MIR -29 233 33 670 211 45 0 chr9 124953777 124953933 -17317511 + L1ME4a LINE L1 5955 6117 -4 311 227 67 0 chr9 124953973 124954048 -17317396 + L2 LINE L2 2671 2750 -564 1957 150 3 0 chr9 124954074 124954374 -17317070 - AluSx SINE Alu -11 301 1 258 301 45 30 chr9 124954755 124954888 -17316556 + L2 LINE L2 2902 3036 -236 747 236 22 73 chr9 124955111 124955386 -17316058 + MIR SINE MIR 1 261 -1 394 208 88 3 chr9 124955750 124955887 -17315557 - L1ME3A LINE L1 -58 6106 5940 1799 137 4 0 chr9 124956322 124956584 -17314860 + AluSx SINE Alu 6 268 -44 235 150 25 0 chr9 124956584 124956624 -17314820 + Alu SINE Alu 235 275 -28 232 246 87 0 chr9 124956655 124956724 -17314720 - L2 LINE L2 -569 2745 2671 469 311 92 0 chr9 124956744 124956940 -17314504 - MIR SINE MIR -42 220 7 189 271 14 0 chr9 124956956 124957026 -17314418 - L2 LINE L2 -654 2660 2590 227 271 0 17 chr9 124957719 124957778 -17313666 + GA-rich Low_complexity Low_complexity 3 60 0 797 186 81 23 chr9 124957865 124958037 -17313407 - MER58A DNA MER1_type 0 224 43 2050 116 3 0 chr9 124958039 124958359 -17313085 + AluSp SINE Alu 1 313 0 2193 165 52 11 chr9 124958362 124958789 -17312655 + L1MB8 LINE L1 5385 5832 -346 2100 132 0 0 chr9 124958789 124959099 -17312345 + AluSx SINE Alu 1 310 -2 2193 165 52 11 chr9 124959099 124959114 -17312330 + L1MB8 LINE L1 5832 5845 -333 1421 228 67 17 chr9 124959100 124959561 -17311883 + HAL1 LINE L1 1284 1767 -740 * 1430 161 89 54 chr9 124959574 124959795 -17311649 + L1MB8 LINE L1 5794 6035 -143 2156 88 0 36 chr9 124959795 124960101 -17311343 + AluSc SINE Alu 1 295 -14 1430 161 89 54 chr9 124960101 124960251 -17311193 + L1MB8 LINE L1 6035 6178 0 401 210 127 140 chr9 124960316 124960417 -17311027 + MIR SINE MIR 37 138 -124 811 143 8 16 chr9 124960417 124960543 -17310901 + FLAM_C SINE Alu 1 125 -8 401 210 127 140 chr9 124960543 124960670 -17310774 + MIR SINE MIR 138 262 0 * 420 303 16 64 chr9 124960637 124960825 -17310619 - MIR SINE MIR -83 179 1 189 320 27 68 chr9 124960829 124960933 -17310511 + MIR3 SINE MIR 60 158 -50 2235 117 26 54 chr9 124960933 124960975 -17310469 - THE1C LTR MaLR 0 375 333 2347 91 0 0 chr9 124960975 124961282 -17310162 + AluSg SINE Alu 1 307 -3 2235 117 26 54 chr9 124961282 124961625 -17309819 - THE1C LTR MaLR -42 333 1 189 320 27 68 chr9 124961625 124961667 -17309777 + MIR3 SINE MIR 158 200 -8 347 342 101 34 chr9 124962394 124963244 -17308200 - L2 LINE L2 -38 3234 2325 248 262 0 0 chr9 124964792 124964853 -17306591 + L2 LINE L2 2995 3055 -217 203 351 37 45 chr9 124965023 124965157 -17306287 - MIR SINE MIR -15 247 115 365 242 161 57 chr9 124965874 124966122 -17305322 + L2 LINE L2 2966 3239 -33 323 328 70 0 chr9 124966293 124966421 -17305023 - MIR SINE MIR -95 167 31 203 345 101 7 chr9 124966695 124966843 -17304601 + MIR SINE MIR 100 261 -1 238 246 0 46 chr9 124967585 124967650 -17303794 - MIR SINE MIR -74 188 127 4365 82 11 0 chr9 124968100 124968648 -17302796 - MER41A LTR ERV1 0 554 1 336 320 126 0 chr9 124968648 124968823 -17302621 - L2 LINE L2 -223 3049 2853 1978 148 10 0 chr9 124969310 124969608 -17301836 + AluJb SINE Alu 3 303 -9 282 315 11 11 chr9 124969618 124969710 -17301734 + MIR SINE MIR 39 130 -78 329 250 19 19 chr9 124970040 124970144 -17301300 + (TCTCTG)n Simple_repeat Simple_repeat 6 109 0 186 208 0 0 chr9 124970193 124970246 -17301198 + (TCTCTG)n Simple_repeat Simple_repeat 4 56 0 198 332 144 14 chr9 124970792 124971084 -17300360 + L2 LINE L2 2836 3165 -107 185 260 135 21 chr9 124971587 124971683 -17299761 + MIR3 SINE MIR 87 193 -15 383 226 55 75 chr9 124971911 124971990 -17299454 + MIR SINE MIR 14 90 -172 707 215 177 0 chr9 124971990 124972176 -17299268 - MER20 DNA MER1_type 0 219 1 383 226 55 75 chr9 124972176 124972242 -17299202 + MIR SINE MIR 90 156 -106 461 286 29 41 chr9 124972265 124972436 -17299008 - MIR SINE MIR -21 241 73 2851 73 22 3 chr9 124972441 124972809 -17298635 - THE1C LTR MaLR 0 375 1 222 227 93 13 chr9 124972872 124972947 -17298497 + MIR SINE MIR 180 260 -2 889 120 0 8 chr9 124973043 124973176 -17298268 + FLAM_C SINE Alu 2 133 0 193 306 0 0 chr9 124973239 124973311 -17298133 - MIR SINE MIR -59 149 78 230 296 9 78 chr9 124973530 124973645 -17297799 + Charlie8 DNA MER1_type 60 166 -2251 1077 224 39 24 chr9 124973657 124973912 -17297532 + MIR SINE MIR 4 262 0 343 150 0 0 chr9 124973921 124973981 -17297463 - Alu SINE Alu -5 297 238 433 118 29 0 chr9 124974082 124974150 -17297294 - AluJ/FLAM SINE Alu -241 71 2 248 274 16 0 chr9 124974215 124974277 -17297167 + Charlie8 DNA MER1_type 201 263 -2154 267 193 53 0 chr9 124974341 124974398 -17297046 + MIR SINE MIR 81 140 -68 1125 202 43 0 chr9 124974412 124974645 -17296799 + L1MB7 LINE L1 5856 6098 -86 1239 149 72 43 chr9 124974645 124974675 -17296769 - Tigger3(Golem) DNA MER2_type 0 3028 3000 2338 95 0 0 chr9 124974675 124974979 -17296465 + AluSx SINE Alu 1 304 -8 1239 149 72 43 chr9 124974979 124975183 -17296261 - Tigger3(Golem) DNA MER2_type -28 3000 2787 188 231 0 19 chr9 124977349 124977401 -17294043 - MIR SINE MIR -144 118 68 273 214 0 0 chr9 124978279 124978343 -17293101 - MIR3 SINE MIR -41 167 103 307 319 64 5 chr9 124978705 124978893 -17292551 + L2 LINE L2 1932 2130 -1184 2234 107 0 3 chr9 124979048 124979356 -17292088 - AluSx SINE Alu 0 312 6 228 325 56 58 chr9 124979767 124980145 -17291299 + L2 LINE L2 2489 2865 -449 230 279 0 68 chr9 124981781 124981928 -17289516 + GA-rich Low_complexity Low_complexity 2 138 0 228 35 0 0 chr9 124982123 124982152 -17289292 + (CCG)n Simple_repeat Simple_repeat 3 31 0 233 291 49 17 chr9 124982408 124982542 -17288902 + MIR SINE MIR 7 143 -65 208 303 0 13 chr9 124983672 124983748 -17287696 + C-rich Low_complexity Low_complexity 3 77 0 536 281 7 0 chr9 124984138 124984273 -17287171 + MIR SINE MIR 13 148 -114 230 327 64 24 chr9 124984567 124984721 -17286723 - MIR SINE MIR -51 157 6 377 296 136 6 chr9 124985116 124985278 -17286166 + MIR SINE MIR 74 256 -6 1513 180 25 46 chr9 124985455 124985782 -17285662 + MER33 DNA MER1_type 1 320 -4 651 249 26 57 chr9 124986364 124986593 -17284851 - L2 LINE L2 0 3313 3092 219 339 124 22 chr9 124986597 124986871 -17284573 + L2 LINE L2 2631 2932 -382 406 223 107 0 chr9 124987382 124987485 -17283959 + MIR SINE MIR 30 143 -65 255 167 181 14 chr9 124987895 124987967 -17283477 + MIR3 SINE MIR 13 96 -112 646 236 19 31 chr9 124988384 124988545 -17282899 - MIR SINE MIR -72 190 32 339 329 42 21 chr9 124989306 124989449 -17281995 + MIR SINE MIR 53 198 -64 847 296 8 35 chr9 124989617 124989877 -17281567 + MIR SINE MIR 9 261 -1 293 314 190 0 chr9 124990029 124990166 -17281278 + MIR3 SINE MIR 35 197 -11 284 344 0 0 chr9 124990621 124990717 -17280727 - MIR SINE MIR -77 185 90 1861 157 3 0 chr9 124990936 124991236 -17280208 - AluJb SINE Alu -11 301 1 550 309 56 53 chr9 124991378 124991907 -17279537 - L1MC4a LINE L1 -526 5595 5324 2356 71 0 0 chr9 124991907 124992202 -17279242 - AluSg SINE Alu -15 295 1 550 309 56 53 chr9 124992202 124992245 -17279199 - L1MC4a LINE L1 -797 5324 5283 2043 128 6 6 chr9 124992576 124992888 -17278556 - AluSx SINE Alu 0 312 1 385 284 37 22 chr9 124993127 124993261 -17278183 - MIR3 SINE MIR -24 184 49 314 287 74 19 chr9 124993950 124994058 -17277386 - L2 LINE L2 -3 3310 3197 796 279 98 43 chr9 124994467 124994887 -17276557 + L2 LINE L2 2870 3312 -1 563 193 9 28 chr9 124995013 124995026 -17276418 + MER5B DNA MER1_type 65 77 -101 2066 120 3 0 chr9 124995026 124995325 -17276119 - AluSx SINE Alu -12 300 1 563 193 9 28 chr9 124995325 124995420 -17276024 + MER5B DNA MER1_type 77 171 -7 848 247 16 65 chr9 124996046 124996293 -17275151 - MIR SINE MIR -27 235 1 648 286 184 20 chr9 124996540 124996931 -17274513 - L2 LINE L2 -494 2820 2366 332 212 118 35 chr9 124997448 124997533 -17273911 + MER5A DNA MER1_type 15 106 -83 371 248 147 9 chr9 124997569 124997678 -17273766 + MIR SINE MIR 18 141 -121 834 198 17 6 chr9 124997684 124997856 -17273588 + MER5B DNA MER1_type 3 176 -2 585 295 40 20 chr9 124997872 124998072 -17273372 + MIR SINE MIR 19 222 -40 334 282 40 60 chr9 124998498 124998647 -17272797 - MIR3 SINE MIR -3 205 60 450 283 84 98 chr9 124999858 125000215 -17271229 - L2 LINE L2 0 3272 2921 212 326 33 22 chr9 125000360 125000452 -17270992 - MIR SINE MIR -168 94 2 199 204 111 0 chr9 125000742 125000796 -17270648 - MIR SINE MIR -64 144 85 292 275 174 27 chr9 125000912 125001061 -17270383 - MIR SINE MIR -51 211 41 318 130 0 0 chr9 125001200 125001246 -17270198 + Alu SINE Alu 1 46 -253 1076 135 18 0 chr9 125001452 125001622 -17269822 + AluSg/x SINE Alu 130 302 -10 652 156 0 0 chr9 125001622 125001718 -17269726 - AluJ/FLAM SINE Alu -213 99 4 1493 183 26 0 chr9 125002077 125002345 -17269099 + AluJo SINE Alu 1 275 -37 285 355 45 19 chr9 125002397 125002552 -17268892 - L2 LINE L2 -468 2846 2688 2372 75 0 13 chr9 125003073 125003381 -17268063 - AluY SINE Alu -7 304 1 22 0 0 0 chr9 125004566 125004588 -17266856 + AT_rich Low_complexity Low_complexity 1 22 0 2012 125 3 0 chr9 125005131 125005428 -17266016 + AluSx SINE Alu 1 298 -14 591 280 40 61 chr9 125005549 125005597 -17265847 + L1ME4a LINE L1 5534 5581 -540 2152 84 40 3 chr9 125005597 125005893 -17265551 + AluY SINE Alu 2 308 -3 591 280 40 61 chr9 125005893 125006143 -17265301 + L1ME4a LINE L1 5581 5825 -296 2128 110 0 7 chr9 125006143 125006451 -17264993 + AluSx SINE Alu 1 306 -6 591 280 40 61 chr9 125006451 125006547 -17264897 + L1ME4a LINE L1 5825 5921 -200 704 301 72 63 chr9 125006649 125007124 -17264320 + MLT1K LTR MaLR 2 480 -108 222 184 0 0 chr9 125007461 125007499 -17263945 + L2 LINE L2 3190 3227 -86 235 213 0 33 chr9 125007506 125007567 -17263877 + L1M4 LINE L1 4534 4592 -1554 185 277 200 0 chr9 125007609 125007674 -17263770 - L2 LINE L2 -13 3300 3223 284 289 152 54 chr9 125007692 125008212 -17263232 - L1M4 LINE L1 -1611 4535 3965 326 338 134 30 chr9 125008259 125008433 -17263011 - L1M4 LINE L1 -2254 3892 3693 2183 90 13 3 chr9 125008433 125008743 -17262701 - AluSp SINE Alu 0 313 1 326 338 134 30 chr9 125008743 125008769 -17262675 - L1M4 LINE L1 -2453 3693 3671 21 0 0 0 chr9 125009082 125009103 -17262341 + AT_rich Low_complexity Low_complexity 1 21 0 228 376 12 0 chr9 125009336 125009421 -17262023 - MIR SINE MIR -103 105 20 198 233 137 41 chr9 125009605 125009678 -17261766 - MIR SINE MIR -70 192 113 523 289 57 44 chr9 125009684 125009912 -17261532 + MIR SINE MIR 32 262 0 256 344 108 57 chr9 125010093 125010465 -17260979 + L2 LINE L2 2462 2852 -462 184 239 97 124 chr9 125011148 125011236 -17260208 + MIR SINE MIR 122 208 -54 2181 86 13 0 chr9 125011236 125011539 -17259905 + AluY SINE Alu 1 307 -4 184 239 97 124 chr9 125011539 125011563 -17259881 + MIR SINE MIR 208 231 -31 212 302 34 68 chr9 125011636 125011841 -17259603 + L2 LINE L2 2718 2915 -399 478 272 64 0 chr9 125011878 125012003 -17259441 + MIR SINE MIR 6 138 -124 211 309 0 0 chr9 125012016 125012071 -17259373 + (TG)n Simple_repeat Simple_repeat 2 56 0 336 236 0 91 chr9 125012071 125012181 -17259263 + L1MC4 LINE L1 6604 6703 -1339 441 260 10 0 chr9 125012189 125012293 -17259151 + MIR SINE MIR 158 262 0 248 388 12 0 chr9 125012331 125012411 -17259033 + L2 LINE L2 3106 3186 -86 398 279 39 90 chr9 125013540 125013773 -17257671 - L2 LINE L2 0 3313 3093 405 86 0 0 chr9 125013907 125013965 -17257479 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 1296 201 0 8 chr9 125013967 125014230 -17257214 - AluJo SINE Alu 0 312 52 218 338 213 44 chr9 125014250 125014410 -17257034 - L2 LINE L2 -8 3264 3078 203 300 0 0 chr9 125014471 125014521 -17256923 - MIR SINE MIR -67 141 92 282 308 120 0 chr9 125014687 125014804 -17256640 - MIR SINE MIR -67 195 65 359 267 20 82 chr9 125014856 125015002 -17256442 - MIR SINE MIR -124 138 2 323 258 221 20 chr9 125015437 125015639 -17255805 + MIR SINE MIR 25 257 -5 2781 180 73 19 chr9 125015743 125016366 -17255078 + L1ME1 LINE L1 5521 6334 0 608 263 100 21 chr9 125016572 125016762 -17254682 - MIR SINE MIR -30 232 28 340 279 95 72 chr9 125016794 125017016 -17254428 - L2 LINE L2 -184 3088 2862 189 0 0 0 chr9 125017220 125017241 -17254203 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 825 174 0 19 chr9 125017257 125017418 -17254026 - AluJb SINE Alu -23 289 132 236 259 12 0 chr9 125017556 125017637 -17253807 + GA-rich Low_complexity Low_complexity 2 83 0 273 379 85 18 chr9 125017637 125018130 -17253314 - L2 LINE L2 -641 2673 2148 190 262 164 0 chr9 125018297 125018358 -17253086 - L2 LINE L2 0 3272 3202 1639 174 0 49 chr9 125018641 125018968 -17252476 + AluJb SINE Alu 1 311 -1 448 208 0 134 chr9 125019071 125019220 -17252224 + L2 LINE L2 3143 3271 -1 2704 99 6 3 chr9 125019271 125019634 -17251810 - THE1B LTR MaLR 0 364 1 316 235 88 39 chr9 125019758 125019860 -17251584 + MIR3 SINE MIR 15 121 -87 2128 77 24 27 chr9 125020421 125020718 -17250726 - AluSc SINE Alu -13 296 1 1131 118 24 0 chr9 125020718 125020887 -17250557 - AluSg/x SINE Alu -9 301 129 330 310 163 0 chr9 125020963 125021058 -17250386 + MIR SINE MIR 49 127 -135 2231 182 80 23 chr9 125021058 125021536 -17249908 - MLT1D LTR MaLR 0 505 1 330 310 163 0 chr9 125021536 125021624 -17249820 + MIR SINE MIR 127 262 0 456 321 0 15 chr9 125021858 125021992 -17249452 - MIR SINE MIR -60 148 17 716 230 12 51 chr9 125022097 125022136 -17249308 - MIR SINE MIR 0 262 223 3178 148 14 14 chr9 125022136 125022656 -17248788 - MLT2B1 LTR ERVL 0 520 1 716 230 12 51 chr9 125022656 125022813 -17248631 - MIR SINE MIR -39 223 76 609 255 48 80 chr9 125023253 125023381 -17248063 + MIR SINE MIR 20 138 -124 2137 94 10 3 chr9 125023381 125023680 -17247764 + AluSx SINE Alu 1 301 -11 609 255 48 80 chr9 125023680 125023802 -17247642 + MIR SINE MIR 138 262 0 1212 53 13 0 chr9 125024199 125024351 -17247093 + L1PA7 LINE L1 5998 6151 -3 195 261 130 43 chr9 125024493 125024585 -17246859 + MIR SINE MIR 20 119 -89 264 304 0 22 chr9 125024598 125024690 -17246754 + MIR SINE MIR 20 109 -153 577 319 166 43 chr9 125024693 125025311 -17246133 + L2 LINE L2 1997 2538 -734 1668 127 38 57 chr9 125025311 125025625 -17245819 - AluJo SINE Alu -4 308 1 577 319 166 43 chr9 125025625 125026130 -17245314 + L2 LINE L2 2538 3261 -11 323 312 64 0 chr9 125026201 125026310 -17245134 - L2 LINE L2 -7 3265 3150 213 159 0 0 chr9 125026797 125026841 -17244603 + (TTAGGG)n Simple_repeat Simple_repeat 2 45 0 276 232 18 0 chr9 125026946 125027002 -17244442 - L3 LINE CR1 -4 1573 1517 617 210 204 19 chr9 125027162 125027324 -17244120 + MIR SINE MIR 59 250 -12 704 293 42 73 chr9 125028260 125028669 -17242775 - L2 LINE L2 0 3313 2918 264 231 15 0 chr9 125028944 125029009 -17242435 - MER4-int LTR ERV1 -5438 1160 1095 2501 36 0 13 chr9 125029197 125029502 -17241942 + AluY SINE Alu 1 301 -10 516 219 0 0 chr9 125029710 125029815 -17241629 + MER103 DNA DNA 1 105 -61 304 268 71 18 chr9 125029817 125029929 -17241515 + L2 LINE L2 3117 3234 -79 2053 111 3 3 chr9 125029962 125030260 -17241184 + AluSg SINE Alu 1 298 -12 1033 240 325 0 chr9 125030292 125030797 -17240647 - LTR50 LTR ERVL -111 684 16 1957 120 0 0 chr9 125030797 125031073 -17240371 - AluSq SINE Alu -13 300 25 776 191 0 0 chr9 125031443 125031569 -17239875 + FLAM_A SINE Alu 1 126 -7 1985 114 4 0 chr9 125031571 125031871 -17239573 + AluSx SINE Alu 1 301 0 996 260 21 41 chr9 125031898 125032237 -17239207 - ERVL LTR ERVL -321 5443 5112 330 343 111 37 chr9 125032323 125032794 -17238650 - L2 LINE L2 -143 3129 2615 601 218 52 81 chr9 125032794 125033005 -17238439 + MIR3 SINE MIR 2 206 -2 468 217 217 54 chr9 125033527 125033639 -17237805 + MER112 DNA MER1_type 4 96 -164 2332 103 0 0 chr9 125033639 125033950 -17237494 - AluSx SINE Alu -1 311 1 468 217 217 54 chr9 125033950 125034058 -17237386 + MER112 DNA MER1_type 96 260 0 446 253 83 70 chr9 125034084 125034313 -17237131 + L2 LINE L2 3032 3263 -9 215 230 186 35 chr9 125034726 125034839 -17236605 - MIR SINE MIR -63 145 16 668 313 18 18 chr9 125035007 125035231 -17236213 + MIR SINE MIR 7 230 -32 275 274 91 87 chr9 125035795 125035833 -17235611 - MIR SINE MIR -34 228 192 2227 100 0 0 chr9 125035833 125036132 -17235312 + AluSx SINE Alu 1 299 -13 275 274 91 87 chr9 125036132 125036301 -17235143 - MIR SINE MIR -70 192 20 293 259 62 0 chr9 125036370 125036451 -17234993 + L2 LINE L2 3186 3271 -1 321 223 130 45 chr9 125037481 125037640 -17233804 - MIR SINE MIR -62 146 12 440 295 33 16 chr9 125037792 125037975 -17233469 + L1ME4a LINE L1 5707 5892 -229 902 228 88 9 chr9 125037977 125038041 -17233403 - MIR SINE MIR 0 262 204 204 40 0 0 chr9 125038041 125038066 -17233378 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 902 228 88 9 chr9 125038066 125038216 -17233228 - MIR SINE MIR -58 204 31 2349 70 0 10 chr9 125038420 125038587 -17232857 - AluY SINE Alu -12 299 135 2314 59 3 16 chr9 125038587 125038890 -17232554 - AluY SINE Alu -12 299 1 2349 70 0 10 chr9 125038890 125039024 -17232420 - AluY SINE Alu -176 135 1 415 293 7 33 chr9 125039084 125039234 -17232210 - MIR3 SINE MIR -61 147 2 530 306 29 6 chr9 125039571 125039741 -17231703 - MIR SINE MIR -88 174 1 603 258 24 79 chr9 125040282 125040534 -17230910 + MIR SINE MIR 16 253 -9 402 235 112 35 chr9 125041596 125041766 -17229678 + MIR SINE MIR 12 194 -68 2268 113 0 0 chr9 125042279 125042576 -17228868 + AluSx SINE Alu 8 299 -13 1448 164 35 31 chr9 125042681 125042968 -17228476 + AluJo SINE Alu 1 288 -24 2611 63 0 0 chr9 125042968 125043270 -17228174 - AluY SINE Alu -9 302 1 182 273 202 0 chr9 125044728 125044827 -17226617 + MIR SINE MIR 30 148 -114 240 281 116 16 chr9 125045444 125045565 -17225879 - MIR SINE MIR -128 134 2 333 295 240 10 chr9 125045620 125045820 -17225624 - MIR SINE MIR -15 247 2 200 329 59 0 chr9 125046294 125046379 -17225065 - L2 LINE L2 0 3313 3224 2472 75 0 0 chr9 125046670 125046963 -17224481 + AluSc SINE Alu 2 294 -15 762 256 114 10 chr9 125047618 125047907 -17223537 - L2 LINE L2 0 3313 2995 322 306 51 0 chr9 125047986 125048084 -17223360 - L2 LINE L2 -36 3236 3134 2306 104 0 3 chr9 125048102 125048399 -17223045 + AluSx SINE Alu 1 296 -16 3295 163 91 6 chr9 125048565 125049245 -17222199 - L1MC3 LINE L1 -10 7775 7038 1502 183 57 14 chr9 125049323 125049623 -17221821 - AluJb SINE Alu 0 312 1 2398 85 3 0 chr9 125049700 125049994 -17221450 - AluSc SINE Alu -13 296 2 22 0 0 0 chr9 125050001 125050023 -17221421 + AT_rich Low_complexity Low_complexity 1 22 0 340 307 130 31 chr9 125050103 125050295 -17221149 - L1ME4a LINE L1 -115 6006 5796 219 151 283 0 chr9 125050319 125050372 -17221072 + L2 LINE L2 3246 3313 0 235 221 15 29 chr9 125050453 125050521 -17220923 - L1ME4a LINE L1 -457 5664 5598 336 365 82 0 chr9 125052015 125052283 -17219161 + L1ME2 LINE L1 5649 5940 -224 464 321 18 12 chr9 125052524 125052692 -17218752 + MIR SINE MIR 20 188 -74 453 254 115 24 chr9 125053466 125053631 -17217813 + MER5A DNA MER1_type 7 186 -3 258 251 100 0 chr9 125053688 125053789 -17217655 - MIR SINE MIR -62 200 81 1389 34 0 34 chr9 125053825 125054004 -17217440 + MER107 DNA MER1_type 25 197 0 2275 115 0 0 chr9 125054120 125054416 -17217028 + AluSx SINE Alu 1 296 -16 220 254 136 9 chr9 125054429 125054539 -17216905 + MIR SINE MIR 129 252 -10 184 239 0 22 chr9 125054508 125054554 -17216890 + L2 LINE L2 3267 3311 -2 * 190 236 83 14 chr9 125056340 125056412 -17215032 + L2 LINE L2 3158 3234 -38 413 310 17 0 chr9 125056619 125056735 -17214709 + MER117 DNA MER1_type 80 197 0 572 189 47 32 chr9 125058220 125058397 -17213047 + MIR SINE MIR 17 200 -62 330 281 70 13 chr9 125058433 125058630 -17212814 - MIR3 SINE MIR -52 210 3 775 284 45 0 chr9 125059067 125059289 -17212155 - MIR SINE MIR -1 261 30 185 292 67 0 chr9 125059390 125059479 -17211965 + MIR3 SINE MIR 86 180 -28 267 273 50 25 chr9 125060174 125060295 -17211149 + L2 LINE L2 2851 2974 -298 193 211 96 0 chr9 125060420 125060472 -17210972 + L2 LINE L2 3200 3256 -57 218 304 45 42 chr9 125060516 125060661 -17210783 + MIR SINE MIR 37 184 -61 224 239 90 0 chr9 125060747 125060814 -17210630 + MIR SINE MIR 77 149 -59 352 279 93 31 chr9 125061152 125061313 -17210131 + MER5B DNA MER1_type 8 178 0 416 318 85 27 chr9 125061631 125061889 -17209555 + L2 LINE L2 3000 3272 0 2483 78 0 10 chr9 125061914 125062222 -17209222 + AluSq SINE Alu 1 305 -8 200 234 0 21 chr9 125062245 125062292 -17209152 + MIR SINE MIR 103 148 -60 194 281 18 0 chr9 125063161 125063218 -17208226 + MIR SINE MIR 43 100 -108 1912 65 18 0 chr9 125063245 125063474 -17207970 - AluY SINE Alu -17 294 62 942 56 0 0 chr9 125063474 125063582 -17207862 - AluY SINE Alu -203 108 1 568 254 64 84 chr9 125063771 125063935 -17207509 + L2 LINE L2 2971 3137 -176 2053 144 0 3 chr9 125063935 125064227 -17207217 - AluSx SINE Alu -21 291 1 568 254 64 84 chr9 125064227 125064408 -17207036 + L2 LINE L2 3137 3309 -4 205 318 23 34 chr9 125064575 125064663 -17206781 + MIR SINE MIR 71 157 -105 646 273 53 11 chr9 125065497 125065684 -17205760 - MIR SINE MIR -66 196 2 310 292 263 11 chr9 125065986 125066267 -17205177 + L2 LINE L2 2962 3313 0 456 221 11 0 chr9 125066275 125066370 -17205074 - MIR SINE MIR -87 175 80 266 318 141 10 chr9 125066544 125066742 -17204702 + L2 LINE L2 3083 3306 -7 26 0 0 0 chr9 125067604 125067630 -17203814 + GC_rich Low_complexity Low_complexity 1 26 0 220 172 32 0 chr9 125067968 125068030 -17203414 - MIR SINE MIR -62 146 109 250 282 9 36 chr9 125068200 125068310 -17203134 + L1ME4a LINE L1 5965 6071 -50 306 172 25 74 chr9 125068443 125068565 -17202879 - L1ME4a LINE L1 -21 6100 5985 296 290 153 0 chr9 125068615 125068739 -17202705 + L1ME4a LINE L1 5956 6098 -23 273 57 0 0 chr9 125069411 125069446 -17201998 + (GTATG)n Simple_repeat Simple_repeat 3 37 0 311 241 222 0 chr9 125069476 125069584 -17201860 + MIR SINE MIR 72 203 -59 361 201 78 71 chr9 125069747 125069901 -17201543 - MIR3 SINE MIR -8 200 46 206 147 0 0 chr9 125070064 125070098 -17201346 + L3 LINE CR1 1387 1420 -157 210 273 30 0 chr9 125070178 125070244 -17201200 - MIR SINE MIR -98 164 97 298 206 54 11 chr9 125070817 125070909 -17200535 + L1ME4a LINE L1 6013 6108 -13 502 232 282 0 chr9 125070961 125071142 -17200302 - MIR SINE MIR 0 262 31 226 274 32 63 chr9 125071206 125071301 -17200143 + MIR SINE MIR 71 162 -100 182 291 211 40 chr9 125071410 125071633 -17199811 + L2 LINE L2 3010 3270 -2 764 339 51 5 chr9 125071684 125072073 -17199371 + L2 LINE L2 2399 2805 -509 180 352 33 0 chr9 125073026 125073117 -17198327 - MIR SINE MIR -88 174 81 244 229 82 0 chr9 125074237 125074298 -17197146 + L2 LINE L2 3246 3311 -2 344 259 97 75 chr9 125075222 125075450 -17195994 + MIR SINE MIR 14 246 -16 2119 117 3 3 chr9 125077378 125077689 -17193755 - AluSc SINE Alu 0 311 1 247 211 13 40 chr9 125078062 125078138 -17193306 + (CA)n Simple_repeat Simple_repeat 1 74 0 214 340 31 21 chr9 125080026 125080123 -17191321 - MIR SINE MIR -112 150 53 224 219 0 0 chr9 125081374 125081415 -17190029 + GA-rich Low_complexity Low_complexity 4 44 0 507 291 24 12 chr9 125085368 125085533 -17185911 - Charlie8 DNA MER1_type -2138 279 113 219 262 36 12 chr9 125085762 125085846 -17185598 + L2 LINE L2 2461 2546 -768 605 337 146 13 chr9 125086462 125086913 -17184531 + L2 LINE L2 2461 2971 -343 870 181 44 0 chr9 125087603 125087763 -17183681 + AluJo SINE Alu 120 286 -26 216 239 0 30 chr9 125090681 125090772 -17180672 + (CCCCAG)n Simple_repeat Simple_repeat 1 88 0 339 182 0 0 chr9 125090807 125090884 -17180560 + CT-rich Low_complexity Low_complexity 1 77 0 215 233 0 22 chr9 125090974 125091064 -17180380 + (CAGA)n Simple_repeat Simple_repeat 2 89 0 546 332 20 36 chr9 125092513 125092760 -17178684 - MIR SINE MIR -12 250 8 318 106 0 0 chr9 125092786 125092833 -17178611 + (CA)n Simple_repeat Simple_repeat 1 47 0 253 188 42 0 chr9 125092892 125092940 -17178504 + MIR SINE MIR 117 166 -96 269 336 88 0 chr9 125093100 125093213 -17178231 - L2 LINE L2 -234 3038 2916 436 242 94 0 chr9 125093270 125093398 -17178046 - MIR SINE MIR 0 262 123 659 245 31 77 chr9 125093523 125093795 -17177649 + MIR SINE MIR 2 261 -1 402 228 96 18 chr9 125094065 125094233 -17177211 + MIR SINE MIR 2 187 -62 2241 111 0 22 chr9 125094257 125094573 -17176871 + AluSc SINE Alu 1 309 0 284 229 16 0 chr9 125095118 125095179 -17176265 + MIR SINE MIR 82 143 -65 634 314 29 16 chr9 125095372 125095614 -17175830 + MIR SINE MIR 18 262 0 523 268 124 71 chr9 125095817 125096227 -17175217 - L2 LINE L2 -10 3262 2831 494 296 40 11 chr9 125096291 125096467 -17174977 + MIR SINE MIR 4 184 -78 210 257 162 0 chr9 125096596 125096670 -17174774 + L2 LINE L2 3019 3104 -209 25 51 0 0 chr9 125096946 125096985 -17174459 + AT_rich Low_complexity Low_complexity 1 39 0 1948 128 20 13 chr9 125097036 125097202 -17174242 - AluSx SINE Alu -12 300 130 2348 101 3 0 chr9 125097202 125097510 -17173934 - AluSp SINE Alu -4 309 1 1948 128 20 13 chr9 125097510 125097641 -17173803 - AluSx SINE Alu -182 130 1 206 164 0 60 chr9 125097659 125097726 -17173718 + (TA)n Simple_repeat Simple_repeat 1 63 0 275 346 112 28 chr9 125097749 125098035 -17173409 - L2 LINE L2 -814 2500 2191 423 198 83 7 chr9 125099071 125099254 -17172190 + MLT1K LTR MaLR 356 585 -3 1177 216 52 33 chr9 125099550 125099855 -17171589 - MER58B DNA MER1_type -1 340 30 610 263 34 17 chr9 125099857 125100032 -17171412 + MIR3 SINE MIR 24 201 -7 1582 276 82 8 chr9 125100037 125100822 -17170622 - L2 LINE L2 -5 3308 2458 876 107 0 0 chr9 125101044 125101165 -17170279 - AluSg/x SINE Alu -11 301 181 182 278 42 28 chr9 125104065 125104137 -17167307 - MIR SINE MIR -12 250 178 589 259 75 23 chr9 125104189 125104363 -17167081 - MIR SINE MIR -67 195 13 448 267 109 50 chr9 125104430 125104494 -17166950 - MIR SINE MIR 0 262 203 1748 169 0 42 chr9 125104494 125104656 -17166788 - AluJo SINE Alu -18 294 150 2316 89 0 10 chr9 125104656 125104958 -17166486 - AluSc SINE Alu -10 299 1 1748 169 0 42 chr9 125104958 125105102 -17166342 - AluJo SINE Alu -162 150 1 448 267 109 50 chr9 125105102 125105239 -17166205 - MIR SINE MIR -59 203 49 285 329 25 11 chr9 125106299 125106464 -17164980 + MIR SINE MIR 12 262 0 205 73 24 24 chr9 125106494 125106535 -17164909 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 22 0 0 0 chr9 125107495 125107517 -17163927 + AT_rich Low_complexity Low_complexity 1 22 0 1877 136 0 45 chr9 125107526 125107835 -17163609 + AluJb SINE Alu 1 295 -17 922 127 0 0 chr9 125108020 125108138 -17163306 - FLAM_C SINE Alu -15 118 1 24 0 0 0 chr9 125109024 125109048 -17162396 + AT_rich Low_complexity Low_complexity 1 24 0 2187 100 3 16 chr9 125109605 125109915 -17161529 - AluSc SINE Alu -3 306 1 380 226 150 128 chr9 125109915 125110149 -17161295 + MIR SINE MIR 20 258 -4 232 244 0 0 chr9 125110731 125110776 -17160668 - L2 LINE L2 -7 3306 3262 24 32 0 0 chr9 125110935 125110966 -17160478 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr9 125110994 125111018 -17160426 + AT_rich Low_complexity Low_complexity 1 24 0 382 249 77 66 chr9 125111039 125111220 -17160224 - MIR SINE MIR -71 191 9 1894 168 13 0 chr9 125111261 125111565 -17159879 + AluJb SINE Alu 1 308 -4 1803 176 3 0 chr9 125111619 125111914 -17159530 + AluJb SINE Alu 1 296 -16 300 269 148 35 chr9 125112082 125112333 -17159111 + L1P1 LINE L1 5550 5828 -325 260 200 48 112 chr9 125112331 125112456 -17158988 - L1ME3 LINE L1 -1 6161 6045 * 394 257 73 44 chr9 125112516 125112722 -17158722 + L1ME4a LINE L1 5906 6117 -4 1316 180 78 20 chr9 125112733 125113023 -17158421 - AluJo SINE Alu 0 317 13 227 326 122 0 chr9 125113540 125113638 -17157806 - L2 LINE L2 -54 3218 3109 198 0 0 0 chr9 125114265 125114287 -17157157 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr9 125115549 125115571 -17155873 + AT_rich Low_complexity Low_complexity 1 22 0 2409 92 0 7 chr9 125115574 125115879 -17155565 + AluSx SINE Alu 1 303 -9 228 297 48 72 chr9 125116528 125116737 -17154707 - L2 LINE L2 -31 3282 3079 251 233 67 121 chr9 125117280 125117520 -17153924 + L2 LINE L2 2301 2527 -787 1123 121 30 138 chr9 125117638 125117902 -17153542 + AluJb SINE Alu 85 323 0 203 316 40 13 chr9 125118657 125118733 -17152711 - MIR3 SINE MIR -5 203 126 1136 75 0 0 chr9 125118908 125119054 -17152390 - AluY SINE Alu -14 297 152 1701 54 0 36 chr9 125119055 125119279 -17152165 - AluY SINE Alu -95 216 1 2099 118 0 4 chr9 125120089 125120395 -17151049 - AluSc SINE Alu 0 307 3 1410 132 149 39 chr9 125120488 125120769 -17150675 + AluJo SINE Alu 1 312 0 2024 109 0 0 chr9 125121558 125121824 -17149620 - AluSx SINE Alu -46 266 1 2061 143 10 0 chr9 125121896 125122203 -17149241 + AluSx SINE Alu 2 311 -1 224 284 30 15 chr9 125122399 125122466 -17148978 + MIR SINE MIR 86 153 -55 292 140 60 0 chr9 125122739 125122789 -17148655 + MIR3 SINE MIR 152 204 -4 528 290 77 0 chr9 125123854 125124023 -17147421 + MIR SINE MIR 80 261 -1 879 228 63 15 chr9 125124070 125124276 -17147168 + MIR SINE MIR 47 262 0 235 267 103 35 chr9 125124350 125124403 -17147041 + MIR SINE MIR 16 64 -144 2088 142 0 3 chr9 125124403 125124714 -17146730 - AluSx SINE Alu -1 311 2 235 267 103 35 chr9 125124714 125124776 -17146668 + MIR SINE MIR 64 139 -69 606 230 150 29 chr9 125125288 125125562 -17145882 - L2 LINE L2 -2 3311 3005 303 261 120 0 chr9 125125648 125125740 -17145704 + MIR SINE MIR 12 114 -148 422 282 60 7 chr9 125125843 125125992 -17145452 + L2 LINE L2 3152 3308 -5 202 317 50 30 chr9 125125992 125126093 -17145351 + MIR SINE MIR 95 197 -65 492 324 74 11 chr9 125127029 125127205 -17144239 - MIR SINE MIR -72 190 4 301 307 127 39 chr9 125127255 125127410 -17144034 - MIR SINE MIR -65 143 5 284 309 136 0 chr9 125127437 125127547 -17143897 - MIR3 SINE MIR -21 187 63 578 319 49 32 chr9 125127947 125128317 -17143127 - L2 LINE L2 -27 3286 2911 2221 82 7 0 chr9 125128642 125128924 -17142520 + AluSg SINE Alu 21 304 -6 2209 99 3 7 chr9 125128928 125129230 -17142214 + AluSx SINE Alu 1 301 -11 215 265 0 0 chr9 125129251 125129300 -17142144 - MIR SINE MIR -1 261 213 667 234 0 0 chr9 125129311 125129435 -17142009 - FLAM_A SINE Alu -9 124 1 715 257 206 0 chr9 125129454 125129668 -17141776 + MIR SINE MIR 4 261 -1 496 307 20 0 chr9 125129686 125129836 -17141608 - MIR SINE MIR -102 160 8 519 234 66 0 chr9 125130380 125130517 -17140927 + MIR SINE MIR 75 220 -42 2544 44 0 3 chr9 125130714 125131010 -17140434 + AluY SINE Alu 1 295 -16 343 229 157 13 chr9 125131017 125131170 -17140274 - MIR SINE MIR 0 262 88 2068 125 3 7 chr9 125131273 125131569 -17139875 + AluSx SINE Alu 1 295 -17 502 324 102 14 chr9 125131631 125131847 -17139597 - MIR SINE MIR -20 242 8 397 252 63 31 chr9 125132461 125132620 -17138824 + MIR SINE MIR 92 255 -7 403 270 93 122 chr9 125133360 125133638 -17137806 + L2 LINE L2 3003 3272 0 306 246 116 65 chr9 125133962 125134100 -17137344 - MIR3 SINE MIR -30 178 34 1227 201 5 0 chr9 125134214 125134438 -17137006 + AluJo SINE Alu 1 225 -87 252 323 65 26 chr9 125134636 125134865 -17136579 - L1M4 LINE L1 -1156 4990 4753 1868 131 41 3 chr9 125135000 125135290 -17136154 + AluJb SINE Alu 1 301 -11 1370 261 67 30 chr9 125135391 125135854 -17135590 - L1ME3A LINE L1 -26 6213 5734 252 175 0 53 chr9 125135855 125135912 -17135532 + CT-rich Low_complexity Low_complexity 4 57 0 335 260 10 42 chr9 125135916 125136012 -17135432 - L1ME3A LINE L1 -1999 4216 4124 656 99 0 0 chr9 125136042 125136133 -17135311 + L1 LINE L1 4710 4800 -1346 486 111 14 0 chr9 125136133 125136205 -17135239 - THE1B LTR MaLR 0 364 292 798 147 0 0 chr9 125136206 125136322 -17135122 + AluSq/x SINE Alu 2 117 -195 581 275 186 9 chr9 125136326 125136364 -17135080 - L1ME3A LINE L1 -2588 3627 3597 378 0 0 0 chr9 125136364 125136406 -17135038 + (TG)n Simple_repeat Simple_repeat 2 43 0 581 275 186 9 chr9 125136406 125136818 -17134626 - L1ME3A LINE L1 -2618 3597 3097 1649 188 47 122 chr9 125136844 125137181 -17134263 - L1MA9 LINE L1 -60 6252 5976 1896 145 0 14 chr9 125137181 125137470 -17133974 + AluJb SINE Alu 1 285 -27 1649 188 47 122 chr9 125137470 125137723 -17133721 - L1MA9 LINE L1 -336 5976 5706 2163 129 0 19 chr9 125137726 125138044 -17133400 - AluSx SINE Alu 0 312 1 189 0 0 0 chr9 125138044 125138065 -17133379 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1081 268 101 38 chr9 125138072 125138123 -17133321 - L1MEc LINE L1 -3130 3085 3039 921 203 6 12 chr9 125138123 125138286 -17133158 - FRAM SINE Alu -4 162 1 1081 268 101 38 chr9 125138286 125138694 -17132750 - L1MEc LINE L1 -3176 3039 2658 1709 182 30 0 chr9 125138694 125138990 -17132454 - AluJo SINE Alu -7 305 1 1081 268 101 38 chr9 125138990 125139370 -17132074 - L1MEc LINE L1 -3557 2658 2211 2119 141 0 3 chr9 125139370 125139682 -17131762 - AluSx SINE Alu -1 311 1 1081 268 101 38 chr9 125139682 125139743 -17131701 - L1MEc LINE L1 -4004 2211 2155 954 103 91 6 chr9 125139748 125139913 -17131531 - L1MA4A LINE L1 -3 6300 6122 1025 212 112 73 chr9 125140050 125140460 -17130984 - L1ME3A LINE L1 0 6170 5745 342 277 102 6 chr9 125140505 125140671 -17130773 - HAL1 LINE L1 -953 1554 1373 2170 84 46 3 chr9 125140717 125141001 -17130443 - AluSg SINE Alu -14 296 1 360 261 8 76 chr9 125141091 125141210 -17130234 + MIR SINE MIR 65 175 -87 181 0 0 94 chr9 125141325 125141357 -17130087 + L2 LINE L2 3285 3313 0 330 368 21 7 chr9 125141713 125141857 -17129587 + MIR3 SINE MIR 2 147 -61 502 345 81 0 chr9 125141867 125142076 -17129368 - MIR SINE MIR -15 247 22 488 246 103 9 chr9 125142450 125142667 -17128777 + MIR SINE MIR 1 241 -21 243 271 149 19 chr9 125142673 125142780 -17128664 - L2 LINE L2 0 3313 3193 463 403 64 22 chr9 125144171 125144323 -17127121 - L2 LINE L2 0 3272 3128 705 240 67 35 chr9 125144323 125144577 -17126867 + MIR SINE MIR 1 262 0 463 403 64 22 chr9 125144577 125144784 -17126660 - L2 LINE L2 -144 3128 2898 500 266 86 94 chr9 125144829 125144923 -17126521 - MIR SINE MIR 0 262 169 2283 97 0 3 chr9 125144923 125145221 -17126223 - AluSg SINE Alu -11 299 3 500 266 86 94 chr9 125145221 125145382 -17126062 - MIR SINE MIR -93 169 9 342 0 0 0 chr9 125145797 125145835 -17125609 + (TTG)n Simple_repeat Simple_repeat 2 39 0 420 275 33 66 chr9 125145894 125146076 -17125368 + MER5B DNA MER1_type 2 177 -1 449 249 72 83 chr9 125146085 125146266 -17125178 + MIR SINE MIR 20 198 -64 396 250 116 9 chr9 125146274 125146386 -17125058 - MIR SINE MIR -77 185 62 381 260 26 0 chr9 125146406 125146483 -17124961 - MER81 DNA DNA -35 79 1 1338 208 28 38 chr9 125146630 125146919 -17124525 - AluJo SINE Alu -16 286 1 216 313 30 0 chr9 125146924 125146991 -17124453 + L3 LINE CR1 1506 1574 -3 771 276 20 65 chr9 125147387 125147681 -17123763 - Charlie8 DNA MER1_type -2136 281 1 621 179 8 24 chr9 125147875 125147998 -17123446 + MIR SINE MIR 26 146 -62 1810 170 0 32 chr9 125148254 125148566 -17122878 + AluJo SINE Alu 2 303 -9 974 301 87 27 chr9 125148655 125149169 -17122275 + L2 LINE L2 2759 3313 0 21 0 0 0 chr9 125150069 125150090 -17121354 + AT_rich Low_complexity Low_complexity 1 21 0 416 287 106 16 chr9 125150138 125150326 -17121118 - MIR SINE MIR -6 256 52 279 336 25 8 chr9 125150372 125150491 -17120953 - L2 LINE L2 -1 3312 3192 457 252 22 15 chr9 125150652 125150787 -17120657 - MER117 DNA MER1_type -54 143 8 319 245 85 32 chr9 125151120 125151214 -17120230 - L2 LINE L2 -4 3268 3170 1956 127 3 85 chr9 125151574 125151914 -17119530 + AluJb SINE Alu 1 312 0 202 290 87 0 chr9 125152131 125152200 -17119244 + MIR3 SINE MIR 122 196 -12 239 273 273 0 chr9 125152227 125152337 -17119107 - MARNA DNA Mariner -433 153 14 518 276 136 13 chr9 125152825 125153053 -17118391 - MIR SINE MIR -4 258 3 204 216 0 0 chr9 125153338 125153375 -17118069 + CT-rich Low_complexity Low_complexity 4 40 0 660 294 148 18 chr9 125153814 125154151 -17117293 - L2 LINE L2 -1 3312 2932 21 100 0 0 chr9 125154266 125154336 -17117108 + AT_rich Low_complexity Low_complexity 1 70 0 811 285 67 7 chr9 125154354 125154652 -17116792 - L2 LINE L2 -398 2916 2601 184 224 103 0 chr9 125154686 125154744 -17116700 + L2 LINE L2 3204 3267 -5 664 279 114 29 chr9 125154748 125155028 -17116416 - L2 LINE L2 -1 3312 3009 294 281 239 6 chr9 125155068 125155235 -17116209 - MIR SINE MIR -10 252 47 209 253 253 11 chr9 125155523 125155618 -17115826 - L2 LINE L2 0 3272 3155 415 279 22 12 chr9 125155677 125155811 -17115633 - MIR SINE MIR -61 147 13 458 311 51 17 chr9 125155868 125156045 -17115399 + MIR3 SINE MIR 23 205 -3 219 222 44 0 chr9 125156773 125156818 -17114626 - MIR SINE MIR -18 244 198 403 325 80 13 chr9 125156827 125157064 -17114380 + MIR SINE MIR 2 254 -8 322 278 22 0 chr9 125157105 125157195 -17114249 - MIR SINE MIR -112 150 59 2318 106 0 0 chr9 125157274 125157576 -17113868 - AluSx SINE Alu -10 302 1 496 234 84 30 chr9 125158236 125158403 -17113041 - MIR SINE MIR -34 228 53 29 28 0 0 chr9 125158825 125158861 -17112583 + AT_rich Low_complexity Low_complexity 1 36 0 2239 110 14 0 chr9 125158863 125159155 -17112289 + AluSg SINE Alu 1 296 -14 325 282 23 53 chr9 125159850 125159981 -17111463 - MIR SINE MIR -116 146 20 681 288 15 15 chr9 125160216 125160421 -17111023 - L1ME1 LINE L1 -5 6161 5957 1380 256 56 37 chr9 125160475 125160939 -17110505 - L2 LINE L2 -4 3309 2837 1153 153 40 0 chr9 125160939 125161116 -17110328 + AluSx SINE Alu 1 184 -128 1022 104 0 0 chr9 125161118 125161243 -17110201 - AluSq/x SINE Alu -187 126 2 1723 209 88 7 chr9 125161254 125161665 -17109779 - L2 LINE L2 -962 2352 1909 542 266 115 40 chr9 125161693 125161766 -17109678 + MIR SINE MIR 14 80 -182 936 237 149 70 chr9 125161766 125162196 -17109248 - LTR16B LTR ERVL 0 464 1 542 266 115 40 chr9 125162196 125162348 -17109096 + MIR SINE MIR 80 256 -6 271 265 36 0 chr9 125163268 125163351 -17108093 + MIR SINE MIR 79 164 -98 348 272 35 26 chr9 125163357 125163471 -17107973 - LTR16B LTR ERVL -56 408 294 2145 110 7 32 chr9 125163562 125163871 -17107573 - AluSx SINE Alu -11 301 1 4538 140 40 49 chr9 125164024 125164947 -17106497 - L1MB8 LINE L1 -37 6141 5229 33 0 0 0 chr9 125165103 125165136 -17106308 + AT_rich Low_complexity Low_complexity 1 33 0 1366 185 23 8 chr9 125165212 125165472 -17105972 - AluJo SINE Alu -13 299 36 500 259 8 10 chr9 125165544 125165681 -17105763 - MIR SINE MIR -70 138 4 360 0 0 0 chr9 125165892 125165932 -17105512 + (CA)n Simple_repeat Simple_repeat 2 41 0 409 259 17 26 chr9 125166660 125166776 -17104668 + MIR3 SINE MIR 15 129 -79 1197 151 9 46 chr9 125166779 125166960 -17104484 - AluJo SINE Alu -17 295 122 2156 119 3 3 chr9 125166960 125167262 -17104182 + AluSx SINE Alu 1 302 -10 1197 151 9 46 chr9 125167262 125167298 -17104146 - AluJo SINE Alu -190 122 86 368 312 0 21 chr9 125167303 125167444 -17104000 + MIR SINE MIR 125 262 0 576 241 62 41 chr9 125167529 125167724 -17103720 + L2 LINE L2 3094 3292 -21 653 268 112 15 chr9 125167747 125167952 -17103492 - MIR SINE MIR -32 230 6 209 260 247 0 chr9 125168128 125168201 -17103243 - MIR SINE MIR 0 262 172 624 231 31 0 chr9 125168257 125168387 -17103057 - MIR SINE MIR -111 151 18 271 284 20 39 chr9 125168409 125168511 -17102933 - MIR SINE MIR -89 119 20 559 322 35 26 chr9 125169399 125169626 -17101818 - MIR SINE MIR -14 248 20 1121 192 0 48 chr9 125170217 125170248 -17101196 - AluJo SINE Alu -11 301 270 2427 88 0 0 chr9 125170248 125170555 -17100889 + AluSx SINE Alu 1 307 -5 1121 192 0 48 chr9 125170555 125170752 -17100692 - AluJo SINE Alu -42 270 84 1758 170 46 64 chr9 125170752 125171141 -17100303 - L1MB2 LINE L1 -42 6129 5748 209 325 153 56 chr9 125171280 125171619 -17099825 + L2 LINE L2 2937 3308 -5 662 267 5 68 chr9 125171854 125172060 -17099384 - MIR SINE MIR -11 251 59 253 288 68 30 chr9 125172448 125172580 -17098864 + L2 LINE L2 3133 3269 -3 584 319 52 4 chr9 125172816 125173064 -17098380 - MIR SINE MIR -1 261 2 393 211 318 8 chr9 125173968 125174117 -17097327 + MIR3 SINE MIR 15 213 -49 274 271 196 9 chr9 125174450 125174557 -17096887 + MIR SINE MIR 19 145 -117 614 274 142 11 chr9 125175412 125175602 -17095842 - MIR SINE MIR -27 235 21 255 210 74 79 chr9 125175923 125176076 -17095368 - MLT1I LTR MaLR 0 567 288 289 190 65 51 chr9 125176200 125176327 -17095117 - MLT1I LTR MaLR -277 132 16 431 267 33 8 chr9 125176347 125176467 -17094977 - MER5B DNA MER1_type -30 148 26 455 277 38 33 chr9 125176516 125176700 -17094744 - L2 LINE L2 -605 2709 2525 219 258 129 0 chr9 125176940 125177002 -17094442 - MER5A DNA MER1_type -60 129 60 532 152 163 0 chr9 125177025 125177117 -17094327 - FLAM_A SINE Alu -19 123 17 199 255 122 0 chr9 125177239 125177337 -17094107 + MIR SINE MIR 64 173 -89 33 25 0 0 chr9 125178001 125178041 -17093403 + AT_rich Low_complexity Low_complexity 1 40 0 2043 91 0 0 chr9 125178041 125178293 -17093151 - AluSx SINE Alu -45 267 16 183 156 0 0 chr9 125178438 125178470 -17092974 + (TG)n Simple_repeat Simple_repeat 2 33 0 244 152 0 0 chr9 125178537 125178583 -17092861 - L1ME4a LINE L1 0 6121 6076 556 251 132 52 chr9 125178604 125178900 -17092544 - L1ME4a LINE L1 -107 6014 5676 189 0 0 0 chr9 125178900 125178921 -17092523 + (TA)n Simple_repeat Simple_repeat 1 21 0 556 251 132 52 chr9 125178921 125179027 -17092417 - L1ME4a LINE L1 -445 5676 5580 232 288 243 21 chr9 125179243 125179580 -17091864 + L1ME4a LINE L1 5639 6050 -71 2257 107 3 0 chr9 125179688 125179986 -17091458 + AluY SINE Alu 1 299 -12 489 294 108 16 chr9 125180572 125180766 -17090678 + MIR SINE MIR 31 242 -20 2285 73 0 0 chr9 125180972 125181259 -17090185 - AluY SINE Alu -1 310 24 485 221 7 78 chr9 125181260 125181414 -17090030 + MIR SINE MIR 70 212 -50 217 314 86 0 chr9 125181472 125181577 -17089867 + MIR SINE MIR 149 262 0 1980 124 20 3 chr9 125181707 125182006 -17089438 - AluJb SINE Alu -8 304 1 212 260 0 0 chr9 125182104 125182154 -17089290 - MIR SINE MIR -66 142 93 250 140 0 20 chr9 125182806 125182856 -17088588 - L1ME4a LINE L1 -22 6099 6051 200 340 75 11 chr9 125182865 125182959 -17088485 - L2 LINE L2 -2 3270 3171 431 303 148 48 chr9 125182960 125183650 -17087794 - L1ME4a LINE L1 -96 6025 5267 672 251 39 56 chr9 125183714 125183911 -17087533 + MIR SINE MIR 1 195 -67 2419 67 0 10 chr9 125183911 125184211 -17087233 + AluY SINE Alu 1 297 -14 672 251 39 56 chr9 125184211 125184244 -17087200 + MIR SINE MIR 195 227 -35 383 256 47 23 chr9 125184981 125185110 -17086334 + L2 LINE L2 2920 3051 -221 215 279 73 15 chr9 125185205 125185273 -17086171 + L2 LINE L2 3201 3272 0 325 274 144 39 chr9 125185516 125185669 -17085775 - MIR SINE MIR -28 234 66 339 239 0 0 chr9 125185700 125185771 -17085673 - MIR SINE MIR -146 116 46 1935 213 110 15 chr9 125185790 125186255 -17085189 - MER21B LTR ERV1 -1 862 354 303 353 115 13 chr9 125186289 125186445 -17084999 - L2 LINE L2 -5 3267 3096 468 0 0 0 chr9 125187464 125187516 -17083928 + (TG)n Simple_repeat Simple_repeat 2 53 0 195 129 0 0 chr9 125187619 125187650 -17083794 + (TG)n Simple_repeat Simple_repeat 2 32 0 1437 166 96 0 chr9 125187658 125187929 -17083515 - AluJo SINE Alu -15 297 1 2220 89 7 16 chr9 125187937 125188241 -17083203 - AluSx SINE Alu -11 301 1 693 314 29 8 chr9 125188553 125188795 -17082649 - MIR SINE MIR -8 254 8 214 282 56 0 chr9 125188916 125188987 -17082457 + MIR SINE MIR 187 261 -1 1762 144 94 30 chr9 125189765 125189809 -17081635 - L1MB2 LINE L1 -2 6169 6129 1771 166 0 14 chr9 125189809 125190104 -17081340 - AluJo SINE Alu -21 291 1 493 281 125 46 chr9 125190110 125190477 -17080967 - L1ME2 LINE L1 -44 6120 5725 201 147 0 0 chr9 125190652 125190686 -17080758 + (TC)n Simple_repeat Simple_repeat 1 34 0 484 91 0 52 chr9 125190686 125190763 -17080681 - FLAM SINE Alu -14 129 57 279 289 55 0 chr9 125191375 125191503 -17079941 + L2 LINE L2 2397 2531 -783 226 284 88 20 chr9 125191646 125191748 -17079696 + L2 LINE L2 3156 3264 -8 321 231 55 22 chr9 125192385 125192476 -17078968 - MIR SINE MIR -88 174 81 2055 124 0 0 chr9 125192478 125192760 -17078684 + AluSx SINE Alu 1 282 -30 213 239 34 11 chr9 125193492 125193580 -17077864 + GA-rich Low_complexity Low_complexity 6 95 0 * 495 212 5 58 chr9 125193535 125193724 -17077720 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 201 94 0 0 chr9 125193775 125193807 -17077637 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 470 151 94 19 chr9 125193881 125193987 -17077457 + LTR9B LTR ERV1 445 558 -86 312 27 0 0 chr9 125194905 125194942 -17076502 + (TG)n Simple_repeat Simple_repeat 1 37 0 196 283 19 0 chr9 125195221 125195274 -17076170 + L2 LINE L2 3169 3222 -91 979 99 0 0 chr9 125195720 125195851 -17075593 + AluSx SINE Alu 1 131 -181 1102 119 0 0 chr9 125196108 125196267 -17075177 + AluSx SINE Alu 140 298 -14 297 287 232 6 chr9 125196368 125196532 -17074912 - MIR SINE MIR -6 256 56 521 228 41 28 chr9 125196588 125196733 -17074711 - MIR3 SINE MIR -49 159 13 338 289 21 0 chr9 125196838 125196935 -17074509 - MIR3 SINE MIR -24 184 86 180 0 0 0 chr9 125197143 125197163 -17074281 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 2069 111 10 0 chr9 125197257 125197563 -17073881 + AluSp SINE Alu 5 313 0 888 294 163 19 chr9 125197615 125198221 -17073223 + L2 LINE L2 2600 3272 0 864 269 27 37 chr9 125198268 125198565 -17072879 - L2 LINE L2 0 3313 3020 260 350 140 12 chr9 125199781 125200181 -17071263 - L3 LINE CR1 -15 1562 1112 219 167 0 104 chr9 125200898 125200994 -17070450 + CT-rich Low_complexity Low_complexity 6 91 0 650 262 73 5 chr9 125201597 125201788 -17069656 + MIR SINE MIR 55 258 -4 663 295 10 29 chr9 125202167 125202374 -17069070 - MIR SINE MIR -38 224 22 294 247 20 116 chr9 125202785 125202851 -17068593 + MIR SINE MIR 16 62 -146 2149 92 3 38 chr9 125202851 125203165 -17068279 - AluSx SINE Alu -9 303 1 294 247 20 116 chr9 125203165 125203244 -17068200 + MIR SINE MIR 62 147 -61 639 283 35 43 chr9 125203408 125203528 -17067916 + MIR SINE MIR 27 146 -116 729 326 101 3 chr9 125203528 125203835 -17067609 - MER46C DNA MER2_type -1 337 1 639 283 35 43 chr9 125203835 125203944 -17067500 + MIR SINE MIR 146 254 -8 442 331 48 26 chr9 125203926 125204198 -17067246 + L2 LINE L2 2700 2977 -337 * 1394 166 0 0 chr9 125205439 125205668 -17065776 - AluJo SINE Alu -2 310 82 207 237 226 43 chr9 125205804 125205897 -17065547 + L2 LINE L2 3198 3307 -6 2426 78 3 3 chr9 125205897 125206206 -17065238 + L1PA11 LINE L1 5857 6165 -9 2381 82 0 0 chr9 125206210 125206514 -17064930 + AluSq SINE Alu 1 304 -9 195 42 0 0 chr9 125206523 125206547 -17064897 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 477 0 0 0 chr9 125206653 125206706 -17064738 + (TG)n Simple_repeat Simple_repeat 2 54 0 341 244 89 30 chr9 125206721 125206856 -17064588 + MIR SINE MIR 14 156 -106 * 661 247 150 22 chr9 125206853 125207080 -17064364 - MIR SINE MIR 0 262 7 324 229 105 38 chr9 125207084 125207189 -17064255 + MIR SINE MIR 151 262 0 1857 138 3 10 chr9 125207617 125207913 -17063531 + AluJb SINE Alu 9 302 -10 299 333 113 19 chr9 125208146 125208359 -17063085 + L2 LINE L2 3014 3246 -67 688 141 0 33 chr9 125208371 125208492 -17062952 - AluJo SINE Alu -76 236 120 191 260 0 0 chr9 125208494 125208544 -17062900 + L2 LINE L2 3198 3247 -25 26 0 0 0 chr9 125208874 125208900 -17062544 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 125208975 125209006 -17062438 + GC_rich Low_complexity Low_complexity 1 31 0 257 139 0 0 chr9 125209605 125209648 -17061796 - MIR SINE MIR -75 133 91 230 256 0 58 chr9 125209912 125209998 -17061446 - MIR SINE MIR -83 125 44 1064 251 61 26 chr9 125210524 125210835 -17060609 + L2 LINE L2 2990 3311 -2 987 148 13 0 chr9 125210976 125211131 -17060313 - AluSg/x SINE Alu -19 291 135 213 333 0 0 chr9 125211219 125211276 -17060168 - MER91 DNA MER1_type 0 190 134 540 233 62 14 chr9 125211405 125211551 -17059893 + MER45A DNA AcHobo 26 178 0 180 159 0 45 chr9 125211584 125211628 -17059816 - MIR SINE MIR -61 147 106 272 311 42 8 chr9 125211887 125212006 -17059438 - L2 LINE L2 -219 3053 2931 193 222 0 22 chr9 125212389 125212434 -17059010 - MIR SINE MIR -149 59 16 518 345 117 14 chr9 125212755 125213123 -17058321 + L2 LINE L2 2369 2774 -540 413 265 68 80 chr9 125213235 125213285 -17058159 + MIR SINE MIR 2 51 -211 2351 66 0 31 chr9 125213285 125213603 -17057841 - AluY SINE Alu -3 308 1 413 265 68 80 chr9 125213603 125213714 -17057730 + MIR SINE MIR 51 161 -101 2083 105 0 37 chr9 125213810 125214133 -17057311 - AluY SINE Alu 0 311 1 42 0 0 0 chr9 125214145 125214187 -17057257 + AT_rich Low_complexity Low_complexity 1 42 0 801 197 0 0 chr9 125214194 125214321 -17057123 - FLAM_C SINE Alu -4 129 3 21 36 0 0 chr9 125214323 125214351 -17057093 + AT_rich Low_complexity Low_complexity 1 28 0 1799 178 3 0 chr9 125214353 125214657 -17056787 - AluJb SINE Alu -7 305 1 1303 212 42 40 chr9 125214664 125214996 -17056448 - MER77 LTR ERV1 -7 598 292 1266 128 9 44 chr9 125214997 125215196 -17056248 + Tigger2 DNA MER2_type 2500 2692 -26 2096 118 3 0 chr9 125215196 125215493 -17055951 - AluSx SINE Alu -14 298 1 1266 128 9 44 chr9 125215493 125215520 -17055924 + Tigger2 DNA MER2_type 2692 2718 0 275 304 253 10 chr9 125215552 125215848 -17055596 + L2 LINE L2 2887 3254 -18 2190 115 0 0 chr9 125215849 125216153 -17055291 - AluSx SINE Alu -8 304 1 424 273 91 45 chr9 125216315 125216513 -17054931 - MIR SINE MIR -30 232 26 331 311 106 0 chr9 125217078 125217210 -17054234 + MIR3 SINE MIR 20 165 -43 282 276 0 0 chr9 125217829 125217981 -17053463 + (AGTTG)n Simple_repeat Simple_repeat 2 153 0 401 226 128 0 chr9 125218468 125218570 -17052874 + MIR3 SINE MIR 71 185 -23 201 121 0 0 chr9 125218861 125218894 -17052550 + (GA)n Simple_repeat Simple_repeat 1 33 0 259 294 20 0 chr9 125219477 125219579 -17051865 + (AGTTG)n Simple_repeat Simple_repeat 3 106 0 433 226 6 6 chr9 125219592 125219760 -17051684 + (AGTTG)n Simple_repeat Simple_repeat 2 169 0 308 223 10 0 chr9 125219790 125219893 -17051551 + (AGTTG)n Simple_repeat Simple_repeat 4 107 0 21 0 0 0 chr9 125220217 125220238 -17051206 + AT_rich Low_complexity Low_complexity 1 21 0 3215 138 28 75 chr9 125220238 125220288 -17051156 - L1MA7 LINE L1 -1 6290 6239 2461 117 37 0 chr9 125220288 125220639 -17050805 - THE1B LTR MaLR 0 364 1 1642 169 20 14 chr9 125220646 125220941 -17050503 - AluJo SINE Alu -15 297 1 3215 138 28 75 chr9 125220941 125221420 -17050024 - L1MA7 LINE L1 -58 6233 5787 2220 90 3 19 chr9 125221420 125221732 -17049712 - AluSg1 SINE Alu -2 307 1 3215 138 28 75 chr9 125221732 125221847 -17049597 - L1MA7 LINE L1 -504 5787 5668 257 299 229 0 chr9 125222069 125222226 -17049218 - MIR SINE MIR -10 252 60 351 305 92 23 chr9 125223276 125223450 -17047994 + MIR SINE MIR 35 220 -42 199 350 0 0 chr9 125223494 125223554 -17047890 - L2 LINE L2 0 3313 3254 * 959 225 0 5 chr9 125223525 125223716 -17047728 - MIR SINE MIR -25 237 48 2284 101 0 0 chr9 125223776 125224082 -17047362 - AluSx SINE Alu -6 306 1 403 231 25 25 chr9 125224311 125224432 -17047012 + MIR SINE MIR 21 141 -67 885 234 124 88 chr9 125224789 125224853 -17046591 + MLT1K LTR MaLR 2 62 -526 2100 82 7 0 chr9 125224853 125225159 -17046285 - AluY SINE Alu 0 308 1 885 234 124 88 chr9 125225159 125225503 -17045941 + MLT1K LTR MaLR 62 426 -162 1651 165 44 0 chr9 125225711 125225831 -17045613 + AluJb SINE Alu 1 114 -203 190 20 40 60 chr9 125225831 125225881 -17045563 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1651 165 44 0 chr9 125225881 125226065 -17045379 + AluJb SINE Alu 114 317 0 581 279 172 46 chr9 125226735 125227101 -17044343 + MLT1J LTR MaLR 100 511 0 859 142 21 14 chr9 125227126 125227267 -17044177 - FLAM_C SINE Alu -1 142 1 22 35 0 0 chr9 125227352 125227381 -17044063 + AT_rich Low_complexity Low_complexity 1 29 0 716 284 104 5 chr9 125227386 125227608 -17043836 - MIR SINE MIR -3 259 16 322 293 36 36 chr9 125227618 125227758 -17043686 - MIR3 SINE MIR -50 158 19 474 314 71 38 chr9 125228351 125228561 -17042883 + MIR SINE MIR 34 250 -12 265 267 48 19 chr9 125228605 125228710 -17042734 + MIR SINE MIR 107 214 -48 1735 142 9 32 chr9 125228712 125229028 -17042416 + AluJo SINE Alu 1 309 -3 570 335 59 5 chr9 125229195 125229416 -17042028 + MIR SINE MIR 30 262 0 434 290 70 35 chr9 125229527 125229727 -17041717 - MIR SINE MIR -3 259 53 318 318 0 0 chr9 125230246 125230331 -17041113 - L2 LINE L2 -1 3271 3187 409 318 92 0 chr9 125231078 125231235 -17040209 - MIR3 SINE MIR -18 190 20 787 301 9 9 chr9 125232051 125232277 -17039167 - MIR SINE MIR -17 245 20 219 275 83 28 chr9 125232540 125232649 -17038795 + MIR SINE MIR 24 138 -70 319 266 55 9 chr9 125233632 125233741 -17037703 - MIR SINE MIR -115 147 34 296 354 31 8 chr9 125234291 125234421 -17037023 - MIR SINE MIR -65 197 65 184 356 8 42 chr9 125234822 125234940 -17036504 - L2 LINE L2 -155 3117 3004 188 253 36 24 chr9 125236196 125236279 -17035165 - MIR SINE MIR -57 151 68 185 370 25 0 chr9 125236280 125236361 -17035083 - L2 LINE L2 -3 3269 3187 224 296 130 0 chr9 125236409 125236524 -17034920 + L3b LINE CR1 1304 1433 -150 299 302 67 19 chr9 125236677 125236832 -17034612 + MIR SINE MIR 30 192 -60 405 0 0 0 chr9 125238176 125238221 -17033223 + (TG)n Simple_repeat Simple_repeat 2 46 0 194 252 66 62 chr9 125238559 125238681 -17032763 + MIR3 SINE MIR 33 163 -45 190 244 0 0 chr9 125238751 125238792 -17032652 + L3b LINE CR1 1349 1389 -194 1653 175 0 4 chr9 125242018 125242343 -17029101 + AluJb SINE Alu 6 329 0 1315 175 5 9 chr9 125242343 125242560 -17028884 + MER58A DNA MER1_type 5 220 -4 423 341 33 11 chr9 125242581 125242763 -17028681 - MIR SINE MIR -41 221 36 292 268 67 45 chr9 125242829 125243008 -17028436 - L1MC5 LINE L1 -46 7915 7733 1790 192 29 0 chr9 125243990 125244370 -17027074 - Charlie5 DNA MER1_type 0 2624 2234 570 136 0 100 chr9 125244367 125244507 -17026937 - Charlie5 DNA MER1_type -2485 127 2 * 293 313 0 0 chr9 125244532 125244612 -17026832 + L2 LINE L2 3233 3312 -1 364 311 70 72 chr9 125244683 125245279 -17026165 - L2 LINE L2 -214 3058 2467 389 311 170 0 chr9 125245668 125245846 -17025598 + MIR SINE MIR 43 249 -13 201 295 168 0 chr9 125246419 125246514 -17024930 - MIR SINE MIR -72 190 80 525 220 12 145 chr9 125246708 125246804 -17024640 - MIR SINE MIR -32 230 183 2074 126 0 0 chr9 125246804 125247089 -17024355 - AluSx SINE Alu -27 285 1 525 220 12 145 chr9 125247089 125247233 -17024211 - MIR SINE MIR -79 183 22 214 204 0 19 chr9 125247829 125247843 -17023601 + (CAA)n Simple_repeat Simple_repeat 2 15 -39 1451 192 10 39 chr9 125247843 125248150 -17023294 + AluJo SINE Alu 1 298 -14 214 204 0 19 chr9 125248150 125248189 -17023255 + (CAA)n Simple_repeat Simple_repeat 15 54 0 200 267 22 0 chr9 125248729 125248774 -17022670 - L2 LINE L2 -40 3232 3187 219 224 0 0 chr9 125248851 125248900 -17022544 - MIR SINE MIR -20 242 194 2331 132 46 5 chr9 125249227 125249597 -17021847 + MLT1B LTR MaLR 6 390 0 846 110 0 24 chr9 125250031 125250158 -17021286 - FLAM_C SINE Alu 0 143 20 305 281 37 43 chr9 125250241 125250388 -17021056 - MIR SINE MIR -26 236 89 1693 201 134 17 chr9 125250388 125250806 -17020638 - MLT1C LTR MaLR 0 467 1 305 281 37 43 chr9 125250806 125250822 -17020622 - MIR SINE MIR -173 89 74 2100 157 0 0 chr9 125250970 125251282 -17020162 - AluSx SINE Alu 0 312 1 1819 158 0 32 chr9 125251505 125251816 -17019628 + AluJb SINE Alu 2 302 -10 187 329 75 53 chr9 125252195 125252448 -17018996 - L2 LINE L2 -87 3185 2920 2447 68 0 0 chr9 125252448 125252740 -17018704 + AluY SINE Alu 2 293 -18 187 329 75 53 chr9 125252740 125252860 -17018584 - L2 LINE L2 -352 2920 2804 217 330 34 25 chr9 125252926 125253044 -17018400 + MER5A DNA MER1_type 25 143 -46 1071 103 0 23 chr9 125253053 125253275 -17018169 + (TA)n Simple_repeat Simple_repeat 1 216 0 213 266 161 0 chr9 125255454 125255578 -17015866 - MIR SINE MIR -20 242 99 534 211 22 81 chr9 125255716 125255901 -17015543 - L2 LINE L2 0 3313 3140 229 312 89 19 chr9 125256364 125256521 -17014923 + MLT1K LTR MaLR 10 177 -411 299 248 28 103 chr9 125256607 125256752 -17014692 + LTR67 LTR ERVL 408 541 -16 187 346 38 14 chr9 125256795 125257006 -17014438 - L2 LINE L2 -567 2747 2532 2100 178 11 8 chr9 125257178 125257527 -17013917 + MLT2C1 LTR ERVL 1 350 -47 1163 169 38 2 chr9 125257527 125257810 -17013634 + MER2 DNA MER2_type 1 337 -8 445 220 6 22 chr9 125257836 125258018 -17013426 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr9 125258160 125258181 -17013263 + AT_rich Low_complexity Low_complexity 1 21 0 1723 92 83 0 chr9 125258193 125258433 -17013011 + L1PA11 LINE L1 5882 6141 -33 306 0 0 0 chr9 125258511 125258545 -17012899 + (TAA)n Simple_repeat Simple_repeat 2 35 0 350 122 0 0 chr9 125258545 125258594 -17012850 + MLT2C1 LTR ERVL 416 464 0 1245 303 98 17 chr9 125258603 125259082 -17012362 - LTR67 LTR ERVL -4 553 36 15082 128 37 30 chr9 125259347 125261713 -17009731 + L1 LINE L1 16 2398 -5167 4411 181 23 6 chr9 125261701 125262575 -17008869 + L1 LINE L1 5735 6623 -942 * 693 122 0 35 chr9 125262575 125262677 -17008767 + L1MA3 LINE L1 6189 6299 -6 1961 198 70 9 chr9 125263056 125263486 -17007958 - L1ME3 LINE L1 -3 6159 5704 2494 64 0 3 chr9 125263508 125263803 -17007641 - AluY SINE Alu -17 294 1 399 303 142 0 chr9 125263988 125264150 -17007294 - MIR SINE MIR -11 251 67 1015 170 52 52 chr9 125264738 125264950 -17006494 - L1MB5 LINE L1 -8 6166 5955 510 270 83 14 chr9 125264962 125265183 -17006261 - MIR SINE MIR -21 241 8 303 179 0 0 chr9 125266421 125266477 -17004967 - L1ME3 LINE L1 -6 6090 6035 1430 156 0 94 chr9 125266479 125266666 -17004778 - AluJo SINE Alu -18 294 142 2191 124 0 0 chr9 125266666 125266957 -17004487 - AluSc SINE Alu -18 291 1 1430 156 0 94 chr9 125266957 125267057 -17004387 - AluJo SINE Alu -170 142 34 7581 126 171 28 chr9 125267063 125268546 -17002898 - pTR5 LTR ERV1 0 2438 743 1160 218 13 81 chr9 125268604 125268702 -17002742 - L1ME3 LINE L1 -175 5921 5818 1582 150 77 25 chr9 125268702 125268976 -17002468 - AluJo SINE Alu -24 288 1 1160 218 13 81 chr9 125268976 125269249 -17002195 - L1ME3 LINE L1 -278 5818 5575 286 250 40 20 chr9 125269261 125269361 -17002083 + L1M LINE L1 5276 5377 -785 2343 217 66 43 chr9 125269364 125270452 -17000992 - L1ME3 LINE L1 -502 5596 4483 45519 34 5 3 chr9 125270461 125276602 -16994842 - L1PA4 LINE L1 -3 6152 1 3103 241 60 57 chr9 125276605 125276770 -16994674 - L1ME3 LINE L1 -1587 4493 4330 396 171 0 0 chr9 125276770 125276840 -16994604 - L1PA16 LINE L1 0 6166 6097 3103 241 60 57 chr9 125276840 125277893 -16993551 - L1ME3 LINE L1 -1750 4330 3271 1986 160 3 0 chr9 125277895 125278195 -16993249 - AluJb SINE Alu -11 301 1 3904 111 10 40 chr9 125278222 125278571 -16992873 - LTR8 LTR ERV1 -107 584 259 2035 123 38 0 chr9 125278571 125278863 -16992581 - AluSx SINE Alu -9 303 1 3904 111 10 40 chr9 125278863 125279115 -16992329 - LTR8 LTR ERV1 -432 259 1 14619 107 21 33 chr9 125279115 125282385 -16989059 - HUERS-P1 LTR ERV1 0 6263 2775 1881 126 22 0 chr9 125282385 125282655 -16988789 - AluSq SINE Alu -10 303 28 14619 107 21 33 chr9 125282655 125282962 -16988482 - HUERS-P1 LTR ERV1 -3488 2775 2466 7120 114 32 53 chr9 125282966 125284134 -16987310 - HUERS-P1 LTR ERV1 -5120 1143 1 1112 103 7 0 chr9 125284134 125284279 -16987165 - LTR8 LTR ERV1 0 691 546 392 306 77 11 chr9 125284350 125284533 -16986911 - L1ME3 LINE L1 -5806 264 70 22 0 0 0 chr9 125284540 125284562 -16986882 + AT_rich Low_complexity Low_complexity 1 22 0 371 263 102 75 chr9 125284608 125284863 -16986581 - L1MDa LINE L1 -4026 2514 2253 539 296 20 30 chr9 125285626 125285825 -16985619 - MER117 DNA MER1_type 0 197 1 507 291 55 24 chr9 125286440 125286605 -16984839 - L2 LINE L2 -373 2941 2772 3512 200 88 3 chr9 125286731 125288196 -16983248 - L1ME1 LINE L1 -5 6956 5366 444 209 0 0 chr9 125288206 125288297 -16983147 - MLT2D LTR ERVL -319 95 5 225 238 50 25 chr9 125288488 125288568 -16982876 - L1ME4a LINE L1 -81 6040 5959 538 322 33 8 chr9 125289224 125289469 -16981975 + MIR SINE MIR 12 262 0 265 245 29 73 chr9 125289790 125289994 -16981450 - L1ME1 LINE L1 -3905 3036 2842 399 82 41 0 chr9 125289999 125290072 -16981372 + CT-rich Low_complexity Low_complexity 2 77 0 180 0 0 0 chr9 125290070 125290090 -16981354 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 1995 153 13 0 chr9 125290090 125290391 -16981053 - AluSx SINE Alu -7 305 1 1028 274 62 56 chr9 125290397 125291337 -16980107 - L1ME1 LINE L1 -4046 2895 1962 756 191 8 0 chr9 125291337 125291468 -16979976 - FLAM_C SINE Alu -1 132 1 354 79 16 48 chr9 125291478 125291541 -16979903 - L1PA16 LINE L1 -4 6162 6102 1028 274 62 56 chr9 125291541 125291885 -16979559 - L1ME1 LINE L1 -4987 1954 1576 255 226 0 0 chr9 125291894 125291947 -16979497 - L1MA9 LINE L1 -42 6270 6218 296 198 71 16 chr9 125292010 125292136 -16979308 + (TATAG)n Simple_repeat Simple_repeat 2 134 0 876 299 138 34 chr9 125292156 125292808 -16978636 - L1ME1 LINE L1 -4889 1534 815 3106 150 28 4 chr9 125293496 125293997 -16977447 + MLT2B2 LTR ERVL 1 513 -2 24 91 0 0 chr9 125294003 125294069 -16977375 + AT_rich Low_complexity Low_complexity 1 66 0 199 172 17 17 chr9 125294075 125294133 -16977311 + (CATATA)n Simple_repeat Simple_repeat 4 61 0 547 229 110 96 chr9 125294155 125294298 -16977146 + L1MCc LINE L1 19 158 -6265 1767 144 168 27 chr9 125294298 125294673 -16976771 - MSTA LTR MaLR 0 428 1 547 229 110 96 chr9 125294673 125294766 -16976678 + L1MCc LINE L1 158 248 -6175 2319 97 10 0 chr9 125294766 125295056 -16976388 - AluSx SINE Alu -19 293 1 547 229 110 96 chr9 125295056 125295245 -16976199 + L1MCc LINE L1 248 451 -5972 582 277 47 51 chr9 125295403 125295649 -16975795 - L1ME3A LINE L1 -147 6023 5818 2772 77 6 0 chr9 125295667 125296020 -16975424 + THE1A LTR MaLR 1 355 0 10787 93 13 9 chr9 125296020 125297594 -16973850 + THE1A-int LTR MaLR 1 1580 0 2837 80 11 0 chr9 125297619 125297970 -16973474 + THE1A LTR MaLR 1 355 0 1286 273 13 18 chr9 125297997 125298389 -16973055 - L1ME3A LINE L1 -358 5812 5423 * 2743 247 40 23 chr9 125298380 125299570 -16971874 - L1ME3A LINE L1 0 6162 4902 2779 10 0 0 chr9 125299743 125300043 -16971401 + AluYa5 SINE Alu 1 300 -11 960 217 0 0 chr9 125300150 125300316 -16971128 - AluJo/FRAM SINE Alu 0 302 137 847 128 7 64 chr9 125300319 125300349 -16971095 - FLAM_C SINE Alu -173 139 109 3492 73 4 22 chr9 125300349 125300799 -16970645 - MLT2A1 LTR ERVL 0 444 3 847 128 7 64 chr9 125300799 125300909 -16970535 - FLAM_C SINE Alu -203 109 7 42 65 0 0 chr9 125301270 125301347 -16970097 + AT_rich Low_complexity Low_complexity 1 77 0 1626 186 84 14 chr9 125301786 125302355 -16969089 + MER67C LTR ERV1 1 514 0 2858 97 3 26 chr9 125302362 125302744 -16968700 - THE1C LTR MaLR -2 373 1 239 333 26 9 chr9 125303267 125303381 -16968063 - L3 LINE CR1 -169 1408 1293 224 340 38 75 chr9 125303824 125304036 -16967408 + L2 LINE L2 2538 2741 -573 2008 184 39 53 chr9 125304036 125304504 -16966940 - MLT1C LTR MaLR 0 467 7 202 239 0 0 chr9 125304519 125304565 -16966879 - L2 LINE L2 -5 3308 3263 434 270 0 10 chr9 125304988 125305088 -16966356 + L2 LINE L2 3214 3312 -1 598 326 162 26 chr9 125305308 125305526 -16965918 + L2 LINE L2 2489 2676 -596 2180 129 7 110 chr9 125305526 125305961 -16965483 - MLT1B LTR MaLR 0 390 1 598 326 162 26 chr9 125305961 125306431 -16965013 + L2 LINE L2 2676 3267 -5 664 268 84 25 chr9 125306814 125307053 -16964391 + MIR SINE MIR 9 261 -1 206 81 27 0 chr9 125307838 125307875 -16963569 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1802 167 0 14 chr9 125307878 125308165 -16963279 - AluJb SINE Alu -29 283 1 240 35 0 0 chr9 125308445 125308474 -16962970 + (TG)n Simple_repeat Simple_repeat 2 30 0 3739 135 55 2 chr9 125308710 125309258 -16962186 + LTR19B LTR ERV1 1 577 -3 201 221 12 23 chr9 125309524 125309610 -16961834 + CT-rich Low_complexity Low_complexity 4 88 0 815 126 0 119 chr9 125309688 125309774 -16961670 + FLAM_C SINE Alu 1 63 -239 3964 193 22 52 chr9 125309774 125310758 -16960686 - LTR5 LTR ERVK -14 955 1 815 126 0 119 chr9 125310758 125310822 -16960622 + FLAM_C SINE Alu 63 133 -169 2501 75 0 0 chr9 125311194 125311502 -16959942 - AluY SINE Alu -3 308 1 848 104 0 0 chr9 125311842 125311967 -16959477 - L1MA7 LINE L1 -8 6283 6159 1940 151 0 3 chr9 125311981 125312273 -16959171 + AluSx SINE Alu 1 291 -21 2592 168 11 25 chr9 125312289 125312765 -16958679 - L1MA7 LINE L1 -1 6290 5822 2217 92 3 0 chr9 125312986 125313318 -16958126 - AluSp SINE Alu 0 333 1 2481 68 0 0 chr9 125313716 125314011 -16957433 - AluY SINE Alu -16 295 1 1375 154 28 47 chr9 125314440 125314580 -16956864 + MSTA LTR MaLR 1 142 -286 2442 83 3 0 chr9 125314580 125314882 -16956562 + AluSq SINE Alu 1 303 -10 1375 154 28 47 chr9 125314882 125315118 -16956326 + MSTA LTR MaLR 142 428 0 2009 143 3 3 chr9 125316066 125316359 -16955085 + AluSx SINE Alu 1 293 -19 3353 205 37 14 chr9 125316720 125318002 -16953442 - L1MB5 LINE L1 -188 5986 4676 883 246 28 139 chr9 125318005 125318464 -16952980 + L1M4 LINE L1 553 960 -5582 * 5596 86 20 11 chr9 125318456 125319221 -16952223 + L1PA10 LINE L1 5396 6167 -1 1473 193 23 46 chr9 125319220 125319614 -16951830 + L1M4 LINE L1 937 1321 -5221 * 235 274 128 42 chr9 125319838 125320234 -16951210 - L1MEc LINE L1 -4598 1798 1335 2660 117 14 3 chr9 125320234 125320594 -16950850 - THE1B LTR MaLR 0 364 1 235 274 128 42 chr9 125320594 125320773 -16950671 - L1MEc LINE L1 -5061 1335 1173 2398 162 59 0 chr9 125320797 125321205 -16950239 - L1MA5 LINE L1 -296 6720 6289 2682 104 0 11 chr9 125321535 125321714 -16949730 - L1PB1 LINE L1 -7 6144 5965 463 93 0 175 chr9 125321714 125321811 -16949633 - MADE1 DNA Mariner 0 80 1 2682 104 0 11 chr9 125321811 125321997 -16949447 - L1PB1 LINE L1 -186 5965 5783 243 36 0 0 chr9 125322344 125322372 -16949072 - THE1C LTR MaLR -211 164 137 5633 146 58 12 chr9 125322423 125326581 -16944863 - L1MA5 LINE L1 -1134 5728 635 1237 155 0 0 chr9 125326582 125326782 -16944662 - L1MA5 LINE L1 -6663 200 1 374 257 26 53 chr9 125326850 125327002 -16944442 + MER65B-int LTR ERV1 62 209 -4662 297 329 6 36 chr9 125327103 125327270 -16944174 + MER65B-int LTR ERV1 478 639 -4232 291 292 25 59 chr9 125327312 125327514 -16943930 - MER54B LTR ERVL -541 252 58 1959 105 7 43 chr9 125328993 125329297 -16942147 - AluSq SINE Alu -20 293 1 564 294 73 73 chr9 125329886 125330325 -16941119 + MER65B-int LTR ERV1 2546 2708 -4093 297 345 76 51 chr9 125330830 125331363 -16940081 + MER65B-int LTR ERV1 3245 3763 -3038 2444 127 8 8 chr9 125331363 125331718 -16939726 + THE1A LTR MaLR 1 355 0 12356 87 9 15 chr9 125331718 125333307 -16938137 + THE1A-int LTR MaLR 1 1580 0 2470 132 8 8 chr9 125333307 125333662 -16937782 + THE1A LTR MaLR 1 355 0 297 345 76 51 chr9 125333662 125333731 -16937713 + MER65B-int LTR ERV1 3762 3864 -2937 300 314 107 13 chr9 125334894 125335053 -16936391 + MER65B-int LTR ERV1 4988 5161 -1640 2054 294 56 18 chr9 125335868 125335930 -16935514 + MER65B-int LTR ERV1 4218 4276 -595 451 329 62 20 chr9 125335930 125336234 -16935210 + MER70-int LTR ERVL 4409 4725 -298 2054 294 56 18 chr9 125336234 125336715 -16934729 + MER65B-int LTR ERV1 4276 4871 0 351 228 44 18 chr9 125336715 125336829 -16934615 + MER65B LTR ERV1 1 117 -414 276 281 216 42 chr9 125338110 125338277 -16933167 + MIR SINE MIR 30 225 -37 2363 94 7 7 chr9 125338873 125339180 -16932264 - AluSx SINE Alu -5 307 1 368 254 130 45 chr9 125340363 125340540 -16930904 - MIR SINE MIR -41 221 30 727 89 0 0 chr9 125340947 125341061 -16930383 - AluSg SINE Alu 0 303 190 1106 87 7 0 chr9 125341062 125341200 -16930244 - AluSg SINE Alu -171 139 1 249 293 43 56 chr9 125342346 125342578 -16928866 + L1ME1 LINE L1 4755 4983 -1163 848 73 0 0 chr9 125342616 125342726 -16928718 - L1PA13 LINE L1 -2 6161 6052 2062 86 92 60 chr9 125342804 125342956 -16928488 - L1PA12 LINE L1 0 6168 6022 2485 81 0 3 chr9 125342956 125343266 -16928178 - AluSc SINE Alu 0 309 1 2062 86 92 60 chr9 125343266 125343461 -16927983 - L1PA12 LINE L1 -146 6022 5810 382 207 56 109 chr9 125343574 125343915 -16927529 + L1ME1 LINE L1 5204 5539 -623 6025 140 26 13 chr9 125343927 125345321 -16926123 + L1MA6 LINE L1 4883 6300 0 327 326 48 20 chr9 125345492 125345639 -16925805 + L1ME1 LINE L1 5710 5860 -306 2371 88 0 0 chr9 125346335 125346631 -16924813 - AluSc SINE Alu -12 297 2 1869 157 10 3 chr9 125346923 125347217 -16924227 + AluJb SINE Alu 1 296 -16 2044 117 17 17 chr9 125348133 125348432 -16923012 - AluSx SINE Alu -13 299 1 328 311 68 14 chr9 125348435 125348583 -16922861 - MIR SINE MIR -100 162 7 264 399 14 7 chr9 125348852 125349000 -16922444 - MIR SINE MIR -112 150 2 297 0 0 0 chr9 125349631 125349664 -16921780 + (CA)n Simple_repeat Simple_repeat 2 34 0 2078 121 23 3 chr9 125350305 125350611 -16920833 - AluSx SINE Alu 0 312 1 190 213 21 21 chr9 125350820 125350867 -16920577 + L3 LINE CR1 1 47 -1530 230 338 38 61 chr9 125350942 125351023 -16920421 - L2 LINE L2 0 3272 3191 1555 86 5 24 chr9 125351023 125351232 -16920212 - L1PA7 LINE L1 0 6154 5950 230 338 38 61 chr9 125351232 125351363 -16920081 - L2 LINE L2 -81 3191 3065 418 105 0 0 chr9 125351384 125351441 -16920003 - LTR66 LTR ERVL 0 610 554 183 42 0 0 chr9 125351445 125351469 -16919975 + (TA)n Simple_repeat Simple_repeat 2 25 0 542 73 0 0 chr9 125351469 125351537 -16919907 - LTR66 LTR ERVL -207 403 336 3323 55 0 8 chr9 125351544 125351946 -16919498 - LTR66 LTR ERVL -211 399 1 3405 62 13 2 chr9 125351946 125352492 -16918952 - HERVL66 LTR ERVL 0 4329 3694 1459 63 0 0 chr9 125352499 125352689 -16918755 + LTR66 LTR ERVL 421 610 0 203 309 108 89 chr9 125352769 125353903 -16917541 - L2 LINE L2 -338 2976 1821 4702 128 15 0 chr9 125354169 125354847 -16916597 - L1PA16 LINE L1 0 6166 5479 10693 154 38 4 chr9 125354847 125358662 -16912782 - L1PBa LINE L1 -1954 4908 816 1881 129 11 22 chr9 125358662 125359011 -16912433 - MER4A LTR ERV1 0 664 261 656 121 0 10 chr9 125359011 125359110 -16912334 - MER4A LTR ERV1 -566 98 1 876 124 5 115 chr9 125359110 125359319 -16912125 - L1PBa LINE L1 -6044 819 634 1256 130 5 5 chr9 125359319 125359519 -16911925 - L1PBa LINE L1 -6663 200 1 2926 243 7 20 chr9 125359526 125360338 -16911106 - L1 LINE L1 -2679 3467 2666 * 13614 147 16 56 chr9 125360334 125362706 -16908738 - L1PA15-16 LINE L1 -4533 2316 38 266 380 36 16 chr9 125362747 125362939 -16908505 - L2 LINE L2 -2511 803 608 291 281 30 30 chr9 125363007 125363174 -16908270 + L1ME LINE L1 5672 5838 -283 22 0 0 0 chr9 125363895 125363917 -16907527 + AT_rich Low_complexity Low_complexity 1 22 0 1059 299 63 40 chr9 125363928 125364353 -16907091 - LTR16C LTR ERVL -4 487 53 749 358 57 31 chr9 125364718 125365329 -16906115 - ERVL LTR ERVL -369 5158 4490 1599 335 85 20 chr9 125365361 125366407 -16905037 - ERVL LTR ERVL -1299 4465 3352 910 364 3 0 chr9 125366439 125366763 -16904681 - ERVL LTR ERVL -2254 3231 2907 3075 129 14 0 chr9 125367321 125367741 -16903703 - MSTC LTR MaLR -2 426 1 285 272 0 22 chr9 125367980 125368072 -16903372 + T-rich Low_complexity Low_complexity 4 93 0 303 315 7 14 chr9 125368875 125369018 -16902426 + GA-rich Low_complexity Low_complexity 1 142 0 299 233 89 11 chr9 125370005 125370095 -16901349 - MIR SINE MIR -6 256 160 479 214 0 6 chr9 125370251 125370405 -16901039 + GA-rich Low_complexity Low_complexity 1 153 0 2024 190 64 54 chr9 125370922 125371422 -16900022 - MLT1D LTR MaLR 0 505 1 1737 61 33 0 chr9 125372116 125372329 -16899115 + L1PA10 LINE L1 5940 6159 -9 1509 96 25 0 chr9 125372678 125372877 -16898567 - L1PA10 LINE L1 -16 6152 5949 546 287 13 7 chr9 125374486 125374636 -16896808 - MER5A DNA MER1_type -6 183 33 2019 72 4 0 chr9 125375699 125375949 -16895495 - L1PA8 LINE L1 -1 6171 5921 3088 92 62 9 chr9 125376308 125376741 -16894703 - L1PA16 LINE L1 -3 6163 5708 412 276 60 9 chr9 125377056 125377172 -16894272 + MER5A DNA MER1_type 68 189 0 351 0 0 0 chr9 125377525 125377564 -16893880 + (TG)n Simple_repeat Simple_repeat 2 40 0 252 303 169 28 chr9 125378197 125378375 -16893069 - MIR SINE MIR -56 206 4 2812 7 0 0 chr9 125378473 125378775 -16892669 - AluYa5 SINE Alu -9 302 1 320 333 6 48 chr9 125379216 125379384 -16892060 - MIR SINE MIR -55 207 47 2515 86 36 3 chr9 125379893 125380230 -16891214 - L1PA10 LINE L1 -10 6158 5811 862 58 0 0 chr9 125380230 125380334 -16891110 + L1PA10 LINE L1 5694 5797 -371 245 309 12 0 chr9 125380367 125380451 -16890993 - L1M4 LINE L1 -2042 4104 4020 1334 176 79 7 chr9 125380468 125380746 -16890698 - MLT1A1 LTR MaLR 0 365 68 240 310 0 0 chr9 125383224 125383282 -16888162 + MIR SINE MIR 81 138 -70 237 65 0 0 chr9 125384748 125384779 -16886665 + (TG)n Simple_repeat Simple_repeat 2 32 0 184 369 36 0 chr9 125384909 125385020 -16886424 - L2 LINE L2 -38 3275 3161 547 257 14 7 chr9 125385085 125385225 -16886219 - MIR SINE MIR -27 235 95 227 352 80 53 chr9 125385237 125385835 -16885609 - L2 LINE L2 -188 3084 2469 1633 191 88 0 chr9 125386236 125386555 -16884889 + MER7A DNA MER2_type 2 346 0 29 0 0 0 chr9 125387624 125387653 -16883791 + AT_rich Low_complexity Low_complexity 1 29 0 397 306 72 0 chr9 125388092 125388203 -16883241 + L2 LINE L2 3191 3309 -4 667 326 30 0 chr9 125388268 125388504 -16882940 - MIR SINE MIR 0 262 20 573 313 32 9 chr9 125390035 125390252 -16881192 - MIR SINE MIR -30 232 11 263 323 20 82 chr9 125390413 125390487 -16880957 + MER5A DNA MER1_type 1 78 -111 2189 129 0 3 chr9 125390487 125390797 -16880647 + AluSx SINE Alu 1 309 -3 263 323 20 82 chr9 125390797 125390917 -16880527 + MER5A DNA MER1_type 78 183 -6 239 383 7 21 chr9 125390926 125391067 -16880377 - MIR3 SINE MIR -51 157 19 2750 83 128 5 chr9 125392779 125393178 -16878266 - LTR7 LTR ERV1 -2 448 1 1575 82 8 25 chr9 125393178 125393421 -16878023 - HERVH LTR ERV1 0 7713 7475 1337 148 19 0 chr9 125393437 125393653 -16877791 - HERVH LTR ERV1 -1894 5819 5600 3921 142 0 2 chr9 125393654 125394230 -16877214 - HERVH LTR ERV1 -2564 5149 4575 649 146 0 0 chr9 125394227 125394323 -16877121 - HERVH LTR ERV1 -3043 4670 4575 * 1372 93 0 0 chr9 125394320 125394502 -16876942 - HERVH LTR ERV1 -3043 4670 4489 3749 77 0 6 chr9 125394505 125395010 -16876434 - HERVH LTR ERV1 -3720 3993 3492 880 124 41 0 chr9 125395000 125395145 -16876299 - HERVH LTR ERV1 -4423 3290 3140 * 15629 102 20 12 chr9 125395139 125397916 -16873528 - HERVH LTR ERV1 -4726 2987 1 2792 72 119 7 chr9 125397918 125398321 -16873123 - LTR7 LTR ERV1 -2 448 1 302 254 0 0 chr9 125398526 125398597 -16872847 + HAL1 LINE L1 3 73 -2434 1070 168 19 88 chr9 125398694 125398956 -16872488 + MER67D LTR ERV1 17 260 -254 2104 186 18 14 chr9 125398956 125399172 -16872272 - L1 LINE L1 -1217 4929 4715 3940 48 19 0 chr9 125399172 125399653 -16871791 - LTR2B LTR ERV1 0 490 1 2104 186 18 14 chr9 125399653 125399872 -16871572 - L1 LINE L1 -1431 4715 4492 2500 123 8 33 chr9 125399874 125400454 -16870990 - MER61E LTR ERV1 0 779 1 1955 191 2 16 chr9 125400454 125400877 -16870567 - L1 LINE L1 -1653 4493 4077 1785 163 97 0 chr9 125400872 125401203 -16870241 + L1PA16 LINE L1 5799 6161 -5 * 1265 178 5 71 chr9 125401207 125401294 -16870150 + MER67D LTR ERV1 232 323 -191 9452 24 0 0 chr9 125401294 125403167 -16868277 - L1PA4 LINE L1 -4 6151 4273 1265 178 5 71 chr9 125403167 125403397 -16868047 + MER67D LTR ERV1 323 514 0 1502 292 78 35 chr9 125403401 125404000 -16867444 + HAL1 LINE L1 184 808 -1699 2076 244 46 26 chr9 125404030 125404677 -16866767 - L1ME3 LINE L1 -27 6135 5476 339 226 61 17 chr9 125404829 125404845 -16866599 - L1MA10 LINE L1 -3 6331 6316 1261 245 157 9 chr9 125404845 125405374 -16866070 - L1ME2 LINE L1 -9 6155 5492 1980 147 0 10 chr9 125405374 125405673 -16865771 - AluJb SINE Alu -16 296 1 1261 245 157 9 chr9 125405673 125405795 -16865649 - L1ME2 LINE L1 -672 5492 5389 946 282 115 27 chr9 125405795 125406125 -16865319 + MLT1G1 LTR MaLR 236 594 -1 227 250 15 0 chr9 125406169 125406237 -16865207 - L1ME2 LINE L1 -2499 3647 3579 389 128 90 0 chr9 125406243 125406321 -16865123 + L1MA7 LINE L1 6205 6289 -2 26 50 0 0 chr9 125406323 125406363 -16865081 + AT_rich Low_complexity Low_complexity 1 40 0 2698 246 92 27 chr9 125406363 125406579 -16864865 - L1ME2 LINE L1 -2572 3574 3374 2050 98 7 0 chr9 125406579 125406853 -16864591 - AluSp SINE Alu -1 312 37 2698 246 92 27 chr9 125406853 125407837 -16863607 - L1ME2 LINE L1 -2772 3374 2295 664 270 50 9 chr9 125407870 125408092 -16863352 + L1ME LINE L1 5592 5822 -348 331 273 58 96 chr9 125408159 125408419 -16863025 + MLT1H1-int LTR MaLR 1107 1356 -15 688 239 110 116 chr9 125408432 125408701 -16862743 + MLT1H1 LTR MaLR 1 242 -288 1659 82 29 0 chr9 125408991 125409236 -16862208 - L1MA5A LINE L1 -4 6293 6042 26 30 0 0 chr9 125409237 125409270 -16862174 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr9 125409288 125409314 -16862130 + AT_rich Low_complexity Low_complexity 1 26 0 2926 133 18 3 chr9 125409554 125409791 -16861653 - L1PB4 LINE L1 -3 6153 5921 342 0 0 0 chr9 125409791 125409829 -16861615 + (TG)n Simple_repeat Simple_repeat 2 39 0 2926 133 18 3 chr9 125409829 125410266 -16861178 - L1PB4 LINE L1 -235 5921 5351 2477 158 23 11 chr9 125410274 125410711 -16860733 - MER34 LTR ERV1 -89 453 12 4630 174 9 11 chr9 125410711 125410772 -16860672 - L1PB4 LINE L1 -790 5356 5296 1528 35 0 35 chr9 125410772 125410971 -16860473 - L1PA5 LINE L1 -8 6146 5955 270 0 0 0 chr9 125410974 125411004 -16860440 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4630 174 9 11 chr9 125411004 125411224 -16860220 - L1PB4 LINE L1 -852 5294 5075 2185 160 98 0 chr9 125411224 125411612 -16859832 + MSTB LTR MaLR 1 426 0 4630 174 9 11 chr9 125411612 125412273 -16859171 - L1PB4 LINE L1 -1071 5075 4410 * 4767 202 17 21 chr9 125412271 125413341 -16858103 + L1PB4 LINE L1 3337 4402 -1744 242 227 13 40 chr9 125413403 125413478 -16857966 + MIR SINE MIR 8 80 -182 210 71 0 0 chr9 125414201 125414229 -16857215 + (CA)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr9 125414228 125414251 -16857193 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 432 0 0 0 chr9 125414920 125414968 -16856476 + (TG)n Simple_repeat Simple_repeat 2 49 0 185 260 40 0 chr9 125416995 125417045 -16854399 - MIR SINE MIR 0 262 211 547 226 70 0 chr9 125417768 125417883 -16853561 - MLT2C1 LTR ERVL -40 357 235 3010 134 41 13 chr9 125417883 125418414 -16853030 - L1MC1 LINE L1 0 6333 5788 6485 225 57 16 chr9 125418429 125418672 -16852772 - L1M4 LINE L1 -1173 4973 4741 1477 62 0 5 chr9 125418672 125418865 -16852579 + L1PA8 LINE L1 5977 6168 -4 6485 225 57 16 chr9 125418865 125420491 -16850953 - L1M4 LINE L1 -1405 4741 3028 1960 159 17 0 chr9 125421082 125421441 -16850003 - L1MA6 LINE L1 0 6300 5936 818 95 0 0 chr9 125421473 125421589 -16849855 - L1PA8 LINE L1 0 6172 6057 11719 169 9 22 chr9 125421590 125424891 -16846553 - L1P3 LINE L1 -3090 3371 56 2885 147 19 32 chr9 125424886 125425021 -16846423 - L1MA6 LINE L1 -344 5956 5822 * 3367 208 16 69 chr9 125425021 125426217 -16845227 - L1MD3 LINE L1 -743 5403 4711 6574 148 25 45 chr9 125426218 125427357 -16844087 + ERVL LTR ERVL 1925 3041 -2723 2809 127 16 2 chr9 125427357 125427783 -16843661 + ERVL LTR ERVL 3905 4336 -1428 458 215 65 0 chr9 125427783 125427909 -16843535 - L1PA16 LINE L1 -41 6122 5985 253 178 0 78 chr9 125427908 125427998 -16843446 - L1M4 LINE L1 -986 5160 5078 * 252 329 51 19 chr9 125428180 125428338 -16843106 + HAL1 LINE L1 1448 1610 -897 246 238 33 41 chr9 125428724 125428846 -16842598 - L1ME LINE L1 -311 5810 5690 23 0 0 0 chr9 125429231 125429254 -16842190 + AT_rich Low_complexity Low_complexity 1 23 0 487 271 57 39 chr9 125430933 125431162 -16840282 - L2 LINE L2 -31 3282 3050 348 24 0 0 chr9 125431827 125431868 -16839576 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 5626 22 0 0 chr9 125431869 125432513 -16838931 - L1PA3 LINE L1 -20 6135 5492 301 323 92 0 chr9 125432649 125432779 -16838665 + MIR SINE MIR 95 236 -26 285 327 96 18 chr9 125432982 125433182 -16838262 - MIR SINE MIR 0 262 42 2197 101 7 0 chr9 125433441 125433737 -16837707 + AluSg SINE Alu 2 299 -11 1383 61 0 0 chr9 125433737 125433901 -16837543 + AluSc SINE Alu 132 295 -14 2205 162 54 2 chr9 125434045 125434452 -16836992 - MSTA LTR MaLR 0 428 1 7652 222 35 11 chr9 125435598 125437795 -16833649 - L1MC/D LINE L1 -744 5682 3503 1523 244 60 2 chr9 125437810 125438283 -16833161 - L1MA9 LINE L1 -38 6274 5775 414 138 23 35 chr9 125438364 125438379 -16833065 - L1MA9 LINE L1 -498 5793 5779 2016 126 0 49 chr9 125438379 125438704 -16832740 - AluSx SINE Alu -3 309 1 414 138 23 35 chr9 125438704 125438775 -16832669 - L1MA9 LINE L1 -512 5779 5708 2427 163 10 7 chr9 125438780 125439184 -16832260 - L1MC/D LINE L1 -6012 414 10 230 328 25 34 chr9 125439227 125439346 -16832098 + L1ME LINE L1 5509 5626 -495 246 276 116 58 chr9 125439613 125439906 -16831538 + L1ME LINE L1 5290 5599 -563 4396 72 21 41 chr9 125440163 125440338 -16831106 + L1PB1 LINE L1 5502 5679 -472 2180 121 0 0 chr9 125440338 125440635 -16830809 + AluSg SINE Alu 1 297 -13 4396 72 21 41 chr9 125440635 125441122 -16830322 + L1PB1 LINE L1 5679 6151 0 508 51 38 0 chr9 125441135 125441214 -16830230 + L1PB1 LINE L1 6070 6151 0 51 89 0 0 chr9 125441398 125441533 -16829911 + AT_rich Low_complexity Low_complexity 1 135 0 22 56 0 0 chr9 125443199 125443235 -16828209 + AT_rich Low_complexity Low_complexity 1 36 0 2278 104 0 0 chr9 125443254 125443552 -16827892 + AluSc SINE Alu 1 298 -11 1599 117 141 0 chr9 125443833 125444120 -16827324 + AluSx SINE Alu 1 322 0 239 272 61 78 chr9 125444496 125444602 -16826842 + L1MEd LINE L1 599 702 -5417 1601 189 14 21 chr9 125444602 125444893 -16826551 + AluJo SINE Alu 1 289 -23 239 272 61 78 chr9 125444893 125444966 -16826478 + L1MEd LINE L1 702 775 -5344 384 228 98 60 chr9 125444990 125445174 -16826270 + L1MEd LINE L1 876 1066 -5053 27 29 0 0 chr9 125445178 125445212 -16826232 + AT_rich Low_complexity Low_complexity 1 34 0 1129 154 14 93 chr9 125445355 125445595 -16825849 + L1MC3 LINE L1 7361 7578 -207 2220 111 0 10 chr9 125445595 125445901 -16825543 + AluSx SINE Alu 1 303 -9 1129 154 14 93 chr9 125445901 125445940 -16825504 + L1MC3 LINE L1 7578 7618 -167 603 146 9 27 chr9 125446088 125446198 -16825246 + FLAM_C SINE Alu 21 128 -15 474 141 13 0 chr9 125446222 125446300 -16825144 + L1ME1 LINE L1 1124 1202 -5340 1030 226 22 19 chr9 125446336 125446606 -16824838 + L1ME1 LINE L1 4344 4614 -2030 548 98 0 0 chr9 125446606 125446688 -16824756 + MLT2A2 LTR ERVL 1 82 -371 232 94 0 0 chr9 125446691 125446723 -16824721 + L1MB7 LINE L1 5835 5866 -314 1771 153 7 14 chr9 125446724 125447011 -16824433 + AluSx SINE Alu 1 285 -27 341 205 0 12 chr9 125447013 125447096 -16824348 + (TATG)n Simple_repeat Simple_repeat 3 84 0 1146 200 80 10 chr9 125447097 125447397 -16824047 + L1MB7 LINE L1 5863 6183 -1 304 376 24 12 chr9 125447396 125447566 -16823878 + L1MEc LINE L1 317 488 -6075 * 731 100 0 0 chr9 125447567 125447667 -16823777 - AluSc SINE Alu -123 186 87 443 348 16 5 chr9 125447667 125447851 -16823593 + L1MEc LINE L1 487 672 -5891 802 179 27 76 chr9 125447866 125448090 -16823354 + L1MB7 LINE L1 5970 6182 -2 649 154 0 0 chr9 125448100 125448210 -16823234 - L1P LINE L1 -1088 5058 4949 * 3004 230 75 19 chr9 125448209 125449024 -16822420 + L1ME1 LINE L1 4817 5585 -1079 2378 100 0 0 chr9 125449024 125449323 -16822121 + AluSx SINE Alu 1 299 -13 3004 230 75 19 chr9 125449323 125450243 -16821201 + L1ME1 LINE L1 5585 6659 -5 290 263 62 30 chr9 125450308 125450513 -16820931 + L1MEc LINE L1 1408 1827 -916 2271 94 0 26 chr9 125450515 125450824 -16820620 - AluSc SINE Alu -8 301 1 436 181 11 0 chr9 125451264 125451358 -16820086 + L1MA9 LINE L1 6183 6277 -35 249 225 125 0 chr9 125451468 125451548 -16819896 - L1M4 LINE L1 -3805 2523 2434 39030 32 22 1 chr9 125451670 125457468 -16813976 + L1PA3 LINE L1 230 6152 -3 213 94 0 0 chr9 125457529 125457561 -16813883 + (CA)n Simple_repeat Simple_repeat 2 33 0 347 301 59 0 chr9 125457814 125458033 -16813411 + L1MEc LINE L1 2935 3166 -3216 643 213 26 56 chr9 125458281 125458470 -16812974 - L1M4 LINE L1 -4452 876 985 10378 40 1 1 chr9 125458470 125460520 -16810924 - L1PA5 LINE L1 -1 6153 4104 643 213 26 56 chr9 125460520 125460956 -16810488 - L1M4 LINE L1 -4342 986 539 1169 186 44 27 chr9 125461003 125461298 -16810146 - L1M4 LINE L1 -2025 4121 3822 * 3213 156 27 24 chr9 125461297 125461956 -16809488 - L1 LINE L1 -946 5200 4540 1043 243 18 7 chr9 125461963 125462239 -16809205 + MER65A-int LTR ERV1 4589 4867 -4 2335 142 32 32 chr9 125462247 125462684 -16808760 + MER65A LTR ERV1 5 441 -4 351 255 0 0 chr9 125462689 125462783 -16808661 + L1M4 LINE L1 2645 2738 -3408 1329 254 47 6 chr9 125462805 125463428 -16808016 + L1M4 LINE L1 2697 3344 -2802 2168 125 141 3 chr9 125463537 125463912 -16807532 + MSTA LTR MaLR 2 428 0 537 263 102 30 chr9 125463954 125464382 -16807062 + L1P4 LINE L1 5004 5459 -715 249 250 25 25 chr9 125464603 125464683 -16806761 - MIR SINE MIR -76 132 53 219 346 13 13 chr9 125465163 125465241 -16806203 + MIR3 SINE MIR 84 161 -47 2425 77 0 0 chr9 125466848 125467148 -16804296 + AluSg1 SINE Alu 1 300 -9 295 340 214 0 chr9 125467911 125468126 -16803318 + MIR SINE MIR 2 262 0 22 35 0 0 chr9 125471084 125471113 -16800331 + AT_rich Low_complexity Low_complexity 1 29 0 359 119 0 0 chr9 125472143 125472202 -16799242 + MADE1 DNA Mariner 2 60 -20 338 291 10 19 chr9 125472665 125472768 -16798676 - MIR SINE MIR -60 148 47 374 263 81 25 chr9 125473347 125473507 -16797937 + MIR SINE MIR 20 188 -74 837 303 42 8 chr9 125473618 125473859 -16797585 + MIR SINE MIR 3 251 -11 357 254 49 138 chr9 125474087 125474311 -16797133 + MIR SINE MIR 24 227 -35 225 248 105 19 chr9 125474479 125474584 -16796860 + L3 LINE CR1 1055 1168 -409 263 240 223 16 chr9 125474618 125474739 -16796705 - MIR SINE MIR 0 262 117 332 335 137 24 chr9 125474770 125475018 -16796426 + L3 LINE CR1 1251 1526 -51 890 211 101 29 chr9 125475113 125475529 -16795915 - Charlie2 DNA MER1_type -82 2780 2335 308 200 14 0 chr9 125475577 125475647 -16795797 + MER116 DNA Mariner 1 71 -9 297 181 175 50 chr9 125475647 125475807 -16795637 - Charlie2 DNA MER1_type -551 2311 2132 309 282 65 8 chr9 125475860 125475984 -16795460 - Charlie2 DNA MER1_type -2731 131 1 259 244 285 8 chr9 125476170 125476211 -16795233 + MIR SINE MIR 102 130 -132 249 108 0 0 chr9 125476211 125476248 -16795196 + (TAA)n Simple_repeat Simple_repeat 2 38 0 259 244 285 8 chr9 125476248 125476329 -16795115 + MIR SINE MIR 130 258 -4 286 87 0 0 chr9 125476336 125476382 -16795062 + MADE1 DNA Mariner 1 46 -34 440 231 46 113 chr9 125477744 125477982 -16793462 - LTR67 LTR ERVL -8 549 328 1563 151 3 0 chr9 125478537 125478829 -16792615 + L1 LINE L1 4540 4832 -1314 8729 127 4 23 chr9 125478836 125480336 -16791108 - L1P LINE L1 -4041 2105 634 1001 158 5 0 chr9 125480336 125480520 -16790924 + L1MA5 LINE L1 6110 6294 -6 24 0 0 0 chr9 125480520 125480544 -16790900 + AT_rich Low_complexity Low_complexity 1 24 0 294 265 43 26 chr9 125480552 125480669 -16790775 + MLT1J LTR MaLR 333 451 -60 337 150 5 0 chr9 125480684 125480767 -16790677 + L1M4 LINE L1 1234 1322 -5224 1481 206 61 11 chr9 125480814 125481286 -16790158 + L1M4 LINE L1 4756 5251 -1393 501 68 0 0 chr9 125481285 125481359 -16790085 + L1P LINE L1 4478 4551 -1595 * 5479 84 39 0 chr9 125481359 125482135 -16789309 - HERVK9 LTR ERVK -3997 1919 1114 3768 97 7 26 chr9 125482137 125482716 -16788728 - HERVK9 LTR ERVK -5348 568 1 3550 104 8 4 chr9 125482716 125483225 -16788219 - MER9 LTR ERVK 0 511 1 1013 207 7 41 chr9 125483235 125483505 -16787939 + L1M4 LINE L1 5267 5527 -1117 655 124 0 0 chr9 125483504 125483609 -16787835 + L1M2 LINE L1 5519 5623 -689 * 1408 217 21 9 chr9 125483617 125483938 -16787506 + L1MC1 LINE L1 5983 6308 -20 1787 175 3 7 chr9 125483938 125484241 -16787203 - AluJo SINE Alu -10 302 1 33 25 0 0 chr9 125484251 125484291 -16787153 + AT_rich Low_complexity Low_complexity 1 40 0 1666 188 16 41 chr9 125484745 125485112 -16786332 - MLT1A1 LTR MaLR -7 358 1 486 245 84 7 chr9 125485228 125485371 -16786073 - MER5B DNA MER1_type -3 175 22 246 261 0 43 chr9 125485796 125485865 -16785579 + MER5A DNA MER1_type 9 74 -115 198 191 0 0 chr9 125485905 125485952 -16785492 + GA-rich Low_complexity Low_complexity 2 48 0 21 0 0 0 chr9 125486143 125486164 -16785280 + AT_rich Low_complexity Low_complexity 1 21 0 495 274 134 6 chr9 125486683 125486840 -16784604 + MIR SINE MIR 86 262 0 631 296 11 0 chr9 125486902 125487078 -16784366 + MER5B DNA MER1_type 1 178 0 4006 23 0 4 chr9 125488111 125488629 -16782815 - L1P LINE L1 -2916 3230 2715 7770 19 0 1 chr9 125488629 125489746 -16781698 + L1PA3 LINE L1 5041 6153 -2 30 0 0 0 chr9 125489747 125489777 -16781667 + AT_rich Low_complexity Low_complexity 1 30 0 185 332 69 47 chr9 125491466 125491743 -16779701 + L2 LINE L2 1567 1849 -1465 1218 141 19 0 chr9 125491844 125492050 -16779394 + L1 LINE L1 4059 4268 -1878 2210 130 7 0 chr9 125492494 125492802 -16778642 - AluSg SINE Alu 0 310 1 554 290 74 98 chr9 125492936 125492978 -16778466 + L1MEd LINE L1 50 92 -6027 2489 58 0 3 chr9 125492978 125493273 -16778171 - AluY SINE Alu -17 294 1 554 290 74 98 chr9 125493273 125494208 -16777236 + L1MEd LINE L1 92 1003 -5116 2112 87 0 0 chr9 125494221 125494509 -16776935 - L1PB1 LINE L1 0 6151 5864 233 114 0 0 chr9 125494578 125494613 -16776831 - THE1A LTR MaLR 0 355 321 2258 115 74 0 chr9 125494627 125494966 -16776478 - THE1B LTR MaLR 0 364 1 1685 199 13 3 chr9 125495029 125495401 -16776043 + L1MA9 LINE L1 4922 5297 -849 180 0 0 0 chr9 125495401 125495421 -16776023 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2020 142 3 0 chr9 125495444 125495732 -16775712 + AluSx SINE Alu 1 289 -23 240 135 0 0 chr9 125495761 125495798 -16775646 - THE1C LTR MaLR 0 428 392 341 43 0 0 chr9 125495803 125495849 -16775595 + AluSp SINE Alu 87 132 -171 2238 114 7 0 chr9 125495851 125496158 -16775286 + AluSp SINE Alu 1 309 -4 1748 113 69 33 chr9 125496178 125496513 -16774931 - THE1C LTR MaLR -28 347 1 4468 167 33 24 chr9 125496513 125497448 -16773996 + L1MA9 LINE L1 5331 6274 -38 377 282 86 9 chr9 125497456 125497807 -16773637 + L1MEd LINE L1 1142 1549 -4761 216 257 0 0 chr9 125498055 125498125 -16773319 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 2111 112 0 3 chr9 125498129 125498446 -16772998 + AluSq SINE Alu 1 316 0 252 329 13 13 chr9 125498460 125498539 -16772905 + L2 LINE L2 3193 3271 -1 397 258 205 7 chr9 125498567 125498718 -16772726 + MIR SINE MIR 12 192 -70 297 292 58 15 chr9 125499474 125499611 -16771833 - L1M4 LINE L1 -3280 2866 2724 314 193 59 59 chr9 125500080 125500199 -16771245 + L1MC5 LINE L1 7811 7929 -32 396 257 45 19 chr9 125501133 125501294 -16770150 - L1ME3A LINE L1 -287 5883 5719 281 281 79 44 chr9 125501343 125501457 -16769987 + MIR SINE MIR 74 191 -71 202 224 15 0 chr9 125501518 125501585 -16769859 + (TA)n Simple_repeat Simple_repeat 2 69 0 712 292 51 0 chr9 125501707 125501902 -16769542 - MIR SINE MIR -6 256 52 21 36 0 0 chr9 125502015 125502043 -16769401 + AT_rich Low_complexity Low_complexity 1 28 0 218 184 0 0 chr9 125502628 125502666 -16768778 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 180 176 0 0 chr9 125503026 125503060 -16768384 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1528 154 75 0 chr9 125503363 125503681 -16767763 + L1MA8 LINE L1 5945 6286 -5 201 390 18 6 chr9 125503825 125503994 -16767450 + GA-rich Low_complexity Low_complexity 5 175 0 412 293 78 35 chr9 125504584 125504816 -16766628 + MIR SINE MIR 21 262 0 18334 155 69 10 chr9 125504828 125508577 -16762867 + L1M1 LINE L1 15 3984 -3581 1481 87 37 17 chr9 125508580 125508821 -16762623 + L1M1 LINE L1 3101 3346 -4219 3611 243 65 39 chr9 125508823 125510330 -16761114 + L1M1 LINE L1 3988 5533 -2032 8109 71 9 2 chr9 125510345 125512202 -16759242 + L1PA7 LINE L1 4289 6150 -4 38 0 0 0 chr9 125512204 125512242 -16759202 + AT_rich Low_complexity Low_complexity 1 38 0 2452 51 0 7 chr9 125512538 125512833 -16758611 + AluY SINE Alu 1 293 -18 27 29 0 0 chr9 125512913 125512947 -16758497 + AT_rich Low_complexity Low_complexity 1 34 0 2296 96 20 6 chr9 125512981 125513335 -16758109 - L1MA5A LINE L1 -3 6294 5936 281 95 0 0 chr9 125513336 125513378 -16758066 + L1 LINE L1 4700 4741 -1405 1268 165 24 59 chr9 125513605 125513859 -16757585 - AluJo SINE Alu -34 278 34 23 33 0 0 chr9 125514055 125514085 -16757359 + AT_rich Low_complexity Low_complexity 1 30 0 655 264 123 0 chr9 125515095 125515307 -16756137 + MIR SINE MIR 3 240 -22 266 327 30 10 chr9 125515863 125515964 -16755480 - L2 LINE L2 -20 3293 3191 1486 138 4 36 chr9 125516395 125516671 -16754773 - L1MA7 LINE L1 -226 6065 5799 1038 133 62 0 chr9 125516671 125516879 -16754565 + L1MA7 LINE L1 6067 6290 -1 2990 74 28 19 chr9 125517219 125517650 -16753794 + L1PA10 LINE L1 5734 6168 0 396 263 18 42 chr9 125517741 125517875 -16753569 + MIR SINE MIR 39 170 -63 1405 210 47 69 chr9 125518099 125518504 -16752940 + MSTD LTR MaLR 1 396 0 22 80 0 0 chr9 125518629 125518679 -16752765 + AT_rich Low_complexity Low_complexity 1 50 0 563 299 39 14 chr9 125519047 125519254 -16752190 - MIR SINE MIR -50 212 1 892 257 28 28 chr9 125519522 125519775 -16751669 + MIR SINE MIR 3 255 -7 309 375 9 0 chr9 125519974 125520086 -16751358 + L2 LINE L2 3160 3272 0 713 270 8 48 chr9 125520290 125520538 -16750906 + MIR SINE MIR 16 253 -9 905 180 33 0 chr9 125520920 125521103 -16750341 + L1MB1 LINE L1 5979 6167 -1 2547 55 0 10 chr9 125521366 125521673 -16749771 - AluY SINE Alu -7 304 1 2291 123 0 0 chr9 125522581 125522889 -16748555 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr9 125523326 125523354 -16748090 + AT_rich Low_complexity Low_complexity 1 28 0 393 75 0 0 chr9 125524731 125524784 -16746660 + (TG)n Simple_repeat Simple_repeat 2 54 0 754 242 20 89 chr9 125525535 125525882 -16745562 - MER92B LTR ERV1 0 636 314 601 102 0 11 chr9 125525885 125525973 -16745471 - MER92B LTR ERV1 -549 87 1 338 305 93 53 chr9 125526668 125526914 -16744530 - MIR SINE MIR 0 262 7 251 301 81 59 chr9 125527177 125527400 -16744044 - MIR SINE MIR 0 262 30 186 103 0 0 chr9 125527499 125527528 -16743916 + (GAA)n Simple_repeat Simple_repeat 2 30 0 2255 252 50 71 chr9 125528256 125530082 -16741362 + L1M2a LINE L1 1587 3086 -4081 1963 178 33 6 chr9 125530069 125530725 -16740719 + L1MA9 LINE L1 4941 5617 -674 * 2022 117 0 14 chr9 125530730 125531020 -16740424 - AluSg SINE Alu -24 286 1 1168 240 141 27 chr9 125531060 125531535 -16739909 - LTR10B LTR ERV1 -4 543 15 1614 236 82 52 chr9 125531561 125532155 -16739289 + LTR9 LTR ERV1 1 612 0 2474 175 31 57 chr9 125532159 125532332 -16739112 + L1MA9 LINE L1 5609 5785 -527 1420 229 29 10 chr9 125532332 125532638 -16738806 + AluJo SINE Alu 1 312 0 2474 175 31 57 chr9 125532638 125532768 -16738676 + L1MA9 LINE L1 5785 5917 -395 450 0 0 0 chr9 125532768 125532818 -16738626 + (TG)n Simple_repeat Simple_repeat 2 51 0 2474 175 31 57 chr9 125532818 125533298 -16738146 + L1MA9 LINE L1 5917 6292 -20 5407 135 24 24 chr9 125533299 125534222 -16737222 + MER49 LTR ERV1 1 923 0 278 102 20 20 chr9 125535303 125535352 -16736092 - L1MA7 LINE L1 -194 6097 6049 204 40 0 0 chr9 125535408 125535433 -16736011 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 201 159 0 0 chr9 125535992 125536036 -16735408 + CT-rich Low_complexity Low_complexity 1 44 0 1466 187 67 48 chr9 125536060 125536373 -16735071 + MLT1A1 LTR MaLR 1 324 -41 2023 124 0 3 chr9 125536373 125536679 -16734765 - AluSx SINE Alu 0 305 1 1466 187 67 48 chr9 125536679 125536722 -16734722 + MLT1A1 LTR MaLR 324 365 0 252 0 0 0 chr9 125537911 125537939 -16733505 + (TG)n Simple_repeat Simple_repeat 2 29 0 1809 168 0 14 chr9 125538380 125538672 -16732772 - AluJo SINE Alu -24 288 1 2287 109 0 6 chr9 125538765 125539077 -16732367 - AluSx SINE Alu -2 310 1 1373 121 21 8 chr9 125539655 125539894 -16731550 + L1MA6 LINE L1 6058 6299 -1 2731 81 0 8 chr9 125540241 125540613 -16730831 - L1PB1 LINE L1 -1 6150 5782 220 128 13 51 chr9 125540613 125540691 -16730753 + (TA)n Simple_repeat Simple_repeat 1 75 0 576 84 72 17 chr9 125540768 125541012 -16730432 + (TTATA)n Simple_repeat Simple_repeat 1 257 0 194 70 42 56 chr9 125541041 125541112 -16730332 + (TA)n Simple_repeat Simple_repeat 2 71 0 302 183 122 35 chr9 125541122 125541237 -16730207 - L1PB1 LINE L1 -359 5792 5668 349 301 65 30 chr9 125541724 125541923 -16729521 - L1M4 LINE L1 -1301 4845 4640 496 77 26 0 chr9 125542026 125542104 -16729340 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 300 262 9 0 chr9 125542220 125542327 -16729117 - L1M4 LINE L1 -1536 4610 4503 326 294 41 55 chr9 125542591 125542737 -16728707 - L3 LINE CR1 -99 1478 1335 2046 196 10 13 chr9 125542983 125543380 -16728064 - MSTD LTR MaLR 0 396 1 954 45 0 0 chr9 125543389 125543499 -16727945 - AluY SINE Alu -18 293 184 804 196 16 8 chr9 125543639 125543836 -16727608 - L1MA4 LINE L1 -7 6293 6093 385 58 0 0 chr9 125543839 125543891 -16727553 + MER75B DNA T2_type 1 52 -191 272 0 0 0 chr9 125543866 125543898 -16727546 - MER75B DNA T2_type -153 90 59 * 396 245 28 9 chr9 125543915 125544021 -16727423 + MIR SINE MIR 146 253 -9 7013 234 74 61 chr9 125544167 125546079 -16725365 + L1PB4 LINE L1 1 1963 -4885 1758 158 7 37 chr9 125546079 125546376 -16725068 + AluJo SINE Alu 5 292 -20 7013 234 74 61 chr9 125546376 125547503 -16723941 + L1PB4 LINE L1 1963 3074 -3774 388 285 0 31 chr9 125547596 125547726 -16723718 + C-rich Low_complexity Low_complexity 4 129 0 10787 201 26 8 chr9 125551813 125554357 -16717087 + L1PB4 LINE L1 3081 5671 -1177 2431 154 19 62 chr9 125554357 125554503 -16716941 + L1PB4 LINE L1 6368 6519 -339 201 94 0 0 chr9 125554503 125554535 -16716909 + (CA)n Simple_repeat Simple_repeat 2 33 0 2431 154 19 62 chr9 125554535 125554890 -16716554 + L1PB4 LINE L1 6519 6857 -1 23 0 0 0 chr9 125554891 125554914 -16716530 + AT_rich Low_complexity Low_complexity 1 23 0 1811 40 9 0 chr9 125555897 125556122 -16715322 + L1PA4 LINE L1 5929 6155 0 870 187 18 18 chr9 125556381 125556552 -16714892 + MER5B DNA MER1_type 1 171 -7 304 260 39 84 chr9 125556933 125557218 -16714226 - L1ME4a LINE L1 -170 5951 5680 285 131 0 0 chr9 125557219 125557280 -16714164 + (TA)n Simple_repeat Simple_repeat 1 61 0 485 315 174 8 chr9 125557325 125557566 -16713878 - L1ME4a LINE L1 -2215 5593 5313 637 313 34 27 chr9 125557570 125557907 -16713537 - MLT1I LTR MaLR -1 408 68 1051 175 15 1 chr9 125558033 125558325 -16713119 - MER2 DNA MER2_type -4 341 14 376 303 37 22 chr9 125558326 125558650 -16712794 - L1ME4a LINE L1 -900 5246 4918 255 279 29 10 chr9 125558692 125558796 -16712648 - L1ME4a LINE L1 -1306 4840 4735 5275 104 41 32 chr9 125558902 125559030 -16712414 + L1PB3 LINE L1 5928 6053 -803 1436 194 54 18 chr9 125559030 125559309 -16712135 - AluJb SINE Alu -23 289 1 5275 104 41 32 chr9 125559309 125559752 -16711692 + L1PB3 LINE L1 6053 6517 -339 185 0 40 0 chr9 125559752 125559777 -16711667 + (TA)n Simple_repeat Simple_repeat 1 26 0 5275 104 41 32 chr9 125559777 125560120 -16711324 + L1PB3 LINE L1 6517 6855 -1 30 27 0 0 chr9 125560120 125560157 -16711287 + AT_rich Low_complexity Low_complexity 1 37 0 603 192 0 58 chr9 125560244 125560364 -16711080 - FLAM_C SINE Alu -20 123 11 471 264 14 166 chr9 125560482 125560635 -16710809 + MIR SINE MIR 20 112 -150 909 36 0 0 chr9 125560635 125560745 -16710699 + L1PA2 LINE L1 6044 6153 -2 471 264 14 166 chr9 125560745 125560875 -16710569 + MIR SINE MIR 112 260 -2 2004 147 10 0 chr9 125560993 125561292 -16710152 - AluSx SINE Alu -10 302 1 388 312 77 20 chr9 125561494 125561843 -16709601 - L1ME4a LINE L1 -1994 4152 3784 26 30 0 0 chr9 125561843 125561876 -16709568 + AT_rich Low_complexity Low_complexity 1 33 0 3159 170 82 32 chr9 125562122 125562281 -16709163 - L1MB5 LINE L1 0 6174 6024 2268 93 0 23 chr9 125562281 125562591 -16708853 + AluSx SINE Alu 1 303 -9 3159 170 82 32 chr9 125562591 125563188 -16708256 - L1MB5 LINE L1 -150 6024 5380 442 266 71 31 chr9 125563377 125563603 -16707841 - L1ME4a LINE L1 -2839 3307 3073 21 95 0 0 chr9 125563886 125563949 -16707495 + AT_rich Low_complexity Low_complexity 1 63 0 433 181 76 38 chr9 125564140 125564245 -16707199 + L1MB2 LINE L1 5897 6005 -166 * 1817 187 0 0 chr9 125564237 125564568 -16706876 - L1MD1 LINE L1 -349 5893 5563 24 0 0 0 chr9 125564733 125564757 -16706687 + AT_rich Low_complexity Low_complexity 1 24 0 2196 111 7 0 chr9 125564915 125565203 -16706241 + AluSx SINE Alu 3 292 -20 2161 150 3 15 chr9 125565658 125565999 -16705445 + MER1B DNA MER1_type 1 337 0 207 287 19 83 chr9 125566417 125566525 -16704919 - L2 LINE L2 -568 2746 2646 1060 272 128 18 chr9 125566547 125566984 -16704460 + LTR33 LTR ERVL 37 521 0 2297 125 0 0 chr9 125567188 125567500 -16703944 + AluSx SINE Alu 1 312 0 3585 175 8 6 chr9 125567563 125568193 -16703251 - MST-int LTR MaLR -252 1399 769 2243 148 39 2 chr9 125568202 125568608 -16702836 - MSTA LTR MaLR 0 428 8 182 299 15 15 chr9 125568675 125568742 -16702702 - L2 LINE L2 -2799 515 449 753 152 0 36 chr9 125568784 125568922 -16702522 - MER45A DNA AcHobo 0 178 46 681 248 27 7 chr9 125569000 125569149 -16702295 - MIR SINE MIR -95 167 16 360 317 19 0 chr9 125569267 125569371 -16702073 - MIR SINE MIR -150 112 7 5387 189 31 3 chr9 125569465 125570926 -16700518 + L1MC1 LINE L1 4821 6319 -14 349 272 18 35 chr9 125570999 125571113 -16700331 - MIR SINE MIR -119 143 32 702 94 0 0 chr9 125571126 125571222 -16700222 + L1PA5 LINE L1 3 98 -6048 * 32257 55 14 13 chr9 125571220 125572545 -16698899 + L1PA5 LINE L1 847 2170 -3984 6469 35 6 12 chr9 125572545 125573718 -16697726 + SVA Other Other 11 1373 -13 198 0 0 0 chr9 125573718 125573740 -16697704 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 6469 35 6 12 chr9 125573740 125573751 -16697693 + SVA Other Other 1373 1383 -3 32257 55 14 13 chr9 125573751 125577733 -16693711 + L1PA5 LINE L1 2170 6154 0 336 312 37 0 chr9 125577799 125577908 -16693536 - MIR SINE MIR -137 125 13 904 18 9 0 chr9 125578348 125578458 -16692986 - L1PA4 LINE L1 -3 6152 6042 462 272 197 0 chr9 125578951 125579098 -16692346 + MIR SINE MIR 66 241 -21 220 323 118 6 chr9 125579356 125579517 -16691927 - MIR3 SINE MIR -6 202 24 285 213 0 0 chr9 125579827 125579888 -16691556 + L1MC1 LINE L1 6161 6221 -112 180 0 0 0 chr9 125579894 125579914 -16691530 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 228 53 26 0 chr9 125579981 125580019 -16691425 + MADE1 DNA Mariner 42 80 0 2086 120 3 0 chr9 125580786 125581099 -16690345 + AluSp SINE Alu 1 314 0 415 302 189 0 chr9 125581439 125581598 -16689846 + MIR SINE MIR 4 192 -70 198 0 0 0 chr9 125582114 125582136 -16689308 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1489 29 0 0 chr9 125582136 125582306 -16689138 - L1PA3 LINE L1 -18 6137 5968 760 127 28 21 chr9 125583121 125583263 -16688181 + L1MA8 LINE L1 6146 6288 -3 241 260 0 0 chr9 125583382 125583455 -16687989 - L1MC4a LINE L1 -1875 6431 6359 695 299 41 14 chr9 125583504 125583725 -16687719 + MIR SINE MIR 31 257 -5 722 311 99 57 chr9 125584082 125584971 -16686473 - L1MC4a LINE L1 -1161 5483 4558 285 146 0 0 chr9 125586866 125586914 -16684530 + (TA)n Simple_repeat Simple_repeat 1 48 0 7074 49 13 45 chr9 125586919 125587846 -16683598 - L1PA7 LINE L1 -16 6138 5225 2206 98 0 17 chr9 125587846 125588143 -16683301 + AluY SINE Alu 1 292 -19 7074 49 13 45 chr9 125588143 125588261 -16683183 - L1PA7 LINE L1 -929 5225 5105 1514 157 0 0 chr9 125588805 125589034 -16682410 - AluSg/x SINE Alu 0 310 82 589 135 21 21 chr9 125589043 125589139 -16682305 - FRAM SINE Alu -24 152 57 901 286 48 33 chr9 125589219 125589618 -16681826 - MLT1I LTR MaLR -4 405 1 485 296 61 43 chr9 125590996 125591226 -16680218 - L2 LINE L2 -1287 2027 1794 504 276 39 19 chr9 125591237 125591555 -16679889 - L1MC4a LINE L1 -4697 1947 1525 14772 190 92 6 chr9 125591915 125596235 -16675209 + L1PA13 LINE L1 1216 5981 -816 242 93 0 23 chr9 125596270 125596313 -16675131 + (CTG)n Simple_repeat Simple_repeat 2 43 0 5463 113 4 0 chr9 125596416 125597250 -16674194 + L1PA13 LINE L1 5971 6807 -7 938 78 0 0 chr9 125597250 125597366 -16674078 - AluY SINE Alu -16 295 180 2649 121 0 2 chr9 125597366 125597780 -16673664 + L1P4 LINE L1 5341 5753 -413 309 210 0 0 chr9 125597979 125598041 -16673403 + MLT1J LTR MaLR 1 62 -443 254 268 101 43 chr9 125598047 125598185 -16673259 + MIR SINE MIR 61 206 -56 1330 169 42 88 chr9 125598816 125598987 -16672457 + L1MC1 LINE L1 2716 2893 -3253 3473 56 29 0 chr9 125598987 125599433 -16672011 - L1PA6 LINE L1 -4 6150 5692 1330 169 42 88 chr9 125599433 125599740 -16671704 + L1MC1 LINE L1 2893 3172 -2974 1176 243 72 37 chr9 125599784 125600159 -16671285 + MLT1J LTR MaLR 26 413 -98 613 177 0 40 chr9 125600431 125600555 -16670889 - MER45A DNA AcHobo -14 164 46 646 230 79 0 chr9 125600632 125600771 -16670673 - MIR SINE MIR -97 165 16 382 301 29 0 chr9 125600845 125600948 -16670496 - MIR SINE MIR -150 112 7 5900 188 26 12 chr9 125601028 125601045 -16670399 + L1MC1 LINE L1 4820 4835 -1498 2475 143 104 0 chr9 125601045 125601431 -16670013 - MSTC LTR MaLR 0 428 3 5900 188 26 12 chr9 125601431 125602752 -16668692 + L1MC1 LINE L1 4835 6172 -161 2287 144 25 3 chr9 125602752 125603107 -16668337 - MER47A DNA MER2_type 0 366 4 5900 188 26 12 chr9 125603107 125603270 -16668174 + L1MC1 LINE L1 6172 6331 -2 451 270 9 0 chr9 125603321 125603432 -16668012 - MIR SINE MIR -119 143 32 311 310 26 18 chr9 125603476 125603589 -16667855 - MIR SINE MIR -136 126 13 283 333 0 10 chr9 125603684 125603786 -16667658 + (CATA)n Simple_repeat Simple_repeat 3 103 0 452 251 293 0 chr9 125604456 125604623 -16666821 + MIR SINE MIR 13 228 -34 361 338 56 6 chr9 125604608 125604768 -16666676 + L3 LINE CR1 1325 1492 -85 * 463 313 133 0 chr9 125605740 125605906 -16665538 + MIR SINE MIR 4 191 -71 2546 63 0 0 chr9 125607183 125607486 -16663958 - AluY SINE Alu -8 303 1 1599 88 66 0 chr9 125607643 125607870 -16663574 - L1PA8 LINE L1 0 6172 5931 649 299 37 9 chr9 125607959 125608176 -16663268 + MIR SINE MIR 40 262 0 265 352 41 0 chr9 125608311 125608456 -16662988 - L1ME LINE L1 -395 5726 5576 860 293 104 75 chr9 125608612 125609480 -16661964 - L1ME LINE L1 -896 5250 4358 22 56 0 0 chr9 125609482 125609518 -16661926 + AT_rich Low_complexity Low_complexity 1 36 0 2070 183 14 119 chr9 125610304 125610868 -16660576 - L1PB4 LINE L1 -1 6155 5651 1827 151 19 3 chr9 125610845 125611169 -16660275 - L1PB4 LINE L1 -1305 4841 4513 * 1723 54 0 5 chr9 125611292 125611496 -16659948 + AluY SINE Alu 93 295 -16 1703 174 7 3 chr9 125612967 125613254 -16658190 - AluJo SINE Alu -17 295 8 185 265 96 121 chr9 125613277 125613526 -16657918 - L2 LINE L2 -189 3083 2841 1093 306 15 24 chr9 125613683 125614095 -16657349 - MLT1I LTR MaLR 0 409 2 23 97 0 0 chr9 125614630 125614702 -16656742 + AT_rich Low_complexity Low_complexity 1 72 0 6922 82 18 0 chr9 125614763 125615680 -16655764 - L1PA10 LINE L1 0 6168 5236 412 307 74 12 chr9 125616534 125616778 -16654666 - L2 LINE L2 -1262 2052 1794 494 249 92 21 chr9 125616788 125617064 -16654380 - L1M4c LINE L1 -4806 1578 1278 242 305 21 0 chr9 125617697 125617792 -16653652 + L1MEc LINE L1 1542 1638 -4758 653 242 96 38 chr9 125618200 125618596 -16652848 + L1MC5 LINE L1 7499 7917 -44 2284 108 3 3 chr9 125618643 125618949 -16652495 - AluSp SINE Alu -7 306 1 438 290 183 13 chr9 125619713 125619937 -16651507 - MIR SINE MIR 0 262 1 2079 124 0 23 chr9 125620035 125620342 -16651102 - AluSg SINE Alu 0 310 11 1727 143 4 0 chr9 125620342 125620586 -16650858 - AluSx SINE Alu -66 246 1 22793 60 5 2 chr9 125620795 125623647 -16647797 + L1PA4 LINE L1 1 2860 -3286 22469 32 0 16 chr9 125624442 125627784 -16643660 + L1PA4 LINE L1 2827 6152 -3 1826 260 46 64 chr9 125627807 125628301 -16643143 + L1M4c LINE L1 972 1474 -4908 1085 86 7 0 chr9 125628301 125628441 -16643003 + L1PB1 LINE L1 6005 6145 -6 1826 260 46 64 chr9 125628441 125628950 -16642494 + L1M4c LINE L1 1474 2051 -4331 11805 199 54 35 chr9 125629267 125632720 -16638724 + L1P3 LINE L1 203 3725 -2736 5165 102 22 20 chr9 125632727 125632885 -16638559 + L1PA10 LINE L1 5452 5608 -560 2041 122 0 37 chr9 125632885 125633205 -16638239 + AluSx SINE Alu 1 309 0 5165 102 22 20 chr9 125633205 125633760 -16637684 + L1PA10 LINE L1 5608 6168 0 425 284 29 37 chr9 125633786 125634029 -16637415 + L1M4c LINE L1 2094 2334 -4050 6408 117 14 0 chr9 125634037 125634174 -16637270 + L1PA15 LINE L1 4255 4389 -1776 267 31 0 0 chr9 125634174 125634206 -16637238 + (CA)n Simple_repeat Simple_repeat 1 32 0 6408 117 14 0 chr9 125634206 125635946 -16635498 + L1PA15 LINE L1 4389 6161 -4 1474 266 46 16 chr9 125635952 125636448 -16634996 + L1ME3 LINE L1 5350 5860 -302 377 248 38 91 chr9 125636519 125636729 -16634715 - L1ME3A LINE L1 -15 6155 5957 2426 169 10 17 chr9 125636737 125637217 -16634227 + L1 LINE L1 4135 4611 -1535 2042 142 3 16 chr9 125637221 125637387 -16634057 + AluSx SINE Alu 1 163 -149 4319 46 17 0 chr9 125637387 125637869 -16633575 + LTR2B LTR ERV1 1 490 0 2042 142 3 16 chr9 125637869 125638011 -16633433 + AluSx SINE Alu 163 305 -7 1506 190 3 37 chr9 125638023 125638323 -16633121 + AluJo SINE Alu 3 292 -20 3394 137 38 7 chr9 125638334 125638881 -16632563 - MER49 LTR ERV1 -356 567 4 275 390 6 12 chr9 125638908 125639080 -16632364 + L2 LINE L2 2847 3017 -255 219 338 13 0 chr9 125639111 125639188 -16632256 + L2 LINE L2 3231 3308 -5 188 267 0 105 chr9 125639304 125639390 -16632054 + MER5B DNA MER1_type 2 78 -100 245 294 98 10 chr9 125639556 125639658 -16631786 - L2 LINE L2 -223 3049 2939 357 248 241 14 chr9 125640496 125640637 -16630807 + MER5A DNA MER1_type 17 189 0 387 277 19 57 chr9 125640639 125640798 -16630646 + MER5A DNA MER1_type 16 168 -21 289 260 16 94 chr9 125640949 125641076 -16630368 + MIR SINE MIR 18 135 -73 1933 128 35 3 chr9 125641313 125641595 -16629849 + AluSq SINE Alu 1 291 -22 228 35 0 0 chr9 125641599 125641628 -16629816 + (GGGGA)n Simple_repeat Simple_repeat 3 31 0 537 214 0 0 chr9 125641628 125641726 -16629718 - MER81 DNA DNA -16 98 1 350 85 17 0 chr9 125641835 125641894 -16629550 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 363 252 162 0 chr9 125642012 125642123 -16629321 - L2 LINE L2 -1 3271 3143 531 316 50 53 chr9 125642200 125642557 -16628887 + L1MC/D LINE L1 4942 5297 -849 1945 161 0 0 chr9 125642561 125642846 -16628598 + AluSx SINE Alu 3 287 -25 1063 280 47 7 chr9 125642866 125643243 -16628201 + L1MC/D LINE L1 5288 5672 -490 29 47 0 0 chr9 125643472 125643515 -16627929 + AT_rich Low_complexity Low_complexity 1 43 0 421 343 6 0 chr9 125643590 125643759 -16627685 + MER117 DNA MER1_type 2 171 -26 2246 128 0 0 chr9 125644030 125644335 -16627109 + AluSx SINE Alu 1 305 -7 2738 102 3 26 chr9 125644365 125644523 -16626921 + THE1C LTR MaLR 3 163 -212 2415 72 0 41 chr9 125644523 125644841 -16626603 - AluY SINE Alu -6 305 1 2738 102 3 26 chr9 125644841 125645064 -16626380 + THE1C LTR MaLR 163 375 0 219 235 109 34 chr9 125645292 125645411 -16626033 - L2 LINE L2 -637 2677 2550 392 329 54 0 chr9 125645756 125645905 -16625539 + L2 LINE L2 3114 3270 -2 279 93 0 0 chr9 125645942 125645985 -16625459 + (CATA)n Simple_repeat Simple_repeat 2 44 0 190 162 0 54 chr9 125646417 125646454 -16624990 - MIR SINE MIR -113 149 115 1686 207 24 45 chr9 125647309 125647691 -16623753 + MLT1A2 LTR MaLR 1 374 0 482 324 14 7 chr9 125647932 125648080 -16623364 - MIR SINE MIR -108 154 6 225 167 24 0 chr9 125648154 125648196 -16623248 + L2 LINE L2 3267 3309 -4 1973 165 18 18 chr9 125648284 125648367 -16623077 + MER44D DNA MER2_type 1 83 -2408 2141 117 0 7 chr9 125648367 125648711 -16622733 + AluSx SINE Alu 1 342 0 225 0 0 0 chr9 125648710 125648735 -16622709 + (TA)n Simple_repeat Simple_repeat 1 25 0 1973 165 18 18 chr9 125648711 125648989 -16622455 + MER44D DNA MER2_type 82 609 0 187 311 54 0 chr9 125649091 125649165 -16622279 - L2 LINE L2 -298 2974 2897 371 269 194 8 chr9 125649251 125649385 -16622059 - MIR SINE MIR -14 248 90 491 250 0 0 chr9 125649640 125649740 -16621704 - L2 LINE L2 0 3313 3214 824 161 0 51 chr9 125649741 125649878 -16621566 + FLAM_A SINE Alu 4 133 0 2111 118 13 16 chr9 125649878 125650192 -16621252 + AluSq SINE Alu 1 313 0 2255 112 3 0 chr9 125650204 125650499 -16620945 + AluSp SINE Alu 1 296 -17 398 223 39 62 chr9 125650526 125650656 -16620788 - MIR3 SINE MIR -80 128 2 1428 104 65 139 chr9 125651950 125652091 -16619353 + AluJo SINE Alu 1 151 -161 2541 120 13 16 chr9 125652091 125652465 -16618979 + L1PA12 LINE L1 5794 6166 -2 1428 104 65 139 chr9 125652465 125652476 -16618968 + AluJo SINE Alu 151 161 -151 2114 69 0 47 chr9 125652476 125652774 -16618670 + AluY SINE Alu 22 306 0 1428 104 65 139 chr9 125652774 125652928 -16618516 + AluJo SINE Alu 161 286 -26 288 284 50 14 chr9 125653280 125653421 -16618023 + (TTAGGG)n Simple_repeat Simple_repeat 1 146 0 2145 104 0 11 chr9 125653530 125653810 -16617634 + AluSx SINE Alu 1 277 -35 345 24 0 0 chr9 125653815 125653857 -16617587 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2288 90 0 31 chr9 125655026 125655347 -16616097 + AluY SINE Alu 1 311 0 344 186 17 0 chr9 125655352 125655411 -16616033 - MER81 DNA DNA -54 60 1 7046 60 1 14 chr9 125656577 125657587 -16613857 + L1PA7 LINE L1 4480 5472 -682 2393 82 7 0 chr9 125657587 125657881 -16613563 + AluSg1 SINE Alu 1 296 -13 7046 60 1 14 chr9 125657881 125658556 -16612888 + L1PA7 LINE L1 5472 6154 0 2171 123 0 19 chr9 125660515 125660831 -16610613 - AluSx SINE Alu -2 310 1 537 236 61 62 chr9 125660836 125661123 -16610321 - L1MEc LINE L1 -862 1714 1438 294 208 0 194 chr9 125661340 125661424 -16610020 - MIR3 SINE MIR -9 199 153 2107 44 0 12 chr9 125661424 125661676 -16609768 + AluY SINE Alu 62 310 -1 294 208 0 194 chr9 125661676 125661735 -16609709 - MIR3 SINE MIR -55 153 84 1995 155 3 0 chr9 125663087 125663383 -16608061 + AluSx SINE Alu 1 297 -15 677 328 175 11 chr9 125663419 125663968 -16607476 - L2 LINE L2 -1690 1624 986 599 219 18 0 chr9 125663974 125664088 -16607356 + FLAM_A SINE Alu 6 121 -21 229 188 62 0 chr9 125664784 125664832 -16606612 - MIR SINE MIR -101 161 111 234 148 0 0 chr9 125665318 125665372 -16606072 + (A)n Simple_repeat Simple_repeat 1 54 0 438 230 71 0 chr9 125665495 125665608 -16605836 - MIR3 SINE MIR -30 178 58 230 231 15 15 chr9 125666282 125666347 -16605097 - MIR3 SINE MIR -50 158 94 207 293 0 0 chr9 125666424 125666482 -16604962 - MIR SINE MIR 0 262 205 2406 93 0 0 chr9 125666713 125667014 -16604430 + AluSg SINE Alu 1 301 -9 273 292 131 30 chr9 125667067 125667235 -16604209 + MARNA DNA Mariner 31 215 -371 2261 114 0 13 chr9 125667706 125668022 -16603422 + AluSq SINE Alu 1 312 -1 2005 130 67 0 chr9 125668495 125668811 -16602633 + MER1B DNA MER1_type 1 337 0 2374 94 0 0 chr9 125669045 125669342 -16602102 + AluSx SINE Alu 1 297 -15 1502 199 21 3 chr9 125669779 125670065 -16601379 - AluJo SINE Alu -21 291 1 1112 213 4 51 chr9 125671758 125672031 -16599413 + AluJo SINE Alu 1 260 -52 2535 62 0 3 chr9 125672073 125672381 -16599063 + AluY SINE Alu 1 307 -4 1925 144 3 3 chr9 125673348 125673633 -16597811 + AluSx SINE Alu 1 285 -27 2846 166 34 88 chr9 125673687 125673806 -16597638 - L1MD2 LINE L1 -2 6357 6233 1726 163 36 13 chr9 125673806 125674107 -16597337 - AluJb SINE Alu -4 308 1 2846 166 34 88 chr9 125674107 125674730 -16596714 - L1MD2 LINE L1 -126 6233 5655 1206 224 40 37 chr9 125674895 125675194 -16596250 - MLT1E LTR MaLR 0 593 294 2304 142 35 26 chr9 125675194 125675616 -16595828 + MSTB LTR MaLR 1 426 0 3223 149 4 0 chr9 125675616 125676127 -16595317 + MSTB-int LTR MaLR 1 513 -1138 24 0 0 0 chr9 125678278 125678302 -16593142 + AT_rich Low_complexity Low_complexity 1 24 0 44 20 0 0 chr9 125679494 125679545 -16591899 + AT_rich Low_complexity Low_complexity 1 51 0 2318 92 7 0 chr9 125679954 125680247 -16591197 - AluSx SINE Alu -17 295 1 207 0 0 0 chr9 125680408 125680431 -16591013 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 1943 108 32 7 chr9 125680432 125680709 -16590735 - AluSg SINE Alu -26 284 1 2381 41 0 35 chr9 125681430 125681746 -16589698 + SVA Other Other 1 305 -1081 2332 98 3 10 chr9 125683298 125683605 -16587839 - AluSx SINE Alu -7 305 1 1107 230 70 40 chr9 125683794 125684168 -16587276 - MLT1B LTR MaLR -5 385 1 278 308 213 0 chr9 125684257 125684426 -16587018 + MIR SINE MIR 11 215 -47 471 171 0 0 chr9 125684426 125684502 -16586942 + AluJ/FLAM SINE Alu 1 76 -236 4330 47 0 4 chr9 125684502 125685016 -16586428 + MER11D LTR ERVK 1 512 -385 238 213 75 117 chr9 125685678 125685830 -16585614 + L1ME4a LINE L1 5935 6079 -42 2321 93 0 7 chr9 125685830 125686131 -16585313 - AluSx SINE Alu -13 299 1 238 213 75 117 chr9 125686131 125686166 -16585278 + L1ME4a LINE L1 6079 6114 -7 352 208 56 42 chr9 125686236 125686380 -16585064 + MLT1I LTR MaLR 47 192 -357 363 271 19 84 chr9 125686487 125686642 -16584802 + MLT1I LTR MaLR 230 374 -35 376 318 117 21 chr9 125686650 125687223 -16584221 + L1M4 LINE L1 4431 5058 -1088 1186 131 0 0 chr9 125687225 125687393 -16584051 - AluSg/x SINE Alu -16 294 127 2378 40 0 0 chr9 125687494 125687767 -16583677 - AluY SINE Alu -38 273 1 1360 241 75 15 chr9 125687813 125688212 -16583232 - L1M4 LINE L1 -2266 3880 3458 686 224 23 11 chr9 125688240 125688414 -16583030 + LTR41 LTR ERVL 4 179 -594 319 190 12 17 chr9 125688866 125688946 -16582498 + LTR41 LTR ERVL 705 794 -1 436 243 70 117 chr9 125688948 125689196 -16582248 + MLT1F1 LTR MaLR 25 285 -269 255 143 0 0 chr9 125689203 125689245 -16582199 - MSTB LTR MaLR 0 426 385 2401 85 7 0 chr9 125689247 125689554 -16581890 + AluSc SINE Alu 1 309 0 896 156 78 12 chr9 125689579 125689746 -16581698 - MSTB LTR MaLR -25 401 224 1223 123 0 0 chr9 125689850 125690021 -16581423 + AluSg/x SINE Alu 127 297 -13 189 348 73 0 chr9 125690158 125690272 -16581172 + MIR SINE MIR 20 140 -68 313 203 57 26 chr9 125690432 125690538 -16580906 - MIR SINE MIR -65 143 37 3652 120 9 6 chr9 125690543 125691068 -16580376 - MER1A DNA MER1_type 0 527 1 472 199 41 87 chr9 125691321 125691348 -16580096 - MIR SINE MIR -62 200 173 893 166 25 75 chr9 125691348 125691547 -16579897 - MER5A DNA MER1_type 0 189 1 472 199 41 87 chr9 125691547 125691715 -16579729 - MIR SINE MIR -89 173 14 2299 99 3 0 chr9 125691745 125692037 -16579407 + AluSx SINE Alu 1 293 -19 1362 124 221 8 chr9 125692086 125692335 -16579109 - AluJb SINE Alu 0 302 1 6756 83 23 40 chr9 125692672 125693928 -16577516 + SVA Other Other 433 1385 -1 2141 121 17 0 chr9 125694000 125694290 -16577154 + AluSx SINE Alu 1 295 -17 2077 106 13 48 chr9 125695352 125695664 -16575780 + AluSx SINE Alu 1 301 -11 24 0 0 0 chr9 125696094 125696118 -16575326 + AT_rich Low_complexity Low_complexity 1 24 0 1727 189 0 14 chr9 125696782 125697079 -16574365 - AluJb SINE Alu -14 298 6 743 195 65 16 chr9 125697553 125697738 -16573706 + L1MC5 LINE L1 7724 7917 -44 588 229 104 15 chr9 125697984 125698185 -16573259 + MIR SINE MIR 40 258 -4 987 249 29 0 chr9 125698940 125699181 -16572263 - MIR SINE MIR -10 252 5 887 114 30 15 chr9 125699789 125699920 -16571524 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr9 125700725 125700747 -16570697 + AT_rich Low_complexity Low_complexity 1 22 0 1908 164 0 19 chr9 125700932 125701243 -16570201 - AluJo SINE Alu -7 305 1 481 266 0 16 chr9 125701415 125701539 -16569905 + L2 LINE L2 3191 3312 -1 279 211 0 0 chr9 125701539 125701591 -16569853 + L2 LINE L2 3261 3312 -1 21 0 0 0 chr9 125701628 125701649 -16569795 + AT_rich Low_complexity Low_complexity 1 21 0 2574 70 3 0 chr9 125701738 125702050 -16569394 + AluSp SINE Alu 1 313 0 209 200 100 71 chr9 125702501 125702571 -16568873 - MIR SINE MIR 0 262 191 21 36 0 0 chr9 125703105 125703133 -16568311 + AT_rich Low_complexity Low_complexity 1 28 0 2323 93 10 0 chr9 125703142 125703442 -16568002 + AluSx SINE Alu 1 303 -9 1896 151 69 9 chr9 125703477 125703827 -16567617 - L1MB7 LINE L1 -41 6143 5773 2292 88 3 3 chr9 125704272 125704566 -16566878 - AluSp SINE Alu -19 294 1 197 304 59 59 chr9 125704589 125704691 -16566753 + L2 LINE L2 3141 3242 -30 900 236 21 30 chr9 125704913 125705150 -16566294 - MIR SINE MIR 0 262 28 2221 104 0 13 chr9 125705155 125705453 -16565991 - AluY SINE Alu -17 294 1 277 283 58 75 chr9 125705616 125705736 -16565708 - MIR3 SINE MIR -49 159 42 31 0 0 0 chr9 125706650 125706681 -16564763 + AT_rich Low_complexity Low_complexity 1 31 0 6895 62 9 61 chr9 125706896 125709305 -16562139 + SVA Other Other 1 1386 0 492 18 0 0 chr9 125709369 125709426 -16562018 + (TG)n Simple_repeat Simple_repeat 2 58 0 2206 104 0 23 chr9 125709426 125709735 -16561709 - AluSq SINE Alu -11 302 1 2148 113 3 23 chr9 125710090 125710399 -16561045 - AluSx SINE Alu -9 303 1 2220 106 0 0 chr9 125710622 125710904 -16560540 + AluSx SINE Alu 1 282 -30 368 20 20 0 chr9 125710907 125710956 -16560488 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 643 219 18 0 chr9 125711125 125711239 -16560205 - FLAM_A SINE Alu -21 121 6 858 324 175 11 chr9 125711245 125711794 -16559650 + L2 LINE L2 986 1624 -1690 2228 65 0 81 chr9 125711830 125712152 -16559292 - AluY SINE Alu -15 296 1 408 356 58 4 chr9 125712152 125712413 -16559031 + L2 LINE L2 3023 3297 -16 998 174 0 6 chr9 125712446 125712607 -16558837 - AluJo SINE Alu -152 160 1 856 300 157 20 chr9 125712636 125713083 -16558361 + L2 LINE L2 2322 2829 -485 2050 109 32 3 chr9 125713131 125713415 -16558029 - AluSx SINE Alu -20 292 1 21 89 0 0 chr9 125713516 125713572 -16557872 + AT_rich Low_complexity Low_complexity 1 56 0 1705 145 57 18 chr9 125713961 125714244 -16557200 + AluJb SINE Alu 2 295 -17 1161 145 0 0 chr9 125714335 125714514 -16556930 - AluSg/x SINE Alu 0 312 134 1685 201 0 7 chr9 125715036 125715344 -16556100 - AluJb SINE Alu -1 311 6 634 207 91 6 chr9 125715956 125716115 -16555329 + MER58A DNA MER1_type 49 223 -1 388 347 94 37 chr9 125716156 125716823 -16554621 - L2 LINE L2 -221 3051 2350 2177 121 0 0 chr9 125716875 125717172 -16554272 + AluSx SINE Alu 1 297 -15 1490 199 21 3 chr9 125717609 125717895 -16553549 - AluJo SINE Alu -21 291 1 2418 74 0 13 chr9 125718789 125719099 -16552345 - AluY SINE Alu -5 306 1 253 280 212 0 chr9 125719119 125719251 -16552193 + MIR SINE MIR 99 258 -4 2039 122 6 29 chr9 125719275 125719586 -16551858 - AluSx SINE Alu -8 304 1 2313 97 7 0 chr9 125719643 125719941 -16551503 + AluSx SINE Alu 1 300 -12 1724 121 114 11 chr9 125721734 125722014 -16549430 + AluSx SINE Alu 1 309 -3 205 333 0 0 chr9 125722118 125722184 -16549260 - L2 LINE L2 -504 2810 2745 761 248 28 0 chr9 125722213 125722358 -16549086 - AluJb SINE Alu -32 280 132 321 222 157 37 chr9 125722358 125722466 -16548978 - L2 LINE L2 -570 2744 2624 818 162 0 15 chr9 125722508 125722644 -16548800 + FRAM SINE Alu 37 170 -6 1672 174 3 42 chr9 125724228 125724539 -16546905 + AluJo SINE Alu 1 299 -13 2311 86 3 0 chr9 125724542 125724833 -16546611 + AluY SINE Alu 1 292 -19 1627 235 58 64 chr9 125724992 125725100 -16546344 + L1MC4 LINE L1 7434 7541 -501 2259 110 3 0 chr9 125725100 125725401 -16546043 + AluSx SINE Alu 1 302 -10 1627 235 58 64 chr9 125725401 125725900 -16545544 + L1MC4 LINE L1 7541 8037 -5 381 267 30 46 chr9 125725937 125726068 -16545376 - MIR3 SINE MIR -23 185 57 304 53 0 0 chr9 125726068 125726106 -16545338 - MADE1 DNA Mariner -42 38 1 784 194 38 5 chr9 125726196 125726382 -16545062 - L1MB5 LINE L1 -30 6144 5953 * 2001 153 31 31 chr9 125726370 125726397 -16545047 - L1MB5 LINE L1 -282 5892 5867 2102 117 0 7 chr9 125726397 125726719 -16544725 - AluSx SINE Alu 0 320 1 2001 153 31 31 chr9 125726719 125727084 -16544360 - L1MB5 LINE L1 -307 5867 5479 758 217 0 7 chr9 125727099 125727237 -16544207 + FRAM SINE Alu 28 164 -12 794 228 49 0 chr9 125727239 125727423 -16544021 - L1MB5 LINE L1 -709 5471 5279 372 268 76 34 chr9 125727617 125727912 -16543532 - L1MC5 LINE L1 -733 7228 6931 370 158 0 0 chr9 125727936 125727993 -16543451 - AluJ/FLAM SINE Alu -225 77 21 2295 263 133 44 chr9 125728028 125728271 -16543173 - L1MC4a LINE L1 -1034 6774 6554 2166 116 7 3 chr9 125728271 125728574 -16542870 - AluSq SINE Alu -9 304 1 2295 263 133 44 chr9 125728574 125729560 -16541884 - L1MC4a LINE L1 -1254 6554 5436 289 269 84 66 chr9 125729564 125730003 -16541441 - L1MC4a LINE L1 -812 5334 4888 * 340 310 7 7 chr9 125730002 125730147 -16541297 + L1M4 LINE L1 4979 5123 -1023 1967 143 3 0 chr9 125730389 125730683 -16540761 + AluJb SINE Alu 1 295 -17 930 243 32 108 chr9 125731352 125731542 -16539902 + L2 LINE L2 1561 1764 -1550 2389 100 0 10 chr9 125731542 125731852 -16539592 - AluSx SINE Alu -5 307 1 930 243 32 108 chr9 125731852 125732159 -16539285 + L2 LINE L2 1764 2020 -1294 274 264 23 23 chr9 125732149 125732236 -16539208 + L2 LINE L2 3227 3313 0 * 191 234 43 0 chr9 125732328 125732375 -16539069 - L2 LINE L2 0 3313 3265 261 250 0 0 chr9 125732428 125732476 -16538968 + L2 LINE L2 3132 3179 -93 1837 160 3 10 chr9 125732643 125732943 -16538501 - AluJb SINE Alu -14 298 1 2325 68 7 3 chr9 125732947 125733240 -16538204 - AluY SINE Alu -17 294 1 2069 122 3 3 chr9 125733741 125734027 -16537417 + AluSx SINE Alu 1 286 -26 502 156 184 28 chr9 125734111 125734252 -16537192 + L1MD3 LINE L1 7822 7984 -11 408 321 51 7 chr9 125734368 125734505 -16536939 + MIR SINE MIR 47 189 -73 2471 55 3 0 chr9 125734508 125734801 -16536643 + AluY SINE Alu 1 294 -17 978 287 97 56 chr9 125734811 125735127 -16536317 - L2 LINE L2 -8 3305 2951 2279 115 0 0 chr9 125735127 125735432 -16536012 + AluSx SINE Alu 1 305 -7 978 287 97 56 chr9 125735432 125735611 -16535833 - L2 LINE L2 -362 2951 2781 1914 148 0 30 chr9 125735690 125735995 -16535449 - AluJb SINE Alu -14 298 3 443 223 83 0 chr9 125736026 125736147 -16535297 - MER104 DNA Tc2 -2 178 48 232 276 122 24 chr9 125736325 125736448 -16534996 + MIR SINE MIR 125 259 -3 1160 98 257 0 chr9 125736558 125736741 -16534703 + MER30 DNA MER1_type 1 230 0 320 50 0 0 chr9 125737218 125737258 -16534186 - MADE1 DNA Mariner 0 80 41 2280 110 0 10 chr9 125737270 125737580 -16533864 + AluSx SINE Alu 1 307 -5 1050 101 44 13 chr9 125737583 125737741 -16533703 + MER30 DNA MER1_type 65 227 -3 293 128 21 0 chr9 125737741 125737786 -16533658 - MADE1 DNA Mariner -33 47 2 2193 118 3 0 chr9 125738998 125739295 -16532149 + AluSp SINE Alu 2 299 -14 2175 104 43 0 chr9 125739620 125739919 -16531525 - AluSx SINE Alu 0 312 1 2241 102 3 10 chr9 125742113 125742418 -16529026 - AluSg SINE Alu -7 303 1 2565 56 0 3 chr9 125742455 125742760 -16528684 - AluSp SINE Alu -9 304 1 1340 155 66 47 chr9 125743006 125743092 -16528352 - MER33 DNA MER1_type -2261 324 241 2020 122 10 23 chr9 125743092 125743396 -16528048 + AluSx SINE Alu 1 300 -12 1340 155 66 47 chr9 125743396 125743626 -16527818 - MER33 DNA MER1_type -2344 241 2 308 43 0 21 chr9 125745817 125745864 -16525580 + (TCC)n Simple_repeat Simple_repeat 2 47 0 239 226 31 157 chr9 125746596 125746755 -16524689 - MIR SINE MIR -6 256 118 2142 101 0 13 chr9 125746781 125747087 -16524357 + AluSg SINE Alu 2 303 -7 653 182 7 0 chr9 125747454 125747597 -16523847 + (TA)n Simple_repeat Simple_repeat 1 144 0 2121 104 3 20 chr9 125747597 125747895 -16523549 - AluSx SINE Alu -19 293 1 1809 143 14 0 chr9 125747994 125748280 -16523164 - AluSx SINE Alu -21 291 2 454 289 164 4 chr9 125748281 125748506 -16522938 + L2 LINE L2 3051 3311 -2 21 0 0 0 chr9 125748929 125748950 -16522494 + AT_rich Low_complexity Low_complexity 1 21 0 861 239 83 22 chr9 125750222 125750532 -16520912 + L1ME1 LINE L1 5835 6162 -4 23 0 0 0 chr9 125753149 125753172 -16518272 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr9 125753713 125753739 -16517705 + (TCC)n Simple_repeat Simple_repeat 2 27 0 2353 71 0 0 chr9 125754042 125754336 -16517108 - AluSq SINE Alu -19 294 1 2466 39 0 26 chr9 125754658 125754964 -16516480 - AluY SINE Alu -13 298 1 2379 86 0 0 chr9 125755228 125755529 -16515915 - AluSx SINE Alu -11 301 1 2658 36 7 0 chr9 125755548 125755854 -16515590 - AluY SINE Alu -3 308 1 21 0 0 0 chr9 125756342 125756363 -16515081 + AT_rich Low_complexity Low_complexity 1 21 0 547 258 48 16 chr9 125756830 125756954 -16514490 + L2 LINE L2 3145 3272 0 21 0 0 0 chr9 125757608 125757629 -16513815 + AT_rich Low_complexity Low_complexity 1 21 0 259 275 11 66 chr9 125757806 125757897 -16513547 + MIR3 SINE MIR 89 174 -34 241 382 56 7 chr9 125761386 125761530 -16509914 + L2 LINE L2 2608 2758 -556 2255 111 3 0 chr9 125762179 125762485 -16508959 + AluSp SINE Alu 1 307 -6 2123 145 0 0 chr9 125762487 125762797 -16508647 + AluSg SINE Alu 1 310 0 231 342 13 0 chr9 125763100 125763179 -16508265 + L2 LINE L2 3225 3304 -9 2231 102 20 0 chr9 125763438 125763742 -16507702 + AluY SINE Alu 1 310 -1 2137 159 45 3 chr9 125764337 125764670 -16506774 + MER7A DNA MER2_type 2 346 0 1640 128 6 116 chr9 125765145 125765472 -16505972 - AluJo SINE Alu -8 304 14 1691 163 14 0 chr9 125765621 125765897 -16505547 + AluJb SINE Alu 1 280 -32 243 0 0 0 chr9 125765899 125765926 -16505518 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 316 252 42 70 chr9 125765926 125766069 -16505375 - MIR SINE MIR -67 195 57 2300 102 0 13 chr9 125766127 125766295 -16505149 - AluSq SINE Alu -12 301 137 2212 85 41 0 chr9 125766295 125766588 -16504856 - AluSp SINE Alu -8 305 1 2300 102 0 13 chr9 125766588 125766724 -16504720 - AluSq SINE Alu -176 137 1 2318 58 41 17 chr9 125766762 125767056 -16504388 + AluY SINE Alu 1 301 -10 326 191 59 0 chr9 125767111 125767179 -16504265 + L1ME3A LINE L1 6094 6165 -5 193 300 100 55 chr9 125767567 125767677 -16503767 + L2 LINE L2 2503 2617 -697 2200 108 3 0 chr9 125768346 125768664 -16502780 - AluSx SINE Alu 0 319 1 1116 111 6 44 chr9 125768820 125769001 -16502443 - AluSg/x SINE Alu -2 308 135 186 363 180 26 chr9 125769373 125769717 -16501727 - L2 LINE L2 -635 2679 2283 644 249 154 0 chr9 125769957 125770158 -16501286 + MIR SINE MIR 1 232 -30 515 339 122 21 chr9 125770289 125770847 -16500597 + L2 LINE L2 1860 2473 -841 180 111 0 0 chr9 125771403 125771430 -16500014 + (CATA)n Simple_repeat Simple_repeat 2 28 0 190 317 228 0 chr9 125771437 125771538 -16499906 + L2 LINE L2 3122 3245 -27 233 213 82 0 chr9 125772765 125772826 -16498618 - L1MB4 LINE L1 -1 6179 6114 577 163 0 0 chr9 125772829 125772915 -16498529 - AluJ/FLAM SINE Alu -225 87 2 2744 225 30 19 chr9 125772915 125773048 -16498396 - L1M4c LINE L1 -3105 3277 3147 2243 96 10 16 chr9 125773048 125773361 -16498083 - AluSp SINE Alu -2 311 1 2744 225 30 19 chr9 125773361 125773958 -16497486 - L1M4c LINE L1 -3235 3147 2558 1230 158 43 136 chr9 125773958 125774168 -16497276 - AluSx SINE Alu 0 302 154 2129 87 40 0 chr9 125774168 125774443 -16497001 - AluSg SINE Alu -24 286 1 1230 158 43 136 chr9 125774443 125774584 -16496860 - AluSx SINE Alu -148 154 1 2744 225 30 19 chr9 125774584 125774596 -16496848 - L1M4c LINE L1 -3824 2558 2548 2643 55 0 3 chr9 125774596 125774907 -16496537 - AluY SINE Alu -1 310 1 2744 225 30 19 chr9 125774907 125774987 -16496457 - L1M4c LINE L1 -3834 2548 2444 990 167 59 115 chr9 125775044 125775199 -16496245 - AluJo SINE Alu -24 288 155 252 0 0 0 chr9 125775199 125775227 -16496217 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 990 167 59 115 chr9 125775227 125775358 -16496086 - AluJo SINE Alu -157 155 18 440 182 0 0 chr9 125775366 125775432 -16496012 - AluJ/FLAM SINE Alu -244 68 3 4303 169 151 17 chr9 125775479 125775876 -16495568 - L1M4c LINE L1 -3961 2423 2081 2208 96 7 10 chr9 125775876 125776168 -16495276 - AluSx SINE Alu -19 293 3 4303 169 151 17 chr9 125776168 125776874 -16494570 - L1M4c LINE L1 -4303 2081 1172 3363 192 78 130 chr9 125776871 125777635 -16493809 + L1M4c LINE L1 33 836 -4546 * 261 89 67 44 chr9 125777635 125777680 -16493764 + AluJo SINE Alu 90 135 -167 3363 192 78 130 chr9 125777680 125777844 -16493600 + L1M4c LINE L1 836 1007 -4375 2211 114 7 7 chr9 125777844 125778152 -16493292 + AluSx SINE Alu 1 308 -4 3363 192 78 130 chr9 125778152 125778241 -16493203 + L1M4c LINE L1 1007 1099 -4283 2004 123 21 0 chr9 125778241 125778525 -16492919 + AluSg SINE Alu 1 290 -20 3363 192 78 130 chr9 125778525 125778659 -16492785 + L1M4c LINE L1 1099 1242 -4140 942 112 0 70 chr9 125779858 125780001 -16491443 - FLAM_C SINE Alu 0 133 1 29 0 0 0 chr9 125780001 125780030 -16491414 + AT_rich Low_complexity Low_complexity 1 29 0 917 132 63 25 chr9 125780546 125780705 -16490739 + FAM SINE Alu 1 165 -10 279 307 44 0 chr9 125780997 125781111 -16490333 + MIR SINE MIR 132 250 -12 216 0 0 0 chr9 125782693 125782717 -16488727 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2191 109 16 0 chr9 125782924 125783228 -16488216 + AluSg SINE Alu 1 309 -1 809 227 12 18 chr9 125783396 125783559 -16487885 + FRAM SINE Alu 5 166 0 2128 71 71 17 chr9 125783602 125783898 -16487546 - AluSq SINE Alu -1 312 1 2582 44 0 0 chr9 125784201 125784495 -16486949 + AluY SINE Alu 1 294 -17 1409 196 0 15 chr9 125784759 125785025 -16486419 - AluJo SINE Alu -16 296 35 616 146 0 0 chr9 125785044 125785140 -16486304 - AluSg/x SINE Alu 0 309 214 1988 90 0 23 chr9 125785140 125785406 -16486038 - AluSx SINE Alu -52 260 1 251 81 27 0 chr9 125785424 125785461 -16485983 + U3 snRNA snRNA 1 38 -179 742 87 58 0 chr9 125786519 125786623 -16484821 - HY1 scRNA scRNA -1 111 2 1744 182 87 11 chr9 125787656 125788036 -16483408 + L1MB3 LINE L1 5774 6182 -1 369 0 0 0 chr9 125788572 125788613 -16482831 + (CA)n Simple_repeat Simple_repeat 2 42 0 187 356 37 7 chr9 125788755 125788890 -16482554 - L2 LINE L2 -575 2739 2601 * 373 333 130 5 chr9 125788886 125789102 -16482342 + MIR SINE MIR 20 262 0 2329 110 3 19 chr9 125789623 125789760 -16481684 + AluSx SINE Alu 1 139 -173 2321 108 0 3 chr9 125789760 125790074 -16481370 + AluSq SINE Alu 1 313 0 2329 110 3 19 chr9 125790074 125790253 -16481191 + AluSx SINE Alu 139 312 0 211 344 75 11 chr9 125790434 125790527 -16480917 - L2 LINE L2 -307 2965 2867 339 85 0 0 chr9 125790882 125790929 -16480515 + (T)n Simple_repeat Simple_repeat 1 47 0 336 341 98 0 chr9 125791116 125791239 -16480205 + L2 LINE L2 3111 3245 -27 1713 177 3 10 chr9 125792103 125792402 -16479042 - AluJo SINE Alu -15 297 1 305 196 0 0 chr9 125792713 125792764 -16478680 + Alu SINE Alu 1 51 -248 2402 75 0 31 chr9 125792778 125793097 -16478347 - AluY SINE Alu -2 309 1 1083 165 0 0 chr9 125793111 125793275 -16478169 + FRAM SINE Alu 1 156 -20 21 0 0 0 chr9 125793587 125793608 -16477836 + AT_rich Low_complexity Low_complexity 1 21 0 260 281 148 81 chr9 125793774 125793935 -16477509 - MIR SINE MIR -16 246 66 2382 85 3 0 chr9 125793935 125794228 -16477216 - AluSc SINE Alu -15 294 1 260 281 148 81 chr9 125794228 125794276 -16477168 - MIR SINE MIR -196 66 23 526 234 114 18 chr9 125794390 125794557 -16476887 - L2 LINE L2 -9 3304 3122 292 325 166 12 chr9 125794604 125794773 -16476671 - L2 LINE L2 -3118 196 2 403 308 46 8 chr9 125795314 125795444 -16476000 + MIR SINE MIR 13 147 -115 243 262 143 12 chr9 125796058 125796142 -16475302 + MIR SINE MIR 41 135 -73 2188 54 0 0 chr9 125796938 125797197 -16474247 + AluY SINE Alu 41 299 -12 545 256 0 8 chr9 125798298 125798415 -16473029 - L2 LINE L2 -5 3308 3193 222 273 81 40 chr9 125798861 125798960 -16472484 - L2 LINE L2 -106 3207 3105 380 192 0 119 chr9 125798965 125799019 -16472425 - Tigger6 DNA MER2_type -78 1519 1460 1667 89 0 0 chr9 125799019 125799233 -16472211 + L1PA5 LINE L1 5940 6153 -1 380 192 0 119 chr9 125799233 125799257 -16472187 - Tigger6 DNA MER2_type -137 1460 1435 1736 184 3 3 chr9 125799257 125799551 -16471893 + AluJb SINE Alu 2 295 -17 380 192 0 119 chr9 125799551 125799622 -16471822 - Tigger6 DNA MER2_type -162 1435 1387 399 295 145 38 chr9 125799644 125799978 -16471466 - L2 LINE L2 -259 3054 2690 1090 292 123 16 chr9 125799989 125800420 -16471024 + L1M4b LINE L1 11 487 -6372 3509 266 56 16 chr9 125800429 125802148 -16469296 + L1M4b LINE L1 617 2396 -4563 336 197 28 14 chr9 125802214 125802285 -16469159 - L1M4 LINE L1 -3120 3026 2955 393 309 15 57 chr9 125802416 125802681 -16468763 + L1M4b LINE L1 2477 2730 -4408 1421 200 0 41 chr9 125802780 125803070 -16468374 + AluJb SINE Alu 25 302 -10 4114 235 91 22 chr9 125803072 125803657 -16467787 + L1M4b LINE L1 2787 3330 -3627 901 109 0 23 chr9 125803657 125803785 -16467659 + FLAM_C SINE Alu 2 126 -7 4114 235 91 22 chr9 125803785 125805236 -16466208 + L1M4b LINE L1 3330 4937 -2020 1558 169 14 41 chr9 125805236 125805526 -16465918 + AluJb SINE Alu 1 282 -30 1515 156 78 106 chr9 125805599 125805926 -16465518 + L1MB8 LINE L1 5716 6028 -150 2246 87 11 0 chr9 125805926 125806213 -16465231 - AluSx SINE Alu -22 290 1 1515 156 78 106 chr9 125806213 125806348 -16465096 + L1MB8 LINE L1 6028 6165 -13 1634 282 128 69 chr9 125806387 125806772 -16464672 - L2 LINE L2 -728 2586 2225 2003 141 7 0 chr9 125806772 125807076 -16464368 + AluSq SINE Alu 1 306 -7 1634 282 128 69 chr9 125807076 125807240 -16464204 - L2 LINE L2 -1089 2225 2072 2187 119 42 31 chr9 125807240 125807600 -16463844 - THE1B LTR MaLR 0 364 1 1634 282 128 69 chr9 125807600 125808052 -16463392 - L2 LINE L2 -1242 2072 1525 1968 110 57 7 chr9 125808276 125808557 -16462887 - AluSq SINE Alu -18 295 1 896 95 22 156 chr9 125808570 125808750 -16462694 - L1MA3 LINE L1 -2 6303 6159 1844 186 0 0 chr9 125808750 125809051 -16462393 - AluSx SINE Alu -10 302 2 896 95 22 156 chr9 125809051 125809101 -16462343 - L1MA3 LINE L1 -146 6159 6104 2147 118 0 0 chr9 125809157 125809444 -16462000 - AluSx SINE Alu -25 287 1 538 81 58 0 chr9 125809444 125809531 -16461913 - L1MA2 LINE L1 -162 6142 6051 2145 152 15 0 chr9 125809566 125809908 -16461536 + MER7A DNA MER2_type 2 346 0 760 187 0 0 chr9 125810272 125810395 -16461049 - FLAM_C SINE Alu -20 123 1 1512 179 6 61 chr9 125810429 125810741 -16460703 - AluSx SINE Alu -15 297 3 916 216 12 0 chr9 125810817 125810984 -16460460 + FAM SINE Alu 1 169 -6 1369 84 31 40 chr9 125810986 125811211 -16460233 - L1PA16 LINE L1 -5 6161 5939 1560 269 66 33 chr9 125811319 125812500 -16458944 + L1MEd LINE L1 2 1256 -4863 821 124 0 8 chr9 125812687 125812808 -16458636 + FLAM_C SINE Alu 12 131 -12 402 266 84 7 chr9 125813029 125813172 -16458272 - MLT1H LTR MaLR -324 225 72 289 225 0 62 chr9 125813253 125813333 -16458111 - L2 LINE L2 -188 3084 3010 802 117 7 66 chr9 125813383 125813520 -16457924 + FLAM_C SINE Alu 1 129 -4 2323 69 14 0 chr9 125813771 125814062 -16457382 - AluY SINE Alu -16 295 1 2389 79 13 0 chr9 125814258 125814563 -16456881 + AluSx SINE Alu 2 310 -2 234 0 0 0 chr9 125814945 125814971 -16456473 + (T)n Simple_repeat Simple_repeat 1 26 0 784 164 0 29 chr9 125815037 125815177 -16456267 + AluJo SINE Alu 1 136 -176 269 222 25 37 chr9 125816248 125816329 -16455115 + MIR SINE MIR 173 252 -10 * 435 312 71 7 chr9 125816327 125816481 -16454963 - MIR SINE MIR -71 191 28 387 240 77 19 chr9 125816487 125816591 -16454853 + MER91C DNA MER1_type 4 113 -27 299 336 122 53 chr9 125817162 125817953 -16453491 - L2 LINE L2 -3 3269 2364 2011 110 17 23 chr9 125817953 125818253 -16453191 + AluSx SINE Alu 1 298 -14 299 336 122 53 chr9 125818253 125818336 -16453108 - L2 LINE L2 -908 2364 2288 2247 191 28 11 chr9 125818550 125819016 -16452428 - L1ME1 LINE L1 -5 6161 5688 895 186 0 6 chr9 125819016 125819172 -16452272 + AluJo SINE Alu 136 290 -22 2228 184 113 37 chr9 125819174 125819404 -16452040 - L1ME1 LINE L1 -473 5693 5482 399 41 0 0 chr9 125819404 125819453 -16451991 + (TTTTA)n Simple_repeat Simple_repeat 1 49 0 1540 196 22 0 chr9 125819454 125819725 -16451719 - AluJb SINE Alu -33 279 3 2228 184 113 37 chr9 125819725 125820390 -16451054 - L1ME1 LINE L1 -683 5483 4749 274 287 77 72 chr9 125820420 125820544 -16450900 - MLT1L LTR MaLR -1 614 492 1211 196 0 18 chr9 125820544 125820769 -16450675 + MER58A DNA MER1_type 4 224 0 274 287 77 72 chr9 125820769 125820830 -16450614 - MLT1L LTR MaLR -123 492 433 555 157 139 0 chr9 125820830 125820938 -16450506 - FLAM_A SINE Alu -10 123 1 274 287 77 72 chr9 125820938 125821171 -16450273 - MLT1L LTR MaLR -182 433 111 315 343 114 7 chr9 125821305 125821445 -16449999 - MER5A DNA MER1_type 0 189 35 275 200 0 50 chr9 125821505 125821554 -16449890 + MER5B DNA MER1_type 1 51 -127 255 31 0 0 chr9 125821554 125821586 -16449858 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1767 146 49 4 chr9 125821587 125821854 -16449590 - AluSx SINE Alu -32 280 2 829 237 28 0 chr9 125822024 125822201 -16449243 + MER5A DNA MER1_type 4 185 -4 2244 124 0 0 chr9 125822296 125822595 -16448849 + AluSx SINE Alu 1 299 -13 678 168 7 36 chr9 125823285 125823412 -16448032 + FLAM_A SINE Alu 1 125 -177 1949 134 7 0 chr9 125823412 125823696 -16447748 - AluJb SINE Alu -25 287 2 2288 77 7 7 chr9 125825862 125826162 -16445282 + AluSc SINE Alu 1 300 -9 1266 183 13 0 chr9 125826313 125826542 -16444902 - MER46A DNA MER2_type -4 232 1 23 0 0 0 chr9 125827312 125827335 -16444109 + AT_rich Low_complexity Low_complexity 1 23 0 1863 169 0 29 chr9 125827375 125827689 -16443755 + AluJb SINE Alu 1 305 -7 332 249 74 126 chr9 125827883 125828208 -16443236 - L1ME4a LINE L1 -79 6042 5735 592 250 71 0 chr9 125828284 125828468 -16442976 - L1ME4a LINE L1 -425 5696 5500 218 316 25 13 chr9 125828887 125828966 -16442478 + L2 LINE L2 3234 3313 0 2214 92 24 3 chr9 125829197 125829490 -16441954 + AluSp SINE Alu 3 301 -12 2464 75 3 0 chr9 125831018 125831326 -16440118 + AluSp SINE Alu 2 310 -3 360 0 0 0 chr9 125831326 125831366 -16440078 + (TA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr9 125831577 125831598 -16439846 + AT_rich Low_complexity Low_complexity 1 21 0 398 311 117 6 chr9 125831609 125831789 -16439655 + MIR3 SINE MIR 7 206 -2 1448 217 20 14 chr9 125832135 125832430 -16439014 - AluJb SINE Alu -4 298 2 1925 162 0 7 chr9 125832565 125832868 -16438576 - AluSx SINE Alu -11 301 1 200 205 84 6 chr9 125833194 125833360 -16438084 + (TA)n Simple_repeat Simple_repeat 2 180 0 35 0 0 22 chr9 125833785 125833813 -16437631 + AT_rich Low_complexity Low_complexity 1 29 -16 2179 104 0 3 chr9 125833813 125834101 -16437343 - AluSq SINE Alu -26 287 1 35 0 0 22 chr9 125834101 125834118 -16437326 + AT_rich Low_complexity Low_complexity 29 45 0 2247 112 0 0 chr9 125834197 125834493 -16436951 - AluSx SINE Alu -16 296 1 1834 158 3 10 chr9 125835372 125835664 -16435780 + AluJo SINE Alu 9 298 -14 2117 138 0 0 chr9 125836096 125836393 -16435051 - AluSx SINE Alu -10 302 6 238 234 0 31 chr9 125838061 125838125 -16433319 + CT-rich Low_complexity Low_complexity 4 65 0 1660 158 23 0 chr9 125838601 125838882 -16432562 - AluSx SINE Alu 0 312 42 1027 234 74 61 chr9 125839377 125839711 -16431733 - L1ME LINE L1 -4524 1737 1409 2016 110 3 36 chr9 125839711 125840020 -16431424 - AluSx SINE Alu -13 299 1 1027 234 74 61 chr9 125840020 125840885 -16430559 - L1ME LINE L1 -4852 1409 456 281 254 167 10 chr9 125840891 125841088 -16430356 + L2 LINE L2 1721 2047 -1267 203 37 0 0 chr9 125841090 125841117 -16430327 + L2 LINE L2 2326 2352 -962 482 329 128 9 chr9 125841137 125841205 -16430239 + L2 LINE L2 2544 2603 -711 690 187 0 43 chr9 125841205 125841344 -16430100 - FLAM_C SINE Alu 0 133 1 482 329 128 9 chr9 125841344 125841494 -16429950 + L2 LINE L2 2603 2788 -526 1084 121 18 6 chr9 125841511 125841677 -16429767 - AluSg SINE Alu -142 168 1 276 246 128 50 chr9 125841684 125841863 -16429581 + L2 LINE L2 3113 3305 -8 631 267 104 9 chr9 125842152 125842373 -16429071 + MIR SINE MIR 21 262 0 2131 85 15 0 chr9 125842570 125842842 -16428602 + AluSp SINE Alu 21 296 -17 38 0 0 0 chr9 125842871 125842909 -16428535 + AT_rich Low_complexity Low_complexity 1 38 0 44 0 0 0 chr9 125843143 125843187 -16428257 + AT_rich Low_complexity Low_complexity 1 44 0 265 296 74 12 chr9 125843757 125843838 -16427606 - MIR SINE MIR -76 186 101 293 330 41 10 chr9 125844463 125844560 -16426884 - MIR SINE MIR -67 141 42 447 303 17 50 chr9 125844646 125844826 -16426618 - L1MC4 LINE L1 -620 7422 7250 1689 161 56 0 chr9 125844826 125845112 -16426332 - AluJb SINE Alu -10 302 1 447 303 17 50 chr9 125845112 125845169 -16426275 - L1MC4 LINE L1 -792 7250 7193 2421 97 3 0 chr9 125845304 125845615 -16425829 + AluSp SINE Alu 1 312 -1 1843 258 115 50 chr9 125845741 125847128 -16424316 - L1MC4a LINE L1 -787 5359 4063 2074 139 0 7 chr9 125847128 125847437 -16424007 - AluSx SINE Alu -4 308 2 1843 258 115 50 chr9 125847437 125847615 -16423829 - L1MC4a LINE L1 -2083 4063 3898 1877 142 42 3 chr9 125847615 125847904 -16423540 - AluSx SINE Alu -12 300 1 1654 146 0 111 chr9 125847904 125848245 -16423199 - AluJb SINE Alu -8 304 1 1843 258 115 50 chr9 125848245 125848356 -16423088 - L1MC4a LINE L1 -1566 4580 4478 70 88 0 0 chr9 125848364 125848546 -16422898 + AT_rich Low_complexity Low_complexity 1 182 0 284 220 83 9 chr9 125848546 125848655 -16422789 - L1MC5 LINE L1 -2 7993 7833 2074 95 49 3 chr9 125848807 125849092 -16422352 + AluSg SINE Alu 1 298 -12 1102 166 78 101 chr9 125849187 125849584 -16421860 - LTR37B LTR ERV1 0 468 81 1137 201 48 0 chr9 125849588 125849797 -16421647 + MER58A DNA MER1_type 6 224 0 21 0 0 0 chr9 125851455 125851476 -16419968 + AT_rich Low_complexity Low_complexity 1 21 0 551 261 31 31 chr9 125852135 125852205 -16419239 - MIR SINE MIR -73 189 120 1956 132 10 3 chr9 125852205 125852516 -16418928 + AluSq SINE Alu 1 313 0 551 261 31 31 chr9 125852516 125852606 -16418838 - MIR SINE MIR -141 121 29 21 0 0 0 chr9 125853072 125853093 -16418351 + AT_rich Low_complexity Low_complexity 1 21 0 416 252 37 19 chr9 125853182 125853289 -16418155 + L2 LINE L2 3189 3297 -16 2155 107 3 7 chr9 125853864 125854162 -16417282 - AluSx SINE Alu -15 297 1 308 317 28 13 chr9 125854437 125854633 -16416811 + L1ME LINE L1 5478 5672 -449 304 260 53 13 chr9 125854883 125855033 -16416411 - L1ME4a LINE L1 -4 6117 5962 557 51 0 51 chr9 125855110 125855188 -16416256 - THE1C LTR MaLR 0 364 291 537 95 0 0 chr9 125855188 125855272 -16416172 - AluSg/x SINE Alu -9 300 217 2189 73 27 37 chr9 125855272 125855600 -16415844 - THE1C LTR MaLR -50 325 1 299 210 0 60 chr9 125855630 125855730 -16415714 - L1ME4a LINE L1 -321 5800 5707 2056 143 0 3 chr9 125856758 125857058 -16414386 + AluJb SINE Alu 5 303 -9 435 318 15 15 chr9 125858084 125858216 -16413228 + MIR SINE MIR 28 159 -103 282 286 265 26 chr9 125858287 125858476 -16412968 - MIR SINE MIR -26 236 3 1906 54 8 4 chr9 125858524 125858763 -16412681 - AluY SINE Alu -11 300 61 954 263 14 19 chr9 125858905 125859118 -16412326 - MER58A DNA MER1_type -4 220 9 314 294 50 17 chr9 125859503 125859622 -16411822 + MIR SINE MIR 88 210 -52 190 276 79 13 chr9 125859658 125859734 -16411710 - MIR SINE MIR -112 150 70 1510 173 58 4 chr9 125859862 125860140 -16411304 - AluJo SINE Alu -19 293 1 1866 117 36 4 chr9 125860212 125860513 -16410931 - AluSx SINE Alu 0 310 1 180 0 0 0 chr9 125860568 125860588 -16410856 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr9 125861817 125861839 -16409605 + AT_rich Low_complexity Low_complexity 1 22 0 1744 162 41 3 chr9 125861860 125862150 -16409294 - AluSx SINE Alu -11 301 1 187 360 12 23 chr9 125862411 125862497 -16408947 - L2 LINE L2 -173 3099 3015 2221 93 0 17 chr9 125862933 125863234 -16408210 - AluSg SINE Alu -14 296 1 26 30 0 0 chr9 125863238 125863271 -16408173 + AT_rich Low_complexity Low_complexity 1 33 0 1067 207 76 88 chr9 125863528 125863714 -16407730 - L1ME3 LINE L1 -47 6115 5928 2075 119 0 7 chr9 125863714 125864008 -16407436 - AluSx SINE Alu -16 296 5 1067 207 76 88 chr9 125864008 125864277 -16407167 - L1ME3 LINE L1 -234 5928 5668 260 209 52 157 chr9 125864824 125864967 -16406477 - L1ME3 LINE L1 -605 5565 5441 2269 97 0 13 chr9 125864967 125865267 -16406177 - AluSg SINE Alu -14 296 1 260 209 52 157 chr9 125865267 125865295 -16406149 - L1ME3 LINE L1 -729 5441 5412 26 30 0 0 chr9 125865423 125865456 -16405988 + AT_rich Low_complexity Low_complexity 1 33 0 531 293 86 44 chr9 125865501 125866515 -16404929 - L1M4 LINE L1 -1042 5104 4044 1995 120 0 0 chr9 125866571 125866846 -16404598 + AluSx SINE Alu 1 275 -37 320 220 134 91 chr9 125866867 125867053 -16404391 - L1M4 LINE L1 -2149 3997 3804 2279 86 3 25 chr9 125867629 125867943 -16403501 - AluSc SINE Alu -2 307 1 193 310 28 42 chr9 125868152 125868223 -16403221 + MIR3 SINE MIR 6 75 -133 306 148 66 0 chr9 125868609 125868670 -16402774 + MER116 DNA Mariner 16 80 0 391 379 41 12 chr9 125868770 125868939 -16402505 - L2 LINE L2 -1 3271 3098 521 292 177 0 chr9 125869268 125869477 -16401967 + MIR SINE MIR 2 247 -15 21 0 0 0 chr9 125869478 125869499 -16401945 + AT_rich Low_complexity Low_complexity 1 21 0 422 315 108 32 chr9 125869503 125869754 -16401690 - L2 LINE L2 -594 2720 2451 247 114 0 23 chr9 125870597 125870641 -16400803 - MER116 DNA Mariner 0 80 38 280 196 112 56 chr9 125870886 125870993 -16400451 - L1ME4a LINE L1 -37 6084 5972 1112 127 53 57 chr9 125871078 125871306 -16400138 - L1MA5A LINE L1 -4 6293 6067 237 248 149 0 chr9 125871665 125871790 -16399654 - MIR SINE MIR -46 162 14 415 215 116 8 chr9 125872731 125872852 -16398592 - MIR SINE MIR -29 233 100 233 341 12 0 chr9 125874078 125874160 -16397284 + CT-rich Low_complexity Low_complexity 1 83 0 396 0 0 0 chr9 125876169 125876213 -16395231 + (TG)n Simple_repeat Simple_repeat 2 45 0 41 21 0 0 chr9 125879254 125879302 -16392142 + AT_rich Low_complexity Low_complexity 1 48 0 266 288 61 55 chr9 125879455 125879618 -16391826 + MIR SINE MIR 78 241 -21 351 306 7 62 chr9 125879820 125879964 -16391480 + L2 LINE L2 3137 3272 0 21 0 0 0 chr9 125880091 125880112 -16391332 + AT_rich Low_complexity Low_complexity 1 21 0 311 265 44 0 chr9 125881389 125881457 -16389987 - MIR3 SINE MIR -24 184 114 512 250 178 10 chr9 125881632 125881840 -16389604 - MIR SINE MIR 0 262 20 628 263 65 5 chr9 125881849 125882035 -16389409 - MIR SINE MIR -56 206 10 4400 249 116 62 chr9 125882061 125884425 -16387019 + HAL1 LINE L1 1 2490 -17 2486 62 0 10 chr9 125884425 125884732 -16386712 - AluY SINE Alu -7 304 1 321 118 0 0 chr9 125885156 125885207 -16386237 + (TG)n Simple_repeat Simple_repeat 1 51 0 402 277 68 34 chr9 125886314 125886462 -16384982 + MIR SINE MIR 110 262 0 239 250 81 32 chr9 125886567 125886691 -16384753 - L1ME LINE L1 -5900 170 41 972 254 73 4 chr9 125886969 125887201 -16384243 + MIR SINE MIR 9 256 -6 361 270 161 15 chr9 125887386 125887523 -16383921 - MIR3 SINE MIR -5 203 47 2418 84 3 3 chr9 125888453 125888762 -16382682 - AluSq SINE Alu 0 313 5 207 0 0 0 chr9 125889818 125889841 -16381603 + (TTG)n Simple_repeat Simple_repeat 2 24 0 587 267 63 39 chr9 125890352 125890558 -16380886 - MIR SINE MIR -31 231 21 2424 90 3 0 chr9 125891744 125892076 -16379368 - AluSp SINE Alu 0 333 1 2059 103 0 47 chr9 125892272 125892634 -16378810 - AluY SINE Alu 0 348 1 21 36 0 0 chr9 125892645 125892673 -16378771 + AT_rich Low_complexity Low_complexity 1 28 0 418 261 196 0 chr9 125892727 125892865 -16378579 + MIR SINE MIR 16 180 -82 535 226 40 16 chr9 125892996 125893120 -16378324 - L2 LINE L2 0 3313 3187 2137 119 0 31 chr9 125893177 125893496 -16377948 + AluSx SINE Alu 1 309 -3 212 270 79 0 chr9 125894880 125894943 -16376501 + MIR SINE MIR 83 150 -58 2783 155 129 88 chr9 125894963 125895542 -16375902 - L1MC3 LINE L1 -8 7777 7097 282 215 0 15 chr9 125895542 125895607 -16375837 - MLT1F1 LTR MaLR -459 108 45 2783 155 129 88 chr9 125895607 125895725 -16375719 - L1MC3 LINE L1 -688 7097 6985 929 177 25 13 chr9 125895744 125895902 -16375542 - AluJb SINE Alu -35 277 118 802 169 0 0 chr9 125895937 125896061 -16375383 - AluJb SINE Alu -188 124 1 2371 92 0 3 chr9 125896066 125896380 -16375064 - AluSq SINE Alu 0 313 1 1623 137 81 75 chr9 125896380 125896738 -16374706 - L1MC3 LINE L1 -790 6995 6636 239 139 0 0 chr9 125896929 125896965 -16374479 + L1ME LINE L1 5547 5582 -539 7404 63 11 9 chr9 125897011 125898624 -16372820 - SVA Other Other -723 1384 2 1924 167 27 43 chr9 125899753 125899809 -16371635 + MLT1A1 LTR MaLR 1 56 -309 2402 70 0 10 chr9 125899809 125900123 -16371321 + AluY SINE Alu 1 311 0 1924 167 27 43 chr9 125900123 125900437 -16371007 + MLT1A1 LTR MaLR 56 365 0 349 258 63 31 chr9 125900669 125900687 -16370757 - L1MA10 LINE L1 -9 6325 6308 752 213 64 16 chr9 125900687 125900875 -16370569 - L1ME2 LINE L1 -15 6149 5953 1193 188 262 5 chr9 125900876 125901243 -16370201 - L1ME2 LINE L1 -282 5882 5422 1769 158 14 4 chr9 125901671 125901950 -16369494 - AluJb SINE Alu -29 283 2 808 195 82 0 chr9 125901953 125902112 -16369332 + MER58A DNA MER1_type 44 215 -9 234 0 0 0 chr9 125902218 125902244 -16369200 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 2036 107 11 0 chr9 125902525 125902797 -16368647 + AluSp SINE Alu 1 275 -38 1905 137 7 10 chr9 125903332 125903625 -16367819 - AluSx SINE Alu -20 292 1 1675 207 87 23 chr9 125903858 125904434 -16367010 - L1ME LINE L1 -426 5740 5134 251 202 11 0 chr9 125904563 125904657 -16366787 + CT-rich Low_complexity Low_complexity 1 95 0 322 265 103 59 chr9 125907374 125907578 -16363866 - L1MC5 LINE L1 -44 7917 7705 400 321 38 0 chr9 125908153 125908284 -16363160 + L2 LINE L2 3136 3271 -1 2236 128 3 0 chr9 125908604 125908910 -16362534 + AluSx SINE Alu 1 307 -5 933 113 0 15 chr9 125909994 125910127 -16361317 + FLAM_C SINE Alu 1 131 -2 1810 166 0 10 chr9 125910136 125910437 -16361007 + AluJo SINE Alu 1 298 -14 202 290 75 9 chr9 125910504 125910611 -16360833 - L2 LINE L2 -223 3049 2936 746 262 102 35 chr9 125911535 125911986 -16359458 - L1MC4 LINE L1 -117 7925 7445 214 256 163 12 chr9 125911986 125912072 -16359372 - L2 LINE L2 -11 3261 3163 1300 117 98 0 chr9 125912580 125912794 -16358650 - MER46A DNA MER2_type -1 235 1 287 200 73 45 chr9 125915184 125915294 -16356150 - MLT1J LTR MaLR 0 511 399 716 226 153 32 chr9 125915344 125915592 -16355852 - MLT1J LTR MaLR -231 280 3 36 53 0 0 chr9 125915633 125915690 -16355754 + AT_rich Low_complexity Low_complexity 1 57 0 350 294 9 0 chr9 125916058 125916167 -16355277 - L1ME LINE L1 -302 5819 5710 41 78 0 0 chr9 125917362 125917452 -16353992 + AT_rich Low_complexity Low_complexity 1 90 0 218 267 100 33 chr9 125917542 125917662 -16353782 - MIR SINE MIR -79 183 56 1871 144 65 7 chr9 125917698 125917990 -16353454 - AluJb SINE Alu -3 309 1 612 0 0 0 chr9 125918149 125918217 -16353227 + (TATTG)n Simple_repeat Simple_repeat 2 69 0 622 110 0 22 chr9 125918232 125918323 -16353121 - AluJb SINE Alu -23 289 201 296 339 128 25 chr9 125918365 125918725 -16352719 + L1MEd LINE L1 4 400 -5719 227 268 24 24 chr9 125918918 125919000 -16352444 + MIR SINE MIR 176 257 -5 500 237 194 4 chr9 125919188 125919420 -16352024 + L2 LINE L2 2365 2640 -674 2175 129 6 3 chr9 125919693 125920056 -16351388 - AluSx SINE Alu 0 364 1 386 289 178 16 chr9 125920141 125920502 -16350942 + L2 LINE L2 2830 3313 0 497 103 15 0 chr9 125921380 125921448 -16349996 + Tigger2 DNA MER2_type 1 69 -2649 * 2543 144 48 11 chr9 125921432 125921868 -16349576 + Tigger2 DNA MER2_type 2267 2718 0 1717 157 3 21 chr9 125921969 125922255 -16349189 - AluJb SINE Alu -26 286 6 217 191 56 101 chr9 125922370 125922459 -16348985 - MIR SINE MIR -102 106 22 262 296 61 0 chr9 125923440 125923538 -16347906 + L2 LINE L2 3164 3267 -46 357 308 112 12 chr9 125923553 125923722 -16347722 - MIR SINE MIR -76 186 1 185 282 59 24 chr9 125924208 125924293 -16347151 + MIR SINE MIR 15 102 -160 646 243 53 49 chr9 125925223 125925466 -16345978 - MIR SINE MIR 0 262 19 243 314 48 19 chr9 125926446 125926551 -16344893 - L2 LINE L2 -1 3312 3205 231 222 0 37 chr9 125927208 125927262 -16344182 + GA-rich Low_complexity Low_complexity 4 55 0 288 204 159 0 chr9 125927474 125927562 -16343882 - L1ME4a LINE L1 -2 6119 6018 243 299 15 0 chr9 125928395 125928462 -16342982 + MIR3 SINE MIR 109 176 -32 1726 164 7 29 chr9 125928558 125928868 -16342576 - AluJo SINE Alu -9 303 1 1213 150 39 10 chr9 125929010 125929217 -16342227 + AluJo SINE Alu 85 297 -15 621 241 114 34 chr9 125929741 125929978 -16341466 + MIR SINE MIR 7 262 0 987 203 92 14 chr9 125931492 125931699 -16339745 - MER58A DNA MER1_type 0 224 2 789 226 77 25 chr9 125933182 125933417 -16338027 - MIR SINE MIR -1 261 15 2510 283 154 10 chr9 125934091 125935574 -16335870 - L1 LINE L1 -1253 4893 3197 1176 151 126 0 chr9 125935574 125935773 -16335671 + AluJb SINE Alu 87 310 -2 1600 233 125 37 chr9 125935775 125935940 -16335504 - L1 LINE L1 -2943 3203 3054 1787 181 3 20 chr9 125935940 125936244 -16335200 + AluJo SINE Alu 1 299 -13 1600 233 125 37 chr9 125936244 125936756 -16334688 - L1 LINE L1 -3092 3054 2466 322 109 0 0 chr9 125936788 125936834 -16334610 + L1M4 LINE L1 2373 2418 -3728 449 166 25 123 chr9 125936844 125937007 -16334437 + L1M4 LINE L1 2272 2418 -3728 2166 116 0 10 chr9 125937090 125937391 -16334053 - AluSg SINE Alu -12 298 1 317 291 66 18 chr9 125937872 125938075 -16333369 - MIR SINE MIR 0 262 3 246 263 88 26 chr9 125938126 125938240 -16333204 + MIR3 SINE MIR 85 205 -3 371 273 200 0 chr9 125939420 125939585 -16331859 + MIR SINE MIR 47 244 -18 691 135 48 16 chr9 125940513 125940639 -16330805 - FLAM_A SINE Alu -2 131 2 369 0 0 0 chr9 125940905 125940946 -16330498 + (TG)n Simple_repeat Simple_repeat 2 42 0 2015 111 7 0 chr9 125940946 125941226 -16330218 - AluSg SINE Alu -28 282 1 736 269 128 29 chr9 125941252 125941412 -16330032 - L1ME4a LINE L1 -1 6120 5977 570 184 92 12 chr9 125941412 125941575 -16329869 + MER104 DNA MER2_type 5 180 0 736 269 128 29 chr9 125941575 125941938 -16329506 - L1ME4a LINE L1 -144 5977 5545 487 309 56 0 chr9 125942533 125942711 -16328733 + MIR SINE MIR 53 240 -22 186 263 18 0 chr9 125942924 125942981 -16328463 - L2 LINE L2 -14 3258 3201 402 21 0 0 chr9 125944090 125944137 -16327307 + (TA)n Simple_repeat Simple_repeat 2 48 0 279 54 0 0 chr9 125944457 125944494 -16326950 + (TG)n Simple_repeat Simple_repeat 2 38 0 571 106 26 40 chr9 125946132 125946283 -16325161 + (TAGA)n Simple_repeat Simple_repeat 3 151 0 981 47 78 0 chr9 125946987 125947116 -16324328 + MER85 DNA T2_type 1 139 0 848 181 65 47 chr9 125947384 125947599 -16323845 - MER20 DNA MER1_type 0 219 1 180 0 0 0 chr9 125949313 125949333 -16322111 + (CAG)n Simple_repeat Simple_repeat 3 22 0 960 203 141 0 chr9 125954298 125954490 -16316954 + MER58A DNA MER1_type 1 219 -5 231 272 207 42 chr9 125956185 125956494 -16314950 - L3 LINE CR1 -32 1545 1186 314 277 60 0 chr9 125957282 125957365 -16314079 + MIR SINE MIR 64 151 -57 366 268 0 0 chr9 125960215 125960297 -16311147 - MIR SINE MIR 0 262 181 183 139 0 0 chr9 125960974 125961010 -16310434 + (CGGGGG)n Simple_repeat Simple_repeat 6 41 0 216 200 0 0 chr9 125962101 125962146 -16309298 + T-rich Low_complexity Low_complexity 1 45 0 198 0 0 0 chr9 125962443 125962465 -16308979 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr9 125962925 125962947 -16308497 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 125964016 125964037 -16307407 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 125965208 125965230 -16306214 + AT_rich Low_complexity Low_complexity 1 22 0 248 365 119 23 chr9 125968948 125969167 -16302277 + L2 LINE L2 3033 3272 0 1949 134 3 3 chr9 125969563 125969847 -16301597 + AluJo SINE Alu 1 284 -28 202 311 39 39 chr9 125970000 125970103 -16301341 + L2 LINE L2 2954 3056 -216 302 281 152 53 chr9 125970594 125970765 -16300679 + MIR SINE MIR 48 235 -27 769 224 25 0 chr9 125971456 125971652 -16299792 - L1MA4 LINE L1 -4 6296 6096 484 310 54 68 chr9 125971653 125972252 -16299192 + L2 LINE L2 2623 3193 -79 404 330 70 57 chr9 125972630 125972790 -16298654 + MIR SINE MIR 20 185 -77 207 0 0 0 chr9 125972790 125972813 -16298631 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 404 330 70 57 chr9 125972813 125972882 -16298562 + MIR SINE MIR 185 252 -10 204 234 84 93 chr9 125973545 125973652 -16297792 + MIR SINE MIR 79 184 -78 182 375 89 0 chr9 125973882 125973994 -16297450 + MIR SINE MIR 16 137 -71 2320 92 3 13 chr9 125974025 125974330 -16297114 - AluSx SINE Alu -10 302 1 378 268 81 57 chr9 125975562 125975685 -16295759 + MIR SINE MIR 25 145 -63 242 235 12 82 chr9 125975951 125976036 -16295408 - L3 LINE CR1 -1091 486 408 234 105 0 0 chr9 125976293 125976331 -16295113 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 235 218 55 0 chr9 125977535 125977590 -16293854 - L2 LINE L2 -81 3191 3134 2129 126 7 0 chr9 125977887 125978196 -16293248 - AluSx SINE Alu -1 311 1 287 237 39 51 chr9 125979852 125980008 -16291436 + L1ME4a LINE L1 5967 6120 -1 233 339 0 0 chr9 125980581 125980643 -16290801 + MIR3 SINE MIR 109 170 -38 2128 111 4 0 chr9 125980801 125981122 -16290322 + AluSx SINE Alu 1 322 0 25 31 0 0 chr9 125981911 125981943 -16289501 + AT_rich Low_complexity Low_complexity 1 32 0 1548 165 41 102 chr9 125982399 125982599 -16288845 + MER31B LTR ERV1 1 212 -331 2441 110 100 5 chr9 125982599 125982989 -16288455 + MSTA LTR MaLR 1 427 -1 1548 165 41 102 chr9 125982989 125983283 -16288161 + MER31B LTR ERV1 212 543 0 251 256 24 0 chr9 125984157 125984239 -16287205 + L1ME4a LINE L1 5602 5685 -436 2311 109 0 0 chr9 125984404 125984715 -16286729 + AluSx SINE Alu 1 311 -1 886 253 74 7 chr9 125984759 125985055 -16286389 - MER46C DNA MER2_type -1 337 22 300 309 24 0 chr9 125985065 125985149 -16286295 + L1ME4a LINE L1 5966 6051 -70 514 247 52 32 chr9 125986378 125986532 -16284912 + L2 LINE L2 3114 3270 -43 360 281 80 16 chr9 125986771 125987020 -16284424 + L1ME4a LINE L1 5655 5919 -202 25 75 0 0 chr9 125987224 125987277 -16284167 + AT_rich Low_complexity Low_complexity 1 53 0 1877 170 0 7 chr9 125987882 125988188 -16283256 + AluJb SINE Alu 1 304 -8 1568 169 98 0 chr9 125988618 125988944 -16282500 + MLT1A1 LTR MaLR 1 358 -7 21 0 0 0 chr9 125990175 125990196 -16281248 + AT_rich Low_complexity Low_complexity 1 21 0 384 262 29 10 chr9 125990197 125990300 -16281144 - MIR SINE MIR -22 240 136 640 307 235 20 chr9 125990330 125990721 -16280723 - L2 LINE L2 -11 3302 2828 946 193 0 6 chr9 125990909 125991080 -16280364 + FAM SINE Alu 1 170 -5 378 403 63 0 chr9 125991409 125991647 -16279797 + L1MEd LINE L1 561 813 -5306 1896 258 99 14 chr9 125991711 125992809 -16278635 + L1M4 LINE L1 2476 3667 -2479 21 0 0 0 chr9 125992875 125992896 -16278548 + AT_rich Low_complexity Low_complexity 1 21 0 1933 203 32 8 chr9 125992908 125993508 -16277936 + L1MD2 LINE L1 5686 6346 -13 2138 259 63 19 chr9 125993540 125993680 -16277764 - L2 LINE L2 -628 2686 2554 2333 94 7 0 chr9 125993680 125993977 -16277467 - AluSx SINE Alu -13 299 1 2138 259 63 19 chr9 125993977 125994484 -16276960 - L2 LINE L2 -760 2554 2010 433 196 0 51 chr9 125994484 125994599 -16276845 + L1ME3A LINE L1 5461 5568 -596 516 252 120 4 chr9 125994623 125994865 -16276579 + L1ME3A LINE L1 5677 5946 -224 230 319 81 16 chr9 125994934 125995119 -16276325 + L1ME3A LINE L1 5965 6161 -9 2702 286 109 24 chr9 125995127 125996408 -16275036 - L2 LINE L2 -1319 1995 606 316 317 79 0 chr9 125996417 125996518 -16274926 - MIR SINE MIR -137 125 17 476 173 39 8 chr9 125996922 125997049 -16274395 - Charlie1 DNA MER1_type -4 2757 2627 * 618 159 51 97 chr9 125997043 125997238 -16274206 - Charlie1 DNA MER1_type -2526 235 50 331 294 37 18 chr9 125997550 125997659 -16273785 - MIR3 SINE MIR -93 115 5 2472 110 33 6 chr9 125998001 125998366 -16273078 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr9 126002157 126002186 -16269258 + AT_rich Low_complexity Low_complexity 1 29 0 1850 163 24 0 chr9 126002711 126003005 -16268439 - AluJb SINE Alu -11 301 1 2238 108 3 3 chr9 126004528 126004834 -16266610 - AluSx SINE Alu -6 306 1 2403 84 0 0 chr9 126005488 126005787 -16265657 + AluSc SINE Alu 1 299 -10 233 227 216 41 chr9 126006288 126006385 -16265059 + MIR SINE MIR 124 237 -25 365 275 228 12 chr9 126006797 126006964 -16264480 - MIR SINE MIR -7 255 53 1774 133 40 4 chr9 126006967 126007239 -16264205 + AluSx SINE Alu 1 283 -24 277 30 0 0 chr9 126007239 126007272 -16264172 + (CAA)n Simple_repeat Simple_repeat 1 180 0 2107 123 7 7 chr9 126009648 126009949 -16261495 - AluSx SINE Alu -11 301 1 249 108 0 0 chr9 126010344 126010381 -16261063 + (TA)n Simple_repeat Simple_repeat 1 37 0 26 50 0 0 chr9 126011264 126011304 -16260140 + AT_rich Low_complexity Low_complexity 1 40 0 342 324 155 28 chr9 126012165 126012455 -16258989 - L3 LINE CR1 -187 1390 1064 1809 183 0 7 chr9 126014634 126014934 -16256510 + AluJb SINE Alu 1 298 -14 244 214 71 0 chr9 126015055 126015125 -16256319 + MIR3 SINE MIR 120 194 -14 237 336 55 18 chr9 126015574 126015684 -16255760 - MIR SINE MIR -56 152 39 194 188 83 21 chr9 126015961 126016009 -16255435 + L2 LINE L2 3262 3312 -1 198 303 114 48 chr9 126016102 126016330 -16255114 + L2 LINE L2 2456 2698 -616 671 213 124 40 chr9 126016433 126016635 -16254809 + MIR SINE MIR 44 262 0 233 347 0 31 chr9 126016848 126016946 -16254498 + MIR SINE MIR 8 102 -160 180 280 0 20 chr9 126017081 126017131 -16254313 + MIR SINE MIR 214 262 0 1673 174 19 29 chr9 126017765 126018075 -16253369 + AluJo SINE Alu 1 307 -5 337 129 29 0 chr9 126018225 126018295 -16253149 + L1MB4 LINE L1 6109 6180 0 205 302 116 12 chr9 126018965 126019051 -16252393 - L2 LINE L2 -1 3271 3177 1528 121 128 8 chr9 126019974 126020247 -16251197 + AluSg1 SINE Alu 1 303 0 1654 166 4 11 chr9 126020451 126020729 -16250715 + AluJo SINE Alu 1 276 -36 2383 92 3 13 chr9 126021995 126022311 -16249133 + AluSp SINE Alu 1 313 0 2190 109 13 19 chr9 126022407 126022719 -16248725 + AluSx SINE Alu 3 312 0 1882 148 0 19 chr9 126023197 126023515 -16247929 + AluJo SINE Alu 1 312 0 2163 107 10 7 chr9 126023627 126023925 -16247519 + AluSx SINE Alu 1 299 -13 770 176 0 0 chr9 126025756 126025881 -16245563 + FLAM_C SINE Alu 1 125 -18 1553 74 0 74 chr9 126026280 126026523 -16244921 + AluY SINE Alu 77 301 -10 1821 140 0 24 chr9 126026532 126026825 -16244619 + AluJb SINE Alu 1 286 -26 24 0 0 0 chr9 126027291 126027315 -16244129 + AT_rich Low_complexity Low_complexity 1 24 0 246 235 26 148 chr9 126027353 126027468 -16243976 + MIR SINE MIR 53 153 -109 470 303 128 5 chr9 126027480 126027675 -16243769 - MIR SINE MIR -2 260 42 21 0 0 0 chr9 126027735 126027756 -16243688 + AT_rich Low_complexity Low_complexity 1 21 0 242 296 174 23 chr9 126027805 126027937 -16243507 + MIR SINE MIR 99 250 -12 3519 115 28 63 chr9 126028133 126028783 -16242661 - L1MC2 LINE L1 -9 6335 5709 2264 93 0 7 chr9 126028829 126029129 -16242315 + AluY SINE Alu 1 298 -13 3709 27 0 5 chr9 126029504 126029945 -16241499 + L1PA4 LINE L1 5717 6155 0 3103 52 0 3 chr9 126029946 126030332 -16241112 + L1PA6 LINE L1 5770 6154 0 2270 124 0 0 chr9 126030469 126030775 -16240669 + AluSx SINE Alu 1 306 -6 1679 236 192 49 chr9 126031412 126031935 -16239509 - L2 LINE L2 0 3313 2866 1627 180 56 0 chr9 126031935 126032257 -16239187 - MER58B DNA MER1_type 0 341 2 1679 236 192 49 chr9 126032257 126032902 -16238542 - L2 LINE L2 -447 2866 1988 347 226 150 38 chr9 126032932 126033065 -16238379 + FRAM SINE Alu 1 148 -18 248 277 15 0 chr9 126033681 126033746 -16237698 + L2 LINE L2 3234 3299 -14 3639 246 78 88 chr9 126033954 126035595 -16235849 + L2 LINE L2 743 2366 -948 216 0 0 0 chr9 126035595 126035619 -16235825 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3639 246 78 88 chr9 126035619 126035807 -16235637 + L2 LINE L2 2366 2554 -760 6526 145 9 21 chr9 126035808 126037822 -16233622 + L1MA3 LINE L1 4125 6112 -193 1542 174 45 13 chr9 126037822 126038132 -16233312 - L1PB3 LINE L1 0 6154 5835 2274 109 3 0 chr9 126038136 126038447 -16232997 - AluSx SINE Alu 0 312 1 12830 204 40 42 chr9 126038448 126038612 -16232832 - L1PB3 LINE L1 -670 5484 5321 1883 144 20 10 chr9 126038612 126038911 -16232533 - AluSx SINE Alu -10 302 1 12830 204 40 42 chr9 126038911 126039427 -16232017 - L1PB3 LINE L1 -833 5321 4805 2150 86 32 0 chr9 126039427 126039707 -16231737 - AluSc SINE Alu -20 289 1 12830 204 40 42 chr9 126039707 126041034 -16230410 - L1PB3 LINE L1 -1349 4805 3477 2108 82 3 76 chr9 126041034 126041364 -16230080 - AluY SINE Alu -5 306 1 12830 204 40 42 chr9 126041364 126043134 -16228310 - L1PB3 LINE L1 -2677 3477 1705 1116 144 10 0 chr9 126043134 126043329 -16228115 + L1MA3 LINE L1 6102 6298 -7 32 26 0 0 chr9 126043333 126043372 -16228072 + AT_rich Low_complexity Low_complexity 1 39 0 1107 235 111 50 chr9 126043372 126043557 -16227887 + L2 LINE L2 2541 2713 -559 1799 176 27 0 chr9 126043557 126043852 -16227592 + AluJo SINE Alu 3 305 -7 1107 235 111 50 chr9 126043852 126044173 -16227271 + L2 LINE L2 2713 3123 -149 2192 100 0 0 chr9 126044173 126044498 -16226946 + AluSx SINE Alu 1 325 0 1107 235 111 50 chr9 126044498 126044618 -16226826 + L2 LINE L2 3123 3234 -38 275 351 0 0 chr9 126044752 126044826 -16226618 - MIR SINE MIR -92 116 43 2328 101 0 22 chr9 126045120 126045437 -16226007 + AluY SINE Alu 2 311 0 2270 97 3 7 chr9 126045465 126045763 -16225681 + AluSq SINE Alu 1 297 -16 332 354 50 33 chr9 126046498 126046679 -16224765 + MIR3 SINE MIR 23 206 -2 504 198 114 91 chr9 126046792 126047100 -16224344 + L1MC5 LINE L1 7603 7917 -44 2344 93 6 0 chr9 126047110 126047421 -16224023 - AluSp SINE Alu 0 313 1 324 259 62 79 chr9 126047558 126047806 -16223638 + L1MC/D LINE L1 5537 5778 -386 1182 49 6 24 chr9 126048068 126048232 -16223212 + L1PA7 LINE L1 5993 6153 -1 697 230 7 26 chr9 126048958 126049110 -16222334 - MER58B DNA MER1_type 0 341 193 385 326 115 20 chr9 126049353 126049657 -16221787 - L1MEc LINE L1 -6008 388 56 207 222 67 67 chr9 126049882 126049972 -16221472 + MIR SINE MIR 133 222 -40 24 32 0 0 chr9 126050256 126050287 -16221157 + AT_rich Low_complexity Low_complexity 1 31 0 351 256 133 0 chr9 126050707 126050887 -16220557 + L1ME3A LINE L1 5079 5282 -864 571 263 141 28 chr9 126050929 126051034 -16220410 + L1ME3A LINE L1 5294 5386 -783 2206 89 14 7 chr9 126051034 126051325 -16220119 + AluSg SINE Alu 1 293 -17 571 263 141 28 chr9 126051325 126051817 -16219627 + L1ME3A LINE L1 5386 5905 -264 259 356 32 0 chr9 126053335 126053446 -16217998 - MIR SINE MIR -57 151 38 477 309 51 0 chr9 126053948 126054126 -16217318 - MIR SINE MIR -36 226 40 2204 104 13 0 chr9 126054127 126054425 -16217019 + AluSx SINE Alu 1 302 -10 3220 88 86 27 chr9 126054427 126054629 -16216815 + L1PB1 LINE L1 5598 5787 -364 351 0 0 0 chr9 126054629 126054668 -16216776 + (CA)n Simple_repeat Simple_repeat 2 40 0 3220 88 86 27 chr9 126054668 126054986 -16216458 + L1PB1 LINE L1 5787 6149 -2 21 36 0 0 chr9 126054986 126055014 -16216430 + AT_rich Low_complexity Low_complexity 1 28 0 213 157 59 0 chr9 126055111 126055162 -16216282 + L2 LINE L2 3015 3068 -204 1862 145 34 10 chr9 126055543 126055840 -16215604 - AluJo SINE Alu -8 304 1 2038 116 34 0 chr9 126055995 126056288 -16215156 + AluSq SINE Alu 1 303 -10 306 265 98 20 chr9 126056756 126056858 -16214586 + L2 LINE L2 3202 3311 -2 421 327 70 20 chr9 126057257 126057456 -16213988 - MIR SINE MIR -29 233 25 2887 6 0 0 chr9 126058839 126059152 -16212292 - AluYb8 SINE Alu -5 313 1 548 292 125 0 chr9 126059334 126059526 -16211918 - MIR SINE MIR 0 262 47 325 324 141 18 chr9 126060139 126060309 -16211135 + MIR SINE MIR 2 192 -70 486 261 38 17 chr9 126060391 126060629 -16210815 + L1MDa LINE L1 1854 2096 -4444 1575 166 89 21 chr9 126060686 126061011 -16210433 - MER7A DNA MER2_type 0 346 2 367 309 55 9 chr9 126061306 126061416 -16210028 - MIR SINE MIR -128 134 20 510 232 80 8 chr9 126061821 126061946 -16209498 + MIR3 SINE MIR 65 198 -10 463 216 134 29 chr9 126061977 126062148 -16209296 - L1MC4 LINE L1 -27 8015 7827 * 1954 241 72 45 chr9 126062143 126062985 -16208459 - L1MC4 LINE L1 -478 7564 6700 416 307 32 28 chr9 126063004 126063287 -16208157 + L1MDa LINE L1 3667 3950 -2590 1826 222 121 22 chr9 126063304 126063521 -16207923 + L1MC2 LINE L1 5606 5800 -544 500 0 17 0 chr9 126063521 126063581 -16207863 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1826 222 121 22 chr9 126063581 126064034 -16207410 + L1MC2 LINE L1 5800 6342 -2 230 248 101 62 chr9 126065003 126065132 -16206312 - L2 LINE L2 0 3313 3180 1299 239 151 29 chr9 126065218 126065800 -16205644 + L1ME3A LINE L1 5513 6165 -5 302 218 19 82 chr9 126065919 126066129 -16205315 + LTR67 LTR ERVL 1 289 -268 532 206 103 7 chr9 126066194 126066330 -16205114 + LTR67 LTR ERVL 408 556 -1 927 198 54 6 chr9 126066362 126066660 -16204784 + L1ME1 LINE L1 5566 5894 -272 696 204 105 11 chr9 126066673 126066864 -16204580 + L1ME1 LINE L1 5955 6163 -3 180 261 188 0 chr9 126066907 126066976 -16204468 - MIR SINE MIR -163 99 18 521 202 67 8 chr9 126067117 126067236 -16204208 - L2 LINE L2 0 3313 3188 981 208 130 7 chr9 126067286 126067635 -16203809 - MSTD LTR MaLR 0 396 1 5151 245 115 66 chr9 126067767 126068037 -16203407 - L2 LINE L2 -318 2995 2740 2277 108 23 0 chr9 126068037 126068342 -16203102 - AluSx SINE Alu 0 312 1 5151 245 115 66 chr9 126068342 126069212 -16202232 - L2 LINE L2 -573 2740 1914 3630 147 13 6 chr9 126069212 126069840 -16201604 + L1MB7 LINE L1 5538 6169 -15 5151 245 115 66 chr9 126069840 126070724 -16200720 - L2 LINE L2 -1399 1914 878 191 245 38 0 chr9 126070937 126070990 -16200454 + L2 LINE L2 3255 3309 -4 381 186 85 90 chr9 126071511 126071688 -16199756 + MER5B DNA MER1_type 1 176 -2 228 331 53 30 chr9 126071720 126071853 -16199591 + L2 LINE L2 2249 2384 -930 247 300 67 8 chr9 126071884 126072004 -16199440 - L1ME3A LINE L1 -15 6155 6029 193 328 112 60 chr9 126072317 126072513 -16198931 + L2 LINE L2 2809 3020 -252 2224 123 3 0 chr9 126072513 126072815 -16198629 + AluSx SINE Alu 1 303 -9 193 328 112 60 chr9 126072815 126072850 -16198594 + L2 LINE L2 3020 3052 -220 306 309 118 0 chr9 126073404 126073514 -16197930 + L2 LINE L2 3137 3259 -13 1613 181 7 20 chr9 126073557 126073860 -16197584 - AluJo SINE Alu -13 299 1 324 251 26 147 chr9 126073929 126074160 -16197284 + L1MC4 LINE L1 7839 8041 -1 2477 71 0 3 chr9 126074402 126074712 -16196732 + AluY SINE Alu 1 309 -2 372 345 51 23 chr9 126074884 126075061 -16196383 - MIR3 SINE MIR -7 201 20 1702 137 84 14 chr9 126075161 126075446 -16195998 + AluSx SINE Alu 1 305 -7 288 0 0 0 chr9 126076068 126076100 -16195344 + (A)n Simple_repeat Simple_repeat 1 32 0 203 184 0 0 chr9 126076776 126076814 -16194630 + T-rich Low_complexity Low_complexity 4 41 0 379 275 92 0 chr9 126077174 126077305 -16194139 + MIR SINE MIR 25 167 -95 2181 109 0 10 chr9 126077335 126077638 -16193806 + AluSx SINE Alu 1 300 -12 262 247 72 21 chr9 126077908 126078005 -16193439 + MLT1J LTR MaLR 95 196 -315 800 237 63 43 chr9 126078388 126078641 -16192803 + MIR SINE MIR 5 262 0 772 153 0 8 chr9 126078649 126078773 -16192671 + FLAM_C SINE Alu 1 123 -10 2469 67 0 0 chr9 126079577 126079875 -16191569 + AluY SINE Alu 1 298 -13 337 306 112 29 chr9 126080364 126080534 -16190910 - MIR SINE MIR -78 184 1 1574 283 137 20 chr9 126081120 126081381 -16190063 + L2 LINE L2 2056 2285 -1028 2329 103 3 0 chr9 126081381 126081683 -16189761 + AluSp SINE Alu 1 303 -10 1574 283 137 20 chr9 126081683 126081705 -16189739 + L2 LINE L2 2285 2303 -1010 1485 188 10 48 chr9 126081705 126082014 -16189430 + AluJo SINE Alu 3 299 -13 1574 283 137 20 chr9 126082014 126082840 -16188604 + L2 LINE L2 2303 3308 -5 2060 141 0 3 chr9 126082860 126083158 -16188286 + AluSx SINE Alu 1 297 -15 3827 186 79 58 chr9 126083371 126085117 -16186327 + L1MC2 LINE L1 4546 6338 -6 2476 164 19 8 chr9 126085120 126085601 -16185843 + L1MD1 LINE L1 5475 5960 -399 321 121 15 30 chr9 126085601 126085664 -16185780 + L1MD1 LINE L1 6168 6232 -10 565 218 56 106 chr9 126085745 126085859 -16185585 + MER5B DNA MER1_type 6 110 -68 2076 73 33 4 chr9 126085859 126086164 -16185280 - AluY SINE Alu 0 313 1 565 218 56 106 chr9 126086164 126086227 -16185217 + MER5B DNA MER1_type 110 175 -3 452 268 43 81 chr9 126087732 126087754 -16183690 + MIR SINE MIR 49 70 -192 2197 104 7 3 chr9 126087754 126088052 -16183392 - AluSq SINE Alu -14 299 1 452 268 43 81 chr9 126088052 126088238 -16183206 + MIR SINE MIR 70 249 -13 2311 101 0 13 chr9 126088745 126089053 -16182391 - AluSg SINE Alu -6 304 1 1766 134 21 25 chr9 126089591 126089875 -16181569 + AluJb SINE Alu 13 295 -17 1482 183 12 8 chr9 126089877 126090134 -16181310 + AluJo SINE Alu 35 292 -20 35 41 0 0 chr9 126090134 126090183 -16181261 + AT_rich Low_complexity Low_complexity 1 49 0 736 220 40 0 chr9 126090226 126090399 -16181045 + Charlie1b DNA MER1_type 3 182 -341 * 2777 140 126 21 chr9 126090398 126091027 -16180417 + Charlie1 DNA MER1_type 2067 2761 0 1339 171 34 75 chr9 126091319 126091612 -16179832 + AluJo SINE Alu 1 281 -31 339 178 30 10 chr9 126091613 126091714 -16179730 + CT-rich Low_complexity Low_complexity 4 106 0 225 94 0 0 chr9 126091716 126091748 -16179696 + (GAA)n Simple_repeat Simple_repeat 2 33 0 385 255 193 42 chr9 126091768 126091980 -16179464 - MIR SINE MIR -12 250 7 437 290 51 0 chr9 126091996 126092140 -16179304 + MIR3 SINE MIR 48 199 -9 271 280 320 17 chr9 126092758 126092933 -16178511 - MIR SINE MIR -18 244 17 333 299 140 19 chr9 126093975 126094132 -16177312 + MIR SINE MIR 12 187 -75 613 121 40 24 chr9 126094380 126094504 -16176940 + L1MB5 LINE L1 6012 6137 -37 1799 79 17 0 chr9 126094730 126094970 -16176474 + AluY SINE Alu 68 311 0 267 254 0 0 chr9 126094987 126095050 -16176394 + MIR SINE MIR 55 117 -91 1635 176 36 0 chr9 126096499 126096778 -16174666 - AluJo SINE Alu 0 312 24 3105 166 40 7 chr9 126096866 126097454 -16173990 - MER6A DNA MER2_type 0 605 -1 306 67 0 0 chr9 126097893 126097938 -16173506 + (CA)n Simple_repeat Simple_repeat 2 46 0 1652 175 7 14 chr9 126098016 126098307 -16173137 + AluJo SINE Alu 1 289 -23 263 243 37 0 chr9 126098317 126098424 -16173020 + (TA)n Simple_repeat Simple_repeat 1 111 0 3134 259 157 26 chr9 126098612 126099005 -16172439 - L2 LINE L2 -5 3308 2968 2453 60 10 3 chr9 126099005 126099306 -16172138 + AluY SINE Alu 1 303 -8 3134 259 157 26 chr9 126099306 126099908 -16171536 - L2 LINE L2 -345 2968 2446 2302 66 0 7 chr9 126099908 126100194 -16171250 + AluSp SINE Alu 1 284 -29 252 0 0 0 chr9 126100197 126100225 -16171219 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3134 259 157 26 chr9 126100225 126100689 -16170755 - L2 LINE L2 -868 2445 1611 453 255 92 26 chr9 126100871 126101024 -16170420 - MIR SINE MIR -28 234 72 508 255 65 57 chr9 126101071 126101334 -16170110 + L1MC5 LINE L1 7644 7908 -53 188 298 137 16 chr9 126101444 126101568 -16169876 - MIR SINE MIR -46 216 78 1718 139 0 30 chr9 126103763 126104030 -16167414 + AluJo SINE Alu 46 304 -8 2199 60 0 4 chr9 126104381 126104649 -16166795 + AluSc SINE Alu 1 267 -42 184 265 153 20 chr9 126105102 126105200 -16166244 - MIR SINE MIR -123 139 29 24 0 0 0 chr9 126105676 126105700 -16165744 + AT_rich Low_complexity Low_complexity 1 24 0 616 213 0 0 chr9 126107443 126107551 -16163893 - FLAM_C SINE Alu -33 110 3 2061 182 137 12 chr9 126107555 126108216 -16163228 - L1MC/D LINE L1 -743 5403 4749 229 227 149 58 chr9 126108246 126108370 -16163074 - MLT1L LTR MaLR -1 614 472 1205 196 0 18 chr9 126108370 126108595 -16162849 + MER58A DNA MER1_type 4 224 0 229 227 149 58 chr9 126108595 126108624 -16162820 - MLT1L LTR MaLR -143 472 447 606 157 139 0 chr9 126108656 126108764 -16162680 - FLAM_A SINE Alu -10 123 1 250 264 25 92 chr9 126108834 126108997 -16162447 - MLT1J LTR MaLR -249 262 111 318 343 114 7 chr9 126109131 126109271 -16162173 - MER5A DNA MER1_type 0 189 35 271 200 0 50 chr9 126109331 126109380 -16162064 + MER5B DNA MER1_type 1 51 -127 256 31 0 0 chr9 126109380 126109412 -16162032 + (TTG)n Simple_repeat Simple_repeat 2 180 0 1765 146 49 4 chr9 126109413 126109680 -16161764 - AluSx SINE Alu -32 280 2 897 237 28 0 chr9 126109850 126110027 -16161417 + MER5A DNA MER1_type 4 185 -4 2165 115 0 3 chr9 126110122 126110410 -16161034 + AluSq SINE Alu 1 287 -26 28 0 0 0 chr9 126110410 126110438 -16161006 + AT_rich Low_complexity Low_complexity 1 28 0 200 205 84 6 chr9 126110863 126111029 -16160415 + (TA)n Simple_repeat Simple_repeat 1 179 0 1935 162 0 7 chr9 126111355 126111658 -16159786 + AluSx SINE Alu 1 301 -11 1544 220 20 14 chr9 126111793 126112088 -16159356 + AluJb SINE Alu 2 298 -4 370 306 121 6 chr9 126112441 126112614 -16158830 - MIR3 SINE MIR -9 199 7 21 0 0 0 chr9 126112625 126112646 -16158798 + AT_rich Low_complexity Low_complexity 1 21 0 342 0 0 0 chr9 126112857 126112895 -16158549 + (TA)n Simple_repeat Simple_repeat 2 39 0 1314 196 100 0 chr9 126113000 126113280 -16158164 + MLT1A1 LTR MaLR 51 358 -7 244 167 104 73 chr9 126113283 126113379 -16158065 + L1ME4a LINE L1 5946 6044 -77 21 0 0 0 chr9 126114511 126114532 -16156912 + AT_rich Low_complexity Low_complexity 1 21 0 380 262 29 10 chr9 126114533 126114636 -16156808 - MIR SINE MIR -22 240 136 613 307 235 20 chr9 126114666 126115057 -16156387 - L2 LINE L2 -11 3302 2828 1016 193 0 6 chr9 126115245 126115416 -16156028 + FAM SINE Alu 1 170 -5 359 399 67 4 chr9 126115745 126115983 -16155461 + L1MD2 LINE L1 561 813 -5306 2350 258 99 14 chr9 126116047 126117145 -16154299 + L1MD2 LINE L1 2459 3650 -2479 2131 209 32 11 chr9 126117220 126117847 -16153597 + L1MD2 LINE L1 5652 6332 -10 508 256 25 8 chr9 126117876 126117997 -16153447 - L2 LINE L2 -628 2686 2564 2542 54 0 0 chr9 126118016 126118314 -16153130 - AluY SINE Alu -13 298 1 537 292 125 0 chr9 126118496 126118688 -16152756 - MIR SINE MIR 0 262 47 315 324 141 18 chr9 126119302 126119472 -16151972 + MIR SINE MIR 2 192 -70 571 263 41 18 chr9 126119537 126119792 -16151652 + L1MDa LINE L1 1854 2378 -4162 1729 166 89 21 chr9 126119849 126120174 -16151270 - MER7A DNA MER2_type 0 346 2 361 309 55 9 chr9 126120469 126120579 -16150865 - MIR SINE MIR -128 134 20 504 232 80 8 chr9 126120984 126121109 -16150335 + MIR3 SINE MIR 65 198 -10 538 212 139 30 chr9 126121140 126121305 -16150139 - L1MC4 LINE L1 -27 8015 7833 2314 240 71 45 chr9 126121306 126122149 -16149295 - L1MC4 LINE L1 -478 7564 6700 539 305 38 27 chr9 126122168 126122460 -16148984 + L1MDa LINE L1 3667 3961 -2579 2088 224 121 22 chr9 126122468 126122685 -16148759 + L1MC2 LINE L1 5606 5800 -544 500 0 17 0 chr9 126122685 126122745 -16148699 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2088 224 121 22 chr9 126122745 126123198 -16148246 + L1MC2 LINE L1 5800 6342 -2 226 248 101 62 chr9 126124167 126124296 -16147148 - L2 LINE L2 0 3313 3180 1532 239 151 29 chr9 126124382 126124964 -16146480 + L1ME3A LINE L1 5513 6165 -5 349 229 22 83 chr9 126125083 126125292 -16146152 + LTR67 LTR ERVL 1 289 -268 587 206 103 7 chr9 126125357 126125493 -16145951 + LTR67 LTR ERVL 408 556 -1 1057 213 56 9 chr9 126125525 126125834 -16145610 + L1ME1 LINE L1 5566 5908 -256 775 204 105 11 chr9 126125836 126126027 -16145417 + L1ME1 LINE L1 5955 6163 -3 518 202 67 8 chr9 126126280 126126399 -16145045 - L2 LINE L2 0 3313 3188 1057 199 132 9 chr9 126126449 126126798 -16144646 - MSTD LTR MaLR 0 396 1 1615 242 96 51 chr9 126126930 126127200 -16144244 - L2 LINE L2 -318 2995 2739 2267 108 23 0 chr9 126127200 126127505 -16143939 - AluSx SINE Alu 0 312 1 1615 242 96 51 chr9 126127505 126127814 -16143630 - L2 LINE L2 -574 2739 2398 26 0 0 0 chr9 126127921 126127947 -16143497 + GC_rich Low_complexity Low_complexity 1 26 0 493 296 96 10 chr9 126128421 126128620 -16142824 + MIR SINE MIR 38 253 -9 196 351 72 9 chr9 126128839 126128950 -16142494 - L2 LINE L2 -27 3245 3128 216 258 81 0 chr9 126129473 126129535 -16141909 + L2 LINE L2 3111 3177 -95 523 303 81 0 chr9 126129639 126129824 -16141620 + MIR SINE MIR 35 234 -28 21 0 0 0 chr9 126129827 126129848 -16141596 + AT_rich Low_complexity Low_complexity 1 21 0 2184 109 0 3 chr9 126129973 126130266 -16141178 + AluSq SINE Alu 1 292 -21 2186 120 7 0 chr9 126130556 126130857 -16140587 - AluSx SINE Alu -9 303 1 1836 99 57 11 chr9 126130859 126131121 -16140323 - AluSx SINE Alu -21 291 18 558 209 44 114 chr9 126131135 126131272 -16140172 - L1MB8 LINE L1 -1 6177 6067 1971 112 51 0 chr9 126131272 126131548 -16139896 + AluSc SINE Alu 2 291 -18 558 209 44 114 chr9 126131548 126131683 -16139761 - L1MB8 LINE L1 -111 6067 5924 1761 153 10 14 chr9 126131684 126131978 -16139466 - AluJb SINE Alu -19 293 1 2091 109 0 3 chr9 126132010 126132332 -16139112 + AluSx SINE Alu 1 321 0 1801 173 23 3 chr9 126132344 126132650 -16138794 + AluSx SINE Alu 1 312 0 2462 92 0 3 chr9 126132683 126132997 -16138447 + AluSq SINE Alu 1 313 0 230 216 166 87 chr9 126133062 126133303 -16138141 - L1ME4a LINE L1 -151 5970 5711 220 267 198 0 chr9 126133389 126133475 -16137969 - L2 LINE L2 0 3313 3211 261 0 0 0 chr9 126133561 126133590 -16137854 + (TA)n Simple_repeat Simple_repeat 2 30 0 4648 25 0 8 chr9 126133590 126134109 -16137335 - L1PA5 LINE L1 -1 6153 5639 2582 71 0 3 chr9 126134143 126134453 -16136991 + AluSq SINE Alu 1 309 -4 1081 189 45 5 chr9 126134497 126134698 -16136746 - MER3 DNA MER1_type 0 209 1 371 314 101 23 chr9 126134925 126135183 -16136261 + L2 LINE L2 1432 1709 -1605 1236 239 127 5 chr9 126135274 126135533 -16135911 - MER20B DNA MER1_type -335 448 129 2426 87 0 0 chr9 126135533 126135832 -16135612 + AluSx SINE Alu 1 299 -13 1236 239 127 5 chr9 126135832 126135941 -16135503 - MER20B DNA MER1_type -654 129 35 206 217 155 62 chr9 126135955 126136084 -16135360 + L2 LINE L2 2271 2411 -903 298 302 60 9 chr9 126136105 126136221 -16135223 + L2 LINE L2 3188 3309 -4 2342 99 0 6 chr9 126136520 126136834 -16134610 + AluSx SINE Alu 1 312 0 959 229 14 0 chr9 126137072 126137282 -16134162 - MIR SINE MIR -2 260 48 961 158 118 49 chr9 126137700 126137903 -16133541 + MER20 DNA MER1_type 1 217 -2 758 167 19 62 chr9 126138267 126138393 -16133051 + MSTC LTR MaLR 1 120 -308 2483 105 51 20 chr9 126138393 126138746 -16132698 + THE1B LTR MaLR 1 364 0 758 167 19 62 chr9 126138746 126138781 -16132663 + MSTC LTR MaLR 120 155 -273 1347 140 26 18 chr9 126138961 126139225 -16132219 + MSTC LTR MaLR 136 428 0 802 307 68 21 chr9 126139249 126139793 -16131651 + L1MC4 LINE L1 6414 7067 -826 2308 101 0 3 chr9 126139847 126140153 -16131291 - AluSc SINE Alu -4 305 1 2299 108 0 6 chr9 126140710 126141024 -16130420 + AluSq SINE Alu 1 312 -1 237 225 56 42 chr9 126141093 126141164 -16130280 + L1MC5 LINE L1 7029 7100 -861 415 282 24 8 chr9 126141220 126141344 -16130100 - MLT1H LTR MaLR -325 224 99 640 302 48 57 chr9 126142043 126142397 -16129047 + L2 LINE L2 2912 3262 -10 1890 242 189 30 chr9 126142492 126143385 -16128059 + L2 LINE L2 1433 2467 -847 430 89 0 0 chr9 126143387 126143443 -16128001 - Alu SINE Alu -11 298 243 1060 153 85 11 chr9 126143443 126143632 -16127812 + AluJo SINE Alu 85 287 -25 2164 100 0 42 chr9 126143641 126143952 -16127492 + AluSx SINE Alu 1 298 -14 2293 86 0 14 chr9 126143955 126144293 -16127151 + AluSg SINE Alu 1 334 0 380 225 257 36 chr9 126144297 126144577 -16126867 + MLT1H LTR MaLR 208 549 0 2582 55 0 0 chr9 126144722 126145032 -16126412 + AluY SINE Alu 1 310 -1 440 155 0 0 chr9 126145063 126145134 -16126310 - AluJ/FRAM SINE Alu -9 303 233 708 152 0 9 chr9 126145151 126145256 -16126188 - FLAM_A SINE Alu -18 124 21 707 240 0 7 chr9 126145405 126145551 -16125893 - MER5B DNA MER1_type -32 146 2 488 237 172 35 chr9 126146039 126146208 -16125236 - MIR SINE MIR -9 253 62 2205 110 3 7 chr9 126146382 126146683 -16124761 + AluSc SINE Alu 1 300 -9 181 220 51 51 chr9 126146734 126146793 -16124651 - MIR SINE MIR -39 223 165 374 283 126 48 chr9 126147053 126147283 -16124161 - MIR SINE MIR -2 260 13 252 289 23 31 chr9 126147337 126147465 -16123979 + LTR67 LTR ERVL 428 554 -3 210 191 0 0 chr9 126147542 126147584 -16123860 + (TAA)n Simple_repeat Simple_repeat 1 42 0 334 280 0 0 chr9 126147609 126147702 -16123742 - MIR SINE MIR -10 252 160 1993 137 0 57 chr9 126147713 126147876 -16123568 - L1MB7 LINE L1 -19 6165 6031 2336 54 0 54 chr9 126147876 126148190 -16123254 + AluY SINE Alu 1 297 -14 1993 137 0 57 chr9 126148190 126148377 -16123067 - L1MB7 LINE L1 -153 6031 5835 2375 101 0 19 chr9 126148388 126148706 -16122738 - AluSx SINE Alu 0 312 1 3247 189 13 40 chr9 126148712 126148955 -16122489 - L1MB4 LINE L1 0 6180 5932 2348 115 3 0 chr9 126148955 126149267 -16122177 - AluSq SINE Alu 0 313 1 3247 189 13 40 chr9 126149267 126149700 -16121744 - L1MB4 LINE L1 -248 5932 5522 2216 108 0 3 chr9 126149702 126149999 -16121445 - AluSx SINE Alu -16 296 1 1269 174 0 5 chr9 126149999 126150200 -16121244 - AluSx SINE Alu -112 200 1 394 183 106 67 chr9 126150201 126150305 -16121139 - L1MB4 LINE L1 -647 5533 5426 1372 159 4 32 chr9 126150308 126150560 -16120884 - L1MB7 LINE L1 -356 5828 5584 367 261 52 60 chr9 126150560 126150653 -16120791 - MIR SINE MIR -99 163 70 2517 78 0 0 chr9 126150653 126150961 -16120483 + AluY SINE Alu 1 308 -3 367 261 52 60 chr9 126150961 126151001 -16120443 - MIR SINE MIR -192 70 31 449 252 175 18 chr9 126151242 126151407 -16120037 + MIR SINE MIR 16 199 -63 260 265 15 31 chr9 126151427 126151525 -16119919 - MIR SINE MIR -55 153 88 394 323 153 5 chr9 126151852 126152041 -16119403 + MIR SINE MIR 41 257 -5 228 305 25 8 chr9 126152274 126152392 -16119052 + (CA)n Simple_repeat Simple_repeat 1 120 0 5619 20 0 0 chr9 126152778 126153383 -16118061 + L1PA3 LINE L1 5551 6155 0 449 203 85 17 chr9 126153561 126153679 -16117765 - MIR SINE MIR -21 241 116 963 83 0 0 chr9 126153798 126153919 -16117525 + AluSg/x SINE Alu 182 302 -10 1980 151 0 16 chr9 126153933 126154250 -16117194 - AluJo SINE Alu 0 312 1 21 36 0 0 chr9 126154427 126154455 -16116989 + AT_rich Low_complexity Low_complexity 1 28 0 295 289 72 64 chr9 126154693 126154942 -16116502 - L1ME LINE L1 -513 5608 5358 22 0 0 0 chr9 126154963 126154985 -16116459 + AT_rich Low_complexity Low_complexity 1 22 0 726 246 106 40 chr9 126155207 126155557 -16115887 - L1ME4a LINE L1 -265 5856 5484 501 302 93 64 chr9 126155820 126156421 -16115023 + L2 LINE L2 2643 3261 -11 418 250 111 28 chr9 126156813 126156957 -16114487 + L1ME LINE L1 5520 5675 -446 2568 61 0 3 chr9 126157018 126157330 -16114114 + AluY SINE Alu 1 311 0 219 69 0 0 chr9 126157499 126157528 -16113916 + (CA)n Simple_repeat Simple_repeat 2 30 0 282 260 21 31 chr9 126157763 126157859 -16113585 - MIR SINE MIR -46 216 122 1338 269 49 18 chr9 126157866 126158315 -16113129 + L1ME4a LINE L1 5434 5896 -225 923 165 6 37 chr9 126158318 126158482 -16112962 + FRAM SINE Alu 1 159 -17 2208 115 7 3 chr9 126158544 126158849 -16112595 + AluSx SINE Alu 1 306 -6 378 242 12 97 chr9 126158870 126159035 -16112409 + L1ME4a LINE L1 5970 6120 -1 430 240 27 137 chr9 126159664 126159956 -16111488 - MIR SINE MIR -1 261 2 190 309 21 43 chr9 126160519 126160613 -16110831 + MIR SINE MIR 14 105 -157 1801 154 0 10 chr9 126160721 126161014 -16110430 + AluJb SINE Alu 23 312 0 2699 163 84 2 chr9 126161034 126161579 -16109865 + L1MB7 LINE L1 5565 6154 -30 1874 109 8 0 chr9 126161581 126161848 -16109596 - AluSx SINE Alu -15 297 29 582 288 31 0 chr9 126161869 126162032 -16109412 - MIR SINE MIR -16 246 79 193 284 113 7 chr9 126162802 126162943 -16108501 + L2 LINE L2 2602 2757 -557 2055 102 0 0 chr9 126162997 126163271 -16108173 + AluSx SINE Alu 1 274 -38 478 317 68 41 chr9 126163631 126163924 -16107520 - LTR16C LTR ERVL -77 414 114 331 254 52 56 chr9 126163980 126164193 -16107251 + L2 LINE L2 2901 3112 -160 794 163 7 0 chr9 126164202 126164337 -16107107 - FRAM SINE Alu 0 40 1 248 281 79 35 chr9 126164372 126164486 -16106958 + L2 LINE L2 3105 3223 -49 441 309 42 6 chr9 126164527 126164692 -16106752 - MIR SINE MIR -3 259 89 225 94 0 0 chr9 126165095 126165127 -16106317 + (TTTCC)n Simple_repeat Simple_repeat 3 34 0 622 135 0 0 chr9 126165143 126165232 -16106212 - AluSg/x SINE Alu -6 303 215 1649 120 120 11 chr9 126165286 126165552 -16105892 - AluSq SINE Alu -18 295 1 183 231 121 77 chr9 126165637 126165728 -16105716 - MIR SINE MIR -98 110 16 1959 125 7 14 chr9 126165857 126166154 -16105290 + AluSx SINE Alu 2 296 -16 483 274 46 7 chr9 126166157 126166310 -16105134 - MIR SINE MIR -73 189 31 377 138 0 0 chr9 126167256 126167314 -16104130 - L1MB8 LINE L1 -9 6169 6112 2107 129 0 0 chr9 126167315 126167618 -16103826 + AluSx SINE Alu 2 304 -8 2610 202 15 17 chr9 126167647 126168104 -16103340 - MER44D DNA MER2_type -1884 603 91 2252 85 0 0 chr9 126168104 126168398 -16103046 - AluSx SINE Alu -18 294 1 2610 202 15 17 chr9 126168398 126168470 -16102974 - MER44D DNA MER2_type -2396 91 20 1970 136 3 7 chr9 126168514 126168816 -16102628 - AluJb SINE Alu -11 301 1 1416 153 56 119 chr9 126168858 126169036 -16102408 - L1MB7 LINE L1 -84 6100 5912 2781 149 28 22 chr9 126169036 126169500 -16101944 + MLT1C LTR MaLR 1 467 0 1416 153 56 119 chr9 126169500 126169562 -16101882 - L1MB7 LINE L1 -272 5912 5848 2202 116 3 0 chr9 126169562 126169872 -16101572 - AluSx SINE Alu -1 311 1 1416 153 56 119 chr9 126169872 126170041 -16101403 - L1MB7 LINE L1 -336 5848 5716 965 154 0 30 chr9 126170047 126170216 -16101228 + FRAM SINE Alu 1 163 -13 287 106 0 188 chr9 126170216 126170240 -16101204 - L1MB7 LINE L1 -471 5707 5680 797 142 0 64 chr9 126170240 126170381 -16101063 - FLAM_C SINE Alu -1 132 1 287 106 0 188 chr9 126170381 126170441 -16101003 - L1MB7 LINE L1 -498 5680 5639 248 299 72 38 chr9 126170441 126170580 -16100864 - MIR SINE MIR -68 140 4 255 203 0 0 chr9 126170580 126170644 -16100800 + (CA)n Simple_repeat Simple_repeat 2 65 0 495 87 0 0 chr9 126171941 126172010 -16099434 + (GGAA)n Simple_repeat Simple_repeat 2 70 0 2308 81 3 0 chr9 126172910 126173207 -16098237 - AluSp SINE Alu -15 298 1 1897 146 3 13 chr9 126173245 126173554 -16097890 + AluJo SINE Alu 1 306 -6 739 122 0 0 chr9 126174583 126174690 -16096754 - AluSc SINE Alu -2 307 201 276 79 0 0 chr9 126174690 126174728 -16096716 - AluSg/x SINE Alu -55 245 208 1758 73 41 12 chr9 126174728 126174973 -16096471 - AluSc SINE Alu -57 252 1 323 324 14 11 chr9 126175121 126175350 -16096094 + MLT1K LTR MaLR 2 270 -318 252 0 0 0 chr9 126175444 126175472 -16095972 + (GA)n Simple_repeat Simple_repeat 1 28 0 544 273 18 18 chr9 126175590 126175755 -16095689 - MLT1K LTR MaLR -2 586 422 874 159 0 0 chr9 126175767 126175934 -16095510 + FRAM SINE Alu 8 174 0 505 244 135 6 chr9 126175936 126176092 -16095352 - MLT1K LTR MaLR -170 418 243 365 320 92 56 chr9 126176321 126176605 -16094839 + L1MCa LINE L1 1914 2207 -4219 755 161 0 8 chr9 126176626 126176744 -16094700 - FLAM_C SINE Alu -16 117 1 508 302 31 44 chr9 126176847 126177003 -16094441 - MIR SINE MIR -39 223 69 2126 86 7 10 chr9 126177003 126177295 -16094149 + AluSg SINE Alu 1 291 -19 508 302 31 44 chr9 126177295 126177363 -16094081 - MIR SINE MIR -193 69 2 1941 101 87 0 chr9 126177486 126177773 -16093671 - AluSx SINE Alu 0 312 1 2328 90 6 0 chr9 126179958 126180269 -16091175 + AluSq SINE Alu 1 313 0 519 189 98 35 chr9 126182022 126182165 -16089279 + MER117 DNA MER1_type 46 197 0 318 204 61 83 chr9 126182410 126182542 -16088902 - MER94 DNA DNA -2 132 4 323 281 70 16 chr9 126183016 126183144 -16088300 + L2 LINE L2 2924 3058 -214 519 248 28 124 chr9 126183288 126183433 -16088011 + MIR SINE MIR 13 127 -135 1767 158 0 7 chr9 126183433 126183741 -16087703 + AluJb SINE Alu 3 308 0 519 248 28 124 chr9 126183741 126183844 -16087600 + MIR SINE MIR 127 238 -24 257 218 158 10 chr9 126183866 126183967 -16087477 + L2 LINE L2 3154 3269 -3 1845 149 0 3 chr9 126184045 126184334 -16087110 - AluJo SINE Alu -20 292 5 632 123 213 0 chr9 126184517 126184639 -16086805 + AluSg/x SINE Alu 162 309 -1 188 286 18 0 chr9 126184678 126184734 -16086710 - L3 LINE CR1 -213 1364 1308 205 320 198 19 chr9 126185225 126185694 -16085750 - L2 LINE L2 -904 2410 1858 1771 135 62 0 chr9 126185814 126186102 -16085342 - AluSx SINE Alu -6 306 1 287 250 60 0 chr9 126186392 126186476 -16084968 - L2 LINE L2 -2 3311 3223 203 152 22 0 chr9 126186606 126186652 -16084792 + C-rich Low_complexity Low_complexity 2 48 0 604 183 7 63 chr9 126187100 126187173 -16084271 - Charlie4 DNA MER1_type 0 1961 1898 2187 125 0 0 chr9 126187173 126187485 -16083959 - AluSq SINE Alu -1 312 1 604 183 7 63 chr9 126187485 126187553 -16083891 - Charlie4 DNA MER1_type -63 1898 1828 1442 120 30 17 chr9 126188386 126188619 -16082825 + AluSg/x SINE Alu 66 301 -9 2195 105 3 0 chr9 126188845 126189150 -16082294 + AluSg SINE Alu 1 306 -4 198 136 91 0 chr9 126189367 126189411 -16082033 + L2 LINE L2 3148 3195 -77 1060 247 161 8 chr9 126189447 126189827 -16081617 + MLT1J2 LTR MaLR 12 449 -1 411 257 40 0 chr9 126189847 126189948 -16081496 + MIR3 SINE MIR 73 177 -31 435 52 0 0 chr9 126189976 126190034 -16081410 + (CA)n Simple_repeat Simple_repeat 2 59 0 618 202 63 102 chr9 126190624 126190684 -16080760 - MIR SINE MIR -30 232 171 434 68 0 0 chr9 126190684 126190743 -16080701 - L1PA16 LINE L1 -10 6156 6098 618 202 63 102 chr9 126190743 126190911 -16080533 - MIR SINE MIR -91 171 13 1607 151 40 29 chr9 126190921 126191227 -16080217 - AluSx SINE Alu 0 309 1 1026 189 20 0 chr9 126191306 126191502 -16079942 + MER20 DNA MER1_type 20 219 0 291 200 0 0 chr9 126191526 126191586 -16079858 + MIR SINE MIR 66 125 -83 194 143 0 0 chr9 126192020 126192055 -16079389 - MIR3 SINE MIR -15 193 159 306 236 90 49 chr9 126192102 126192246 -16079198 + MIR3 SINE MIR 3 152 -56 240 306 27 45 chr9 126192451 126192562 -16078882 - MIR SINE MIR -5 257 149 793 166 98 25 chr9 126192570 126192733 -16078711 + MER63A DNA MER1_type 1 175 -35 262 158 0 70 chr9 126192735 126192792 -16078652 - MIR SINE MIR -67 141 89 327 281 35 9 chr9 126192856 126192970 -16078474 - MIR SINE MIR -72 136 20 442 340 40 22 chr9 126193054 126193299 -16078145 - MIR SINE MIR -14 248 1 216 0 0 0 chr9 126193382 126193406 -16078038 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2305 112 0 0 chr9 126193431 126193743 -16077701 - AluSx SINE Alu 0 312 1 447 273 26 39 chr9 126193757 126193911 -16077533 + MER5B DNA MER1_type 27 178 0 279 339 26 9 chr9 126194201 126194316 -16077128 - L2 LINE L2 0 3313 3197 582 338 23 53 chr9 126194694 126194894 -16076550 - MIR SINE MIR 0 262 70 1607 152 0 91 chr9 126194894 126195236 -16076208 - AluJb SINE Alu -1 311 1 582 338 23 53 chr9 126195236 126195301 -16076143 - MIR SINE MIR -192 70 5 404 234 73 30 chr9 126195417 126195555 -16075889 - MIR SINE MIR -56 152 14 710 281 30 0 chr9 126196282 126196485 -16074959 - MIR SINE MIR 0 262 54 321 241 53 60 chr9 126196975 126197108 -16074336 - MIR3 SINE MIR -52 156 25 273 128 0 0 chr9 126197142 126197189 -16074255 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 301 265 157 10 chr9 126197194 126197296 -16074148 - L2 LINE L2 -6 3307 3191 1207 155 53 42 chr9 126197298 126197445 -16073999 + MER33 DNA MER1_type 1 154 -2431 2003 155 0 0 chr9 126197445 126197754 -16073690 - AluSx SINE Alu -3 309 1 1207 155 53 42 chr9 126197754 126197871 -16073573 + MER33 DNA MER1_type 154 268 -56 1533 170 0 4 chr9 126197872 126198125 -16073319 + AluJo SINE Alu 5 256 -56 218 364 13 0 chr9 126198194 126198271 -16073173 + MIR SINE MIR 8 85 -177 1869 142 26 16 chr9 126198317 126198620 -16072824 - AluJo SINE Alu -6 306 1 197 276 164 36 chr9 126198729 126198954 -16072490 - L2 LINE L2 -338 2976 2723 479 286 16 12 chr9 126199087 126199252 -16072192 + MIR SINE MIR 55 219 -43 426 314 24 0 chr9 126199797 126199921 -16071523 + MIR SINE MIR 64 190 -72 216 177 0 113 chr9 126199956 126200018 -16071426 + L2 LINE L2 2910 2964 -349 218 312 65 11 chr9 126200210 126200303 -16071141 - MIR SINE MIR -78 184 87 2107 97 24 0 chr9 126200873 126201161 -16070283 - AluSq SINE Alu -18 295 1 216 229 16 16 chr9 126201169 126201230 -16070214 + (TTCA)n Simple_repeat Simple_repeat 3 63 0 286 255 69 49 chr9 126201243 126201345 -16070099 + MIR SINE MIR 72 175 -87 201 330 259 0 chr9 126201399 126201511 -16069933 - L2 LINE L2 -6 3266 3126 355 332 58 21 chr9 126201572 126201762 -16069682 + MIR SINE MIR 6 202 -60 186 300 25 75 chr9 126201923 126202043 -16069401 + L2 LINE L2 2915 3028 -244 321 310 52 0 chr9 126202383 126202499 -16068945 + L2 LINE L2 3124 3245 -27 254 333 9 18 chr9 126202642 126202756 -16068688 + MIR SINE MIR 79 191 -71 1817 172 0 0 chr9 126203064 126203372 -16068072 + AluJo SINE Alu 5 312 0 516 297 143 8 chr9 126203857 126204123 -16067321 - LTR16A LTR ERVL 0 450 149 432 218 9 27 chr9 126204392 126204502 -16066942 - MIR SINE MIR -141 121 14 837 224 78 0 chr9 126204871 126205063 -16066381 + MIR SINE MIR 47 253 -9 507 241 119 85 chr9 126205097 126205129 -16066315 - MIR SINE MIR -14 248 219 2136 73 52 0 chr9 126205129 126205416 -16066028 - AluY SINE Alu -9 302 1 507 241 119 85 chr9 126205416 126205619 -16065825 - MIR SINE MIR -43 219 5 258 271 34 22 chr9 126205686 126205820 -16065624 - MIR SINE MIR -48 214 80 181 237 68 34 chr9 126205894 126205953 -16065491 + L2 LINE L2 3132 3192 -80 306 167 0 0 chr9 126205985 126206045 -16065399 + GA-rich Low_complexity Low_complexity 3 62 0 213 159 0 0 chr9 126206611 126206655 -16064789 + (TG)n Simple_repeat Simple_repeat 2 45 0 231 114 0 0 chr9 126206812 126206847 -16064597 + (TG)n Simple_repeat Simple_repeat 1 35 0 357 162 42 54 chr9 126206865 126207032 -16064412 + (TG)n Simple_repeat Simple_repeat 2 166 0 381 215 47 6 chr9 126207293 126207422 -16064022 - MIR SINE MIR -64 144 13 527 244 8 8 chr9 126207553 126207676 -16063768 + MIR SINE MIR 25 147 -115 337 317 28 28 chr9 126208250 126208430 -16063014 - L2 LINE L2 -457 2857 2678 29 28 0 0 chr9 126209249 126209285 -16062159 + GC_rich Low_complexity Low_complexity 1 36 0 246 232 18 0 chr9 126209638 126209694 -16061750 + MIR SINE MIR 93 149 -59 401 304 71 0 chr9 126210663 126210775 -16060669 + L2 LINE L2 3153 3272 0 279 299 86 8 chr9 126211046 126211163 -16060281 + MIR SINE MIR 20 145 -63 1591 190 10 29 chr9 126211209 126211520 -16059924 + AluJb SINE Alu 3 307 -5 294 375 103 19 chr9 126212336 126212898 -16058546 + L2 LINE L2 2622 3229 -43 198 103 0 0 chr9 126213191 126213220 -16058224 + (TG)n Simple_repeat Simple_repeat 1 29 0 1427 302 31 19 chr9 126213463 126214046 -16057398 + MER20B DNA MER1_type 27 616 -167 2297 89 3 0 chr9 126214051 126214353 -16057091 - AluSx SINE Alu -9 303 1 573 228 112 25 chr9 126214368 126214565 -16056879 - MIR SINE MIR -5 257 44 318 291 181 0 chr9 126214530 126214657 -16056787 + MIR SINE MIR 33 182 -80 * 189 261 246 0 chr9 126214648 126214713 -16056731 - MIR SINE MIR -181 81 1 * 385 281 77 15 chr9 126215164 126215360 -16056084 - LTR33 LTR ERVL -280 241 34 377 374 39 6 chr9 126215526 126215705 -16055739 - MIR SINE MIR -77 185 1 298 232 192 0 chr9 126215848 126215947 -16055497 + MIR SINE MIR 33 150 -112 539 216 30 15 chr9 126216506 126216640 -16054804 - MIR SINE MIR -55 153 18 200 330 0 20 chr9 126217256 126217356 -16054088 + L3b LINE CR1 1299 1396 -187 212 258 121 0 chr9 126217369 126217435 -16054009 + L3 LINE CR1 1390 1463 -114 219 233 13 39 chr9 126219522 126219599 -16051845 - MIR SINE MIR -62 146 98 358 240 167 7 chr9 126220602 126220752 -16050692 - MIR SINE MIR -28 234 61 1788 151 13 16 chr9 126221471 126221782 -16049662 - AluJo SINE Alu -2 310 1 354 352 35 0 chr9 126222573 126222715 -16048729 - MER5A DNA MER1_type 0 189 43 355 288 137 0 chr9 126222726 126222879 -16048565 + MIR SINE MIR 34 207 -55 234 311 42 34 chr9 126222918 126223037 -16048407 - L3 LINE CR1 -147 1430 1311 404 297 35 7 chr9 126223764 126223909 -16047535 - MIR SINE MIR -95 167 19 181 278 56 42 chr9 126225752 126225824 -16045620 + MIR SINE MIR 157 229 -33 368 252 19 0 chr9 126226844 126226947 -16044497 + MER81 DNA DNA 10 114 0 2022 140 0 3 chr9 126227013 126227320 -16044124 + AluSx SINE Alu 1 306 -6 415 297 19 32 chr9 126228536 126228691 -16042753 + MIR SINE MIR 106 258 -4 2211 93 21 0 chr9 126228704 126228995 -16042449 + AluSg SINE Alu 1 297 -13 204 83 56 0 chr9 126229450 126229486 -16041958 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 235 307 80 0 chr9 126230518 126230606 -16040838 - MIR SINE MIR -50 212 118 377 252 63 16 chr9 126231471 126231598 -16039846 - L2 LINE L2 -214 3058 2926 235 353 98 6 chr9 126236125 126236298 -16035146 - L3 LINE CR1 -45 1532 1344 266 246 0 16 chr9 126237362 126237423 -16034021 + MIR SINE MIR 129 188 -74 1922 70 83 60 chr9 126238323 126238625 -16032819 - AluSg1 SINE Alu 0 309 1 192 311 16 0 chr9 126242696 126242757 -16028687 - MIR SINE MIR -117 145 84 287 227 27 0 chr9 126243938 126244013 -16027431 + MIR SINE MIR 47 123 -139 2301 106 0 0 chr9 126244182 126244493 -16026951 + AluSx SINE Alu 1 311 -1 2107 106 10 3 chr9 126244678 126244979 -16026465 - AluSq SINE Alu -10 303 1 333 325 72 18 chr9 126245172 126245338 -16026106 - MIR SINE MIR -60 202 28 2228 115 0 6 chr9 126245889 126246201 -16025243 - AluSx SINE Alu -1 311 2 394 284 105 63 chr9 126247550 126247789 -16023655 + L1ME LINE L1 5574 5822 -299 391 277 93 42 chr9 126247824 126247994 -16023450 + L1ME4a LINE L1 1180 6120 -1 195 283 33 92 chr9 126248788 126248908 -16022536 - MIR SINE MIR -113 149 37 187 288 55 0 chr9 126249079 126249152 -16022292 + L2 LINE L2 2665 2741 -573 210 267 244 0 chr9 126249691 126249781 -16021663 + L2 LINE L2 3160 3271 -1 492 316 29 0 chr9 126250916 126251052 -16020392 - MIR3 SINE MIR -38 170 31 198 0 0 0 chr9 126251280 126251302 -16020142 + (A)n Simple_repeat Simple_repeat 1 22 0 350 299 47 90 chr9 126252090 126252187 -16019257 + MIR SINE MIR 35 135 -127 3105 102 5 5 chr9 126252187 126252618 -16018826 - L1PB1 LINE L1 -1 6150 5720 350 299 47 90 chr9 126252618 126252731 -16018713 + MIR SINE MIR 135 236 -26 195 267 139 50 chr9 126252756 126252857 -16018587 - L2 LINE L2 -3 3269 3160 789 126 8 0 chr9 126252958 126253077 -16018367 + FLAM_A SINE Alu 22 141 -1 306 187 160 13 chr9 126303341 126303416 -15968028 - L2 LINE L2 -1 3271 3186 2537 55 0 3 chr9 126303684 126303976 -15967468 - AluY SINE Alu -16 295 5 2070 126 3 13 chr9 126304480 126304782 -15966662 + AluY SINE Alu 1 299 -12 218 245 163 31 chr9 126304870 126304968 -15966476 - L2 LINE L2 -1 3312 3202 2345 101 3 0 chr9 126305460 126305757 -15965687 + AluSp SINE Alu 1 298 -15 204 40 0 0 chr9 126305842 126305867 -15965577 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 604 321 80 0 chr9 126306099 126306323 -15965121 - MIR SINE MIR -1 261 20 3126 181 17 2 chr9 126306700 126307292 -15964152 + L1MB4 LINE L1 5566 6166 -14 196 203 54 108 chr9 126307307 126307381 -15964063 + MIR SINE MIR 18 87 -175 584 194 25 27 chr9 126307786 126307963 -15963481 + L1MA4 LINE L1 5661 5820 -301 618 75 0 0 chr9 126310170 126310263 -15961181 + (GA)n Simple_repeat Simple_repeat 1 93 0 297 264 84 28 chr9 126310516 126310658 -15960786 - MIR SINE MIR -65 143 44 445 274 24 0 chr9 126311000 126311124 -15960320 + L1MC4a LINE L1 5584 5710 -411 1661 169 24 20 chr9 126311164 126311460 -15959984 + AluJo SINE Alu 2 298 -14 247 165 10 206 chr9 126311555 126311652 -15959792 - MER5B DNA MER1_type -98 80 3 2185 109 0 0 chr9 126311960 126312236 -15959208 - AluSc SINE Alu -21 288 13 1254 142 35 5 chr9 126312426 126312632 -15958812 - AluJo SINE Alu -31 281 78 778 214 0 28 chr9 126312872 126313050 -15958394 + MER104 DNA Tc2 1 173 -7 260 259 35 12 chr9 126313139 126313224 -15958220 - L1ME LINE L1 -343 5778 5692 186 324 155 22 chr9 126313337 126313615 -15957829 + L2 LINE L2 2540 2854 -460 424 279 78 28 chr9 126313780 126313959 -15957485 - MIR SINE MIR -61 201 14 233 307 34 11 chr9 126315368 126315456 -15955988 + MIR SINE MIR 93 182 -80 1121 133 0 0 chr9 126316039 126316197 -15955247 + AluSg/x SINE Alu 137 294 -18 257 300 88 19 chr9 126316260 126316420 -15955024 - MIR SINE MIR 0 262 92 553 351 126 24 chr9 126317028 126317441 -15954003 - L2 LINE L2 0 3272 2818 226 320 0 13 chr9 126317667 126317745 -15953699 + Charlie4 DNA MER1_type 1884 1960 -1 2657 163 16 35 chr9 126317854 126318369 -15953075 - L1MB8 LINE L1 -2 6176 5672 1913 148 0 11 chr9 126318627 126318911 -15952533 + AluJo SINE Alu 30 310 -2 342 328 11 37 chr9 126320541 126320730 -15950714 + L1MC4a LINE L1 5728 5911 -1897 27 0 0 0 chr9 126320734 126320761 -15950683 + AT_rich Low_complexity Low_complexity 1 27 0 186 238 24 0 chr9 126321641 126321683 -15949761 + MIR SINE MIR 104 146 -62 249 390 60 6 chr9 126321778 126321960 -15949484 + L2 LINE L2 2596 2787 -527 219 247 84 111 chr9 126322659 126322792 -15948652 + L2 LINE L2 2852 2980 -292 990 176 70 30 chr9 126322792 126322991 -15948453 + MER3 DNA MER1_type 3 209 0 219 247 84 111 chr9 126322991 126323047 -15948397 + L2 LINE L2 2980 3036 -236 2458 86 0 13 chr9 126323169 126323483 -15947961 - AluSx SINE Alu -2 310 1 291 279 117 63 chr9 126324104 126324326 -15947118 - MIR SINE MIR -6 256 23 359 21 21 0 chr9 126325099 126325147 -15946297 + (CA)n Simple_repeat Simple_repeat 2 50 0 554 251 74 65 chr9 126326398 126326629 -15944815 + MIR SINE MIR 30 262 0 2515 243 30 29 chr9 126329100 126329795 -15941649 - L1ME1 LINE L1 -5 6161 5466 6957 202 128 23 chr9 126329803 126332324 -15939120 - L1ME1 LINE L1 -5 6252 3403 3143 159 53 39 chr9 126332317 126332428 -15939016 - L1MD3 LINE L1 0 7995 7887 * 1446 92 10 5 chr9 126332428 126332624 -15938820 + MER107 DNA MER1_type 1 197 0 3143 159 53 39 chr9 126332624 126332883 -15938561 - L1MD3 LINE L1 -108 7887 7633 2048 138 11 62 chr9 126332883 126333238 -15938206 - MER1B DNA MER1_type 0 337 1 3143 159 53 39 chr9 126333238 126333528 -15937916 - L1MD3 LINE L1 -362 7633 7325 268 200 0 0 chr9 126333538 126333593 -15937851 - L1MD3 LINE L1 -877 7118 7064 * 3562 265 92 22 chr9 126333589 126334311 -15937133 - L1ME1 LINE L1 -3958 2438 1768 1689 114 38 0 chr9 126334311 126334547 -15936897 - AluSx SINE Alu -21 291 47 3562 265 92 22 chr9 126334547 126335478 -15935966 - L1ME1 LINE L1 -4628 1768 669 525 237 101 0 chr9 126335495 126335634 -15935810 - L1ME3A LINE L1 -5 6165 6013 * 797 323 100 22 chr9 126335633 126336224 -15935220 - L1ME1 LINE L1 -5705 691 55 689 208 0 0 chr9 126336226 126336346 -15935098 - FRAM SINE Alu -56 120 1 315 85 0 0 chr9 126336636 126336683 -15934761 + (TG)n Simple_repeat Simple_repeat 1 47 0 301 248 257 9 chr9 126336987 126337139 -15934305 - MIR SINE MIR -44 218 31 308 307 59 7 chr9 126337880 126338033 -15933411 - MIR SINE MIR -12 250 90 258 310 172 0 chr9 126338684 126338800 -15932644 + MIR3 SINE MIR 15 150 -58 1892 153 31 0 chr9 126339152 126339446 -15931998 + AluJo SINE Alu 1 303 -9 2327 104 0 0 chr9 126340200 126340499 -15930945 - AluY SINE Alu -12 299 1 2468 77 3 0 chr9 126340500 126340799 -15930645 - AluSx SINE Alu -12 300 1 377 302 44 0 chr9 126341184 126341343 -15930101 - MIR SINE MIR -25 237 72 256 267 60 35 chr9 126342394 126342510 -15928934 - MIR SINE MIR -44 218 100 190 312 130 7 chr9 126342620 126342758 -15928686 + L2 LINE L2 3101 3255 -17 470 83 111 0 chr9 126343186 126343258 -15928186 - MADE1 DNA Mariner 0 80 1 338 191 101 11 chr9 126343523 126343612 -15927832 - MIR SINE MIR -97 165 69 242 250 43 54 chr9 126344677 126344750 -15926694 - MIR SINE MIR -141 121 48 7353 39 24 8 chr9 126344750 126345631 -15925813 - MER11D LTR ERVK 0 897 3 242 250 43 54 chr9 126345631 126345649 -15925795 - MIR SINE MIR -214 48 31 2234 98 10 26 chr9 126345800 126346106 -15925338 + AluSp SINE Alu 5 305 -8 2242 102 0 7 chr9 126346137 126346432 -15925012 + AluSq SINE Alu 1 293 -20 1926 141 0 7 chr9 126346571 126346862 -15924582 - AluSc SINE Alu -13 296 8 399 111 0 0 chr9 126347304 126347358 -15924086 + MER3 DNA MER1_type 156 209 0 281 184 0 0 chr9 126347365 126347414 -15924030 + L2 LINE L2 2988 3036 -236 2076 109 13 19 chr9 126347536 126347848 -15923596 - AluSx SINE Alu -2 310 1 365 291 33 13 chr9 126348522 126348673 -15922771 - MIR SINE MIR -80 182 29 184 289 0 0 chr9 126349721 126349773 -15921671 + L2 LINE L2 3262 3313 0 2115 139 0 0 chr9 126349939 126350233 -15921211 + AluSx SINE Alu 1 294 -18 2041 144 0 25 chr9 126350233 126350553 -15920891 + AluSx SINE Alu 1 312 0 254 258 15 15 chr9 126350628 126350694 -15920750 + L2 LINE L2 3009 3074 -239 302 175 0 0 chr9 126350783 126350840 -15920604 + MIR SINE MIR 99 155 -107 372 337 66 58 chr9 126351520 126351885 -15919559 - L2 LINE L2 0 3272 2905 259 330 54 9 chr9 126353576 126353688 -15917756 + L2 LINE L2 3116 3232 -40 389 71 18 0 chr9 126353726 126353782 -15917662 - MLT2A2 LTR ERVL 0 453 397 248 244 0 0 chr9 126353854 126353899 -15917545 - LTR16B LTR ERVL -2 462 418 2951 73 30 18 chr9 126354041 126354440 -15917004 - MLT2A1 LTR ERVL -40 404 1 217 301 14 14 chr9 126354778 126354851 -15916593 + MIR3 SINE MIR 83 155 -53 2018 118 0 28 chr9 126355131 126355460 -15915984 + AluSc SINE Alu 1 321 0 986 216 15 59 chr9 126355677 126355950 -15915494 + L1ME1 LINE L1 5874 6134 -32 458 247 11 55 chr9 126356035 126356217 -15915227 + L1ME2 LINE L1 5991 6164 0 468 305 30 0 chr9 126356222 126356386 -15915058 + MIR SINE MIR 20 188 -74 324 222 74 52 chr9 126357971 126358106 -15913338 + L2 LINE L2 3129 3266 -6 300 152 0 45 chr9 126358620 126358686 -15912758 - L1ME4a LINE L1 -17 6104 6042 381 248 63 27 chr9 126358694 126358916 -15912528 - L1ME4a LINE L1 -214 5907 5678 244 288 68 17 chr9 126358898 126359016 -15912428 - L1ME4a LINE L1 0 6121 5998 * 623 157 6 38 chr9 126359099 126359258 -15912186 + CT-rich Low_complexity Low_complexity 1 154 0 1782 144 0 61 chr9 126359265 126359577 -15911867 - AluJb SINE Alu -19 293 1 2230 130 0 0 chr9 126359940 126360240 -15911204 + AluSx SINE Alu 1 300 -12 342 268 153 11 chr9 126361016 126361208 -15910236 + MIR SINE MIR 35 250 -12 478 272 80 25 chr9 126362915 126363077 -15908367 + MIR SINE MIR 17 187 -75 390 250 206 33 chr9 126364087 126364267 -15907177 - MIR SINE MIR -27 235 25 304 309 129 37 chr9 126364276 126364493 -15906951 + L2 LINE L2 3015 3251 -21 333 288 128 24 chr9 126365452 126365577 -15905867 - L2 LINE L2 -19 3253 3116 280 358 52 15 chr9 126366518 126366652 -15904792 - MIR SINE MIR -122 140 2 195 42 0 0 chr9 126366682 126366706 -15904738 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 389 229 151 6 chr9 126366963 126367129 -15904315 + MER20B DNA MER1_type 531 720 -63 1406 249 105 25 chr9 126367251 126367737 -15903707 - L1MC4 LINE L1 -1060 6982 6458 2232 120 0 0 chr9 126370169 126370468 -15900976 + AluSq SINE Alu 1 299 -14 234 0 0 0 chr9 126370581 126370607 -15900837 + (TG)n Simple_repeat Simple_repeat 2 27 0 294 347 94 18 chr9 126371056 126371226 -15900218 + MIR SINE MIR 20 202 -60 21 89 0 0 chr9 126372520 126372576 -15898868 + AT_rich Low_complexity Low_complexity 1 56 0 2587 263 95 40 chr9 126373029 126373723 -15897721 + L2 LINE L2 1413 2181 -1133 2387 81 3 3 chr9 126373723 126374030 -15897414 - AluSp SINE Alu -6 307 1 2587 263 95 40 chr9 126374030 126374350 -15897094 + L2 LINE L2 2181 2482 -832 185 258 0 151 chr9 126374846 126374939 -15896505 - L2 LINE L2 0 3272 3194 2196 131 34 17 chr9 126375017 126375375 -15896069 - THE1B LTR MaLR 0 364 1 12047 87 3 2 chr9 126375375 126376954 -15894490 - THE1B-int LTR MaLR 0 1580 1 2243 131 28 14 chr9 126376954 126377313 -15894131 - THE1B LTR MaLR 0 364 1 494 317 62 89 chr9 126377328 126377688 -15893756 - L2 LINE L2 -230 3042 2684 181 279 218 36 chr9 126378816 126378892 -15892552 + MIR SINE MIR 2 63 -199 1966 143 11 22 chr9 126378892 126379257 -15892187 + MER46B DNA MER2_type 1 236 0 181 279 218 36 chr9 126379257 126379345 -15892099 + MIR SINE MIR 63 196 -66 334 367 18 18 chr9 126379767 126379936 -15891508 - MIR SINE MIR -57 205 37 2178 137 0 0 chr9 126380344 126380650 -15890794 + AluSx SINE Alu 1 306 -6 2206 105 13 7 chr9 126380926 126381232 -15890212 + AluSx SINE Alu 3 310 -2 1387 199 37 4 chr9 126381732 126382003 -15889441 - AluJb SINE Alu -30 282 3 614 276 60 20 chr9 126382936 126383186 -15888258 + MIR SINE MIR 1 260 -2 2140 119 0 7 chr9 126383948 126384241 -15887203 - AluSq SINE Alu -22 291 1 2655 159 31 33 chr9 126385341 126385883 -15885561 - L1MB3 LINE L1 -1 6182 5642 501 333 52 20 chr9 126386186 126386438 -15885006 - MIR SINE MIR 0 262 3 21 0 0 0 chr9 126386824 126386845 -15884599 + AT_rich Low_complexity Low_complexity 1 21 0 390 245 153 79 chr9 126387111 126387528 -15883916 - HAL1 LINE L1 0 2507 2060 1652 225 106 24 chr9 126387538 126387671 -15883773 - HAL1 LINE L1 -745 1762 1641 1975 135 7 4 chr9 126387671 126387952 -15883492 - AluSx SINE Alu -17 295 14 1652 225 106 24 chr9 126387952 126388649 -15882795 - HAL1 LINE L1 -866 1641 790 247 312 174 36 chr9 126388940 126389187 -15882257 - HAL1 LINE L1 -1991 516 236 1034 182 9 19 chr9 126389227 126389441 -15882003 - MER20 DNA MER1_type -6 213 2 310 260 41 59 chr9 126389451 126389620 -15881824 - HAL1 LINE L1 -2335 172 7 25 51 0 0 chr9 126389704 126389743 -15881701 + AT_rich Low_complexity Low_complexity 1 39 0 244 268 187 41 chr9 126390514 126390637 -15880807 + MIR SINE MIR 7 147 -115 423 239 228 30 chr9 126391163 126391330 -15880114 - MIR SINE MIR -13 249 50 201 94 0 0 chr9 126391555 126391587 -15879857 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 240 284 40 0 chr9 126393629 126393703 -15877741 - MIR SINE MIR 0 262 186 280 267 53 0 chr9 126393935 126394010 -15877434 + L2 LINE L2 3148 3226 -46 529 239 12 120 chr9 126395189 126395292 -15876152 + L1ME1 LINE L1 4398 4511 -1635 2364 91 0 3 chr9 126395292 126395590 -15875854 + AluY SINE Alu 1 297 -14 529 239 12 120 chr9 126395590 126395664 -15875780 + L1ME1 LINE L1 4511 4591 -1555 2361 96 3 6 chr9 126395664 126395978 -15875466 + AluSp SINE Alu 1 313 0 529 239 12 120 chr9 126395978 126396232 -15875212 + L1ME1 LINE L1 4591 4799 -1347 12182 85 9 3 chr9 126396240 126398734 -15872710 + L1PA7 LINE L1 3645 6153 -1 2624 208 67 31 chr9 126398742 126400155 -15871289 + L1ME1 LINE L1 4698 6163 -3 632 245 170 9 chr9 126400234 126400446 -15870998 + MIR SINE MIR 15 260 -2 2330 83 3 3 chr9 126400448 126400748 -15870696 - AluSp SINE Alu -13 300 1 1959 161 0 23 chr9 126400750 126401054 -15870390 - AluJo SINE Alu -15 297 1 272 154 13 39 chr9 126401055 126401133 -15870311 - HAL1 LINE L1 -1419 1088 1013 2161 119 0 7 chr9 126401138 126401433 -15870011 - AluSg SINE Alu -17 293 1 978 178 11 42 chr9 126401443 126401634 -15869810 - AluJo SINE Alu -22 290 106 1090 181 68 60 chr9 126401831 126402010 -15869434 - L1M4 LINE L1 -1415 4731 4555 2394 157 44 33 chr9 126402010 126402469 -15868975 - MLT2C2 LTR ERVL 0 464 1 1090 181 68 60 chr9 126402469 126402654 -15868790 - L1M4 LINE L1 -1591 4555 4364 588 238 35 0 chr9 126402679 126402851 -15868593 + L1ME1 LINE L1 4960 5137 -1009 3748 246 69 36 chr9 126402859 126404651 -15866793 + L1M3e LINE L1 7 2748 -4358 1761 143 59 25 chr9 126404651 126404937 -15866507 - AluSx SINE Alu -16 296 1 3748 246 69 36 chr9 126404937 126405292 -15866152 + L1M3e LINE L1 2748 3090 -4016 1366 217 23 23 chr9 126405293 126405638 -15865806 + L1ME1 LINE L1 5812 6156 -10 586 308 133 78 chr9 126405669 126406352 -15865092 + L1MEd LINE L1 7 727 -5392 348 366 17 29 chr9 126406449 126406624 -15864820 + L1MEd LINE L1 947 1119 -5000 24 32 0 0 chr9 126408624 126408655 -15862789 + AT_rich Low_complexity Low_complexity 1 31 0 808 259 7 49 chr9 126408986 126409291 -15862153 - AluJb SINE Alu -9 293 2 235 274 0 0 chr9 126409323 126409374 -15862070 - MIR SINE MIR -165 97 47 647 203 79 11 chr9 126410606 126410783 -15860661 + MIR SINE MIR 65 253 -9 2110 106 14 0 chr9 126410999 126411282 -15860162 - AluSc SINE Alu -22 287 1 1697 238 63 77 chr9 126411731 126411912 -15859532 - L1ME3A LINE L1 -28 6211 6029 1217 208 92 41 chr9 126411912 126412205 -15859239 - AluJo SINE Alu -4 308 1 1697 238 63 77 chr9 126412205 126412827 -15858617 - L1ME3A LINE L1 -210 6029 5419 728 97 48 0 chr9 126412937 126413061 -15858383 - L1MA7 LINE L1 -2 6289 6160 2038 105 0 0 chr9 126413068 126413335 -15858109 - AluSx SINE Alu -20 292 26 1211 271 83 40 chr9 126413335 126414161 -15857283 - L1ME3A LINE L1 -1198 5017 4148 2382 92 3 6 chr9 126414161 126414475 -15856969 - AluSq SINE Alu 0 313 1 1211 271 83 40 chr9 126414475 126414547 -15856897 - L1ME3A LINE L1 -2067 4148 4081 1352 193 67 50 chr9 126414555 126414974 -15856470 - L1ME2 LINE L1 0 6164 5739 744 295 64 8 chr9 126415023 126415399 -15856045 - L1ME3A LINE L1 -2322 3893 3497 183 80 0 0 chr9 126415587 126415612 -15855832 + (TTG)n Simple_repeat Simple_repeat 3 27 0 565 282 38 41 chr9 126416254 126416808 -15854636 - L1MEc LINE L1 -4634 1622 1019 392 306 117 24 chr9 126416889 126417095 -15854349 - L1MEc LINE L1 -5387 1009 785 561 133 0 67 chr9 126417535 126417640 -15853804 - AluJb SINE Alu -29 283 186 212 0 36 0 chr9 126417640 126417668 -15853776 + (TA)n Simple_repeat Simple_repeat 2 30 0 1214 190 4 4 chr9 126418623 126418849 -15852595 - AluJb SINE Alu -1 311 86 603 246 46 74 chr9 126418910 126419194 -15852250 - MLT1I LTR MaLR -18 391 116 1182 223 121 12 chr9 126419385 126419708 -15851736 + HsTC2b DNA Tc2 15 372 -543 207 100 0 0 chr9 126419709 126419739 -15851705 + (T)n Simple_repeat Simple_repeat 1 30 0 448 240 122 14 chr9 126419785 126420006 -15851438 + HsTC2b DNA Tc2 674 918 0 214 250 0 0 chr9 126420898 126420938 -15850506 + L2 LINE L2 3222 3261 -11 639 315 90 61 chr9 126421068 126422016 -15849428 + L2 LINE L2 2292 3272 0 202 176 0 0 chr9 126422030 126422064 -15849380 + MIR SINE MIR 156 189 -73 485 270 99 9 chr9 126422188 126422410 -15849034 - MER112 DNA MER1_type -16 244 3 188 377 0 0 chr9 126422441 126422502 -15848942 - L3b LINE CR1 -68 1515 1455 329 273 96 48 chr9 126423814 126424001 -15847443 + L1M4 LINE L1 3341 3536 -2610 21 0 0 0 chr9 126424354 126424375 -15847069 + AT_rich Low_complexity Low_complexity 1 21 0 616 294 145 14 chr9 126424394 126424836 -15846608 - MLT1H1 LTR MaLR -24 531 32 25 90 0 0 chr9 126425111 126425178 -15846266 + AT_rich Low_complexity Low_complexity 1 67 0 1947 131 3 45 chr9 126425219 126425532 -15845912 + AluSx SINE Alu 1 300 -12 237 257 42 56 chr9 126425906 126425923 -15845521 - L1ME LINE L1 -274 5847 5831 795 223 27 0 chr9 126425923 126426107 -15845337 - MER5A DNA MER1_type 0 189 1 237 257 42 56 chr9 126426107 126426219 -15845225 - L1ME LINE L1 -290 5831 5718 1666 114 86 81 chr9 126426219 126426487 -15844957 + MER46B DNA MER2_type 1 148 -2583 468 51 0 0 chr9 126426487 126426546 -15844898 + (TG)n Simple_repeat Simple_repeat 2 60 0 1666 114 86 81 chr9 126426546 126426636 -15844808 + MER46B DNA MER2_type 148 236 0 237 257 42 56 chr9 126426636 126426649 -15844795 - L1ME LINE L1 -403 5718 5706 2342 61 7 14 chr9 126426652 126426949 -15844495 + AluY SINE Alu 1 295 -16 194 345 0 17 chr9 126426962 126427020 -15844424 - MIR3 SINE MIR -143 65 9 315 0 0 0 chr9 126427157 126427192 -15844252 + (CA)n Simple_repeat Simple_repeat 2 36 0 2197 128 0 3 chr9 126427338 126427651 -15843793 - AluSx SINE Alu 0 312 1 238 323 105 32 chr9 126429144 126429268 -15842176 - L2 LINE L2 -1 3312 3180 2151 99 0 3 chr9 126429697 126430010 -15841434 + AluSx SINE Alu 1 312 0 186 128 0 0 chr9 126430238 126430277 -15841167 + (TG)n Simple_repeat Simple_repeat 2 40 0 309 245 27 75 chr9 126430799 126430946 -15840498 - L1ME4a LINE L1 -16 6105 5966 757 271 96 30 chr9 126431302 126431836 -15839608 - L1ME4a LINE L1 -212 5909 5341 192 77 0 0 chr9 126432573 126432599 -15838845 + (A)n Simple_repeat Simple_repeat 1 26 0 468 0 0 0 chr9 126433036 126433088 -15838356 + (TG)n Simple_repeat Simple_repeat 1 52 0 219 36 0 0 chr9 126433087 126433115 -15838329 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 * 2173 216 71 20 chr9 126433560 126434316 -15837128 + L1MC4 LINE L1 6467 7409 -633 624 231 193 8 chr9 126434327 126434570 -15836874 + L1MC4 LINE L1 7501 7788 -254 1070 122 23 0 chr9 126434571 126434743 -15836701 - MSTD LTR MaLR -2 394 219 431 209 178 8 chr9 126434779 126434908 -15836536 - MSTD LTR MaLR -245 151 1 264 232 211 0 chr9 126434908 126435003 -15836441 + L1MC4 LINE L1 7783 7897 -145 291 312 64 16 chr9 126435218 126435343 -15836101 + MIR SINE MIR 14 144 -118 389 309 40 76 chr9 126436513 126436762 -15834682 + L2 LINE L2 2938 3177 -95 362 331 61 12 chr9 126436865 126437028 -15834416 + MIR3 SINE MIR 38 208 0 342 293 127 33 chr9 126437345 126437526 -15833918 - MIR SINE MIR -59 203 6 201 118 59 0 chr9 126437532 126437566 -15833878 + GA-rich Low_complexity Low_complexity 1 36 0 262 308 98 8 chr9 126438356 126438489 -15832955 - MIR SINE MIR -49 213 69 614 276 60 20 chr9 126438792 126439042 -15832402 + MIR SINE MIR 1 260 -2 2140 119 0 7 chr9 126439804 126440097 -15831347 - AluSq SINE Alu -22 291 1 2662 157 31 33 chr9 126441196 126441738 -15829706 - L1MB3 LINE L1 -1 6182 5642 517 329 52 20 chr9 126442041 126442293 -15829151 - MIR SINE MIR 0 262 3 21 0 0 0 chr9 126442679 126442700 -15828744 + AT_rich Low_complexity Low_complexity 1 21 0 275 251 85 40 chr9 126442734 126442957 -15828487 + L1M4 LINE L1 2890 3122 -3024 232 275 14 0 chr9 126443750 126443819 -15827625 + C-rich Low_complexity Low_complexity 3 72 0 21 0 0 0 chr9 126444008 126444029 -15827415 + AT_rich Low_complexity Low_complexity 1 21 0 437 240 153 79 chr9 126444296 126444713 -15826731 - HAL1 LINE L1 0 2507 2060 1652 252 141 46 chr9 126444723 126444856 -15826588 - HAL1 LINE L1 -745 1762 1643 1975 135 7 4 chr9 126444856 126445137 -15826307 - AluSx SINE Alu -17 295 14 1652 252 141 46 chr9 126445137 126446330 -15825114 - HAL1 LINE L1 -864 1643 236 996 183 14 19 chr9 126446370 126446583 -15824861 - MER20 DNA MER1_type -6 213 2 310 260 41 59 chr9 126446593 126446762 -15824682 - HAL1 LINE L1 -2335 172 7 25 51 0 0 chr9 126446846 126446885 -15824559 + AT_rich Low_complexity Low_complexity 1 39 0 244 268 187 41 chr9 126447656 126447779 -15823665 + MIR SINE MIR 7 147 -115 423 239 228 30 chr9 126448305 126448472 -15822972 - MIR SINE MIR -13 249 50 201 94 0 0 chr9 126448697 126448729 -15822715 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 222 211 19 0 chr9 126449990 126450042 -15821402 + C-rich Low_complexity Low_complexity 5 57 0 395 396 51 18 chr9 126450853 126451126 -15820318 + L2 LINE L2 2443 2724 -590 273 333 63 8 chr9 126451423 126451549 -15819895 + L2 LINE L2 3174 3306 -7 305 308 116 0 chr9 126452227 126452373 -15819071 - L2 LINE L2 -174 3098 2936 509 276 66 62 chr9 126453400 126453643 -15817801 + MIR SINE MIR 7 250 -12 561 237 66 50 chr9 126453753 126453951 -15817493 + MIR SINE MIR 20 220 -42 215 360 23 0 chr9 126454064 126454150 -15817294 + MIR SINE MIR 162 249 -13 243 342 88 9 chr9 126454899 126455013 -15816431 + MIR SINE MIR 28 150 -112 431 290 99 33 chr9 126455689 126455992 -15815452 - L1ME LINE L1 -302 5819 5497 203 279 0 0 chr9 126456005 126456048 -15815396 + (TG)n Simple_repeat Simple_repeat 1 43 0 23 0 0 0 chr9 126456264 126456287 -15815157 + AT_rich Low_complexity Low_complexity 1 23 0 2179 125 7 0 chr9 126456497 126456793 -15814651 - AluSx SINE Alu -4 308 11 573 188 38 38 chr9 126457425 126457558 -15813886 - MIR SINE MIR -5 257 125 282 203 87 0 chr9 126457588 126457657 -15813787 + HAL1 LINE L1 11 85 -2422 441 334 59 13 chr9 126457697 126458086 -15813358 + L1ME3A LINE L1 3334 3740 -2406 1359 263 93 22 chr9 126458183 126459049 -15812395 + L1ME3A LINE L1 4503 5440 -730 1639 176 24 14 chr9 126459053 126459349 -15812095 + AluJo SINE Alu 1 299 -13 310 294 85 68 chr9 126459470 126459810 -15811634 + L1ME3A LINE L1 5606 5951 -219 587 243 14 0 chr9 126460323 126460471 -15810973 + HAL1 LINE L1 1453 1602 -905 325 250 114 0 chr9 126460473 126460605 -15810839 + L2 LINE L2 1413 1559 -1755 554 304 20 28 chr9 126460633 126460880 -15810564 - L2 LINE L2 -45 3268 3024 736 224 81 72 chr9 126460890 126461211 -15810233 + L2 LINE L2 1585 1908 -1406 252 200 0 18 chr9 126461219 126461274 -15810170 + MIR SINE MIR 180 233 -29 21 0 0 0 chr9 126461286 126461307 -15810137 + AT_rich Low_complexity Low_complexity 1 21 0 454 228 138 8 chr9 126461337 126461460 -15809984 + L2 LINE L2 3170 3308 -5 269 203 170 59 chr9 126461566 126461719 -15809725 + HAL1 LINE L1 2327 2496 -11 285 274 91 41 chr9 126462558 126462681 -15808763 - MIR SINE MIR -63 145 46 325 281 15 30 chr9 126462899 126463034 -15808410 - MARNA DNA Mariner -247 339 207 290 284 136 54 chr9 126463205 126463425 -15808019 - MIR SINE MIR -23 239 6 21 0 0 0 chr9 126464836 126464857 -15806587 + AT_rich Low_complexity Low_complexity 1 21 0 456 282 32 27 chr9 126465467 126465655 -15805789 + MER5A DNA MER1_type 1 189 0 186 43 0 0 chr9 126465970 126465993 -15805451 + (T)n Simple_repeat Simple_repeat 1 23 0 430 294 27 22 chr9 126466585 126466769 -15804675 + MIR SINE MIR 68 252 -10 938 224 27 9 chr9 126467370 126467593 -15803851 + MIR SINE MIR 10 236 -26 2302 94 3 3 chr9 126467625 126467923 -15803521 - AluSp SINE Alu 0 313 16 1800 148 0 47 chr9 126467959 126468277 -15803167 - AluSx SINE Alu -9 303 1 441 95 0 0 chr9 126468330 126468393 -15803051 + (T)n Simple_repeat Simple_repeat 1 63 0 244 280 97 114 chr9 126468609 126468672 -15802772 + MER117 DNA MER1_type 3 66 -131 1815 122 41 11 chr9 126468672 126468943 -15802501 + AluSx SINE Alu 1 279 -33 244 280 97 114 chr9 126468943 126469054 -15802390 + MER117 DNA MER1_type 66 174 -23 513 47 0 0 chr9 126469458 126469522 -15801922 + (TG)n Simple_repeat Simple_repeat 2 65 0 2280 75 38 0 chr9 126470443 126470735 -15800709 + AluSp SINE Alu 1 303 -10 206 310 95 43 chr9 126470781 126470853 -15800591 - L2 LINE L2 0 3272 3190 1963 108 0 0 chr9 126470853 126471111 -15800333 + AluSx SINE Alu 38 295 -17 206 310 95 43 chr9 126471111 126471154 -15800290 - L2 LINE L2 -82 3190 3151 390 293 24 8 chr9 126471444 126471567 -15799877 - MIR3 SINE MIR -6 202 78 438 216 39 0 chr9 126472011 126472113 -15799331 + MIR SINE MIR 45 150 -58 207 139 0 0 chr9 126473537 126473573 -15797871 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 2197 115 0 13 chr9 126473632 126473936 -15797508 - AluSx SINE Alu -8 304 5 2198 109 0 0 chr9 126474225 126474509 -15796935 + AluSx SINE Alu 1 284 -28 31 0 0 0 chr9 126474509 126474540 -15796904 + AT_rich Low_complexity Low_complexity 1 31 0 280 288 88 16 chr9 126475707 126475832 -15795612 + L1P5 LINE L1 4885 5018 -1128 251 257 72 11 chr9 126476035 126476192 -15795252 + L1P5 LINE L1 5309 5452 -699 1074 200 0 24 chr9 126477171 126477376 -15794068 + AluJo SINE Alu 85 284 -28 244 270 142 27 chr9 126477796 126477944 -15793500 + MIR SINE MIR 88 252 -10 289 323 56 33 chr9 126479311 126479514 -15791930 + MIR3 SINE MIR 7 212 -50 234 81 0 0 chr9 126479638 126479675 -15791769 + (TC)n Simple_repeat Simple_repeat 1 37 0 2206 105 3 3 chr9 126479675 126479971 -15791473 - AluSg SINE Alu -11 299 4 221 318 15 0 chr9 126479993 126480059 -15791385 - L2 LINE L2 -12 3260 3194 188 200 18 0 chr9 126480922 126480977 -15790467 + GA-rich Low_complexity Low_complexity 2 57 0 1544 170 18 22 chr9 126481249 126481525 -15789919 + AluJb SINE Alu 9 283 -29 2142 136 0 16 chr9 126481655 126481972 -15789472 - AluSx SINE Alu 0 312 1 358 287 22 22 chr9 126482108 126482244 -15789200 - MIR SINE MIR -34 228 93 474 213 98 29 chr9 126482318 126482492 -15788952 + L1ME4a LINE L1 5930 6115 -6 317 354 50 11 chr9 126483905 126484086 -15787358 + MIR SINE MIR 11 198 -64 21 36 0 0 chr9 126484271 126484299 -15787145 + AT_rich Low_complexity Low_complexity 1 28 0 546 272 109 10 chr9 126484605 126484807 -15786637 - MIR SINE MIR -1 261 40 332 175 0 0 chr9 126484947 126485004 -15786440 - L2 LINE L2 0 3313 3257 2033 148 7 3 chr9 126485949 126486252 -15785192 + AluSx SINE Alu 1 304 -8 367 269 15 46 chr9 126486843 126486973 -15784471 + MIR3 SINE MIR 5 130 -78 2402 109 0 3 chr9 126487190 126487501 -15783943 - AluSx SINE Alu 0 312 3 305 120 0 23 chr9 126487652 126487714 -15783730 - L1MB7 LINE L1 -2 6164 6106 1430 189 26 19 chr9 126487725 126487995 -15783449 + AluJb SINE Alu 9 280 -32 276 30 0 0 chr9 126487995 126488028 -15783416 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 2380 104 3 0 chr9 126488187 126488496 -15782948 + AluSx SINE Alu 1 310 -2 321 248 142 18 chr9 126490321 126490434 -15781010 + MIR SINE MIR 66 192 -70 2151 128 0 0 chr9 126491197 126491487 -15779957 + AluSx SINE Alu 1 290 -22 529 308 7 0 chr9 126492076 126492222 -15779222 + MIR SINE MIR 46 192 -70 384 259 145 1 chr9 126493185 126493389 -15778055 + MIR SINE MIR 23 252 -10 1567 223 68 5 chr9 126493615 126493997 -15777447 + HsTC2 DNA Tc2 75 480 -1418 610 173 39 62 chr9 126494000 126494179 -15777265 + HsTC2 DNA Tc2 1577 1751 -147 426 250 96 13 chr9 126494716 126494872 -15776572 + L1ME4a LINE L1 5695 5863 -258 192 77 0 0 chr9 126496229 126496255 -15775189 + (GAA)n Simple_repeat Simple_repeat 2 27 0 380 274 59 54 chr9 126496963 126497149 -15774295 + MIR SINE MIR 45 231 -31 973 268 112 27 chr9 126498299 126498825 -15772619 - L1ME4a LINE L1 -2 6119 5549 297 0 0 0 chr9 126499846 126499879 -15771565 + (CA)n Simple_repeat Simple_repeat 1 33 0 252 0 0 0 chr9 126499878 126499906 -15771538 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 297 0 0 0 chr9 126499905 126499938 -15771506 + (TG)n Simple_repeat Simple_repeat 2 34 0 204 67 0 0 chr9 126499938 126499968 -15771476 + (TC)n Simple_repeat Simple_repeat 2 31 0 273 269 39 13 chr9 126500177 126500255 -15771189 - L2 LINE L2 -2 3270 3191 275 385 30 30 chr9 126500554 126500720 -15770724 + L2 LINE L2 3102 3267 -5 544 306 28 0 chr9 126502340 126502520 -15768924 + MIR SINE MIR 70 254 -8 328 235 68 38 chr9 126503263 126503395 -15768049 - L2 LINE L2 -464 2850 2715 1173 141 17 90 chr9 126504525 126504759 -15766685 + AluJo SINE Alu 86 302 -10 252 243 103 76 chr9 126504841 126504981 -15766463 - MIR SINE MIR -10 252 104 1354 204 19 72 chr9 126504981 126505344 -15766100 - MER2 DNA MER2_type 0 344 1 252 243 103 76 chr9 126505344 126505388 -15766056 - MIR SINE MIR -158 104 63 187 289 62 62 chr9 126506482 126506579 -15764865 + MIR3 SINE MIR 4 100 -108 1165 120 0 0 chr9 126506583 126506741 -15764703 - AluSg/x SINE Alu -18 292 135 433 297 42 12 chr9 126506988 126507153 -15764291 + MIR SINE MIR 92 261 -1 401 232 28 78 chr9 126507724 126507866 -15763578 + MIR SINE MIR 14 148 -114 189 0 0 0 chr9 126508948 126508969 -15762475 + (T)n Simple_repeat Simple_repeat 1 21 0 464 179 32 0 chr9 126510526 126510621 -15760823 - MIR SINE MIR -117 145 48 441 300 77 6 chr9 126510830 126511000 -15760444 + MIR SINE MIR 20 201 -61 187 147 0 0 chr9 126511394 126511428 -15760016 - MIR SINE MIR -110 152 119 288 340 40 20 chr9 126511685 126511835 -15759609 - MIR SINE MIR -77 185 33 223 127 0 73 chr9 126512508 126512563 -15758881 + (TTTCC)n Simple_repeat Simple_repeat 5 55 0 302 287 108 8 chr9 126512648 126512777 -15758667 + MIR SINE MIR 9 150 -112 228 254 36 0 chr9 126512997 126513052 -15758392 + MIR SINE MIR 79 135 -73 2087 122 143 8 chr9 126513277 126513654 -15757790 - MSTA LTR MaLR 0 428 1 368 323 26 13 chr9 126514086 126514241 -15757203 - MIR SINE MIR -71 191 35 333 315 37 0 chr9 126514445 126514553 -15756891 - MIR SINE MIR 0 262 151 827 160 0 0 chr9 126514622 126514753 -15756691 + FLAM_A SINE Alu 1 131 -2 685 211 7 20 chr9 126514780 126514932 -15756512 - L1ME3A LINE L1 -52 6118 5969 672 228 14 0 chr9 126514932 126515077 -15756367 - MIR SINE MIR -97 165 19 543 300 109 4 chr9 126515267 126515497 -15755947 - MIR SINE MIR -2 260 7 292 192 178 0 chr9 126515733 126515806 -15755638 - L2 LINE L2 -18 3254 3169 478 236 80 11 chr9 126516663 126516846 -15754598 - L1ME1 LINE L1 -5 6161 5998 825 245 47 0 chr9 126516846 126517058 -15754386 - MIR SINE MIR -39 223 2 404 314 13 31 chr9 126517342 126517501 -15753943 - MIR SINE MIR -19 243 88 234 0 0 0 chr9 126517752 126517778 -15753666 + (T)n Simple_repeat Simple_repeat 1 26 0 1608 142 0 0 chr9 126518360 126518592 -15752852 + AluSg SINE Alu 1 232 -78 2519 55 0 0 chr9 126518699 126518988 -15752456 - AluY SINE Alu -21 290 2 293 253 188 18 chr9 126519100 126519270 -15752174 - MIR SINE MIR -44 218 20 306 213 0 0 chr9 126520451 126520512 -15750932 - MER103 DNA DNA -92 74 14 611 247 76 44 chr9 126520841 126521303 -15750141 - LTR33A LTR ERVL 0 523 2 332 285 44 29 chr9 126521382 126521519 -15749925 + MIR SINE MIR 6 144 -118 333 289 42 35 chr9 126521887 126522029 -15749415 + MIR SINE MIR 69 211 -51 507 259 45 25 chr9 126522613 126522814 -15748630 - L2 LINE L2 -14 3299 3095 589 209 153 10 chr9 126523430 126523626 -15747818 + MIR SINE MIR 37 260 -2 22 35 0 0 chr9 126523838 126523867 -15747577 + AT_rich Low_complexity Low_complexity 1 29 0 2278 56 0 0 chr9 126523904 126524171 -15747273 - AluY SINE Alu -11 300 34 2801 185 62 98 chr9 126524403 126524920 -15746524 - L1MC5 LINE L1 -433 7528 6994 495 113 0 0 chr9 126524920 126525000 -15746444 + (TA)n Simple_repeat Simple_repeat 2 81 0 2801 185 62 98 chr9 126525000 126525019 -15746425 - L1MC5 LINE L1 -967 6994 6976 360 43 0 0 chr9 126525019 126525065 -15746379 + (CA)n Simple_repeat Simple_repeat 1 46 0 2801 185 62 98 chr9 126525065 126525608 -15745836 - L1MC5 LINE L1 -985 6976 6476 388 291 101 36 chr9 126525971 126526415 -15745029 - HAL1b LINE L1 -809 539 67 2129 120 40 0 chr9 126527315 126527614 -15743830 - AluSq SINE Alu -2 311 1 833 256 103 39 chr9 126527929 126528316 -15743128 - L2 LINE L2 -98 3215 2804 987 163 7 0 chr9 126528357 126528510 -15742934 - FRAM SINE Alu -23 153 1 714 268 149 7 chr9 126528514 126528816 -15742628 - L2 LINE L2 -531 2783 2439 580 265 94 43 chr9 126528866 126529278 -15742166 + L1ME2 LINE L1 5167 5603 -561 302 262 177 30 chr9 126529300 126529464 -15741980 + L1ME2 LINE L1 5681 5867 -297 230 208 0 0 chr9 126530554 126530602 -15740842 - L2 LINE L2 -15 3257 3210 1420 185 81 3 chr9 126531295 126531592 -15739852 + L1MC4 LINE L1 7514 7833 -209 811 182 19 121 chr9 126532082 126532203 -15739241 + L1MC4 LINE L1 7806 7887 -155 441 0 0 0 chr9 126532203 126532252 -15739192 + (TG)n Simple_repeat Simple_repeat 2 50 0 811 182 19 121 chr9 126532252 126532394 -15739050 + L1MC4 LINE L1 7887 8042 0 1825 131 49 18 chr9 126532788 126533117 -15738327 + MER44D DNA MER2_type 1 609 0 421 303 67 20 chr9 126533318 126533572 -15737872 - HAL1 LINE L1 -867 1640 1375 * 422 245 41 69 chr9 126533568 126533813 -15737631 - L1MEd LINE L1 -4875 1244 1007 250 282 13 13 chr9 126533880 126533958 -15737486 - MIR SINE MIR -164 98 21 290 326 87 6 chr9 126535785 126535957 -15735487 - MIR SINE MIR -24 238 53 683 334 101 28 chr9 126536100 126537237 -15734207 - L2 LINE L2 -115 3157 1862 264 235 0 0 chr9 126537604 126537672 -15733772 + (TG)n Simple_repeat Simple_repeat 2 69 0 1828 144 37 27 chr9 126537753 126538052 -15733392 + AluJb SINE Alu 1 302 -10 313 340 0 0 chr9 126538629 126538735 -15732709 + MIR SINE MIR 40 145 -117 350 223 50 74 chr9 126539175 126539296 -15732148 + Charlie8 DNA MER1_type 1 118 -2299 181 174 0 65 chr9 126539529 126539575 -15731869 - L2 LINE L2 0 3313 3271 183 326 54 65 chr9 126540344 126540528 -15730916 + MIR SINE MIR 47 228 -34 286 279 12 12 chr9 126540784 126540870 -15730574 + L2 LINE L2 3133 3218 -54 258 264 85 85 chr9 126541865 126542066 -15729378 - MIR SINE MIR -29 233 33 370 274 81 8 chr9 126542351 126542475 -15728969 - MIR SINE MIR -122 140 8 226 314 14 14 chr9 126542949 126543019 -15728425 - L2 LINE L2 -4 3268 3199 537 258 66 101 chr9 126543253 126543342 -15728102 - MLT1L LTR MaLR -212 403 312 2003 119 21 7 chr9 126543342 126543627 -15727817 - AluSq SINE Alu -16 297 9 1787 168 40 0 chr9 126543635 126543932 -15727512 - AluJo SINE Alu -3 309 1 537 258 66 101 chr9 126543932 126544092 -15727352 - MLT1L LTR MaLR -310 305 162 1563 189 73 0 chr9 126544092 126544367 -15727077 + AluSx SINE Alu 1 295 -17 537 258 66 101 chr9 126544367 126544514 -15726930 - MLT1L LTR MaLR -453 162 11 420 320 155 29 chr9 126544716 126545135 -15726309 - L2 LINE L2 -337 2977 2506 24 0 0 0 chr9 126545202 126545226 -15726218 + AT_rich Low_complexity Low_complexity 1 24 0 691 263 135 68 chr9 126545820 126546141 -15725303 - L1ME4a LINE L1 -1 6120 5822 2003 127 11 3 chr9 126546141 126546470 -15724974 - AluSx SINE Alu 0 331 1 691 263 135 68 chr9 126546470 126546535 -15724909 - L1ME4a LINE L1 -299 5822 5763 1706 58 0 5 chr9 126546535 126546740 -15724704 - AluY SINE Alu -9 302 99 691 263 135 68 chr9 126546740 126546886 -15724558 - L1ME4a LINE L1 -358 5763 5628 2277 105 7 7 chr9 126546886 126547182 -15724262 - AluSc SINE Alu -13 296 1 691 263 135 68 chr9 126547182 126547342 -15724102 - L1ME4a LINE L1 -493 5628 5378 384 22 0 0 chr9 126547631 126547676 -15723768 + (TG)n Simple_repeat Simple_repeat 2 46 0 1505 119 25 53 chr9 126547698 126547941 -15723503 - AluJb SINE Alu -28 284 49 447 164 0 0 chr9 126547943 126548016 -15723428 - AluJ/FLAM SINE Alu -236 76 4 642 221 23 178 chr9 126548142 126548479 -15722965 - L1MC4 LINE L1 0 8042 7801 337 87 0 0 chr9 126548479 126548525 -15722919 + MADE1 DNA Mariner 35 80 0 642 221 23 178 chr9 126548525 126548793 -15722651 - L1MC4 LINE L1 -241 7801 7493 1374 249 81 8 chr9 126548820 126549202 -15722242 - L1MC4 LINE L1 -1166 6876 6467 378 0 0 0 chr9 126549652 126549694 -15721750 + (CA)n Simple_repeat Simple_repeat 2 43 0 462 283 103 5 chr9 126550818 126551002 -15720442 - MIR SINE MIR -29 233 32 218 287 59 30 chr9 126552449 126552550 -15718894 - MIR SINE MIR -87 121 17 439 320 71 9 chr9 126552770 126552995 -15718449 - L3 LINE CR1 -11 1566 1328 237 302 94 9 chr9 126553128 126553234 -15718210 + MIR SINE MIR 34 148 -114 262 323 48 11 chr9 126553903 126554089 -15717355 - L2 LINE L2 -890 2424 2232 1295 147 124 31 chr9 126555901 126556196 -15715248 - AluJo SINE Alu 0 320 2 2236 121 0 13 chr9 126556547 126556861 -15714583 - AluSx SINE Alu -2 310 1 466 225 94 25 chr9 126556962 126557122 -15714322 + MIR SINE MIR 20 190 -72 2434 85 7 0 chr9 126557156 126557462 -15713982 - AluSc SINE Alu -1 308 1 1051 255 4 0 chr9 126557476 126557711 -15713733 - MIR SINE MIR -21 241 6 265 298 29 0 chr9 126559045 126559149 -15712295 + MIR3 SINE MIR 102 208 0 449 319 84 9 chr9 126560379 126560605 -15710839 - MIR SINE MIR -12 250 8 262 341 24 8 chr9 126560642 126560765 -15710679 - MIR SINE MIR -21 241 117 1644 202 31 3 chr9 126560917 126561441 -15710003 + L1MB3 LINE L1 4989 5526 -657 297 89 71 36 chr9 126561441 126561497 -15709947 - MLT2A2 LTR ERVL 0 453 387 326 56 0 74 chr9 126561527 126561581 -15709863 - MLT2A2 LTR ERVL 0 453 404 394 86 40 0 chr9 126561587 126561653 -15709791 - MLT2A2 LTR ERVL 0 453 397 311 85 0 68 chr9 126561665 126561724 -15709720 - MLT2A2 LTR ERVL 0 453 399 3169 85 28 11 chr9 126561731 126562168 -15709276 - MLT2A1 LTR ERVL 0 444 1 3680 152 12 40 chr9 126562168 126562848 -15708596 + L1MB3 LINE L1 5522 6182 -1 184 286 63 79 chr9 126563166 126563292 -15708152 - L2 LINE L2 -184 3088 2965 495 110 330 0 chr9 126563618 126563718 -15707726 - L1PA14 LINE L1 -3 6158 6026 488 256 130 14 chr9 126564072 126564287 -15707157 + MIR SINE MIR 2 241 -21 2327 94 0 0 chr9 126564429 126564726 -15706718 + AluSx SINE Alu 1 297 -15 2253 121 0 0 chr9 126564740 126565037 -15706407 + AluSx SINE Alu 1 297 -15 206 244 0 78 chr9 126565243 126565333 -15706111 + MIR SINE MIR 18 100 -108 314 246 87 83 chr9 126565370 126565561 -15705883 + MIR SINE MIR 64 251 -11 204 40 0 0 chr9 126565924 126565949 -15705495 + (T)n Simple_repeat Simple_repeat 1 25 0 1470 199 0 34 chr9 126566139 126566431 -15705013 + AluJo SINE Alu 1 282 -30 307 263 67 98 chr9 126566793 126566987 -15704457 + MIR SINE MIR 64 251 -11 204 40 0 0 chr9 126567355 126567380 -15704064 + (T)n Simple_repeat Simple_repeat 1 25 0 1518 195 0 38 chr9 126567570 126567883 -15703561 + AluJo SINE Alu 1 301 -11 183 255 0 0 chr9 126567913 126567964 -15703480 - L2 LINE L2 -9 3263 3213 462 308 151 29 chr9 126569893 126570021 -15701423 - L2 LINE L2 -3 3269 3158 222 37 0 0 chr9 126570021 126570048 -15701396 + (GA)n Simple_repeat Simple_repeat 2 28 0 462 308 151 29 chr9 126570048 126570092 -15701352 - L2 LINE L2 -114 3158 3121 2272 119 0 0 chr9 126570092 126570395 -15701049 + AluSx SINE Alu 1 303 -9 462 308 151 29 chr9 126570395 126570533 -15700911 - L2 LINE L2 -151 3121 2920 255 217 349 0 chr9 126570688 126570771 -15700673 + MIR SINE MIR 30 141 -67 244 311 68 0 chr9 126571954 126572028 -15699416 + L2 LINE L2 3152 3230 -42 228 287 101 23 chr9 126573330 126573459 -15697985 - L2 LINE L2 -926 2388 2250 200 219 0 0 chr9 126574017 126574058 -15697386 - L3 LINE CR1 -238 1339 1299 260 290 58 52 chr9 126574111 126574266 -15697178 - L3 LINE CR1 -410 1167 1012 1241 204 67 3 chr9 126574276 126574560 -15696884 + MER33 DNA MER1_type 9 310 -14 2131 118 0 10 chr9 126574566 126574880 -15696564 - AluSx SINE Alu -1 311 1 492 326 133 49 chr9 126574925 126575370 -15696074 - L3 LINE CR1 -561 1016 535 227 140 20 0 chr9 126576062 126576112 -15695332 + (TG)n Simple_repeat Simple_repeat 2 52 0 257 125 75 138 chr9 126577263 126577343 -15694101 + MIR SINE MIR 77 151 -111 593 285 34 47 chr9 126577875 126578110 -15693334 - MLT1K LTR MaLR -11 577 346 251 297 33 0 chr9 126578218 126578309 -15693135 - MLT1K LTR MaLR -374 214 121 336 245 42 28 chr9 126579014 126579154 -15692290 - MIR SINE MIR -63 145 1 279 133 0 0 chr9 126579488 126579533 -15691911 + (TG)n Simple_repeat Simple_repeat 2 46 0 233 325 34 51 chr9 126580027 126580144 -15691300 - L2 LINE L2 -41 3231 3117 268 320 45 6 chr9 126580183 126580339 -15691105 - MIR SINE MIR -76 186 25 248 263 74 32 chr9 126580613 126580708 -15690736 + L2 LINE L2 3169 3267 -5 1084 126 5 107 chr9 126581248 126581454 -15689990 - AluSq SINE Alu -128 185 1 337 214 3 0 chr9 126581512 126581606 -15689838 - AluJ/FLAM SINE Alu -244 58 1 * 2239 118 84 62 chr9 126581606 126581918 -15689526 + Tigger2 DNA MER2_type 2302 2627 -91 2083 132 3 7 chr9 126581918 126582222 -15689222 - AluSp SINE Alu -10 303 1 2239 118 84 62 chr9 126582222 126582317 -15689127 + Tigger2 DNA MER2_type 2627 2718 0 180 0 0 0 chr9 126583987 126584007 -15687437 + (A)n Simple_repeat Simple_repeat 1 20 0 241 258 142 33 chr9 126584127 126584247 -15687197 - MIR SINE MIR -102 160 28 351 319 38 38 chr9 126584334 126584519 -15686925 - MIR SINE MIR -26 236 52 25 31 0 0 chr9 126584752 126584784 -15686660 + AT_rich Low_complexity Low_complexity 1 32 0 2297 86 3 3 chr9 126584810 126585112 -15686332 - AluY SINE Alu -9 302 1 1843 146 0 0 chr9 126585451 126585712 -15685732 - AluSx SINE Alu -27 285 25 312 243 118 44 chr9 126587205 126587341 -15684103 + MIR SINE MIR 45 190 -72 218 228 76 63 chr9 126587947 126588026 -15683418 - MIR3 SINE MIR -8 200 121 754 280 285 17 chr9 126588134 126588674 -15682770 - L2 LINE L2 -1026 2288 1604 299 317 189 12 chr9 126588694 126588858 -15682586 + MIR SINE MIR 56 248 -14 466 346 0 6 chr9 126589322 126589484 -15681960 - MIR3 SINE MIR -7 201 41 513 254 65 43 chr9 126589821 126590055 -15681389 + MIR SINE MIR 3 248 -14 414 313 42 14 chr9 126590474 126590618 -15680826 + MIR3 SINE MIR 15 162 -46 271 241 120 56 chr9 126591270 126591378 -15680066 + MIR SINE MIR 88 202 -60 918 190 68 34 chr9 126603174 126603379 -15668065 - MER58C DNA MER1_type -1 214 3 30 45 0 0 chr9 126603565 126603609 -15667835 + AT_rich Low_complexity Low_complexity 1 44 0 1344 203 0 0 chr9 126604138 126604374 -15667070 - AluJb SINE Alu -31 281 46 2237 79 34 0 chr9 126604492 126604783 -15666661 - AluSx SINE Alu -11 301 1 180 229 180 33 chr9 126604972 126605033 -15666411 + L2 LINE L2 3194 3263 -9 294 215 63 0 chr9 126605068 126605147 -15666297 - MIR SINE MIR -3 259 176 349 288 110 0 chr9 126605828 126605946 -15665498 - MER94 DNA DNA 0 134 4 242 291 35 23 chr9 126606245 126606331 -15665113 - MIR SINE MIR -88 174 88 2076 153 0 0 chr9 126606415 126606723 -15664721 + AluSx SINE Alu 1 308 -4 183 392 46 15 chr9 126607261 126607391 -15664053 - L2 LINE L2 -203 3069 2936 746 264 107 0 chr9 126608147 126608344 -15663100 - MIR SINE MIR -33 229 12 274 320 51 40 chr9 126608776 126608951 -15662493 - L2 LINE L2 -453 2861 2685 1319 165 7 63 chr9 126609705 126610008 -15661436 + AluJo SINE Alu 21 306 -6 1911 167 7 3 chr9 126610561 126610866 -15660578 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr9 126613694 126613724 -15657720 + AT_rich Low_complexity Low_complexity 1 30 0 240 59 0 0 chr9 126614615 126614649 -15656795 + (TG)n Simple_repeat Simple_repeat 1 34 0 323 213 18 124 chr9 126615467 126615636 -15655808 + L1ME4a LINE L1 5951 6101 -20 24 32 0 0 chr9 126616060 126616091 -15655353 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 126616333 126616354 -15655090 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 126619392 126619421 -15652023 + AT_rich Low_complexity Low_complexity 1 29 0 384 22 0 0 chr9 126621382 126621427 -15650017 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 126622482 126622503 -15648941 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr9 126623361 126623384 -15648060 + (A)n Simple_repeat Simple_repeat 1 23 0 322 295 92 12 chr9 126623804 126623977 -15647467 - MIR SINE MIR -1 261 75 229 235 0 86 chr9 126624019 126624100 -15647344 - L2 LINE L2 -79 3234 3161 204 250 0 0 chr9 126624504 126624544 -15646900 + MIR SINE MIR 223 262 0 237 354 165 0 chr9 126624991 126625155 -15646289 - MIR SINE MIR -41 221 31 2969 145 92 2 chr9 126625779 126626325 -15645119 - L1MB3 LINE L1 -1 6182 5588 487 99 0 25 chr9 126626811 126626892 -15644552 + (GGAGA)n Simple_repeat Simple_repeat 1 79 0 190 277 0 77 chr9 126627120 126627185 -15644259 + MIR SINE MIR 16 75 -133 752 280 71 34 chr9 126627195 126627434 -15644010 - L2 LINE L2 0 3313 3066 257 167 19 37 chr9 126627434 126627488 -15643956 + AluS SINE Alu 44 96 -206 279 279 139 6 chr9 126627527 126627699 -15643745 - L2 LINE L2 -292 3021 2827 722 255 60 47 chr9 126627851 126627954 -15643490 - L2 LINE L2 -1443 1871 1771 2029 127 0 19 chr9 126627954 126628270 -15643174 + AluSx SINE Alu 1 310 -2 722 255 60 47 chr9 126628270 126628464 -15642980 - L2 LINE L2 -1543 1771 1570 2141 115 3 6 chr9 126628580 126628892 -15642552 + AluSx SINE Alu 1 311 -1 523 141 41 116 chr9 126628950 126629047 -15642397 - MER63 DNA MER1_type -84 752 649 1541 151 55 19 chr9 126629047 126629338 -15642106 - AluJb SINE Alu 0 301 1 523 141 41 116 chr9 126629338 126629360 -15642084 - MER63 DNA MER1_type -187 649 15 373 302 59 53 chr9 126629362 126629382 -15642062 - L2 LINE L2 -1906 1408 1390 1830 166 0 7 chr9 126629382 126629689 -15641755 + AluJo SINE Alu 1 305 -7 373 302 59 53 chr9 126629689 126629837 -15641607 - L2 LINE L2 -1924 1390 1239 348 322 63 0 chr9 126629831 126629974 -15641470 + MIR SINE MIR 70 221 -41 * 264 286 7 19 chr9 126631245 126631399 -15640045 + T-rich Low_complexity Low_complexity 3 154 0 * 755 93 19 37 chr9 126631378 126631540 -15639904 + (TTCCC)n Simple_repeat Simple_repeat 2 160 0 698 165 26 0 chr9 126631551 126631666 -15639778 - FRAM SINE Alu -36 140 23 904 217 16 21 chr9 126633854 126634043 -15637401 + MIR SINE MIR 74 261 -1 275 259 0 0 chr9 126634663 126634744 -15636700 + (CA)n Simple_repeat Simple_repeat 2 82 0 1407 251 108 58 chr9 126634823 126635388 -15636056 - MLT1E LTR MaLR 0 593 1 2342 75 0 28 chr9 126635994 126636314 -15635130 + AluY SINE Alu 1 311 0 180 310 0 70 chr9 126636315 126636333 -15635111 - L3 LINE CR1 -937 640 622 1692 147 3 38 chr9 126636333 126636646 -15634798 + AluJb SINE Alu 5 306 -6 180 310 0 70 chr9 126636646 126636698 -15634746 - L3 LINE CR1 -955 622 575 258 286 0 0 chr9 126636746 126636809 -15634635 + MIR SINE MIR 91 153 -109 947 243 98 55 chr9 126636833 126637197 -15634247 + L1ME3 LINE L1 5593 6017 -147 1835 151 7 3 chr9 126637197 126637489 -15633955 + AluJb SINE Alu 1 293 -19 947 243 98 55 chr9 126637489 126637644 -15633800 + L1ME3 LINE L1 6017 6164 0 2206 76 24 0 chr9 126637653 126637941 -15633503 + AluY SINE Alu 1 295 -16 2104 100 34 0 chr9 126638622 126638913 -15632531 + AluSx SINE Alu 2 302 -10 362 193 7 73 chr9 126639027 126639161 -15632283 - MER58B DNA MER1_type 0 341 45 399 83 0 0 chr9 126639826 126639886 -15631558 + (CA)n Simple_repeat Simple_repeat 2 61 0 255 250 104 85 chr9 126639925 126640185 -15631259 + MLT1K LTR MaLR 166 430 -158 1834 191 50 17 chr9 126640647 126641004 -15630440 - MLT1A2 LTR MaLR -5 369 1 281 202 169 22 chr9 126641019 126641108 -15630336 - L2 LINE L2 -3 3269 3168 1990 139 0 3 chr9 126641230 126641532 -15629912 + AluSx SINE Alu 1 301 -11 242 328 127 53 chr9 126642043 126642342 -15629102 + L2 LINE L2 2910 3230 -42 2128 113 3 0 chr9 126642392 126642857 -15628587 + AluSp SINE Alu 1 466 0 690 137 7 33 chr9 126642704 126643030 -15628414 + GA-rich Low_complexity Low_complexity 1 322 0 2090 126 7 0 chr9 126643044 126643353 -15628091 + AluSx SINE Alu 1 311 -1 197 246 70 0 chr9 126643398 126643455 -15627989 + MER5A DNA MER1_type 128 188 -1 940 175 0 6 chr9 126643464 126643624 -15627820 - MER5B DNA MER1_type 0 178 20 468 0 0 0 chr9 126643635 126643687 -15627757 + (CA)n Simple_repeat Simple_repeat 2 53 0 301 229 130 53 chr9 126643740 126643871 -15627573 - MIR SINE MIR -58 204 64 243 125 0 0 chr9 126644456 126644496 -15626948 + (CA)n Simple_repeat Simple_repeat 2 41 0 211 184 0 0 chr9 126644659 126644697 -15626747 + GA-rich Low_complexity Low_complexity 2 39 0 278 297 145 7 chr9 126644697 126644842 -15626602 - MIR SINE MIR -38 224 60 670 133 20 0 chr9 126644842 126644940 -15626504 + AluS SINE Alu 2 101 -211 1862 150 0 10 chr9 126645166 126645295 -15626149 + AluJb SINE Alu 1 130 -182 297 0 0 0 chr9 126645295 126645328 -15626116 + (TA)n Simple_repeat Simple_repeat 1 33 0 1862 150 0 10 chr9 126645328 126645511 -15625933 + AluJb SINE Alu 130 310 -2 750 147 0 9 chr9 126645709 126645880 -15625564 - AluJb SINE Alu 0 340 171 718 111 0 0 chr9 126645977 126646076 -15625368 + AluSp/q SINE Alu 203 301 -12 237 293 13 0 chr9 126646236 126646311 -15625133 - HAL1 LINE L1 -358 2149 2074 1712 273 179 21 chr9 126646457 126646520 -15624924 - HAL1 LINE L1 -427 2080 2028 1807 128 28 17 chr9 126646520 126646809 -15624635 - AluSx SINE Alu -20 292 1 1712 273 179 21 chr9 126646809 126647830 -15623614 - HAL1 LINE L1 -479 2028 825 352 289 96 0 chr9 126648803 126648907 -15622537 - MIR SINE MIR -81 181 68 760 191 20 62 chr9 126648989 126649115 -15622329 + L1M4 LINE L1 5204 5323 -845 1802 162 0 0 chr9 126649115 126649418 -15622026 + AluJb SINE Alu 1 303 -9 760 191 20 62 chr9 126649418 126649512 -15621932 + L1M4 LINE L1 5323 5419 -749 1955 127 17 17 chr9 126649881 126650181 -15621263 - AluSx SINE Alu -12 300 1 1671 140 21 21 chr9 126650252 126650538 -15620906 - AluJb SINE Alu -26 286 1 320 246 33 33 chr9 126650544 126650666 -15620778 - L1MC5 LINE L1 -34 7927 7806 505 294 80 12 chr9 126650699 126650862 -15620582 - MIR SINE MIR -57 205 32 1809 137 7 46 chr9 126650871 126651177 -15620267 - AluSx SINE Alu -18 294 1 469 262 169 12 chr9 126651390 126651562 -15619882 + MIR SINE MIR 64 262 0 1936 98 58 0 chr9 126651735 126652011 -15619433 - AluSg SINE Alu -18 292 1 985 302 134 5 chr9 126652167 126652578 -15618866 + MLT1G1 LTR MaLR 132 595 0 314 257 69 0 chr9 126652579 126652680 -15618764 - MIR SINE MIR -118 144 37 1756 143 3 38 chr9 126652760 126653074 -15618370 + AluJo SINE Alu 1 303 -9 248 283 28 0 chr9 126653426 126653532 -15617912 + (TG)n Simple_repeat Simple_repeat 1 109 0 452 209 9 27 chr9 126653964 126654074 -15617370 - MIR3 SINE MIR -48 160 53 * 567 312 0 0 chr9 126654048 126654205 -15617239 - MIR3 SINE MIR -7 201 45 220 209 0 0 chr9 126654250 126654293 -15617151 + L2 LINE L2 3265 3307 -6 446 341 138 40 chr9 126654602 126655007 -15616437 + L2 LINE L2 2825 3269 -3 2063 120 3 0 chr9 126655563 126655864 -15615580 + AluSx SINE Alu 1 302 -10 2158 129 3 0 chr9 126656082 126656393 -15615051 + AluSx SINE Alu 1 312 0 3596 182 65 13 chr9 126656401 126657517 -15613927 + Charlie1a DNA MER1_type 95 1317 -1444 2000 119 17 0 chr9 126657517 126657811 -15613633 - AluSx SINE Alu -13 299 1 3596 182 65 13 chr9 126657811 126657958 -15613486 + Charlie1a DNA MER1_type 1317 1455 0 353 291 173 8 chr9 126657967 126658094 -15613350 - MIR SINE MIR -112 150 3 463 309 41 31 chr9 126658151 126658345 -15613099 - MIR SINE MIR -46 216 21 2349 69 10 3 chr9 126658588 126658891 -15612553 + AluSp SINE Alu 2 306 -7 1085 266 102 28 chr9 126659005 126659264 -15612180 - LTR16C LTR ERVL 0 491 192 1561 147 66 4 chr9 126659264 126659416 -15612028 - AluJb SINE Alu -22 290 149 282 56 0 0 chr9 126659416 126659452 -15611992 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1561 147 66 4 chr9 126659452 126659572 -15611872 - AluJb SINE Alu -163 149 1 1085 266 102 28 chr9 126659572 126659703 -15611741 - LTR16C LTR ERVL -299 192 72 293 307 59 0 chr9 126659783 126659884 -15611560 - L2 LINE L2 -1 3271 3165 467 263 45 8 chr9 126660281 126660414 -15611030 - MIR SINE MIR -48 214 77 209 323 32 0 chr9 126660473 126660566 -15610878 + GA-rich Low_complexity Low_complexity 2 97 0 279 257 30 10 chr9 126660987 126661088 -15610356 + (TCCA)n Simple_repeat Simple_repeat 1 103 0 381 321 78 42 chr9 126661092 126661285 -15610159 - L2 LINE L2 0 3272 3073 501 172 32 25 chr9 126661305 126661462 -15609982 + GA-rich Low_complexity Low_complexity 5 162 0 213 293 6 96 chr9 126661508 126661574 -15609870 - L2 LINE L2 -214 3058 2988 3839 140 21 81 chr9 126661574 126661607 -15609837 + L1MB2 LINE L1 5408 5441 -730 2000 117 0 4 chr9 126661607 126661888 -15609556 + AluSq SINE Alu 1 280 -33 204 40 0 0 chr9 126661888 126661913 -15609531 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3839 140 21 81 chr9 126661913 126662330 -15609114 + L1MB2 LINE L1 5440 5791 -380 1719 181 7 0 chr9 126662330 126662634 -15608810 + AluJb SINE Alu 1 306 -6 3839 140 21 81 chr9 126662634 126662994 -15608450 + L1MB2 LINE L1 5791 6171 0 213 293 6 96 chr9 126662994 126663084 -15608360 - L2 LINE L2 -284 2988 2916 201 313 45 15 chr9 126663315 126663382 -15608062 + MIR SINE MIR 119 187 -75 2449 57 0 0 chr9 126663406 126663706 -15607738 - AluY SINE Alu -11 300 1 1950 126 16 10 chr9 126663896 126664206 -15607238 - AluSx SINE Alu 0 312 1 471 271 72 59 chr9 126664294 126664688 -15606756 - MLT1H LTR MaLR 0 549 53 2059 112 0 3 chr9 126664951 126665246 -15606198 + AluSg SINE Alu 3 296 -14 345 314 59 0 chr9 126665418 126665536 -15605908 - MIR SINE MIR -70 192 68 322 290 129 26 chr9 126665599 126665754 -15605690 + MIR SINE MIR 91 261 -1 2909 215 44 28 chr9 126665807 126666481 -15604963 - L1MB7 LINE L1 -10 6174 5512 2147 115 0 0 chr9 126666481 126666786 -15604658 - AluSq SINE Alu -5 308 4 2909 215 44 28 chr9 126666786 126666833 -15604611 - L1MB7 LINE L1 -672 5512 5467 2021 129 0 16 chr9 126666833 126667144 -15604300 - AluSx SINE Alu -6 306 1 2909 215 44 28 chr9 126667144 126667234 -15604210 - L1MB7 LINE L1 -717 5467 5348 2367 82 0 0 chr9 126667915 126668210 -15603234 + AluY SINE Alu 1 298 -13 189 0 0 0 chr9 126668210 126668231 -15603213 + (CA)n Simple_repeat Simple_repeat 2 22 0 2218 101 3 0 chr9 126669024 126669331 -15602113 - AluSx SINE Alu -4 308 1 1167 133 0 22 chr9 126669418 126669652 -15601792 - AluSx SINE Alu 0 336 107 713 101 20 0 chr9 126669742 126669841 -15601603 - AluSx SINE Alu -210 102 2 443 219 89 8 chr9 126669842 126669965 -15601479 - MIR SINE MIR -110 152 20 251 296 80 0 chr9 126670271 126670359 -15601085 + MIR SINE MIR 20 114 -148 205 293 12 38 chr9 126670716 126670795 -15600649 + MIR SINE MIR 70 147 -61 851 240 15 5 chr9 126670831 126671027 -15600417 + MIR SINE MIR 42 239 -23 244 348 11 0 chr9 126671275 126671367 -15600077 - MIR SINE MIR -52 210 118 322 298 0 0 chr9 126671507 126671601 -15599843 + MER117 DNA MER1_type 75 168 -29 2078 109 0 23 chr9 126672306 126672608 -15598836 - AluSx SINE Alu -17 295 1 1587 148 8 4 chr9 126672681 126672937 -15598507 - AluJo SINE Alu -55 257 1 2168 156 16 26 chr9 126673012 126673391 -15598053 + THE1C LTR MaLR 1 375 0 1867 216 39 30 chr9 126673421 126673884 -15597560 - MLT1C LTR MaLR 0 467 1 21 57 0 0 chr9 126673885 126673920 -15597524 + AT_rich Low_complexity Low_complexity 1 35 0 1868 133 47 7 chr9 126674013 126674313 -15597131 + AluSx SINE Alu 1 312 0 1404 295 80 46 chr9 126674411 126674613 -15596831 - L1MC/D LINE L1 -744 5402 5208 1546 170 0 42 chr9 126674613 126674896 -15596548 - AluJb SINE Alu -12 300 30 1404 295 80 46 chr9 126674896 126675581 -15595863 - L1MC/D LINE L1 -938 5208 4548 2035 98 0 11 chr9 126675581 126675892 -15595552 + AluSq SINE Alu 1 308 0 1404 295 80 46 chr9 126675892 126676250 -15595194 - L1MC/D LINE L1 -1598 4548 4354 2103 77 3 42 chr9 126676250 126676560 -15594884 - AluY SINE Alu -13 298 1 1404 295 80 46 chr9 126676560 126676655 -15594789 - L1MC/D LINE L1 -1792 4354 4264 445 265 196 32 chr9 126676711 126676930 -15594514 + MIR SINE MIR 2 256 -6 2192 105 0 9 chr9 126677568 126677883 -15593561 + AluSx SINE Alu 1 312 0 184 256 23 0 chr9 126678008 126678051 -15593393 + L2 LINE L2 3220 3263 -9 1184 187 48 29 chr9 126679183 126679456 -15591988 + L1ME3 LINE L1 5598 5875 -287 1973 192 62 9 chr9 126679463 126679948 -15591496 - LTR27 LTR ERV1 -11 493 3 1095 234 19 11 chr9 126679967 126680228 -15591216 + L1ME3 LINE L1 5886 6148 -14 265 349 18 9 chr9 126680998 126681107 -15590337 - L3 LINE CR1 -114 1463 1354 452 269 0 10 chr9 126681132 126681236 -15590208 - MER81 DNA DNA -4 110 8 1992 116 7 0 chr9 126681302 126681596 -15589848 + AluSx SINE Alu 1 296 -16 220 208 0 21 chr9 126681803 126681851 -15589593 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 683 289 105 13 chr9 126681893 126682132 -15589312 + MIR SINE MIR 2 262 0 274 315 140 54 chr9 126682136 126682450 -15588994 - L2 LINE L2 0 3272 2932 354 323 68 47 chr9 126682577 126682706 -15588738 + L1MC4a LINE L1 3957 4082 -2064 2048 116 0 25 chr9 126682706 126683026 -15588418 - AluSq SINE Alu -1 312 1 354 323 68 47 chr9 126683026 126683185 -15588259 + L1MC4a LINE L1 4082 4236 -1910 1608 156 14 44 chr9 126683185 126683280 -15588164 + AluJo SINE Alu 1 97 -215 2271 72 13 3 chr9 126683280 126683584 -15587860 + AluY SINE Alu 1 307 -4 1608 156 14 44 chr9 126683584 126683783 -15587661 + AluJo SINE Alu 97 286 -26 354 323 68 47 chr9 126683783 126684004 -15587440 + L1MC4a LINE L1 4236 4478 -1668 454 316 24 72 chr9 126684055 126684305 -15587139 + L1MC4a LINE L1 4592 4829 -1317 2114 113 20 0 chr9 126684305 126684607 -15586837 + AluSx SINE Alu 1 308 -4 1664 226 35 35 chr9 126684615 126685076 -15586368 + MLT1C LTR MaLR 1 461 -6 265 323 37 24 chr9 126685093 126685257 -15586187 + L1MC4a LINE L1 4834 4999 -1147 2123 275 21 23 chr9 126685442 126686103 -15585341 + L1MC4a LINE L1 5268 5927 -1881 1637 168 3 7 chr9 126686111 126686402 -15585042 + AluJb SINE Alu 10 299 -13 315 0 0 0 chr9 126686402 126686437 -15585007 + (CA)n Simple_repeat Simple_repeat 2 36 0 376 270 126 0 chr9 126686691 126686802 -15584642 + MIR SINE MIR 48 172 -90 348 236 57 0 chr9 126686838 126686944 -15584500 + L1MC4 LINE L1 7931 8042 0 947 119 14 0 chr9 126687991 126688134 -15583310 + AluSg/x SINE Alu 166 310 -2 364 262 230 0 chr9 126688231 126688357 -15583087 + MIR SINE MIR 35 189 -73 717 229 105 0 chr9 126688619 126688772 -15582672 - FRAM SINE Alu -7 169 1 285 325 50 17 chr9 126688836 126688956 -15582488 - L2 LINE L2 -24 3248 3125 2184 85 0 31 chr9 126689026 126689345 -15582099 + AluY SINE Alu 1 309 -2 406 308 0 23 chr9 126689493 126689626 -15581818 + MIR SINE MIR 56 185 -77 2321 79 3 0 chr9 126689626 126689929 -15581515 + AluSp SINE Alu 2 305 -8 350 288 137 0 chr9 126690027 126690166 -15581278 + MIR SINE MIR 13 170 -92 210 71 0 0 chr9 126690246 126690274 -15581170 + (TG)n Simple_repeat Simple_repeat 2 29 0 343 220 80 34 chr9 126690292 126690415 -15581029 - MIR SINE MIR -53 155 28 211 290 71 54 chr9 126690903 126691033 -15580411 + MIR SINE MIR 20 149 -62 250 350 6 6 chr9 126691276 126691453 -15579991 + (CA)n Simple_repeat Simple_repeat 1 177 0 632 255 21 31 chr9 126692378 126692570 -15578874 - MIR SINE MIR -17 245 56 287 286 48 40 chr9 126693305 126693431 -15578013 + L2 LINE L2 2309 2435 -879 440 351 112 35 chr9 126693624 126694026 -15577418 + L2 LINE L2 2816 3248 -24 329 212 22 109 chr9 126694201 126694245 -15577199 + L1MC5 LINE L1 7789 7835 -126 2134 94 0 14 chr9 126694245 126694542 -15576902 + AluSg SINE Alu 1 293 -17 329 212 22 109 chr9 126694542 126694634 -15576810 + L1MC5 LINE L1 7835 7913 -48 310 263 167 9 chr9 126695159 126695273 -15576171 + MIR SINE MIR 79 210 -52 1685 135 0 0 chr9 126695535 126695779 -15575665 + AluSx SINE Alu 1 244 -68 350 288 59 0 chr9 126696307 126696425 -15575019 - MIR SINE MIR -58 204 80 2278 87 0 0 chr9 126696797 126697097 -15574347 - AluSc SINE Alu -9 300 1 257 229 45 56 chr9 126697166 126697345 -15574099 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 368 130 19 46 chr9 126697356 126697464 -15573980 + (TCTCTG)n Simple_repeat Simple_repeat 4 108 0 511 237 59 12 chr9 126698283 126698452 -15572992 + L1ME3 LINE L1 5972 6148 -14 204 67 0 0 chr9 126698522 126698552 -15572892 + (TG)n Simple_repeat Simple_repeat 1 30 0 401 311 68 22 chr9 126699019 126699246 -15572198 - MIR SINE MIR -7 255 21 296 24 24 0 chr9 126699535 126699576 -15571868 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 239 318 103 24 chr9 126699631 126699757 -15571687 + L2 LINE L2 3136 3271 -1 213 121 0 0 chr9 126699950 126699983 -15571461 + (T)n Simple_repeat Simple_repeat 1 33 0 1698 146 3 37 chr9 126700867 126701189 -15570255 - AluJo SINE Alu -1 311 1 1198 210 18 50 chr9 126701270 126701612 -15569832 + MER33 DNA MER1_type 1 318 -6 2229 105 0 3 chr9 126702208 126702521 -15568923 + AluSx SINE Alu 1 312 0 218 177 0 97 chr9 126703237 126703299 -15568145 - MIR SINE MIR -71 137 82 477 248 39 112 chr9 126703860 126703995 -15567449 - MIR SINE MIR -3 259 149 2075 100 0 14 chr9 126703995 126704315 -15567129 - AluSx SINE Alu 0 316 1 477 248 39 112 chr9 126704315 126704436 -15567008 - MIR SINE MIR -113 149 21 408 283 73 58 chr9 126704486 126704677 -15566767 + MIR3 SINE MIR 8 201 -7 1996 123 3 3 chr9 126705312 126705604 -15565840 - AluY SINE Alu -19 292 1 439 245 20 0 chr9 126705621 126705723 -15565721 - MIR SINE MIR -38 224 121 595 314 6 6 chr9 126705976 126706151 -15565293 + MIR3 SINE MIR 25 199 -9 260 240 0 0 chr9 126706201 126706251 -15565193 - MIR SINE MIR -65 143 94 491 229 83 38 chr9 126706394 126706551 -15564893 + MER103 DNA DNA 1 164 -2 2203 96 3 10 chr9 126706662 126706964 -15564480 - AluSx SINE Alu -12 300 1 324 195 85 24 chr9 126706976 126707058 -15564386 + L2 LINE L2 3186 3272 0 2087 124 0 3 chr9 126707139 126707437 -15564007 - AluSx SINE Alu -13 299 3 2395 58 3 13 chr9 126707675 126707984 -15563460 - AluY SINE Alu -5 306 1 452 298 0 30 chr9 126708258 126708389 -15563055 + MIR SINE MIR 28 154 -108 362 262 117 7 chr9 126708528 126708673 -15562771 - MIR SINE MIR -62 200 40 349 293 9 9 chr9 126708747 126708853 -15562591 + MIR SINE MIR 40 145 -63 289 301 34 34 chr9 126709044 126709190 -15562254 + MIR3 SINE MIR 2 147 -61 210 365 55 41 chr9 126709228 126709373 -15562071 + L2 LINE L2 3075 3221 -51 382 281 35 0 chr9 126709531 126709645 -15561799 - MIR SINE MIR -71 191 74 809 75 0 1 chr9 126709751 126709805 -15561639 - MER30 DNA MER1_type -37 193 140 189 0 0 0 chr9 126709805 126709826 -15561618 + (TTA)n Simple_repeat Simple_repeat 2 22 0 809 75 0 1 chr9 126709826 126709931 -15561513 - MER30 DNA MER1_type -90 140 1 183 310 148 14 chr9 126710543 126710685 -15560759 + MIR SINE MIR 36 196 -66 263 292 34 11 chr9 126710899 126710988 -15560456 - MIR SINE MIR -110 152 62 342 269 119 30 chr9 126712177 126712311 -15559133 - MIR SINE MIR -112 150 5 * 364 276 32 43 chr9 126712310 126712322 -15559122 - MIR SINE MIR 0 262 251 234 91 0 0 chr9 126712322 126712355 -15559089 + (CAG)n Simple_repeat Simple_repeat 2 34 0 364 276 32 43 chr9 126712355 126712527 -15558917 - MIR SINE MIR -11 251 80 214 327 127 0 chr9 126712734 126712844 -15558600 - MIR SINE MIR -74 188 65 344 308 17 64 chr9 126712935 126713107 -15558337 - MIR SINE MIR -92 170 7 854 134 0 0 chr9 126713416 126713565 -15557879 + MER53 DNA DNA 7 155 -34 425 206 22 0 chr9 126713675 126713767 -15557677 + MER53 DNA DNA 94 187 -2 345 280 23 23 chr9 126714263 126714438 -15557006 + GA-rich Low_complexity Low_complexity 1 175 0 227 294 0 0 chr9 126714593 126714644 -15556800 + G-rich Low_complexity Low_complexity 1 51 0 21 82 0 0 chr9 126715114 126715163 -15556281 + GC_rich Low_complexity Low_complexity 1 49 0 275 221 13 39 chr9 126715893 126715970 -15555474 + GA-rich Low_complexity Low_complexity 2 76 0 240 35 0 0 chr9 126716886 126716915 -15554529 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 266 78 0 39 chr9 126718388 126718439 -15553005 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 25 31 0 0 chr9 126720792 126720824 -15550620 + GC_rich Low_complexity Low_complexity 1 32 0 23 97 0 0 chr9 126720898 126720970 -15550474 + GC_rich Low_complexity Low_complexity 1 72 0 455 116 0 23 chr9 126721373 126721459 -15549985 + (GGA)n Simple_repeat Simple_repeat 2 85 0 243 364 0 0 chr9 126721657 126721767 -15549677 + G-rich Low_complexity Low_complexity 1 110 0 552 274 100 17 chr9 126722182 126722423 -15549021 + MIR SINE MIR 2 262 0 270 0 0 0 chr9 126725534 126725564 -15545880 + (TG)n Simple_repeat Simple_repeat 2 31 0 194 0 39 0 chr9 126728135 126728161 -15543283 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 23 33 0 0 chr9 126728713 126728743 -15542701 + AT_rich Low_complexity Low_complexity 1 30 0 249 33 0 0 chr9 126730166 126730196 -15541248 + (GA)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr9 126730706 126730729 -15540715 + (CA)n Simple_repeat Simple_repeat 2 24 0 235 201 21 98 chr9 126732951 126733145 -15538299 + G-rich Low_complexity Low_complexity 2 180 0 21 89 0 0 chr9 126733179 126733235 -15538209 + GC_rich Low_complexity Low_complexity 1 56 0 23 86 0 0 chr9 126733305 126733363 -15538081 + GC_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr9 126733388 126733410 -15538034 + GC_rich Low_complexity Low_complexity 1 22 0 215 114 23 0 chr9 126733444 126733488 -15537956 + G-rich Low_complexity Low_complexity 1 45 0 253 256 22 22 chr9 126733496 126733633 -15537811 + C-rich Low_complexity Low_complexity 2 138 0 326 323 0 37 chr9 126733666 126733830 -15537614 + CT-rich Low_complexity Low_complexity 3 160 0 242 233 41 0 chr9 126733903 126733976 -15537468 + MIR SINE MIR 70 145 -63 298 342 68 0 chr9 126734488 126734605 -15536839 + MIR SINE MIR 90 214 -48 471 327 128 23 chr9 126734614 126735051 -15536393 - L2 LINE L2 -18 3295 2813 185 162 0 0 chr9 126735397 126735434 -15536010 - L2 LINE L2 -23 3249 3213 293 274 8 51 chr9 126735544 126735661 -15535783 + L2 LINE L2 3197 3308 -5 301 316 53 21 chr9 126735821 126736008 -15535436 - MIR SINE MIR -35 227 35 2069 129 0 10 chr9 126737477 126737786 -15533658 + AluSx SINE Alu 1 306 -6 2161 124 3 0 chr9 126737794 126738148 -15533296 + AluSx SINE Alu 5 359 0 822 134 13 47 chr9 126738910 126739059 -15532385 + FRAM SINE Alu 21 164 -12 575 238 20 7 chr9 126739078 126739229 -15532215 + MIR SINE MIR 105 257 -5 242 324 222 4 chr9 126739235 126739460 -15531984 - L2 LINE L2 -81 3191 2918 1232 259 91 16 chr9 126739676 126740116 -15531328 + MLT1K LTR MaLR 2 474 -2 243 321 38 23 chr9 126740138 126740269 -15531175 - L2 LINE L2 -573 2741 2609 1445 221 59 68 chr9 126740324 126740472 -15530972 - MLT1C LTR MaLR 0 467 319 1984 113 0 61 chr9 126740472 126740800 -15530644 - AluSq SINE Alu -5 308 1 1445 221 59 68 chr9 126740800 126741122 -15530322 - MLT1C LTR MaLR -148 319 1 691 334 156 23 chr9 126741260 126741861 -15529583 + L3 LINE CR1 63 743 -834 332 281 12 108 chr9 126741874 126742041 -15529403 - L2 LINE L2 -25 3247 3097 343 203 235 7 chr9 126742303 126742464 -15528980 - MIR SINE MIR -41 167 33 308 366 84 10 chr9 126742674 126742876 -15528568 - L1ME4a LINE L1 -1 6120 5904 1727 176 27 0 chr9 126742912 126743213 -15528231 + AluJb SINE Alu 1 309 -3 281 323 34 27 chr9 126743214 126743263 -15528181 - L1ME4a LINE L1 -446 5796 5749 1859 155 0 37 chr9 126743263 126743440 -15528004 - AluJb SINE Alu -2 310 149 2232 62 0 45 chr9 126743440 126743748 -15527696 - AluY SINE Alu -17 294 1 1859 155 0 37 chr9 126743748 126743892 -15527552 - AluJb SINE Alu -163 149 1 281 323 34 27 chr9 126743892 126744027 -15527417 - L1ME4a LINE L1 -493 5749 5690 882 127 0 0 chr9 126744778 126744904 -15526540 + AluJb SINE Alu 1 126 -186 889 298 123 12 chr9 126745409 126745825 -15525619 - L2 LINE L2 0 3313 2852 2223 105 0 3 chr9 126745864 126746170 -15525274 - AluSx SINE Alu -7 305 1 206 239 0 0 chr9 126746235 126746281 -15525163 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 * 218 179 0 0 chr9 126746254 126746293 -15525151 + (CAGT)n Simple_repeat Simple_repeat 4 42 0 433 326 22 62 chr9 126746314 126746538 -15524906 - L2 LINE L2 -51 3221 3007 250 196 36 0 chr9 126746537 126746593 -15524851 + L2 LINE L2 3210 3267 -5 * 819 277 10 10 chr9 126746817 126747019 -15524425 + MLT1I LTR MaLR 1 202 -207 258 203 17 0 chr9 126747074 126747133 -15524311 + MLT1I LTR MaLR 347 406 -3 347 266 119 28 chr9 126747430 126747573 -15523871 - L2 LINE L2 0 3313 3158 1557 135 120 11 chr9 126747768 126748034 -15523410 + AluSg SINE Alu 1 295 -15 624 251 43 26 chr9 126748175 126748409 -15523035 + MIR SINE MIR 23 262 0 206 318 126 13 chr9 126748946 126749097 -15522347 - MIR SINE MIR -9 253 86 230 327 50 10 chr9 126749323 126749424 -15522020 + L2 LINE L2 3070 3174 -98 253 371 35 0 chr9 126749586 126749729 -15521715 - MIR SINE MIR -21 241 94 368 256 0 0 chr9 126749784 126749866 -15521578 - L2 LINE L2 0 3272 3191 264 120 0 0 chr9 126749878 126749928 -15521516 + (TG)n Simple_repeat Simple_repeat 1 50 0 260 360 26 9 chr9 126750400 126750514 -15520930 + MIR SINE MIR 33 148 -60 362 296 101 12 chr9 126750944 126751113 -15520331 + MIR SINE MIR 69 252 -10 3171 181 30 5 chr9 126751207 126751782 -15519662 - L1MB3 LINE L1 -1 6182 5594 479 297 108 9 chr9 126752261 126752473 -15518971 + MIR SINE MIR 15 247 -15 222 247 35 47 chr9 126752948 126753033 -15518411 - MIR SINE MIR -74 188 105 195 238 0 79 chr9 126753089 126753152 -15518292 - L2 LINE L2 -21 3251 3194 2528 103 24 8 chr9 126753182 126753551 -15517893 + THE1C LTR MaLR 1 375 0 216 395 0 0 chr9 126753982 126754091 -15517353 - L3 LINE CR1 -675 902 794 332 281 12 108 chr9 126754095 126754262 -15517182 + L2 LINE L2 3097 3247 -25 691 334 156 23 chr9 126754275 126754876 -15516568 - L3 LINE CR1 -834 743 63 1445 221 59 68 chr9 126755014 126755336 -15516108 + MLT1C LTR MaLR 1 319 -148 1984 113 0 61 chr9 126755336 126755664 -15515780 + AluSq SINE Alu 1 308 -5 1445 221 59 68 chr9 126755664 126755812 -15515632 + MLT1C LTR MaLR 319 467 0 241 321 38 23 chr9 126755867 126755998 -15515446 + L2 LINE L2 2609 2741 -573 1232 259 91 16 chr9 126756020 126756460 -15514984 - MLT1K LTR MaLR -2 474 2 202 239 43 65 chr9 126756676 126756768 -15514676 + L2 LINE L2 2918 3007 -265 1861 133 42 0 chr9 126757485 126757771 -15513673 - AluJb SINE Alu -13 299 2 603 206 123 7 chr9 126757934 126758089 -15513355 - MIR SINE MIR -17 245 73 277 292 103 9 chr9 126758137 126758364 -15513080 - MIR3 SINE MIR -12 250 1 345 340 46 21 chr9 126758734 126758975 -15512469 + L2 LINE L2 2625 2871 -443 263 241 4 0 chr9 126758977 126759222 -15512222 + (CA)n Simple_repeat Simple_repeat 1 246 0 449 268 0 19 chr9 126759279 126759674 -15511770 + (CA)n Simple_repeat Simple_repeat 1 387 0 428 224 47 18 chr9 126759686 126759856 -15511588 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 * 466 289 0 0 chr9 126759751 126759931 -15511513 + (CA)n Simple_repeat Simple_repeat 1 180 0 455 275 0 6 chr9 126759962 126760133 -15511311 + (CA)n Simple_repeat Simple_repeat 1 170 0 315 247 0 0 chr9 126760159 126760333 -15511111 + (CA)n Simple_repeat Simple_repeat 1 174 0 230 137 0 63 chr9 126760391 126760486 -15510958 + (CTCA)n Simple_repeat Simple_repeat 4 92 0 281 240 4 4 chr9 126760489 126760733 -15510711 + (CA)n Simple_repeat Simple_repeat 1 244 0 189 268 0 0 chr9 126760759 126760897 -15510547 + (CA)n Simple_repeat Simple_repeat 1 138 0 239 178 30 30 chr9 126760945 126761080 -15510364 + (CTCA)n Simple_repeat Simple_repeat 4 138 0 460 307 0 0 chr9 126761087 126761263 -15510181 + (CA)n Simple_repeat Simple_repeat 1 176 0 507 304 60 75 chr9 126761307 126761722 -15509722 + L2 LINE L2 2864 3272 0 291 304 11 11 chr9 126762059 126762151 -15509293 + GA-rich Low_complexity Low_complexity 2 93 0 324 161 0 0 chr9 126762174 126762236 -15509208 + G-rich Low_complexity Low_complexity 1 62 0 911 95 24 0 chr9 126763044 126763170 -15508274 + AluSq/x SINE Alu 1 129 -183 2304 139 9 13 chr9 126763199 126763617 -15507827 + L1MB3 LINE L1 5268 5687 -496 2053 140 7 0 chr9 126763617 126763924 -15507520 + AluSx SINE Alu 1 309 -3 359 143 0 14 chr9 126763924 126763994 -15507450 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 2180 116 3 0 chr9 126763995 126764306 -15507138 + AluSx SINE Alu 1 312 0 3080 132 31 2 chr9 126764306 126764791 -15506653 + L1MB3 LINE L1 5676 6174 -9 2046 110 3 7 chr9 126764791 126765081 -15506363 - AluSx SINE Alu -23 289 1 504 228 44 33 chr9 126765106 126765286 -15506158 - L1M4 LINE L1 -1461 4685 4504 767 264 126 43 chr9 126765418 126765744 -15505700 + MLT1H LTR MaLR 189 541 -8 230 310 150 0 chr9 126765872 126765985 -15505459 + L2 LINE L2 3138 3267 -5 252 266 25 51 chr9 126766228 126766307 -15505137 + MIR SINE MIR 2 78 -184 1983 124 7 16 chr9 126766357 126766664 -15504780 + AluJb SINE Alu 1 304 -8 764 276 73 11 chr9 126766792 126767067 -15504377 + MER46C DNA MER2_type 20 311 -27 211 200 0 0 chr9 126767069 126767109 -15504335 - MIR SINE MIR -42 220 181 274 250 68 45 chr9 126767148 126767280 -15504164 - L2 LINE L2 -213 3059 2925 2025 69 4 29 chr9 126767314 126767589 -15503855 + AluSc SINE Alu 25 292 -17 273 305 126 0 chr9 126767828 126767923 -15503521 - L3 LINE CR1 -1125 452 346 2143 121 3 0 chr9 126768575 126768882 -15502562 - AluSp SINE Alu -5 308 1 390 292 114 82 chr9 126768882 126768913 -15502531 - L1ME4a LINE L1 -145 5976 5947 2010 141 0 3 chr9 126768913 126769211 -15502233 - AluSx SINE Alu -15 297 1 390 292 114 82 chr9 126769211 126769460 -15501984 - L1ME4a LINE L1 -174 5947 5687 233 283 215 37 chr9 126769461 126769573 -15501871 + MIR SINE MIR 15 149 -59 2361 70 0 13 chr9 126769575 126769890 -15501554 + AluY SINE Alu 1 311 0 1974 120 0 0 chr9 126769958 126770233 -15501211 + AluSx SINE Alu 13 287 -25 222 225 88 38 chr9 126770647 126770727 -15500717 + MIR SINE MIR 133 216 -46 620 289 147 5 chr9 126771153 126771371 -15500073 + MIR SINE MIR 12 260 -2 216 329 70 19 chr9 126771378 126771536 -15499908 - MIR SINE MIR -83 179 14 1503 126 159 7 chr9 126771573 126771844 -15499600 - AluSx SINE Alu 0 312 1 186 310 0 31 chr9 126772472 126772546 -15498898 - MIR SINE MIR -133 75 2 285 279 96 29 chr9 126772547 126772651 -15498793 + L2 LINE L2 3162 3272 0 340 244 244 0 chr9 126773212 126773343 -15498101 + MIR SINE MIR 33 195 -67 1011 309 18 21 chr9 126773407 126773795 -15497649 - MLT1I LTR MaLR 0 409 23 525 247 89 17 chr9 126773810 126774003 -15497441 - MIR SINE MIR -12 250 47 310 274 145 17 chr9 126774154 126774271 -15497173 - MIR3 SINE MIR -74 134 3 711 232 79 11 chr9 126774329 126774506 -15496938 + MIR SINE MIR 9 197 -65 1619 166 0 58 chr9 126774604 126774917 -15496527 - AluJo SINE Alu -17 295 1 1568 192 16 6 chr9 126774930 126775243 -15496201 - L1MD3 LINE L1 -11 7984 7669 357 220 170 10 chr9 126775246 126775346 -15496098 - MIR SINE MIR -131 131 16 2094 109 0 3 chr9 126776137 126776431 -15495013 + AluSx SINE Alu 1 293 -19 2097 106 0 3 chr9 126776458 126776751 -15494693 + AluSx SINE Alu 5 296 -16 1786 154 7 7 chr9 126776768 126777066 -15494378 - AluJo SINE Alu -14 298 1 557 221 103 103 chr9 126777219 126777361 -15494083 + MIR SINE MIR 2 146 -116 2356 78 0 3 chr9 126777361 126777667 -15493777 - AluY SINE Alu -6 305 1 557 221 103 103 chr9 126777667 126777719 -15493725 + MIR SINE MIR 145 196 -66 347 263 86 40 chr9 126777984 126778136 -15493308 - MER112 DNA MER1_type -101 159 1 238 350 43 18 chr9 126778339 126778403 -15493041 - MIR SINE MIR -37 225 164 878 178 61 17 chr9 126778403 126778583 -15492861 + MER5A DNA MER1_type 2 189 0 238 350 43 18 chr9 126778583 126778681 -15492763 - MIR SINE MIR -98 164 59 2171 104 3 0 chr9 126778681 126778980 -15492464 - AluSx SINE Alu -12 300 1 250 365 95 15 chr9 126779015 126779152 -15492292 + L2 LINE L2 3121 3268 -4 836 271 140 19 chr9 126780108 126780473 -15490971 - LTR33 LTR ERVL 0 521 113 2090 107 7 7 chr9 126780807 126781107 -15490337 + AluSx SINE Alu 1 300 -12 708 277 133 32 chr9 126781668 126782007 -15489437 + L2 LINE L2 2855 3227 -86 2628 145 28 28 chr9 126782040 126782452 -15488992 - L1MB5 LINE L1 0 6174 5760 1822 164 0 3 chr9 126782452 126782756 -15488688 - AluJb SINE Alu -9 303 1 2628 145 28 28 chr9 126782756 126782840 -15488604 - L1MB5 LINE L1 -413 5761 5678 394 114 0 133 chr9 126782840 126782945 -15488499 + LTR9 LTR ERV1 438 528 -84 508 183 0 0 chr9 126782955 126783048 -15488396 - L1MB5 LINE L1 -482 5692 5600 1460 167 35 14 chr9 126783107 126783394 -15488050 - AluJo SINE Alu -7 305 13 2075 116 0 3 chr9 126783437 126783729 -15487715 + AluSq SINE Alu 1 291 -22 27 0 0 0 chr9 126783729 126783756 -15487688 + AT_rich Low_complexity Low_complexity 1 27 0 189 244 0 22 chr9 126783918 126783963 -15487481 + L2 LINE L2 3250 3293 -20 507 291 12 17 chr9 126783966 126784138 -15487306 - L1ME LINE L1 -396 5725 5555 251 175 133 92 chr9 126784860 126784925 -15486519 - MIR SINE MIR -21 241 180 1883 134 14 7 chr9 126784925 126785215 -15486229 - AluSx SINE Alu -20 292 1 251 175 133 92 chr9 126785215 126785269 -15486175 - MIR SINE MIR -82 180 117 463 335 98 10 chr9 126785487 126785690 -15485754 + MIR SINE MIR 16 236 -26 519 200 10 0 chr9 126785749 126785849 -15485595 + MIR SINE MIR 98 198 -64 2185 105 0 7 chr9 126785863 126786169 -15485275 + AluSx SINE Alu 1 304 -8 1668 161 13 13 chr9 126786190 126786495 -15484949 - AluJb SINE Alu -7 305 1 506 67 13 0 chr9 126786647 126786722 -15484722 + (TG)n Simple_repeat Simple_repeat 1 76 0 183 182 45 0 chr9 126786830 126786874 -15484570 + L2 LINE L2 2935 2980 -292 545 215 107 51 chr9 126787159 126787445 -15483999 + MER39 LTR ERV1 1 529 -178 976 90 0 0 chr9 126787451 126787585 -15483859 - AluSc SINE Alu -44 265 132 2141 89 0 7 chr9 126787585 126787901 -15483543 - AluY SINE Alu 0 311 1 427 235 50 0 chr9 126787901 126788020 -15483424 + MER39 LTR ERV1 583 707 0 347 288 86 59 chr9 126788062 126788151 -15483293 + L2 LINE L2 3080 3165 -148 3559 49 0 7 chr9 126788151 126788596 -15482848 - L1PA5 LINE L1 -1 6153 5712 347 288 86 59 chr9 126788596 126788728 -15482716 + L2 LINE L2 3165 3307 -6 1528 162 6 88 chr9 126788803 126789320 -15482124 - AluJo SINE Alu 0 312 1 34 0 0 0 chr9 126789410 126789444 -15482000 + AT_rich Low_complexity Low_complexity 1 34 0 1461 184 0 26 chr9 126789447 126789718 -15481726 - AluJb SINE Alu -48 264 1 251 256 188 92 chr9 126790449 126790656 -15480788 - MIR SINE MIR -32 230 4 201 39 0 0 chr9 126790813 126790839 -15480605 + (TTTC)n Simple_repeat Simple_repeat 4 29 0 1961 141 0 10 chr9 126790842 126791147 -15480297 - AluSx SINE Alu -7 305 4 318 115 0 0 chr9 126791208 126791260 -15480184 + (TG)n Simple_repeat Simple_repeat 1 52 0 303 28 0 0 chr9 126791389 126791425 -15480019 + (CA)n Simple_repeat Simple_repeat 2 37 0 248 344 0 22 chr9 126791916 126792006 -15479438 - MIR SINE MIR -173 89 2 516 261 43 12 chr9 126792095 126792256 -15479188 - MIR SINE MIR -60 202 37 2055 108 0 14 chr9 126792432 126792748 -15478696 - AluSq SINE Alu 0 312 1 227 266 96 11 chr9 126793103 126793197 -15478247 - MIR SINE MIR -1 261 160 375 43 0 0 chr9 126793198 126793245 -15478199 - MADE1 DNA Mariner -1 79 33 2041 121 0 0 chr9 126793353 126793643 -15477801 + AluSx SINE Alu 3 292 -20 229 255 98 69 chr9 126794168 126794270 -15477174 + L2 LINE L2 3161 3265 -7 338 308 89 27 chr9 126794579 126794725 -15476719 - MER5A DNA MER1_type 0 189 35 306 319 69 28 chr9 126794603 126794747 -15476697 + MER5A DNA MER1_type 37 186 -3 * 710 234 178 0 chr9 126794832 126795046 -15476398 - MIR SINE MIR -1 261 10 2043 120 0 0 chr9 126795084 126795396 -15476048 + AluSx SINE Alu 1 312 0 387 0 0 0 chr9 126795757 126795800 -15475644 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 1508 161 0 27 chr9 126795807 126796068 -15475376 - AluJo SINE Alu -46 266 13 2417 98 48 25 chr9 126796170 126796526 -15474918 + THE1B LTR MaLR 1 364 0 5333 136 22 42 chr9 126796663 126797906 -15473538 + L1MB3 LINE L1 4961 6181 -2 291 385 39 0 chr9 126798046 126798176 -15473268 - L2 LINE L2 -2 3311 3177 402 223 190 8 chr9 126798236 126798357 -15473087 - MIR SINE MIR -91 171 29 1976 91 20 40 chr9 126798389 126798686 -15472758 + AluSc SINE Alu 5 295 -14 342 136 0 15 chr9 126798704 126798770 -15472674 + L1MB8 LINE L1 6102 6166 -12 346 281 134 82 chr9 126799220 126799327 -15472117 - MIR3 SINE MIR -8 200 79 1563 260 52 42 chr9 126799327 126799831 -15471613 + MLT1J LTR MaLR 3 511 0 346 281 134 82 chr9 126799831 126799894 -15471550 - MIR3 SINE MIR -129 79 21 806 191 0 12 chr9 126799925 126800087 -15471357 - FAM SINE Alu -15 170 11 2237 82 0 13 chr9 126800099 126800402 -15471042 - AluY SINE Alu -12 299 1 1985 107 7 20 chr9 126800402 126800702 -15470742 - AluSx SINE Alu -16 296 1 21 0 0 0 chr9 126800712 126800733 -15470711 + AT_rich Low_complexity Low_complexity 1 21 0 1069 241 12 36 chr9 126800775 126801028 -15470416 - MIR SINE MIR -13 249 3 423 283 49 21 chr9 126801032 126801201 -15470243 - MIR3 SINE MIR -63 145 4 396 0 0 0 chr9 126801257 126801301 -15470143 + (CA)n Simple_repeat Simple_repeat 2 45 0 192 77 0 0 chr9 126801894 126801920 -15469524 + (A)n Simple_repeat Simple_repeat 1 26 0 357 281 214 22 chr9 126801991 126802169 -15469275 + MIR SINE MIR 32 243 -19 24 53 0 0 chr9 126802877 126802915 -15468529 + GC_rich Low_complexity Low_complexity 1 38 0 261 231 0 33 chr9 126802945 126803036 -15468408 + (CGG)n Simple_repeat Simple_repeat 2 89 0 28 61 0 0 chr9 126803167 126803216 -15468228 + GC_rich Low_complexity Low_complexity 1 49 0 217 115 19 19 chr9 126803260 126803312 -15468132 + (CCGGG)n Simple_repeat Simple_repeat 4 55 0 22 70 0 0 chr9 126803418 126803461 -15467983 + GC_rich Low_complexity Low_complexity 1 43 0 233 271 57 0 chr9 126804821 126804891 -15466553 - MIR SINE MIR -146 116 43 369 328 134 10 chr9 126805467 126805668 -15465776 + MIR SINE MIR 34 259 -3 235 353 25 8 chr9 126805973 126806092 -15465352 - MIR SINE MIR -18 244 124 249 339 89 55 chr9 126806155 126806391 -15465053 + L2 LINE L2 3025 3268 -4 1967 113 7 19 chr9 126806550 126806860 -15464584 - AluSp SINE Alu -7 306 1 253 200 0 0 chr9 126807516 126807561 -15463883 - L2 LINE L2 -38 3234 3190 211 0 88 0 chr9 126807639 126807673 -15463771 + A-rich Low_complexity Low_complexity 1 37 0 887 277 119 17 chr9 126807949 126808392 -15463052 - L2 LINE L2 -36 3277 2785 2683 166 82 21 chr9 126808450 126808477 -15462967 - L1MB7 LINE L1 -25 6159 6135 1825 108 65 0 chr9 126808477 126808754 -15462690 - AluSg SINE Alu -15 295 1 2683 166 82 21 chr9 126808754 126809300 -15462144 - L1MB7 LINE L1 -49 6135 5551 187 300 0 0 chr9 126810387 126810437 -15461007 - L2 LINE L2 -338 2976 2927 257 276 20 31 chr9 126810515 126810613 -15460831 - L2 LINE L2 -550 2764 2668 242 321 64 36 chr9 126810864 126810907 -15460537 - L2 LINE L2 -723 2591 2551 1887 140 0 37 chr9 126810907 126811228 -15460216 + AluJb SINE Alu 1 309 -3 242 321 64 36 chr9 126811228 126811324 -15460120 - L2 LINE L2 -763 2551 2448 1819 150 0 42 chr9 126812268 126812575 -15458869 + AluSx SINE Alu 1 294 -18 22 56 0 0 chr9 126812619 126812655 -15458789 + AT_rich Low_complexity Low_complexity 1 36 0 1886 128 10 3 chr9 126812695 126812992 -15458452 - AluSq SINE Alu -14 299 1 2645 237 100 87 chr9 126813044 126813237 -15458207 - L1MC5 LINE L1 -31 7930 7741 2091 128 0 0 chr9 126813237 126813541 -15457903 - AluSx SINE Alu -8 304 1 2645 237 100 87 chr9 126813541 126813651 -15457793 - L1MC5 LINE L1 -220 7741 7634 2066 133 0 0 chr9 126813651 126813951 -15457493 - AluSx SINE Alu -12 300 1 2645 237 100 87 chr9 126813951 126814629 -15456815 - L1MC5 LINE L1 -327 7634 6966 2428 66 0 0 chr9 126814629 126814934 -15456510 - AluY SINE Alu -6 305 1 2645 237 100 87 chr9 126814934 126814989 -15456455 - L1MC5 LINE L1 -995 6966 6913 2136 94 0 14 chr9 126814989 126815312 -15456132 - AluY SINE Alu 0 311 1 2645 237 100 87 chr9 126815312 126815927 -15455517 - L1MC5 LINE L1 -1048 6913 6307 1767 160 20 0 chr9 126815927 126816233 -15455211 - AluSx SINE Alu 0 312 1 2645 237 100 87 chr9 126816233 126816468 -15454976 - L1MC5 LINE L1 -1654 6307 6076 2353 80 0 0 chr9 126816468 126816769 -15454675 + AluSp SINE Alu 1 301 -12 2645 237 100 87 chr9 126816769 126817281 -15454163 - L1MC5 LINE L1 -1885 6076 5460 428 297 92 54 chr9 126817293 126817627 -15453817 - HAL1b LINE L1 -12 2495 752 2333 124 54 56 chr9 126818203 126818573 -15452871 + MSTB LTR MaLR 1 371 -55 2268 77 0 23 chr9 126818573 126818883 -15452561 - AluY SINE Alu -7 304 2 2333 124 54 56 chr9 126818883 126818939 -15452505 + MSTB LTR MaLR 371 426 0 2231 71 27 3 chr9 126819223 126819517 -15451927 - AluSp SINE Alu -12 301 1 506 263 44 70 chr9 126819732 126820002 -15451442 - HAL1 LINE L1 -697 1810 1548 2762 227 79 29 chr9 126820019 126820918 -15450526 - L1MDa LINE L1 -5521 1019 76 1331 223 32 20 chr9 126820979 126821147 -15450297 - L1ME3 LINE L1 -14 6148 5983 2343 69 7 13 chr9 126821147 126821452 -15449992 + AluY SINE Alu 1 303 -8 1331 223 32 20 chr9 126821452 126821628 -15449816 - L1ME3 LINE L1 -179 5983 5800 3169 231 74 32 chr9 126821631 126822181 -15449263 - L1ME3 LINE L1 -427 5735 5210 2083 139 0 10 chr9 126822181 126822483 -15448961 - AluSx SINE Alu -13 299 1 3169 231 74 32 chr9 126822483 126823712 -15447732 - L1ME3 LINE L1 -952 5210 3876 226 42 125 0 chr9 126823719 126823767 -15447677 + T-rich Low_complexity Low_complexity 2 55 0 40381 34 26 2 chr9 126823775 126829770 -15441674 - L1PA2 LINE L1 0 6155 13 664 222 54 21 chr9 126829771 126829782 -15441662 - L1ME3 LINE L1 -2259 3887 3878 2826 13 0 0 chr9 126829782 126830090 -15441354 - AluYa5 SINE Alu -3 308 1 664 222 54 21 chr9 126830090 126830317 -15441127 - L1ME3 LINE L1 -2268 3878 3641 471 35 0 0 chr9 126830922 126830979 -15440465 + (TG)n Simple_repeat Simple_repeat 1 57 0 2210 90 0 7 chr9 126831108 126831398 -15440046 - AluY SINE Alu -3 308 21 672 304 37 4 chr9 126831841 126832084 -15439360 + L2 LINE L2 2556 2806 -508 501 191 61 23 chr9 126832204 126832335 -15439109 - MIR SINE MIR -56 206 71 395 283 168 12 chr9 126832348 126832521 -15438923 - MIR SINE MIR -56 206 7 407 357 98 38 chr9 126832584 126832850 -15438594 + L2 LINE L2 2985 3266 -6 215 196 0 22 chr9 126833941 126833987 -15437457 + L2 LINE L2 3217 3261 -11 778 164 92 80 chr9 126834336 126834521 -15436923 + L1ME LINE L1 5089 5270 -896 1703 173 34 0 chr9 126834521 126834816 -15436628 + AluJo SINE Alu 1 305 -7 778 164 92 80 chr9 126834816 126835038 -15436406 + L1ME LINE L1 5270 5482 -684 26 0 0 0 chr9 126835105 126835131 -15436313 + AT_rich Low_complexity Low_complexity 1 26 0 1425 181 105 0 chr9 126835178 126835454 -15435990 - AluJo SINE Alu -7 305 1 580 302 75 22 chr9 126836346 126836799 -15434645 - L1MEd LINE L1 -5105 1100 624 213 65 0 0 chr9 126836799 126836830 -15434614 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1304 172 66 51 chr9 126836834 126837107 -15434337 - AluJo SINE Alu -35 277 1 2229 135 0 3 chr9 126837490 126837802 -15433642 - AluSx SINE Alu -1 311 1 934 203 0 0 chr9 126837918 126838081 -15433363 + FAM SINE Alu 11 173 -12 305 266 53 21 chr9 126838950 126839044 -15432400 - L2 LINE L2 -1 3271 3175 357 197 0 0 chr9 126839213 126839274 -15432170 - L2 LINE L2 -1 3312 3252 479 311 43 24 chr9 126839331 126839540 -15431904 + MIR SINE MIR 15 227 -35 633 236 96 6 chr9 126839829 126839986 -15431458 + MIR SINE MIR 5 175 -87 1002 133 0 18 chr9 126840117 126840129 -15431315 - L1PA8 LINE L1 0 6172 6161 1995 130 0 0 chr9 126840129 126840414 -15431030 - AluSx SINE Alu 0 312 28 1002 133 0 18 chr9 126840414 126840567 -15430877 - L1PA8 LINE L1 -11 6161 6010 499 190 74 8 chr9 126840601 126840722 -15430722 - L1MEd LINE L1 -6166 230 102 * 2124 242 19 47 chr9 126840719 126841405 -15430039 - L1MEc LINE L1 -5684 712 46 21 0 0 0 chr9 126841493 126841514 -15429930 + AT_rich Low_complexity Low_complexity 1 21 0 303 326 111 15 chr9 126841639 126841774 -15429670 + MER5A DNA MER1_type 12 159 -30 337 261 0 0 chr9 126842187 126842275 -15429169 + L1ME2 LINE L1 6059 6146 -18 1088 238 17 17 chr9 126842336 126842571 -15428873 + MIR SINE MIR 18 252 -10 2196 114 0 3 chr9 126843151 126843450 -15427994 - AluSq SINE Alu -15 298 1 361 285 97 27 chr9 126843801 126843996 -15427448 - MIR SINE MIR -50 212 9 459 0 0 0 chr9 126844133 126844184 -15427260 + (CA)n Simple_repeat Simple_repeat 2 52 0 1868 218 163 6 chr9 126844201 126845279 -15426165 - L1MC4 LINE L1 -109 7699 6546 2083 122 14 0 chr9 126847063 126847359 -15424085 + AluSx SINE Alu 1 300 -12 263 206 320 0 chr9 126847714 126847811 -15423633 - L2 LINE L2 -4 3268 3141 775 172 113 0 chr9 126847838 126847989 -15423455 - MER5B DNA MER1_type 0 178 11 411 118 0 0 chr9 126848067 126848143 -15423301 + (TG)n Simple_repeat Simple_repeat 1 76 0 554 249 154 9 chr9 126848274 126848495 -15422949 + MIR SINE MIR 1 253 -9 704 201 122 6 chr9 126849554 126849718 -15421726 + MER5A DNA MER1_type 3 185 -4 695 287 95 16 chr9 126849785 126850224 -15421220 - L2 LINE L2 -1 3271 2780 450 240 40 0 chr9 126850247 126850372 -15421072 - L1MB3 LINE L1 0 6183 6054 2464 234 147 31 chr9 126850375 126850800 -15420644 - L2 LINE L2 -532 2782 2408 655 192 64 0 chr9 126850800 126850925 -15420519 - FLAM_A SINE Alu 0 133 1 2464 234 147 31 chr9 126850925 126851389 -15420055 - L2 LINE L2 -906 2408 1790 22 70 0 0 chr9 126851500 126851543 -15419901 + AT_rich Low_complexity Low_complexity 1 43 0 281 261 130 31 chr9 126852197 126852358 -15419086 - MER104 DNA Tc2 0 180 4 269 289 41 50 chr9 126852391 126852512 -15418932 + MIR SINE MIR 77 196 -66 2061 101 47 4 chr9 126852840 126853118 -15418326 + AluSx SINE Alu 1 290 -22 243 318 47 98 chr9 126853531 126853566 -15417878 - MIR SINE MIR -24 238 203 189 0 0 0 chr9 126853566 126853587 -15417857 + (TG)n Simple_repeat Simple_repeat 2 22 0 243 318 47 98 chr9 126853587 126853603 -15417841 - MIR SINE MIR -59 203 188 1970 157 0 0 chr9 126853603 126853890 -15417554 - AluJo SINE Alu -25 287 1 243 318 47 98 chr9 126853890 126854073 -15417371 - MIR SINE MIR -74 188 15 1708 77 5 0 chr9 126854923 126855132 -15416312 - AluSp SINE Alu -16 297 88 2157 124 7 0 chr9 126855293 126855599 -15415845 - AluSq SINE Alu -5 308 1 2234 94 3 16 chr9 126855628 126855936 -15415508 - AluSg SINE Alu -6 304 1 3119 115 78 0 chr9 126855940 126856443 -15415001 - L1PB4 LINE L1 0 6156 5615 1547 235 58 76 chr9 126856463 126857105 -15414339 - L1MC4 LINE L1 -31 8011 7382 1292 274 25 33 chr9 126857221 126857835 -15413609 + MER115 DNA AcHobo 21 693 0 964 275 129 15 chr9 126857966 126858486 -15412958 - L1ME3A LINE L1 -221 5949 5371 788 179 7 0 chr9 126858496 126858636 -15412808 - FRAM SINE Alu -11 165 25 299 285 140 13 chr9 126858658 126858886 -15412558 - L1ME3A LINE L1 -766 5380 5124 720 183 15 0 chr9 126858942 126859073 -15412371 - FLAM_C SINE Alu -10 133 1 2322 102 0 0 chr9 126859100 126859393 -15412051 + AluSg SINE Alu 1 293 -17 232 217 50 0 chr9 126860803 126860863 -15410581 - L1ME LINE L1 -376 5745 5683 1724 183 3 3 chr9 126861757 126862041 -15409403 + AluJb SINE Alu 1 284 -28 383 251 204 0 chr9 126862224 126862391 -15409053 - MIR SINE MIR -3 259 59 2376 97 0 0 chr9 126862406 126862704 -15408740 + AluSc SINE Alu 1 298 -11 1191 133 0 0 chr9 126862704 126862870 -15408574 + AluSg/x SINE Alu 134 299 -13 1898 136 29 39 chr9 126863113 126863422 -15408022 - AluJb SINE Alu -6 306 1 365 245 69 10 chr9 126863824 126863926 -15407518 + L2 LINE L2 3202 3309 -4 207 228 211 0 chr9 126863938 126863995 -15407449 - MIR SINE MIR -157 105 37 321 240 224 0 chr9 126864592 126864717 -15406727 + MIR SINE MIR 110 262 0 1509 305 44 19 chr9 126864980 126865553 -15405891 - MLT1K LTR MaLR 0 588 2 443 330 95 23 chr9 126866237 126866458 -15404986 + MIR SINE MIR 6 242 -20 567 237 30 98 chr9 126867264 126867500 -15403944 + MIR SINE MIR 15 234 -28 600 227 17 0 chr9 126868167 126868286 -15403158 + L2 LINE L2 3193 3313 0 497 287 58 23 chr9 126868826 126869000 -15402444 + MIR SINE MIR 47 226 -36 26 0 0 0 chr9 126871025 126871051 -15400393 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr9 126871379 126871401 -15400043 + AT_rich Low_complexity Low_complexity 1 22 0 220 226 35 148 chr9 126871938 126872053 -15399391 + L3 LINE CR1 1459 1560 -17 403 351 76 18 chr9 126873023 126873299 -15398145 + L2 LINE L2 2571 2862 -452 209 205 0 0 chr9 126873549 126873588 -15397856 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 359 301 78 0 chr9 126873594 126873697 -15397747 + MIR SINE MIR 36 146 -62 234 341 152 0 chr9 126874576 126874708 -15396736 + L2 LINE L2 2348 2499 -815 1915 205 119 44 chr9 126874794 126875052 -15396392 - L1MC4 LINE L1 -128 7914 7677 2601 58 0 0 chr9 126875052 126875363 -15396081 - AluY SINE Alu 0 311 1 1915 205 119 44 chr9 126875363 126875734 -15395710 - L1MC4 LINE L1 -365 7677 7238 1065 237 35 34 chr9 126875735 126876282 -15395162 - L1MC4 LINE L1 -896 6912 6452 374 357 65 32 chr9 126877025 126877089 -15394355 + L2 LINE L2 2565 2625 -647 2348 82 3 0 chr9 126877089 126877383 -15394061 - AluSp SINE Alu -16 297 3 374 357 65 32 chr9 126877383 126877785 -15393659 + L2 LINE L2 2625 3060 -212 2321 109 3 0 chr9 126878405 126878728 -15392716 - AluSx SINE Alu 0 324 1 2095 123 0 0 chr9 126879463 126879755 -15391689 - AluSx SINE Alu -15 297 6 2174 114 7 0 chr9 126879925 126880224 -15391220 - AluSx SINE Alu -11 301 1 276 292 29 22 chr9 126880227 126880364 -15391080 - L1ME LINE L1 -461 5660 5523 271 308 47 9 chr9 126880433 126880540 -15390904 + MARNA DNA Mariner 464 574 -12 324 302 0 28 chr9 126881545 126881651 -15389793 + MIR SINE MIR 8 110 -152 1714 155 3 30 chr9 126881666 126881970 -15389474 + AluJb SINE Alu 1 296 -16 24 32 0 0 chr9 126882297 126882328 -15389116 + AT_rich Low_complexity Low_complexity 1 31 0 342 271 112 83 chr9 126884566 126884708 -15386736 + L1ME3A LINE L1 4961 5097 -1049 1669 155 10 44 chr9 126884708 126885005 -15386439 + AluJo SINE Alu 1 287 -25 342 271 112 83 chr9 126885005 126885176 -15386268 + L1ME3A LINE L1 5097 5283 -863 339 333 63 39 chr9 126885191 126885398 -15386046 + L1ME3A LINE L1 5320 5531 -633 272 291 46 75 chr9 126885402 126885791 -15385653 + L1ME3A LINE L1 5579 5956 -214 764 197 7 7 chr9 126885928 126886070 -15385374 + Tigger3(Golem) DNA MER2_type 2888 3029 0 2332 94 0 0 chr9 126886193 126886492 -15384952 - AluY SINE Alu -12 299 1 310 280 72 92 chr9 126886501 126886708 -15384736 - L1MC/D LINE L1 -2167 5641 5439 2391 90 0 0 chr9 126886911 126887210 -15384234 + AluSq SINE Alu 1 299 -14 705 169 103 0 chr9 126887258 126887394 -15384050 - MER30 DNA MER1_type 0 230 81 944 132 0 7 chr9 126887395 126887539 -15383905 - FLAM_C SINE Alu 0 143 1 1773 134 7 14 chr9 126887996 126888271 -15383173 + AluSx SINE Alu 1 273 -39 268 263 331 0 chr9 126888507 126888640 -15382804 - MIR3 SINE MIR -2 206 30 600 193 193 54 chr9 126889265 126889336 -15382108 + MER5A DNA MER1_type 1 61 -128 1647 149 8 4 chr9 126889336 126889584 -15381860 + AluJo SINE Alu 50 298 -14 600 193 193 54 chr9 126889584 126889678 -15381766 + MER5A DNA MER1_type 61 189 0 300 200 15 0 chr9 126889744 126889809 -15381635 - AluSp/q SINE Alu -21 282 217 309 260 290 0 chr9 126889913 126890013 -15381431 + MER5A DNA MER1_type 61 189 0 2239 117 0 13 chr9 126890043 126890360 -15381084 - AluSq SINE Alu 0 313 1 435 319 120 37 chr9 126890360 126890576 -15380868 + MIR SINE MIR 20 253 -9 217 161 0 71 chr9 126890646 126890702 -15380742 - L2 LINE L2 -4 3268 3217 186 282 47 47 chr9 126890881 126890966 -15380478 - L2 LINE L2 -158 3114 3030 355 258 0 0 chr9 126891346 126891443 -15380001 - L1ME LINE L1 -449 5672 5576 476 257 19 9 chr9 126891512 126891617 -15379827 - L2 LINE L2 -36 3277 3172 478 150 88 0 chr9 126891623 126891703 -15379741 + Tigger4(Zombi) DNA MER2_type 1 87 -2644 281 130 0 0 chr9 126891700 126891746 -15379698 + Tigger4(Zombi) DNA MER2_type 2295 2340 -391 * 2140 97 3 3 chr9 126891747 126892036 -15379408 + AluSx SINE Alu 1 289 -23 2015 112 28 0 chr9 126892056 126892341 -15379103 + AluSx SINE Alu 1 293 -19 2195 90 64 36 chr9 126892357 126892573 -15378871 + Tigger4(Zombi) DNA MER2_type 2333 2566 -165 2064 141 0 0 chr9 126892573 126892864 -15378580 + AluSx SINE Alu 6 296 -16 2195 90 64 36 chr9 126892864 126893035 -15378409 + Tigger4(Zombi) DNA MER2_type 2566 2731 0 2614 258 232 22 chr9 126893036 126893917 -15377527 - L2 LINE L2 -157 3156 2461 2377 120 11 22 chr9 126893917 126894285 -15377159 - THE1B LTR MaLR 0 364 1 2614 258 232 22 chr9 126894285 126895004 -15376440 - L2 LINE L2 -852 2461 1216 21 0 0 0 chr9 126895221 126895242 -15376202 + AT_rich Low_complexity Low_complexity 1 21 0 2212 125 0 10 chr9 126895242 126895554 -15375890 + AluSg SINE Alu 1 309 -1 230 256 11 33 chr9 126896643 126896733 -15374711 - MLT1-int LTR MaLR -489 882 795 1238 181 78 40 chr9 126897041 126897389 -15374055 + L1ME1 LINE L1 5758 6118 -48 318 248 60 45 chr9 126897453 126897586 -15373858 - L1MEc LINE L1 -4153 2243 2109 1119 252 0 0 chr9 126897657 126897887 -15373557 - MIR SINE MIR -21 241 12 12321 122 61 43 chr9 126897887 126900203 -15371241 - Tigger1 DNA MER2_type 0 2418 61 252 0 0 0 chr9 126900203 126900231 -15371213 + (T)n Simple_repeat Simple_repeat 1 28 0 2214 129 3 0 chr9 126900496 126900807 -15370637 - AluSx SINE Alu 0 312 1 395 293 32 16 chr9 126901128 126901316 -15370128 - L1MEc LINE L1 -4974 1231 1041 389 178 14 0 chr9 126901319 126901392 -15370052 + AluJ/FLAM SINE Alu 1 74 -228 520 240 25 0 chr9 126901515 126901636 -15369808 + FLAM_C SINE Alu 1 124 -19 24 0 0 0 chr9 126901666 126901690 -15369754 + AT_rich Low_complexity Low_complexity 1 24 0 4854 210 43 29 chr9 126901786 126902884 -15368560 - L1MB4 LINE L1 -18 6162 5081 186 43 0 0 chr9 126902884 126902907 -15368537 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 4854 210 43 29 chr9 126902907 126902959 -15368485 - L1MB4 LINE L1 -1099 5081 5031 1619 202 16 32 chr9 126902959 126903271 -15368173 - AluJb SINE Alu -5 307 1 4854 210 43 29 chr9 126903271 126903416 -15368028 - L1MB4 LINE L1 -1149 5031 4889 2030 146 0 3 chr9 126903416 126903717 -15367727 - AluSx SINE Alu -12 300 1 4854 210 43 29 chr9 126903717 126904765 -15366679 - L1MB4 LINE L1 -1291 4889 3812 1577 207 101 7 chr9 126905727 126906171 -15365273 - L1MB4 LINE L1 -2318 3828 3343 247 95 71 0 chr9 126906193 126906235 -15365209 - U7 snRNA snRNA -17 46 2 233 365 213 14 chr9 126906343 126906625 -15364819 + L2 LINE L2 2935 3272 0 331 352 104 21 chr9 126906651 126906938 -15364506 + L2 LINE L2 2298 2608 -706 287 325 120 75 chr9 126906935 126907227 -15364217 + L2 LINE L2 2967 3271 -1 * 186 196 36 18 chr9 126908010 126908066 -15363378 - L2 LINE L2 -38 3234 3178 200 352 65 0 chr9 126908071 126908179 -15363265 - MIR SINE MIR -19 243 129 311 149 45 0 chr9 126910261 126910328 -15361116 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 457 301 20 20 chr9 126910390 126910536 -15360908 - MIR SINE MIR -109 153 8 197 308 116 55 chr9 126910620 126910766 -15360678 + MIR SINE MIR 46 200 -62 388 322 45 40 chr9 126911507 126911709 -15359735 + MIR SINE MIR 50 252 -10 22 0 0 0 chr9 126911902 126911924 -15359520 + AT_rich Low_complexity Low_complexity 1 22 0 195 341 143 0 chr9 126912599 126912725 -15358719 - MIR SINE MIR 0 262 119 186 43 0 0 chr9 126912975 126912998 -15358446 + (T)n Simple_repeat Simple_repeat 1 23 0 287 309 0 71 chr9 126913855 126913981 -15357463 + L2 LINE L2 3171 3287 -26 24 67 0 0 chr9 126914820 126914865 -15356579 + AT_rich Low_complexity Low_complexity 1 45 0 330 308 138 28 chr9 126915292 126915620 -15355824 - L2 LINE L2 -188 3084 2729 429 308 102 47 chr9 126917571 126917801 -15353643 - MIR SINE MIR -6 256 2 228 350 7 49 chr9 126917914 126918057 -15353387 - MIR3 SINE MIR -24 184 48 290 239 45 0 chr9 126918941 126919029 -15352415 - L1ME4a LINE L1 -199 5922 5831 29 28 0 0 chr9 126920065 126920101 -15351343 + AT_rich Low_complexity Low_complexity 1 36 0 1152 176 60 0 chr9 126920533 126920749 -15350695 + MER46A DNA MER2_type 8 236 0 22 0 0 0 chr9 126920818 126920840 -15350604 + AT_rich Low_complexity Low_complexity 1 22 0 353 268 74 42 chr9 126921181 126921371 -15350073 - L1ME3A LINE L1 -208 5962 5767 382 275 66 78 chr9 126921377 126921635 -15349809 - L1ME3A LINE L1 -344 5826 5572 269 290 25 9 chr9 126921602 126921756 -15349688 - L1ME3A LINE L1 -565 5599 5497 * 2386 95 0 0 chr9 126922115 126922410 -15349034 + AluSq SINE Alu 1 295 -18 376 292 133 3 chr9 126922672 126923035 -15348409 + L1ME4a LINE L1 5518 5946 -175 357 296 132 7 chr9 126923333 126923485 -15347959 + MIR SINE MIR 31 201 -61 2232 133 0 0 chr9 126923503 126923811 -15347633 - AluSq SINE Alu -5 308 1 2021 141 14 0 chr9 126923817 126924133 -15347311 - AluSx SINE Alu 0 325 6 204 280 0 0 chr9 126926219 126926269 -15345175 + L2 LINE L2 3263 3312 -1 251 299 155 46 chr9 126926530 126926704 -15344740 + MIR SINE MIR 21 213 -49 383 162 68 0 chr9 126927143 126927217 -15344227 - L1PA11 LINE L1 0 6174 6096 351 0 0 0 chr9 126928965 126929004 -15342440 + (CA)n Simple_repeat Simple_repeat 2 40 0 1896 146 29 4 chr9 126929960 126930235 -15341209 + AluJo SINE Alu 1 282 -30 294 286 208 7 chr9 126930531 126930685 -15340759 + MIR3 SINE MIR 16 200 -8 2227 126 0 19 chr9 126931422 126931731 -15339713 - AluSx SINE Alu -9 303 1 263 275 152 36 chr9 126931990 126932128 -15339316 + MIR SINE MIR 21 174 -88 271 348 85 7 chr9 126932375 126932516 -15338928 + MIR SINE MIR 51 202 -60 29 0 0 0 chr9 126932586 126932615 -15338829 + AT_rich Low_complexity Low_complexity 1 29 0 218 282 87 29 chr9 126932702 126932805 -15338639 - MIR SINE MIR -44 218 110 780 216 55 17 chr9 126933031 126933212 -15338232 - MER5A DNA MER1_type 0 189 2 554 221 103 103 chr9 126933895 126933947 -15337497 - MIR SINE MIR -66 196 145 2505 78 0 3 chr9 126933947 126934253 -15337191 + AluY SINE Alu 1 305 -6 554 221 103 103 chr9 126934253 126934395 -15337049 - MIR SINE MIR -116 146 2 812 254 24 20 chr9 126934548 126934796 -15336648 + AluJo SINE Alu 1 249 -63 481 273 8 0 chr9 126934800 126934928 -15336516 + AluY SINE Alu 156 284 -27 268 235 148 13 chr9 126934986 126935135 -15336309 + L1MC4 LINE L1 7665 7833 -209 792 63 0 0 chr9 126935328 126935439 -15336005 + (TCCCC)n Simple_repeat Simple_repeat 2 112 0 1119 179 0 0 chr9 126935455 126935628 -15335816 - AluSg/x SINE Alu -40 272 100 276 275 133 8 chr9 126935702 126935822 -15335622 + L2 LINE L2 3165 3299 -14 1922 140 43 10 chr9 126935999 126936417 -15335027 - AluSx SINE Alu 0 430 3 243 0 0 0 chr9 126936673 126936700 -15334744 + (TTATG)n Simple_repeat Simple_repeat 2 28 0 2415 84 3 0 chr9 126936948 126937245 -15334199 + AluSp SINE Alu 1 298 -15 279 114 0 0 chr9 126937758 126937802 -15333642 + (CA)n Simple_repeat Simple_repeat 1 44 0 454 278 26 20 chr9 126938172 126938323 -15333121 - MIR SINE MIR -79 183 32 443 314 128 10 chr9 126938495 126938634 -15332810 - MIR SINE MIR -1 261 89 2069 128 3 7 chr9 126938634 126938924 -15332520 + AluSx SINE Alu 1 289 -23 443 314 128 10 chr9 126938924 126938988 -15332456 - MIR SINE MIR -173 89 34 452 351 63 34 chr9 126939675 126939785 -15331659 - MIR SINE MIR -11 251 146 2733 95 3 14 chr9 126939785 126940153 -15331291 + THE1B LTR MaLR 1 364 0 452 351 63 34 chr9 126940153 126940281 -15331163 - MIR SINE MIR -116 146 6 486 270 54 56 chr9 126940850 126941100 -15330344 - MIR SINE MIR 0 262 16 2551 80 0 0 chr9 126941619 126941930 -15329514 + AluY SINE Alu 1 311 0 421 338 42 42 chr9 126942261 126942498 -15328946 + L2 LINE L2 2854 3090 -182 749 228 24 53 chr9 126943218 126943424 -15328020 + MIR SINE MIR 50 249 -13 325 179 214 51 chr9 126944472 126944589 -15326855 + MER5C DNA MER1_type 20 155 -169 2490 153 66 6 chr9 126944609 126945039 -15326405 + L1MB3 LINE L1 5683 6086 -97 1732 84 0 5 chr9 126945039 126945252 -15326192 + AluSg SINE Alu 1 212 -98 4265 109 0 0 chr9 126945252 126945849 -15325595 + L1PA14 LINE L1 5564 6160 -1 2490 153 66 6 chr9 126945849 126945888 -15325556 + L1MB3 LINE L1 6085 6181 -2 2124 213 87 13 chr9 126945919 126946458 -15324986 - L1ME1 LINE L1 -5 6161 5583 419 227 53 15 chr9 126946511 126946643 -15324801 + MER5C DNA MER1_type 187 323 -1 331 296 289 28 chr9 126946673 126947102 -15324342 - L2 LINE L2 -338 2976 2436 1036 250 156 9 chr9 126947598 126948046 -15323398 + LTR33 LTR ERVL 8 521 0 2042 163 0 3 chr9 126948707 126949014 -15322430 + AluSx SINE Alu 1 306 -6 309 337 66 61 chr9 126949146 126949588 -15321856 + L1MC4a LINE L1 5255 5698 -2110 321 62 46 5 chr9 126949608 126949672 -15321772 - MADE1 DNA Mariner -37 43 1 408 246 33 135 chr9 126949679 126949775 -15321669 + L1MC4a LINE L1 5732 5836 -1972 2307 120 3 0 chr9 126949775 126950084 -15321360 + AluSx SINE Alu 1 310 -2 408 246 33 135 chr9 126950084 126950231 -15321213 + L1MC4a LINE L1 5836 5950 -1858 2356 103 0 0 chr9 126950269 126950571 -15320873 + AluSx SINE Alu 11 312 0 421 175 10 41 chr9 126950725 126950794 -15320650 - LTR40b LTR ERVL -368 94 27 1740 201 24 29 chr9 126950794 126951168 -15320276 - MLT1A2 LTR MaLR -2 372 1 421 175 10 41 chr9 126951168 126951195 -15320249 - LTR40b LTR ERVL -435 27 1 1663 188 20 20 chr9 126951289 126951646 -15319798 + LTR40b LTR ERVL 106 462 0 1043 248 100 25 chr9 126951646 126952102 -15319342 + MLT1F1 LTR MaLR 67 567 0 291 170 0 0 chr9 126952256 126952303 -15319141 + Alu SINE Alu 1 47 -254 1090 123 50 14 chr9 126952575 126952888 -15318556 + THE1C LTR MaLR 1 375 0 294 73 0 0 chr9 126953153 126953194 -15318250 + (CA)n Simple_repeat Simple_repeat 2 42 0 761 288 0 10 chr9 126953402 126953600 -15317844 + MIR SINE MIR 46 241 -21 309 179 116 53 chr9 126953643 126953738 -15317706 - L1MC5 LINE L1 -26 7935 7835 330 207 166 103 chr9 126955304 126955409 -15316035 + MIR SINE MIR 30 148 -114 2345 113 0 0 chr9 126955409 126955720 -15315724 + AluSx SINE Alu 1 311 -1 330 207 166 103 chr9 126955720 126955759 -15315685 + MIR SINE MIR 148 183 -79 440 207 43 43 chr9 126955820 126955936 -15315508 + L2 LINE L2 3197 3312 -1 340 328 44 22 chr9 126956469 126956652 -15314792 - MIR3 SINE MIR -8 200 14 249 316 0 25 chr9 126956674 126956753 -15314691 + GA-rich Low_complexity Low_complexity 5 81 0 384 291 102 41 chr9 126956764 126956960 -15314484 - MIR SINE MIR -25 237 30 2180 92 28 3 chr9 126957049 126957332 -15314112 + AluSx SINE Alu 1 290 -22 180 0 0 0 chr9 126957336 126957356 -15314088 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 553 264 10 82 chr9 126958038 126958246 -15313198 - MIR3 SINE MIR -2 206 14 2335 101 0 3 chr9 126958802 126959109 -15312335 + AluSx SINE Alu 1 306 -6 717 76 0 0 chr9 126960614 126960719 -15310725 + (TTTAG)n Simple_repeat Simple_repeat 3 107 0 1881 132 3 51 chr9 126960719 126961015 -15310429 - AluSx SINE Alu -30 282 1 2420 103 3 3 chr9 126961388 126961699 -15309745 - AluSx SINE Alu -1 311 1 296 355 66 0 chr9 126962229 126962381 -15309063 - MIR SINE MIR -1 261 100 2048 143 0 0 chr9 126962381 126962675 -15308769 + AluSx SINE Alu 1 294 -18 626 268 41 16 chr9 126962793 126962987 -15308457 + MIR SINE MIR 28 226 -36 1848 151 3 46 chr9 126963106 126963252 -15308192 + AluJb SINE Alu 1 152 -160 2361 88 7 0 chr9 126963252 126963547 -15307897 + AluY SINE Alu 1 297 -14 1848 151 3 46 chr9 126963547 126963724 -15307720 + AluJb SINE Alu 152 310 -2 414 100 0 0 chr9 126964460 126964520 -15306924 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1769 128 25 56 chr9 126964520 126964839 -15306605 - AluSx SINE Alu -3 309 1 21 71 0 0 chr9 126964848 126964890 -15306554 + AT_rich Low_complexity Low_complexity 1 42 0 362 294 77 29 chr9 126964891 126965061 -15306383 - L1ME4a LINE L1 -9 6112 5935 614 174 11 33 chr9 126965061 126965245 -15306199 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 * 861 194 0 0 chr9 126965217 126965397 -15306047 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 303 254 30 85 chr9 126965527 126965692 -15305752 - L1ME3 LINE L1 -46 6116 5961 335 238 127 111 chr9 126965781 126965855 -15305589 - L1MC5 LINE L1 -430 7531 7460 2311 105 0 0 chr9 126965855 126966151 -15305293 + AluSx SINE Alu 1 296 -16 335 238 127 111 chr9 126966151 126966257 -15305187 - L1MC5 LINE L1 -501 7460 7348 3868 121 17 28 chr9 126966976 126967569 -15303875 - MER39B LTR ERV1 -1 652 65 2187 112 3 10 chr9 126967569 126967873 -15303571 + AluSx SINE Alu 10 311 -1 3868 121 17 28 chr9 126967873 126967932 -15303512 - MER39B LTR ERV1 -588 65 7 834 149 0 8 chr9 126967973 126968107 -15303337 + FLAM_C SINE Alu 1 133 0 367 264 71 14 chr9 126968180 126968320 -15303124 + LTR16C LTR ERVL 344 491 0 627 140 11 0 chr9 126968762 126968887 -15302557 - AluSq SINE Alu 0 328 203 2144 110 0 0 chr9 126968888 126969190 -15302254 + AluSg SINE Alu 1 302 0 1613 128 0 0 chr9 126969190 126969408 -15302036 - AluSq SINE Alu -95 218 1 1932 118 0 4 chr9 126969411 126969708 -15301736 - AluSx SINE Alu 0 309 14 2402 98 0 13 chr9 126969710 126970027 -15301417 - AluSq SINE Alu 0 313 1 368 290 102 54 chr9 126970124 126970205 -15301239 + L1MC/D LINE L1 5285 5361 -2447 3686 132 69 23 chr9 126970205 126970695 -15300749 + MER41B LTR ERV1 1 467 -168 2198 127 0 6 chr9 126970695 126971010 -15300434 - AluSq SINE Alu 0 313 1 2315 108 0 0 chr9 126971011 126971306 -15300138 - AluSq SINE Alu -18 295 1 3686 132 69 23 chr9 126971306 126971420 -15300024 + MER41B LTR ERV1 466 635 0 368 290 102 54 chr9 126971420 126971463 -15299981 + L1MC/D LINE L1 5361 5400 -2408 2316 107 0 0 chr9 126971463 126971761 -15299683 + AluSx SINE Alu 1 298 -14 368 290 102 54 chr9 126971761 126971821 -15299623 + L1MC/D LINE L1 5400 5479 -2329 702 176 59 0 chr9 126971868 126971987 -15299457 - FLAM_A SINE Alu -6 127 2 402 266 98 0 chr9 126972023 126972149 -15299295 + MLT1J LTR MaLR 45 145 -305 1354 173 111 72 chr9 126972149 126972582 -15298862 + LTR7 LTR ERV1 1 450 0 425 194 0 29 chr9 126972608 126972702 -15298742 - LTR33 LTR ERVL 0 521 429 1251 152 135 91 chr9 126972702 126973131 -15298313 + LTR7 LTR ERV1 1 448 -2 533 165 0 0 chr9 126973166 126973245 -15298199 + AluJb SINE Alu 204 282 -30 2178 87 3 62 chr9 126973257 126973445 -15297999 - AluSx SINE Alu -7 305 142 2626 61 0 0 chr9 126973445 126973756 -15297688 - AluY SINE Alu 0 311 1 2178 87 3 62 chr9 126973756 126973888 -15297556 - AluSx SINE Alu -170 142 4 341 290 1 40 chr9 126973920 126974044 -15297400 + MER77 LTR ERV1 24 183 -422 774 266 101 88 chr9 126974076 126974464 -15296980 + MER21B LTR ERV1 133 532 -331 4903 91 7 58 chr9 126974464 126974560 -15296884 + LTR8 LTR ERV1 1 100 -591 2388 84 10 3 chr9 126974560 126974868 -15296576 - AluSx SINE Alu -1 311 2 4903 91 7 58 chr9 126974868 126975499 -15295945 + LTR8 LTR ERV1 100 691 0 774 266 101 88 chr9 126975499 126975677 -15295767 + MER21B LTR ERV1 532 706 -157 980 241 155 66 chr9 126975682 126975857 -15295587 - LTR33 LTR ERVL -88 433 275 2244 120 10 0 chr9 126975857 126976166 -15295278 - AluSq SINE Alu -1 312 1 980 241 155 66 chr9 126976166 126976384 -15295060 - LTR33 LTR ERVL -246 275 5 375 304 33 33 chr9 126976503 126976687 -15294757 + MLT1J LTR MaLR 325 508 -3 1345 131 5 54 chr9 126976966 126977188 -15294256 + AluSg/x SINE Alu 85 295 -17 2123 123 7 0 chr9 126977249 126977567 -15293877 - AluSx SINE Alu 0 320 1 1320 215 10 34 chr9 126977576 126977874 -15293570 - AluJo SINE Alu -21 291 1 462 241 229 12 chr9 126977876 126978125 -15293319 + L1ME4a LINE L1 5817 6119 -2 2110 157 5 43 chr9 126978209 126978502 -15292942 - MLT1A1 LTR MaLR 0 365 87 2442 77 0 0 chr9 126978502 126978801 -15292643 - AluY SINE Alu -12 299 1 2110 157 5 43 chr9 126978801 126978877 -15292567 - MLT1A1 LTR MaLR -278 87 10 225 371 8 8 chr9 126979431 126979563 -15291881 + MER117 DNA MER1_type 4 135 -62 224 283 0 0 chr9 126980775 126980828 -15290616 + CT-rich Low_complexity Low_complexity 3 55 0 971 254 81 81 chr9 126981251 126981440 -15290004 - MLT1J LTR MaLR -69 442 254 1739 160 20 30 chr9 126981440 126981740 -15289704 + AluJo SINE Alu 1 297 -15 971 254 81 81 chr9 126981740 126981956 -15289488 - MLT1J LTR MaLR -256 255 37 551 296 84 26 chr9 126982215 126982594 -15288850 - L1ME LINE L1 -463 5658 5258 2391 78 3 0 chr9 126982600 126982894 -15288550 - AluY SINE Alu -16 295 1 28 0 0 0 chr9 126983130 126983158 -15288286 + AT_rich Low_complexity Low_complexity 1 28 0 315 221 110 43 chr9 126983163 126983326 -15288118 - L1ME LINE L1 -1336 4810 4637 3465 187 19 12 chr9 126983326 126984011 -15287433 + L1 LINE L1 3483 4172 -1974 2065 114 3 19 chr9 126984013 126984328 -15287116 + AluSx SINE Alu 2 311 -1 288 234 16 0 chr9 126984403 126984467 -15286977 - L1ME LINE L1 -592 5506 5442 * 2323 229 87 46 chr9 126984465 126984511 -15286933 - L1ME LINE L1 -1095 4985 4942 938 213 0 0 chr9 126984511 126984675 -15286769 - AluJo SINE Alu -2 300 137 2323 229 87 46 chr9 126984675 126985547 -15285897 - L1ME LINE L1 -1138 4942 4029 772 164 27 14 chr9 126985552 126985698 -15285746 - MLT1A1 LTR MaLR 0 365 218 2095 123 7 10 chr9 126985703 126985790 -15285654 - AluSx SINE Alu 0 372 286 213 39 0 0 chr9 126985790 126985816 -15285628 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2095 123 7 10 chr9 126985816 126986101 -15285343 - AluSx SINE Alu -86 286 1 1630 187 3 23 chr9 126986102 126986401 -15285043 - AluJb SINE Alu -19 293 1 755 237 26 36 chr9 126986415 126986609 -15284835 - MLT1A1 LTR MaLR -172 193 2 4791 238 65 53 chr9 126986611 126986759 -15284685 - L1ME LINE L1 -2055 4025 3880 928 111 0 22 chr9 126986759 126986894 -15284550 - AluJo SINE Alu -169 133 2 4791 238 65 53 chr9 126986894 126987657 -15283787 - L1ME LINE L1 -2200 3880 3128 1491 221 14 0 chr9 126987657 126987947 -15283497 + AluJo SINE Alu 1 294 -18 4791 238 65 53 chr9 126987947 126988066 -15283378 - L1ME LINE L1 -2952 3128 3012 2191 87 10 24 chr9 126988066 126988376 -15283068 - AluSx SINE Alu 0 306 1 4791 238 65 53 chr9 126988376 126988611 -15282833 - L1ME LINE L1 -3068 3012 2781 2373 82 0 38 chr9 126988611 126988926 -15282518 + AluSq SINE Alu 1 303 -10 4791 238 65 53 chr9 126988926 126989642 -15281802 - L1ME LINE L1 -3299 2781 2018 2725 243 92 74 chr9 126989629 126989797 -15281647 - L1ME LINE L1 -4597 1483 1320 * 2094 123 0 0 chr9 126989797 126990109 -15281335 - AluSx SINE Alu 0 312 1 2725 243 92 74 chr9 126990109 126990179 -15281265 - L1ME LINE L1 -4760 1320 1253 2214 85 0 63 chr9 126990179 126990496 -15280948 + AluY SINE Alu 1 297 -14 2725 243 92 74 chr9 126990496 126990704 -15280740 - L1ME LINE L1 -4827 1253 1050 1827 171 0 23 chr9 126990704 126991013 -15280431 - AluJb SINE Alu -8 304 3 2725 243 92 74 chr9 126991013 126991270 -15280174 - L1ME LINE L1 -5030 1050 799 1888 145 26 22 chr9 126991270 126991581 -15279863 - AluSx SINE Alu 0 312 1 2725 243 92 74 chr9 126991581 126992153 -15279291 - L1ME LINE L1 -5281 799 270 2350 115 0 3 chr9 126992153 126992466 -15278978 - AluSx SINE Alu 0 312 1 2725 243 92 74 chr9 126992466 126992706 -15278738 - L1ME LINE L1 -5810 270 36 296 241 95 52 chr9 126993253 126993369 -15278075 - L1ME LINE L1 -5944 126 6 237 315 62 42 chr9 126993450 126993853 -15277591 - L1MEc LINE L1 -3319 2896 2486 679 265 183 25 chr9 126993936 126994330 -15277114 + MLT1H1 LTR MaLR 1 465 -90 189 0 0 0 chr9 126994330 126994351 -15277093 + (CAGCC)n Simple_repeat Simple_repeat 1 21 0 679 265 183 25 chr9 126994351 126994459 -15276985 + MLT1H1 LTR MaLR 465 555 0 9399 233 65 49 chr9 126994483 126994650 -15276794 - L1MEc LINE L1 -803 5326 5163 2101 128 0 0 chr9 126994650 126994966 -15276478 + AluSx SINE Alu 1 316 0 9399 233 65 49 chr9 126994966 126995418 -15276026 - L1MEc LINE L1 -966 5163 4720 588 129 11 0 chr9 126995418 126995511 -15275933 - L1PA16 LINE L1 -9 6157 6064 9399 233 65 49 chr9 126995511 126996600 -15274844 - L1MEc LINE L1 -1409 4720 3650 6053 82 23 0 chr9 126996600 126997676 -15273768 - L1PA14 LINE L1 0 6161 5049 9399 233 65 49 chr9 126997676 126999576 -15271868 - L1MEc LINE L1 -2479 3650 1657 2756 123 16 23 chr9 126999576 126999805 -15271639 - MSTB LTR MaLR 0 426 200 2233 108 0 10 chr9 126999805 127000110 -15271334 - AluSg SINE Alu -8 302 1 2756 123 16 23 chr9 127000110 127000309 -15271135 - MSTB LTR MaLR -226 200 1 9399 233 65 49 chr9 127000309 127000854 -15270590 - L1MEc LINE L1 -4472 1657 1122 484 300 64 72 chr9 127000910 127002110 -15269334 - L1MEc LINE L1 -4421 1975 786 5087 89 6 11 chr9 127002724 127003418 -15268026 - LTR8 LTR ERV1 -1 690 1 409 271 69 73 chr9 127003867 127004010 -15267434 - HAL1 LINE L1 -741 1766 1624 2150 102 7 16 chr9 127004010 127004313 -15267131 - AluSx SINE Alu -12 300 1 409 271 69 73 chr9 127004313 127004486 -15266958 - HAL1 LINE L1 -883 1624 1451 2221 112 3 3 chr9 127004932 127004949 -15266495 - AluSx SINE Alu -9 303 287 224 29 0 29 chr9 127004949 127004983 -15266461 + (TG)n Simple_repeat Simple_repeat 2 34 0 2221 112 3 3 chr9 127004983 127005268 -15266176 - AluSx SINE Alu -24 288 1 3751 203 70 18 chr9 127005365 127005824 -15265620 - L1ME1 LINE L1 -12 6154 5721 2280 120 0 7 chr9 127005824 127006133 -15265311 - AluSx SINE Alu -5 307 1 3751 203 70 18 chr9 127006133 127006525 -15264919 - L1ME1 LINE L1 -445 5721 5258 2073 133 17 0 chr9 127006543 127006836 -15264608 - AluSx SINE Alu -14 298 1 655 176 32 0 chr9 127006836 127006961 -15264483 - FLAM_A SINE Alu -4 129 1 2212 119 0 22 chr9 127007043 127007354 -15264090 + AluSx SINE Alu 1 304 -8 544 305 92 15 chr9 127007370 127007642 -15263802 - L1ME3A LINE L1 -278 5892 5600 350 251 76 75 chr9 127007634 127007837 -15263607 - L1MEc LINE L1 -1391 1099 943 * 2581 40 0 7 chr9 127007837 127008134 -15263310 + AluY SINE Alu 2 296 -15 350 251 76 75 chr9 127008134 127008270 -15263174 - L1MEc LINE L1 -1547 943 809 2184 132 12 15 chr9 127008421 127008761 -15262683 + MER1B DNA MER1_type 1 339 0 2066 107 35 3 chr9 127009287 127009576 -15261868 - AluSx SINE Alu -14 298 1 237 246 55 0 chr9 127009607 127009717 -15261727 + (TCTCTG)n Simple_repeat Simple_repeat 1 116 0 2455 83 3 0 chr9 127010451 127010753 -15260691 + AluSx SINE Alu 2 304 -8 2363 95 0 3 chr9 127011489 127011794 -15259650 + AluSq SINE Alu 1 304 -9 390 277 92 11 chr9 127012516 127012714 -15258730 + MIR SINE MIR 22 232 -30 477 274 115 56 chr9 127012787 127013075 -15258369 - MLT1I LTR MaLR 0 409 105 270 305 10 23 chr9 127013217 127013355 -15258089 + MER5A DNA MER1_type 1 145 -44 1426 130 24 5 chr9 127013400 127013608 -15257836 - AluSq SINE Alu -97 216 5 313 303 42 14 chr9 127013653 127013795 -15257649 + MIR SINE MIR 5 150 -112 192 256 0 0 chr9 127013803 127013846 -15257598 + L2 LINE L2 3210 3252 -20 2112 133 9 6 chr9 127013862 127014199 -15257245 - L1MC1 LINE L1 0 6333 5996 563 271 54 6 chr9 127014440 127014606 -15256838 - MER5B DNA MER1_type -1 177 4 533 228 161 0 chr9 127014624 127014773 -15256671 + MER5A DNA MER1_type 9 181 -8 548 175 167 0 chr9 127014778 127014898 -15256546 + AluJb SINE Alu 2 141 -171 1730 141 4 11 chr9 127014903 127015172 -15256272 + AluJo SINE Alu 11 277 -35 21 0 0 0 chr9 127015175 127015196 -15256248 + AT_rich Low_complexity Low_complexity 1 21 0 2381 97 0 6 chr9 127015310 127015670 -15255774 - AluSg SINE Alu 0 359 2 496 282 70 0 chr9 127015679 127015892 -15255552 + L2 LINE L2 1993 2220 -1094 488 229 214 0 chr9 127015952 127016083 -15255361 + MER45A DNA AcHobo 1 159 -19 382 274 88 92 chr9 127016549 127016827 -15254617 + L2 LINE L2 2818 3095 -177 2196 112 20 3 chr9 127016827 127017130 -15254314 - AluSx SINE Alu -4 308 1 382 274 88 92 chr9 127017130 127017308 -15254136 + L2 LINE L2 3095 3272 0 712 187 115 0 chr9 127017660 127017799 -15253645 - MER63 DNA MER1_type -55 781 1 2616 154 38 0 chr9 127018305 127018728 -15252716 - Tigger2 DNA MER2_type 0 2718 2280 2002 132 0 20 chr9 127018750 127019053 -15252391 + AluJb SINE Alu 1 297 -15 2587 68 0 0 chr9 127019053 127019363 -15252081 + AluY SINE Alu 1 310 -1 377 143 0 16 chr9 127019370 127019433 -15252011 - Tigger2 DNA MER2_type -2655 63 2 2203 104 3 26 chr9 127019495 127019804 -15251640 + AluSq SINE Alu 1 302 -11 443 246 143 56 chr9 127020254 127020461 -15250983 - L2 LINE L2 -43 3270 3082 2129 116 10 7 chr9 127020461 127020755 -15250689 + AluSx SINE Alu 1 295 -17 443 246 143 56 chr9 127020755 127021019 -15250425 - L2 LINE L2 -231 3082 2760 2202 124 0 3 chr9 127021418 127021725 -15249719 - AluSx SINE Alu -6 306 1 4297 205 20 34 chr9 127021751 127022363 -15249081 - L1MA9 LINE L1 -38 6274 5655 2640 113 51 17 chr9 127022363 127022777 -15248667 + MSTA LTR MaLR 1 428 0 4297 205 20 34 chr9 127022777 127023735 -15247709 - L1MA9 LINE L1 -657 5655 4725 2261 99 7 16 chr9 127023735 127024038 -15247406 + AluSq SINE Alu 1 300 -13 4297 205 20 34 chr9 127024038 127024213 -15247231 - L1MA9 LINE L1 -1587 4725 4549 * 5184 207 18 12 chr9 127024211 127024321 -15247123 + L1 LINE L1 3376 3484 -2662 2742 129 26 2 chr9 127024321 127024739 -15246705 - MSTA LTR MaLR 0 428 1 5184 207 18 12 chr9 127024739 127025837 -15245607 + L1 LINE L1 3484 4592 -1554 304 310 0 21 chr9 127026038 127026180 -15245264 + CT-rich Low_complexity Low_complexity 1 139 0 186 308 22 22 chr9 127026545 127026636 -15244808 - L3 LINE CR1 -630 947 857 * 279 279 47 0 chr9 127026628 127026714 -15244730 + MIR SINE MIR 92 181 -81 2255 121 7 0 chr9 127027209 127027516 -15243928 - AluSx SINE Alu -3 309 1 2066 124 20 3 chr9 127027887 127028186 -15243258 - AluSg SINE Alu -6 304 1 2010 160 0 3 chr9 127028854 127029167 -15242277 - AluJo SINE Alu 0 312 1 1928 101 0 8 chr9 127029634 127029891 -15241553 - AluSx SINE Alu -57 255 1 232 336 53 25 chr9 127029953 127030197 -15241247 - MLT1L LTR MaLR -363 252 2 2261 103 14 0 chr9 127030379 127030669 -15240775 - AluSx SINE Alu -18 294 1 180 221 192 10 chr9 127030694 127030798 -15240646 - L2 LINE L2 -3181 133 11 2366 83 37 0 chr9 127031034 127031334 -15240110 + AluY SINE Alu 1 311 0 462 266 9 0 chr9 127031494 127031603 -15239841 + MIR SINE MIR 44 153 -55 355 179 15 0 chr9 127032134 127032201 -15239243 + MIR SINE MIR 58 125 -137 1798 144 0 19 chr9 127032608 127032879 -15238565 + AluSx SINE Alu 41 306 -6 2422 228 57 24 chr9 127032879 127032926 -15238518 + L1MB7 LINE L1 5432 5476 -708 2300 117 0 0 chr9 127032926 127033234 -15238210 + AluSq SINE Alu 4 311 -2 2422 228 57 24 chr9 127033234 127033905 -15237539 + L1MB7 LINE L1 5476 6174 -10 314 290 129 26 chr9 127033958 127034113 -15237331 - MIR SINE MIR -1 261 91 347 314 59 0 chr9 127034176 127034294 -15237150 + MIR SINE MIR 68 192 -70 2169 111 0 3 chr9 127034466 127034755 -15236689 - AluSg SINE Alu -14 296 9 300 307 59 0 chr9 127034975 127035076 -15236368 - L2 LINE L2 -1 3271 3165 379 242 167 8 chr9 127035471 127035603 -15235841 - MIR SINE MIR -34 228 76 209 323 32 0 chr9 127035661 127035754 -15235690 + GA-rich Low_complexity Low_complexity 2 97 0 204 381 12 0 chr9 127035870 127035954 -15235490 - MER91A DNA MER1_type -40 156 72 279 257 30 10 chr9 127036175 127036276 -15235168 + (TCCA)n Simple_repeat Simple_repeat 1 103 0 383 321 78 42 chr9 127036280 127036473 -15234971 - L2 LINE L2 0 3272 3073 501 172 32 25 chr9 127036493 127036650 -15234794 + GA-rich Low_complexity Low_complexity 5 162 0 216 309 0 15 chr9 127036696 127036764 -15234680 - L2 LINE L2 -214 3058 2992 2345 97 0 7 chr9 127036795 127037103 -15234341 + AluSx SINE Alu 1 306 -6 505 117 13 0 chr9 127039205 127039282 -15232162 + MLT1A2 LTR MaLR 8 85 -289 2267 119 0 3 chr9 127039283 127039593 -15231851 + AluY SINE Alu 1 309 -2 2356 103 0 0 chr9 127039778 127040080 -15231364 + AluSx SINE Alu 11 312 0 421 175 10 41 chr9 127040234 127040303 -15231141 - LTR40b LTR ERVL -368 94 27 1740 201 24 29 chr9 127040303 127040677 -15230767 - MLT1A2 LTR MaLR -2 372 1 421 175 10 41 chr9 127040677 127040704 -15230740 - LTR40b LTR ERVL -435 27 1 1514 202 22 22 chr9 127040798 127041155 -15230289 + LTR40b LTR ERVL 106 462 0 452 351 63 34 chr9 127041462 127041572 -15229872 - MIR SINE MIR -11 251 146 2733 95 3 14 chr9 127041572 127041940 -15229504 + THE1B LTR MaLR 1 364 0 452 351 63 34 chr9 127041940 127042068 -15229376 - MIR SINE MIR -116 146 6 486 270 54 56 chr9 127042637 127042887 -15228557 - MIR SINE MIR 0 262 16 2474 80 0 0 chr9 127043406 127043706 -15227738 + AluY SINE Alu 1 300 -11 199 313 45 15 chr9 127043730 127043797 -15227647 - MIR SINE MIR -75 187 119 1191 143 16 49 chr9 127044118 127044363 -15227081 - L1MB2 LINE L1 0 6171 5935 296 355 66 0 chr9 127044825 127044977 -15226467 - MIR SINE MIR -1 261 100 2048 143 0 0 chr9 127044977 127045271 -15226173 + AluSx SINE Alu 1 294 -18 626 268 41 16 chr9 127045389 127045583 -15225861 + MIR SINE MIR 28 226 -36 983 120 0 0 chr9 127045702 127045835 -15225609 + FLAM_C SINE Alu 1 133 0 2167 121 0 16 chr9 127045848 127046162 -15225282 + AluY SINE Alu 1 309 -2 589 259 72 5 chr9 127046163 127046356 -15225088 - L2 LINE L2 -1539 1775 1570 1939 119 18 11 chr9 127046472 127046758 -15224686 + AluSx SINE Alu 1 288 -24 212 0 0 35 chr9 127046761 127046790 -15224654 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 464 179 0 0 chr9 127046840 127046918 -15224526 - MER63 DNA MER1_type -84 752 675 21 57 0 0 chr9 127047163 127047198 -15224246 + AT_rich Low_complexity Low_complexity 1 35 0 1781 216 39 30 chr9 127047199 127047662 -15223782 + MLT1C LTR MaLR 1 467 0 2099 158 16 29 chr9 127047692 127048072 -15223372 - THE1C LTR MaLR 0 375 1 1693 148 8 4 chr9 127048147 127048403 -15223041 + AluJo SINE Alu 1 257 -55 2285 113 10 0 chr9 127048476 127048785 -15222659 + AluSq SINE Alu 1 312 -1 2990 112 5 0 chr9 127049143 127049571 -15221873 - LTR8 LTR ERV1 0 691 262 752 284 10 10 chr9 127049772 127049973 -15221471 - MLT1I LTR MaLR -208 201 1 266 196 36 0 chr9 127050197 127050253 -15221191 - L2 LINE L2 -5 3267 3210 * 466 308 27 67 chr9 127050252 127050476 -15220968 + L2 LINE L2 3007 3221 -51 218 179 0 0 chr9 127050497 127050555 -15220889 + (ACTG)n Simple_repeat Simple_repeat 1 58 0 2162 109 0 3 chr9 127050620 127050929 -15220515 + AluSq SINE Alu 1 308 0 386 318 68 33 chr9 127050960 127051287 -15220157 - L1M4 LINE L1 -1446 4700 4355 2215 77 3 42 chr9 127051287 127051597 -15219847 - AluY SINE Alu -13 298 1 386 318 68 33 chr9 127051597 127051668 -15219776 - L1M4 LINE L1 -1791 4355 4288 465 256 201 36 chr9 127051748 127051967 -15219477 + MIR SINE MIR 2 256 -6 440 207 43 43 chr9 127052535 127052651 -15218793 - L2 LINE L2 -1 3312 3197 2269 132 0 0 chr9 127052751 127053062 -15218382 - AluSx SINE Alu -1 311 1 1808 144 21 21 chr9 127053128 127053419 -15218025 - AluJb SINE Alu -21 291 1 306 246 33 33 chr9 127053425 127053547 -15217897 - L1MC5 LINE L1 -34 7927 7806 512 294 80 12 chr9 127053579 127053742 -15217702 - MIR SINE MIR -57 205 32 1886 141 7 46 chr9 127053751 127054057 -15217387 - AluSx SINE Alu -18 294 1 2493 75 0 28 chr9 127054720 127055040 -15216404 + AluY SINE Alu 1 311 0 1677 134 25 72 chr9 127055059 127055379 -15216065 + AluJb SINE Alu 5 309 -3 414 100 0 0 chr9 127055379 127055439 -15216005 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 256 312 11 0 chr9 127056382 127056475 -15214969 + MER117 DNA MER1_type 75 168 -29 1980 146 3 26 chr9 127057179 127057481 -15213963 - AluSx SINE Alu -17 295 1 2077 140 3 10 chr9 127057485 127057793 -15213651 - AluSx SINE Alu -6 306 1 1804 141 32 72 chr9 127058492 127058869 -15212575 - L1M3 LINE L1 -361 5810 5449 2052 155 3 0 chr9 127058892 127059196 -15212248 - AluSx SINE Alu -7 305 1 953 274 139 29 chr9 127060754 127061170 -15210274 - L2 LINE L2 0 3313 2852 2263 112 0 7 chr9 127061209 127061514 -15209930 - AluSg SINE Alu -7 303 1 707 289 64 21 chr9 127061519 127061892 -15209552 - L1ME3A LINE L1 -198 5972 5584 251 324 0 0 chr9 127061894 127061965 -15209479 - MIR SINE MIR -101 161 91 1782 135 0 0 chr9 127062651 127062895 -15208549 + AluSx SINE Alu 1 244 -68 339 277 50 0 chr9 127063440 127063541 -15207903 - MIR SINE MIR -77 185 80 422 177 51 0 chr9 127064306 127064385 -15207059 + MER41A LTR ERV1 472 554 0 2316 107 0 0 chr9 127064428 127064726 -15206718 + AluSx SINE Alu 1 298 -14 702 176 59 0 chr9 127064833 127064952 -15206492 - FLAM_A SINE Alu -6 127 2 367 265 99 1 chr9 127064988 127065114 -15206330 + MLT1J LTR MaLR 45 144 -302 1065 186 109 81 chr9 127065114 127065545 -15205899 + LTR7 LTR ERV1 1 443 -7 387 268 73 60 chr9 127066710 127067104 -15204340 + MLT1H LTR MaLR 53 549 0 2031 141 16 3 chr9 127067192 127067498 -15203946 + AluSx SINE Alu 1 310 -2 1325 152 144 0 chr9 127067501 127067764 -15203680 - LTR28 LTR ERV1 -719 301 1 328 247 155 0 chr9 127068120 127068217 -15203227 - L1ME4a LINE L1 -193 5928 5817 1344 221 10 34 chr9 127068219 127068513 -15202931 + AluJo SINE Alu 1 287 -25 2073 129 7 0 chr9 127068526 127068820 -15202624 + AluSx SINE Alu 1 296 -16 182 282 120 51 chr9 127069149 127069266 -15202178 + MIR SINE MIR 47 171 -91 696 226 53 29 chr9 127069426 127069634 -15201810 - L1 LINE L1 -2451 3695 3483 279 221 110 43 chr9 127069634 127069797 -15201647 + L1ME4a LINE L1 4637 4810 -1336 354 260 54 125 chr9 127069802 127070066 -15201378 + L1ME4a LINE L1 5011 5237 -909 2141 90 3 10 chr9 127070066 127070355 -15201089 + AluY SINE Alu 1 287 -24 354 260 54 125 chr9 127070355 127070497 -15200947 + L1ME4a LINE L1 5237 5388 -758 320 322 61 16 chr9 127070512 127070757 -15200687 + L1ME4a LINE L1 5403 5658 -463 2095 256 25 55 chr9 127071217 127071974 -15199470 + L1M4 LINE L1 3213 3940 -2206 949 111 0 22 chr9 127071974 127072109 -15199335 + FLAM_C SINE Alu 2 133 0 2095 256 25 55 chr9 127072109 127072257 -15199187 + L1M4 LINE L1 3940 4091 -2055 669 231 35 35 chr9 127072259 127072458 -15198986 + MLT1A1 LTR MaLR 2 200 -165 563 273 10 73 chr9 127073030 127073235 -15198209 - MIR3 SINE MIR -3 205 14 503 246 11 27 chr9 127073792 127073975 -15197469 + AluSx SINE Alu 2 181 -131 326 169 48 12 chr9 127124513 127124596 -15146848 - L1MC4 LINE L1 0 8042 7957 2133 97 0 35 chr9 127124807 127125118 -15146326 + AluSp SINE Alu 1 300 -13 268 274 130 19 chr9 127125164 127125372 -15146072 + L1ME4a LINE L1 5692 5922 -199 231 204 19 37 chr9 127125448 127125502 -15145942 + LTR67 LTR ERVL 102 154 -403 * 643 260 77 111 chr9 127125462 127125574 -15145870 + MLT1J LTR MaLR 110 224 -287 1788 155 0 32 chr9 127125574 127125884 -15145560 + AluJo SINE Alu 1 300 -12 643 260 77 111 chr9 127125884 127126187 -15145257 + MLT1J LTR MaLR 224 511 0 360 269 25 88 chr9 127126218 127126327 -15145117 + MIR SINE MIR 24 121 -141 1697 143 0 4 chr9 127126327 127126592 -15144852 - AluSx SINE Alu -9 303 40 360 269 25 88 chr9 127126592 127126642 -15144802 + MIR SINE MIR 121 173 -89 189 107 0 0 chr9 127126782 127126810 -15144634 + (T)n Simple_repeat Simple_repeat 1 28 0 196 225 0 0 chr9 127127385 127127425 -15144019 - L2 LINE L2 -2 3311 3272 2105 121 3 0 chr9 127127853 127128158 -15143286 - AluSx SINE Alu -6 306 1 392 200 19 67 chr9 127128393 127128498 -15142946 - MIR SINE MIR -128 134 35 392 271 5 28 chr9 127129052 127129270 -15142174 - MLT1J LTR MaLR -9 502 237 251 300 0 0 chr9 127129499 127129569 -15141875 + GA-rich Low_complexity Low_complexity 3 72 0 2027 110 0 10 chr9 127129673 127129972 -15141472 - AluSq SINE Alu -17 296 1 225 170 21 0 chr9 127129972 127130019 -15141425 + MLT1K LTR MaLR 518 565 -23 184 200 31 46 chr9 127130032 127130097 -15141347 + MIR SINE MIR 82 145 -117 186 43 0 0 chr9 127130574 127130597 -15140847 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 974 149 135 97 chr9 127130601 127130707 -15140737 - AluJo SINE Alu -2 300 199 2134 98 3 0 chr9 127130707 127131003 -15140441 - AluSg SINE Alu -13 297 1 974 149 135 97 chr9 127131003 127131185 -15140259 - AluJo SINE Alu -103 199 1 319 168 147 32 chr9 127131297 127131392 -15140052 - MLT1J LTR MaLR -518 106 1 1527 134 58 15 chr9 127131460 127131721 -15139723 + AluJb SINE Alu 37 308 -4 759 260 65 82 chr9 127131911 127132213 -15139231 - MLT1I LTR MaLR 0 409 103 1473 142 0 116 chr9 127132213 127132347 -15139097 - AluJo SINE Alu -45 267 119 2151 103 3 0 chr9 127132347 127132639 -15138805 - AluSx SINE Alu -19 293 1 1473 142 0 116 chr9 127132639 127132650 -15138794 - AluJo SINE Alu -193 119 108 2508 50 0 0 chr9 127132650 127132947 -15138497 - AluY SINE Alu -14 297 1 1473 142 0 116 chr9 127132947 127133102 -15138342 - AluJo SINE Alu -204 108 1 759 260 65 82 chr9 127133102 127133211 -15138233 - MLT1I LTR MaLR -306 103 5 1928 130 10 0 chr9 127133232 127133525 -15137919 + AluJb SINE Alu 1 296 -16 204 40 0 0 chr9 127133525 127133550 -15137894 + (TA)n Simple_repeat Simple_repeat 2 26 0 305 347 77 42 chr9 127133805 127134116 -15137328 + HERV16 LTR ERVL 1 322 -4674 2006 106 0 3 chr9 127134177 127134562 -15136882 - AluSg SINE Alu 0 384 1 1794 227 36 42 chr9 127134925 127135165 -15136279 - MLT1D LTR MaLR -6 499 259 2198 100 0 0 chr9 127135165 127135466 -15135978 - AluSx SINE Alu -11 301 1 1794 227 36 42 chr9 127135466 127135727 -15135717 - MLT1D LTR MaLR -246 259 1 615 360 25 11 chr9 127135799 127136160 -15135284 + HERV16 LTR ERVL 833 1198 -3798 847 298 93 44 chr9 127136170 127136368 -15135076 + HERV16 LTR ERVL 2365 2552 -2444 2283 89 0 3 chr9 127136368 127136670 -15134774 + AluSx SINE Alu 1 301 -11 847 298 93 44 chr9 127136670 127136927 -15134517 + HERV16 LTR ERVL 2552 2850 -2146 2079 123 0 3 chr9 127136940 127137241 -15134203 - AluSx SINE Alu -12 300 1 2129 113 0 0 chr9 127137256 127137549 -15133895 - AluSx SINE Alu -19 293 1 827 156 0 0 chr9 127137569 127137691 -15133753 - FLAM_C SINE Alu -19 124 3 875 331 44 20 chr9 127137729 127138137 -15133307 + HERV16 LTR ERVL 3136 3553 -2211 1275 184 13 4 chr9 127138184 127138418 -15133026 - MLT1D LTR MaLR -269 236 1 217 200 0 46 chr9 127138435 127138466 -15132978 + (TTCA)n Simple_repeat Simple_repeat 1 30 -32 1869 142 0 3 chr9 127138466 127138769 -15132675 - AluSx SINE Alu 0 304 3 217 200 0 46 chr9 127138769 127138801 -15132643 + (TTCA)n Simple_repeat Simple_repeat 30 62 0 247 294 206 16 chr9 127139035 127139219 -15132225 - MIR SINE MIR -9 253 35 865 191 66 62 chr9 127140123 127140155 -15131289 + L1ME2 LINE L1 5906 5936 -228 1685 149 0 17 chr9 127140155 127140444 -15131000 - AluJb SINE Alu -11 301 18 865 191 66 62 chr9 127140444 127140667 -15130777 + L1ME2 LINE L1 5936 6162 -2 273 29 0 0 chr9 127140718 127140752 -15130692 + (CA)n Simple_repeat Simple_repeat 2 35 0 1357 213 10 10 chr9 127141372 127141673 -15129771 + AluJb SINE Alu 1 301 -11 1729 250 107 14 chr9 127141734 127142353 -15129091 + L1MC4 LINE L1 7177 7852 -190 382 261 0 22 chr9 127142395 127142487 -15128957 - L1MC4 LINE L1 -1339 6703 6614 348 282 47 0 chr9 127142489 127142574 -15128870 - L1MC4 LINE L1 -1339 6703 6615 201 195 0 0 chr9 127142575 127142616 -15128828 + (TA)n Simple_repeat Simple_repeat 2 42 0 269 268 0 10 chr9 127142627 127142724 -15128720 - L1MC4 LINE L1 -1339 6703 6608 2155 98 0 3 chr9 127142724 127143019 -15128425 - AluSq SINE Alu -19 294 1 605 284 37 33 chr9 127143513 127143540 -15127904 - L1ME LINE L1 -399 5722 5697 1859 155 0 10 chr9 127143540 127143844 -15127600 - AluJb SINE Alu -11 301 1 605 284 37 33 chr9 127143844 127144059 -15127385 - L1ME LINE L1 -424 5697 5479 216 360 33 40 chr9 127144449 127144724 -15126720 + L2 LINE L2 2426 2698 -616 227 248 8 66 chr9 127144816 127144937 -15126507 + L2 LINE L2 2894 3007 -265 195 100 0 0 chr9 127145178 127145208 -15126236 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 2077 115 7 0 chr9 127145456 127145752 -15125692 + AluSx SINE Alu 1 298 -14 2066 113 7 10 chr9 127145810 127146111 -15125333 - AluSx SINE Alu -12 300 1 217 308 154 8 chr9 127146312 127146442 -15125002 + L2 LINE L2 2945 3093 -179 473 287 116 41 chr9 127146644 127146871 -15124573 + MIR SINE MIR 7 249 -13 203 257 110 18 chr9 127147054 127147163 -15124281 - MER5A DNA MER1_type -63 126 8 407 232 0 0 chr9 127147920 127148002 -15123442 - MIR SINE MIR -120 142 61 393 236 67 0 chr9 127148150 127148239 -15123205 + MIR SINE MIR 51 145 -117 220 275 29 0 chr9 127148259 127148328 -15123116 + L2 LINE L2 3152 3222 -50 197 247 22 8 chr9 127148433 127148501 -15122943 - MIR SINE MIR -79 129 62 2138 119 0 0 chr9 127148991 127149293 -15122151 - AluSx SINE Alu -10 302 1 2036 157 37 78 chr9 127149649 127149937 -15121507 - MLT1C LTR MaLR 0 467 203 2085 124 0 0 chr9 127149937 127150235 -15121209 - AluSx SINE Alu -14 298 1 2036 157 37 78 chr9 127150235 127150405 -15121039 - MLT1C LTR MaLR -264 203 28 214 226 16 65 chr9 127150448 127150510 -15120934 - L2 LINE L2 -4 3309 3251 383 194 0 0 chr9 127150524 127150586 -15120858 + L2 LINE L2 3252 3313 0 235 250 56 0 chr9 127150623 127150695 -15120749 + MIR SINE MIR 118 193 -69 3416 179 58 51 chr9 127150773 127150802 -15120642 - L1MB7 LINE L1 -8 6176 6149 2131 114 0 0 chr9 127150802 127151129 -15120315 + AluSx SINE Alu 1 327 0 3416 179 58 51 chr9 127151129 127151588 -15119856 - L1MB7 LINE L1 -35 6149 5695 2189 86 0 3 chr9 127151588 127151880 -15119564 - AluY SINE Alu -20 291 1 3416 179 58 51 chr9 127151880 127151894 -15119550 - L1MB7 LINE L1 -489 5695 5683 2229 187 56 11 chr9 127151894 127152359 -15119085 - MER66B LTR ERV1 0 486 1 3416 179 58 51 chr9 127152359 127152656 -15118788 - L1MB7 LINE L1 -501 5683 5367 260 321 112 8 chr9 127152658 127152792 -15118652 - MIR SINE MIR -84 178 31 198 103 0 0 chr9 127153877 127153906 -15117538 + (T)n Simple_repeat Simple_repeat 1 29 0 190 280 186 0 chr9 127154198 127154316 -15117128 + MIR SINE MIR 34 173 -89 802 147 0 22 chr9 127155348 127155484 -15115960 - FLAM_C SINE Alu 0 133 1 534 267 75 6 chr9 127156623 127156784 -15114660 - MIR SINE MIR 0 262 91 320 273 125 16 chr9 127156965 127157093 -15114351 + MIR SINE MIR 47 188 -74 298 269 40 63 chr9 127157113 127157246 -15114198 + Charlie8 DNA MER1_type 2 132 -209 2181 90 13 0 chr9 127157246 127157545 -15113899 + AluSx SINE Alu 1 303 -9 298 269 40 63 chr9 127157545 127157586 -15113858 + Charlie8 DNA MER1_type 132 172 -169 2128 71 53 3 chr9 127158224 127158507 -15112937 + AluY SINE Alu 1 297 -14 399 239 145 7 chr9 127159184 127159322 -15112122 - L1ME4a LINE L1 -1 6120 5964 30 45 0 0 chr9 127159610 127159654 -15111790 + AT_rich Low_complexity Low_complexity 1 44 0 351 279 131 64 chr9 127160013 127160296 -15111148 - L1ME4a LINE L1 -297 5824 5523 1251 161 6 128 chr9 127160317 127160653 -15110791 - AluJo SINE Alu -17 295 1 580 273 95 9 chr9 127160654 127160885 -15110559 - L1ME4a LINE L1 -295 5826 5576 211 307 11 11 chr9 127161056 127161144 -15110300 + MIR SINE MIR 43 130 -78 841 116 0 14 chr9 127161500 127161638 -15109806 - AluSg/x SINE Alu -1 309 174 1805 143 20 3 chr9 127161997 127162297 -15109147 - AluJb SINE Alu -7 305 1 239 264 81 0 chr9 127162438 127162525 -15108919 + MIR SINE MIR 78 171 -91 1946 126 0 14 chr9 127162532 127162825 -15108619 + AluJb SINE Alu 1 289 -23 506 271 0 83 chr9 127163307 127163525 -15107919 - L2 LINE L2 -1 3312 3113 1047 163 64 20 chr9 127163569 127163636 -15107808 + MER46A DNA MER2_type 25 88 -2643 2082 123 0 16 chr9 127163636 127163952 -15107492 - AluSx SINE Alu -1 311 1 1047 163 64 20 chr9 127163952 127164087 -15107357 + MER46A DNA MER2_type 88 236 0 468 258 39 0 chr9 127164124 127164252 -15107192 + L1MD2 LINE L1 6221 6353 -6 1599 182 10 10 chr9 127164329 127164631 -15106813 + AluJo SINE Alu 1 302 -10 358 296 93 37 chr9 127164743 127164905 -15106539 + MIR SINE MIR 65 235 -27 1573 164 8 4 chr9 127164988 127165256 -15106188 - AluJb SINE Alu -24 288 20 466 294 91 60 chr9 127165821 127166086 -15105358 - L1MC4 LINE L1 -15 8027 7755 415 291 197 34 chr9 127166471 127166485 -15104959 - L2 LINE L2 0 3272 3262 1998 126 0 0 chr9 127166485 127166779 -15104665 - AluSg SINE Alu -16 294 1 415 291 197 34 chr9 127166779 127166998 -15104446 - L2 LINE L2 -10 3262 3001 474 277 122 37 chr9 127167007 127167278 -15104166 - L2 LINE L2 -1 3312 3019 232 191 45 82 chr9 127167294 127167404 -15104040 - L1ME4a LINE L1 -42 6079 5974 327 264 117 61 chr9 127167754 127167951 -15103493 - LTR67 LTR ERVL -1 556 349 442 262 108 32 chr9 127168091 127168253 -15103191 - L1ME4a LINE L1 -525 5596 5442 493 274 106 16 chr9 127169541 127169739 -15101705 - MIR SINE MIR -11 251 37 2076 90 10 27 chr9 127170332 127170632 -15100812 - AluSx SINE Alu -17 295 1 389 254 141 14 chr9 127171278 127171420 -15100024 - MIR SINE MIR -66 196 37 192 313 146 0 chr9 127172709 127172805 -15098639 + MIR SINE MIR 37 146 -62 21 0 0 0 chr9 127172984 127173005 -15098439 + AT_rich Low_complexity Low_complexity 1 21 0 1416 183 20 42 chr9 127173009 127173315 -15098129 - AluJo SINE Alu -13 299 1 338 286 54 27 chr9 127174286 127174398 -15097046 + MIR SINE MIR 37 151 -111 231 298 106 0 chr9 127175906 127176010 -15095434 - MIR SINE MIR -6 256 142 341 326 43 28 chr9 127176293 127176434 -15095010 + MIR SINE MIR 18 160 -102 400 252 61 37 chr9 127177173 127177333 -15094111 + MIR SINE MIR 3 163 -63 304 254 144 8 chr9 127177805 127177923 -15093521 - L1ME4a LINE L1 -58 6063 5930 287 304 85 43 chr9 127178021 127178456 -15092988 - L1ME4a LINE L1 -588 5533 5346 198 325 48 12 chr9 127179526 127179609 -15091835 - L2 LINE L2 -5 3267 3182 220 268 0 42 chr9 127179642 127179713 -15091731 - L2 LINE L2 -213 3059 2992 2301 75 0 0 chr9 127181249 127181553 -15089891 - AluY SINE Alu 0 304 1 2434 96 3 3 chr9 127186010 127186322 -15085122 + AluSx SINE Alu 1 312 0 682 115 0 0 chr9 127186330 127186417 -15085027 - AluSg/x SINE Alu -30 280 194 810 146 8 0 chr9 127186417 127186540 -15084904 - AluJb SINE Alu -188 124 1 676 218 137 0 chr9 127187357 127187601 -15083843 + MER33 DNA MER1_type 1 318 -45 243 244 78 11 chr9 127187632 127187722 -15083722 + MER113 DNA MER1_type? 13 108 -413 508 165 259 51 chr9 127187722 127187880 -15083564 - L1ME2 LINE L1 -8 6156 5966 21 36 0 0 chr9 127187884 127187912 -15083532 + AT_rich Low_complexity Low_complexity 1 28 0 1594 174 0 4 chr9 127187948 127188206 -15083238 - AluJb SINE Alu -1 311 55 343 326 21 57 chr9 127189012 127189205 -15082239 + L2 LINE L2 3087 3272 0 651 284 36 26 chr9 127191575 127191769 -15079675 - MIR SINE MIR -62 200 5 1901 129 20 20 chr9 127193054 127193349 -15078095 + AluJb SINE Alu 1 295 -17 1740 107 5 0 chr9 127193434 127193658 -15077786 - AluSx SINE Alu -87 225 1 1297 251 3 0 chr9 127193668 127193963 -15077481 - AluJo SINE Alu -4 308 13 22 0 0 0 chr9 127193981 127194003 -15077441 + AT_rich Low_complexity Low_complexity 1 22 0 2973 174 56 68 chr9 127194103 127194865 -15076579 - L1MB7 LINE L1 -7 6177 5425 355 355 20 35 chr9 127200687 127200887 -15070557 - MIR SINE MIR -10 252 56 3829 151 55 44 chr9 127201503 127202114 -15069330 - Tigger3(Golem) DNA MER2_type -1 3027 2404 1878 121 70 0 chr9 127202114 127202387 -15069057 - AluSx SINE Alu -20 292 1 3829 151 55 44 chr9 127202387 127202552 -15068892 - Tigger3(Golem) DNA MER2_type -624 2404 2242 1599 200 62 0 chr9 127202577 127202867 -15068577 - AluJb SINE Alu -4 308 1 476 167 36 0 chr9 127202876 127202960 -15068484 - Tigger3(Golem) DNA MER2_type -2942 87 1 295 255 0 118 chr9 127204195 127204356 -15067088 + MIR SINE MIR 11 152 -110 183 300 100 0 chr9 127205403 127205463 -15065981 - L2 LINE L2 -18 3254 3189 21 0 0 0 chr9 127205645 127205666 -15065778 + AT_rich Low_complexity Low_complexity 1 21 0 1447 114 78 19 chr9 127205674 127205945 -15065499 - L1MA8 LINE L1 -18 6273 5987 29 28 0 0 chr9 127206291 127206327 -15065117 + AT_rich Low_complexity Low_complexity 1 36 0 672 301 36 5 chr9 127207590 127207809 -15063635 - MIR SINE MIR -3 259 34 203 308 200 31 chr9 127208944 127209139 -15062305 + MIR SINE MIR 29 256 -6 216 303 101 82 chr9 127210614 127210822 -15060622 + L2 LINE L2 3032 3243 -29 940 219 32 23 chr9 127211115 127211334 -15060110 + MER58A DNA MER1_type 1 221 -3 212 299 39 26 chr9 127211427 127211504 -15059940 + MIR SINE MIR 88 165 -97 244 218 157 33 chr9 127214619 127214718 -15056726 - MIR SINE MIR -61 147 38 194 283 0 121 chr9 127215950 127216049 -15055395 + MER5A DNA MER1_type 103 189 0 495 215 32 76 chr9 127216626 127216784 -15054660 - MIR SINE MIR -57 205 55 279 0 0 0 chr9 127217985 127218016 -15053428 + (TG)n Simple_repeat Simple_repeat 2 32 0 451 282 8 8 chr9 127219888 127220005 -15051439 - MIR SINE MIR -75 187 71 230 194 226 0 chr9 127221519 127221581 -15049863 + MIR SINE MIR 110 185 -77 1100 266 78 30 chr9 127224176 127224649 -15046795 + MLT1D LTR MaLR 1 496 -9 214 316 32 32 chr9 127226038 127226133 -15045311 - MIR SINE MIR -60 148 54 1530 119 0 5 chr9 127227258 127227476 -15043968 + AluSq SINE Alu 85 301 -12 185 299 60 0 chr9 127229060 127229127 -15042317 + MIR3 SINE MIR 90 160 -48 1688 131 119 0 chr9 127229223 127229491 -15041953 + AluSg SINE Alu 1 300 0 474 262 145 40 chr9 127229686 127229869 -15041575 - MIR SINE MIR -57 205 2 2061 251 47 30 chr9 127229884 127230242 -15041202 + L1ME3 LINE L1 5071 5422 -740 2024 128 0 13 chr9 127230242 127230548 -15040896 + AluSx SINE Alu 6 307 -5 2061 251 47 30 chr9 127230548 127231054 -15040390 + L1ME3 LINE L1 5422 5958 -204 209 265 88 59 chr9 127231319 127231421 -15040023 + L3 LINE CR1 1393 1497 -80 * 260 238 0 32 chr9 127231381 127231444 -15040000 - MER5A DNA MER1_type -71 118 58 2184 87 45 0 chr9 127231503 127231791 -15039653 - AluSx SINE Alu -11 301 1 2139 129 7 0 chr9 127232251 127232560 -15038884 - AluSx SINE Alu -1 311 1 828 151 0 0 chr9 127232564 127232690 -15038754 - FLAM_C SINE Alu -17 126 1 242 303 128 0 chr9 127232774 127232883 -15038561 + L2 LINE L2 3150 3272 0 379 168 32 16 chr9 127234169 127234294 -15037150 + (TCCA)n Simple_repeat Simple_repeat 1 127 0 180 287 23 69 chr9 127234348 127234435 -15037009 + L3 LINE CR1 1408 1490 -87 2265 96 0 3 chr9 127234441 127234744 -15036700 + AluSg SINE Alu 1 302 -8 305 300 45 18 chr9 127234761 127234871 -15036573 + MER5B DNA MER1_type 19 131 -47 227 317 73 24 chr9 127234763 127234886 -15036558 - MER5A DNA MER1_type -22 167 39 * 184 286 153 10 chr9 127236046 127236144 -15035300 + MIR SINE MIR 34 145 -117 346 189 21 53 chr9 127237103 127237198 -15034246 + MIR SINE MIR 63 154 -108 2080 107 20 10 chr9 127237239 127237537 -15033907 - AluSx SINE Alu -11 301 1 187 181 0 139 chr9 127237763 127237835 -15033609 + L2 LINE L2 3171 3232 -40 211 346 39 0 chr9 127239486 127239564 -15031880 + MIR3 SINE MIR 81 161 -47 182 292 108 33 chr9 127240521 127240641 -15030803 + L2 LINE L2 2909 3037 -235 355 250 77 10 chr9 127241312 127241416 -15030028 + MIR SINE MIR 77 187 -75 * 399 250 0 65 chr9 127241404 127241528 -15029916 + L2 LINE L2 3197 3312 -1 2399 71 0 0 chr9 127243329 127243625 -15027819 - AluSx SINE Alu -16 296 1 211 161 129 0 chr9 127243666 127243733 -15027711 - MIR SINE MIR -79 129 45 205 94 0 0 chr9 127244298 127244330 -15027114 - MIR SINE MIR -121 141 110 426 339 176 4 chr9 127245233 127245478 -15025966 + L2 LINE L2 2986 3272 0 426 271 30 15 chr9 127246365 127246498 -15024946 + MIR3 SINE MIR 29 163 -45 361 315 92 0 chr9 127247225 127247355 -15024089 + MIR SINE MIR 81 222 -40 707 209 0 43 chr9 127247568 127247707 -15023737 - FLAM_A SINE Alu 0 133 1 180 0 0 0 chr9 127248147 127248167 -15023277 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 4562 161 22 37 chr9 127248604 127249234 -15022210 + L1PA16 LINE L1 4680 5318 -848 2108 124 20 0 chr9 127249234 127249540 -15021904 + AluSx SINE Alu 1 312 0 2253 113 3 0 chr9 127249547 127249858 -15021586 + AluSx SINE Alu 1 312 0 4562 161 22 37 chr9 127249858 127249981 -15021463 + L1PA16 LINE L1 5324 5447 -719 1610 201 17 0 chr9 127249981 127250270 -15021174 + AluJb SINE Alu 1 294 -18 4562 161 22 37 chr9 127250270 127251001 -15020443 + L1PA16 LINE L1 5447 6166 0 1752 103 152 4 chr9 127251005 127251268 -15020176 + AluSx SINE Alu 1 302 0 273 257 18 64 chr9 127251816 127251925 -15019519 - MIR SINE MIR -84 124 21 427 278 65 16 chr9 127252517 127252701 -15018743 - MIR SINE MIR -20 242 45 2106 121 26 0 chr9 127253558 127253863 -15017581 + AluSq SINE Alu 1 313 0 1031 139 35 23 chr9 127253865 127254020 -15017424 + AluJo/FRAM SINE Alu 139 298 -14 249 33 0 0 chr9 127254020 127254050 -15017394 + (CCA)n Simple_repeat Simple_repeat 1 30 0 1031 139 35 23 chr9 127254050 127254066 -15017378 + AluJo/FRAM SINE Alu 298 312 0 180 125 0 0 chr9 127254112 127254144 -15017300 + (CAGAGA)n Simple_repeat Simple_repeat 3 34 0 2085 120 30 0 chr9 127254857 127255157 -15016287 + AluSx SINE Alu 1 309 -3 262 293 198 0 chr9 127255564 127255680 -15015764 + MIR SINE MIR 124 262 0 223 384 53 40 chr9 127256240 127256391 -15015053 + L2 LINE L2 3121 3273 -40 1925 108 21 21 chr9 127256532 127256819 -15014625 + AluSg SINE Alu 1 287 -23 265 253 55 33 chr9 127257104 127257195 -15014249 - MIR SINE MIR -91 171 79 1835 110 53 4 chr9 127257632 127257913 -15013531 + AluSx SINE Alu 1 295 -17 483 342 59 5 chr9 127258192 127258379 -15013065 - MIR SINE MIR -19 243 47 200 345 112 9 chr9 127258826 127258942 -15012502 - MIR SINE MIR -18 244 117 233 340 48 0 chr9 127258988 127259091 -15012353 + MIR3 SINE MIR 94 201 -7 2267 82 0 13 chr9 127259842 127260148 -15011296 - AluSq SINE Alu -11 302 1 668 255 91 10 chr9 127260282 127260490 -15010954 + MIR SINE MIR 17 241 -21 206 343 128 23 chr9 127262316 127262581 -15008863 + L2 LINE L2 2488 2780 -534 2258 116 3 0 chr9 127262934 127263245 -15008199 - AluSx SINE Alu 0 312 1 683 278 66 14 chr9 127263924 127264136 -15007308 - MIR SINE MIR -4 258 36 593 264 16 42 chr9 127264947 127265140 -15006304 - MER91A DNA MER1_type -8 188 1 287 323 167 0 chr9 127265382 127265580 -15005864 + L2 LINE L2 3005 3235 -37 216 259 19 0 chr9 127266050 127266104 -15005340 + L3 LINE CR1 1346 1400 -177 261 274 186 0 chr9 127266310 127266412 -15005032 + L3 LINE CR1 1427 1547 -30 459 259 9 9 chr9 127266633 127266749 -15004695 - MIR SINE MIR -97 165 50 251 276 65 24 chr9 127267865 127267988 -15003456 + LTR16A1 LTR ERVL 329 456 -1 234 270 0 0 chr9 127268660 127268723 -15002721 + MER116 DNA Mariner 17 79 -1 207 209 47 0 chr9 127269393 127269436 -15002008 + MIR SINE MIR 56 100 -162 768 292 19 5 chr9 127269609 127269818 -15001626 - MIR SINE MIR 0 262 51 253 208 0 19 chr9 127270273 127270326 -15001118 + GA-rich Low_complexity Low_complexity 1 52 0 360 269 100 23 chr9 127270365 127270495 -15000949 - MIR SINE MIR -103 159 20 349 252 205 16 chr9 127271075 127271202 -15000242 + MIR SINE MIR 87 237 -25 280 285 24 65 chr9 127271274 127271401 -15000043 - MIR SINE MIR -61 147 30 264 306 65 46 chr9 127272566 127272674 -14998770 - MIR SINE MIR -55 153 44 373 348 54 22 chr9 127272774 127272998 -14998446 - MIR SINE MIR 0 262 32 834 80 0 0 chr9 127274011 127274123 -14997321 - AluSx SINE Alu -15 297 186 1360 124 0 0 chr9 127274248 127274434 -14997010 - AluSx SINE Alu -126 186 1 252 327 73 9 chr9 127274445 127274555 -14996889 + MIR SINE MIR 76 192 -70 282 346 90 8 chr9 127274666 127274799 -14996645 + L2 LINE L2 3125 3268 -4 545 324 139 9 chr9 127275156 127275372 -14996072 - MIR SINE MIR -6 256 13 187 43 0 0 chr9 127276868 127276891 -14994553 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2080 110 3 0 chr9 127276891 127277173 -14994271 - AluSp SINE Alu -1 305 1 313 358 20 14 chr9 127277311 127277459 -14993985 + MIR SINE MIR 114 262 0 223 342 105 35 chr9 127277569 127277826 -14993618 - L2 LINE L2 -85 3187 2913 413 265 0 0 chr9 127278638 127278736 -14992708 + MIR3 SINE MIR 81 178 -30 274 174 87 29 chr9 127279101 127279170 -14992274 - MIR SINE MIR -81 181 109 459 0 0 0 chr9 127279279 127279330 -14992114 + (TG)n Simple_repeat Simple_repeat 1 51 0 850 218 6 0 chr9 127279373 127279538 -14991906 + FRAM SINE Alu 1 166 -10 472 315 20 75 chr9 127279676 127279930 -14991514 + MIR SINE MIR 16 255 -7 1876 118 0 57 chr9 127279934 127280231 -14991213 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr9 127280231 127280252 -14991192 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1972 149 7 0 chr9 127280679 127280975 -14990469 - AluSx SINE Alu -14 298 1 282 307 65 24 chr9 127281029 127281209 -14990235 - MIR SINE MIR -64 144 5 248 269 120 9 chr9 127281637 127281745 -14989699 - MIR SINE MIR -118 144 25 187 267 167 0 chr9 127282120 127282180 -14989264 - MIR SINE MIR -58 150 81 369 226 108 10 chr9 127282457 127282559 -14988885 + MIR SINE MIR 27 138 -70 754 234 107 15 chr9 127282564 127282769 -14988675 - MIR SINE MIR -26 236 13 290 268 122 32 chr9 127283572 127283695 -14987749 - MIR SINE MIR -90 172 39 2073 122 3 0 chr9 127284148 127284451 -14986993 - AluSx SINE Alu -8 304 1 277 318 53 35 chr9 127284718 127284888 -14986556 - L2 LINE L2 -266 3006 2834 203 286 0 29 chr9 127284910 127284980 -14986464 - MIR SINE MIR -120 88 21 295 362 33 48 chr9 127285256 127285466 -14985978 - MIR SINE MIR -9 253 47 912 236 45 68 chr9 127286079 127286461 -14984983 + MLT1C LTR MaLR 94 466 -1 2275 107 7 0 chr9 127286719 127287029 -14984415 + AluSx SINE Alu 1 312 0 1728 138 14 7 chr9 127287459 127287735 -14983709 + AluJb SINE Alu 33 310 -2 392 326 43 27 chr9 127288548 127288735 -14982709 - L2 LINE L2 -6 3307 3118 2374 83 3 3 chr9 127288916 127289228 -14982216 + AluSx SINE Alu 1 312 0 204 320 19 34 chr9 127289429 127289553 -14981891 + MIR SINE MIR 38 162 -46 260 271 14 0 chr9 127289717 127289787 -14981657 + MIR SINE MIR 72 142 -120 1535 230 30 0 chr9 127290185 127290515 -14980929 - MER7A DNA MER2_type 0 346 9 2123 127 0 3 chr9 127291055 127291355 -14980089 - AluSx SINE Alu -13 299 1 259 261 15 0 chr9 127293164 127293229 -14978215 - MIR SINE MIR -73 135 70 371 246 216 0 chr9 127293555 127293689 -14977755 - MER117 DNA MER1_type -34 163 1 358 333 57 0 chr9 127293997 127294120 -14977324 + MIR SINE MIR 34 163 -99 330 280 37 0 chr9 127295300 127295407 -14976037 + MIR SINE MIR 80 190 -72 440 321 99 14 chr9 127295596 127295808 -14975636 + MIR SINE MIR 1 230 -32 234 376 31 6 chr9 127296386 127296548 -14974896 - MIR SINE MIR -16 246 81 529 326 79 9 chr9 127296850 127297065 -14974379 + MIR SINE MIR 20 249 -13 557 243 142 19 chr9 127297575 127297874 -14973570 + MER45C DNA AcHobo 4 401 -552 * 978 157 108 5 chr9 127297861 127298065 -14973379 + MER45C DNA AcHobo 729 953 0 264 125 0 42 chr9 127298736 127298784 -14972660 - L2 LINE L2 -10 3262 3217 1749 67 63 17 chr9 127298901 127299140 -14972304 + AluSq SINE Alu 47 296 -17 653 299 95 17 chr9 127299216 127299457 -14971987 + MIR SINE MIR 3 262 0 264 296 19 83 chr9 127300105 127300213 -14971231 + L2 LINE L2 3172 3272 0 437 325 26 7 chr9 127301784 127301935 -14969509 - L2 LINE L2 -3 3269 3116 490 289 30 0 chr9 127302164 127302299 -14969145 + MIR SINE MIR 109 247 -15 303 242 0 0 chr9 127302887 127302953 -14968491 + MIR SINE MIR 83 148 -60 2414 71 0 0 chr9 127302980 127303276 -14968168 - AluSg SINE Alu -14 296 1 956 222 9 0 chr9 127303305 127303526 -14967918 - L1MB5 LINE L1 -30 6144 5922 2040 111 0 33 chr9 127303676 127303982 -14967462 - AluSx SINE Alu -3 309 14 312 291 39 10 chr9 127304986 127305089 -14966355 - MIR SINE MIR -48 214 109 439 220 20 10 chr9 127307414 127307514 -14963930 + MIR SINE MIR 14 114 -148 676 267 109 5 chr9 127307589 127307810 -14963634 + MIR SINE MIR 7 250 -12 2086 96 0 24 chr9 127307817 127308138 -14963306 + AluSx SINE Alu 1 314 0 298 320 85 39 chr9 127308143 127308296 -14963148 + MIR SINE MIR 70 229 -33 252 365 63 8 chr9 127308322 127308448 -14962996 + MIR SINE MIR 8 140 -122 40 91 0 0 chr9 127310287 127310397 -14961047 + GC_rich Low_complexity Low_complexity 1 110 0 206 214 29 29 chr9 127310532 127310635 -14960809 + (CCG)n Simple_repeat Simple_repeat 3 105 0 24 0 0 0 chr9 127310645 127310669 -14960775 + GC_rich Low_complexity Low_complexity 1 24 0 209 143 0 71 chr9 127310731 127310773 -14960671 - MIR SINE MIR -57 151 113 218 341 33 11 chr9 127310932 127311023 -14960421 - L2 LINE L2 -12 3260 3168 311 269 12 131 chr9 127311460 127311508 -14959936 - MIR SINE MIR -113 149 97 1680 158 0 4 chr9 127311508 127311774 -14959670 + AluJo SINE Alu 1 265 -47 311 269 12 131 chr9 127311774 127311885 -14959559 - MIR SINE MIR -165 97 9 614 300 98 14 chr9 127312250 127312421 -14959023 - L2 LINE L2 0 3313 3107 2456 60 0 0 chr9 127312421 127312722 -14958722 + AluY SINE Alu 1 301 -10 614 300 98 14 chr9 127312722 127312837 -14958607 - L2 LINE L2 -206 3107 3003 486 275 28 21 chr9 127313046 127313188 -14958256 - MIR SINE MIR -80 182 40 2144 114 7 0 chr9 127313341 127313638 -14957806 + AluSx SINE Alu 1 299 -13 323 289 58 16 chr9 127314204 127314325 -14957119 - MIR SINE MIR -27 235 110 311 271 12 0 chr9 127314541 127314626 -14956818 - MER94 DNA DNA -47 87 2 226 245 0 0 chr9 127315229 127315278 -14956166 + (TATG)n Simple_repeat Simple_repeat 4 52 0 296 228 166 21 chr9 127315283 127315428 -14956016 - L1MC4a LINE L1 -1850 5958 5793 2093 117 0 3 chr9 127315454 127315754 -14955690 + AluSx SINE Alu 1 299 -13 206 293 121 40 chr9 127315791 127315890 -14955554 - L2 LINE L2 -23 3290 3184 263 317 58 0 chr9 127316034 127316156 -14955288 + MIR SINE MIR 44 174 -61 195 252 58 68 chr9 127316524 127316627 -14954817 - MIR3 SINE MIR -101 107 6 274 309 75 0 chr9 127316699 127316793 -14954651 - MIR SINE MIR -52 210 110 309 328 26 0 chr9 127317550 127317666 -14953778 + MER94 DNA DNA 2 120 -14 312 161 0 32 chr9 127317690 127317752 -14953692 - MER94 DNA DNA -23 111 52 2326 87 0 0 chr9 127317752 127318050 -14953394 + AluSx SINE Alu 1 298 -14 186 296 19 0 chr9 127318286 127318340 -14953104 - MIR SINE MIR -125 137 83 1974 146 6 16 chr9 127318341 127318519 -14952925 - AluJb SINE Alu 0 312 137 2031 122 10 0 chr9 127318519 127318807 -14952637 - AluSx SINE Alu -19 293 3 1974 146 6 16 chr9 127318807 127318943 -14952501 - AluJb SINE Alu -175 137 1 1534 167 0 85 chr9 127319643 127319960 -14951484 + AluJo SINE Alu 6 295 -17 462 313 27 7 chr9 127320299 127320449 -14950995 + MIR SINE MIR 21 173 -89 319 273 25 156 chr9 127320490 127320728 -14950716 - MIR SINE MIR 0 262 56 1784 144 7 14 chr9 127320778 127321085 -14950359 - AluSx SINE Alu 0 315 11 3678 155 28 26 chr9 127321096 127321172 -14950272 + MER49 LTR ERV1 170 244 -679 1975 138 10 0 chr9 127321172 127321461 -14949983 + AluSx SINE Alu 1 292 -20 3678 155 28 26 chr9 127321461 127322127 -14949317 + MER49 LTR ERV1 244 914 -9 2450 75 0 0 chr9 127322194 127322500 -14948944 + AluY SINE Alu 1 306 -5 1827 163 20 0 chr9 127322516 127322822 -14948622 - AluSx SINE Alu 0 312 1 1555 135 15 42 chr9 127322854 127323113 -14948331 + AluSx SINE Alu 61 312 0 391 171 0 12 chr9 127323122 127323204 -14948240 + MER63 DNA MER1_type 44 750 -86 486 279 23 105 chr9 127323394 127323536 -14947908 - MIR SINE MIR -17 245 93 1923 142 7 7 chr9 127323536 127323853 -14947591 + AluSx SINE Alu 1 312 0 1970 158 0 10 chr9 127323861 127324171 -14947273 + AluJo SINE Alu 1 307 -5 486 279 23 105 chr9 127324171 127324277 -14947167 - MIR SINE MIR -176 86 9 277 414 9 0 chr9 127324302 127324413 -14947031 + MIR3 SINE MIR 96 207 -1 1918 73 4 0 chr9 127324618 127324863 -14946581 - AluSx SINE Alu -8 304 59 230 264 0 0 chr9 127324890 127324943 -14946501 - MER63 DNA MER1_type 0 1062 1010 401 275 100 0 chr9 127326119 127326239 -14945205 - MER94 DNA DNA -1 133 2 2159 125 3 0 chr9 127326403 127326714 -14944730 - AluSq SINE Alu -1 312 1 281 296 37 19 chr9 127326773 127326881 -14944563 - MIR SINE MIR -62 146 37 288 203 47 0 chr9 127326985 127327049 -14944395 - MIR SINE MIR -89 119 53 254 378 39 0 chr9 127327528 127327655 -14943789 + L2 LINE L2 2909 3040 -232 341 280 48 59 chr9 127327775 127327991 -14943453 + L2 LINE L2 3026 3239 -33 530 261 42 26 chr9 127328117 127328272 -14943172 - MIR SINE MIR -63 145 5 272 330 84 29 chr9 127328689 127328899 -14942545 + MIR3 SINE MIR 5 242 -20 485 188 11 122 chr9 127329541 127329582 -14941862 + L1MB4 LINE L1 6020 6064 -116 1773 189 0 10 chr9 127329582 127329914 -14941530 + AluJb SINE Alu 1 312 0 485 188 11 122 chr9 127329914 127330002 -14941442 + L1MB4 LINE L1 6064 6126 -54 1933 99 18 3 chr9 127330002 127330343 -14941101 + AluSc SINE Alu 1 309 0 485 188 11 122 chr9 127330343 127330393 -14941051 + L1MB4 LINE L1 6126 6180 0 404 212 119 42 chr9 127330399 127330517 -14940927 - MER96 DNA MER1_type? -43 132 6 1386 147 100 13 chr9 127330796 127331096 -14940348 - L1MB8 LINE L1 -6 6172 5847 * 4253 245 52 54 chr9 127331095 127332301 -14939143 - L1MB8 LINE L1 -567 5599 4392 1975 109 10 26 chr9 127332301 127332614 -14938830 - AluY SINE Alu -3 308 1 4253 245 52 54 chr9 127332614 127333103 -14938341 - L1MB8 LINE L1 -1774 4392 3902 564 56 0 0 chr9 127333103 127333174 -14938270 + Alu SINE Alu 234 304 -6 4253 245 52 54 chr9 127333174 127333637 -14937807 - L1MB8 LINE L1 -2264 3902 3439 1956 145 0 13 chr9 127334026 127334328 -14937116 + AluSx SINE Alu 1 298 -14 2065 131 0 0 chr9 127334328 127334625 -14936819 + AluSx SINE Alu 1 297 -15 2353 82 0 0 chr9 127334730 127335035 -14936409 + AluY SINE Alu 1 305 -6 1097 82 0 0 chr9 127335086 127335232 -14936212 - L1PA14 LINE L1 -1 6160 6015 1573 251 13 18 chr9 127335233 127335385 -14936059 - L1MB8 LINE L1 -2699 3447 3296 2045 149 3 0 chr9 127335385 127335694 -14935750 - AluJo SINE Alu 0 312 3 1573 251 13 18 chr9 127335694 127335717 -14935727 - L1MB8 LINE L1 -2850 3296 3274 2151 112 0 0 chr9 127335717 127336021 -14935423 - AluY SINE Alu -7 304 1 1573 251 13 18 chr9 127336021 127336376 -14935068 - L1MB8 LINE L1 -2872 3274 2917 2066 123 0 16 chr9 127336376 127336396 -14935048 - AluSx SINE Alu -1 311 292 432 0 0 0 chr9 127336396 127336444 -14935000 + (TA)n Simple_repeat Simple_repeat 1 48 0 2066 123 0 16 chr9 127336444 127336739 -14934705 - AluSx SINE Alu -20 292 1 1573 251 13 18 chr9 127336739 127336763 -14934681 - L1MB8 LINE L1 -3229 2917 2894 1238 259 31 58 chr9 127336878 127337295 -14934149 + MLT1I LTR MaLR 2 407 -2 1918 113 29 0 chr9 127337324 127337626 -14933818 - AluSg SINE Alu 0 310 1 1778 179 0 0 chr9 127337744 127338045 -14933399 - AluSx SINE Alu -11 301 1 185 94 31 0 chr9 127338081 127338113 -14933331 + GA-rich Low_complexity Low_complexity 6 38 0 399 211 230 46 chr9 127338257 127338388 -14933056 + L2 LINE L2 3132 3296 -17 2196 96 10 0 chr9 127338388 127338690 -14932754 - AluSg1 SINE Alu -4 305 1 399 211 230 46 chr9 127338690 127338710 -14932734 + L2 LINE L2 3296 3311 -2 1986 96 17 17 chr9 127338875 127339167 -14932277 + AluSx SINE Alu 1 292 -20 434 331 10 19 chr9 127339683 127339867 -14931577 + MIR SINE MIR 10 194 -62 1880 103 71 14 chr9 127340102 127340384 -14931060 + AluSq SINE Alu 6 303 -10 2069 132 0 0 chr9 127340485 127340868 -14930576 - AluSc SINE Alu 0 383 1 2042 127 0 0 chr9 127341074 127341373 -14930071 - AluSx SINE Alu -13 299 1 23 0 0 0 chr9 127341387 127341410 -14930034 + AT_rich Low_complexity Low_complexity 1 23 0 847 265 69 66 chr9 127341443 127341865 -14929579 - HAL1 LINE L1 -49 2458 2036 341 209 0 0 chr9 127341870 127341937 -14929507 - FLAM_A SINE Alu -6 127 61 2242 236 68 60 chr9 127341937 127342648 -14928796 - L1MC4 LINE L1 -771 7271 6567 2073 131 0 3 chr9 127342648 127342954 -14928490 - AluSx SINE Alu -7 305 1 2144 115 0 3 chr9 127342955 127343269 -14928175 - AluSq SINE Alu 0 313 1 2242 236 68 60 chr9 127343269 127343334 -14928110 - L1MC4 LINE L1 -1474 6568 6487 250 247 14 14 chr9 127343468 127343541 -14927903 + GA-rich Low_complexity Low_complexity 4 76 0 1862 153 0 3 chr9 127343817 127344112 -14927332 + AluJb SINE Alu 11 304 -8 320 247 81 3 chr9 127344323 127344338 -14927106 + MIR3 SINE MIR 32 44 -164 2195 115 0 6 chr9 127344338 127344650 -14926794 + AluSx SINE Alu 1 310 -2 320 247 81 3 chr9 127344650 127344765 -14926679 + MIR3 SINE MIR 44 167 -41 258 116 0 0 chr9 127345225 127345268 -14926176 + (TG)n Simple_repeat Simple_repeat 1 43 0 312 233 56 44 chr9 127345884 127345974 -14925470 + MIR3 SINE MIR 96 186 -22 184 277 0 21 chr9 127346495 127346542 -14924902 - L2 LINE L2 -22 3250 3205 1467 199 68 52 chr9 127346873 127347331 -14924113 - LTR33A LTR ERVL 0 523 59 318 298 53 9 chr9 127347608 127347722 -14923722 - MIR SINE MIR -116 146 28 603 246 105 35 chr9 127347892 127348063 -14923381 + MIR SINE MIR 4 186 -76 314 311 61 50 chr9 127348092 127348174 -14923270 - MIR SINE MIR -15 247 167 2260 79 0 0 chr9 127348174 127348464 -14922980 + AluY SINE Alu 1 290 -21 2226 111 0 0 chr9 127348468 127348775 -14922669 + AluSx SINE Alu 1 307 -5 314 311 61 50 chr9 127348775 127348867 -14922577 - MIR SINE MIR -97 165 66 473 227 91 0 chr9 127348885 127349017 -14922427 + LTR33A LTR ERVL 380 523 0 522 348 68 9 chr9 127349027 127349248 -14922196 - MIR SINE MIR -14 248 15 1724 150 31 17 chr9 127349907 127350194 -14921250 - AluJb SINE Alu -21 291 1 207 139 0 0 chr9 127350258 127350294 -14921150 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 406 169 169 17 chr9 127350537 127350655 -14920789 - MER69 DNA AcHobo -3 2523 2388 589 299 45 0 chr9 127350896 127351097 -14920347 + MIR SINE MIR 3 212 -50 234 0 0 0 chr9 127351181 127351207 -14920237 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 396 0 0 0 chr9 127351206 127351250 -14920194 + (TG)n Simple_repeat Simple_repeat 1 44 0 314 257 297 0 chr9 127351251 127351399 -14920045 - L2 LINE L2 -212 3060 2869 346 286 42 17 chr9 127351812 127351931 -14919513 + MIR SINE MIR 25 146 -62 292 299 0 0 chr9 127352126 127352193 -14919251 - MER69 DNA AcHobo -2458 68 2 324 268 10 31 chr9 127352221 127352318 -14919126 - MIR SINE MIR -74 134 40 1798 85 16 0 chr9 127352330 127352577 -14918867 + AluSq SINE Alu 1 251 -62 204 111 0 0 chr9 127352673 127352709 -14918735 + (GA)n Simple_repeat Simple_repeat 2 37 0 344 238 172 0 chr9 127352717 127352839 -14918605 + MIR3 SINE MIR 4 146 -62 369 317 7 35 chr9 127352929 127353071 -14918373 - MIR SINE MIR -10 252 115 366 310 47 77 chr9 127353080 127353444 -14918000 - L2 LINE L2 -41 3231 2879 320 284 7 58 chr9 127353796 127353951 -14917493 + LTR16C LTR ERVL 298 444 -47 793 230 49 20 chr9 127354310 127354514 -14916930 - MIR SINE MIR -52 210 1 457 296 18 76 chr9 127356124 127356271 -14915173 + MIR SINE MIR 33 164 -98 1930 127 0 7 chr9 127356271 127356575 -14914869 - AluSx SINE Alu 0 302 1 457 296 18 76 chr9 127356575 127356653 -14914791 + MIR SINE MIR 164 245 -17 1462 148 32 261 chr9 127356683 127356996 -14914448 + L1MC2 LINE L1 5623 5694 -650 1922 121 36 0 chr9 127356996 127357277 -14914167 + AluSx SINE Alu 1 291 -21 1462 148 32 261 chr9 127357277 127357618 -14913826 + L1MC2 LINE L1 5694 6111 -233 959 181 29 15 chr9 127357633 127357878 -14913566 + L1MC2 LINE L1 6072 6333 0 21 0 0 0 chr9 127357920 127357941 -14913503 + AT_rich Low_complexity Low_complexity 1 21 0 2173 109 10 0 chr9 127357942 127358244 -14913200 + AluSx SINE Alu 1 305 -7 1365 154 63 16 chr9 127359125 127359378 -14912066 + AluSg SINE Alu 5 269 -41 242 29 29 0 chr9 127359386 127359421 -14912023 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 666 325 77 26 chr9 127359421 127359848 -14911596 - L2 LINE L2 -1732 1582 1134 844 245 86 126 chr9 127359855 127359949 -14911495 + MLT1D LTR MaLR 1 97 -408 2268 98 3 19 chr9 127359949 127360266 -14911178 + AluSx SINE Alu 1 312 0 844 245 86 126 chr9 127360266 127360405 -14911039 + MLT1D LTR MaLR 97 240 -265 1825 142 0 19 chr9 127360405 127360723 -14910721 + AluSx SINE Alu 1 312 0 844 245 86 126 chr9 127360723 127361014 -14910430 + MLT1D LTR MaLR 240 505 0 288 321 15 8 chr9 127361050 127361184 -14910260 - L2 LINE L2 -2302 1012 878 266 247 27 0 chr9 127361202 127361275 -14910169 - MIR SINE MIR -68 140 66 190 220 352 44 chr9 127361314 127361405 -14910039 - L2 LINE L2 0 3272 3154 634 198 76 52 chr9 127361577 127361749 -14909695 + MIR SINE MIR 72 247 -15 1248 266 42 18 chr9 127361951 127362282 -14909162 + LTR16C LTR ERVL 153 491 0 1154 362 39 37 chr9 127362282 127363070 -14908374 + HERV16 LTR ERVL 1 790 -4206 376 266 14 58 chr9 127363265 127363372 -14908072 + HERV16 LTR ERVL 1050 1151 -3845 1660 193 20 0 chr9 127363372 127363667 -14907777 + AluJb SINE Alu 1 301 -11 376 266 14 58 chr9 127363667 127363698 -14907746 + HERV16 LTR ERVL 1151 1182 -3814 * 1170 309 11 47 chr9 127363695 127363861 -14907583 + HERV16 LTR ERVL 2274 2444 -3320 2164 122 3 0 chr9 127363861 127364173 -14907271 + AluSp SINE Alu 1 313 0 1170 309 11 47 chr9 127364173 127364476 -14906968 + HERV16 LTR ERVL 2444 2726 -3038 856 220 106 44 chr9 127364485 127364589 -14906855 + MLT2F LTR ERVL 1 97 -566 2208 111 0 0 chr9 127364589 127364887 -14906557 + AluSx SINE Alu 1 298 -14 856 220 106 44 chr9 127364887 127365055 -14906389 + MLT2F LTR ERVL 97 290 -373 226 290 0 0 chr9 127365059 127365121 -14906323 - L2 LINE L2 -35 3237 3176 213 62 62 0 chr9 127365221 127365269 -14906175 + (TA)n Simple_repeat Simple_repeat 2 52 0 801 143 0 0 chr9 127365271 127365390 -14906054 + AluJb SINE Alu 133 251 -61 1782 180 42 36 chr9 127365435 127365611 -14905833 - MSTA LTR MaLR -56 372 198 2125 105 37 0 chr9 127365611 127365907 -14905537 - AluSq SINE Alu -6 307 1 1782 180 42 36 chr9 127365907 127366086 -14905358 - MSTA LTR MaLR -230 198 15 613 168 77 32 chr9 127366086 127366241 -14905203 - L1MB8 LINE L1 -10 6168 6007 729 217 72 18 chr9 127366280 127366446 -14904998 - AluJo SINE Alu -31 281 107 183 80 0 0 chr9 127366528 127366553 -14904891 + (TTCTC)n Simple_repeat Simple_repeat 5 29 0 251 238 0 48 chr9 127366591 127366604 -14904840 - L2 LINE L2 0 3272 3260 1899 119 32 0 chr9 127366604 127366881 -14904563 - AluSx SINE Alu -26 286 1 251 238 0 48 chr9 127366881 127366930 -14904514 - L2 LINE L2 -12 3260 3213 215 306 59 0 chr9 127366929 127367014 -14904430 - MIR SINE MIR -65 143 54 * 402 21 0 0 chr9 127367747 127367794 -14903650 + (TTA)n Simple_repeat Simple_repeat 2 48 0 276 243 24 0 chr9 127368794 127368894 -14902550 + MIR SINE MIR 63 164 -63 25 31 0 0 chr9 127369261 127369293 -14902151 + AT_rich Low_complexity Low_complexity 1 32 0 1559 180 3 18 chr9 127369322 127369606 -14901838 - AluJb SINE Alu -32 280 1 560 236 41 68 chr9 127369651 127369871 -14901573 - MIR SINE MIR -28 234 21 190 239 22 0 chr9 127369871 127369917 -14901527 - L3 LINE CR1 -38 1539 1493 196 276 175 4 chr9 127372058 127372178 -14899266 - MIR SINE MIR -56 152 18 22 56 0 0 chr9 127373567 127373603 -14897841 + GC_rich Low_complexity Low_complexity 1 36 0 322 200 0 0 chr9 127374462 127374522 -14896922 + MIR SINE MIR 79 138 -124 199 175 50 0 chr9 127374800 127374840 -14896604 + MIR SINE MIR 107 148 -114 225 287 37 37 chr9 127375324 127375432 -14896012 + MIR SINE MIR 30 137 -71 2212 105 3 0 chr9 127375493 127375789 -14895655 + AluSx SINE Alu 1 297 -15 295 316 183 23 chr9 127375940 127376241 -14895203 + L3 LINE CR1 1113 1461 -116 379 299 62 0 chr9 127376996 127377140 -14894304 + L2 LINE L2 2897 3049 -223 196 100 0 0 chr9 127377507 127377537 -14893907 + MIR SINE MIR 89 118 -144 283 236 159 64 chr9 127377807 127377948 -14893496 + MIR SINE MIR 35 188 -63 521 202 101 0 chr9 127378100 127378219 -14893225 + MIR SINE MIR 16 146 -116 203 246 130 14 chr9 127379157 127379226 -14892218 - MIR SINE MIR -94 114 38 2238 98 0 7 chr9 127379396 127379692 -14891752 + AluSx SINE Alu 3 296 -16 591 199 112 0 chr9 127379710 127379871 -14891573 - MER2 DNA MER2_type -2 343 165 * 1185 156 9 0 chr9 127379866 127380078 -14891366 - MER2 DNA MER2_type -126 219 6 300 226 36 71 chr9 127380084 127380168 -14891276 + L1MC4a LINE L1 5788 5868 -1940 234 0 0 0 chr9 127380270 127380296 -14891148 + (CA)n Simple_repeat Simple_repeat 2 27 0 2103 98 0 50 chr9 127380385 127380702 -14890742 - AluSx SINE Alu -11 301 1 6061 221 56 48 chr9 127380707 127381914 -14889530 - L1ME1 LINE L1 -223 5943 4748 2104 120 6 22 chr9 127381914 127382231 -14889213 - AluSx SINE Alu 0 312 1 1856 145 6 41 chr9 127382235 127382553 -14888891 - AluJb SINE Alu -5 307 1 6061 221 56 48 chr9 127382553 127383977 -14887467 - L1ME1 LINE L1 -1420 4746 3288 1611 156 64 14 chr9 127384012 127384307 -14887137 - AluJb SINE Alu -2 310 1 33 43 0 0 chr9 127384339 127384386 -14887058 + AT_rich Low_complexity Low_complexity 1 47 0 282 264 142 34 chr9 127384386 127384534 -14886910 - L1ME4a LINE L1 -14 6107 5944 385 282 46 15 chr9 127384592 127384723 -14886721 + MIR SINE MIR 80 214 -48 180 111 0 0 chr9 127384985 127385012 -14886432 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 370 45 0 chr9 127385035 127385259 -14886185 - L1MC4a LINE L1 -1878 5930 5697 2207 120 0 0 chr9 127385537 127385836 -14885608 - AluSx SINE Alu -13 299 1 215 308 68 41 chr9 127385976 127386122 -14885322 + L3 LINE CR1 1409 1558 -19 407 204 32 0 chr9 127386284 127386377 -14885067 - MIR SINE MIR -65 143 48 1867 147 33 13 chr9 127386722 127387028 -14884416 + AluJb SINE Alu 1 312 0 2019 102 25 32 chr9 127387235 127387549 -14883895 + AluSx SINE Alu 1 312 0 214 298 183 0 chr9 127390876 127390980 -14880464 + L3 LINE CR1 1420 1542 -35 256 240 192 56 chr9 127391711 127391836 -14879608 - MIR SINE MIR -107 155 14 392 341 6 24 chr9 127391901 127392068 -14879376 - L2 LINE L2 0 3313 3150 243 234 13 26 chr9 127392419 127392496 -14878948 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 337 20 40 0 chr9 127392612 127392662 -14878782 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 2247 105 0 3 chr9 127392679 127392992 -14878452 - AluSx SINE Alu 0 312 1 235 325 0 18 chr9 127393232 127393346 -14878098 + CT-rich Low_complexity Low_complexity 5 116 0 331 381 7 0 chr9 127393593 127393732 -14877712 + MIR SINE MIR 117 256 -6 2277 101 3 3 chr9 127394178 127394485 -14876959 + AluSq SINE Alu 1 307 -6 207 375 11 0 chr9 127394937 127395025 -14876419 + MIR SINE MIR 117 205 -57 206 334 47 33 chr9 127395090 127395221 -14876223 - MIR3 SINE MIR -36 226 84 357 261 57 0 chr9 127396318 127396441 -14875003 + MIR3 SINE MIR 29 160 -48 220 309 93 0 chr9 127397668 127397765 -14873679 - MIR SINE MIR -97 165 60 31 82 0 0 chr9 127397948 127398021 -14873423 + GC_rich Low_complexity Low_complexity 1 73 0 288 287 116 8 chr9 127398903 127399032 -14872412 - MIR SINE MIR -6 256 114 381 316 68 13 chr9 127400149 127400383 -14871061 + L2 LINE L2 2818 3064 -208 273 287 128 0 chr9 127400572 127400666 -14870778 + MER91A DNA MER1_type 91 196 0 428 183 15 5 chr9 127400694 127400797 -14870647 + MIR SINE MIR 37 139 -69 189 178 0 0 chr9 127402893 127402938 -14868506 + C-rich Low_complexity Low_complexity 3 47 0 266 303 40 13 chr9 127403353 127403505 -14867939 + (CACCAT)n Simple_repeat Simple_repeat 6 161 0 509 273 70 21 chr9 127403563 127403706 -14867738 + MIR SINE MIR 89 238 -24 223 276 30 37 chr9 127403789 127403923 -14867521 + (CACCAT)n Simple_repeat Simple_repeat 3 135 0 1470 207 39 15 chr9 127404115 127404453 -14866991 - MER47A DNA MER2_type -19 347 2 1953 126 0 11 chr9 127404653 127404970 -14866474 + AluSx SINE Alu 1 314 0 304 279 148 0 chr9 127405781 127405932 -14865512 - MER91A DNA MER1_type 0 190 2 182 210 113 16 chr9 127406583 127406645 -14864799 - MIR SINE MIR -167 95 28 511 192 50 25 chr9 127407036 127407156 -14864288 + MIR SINE MIR 50 172 -90 191 398 12 0 chr9 127408067 127408150 -14863294 + L2 LINE L2 2654 2737 -577 280 318 110 45 chr9 127408196 127408460 -14862984 + L2 LINE L2 2837 3117 -155 2342 95 3 0 chr9 127409005 127409311 -14862133 + AluSq SINE Alu 1 307 -6 2000 136 3 10 chr9 127409323 127409625 -14861819 + AluJo SINE Alu 1 300 -12 40 37 0 0 chr9 127409815 127409869 -14861575 + AT_rich Low_complexity Low_complexity 1 54 0 793 109 9 0 chr9 127409869 127409979 -14861465 - FRAM SINE Alu -44 132 22 1959 120 0 7 chr9 127410048 127410380 -14861064 - AluSx SINE Alu 0 330 1 372 333 26 8 chr9 127410635 127410752 -14860692 + L2 LINE L2 3194 3312 -1 203 156 0 0 chr9 127411237 127411269 -14860175 + (CAGGC)n Simple_repeat Simple_repeat 5 36 0 387 323 17 72 chr9 127414674 127414927 -14856517 - MIR SINE MIR -29 233 1 351 299 6 18 chr9 127415260 127415482 -14855962 + GA-rich Low_complexity Low_complexity 1 219 0 512 319 36 16 chr9 127417250 127417483 -14853961 + MIR SINE MIR 17 262 0 306 300 13 18 chr9 127417886 127418013 -14853431 - MIR SINE MIR -55 153 43 203 260 0 0 chr9 127418247 127418297 -14853147 + MIR SINE MIR 213 262 0 * 539 281 38 22 chr9 127418285 127418494 -14852950 + MIR SINE MIR 49 262 0 407 276 70 13 chr9 127418627 127418783 -14852661 + MER103 DNA DNA 2 166 0 580 315 15 38 chr9 127419068 127419287 -14852157 + MIR SINE MIR 11 226 -36 267 311 63 8 chr9 127419642 127419763 -14851681 + MIR SINE MIR 38 164 -67 255 367 82 27 chr9 127419907 127420163 -14851281 + L2 LINE L2 2815 3084 -229 215 306 5 28 chr9 127420223 127420333 -14851111 + MIR SINE MIR 46 141 -67 359 254 68 25 chr9 127422487 127422605 -14848839 - MIR SINE MIR -43 219 97 350 260 10 0 chr9 127422735 127422839 -14848605 + MER103 DNA DNA 12 116 -50 501 253 12 68 chr9 127422861 127423023 -14848421 + MER5B DNA MER1_type 22 174 -4 816 149 8 22 chr9 127423568 127423702 -14847742 - FLAM_A SINE Alu -1 132 1 316 113 42 56 chr9 127423758 127423829 -14847615 - L1MB7 LINE L1 -3 6181 6112 311 291 99 14 chr9 127423836 127423977 -14847467 + MIR SINE MIR 97 249 -13 351 0 0 0 chr9 127424731 127424770 -14846674 + (CA)n Simple_repeat Simple_repeat 2 40 0 1580 174 39 11 chr9 127424822 127425103 -14846341 - AluJb SINE Alu -23 289 1 207 0 0 0 chr9 127425124 127425147 -14846297 + (TC)n Simple_repeat Simple_repeat 2 24 0 225 338 0 0 chr9 127425212 127425280 -14846164 + L2 LINE L2 2992 3059 -213 264 331 66 25 chr9 127425311 127425432 -14846012 + L2 LINE L2 3188 3313 0 375 60 0 0 chr9 127425719 127425769 -14845675 + (TG)n Simple_repeat Simple_repeat 1 50 0 357 291 48 0 chr9 127426550 127426653 -14844791 + MIR SINE MIR 37 144 -64 484 352 36 0 chr9 127426919 127427115 -14844329 - MIR SINE MIR -10 252 50 1926 170 6 3 chr9 127427671 127427982 -14843462 + AluJb SINE Alu 1 312 0 198 0 0 0 chr9 127427986 127428008 -14843436 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1048 156 9 53 chr9 127428035 127428260 -14843184 - MER2 DNA MER2_type -130 215 1 319 333 50 14 chr9 127428475 127428616 -14842828 - MIR SINE MIR -8 254 109 359 305 111 60 chr9 127428618 127428856 -14842588 - MIR SINE MIR -13 249 3 476 319 74 19 chr9 127430088 127430304 -14841140 + MIR SINE MIR 3 230 -32 336 349 113 34 chr9 127430850 127431434 -14840010 + L2 LINE L2 2265 2894 -420 219 245 151 50 chr9 127431477 127431616 -14839828 + L2 LINE L2 2902 3054 -218 876 163 136 0 chr9 127431977 127432161 -14839283 + MER3 DNA MER1_type 1 209 0 2441 65 3 3 chr9 127432908 127433201 -14838243 - AluY SINE Alu -18 293 1 251 73 0 0 chr9 127433326 127433367 -14838077 - AluSp/q SINE Alu -4 299 259 537 73 0 12 chr9 127433482 127433564 -14837880 + Alu SINE Alu 230 310 -1 787 158 12 49 chr9 127433909 127434073 -14837371 + BC200 scRNA scRNA 1 158 -42 207 0 0 0 chr9 127434259 127434282 -14837162 + (T)n Simple_repeat Simple_repeat 1 23 0 2432 95 10 0 chr9 127434321 127434627 -14836817 + AluSc SINE Alu 1 309 0 2330 94 13 3 chr9 127434631 127434939 -14836505 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr9 127435048 127435077 -14836367 + AT_rich Low_complexity Low_complexity 1 29 0 232 306 36 0 chr9 127435088 127435155 -14836289 - MIR SINE MIR -87 121 51 2505 55 0 0 chr9 127435259 127435549 -14835895 + AluY SINE Alu 1 290 -21 278 264 83 76 chr9 127436862 127436967 -14834477 + MIR SINE MIR 106 214 -48 2248 84 21 0 chr9 127436967 127437253 -14834191 + AluY SINE Alu 1 292 -19 278 264 83 76 chr9 127437253 127437291 -14834153 + MIR SINE MIR 214 250 -12 2242 127 0 10 chr9 127437414 127437721 -14833723 + AluSx SINE Alu 1 304 -8 533 256 106 0 chr9 127437731 127437891 -14833553 - MIR SINE MIR -40 222 46 2104 96 55 21 chr9 127438511 127438802 -14832642 + AluSx SINE Alu 1 301 -11 989 70 0 109 chr9 127439189 127439345 -14832099 - AluSg/x SINE Alu -10 302 164 273 244 113 35 chr9 127440376 127440491 -14830953 + L2 LINE L2 2912 3035 -237 1637 159 83 14 chr9 127440491 127440781 -14830663 + AluJb SINE Alu 2 311 -1 2649 157 41 61 chr9 127440826 127441438 -14830006 + L1MB1 LINE L1 4893 5480 -688 207 0 0 0 chr9 127441438 127441461 -14829983 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2649 157 41 61 chr9 127441461 127441807 -14829637 + L1MB1 LINE L1 5480 5832 -336 1100 191 8 29 chr9 127442009 127442250 -14829194 + L1MB1 LINE L1 5933 6168 0 339 293 55 79 chr9 127442453 127442706 -14828738 + L2 LINE L2 2467 2713 -601 852 104 7 37 chr9 127442774 127442909 -14828535 - FLAM_C SINE Alu -12 131 1 247 280 56 56 chr9 127443277 127443402 -14828042 + L2 LINE L2 3057 3181 -91 408 327 41 90 chr9 127444529 127444980 -14826464 - L2 LINE L2 -180 3092 2653 356 335 104 16 chr9 127445188 127445370 -14826074 + MIR SINE MIR 50 247 -15 2317 97 3 0 chr9 127445885 127446174 -14825270 + AluSp SINE Alu 1 290 -23 318 324 53 35 chr9 127446264 127446434 -14825010 - MIR SINE MIR -86 176 4 21 57 0 0 chr9 127446494 127446529 -14824915 + AT_rich Low_complexity Low_complexity 1 35 0 566 139 30 0 chr9 127446546 127446647 -14824797 + L1MC4 LINE L1 7938 8041 -1 555 266 101 21 chr9 127446876 127447064 -14824380 - MIR SINE MIR -58 204 2 280 314 26 46 chr9 127447313 127447466 -14823978 + L2 LINE L2 2702 2851 -463 2088 192 41 91 chr9 127447612 127448341 -14823103 + L1MC4 LINE L1 7349 8041 -1 592 106 0 182 chr9 127448397 127448529 -14822915 + AluJb SINE Alu 15 122 -190 212 167 0 0 chr9 127448767 127448803 -14822641 + L2 LINE L2 3021 3056 -216 346 258 72 121 chr9 127449068 127449494 -14821950 - L2 LINE L2 -99 3173 2754 5161 199 67 67 chr9 127449725 127450423 -14821021 - L1MC4a LINE L1 0 7808 7112 1560 160 99 14 chr9 127450423 127450705 -14820739 - AluSq SINE Alu -7 306 1 5161 199 67 67 chr9 127450705 127450755 -14820689 - L1MC4a LINE L1 -696 7112 7064 928 133 0 0 chr9 127450755 127450883 -14820561 - FLAM_C SINE Alu -5 128 1 5161 199 67 67 chr9 127450883 127451915 -14819529 - L1MC4a LINE L1 -744 7064 6030 242 233 267 17 chr9 127452719 127452839 -14818605 + MIR SINE MIR 97 246 -16 253 342 62 31 chr9 127453049 127453210 -14818234 - MIR SINE MIR -19 243 78 231 343 82 71 chr9 127453273 127453953 -14817491 + L2 LINE L2 2101 2788 -526 358 264 146 9 chr9 127455057 127455167 -14816277 - L2 LINE L2 -3 3310 3186 1083 164 12 0 chr9 127455518 127455689 -14815755 + FRAM SINE Alu 1 172 -4 346 279 203 24 chr9 127455725 127455918 -14815526 + MIR SINE MIR 38 262 0 1836 217 40 42 chr9 127456110 127456510 -14814934 + MLT1D LTR MaLR 1 401 -104 2201 124 3 0 chr9 127456510 127456809 -14814635 - AluSx SINE Alu -12 300 1 1836 217 40 42 chr9 127456809 127456914 -14814530 + MLT1D LTR MaLR 401 505 0 2231 94 3 20 chr9 127457182 127457481 -14813963 - AluSg SINE Alu -16 294 1 384 264 100 29 chr9 127458006 127458146 -14813298 - MIR SINE MIR -54 208 59 417 293 166 10 chr9 127458596 127458801 -14812643 - MIR SINE MIR -14 248 12 273 29 0 0 chr9 127458871 127458905 -14812539 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 186 289 0 0 chr9 127459104 127459156 -14812288 - L2 LINE L2 -11 3261 3210 474 310 78 123 chr9 127459210 127459542 -14811902 - L3 LINE CR1 -4 1573 1228 2236 114 7 3 chr9 127459542 127459849 -14811595 + AluSx SINE Alu 1 308 -4 474 310 78 123 chr9 127459849 127460602 -14810842 - L3 LINE CR1 -349 1228 537 2722 23 0 0 chr9 127460606 127460907 -14810537 - AluYa5 SINE Alu -10 301 1 201 239 0 0 chr9 127461020 127461066 -14810378 + CT-rich Low_complexity Low_complexity 3 48 0 234 259 148 22 chr9 127461322 127461457 -14809987 - L1ME3A LINE L1 0 6170 6019 1626 259 116 36 chr9 127461498 127462267 -14809177 - L1ME3A LINE L1 -224 5946 5240 2184 117 0 3 chr9 127462267 127462588 -14808856 - AluSc SINE Alu 0 309 1 1626 259 116 36 chr9 127462588 127463024 -14808420 - L1ME3A LINE L1 -930 5240 4840 261 0 0 0 chr9 127463024 127463053 -14808391 + (CA)n Simple_repeat Simple_repeat 2 30 0 1626 259 116 36 chr9 127463053 127463586 -14807858 - L1ME3A LINE L1 -1330 4840 3914 1528 191 0 15 chr9 127463625 127463898 -14807546 - AluJo SINE Alu 0 312 44 1010 168 22 11 chr9 127463898 127464083 -14807361 - Tigger5 DNA MER2_type -2136 187 1 259 279 13 13 chr9 127464089 127464168 -14807276 + MIR SINE MIR 174 252 -10 * 440 296 58 17 chr9 127464146 127464318 -14807126 - MIR SINE MIR -27 235 57 276 218 50 50 chr9 127464421 127464522 -14806922 + MER112 DNA MER1_type 67 167 -93 988 185 12 0 chr9 127465141 127465314 -14806130 + FAM SINE Alu 1 175 0 2291 120 0 7 chr9 127465792 127466101 -14805343 - AluSx SINE Alu -1 311 5 1924 151 6 22 chr9 127466270 127466581 -14804863 - AluJb SINE Alu -6 306 1 201 39 0 0 chr9 127466607 127466633 -14804811 + (TATAA)n Simple_repeat Simple_repeat 3 28 0 287 183 0 28 chr9 127466875 127466946 -14804498 + AluS SINE Alu 1 69 -239 292 158 18 0 chr9 127467843 127467900 -14803544 + L2 LINE L2 2992 3049 -223 269 325 106 0 chr9 127468295 127468418 -14803026 + L2 LINE L2 3137 3272 0 183 42 0 0 chr9 127469581 127469605 -14801839 + (CA)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr9 127470194 127470219 -14801225 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 387 223 79 21 chr9 127471030 127471144 -14800300 + MIR SINE MIR 34 151 -63 256 291 104 15 chr9 127471591 127471725 -14799719 - MIR3 SINE MIR -41 167 22 193 156 31 0 chr9 127472010 127472042 -14799402 - MIR SINE MIR -218 44 12 180 176 0 0 chr9 127473088 127473122 -14798322 - MIR SINE MIR -112 150 117 216 0 0 0 chr9 127473876 127473900 -14797544 + (CA)n Simple_repeat Simple_repeat 1 24 0 705 295 9 19 chr9 127474866 127475076 -14796368 - MIR SINE MIR -48 214 7 193 346 30 0 chr9 127475438 127475539 -14795905 + L2 LINE L2 2867 2970 -343 1904 143 13 19 chr9 127480007 127480321 -14791123 - AluJb SINE Alu 0 312 1 332 290 19 9 chr9 127480324 127480431 -14791013 - MIR SINE MIR -118 144 37 202 111 0 28 chr9 127480692 127480728 -14790716 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 204 163 0 0 chr9 127481690 127481733 -14789711 + GA-rich Low_complexity Low_complexity 2 44 0 793 285 45 16 chr9 127531736 127532185 -14739259 + L1MEc LINE L1 1038 1499 -4897 431 244 16 0 chr9 127532175 127532302 -14739142 + L1MEc LINE L1 2279 2407 -3808 * 2228 93 13 3 chr9 127532331 127532631 -14738813 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr9 127532748 127532777 -14738667 + AT_rich Low_complexity Low_complexity 1 29 0 232 306 36 0 chr9 127532788 127532855 -14738589 - MIR SINE MIR -87 121 51 2472 28 18 3 chr9 127532959 127533245 -14738199 + AluY SINE Alu 1 290 -21 2750 88 99 7 chr9 127534090 127534512 -14736932 + MER4C LTR ERV1 1 461 -4 206 284 202 28 chr9 127535234 127535343 -14736101 - L2 LINE L2 -212 3060 2933 523 174 137 32 chr9 127536262 127536481 -14734963 + MER96B DNA MER1_type? 8 249 -168 284 220 102 0 chr9 127536599 127536658 -14734786 - MIR SINE MIR -115 147 83 369 327 98 7 chr9 127536927 127537080 -14734364 - MIR SINE MIR -5 257 91 2252 128 0 3 chr9 127537132 127537444 -14734000 + AluSx SINE Alu 1 311 -1 1741 146 9 70 chr9 127537486 127537802 -14733642 + AluJo SINE Alu 1 297 -15 357 324 44 16 chr9 127538111 127538293 -14733151 + MIR SINE MIR 58 244 -18 281 203 0 63 chr9 127538309 127538388 -14733056 + MIR SINE MIR 140 213 -49 701 268 68 30 chr9 127538551 127538786 -14732658 - MIR SINE MIR -1 261 18 606 289 51 47 chr9 127538844 127539097 -14732347 - MIR SINE MIR -7 255 2 1008 240 41 31 chr9 127539109 127539426 -14732018 - L2 LINE L2 -1207 2107 1788 1504 199 22 4 chr9 127539933 127540209 -14731235 - AluJo SINE Alu -19 293 13 374 96 96 14 chr9 127540258 127540331 -14731113 - AluJo SINE Alu -136 166 116 216 309 134 0 chr9 127540495 127540592 -14730852 - MIR SINE MIR -42 220 111 2247 113 0 22 chr9 127540594 127540912 -14730532 + AluSq SINE Alu 2 312 -1 1724 143 59 0 chr9 127540944 127541217 -14730227 + AluJo SINE Alu 1 289 -23 290 263 150 44 chr9 127541503 127541569 -14729875 + MIR SINE MIR 37 95 -167 2313 86 0 13 chr9 127541569 127541871 -14729573 - AluSx SINE Alu -12 300 3 290 263 150 44 chr9 127541871 127541964 -14729480 + MIR SINE MIR 95 213 -49 689 233 11 28 chr9 127541970 127542146 -14729298 - MER20 DNA MER1_type -5 214 42 1416 177 53 33 chr9 127542703 127542842 -14728602 + AluJo SINE Alu 1 136 -176 1914 141 7 7 chr9 127542842 127543140 -14728304 + AluJb SINE Alu 1 298 -14 1416 177 53 33 chr9 127543140 127543299 -14728145 + AluJo SINE Alu 136 305 -7 27 49 0 0 chr9 127543328 127543369 -14728075 + AT_rich Low_complexity Low_complexity 1 41 0 2318 93 0 10 chr9 127543423 127543725 -14727719 - AluSc SINE Alu -10 299 1 2059 88 78 3 chr9 127543792 127544075 -14727369 - AluSx SINE Alu -8 304 1 305 197 0 0 chr9 127544502 127544568 -14726876 + L1MC1 LINE L1 6072 6137 -196 3852 209 47 51 chr9 127544583 127546082 -14725362 + L1MCa LINE L1 2172 3663 -2763 1155 86 153 53 chr9 127546082 127546291 -14725153 + MER30 DNA MER1_type 1 230 0 3852 209 47 51 chr9 127546291 127546397 -14725047 + L1MCa LINE L1 3663 3768 -2658 1782 171 3 17 chr9 127546448 127546740 -14724704 - AluJo SINE Alu -24 288 1 8214 139 43 74 chr9 127546740 127546969 -14724475 + L1MA4 LINE L1 3201 3436 -2864 2270 107 10 0 chr9 127546969 127547277 -14724167 + AluSx SINE Alu 1 311 -1 8214 139 43 74 chr9 127547277 127547757 -14723687 + L1MA4 LINE L1 3436 3929 -2371 758 130 8 0 chr9 127547757 127547880 -14723564 + FLAM_C SINE Alu 18 141 -2 8214 139 43 74 chr9 127547880 127550250 -14721194 + L1MA4 LINE L1 3929 6289 -11 339 265 0 10 chr9 127550268 127550370 -14721074 + L1MCa LINE L1 3776 3876 -2550 1960 149 0 10 chr9 127550580 127550882 -14720562 - AluJb SINE Alu -13 299 1 294 371 84 11 chr9 127550912 127551090 -14720354 + MIR SINE MIR 37 227 -35 475 227 47 43 chr9 127551884 127552063 -14719381 + MIR SINE MIR 60 238 -24 528 221 66 0 chr9 127552606 127552728 -14718716 + MIR SINE MIR 5 134 -128 1471 195 30 10 chr9 127552934 127553231 -14718213 - AluJo SINE Alu -9 303 1 522 308 66 81 chr9 127553808 127554353 -14717091 + L2 LINE L2 2713 3240 -73 342 0 0 0 chr9 127554399 127554437 -14717007 + (CA)n Simple_repeat Simple_repeat 2 39 0 365 219 144 41 chr9 127554846 127554992 -14716452 + MIR SINE MIR 102 262 0 218 324 36 72 chr9 127555002 127555141 -14716303 - L2 LINE L2 -3 3269 3136 2380 138 8 40 chr9 127555387 127555451 -14715993 + L1MB3 LINE L1 5719 5783 -400 2380 144 23 36 chr9 127555451 127555889 -14715555 + MSTB1 LTR MaLR 1 432 0 2380 138 8 40 chr9 127555889 127556072 -14715372 + L1MB3 LINE L1 5783 5970 -213 2171 130 0 9 chr9 127556072 127556387 -14715057 + AluSq SINE Alu 1 312 -1 2380 138 8 40 chr9 127556387 127556618 -14714826 + L1MB3 LINE L1 5970 6183 0 180 0 0 0 chr9 127560172 127560192 -14711252 + (A)n Simple_repeat Simple_repeat 1 20 0 1087 184 35 0 chr9 127561258 127561459 -14709985 - MER3 DNA MER1_type -1 208 1 450 308 50 11 chr9 127561892 127562074 -14709370 + MIR SINE MIR 74 262 0 503 301 64 10 chr9 127562919 127563128 -14708316 + MIR SINE MIR 33 250 -12 235 313 45 0 chr9 127563888 127563955 -14707489 + MIR SINE MIR 60 129 -79 206 128 26 0 chr9 127564118 127564157 -14707287 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 252 260 198 0 chr9 127564262 127564358 -14707086 - L2 LINE L2 -2 3311 3197 1506 164 31 65 chr9 127564414 127564737 -14706707 + AluJb SINE Alu 1 312 0 2146 147 0 0 chr9 127565796 127566102 -14705342 - AluJb SINE Alu -6 306 1 359 296 0 0 chr9 127566218 127566306 -14705138 - L2 LINE L2 -1 3312 3225 276 286 116 18 chr9 127566384 127566496 -14704948 + MIR SINE MIR 108 230 -32 2190 97 10 3 chr9 127566563 127566851 -14704593 - AluSg1 SINE Alu -16 293 4 230 284 15 0 chr9 127567400 127567467 -14703977 - L1ME4a LINE L1 -83 6038 5971 2457 130 73 7 chr9 127567500 127567924 -14703520 - Tigger2 DNA MER2_type 0 2718 2267 459 145 0 0 chr9 127567908 127567977 -14703467 - Tigger2 DNA MER2_type -2649 69 1 * 280 230 43 50 chr9 127567986 127568125 -14703319 - L1ME4a LINE L1 -3 6118 5981 293 294 0 0 chr9 127568215 127568317 -14703127 - L1ME4a LINE L1 -370 5751 5650 185 244 67 0 chr9 127568890 127568935 -14702509 - L2 LINE L2 -3 3310 3263 1421 108 0 0 chr9 127569244 127569420 -14702024 - AluSx SINE Alu -136 176 1 184 182 0 0 chr9 127569452 127569485 -14701959 + L2 LINE L2 3276 3308 -5 1517 192 16 39 chr9 127569621 127569929 -14701515 + AluJo SINE Alu 1 301 -11 340 315 151 30 chr9 127570175 127570473 -14700971 - L2 LINE L2 -420 2894 2561 1651 121 65 0 chr9 127570480 127570770 -14700674 + L1MB2 LINE L1 5830 6138 -33 1860 233 108 24 chr9 127571341 127571858 -14699586 - L1ME3 LINE L1 -1 6161 5566 2343 88 0 0 chr9 127571858 127572153 -14699291 + AluSg SINE Alu 1 295 -15 1860 233 108 24 chr9 127572153 127572349 -14699095 - L1ME3 LINE L1 -596 5566 5388 1639 167 4 22 chr9 127572563 127572833 -14698611 + AluJo SINE Alu 1 265 -47 321 200 0 0 chr9 127573025 127573080 -14698364 + FLAM_A SINE Alu 2 56 -77 812 244 70 0 chr9 127573495 127573696 -14697748 + MIR SINE MIR 48 262 0 946 233 42 53 chr9 127573867 127574129 -14697315 + MIR SINE MIR 4 262 0 405 287 147 22 chr9 127574815 127574951 -14696493 + L2 LINE L2 3112 3264 -8 1841 163 3 17 chr9 127576786 127577086 -14694358 - AluJb SINE Alu -16 296 1 448 224 54 34 chr9 127577098 127577245 -14694199 - L1ME3 LINE L1 -8 6154 6005 619 176 109 8 chr9 127578458 127578577 -14692867 + FLAM_A SINE Alu 1 131 -2 1947 149 3 23 chr9 127579132 127579441 -14692003 + AluSx SINE Alu 1 303 -9 411 137 0 0 chr9 127579588 127579661 -14691783 + (TG)n Simple_repeat Simple_repeat 2 74 0 4310 159 57 38 chr9 127580266 127580862 -14690582 + Charlie1a DNA MER1_type 1 584 -2177 2311 120 0 0 chr9 127580862 127581163 -14690281 - AluSg SINE Alu -9 301 1 4310 159 57 38 chr9 127581163 127581492 -14689952 + Charlie1a DNA MER1_type 584 905 -1856 272 0 114 0 chr9 127581492 127581536 -14689908 + T-rich Low_complexity Low_complexity 1 180 0 2183 87 0 24 chr9 127581536 127581825 -14689619 - AluSq SINE Alu -1 325 1 4310 159 57 38 chr9 127581825 127582308 -14689136 + Charlie1a DNA MER1_type 904 1455 0 1702 190 24 0 chr9 127582452 127582742 -14688702 + AluJo SINE Alu 6 302 -10 225 164 73 18 chr9 127582742 127582797 -14688647 + GA-rich Low_complexity Low_complexity 1 58 0 198 338 14 42 chr9 127582800 127582871 -14688573 - MIR3 SINE MIR -136 72 4 2334 99 3 0 chr9 127583036 127583330 -14688114 + AluSq SINE Alu 2 296 -17 401 216 105 42 chr9 127583333 127583453 -14687991 - MIR SINE MIR -61 147 40 186 309 106 11 chr9 127584593 127584687 -14686757 + MIR3 SINE MIR 60 162 -46 332 327 75 0 chr9 127584718 127584825 -14686619 - MER5A DNA MER1_type -22 167 53 1598 185 0 17 chr9 127584866 127585153 -14686291 - AluJb SINE Alu -30 282 1 1994 130 3 7 chr9 127586228 127586528 -14684916 - AluJb SINE Alu -13 299 1 1523 163 54 34 chr9 127586631 127586811 -14684633 - AluJo SINE Alu -8 304 114 264 30 0 0 chr9 127586811 127586844 -14684600 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1523 163 54 34 chr9 127586844 127586957 -14684487 - AluJo SINE Alu -198 114 5 1551 142 78 7 chr9 127587379 127587563 -14683881 - MER44D DNA MER2_type -1904 587 418 1812 156 10 26 chr9 127587563 127587870 -14683574 + AluJo SINE Alu 1 302 -10 1551 142 78 7 chr9 127587870 127587980 -14683464 - MER44D DNA MER2_type -2073 418 2 301 200 78 22 chr9 127588410 127588500 -14682944 - MIR SINE MIR -51 211 117 549 210 141 3 chr9 127588734 127588878 -14682566 - MIR SINE MIR -36 172 5 205 237 34 17 chr9 127589121 127589180 -14682264 - MIR SINE MIR -99 163 104 220 369 55 84 chr9 127589206 127589480 -14681964 + L2 LINE L2 2919 3184 -88 858 184 33 0 chr9 127590065 127590217 -14681227 - FRAM SINE Alu -8 158 2 243 304 217 17 chr9 127591498 127591613 -14679831 + MIR3 SINE MIR 10 147 -61 564 263 129 19 chr9 127592654 127592863 -14678581 + MIR SINE MIR 31 262 0 23 86 0 0 chr9 127593698 127593756 -14677688 + AT_rich Low_complexity Low_complexity 1 58 0 294 353 8 17 chr9 127594454 127594573 -14676871 + MER5B DNA MER1_type 1 118 -60 1887 126 43 20 chr9 127594892 127595193 -14676251 - AluSx SINE Alu -4 308 1 2025 147 3 0 chr9 127596044 127596343 -14675101 - AluSx SINE Alu -10 302 3 1059 98 0 0 chr9 127596348 127596481 -14674963 - AluSq/x SINE Alu -180 133 1 181 290 47 47 chr9 127596567 127596674 -14674770 - L2 LINE L2 -832 2482 2376 234 312 120 60 chr9 127596947 127597197 -14674247 - L2 LINE L2 -191 3081 2817 571 240 158 31 chr9 127597285 127597481 -14673963 + MIR SINE MIR 12 232 -30 253 294 77 7 chr9 127597583 127597726 -14673718 + L1ME4a LINE L1 5967 6119 -2 319 47 0 0 chr9 127597749 127597792 -14673652 + U5 snRNA snRNA 2 44 -72 240 280 93 84 chr9 127598526 127598633 -14672811 + MIR SINE MIR 37 144 -64 2318 196 76 71 chr9 127599145 127599380 -14672064 - L1MB7 LINE L1 -10 6174 5942 1803 133 31 34 chr9 127599380 127599673 -14671771 - AluSx SINE Alu -20 292 1 2318 196 76 71 chr9 127599673 127599727 -14671717 - L1MB7 LINE L1 -242 5942 5890 2052 108 0 82 chr9 127599727 127600042 -14671402 - AluSx SINE Alu -21 291 3 2318 196 76 71 chr9 127600042 127600278 -14671166 - L1MB7 LINE L1 -294 5890 5657 2248 128 0 0 chr9 127600278 127600584 -14670860 - AluSx SINE Alu -6 306 1 2318 196 76 71 chr9 127600584 127600909 -14670535 - L1MB7 LINE L1 -527 5657 5335 1266 144 84 4 chr9 127600909 127601159 -14670285 - L1MB4 LINE L1 -1 6179 5910 2318 196 76 71 chr9 127601159 127601250 -14670194 - L1MB7 LINE L1 -849 5335 5246 2316 91 0 3 chr9 127601250 127601548 -14669896 - AluSq SINE Alu -16 297 1 2318 196 76 71 chr9 127601548 127602005 -14669439 - L1MB7 LINE L1 -938 5246 4770 2051 178 64 0 chr9 127602005 127602398 -14669046 + MSTB LTR MaLR 1 418 -8 2079 135 7 20 chr9 127602425 127602728 -14668716 - AluSx SINE Alu -13 299 1 1767 160 23 7 chr9 127602731 127603031 -14668413 - AluJo SINE Alu -7 305 1 801 272 37 11 chr9 127603076 127603348 -14668096 - L1MB7 LINE L1 -2302 3844 3566 1732 141 20 36 chr9 127603836 127604140 -14667304 + AluJo SINE Alu 1 299 -13 2430 73 3 3 chr9 127604258 127604559 -14666885 + AluSp SINE Alu 1 301 -12 1038 188 6 0 chr9 127604779 127604949 -14666495 - AluJb SINE Alu -22 290 120 1287 82 0 6 chr9 127605698 127605903 -14665541 - AluSg/x SINE Alu 0 318 115 2103 96 3 20 chr9 127606003 127606296 -14665148 + AluY SINE Alu 23 310 -1 2060 139 3 3 chr9 127606326 127606627 -14664817 + AluSg SINE Alu 1 301 -9 685 119 18 9 chr9 127608535 127608644 -14662800 - AluJb SINE Alu -194 118 9 780 245 88 47 chr9 127609992 127610376 -14661068 - L1ME4a LINE L1 -71 6050 1230 791 244 91 18 chr9 127610405 127610626 -14660818 + MIR SINE MIR 15 251 -11 294 159 28 47 chr9 127611180 127611287 -14660157 + (TA)n Simple_repeat Simple_repeat 2 106 0 1435 155 114 19 chr9 127611318 127611582 -14659862 + AluJb SINE Alu 2 290 -22 279 270 117 24 chr9 127612267 127612434 -14659010 - MIR SINE MIR -27 235 51 22 56 0 0 chr9 127613302 127613338 -14658106 + AT_rich Low_complexity Low_complexity 1 36 0 646 252 20 120 chr9 127613874 127613958 -14657486 + MER102b DNA MER1_type 34 125 -1303 2137 109 3 14 chr9 127613958 127614251 -14657193 + AluSq SINE Alu 1 290 -23 646 252 20 120 chr9 127614251 127614391 -14657053 + MER102b DNA MER1_type 125 215 -1213 1711 164 11 7 chr9 127614391 127614672 -14656772 - AluJb SINE Alu -30 282 1 646 252 20 120 chr9 127614672 127614787 -14656657 + MER102b DNA MER1_type 215 340 -1 32 0 0 0 chr9 127614901 127614933 -14656511 + AT_rich Low_complexity Low_complexity 1 32 0 1595 133 109 8 chr9 127614935 127615191 -14656253 + AluJb SINE Alu 1 282 -30 1254 118 0 21 chr9 127615318 127615505 -14655939 + AluJb SINE Alu 129 311 -1 200 331 166 0 chr9 127616152 127616297 -14655147 + MIR SINE MIR 52 220 -42 647 218 160 24 chr9 127616368 127616574 -14654870 - MIR SINE MIR -10 252 19 2661 227 84 45 chr9 127616576 127617372 -14654072 - L1ME2 LINE L1 -1 6163 5400 1950 162 0 16 chr9 127617372 127617686 -14653758 + AluSx SINE Alu 1 309 -3 2661 227 84 45 chr9 127617686 127618092 -14653352 - L1ME2 LINE L1 -764 5400 5011 1932 149 0 7 chr9 127618092 127618388 -14653056 - AluJb SINE Alu -18 294 1 2661 227 84 45 chr9 127618388 127618746 -14652698 - L1ME2 LINE L1 -1153 5011 4668 1629 183 0 53 chr9 127618746 127619068 -14652376 - AluJo SINE Alu -7 305 1 2661 227 84 45 chr9 127619068 127619089 -14652355 - L1ME2 LINE L1 -1496 4668 4649 2225 106 0 13 chr9 127619089 127619391 -14652053 - AluSc SINE Alu -11 298 1 2661 227 84 45 chr9 127619391 127619864 -14651580 - L1ME2 LINE L1 -1515 4649 4029 4984 196 59 7 chr9 127619898 127621264 -14650180 - L1MB3 LINE L1 -9 6174 4726 592 208 51 93 chr9 127621265 127621577 -14649867 - L1ME2 LINE L1 -2120 4026 3728 2006 139 3 0 chr9 127621641 127621936 -14649508 - AluSx SINE Alu -16 296 1 613 196 0 0 chr9 127622356 127622463 -14648981 + FLAM_A SINE Alu 20 126 -16 252 0 0 0 chr9 127623047 127623075 -14648369 + (T)n Simple_repeat Simple_repeat 1 28 0 204 40 0 0 chr9 127623843 127623868 -14647576 + (TG)n Simple_repeat Simple_repeat 2 26 0 2112 106 3 39 chr9 127624297 127624609 -14646835 - AluSq SINE Alu -10 303 3 265 264 28 28 chr9 127625835 127625941 -14645503 + L1M4 LINE L1 432 537 -6318 1885 241 99 36 chr9 127626513 127627447 -14643997 + L1M4 LINE L1 1210 2083 -4874 2087 98 10 24 chr9 127627447 127627743 -14643701 + AluSc SINE Alu 1 292 -17 1885 241 99 36 chr9 127627743 127628192 -14643252 + L1M4 LINE L1 2083 2502 -4455 2219 104 7 0 chr9 127628192 127628480 -14642964 + AluSx SINE Alu 6 295 -17 1885 241 99 36 chr9 127628480 127629095 -14642349 + L1M4 LINE L1 2502 3479 -3478 665 194 62 95 chr9 127629100 127629227 -14642217 + L1M4 LINE L1 3609 3739 -3218 1696 148 18 4 chr9 127629227 127629504 -14641940 + AluJb SINE Alu 1 281 -31 665 194 62 95 chr9 127629504 127629701 -14641743 + L1M4 LINE L1 3739 3922 -3035 853 136 0 0 chr9 127629724 127629842 -14641602 + FRAM SINE Alu 37 154 -22 824 254 55 6 chr9 127629843 127630154 -14641290 + L1M4 LINE L1 3900 4225 -2732 2296 110 0 0 chr9 127630483 127630783 -14640661 + AluSg SINE Alu 1 300 -10 339 179 30 0 chr9 127630862 127630929 -14640515 + Tigger2 DNA MER2_type 1 69 -2649 * 2453 139 52 2 chr9 127630919 127631344 -14640100 + Tigger2 DNA MER2_type 2273 2718 0 2360 100 0 0 chr9 127632091 127632390 -14639054 - AluSq SINE Alu -14 299 1 379 284 147 5 chr9 127632838 127633028 -14638416 + MIR SINE MIR 30 246 -16 291 299 39 24 chr9 127633639 127633766 -14637678 + L2 LINE L2 3172 3300 -13 2149 142 0 0 chr9 127633805 127634115 -14637329 + AluSx SINE Alu 2 311 -1 1959 117 4 7 chr9 127634241 127634514 -14636930 - AluSx SINE Alu -18 294 23 211 328 0 0 chr9 127634745 127634806 -14636638 + L2 LINE L2 3138 3198 -74 993 175 116 6 chr9 127635097 127635391 -14636053 - MLT1A1 LTR MaLR 0 365 1 273 345 86 0 chr9 127635771 127635887 -14635557 + MLT1K LTR MaLR 3 128 -460 313 218 24 73 chr9 127635896 127635954 -14635490 + MIR SINE MIR 134 184 -78 1985 146 7 7 chr9 127635954 127636249 -14635195 + AluJb SINE Alu 1 295 -17 313 218 24 73 chr9 127636249 127636314 -14635130 + MIR SINE MIR 184 251 -11 2146 118 3 0 chr9 127636976 127637272 -14634172 + AluSx SINE Alu 1 297 -15 628 106 11 11 chr9 127637272 127637366 -14634078 + AluSq/x SINE Alu 43 136 -177 2180 112 0 0 chr9 127637366 127637671 -14633773 + AluSg SINE Alu 1 310 0 2096 113 0 39 chr9 127637979 127638115 -14633329 + AluSx SINE Alu 1 141 -171 2153 110 7 13 chr9 127638115 127638423 -14633021 + AluSg SINE Alu 1 306 -4 2096 113 0 39 chr9 127638423 127638596 -14632848 + AluSx SINE Alu 141 298 -14 991 167 0 6 chr9 127638850 127639006 -14632438 - AluJb SINE Alu -16 296 142 182 281 45 34 chr9 127639492 127639581 -14631863 + L2 LINE L2 2873 2962 -352 993 176 80 0 chr9 127640435 127640611 -14630833 + MER3 DNA MER1_type 2 191 -18 596 103 11 0 chr9 127640928 127641015 -14630429 + L1MB4 LINE L1 6087 6174 -6 373 308 51 13 chr9 127641115 127641271 -14630173 + MIR3 SINE MIR 12 173 -35 2373 87 10 0 chr9 127641673 127641983 -14629461 + AluSp SINE Alu 1 313 0 2314 100 0 7 chr9 127641987 127642297 -14629147 + AluY SINE Alu 1 308 -3 1799 137 32 57 chr9 127643337 127643652 -14627792 + AluJb SINE Alu 1 307 -5 235 100 250 0 chr9 127644385 127644445 -14626999 + L1ME4a LINE L1 5596 5670 -451 294 281 161 0 chr9 127644451 127644650 -14626794 + L1ME4a LINE L1 5718 5948 -173 2459 77 3 0 chr9 127644782 127645082 -14626362 + AluSp SINE Alu 1 301 -12 2091 104 10 26 chr9 127645093 127645402 -14626042 + AluSx SINE Alu 1 304 -8 2253 116 3 0 chr9 127645700 127646003 -14625441 + AluSx SINE Alu 2 305 -7 181 304 38 51 chr9 127646179 127646258 -14625186 - L2 LINE L2 -8 3264 3187 1040 158 0 29 chr9 127646580 127646751 -14624693 - AluJb SINE Alu -10 302 137 327 302 54 58 chr9 127646887 127647129 -14624315 + L2 LINE L2 2231 2471 -843 400 246 36 29 chr9 127647931 127647971 -14623473 + MIR SINE MIR 124 162 -100 2576 49 0 16 chr9 127647971 127648276 -14623168 + AluY SINE Alu 1 300 -11 400 246 36 29 chr9 127648276 127648373 -14623071 + MIR SINE MIR 162 262 0 2338 94 3 3 chr9 127648373 127648671 -14622773 + AluSp SINE Alu 1 298 -15 1021 166 12 0 chr9 127648951 127649114 -14622330 - FAM SINE Alu -6 169 5 2416 50 0 0 chr9 127649872 127650180 -14621264 + AluY SINE Alu 1 308 0 282 275 214 8 chr9 127650380 127650511 -14620933 + MIR SINE MIR 20 177 -85 2054 134 7 7 chr9 127651386 127651692 -14619752 + AluSx SINE Alu 5 310 -2 29 90 0 0 chr9 127651722 127651800 -14619644 + AT_rich Low_complexity Low_complexity 1 78 0 22 35 0 0 chr9 127651866 127651895 -14619549 + AT_rich Low_complexity Low_complexity 1 29 0 229 230 40 27 chr9 127652288 127652362 -14619082 + GA-rich Low_complexity Low_complexity 4 78 0 189 283 38 0 chr9 127652397 127652450 -14618994 + MIR SINE MIR 89 143 -65 1064 219 194 18 chr9 127652469 127652912 -14618532 - MER113 DNA MER1_type? 0 521 1 266 258 164 23 chr9 127652950 127653078 -14618366 + MIR SINE MIR 111 256 -6 2176 122 0 3 chr9 127659152 127659448 -14611996 + AluSg SINE Alu 1 295 -15 1885 126 0 0 chr9 127659462 127659733 -14611711 + AluSx SINE Alu 40 310 -2 347 215 255 0 chr9 127660008 127660157 -14611287 + MIR SINE MIR 74 260 -2 181 245 122 0 chr9 127660162 127660211 -14611233 - MIR SINE MIR -73 135 81 3959 178 63 8 chr9 127661548 127662424 -14609020 - Charlie1 DNA MER1_type -24 2737 1814 3285 185 88 10 chr9 127662801 127663503 -14607941 - Charlie1a DNA MER1_type -698 757 1 2394 104 0 0 chr9 127663905 127664212 -14607232 + AluSx SINE Alu 2 308 -4 228 67 0 0 chr9 127667508 127667538 -14603906 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr9 127669250 127669271 -14602173 + AT_rich Low_complexity Low_complexity 1 21 0 215 276 17 35 chr9 127670632 127670748 -14600696 + G-rich Low_complexity Low_complexity 4 117 0 192 149 0 0 chr9 127671020 127671067 -14600377 + (CCGCG)n Simple_repeat Simple_repeat 1 47 0 218 109 174 0 chr9 127671794 127671840 -14599604 + MIR3 SINE MIR 104 157 -51 194 255 61 92 chr9 127672586 127672684 -14598760 + L2 LINE L2 2992 3086 -186 2383 92 3 0 chr9 127672773 127673079 -14598365 + AluSp SINE Alu 2 308 -5 269 253 24 24 chr9 127673370 127673453 -14597991 + L2 LINE L2 3190 3272 0 284 276 98 43 chr9 127673466 127673629 -14597815 + MIR SINE MIR 86 257 -5 205 331 52 7 chr9 127673768 127673904 -14597540 - MIR SINE MIR -17 245 104 442 136 0 62 chr9 127674055 127674136 -14597308 + AluS SINE Alu 2 77 -236 268 253 116 47 chr9 127674136 127674326 -14597118 - L2 LINE L2 -266 3006 2804 2380 87 0 3 chr9 127674706 127675006 -14596438 + AluSg SINE Alu 5 303 -7 592 182 33 8 chr9 127675097 127675218 -14596226 - MER5A DNA MER1_type 0 189 66 1183 134 12 0 chr9 127675218 127675389 -14596055 - AluSg/x SINE Alu -6 304 132 1521 105 9 22 chr9 127675390 127675619 -14595825 - AluSg/x SINE Alu -2 308 83 395 176 27 0 chr9 127675619 127675693 -14595751 - MER5A DNA MER1_type -113 76 1 1456 203 28 0 chr9 127675816 127676107 -14595337 + AluJo SINE Alu 1 299 -13 1751 161 0 25 chr9 127676108 127676387 -14595057 + AluJb SINE Alu 2 273 -39 309 259 56 0 chr9 127676584 127676692 -14594752 - MIR SINE MIR -70 192 79 22 0 0 0 chr9 127676838 127676860 -14594584 + GC_rich Low_complexity Low_complexity 1 22 0 202 246 18 0 chr9 127677040 127677097 -14594347 + (CTG)n Simple_repeat Simple_repeat 1 58 0 190 335 110 30 chr9 127677655 127677844 -14593600 + MIR SINE MIR 14 221 -41 2665 36 0 7 chr9 127677844 127678151 -14593293 + AluY SINE Alu 1 305 -6 1153 131 0 0 chr9 127678198 127678351 -14593093 + AluSx SINE Alu 1 153 -159 * 1360 148 0 41 chr9 127678350 127678593 -14592851 + AluSg/x SINE Alu 78 310 0 380 237 11 0 chr9 127678936 127679029 -14592415 + MIR SINE MIR 48 141 -67 2236 108 3 0 chr9 127681278 127681574 -14589870 + AluSx SINE Alu 1 297 -15 227 258 0 0 chr9 127682023 127682089 -14589355 + MIR SINE MIR 81 146 -62 410 280 116 18 chr9 127682178 127682397 -14589047 - MIR SINE MIR -20 242 10 1961 124 40 0 chr9 127682956 127683234 -14588210 + AluJb SINE Alu 1 286 -26 503 226 161 0 chr9 127683253 127683408 -14588036 - MIR SINE MIR 0 262 83 844 278 101 23 chr9 127683467 127683918 -14587526 - L2 LINE L2 -2 3311 2777 2273 88 3 25 chr9 127683952 127684269 -14587175 - AluSx SINE Alu -2 310 1 2513 145 40 55 chr9 127684362 127684710 -14586734 - L1MB5 LINE L1 -25 6149 5797 2161 126 0 0 chr9 127684710 127685020 -14586424 - AluSx SINE Alu -2 310 1 2513 145 40 55 chr9 127685020 127685153 -14586291 - L1MB5 LINE L1 -377 5797 5674 2592 42 0 10 chr9 127685153 127685466 -14585978 - AluY SINE Alu -1 310 1 2513 145 40 55 chr9 127685466 127685527 -14585917 - L1MB5 LINE L1 -500 5674 5614 360 145 40 13 chr9 127685627 127685703 -14585741 - AluS SINE Alu -223 78 1 611 161 27 0 chr9 127685704 127685827 -14585617 - L1M4 LINE L1 -497 5677 5552 1635 183 4 0 chr9 127685838 127686117 -14585327 + AluJo SINE Alu 3 282 -30 207 0 0 0 chr9 127686120 127686143 -14585301 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1909 146 0 0 chr9 127686144 127686432 -14585012 + AluJb SINE Alu 1 288 -24 2427 48 0 3 chr9 127686442 127686736 -14584708 + AluY SINE Alu 1 293 -18 441 0 0 0 chr9 127686753 127686802 -14584642 + (CA)n Simple_repeat Simple_repeat 2 50 0 354 260 125 0 chr9 127687322 127687426 -14584018 - MIR SINE MIR -90 172 56 2080 112 3 0 chr9 127687526 127687862 -14583582 - AluSx SINE Alu 0 337 1 343 270 40 0 chr9 127687869 127687969 -14583475 - MIR SINE MIR -77 185 82 2153 109 0 3 chr9 127688022 127688325 -14583119 + AluSx SINE Alu 1 302 -10 2067 107 0 4 chr9 127688329 127688637 -14582807 + AluSg SINE Alu 1 307 0 212 305 0 0 chr9 127688703 127688762 -14582682 - MER91A DNA MER1_type -73 123 65 249 288 0 14 chr9 127688819 127688892 -14582552 - MIR SINE MIR -190 72 1 1803 178 10 0 chr9 127688925 127689228 -14582216 - AluJo SINE Alu -1 311 6 1848 209 115 5 chr9 127689297 127689713 -14581731 - LTR40b LTR ERVL 0 462 1 397 253 37 74 chr9 127690044 127690177 -14581267 - MIR SINE MIR -66 196 69 1843 114 7 31 chr9 127690177 127690466 -14580978 - AluSx SINE Alu -18 294 13 397 253 37 74 chr9 127690466 127690494 -14580950 - MIR SINE MIR -193 69 41 226 266 182 44 chr9 127691057 127691260 -14580184 - L2 LINE L2 -85 3187 2957 1058 236 61 35 chr9 127691338 127691458 -14579986 - MER5C DNA MER1_type 0 324 209 2173 118 0 3 chr9 127691458 127691771 -14579673 + AluSx SINE Alu 1 312 0 1058 236 61 35 chr9 127691771 127691963 -14579481 - MER5C DNA MER1_type -115 209 4 278 368 28 7 chr9 127691972 127692116 -14579328 + L2 LINE L2 2907 3053 -219 416 261 45 0 chr9 127693557 127693668 -14577776 + MIR SINE MIR 49 164 -98 549 284 34 51 chr9 127693669 127693747 -14577697 - LTR16A1 LTR ERVL -1 456 378 1511 182 26 42 chr9 127693747 127694060 -14577384 + AluJo SINE Alu 1 308 -4 549 284 34 51 chr9 127694060 127694304 -14577140 - LTR16A1 LTR ERVL -79 378 156 357 277 11 0 chr9 127694417 127694511 -14576933 + MIR SINE MIR 156 250 -12 2190 122 0 0 chr9 127694614 127694925 -14576519 - AluSx SINE Alu -1 311 1 1997 99 49 0 chr9 127695500 127695784 -14575660 + AluSx SINE Alu 1 298 -14 1167 161 18 40 chr9 127696739 127696963 -14574481 + MER20 DNA MER1_type 1 219 0 1576 168 84 3 chr9 127696999 127697284 -14574160 - AluJb SINE Alu -4 308 1 461 260 46 30 chr9 127697327 127697502 -14573942 - MIR SINE MIR -63 145 19 1863 117 3 55 chr9 127698223 127698531 -14572913 + AluSx SINE Alu 1 292 -20 1239 103 6 6 chr9 127698555 127698730 -14572714 + AluSq SINE Alu 1 175 -138 246 128 0 0 chr9 127698730 127698769 -14572675 + (A)n Simple_repeat Simple_repeat 1 39 0 316 338 38 13 chr9 127698769 127698926 -14572518 + L1MC4a LINE L1 5752 5912 -1896 380 313 18 18 chr9 127700203 127700315 -14571129 - MER91A DNA MER1_type -84 112 1 255 250 0 26 chr9 127700462 127700538 -14570906 - MIR SINE MIR -116 92 19 658 167 0 26 chr9 127700892 127701006 -14570438 + MER81 DNA DNA 3 113 -1 303 337 11 0 chr9 127701981 127702076 -14569368 - L2 LINE L2 -86 3186 3091 2167 115 0 0 chr9 127702916 127703212 -14568232 - AluSq SINE Alu -17 296 1 1953 147 0 6 chr9 127703256 127703568 -14567876 - AluJb SINE Alu -2 310 1 258 95 0 0 chr9 127704256 127704298 -14567146 + (CCA)n Simple_repeat Simple_repeat 1 42 0 377 238 12 12 chr9 127704360 127704444 -14567000 + MER58 DNA MER1_type 1 84 -131 1936 105 4 0 chr9 127704445 127704712 -14566732 + AluSq SINE Alu 1 268 -45 2026 113 27 0 chr9 127704714 127705006 -14566438 - AluSx SINE Alu -12 300 1 537 297 94 36 chr9 127705177 127705591 -14565853 + L1ME4a LINE L1 5550 5987 -134 1027 133 13 0 chr9 127705616 127705774 -14565670 + L1PB2 LINE L1 5989 6148 -3 1709 125 0 8 chr9 127705805 127706061 -14565383 - AluSx SINE Alu 0 312 59 212 175 0 0 chr9 127706181 127706221 -14565223 + A-rich Low_complexity Low_complexity 1 40 0 1369 128 167 17 chr9 127706297 127706585 -14564859 - L1MA8 LINE L1 -24 6267 5937 1945 114 44 3 chr9 127706615 127706912 -14564532 - AluSg SINE Alu -1 309 1 1791 159 0 32 chr9 127706914 127707228 -14564216 - AluJo SINE Alu -8 304 1 2010 114 23 10 chr9 127707279 127707587 -14563857 - AluSq SINE Alu -1 312 1 226 258 45 0 chr9 127708170 127708236 -14563208 - L2 LINE L2 -38 3234 3166 193 294 186 0 chr9 127708274 127708376 -14563068 - MIR SINE MIR -12 250 130 566 333 50 31 chr9 127708508 127708829 -14562615 - L2 LINE L2 -96 3176 2850 2095 108 0 35 chr9 127708878 127709192 -14562252 + AluSx SINE Alu 1 303 -9 528 287 10 20 chr9 127709348 127709543 -14561901 - L2 LINE L2 -173 3099 2907 184 342 167 0 chr9 127709546 127709660 -14561784 + MIR SINE MIR 47 179 -83 355 308 49 14 chr9 127710588 127710731 -14560713 - MIR SINE MIR -24 238 91 310 286 116 0 chr9 127711812 127711924 -14559520 - MIR3 SINE MIR -21 187 63 2333 67 3 3 chr9 127712167 127712465 -14558979 - AluSq SINE Alu -15 298 1 253 287 66 49 chr9 127712922 127712944 -14558500 - MIR SINE MIR -94 168 148 2182 113 13 0 chr9 127712944 127713253 -14558191 - AluSq SINE Alu 0 313 1 253 287 66 49 chr9 127713253 127713352 -14558092 - MIR SINE MIR -114 148 45 338 247 200 0 chr9 127713356 127713506 -14557938 - MIR SINE MIR -3 259 80 198 0 0 0 chr9 127713866 127713888 -14557556 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 200 192 55 41 chr9 127714268 127714341 -14557103 + MIR3 SINE MIR 2 75 -133 366 333 39 19 chr9 127714456 127714612 -14556832 - MIR SINE MIR -76 186 28 444 194 0 0 chr9 127714964 127715036 -14556408 + AluSx SINE Alu 2 73 -239 1481 92 33 42 chr9 127715183 127715423 -14556021 + AluSx SINE Alu 73 310 0 1023 128 0 6 chr9 127715520 127715676 -14555768 + AluJo SINE Alu 1 155 -157 24 0 0 0 chr9 127715676 127715700 -14555744 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr9 127715948 127715975 -14555469 + (A)n Simple_repeat Simple_repeat 1 27 0 2398 66 0 3 chr9 127715979 127716284 -14555160 + AluY SINE Alu 1 304 -7 427 260 54 117 chr9 127716350 127716684 -14554760 + MER113 DNA MER1_type? 4 303 -218 2270 92 16 0 chr9 127716684 127716988 -14554456 + AluSx SINE Alu 1 309 -3 427 260 54 117 chr9 127716988 127717114 -14554330 + MER113 DNA MER1_type? 303 435 -86 1207 184 0 5 chr9 127717571 127717777 -14553667 + AluJb SINE Alu 7 211 -101 2127 114 0 0 chr9 127717794 127718091 -14553353 - AluSx SINE Alu -15 297 1 192 313 168 38 chr9 127718107 127718238 -14553206 + L2 LINE L2 3116 3263 -9 535 290 45 23 chr9 127719318 127719494 -14551950 - MIR SINE MIR -21 241 62 286 263 63 11 chr9 127719543 127719638 -14551806 + MER5B DNA MER1_type 13 112 -66 1619 166 3 11 chr9 127719652 127719970 -14551474 - AluJb SINE Alu 0 316 1 1995 129 7 0 chr9 127719982 127720277 -14551167 - AluSg SINE Alu -13 297 1 1085 81 0 0 chr9 127720277 127720413 -14551031 - AluSq/x SINE Alu -176 136 1 206 264 0 0 chr9 127720426 127720479 -14550965 - MER5B DNA MER1_type -125 53 1 395 229 45 156 chr9 127721340 127721451 -14549993 + MIR SINE MIR 34 156 -106 232 48 48 0 chr9 127721451 127721493 -14549951 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1756 129 41 0 chr9 127721495 127721766 -14549678 - AluSg SINE Alu -24 286 5 395 229 45 156 chr9 127721766 127721895 -14549549 + MIR SINE MIR 157 250 -12 216 314 51 34 chr9 127722241 127722359 -14549085 + L2 LINE L2 2600 2719 -595 1641 182 0 32 chr9 127722359 127722667 -14548777 + AluJo SINE Alu 1 298 -14 2028 134 7 0 chr9 127722671 127722969 -14548475 + AluSx SINE Alu 1 300 -12 2232 109 0 0 chr9 127723018 127723320 -14548124 + AluSg SINE Alu 1 302 -8 1045 138 12 0 chr9 127723321 127723481 -14547963 - MSTA LTR MaLR -266 162 1 2100 109 0 10 chr9 127723803 127724107 -14547337 - AluSx SINE Alu -11 301 1 995 133 0 0 chr9 127724112 127724263 -14547181 - FRAM SINE Alu -17 159 9 3272 188 48 58 chr9 127724322 127724591 -14546853 - L1MD3 LINE L1 0 8042 7772 2030 126 17 0 chr9 127724591 127724885 -14546559 + AluSx SINE Alu 1 299 -13 3272 188 48 58 chr9 127724885 127724955 -14546489 - L1MD3 LINE L1 -270 7772 7703 1929 151 0 19 chr9 127724955 127725272 -14546172 - AluSx SINE Alu -1 311 1 3272 188 48 58 chr9 127725272 127725636 -14545808 - L1MD3 LINE L1 -339 7703 7359 1544 160 0 54 chr9 127725636 127725822 -14545622 - AluJb SINE Alu -7 305 139 1152 92 0 0 chr9 127725822 127725985 -14545459 + (TA)n Simple_repeat Simple_repeat 2 164 0 1544 160 0 54 chr9 127725985 127726092 -14545352 - AluJb SINE Alu -173 139 28 3272 188 48 58 chr9 127726092 127726290 -14545154 - L1MD3 LINE L1 -683 7359 7161 1542 118 9 0 chr9 127726292 127726512 -14544932 + AluJb SINE Alu 3 224 -88 244 274 0 16 chr9 127726790 127726852 -14544592 + L2 LINE L2 3203 3263 -9 204 262 155 0 chr9 127727060 127727144 -14544300 - MIR SINE MIR 0 262 166 2210 110 0 0 chr9 127727151 127727451 -14543993 + AluSx SINE Alu 1 300 -12 246 105 0 0 chr9 127727550 127727588 -14543856 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2051 129 0 0 chr9 127727695 127727989 -14543455 - AluJb SINE Alu -18 294 1 1632 150 131 0 chr9 127728107 127728374 -14543070 + AluSx SINE Alu 1 302 0 1528 85 0 10 chr9 127728383 127728584 -14542860 - AluSc SINE Alu -110 199 1 655 214 91 8 chr9 127728691 127728889 -14542555 + L1MB7 LINE L1 5822 6039 -145 788 160 25 27 chr9 127728893 127729506 -14541938 + CT-rich Low_complexity Low_complexity 1 612 0 264 224 45 0 chr9 127729582 127729649 -14541795 + L2 LINE L2 3193 3262 -10 2784 22 0 0 chr9 127730286 127730604 -14540840 - AluYb8 SINE Alu 0 318 1 433 296 154 42 chr9 127730701 127731032 -14540412 - L2 LINE L2 -1 3271 2904 868 284 26 4 chr9 127731038 127731270 -14540174 + MIR SINE MIR 13 249 -13 2175 93 0 16 chr9 127731407 127731718 -14539726 + AluSc SINE Alu 1 306 -3 426 197 20 0 chr9 127732195 127732293 -14539151 - MIR SINE MIR -58 150 73 2132 117 0 0 chr9 127732410 127732708 -14538736 + AluSq SINE Alu 3 300 -13 761 289 20 52 chr9 127733211 127733400 -14538044 + MIR SINE MIR 22 216 -46 2345 91 0 0 chr9 127733400 127733697 -14537747 + AluSx SINE Alu 1 297 -15 2127 113 7 0 chr9 127733699 127734001 -14537443 + AluSx SINE Alu 1 304 -8 761 289 20 52 chr9 127734001 127734057 -14537387 + MIR SINE MIR 217 262 0 531 308 55 16 chr9 127734052 127734234 -14537210 + MIR SINE MIR 74 262 0 * 1774 173 7 7 chr9 127734309 127734609 -14536835 + AluJb SINE Alu 1 300 -12 220 289 107 23 chr9 127734852 127735005 -14536439 + MIR SINE MIR 9 180 -28 186 286 143 0 chr9 127735533 127735631 -14535813 - MIR SINE MIR -2 260 149 304 242 15 15 chr9 127735859 127735925 -14535519 + L1MC4 LINE L1 6638 6703 -1339 249 196 0 0 chr9 127735925 127735976 -14535468 + (CA)n Simple_repeat Simple_repeat 2 52 0 192 77 0 0 chr9 127735979 127736005 -14535439 + (GA)n Simple_repeat Simple_repeat 2 27 0 1543 113 40 70 chr9 127736030 127736226 -14535218 - MLT2C1 LTR ERVL -58 339 139 1902 154 7 3 chr9 127736226 127736518 -14534926 - AluSx SINE Alu -19 293 1 2020 135 0 10 chr9 127736525 127736821 -14534623 - AluSx SINE Alu -19 293 1 1543 113 40 70 chr9 127736821 127736944 -14534500 - MLT2C1 LTR ERVL -264 133 22 1813 129 19 32 chr9 127737194 127737503 -14533941 + AluSx SINE Alu 1 305 -7 261 83 0 0 chr9 127737749 127737785 -14533659 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 481 173 49 0 chr9 127737789 127737870 -14533574 - AluSq SINE Alu -23 290 206 4421 125 114 105 chr9 127737873 127739378 -14532066 - pTR5 LTR ERV1 0 2438 770 779 188 0 57 chr9 127739378 127739405 -14532039 - AluJo SINE Alu -146 166 139 1706 81 0 0 chr9 127739405 127739614 -14531830 - AluSq SINE Alu -104 209 1 779 188 0 57 chr9 127739614 127739762 -14531682 - AluJo SINE Alu -173 139 1 259 325 0 0 chr9 127740190 127740270 -14531174 - MIR SINE MIR -55 153 74 202 244 33 56 chr9 127740760 127740850 -14530594 + MIR SINE MIR 49 136 -72 327 381 43 28 chr9 127741258 127741588 -14529856 + L2 LINE L2 2765 3098 -174 213 303 22 0 chr9 127741635 127741724 -14529720 + GA-rich Low_complexity Low_complexity 4 94 0 195 244 0 0 chr9 127742099 127742144 -14529300 - L2 LINE L2 -18 3254 3210 1214 160 0 0 chr9 127742413 127742607 -14528837 - AluSg/x SINE Alu -2 308 115 2254 90 3 0 chr9 127742920 127743219 -14528225 - AluSx SINE Alu -12 300 1 201 122 0 49 chr9 127743237 127743278 -14528166 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 268 318 45 26 chr9 127743297 127743451 -14527993 - LTR16A1 LTR ERVL -247 210 54 2190 115 0 13 chr9 127743763 127743943 -14527501 - AluSg SINE Alu 0 310 134 2266 92 0 3 chr9 127743943 127744237 -14527207 - AluSg1 SINE Alu -16 293 1 2190 115 0 13 chr9 127744237 127744370 -14527074 - AluSg SINE Alu -176 134 1 436 179 0 32 chr9 127744382 127744477 -14526967 - THE1A LTR MaLR -72 283 192 1628 158 27 59 chr9 127744477 127744679 -14526765 - L1MA4 LINE L1 -7 6293 6086 1255 157 90 94 chr9 127744679 127744978 -14526466 + AluJb SINE Alu 1 298 -14 1628 158 27 59 chr9 127744978 127745030 -14526414 - L1MA4 LINE L1 -214 6086 6034 2184 111 0 0 chr9 127745030 127745327 -14526117 - AluSx SINE Alu -15 297 1 1628 158 27 59 chr9 127745327 127745408 -14526036 - L1MA4 LINE L1 -266 6034 5968 1732 149 7 23 chr9 127745408 127745746 -14525698 - AluJb SINE Alu 0 312 1 1628 158 27 59 chr9 127745746 127745782 -14525662 - L1MA4 LINE L1 -332 5968 5932 441 113 0 0 chr9 127745782 127745853 -14525591 - L1MA4 LINE L1 -844 5456 5386 1990 108 3 88 chr9 127745857 127746198 -14525246 - AluSx SINE Alu 0 312 1 733 245 71 10 chr9 127746278 127746474 -14524970 - MIR SINE MIR -24 238 31 2397 83 0 0 chr9 127746825 127747125 -14524319 + AluSq SINE Alu 5 304 -9 993 305 79 41 chr9 127747233 127747265 -14524179 + L3 LINE CR1 590 619 -958 2289 101 0 0 chr9 127747265 127747572 -14523872 - AluSq SINE Alu -6 307 1 993 305 79 41 chr9 127747572 127748047 -14523397 + L3 LINE CR1 619 1116 -461 521 62 0 0 chr9 127748047 127748112 -14523332 + Alu SINE Alu 1 65 -246 1468 127 0 0 chr9 127748253 127748465 -14522979 + AluSg/x SINE Alu 85 296 -16 186 43 0 0 chr9 127748942 127748965 -14522479 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 801 196 0 0 chr9 127749001 127749134 -14522310 - AluSq/x SINE Alu -180 133 1 282 227 55 36 chr9 127750038 127750148 -14521296 + MIR SINE MIR 34 145 -63 395 318 24 16 chr9 127750202 127750328 -14521116 + MIR SINE MIR 23 149 -113 26 0 0 0 chr9 127751123 127751149 -14520295 + GC_rich Low_complexity Low_complexity 1 26 0 201 74 0 0 chr9 127752136 127752163 -14519281 + (CA)n Simple_repeat Simple_repeat 2 28 0 1901 106 40 7 chr9 127752206 127752481 -14518963 - AluSg1 SINE Alu -20 289 6 1418 151 33 0 chr9 127752494 127752766 -14518678 - L1MB2 LINE L1 -49 6122 5842 184 191 71 0 chr9 127752784 127752826 -14518618 + MIR SINE MIR 85 129 -79 187 231 0 0 chr9 127752840 127752879 -14518565 + L2 LINE L2 3258 3296 -17 560 173 135 0 chr9 127753653 127753786 -14517658 - MER20 DNA MER1_type -68 151 1 385 286 132 16 chr9 127753786 127753975 -14517469 - L2 LINE L2 -875 2439 2229 540 170 236 0 chr9 127753978 127754084 -14517360 + AluYa5 SINE Alu 153 283 -28 297 0 0 0 chr9 127754084 127754117 -14517327 + (CA)n Simple_repeat Simple_repeat 2 34 0 830 344 49 5 chr9 127754123 127754530 -14516914 - L2 LINE L2 -1072 2242 1818 447 295 76 11 chr9 127755053 127755251 -14516193 + L1MEd LINE L1 1167 1462 -5172 228 210 12 49 chr9 127755251 127755332 -14516112 + L1MA10 LINE L1 6159 6236 -98 823 197 7 0 chr9 127755346 127755493 -14515951 + FRAM SINE Alu 13 160 -16 267 169 0 93 chr9 127755504 127755546 -14515898 + L1MEd LINE L1 3331 3375 -3269 2272 100 3 0 chr9 127755546 127755847 -14515597 - AluSp SINE Alu -11 302 1 267 169 0 93 chr9 127755847 127755922 -14515522 + L1MEd LINE L1 3375 3437 -3207 525 127 0 0 chr9 127755942 127756013 -14515431 + AluSp/q SINE Alu 223 293 -20 407 295 98 0 chr9 127756017 127756241 -14515203 + L1MEd LINE L1 3422 3667 -2977 2036 126 7 0 chr9 127756243 127756529 -14514915 + AluSq SINE Alu 1 288 -25 2370 77 3 0 chr9 127756553 127756853 -14514591 + AluSp SINE Alu 1 301 -12 1992 103 9 37 chr9 127756864 127757185 -14514259 + AluSx SINE Alu 1 312 0 2187 120 3 0 chr9 127757471 127757780 -14513664 + AluSx SINE Alu 2 311 -1 199 336 94 31 chr9 127757950 127758078 -14513366 - L2 LINE L2 -8 3305 3170 2140 115 3 0 chr9 127758393 127758688 -14512756 - AluSx SINE Alu -16 296 1 2213 106 3 3 chr9 127759024 127759335 -14512109 - AluSq SINE Alu 0 313 3 1719 91 0 0 chr9 127759904 127760124 -14511320 - AluSq SINE Alu -93 220 1 2248 81 0 0 chr9 127760126 127760411 -14511033 - AluSc SINE Alu -12 297 13 1796 104 0 0 chr9 127760411 127760652 -14510792 - AluSc SINE Alu -68 241 1 456 108 0 0 chr9 127760672 127760737 -14510707 + Alu SINE Alu 235 299 -13 234 173 0 39 chr9 127760758 127760777 -14510667 + Alu SINE Alu 119 135 -165 279 79 0 0 chr9 127760777 127760815 -14510629 + Alu SINE Alu 3 40 -262 587 100 0 0 chr9 127762445 127762525 -14508919 + AluS SINE Alu 1 80 -232 252 282 147 24 chr9 127763465 127763635 -14507809 - MIR SINE MIR -59 203 13 209 338 129 7 chr9 127763996 127764135 -14507309 - L2 LINE L2 -9 3263 3108 644 197 8 0 chr9 127764443 127764560 -14506884 - FLAM_A SINE Alu -14 128 11 418 199 86 73 chr9 127764595 127764746 -14506698 + MLT1E3 LTR MaLR 62 214 -410 200 152 0 0 chr9 127765054 127765087 -14506357 + MIR SINE MIR 113 145 -63 951 148 133 0 chr9 127766112 127766308 -14505136 - AluJo SINE Alu -17 295 74 195 139 0 0 chr9 127767506 127767542 -14503902 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 2181 69 3 53 chr9 127767772 127768091 -14503353 - AluSx SINE Alu -9 303 1 1495 157 68 10 chr9 127768101 127768395 -14503049 - AluJb SINE Alu -1 311 1 2121 100 29 19 chr9 127768403 127768712 -14502732 - AluSx SINE Alu 0 312 1 326 306 151 34 chr9 127768724 127768930 -14502514 + MIR SINE MIR 32 261 -1 1945 110 31 17 chr9 127769452 127769621 -14501823 - AluSx SINE Alu -12 300 124 1982 118 0 62 chr9 127769621 127769944 -14501500 - AluSg SINE Alu -7 303 1 1945 110 31 17 chr9 127769944 127770064 -14501380 - AluSx SINE Alu -188 124 7 1990 106 3 78 chr9 127770078 127770398 -14501046 - AluSq SINE Alu -17 296 1 1175 83 6 50 chr9 127770428 127770609 -14500835 + AluSp SINE Alu 137 309 -4 664 265 151 71 chr9 127770683 127770775 -14500669 + L2 LINE L2 2448 2531 -782 2265 93 3 10 chr9 127770775 127771088 -14500356 + AluSq SINE Alu 1 311 -2 2233 102 0 0 chr9 127771092 127771387 -14500057 + AluSg SINE Alu 1 295 -15 2207 125 0 0 chr9 127771389 127771701 -14499743 + AluSx SINE Alu 1 312 0 2156 96 14 0 chr9 127771711 127772004 -14499440 + AluSp SINE Alu 5 301 -12 664 265 151 71 chr9 127772004 127772409 -14499035 + L2 LINE L2 2541 3081 -232 2154 104 7 0 chr9 127772409 127772707 -14498737 - AluSx SINE Alu -12 300 1 664 265 151 71 chr9 127772707 127772872 -14498572 + L2 LINE L2 3081 3231 -82 2087 92 7 3 chr9 127773063 127773355 -14498089 - AluSq SINE Alu 0 313 21 289 305 11 11 chr9 127774016 127774111 -14497333 + L2 LINE L2 2992 3086 -186 202 160 53 40 chr9 127774475 127774550 -14496894 + (CCGAG)n Simple_repeat Simple_repeat 1 76 0 180 0 0 0 chr9 127774643 127774663 -14496781 + (CGG)n Simple_repeat Simple_repeat 2 21 0 223 264 14 56 chr9 127775984 127776056 -14495388 - MIR3 SINE MIR -11 197 129 192 353 39 10 chr9 127776537 127776639 -14494805 + MIR SINE MIR 60 164 -98 321 322 57 22 chr9 127776718 127776945 -14494499 + MIR SINE MIR 17 256 -6 267 150 117 0 chr9 127777048 127777108 -14494336 + MER20 DNA MER1_type 54 120 -99 2345 54 0 10 chr9 127777579 127777874 -14493570 + AluY SINE Alu 1 292 -19 210 318 61 61 chr9 127778551 127778683 -14492761 + MIR SINE MIR 109 240 -22 21 0 0 0 chr9 127779604 127779625 -14491819 + AT_rich Low_complexity Low_complexity 1 21 0 1495 151 83 19 chr9 127779683 127779948 -14491496 + AluJo SINE Alu 1 282 -30 286 80 40 0 chr9 127779948 127779998 -14491446 + CT-rich Low_complexity Low_complexity 1 52 0 1130 137 68 19 chr9 127781363 127781474 -14489970 + AluJo SINE Alu 23 127 -185 2255 71 3 3 chr9 127781474 127781769 -14489675 + AluSq SINE Alu 1 295 -18 1130 137 68 19 chr9 127781769 127781862 -14489582 + AluJo SINE Alu 127 237 -75 21 0 0 0 chr9 127782961 127782982 -14488462 + AT_rich Low_complexity Low_complexity 1 21 0 1123 121 18 0 chr9 127788375 127788540 -14482904 - AluSg/x SINE Alu -18 294 127 1607 168 6 31 chr9 127788542 127788722 -14482722 - AluSq SINE Alu 0 313 143 2149 102 0 3 chr9 127788722 127789017 -14482427 - AluSx SINE Alu -18 294 1 1607 168 6 31 chr9 127789017 127789157 -14482287 - AluSq SINE Alu -170 143 1 2155 106 0 0 chr9 127789286 127789579 -14481865 - AluSx SINE Alu -17 295 3 519 292 309 17 chr9 127790074 127790185 -14481259 - L2 LINE L2 0 3313 3236 2015 116 3 7 chr9 127790185 127790316 -14481128 + AluSg SINE Alu 1 131 -179 2319 42 21 10 chr9 127790316 127790605 -14480839 + AluSc SINE Alu 1 292 -17 2015 116 3 7 chr9 127790605 127790774 -14480670 + AluSg SINE Alu 131 300 -10 519 292 309 17 chr9 127790774 127792484 -14478960 - L2 LINE L2 -77 3236 935 344 249 76 106 chr9 127792558 127792747 -14478697 + L1ME3A LINE L1 5963 6147 -23 591 14 0 14 chr9 127792749 127792818 -14478626 - U4 snRNA snRNA -77 68 1 258 116 0 0 chr9 127792871 127792914 -14478530 + (CA)n Simple_repeat Simple_repeat 2 44 0 2231 54 7 4 chr9 127793957 127794267 -14477177 - AluY SINE Alu 0 311 1 1251 186 0 4 chr9 127796141 127796367 -14475077 + AluJb SINE Alu 1 225 -87 722 196 39 0 chr9 127796639 127796792 -14474652 + L1M4 LINE L1 2426 2584 -3562 2131 120 0 0 chr9 127796904 127797213 -14474231 - AluSq SINE Alu -4 309 1 2034 123 0 0 chr9 127797241 127797525 -14473919 - AluSq SINE Alu -29 284 1 439 295 98 0 chr9 127797527 127797751 -14473693 - L1M4 LINE L1 -2977 3169 2924 521 118 0 0 chr9 127797758 127797826 -14473618 - AluSp/q SINE Alu -23 290 223 382 111 0 14 chr9 127797846 127797918 -14473526 - L1M4 LINE L1 -3207 2939 2869 2236 99 3 0 chr9 127797921 127798223 -14473221 + AluSp SINE Alu 1 303 -10 794 197 7 0 chr9 127798276 127798423 -14473021 - FRAM SINE Alu -16 160 13 265 210 12 49 chr9 127798437 127798518 -14472926 - L1MA10 LINE L1 -98 6236 6159 233 186 14 14 chr9 127798517 127798587 -14472857 - L1MDb LINE L1 -5193 1216 1147 * 773 344 49 5 chr9 127799239 127799646 -14471798 + L2 LINE L2 1818 2242 -1072 297 0 0 0 chr9 127799652 127799685 -14471759 + (TG)n Simple_repeat Simple_repeat 2 34 0 524 170 236 0 chr9 127799685 127799791 -14471653 - AluYa5 SINE Alu -28 283 153 393 265 138 21 chr9 127799794 127799983 -14471461 + L2 LINE L2 2229 2439 -875 643 165 135 0 chr9 127799983 127800116 -14471328 + MER20 DNA MER1_type 1 151 -68 341 188 88 0 chr9 127801279 127801359 -14470085 + MER20 DNA MER1_type 133 219 0 1049 266 153 42 chr9 127801359 127801437 -14470007 + L2 LINE L2 2432 2500 -813 1946 146 3 0 chr9 127801437 127801746 -14469698 + AluSx SINE Alu 1 310 -2 1049 266 153 42 chr9 127801746 127801970 -14469474 + L2 LINE L2 2500 2698 -615 1615 169 36 0 chr9 127801970 127802248 -14469196 + AluJo SINE Alu 6 293 -19 1049 266 153 42 chr9 127802248 127802640 -14468804 + L2 LINE L2 2698 3240 -73 2050 120 13 0 chr9 127802640 127802940 -14468504 - AluSx SINE Alu -2 310 7 1049 266 153 42 chr9 127802940 127803024 -14468420 + L2 LINE L2 3240 3313 0 1931 153 0 0 chr9 127804219 127804514 -14466930 + AluJb SINE Alu 1 295 -17 523 318 112 17 chr9 127805121 127805354 -14466090 + MIR SINE MIR 2 256 -6 275 249 30 91 chr9 127806182 127806276 -14465168 - L1ME LINE L1 -343 5778 5680 2288 90 0 0 chr9 127806276 127806576 -14464868 - AluY SINE Alu -11 300 1 1590 78 0 32 chr9 127806578 127806741 -14464703 - AluSc SINE Alu -14 295 139 2145 101 0 7 chr9 127806741 127807037 -14464407 - AluSc SINE Alu -13 296 3 1590 78 0 32 chr9 127807037 127807090 -14464354 - AluSc SINE Alu -170 139 86 275 249 30 91 chr9 127807090 127807157 -14464287 - L1ME LINE L1 -442 5679 5624 300 248 74 50 chr9 127807176 127807297 -14464147 - L2 LINE L2 0 3272 3149 2258 67 0 3 chr9 127807411 127807716 -14463728 - AluY SINE Alu 0 304 1 2325 57 7 10 chr9 127807797 127808093 -14463351 - AluY SINE Alu -16 295 1 964 170 1 11 chr9 127808314 127808508 -14462936 + L1MB3 LINE L1 5572 5755 -423 1729 166 35 0 chr9 127808510 127808793 -14462651 + AluSx SINE Alu 1 293 -19 682 177 57 0 chr9 127808831 127808972 -14462472 + BC200 scRNA scRNA 10 158 -42 2126 143 8 29 chr9 127808973 127809073 -14462371 + L1MB3 LINE L1 5725 5826 -357 2097 81 3 78 chr9 127809073 127809407 -14462037 + AluSc SINE Alu 1 309 0 2126 143 8 29 chr9 127809407 127809684 -14461760 + L1MB3 LINE L1 5826 6094 -89 387 294 39 0 chr9 127809728 127809830 -14461614 + L1ME LINE L1 2982 3087 -3059 1642 157 0 74 chr9 127809837 127809964 -14461480 + AluSx SINE Alu 7 142 -170 1962 127 6 19 chr9 127809964 127810278 -14461166 + AluSg SINE Alu 1 310 0 1642 157 0 74 chr9 127810278 127810475 -14460969 + AluSx SINE Alu 142 307 -5 189 0 0 0 chr9 127810478 127810499 -14460945 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1752 128 8 0 chr9 127810506 127810793 -14460651 + AluSx SINE Alu 23 311 0 708 293 91 50 chr9 127810795 127811150 -14460294 + L1ME LINE L1 4013 4352 -1769 1836 118 44 0 chr9 127811150 127811455 -14459989 + AluSx SINE Alu 4 320 0 2113 113 10 0 chr9 127811456 127811757 -14459687 + AluSx SINE Alu 1 304 -8 708 293 91 50 chr9 127811757 127811772 -14459672 + L1ME LINE L1 4352 4365 -1756 2246 91 0 7 chr9 127811772 127812070 -14459374 + AluSq SINE Alu 1 296 -17 708 293 91 50 chr9 127812070 127813194 -14458250 + L1ME LINE L1 4365 5578 -543 2017 122 3 10 chr9 127814332 127814627 -14456817 + AluSx SINE Alu 1 293 -19 2241 94 0 10 chr9 127814630 127814937 -14456507 + AluSg SINE Alu 1 304 -6 302 273 8 124 chr9 127814994 127815062 -14456382 + MER5A DNA MER1_type 68 118 -71 2052 107 0 61 chr9 127815062 127815252 -14456192 - AluSq SINE Alu -6 307 144 2052 82 21 7 chr9 127815252 127815534 -14455910 - AluSc SINE Alu -23 286 1 2052 107 0 61 chr9 127815534 127815670 -14455774 - AluSq SINE Alu -169 144 1 302 273 8 124 chr9 127815670 127815722 -14455722 + MER5A DNA MER1_type 118 174 -15 659 309 17 30 chr9 127815767 127815934 -14455510 - MIR SINE MIR -4 258 93 1934 150 38 47 chr9 127815934 127816274 -14455170 + MER1B DNA MER1_type 1 337 0 659 309 17 30 chr9 127816274 127816336 -14455108 - MIR SINE MIR -169 93 32 2189 95 0 0 chr9 127817853 127818147 -14453297 - AluY SINE Alu -17 294 1 1837 135 82 25 chr9 127818239 127818594 -14452850 - THE1C LTR MaLR 0 375 1 228 369 50 11 chr9 127819226 127819405 -14452039 - L2 LINE L2 -791 2523 2338 2345 68 3 13 chr9 127819521 127819831 -14451613 + AluY SINE Alu 1 307 -4 430 177 104 10 chr9 127819848 127819944 -14451500 + L1M4 LINE L1 4705 4809 -1337 309 276 138 37 chr9 127819987 127820123 -14451321 - MIR SINE MIR -68 140 5 576 276 48 40 chr9 127820468 127820696 -14450748 + MIR SINE MIR 33 262 0 668 216 8 0 chr9 127820882 127821007 -14450437 + AluJo SINE Alu 10 135 -177 610 146 0 0 chr9 127821018 127821121 -14450323 + AluSp/q SINE Alu 211 313 0 1997 118 0 33 chr9 127821127 127821470 -14449974 + AluSg SINE Alu 1 310 0 437 237 234 46 chr9 127821614 127821897 -14449547 + L1 LINE L1 3161 3506 -2640 1671 161 19 26 chr9 127821897 127822207 -14449237 + AluJo SINE Alu 1 308 -4 437 237 234 46 chr9 127822207 127822227 -14449217 + L1 LINE L1 3506 3521 -2625 306 351 53 0 chr9 127822282 127822413 -14449031 + L1ME3A LINE L1 5814 5951 -219 1169 152 26 43 chr9 127822667 127822897 -14448547 + AluJo SINE Alu 82 307 -5 242 310 103 0 chr9 127822918 127823102 -14448342 + L1ME3A LINE L1 5749 5951 -219 21 36 0 0 chr9 127823314 127823342 -14448102 + AT_rich Low_complexity Low_complexity 1 28 0 415 309 51 42 chr9 127823390 127823607 -14447837 + L2 LINE L2 2417 2635 -679 679 316 78 52 chr9 127823667 127823854 -14447590 + L2 LINE L2 2881 3062 -251 2294 79 3 0 chr9 127823854 127824146 -14447298 - AluSp SINE Alu -20 293 1 679 316 78 52 chr9 127824146 127824379 -14447065 + L2 LINE L2 3062 3312 -1 1773 133 32 0 chr9 127824497 127824775 -14446669 + AluSx SINE Alu 21 307 -5 1902 142 6 25 chr9 127824961 127825278 -14446166 + AluJb SINE Alu 1 311 -1 327 290 116 7 chr9 127825483 127825621 -14445823 + MIR SINE MIR 2 154 -108 374 295 55 0 chr9 127825722 127825893 -14445551 + MER20B DNA MER1_type 17 199 -20 823 128 7 34 chr9 127825923 127826118 -14445326 - AluSg/x SINE Alu 0 325 135 1201 210 100 15 chr9 127826122 127826393 -14445051 - AluJo SINE Alu -8 294 1 265 80 0 9 chr9 127826648 127826860 -14444584 + AluSg SINE Alu 1 308 0 2222 110 0 0 chr9 127827943 127828251 -14443193 + AluSx SINE Alu 4 311 -1 1992 149 7 0 chr9 127828265 127828574 -14442870 + AluJb SINE Alu 1 311 -1 889 191 0 0 chr9 127828632 127828784 -14442660 + FAM SINE Alu 20 171 -14 320 22 0 43 chr9 127828854 127828900 -14442544 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 21 89 0 0 chr9 127828926 127828982 -14442462 + AT_rich Low_complexity Low_complexity 1 56 0 885 120 7 28 chr9 127829289 127829431 -14442013 - FLAM_C SINE Alu -4 139 1 21 71 0 0 chr9 127829570 127829612 -14441832 + AT_rich Low_complexity Low_complexity 1 42 0 693 186 39 16 chr9 127829649 127829778 -14441666 - FLAM_C SINE Alu -1 132 1 1887 151 0 0 chr9 127829852 127830150 -14441294 - AluSx SINE Alu -14 298 1 1824 144 0 26 chr9 127830349 127830661 -14440783 + AluJb SINE Alu 9 312 0 2263 70 0 3 chr9 127830807 127831092 -14440352 + AluY SINE Alu 16 299 -12 1466 196 18 11 chr9 127831430 127831716 -14439728 + AluJb SINE Alu 2 289 -23 747 267 52 43 chr9 127832186 127832534 -14438910 - LTR33 LTR ERVL -170 351 1 200 195 0 0 chr9 127834636 127834677 -14436767 + A-rich Low_complexity Low_complexity 1 41 0 502 245 138 16 chr9 127835882 127836081 -14435363 + MIR SINE MIR 43 262 0 300 261 0 15 chr9 127836356 127836421 -14435023 + MIR SINE MIR 29 92 -170 870 295 12 4 chr9 127838405 127838649 -14432795 + MIR SINE MIR 17 262 0 2144 166 11 0 chr9 127838652 127839013 -14432431 - MLT1A1 LTR MaLR 0 365 1 208 191 71 0 chr9 127839069 127839111 -14432333 - L2 LINE L2 -35 3237 3193 464 305 176 0 chr9 127839160 127839209 -14432235 - MIR SINE MIR -15 247 208 3423 139 23 23 chr9 127839209 127839408 -14432036 + MER68 LTR ERV1 4 202 -360 243 0 0 0 chr9 127839408 127839435 -14432009 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1935 139 22 0 chr9 127839435 127839709 -14431735 - AluSx SINE Alu -32 280 1 3423 139 23 23 chr9 127839709 127840067 -14431377 + MER68 LTR ERV1 200 562 0 464 305 176 0 chr9 127840067 127840227 -14431217 - MIR SINE MIR -54 208 1 479 313 18 105 chr9 127840227 127840759 -14430685 - L2 LINE L2 -100 3172 2687 1951 155 0 3 chr9 127840759 127841055 -14430389 + AluJb SINE Alu 1 295 -17 1690 148 108 0 chr9 127841136 127841460 -14429984 - MER46B DNA MER2_type -1 235 2 1232 147 15 25 chr9 127841529 127841733 -14429711 + AluJb SINE Alu 21 222 -90 322 336 160 16 chr9 127841781 127842025 -14429419 - L2 LINE L2 -787 2527 2249 1557 172 20 54 chr9 127842449 127842745 -14428699 - AluJo SINE Alu -26 286 1 255 272 74 0 chr9 127842745 127842826 -14428618 + L1ME LINE L1 5795 5881 -289 2181 123 0 3 chr9 127843167 127843476 -14427968 + AluSg SINE Alu 2 309 -1 1217 124 0 6 chr9 127843476 127843653 -14427791 + AluSc SINE Alu 132 307 -2 2123 131 3 3 chr9 127843795 127844107 -14427337 + AluSx SINE Alu 1 312 0 377 349 31 23 chr9 127845026 127845155 -14426289 - MIR3 SINE MIR -70 138 9 2481 90 3 0 chr9 127845545 127845856 -14425588 - AluSp SINE Alu -1 312 1 300 220 113 57 chr9 127846690 127846831 -14424613 - MIR3 SINE MIR -54 154 6 24 32 0 0 chr9 127847454 127847485 -14423959 + GC_rich Low_complexity Low_complexity 1 31 0 603 132 0 19 chr9 127847804 127847910 -14423534 + FLAM_A SINE Alu 13 116 -26 2114 98 21 0 chr9 127847988 127848274 -14423170 + AluSp SINE Alu 1 292 -21 1553 93 4 85 chr9 127850295 127850543 -14420901 - AluSg/x SINE Alu -14 298 71 21 81 0 14 chr9 127851247 127851268 -14420176 + AT_rich Low_complexity Low_complexity 1 21 -52 2385 75 7 0 chr9 127851268 127851561 -14419883 + AluSx SINE Alu 1 295 -17 21 81 0 14 chr9 127851561 127851613 -14419831 + AT_rich Low_complexity Low_complexity 21 73 0 203 220 37 46 chr9 127853589 127853698 -14417746 + (CATATA)n Simple_repeat Simple_repeat 2 109 0 335 238 203 30 chr9 127854514 127854647 -14416797 + MIR3 SINE MIR 13 166 -58 28 29 0 0 chr9 127854852 127854887 -14416557 + AT_rich Low_complexity Low_complexity 1 35 0 2110 118 20 0 chr9 127855071 127855368 -14416076 + AluSq SINE Alu 1 303 -10 433 290 67 84 chr9 127855416 127855456 -14415988 + L2 LINE L2 3022 3061 -252 980 161 0 24 chr9 127855456 127855624 -14415820 - FRAM SINE Alu -2 164 1 433 290 67 84 chr9 127855624 127855880 -14415564 + L2 LINE L2 3061 3313 0 607 277 79 17 chr9 127856255 127856432 -14415012 - MIR3 SINE MIR -9 199 12 1982 151 0 35 chr9 127856761 127857080 -14414364 + AluJo SINE Alu 1 308 -4 2388 81 7 0 chr9 127857219 127857516 -14413928 + AluSq SINE Alu 1 299 -14 284 194 56 0 chr9 127859077 127859149 -14412295 + MER116 DNA Mariner 5 80 0 235 208 42 0 chr9 127859166 127859214 -14412230 - L2 LINE L2 -6 3266 3217 2013 97 4 0 chr9 127859341 127859600 -14411844 + AluSg SINE Alu 1 260 -50 837 54 9 18 chr9 127859600 127859706 -14411738 - AluSq/x SINE Alu -208 105 1 1438 153 130 8 chr9 127860005 127860266 -14411178 - AluJo SINE Alu -19 293 1 504 249 27 66 chr9 127860267 127860524 -14410920 + L1ME2 LINE L1 2534 2780 -3366 481 237 59 0 chr9 127860579 127860697 -14410747 - MIR SINE MIR -70 192 68 1229 175 7 41 chr9 127860705 127860996 -14410448 - L1MB8 LINE L1 0 6178 5898 2254 109 0 7 chr9 127861009 127861311 -14410133 + AluSx SINE Alu 1 300 -12 527 178 0 0 chr9 127861439 127861529 -14409915 + FLAM_A SINE Alu 31 120 -22 1327 106 0 6 chr9 127861574 127861754 -14409690 + AluSg/x SINE Alu 112 290 -22 204 163 23 0 chr9 127861760 127861803 -14409641 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 4133 237 97 37 chr9 127861820 127862344 -14409100 + L1ME2 LINE L1 3223 3714 -2432 2478 77 0 0 chr9 127862344 127862644 -14408800 - AluSp SINE Alu -13 300 1 4133 237 97 37 chr9 127862644 127863115 -14408329 + L1ME2 LINE L1 3714 4155 -1991 1795 168 3 13 chr9 127863115 127863418 -14408026 - AluJb SINE Alu -12 300 1 4133 237 97 37 chr9 127863418 127863494 -14407950 + L1ME2 LINE L1 4155 4225 -1921 2213 96 0 30 chr9 127863494 127863795 -14407649 - AluSg SINE Alu -18 292 1 4133 237 97 37 chr9 127863795 127863806 -14407638 + L1ME2 LINE L1 4225 4234 -1912 2159 116 0 13 chr9 127863806 127864108 -14407336 - AluSx SINE Alu -14 298 1 4133 237 97 37 chr9 127864108 127864750 -14406694 + L1ME2 LINE L1 4234 5066 -1080 2259 113 7 0 chr9 127864750 127865060 -14406384 + AluSx SINE Alu 1 312 0 4133 237 97 37 chr9 127865060 127865131 -14406313 + L1ME2 LINE L1 5066 5131 -1015 303 0 0 0 chr9 127865209 127865248 -14406196 - L1PA4 LINE L1 -184 5971 5933 1222 14 0 0 chr9 127865248 127865387 -14406057 + L1PA4 LINE L1 6008 6146 -9 473 233 75 7 chr9 127865448 127865594 -14405850 + L1ME2 LINE L1 5440 5595 -569 322 274 48 0 chr9 127865594 127865678 -14405766 - L1MC4 LINE L1 -1340 6702 6615 4575 48 7 2 chr9 127865680 127866244 -14405200 - L1PA5 LINE L1 -16 6138 5572 686 219 6 19 chr9 127866360 127866520 -14404924 - FRAM SINE Alu -18 158 1 1173 228 54 31 chr9 127866521 127866946 -14404498 + L1ME2 LINE L1 5715 6149 -15 1580 180 10 29 chr9 127866967 127867273 -14404171 + AluJo SINE Alu 5 304 -8 654 200 0 24 chr9 127867284 127867409 -14404035 + FLAM_A SINE Alu 8 129 -13 2374 116 0 0 chr9 127867494 127867805 -14403639 + AluSx SINE Alu 2 312 0 825 162 0 22 chr9 127867868 127868004 -14403440 - FLAM_C SINE Alu 0 133 1 2021 116 46 0 chr9 127868082 127868366 -14403078 + AluSq SINE Alu 1 297 -16 781 80 27 47 chr9 127868370 127868520 -14402924 + L1MA5A LINE L1 5977 6123 -174 401 173 99 0 chr9 127868520 127868601 -14402843 - AluS SINE Alu -3 308 220 1193 106 0 6 chr9 127869024 127869184 -14402260 - AluSq SINE Alu -154 159 1 1192 280 46 36 chr9 127869239 127869469 -14401975 - L1ME3 LINE L1 -221 5941 5715 2169 119 0 0 chr9 127869469 127869762 -14401682 + AluSg SINE Alu 1 293 -17 1192 280 46 36 chr9 127869762 127870141 -14401303 - L1ME3 LINE L1 -447 5715 5326 1589 176 0 8 chr9 127870376 127870626 -14400818 + AluJo SINE Alu 1 248 -64 421 169 46 85 chr9 127870632 127870762 -14400682 + Tigger2 DNA MER2_type 29 153 -2565 416 288 23 30 chr9 127872159 127872291 -14399153 + MIR3 SINE MIR 38 168 -40 748 202 0 0 chr9 127872709 127872838 -14398606 + FLAM_A SINE Alu 1 129 -4 12017 114 80 58 chr9 127872981 127873276 -14398168 + Tigger2 DNA MER2_type 136 423 -2295 2193 27 4 0 chr9 127873276 127873538 -14397906 + L1PA5 LINE L1 5888 6150 -4 12017 114 80 58 chr9 127873538 127874086 -14397358 + Tigger2 DNA MER2_type 423 957 -1761 2050 118 0 4 chr9 127874086 127874366 -14397078 + AluSx SINE Alu 1 279 -33 12017 114 80 58 chr9 127874366 127875846 -14395598 + Tigger2 DNA MER2_type 957 2513 -205 730 214 42 12 chr9 127875847 127876015 -14395429 - FAM SINE Alu 0 175 3 345 66 0 187 chr9 127876044 127876092 -14395352 - Tigger2 DNA MER2_type -142 2576 2551 2302 107 7 0 chr9 127876092 127876400 -14395044 - AluSx SINE Alu -2 310 1 345 66 0 187 chr9 127876400 127876442 -14395002 - Tigger2 DNA MER2_type -167 2551 2503 379 130 0 0 chr9 127876455 127876509 -14394935 - AluSp/q SINE Alu -20 283 230 1116 109 0 0 chr9 127876609 127876780 -14394664 + AluSp SINE Alu 137 307 0 2141 122 0 7 chr9 127876843 127877147 -14394297 - AluSq SINE Alu -11 302 1 25 65 0 0 chr9 127877270 127877316 -14394128 + AT_rich Low_complexity Low_complexity 1 46 0 191 338 0 12 chr9 127878306 127878386 -14393058 + L2 LINE L2 2179 2257 -1057 333 139 0 14 chr9 127878527 127878599 -14392845 + Charlie5 DNA MER1_type 2510 2580 -32 366 288 130 11 chr9 127878659 127878843 -14392601 + L2 LINE L2 2319 2524 -790 1630 165 104 0 chr9 127879001 127879328 -14392116 - MER46B DNA MER2_type 0 236 1 991 121 0 0 chr9 127879448 127879580 -14391864 + AluSq/x SINE Alu 1 132 -180 1996 104 24 10 chr9 127879583 127879880 -14391564 + AluSg SINE Alu 1 301 -9 371 310 109 62 chr9 127879901 127880226 -14391218 + L2 LINE L2 2917 3260 -12 1829 143 0 15 chr9 127880226 127880499 -14390945 + AluJo SINE Alu 33 301 -11 371 310 109 62 chr9 127880499 127880512 -14390932 + L2 LINE L2 3260 3271 -1 929 189 18 0 chr9 127880834 127880998 -14390446 - MIR SINE MIR -90 172 6 246 265 120 62 chr9 127882789 127882910 -14388534 + L1 LINE L1 4392 4505 -1641 2064 127 21 0 chr9 127882910 127883201 -14388243 - AluSq SINE Alu -16 297 1 246 265 120 62 chr9 127883201 127883430 -14388014 + L1 LINE L1 4505 4719 -1427 1884 159 20 0 chr9 127883430 127883732 -14387712 + AluJb SINE Alu 1 308 -4 246 265 120 62 chr9 127883732 127883988 -14387456 + L1 LINE L1 4719 5034 -1112 180 0 0 0 chr9 127884115 127884135 -14387309 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2359 88 0 0 chr9 127884137 127884432 -14387012 + AluSg SINE Alu 1 295 -15 604 252 0 8 chr9 127884438 127884565 -14386879 + FLAM_C SINE Alu 1 126 -7 267 228 351 0 chr9 127884605 127884719 -14386725 + L2 LINE L2 3143 3296 -17 30 27 0 0 chr9 127885136 127885173 -14386271 + AT_rich Low_complexity Low_complexity 1 37 0 552 152 4 10 chr9 127885398 127885648 -14385796 + AluJo SINE Alu 1 298 -14 22 0 0 0 chr9 127886330 127886352 -14385092 + AT_rich Low_complexity Low_complexity 1 22 0 2334 96 3 6 chr9 127887502 127887814 -14383630 - AluSp SINE Alu -2 311 1 206 121 0 0 chr9 127887963 127887996 -14383448 + (A)n Simple_repeat Simple_repeat 1 33 0 2260 116 0 0 chr9 127888924 127889218 -14382226 + AluSx SINE Alu 1 294 -18 2241 113 0 0 chr9 127889357 127889648 -14381796 - AluSx SINE Alu -10 302 12 414 0 0 0 chr9 127889765 127889811 -14381633 + (TA)n Simple_repeat Simple_repeat 2 47 0 2391 91 3 0 chr9 127889811 127890118 -14381326 - AluSp SINE Alu -5 308 1 2153 98 4 0 chr9 127890386 127890661 -14380783 - AluSx SINE Alu -36 276 1 603 344 42 20 chr9 127890842 127891200 -14380244 + L1MEd LINE L1 358 723 -5396 558 117 0 210 chr9 127891266 127891428 -14380016 + FLAM_C SINE Alu 3 130 -3 252 0 0 0 chr9 127891511 127891539 -14379905 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 2351 50 0 0 chr9 127891539 127891821 -14379623 - AluY SINE Alu -29 282 1 1960 142 35 0 chr9 127891822 127892111 -14379333 - AluSx SINE Alu -13 299 1 330 106 0 0 chr9 127892116 127892163 -14379281 - AluJb SINE Alu -171 131 85 529 294 46 30 chr9 127892180 127892747 -14378697 + L1MEd LINE L1 922 1497 -4813 25 0 0 0 chr9 127892828 127892853 -14378591 + AT_rich Low_complexity Low_complexity 1 25 0 241 239 0 0 chr9 127892871 127892938 -14378506 + L1MEd LINE L1 2931 2997 -3132 1758 159 3 32 chr9 127892941 127893255 -14378189 - AluSx SINE Alu -7 305 1 1533 174 10 27 chr9 127893284 127893582 -14377862 + AluSx SINE Alu 5 297 -15 1000 97 15 0 chr9 127893589 127893723 -14377721 + AluY SINE Alu 1 136 -175 42415 35 2 1 chr9 127893723 127899891 -14371553 + L1PA3 LINE L1 6 6155 0 1216 110 0 6 chr9 127899899 127900101 -14371343 + AluSg/x SINE Alu 119 319 0 510 267 239 6 chr9 127900210 127900566 -14370878 + L1M4 LINE L1 4733 5171 -975 201 283 17 50 chr9 127900567 127900627 -14370817 + L2 LINE L2 3241 3298 -15 385 197 33 0 chr9 127900660 127900782 -14370662 + L1M4 LINE L1 5174 5299 -847 503 235 63 45 chr9 127900785 127901006 -14370438 - L1ME LINE L1 -536 5634 5410 2163 128 7 7 chr9 127901401 127901706 -14369738 + AluSx SINE Alu 1 305 -7 2056 132 0 3 chr9 127901782 127902070 -14369374 - AluSx SINE Alu -25 287 1 275 311 100 13 chr9 127902070 127902369 -14369075 - L1ME4a LINE L1 -38 6083 5759 800 183 0 0 chr9 127903192 127903318 -14368126 + FLAM_C SINE Alu 1 126 -17 2051 150 3 0 chr9 127903466 127903773 -14367671 + AluJb SINE Alu 1 308 -4 333 339 48 92 chr9 127904628 127904920 -14366524 - L2 LINE L2 0 3272 2994 777 209 7 40 chr9 127904940 127905217 -14366227 - L1MEc LINE L1 -4099 2297 2030 22 0 0 0 chr9 127905373 127905395 -14366049 + AT_rich Low_complexity Low_complexity 1 22 0 608 160 10 0 chr9 127905450 127905550 -14365894 - FLAM_A SINE Alu -12 130 30 440 291 150 47 chr9 127905571 127906106 -14365338 - L1M4 LINE L1 -3302 3080 2445 1680 178 7 21 chr9 127906106 127906392 -14365052 - AluJo SINE Alu -30 282 1 440 291 150 47 chr9 127906392 127906567 -14364877 - L1M4 LINE L1 -3937 2445 2290 641 153 84 0 chr9 127906981 127907112 -14364332 - L1MEc LINE L1 -5975 230 89 691 203 72 72 chr9 127907233 127907440 -14364004 - MER58C DNA MER1_type -7 208 2 2331 74 3 7 chr9 127907952 127908249 -14363195 - AluSc SINE Alu -13 296 1 2246 103 0 28 chr9 127909763 127910082 -14361362 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr9 127910593 127910614 -14360830 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr9 127910745 127910785 -14360659 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr9 127911173 127911193 -14360251 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 2157 93 31 10 chr9 127911199 127911489 -14359955 - AluSq SINE Alu -17 296 1 2171 138 0 0 chr9 127912475 127912773 -14358671 - AluSx SINE Alu -14 298 1 1926 166 0 6 chr9 127912784 127913097 -14358347 - AluJb SINE Alu -1 311 1 302 235 335 15 chr9 127913556 127913756 -14357688 + L2 LINE L2 1998 2261 -1053 458 264 98 40 chr9 127913934 127914210 -14357234 + MLT1I LTR MaLR 91 382 -27 2150 84 42 3 chr9 127914940 127915224 -14356220 - AluY SINE Alu -16 295 1 305 170 98 27 chr9 127915489 127915601 -14355843 - L1MC5 LINE L1 -36 7925 7806 252 0 0 0 chr9 127915846 127915874 -14355570 + (TA)n Simple_repeat Simple_repeat 2 29 0 2409 86 3 0 chr9 127915874 127916178 -14355266 - AluSx SINE Alu -7 305 1 2378 80 0 10 chr9 127916303 127916603 -14354841 - AluSx SINE Alu -15 297 1 621 158 0 0 chr9 127916801 127916896 -14354548 + FLAM_A SINE Alu 33 127 -15 288 0 0 0 chr9 127917150 127917182 -14354262 + (CAA)n Simple_repeat Simple_repeat 2 33 0 751 175 41 6 chr9 127917285 127917456 -14353988 + L1MB7 LINE L1 6008 6184 0 614 268 88 20 chr9 127917650 127918036 -14353408 - LTR33 LTR ERVL -5 516 4 1655 169 3 50 chr9 127918143 127918462 -14352982 + AluJb SINE Alu 1 304 -8 1823 179 3 6 chr9 127918761 127919074 -14352370 + AluJo SINE Alu 1 312 0 500 299 116 13 chr9 127919171 127919395 -14352049 + MIR SINE MIR 16 262 0 942 136 0 7 chr9 127919465 127919605 -14351839 + AluJ SINE Alu 1 139 -173 560 118 0 0 chr9 127919605 127919690 -14351754 + MER41A LTR ERV1 384 468 -86 908 175 54 0 chr9 127919695 127919861 -14351583 + AluJ SINE Alu 131 305 -7 299 242 88 0 chr9 127919899 127919990 -14351454 + MIR SINE MIR 164 262 0 295 291 33 20 chr9 127920052 127920203 -14351241 + HAL1 LINE L1 2250 2402 -105 767 226 113 79 chr9 127920528 127920675 -14350769 + AluSp SINE Alu 2 143 -160 2260 100 0 10 chr9 127920675 127920976 -14350468 + AluSq SINE Alu 1 298 -15 767 226 113 79 chr9 127920976 127921120 -14350324 + AluSp SINE Alu 143 303 0 2274 107 0 3 chr9 127921320 127921620 -14349824 + AluSq SINE Alu 1 299 -14 1735 148 54 4 chr9 127921668 127921946 -14349498 + AluJb SINE Alu 7 298 -14 2303 103 3 7 chr9 127922793 127923103 -14348341 + AluSc SINE Alu 1 309 0 574 278 18 6 chr9 127923188 127923357 -14348087 - MLT1H LTR MaLR -2 547 377 1946 139 0 26 chr9 127923760 127924070 -14347374 + AluJb SINE Alu 1 302 -10 521 313 122 33 chr9 127924077 127924308 -14347136 - L1MC4a LINE L1 -1826 5982 5703 2060 107 7 31 chr9 127924308 127924621 -14346823 - AluSx SINE Alu 0 306 1 521 313 122 33 chr9 127924621 127924756 -14346688 - L1MC4a LINE L1 -2105 5703 5582 198 303 52 71 chr9 127926075 127926230 -14345214 + L2 LINE L2 1860 2011 -1303 2137 121 3 3 chr9 127926564 127926861 -14344583 + AluSx SINE Alu 1 297 -15 557 260 0 8 chr9 127926867 127926994 -14344450 + FLAM_C SINE Alu 1 126 -7 228 333 114 0 chr9 127927683 127927797 -14343647 - MIR SINE MIR -125 137 11 2245 110 16 7 chr9 127927873 127928181 -14343263 - AluSx SINE Alu -1 311 1 1338 160 20 105 chr9 127928468 127928774 -14342670 - AluJo SINE Alu -7 305 26 4991 195 47 40 chr9 127928774 127930215 -14341229 + MER52A LTR ERV1 1 1755 0 1161 151 0 0 chr9 127930220 127930379 -14341065 - AluSx SINE Alu -153 159 1 1272 164 36 13 chr9 127930424 127930649 -14340795 - AluJo SINE Alu -82 230 1 201 254 113 14 chr9 127930785 127930856 -14340588 + MIR SINE MIR 117 194 -68 2044 80 0 3 chr9 127930931 127931219 -14340225 + L1P5 LINE L1 5505 5791 -360 313 314 0 0 chr9 127931224 127931310 -14340134 - L1MC4 LINE L1 -1339 6703 6618 2286 99 39 8 chr9 127931444 127931808 -14339636 + L1PB1 LINE L1 5777 6151 0 26 74 0 0 chr9 127931964 127932018 -14339426 + AT_rich Low_complexity Low_complexity 1 54 0 1982 163 23 45 chr9 127932163 127932561 -14338883 + MLT1B LTR MaLR 2 390 0 1129 148 78 0 chr9 127932793 127933064 -14338380 + MER33 DNA MER1_type 27 318 -6 2205 137 3 0 chr9 127933068 127933374 -14338070 - AluSq SINE Alu -6 307 1 271 111 19 19 chr9 127933617 127933671 -14337773 + (GAA)n Simple_repeat Simple_repeat 1 54 0 237 98 0 0 chr9 127933811 127933852 -14337592 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2326 73 7 0 chr9 127933854 127934141 -14337303 - AluSp SINE Alu -24 289 1 22 0 0 0 chr9 127934273 127934295 -14337149 + AT_rich Low_complexity Low_complexity 1 22 0 436 253 96 14 chr9 127934960 127935106 -14336338 + L1ME3A LINE L1 6008 6165 -5 1647 189 13 13 chr9 127935663 127935964 -14335480 - AluJo SINE Alu -9 303 3 2311 85 0 0 chr9 127936114 127936419 -14335025 - AluSx SINE Alu 0 305 1 1095 108 11 22 chr9 127936595 127936780 -14334664 + L1MA4 LINE L1 6118 6300 0 3769 187 55 30 chr9 127936853 127936883 -14334561 + L1MB7 LINE L1 4968 4996 -1188 1813 108 87 25 chr9 127936883 127937169 -14334275 + AluSx SINE Alu 1 304 -8 3769 187 55 30 chr9 127937169 127937393 -14334051 + L1MB7 LINE L1 4996 5213 -971 1965 77 3 150 chr9 127937393 127937746 -14333698 + AluSq SINE Alu 9 309 -4 3769 187 55 30 chr9 127937746 127938173 -14333271 + L1MB7 LINE L1 5213 5628 -556 2008 125 4 0 chr9 127938173 127938445 -14332999 + AluSq SINE Alu 25 297 -16 3769 187 55 30 chr9 127938445 127938933 -14332511 + L1MB7 LINE L1 5628 6173 -11 1981 154 0 0 chr9 127939072 127939371 -14332073 - AluJb SINE Alu -13 299 1 265 262 164 0 chr9 127939492 127939614 -14331830 + L2 LINE L2 3167 3308 -5 406 309 119 5 chr9 127939881 127940082 -14331362 - L2 LINE L2 -2 3311 3088 2295 101 3 0 chr9 127941280 127941588 -14329856 + AluSx SINE Alu 1 309 -3 183 316 0 0 chr9 127941653 127941710 -14329734 - L2 LINE L2 0 3313 3257 255 125 0 0 chr9 127941984 127942024 -14329420 + (CA)n Simple_repeat Simple_repeat 1 40 0 239 154 46 15 chr9 127942456 127942521 -14328923 + L1MCa LINE L1 1379 1445 -5095 1699 172 0 26 chr9 127942908 127943210 -14328234 + AluJo SINE Alu 1 294 -18 1290 211 234 72 chr9 127943224 127943328 -14328116 + L1MC4 LINE L1 6459 6545 -1497 1978 132 3 7 chr9 127943328 127943623 -14327821 + AluSx SINE Alu 1 294 -18 1290 211 234 72 chr9 127943623 127944545 -14326899 + L1MC4 LINE L1 6545 7770 -272 608 170 14 92 chr9 127945228 127945369 -14326075 + MER33 DNA MER1_type 4 133 -191 2715 84 29 0 chr9 127945603 127945948 -14325496 + THE1A LTR MaLR 1 355 0 2403 75 0 0 chr9 127946112 127946405 -14325039 + AluY SINE Alu 1 293 -18 1572 182 13 16 chr9 127946574 127946887 -14324557 + AluJo SINE Alu 1 312 0 348 262 124 41 chr9 127946892 127947037 -14324407 + L1MCa LINE L1 1944 2100 -4440 21 36 0 0 chr9 127947171 127947199 -14324245 + AT_rich Low_complexity Low_complexity 1 28 0 1907 142 7 7 chr9 127947227 127947522 -14323922 - AluJb SINE Alu -17 295 1 28 0 0 0 chr9 127947529 127947557 -14323887 + AT_rich Low_complexity Low_complexity 1 28 0 1865 86 0 25 chr9 127947565 127947808 -14323636 + AluSg SINE Alu 1 237 -73 243 0 0 0 chr9 127947809 127947836 -14323608 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2303 97 3 0 chr9 127947836 127948135 -14323309 + AluSg SINE Alu 1 300 -10 1629 149 120 0 chr9 127948224 127948500 -14322944 + AluSx SINE Alu 1 309 -3 3356 259 92 72 chr9 127948501 127948844 -14322600 + L1MCa LINE L1 2503 2838 -3702 2305 112 3 0 chr9 127948844 127949149 -14322295 - AluSq SINE Alu -7 306 1 3356 259 92 72 chr9 127949149 127949664 -14321780 + L1MCa LINE L1 2838 3341 -3199 2297 113 0 0 chr9 127949664 127949964 -14321480 + AluSx SINE Alu 5 304 -8 3356 259 92 72 chr9 127949964 127951336 -14320108 + L1MCa LINE L1 3341 4732 -1808 2845 108 18 86 chr9 127951342 127951529 -14319915 + Tigger3(Golem) DNA MER2_type 2556 2754 -275 2310 65 7 0 chr9 127951529 127951849 -14319595 - AluY SINE Alu 0 322 1 2845 108 18 86 chr9 127951849 127952169 -14319275 + Tigger3(Golem) DNA MER2_type 2754 3029 0 1868 170 11 102 chr9 127952300 127952770 -14318674 + MLT1C LTR MaLR 5 431 -36 293 203 0 0 chr9 127952774 127952833 -14318611 - L1ME LINE L1 -722 5442 5384 225 129 0 0 chr9 127952833 127952864 -14318580 + MLT1C LTR MaLR 437 467 0 1915 158 10 0 chr9 127953315 127953619 -14317825 + AluJo SINE Alu 1 307 -5 743 217 0 0 chr9 127953638 127953758 -14317686 + AluSq/x SINE Alu 2 121 -191 36 0 0 0 chr9 127953763 127953799 -14317645 + AT_rich Low_complexity Low_complexity 1 36 0 2173 115 0 13 chr9 127954030 127954343 -14317101 + AluSx SINE Alu 1 309 -3 2451 61 0 3 chr9 127954419 127954714 -14316730 - AluY SINE Alu -17 294 1 2301 95 7 0 chr9 127954714 127955018 -14316426 - AluSq SINE Alu -7 306 1 200 157 20 39 chr9 127955099 127955150 -14316294 + MIR SINE MIR 128 177 -85 1687 183 3 3 chr9 127955286 127955570 -14315874 + AluSx SINE Alu 22 305 -7 875 172 6 37 chr9 127955570 127955733 -14315711 + AluJo/FRAM SINE Alu 137 294 -18 439 254 127 22 chr9 127955742 127955923 -14315521 - L1ME LINE L1 -511 5720 5521 1579 247 77 0 chr9 127955936 127956301 -14315143 - MER119 DNA MER1_type -186 397 5 186 40 0 0 chr9 127956356 127956363 -14315081 + (A)n Simple_repeat Simple_repeat 1 7 -18 2313 85 3 0 chr9 127956363 127956658 -14314786 - AluSp SINE Alu -17 296 1 186 40 0 0 chr9 127956658 127956675 -14314769 + (A)n Simple_repeat Simple_repeat 6 25 0 4595 162 62 22 chr9 127956785 127957681 -14313763 - L1MC3 LINE L1 -166 7619 6688 435 250 0 35 chr9 127957683 127957799 -14313645 - L1ME LINE L1 -731 5508 5397 524 211 21 0 chr9 127957802 127957897 -14313547 + MER58B DNA MER1_type 244 340 -1 2526 225 86 48 chr9 127957930 127958662 -14312782 - L1ME LINE L1 -5505 891 123 1706 112 4 13 chr9 127958662 127958894 -14312550 + MER30 DNA MER1_type 1 230 0 2526 225 86 48 chr9 127958894 127958988 -14312456 - L1ME LINE L1 -6273 123 34 925 177 30 63 chr9 127959009 127959246 -14312198 - L1M4 LINE L1 -2200 3946 3718 744 187 60 0 chr9 127959375 127959525 -14311919 - MSTB LTR MaLR -51 375 217 1847 128 215 8 chr9 127959525 127959878 -14311566 - MSTA LTR MaLR -2 426 1 646 215 8 25 chr9 127959891 127960012 -14311432 - AluJo SINE Alu -92 220 102 229 316 11 0 chr9 127960025 127960120 -14311324 - L1M4 LINE L1 -2648 3498 3403 2128 115 0 3 chr9 127960351 127960638 -14310806 + AluSx SINE Alu 1 286 -26 381 75 0 0 chr9 127960638 127960691 -14310753 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 207 0 0 0 chr9 127960954 127960977 -14310467 + (TTA)n Simple_repeat Simple_repeat 2 24 0 10067 40 4 128 chr9 127960984 127962541 -14308903 - SVA Other Other -20 1366 3 1608 191 7 14 chr9 127962561 127962855 -14308589 - AluJo SINE Alu -20 292 1 2400 87 0 0 chr9 127962901 127963210 -14308234 - AluSc SINE Alu 0 309 1 1547 154 87 47 chr9 127963324 127963622 -14307822 + AluJb SINE Alu 1 310 -2 297 0 0 0 chr9 127964183 127964216 -14307228 + (TA)n Simple_repeat Simple_repeat 2 34 0 2369 92 0 3 chr9 127964216 127964522 -14306922 - AluSc SINE Alu -4 305 1 192 346 62 0 chr9 127964761 127964842 -14306602 - MIR3 SINE MIR -5 203 118 494 50 0 0 chr9 127964847 127964907 -14306537 - U2 snRNA snRNA -128 60 1 436 115 0 0 chr9 127965024 127965085 -14306359 - AluJb SINE Alu -11 301 241 813 118 0 25 chr9 127965086 127965205 -14306239 - AluJb SINE Alu -112 200 85 1249 145 0 0 chr9 127965362 127965548 -14305896 - AluSg1 SINE Alu -11 301 116 819 132 16 0 chr9 127965595 127965716 -14305728 - AluSg1 SINE Alu -186 123 1 22 0 0 0 chr9 127965716 127965738 -14305706 + AT_rich Low_complexity Low_complexity 1 22 0 344 323 75 8 chr9 127966359 127966492 -14304952 + L3b LINE CR1 1431 1572 -11 293 314 150 23 chr9 127966645 127966865 -14304579 + MIR SINE MIR 15 262 0 201 303 136 63 chr9 127967056 127967441 -14304003 - L2 LINE L2 -1213 2101 1746 2217 105 0 0 chr9 127967441 127967735 -14303709 + AluSx SINE Alu 1 294 -18 201 303 136 63 chr9 127967735 127968048 -14303396 - L2 LINE L2 -1568 1746 1352 1010 198 55 0 chr9 127968136 127968338 -14303106 + MER20 DNA MER1_type 1 213 -6 217 289 0 0 chr9 127968605 127968650 -14302794 + L2 LINE L2 3191 3235 -37 2107 267 71 55 chr9 127968659 127969258 -14302186 + L2 LINE L2 2234 2892 -421 766 198 0 0 chr9 127969258 127969395 -14302049 - FLAM_A SINE Alu 0 137 1 2107 267 71 55 chr9 127969395 127969824 -14301620 + L2 LINE L2 2892 3313 0 667 284 68 0 chr9 127969822 127970058 -14301386 + MIR SINE MIR 11 262 0 * 2328 143 29 5 chr9 127970223 127970608 -14300836 + L1MB3 LINE L1 5577 5970 -213 1703 145 28 18 chr9 127970776 127971058 -14300386 + AluSx SINE Alu 20 304 -8 1896 155 0 7 chr9 127971983 127972267 -14299177 + AluJo SINE Alu 2 283 -29 266 241 48 0 chr9 127972294 127972377 -14299067 - L1MC4 LINE L1 -1339 6703 6617 40 37 0 0 chr9 127972727 127972781 -14298663 + AT_rich Low_complexity Low_complexity 1 54 0 2221 122 0 10 chr9 127972877 127973188 -14298256 - AluSx SINE Alu -4 308 1 431 317 69 35 chr9 127973615 127973905 -14297539 - LTR16C LTR ERVL 0 491 192 2183 96 117 27 chr9 127973922 127974256 -14297188 + THE1B LTR MaLR 1 364 0 318 250 198 0 chr9 127974398 127974514 -14296930 - MLT1J LTR MaLR -40 471 333 1037 253 79 46 chr9 127974524 127974852 -14296592 - MLT1J LTR MaLR -152 359 21 1219 266 150 8 chr9 127974937 127975331 -14296113 - LTR16A LTR ERVL 0 450 1 25 75 0 0 chr9 127975347 127975400 -14296044 + AT_rich Low_complexity Low_complexity 1 53 0 282 291 134 16 chr9 127975406 127975533 -14295911 - L2 LINE L2 -1 3312 3171 1716 179 0 0 chr9 127975537 127975828 -14295616 + AluJb SINE Alu 1 291 -21 3754 246 179 46 chr9 127975837 127976475 -14294969 - L2 LINE L2 -230 3083 2531 2320 91 0 3 chr9 127976475 127976771 -14294673 + AluSc SINE Alu 1 295 -14 3754 246 179 46 chr9 127976771 127976965 -14294479 - L2 LINE L2 -782 2531 2364 2317 108 0 0 chr9 127976965 127977260 -14294184 - AluSx SINE Alu -17 295 1 3754 246 179 46 chr9 127977260 127977865 -14293579 - L2 LINE L2 -949 2364 1841 1649 138 101 0 chr9 127977865 127978018 -14293426 - AluSx SINE Alu -8 304 168 189 0 0 0 chr9 127978018 127978039 -14293405 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1649 138 101 0 chr9 127978039 127978161 -14293283 - AluSx SINE Alu -144 168 1 2429 49 0 64 chr9 127978169 127978496 -14292948 - AluY SINE Alu -5 306 1 3754 246 179 46 chr9 127978496 127978767 -14292677 - L2 LINE L2 -1478 1835 1124 428 306 19 25 chr9 127978925 127979085 -14292359 - LTR67 LTR ERVL 0 557 399 2403 72 3 0 chr9 127979197 127979489 -14291955 - AluY SINE Alu -18 293 1 522 163 0 0 chr9 127979554 127979634 -14291810 + AluJ/FLAM SINE Alu 2 81 -231 412 288 98 8 chr9 127979634 127979766 -14291678 - L2 LINE L2 -629 2685 2542 204 164 0 82 chr9 127979819 127980014 -14291430 + CT-rich Low_complexity Low_complexity 2 180 0 836 158 7 43 chr9 127980487 127980626 -14290818 + FRAM SINE Alu 30 163 -13 577 255 161 0 chr9 127980676 127980825 -14290619 - MER5A DNA MER1_type -8 181 9 1118 191 14 5 chr9 127981288 127981498 -14289946 + MER20 DNA MER1_type 7 218 -1 25 0 0 0 chr9 127981522 127981547 -14289897 + AT_rich Low_complexity Low_complexity 1 25 0 1596 177 7 21 chr9 127981550 127981694 -14289750 + AluJo SINE Alu 3 148 -159 2209 143 141 5 chr9 127981694 127982071 -14289373 - MSTA LTR MaLR 0 428 1 1596 177 7 21 chr9 127982071 127982235 -14289209 + AluJo SINE Alu 148 307 0 630 171 87 114 chr9 127982269 127982568 -14288876 - L1MC5 LINE L1 -36 7925 7635 300 136 0 0 chr9 127983246 127983290 -14288154 - MER94 DNA DNA 0 134 91 927 236 39 44 chr9 127983370 127983599 -14287845 - MIR SINE MIR -21 241 14 202 226 19 19 chr9 127983975 127984028 -14287416 + L2 LINE L2 3205 3257 -15 1087 183 230 0 chr9 127984555 127984785 -14286659 - AluSc SINE Alu -16 283 1 2065 129 0 3 chr9 127984823 127985118 -14286326 - AluSx SINE Alu -15 297 4 290 200 0 18 chr9 127985657 127985712 -14285732 - MER91 DNA MER1_type -2 194 141 2594 52 0 0 chr9 127985856 127986163 -14285281 + AluY SINE Alu 1 307 -4 849 257 154 32 chr9 127986251 127986628 -14284816 + L2 LINE L2 2890 3312 -1 2020 115 67 62 chr9 127986639 127986782 -14284662 - THE1B LTR MaLR -3 361 220 2300 115 0 0 chr9 127986782 127987086 -14284358 - AluSx SINE Alu -8 304 1 2020 115 67 62 chr9 127987086 127987299 -14284145 - THE1B LTR MaLR -144 220 3 * 11725 88 17 8 chr9 127987298 127988453 -14282991 - THE1B-int LTR MaLR 0 1580 406 1725 179 20 7 chr9 127988453 127988750 -14282694 + AluSx SINE Alu 1 301 -11 11725 88 17 8 chr9 127988750 127989160 -14282284 - THE1B-int LTR MaLR -1174 406 1 2212 119 51 23 chr9 127989160 127989514 -14281930 - THE1B LTR MaLR 0 364 1 252 276 9 43 chr9 127989624 127989740 -14281704 - MIR SINE MIR -77 185 74 258 275 168 0 chr9 127990039 127990170 -14281274 + MIR SINE MIR 74 226 -36 226 252 140 50 chr9 127991028 127991250 -14280194 + HAL1 LINE L1 2147 2388 -119 1668 183 40 10 chr9 127991392 127991693 -14279751 - AluJo SINE Alu -2 310 1 2174 124 0 3 chr9 127991791 127992082 -14279362 - AluSq SINE Alu -23 290 1 1556 219 106 17 chr9 127992168 127992307 -14279137 + L1M4 LINE L1 5187 5312 -866 2074 123 0 3 chr9 127992307 127992616 -14278828 + AluSx SINE Alu 1 308 0 1556 219 106 17 chr9 127992616 127993017 -14278427 + L1M4 LINE L1 5312 5804 -374 234 156 22 0 chr9 127993188 127993233 -14278211 - Alu SINE Alu -19 147 102 923 174 10 85 chr9 127993239 127993326 -14278118 - AluJo SINE Alu -126 186 94 2150 92 20 23 chr9 127993326 127993629 -14277815 + AluSx SINE Alu 2 303 -9 923 174 10 85 chr9 127993629 127993742 -14277702 - AluJo SINE Alu -218 94 1 189 147 0 0 chr9 127993749 127993783 -14277661 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 2071 125 0 14 chr9 127993801 127994110 -14277334 - AluSx SINE Alu 0 305 1 1819 129 58 24 chr9 127994329 127994462 -14276982 + AluSx SINE Alu 1 128 -184 2300 97 7 0 chr9 127994462 127994762 -14276682 + AluSq SINE Alu 1 302 -11 1819 129 58 24 chr9 127994762 127994922 -14276522 + AluSx SINE Alu 128 304 -8 2105 118 30 0 chr9 127995308 127995604 -14275840 - AluSq SINE Alu -8 305 1 21 0 0 0 chr9 127995606 127995627 -14275817 + AT_rich Low_complexity Low_complexity 1 21 0 314 130 0 0 chr9 127995782 127995828 -14275616 + AluSx SINE Alu 14 59 -241 1782 127 0 0 chr9 127996347 127996592 -14274852 + AluSx SINE Alu 64 308 -4 2182 114 0 13 chr9 127996602 127996901 -14274543 + AluSg SINE Alu 3 297 -13 2286 95 0 3 chr9 127996904 127997199 -14274245 + AluSx SINE Alu 1 294 -18 2333 92 7 0 chr9 127997534 127997837 -14273607 - AluSg SINE Alu -5 305 1 2067 107 41 3 chr9 127997954 127998245 -14273199 - AluSq SINE Alu -11 302 1 2070 142 0 3 chr9 127998327 127998636 -14272808 - AluSx SINE Alu -4 308 1 680 206 0 57 chr9 127998703 127998844 -14272600 - FLAM_A SINE Alu 0 133 1 2391 67 0 27 chr9 127998856 127999153 -14272291 - AluY SINE Alu -21 290 2 205 132 19 19 chr9 127999326 127999379 -14272065 + T-rich Low_complexity Low_complexity 1 53 0 241 121 0 0 chr9 127999386 127999419 -14272025 - Alu SINE Alu -205 95 63 4490 158 31 32 chr9 127999453 127999720 -14271724 + L1MB3 LINE L1 5337 5603 -580 2947 6 0 0 chr9 127999720 128000031 -14271413 + AluY SINE Alu 1 311 0 4490 158 31 32 chr9 128000031 128000609 -14270835 + L1MB3 LINE L1 5603 6181 -2 2278 75 7 0 chr9 128000826 128001105 -14270339 + AluSc SINE Alu 16 296 -13 1359 205 16 50 chr9 128001726 128001929 -14269515 - AluJo SINE Alu -19 293 102 2117 134 39 31 chr9 128001929 128002287 -14269157 - THE1B LTR MaLR -3 361 1 1359 205 16 50 chr9 128002287 128002386 -14269058 - AluJo SINE Alu -210 102 1 2041 143 3 0 chr9 128002436 128002736 -14268708 + AluSx SINE Alu 1 301 -11 242 260 52 0 chr9 128003054 128003131 -14268313 - MIR SINE MIR -54 208 128 2335 92 7 0 chr9 128003212 128003516 -14267928 + AluSq SINE Alu 1 306 -7 2520 60 0 3 chr9 128003516 128003816 -14267628 + AluY SINE Alu 1 299 -12 3107 192 13 4 chr9 128004084 128004641 -14266803 + MER68 LTR ERV1 1 562 0 344 306 38 0 chr9 128004921 128005078 -14266366 - L1 LINE L1 -1807 4339 4177 1596 200 17 0 chr9 128005403 128005693 -14265751 - AluJo SINE Alu -17 295 1 2239 112 0 26 chr9 128006138 128006451 -14264993 + AluSx SINE Alu 1 305 -7 1711 159 23 36 chr9 128006625 128006927 -14264517 + AluJo SINE Alu 1 298 -14 345 262 68 0 chr9 128006981 128007084 -14264360 - L2 LINE L2 -9 3304 3195 2388 85 7 3 chr9 128007094 128007401 -14264043 - AluSx SINE Alu -4 308 1 211 211 0 0 chr9 128007456 128007508 -14263936 - L2 LINE L2 -135 3178 3127 696 270 83 8 chr9 128007516 128007757 -14263687 + MIR SINE MIR 3 261 -1 1779 280 132 15 chr9 128007770 128008694 -14262750 - L2 LINE L2 -208 3105 2067 783 278 41 88 chr9 128009109 128009334 -14262110 + L1MEd LINE L1 563 797 -5460 2343 86 17 0 chr9 128009334 128009635 -14261809 + AluSp SINE Alu 1 306 -7 783 278 41 88 chr9 128009635 128009760 -14261684 + L1MEd LINE L1 797 926 -5331 2402 86 0 0 chr9 128009760 128010061 -14261383 + AluY SINE Alu 3 303 -8 783 278 41 88 chr9 128010061 128010523 -14260921 + L1MEd LINE L1 926 1387 -4870 2219 90 32 0 chr9 128010791 128011068 -14260376 - AluSg SINE Alu -22 288 3 25 0 0 0 chr9 128011073 128011098 -14260346 + AT_rich Low_complexity Low_complexity 1 25 0 2181 112 0 3 chr9 128011428 128011739 -14259705 + AluSx SINE Alu 1 310 0 320 94 19 0 chr9 128011784 128011837 -14259607 + (CA)n Simple_repeat Simple_repeat 2 55 0 1178 258 89 68 chr9 128011859 128012606 -14258838 + HAL1 LINE L1 611 1382 -1125 2136 112 0 7 chr9 128012606 128012901 -14258543 + AluSg SINE Alu 1 293 -17 1178 258 89 68 chr9 128012901 128013047 -14258397 + HAL1 LINE L1 1382 1523 -984 1927 123 60 7 chr9 128013065 128013350 -14258094 + AluSg SINE Alu 1 300 -10 1813 155 4 0 chr9 128013352 128013616 -14257828 + AluSx SINE Alu 3 267 -45 2272 116 3 0 chr9 128013641 128013943 -14257501 + AluSp SINE Alu 1 303 -10 2128 117 0 0 chr9 128013955 128014259 -14257185 + AluSx SINE Alu 1 304 0 392 236 81 35 chr9 128014265 128014439 -14257005 + HAL1 LINE L1 2166 2347 -160 221 324 59 29 chr9 128014604 128014774 -14256670 + MER5B DNA MER1_type 2 176 -2 2489 88 3 0 chr9 128014819 128015127 -14256317 + AluSx SINE Alu 1 309 -3 2379 104 0 0 chr9 128015305 128015612 -14255832 + AluSg SINE Alu 1 307 -3 1601 179 7 10 chr9 128015676 128015966 -14255478 - AluJo SINE Alu -23 289 1 2257 121 0 6 chr9 128016120 128016434 -14255010 - AluSx SINE Alu 0 312 1 2212 113 7 3 chr9 128017055 128017357 -14254087 + AluSp SINE Alu 1 303 -10 2354 97 3 3 chr9 128017784 128018083 -14253361 - AluSp SINE Alu -14 299 1 195 100 0 0 chr9 128018577 128018607 -14252837 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 1710 180 0 20 chr9 128019240 128019540 -14251904 - AluJb SINE Alu -18 294 1 644 183 44 1 chr9 128019812 128019954 -14251490 - L1MA4A LINE L1 -1 6302 6151 886 177 62 100 chr9 128019991 128020048 -14251396 - L1MA9 LINE L1 -154 6158 6100 1765 194 0 3 chr9 128020048 128020352 -14251092 - AluJo SINE Alu -9 303 1 886 177 62 100 chr9 128020352 128020371 -14251073 - L1MA9 LINE L1 -212 6100 6082 2287 107 3 3 chr9 128020371 128020679 -14250765 - AluSx SINE Alu -4 308 1 886 177 62 100 chr9 128020679 128020861 -14250583 - L1MA9 LINE L1 -230 6082 5909 1616 169 67 26 chr9 128020865 128021208 -14250236 + MER46B DNA MER2_type 1 232 -4 2371 110 0 0 chr9 128021345 128021655 -14249789 + AluSx SINE Alu 3 312 0 825 162 0 22 chr9 128021718 128021854 -14249590 - FLAM_C SINE Alu 0 133 1 2034 116 46 0 chr9 128021932 128022216 -14249228 + AluSq SINE Alu 1 297 -16 790 93 27 47 chr9 128022220 128022370 -14249074 + L1MA5A LINE L1 5977 6123 -174 249 33 0 0 chr9 128023033 128023063 -14248381 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2174 64 0 19 chr9 128024073 128024340 -14247104 - AluSq SINE Alu -47 266 5 944 133 7 7 chr9 128024535 128024678 -14246766 - AluJo SINE Alu -82 230 88 342 61 0 0 chr9 128025047 128025096 -14246348 + (CA)n Simple_repeat Simple_repeat 2 50 0 229 307 23 11 chr9 128026307 128026395 -14245049 + GA-rich Low_complexity Low_complexity 3 91 0 1824 104 0 8 chr9 128027802 128028042 -14243402 - AluSx SINE Alu -71 241 4 317 177 16 0 chr9 128028042 128028104 -14243340 - L1MC5 LINE L1 -804 7157 7095 2043 145 0 10 chr9 128028111 128028421 -14243023 - AluSp SINE Alu -6 307 1 2478 74 0 0 chr9 128028433 128028730 -14242714 - AluY SINE Alu -14 297 1 993 97 8 8 chr9 128028730 128028864 -14242580 - AluSq/x SINE Alu -178 134 1 262 163 0 0 chr9 128029024 128029067 -14242377 - Alu SINE Alu -260 43 1 2604 56 3 0 chr9 128029085 128029388 -14242056 + AluY SINE Alu 1 304 -7 502 292 113 0 chr9 128029398 128029655 -14241789 + L1ME3A LINE L1 5666 5951 -219 2068 98 37 20 chr9 128029907 128030203 -14241241 + AluSx SINE Alu 1 301 -11 297 248 139 47 chr9 128030264 128030393 -14241051 - L2 LINE L2 -2 3311 3171 24 85 0 0 chr9 128030520 128030579 -14240865 + AT_rich Low_complexity Low_complexity 1 59 0 24 53 0 0 chr9 128030840 128030878 -14240566 + AT_rich Low_complexity Low_complexity 1 38 0 2341 99 0 0 chr9 128031390 128031684 -14239760 + AluSx SINE Alu 13 306 -6 299 281 34 0 chr9 128031871 128031960 -14239484 + MIR SINE MIR 59 150 -112 1369 192 18 14 chr9 128032211 128032533 -14238911 + AluJo SINE Alu 2 308 0 3054 87 7 12 chr9 128032560 128032985 -14238459 - L1PA8 LINE L1 -35 6137 5715 680 171 0 49 chr9 128033019 128033142 -14238302 + FLAM_C SINE Alu 2 118 -25 187 211 244 22 chr9 128033203 128033293 -14238151 - MIR SINE MIR -71 191 82 28 0 0 0 chr9 128033431 128033459 -14237985 + AT_rich Low_complexity Low_complexity 1 28 0 1920 254 80 28 chr9 128033629 128034192 -14237252 - MLT1G1 LTR MaLR -3 592 1 2327 103 0 0 chr9 128034405 128034706 -14236738 + AluSx SINE Alu 1 301 -11 1134 144 0 44 chr9 128034714 128034895 -14236549 + AluSg/x SINE Alu 129 301 -11 2218 119 0 13 chr9 128035563 128035875 -14235569 + AluSx SINE Alu 1 308 -4 2378 105 0 0 chr9 128036303 128036608 -14234836 + AluSg SINE Alu 1 305 -5 1677 182 0 7 chr9 128036623 128036914 -14234530 + AluJb SINE Alu 7 295 -17 1781 175 0 3 chr9 128037077 128037368 -14234076 + AluSx SINE Alu 4 293 -19 2229 72 11 0 chr9 128037489 128037766 -14233678 + AluY SINE Alu 1 280 -31 401 39 39 0 chr9 128037714 128037766 -14233678 + AluY SINE Alu 226 311 0 223 62 0 0 chr9 128037766 128037798 -14233646 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2194 190 14 81 chr9 128038205 128038762 -14232682 - MLT2B1 LTR ERVL 0 520 1 2132 116 0 0 chr9 128038943 128039228 -14232216 + AluSx SINE Alu 11 295 -17 2115 129 10 0 chr9 128039245 128039548 -14231896 + AluSg SINE Alu 1 306 -4 1750 127 4 12 chr9 128039585 128039844 -14231600 + AluSx SINE Alu 44 300 -12 381 43 0 0 chr9 128039898 128039945 -14231499 + (CA)n Simple_repeat Simple_repeat 2 48 0 649 187 17 126 chr9 128040104 128040334 -14231110 - MLT1F1 LTR MaLR -150 417 213 279 0 0 0 chr9 128040387 128040418 -14231026 + (TG)n Simple_repeat Simple_repeat 1 31 0 806 219 34 60 chr9 128040521 128040544 -14230900 - MLT1F1 LTR MaLR -340 227 205 237 98 0 0 chr9 128040544 128040585 -14230859 + (TG)n Simple_repeat Simple_repeat 1 41 0 806 219 34 60 chr9 128040585 128040794 -14230650 - MLT1F1 LTR MaLR -362 205 1 667 186 73 0 chr9 128041400 128041524 -14229920 - FLAM_C SINE Alu 0 133 1 430 178 10 20 chr9 128041732 128041833 -14229611 + AluSq/x SINE Alu 11 110 -202 356 301 124 16 chr9 128041938 128042124 -14229320 - L2 LINE L2 -411 2903 2698 1852 108 0 0 chr9 128042131 128042372 -14229072 + AluSx SINE Alu 1 241 -71 2437 93 0 0 chr9 128042428 128042730 -14228714 - AluSx SINE Alu -4 308 7 533 218 143 42 chr9 128042741 128042862 -14228582 + L1ME1 LINE L1 5888 5995 -1435 2321 84 0 0 chr9 128042862 128043171 -14228273 - AluSx SINE Alu 0 309 1 533 218 143 42 chr9 128043171 128043467 -14227977 + L1ME1 LINE L1 5995 7429 -1 1529 129 140 30 chr9 128043491 128043755 -14227689 - AluSc SINE Alu -16 293 1 458 208 67 20 chr9 128043756 128043905 -14227539 + L1MC5 LINE L1 7417 7572 -389 640 167 0 83 chr9 128043919 128044063 -14227381 - FLAM_C SINE Alu 0 133 2 22 0 0 0 chr9 128044073 128044095 -14227349 + AT_rich Low_complexity Low_complexity 1 22 0 2243 94 7 10 chr9 128044098 128044405 -14227039 + AluSx SINE Alu 3 308 -4 2200 142 0 0 chr9 128045073 128045383 -14226061 - AluSg SINE Alu 0 310 1 270 329 80 40 chr9 128045428 128045653 -14225791 + L2 LINE L2 2185 2418 -896 2247 102 7 0 chr9 128045663 128045958 -14225486 + AluSg SINE Alu 6 302 -8 951 160 67 40 chr9 128045998 128046078 -14225366 + L1ME LINE L1 5177 5253 -909 1915 139 17 3 chr9 128046078 128046373 -14225071 + AluSq SINE Alu 1 299 -14 951 160 67 40 chr9 128046373 128046597 -14224847 + L1ME LINE L1 5253 5471 -691 503 252 0 0 chr9 128046600 128046711 -14224733 + L1MA10 LINE L1 6223 6333 -1 1014 191 91 0 chr9 128046786 128046985 -14224459 - MER20 DNA MER1_type 0 219 3 180 0 0 0 chr9 128047451 128047471 -14223973 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2325 78 3 0 chr9 128047661 128047944 -14223500 - AluSp SINE Alu -29 284 1 1902 146 0 3 chr9 128048338 128048625 -14222819 + AluSx SINE Alu 1 286 -26 2281 104 13 0 chr9 128048656 128048964 -14222480 + AluSp SINE Alu 1 312 -1 1629 122 13 0 chr9 128049186 128049416 -14222028 - AluJb SINE Alu -14 298 66 2337 105 0 0 chr9 128049523 128049828 -14221616 - AluSg SINE Alu -4 306 2 2147 104 35 0 chr9 128049840 128050129 -14221315 - AluSx SINE Alu -13 299 1 332 276 41 10 chr9 128050442 128050540 -14220904 - L2 LINE L2 0 3313 3213 2288 104 0 3 chr9 128050676 128050974 -14220470 - AluSx SINE Alu -15 297 1 471 259 104 16 chr9 128051237 128051318 -14220126 - MIR SINE MIR -5 257 185 2427 91 0 10 chr9 128051318 128051495 -14219949 - AluSp SINE Alu -3 310 136 2302 86 7 0 chr9 128051495 128051786 -14219658 - AluY SINE Alu -18 293 1 2427 91 0 10 chr9 128051786 128051916 -14219528 - AluSp SINE Alu -177 136 6 471 259 104 16 chr9 128051916 128052027 -14219417 - MIR SINE MIR -77 185 48 1537 201 31 14 chr9 128052203 128052529 -14218915 + AluJb SINE Alu 1 312 0 1476 148 47 65 chr9 128052944 128053017 -14218427 - Charlie5 DNA MER1_type -14 2610 2537 1711 161 58 3 chr9 128053017 128053309 -14218135 + AluJb SINE Alu 1 308 -4 2107 124 3 0 chr9 128053318 128053608 -14217836 + AluSq SINE Alu 1 291 -22 1476 148 47 65 chr9 128053608 128053644 -14217800 - Charlie5 DNA MER1_type -95 2529 2494 1678 179 0 17 chr9 128053644 128053945 -14217499 + AluJb SINE Alu 1 296 -16 1476 148 47 65 chr9 128053945 128054208 -14217236 - Charlie5 DNA MER1_type -130 2494 2234 516 194 83 0 chr9 128054215 128054323 -14217121 - Charlie5 DNA MER1_type -2495 117 1 946 250 44 8 chr9 128054757 128055009 -14216435 + MIR SINE MIR 2 262 0 912 159 6 57 chr9 128055009 128055185 -14216259 - AluJ SINE Alu -26 286 120 276 45 0 0 chr9 128055188 128055232 -14216212 - L1MA3 LINE L1 0 6305 6262 923 137 0 0 chr9 128055233 128055364 -14216080 - AluJ SINE Alu -171 141 11 245 282 23 23 chr9 128056100 128056274 -14215170 + (CCCCG)n Simple_repeat Simple_repeat 2 175 0 270 279 29 23 chr9 128056288 128056460 -14214984 + C-rich Low_complexity Low_complexity 1 173 0 255 194 181 0 chr9 128058690 128058762 -14212682 + MIR SINE MIR 51 135 -73 800 164 8 15 chr9 128058820 128058954 -14212490 + FLAM_C SINE Alu 1 133 0 205 271 85 0 chr9 128059058 128059117 -14212327 - MIR SINE MIR -190 72 9 29 28 0 0 chr9 128062590 128062626 -14208818 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr9 128063494 128063518 -14207926 + (TG)n Simple_repeat Simple_repeat 2 25 0 2344 85 3 3 chr9 128065621 128065915 -14205529 + AluSq SINE Alu 1 294 -19 2372 97 0 10 chr9 128066063 128066372 -14205072 + AluSx SINE Alu 1 306 -6 1719 174 84 3 chr9 128067245 128067567 -14203877 - MER7A DNA MER2_type 0 346 1 1701 158 10 53 chr9 128067971 128068274 -14203170 - AluJo SINE Alu -18 294 5 2475 59 0 10 chr9 128068694 128068998 -14202446 + AluY SINE Alu 1 301 -10 24 32 0 0 chr9 128069259 128069290 -14202154 + AT_rich Low_complexity Low_complexity 1 31 0 2171 100 14 3 chr9 128069356 128069645 -14201799 - AluSc SINE Alu -17 292 1 297 51 0 0 chr9 128069814 128069853 -14201591 + (TC)n Simple_repeat Simple_repeat 1 39 0 2098 84 16 52 chr9 128069889 128070055 -14201389 - AluSx SINE Alu -15 297 145 1251 63 0 0 chr9 128070055 128070213 -14201231 - L1PA5 LINE L1 -2 6152 5995 2098 84 16 52 chr9 128070213 128070354 -14201090 - AluSx SINE Alu -167 145 1 310 173 77 48 chr9 128070442 128070546 -14200898 + L1ME LINE L1 5712 5818 -303 186 103 0 0 chr9 128070614 128070643 -14200801 + (CA)n Simple_repeat Simple_repeat 2 30 0 263 228 20 119 chr9 128070692 128070758 -14200686 - MER5A DNA MER1_type -56 133 79 2211 122 0 0 chr9 128070758 128071062 -14200382 - AluSc SINE Alu -5 304 1 263 228 20 119 chr9 128071062 128071096 -14200348 - MER5A DNA MER1_type -110 79 43 2264 101 7 13 chr9 128071729 128072036 -14199408 - AluSg SINE Alu -4 306 2 2379 75 3 44 chr9 128072101 128072422 -14199022 - AluSp SINE Alu -5 308 1 24 22 0 43 chr9 128072425 128072448 -14198996 + AT_rich Low_complexity Low_complexity 1 23 -21 942 138 0 0 chr9 128072448 128072578 -14198866 - FLAM_A SINE Alu -2 131 2 24 22 0 43 chr9 128072578 128072600 -14198844 + AT_rich Low_complexity Low_complexity 23 44 0 2231 78 10 39 chr9 128072804 128073111 -14198333 + AluSc SINE Alu 1 298 -11 2165 98 78 29 chr9 128073445 128073792 -14197652 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr9 128074489 128074510 -14196934 + AT_rich Low_complexity Low_complexity 1 21 0 1661 192 31 0 chr9 128074517 128074804 -14196640 - AluJo SINE Alu -12 300 5 594 14 0 0 chr9 128075232 128075306 -14196138 - AluY SINE Alu -235 74 1 589 181 81 12 chr9 128075357 128075517 -14195927 - Charlie1 DNA MER1_type 0 2761 2591 1125 132 0 6 chr9 128075522 128075681 -14195763 + AluSp SINE Alu 137 294 -19 1630 168 41 52 chr9 128075683 128076060 -14195384 - Charlie1 DNA MER1_type -163 2598 2224 2069 156 0 0 chr9 128076060 128076367 -14195077 - AluSx SINE Alu -5 307 1 692 225 0 7 chr9 128076405 128076543 -14194901 - Charlie1 DNA MER1_type -1183 1578 1442 2321 92 7 0 chr9 128076874 128077169 -14194275 - AluSq SINE Alu -16 297 1 2299 104 3 0 chr9 128077171 128077469 -14193975 - AluSg SINE Alu -9 301 3 198 270 125 46 chr9 128077561 128077713 -14193731 + MIR SINE MIR 49 212 -50 2363 88 0 7 chr9 128078651 128078948 -14192496 - AluSg SINE Alu -14 296 2 253 240 77 58 chr9 128079801 128079905 -14191539 - MER4-int LTR ERV1 -5382 1216 1111 216 0 0 0 chr9 128079905 128079929 -14191515 + (TA)n Simple_repeat Simple_repeat 2 25 0 2338 109 0 0 chr9 128079963 128080266 -14191178 - AluSx SINE Alu -9 303 1 2595 153 93 107 chr9 128080307 128080626 -14190818 + L1MD2 LINE L1 5601 5923 -436 1901 143 37 3 chr9 128080626 128080920 -14190524 - AluSx SINE Alu -8 304 1 2595 153 93 107 chr9 128080920 128081125 -14190319 + L1MD2 LINE L1 5923 6115 -244 486 46 0 0 chr9 128081125 128081190 -14190254 + (CA)n Simple_repeat Simple_repeat 2 66 0 2595 153 93 107 chr9 128081190 128081344 -14190100 + L1MD2 LINE L1 6115 6270 -89 1899 146 9 19 chr9 128081407 128081543 -14189901 + AluSx SINE Alu 1 137 -175 2175 100 27 7 chr9 128081543 128081842 -14189602 + AluSg SINE Alu 1 305 -5 1899 146 9 19 chr9 128081842 128082020 -14189424 + AluSx SINE Alu 137 312 0 2212 104 7 7 chr9 128082029 128082326 -14189118 - AluSc SINE Alu -12 297 1 979 89 0 0 chr9 128082878 128083001 -14188443 - AluSg/x SINE Alu -15 297 175 2369 86 0 0 chr9 128083043 128083335 -14188109 + AluSx SINE Alu 2 293 -19 1954 100 4 4 chr9 128083346 128083606 -14187838 + AluSp SINE Alu 14 273 -40 1722 169 7 14 chr9 128084094 128084378 -14187066 + AluJo SINE Alu 1 282 -30 22 56 0 0 chr9 128084390 128084426 -14187018 + AT_rich Low_complexity Low_complexity 1 36 0 2385 89 0 10 chr9 128084565 128084879 -14186565 - AluSx SINE Alu -1 311 1 1765 129 44 34 chr9 128084910 128085204 -14186240 - AluSx SINE Alu -11 301 5 2560 44 0 0 chr9 128085736 128086029 -14185415 + AluY SINE Alu 1 293 -18 2226 75 10 30 chr9 128086137 128086481 -14184963 + AluSx SINE Alu 1 312 0 21 0 0 0 chr9 128087225 128087246 -14184198 + GC_rich Low_complexity Low_complexity 1 21 0 264 170 0 0 chr9 128087374 128087427 -14184017 + (CGG)n Simple_repeat Simple_repeat 3 55 0 277 176 235 12 chr9 128088108 128088193 -14183251 + L2 LINE L2 3185 3288 -25 327 282 10 10 chr9 128088196 128088299 -14183145 - L2 LINE L2 -1 3312 3210 1152 126 11 0 chr9 128088307 128088481 -14182963 + AluSg/x SINE Alu 114 289 -21 237 262 131 0 chr9 128088485 128088569 -14182875 - L2 LINE L2 -612 2702 2608 222 37 0 0 chr9 128088573 128088600 -14182844 + L2 LINE L2 3276 3302 -11 359 195 21 39 chr9 128088646 128088751 -14182693 + L1MC4 LINE L1 7923 8041 -1 348 276 98 8 chr9 128088797 128088833 -14182611 - L2 LINE L2 -1 3312 3281 1643 115 146 8 chr9 128088833 128089093 -14182351 + AluSx SINE Alu 1 296 -16 348 276 98 8 chr9 128089093 128089179 -14182265 - L2 LINE L2 -32 3281 3179 489 65 0 78 chr9 128089196 128089273 -14182171 - MER21A LTR ERV1 -351 580 510 547 206 69 46 chr9 128089278 128089296 -14182148 - AluJo SINE Alu -177 135 119 1535 172 93 0 chr9 128089296 128089564 -14181880 + AluSx SINE Alu 1 293 -19 547 206 69 46 chr9 128089564 128089676 -14181768 - AluJo SINE Alu -193 119 2 784 205 37 6 chr9 128089775 128089936 -14181508 + FRAM SINE Alu 1 166 0 2232 123 0 22 chr9 128089984 128090301 -14181143 + AluSg SINE Alu 1 310 0 1332 89 6 0 chr9 128090302 128090471 -14180973 + AluSg/x SINE Alu 121 290 -22 568 205 23 183 chr9 128090523 128090749 -14180695 + MIR SINE MIR 32 212 -50 1748 175 10 32 chr9 128090749 128091063 -14180381 + AluJb SINE Alu 1 307 -5 568 205 23 183 chr9 128091063 128091099 -14180345 + MIR SINE MIR 212 252 -10 2272 106 7 0 chr9 128091176 128091477 -14179967 + AluSx SINE Alu 1 303 -9 2167 142 0 0 chr9 128091512 128091815 -14179629 + AluJb SINE Alu 1 303 -9 1926 99 58 31 chr9 128091927 128092221 -14179223 + AluSc SINE Alu 1 302 -7 2505 66 0 3 chr9 128092556 128092858 -14178586 + AluY SINE Alu 1 301 -10 2192 121 0 40 chr9 128093560 128093883 -14177561 - AluSx SINE Alu -2 310 1 245 211 156 44 chr9 128094334 128094424 -14177020 + MIR SINE MIR 42 141 -67 565 152 0 0 chr9 128094435 128094514 -14176930 + AluSx SINE Alu 2 80 -233 1095 178 13 26 chr9 128094623 128094854 -14176590 + AluSx SINE Alu 83 310 0 2158 124 7 0 chr9 128094863 128095161 -14176283 - AluSg SINE Alu -10 300 1 1954 155 0 7 chr9 128095873 128096170 -14175274 + AluSx SINE Alu 1 295 -17 2207 110 13 7 chr9 128096172 128096480 -14174964 + AluSx SINE Alu 1 310 -2 2563 42 0 16 chr9 128096602 128096911 -14174533 + AluY SINE Alu 1 304 -7 1195 305 68 34 chr9 128097028 128097619 -14173825 - L2 LINE L2 -2 3311 2684 2065 141 0 3 chr9 128097619 128097924 -14173520 + AluJb SINE Alu 1 304 -8 1195 305 68 34 chr9 128097924 128098244 -14173200 - L2 LINE L2 -629 2684 2376 5565 109 53 56 chr9 128098268 128098338 -14173106 - L1MC1 LINE L1 -4 6329 6260 2399 73 7 3 chr9 128098338 128098639 -14172805 + AluY SINE Alu 1 302 -9 5565 109 53 56 chr9 128098639 128098661 -14172783 - L1MC1 LINE L1 -73 6260 6239 722 150 0 57 chr9 128098661 128098801 -14172643 + FLAM_C SINE Alu 2 133 0 5565 109 53 56 chr9 128098801 128099752 -14171692 - L1MC1 LINE L1 -94 6239 5291 752 211 14 46 chr9 128100117 128100178 -14171266 - L1M4 LINE L1 -814 5332 5271 2242 105 3 3 chr9 128100178 128100474 -14170970 + AluSp SINE Alu 1 296 -17 752 211 14 46 chr9 128100474 128100630 -14170814 - L1M4 LINE L1 -875 5271 5122 27 0 0 0 chr9 128100685 128100712 -14170732 + AT_rich Low_complexity Low_complexity 1 27 0 303 304 49 0 chr9 128100785 128100887 -14170557 + L2 LINE L2 2911 3017 -296 2311 129 3 0 chr9 128100888 128101199 -14170245 - AluSx SINE Alu 0 312 1 871 149 40 35 chr9 128101209 128101410 -14170034 - L1MB7 LINE L1 0 6184 5983 22 0 0 0 chr9 128101568 128101590 -14169854 + AT_rich Low_complexity Low_complexity 1 22 0 2273 102 7 0 chr9 128101670 128101965 -14169479 - AluSq SINE Alu -16 297 1 4882 87 82 4 chr9 128102580 128103325 -14168119 - L1PA8 LINE L1 0 6172 5370 645 226 0 0 chr9 128103606 128103721 -14167723 + FLAM_C SINE Alu 2 116 -27 192 163 0 0 chr9 128103721 128103764 -14167680 + (CTAA)n Simple_repeat Simple_repeat 3 45 0 902 168 89 65 chr9 128103902 128104116 -14167328 - MER20 DNA MER1_type 0 219 1 231 256 0 64 chr9 128104223 128104301 -14167143 + L2 LINE L2 2298 2370 -944 257 367 129 36 chr9 128104865 128105222 -14166222 + L2 LINE L2 2871 3260 -12 1509 217 16 22 chr9 128105222 128105352 -14166092 + AluJo SINE Alu 1 130 -182 2254 111 0 7 chr9 128105352 128105649 -14165795 + AluSc SINE Alu 2 296 -13 1509 217 16 22 chr9 128105649 128105832 -14165612 + AluJo SINE Alu 130 312 0 1920 128 50 30 chr9 128105936 128106233 -14165211 + AluSx SINE Alu 1 303 -9 1991 117 11 0 chr9 128107999 128108282 -14163162 - AluSx SINE Alu -22 290 5 1838 128 37 7 chr9 128108537 128108834 -14162610 + AluSg SINE Alu 1 306 -4 732 224 0 8 chr9 128108835 128108969 -14162475 + FLAM_A SINE Alu 1 133 0 2285 94 3 3 chr9 128109219 128109516 -14161928 + AluSx SINE Alu 1 297 -15 418 297 34 76 chr9 128110153 128110250 -14161194 - MIR SINE MIR 0 262 162 2066 95 14 18 chr9 128110250 128110535 -14160909 + AluSc SINE Alu 24 307 -2 418 297 34 76 chr9 128110535 128110673 -14160771 - MIR SINE MIR -100 162 37 999 158 13 0 chr9 128110864 128111022 -14160422 + AluSq SINE Alu 137 296 -17 327 213 181 11 chr9 128111036 128111130 -14160314 - L2 LINE L2 -5 3308 3199 2308 104 10 0 chr9 128111790 128112089 -14159355 + AluSq SINE Alu 1 302 -11 2321 93 10 0 chr9 128112206 128112508 -14158936 + AluSg SINE Alu 1 305 -5 2342 99 0 0 chr9 128112843 128113137 -14158307 - AluSx SINE Alu -18 294 1 2545 47 3 0 chr9 128113202 128113498 -14157946 - AluY SINE Alu -14 297 1 1734 174 7 3 chr9 128113540 128113838 -14157606 + AluJo SINE Alu 1 299 -13 879 206 0 29 chr9 128113995 128114165 -14157279 - FRAM SINE Alu -1 165 1 442 168 131 19 chr9 128114185 128114292 -14157152 - MER69 DNA AcHobo -2393 133 15 1370 169 16 32 chr9 128114456 128114704 -14156740 + AluJo SINE Alu 61 304 -8 1699 184 0 26 chr9 128114704 128115008 -14156436 + AluJb SINE Alu 1 296 -16 2229 136 0 51 chr9 128115196 128115549 -14155895 + MER1B DNA MER1_type 3 337 0 2335 86 3 20 chr9 128115733 128115861 -14155583 + AluSp SINE Alu 11 140 -173 2213 97 17 0 chr9 128115861 128116151 -14155293 + AluSq SINE Alu 6 300 -13 2335 86 3 20 chr9 128116151 128116324 -14155120 + AluSp SINE Alu 140 307 -6 976 147 40 0 chr9 128116324 128116501 -14154943 + AluSg/x SINE Alu 134 312 0 679 200 159 0 chr9 128116508 128116653 -14154791 + FAM SINE Alu 1 168 -7 211 352 86 9 chr9 128116956 128117061 -14154383 + MIR3 SINE MIR 3 115 -93 201 329 55 0 chr9 128117128 128117201 -14154243 - L2 LINE L2 0 3272 3196 2508 66 3 0 chr9 128117833 128118137 -14153307 - AluY SINE Alu -6 305 1 1577 152 16 4 chr9 128118334 128118590 -14152854 - AluJb SINE Alu -21 291 33 987 89 0 0 chr9 128118867 128118990 -14152454 - AluSg/x SINE Alu -15 297 175 2381 86 0 0 chr9 128119032 128119324 -14152120 + AluSx SINE Alu 2 293 -19 1898 106 40 4 chr9 128119335 128119608 -14151836 + AluSp SINE Alu 14 296 -17 1744 167 7 14 chr9 128120082 128120364 -14151080 + AluJo SINE Alu 1 280 -32 22 56 0 0 chr9 128120378 128120414 -14151030 + AT_rich Low_complexity Low_complexity 1 36 0 2413 96 0 0 chr9 128120553 128120865 -14150579 - AluSx SINE Alu 0 312 1 1795 129 44 34 chr9 128120896 128121190 -14150254 - AluSx SINE Alu -11 301 5 2563 44 0 0 chr9 128121724 128122017 -14149427 + AluY SINE Alu 1 293 -18 2282 93 10 0 chr9 128122125 128122425 -14149019 + AluSx SINE Alu 1 303 -9 2125 148 0 0 chr9 128122460 128122763 -14148681 + AluJb SINE Alu 1 303 -9 1920 99 58 31 chr9 128122876 128123170 -14148274 + AluSc SINE Alu 1 302 -7 2505 66 0 3 chr9 128123505 128123807 -14147637 + AluY SINE Alu 1 301 -10 2187 123 0 40 chr9 128124509 128124833 -14146611 - AluSx SINE Alu -1 311 1 245 211 156 44 chr9 128125283 128125373 -14146071 + MIR SINE MIR 42 141 -67 2180 142 0 0 chr9 128125384 128125693 -14145751 + AluSx SINE Alu 2 310 -2 2282 76 7 26 chr9 128125712 128126015 -14145429 + AluSg1 SINE Alu 1 297 -12 2063 127 10 0 chr9 128126074 128126366 -14145078 + AluSx SINE Alu 4 298 -14 364 262 90 41 chr9 128126764 128126909 -14144535 - MIR SINE MIR -52 210 59 1129 90 14 0 chr9 128126909 128127053 -14144391 - AluSg/x SINE Alu -18 294 149 2222 112 3 0 chr9 128127060 128127347 -14144097 - AluSg SINE Alu -22 288 1 251 235 33 131 chr9 128127645 128127729 -14143715 - MIR SINE MIR -28 234 170 2288 81 0 29 chr9 128127729 128128037 -14143407 - AluSg SINE Alu -11 299 1 251 235 33 131 chr9 128128037 128128105 -14143339 - MIR SINE MIR -92 170 97 2851 10 0 6 chr9 128128378 128128689 -14142755 + AluYb8 SINE Alu 1 309 -9 291 167 0 15 chr9 128128729 128128795 -14142649 - Alu SINE Alu 0 302 238 435 330 52 17 chr9 128129766 128129939 -14141505 - L2 LINE L2 -213 3059 2881 730 176 0 8 chr9 128130075 128130194 -14141250 + AluJo/FLAM SINE Alu 1 118 -194 517 100 0 12 chr9 128130188 128130268 -14141176 - AluSc SINE Alu -7 302 224 * 203 0 0 36 chr9 128130381 128130409 -14141035 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1447 190 17 20 chr9 128130481 128130598 -14140846 + AluJo SINE Alu 17 133 -179 2289 96 0 20 chr9 128130598 128130899 -14140545 + AluSg SINE Alu 2 296 -14 1447 190 17 20 chr9 128130899 128131076 -14140368 + AluJo SINE Alu 133 310 -2 23 0 0 0 chr9 128131208 128131231 -14140213 + AT_rich Low_complexity Low_complexity 1 23 0 920 158 0 0 chr9 128131231 128131364 -14140080 + FLAM_C SINE Alu 1 133 0 2600 50 3 0 chr9 128131455 128131755 -14139689 - AluY SINE Alu -10 301 1 835 173 0 0 chr9 128131834 128131967 -14139477 + FLAM_C SINE Alu 1 133 0 619 205 26 0 chr9 128132025 128132142 -14139302 - FLAM_A SINE Alu -13 120 1 396 302 55 50 chr9 128132222 128132257 -14139187 - MIR SINE MIR -60 202 169 2040 138 14 0 chr9 128132257 128132548 -14138896 + AluJb SINE Alu 1 295 -17 396 302 55 50 chr9 128132548 128132694 -14138750 - MIR SINE MIR -93 169 20 2305 98 0 7 chr9 128133026 128133322 -14138122 + AluSg SINE Alu 1 294 -16 1529 203 7 10 chr9 128133362 128133662 -14137782 - AluJo SINE Alu -13 299 1 194 352 0 33 chr9 128133742 128133833 -14137611 - MIR SINE MIR -56 206 119 2427 97 3 0 chr9 128133836 128134146 -14137298 + AluSx SINE Alu 1 311 -1 2527 72 0 0 chr9 128134348 128134652 -14136792 - AluY SINE Alu -7 304 1 2322 81 7 0 chr9 128134748 128135043 -14136401 - AluSp SINE Alu -16 297 1 762 214 0 0 chr9 128135162 128135293 -14136151 + FLAM_C SINE Alu 1 131 -12 553 114 34 0 chr9 128135351 128135439 -14136005 - AluSg/x SINE Alu -13 299 209 511 261 17 0 chr9 128135683 128135798 -14135646 + AluSg/x SINE Alu 175 291 -18 407 273 0 0 chr9 128135806 128135894 -14135550 - L2 LINE L2 -29 3284 3197 302 306 0 31 chr9 128135901 128135999 -14135445 - L3 LINE CR1 -268 1309 1215 1103 152 12 0 chr9 128136312 128136483 -14134961 - AluSg/x SINE Alu -4 306 134 2533 93 0 0 chr9 128136485 128136797 -14134647 - AluSx SINE Alu 0 312 1 1696 160 17 10 chr9 128136798 128137086 -14134358 - AluSx SINE Alu -22 290 1 2160 136 0 7 chr9 128137086 128137393 -14134051 - AluSx SINE Alu -6 306 1 1296 174 32 16 chr9 128137428 128137675 -14133769 + AluJb SINE Alu 60 310 -2 372 303 131 30 chr9 128137967 128138045 -14133399 - L3 LINE CR1 -25 1552 1483 2245 89 0 33 chr9 128138045 128138348 -14133096 + AluSx SINE Alu 9 301 -11 372 303 131 30 chr9 128138348 128138536 -14132908 - L3 LINE CR1 -94 1483 1259 2275 106 0 0 chr9 128138566 128138881 -14132563 - AluSp SINE Alu 0 315 1 2228 112 0 3 chr9 128138881 128139185 -14132259 - AluSg SINE Alu -6 304 1 937 118 15 7 chr9 128139189 128139325 -14132119 - AluSq/x SINE Alu -175 137 1 1738 150 3 72 chr9 128139425 128139601 -14131843 - AluSq SINE Alu -5 298 152 2207 113 0 45 chr9 128139601 128139776 -14131668 - AluSx SINE Alu -12 300 144 2324 105 0 10 chr9 128139776 128140090 -14131354 - AluY SINE Alu 0 311 1 2207 113 0 45 chr9 128140090 128140224 -14131220 - AluSx SINE Alu -168 144 5 1738 150 3 72 chr9 128140224 128140367 -14131077 - AluSq SINE Alu -151 152 1 1976 138 0 7 chr9 128140368 128140666 -14130778 - AluSq SINE Alu -17 296 1 840 149 0 0 chr9 128140675 128140796 -14130648 - FLAM_A SINE Alu -12 121 1 474 276 100 64 chr9 128140878 128141015 -14130429 + MIR SINE MIR 2 153 -109 2105 110 0 7 chr9 128141015 128141314 -14130130 + AluY SINE Alu 1 297 -14 474 276 100 64 chr9 128141314 128141426 -14130018 + MIR SINE MIR 153 260 -2 1764 138 6 31 chr9 128141540 128141859 -14129585 - AluSq SINE Alu -2 311 1 865 183 37 0 chr9 128142016 128142180 -14129264 - FRAM SINE Alu -7 169 1 332 231 45 0 chr9 128142180 128142292 -14129152 + L1M1 LINE L1 5696 5819 -302 977 116 0 94 chr9 128142293 128142474 -14128970 - AluSg/x SINE Alu -15 295 132 1704 114 52 14 chr9 128142474 128142764 -14128680 - AluSq SINE Alu -12 301 1 670 192 0 8 chr9 128142791 128142911 -14128533 + FLAM_C SINE Alu 1 119 -14 338 266 231 35 chr9 128142938 128143026 -14128418 + L1ME4a LINE L1 5822 5892 -229 2097 118 0 3 chr9 128143026 128143331 -14128113 - AluSx SINE Alu -6 306 3 338 266 231 35 chr9 128143331 128143411 -14128033 + L1ME4a LINE L1 5892 6023 -98 310 302 35 0 chr9 128143410 128143496 -14127948 - L1MC4 LINE L1 -1349 6693 6605 * 567 143 0 31 chr9 128143688 128143786 -14127658 + AluJo SINE Alu 40 134 -178 2123 104 7 3 chr9 128143788 128144097 -14127347 + AluSx SINE Alu 1 310 -2 2043 118 7 0 chr9 128144244 128144548 -14126896 - AluSx SINE Alu -6 306 1 1735 146 25 0 chr9 128144560 128144878 -14126566 - AluSx SINE Alu 0 325 1 2096 110 0 16 chr9 128145459 128145767 -14125677 + AluSx SINE Alu 1 303 -9 1408 191 3 67 chr9 128145931 128146064 -14125380 + AluJo SINE Alu 1 141 -171 1762 143 48 0 chr9 128146064 128146182 -14125262 + AluSx SINE Alu 5 116 -196 207 0 0 0 chr9 128146182 128146205 -14125239 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1762 143 48 0 chr9 128146205 128146379 -14125065 + AluSx SINE Alu 116 311 -1 1408 191 3 67 chr9 128146379 128146575 -14124869 + AluJo SINE Alu 141 309 -3 263 307 23 0 chr9 128146655 128146731 -14124713 - MIR SINE MIR -108 154 74 1488 164 0 25 chr9 128146731 128147005 -14124439 + AluJb SINE Alu 1 267 -45 263 307 23 0 chr9 128147005 128147016 -14124428 - MIR SINE MIR -188 74 65 243 61 0 0 chr9 128147018 128147051 -14124393 + (GA)n Simple_repeat Simple_repeat 2 34 0 294 300 30 20 chr9 128147311 128147411 -14124033 - MIR SINE MIR -114 148 48 2318 57 0 35 chr9 128147415 128147733 -14123711 - AluY SINE Alu -4 307 1 1098 127 0 0 chr9 128148190 128148348 -14123096 + AluSg/x SINE Alu 128 285 -25 207 0 0 0 chr9 128148351 128148374 -14123070 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 537 231 266 0 chr9 128148508 128148707 -14122737 - MIR SINE MIR -9 253 2 2172 91 0 19 chr9 128148772 128149081 -14122363 - AluSg SINE Alu -7 303 1 197 286 53 138 chr9 128149081 128149270 -14122174 - L2 LINE L2 -28 3285 3113 28 0 0 0 chr9 128149332 128149360 -14122084 + AT_rich Low_complexity Low_complexity 1 28 0 823 255 80 28 chr9 128149446 128149472 -14121972 + L1ME4a LINE L1 5382 5405 -716 1772 126 36 0 chr9 128149472 128149750 -14121694 - AluSx SINE Alu -24 288 1 823 255 80 28 chr9 128149750 128150146 -14121298 + L1ME4a LINE L1 5405 5826 -295 1897 139 7 7 chr9 128150146 128150441 -14121003 + AluJb SINE Alu 1 295 -17 2165 114 3 0 chr9 128150666 128150972 -14120472 + AluSp SINE Alu 1 307 -6 312 212 165 0 chr9 128150997 128151082 -14120362 + L1ME4a LINE L1 6023 6121 0 182 36 0 36 chr9 128151222 128151250 -14120194 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1014 226 9 5 chr9 128151322 128151539 -14119905 - MER20 DNA MER1_type 0 219 2 304 289 19 75 chr9 128151544 128151608 -14119836 + MIR3 SINE MIR 42 108 -100 2059 113 3 13 chr9 128151608 128151919 -14119525 - AluSx SINE Alu -4 308 1 304 289 19 75 chr9 128151919 128152013 -14119431 + MIR3 SINE MIR 108 191 -17 210 250 0 0 chr9 128152162 128152210 -14119234 + (TATG)n Simple_repeat Simple_repeat 3 50 0 1870 118 3 67 chr9 128152790 128153120 -14118324 + AluSc SINE Alu 1 309 0 260 243 54 0 chr9 128153138 128153212 -14118232 + MLT1K LTR MaLR 511 588 0 2125 101 27 0 chr9 128153240 128153538 -14117906 + AluY SINE Alu 1 306 -5 264 263 228 9 chr9 128153587 128153701 -14117743 - MIR SINE MIR -50 212 74 1970 101 0 11 chr9 128153776 128154052 -14117392 - AluSx SINE Alu -16 296 24 548 260 61 28 chr9 128154125 128154306 -14117138 - Charlie8 DNA MER1_type -2159 258 72 1250 112 5 5 chr9 128154310 128154498 -14116946 + AluSx SINE Alu 2 189 -123 1699 128 37 7 chr9 128154837 128155134 -14116310 + AluSg SINE Alu 1 306 -4 707 224 0 8 chr9 128155135 128155269 -14116175 + FLAM_A SINE Alu 1 133 0 2088 103 3 3 chr9 128155519 128155819 -14115625 + AluSx SINE Alu 1 300 -12 2009 130 0 0 chr9 128156043 128156344 -14115100 + AluSx SINE Alu 1 301 -11 2023 82 0 4 chr9 128157066 128157333 -14114111 - AluSc SINE Alu -6 303 38 2130 186 49 10 chr9 128157339 128157827 -14113617 - Charlie4a DNA MER1_type 0 508 2 206 220 0 34 chr9 128158638 128158697 -14112747 + (CCG)n Simple_repeat Simple_repeat 2 58 0 2453 37 3 0 chr9 128159104 128159400 -14112044 - AluY SINE Alu -14 297 1 1100 257 67 18 chr9 128159623 128159965 -14111479 - L3 LINE CR1 -13 1564 1206 1689 161 7 3 chr9 128160063 128160349 -14111095 + AluJb SINE Alu 5 291 -21 2467 59 0 0 chr9 128160546 128160852 -14110592 + AluY SINE Alu 1 306 -5 184 200 100 0 chr9 128161412 128161462 -14109982 - MIR SINE MIR -67 141 87 204 329 55 0 chr9 128161486 128161559 -14109885 + L2 LINE L2 3196 3272 0 230 343 86 9 chr9 128161626 128161731 -14109713 - MIR3 SINE MIR -93 115 3 636 207 159 0 chr9 128162035 128162180 -14109264 - FAM SINE Alu -7 168 1 901 140 42 0 chr9 128162193 128162364 -14109080 - AluSg/x SINE Alu 0 310 134 2185 86 3 20 chr9 128162364 128162537 -14108907 - AluSp SINE Alu -6 307 140 2071 97 17 0 chr9 128162537 128162827 -14108617 - AluSq SINE Alu -13 300 6 2185 86 3 20 chr9 128162827 128162955 -14108489 - AluSp SINE Alu -173 140 11 2186 136 0 51 chr9 128163139 128163492 -14107952 - MER1B DNA MER1_type 0 337 3 1556 184 0 26 chr9 128163680 128163984 -14107460 - AluJb SINE Alu -16 296 1 1241 170 0 33 chr9 128163984 128164225 -14107219 - AluJo SINE Alu -8 304 72 478 168 131 19 chr9 128164395 128164502 -14106942 + MER69 DNA AcHobo 15 133 -1093 858 206 0 29 chr9 128164522 128164692 -14106752 + FRAM SINE Alu 1 165 -1 1567 182 7 0 chr9 128164849 128165146 -14106298 - AluJo SINE Alu -13 299 1 2452 47 0 0 chr9 128165188 128165485 -14105959 + AluY SINE Alu 1 297 -14 2197 107 3 0 chr9 128165550 128165858 -14105586 + AluSx SINE Alu 1 309 -3 2000 134 0 6 chr9 128166185 128166499 -14104945 - AluSx SINE Alu 0 312 1 1495 98 0 10 chr9 128166556 128166761 -14104683 + AluSp SINE Alu 105 307 -6 1261 177 52 72 chr9 128166809 128167114 -14104330 - AluJo SINE Alu -3 299 1 2034 92 0 60 chr9 128167121 128167437 -14104007 - AluY SINE Alu -14 297 1 442 266 22 7 chr9 128167475 128167614 -14103830 + L1M4 LINE L1 4611 4751 -1395 183 80 0 0 chr9 128167636 128167661 -14103783 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1989 106 0 7 chr9 128167717 128167991 -14103453 + AluSx SINE Alu 22 293 -19 540 181 181 0 chr9 128168022 128168127 -14103317 + AluSc SINE Alu 166 289 -20 2018 113 31 0 chr9 128168127 128168418 -14103026 + AluSc SINE Alu 1 300 -9 1920 118 0 60 chr9 128168434 128168766 -14102678 + AluSx SINE Alu 1 312 0 1893 134 0 51 chr9 128168831 128169145 -14102299 + AluSx SINE Alu 1 298 -14 1918 139 10 0 chr9 128169266 128169569 -14101875 + AluSq SINE Alu 1 306 -7 252 0 0 0 chr9 128169606 128169634 -14101810 + (TG)n Simple_repeat Simple_repeat 2 29 0 1884 128 3 7 chr9 128169655 128169945 -14101499 - AluSx SINE Alu -23 289 1 1365 171 11 49 chr9 128169975 128170109 -14101335 + AluJb SINE Alu 1 122 -190 1551 173 46 3 chr9 128170109 128170392 -14101052 + AluJb SINE Alu 1 295 -17 1365 171 11 49 chr9 128170392 128170520 -14100924 + AluJb SINE Alu 122 253 -59 2109 96 7 0 chr9 128170541 128170854 -14100590 + AluSq SINE Alu 1 315 0 358 292 135 34 chr9 128170884 128171072 -14100372 + L3 LINE CR1 1259 1483 -94 2149 86 0 30 chr9 128171072 128171374 -14100070 - AluSx SINE Alu -11 301 9 358 292 135 34 chr9 128171374 128171452 -14099992 + L3 LINE CR1 1483 1552 -25 1177 166 42 25 chr9 128171750 128171991 -14099453 - AluJb SINE Alu -8 304 60 2014 136 0 7 chr9 128172026 128172335 -14099109 + AluSx SINE Alu 1 307 -5 1993 118 0 3 chr9 128172335 128172623 -14098821 + AluSg SINE Alu 1 288 -22 2377 93 0 0 chr9 128172624 128172936 -14098508 + AluSx SINE Alu 1 312 0 1022 152 12 0 chr9 128172938 128173109 -14098335 + AluSg/x SINE Alu 136 308 -4 301 306 0 31 chr9 128173422 128173520 -14097924 + L3 LINE CR1 1215 1309 -268 407 273 0 0 chr9 128173527 128173615 -14097829 + L2 LINE L2 3197 3284 -29 1777 157 3 0 chr9 128173623 128173916 -14097528 - AluJb SINE Alu -18 294 1 200 311 14 14 chr9 128173937 128174011 -14097433 + L3 LINE CR1 1277 1350 -227 201 203 94 62 chr9 128174095 128174159 -14097285 + L3 LINE CR1 1502 1567 -10 2408 61 3 0 chr9 128174191 128174486 -14096958 - AluY SINE Alu -15 296 1 743 214 0 0 chr9 128174605 128174736 -14096708 + FLAM_C SINE Alu 1 131 -12 1545 127 13 0 chr9 128174794 128175031 -14096413 - AluSx SINE Alu -13 299 60 2208 104 0 0 chr9 128175190 128175489 -14095955 - AluY SINE Alu -12 299 1 763 180 8 0 chr9 128175931 128176059 -14095385 - FLAM_C SINE Alu -10 133 5 1095 160 33 73 chr9 128176063 128176338 -14095106 - L1MC3 LINE L1 -10 7775 7512 1339 142 28 108 chr9 128176438 128176624 -14094820 - AluYb8 SINE Alu -19 299 148 2235 87 0 0 chr9 128176624 128176913 -14094531 + AluSc SINE Alu 12 300 -9 1339 142 28 108 chr9 128176913 128177051 -14094393 - AluYb8 SINE Alu -170 148 1 321 337 44 39 chr9 128177310 128177491 -14093953 - MIR SINE MIR -74 188 7 2123 99 3 0 chr9 128177631 128177973 -14093471 - AluSx SINE Alu 0 343 1 1379 194 3 23 chr9 128177978 128178277 -14093167 - AluJb SINE Alu -19 293 1 2105 109 0 10 chr9 128178487 128178790 -14092654 - AluSx SINE Alu -12 300 1 1944 122 20 7 chr9 128178795 128179091 -14092353 - AluSg SINE Alu -9 301 2 775 111 16 24 chr9 128179094 128179220 -14092224 - AluJo/FLAM SINE Alu -182 130 6 1753 146 58 41 chr9 128179247 128179589 -14091855 - MER7A DNA MER2_type 0 346 1 1056 221 4 39 chr9 128179670 128179901 -14091543 - MER58A DNA MER1_type 0 224 2 2248 92 0 13 chr9 128180059 128180376 -14091068 - AluSq SINE Alu 0 313 1 1655 186 3 0 chr9 128180422 128180723 -14090721 - AluJb SINE Alu -10 302 1 1557 162 3 95 chr9 128180744 128181059 -14090385 - AluJo SINE Alu -16 286 1 2187 103 0 0 chr9 128181419 128181710 -14089734 + AluSq SINE Alu 3 293 -20 1438 146 120 11 chr9 128181871 128182146 -14089298 + AluJb SINE Alu 1 305 -7 2025 135 3 0 chr9 128182351 128182655 -14088789 - AluSx SINE Alu -7 305 1 2271 88 0 0 chr9 128182728 128183025 -14088419 - AluSg SINE Alu -13 297 1 853 144 0 8 chr9 128183160 128183292 -14088152 - FLAM_C SINE Alu -2 131 1 748 289 205 25 chr9 128183300 128183695 -14087749 - L2 LINE L2 -3 3310 2845 383 221 32 11 chr9 128183706 128183801 -14087643 - MER94 DNA DNA -34 100 4 5641 231 218 49 chr9 128183803 128185341 -14086103 - L2 LINE L2 -462 2852 1575 1575 164 63 0 chr9 128185341 128185628 -14085816 + AluJb SINE Alu 1 305 -7 1554 190 35 7 chr9 128185628 128185917 -14085527 + AluJb SINE Alu 1 297 -5 5641 231 218 49 chr9 128185917 128186576 -14084868 - L2 LINE L2 -1739 1575 1029 1448 176 45 17 chr9 128186576 128186865 -14084579 + AluJb SINE Alu 2 298 -14 5641 231 218 49 chr9 128186865 128187017 -14084427 - L2 LINE L2 -2285 1029 904 2049 104 17 0 chr9 128187017 128187306 -14084138 - AluSx SINE Alu -18 294 1 5641 231 218 49 chr9 128187306 128187362 -14084082 - L2 LINE L2 -2410 904 37 359 215 183 0 chr9 128187966 128188059 -14083385 + L2 LINE L2 3199 3308 -5 1051 133 12 0 chr9 128188073 128188238 -14083206 - AluSq SINE Alu -17 296 130 351 214 77 83 chr9 128188251 128188419 -14083025 + L1MC5 LINE L1 7576 7742 -219 21 36 0 0 chr9 128188419 128188447 -14082997 + AT_rich Low_complexity Low_complexity 1 28 0 901 111 11 11 chr9 128188447 128188627 -14082817 + (TA)n Simple_repeat Simple_repeat 1 180 0 233 321 0 23 chr9 128188670 128188801 -14082643 - AluSp SINE Alu -83 220 93 1143 186 0 0 chr9 128188821 128189020 -14082424 - AluSq SINE Alu -114 199 1 2154 101 3 3 chr9 128189028 128189325 -14082119 - AluSg SINE Alu -13 297 1 332 230 239 52 chr9 128189638 128189851 -14081593 + MIR SINE MIR 4 256 -6 2247 119 3 0 chr9 128190109 128190411 -14081033 - AluSx SINE Alu -9 303 1 1208 137 0 0 chr9 128190846 128191021 -14080423 - AluSg/x SINE Alu 0 309 135 2241 117 7 0 chr9 128191038 128191346 -14080098 - AluSx SINE Alu -2 310 1 2167 124 13 0 chr9 128191346 128191653 -14079791 - AluSx SINE Alu -1 311 1 1152 260 119 42 chr9 128191872 128192435 -14079009 - L2 LINE L2 0 3313 2663 2266 106 0 0 chr9 128192435 128192739 -14078705 - AluSx SINE Alu 0 304 1 1152 260 119 42 chr9 128192739 128192974 -14078470 - L2 LINE L2 -650 2663 2448 385 254 69 0 chr9 128192995 128193125 -14078319 + L1ME4a LINE L1 5979 6117 -4 2185 112 3 7 chr9 128193175 128193480 -14077964 - AluSc SINE Alu -4 305 2 2379 75 3 44 chr9 128193545 128193866 -14077578 - AluSp SINE Alu -5 308 1 24 22 0 43 chr9 128193869 128193892 -14077552 + AT_rich Low_complexity Low_complexity 1 23 -21 942 138 0 0 chr9 128193892 128194022 -14077422 - FLAM_A SINE Alu -2 131 2 24 22 0 43 chr9 128194022 128194044 -14077400 + AT_rich Low_complexity Low_complexity 23 44 0 2231 78 10 39 chr9 128194248 128194555 -14076889 + AluSc SINE Alu 1 298 -11 2165 98 78 29 chr9 128194889 128195236 -14076208 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr9 128195933 128195954 -14075490 + AT_rich Low_complexity Low_complexity 1 21 0 1661 192 31 0 chr9 128195961 128196248 -14075196 - AluJo SINE Alu -12 300 5 2247 112 0 0 chr9 128196707 128197001 -14074443 + AluSx SINE Alu 15 308 -4 2101 114 10 13 chr9 128197011 128197309 -14074135 + AluSx SINE Alu 3 299 -13 2176 78 0 4 chr9 128197327 128197622 -14073822 + AluSx SINE Alu 16 309 0 680 206 0 57 chr9 128197876 128198017 -14073427 - FLAM_A SINE Alu 0 133 1 2377 69 0 3 chr9 128198029 128198318 -14073126 - AluSc SINE Alu -21 288 1 589 181 81 12 chr9 128198369 128198529 -14072915 - Charlie1 DNA MER1_type 0 2761 2591 1143 139 0 0 chr9 128198534 128198692 -14072752 + AluSp SINE Alu 137 294 -19 1706 168 62 65 chr9 128198694 128199071 -14072373 - Charlie1 DNA MER1_type -163 2598 2221 2050 156 0 0 chr9 128199071 128199378 -14072066 - AluSx SINE Alu -5 307 1 1706 168 62 65 chr9 128199378 128199434 -14072010 - Charlie1 DNA MER1_type -540 2221 2166 2049 190 19 30 chr9 128199464 128199805 -14071639 - Charlie1 DNA MER1_type -686 2075 1738 1833 134 72 7 chr9 128199805 128200096 -14071348 - AluSx SINE Alu -2 310 1 2049 190 19 30 chr9 128200096 128200181 -14071263 - Charlie1 DNA MER1_type -1023 1738 1654 1064 177 0 35 chr9 128200182 128200380 -14071064 - AluJo SINE Alu -13 299 109 1990 134 14 0 chr9 128200380 128200671 -14070773 + AluSx SINE Alu 1 295 -17 24 32 0 0 chr9 128200737 128200768 -14070676 + AT_rich Low_complexity Low_complexity 1 31 0 1696 101 0 0 chr9 128201103 128201322 -14070122 + AluSg/x SINE Alu 83 301 -9 21 0 0 0 chr9 128201501 128201522 -14069922 + AT_rich Low_complexity Low_complexity 1 21 0 2367 79 3 20 chr9 128201534 128201838 -14069606 + AluSp SINE Alu 1 299 -14 1948 112 63 0 chr9 128202420 128202705 -14068739 - AluSx SINE Alu -9 303 1 2242 103 0 0 chr9 128202902 128203194 -14068250 - AluSg SINE Alu -18 292 1 207 114 0 0 chr9 128204349 128204384 -14067060 + (T)n Simple_repeat Simple_repeat 1 35 0 23 54 0 0 chr9 128204799 128204836 -14066608 + AT_rich Low_complexity Low_complexity 1 37 0 218 71 0 48 chr9 128204842 128204884 -14066560 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 1988 104 0 0 chr9 128204931 128205190 -14066254 - AluSx SINE Alu -53 259 1 2398 84 7 0 chr9 128205336 128205634 -14065810 - AluSp SINE Alu -13 300 1 647 236 26 51 chr9 128205634 128205829 -14065615 - MIR SINE MIR -54 208 19 28 38 0 19 chr9 128205931 128205965 -14065479 + AT_rich Low_complexity Low_complexity 1 35 -17 2120 113 32 0 chr9 128205965 128206248 -14065196 - AluSq SINE Alu -21 292 1 28 38 0 19 chr9 128206248 128206266 -14065178 + AT_rich Low_complexity Low_complexity 35 52 0 1831 161 0 23 chr9 128206340 128206645 -14064799 + AluJb SINE Alu 2 299 -13 1898 143 11 0 chr9 128207298 128207577 -14063867 + AluJb SINE Alu 17 298 -14 1622 184 7 23 chr9 128207634 128207938 -14063506 - AluJo SINE Alu -13 299 1 23 0 0 0 chr9 128208035 128208058 -14063386 + AT_rich Low_complexity Low_complexity 1 23 0 316 193 0 0 chr9 128208058 128208115 -14063329 - L2 LINE L2 -14 3258 3202 254 182 0 55 chr9 128208464 128208519 -14062925 + L2 LINE L2 3262 3313 0 1794 147 61 4 chr9 128208558 128208837 -14062607 - AluJb SINE Alu -14 298 4 2262 109 0 0 chr9 128209111 128209414 -14062030 + AluSx SINE Alu 1 303 -9 1943 179 0 0 chr9 128209425 128209727 -14061717 + AluJb SINE Alu 1 302 -10 2095 129 10 0 chr9 128209802 128210097 -14061347 + AluSx SINE Alu 1 298 -14 2130 106 13 13 chr9 128210160 128210471 -14060973 + AluSx SINE Alu 1 311 -1 1958 149 0 3 chr9 128210634 128210930 -14060514 - AluY SINE Alu -16 295 1 288 172 0 31 chr9 128211488 128211552 -14059892 + AluSc SINE Alu 238 299 0 260 265 20 41 chr9 128211552 128211650 -14059794 - MIR SINE MIR -89 173 78 213 266 52 121 chr9 128211843 128211919 -14059525 - L2 LINE L2 -213 3059 2979 1615 194 17 23 chr9 128211919 128212218 -14059226 + AluJo SINE Alu 1 297 -15 213 266 52 121 chr9 128212218 128212389 -14059055 - L2 LINE L2 -293 2979 2829 1936 138 3 7 chr9 128212440 128212742 -14058702 - AluSx SINE Alu 0 301 1 375 82 0 0 chr9 128212752 128212801 -14058643 - AluY SINE Alu -5 296 248 1654 58 0 0 chr9 128212801 128212989 -14058455 - AluY SINE Alu -123 188 1 2242 117 3 0 chr9 128212989 128213289 -14058155 - AluSx SINE Alu -11 301 1 2212 102 0 0 chr9 128214173 128214492 -14056952 - AluSp SINE Alu 0 319 1 1921 148 7 10 chr9 128214498 128214801 -14056643 - AluSx SINE Alu -10 302 1 2237 108 3 10 chr9 128214801 128215107 -14056337 - AluSg SINE Alu -5 305 1 1420 180 31 30 chr9 128215120 128215445 -14055999 + L1ME3 LINE L1 5853 6334 0 1892 152 7 3 chr9 128215703 128215993 -14055451 - AluJb SINE Alu -17 295 5 2032 151 3 3 chr9 128216066 128216378 -14055066 - AluSq SINE Alu -1 312 1 2098 114 20 0 chr9 128217650 128217947 -14053497 - AluSx SINE Alu -9 303 1 1080 55 7 41 chr9 128218148 128218293 -14053151 - AluY SINE Alu -171 140 1 820 117 0 0 chr9 128218293 128218404 -14053040 + AluSg/x SINE Alu 186 296 -14 2068 114 44 7 chr9 128218507 128218805 -14052639 - AluSc SINE Alu 0 309 1 2541 65 0 3 chr9 128218813 128219119 -14052325 - AluY SINE Alu -4 307 3 645 300 56 69 chr9 128219146 128219593 -14051851 - L2 LINE L2 0 3272 2832 2303 89 3 3 chr9 128219593 128219885 -14051559 + AluSx SINE Alu 1 292 -20 2090 125 0 10 chr9 128219889 128220185 -14051259 + AluSg SINE Alu 6 298 -12 510 301 26 10 chr9 128220195 128220388 -14051056 - L2 LINE L2 -569 2745 2550 2145 119 0 3 chr9 128220408 128220702 -14050742 + AluSg SINE Alu 1 293 -17 1259 122 0 6 chr9 128220702 128220882 -14050562 + AluSp SINE Alu 134 312 -1 2116 134 3 10 chr9 128221093 128221399 -14050045 - AluSx SINE Alu -8 304 1 203 304 63 51 chr9 128221888 128221982 -14049462 - MIR SINE MIR -81 181 86 540 264 91 54 chr9 128221982 128222134 -14049310 + MIR SINE MIR 4 170 -92 2515 70 3 0 chr9 128222134 128222435 -14049009 - AluSp SINE Alu -11 302 1 540 264 91 54 chr9 128222435 128222524 -14048920 + MIR SINE MIR 170 254 -8 1866 138 43 0 chr9 128222732 128223014 -14048430 - AluSx SINE Alu -18 294 1 257 230 16 111 chr9 128223425 128223454 -14047990 - MIR SINE MIR -71 191 161 2224 97 17 0 chr9 128223454 128223752 -14047692 + AluSc SINE Alu 1 303 -6 257 230 16 111 chr9 128223752 128223848 -14047596 - MIR SINE MIR -101 161 78 213 266 52 121 chr9 128224041 128224117 -14047327 - L2 LINE L2 -213 3059 2979 1615 194 17 23 chr9 128224117 128224416 -14047028 + AluJo SINE Alu 1 297 -15 213 266 52 121 chr9 128224416 128224587 -14046857 - L2 LINE L2 -293 2979 2829 2049 121 3 7 chr9 128224638 128224940 -14046504 - AluSx SINE Alu 0 301 1 387 41 0 0 chr9 128224950 128224999 -14046445 - AluY SINE Alu -5 296 248 1624 53 0 5 chr9 128224999 128225188 -14046256 - AluY SINE Alu -123 188 1 2292 113 3 0 chr9 128225188 128225490 -14045954 - AluSx SINE Alu -9 303 1 2212 102 0 0 chr9 128226374 128226693 -14044751 - AluSp SINE Alu 0 319 1 1892 152 7 10 chr9 128226699 128227002 -14044442 - AluSx SINE Alu -10 302 1 1840 130 20 7 chr9 128227002 128227301 -14044143 - AluSc SINE Alu -5 304 1 2054 120 0 30 chr9 128227335 128227636 -14043808 + AluSx SINE Alu 4 295 -17 500 301 87 24 chr9 128227657 128227863 -14043581 + MIR SINE MIR 44 262 0 1956 120 13 36 chr9 128230346 128230647 -14040797 - AluSx SINE Alu -18 294 1 2218 101 0 0 chr9 128232135 128232421 -14039023 - AluSx SINE Alu -21 291 6 1596 115 165 11 chr9 128232554 128232815 -14038629 - AluSx SINE Alu -11 301 1 388 233 47 12 chr9 128234165 128234251 -14037193 - AluJo SINE Alu -90 212 124 1751 89 67 52 chr9 128234767 128235036 -14036408 + AluSc SINE Alu 24 296 -13 219 69 0 0 chr9 128235535 128235564 -14035880 + (TA)n Simple_repeat Simple_repeat 2 30 0 314 289 0 11 chr9 128235569 128235659 -14035785 - L1MC4 LINE L1 -1340 6702 6614 * 324 240 0 52 chr9 128235585 128235681 -14035763 + L1MC4 LINE L1 6613 6703 -1339 2261 102 7 0 chr9 128235686 128235981 -14035463 - AluSp SINE Alu -16 297 1 2538 64 0 13 chr9 128236602 128236914 -14034530 + AluY SINE Alu 1 308 -3 2417 66 3 10 chr9 128237137 128237440 -14034004 - AluSc SINE Alu 0 309 9 192 40 0 0 chr9 128237973 128237998 -14033446 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 261 0 0 0 chr9 128237997 128238026 -14033418 + (TG)n Simple_repeat Simple_repeat 2 30 0 2618 55 3 0 chr9 128238045 128238353 -14033091 + AluSp SINE Alu 1 309 -4 35 41 0 0 chr9 128238424 128238473 -14032971 + AT_rich Low_complexity Low_complexity 1 49 0 803 87 0 0 chr9 128238473 128238577 -14032867 - U6 snRNA snRNA -3 104 1 1695 171 16 19 chr9 128238602 128238911 -14032533 - AluJo SINE Alu -4 308 1 2325 84 7 0 chr9 128239922 128240219 -14031225 - AluSg1 SINE Alu -10 299 1 1491 175 51 4 chr9 128240229 128240503 -14030941 - AluJo SINE Alu -25 287 1 21 36 0 0 chr9 128240557 128240585 -14030859 + AT_rich Low_complexity Low_complexity 1 28 0 1020 123 6 56 chr9 128240698 128240877 -14030567 - AluSg/x SINE Alu -6 304 135 1666 183 42 0 chr9 128241058 128241343 -14030101 - AluJb SINE Alu -15 297 1 925 131 0 62 chr9 128241389 128241534 -14029910 + AluJb SINE Alu 1 136 -176 1937 133 17 23 chr9 128241534 128241836 -14029608 + AluSq SINE Alu 1 300 -13 1208 130 0 0 chr9 128242748 128242909 -14028535 + AluJb SINE Alu 136 296 -16 22 35 0 0 chr9 128242939 128242968 -14028476 + AT_rich Low_complexity Low_complexity 1 29 0 268 281 22 11 chr9 128243174 128243263 -14028181 - MIR SINE MIR -10 252 163 216 285 44 80 chr9 128243435 128243572 -14027872 - L2 LINE L2 -196 3076 2945 2408 100 0 0 chr9 128243869 128244180 -14027264 - AluSq SINE Alu 0 313 3 2381 90 7 0 chr9 128245073 128245383 -14026061 - AluSp SINE Alu -1 312 1 2026 112 63 3 chr9 128245383 128245668 -14025776 - AluSq SINE Alu -11 302 1 239 242 48 199 chr9 128245669 128245900 -14025544 - L1MCc LINE L1 -5377 1046 851 662 225 28 17 chr9 128246141 128246319 -14025125 - L1MCc LINE L1 -5968 455 276 1290 111 70 10 chr9 128246320 128246519 -14024925 - MSTD LTR MaLR 0 396 186 421 121 0 0 chr9 128246523 128246589 -14024855 - Alu SINE Alu -3 306 241 705 148 0 25 chr9 128246798 128246920 -14024524 - AluSq/x SINE Alu -192 120 2 1981 139 13 3 chr9 128247054 128247356 -14024088 + AluSx SINE Alu 3 307 -5 323 113 77 7 chr9 128247358 128247580 -14023864 + AluSx SINE Alu 3 302 0 887 149 39 26 chr9 128247839 128247993 -14023451 + FRAM SINE Alu 1 155 -21 34 0 0 0 chr9 128248039 128248073 -14023371 + AT_rich Low_complexity Low_complexity 1 34 0 1559 149 0 102 chr9 128248235 128248570 -14022874 + AluJb SINE Alu 2 302 0 2301 106 0 6 chr9 128248876 128249188 -14022256 - AluSq SINE Alu -3 310 1 1292 161 32 88 chr9 128249229 128249358 -14022086 + AluJo SINE Alu 18 124 -188 2080 116 39 0 chr9 128249358 128249643 -14021801 + AluSp SINE Alu 1 296 -17 1292 161 32 88 chr9 128249643 128249798 -14021646 + AluJo SINE Alu 124 286 -26 275 213 0 0 chr9 128249799 128249846 -14021598 - AluJ/FLAM SINE Alu -220 82 36 343 200 147 0 chr9 128249867 128249962 -14021482 + L1MC4 LINE L1 7927 8035 -7 2041 122 20 7 chr9 128250013 128250317 -14021127 + AluSg SINE Alu 2 309 -1 2419 57 0 0 chr9 128250454 128250733 -14020711 + AluY SINE Alu 1 279 -32 278 26 26 0 chr9 128250733 128250772 -14020672 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 1239 114 0 0 chr9 128250772 128250939 -14020505 + AluSp SINE Alu 133 299 -14 301 246 138 15 chr9 128250997 128251127 -14020317 - L1MC/D LINE L1 -541 5621 5477 629 163 22 52 chr9 128251147 128251282 -14020162 - FLAM_C SINE Alu -2 131 1 2007 122 3 7 chr9 128251356 128251660 -14019784 + AluSg SINE Alu 1 303 -7 701 224 0 8 chr9 128251664 128251798 -14019646 + FLAM_A SINE Alu 1 133 0 2210 103 3 3 chr9 128252048 128252348 -14019096 + AluSx SINE Alu 1 300 -12 2036 128 0 0 chr9 128252572 128252873 -14018571 + AluSx SINE Alu 1 301 0 2134 82 0 4 chr9 128253595 128253862 -14017582 - AluSc SINE Alu -6 303 38 2159 186 49 10 chr9 128253868 128254356 -14017088 - Charlie4a DNA MER1_type 0 508 2 206 220 0 34 chr9 128255167 128255226 -14016218 + (CCG)n Simple_repeat Simple_repeat 2 58 0 2586 37 3 0 chr9 128255633 128255929 -14015515 - AluY SINE Alu -14 297 1 951 257 67 18 chr9 128256152 128256494 -14014950 - L3 LINE CR1 -13 1564 1206 1624 179 11 3 chr9 128256592 128256877 -14014567 + AluJb SINE Alu 5 291 -21 2443 65 0 3 chr9 128257079 128257370 -14014074 + AluSc SINE Alu 6 295 -14 363 305 20 74 chr9 128258040 128258104 -14013340 - MIR SINE MIR -34 228 162 2065 91 14 18 chr9 128258104 128258389 -14013055 + AluSc SINE Alu 24 307 -2 363 305 20 74 chr9 128258389 128258527 -14012917 - MIR SINE MIR -100 162 37 2132 114 7 3 chr9 128258587 128258884 -14012560 + AluSx SINE Alu 6 303 -9 21 0 0 0 chr9 128259063 128259084 -14012360 + AT_rich Low_complexity Low_complexity 1 21 0 2367 79 3 20 chr9 128259096 128259400 -14012044 + AluSp SINE Alu 1 299 -14 2022 121 3 3 chr9 128259982 128260272 -14011172 - AluSx SINE Alu -9 303 14 213 94 0 0 chr9 128260559 128260591 -14010853 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 22 35 0 0 chr9 128260687 128260716 -14010728 + AT_rich Low_complexity Low_complexity 1 29 0 1754 175 79 12 chr9 128260912 128261094 -14010350 - MLT1A1 LTR MaLR 0 365 197 2238 103 3 0 chr9 128261094 128261385 -14010059 - AluSp SINE Alu -21 292 1 1754 175 79 12 chr9 128261385 128261544 -14009900 - MLT1A1 LTR MaLR -168 197 1 2539 87 0 0 chr9 128261557 128261868 -14009576 - AluY SINE Alu 0 311 1 2044 138 7 0 chr9 128261869 128262166 -14009278 - AluSx SINE Alu -13 299 1 2220 118 6 10 chr9 128262639 128262919 -14008525 + AluSq SINE Alu 1 281 -32 225 0 0 0 chr9 128262919 128262944 -14008500 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2220 118 6 10 chr9 128262944 128262976 -14008468 + AluSq SINE Alu 281 312 -1 454 132 0 77 chr9 128263234 128263325 -14008119 - L1PA11 LINE L1 -2 6172 6089 3834 86 0 100 chr9 128263328 128263966 -14007478 - L1PA10 LINE L1 -128 6040 5467 1791 161 39 84 chr9 128263963 128264074 -14007370 + L1M4 LINE L1 1025 1139 -5403 * 2305 107 0 0 chr9 128264074 128264372 -14007072 + AluSg SINE Alu 1 298 -12 2327 110 10 0 chr9 128264382 128264692 -14006752 + AluSp SINE Alu 1 313 0 1791 161 39 84 chr9 128264692 128265034 -14006410 + L1M4 LINE L1 1148 1468 -5074 1640 126 0 9 chr9 128265092 128265323 -14006121 - AluSx SINE Alu -83 229 1 910 157 8 0 chr9 128265671 128265805 -14005639 + AluJo SINE Alu 1 135 -177 1648 158 7 62 chr9 128265806 128265930 -14005514 + AluJo SINE Alu 3 132 -180 2184 125 0 0 chr9 128265930 128266239 -14005205 + AluSx SINE Alu 1 309 0 1648 158 7 62 chr9 128266239 128266416 -14005028 + AluJo SINE Alu 132 289 -23 22 0 0 0 chr9 128266416 128266438 -14005006 + AT_rich Low_complexity Low_complexity 1 22 0 1070 126 40 0 chr9 128266448 128266599 -14004845 - AluSg/x SINE Alu -19 293 137 2089 118 24 10 chr9 128266638 128266934 -14004510 - AluSx SINE Alu -12 300 1 582 128 160 0 chr9 128267052 128267177 -14004267 - L1MA8 LINE L1 0 6291 6147 203 333 0 0 chr9 128267233 128267305 -14004139 + MIR SINE MIR 35 106 -102 33 80 0 0 chr9 128267583 128267658 -14003786 + AT_rich Low_complexity Low_complexity 1 75 0 2339 89 0 3 chr9 128267660 128267962 -14003482 - AluY SINE Alu -10 301 1 509 313 39 22 chr9 128268011 128268190 -14003254 - MIR SINE MIR -50 212 31 2545 48 3 0 chr9 128269108 128269400 -14002044 - AluY SINE Alu -18 293 1 302 286 53 26 chr9 128269612 128269801 -14001643 - L1ME4a LINE L1 -214 5907 5714 2164 117 10 3 chr9 128269807 128270115 -14001329 + AluSx SINE Alu 1 310 -2 1224 127 6 0 chr9 128270154 128270319 -14001125 - AluSp SINE Alu -24 289 124 285 51 0 0 chr9 128270319 128270358 -14001086 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2324 82 0 0 chr9 128270358 128270640 -14000804 - AluY SINE Alu -28 283 2 303 200 57 0 chr9 128270646 128270716 -14000728 - L1ME4a LINE L1 -451 5670 5597 24 91 0 0 chr9 128271144 128271210 -14000234 + AT_rich Low_complexity Low_complexity 1 66 0 2274 82 7 0 chr9 128271346 128271638 -13999806 + AluSp SINE Alu 2 295 -18 2206 126 0 0 chr9 128271979 128272272 -13999172 + AluSx SINE Alu 1 293 -19 2515 60 7 3 chr9 128272276 128272577 -13998867 + AluY SINE Alu 1 302 -9 199 261 31 31 chr9 128272608 128272673 -13998771 + MER5B DNA MER1_type 13 77 -101 1322 203 30 0 chr9 128272827 128273059 -13998385 + Tigger7 DNA MER2_type 2 240 -493 316 238 0 0 chr9 128273070 128273133 -13998311 + Tigger7 DNA MER2_type 2488 2550 -37 926 48 0 0 chr9 128273273 128273378 -13998066 + AluSp SINE Alu 1 105 -208 463 171 0 34 chr9 128274142 128274230 -13997214 - AluJo SINE Alu -178 134 50 283 245 53 21 chr9 128274250 128274344 -13997100 - L1ME1 LINE L1 -5 6161 6065 761 122 0 82 chr9 128274383 128274530 -13996914 - L1PA16 LINE L1 0 6166 6032 2353 97 0 10 chr9 128274530 128274841 -13996603 - AluSx SINE Alu -4 308 1 496 216 83 64 chr9 128274849 128275053 -13996391 - L1MC5 LINE L1 -48 7913 7706 6138 31 14 11 chr9 128275230 128276148 -13995296 - SVA Other Other -1096 1386 57 234 0 0 0 chr9 128276148 128276174 -13995270 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 1795 129 33 60 chr9 128276714 128277016 -13994428 - AluSq SINE Alu -19 294 1 2055 134 7 7 chr9 128277352 128277651 -13993793 - AluSx SINE Alu -13 299 1 2257 112 0 0 chr9 128278239 128278534 -13992910 - AluSx SINE Alu -17 295 1 606 276 69 54 chr9 128279711 128280113 -13991331 + L1ME4a LINE L1 5512 5907 -214 2117 87 3 33 chr9 128280113 128280412 -13991032 - AluSg SINE Alu -20 290 1 606 276 69 54 chr9 128280412 128280511 -13990933 + L1ME4a LINE L1 5907 6024 -97 2528 78 3 0 chr9 128280511 128280818 -13990626 - AluSp SINE Alu -4 309 2 606 276 69 54 chr9 128280818 128280854 -13990590 + L1ME4a LINE L1 6024 6058 -63 1138 145 61 37 chr9 128280861 128281075 -13990369 - MER20 DNA MER1_type 0 219 1 1826 200 76 69 chr9 128281083 128281649 -13989795 + Charlie1a DNA MER1_type 1 570 -885 1114 135 0 39 chr9 128281650 128281828 -13989616 + AluJb SINE Alu 1 171 -141 854 202 21 26 chr9 128281839 128282032 -13989412 + Charlie1a DNA MER1_type 556 747 -708 * 1823 144 53 9 chr9 128282027 128282368 -13989076 + Charlie1a DNA MER1_type 895 1250 -205 24 32 0 0 chr9 128282395 128282426 -13989018 + AT_rich Low_complexity Low_complexity 1 31 0 2390 82 0 3 chr9 128282428 128282722 -13988722 + AluSc SINE Alu 1 293 -16 300 258 30 0 chr9 128282723 128282789 -13988655 - MER57A LTR ERV1 -70 333 266 * 652 129 152 29 chr9 128282761 128282903 -13988541 + Charlie1a DNA MER1_type 1264 1432 -1329 1967 127 38 10 chr9 128282903 128283194 -13988250 + AluJo SINE Alu 1 299 -13 652 129 152 29 chr9 128283194 128283222 -13988222 + Charlie1a DNA MER1_type 1432 1455 0 204 67 0 0 chr9 128283323 128283353 -13988091 + (A)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chr9 128283517 128283544 -13987900 + AT_rich Low_complexity Low_complexity 1 27 0 841 161 0 7 chr9 128283544 128283681 -13987763 - AluJo SINE Alu -176 136 1 2105 109 3 10 chr9 128284914 128285208 -13986236 - AluSc SINE Alu -17 292 1 3282 243 179 11 chr9 128285283 128285963 -13985481 - L1MC4 LINE L1 -154 7888 7323 261 0 0 0 chr9 128285963 128285992 -13985452 + (TG)n Simple_repeat Simple_repeat 2 30 0 1550 174 6 52 chr9 128285999 128286326 -13985118 - AluJb SINE Alu 0 312 1 3282 243 179 11 chr9 128286326 128286870 -13984574 - L1MC4 LINE L1 -723 7319 6449 2356 101 0 0 chr9 128287048 128287354 -13984090 - AluSx SINE Alu -6 306 1 489 300 58 47 chr9 128287380 128287637 -13983807 + MIR SINE MIR 3 262 0 245 319 62 9 chr9 128287687 128287800 -13983644 - L2 LINE L2 0 3272 3154 1410 138 4 30 chr9 128287916 128288147 -13983297 + AluJb SINE Alu 87 311 -1 1529 105 17 50 chr9 128290109 128290347 -13981097 - MER30 DNA MER1_type 0 230 1 21 57 0 0 chr9 128290416 128290451 -13980993 + AT_rich Low_complexity Low_complexity 1 35 0 251 322 102 17 chr9 128290689 128290807 -13980637 - L2 LINE L2 -4 3268 3141 229 277 71 9 chr9 128291406 128291518 -13979926 - L1ME LINE L1 -296 5825 5707 767 216 25 25 chr9 128291694 128291856 -13979588 + FRAM SINE Alu 2 163 -3 1035 167 4 134 chr9 128292020 128292202 -13979242 + MER8 DNA MER2_type 1 137 -102 2278 125 3 0 chr9 128292202 128292513 -13978931 - AluSx SINE Alu 0 312 1 1035 167 4 134 chr9 128292513 128292605 -13978839 + MER8 DNA MER2_type 137 239 0 664 272 12 0 chr9 128292674 128292843 -13978601 + MIR SINE MIR 92 262 0 195 259 0 0 chr9 128292874 128292932 -13978512 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 1850 129 30 59 chr9 128293539 128293842 -13977602 - AluSq SINE Alu -19 294 1 2096 141 7 0 chr9 128294178 128294477 -13976967 - AluSx SINE Alu -11 301 1 2294 112 0 0 chr9 128295065 128295361 -13976083 - AluSx SINE Alu -16 296 1 619 303 42 21 chr9 128296539 128296876 -13974568 + L1ME4a LINE L1 5512 5855 -266 2091 102 3 33 chr9 128296936 128297240 -13974204 - AluSg SINE Alu -15 295 1 2727 236 90 53 chr9 128297242 128297348 -13974096 - L1M4 LINE L1 -5402 1140 1039 4564 50 36 87 chr9 128297348 128298073 -13973371 + L1PA7 LINE L1 5467 6154 0 2727 236 90 53 chr9 128298073 128299035 -13972409 - L1M4 LINE L1 -5503 1039 33 2603 46 0 10 chr9 128299191 128299495 -13971949 + AluY SINE Alu 1 301 -10 192 261 31 31 chr9 128299526 128299591 -13971853 + MER5B DNA MER1_type 13 77 -101 1251 203 30 0 chr9 128299745 128299977 -13971467 + Tigger7 DNA MER2_type 2 240 -493 310 238 0 0 chr9 128299988 128300051 -13971393 + Tigger7 DNA MER2_type 2392 2454 -37 932 48 0 0 chr9 128300191 128300296 -13971148 + AluSp SINE Alu 1 105 -208 438 171 0 34 chr9 128301060 128301148 -13970296 - AluJo SINE Alu -178 134 50 265 245 53 21 chr9 128301168 128301262 -13970182 - L1ME1 LINE L1 -5 6161 6065 714 122 0 82 chr9 128301301 128301448 -13969996 - L1PA16 LINE L1 0 6166 6032 2339 109 0 3 chr9 128301448 128301759 -13969685 - AluSx SINE Alu -2 310 1 472 250 69 49 chr9 128301767 128301971 -13969473 - L1MC5 LINE L1 -48 7913 7706 6214 31 14 13 chr9 128302148 128303068 -13968376 - SVA Other Other -1096 1386 57 234 0 0 0 chr9 128303068 128303094 -13968350 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 2073 138 6 6 chr9 128303715 128304027 -13967417 + AluSx SINE Alu 1 312 0 1155 187 24 79 chr9 128304073 128304416 -13967028 - L1MB3 LINE L1 -28 6155 5839 243 279 101 23 chr9 128305359 128305488 -13965956 + L1MC4 LINE L1 7766 7904 -138 360 261 159 54 chr9 128305492 128305768 -13965676 + L1MC5 LINE L1 7627 7931 -30 2284 96 3 3 chr9 128305895 128306188 -13965256 - AluSx SINE Alu -18 294 2 338 327 45 0 chr9 128306197 128306307 -13965137 + L1ME4a LINE L1 5831 5945 -176 239 194 69 42 chr9 128306728 128306800 -13964644 + MLT1K LTR MaLR 513 586 -2 592 280 190 29 chr9 128306908 128307351 -13964093 + LTR33A LTR ERVL 10 523 0 222 299 0 15 chr9 128307405 128307472 -13963972 - MIR SINE MIR -62 146 81 261 0 0 0 chr9 128307524 128307553 -13963891 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1682 153 31 4 chr9 128307559 128307820 -13963624 - AluJo SINE Alu -32 280 13 243 275 21 63 chr9 128308040 128308182 -13963262 + MIR3 SINE MIR 49 184 -24 357 306 73 8 chr9 128308560 128308684 -13962760 + MIR SINE MIR 13 144 -118 669 149 0 25 chr9 128308691 128308812 -13962632 + FLAM_C SINE Alu 2 119 -24 505 0 31 0 chr9 128308812 128308877 -13962567 + (TAAAA)n Simple_repeat Simple_repeat 4 70 0 2180 117 10 7 chr9 128309825 128310125 -13961319 - AluSx SINE Alu -11 301 1 674 231 29 29 chr9 128310533 128310630 -13960814 + MER91B DNA MER1_type 2 101 -89 2570 68 3 0 chr9 128310630 128310940 -13960504 - AluY SINE Alu 0 311 1 674 231 29 29 chr9 128310940 128311015 -13960429 + MER91B DNA MER1_type 100 174 -16 1987 139 0 49 chr9 128311381 128311558 -13959886 - AluSx SINE Alu -4 308 153 2324 117 0 0 chr9 128311558 128311857 -13959587 - AluSq SINE Alu -14 299 1 1987 139 0 49 chr9 128311857 128312003 -13959441 - AluSx SINE Alu -159 153 1 302 260 14 0 chr9 128312009 128312082 -13959362 - MIR SINE MIR -61 147 74 318 264 55 60 chr9 128312877 128313059 -13958385 + L2 LINE L2 2696 2876 -438 414 209 108 16 chr9 128313148 128313277 -13958167 - MIR SINE MIR -117 145 5 366 255 85 81 chr9 128313282 128313529 -13957915 + L2 LINE L2 2904 3151 -121 417 201 121 46 chr9 128313948 128314084 -13957360 + MIR SINE MIR 11 155 -97 1181 204 145 0 chr9 128314084 128314388 -13957056 + MER7A DNA MER2_type 1 346 0 417 201 121 46 chr9 128314388 128314430 -13957014 + MIR SINE MIR 155 192 -60 2576 71 3 0 chr9 128316003 128316312 -13955132 - AluSx SINE Alu 0 312 3 742 80 53 7 chr9 128316746 128317046 -13954398 + (CA)n Simple_repeat Simple_repeat 1 314 0 725 75 75 0 chr9 128317089 128317363 -13954081 + (CA)n Simple_repeat Simple_repeat 1 294 0 300 196 114 43 chr9 128317438 128317554 -13953890 + MLT1K LTR MaLR 153 265 -341 198 236 69 28 chr9 128317767 128317839 -13953605 + MIR SINE MIR 108 182 -80 206 279 63 25 chr9 128318694 128318773 -13952671 + MIR SINE MIR 108 189 -73 340 306 125 19 chr9 128318776 128318936 -13952508 + MIR SINE MIR 53 229 -33 2184 94 16 29 chr9 128319524 128319868 -13951576 + AluSq SINE Alu 1 313 0 201 261 0 46 chr9 128320142 128320207 -13951237 - L2 LINE L2 -1 3312 3251 2261 107 0 3 chr9 128320397 128320688 -13950756 - AluSg SINE Alu -20 290 1 779 173 0 0 chr9 128320846 128320979 -13950465 - FLAM_A SINE Alu 0 133 1 291 242 260 38 chr9 128320979 128321318 -13950126 - L2 LINE L2 -529 2785 2372 513 222 41 86 chr9 128321765 128321885 -13949559 + MIR SINE MIR 6 114 -148 2277 102 0 3 chr9 128321885 128322179 -13949265 - AluSx SINE Alu -10 302 10 513 222 41 86 chr9 128322179 128322258 -13949186 + MIR SINE MIR 114 195 -67 812 159 53 0 chr9 128322263 128322395 -13949049 + AluJb SINE Alu 1 139 -173 27 73 0 0 chr9 128322401 128322456 -13948988 + AT_rich Low_complexity Low_complexity 1 55 0 226 227 0 0 chr9 128322565 128322609 -13948835 + L2 LINE L2 2926 2969 -303 290 85 0 21 chr9 128323799 128323846 -13947598 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 2041 129 10 33 chr9 128324018 128324320 -13947124 - AluJb SINE Alu -17 295 1 1676 149 22 0 chr9 128324650 128324918 -13946526 + AluJo SINE Alu 6 279 -33 525 230 40 0 chr9 128325084 128325210 -13946234 - LTR16C LTR ERVL -14 477 347 1983 97 10 45 chr9 128325347 128325481 -13945963 + AluSx SINE Alu 2 139 -173 2371 101 10 0 chr9 128325481 128325789 -13945655 + AluSq SINE Alu 1 311 -2 1983 97 10 45 chr9 128325789 128325942 -13945502 + AluSx SINE Alu 139 279 -33 437 301 21 28 chr9 128326016 128326159 -13945285 - MIR SINE MIR -120 142 1 331 219 0 24 chr9 128327646 128327728 -13943716 + MIR SINE MIR 65 144 -118 358 188 0 16 chr9 128328032 128328096 -13943348 - MER81 DNA DNA -51 63 1 232 100 25 0 chr9 128328125 128328165 -13943279 + MER81 DNA DNA 73 113 -1 286 303 11 0 chr9 128328708 128328797 -13942647 + MIR SINE MIR 102 191 -71 275 232 14 0 chr9 128329727 128329796 -13941648 + (CA)n Simple_repeat Simple_repeat 2 71 0 1904 141 0 46 chr9 128329831 128330160 -13941284 - AluJo SINE Alu 0 315 1 2056 81 0 0 chr9 128330677 128330924 -13940520 - AluSq SINE Alu -66 247 1 239 192 0 0 chr9 128331227 128331279 -13940165 - MLT1C LTR MaLR -25 442 391 339 262 14 28 chr9 128331280 128331425 -13940019 + AluSq/x SINE Alu 1 143 -159 306 247 45 107 chr9 128331602 128331780 -13939664 - L1MC/D LINE L1 -2050 5758 5592 353 93 0 0 chr9 128331783 128331837 -13939607 - Alu SINE Alu 0 300 247 2259 102 7 0 chr9 128331848 128332141 -13939303 - AluSp SINE Alu -18 295 1 1959 149 35 0 chr9 128332143 128332310 -13939134 - AluSx SINE Alu -14 298 115 186 43 0 0 chr9 128332310 128332333 -13939111 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1959 149 35 0 chr9 128332333 128332453 -13938991 - AluSx SINE Alu -197 115 1 2177 116 0 3 chr9 128332455 128332747 -13938697 - AluSx SINE Alu -16 296 6 1076 110 5 37 chr9 128332752 128332943 -13938501 + L1MA2 LINE L1 6120 6304 0 22 0 0 0 chr9 128332963 128332985 -13938459 + AT_rich Low_complexity Low_complexity 1 22 0 970 168 50 28 chr9 128333005 128333184 -13938260 + AluJb SINE Alu 122 304 -8 2301 104 0 10 chr9 128333384 128333691 -13937753 + AluSx SINE Alu 1 304 -8 1103 123 7 7 chr9 128334169 128334324 -13937120 - AluSx SINE Alu -157 155 1 248 303 22 11 chr9 128334735 128334824 -13936620 - L2 LINE L2 -3 3269 3180 946 263 93 3 chr9 128334935 128335447 -13935997 + MLT2E LTR ERVL 24 628 0 336 240 13 0 chr9 128335701 128335776 -13935668 + ERVL-E LTR ERVL 319 394 -5370 2208 109 0 0 chr9 128335779 128336114 -13935330 - AluSx SINE Alu 0 335 1 2000 111 0 0 chr9 128336263 128336525 -13934919 - AluSx SINE Alu -1 311 50 365 57 0 19 chr9 128336796 128336849 -13934595 + (CATTC)n Simple_repeat Simple_repeat 5 56 0 2202 121 3 0 chr9 128337038 128337328 -13934116 - AluSx SINE Alu -17 295 5 21 36 0 0 chr9 128337392 128337420 -13934024 + AT_rich Low_complexity Low_complexity 1 28 0 1980 145 3 3 chr9 128337422 128337704 -13933740 + AluJo SINE Alu 1 282 -30 186 43 0 0 chr9 128337709 128337732 -13933712 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2347 68 11 0 chr9 128337878 128338180 -13933264 + AluSp SINE Alu 2 306 0 701 209 67 20 chr9 128338435 128338702 -13932742 - L1MD3 LINE L1 -2 7993 6093 24 32 0 0 chr9 128338715 128338746 -13932698 + AT_rich Low_complexity Low_complexity 1 31 0 1962 124 10 35 chr9 128338747 128339037 -13932407 - AluJb SINE Alu -29 283 1 2340 88 3 3 chr9 128339410 128339705 -13931739 + AluSx SINE Alu 1 295 -17 235 289 36 12 chr9 128339718 128339801 -13931643 - L2 LINE L2 -45 3227 3143 636 169 7 7 chr9 128340110 128340246 -13931198 + L1MA8 LINE L1 5065 5200 -946 1266 152 0 20 chr9 128340246 128340443 -13931001 + AluJo SINE Alu 1 193 -119 3341 136 29 8 chr9 128340445 128341035 -13930409 + L1MA8 LINE L1 5673 6274 -17 2392 109 3 0 chr9 128341037 128341348 -13930096 - AluSx SINE Alu 0 312 1 184 299 161 0 chr9 128341887 128341974 -13929470 + MIR SINE MIR 36 136 -72 2385 92 0 3 chr9 128342206 128342501 -13928943 - AluSx SINE Alu -18 294 1 2128 132 7 7 chr9 128342687 128342991 -13928453 - AluJo SINE Alu -6 306 3 537 214 21 14 chr9 128343615 128343755 -13927689 - L1PA16 LINE L1 -6 6160 6020 713 118 18 0 chr9 128344003 128344113 -13927331 - AluSg/x SINE Alu -29 281 170 24 91 0 0 chr9 128345306 128345372 -13926072 + AT_rich Low_complexity Low_complexity 1 66 0 286 200 57 0 chr9 128345814 128345884 -13925560 + L1ME LINE L1 5597 5670 -451 2365 86 3 0 chr9 128345890 128346181 -13925263 + AluY SINE Alu 2 293 -18 1911 152 26 7 chr9 128348220 128348523 -13922921 + AluSq SINE Alu 1 309 -4 1120 160 0 27 chr9 128348792 128348979 -13922465 - AluJb SINE Alu -50 262 81 573 130 0 30 chr9 128349062 128349162 -13922282 - AluJo SINE Alu -178 134 38 2006 152 3 0 chr9 128349225 128349514 -13921930 - AluSx SINE Alu -22 290 1 341 356 61 6 chr9 128349630 128349793 -13921651 + MIR3 SINE MIR 35 206 -2 892 123 0 0 chr9 128350419 128350549 -13920895 + FLAM_C SINE Alu 2 131 -2 311 206 82 0 chr9 128351145 128351218 -13920226 + MER116 DNA Mariner 2 80 0 2144 96 79 20 chr9 128351706 128352049 -13919395 - THE1B LTR MaLR 0 364 2 11335 82 12 19 chr9 128352050 128352438 -13919006 - THE1B-int LTR MaLR 0 1580 1191 2236 125 3 3 chr9 128352438 128352742 -13918702 - AluSq SINE Alu -9 304 1 11335 82 12 19 chr9 128352742 128353532 -13917912 - THE1B-int LTR MaLR -389 1191 415 2248 113 3 3 chr9 128353532 128353825 -13917619 + AluSq SINE Alu 7 299 -14 11335 82 12 19 chr9 128353825 128354237 -13917207 - THE1B-int LTR MaLR -1165 415 1 1695 124 130 27 chr9 128354237 128354567 -13916877 - THE1B LTR MaLR 0 364 1 2363 84 0 20 chr9 128355819 128356116 -13915328 - AluSc SINE Alu -18 291 1 32 57 0 0 chr9 128356294 128356347 -13915097 + AT_rich Low_complexity Low_complexity 1 53 0 226 195 0 0 chr9 128356762 128356803 -13914641 + L1ME LINE L1 5534 5574 -547 314 327 27 0 chr9 128356804 128356914 -13914530 + L2 LINE L2 2943 3055 -217 1025 153 46 5 chr9 128356998 128357194 -13914250 - MER20 DNA MER1_type 0 219 16 1014 164 0 55 chr9 128357196 128357379 -13914065 - AluJb SINE Alu -4 308 136 2216 124 0 10 chr9 128357381 128357687 -13913757 - AluSx SINE Alu -9 303 1 670 210 7 7 chr9 128357758 128357896 -13913548 + MIR SINE MIR 2 139 -123 278 332 84 25 chr9 128358263 128358465 -13912979 + L2 LINE L2 3058 3271 -1 1920 156 3 0 chr9 128358470 128358758 -13912686 + AluSx SINE Alu 1 289 -23 278 109 0 0 chr9 128358808 128358854 -13912590 + L1MB8 LINE L1 6133 6178 0 2073 142 0 3 chr9 128358864 128359159 -13912285 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr9 128359159 128359180 -13912264 + (CA)n Simple_repeat Simple_repeat 2 22 0 2203 122 7 0 chr9 128359283 128359578 -13911866 - AluSx SINE Alu -15 297 1 323 269 126 0 chr9 128360065 128360184 -13911260 + MIR SINE MIR 20 153 -55 1955 150 0 23 chr9 128362040 128362340 -13909104 - AluSx SINE Alu -19 293 1 2027 122 50 0 chr9 128362429 128362707 -13908737 + AluSg SINE Alu 1 292 -18 195 200 31 46 chr9 128362707 128362762 -13908682 + L2 LINE L2 3258 3313 0 181 287 106 11 chr9 128363514 128363608 -13907836 - MIR3 SINE MIR -92 116 14 24 0 0 0 chr9 128364420 128364444 -13907000 + AT_rich Low_complexity Low_complexity 1 24 0 2157 96 7 7 chr9 128365381 128365708 -13905736 - AluSc SINE Alu 0 327 1 22 0 0 0 chr9 128366483 128366505 -13904939 + AT_rich Low_complexity Low_complexity 1 22 0 2007 152 0 0 chr9 128366808 128367104 -13904340 - AluSx SINE Alu -16 296 1 1837 146 42 0 chr9 128368566 128368853 -13902591 - AluJb SINE Alu -11 301 3 2237 99 17 3 chr9 128369138 128369432 -13902012 - AluSp SINE Alu -15 298 1 216 0 0 0 chr9 128369819 128369843 -13901601 + (A)n Simple_repeat Simple_repeat 1 24 0 1660 142 38 49 chr9 128369867 128370155 -13901289 + AluJo SINE Alu 13 297 -15 207 179 88 0 chr9 128370350 128370406 -13901038 + MER5B DNA MER1_type 70 140 -49 192 279 66 0 chr9 128370475 128370536 -13900908 + MER5A DNA MER1_type 100 164 -25 1856 158 7 24 chr9 128370547 128370845 -13900599 - AluJo SINE Alu -19 293 1 313 305 43 14 chr9 128370925 128371066 -13900378 + MER5A DNA MER1_type 45 189 0 2353 96 3 13 chr9 128371388 128371701 -13899743 - AluSx SINE Alu -2 310 1 1937 146 0 51 chr9 128372492 128372808 -13898636 - AluJo SINE Alu -10 302 3 420 315 72 9 chr9 128372808 128373030 -13898414 + L1MC/D LINE L1 5589 5824 -1984 380 161 0 81 chr9 128373039 128373126 -13898318 + MER116 DNA Mariner 1 80 0 2314 116 0 0 chr9 128373177 128373479 -13897965 + AluSx SINE Alu 1 302 -10 296 191 29 15 chr9 128373502 128373570 -13897874 - MLT1J1 LTR MaLR -133 313 245 191 304 0 0 chr9 128373608 128373654 -13897790 + MIR SINE MIR 206 251 -11 234 242 15 45 chr9 128373734 128373800 -13897644 + MLT1L LTR MaLR 132 195 -420 1441 150 3 102 chr9 128373917 128374251 -13897193 - AluJb SINE Alu 0 302 2 34 0 0 0 chr9 128374413 128374447 -13896997 + AT_rich Low_complexity Low_complexity 1 34 0 552 242 37 42 chr9 128374493 128374683 -13896761 - AluJo SINE Alu -21 291 103 311 107 0 0 chr9 128374898 128374954 -13896490 - AluSq SINE Alu 0 301 246 1116 113 101 6 chr9 128374954 128375122 -13896322 - AluSq SINE Alu -129 184 1 849 118 15 7 chr9 128375122 128375256 -13896188 - AluSg/x SINE Alu -6 304 170 266 169 39 26 chr9 128375866 128375943 -13895501 - MER74B LTR ERVL 0 622 545 706 147 7 67 chr9 128375955 128376105 -13895339 + FLAM_C SINE Alu 2 142 -1 1602 201 61 110 chr9 128376109 128376635 -13894809 - MER74B LTR ERVL -75 547 48 332 228 47 111 chr9 128377000 128377215 -13894229 + MER20 DNA MER1_type 11 214 -5 191 275 69 76 chr9 128377289 128377420 -13894024 - MIR3 SINE MIR -44 164 35 288 281 11 0 chr9 128377910 128377999 -13893445 - L2 LINE L2 -19 3253 3164 1669 156 11 119 chr9 128378041 128378157 -13893287 + MLT1B LTR MaLR 1 128 -262 1925 137 3 20 chr9 128378157 128378449 -13892995 - AluJb SINE Alu -24 288 2 1669 156 11 119 chr9 128378449 128378769 -13892675 + MLT1B LTR MaLR 128 390 0 822 141 92 18 chr9 128378835 128378998 -13892446 - MER53 DNA DNA -12 177 3 365 143 22 44 chr9 128379449 128379540 -13891904 + U5 snRNA snRNA 7 95 -21 1187 135 0 17 chr9 128380179 128380357 -13891087 + AluSg/x SINE Alu 135 309 -1 563 238 52 17 chr9 128380528 128380700 -13890744 - MIR SINE MIR -65 197 20 207 88 0 0 chr9 128381108 128381142 -13890302 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 345 220 18 46 chr9 128381148 128381257 -13890187 - L2 LINE L2 -31 3241 3136 261 196 0 0 chr9 128381370 128381434 -13890010 - MIR SINE MIR -83 125 61 305 288 81 0 chr9 128381582 128381693 -13889751 - MER103 DNA DNA -45 121 2 329 272 48 0 chr9 128382388 128382491 -13888953 + MIR SINE MIR 53 160 -102 391 239 12 0 chr9 128382848 128383015 -13888429 + (CA)n Simple_repeat Simple_repeat 1 169 0 185 266 101 28 chr9 128383900 128384009 -13887435 + L2 LINE L2 3150 3266 -6 270 317 98 16 chr9 128384435 128384558 -13886886 - MIR SINE MIR -41 221 89 1829 132 0 45 chr9 128384906 128385195 -13886249 + AluJb SINE Alu 31 306 -6 210 313 122 0 chr9 128385751 128385866 -13885578 - MIR SINE MIR -118 144 16 318 259 178 7 chr9 128386524 128386659 -13884785 - MIR SINE MIR -25 237 80 350 284 7 54 chr9 128386988 128387136 -13884308 - MIR SINE MIR -91 171 31 250 194 0 90 chr9 128387888 128387955 -13883489 + MIR SINE MIR 87 147 -115 2401 104 0 3 chr9 128388065 128388374 -13883070 + AluSg SINE Alu 1 308 -2 226 274 109 45 chr9 128388665 128388866 -13882578 + MLT1I LTR MaLR 2 215 -194 378 253 32 0 chr9 128388994 128389089 -13882355 - MIR SINE MIR -80 182 85 211 340 0 19 chr9 128389787 128389890 -13881554 + L3 LINE CR1 1371 1471 -106 248 309 43 0 chr9 128390058 128390152 -13881292 - MIR3 SINE MIR -30 178 81 182 254 161 25 chr9 128392864 128392982 -13878462 - MIR3 SINE MIR -68 140 7 235 243 27 0 chr9 128393005 128393079 -13878365 + MIR SINE MIR 60 135 -127 459 297 56 11 chr9 128393864 128394064 -13877380 - MIR SINE MIR -39 223 15 374 262 230 21 chr9 128394983 128395174 -13876270 + MIR SINE MIR 20 250 -12 2132 100 7 10 chr9 128395517 128395827 -13875617 + AluSx SINE Alu 1 309 -3 313 317 74 45 chr9 128396609 128396811 -13874633 + MIR SINE MIR 18 225 -37 443 215 27 60 chr9 128396903 128397052 -13874392 - MIR SINE MIR -56 206 63 381 271 8 25 chr9 128397169 128397287 -13874157 + MER5A DNA MER1_type 1 116 -73 255 243 141 58 chr9 128397505 128397711 -13873733 + L2 LINE L2 3079 3301 -12 2190 110 0 0 chr9 128402395 128402696 -13868748 + AluSx SINE Alu 2 302 -10 290 326 82 12 chr9 128402829 128402975 -13868469 + MIR SINE MIR 15 167 -41 1147 99 0 37 chr9 128403577 128403768 -13867676 - AluSg/x SINE Alu 0 312 129 261 313 57 30 chr9 128404075 128404305 -13867139 - L1ME4a LINE L1 -196 5925 5690 234 339 184 29 chr9 128404814 128405195 -13866249 + L2 LINE L2 1838 2277 -1037 296 272 153 79 chr9 128405381 128405480 -13865964 + L2 LINE L2 2566 2656 -658 2253 84 0 0 chr9 128405480 128405776 -13865668 - AluSx SINE Alu -11 301 6 1833 149 3 0 chr9 128405782 128406070 -13865374 - AluSx SINE Alu -23 289 1 296 272 153 79 chr9 128406070 128406191 -13865253 + L2 LINE L2 2660 2810 -504 685 150 53 0 chr9 128406191 128406304 -13865140 - Charlie1 DNA MER1_type 0 2761 2643 800 132 162 0 chr9 128406305 128406441 -13865003 + AluSg SINE Alu 1 158 -152 4255 169 67 14 chr9 128406559 128406634 -13864810 - Charlie1 DNA MER1_type -167 2594 2524 1842 125 3 31 chr9 128406634 128406945 -13864499 - AluSx SINE Alu 0 308 6 4255 169 67 14 chr9 128406945 128407745 -13863699 - Charlie1 DNA MER1_type -237 2524 1671 810 133 0 66 chr9 128408489 128408640 -13862804 + FLAM_C SINE Alu 2 142 -1 415 211 132 18 chr9 128408718 128408832 -13862612 + MIR SINE MIR 65 191 -71 238 218 77 51 chr9 128408865 128408943 -13862501 + MIR SINE MIR 146 225 -37 1754 183 51 35 chr9 128408991 128409362 -13862082 - MER58D DNA MER1_type -9 377 1 2965 279 136 15 chr9 128409426 128410025 -13861419 - L1MEc LINE L1 -4603 1793 1268 1186 217 128 57 chr9 128410025 128410531 -13860913 + MLT1F LTR MaLR 1 542 0 2965 279 136 15 chr9 128410531 128410576 -13860868 - L1MEc LINE L1 -5128 1268 1230 2275 97 0 0 chr9 128410576 128410874 -13860570 - AluSx SINE Alu -14 298 1 2965 279 136 15 chr9 128410874 128411789 -13859655 - L1MEc LINE L1 -5166 1230 44 6990 50 2 33 chr9 128411803 128413392 -13858052 - SVA Other Other -799 1384 1 892 130 0 43 chr9 128417602 128417740 -13853704 + FLAM_A SINE Alu 2 133 0 208 269 60 0 chr9 128419136 128419203 -13852241 - L2 LINE L2 -5 3308 3238 728 192 0 0 chr9 128419617 128419737 -13851707 + FLAM_C SINE Alu 2 121 -22 351 270 135 12 chr9 128420534 128420697 -13850747 - MER5A DNA MER1_type -5 184 2 23 33 0 0 chr9 128422983 128423013 -13848431 + AT_rich Low_complexity Low_complexity 1 30 0 804 279 28 4 chr9 128425424 128425678 -13845766 - MIR SINE MIR -1 261 2 258 277 54 27 chr9 128425711 128425823 -13845621 - MIR SINE MIR -90 118 4 204 341 48 24 chr9 128427200 128427326 -13844118 - MIR SINE MIR -8 254 126 541 283 90 9 chr9 128427332 128427544 -13843900 + MIR SINE MIR 18 246 -16 206 242 0 32 chr9 128427974 128428036 -13843408 + MIR SINE MIR 84 143 -65 565 321 31 0 chr9 128428576 128428738 -13842706 - MIR3 SINE MIR -12 196 30 456 321 15 15 chr9 128430320 128430516 -13840928 - MER117 DNA MER1_type 0 197 2 394 354 13 0 chr9 128431563 128431721 -13839723 + MER117 DNA MER1_type 1 160 -37 1680 174 3 7 chr9 128431860 128432147 -13839297 - AluJo SINE Alu -26 286 1 234 276 133 20 chr9 128432340 128432438 -13839006 + MIR SINE MIR 106 214 -48 468 271 156 37 chr9 128432489 128432707 -13838737 + MIR SINE MIR 4 247 -15 2357 84 0 0 chr9 128432815 128433114 -13838330 + AluSp SINE Alu 1 299 -14 2375 77 0 0 chr9 128434209 128434520 -13836924 + AluY SINE Alu 1 311 0 512 269 45 13 chr9 128434547 128434703 -13836741 - MIR SINE MIR -82 180 20 1856 155 3 0 chr9 128434944 128435240 -13836204 - AluJb SINE Alu -15 297 1 2335 86 3 6 chr9 128435367 128435681 -13835763 + AluSq SINE Alu 1 313 0 880 181 68 68 chr9 128435689 128435981 -13835463 - L1ME3A LINE L1 -27 6143 5852 1034 142 95 5 chr9 128436103 128436293 -13835151 + MER6B DNA MER2_type 4 210 0 309 313 161 5 chr9 128436381 128436605 -13834839 - MIR SINE MIR -2 260 2 601 321 41 9 chr9 128436646 128436864 -13834580 - MIR SINE MIR -37 225 1 599 281 83 14 chr9 128437158 128437375 -13834069 + MIR SINE MIR 17 248 -14 276 30 0 0 chr9 128437383 128437416 -13834028 + (ATG)n Simple_repeat Simple_repeat 1 33 0 303 283 14 83 chr9 128438128 128438273 -13833171 + L3b LINE CR1 1143 1277 -306 376 320 30 0 chr9 128438564 128438697 -13832747 - MIR SINE MIR -60 202 67 232 247 27 68 chr9 128438851 128438924 -13832520 - L2 LINE L2 0 3313 3244 251 294 56 56 chr9 128439103 128439246 -13832198 + L2 LINE L2 2911 3053 -219 450 257 14 47 chr9 128439288 128439436 -13832008 + MIR SINE MIR 28 170 -92 193 351 92 23 chr9 128439494 128439625 -13831819 + L2 LINE L2 3172 3311 -2 * 400 234 142 19 chr9 128439620 128439780 -13831664 - MIR SINE MIR 0 262 75 514 276 73 77 chr9 128440231 128440612 -13830832 + L2 LINE L2 2891 3268 -4 1918 101 73 3 chr9 128441877 128442164 -13829280 - AluSq SINE Alu -6 307 1 2327 81 0 3 chr9 128443791 128444098 -13827346 - AluSx SINE Alu -6 306 1 219 247 82 27 chr9 128444191 128444264 -13827180 - L2 LINE L2 -40 3232 3156 183 291 114 25 chr9 128445342 128445421 -13826023 - MIR SINE MIR -153 109 24 431 295 18 0 chr9 128445588 128445700 -13825744 + Charlie1 DNA MER1_type 34 147 -2614 2220 106 3 0 chr9 128445709 128446031 -13825413 + AluSq SINE Alu 1 323 0 2121 134 81 73 chr9 128446040 128446307 -13825137 + Charlie1 DNA MER1_type 2265 2528 -233 2165 109 3 10 chr9 128446307 128446609 -13824835 + AluSx SINE Alu 1 300 -12 1889 157 11 0 chr9 128446613 128446899 -13824545 + AluJb SINE Alu 1 289 -23 2121 134 81 73 chr9 128446899 128446946 -13824498 + Charlie1 DNA MER1_type 2530 2575 -186 1798 163 16 19 chr9 128446946 128447259 -13824185 + AluJb SINE Alu 1 312 0 2121 134 81 73 chr9 128447259 128447360 -13824084 + Charlie1 DNA MER1_type 2575 2693 -68 1517 173 9 71 chr9 128447360 128447684 -13823760 + AluJo SINE Alu 1 304 -8 2121 134 81 73 chr9 128447684 128447754 -13823690 + Charlie1 DNA MER1_type 2693 2761 0 212 281 0 16 chr9 128448322 128448386 -13823058 - L2 LINE L2 -13 3259 3197 481 343 73 17 chr9 128449158 128449391 -13822053 - MIR SINE MIR -8 254 9 349 319 137 11 chr9 128450047 128450254 -13821190 + L2 LINE L2 2792 3016 -256 246 193 18 0 chr9 128450350 128450407 -13821037 + L2 LINE L2 3214 3271 -1 308 228 89 20 chr9 128451501 128451602 -13819842 - MIR SINE MIR -74 188 81 286 250 125 9 chr9 128452899 128453009 -13818435 + MIR3 SINE MIR 59 180 -43 308 237 211 19 chr9 128453021 128453177 -13818267 - MIR SINE MIR -67 195 10 457 290 204 11 chr9 128453787 128453963 -13817481 + MIR SINE MIR 29 238 -24 614 199 226 11 chr9 128454423 128454604 -13816840 - MIR SINE MIR 0 262 43 281 323 21 10 chr9 128455001 128455097 -13816347 - MIR SINE MIR -68 140 44 1236 188 125 26 chr9 128455181 128455453 -13815991 + AluJo SINE Alu 1 299 -13 317 83 0 0 chr9 128455614 128455662 -13815782 - AluY SINE Alu -2 300 253 2171 71 4 21 chr9 128455662 128455943 -13815501 - AluY SINE Alu -35 276 1 445 244 96 19 chr9 128456577 128456733 -13814711 - L1ME4a LINE L1 -3 6118 5951 2925 275 76 26 chr9 128456785 128457543 -13813901 - L1MEc LINE L1 -2312 3903 3185 2290 107 3 0 chr9 128457543 128457852 -13813592 - AluSx SINE Alu -2 310 1 2925 275 76 26 chr9 128457852 128458564 -13812880 - L1MEc LINE L1 -3030 3185 2342 266 194 0 0 chr9 128458651 128458713 -13812731 - L1MEc LINE L1 -4137 2259 2198 289 260 150 70 chr9 128459070 128459157 -13812287 - L1ME4a LINE L1 -386 5735 5656 2087 115 0 60 chr9 128459157 128459488 -13811956 - AluSx SINE Alu -1 311 1 289 260 150 70 chr9 128459488 128459627 -13811817 - L1ME4a LINE L1 -465 5656 5491 1820 151 3 56 chr9 128459946 128460251 -13811193 + AluSx SINE Alu 1 289 -23 725 190 0 84 chr9 128460517 128460602 -13810842 + AluJo/FLAM SINE Alu 1 71 -231 2158 84 21 0 chr9 128460602 128460886 -13810558 + AluY SINE Alu 2 291 -20 725 190 0 84 chr9 128460886 128460942 -13810502 + AluJo/FLAM SINE Alu 71 130 -172 400 287 70 28 chr9 128461047 128461190 -13810254 - L2 LINE L2 -208 3064 2916 421 294 112 27 chr9 128462104 128462291 -13809153 + MIR SINE MIR 36 238 -24 1433 155 62 59 chr9 128463343 128463633 -13807811 + AluJb SINE Alu 1 291 -11 1427 168 16 16 chr9 128464020 128464270 -13807174 + AluJo SINE Alu 1 250 -62 478 265 111 48 chr9 128464299 128464493 -13806951 + L1ME4a LINE L1 5716 5896 -225 1350 137 21 17 chr9 128464493 128464726 -13806718 + L1MA4A LINE L1 6064 6297 -6 478 265 111 48 chr9 128464726 128464909 -13806535 + L1ME4a LINE L1 5896 6117 -4 571 255 132 33 chr9 128465483 128465695 -13805749 - MIR SINE MIR -14 248 16 805 265 74 5 chr9 128466366 128466581 -13804863 + MIR SINE MIR 2 231 -31 447 19 0 0 chr9 128466606 128466658 -13804786 + (CAT)n Simple_repeat Simple_repeat 2 53 0 427 280 82 34 chr9 128466719 128466926 -13804518 - MIR SINE MIR -25 237 21 2509 60 0 7 chr9 128468033 128468335 -13803109 - AluY SINE Alu -11 300 1 2049 134 3 26 chr9 128468346 128468659 -13802785 - 7SLRNA srpRNA srpRNA -13 307 2 390 211 42 0 chr9 128469018 128469113 -13802331 + MIR SINE MIR 128 226 -36 201 277 0 0 chr9 128469835 128469882 -13801562 + L2 LINE L2 3264 3310 -3 243 314 86 19 chr9 128470156 128470261 -13801183 - L2 LINE L2 -579 2735 2624 316 271 55 16 chr9 128472115 128472212 -13799232 + MIR SINE MIR 3 103 -105 216 204 68 0 chr9 128472253 128472297 -13799147 + MIR SINE MIR 212 258 -4 510 295 111 5 chr9 128472425 128472615 -13798829 - MIR SINE MIR -52 210 1 508 241 34 58 chr9 128473532 128473739 -13797705 + L1ME LINE L1 5621 5822 -299 1346 188 52 26 chr9 128473863 128474134 -13797310 + AluJo SINE Alu 17 294 -18 23 33 0 0 chr9 128474460 128474490 -13796954 + AT_rich Low_complexity Low_complexity 1 30 0 1669 161 33 7 chr9 128474806 128475080 -13796364 + AluJo SINE Alu 1 281 -31 248 91 23 0 chr9 128475081 128475125 -13796319 + (TA)n Simple_repeat Simple_repeat 2 46 0 777 225 5 57 chr9 128475498 128475707 -13795737 + MIR SINE MIR 37 234 -28 330 238 29 48 chr9 128477410 128477515 -13793929 + MIR SINE MIR 90 192 -70 294 276 13 0 chr9 128477827 128477903 -13793541 - L2 LINE L2 -9 3263 3187 203 61 30 0 chr9 128479484 128479517 -13791927 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 451 87 159 0 chr9 128479519 128479588 -13791856 - LTR23 LTR ERV1 -38 399 320 584 266 79 0 chr9 128479690 128479872 -13791572 + MIR SINE MIR 64 259 -3 430 268 53 58 chr9 128480652 128480842 -13790602 - MIR SINE MIR -7 255 67 2470 84 3 0 chr9 128480844 128481154 -13790290 + AluSp SINE Alu 1 311 -2 2075 110 14 0 chr9 128482220 128482501 -13788943 - AluY SINE Alu 0 311 27 2173 103 0 13 chr9 128482514 128482814 -13788630 - AluSg1 SINE Alu -11 298 3 451 302 43 43 chr9 128482818 128483096 -13788348 - HAL1 LINE L1 -22 2485 2208 2428 85 0 3 chr9 128484018 128484323 -13787121 + AluSg SINE Alu 2 305 -5 2196 112 0 28 chr9 128484332 128484654 -13786790 + AluSq SINE Alu 1 313 0 215 245 0 0 chr9 128484717 128484770 -13786674 + L2 LINE L2 3159 3211 -102 246 156 0 0 chr9 128484955 128485000 -13786444 + A-rich Low_complexity Low_complexity 2 46 0 531 257 141 10 chr9 128486360 128486566 -13784878 - MIR SINE MIR -17 245 13 521 326 100 4 chr9 128486679 128486909 -13784535 + MIR SINE MIR 10 261 -1 348 258 106 30 chr9 128487113 128487311 -13784133 - L1MC4 LINE L1 -1 8041 7829 334 226 19 116 chr9 128487356 128487511 -13783933 - L1ME2 LINE L1 -10 6154 6015 209 355 0 16 chr9 128487553 128487615 -13783829 + MIR SINE MIR 20 80 -182 726 243 114 43 chr9 128488660 128488899 -13782545 + L1MC/D LINE L1 5311 5532 -848 2079 138 7 3 chr9 128488899 128489197 -13782247 - AluSx SINE Alu -13 299 1 726 243 114 43 chr9 128489197 128489401 -13782043 + L1MC/D LINE L1 5532 5777 -603 232 310 28 14 chr9 128489539 128489610 -13781834 - L2 LINE L2 -5 3267 3196 25 31 0 0 chr9 128489789 128489821 -13781623 + AT_rich Low_complexity Low_complexity 1 32 0 454 315 110 46 chr9 128489970 128490510 -13780934 + L2 LINE L2 2564 3254 -18 199 348 78 35 chr9 128490644 128490759 -13780685 + L2 LINE L2 2940 3059 -213 226 159 0 0 chr9 128491044 128491088 -13780356 - MIR SINE MIR -118 144 101 241 197 70 28 chr9 128491117 128491188 -13780256 + HsTC2 DNA Tc2 5 78 -1820 213 39 0 0 chr9 128492029 128492055 -13779389 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 279 332 42 14 chr9 128492543 128492658 -13778786 + MIR SINE MIR 4 119 -89 267 232 43 0 chr9 128492758 128492827 -13778617 + MIR SINE MIR 127 198 -64 1688 183 4 4 chr9 128492951 128493230 -13778214 - AluJb SINE Alu -33 279 1 1038 320 42 20 chr9 128493540 128493940 -13777504 - L2 LINE L2 -509 2805 2397 231 283 0 0 chr9 128494124 128494177 -13777267 + L2 LINE L2 3011 3063 -250 2439 68 0 43 chr9 128498847 128499172 -13772272 - AluY SINE Alu 0 311 1 1986 114 36 0 chr9 128499624 128499904 -13771540 - AluSg SINE Alu -20 290 1 193 307 110 24 chr9 128503010 128503137 -13768307 + MIR SINE MIR 99 236 -26 568 240 120 40 chr9 128503602 128503777 -13767667 - MIR SINE MIR 0 262 74 291 225 27 182 chr9 128503811 128503998 -13767446 - L2 LINE L2 -93 3179 3022 418 322 137 15 chr9 128504064 128504269 -13767175 + MIR SINE MIR 21 250 -12 443 272 35 124 chr9 128504398 128504600 -13766844 - MIR SINE MIR -66 196 13 225 264 11 58 chr9 128506539 128506626 -13764818 + MIR SINE MIR 58 140 -122 22 80 0 0 chr9 128506666 128506716 -13764728 + AT_rich Low_complexity Low_complexity 1 50 0 26 30 0 0 chr9 128508023 128508056 -13763388 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr9 128508148 128508173 -13763271 + AT_rich Low_complexity Low_complexity 1 25 0 551 190 130 0 chr9 128508392 128508492 -13762952 + FLAM_A SINE Alu 9 121 -21 232 222 14 14 chr9 128508536 128508608 -13762836 + (TA)n Simple_repeat Simple_repeat 2 73 0 1991 119 3 14 chr9 128508850 128509143 -13762301 + AluSq SINE Alu 1 290 -23 654 158 94 8 chr9 128509223 128509350 -13762094 + MER58B DNA MER1_type 198 335 -6 1826 170 0 0 chr9 128509357 128509640 -13761804 + AluJb SINE Alu 9 291 -21 294 250 0 0 chr9 128510010 128510070 -13761374 + MER81 DNA DNA 55 114 0 1995 149 13 0 chr9 128510111 128510412 -13761032 + AluJo SINE Alu 1 305 -7 514 268 16 79 chr9 128510852 128511042 -13760402 - MIR SINE MIR -62 200 23 197 355 13 13 chr9 128511263 128511339 -13760105 - L2 LINE L2 -44 3228 3153 870 247 78 16 chr9 128511668 128511911 -13759533 - MIR SINE MIR 0 262 5 236 294 109 49 chr9 128512929 128513276 -13758168 + L1ME LINE L1 5383 5750 -371 233 263 26 0 chr9 128513331 128513407 -13758037 + L2 LINE L2 3163 3240 -73 2061 99 0 43 chr9 128513459 128513763 -13757681 - AluSg SINE Alu -19 291 1 1513 216 56 28 chr9 128514339 128514765 -13756679 + Charlie4a DNA MER1_type 9 446 -62 1978 141 6 16 chr9 128515899 128516211 -13755233 + AluJb SINE Alu 1 309 -3 456 276 186 19 chr9 128517203 128517413 -13754031 + MIR SINE MIR 6 250 -12 203 323 52 10 chr9 128517914 128518010 -13753434 - L2 LINE L2 -2 3270 3171 787 278 58 0 chr9 128518273 128518496 -13752948 - MIR SINE MIR -11 251 16 447 317 7 21 chr9 128518629 128518771 -13752673 - MIR3 SINE MIR -48 160 21 242 236 0 0 chr9 128519198 128519253 -13752191 + L2 LINE L2 3258 3312 -1 2146 96 14 4 chr9 128519298 128519606 -13751838 - AluSg SINE Alu 0 311 1 210 280 147 0 chr9 128520234 128520309 -13751135 + MIR SINE MIR 140 225 -37 328 265 43 86 chr9 128521291 128521453 -13749991 + MIR SINE MIR 88 242 -20 365 255 32 21 chr9 128521746 128521840 -13749604 - L2 LINE L2 -2 3270 3176 1917 169 10 0 chr9 128521879 128522187 -13749257 + AluJb SINE Alu 2 312 0 587 249 85 93 chr9 128522370 128522768 -13748676 + L2 LINE L2 2188 2582 -732 4319 85 26 0 chr9 128522788 128523328 -13748116 + MER41A LTR ERV1 1 554 0 299 150 288 12 chr9 128523412 128523492 -13747952 + MER41A-int LTR ERV1 1 102 -5844 9251 138 114 22 chr9 128523501 128525100 -13746344 + MER41A-int LTR ERV1 1 1746 -4200 740 118 133 15 chr9 128525100 128525235 -13746209 + MER41A-int LTR ERV1 1867 2017 -3929 * 10799 121 37 38 chr9 128525231 128527172 -13744272 + MER41A-int LTR ERV1 2167 4719 -1227 2063 107 0 24 chr9 128527172 128527483 -13743961 + AluSx SINE Alu 1 304 0 10799 121 37 38 chr9 128527483 128528705 -13742739 + MER41A-int LTR ERV1 4719 5941 -5 4188 105 11 0 chr9 128528715 128529259 -13742185 + MER41A LTR ERV1 5 554 0 653 331 80 46 chr9 128529262 128529673 -13741771 + L2 LINE L2 2848 3272 0 213 356 148 0 chr9 128529733 128529848 -13741596 + L2 LINE L2 3141 3272 0 188 172 0 0 chr9 128530378 128530407 -13741037 - L2 LINE L2 -12 3260 3232 * 515 350 44 5 chr9 128530391 128530594 -13740850 - MIR SINE MIR -49 213 3 1473 217 33 33 chr9 128530667 128530966 -13740478 + AluJo SINE Alu 1 299 -3 4674 158 115 9 chr9 128531135 128532065 -13739379 + L1MC2 LINE L1 5316 6344 0 6512 64 17 52 chr9 128532077 128534030 -13737414 + SVA Other Other 1 1386 0 2281 98 0 3 chr9 128534874 128535171 -13736273 - AluSq SINE Alu -17 296 1 4084 186 61 40 chr9 128535524 128535607 -13735837 - L1MC4a LINE L1 -91 7700 7620 5702 56 1 1 chr9 128535607 128536273 -13735171 + L1PA6 LINE L1 5485 6150 -4 4084 186 61 40 chr9 128536273 128537278 -13734166 - L1MC4a LINE L1 -171 7620 5120 318 221 186 52 chr9 128537283 128537455 -13733989 - L1MC4a LINE L1 -1074 5055 4861 561 239 104 49 chr9 128537482 128537829 -13733615 - L1MC4a LINE L1 -4903 1216 851 551 309 89 46 chr9 128538781 128539085 -13732359 + L2 LINE L2 2941 3257 -15 472 264 57 31 chr9 128539118 128539277 -13732167 + MIR SINE MIR 3 165 -97 226 226 177 0 chr9 128539261 128539323 -13732121 + MIR SINE MIR 52 124 -138 * 2592 53 0 0 chr9 128539360 128539659 -13731785 + AluY SINE Alu 1 299 -12 2025 98 47 0 chr9 128540029 128540305 -13731139 - AluSx SINE Alu -23 289 1 22 0 0 0 chr9 128540495 128540517 -13730927 + AT_rich Low_complexity Low_complexity 1 22 0 510 283 54 45 chr9 128540618 128540841 -13730603 + MIR SINE MIR 24 248 -14 518 335 65 58 chr9 128541755 128542328 -13729116 + L2 LINE L2 81 657 -2657 209 276 92 92 chr9 128542377 128542573 -13728871 + L2 LINE L2 2340 2535 -779 3845 165 77 44 chr9 128542573 128542862 -13728582 + L1MB7 LINE L1 4877 5155 -1029 2007 136 7 0 chr9 128542862 128543163 -13728281 + AluSx SINE Alu 1 303 -9 3845 165 77 44 chr9 128543163 128544137 -13727307 + L1MB7 LINE L1 5155 6168 -16 760 301 51 71 chr9 128544145 128544630 -13726814 + L2 LINE L2 2530 3007 -265 524 178 10 20 chr9 128544634 128544735 -13726709 + MIR SINE MIR 82 181 -81 181 0 0 65 chr9 128544736 128544767 -13726677 + (TTA)n Simple_repeat Simple_repeat 3 31 0 360 275 45 65 chr9 128544831 128545031 -13726413 + L2 LINE L2 3118 3313 0 191 188 146 0 chr9 128545041 128545089 -13726355 + L2 LINE L2 3206 3260 -12 2059 129 0 0 chr9 128545942 128546237 -13725207 + AluSq SINE Alu 1 295 -18 496 287 46 42 chr9 128546255 128546357 -13725087 - MIR SINE MIR -8 254 154 1974 144 7 3 chr9 128546357 128546648 -13724796 - AluSx SINE Alu -19 293 2 496 287 46 42 chr9 128546648 128546782 -13724662 - MIR SINE MIR -108 154 17 544 181 102 8 chr9 128547918 128548045 -13723399 + L1ME4a LINE L1 5983 6121 0 2531 50 3 0 chr9 128548197 128548496 -13722948 + AluY SINE Alu 1 300 -11 201 74 0 0 chr9 128548552 128548579 -13722865 + (A)n Simple_repeat Simple_repeat 1 27 0 1868 142 10 26 chr9 128548589 128548891 -13722553 + AluSx SINE Alu 1 297 -15 2083 123 10 3 chr9 128548954 128549255 -13722189 + AluSx SINE Alu 1 303 -9 374 308 168 41 chr9 128549477 128549918 -13721526 + L2 LINE L2 2329 2825 -489 431 242 23 74 chr9 128549935 128550106 -13721338 + MIR SINE MIR 11 180 -28 201 289 79 0 chr9 128550507 128550583 -13720861 + L2 LINE L2 3230 3311 -2 277 299 104 0 chr9 128550585 128550729 -13720715 - L1ME LINE L1 -282 5839 5681 254 221 35 47 chr9 128550737 128550823 -13720621 - L1ME LINE L1 -476 5645 5561 1033 176 10 10 chr9 128552533 128552556 -13718888 + AluJb SINE Alu 112 134 -178 2624 48 3 10 chr9 128552556 128552867 -13718577 + AluY SINE Alu 1 309 -2 1033 176 10 10 chr9 128552867 128553036 -13718408 + AluJb SINE Alu 133 304 -8 810 233 38 46 chr9 128554141 128554333 -13717111 + MIR SINE MIR 2 193 -69 2175 93 31 0 chr9 128554333 128554623 -13716821 + AluSq SINE Alu 1 299 -14 810 233 38 46 chr9 128554623 128554692 -13716752 + MIR SINE MIR 193 261 -1 394 336 53 53 chr9 128554791 128555038 -13716406 - L3 LINE CR1 -74 1503 1257 2010 88 6 94 chr9 128555179 128555508 -13715936 - AluSq SINE Alu -13 300 1 390 316 46 20 chr9 128555924 128556076 -13715368 + MIR SINE MIR 36 191 -71 1746 175 3 0 chr9 128557560 128557845 -13713599 + AluJb SINE Alu 15 300 -12 283 195 156 0 chr9 128558263 128558340 -13713104 - MIR SINE MIR -12 250 162 267 103 0 0 chr9 128558401 128558440 -13713004 + Alu SINE Alu 252 290 -12 1271 216 6 57 chr9 128558468 128558783 -13712661 - AluJo SINE Alu -13 299 1 207 325 0 36 chr9 128561773 128561856 -13709588 + GA-rich Low_complexity Low_complexity 4 83 0 562 258 84 23 chr9 128562485 128562708 -13708736 + MIR SINE MIR 6 246 -16 383 151 55 14 chr9 128562720 128562793 -13708651 + MER116 DNA Mariner 1 76 -4 630 294 78 22 chr9 128562946 128563177 -13708267 - MIR SINE MIR -6 256 13 2164 75 0 18 chr9 128563215 128563493 -13707951 - AluSc SINE Alu -2 307 35 203 189 0 0 chr9 128563848 128563885 -13707559 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 201 74 0 0 chr9 128565046 128565073 -13706371 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 681 203 31 0 chr9 128565088 128565216 -13706228 - FLAM_A SINE Alu -1 132 1 458 267 159 15 chr9 128565424 128565619 -13705825 - MIR SINE MIR -23 239 17 466 318 73 16 chr9 128566255 128566500 -13704944 + L1ME3A LINE L1 462 720 -5399 865 253 79 32 chr9 128566827 128567220 -13704224 + L1ME3A LINE L1 897 1255 -4864 534 288 117 18 chr9 128567219 128567508 -13703936 + L1ME3A LINE L1 2274 2622 -3507 * 940 138 34 223 chr9 128567508 128567799 -13703645 - MER46A DNA MER2_type 0 236 1 534 288 117 18 chr9 128567799 128567946 -13703498 + L1ME3A LINE L1 2622 2753 -3376 26 0 0 0 chr9 128567979 128568005 -13703439 + AT_rich Low_complexity Low_complexity 1 26 0 278 148 0 66 chr9 128568176 128568237 -13703207 - L1ME LINE L1 -465 5699 5643 649 330 78 22 chr9 128568253 128568716 -13702728 + ERVL LTR ERVL 4892 5380 -384 1652 260 18 23 chr9 128568839 128569274 -13702170 + LTR16A LTR ERVL 18 450 0 1005 257 107 93 chr9 128569299 128569371 -13702073 + L1ME3A LINE L1 3530 3600 -2529 2558 50 0 3 chr9 128569371 128569671 -13701773 - AluY SINE Alu -12 299 1 1005 257 107 93 chr9 128569671 128569915 -13701529 + L1ME3A LINE L1 3600 3839 -2290 2134 111 0 7 chr9 128569915 128570203 -13701241 + AluSx SINE Alu 1 286 -26 1005 257 107 93 chr9 128570203 128570982 -13700462 + L1ME3A LINE L1 3839 4641 -1488 1074 98 0 0 chr9 128570984 128571117 -13700327 + AluSq/x SINE Alu 1 133 -179 971 280 90 23 chr9 128571184 128571204 -13700240 + L1ME3A LINE L1 4657 4674 -1479 2179 136 0 3 chr9 128571204 128571513 -13699931 + AluSx SINE Alu 1 308 -4 971 280 90 23 chr9 128571513 128572400 -13699044 + L1ME3A LINE L1 4674 5634 -519 336 210 42 103 chr9 128572435 128572621 -13698823 - MER112 DNA MER1_type -49 211 38 470 176 49 10 chr9 128572621 128572723 -13698721 + L1MA7 LINE L1 6168 6273 -18 336 210 42 103 chr9 128572723 128572750 -13698694 - MER112 DNA MER1_type -222 38 11 1203 215 45 31 chr9 128572755 128573043 -13698401 + AluJo SINE Alu 4 295 -17 700 231 172 61 chr9 128573093 128573359 -13698085 + L1ME3A LINE L1 5675 5967 -137 22 56 0 0 chr9 128573534 128573570 -13697874 + AT_rich Low_complexity Low_complexity 1 36 0 1972 97 0 0 chr9 128573686 128573945 -13697499 + AluSx SINE Alu 54 312 0 1677 208 0 3 chr9 128574423 128574726 -13696718 + AluJb SINE Alu 1 302 -10 779 123 0 0 chr9 128574957 128575063 -13696381 + AluSg/x SINE Alu 190 295 -17 335 257 182 21 chr9 128575085 128575272 -13696172 + L1MC4a LINE L1 4208 4424 -1722 2207 222 143 34 chr9 128575532 128575600 -13695844 + L1MC4a LINE L1 5367 5426 -2382 2059 110 4 0 chr9 128575600 128575872 -13695572 + AluSx SINE Alu 1 273 -39 2207 222 143 34 chr9 128575872 128576550 -13694894 + L1MC4a LINE L1 5426 6195 -1613 1995 159 0 0 chr9 128576563 128576871 -13694573 + AluJb SINE Alu 1 308 -4 342 248 178 23 chr9 128576882 128577011 -13694433 - MIR SINE MIR -8 254 106 * 477 246 69 0 chr9 128577009 128577139 -13694305 + MIR SINE MIR 124 262 0 2706 130 45 63 chr9 128577465 128578004 -13693440 + L1MA5 LINE L1 5753 6281 -19 2293 119 0 0 chr9 128578007 128578317 -13693127 - AluSg SINE Alu 0 310 1 6675 72 16 78 chr9 128578369 128580854 -13690590 + SVA Other Other 13 1409 0 201 108 0 0 chr9 128580981 128581018 -13690426 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2245 129 0 0 chr9 128581088 128581397 -13690047 + AluSx SINE Alu 2 310 -2 1085 165 82 5 chr9 128582044 128582238 -13689206 - MER3 DNA MER1_type 0 209 1 605 248 42 65 chr9 128582418 128582632 -13688812 - MIR SINE MIR 0 262 54 21 0 0 0 chr9 128582953 128582974 -13688470 + AT_rich Low_complexity Low_complexity 1 21 0 370 171 31 27 chr9 128583138 128583258 -13688186 - AluYb8 SINE Alu -120 188 135 315 237 53 0 chr9 128583408 128583484 -13687960 - MIR3 SINE MIR -11 197 118 310 368 177 14 chr9 128583557 128583913 -13687531 - L2 LINE L2 -5 3267 2854 3901 170 80 41 chr9 128584034 128584441 -13687003 + L1MB2 LINE L1 4898 5287 -884 312 48 0 0 chr9 128584441 128584483 -13686961 + (CAA)n Simple_repeat Simple_repeat 1 42 0 3901 170 80 41 chr9 128584483 128584629 -13686815 + L1MB2 LINE L1 5287 5426 -745 342 0 0 0 chr9 128584629 128584667 -13686777 + (CA)n Simple_repeat Simple_repeat 2 39 0 3901 170 80 41 chr9 128584667 128585343 -13686101 + L1MB2 LINE L1 5426 6164 -7 1682 147 0 21 chr9 128585727 128586006 -13685438 - AluJb SINE Alu -39 273 1 213 167 0 24 chr9 128586113 128586155 -13685289 - MIR SINE MIR -64 144 104 2341 157 47 33 chr9 128586244 128586438 -13685006 + MSTB1 LTR MaLR 1 191 -241 1549 141 0 36 chr9 128586438 128586686 -13684758 + AluJo SINE Alu 59 297 -15 2341 157 47 33 chr9 128586686 128586917 -13684527 + MSTB1 LTR MaLR 191 432 0 515 293 88 81 chr9 128587261 128587512 -13683932 + L2 LINE L2 2836 3093 -179 2251 114 0 7 chr9 128587512 128587819 -13683625 + AluSx SINE Alu 1 305 -7 515 293 88 81 chr9 128587819 128588001 -13683443 + L2 LINE L2 3093 3272 0 * 912 343 109 23 chr9 128587993 128588644 -13682800 - L3 LINE CR1 -594 983 277 275 252 45 4 chr9 128592350 128592465 -13678979 - MIR SINE MIR -77 131 11 2362 104 0 16 chr9 128592561 128592878 -13678566 + AluSx SINE Alu 1 312 0 272 263 118 0 chr9 128593221 128593297 -13678147 + MIR SINE MIR 108 192 -70 1969 134 10 0 chr9 128593356 128593646 -13677798 - AluSx SINE Alu -19 293 1 1714 135 0 8 chr9 128594558 128594846 -13676598 + AluSx SINE Alu 28 313 0 796 253 59 14 chr9 128594854 128595075 -13676369 + MIR SINE MIR 32 262 0 271 348 51 17 chr9 128595159 128595337 -13676107 - L2 LINE L2 -113 3159 2976 277 338 112 52 chr9 128595549 128595687 -13675757 + L2 LINE L2 2983 3111 -161 2506 52 0 0 chr9 128595687 128595977 -13675467 - AluY SINE Alu -21 290 1 277 338 112 52 chr9 128595977 128596107 -13675337 + L2 LINE L2 3111 3267 -5 202 309 0 118 chr9 128596218 128596354 -13675090 - MIR3 SINE MIR -45 163 44 395 288 124 53 chr9 128596522 128596748 -13674696 + MIR SINE MIR 20 261 -1 1573 180 9 50 chr9 128597201 128597324 -13674120 + AluJb SINE Alu 4 130 -182 2103 126 0 0 chr9 128597324 128597609 -13673835 + AluSx SINE Alu 1 285 -27 1573 180 9 50 chr9 128597609 128597807 -13673637 + AluJb SINE Alu 130 312 0 2975 130 42 0 chr9 128597975 128598451 -13672993 + MER41E LTR ERV1 17 512 0 2278 99 0 0 chr9 128598479 128598773 -13672671 - AluSx SINE Alu -17 295 2 2140 122 0 10 chr9 128598774 128599069 -13672375 - AluSx SINE Alu -20 292 1 680 267 87 11 chr9 128599149 128599415 -13672029 - L1ME LINE L1 -303 5818 5533 2382 99 0 0 chr9 128601029 128601333 -13670111 + AluSx SINE Alu 1 304 -8 25 0 0 0 chr9 128601515 128601540 -13669904 + AT_rich Low_complexity Low_complexity 1 25 0 400 145 87 0 chr9 128601815 128601884 -13669560 + FLAM SINE Alu 43 117 -26 270 0 0 0 chr9 128601885 128601915 -13669529 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 298 260 205 31 chr9 128601976 128602103 -13669341 + MIR SINE MIR 100 248 -14 244 305 133 9 chr9 128603523 128603628 -13667816 - MIR SINE MIR -122 140 23 21 0 0 0 chr9 128603644 128603665 -13667779 + AT_rich Low_complexity Low_complexity 1 21 0 317 273 53 23 chr9 128603702 128603834 -13667610 + MIR3 SINE MIR 1 136 -72 541 364 11 0 chr9 128603975 128604162 -13667282 - MIR3 SINE MIR -1 207 19 2264 98 20 0 chr9 128604235 128604540 -13666904 + AluSx SINE Alu 1 311 -1 226 49 98 0 chr9 128605351 128605392 -13666052 + Alu SINE Alu 256 300 -1 220 224 254 0 chr9 128605415 128605482 -13665962 + MIR SINE MIR 34 117 -91 475 347 113 26 chr9 128605534 128606117 -13665327 + L2 LINE L2 2385 3024 -248 926 175 0 0 chr9 128606551 128606705 -13664739 - FRAM SINE Alu -12 154 1 2224 105 3 3 chr9 128606897 128607202 -13664242 + AluSq SINE Alu 1 305 -8 234 252 196 19 chr9 128608622 128608729 -13662715 - MIR SINE MIR -11 251 126 787 242 61 27 chr9 128608737 128609222 -13662222 - MER39 LTR ERV1 0 680 5 224 200 118 47 chr9 128609231 128609316 -13662128 - MIR SINE MIR -151 111 21 22 0 0 0 chr9 128610815 128610837 -13660607 + AT_rich Low_complexity Low_complexity 1 22 0 288 154 0 0 chr9 128612875 128612927 -13658517 + (TA)n Simple_repeat Simple_repeat 2 53 0 405 292 199 19 chr9 128613637 128613798 -13657646 + MIR3 SINE MIR 19 208 0 252 105 0 0 chr9 128613928 128613966 -13657478 + U2 snRNA snRNA 1 38 -150 559 289 53 0 chr9 128613997 128614149 -13657295 - MIR SINE MIR -67 195 36 200 150 25 0 chr9 128614171 128614211 -13657233 + L2 LINE L2 3273 3313 0 511 158 0 0 chr9 128614539 128614621 -13656823 + AluJ/FLAM SINE Alu 1 82 -230 248 280 127 45 chr9 128614760 128614917 -13656527 - MIR SINE MIR -14 248 79 2565 239 126 10 chr9 128614952 128615783 -13655661 + L2 LINE L2 1288 2215 -1099 1069 203 9 5 chr9 128615783 128616005 -13655439 + L1ME2 LINE L1 5932 6154 -10 916 270 220 7 chr9 128616038 128616457 -13654987 + L2 LINE L2 2207 2714 -600 1257 266 129 9 chr9 128616569 128617198 -13654246 + L1MC4a LINE L1 5256 5959 -1849 232 300 88 12 chr9 128617243 128617403 -13654041 + L1MC4a LINE L1 6065 6236 -1572 274 205 111 37 chr9 128617476 128617666 -13653778 + L1MC5 LINE L1 7452 7655 -306 1844 178 0 3 chr9 128617670 128617963 -13653481 + AluJb SINE Alu 1 292 -20 2435 82 0 0 chr9 128617973 128618279 -13653165 + AluY SINE Alu 1 306 -5 46 86 0 0 chr9 128618285 128618401 -13653043 + AT_rich Low_complexity Low_complexity 1 116 0 661 217 49 20 chr9 128618423 128618626 -13652818 + L1MC5 LINE L1 7703 7911 -50 1345 247 124 36 chr9 128618673 128619218 -13652226 + L2 LINE L2 2709 3313 0 2458 96 0 0 chr9 128619636 128619948 -13651496 + AluSq SINE Alu 1 312 -1 2464 93 0 0 chr9 128620014 128620324 -13651120 + AluSx SINE Alu 1 310 -2 488 303 38 27 chr9 128620405 128620590 -13650854 + MIR SINE MIR 3 189 -73 1908 153 0 31 chr9 128620591 128620911 -13650533 + AluSx SINE Alu 1 310 -2 197 250 0 0 chr9 128620946 128620986 -13650458 + MER5B DNA MER1_type 17 56 -122 402 172 17 43 chr9 128621088 128621204 -13650240 + LTR7 LTR ERV1 302 414 -36 262 351 0 0 chr9 128621223 128621297 -13650147 + MER5A DNA MER1_type 61 134 -55 203 360 140 26 chr9 128621492 128621606 -13649838 + L2 LINE L2 3146 3272 0 22 0 0 0 chr9 128621652 128621674 -13649770 + AT_rich Low_complexity Low_complexity 1 22 0 487 210 100 0 chr9 128622093 128622193 -13649251 + FLAM_A SINE Alu 1 110 -32 1642 131 8 4 chr9 128622906 128623142 -13648302 - AluSx SINE Alu -27 285 49 974 128 7 7 chr9 128623142 128623283 -13648161 - AluSq/x SINE Alu -171 141 1 277 293 76 52 chr9 128623748 128623961 -13647483 + MIR SINE MIR 5 222 -40 245 247 14 68 chr9 128624033 128624106 -13647338 - L2 LINE L2 -7 3306 3238 2263 98 14 0 chr9 128624473 128624768 -13646676 + AluSx SINE Alu 1 299 -13 2081 138 3 0 chr9 128624770 128625075 -13646369 + AluSq SINE Alu 1 306 -7 23 68 0 0 chr9 128625312 128625356 -13646088 + AT_rich Low_complexity Low_complexity 1 44 0 359 341 69 35 chr9 128627362 128627652 -13643792 - L3 LINE CR1 -50 1527 1228 2162 94 10 0 chr9 128628784 128629097 -13642347 - AluSp SINE Alu 0 316 1 23 33 0 0 chr9 128629101 128629131 -13642313 + AT_rich Low_complexity Low_complexity 1 30 0 1567 172 0 73 chr9 128629209 128629512 -13641932 + AluJo SINE Alu 1 281 -31 189 0 0 0 chr9 128629516 128629537 -13641907 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 417 286 225 38 chr9 128629624 128629837 -13641607 + MIR SINE MIR 8 260 -2 296 53 0 0 chr9 128630831 128630869 -13640575 - U2 snRNA snRNA -150 38 1 251 250 206 54 chr9 128631242 128631334 -13640110 + L2 LINE L2 3151 3256 -16 450 267 131 23 chr9 128631653 128631950 -13639494 + L1MC/D LINE L1 5467 5808 -436 2167 141 41 27 chr9 128631970 128632381 -13639063 + L1MB3 LINE L1 5765 6181 -2 452 159 13 106 chr9 128632399 128632550 -13638894 + MER103 DNA DNA 17 153 -13 1470 119 151 12 chr9 128632728 128632979 -13638465 + AluSg1 SINE Alu 1 286 -23 1998 146 7 0 chr9 128632985 128633287 -13638157 + AluSx SINE Alu 1 304 -8 2016 157 0 3 chr9 128633490 128633789 -13637655 - AluJb SINE Alu -14 298 1 2286 57 7 0 chr9 128633800 128634113 -13637331 - AluY SINE Alu 0 315 1 246 277 0 31 chr9 128634167 128634232 -13637212 - L2 LINE L2 -8 3305 3243 261 318 34 0 chr9 128634415 128634503 -13636941 - MIR SINE MIR -133 129 39 2274 108 0 0 chr9 128634576 128634873 -13636571 - AluSx SINE Alu -15 297 1 21 0 0 0 chr9 128635657 128635678 -13635766 + AT_rich Low_complexity Low_complexity 1 21 0 659 233 40 51 chr9 128636523 128636699 -13634745 - MIR SINE MIR 0 262 89 802 191 17 20 chr9 128636709 128636900 -13634544 + MLT1H LTR MaLR 7 236 -313 1596 164 41 7 chr9 128637360 128637629 -13633815 - AluJb SINE Alu -30 282 5 310 236 142 75 chr9 128638390 128638496 -13632948 - L2 LINE L2 -1 3312 3200 2361 83 10 7 chr9 128638528 128638828 -13632616 - AluSq SINE Alu -12 301 1 1758 245 47 39 chr9 128638840 128639374 -13632070 + MLT1E LTR MaLR 56 593 0 732 239 27 54 chr9 128639801 128640023 -13631421 + MER20 DNA MER1_type 2 217 -2 1219 179 40 5 chr9 128640320 128640543 -13630901 - AluJo SINE Alu -81 231 1 1063 250 228 12 chr9 128640644 128641183 -13630261 - L2 LINE L2 -1 3312 2662 280 358 117 15 chr9 128641235 128641372 -13630072 + L2 LINE L2 3118 3268 -4 2055 98 39 23 chr9 128641606 128641944 -13629500 + AluY SINE Alu 1 343 0 278 286 196 23 chr9 128641971 128642104 -13629340 + MIR3 SINE MIR 40 195 -13 1992 114 10 13 chr9 128642382 128642690 -13628754 - AluSx SINE Alu -1 311 5 1022 197 31 51 chr9 128642852 128643106 -13628338 + MLT2B3 LTR ERVL 306 554 0 266 217 0 0 chr9 128643339 128643399 -13628045 - L1M4 LINE L1 -6406 136 77 339 290 93 47 chr9 128643478 128643671 -13627773 - L2 LINE L2 -940 2374 2173 2283 114 0 0 chr9 128644093 128644390 -13627054 - AluSx SINE Alu -15 297 1 1384 164 0 13 chr9 128644392 128644623 -13626821 - AluJo SINE Alu -1 311 84 434 358 89 45 chr9 128644732 128645442 -13626002 - L2 LINE L2 -1961 1353 613 261 130 22 0 chr9 128645767 128645813 -13625631 + Charlie7 DNA MER1_type 52 98 -2514 2055 133 0 7 chr9 128645956 128646257 -13625187 + AluSx SINE Alu 1 299 -13 520 307 49 33 chr9 128646272 128646578 -13624866 - L1ME2 LINE L1 -141 6023 5713 1498 229 80 32 chr9 128646583 128647116 -13624328 - MLT1F1 LTR MaLR -6 561 2 639 259 241 12 chr9 128647187 128647611 -13623833 + Charlie7 DNA MER1_type 83 603 -2009 2208 122 6 3 chr9 128647608 128647919 -13623525 - AluSx SINE Alu 0 312 1 * 7092 157 11 83 chr9 128647641 128647928 -13623516 + SVA Other Other 58 364 -1022 26 0 0 0 chr9 128647928 128647954 -13623490 + AT_rich Low_complexity Low_complexity 1 26 0 7092 157 11 83 chr9 128647954 128649074 -13622370 + SVA Other Other 364 1386 0 1643 141 65 68 chr9 128649079 128649447 -13621997 + L1MB4 LINE L1 5813 6179 -1 1030 214 62 34 chr9 128649724 128649773 -13621671 + L1 LINE L1 3211 3257 -2889 2214 96 0 3 chr9 128649773 128650065 -13621379 + AluSg1 SINE Alu 1 291 -18 2017 132 0 3 chr9 128650068 128650371 -13621073 + AluSx SINE Alu 1 302 -10 1030 214 62 34 chr9 128650371 128650669 -13620775 + L1 LINE L1 3258 3576 -2570 2014 118 3 29 chr9 128650669 128650983 -13620461 + AluSx SINE Alu 3 308 -4 1030 214 62 34 chr9 128650983 128651014 -13620430 + L1 LINE L1 3576 3605 -2541 1944 135 39 44 chr9 128651184 128651373 -13620071 - MER46B DNA MER2_type -2496 235 46 1691 140 31 10 chr9 128651373 128651665 -13619779 - AluJo SINE Alu -14 298 1 1944 135 39 44 chr9 128651665 128651787 -13619657 - MER46B DNA MER2_type -2685 46 48 1606 151 72 0 chr9 128651787 128652065 -13619379 - AluJb SINE Alu -2 310 13 1944 135 39 44 chr9 128652065 128652114 -13619330 - MER46B DNA MER2_type -2682 49 1 303 222 42 14 chr9 128652156 128652228 -13619216 - MIR SINE MIR -57 205 132 23 0 0 0 chr9 128652982 128653005 -13618439 + AT_rich Low_complexity Low_complexity 1 23 0 191 275 0 0 chr9 128653249 128653289 -13618155 + MIR SINE MIR 67 106 -102 182 290 48 16 chr9 128653805 128653867 -13617577 + MIR SINE MIR 150 213 -49 1230 169 15 92 chr9 128654285 128654415 -13617029 + AluJo SINE Alu 9 147 -165 2308 74 3 0 chr9 128654415 128654712 -13616732 + AluSp SINE Alu 1 298 -15 1230 169 15 92 chr9 128654712 128654732 -13616712 + AluJo SINE Alu 147 167 -145 2224 112 0 0 chr9 128654732 128655037 -13616407 + AluSq SINE Alu 1 305 -8 1230 169 15 92 chr9 128655037 128655210 -13616234 + AluJo SINE Alu 167 308 -4 651 235 7 26 chr9 128655212 128655365 -13616079 + Charlie8 DNA MER1_type 128 277 -2140 200 255 0 20 chr9 128655482 128655533 -13615911 + MIR SINE MIR 63 112 -150 2037 114 7 0 chr9 128655662 128655952 -13615492 + AluSx SINE Alu 11 302 -10 468 292 151 32 chr9 128656322 128656541 -13614903 + MIR SINE MIR 2 246 -16 305 296 45 83 chr9 128656648 128656780 -13614664 + L2 LINE L2 3182 3308 -5 334 282 127 39 chr9 128657001 128657201 -13614243 - MIR SINE MIR -45 217 14 368 240 207 8 chr9 128657385 128657506 -13613938 + MIR SINE MIR 12 156 -106 268 293 98 65 chr9 128657696 128657819 -13613625 + L2 LINE L2 3141 3267 -5 230 273 15 0 chr9 128659058 128659124 -13612320 + (CGGG)n Simple_repeat Simple_repeat 2 68 0 652 276 86 22 chr9 128659680 128659912 -13611532 + MIR SINE MIR 13 259 -3 2215 88 14 0 chr9 128660246 128660543 -13610901 + AluSx SINE Alu 1 301 -11 1826 159 55 3 chr9 128660575 128660902 -13610542 - MER7A DNA MER2_type -2 344 3 655 129 0 30 chr9 128661263 128661364 -13610080 + AluJb SINE Alu 29 126 -186 208 158 0 26 chr9 128661371 128661377 -13610067 + (CATATA)n Simple_repeat Simple_repeat 3 8 -31 1806 103 26 55 chr9 128661377 128661687 -13609757 + AluSc SINE Alu 1 301 -8 208 158 0 26 chr9 128661687 128661718 -13609726 + (CATATA)n Simple_repeat Simple_repeat 8 39 0 993 171 0 6 chr9 128661723 128661898 -13609546 + AluJb SINE Alu 134 307 -5 501 257 39 56 chr9 128661900 128662079 -13609365 + MIR SINE MIR 56 231 -31 223 279 0 16 chr9 128662151 128662212 -13609232 - L2 LINE L2 -64 3208 3149 322 309 218 30 chr9 128662260 128662729 -13608715 - L2 LINE L2 -2032 1282 726 262 299 30 37 chr9 128663089 128663223 -13608221 + AluJb SINE Alu 89 221 -81 796 171 50 7 chr9 128663402 128663542 -13607902 - AluJo SINE Alu -166 146 1 1999 139 0 0 chr9 128663569 128663864 -13607580 + AluSx SINE Alu 1 295 -17 1710 119 63 4 chr9 128663874 128664143 -13607301 + AluSg SINE Alu 1 285 -25 45 19 0 0 chr9 128664143 128664195 -13607249 + AT_rich Low_complexity Low_complexity 1 52 0 2131 120 3 0 chr9 128664595 128664904 -13606540 - AluSx SINE Alu -2 310 1 2406 63 0 13 chr9 128665033 128665348 -13606096 - AluY SINE Alu 0 311 1 651 201 75 85 chr9 128665350 128665643 -13605801 - L2 LINE L2 -10 3303 3014 1001 199 27 23 chr9 128665713 128665934 -13605510 + AluJb SINE Alu 84 305 -7 332 246 120 57 chr9 128665939 128666114 -13605330 - MIR SINE MIR -76 186 1 1880 134 7 0 chr9 128666707 128666999 -13604445 + AluSx SINE Alu 1 294 -18 311 363 62 26 chr9 128667123 128667232 -13604212 - MIR SINE MIR -54 208 88 2074 131 3 0 chr9 128667232 128667537 -13603907 + AluSx SINE Alu 1 306 -6 311 363 62 26 chr9 128667537 128667620 -13603824 - MIR SINE MIR -174 88 9 1772 87 0 16 chr9 128667795 128668037 -13603407 + AluSx SINE Alu 59 296 -16 2072 110 10 0 chr9 128668039 128668331 -13603113 + AluSx SINE Alu 3 297 -15 227 274 27 0 chr9 128668483 128668556 -13602888 - HAL1 LINE L1 0 2507 2433 30 0 0 0 chr9 128668815 128668845 -13602599 + AT_rich Low_complexity Low_complexity 1 30 0 248 186 0 0 chr9 128669976 128670019 -13601425 - L2 LINE L2 0 3313 3271 658 234 45 30 chr9 128670329 128670520 -13600924 + MIR SINE MIR 6 197 -65 2137 105 0 7 chr9 128670845 128671141 -13600303 + AluSx SINE Alu 1 294 -18 300 320 41 25 chr9 128671217 128671339 -13600105 + L2 LINE L2 3149 3272 0 510 228 148 7 chr9 128671373 128671522 -13599922 + MIR SINE MIR 71 240 -22 1569 184 14 0 chr9 128672015 128672346 -13599098 + AluJb SINE Alu 1 335 0 201 216 0 0 chr9 128672309 128672514 -13598930 + GA-rich Low_complexity Low_complexity 1 205 0 207 167 0 0 chr9 128672717 128672759 -13598685 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1015 256 32 55 chr9 128673258 128673404 -13598040 + LTR16A LTR ERVL 77 225 -225 1939 152 0 3 chr9 128673404 128673714 -13597730 + AluSx SINE Alu 4 312 0 1015 256 32 55 chr9 128673714 128673876 -13597568 + LTR16A LTR ERVL 225 378 -72 638 312 141 24 chr9 128673892 128674223 -13597221 + L2 LINE L2 1561 1852 -1462 2058 112 7 0 chr9 128674223 128674526 -13596918 + AluSx SINE Alu 1 305 -7 638 312 141 24 chr9 128674526 128674831 -13596613 + L2 LINE L2 1852 2272 -1042 33 0 0 0 chr9 128675776 128675809 -13595635 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr9 128676039 128676070 -13595374 + AT_rich Low_complexity Low_complexity 1 31 0 185 308 173 0 chr9 128676378 128676482 -13594962 - L2 LINE L2 0 3272 3151 529 99 0 59 chr9 128676508 128676612 -13594832 + L1M3 LINE L1 5516 5608 -575 1671 148 7 7 chr9 128676612 128676890 -13594554 + AluJo SINE Alu 1 278 -34 1712 168 0 17 chr9 128677009 128677300 -13594144 - AluJb SINE Alu -24 288 3 253 119 0 102 chr9 128677330 128677389 -13594055 - L1MC3 LINE L1 -1034 6751 6699 1998 110 0 13 chr9 128677537 128677838 -13593606 + AluSx SINE Alu 1 297 -15 1859 137 10 13 chr9 128677851 128678158 -13593286 + AluSx SINE Alu 3 308 -4 1789 146 33 3 chr9 128678213 128678514 -13592930 - AluSx SINE Alu -2 310 1 207 333 11 43 chr9 128678636 128678729 -13592715 - MIR SINE MIR -57 151 62 1955 113 0 0 chr9 128678826 128679147 -13592297 - AluY SINE Alu 0 321 1 278 186 84 181 chr9 128679347 128679573 -13591871 - Charlie8 DNA MER1_type 0 2417 127 2159 118 3 0 chr9 128679720 128680025 -13591419 - AluSx SINE Alu -6 306 1 1135 184 40 5 chr9 128680406 128680629 -13590815 - AluJo SINE Alu -81 231 1 395 83 0 0 chr9 128680740 128680800 -13590644 + AluSp/q SINE Alu 244 303 0 706 272 21 41 chr9 128680803 128681046 -13590398 + L3b LINE CR1 1174 1411 -172 876 223 21 5 chr9 128681130 128681323 -13590121 + MIR SINE MIR 59 254 -8 189 129 97 0 chr9 128681557 128681588 -13589856 + MIR SINE MIR 195 228 -34 2093 58 94 0 chr9 128681641 128681917 -13589527 - AluY SINE Alu -9 302 1 2007 133 0 0 chr9 128681917 128682209 -13589235 - AluSx SINE Alu -18 294 2 2179 70 3 38 chr9 128683271 128683586 -13587858 + AluY SINE Alu 2 305 -6 751 186 8 0 chr9 128683601 128683730 -13587714 + AluSq/x SINE Alu 3 132 -180 2031 75 3 21 chr9 128684217 128684394 -13587050 - AluSc SINE Alu -1 308 129 246 32 0 0 chr9 128684394 128684425 -13587019 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2346 49 0 0 chr9 128684425 128684709 -13586735 - AluY SINE Alu -27 284 1 2031 75 3 21 chr9 128684709 128684812 -13586632 - AluSc SINE Alu -178 131 32 232 310 17 0 chr9 128685056 128685114 -13586330 - L2 LINE L2 -219 3053 2995 238 289 0 0 chr9 128685171 128685261 -13586183 - L1MC4 LINE L1 -1339 6703 6614 1068 89 30 24 chr9 128685272 128685440 -13586004 - AluSg/x SINE Alu -10 300 132 2230 98 0 0 chr9 128685440 128685737 -13585707 - AluSc SINE Alu -12 297 1 300 223 194 29 chr9 128685920 128686023 -13585421 + MLT1H LTR MaLR 382 501 -48 476 281 235 0 chr9 128686152 128686305 -13585139 - MIR SINE MIR -3 259 71 615 103 10 0 chr9 128686320 128686417 -13585027 - AluY SINE Alu -1 310 213 2196 108 3 3 chr9 128686517 128686823 -13584621 - AluSq SINE Alu -7 306 1 1273 115 19 29 chr9 128686846 128686949 -13584495 + L1MB3 LINE L1 5593 5695 -488 2451 111 105 5 chr9 128686949 128687338 -13584106 - MSTA LTR MaLR 0 428 1 1273 115 19 29 chr9 128687338 128687443 -13584001 + L1MB3 LINE L1 5695 5799 -384 1323 142 0 14 chr9 128687445 128687664 -13583780 - AluSc SINE Alu -17 292 77 258 32 0 0 chr9 128687664 128687695 -13583749 + (TC)n Simple_repeat Simple_repeat 2 32 0 1956 123 0 3 chr9 128687695 128687988 -13583456 - AluSp SINE Alu -21 292 1 2251 133 40 0 chr9 128687988 128688364 -13583080 + L1MB3 LINE L1 5793 6183 0 196 344 82 0 chr9 128688405 128688466 -13582978 - L2 LINE L2 -189 3083 3018 * 248 198 17 147 chr9 128688461 128688577 -13582867 + MIR3 SINE MIR 14 114 -94 2323 77 0 7 chr9 128688629 128688927 -13582517 - AluSx SINE Alu -16 296 1 1834 145 19 13 chr9 128688936 128689246 -13582198 - AluSx SINE Alu 0 312 1 224 217 87 0 chr9 128689265 128689311 -13582133 + MIR SINE MIR 53 102 -160 435 289 30 0 chr9 128689367 128689502 -13581942 + MIR SINE MIR 107 245 -17 2216 94 3 0 chr9 128689566 128689863 -13581581 - AluSq SINE Alu -15 298 1 354 169 0 0 chr9 128689866 128689931 -13581513 + MLT1F LTR MaLR 478 542 0 293 190 36 29 chr9 128690088 128690225 -13581219 + GA-rich Low_complexity Low_complexity 3 140 0 2159 89 0 7 chr9 128690343 128690635 -13580809 - AluSc SINE Alu -19 290 1 518 272 57 32 chr9 128690635 128690793 -13580651 - MIR SINE MIR -99 163 2 604 250 58 103 chr9 128690833 128691125 -13580319 - MLT1J LTR MaLR -2 509 231 1528 263 89 65 chr9 128691172 128691822 -13579622 - MER21B LTR ERV1 -172 691 26 222 147 0 0 chr9 128691867 128691901 -13579543 - L2 LINE L2 -26 3287 3254 489 71 0 0 chr9 128691904 128691974 -13579470 + (TCCA)n Simple_repeat Simple_repeat 3 72 0 339 322 90 0 chr9 128692004 128692181 -13579263 - MLT1L LTR MaLR -15 600 408 2369 67 0 10 chr9 128692195 128692509 -13578935 - AluY SINE Alu 0 311 1 242 277 0 31 chr9 128692563 128692628 -13578816 - L2 LINE L2 -8 3305 3243 251 318 34 0 chr9 128692811 128692899 -13578545 - MIR SINE MIR -133 129 39 2157 108 0 0 chr9 128692972 128693268 -13578176 - AluSx SINE Alu -16 296 1 248 133 22 22 chr9 128693699 128693744 -13577700 - Alu SINE Alu -257 45 1 370 281 0 0 chr9 128693752 128693866 -13577578 + L1M4 LINE L1 1188 1301 -5241 1995 126 7 0 chr9 128693879 128694180 -13577264 + AluSq SINE Alu 8 310 -3 2474 218 47 17 chr9 128694253 128695048 -13576396 + L1M4 LINE L1 1491 2417 -4229 2066 139 80 6 chr9 128695048 128695387 -13576057 + THE1B LTR MaLR 1 364 0 2474 218 47 17 chr9 128695387 128695586 -13575858 + L1M4 LINE L1 2417 2608 -4038 1085 205 22 0 chr9 128695566 128695834 -13575610 + L1M4 LINE L1 3445 3718 -2926 * 213 59 0 59 chr9 128695837 128695888 -13575556 + (TCTCCC)n Simple_repeat Simple_repeat 1 48 0 5565 72 21 56 chr9 128695888 128696787 -13574657 + SVA Other Other 1 868 -518 180 346 136 12 chr9 128697183 128697264 -13574180 + L2 LINE L2 3143 3233 -39 3590 158 54 2 chr9 128697424 128698050 -13573394 + L1MB7 LINE L1 5526 6184 0 2282 98 0 3 chr9 128698508 128698805 -13572639 + AluSq SINE Alu 1 296 -17 744 227 0 0 chr9 128698820 128698996 -13572448 + (CA)n Simple_repeat Simple_repeat 2 177 0 314 222 0 101 chr9 128698996 128699095 -13572349 - L1MC4 LINE L1 -1339 6703 6615 609 248 0 0 chr9 128699100 128699261 -13572183 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 668 155 9 0 chr9 128699264 128699380 -13572064 + FLAM_C SINE Alu 1 117 -16 36 0 0 0 chr9 128699388 128699424 -13572020 + AT_rich Low_complexity Low_complexity 1 36 0 2137 129 3 0 chr9 128699424 128699718 -13571726 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr9 128700482 128700503 -13570941 + AT_rich Low_complexity Low_complexity 1 21 0 2124 103 3 0 chr9 128701267 128701549 -13569895 - AluSp SINE Alu -6 307 25 1135 134 0 6 chr9 128701813 128702035 -13569409 + AluJb SINE Alu 140 360 0 936 198 86 35 chr9 128702161 128702418 -13569026 + MER93b LTR ERV1 98 367 -6 1172 220 101 22 chr9 128702986 128703400 -13568044 - L1ME4a LINE L1 -193 5928 5482 382 178 30 7 chr9 128703721 128703856 -13567588 + (TA)n Simple_repeat Simple_repeat 1 138 0 580 125 0 0 chr9 128704010 128704122 -13567322 + AluY SINE Alu 196 307 -4 2059 151 11 71 chr9 128704126 128704274 -13567170 - L1MC3 LINE L1 -55 7730 7575 2409 62 0 20 chr9 128704274 128704578 -13566866 - AluY SINE Alu -13 298 1 2059 151 11 71 chr9 128704578 128704865 -13566579 - L1MC3 LINE L1 -210 7575 7321 396 130 155 0 chr9 128704985 128705098 -13566346 - Alu SINE Alu -4 298 240 1647 169 21 14 chr9 128705554 128705844 -13565600 + AluJo SINE Alu 3 294 -18 400 143 79 0 chr9 128706152 128706252 -13565192 - AluSg/x SINE Alu 0 319 215 808 247 6 0 chr9 128706515 128706677 -13564767 - FAM SINE Alu -12 163 1 351 327 115 14 chr9 128706691 128706908 -13564536 + MIR SINE MIR 9 247 -15 2207 102 7 3 chr9 128707655 128707959 -13563485 - AluSg SINE Alu 0 310 6 221 227 0 0 chr9 128708116 128708160 -13563284 - MIR3 SINE MIR 0 208 165 21 0 0 75 chr9 128709051 128709091 -13562353 + AT_rich Low_complexity Low_complexity 1 37 0 1887 149 3 3 chr9 128709215 128709511 -13561933 - AluJb SINE Alu -16 296 1 21 36 0 0 chr9 128709989 128710017 -13561427 + AT_rich Low_complexity Low_complexity 1 28 0 188 241 0 93 chr9 128710137 128710191 -13561253 + L2 LINE L2 3152 3200 -72 1309 163 95 80 chr9 128712403 128712815 -13558629 - Charlie1a DNA MER1_type -6 1449 1032 * 2716 180 126 20 chr9 128712809 128713469 -13557975 - Charlie1a DNA MER1_type -723 732 3 250 307 40 0 chr9 128713863 128713938 -13557506 + MIR3 SINE MIR 130 207 -1 403 335 50 22 chr9 128716586 128716836 -13554608 + MIR SINE MIR 1 259 -3 630 171 9 0 chr9 128716895 128717000 -13554444 + FLAM_C SINE Alu 14 119 -24 386 290 130 49 chr9 128717400 128717707 -13553737 + L2 LINE L2 2982 3313 0 357 314 0 0 chr9 128717801 128717925 -13553519 - L1ME LINE L1 -525 5637 5514 4181 169 47 18 chr9 128717939 128718089 -13553355 - L1MB5 LINE L1 0 6174 6030 2255 131 97 5 chr9 128718089 128718479 -13552965 - MSTA LTR MaLR -2 426 1 4181 169 47 18 chr9 128718479 128718969 -13552475 - L1MB5 LINE L1 -144 6030 5502 2256 112 17 0 chr9 128718969 128719264 -13552180 - AluSx SINE Alu -12 300 1 4181 169 47 18 chr9 128719264 128719454 -13551990 - L1MB5 LINE L1 -672 5502 5319 2695 223 86 7 chr9 128719456 128720437 -13551007 - L1MB5 LINE L1 -1107 5039 3907 692 251 35 0 chr9 128720438 128720637 -13550807 - L1MB5 LINE L1 -2295 3851 3646 219 139 0 0 chr9 128720741 128720777 -13550667 + (CCCCCT)n Simple_repeat Simple_repeat 4 39 0 234 143 0 0 chr9 128720778 128720827 -13550617 + (CCG)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr9 128721173 128721201 -13550243 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 128721449 128721480 -13549964 + GC_rich Low_complexity Low_complexity 1 31 0 225 159 0 0 chr9 128722930 128722974 -13548470 + T-rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr9 128724491 128724532 -13546912 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr9 128725378 128725404 -13546040 + AT_rich Low_complexity Low_complexity 1 26 0 327 263 73 15 chr9 128726375 128726512 -13544932 - L1MC5 LINE L1 -54 7907 7763 21 36 0 0 chr9 128727086 128727114 -13544330 + AT_rich Low_complexity Low_complexity 1 28 0 192 40 0 0 chr9 128729064 128729089 -13542355 + (T)n Simple_repeat Simple_repeat 1 25 0 188 232 29 87 chr9 128732229 128732298 -13539146 - MIR SINE MIR -3 259 195 395 224 182 7 chr9 128732373 128732516 -13538928 - MIR SINE MIR -64 198 31 23 54 0 0 chr9 128734033 128734070 -13537374 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr9 128735078 128735103 -13536341 + AT_rich Low_complexity Low_complexity 1 25 0 259 167 21 0 chr9 128837824 128837872 -13433572 + MLT1D LTR MaLR 447 495 -10 639 218 36 96 chr9 128838062 128838225 -13433219 - L1ME1 LINE L1 -93 6073 5935 3616 106 5 26 chr9 128838225 128838791 -13432653 + L1PB1 LINE L1 5597 6150 -1 639 218 36 96 chr9 128838791 128838930 -13432514 - L1ME1 LINE L1 -231 5935 5789 270 196 0 0 chr9 128838988 128839039 -13432405 - L2 LINE L2 0 3313 3263 250 121 103 17 chr9 128839040 128839098 -13432346 - L1MC1 LINE L1 0 6333 6271 314 307 85 26 chr9 128839272 128839441 -13432003 + MIR3 SINE MIR 6 191 -51 327 109 0 0 chr9 128840123 128840169 -13431275 - Alu SINE Alu -254 46 1 2871 23 0 0 chr9 128840843 128841153 -13430291 - AluSx SINE Alu -2 310 1 2283 114 0 0 chr9 128841158 128841464 -13429980 - AluSx SINE Alu -6 306 1 212 184 0 0 chr9 128841723 128841761 -13429683 - MIR SINE MIR -61 147 110 364 287 63 7 chr9 128843053 128843196 -13428248 + MIR3 SINE MIR 40 190 -18 467 92 0 0 chr9 128845004 128845069 -13426375 + HSMAR1 DNA Mariner 1223 1287 0 564 168 0 28 chr9 128845350 128845457 -13425987 + U13 snRNA snRNA 1 104 0 1041 192 22 0 chr9 128846760 128846942 -13424502 - MER5A DNA MER1_type 0 189 4 776 221 17 6 chr9 128846954 128847126 -13424318 - MER58B DNA MER1_type -1 340 167 431 337 94 3 chr9 128847208 128847505 -13423939 + L2 LINE L2 1758 2081 -1233 1270 274 86 36 chr9 128847517 128848212 -13423232 + MER45C DNA AcHobo 1 763 -190 434 100 14 0 chr9 128848378 128848448 -13422996 + L1MB8 LINE L1 5877 5947 -231 243 146 0 0 chr9 128848549 128848590 -13422854 - Alu SINE Alu -200 100 60 1014 162 16 42 chr9 128848596 128848787 -13422657 - AluJb SINE Alu -124 188 3 624 301 106 7 chr9 128848823 128849125 -13422319 + L2 LINE L2 2964 3295 -18 2234 65 58 4 chr9 128849126 128849403 -13422041 - AluY SINE Alu -19 292 1 986 130 11 34 chr9 128849414 128849591 -13421853 - AluSg/x SINE Alu -6 304 132 2535 70 0 0 chr9 128849591 128849891 -13421553 - AluY SINE Alu -10 301 2 258 32 0 0 chr9 128849894 128849925 -13421519 + (TG)n Simple_repeat Simple_repeat 2 32 0 307 304 107 9 chr9 128849932 128850044 -13421400 - L2 LINE L2 -25 3247 3125 23 33 0 0 chr9 128851554 128851584 -13419860 + AT_rich Low_complexity Low_complexity 1 30 0 2284 99 0 3 chr9 128851983 128852277 -13419167 + AluSg SINE Alu 1 293 -17 2192 106 0 0 chr9 128852289 128852581 -13418863 + AluY SINE Alu 14 305 -6 2328 87 3 0 chr9 128852599 128852897 -13418547 + AluSx SINE Alu 1 299 -13 786 175 7 15 chr9 128852899 128853036 -13418408 + AluJb SINE Alu 137 272 -40 1427 131 0 0 chr9 128853397 128853595 -13417849 + AluSc SINE Alu 97 294 -15 183 42 0 0 chr9 128853598 128853622 -13417822 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 1758 195 168 7 chr9 128854103 128854538 -13416906 - MLT1D LTR MaLR 0 505 1 440 276 41 21 chr9 128854538 128854674 -13416770 + MIR SINE MIR 38 179 -83 2354 50 0 88 chr9 128854695 128855036 -13416408 - AluY SINE Alu 0 311 1 207 100 0 0 chr9 128855440 128855470 -13415974 + (A)n Simple_repeat Simple_repeat 1 30 0 15744 32 2 1 chr9 128856489 128858484 -13412960 - L1P LINE L1 -921 5225 3227 410 0 0 0 chr9 128858480 128858528 -13412916 + L1P LINE L1 2981 3028 -3118 * 180 264 0 88 chr9 128859003 128859094 -13412350 - MIR3 SINE MIR -116 92 10 321 299 85 45 chr9 128862407 128862584 -13408860 - MIR3 SINE MIR -7 201 18 1752 117 0 4 chr9 128863645 128863892 -13407552 + AluSq SINE Alu 1 246 -67 363 333 9 0 chr9 128864143 128864254 -13407190 + L2 LINE L2 1843 1954 -1360 22 0 0 0 chr9 128864543 128864565 -13406879 + AT_rich Low_complexity Low_complexity 1 22 0 645 309 12 6 chr9 128865995 128866160 -13405284 + MIR SINE MIR 12 177 -85 463 96 14 0 chr9 128866538 128866611 -13404833 - MER41A LTR ERV1 -480 74 1 487 314 0 0 chr9 128866662 128866786 -13404658 - L2 LINE L2 0 3313 3190 209 133 0 67 chr9 128867634 128867679 -13403765 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 190 296 40 40 chr9 128868289 128868414 -13403030 + MIR SINE MIR 110 234 -28 382 278 13 6 chr9 128868502 128868611 -13402833 + MIR SINE MIR 32 143 -65 813 121 23 30 chr9 128868612 128868744 -13402700 + AluJb SINE Alu 1 131 -181 997 204 81 0 chr9 128869320 128869541 -13401903 + MIR SINE MIR 13 251 -11 1507 150 72 68 chr9 128869553 128869860 -13401584 - AluJo SINE Alu -4 308 1 2324 65 3 3 chr9 128870279 128870571 -13400873 - AluY SINE Alu -19 292 1 500 338 38 24 chr9 128870980 128871441 -13400003 - HERVL LTR ERVL -3679 2002 1551 228 317 43 19 chr9 128871917 128872078 -13399366 - LTR16C LTR ERVL 0 491 327 212 281 39 92 chr9 128872496 128872649 -13398795 + MIR SINE MIR 72 216 -46 276 348 17 17 chr9 128873629 128873744 -13397700 - MIR SINE MIR -74 134 20 298 0 48 0 chr9 128873841 128873883 -13397561 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 7383 36 0 0 chr9 128873883 128875267 -13396177 - L1PA5 LINE L1 -16 6138 4753 22 35 0 0 chr9 128875324 128875353 -13396091 + AT_rich Low_complexity Low_complexity 1 29 0 245 245 0 0 chr9 128975863 128975912 -13295532 + GA-rich Low_complexity Low_complexity 1 49 0 2349 86 0 0 chr9 128976003 128976305 -13295139 + AluSx SINE Alu 1 302 -10 1872 120 3 65 chr9 128976309 128976618 -13294826 + AluSx SINE Alu 1 290 -22 306 221 92 76 chr9 128977048 128977179 -13294265 + MLT1L LTR MaLR 96 228 -387 2345 82 0 13 chr9 128977226 128977530 -13293914 - AluY SINE Alu -11 300 1 2014 115 0 0 chr9 128977540 128977810 -13293634 - AluSx SINE Alu -20 292 23 414 320 75 7 chr9 128977956 128978103 -13293341 - MIR SINE MIR -90 172 16 2010 113 3 3 chr9 128978325 128978616 -13292828 + AluSx SINE Alu 6 296 -16 1604 159 3 74 chr9 128978626 128978952 -13292492 + AluJo SINE Alu 6 308 -4 935 110 0 22 chr9 128978952 128979088 -13292356 + FLAM_C SINE Alu 1 133 0 246 253 35 92 chr9 128979116 128979203 -13292241 + MER5A DNA MER1_type 75 156 -33 436 260 0 0 chr9 128979218 128979314 -13292130 + L2 LINE L2 2225 2320 -994 894 159 41 12 chr9 128979316 128979470 -13291974 - AluSg/x SINE Alu -18 292 131 2191 100 7 0 chr9 128979470 128979760 -13291684 - AluSq SINE Alu -21 292 1 894 159 41 12 chr9 128979760 128979775 -13291669 - AluSg/x SINE Alu -179 131 118 639 225 111 116 chr9 128979775 128980167 -13291277 + L2 LINE L2 2618 3011 -302 2261 89 0 16 chr9 128980167 128980480 -13290964 - AluSg1 SINE Alu 0 309 2 2023 146 0 0 chr9 128980484 128980778 -13290666 - AluSx SINE Alu -18 294 1 639 225 111 116 chr9 128980778 128981092 -13290352 + L2 LINE L2 3014 3312 -1 253 284 129 26 chr9 128981917 128982033 -13289411 - MIR3 SINE MIR -71 137 10 1299 102 0 0 chr9 128982114 128982290 -13289154 + AluSg/x SINE Alu 120 295 -17 192 152 0 0 chr9 128982290 128982323 -13289121 + (TA)n Simple_repeat Simple_repeat 1 33 0 234 235 99 0 chr9 128982323 128982404 -13289040 + L1MC4 LINE L1 6614 6702 -1340 323 371 0 0 chr9 128982412 128982501 -13288943 - L1MC4 LINE L1 -1340 6702 6614 354 344 0 0 chr9 128982513 128982603 -13288841 + L1MC4 LINE L1 6614 6703 -1339 * 356 337 0 11 chr9 128982523 128982618 -13288826 - L1MC4 LINE L1 -1339 6703 6610 1726 142 25 3 chr9 128982620 128982902 -13288542 + AluJo SINE Alu 1 288 -24 451 229 8 9 chr9 128982908 128983022 -13288422 - L1MCa LINE L1 -1339 6983 1995 355 235 11 77 chr9 128983538 128983683 -13287761 + (CAGAGA)n Simple_repeat Simple_repeat 2 134 -38 2060 118 0 28 chr9 128983683 128983816 -13287628 + AluSx SINE Alu 1 136 -176 2284 85 3 22 chr9 128983816 128984133 -13287311 + AluSq SINE Alu 1 311 -2 2060 118 0 28 chr9 128984133 128984320 -13287124 + AluSx SINE Alu 136 312 0 355 235 11 77 chr9 128984320 128984357 -13287087 + (CAGAGA)n Simple_repeat Simple_repeat 134 172 0 367 297 36 43 chr9 128984781 128984919 -13286525 - MIR SINE MIR -35 227 91 1984 131 0 27 chr9 128984930 128985067 -13286377 + AluSx SINE Alu 1 140 -172 1957 112 7 11 chr9 128985067 128985379 -13286065 + AluSx SINE Alu 1 311 0 1984 131 0 27 chr9 128985379 128985538 -13285906 + AluSx SINE Alu 140 290 -22 249 330 93 0 chr9 128985555 128985673 -13285771 + MIR SINE MIR 23 151 -57 318 318 9 0 chr9 128986538 128986674 -13284770 - MIR SINE MIR -78 130 33 433 102 0 0 chr9 128986704 128986763 -13284681 - AluSg/q SINE Alu -15 298 240 1589 72 51 59 chr9 128986954 128987058 -13284386 - AluSg SINE Alu -75 235 132 2530 36 3 3 chr9 128987058 128987362 -13284082 - AluY SINE Alu -7 304 1 1589 72 51 59 chr9 128987362 128987494 -13283950 - AluSg SINE Alu -178 132 1 2107 118 0 7 chr9 128987673 128987979 -13283465 + AluJb SINE Alu 1 304 -8 2098 138 0 0 chr9 128988034 128988338 -13283106 + AluSx SINE Alu 1 304 -8 290 232 95 11 chr9 128988541 128988636 -13282808 + L2 LINE L2 2876 2978 -335 248 288 38 12 chr9 128988802 128988882 -13282562 + L2 LINE L2 3227 3308 -5 1834 95 46 19 chr9 128989363 128989626 -13281818 - AluSq SINE Alu -43 270 1 1457 150 0 124 chr9 128989824 128989948 -13281496 + AluJo SINE Alu 5 143 -169 2014 116 10 17 chr9 128989948 128990241 -13281203 - AluSq SINE Alu -22 291 1 1457 150 0 124 chr9 128990241 128990262 -13281182 + AluJo SINE Alu 143 165 -147 1508 153 10 55 chr9 128990262 128990569 -13280875 + AluSx SINE Alu 5 297 -15 1457 150 0 124 chr9 128990569 128990761 -13280683 + AluJo SINE Alu 165 301 -11 355 290 136 7 chr9 128990960 128991115 -13280329 - MIR SINE MIR -67 195 21 187 323 0 31 chr9 128991171 128991236 -13280208 - L3 LINE CR1 -89 1488 1426 409 283 17 8 chr9 128991715 128991835 -13279609 - MIR3 SINE MIR -29 179 59 285 250 137 73 chr9 128992120 128992244 -13279200 + MIR3 SINE MIR 52 183 -25 262 282 204 14 chr9 128992251 128992393 -13279051 - L2 LINE L2 -1 3271 3103 2113 134 0 3 chr9 128992572 128992878 -13278566 - AluSx SINE Alu -7 305 1 2219 119 0 0 chr9 128992947 128993258 -13278186 + AluSx SINE Alu 1 311 -1 243 315 14 0 chr9 128993262 128993335 -13278109 + L2 LINE L2 3199 3272 0 2312 72 14 0 chr9 128993725 128994017 -13277427 - AluY SINE Alu -15 296 1 1532 165 3 76 chr9 128994050 128994256 -13277188 - AluJo SINE Alu -8 304 84 1829 125 62 7 chr9 128994256 128994544 -13276900 + AluJb SINE Alu 1 304 -8 2204 117 3 0 chr9 128994549 128994858 -13276586 + AluSp SINE Alu 1 310 -3 1532 165 3 76 chr9 128994858 128994973 -13276471 - AluJo SINE Alu -232 80 1 2321 42 7 0 chr9 128995005 128995314 -13276130 + AluY SINE Alu 1 311 0 1815 83 8 4 chr9 128995338 128995580 -13275864 + AluSq SINE Alu 1 243 -70 228 217 0 58 chr9 128995642 128995711 -13275733 - L2 LINE L2 -284 2988 2924 2249 117 0 0 chr9 128996716 128997025 -13274419 - AluSq SINE Alu -4 309 1 330 296 100 2 chr9 128997599 128997739 -13273705 + MIR SINE MIR 1 145 -63 2225 100 0 0 chr9 128997784 128998074 -13273370 - AluSx SINE Alu -22 290 1 21 0 0 0 chr9 128999209 128999230 -13272214 + GC_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr9 128999521 128999569 -13271875 + GC_rich Low_complexity Low_complexity 1 48 0 2317 73 10 0 chr9 129000192 129000492 -13270952 + AluSx SINE Alu 1 303 -9 210 365 15 44 chr9 129000744 129000881 -13270563 + MIR SINE MIR 110 242 -20 1360 155 30 185 chr9 129001379 129001467 -13269977 + MLT1A1 LTR MaLR 1 101 -264 2418 52 0 7 chr9 129001467 129001773 -13269671 + AluY SINE Alu 6 309 -2 1360 155 30 185 chr9 129001773 129001863 -13269581 + MLT1A1 LTR MaLR 101 203 -162 2295 96 0 0 chr9 129001863 129002156 -13269288 + AluSc SINE Alu 1 293 -16 1360 155 30 185 chr9 129002156 129002335 -13269109 + MLT1A1 LTR MaLR 203 283 -82 1472 126 0 5 chr9 129002335 129002542 -13268902 - AluSx SINE Alu -106 206 1 1360 155 30 185 chr9 129002542 129002614 -13268830 + MLT1A1 LTR MaLR 283 365 0 184 278 113 73 chr9 129002779 129002893 -13268551 + L2 LINE L2 1214 1322 -1992 1837 150 0 11 chr9 129002893 129003023 -13268421 + AluSx SINE Alu 6 4294967113 -495 2245 89 6 16 chr9 129003023 129003519 -13267925 + AluSp SINE Alu 1 493 0 184 278 113 73 chr9 129003488 129003651 -13267793 + L2 LINE L2 1322 1471 -1843 3325 157 39 88 chr9 129003700 129004361 -13267083 + LTR8 LTR ERV1 1 624 -67 2420 37 41 0 chr9 129004361 129004656 -13266788 - AluY SINE Alu -4 307 1 3325 157 39 88 chr9 129004656 129004721 -13266723 + LTR8 LTR ERV1 624 691 0 184 350 109 23 chr9 129004726 129004946 -13266498 + L2 LINE L2 1609 1847 -1467 1552 125 47 35 chr9 129005016 129005272 -13266172 - AluJo SINE Alu -53 259 1 251 281 51 83 chr9 129005325 129005542 -13265902 + L2 LINE L2 2767 2976 -338 917 287 134 20 chr9 129005662 129005884 -13265560 - L2 LINE L2 -3 3310 3115 1928 164 3 0 chr9 129005884 129006195 -13265249 + AluSx SINE Alu 1 312 0 917 287 134 20 chr9 129006195 129006459 -13264985 - L2 LINE L2 -198 3115 2783 2180 108 0 3 chr9 129006459 129006764 -13264680 - AluSx SINE Alu -8 304 1 2163 106 0 0 chr9 129006795 129007087 -13264357 - AluSg SINE Alu -1 309 18 1271 103 10 31 chr9 129007090 129007284 -13264160 + AluSg/x SINE Alu 111 300 -10 2211 78 30 3 chr9 129007286 129007581 -13263863 + AluSp SINE Alu 3 305 -8 551 209 45 119 chr9 129009155 129009212 -13262232 - MIR SINE MIR 0 262 202 2001 100 21 24 chr9 129009212 129009503 -13261941 - AluSx SINE Alu -22 290 1 551 209 45 119 chr9 129009503 129009566 -13261878 - MIR SINE MIR -60 202 136 2126 138 0 0 chr9 129009566 129009871 -13261573 - AluSx SINE Alu -7 305 1 551 209 45 119 chr9 129009871 129009993 -13261451 - MIR SINE MIR -126 136 37 181 244 22 0 chr9 129010074 129010119 -13261325 + MIR SINE MIR 103 148 -114 557 339 9 27 chr9 129010232 129010453 -13260991 + MIR SINE MIR 46 262 0 219 320 52 10 chr9 129010474 129010571 -13260873 + L2 LINE L2 3167 3267 -5 218 292 75 17 chr9 129010587 129010707 -13260737 - MIR SINE MIR -127 135 9 544 284 22 0 chr9 129011477 129011611 -13259833 + MIR3 SINE MIR 21 157 -51 432 335 17 52 chr9 129011895 129012125 -13259319 - MIR SINE MIR -19 243 22 2203 81 0 3 chr9 129012266 129012593 -13258851 - AluSg SINE Alu 0 326 1 319 114 0 5 chr9 129012631 129012828 -13258616 + AluJb SINE Alu 11 298 -4 470 329 105 14 chr9 129012949 129013159 -13258285 + MIR SINE MIR 2 230 -32 815 137 0 0 chr9 129013781 129013898 -13257546 + FLAM_C SINE Alu 1 117 -26 23 33 0 0 chr9 129013898 129013928 -13257516 + AT_rich Low_complexity Low_complexity 1 30 0 404 293 23 15 chr9 129015884 129016017 -13255427 + MIR SINE MIR 34 167 -95 * 439 213 113 21 chr9 129016001 129016142 -13255302 - MIR SINE MIR -59 203 50 2126 93 19 26 chr9 129016148 129016458 -13254986 - AluY SINE Alu -1 310 3 249 111 0 0 chr9 129016458 129016494 -13254950 - Alu SINE Alu -266 36 1 1465 138 13 84 chr9 129016500 129016658 -13254786 - L1MB8 LINE L1 0 6178 6048 2059 105 0 11 chr9 129016658 129016967 -13254477 + AluSx SINE Alu 1 306 0 1465 138 13 84 chr9 129016967 129017105 -13254339 - L1MB8 LINE L1 -130 6048 5902 1345 159 9 0 chr9 129017116 129017336 -13254108 - AluJo SINE Alu -16 296 75 2347 97 3 0 chr9 129017476 129017784 -13253660 + AluSp SINE Alu 1 309 -4 703 180 0 0 chr9 129017795 129017906 -13253538 + AluJo/FLAM SINE Alu 1 111 -201 1524 104 0 9 chr9 129017907 129018127 -13253317 - AluSg/x SINE Alu -6 306 89 1829 169 0 3 chr9 129018132 129018433 -13253011 - AluSx SINE Alu -12 300 1 24 0 0 0 chr9 129018447 129018471 -13252973 + AT_rich Low_complexity Low_complexity 1 24 0 2055 102 56 0 chr9 129018475 129018759 -13252685 + AluSq SINE Alu 3 302 -11 492 271 164 0 chr9 129018775 129018952 -13252492 + MIR SINE MIR 57 262 0 2498 74 0 0 chr9 129019036 129019347 -13252097 + AluY SINE Alu 1 311 0 2241 75 0 0 chr9 129019367 129019673 -13251771 + AluSq SINE Alu 1 306 0 352 286 111 29 chr9 129019675 129019846 -13251598 - L2 LINE L2 -23 3290 3106 239 54 27 0 chr9 129020601 129020638 -13250806 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 2141 105 13 3 chr9 129020700 129021005 -13250439 + AluSx SINE Alu 1 308 -4 189 0 0 0 chr9 129021018 129021039 -13250405 + (CAGGC)n Simple_repeat Simple_repeat 4 24 0 1975 128 32 0 chr9 129021040 129021322 -13250122 + AluSx SINE Alu 9 299 -13 2151 83 31 3 chr9 129021322 129021611 -13249833 + AluSc SINE Alu 1 298 -11 2386 71 0 7 chr9 129021668 129021977 -13249467 - AluY SINE Alu -4 307 1 2093 126 10 0 chr9 129021977 129022277 -13249167 - AluSx SINE Alu -7 305 1 481 278 181 43 chr9 129022841 129023224 -13248220 + L2 LINE L2 2579 3013 -300 195 250 0 0 chr9 129023290 129023330 -13248114 + L2 LINE L2 3271 3310 -3 753 158 0 30 chr9 129023424 129023557 -13247887 + FLAM_A SINE Alu 1 129 -4 2428 64 0 0 chr9 129023567 129023864 -13247580 + AluY SINE Alu 1 297 -14 2477 53 0 10 chr9 129023941 129024244 -13247200 - AluY SINE Alu -11 300 1 26 30 0 0 chr9 129024256 129024289 -13247155 + AT_rich Low_complexity Low_complexity 1 33 0 2030 128 3 0 chr9 129024289 129024586 -13246858 + AluSx SINE Alu 1 298 -14 476 176 19 164 chr9 129024588 129024640 -13246804 - AluJo SINE Alu -174 138 80 2018 121 13 0 chr9 129024640 129024945 -13246499 - AluSx SINE Alu 0 312 4 476 176 19 164 chr9 129024945 129025051 -13246393 - AluJo SINE Alu -232 80 3 566 208 92 0 chr9 129025431 129025561 -13245883 + MIR SINE MIR 121 262 0 181 344 89 0 chr9 129025732 129025822 -13245622 - L2 LINE L2 -13 3259 3162 228 317 63 42 chr9 129026077 129026219 -13245225 - L2 LINE L2 -4 3309 3165 224 204 0 0 chr9 129027138 129027187 -13244257 + (CCG)n Simple_repeat Simple_repeat 3 51 0 490 289 47 33 chr9 129031287 129031498 -13239946 + MIR SINE MIR 24 237 -25 351 238 99 10 chr9 129032036 129032137 -13239307 - MER3 DNA MER1_type 0 209 100 402 233 12 0 chr9 129032165 129032251 -13239193 - MIR SINE MIR -82 126 40 305 271 107 25 chr9 129034899 129035021 -13236423 - L2 LINE L2 -2 3311 3180 186 103 0 0 chr9 129035441 129035470 -13235974 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 678 268 83 15 chr9 129035472 129035677 -13235767 + MIR SINE MIR 13 231 -31 391 300 157 24 chr9 129036160 129036370 -13235074 + MIR SINE MIR 13 250 -12 770 258 137 0 chr9 129036647 129036895 -13234549 - L3 LINE CR1 -103 1474 1193 313 331 0 66 chr9 129038513 129038649 -13232795 + MIR SINE MIR 1 127 -135 2077 84 44 7 chr9 129038653 129038950 -13232494 - AluSx SINE Alu -4 308 1 511 271 123 52 chr9 129038955 129039224 -13232220 + L2 LINE L2 3025 3312 -1 2515 58 0 0 chr9 129039241 129039552 -13231892 + AluY SINE Alu 1 311 0 1269 138 0 0 chr9 129039553 129039741 -13231703 + AluSg/x SINE Alu 125 312 0 1762 177 7 3 chr9 129040238 129040532 -13230912 - AluJo SINE Alu -15 297 3 264 30 0 0 chr9 129040532 129040565 -13230879 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2093 85 3 11 chr9 129040565 129040847 -13230597 - AluSg SINE Alu -30 280 1 2154 118 10 0 chr9 129040860 129041165 -13230279 - AluSq SINE Alu -5 308 1 306 283 38 19 chr9 129041379 129041394 -13230050 + L2 LINE L2 3160 3173 -99 1984 134 30 3 chr9 129041394 129041693 -13229751 - AluSx SINE Alu -5 307 1 306 283 38 19 chr9 129041693 129041783 -13229661 + L2 LINE L2 3173 3267 -5 2409 79 0 19 chr9 129041793 129042109 -13229335 - AluSg SINE Alu 0 310 1 1587 169 3 115 chr9 129042481 129042674 -13228770 - AluJo SINE Alu 0 302 162 1935 130 33 0 chr9 129042674 129042975 -13228469 - AluSx SINE Alu -1 311 1 1587 169 3 115 chr9 129042975 129043119 -13228325 - AluJo SINE Alu -140 162 3 621 149 0 119 chr9 129043194 129043328 -13228116 + FLAM_C SINE Alu 1 118 -25 1755 197 3 0 chr9 129043361 129043661 -13227783 - AluJb SINE Alu -11 301 1 2115 113 0 35 chr9 129043669 129043988 -13227456 - AluSg1 SINE Alu -1 308 1 1594 168 49 11 chr9 129043990 129044275 -13227169 - AluJo SINE Alu -16 296 1 21 36 0 0 chr9 129044282 129044310 -13227134 + AT_rich Low_complexity Low_complexity 1 28 0 248 366 16 8 chr9 129044363 129044486 -13226958 + MIR SINE MIR 2 125 -137 1805 162 0 14 chr9 129044502 129044792 -13226652 + AluJb SINE Alu 1 286 -26 824 167 7 22 chr9 129044799 129044937 -13226507 - AluJo SINE Alu -176 136 1 281 282 32 83 chr9 129045183 129045339 -13226105 - MIR SINE MIR -66 196 49 340 231 0 96 chr9 129046462 129046566 -13224878 + L2 LINE L2 3219 3312 -1 225 0 0 0 chr9 129047167 129047192 -13224252 + (TGGG)n Simple_repeat Simple_repeat 2 26 0 199 295 77 13 chr9 129047288 129047366 -13224078 + L2 LINE L2 3150 3232 -40 863 173 0 0 chr9 129047441 129047574 -13223870 - FLAM_C SINE Alu 0 133 1 387 276 48 0 chr9 129047818 129047923 -13223521 + L2 LINE L2 3158 3267 -5 230 148 19 0 chr9 129048043 129048097 -13223347 + (CA)n Simple_repeat Simple_repeat 2 56 0 261 98 0 0 chr9 129049121 129049162 -13222282 + (GGGGA)n Simple_repeat Simple_repeat 4 44 0 329 300 107 0 chr9 129049351 129049501 -13221943 + L2 LINE L2 2155 2320 -994 * 416 352 55 23 chr9 129049499 129049718 -13221726 - L2 LINE L2 -2 3311 3086 457 337 97 34 chr9 129049776 129050132 -13221312 - L2 LINE L2 -342 2972 2640 2300 75 0 7 chr9 129050132 129050427 -13221017 + AluSc SINE Alu 1 293 -16 457 337 97 34 chr9 129050427 129050453 -13220991 - L2 LINE L2 -674 2640 2617 1949 121 17 10 chr9 129050453 129050743 -13220701 + AluSg SINE Alu 1 292 -18 457 337 97 34 chr9 129050743 129050771 -13220673 - L2 LINE L2 -697 2617 2535 667 229 0 0 chr9 129050884 129051002 -13220442 + AluJ SINE Alu 5 122 -180 845 169 35 0 chr9 129051010 129051152 -13220292 + AluJ SINE Alu 128 274 -38 1339 158 4 93 chr9 129051153 129051432 -13220012 - AluJb SINE Alu -58 254 1 2058 120 3 0 chr9 129051441 129051733 -13219711 - AluSg SINE Alu -17 293 1 28 0 0 0 chr9 129051742 129051770 -13219674 + AT_rich Low_complexity Low_complexity 1 28 0 1344 149 169 4 chr9 129051814 129052075 -13219369 + AluSx SINE Alu 1 304 -8 720 179 22 0 chr9 129052082 129052216 -13219228 + MIR SINE MIR 58 194 -68 1752 92 111 4 chr9 129052253 129052524 -13218920 + AluSx SINE Alu 1 300 -12 2388 67 7 0 chr9 129052650 129052947 -13218497 - AluY SINE Alu -12 299 1 194 265 235 0 chr9 129053066 129053168 -13218276 - L2 LINE L2 -4 3309 3184 279 176 77 55 chr9 129053219 129053310 -13218134 + MIR3 SINE MIR 109 201 -7 221 379 48 0 chr9 129053307 129053431 -13218013 + L2 LINE L2 3184 3313 0 * 212 353 41 16 chr9 129053437 129053559 -13217885 + L2 LINE L2 2716 2840 -474 462 290 13 133 chr9 129053616 129053709 -13217735 - L2 LINE L2 -1 3271 3168 2459 38 0 38 chr9 129053709 129053994 -13217450 + AluY SINE Alu 1 283 -28 230 0 54 27 chr9 129053994 129054031 -13217413 + (CAAAA)n Simple_repeat Simple_repeat 2 105 0 2459 38 0 38 chr9 129054031 129054059 -13217385 + AluY SINE Alu 283 311 0 2034 107 17 0 chr9 129054069 129054359 -13217085 + AluSx SINE Alu 1 295 -17 462 290 13 133 chr9 129054359 129054571 -13216873 - L2 LINE L2 -114 3158 2993 324 298 46 8 chr9 129054597 129054728 -13216716 - L3 LINE CR1 -75 1502 1367 321 322 199 0 chr9 129054793 129054939 -13216505 - MIR SINE MIR -6 256 82 579 189 20 153 chr9 129055621 129055781 -13215663 + MIR SINE MIR 1 106 -156 2360 76 3 0 chr9 129055781 129056082 -13215362 + AluSq SINE Alu 1 302 -11 579 189 20 153 chr9 129056082 129056219 -13215225 + MIR SINE MIR 106 260 -2 1947 99 17 17 chr9 129056367 129056659 -13214785 - AluSx SINE Alu -20 292 1 2207 87 13 0 chr9 129056943 129057242 -13214202 + AluSp SINE Alu 1 303 -10 571 260 178 9 chr9 129057562 129057781 -13213663 - MIR SINE MIR -5 257 2 243 205 273 4 chr9 129058837 129058942 -13212502 - MIR SINE MIR -63 145 3 431 262 25 33 chr9 129060233 129060355 -13211089 - MIR3 SINE MIR -50 158 38 283 185 261 39 chr9 129060438 129060546 -13210898 + MER104 DNA Tc2 1 144 -1754 1801 175 0 13 chr9 129060546 129060713 -13210731 - AluJb SINE Alu -13 299 136 2242 109 0 3 chr9 129060713 129061026 -13210418 - AluSx SINE Alu 0 312 1 1801 175 0 13 chr9 129061026 129061161 -13210283 - AluJb SINE Alu -176 136 1 283 185 261 39 chr9 129061161 129061182 -13210262 + MER104 DNA Tc2 144 159 -21 1029 276 42 74 chr9 129061256 129061569 -13209875 + MLT1H LTR MaLR 17 306 -243 740 145 56 171 chr9 129061569 129061621 -13209823 - MER3 DNA MER1_type -2 207 151 2148 110 0 10 chr9 129061621 129061921 -13209523 + AluSx SINE Alu 1 297 -15 740 145 56 171 chr9 129061921 129062102 -13209342 - MER3 DNA MER1_type -58 151 1 1029 276 42 74 chr9 129062102 129062339 -13209105 + MLT1H LTR MaLR 306 549 0 658 308 56 55 chr9 129062774 129062919 -13208525 + L2 LINE L2 2597 2740 -573 1293 156 3 132 chr9 129062919 129063253 -13208191 - AluJo SINE Alu -21 291 1 2099 129 0 7 chr9 129063255 129063558 -13207886 - AluSx SINE Alu -11 301 1 1361 152 111 35 chr9 129063561 129063850 -13207594 - AluSx SINE Alu -1 311 1 658 308 56 55 chr9 129063850 129064395 -13207049 + L2 LINE L2 2741 3293 -20 2159 103 3 19 chr9 129065391 129065702 -13205742 - AluSq SINE Alu -7 306 1 462 350 49 0 chr9 129065889 129066092 -13205352 - MIR SINE MIR -21 241 29 1337 154 0 0 chr9 129066124 129066325 -13205119 + AluSx SINE Alu 1 201 -111 2729 7 0 0 chr9 129066325 129066627 -13204817 + AluYa5 SINE Alu 1 302 -9 183 184 0 0 chr9 129066660 129066698 -13204746 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 206 325 0 26 chr9 129067438 129067515 -13203929 + MIR3 SINE MIR 93 167 -41 2381 52 0 29 chr9 129068157 129068463 -13202981 - AluY SINE Alu -14 297 1 1309 114 108 160 chr9 129068473 129068635 -13202809 - AluSx SINE Alu -11 291 122 2043 117 21 0 chr9 129068635 129068925 -13202519 - AluSg SINE Alu -14 296 1 1422 161 9 96 chr9 129068927 129069249 -13202195 - AluJo SINE Alu -16 296 3 2249 98 0 7 chr9 129069253 129069558 -13201886 - AluY SINE Alu -8 303 1 1309 114 108 160 chr9 129069558 129069694 -13201750 - AluSx SINE Alu -184 118 1 499 335 60 6 chr9 129070221 129070403 -13201041 - L2 LINE L2 -3 3269 3078 225 329 93 14 chr9 129070726 129070866 -13200578 - L2 LINE L2 -30 3283 3133 * 543 341 57 16 chr9 129070856 129071102 -13200342 - MIR SINE MIR -1 261 6 318 291 127 25 chr9 129071417 129071575 -13199869 - MIR SINE MIR -13 249 76 360 344 101 5 chr9 129072020 129072209 -13199235 - MIR SINE MIR -53 209 3 887 112 0 70 chr9 129072484 129072627 -13198817 - FLAM_C SINE Alu 0 133 1 1903 130 56 0 chr9 129072638 129072923 -13198521 - AluSx SINE Alu -11 301 1 457 333 104 22 chr9 129072968 129073190 -13198254 + MIR SINE MIR 6 245 -17 335 290 168 15 chr9 129073284 129073352 -13198092 - MIR SINE MIR 0 262 206 1953 125 10 20 chr9 129073352 129073648 -13197796 - AluSx SINE Alu -19 293 1 1711 137 3 108 chr9 129073648 129073834 -13197610 - AluJo SINE Alu -2 300 96 2401 80 0 6 chr9 129073834 129074146 -13197298 + AluSg SINE Alu 1 310 0 1711 137 3 108 chr9 129074146 129074167 -13197277 - AluJo SINE Alu -206 96 74 1840 180 0 0 chr9 129074167 129074456 -13196988 + AluJb SINE Alu 1 289 -23 1711 137 3 108 chr9 129074456 129074582 -13196862 - AluJo SINE Alu -228 74 1 335 290 168 15 chr9 129074582 129074738 -13196706 - MIR SINE MIR -55 207 3 463 337 32 11 chr9 129075358 129075545 -13195899 - MIR SINE MIR -59 203 13 342 270 123 25 chr9 129075635 129075798 -13195646 + L2 LINE L2 3086 3264 -8 1908 167 3 7 chr9 129075826 129076132 -13195312 - AluSx SINE Alu -7 305 1 272 256 16 96 chr9 129076339 129076464 -13194980 - L2 LINE L2 -7 3265 3151 186 320 90 39 chr9 129076434 129076590 -13194854 + L2 LINE L2 3094 3257 -15 * 293 262 25 82 chr9 129077454 129077576 -13193868 + MIR SINE MIR 31 145 -63 2262 83 0 0 chr9 129078339 129078628 -13192816 + AluSg SINE Alu 9 297 -13 241 148 68 34 chr9 129079658 129079746 -13191698 + (CCCCG)n Simple_repeat Simple_repeat 4 94 0 21 0 0 0 chr9 129079883 129079904 -13191540 + GC_rich Low_complexity Low_complexity 1 21 0 523 22 0 198 chr9 129080201 129080292 -13191152 + tRNA-Arg-AGA tRNA tRNA 1 73 -3 1047 73 0 0 chr9 129080742 129080879 -13190565 + AluSg/x SINE Alu 174 310 0 1670 163 21 7 chr9 129080891 129081179 -13190265 + AluJo SINE Alu 6 297 -15 2004 132 6 10 chr9 129081179 129081489 -13189955 + AluSx SINE Alu 1 310 -2 2434 47 0 13 chr9 129081750 129082050 -13189394 - AluY SINE Alu -14 297 2 1564 162 58 7 chr9 129082446 129082724 -13188720 - AluJb SINE Alu -10 302 11 378 298 159 28 chr9 129082741 129082790 -13188654 - L2 LINE L2 -153 3160 3119 1535 182 3 50 chr9 129082790 129082924 -13188520 + AluJo SINE Alu 7 146 -166 2119 84 0 50 chr9 129082924 129083244 -13188200 + AluSg SINE Alu 1 304 -6 2008 118 7 0 chr9 129083250 129083571 -13187873 + AluSx SINE Alu 1 323 0 1535 182 3 50 chr9 129083571 129083746 -13187698 + AluJo SINE Alu 151 309 -3 378 298 159 28 chr9 129083746 129083948 -13187496 - L2 LINE L2 -194 3119 2876 319 301 41 24 chr9 129084541 129084664 -13186780 + MIR SINE MIR 111 235 -27 240 365 26 9 chr9 129084739 129084854 -13186590 + MIR3 SINE MIR 86 202 -6 1309 209 50 37 chr9 129085009 129085140 -13186304 + AluJb SINE Alu 1 129 -173 2085 134 0 3 chr9 129085140 129085453 -13185991 + AluSq SINE Alu 1 312 -1 1309 209 50 37 chr9 129085453 129085618 -13185826 + AluJb SINE Alu 129 301 -1 344 243 11 97 chr9 129085678 129085801 -13185643 - MIR SINE MIR -67 141 78 2122 91 11 0 chr9 129085801 129086119 -13185325 + AluSc SINE Alu 1 321 0 344 243 11 97 chr9 129086119 129086159 -13185285 - MIR SINE MIR -130 78 36 543 297 36 15 chr9 129086936 129087131 -13184313 - MIR SINE MIR -35 227 29 2126 113 13 7 chr9 129088338 129088648 -13182796 + AluSx SINE Alu 1 312 0 831 167 96 6 chr9 129088648 129088804 -13182640 + AluJo SINE Alu 126 295 -17 180 299 0 82 chr9 129088839 129088936 -13182508 + L2 LINE L2 2950 3038 -234 704 165 86 121 chr9 129089079 129089231 -13182213 + MER33 DNA MER1_type 1 149 -2436 2514 56 0 0 chr9 129089231 129089534 -13181910 + AluY SINE Alu 1 303 -8 704 165 86 121 chr9 129089534 129089603 -13181841 + MER33 DNA MER1_type 149 219 -2366 1729 129 107 0 chr9 129089603 129089875 -13181569 + AluSx SINE Alu 1 301 -11 704 165 86 121 chr9 129089875 129089965 -13181479 + MER33 DNA MER1_type 219 295 -2290 2120 121 0 13 chr9 129089965 129090279 -13181165 - AluSg SINE Alu 0 310 1 704 165 86 121 chr9 129090279 129090304 -13181140 + MER33 DNA MER1_type 295 319 -5 225 317 135 10 chr9 129090317 129090421 -13181023 + L2 LINE L2 3197 3313 0 620 236 54 78 chr9 129090579 129090698 -13180746 - MIR SINE MIR -15 247 136 2053 108 44 0 chr9 129090698 129090995 -13180449 + AluSx SINE Alu 1 310 -2 620 236 54 78 chr9 129090995 129091117 -13180327 - MIR SINE MIR -126 136 12 389 350 29 14 chr9 129091154 129091294 -13180150 - MIR SINE MIR -116 146 5 1078 152 86 0 chr9 129091737 129091935 -13179509 + MER20 DNA MER1_type 1 215 -4 570 254 262 19 chr9 129092083 129092551 -13178893 + L2 LINE L2 2693 3275 -38 1901 151 7 14 chr9 129092552 129092844 -13178600 - AluJb SINE Alu -16 296 7 2153 112 7 0 chr9 129092904 129093200 -13178244 - AluSx SINE Alu -9 303 6 320 242 53 42 chr9 129093225 129093320 -13178124 + L2 LINE L2 3175 3270 -43 1954 125 7 0 chr9 129093320 129093619 -13177825 + AluSx SINE Alu 1 301 0 2288 39 28 3 chr9 129093625 129093910 -13177534 + AluY SINE Alu 1 292 -19 420 319 140 13 chr9 129094070 129094299 -13177145 + MIR SINE MIR 5 262 0 336 262 78 19 chr9 129094917 129095020 -13176424 + MER91C DNA MER1_type 25 133 -7 202 294 0 15 chr9 129095257 129095325 -13176119 + MIR SINE MIR 84 150 -112 185 263 79 26 chr9 129095519 129095595 -13175849 + MIR SINE MIR 30 109 -99 544 110 0 0 chr9 129095596 129095678 -13175766 - AluJo SINE Alu -7 305 224 892 158 82 6 chr9 129095678 129095836 -13175608 - AluJo SINE Alu -142 170 1 212 370 56 0 chr9 129095836 129095944 -13175500 + MIR SINE MIR 101 214 -48 774 171 21 14 chr9 129095945 129096085 -13175359 + AluJo SINE Alu 1 141 -171 2017 121 17 0 chr9 129096089 129096386 -13175058 + AluSx SINE Alu 1 302 -10 1503 164 56 11 chr9 129096413 129096682 -13174762 - AluJb SINE Alu -20 292 12 536 278 35 18 chr9 129096789 129096958 -13174486 - L2 LINE L2 -2 3311 3140 298 295 16 93 chr9 129096957 129097140 -13174304 + MER5B DNA MER1_type 6 174 -4 * 1040 128 0 0 chr9 129098429 129098578 -13172866 + AluJo SINE Alu 142 290 -22 236 200 20 0 chr9 129098583 129098633 -13172811 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1211 208 32 49 chr9 129098895 129099104 -13172340 - MER58B DNA MER1_type -2079 341 130 989 204 86 98 chr9 129099104 129099281 -13172163 - MER2 DNA MER2_type 0 344 166 2349 69 0 0 chr9 129099281 129099571 -13171873 + AluSc SINE Alu 1 290 -19 989 204 86 98 chr9 129099571 129099604 -13171840 - MER2 DNA MER2_type -178 166 134 1831 155 3 7 chr9 129099604 129099736 -13171708 + AluJb SINE Alu 1 132 -180 2209 95 10 0 chr9 129099736 129100031 -13171413 + AluSp SINE Alu 1 298 -15 1831 155 3 7 chr9 129100031 129100194 -13171250 + AluJb SINE Alu 132 295 -17 2033 55 0 4 chr9 129100194 129100447 -13170997 + AluY SINE Alu 43 294 -17 1707 140 75 4 chr9 129100449 129100727 -13170717 + AluSx SINE Alu 1 298 -14 989 204 86 98 chr9 129100727 129100859 -13170585 - MER2 DNA MER2_type -210 134 1 1686 156 0 44 chr9 129100864 129101026 -13170418 - AluJb SINE Alu -17 295 150 2514 47 0 0 chr9 129101026 129101323 -13170121 - AluY SINE Alu -14 297 1 1686 156 0 44 chr9 129101323 129101455 -13169989 - AluJb SINE Alu -162 150 14 1211 208 32 49 chr9 129101455 129101534 -13169910 - MER58B DNA MER1_type -2294 126 51 2079 126 0 10 chr9 129101534 129101865 -13169579 + AluSx SINE Alu 1 312 0 1211 208 32 49 chr9 129101865 129101915 -13169529 - MER58B DNA MER1_type -2369 51 2 201 272 222 58 chr9 129101919 129102000 -13169444 + L3 LINE CR1 1294 1360 -217 2226 88 7 23 chr9 129102000 129102306 -13169138 - AluSx SINE Alu -11 301 1 201 272 222 58 chr9 129102306 129102467 -13168977 + L3 LINE CR1 1360 1576 -1 411 283 54 30 chr9 129102478 129102644 -13168800 - MIR SINE MIR 0 262 93 1328 110 5 28 chr9 129103960 129104178 -13167266 - AluSx SINE Alu -15 297 85 1113 87 7 7 chr9 129104190 129104339 -13167105 - AluSq/x SINE Alu -163 149 1 275 306 0 0 chr9 129104342 129104414 -13167030 - MIR SINE MIR -102 160 89 269 261 99 27 chr9 129104471 129104582 -13166862 - MER5A DNA MER1_type -23 166 48 669 277 51 36 chr9 129104951 129105204 -13166240 - MIR SINE MIR 0 262 6 713 181 0 42 chr9 129105345 129105489 -13165955 + MIR SINE MIR 12 149 -113 1171 184 121 53 chr9 129105490 129105772 -13165672 + AluJo SINE Alu 1 301 -1 429 191 0 86 chr9 129105772 129105877 -13165567 - AluSx SINE Alu -216 97 2 2373 56 0 31 chr9 129106803 129107123 -13164321 - AluY SINE Alu -1 310 1 2217 109 0 3 chr9 129107123 129107434 -13164010 - AluSx SINE Alu -2 310 1 2275 88 7 0 chr9 129107456 129107761 -13163683 + AluSg SINE Alu 1 307 -3 1175 112 0 22 chr9 129107761 129107930 -13163514 + AluSg/x SINE Alu 125 291 -19 2182 112 0 3 chr9 129107930 129108233 -13163211 + AluSx SINE Alu 1 302 -10 2454 66 0 0 chr9 129108235 129108536 -13162908 + AluY SINE Alu 3 303 -8 291 197 66 0 chr9 129109132 129109193 -13162251 + MIR SINE MIR 8 72 -190 188 221 0 0 chr9 129110010 129110050 -13161394 - MIR SINE MIR -110 152 114 1106 175 25 0 chr9 129110063 129110263 -13161181 + AluJo SINE Alu 85 289 -23 216 301 24 12 chr9 129110267 129110350 -13161094 - MER5A DNA MER1_type -80 109 26 181 340 60 20 chr9 129110368 129110468 -13160976 - MIR SINE MIR -149 113 10 1042 152 12 12 chr9 129111043 129111214 -13160230 + FAM SINE Alu 2 172 -3 257 257 157 5 chr9 129111234 129111448 -13159996 + L1M4 LINE L1 5187 5431 -744 1241 126 184 0 chr9 129111474 129111697 -13159747 - AluYa5 SINE Alu -47 264 1 518 128 8 86 chr9 129111697 129111814 -13159630 - MLT2D LTR ERVL -205 209 102 2205 80 20 3 chr9 129111815 129112116 -13159328 - AluY SINE Alu -5 306 1 2096 105 0 0 chr9 129112118 129112395 -13159049 - AluSx SINE Alu -10 302 26 311 175 0 0 chr9 129112396 129112453 -13158991 - AluS SINE Alu -242 57 1 1118 201 32 99 chr9 129112455 129112613 -13158831 - AluJo SINE Alu -9 293 165 1906 150 0 3 chr9 129112613 129112919 -13158525 - AluSx SINE Alu -7 305 1 1118 201 32 99 chr9 129112919 129113073 -13158371 - AluJo SINE Alu -137 165 2 2228 104 0 0 chr9 129113094 129113393 -13158051 - AluSx SINE Alu -13 299 1 1584 151 0 0 chr9 129113393 129113632 -13157812 + AluSx SINE Alu 62 300 -12 2097 104 17 0 chr9 129113632 129113931 -13157513 + AluSg SINE Alu 1 304 -6 1557 162 30 34 chr9 129114371 129114668 -13156776 + AluJo SINE Alu 2 297 -15 1946 139 0 29 chr9 129114679 129114988 -13156456 + AluSx SINE Alu 1 300 -12 192 284 193 18 chr9 129115107 129115216 -13156228 + MIR SINE MIR 37 164 -98 215 349 53 30 chr9 129115224 129115356 -13156088 - L2 LINE L2 -2 3270 3136 1107 163 0 0 chr9 129115455 129115621 -13155823 - AluSg/x SINE Alu -15 295 130 227 170 0 0 chr9 129115641 129115688 -13155756 + L1MB3 LINE L1 6127 6173 -10 1615 249 161 23 chr9 129115710 129116141 -13155303 + L2 LINE L2 1700 2070 -1244 1770 155 3 29 chr9 129116141 129116450 -13154994 - AluSx SINE Alu -11 301 1 1615 249 161 23 chr9 129116450 129116716 -13154728 + L2 LINE L2 2070 2493 -821 2021 128 0 3 chr9 129116716 129117013 -13154431 - AluSg SINE Alu -8 302 7 2077 118 17 0 chr9 129117021 129117317 -13154127 - AluSx SINE Alu -11 301 1 1159 105 6 6 chr9 129117326 129117498 -13153946 - AluSp SINE Alu -7 306 135 260 160 170 75 chr9 129117500 129117594 -13153850 + L2 LINE L2 2484 2586 -728 2296 76 7 3 chr9 129117637 129117938 -13153506 + AluSp SINE Alu 1 302 -11 1288 194 12 4 chr9 129118005 129118263 -13153181 + AluJb SINE Alu 21 280 -32 240 35 0 0 chr9 129118269 129118298 -13153146 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 394 173 88 131 chr9 129118299 129118412 -13153032 + L2 LINE L2 2773 2889 -424 2358 76 0 3 chr9 129118412 129118715 -13152729 - AluSg SINE Alu -8 302 1 2255 109 0 3 chr9 129118721 129119034 -13152410 - AluSx SINE Alu 0 312 1 838 146 0 29 chr9 129119037 129119174 -13152270 - FLAM_A SINE Alu 0 133 1 394 173 88 131 chr9 129119174 129119330 -13152114 + L2 LINE L2 2896 3038 -275 1087 124 0 0 chr9 129119361 129119514 -13151930 + AluSg/x SINE Alu 147 299 -13 243 250 43 22 chr9 129119529 129119621 -13151823 + MER69A DNA AcHobo 63 156 -21 660 171 77 41 chr9 129119622 129119792 -13151652 + L2 LINE L2 3095 3270 -43 211 294 0 0 chr9 129120146 129120197 -13151247 - MIR SINE MIR -63 145 95 2302 79 3 22 chr9 129120368 129120685 -13150759 - AluY SINE Alu 0 311 1 2264 100 0 0 chr9 129120687 129120987 -13150457 - AluSq SINE Alu -13 300 1 2174 95 3 0 chr9 129121685 129122000 -13149444 + AluSq SINE Alu 1 316 0 1578 161 45 0 chr9 129122071 129122338 -13149106 - AluJb SINE Alu -13 299 21 1386 188 4 23 chr9 129122374 129122657 -13148787 + AluJb SINE Alu 27 304 0 554 265 60 20 chr9 129122734 129122934 -13148510 + MIR SINE MIR 53 260 -2 180 319 43 43 chr9 129123216 129123310 -13148134 + MIR SINE MIR 14 107 -155 205 291 82 51 chr9 129123378 129123536 -13147908 + MIR SINE MIR 99 261 -1 1277 233 14 3 chr9 129123771 129123912 -13147532 - AluJb SINE Alu -22 290 152 2490 46 3 0 chr9 129123912 129124216 -13147228 - AluY SINE Alu -6 305 1 1277 233 14 3 chr9 129124216 129124361 -13147083 - AluJb SINE Alu -160 152 1 2777 16 0 0 chr9 129125136 129125451 -13145993 - AluYb8 SINE Alu -3 315 1 2137 93 0 0 chr9 129125451 129125731 -13145713 - AluSx SINE Alu -12 300 21 2077 141 0 3 chr9 129126141 129126453 -13144991 + AluSx SINE Alu 1 311 -1 2201 102 0 0 chr9 129126550 129126853 -13144591 + AluSq SINE Alu 5 307 -6 417 275 63 7 chr9 129127106 129127248 -13144196 + MIR SINE MIR 34 183 -79 1892 136 3 38 chr9 129127380 129127696 -13143748 - AluSx SINE Alu -7 305 1 325 271 37 3 chr9 129127926 129128064 -13143380 + MLT1J2 LTR MaLR 71 255 -256 349 220 73 37 chr9 129128119 129128228 -13143216 + MLT1J2 LTR MaLR 338 450 0 314 214 255 10 chr9 129128228 129128326 -13143118 - MIR SINE MIR -104 158 37 2495 40 0 46 chr9 129128346 129128672 -13142772 - AluY SINE Alu 0 311 1 739 182 16 0 chr9 129128680 129128801 -13142643 - AluSq/x SINE Alu -189 124 2 1847 111 0 8 chr9 129128806 129129111 -13142333 - AluSg SINE Alu 0 325 23 2094 119 0 3 chr9 129129120 129129413 -13142031 - AluSx SINE Alu -18 294 3 2036 105 3 0 chr9 129129428 129129714 -13141730 - AluSc SINE Alu -16 293 7 2338 64 3 16 chr9 129129729 129130043 -13141401 - AluY SINE Alu -1 310 1 504 83 0 60 chr9 129130043 129130119 -13141325 - AluSp/q SINE Alu -17 296 224 1024 69 8 0 chr9 129130121 129130252 -13141192 - AluSp SINE Alu -180 133 2 2162 85 0 0 chr9 129130256 129130570 -13140874 - AluY SINE Alu 0 314 1 1605 108 151 4 chr9 129130649 129130908 -13140536 + AluSg1 SINE Alu 1 297 -12 715 147 9 0 chr9 129130929 129131038 -13140406 - FLAM_C SINE Alu -32 111 2 942 199 47 14 chr9 129131088 129131299 -13140145 + MIR SINE MIR 21 238 -24 458 303 35 56 chr9 129132202 129132489 -13138955 + L2 LINE L2 3032 3312 -1 2150 113 3 0 chr9 129132495 129132797 -13138647 + AluSx SINE Alu 2 304 -8 2069 117 0 31 chr9 129132875 129133192 -13138252 - AluSg SINE Alu -3 307 1 2165 97 17 0 chr9 129133192 129133491 -13137953 - AluSp SINE Alu -9 304 1 183 194 0 0 chr9 129133491 129133522 -13137922 - MIR SINE MIR -229 33 3 243 355 84 0 chr9 129134483 129134590 -13136854 - L2 LINE L2 -14 3258 3143 557 65 8 65 chr9 129135030 129135153 -13136291 + (TTCC)n Simple_repeat Simple_repeat 4 119 0 851 96 24 0 chr9 129135177 129135302 -13136142 - AluSc SINE Alu -15 294 167 2187 127 0 0 chr9 129135374 129135681 -13135763 - AluSx SINE Alu -5 307 1 376 276 164 0 chr9 129135905 129136039 -13135405 + MLT1J LTR MaLR 20 175 -336 2270 82 24 0 chr9 129136046 129136339 -13135105 - AluSg SINE Alu -10 300 1 845 171 24 37 chr9 129136352 129136516 -13134928 - FRAM SINE Alu -18 158 1 637 227 31 3 chr9 129136518 129136750 -13134694 + MLT1J LTR MaLR 195 508 -3 2046 99 0 18 chr9 129136833 129137010 -13134434 - AluSx SINE Alu 0 310 139 2359 79 0 22 chr9 129137010 129137325 -13134119 - AluSq SINE Alu -5 308 1 2046 99 0 18 chr9 129137325 129137458 -13133986 - AluSx SINE Alu -171 139 5 218 261 0 0 chr9 129137547 129137593 -13133851 + L2 LINE L2 3221 3266 -6 747 284 42 49 chr9 129137833 129137941 -13133503 + L2 LINE L2 3009 3116 -197 2204 97 3 13 chr9 129137941 129138251 -13133193 - AluSg SINE Alu -3 307 1 1316 198 22 57 chr9 129138251 129138565 -13132879 - AluJo SINE Alu -9 303 1 747 284 42 49 chr9 129138565 129138761 -13132683 + L2 LINE L2 3114 3312 -1 224 358 112 8 chr9 129138822 129138956 -13132488 - L2 LINE L2 -179 3093 2946 269 187 103 93 chr9 129138969 129139022 -13132422 - MER2 DNA MER2_type -25 320 269 2235 105 7 0 chr9 129139022 129139328 -13132116 + AluSg SINE Alu 1 308 -2 269 187 103 93 chr9 129139328 129139381 -13132063 - MER2 DNA MER2_type -76 269 213 2014 74 0 28 chr9 129139540 129139823 -13131621 + AluY SINE Alu 1 275 -36 180 0 0 0 chr9 129139826 129139846 -13131598 + (T)n Simple_repeat Simple_repeat 1 20 0 4267 187 36 46 chr9 129140174 129141137 -13130307 + LTR13 LTR ERVK 1 954 0 2263 92 10 0 chr9 129141289 129141595 -13129849 + AluSx SINE Alu 3 311 -1 291 277 145 44 chr9 129141606 129141765 -13129679 + MIR SINE MIR 48 222 -40 2067 117 17 0 chr9 129141779 129142070 -13129374 - AluSx SINE Alu -16 296 1 1830 168 0 9 chr9 129142101 129142416 -13129028 + AluSx SINE Alu 1 312 0 2126 104 3 7 chr9 129142788 129143086 -13128358 - AluSx SINE Alu -15 297 1 669 170 0 0 chr9 129145840 129145946 -13125498 - FLAM_A SINE Alu -17 125 20 286 299 142 0 chr9 129146608 129146735 -13124709 + MIR SINE MIR 48 192 -70 406 258 77 45 chr9 129146918 129147073 -13124371 + MIR3 SINE MIR 5 164 -44 2191 103 20 0 chr9 129147852 129148154 -13123290 - AluSq SINE Alu -5 308 1 25 0 0 0 chr9 129148299 129148324 -13123120 + AT_rich Low_complexity Low_complexity 1 25 0 1811 155 16 10 chr9 129149282 129149592 -13121852 - AluSx SINE Alu 0 312 1 2209 96 7 3 chr9 129149924 129150225 -13121219 + AluSx SINE Alu 1 302 -10 1312 187 55 0 chr9 129151106 129151341 -13120103 + AluJo SINE Alu 1 248 -64 451 310 90 0 chr9 129153439 129153594 -13117850 + MIR3 SINE MIR 31 199 -9 365 302 43 9 chr9 129153601 129153717 -13117727 + L2 LINE L2 3188 3307 -6 184 268 110 12 chr9 129154960 129155042 -13116402 + MIR3 SINE MIR 13 102 -106 304 278 103 10 chr9 129155073 129155170 -13116274 + L1MC4a LINE L1 5885 5990 -1818 556 245 170 16 chr9 129155352 129155540 -13115904 + MIR SINE MIR 36 252 -10 2011 113 3 10 chr9 129155627 129155953 -13115491 + AluSx SINE Alu 1 312 0 1069 119 0 0 chr9 129155953 129156104 -13115340 + AluSg/x SINE Alu 134 284 -28 240 86 0 0 chr9 129156104 129156139 -13115305 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2297 63 0 30 chr9 129156181 129156480 -13114964 - AluY SINE Alu -21 290 1 1806 130 14 14 chr9 129156524 129156637 -13114807 + AluSx SINE Alu 23 135 -177 2297 77 13 3 chr9 129156637 129156937 -13114507 + AluY SINE Alu 1 303 -8 1806 130 14 14 chr9 129156937 129157108 -13114336 + AluSx SINE Alu 134 307 -5 276 277 0 0 chr9 129157445 129157510 -13113934 + MIR SINE MIR 53 117 -91 261 0 0 0 chr9 129158002 129158031 -13113413 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1764 145 60 0 chr9 129158150 129158433 -13113011 - AluJb SINE Alu -12 300 1 22 0 0 0 chr9 129158440 129158462 -13112982 + AT_rich Low_complexity Low_complexity 1 22 0 185 229 250 0 chr9 129158930 129158978 -13112466 + MIR SINE MIR 89 148 -60 216 232 18 18 chr9 129159315 129159371 -13112073 + MIR SINE MIR 95 150 -58 401 311 142 5 chr9 129160537 129160727 -13110717 + MIR SINE MIR 41 256 -6 1197 139 124 0 chr9 129161455 129161656 -13109788 + 7SLRNA srpRNA srpRNA 95 320 0 309 26 0 0 chr9 129161800 129161838 -13109606 + (GGA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr9 129163468 129163489 -13107955 + AT_rich Low_complexity Low_complexity 1 21 0 2112 90 62 3 chr9 129163561 129163851 -13107593 + AluSx SINE Alu 1 307 -5 22 0 0 0 chr9 129165777 129165799 -13105645 + GC_rich Low_complexity Low_complexity 1 22 0 279 376 64 0 chr9 129168187 129168360 -13103084 - MIR SINE MIR -70 192 9 233 214 75 0 chr9 129170396 129170467 -13100977 - MIR SINE MIR -63 145 69 1638 158 3 56 chr9 129170506 129170681 -13100763 - AluJb SINE Alu -6 306 154 2358 84 3 0 chr9 129170681 129170980 -13100464 - AluSp SINE Alu -13 300 1 1638 158 3 56 chr9 129170980 129171127 -13100317 - AluJb SINE Alu -158 154 1 2351 91 0 0 chr9 129171137 129171444 -13100000 - AluSx SINE Alu -5 307 1 2099 102 17 0 chr9 129172014 129172308 -13099136 - AluSg SINE Alu -11 299 1 617 222 111 26 chr9 129173031 129173220 -13098224 + MIR SINE MIR 12 216 -46 656 194 0 13 chr9 129173524 129173679 -13097765 + GA-rich Low_complexity Low_complexity 1 153 0 180 364 18 0 chr9 129173681 129173736 -13097708 + L2 LINE L2 3255 3310 -3 283 294 14 7 chr9 129175981 129176124 -13095320 + (CA)n Simple_repeat Simple_repeat 1 144 0 282 29 0 0 chr9 129176385 129176420 -13095024 + (CA)n Simple_repeat Simple_repeat 1 35 0 2205 96 0 0 chr9 129177586 129177877 -13093567 - AluSx SINE Alu -21 291 1 433 237 38 15 chr9 129178293 129178424 -13093020 + L3 LINE CR1 1332 1465 -112 549 300 47 78 chr9 129178493 129178853 -13092591 + L2 LINE L2 2924 3272 0 386 318 40 14 chr9 129179659 129179807 -13091637 - L2 LINE L2 -3 3310 3159 228 250 0 0 chr9 129180057 129180105 -13091339 - L2 LINE L2 0 3313 3266 432 0 0 0 chr9 129180737 129180785 -13090659 + (CA)n Simple_repeat Simple_repeat 2 49 0 1773 157 17 3 chr9 129181055 129181348 -13090096 + AluJo SINE Alu 1 297 -15 207 0 0 0 chr9 129181348 129181371 -13090073 + (GGAGA)n Simple_repeat Simple_repeat 1 23 0 332 282 76 38 chr9 129181382 129181398 -13090046 + L1MC4a LINE L1 5293 5307 -814 2481 69 0 0 chr9 129181398 129181704 -13089740 + AluY SINE Alu 1 306 -5 332 282 76 38 chr9 129181704 129181818 -13089626 + L1MC4a LINE L1 5307 5428 -693 2213 86 4 0 chr9 129181829 129182109 -13089335 + AluSp SINE Alu 1 281 -32 315 0 0 0 chr9 129182109 129182144 -13089300 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 688 310 73 13 chr9 129182175 129182278 -13089166 + L1MC4a LINE L1 5506 5601 -2207 1864 151 0 3 chr9 129182278 129182584 -13088860 + AluJb SINE Alu 1 305 0 688 310 73 13 chr9 129182584 129182782 -13088662 + L1MC4a LINE L1 5601 5826 -1982 2173 88 3 26 chr9 129182784 129183092 -13088352 + AluSx SINE Alu 1 301 -11 229 276 0 17 chr9 129283346 129283404 -12988040 - L2 LINE L2 -1 3271 3215 2472 126 30 35 chr9 129283851 129284286 -12987158 + Tigger2a DNA MER2_type 2 434 0 308 306 38 75 chr9 129284316 129284331 -12987113 + L2 LINE L2 3116 3130 -142 1930 96 104 0 chr9 129284331 129284611 -12986833 - AluSg SINE Alu 0 310 2 308 306 38 75 chr9 129284611 129284755 -12986689 + L2 LINE L2 3130 3269 -3 198 209 0 47 chr9 129285323 129285366 -12986078 - L2 LINE L2 -11 3261 3221 2289 85 0 16 chr9 129286615 129286921 -12984523 - AluSg SINE Alu -9 301 1 21 57 0 0 chr9 129287311 129287346 -12984098 + AT_rich Low_complexity Low_complexity 1 35 0 2196 84 0 0 chr9 129287601 129287874 -12983570 - AluSg SINE Alu -28 282 10 200 89 44 22 chr9 129289126 129289171 -12982273 + (TTA)n Simple_repeat Simple_repeat 1 46 0 470 207 9 27 chr9 129289177 129289288 -12982156 - FRAM SINE Alu -30 146 38 1322 147 22 121 chr9 129289450 129289764 -12981680 + AluJo SINE Alu 1 283 -29 189 0 0 0 chr9 129293339 129293360 -12978084 + (TG)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr9 129293425 129293446 -12977998 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 129294722 129294743 -12976701 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr9 129296291 129296324 -12975120 + AT_rich Low_complexity Low_complexity 1 33 0 42 36 0 0 chr9 129297278 129297334 -12974110 + GC_rich Low_complexity Low_complexity 1 56 0 27 83 0 28 chr9 129297396 129297505 -12973939 + GC_rich Low_complexity Low_complexity 1 106 0 204 176 0 0 chr9 129297958 129297992 -12973452 - L2 LINE L2 -13 3300 3267 227 226 65 0 chr9 129298897 129298959 -12972485 + MER116 DNA Mariner 9 74 -6 2043 123 3 16 chr9 129299453 129299763 -12971681 - AluSx SINE Alu -6 306 1 33 25 0 0 chr9 129299951 129299991 -12971453 + AT_rich Low_complexity Low_complexity 1 40 0 189 0 0 0 chr9 129304682 129304703 -12966741 + (T)n Simple_repeat Simple_repeat 1 21 0 285 218 0 0 chr9 129305954 129306009 -12965435 + FAM SINE Alu 125 179 0 388 255 60 23 chr9 129306098 129306226 -12965218 - MIR3 SINE MIR -21 187 53 930 141 0 0 chr9 129306744 129306996 -12964448 + (TA)n Simple_repeat Simple_repeat 1 252 0 306 0 0 0 chr9 129306995 129307029 -12964415 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 241 255 0 0 chr9 129309067 129309118 -12962326 + L2 LINE L2 3216 3266 -6 230 54 0 27 chr9 129309274 129309311 -12962133 + (CAA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr9 129310442 129310463 -12960981 + AT_rich Low_complexity Low_complexity 1 21 0 848 228 59 39 chr9 129311358 129311612 -12959832 + MIR SINE MIR 4 262 0 350 286 236 6 chr9 129315061 129315243 -12956201 - MIR SINE MIR -28 234 11 558 282 68 56 chr9 129315318 129315552 -12955892 + MIR SINE MIR 9 245 -17 24 0 0 0 chr9 129322625 129322649 -12948795 + AT_rich Low_complexity Low_complexity 1 24 0 183 186 0 0 chr9 129323176 129323219 -12948225 + CT-rich Low_complexity Low_complexity 1 43 0 460 234 70 25 chr9 129324105 129324263 -12947181 - MER104 DNA Tc2 -12 168 4 341 253 54 81 chr9 129324412 129324436 -12947008 - L1MC5 LINE L1 -61 7900 7877 366 158 26 13 chr9 129324436 129324512 -12946932 - MER116 DNA Mariner 0 80 4 341 253 54 81 chr9 129324512 129324673 -12946771 - L1MC5 LINE L1 -84 7877 7720 2081 164 29 37 chr9 129324749 129325205 -12946239 - L1MC1 LINE L1 -1 6332 5881 508 263 8 0 chr9 129326489 129326607 -12944837 - MIR SINE MIR -96 166 48 1805 103 69 62 chr9 129326758 129327049 -12944395 - AluSg1 SINE Alu -16 293 1 22 35 0 0 chr9 129328825 129328854 -12942590 + AT_rich Low_complexity Low_complexity 1 29 0 355 274 9 9 chr9 129329015 129329121 -12942323 - MIR SINE MIR 0 262 157 5059 190 57 16 chr9 129330959 129331108 -12940336 - Charlie1 DNA MER1_type 0 2761 2620 1869 155 7 7 chr9 129331108 129331405 -12940039 - AluJo SINE Alu -15 297 1 1709 189 0 17 chr9 129331407 129331709 -12939735 - AluJo SINE Alu -15 297 1 5059 190 57 16 chr9 129331709 129332740 -12938704 - Charlie1 DNA MER1_type -141 2620 1529 857 158 46 0 chr9 129332822 129332974 -12938470 + MER33 DNA MER1_type 1 159 -165 1280 124 51 14 chr9 129332988 129333205 -12938239 - AluJb SINE Alu 0 312 88 609 110 29 37 chr9 129333209 129333345 -12938099 + MER33 DNA MER1_type 224 358 -5 314 277 47 20 chr9 129333361 129333509 -12937935 - MER103 DNA DNA 0 166 15 206 237 0 88 chr9 129333590 129333660 -12937784 - MIR SINE MIR -49 159 96 2083 130 7 0 chr9 129333777 129334061 -12937383 + AluSx SINE Alu 1 286 -26 2203 89 0 11 chr9 129334087 129334368 -12937076 + AluSq SINE Alu 14 291 -22 1525 177 0 70 chr9 129335296 129335438 -12936006 + AluJo SINE Alu 1 113 -199 2076 122 3 34 chr9 129335438 129335758 -12935686 + AluSx SINE Alu 1 310 -2 1525 177 0 70 chr9 129335758 129335914 -12935530 + AluJo SINE Alu 113 278 -34 300 70 0 0 chr9 129335932 129335975 -12935469 + (TG)n Simple_repeat Simple_repeat 2 44 0 2406 56 0 26 chr9 129335999 129336304 -12935140 - AluY SINE Alu -14 297 1 228 317 67 29 chr9 129336730 129336834 -12934610 + L2 LINE L2 3162 3269 -3 183 321 107 24 chr9 129338250 129338418 -12933026 + L2 LINE L2 2576 2757 -557 226 310 69 14 chr9 129338521 129338666 -12932778 - L1ME4a LINE L1 -2 6119 5967 1562 135 56 16 chr9 129338876 129339128 -12932316 - AluJb SINE Alu -50 262 1 520 214 37 121 chr9 129339185 129339400 -12932044 - L2 LINE L2 -57 3256 3060 311 263 20 30 chr9 129339606 129339705 -12931739 - L1ME4a LINE L1 -457 5664 5567 501 291 24 12 chr9 129341306 129341471 -12929973 - Charlie8 DNA MER1_type -2138 279 113 209 281 34 11 chr9 129341700 129341789 -12929655 + L2 LINE L2 2461 2551 -763 665 328 154 13 chr9 129342401 129342849 -12928595 + L2 LINE L2 2461 2971 -343 24 32 0 0 chr9 129343835 129343866 -12927578 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr9 129345036 129345074 -12926370 + AT_rich Low_complexity Low_complexity 1 38 0 1978 146 7 7 chr9 129345343 129345644 -12925800 - AluJb SINE Alu -11 301 1 304 321 18 9 chr9 129345861 129345970 -12925474 + L1ME2 LINE L1 5032 5141 -1005 1186 230 209 42 chr9 129346012 129346659 -12924785 + L1MC4 LINE L1 7160 7914 -128 186 43 0 0 chr9 129346779 129346802 -12924642 + (CA)n Simple_repeat Simple_repeat 2 24 0 292 215 132 50 chr9 129346809 129346930 -12924514 + L1MC4 LINE L1 7911 8041 -1 1231 260 102 28 chr9 129346938 129347621 -12923823 + L1ME2 LINE L1 5191 5945 -217 2059 91 84 7 chr9 129347700 129347985 -12923459 + AluSp SINE Alu 1 307 -6 373 276 9 38 chr9 129348170 129348275 -12923169 - L2 LINE L2 -1 3312 3211 1353 250 115 33 chr9 129348275 129348755 -12922689 + L1ME3A LINE L1 5647 6165 -5 1048 223 273 11 chr9 129348764 129349387 -12922057 - L2 LINE L2 -78 3235 2472 381 223 71 29 chr9 129349873 129349996 -12921448 - MIR SINE MIR -40 168 41 2019 104 50 3 chr9 129350861 129351159 -12920285 + AluSx SINE Alu 1 312 0 845 191 248 84 chr9 129351414 129351854 -12919590 - LTR33 LTR ERVL 0 521 10 186 263 0 0 chr9 129352155 129352193 -12919251 - MIR SINE MIR -9 253 216 * 353 332 124 80 chr9 129352162 129352548 -12918896 - L2 LINE L2 -22 3250 2848 716 232 23 77 chr9 129352566 129352717 -12918727 + MIR SINE MIR 18 151 -111 2153 129 0 3 chr9 129352717 129353019 -12918425 + AluSx SINE Alu 1 301 -11 716 232 23 77 chr9 129353019 129353126 -12918318 + MIR SINE MIR 151 262 0 443 330 71 42 chr9 129353195 129353434 -12918010 + L2 LINE L2 2992 3237 -35 387 362 92 7 chr9 129353440 129353711 -12917733 - L2 LINE L2 -880 2434 2141 186 71 0 0 chr9 129354072 129354100 -12917344 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 659 298 83 29 chr9 129354170 129355052 -12916392 + L1MEc LINE L1 857 1816 -4580 393 264 92 70 chr9 129355056 129355799 -12915645 + L1MEc LINE L1 1855 2676 -3539 745 209 70 29 chr9 129355799 129355971 -12915473 - MER5A DNA MER1_type 0 189 11 1418 187 54 54 chr9 129355975 129356398 -12915046 + L1MEc LINE L1 2662 3084 -3131 236 268 37 0 chr9 129356434 129356516 -12914928 + L1MC4 LINE L1 6615 6699 -1343 * 252 279 243 0 chr9 129356503 129356614 -12914830 + L1MC/D LINE L1 5597 5734 -2074 1421 161 28 0 chr9 129356615 129356833 -12914611 - AluJb SINE Alu -84 228 5 503 274 103 16 chr9 129356929 129357120 -12914324 + MIR SINE MIR 58 261 -1 2244 109 0 10 chr9 129358425 129358727 -12912717 - AluSx SINE Alu -13 299 1 456 245 196 0 chr9 129358964 129359107 -12912337 + MIR SINE MIR 80 250 -12 685 311 31 4 chr9 129359529 129359754 -12911690 - MIR SINE MIR -6 256 26 202 286 100 0 chr9 129360621 129360691 -12910753 + L2 LINE L2 3231 3307 -6 256 245 78 110 chr9 129360740 129361112 -12910332 - L1ME4a LINE L1 -3 6118 5759 1746 151 23 0 chr9 129361176 129361435 -12910009 + AluJb SINE Alu 31 295 -17 306 242 323 0 chr9 129361440 129361564 -12909880 - L1ME4a LINE L1 -413 5708 5545 651 292 84 25 chr9 129361807 129362129 -12909315 + Charlie2 DNA MER1_type 1 341 -2521 1421 191 118 69 chr9 129362156 129362474 -12908970 + Charlie2 DNA MER1_type 2243 2544 -318 2368 91 0 10 chr9 129362474 129362782 -12908662 - AluSc SINE Alu -4 305 1 1421 191 118 69 chr9 129362782 129363054 -12908390 + Charlie2 DNA MER1_type 2544 2862 0 421 326 64 43 chr9 129363609 129363891 -12907553 + L2 LINE L2 3011 3298 -15 519 262 66 55 chr9 129364076 129364259 -12907185 - MIR SINE MIR -75 187 3 415 323 76 5 chr9 129366410 129366608 -12904836 + L3 LINE CR1 1292 1503 -74 359 293 113 0 chr9 129366708 129366814 -12904630 - L2 LINE L2 -1070 2244 2127 180 125 0 0 chr9 129366825 129366857 -12904587 + (TC)n Simple_repeat Simple_repeat 1 32 0 240 341 74 15 chr9 129366875 129367010 -12904434 - L2 LINE L2 -1257 2057 1915 266 185 31 0 chr9 129369762 129369827 -12901617 + T-rich Low_complexity Low_complexity 2 68 0 374 239 39 39 chr9 129375560 129375690 -12895754 - MIR SINE MIR -57 151 22 1390 157 14 0 chr9 129375761 129375978 -12895466 - AluJo SINE Alu -83 229 10 824 176 0 0 chr9 129376011 129376142 -12895302 - FLAM_C SINE Alu -1 132 2 219 282 113 24 chr9 129376984 129377108 -12894336 - MIR SINE MIR -22 240 106 227 349 19 28 chr9 129377203 129377309 -12894135 - L2 LINE L2 -2 3270 3166 233 348 74 0 chr9 129377825 129377960 -12893484 - MIR SINE MIR -29 233 89 489 34 0 0 chr9 129378164 129378223 -12893221 + (TG)n Simple_repeat Simple_repeat 1 59 0 288 185 19 0 chr9 129378395 129378449 -12892995 + MIR SINE MIR 29 83 -179 2318 109 10 3 chr9 129378679 129378990 -12892454 - AluSq SINE Alu 0 313 1 331 220 0 0 chr9 129378996 129379055 -12892389 + MIR SINE MIR 49 107 -155 282 304 0 0 chr9 129379367 129379436 -12892008 - MIR SINE MIR -77 185 117 2115 117 0 36 chr9 129379493 129379801 -12891643 - AluSq SINE Alu -16 297 1 632 306 75 0 chr9 129380269 129380468 -12890976 + MIR SINE MIR 2 215 -47 548 272 0 7 chr9 129380658 129380794 -12890650 + MIR SINE MIR 60 194 -68 295 264 81 0 chr9 129381869 129381956 -12889488 - L2 LINE L2 -10 3303 3210 1495 170 4 0 chr9 129382192 129382422 -12889022 + AluJb SINE Alu 1 231 -81 334 257 112 24 chr9 129382556 129382707 -12888737 - MIR SINE MIR -63 145 19 552 301 74 17 chr9 129382921 129383220 -12888224 - L1ME LINE L1 -527 5637 5322 1897 137 0 49 chr9 129383220 129383262 -12888182 - AluSx SINE Alu 0 312 269 189 107 0 0 chr9 129383262 129383290 -12888154 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1897 137 0 49 chr9 129383290 129383575 -12887869 - AluSx SINE Alu -43 269 1 2081 134 0 0 chr9 129383632 129383943 -12887501 + AluSx SINE Alu 1 311 0 1205 284 98 18 chr9 129383972 129384462 -12886982 - L1ME LINE L1 -1162 4984 4456 620 185 0 25 chr9 129384690 129384852 -12886592 + CT-rich Low_complexity Low_complexity 2 159 0 7270 197 41 18 chr9 129384873 129385832 -12885612 - L1MC1 LINE L1 -6 6607 5672 1920 152 0 10 chr9 129385832 129386135 -12885309 - AluJb SINE Alu -12 300 1 7270 197 41 18 chr9 129386135 129387120 -12884324 - L1MC1 LINE L1 -941 5672 4711 247 59 20 39 chr9 129387120 129387171 -12884273 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1764 30 0 0 chr9 129387171 129387374 -12884070 - L1PA4 LINE L1 -13 6142 5940 7270 197 41 18 chr9 129387374 129388387 -12883057 - L1MC1 LINE L1 -1901 4712 3578 938 129 7 0 chr9 129388387 129388527 -12882917 - THE1C LTR MaLR -234 141 1 2538 187 10 16 chr9 129388528 129388556 -12882888 - L1MC1 LINE L1 -5917 509 482 2277 126 0 0 chr9 129388556 129388866 -12882578 + AluSg SINE Alu 1 310 0 2538 187 10 16 chr9 129388866 129389345 -12882099 - L1MC1 LINE L1 -5944 482 5 223 185 0 56 chr9 129389354 129389408 -12882036 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 371 339 52 41 chr9 129389411 129389469 -12881975 - L1MC4a LINE L1 -1899 5909 5853 2362 99 0 7 chr9 129389469 129389771 -12881673 - AluSx SINE Alu -12 300 1 371 339 52 41 chr9 129389771 129390007 -12881437 - L1MC4a LINE L1 -1955 5853 5608 2203 136 27 29 chr9 129390007 129390383 -12881061 + THE1C LTR MaLR 1 375 0 371 339 52 41 chr9 129390383 129390450 -12880994 - L1MC4a LINE L1 -2200 5608 5543 233 254 203 17 chr9 129390800 129390918 -12880526 - MIR SINE MIR -62 146 6 200 215 63 25 chr9 129390859 129390938 -12880506 + MIR SINE MIR 45 126 -82 * 259 239 174 0 chr9 129391311 129391403 -12880041 + MIR SINE MIR 85 192 -70 2155 101 38 0 chr9 129392093 129392381 -12879063 + AluSx SINE Alu 1 299 -13 770 200 4 0 chr9 129392566 129392850 -12878594 + (CCA)n Simple_repeat Simple_repeat 1 285 0 * 878 182 7 27 chr9 129392812 129393256 -12878188 + (CACCAT)n Simple_repeat Simple_repeat 1 435 0 239 292 0 0 chr9 129393264 129393336 -12878108 + (CAT)n Simple_repeat Simple_repeat 3 74 0 731 242 0 0 chr9 129393603 129393760 -12877684 - MLT1-int LTR MaLR -1208 163 7 445 208 108 31 chr9 129393945 129394075 -12877369 + MIR SINE MIR 23 162 -100 341 207 240 8 chr9 129394575 129394615 -12876829 - MER5B DNA MER1_type -3 175 146 2222 122 0 0 chr9 129394615 129394910 -12876534 - AluSq SINE Alu -18 295 1 341 207 240 8 chr9 129394910 129394990 -12876454 - MER5B DNA MER1_type -32 146 27 212 308 64 0 chr9 129396191 129396269 -12875175 - MIR SINE MIR -1 261 179 792 252 128 18 chr9 129396282 129396762 -12874682 + L2 LINE L2 2782 3312 -1 310 264 11 0 chr9 129396765 129396852 -12874592 - MIR SINE MIR -119 143 56 216 314 128 34 chr9 129397199 129397403 -12874041 + MIR SINE MIR 27 249 -13 231 263 134 47 chr9 129398509 129398741 -12872703 + L2 LINE L2 2510 2761 -553 426 212 225 40 chr9 129398894 129399045 -12872399 + L2 LINE L2 3121 3299 -14 1305 166 23 143 chr9 129399046 129399395 -12872049 - AluYb8 SINE Alu -1 307 1 334 245 176 0 chr9 129399613 129399715 -12871729 + MIR SINE MIR 35 154 -108 229 143 0 0 chr9 129399720 129399755 -12871689 - MIR SINE MIR -7 255 221 200 208 0 19 chr9 129400079 129400132 -12871312 + C-rich Low_complexity Low_complexity 3 54 0 449 261 64 0 chr9 129400460 129400632 -12870812 + MIR3 SINE MIR 3 184 -62 2278 109 26 0 chr9 129400854 129401156 -12870288 - AluSx SINE Alu -2 310 1 322 311 0 0 chr9 129401158 129401248 -12870196 - MIR SINE MIR -99 163 74 2272 91 0 27 chr9 129404119 129404417 -12867027 - AluSx SINE Alu -22 290 1 1872 153 28 0 chr9 129404419 129404707 -12866737 - AluJo SINE Alu -16 296 1 327 250 88 73 chr9 129405745 129405881 -12865563 + MIR SINE MIR 103 240 -22 1490 115 35 184 chr9 129406169 129406517 -12864927 + AluJb SINE Alu 1 296 -16 28 61 0 0 chr9 129407007 129407056 -12864388 + AT_rich Low_complexity Low_complexity 1 49 0 273 289 112 48 chr9 129407381 129407568 -12863876 - MIR SINE MIR -28 234 36 434 168 60 132 chr9 129407670 129407747 -12863697 - MIR SINE MIR -54 208 148 2290 114 0 0 chr9 129407747 129408044 -12863400 + AluSx SINE Alu 5 301 -11 434 168 60 132 chr9 129408044 129408133 -12863311 - MIR SINE MIR -114 148 54 188 293 78 93 chr9 129408507 129408712 -12862732 - L2 LINE L2 -213 3059 2858 513 274 0 14 chr9 129409028 129409174 -12862270 - MIR SINE MIR -31 231 88 215 316 112 20 chr9 129409836 129409934 -12861510 + MIR SINE MIR 14 120 -142 214 143 0 0 chr9 129410518 129410553 -12860891 + L2 LINE L2 3224 3258 -14 451 208 42 0 chr9 129411138 129411234 -12860210 + MIR SINE MIR 77 176 -86 561 279 28 96 chr9 129411400 129411723 -12859721 - L2 LINE L2 -61 3211 2911 934 143 0 0 chr9 129411821 129411954 -12859490 - FLAM_C SINE Alu 0 133 1 186 318 129 30 chr9 129412795 129412927 -12858517 - MIR SINE MIR -25 237 93 336 346 22 0 chr9 129412971 129413107 -12858337 - HERVL LTR ERVL -850 4804 4666 336 333 0 0 chr9 129413213 129413306 -12858138 - HERVL LTR ERVL -1214 4271 4179 1351 120 56 0 chr9 129413366 129413582 -12857862 - AluSg/x SINE Alu -2 308 81 1066 288 78 69 chr9 129413598 129413821 -12857623 - HERVL LTR ERVL -2779 2217 1998 1934 112 51 7 chr9 129413821 129414115 -12857329 - AluSg SINE Alu -1 309 3 1066 288 78 69 chr9 129414115 129414440 -12857004 - HERVL LTR ERVL -2998 1998 1664 663 336 73 8 chr9 129414498 129414870 -12856574 - HERVL LTR ERVL -3493 1503 1108 370 250 121 9 chr9 129415069 129415185 -12856259 - HERVL LTR ERVL -4135 861 733 1155 367 24 8 chr9 129415223 129415820 -12855624 - HERVL LTR ERVL -4352 644 39 1265 193 183 28 chr9 129415887 129415941 -12855503 - LTR16A1 LTR ERVL -3 454 410 2012 143 153 8 chr9 129415941 129416313 -12855131 + MSTA LTR MaLR 1 426 -2 1265 193 183 28 chr9 129416313 129416651 -12854793 - LTR16A1 LTR ERVL -47 410 1 1310 137 4 26 chr9 129417291 129417327 -12854117 - L1MD3 LINE L1 -130 7865 7830 2078 133 64 25 chr9 129417327 129417688 -12853756 - THE1C LTR MaLR 0 375 1 1310 137 4 26 chr9 129417688 129417878 -12853566 - L1MD3 LINE L1 -165 7830 7644 2245 118 137 11 chr9 129418256 129418636 -12852808 + MSTA LTR MaLR 1 428 0 293 286 0 0 chr9 129418843 129418920 -12852524 + MIR SINE MIR 63 139 -123 549 317 96 19 chr9 129418972 129419284 -12852160 + MLT1I LTR MaLR 71 406 -3 405 0 0 0 chr9 129420203 129420248 -12851196 + (TG)n Simple_repeat Simple_repeat 2 46 0 185 105 0 26 chr9 129420253 129420291 -12851153 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1379 154 18 0 chr9 129420322 129420543 -12850901 - AluJo SINE Alu -85 227 3 278 206 176 0 chr9 129420899 129420967 -12850477 + L2 LINE L2 3233 3312 -1 384 253 11 68 chr9 129421081 129421271 -12850173 + (TGAA)n Simple_repeat Simple_repeat 1 179 0 384 253 11 68 chr9 129421309 129421499 -12849945 + (TGAA)n Simple_repeat Simple_repeat 1 179 0 386 253 17 64 chr9 129421522 129421901 -12849543 + (TGAA)n Simple_repeat Simple_repeat 1 361 0 364 266 0 78 chr9 129421936 129422190 -12849254 + (TGAG)n Simple_repeat Simple_repeat 1 234 0 325 358 17 8 chr9 129422190 129422310 -12849134 - L3 LINE CR1 -503 1074 954 2045 192 88 0 chr9 129423591 129424012 -12847432 + LTR32 LTR ERVL 14 471 0 310 311 203 16 chr9 129425176 129425491 -12845953 - L2 LINE L2 -623 2691 2318 1898 139 7 7 chr9 129425969 129426270 -12845174 - AluSx SINE Alu -11 301 1 1126 158 54 0 chr9 129426287 129426490 -12844954 - MER20 DNA MER1_type 0 219 6 726 285 126 45 chr9 129426623 129426744 -12844700 + L1ME3A LINE L1 5660 5770 -400 2177 104 3 0 chr9 129426744 129427043 -12844401 + AluSx SINE Alu 1 300 -12 726 285 126 45 chr9 129427043 129427388 -12844056 + L1ME3A LINE L1 5770 6164 -6 2043 134 0 3 chr9 129427416 129427721 -12843723 + AluJb SINE Alu 1 304 -8 338 306 41 12 chr9 129427744 129427914 -12843530 - Tigger8 DNA MER2_type -56 610 436 2088 99 19 26 chr9 129428352 129428665 -12842779 - AluSx SINE Alu 0 312 2 184 282 245 5 chr9 129428670 129428858 -12842586 + L2 LINE L2 1647 1879 -1435 366 237 189 18 chr9 129428877 129429046 -12842398 + L2 LINE L2 2503 2700 -614 2091 116 6 16 chr9 129429079 129429390 -12842054 - AluSx SINE Alu -4 308 1 196 246 140 35 chr9 129429694 129429808 -12841636 + L2 LINE L2 3111 3236 -77 522 208 39 8 chr9 129429846 129429976 -12841468 + MIR SINE MIR 30 163 -99 379 271 131 0 chr9 129430174 129430296 -12841148 - MIR SINE MIR -78 184 47 2021 124 3 0 chr9 129430486 129430777 -12840667 + AluSx SINE Alu 11 302 -10 393 304 59 91 chr9 129430830 129431116 -12840328 + L3 LINE CR1 582 858 -719 297 328 69 37 chr9 129431164 129431353 -12840091 + L3 LINE CR1 426 620 -957 213 178 0 0 chr9 129431706 129431751 -12839693 + (CATG)n Simple_repeat Simple_repeat 2 46 0 414 241 37 0 chr9 129431769 129431931 -12839513 + (CATG)n Simple_repeat Simple_repeat 4 171 0 562 229 11 17 chr9 129431960 129432139 -12839305 + (CATG)n Simple_repeat Simple_repeat 1 178 0 192 254 0 0 chr9 129432153 129432212 -12839232 + (CGTG)n Simple_repeat Simple_repeat 4 62 0 261 320 0 0 chr9 129433321 129433396 -12838048 + L2 LINE L2 3235 3309 -4 2248 99 0 0 chr9 129433490 129433794 -12837650 - AluY SINE Alu -7 304 1 320 254 0 0 chr9 129433942 129434013 -12837431 + MIR SINE MIR 54 124 -138 232 174 116 0 chr9 129434459 129434513 -12836931 - MER96B DNA MER1_type? -275 142 96 2176 83 21 0 chr9 129434513 129434803 -12836641 + AluSx SINE Alu 5 300 -12 232 174 116 0 chr9 129434803 129434834 -12836610 - MER96B DNA MER1_type? -321 96 47 272 209 6 121 chr9 129436127 129436230 -12835214 - MLT1H LTR MaLR 0 549 474 1283 120 0 0 chr9 129436234 129436409 -12835035 - AluSg/x SINE Alu -4 306 132 2063 108 3 35 chr9 129436409 129436724 -12834720 - AluSq SINE Alu -8 305 1 721 277 49 58 chr9 129436726 129437073 -12834371 - MLT1H LTR MaLR -205 344 1 503 253 37 31 chr9 129437073 129437235 -12834209 - MIR SINE MIR -99 163 1 2251 96 3 0 chr9 129437361 129437662 -12833782 - AluSx SINE Alu -10 302 1 327 161 0 25 chr9 129438122 129438203 -12833241 - L1ME4a LINE L1 0 6121 6043 483 228 110 21 chr9 129439864 129439980 -12831464 + MER103 DNA DNA 2 135 -31 2700 92 20 0 chr9 129439980 129440337 -12831107 - THE1B LTR MaLR 0 364 1 483 228 110 21 chr9 129440337 129440365 -12831079 + MER103 DNA DNA 135 159 -7 303 174 29 14 chr9 129440488 129440557 -12830887 - MIR SINE MIR -112 150 81 2172 96 7 3 chr9 129440637 129440940 -12830504 - AluSq SINE Alu -9 304 1 206 254 0 16 chr9 129441470 129441533 -12829911 + GA-rich Low_complexity Low_complexity 2 63 0 964 271 122 44 chr9 129442040 129442098 -12829346 - LTR33 LTR ERVL -5 516 464 1772 154 7 17 chr9 129442098 129442390 -12829054 - AluJb SINE Alu -22 290 2 964 271 122 44 chr9 129442390 129442807 -12828637 - LTR33 LTR ERVL -57 464 4 2317 86 7 0 chr9 129443431 129443735 -12827709 + AluSx SINE Alu 1 306 -6 492 92 53 0 chr9 129443737 129443813 -12827631 + MADE1 DNA Mariner 1 80 0 610 269 12 0 chr9 129443849 129444016 -12827428 - MIR SINE MIR -22 240 72 2167 104 7 3 chr9 129444152 129444451 -12826993 + AluSx SINE Alu 1 300 -12 186 167 0 0 chr9 129444551 129444581 -12826863 - MIR SINE MIR -114 148 119 369 308 38 44 chr9 129445655 129445814 -12825630 - MIR SINE MIR -77 185 28 1795 158 20 10 chr9 129446020 129446323 -12825121 + AluJb SINE Alu 5 310 -2 823 118 0 0 chr9 129446323 129446442 -12825002 + AluJb SINE Alu 1 119 -193 216 0 0 0 chr9 129446443 129446467 -12824977 + (TAA)n Simple_repeat Simple_repeat 1 24 0 244 323 40 20 chr9 129446739 129446838 -12824606 + MIR SINE MIR 63 163 -99 527 236 9 0 chr9 129446855 129446965 -12824479 - MER81 DNA DNA -1 113 3 336 238 24 0 chr9 129448010 129448094 -12823350 - MIR SINE MIR -67 195 110 1875 271 65 59 chr9 129448370 129449149 -12822295 - L1ME3 LINE L1 -29 6133 5347 1903 191 46 14 chr9 129449149 129449499 -12821945 + MLT1A1 LTR MaLR 5 365 0 1875 271 65 59 chr9 129449499 129449572 -12821872 - L1ME3 LINE L1 -815 5347 5276 379 243 0 0 chr9 129449584 129449658 -12821786 - L1ME3 LINE L1 -933 5213 5140 278 330 21 0 chr9 129449672 129449766 -12821678 + MER117 DNA MER1_type 101 196 -1 2513 161 40 11 chr9 129449821 129450292 -12821152 - L1MB7 LINE L1 0 6184 5700 4287 210 24 62 chr9 129450300 129450901 -12820543 - L1MB7 LINE L1 -1281 4865 4335 180 0 0 0 chr9 129450901 129450921 -12820523 + (TG)n Simple_repeat Simple_repeat 2 21 0 4287 210 24 62 chr9 129450921 129451572 -12819872 - L1MB7 LINE L1 -1811 4335 3661 1474 309 35 22 chr9 129451607 129452157 -12819287 - Tigger8 DNA MER2_type -78 588 32 313 291 19 10 chr9 129453123 129453226 -12818218 - MIR SINE MIR 0 262 159 896 122 11 88 chr9 129453226 129453294 -12818150 - MLT1H LTR MaLR 0 549 477 2430 78 0 0 chr9 129453294 129453602 -12817842 + AluY SINE Alu 1 308 -3 896 122 11 88 chr9 129453602 129453714 -12817730 - MLT1H LTR MaLR -72 477 383 1422 199 40 1 chr9 129453764 129454217 -12817227 - LTR53 LTR ERVL -2 517 1 211 175 0 0 chr9 129454303 129454343 -12817101 - L2 LINE L2 -3 3310 3271 184 191 11 53 chr9 129454481 129454575 -12816869 + CT-rich Low_complexity Low_complexity 3 92 0 250 241 0 0 chr9 129455284 129455338 -12816106 + (TG)n Simple_repeat Simple_repeat 1 54 0 6422 105 38 13 chr9 129456363 129457521 -12813923 - HERVH LTR ERV1 -6166 1547 422 5340 85 1 3 chr9 129457623 129458379 -12813065 - HERVH LTR ERV1 -3819 3894 3140 * 5675 94 4 8 chr9 129458373 129459217 -12812227 - HERVH LTR ERV1 -4726 2987 2148 305 275 46 28 chr9 129459318 129459427 -12812017 + MIR SINE MIR 120 230 -32 195 218 0 51 chr9 129460788 129460847 -12810597 - MIR SINE MIR -51 157 103 236 179 107 0 chr9 129461369 129461425 -12810019 + MIR SINE MIR 83 144 -118 1862 139 3 26 chr9 129461629 129461938 -12809506 + AluJo SINE Alu 1 302 -10 660 184 31 112 chr9 129462531 129462727 -12808717 + MIR SINE MIR 50 229 -33 766 218 15 78 chr9 129463566 129463772 -12807672 - MER63A DNA MER1_type -16 194 2 189 345 12 12 chr9 129464078 129464162 -12807282 + MIR SINE MIR 62 145 -63 525 325 6 0 chr9 129464211 129464371 -12807073 - MIR SINE MIR -51 211 51 285 287 60 47 chr9 129464441 129464591 -12806853 + L2 LINE L2 3090 3241 -31 483 303 26 56 chr9 129465031 129465298 -12806146 + MIR SINE MIR 4 262 0 305 169 183 0 chr9 129465567 129465638 -12805806 + MIR SINE MIR 81 164 -98 1190 172 0 73 chr9 129466427 129466688 -12804756 + AluJo SINE Alu 54 295 -17 772 251 200 22 chr9 129466737 129467107 -12804337 - L2 LINE L2 -1 3312 2877 315 130 0 0 chr9 129467591 129467645 -12803799 + (A)n Simple_repeat Simple_repeat 1 54 0 25 0 0 0 chr9 129467932 129467957 -12803487 + AT_rich Low_complexity Low_complexity 1 25 0 212 86 29 0 chr9 129468879 129468914 -12802530 + (TC)n Simple_repeat Simple_repeat 1 36 0 189 196 0 0 chr9 129469075 129469121 -12802323 + CT-rich Low_complexity Low_complexity 2 47 0 321 341 66 12 chr9 129469837 129470004 -12801440 + MIR SINE MIR 35 210 -52 330 26 0 0 chr9 129470736 129470775 -12800669 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2106 89 3 3 chr9 129470777 129471059 -12800385 - AluSg SINE Alu -28 282 1 415 308 41 0 chr9 129472233 129472402 -12799042 + MIR SINE MIR 81 256 -6 235 344 44 0 chr9 129472426 129472516 -12798928 - MIR SINE MIR -61 201 108 272 286 0 0 chr9 129472636 129472713 -12798731 + (TGAA)n Simple_repeat Simple_repeat 1 77 0 207 318 135 14 chr9 129472756 129472904 -12798540 - L2 LINE L2 -32 3240 3075 213 167 0 0 chr9 129473216 129473252 -12798192 - MIR SINE MIR -116 146 111 370 241 78 13 chr9 129473555 129473676 -12797768 + MLT1F LTR MaLR 281 409 0 548 266 41 30 chr9 129474107 129474276 -12797168 + MIR SINE MIR 20 190 -72 2170 108 0 0 chr9 129474284 129474581 -12796863 + AluSx SINE Alu 1 297 -15 266 258 79 0 chr9 129475391 129475480 -12795964 - MIR SINE MIR -59 203 108 396 149 25 25 chr9 129475914 129476035 -12795409 + CT-rich Low_complexity Low_complexity 3 123 0 381 271 0 0 chr9 129476107 129476262 -12795182 + (TTCA)n Simple_repeat Simple_repeat 3 157 0 227 224 190 60 chr9 129476306 129476422 -12795022 - L2 LINE L2 0 3272 3142 459 353 6 12 chr9 129476880 129477047 -12794397 - MIR SINE MIR -76 186 21 549 246 31 0 chr9 129477067 129477197 -12794247 + MIR SINE MIR 14 147 -115 380 256 74 62 chr9 129477693 129477869 -12793575 - MIR SINE MIR -57 205 28 255 61 0 0 chr9 129478458 129478491 -12792953 + (TCCCC)n Simple_repeat Simple_repeat 2 34 0 2175 115 0 3 chr9 129478498 129478928 -12792516 - AluSx SINE Alu 0 429 1 658 288 35 15 chr9 129478980 129479216 -12792228 - MIR SINE MIR -3 259 15 269 223 223 11 chr9 129479444 129479538 -12791906 + MIR3 SINE MIR 3 116 -92 258 239 34 45 chr9 129479637 129479725 -12791719 + MIR SINE MIR 176 262 0 374 362 40 35 chr9 129479730 129479929 -12791515 + L1ME4a LINE L1 5922 6121 0 301 301 0 29 chr9 129480936 129481039 -12790405 + (CCTG)n Simple_repeat Simple_repeat 1 100 0 634 347 28 8 chr9 129482245 129482493 -12788951 - MIR SINE MIR -8 254 2 2174 191 33 77 chr9 129482657 129482683 -12788761 - L1MB7 LINE L1 -32 6152 6126 2248 92 0 3 chr9 129482683 129482987 -12788457 + AluSx SINE Alu 1 303 -9 2174 191 33 77 chr9 129482987 129483572 -12787872 - L1MB7 LINE L1 -58 6126 5568 363 348 95 5 chr9 129483723 129483933 -12787511 - MIR SINE MIR -32 230 2 289 267 133 9 chr9 129484152 129484257 -12787187 - MIR SINE MIR -113 149 32 414 0 0 0 chr9 129484266 129484312 -12787132 + (TG)n Simple_repeat Simple_repeat 2 47 0 2845 60 126 0 chr9 129484869 129485267 -12786177 - LTR7 LTR ERV1 -2 448 1 2309 93 48 13 chr9 129485267 129485644 -12785800 - HERVH LTR ERV1 0 7713 7324 1350 134 19 0 chr9 129485644 129485860 -12785584 - HERVH LTR ERV1 -1894 5819 5600 4394 134 0 3 chr9 129485861 129486525 -12784919 - HERVH LTR ERV1 -2564 5149 4488 2438 73 0 3 chr9 129486676 129487004 -12784440 - HERVH LTR ERV1 -7386 327 1 2745 68 131 2 chr9 129487006 129487403 -12784041 - LTR7 LTR ERV1 -2 448 1 375 229 0 0 chr9 129487567 129487650 -12783794 + MIR SINE MIR 103 185 -77 826 241 21 29 chr9 129487973 129488214 -12783230 - MIR SINE MIR -22 240 2 191 356 11 22 chr9 129489213 129489303 -12782141 - L2 LINE L2 0 3313 3225 620 288 40 0 chr9 129489326 129489524 -12781920 + MIR SINE MIR 49 254 -8 555 88 0 0 chr9 129489970 129490061 -12781383 + (TG)n Simple_repeat Simple_repeat 2 92 0 602 244 110 0 chr9 129490318 129490482 -12780962 - MIR SINE MIR -65 197 16 195 188 0 0 chr9 129490656 129490704 -12780740 + T-rich Low_complexity Low_complexity 1 48 0 225 108 0 0 chr9 129491555 129491592 -12779852 + (GA)n Simple_repeat Simple_repeat 1 37 0 891 311 126 14 chr9 129492541 129493185 -12778259 - L2 LINE L2 -704 2610 1895 753 257 90 25 chr9 129494086 129494331 -12777113 - MIR SINE MIR -1 261 1 1898 161 71 32 chr9 129494358 129494737 -12776707 - MSTD LTR MaLR 0 396 3 310 353 155 10 chr9 129495371 129495578 -12775866 + MIR SINE MIR 26 262 0 1543 228 91 27 chr9 129496022 129496420 -12775024 - MLT1C LTR MaLR -1 466 36 1826 145 7 23 chr9 129496420 129496724 -12774720 - AluSx SINE Alu -13 299 1 1543 228 91 27 chr9 129496724 129496763 -12774681 - MLT1C LTR MaLR -431 36 1 218 362 0 0 chr9 129497147 129497216 -12774228 - L2 LINE L2 0 3313 3245 1721 172 0 13 chr9 129497293 129497595 -12773849 + AluJb SINE Alu 1 298 -14 354 91 0 0 chr9 129498485 129498540 -12772904 + (TG)n Simple_repeat Simple_repeat 2 56 0 231 270 75 13 chr9 129498766 129498857 -12772587 + MIR SINE MIR 47 152 -56 348 278 10 0 chr9 129499581 129499678 -12771766 + MER96 DNA MER1_type? 1 98 -77 345 163 31 71 chr9 129499868 129499966 -12771478 - MLT1K LTR MaLR -55 533 440 1724 156 17 20 chr9 129499981 129500283 -12771161 - AluJo SINE Alu -7 305 5 445 249 15 107 chr9 129500316 129500416 -12771028 + MIR SINE MIR 5 82 -180 1931 114 4 4 chr9 129500416 129500736 -12770708 - AluSx SINE Alu 0 321 2 445 249 15 107 chr9 129500736 129500830 -12770614 + MIR SINE MIR 82 183 -79 22 35 0 0 chr9 129501179 129501208 -12770236 + AT_rich Low_complexity Low_complexity 1 29 0 480 326 34 6 chr9 129501269 129501447 -12769997 + MIR SINE MIR 76 258 -4 539 276 72 47 chr9 129501467 129501613 -12769831 + MER113 DNA MER1_type? 160 301 -220 1568 155 0 19 chr9 129501613 129501871 -12769573 + AluJo SINE Alu 38 290 -22 539 276 72 47 chr9 129501871 129502003 -12769441 + MER113 DNA MER1_type? 301 445 -76 302 324 81 0 chr9 129502092 129502240 -12769204 + MIR SINE MIR 69 228 -34 2002 110 84 28 chr9 129503634 129503989 -12767455 + THE1C LTR MaLR 1 375 0 203 150 100 0 chr9 129504106 129504146 -12767298 + MIR SINE MIR 123 166 -96 413 309 123 39 chr9 129504898 129505231 -12766213 + L2 LINE L2 2867 3227 -86 207 287 0 32 chr9 129505312 129505406 -12766038 + G-rich Low_complexity Low_complexity 5 95 0 533 290 170 18 chr9 129506075 129506299 -12765145 + MIR SINE MIR 2 259 -3 491 329 29 37 chr9 129506941 129507187 -12764257 - MIR SINE MIR -12 250 7 1031 261 110 53 chr9 129508209 129508665 -12762779 - MLT1J LTR MaLR -9 502 21 1291 321 83 30 chr9 129508782 129510502 -12760942 + L1M4 LINE L1 2890 4700 -1446 646 298 56 19 chr9 129510867 129511330 -12760114 + L1M4 LINE L1 2664 3143 -3003 280 0 0 0 chr9 129511341 129511375 -12760069 + HERVL-A1 LTR ERVL 5621 5654 0 3512 60 21 0 chr9 129511375 129511810 -12759634 + MLT2A1 LTR ERVL 1 444 0 1264 164 226 22 chr9 129511810 129512133 -12759311 - MSTD LTR MaLR -7 389 1 465 318 143 28 chr9 129512139 129512460 -12758984 + L1M4 LINE L1 3145 3502 -2644 900 207 13 0 chr9 129512786 129512936 -12758508 - FRAM SINE Alu -25 151 1 4215 166 32 1 chr9 129513027 129513805 -12757639 + L1MB2 LINE L1 5369 6170 -1 1204 288 63 35 chr9 129513862 129514580 -12756864 - L1MEc LINE L1 -1820 4720 3983 1451 221 90 52 chr9 129514588 129515045 -12756399 + MLT2B1 LTR ERVL 1 474 -46 314 98 20 0 chr9 129515055 129515106 -12756338 + (TC)n Simple_repeat Simple_repeat 2 53 0 312 131 0 0 chr9 129515138 129515194 -12756250 + MLT2C1 LTR ERVL 350 397 0 638 283 137 28 chr9 129515212 129516461 -12754983 - L1MEc LINE L1 -2583 3957 2524 3419 166 149 65 chr9 129516613 129517328 -12754116 - L1MC3 LINE L1 0 7785 6958 791 145 0 0 chr9 129517328 129517452 -12753992 - L1MA3 LINE L1 0 6305 6182 3419 166 149 65 chr9 129517452 129517683 -12753761 - L1MC3 LINE L1 -827 6958 6748 435 282 71 36 chr9 129517959 129518307 -12753137 - L1MEc LINE L1 -4564 1984 1627 3350 156 68 77 chr9 129518327 129518859 -12752585 - L1MB3 LINE L1 -2 6181 5646 2095 130 3 0 chr9 129518859 129519158 -12752286 + AluJb SINE Alu 1 300 -12 3350 156 68 77 chr9 129519158 129519327 -12752117 - L1MB3 LINE L1 -537 5646 5477 2034 107 0 66 chr9 129519327 129519645 -12751799 - AluSx SINE Alu -15 297 1 3350 156 68 77 chr9 129519645 129519815 -12751629 - L1MB3 LINE L1 -706 5477 5295 596 326 171 0 chr9 129519828 129520184 -12751260 - L1MEc LINE L1 -5700 830 414 * 708 291 94 30 chr9 129520183 129520554 -12750890 + L1M4 LINE L1 3622 4016 -2130 298 221 212 88 chr9 129520744 129520857 -12750587 + MIR SINE MIR 23 149 -113 181 286 0 0 chr9 129520888 129520930 -12750514 + MIR SINE MIR 218 259 -3 1111 180 0 30 chr9 129521311 129521544 -12749900 + AluSc SINE Alu 1 226 -83 350 340 27 13 chr9 129521859 129522009 -12749435 + MIR SINE MIR 10 161 -101 347 185 19 37 chr9 129523070 129523232 -12748212 + (TCTCTG)n Simple_repeat Simple_repeat 2 160 0 911 232 75 117 chr9 129523801 129524279 -12747165 - MLT1G LTR MaLR 0 590 137 2433 57 0 0 chr9 129524279 129524606 -12746838 - AluY SINE Alu 0 329 3 911 232 75 117 chr9 129524606 129524700 -12746744 - MLT1G LTR MaLR -453 137 41 355 339 55 16 chr9 129524813 129524996 -12746448 + MIR SINE MIR 16 205 -57 908 284 13 0 chr9 129525468 129525693 -12745751 + MIR SINE MIR 8 235 -27 694 133 0 0 chr9 129525848 129525946 -12745498 - AluJb SINE Alu -15 297 200 2783 236 46 52 chr9 129525978 129526681 -12744763 + L1MC5 LINE L1 6276 6982 -979 183 80 0 0 chr9 129526681 129526706 -12744738 + (CAAAC)n Simple_repeat Simple_repeat 4 28 0 2783 236 46 52 chr9 129526706 129526983 -12744461 + L1MC5 LINE L1 6982 7259 -702 1613 173 95 7 chr9 129526983 129527267 -12744177 + AluJb SINE Alu 1 309 -3 2783 236 46 52 chr9 129527267 129527584 -12743860 + L1MC5 LINE L1 7259 7560 -401 1205 171 0 0 chr9 129527584 129527765 -12743679 - AluJb SINE Alu -6 306 126 868 187 0 0 chr9 129527806 129527940 -12743504 - AluJb SINE Alu -176 136 3 684 219 85 47 chr9 129527942 129528307 -12743137 + L1MC5 LINE L1 7553 7931 -30 231 114 0 0 chr9 129528487 129528531 -12742913 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2019 103 44 4 chr9 129528531 129528799 -12742645 - AluSx SINE Alu -33 279 1 733 234 143 65 chr9 129529388 129529913 -12741531 + MLT1G1 LTR MaLR 20 585 -10 393 257 139 28 chr9 129530054 129530198 -12741246 + MIR SINE MIR 14 173 -89 946 174 150 48 chr9 129530243 129530379 -12741065 + MER33 DNA MER1_type 1 122 -2463 2495 64 0 3 chr9 129530379 129530674 -12740770 - AluY SINE Alu -17 294 1 946 174 150 48 chr9 129530674 129530831 -12740613 + MER33 DNA MER1_type 122 324 0 268 308 64 0 chr9 129530844 129530922 -12740522 + MIR SINE MIR 180 262 0 461 286 76 3 chr9 129531012 129531216 -12740228 - MIR SINE MIR -6 256 37 546 282 130 5 chr9 129532141 129532326 -12739118 + MIR SINE MIR 50 256 -6 525 104 0 0 chr9 129532329 129532406 -12739038 + (ATG)n Simple_repeat Simple_repeat 2 78 0 338 359 45 6 chr9 129532418 129532574 -12738870 + MIR SINE MIR 78 239 -23 2228 119 14 30 chr9 129536979 129537340 -12734104 + THE1A LTR MaLR 1 355 0 302 307 110 8 chr9 129537771 129537898 -12733546 - MIR3 SINE MIR 0 208 69 782 224 107 16 chr9 129538068 129538494 -12732950 + MLT1F LTR MaLR 36 540 -2 228 324 151 39 chr9 129539115 129539600 -12731844 - L2 LINE L2 -786 2528 1990 373 331 114 0 chr9 129539764 129539939 -12731505 + L3 LINE CR1 1373 1567 -10 1980 167 0 3 chr9 129541638 129541944 -12729500 - AluJo SINE Alu -7 305 1 395 250 52 0 chr9 129541995 129542091 -12729353 + L2 LINE L2 3200 3300 -13 207 69 0 0 chr9 129542092 129542121 -12729323 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 388 303 49 14 chr9 129542902 129543044 -12728400 + MIR SINE MIR 24 170 -92 1349 261 73 3 chr9 129543064 129543435 -12728009 - Charlie4a DNA MER1_type -20 488 92 437 369 34 17 chr9 129543721 129543954 -12727490 - MIR SINE MIR -13 249 13 2258 129 0 0 chr9 129543979 129544288 -12727156 + AluSx SINE Alu 1 309 -3 180 0 0 0 chr9 129544632 129544652 -12726792 + (T)n Simple_repeat Simple_repeat 1 20 0 207 369 49 8 chr9 129544737 129544859 -12726585 - MER5B DNA MER1_type -1 177 51 902 164 0 0 chr9 129544874 129545014 -12726430 - FRAM SINE Alu -36 140 1 676 275 69 5 chr9 129545168 129545386 -12726058 + MIR SINE MIR 31 262 0 249 259 17 0 chr9 129545773 129545831 -12725613 + MIR SINE MIR 57 115 -147 575 323 68 20 chr9 129546223 129546870 -12724574 + L1M4 LINE L1 4269 4946 -1200 28 48 0 0 chr9 129547193 129547235 -12724209 + AT_rich Low_complexity Low_complexity 1 42 0 1915 154 31 0 chr9 129547450 129547621 -12723823 - AluJo SINE Alu -10 302 117 324 64 0 0 chr9 129547621 129547668 -12723776 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1915 154 31 0 chr9 129547668 129547789 -12723655 - AluJo SINE Alu -195 117 1 2050 247 10 0 chr9 129547953 129548447 -12722997 - L1ME2 LINE L1 -209 5955 5457 1084 271 122 16 chr9 129549499 129549941 -12721503 - L2 LINE L2 0 3313 2825 354 279 259 27 chr9 129550269 129550563 -12720881 - L2 LINE L2 -31 3282 2921 234 300 110 0 chr9 129550611 129550711 -12720733 - L2 LINE L2 -511 2803 2693 1434 211 198 24 chr9 129550726 129550891 -12720553 + L1MD3 LINE L1 7402 7537 -458 1097 16 78 0 chr9 129550891 129551020 -12720424 - MER85 DNA T2_type 0 139 1 1434 211 198 24 chr9 129551020 129551360 -12720084 + L1MD3 LINE L1 7537 7995 0 414 0 0 0 chr9 129552341 129552387 -12719057 + (GA)n Simple_repeat Simple_repeat 1 46 0 751 220 102 0 chr9 129552650 129552836 -12718608 + MER63A DNA MER1_type 6 210 0 503 316 111 32 chr9 129553472 129553905 -12717539 + L2 LINE L2 1637 2103 -1211 312 314 12 0 chr9 129554633 129554719 -12716725 + MIR SINE MIR 70 156 -106 2505 85 3 0 chr9 129555796 129556101 -12715343 + AluSx SINE Alu 1 306 -6 538 278 24 6 chr9 129556132 129556301 -12715143 - MER5B DNA MER1_type -5 173 2 498 233 147 47 chr9 129556491 129556713 -12714731 + MIR SINE MIR 13 262 0 466 279 117 27 chr9 129557231 129557453 -12713991 - MIR SINE MIR -12 250 9 197 143 0 0 chr9 129558141 129558176 -12713268 - MIR SINE MIR -79 129 95 2052 112 31 7 chr9 129558177 129558464 -12712980 + AluSx SINE Alu 1 294 -18 239 256 200 11 chr9 129558735 129558825 -12712619 + MIR SINE MIR 46 152 -110 336 315 131 20 chr9 129558841 129558873 -12712571 + HAL1 LINE L1 981 1008 -1499 1631 133 11 130 chr9 129558873 129559226 -12712218 + AluJb SINE Alu 1 311 -1 336 315 131 20 chr9 129559226 129559449 -12711995 + HAL1 LINE L1 1008 1302 -1205 261 83 0 0 chr9 129559450 129559486 -12711958 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 1142 223 160 52 chr9 129559844 129560301 -12711143 - MLT1H LTR MaLR -43 506 1 370 330 50 5 chr9 129560321 129560521 -12710923 + MIR SINE MIR 48 256 -6 253 222 33 78 chr9 129561180 129561270 -12710174 - L2 LINE L2 -3 3269 3184 238 253 12 12 chr9 129561711 129561794 -12709650 + (CA)n Simple_repeat Simple_repeat 1 83 0 189 0 0 0 chr9 129561821 129561842 -12709602 + (TG)n Simple_repeat Simple_repeat 1 21 0 358 210 80 20 chr9 129561895 129561995 -12709449 + L2 LINE L2 3162 3267 -5 367 320 12 6 chr9 129563020 129563192 -12708252 + GA-rich Low_complexity Low_complexity 2 174 0 289 374 6 0 chr9 129563242 129563408 -12708036 + (TG)n Simple_repeat Simple_repeat 1 167 0 373 310 14 28 chr9 129563444 129563589 -12707855 + L2 LINE L2 3171 3313 0 227 271 34 0 chr9 129563979 129564038 -12707406 + MIR SINE MIR 85 145 -63 266 284 14 0 chr9 129564509 129564583 -12706861 + MIR SINE MIR 67 141 -67 271 226 47 47 chr9 129564678 129564784 -12706660 + L1ME4a LINE L1 5957 6062 -59 1943 134 0 3 chr9 129564874 129565187 -12706257 + AluSq SINE Alu 1 312 0 281 264 107 16 chr9 129565659 129565780 -12705664 - MIR SINE MIR -111 151 20 224 226 19 0 chr9 129566170 129566223 -12705221 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 206 352 0 0 chr9 129566230 129566301 -12705143 - L2 LINE L2 -10 3262 3192 181 222 0 0 chr9 129566348 129566384 -12705060 + L3 LINE CR1 632 667 -910 416 303 0 41 chr9 129566500 129566645 -12704799 + L2 LINE L2 3175 3313 0 909 172 0 32 chr9 129566668 129567008 -12704436 + (TGGA)n Simple_repeat Simple_repeat 1 329 0 198 351 18 35 chr9 129567070 129567184 -12704260 - L3 LINE CR1 -74 1503 1392 394 239 12 148 chr9 129567287 129567530 -12703914 - L3 LINE CR1 -387 1190 981 209 213 0 21 chr9 129567535 129567582 -12703862 + MIR SINE MIR 183 228 -34 230 325 75 0 chr9 129568008 129568088 -12703356 - L2 LINE L2 -20 3293 3208 555 255 83 25 chr9 129568176 129568333 -12703111 - MER96 DNA MER1_type? -2 173 8 261 267 272 15 chr9 129569073 129569279 -12702165 - MIR SINE MIR 0 262 4 700 228 105 53 chr9 129569487 129569833 -12701611 - MLT1J2 LTR MaLR -1 449 30 201 152 0 0 chr9 129569861 129569894 -12701550 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 2293 77 3 3 chr9 129570349 129570647 -12700797 - AluSq SINE Alu -13 300 3 1099 270 45 12 chr9 129571325 129571662 -12699782 + LTR16C LTR ERVL 144 491 0 424 320 75 58 chr9 129572661 129573018 -12698426 + MLT1I LTR MaLR 40 402 -7 1954 198 33 54 chr9 129573018 129573539 -12697905 - MER74A LTR ERVL 0 558 49 341 103 0 0 chr9 129573942 129574000 -12697444 - AluSc SINE Alu 0 299 242 250 325 131 0 chr9 129624024 129624298 -12647146 + L1M4 LINE L1 4311 4620 -1526 2131 127 0 37 chr9 129624388 129624710 -12646734 - AluSx SINE Alu -1 311 2 220 317 16 57 chr9 129624739 129624862 -12646582 + L2 LINE L2 3190 3307 -6 2195 117 0 0 chr9 129625081 129625380 -12646064 + AluSx SINE Alu 1 299 -13 768 269 33 20 chr9 129625547 129625792 -12645652 + MIR SINE MIR 14 261 -1 181 290 99 23 chr9 129626254 129626385 -12645059 - L2 LINE L2 -619 2695 2555 1485 185 0 68 chr9 129627030 129627199 -12644245 - AluJo SINE Alu -10 302 123 2345 103 3 0 chr9 129627199 129627501 -12643943 - AluSq SINE Alu -10 303 1 1859 144 0 64 chr9 129627503 129627830 -12643614 - AluJb SINE Alu -6 306 1 1485 185 0 68 chr9 129627830 129627981 -12643463 - AluJo SINE Alu -190 122 1 3372 143 21 170 chr9 129627991 129628645 -12642799 - L1MC3 LINE L1 -7 7778 7329 2518 72 0 0 chr9 129628645 129628949 -12642495 - AluSc SINE Alu -5 304 1 3372 143 21 170 chr9 129628949 129629313 -12642131 - L1MC3 LINE L1 -456 7329 6912 731 216 10 35 chr9 129630838 129631037 -12640407 + MIR SINE MIR 33 226 -36 181 132 0 53 chr9 129631102 129631140 -12640304 - L2 LINE L2 -15 3298 3263 * 315 307 24 8 chr9 129631107 129631234 -12640210 - MIR SINE MIR -13 249 121 445 220 25 17 chr9 129631402 129631520 -12639924 - L1MC4 LINE L1 -2 8040 7922 229 322 22 0 chr9 129631549 129631639 -12639805 + L1MC4 LINE L1 6614 6705 -1337 665 206 93 20 chr9 129631664 129631868 -12639576 - L1MC4 LINE L1 -124 7918 7700 23 54 0 0 chr9 129631905 129631942 -12639502 + AT_rich Low_complexity Low_complexity 1 37 0 12901 209 44 36 chr9 129631946 129632066 -12639378 - L1MB4 LINE L1 -40 6376 6258 2699 94 6 6 chr9 129632066 129632427 -12639017 - THE1B LTR MaLR -3 361 1 12901 209 44 36 chr9 129632427 129636963 -12634481 - L1MB4 LINE L1 -158 6258 1649 258 32 0 0 chr9 129636963 129636994 -12634450 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 12901 209 44 36 chr9 129636994 129637831 -12633613 - L1MB4 LINE L1 -4767 1649 820 328 365 0 6 chr9 129639137 129639293 -12632151 + GA-rich Low_complexity Low_complexity 2 156 0 193 268 14 42 chr9 129640002 129640073 -12631371 - MIR SINE MIR -77 131 63 296 82 0 20 chr9 129640122 129640171 -12631273 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 473 278 89 86 chr9 129640310 129640601 -12630843 + L2 LINE L2 2981 3272 0 2039 128 0 7 chr9 129640675 129640991 -12630453 + AluSx SINE Alu 1 314 0 2022 139 0 23 chr9 129641319 129641628 -12629816 + AluJo SINE Alu 1 302 -10 180 111 0 0 chr9 129641910 129641937 -12629507 + (T)n Simple_repeat Simple_repeat 1 27 0 1003 260 163 46 chr9 129641962 129642423 -12629021 - LTR33A LTR ERVL -8 515 1 401 227 109 8 chr9 129642597 129642716 -12628728 + L1MC5 LINE L1 7255 7385 -576 2071 130 0 0 chr9 129642737 129643014 -12628430 + AluSx SINE Alu 7 283 -29 28 0 0 0 chr9 129643033 129643061 -12628383 + AT_rich Low_complexity Low_complexity 1 28 0 1472 210 32 86 chr9 129643076 129643584 -12627860 + L1MC5 LINE L1 7404 7884 -77 1970 131 3 3 chr9 129643584 129643904 -12627540 - AluSx SINE Alu 0 322 3 1472 210 32 86 chr9 129643904 129643931 -12627513 + L1MC5 LINE L1 7884 7911 -50 191 170 21 0 chr9 129644011 129644058 -12627386 + (TA)n Simple_repeat Simple_repeat 1 48 0 277 325 57 35 chr9 129644058 129644406 -12627038 + L1M4 LINE L1 4140 4504 -1642 2410 107 0 0 chr9 129644406 129644714 -12626730 + AluY SINE Alu 1 308 -3 277 325 57 35 chr9 129644714 129644873 -12626571 + L1M4 LINE L1 4504 4658 -1488 275 284 11 11 chr9 129644948 129645043 -12626401 + L1MEd LINE L1 33 127 -5992 523 321 25 25 chr9 129645382 129645662 -12625782 + L1MEd LINE L1 544 823 -5296 1575 123 65 61 chr9 129645671 129645932 -12625512 + AluSx SINE Alu 1 262 -50 381 266 78 104 chr9 129645933 129646173 -12625271 + L1MEd LINE L1 960 1205 -5105 2470 65 0 0 chr9 129646173 129646466 -12624978 + AluY SINE Alu 2 294 -17 381 266 78 104 chr9 129646466 129646626 -12624818 + L1MEd LINE L1 1205 1368 -4942 1474 205 0 21 chr9 129646626 129646914 -12624530 + AluJo SINE Alu 1 282 -30 2308 111 0 0 chr9 129646914 129647211 -12624233 - AluSx SINE Alu -15 297 1 381 266 78 104 chr9 129647211 129647572 -12623872 + L1MEd LINE L1 1366 1757 -4553 1964 229 32 48 chr9 129647630 129648193 -12623251 + MLT2B3 LTR ERVL 1 554 0 310 181 14 14 chr9 129648339 129648411 -12623033 + MLT1H LTR MaLR 478 549 0 227 304 43 9 chr9 129648418 129648533 -12622911 + L1M4 LINE L1 4724 4842 -1304 2157 112 31 0 chr9 129648551 129648838 -12622606 + AluSx SINE Alu 1 296 -16 278 206 132 0 chr9 129650115 129650183 -12621261 + MLT1L LTR MaLR 3 79 -536 1561 159 83 10 chr9 129650225 129650514 -12620930 + AluJo SINE Alu 3 312 0 355 251 60 145 chr9 129650518 129650869 -12620575 + MLT1J LTR MaLR 111 431 -80 869 327 71 23 chr9 129651191 129652068 -12619376 - L1M4 LINE L1 -1544 4602 3684 379 259 101 55 chr9 129652225 129652609 -12618835 + MLT1H LTR MaLR 57 549 0 617 156 32 6 chr9 129653228 129653478 -12617966 + AluJ SINE Alu 1 305 -7 553 295 79 4 chr9 129653570 129653811 -12617633 + MER112 DNA MER1_type 1 259 -1 780 285 107 41 chr9 129653812 129654656 -12616788 - L1ME LINE L1 -520 5650 4747 334 276 57 86 chr9 129654681 129654960 -12616484 - L1M4 LINE L1 -2629 3517 3247 1948 137 55 27 chr9 129655112 129655477 -12615967 + THE1C LTR MaLR 1 375 0 22 70 0 0 chr9 129655482 129655525 -12615919 + AT_rich Low_complexity Low_complexity 1 43 0 351 292 41 32 chr9 129655926 129656265 -12615179 + L1M4 LINE L1 4528 4869 -1277 6090 89 25 17 chr9 129656287 129657173 -12614271 - L1PA11 LINE L1 0 6174 5282 290 320 27 0 chr9 129657174 129657324 -12614120 + L1M4 LINE L1 4881 5034 -1112 312 27 0 0 chr9 129657546 129657583 -12613861 + (A)n Simple_repeat Simple_repeat 1 37 0 877 248 110 7 chr9 129657588 129658010 -12613434 + MER45C DNA AcHobo 81 631 -322 517 211 108 57 chr9 129658273 129658467 -12612977 + MLT1H LTR MaLR 3 206 -343 1362 231 129 48 chr9 129658495 129658934 -12612510 + MLT2B1 LTR ERVL 1 484 -36 381 102 0 0 chr9 129658934 129658993 -12612451 + (CA)n Simple_repeat Simple_repeat 2 60 0 1362 231 129 48 chr9 129658993 129659034 -12612410 + MLT2B1 LTR ERVL 484 520 0 759 118 31 14 chr9 129659503 129660139 -12611305 + (TG)n Simple_repeat Simple_repeat 1 646 0 875 63 0 53 chr9 129660151 129660340 -12611104 + (TG)n Simple_repeat Simple_repeat 2 180 0 821 189 61 6 chr9 129661434 129661598 -12609846 + MLT1A2 LTR MaLR 1 173 -217 215 241 0 35 chr9 129661611 129661669 -12609775 + CT-rich Low_complexity Low_complexity 6 61 0 1007 170 16 16 chr9 129661684 129661866 -12609578 + MLT1A2 LTR MaLR 189 370 -4 191 35 0 35 chr9 129662208 129662237 -12609207 + (TAA)n Simple_repeat Simple_repeat 1 28 0 263 278 174 24 chr9 129662275 129662487 -12608957 - MIR SINE MIR -12 250 7 622 155 19 0 chr9 129663727 129663830 -12607614 + L1MB5 LINE L1 6070 6174 0 326 202 58 39 chr9 129663894 129663998 -12607446 + MIR SINE MIR 113 218 -44 287 288 124 30 chr9 129665211 129665541 -12605903 + HAL1b LINE L1 150 510 -838 1556 254 127 39 chr9 129665740 129665776 -12605668 - L2 LINE L2 -1099 2215 2184 2176 130 143 8 chr9 129665776 129666153 -12605291 - MSTA LTR MaLR 0 428 1 1556 254 127 39 chr9 129666153 129666826 -12604618 - L2 LINE L2 -1130 2184 1444 1283 138 39 17 chr9 129666944 129667176 -12604268 + MSTA LTR MaLR 192 428 0 1346 250 71 21 chr9 129667177 129667657 -12603787 - L2 LINE L2 -2314 1000 497 1572 199 51 80 chr9 129667674 129668085 -12603359 + MLT1H LTR MaLR 41 439 -110 842 150 7 21 chr9 129668127 129668267 -12603177 - MLT1E2 LTR MaLR 0 626 489 364 167 144 22 chr9 129668279 129668369 -12603075 - HAL1 LINE L1 -388 2119 2019 1633 147 83 0 chr9 129668369 129668669 -12602775 - L1MA4A LINE L1 -6 6297 5973 197 279 36 93 chr9 129668810 129668950 -12602494 + L2 LINE L2 1663 1794 -1520 1420 180 46 0 chr9 129668951 129669256 -12602188 + MER33 DNA MER1_type 6 324 0 1021 250 87 6 chr9 129669256 129669600 -12601844 + L2 LINE L2 1791 2162 -1152 278 0 0 51 chr9 129669600 129669639 -12601805 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 621 27 0 0 chr9 129669657 129669732 -12601712 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 283 219 27 0 chr9 129669946 129670019 -12601425 + CT-rich Low_complexity Low_complexity 5 79 0 959 84 14 0 chr9 129670020 129670162 -12601282 + (TTCC)n Simple_repeat Simple_repeat 4 147 0 1556 167 36 0 chr9 129670163 129670438 -12601006 - AluJo SINE Alu -27 285 1 307 159 48 0 chr9 129670444 129670507 -12600937 + L2 LINE L2 2153 2218 -1096 1375 260 52 15 chr9 129670507 129670911 -12600533 + L2 LINE L2 2804 3222 -91 546 299 103 16 chr9 129670952 129671273 -12600171 - HAL1 LINE L1 -2158 349 1 270 56 0 0 chr9 129671317 129671353 -12600091 + (TG)n Simple_repeat Simple_repeat 2 37 0 970 282 67 29 chr9 129671353 129671803 -12599641 - L1ME LINE L1 -299 5822 5356 554 253 95 8 chr9 129671805 129672046 -12599398 + L1ME4a LINE L1 5855 6116 -5 1323 48 0 0 chr9 129672812 129672977 -12598467 + AluY SINE Alu 145 309 -2 1536 286 105 28 chr9 129673895 129674892 -12596552 + L2 LINE L2 1824 2897 -417 575 211 43 38 chr9 129675217 129675402 -12596042 - L1MC5 LINE L1 -34 7927 7742 1857 230 92 32 chr9 129675721 129676351 -12595093 + L1ME2 LINE L1 4591 5258 -888 1090 127 29 6 chr9 129676352 129676525 -12594919 - AluJo SINE Alu -15 297 121 948 217 69 27 chr9 129676525 129677322 -12594122 + L1ME2 LINE L1 5265 6152 -12 250 291 82 9 chr9 129677340 129677450 -12593994 - MIR3 SINE MIR -23 185 68 1679 181 0 14 chr9 129679902 129680195 -12591249 + AluJo SINE Alu 1 289 -23 2139 107 0 0 chr9 129680292 129680591 -12590853 + AluSx SINE Alu 14 312 0 236 211 53 0 chr9 129681105 129681162 -12590282 + THE1C LTR MaLR 171 230 -145 264 341 185 9 chr9 129681667 129681878 -12589566 + L3 LINE CR1 1329 1576 -1 786 278 28 20 chr9 129682093 129682341 -12589103 - MIR SINE MIR 0 262 13 188 266 76 13 chr9 129682339 129682418 -12589026 + MIR SINE MIR 159 242 -20 * 260 343 0 18 chr9 129682489 129682655 -12588789 + CT-rich Low_complexity Low_complexity 1 163 0 300 347 6 6 chr9 129683822 129683995 -12587449 + (CA)n Simple_repeat Simple_repeat 2 174 0 252 254 0 0 chr9 129684642 129684701 -12586743 - MER116 DNA Mariner 0 80 22 461 285 102 56 chr9 129684758 129685239 -12586205 - L2 LINE L2 -188 3084 2590 411 308 128 0 chr9 129685259 129685415 -12586029 + MIR SINE MIR 87 262 0 261 253 232 10 chr9 129685750 129685849 -12585595 - MIR SINE MIR -67 141 21 248 277 65 60 chr9 129686219 129686403 -12585041 + L1ME4a LINE L1 5768 5952 -169 429 265 59 47 chr9 129686403 129686573 -12584871 + MER104 DNA Tc2 4 175 -5 348 257 0 0 chr9 129687060 129687130 -12584314 - MIR SINE MIR -5 257 188 2235 178 0 10 chr9 129687137 129687524 -12583920 + MLT1B LTR MaLR 8 390 0 457 243 150 58 chr9 129687558 129687731 -12583713 - MLT1G1 LTR MaLR 0 595 407 * 1199 232 35 14 chr9 129687725 129688047 -12583397 - MLT1G1 LTR MaLR -275 300 1 389 257 9 19 chr9 129688048 129688153 -12583291 - MIR SINE MIR -99 163 60 226 326 110 29 chr9 129688163 129688408 -12583036 - L2 LINE L2 -497 2817 2553 202 240 100 0 chr9 129688591 129688641 -12582803 + L2 LINE L2 3218 3272 0 203 156 22 22 chr9 129689224 129689269 -12582175 + L2 LINE L2 3141 3185 -87 268 380 7 0 chr9 129691471 129691608 -12579836 + (TG)n Simple_repeat Simple_repeat 1 138 0 198 0 0 0 chr9 129691642 129691664 -12579780 + (TG)n Simple_repeat Simple_repeat 2 23 0 1871 215 155 40 chr9 129691691 129692213 -12579231 + MLT1G LTR MaLR 1 582 -8 1639 246 97 37 chr9 129692334 129692653 -12578791 - L2 LINE L2 -21 3292 2994 1997 180 27 66 chr9 129692653 129692954 -12578490 + MLT1C LTR MaLR 4 280 -187 1754 168 0 0 chr9 129692954 129693251 -12578193 + AluJo SINE Alu 1 297 -15 1997 180 27 66 chr9 129693251 129693432 -12578012 + MLT1C LTR MaLR 280 467 0 1639 246 97 37 chr9 129693432 129694013 -12577431 - L2 LINE L2 -319 2994 2359 236 295 0 0 chr9 129694014 129694094 -12577350 + (TG)n Simple_repeat Simple_repeat 1 80 0 2071 117 7 0 chr9 129694179 129694488 -12576956 + AluSx SINE Alu 1 311 -1 264 122 0 0 chr9 129694594 129694635 -12576809 + (TG)n Simple_repeat Simple_repeat 1 41 0 1568 187 0 29 chr9 129694969 129695460 -12575984 + AluJb SINE Alu 1 312 0 347 283 31 73 chr9 129695468 129695659 -12575785 + L1M4 LINE L1 3073 3255 -2891 932 319 65 11 chr9 129695853 129696204 -12575240 + HERV16 LTR ERVL 2448 2817 -2179 319 321 80 22 chr9 129696204 129696341 -12575103 - L1ME3A LINE L1 -226 5944 5800 957 290 39 23 chr9 129696430 129697048 -12574396 - L1ME3A LINE L1 -535 5631 5004 252 213 102 39 chr9 129697086 129697213 -12574231 + L1M4 LINE L1 3851 3985 -2161 875 266 106 98 chr9 129697519 129698063 -12573381 - L1ME3A LINE L1 -1217 4929 4391 2548 48 0 0 chr9 129698063 129698372 -12573072 - AluY SINE Alu -2 309 1 875 266 106 98 chr9 129698372 129699817 -12571627 - L1ME3A LINE L1 -1755 4391 2923 643 199 186 27 chr9 129699835 129700056 -12571388 + MIR SINE MIR 5 260 -2 316 345 54 30 chr9 129700403 129700571 -12570873 - L2 LINE L2 -814 2500 2329 3356 209 55 7 chr9 129700834 129701512 -12569932 + MER45B DNA AcHobo 1 710 -330 780 135 0 0 chr9 129701512 129701623 -12569821 + AluSq/x SINE Alu 5 115 -198 2084 118 0 0 chr9 129701628 129701924 -12569520 + AluSx SINE Alu 1 296 -16 1388 185 8 62 chr9 129701927 129702121 -12569323 + MER45B DNA AcHobo 703 871 -710 2300 86 3 0 chr9 129702121 129702425 -12569019 + AluSp SINE Alu 3 307 -6 1388 185 8 62 chr9 129702425 129702582 -12568862 + MER45B DNA AcHobo 871 1035 -5 354 281 146 107 chr9 129702764 129703252 -12568192 - L1ME4a LINE L1 -225 5896 5390 359 231 80 48 chr9 129703253 129703459 -12567985 - L1ME4a LINE L1 -768 5378 5161 2171 108 3 0 chr9 129703459 129703765 -12567679 - AluSx SINE Alu -5 307 1 359 231 80 48 chr9 129703765 129703809 -12567635 - L1ME4a LINE L1 -985 5161 5120 40 0 0 0 chr9 129704684 129704724 -12566720 + AT_rich Low_complexity Low_complexity 1 40 0 1690 178 3 3 chr9 129704724 129705022 -12566422 - AluJb SINE Alu -14 298 1 688 81 0 0 chr9 129705217 129705304 -12566140 - THE1B LTR MaLR 0 364 278 594 163 28 7 chr9 129705281 129705422 -12566022 - Charlie5 DNA MER1_type -41 2571 2428 * 2382 91 54 20 chr9 129705422 129705774 -12565670 - THE1B LTR MaLR 0 364 1 1135 320 28 17 chr9 129705855 129706436 -12565008 - HAL1b LINE L1 -705 643 57 1137 205 108 14 chr9 129706438 129706716 -12564728 - AluSx SINE Alu -3 309 6 1221 172 98 22 chr9 129707313 129707465 -12563979 + MER33 DNA MER1_type 1 131 -2454 2341 95 72 20 chr9 129707465 129707811 -12563633 + THE1B LTR MaLR 1 364 0 1221 172 98 22 chr9 129707811 129707969 -12563475 + MER33 DNA MER1_type 131 324 0 302 299 26 0 chr9 129708626 129708703 -12562741 - L1ME4a LINE L1 -1130 5016 4938 21 0 0 0 chr9 129708790 129708811 -12562633 + AT_rich Low_complexity Low_complexity 1 21 0 356 202 75 16 chr9 129708898 129709035 -12562409 - HsTC2 DNA Tc2 0 1900 41 383 244 0 0 chr9 129709135 129709225 -12562219 - L1ME LINE L1 -362 5800 5711 339 316 44 35 chr9 129709232 129709346 -12562098 + L1ME LINE L1 5347 5461 -660 232 158 183 24 chr9 129709365 129709447 -12561997 + L1ME LINE L1 5725 5819 -302 2254 93 0 0 chr9 129709711 129710001 -12561443 + AluSg SINE Alu 1 290 -20 485 291 97 57 chr9 129710005 129711134 -12560310 + L1M4 LINE L1 2677 3851 -2295 377 280 43 105 chr9 129711287 129712170 -12559274 + L1M4 LINE L1 3839 4677 -1469 365 329 79 93 chr9 129712352 129712441 -12559003 + L1M4 LINE L1 4903 4992 -1154 1444 166 60 21 chr9 129712441 129712724 -12558720 + AluJo SINE Alu 1 294 -18 365 329 79 93 chr9 129712724 129712990 -12558454 + L1M4 LINE L1 4992 5253 -893 562 181 9 9 chr9 129713058 129713163 -12558281 + MER106B DNA MER1_type 1 105 -954 822 290 103 13 chr9 129714100 129714973 -12556471 - L1ME3 LINE L1 -306 6136 5189 2050 224 72 49 chr9 129714983 129715756 -12555688 - L1MC5 LINE L1 -38 7923 7133 1439 301 80 50 chr9 129715962 129716537 -12554907 - L1ME3 LINE L1 -1465 4961 4404 817 151 16 0 chr9 129716537 129716663 -12554781 - FLAM_C SINE Alu -1 132 5 1439 301 80 50 chr9 129716663 129716750 -12554694 - L1ME3 LINE L1 -2022 4404 4321 1794 136 61 64 chr9 129716750 129717126 -12554318 + THE1C LTR MaLR 1 375 0 1439 301 80 50 chr9 129717126 129718046 -12553398 - L1ME3 LINE L1 -2105 4321 3332 549 310 70 15 chr9 129718125 129718654 -12552790 - L1ME3 LINE L1 -3276 3150 2593 1737 164 0 16 chr9 129718709 129719014 -12552430 + AluJo SINE Alu 3 302 -10 345 281 76 67 chr9 129719068 129719278 -12552166 - L1ME3 LINE L1 -3947 2479 2268 459 35 0 0 chr9 129719624 129719681 -12551763 + (TG)n Simple_repeat Simple_repeat 2 58 0 763 275 77 56 chr9 129719878 129721209 -12550235 - L1MC4a LINE L1 -751 5395 4548 1667 102 4 0 chr9 129721412 129721638 -12549806 - AluSq SINE Alu -85 228 2 198 229 180 0 chr9 129721638 129721699 -12549745 - MER5A DNA MER1_type -114 75 4 674 195 26 116 chr9 129721706 129721896 -12549548 - MER5B DNA MER1_type -5 173 1 998 179 12 6 chr9 129722422 129722595 -12548849 + MER5A DNA MER1_type 2 175 -14 340 296 0 10 chr9 129722616 129722714 -12548730 - MER5B DNA MER1_type -81 97 1 522 130 28 0 chr9 129722948 129723056 -12548388 + CT-rich Low_complexity Low_complexity 1 111 0 282 29 0 0 chr9 129723056 129723091 -12548353 + (TG)n Simple_repeat Simple_repeat 2 36 0 1555 113 0 22 chr9 129723976 129724207 -12547237 + L1MA3 LINE L1 5666 5891 -414 917 72 0 36 chr9 129724209 129724336 -12547108 + AluY SINE Alu 169 292 -19 2445 95 105 8 chr9 129724336 129724726 -12546718 + L1MA3 LINE L1 5878 6305 0 917 72 0 36 chr9 129724726 129724737 -12546707 + AluY SINE Alu 292 302 -9 2012 186 41 72 chr9 129724743 129725260 -12546184 + MLT1D LTR MaLR 1 501 -4 189 0 0 0 chr9 129725501 129725522 -12545922 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 268 267 116 41 chr9 129725953 129726099 -12545345 - MIR SINE MIR -11 251 95 353 316 20 26 chr9 129726432 129726584 -12544860 + L2 LINE L2 2698 2848 -466 1264 243 95 11 chr9 129726610 129727063 -12544381 - HAL1 LINE L1 -4 2503 2013 1425 214 64 121 chr9 129727073 129727575 -12543869 - HAL1 LINE L1 -710 1797 1347 1712 172 7 3 chr9 129727575 129727871 -12543573 - AluJb SINE Alu -15 297 1 1425 214 64 121 chr9 129727871 129728089 -12543355 - HAL1 LINE L1 -1160 1347 1118 1399 144 0 9 chr9 129728125 129728347 -12543097 + AluJb SINE Alu 90 309 -3 771 269 86 94 chr9 129728357 129728663 -12542781 - HAL1 LINE L1 -1409 1098 791 1794 123 63 23 chr9 129728663 129728963 -12542481 + AluSx SINE Alu 1 312 0 771 269 86 94 chr9 129728963 129729356 -12542088 - HAL1 LINE L1 -1716 791 405 861 153 0 7 chr9 129729401 129729538 -12541906 + AluJb SINE Alu 157 292 -20 650 219 48 66 chr9 129729610 129729838 -12541606 - HAL1 LINE L1 -2271 236 13 380 330 30 43 chr9 129729838 129730071 -12541373 + L2 LINE L2 2835 3064 -208 212 174 0 29 chr9 129730429 129730498 -12540946 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 276 337 9 9 chr9 129730500 129730651 -12540793 + CT-rich Low_complexity Low_complexity 1 151 0 205 302 0 0 chr9 129731109 129731162 -12540282 + G-rich Low_complexity Low_complexity 2 54 0 235 308 0 0 chr9 129731206 129731284 -12540160 + (CA)n Simple_repeat Simple_repeat 1 78 0 527 310 34 102 chr9 129731339 129731662 -12539782 - L2 LINE L2 -47 3225 2925 1922 241 72 36 chr9 129731704 129732043 -12539401 + L1ME3A LINE L1 4679 5004 -1158 2008 141 0 3 chr9 129732043 129732340 -12539104 - AluSx SINE Alu -16 296 1 1922 241 72 36 chr9 129732340 129733174 -12538270 + L1ME3A LINE L1 5004 5882 -280 1996 278 101 21 chr9 129733394 129734348 -12537096 + HAL1 LINE L1 777 1806 -701 355 279 103 64 chr9 129734602 129734806 -12536638 + HAL1 LINE L1 2214 2425 -82 526 371 34 21 chr9 129734812 129735278 -12536166 - L2 LINE L2 -575 2739 2268 490 134 12 12 chr9 129735686 129735768 -12535676 - AluJ/FLAM SINE Alu -229 83 2 217 349 0 18 chr9 129735794 129735903 -12535541 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 1815 201 101 20 chr9 129736241 129736685 -12534759 + MLT1D LTR MaLR 1 480 -25 207 100 0 0 chr9 129736690 129736720 -12534724 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 1857 117 11 4 chr9 129736720 129737001 -12534443 - AluSx SINE Alu -29 283 1 427 297 14 22 chr9 129737848 129737986 -12533458 + MIR SINE MIR 86 222 -40 339 309 25 6 chr9 129738462 129738624 -12532820 + (TA)n Simple_repeat Simple_repeat 1 165 0 283 216 15 119 chr9 129738629 129738763 -12532681 + HAL1b LINE L1 1195 1314 -34 1606 87 0 0 chr9 129738926 129739134 -12532310 - L1PA13 LINE L1 -428 5735 5528 3305 79 2 9 chr9 129739135 129739591 -12531853 + L1PA13 LINE L1 5708 6160 -3 24 53 0 0 chr9 129739597 129739635 -12531809 + AT_rich Low_complexity Low_complexity 1 38 0 1057 260 74 87 chr9 129739661 129740269 -12531175 + L1MC4 LINE L1 4459 5058 -1088 2047 252 49 77 chr9 129740361 129741299 -12530145 - L1ME LINE L1 -5157 913 2 2061 102 13 13 chr9 129741327 129741631 -12529813 + AluSx SINE Alu 1 304 -8 1100 284 87 25 chr9 129741661 129742276 -12529168 + L1MC4 LINE L1 5183 5355 -791 2196 109 0 3 chr9 129742276 129742578 -12528866 + AluSq SINE Alu 1 301 -12 1100 284 87 25 chr9 129742578 129742630 -12528814 + L1MC4 LINE L1 5355 5402 -744 2334 89 0 3 chr9 129742892 129743205 -12528239 + AluSx SINE Alu 1 312 0 630 153 0 0 chr9 129743297 129743395 -12528049 - AluJo SINE Alu -177 135 38 479 172 43 0 chr9 129743402 129743495 -12527949 + L1ME LINE L1 502 598 -5472 1477 173 43 0 chr9 129743497 129743751 -12527693 - AluJo SINE Alu -47 265 1 359 243 45 79 chr9 129743806 129743983 -12527461 - L1ME4a LINE L1 -16 6105 5935 312 275 117 8 chr9 129743970 129744090 -12527354 + L1MC4 LINE L1 6612 6744 -1298 * 737 181 19 26 chr9 129744101 129744256 -12527188 + L1MA10 LINE L1 6180 6333 -1 487 208 42 0 chr9 129744602 129744698 -12526746 + MLT1A2 LTR MaLR 1 100 -274 493 263 157 8 chr9 129744710 129744965 -12526479 + L1MC4 LINE L1 7749 8041 -1 961 271 200 23 chr9 129745036 129745141 -12526303 + L2 LINE L2 2636 2721 -592 2227 104 3 0 chr9 129745141 129745450 -12525994 - AluSx SINE Alu -2 310 1 961 271 200 23 chr9 129745450 129745911 -12525533 + L2 LINE L2 2721 3308 -5 295 244 47 4 chr9 129747772 129747897 -12523547 - MIR SINE MIR -6 256 82 469 323 122 31 chr9 129748662 129748891 -12522553 - MIR SINE MIR 0 262 13 438 283 71 0 chr9 129748902 129749015 -12522429 - L2 LINE L2 -7 3265 3145 2021 103 21 0 chr9 129750405 129750687 -12520757 + AluSx SINE Alu 1 288 -24 743 229 22 54 chr9 129750835 129751058 -12520386 + L1ME3A LINE L1 5950 6165 -5 546 262 131 71 chr9 129752092 129752458 -12518986 + L2 LINE L2 2920 3307 -6 467 261 8 8 chr9 129752679 129752798 -12518646 + MIR SINE MIR 82 200 -62 599 241 35 7 chr9 129753255 129753400 -12518044 + MIR SINE MIR 49 197 -65 2367 73 3 0 chr9 129753534 129753834 -12517610 + AluSx SINE Alu 1 301 -11 256 211 70 14 chr9 129753893 129753964 -12517480 + MER116 DNA Mariner 2 76 -4 948 263 74 50 chr9 129754489 129754812 -12516632 + MLT1I LTR MaLR 75 405 -4 1568 192 10 3 chr9 129755008 129755136 -12516308 + AluJo SINE Alu 1 127 -185 320 0 25 0 chr9 129755136 129755176 -12516268 + (TA)n Simple_repeat Simple_repeat 2 42 0 1568 192 10 3 chr9 129755176 129755344 -12516100 + AluJo SINE Alu 127 299 -13 782 275 83 42 chr9 129755657 129756448 -12514996 + L1MC4a LINE L1 5112 5824 -297 234 0 0 0 chr9 129756563 129756589 -12514855 + (TGG)n Simple_repeat Simple_repeat 3 28 0 670 246 84 0 chr9 129756860 129757027 -12514417 - MLT1J2 LTR MaLR -4 446 266 742 167 107 7 chr9 129757045 129757195 -12514249 - MLT1J2 LTR MaLR -285 165 1 922 225 0 0 chr9 129757286 129757446 -12513998 + LTR39 LTR ERV1 619 778 -5 3223 206 62 3 chr9 129758201 129758889 -12512555 + MER45B DNA AcHobo 1 729 -311 1179 82 0 0 chr9 129758894 129759053 -12512391 + AluSq SINE Alu 145 303 -10 1458 165 50 24 chr9 129759058 129759355 -12512089 + MER45B DNA AcHobo 734 1038 -2 2009 122 3 0 chr9 129759362 129759650 -12511794 - AluSx SINE Alu -21 291 3 866 231 29 14 chr9 129759746 129759954 -12511490 + MIR SINE MIR 15 225 -37 2305 128 23 21 chr9 129760237 129760626 -12510818 - MLT1B LTR MaLR 0 390 1 228 35 0 0 chr9 129760698 129760727 -12510717 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 322 271 36 57 chr9 129761446 129761545 -12509899 - MIR SINE MIR -36 226 129 1982 134 3 0 chr9 129761545 129761837 -12509607 + AluJb SINE Alu 1 293 -19 322 271 36 57 chr9 129761837 129761877 -12509567 - MIR SINE MIR -133 129 90 2082 74 0 4 chr9 129761908 129762179 -12509265 - AluSq SINE Alu -41 272 3 298 312 58 13 chr9 129763064 129763218 -12508226 - L1MEd LINE L1 -5913 206 46 1699 188 39 33 chr9 129763237 129763599 -12507845 + MLT1A1 LTR MaLR 2 365 0 467 252 33 124 chr9 129763611 129763749 -12507695 + MIR SINE MIR 43 151 -111 1761 123 3 50 chr9 129763749 129764051 -12507393 - AluSx SINE Alu -24 288 1 467 252 33 124 chr9 129764051 129764154 -12507290 + MIR SINE MIR 151 262 0 385 234 10 72 chr9 129764131 129764242 -12507202 - MIR SINE MIR -61 147 69 * 390 269 112 28 chr9 129764247 129764477 -12506967 + MLT1G1 LTR MaLR 324 594 -1 2704 111 23 56 chr9 129764559 129764601 -12506843 - MSTA LTR MaLR 0 428 386 2310 79 30 0 chr9 129764601 129764904 -12506540 + AluSx SINE Alu 1 312 0 2704 111 23 56 chr9 129764904 129765304 -12506140 - MSTA LTR MaLR -42 386 1 670 259 212 25 chr9 129765305 129765807 -12505637 - L2 LINE L2 0 3313 2723 973 268 77 30 chr9 129765808 129766170 -12505274 - MLT1J2 LTR MaLR 0 450 72 836 136 8 8 chr9 129766691 129766823 -12504621 + FLAM_C SINE Alu 2 133 0 1080 179 0 0 chr9 129767134 129767307 -12504137 + FAM SINE Alu 1 173 -2 1000 239 65 13 chr9 129768178 129768487 -12502957 - L2 LINE L2 -807 2507 2183 2410 105 0 3 chr9 129768924 129769238 -12502206 + AluSq SINE Alu 1 313 0 4300 115 36 0 chr9 129769361 129770069 -12501375 + L1MC1 LINE L1 5184 5912 -421 4567 133 3 29 chr9 129770070 129770797 -12500647 - MER50 LTR ERV1 -23 711 4 2469 147 24 12 chr9 129770797 129771220 -12500224 + L1MC1 LINE L1 5906 6333 0 623 166 5 17 chr9 129772521 129772793 -12498651 + AluJo SINE Alu 4 340 0 358 344 19 12 chr9 129772870 129773030 -12498414 + MIR SINE MIR 90 250 -12 229 214 243 87 chr9 129773070 129773173 -12498271 - L2 LINE L2 -3 3269 3151 234 0 0 0 chr9 129773959 129773985 -12497459 + (T)n Simple_repeat Simple_repeat 1 26 0 385 183 88 15 chr9 129774006 129774138 -12497306 + MLT1J1 LTR MaLR 70 137 -309 302 302 159 12 chr9 129774132 129774377 -12497067 + MLT1L LTR MaLR 335 615 0 * 327 264 43 81 chr9 129774385 129774620 -12496824 - L1ME4a LINE L1 -69 6052 5827 482 279 81 0 chr9 129774629 129774790 -12496654 - L1ME4a LINE L1 -363 5758 5585 374 281 148 68 chr9 129774799 129775303 -12496141 - L2 LINE L2 -15 3298 2836 1846 170 0 10 chr9 129775303 129775633 -12495811 - AluJb SINE Alu 0 312 2 374 281 148 68 chr9 129775633 129775665 -12495779 - L2 LINE L2 -477 2836 2808 1727 179 28 3 chr9 129775665 129775956 -12495488 - AluJo SINE Alu -14 298 1 374 281 148 68 chr9 129775956 129776081 -12495363 - L2 LINE L2 -505 2808 2576 228 293 24 12 chr9 129776107 129776231 -12495213 + (TA)n Simple_repeat Simple_repeat 1 129 -40 2207 94 0 0 chr9 129776231 129776528 -12494916 + L1PA8 LINE L1 5868 6164 -8 228 293 24 12 chr9 129776528 129776570 -12494874 + (TA)n Simple_repeat Simple_repeat 129 169 0 1755 201 0 0 chr9 129776777 129777085 -12494359 - AluJo SINE Alu 0 312 5 357 320 17 21 chr9 129777158 129777392 -12494052 - L1M4 LINE L1 -1543 4603 4371 288 0 0 0 chr9 129777892 129777905 -12493539 + (TAA)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr9 129777905 129777937 -12493507 + (TAA)n Simple_repeat Simple_repeat 2 33 0 615 287 94 47 chr9 129777982 129778575 -12492869 - L1M4 LINE L1 -1804 4342 3722 604 177 7 61 chr9 129778648 129778795 -12492649 + MER103 DNA DNA 11 149 -17 25 31 0 0 chr9 129779991 129780023 -12491421 + GC_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr9 129780108 129780151 -12491293 + GC_rich Low_complexity Low_complexity 1 43 0 380 76 38 25 chr9 129780156 129780235 -12491209 + (CCG)n Simple_repeat Simple_repeat 3 82 0 31 68 0 0 chr9 129780260 129780319 -12491125 + GC_rich Low_complexity Low_complexity 1 59 0 234 62 0 0 chr9 129780355 129780387 -12491057 + (CCG)n Simple_repeat Simple_repeat 2 33 0 252 164 49 0 chr9 129780446 129780507 -12490937 + (CGGG)n Simple_repeat Simple_repeat 4 67 0 23 92 0 0 chr9 129780508 129780573 -12490871 + GC_rich Low_complexity Low_complexity 1 65 0 677 307 37 12 chr9 129781855 129782096 -12489348 + MIR SINE MIR 15 261 -1 1793 141 39 33 chr9 129782166 129782472 -12488972 - AluJo SINE Alu -4 308 1 308 326 37 51 chr9 129782507 129782722 -12488722 + MIR SINE MIR 6 217 -45 391 247 0 0 chr9 129782850 129782935 -12488509 - MER69 DNA AcHobo -1079 147 63 267 31 0 0 chr9 129783694 129783726 -12487718 + (CA)n Simple_repeat Simple_repeat 2 33 0 270 319 9 26 chr9 129783815 129783928 -12487516 - MER5A DNA MER1_type -22 167 57 * 391 296 0 22 chr9 129783837 129783972 -12487472 + MER5A DNA MER1_type 56 187 -2 4685 154 35 28 chr9 129783997 129784987 -12486457 - L1MB3 LINE L1 -14 6169 5171 386 274 55 34 chr9 129785007 129785153 -12486291 - MIR SINE MIR -83 179 31 218 310 35 11 chr9 129785748 129785835 -12485609 + MER5A DNA MER1_type 73 161 -28 216 298 0 0 chr9 129786197 129786254 -12485190 - L2 LINE L2 -3 3269 3213 231 280 0 0 chr9 129786322 129786372 -12485072 + (TG)n Simple_repeat Simple_repeat 1 50 0 2315 107 0 0 chr9 129786475 129786774 -12484670 - AluSg SINE Alu -11 299 1 2029 116 11 0 chr9 129786785 129787088 -12484356 - AluSx SINE Alu 0 309 4 423 56 0 0 chr9 129787233 129787287 -12484157 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 592 284 17 0 chr9 129787314 129787490 -12483954 + MER5A DNA MER1_type 6 184 -5 268 295 193 0 chr9 129787599 129787765 -12483679 - L2 LINE L2 -907 2407 2210 258 32 0 0 chr9 129790140 129790171 -12481273 + (CA)n Simple_repeat Simple_repeat 1 31 0 213 217 22 0 chr9 129791896 129791942 -12479502 + CT-rich Low_complexity Low_complexity 2 48 0 199 204 111 0 chr9 129792250 129792304 -12479140 - L2 LINE L2 -4 3268 3209 517 286 20 49 chr9 129793168 129793371 -12478073 - MIR SINE MIR -14 248 52 281 269 201 20 chr9 129794153 129794302 -12477142 + MIR3 SINE MIR 22 197 -11 1028 152 13 110 chr9 129795003 129795240 -12476204 - MER20 DNA MER1_type 0 219 6 2205 102 0 3 chr9 129797023 129797335 -12474109 + AluSx SINE Alu 1 311 0 21 0 0 0 chr9 129797436 129797457 -12473987 + AT_rich Low_complexity Low_complexity 1 21 0 522 232 95 30 chr9 129797530 129797698 -12473746 - L2 LINE L2 -19 3294 3116 1802 172 82 3 chr9 129798053 129798420 -12473024 - MSTD LTR MaLR 0 396 1 959 118 82 12 chr9 129802121 129802291 -12469153 - L1MD1 LINE L1 0 6636 6455 1702 227 82 40 chr9 129802291 129802816 -12468628 - MER74B LTR ERVL 0 622 76 4098 177 39 14 chr9 129802821 129803877 -12467567 - L1MD1 LINE L1 -162 6474 5391 1865 112 121 27 chr9 129803877 129804207 -12467237 - MSTC LTR MaLR -67 361 1 4090 201 41 67 chr9 129804207 129804873 -12466571 - L1MD1 LINE L1 -1419 5121 4498 2197 125 0 3 chr9 129804873 129805177 -12466267 - AluSg SINE Alu -7 303 1 4090 201 41 67 chr9 129805177 129805717 -12465727 - L1MD1 LINE L1 -2042 4498 3946 2137 176 35 46 chr9 129805719 129806178 -12465266 - L1MD1 LINE L1 -6085 455 2 261 279 0 25 chr9 129806732 129806811 -12464633 - L1ME4a LINE L1 -104 6017 5941 585 224 14 7 chr9 129806834 129806977 -12464467 + MIR SINE MIR 85 228 -34 344 275 154 47 chr9 129807049 129807599 -12463845 - L1ME4a LINE L1 -536 5628 5262 1174 174 60 0 chr9 129807814 129808032 -12463412 + L1MC4a LINE L1 7138 7368 -440 471 238 14 28 chr9 129808091 129808234 -12463210 + L1MC4 LINE L1 7902 8042 0 2045 123 23 3 chr9 129809173 129809482 -12461962 - L1MB5 LINE L1 -6 6168 5854 343 278 48 43 chr9 129809526 129809713 -12461731 - L1ME4a LINE L1 -1444 4702 4515 9986 207 59 67 chr9 129809825 129809998 -12461446 - L1ME1 LINE L1 0 6235 6062 2257 155 38 17 chr9 129809998 129810417 -12461027 + MSTA LTR MaLR 1 428 0 9986 207 59 67 chr9 129810417 129812451 -12458993 - L1ME1 LINE L1 -173 6062 4013 560 157 231 0 chr9 129812451 129812559 -12458885 - FLAM_C SINE Alu 0 133 1 9986 207 59 67 chr9 129812559 129813689 -12457755 - L1ME1 LINE L1 -2222 4013 2875 596 289 128 5 chr9 129813689 129813876 -12457568 - MER58C DNA MER1_type -3 212 3 9986 207 59 67 chr9 129813876 129815134 -12456310 - L1ME1 LINE L1 -3360 2875 1561 1092 168 22 6 chr9 129815142 129815321 -12456123 + AluJb SINE Alu 123 304 -8 766 284 70 3 chr9 129815330 129815657 -12455787 - L1ME1 LINE L1 -4842 1554 1206 372 410 10 5 chr9 129815968 129816173 -12455271 + L1M4 LINE L1 3449 3654 -2492 2435 91 0 0 chr9 129816294 129816592 -12454852 + AluSx SINE Alu 1 298 -14 238 374 101 0 chr9 129816847 129817026 -12454418 + L2 LINE L2 2590 2786 -528 214 214 71 36 chr9 129817032 129817088 -12454356 + L2 LINE L2 3214 3271 -1 275 228 16 114 chr9 129817350 129817473 -12453971 + L2 LINE L2 3158 3268 -4 180 77 0 0 chr9 129818127 129818153 -12453291 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2409 59 0 3 chr9 129818155 129818441 -12453003 - AluY SINE Alu -26 285 1 1994 83 0 58 chr9 129818443 129818720 -12452724 - AluY SINE Alu -16 295 35 2230 117 0 26 chr9 129818722 129819030 -12452414 - AluSx SINE Alu -12 300 1 303 347 65 24 chr9 129819183 129819307 -12452137 - L2 LINE L2 -1 3271 3143 312 263 149 50 chr9 129819748 129820010 -12451434 - L1ME4a LINE L1 -4 6117 5830 248 282 189 19 chr9 129821066 129821256 -12450188 - MIR SINE MIR -32 230 7 515 284 129 22 chr9 129821491 129821716 -12449728 - MIR SINE MIR -12 250 2 22 0 0 0 chr9 129821907 129821929 -12449515 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 129822102 129822123 -12449321 + AT_rich Low_complexity Low_complexity 1 21 0 270 190 0 25 chr9 129822547 129822626 -12448818 - MER53 DNA DNA -88 101 25 * 303 208 0 14 chr9 129822568 129822640 -12448804 + MER53 DNA DNA 119 189 0 483 302 84 14 chr9 129822930 129823034 -12448410 - L1ME3A LINE L1 -128 5993 5898 2377 104 10 0 chr9 129823034 129823342 -12448102 - AluSp SINE Alu -2 311 1 483 302 84 14 chr9 129823342 129823596 -12447848 - L1ME3A LINE L1 -223 5898 5618 567 262 65 127 chr9 129823720 129823769 -12447675 - L1ME3A LINE L1 -821 5325 5275 2269 113 3 0 chr9 129823769 129824071 -12447373 - AluSx SINE Alu -9 303 1 567 262 65 127 chr9 129824071 129824495 -12446949 - L1ME3A LINE L1 -871 5275 4881 550 264 52 92 chr9 129825198 129825255 -12446189 - MIR SINE MIR -10 252 194 3563 182 27 23 chr9 129825255 129825998 -12445446 - L1MB7 LINE L1 -9 6175 5430 550 264 52 92 chr9 129825998 129826190 -12445254 - MIR SINE MIR -68 194 13 274 308 63 13 chr9 129827194 129827353 -12444091 - L1ME4a LINE L1 0 6121 5955 207 381 71 0 chr9 129827563 129827689 -12443755 + L2 LINE L2 2846 2980 -333 1777 260 151 68 chr9 129828282 129829910 -12441534 - HAL1 LINE L1 0 2507 744 373 310 133 73 chr9 129829931 129830563 -12440881 - HAL1 LINE L1 -1821 686 17 208 338 0 0 chr9 129830640 129830708 -12440736 + (TG)n Simple_repeat Simple_repeat 1 68 0 491 291 24 0 chr9 129830982 129831109 -12440335 - L2 LINE L2 0 3272 3143 458 61 15 0 chr9 129831985 129832051 -12439393 + (TC)n Simple_repeat Simple_repeat 2 68 0 256 167 19 0 chr9 129832587 129832641 -12438803 + HsTC2 DNA Tc2 31 85 -1813 191 244 44 0 chr9 129835277 129835322 -12436122 - MIR SINE MIR -76 132 86 44 20 0 0 chr9 129835434 129835485 -12435959 + AT_rich Low_complexity Low_complexity 1 51 0 2137 108 0 14 chr9 129837935 129838221 -12433223 - AluSx SINE Alu -29 283 2 1961 156 7 7 chr9 129838224 129838526 -12432918 - AluJb SINE Alu -10 302 1 439 320 56 15 chr9 129838578 129838775 -12432669 - L2 LINE L2 0 3313 3109 650 291 38 57 chr9 129841078 129841343 -12430101 - MIR SINE MIR -1 261 2 3819 164 37 45 chr9 129841407 129842226 -12429218 - L1MB8 LINE L1 -15 6163 5352 771 267 39 5 chr9 129843612 129843818 -12427626 - MIR SINE MIR -14 248 36 743 233 11 72 chr9 129843884 129844068 -12427376 + L1MC5 LINE L1 6972 7137 -824 2272 93 24 0 chr9 129844068 129844359 -12427085 + AluSg SINE Alu 1 298 -12 743 233 11 72 chr9 129844359 129844436 -12427008 + L1MC5 LINE L1 7137 7217 -744 237 254 63 0 chr9 129844594 129844657 -12426787 + L1MC5 LINE L1 7302 7368 -593 373 266 83 42 chr9 129844819 129845108 -12426336 + L1MC5 LINE L1 7631 7931 -30 455 297 228 19 chr9 129845915 129846279 -12425165 - L2 LINE L2 -31 3282 2843 260 314 50 16 chr9 129846401 129846522 -12424922 + L2 LINE L2 3143 3267 -5 569 293 81 47 chr9 129846537 129846946 -12424498 - MLT1K LTR MaLR -8 580 158 190 277 0 75 chr9 129851512 129851606 -12419838 + L2 LINE L2 3009 3095 -177 284 270 184 0 chr9 129851760 129851923 -12419521 - L1ME4a LINE L1 -2 6119 5927 518 328 104 25 chr9 129853040 129853397 -12418047 + L3 LINE CR1 519 903 -674 388 238 61 127 chr9 129853659 129853840 -12417604 + L3 LINE CR1 1304 1472 -105 1959 144 6 39 chr9 129855746 129856058 -12415386 + AluJb SINE Alu 2 303 -9 844 239 14 54 chr9 129857275 129857340 -12414104 - MIR SINE MIR -13 249 183 2398 95 7 3 chr9 129857340 129857644 -12413800 - AluSx SINE Alu -7 305 1 844 239 14 54 chr9 129857644 129857800 -12413644 - MIR SINE MIR -79 183 37 204 167 0 0 chr9 129859223 129859271 -12412173 + (TTA)n Simple_repeat Simple_repeat 2 49 0 333 85 0 0 chr9 129859441 129859488 -12411956 - Alu SINE Alu -9 292 246 180 299 58 35 chr9 129859489 129859576 -12411868 - MIR SINE MIR -76 132 44 423 0 0 0 chr9 129862689 129862736 -12408708 + (TG)n Simple_repeat Simple_repeat 2 48 0 477 276 92 17 chr9 129862755 129862929 -12408515 + MIR SINE MIR 70 256 -6 288 0 0 0 chr9 129863531 129863563 -12407881 + (TG)n Simple_repeat Simple_repeat 1 32 0 362 239 110 18 chr9 129863770 129863879 -12407565 + MIR SINE MIR 58 176 -86 305 247 47 35 chr9 129864179 129864264 -12407180 + L2 LINE L2 3175 3260 -12 2414 100 0 3 chr9 129864265 129864574 -12406870 - AluSg SINE Alu 0 310 3 233 247 75 54 chr9 129864709 129864802 -12406642 + L2 LINE L2 3199 3293 -20 253 233 70 0 chr9 129866345 129866431 -12405013 - L1ME4a LINE L1 -367 5795 5704 253 320 78 16 chr9 129867012 129867140 -12404304 - HAL1b LINE L1 -803 545 410 315 0 0 0 chr9 129867208 129867243 -12404201 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 29 0 0 chr9 129868211 129868246 -12403198 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr9 129868273 129868296 -12403148 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 881 119 60 8 chr9 129868296 129868419 -12403025 - AluJb SINE Alu -179 133 1 336 289 31 6 chr9 129868766 129868925 -12402519 - L1ME4a LINE L1 -277 5844 5682 357 269 289 9 chr9 129869093 129869532 -12401912 - L2 LINE L2 -16 3297 2735 379 293 24 0 chr9 129870090 129870213 -12401231 + MIR SINE MIR 103 228 -34 206 235 8 134 chr9 129870898 129871017 -12400427 + L3 LINE CR1 846 949 -628 * 477 346 63 61 chr9 129871002 129871447 -12399997 - L2 LINE L2 -1 3271 2826 194 265 48 12 chr9 129872143 129872226 -12399218 + L2 LINE L2 2964 3049 -223 723 207 7 0 chr9 129872728 129872868 -12398576 + MER45A DNA AcHobo 36 176 -2 477 236 34 47 chr9 129873130 129873278 -12398166 + MER5A DNA MER1_type 21 166 -23 1553 133 151 32 chr9 129873954 129874232 -12397212 - AluYa5 SINE Alu 0 311 1 325 261 148 44 chr9 129877807 129878010 -12393434 - L3 LINE CR1 -25 1552 1329 246 234 131 96 chr9 129878213 129878516 -12392928 + L1ME4a LINE L1 5633 5957 -164 848 188 30 18 chr9 129878516 129878681 -12392763 + FAM SINE Alu 1 167 -8 246 234 131 96 chr9 129878681 129878805 -12392639 + L1ME4a LINE L1 5957 6075 -46 1485 206 40 3 chr9 129879281 129879607 -12391837 + MER58B DNA MER1_type 4 341 0 201 121 0 0 chr9 129881338 129881371 -12390073 + (T)n Simple_repeat Simple_repeat 1 33 0 243 227 386 0 chr9 129884164 129884252 -12387192 - MER91C DNA MER1_type 0 140 19 208 255 61 41 chr9 129885129 129885227 -12386217 + MIR SINE MIR 35 134 -128 587 288 93 13 chr9 129885938 129886174 -12385270 - MIR SINE MIR 0 262 8 398 198 17 28 chr9 129886474 129886612 -12384832 + MIR SINE MIR 73 251 -11 209 231 48 135 chr9 129888266 129888370 -12383074 + L2 LINE L2 3168 3262 -10 230 209 0 30 chr9 129895846 129895913 -12375531 - MLT1I LTR MaLR 0 409 345 533 225 20 33 chr9 129896004 129896155 -12375289 - MLT1I LTR MaLR -104 305 157 256 310 119 37 chr9 129896540 129896683 -12374761 + MIR3 SINE MIR 23 176 -32 435 211 139 12 chr9 129896899 129897065 -12374379 - L1ME4a LINE L1 0 6121 5935 904 226 136 10 chr9 129897106 129897416 -12374028 - L1ME1 LINE L1 -5 6161 5813 282 273 130 57 chr9 129897502 129897875 -12373569 - L1ME1 LINE L1 -305 5816 5355 1925 313 124 55 chr9 129898025 129898688 -12372756 - L1ME1 LINE L1 -1014 5132 4516 2266 105 13 0 chr9 129898688 129898992 -12372452 - AluSx SINE Alu -4 308 1 1925 313 124 55 chr9 129898992 129899050 -12372394 - L1ME1 LINE L1 -1630 4516 4463 815 156 0 15 chr9 129899050 129899185 -12372259 - FLAM_C SINE Alu 0 133 1 1925 313 124 55 chr9 129899185 129900324 -12371120 - L1ME1 LINE L1 -1683 4463 3051 2312 119 0 6 chr9 129900324 129900636 -12370808 - AluSx SINE Alu -2 310 1 1925 313 124 55 chr9 129900636 129901026 -12370418 - L1ME1 LINE L1 -3095 3051 2689 2720 127 31 12 chr9 129901870 129902288 -12369156 - MSTB LTR MaLR 0 426 1 458 187 307 0 chr9 129903174 129903324 -12368120 - MIR SINE MIR 0 262 67 528 272 94 6 chr9 129904018 129904198 -12367246 - MIR SINE MIR -21 241 46 242 293 113 53 chr9 129904579 129904712 -12366732 + MIR SINE MIR 103 243 -19 318 333 136 14 chr9 129906376 129906523 -12364921 + MIR SINE MIR 48 212 -50 215 343 15 30 chr9 129907084 129907218 -12364226 + (CATG)n Simple_repeat Simple_repeat 1 132 0 389 0 59 0 chr9 129908546 129908597 -12362847 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 2246 75 0 4 chr9 129908597 129908875 -12362569 - AluSc SINE Alu -32 277 1 1835 173 0 10 chr9 129908876 129909177 -12362267 - AluJb SINE Alu -14 298 1 2322 106 6 3 chr9 129909269 129909580 -12361864 - AluSq SINE Alu -1 312 1 31 0 0 0 chr9 129910899 129910930 -12360514 + AT_rich Low_complexity Low_complexity 1 31 0 241 308 41 48 chr9 129913634 129913780 -12357664 + MIR3 SINE MIR 63 207 -1 740 246 28 42 chr9 129914143 129914358 -12357086 + MIR SINE MIR 41 252 -10 224 309 63 71 chr9 129917663 129917932 -12353512 - L2 LINE L2 -339 2975 2709 334 286 161 6 chr9 129918144 129918312 -12353132 + MIR SINE MIR 10 203 -59 187 178 133 0 chr9 129918635 129918678 -12352766 - MIR3 SINE MIR -7 201 153 652 184 7 41 chr9 129918678 129918825 -12352619 + MER5B DNA MER1_type 1 142 -36 244 314 29 0 chr9 129918941 129919011 -12352433 - L2 LINE L2 -2 3311 3240 220 316 184 11 chr9 129919182 129919356 -12352088 - MIR SINE MIR -54 208 5 1020 259 100 30 chr9 129919436 129919907 -12351537 - MLT1H LTR MaLR -3 546 43 2109 112 0 20 chr9 129920219 129920523 -12350921 - AluJb SINE Alu -14 298 1 1274 213 13 13 chr9 129920651 129920952 -12350492 - L1MC4 LINE L1 -529 7513 7213 1528 236 112 26 chr9 129920979 129921508 -12349936 - L1MC4 LINE L1 -925 7117 6544 799 336 57 73 chr9 129921522 129922273 -12349171 + L2 LINE L2 2110 2848 -466 926 184 0 16 chr9 129922398 129922583 -12348861 + AluJo SINE Alu 117 298 -14 303 315 125 27 chr9 129923270 129923454 -12347990 + MIR SINE MIR 58 259 -3 279 0 0 0 chr9 129924036 129924067 -12347377 + (TG)n Simple_repeat Simple_repeat 2 32 0 472 309 122 0 chr9 129924331 129924519 -12346925 - MIR SINE MIR -3 259 49 403 281 106 24 chr9 129924566 129924788 -12346656 - MIR SINE MIR -12 250 3 24 0 0 0 chr9 129926346 129926370 -12345074 + AT_rich Low_complexity Low_complexity 1 24 0 373 335 27 21 chr9 129926463 129926696 -12344748 - MIR SINE MIR -21 241 7 2438 128 31 72 chr9 129926777 129927223 -12344221 - MSTA LTR MaLR 0 428 1 183 438 11 0 chr9 129927902 129927991 -12343453 - L3 LINE CR1 -18 1559 1470 192 309 91 9 chr9 129927994 129928104 -12343340 - L3 LINE CR1 -285 1292 1174 1117 368 144 6 chr9 129928199 129928990 -12342454 - L3 LINE CR1 -380 1197 298 760 170 0 37 chr9 129929128 129929263 -12342181 + AluJb SINE Alu 1 130 -182 273 273 47 6 chr9 129929889 129929985 -12341459 + (TA)n Simple_repeat Simple_repeat 2 93 -87 2447 53 0 3 chr9 129929985 129930287 -12341157 + AluY SINE Alu 2 302 -9 273 273 47 6 chr9 129930287 129930350 -12341094 + (TA)n Simple_repeat Simple_repeat 93 171 -9 2289 163 77 20 chr9 129930350 129930755 -12340689 - MSTA LTR MaLR 0 428 1 273 273 47 6 chr9 129930755 129930766 -12340678 + (TA)n Simple_repeat Simple_repeat 171 180 0 2616 110 6 6 chr9 129930800 129931164 -12340280 - THE1B LTR MaLR 0 364 1 935 155 32 0 chr9 129931402 129931557 -12339887 + L1MB5 LINE L1 5998 6157 -17 233 250 43 69 chr9 129932532 129932648 -12338796 + MIR SINE MIR 32 144 -64 223 182 68 0 chr9 129934252 129934296 -12337148 - MIR SINE MIR -196 66 20 206 329 29 79 chr9 129934937 129935077 -12336367 + L2 LINE L2 3122 3254 -18 195 341 156 7 chr9 129940025 129940160 -12331284 - MIR SINE MIR -18 244 90 236 344 32 24 chr9 129940535 129940660 -12330784 + MIR SINE MIR 105 230 -32 2049 127 0 22 chr9 129940867 129941181 -12330263 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr9 129941734 129941755 -12329689 + (A)n Simple_repeat Simple_repeat 1 21 0 367 325 26 0 chr9 129945610 129945761 -12325683 - L1MC4a LINE L1 -1973 5835 5681 1311 359 156 22 chr9 129945799 129945949 -12325495 - L1MC4a LINE L1 -747 5399 5270 1786 163 3 10 chr9 129945949 129946249 -12325195 + AluJo SINE Alu 1 298 -14 1311 359 156 22 chr9 129946249 129947310 -12324134 - L1MC4a LINE L1 -876 5270 4206 355 316 13 0 chr9 129947498 129947653 -12323791 - L1MC4a LINE L1 -2149 3997 3841 2023 157 0 0 chr9 129948299 129948611 -12322833 + AluJb SINE Alu 1 312 0 492 251 68 124 chr9 129948788 129949230 -12322214 - Charlie8 DNA MER1_type -1954 463 47 672 184 4 14 chr9 129949574 129949857 -12321587 + (CCCA)n Simple_repeat Simple_repeat 1 279 0 250 258 75 11 chr9 129949989 129950082 -12321362 - L2 LINE L2 -221 3051 2953 244 321 75 9 chr9 129950451 129950557 -12320887 - L2 LINE L2 -14 3258 3146 224 237 227 10 chr9 129951234 129951331 -12320113 - MER5A DNA MER1_type -4 185 68 255 296 45 0 chr9 129952045 129952133 -12319311 + MIR SINE MIR 62 153 -55 230 336 114 71 chr9 129952263 129952403 -12319041 + MER5B DNA MER1_type 24 169 -9 489 255 188 0 chr9 129953891 129954040 -12317404 + MER5A DNA MER1_type 7 183 -6 185 360 75 19 chr9 129954606 129954767 -12316677 - MIR SINE MIR -3 259 90 318 50 0 0 chr9 129959044 129959084 -12312360 + (TG)n Simple_repeat Simple_repeat 1 40 0 233 322 151 26 chr9 129961212 129961364 -12310080 + MIR SINE MIR 48 218 -44 637 312 118 72 chr9 129961877 129962709 -12308735 + L2 LINE L2 2264 3172 -100 2371 93 0 10 chr9 129962709 129963022 -12308422 - AluSg SINE Alu 0 310 1 637 312 118 72 chr9 129963022 129963124 -12308320 + L2 LINE L2 3172 3268 -4 188 289 22 44 chr9 129963269 129963359 -12308085 + L2 LINE L2 3167 3254 -18 2013 106 23 13 chr9 129963618 129963919 -12307525 - AluSq SINE Alu -9 304 1 727 211 18 29 chr9 129964318 129964489 -12306955 + MER5B DNA MER1_type 5 173 -5 2260 95 0 19 chr9 129964497 129964813 -12306631 + AluSg SINE Alu 1 310 0 545 267 148 32 chr9 129965101 129965527 -12305917 + L1M4 LINE L1 2489 2865 -3281 1685 156 13 48 chr9 129965527 129965841 -12305603 + AluJo SINE Alu 1 303 -9 545 267 148 32 chr9 129965841 129966126 -12305318 + L1M4 LINE L1 2865 3282 -2864 2415 72 7 0 chr9 129966229 129966535 -12304909 + AluSp SINE Alu 3 310 -3 318 273 161 14 chr9 129966839 129966982 -12304462 - MIR SINE MIR -79 183 20 26 30 0 0 chr9 129967767 129967800 -12303644 + GC_rich Low_complexity Low_complexity 1 33 0 262 368 80 12 chr9 129968056 129968219 -12303225 + MIR SINE MIR 15 188 -74 392 280 121 32 chr9 129968247 129968404 -12303040 + MIR SINE MIR 89 259 -3 397 278 0 43 chr9 129969279 129969394 -12302050 + MIR SINE MIR 50 159 -103 386 239 65 76 chr9 129972232 129972416 -12299028 - MIR SINE MIR -4 258 77 348 192 0 14 chr9 129972686 129972759 -12298685 - L1MC4a LINE L1 -1895 5913 5842 285 174 0 139 chr9 129972805 129972891 -12298553 + MER116 DNA Mariner 6 79 -1 411 245 105 28 chr9 129972891 129973034 -12298410 - L1MC4a LINE L1 -2025 5783 5630 266 321 83 9 chr9 129973036 129973145 -12298299 + MIR3 SINE MIR 77 193 -15 219 114 0 0 chr9 129974344 129974379 -12297065 + (A)n Simple_repeat Simple_repeat 1 35 0 198 239 90 0 chr9 129975509 129975576 -12295868 + MIR SINE MIR 65 137 -125 195 129 0 0 chr9 129976692 129976723 -12294721 + (T)n Simple_repeat Simple_repeat 1 31 0 1819 196 10 3 chr9 129977261 129977649 -12293795 - L1MB3 LINE L1 0 6183 5793 490 224 119 60 chr9 129978531 129978799 -12292645 + L1MC4 LINE L1 7759 8042 0 2175 142 0 0 chr9 129979223 129979533 -12291911 + AluSx SINE Alu 1 310 -2 247 278 33 22 chr9 129979544 129979634 -12291810 + L2 LINE L2 3204 3294 -19 180 0 0 0 chr9 129982887 129982907 -12288537 + (A)n Simple_repeat Simple_repeat 1 20 0 202 219 0 0 chr9 129983228 129983269 -12288175 + GA-rich Low_complexity Low_complexity 3 43 0 674 153 34 129 chr9 129983880 129983962 -12287482 + MER53 DNA DNA 1 89 -100 2167 129 20 0 chr9 129983962 129984264 -12287180 - AluSx SINE Alu -4 308 1 674 153 34 129 chr9 129984264 129984390 -12287054 + MER53 DNA DNA 89 189 0 316 275 55 0 chr9 129984505 129984603 -12286841 + MIR3 SINE MIR 57 160 -48 188 317 73 0 chr9 129984697 129984779 -12286665 - MIR3 SINE MIR -43 165 78 442 320 95 12 chr9 129985352 129985605 -12285839 - L3b LINE CR1 -197 1386 1113 284 265 44 0 chr9 129985907 129985975 -12285469 + MIR SINE MIR 83 153 -55 192 250 0 60 chr9 129988664 129988748 -12282696 + L2 LINE L2 2973 3051 -221 2226 126 3 0 chr9 129988873 129989183 -12282261 + AluSx SINE Alu 1 311 -1 591 130 20 0 chr9 129989210 129989310 -12282134 + AluSg/x SINE Alu 208 309 -1 470 255 121 7 chr9 129989325 129989474 -12281970 - MIR SINE MIR -12 250 85 1836 199 45 14 chr9 129989557 129989980 -12281464 - MER63B DNA MER1_type 0 436 1 266 258 0 0 chr9 129990005 129990067 -12281377 + L2 LINE L2 3199 3260 -12 799 288 186 19 chr9 129990603 129990713 -12280731 - L2 LINE L2 -42 3271 3181 257 75 25 0 chr9 129990713 129990753 -12280691 + (TG)n Simple_repeat Simple_repeat 2 42 0 799 288 186 19 chr9 129990753 129990775 -12280669 - L2 LINE L2 -132 3181 3164 491 62 12 12 chr9 129990775 129990855 -12280589 - MADE1 DNA Mariner 0 80 1 799 288 186 19 chr9 129990855 129991319 -12280125 - L2 LINE L2 -149 3164 2592 435 321 86 51 chr9 129991318 129991625 -12279819 + L2 LINE L2 2919 3240 -32 * 1986 145 0 20 chr9 129991625 129991951 -12279493 + AluSx SINE Alu 1 312 0 435 321 86 51 chr9 129991951 129991979 -12279465 + L2 LINE L2 3240 3266 -6 208 342 0 40 chr9 129992051 129992127 -12279317 - L2 LINE L2 -57 3215 3143 2106 167 0 0 chr9 129992552 129992863 -12278581 + AluJb SINE Alu 1 311 -1 2266 110 3 0 chr9 129992986 129993286 -12278158 + AluSq SINE Alu 1 301 -12 814 173 0 20 chr9 129993428 129993578 -12277866 - Tigger7 DNA MER2_type -2 2489 2343 229 105 26 0 chr9 129993569 129993607 -12277837 - Tigger7 DNA MER2_type -202 348 310 * 222 152 91 0 chr9 129993736 129993802 -12277642 - L2 LINE L2 -195 3077 3006 237 296 44 97 chr9 129993912 129994118 -12277326 + L2 LINE L2 2889 3083 -189 2028 108 42 11 chr9 129994135 129994421 -12277023 - AluSx SINE Alu -17 295 1 612 247 251 4 chr9 129995102 129995345 -12276099 + MLT1H LTR MaLR 247 549 0 895 145 0 0 chr9 129995394 129995532 -12275912 + FRAM SINE Alu 38 175 -1 273 207 43 128 chr9 129995536 129995605 -12275839 + L1MC4a LINE L1 5814 5887 -1921 2350 85 7 10 chr9 129995605 129995910 -12275534 + AluSg SINE Alu 1 304 -6 273 207 43 128 chr9 129995910 129995930 -12275514 + L1MC4a LINE L1 5887 5907 -1901 2265 101 3 13 chr9 129995930 129996237 -12275207 + AluSx SINE Alu 1 304 -8 273 207 43 128 chr9 129996237 129996310 -12275134 + L1MC4a LINE L1 5907 5963 -1845 2592 62 0 0 chr9 129996489 129996793 -12274651 - AluY SINE Alu -7 304 1 605 289 6 0 chr9 129997759 129997915 -12273529 + MER45A DNA AcHobo 2 158 -20 866 81 0 0 chr9 129998364 129998475 -12272969 + AluY SINE Alu 1 111 -200 357 265 34 54 chr9 129998729 129998876 -12272568 - L2 LINE L2 -54 3259 3116 232 268 0 92 chr9 129999003 129999145 -12272299 + MIR SINE MIR 60 188 -74 234 191 0 0 chr9 129999441 129999488 -12271956 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 213 39 0 0 chr9 129999492 129999518 -12271926 + (A)n Simple_repeat Simple_repeat 1 26 0 911 127 8 15 chr9 129999541 129999675 -12271769 + AluSq/x SINE Alu 1 133 -179 5700 153 33 11 chr9 129999690 130000873 -12270571 + L1MC2 LINE L1 5133 6343 -1 2281 96 7 7 chr9 130000921 130001222 -12270222 + AluSp SINE Alu 1 301 -12 1252 124 31 0 chr9 130001727 130001952 -12269492 - L1 LINE L1 -1657 4489 4258 296 267 14 0 chr9 130002104 130002183 -12269261 + MIR SINE MIR 81 161 -47 247 234 13 13 chr9 130002266 130002343 -12269101 - MIR SINE MIR -12 250 174 572 213 0 0 chr9 130002347 130002441 -12269003 - MER81 DNA DNA -1 113 20 297 167 91 0 chr9 130002454 130002520 -12268924 - MIR SINE MIR -111 151 80 329 306 62 14 chr9 130003112 130003256 -12268188 - MIR SINE MIR -110 152 2 188 284 122 34 chr9 130003263 130003411 -12268033 + MIR SINE MIR 76 236 -26 515 284 111 0 chr9 130003528 130003718 -12267726 - MIR SINE MIR -13 249 39 204 270 44 88 chr9 130004123 130004349 -12267095 - L2 LINE L2 -68 3204 2989 715 285 216 19 chr9 130005996 130006632 -12264812 - L2 LINE L2 -14 3299 2524 242 337 0 0 chr9 130006878 130006964 -12264480 - MIR SINE MIR -10 252 167 1188 181 18 57 chr9 130007093 130007244 -12264200 + L1MD2 LINE L1 5795 5933 -426 1947 137 7 14 chr9 130007244 130007562 -12263882 - AluSx SINE Alu 0 316 1 1188 181 18 57 chr9 130007562 130007691 -12263753 + L1MD2 LINE L1 5933 6065 -294 1024 181 32 5 chr9 130007793 130008009 -12263435 - MLT2B1 LTR ERVL -295 225 4 32107 142 41 41 chr9 130008011 130008447 -12262997 - ERVL-B1 LTR ERVL -6 5758 5324 2297 104 0 0 chr9 130008447 130008735 -12262709 + AluSq SINE Alu 2 289 -24 32107 142 41 41 chr9 130008735 130012634 -12258810 - ERVL-B1 LTR ERVL -440 5324 1427 1349 184 17 109 chr9 130012634 130013036 -12258408 - MLT1A1 LTR MaLR 0 365 1 32107 142 41 41 chr9 130013036 130013122 -12258322 - ERVL-B1 LTR ERVL -4337 1427 1343 2172 128 6 13 chr9 130013122 130013434 -12258010 - AluSx SINE Alu -2 310 1 32107 142 41 41 chr9 130013434 130013456 -12257988 - ERVL-B1 LTR ERVL -4421 1343 1323 2467 99 0 3 chr9 130013456 130013768 -12257676 - AluSx SINE Alu -1 311 1 231 36 0 0 chr9 130013770 130013798 -12257646 + (TA)n Simple_repeat Simple_repeat 2 29 0 2174 70 38 28 chr9 130013798 130014085 -12257359 - AluY SINE Alu -21 290 1 293 116 130 0 chr9 130014085 130014154 -12257290 + Charlie5 DNA MER1_type 2471 2548 -64 2062 93 0 19 chr9 130014154 130014422 -12257022 - AluSq SINE Alu -50 263 1 32107 142 41 41 chr9 130014422 130015634 -12255810 - ERVL-B1 LTR ERVL -4440 1324 25 2052 59 0 0 chr9 130015635 130015872 -12255572 + AluY SINE Alu 1 237 -74 26 0 0 0 chr9 130015927 130015953 -12255491 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 130016228 130016249 -12255195 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr9 130016357 130016384 -12255060 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2149 106 7 0 chr9 130016386 130016698 -12254746 + AluSx SINE Alu 1 314 0 247 273 74 25 chr9 130016829 130016950 -12254494 + L1ME4a LINE L1 5974 6100 -21 226 337 72 0 chr9 130017147 130017230 -12254214 + MER5A DNA MER1_type 31 119 -70 180 188 62 0 chr9 130017647 130017695 -12253749 - MIR3 SINE MIR -49 159 109 236 324 35 49 chr9 130018556 130018606 -12252838 + MIR SINE MIR 106 155 -107 1729 92 124 72 chr9 130018606 130018808 -12252636 - THE1B LTR MaLR 0 364 135 2514 90 0 0 chr9 130018808 130019118 -12252326 + AluY SINE Alu 1 310 -1 1729 92 124 72 chr9 130019118 130019261 -12252183 - THE1B LTR MaLR -229 135 1 236 324 35 49 chr9 130019261 130019352 -12252092 + MIR SINE MIR 155 245 -17 224 170 0 43 chr9 130019363 130019410 -12252034 + C-rich Low_complexity Low_complexity 5 49 0 1823 166 23 0 chr9 130020779 130021081 -12250363 + AluJb SINE Alu 4 312 0 856 176 0 0 chr9 130021097 130021228 -12250216 + FLAM_A SINE Alu 1 131 -2 216 297 54 0 chr9 130021321 130021395 -12250049 + L2 LINE L2 2984 3061 -252 1675 152 22 4 chr9 130021632 130021932 -12249512 - AluSx SINE Alu 0 305 1 547 128 13 0 chr9 130022111 130022189 -12249255 - AluSq/x SINE Alu -196 117 39 296 296 0 0 chr9 130022196 130022277 -12249167 + LTR16C LTR ERVL 408 488 -3 200 333 0 0 chr9 130022448 130022508 -12248936 + L2 LINE L2 3204 3263 -9 1637 133 56 4 chr9 130022666 130022936 -12248508 + AluJb SINE Alu 1 284 -28 192 160 0 0 chr9 130022936 130022981 -12248463 + (TA)n Simple_repeat Simple_repeat 2 46 0 1661 151 0 75 chr9 130022991 130023125 -12248319 + AluSx SINE Alu 2 145 -187 2256 115 0 0 chr9 130023125 130023437 -12248007 + AluSx SINE Alu 1 312 0 1661 151 0 75 chr9 130023437 130023656 -12247788 + AluSx SINE Alu 145 332 0 2047 113 10 13 chr9 130023666 130023975 -12247469 + AluSx SINE Alu 1 308 -4 925 206 44 5 chr9 130024499 130024703 -12246741 + MER20 DNA MER1_type 2 213 -6 404 306 83 21 chr9 130024779 130024972 -12246472 + MIR SINE MIR 46 250 -12 1894 196 49 29 chr9 130024982 130025430 -12246014 + MLT1C LTR MaLR 6 462 -5 352 288 34 6 chr9 130026473 130026596 -12244848 + MIR SINE MIR 15 139 -69 373 326 54 16 chr9 130026686 130026870 -12244574 - MIR SINE MIR -6 256 66 831 117 8 0 chr9 130026878 130026998 -12244446 - FRAM SINE Alu -11 165 45 183 42 0 0 chr9 130028145 130028169 -12243275 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 618 272 0 28 chr9 130028725 130028905 -12242539 - MIR SINE MIR -70 192 18 2194 84 19 22 chr9 130028911 130029222 -12242222 - AluSx SINE Alu -2 310 1 250 365 100 6 chr9 130029361 130029531 -12241913 - MIR SINE MIR 0 262 77 220 337 43 0 chr9 130030146 130030238 -12241206 + MIR SINE MIR 20 115 -147 388 277 109 0 chr9 130030299 130030418 -12241026 - MIR SINE MIR -78 184 53 222 91 0 0 chr9 130030593 130030626 -12240818 - MIR SINE MIR -113 149 117 1699 150 46 0 chr9 130030784 130031064 -12240380 + AluJb SINE Alu 1 293 -19 2210 89 7 0 chr9 130031064 130031357 -12240087 + AluSp SINE Alu 1 295 -18 528 134 0 12 chr9 130031498 130031580 -12239864 - FRAM SINE Alu -62 114 34 2254 110 0 0 chr9 130031837 130032138 -12239306 - AluSx SINE Alu -11 301 1 334 304 50 116 chr9 130032160 130032517 -12238927 - L2 LINE L2 -8 3264 2940 2110 128 3 0 chr9 130032517 130032821 -12238623 + AluSx SINE Alu 1 305 -7 334 304 50 116 chr9 130032821 130032904 -12238540 - L2 LINE L2 -332 2940 2853 208 326 158 10 chr9 130032930 130033126 -12238318 - L2 LINE L2 -465 2849 2625 200 225 0 0 chr9 130033214 130033254 -12238190 + GA-rich Low_complexity Low_complexity 1 40 0 302 299 35 40 chr9 130033617 130033791 -12237653 - L2 LINE L2 -1465 1849 1677 202 366 204 5 chr9 130034063 130034254 -12237190 + MIR SINE MIR 26 254 -8 196 351 0 27 chr9 130034274 130034348 -12237096 - L2 LINE L2 -557 2757 2686 230 281 0 0 chr9 130034918 130034975 -12236469 + (TAA)n Simple_repeat Simple_repeat 2 58 0 308 269 11 32 chr9 130035002 130035095 -12236349 - MIR SINE MIR -88 174 84 285 318 63 10 chr9 130035276 130035445 -12235999 + MIR SINE MIR 59 242 -20 273 278 118 42 chr9 130036024 130036168 -12235276 + MIR3 SINE MIR 17 171 -37 231 310 0 14 chr9 130036871 130036942 -12234502 - L1M4 LINE L1 -1792 4354 4285 583 301 158 66 chr9 130037464 130037536 -12233908 + L1ME4a LINE L1 5605 5669 -452 1812 163 3 3 chr9 130037536 130037830 -12233614 + AluJo SINE Alu 9 302 -10 234 0 0 0 chr9 130037831 130037857 -12233587 + (TA)n Simple_repeat Simple_repeat 1 26 0 583 301 158 66 chr9 130037857 130038167 -12233277 + L1ME4a LINE L1 5669 6040 -81 1736 151 47 27 chr9 130038167 130038466 -12232978 + AluJb SINE Alu 1 305 -7 583 301 158 66 chr9 130038466 130038535 -12232909 + L1ME4a LINE L1 6040 6101 -20 266 274 0 43 chr9 130038544 130038661 -12232783 - MIR SINE MIR -3 259 148 904 294 130 8 chr9 130038662 130039053 -12232391 - MLT1K LTR MaLR -2 586 148 432 309 0 43 chr9 130039164 130039249 -12232195 - MIR SINE MIR -106 156 80 1734 154 0 17 chr9 130039249 130039541 -12231903 + AluJb SINE Alu 6 292 -20 432 309 0 43 chr9 130039541 130039617 -12231827 - MIR SINE MIR -182 80 2 413 290 172 5 chr9 130039942 130040163 -12231281 - MIR SINE MIR 0 262 5 2005 131 3 16 chr9 130040639 130040971 -12230473 + AluSx SINE Alu 3 312 0 283 204 51 10 chr9 130040972 130041070 -12230374 + L1ME4a LINE L1 6008 6109 -12 316 303 76 0 chr9 130041325 130041444 -12230000 + L2 LINE L2 3186 3313 0 192 266 105 73 chr9 130041475 130041569 -12229875 + MIR SINE MIR 109 209 -53 1881 161 0 3 chr9 130041569 130041880 -12229564 + AluSx SINE Alu 1 310 -2 192 266 105 73 chr9 130041880 130041909 -12229535 + MIR SINE MIR 209 236 -26 612 303 102 68 chr9 130042150 130042483 -12228961 + L1MC4a LINE L1 6063 6420 -1388 1741 170 32 66 chr9 130042483 130042694 -12228750 + MLT1A1 LTR MaLR 2 196 -169 1867 151 0 19 chr9 130042694 130043011 -12228433 - AluSx SINE Alu -1 311 1 1741 170 32 66 chr9 130043011 130043176 -12228268 + MLT1A1 LTR MaLR 196 365 0 612 303 102 68 chr9 130043176 130043354 -12228090 + L1MC4a LINE L1 6420 6591 -1217 2604 144 66 75 chr9 130043354 130043991 -12227453 - L1MC2 LINE L1 0 6344 5714 1221 270 30 8 chr9 130044018 130044381 -12227063 + L1MC4 LINE L1 6698 7068 -974 1663 143 38 0 chr9 130044409 130044675 -12226769 - AluJb SINE Alu -36 276 1 21 36 0 0 chr9 130044687 130044715 -12226729 + AT_rich Low_complexity Low_complexity 1 28 0 431 226 50 55 chr9 130044723 130044904 -12226540 + L1MC5 LINE L1 6989 7168 -793 974 166 6 0 chr9 130044904 130045067 -12226377 + FRAM SINE Alu 1 158 -18 1691 185 127 91 chr9 130045069 130045808 -12225636 + L1MC5 LINE L1 7166 7931 -30 566 171 0 0 chr9 130046266 130046375 -12225069 + FLAM_A SINE Alu 33 141 0 2214 107 0 0 chr9 130046375 130046673 -12224771 + AluSx SINE Alu 1 298 -14 1186 253 104 32 chr9 130046986 130047456 -12223988 + MLT1H LTR MaLR 43 546 -3 198 316 184 11 chr9 130047536 130047710 -12223734 + MIR SINE MIR 5 208 -54 225 329 29 0 chr9 130047881 130047951 -12223493 + L2 LINE L2 3240 3311 -2 620 184 7 41 chr9 130048067 130048214 -12223230 - MER5B DNA MER1_type -36 142 1 301 253 93 7 chr9 130048580 130048732 -12222712 - MIR SINE MIR -59 203 36 206 349 45 52 chr9 130048960 130049229 -12222215 + L2 LINE L2 2709 2975 -339 321 89 0 0 chr9 130049953 130049998 -12221446 + (A)n Simple_repeat Simple_repeat 1 45 0 1548 188 64 0 chr9 130050199 130050481 -12220963 - AluJo SINE Alu -12 300 1 477 267 42 0 chr9 130050779 130050899 -12220545 - FLAM_A SINE Alu -8 125 1 1905 141 3 0 chr9 130050943 130051240 -12220204 + AluSx SINE Alu 1 298 -14 718 274 8 46 chr9 130051697 130051960 -12219484 - L2 LINE L2 -201 3071 2819 283 319 119 41 chr9 130052717 130053012 -12218432 + L2 LINE L2 2643 2960 -354 2095 118 0 0 chr9 130053093 130053413 -12218031 + AluSx SINE Alu 1 320 0 223 229 0 0 chr9 130053413 130053461 -12217983 - MIR SINE MIR -98 164 117 596 277 121 9 chr9 130053627 130053851 -12217593 + MIR SINE MIR 2 250 -12 470 240 60 40 chr9 130054108 130054258 -12217186 + MIR SINE MIR 20 172 -90 280 216 81 72 chr9 130054456 130054567 -12216877 - Charlie8 DNA MER1_type -2197 220 109 758 197 197 17 chr9 130054577 130054810 -12216634 + L1ME3A LINE L1 5895 6169 -1 2081 131 0 6 chr9 130055199 130055511 -12215933 + AluSx SINE Alu 1 310 -2 1864 113 0 0 chr9 130056582 130056830 -12214614 - AluSg SINE Alu -28 282 35 253 256 122 77 chr9 130056844 130057075 -12214369 - MIR SINE MIR -5 257 1 558 0 0 0 chr9 130058762 130058824 -12212620 + (TG)n Simple_repeat Simple_repeat 2 63 0 228 35 0 0 chr9 130059756 130059785 -12211659 + (CA)n Simple_repeat Simple_repeat 1 29 0 24 53 0 0 chr9 130060198 130060236 -12211208 + GC_rich Low_complexity Low_complexity 1 38 0 60 64 0 0 chr9 130061409 130061518 -12209926 + GC_rich Low_complexity Low_complexity 1 109 0 23 33 0 0 chr9 130062316 130062346 -12209098 + GC_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr9 130062733 130062755 -12208689 + GC_rich Low_complexity Low_complexity 1 22 0 807 157 0 0 chr9 130114756 130114871 -12156573 + FLAM_C SINE Alu 1 115 -18 545 0 0 15 chr9 130114872 130114938 -12156506 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 1001 229 28 5 chr9 130115201 130115415 -12156029 - MER20 DNA MER1_type 0 219 1 386 315 68 24 chr9 130115457 130115708 -12155736 + Tigger8 DNA MER2_type 69 330 -336 192 317 106 73 chr9 130116183 130116306 -12155138 - L2 LINE L2 0 3272 3146 227 301 242 13 chr9 130116313 130116466 -12154978 + MER91A DNA MER1_type 2 189 -7 874 295 51 0 chr9 130118926 130119163 -12152281 + MIR SINE MIR 6 254 -8 548 246 38 60 chr9 130120563 130120807 -12150637 + MIR SINE MIR 12 256 -6 201 268 71 0 chr9 130120872 130120928 -12150516 + MIR SINE MIR 85 144 -118 402 239 68 26 chr9 130121496 130121613 -12149831 + MIR SINE MIR 20 141 -67 2179 99 13 3 chr9 130121638 130121941 -12149503 + AluSx SINE Alu 6 311 -1 737 233 52 7 chr9 130121944 130122148 -12149296 + MIR SINE MIR 34 255 -7 205 271 51 0 chr9 130122966 130123025 -12148419 + MIR SINE MIR 84 145 -63 2145 95 7 3 chr9 130123082 130123377 -12148067 + AluSg SINE Alu 1 296 -14 340 350 29 7 chr9 130123401 130123538 -12147906 + MIR SINE MIR 86 225 -37 305 282 60 17 chr9 130124510 130124627 -12146817 - MIR SINE MIR -35 227 106 230 244 33 33 chr9 130124953 130125043 -12146401 + GA-rich Low_complexity Low_complexity 5 94 0 423 318 39 34 chr9 130125721 130125954 -12145490 - L1MC4a LINE L1 -1910 5898 5665 195 313 45 80 chr9 130126060 130126172 -12145272 - L2 LINE L2 -1034 2280 2173 233 221 15 59 chr9 130126313 130126381 -12145063 + L2 LINE L2 3208 3272 0 409 298 43 14 chr9 130126759 130126900 -12144544 - MIR SINE MIR -40 222 78 2185 99 0 0 chr9 130126932 130127242 -12144202 - AluSx SINE Alu 0 310 1 214 255 0 0 chr9 130127929 130127980 -12143464 + (TG)n Simple_repeat Simple_repeat 2 52 0 920 195 105 0 chr9 130129196 130129386 -12142058 + MER6B DNA MER2_type 1 210 0 192 264 46 46 chr9 130130628 130130715 -12140729 + MIR SINE MIR 31 117 -145 210 37 0 0 chr9 130130943 130130970 -12140474 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 307 305 199 0 chr9 130131547 130131698 -12139746 + MIR SINE MIR 63 243 -19 306 295 81 50 chr9 130133205 130133463 -12137981 + L2 LINE L2 2539 2804 -510 2489 68 0 6 chr9 130133935 130134246 -12137198 + AluSc SINE Alu 1 309 0 2712 7 0 0 chr9 130134258 130134557 -12136887 + AluY SINE Alu 1 299 -12 358 247 24 12 chr9 130134863 130134948 -12136496 + L2 LINE L2 3227 3312 -1 441 293 48 2 chr9 130135114 130135314 -12136130 + MIR3 SINE MIR 47 254 -8 286 307 268 21 chr9 130136354 130136520 -12134924 + L3 LINE CR1 963 1087 -490 2313 93 7 3 chr9 130136520 130136830 -12134614 + AluSx SINE Alu 2 312 0 286 307 268 21 chr9 130136830 130136943 -12134501 + L3 LINE CR1 1087 1311 -266 560 248 12 6 chr9 130137766 130138093 -12133351 + (TGGA)n Simple_repeat Simple_repeat 1 328 0 283 291 105 26 chr9 130138777 130138997 -12132447 + MIR3 SINE MIR 4 255 -7 219 276 0 0 chr9 130139153 130139211 -12132233 + L2 LINE L2 3215 3272 0 254 188 0 0 chr9 130139286 130139334 -12132110 + MIR SINE MIR 188 235 -27 652 255 157 74 chr9 130139714 130140112 -12131332 + L2 LINE L2 2244 2608 -705 2258 113 0 0 chr9 130140112 130140421 -12131023 + AluSx SINE Alu 4 312 0 652 255 157 74 chr9 130140421 130140585 -12130859 + L2 LINE L2 2608 2757 -556 844 158 0 0 chr9 130140585 130140718 -12130726 - FLAM_C SINE Alu 0 133 1 652 255 157 74 chr9 130140718 130141103 -12130341 + L2 LINE L2 2757 3300 -13 2254 104 0 0 chr9 130141105 130141414 -12130030 + AluSg SINE Alu 1 309 -1 47 19 0 0 chr9 130141762 130141816 -12129628 + GC_rich Low_complexity Low_complexity 1 54 0 478 299 51 0 chr9 130142233 130142390 -12129054 - MIR SINE MIR -92 170 6 285 354 55 18 chr9 130142876 130143040 -12128404 - MIR SINE MIR -11 251 82 404 284 53 62 chr9 130143622 130143830 -12127614 - L2 LINE L2 -219 3053 2848 455 257 40 46 chr9 130144297 130144449 -12126995 - MIR SINE MIR -88 174 24 1861 53 0 4 chr9 130144564 130144791 -12126653 + AluY SINE Alu 77 302 -9 468 285 95 0 chr9 130145238 130145396 -12126048 + MIR SINE MIR 80 252 -10 481 279 49 77 chr9 130145619 130145708 -12125736 - MIR SINE MIR -20 242 159 2287 98 0 3 chr9 130145708 130146014 -12125430 - AluSx SINE Alu -1 311 7 481 279 49 77 chr9 130146014 130146107 -12125337 - MIR SINE MIR -103 159 65 425 315 67 6 chr9 130146128 130146293 -12125151 - MIR SINE MIR -54 208 34 413 321 14 36 chr9 130147135 130147275 -12124169 + MER91A DNA MER1_type 2 138 -58 250 211 133 11 chr9 130147451 130147541 -12123903 - MIR SINE MIR -44 218 118 * 400 301 0 27 chr9 130147539 130147685 -12123759 - L2 LINE L2 -165 3107 2966 762 298 5 0 chr9 130148279 130148470 -12122974 + MIR SINE MIR 65 256 -6 490 318 51 42 chr9 130148612 130148945 -12122499 - L2 LINE L2 -468 2846 2511 225 254 0 28 chr9 130149920 130149991 -12121453 + (CA)n Simple_repeat Simple_repeat 1 69 0 21 0 0 0 chr9 130151818 130151839 -12119605 + GC_rich Low_complexity Low_complexity 1 21 0 272 173 24 47 chr9 130152629 130152756 -12118688 + (CTGGGG)n Simple_repeat Simple_repeat 4 127 0 450 300 126 22 chr9 130152961 130153184 -12118260 - MIR SINE MIR 0 262 17 189 257 133 0 chr9 130153758 130153863 -12117581 + L2 LINE L2 2379 2497 -817 204 335 125 23 chr9 130154098 130154402 -12117042 + L2 LINE L2 2820 3154 -118 214 264 190 33 chr9 130156182 130156303 -12115141 - L3 LINE CR1 -9 1568 1429 450 323 205 41 chr9 130156398 130156650 -12114794 - L3 LINE CR1 -467 1110 901 2254 67 3 0 chr9 130156650 130156987 -12114457 - AluSp SINE Alu 0 338 1 450 323 205 41 chr9 130156987 130157446 -12113998 - L3 LINE CR1 -676 901 281 453 248 74 22 chr9 130157964 130158112 -12113332 - MIR3 SINE MIR -25 183 28 182 304 101 14 chr9 130158147 130158216 -12113228 - L3 LINE CR1 -1222 355 281 181 237 0 0 chr9 130158271 130158309 -12113135 - MIR3 SINE MIR -8 200 163 289 277 0 0 chr9 130158531 130158596 -12112848 - MIR SINE MIR -63 145 81 260 310 121 0 chr9 130158820 130158936 -12112508 - MIR3 SINE MIR -65 143 14 208 255 0 0 chr9 130159376 130159427 -12112017 + (CA)n Simple_repeat Simple_repeat 1 51 0 387 320 187 24 chr9 130160122 130160453 -12110991 - L2 LINE L2 0 3272 2888 280 250 116 62 chr9 130160490 130160602 -12110842 - L2 LINE L2 -625 2689 2572 288 316 101 19 chr9 130161570 130161728 -12109716 - MIR SINE MIR -85 177 7 1418 189 19 15 chr9 130162196 130162461 -12108983 - AluJo SINE Alu -46 266 1 222 263 211 0 chr9 130162531 130162607 -12108837 - MIR SINE MIR -75 187 96 234 296 168 10 chr9 130163503 130163699 -12107745 - L2 LINE L2 -209 3063 2837 400 250 20 0 chr9 130164461 130164561 -12106883 - MIR SINE MIR -115 147 46 212 133 0 83 chr9 130165016 130165076 -12106368 + (CCCCCA)n Simple_repeat Simple_repeat 3 57 0 254 190 114 0 chr9 130165657 130165736 -12105708 + MLT1K LTR MaLR 497 584 -4 440 283 145 31 chr9 130166521 130166557 -12104887 - MIR SINE MIR -18 244 213 2093 116 6 6 chr9 130166557 130166868 -12104576 - AluSx SINE Alu -1 311 1 440 283 145 31 chr9 130166868 130166990 -12104454 - MIR SINE MIR -49 213 68 1829 162 0 7 chr9 130167568 130167865 -12103579 + AluSx SINE Alu 1 295 -17 2522 109 11 16 chr9 130167884 130168250 -12103194 + THE1B LTR MaLR 1 364 0 573 88 0 0 chr9 130168586 130168666 -12102778 + (TA)n Simple_repeat Simple_repeat 1 80 0 500 298 56 56 chr9 130168675 130168927 -12102517 - L1M4 LINE L1 -3663 2483 2232 1120 185 4 53 chr9 130169186 130169449 -12101995 - AluJo SINE Alu 0 312 76 806 147 0 0 chr9 130169476 130169592 -12101852 - FLAM_C SINE Alu -17 116 1 284 277 45 18 chr9 130169643 130169755 -12101689 - L1ME3 LINE L1 -211 5934 5820 482 133 0 44 chr9 130169803 130169893 -12101551 - AluS SINE Alu -1 309 224 1188 278 77 88 chr9 130169900 130170368 -12101076 - L1ME3 LINE L1 -1158 4971 4499 2142 124 3 0 chr9 130170368 130170674 -12100770 - AluSq SINE Alu -1 312 6 1188 278 77 88 chr9 130170674 130171092 -12100352 - L1ME3 LINE L1 -1630 4499 4078 2387 71 3 7 chr9 130171092 130171402 -12100042 - AluY SINE Alu -2 309 1 1188 278 77 88 chr9 130171402 130171938 -12099506 - L1ME3 LINE L1 -2051 4078 3538 2263 64 42 0 chr9 130171938 130172221 -12099223 + AluY SINE Alu 1 295 -16 1188 278 77 88 chr9 130172221 130172273 -12099171 - L1ME3 LINE L1 -2591 3538 3487 189 0 0 0 chr9 130172273 130172294 -12099150 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1953 161 0 0 chr9 130172300 130172599 -12098845 - AluSx SINE Alu -13 299 1 1188 278 77 88 chr9 130172599 130172813 -12098631 - L1ME3 LINE L1 -2647 3482 3292 1611 150 79 0 chr9 130172824 130173091 -12098353 + AluSq SINE Alu 9 296 -17 394 301 27 27 chr9 130173091 130173237 -12098207 - L1ME3 LINE L1 -3264 2865 2720 948 107 0 0 chr9 130173252 130173383 -12098061 - AluSg SINE Alu -179 131 1 636 315 57 24 chr9 130173396 130174012 -12097432 - L1ME3 LINE L1 -3401 2728 2093 1405 184 69 21 chr9 130174093 130174381 -12097063 + AluJo SINE Alu 1 302 0 991 114 6 6 chr9 130174387 130174554 -12096890 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 371 305 138 18 chr9 130174895 130175101 -12096343 - L1ME3 LINE L1 -4440 1689 1379 1756 153 28 0 chr9 130175106 130175393 -12096051 + AluJb SINE Alu 1 295 -17 285 321 4 80 chr9 130175393 130175422 -12096022 - HAL1 LINE L1 -898 1609 1579 3404 198 17 63 chr9 130175422 130176438 -12095006 + LTR5 LTR ERVK 1 969 0 285 321 4 80 chr9 130176438 130176531 -12094913 - HAL1 LINE L1 -928 1579 1480 1644 127 0 8 chr9 130176531 130176818 -12094626 - AluSx SINE Alu 0 327 43 285 321 4 80 chr9 130176818 130176955 -12094489 - HAL1 LINE L1 -1027 1480 1368 * 1378 237 37 62 chr9 130176941 130177158 -12094286 - L1ME3 LINE L1 -4902 1217 996 551 100 0 0 chr9 130177158 130177238 -12094206 + MADE1 DNA Mariner 1 80 0 1378 237 37 62 chr9 130177238 130177395 -12094049 - L1ME3 LINE L1 -5123 996 837 315 0 0 0 chr9 130177395 130177430 -12094014 + (TG)n Simple_repeat Simple_repeat 1 35 0 1378 237 37 62 chr9 130177430 130177728 -12093716 - L1ME3 LINE L1 -5282 837 561 231 246 29 0 chr9 130177923 130177992 -12093452 - L1ME3 LINE L1 -5968 151 81 1941 122 40 0 chr9 130178007 130178182 -12093262 - AluSq SINE Alu -5 308 115 224 89 0 22 chr9 130178182 130178227 -12093217 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1941 122 40 0 chr9 130178227 130178347 -12093097 - AluSq SINE Alu -198 115 1 267 295 26 0 chr9 130178441 130178519 -12092925 - MIR SINE MIR -103 159 80 247 288 134 81 chr9 130179084 130179346 -12092098 - L2 LINE L2 -5 3267 2976 1948 125 0 58 chr9 130179346 130179673 -12091771 + AluSg SINE Alu 1 308 -2 247 288 134 81 chr9 130179673 130179806 -12091638 - L2 LINE L2 -296 2976 2851 1705 137 39 11 chr9 130180026 130180310 -12091134 + AluSx SINE Alu 1 292 -20 214 281 94 42 chr9 130180905 130181001 -12090443 + MIR SINE MIR 19 119 -143 29 0 0 0 chr9 130181853 130181882 -12089562 + GC_rich Low_complexity Low_complexity 1 29 0 200 170 21 21 chr9 130182993 130183040 -12088404 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 298 274 9 57 chr9 130183375 130183481 -12087963 + MIR SINE MIR 5 105 -157 1269 143 5 27 chr9 130183943 130184166 -12087278 + AluJo SINE Alu 88 305 -7 2222 93 10 6 chr9 130184437 130184749 -12086695 - AluSp SINE Alu 0 313 1 1153 299 40 19 chr9 130184904 130185567 -12085877 - L1ME3A LINE L1 -289 5881 5204 817 140 39 39 chr9 130185602 130185780 -12085664 - L1MA7 LINE L1 0 6291 6114 592 174 8 8 chr9 130185926 130186058 -12085386 + CT-rich Low_complexity Low_complexity 1 132 0 678 288 31 87 chr9 130186109 130186123 -12085321 - L1ME3A LINE L1 -1087 5059 5046 2081 129 0 0 chr9 130186123 130186432 -12085012 - AluSx SINE Alu -3 309 1 678 288 31 87 chr9 130186432 130186772 -12084672 - L1ME3A LINE L1 -1100 5046 4689 905 280 63 63 chr9 130186772 130187137 -12084307 + MLT1J1 LTR MaLR 1 368 -78 2196 105 7 0 chr9 130187137 130187442 -12084002 - AluSc SINE Alu -2 307 1 905 280 63 63 chr9 130187442 130187522 -12083922 + MLT1J1 LTR MaLR 367 446 0 678 288 31 87 chr9 130187522 130188061 -12083383 - L1ME3A LINE L1 -1457 4689 4215 860 260 105 17 chr9 130188068 130188364 -12083080 + L2 LINE L2 2937 3258 -55 576 264 80 28 chr9 130188617 130188981 -12082463 - L1ME3A LINE L1 -2221 3925 3543 1935 158 0 0 chr9 130189008 130189318 -12082126 - AluSx SINE Alu -2 310 1 2250 101 7 0 chr9 130189456 130189764 -12081680 - AluSx SINE Alu -2 310 1 1037 127 0 0 chr9 130189816 130189966 -12081478 + AluSg/x SINE Alu 135 284 -26 288 0 0 0 chr9 130189966 130189998 -12081446 + (CA)n Simple_repeat Simple_repeat 2 33 0 492 320 102 42 chr9 130190074 130190773 -12080671 - L1ME3A LINE L1 -2884 3262 2467 348 280 37 41 chr9 130190826 130190961 -12080483 - L1ME3A LINE L1 -3794 2352 2217 2258 94 0 0 chr9 130190961 130191259 -12080185 - AluSp SINE Alu -15 298 1 348 280 37 41 chr9 130191259 130191341 -12080103 - L1ME3A LINE L1 -3929 2217 2136 22 35 0 0 chr9 130191471 130191500 -12079944 + AT_rich Low_complexity Low_complexity 1 29 0 1359 87 14 19 chr9 130191652 130191859 -12079585 - AluY SINE Alu -12 299 94 364 219 0 0 chr9 130191903 130191976 -12079468 - HsTC2 DNA Tc2 0 1898 1826 7019 196 42 72 chr9 130191979 130192852 -12078592 + L1M4 LINE L1 1 899 -5745 1914 119 7 0 chr9 130192852 130193164 -12078280 + AluSc SINE Alu 1 314 0 7019 196 42 72 chr9 130193164 130193683 -12077761 + L1M4 LINE L1 899 1432 -5212 2001 123 0 0 chr9 130193683 130193968 -12077476 + AluSx SINE Alu 13 297 -15 7019 196 42 72 chr9 130193968 130194427 -12077017 + L1M4 LINE L1 1432 1903 -4741 1622 189 0 0 chr9 130194427 130194722 -12076722 + AluJo SINE Alu 7 301 0 7019 196 42 72 chr9 130194722 130195768 -12075676 + L1M4 LINE L1 1903 2870 -3774 456 19 0 0 chr9 130195780 130195833 -12075611 + (TA)n Simple_repeat Simple_repeat 2 54 0 3889 218 53 6 chr9 130195834 130196938 -12074506 + L1M4 LINE L1 3270 4425 -2219 645 167 141 50 chr9 130196938 130197136 -12074308 - HsTC2 DNA Tc2 -67 1831 1616 7328 248 46 24 chr9 130197139 130198106 -12073338 - ERVL-E LTR ERVL -314 5450 4506 2677 130 14 27 chr9 130198106 130198544 -12072900 + MSTB1 LTR MaLR 1 432 0 7328 248 46 24 chr9 130198544 130199507 -12071937 - ERVL-E LTR ERVL -1258 4506 3477 626 298 119 5 chr9 130199536 130199754 -12071690 - ERVL-E LTR ERVL -3630 2134 1892 1654 286 109 92 chr9 130199800 130200161 -12071283 - ERVL-E LTR ERVL -3926 1728 1375 1614 156 90 7 chr9 130200161 130200449 -12070995 - AluJo SINE Alu 0 312 1 1654 286 109 92 chr9 130200449 130201495 -12069949 - ERVL-E LTR ERVL -4279 1375 297 1021 76 0 8 chr9 130201499 130201630 -12069814 + AluY SINE Alu 5 134 -177 2116 116 0 3 chr9 130201632 130201933 -12069511 + AluSc SINE Alu 3 302 -7 1768 259 122 14 chr9 130202220 130202787 -12068657 - MLT2E LTR ERVL 0 628 1 1608 165 14 28 chr9 130203082 130203373 -12068071 - AluJo SINE Alu -25 287 1 879 181 176 23 chr9 130203940 130204156 -12067288 + MER88 LTR ERVL 216 464 0 2040 113 3 0 chr9 130204156 130204448 -12066996 + AluSx SINE Alu 1 293 -19 253 157 0 57 chr9 130204555 130204625 -12066819 + CT-rich Low_complexity Low_complexity 4 69 0 339 338 5 18 chr9 130205203 130205516 -12065928 + CT-rich Low_complexity Low_complexity 1 316 -403 311 268 14 29 chr9 130205368 130205506 -12065938 + (TCTCTG)n Simple_repeat Simple_repeat 2 137 0 * 1589 148 22 66 chr9 130205516 130205703 -12065741 - AluSx SINE Alu -9 303 134 180 0 0 0 chr9 130205703 130205723 -12065721 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1589 148 22 66 chr9 130205723 130205852 -12065592 - AluSx SINE Alu -178 134 1 339 338 5 18 chr9 130205852 130205931 -12065513 + CT-rich Low_complexity Low_complexity 316 719 0 253 269 0 15 chr9 130205946 130206013 -12065431 + (TA)n Simple_repeat Simple_repeat 2 67 0 2177 109 0 10 chr9 130206189 130206501 -12064943 - AluSc SINE Alu 0 309 1 312 137 0 0 chr9 130206629 130206680 -12064764 + (CA)n Simple_repeat Simple_repeat 2 52 0 346 295 16 26 chr9 130206829 130206847 -12064597 + CT-rich Low_complexity Low_complexity 1 18 -491 1548 165 0 8 chr9 130206847 130207108 -12064336 - AluSx SINE Alu -11 301 43 346 295 16 26 chr9 130207108 130207344 -12064100 + CT-rich Low_complexity Low_complexity 18 509 0 333 68 0 0 chr9 130207363 130207407 -12064037 + (TCCCC)n Simple_repeat Simple_repeat 5 48 0 426 261 68 31 chr9 130207543 130207704 -12063740 - HAL1 LINE L1 -882 1625 1459 313 250 42 17 chr9 130207759 130207879 -12063565 - L1MEd LINE L1 -5011 1108 986 1720 176 3 3 chr9 130207945 130208251 -12063193 - AluJo SINE Alu -6 306 1 1836 118 0 15 chr9 130208343 130208504 -12062940 - AluSx SINE Alu -18 294 137 2353 73 0 10 chr9 130208504 130208817 -12062627 - AluY SINE Alu -1 310 1 1836 118 0 15 chr9 130208817 130208925 -12062519 - AluSx SINE Alu -175 137 29 21 36 0 0 chr9 130209154 130209182 -12062262 + AT_rich Low_complexity Low_complexity 1 28 0 204 293 0 0 chr9 130209535 130209593 -12061851 + CT-rich Low_complexity Low_complexity 1 58 0 2312 77 0 3 chr9 130209634 130209932 -12061512 + AluY SINE Alu 1 297 -14 232 174 43 0 chr9 130209962 130210008 -12061436 - MLT1K LTR MaLR -32 556 509 493 310 140 30 chr9 130210351 130210751 -12060693 + LTR16A LTR ERVL 4 447 -3 2243 87 0 16 chr9 130210905 130211215 -12060229 - AluSg1 SINE Alu -4 305 1 481 148 0 25 chr9 130211234 130211315 -12060129 - L1M3 LINE L1 -662 5521 5443 604 167 98 0 chr9 130211323 130211455 -12059989 - L1MA4 LINE L1 -4 6296 6152 289 116 0 0 chr9 130211449 130211492 -12059952 + L1M2 LINE L1 5726 5768 -532 * 772 309 66 25 chr9 130211557 130211874 -12059570 + LTR16A LTR ERVL 16 345 -105 188 353 0 0 chr9 130211916 130211967 -12059477 + MER5A DNA MER1_type 139 189 0 230 295 74 25 chr9 130212307 130212476 -12058968 + L2 LINE L2 3011 3255 -17 289 232 0 0 chr9 130212706 130212762 -12058682 - MER96 DNA MER1_type? -86 89 34 2023 104 44 7 chr9 130212799 130213096 -12058348 + AluSx SINE Alu 1 308 -4 1744 50 4 95 chr9 130213098 130213391 -12058053 + AluSp SINE Alu 48 316 0 419 225 99 14 chr9 130213427 130213569 -12057875 - MIR SINE MIR -27 235 82 225 232 14 14 chr9 130213633 130213702 -12057742 + L2 LINE L2 2880 2948 -324 356 314 28 0 chr9 130213743 130213923 -12057521 - MIR3 SINE MIR -60 148 2 2127 104 6 28 chr9 130214915 130215233 -12056211 + AluSx SINE Alu 1 311 -1 1512 229 137 31 chr9 130215947 130216468 -12054976 - MLT1F1 LTR MaLR 0 567 7 2120 84 3 44 chr9 130216481 130216666 -12054778 - AluSc SINE Alu -2 307 139 2051 131 0 3 chr9 130216666 130216972 -12054472 - AluSp SINE Alu -6 307 3 2120 84 3 44 chr9 130216972 130217106 -12054338 - AluSc SINE Alu -170 139 1 1665 149 0 40 chr9 130217107 130217409 -12054035 - AluJo SINE Alu -16 296 7 270 266 31 0 chr9 130217727 130217791 -12053653 + MLT1J LTR MaLR 110 175 -336 1699 95 22 0 chr9 130218007 130218239 -12053205 - AluSq SINE Alu -76 237 1 261 221 77 29 chr9 130218292 130218396 -12053048 + MLT1J LTR MaLR 399 507 -4 888 293 31 7 chr9 130218496 130218790 -12052654 + L1ME4a LINE L1 5477 5777 -344 1358 171 45 51 chr9 130218790 130218870 -12052574 + MER33 DNA MER1_type 1 69 -2516 1506 173 37 30 chr9 130218870 130219165 -12052279 + AluJo SINE Alu 1 297 -15 1358 171 45 51 chr9 130219165 130219418 -12052026 + MER33 DNA MER1_type 69 321 -3 2217 92 0 0 chr9 130219468 130219760 -12051684 + AluSg SINE Alu 1 292 -18 315 301 53 58 chr9 130219791 130219907 -12051537 + L1ME4a LINE L1 5845 5961 -160 1771 165 3 0 chr9 130219907 130220204 -12051240 - AluJb SINE Alu -10 302 5 315 301 53 58 chr9 130220204 130220313 -12051131 + L1ME4a LINE L1 5961 6069 -52 21 0 0 0 chr9 130220888 130220909 -12050535 + AT_rich Low_complexity Low_complexity 1 21 0 2487 40 0 3 chr9 130220919 130221221 -12050223 - AluY SINE Alu -10 301 1 2160 113 0 0 chr9 130221590 130221892 -12049552 - AluSx SINE Alu -10 302 1 23 54 0 0 chr9 130221967 130222004 -12049440 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr9 130222201 130222236 -12049208 + AT_rich Low_complexity Low_complexity 1 35 0 753 247 185 44 chr9 130222272 130222725 -12048719 - MLT1H1 LTR MaLR -2 553 37 2091 105 3 7 chr9 130222952 130223256 -12048188 - AluSx SINE Alu -9 303 1 708 288 14 12 chr9 130223311 130223511 -12047933 - MIR SINE MIR -38 224 27 1444 155 86 11 chr9 130223511 130223789 -12047655 - AluJo SINE Alu -13 299 1 708 288 14 12 chr9 130223789 130223810 -12047634 - MIR SINE MIR -235 27 8 2248 88 3 0 chr9 130223898 130224195 -12047249 + AluSp SINE Alu 1 298 -15 495 236 31 32 chr9 130224447 130224762 -12046682 + L1M4 LINE L1 5263 5583 -595 2041 104 7 3 chr9 130224762 130225060 -12046384 + AluSx SINE Alu 1 299 -13 2239 80 0 0 chr9 130225062 130225349 -12046095 + AluSx SINE Alu 1 287 -25 256 313 89 58 chr9 130225513 130225772 -12045672 + L1MDa LINE L1 65 331 -6209 428 148 0 0 chr9 130226117 130226178 -12045266 + AluSx SINE Alu 2 62 -256 1887 70 52 19 chr9 130226185 130226489 -12044955 - AluY SINE Alu 0 313 1 1598 145 0 0 chr9 130226490 130226731 -12044713 + AluSx SINE Alu 52 292 -20 2798 194 36 117 chr9 130226777 130226987 -12044457 + L1M4 LINE L1 2208 2433 -3713 2049 130 0 3 chr9 130226987 130227287 -12044157 + AluSx SINE Alu 1 299 -13 2798 194 36 117 chr9 130227287 130227783 -12043661 + L1M4 LINE L1 2433 2968 -3178 1964 111 7 20 chr9 130227783 130228081 -12043363 + AluSx SINE Alu 1 294 -18 2798 194 36 117 chr9 130228081 130228130 -12043314 + L1M4 LINE L1 2968 3019 -3127 852 168 43 38 chr9 130228130 130228315 -12043129 + L1MB1 LINE L1 5966 6151 -17 2798 194 36 117 chr9 130228315 130228342 -12043102 + L1M4 LINE L1 3019 3047 -3099 2354 59 10 0 chr9 130228342 130228632 -12042812 + AluY SINE Alu 1 293 -18 2798 194 36 117 chr9 130228632 130228777 -12042667 + L1M4 LINE L1 3047 3041 -3105 1565 167 18 7 chr9 130228777 130229059 -12042385 + AluJb SINE Alu 13 297 -15 2798 194 36 117 chr9 130229059 130229211 -12042233 + L1M4 LINE L1 3040 3203 -2943 2103 91 0 14 chr9 130229211 130229497 -12041947 + AluSg1 SINE Alu 1 282 -27 237 647 0 26 chr9 130229497 130229653 -12041791 + (TTAA)n Simple_repeat Simple_repeat 1 152 0 2263 81 7 0 chr9 130229666 130229963 -12041481 - AluY SINE Alu -12 299 1 396 272 140 7 chr9 130230027 130230163 -12041281 + L1M4 LINE L1 3004 3157 -2989 910 234 78 0 chr9 130230167 130230372 -12041072 + MIR SINE MIR 41 261 -1 813 188 0 0 chr9 130230497 130230630 -12040814 - FLAM_C SINE Alu 0 133 1 309 259 111 55 chr9 130230839 130231128 -12040316 + L1M4 LINE L1 3520 3824 -2322 739 254 65 39 chr9 130231148 130231380 -12040064 + MIR SINE MIR 21 258 -4 1875 143 10 0 chr9 130231407 130231528 -12039916 + AluSx SINE Alu 1 119 -193 207 0 0 0 chr9 130231528 130231551 -12039893 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1875 143 10 0 chr9 130231551 130231723 -12039721 + AluSx SINE Alu 119 297 -15 2316 88 0 16 chr9 130231725 130232042 -12039402 + AluSx SINE Alu 1 312 0 30 0 0 0 chr9 130232043 130232073 -12039371 + AT_rich Low_complexity Low_complexity 1 30 0 1973 113 7 7 chr9 130232612 130232903 -12038541 + AluSx SINE Alu 1 291 -21 256 259 17 60 chr9 130232913 130233029 -12038415 + L1M4 LINE L1 3873 3983 -2163 305 313 28 0 chr9 130233204 130233348 -12038096 - MER103 DNA DNA -7 159 12 527 271 167 60 chr9 130233464 130233945 -12037499 + L1M4 LINE L1 4084 4664 -1482 2457 55 0 3 chr9 130233945 130234255 -12037189 - AluY SINE Alu -2 309 1 527 271 167 60 chr9 130234255 130234445 -12036999 + L1M4 LINE L1 4664 4832 -1314 294 303 9 18 chr9 130234473 130234582 -12036862 - LTR67 LTR ERVL -19 538 431 568 358 34 10 chr9 130234855 130235148 -12036296 + L2 LINE L2 2330 2629 -685 550 205 16 12 chr9 130235191 130235339 -12036105 - L1ME1 LINE L1 -180 5986 5863 203 410 0 0 chr9 130235350 130235450 -12035994 + L2 LINE L2 3134 3233 -39 25 0 0 0 chr9 130235480 130235505 -12035939 + AT_rich Low_complexity Low_complexity 1 25 0 1028 161 92 56 chr9 130235629 130235819 -12035625 - MLT1A2 LTR MaLR -8 366 163 2250 101 0 0 chr9 130235819 130236127 -12035317 - AluSx SINE Alu -4 308 1 1028 161 92 56 chr9 130236127 130236185 -12035259 - MLT1A2 LTR MaLR -211 163 109 1543 101 4 18 chr9 130236185 130236412 -12035032 + AluSg/x SINE Alu 87 310 -2 188 132 0 26 chr9 130236415 130236453 -12034991 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 2127 83 0 14 chr9 130236549 130236873 -12034571 - AluSg SINE Alu 0 310 1 220 288 175 0 chr9 130237246 130237406 -12034038 + MIR SINE MIR 60 247 -15 348 310 20 34 chr9 130237857 130238053 -12033391 - L1M4 LINE L1 -379 5799 5606 2041 113 0 19 chr9 130238175 130238484 -12032960 - AluSg SINE Alu -7 303 1 2220 83 7 3 chr9 130238493 130238795 -12032649 - AluY SINE Alu -8 303 1 1088 166 9 27 chr9 130239034 130239257 -12032187 + AluJb SINE Alu 84 302 -10 241 272 25 43 chr9 130239500 130239665 -12031779 + MIR SINE MIR 9 260 -2 186 308 100 0 chr9 130239627 130239747 -12031697 - MIR SINE MIR -36 226 95 * 2097 97 3 0 chr9 130239775 130240093 -12031351 + AluSx SINE Alu 1 312 0 2116 92 31 0 chr9 130240095 130240387 -12031057 + AluSg SINE Alu 3 303 -7 213 71 0 95 chr9 130241114 130241156 -12030288 + (GGGGA)n Simple_repeat Simple_repeat 2 39 0 1615 105 0 0 chr9 130241618 130241846 -12029598 + AluSg/x SINE Alu 83 310 0 2049 80 0 4 chr9 130242176 130242452 -12028992 - AluY SINE Alu -10 301 27 246 251 42 116 chr9 130242452 130242667 -12028777 - L2 LINE L2 -605 2709 2511 246 309 53 0 chr9 130242769 130242863 -12028581 - MLT1H LTR MaLR -428 121 23 2037 100 19 26 chr9 130242874 130243185 -12028259 - AluSq SINE Alu -4 309 1 594 279 33 25 chr9 130243629 130243869 -12027575 + L1M4 LINE L1 4739 4980 -1166 668 324 41 5 chr9 130243985 130244204 -12027240 - MIR SINE MIR -15 247 21 2672 75 26 0 chr9 130244212 130244558 -12026886 + THE1A LTR MaLR 1 355 0 225 0 0 0 chr9 130245031 130245056 -12026388 + (A)n Simple_repeat Simple_repeat 1 25 0 2266 61 0 0 chr9 130245056 130245335 -12026109 + AluY SINE Alu 1 279 -32 519 17 0 0 chr9 130245337 130245397 -12026047 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2210 109 0 0 chr9 130245570 130245881 -12025563 - AluSx SINE Alu -1 311 1 575 323 161 30 chr9 130245929 130246425 -12025019 + L2 LINE L2 2188 2748 -566 2599 193 42 13 chr9 130246425 130247062 -12024382 + L1ME1 LINE L1 4774 5435 -743 774 147 0 0 chr9 130247081 130247197 -12024247 + FLAM_C SINE Alu 11 126 -17 2556 219 98 25 chr9 130247208 130247916 -12023528 + L1ME1 LINE L1 5407 6165 -1 195 396 0 0 chr9 130247916 130248022 -12023422 + L2 LINE L2 2770 2875 -439 439 253 149 11 chr9 130248103 130248277 -12023167 - MLT2F LTR ERVL -462 201 4 287 297 58 43 chr9 130248456 130248594 -12022850 + MER91B DNA MER1_type 11 150 -40 288 200 0 0 chr9 130248594 130248654 -12022790 + CT-rich Low_complexity Low_complexity 1 60 0 2392 68 7 0 chr9 130248654 130248962 -12022482 - AluY SINE Alu -1 310 1 332 407 35 0 chr9 130249045 130249190 -12022254 + L2 LINE L2 3123 3272 0 740 266 106 9 chr9 130249290 130249516 -12021928 + MIR SINE MIR 1 248 -14 234 91 0 0 chr9 130249523 130249556 -12021888 + (CATA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr9 130250276 130250296 -12021148 + (T)n Simple_repeat Simple_repeat 1 20 0 1895 104 0 0 chr9 130250296 130250546 -12020898 - AluSx SINE Alu -62 250 1 1081 150 0 0 chr9 130250577 130250744 -12020700 + AluSg/x SINE Alu 137 303 -9 463 231 129 7 chr9 130250760 130250907 -12020537 + Charlie8 DNA MER1_type 115 279 -2138 820 209 16 22 chr9 130250997 130251179 -12020265 - LTR33 LTR ERVL -1 520 340 1667 130 76 4 chr9 130251481 130251757 -12019687 + AluSx SINE Alu 1 296 -16 2056 125 0 0 chr9 130251848 130252144 -12019300 + AluY SINE Alu 1 296 -15 1404 156 56 81 chr9 130252536 130252856 -12018588 + AluJb SINE Alu 1 312 0 669 273 130 75 chr9 130253005 130253482 -12017962 + LTR67 LTR ERVL 41 543 -14 292 249 140 116 chr9 130253585 130253914 -12017530 - MLT1K LTR MaLR 0 588 252 * 364 283 11 110 chr9 130253888 130254079 -12017365 + MLT1H LTR MaLR 378 549 0 2230 95 3 0 chr9 130254358 130254663 -12016781 + AluSx SINE Alu 1 306 -6 1073 61 0 0 chr9 130254847 130254979 -12016465 + AluY SINE Alu 1 132 -179 257 338 0 12 chr9 130255234 130255314 -12016130 + MLT1H-int LTR MaLR 787 865 -506 2212 114 3 0 chr9 130255323 130255629 -12015815 - AluSg SINE Alu -3 307 1 306 283 115 86 chr9 130255869 130256183 -12015261 + MLT1H-int LTR MaLR 1025 1347 -24 517 228 95 59 chr9 130256225 130256523 -12014921 + MLT1H LTR MaLR 29 302 -107 228 283 71 30 chr9 130256533 130256632 -12014812 + MLT1H LTR MaLR 487 589 -6 247 268 37 0 chr9 130256679 130256761 -12014683 - MLT1J LTR MaLR -2 509 425 520 270 64 31 chr9 130256871 130256916 -12014528 - L1MCa LINE L1 -2866 3263 3221 2304 74 0 3 chr9 130256916 130257228 -12014216 - AluY SINE Alu 0 311 1 520 270 64 31 chr9 130257228 130257571 -12013873 - L1MCa LINE L1 -2908 3221 2862 2063 123 7 13 chr9 130257571 130257880 -12013564 - AluSg SINE Alu -3 307 1 455 105 0 13 chr9 130257911 130257987 -12013457 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 321 300 43 40 chr9 130257987 130258240 -12013204 - L1MCa LINE L1 -3241 2888 2635 1422 136 9 175 chr9 130258251 130258686 -12012758 - MLT1A1 LTR MaLR -2 363 1 311 272 65 0 chr9 130258701 130258793 -12012651 - L1MCa LINE L1 -3601 2528 2431 301 194 0 48 chr9 130258775 130258837 -12012607 - L1MCa LINE L1 -4362 1767 1709 * 306 0 0 0 chr9 130258837 130258871 -12012573 + (CA)n Simple_repeat Simple_repeat 1 34 0 2005 133 0 0 chr9 130258883 130259169 -12012275 - AluSq SINE Alu -27 286 1 265 260 13 0 chr9 130259169 130259246 -12012198 - L1MCa LINE L1 -3671 2458 2381 232 277 0 0 chr9 130259306 130259353 -12012091 - MLT1I LTR MaLR -221 188 142 1929 115 11 3 chr9 130259371 130259658 -12011786 + AluSp SINE Alu 1 289 -24 524 274 97 59 chr9 130259709 130259946 -12011498 - MLT1I LTR MaLR -49 360 115 2252 73 3 0 chr9 130260044 130260331 -12011113 - AluY SINE Alu -21 290 3 876 158 32 32 chr9 130260370 130260528 -12010916 - AluJo SINE Alu -8 294 137 1278 155 9 9 chr9 130260529 130260742 -12010702 - AluJo SINE Alu -14 298 86 769 197 0 0 chr9 130260746 130260873 -12010571 - AluJo SINE Alu -171 131 5 316 204 46 74 chr9 130260908 130260957 -12010487 - L1MCa LINE L1 -3843 2286 2237 1694 150 73 0 chr9 130260957 130261244 -12010200 - AluJb SINE Alu -4 308 1 316 204 46 74 chr9 130261244 130261302 -12010142 - L1MCa LINE L1 -3892 2237 2182 357 172 0 0 chr9 130261303 130261367 -12010077 - AluSq SINE Alu -118 185 134 2015 123 3 13 chr9 130261367 130261675 -12009769 - AluSx SINE Alu -7 305 1 937 295 112 38 chr9 130261733 130262207 -12009237 - L1MCa LINE L1 -5283 836 328 280 345 12 18 chr9 130262403 130262568 -12008876 - L1MCa LINE L1 -5953 166 3 410 267 82 29 chr9 130262568 130262774 -12008670 - MLT1J LTR MaLR -63 448 232 2153 93 0 0 chr9 130262798 130263109 -12008335 + AluSg SINE Alu 1 311 0 191 173 77 58 chr9 130263610 130263662 -12007782 + L2 LINE L2 3174 3226 -46 222 344 0 0 chr9 130263686 130263750 -12007694 - L2 LINE L2 -9 3263 3200 212 0 36 0 chr9 130263846 130263874 -12007570 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1904 113 4 0 chr9 130263877 130264152 -12007292 - AluSx SINE Alu -36 276 1 208 250 11 82 chr9 130265038 130265222 -12006222 + (TCTCTG)n Simple_repeat Simple_repeat 3 173 0 1261 137 95 28 chr9 130265741 130266026 -12005418 + L1MB4 LINE L1 5877 6180 0 1012 192 96 32 chr9 130266535 130266851 -12004593 - HsTC2 DNA Tc2 -36 1862 1525 294 233 58 12 chr9 130266870 130266956 -12004488 - HsTC2 DNA Tc2 -1799 99 10 2254 106 0 3 chr9 130266992 130267304 -12004140 - AluSx SINE Alu -1 311 1 21 0 0 0 chr9 130267380 130267401 -12004043 + AT_rich Low_complexity Low_complexity 1 21 0 293 211 22 11 chr9 130267903 130267993 -12003451 + L1MD3 LINE L1 7905 7995 0 291 322 70 0 chr9 130268536 130268651 -12002793 + MIR SINE MIR 32 154 -108 255 162 0 0 chr9 130269010 130269047 -12002397 - L3 LINE CR1 -17 1560 1524 232 250 0 42 chr9 130269047 130269058 -12002386 - MIR3 SINE MIR -21 187 142 2123 86 3 10 chr9 130269210 130269502 -12001942 - AluSg1 SINE Alu -19 290 1 1888 124 7 0 chr9 130269530 130269860 -12001584 - AluSq SINE Alu 0 332 1 2135 88 3 16 chr9 130269863 130270170 -12001274 - AluSc SINE Alu -6 303 1 2183 98 13 3 chr9 130270306 130270612 -12000832 + AluSx SINE Alu 1 309 -3 524 300 71 0 chr9 130270668 130270838 -12000606 + MIR SINE MIR 49 230 -32 2204 108 0 0 chr9 130270985 130271291 -12000153 - AluSg SINE Alu -4 306 1 4270 187 50 4 chr9 130271301 130272260 -11999184 - L1MB7 LINE L1 0 6184 5174 2055 125 3 0 chr9 130272343 130272647 -11998797 - AluSq SINE Alu -8 305 1 315 259 179 0 chr9 130273086 130273198 -11998246 - L1MB7 LINE L1 -2412 3734 3603 640 258 104 69 chr9 130273833 130273879 -11997565 - L1MEc LINE L1 -4709 1687 1644 2224 82 0 0 chr9 130273879 130274185 -11997259 + AluY SINE Alu 1 306 0 640 258 104 69 chr9 130274185 130274513 -11996931 - L1MEc LINE L1 -4752 1644 1299 246 288 49 0 chr9 130274517 130274680 -11996764 + (TATATG)n Simple_repeat Simple_repeat 3 173 0 * 489 246 0 0 chr9 130274571 130274742 -11996702 + (TA)n Simple_repeat Simple_repeat 1 171 0 1926 209 75 60 chr9 130274794 130275445 -11995999 - L1MEc LINE L1 -5147 1249 589 379 283 87 75 chr9 130275451 130275474 -11995970 - HAL1 LINE L1 -1190 1317 1296 24 0 0 0 chr9 130275474 130275498 -11995946 + AT_rich Low_complexity Low_complexity 1 24 0 379 283 87 75 chr9 130275498 130275783 -11995661 - HAL1 LINE L1 -1211 1296 982 1973 139 3 3 chr9 130276468 130276778 -11994666 - AluJb SINE Alu -2 310 1 2352 67 0 3 chr9 130276845 130277143 -11994301 - AluY SINE Alu -14 297 1 545 146 62 23 chr9 130277335 130277465 -11993979 - L1M4c LINE L1 -1543 5101 4967 824 149 0 64 chr9 130277465 130277481 -11993963 - AluJb SINE Alu -180 132 117 1354 179 52 42 chr9 130277481 130277788 -11993656 - AluJo SINE Alu -2 310 1 824 149 0 64 chr9 130277788 130277912 -11993532 - AluJb SINE Alu -195 117 1 2127 176 22 26 chr9 130277914 130278375 -11993069 - L1M4c LINE L1 -2184 4460 4002 627 212 21 42 chr9 130278403 130278592 -11992852 - L1M4c LINE L1 -3269 3375 3191 14827 122 30 31 chr9 130278611 130280053 -11991391 + Tigger1 DNA MER2_type 1 1442 -976 1513 195 7 7 chr9 130280053 130280355 -11991089 + AluJo SINE Alu 1 302 -10 14827 122 30 31 chr9 130280355 130280459 -11990985 + Tigger1 DNA MER2_type 1442 1545 -873 1936 126 0 35 chr9 130280459 130280776 -11990668 + AluSx SINE Alu 7 312 0 14827 122 30 31 chr9 130280776 130281127 -11990317 + Tigger1 DNA MER2_type 1545 1895 -523 1180 127 66 61 chr9 130281127 130281233 -11990211 - MER30 DNA MER1_type -1 229 125 2099 86 31 0 chr9 130281233 130281523 -11989921 - AluSq SINE Alu -14 299 1 1180 127 66 61 chr9 130281523 130281644 -11989800 - MER30 DNA MER1_type -105 125 1 14827 122 30 31 chr9 130281644 130281828 -11989616 + Tigger1 DNA MER2_type 1895 2078 -340 1874 161 10 0 chr9 130281828 130282132 -11989312 + AluJb SINE Alu 1 307 -5 14827 122 30 31 chr9 130282132 130282466 -11988978 + Tigger1 DNA MER2_type 2078 2418 0 3508 220 81 77 chr9 130282482 130283402 -11988042 - L1M4c LINE L1 -3507 3137 2223 1943 131 7 0 chr9 130283402 130283692 -11987752 - AluSx SINE Alu -20 292 1 3508 220 81 77 chr9 130283692 130284322 -11987122 - L1M4c LINE L1 -4421 2223 1597 1854 150 14 0 chr9 130284322 130284608 -11986836 - AluJb SINE Alu -22 290 1 3508 220 81 77 chr9 130284608 130284747 -11986697 - L1M4c LINE L1 -5047 1597 1460 1537 214 12 68 chr9 130284747 130285158 -11986286 - MLT1B LTR MaLR 0 390 3 3508 220 81 77 chr9 130285158 130285202 -11986242 - L1M4c LINE L1 -5184 1460 1418 2054 121 0 13 chr9 130285202 130285381 -11986063 - AluSx SINE Alu -1 311 136 2282 84 7 0 chr9 130285381 130285679 -11985765 - AluSq SINE Alu -13 300 1 2054 121 0 13 chr9 130285679 130285814 -11985630 - AluSx SINE Alu -176 136 1 2339 81 0 3 chr9 130285822 130286131 -11985313 - AluY SINE Alu -3 308 1 3508 220 81 77 chr9 130286131 130286583 -11984861 - L1M4c LINE L1 -5232 1412 825 358 336 65 34 chr9 130286723 130287047 -11984397 - L1M4c LINE L1 -6049 597 13 2140 82 3 33 chr9 130287093 130287398 -11984046 + AluSp SINE Alu 1 296 -17 279 240 39 29 chr9 130287438 130287542 -11983902 + L1P LINE L1 4901 5005 -1141 2324 85 0 0 chr9 130287543 130287850 -11983594 - AluY SINE Alu -4 307 1 799 136 0 8 chr9 130287879 130288024 -11983420 + FLAM_C SINE Alu 2 145 0 198 0 0 0 chr9 130288024 130288046 -11983398 + (TTA)n Simple_repeat Simple_repeat 2 23 0 447 313 62 43 chr9 130288199 130288521 -11982923 + L1MC4a LINE L1 5260 5595 -526 545 167 21 21 chr9 130288528 130288624 -11982820 + AluJo SINE Alu 126 221 -91 777 277 74 29 chr9 130288628 130289112 -11982332 + L1MC4a LINE L1 5599 6100 -21 287 303 96 27 chr9 130289416 130289638 -11981806 + MIR3 SINE MIR 3 256 -6 1968 127 3 13 chr9 130289731 130290031 -11981413 + AluJo SINE Alu 1 297 -15 276 316 46 7 chr9 130290512 130290664 -11980780 + L2 LINE L2 2820 2977 -336 857 204 6 19 chr9 130290725 130290882 -11980562 + FRAM SINE Alu 1 155 -11 1484 137 3 102 chr9 130290886 130291043 -11980401 + AluJo SINE Alu 2 112 -200 2117 93 7 23 chr9 130291043 130291343 -11980101 + AluSq SINE Alu 6 300 -13 1484 137 3 102 chr9 130291343 130291507 -11979937 + AluJo SINE Alu 112 291 -21 22 35 0 0 chr9 130294800 130294829 -11976615 + AT_rich Low_complexity Low_complexity 1 29 0 34 42 0 0 chr9 130295063 130295111 -11976333 + AT_rich Low_complexity Low_complexity 1 48 0 2310 84 0 0 chr9 130296189 130296487 -11974957 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr9 130297206 130297228 -11974216 + AT_rich Low_complexity Low_complexity 1 22 0 1334 242 106 5 chr9 130297852 130298220 -11973224 + LTR33 LTR ERVL 115 519 -2 268 304 0 0 chr9 130298227 130298296 -11973148 - MIR SINE MIR -114 148 80 2106 88 21 0 chr9 130299467 130299752 -11971692 + AluSx SINE Alu 2 292 -20 23 0 0 0 chr9 130299752 130299775 -11971669 + AT_rich Low_complexity Low_complexity 1 23 0 289 290 43 0 chr9 130300145 130300238 -11971206 + MIR SINE MIR 138 234 -28 335 308 55 7 chr9 130301574 130301720 -11969724 - MIR SINE MIR -11 251 99 1907 128 0 13 chr9 130302414 130302720 -11968724 - AluSx SINE Alu -10 302 1 22 0 0 0 chr9 130302920 130302942 -11968502 + AT_rich Low_complexity Low_complexity 1 22 0 1811 122 0 44 chr9 130303847 130304142 -11967302 - AluSx SINE Alu -30 282 1 2168 74 0 7 chr9 130304285 130304569 -11966875 + AluSp SINE Alu 19 300 -13 191 242 197 0 chr9 130304649 130304715 -11966729 - L2 LINE L2 0 3272 3194 2319 77 0 0 chr9 130304885 130305182 -11966262 - AluSg SINE Alu -13 297 1 376 259 69 35 chr9 130305542 130305658 -11965786 - L2 LINE L2 -2 3311 3192 232 243 288 0 chr9 130305929 130306040 -11965404 - MIR SINE MIR -20 242 100 1665 152 18 0 chr9 130306655 130306932 -11964512 - AluJb SINE Alu -20 292 11 23 33 0 0 chr9 130307464 130307494 -11963950 + GC_rich Low_complexity Low_complexity 1 30 0 359 229 84 0 chr9 130307760 130307843 -11963601 - L2 LINE L2 -15 3257 3168 431 320 33 13 chr9 130308048 130308198 -11963246 - MIR SINE MIR -2 260 108 471 299 0 20 chr9 130308996 130309143 -11962301 - MIR SINE MIR -40 222 79 1230 61 0 112 chr9 130309559 130309755 -11961689 + AluY SINE Alu 1 174 -137 967 178 0 35 chr9 130309755 130309957 -11961487 - AluJo SINE Alu -117 195 1 805 194 172 22 chr9 130309959 130310186 -11961258 + L1ME3A LINE L1 5910 6170 0 2493 51 0 3 chr9 130311132 130311444 -11960000 - AluY SINE Alu 0 311 1 1657 161 17 7 chr9 130311927 130312218 -11959226 + AluSx SINE Alu 1 294 -18 2233 105 0 3 chr9 130312221 130312527 -11958917 + AluSx SINE Alu 1 305 -7 2144 105 3 0 chr9 130313371 130313666 -11957778 - AluSx SINE Alu -16 296 1 826 161 16 0 chr9 130313677 130313801 -11957643 - FLAM_C SINE Alu -7 126 1 213 65 0 0 chr9 130313823 130313854 -11957590 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1949 106 22 0 chr9 130313857 130314132 -11957312 - AluSx SINE Alu -31 281 1 359 297 93 6 chr9 130314472 130314654 -11956790 + L1MC4 LINE L1 7844 8041 -1 446 264 80 49 chr9 130315203 130315589 -11955855 + L1M4 LINE L1 3656 4053 -2093 252 317 0 0 chr9 130315621 130315681 -11955763 + G-rich Low_complexity Low_complexity 1 60 0 373 247 66 123 chr9 130316034 130316171 -11955273 + L2 LINE L2 3100 3220 -93 2015 108 6 19 chr9 130316171 130316486 -11954958 - AluSx SINE Alu -1 311 1 373 247 66 123 chr9 130316486 130316575 -11954869 + L2 LINE L2 3220 3313 0 2327 95 0 0 chr9 130316812 130317116 -11954328 + AluSx SINE Alu 1 304 -8 180 111 0 0 chr9 130317329 130317356 -11954088 + (A)n Simple_repeat Simple_repeat 1 27 0 198 292 31 15 chr9 130318027 130318092 -11953352 - MIR SINE MIR -112 150 85 2189 96 3 3 chr9 130318316 130318617 -11952827 - AluSc SINE Alu -8 301 1 284 268 134 0 chr9 130318819 130318916 -11952528 - L2 LINE L2 0 3272 3163 356 230 188 42 chr9 130318957 130319122 -11952322 - L2 LINE L2 -5 3308 3120 221 101 72 29 chr9 130319391 130319446 -11951998 + CT-rich Low_complexity Low_complexity 2 62 -11 1739 153 29 26 chr9 130319446 130319754 -11951690 - AluJo SINE Alu -3 309 1 221 101 72 29 chr9 130319754 130319767 -11951677 + CT-rich Low_complexity Low_complexity 62 73 0 378 249 179 49 chr9 130319779 130319999 -11951445 - MIR SINE MIR -10 252 11 1706 157 3 10 chr9 130320857 130321156 -11950288 - AluJb SINE Alu -15 297 1 683 214 61 26 chr9 130321966 130322176 -11949268 + MIR SINE MIR 36 259 -3 270 283 57 0 chr9 130322788 130322894 -11948550 + MIR3 SINE MIR 85 196 -12 243 318 24 0 chr9 130323155 130323240 -11948204 + L2 LINE L2 2578 2664 -650 207 242 20 91 chr9 130323691 130323790 -11947654 - L2 LINE L2 -636 2678 2587 264 271 35 56 chr9 130323921 130324065 -11947379 + L2 LINE L2 2919 3059 -213 521 290 134 14 chr9 130324498 130324715 -11946729 + MIR SINE MIR 20 262 0 604 234 22 7 chr9 130325525 130325662 -11945782 + MIR SINE MIR 11 149 -113 233 226 247 0 chr9 130326675 130326768 -11944676 - L2 LINE L2 -17 3255 3140 231 303 11 34 chr9 130326876 130326965 -11944479 + L3 LINE CR1 1483 1569 -8 2287 113 3 0 chr9 130327076 130327377 -11944067 + AluSx SINE Alu 1 302 -10 335 258 187 46 chr9 130328351 130328917 -11942527 - L1MC4a LINE L1 -1903 5905 5260 363 281 152 59 chr9 130328918 130329174 -11942270 - L1MC4a LINE L1 -881 5265 4986 318 269 0 0 chr9 130330438 130330516 -11940928 - L1MC/D LINE L1 -2163 5645 5568 447 270 41 20 chr9 130330690 130330857 -11940587 + MIR SINE MIR 88 257 -5 375 243 105 13 chr9 130331866 130332018 -11939426 + L1MC4a LINE L1 5254 5419 -2389 2193 111 0 0 chr9 130332018 130332306 -11939138 + AluSx SINE Alu 1 288 -24 349 297 164 33 chr9 130332406 130332634 -11938810 + L1MC4a LINE L1 5435 5632 -2176 297 0 0 0 chr9 130332634 130332667 -11938777 + (TG)n Simple_repeat Simple_repeat 1 33 0 349 297 164 33 chr9 130332667 130332805 -11938639 + L1MC4a LINE L1 5632 5849 -1959 1624 58 0 0 chr9 130332809 130332998 -11938446 - AluSc SINE Alu -6 303 115 498 95 0 0 chr9 130332999 130333062 -11938382 - AluSc SINE Alu -227 82 20 241 265 24 12 chr9 130333144 130333227 -11938217 + L1ME4a LINE L1 5974 6057 -64 23 54 0 0 chr9 130333248 130333285 -11938159 + AT_rich Low_complexity Low_complexity 1 37 0 1532 153 31 44 chr9 130333285 130333407 -11938037 + AluJo SINE Alu 1 123 -189 2288 75 24 14 chr9 130333407 130333702 -11937742 - AluSq SINE Alu -15 298 1 1532 153 31 44 chr9 130333702 130333873 -11937571 + AluJo SINE Alu 123 290 -22 1910 169 0 0 chr9 130334720 130335015 -11936429 - AluSx SINE Alu -17 295 1 2065 92 11 7 chr9 130335155 130335437 -11936007 - AluSx SINE Alu -29 283 1 2447 61 6 29 chr9 130335569 130335881 -11935563 - AluY SINE Alu -6 305 1 189 0 0 0 chr9 130335925 130335946 -11935498 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 277 305 16 80 chr9 130336218 130336405 -11935039 + L2 LINE L2 2886 3060 -253 1058 198 127 7 chr9 130336589 130336872 -11934572 + MER33 DNA MER1_type 1 317 -7 257 270 88 25 chr9 130336879 130337038 -11934406 - L1MC4a LINE L1 -1488 4658 4490 360 280 123 62 chr9 130337108 130337437 -11934007 - L1MC4a LINE L1 -1769 4377 4032 2174 144 0 0 chr9 130337711 130338023 -11933421 - AluSx SINE Alu 0 312 1 203 96 58 19 chr9 130340356 130340408 -11931036 + (TA)n Simple_repeat Simple_repeat 2 55 0 208 147 0 0 chr9 130340950 130340984 -11930460 + (T)n Simple_repeat Simple_repeat 1 34 0 194 0 0 37 chr9 130341782 130341809 -11929635 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 180 0 0 0 chr9 130343454 130343474 -11927970 + (TTG)n Simple_repeat Simple_repeat 2 21 0 201 147 0 0 chr9 130343660 130343694 -11927750 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr9 130343972 130343994 -11927450 + AT_rich Low_complexity Low_complexity 1 22 0 312 355 116 28 chr9 130345190 130345508 -11925936 + L2 LINE L2 2966 3311 -2 224 289 134 10 chr9 130345766 130345863 -11925581 + MIR SINE MIR 19 127 -81 1983 143 21 0 chr9 130346320 130346607 -11924837 - AluJb SINE Alu -8 304 12 2390 89 0 3 chr9 130346616 130346920 -11924524 - AluY SINE Alu -8 303 1 1004 104 15 0 chr9 130346924 130347058 -11924386 - AluJo SINE Alu -176 136 1 1574 171 16 4 chr9 130347337 130347594 -11923850 - AluJb SINE Alu -19 293 34 251 256 232 8 chr9 130347784 130347909 -11923535 - L3 LINE CR1 -124 1453 1301 797 237 6 6 chr9 130348046 130348215 -11923229 - AluJb SINE Alu -110 202 34 251 256 232 8 chr9 130348406 130348531 -11922913 - L3 LINE CR1 -124 1453 1301 2451 66 16 0 chr9 130348554 130348858 -11922586 + AluSc SINE Alu 1 309 0 2239 117 3 0 chr9 130350401 130350709 -11920735 - AluSc SINE Alu 0 309 1 2145 114 0 54 chr9 130350711 130351028 -11920416 - AluSg SINE Alu -10 300 1 29 0 0 0 chr9 130351031 130351060 -11920384 + AT_rich Low_complexity Low_complexity 1 29 0 770 287 143 23 chr9 130351273 130351757 -11919687 + L1ME4a LINE L1 5285 5826 -295 841 138 0 0 chr9 130351770 130351886 -11919558 + FLAM_C SINE Alu 12 127 -16 1978 149 7 0 chr9 130352031 130352333 -11919111 + AluSx SINE Alu 1 304 -8 2123 132 0 0 chr9 130352416 130352712 -11918732 - AluSx SINE Alu -15 297 2 199 161 0 0 chr9 130352911 130352942 -11918502 - L2 LINE L2 -8 3305 3275 616 249 35 51 chr9 130353297 130353331 -11918113 - MIR SINE MIR -11 251 218 2290 88 27 10 chr9 130353331 130353626 -11917818 - AluSx SINE Alu -12 300 1 616 249 35 51 chr9 130353626 130353788 -11917656 - MIR SINE MIR -44 218 58 750 282 122 31 chr9 130353824 130354243 -11917201 - L2 LINE L2 -30 3283 2827 2480 62 0 20 chr9 130354327 130354633 -11916811 - AluY SINE Alu -11 300 1 2057 125 14 3 chr9 130354734 130355023 -11916421 - AluJb SINE Alu -20 292 1 181 325 75 12 chr9 130355335 130355415 -11916029 - L2 LINE L2 -39 3233 3149 2246 108 20 0 chr9 130355447 130355743 -11915701 + AluSx SINE Alu 1 302 -10 460 260 80 52 chr9 130355880 130356084 -11915360 + LTR50 LTR ERVL 536 733 -62 2055 155 0 0 chr9 130356084 130356394 -11915050 - AluJo SINE Alu -2 310 1 2570 69 0 0 chr9 130356396 130356702 -11914742 - AluY SINE Alu -5 306 1 460 260 80 52 chr9 130356702 130356744 -11914700 + LTR50 LTR ERVL 733 792 -3 638 324 60 27 chr9 130357069 130357715 -11913729 + ERVL LTR ERVL 476 1204 -4560 465 299 51 80 chr9 130357705 130357783 -11913661 + ERVL LTR ERVL 1442 1521 -3475 * 2065 103 0 67 chr9 130357783 130357934 -11913510 + AluSx SINE Alu 1 161 -151 2245 79 18 0 chr9 130357934 130358234 -11913210 + AluSx SINE Alu 1 305 0 387 0 0 0 chr9 130358233 130358276 -11913168 + (CA)n Simple_repeat Simple_repeat 2 44 0 2065 103 0 67 chr9 130358234 130358435 -11913009 + AluSx SINE Alu 161 291 -21 465 299 51 80 chr9 130358435 130358631 -11912813 + ERVL LTR ERVL 1521 1721 -3275 2353 92 0 7 chr9 130358631 130358935 -11912509 + AluSg1 SINE Alu 1 302 -7 1612 101 9 0 chr9 130358935 130359154 -11912290 + AluSp SINE Alu 75 295 -18 465 299 51 80 chr9 130359154 130359309 -11912135 + ERVL LTR ERVL 1719 1849 -3147 1922 139 28 9 chr9 130359354 130359677 -11911767 - MLT1A1 LTR MaLR 0 365 37 2107 104 3 42 chr9 130359677 130359985 -11911459 + AluSx SINE Alu 1 296 -16 1905 144 14 0 chr9 130359997 130360274 -11911170 + AluSx SINE Alu 1 281 -31 2167 119 10 6 chr9 130360302 130360613 -11910831 + AluSx SINE Alu 1 312 0 295 119 0 0 chr9 130360613 130360655 -11910789 - MLT1A1 LTR MaLR -325 49 8 1530 276 25 14 chr9 130360692 130361126 -11910318 + ERVL LTR ERVL 2023 2461 -3303 1147 251 76 20 chr9 130361187 130361541 -11909903 - MER21B LTR ERV1 -84 779 406 870 273 78 68 chr9 130361541 130362178 -11909266 - PABL_B LTR ERV1 0 667 24 1228 228 21 14 chr9 130362263 130362552 -11908892 - MER21B LTR ERV1 -475 388 98 481 198 0 0 chr9 130362606 130362692 -11908752 - MER21B LTR ERV1 -773 90 5 692 250 47 91 chr9 130362704 130362828 -11908616 + ERVL LTR ERVL 2475 2603 -3161 2552 87 0 0 chr9 130362828 130363138 -11908306 - AluSg SINE Alu 0 310 1 692 250 47 91 chr9 130363138 130363333 -11908111 + ERVL LTR ERVL 2603 2780 -2984 492 191 122 0 chr9 130363341 130363456 -11907988 - REP3 LTR ERV 0 562 434 1323 165 84 72 chr9 130363485 130363726 -11907718 - REP3 LTR ERV -237 325 78 2279 108 3 3 chr9 130363726 130364033 -11907411 - AluSc SINE Alu -2 307 1 1323 165 84 72 chr9 130364033 130364112 -11907332 - REP3 LTR ERV -484 78 1 2262 274 50 7 chr9 130364123 130364805 -11906639 + ERVL LTR ERVL 2796 3506 -2258 2423 75 3 3 chr9 130364805 130365098 -11906346 + AluSg SINE Alu 1 293 -17 2451 175 27 44 chr9 130365098 130365179 -11906265 + MER82 DNA MER2_type 144 225 -428 2197 107 0 0 chr9 130365179 130365494 -11905950 + AluSx SINE Alu 1 315 0 2451 175 27 44 chr9 130365494 130365930 -11905514 + MER82 DNA MER2_type 225 653 0 1428 329 62 30 chr9 130365990 130366088 -11905356 - HERV16 LTR ERVL -3885 1111 1018 2117 107 7 10 chr9 130366088 130366386 -11905058 + AluSx SINE Alu 1 297 -15 1428 329 62 30 chr9 130366386 130367080 -11904364 - HERV16 LTR ERVL -3978 1018 294 244 267 17 0 chr9 130367343 130367403 -11904041 - LTR16B LTR ERVL 0 464 404 2337 92 3 0 chr9 130367403 130367697 -11903747 + AluSg SINE Alu 1 295 -15 879 314 37 14 chr9 130367719 130368073 -11903371 - LTR16B LTR ERVL -102 362 1 522 262 28 44 chr9 130368075 130368266 -11903178 - MIR SINE MIR -64 144 20 2205 199 113 48 chr9 130368537 130368807 -11902637 - MLT1E LTR MaLR 0 593 342 2208 106 0 0 chr9 130368807 130369140 -11902304 - AluSg SINE Alu 0 333 1 2205 199 113 48 chr9 130369140 130369425 -11902019 - MLT1E LTR MaLR -251 342 1 2141 143 0 7 chr9 130369758 130370065 -11901379 - AluSx SINE Alu -7 305 1 2157 98 49 3 chr9 130370093 130370380 -11901064 + AluSg SINE Alu 1 300 -10 2089 134 16 0 chr9 130370422 130370729 -11900715 + AluSx SINE Alu 1 312 0 3441 164 102 20 chr9 130370760 130371293 -11900151 - L1MB8 LINE L1 -56 6122 5511 1810 129 101 7 chr9 130371293 130371579 -11899865 - AluSq SINE Alu 0 313 1 3441 164 102 20 chr9 130371579 130371779 -11899665 - L1MB8 LINE L1 -667 5511 5329 714 306 35 15 chr9 130371840 130372101 -11899343 + L2 LINE L2 3048 3313 0 499 216 86 29 chr9 130372313 130372452 -11898992 - MIR SINE MIR 0 262 116 2431 89 6 10 chr9 130372452 130372765 -11898679 + AluSx SINE Alu 1 312 0 973 134 7 0 chr9 130372905 130373047 -11898397 - AluY SINE Alu -96 215 73 1936 131 3 14 chr9 130373047 130373338 -11898106 - AluJb SINE Alu -24 288 1 208 265 73 0 chr9 130373692 130373760 -11897684 + MIR SINE MIR 47 119 -143 405 233 52 109 chr9 130373780 130373973 -11897471 + MIR3 SINE MIR 23 204 -4 205 100 0 50 chr9 130374436 130374476 -11896968 + (CCCGG)n Simple_repeat Simple_repeat 4 41 0 216 0 0 0 chr9 130374610 130374634 -11896810 + (CGGGG)n Simple_repeat Simple_repeat 2 25 0 25 83 0 0 chr9 130374720 130374780 -11896664 + GC_rich Low_complexity Low_complexity 1 60 0 249 269 16 48 chr9 130374814 130375000 -11896444 + G-rich Low_complexity Low_complexity 1 180 0 2207 94 3 13 chr9 130376079 130376378 -11895066 + AluSx SINE Alu 1 296 -16 511 300 44 17 chr9 130377052 130377232 -11894212 + MIR SINE MIR 8 192 -70 406 324 0 0 chr9 130377377 130377488 -11893956 + MIR3 SINE MIR 83 193 -15 295 220 17 0 chr9 130377572 130377631 -11893813 + L2 LINE L2 3213 3272 0 1685 128 62 4 chr9 130377927 130378201 -11893243 - AluJb SINE Alu -21 291 2 2321 57 10 0 chr9 130378255 130378551 -11892893 - AluSp SINE Alu -14 299 1 791 321 24 8 chr9 130379036 130379282 -11892162 + MIR SINE MIR 12 261 -1 207 226 48 65 chr9 130379858 130379920 -11891524 - L2 LINE L2 -5 3308 3248 281 341 98 0 chr9 130380264 130380396 -11891048 - L2 LINE L2 -3 3269 3125 682 255 24 19 chr9 130380439 130380651 -11890793 + MIR SINE MIR 13 225 -37 494 311 67 38 chr9 130381191 130381429 -11890015 + MIR SINE MIR 6 250 -12 21 0 0 0 chr9 130381830 130381851 -11889593 + AT_rich Low_complexity Low_complexity 1 21 0 340 272 11 11 chr9 130382410 130382502 -11888942 + L2 LINE L2 2711 2802 -512 482 338 38 0 chr9 130382517 130382674 -11888770 + L2 LINE L2 3110 3272 0 792 206 55 6 chr9 130383242 130383407 -11888037 - FAM SINE Alu -2 173 1 317 292 12 99 chr9 130384339 130384426 -11887018 - L2 LINE L2 0 3313 3220 2164 84 0 3 chr9 130384426 130384711 -11886733 + AluSp SINE Alu 1 284 -29 267 54 0 0 chr9 130384714 130384751 -11886693 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 317 292 12 99 chr9 130384751 130384830 -11886614 - L2 LINE L2 -95 3218 3158 2002 131 0 7 chr9 130384847 130385152 -11886292 + AluSx SINE Alu 1 303 -9 544 235 10 0 chr9 130385159 130385261 -11886183 + FLAM_A SINE Alu 6 108 -34 230 105 105 0 chr9 130385261 130385299 -11886145 + AluSp SINE Alu 269 310 -10 328 317 134 5 chr9 130385367 130385553 -11885891 - L2 LINE L2 -209 3063 2854 189 280 20 0 chr9 130385798 130385848 -11885596 - L2 LINE L2 -1 3271 3221 255 265 143 122 chr9 130388112 130388350 -11883094 + L2 LINE L2 3014 3256 -16 312 248 101 37 chr9 130388802 130388911 -11882533 - MIR SINE MIR -126 136 21 23 0 0 0 chr9 130389573 130389596 -11881848 + AT_rich Low_complexity Low_complexity 1 23 0 418 330 26 11 chr9 130389597 130389788 -11881656 + HAL1 LINE L1 1474 1667 -840 1916 127 3 10 chr9 130389901 130390192 -11881252 - AluSx SINE Alu -15 297 9 1042 296 72 9 chr9 130390529 130390860 -11880584 - MLT1J LTR MaLR -47 464 113 402 330 48 29 chr9 130390961 130391234 -11880210 + L1ME LINE L1 5462 5739 -382 224 317 96 62 chr9 130391770 130391978 -11879466 - L2 LINE L2 -114 3158 2944 235 181 108 121 chr9 130392378 130392461 -11878983 - L2 LINE L2 0 3313 3232 243 324 27 0 chr9 130392487 130392561 -11878883 + MIR SINE MIR 154 229 -33 * 578 224 105 54 chr9 130392526 130392753 -11878691 - MIR SINE MIR -10 252 18 1853 69 0 8 chr9 130393490 130393735 -11877709 - AluY SINE Alu -14 297 55 347 291 77 33 chr9 130393956 130394138 -11877306 - L1ME4a LINE L1 -8 6113 5924 1939 120 20 10 chr9 130394214 130394514 -11876930 + L1MA2 LINE L1 6002 6304 0 648 265 82 27 chr9 130394543 130394762 -11876682 + L2 LINE L2 3078 3308 -5 230 269 26 13 chr9 130394791 130394869 -11876575 - L1ME4a LINE L1 -1949 5859 5781 430 313 6 31 chr9 130394984 130395147 -11876297 - MIR SINE MIR -25 237 79 457 301 98 32 chr9 130395216 130395989 -11875455 - L1ME4a LINE L1 -924 5222 4399 2193 110 0 13 chr9 130396184 130396492 -11874952 - AluSx SINE Alu -8 304 1 1023 194 217 0 chr9 130397686 130397939 -11873505 - L1MD3 LINE L1 -10 7985 7678 2065 117 0 3 chr9 130398247 130398547 -11872897 - AluSg SINE Alu -11 299 1 481 266 123 0 chr9 130399030 130399184 -11872260 - L2 LINE L2 -600 2714 2542 2038 105 37 0 chr9 130399312 130399606 -11871838 + AluSx SINE Alu 1 305 -7 396 323 34 38 chr9 130400245 130400363 -11871081 - MIR SINE MIR 0 262 144 1586 112 13 0 chr9 130400363 130400596 -11870848 + MER46A DNA MER2_type 1 236 0 396 323 34 38 chr9 130400596 130400712 -11870732 - MIR SINE MIR -118 144 29 2071 108 0 17 chr9 130401283 130401598 -11869846 + AluSx SINE Alu 1 310 0 242 298 77 19 chr9 130401640 130401744 -11869700 + L2 LINE L2 3150 3259 -13 8006 24 0 0 chr9 130401866 130403556 -11867888 - L1PA3 LINE L1 -1 6154 4461 13557 31 2 2 chr9 130403556 130405180 -11866264 + L1PA3 LINE L1 2830 4453 -1693 243 0 0 0 chr9 130405679 130405706 -11865738 + (GA)n Simple_repeat Simple_repeat 1 27 0 309 186 0 0 chr9 130405706 130405776 -11865668 + (TG)n Simple_repeat Simple_repeat 1 70 0 285 210 0 0 chr9 130406391 130406453 -11864991 + (TG)n Simple_repeat Simple_repeat 2 63 0 293 176 72 0 chr9 130406620 130406713 -11864731 + MIR SINE MIR 100 206 -2 240 301 82 14 chr9 130406870 130406943 -11864501 + L2 LINE L2 3181 3258 -55 1064 256 145 41 chr9 130407250 130407549 -11863895 + L2 LINE L2 2407 2674 -639 1893 111 0 70 chr9 130407549 130407864 -11863580 + AluSx SINE Alu 1 293 -19 1064 256 145 41 chr9 130407864 130408330 -11863114 + L2 LINE L2 2674 3264 -49 1713 164 98 59 chr9 130408341 130408780 -11862664 + Charlie4a DNA MER1_type 36 491 -17 189 356 11 35 chr9 130409868 130409955 -11861489 - MIR SINE MIR -1 261 177 551 238 159 16 chr9 130409985 130410174 -11861270 + MIR SINE MIR 15 230 -32 1469 152 55 28 chr9 130410904 130411193 -11860251 + AluJo SINE Alu 7 303 -9 189 0 0 0 chr9 130411193 130411214 -11860230 + (TA)n Simple_repeat Simple_repeat 1 21 0 248 179 0 0 chr9 130411214 130411270 -11860174 - L1MC4 LINE L1 -1339 6703 6648 2769 234 57 42 chr9 130411349 130412133 -11859311 - L1ME1 LINE L1 -1 6165 5366 2021 141 3 0 chr9 130412133 130412438 -11859006 - AluSx SINE Alu -6 306 1 2769 234 57 42 chr9 130412438 130412494 -11858950 - L1ME1 LINE L1 -800 5366 5312 452 288 100 30 chr9 130412684 130413014 -11858430 - L1MC4 LINE L1 0 8042 7690 509 79 0 13 chr9 130413233 130413309 -11858135 + (TCCC)n Simple_repeat Simple_repeat 1 75 0 2143 107 10 0 chr9 130413309 130413608 -11857836 - AluSx SINE Alu -10 302 1 240 339 102 21 chr9 130413797 130414130 -11857314 + L2 LINE L2 2305 2664 -650 412 213 75 0 chr9 130414373 130414467 -11856977 + MIR SINE MIR 108 208 -54 1777 151 28 0 chr9 130414596 130414887 -11856557 + AluJo SINE Alu 1 299 -13 913 272 133 17 chr9 130414887 130415188 -11856256 - MER102b DNA MER1_type -4 337 2 277 265 8 8 chr9 130416405 130416522 -11854922 + (TA)n Simple_repeat Simple_repeat 2 118 0 262 220 0 0 chr9 130416524 130416574 -11854870 + L2 LINE L2 3264 3313 0 947 279 33 12 chr9 130416659 130416903 -11854541 - MIR SINE MIR -13 249 1 192 171 63 162 chr9 130417117 130417149 -11854295 + MER5B DNA MER1_type 33 67 -111 2061 109 0 35 chr9 130417149 130417461 -11853983 + AluSx SINE Alu 1 301 -11 192 171 63 162 chr9 130417461 130417539 -11853905 + MER5B DNA MER1_type 67 132 -46 * 564 249 144 15 chr9 130417522 130417723 -11853721 - MIR SINE MIR -34 228 2 510 307 69 5 chr9 130418607 130418796 -11852648 + MIR SINE MIR 49 249 -13 271 263 69 31 chr9 130419105 130419265 -11852179 + L1ME4a LINE L1 5727 5892 -229 1711 160 13 20 chr9 130419310 130419616 -11851828 + AluJo SINE Alu 1 304 -8 386 215 131 98 chr9 130419639 130419853 -11851591 + L1ME4a LINE L1 5899 6119 -2 732 293 90 32 chr9 130420277 130420617 -11850827 + L2 LINE L2 2733 3166 -147 1575 201 0 3 chr9 130420617 130420911 -11850533 - AluJb SINE Alu -19 293 1 732 293 90 32 chr9 130420911 130421069 -11850375 + L2 LINE L2 3166 3313 0 2224 98 0 13 chr9 130421073 130421378 -11850066 - AluSc SINE Alu -8 301 1 286 297 84 10 chr9 130421383 130421530 -11849914 - MIR SINE MIR -61 147 34 666 309 42 5 chr9 130421552 130421769 -11849675 - MIR SINE MIR 0 262 38 1304 175 18 54 chr9 130421778 130421842 -11849602 - MER33 DNA MER1_type -2261 324 259 2304 81 3 0 chr9 130421842 130422139 -11849305 + AluSp SINE Alu 3 300 -13 1304 175 18 54 chr9 130422139 130422317 -11849127 - MER33 DNA MER1_type -2326 259 95 905 210 0 12 chr9 130422317 130422479 -11848965 - FAM SINE Alu -15 160 1 1304 175 18 54 chr9 130422479 130422566 -11848878 - MER33 DNA MER1_type -2490 95 6 207 69 0 0 chr9 130423690 130423719 -11847725 + (TG)n Simple_repeat Simple_repeat 1 29 0 669 298 30 60 chr9 130424181 130424752 -11846692 + HAL1b LINE L1 71 624 -724 301 339 27 36 chr9 130424964 130425076 -11846368 + L1MC4a LINE L1 6476 6586 -1222 330 203 16 0 chr9 130425079 130425143 -11846301 + L1MC5 LINE L1 6698 6762 -1199 357 324 136 36 chr9 130425280 130425944 -11845500 - L2 LINE L2 -338 2976 2247 206 217 43 0 chr9 130425945 130425991 -11845453 - MER5A DNA MER1_type 0 189 142 199 301 120 37 chr9 130426051 130426267 -11845177 - L2 LINE L2 -1065 2249 2016 181 211 0 39 chr9 130427402 130427454 -11843990 + MIR SINE MIR 36 85 -177 2276 120 0 0 chr9 130427461 130427769 -11843675 - AluSq SINE Alu -5 308 1 481 268 89 34 chr9 130427778 130427957 -11843487 + MIR SINE MIR 73 261 -1 2311 88 0 38 chr9 130428313 130428631 -11842813 - AluSp SINE Alu -7 306 1 1454 186 55 21 chr9 130428708 130428998 -11842446 - AluJo SINE Alu -12 300 1 30 27 0 0 chr9 130429023 130429060 -11842384 + AT_rich Low_complexity Low_complexity 1 37 0 1652 163 9 66 chr9 130429306 130429626 -11841818 - AluSx SINE Alu -10 302 1 689 251 114 13 chr9 130429811 130430160 -11841284 - MLT1J LTR MaLR -14 497 71 2368 172 19 15 chr9 130430193 130430658 -11840786 + L1MB7 LINE L1 5699 6165 -19 26 64 0 0 chr9 130430658 130430705 -11840739 + AT_rich Low_complexity Low_complexity 1 47 0 1516 224 63 49 chr9 130431071 130431544 -11839900 + L1ME3A LINE L1 5455 5934 -236 271 228 31 24 chr9 130431614 130431741 -11839703 + Charlie7 DNA MER1_type 2479 2606 -6 272 230 30 50 chr9 130432713 130432813 -11838631 - MIR SINE MIR -95 113 16 248 219 0 61 chr9 130433040 130433122 -11838322 + L1MC5 LINE L1 7453 7529 -432 2397 82 3 0 chr9 130433122 130433415 -11838029 + AluSg SINE Alu 1 294 -16 1516 197 7 14 chr9 130433425 130433714 -11837730 + AluJo SINE Alu 1 287 -25 258 32 0 0 chr9 130433714 130433745 -11837699 + (TAGG)n Simple_repeat Simple_repeat 1 31 0 1634 142 25 4 chr9 130433928 130434203 -11837241 - L1MB2 LINE L1 -3 6168 5888 1979 122 20 10 chr9 130434219 130434513 -11836931 - AluSx SINE Alu -15 297 1 512 200 7 0 chr9 130436416 130436566 -11834878 + (CA)n Simple_repeat Simple_repeat 1 151 0 324 315 137 5 chr9 130436577 130436774 -11834670 - MIR SINE MIR -14 248 26 197 184 0 0 chr9 130437076 130437114 -11834330 - MER5C DNA MER1_type -3 321 284 460 235 17 17 chr9 130437180 130437299 -11834145 - MER5C DNA MER1_type -204 120 2 758 138 57 0 chr9 130438300 130438423 -11833021 + FLAM_C SINE Alu 1 130 -3 862 116 16 0 chr9 130438604 130438725 -11832719 + AluSg/x SINE Alu 174 296 -14 354 61 0 0 chr9 130439344 130439393 -11832051 + (TG)n Simple_repeat Simple_repeat 2 50 0 438 212 5 143 chr9 130439907 130440110 -11831334 + MER5B DNA MER1_type 1 175 -3 398 282 68 37 chr9 130440470 130440633 -11830811 - MER5B DNA MER1_type -7 171 4 228 234 39 26 chr9 130441204 130441281 -11830163 + L3 LINE CR1 1192 1269 -308 496 286 47 28 chr9 130441685 130441854 -11829590 - MIR SINE MIR -14 248 73 2665 195 46 2 chr9 130441854 130442373 -11829071 - MLT1F LTR MaLR 0 542 1 496 286 47 28 chr9 130442373 130442416 -11829028 - MIR SINE MIR -189 73 32 686 258 0 11 chr9 130442424 130442606 -11828838 + MIR SINE MIR 57 236 -26 209 281 18 0 chr9 130442606 130442663 -11828781 - MIR SINE MIR 0 262 205 243 250 0 0 chr9 130442681 130442733 -11828711 + (TTG)n Simple_repeat Simple_repeat 3 54 0 2293 95 0 0 chr9 130442871 130443339 -11828105 - AluSq SINE Alu 0 468 1 594 278 116 56 chr9 130443410 130444003 -11827441 - L1MC5 LINE L1 -71 7890 7262 263 284 34 0 chr9 130444107 130444195 -11827249 - L1MC4a LINE L1 -632 7176 7086 1616 197 13 7 chr9 130444196 130444505 -11826939 - AluJo SINE Alu -1 311 1 273 260 13 0 chr9 130444558 130444635 -11826809 - L1MC5 LINE L1 -909 7052 6975 1388 256 38 13 chr9 130444688 130445083 -11826361 - L1MC4a LINE L1 -826 6982 6578 471 230 14 20 chr9 130445154 130445302 -11826142 + MLT1H LTR MaLR 95 241 -308 273 201 31 0 chr9 130445461 130445534 -11825910 + MLT1I LTR MaLR 317 441 -9 21 0 0 0 chr9 130445609 130445630 -11825814 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr9 130445681 130445714 -11825730 + AT_rich Low_complexity Low_complexity 1 33 0 229 149 85 0 chr9 130445938 130445985 -11825459 + L2 LINE L2 3262 3312 -1 309 290 149 50 chr9 130446888 130447109 -11824335 + MIR SINE MIR 20 262 0 962 185 0 0 chr9 130448527 130448673 -11822771 - FRAM SINE Alu -30 146 1 231 348 152 0 chr9 130448673 130448811 -11822633 - L2 LINE L2 -564 2750 2592 405 213 0 0 chr9 130449092 130449167 -11822277 + FLAM_A SINE Alu 40 114 -28 345 24 0 0 chr9 130449168 130449210 -11822234 + (CAT)n Simple_repeat Simple_repeat 2 43 0 389 301 122 26 chr9 130450338 130450723 -11820721 + L2 LINE L2 2554 2975 -339 248 351 21 0 chr9 130450875 130450969 -11820475 + L2 LINE L2 3134 3229 -43 568 315 55 4 chr9 130451695 130451933 -11819511 + MIR SINE MIR 3 252 -10 267 214 71 127 chr9 130452024 130452150 -11819294 + L2 LINE L2 3193 3311 -2 447 247 129 18 chr9 130452177 130452347 -11819097 + MIR SINE MIR 4 192 -70 422 225 162 12 chr9 130452360 130452533 -11818911 - L1ME1 LINE L1 -6 6160 5962 * 1192 198 3 99 chr9 130452530 130452883 -11818561 - L1M4 LINE L1 -1408 4738 4420 3136 219 16 22 chr9 130452884 130453638 -11817806 - L1M4 LINE L1 -1903 4243 3495 562 75 0 0 chr9 130453700 130453767 -11817677 + L1PA4 LINE L1 32 98 -6048 * 40322 30 5 1 chr9 130453765 130459133 -11812311 + L1PA4 LINE L1 623 6009 -146 394 238 78 93 chr9 130459249 130459518 -11811926 - LTR37A LTR ERV1 -78 348 84 21 0 0 0 chr9 130459671 130459692 -11811752 + AT_rich Low_complexity Low_complexity 1 21 0 473 284 88 41 chr9 130460255 130460698 -11810746 - L1M4 LINE L1 -2873 3273 2810 314 288 43 68 chr9 130460698 130460861 -11810583 - L2 LINE L2 0 3272 3114 804 257 89 34 chr9 130461215 130461654 -11809790 - HAL1 LINE L1 -5 2502 2040 1744 97 0 0 chr9 130461757 130461984 -11809460 + AluSg/x SINE Alu 80 306 -6 183 370 59 0 chr9 130462182 130462317 -11809127 + L2 LINE L2 2514 2656 -658 215 308 60 8 chr9 130465218 130465335 -11806109 - MIR SINE MIR -109 153 31 397 256 0 0 chr9 130465647 130465729 -11805715 + MIR3 SINE MIR 90 171 -37 426 327 122 9 chr9 130465974 130466188 -11805256 - L2 LINE L2 -18 3254 3017 269 296 194 10 chr9 130466231 130466427 -11805017 - MIR SINE MIR -7 255 24 1615 179 21 7 chr9 130468958 130469243 -11802201 + AluJo SINE Alu 1 289 -23 408 67 0 0 chr9 130469243 130469303 -11802141 + (GA)n Simple_repeat Simple_repeat 1 60 0 1692 128 0 16 chr9 130470032 130470289 -11801155 - AluSx SINE Alu -59 253 1 310 317 91 16 chr9 130471639 130471825 -11799619 + L2 LINE L2 3073 3272 0 500 294 33 49 chr9 130472024 130472208 -11799236 + MIR SINE MIR 72 252 -10 1419 289 41 53 chr9 130472396 130472961 -11798483 + MLT1K LTR MaLR 16 573 -15 387 318 74 16 chr9 130473240 130473429 -11798015 - MIR SINE MIR -17 245 46 466 266 77 0 chr9 130473871 130474014 -11797430 - MIR SINE MIR -10 252 99 3066 232 16 24 chr9 130474169 130475015 -11796429 - L1M4 LINE L1 -1538 4608 3769 338 313 83 60 chr9 130475396 130475732 -11795712 - L3 LINE CR1 -179 1398 1055 683 158 124 79 chr9 130475747 130475919 -11795525 + L1MC/D LINE L1 5433 5596 -605 2123 118 0 0 chr9 130475919 130476199 -11795245 + AluSg SINE Alu 1 280 -30 186 43 0 0 chr9 130476207 130476230 -11795214 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 330 26 0 0 chr9 130476238 130476277 -11795167 + (CA)n Simple_repeat Simple_repeat 2 40 0 683 158 124 79 chr9 130476277 130476419 -11795025 + L1MC/D LINE L1 5608 5833 -368 242 203 38 13 chr9 130476693 130476772 -11794672 - L2 LINE L2 -1294 2020 1940 841 261 79 56 chr9 130477580 130478168 -11793276 + L2 LINE L2 2427 3025 -288 213 196 89 0 chr9 130478322 130478378 -11793066 - L2 LINE L2 -1 3271 3211 211 160 140 0 chr9 130478379 130478429 -11793015 + L2 LINE L2 3173 3229 -84 502 301 29 35 chr9 130479053 130479226 -11792218 + MIR SINE MIR 8 179 -83 418 281 205 5 chr9 130479866 130480051 -11791393 - HAL1 LINE L1 -586 1921 1700 189 253 35 58 chr9 130480430 130480517 -11790927 + L3 LINE CR1 950 1034 -543 1986 141 0 0 chr9 130480541 130480845 -11790599 + AluSx SINE Alu 1 304 -8 725 137 0 84 chr9 130481008 130481139 -11790305 - AluJb SINE Alu -25 287 168 2845 157 31 13 chr9 130482776 130483253 -11788191 - MER66B LTR ERV1 0 486 1 1886 141 31 17 chr9 130484200 130484490 -11786954 - MER1B DNA MER1_type 0 339 46 667 249 44 20 chr9 130484506 130484755 -11786689 - L1ME LINE L1 -375 5746 5492 1886 141 31 17 chr9 130485480 130485770 -11785674 - MER1B DNA MER1_type 0 339 46 684 252 46 42 chr9 130485786 130486123 -11785321 - L1MC/D LINE L1 -375 5746 5426 375 316 41 56 chr9 130486280 130486476 -11784968 - L1MC/D LINE L1 -2624 3522 3330 604 211 32 60 chr9 130486762 130486947 -11784497 + MER104 DNA MER2_type 1 180 0 243 267 0 33 chr9 130487053 130487143 -11784301 - L1MC/D LINE L1 -3104 3042 2956 2075 152 30 59 chr9 130487257 130487679 -11783765 - L1MB8 LINE L1 -1 6177 5769 1655 134 0 8 chr9 130487679 130487933 -11783511 - AluJo SINE Alu -20 292 41 2075 152 30 59 chr9 130487933 130488004 -11783440 - L1MB8 LINE L1 -409 5769 5698 5321 109 47 7 chr9 130488408 130488905 -11782539 - L1MA4A LINE L1 -6 6297 5751 336 24 0 0 chr9 130488905 130488946 -11782498 + (TG)n Simple_repeat Simple_repeat 2 42 0 5321 109 47 7 chr9 130488946 130489295 -11782149 - L1MA4A LINE L1 -552 5751 5417 2228 97 0 0 chr9 130489330 130489641 -11781803 - AluSq SINE Alu -2 311 1 395 297 251 0 chr9 130490098 130490293 -11781151 - MIR SINE MIR -17 245 2 497 316 115 52 chr9 130492154 130492709 -11778735 - L2 LINE L2 -82 3190 2615 189 225 56 42 chr9 130493021 130493092 -11778352 + L2 LINE L2 2571 2642 -672 373 260 130 42 chr9 130494332 130494524 -11776920 - MIR SINE MIR -42 220 12 1691 221 89 57 chr9 130494836 130495361 -11776083 + MLT1F LTR MaLR 1 542 0 358 304 48 80 chr9 130495782 130496032 -11775412 - HAL1b LINE L1 -7 1341 1100 535 345 59 22 chr9 130496140 130496208 -11775236 - L1ME LINE L1 -343 5778 5714 1313 155 78 0 chr9 130496208 130496427 -11775017 + MER46A DNA MER2_type 1 236 0 535 345 59 22 chr9 130496427 130496715 -11774729 - L1ME LINE L1 -407 5714 5409 586 275 126 16 chr9 130498048 130498286 -11773158 + MIR SINE MIR 3 262 0 1263 178 67 15 chr9 130499363 130499535 -11771909 - AluJb SINE Alu 0 305 111 207 69 0 0 chr9 130499535 130499564 -11771880 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 1263 178 67 15 chr9 130499564 130499682 -11771762 - AluJb SINE Alu -194 111 1 217 269 45 30 chr9 130501491 130501558 -11769886 + MIR SINE MIR 117 184 -78 477 283 98 45 chr9 130501704 130502250 -11769194 - L1MC/D LINE L1 -743 5403 5073 186 43 0 0 chr9 130503168 130503191 -11768253 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr9 130503225 130503247 -11768197 + AT_rich Low_complexity Low_complexity 1 22 0 2149 92 3 13 chr9 130503644 130503948 -11767496 - AluSc SINE Alu -8 301 1 593 240 23 0 chr9 130504715 130504844 -11766600 - MIR SINE MIR -116 146 15 322 351 40 23 chr9 130504958 130505132 -11766312 - MIR SINE MIR -70 192 16 254 297 69 69 chr9 130505683 130505858 -11765586 + MIR SINE MIR 28 202 -60 194 298 197 0 chr9 130506170 130506337 -11765107 + MIR SINE MIR 32 237 -25 331 267 43 43 chr9 130506365 130506481 -11764963 - L2 LINE L2 -1 3312 3197 238 277 89 50 chr9 130506876 130506977 -11764467 + MIR SINE MIR 90 194 -68 295 292 14 0 chr9 130507030 130507102 -11764342 - MIR SINE MIR -3 259 187 * 329 293 105 50 chr9 130507099 130507114 -11764330 - L2 LINE L2 0 3313 3300 5661 109 21 21 chr9 130507114 130508006 -11763438 + L1PA16 LINE L1 4791 5689 -477 1888 157 0 3 chr9 130508006 130508306 -11763138 + AluSx SINE Alu 1 299 -13 5661 109 21 21 chr9 130508306 130508782 -11762662 + L1PA16 LINE L1 5688 6163 -3 329 293 105 50 chr9 130508782 130508947 -11762497 - L2 LINE L2 -13 3300 3123 425 275 37 9 chr9 130508978 130509087 -11762357 - MIR SINE MIR -100 162 51 355 293 197 0 chr9 130509497 130509644 -11761800 + MIR SINE MIR 60 235 -27 230 204 93 0 chr9 130509790 130509844 -11761600 + MER113 DNA MER1_type? 21 79 -442 2770 169 58 5 chr9 130509845 130510401 -11761043 - L1MB5 LINE L1 0 6174 5590 660 269 32 74 chr9 130511473 130511785 -11759659 + L1ME LINE L1 5480 5778 -343 200 293 27 0 chr9 130512007 130512082 -11759362 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 250 256 12 58 chr9 130512503 130512589 -11758855 - L3 LINE CR1 -514 1063 982 31 76 0 0 chr9 130513000 130513066 -11758378 + AT_rich Low_complexity Low_complexity 1 66 0 252 86 0 0 chr9 130513197 130513232 -11758212 + (T)n Simple_repeat Simple_repeat 1 35 0 211 278 208 35 chr9 130516041 130516185 -11755259 - MIR SINE MIR -54 208 40 351 283 159 0 chr9 130516503 130516641 -11754803 + MIR3 SINE MIR 49 208 0 315 212 30 0 chr9 130516934 130517000 -11754444 - MIR SINE MIR -117 145 78 255 295 82 33 chr9 130517047 130517169 -11754275 + L2 LINE L2 3144 3271 -1 319 167 91 0 chr9 130517181 130517247 -11754197 - MLT1K LTR MaLR 0 588 517 195 215 15 77 chr9 130518006 130518071 -11753373 + MIR SINE MIR 17 77 -131 317 339 41 0 chr9 130518191 130518362 -11753082 - MIR SINE MIR -35 227 50 21 0 0 0 chr9 130520080 130520101 -11751343 + AT_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr9 130520140 130520168 -11751276 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 336 266 24 40 chr9 130520199 130520323 -11751121 + MIR SINE MIR 77 198 -64 259 86 52 69 chr9 130520492 130520550 -11750894 + L2 LINE L2 3214 3270 -2 335 358 35 52 chr9 130521618 130521847 -11749597 + MIR SINE MIR 20 244 -18 204 264 19 0 chr9 130521816 130521869 -11749575 + L2 LINE L2 3259 3312 -1 * 698 243 11 55 chr9 130524475 130524656 -11746788 + MIR SINE MIR 77 249 -13 522 305 56 15 chr9 130524832 130525029 -11746415 - MIR SINE MIR -9 253 49 717 265 91 14 chr9 130525330 130525549 -11745895 - MIR SINE MIR -6 256 21 2201 231 103 60 chr9 130526745 130526880 -11744564 + L1ME1 LINE L1 5178 5306 -860 3326 67 13 25 chr9 130526880 130527327 -11744117 + MLT2A1 LTR ERVL 3 444 0 2201 231 103 60 chr9 130527327 130527350 -11744094 + L1ME1 LINE L1 5306 5327 -839 1670 127 13 50 chr9 130527350 130527649 -11743795 + AluJo SINE Alu 18 305 -7 2201 231 103 60 chr9 130527649 130528416 -11743028 + L1ME1 LINE L1 5327 6161 -5 276 330 38 0 chr9 130528457 130528563 -11742881 + HAL1 LINE L1 1809 1918 -589 244 314 0 0 chr9 130528696 130528766 -11742678 + HAL1 LINE L1 2074 2143 -364 229 254 328 0 chr9 130528983 130529105 -11742339 + HAL1 LINE L1 2344 2505 -2 2450 86 0 3 chr9 130529281 130529583 -11741861 - AluSx SINE Alu -11 301 1 342 264 31 31 chr9 130529825 130529954 -11741490 + GA-rich Low_complexity Low_complexity 1 129 0 288 130 0 0 chr9 130530193 130530239 -11741205 + (ATG)n Simple_repeat Simple_repeat 1 46 0 897 274 110 29 chr9 130530370 130530859 -11740585 - L2 LINE L2 -63 3250 2727 213 121 0 0 chr9 130531691 130531724 -11739720 + (A)n Simple_repeat Simple_repeat 1 33 0 242 250 0 0 chr9 130531728 130531788 -11739656 - L1ME4a LINE L1 0 6121 6062 2199 102 17 3 chr9 130531824 130532117 -11739327 - AluSx SINE Alu -15 297 1 603 202 0 0 chr9 130532117 130532211 -11739233 - FLAM_A SINE Alu -29 113 20 862 263 8 57 chr9 130532307 130532569 -11738875 - MIR SINE MIR 0 262 14 379 284 99 54 chr9 130533261 130533483 -11737961 + L1M4 LINE L1 3820 4051 -2095 590 99 0 11 chr9 130533511 130533602 -11737842 + L1PA12 LINE L1 6078 6167 -1 405 154 44 110 chr9 130533603 130533710 -11737734 + L1ME1 LINE L1 5718 5817 -349 2327 85 0 0 chr9 130533710 130534021 -11737423 + AluY SINE Alu 1 311 0 405 154 44 110 chr9 130534021 130534048 -11737396 + L1ME1 LINE L1 5817 5844 -322 759 134 280 0 chr9 130534073 130534230 -11737214 - MER105 DNA DNA -1 203 3 1177 166 63 47 chr9 130534246 130534370 -11737074 - MER33 DNA MER1_type -2261 324 203 6910 120 52 42 chr9 130534370 130534655 -11736789 + Tigger3b DNA MER2_type 2 283 -2745 2016 118 25 0 chr9 130534655 130534981 -11736463 - AluSx SINE Alu 0 333 1 6910 120 52 42 chr9 130534981 130535100 -11736344 + Tigger3b DNA MER2_type 283 399 -2629 2128 83 18 4 chr9 130535100 130535402 -11736042 - AluSx SINE Alu 0 306 1 6910 120 52 42 chr9 130535402 130536212 -11735232 + Tigger3b DNA MER2_type 399 1231 0 1177 166 63 47 chr9 130536212 130536406 -11735038 - MER33 DNA MER1_type -2382 203 1 467 285 55 24 chr9 130536826 130536991 -11734453 + MIR3 SINE MIR 36 205 -3 248 223 39 10 chr9 130537301 130537404 -11734040 + GA-rich Low_complexity Low_complexity 4 109 0 701 303 48 24 chr9 130537896 130538147 -11733297 - MIR SINE MIR 0 262 6 481 316 32 11 chr9 130538267 130538454 -11732990 - MIR SINE MIR -6 256 66 256 245 224 10 chr9 130539265 130539363 -11732081 - L2 LINE L2 -20 3252 3134 331 376 119 41 chr9 130540093 130540505 -11730939 + L2 LINE L2 2829 3272 0 2275 82 3 3 chr9 130541859 130542152 -11729292 + AluSq SINE Alu 1 293 -20 265 343 69 0 chr9 130543640 130543742 -11727702 - MIR SINE MIR -141 121 13 620 282 97 5 chr9 130544479 130544695 -11726749 - MIR SINE MIR -12 250 15 942 307 83 67 chr9 130545082 130546040 -11725404 + L2 LINE L2 2291 3272 0 222 347 71 0 chr9 130546129 130546227 -11725217 - L2 LINE L2 -1 3271 3167 963 260 9 0 chr9 130546673 130546892 -11724552 + MIR SINE MIR 28 248 -14 1002 218 0 0 chr9 130547273 130547484 -11723960 - L1P LINE L1 -2034 4112 3902 399 285 85 83 chr9 130547629 130548149 -11723295 - Charlie4 DNA MER1_type -822 1139 619 2179 129 0 0 chr9 130549024 130549356 -11722088 + AluSq SINE Alu 14 345 0 612 223 8 143 chr9 130549544 130549632 -11721812 + L1ME3A LINE L1 5483 5581 -581 868 61 9 0 chr9 130549632 130549746 -11721698 + L1PA10 LINE L1 6053 6167 -1 612 223 8 143 chr9 130549746 130549908 -11721536 + L1ME3A LINE L1 5581 5699 -463 2858 23 0 0 chr9 130549910 130550351 -11721093 - L1PA2 LINE L1 -671 5484 5044 5915 18 0 0 chr9 130550351 130551011 -11720433 + L1PA2 LINE L1 5496 6155 0 1637 223 43 14 chr9 130551021 130551466 -11719978 + L1ME3A LINE L1 5691 6148 -22 780 235 24 78 chr9 130551469 130551548 -11719896 + L1MEc LINE L1 1841 1923 -4473 2434 89 7 0 chr9 130551548 130551852 -11719592 - AluSq SINE Alu -7 306 1 780 235 24 78 chr9 130551852 130552142 -11719302 + L1MEc LINE L1 1923 2190 -4206 1419 174 151 0 chr9 130552153 130552317 -11719127 - AluSx SINE Alu -14 298 160 468 0 0 0 chr9 130552317 130552369 -11719075 + (TTTTG)n Simple_repeat Simple_repeat 5 56 0 1419 174 151 0 chr9 130552369 130552463 -11718981 - AluSx SINE Alu -152 160 1 293 176 72 0 chr9 130552766 130552859 -11718585 - MIR SINE MIR -2 206 100 2153 103 0 17 chr9 130552930 130553221 -11718223 + AluSp SINE Alu 28 313 0 2259 215 59 8 chr9 130553231 130553895 -11717549 + L1MEc LINE L1 2883 3580 -2635 * 3964 151 18 6 chr9 130553885 130554572 -11716872 + L1MC1 LINE L1 5610 6304 -29 198 0 0 0 chr9 130554572 130554594 -11716850 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1464 24 6 0 chr9 130554594 130554763 -11716681 - L1PA4 LINE L1 -18 6137 5968 815 276 49 9 chr9 130555631 130555856 -11715588 - MIR SINE MIR -21 241 8 203 171 0 0 chr9 130555870 130555911 -11715533 + (ATG)n Simple_repeat Simple_repeat 3 43 0 749 232 83 34 chr9 130555915 130556141 -11715303 - MIR SINE MIR -17 245 14 280 286 0 60 chr9 130556136 130556220 -11715224 - L2 LINE L2 0 3272 3194 * 783 144 138 0 chr9 130556734 130556894 -11714550 + MER5A DNA MER1_type 8 189 0 235 297 102 0 chr9 130556979 130557097 -11714347 - MIR SINE MIR -77 185 56 452 336 29 33 chr9 130557098 130557342 -11714102 + MIR SINE MIR 17 259 -3 566 207 101 50 chr9 130557892 130558071 -11713373 + MIR SINE MIR 6 193 -69 675 308 23 18 chr9 130558413 130558634 -11712810 - MIR SINE MIR -6 256 35 462 327 62 10 chr9 130558659 130558867 -11712577 - LTR33 LTR ERVL -300 221 3 23 0 0 0 chr9 130559395 130559418 -11712026 + AT_rich Low_complexity Low_complexity 1 23 0 555 213 59 15 chr9 130560281 130560417 -11711027 - MER104 DNA Tc2 0 180 39 3053 74 67 0 chr9 130560456 130560875 -11710569 + L1PA7 LINE L1 5706 6152 -2 445 342 76 5 chr9 130560929 130561113 -11710331 + MIR SINE MIR 51 247 -15 242 232 16 104 chr9 130561352 130561477 -11709967 + L1ME LINE L1 3 116 -5954 1542 277 60 30 chr9 130561592 130562584 -11708860 + L1ME LINE L1 321 1444 -4817 491 266 136 10 chr9 130563195 130563400 -11708044 - MIR SINE MIR -35 227 1 437 166 65 72 chr9 130563524 130563663 -11707781 - MIR SINE MIR -14 248 111 201 379 63 29 chr9 130563925 130564099 -11707345 + L2 LINE L2 2665 2844 -470 1117 236 128 81 chr9 130564132 130564700 -11706744 - MLT1G1 LTR MaLR 0 595 1 354 271 65 51 chr9 130565276 130565490 -11705954 - MIR SINE MIR -39 223 7 469 238 30 0 chr9 130567409 130567510 -11703934 + MIR SINE MIR 48 151 -111 760 248 191 5 chr9 130567537 130567747 -11703697 - MIR SINE MIR 0 262 14 2410 69 3 20 chr9 130567907 130568212 -11703232 - AluY SINE Alu -11 300 1 753 215 52 21 chr9 130569108 130569299 -11702145 - MIR SINE MIR -41 221 25 240 338 33 25 chr9 130570098 130570277 -11701167 - MIR SINE MIR -24 184 5 924 92 0 0 chr9 130570578 130570697 -11700747 + AluSc SINE Alu 178 296 -13 316 253 152 0 chr9 130570948 130571047 -11700397 + L2 LINE L2 3200 3313 0 352 310 69 58 chr9 130571144 130571318 -11700126 + L2 LINE L2 3055 3230 -42 286 338 40 34 chr9 130571543 130571691 -11699753 - L2 LINE L2 -221 3051 2903 272 339 9 17 chr9 130571689 130571804 -11699640 - L2 LINE L2 -575 2739 2626 * 495 264 61 37 chr9 130571808 130571971 -11699473 + MIR SINE MIR 14 180 -82 220 219 16 16 chr9 130572638 130572702 -11698742 + (TGGA)n Simple_repeat Simple_repeat 4 67 0 220 388 37 27 chr9 130572862 130573050 -11698394 - L3b LINE CR1 -87 1496 1307 362 303 46 0 chr9 130573163 130573272 -11698172 + MIR SINE MIR 57 170 -92 330 196 90 128 chr9 130573278 130573357 -11698087 + MER94 DNA DNA 7 82 -52 1453 125 0 0 chr9 130573357 130573573 -11697871 + AluSq SINE Alu 94 309 0 330 196 90 128 chr9 130573573 130573625 -11697819 + MER94 DNA DNA 82 134 0 299 259 34 36 chr9 130574361 130574462 -11696982 + MIR SINE MIR 50 149 -68 404 250 9 28 chr9 130574505 130574613 -11696831 - MER91B DNA MER1_type -83 107 2 275 250 16 0 chr9 130574615 130574679 -11696765 + MIR SINE MIR 148 212 -50 392 340 99 31 chr9 130575436 130575627 -11695817 + MIR SINE MIR 20 223 -39 348 295 27 40 chr9 130575740 130575889 -11695555 + MIR SINE MIR 70 216 -46 763 300 12 36 chr9 130576892 130577142 -11694302 + MIR SINE MIR 17 260 -2 3489 265 133 17 chr9 130577275 130578823 -11692621 - L2 LINE L2 -2 3311 1557 624 363 78 10 chr9 130578816 130579111 -11692333 + L2 LINE L2 2958 3272 0 * 272 259 241 18 chr9 130579367 130579479 -11691965 - L2 LINE L2 0 3272 3136 223 292 0 28 chr9 130581172 130581244 -11690200 + L2 LINE L2 3201 3270 -2 594 296 70 24 chr9 130582104 130582317 -11689127 + MIR SINE MIR 16 238 -24 213 354 101 0 chr9 130582323 130582402 -11689042 + MIR3 SINE MIR 109 195 -13 505 282 25 13 chr9 130582643 130582833 -11688611 + MIR SINE MIR 13 205 -57 288 258 125 17 chr9 130582840 130582960 -11688484 - L2 LINE L2 -2 3270 3138 387 247 0 0 chr9 130584747 130584832 -11686612 - MIR SINE MIR -133 129 45 182 118 59 0 chr9 130586402 130586436 -11685008 - L2 LINE L2 -210 3062 3027 383 400 109 3 chr9 130586462 130586812 -11684632 + L3 LINE CR1 97 483 -1094 232 311 27 0 chr9 130587568 130587642 -11683802 + ORSL DNA AcHobo 197 272 -3 359 315 69 8 chr9 130589586 130589716 -11681728 - MIR3 SINE MIR -60 148 11 213 276 207 0 chr9 130590601 130590688 -11680756 + MIR SINE MIR 158 262 0 2216 104 0 19 chr9 130592088 130592395 -11679049 - AluSg SINE Alu -9 301 1 228 301 60 54 chr9 130593248 130593414 -11678030 - MIR SINE MIR -76 186 20 443 315 105 0 chr9 130594389 130594589 -11676855 - MIR SINE MIR -14 248 28 553 273 98 19 chr9 130594775 130594980 -11676464 + MIR SINE MIR 41 261 -1 206 95 95 0 chr9 130595360 130595402 -11676042 + L2 LINE L2 3265 3310 -3 547 327 59 0 chr9 130596199 130596419 -11675025 + MIR SINE MIR 24 256 -6 651 311 15 0 chr9 130598015 130598211 -11673233 - MIR SINE MIR -18 244 46 200 243 14 29 chr9 130598910 130598980 -11672464 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 497 310 51 10 chr9 130600989 130601186 -11670258 - MIR SINE MIR -6 256 52 352 293 79 0 chr9 130601260 130601371 -11670073 + MIR SINE MIR 5 124 -84 219 318 104 17 chr9 130601538 130601711 -11669733 + L2 LINE L2 3113 3300 -13 298 267 40 20 chr9 130603377 130603478 -11667966 - L2 LINE L2 -1 3271 3169 279 342 80 5 chr9 130603668 130603867 -11667577 - L2 LINE L2 -465 2849 2636 698 280 110 33 chr9 130604224 130605214 -11666230 - L1ME4a LINE L1 -232 5889 4815 274 315 0 0 chr9 130605364 130605475 -11665969 - L1ME4a LINE L1 -1558 4588 4478 654 279 115 45 chr9 130605636 130606071 -11665373 - L1ME4a LINE L1 -1623 4523 4047 266 308 115 37 chr9 130606147 130606390 -11665054 - L1ME4a LINE L1 -2382 3764 3541 417 99 127 0 chr9 130606390 130606461 -11664983 - MADE1 DNA Mariner 0 80 1 266 308 115 37 chr9 130606461 130607052 -11664392 - L1ME4a LINE L1 -2605 3541 2865 236 308 39 62 chr9 130607072 130607202 -11664242 - MLT1K LTR MaLR -454 134 8 252 270 40 0 chr9 130607220 130607294 -11664150 + MIR SINE MIR 171 247 -15 520 276 55 12 chr9 130608906 130609069 -11662375 + MIR SINE MIR 31 200 -62 438 260 49 8 chr9 130609518 130609641 -11661803 - MIR SINE MIR -61 147 20 402 338 60 23 chr9 130609957 130610173 -11661271 + MIR SINE MIR 33 256 -6 206 315 110 0 chr9 130610197 130610270 -11661174 + MIR SINE MIR 115 195 -67 278 281 115 29 chr9 130610285 130610424 -11661020 - L2 LINE L2 0 3272 3122 371 263 70 9 chr9 130611020 130611134 -11660310 + MIR SINE MIR 13 133 -129 499 301 153 0 chr9 130611764 130611947 -11659497 + MIR SINE MIR 12 222 -40 270 320 7 20 chr9 130612017 130612170 -11659274 - L1 LINE L1 -3106 3040 2890 2003 153 3 0 chr9 130612388 130612688 -11658756 - AluSx SINE Alu -11 301 1 2181 148 0 0 chr9 130612688 130612993 -11658451 - AluJb SINE Alu -7 305 1 324 200 29 29 chr9 130613027 130613097 -11658347 + L1MCa LINE L1 1983 2052 -4374 418 300 42 0 chr9 130614514 130614634 -11656810 - MIR SINE MIR -74 188 64 600 277 80 5 chr9 130614679 130614867 -11656577 - MLT1J2 LTR MaLR -119 331 130 276 279 38 0 chr9 130614867 130614946 -11656498 - MLT1J1 LTR MaLR -364 82 1 326 322 98 52 chr9 130614948 130615367 -11656077 - L2 LINE L2 -2498 816 379 220 262 151 49 chr9 130615553 130615738 -11655706 + MIR SINE MIR 10 252 -10 231 294 47 12 chr9 130615793 130615878 -11655566 - MIR SINE MIR -111 151 64 275 329 128 6 chr9 130616116 130616280 -11655164 + MIR SINE MIR 47 230 -32 259 277 121 58 chr9 130617371 130617577 -11653867 - L1MEd LINE L1 -5766 353 135 581 265 109 32 chr9 130617657 130617789 -11653655 - L3 LINE CR1 -627 950 830 2335 123 22 3 chr9 130617789 130618148 -11653296 + MER47A DNA MER2_type 1 366 0 581 265 109 32 chr9 130618148 130618328 -11653116 - L3 LINE CR1 -747 830 614 297 220 314 17 chr9 130618413 130618531 -11652913 - MER5B DNA MER1_type -1 177 25 2225 239 83 62 chr9 130619308 130619621 -11651823 - HAL1b LINE L1 -71 1277 972 2192 100 10 32 chr9 130619621 130619932 -11651512 + AluSx SINE Alu 1 304 -8 2225 239 83 62 chr9 130619932 130620616 -11650828 - HAL1b LINE L1 -376 972 259 2187 115 0 0 chr9 130621884 130622172 -11649272 + AluSx SINE Alu 1 288 -24 1283 99 222 19 chr9 130622173 130622385 -11649059 + AluSc SINE Alu 41 295 -14 478 153 10 10 chr9 130622388 130622486 -11648958 + GA-rich Low_complexity Low_complexity 4 101 0 456 250 0 47 chr9 130622486 130622614 -11648830 + MIR SINE MIR 21 142 -120 323 325 108 24 chr9 130623403 130623569 -11647875 + MIR SINE MIR 32 211 -51 239 289 32 122 chr9 130623792 130623948 -11647496 + MIR SINE MIR 84 225 -37 258 156 0 0 chr9 130625327 130625372 -11646072 + (TGGG)n Simple_repeat Simple_repeat 3 47 0 284 140 0 18 chr9 130625696 130625753 -11645691 + (CCCCAG)n Simple_repeat Simple_repeat 2 57 0 458 260 67 24 chr9 130626317 130626525 -11644919 - LTR33 LTR ERVL -304 217 1 241 177 32 32 chr9 130626532 130626594 -11644850 + MIR SINE MIR 117 178 -84 192 260 20 0 chr9 130626697 130626747 -11644697 + L2 LINE L2 3000 3050 -222 601 243 7 7 chr9 130626830 130626970 -11644474 + MER58B DNA MER1_type 182 321 -20 185 250 23 0 chr9 130627070 130627114 -11644330 + L2 LINE L2 3133 3177 -95 350 295 66 48 chr9 130628560 130628726 -11642718 + MIR SINE MIR 4 172 -90 1180 234 50 32 chr9 130628883 130629366 -11642078 - MLT1G LTR MaLR -13 577 11 400 303 119 5 chr9 130629446 130629631 -11641813 - MIR SINE MIR -18 244 39 823 157 0 43 chr9 130630220 130630360 -11641084 + FLAM_C SINE Alu 1 134 -9 789 117 14 41 chr9 130630392 130630465 -11640979 + MSTB1 LTR MaLR 292 365 -67 842 102 0 7 chr9 130630465 130630602 -11640842 + (TTCC)n Simple_repeat Simple_repeat 3 138 0 2263 96 10 0 chr9 130630602 130630894 -11640550 - AluSx SINE Alu -17 295 1 789 117 14 41 chr9 130630894 130630964 -11640480 + MSTB1 LTR MaLR 363 432 0 2256 115 74 38 chr9 130630994 130631400 -11640044 - MSTB LTR MaLR 0 426 1 1827 142 20 0 chr9 130632211 130632507 -11638937 + AluJb SINE Alu 3 304 -8 283 279 61 20 chr9 130632865 130633012 -11638432 - MIR3 SINE MIR -53 155 3 589 318 26 5 chr9 130633602 130633797 -11637647 + MIR SINE MIR 63 261 -1 406 351 29 11 chr9 130634042 130634216 -11637228 - MIR SINE MIR -75 187 11 228 264 182 8 chr9 130635257 130635378 -11636066 + MIR SINE MIR 115 256 -6 242 169 31 31 chr9 130635601 130635666 -11635778 + MIR SINE MIR 111 175 -87 387 310 35 29 chr9 130636043 130636217 -11635227 + MER5B DNA MER1_type 1 175 -3 1890 79 0 8 chr9 130636222 130636475 -11634969 - AluSg SINE Alu -7 303 53 276 226 102 66 chr9 130636782 130636849 -11634595 - LTR67 LTR ERVL -7 550 487 1456 133 8 158 chr9 130636849 130637211 -11634233 + AluSp SINE Alu 1 308 -5 276 226 102 66 chr9 130637211 130637280 -11634164 - LTR67 LTR ERVL -70 487 409 227 320 40 0 chr9 130637695 130637770 -11633674 + MIR SINE MIR 113 190 -72 402 239 81 81 chr9 130637781 130637990 -11633454 - LTR33 LTR ERVL -9 512 304 * 466 255 35 21 chr9 130637962 130638107 -11633337 - LTR33 LTR ERVL -374 147 1 1155 162 20 5 chr9 130638503 130638723 -11632721 - AluJb SINE Alu 0 308 86 714 324 68 22 chr9 130638731 130639528 -11631916 - L1ME2 LINE L1 -299 5865 5031 394 320 132 4 chr9 130639566 130639847 -11631597 - L1ME2 LINE L1 -1177 4969 4653 2536 55 0 0 chr9 130639874 130640181 -11631263 - AluY SINE Alu -4 307 1 224 352 37 0 chr9 130640244 130640352 -11631092 - L2 LINE L2 -568 2746 2635 840 177 0 46 chr9 130640688 130640863 -11630581 + AluJb SINE Alu 137 303 -9 262 323 79 31 chr9 130640905 130641159 -11630285 - L2 LINE L2 -1152 2162 1897 415 301 98 17 chr9 130642342 130642515 -11628929 - MIR SINE MIR -56 206 20 2286 82 0 0 chr9 130642607 130642898 -11628546 - AluSx SINE Alu -21 291 1 218 323 0 0 chr9 130642899 130642961 -11628483 + MIR SINE MIR 42 103 -105 446 170 0 10 chr9 130643938 130644038 -11627406 + CT-rich Low_complexity Low_complexity 4 102 0 316 335 80 11 chr9 130644135 130644323 -11627121 - MIR SINE MIR -29 233 33 367 277 32 39 chr9 130644392 130644547 -11626897 - MIR SINE MIR -70 192 39 266 203 0 14 chr9 130648105 130648179 -11623265 + (CA)n Simple_repeat Simple_repeat 1 73 0 318 406 0 0 chr9 130648211 130648376 -11623068 + (CA)n Simple_repeat Simple_repeat 1 165 0 463 308 41 27 chr9 130648513 130648741 -11622703 - MIR SINE MIR -32 230 1 225 186 0 0 chr9 130649112 130649155 -11622289 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 227 297 102 78 chr9 130649155 130649283 -11622161 - L2 LINE L2 0 3313 3183 1040 155 8 32 chr9 130652377 130652626 -11618818 - AluJo SINE Alu -16 296 1 3094 63 0 11 chr9 130654478 130654857 -11616587 - THE1C LTR MaLR 0 375 1 636 242 30 6 chr9 130655120 130655285 -11616159 + MIR SINE MIR 61 229 -33 199 260 41 0 chr9 130655293 130655416 -11616028 + (CAT)n Simple_repeat Simple_repeat 3 130 0 207 0 0 0 chr9 130655706 130655729 -11615715 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 286 251 26 0 chr9 130656198 130656275 -11615169 + MIR3 SINE MIR 93 155 -53 345 278 113 8 chr9 130656636 130656769 -11614675 + MIR SINE MIR 14 160 -102 437 303 196 30 chr9 130659004 130659377 -11612067 - L2 LINE L2 -1 3271 2837 455 294 28 56 chr9 130661933 130662113 -11609331 - MER5A DNA MER1_type -6 183 9 1413 212 156 7 chr9 130662356 130662780 -11608664 + Charlie4a DNA MER1_type 18 504 -4 588 316 16 5 chr9 130663624 130663811 -11607633 - MIR SINE MIR -39 223 35 233 283 242 32 chr9 130664326 130664545 -11606899 + L3 LINE CR1 581 845 -732 386 257 29 52 chr9 130664550 130664686 -11606758 + L1MC/D LINE L1 5603 5735 -2073 192 312 153 55 chr9 130664893 130665095 -11606349 + L3 LINE CR1 904 1125 -452 317 307 6 26 chr9 130665483 130665637 -11605807 + L1MC/D LINE L1 5681 5829 -321 412 285 154 24 chr9 130665981 130666234 -11605210 - L1ME3A LINE L1 -232 5938 5653 519 300 176 0 chr9 130666598 130666808 -11604636 + MIR SINE MIR 16 262 0 185 156 0 22 chr9 130667447 130667492 -11603952 + (TG)n Simple_repeat Simple_repeat 1 44 0 258 0 0 67 chr9 130673110 130673155 -11598289 + (CGGGG)n Simple_repeat Simple_repeat 5 46 0 304 213 14 64 chr9 130673334 130673475 -11597969 + (CGGGG)n Simple_repeat Simple_repeat 1 134 0 24 32 0 0 chr9 130673525 130673556 -11597888 + GC_rich Low_complexity Low_complexity 1 31 0 229 362 69 17 chr9 130674533 130674649 -11596795 + L2 LINE L2 2766 2887 -427 263 304 70 0 chr9 130674654 130674769 -11596675 + L2 LINE L2 3150 3272 0 212 208 0 21 chr9 130675024 130675072 -11596372 - L2 LINE L2 -77 3236 3190 958 205 67 5 chr9 130675171 130675366 -11596078 + MER3 DNA MER1_type 1 207 -2 2281 110 0 0 chr9 130675563 130675871 -11595573 + AluSx SINE Alu 1 308 -4 1728 170 7 10 chr9 130675881 130676181 -11595263 + AluJo SINE Alu 1 299 -13 848 284 103 32 chr9 130676306 130676907 -11594537 - L1ME4a LINE L1 -213 5908 5265 2160 104 7 7 chr9 130677059 130677368 -11594076 - AluSx SINE Alu -3 309 1 312 313 7 41 chr9 130677490 130677637 -11593807 - MER5B DNA MER1_type -7 171 30 1751 169 3 3 chr9 130677732 130678039 -11593405 - AluJo SINE Alu -4 308 2 745 254 96 5 chr9 130678370 130678590 -11592854 + MIR SINE MIR 11 250 -12 2175 84 24 0 chr9 130678622 130678919 -11592525 + AluSp SINE Alu 1 304 -9 378 315 0 0 chr9 130679211 130679300 -11592144 - L1MC4 LINE L1 -1340 6702 6614 308 281 10 31 chr9 130679219 130679302 -11592142 + L1MCa LINE L1 1996 2078 -4348 * 2274 57 0 63 chr9 130679302 130679620 -11591824 - AluY SINE Alu -13 298 1 308 281 10 31 chr9 130679620 130679632 -11591812 + L1MCa LINE L1 2078 2089 -4337 195 343 0 0 chr9 130679829 130679890 -11591554 - L3 LINE CR1 -3 1574 1514 679 194 15 0 chr9 130679890 130679906 -11591538 + MER5A DNA MER1_type 1 18 -171 261 321 36 43 chr9 130679906 130680046 -11591398 - MER5A DNA MER1_type -2 187 49 * 644 239 51 23 chr9 130680039 130680215 -11591229 - MER5A DNA MER1_type -5 184 4 357 391 45 5 chr9 130680215 130680414 -11591030 - L3 LINE CR1 -54 1523 1317 1834 167 3 3 chr9 130680557 130680857 -11590587 - AluJo SINE Alu -12 300 1 298 301 92 13 chr9 130680944 130681176 -11590268 - MLT1K LTR MaLR -57 531 264 330 224 294 0 chr9 130681184 130681269 -11590175 + AluJb SINE Alu 141 250 -52 1051 204 9 23 chr9 130681269 130681485 -11589959 + AluJo SINE Alu 85 297 -15 513 232 16 16 chr9 130681485 130681610 -11589834 - MLT1K LTR MaLR -314 274 150 190 288 30 0 chr9 130682774 130682840 -11588604 + L3 LINE CR1 905 972 -605 1858 196 60 9 chr9 130682877 130683224 -11588220 - MLT1A1 LTR MaLR 0 365 1 786 155 51 0 chr9 130683407 130683561 -11587883 - MER33 DNA MER1_type -260 64 1 881 228 28 9 chr9 130683912 130684123 -11587321 - L2 LINE L2 -1317 1997 1783 320 372 40 18 chr9 130684262 130684488 -11586956 + L3 LINE CR1 1204 1434 -143 1029 150 167 57 chr9 130684735 130684962 -11586482 - AluJo SINE Alu -54 258 7 273 275 33 42 chr9 130685231 130685351 -11586093 - LTR67 LTR ERVL -2 555 437 341 278 86 70 chr9 130685548 130685735 -11585709 - LTR67 LTR ERVL -269 288 99 1189 83 0 19 chr9 130686339 130686496 -11584948 - AluSg SINE Alu -121 189 36 430 251 86 53 chr9 130688683 130688785 -11582659 + LTR16A1 LTR ERVL 160 257 -200 921 188 137 31 chr9 130688785 130688876 -11582568 - MER33 DNA MER1_type -2261 324 244 1648 173 0 25 chr9 130688876 130689160 -11582284 + AluJo SINE Alu 13 289 -23 921 188 137 31 chr9 130689160 130689361 -11582083 - MER33 DNA MER1_type -2341 244 1 430 251 86 53 chr9 130689361 130689501 -11581943 + LTR16A1 LTR ERVL 257 410 -47 207 0 0 0 chr9 130689995 130690018 -11581426 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1083 140 13 0 chr9 130690020 130690177 -11581267 - AluSg/x SINE Alu -17 295 137 342 0 0 0 chr9 130690182 130690220 -11581224 + (TTG)n Simple_repeat Simple_repeat 2 39 0 318 307 102 17 chr9 130691655 130691831 -11579613 - L2 LINE L2 0 3313 3123 270 194 139 0 chr9 130691841 130691913 -11579531 - L2 LINE L2 -5 3267 3186 202 258 45 0 chr9 130692012 130692078 -11579366 + L2 LINE L2 3189 3257 -56 385 274 0 0 chr9 130692306 130692390 -11579054 - MER5B DNA MER1_type -25 153 70 321 339 109 40 chr9 130692326 130692648 -11578796 - L2 LINE L2 -9 3263 2920 * 526 269 64 23 chr9 130692671 130692842 -11578602 - MER5B DNA MER1_type 0 178 1 658 266 110 5 chr9 130693916 130694134 -11577310 - MIR SINE MIR -6 256 16 2049 130 0 3 chr9 130694771 130695064 -11576380 + AluSx SINE Alu 1 292 -20 213 39 0 0 chr9 130695176 130695202 -11576242 + (T)n Simple_repeat Simple_repeat 1 26 0 668 219 31 41 chr9 130695517 130695713 -11575731 - MLT1K LTR MaLR 0 588 395 2618 123 17 10 chr9 130695884 130696290 -11575154 - L1MA2 LINE L1 0 6304 5896 2074 140 0 10 chr9 130696846 130697160 -11574284 - AluJb SINE Alu -1 311 1 648 241 186 49 chr9 130697503 130697552 -11573892 + L1MC4a LINE L1 5638 5679 -2129 1934 147 0 7 chr9 130697552 130697864 -11573580 + AluJb SINE Alu 1 310 0 648 241 186 49 chr9 130697864 130697978 -11573466 + L1MC4a LINE L1 5679 5776 -2032 2247 95 7 3 chr9 130697978 130698273 -11573171 + AluSq SINE Alu 3 298 -15 648 241 186 49 chr9 130698273 130698575 -11572869 + L1MC4a LINE L1 5776 6169 -1639 324 302 118 40 chr9 130698627 130698975 -11572469 - L2 LINE L2 -792 2522 2148 1476 228 46 61 chr9 130699983 130700528 -11570916 + MER34 LTR ERV1 1 537 -5 304 284 5 144 chr9 130700650 130700858 -11570586 - MIR SINE MIR -14 248 70 369 190 38 0 chr9 130700985 130701064 -11570380 - L1ME2 LINE L1 0 6164 6083 313 259 37 83 chr9 130701521 130701629 -11569815 + L3 LINE CR1 1214 1316 -261 251 325 103 8 chr9 130701658 130701775 -11569669 - L2 LINE L2 -5 3308 3181 399 305 99 22 chr9 130701996 130702219 -11569225 + L3 LINE CR1 1310 1549 -28 300 296 19 22 chr9 130702360 130702468 -11568976 - MER5B DNA MER1_type -22 167 60 1442 281 51 48 chr9 130702490 130702752 -11568692 + L1ME3A LINE L1 5017 5277 -893 2358 85 0 0 chr9 130702752 130703034 -11568410 + AluSx SINE Alu 16 297 -15 1442 281 51 48 chr9 130703034 130703685 -11567759 + L1ME3A LINE L1 5277 5948 -222 227 184 0 0 chr9 130703905 130703943 -11567501 + MER5A DNA MER1_type 149 186 -3 376 228 211 0 chr9 130703954 130704068 -11567376 - MER5A DNA MER1_type 0 189 52 516 254 115 0 chr9 130704766 130704888 -11566556 + L2 LINE L2 3136 3271 -1 3285 175 35 70 chr9 130704911 130705713 -11565731 - L1MD1 LINE L1 -1 6241 5468 299 333 0 20 chr9 130706060 130706162 -11565282 - L2 LINE L2 0 3313 3214 516 244 216 6 chr9 130706170 130706346 -11565098 - MIR SINE MIR -3 259 47 2008 159 3 0 chr9 130706608 130706910 -11564534 + AluJo SINE Alu 1 303 -9 28 0 0 0 chr9 130707905 130707933 -11563511 + AT_rich Low_complexity Low_complexity 1 28 0 1362 133 76 61 chr9 130708005 130708268 -11563176 + AluJo SINE Alu 1 267 -45 273 353 26 0 chr9 130708268 130708384 -11563060 - MIR SINE MIR -41 221 103 239 317 163 16 chr9 130708547 130708670 -11562774 + MER5A DNA MER1_type 8 148 -41 1262 181 42 5 chr9 130708789 130709005 -11562439 - MER58A DNA MER1_type 0 224 1 699 264 89 34 chr9 130709093 130709224 -11562220 - MLT1J2 LTR MaLR 0 450 328 2447 82 0 0 chr9 130709224 130709518 -11561926 + AluSq SINE Alu 1 294 -19 699 264 89 34 chr9 130709518 130709621 -11561823 - MLT1J2 LTR MaLR -122 328 203 605 209 52 26 chr9 130709737 130709890 -11561554 - MLT1J2 LTR MaLR -290 160 4 329 258 0 0 chr9 130710037 130710103 -11561341 - L2 LINE L2 -1 3271 3206 249 328 23 62 chr9 130713180 130713308 -11558136 - L2 LINE L2 -14 3258 3136 318 261 90 36 chr9 130713686 130713797 -11557647 + MIR SINE MIR 8 125 -83 582 267 89 0 chr9 130713801 130713974 -11557470 + MIR SINE MIR 33 218 -44 1055 213 11 5 chr9 130714199 130714387 -11557057 - MER5A DNA MER1_type 0 189 1 22 35 0 0 chr9 130714529 130714558 -11556886 + AT_rich Low_complexity Low_complexity 1 29 0 262 289 157 20 chr9 130714558 130714852 -11556592 - L1ME4a LINE L1 -80 6041 5708 387 280 25 8 chr9 130715337 130715455 -11555989 - L2 LINE L2 -3 3310 3191 192 274 39 0 chr9 130715756 130715807 -11555637 + L2 LINE L2 2648 2700 -614 4898 152 16 68 chr9 130715820 130716269 -11555175 - L1MB4 LINE L1 0 6180 5709 1957 158 0 3 chr9 130716269 130716573 -11554871 - AluJo SINE Alu -8 304 2 4898 152 16 68 chr9 130716573 130717572 -11553872 - L1MB4 LINE L1 -471 5709 4781 425 321 195 16 chr9 130717574 130718096 -11553348 + L2 LINE L2 2687 3301 -12 396 327 80 0 chr9 130718541 130718654 -11552790 + L2 LINE L2 3151 3272 0 1774 77 32 28 chr9 130719766 130720014 -11551430 - AluSc SINE Alu -21 288 40 188 86 29 0 chr9 130720250 130720285 -11551159 + (TTA)n Simple_repeat Simple_repeat 1 36 0 620 243 8 95 chr9 130720290 130720553 -11550891 - MIR SINE MIR -10 252 13 384 264 0 0 chr9 130723313 130723404 -11548040 + L2 LINE L2 1852 1942 -1372 660 155 0 29 chr9 130723443 130723546 -11547898 - FLAM_C SINE Alu -22 121 22 582 303 156 37 chr9 130723563 130724051 -11547393 + L2 LINE L2 1979 2524 -790 761 219 96 5 chr9 130724113 130724296 -11547148 - MIR SINE MIR -33 229 30 319 254 212 17 chr9 130724353 130724471 -11546973 - MER5A DNA MER1_type 0 189 49 217 338 94 80 chr9 130724966 130725265 -11546179 + L2 LINE L2 2930 3232 -40 434 197 94 8 chr9 130725396 130725513 -11545931 - L1ME4a LINE L1 -3 6118 5992 1796 202 50 44 chr9 130725911 130726367 -11545077 - MLT1C LTR MaLR -1 466 8 247 305 9 38 chr9 130728036 130728141 -11543303 - L2 LINE L2 -1849 1465 1364 264 274 69 127 chr9 130729272 130729517 -11541927 + L2 LINE L2 3042 3272 0 995 256 12 21 chr9 130729631 130729873 -11541571 - MIR SINE MIR -10 252 13 944 117 107 61 chr9 130730517 130730665 -11540779 + MER3 DNA MER1_type 3 164 -45 2103 141 3 0 chr9 130730665 130730964 -11540480 + AluJb SINE Alu 1 300 -12 944 117 107 61 chr9 130730964 130731012 -11540432 + MER3 DNA MER1_type 164 208 -1 397 291 49 18 chr9 130731750 130732035 -11539409 - L1MEd LINE L1 -2983 3146 2853 887 185 0 0 chr9 130732123 130732269 -11539175 - FAM SINE Alu -22 163 18 1933 96 61 0 chr9 130732432 130732693 -11538751 + AluSp SINE Alu 1 277 -36 494 344 96 23 chr9 130732749 130733177 -11538267 - L1MEd LINE L1 -3456 2673 2215 274 291 176 45 chr9 130734165 130734454 -11536990 - MLT1J1 LTR MaLR -71 375 49 263 281 71 99 chr9 130735276 130735668 -11535776 - L2 LINE L2 -16 3256 2876 284 286 14 68 chr9 130735692 130735839 -11535605 - L2 LINE L2 -619 2695 2557 396 269 10 10 chr9 130736211 130736315 -11535129 - MER117 DNA MER1_type -49 148 45 2034 230 83 32 chr9 130736497 130737059 -11534385 - MER77 LTR ERV1 -4 601 53 815 233 32 41 chr9 130737235 130737454 -11533990 + MIR SINE MIR 12 228 -34 198 0 0 0 chr9 130739000 130739022 -11532422 + (T)n Simple_repeat Simple_repeat 1 22 0 483 273 106 12 chr9 130739149 130739310 -11532134 + MIR SINE MIR 86 261 -1 338 292 31 10 chr9 130740089 130740185 -11531259 + MIR SINE MIR 15 112 -150 1060 231 0 11 chr9 130740554 130740818 -11530626 - L1M4 LINE L1 -817 5329 5069 430 314 93 70 chr9 130740821 130741595 -11529849 - L1MEd LINE L1 -5214 905 107 2156 101 4 0 chr9 130741595 130741873 -11529571 - AluSg SINE Alu -31 279 1 430 314 93 70 chr9 130741873 130741980 -11529464 - L1MEd LINE L1 -6012 107 4 305 296 126 40 chr9 130742015 130742262 -11529182 - L2 LINE L2 -3 3310 3043 308 186 71 29 chr9 130742510 130742580 -11528864 - MER5C DNA MER1_type -240 84 12 362 285 32 49 chr9 130742584 130742707 -11528737 - L3 LINE CR1 -33 1544 1424 1027 220 55 77 chr9 130742709 130743033 -11528411 - MER21B LTR ERV1 -77 786 470 3595 117 14 4 chr9 130743033 130743529 -11527915 - MER1A DNA MER1_type 0 529 29 1572 264 32 44 chr9 130743538 130743736 -11527708 - MER21B LTR ERV1 -396 467 268 2436 95 3 0 chr9 130743736 130744042 -11527402 - AluSq SINE Alu -6 307 1 1572 264 32 44 chr9 130744042 130744316 -11527128 - MER21B LTR ERV1 -595 268 1 187 308 51 13 chr9 130744318 130744396 -11527048 - L3 LINE CR1 -152 1425 1345 1852 159 0 13 chr9 130744402 130744710 -11526734 - AluJb SINE Alu -8 304 1 180 111 0 0 chr9 130744714 130744741 -11526703 + (T)n Simple_repeat Simple_repeat 1 27 0 2352 102 0 13 chr9 130745436 130745750 -11525694 - AluSq SINE Alu -3 310 1 522 278 56 34 chr9 130745762 130746028 -11525416 - L1ME4a LINE L1 -286 5835 5564 2241 84 30 3 chr9 130746306 130746603 -11524841 + AluY SINE Alu 1 305 -6 1699 97 48 44 chr9 130746713 130746821 -11524623 - AluSq SINE Alu -64 249 143 2377 78 16 0 chr9 130746821 130747127 -11524317 - AluY SINE Alu 0 311 1 1699 97 48 44 chr9 130747127 130747266 -11524178 - AluSq SINE Alu -170 143 1 2167 87 63 0 chr9 130747730 130748017 -11523427 - AluSx SINE Alu -7 305 1 475 332 7 20 chr9 130748306 130748607 -11522837 - L3 LINE CR1 -231 1346 974 353 271 180 8 chr9 130748678 130748800 -11522644 + MIR SINE MIR 2 144 -118 506 317 9 26 chr9 130748829 130749056 -11522388 - L3 LINE CR1 -711 866 644 2535 54 0 13 chr9 130749188 130749503 -11521941 - AluY SINE Alu 0 311 1 378 271 79 55 chr9 130749505 130749866 -11521578 + L1MC4a LINE L1 5517 5947 -189 2466 79 0 0 chr9 130750131 130750436 -11521008 + AluY SINE Alu 1 305 -6 277 176 0 55 chr9 130750516 130750607 -11520837 + (TATATG)n Simple_repeat Simple_repeat 3 88 0 2371 243 52 40 chr9 130751513 130751789 -11519655 + L1ME3 LINE L1 5420 5691 -471 2324 110 0 3 chr9 130751789 130752099 -11519345 - AluSx SINE Alu -3 309 1 2371 243 52 40 chr9 130752099 130752530 -11518914 + L1ME3 LINE L1 5691 6136 -26 1758 171 26 20 chr9 130752823 130753004 -11518440 - AluJb SINE Alu -6 306 121 209 56 0 28 chr9 130753004 130753040 -11518404 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1758 171 26 20 chr9 130753040 130753162 -11518282 - AluJb SINE Alu -191 121 1 844 180 31 16 chr9 130753369 130753563 -11517881 - Charlie4a DNA MER1_type -15 493 297 1855 145 7 30 chr9 130753563 130753708 -11517736 + AluSx SINE Alu 1 137 -175 2554 54 0 0 chr9 130753708 130754004 -11517440 + AluY SINE Alu 1 296 -15 1855 145 7 30 chr9 130754004 130754155 -11517289 + AluSx SINE Alu 137 290 -22 1045 231 22 11 chr9 130754179 130754448 -11516996 - Charlie4a DNA MER1_type -198 310 39 338 262 131 8 chr9 130754485 130754607 -11516837 - MER5A DNA MER1_type 0 189 53 23 78 0 0 chr9 130755045 130755096 -11516348 + AT_rich Low_complexity Low_complexity 1 51 0 1383 222 100 84 chr9 130755404 130755615 -11515829 + L1MC4 LINE L1 7339 7545 -497 1205 153 54 10 chr9 130755615 130755818 -11515626 + L1PA15 LINE L1 5954 6165 0 1383 222 100 84 chr9 130755818 130756299 -11515145 + L1MC4 LINE L1 7545 8042 0 769 269 36 9 chr9 130756476 130756695 -11514749 + MIR SINE MIR 31 255 -7 353 270 132 10 chr9 130756697 130756901 -11514543 + L1ME4a LINE L1 3595 3823 -2323 182 260 104 13 chr9 130757089 130757166 -11514278 - MIR SINE MIR -153 109 26 2053 122 27 0 chr9 130757761 130758055 -11513389 + AluSx SINE Alu 1 302 -10 791 263 150 20 chr9 130758086 130758527 -11512917 + L1ME4a LINE L1 5497 5994 -127 322 244 0 24 chr9 130759442 130759524 -11511920 - L2 LINE L2 0 3272 3193 542 319 14 14 chr9 130759537 130759747 -11511697 + MIR SINE MIR 49 258 -4 1230 261 119 7 chr9 130760144 130760574 -11510870 - MLT1L LTR MaLR -6 609 132 257 143 36 0 chr9 130761783 130761839 -11509605 + CT-rich Low_complexity Low_complexity 2 59 0 324 271 127 55 chr9 130762045 130762281 -11509163 - L2 LINE L2 -174 3139 2887 1990 143 0 34 chr9 130762616 130762938 -11508506 + AluJo SINE Alu 1 311 -1 922 135 0 7 chr9 130763521 130763662 -11507782 + FLAM_C SINE Alu 1 140 -3 2121 100 31 7 chr9 130764704 130765027 -11506417 + AluSx SINE Alu 1 312 0 571 289 66 37 chr9 130765477 130765719 -11505725 - MIR SINE MIR -12 250 2 656 288 81 9 chr9 130766047 130766269 -11505175 - MIR SINE MIR -24 238 1 2170 128 3 0 chr9 130766464 130766761 -11504683 + AluSg SINE Alu 1 298 -12 571 236 187 1 chr9 130767293 130767486 -11503958 + MIR SINE MIR 37 262 0 314 315 46 9 chr9 130767508 130767616 -11503828 - MIR3 SINE MIR -14 194 83 624 287 6 11 chr9 130768113 130768287 -11503157 - MER5B DNA MER1_type -3 175 3 1976 100 60 11 chr9 130768398 130768679 -11502765 - AluSq SINE Alu -18 295 1 221 239 0 0 chr9 130769825 130769871 -11501573 + (TG)n Simple_repeat Simple_repeat 1 46 0 242 19 0 135 chr9 130771015 130771067 -11500377 + L1MA3 LINE L1 6261 6305 0 1984 153 0 13 chr9 130771228 130771541 -11499903 + AluJb SINE Alu 1 309 -3 188 255 78 78 chr9 130772000 130772102 -11499342 - MIR SINE MIR -71 137 36 1363 264 174 29 chr9 130772841 130773642 -11497802 + L2 LINE L2 2395 3308 -5 233 29 29 0 chr9 130773646 130773680 -11497764 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 977 66 8 0 chr9 130773723 130773845 -11497599 + L1MA2 LINE L1 6166 6288 -16 2336 151 25 3 chr9 130773915 130774272 -11497172 + MLT1A1 LTR MaLR 1 365 0 256 274 26 26 chr9 130774280 130774397 -11497047 + L1ME4a LINE L1 5836 5952 -169 872 246 67 37 chr9 130774404 130774701 -11496743 - L2 LINE L2 0 3313 3008 292 299 112 22 chr9 130825253 130825387 -11446057 - MER91A DNA MER1_type -16 180 35 236 185 13 217 chr9 130825406 130825563 -11445881 + MER20B DNA MER1_type 14 138 -645 2085 101 44 0 chr9 130825709 130826005 -11445439 - AluSx SINE Alu -3 309 1 195 274 132 9 chr9 130826237 130826343 -11445101 + MIR SINE MIR 74 192 -70 709 163 81 0 chr9 130826451 130826574 -11444870 - FLAM_C SINE Alu 0 133 1 434 303 29 23 chr9 130826963 130827016 -11444428 - L1ME1 LINE L1 -5 6161 6110 2134 124 0 0 chr9 130827016 130827314 -11444130 + AluSq SINE Alu 1 298 -15 434 303 29 23 chr9 130827314 130827435 -11444009 - L1ME1 LINE L1 -56 6110 5986 202 73 0 194 chr9 130827496 130827620 -11443824 + (TCCC)n Simple_repeat Simple_repeat 1 100 0 188 43 0 149 chr9 130827654 130827701 -11443743 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 471 181 39 11 chr9 130827718 130827857 -11443587 - L1ME2 LINE L1 -146 6024 5880 2033 126 20 0 chr9 130827876 130828177 -11443267 + AluSx SINE Alu 1 307 -5 380 232 21 21 chr9 130828222 130828317 -11443127 - L1ME3 LINE L1 -49 6113 6019 1622 141 15 110 chr9 130828416 130828743 -11442701 - AluJo SINE Alu -6 296 1 2213 107 0 0 chr9 130828821 130829121 -11442323 + AluSq SINE Alu 1 300 -13 2224 174 25 60 chr9 130829125 130829676 -11441768 - L1ME3 LINE L1 -259 5905 5374 2116 96 0 33 chr9 130829702 130830004 -11441440 + AluY SINE Alu 1 292 -19 1193 143 65 14 chr9 130830085 130830301 -11441143 + AluJo SINE Alu 77 303 -9 2191 106 3 0 chr9 130830329 130830630 -11440814 + AluSg SINE Alu 1 302 -8 880 123 0 22 chr9 130830852 130830990 -11440454 - FLAM_C SINE Alu -8 135 1 429 298 152 0 chr9 130831002 130831193 -11440251 - MIR SINE MIR -14 248 29 965 157 0 6 chr9 130831246 130831405 -11440039 - FRAM SINE Alu -8 168 11 206 324 28 0 chr9 130831567 130831638 -11439806 - MIR3 SINE MIR -37 171 99 614 258 86 11 chr9 130832760 130832946 -11438498 - MIR SINE MIR 0 262 63 290 82 41 0 chr9 130833247 130833296 -11438148 + GA-rich Low_complexity Low_complexity 2 52 0 180 0 0 0 chr9 130833366 130833386 -11438058 + (CCCCAG)n Simple_repeat Simple_repeat 4 23 0 1980 124 20 7 chr9 130834647 130834946 -11436498 + AluJo SINE Alu 10 312 0 2320 91 0 3 chr9 130834966 130835274 -11436170 + AluSx SINE Alu 1 307 -5 2242 84 3 10 chr9 130835323 130835633 -11435811 + AluY SINE Alu 1 308 -3 258 188 0 0 chr9 130836289 130836337 -11435107 - L2 LINE L2 0 3272 3225 245 271 75 30 chr9 130836476 130836609 -11434835 - L3 LINE CR1 -20 1557 1419 2177 113 0 3 chr9 130836743 130837045 -11434399 - AluSx SINE Alu -11 301 1 537 301 127 9 chr9 130837109 130837338 -11434106 - MIR SINE MIR 0 262 7 465 293 122 5 chr9 130837674 130837896 -11433548 + MIR SINE MIR 3 250 -12 2279 84 10 0 chr9 130838360 130838668 -11432776 - AluY SINE Alu 0 311 1 229 213 0 0 chr9 130838820 130838867 -11432577 + Alu SINE Alu 118 164 -139 284 289 0 36 chr9 130838985 130839068 -11432376 - HAL1 LINE L1 -1860 647 568 2333 87 0 3 chr9 130839081 130839391 -11432053 - AluY SINE Alu -2 309 1 676 243 0 0 chr9 130839411 130839551 -11431893 - HAL1 LINE L1 -2198 309 170 2039 128 0 3 chr9 130839675 130839973 -11431471 - AluSq SINE Alu -16 297 1 2243 77 0 3 chr9 130839982 130840292 -11431152 - AluSp SINE Alu 0 309 1 714 133 74 37 chr9 130840979 130841114 -11430330 - FLAM_C SINE Alu -2 141 2 1484 206 0 7 chr9 130841170 130841461 -11429983 - L1MB8 LINE L1 -6 6172 5884 2222 97 0 0 chr9 130841464 130841753 -11429691 - AluSx SINE Alu -23 289 1 2214 104 0 0 chr9 130841900 130842198 -11429246 + AluSg1 SINE Alu 1 298 -11 219 319 118 10 chr9 130842259 130842463 -11428981 - L2 LINE L2 -459 2855 2630 291 267 39 62 chr9 130843363 130843466 -11427978 + L1M LINE L1 5259 5333 -813 2028 136 0 13 chr9 130843466 130843776 -11427668 + AluSx SINE Alu 1 306 -6 291 267 39 62 chr9 130843776 130843838 -11427606 + L1M LINE L1 5333 5395 -751 200 182 0 0 chr9 130844115 130844148 -11427296 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1506 174 18 18 chr9 130844150 130844432 -11427012 - AluJo SINE Alu -30 282 1 440 323 164 4 chr9 130844603 130844872 -11426572 + L2 LINE L2 2990 3301 -12 1398 155 89 11 chr9 130844891 130845162 -11426282 + AluJb SINE Alu 11 302 -10 474 246 38 55 chr9 130845163 130845346 -11426098 - L1ME1 LINE L1 -5 6161 5982 2188 108 10 0 chr9 130845474 130845779 -11425665 - AluSg SINE Alu -2 308 1 576 220 73 7 chr9 130846214 130846364 -11425080 + MIR3 SINE MIR 10 169 -39 372 262 183 0 chr9 130846653 130846779 -11424665 - MIR SINE MIR -33 229 81 209 275 121 0 chr9 130846781 130846872 -11424572 + L2 LINE L2 3209 3310 -3 235 350 21 10 chr9 130847015 130847112 -11424332 + L3 LINE CR1 1386 1483 -94 627 264 137 13 chr9 130848588 130848815 -11422629 - MIR SINE MIR -6 256 2 415 348 16 11 chr9 130849874 130850061 -11421383 - MIR SINE MIR -12 250 63 2314 94 10 0 chr9 130850705 130851012 -11420432 + AluSx SINE Alu 1 310 -2 1832 137 20 7 chr9 130851022 130851328 -11420116 + AluJb SINE Alu 1 310 -2 947 115 0 0 chr9 130851342 130851472 -11419972 + AluJb SINE Alu 164 293 -19 1988 86 38 24 chr9 130851578 130851870 -11419574 + AluSc SINE Alu 1 296 -13 2276 97 3 0 chr9 130852008 130852318 -11419126 + AluSx SINE Alu 1 311 -1 237 338 0 12 chr9 130852560 130852640 -11418804 + MIR SINE MIR 63 141 -67 196 167 48 0 chr9 130852746 130852788 -11418656 - MIR SINE MIR -61 147 104 2201 101 0 0 chr9 130853392 130853689 -11417755 + AluSx SINE Alu 1 297 -15 1215 131 0 5 chr9 130854063 130854254 -11417190 - AluSp SINE Alu -123 190 1 1783 159 27 0 chr9 130854259 130854560 -11416884 - AluJb SINE Alu -3 309 1 754 131 0 0 chr9 130854771 130854878 -11416566 - HY1 scRNA scRNA -1 111 5 1614 226 36 151 chr9 130854982 130855241 -11416203 - L1ME3A LINE L1 -254 5908 5621 1832 149 87 34 chr9 130855241 130855597 -11415847 + THE1C LTR MaLR 1 375 0 1614 226 36 151 chr9 130855597 130855775 -11415669 - L1ME3A LINE L1 -541 5621 5424 2300 70 0 7 chr9 130855775 130856075 -11415369 - AluY SINE Alu -13 298 1 1614 226 36 151 chr9 130856075 130856266 -11415178 - L1ME3A LINE L1 -738 5424 5373 2198 114 0 0 chr9 130856266 130856563 -11414881 - AluSx SINE Alu -8 304 8 1614 226 36 151 chr9 130856563 130856768 -11414676 - L1ME3A LINE L1 -789 5373 5146 317 296 6 0 chr9 130857113 130857285 -11414159 + (TG)n Simple_repeat Simple_repeat 1 173 0 323 330 28 0 chr9 130857489 130857598 -11413846 - MIR SINE MIR 0 262 151 236 280 70 0 chr9 130857598 130857698 -11413746 - L3 LINE CR1 -100 1477 1371 303 280 47 19 chr9 130858105 130858212 -11413232 - MIR SINE MIR -78 130 21 2308 88 3 0 chr9 130858743 130859049 -11412395 - AluSp SINE Alu -4 309 3 1805 98 0 0 chr9 130859061 130859318 -11412126 - AluSx SINE Alu 0 311 55 1271 100 23 64 chr9 130859525 130859745 -11411699 + L1PA11 LINE L1 5964 6174 0 2312 88 0 10 chr9 130859790 130860097 -11411347 + AluSx SINE Alu 1 304 -8 1882 142 3 16 chr9 130860298 130860615 -11410829 - MLT1B LTR MaLR -77 313 1 547 280 48 12 chr9 130860730 130860898 -11410546 - MIR SINE MIR -78 184 11 492 232 0 0 chr9 130861141 130861236 -11410208 + MER3 DNA MER1_type 5 99 -110 268 241 0 0 chr9 130861240 130861294 -11410150 + MER3 DNA MER1_type 48 101 -108 732 230 0 18 chr9 130861296 130861461 -11409983 + MER3 DNA MER1_type 48 209 0 1845 150 7 0 chr9 130861524 130861817 -11409627 - AluJo SINE Alu -17 295 1 2131 85 0 7 chr9 130863207 130863511 -11407933 - AluSx SINE Alu 0 302 1 201 373 7 7 chr9 130864165 130864307 -11407137 + L2 LINE L2 2918 3059 -213 355 258 178 12 chr9 130864417 130864580 -11406864 - MIR SINE MIR -65 197 8 200 329 85 0 chr9 130864626 130864708 -11406736 + L2 LINE L2 3143 3231 -41 365 123 0 111 chr9 130864793 130864874 -11406570 + MIR SINE MIR 106 177 -85 2313 80 0 46 chr9 130864963 130865290 -11406154 - AluSx SINE Alu 0 312 1 306 289 35 18 chr9 130865391 130865505 -11405939 - MIR3 SINE MIR -29 179 64 202 346 46 81 chr9 130867289 130867549 -11403895 - L2 LINE L2 -119 3153 2903 187 259 17 17 chr9 130867844 130867902 -11403542 + L2 LINE L2 3028 3085 -187 507 319 114 8 chr9 130867973 130868236 -11403208 + L1ME LINE L1 5295 5585 -577 2386 82 0 0 chr9 130868281 130868584 -11402860 + AluSx SINE Alu 1 303 -9 361 310 120 33 chr9 130868592 130868776 -11402668 - L1ME4a LINE L1 -204 5917 5718 1191 123 6 0 chr9 130868778 130868949 -11402495 - AluSq SINE Alu -141 172 1 2073 99 14 3 chr9 130869175 130869467 -11401977 + AluSc SINE Alu 1 295 -14 389 295 72 42 chr9 130869641 130869744 -11401700 + MIR SINE MIR 58 156 -106 1870 146 30 0 chr9 130869744 130870039 -11401405 + AluSx SINE Alu 1 304 -8 389 295 72 42 chr9 130870039 130870128 -11401316 + MIR SINE MIR 156 256 -6 344 313 55 8 chr9 130870408 130870536 -11400908 - MIR3 SINE MIR -7 201 68 327 270 81 14 chr9 130870938 130871086 -11400358 + MIR3 SINE MIR 24 181 -27 259 260 95 41 chr9 130871827 130871996 -11399448 + MER5B DNA MER1_type 1 178 0 358 273 97 10 chr9 130872160 130872330 -11399114 + L1ME LINE L1 5656 5834 -310 231 303 0 55 chr9 130872442 130872551 -11398893 + HAL1b LINE L1 1235 1337 -11 22 0 0 0 chr9 130872581 130872603 -11398841 + AT_rich Low_complexity Low_complexity 1 22 0 2380 80 0 13 chr9 130872644 130872955 -11398489 - AluSq SINE Alu -6 307 1 1803 142 10 3 chr9 130872963 130873252 -11398192 - AluJo SINE Alu -20 292 2 547 239 33 42 chr9 130873620 130873744 -11397700 - L1ME1 LINE L1 -1 6165 6042 2183 105 0 10 chr9 130873744 130874049 -11397395 + AluSx SINE Alu 1 302 -10 547 239 33 42 chr9 130874049 130874137 -11397307 - L1ME1 LINE L1 -124 6042 5955 1285 163 0 25 chr9 130874139 130874379 -11397065 - AluJo SINE Alu 0 312 79 738 277 69 67 chr9 130874524 130874684 -11396760 - L1ME1 LINE L1 -399 5763 5605 2355 79 3 0 chr9 130874684 130874987 -11396457 + AluSx SINE Alu 4 307 -5 738 277 69 67 chr9 130874987 130875202 -11396242 - L1ME1 LINE L1 -557 5605 5387 320 141 16 62 chr9 130875205 130875291 -11396153 - AluSg/x SINE Alu 0 301 219 858 150 21 0 chr9 130875392 130875532 -11395912 + AluJb SINE Alu 144 286 -26 180 0 0 0 chr9 130875534 130875554 -11395890 + (TG)n Simple_repeat Simple_repeat 1 20 0 2320 110 138 34 chr9 130875560 130875826 -11395618 - Tigger3b DNA MER2_type -2457 571 334 1382 155 132 4 chr9 130875826 130876084 -11395360 + AluJo SINE Alu 1 291 -21 2320 110 138 34 chr9 130876084 130876282 -11395162 - Tigger3b DNA MER2_type -2694 334 59 2522 50 0 0 chr9 130876288 130876591 -11394853 + AluY SINE Alu 1 303 -8 1660 122 8 0 chr9 130878477 130878715 -11392729 + AluSg SINE Alu 53 292 -18 1120 210 105 4 chr9 130879016 130879273 -11392171 - AluJo SINE Alu -16 286 4 216 189 200 42 chr9 130879747 130879842 -11391602 - MER5B DNA MER1_type 0 178 69 1404 143 143 8 chr9 130879923 130880188 -11391256 + AluSg1 SINE Alu 1 301 -8 237 357 127 0 chr9 130881412 130881538 -11389906 + MIR SINE MIR 107 248 -14 273 167 94 0 chr9 130881738 130881817 -11389627 + MIR SINE MIR 68 152 -65 185 62 0 31 chr9 130882730 130882762 -11388682 + (CTCA)n Simple_repeat Simple_repeat 2 32 0 2361 66 0 0 chr9 130885642 130885958 -11385486 - AluSg SINE Alu 0 316 1 810 171 0 0 chr9 130885960 130886083 -11385361 - FRAM SINE Alu -16 160 38 977 176 6 0 chr9 130886094 130886259 -11385185 - L1PA16 LINE L1 -3 6163 5998 2089 107 0 10 chr9 130886281 130886571 -11384873 - AluSx SINE Alu -25 287 1 850 145 8 8 chr9 130886590 130886721 -11384723 - FLAM_C SINE Alu -2 131 1 21 0 0 0 chr9 130886721 130886742 -11384702 + AT_rich Low_complexity Low_complexity 1 21 0 1653 94 16 88 chr9 130886864 130887219 -11384225 + L1M1 LINE L1 5214 5544 -747 531 165 21 10 chr9 130887219 130887316 -11384128 + MER4A LTR ERV1 1 98 -566 * 1470 133 10 100 chr9 130887312 130887511 -11383933 + MER4A LTR ERV1 257 465 -199 2117 110 3 3 chr9 130887511 130887811 -11383633 - AluSx SINE Alu -12 300 1 1470 133 10 100 chr9 130887811 130887995 -11383449 + MER4A LTR ERV1 465 664 0 2759 83 28 148 chr9 130887995 130888570 -11382874 + L1MA2 LINE L1 5541 6046 -259 1335 88 15 10 chr9 130888577 130888782 -11382662 + MER41B LTR ERV1 1 206 -429 1884 89 107 4 chr9 130888889 130889169 -11382275 + AluSc SINE Alu 1 309 0 1014 163 74 5 chr9 130889183 130889398 -11382046 + MLT1B LTR MaLR 157 386 -4 381 225 45 27 chr9 130889458 130889569 -11381875 - MIR SINE MIR -117 145 33 184 347 83 25 chr9 130890087 130890208 -11381236 - MIR SINE MIR -17 245 118 401 245 77 155 chr9 130890785 130891328 -11380116 + L2 LINE L2 2777 3272 0 264 265 36 0 chr9 130891338 130891421 -11380023 - MIR3 SINE MIR -52 156 71 297 0 0 0 chr9 130891425 130891453 -11379991 + (TA)n Simple_repeat Simple_repeat 1 61 0 297 0 0 0 chr9 130891453 130891486 -11379958 + (TA)n Simple_repeat Simple_repeat 2 34 0 343 290 148 6 chr9 130891528 130891690 -11379754 - MIR SINE MIR -77 185 1 249 346 46 26 chr9 130892672 130892825 -11378619 - MIR SINE MIR -79 183 28 210 245 38 0 chr9 130893492 130893545 -11377899 + GA-rich Low_complexity Low_complexity 1 55 0 280 312 24 48 chr9 130893589 130893714 -11377730 + MIR SINE MIR 33 154 -108 243 278 189 0 chr9 130893747 130893837 -11377607 + MIR SINE MIR 137 243 -19 305 323 22 14 chr9 130893901 130894091 -11377353 - MIR SINE MIR -12 250 2 493 251 80 75 chr9 130894284 130894358 -11377086 + MER5A DNA MER1_type 1 73 -116 2281 92 0 0 chr9 130894358 130894664 -11376780 + AluSc SINE Alu 3 308 -1 493 251 80 75 chr9 130894664 130894776 -11376668 + MER5A DNA MER1_type 73 188 -1 194 315 79 0 chr9 130895731 130895820 -11375624 - MIR SINE MIR -65 143 48 227 319 32 0 chr9 130896013 130896107 -11375337 + MIR3 SINE MIR 91 187 -21 306 223 181 0 chr9 130896247 130896341 -11375103 + MIR SINE MIR 60 170 -92 306 357 50 0 chr9 130897485 130897625 -11373819 + MIR SINE MIR 23 169 -93 2059 93 0 4 chr9 130897676 130897955 -11373489 + AluSx SINE Alu 1 278 -34 180 176 27 27 chr9 130897989 130898063 -11373381 + (TTA)n Simple_repeat Simple_repeat 2 75 0 473 141 0 0 chr9 130898721 130898792 -11372652 + AluJ/FLAM SINE Alu 2 72 -240 300 169 68 0 chr9 130898999 130899058 -11372386 - MIR SINE MIR -83 179 117 1906 139 7 3 chr9 130899215 130899510 -11371934 + AluJb SINE Alu 1 296 -16 2057 107 0 29 chr9 130899527 130899837 -11371607 + AluSx SINE Alu 12 312 0 282 255 167 10 chr9 130899837 130899939 -11371505 - MIR3 SINE MIR -26 182 65 1669 130 40 47 chr9 130900645 130900945 -11370499 + AluSx SINE Alu 1 298 -14 1937 130 0 29 chr9 130901070 130901207 -11370237 + AluJo SINE Alu 1 140 -172 1884 136 42 0 chr9 130901207 130901494 -11369950 + AluSx SINE Alu 1 299 -13 2281 56 0 3 chr9 130901494 130901802 -11369642 + AluY SINE Alu 1 307 0 1937 130 0 29 chr9 130901802 130901977 -11369467 + AluJo SINE Alu 138 306 -6 553 200 0 0 chr9 130902515 130902620 -11368824 - MIR SINE MIR -111 151 47 255 354 12 0 chr9 130903110 130903192 -11368252 - MIR SINE MIR -54 208 126 192 247 135 11 chr9 130903897 130903986 -11367458 + L2 LINE L2 3152 3251 -21 184 294 137 0 chr9 130904830 130904932 -11366512 - MIR SINE MIR -113 149 34 1486 129 0 0 chr9 130905648 130905865 -11365579 + AluSq SINE Alu 95 311 -2 1281 39 7 0 chr9 130905865 130906019 -11365425 + L1MA2 LINE L1 6150 6304 0 748 155 0 9 chr9 130906452 130906568 -11364876 + AluJ SINE Alu 3 117 -195 973 185 28 0 chr9 130906619 130906797 -11364647 + AluJ SINE Alu 108 290 -22 2441 68 0 3 chr9 130906807 130907116 -11364328 + AluY SINE Alu 1 308 -3 2085 127 3 0 chr9 130907120 130907420 -11364024 + AluSx SINE Alu 1 301 -11 1634 157 56 0 chr9 130907421 130907725 -11363719 + AluJb SINE Alu 1 319 0 1917 105 0 15 chr9 130907836 130908103 -11363341 + AluSg SINE Alu 3 265 -45 366 213 92 35 chr9 130908728 130908869 -11362575 + MIR3 SINE MIR 33 181 -27 193 275 163 0 chr9 130909509 130909589 -11361855 + L2 LINE L2 3183 3275 -38 335 282 110 0 chr9 130910272 130910444 -11361000 - MIR3 SINE MIR -65 143 11 263 299 0 0 chr9 130910473 130910550 -11360894 + L3 LINE CR1 1413 1489 -88 337 227 13 13 chr9 130911023 130911098 -11360346 + L2 LINE L2 3231 3305 -8 184 406 19 9 chr9 130911285 130911391 -11360053 - MIR SINE MIR -124 138 32 320 288 110 7 chr9 130911811 130911957 -11359487 - MIR SINE MIR -73 189 29 200 238 143 0 chr9 130912701 130912764 -11358680 + MIR SINE MIR 177 248 -14 188 171 24 24 chr9 130912736 130912777 -11358667 + L2 LINE L2 3225 3265 -7 * 344 311 43 18 chr9 130913136 130913300 -11358144 + L1ME4a LINE L1 5733 5900 -221 2043 101 31 0 chr9 130913879 130914166 -11357278 - AluSx SINE Alu -15 297 2 2060 131 3 0 chr9 130914364 130914662 -11356782 + AluSq SINE Alu 1 299 -14 425 298 113 22 chr9 130914664 130914944 -11356500 + L1MC4a LINE L1 5616 5936 -185 2202 87 28 0 chr9 130914944 130915233 -11356211 + AluSx SINE Alu 1 297 -15 425 298 113 22 chr9 130915233 130915335 -11356109 + L1MC4a LINE L1 5936 6027 -94 1210 170 0 5 chr9 130915408 130915614 -11355830 - AluJo SINE Alu -107 205 1 1156 182 14 18 chr9 130915638 130915858 -11355586 + L1MB8 LINE L1 5955 6173 -5 1930 132 37 3 chr9 130915863 130916159 -11355285 + AluSx SINE Alu 1 306 -6 1677 119 68 22 chr9 130916170 130916283 -11355161 + AluJo SINE Alu 5 111 -201 198 0 0 0 chr9 130916283 130916305 -11355139 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 270 0 0 0 chr9 130916304 130916334 -11355110 + (CA)n Simple_repeat Simple_repeat 1 30 0 1677 119 68 22 chr9 130916305 130916498 -11354946 + AluJo SINE Alu 111 295 -17 416 281 0 6 chr9 130916590 130916723 -11354721 - MIR3 SINE MIR -21 187 56 203 258 0 30 chr9 130917416 130917482 -11353962 - L2 LINE L2 -52 3220 3157 210 277 0 0 chr9 130917970 130918017 -11353427 - L2 LINE L2 -79 3193 3147 229 257 27 14 chr9 130918473 130918547 -11352897 + MIR3 SINE MIR 130 204 -4 527 279 23 81 chr9 130919386 130919644 -11351800 + MIR SINE MIR 19 261 -1 2181 103 0 7 chr9 130920337 130920647 -11350797 + AluY SINE Alu 1 308 -3 251 294 35 12 chr9 130920714 130920799 -11350645 - MIR SINE MIR -71 191 105 212 213 100 50 chr9 130920802 130920882 -11350562 + L3 LINE CR1 1482 1565 -12 188 324 0 14 chr9 130921315 130921386 -11350058 - L2 LINE L2 -64 3208 3139 511 209 8 16 chr9 130921650 130921779 -11349665 + MER2 DNA MER2_type 193 320 -25 2498 53 0 6 chr9 130921854 130922172 -11349272 + AluYb8 SINE Alu 1 316 -2 1058 148 0 0 chr9 130922173 130922369 -11349075 + AluSg/x SINE Alu 119 314 0 795 174 7 28 chr9 130923049 130923193 -11348251 - AluJo SINE Alu -170 142 2 186 309 114 19 chr9 130923206 130923409 -11348035 - L2 LINE L2 -1 3312 2976 753 155 0 0 chr9 130923428 130923576 -11347868 + (TG)n Simple_repeat Simple_repeat 2 149 0 2249 108 0 13 chr9 130924102 130924281 -11347163 - AluSx SINE Alu 0 312 137 2144 99 17 0 chr9 130924281 130924575 -11346869 - AluSq SINE Alu -14 299 1 2249 108 0 13 chr9 130924575 130924711 -11346733 - AluSx SINE Alu -175 137 1 684 171 106 8 chr9 130924711 130924834 -11346610 - AluJo SINE Alu -176 136 2 443 231 68 41 chr9 130924844 130924991 -11346453 - L1MC4 LINE L1 -319 7723 7573 1157 172 38 10 chr9 130924998 130925207 -11346237 + MER20 DNA MER1_type 2 216 -3 1353 270 75 9 chr9 130925212 130925599 -11345845 + L2 LINE L2 2686 3136 -177 1973 108 0 65 chr9 130925599 130925922 -11345522 - AluSx SINE Alu -10 302 1 1353 270 75 9 chr9 130925922 130926110 -11345334 + L2 LINE L2 3136 3310 -3 671 288 66 4 chr9 130926112 130926355 -11345089 + MIR SINE MIR 5 262 0 414 143 10 31 chr9 130926563 130926661 -11344783 + GA-rich Low_complexity Low_complexity 4 99 0 841 175 57 53 chr9 130926775 130926872 -11344572 - MER96B DNA MER1_type? -18 399 304 2185 93 14 0 chr9 130926872 130927162 -11344282 + AluSc SINE Alu 1 294 -15 841 175 57 53 chr9 130927162 130927292 -11344152 - MER96B DNA MER1_type? -113 304 171 787 183 35 6 chr9 130927603 130927772 -11343672 - LTR48B LTR ERV1 -35 609 436 2020 139 3 3 chr9 130927790 130928100 -11343344 - AluSx SINE Alu 0 312 3 1922 114 28 7 chr9 130928102 130928392 -11343052 - AluSx SINE Alu -16 296 1 285 284 19 33 chr9 130928395 130928505 -11342939 - L1M4 LINE L1 -2982 3164 3057 2143 82 41 0 chr9 130928505 130928798 -11342646 - AluY SINE Alu -6 305 1 285 284 19 33 chr9 130928798 130928898 -11342546 - L1M4 LINE L1 -3089 3057 2957 2185 97 10 13 chr9 130928906 130929217 -11342227 - AluSg SINE Alu 0 310 1 2335 95 0 0 chr9 130929465 130929769 -11341675 + AluSx SINE Alu 1 304 -8 1730 156 16 25 chr9 130930081 130930396 -11341048 - AluJb SINE Alu 0 312 1 2115 112 0 13 chr9 130930556 130930859 -11340585 - AluSq SINE Alu -14 299 1 1574 128 9 84 chr9 130930859 130931179 -11340265 - AluJo SINE Alu -16 296 1 2235 84 3 14 chr9 130931431 130931728 -11339716 + AluSp SINE Alu 1 294 -19 247 246 55 36 chr9 130932050 130932160 -11339284 - MIR SINE MIR -73 135 24 213 342 0 0 chr9 130932223 130932299 -11339145 + G-rich Low_complexity Low_complexity 1 76 0 347 200 17 0 chr9 130932372 130932432 -11339012 - AluJ/FLAM SINE Alu -231 71 11 311 137 0 0 chr9 130932424 130932475 -11338969 + MER69 DNA AcHobo 2473 2523 -3 * 295 149 45 30 chr9 130932663 130932691 -11338753 - MER69A DNA AcHobo -2396 130 104 1865 116 18 0 chr9 130932691 130932997 -11338447 + AluSx SINE Alu 1 311 0 295 149 45 30 chr9 130932997 130933034 -11338410 - MER69A DNA AcHobo -2422 104 63 23 22 0 44 chr9 130933236 130933258 -11338186 + AT_rich Low_complexity Low_complexity 1 22 -21 2206 105 3 0 chr9 130933258 130933563 -11337881 + AluSx SINE Alu 1 306 -6 23 22 0 44 chr9 130933563 130933585 -11337859 + AT_rich Low_complexity Low_complexity 22 43 0 328 300 62 57 chr9 130933715 130933925 -11337519 - L2 LINE L2 -158 3114 2904 2181 78 17 0 chr9 130934112 130934407 -11337037 + AluY SINE Alu 6 305 -6 1922 114 28 7 chr9 130934520 130934810 -11336634 + AluSx SINE Alu 1 296 -16 2020 139 3 3 chr9 130934812 130935122 -11336322 + AluSx SINE Alu 3 312 0 787 183 35 6 chr9 130935140 130935309 -11336135 + LTR48B LTR ERV1 436 609 -35 841 175 57 53 chr9 130935620 130935750 -11335694 + MER96B DNA MER1_type? 171 304 -113 2185 93 14 0 chr9 130935750 130936040 -11335404 - AluSc SINE Alu -15 294 1 841 175 57 53 chr9 130936040 130936137 -11335307 + MER96B DNA MER1_type? 304 399 -18 195 122 20 61 chr9 130936800 130936849 -11334595 + MIR SINE MIR 102 148 -60 199 0 0 0 chr9 130937233 130937255 -11334189 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 2024 131 7 0 chr9 130937255 130937537 -11333907 - AluSx SINE Alu -1 305 1 1863 141 10 46 chr9 130937554 130937860 -11333584 - AluJo SINE Alu -5 307 13 26 0 0 0 chr9 130937879 130937905 -11333539 + AT_rich Low_complexity Low_complexity 1 26 0 2080 134 0 7 chr9 130937883 130938194 -11333250 - AluSx SINE Alu 0 312 1 424 261 76 6 chr9 130938205 130938335 -11333109 + MIR SINE MIR 111 250 -12 853 172 88 88 chr9 130938445 130938481 -11332963 - L1ME3 LINE L1 -6 6156 6121 2410 74 3 3 chr9 130938481 130938777 -11332667 - AluSp SINE Alu -17 296 1 853 172 88 88 chr9 130938777 130939013 -11332431 - L1ME3 LINE L1 -40 6122 5884 1023 148 6 6 chr9 130939197 130939359 -11332085 + FAM SINE Alu 1 162 -13 615 62 0 0 chr9 130939359 130939439 -11332005 + (TA)n Simple_repeat Simple_repeat 2 81 0 2043 99 20 41 chr9 130939494 130939815 -11331629 - AluSc SINE Alu 0 309 1 475 294 117 41 chr9 130939994 130940310 -11331134 + L2 LINE L2 2904 3243 -29 2414 78 0 3 chr9 130940867 130941163 -11330281 - AluSc SINE Alu -14 295 1 1840 119 0 0 chr9 130941163 130941415 -11330029 - AluSx SINE Alu -14 298 47 563 138 0 0 chr9 130941431 130941518 -11329926 + AluSc SINE Alu 222 308 -1 570 75 38 12 chr9 130941576 130941656 -11329788 - 7SLRNA srpRNA srpRNA -3 317 236 268 128 0 0 chr9 130941656 130941695 -11329749 - AluSx SINE Alu -263 39 1 184 254 136 17 chr9 130941698 130941757 -11329687 + L2 LINE L2 2719 2784 -530 758 182 128 0 chr9 130941795 130941943 -11329501 + MIR SINE MIR 38 204 -58 1942 156 0 0 chr9 130941981 130942263 -11329181 - AluJo SINE Alu -30 282 1 26 30 0 0 chr9 130942297 130942330 -11329114 + AT_rich Low_complexity Low_complexity 1 33 0 626 220 15 0 chr9 130942353 130942485 -11328959 + L2 LINE L2 3173 3306 -7 298 213 138 25 chr9 130942514 130942594 -11328850 - MER119 DNA MER1_type 0 583 495 946 143 0 0 chr9 130942597 130942730 -11328714 + FLAM_C SINE Alu 1 133 0 1064 157 46 15 chr9 130942761 130942958 -11328486 + MSTD LTR MaLR 194 396 0 483 176 0 0 chr9 130943039 130943130 -11328314 + CT-rich Low_complexity Low_complexity 1 91 0 976 188 6 0 chr9 130943130 130943290 -11328154 - AluJo SINE Alu -25 287 127 2370 110 0 0 chr9 130943292 130943600 -11327844 - AluSc SINE Alu -1 308 1 342 0 0 0 chr9 130943600 130943638 -11327806 + (T)n Simple_repeat Simple_repeat 1 38 0 923 174 0 0 chr9 130943661 130943799 -11327645 - AluJo SINE Alu -174 138 1 2000 161 0 10 chr9 130943840 130944151 -11327293 - AluJb SINE Alu -2 310 3 2058 147 18 28 chr9 130944171 130944555 -11326889 + MER41D LTR ERV1 1 435 -122 2216 133 0 6 chr9 130944555 130944870 -11326574 - AluSq SINE Alu 0 313 1 2058 147 18 28 chr9 130944870 130944992 -11326452 + MER41D LTR ERV1 435 557 0 551 282 18 18 chr9 130944992 130945162 -11326282 - MER119 DNA MER1_type -350 233 64 2363 106 3 3 chr9 130945164 130945476 -11325968 + AluSq SINE Alu 1 312 -1 28 0 0 26 chr9 130945477 130945504 -11325940 + AT_rich Low_complexity Low_complexity 1 28 -10 2025 164 0 13 chr9 130945504 130945640 -11325804 + AluJo SINE Alu 1 137 -175 2372 100 0 0 chr9 130945640 130945931 -11325513 + AluSg SINE Alu 1 291 -19 2025 164 0 13 chr9 130945931 130946104 -11325340 + AluJo SINE Alu 137 306 -6 28 0 0 26 chr9 130946104 130946115 -11325329 + AT_rich Low_complexity Low_complexity 28 38 0 21 0 0 0 chr9 130946204 130946225 -11325219 + AT_rich Low_complexity Low_complexity 1 21 0 1173 123 0 39 chr9 130946237 130946397 -11325047 - AluSg/x SINE Alu -21 289 124 207 0 0 0 chr9 130946397 130946420 -11325024 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2144 123 3 0 chr9 130946420 130946704 -11324740 - AluSx SINE Alu -27 285 1 1173 123 0 39 chr9 130946704 130946721 -11324723 - AluSg/x SINE Alu -184 126 118 2129 136 0 3 chr9 130946736 130947023 -11324421 + AluSx SINE Alu 1 286 -26 216 97 0 0 chr9 130947026 130947057 -11324387 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1836 176 0 0 chr9 130947176 130947494 -11323950 - AluJb SINE Alu 0 318 1 269 119 24 0 chr9 130948109 130948151 -11323293 + MER4D LTR ERV1 760 802 -70 2194 97 17 13 chr9 130948173 130948473 -11322971 + AluSx SINE Alu 1 301 -11 242 267 22 22 chr9 130948521 130948611 -11322833 + Charlie8 DNA MER1_type 166 255 -2162 232 309 12 12 chr9 130948961 130949042 -11322402 - MIR SINE MIR -2 260 180 723 231 91 10 chr9 130949772 130949977 -11321467 + MIR SINE MIR 33 257 -5 2502 78 0 0 chr9 130950022 130950330 -11321114 - AluY SINE Alu -3 308 1 232 259 12 71 chr9 130950364 130950449 -11320995 - MIR SINE MIR -80 182 103 213 65 0 0 chr9 130950621 130950652 -11320792 + (T)n Simple_repeat Simple_repeat 1 31 0 341 326 102 42 chr9 130950780 130951182 -11320262 + L2 LINE L2 2837 3262 -10 205 271 118 12 chr9 130951561 130951646 -11319798 + MIR SINE MIR 31 124 -84 196 275 317 0 chr9 130951679 130951821 -11319623 + MIR SINE MIR 2 188 -74 1789 64 4 9 chr9 130951973 130952237 -11319207 + AluSg/x SINE Alu 81 343 0 23 0 0 0 chr9 130952967 130952990 -11318454 + GC_rich Low_complexity Low_complexity 1 23 0 39 50 0 0 chr9 130953116 130953176 -11318268 + GC_rich Low_complexity Low_complexity 1 60 0 251 241 7 21 chr9 130953678 130953823 -11317621 + CT-rich Low_complexity Low_complexity 4 146 0 228 347 6 23 chr9 130953836 130954012 -11317432 + C-rich Low_complexity Low_complexity 1 173 0 24 0 0 0 chr9 130954053 130954077 -11317367 + GC_rich Low_complexity Low_complexity 1 24 0 340 255 11 43 chr9 130954998 130955092 -11316352 - MIR3 SINE MIR -21 187 97 658 163 31 0 chr9 130955259 130955357 -11316087 + AluJo SINE Alu 34 134 -178 2248 105 23 3 chr9 130955618 130955924 -11315520 + AluSx SINE Alu 1 312 0 891 102 8 0 chr9 130956080 130956198 -11315246 + AluSp/q SINE Alu 178 296 -17 325 330 119 25 chr9 130956602 130957081 -11314363 + L1M4 LINE L1 4479 5002 -1144 21 57 0 0 chr9 130957319 130957354 -11314090 + AT_rich Low_complexity Low_complexity 1 35 0 1721 225 90 34 chr9 130957367 130957869 -11313575 - MLT1F LTR MaLR -2 540 11 30 45 0 0 chr9 130958018 130958062 -11313382 + AT_rich Low_complexity Low_complexity 1 44 0 635 276 65 26 chr9 130958139 130958211 -11313233 - MIR SINE MIR 0 262 194 2198 101 34 3 chr9 130958211 130958509 -11312935 - AluSx SINE Alu -5 307 1 635 276 65 26 chr9 130958509 130958691 -11312753 - MIR SINE MIR -68 194 3 561 246 66 6 chr9 130959465 130959632 -11311812 - MIR SINE MIR 0 262 86 2081 106 3 20 chr9 130959669 130959962 -11311482 - AluSx SINE Alu -23 289 2 614 338 65 4 chr9 130959980 130960211 -11311233 - MIR SINE MIR -2 260 16 1702 143 17 61 chr9 130960266 130960444 -11311000 - AluJo SINE Alu -7 305 144 2318 106 0 3 chr9 130960444 130960737 -11310707 - AluSc SINE Alu -17 292 1 1702 143 17 61 chr9 130960737 130960852 -11310592 - AluJo SINE Alu -168 144 25 242 286 14 0 chr9 130960944 130961014 -11310430 + MIR SINE MIR 34 104 -104 1839 148 44 27 chr9 130961132 130961271 -11310173 + AluJb SINE Alu 1 136 -176 2441 84 3 0 chr9 130961271 130961569 -11309875 + AluSx SINE Alu 1 299 -13 1839 148 44 27 chr9 130961569 130961727 -11309717 + AluJb SINE Alu 136 303 -9 2371 103 0 0 chr9 130961737 130962038 -11309406 + AluSq SINE Alu 1 301 -12 2238 145 31 87 chr9 130962043 130962080 -11309364 + L1MB7 LINE L1 5574 5612 -572 2406 100 0 3 chr9 130962080 130962389 -11309055 + AluSp SINE Alu 1 308 -5 2238 145 31 87 chr9 130962389 130962673 -11308771 + L1MB7 LINE L1 5612 5859 -325 2162 118 0 0 chr9 130962673 130962983 -11308461 + AluSq SINE Alu 1 310 0 2238 145 31 87 chr9 130962983 130963175 -11308269 + L1MB7 LINE L1 5859 6060 -124 494 154 0 0 chr9 130963178 130963256 -11308188 + AluJ/FRAM SINE Alu 219 296 -16 2045 161 3 0 chr9 130963655 130963954 -11307490 - AluJo SINE Alu -12 300 1 2052 148 7 0 chr9 130964058 130964368 -11307076 + AluSx SINE Alu 1 312 0 311 262 65 37 chr9 130964725 130964832 -11306612 - L2 LINE L2 -5 3308 3199 1655 179 4 7 chr9 130964865 130965000 -11306444 + AluJb SINE Alu 1 135 -177 432 0 0 0 chr9 130965000 130965048 -11306396 + (TA)n Simple_repeat Simple_repeat 2 49 0 1655 179 4 7 chr9 130965048 130965192 -11306252 + AluJb SINE Alu 135 279 -33 222 118 0 0 chr9 130965192 130965226 -11306218 + (CA)n Simple_repeat Simple_repeat 1 34 0 2354 117 0 0 chr9 130965250 130965557 -11305887 + AluSx SINE Alu 1 307 -5 2359 84 3 10 chr9 130965606 130965916 -11305528 + AluY SINE Alu 1 308 -3 2350 93 0 0 chr9 130965968 130966258 -11305186 - AluSx SINE Alu -22 290 1 2444 84 0 31 chr9 130966500 130966820 -11304624 + AluSg SINE Alu 1 310 0 2140 121 0 7 chr9 130966940 130967230 -11304214 - AluSc SINE Alu -17 292 5 266 275 33 17 chr9 130967266 130967386 -11304058 - L1M4 LINE L1 -3062 3084 2963 2275 129 3 0 chr9 130967404 130967715 -11303729 - AluSx SINE Alu 0 312 1 809 161 101 42 chr9 130967751 130967919 -11303525 - FRAM SINE Alu 0 176 1 1468 163 101 8 chr9 130968469 130968727 -11302717 - AluJo SINE Alu -30 282 1 1807 195 0 19 chr9 130968751 130968931 -11302513 - AluJb SINE Alu 0 312 139 240 35 0 0 chr9 130968931 130968960 -11302484 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1807 195 0 19 chr9 130968960 130969097 -11302347 - AluJb SINE Alu -173 139 1 1680 145 0 122 chr9 130969155 130969499 -11301945 - AluSx SINE Alu 0 302 1 271 268 52 31 chr9 130969838 130969935 -11301509 - L2 LINE L2 -1 3312 3214 367 339 107 13 chr9 130970075 130970627 -11300817 - L2 LINE L2 -351 2963 2360 1753 163 14 0 chr9 130971172 130971292 -11300152 + AluJo SINE Alu 1 118 -194 198 0 0 0 chr9 130971292 130971314 -11300130 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1753 163 14 0 chr9 130971314 130971470 -11299974 + AluJo SINE Alu 118 281 -31 1808 146 86 23 chr9 130971472 130971822 -11299622 + THE1C LTR MaLR 4 375 0 251 329 14 0 chr9 130971848 130971921 -11299523 - L3 LINE CR1 -1 1576 1503 2190 129 0 3 chr9 130972686 130972989 -11298455 + AluSx SINE Alu 1 302 -10 585 266 34 23 chr9 130973021 130973198 -11298246 - HAL1 LINE L1 -1761 746 568 2469 84 0 3 chr9 130973213 130973521 -11297923 - AluY SINE Alu -4 307 1 645 243 0 0 chr9 130973541 130973681 -11297763 - HAL1 LINE L1 -2198 309 170 2402 94 0 0 chr9 130973805 130974102 -11297342 - AluSp SINE Alu -16 297 1 786 195 8 0 chr9 130975441 130975569 -11295875 + FLAM_A SINE Alu 1 129 -4 190 269 8 119 chr9 130975589 130975650 -11295794 + MIR3 SINE MIR 87 153 -55 910 175 139 10 chr9 130975650 130975844 -11295600 - MER20 DNA MER1_type 0 219 1 190 269 8 119 chr9 130975844 130975856 -11295588 + MIR3 SINE MIR 153 165 -43 2348 94 0 16 chr9 130975856 130976163 -11295281 - AluSq SINE Alu -11 302 1 190 269 8 119 chr9 130976163 130976222 -11295222 + MIR3 SINE MIR 165 205 -3 2252 92 3 0 chr9 130976475 130976798 -11294646 + AluSx SINE Alu 1 324 0 2433 100 0 3 chr9 130976916 130977227 -11294217 - AluSx SINE Alu -2 310 1 714 97 58 0 chr9 130977668 130977771 -11293673 - AluSp/q SINE Alu -17 296 188 1579 126 0 5 chr9 130977817 130978031 -11293413 - AluSx SINE Alu -99 213 1 2366 77 0 3 chr9 130978040 130978350 -11293094 - AluSp SINE Alu 0 309 1 715 139 87 0 chr9 130979058 130979173 -11292271 - FLAM_C SINE Alu -8 125 1 2849 191 29 48 chr9 130979228 130979522 -11291922 - L1MB8 LINE L1 -6 6172 5874 2334 80 3 0 chr9 130979522 130979809 -11291635 - AluY SINE Alu -23 288 1 2849 191 29 48 chr9 130979809 130980036 -11291408 - L1MB8 LINE L1 -304 5874 5664 2170 137 0 13 chr9 130980036 130980351 -11291093 - AluSx SINE Alu -1 311 1 2849 191 29 48 chr9 130980351 130980509 -11290935 - L1MB8 LINE L1 -514 5664 5505 400 327 12 12 chr9 130980639 130980804 -11290640 + MIR SINE MIR 95 259 -3 2118 129 14 0 chr9 130980855 130981149 -11290295 - AluSq SINE Alu -15 298 1 2432 82 13 0 chr9 130981168 130981471 -11289973 - AluSg SINE Alu 0 310 4 435 327 95 9 chr9 130981591 130981802 -11289642 + L2 LINE L2 3083 3311 -2 838 286 61 0 chr9 130981934 130982179 -11289265 - MIR SINE MIR 0 262 3 191 237 0 0 chr9 130982426 130982464 -11288980 + L3b LINE CR1 1535 1572 -11 262 303 70 0 chr9 130982643 130982785 -11288659 + L1MC4a LINE L1 5755 5906 -1902 1166 126 0 0 chr9 130983010 130983169 -11288275 + AluSp SINE Alu 137 295 -18 233 246 191 32 chr9 130983380 130983506 -11287938 + L3 LINE CR1 1226 1371 -206 1394 132 9 26 chr9 130983879 130984107 -11287337 - AluJb SINE Alu 0 312 89 2433 105 0 0 chr9 130984281 130984587 -11286857 - AluSx SINE Alu -6 306 1 437 252 105 76 chr9 130984717 130984864 -11286580 - MIR SINE MIR -14 248 92 2160 112 0 17 chr9 130984864 130985159 -11286285 + AluSx SINE Alu 7 296 -16 437 252 105 76 chr9 130985159 130985221 -11286223 - MIR SINE MIR -170 92 33 426 318 107 52 chr9 130986471 130986798 -11284646 + L1ME4a LINE L1 5380 5724 -397 1161 299 136 24 chr9 130986957 130987613 -11283831 + L2 LINE L2 1051 1779 -1535 1033 103 96 0 chr9 130987613 130987759 -11283685 - AluSg/x SINE Alu -19 293 134 2288 74 44 0 chr9 130987759 130988056 -11283388 - AluSg SINE Alu 0 310 1 294 205 239 26 chr9 130988058 130988175 -11283269 + L2 LINE L2 1769 1910 -1404 1058 284 179 28 chr9 130988225 130989124 -11282320 + L2 LINE L2 2216 3308 -5 403 237 34 0 chr9 130989140 130989258 -11282186 - L1ME4a LINE L1 -280 5841 5720 500 265 146 36 chr9 130989305 130989419 -11282025 + L1ME4a LINE L1 5791 5891 -230 1975 153 10 0 chr9 130989419 130989713 -11281731 - AluJb SINE Alu -15 297 1 500 265 146 36 chr9 130989713 130989811 -11281633 + L1ME4a LINE L1 5891 5977 -144 2248 111 0 16 chr9 130989811 130990127 -11281317 - AluSx SINE Alu -1 311 1 500 265 146 36 chr9 130990127 130990166 -11281278 + L1ME4a LINE L1 5977 6071 -50 2670 62 0 0 chr9 130990167 130990476 -11280968 - AluY SINE Alu -2 309 1 2302 112 0 0 chr9 130990477 130990772 -11280672 - AluSc SINE Alu -14 295 1 2316 110 0 19 chr9 130990807 130991117 -11280327 - AluSx SINE Alu -8 304 1 465 19 0 0 chr9 130991161 130991215 -11280229 + (TG)n Simple_repeat Simple_repeat 1 54 0 423 0 0 0 chr9 130991411 130991458 -11279986 + (TG)n Simple_repeat Simple_repeat 1 47 0 1334 179 67 32 chr9 130991647 130992058 -11279386 + Charlie1b DNA MER1_type 46 523 0 1711 87 114 101 chr9 130992081 130992379 -11279065 - AluSx SINE Alu -10 302 1 2009 132 41 0 chr9 130994045 130994375 -11277069 - AluSx SINE Alu 0 342 1 22 56 0 0 chr9 130994418 130994454 -11276990 + AT_rich Low_complexity Low_complexity 1 36 0 332 238 178 20 chr9 130994868 130994969 -11276475 + L2 LINE L2 3153 3269 -3 1266 322 59 11 chr9 130994972 130995631 -11275813 + L1ME3A LINE L1 5272 5962 -208 2430 167 6 3 chr9 130995876 130996600 -11274844 - L1MC/D LINE L1 -678 5655 4930 2125 112 7 0 chr9 130996673 130996976 -11274468 - AluSx SINE Alu 0 306 2 1970 144 0 32 chr9 130997033 130997345 -11274099 - AluSx SINE Alu -10 302 1 334 276 76 53 chr9 130997475 130997700 -11273744 - HAL1 LINE L1 -36 2471 2242 2279 120 7 0 chr9 130997755 130998063 -11273381 + AluSg SINE Alu 1 310 0 248 356 10 0 chr9 130998572 130998673 -11272771 + L3b LINE CR1 1131 1232 -351 2157 136 0 19 chr9 130998796 130999113 -11272331 - AluSx SINE Alu -1 311 1 2204 105 0 3 chr9 130999869 131000194 -11271250 - AluSx SINE Alu 0 324 1 1934 151 30 3 chr9 131000240 131000539 -11270905 - AluJo SINE Alu 0 312 6 2229 112 10 0 chr9 131001666 131001960 -11269484 + AluSx SINE Alu 1 297 -15 2457 96 0 3 chr9 131003220 131003532 -11267912 + AluY SINE Alu 1 311 0 827 280 156 17 chr9 131003669 131004072 -11267372 + L2 LINE L2 2852 3310 -3 184 184 0 26 chr9 131005997 131006035 -11265409 - MIR SINE MIR -23 239 203 384 147 27 0 chr9 131006469 131006544 -11264900 - MER81 DNA DNA -1 113 37 313 225 135 9 chr9 131006658 131006769 -11264675 - L1MD2 LINE L1 -181 6178 6054 318 240 27 0 chr9 131006769 131006844 -11264600 - MER81 DNA DNA -37 77 1 2288 109 0 10 chr9 131007326 131007628 -11263816 - AluSg SINE Alu -10 300 2 2398 89 0 3 chr9 131007640 131007943 -11263501 - AluSg SINE Alu -7 303 2 2346 105 0 0 chr9 131009802 131010097 -11261347 + AluSx SINE Alu 1 295 -17 269 241 207 0 chr9 131010259 131010346 -11261098 - Charlie7 DNA MER1_type -2507 105 1 2385 110 0 0 chr9 131010401 131010709 -11260735 - AluSx SINE Alu -4 308 1 2071 135 6 6 chr9 131011056 131011368 -11260076 - AluSx SINE Alu 0 312 1 2207 123 0 3 chr9 131011394 131011695 -11259749 + AluSg SINE Alu 1 300 -10 38 0 0 0 chr9 131011852 131011890 -11259554 + AT_rich Low_complexity Low_complexity 1 38 0 443 303 41 69 chr9 131011993 131012076 -11259368 + L2 LINE L2 2702 2786 -486 216 0 0 0 chr9 131012076 131012100 -11259344 + (CA)n Simple_repeat Simple_repeat 2 25 0 443 303 41 69 chr9 131012100 131012497 -11258947 + L2 LINE L2 2786 3272 0 1509 196 16 26 chr9 131013276 131013582 -11257862 - MLT1F1 LTR MaLR -262 305 3 2334 103 0 0 chr9 131013584 131013875 -11257569 + AluSx SINE Alu 1 291 -21 183 320 40 0 chr9 131014031 131014081 -11257363 + L2 LINE L2 3205 3256 -16 216 244 186 12 chr9 131014657 131014743 -11256701 + MIR SINE MIR 50 150 -112 2277 111 0 0 chr9 131014880 131015177 -11256267 + AluSg SINE Alu 1 297 -13 1988 107 64 7 chr9 131016143 131016424 -11255020 - AluJo SINE Alu -15 297 1 2848 19 0 0 chr9 131018511 131018819 -11252625 - AluY SINE Alu -3 308 1 2421 99 0 10 chr9 131018867 131019180 -11252264 - AluSx SINE Alu -2 310 1 21 36 0 0 chr9 131020417 131020445 -11250999 + AT_rich Low_complexity Low_complexity 1 28 0 184 275 25 0 chr9 131020923 131020963 -11250481 - L2 LINE L2 -21 3251 3211 836 246 42 45 chr9 131021283 131021539 -11249905 + L2 LINE L2 2729 2984 -329 2269 118 0 0 chr9 131021539 131021835 -11249609 + AluSx SINE Alu 1 296 -16 836 246 42 45 chr9 131021835 131021926 -11249518 + L2 LINE L2 2984 3074 -239 231 255 85 11 chr9 131021936 131022030 -11249414 + L1ME LINE L1 5694 5794 -372 247 318 65 44 chr9 131023711 131023851 -11247593 + MIR SINE MIR 14 154 -67 235 298 0 0 chr9 131025157 131025214 -11246230 + (TG)n Simple_repeat Simple_repeat 2 58 0 1126 153 12 0 chr9 131026288 131026458 -11244986 - FAM SINE Alu -3 172 1 27 0 0 0 chr9 131026557 131026584 -11244860 + AT_rich Low_complexity Low_complexity 1 27 0 2382 103 0 19 chr9 131026584 131026903 -11244541 - AluSp SINE Alu 0 313 1 245 296 86 43 chr9 131027164 131027350 -11244094 + MIR3 SINE MIR 14 207 -1 1996 154 3 6 chr9 131028246 131028558 -11242886 - AluJb SINE Alu -1 311 1 241 254 123 74 chr9 131029087 131029209 -11242235 + MIR3 SINE MIR 33 160 -48 235 240 60 40 chr9 131029211 131029311 -11242133 - MER5A DNA MER1_type 0 189 88 189 0 0 0 chr9 131031068 131031089 -11240355 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr9 131033468 131033491 -11237953 + AT_rich Low_complexity Low_complexity 1 23 0 1879 116 8 8 chr9 131033921 131034189 -11237255 - AluSx SINE Alu -1 311 44 299 196 37 5 chr9 131034715 131034794 -11236650 - MIR SINE MIR -59 149 98 1646 141 0 93 chr9 131034830 131035184 -11236260 - AluJb SINE Alu 0 325 1 261 311 67 0 chr9 131035841 131035931 -11235513 + MIR SINE MIR 10 105 -157 501 80 0 0 chr9 131036006 131036081 -11235363 + (ATG)n Simple_repeat Simple_repeat 3 77 0 325 311 52 24 chr9 131036111 131036323 -11235121 + L1ME3A LINE L1 5718 5935 -235 3175 72 23 2 chr9 131036323 131036751 -11234693 + LTR3b LTR ERVK 1 437 0 1994 135 14 0 chr9 131037008 131037297 -11234147 + AluJb SINE Alu 1 293 -19 903 241 49 0 chr9 131037303 131037506 -11233938 - MIR SINE MIR -22 240 28 2172 101 0 24 chr9 131037531 131037829 -11233615 + AluSx SINE Alu 3 293 -19 2296 107 0 3 chr9 131038330 131038629 -11232815 + AluSx SINE Alu 1 298 -14 659 212 72 14 chr9 131038850 131039072 -11232372 + L1M3 LINE L1 5098 5332 -814 711 156 0 57 chr9 131039075 131039216 -11232228 + FLAM_A SINE Alu 10 142 0 601 156 199 0 chr9 131039216 131039357 -11232087 + L1M3 LINE L1 5323 5491 -689 1803 141 49 14 chr9 131039357 131039641 -11231803 + AluJb SINE Alu 1 294 -18 483 165 10 21 chr9 131039655 131039752 -11231692 + LTR47A LTR ERVL 203 298 -154 1859 98 98 0 chr9 131039858 131040134 -11231310 - AluSx SINE Alu -9 303 1 308 108 446 0 chr9 131040530 131040604 -11230840 + U6 snRNA snRNA 1 107 0 394 209 194 8 chr9 131040759 131040893 -11230551 + MIR SINE MIR 5 163 -99 844 84 0 0 chr9 131040893 131041000 -11230444 + AluSq/x SINE Alu 43 149 -163 262 104 42 0 chr9 131041000 131041048 -11230396 + Alu SINE Alu 247 296 -6 5249 138 62 15 chr9 131041366 131042246 -11229198 + MER49 LTR ERV1 1 922 -1 243 0 0 0 chr9 131042382 131042409 -11229035 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 2124 101 7 10 chr9 131042583 131042881 -11228563 + AluSp SINE Alu 1 297 -16 1531 164 3 56 chr9 131042892 131043044 -11228400 + AluJo SINE Alu 1 129 -183 2463 67 0 0 chr9 131043044 131043343 -11228101 + AluY SINE Alu 1 299 -12 1531 164 3 56 chr9 131043343 131043513 -11227931 + AluJo SINE Alu 129 306 -6 2219 105 0 29 chr9 131043658 131043973 -11227471 - AluSx SINE Alu -6 306 1 722 115 142 0 chr9 131043973 131044121 -11227323 + LTR54 LTR ERV1 302 470 -40 1976 138 47 0 chr9 131044121 131044419 -11227025 + AluSx SINE Alu 1 312 0 246 128 0 0 chr9 131044419 131044458 -11226986 + (GA)n Simple_repeat Simple_repeat 1 39 0 995 280 74 53 chr9 131044492 131045021 -11226423 - L1M4b LINE L1 -6055 804 265 2039 115 13 16 chr9 131045175 131045487 -11225957 + AluSx SINE Alu 1 311 -1 927 186 52 11 chr9 131045500 131045740 -11225704 + LTR24B LTR ERV1 25 262 -314 1577 148 8 4 chr9 131045757 131046000 -11225444 - AluJo SINE Alu -68 244 1 230 282 154 18 chr9 131048537 131048647 -11222797 + MIR3 SINE MIR 71 195 -13 426 280 112 7 chr9 131048901 131049044 -11222400 - MIR SINE MIR -70 192 35 2176 95 0 0 chr9 131049149 131049434 -11222010 + AluSg SINE Alu 1 285 -25 32 0 0 0 chr9 131049434 131049466 -11221978 + AT_rich Low_complexity Low_complexity 1 32 0 198 274 192 0 chr9 131049596 131049669 -11221775 - L2 LINE L2 -4 3268 3182 608 189 78 61 chr9 131049887 131050067 -11221377 + MIR SINE MIR 9 191 -71 465 202 109 17 chr9 131050058 131050177 -11221267 - L2 LINE L2 -8 3305 3176 * 275 359 61 23 chr9 131050744 131050875 -11220569 - MIR SINE MIR -54 208 73 1919 140 0 35 chr9 131050942 131051257 -11220187 + AluJo SINE Alu 1 304 -8 345 241 75 4 chr9 131054177 131054294 -11217150 + MIR SINE MIR 18 145 -63 2354 103 0 0 chr9 131054446 131054758 -11216686 - AluSx SINE Alu 0 312 1 184 300 138 0 chr9 131055718 131055798 -11215646 - MIR SINE MIR -92 170 80 246 333 20 10 chr9 131056839 131056941 -11214503 + MIR SINE MIR 39 141 -67 275 323 50 0 chr9 131057988 131058087 -11213357 + MIR SINE MIR 43 146 -62 742 197 81 50 chr9 131058901 131059029 -11212415 + MER3 DNA MER1_type 1 139 -70 2054 126 10 3 chr9 131059029 131059339 -11212105 - AluSx SINE Alu 0 312 1 742 197 81 50 chr9 131059339 131059408 -11212036 + MER3 DNA MER1_type 139 204 -5 2024 137 10 0 chr9 131059548 131059841 -11211603 - AluSx SINE Alu -14 298 3 1122 67 0 0 chr9 131059882 131060017 -11211427 + AluSg SINE Alu 1 135 -175 367 371 35 45 chr9 131060119 131060321 -11211123 + L1MEd LINE L1 123 322 -5797 298 377 71 25 chr9 131060431 131060670 -11210774 + L1MEd LINE L1 386 635 -5484 251 319 0 9 chr9 131060680 131060796 -11210648 + L1MEd LINE L1 2249 2363 -3766 1418 234 25 0 chr9 131060796 131060916 -11210528 + AluJo SINE Alu 1 117 -195 543 31 0 0 chr9 131060916 131060981 -11210463 + (CTA)n Simple_repeat Simple_repeat 1 65 0 1418 234 25 0 chr9 131060981 131061146 -11210298 + AluJo SINE Alu 117 293 -19 1454 300 105 14 chr9 131061148 131061886 -11209558 - L2 LINE L2 -167 3146 2342 189 154 0 0 chr9 131062287 131062326 -11209118 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 1871 148 0 20 chr9 131062429 131062732 -11208712 + AluSx SINE Alu 1 297 -15 386 229 57 0 chr9 131062776 131062893 -11208551 + MIR SINE MIR 36 145 -63 2034 129 0 17 chr9 131063002 131063304 -11208140 - AluSx SINE Alu -15 297 1 189 154 0 0 chr9 131063407 131063446 -11207998 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 235 346 31 24 chr9 131064098 131064225 -11207219 - L2 LINE L2 -21 3292 3165 256 172 69 0 chr9 131064297 131064355 -11207089 + CT-rich Low_complexity Low_complexity 2 63 0 337 104 0 0 chr9 131064564 131064612 -11206832 + Alu SINE Alu 1 48 -252 588 157 47 12 chr9 131064715 131064887 -11206557 + CT-rich Low_complexity Low_complexity 2 179 0 235 302 0 0 chr9 131064889 131064942 -11206502 + polypyrimidine Low_complexity Low_complexity 4 56 0 1109 113 68 17 chr9 131065646 131065845 -11205599 - AluSg/x SINE Alu 0 302 95 337 158 3 3 chr9 131065849 131065925 -11205519 - AluJ/FLAM SINE Alu -243 59 2 391 302 113 19 chr9 131065949 131066161 -11205283 - MIR SINE MIR -18 244 13 2117 114 0 38 chr9 131066620 131066936 -11204508 + AluSx SINE Alu 1 304 -8 293 279 23 0 chr9 131067303 131067389 -11204055 + MIR SINE MIR 48 135 -73 230 219 0 0 chr9 131068396 131068437 -11203007 + polypurine Low_complexity Low_complexity 2 42 0 1646 128 60 36 chr9 131068948 131069229 -11202215 + AluSx SINE Alu 4 291 -21 2588 43 0 0 chr9 131069229 131069533 -11201911 + AluY SINE Alu 1 304 -7 2193 112 0 0 chr9 131069552 131069846 -11201598 - AluSx SINE Alu -18 294 1 2280 112 0 0 chr9 131070452 131070764 -11200680 + AluSx SINE Alu 1 312 0 221 216 0 0 chr9 131071376 131071413 -11200031 + polypurine Low_complexity Low_complexity 2 38 0 1615 115 138 8 chr9 131071711 131071971 -11199473 - AluSx SINE Alu -8 294 1 654 249 49 29 chr9 131072007 131072252 -11199192 - L1ME3A LINE L1 -5 6165 5916 319 348 8 25 chr9 131072260 131072378 -11199066 - L1ME3A LINE L1 -304 5860 5745 1987 158 0 10 chr9 131072459 131072770 -11198674 + AluJb SINE Alu 1 308 -4 374 296 9 9 chr9 131072994 131073109 -11198335 + MIR SINE MIR 29 143 -119 200 259 185 0 chr9 131074044 131074125 -11197319 - L2 LINE L2 -8 3264 3169 301 296 17 77 chr9 131076818 131077057 -11194387 - MIR SINE MIR -23 239 22 451 273 78 19 chr9 131077601 131077755 -11193689 - MIR3 SINE MIR -29 179 17 192 182 45 0 chr9 131077992 131078036 -11193408 - MIR SINE MIR -63 199 154 482 255 85 28 chr9 131079838 131079979 -11191465 - MIR SINE MIR -88 174 26 279 0 0 0 chr9 131080205 131080236 -11191208 + (CA)n Simple_repeat Simple_repeat 1 31 0 1055 82 0 2 chr9 131080284 131080480 -11190964 + AluSq SINE Alu 1 229 -84 310 376 132 4 chr9 131080520 131080708 -11190736 + HAL1 LINE L1 1011 1240 -1267 2517 68 0 0 chr9 131080708 131081016 -11190428 + AluSc SINE Alu 1 308 -1 310 376 132 4 chr9 131081016 131081077 -11190367 + HAL1 LINE L1 1240 1292 -1215 253 313 157 18 chr9 131081102 131081268 -11190176 + MIR3 SINE MIR 19 207 -1 400 295 94 13 chr9 131081329 131081464 -11189980 + L2 LINE L2 3111 3260 -12 2510 123 93 29 chr9 131081464 131081550 -11189894 + MER83 LTR ERV1 1 80 -368 2527 62 0 0 chr9 131081550 131081854 -11189590 - AluY SINE Alu -7 304 1 2510 123 93 29 chr9 131081854 131082188 -11189256 + MER83 LTR ERV1 80 448 0 400 295 94 13 chr9 131082188 131082201 -11189243 + L2 LINE L2 3260 3271 -1 337 282 83 32 chr9 131083030 131083174 -11188270 + L1ME4a LINE L1 5955 6109 -12 2278 93 6 6 chr9 131083174 131083485 -11187959 + AluSx SINE Alu 1 311 -1 337 282 83 32 chr9 131083485 131083496 -11187948 + L1ME4a LINE L1 6109 6118 -3 411 239 15 46 chr9 131084487 131084617 -11186827 - MIR SINE MIR -118 144 19 2239 107 0 3 chr9 131084617 131084927 -11186517 - AluY SINE Alu -2 309 1 631 318 74 5 chr9 131084963 131085175 -11186269 + MIR SINE MIR 31 258 0 2341 78 10 3 chr9 131085175 131085483 -11185961 - AluSg SINE Alu 0 310 1 275 256 0 0 chr9 131085515 131085581 -11185863 - MIR SINE MIR -64 144 87 2289 73 0 3 chr9 131086156 131086483 -11184961 - AluSx SINE Alu 0 312 1 382 261 58 37 chr9 131087007 131087157 -11184287 + MIR SINE MIR 39 192 -16 2325 97 0 0 chr9 131087167 131087478 -11183966 + AluSx SINE Alu 1 311 -1 254 268 206 0 chr9 131087513 131087610 -11183834 - MIR SINE MIR -69 139 23 2232 77 17 0 chr9 131088019 131088316 -11183128 - AluSq SINE Alu -11 302 1 319 294 0 20 chr9 131088316 131088418 -11183026 - MIR SINE MIR -68 140 41 1329 154 23 114 chr9 131089398 131089741 -11181703 - AluJo SINE Alu 0 312 1 767 257 64 0 chr9 131089840 131090042 -11181402 - MIR SINE MIR -9 253 39 447 119 0 0 chr9 131090394 131090461 -11180983 + L1MC1 LINE L1 6267 6333 0 2025 107 18 1 chr9 131090467 131090891 -11180553 + AluSq SINE Alu 1 296 -17 333 319 110 37 chr9 131091302 131091465 -11179979 - MIR3 SINE MIR -16 192 18 2018 123 3 22 chr9 131091468 131091786 -11179658 - AluSx SINE Alu 0 312 1 371 274 11 0 chr9 131091987 131092082 -11179362 - MER91A DNA MER1_type -11 185 90 392 366 149 9 chr9 131092411 131092632 -11178812 + MIR SINE MIR 10 261 -1 398 256 47 23 chr9 131092877 131093006 -11178438 - MIR3 SINE MIR -68 140 9 332 313 108 73 chr9 131093976 131094087 -11177357 + L2 LINE L2 2888 2994 -278 1920 114 33 0 chr9 131094087 131094401 -11177043 - AluSx SINE Alu 0 323 1 332 313 108 73 chr9 131094401 131094659 -11176785 + L2 LINE L2 2994 3271 -1 538 258 216 6 chr9 131094843 131095010 -11176434 - MIR SINE MIR -33 229 28 232 282 50 108 chr9 131095416 131095675 -11175769 - L2 LINE L2 -4 3268 3025 328 304 36 18 chr9 131096187 131096299 -11175145 + MIR SINE MIR 105 218 -44 232 309 162 40 chr9 131096734 131097012 -11174432 - L2 LINE L2 -123 3149 2838 189 305 151 29 chr9 131097225 131097464 -11173980 - L2 LINE L2 -810 2504 2237 358 260 175 19 chr9 131097780 131097934 -11173510 + MIR3 SINE MIR 6 183 -25 213 195 0 0 chr9 131098884 131098925 -11172519 + (CCCGG)n Simple_repeat Simple_repeat 5 45 0 29 78 0 0 chr9 131098957 131099021 -11172423 + GC_rich Low_complexity Low_complexity 1 64 0 347 350 124 8 chr9 131099698 131099932 -11171512 + MIR SINE MIR 2 262 0 2115 125 3 7 chr9 131099965 131100269 -11171175 + AluSx SINE Alu 1 303 -9 253 228 29 77 chr9 131100334 131100432 -11171012 + MIR SINE MIR 37 140 -68 2164 65 45 3 chr9 131100587 131100878 -11170566 - AluY SINE Alu -8 303 1 1564 136 77 45 chr9 131100880 131101167 -11170277 - AluSq SINE Alu -17 296 1 1298 152 21 130 chr9 131101219 131101549 -11169895 - AluJb SINE Alu -16 296 3 243 0 0 0 chr9 131101549 131101576 -11169868 + (ATG)n Simple_repeat Simple_repeat 1 27 0 1994 113 0 24 chr9 131101576 131101900 -11169544 - AluSx SINE Alu 0 317 1 663 93 22 158 chr9 131101903 131102042 -11169402 - AluSq/x SINE Alu -179 133 14 850 156 7 14 chr9 131102069 131102210 -11169234 - AluJo SINE Alu -170 142 3 204 277 0 0 chr9 131102704 131102751 -11168693 + L2 LINE L2 3012 3058 -214 232 339 77 0 chr9 131102977 131103107 -11168337 - MIR SINE MIR -70 192 53 2166 116 0 0 chr9 131103154 131103455 -11167989 - AluSx SINE Alu -11 301 1 1086 175 29 79 chr9 131103507 131103641 -11167803 + AluJo SINE Alu 2 120 -192 2409 71 0 0 chr9 131103641 131103937 -11167507 + AluY SINE Alu 1 296 -15 1086 175 29 79 chr9 131103937 131104042 -11167402 + AluJo SINE Alu 120 229 -83 26 0 0 0 chr9 131104073 131104099 -11167345 + AT_rich Low_complexity Low_complexity 1 26 0 181 360 20 10 chr9 131104158 131104258 -11167186 + L2 LINE L2 3146 3246 -26 274 136 0 0 chr9 131104337 131104381 -11167063 - MADE1 DNA Mariner 0 80 37 1185 64 0 53 chr9 131104384 131104555 -11166889 + L1PA7 LINE L1 5993 6154 0 347 285 30 110 chr9 131104562 131104762 -11166682 + MIR SINE MIR 79 262 0 1980 88 0 8 chr9 131104818 131105080 -11166364 - AluSx SINE Alu -52 260 1 464 354 12 0 chr9 131105737 131105901 -11165543 + MIR SINE MIR 60 225 -37 336 259 96 35 chr9 131105898 131106095 -11165349 + L2 LINE L2 1989 2197 -1117 * 892 308 125 13 chr9 131106242 131106794 -11164650 + L2 LINE L2 2187 2800 -514 919 255 114 42 chr9 131106894 131107367 -11164077 + L2 LINE L2 2794 3304 -9 636 160 0 0 chr9 131107368 131107462 -11163982 + AluSq SINE Alu 129 222 -91 192 212 0 0 chr9 131107576 131107609 -11163835 + MIR SINE MIR 117 149 -59 699 252 219 11 chr9 131108255 131108629 -11162815 + L2 LINE L2 2567 3001 -312 2095 92 0 11 chr9 131108636 131108950 -11162494 - AluSx SINE Alu 0 311 1 825 196 13 0 chr9 131108956 131109109 -11162335 - AluJb SINE Alu -18 294 140 582 285 142 7 chr9 131109113 131109387 -11162057 + L2 LINE L2 3003 3313 0 443 280 28 62 chr9 131109392 131109671 -11161773 + L2 LINE L2 2785 3051 -221 314 244 37 0 chr9 131110291 131110373 -11161071 + MIR SINE MIR 108 192 -70 2110 117 3 0 chr9 131110482 131110808 -11160636 - AluSx SINE Alu 0 312 1 271 250 250 10 chr9 131111283 131111383 -11160061 - MIR SINE MIR -62 146 23 243 241 69 0 chr9 131111573 131111631 -11159813 + MIR SINE MIR 84 145 -63 607 305 45 0 chr9 131111640 131111817 -11159627 - MIR SINE MIR -14 248 64 773 89 0 0 chr9 131112306 131112407 -11159037 - AluS SINE Alu -212 101 1 630 107 0 121 chr9 131112409 131112549 -11158895 + FRAM SINE Alu 1 40 0 2160 122 3 0 chr9 131112832 131113135 -11158309 + AluSx SINE Alu 1 304 -8 732 306 24 65 chr9 131113197 131113661 -11157783 - L1MC4a LINE L1 -1765 6043 5599 2265 98 0 0 chr9 131113664 131113961 -11157483 - AluSx SINE Alu -15 297 1 394 284 251 0 chr9 131113985 131114168 -11157276 - MIR SINE MIR -25 237 9 313 310 190 0 chr9 131114465 131114623 -11156821 - L1MC4a LINE L1 -713 5457 5270 1162 158 29 75 chr9 131114624 131114758 -11156686 + AluJb SINE Alu 1 121 -191 1213 217 50 0 chr9 131114758 131114816 -11156628 + AluY SINE Alu 2 56 -255 1682 147 0 0 chr9 131114816 131115068 -11156376 - AluSg SINE Alu -13 297 46 1213 217 50 0 chr9 131115068 131115290 -11156154 + AluY SINE Alu 56 296 -15 1162 158 29 75 chr9 131115290 131115395 -11156049 + AluJb SINE Alu 121 229 -83 26 0 0 0 chr9 131115426 131115452 -11155992 + AT_rich Low_complexity Low_complexity 1 26 0 181 360 20 10 chr9 131115511 131115611 -11155833 + L2 LINE L2 3146 3246 -26 274 136 0 0 chr9 131115690 131115734 -11155710 - MADE1 DNA Mariner 0 80 37 1185 64 0 53 chr9 131115737 131115908 -11155536 + L1PA7 LINE L1 5993 6154 0 347 285 30 110 chr9 131115915 131116115 -11155329 + MIR SINE MIR 79 262 0 1980 88 0 8 chr9 131116171 131116433 -11155011 - AluSx SINE Alu -52 260 1 464 354 12 0 chr9 131117090 131117254 -11154190 + MIR SINE MIR 60 225 -37 369 274 91 30 chr9 131117251 131117448 -11153996 + L2 LINE L2 1989 2197 -1117 * 730 305 106 19 chr9 131117726 131118208 -11153236 + L2 LINE L2 2277 2800 -514 919 255 114 42 chr9 131118308 131118781 -11152663 + L2 LINE L2 2794 3304 -9 636 160 0 0 chr9 131118782 131118876 -11152568 + AluSq SINE Alu 129 222 -91 192 212 0 0 chr9 131118990 131119023 -11152421 + MIR SINE MIR 117 149 -59 709 250 219 11 chr9 131119669 131120043 -11151401 + L2 LINE L2 2567 3001 -312 2106 88 0 11 chr9 131120050 131120364 -11151080 - AluSx SINE Alu 0 311 1 825 196 13 0 chr9 131120370 131120523 -11150921 - AluJb SINE Alu -18 294 140 540 287 142 11 chr9 131120527 131120802 -11150642 + L2 LINE L2 3003 3313 0 454 276 16 72 chr9 131120807 131121086 -11150358 + L2 LINE L2 2785 3051 -221 314 244 37 0 chr9 131121705 131121787 -11149657 + MIR SINE MIR 108 192 -70 2110 117 3 0 chr9 131121896 131122222 -11149222 - AluSx SINE Alu 0 312 1 271 250 250 10 chr9 131122697 131122797 -11148647 - MIR SINE MIR -62 146 23 243 241 69 0 chr9 131122987 131123045 -11148399 + MIR SINE MIR 84 145 -63 607 305 45 0 chr9 131123054 131123231 -11148213 - MIR SINE MIR -14 248 64 567 183 0 10 chr9 131123860 131123964 -11147480 + FRAM SINE Alu 69 171 -5 1033 295 63 27 chr9 131123973 131124569 -11146875 + L2 LINE L2 2688 3296 -17 213 276 13 26 chr9 131124586 131124662 -11146782 + MIR SINE MIR 70 144 -118 2329 83 0 40 chr9 131124714 131125040 -11146404 + AluSp SINE Alu 1 313 0 474 355 39 5 chr9 131125081 131125284 -11146160 + MIR SINE MIR 3 212 -50 202 347 74 0 chr9 131125758 131125853 -11145591 - MIR3 SINE MIR -25 183 82 582 264 141 0 chr9 131126216 131126379 -11145065 + MIR SINE MIR 17 202 -60 249 108 0 0 chr9 131126966 131127003 -11144441 + (CCCCG)n Simple_repeat Simple_repeat 3 39 0 711 238 48 5 chr9 131127225 131127414 -11144030 - MIR SINE MIR -12 250 54 2121 84 0 62 chr9 131127593 131127913 -11143531 - AluSg SINE Alu -10 300 1 265 210 303 34 chr9 131128065 131128184 -11143260 + MIR SINE MIR 3 153 -109 1788 138 80 0 chr9 131128188 131128463 -11142981 - AluSg SINE Alu -13 297 1 493 330 71 21 chr9 131128738 131128977 -11142467 + MIR SINE MIR 12 262 0 2057 104 0 0 chr9 131129019 131129299 -11142145 + AluSx SINE Alu 31 310 -2 721 262 24 48 chr9 131129973 131130161 -11141283 + MIR SINE MIR 13 195 -67 2359 87 7 0 chr9 131130161 131130470 -11140974 + AluSq SINE Alu 1 311 -2 721 262 24 48 chr9 131130470 131130529 -11140915 + MIR SINE MIR 195 254 -8 1378 171 4 21 chr9 131130565 131130701 -11140743 + AluJo SINE Alu 1 133 -179 2068 110 10 3 chr9 131130701 131131013 -11140431 + AluSx SINE Alu 1 312 0 1378 171 4 21 chr9 131131013 131131115 -11140329 + AluJo SINE Alu 133 235 -77 422 218 0 0 chr9 131131226 131131304 -11140140 + AluJo SINE Alu 217 294 -18 2262 114 0 0 chr9 131131304 131131611 -11139833 - AluSx SINE Alu -5 307 1 23 0 0 0 chr9 131131613 131131636 -11139808 + AT_rich Low_complexity Low_complexity 1 23 0 324 276 105 0 chr9 131131673 131131778 -11139666 - MIR SINE MIR -77 185 70 361 281 4 4 chr9 131132165 131132292 -11139152 - MIR SINE MIR -61 147 22 237 285 154 15 chr9 131132488 131132618 -11138826 + MIR SINE MIR 6 153 -109 1058 148 31 127 chr9 131133361 131133460 -11137984 + AluJb SINE Alu 49 156 -156 2168 99 3 13 chr9 131133460 131133773 -11137671 - AluSx SINE Alu -2 310 1 1058 148 31 127 chr9 131133773 131133964 -11137480 + AluJb SINE Alu 156 311 -1 201 238 24 36 chr9 131133966 131134050 -11137394 + (CAGAGA)n Simple_repeat Simple_repeat 5 87 0 358 266 12 87 chr9 131134769 131134956 -11136488 - MIR3 SINE MIR -45 163 2 188 231 19 19 chr9 131135092 131135144 -11136300 + MIR SINE MIR 98 149 -113 2109 81 17 20 chr9 131135292 131135589 -11135855 + AluSx SINE Alu 5 300 -12 517 304 7 0 chr9 131135743 131135881 -11135563 + MIR SINE MIR 61 199 -63 1844 104 8 19 chr9 131136607 131136875 -11134569 - AluSx SINE Alu -47 265 1 305 229 39 54 chr9 131137038 131137181 -11134263 + MIR SINE MIR 57 204 -58 590 341 15 10 chr9 131137357 131137562 -11133882 + MIR SINE MIR 1 206 -56 1825 94 17 54 chr9 131137628 131137925 -11133519 - AluSq SINE Alu -27 286 1 357 24 0 0 chr9 131137926 131137968 -11133476 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1861 130 15 0 chr9 131137968 131138238 -11133206 - AluSx SINE Alu -30 282 9 460 291 118 10 chr9 131139057 131139260 -11132184 + MIR SINE MIR 38 262 0 2126 85 7 0 chr9 131139568 131139850 -11131594 - AluSg SINE Alu -22 288 5 475 284 171 14 chr9 131140315 131140537 -11130907 + MIR SINE MIR 6 262 0 30 0 0 0 chr9 131142742 131142772 -11128672 + AT_rich Low_complexity Low_complexity 1 30 0 2071 116 20 0 chr9 131143466 131143759 -11127685 - AluSx SINE Alu -13 299 1 1241 191 162 12 chr9 131143780 131144020 -11127424 - MLT1C LTR MaLR 0 467 264 2365 81 0 0 chr9 131144020 131144317 -11127127 - AluSq SINE Alu -16 297 1 1241 191 162 12 chr9 131144317 131144478 -11126966 - MLT1C LTR MaLR -203 264 6 874 179 24 6 chr9 131144500 131144668 -11126776 + AluSg/x SINE Alu 129 299 -11 352 124 2 0 chr9 131144668 131144757 -11126687 + AluSp SINE Alu 132 202 -101 292 272 19 10 chr9 131145111 131145214 -11126230 + AluSc SINE Alu 193 296 -3 1931 117 35 3 chr9 131145220 131145510 -11125934 + AluSx SINE Alu 1 299 -13 268 164 0 33 chr9 131145608 131145669 -11125775 + L1ME LINE L1 5589 5647 -474 194 361 76 17 chr9 131145735 131145854 -11125590 - L2 LINE L2 0 3313 3188 848 121 0 8 chr9 131146128 131146252 -11125192 - FLAM_C SINE Alu -10 123 1 199 214 214 14 chr9 131146452 131146522 -11124922 + L2 LINE L2 3191 3274 -39 196 211 26 0 chr9 131146519 131146557 -11124887 + L2 LINE L2 3198 3236 -36 * 1129 122 0 6 chr9 131146930 131147102 -11124342 - AluSg/x SINE Alu -7 305 135 2222 112 0 0 chr9 131148020 131148325 -11123119 + AluSg SINE Alu 1 305 -5 1121 133 0 0 chr9 131148325 131148490 -11122954 + AluSg/x SINE Alu 138 302 -10 2461 65 3 0 chr9 131148490 131148800 -11122644 + AluY SINE Alu 1 311 0 260 200 11 111 chr9 131148803 131148893 -11122551 - MIR SINE MIR -62 146 66 2276 97 0 0 chr9 131150922 131151220 -11120224 - AluSx SINE Alu -14 298 1 848 226 0 6 chr9 131151299 131151458 -11119986 + AluJb SINE Alu 142 299 -13 860 163 0 15 chr9 131151513 131151648 -11119796 + FLAM_C SINE Alu 1 133 0 1016 95 0 15 chr9 131152118 131152255 -11119189 + AluSq/x SINE Alu 1 135 -177 2160 123 0 0 chr9 131152255 131152556 -11118888 + AluSx SINE Alu 1 301 -11 241 266 202 32 chr9 131153727 131153851 -11117593 + MIR3 SINE MIR 3 147 -61 2043 148 0 7 chr9 131153853 131154157 -11117287 + AluSx SINE Alu 1 302 -10 244 232 29 14 chr9 131154395 131154464 -11116980 + MIR3 SINE MIR 92 161 -47 180 0 0 0 chr9 131154978 131154998 -11116446 + (T)n Simple_repeat Simple_repeat 1 20 0 378 324 44 0 chr9 131155074 131155210 -11116234 + MIR SINE MIR 86 227 -35 235 317 21 0 chr9 131155860 131156002 -11115442 + G-rich Low_complexity Low_complexity 4 148 0 288 365 88 18 chr9 131156370 131156540 -11114904 + MIR SINE MIR 11 192 -70 236 229 180 0 chr9 131156576 131156637 -11114807 - MIR3 SINE MIR -19 189 118 213 261 136 11 chr9 131156678 131156766 -11114678 + MIR SINE MIR 46 144 -118 635 141 0 70 chr9 131157199 131157228 -11114216 - AluSg/x SINE Alu 0 312 283 2277 64 7 17 chr9 131157228 131157526 -11113918 + AluY SINE Alu 1 295 -16 635 141 0 70 chr9 131157526 131157624 -11113820 - AluSg/x SINE Alu -29 283 194 667 199 0 30 chr9 131157738 131157904 -11113540 - MER112 DNA MER1_type -92 168 8 1396 152 99 57 chr9 131157927 131158210 -11113234 + AluJb SINE Alu 1 295 -17 1115 103 11 51 chr9 131158258 131158433 -11113011 - AluSg/x SINE Alu -11 301 134 1932 109 0 76 chr9 131158433 131158762 -11112682 - AluSx SINE Alu -8 304 1 342 198 247 9 chr9 131158877 131159001 -11112443 + MIR SINE MIR 9 162 -46 282 313 25 0 chr9 131160095 131160175 -11111269 + MIR3 SINE MIR 78 159 -49 337 270 167 73 chr9 131160184 131160299 -11111145 - MIR SINE MIR -24 238 135 2215 63 3 33 chr9 131160299 131160599 -11110845 + AluSc SINE Alu 1 291 -18 337 270 167 73 chr9 131160599 131160687 -11110757 - MIR SINE MIR -127 135 16 206 200 0 0 chr9 131161743 131161778 -11109666 + G-rich Low_complexity Low_complexity 2 36 0 206 318 117 39 chr9 131162257 131162411 -11109033 + MIR3 SINE MIR 21 186 -22 208 297 109 0 chr9 131163294 131163358 -11108086 + MIR SINE MIR 30 100 -162 315 191 0 0 chr9 131163831 131163899 -11107545 + (TGGA)n Simple_repeat Simple_repeat 1 68 0 2478 57 0 0 chr9 131164945 131165245 -11106199 - AluY SINE Alu -11 300 1 375 310 121 6 chr9 131165261 131165435 -11106009 - MIR SINE MIR -6 256 63 269 310 0 35 chr9 131165677 131165764 -11105680 - MIR3 SINE MIR -5 203 120 1198 115 33 6 chr9 131166214 131166396 -11105048 - AluSq SINE Alu -19 294 108 2433 54 0 3 chr9 131166544 131166838 -11104606 + AluY SINE Alu 1 293 -18 632 176 271 41 chr9 131166977 131167147 -11104297 + Tigger3(Golem) DNA MER2_type 3 211 -2818 1898 151 3 0 chr9 131167147 131167445 -11103999 + AluSx SINE Alu 1 299 -13 1872 94 7 94 chr9 131167445 131167609 -11103835 + AluSx SINE Alu 1 125 -185 2060 89 7 24 chr9 131167609 131167901 -11103543 + AluSg SINE Alu 17 303 -7 1872 94 7 94 chr9 131167901 131168073 -11103371 + AluSx SINE Alu 125 310 0 692 302 143 24 chr9 131168226 131168819 -11102625 + L1ME4a LINE L1 5383 6046 -75 2057 127 3 0 chr9 131168838 131169137 -11102307 - AluSx SINE Alu -12 300 1 1306 91 6 0 chr9 131169145 131169321 -11102123 - AluY SINE Alu -13 298 122 2261 69 0 0 chr9 131169388 131169665 -11101779 - AluY SINE Alu -14 297 21 2184 124 3 0 chr9 131169671 131169978 -11101466 - AluSx SINE Alu -4 308 1 480 290 58 19 chr9 131170054 131170209 -11101235 - MIR SINE MIR -9 253 93 885 98 0 0 chr9 131170510 131170632 -11100812 - AluSg/x SINE Alu -6 303 182 405 182 23 11 chr9 131170634 131170722 -11100722 - MIR SINE MIR -93 169 81 212 83 0 28 chr9 131170754 131170790 -11100654 + (GGGAA)n Simple_repeat Simple_repeat 4 38 0 232 271 120 15 chr9 131171043 131171176 -11100268 + L2 LINE L2 2907 3053 -219 217 51 51 0 chr9 131171564 131171603 -11099841 + (CTGGGG)n Simple_repeat Simple_repeat 5 45 0 200 244 22 0 chr9 131172096 131172141 -11099303 + L2 LINE L2 3255 3300 -13 735 113 0 120 chr9 131172693 131172777 -11098667 - FLAM_C SINE Alu -170 132 72 2211 87 3 10 chr9 131172777 131173087 -11098357 + AluSq SINE Alu 1 308 -5 735 113 0 120 chr9 131173087 131173152 -11098292 - FLAM_C SINE Alu -230 72 1 259 262 35 57 chr9 131174251 131174392 -11097052 - L1ME4a LINE L1 -63 6058 5921 180 383 18 42 chr9 131174396 131174563 -11096881 - MIR3 SINE MIR -28 180 18 2140 123 0 0 chr9 131175102 131175403 -11096041 + AluSx SINE Alu 1 301 -11 2262 110 0 13 chr9 131175403 131175720 -11095724 + AluSq SINE Alu 1 313 0 373 198 35 0 chr9 131176116 131176202 -11095242 - MIR SINE MIR -21 241 153 1538 115 0 5 chr9 131176202 131176420 -11095024 - AluSg/x SINE Alu -11 299 83 2238 101 3 0 chr9 131176421 131176727 -11094717 - AluSg SINE Alu -3 307 1 1569 129 0 5 chr9 131176727 131176951 -11094493 - AluSg/x SINE Alu -5 305 83 911 204 0 0 chr9 131176952 131177109 -11094335 - AluJb SINE Alu -11 301 145 2310 101 3 0 chr9 131177109 131177417 -11094027 - AluSx SINE Alu -3 309 1 436 240 25 25 chr9 131177417 131177538 -11093906 - MIR SINE MIR -106 156 36 339 109 0 0 chr9 131177561 131177616 -11093828 - AluSp/q SINE Alu -5 298 244 244 105 0 0 chr9 131177607 131177645 -11093799 + Alu SINE Alu 74 111 -192 * 554 94 0 0 chr9 131177680 131177765 -11093679 - HY3 scRNA scRNA -2 99 15 2276 108 3 0 chr9 131177792 131178099 -11093345 - AluSx SINE Alu -4 308 1 2351 87 3 3 chr9 131178282 131178591 -11092853 + AluSp SINE Alu 1 309 -4 556 83 0 0 chr9 131178996 131179080 -11092364 - HY3 scRNA scRNA -2 99 16 1455 166 12 98 chr9 131179108 131179445 -11091999 - AluJo SINE Alu -4 308 1 2050 124 17 0 chr9 131179447 131179745 -11091699 - AluSg SINE Alu -7 303 1 919 114 8 0 chr9 131179745 131179876 -11091568 - AluSc SINE Alu -175 134 3 23 0 0 0 chr9 131179885 131179908 -11091536 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr9 131180028 131180050 -11091394 + AT_rich Low_complexity Low_complexity 1 22 0 2000 141 10 0 chr9 131180050 131180340 -11091104 - AluJb SINE Alu -18 294 2 280 79 0 0 chr9 131180730 131180768 -11090676 + MIR SINE MIR 111 148 -114 448 263 115 7 chr9 131181617 131181816 -11089628 + MIR SINE MIR 3 227 -35 2100 113 3 3 chr9 131181839 131182130 -11089314 - AluSx SINE Alu -21 291 1 233 290 16 16 chr9 131182288 131182350 -11089094 + MIR3 SINE MIR 111 172 -36 450 96 0 0 chr9 131182786 131182859 -11088585 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 288 226 0 0 chr9 131182979 131183032 -11088412 - MER115 DNA AcHobo 0 693 641 * 1154 267 67 16 chr9 131183027 131183462 -11087982 - MER115 DNA AcHobo -236 457 1 2251 113 0 0 chr9 131184589 131184898 -11086546 - AluSx SINE Alu -3 309 1 481 378 54 17 chr9 131185039 131185280 -11086164 - MIR SINE MIR 0 262 13 1392 107 11 0 chr9 131185356 131185543 -11085901 + AluSq SINE Alu 1 189 -124 211 27 27 27 chr9 131185545 131185582 -11085862 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 404 176 0 0 chr9 131186192 131186260 -11085184 - 5S rRNA rRNA -50 71 4 458 220 31 105 chr9 131186902 131187093 -11084351 + MIR SINE MIR 86 262 0 1413 97 0 10 chr9 131187257 131187452 -11083992 - AluSg/x SINE Alu 0 310 118 2249 107 0 3 chr9 131187457 131187765 -11083679 - AluSc SINE Alu -2 307 1 223 407 11 0 chr9 131187766 131187857 -11083587 + L3 LINE CR1 1371 1462 -115 405 324 29 35 chr9 131188345 131188518 -11082926 - MIR SINE MIR -29 233 62 698 138 21 21 chr9 131188527 131188672 -11082772 + MER53 DNA DNA 30 174 -15 392 293 6 46 chr9 131188672 131188802 -11082642 - L1MC4 LINE L1 -1341 6981 6847 2412 83 3 0 chr9 131188802 131189114 -11082330 - AluSp SINE Alu 0 313 1 392 293 6 46 chr9 131189114 131189135 -11082309 - L1MC4 LINE L1 -1475 6847 1977 21 0 0 0 chr9 131189135 131189156 -11082288 + AT_rich Low_complexity Low_complexity 1 21 0 2280 112 0 3 chr9 131189156 131189470 -11081974 - AluSp SINE Alu 0 313 1 1963 133 7 20 chr9 131189472 131189772 -11081672 - AluJb SINE Alu -16 296 1 492 311 44 27 chr9 131190538 131190721 -11080723 + MIR SINE MIR 7 192 -70 1933 138 0 13 chr9 131190737 131191041 -11080403 - AluJo SINE Alu -2 310 11 336 353 38 0 chr9 131191311 131191444 -11080000 - MIR3 SINE MIR -32 176 39 506 246 22 8 chr9 131191995 131192129 -11079315 + MIR SINE MIR 15 150 -112 727 218 5 62 chr9 131192163 131192356 -11079088 - MIR SINE MIR -48 214 33 1474 169 32 0 chr9 131192508 131192757 -11078687 - AluJb SINE Alu -19 293 37 369 336 136 30 chr9 131192977 131193212 -11078232 + MIR SINE MIR 2 261 -1 206 314 128 84 chr9 131193248 131193332 -11078112 + L2 LINE L2 2893 2972 -300 1633 173 24 10 chr9 131193332 131193627 -11077817 - AluJo SINE Alu -13 299 1 206 314 128 84 chr9 131193627 131193816 -11077628 + L2 LINE L2 2972 3178 -94 2825 106 60 60 chr9 131193884 131194432 -11077012 + LTR10A LTR ERV1 8 555 -54 298 336 0 60 chr9 131194475 131194624 -11076820 + MIR3 SINE MIR 63 202 -6 692 295 9 49 chr9 131194825 131195049 -11076395 + MIR SINE MIR 47 261 -1 210 125 0 0 chr9 131195299 131195331 -11076113 + MIR SINE MIR 117 148 -114 292 283 22 22 chr9 131195833 131195971 -11075473 + L1ME LINE L1 5648 5785 -336 1291 128 0 0 chr9 131196259 131196446 -11074998 - AluSg/x SINE Alu -8 302 116 1638 158 15 4 chr9 131196449 131196742 -11074702 + AluSx SINE Alu 13 308 0 27 35 0 0 chr9 131196964 131196993 -11074451 + AT_rich Low_complexity Low_complexity 1 29 0 2063 94 10 13 chr9 131197171 131197469 -11073975 + AluSg SINE Alu 1 297 -13 296 275 101 14 chr9 131197611 131197749 -11073695 - L1MC4a LINE L1 -1932 5876 5727 183 294 70 42 chr9 131197920 131198063 -11073381 + MIR3 SINE MIR 42 188 -20 554 299 74 0 chr9 131198168 131198385 -11073059 - MER63 DNA MER1_type -144 917 685 371 238 162 25 chr9 131198527 131198667 -11072777 + MIR SINE MIR 43 194 -62 212 304 73 62 chr9 131199345 131199566 -11071878 - MIR3 SINE MIR -18 190 23 396 248 119 0 chr9 131199635 131199736 -11071708 - MER81 DNA DNA 0 114 2 216 326 53 0 chr9 131200595 131200679 -11070765 - MIR SINE MIR -63 145 56 2187 128 0 3 chr9 131200921 131201234 -11070210 + AluSx SINE Alu 1 312 0 379 347 119 5 chr9 131201255 131201448 -11069996 + MIR SINE MIR 18 232 -30 289 283 42 88 chr9 131201547 131201787 -11069657 - L2 LINE L2 -176 3096 2868 182 304 0 0 chr9 131201982 131202028 -11069416 - MIR3 SINE MIR -54 154 109 457 273 38 0 chr9 131202469 131202601 -11068843 - MIR SINE MIR -19 243 107 379 279 82 0 chr9 131203021 131203143 -11068301 + L2 LINE L2 3180 3311 -2 923 231 73 3 chr9 131203402 131203705 -11067739 + LTR33 LTR ERVL 197 520 -1 306 219 16 114 chr9 131204003 131204045 -11067399 + MIR3 SINE MIR 61 105 -103 2155 104 21 0 chr9 131204045 131204334 -11067110 - AluSx SINE Alu -17 295 1 306 219 16 114 chr9 131204334 131204414 -11067030 + MIR3 SINE MIR 105 171 -37 239 286 126 50 chr9 131204515 131204634 -11066810 - MIR SINE MIR -65 143 16 * 295 208 214 26 chr9 131204584 131204738 -11066706 + L2 LINE L2 1996 2178 -1136 1081 172 0 0 chr9 131205017 131205191 -11066253 + AluJo SINE Alu 123 296 -16 2167 129 0 0 chr9 131205196 131205507 -11065937 + AluSx SINE Alu 1 311 -1 283 255 217 57 chr9 131205520 131205531 -11065913 + MER5A DNA MER1_type 61 69 -120 2169 95 16 13 chr9 131205531 131205837 -11065607 + AluSx SINE Alu 1 307 -5 283 255 217 57 chr9 131205837 131205931 -11065513 + MER5A DNA MER1_type 69 183 -6 1211 264 188 14 chr9 131205942 131206744 -11064700 + L2 LINE L2 2181 3190 -123 2077 108 20 0 chr9 131206744 131207049 -11064395 - AluSx SINE Alu -1 311 1 1211 264 188 14 chr9 131207049 131207200 -11064244 + L2 LINE L2 3190 3313 0 190 278 19 0 chr9 131207561 131207615 -11063829 - MIR SINE MIR -61 147 93 227 119 48 0 chr9 131207618 131207660 -11063784 - Alu SINE Alu -257 45 2 244 301 67 56 chr9 131208597 131208779 -11062665 + L1MC4 LINE L1 7311 7489 -553 1852 141 21 0 chr9 131208779 131209084 -11062360 + AluSx SINE Alu 1 311 0 244 301 67 56 chr9 131209084 131209299 -11062145 + L1MC4 LINE L1 7489 7825 -217 424 113 0 0 chr9 131209305 131209376 -11062068 - Alu SINE Alu -1 311 241 482 321 36 5 chr9 131209398 131209450 -11061994 + L1MC4 LINE L1 7844 7893 -149 2141 102 31 0 chr9 131209450 131209744 -11061700 + AluSx SINE Alu 1 303 -9 482 321 36 5 chr9 131209744 131209884 -11061560 + L1MC4 LINE L1 7893 8042 0 807 167 7 7 chr9 131209886 131210024 -11061420 + AluJo SINE Alu 1 138 -174 1537 167 80 19 chr9 131210024 131210327 -11061117 + AluJo SINE Alu 3 321 0 1764 161 70 0 chr9 131210339 131210624 -11060820 + AluSx SINE Alu 1 305 -7 243 298 108 50 chr9 131210670 131210928 -11060516 + L2 LINE L2 2812 3084 -188 272 249 17 6 chr9 131211449 131211626 -11059818 + (TG)n Simple_repeat Simple_repeat 1 179 0 320 264 6 0 chr9 131211651 131211825 -11059619 + (TG)n Simple_repeat Simple_repeat 1 175 0 428 240 34 14 chr9 131211996 131212142 -11059302 + MER113 DNA MER1_type? 45 193 -328 301 255 29 10 chr9 131212188 131212290 -11059154 + MER113 DNA MER1_type? 293 396 -125 2219 98 0 0 chr9 131212576 131212873 -11058571 - AluSx SINE Alu -5 307 11 304 253 81 10 chr9 131213763 131213862 -11057582 - MIR SINE MIR -60 148 43 307 286 42 67 chr9 131214186 131214505 -11056939 + L2 LINE L2 2660 3060 -253 239 257 9 83 chr9 131215044 131215153 -11056291 + MIR SINE MIR 12 112 -96 218 323 54 0 chr9 131215365 131215458 -11055986 + L2 LINE L2 3158 3255 -17 186 269 176 46 chr9 131215745 131215773 -11055671 - MIR SINE MIR -81 181 158 1975 124 13 3 chr9 131215773 131216071 -11055373 - AluSx SINE Alu -11 301 1 186 269 176 46 chr9 131216071 131216150 -11055294 - MIR SINE MIR -104 158 60 222 294 29 0 chr9 131216220 131216288 -11055156 - MIR SINE MIR -115 147 78 222 339 28 28 chr9 131216568 131216748 -11054696 + (CGTG)n Simple_repeat Simple_repeat 1 180 0 421 250 76 23 chr9 131217084 131217216 -11054228 - MIR3 SINE MIR -54 154 16 186 43 0 0 chr9 131217679 131217702 -11053742 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 353 305 89 48 chr9 131217704 131217973 -11053471 - L2 LINE L2 -3 3310 3031 209 271 212 18 chr9 131217985 131218155 -11053289 - L2 LINE L2 -385 2929 2727 206 317 79 0 chr9 131219401 131219502 -11051942 + MIR3 SINE MIR 74 182 -26 207 0 0 0 chr9 131219614 131219637 -11051807 + (CAG)n Simple_repeat Simple_repeat 2 24 0 243 279 47 0 chr9 131219776 131219862 -11051582 - MIR3 SINE MIR -24 184 95 265 229 16 0 chr9 131220402 131220463 -11050981 + MIR SINE MIR 86 147 -61 306 260 115 72 chr9 131221533 131221838 -11049606 + L2 LINE L2 2712 3113 -159 346 235 35 0 chr9 131222551 131222636 -11048808 + MIR SINE MIR 34 121 -87 213 94 0 0 chr9 131222960 131222992 -11048452 + (CA)n Simple_repeat Simple_repeat 2 33 0 183 100 0 0 chr9 131223318 131223348 -11048096 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 277 349 28 0 chr9 131223544 131223650 -11047794 - MIR3 SINE MIR -52 156 48 196 220 0 68 chr9 131224063 131224122 -11047322 + L2 LINE L2 3197 3251 -21 275 257 229 0 chr9 131224273 131224378 -11047066 + MIR3 SINE MIR 9 137 -71 607 169 7 81 chr9 131224502 131224638 -11046806 + FLAM_C SINE Alu 1 126 -7 315 0 0 0 chr9 131224638 131224673 -11046771 + (CA)n Simple_repeat Simple_repeat 2 36 0 2295 85 6 25 chr9 131224914 131225233 -11046211 + AluSq SINE Alu 1 313 0 828 127 0 0 chr9 131225289 131225407 -11046037 + AluJo/FLAM SINE Alu 1 118 -184 2424 75 0 3 chr9 131225407 131225712 -11045732 - AluSg SINE Alu -6 304 1 22 56 0 0 chr9 131225714 131225750 -11045694 + AT_rich Low_complexity Low_complexity 1 36 0 2263 105 3 3 chr9 131225981 131226294 -11045150 - AluSp SINE Alu 0 313 1 190 0 67 0 chr9 131226300 131226330 -11045114 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2077 108 21 0 chr9 131226332 131226618 -11044826 - AluSx SINE Alu -20 292 1 973 179 0 17 chr9 131226626 131226799 -11044645 - FRAM SINE Alu -6 170 1 21 0 0 0 chr9 131226842 131226863 -11044581 + AT_rich Low_complexity Low_complexity 1 21 0 1252 169 105 7 chr9 131226863 131227159 -11044285 + L1MB2 LINE L1 5840 6164 -7 40 21 0 0 chr9 131227159 131227206 -11044238 + AT_rich Low_complexity Low_complexity 1 47 0 1872 152 0 30 chr9 131227361 131227664 -11043780 + AluJo SINE Alu 3 296 -16 29 47 0 0 chr9 131227783 131227826 -11043618 + AT_rich Low_complexity Low_complexity 1 43 0 1444 153 161 0 chr9 131227888 131228149 -11043295 + AluSx SINE Alu 1 303 -9 1584 113 0 0 chr9 131228569 131228782 -11042662 + AluSq SINE Alu 1 213 -100 704 124 0 0 chr9 131228819 131228924 -11042520 + AluSg/x SINE Alu 205 309 0 2133 106 0 26 chr9 131228937 131229240 -11042204 + AluSg SINE Alu 1 295 -15 310 306 28 9 chr9 131230279 131230387 -11041057 - MIR SINE MIR -118 144 35 194 292 153 0 chr9 131231267 131231339 -11040105 - MIR SINE MIR -89 119 37 293 313 17 52 chr9 131232096 131232211 -11039233 + MIR3 SINE MIR 51 161 -47 22 0 0 0 chr9 131232221 131232243 -11039201 + AT_rich Low_complexity Low_complexity 1 22 0 467 307 89 11 chr9 131232310 131232489 -11038955 + MIR SINE MIR 56 248 -14 275 131 49 0 chr9 131233323 131233384 -11038060 + Charlie5 DNA MER1_type 2331 2394 -218 470 133 20 51 chr9 131233384 131233482 -11037962 + AluJo SINE Alu 41 135 -177 2293 106 0 0 chr9 131233482 131233785 -11037659 + AluSx SINE Alu 1 303 -9 2223 85 3 0 chr9 131233787 131234070 -11037374 + AluSg SINE Alu 1 284 -26 591 189 22 99 chr9 131234285 131234358 -11037086 + L1M4 LINE L1 4254 4331 -1815 2192 122 0 3 chr9 131234358 131234669 -11036775 - AluSg SINE Alu 0 310 1 591 189 22 99 chr9 131234669 131234817 -11036627 + L1M4 LINE L1 4331 4458 -1688 920 144 0 0 chr9 131234885 131235024 -11036420 - AluJb SINE Alu -39 273 135 296 141 51 39 chr9 131235024 131235102 -11036342 + Charlie5 DNA MER1_type 2546 2624 0 196 171 0 0 chr9 131236054 131236089 -11035355 - MIR SINE MIR -109 153 119 182 323 165 23 chr9 131236092 131236225 -11035219 - L2 LINE L2 0 3272 3121 2016 147 3 3 chr9 131236260 131236572 -11034872 + AluSx SINE Alu 1 312 0 333 99 56 14 chr9 131236578 131236649 -11034795 + GA-rich Low_complexity Low_complexity 4 77 0 295 184 28 37 chr9 131236627 131236736 -11034708 + G-rich Low_complexity Low_complexity 3 110 0 * 2315 88 3 0 chr9 131236800 131237108 -11034336 + AluSp SINE Alu 3 311 -2 813 224 4 160 chr9 131237111 131237374 -11034070 + LTR8 LTR ERV1 33 244 -447 848 223 117 74 chr9 131237558 131238020 -11033424 + LTR8A LTR ERV1 246 727 0 319 358 91 0 chr9 131238030 131238206 -11033238 - L2 LINE L2 -288 3025 2834 210 279 29 15 chr9 131238320 131238388 -11033056 + MIR3 SINE MIR 109 177 -31 249 337 82 31 chr9 131238400 131238596 -11032848 + L2 LINE L2 2992 3197 -75 389 323 24 0 chr9 131238920 131239047 -11032397 + MIR SINE MIR 57 186 -76 277 229 62 31 chr9 131239258 131239354 -11032090 - MIR SINE MIR -77 131 33 436 316 193 12 chr9 131239696 131239940 -11031504 + L2 LINE L2 2985 3272 0 903 182 32 0 chr9 131240037 131240224 -11031220 + LTR41 LTR ERVL 13 205 -568 592 213 176 28 chr9 131240422 131240638 -11030806 + LTR41 LTR ERVL 519 766 -7 208 397 0 0 chr9 131240962 131241040 -11030404 - MIR SINE MIR -88 120 43 334 253 36 0 chr9 131241383 131241466 -11029978 - MIR SINE MIR -114 148 63 183 336 17 43 chr9 131242516 131242632 -11028812 - MIR3 SINE MIR -48 160 48 729 216 20 0 chr9 131242847 131242995 -11028449 + MIR SINE MIR 38 188 -74 2427 68 0 0 chr9 131243041 131243350 -11028094 + AluSc SINE Alu 1 309 0 326 263 63 0 chr9 131243562 131243657 -11027787 - MIR SINE MIR -99 163 63 258 81 0 0 chr9 131244366 131244403 -11027041 + (CCCCCG)n Simple_repeat Simple_repeat 6 42 0 27 29 0 0 chr9 131244433 131244467 -11026977 + GC_rich Low_complexity Low_complexity 1 34 0 21 71 0 0 chr9 131244606 131244648 -11026796 + GC_rich Low_complexity Low_complexity 1 42 0 254 294 193 8 chr9 131244953 131245072 -11026372 + MIR SINE MIR 65 205 -57 389 311 57 71 chr9 131245074 131245203 -11026241 + L1MC4a LINE L1 5687 5813 -1995 2453 63 3 13 chr9 131245203 131245518 -11025926 + AluSp SINE Alu 1 312 -1 389 311 57 71 chr9 131245518 131245600 -11025844 + L1MC4a LINE L1 5813 5895 -1913 1555 131 23 102 chr9 131245605 131245949 -11025495 + AluYb8 SINE Alu 1 317 -1 349 240 199 45 chr9 131245980 131246201 -11025243 + L1ME4a LINE L1 5629 5883 -287 2065 62 3 81 chr9 131246237 131246575 -11024869 + AluSx SINE Alu 1 314 0 1743 124 4 4 chr9 131246578 131246837 -11024607 + AluSx SINE Alu 1 259 -53 2144 111 3 7 chr9 131246969 131247275 -11024169 - AluSx SINE Alu -7 305 1 318 250 69 69 chr9 131247282 131247381 -11024063 + L1ME4a LINE L1 5993 6095 -26 2093 109 3 3 chr9 131247381 131247704 -11023740 - AluSx SINE Alu 0 323 1 318 250 69 69 chr9 131247704 131247719 -11023725 + L1ME4a LINE L1 6094 6108 -13 39 22 0 0 chr9 131247719 131247765 -11023679 + AT_rich Low_complexity Low_complexity 1 46 0 2471 69 0 0 chr9 131247806 131248112 -11023332 - AluY SINE Alu -5 306 1 417 227 126 8 chr9 131248900 131249019 -11022425 - MIR SINE MIR -20 242 110 285 378 81 0 chr9 131249313 131249485 -11021959 - MIR3 SINE MIR -4 204 19 386 289 80 27 chr9 131250516 131250703 -11020741 - MIR SINE MIR -50 212 16 325 157 43 207 chr9 131251003 131251143 -11020301 - MER45A DNA AcHobo -4 174 58 2191 119 0 3 chr9 131251566 131251876 -11019568 - AluSx SINE Alu -3 309 1 518 204 19 0 chr9 131251879 131251982 -11019462 - FLAM_C SINE Alu -9 134 30 2274 70 0 7 chr9 131252322 131252620 -11018824 + AluSq SINE Alu 1 296 -17 335 360 40 0 chr9 131253621 131253771 -11017673 + MIR SINE MIR 36 191 -71 2183 78 3 7 chr9 131253997 131254293 -11017151 + AluSq SINE Alu 6 300 -13 28 86 0 0 chr9 131254357 131254427 -11017017 + AT_rich Low_complexity Low_complexity 1 70 0 180 0 0 0 chr9 131254437 131254457 -11016987 + (TA)n Simple_repeat Simple_repeat 2 21 0 331 361 40 20 chr9 131254482 131254684 -11016760 - MIR SINE MIR -42 220 15 214 220 61 121 chr9 131255306 131255438 -11016006 + MIR SINE MIR 32 155 -107 587 299 103 46 chr9 131255707 131256075 -11015369 - L2 LINE L2 -121 3192 2804 2130 100 3 13 chr9 131256372 131256671 -11014773 - AluSg SINE Alu -14 296 1 1027 94 0 7 chr9 131256671 131256809 -11014635 - AluSq/x SINE Alu -175 137 1 198 371 30 30 chr9 131256932 131257099 -11014345 + L2 LINE L2 3122 3288 -25 209 255 174 20 chr9 131257677 131257775 -11013669 - MIR SINE MIR -102 160 48 275 294 20 10 chr9 131257836 131257938 -11013506 + MIR SINE MIR 155 257 -5 476 286 9 9 chr9 131258060 131258188 -11013256 + MIR SINE MIR 34 160 -59 2185 117 3 0 chr9 131258189 131258497 -11012947 + AluSx SINE Alu 1 309 -3 1076 127 70 0 chr9 131258533 131258691 -11012753 + AluSx SINE Alu 1 169 -143 813 128 0 30 chr9 131258858 131258991 -11012453 + AluSx SINE Alu 173 301 -9 2292 87 7 0 chr9 131258999 131259297 -11012147 + AluSp SINE Alu 1 300 -13 544 71 0 0 chr9 131259321 131259406 -11012038 + Alu SINE Alu 225 309 -1 267 333 63 0 chr9 131259406 131259517 -11011927 - MIR3 SINE MIR -80 128 11 316 335 90 26 chr9 131259920 131260075 -11011369 - MIR SINE MIR -97 165 1 249 333 67 44 chr9 131260075 131260206 -11011238 + MIR SINE MIR 85 218 -44 220 330 29 48 chr9 131261062 131261165 -11010279 - MIR SINE MIR -113 149 49 203 283 58 64 chr9 131261551 131261724 -11009720 - MIR3 SINE MIR -24 184 13 216 208 39 26 chr9 131261909 131261986 -11009458 + G-rich Low_complexity Low_complexity 6 83 0 323 174 10 71 chr9 131262367 131262465 -11008979 + MER53 DNA DNA 1 92 -97 239 224 17 0 chr9 131262539 131262597 -11008847 - MIR SINE MIR -190 72 14 800 100 0 0 chr9 131262813 131262923 -11008521 - AluSx SINE Alu -11 301 192 1125 86 0 0 chr9 131262923 131263063 -11008381 - AluSx SINE Alu -172 140 1 708 303 109 21 chr9 131263854 131264276 -11007168 + L2 LINE L2 2855 3313 0 1480 196 46 7 chr9 131264683 131264798 -11006646 + AluJb SINE Alu 6 115 -197 396 0 0 0 chr9 131264798 131264842 -11006602 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1480 196 46 7 chr9 131264842 131265007 -11006437 + AluJb SINE Alu 115 297 -15 2138 123 7 0 chr9 131265072 131265382 -11006062 - AluSx SINE Alu 0 312 1 445 246 22 72 chr9 131265663 131265801 -11005643 + L2 LINE L2 3140 3270 -2 355 195 69 23 chr9 131265797 131265884 -11005560 - MIR SINE MIR -95 167 77 * 194 317 17 0 chr9 131266057 131266117 -11005327 - MIR SINE MIR -61 147 87 330 275 92 8 chr9 131266202 131266322 -11005122 + MIR SINE MIR 23 152 -56 545 292 118 0 chr9 131266374 131266569 -11004875 + MIR SINE MIR 12 229 -33 1090 135 96 129 chr9 131267174 131267302 -11004142 + MER33 DNA MER1_type 2 133 -2452 2143 84 26 16 chr9 131267302 131267611 -11003833 + AluSx SINE Alu 1 312 0 1090 135 96 129 chr9 131267611 131267816 -11003628 + MER33 DNA MER1_type 133 324 0 184 268 0 0 chr9 131268773 131268814 -11002630 + MIR SINE MIR 109 149 -113 1952 115 3 59 chr9 131268973 131269122 -11002322 + AluSg SINE Alu 1 124 -186 2096 85 0 4 chr9 131269122 131269394 -11002050 + AluSx SINE Alu 29 299 -13 1952 115 3 59 chr9 131269394 131269566 -11001878 + AluSg SINE Alu 124 304 -6 519 187 0 0 chr9 131269760 131269867 -11001577 + (CA)n Simple_repeat Simple_repeat 2 108 0 428 318 72 36 chr9 131270171 131270344 -11001100 - MIR SINE MIR -48 214 32 2238 105 0 0 chr9 131270344 131270650 -11000794 - AluSg SINE Alu -4 306 1 428 318 72 36 chr9 131270650 131270671 -11000773 - MIR SINE MIR -230 32 13 557 135 0 40 chr9 131271001 131271127 -11000317 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 1881 166 0 0 chr9 131271147 131271443 -11000001 - AluJb SINE Alu -16 296 1 439 308 152 5 chr9 131271704 131271975 -10999469 + MIR SINE MIR 25 258 -4 269 315 109 60 chr9 131273697 131273964 -10997480 - L2 LINE L2 -179 3093 2814 430 242 8 32 chr9 131274250 131274374 -10997070 - MIR3 SINE MIR -9 199 79 318 235 122 15 chr9 131274815 131274984 -10996460 + MIR SINE MIR 37 262 0 448 322 60 0 chr9 131274987 131275136 -10996308 + MIR SINE MIR 13 170 -92 229 299 0 30 chr9 131275348 131275415 -10996029 - MIR SINE MIR -80 182 118 219 304 13 38 chr9 131275990 131276069 -10995375 - MIR SINE MIR -63 145 69 * 379 226 57 38 chr9 131276068 131276174 -10995270 - L2 LINE L2 0 3272 3165 * 422 272 234 5 chr9 131276160 131276625 -10994819 + L2 LINE L2 2680 3270 -43 1102 133 6 0 chr9 131276809 131276974 -10994470 - AluSg/x SINE Alu -13 299 134 2169 108 0 10 chr9 131276974 131277140 -10994304 - AluSx SINE Alu -10 302 136 2231 99 7 0 chr9 131277140 131277443 -10994001 - AluSc SINE Alu -4 305 1 2474 52 0 13 chr9 131277444 131277752 -10993692 - AluY SINE Alu -7 304 1 2169 108 0 10 chr9 131277752 131277888 -10993556 - AluSx SINE Alu -175 137 1 320 286 218 17 chr9 131277899 131278248 -10993196 - L2 LINE L2 -609 2705 2287 2186 100 3 3 chr9 131278381 131278680 -10992764 + AluSq SINE Alu 1 299 -14 2298 104 3 0 chr9 131278791 131279100 -10992344 + AluSp SINE Alu 3 312 -1 225 290 16 0 chr9 131279814 131279876 -10991568 + L2 LINE L2 3197 3259 -54 214 350 0 0 chr9 131280836 131280896 -10990548 - L2 LINE L2 -3 3269 3210 202 268 93 21 chr9 131281728 131281825 -10989619 - L2 LINE L2 -19 3253 3150 429 321 25 25 chr9 131282112 131282271 -10989173 + MIR SINE MIR 84 242 -20 264 273 172 0 chr9 131283068 131283167 -10988277 - MIR SINE MIR -65 143 28 765 122 81 0 chr9 131283576 131283699 -10987745 - FLAM_C SINE Alu 0 133 1 181 289 144 21 chr9 131283741 131283819 -10987625 + L2 LINE L2 3155 3249 -23 2275 107 0 3 chr9 131283819 131284128 -10987316 - AluSx SINE Alu -4 308 1 181 289 144 21 chr9 131284128 131284146 -10987298 + L2 LINE L2 3249 3263 -9 2070 96 48 10 chr9 131284381 131284674 -10986770 - AluSx SINE Alu -8 304 1 200 196 22 22 chr9 131285108 131285154 -10986290 - MIR SINE MIR -104 158 113 326 295 0 29 chr9 131288215 131288320 -10983124 - MIR SINE MIR -98 164 63 263 295 13 13 chr9 131288367 131288445 -10982999 - MIR SINE MIR -78 184 107 195 305 0 105 chr9 131289199 131289304 -10982140 - L2 LINE L2 -12 3301 3208 206 357 89 9 chr9 131289348 131289460 -10981984 - MIR SINE MIR -126 136 16 285 364 16 0 chr9 131289899 131290028 -10981416 - MIR SINE MIR -52 210 80 410 269 29 47 chr9 131290958 131291129 -10980315 - L2 LINE L2 -195 3077 2910 1939 94 0 92 chr9 131292016 131292344 -10979100 + AluSc SINE Alu 1 298 -11 374 316 131 0 chr9 131292354 131292522 -10978922 - MIR SINE MIR -17 245 56 362 344 42 88 chr9 131292530 131292815 -10978629 + L2 LINE L2 2977 3248 -24 327 366 44 15 chr9 131293381 131293586 -10977858 + MIR SINE MIR 29 239 -23 2446 59 10 0 chr9 131293924 131294227 -10977217 + AluY SINE Alu 1 306 -5 321 260 30 10 chr9 131294303 131294403 -10977041 - MIR SINE MIR -74 134 33 386 260 110 32 chr9 131294858 131295012 -10976432 + MIR SINE MIR 17 182 -80 271 129 0 176 chr9 131296389 131296426 -10975018 - MIR SINE MIR -115 147 132 2483 36 13 7 chr9 131296426 131296735 -10974709 + AluY SINE Alu 1 311 0 271 129 0 176 chr9 131296735 131296782 -10974662 - MIR SINE MIR -130 132 78 203 280 192 24 chr9 131296934 131297059 -10974385 + MIR SINE MIR 107 252 -10 257 339 83 0 chr9 131297533 131297701 -10973743 + L1ME LINE L1 5719 5900 -221 1879 160 0 13 chr9 131297701 131298007 -10973437 - AluSx SINE Alu -10 302 1 785 164 0 0 chr9 131298008 131298136 -10973308 + AluSg/x SINE Alu 169 296 -14 366 296 130 12 chr9 131299298 131299460 -10971984 - MIR SINE MIR -70 192 12 219 323 0 0 chr9 131299480 131299542 -10971902 - MIR SINE MIR 0 262 201 309 356 48 0 chr9 131299597 131299743 -10971701 - MIR SINE MIR -77 185 33 398 339 22 39 chr9 131300245 131300425 -10971019 - MIR SINE MIR -74 188 12 205 287 115 0 chr9 131300616 131300703 -10970741 - L2 LINE L2 -273 3040 2944 319 259 12 0 chr9 131301169 131301250 -10970194 - L2 LINE L2 0 3313 3232 296 176 37 37 chr9 131301285 131301393 -10970051 + L1MB7 LINE L1 4156 4263 -1883 2291 104 0 0 chr9 131301393 131301701 -10969743 - AluSq SINE Alu -5 308 1 189 0 0 0 chr9 131301701 131301722 -10969722 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1893 149 3 0 chr9 131301722 131302004 -10969440 - AluSx SINE Alu -29 283 1 871 163 0 12 chr9 131302017 131302247 -10969197 + AluSx SINE Alu 4 310 -2 4531 161 46 35 chr9 131302251 131302798 -10968646 + L1MB7 LINE L1 4272 4812 -1372 1458 125 9 5 chr9 131302798 131303014 -10968430 + AluSx SINE Alu 76 292 -18 4531 161 46 35 chr9 131303014 131303377 -10968067 + L1MB7 LINE L1 4812 5170 -1014 2032 156 0 0 chr9 131303377 131303685 -10967759 + AluJo SINE Alu 5 312 0 4531 161 46 35 chr9 131303685 131304479 -10966965 + L1MB7 LINE L1 5170 5993 -191 2172 142 35 14 chr9 131304479 131304846 -10966598 + THE1C LTR MaLR 1 375 0 4531 161 46 35 chr9 131304846 131305031 -10966413 + L1MB7 LINE L1 5993 6175 -9 545 302 79 3 chr9 131305034 131305399 -10966045 - L2 LINE L2 -157 3156 2764 351 304 118 7 chr9 131306035 131306170 -10965274 - MIR SINE MIR -88 174 25 1122 278 93 37 chr9 131306455 131306919 -10964525 - L2 LINE L2 -1 3312 2823 21 0 0 0 chr9 131307167 131307188 -10964256 + AT_rich Low_complexity Low_complexity 1 21 0 797 176 0 22 chr9 131307737 131307873 -10963571 + FLAM_C SINE Alu 1 133 0 266 273 94 16 chr9 131308934 131309062 -10962382 - L2 LINE L2 -263 3050 2913 243 233 68 0 chr9 131309143 131309216 -10962228 + MIR SINE MIR 107 185 -77 2363 69 6 22 chr9 131309810 131310127 -10961317 + AluSx SINE Alu 1 312 0 529 118 324 2 chr9 131310211 131310354 -10961090 - MER20 DNA MER1_type -45 174 1 212 267 17 0 chr9 131310371 131310431 -10961013 - MER5A DNA MER1_type -121 68 8 892 173 0 0 chr9 131311317 131311450 -10959994 + FLAM_A SINE Alu 1 133 0 188 350 94 0 chr9 131311773 131311890 -10959554 - MIR3 SINE MIR -38 170 43 478 296 66 33 chr9 131312258 131312471 -10958973 - MIR SINE MIR -12 250 31 661 121 164 17 chr9 131312973 131313089 -10958355 - FLAM_A SINE Alu 0 133 1 361 271 101 8 chr9 131313390 131313519 -10957925 + L2 LINE L2 3171 3311 -2 311 268 14 0 chr9 131313938 131314009 -10957435 - L2 LINE L2 0 3313 3242 392 298 85 0 chr9 131314445 131314586 -10956858 - MIR SINE MIR -8 254 102 570 234 149 34 chr9 131314986 131315110 -10956334 - L1ME3A LINE L1 -113 6057 5949 2148 94 0 17 chr9 131315110 131315409 -10956035 - AluSx SINE Alu -18 294 1 570 234 149 34 chr9 131315409 131315519 -10955925 - L1ME3A LINE L1 -221 5949 5796 226 326 49 42 chr9 131316223 131316367 -10955077 - MIR SINE MIR -117 145 1 255 325 200 7 chr9 131316671 131316951 -10954493 - L2 LINE L2 -66 3206 2873 479 312 52 0 chr9 131317433 131317633 -10953811 - MIR SINE MIR -11 251 41 308 319 57 44 chr9 131320504 131320695 -10950749 + MIR3 SINE MIR 6 193 -58 451 323 46 28 chr9 131321190 131321407 -10950037 + MIR SINE MIR 28 248 -14 220 316 51 19 chr9 131321430 131321581 -10949863 + MIR SINE MIR 53 243 -19 263 175 88 0 chr9 131322662 131322719 -10948725 - MIR SINE MIR -90 172 111 258 217 58 0 chr9 131322746 131322815 -10948629 + MIR SINE MIR 81 153 -109 290 149 0 0 chr9 131322924 131322971 -10948473 - MIR SINE MIR -147 115 69 210 208 0 75 chr9 131323320 131323373 -10948071 + MIR SINE MIR 95 143 -65 22 35 0 0 chr9 131323503 131323532 -10947912 + AT_rich Low_complexity Low_complexity 1 29 0 1865 125 16 47 chr9 131323538 131323858 -10947586 + AluSx SINE Alu 1 310 -2 967 184 6 0 chr9 131323858 131324026 -10947418 + AluSq SINE Alu 134 302 -11 620 200 26 0 chr9 131324026 131324141 -10947303 - AluJo/FLAM SINE Alu -194 118 1 29 28 0 0 chr9 131325569 131325605 -10945839 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 131325831 131325853 -10945591 + GC_rich Low_complexity Low_complexity 1 22 0 27 81 0 0 chr9 131325985 131326047 -10945397 + GC_rich Low_complexity Low_complexity 1 62 0 386 355 119 16 chr9 131326969 131327179 -10944265 - L2 LINE L2 -350 2964 2777 2239 84 3 0 chr9 131327179 131327478 -10943966 - AluSq SINE Alu -2 311 12 386 355 119 16 chr9 131327478 131327704 -10943740 - L2 LINE L2 -537 2777 2483 220 328 16 0 chr9 131327849 131327910 -10943534 - MIR SINE MIR -114 148 87 205 270 0 16 chr9 131328294 131328357 -10943087 + MIR SINE MIR 46 107 -155 212 333 37 0 chr9 131328524 131328605 -10942839 + MIR SINE MIR 123 206 -56 322 319 66 42 chr9 131328689 131328979 -10942465 - L2 LINE L2 -131 3182 2838 225 0 0 0 chr9 131329016 131329041 -10942403 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 453 102 0 0 chr9 131329048 131329107 -10942337 - AluSg/x SINE Alu -38 274 216 445 311 44 102 chr9 131329111 131329198 -10942246 - L2 LINE L2 -529 2785 2695 243 0 0 0 chr9 131329198 131329225 -10942219 + (TG)n Simple_repeat Simple_repeat 2 28 0 2017 102 11 0 chr9 131329225 131329508 -10941936 - AluSq SINE Alu -27 286 1 2031 77 4 0 chr9 131329516 131329777 -10941667 - AluSp SINE Alu -7 306 45 445 311 44 102 chr9 131329777 131330042 -10941402 - L2 LINE L2 -625 2689 2444 283 333 128 0 chr9 131330274 131330391 -10941053 + L2 LINE L2 3137 3268 -4 1412 134 5 14 chr9 131330391 131330608 -10940836 + AluJb SINE Alu 7 221 -91 413 322 17 0 chr9 131330626 131330741 -10940703 - L1MC4 LINE L1 -1311 6731 6615 746 113 8 65 chr9 131330741 131330865 -10940579 + FLAM_C SINE Alu 1 117 -26 26 30 0 0 chr9 131330865 131330898 -10940546 + AT_rich Low_complexity Low_complexity 1 33 0 1930 128 6 50 chr9 131330916 131331061 -10940383 + AluSx SINE Alu 1 151 -161 2078 132 0 0 chr9 131331061 131331365 -10940079 + AluSx SINE Alu 1 304 -8 1930 128 6 50 chr9 131331365 131331540 -10939904 + AluSx SINE Alu 151 307 -5 22 35 0 0 chr9 131331579 131331608 -10939836 + AT_rich Low_complexity Low_complexity 1 29 0 184 309 0 0 chr9 131331630 131331685 -10939759 + L2 LINE L2 2752 2806 -508 306 148 0 0 chr9 131331972 131332026 -10939418 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 555 266 155 39 chr9 131332529 131332864 -10938580 - L1ME LINE L1 -488 5633 5260 1894 104 75 0 chr9 131332899 131333179 -10938265 - AluSq SINE Alu -12 301 1 1852 164 7 0 chr9 131333203 131333508 -10937936 - AluJo SINE Alu -3 309 3 1184 176 45 0 chr9 131333654 131333853 -10937591 + MER3 DNA MER1_type 1 208 -1 353 317 10 0 chr9 131333919 131334023 -10937421 + MIR SINE MIR 81 185 -77 193 56 28 28 chr9 131334411 131334447 -10936997 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 264 289 77 0 chr9 131334582 131334686 -10936758 - L2 LINE L2 -230 3083 2972 1651 146 6 78 chr9 131334822 131334973 -10936471 + AluSq SINE Alu 1 118 -195 2346 80 10 0 chr9 131334973 131335275 -10936169 + AluSx SINE Alu 1 305 -7 1651 146 6 78 chr9 131335275 131335444 -10936000 + AluSq SINE Alu 118 298 -15 193 213 98 16 chr9 131335453 131335514 -10935930 - L2 LINE L2 -533 2781 2716 356 261 9 70 chr9 131335665 131335780 -10935664 + MIR SINE MIR 47 154 -108 1221 123 109 36 chr9 131336322 131336528 -10934916 - L1MA4 LINE L1 0 6300 6068 1990 158 0 3 chr9 131336528 131336839 -10934605 - AluSx SINE Alu 0 312 3 1221 123 109 36 chr9 131336839 131336908 -10934536 - L1MA4 LINE L1 -232 6068 6005 388 289 69 28 chr9 131336975 131337207 -10934237 + MIR SINE MIR 1 254 -8 2226 103 13 0 chr9 131337209 131337510 -10933934 - AluSx SINE Alu -7 305 1 1933 120 32 0 chr9 131337512 131337795 -10933649 - AluSg SINE Alu -18 292 1 216 279 16 0 chr9 131337795 131337856 -10933588 + MIR SINE MIR 164 225 -37 334 214 57 0 chr9 131337861 131337931 -10933513 - L2 LINE L2 -9 3304 3231 1961 116 7 4 chr9 131338067 131338344 -10933100 - AluSx SINE Alu -34 278 1 202 325 77 43 chr9 131338390 131338507 -10932937 - MIR SINE MIR -25 237 117 * 210 288 17 0 chr9 131338505 131338564 -10932880 + L2 LINE L2 3211 3270 -2 782 279 65 28 chr9 131338743 131338990 -10932454 - MIR SINE MIR -1 261 6 1333 116 0 77 chr9 131339005 131339198 -10932246 - AluSg/x SINE Alu -1 309 135 2187 104 3 10 chr9 131339198 131339507 -10931937 - AluY SINE Alu -4 307 1 1333 116 0 77 chr9 131339507 131339546 -10931898 - AluSg/x SINE Alu -175 135 95 1236 72 0 0 chr9 131339646 131339799 -10931645 - AluSg SINE Alu -157 153 1 1619 133 13 0 chr9 131339850 131340083 -10931361 - AluSx SINE Alu -76 236 1 2162 98 3 3 chr9 131340173 131340469 -10930975 - AluSc SINE Alu -13 296 1 267 350 93 16 chr9 131340476 131340722 -10930722 - L1ME LINE L1 -346 5775 5511 1928 182 44 85 chr9 131341219 131341675 -10929769 + MLT1D LTR MaLR 1 434 -71 2106 129 10 0 chr9 131341675 131341984 -10929460 - AluSx SINE Alu 0 312 1 1928 182 44 85 chr9 131341984 131342054 -10929390 + MLT1D LTR MaLR 434 505 0 295 299 116 18 chr9 131342323 131342487 -10928957 + MIR3 SINE MIR 2 181 -27 197 181 194 0 chr9 131342594 131342666 -10928778 - MIR SINE MIR 0 262 177 350 293 23 30 chr9 131342674 131342807 -10928637 + L2 LINE L2 2745 2876 -438 2177 117 0 3 chr9 131343030 131343337 -10928107 + AluSg SINE Alu 1 306 -4 1668 171 4 7 chr9 131343446 131343720 -10927724 + AluJb SINE Alu 1 273 -39 23 54 0 0 chr9 131343720 131343757 -10927687 + AT_rich Low_complexity Low_complexity 1 37 0 2143 123 0 0 chr9 131343773 131344074 -10927370 + AluSx SINE Alu 12 312 0 468 336 52 33 chr9 131344502 131344868 -10926576 + L1MA3 LINE L1 5462 5834 -471 * 851 282 34 34 chr9 131344553 131344904 -10926540 + L1MC4a LINE L1 5517 5867 -1941 2174 114 7 0 chr9 131345410 131345717 -10925727 + AluSx SINE Alu 4 312 0 472 53 0 0 chr9 131345725 131345782 -10925662 + Alu SINE Alu 5 61 -250 2187 110 7 3 chr9 131345907 131346208 -10925236 - AluSq SINE Alu -11 302 1 25 40 0 20 chr9 131346251 131346276 -10925168 + AT_rich Low_complexity Low_complexity 1 25 -24 2120 98 39 0 chr9 131346276 131346562 -10924882 - AluSx SINE Alu -15 297 1 25 40 0 20 chr9 131346562 131346586 -10924858 + AT_rich Low_complexity Low_complexity 25 49 0 198 0 0 0 chr9 131347357 131347379 -10924065 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1460 147 73 11 chr9 131347379 131347652 -10923792 - AluJb SINE Alu -22 290 1 830 146 0 0 chr9 131347663 131347786 -10923658 - AluJb SINE Alu -189 123 1 671 246 96 23 chr9 131347849 131348069 -10923375 + MLT1D LTR MaLR 254 489 -16 2230 181 8 31 chr9 131348188 131348516 -10922928 - LTR27 LTR ERV1 -141 495 222 1812 121 0 25 chr9 131348516 131348797 -10922647 + AluSg SINE Alu 34 307 -3 2230 181 8 31 chr9 131348797 131349008 -10922436 - LTR27 LTR ERV1 -414 222 8 2211 86 3 22 chr9 131349011 131349324 -10922120 - AluSg SINE Alu -3 307 1 213 39 0 0 chr9 131349745 131349771 -10921673 + (CCCTAA)n Simple_repeat Simple_repeat 1 26 0 249 83 0 0 chr9 131350972 131351008 -10920436 + (TG)n Simple_repeat Simple_repeat 1 36 0 227 250 18 0 chr9 131354066 131354122 -10917322 + MIR SINE MIR 108 164 -98 2220 88 10 0 chr9 131356198 131356492 -10914952 + AluSg SINE Alu 1 297 -13 2173 118 0 0 chr9 131356501 131356797 -10914647 + AluSx SINE Alu 1 296 -16 1574 119 0 0 chr9 131356807 131357026 -10914418 + AluSg/x SINE Alu 81 299 -13 701 154 27 0 chr9 131357039 131357149 -10914295 + FRAM SINE Alu 40 152 -24 303 138 0 220 chr9 131360433 131360542 -10910902 - MLT1-int LTR MaLR -728 643 559 464 180 0 56 chr9 131360559 131360670 -10910774 + AluJ/FRAM SINE Alu 215 312 0 2004 114 27 13 chr9 131360907 131361206 -10910238 - AluSx SINE Alu -9 303 1 1955 135 10 6 chr9 131361560 131361871 -10909573 - AluSx SINE Alu 0 312 1 192 152 0 0 chr9 131362017 131362050 -10909394 + C-rich Low_complexity Low_complexity 2 34 0 2089 106 13 23 chr9 131362050 131362353 -10909091 - AluSx SINE Alu -12 300 1 2222 92 0 3 chr9 131362355 131362648 -10908796 - AluSx SINE Alu -20 292 1 493 101 0 0 chr9 131363092 131363161 -10908283 + Alu SINE Alu 228 296 -13 1756 162 3 3 chr9 131363173 131363480 -10907964 - AluSx SINE Alu 0 307 1 251 336 29 36 chr9 131363480 131363617 -10907827 + L2 LINE L2 2911 3046 -226 867 136 13 128 chr9 131363707 131363753 -10907691 - MER20 DNA MER1_type -1 218 168 2239 89 0 13 chr9 131363753 131364056 -10907388 - AluY SINE Alu -12 299 1 2301 76 3 7 chr9 131364058 131364360 -10907084 - AluSp SINE Alu -12 301 1 867 136 13 128 chr9 131364360 131364466 -10906978 - MER20 DNA MER1_type -52 167 96 2186 113 10 0 chr9 131364466 131364766 -10906678 - AluSx SINE Alu -9 303 1 867 136 13 128 chr9 131364766 131364844 -10906600 - MER20 DNA MER1_type -123 96 11 223 373 90 8 chr9 131364962 131365096 -10906348 - MIR3 SINE MIR -26 182 38 2363 49 3 0 chr9 131365636 131365943 -10905501 - AluY SINE Alu 0 308 1 302 336 62 0 chr9 131365955 131366083 -10905361 - Charlie8 DNA MER1_type -2259 158 23 185 309 31 21 chr9 131366177 131366274 -10905170 + MIR3 SINE MIR 79 176 -32 1418 123 0 0 chr9 131366501 131366696 -10904748 - AluSg/x SINE Alu -18 294 100 1596 159 0 0 chr9 131366798 131367049 -10904395 - AluSx SINE Alu -61 251 1 392 288 22 36 chr9 131367126 131367156 -10904288 + MLT1K LTR MaLR 73 102 -486 2529 135 30 103 chr9 131367156 131367514 -10903930 + LTR24 LTR ERV1 1 384 -83 1922 150 6 13 chr9 131367514 131367828 -10903616 - AluSx SINE Alu 0 312 1 2529 135 30 103 chr9 131367828 131367839 -10903605 + LTR24 LTR ERV1 384 394 -73 2239 113 3 0 chr9 131367839 131368149 -10903295 - AluSq SINE Alu -2 311 1 2529 135 30 103 chr9 131368149 131368282 -10903162 + LTR24 LTR ERV1 394 467 0 392 288 22 36 chr9 131368282 131368390 -10903054 + MLT1K LTR MaLR 102 209 -379 393 231 215 0 chr9 131368452 131368582 -10902862 + MLT1K LTR MaLR 188 345 -243 2261 106 3 0 chr9 131368637 131368940 -10902504 - AluSx SINE Alu -8 304 1 213 214 0 0 chr9 131368997 131369039 -10902405 + MIR SINE MIR 111 152 -56 2080 125 0 0 chr9 131369220 131369515 -10901929 - AluSq SINE Alu -18 295 1 448 35 0 0 chr9 131369658 131369715 -10901729 - AluY SINE Alu -254 57 1 1027 123 0 32 chr9 131369726 131369905 -10901539 - AluSg/x SINE Alu 0 308 135 3262 249 126 16 chr9 131369923 131371228 -10900216 - L1MEc LINE L1 -4906 1490 43 1402 158 128 4 chr9 131371403 131371669 -10899775 - AluJb SINE Alu -13 299 1 741 250 82 0 chr9 131371790 131371998 -10899446 - MIR SINE MIR -36 226 2 1587 184 13 13 chr9 131372107 131372412 -10899032 - AluJb SINE Alu -7 305 1 1416 173 0 92 chr9 131372685 131373021 -10898423 - AluSp SINE Alu -8 305 1 2401 51 6 26 chr9 131373023 131373336 -10898108 - AluY SINE Alu -4 307 1 1101 92 0 0 chr9 131373337 131373479 -10897965 - AluSq/x SINE Alu -171 142 1 1920 75 8 0 chr9 131373599 131373852 -10897592 + AluSp SINE Alu 59 313 0 1923 133 22 35 chr9 131374266 131374583 -10896861 - AluSq SINE Alu 0 313 1 1917 128 20 3 chr9 131374585 131374883 -10896561 - AluSx SINE Alu -8 304 2 2170 90 0 3 chr9 131379012 131379300 -10892144 + AluSx SINE Alu 26 312 0 1926 108 14 14 chr9 131379300 131379627 -10891817 + AluSx SINE Alu 1 327 0 183 308 90 13 chr9 131379849 131379927 -10891517 - MIR SINE MIR -95 167 84 23 0 0 0 chr9 131382739 131382762 -10888682 + GC_rich Low_complexity Low_complexity 1 23 0 570 312 48 25 chr9 131384189 131384428 -10887016 - MIR SINE MIR -11 251 11 1041 159 0 0 chr9 131386864 131387027 -10884417 + AluSg/x SINE Alu 135 297 -15 297 301 249 29 chr9 131387963 131388309 -10883135 + L3 LINE CR1 1153 1574 -3 2329 76 0 19 chr9 131388355 131388672 -10882772 + AluY SINE Alu 1 311 0 301 242 15 0 chr9 131388674 131388740 -10882704 + L1ME2 LINE L1 5175 5241 -905 280 209 35 12 chr9 131388795 131388881 -10882563 + L1ME2 LINE L1 5338 5425 -739 707 179 8 0 chr9 131388892 131389015 -10882429 + FLAM_C SINE Alu 1 124 -19 1050 260 54 76 chr9 131389016 131389451 -10881993 + L1ME2 LINE L1 5424 5844 -320 2156 91 0 7 chr9 131389451 131389738 -10881706 + AluSx SINE Alu 21 305 -7 1050 260 54 76 chr9 131389738 131389910 -10881534 + L1ME2 LINE L1 5844 6018 -146 2271 76 9 38 chr9 131389935 131390051 -10881393 + AluSx SINE Alu 1 119 -193 2137 114 0 22 chr9 131390051 131390366 -10881078 + AluY SINE Alu 1 308 -3 2271 76 9 38 chr9 131390366 131390564 -10880880 + AluSx SINE Alu 119 306 -6 2092 132 0 0 chr9 131390619 131390923 -10880521 - AluSq SINE Alu -8 305 2 928 144 84 0 chr9 131391198 131391365 -10880079 + AluSp SINE Alu 121 301 -12 302 361 29 43 chr9 131391376 131391584 -10879860 + L2 LINE L2 3098 3302 -11 1631 171 46 76 chr9 131391585 131392060 -10879384 + MLT1D LTR MaLR 1 461 -44 336 272 152 0 chr9 131392458 131392583 -10878861 + MIR3 SINE MIR 4 147 -61 283 366 24 16 chr9 131392807 131392930 -10878514 - MIR SINE MIR -52 210 87 313 289 123 18 chr9 131393176 131393290 -10878154 + MIR SINE MIR 16 141 -67 196 240 40 0 chr9 131393597 131393647 -10877797 - MIR SINE MIR -103 159 108 235 174 43 43 chr9 131393909 131393978 -10877466 - MIR3 SINE MIR -54 154 86 943 133 0 0 chr9 131394095 131394230 -10877214 + AluJo SINE Alu 1 135 -177 1856 161 0 7 chr9 131394230 131394529 -10876915 + AluJo SINE Alu 1 297 -15 499 130 0 0 chr9 131394915 131394984 -10876460 + AluJ/FLAM SINE Alu 11 79 -233 25 31 0 0 chr9 131395521 131395553 -10875891 + AT_rich Low_complexity Low_complexity 1 32 0 1260 147 118 0 chr9 131395999 131396210 -10875234 + MER46A DNA MER2_type 1 236 0 188 231 165 74 chr9 131396275 131396396 -10875048 - MIR3 SINE MIR -71 137 6 267 366 92 30 chr9 131398761 131398925 -10872519 + L2 LINE L2 3099 3272 0 207 0 0 0 chr9 131399036 131399059 -10872385 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 242 247 78 26 chr9 131399059 131399136 -10872308 - L2 LINE L2 -14 3258 3178 3429 69 8 6 chr9 131399610 131400105 -10871339 + LTR13 LTR ERVK 512 1007 0 695 70 0 0 chr9 131400105 131400191 -10871253 - AluS SINE Alu -226 86 1 193 300 96 100 chr9 131400191 131400451 -10870993 + L2 LINE L2 2687 2945 -369 859 141 0 22 chr9 131400539 131400674 -10870770 - FLAM_C SINE Alu -1 132 1 290 329 55 48 chr9 131400991 131401137 -10870307 + MIR3 SINE MIR 13 159 -49 265 255 31 94 chr9 131401399 131401499 -10869945 - MER113 DNA MER1_type? -219 302 217 2122 106 0 3 chr9 131401499 131401817 -10869627 - AluSq SINE Alu 0 318 2 265 255 31 94 chr9 131401817 131401907 -10869537 - MER113 DNA MER1_type? -304 217 123 1015 160 75 26 chr9 131401971 131402239 -10869205 + MER33 DNA MER1_type 44 324 0 1132 147 0 0 chr9 131402240 131402410 -10869034 - AluJo/FRAM SINE Alu -9 303 134 1491 148 0 8 chr9 131402410 131402653 -10868791 - AluSq SINE Alu -5 308 68 539 264 212 44 chr9 131402759 131403005 -10868439 - MLT1F LTR MaLR -65 477 274 1952 128 24 0 chr9 131403005 131403294 -10868150 + AluSx SINE Alu 1 296 -16 539 264 212 44 chr9 131403294 131403434 -10868010 - MLT1F LTR MaLR -268 274 26 24 0 0 0 chr9 131403435 131403459 -10867985 + AT_rich Low_complexity Low_complexity 1 24 0 931 204 130 78 chr9 131403463 131403747 -10867697 - AluJo SINE Alu 0 302 4 462 301 7 26 chr9 131404107 131404260 -10867184 - MIR3 SINE MIR -58 150 1 1844 120 25 4 chr9 131404326 131404625 -10866819 - AluJo SINE Alu 0 305 1 200 292 0 0 chr9 131404627 131404675 -10866769 - MIR SINE MIR -113 149 102 358 264 115 20 chr9 131405762 131405910 -10865534 + MIR SINE MIR 30 191 -71 795 112 0 0 chr9 131405911 131406018 -10865426 + AluJb SINE Alu 1 107 -205 1759 169 56 119 chr9 131406139 131406360 -10865084 - L1ME1 LINE L1 -224 5942 5709 1807 142 31 10 chr9 131406360 131406649 -10864795 - AluSx SINE Alu -17 295 1 1759 169 56 119 chr9 131406649 131406970 -10864474 - L1ME1 LINE L1 -457 5709 5443 2059 145 0 0 chr9 131406970 131407267 -10864177 - AluSx SINE Alu -13 299 3 1759 169 56 119 chr9 131407267 131407352 -10864092 - L1ME1 LINE L1 -723 5443 5354 2295 79 7 3 chr9 131407355 131407659 -10863785 - AluSc SINE Alu -4 305 1 294 29 0 0 chr9 131407659 131407694 -10863750 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1871 133 3 11 chr9 131407694 131407979 -10863465 - AluJb SINE Alu -29 283 1 972 176 0 28 chr9 131407981 131408163 -10863281 - AluJo SINE Alu -16 296 120 315 174 47 0 chr9 131408259 131408345 -10863099 - L1ME1 LINE L1 -864 5282 5193 2052 134 3 10 chr9 131408345 131408659 -10862785 - AluSx SINE Alu 0 312 1 514 335 62 48 chr9 131408704 131408976 -10862468 + L1ME LINE L1 5394 5669 -452 373 296 63 25 chr9 131409435 131409594 -10861850 + MIR3 SINE MIR 12 176 -32 2213 107 10 0 chr9 131409677 131409986 -10861458 - AluSx SINE Alu 0 312 1 2331 88 0 3 chr9 131409989 131410297 -10861147 - AluSq SINE Alu -6 307 1 458 318 94 69 chr9 131410327 131410689 -10860755 + L2 LINE L2 2726 3126 -146 2253 77 3 10 chr9 131410689 131410986 -10860458 - AluSx SINE Alu -17 295 1 458 318 94 69 chr9 131410986 131411109 -10860335 + L2 LINE L2 3126 3244 -28 2734 159 37 21 chr9 131411126 131411643 -10859801 - MER21A LTR ERV1 -39 892 368 758 137 61 91 chr9 131411642 131411702 -10859742 - MER21A LTR ERV1 -670 261 201 * 4079 33 2 37 chr9 131411702 131412214 -10859230 + L1PA3 LINE L1 5662 6155 0 758 137 61 91 chr9 131412214 131412231 -10859213 - MER21A LTR ERV1 -730 201 185 1867 157 3 0 chr9 131412231 131412517 -10858927 + AluJo SINE Alu 5 291 -21 758 137 61 91 chr9 131412517 131412635 -10858809 - MER21A LTR ERV1 -746 185 71 1970 128 17 0 chr9 131412988 131413278 -10858166 - AluSx SINE Alu -17 295 1 1654 181 0 13 chr9 131413280 131413579 -10857865 - AluJb SINE Alu -17 295 1 320 217 78 61 chr9 131413628 131413743 -10857701 - MIR3 SINE MIR -86 122 6 237 279 0 0 chr9 131414900 131414961 -10856483 + MIR SINE MIR 88 148 -60 496 303 85 62 chr9 131415221 131415643 -10855801 + L2 LINE L2 2841 3272 0 195 287 162 24 chr9 131415654 131415821 -10855623 + L2 LINE L2 2917 3106 -166 320 227 64 48 chr9 131416068 131416196 -10855248 - MIR3 SINE MIR -47 161 36 210 275 308 22 chr9 131416177 131416307 -10855137 + MIR SINE MIR 28 120 -142 * 2215 94 3 7 chr9 131416307 131416605 -10854839 + AluSx SINE Alu 1 297 -15 210 275 308 22 chr9 131416605 131416656 -10854788 + MIR SINE MIR 120 261 -1 394 276 53 26 chr9 131417094 131417246 -10854198 - MIR SINE MIR 0 262 107 218 259 35 17 chr9 131417531 131417589 -10853855 + MIR SINE MIR 116 174 -88 186 43 0 0 chr9 131418021 131418044 -10853400 + (CCCCG)n Simple_repeat Simple_repeat 2 24 0 264 256 8 72 chr9 131418053 131418178 -10853266 + C-rich Low_complexity Low_complexity 3 119 0 1313 157 75 55 chr9 131418313 131418606 -10852838 - AluJb SINE Alu -13 299 1 477 80 40 0 chr9 131418759 131418834 -10852610 - AluSp SINE Alu -10 303 226 1571 62 5 0 chr9 131418834 131419026 -10852418 - AluSp SINE Alu -120 193 1 581 286 81 32 chr9 131419050 131419298 -10852146 + MIR SINE MIR 2 261 -1 2451 27 40 0 chr9 131419371 131419668 -10851776 + AluY SINE Alu 1 309 -2 2460 71 0 0 chr9 131421457 131421766 -10849678 + AluSc SINE Alu 1 309 0 911 211 30 65 chr9 131422552 131422784 -10848660 + MER58A DNA MER1_type 1 224 0 2436 84 0 0 chr9 131422826 131423136 -10848308 + AluSg SINE Alu 1 310 0 232 326 83 15 chr9 131423138 131423270 -10848174 + MER5A DNA MER1_type 43 183 -6 2191 79 21 3 chr9 131423296 131423586 -10847858 + AluSq SINE Alu 1 295 -18 1908 113 58 4 chr9 131423604 131423878 -10847566 + AluSp SINE Alu 9 297 -16 1783 136 0 31 chr9 131423879 131424166 -10847278 - AluJb SINE Alu -34 278 1 2197 86 0 16 chr9 131424395 131424699 -10846745 + AluY SINE Alu 1 299 -12 885 199 194 0 chr9 131424705 131424921 -10846523 + AluSx SINE Alu 4 261 -51 338 310 22 30 chr9 131426554 131426786 -10844658 - L1MC/D LINE L1 -2053 5755 5526 2097 126 3 0 chr9 131426805 131427098 -10844346 + AluSq SINE Alu 1 294 -19 28 71 0 0 chr9 131427109 131427165 -10844279 + AT_rich Low_complexity Low_complexity 1 56 0 326 250 100 25 chr9 131427215 131427415 -10844029 - L1MC/D LINE L1 -2329 5479 5265 258 250 250 0 chr9 131428433 131428525 -10842919 + MER5A DNA MER1_type 74 188 -1 279 269 106 0 chr9 131428582 131428686 -10842758 - L2 LINE L2 -17 3255 3141 758 298 36 0 chr9 131429842 131430090 -10841354 + MIR SINE MIR 4 260 -2 297 347 42 7 chr9 131430172 131430316 -10841128 + MER5A DNA MER1_type 40 188 -1 228 103 0 0 chr9 131430960 131430999 -10840445 + L1MB3 LINE L1 1642 1680 -4704 1482 247 13 5 chr9 131431004 131431381 -10840063 + L1MB3 LINE L1 2680 3059 -3323 2763 171 23 27 chr9 131431487 131432148 -10839296 + L1MB3 LINE L1 3409 4066 -2316 670 152 6 84 chr9 131432162 131432340 -10839104 + L1MB3 LINE L1 5803 5966 -441 978 157 11 5 chr9 131432356 131432547 -10838897 + L1MB3 LINE L1 5992 6183 0 2315 177 20 16 chr9 131432547 131432991 -10838453 + L1MB3 LINE L1 5970 6417 -2 681 233 67 17 chr9 131433173 131433353 -10838091 - MER5A DNA MER1_type 0 189 1 765 147 22 0 chr9 131435517 131435676 -10835768 - L1MA4 LINE L1 0 6300 6162 8058 62 10 12 chr9 131435676 131436685 -10834759 + LTR13 LTR ERVK 1 1007 0 217 100 0 0 chr9 131437222 131437252 -10834192 + MIR SINE MIR 116 145 -117 26 0 0 0 chr9 131438400 131438426 -10833018 + GC_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr9 131438546 131438568 -10832876 + GC_rich Low_complexity Low_complexity 1 22 0 272 283 18 53 chr9 131438792 131438905 -10832539 + MIR SINE MIR 68 176 -86 2029 95 25 41 chr9 131438937 131439254 -10832190 - AluJb SINE Alu 0 312 1 2241 63 3 20 chr9 131439275 131439574 -10831870 - AluSq SINE Alu -19 294 1 753 217 0 14 chr9 131440106 131440249 -10831195 + FRAM SINE Alu 29 169 -7 212 289 134 69 chr9 131440837 131441069 -10830375 + L2 LINE L2 3009 3255 -17 507 308 27 0 chr9 131441120 131441266 -10830178 + MIR SINE MIR 2 151 -111 2279 73 0 3 chr9 131441778 131442065 -10829379 + AluSx SINE Alu 12 297 -15 2146 111 3 0 chr9 131442605 131442902 -10828542 + AluSx SINE Alu 1 298 -14 447 260 20 93 chr9 131443917 131444121 -10827323 - MLT1K LTR MaLR -31 557 369 2159 131 0 0 chr9 131444401 131444713 -10826731 - AluSx SINE Alu 0 312 1 1799 152 13 19 chr9 131446303 131446613 -10824831 - AluJo SINE Alu -4 308 1 521 258 6 15 chr9 131447200 131447425 -10824019 + CT-rich Low_complexity Low_complexity 1 222 0 313 231 12 0 chr9 131447354 131447527 -10823917 + (TCCA)n Simple_repeat Simple_repeat 2 176 0 * 389 237 16 48 chr9 131447552 131447813 -10823631 + (TCCA)n Simple_repeat Simple_repeat 1 252 0 1611 119 11 11 chr9 131448075 131448335 -10823109 - AluSx SINE Alu -52 260 1 1825 165 0 0 chr9 131448338 131448635 -10822809 - AluJb SINE Alu -15 297 1 1082 221 0 0 chr9 131448636 131448844 -10822600 - L1MD3 LINE L1 -1104 6891 6684 380 216 52 31 chr9 131448884 131448981 -10822463 - MLT1F LTR MaLR -467 75 1 254 336 81 13 chr9 131449064 131449213 -10822231 + L1MC4a LINE L1 5805 5963 -1845 2135 105 3 13 chr9 131449213 131449517 -10821927 + AluSp SINE Alu 1 301 -12 1032 146 0 0 chr9 131449520 131449678 -10821766 + AluJo/FRAM SINE Alu 137 294 -18 2315 99 0 0 chr9 131449795 131450099 -10821345 + AluSg SINE Alu 1 304 -6 798 176 12 42 chr9 131450320 131450334 -10821110 + AluSg/x SINE Alu 121 134 -178 2111 97 3 0 chr9 131450334 131450623 -10820821 + AluSp SINE Alu 1 290 -23 798 176 12 42 chr9 131450623 131450773 -10820671 + AluSg/x SINE Alu 134 280 -32 189 0 0 0 chr9 131450773 131450794 -10820650 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 23 0 0 0 chr9 131451510 131451533 -10819911 + AT_rich Low_complexity Low_complexity 1 23 0 508 271 57 1 chr9 131452678 131452830 -10818614 - MIR SINE MIR -62 146 20 2260 101 0 0 chr9 131453831 131454127 -10817317 + AluSg SINE Alu 1 296 -14 310 316 92 7 chr9 131455263 131455415 -10816029 + MIR3 SINE MIR 41 205 -3 1253 126 0 0 chr9 131455619 131455801 -10815643 + AluSg/x SINE Alu 127 308 -2 21 36 0 0 chr9 131455893 131455921 -10815523 + AT_rich Low_complexity Low_complexity 1 28 0 249 167 0 0 chr9 131456079 131456121 -10815323 - LTR54 LTR ERV1 -67 443 402 1417 122 0 0 chr9 131456190 131456386 -10815058 + AluSq SINE Alu 1 196 -117 963 299 122 10 chr9 131456897 131457405 -10814039 + L2 LINE L2 2148 2712 -602 1120 131 0 0 chr9 131457408 131457568 -10813876 + AluSg/x SINE Alu 135 294 -18 2315 100 0 0 chr9 131457614 131457925 -10813519 + AluSx SINE Alu 1 311 -1 1878 141 17 0 chr9 131458180 131458479 -10812965 - AluSx SINE Alu -8 304 1 405 327 64 9 chr9 131459051 131459271 -10812173 + L1ME4a LINE L1 5595 5826 -295 412 208 0 0 chr9 131459348 131459457 -10811987 + L1M4 LINE L1 4303 4411 -1735 186 241 37 0 chr9 131459723 131459777 -10811667 + MIR SINE MIR 76 131 -77 398 363 46 23 chr9 131460562 131460824 -10810620 + L1M4 LINE L1 4574 4841 -1305 1220 150 0 19 chr9 131460843 131461056 -10810388 + AluSg/x SINE Alu 85 293 -19 318 314 21 89 chr9 131461080 131461242 -10810202 + L1M4 LINE L1 4888 5059 -1087 1627 160 51 3 chr9 131461242 131461536 -10809908 + AluJo SINE Alu 1 308 -4 1759 174 17 0 chr9 131461539 131461832 -10809612 + AluJb SINE Alu 1 298 -14 2158 75 0 37 chr9 131461835 131462152 -10809292 + AluSg SINE Alu 1 306 0 318 314 21 89 chr9 131462152 131462317 -10809127 + L1M4 LINE L1 5063 5201 -945 2141 92 13 10 chr9 131462780 131463083 -10808361 - AluSx SINE Alu -8 304 1 241 300 122 38 chr9 131463185 131463505 -10807939 - L1ME4a LINE L1 -119 6002 5656 452 271 21 28 chr9 131463718 131463862 -10807582 + Charlie8 DNA MER1_type 26 168 -2249 195 313 48 0 chr9 131464943 131465026 -10806418 - MIR SINE MIR -23 239 153 1957 121 24 3 chr9 131465030 131465328 -10806116 - AluSx SINE Alu -8 304 1 1170 121 0 0 chr9 131465383 131465548 -10805896 - AluSg/x SINE Alu -14 296 132 2088 104 14 0 chr9 131465548 131465871 -10805573 - AluSx SINE Alu 0 312 1 2207 108 3 7 chr9 131465873 131466178 -10805266 - AluSx SINE Alu -8 304 1 1274 257 61 26 chr9 131466178 131466556 -10804888 + MLT1E LTR MaLR 135 525 -68 1451 102 0 0 chr9 131466560 131466780 -10804664 - AluSq SINE Alu 0 315 96 1149 105 0 0 chr9 131466801 131466954 -10804490 - AluSq SINE Alu -160 153 1 225 145 13 145 chr9 131466954 131467030 -10804414 + MLT1E LTR MaLR 500 565 -2 1071 139 0 0 chr9 131567270 131567435 -10704009 + AluSg/x SINE Alu 140 304 -5 22 0 0 0 chr9 131567451 131567473 -10703971 + AT_rich Low_complexity Low_complexity 1 22 0 678 268 83 15 chr9 131568625 131568830 -10702614 - MIR SINE MIR -31 231 13 186 103 0 0 chr9 131568832 131568861 -10702583 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 295 248 119 28 chr9 131569280 131569389 -10702055 + L2 LINE L2 3180 3298 -15 364 282 91 91 chr9 131569901 131570121 -10701323 + L1 LINE L1 3087 3306 -2840 221 131 28 84 chr9 131570379 131570486 -10700958 + (CACAC)n Simple_repeat Simple_repeat 1 101 0 2226 88 3 7 chr9 131570860 131571157 -10700287 - AluSq SINE Alu -17 296 1 1067 153 0 0 chr9 131571165 131571328 -10700116 - AluSg/x SINE Alu -18 292 130 2496 51 0 0 chr9 131571330 131571626 -10699818 - AluY SINE Alu -15 296 1 467 310 6 25 chr9 131571643 131571801 -10699643 - L2 LINE L2 -1 3312 3158 398 257 42 47 chr9 131572001 131572184 -10699260 - MIR3 SINE MIR -49 159 6 714 181 0 42 chr9 131572325 131572469 -10698975 + MIR SINE MIR 12 149 -113 1178 184 121 53 chr9 131572470 131572752 -10698692 + AluJo SINE Alu 1 301 -1 435 189 0 85 chr9 131572752 131572858 -10698586 - AluS SINE Alu -215 97 1 636 208 0 0 chr9 131573126 131573232 -10698212 - FLAM_C SINE Alu -33 110 5 410 175 62 0 chr9 131573359 131573439 -10698005 - AluS SINE Alu -4 307 223 213 39 0 0 chr9 131574576 131574602 -10696842 + (C)n Simple_repeat Simple_repeat 1 26 0 34 24 0 0 chr9 131574707 131574748 -10696696 + GC_rich Low_complexity Low_complexity 1 41 0 206 224 35 52 chr9 131574847 131575021 -10696423 + (CCCG)n Simple_repeat Simple_repeat 3 173 0 * 224 250 8 39 chr9 131574895 131575023 -10696421 + (CCCCG)n Simple_repeat Simple_repeat 1 124 0 224 300 6 22 chr9 131574979 131575159 -10696285 + C-rich Low_complexity Low_complexity 2 178 0 * 298 214 11 62 chr9 131575052 131575230 -10696214 + (CCCG)n Simple_repeat Simple_repeat 4 172 0 22 56 0 0 chr9 131575251 131575287 -10696157 + GC_rich Low_complexity Low_complexity 1 36 0 55 16 0 0 chr9 131575315 131575377 -10696067 + GC_rich Low_complexity Low_complexity 1 62 0 2346 95 0 10 chr9 131675489 131675794 -10595650 - AluSx SINE Alu -10 302 1 2106 125 3 3 chr9 131675844 131676140 -10595304 - AluSx SINE Alu -13 299 4 2131 129 3 0 chr9 131676142 131676436 -10595008 - AluSx SINE Alu -14 298 4 2245 106 13 0 chr9 131676497 131676798 -10594646 + AluSx SINE Alu 1 305 -7 2143 85 17 31 chr9 131676847 131677141 -10594303 + AluSc SINE Alu 1 290 -19 2292 95 0 3 chr9 131677141 131677437 -10594007 + AluSg SINE Alu 1 295 -15 686 165 17 0 chr9 131677441 131677556 -10593888 - AluJb SINE Alu -194 118 2 319 251 85 132 chr9 131677765 131677846 -10593598 + MIR SINE MIR 35 118 -144 194 0 39 0 chr9 131677846 131677872 -10593572 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1989 120 3 14 chr9 131677874 131678158 -10593286 - AluSx SINE Alu -30 282 2 319 251 85 132 chr9 131678158 131678308 -10593136 + MIR SINE MIR 119 258 -4 1625 165 4 15 chr9 131678606 131678878 -10592566 + AluJo SINE Alu 42 310 -2 2132 132 7 0 chr9 131678888 131679191 -10592253 + AluSx SINE Alu 1 305 -7 636 92 0 0 chr9 131679212 131679299 -10592145 - AluSg/x SINE Alu -13 296 210 1322 160 5 5 chr9 131679403 131679609 -10591835 - AluSq SINE Alu -107 206 1 2291 85 0 0 chr9 131679618 131679924 -10591520 - AluY SINE Alu 0 306 1 192 77 0 0 chr9 131679993 131680019 -10591425 + (A)n Simple_repeat Simple_repeat 1 26 0 1539 159 0 4 chr9 131680052 131680285 -10591159 + AluSg/x SINE Alu 75 306 -6 1813 114 0 41 chr9 131680291 131680562 -10590882 + AluSq SINE Alu 1 260 -53 2366 100 7 0 chr9 131680834 131681144 -10590300 - AluSp SINE Alu -1 312 1 1863 107 0 0 chr9 131681225 131681467 -10589977 - AluSq SINE Alu 0 313 72 2318 84 0 17 chr9 131681574 131681872 -10589572 - AluY SINE Alu -18 293 1 2499 71 0 0 chr9 131681875 131682171 -10589273 - AluY SINE Alu -15 296 1 242 334 139 13 chr9 131682823 131683125 -10588319 + L2 LINE L2 1393 1732 -1582 288 327 87 4 chr9 131683226 131683355 -10588089 + L2 LINE L2 2006 2123 -1191 2262 58 13 65 chr9 131683355 131683664 -10587780 - AluY SINE Alu -18 293 1 288 327 87 4 chr9 131683664 131683788 -10587656 + L2 LINE L2 2123 2280 -1034 1744 168 7 33 chr9 131684173 131684477 -10586967 - AluJb SINE Alu -16 296 1 1754 200 0 3 chr9 131684666 131684976 -10586468 + AluJo SINE Alu 1 309 -3 722 280 73 9 chr9 131685010 131685294 -10586150 - L1MC4a LINE L1 -297 5824 5569 2154 78 63 0 chr9 131685790 131686074 -10585370 + AluSc SINE Alu 1 302 -7 816 170 85 0 chr9 131686450 131686591 -10584853 + FRAM SINE Alu 3 155 -21 243 245 19 0 chr9 131686591 131686644 -10584800 + GA-rich Low_complexity Low_complexity 2 55 0 312 285 104 28 chr9 131687335 131687479 -10583965 - HAL1 LINE L1 -34 2473 2319 2050 142 3 3 chr9 131687488 131687790 -10583654 - AluJb SINE Alu -5 307 6 634 209 0 37 chr9 131687807 131687941 -10583503 - FLAM_C SINE Alu -4 129 1 756 133 0 0 chr9 131687957 131688077 -10583367 - AluSg/x SINE Alu -1 308 189 1527 140 21 21 chr9 131688077 131688312 -10583132 + AluSx SINE Alu 57 291 -21 1671 105 9 4 chr9 131689127 131689356 -10582088 + AluSg/x SINE Alu 69 298 -14 251 167 0 0 chr9 131689357 131689399 -10582045 + MIR SINE MIR 2 43 -219 204 67 0 0 chr9 131689413 131689443 -10582001 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2237 93 7 0 chr9 131689457 131689736 -10581708 - AluSq SINE Alu -32 281 1 2473 91 0 7 chr9 131689765 131690074 -10581370 - AluSp SINE Alu -5 308 2 1752 168 44 17 chr9 131690075 131690373 -10581071 - AluJb SINE Alu -6 306 1 832 235 25 10 chr9 131690376 131690572 -10580872 + MIR SINE MIR 64 262 0 1723 104 0 0 chr9 131691113 131691334 -10580110 + AluSg SINE Alu 14 234 -76 451 336 46 42 chr9 131691442 131691683 -10579761 + L2 LINE L2 2258 2499 -815 2438 71 0 0 chr9 131691873 131692168 -10579276 + AluY SINE Alu 1 295 -16 2303 91 10 26 chr9 131692172 131692481 -10578963 + AluSp SINE Alu 1 304 -9 2148 128 7 0 chr9 131692491 131692787 -10578657 + AluSx SINE Alu 1 298 -14 2295 119 0 0 chr9 131692796 131693098 -10578346 + AluSx SINE Alu 2 303 -9 2192 84 0 25 chr9 131693455 131693741 -10577703 - AluSx SINE Alu -3 309 31 2228 101 13 22 chr9 131694387 131694703 -10576741 + AluSq SINE Alu 1 313 0 2077 143 0 3 chr9 131695331 131695631 -10575813 + AluSx SINE Alu 1 299 -13 243 336 107 7 chr9 131695698 131695847 -10575597 + MIR SINE MIR 2 165 -97 2509 75 0 3 chr9 131695958 131696263 -10575181 - AluSc SINE Alu -5 304 1 858 145 72 22 chr9 131696337 131696475 -10574969 + AluJo SINE Alu 1 145 -167 2327 87 0 32 chr9 131696476 131696785 -10574659 + AluSq SINE Alu 1 299 -14 2111 111 24 3 chr9 131696785 131697073 -10574371 + AluSq SINE Alu 1 294 -19 2157 139 7 3 chr9 131697257 131697560 -10573884 - AluSx SINE Alu -8 304 1 258 314 23 12 chr9 131698008 131698094 -10573350 - MIR3 SINE MIR -18 190 104 213 275 0 58 chr9 131698202 131698271 -10573173 - L2 LINE L2 -5 3267 3203 2383 94 0 3 chr9 131698401 131698708 -10572736 + AluSq SINE Alu 6 311 -2 1849 170 0 22 chr9 131698747 131699059 -10572385 + AluJb SINE Alu 1 305 -7 910 123 8 0 chr9 131699607 131699737 -10571707 + AluSq/x SINE Alu 1 131 -181 1577 98 5 0 chr9 131699741 131699945 -10571499 + AluSx SINE Alu 1 205 -107 774 229 0 0 chr9 131699946 131700086 -10571358 - FRAM SINE Alu -36 140 1 1660 141 83 11 chr9 131700198 131700475 -10570969 + AluJb SINE Alu 1 297 -15 1744 147 13 57 chr9 131701152 131701452 -10569992 + AluJo SINE Alu 1 287 -25 1571 148 0 112 chr9 131703761 131703919 -10567525 + AluJo SINE Alu 1 102 -200 1466 107 48 15 chr9 131703919 131704125 -10567319 + AluSg/x SINE Alu 82 294 -16 1571 148 0 112 chr9 131704125 131704305 -10567139 + AluJo SINE Alu 102 301 -1 362 238 111 32 chr9 131704321 131704447 -10566997 + MIR3 SINE MIR 20 155 -53 2296 95 0 13 chr9 131704632 131704937 -10566507 + AluSg SINE Alu 3 303 -7 364 241 16 147 chr9 131705030 131705143 -10566301 - MER91B DNA MER1_type -10 180 100 367 123 18 0 chr9 131705143 131705200 -10566244 + U7 snRNA snRNA 2 59 -4 364 241 16 147 chr9 131705200 131705277 -10566167 - MER91B DNA MER1_type -90 100 15 907 151 0 0 chr9 131705478 131705604 -10565840 + FLAM_C SINE Alu 1 126 -17 33 25 0 0 chr9 131705604 131705644 -10565800 + AT_rich Low_complexity Low_complexity 1 40 0 1571 176 23 56 chr9 131706311 131706465 -10564979 + AluJb SINE Alu 1 142 -170 2496 77 0 3 chr9 131706465 131706776 -10564668 + AluY SINE Alu 1 310 -1 1571 176 23 56 chr9 131706776 131706927 -10564517 + AluJb SINE Alu 142 296 -16 1233 147 26 202 chr9 131707099 131707344 -10564100 + L1MC4 LINE L1 7637 7755 -287 2276 99 14 0 chr9 131707344 131707636 -10563808 - AluSx SINE Alu -16 296 1 1233 147 26 202 chr9 131707636 131707880 -10563564 + L1MC4 LINE L1 7755 8040 -2 285 185 19 0 chr9 131708161 131708215 -10563229 - MLT2B1 LTR ERVL -162 358 304 743 465 84 0 chr9 131708274 131708547 -10562897 - AluSg SINE Alu -4 296 1 970 204 11 0 chr9 131708547 131708723 -10562721 + AluSg/x SINE Alu 118 295 -15 2092 113 7 3 chr9 131708737 131709020 -10562424 + AluSq SINE Alu 11 294 -19 2238 115 0 29 chr9 131709024 131709337 -10562107 + AluSc SINE Alu 1 304 -5 2366 79 7 13 chr9 131709356 131709659 -10561785 + AluSq SINE Alu 5 305 -8 808 186 21 14 chr9 131709725 131709870 -10561574 + FRAM SINE Alu 1 146 -30 1993 131 0 39 chr9 131709872 131710037 -10561407 - AluSx SINE Alu -13 299 129 1876 82 4 27 chr9 131710037 131710209 -10561235 - AluSc SINE Alu -5 304 129 2634 51 0 6 chr9 131710209 131710522 -10560922 - AluY SINE Alu 0 311 1 2325 69 10 0 chr9 131710525 131710839 -10560605 - AluY SINE Alu 0 311 1 1876 82 4 27 chr9 131710839 131710918 -10560526 - AluSc SINE Alu -182 127 55 1993 131 0 39 chr9 131710918 131711057 -10560387 - AluSx SINE Alu -183 129 7 296 100 0 0 chr9 131711137 131711177 -10560267 + LTR56 LTR ERV1 349 388 -57 2350 70 11 0 chr9 131711315 131711602 -10559842 + AluY SINE Alu 1 290 -21 369 346 40 0 chr9 131711616 131711818 -10559626 + L1ME LINE L1 5610 5819 -302 825 206 24 0 chr9 131711911 131712076 -10559368 - AluSg/x SINE Alu -9 303 135 2471 70 0 3 chr9 131712076 131712375 -10559069 - AluY SINE Alu -13 298 1 2351 97 3 0 chr9 131712376 131712674 -10558770 - AluSp SINE Alu -11 302 4 2294 108 3 16 chr9 131712689 131713003 -10558441 - AluY SINE Alu -1 310 1 1305 94 36 16 chr9 131713166 131713333 -10558111 - AluSq SINE Alu -12 301 128 1910 136 56 3 chr9 131713333 131713619 -10557825 - AluSx SINE Alu -11 301 1 1305 94 36 16 chr9 131713619 131713643 -10557801 - AluSq SINE Alu -185 128 106 1545 106 43 0 chr9 131713643 131713851 -10557593 - AluSx SINE Alu -95 217 1 1870 165 7 7 chr9 131714397 131714706 -10556738 - AluJb SINE Alu -1 311 3 2180 107 33 13 chr9 131714708 131715007 -10556437 - AluSq SINE Alu -8 305 1 194 362 32 0 chr9 131715007 131715101 -10556343 + L2 LINE L2 2956 3052 -261 205 256 78 22 chr9 131715102 131715192 -10556252 + L2 LINE L2 3219 3313 0 2137 123 0 3 chr9 131715236 131715537 -10555907 - AluSx SINE Alu -8 304 5 754 139 0 44 chr9 131715597 131715734 -10555710 + FLAM_C SINE Alu 1 131 -2 2359 107 0 0 chr9 131715797 131716107 -10555337 - AluSg SINE Alu 0 310 1 2185 141 0 0 chr9 131716244 131716548 -10554896 + AluSx SINE Alu 1 304 -8 2243 103 0 13 chr9 131716548 131716858 -10554586 + AluSg SINE Alu 1 307 -3 1017 115 7 0 chr9 131716858 131716997 -10554447 + AluSc SINE Alu 132 271 -38 636 187 7 71 chr9 131716998 131717153 -10554291 - AluJo SINE Alu -98 214 70 1308 99 5 95 chr9 131717258 131717480 -10553964 + AluSg/x SINE Alu 91 292 -18 367 94 0 0 chr9 131717480 131717533 -10553911 + MIR SINE MIR 99 151 -111 2593 49 3 0 chr9 131717533 131717841 -10553603 + AluY SINE Alu 1 309 -2 1322 92 5 22 chr9 131717841 131717852 -10553592 + AluSc SINE Alu 124 134 -175 2634 51 0 6 chr9 131717852 131718165 -10553279 + AluY SINE Alu 1 311 0 1322 92 5 22 chr9 131718165 131718337 -10553107 + AluSc SINE Alu 134 304 -5 870 207 6 0 chr9 131718340 131718504 -10552940 + FRAM SINE Alu 1 165 -1 808 186 21 14 chr9 131718504 131718649 -10552795 - FRAM SINE Alu -30 146 1 2326 87 10 3 chr9 131718715 131719014 -10552430 - AluSq SINE Alu -8 305 5 2360 120 0 0 chr9 131719036 131719345 -10552099 - AluSc SINE Alu 0 309 1 2092 113 7 3 chr9 131719349 131719632 -10551812 - AluSq SINE Alu -19 294 11 2076 80 0 0 chr9 131719780 131720031 -10551413 - AluSc SINE Alu -58 251 1 273 300 92 23 chr9 131720619 131720749 -10550695 + MIR SINE MIR 44 182 -80 342 0 0 0 chr9 131720849 131720887 -10550557 + (TG)n Simple_repeat Simple_repeat 2 39 0 183 42 0 0 chr9 131721122 131721146 -10550298 + (CTG)n Simple_repeat Simple_repeat 1 24 0 332 279 6 140 chr9 131722007 131722094 -10549350 + L2 LINE L2 2948 3045 -227 2376 88 10 0 chr9 131722094 131722390 -10549054 - AluSq SINE Alu -14 299 1 332 279 6 140 chr9 131722390 131722617 -10548827 + L2 LINE L2 3045 3220 -52 585 330 26 13 chr9 131723448 131723681 -10547763 - MIR SINE MIR -1 261 26 1464 103 31 0 chr9 131723872 131724095 -10547349 + MER30 DNA MER1_type 1 230 0 2592 72 0 0 chr9 131724194 131724498 -10546946 + AluY SINE Alu 1 304 -7 2028 137 17 0 chr9 131724512 131724804 -10546640 + AluSx SINE Alu 1 297 -15 252 278 93 9 chr9 131724813 131724921 -10546523 - MIR SINE MIR -4 258 142 401 69 0 0 chr9 131724925 131724983 -10546461 - Alu SINE Alu -5 297 240 2209 96 0 0 chr9 131725083 131725386 -10546058 + AluY SINE Alu 3 305 0 188 229 104 0 chr9 131725391 131725439 -10546005 - MIR SINE MIR -97 165 113 1075 168 0 77 chr9 131725770 131725990 -10545454 - AluJo SINE Alu -25 287 85 460 141 39 0 chr9 131725990 131726068 -10545376 - AluSg/x SINE Alu -62 248 168 523 103 0 26 chr9 131726070 131726148 -10545296 + AluJo/FRAM SINE Alu 213 288 -24 1291 252 47 68 chr9 131726191 131726342 -10545102 - L1ME3A LINE L1 -74 6096 5943 2340 122 0 0 chr9 131726342 131726654 -10544790 - AluSp SINE Alu -1 312 1 234 0 0 0 chr9 131726655 131726681 -10544763 + (TTA)n Simple_repeat Simple_repeat 3 28 0 2536 49 0 0 chr9 131726682 131726970 -10544474 - AluY SINE Alu -23 288 1 2191 125 0 3 chr9 131726972 131727269 -10544175 - AluSx SINE Alu -16 296 1 1291 252 47 68 chr9 131727269 131727386 -10544058 - L1ME3A LINE L1 -228 5942 5824 2455 84 0 0 chr9 131727386 131727684 -10543760 - AluSx SINE Alu -14 298 1 1291 252 47 68 chr9 131727684 131727979 -10543465 - L1ME3A LINE L1 -346 5824 5537 1929 131 7 4 chr9 131728085 131728359 -10543085 + AluSx SINE Alu 1 275 -37 2084 92 50 0 chr9 131728359 131728641 -10542803 - AluY SINE Alu -14 297 1 465 143 0 0 chr9 131728693 131728770 -10542674 + AluY SINE Alu 6 82 -228 2546 65 0 3 chr9 131728903 131729211 -10542233 - AluY SINE Alu -4 307 1 1306 77 0 0 chr9 131729241 131729397 -10542047 - AluSg/x SINE Alu -23 289 134 216 236 0 36 chr9 131729474 131729529 -10541915 + CT-rich Low_complexity Low_complexity 4 56 0 304 250 125 15 chr9 131731446 131731582 -10539862 + MIR SINE MIR 92 242 -20 196 268 259 0 chr9 131731723 131731835 -10539609 - MIR SINE MIR -15 247 107 1936 114 19 0 chr9 131731985 131732242 -10539202 + AluSx SINE Alu 1 263 -44 210 105 0 0 chr9 131732242 131732280 -10539164 + (CAA)n Simple_repeat Simple_repeat 3 40 0 340 195 236 0 chr9 131732744 131732867 -10538577 - MER112 DNA MER1_type -7 253 102 1517 175 59 30 chr9 131732925 131733228 -10538216 + AluJb SINE Alu 1 312 0 1497 72 0 6 chr9 131733321 131733501 -10537943 + AluSq SINE Alu 11 189 -124 2177 108 0 35 chr9 131733560 131733874 -10537570 + AluSx SINE Alu 1 303 -9 725 201 7 7 chr9 131733959 131734113 -10537331 - FRAM SINE Alu -11 165 12 2144 102 20 3 chr9 131734170 131734463 -10536981 + AluSx SINE Alu 1 298 -14 314 258 82 10 chr9 131734822 131734919 -10536525 - MIR SINE MIR -57 151 48 22 56 0 0 chr9 131735270 131735306 -10536138 + GC_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr9 131735719 131735758 -10535686 + GC_rich Low_complexity Low_complexity 1 39 0 2289 70 13 41 chr9 131737751 131738067 -10533377 + AluSx SINE Alu 1 307 -5 304 145 132 26 chr9 131738811 131738887 -10532557 + FLAM_A SINE Alu 49 132 -1 279 254 0 0 chr9 131739558 131739696 -10531748 + GA-rich Low_complexity Low_complexity 1 138 0 216 0 0 0 chr9 131740379 131740403 -10531041 + (T)n Simple_repeat Simple_repeat 1 24 0 605 193 104 28 chr9 131742368 131742611 -10528833 + Tigger7 DNA MER2_type 2236 2487 0 1079 218 27 37 chr9 131743020 131743318 -10528126 + AluJo SINE Alu 2 296 -6 2002 149 3 3 chr9 131743503 131743804 -10527640 - AluSx SINE Alu -11 301 1 2515 82 0 0 chr9 131743821 131744126 -10527318 - AluY SINE Alu -5 306 2 2473 73 0 19 chr9 131744250 131744567 -10526877 - AluY SINE Alu 0 311 1 2173 101 6 58 chr9 131744650 131744977 -10526467 - AluSg SINE Alu 0 310 1 1323 111 0 6 chr9 131745015 131745195 -10526249 - AluSq SINE Alu -134 179 1 246 148 0 0 chr9 131745799 131745853 -10525591 + (CGG)n Simple_repeat Simple_repeat 2 55 0 2276 100 23 3 chr9 131747562 131747862 -10523582 + AluSq SINE Alu 1 306 -7 186 309 96 0 chr9 131748093 131748187 -10523257 + MIR SINE MIR 150 252 -10 * 305 304 118 30 chr9 131748179 131748314 -10523130 - L2 LINE L2 -1 3312 3166 189 0 0 0 chr9 131748315 131748336 -10523108 + (TA)n Simple_repeat Simple_repeat 2 22 0 2373 109 0 0 chr9 131748497 131748799 -10522645 + AluSx SINE Alu 1 302 -10 2217 122 0 0 chr9 131748814 131749108 -10522336 + AluSx SINE Alu 1 294 -18 316 175 113 52 chr9 131750675 131750772 -10520672 - L2 LINE L2 0 3272 3170 383 319 97 37 chr9 131751360 131751824 -10519620 - L2 LINE L2 -3 3269 2698 416 259 53 8 chr9 131751969 131752100 -10519344 + MIR SINE MIR 13 149 -113 380 317 109 20 chr9 131752414 131752717 -10518727 - L2 LINE L2 -64 3249 2920 2233 103 3 0 chr9 131752986 131753297 -10518147 - AluSx SINE Alu 0 312 1 989 159 6 31 chr9 131753578 131753741 -10517703 - AluJo SINE Alu -7 295 137 1449 106 32 5 chr9 131753744 131753961 -10517483 - AluY SINE Alu -15 296 74 2388 87 0 0 chr9 131753971 131754282 -10517162 - AluY SINE Alu 0 311 1 788 126 0 70 chr9 131754282 131754416 -10517028 - AluJo SINE Alu -176 126 1 982 163 12 0 chr9 131754603 131754775 -10516669 - AluSg/x SINE Alu -5 307 134 2234 92 3 0 chr9 131754775 131755070 -10516374 - AluSq SINE Alu -16 297 2 233 289 22 22 chr9 131755142 131755232 -10516212 - MIR3 SINE MIR -26 182 93 185 200 40 40 chr9 131755314 131755364 -10516080 + L2 LINE L2 3223 3272 0 * 328 364 36 0 chr9 131755362 131755472 -10515972 + L2 LINE L2 3134 3247 -25 356 293 6 30 chr9 131755587 131755751 -10515693 - AluSp SINE Alu -11 292 133 186 43 0 0 chr9 131756772 131756795 -10514649 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 848 128 0 0 chr9 131756803 131756920 -10514524 - FLAM_C SINE Alu -15 118 2 777 258 96 27 chr9 131757141 131757392 -10514052 - L2 LINE L2 -145 3168 2887 1989 109 0 27 chr9 131757392 131757685 -10513759 + AluSx SINE Alu 14 298 -14 777 258 96 27 chr9 131757685 131757767 -10513677 - L2 LINE L2 -426 2887 2812 315 285 182 24 chr9 131758025 131758101 -10513343 + MIR SINE MIR 67 130 -132 2263 84 19 13 chr9 131758101 131758411 -10513033 + AluSx SINE Alu 1 312 0 315 285 182 24 chr9 131758411 131758499 -10512945 + MIR SINE MIR 130 257 -5 539 146 68 29 chr9 131758762 131758865 -10512579 + FLAM_C SINE Alu 30 136 -7 487 276 62 49 chr9 131759227 131759471 -10511973 + MIR SINE MIR 14 262 0 1753 167 7 0 chr9 131760264 131760564 -10510880 + AluJb SINE Alu 1 302 -10 2296 96 0 0 chr9 131760566 131760889 -10510555 + AluSq SINE Alu 1 323 0 2038 121 0 19 chr9 131761097 131761404 -10510040 + AluSx SINE Alu 1 301 -11 1230 91 0 0 chr9 131761409 131761574 -10509870 + AluSc SINE Alu 131 295 -14 2204 254 52 63 chr9 131761583 131761834 -10509610 - L1ME3A LINE L1 -36 6134 5882 1464 177 16 68 chr9 131761834 131762144 -10509300 + AluJo SINE Alu 1 294 -18 2197 79 3 52 chr9 131762148 131762476 -10508968 + AluSx SINE Alu 1 312 0 2204 254 52 63 chr9 131762476 131763034 -10508410 - L1ME3A LINE L1 -291 5879 5329 1998 134 0 10 chr9 131763037 131763335 -10508109 - AluJb SINE Alu -15 297 3 635 190 158 0 chr9 131763343 131763527 -10507917 - L1ME3A LINE L1 -961 5185 4973 304 327 18 18 chr9 131763530 131763640 -10507804 - L1M4 LINE L1 -975 5240 5131 2323 154 67 40 chr9 131763657 131764134 -10507310 - L1MB7 LINE L1 0 6184 5690 2011 66 66 0 chr9 131764134 131764408 -10507036 - AluY SINE Alu -19 292 1 2323 154 67 40 chr9 131764408 131764450 -10506994 - L1MB7 LINE L1 -494 5690 5651 244 266 0 0 chr9 131765345 131765409 -10506035 + (TG)n Simple_repeat Simple_repeat 2 65 0 874 173 0 0 chr9 131765750 131765883 -10505561 + FLAM_C SINE Alu 1 133 0 383 357 0 8 chr9 131766024 131766150 -10505294 - MIR SINE MIR -107 155 31 319 296 177 49 chr9 131767936 131767958 -10503486 - L2 LINE L2 -6 3266 3248 2050 113 17 0 chr9 131767958 131768250 -10503194 + AluSq SINE Alu 6 302 -11 319 296 177 49 chr9 131768250 131768595 -10502849 - L2 LINE L2 -24 3248 2852 400 246 100 0 chr9 131768805 131768915 -10502529 + MLT1G1 LTR MaLR 3 123 -472 330 151 104 19 chr9 131770269 131770375 -10501069 - L1ME4a LINE L1 -13 6108 5994 2209 101 3 0 chr9 131770516 131770812 -10500632 - AluSq SINE Alu -16 297 1 901 213 23 4 chr9 131770812 131771070 -10500374 - L1MEc LINE L1 -1645 4570 4308 2177 101 10 0 chr9 131771070 131771376 -10500068 - AluSg SINE Alu -1 309 1 2192 116 0 0 chr9 131771379 131771682 -10499762 - AluSx SINE Alu -9 303 1 418 218 9 78 chr9 131771682 131771908 -10499536 - L1MEc LINE L1 -2291 3924 2310 1255 193 59 0 chr9 131771918 131772157 -10499287 - AluJb SINE Alu -25 287 35 1986 125 0 35 chr9 131772165 131772507 -10498937 - AluSc SINE Alu 0 331 1 2105 118 3 0 chr9 131772508 131772805 -10498639 - AluSp SINE Alu -15 298 1 739 160 29 11 chr9 131772936 131773111 -10498333 + CT-rich Low_complexity Low_complexity 1 178 0 297 104 0 0 chr9 131773115 131773163 -10498281 - AluSx SINE Alu -3 298 251 1062 117 5 75 chr9 131773163 131773351 -10498093 - AluSx SINE Alu -124 188 14 341 239 43 43 chr9 131773351 131773462 -10497982 - L1MEc LINE L1 -4070 2326 2213 2490 55 0 3 chr9 131773462 131773773 -10497671 - AluY SINE Alu -1 310 1 341 239 43 43 chr9 131773773 131773799 -10497645 - L1MEc LINE L1 -4182 2214 2189 1797 159 0 25 chr9 131773800 131774120 -10497324 - AluSx SINE Alu 0 312 1 2044 114 0 29 chr9 131774120 131774426 -10497018 - AluSg SINE Alu -12 298 1 359 243 39 58 chr9 131774428 131774531 -10496913 - L1M4 LINE L1 -639 5539 5439 1072 146 70 5 chr9 131774536 131774735 -10496709 - AluJo SINE Alu -100 212 1 2114 113 7 0 chr9 131776710 131777003 -10494441 + AluSq SINE Alu 1 295 -18 989 165 11 22 chr9 131777012 131777194 -10494250 + AluJb SINE Alu 132 311 -1 418 322 56 30 chr9 131777287 131777482 -10493962 + L1ME LINE L1 5472 5677 -487 2050 141 0 0 chr9 131777503 131777809 -10493635 + AluSx SINE Alu 1 306 -6 1262 141 55 135 chr9 131777825 131777986 -10493458 + AluJo SINE Alu 1 124 -178 1982 113 17 14 chr9 131777986 131778278 -10493166 + AluSq SINE Alu 1 293 -20 1262 141 55 135 chr9 131778278 131778443 -10493001 + AluJo SINE Alu 124 301 -1 1002 286 73 9 chr9 131778493 131778836 -10492608 + L1ME3A LINE L1 5504 5868 -302 2220 95 3 0 chr9 131778864 131779159 -10492285 + AluSq SINE Alu 1 296 -17 1889 112 28 24 chr9 131779159 131779446 -10491998 + AluSc SINE Alu 1 288 -21 2182 106 0 3 chr9 131779447 131779749 -10491695 + AluSg1 SINE Alu 2 302 -7 934 157 0 0 chr9 131779765 131779918 -10491526 + AluSg/x SINE Alu 154 306 -6 1659 174 13 7 chr9 131779923 131780227 -10491217 + AluJb SINE Alu 1 306 -6 2200 104 7 0 chr9 131780227 131780534 -10490910 + AluSx SINE Alu 1 309 -3 495 255 51 82 chr9 131780547 131780743 -10490701 + L1ME3A LINE L1 5975 6164 0 272 246 0 0 chr9 131781233 131781294 -10490150 + L3b LINE CR1 1342 1402 -181 2386 70 0 3 chr9 131783046 131783345 -10488099 - AluY SINE Alu -13 298 1 1631 164 0 71 chr9 131784035 131784111 -10487333 + AluJb SINE Alu 1 81 -231 2319 87 3 3 chr9 131784111 131784422 -10487022 - AluY SINE Alu 0 311 1 1631 164 0 71 chr9 131784422 131784493 -10486951 + AluJb SINE Alu 81 155 -157 2261 96 0 0 chr9 131784493 131784794 -10486650 + AluSg SINE Alu 1 301 -9 1631 164 0 71 chr9 131784794 131784958 -10486486 + AluJb SINE Alu 155 290 -22 2440 71 0 0 chr9 131784958 131785269 -10486175 + AluY SINE Alu 1 311 0 1631 164 0 71 chr9 131785269 131785291 -10486153 + AluJb SINE Alu 290 312 0 2439 71 0 0 chr9 131785299 131785610 -10485834 + AluY SINE Alu 1 311 0 396 222 9 37 chr9 131785613 131785640 -10485804 - L1ME4a LINE L1 -60 6061 6035 2297 99 3 0 chr9 131785640 131785952 -10485492 + AluSq SINE Alu 1 313 0 396 222 9 37 chr9 131785952 131786032 -10485412 - L1ME4a LINE L1 -86 6035 5957 2138 117 0 13 chr9 131786358 131786494 -10484950 + AluSx SINE Alu 1 137 -175 2256 76 3 7 chr9 131786494 131786798 -10484646 + AluY SINE Alu 1 303 -8 2138 117 0 13 chr9 131786798 131786977 -10484467 + AluSx SINE Alu 137 312 0 780 236 55 6 chr9 131787697 131787862 -10483582 + FAM SINE Alu 1 173 -2 228 287 125 49 chr9 131787910 131788044 -10483400 + MER5A DNA MER1_type 4 147 -31 801 149 0 22 chr9 131788109 131788243 -10483201 + FLAM_C SINE Alu 1 131 -12 2081 142 0 0 chr9 131788248 131788558 -10482886 + AluSx SINE Alu 3 312 0 1715 145 53 3 chr9 131788581 131788864 -10482580 + AluSg SINE Alu 1 297 -13 2334 80 0 6 chr9 131788866 131789179 -10482265 + AluY SINE Alu 1 311 0 1101 165 21 51 chr9 131789195 131789356 -10482088 - AluJb SINE Alu -14 298 145 2136 106 3 0 chr9 131789356 131789649 -10481795 - AluSq SINE Alu -19 294 1 1101 165 21 51 chr9 131789649 131789724 -10481720 - AluJb SINE Alu -167 145 69 2120 50 60 3 chr9 131789764 131790046 -10481398 - AluY SINE Alu -13 298 1 1694 135 17 27 chr9 131790257 131790554 -10480890 + AluJb SINE Alu 12 305 -7 1648 120 0 4 chr9 131790567 131790809 -10480635 + AluSx SINE Alu 55 295 -17 2114 117 3 0 chr9 131790811 131791109 -10480335 + AluSx SINE Alu 1 299 -13 1332 174 11 44 chr9 131791133 131791438 -10480006 - AluJb SINE Alu 0 312 31 1822 143 7 20 chr9 131791455 131791755 -10479689 - AluJo SINE Alu -16 296 1 23 33 0 0 chr9 131792631 131792661 -10478783 + GC_rich Low_complexity Low_complexity 1 30 0 1630 133 10 19 chr9 131793035 131793343 -10478101 - AluJb SINE Alu 0 312 8 2288 50 7 7 chr9 131793350 131793648 -10477796 - AluY SINE Alu -13 298 1 470 108 0 0 chr9 131793648 131793713 -10477731 - Alu SINE Alu -10 302 238 2326 50 3 38 chr9 131793740 131794057 -10477387 - AluY SINE Alu -5 306 1 662 268 79 44 chr9 131794211 131794554 -10476890 - L2 LINE L2 -24 3289 2935 805 161 0 0 chr9 131794571 131794695 -10476749 + FRAM SINE Alu 18 141 -35 454 251 99 28 chr9 131794695 131794906 -10476538 - L2 LINE L2 -345 2969 2744 2311 88 0 0 chr9 131795238 131795546 -10475898 - AluY SINE Alu -3 308 1 2003 109 0 7 chr9 131795550 131795843 -10475601 - AluY SINE Alu -20 291 1 447 121 0 0 chr9 131795847 131795913 -10475531 - AluSq/x SINE Alu -180 133 68 * 678 162 0 0 chr9 131795912 131796017 -10475427 - AluSq/x SINE Alu -206 107 3 2086 117 0 7 chr9 131796031 131796330 -10475114 - AluSx SINE Alu -14 298 2 2173 92 7 0 chr9 131796345 131796638 -10474806 - AluSp SINE Alu -18 295 1 1035 176 0 0 chr9 131796638 131796808 -10474636 - AluSp SINE Alu -16 297 128 2364 99 0 0 chr9 131796813 131797126 -10474318 - AluSq SINE Alu 0 313 1 2170 115 0 6 chr9 131797333 131797645 -10473799 - AluSx SINE Alu -2 310 1 1992 119 7 0 chr9 131797740 131798026 -10473418 - AluSx SINE Alu -24 288 1 1226 109 22 6 chr9 131798441 131798624 -10472820 + AluSx SINE Alu 1 186 -126 701 61 10 40 chr9 131798628 131798727 -10472717 + AluSp SINE Alu 56 151 -162 198 0 0 0 chr9 131798727 131798749 -10472695 + (TA)n Simple_repeat Simple_repeat 2 23 0 544 318 6 0 chr9 131799046 131799216 -10472228 - MER5B DNA MER1_type -6 172 2 1234 207 14 21 chr9 131799251 131799263 -10472181 - AluJo SINE Alu -24 288 277 2167 107 17 0 chr9 131799263 131799563 -10471881 - AluSg SINE Alu -5 305 1 1844 132 0 0 chr9 131799566 131799839 -10471605 - AluSx SINE Alu -9 303 31 1234 207 14 21 chr9 131799839 131800112 -10471332 - AluJo SINE Alu -37 275 1 360 191 79 22 chr9 131800112 131800201 -10471243 - L1MB4 LINE L1 -39 6141 6048 1868 140 0 44 chr9 131800451 131800772 -10470672 - AluSx SINE Alu -5 307 1 192 97 0 0 chr9 131800778 131800809 -10470635 + (GCTTG)n Simple_repeat Simple_repeat 5 35 0 1934 140 7 0 chr9 131800863 131801149 -10470295 - AluSx SINE Alu -24 288 1 2133 97 10 3 chr9 131801524 131801822 -10469622 - AluSg SINE Alu -10 300 1 2126 113 7 0 chr9 131802122 131802431 -10469013 - AluSp SINE Alu -2 311 1 783 151 0 0 chr9 131802433 131802552 -10468892 - AluJb SINE Alu -170 142 24 1595 132 24 17 chr9 131804438 131804726 -10466718 + L1MB3 LINE L1 5848 6137 -46 2445 77 0 0 chr9 131804726 131805037 -10466407 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr9 131805465 131805488 -10465956 + AT_rich Low_complexity Low_complexity 1 23 0 1976 86 0 0 chr9 131805490 131805746 -10465698 - AluSg SINE Alu -54 256 1 1796 95 0 4 chr9 131806060 131806313 -10465131 + AluY SINE Alu 37 288 -23 471 78 0 0 chr9 131806313 131806377 -10465067 + (TA)n Simple_repeat Simple_repeat 2 65 0 1634 180 10 0 chr9 131806481 131806776 -10464668 + AluJb SINE Alu 7 304 -8 238 121 0 0 chr9 131806937 131806970 -10464474 - Alu SINE Alu -95 38 6 6429 141 34 30 chr9 131806974 131807169 -10464275 - Tigger1 DNA MER2_type -1239 1179 986 1917 139 23 0 chr9 131807169 131807472 -10463972 + AluSx SINE Alu 3 312 0 6429 141 34 30 chr9 131807472 131808032 -10463412 - Tigger1 DNA MER2_type -1432 986 430 1548 159 58 7 chr9 131808032 131808327 -10463117 - AluSq SINE Alu -3 310 1 1285 152 115 37 chr9 131808337 131808607 -10462837 - AluSx SINE Alu -21 291 1 6429 141 34 30 chr9 131808607 131809006 -10462438 - Tigger1 DNA MER2_type -1996 422 8 1752 142 7 33 chr9 131809097 131809400 -10462044 + AluJo SINE Alu 1 295 -17 573 249 130 0 chr9 131809400 131809585 -10461859 + MIR SINE MIR 42 250 -12 1452 161 7 43 chr9 131809993 131810132 -10461312 - AluJb SINE Alu -40 272 146 2227 94 0 7 chr9 131810132 131810431 -10461013 - AluSg SINE Alu -13 297 1 1452 161 7 43 chr9 131810431 131810571 -10460873 - AluJb SINE Alu -166 146 3 595 311 103 3 chr9 131810607 131810909 -10460535 + L2 LINE L2 2964 3295 -18 2113 65 58 4 chr9 131810910 131811187 -10460257 - AluY SINE Alu -19 292 1 1210 105 12 0 chr9 131811198 131811369 -10460075 - AluSg/x SINE Alu -6 306 134 2399 70 0 0 chr9 131811369 131811669 -10459775 - AluY SINE Alu -10 301 2 258 32 0 0 chr9 131811672 131811703 -10459741 + (TG)n Simple_repeat Simple_repeat 2 32 0 284 304 107 9 chr9 131811710 131811822 -10459622 - L2 LINE L2 -25 3247 3125 416 239 14 58 chr9 131812408 131812546 -10458898 - MLT1K LTR MaLR -289 299 168 248 374 66 11 chr9 131813114 131813296 -10458148 - MIR SINE MIR -34 228 37 443 226 99 91 chr9 131813322 131813366 -10458078 - MIR SINE MIR -19 243 201 2354 67 0 10 chr9 131813366 131813666 -10457778 + AluY SINE Alu 1 297 -14 443 226 99 91 chr9 131813666 131813710 -10457734 - MIR SINE MIR -61 201 159 2279 109 0 0 chr9 131813710 131814022 -10457422 + AluSx SINE Alu 1 312 0 443 226 99 91 chr9 131814022 131814153 -10457291 - MIR SINE MIR -103 159 21 2227 100 7 0 chr9 131814248 131814558 -10456886 - AluSx SINE Alu 0 312 1 469 119 60 24 chr9 131814565 131814649 -10456795 - FLAM_A SINE Alu -19 123 37 999 223 31 0 chr9 131814774 131815003 -10456441 - L1MB8 LINE L1 -320 5858 5623 2137 91 3 35 chr9 131815120 131815439 -10456005 - AluSc SINE Alu 0 309 1 1720 149 57 0 chr9 131815439 131815721 -10455723 - AluJb SINE Alu -14 298 1 2046 127 0 0 chr9 131815933 131816225 -10455219 + AluSx SINE Alu 1 292 -20 1706 153 32 4 chr9 131821851 131822132 -10449312 - AluSx SINE Alu -23 289 1 2087 113 0 3 chr9 131822209 131822500 -10448944 - AluSq SINE Alu -23 290 1 1699 161 23 13 chr9 131822531 131822667 -10448777 + AluSx SINE Alu 1 134 -178 2224 99 0 16 chr9 131822667 131822981 -10448463 + AluSq SINE Alu 1 309 -4 1699 161 23 13 chr9 131822981 131823149 -10448295 + AluSx SINE Alu 134 308 -4 1691 171 20 0 chr9 131826563 131826861 -10444583 + AluJo SINE Alu 1 304 -8 192 315 65 11 chr9 131828315 131828407 -10443037 + L2 LINE L2 3165 3261 -52 2217 83 16 19 chr9 131829560 131829872 -10441572 - AluSx SINE Alu -1 311 1 241 118 0 0 chr9 131829902 131829936 -10441508 + Alu SINE Alu 1 34 -268 954 128 0 45 chr9 131830613 131830769 -10440675 + AluSq/x SINE Alu 3 151 -162 321 111 0 0 chr9 131830769 131830814 -10440630 + AluSc SINE Alu 246 290 -9 1068 190 53 8 chr9 131831551 131831798 -10439646 + Charlie1a DNA MER1_type 75 332 -1123 * 2621 187 45 35 chr9 131831791 131832262 -10439182 + Charlie1a DNA MER1_type 483 963 -1798 1511 160 48 58 chr9 131832262 131832417 -10439027 - AluJb SINE Alu -12 290 138 1967 129 13 7 chr9 131832417 131832726 -10438718 - AluSx SINE Alu -1 311 1 1511 160 48 58 chr9 131832726 131832863 -10438581 - AluJb SINE Alu -164 138 1 2621 187 45 35 chr9 131832863 131832985 -10438459 + Charlie1a DNA MER1_type 963 1082 -373 2066 117 0 3 chr9 131833016 131833314 -10438130 - AluSx SINE Alu -15 297 1 364 261 52 9 chr9 131833326 131833441 -10438003 + Charlie1a DNA MER1_type 1336 1455 0 598 272 48 0 chr9 131833906 131834099 -10437345 + L1MC4a LINE L1 5621 5788 -333 2299 85 3 0 chr9 131834099 131834392 -10437052 - AluSx SINE Alu -18 294 1 598 272 48 0 chr9 131834392 131834426 -10437018 + L1MC4a LINE L1 5788 5819 -302 1898 152 0 0 chr9 131835558 131835848 -10435596 - AluJb SINE Alu -22 290 1 966 143 0 0 chr9 131839732 131839865 -10431579 + FLAM_C SINE Alu 1 133 0 1141 216 57 0 chr9 131839974 131840238 -10431206 + L1MB5 LINE L1 5896 6174 0 2148 71 7 20 chr9 131840252 131840548 -10430896 + AluSp SINE Alu 3 294 -19 2094 101 10 26 chr9 131840640 131840946 -10430498 - AluSg SINE Alu -9 301 1 2316 96 0 6 chr9 131841012 131841326 -10430118 - AluSq SINE Alu -1 312 1 683 221 0 8 chr9 131841347 131841474 -10429970 - AluSq/x SINE Alu -187 126 1 2020 106 7 7 chr9 131842072 131842386 -10429058 - AluSq SINE Alu 0 314 1 2197 122 0 0 chr9 131844100 131844412 -10427032 + AluSx SINE Alu 1 312 0 2188 106 0 10 chr9 131844523 131844834 -10426610 + AluSx SINE Alu 5 312 0 591 240 32 51 chr9 131845359 131845576 -10425868 + AluSq SINE Alu 101 313 0 723 171 39 8 chr9 131846194 131846323 -10425121 - AluJb SINE Alu -178 134 2 2002 121 3 0 chr9 131846506 131846796 -10424648 + AluSx SINE Alu 21 311 -1 1987 125 0 0 chr9 131846806 131847107 -10424337 + AluSx SINE Alu 1 301 0 189 0 0 0 chr9 131848062 131848083 -10423361 + (T)n Simple_repeat Simple_repeat 1 21 0 920 201 0 0 chr9 131848096 131848270 -10423174 + FAM SINE Alu 1 48 -1 2134 122 0 0 chr9 131848334 131848629 -10422815 + AluSx SINE Alu 1 295 -17 2235 85 3 0 chr9 131849525 131849818 -10421626 + AluSp SINE Alu 5 298 -15 2066 96 0 7 chr9 131849820 131850136 -10421308 + AluSg SINE Alu 1 314 0 883 188 12 18 chr9 131850231 131850401 -10421043 - AluJb SINE Alu -14 298 130 1308 211 26 53 chr9 131850465 131850585 -10420859 + AluJo SINE Alu 1 123 -179 2058 128 0 0 chr9 131850585 131850889 -10420555 - AluSx SINE Alu -8 304 1 1308 211 26 53 chr9 131850889 131851072 -10420372 + AluJo SINE Alu 123 296 -6 742 107 19 0 chr9 131851197 131851300 -10420144 + AluSg/x SINE Alu 96 200 -112 470 97 0 0 chr9 131851303 131851375 -10420069 + Alu SINE Alu 239 310 0 2013 123 7 0 chr9 131851378 131851680 -10419764 + AluSq SINE Alu 1 304 -9 331 120 0 0 chr9 131851680 131851730 -10419714 + AluSq SINE Alu 134 183 -120 2244 84 3 0 chr9 131851800 131852097 -10419347 + AluSx SINE Alu 1 298 -14 1385 118 0 5 chr9 131852097 131852301 -10419143 + AluSg/x SINE Alu 108 310 -2 1942 176 49 10 chr9 131852323 131852425 -10419019 + L1MB5 LINE L1 5769 5866 -308 1908 156 10 0 chr9 131852425 131852732 -10418712 + AluJb SINE Alu 1 310 -2 1942 176 49 10 chr9 131852732 131853020 -10418424 + L1MB5 LINE L1 5866 6174 0 1947 155 0 0 chr9 131853159 131853455 -10417989 + AluSx SINE Alu 1 296 -16 1979 98 64 10 chr9 131853459 131853756 -10417688 + AluSq SINE Alu 1 313 0 2035 126 7 3 chr9 131853837 131854139 -10417305 + AluSx SINE Alu 1 303 -9 2227 91 0 0 chr9 131855996 131856282 -10415162 + AluSg SINE Alu 1 286 -24 193 214 11 11 chr9 131856282 131856300 -10415144 + (TA)n Simple_repeat Simple_repeat 2 19 -71 1895 155 0 3 chr9 131856300 131856596 -10414848 + AluSx SINE Alu 1 295 -17 193 214 11 11 chr9 131856596 131856666 -10414778 + (TA)n Simple_repeat Simple_repeat 18 90 0 2332 71 7 10 chr9 131857818 131858127 -10413317 - AluY SINE Alu -3 308 1 296 204 0 0 chr9 131858613 131858667 -10412777 - MLT1C LTR MaLR -2 465 412 1220 213 92 77 chr9 131858667 131859113 -10412331 - MLT1C LTR MaLR -15 441 1 312 248 74 41 chr9 131859123 131859244 -10412200 - MLT1H LTR MaLR -3 546 422 352 208 129 0 chr9 131859435 131859536 -10411908 - MLT1H LTR MaLR -365 184 71 2211 93 3 7 chr9 131859779 131860080 -10411364 + AluSx SINE Alu 1 300 -12 341 260 67 10 chr9 131860371 131860475 -10410969 + L2 LINE L2 3141 3250 -22 242 282 76 8 chr9 131860868 131860999 -10410445 - L1ME4a LINE L1 -18 6103 5964 2300 82 3 0 chr9 131861637 131861942 -10409502 - AluSp SINE Alu -7 306 1 2060 106 0 0 chr9 131862081 131862394 -10409050 - AluSg SINE Alu 0 313 1 1438 151 35 64 chr9 131862396 131862707 -10408737 - AluJb SINE Alu -10 302 1 1287 145 0 72 chr9 131862805 131863040 -10408404 - AluSg/x SINE Alu -18 292 75 334 202 11 32 chr9 131863457 131863551 -10407893 - AluY SINE Alu -142 159 68 1094 143 0 62 chr9 131863555 131863765 -10407679 - AluJo SINE Alu -115 197 1 511 217 84 7 chr9 131863771 131863914 -10407530 - MER3 DNA MER1_type -55 154 1 287 328 86 48 chr9 131864206 131864312 -10407132 + L3 LINE CR1 1204 1305 -272 2417 70 0 0 chr9 131864312 131864611 -10406833 + AluY SINE Alu 1 299 -12 2220 84 40 0 chr9 131864611 131864910 -10406534 + AluY SINE Alu 1 311 0 287 328 86 48 chr9 131864910 131865070 -10406374 + L3 LINE CR1 1304 1481 -96 2224 94 3 0 chr9 131865578 131865876 -10405568 + AluSp SINE Alu 3 301 -12 1960 103 53 0 chr9 131865892 131866173 -10405271 + AluSg SINE Alu 1 296 -14 1066 121 0 0 chr9 131866174 131866348 -10405096 + AluSg/x SINE Alu 132 305 0 1597 172 4 0 chr9 131866807 131867068 -10404376 + AluJb SINE Alu 6 267 -45 2109 121 0 10 chr9 131867069 131867376 -10404068 + AluSx SINE Alu 4 307 -5 349 198 16 16 chr9 131867503 131867629 -10403815 + (TATG)n Simple_repeat Simple_repeat 3 128 0 1665 163 6 44 chr9 131867754 131868074 -10403370 + AluJo SINE Alu 1 308 -4 377 299 66 52 chr9 131868730 131868858 -10402586 - MIR SINE MIR -12 250 116 2075 114 0 44 chr9 131868858 131869175 -10402269 + AluSx SINE Alu 1 303 -9 377 299 66 52 chr9 131869175 131869257 -10402187 - MIR SINE MIR -146 116 37 7040 64 9 24 chr9 131870062 131871245 -10400199 + SVA Other Other 432 1386 0 1130 145 0 0 chr9 131871245 131871411 -10400033 + AluSc SINE Alu 127 292 -17 486 233 12 176 chr9 131871412 131871524 -10399920 - LTR41 LTR ERVL -229 544 492 3255 151 2 12 chr9 131871524 131872026 -10399418 + LOR1a LTR ERV1 1 497 0 486 233 12 176 chr9 131872026 131872158 -10399286 - LTR41 LTR ERVL -281 492 340 510 137 0 11 chr9 131872255 131872350 -10399094 - LTR41 LTR ERVL -679 94 1 374 197 98 10 chr9 131872384 131872420 -10399024 - L1MA7 LINE L1 -114 6066 6035 1590 156 0 60 chr9 131872420 131872614 -10398830 - AluJo SINE Alu -7 305 134 1717 156 10 3 chr9 131872614 131872903 -10398541 + AluJb SINE Alu 1 291 -21 1590 156 0 60 chr9 131872903 131873009 -10398435 - AluJo SINE Alu -178 134 23 374 197 98 10 chr9 131873009 131873380 -10398064 - L1MA7 LINE L1 -145 6035 5698 231 36 0 0 chr9 131873380 131873408 -10398036 + (TC)n Simple_repeat Simple_repeat 2 29 0 1559 149 35 21 chr9 131873408 131873696 -10397748 - AluJo SINE Alu -20 292 1 374 197 98 10 chr9 131873696 131873864 -10397580 - L1MA7 LINE L1 -481 5699 5492 655 133 0 9 chr9 131873869 131873974 -10397470 - AluSg/x SINE Alu 0 309 206 2071 121 0 0 chr9 131874051 131874349 -10397095 + AluSc SINE Alu 1 298 -11 1966 113 38 0 chr9 131874357 131874650 -10396794 + AluSq SINE Alu 1 304 -9 2077 118 3 0 chr9 131874673 131874969 -10396475 + AluSx SINE Alu 1 297 -15 1847 113 0 83 chr9 131874986 131875313 -10396131 + AluSq SINE Alu 2 301 -12 1597 123 123 11 chr9 131875313 131875582 -10395862 + AluSx SINE Alu 1 299 -13 1032 197 39 0 chr9 131875584 131875792 -10395652 + L1ME LINE L1 5360 5575 -589 2123 89 0 40 chr9 131875803 131876127 -10395317 - AluY SINE Alu 0 311 1 196 102 41 0 chr9 131876127 131876176 -10395268 + (TA)n Simple_repeat Simple_repeat 2 52 0 2154 99 13 10 chr9 131877309 131877611 -10393833 + AluSx SINE Alu 1 303 -9 245 220 0 99 chr9 131877616 131877707 -10393737 - MER5A DNA MER1_type -65 124 43 180 238 24 0 chr9 131878151 131878193 -10393251 + MER5A DNA MER1_type 147 189 0 185 0 40 0 chr9 131878798 131878823 -10392621 + (TA)n Simple_repeat Simple_repeat 2 27 0 249 317 67 0 chr9 131880396 131880500 -10390944 - L2 LINE L2 -49 3223 3113 2063 95 14 7 chr9 131880979 131881275 -10390169 + AluY SINE Alu 1 298 -13 328 216 194 15 chr9 131881596 131881730 -10389714 - MIR SINE MIR -6 256 99 1702 176 14 0 chr9 131881730 131882026 -10389418 - AluJo SINE Alu -12 300 1 186 267 40 80 chr9 131882077 131882152 -10389292 + L2 LINE L2 2900 2971 -343 187 180 281 34 chr9 131882208 131882297 -10389147 + L2 LINE L2 3136 3246 -26 2044 137 3 0 chr9 131882317 131882623 -10388821 + AluSx SINE Alu 1 307 -5 946 76 0 0 chr9 131882623 131882742 -10388702 + L1PA11 LINE L1 6056 6174 0 1777 123 49 14 chr9 131882857 131883141 -10388303 + AluSg SINE Alu 1 294 -16 2300 77 3 0 chr9 131883143 131883440 -10388004 + AluSp SINE Alu 2 299 -14 1859 183 17 55 chr9 131883454 131883750 -10387694 + MER67B LTR ERV1 239 516 -145 569 180 107 16 chr9 131883750 131883872 -10387572 + FLAM_A SINE Alu 1 133 0 1859 183 17 55 chr9 131883872 131883996 -10387448 + MER67B LTR ERV1 516 643 -18 428 244 39 176 chr9 131884102 131884181 -10387263 - MLT1K LTR MaLR 0 588 500 2285 106 0 0 chr9 131884181 131884483 -10386961 + AluSx SINE Alu 1 302 -10 428 244 39 176 chr9 131884483 131884715 -10386729 - MLT1K LTR MaLR -88 500 320 584 214 30 0 chr9 131885156 131885287 -10386157 - MIR SINE MIR -71 191 57 193 308 31 15 chr9 131885409 131885474 -10385970 + MIR SINE MIR 85 150 -112 188 253 25 25 chr9 131887064 131887143 -10384301 + L2 LINE L2 1729 1807 -1507 2244 85 0 3 chr9 131890824 131891118 -10380326 + AluSg SINE Alu 1 293 -17 2077 117 0 10 chr9 131891118 131891426 -10380018 + AluSc SINE Alu 1 306 -3 213 39 0 0 chr9 131891875 131891901 -10379543 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 2055 87 0 58 chr9 131892264 131892575 -10378869 - AluSc SINE Alu -16 293 1 1881 97 41 0 chr9 131892575 131892843 -10378601 - AluSx SINE Alu -14 298 20 217 278 35 76 chr9 131892851 131892887 -10378557 - MIR SINE MIR -112 150 114 2265 93 3 6 chr9 131892887 131893199 -10378245 + AluSp SINE Alu 3 313 0 217 278 35 76 chr9 131893199 131893306 -10378138 - MIR SINE MIR -148 114 13 2022 143 0 0 chr9 131893689 131893997 -10377447 - AluSx SINE Alu -4 308 1 1883 131 31 0 chr9 131893997 131894288 -10377156 - AluJb SINE Alu -12 300 1 1449 190 81 0 chr9 131894297 131894581 -10376863 - AluJb SINE Alu -5 307 1 295 280 47 0 chr9 131894647 131894754 -10376690 - MIR SINE MIR -117 145 34 335 305 58 7 chr9 131896361 131896515 -10374929 - MIR3 SINE MIR -7 201 40 207 184 0 0 chr9 131897807 131897845 -10373599 + MIR SINE MIR 110 147 -61 2165 114 0 0 chr9 131898104 131898410 -10373034 + AluSx SINE Alu 1 306 -6 2179 89 0 0 chr9 131898415 131898695 -10372749 + AluSx SINE Alu 1 280 -32 2162 68 41 14 chr9 131898716 131899008 -10372436 + AluY SINE Alu 1 300 -11 2035 101 0 0 chr9 131899012 131899279 -10372165 + AluSp SINE Alu 5 271 -42 420 113 0 0 chr9 131899280 131899342 -10372102 + AluSp/q SINE Alu 240 301 -12 272 321 102 66 chr9 131899401 131899521 -10371923 + L2 LINE L2 2925 3039 -233 2292 92 0 3 chr9 131899521 131899824 -10371620 + AluSx SINE Alu 1 302 -10 272 321 102 66 chr9 131899824 131899977 -10371467 + L2 LINE L2 3039 3208 -64 197 213 0 43 chr9 131900038 131900085 -10371359 + L3 LINE CR1 1340 1384 -193 996 81 20 40 chr9 131900086 131900235 -10371209 + AluY SINE Alu 1 146 -165 486 272 0 0 chr9 131900275 131900378 -10371066 + AluJb SINE Alu 14 116 -196 717 133 66 158 chr9 131900478 131900535 -10370909 - AluJo SINE Alu -133 179 118 2151 98 3 3 chr9 131900535 131900832 -10370612 - AluSp SINE Alu -16 297 1 1788 153 14 14 chr9 131900835 131900993 -10370451 - AluJb SINE Alu -18 294 134 2460 40 7 3 chr9 131900993 131901297 -10370147 - AluY SINE Alu -5 306 2 1788 153 14 14 chr9 131901297 131901432 -10370012 - AluJb SINE Alu -177 135 1 1798 163 13 0 chr9 131901439 131901739 -10369705 - AluSx SINE Alu -8 304 1 717 133 66 158 chr9 131901739 131901865 -10369579 - AluJo SINE Alu -202 110 2 22 35 0 0 chr9 131901865 131901894 -10369550 + AT_rich Low_complexity Low_complexity 1 29 0 2073 127 3 3 chr9 131901903 131902203 -10369241 - AluSx SINE Alu -12 300 1 2148 101 0 3 chr9 131902213 131902511 -10368933 - AluSg1 SINE Alu -12 297 1 192 341 47 12 chr9 131902514 131902599 -10368845 + L3 LINE CR1 1375 1462 -115 609 255 109 0 chr9 131902638 131902830 -10368614 - MIR SINE MIR -20 242 30 995 187 0 0 chr9 131904822 131904988 -10366456 - FRAM SINE Alu 0 166 1 183 156 0 0 chr9 131905938 131905970 -10365474 + (TA)n Simple_repeat Simple_repeat 1 32 0 21 57 0 0 chr9 131905977 131906012 -10365432 + AT_rich Low_complexity Low_complexity 1 35 0 * 844 231 129 16 chr9 131906005 131906261 -10365183 - AluSg1 SINE Alu -1 308 24 687 279 96 36 chr9 131906936 131907435 -10364009 - L1M4 LINE L1 -1320 4826 4298 2146 124 0 13 chr9 131907460 131907766 -10363678 - AluSc SINE Alu -7 302 1 431 179 114 65 chr9 131909928 131910051 -10361393 - FLAM_A SINE Alu 0 133 5 337 264 36 71 chr9 131911919 131912059 -10359385 - L1MCa LINE L1 -4328 2098 1964 2183 124 0 3 chr9 131912262 131912560 -10358884 + AluSg SINE Alu 1 297 -13 2234 116 3 3 chr9 131912561 131912864 -10358580 + AluSg SINE Alu 1 303 -7 1785 184 0 9 chr9 131914156 131914471 -10356973 + AluSx SINE Alu 1 312 0 439 315 84 6 chr9 131914504 131914682 -10356762 + MIR SINE MIR 57 248 -14 932 122 8 0 chr9 131914796 131914919 -10356525 - AluSq/x SINE Alu -188 124 1 1879 139 17 26 chr9 131914919 131915221 -10356223 - AluJb SINE Alu -13 299 1 2167 93 3 17 chr9 131915261 131915576 -10355868 + AluSp SINE Alu 1 311 0 2452 101 0 0 chr9 131915584 131915890 -10355554 + AluSq SINE Alu 1 306 -7 243 0 0 0 chr9 131915890 131915917 -10355527 + (TA)n Simple_repeat Simple_repeat 2 28 0 2294 112 0 3 chr9 131918160 131918456 -10352988 + AluSq SINE Alu 1 295 -18 2121 121 11 0 chr9 131918633 131918945 -10352499 + AluSq SINE Alu 1 315 0 1610 181 35 3 chr9 131919870 131920158 -10351286 + AluJo SINE Alu 5 301 -11 200 299 47 47 chr9 131920247 131920354 -10351090 + MIR3 SINE MIR 85 191 -17 2322 95 7 0 chr9 131920903 131921199 -10350245 - AluSc SINE Alu -11 298 1 1444 175 31 58 chr9 131921622 131921787 -10349657 - AluJb SINE Alu 0 307 153 2342 105 0 0 chr9 131921787 131922083 -10349361 - AluSg SINE Alu -14 296 1 1444 175 31 58 chr9 131922083 131922232 -10349212 - AluJb SINE Alu -154 153 1 372 147 31 3 chr9 131922285 131922509 -10348935 + AluJo SINE Alu 1 302 0 21 36 0 0 chr9 131922788 131922816 -10348628 + AT_rich Low_complexity Low_complexity 1 28 0 324 286 133 29 chr9 131922944 131923154 -10348290 + L1M4 LINE L1 4269 4500 -1646 2817 33 0 0 chr9 131924971 131925278 -10346166 + AluY SINE Alu 1 307 -4 2216 117 7 3 chr9 131926834 131927134 -10344310 - AluSx SINE Alu -11 301 1 207 0 0 0 chr9 131927430 131927453 -10343991 + (A)n Simple_repeat Simple_repeat 1 23 0 215 255 72 63 chr9 131927911 131928020 -10343424 + MIR SINE MIR 42 154 -67 23 0 0 0 chr9 131930272 131930295 -10341149 + GC_rich Low_complexity Low_complexity 1 23 0 529 156 12 150 chr9 131932761 131932857 -10338587 - MIR SINE MIR -33 229 166 2417 82 13 0 chr9 131932857 131933163 -10338281 - AluSp SINE Alu 0 313 4 529 156 12 150 chr9 131933163 131933239 -10338205 - MIR SINE MIR -96 166 81 237 246 9 64 chr9 131934709 131934819 -10336625 + G-rich Low_complexity Low_complexity 6 109 0 21 0 0 0 chr9 131934828 131934849 -10336595 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 131935257 131935285 -10336159 + GC_rich Low_complexity Low_complexity 1 28 0 2525 71 0 3 chr9 131935556 131935865 -10335579 + AluSg SINE Alu 1 308 -2 2194 128 0 22 chr9 131936539 131936678 -10334766 + AluSx SINE Alu 1 142 -170 2228 98 13 28 chr9 131936678 131936996 -10334448 + AluSq SINE Alu 1 313 0 2194 128 0 22 chr9 131936996 131937175 -10334269 + AluSx SINE Alu 142 312 0 705 175 0 29 chr9 131937225 131937362 -10334082 + FLAM_C SINE Alu 1 133 0 2096 109 10 45 chr9 131937658 131937823 -10333621 - AluSx SINE Alu -12 300 150 2571 53 7 0 chr9 131937823 131938126 -10333318 - AluY SINE Alu -5 306 2 2096 109 10 45 chr9 131938126 131938271 -10333173 - AluSx SINE Alu -162 150 1 2308 81 14 0 chr9 131938476 131938773 -10332671 + AluSp SINE Alu 3 303 -10 822 114 9 0 chr9 131938880 131938994 -10332450 - AluSg/x SINE Alu -16 296 182 2341 99 10 0 chr9 131939142 131939445 -10331999 + AluY SINE Alu 3 308 -3 2191 135 0 0 chr9 131940003 131940307 -10331137 + AluJb SINE Alu 1 304 -8 817 174 0 22 chr9 131940308 131940446 -10330998 + AluSp SINE Alu 1 135 -178 2268 125 7 0 chr9 131940453 131940757 -10330687 + AluSx SINE Alu 1 306 -6 262 274 159 28 chr9 131940757 131941082 -10330362 - L2 LINE L2 -307 2965 2577 194 0 39 0 chr9 131941341 131941367 -10330077 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 723 173 0 24 chr9 131941369 131941496 -10329948 - FLAM_C SINE Alu -8 125 2 294 316 43 0 chr9 131941834 131941951 -10329493 + MIR SINE MIR 76 197 -65 363 333 109 0 chr9 131942033 131942225 -10329219 + MIR SINE MIR 35 247 -15 2604 47 10 0 chr9 131942226 131942523 -10328921 + AluY SINE Alu 1 300 -11 209 322 0 0 chr9 131942544 131942603 -10328841 + (TG)n Simple_repeat Simple_repeat 2 60 0 262 257 40 30 chr9 131942693 131942794 -10328650 - MER5A DNA MER1_type -69 120 19 2018 120 48 0 chr9 131942851 131943142 -10328302 - AluSx SINE Alu -7 305 1 454 280 96 28 chr9 131943149 131943363 -10328081 - L1MC4 LINE L1 -1 8041 7802 2039 121 10 43 chr9 131943363 131943668 -10327776 + AluSx SINE Alu 1 295 -17 454 280 96 28 chr9 131943668 131943735 -10327709 - L1MC4 LINE L1 -240 7802 7741 1698 104 0 5 chr9 131943883 131944105 -10327339 + AluSg SINE Alu 3 223 -87 414 154 0 88 chr9 131944205 131944296 -10327148 + AluSg SINE Alu 214 296 -13 2573 80 0 0 chr9 131944342 131944653 -10326791 - AluY SINE Alu 0 311 1 2363 98 0 7 chr9 131944655 131944950 -10326494 - AluSp SINE Alu -20 293 1 548 234 108 6 chr9 131944991 131945149 -10326295 - L1ME3 LINE L1 -45 6117 5944 311 261 43 9 chr9 131945161 131945276 -10326168 - L1MC5 LINE L1 -519 7442 7324 1957 158 7 0 chr9 131945330 131945627 -10325817 - AluJo SINE Alu -13 299 1 913 179 39 0 chr9 131945638 131945794 -10325650 - AluJb SINE Alu -4 308 147 352 263 26 0 chr9 131946092 131946206 -10325238 + MIR3 SINE MIR 82 198 -10 2510 73 0 10 chr9 131947001 131947301 -10324143 - AluY SINE Alu -14 297 1 2275 118 0 3 chr9 131947308 131947621 -10323823 - AluSx SINE Alu 0 312 1 1549 166 83 29 chr9 131947656 131947934 -10323510 + AluJb SINE Alu 1 293 -19 180 308 22 44 chr9 131948016 131948107 -10323337 + MIR SINE MIR 154 242 -20 302 209 76 38 chr9 131948149 131948254 -10323190 + Charlie8 DNA MER1_type 62 170 -2247 305 188 34 111 chr9 131949005 131949122 -10322322 + MIR SINE MIR 3 110 -152 266 303 30 83 chr9 131949229 131949255 -10322189 + MIR SINE MIR 9 35 -227 2298 102 0 3 chr9 131949255 131949548 -10321896 + AluSx SINE Alu 3 294 -18 266 303 30 83 chr9 131949548 131949653 -10321791 + MIR SINE MIR 35 133 -129 2464 98 0 0 chr9 131949674 131949979 -10321465 - AluSx SINE Alu -7 305 1 432 0 0 0 chr9 131951001 131951049 -10320395 + (TG)n Simple_repeat Simple_repeat 2 49 0 259 125 36 0 chr9 131953264 131953320 -10318124 + L1M4 LINE L1 3883 3940 -2206 2197 94 10 13 chr9 131953320 131953619 -10317825 - AluSg SINE Alu 0 310 13 1481 127 88 3 chr9 131953619 131953902 -10317542 + L1M4 LINE L1 4069 4375 -1771 2317 103 0 3 chr9 131953995 131954296 -10317148 + AluSg SINE Alu 1 300 -10 403 157 22 11 chr9 131954300 131954389 -10317055 + L1M4 LINE L1 4754 4843 -1303 1864 175 10 3 chr9 131954422 131954725 -10316719 - AluJo SINE Alu -2 310 6 1165 126 8 85 chr9 131954752 131954938 -10316506 - AluSc SINE Alu 0 309 110 2016 131 6 35 chr9 131954938 131955252 -10316192 - AluSp SINE Alu -8 305 1 1165 126 8 85 chr9 131955252 131955276 -10316168 - AluSc SINE Alu -199 110 117 251 0 59 0 chr9 131955276 131955310 -10316134 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1165 126 8 85 chr9 131955310 131955344 -10316100 - AluSc SINE Alu -191 118 83 386 176 0 0 chr9 131955344 131955412 -10316032 - AluSc SINE Alu -51 248 181 1882 182 0 3 chr9 131955687 131956000 -10315444 - AluSx SINE Alu 0 312 1 274 184 0 0 chr9 131956001 131956050 -10315394 - FLAM_A SINE Alu -39 94 46 3834 205 22 56 chr9 131956050 131957053 -10314391 + LTR5 LTR ERVK 1 969 0 16328 155 18 21 chr9 131957053 131960303 -10311141 + HERVKC4 LTR ERVK 2 5461 -1782 10057 176 9 14 chr9 131960334 131962264 -10309180 + HERVKC4 LTR ERVK 5486 7241 -2 3744 215 20 57 chr9 131962266 131963272 -10308172 + LTR5 LTR ERVK 1 969 0 297 160 20 0 chr9 131963272 131963322 -10308122 - FLAM_A SINE Alu -82 51 1 953 159 74 56 chr9 131963322 131963369 -10308075 + L1M4 LINE L1 4972 5017 -1129 2362 71 0 0 chr9 131963369 131963677 -10307767 + AluY SINE Alu 1 308 0 953 159 74 56 chr9 131963677 131963898 -10307546 + L1M4 LINE L1 5017 5246 -900 2159 143 0 0 chr9 131963929 131964230 -10307214 + AluSx SINE Alu 1 301 -11 2202 130 10 0 chr9 131964232 131964533 -10306911 + AluSq SINE Alu 3 306 -7 1985 148 47 0 chr9 131964540 131964838 -10306606 + AluSx SINE Alu 1 312 0 2421 78 3 0 chr9 131964895 131965191 -10306253 + AluY SINE Alu 1 297 -14 232 143 0 0 chr9 131965201 131965236 -10306208 + Alu SINE Alu 2 36 -97 2090 66 0 0 chr9 131965338 131965579 -10305865 - AluY SINE Alu -37 274 34 1812 174 176 34 chr9 131965582 131966025 -10305419 - MLT2B3 LTR ERVL -46 508 3 924 191 106 0 chr9 131966032 131966231 -10305213 - L1MCa LINE L1 -6117 309 90 2318 95 10 0 chr9 131966232 131966527 -10304917 - AluSx SINE Alu -14 298 1 1375 193 58 0 chr9 131966527 131966802 -10304642 - Tigger1 DNA MER2_type -2106 312 22 2505 104 11 8 chr9 131966843 131967217 -10304227 + THE1C LTR MaLR 1 375 0 903 147 15 0 chr9 131967829 131967965 -10303479 - AluJo SINE Alu -174 138 1 275 290 14 0 chr9 131968030 131968099 -10303345 - MIR SINE MIR -71 191 122 2215 95 0 39 chr9 131968485 131968791 -10302653 - AluSg SINE Alu -16 294 1 277 297 49 9 chr9 131968879 131969008 -10302436 + MIR SINE MIR 22 156 -64 872 146 0 0 chr9 131969015 131969145 -10302299 + FLAM_C SINE Alu 1 130 -3 180 0 0 0 chr9 131969258 131969278 -10302166 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 2500 75 0 13 chr9 131969746 131970052 -10301392 + AluY SINE Alu 1 302 -9 543 180 281 6 chr9 131970067 131970245 -10301199 - L1MB2 LINE L1 -7 6164 5938 1882 164 3 0 chr9 131970711 131971003 -10300441 - AluJb SINE Alu -9 303 11 2179 104 3 17 chr9 131971011 131971177 -10300267 - AluSp SINE Alu -13 300 138 2416 82 0 0 chr9 131971177 131971470 -10299974 - AluY SINE Alu -18 293 1 2179 104 3 17 chr9 131971470 131971602 -10299842 - AluSp SINE Alu -175 138 6 357 134 0 73 chr9 131971605 131971687 -10299757 - L1MB2 LINE L1 -688 5486 5411 * 359 246 35 0 chr9 131971672 131971786 -10299658 - L1MB2 LINE L1 -1423 4723 4606 2179 104 7 0 chr9 131971786 131972092 -10299352 - AluSg SINE Alu 0 309 2 2384 103 0 0 chr9 131972097 131972398 -10299046 - AluSx SINE Alu -11 301 1 923 213 23 4 chr9 131972398 131972656 -10298788 - L1MB2 LINE L1 -1645 4501 4239 2306 101 10 0 chr9 131972656 131972962 -10298482 - AluSg SINE Alu -1 309 1 2325 116 0 0 chr9 131972965 131973268 -10298176 - AluSx SINE Alu -9 303 1 372 217 0 108 chr9 131973268 131973388 -10298056 - L1MB2 LINE L1 -2291 3855 3749 469 167 0 0 chr9 131973398 131973494 -10297950 - L1MEc LINE L1 -3991 2405 2310 1348 193 59 0 chr9 131973504 131973743 -10297701 - AluJb SINE Alu -25 287 35 2117 125 0 35 chr9 131973751 131974093 -10297351 - AluSc SINE Alu 0 331 1 2239 118 3 0 chr9 131974094 131974391 -10297053 - AluSp SINE Alu -15 298 1 739 160 29 11 chr9 131974522 131974697 -10296747 + CT-rich Low_complexity Low_complexity 1 178 0 301 104 0 0 chr9 131974701 131974749 -10296695 - AluSx SINE Alu -3 299 252 1136 117 5 75 chr9 131974749 131974937 -10296507 - AluSx SINE Alu -124 188 14 339 239 43 43 chr9 131974937 131975048 -10296396 - L1MEc LINE L1 -4070 2326 2213 2634 55 0 3 chr9 131975048 131975359 -10296085 - AluY SINE Alu -1 310 1 339 239 43 43 chr9 131975359 131975385 -10296059 - L1MEc LINE L1 -4182 2214 2189 1906 159 0 25 chr9 131975386 131975706 -10295738 - AluSx SINE Alu 0 312 1 2181 114 0 29 chr9 131975706 131976012 -10295432 - AluSg SINE Alu -12 298 1 359 243 39 58 chr9 131976014 131976117 -10295327 - L1M4 LINE L1 -639 5539 5439 1159 146 70 5 chr9 131976122 131976321 -10295123 - AluJo SINE Alu -100 212 1 2112 104 34 7 chr9 131976482 131976779 -10294665 + AluSq SINE Alu 5 309 -4 2380 80 0 0 chr9 131976800 131977086 -10294358 - AluSx SINE Alu -26 286 1 1195 122 69 76 chr9 131977750 131977985 -10293459 - Tigger3(Golem) DNA MER2_type -257 2772 2537 2544 66 0 0 chr9 131977985 131978286 -10293158 - AluY SINE Alu -10 301 1 1195 122 69 76 chr9 131978286 131978308 -10293136 - Tigger3(Golem) DNA MER2_type -492 2537 2516 1395 149 59 80 chr9 131978308 131978514 -10292930 - AluSx SINE Alu 0 328 129 1940 150 13 3 chr9 131978514 131978820 -10292624 - AluSx SINE Alu -3 309 1 1395 149 59 80 chr9 131978820 131978946 -10292498 - AluSx SINE Alu -199 129 2 1195 122 69 76 chr9 131978946 131978974 -10292470 - Tigger3(Golem) DNA MER2_type -513 2516 2487 2208 127 3 3 chr9 131978984 131979284 -10292160 - AluSx SINE Alu -12 300 1 1808 100 0 4 chr9 131979294 131979533 -10291911 - AluSg1 SINE Alu -13 296 59 186 294 54 54 chr9 131979854 131979946 -10291498 + MIR SINE MIR 90 181 -81 237 33 0 0 chr9 131980109 131980139 -10291305 + (CA)n Simple_repeat Simple_repeat 1 30 0 2168 121 3 3 chr9 131980205 131980503 -10290941 + AluSx SINE Alu 1 298 -14 1293 133 91 11 chr9 131980520 131980805 -10290639 - L1MB3 LINE L1 0 6183 5876 836 107 15 38 chr9 131980932 131981063 -10290381 + AluSg/x SINE Alu 171 298 -12 323 303 46 9 chr9 131981070 131981179 -10290265 - MIR3 SINE MIR -81 127 15 641 299 40 39 chr9 131981746 131982181 -10289263 - L1ME3A LINE L1 -150 6014 5589 495 279 83 25 chr9 131982458 131982662 -10288782 - MIR SINE MIR -16 246 31 349 288 266 0 chr9 131983282 131983459 -10287985 + MIR SINE MIR 36 259 -3 1849 80 0 4 chr9 131984599 131984825 -10286619 + AluSp SINE Alu 76 300 -13 546 285 113 5 chr9 131984896 131985117 -10286327 - MIR SINE MIR -2 260 16 446 313 28 11 chr9 131985146 131985322 -10286122 + MIR3 SINE MIR 15 193 -15 421 283 219 7 chr9 131985383 131985451 -10285993 + MER102b DNA MER1_type 1 53 -1375 2392 85 0 0 chr9 131985451 131985746 -10285698 - AluSg1 SINE Alu -14 295 1 421 283 219 7 chr9 131985746 131985956 -10285488 + MER102b DNA MER1_type 53 338 -3 212 296 31 20 chr9 131985958 131986056 -10285388 - MIR3 SINE MIR -48 160 62 732 317 60 33 chr9 131986511 131986692 -10284752 + L2 LINE L2 2851 3026 -287 2433 89 3 0 chr9 131986692 131986994 -10284450 + AluSg SINE Alu 1 303 -7 732 317 60 33 chr9 131986994 131987231 -10284213 + L2 LINE L2 3026 3280 -33 1050 238 60 50 chr9 131987235 131987634 -10283810 - L1MC3 LINE L1 -487 7298 6896 1171 227 15 33 chr9 131987634 131987969 -10283475 + MLT1A1 LTR MaLR 1 329 -36 1743 156 52 0 chr9 131988149 131988418 -10283026 - AluSx SINE Alu -29 283 1 2010 134 13 22 chr9 131988498 131988811 -10282633 - AluSq SINE Alu -3 310 1 2188 63 50 75 chr9 131989025 131989344 -10282100 - AluY SINE Alu 0 311 1 1676 127 0 92 chr9 131989640 131989779 -10281665 + AluSx SINE Alu 1 151 -161 2271 124 0 3 chr9 131989779 131990086 -10281358 + AluSx SINE Alu 5 310 -2 1611 104 0 43 chr9 131990096 131990327 -10281117 + AluSg/x SINE Alu 87 307 -5 1676 127 0 92 chr9 131990327 131990460 -10280984 + AluSx SINE Alu 160 258 -54 1986 121 0 11 chr9 131990561 131990834 -10280610 - AluSq SINE Alu -32 281 12 2147 109 20 3 chr9 131990834 131991137 -10280307 - AluSq SINE Alu -5 308 1 2138 116 14 3 chr9 131991140 131991433 -10280011 - AluSx SINE Alu -14 298 3 1478 196 68 14 chr9 131991473 131991753 -10279691 + AluJb SINE Alu 1 295 -17 2443 64 17 0 chr9 131991944 131992241 -10279203 + AluSx SINE Alu 1 302 -10 957 194 0 35 chr9 131992241 131992411 -10279033 + AluJb SINE Alu 137 300 -12 479 286 20 16 chr9 131992412 131992660 -10278784 + L1ME4a LINE L1 5698 5946 -175 2321 100 7 0 chr9 131992706 131993005 -10278439 - AluSq SINE Alu -12 301 1 1985 148 47 0 chr9 131993062 131993360 -10278084 - AluSx SINE Alu 0 312 1 2167 129 10 3 chr9 131993367 131993669 -10277775 - AluSq SINE Alu -7 306 3 2240 126 0 3 chr9 131993671 131993981 -10277463 - AluSx SINE Alu -3 309 1 262 250 21 21 chr9 131993982 131994078 -10277366 - L1M4 LINE L1 -878 5268 5173 1965 113 64 3 chr9 131994183 131994465 -10276979 - AluSq SINE Alu -14 299 1 2114 111 14 3 chr9 131994511 131994800 -10276644 - AluSq SINE Alu -20 293 2 438 130 0 0 chr9 131994871 131994940 -10276504 + Alu SINE Alu 236 304 -8 360 0 0 0 chr9 131994997 131995037 -10276407 + (TG)n Simple_repeat Simple_repeat 2 41 0 228 175 63 0 chr9 131995168 131995231 -10276213 - Alu SINE Alu -2 298 232 214 204 23 0 chr9 131995828 131995872 -10275572 - L2 LINE L2 -223 3049 3005 1162 73 26 0 chr9 131995958 131996109 -10275335 - BC200 scRNA scRNA -45 155 1 2361 101 0 0 chr9 131996112 131996408 -10275036 - AluSx SINE Alu -16 296 1 191 233 100 0 chr9 131996536 131996596 -10274848 - MIR SINE MIR -103 159 94 427 328 39 0 chr9 131997081 131997261 -10274183 + MIR SINE MIR 57 243 -19 2452 94 0 0 chr9 131997310 131997619 -10273825 - AluSg SINE Alu -1 309 1 457 75 0 0 chr9 131997658 131997725 -10273719 - AluY SINE Alu -6 306 240 1192 71 0 0 chr9 131997725 131997865 -10273579 - AluY SINE Alu -138 173 34 1781 181 176 34 chr9 131997868 131998311 -10273133 - MLT2B3 LTR ERVL -46 508 3 744 207 119 5 chr9 131998318 131998511 -10272933 - L1MCa LINE L1 -6117 309 95 2276 102 10 0 chr9 131998518 131998813 -10272631 - AluSx SINE Alu -14 298 1 572 215 39 0 chr9 131998813 131998943 -10272501 - Tigger1 DNA MER2_type -2106 312 178 28 48 0 0 chr9 132000316 132000358 -10271086 + AT_rich Low_complexity Low_complexity 1 42 0 285 285 190 5 chr9 132001432 132001632 -10269812 + L2 LINE L2 2983 3219 -53 2549 38 7 3 chr9 132001767 132002060 -10269384 + AluY SINE Alu 1 294 -17 726 218 14 0 chr9 132002079 132002226 -10269218 + Tigger7 DNA MER2_type 2339 2487 0 568 207 136 35 chr9 132002249 132002447 -10268997 - MIR SINE MIR -24 238 21 252 274 23 28 chr9 132002724 132002822 -10268622 - MIR3 SINE MIR -49 159 84 386 248 116 0 chr9 132002898 132003019 -10268425 + MIR3 SINE MIR 62 196 -12 2185 100 10 48 chr9 132003165 132003474 -10267970 - AluSx SINE Alu -15 297 1 702 156 23 8 chr9 132005173 132005301 -10266143 + FLAM_C SINE Alu 2 131 -12 1040 202 16 82 chr9 132006513 132006695 -10264749 + LTR32 LTR ERVL 232 394 -77 1910 160 10 0 chr9 132006695 132006983 -10264461 - AluJo SINE Alu -21 291 1 1040 202 16 82 chr9 132006983 132007057 -10264387 + LTR32 LTR ERVL 394 471 0 304 239 13 42 chr9 132007859 132007960 -10263484 - MER5A DNA MER1_type -75 114 6 367 336 98 0 chr9 132010917 132011060 -10260384 + MIR SINE MIR 48 204 -58 2307 52 17 7 chr9 132012099 132012389 -10259055 + AluY SINE Alu 1 293 -18 1774 163 0 17 chr9 132012577 132012871 -10258573 + AluJo SINE Alu 1 289 -23 315 333 31 16 chr9 132013033 132013162 -10258282 + MIR SINE MIR 16 146 -62 543 296 106 59 chr9 132014095 132014166 -10257278 - L2 LINE L2 -16 3256 3190 1743 121 0 4 chr9 132014166 132014415 -10257029 - AluSx SINE Alu -63 249 2 543 296 106 59 chr9 132014415 132014810 -10256634 - L2 LINE L2 -82 3190 2762 190 231 0 77 chr9 132014827 132014879 -10256565 - L2 LINE L2 -7 3265 3218 204 272 136 111 chr9 132015242 132015404 -10256040 - MIR3 SINE MIR -42 166 1 194 0 39 0 chr9 132015739 132015765 -10255679 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2207 96 7 3 chr9 132016166 132016467 -10254977 - AluSq SINE Alu -11 302 1 23 0 0 0 chr9 132017812 132017835 -10253609 + GC_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr9 132017917 132017981 -10253463 + GC_rich Low_complexity Low_complexity 1 64 0 272 286 61 0 chr9 132018661 132018759 -10252685 + L1MC/D LINE L1 5783 5886 -1922 2404 54 0 3 chr9 132018780 132019075 -10252369 + AluY SINE Alu 1 294 -17 344 290 14 58 chr9 132019348 132019419 -10252025 - MIR SINE MIR -110 152 88 2415 57 0 3 chr9 132019419 132019715 -10251729 + AluY SINE Alu 1 295 -16 344 290 14 58 chr9 132019715 132019781 -10251663 - MIR SINE MIR -174 88 21 236 288 0 17 chr9 132019826 132019885 -10251559 + L2 LINE L2 3209 3266 -6 226 294 56 56 chr9 132019893 132020019 -10251425 + MIR SINE MIR 17 142 -120 245 154 96 0 chr9 132020086 132020138 -10251306 - MIR SINE MIR -112 150 94 272 356 129 26 chr9 132020241 132020505 -10250939 - L2 LINE L2 -31 3241 2951 2533 44 0 0 chr9 132020834 132021132 -10250312 - AluY SINE Alu -13 298 1 321 196 0 0 chr9 132021209 132021265 -10250179 + MIR SINE MIR 85 140 -68 1979 143 7 0 chr9 132021726 132022020 -10249424 + AluSx SINE Alu 1 296 -16 445 225 9 43 chr9 132022062 132022200 -10249244 - MIR SINE MIR -61 147 46 269 290 104 0 chr9 132022299 132022433 -10249011 + MER20B DNA MER1_type 69 217 -2 2169 118 3 0 chr9 132022963 132023267 -10248177 + AluSx SINE Alu 1 305 -7 1086 120 0 42 chr9 132023267 132023434 -10248010 + AluSg/x SINE Alu 134 293 -19 1772 92 0 0 chr9 132023534 132023761 -10247683 - AluSq SINE Alu -86 227 1 1266 104 0 0 chr9 132023769 132023942 -10247502 - AluSg/x SINE Alu -11 301 129 1875 97 63 33 chr9 132023946 132024246 -10247198 - AluSx SINE Alu -3 309 1 501 231 29 42 chr9 132024272 132024382 -10247062 + Tigger6 DNA MER2_type 1318 1428 -169 782 172 0 8 chr9 132024382 132024510 -10246934 - FLAM_C SINE Alu -4 129 3 501 231 29 42 chr9 132024510 132024637 -10246807 + Tigger6 DNA MER2_type 1428 1552 -45 2152 121 0 10 chr9 132024637 132024943 -10246501 - AluSx SINE Alu -9 303 1 2182 97 3 3 chr9 132024950 132025248 -10246196 - AluSx SINE Alu -14 298 1 2393 90 0 0 chr9 132025260 132025571 -10245873 - AluY SINE Alu 0 311 1 2207 85 3 16 chr9 132025583 132025888 -10245556 - AluSc SINE Alu -8 301 1 250 240 0 0 chr9 132025890 132025940 -10245504 + Tigger6 DNA MER2_type 1548 1597 0 227 56 56 0 chr9 132025941 132025977 -10245467 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 1757 153 11 11 chr9 132026007 132026294 -10245150 - AluJo SINE Alu -15 297 11 1898 149 0 3 chr9 132026378 132026699 -10244745 - AluJb SINE Alu 0 320 1 2918 186 14 27 chr9 132026778 132027081 -10244363 - L1MB5 LINE L1 0 6174 5881 1504 194 38 3 chr9 132027081 132027369 -10244075 - AluJb SINE Alu -14 298 1 2918 186 14 27 chr9 132027369 132027652 -10243792 - L1MB5 LINE L1 -293 5881 5596 2110 92 0 0 chr9 132027704 132027977 -10243467 + AluSx SINE Alu 25 297 -15 799 168 0 0 chr9 132028000 132028125 -10243319 + FLAM_C SINE Alu 1 125 -18 611 195 0 73 chr9 132028140 132028274 -10243170 - L1MB5 LINE L1 -1144 5002 4881 2316 65 0 3 chr9 132028274 132028564 -10242880 + AluY SINE Alu 2 290 -21 611 195 0 73 chr9 132028564 132028593 -10242851 - L1MB5 LINE L1 -1265 4881 4851 1938 148 0 13 chr9 132028595 132028731 -10242713 + AluJo SINE Alu 1 137 -175 2307 100 0 0 chr9 132028731 132029031 -10242413 + AluSc SINE Alu 1 300 -9 1938 148 0 13 chr9 132029031 132029205 -10242239 + AluJo SINE Alu 137 307 -5 832 170 0 27 chr9 132029208 132029355 -10242089 + AluJb SINE Alu 166 308 -4 781 202 119 21 chr9 132029361 132029554 -10241890 + AluSg/x SINE Alu 81 292 -17 492 187 15 60 chr9 132029554 132029663 -10241781 - L1MB5 LINE L1 -1291 4855 4752 2455 57 0 3 chr9 132029663 132029964 -10241480 + AluY SINE Alu 1 300 -11 492 187 15 60 chr9 132029964 132029988 -10241456 - L1MB5 LINE L1 -1394 4752 4728 258 280 100 107 chr9 132029975 132030257 -10241187 - L1ME LINE L1 -222 5899 5616 * 1789 180 3 0 chr9 132030257 132030557 -10240887 + AluJo SINE Alu 1 301 -11 258 280 100 107 chr9 132030557 132030816 -10240628 - L1ME LINE L1 -505 5616 5369 2112 96 28 10 chr9 132030816 132031107 -10240337 - AluSx SINE Alu -16 296 1 440 258 75 11 chr9 132031107 132031293 -10240151 - L1ME LINE L1 -1258 4888 4691 1897 143 7 3 chr9 132031297 132031604 -10239840 - AluJb SINE Alu -4 308 1 396 233 123 46 chr9 132031605 132031824 -10239620 - L1MC5 LINE L1 -546 7415 7180 197 315 14 41 chr9 132031880 132031953 -10239491 + MIR SINE MIR 166 236 -26 321 26 0 0 chr9 132031958 132031996 -10239448 + (TTG)n Simple_repeat Simple_repeat 2 39 0 210 357 207 0 chr9 132032279 132032492 -10238952 + L2 LINE L2 3006 3262 -10 368 324 19 0 chr9 132032631 132032736 -10238708 + MIR SINE MIR 86 192 -70 197 350 112 35 chr9 132032851 132032994 -10238450 - MIR3 SINE MIR -22 186 33 933 172 11 22 chr9 132033012 132033192 -10238252 - AluSg/x SINE Alu -1 309 132 2106 123 0 3 chr9 132033193 132033495 -10237949 - AluSx SINE Alu -11 301 1 329 274 90 18 chr9 132034414 132034597 -10236847 + MIR3 SINE MIR 10 208 -54 1939 134 3 28 chr9 132034744 132034926 -10236518 - AluSq SINE Alu 0 313 141 2175 110 0 35 chr9 132034926 132035243 -10236201 - AluSg SINE Alu -4 306 1 1939 134 3 28 chr9 132035243 132035381 -10236063 - AluSq SINE Alu -172 141 1 260 327 168 0 chr9 132035651 132035764 -10235680 + MIR SINE MIR 61 192 -70 2088 106 7 10 chr9 132035960 132036261 -10235183 + AluSx SINE Alu 1 300 -12 2290 113 0 0 chr9 132036447 132036757 -10234687 - AluSq SINE Alu -3 310 1 291 276 0 13 chr9 132037273 132037349 -10234095 - L2 LINE L2 -208 3064 2990 1081 172 0 6 chr9 132037426 132037600 -10233844 - AluJb SINE Alu -7 305 133 210 37 0 0 chr9 132037600 132037627 -10233817 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1468 122 44 95 chr9 132037627 132037922 -10233522 - AluJb SINE Alu -28 284 5 2243 85 0 10 chr9 132037925 132038096 -10233348 - AluSc SINE Alu -7 302 134 2144 65 6 77 chr9 132038096 132038420 -10233024 - AluSg SINE Alu -9 301 1 2243 85 0 10 chr9 132038420 132038553 -10232891 - AluSc SINE Alu -175 134 1 572 332 52 4 chr9 132038563 132038795 -10232649 - L1ME LINE L1 -302 5819 5577 648 211 32 0 chr9 132038801 132038924 -10232520 + FLAM_A SINE Alu 14 140 -2 216 158 0 0 chr9 132039041 132039079 -10232365 + T-rich Low_complexity Low_complexity 1 38 0 1902 130 29 0 chr9 132039092 132039411 -10232033 + AluSq SINE Alu 1 327 0 263 322 61 9 chr9 132039513 132039628 -10231816 + L2 LINE L2 3151 3271 -1 296 289 82 22 chr9 132040893 132041028 -10230416 + MIR SINE MIR 85 227 -35 2319 81 0 0 chr9 132041039 132041336 -10230108 - AluSx SINE Alu -15 297 1 2231 114 0 0 chr9 132041750 132042056 -10229388 + AluSx SINE Alu 2 307 -5 326 154 0 15 chr9 132042077 132042142 -10229302 + GA-rich Low_complexity Low_complexity 1 64 0 445 283 64 75 chr9 132043047 132043184 -10228260 + MER91A DNA MER1_type 4 141 -55 2103 99 10 13 chr9 132043184 132043496 -10227948 - AluY SINE Alu 0 311 1 2263 93 0 26 chr9 132043496 132043809 -10227635 - AluSx SINE Alu -7 305 1 445 283 64 75 chr9 132043809 132043857 -10227587 + MER91A DNA MER1_type 139 188 -8 287 257 97 18 chr9 132043840 132043953 -10227491 + MIR3 SINE MIR 81 202 -6 * 2113 103 10 10 chr9 132044064 132044375 -10227069 - AluSx SINE Alu -1 311 1 2060 111 4 0 chr9 132045411 132045721 -10225723 - AluSx SINE Alu 0 311 1 237 33 0 0 chr9 132045787 132045817 -10225627 + (TG)n Simple_repeat Simple_repeat 1 30 0 224 308 58 48 chr9 132045980 132046084 -10225360 - MIR SINE MIR -81 181 77 344 298 11 0 chr9 132046233 132046327 -10225117 + MER21B LTR ERV1 1 95 -768 2328 60 7 17 chr9 132046588 132046886 -10224558 + AluY SINE Alu 1 295 -16 2130 110 3 0 chr9 132046897 132047189 -10224255 + AluSx SINE Alu 1 293 -19 891 184 0 18 chr9 132047197 132047360 -10224084 + AluJo SINE Alu 13 172 -140 2352 86 3 0 chr9 132047388 132047692 -10223752 + AluSp SINE Alu 1 305 -8 1860 124 7 42 chr9 132047692 132047999 -10223445 + AluSx SINE Alu 1 296 -16 1055 136 0 0 chr9 132048106 132048261 -10223183 + FRAM SINE Alu 1 154 -22 311 189 222 0 chr9 132048939 132049029 -10222415 - L2 LINE L2 -4 3309 3200 275 284 40 0 chr9 132049668 132049742 -10221702 - MIR3 SINE MIR -28 180 104 2111 135 0 0 chr9 132049808 132050112 -10221332 - AluSx SINE Alu -8 304 1 2166 79 3 14 chr9 132050389 132050680 -10220764 - AluSx SINE Alu -14 298 11 304 322 191 0 chr9 132050683 132050835 -10220609 + MIR SINE MIR 82 262 0 658 190 0 33 chr9 132051511 132051632 -10219812 - FRAM SINE Alu -46 130 14 197 331 56 31 chr9 132051996 132052156 -10219288 - MIR3 SINE MIR -42 166 3 2200 125 0 0 chr9 132052696 132053001 -10218443 + AluSx SINE Alu 3 307 -5 282 184 118 0 chr9 132053635 132053711 -10217733 + MIR SINE MIR 45 129 -79 263 28 28 0 chr9 132054017 132054053 -10217391 + (CA)n Simple_repeat Simple_repeat 2 38 0 240 242 0 48 chr9 132055242 132055304 -10216140 - MIR SINE MIR -91 171 113 180 179 26 0 chr9 132056041 132056080 -10215364 + L2 LINE L2 3017 3056 -216 3028 119 68 4 chr9 132058278 132058774 -10212670 + MER1A DNA MER1_type 2 529 0 218 208 19 0 chr9 132058801 132058854 -10212590 + MIR SINE MIR 81 134 -74 * 252 225 0 50 chr9 132058847 132058927 -10212517 - MIR SINE MIR -80 182 107 23 54 0 0 chr9 132059538 132059575 -10211869 + GC_rich Low_complexity Low_complexity 1 37 0 2594 65 3 0 chr9 132060193 132060503 -10210941 - AluSp SINE Alu -2 311 1 235 276 10 51 chr9 132060566 132060664 -10210780 + L1ME LINE L1 5532 5625 -496 1422 199 20 34 chr9 132060786 132060946 -10210498 - AluSx SINE Alu -19 293 132 1952 88 92 15 chr9 132060946 132061219 -10210225 - AluSg SINE Alu -16 294 1 1691 174 31 14 chr9 132061229 132061516 -10209928 - AluJb SINE Alu -16 296 5 1680 123 4 0 chr9 132061517 132061744 -10209700 + AluSx SINE Alu 64 291 -21 1422 199 20 34 chr9 132061744 132061867 -10209577 - AluSx SINE Alu -188 124 1 1338 110 57 113 chr9 132061868 132061916 -10209528 - L1MA7 LINE L1 -162 6129 6080 2434 95 0 3 chr9 132061916 132062220 -10209224 - AluSp SINE Alu -10 303 1 1338 110 57 113 chr9 132062220 132062256 -10209188 - L1MA7 LINE L1 -211 6080 6044 797 133 0 22 chr9 132062256 132062391 -10209053 + FLAM_C SINE Alu 1 132 -1 1338 110 57 113 chr9 132062391 132062628 -10208816 - L1MA7 LINE L1 -247 6044 5824 2206 110 0 7 chr9 132062628 132062919 -10208525 - AluSg SINE Alu -21 289 1 1338 110 57 113 chr9 132062919 132062930 -10208514 - L1MA7 LINE L1 -467 5824 5814 537 117 19 19 chr9 132062924 132063027 -10208417 - L1MA7 LINE L1 -852 5482 5380 * 594 103 43 1 chr9 132063038 132063271 -10208173 - AluSc SINE Alu -3 306 32 615 154 7 60 chr9 132063271 132063347 -10208097 - L1MA7 LINE L1 -782 5364 5298 2163 123 3 7 chr9 132063347 132063657 -10207787 - AluSx SINE Alu -3 309 1 615 154 7 60 chr9 132063657 132063729 -10207715 - L1MA7 LINE L1 -848 5298 5224 1043 107 0 7 chr9 132063751 132063900 -10207544 + AluSg/x SINE Alu 157 304 -6 2199 119 0 3 chr9 132063904 132064214 -10207230 + AluSg SINE Alu 2 310 0 1149 100 69 65 chr9 132064214 132064426 -10207018 - Tigger3(Golem) DNA MER2_type -284 2745 2530 2553 66 0 0 chr9 132064426 132064728 -10206716 - AluY SINE Alu -9 302 1 1149 100 69 65 chr9 132064728 132064746 -10206698 - Tigger3(Golem) DNA MER2_type -499 2530 2514 1179 123 0 19 chr9 132064752 132064949 -10206495 - AluSg/x SINE Alu 0 318 125 1970 124 0 0 chr9 132064949 132065224 -10206220 - AluSc SINE Alu 0 309 35 668 83 21 0 chr9 132065324 132065420 -10206024 - AluS SINE Alu -213 99 2 1993 131 3 32 chr9 132065430 132065610 -10205834 - AluJo SINE Alu 0 312 128 262 23 23 45 chr9 132065610 132065654 -10205790 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 2367 67 0 7 chr9 132065655 132065939 -10205505 - AluY SINE Alu -29 282 1 2261 108 0 3 chr9 132065941 132066238 -10205206 - AluSx SINE Alu -16 296 1 1993 131 3 32 chr9 132066238 132066365 -10205079 - AluJo SINE Alu -185 127 9 303 341 78 6 chr9 132066399 132066566 -10204878 + L1ME LINE L1 5662 5840 -281 806 137 0 8 chr9 132066696 132066827 -10204617 + AluJo/FLAM SINE Alu 1 130 -172 2086 124 18 3 chr9 132066830 132067112 -10204332 + AluSx SINE Alu 1 286 -26 896 111 8 0 chr9 132067112 132067229 -10204215 - AluJo/FLAM SINE Alu -194 118 1 1585 161 35 32 chr9 132067303 132067614 -10203830 - AluJo SINE Alu 0 312 1 1624 27 5 11 chr9 132067727 132067947 -10203497 - AluY SINE Alu 0 314 96 296 350 17 8 chr9 132068050 132068121 -10203323 + MIR SINE MIR 82 157 -105 2208 113 0 3 chr9 132068121 132068448 -10202996 + AluSx SINE Alu 1 326 0 296 350 17 8 chr9 132068448 132068495 -10202949 + MIR SINE MIR 157 202 -60 216 330 61 9 chr9 132068550 132068665 -10202779 + L2 LINE L2 3151 3271 -1 244 289 82 22 chr9 132069930 132070065 -10201379 + MIR SINE MIR 85 227 -35 2434 81 0 0 chr9 132070076 132070373 -10201071 - AluSx SINE Alu -15 297 1 1617 119 0 0 chr9 132070787 132070997 -10200447 + AluSx SINE Alu 2 211 -101 197 157 0 78 chr9 132071509 132071560 -10199884 + MIR SINE MIR 107 153 -55 183 255 142 57 chr9 132071995 132072101 -10199343 + MIR3 SINE MIR 49 163 -45 2290 57 4 0 chr9 132072398 132072705 -10198739 + AluY SINE Alu 1 308 0 1310 101 0 27 chr9 132072705 132072893 -10198551 + AluSg/x SINE Alu 122 304 -6 237 286 98 68 chr9 132073429 132073562 -10197882 + MIR SINE MIR 117 253 -9 2424 57 0 3 chr9 132073609 132073930 -10197514 - AluY SINE Alu 0 320 1 32 0 0 0 chr9 132074642 132074674 -10196770 + AT_rich Low_complexity Low_complexity 1 32 0 192 194 0 0 chr9 132075215 132075251 -10196193 + MIR SINE MIR 81 116 -92 267 328 112 0 chr9 132075431 132075565 -10195879 + MIR SINE MIR 35 183 -79 797 196 131 106 chr9 132075589 132075714 -10195730 - AluJo SINE Alu -19 283 163 2009 122 10 7 chr9 132075714 132076002 -10195442 - AluSc SINE Alu -20 289 1 2169 122 0 0 chr9 132076004 132076292 -10195152 - AluSg SINE Alu -22 288 1 797 196 131 106 chr9 132076292 132076438 -10195006 - AluJo SINE Alu -139 163 2 2173 130 10 0 chr9 132076458 132076758 -10194686 - AluSx SINE Alu -9 303 1 1521 198 53 6 chr9 132077261 132077620 -10193824 - L1MB3 LINE L1 0 6183 5808 257 301 43 11 chr9 132077636 132077729 -10193715 - MIR SINE MIR -119 143 48 429 232 89 0 chr9 132078429 132078541 -10192903 + MIR SINE MIR 61 182 -80 983 124 0 0 chr9 132078830 132078967 -10192477 + AluSg/x SINE Alu 165 301 -9 1130 146 6 0 chr9 132079084 132079248 -10192196 + FRAM SINE Alu 1 159 -17 314 275 66 0 chr9 132079548 132079639 -10191805 + MIR3 SINE MIR 60 156 -52 521 237 25 29 chr9 132079646 132079833 -10191611 - MIR SINE MIR 0 262 78 1566 167 18 14 chr9 132080234 132080516 -10190928 - AluSx SINE Alu -29 283 1 187 328 0 16 chr9 132080517 132080581 -10190863 - MER5B DNA MER1_type -115 63 1 397 256 40 0 chr9 132080904 132081029 -10190415 + L3 LINE CR1 1401 1530 -47 2583 73 0 0 chr9 132081091 132081393 -10190051 + AluSx SINE Alu 1 302 -10 289 227 159 31 chr9 132081406 132081506 -10189938 + Tigger6 DNA MER2_type 1127 1213 -384 1536 196 8 4 chr9 132081506 132081771 -10189673 + AluJb SINE Alu 2 267 -45 289 227 159 31 chr9 132081771 132081833 -10189611 + Tigger6 DNA MER2_type 1213 1310 -287 2413 80 13 0 chr9 132082074 132082374 -10189070 + AluSp SINE Alu 1 304 -9 22 0 0 0 chr9 132084586 132084608 -10186836 + GC_rich Low_complexity Low_complexity 1 22 0 211 273 30 0 chr9 132085274 132085340 -10186104 - MIR SINE MIR -21 241 174 2702 61 0 0 chr9 132085578 132085889 -10185555 - AluY SINE Alu 0 311 1 1408 73 6 6 chr9 132086202 132086379 -10185065 - AluSp SINE Alu -18 295 119 228 100 0 0 chr9 132086538 132086568 -10184876 + Alu SINE Alu 91 120 -182 1544 135 4 20 chr9 132086570 132086814 -10184630 + AluSg/x SINE Alu 73 312 0 2266 114 0 0 chr9 132086824 132087121 -10184323 + AluSx SINE Alu 1 297 -15 369 308 0 0 chr9 132087568 132087685 -10183759 - MIR SINE MIR -2 260 144 329 221 63 16 chr9 132087955 132088082 -10183362 - L1MC5 LINE L1 -165 7796 7664 662 194 15 22 chr9 132088082 132088216 -10183228 - MIR SINE MIR -103 159 27 2264 118 3 0 chr9 132088216 132088513 -10182931 - AluSx SINE Alu -14 298 1 303 204 216 0 chr9 132088518 132088606 -10182838 - L1MD3 LINE L1 -206 7789 7683 1281 35 0 0 chr9 132088606 132088749 -10182695 - AluY SINE Alu -20 291 149 2464 77 3 0 chr9 132088767 132089067 -10182377 - AluSx SINE Alu -11 301 1 2332 114 0 0 chr9 132089481 132089787 -10181657 + AluSx SINE Alu 2 307 -5 326 154 0 15 chr9 132089808 132089873 -10181571 + GA-rich Low_complexity Low_complexity 1 64 0 709 221 47 42 chr9 132090815 132091005 -10180439 - L1MD3 LINE L1 -1162 6833 6643 334 305 61 24 chr9 132091009 132091173 -10180271 + MIR SINE MIR 47 216 -46 414 39 0 0 chr9 132091269 132091321 -10180123 + (TG)n Simple_repeat Simple_repeat 2 53 0 30 0 0 0 chr9 132091357 132091387 -10180057 + AT_rich Low_complexity Low_complexity 1 30 0 1040 166 17 17 chr9 132092267 132092442 -10179002 + AluJo SINE Alu 121 295 -17 2353 82 10 0 chr9 132092557 132092849 -10178595 - AluY SINE Alu -16 295 1 2125 118 7 3 chr9 132092849 132093145 -10178299 - AluSx SINE Alu -14 298 2 225 289 22 22 chr9 132093217 132093307 -10178137 - MIR3 SINE MIR -26 182 93 183 200 40 40 chr9 132093389 132093439 -10178005 + L2 LINE L2 3223 3272 0 * 326 328 30 61 chr9 132093437 132093568 -10177876 + L2 LINE L2 3134 3260 -12 238 366 38 30 chr9 132093556 132093687 -10177757 - L2 LINE L2 -25 3247 3116 * 345 279 9 45 chr9 132093689 132093800 -10177644 + L1M LINE L1 5255 5361 -2447 1997 121 4 0 chr9 132093803 132094067 -10177377 + AluSq SINE Alu 2 266 -47 2429 70 3 3 chr9 132094201 132094501 -10176943 - AluY SINE Alu -11 300 1 289 259 27 89 chr9 132094523 132094610 -10176834 - L2 LINE L2 -6 3266 3186 1895 142 43 0 chr9 132094610 132094892 -10176552 + AluSq SINE Alu 1 294 -19 289 259 27 89 chr9 132094892 132094916 -10176528 - L2 LINE L2 -86 3186 3162 241 301 49 49 chr9 132094934 132095117 -10176327 - MIR SINE MIR 0 262 80 917 195 7 0 chr9 132095170 132095324 -10176120 + FRAM SINE Alu 1 152 -24 2544 31 21 10 chr9 132095379 132095670 -10175774 + AluY SINE Alu 16 309 -2 249 232 0 0 chr9 132095701 132095757 -10175687 + AluJ/monomer SINE Alu 245 300 -2 2035 145 7 3 chr9 132095788 132096091 -10175353 - AluSx SINE Alu -8 304 1 358 264 0 0 chr9 132096153 132096240 -10175204 - FLAM_A SINE Alu -1 132 46 585 266 65 32 chr9 132096436 132096684 -10174760 - MIR SINE MIR -1 261 6 2448 80 0 10 chr9 132096701 132097014 -10174430 - AluSg SINE Alu 0 310 1 183 192 39 39 chr9 132097044 132097096 -10174348 - MIR SINE MIR -60 148 97 27 29 0 0 chr9 132098189 132098223 -10173221 + AT_rich Low_complexity Low_complexity 1 34 0 324 276 61 0 chr9 132098880 132098978 -10172466 - MIR SINE MIR -78 184 81 2190 89 7 14 chr9 132098978 132099293 -10172151 - AluSp SINE Alu 0 313 1 2101 129 10 0 chr9 132099310 132099604 -10171840 - AluSp SINE Alu -16 297 1 2390 87 0 3 chr9 132099618 132099917 -10171527 - AluY SINE Alu -12 299 2 490 100 0 56 chr9 132099947 132100037 -10171407 + AluSg/x SINE Alu 203 287 -22 468 97 0 0 chr9 132100063 132100125 -10171319 - AluJ/FLAM SINE Alu -238 74 13 349 82 0 0 chr9 132100233 132100294 -10171150 - L1MB3 LINE L1 0 6183 6123 1929 196 46 108 chr9 132100296 132100652 -10170792 - L1MB3 LINE L1 -214 5960 5584 1548 80 0 0 chr9 132100652 132100839 -10170605 - AluSg/x SINE Alu -9 303 117 245 118 0 0 chr9 132100839 132100873 -10170571 - Alu SINE Alu -268 34 1 1929 196 46 108 chr9 132100873 132101047 -10170397 - L1MB3 LINE L1 -589 5585 5402 575 240 8 8 chr9 132101047 132101172 -10170272 - FLAM_A SINE Alu -6 127 3 1929 196 46 108 chr9 132101172 132101184 -10170260 - L1MB3 LINE L1 -772 5402 5391 2327 91 10 0 chr9 132101184 132101482 -10169962 - AluY SINE Alu -10 301 1 1929 196 46 108 chr9 132101482 132101730 -10169714 - L1MB3 LINE L1 -783 5391 5129 1805 157 7 42 chr9 132101730 132102036 -10169408 - AluJb SINE Alu -12 300 6 1929 196 46 108 chr9 132102036 132102069 -10169375 - L1MB3 LINE L1 -1045 5129 5166 2082 114 13 7 chr9 132102069 132102375 -10169069 - AluSx SINE Alu -4 308 1 1929 196 46 108 chr9 132102375 132102436 -10169008 - L1MB3 LINE L1 -1007 5167 5104 467 174 4 46 chr9 132102437 132102576 -10168868 - L1MB3 LINE L1 -2574 3572 3446 555 284 25 0 chr9 132102582 132102786 -10168658 - L1MB3 LINE L1 -2647 3499 3291 1897 155 3 3 chr9 132102831 132103121 -10168323 - AluSx SINE Alu -22 290 1 2249 100 27 0 chr9 132103160 132103461 -10167983 - AluSq SINE Alu -2 311 3 384 22 0 0 chr9 132103497 132103542 -10167902 + (TG)n Simple_repeat Simple_repeat 1 45 0 372 59 0 0 chr9 132103621 132103672 -10167772 + (TG)n Simple_repeat Simple_repeat 2 52 0 999 140 0 2 chr9 132103751 132103988 -10167456 - AluJb SINE Alu -20 292 17 433 266 28 23 chr9 132104004 132104181 -10167263 - L1MB3 LINE L1 -3308 2838 2661 287 261 26 26 chr9 132104186 132104301 -10167143 + L1MC/D LINE L1 5710 5824 -1984 307 208 28 69 chr9 132104304 132104376 -10167068 + L1MC/D LINE L1 5760 5828 -1980 1416 219 0 34 chr9 132104377 132104674 -10166770 - AluJo SINE Alu -15 297 11 1494 185 27 31 chr9 132104737 132104875 -10166569 + AluJo SINE Alu 1 138 -174 2466 85 3 0 chr9 132104875 132105181 -10166263 + AluSq SINE Alu 1 307 -6 1494 185 27 31 chr9 132105181 132105334 -10166110 + AluJo SINE Alu 138 291 -21 1082 222 92 32 chr9 132105346 132105630 -10165814 + AluJo SINE Alu 1 301 -1 625 224 63 0 chr9 132105662 132105805 -10165639 + FRAM SINE Alu 2 153 -13 312 380 8 0 chr9 132106312 132106433 -10165011 - L2 LINE L2 0 3272 3151 733 199 0 7 chr9 132106523 132106664 -10164780 - AluJb SINE Alu -171 141 2 1892 133 73 0 chr9 132107060 132107346 -10164098 - AluSc SINE Alu -2 307 1 2173 129 3 0 chr9 132107348 132107642 -10163802 - AluSx SINE Alu -17 295 1 408 317 55 25 chr9 132108474 132108676 -10162768 - MIR SINE MIR -5 257 50 235 0 0 0 chr9 132108823 132108849 -10162595 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 2295 88 0 3 chr9 132108849 132109132 -10162312 - AluSg SINE Alu -28 282 1 2241 115 13 0 chr9 132109178 132109482 -10161962 - AluSx SINE Alu 0 312 5 3153 161 61 41 chr9 132109484 132110185 -10161259 + L1MC1 LINE L1 5618 6332 -1 2224 132 0 0 chr9 132110785 132111096 -10160348 - AluSx SINE Alu -1 311 1 335 177 196 6 chr9 132111105 132111263 -10160181 - L1ME4a LINE L1 -4 6117 5930 2127 114 4 0 chr9 132111310 132111621 -10159823 - AluSg SINE Alu 0 312 1 439 176 118 0 chr9 132111624 132111709 -10159735 - AluJo/FLAM SINE Alu -180 132 38 834 165 0 0 chr9 132111806 132111939 -10159505 - FLAM_C SINE Alu 0 133 1 496 235 104 16 chr9 132111947 132112130 -10159314 - L1MC5 LINE L1 -36 7925 7727 748 226 79 0 chr9 132112180 132112344 -10159100 - AluJb SINE Alu -6 306 130 2094 95 4 4 chr9 132112478 132112741 -10158703 - AluSx SINE Alu -20 292 30 892 122 30 0 chr9 132112759 132112890 -10158554 - FLAM_C SINE Alu -8 135 1 432 0 0 0 chr9 132113588 132113636 -10157808 + (CA)n Simple_repeat Simple_repeat 1 48 0 2381 110 0 0 chr9 132113664 132113972 -10157472 + AluSx SINE Alu 1 308 -4 2034 117 7 7 chr9 132113974 132114265 -10157179 + AluSg SINE Alu 1 291 -19 199 238 56 103 chr9 132114665 132114791 -10156653 + MIR SINE MIR 111 230 -32 816 259 24 5 chr9 132115829 132116034 -10155410 + AluSx SINE Alu 2 210 -102 2146 120 7 3 chr9 132116149 132116450 -10154994 - AluSx SINE Alu -10 302 1 346 261 0 0 chr9 132116511 132116599 -10154845 - AluJb SINE Alu -168 134 47 602 279 54 38 chr9 132116807 132117047 -10154397 - MIR SINE MIR -13 249 6 2404 83 0 10 chr9 132117064 132117377 -10154067 - AluSg SINE Alu 0 310 1 891 176 33 13 chr9 132118875 132119028 -10152416 - FRAM SINE Alu -7 159 4 191 204 143 0 chr9 132119152 132119201 -10152243 - MIR SINE MIR -86 176 121 2269 88 10 20 chr9 132119249 132119546 -10151898 + AluSp SINE Alu 1 294 -19 1977 109 11 7 chr9 132119625 132119900 -10151544 + AluSx SINE Alu 19 294 -18 1046 130 90 6 chr9 132121100 132121277 -10150167 - AluSg/x SINE Alu -1 311 120 2058 147 0 7 chr9 132121281 132121588 -10149856 - AluSx SINE Alu -7 305 1 2309 103 3 0 chr9 132121591 132121892 -10149552 - AluSq SINE Alu -11 302 1 208 184 0 82 chr9 132122631 132122680 -10148764 - L2 LINE L2 -18 3295 3251 420 269 122 46 chr9 132122749 132122987 -10148457 + MER112 DNA MER1_type 1 256 0 338 281 137 13 chr9 132122993 132123146 -10148298 + MIR SINE MIR 3 174 -88 2243 99 0 33 chr9 132123223 132123525 -10147919 + AluSq SINE Alu 1 292 -21 207 0 0 0 chr9 132124541 132124564 -10146880 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 429 20 0 0 chr9 132124563 132124613 -10146831 + (TG)n Simple_repeat Simple_repeat 2 51 0 623 221 64 0 chr9 132125866 132126006 -10145438 + MIR SINE MIR 6 154 -108 851 91 126 21 chr9 132126006 132126149 -10145295 - MER46A DNA MER2_type 0 236 79 1311 96 17 0 chr9 132126196 132126374 -10145070 - AluSg/x SINE Alu -4 308 128 181 77 77 0 chr9 132126374 132126413 -10145031 + (GTTTG)n Simple_repeat Simple_repeat 4 45 0 1397 143 30 104 chr9 132126536 132126871 -10144573 - AluYb8 SINE Alu -4 314 5 1652 171 0 33 chr9 132126932 132127237 -10144207 + AluJb SINE Alu 1 295 -17 1120 83 0 0 chr9 132127241 132127374 -10144070 + AluSg SINE Alu 1 133 -177 2118 131 10 3 chr9 132127374 132127680 -10143764 + AluSx SINE Alu 1 308 -4 712 143 0 71 chr9 132128133 132128273 -10143171 + FLAM_C SINE Alu 1 130 -3 1881 115 3 51 chr9 132128281 132128418 -10143026 + AluSg1 SINE Alu 1 143 -166 1884 143 3 3 chr9 132128418 132128704 -10142740 + AluY SINE Alu 1 286 -25 1881 115 3 51 chr9 132128704 132128879 -10142565 + AluSg1 SINE Alu 143 298 -11 262 118 0 0 chr9 132129007 132129058 -10142386 - Alu SINE Alu 0 302 252 2020 134 17 0 chr9 132129104 132129395 -10142049 + AluSg SINE Alu 3 298 -12 1881 128 42 7 chr9 132129404 132129692 -10141752 + AluSx SINE Alu 1 298 -14 201 74 0 0 chr9 132129744 132129771 -10141673 + (T)n Simple_repeat Simple_repeat 1 27 0 471 88 0 0 chr9 132129876 132129944 -10141500 + AluSp/q SINE Alu 242 309 -4 189 243 0 68 chr9 132129998 132130072 -10141372 + L3 LINE CR1 1330 1398 -179 2120 158 0 0 chr9 132130197 132130507 -10140937 - AluSx SINE Alu -1 311 2 633 292 105 66 chr9 132130707 132131145 -10140299 + L2 LINE L2 2818 3272 0 2054 81 42 71 chr9 132131212 132131522 -10139922 - AluSp SINE Alu -12 301 1 1797 125 75 20 chr9 132131531 132131826 -10139618 - AluSx SINE Alu -1 311 1 298 349 38 8 chr9 132131840 132131972 -10139472 - L2 LINE L2 -1 3271 3136 496 247 96 59 chr9 132132280 132132353 -10139091 - MIR SINE MIR -33 229 160 2177 112 0 3 chr9 132132353 132132639 -10138805 - AluSx SINE Alu -7 305 21 496 247 96 59 chr9 132132639 132132784 -10138660 - MIR SINE MIR -102 160 3 2397 106 0 3 chr9 132133403 132133714 -10137730 + AluSx SINE Alu 1 310 -2 696 206 32 128 chr9 132133849 132134029 -10137415 + LTR37A LTR ERV1 59 255 -171 1633 177 3 35 chr9 132134029 132134345 -10137099 + AluJo SINE Alu 1 306 -6 696 206 32 128 chr9 132134345 132134377 -10137067 + LTR37A LTR ERV1 255 288 -138 1977 163 0 0 chr9 132134377 132134672 -10136772 + AluSx SINE Alu 1 295 -17 696 206 32 128 chr9 132134672 132134803 -10136641 + LTR37A LTR ERV1 288 370 -56 1753 146 3 78 chr9 132134831 132134982 -10136462 + AluJb SINE Alu 3 119 -193 2020 150 0 7 chr9 132134982 132135282 -10136162 + AluJb SINE Alu 1 298 -14 1753 146 3 78 chr9 132135282 132135451 -10135993 + AluJb SINE Alu 119 299 -13 840 88 0 0 chr9 132135452 132135554 -10135890 + AluSp SINE Alu 3 104 -209 573 98 33 0 chr9 132135554 132135646 -10135798 + AluSp/q SINE Alu 219 313 0 2606 54 0 0 chr9 132135654 132135952 -10135492 + AluY SINE Alu 1 298 -13 354 250 23 0 chr9 132135953 132136041 -10135403 + MIR SINE MIR 115 204 -58 331 170 0 0 chr9 132136041 132136094 -10135350 - Tigger1 DNA MER2_type 0 2418 2366 2133 116 3 3 chr9 132136099 132136393 -10135051 - AluSx SINE Alu -14 298 5 296 246 18 0 chr9 132136398 132136455 -10134989 - MIR SINE MIR -194 68 11 2362 60 43 10 chr9 132136500 132136800 -10134644 - AluY SINE Alu -1 310 1 1839 143 28 7 chr9 132136813 132137099 -10134345 - AluSx SINE Alu -20 292 1 256 309 178 10 chr9 132137300 132137604 -10133840 - L1MC/D LINE L1 -2075 5733 5379 311 275 77 0 chr9 132138319 132138410 -10133034 + MIR SINE MIR 117 214 -48 2402 97 0 0 chr9 132140752 132141052 -10130392 - AluSx SINE Alu -12 300 1 191 35 0 35 chr9 132141425 132141454 -10129990 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 831 322 95 18 chr9 132141510 132142015 -10129429 - L2 LINE L2 -52 3261 2714 1205 196 0 23 chr9 132142093 132142312 -10129132 - AluJb SINE Alu -12 300 87 2477 77 0 0 chr9 132142322 132142620 -10128824 - AluSc SINE Alu -9 300 3 1662 139 27 36 chr9 132142630 132142792 -10128652 - L1MD3 LINE L1 -298 7697 7535 2375 91 10 0 chr9 132142792 132143089 -10128355 - AluSq SINE Alu -13 300 1 1662 139 27 36 chr9 132143089 132143257 -10128187 - L1MD3 LINE L1 -460 7535 7370 855 146 0 15 chr9 132143261 132143398 -10128046 - AluJo SINE Alu -165 147 13 432 202 165 6 chr9 132143409 132143592 -10127852 - L1MD3 LINE L1 -747 7038 6837 339 253 0 55 chr9 132143617 132143708 -10127736 - L1MD3 LINE L1 -1106 6889 6804 262 307 11 0 chr9 132144259 132144347 -10127097 + MIR SINE MIR 60 148 -114 2364 82 0 10 chr9 132144588 132144892 -10126552 - AluY SINE Alu -9 302 2 183 42 0 0 chr9 132144892 132144916 -10126528 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2173 126 0 0 chr9 132144916 132145201 -10126243 - AluSq SINE Alu -28 285 1 2155 95 0 56 chr9 132145216 132145425 -10126019 - AluSg SINE Alu 0 327 141 2364 104 3 0 chr9 132145425 132145732 -10125712 - AluSp SINE Alu -4 309 2 2155 95 0 56 chr9 132145732 132145864 -10125580 - AluSg SINE Alu -186 141 3 2310 73 0 14 chr9 132145887 132146215 -10125229 - AluY SINE Alu 0 326 3 2008 118 56 0 chr9 132146217 132146505 -10124939 - AluSx SINE Alu -8 304 1 208 302 216 9 chr9 132146505 132146621 -10124823 - MIR SINE MIR -109 153 14 1859 143 12 50 chr9 132147168 132147490 -10123954 + AluSx SINE Alu 1 310 -2 2312 122 3 0 chr9 132147553 132147865 -10123579 + AluSp SINE Alu 1 313 0 272 242 0 102 chr9 132148184 132148312 -10123132 - FLAM_C SINE Alu -5 128 14 1800 164 10 20 chr9 132148456 132148760 -10122684 + AluSx SINE Alu 1 301 -11 2041 132 4 0 chr9 132148952 132149253 -10122191 + AluSx SINE Alu 1 302 0 1667 161 7 58 chr9 132149281 132149429 -10122015 + AluJo SINE Alu 1 126 -186 2571 64 0 13 chr9 132149429 132149740 -10121704 + AluY SINE Alu 1 307 -4 1667 161 7 58 chr9 132149740 132149901 -10121543 + AluJo SINE Alu 126 294 -18 251 255 56 37 chr9 132149902 132150063 -10121381 + L1ME4a LINE L1 5941 6104 -17 210 286 8 92 chr9 132150214 132150279 -10121165 + MER5B DNA MER1_type 1 53 -125 2276 98 0 3 chr9 132150279 132150575 -10120869 + AluSc SINE Alu 1 295 -14 210 286 8 92 chr9 132150575 132150628 -10120816 + MER5B DNA MER1_type 53 109 -69 624 218 38 8 chr9 132150857 132150990 -10120454 - FRAM SINE Alu -20 156 20 2297 96 0 10 chr9 132153451 132153754 -10117690 - AluSx SINE Alu -12 300 1 842 323 93 19 chr9 132154215 132154722 -10116722 - L2 LINE L2 -52 3261 2714 1205 196 0 23 chr9 132154802 132155021 -10116423 - AluJb SINE Alu -12 300 87 2425 86 0 3 chr9 132155031 132155333 -10116111 - AluSc SINE Alu -8 301 1 2530 67 13 0 chr9 132156172 132156471 -10114973 - AluSx SINE Alu -9 303 1 357 233 47 0 chr9 132157171 132157257 -10114187 - L2 LINE L2 -41 3231 3142 193 306 83 0 chr9 132157417 132157489 -10113955 - L2 LINE L2 -551 2763 2686 856 152 7 0 chr9 132157631 132157776 -10113668 + AluSg/x SINE Alu 162 307 -3 2311 108 0 3 chr9 132157779 132158075 -10113369 + AluSx SINE Alu 1 295 -17 282 356 20 20 chr9 132158250 132158396 -10113048 - MIR3 SINE MIR -37 171 26 233 286 39 13 chr9 132159333 132159410 -10112034 - L1MC/D LINE L1 -2217 5591 5513 2549 57 0 19 chr9 132159440 132159756 -10111688 - AluY SINE Alu -1 310 1 195 402 49 0 chr9 132159793 132159915 -10111529 + L2 LINE L2 2671 2798 -516 194 341 37 0 chr9 132159950 132160032 -10111412 + L2 LINE L2 2894 2978 -294 511 81 14 0 chr9 132160132 132160206 -10111238 - L1PA11 LINE L1 -180 5994 5920 331 293 216 11 chr9 132160216 132160318 -10111126 + L1MC4 LINE L1 7814 7894 -148 2459 63 0 10 chr9 132160318 132160618 -10110826 + AluY SINE Alu 2 298 -13 331 293 216 11 chr9 132160618 132160696 -10110748 + L1MC4 LINE L1 7894 8031 -11 298 247 103 0 chr9 132160872 132160991 -10110453 - MIR3 SINE MIR -53 155 18 2275 55 3 3 chr9 132162907 132163196 -10108248 + AluY SINE Alu 1 289 -22 189 206 48 0 chr9 132163370 132163433 -10108011 - L2 LINE L2 -694 2620 2555 225 239 0 0 chr9 132163624 132163670 -10107774 + CT-rich Low_complexity Low_complexity 3 48 0 447 279 50 14 chr9 132164665 132164805 -10106639 - MIR3 SINE MIR -44 164 20 2032 120 7 3 chr9 132165840 132166124 -10105320 - AluSx SINE Alu -27 285 1 195 42 0 0 chr9 132166124 132166148 -10105296 + (TA)n Simple_repeat Simple_repeat 2 25 0 1834 106 42 0 chr9 132166148 132166413 -10105031 - AluSq SINE Alu -14 299 24 1575 183 7 14 chr9 132166424 132166713 -10104731 - AluJo SINE Alu -25 287 1 180 278 52 41 chr9 132166797 132166894 -10104550 + L2 LINE L2 2787 2884 -430 368 232 113 45 chr9 132167475 132167652 -10103792 + MER5A DNA MER1_type 1 189 0 454 59 0 10 chr9 132167855 132168060 -10103384 + AluSc SINE Alu 1 300 -12 1884 133 44 0 chr9 132168062 132168355 -10103089 + AluSx SINE Alu 1 306 -6 848 153 7 0 chr9 132169180 132169317 -10102127 + AluSg/x SINE Alu 162 299 -11 748 113 35 0 chr9 132169317 132169432 -10102012 + L1PA11 LINE L1 6052 6170 -4 310 221 0 52 chr9 132169436 132169493 -10101951 - L1MC5 LINE L1 -261 7700 7645 2084 108 0 11 chr9 132169493 132169802 -10101642 + AluSx SINE Alu 1 306 0 310 221 0 52 chr9 132169802 132169820 -10101624 - L1MC5 LINE L1 -316 7645 7628 1438 182 82 7 chr9 132169949 132170229 -10101215 - AluJo SINE Alu -7 305 5 834 237 142 15 chr9 132170245 132170583 -10100861 - L1MB8 LINE L1 -1 6177 5797 2049 120 10 13 chr9 132170595 132170770 -10100674 - AluSg SINE Alu -2 308 133 2368 69 7 0 chr9 132170770 132171075 -10100369 - AluSp SINE Alu -5 308 2 2049 120 10 13 chr9 132171075 132171208 -10100236 - AluSg SINE Alu -177 133 1 265 347 48 8 chr9 132171280 132171404 -10100040 + L2 LINE L2 3185 3313 0 1781 177 41 39 chr9 132171451 132171813 -10099631 - THE1B LTR MaLR 0 364 2 215 346 37 0 chr9 132172147 132172228 -10099216 + MIR SINE MIR 108 191 -71 240 224 30 0 chr9 132172500 132172567 -10098877 + L1ME3A LINE L1 5687 5755 -429 982 113 0 0 chr9 132172580 132172713 -10098731 + FLAM_C SINE Alu 1 133 -10 496 278 11 17 chr9 132172716 132172896 -10098548 + L1ME3A LINE L1 5759 5937 -233 1755 141 0 32 chr9 132172904 132173216 -10098228 + AluSc SINE Alu 4 305 -4 183 330 55 0 chr9 132173425 132173516 -10097928 + MIR SINE MIR 60 155 -107 302 333 102 38 chr9 132174261 132174447 -10096997 + MIR SINE MIR 29 226 -36 1349 63 0 11 chr9 132176063 132176237 -10095207 - AluY SINE Alu -7 304 133 1940 90 3 47 chr9 132176237 132176559 -10094885 - AluY SINE Alu -3 308 1 2138 77 49 0 chr9 132176559 132176844 -10094600 - AluY SINE Alu -12 299 1 312 336 48 0 chr9 132176984 132177109 -10094335 + MIR SINE MIR 17 147 -115 233 233 33 17 chr9 132177498 132177558 -10093886 + L1ME3A LINE L1 6018 6078 -92 1487 134 0 45 chr9 132177588 132177834 -10093610 + AluSx SINE Alu 1 235 -77 2083 116 7 7 chr9 132177936 132178238 -10093206 - AluSx SINE Alu -8 304 3 1931 130 7 7 chr9 132178242 132178541 -10092903 - AluSx SINE Alu -13 299 1 2003 118 7 0 chr9 132178584 132178871 -10092573 - AluSx SINE Alu -19 293 5 186 43 0 0 chr9 132178886 132178909 -10092535 + (TA)n Simple_repeat Simple_repeat 1 23 0 1876 133 3 7 chr9 132178909 132179194 -10092250 - AluJb SINE Alu -28 284 1 351 291 12 0 chr9 132179960 132180046 -10091398 - L2 LINE L2 -2 3270 3184 232 325 12 12 chr9 132181249 132181329 -10090115 + MIR SINE MIR 157 236 -26 1954 113 3 14 chr9 132181441 132181753 -10089691 - AluSg SINE Alu 0 309 1 1709 103 0 8 chr9 132181754 132181996 -10089448 - AluSg SINE Alu -14 296 57 1778 107 0 16 chr9 132182049 132182302 -10089142 - AluSq SINE Alu -6 307 59 1298 104 0 41 chr9 132182973 132183184 -10088260 + AluSg/x SINE Alu 97 300 -10 2119 84 0 43 chr9 132183184 132183506 -10087938 + AluSc SINE Alu 1 308 -1 265 281 178 22 chr9 132183552 132183695 -10087749 + MIR SINE MIR 7 167 -65 2272 47 7 0 chr9 132183695 132183994 -10087450 - AluY SINE Alu 0 301 1 240 243 0 0 chr9 132184149 132184223 -10087221 + GA-rich Low_complexity Low_complexity 3 76 0 466 283 73 26 chr9 132185019 132185210 -10086234 + MIR SINE MIR 60 259 -3 281 280 85 25 chr9 132186749 132186867 -10084577 + MIR SINE MIR 28 152 -110 191 298 0 53 chr9 132189683 132189740 -10081704 - L2 LINE L2 -4 3309 3256 219 167 24 0 chr9 132190284 132190326 -10081118 + MIR SINE MIR 79 121 -141 199 213 0 21 chr9 132193862 132193909 -10077535 - MIR SINE MIR -73 135 90 380 322 14 20 chr9 132194268 132194414 -10077030 + L1MC4a LINE L1 5691 5835 -1973 * 440 239 21 122 chr9 132194399 132194480 -10076964 + L1MB7 LINE L1 3 56 -6803 852 167 0 0 chr9 132194480 132194612 -10076832 + AluJo SINE Alu 2 133 -169 440 239 21 122 chr9 132194612 132194718 -10076726 + L1MB7 LINE L1 56 171 -6688 764 209 0 22 chr9 132194719 132194858 -10076586 + AluJo SINE Alu 1 136 -176 440 242 8 0 chr9 132194859 132194979 -10076465 + L1MB7 LINE L1 1778 1898 -4957 835 162 7 27 chr9 132194984 132195132 -10076312 + AluJo SINE Alu 137 281 -31 186 43 0 0 chr9 132195134 132195157 -10076287 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 382 252 52 0 chr9 132195167 132195302 -10076142 + L1MB7 LINE L1 2066 2207 -4752 697 207 50 90 chr9 132195403 132195587 -10075857 + L1MB7 LINE L1 3410 3600 -3377 1834 109 3 87 chr9 132195587 132195725 -10075719 + AluSx SINE Alu 1 98 -214 2296 86 7 0 chr9 132195725 132196027 -10075417 + AluY SINE Alu 2 305 -6 1834 109 3 87 chr9 132196027 132196210 -10075234 + AluSx SINE Alu 98 295 -17 697 207 50 90 chr9 132196210 132196395 -10075049 + L1MB7 LINE L1 3600 6411 -566 2294 84 0 3 chr9 132196402 132196699 -10074745 + AluSg SINE Alu 1 296 -14 2048 110 3 10 chr9 132196719 132197018 -10074426 + AluY SINE Alu 1 297 -14 705 236 83 70 chr9 132197018 132197216 -10074228 + L1MB7 LINE L1 6678 6872 -123 1800 157 3 10 chr9 132197216 132197529 -10073915 + AluJo SINE Alu 1 311 -1 2020 121 3 13 chr9 132197536 132197842 -10073602 + AluSx SINE Alu 1 303 -9 705 236 83 70 chr9 132197842 132197948 -10073496 + L1MB7 LINE L1 6877 6994 -1 908 242 0 7 chr9 132198060 132198345 -10073099 + AluSx SINE Alu 27 309 -3 1275 211 0 10 chr9 132198399 132198697 -10072747 + AluSx SINE Alu 1 295 -17 1954 118 0 10 chr9 132198699 132199003 -10072441 + AluY SINE Alu 1 301 -10 2219 109 0 3 chr9 132199794 132200096 -10071348 + AluSx SINE Alu 1 301 -11 219 222 0 37 chr9 132200696 132200750 -10070694 + MIR3 SINE MIR 108 159 -49 572 267 26 41 chr9 132200999 132201196 -10070248 + MIR SINE MIR 6 202 -58 234 269 51 13 chr9 132202053 132202131 -10069313 - MIR SINE MIR -80 182 102 1458 164 45 45 chr9 132202272 132202412 -10069032 + AluJo SINE Alu 2 141 -171 2090 88 14 7 chr9 132202412 132202708 -10068736 + AluY SINE Alu 1 298 -13 1458 164 45 45 chr9 132202708 132202859 -10068585 + AluJo SINE Alu 140 293 -19 2153 61 0 0 chr9 132202860 132203121 -10068323 + AluY SINE Alu 36 296 -15 1994 97 42 7 chr9 132203130 132203419 -10068025 + AluSx SINE Alu 1 299 -13 2043 140 0 13 chr9 132203419 132203733 -10067711 + AluSx SINE Alu 1 310 -2 300 83 0 0 chr9 132203747 132203795 -10067649 + (CAGG)n Simple_repeat Simple_repeat 2 49 0 201 234 0 0 chr9 132204054 132204118 -10067326 + (CTA)n Simple_repeat Simple_repeat 2 65 0 218 214 0 0 chr9 132205169 132205211 -10066233 + (CAA)n Simple_repeat Simple_repeat 1 42 0 249 202 55 0 chr9 132205290 132205355 -10066089 - MIR SINE MIR -68 140 84 252 293 28 38 chr9 132205438 132205544 -10065900 - MIR SINE MIR -77 185 81 182 227 23 0 chr9 132205811 132205855 -10065589 - MIR SINE MIR -55 153 109 289 217 24 54 chr9 132206338 132206504 -10064940 + (CCCG)n Simple_repeat Simple_repeat 1 161 0 650 127 70 3 chr9 132206969 132207109 -10064335 - L1MA7 LINE L1 -29 6268 6102 991 123 0 31 chr9 132207109 132207272 -10064172 - AluSg/x SINE Alu -15 295 138 947 120 8 0 chr9 132207695 132207828 -10063616 - AluJb SINE Alu -178 134 1 2322 74 3 0 chr9 132207831 132208127 -10063317 - AluY SINE Alu -14 297 1 811 165 39 6 chr9 132208135 132208317 -10063127 + Tigger2 DNA MER2_type 54 241 -2477 2154 113 3 3 chr9 132208318 132208629 -10062815 + AluSx SINE Alu 1 311 -1 524 297 0 6 chr9 132208629 132208794 -10062650 + AluSc SINE Alu 124 287 -22 2069 181 52 40 chr9 132208807 132209208 -10062236 + L1MB8 LINE L1 5611 6021 -157 1774 169 0 22 chr9 132209208 132209521 -10061923 - AluJo SINE Alu 0 312 7 2069 181 52 40 chr9 132209521 132209643 -10061801 + L1MB8 LINE L1 6021 6140 -38 1050 147 55 0 chr9 132209643 132209806 -10061638 - AluJo SINE Alu -9 303 132 421 121 0 0 chr9 132209806 132209864 -10061580 + Alu SINE Alu 234 291 -21 743 177 0 54 chr9 132209865 132209995 -10061449 - AluJo SINE Alu -179 123 1 2240 90 0 31 chr9 132210032 132210355 -10061089 + AluSq SINE Alu 1 313 0 196 267 33 17 chr9 132210448 132210508 -10060936 - L2 LINE L2 -8 3264 3204 2376 61 3 0 chr9 132210921 132211215 -10060229 - AluY SINE Alu -16 295 1 285 331 33 13 chr9 132211452 132211603 -10059841 - MIR SINE MIR -97 165 12 267 279 172 8 chr9 132212143 132212265 -10059179 - MIR3 SINE MIR -37 171 30 734 208 0 8 chr9 132212496 132212626 -10058818 + AluJo/FLAM SINE Alu 1 129 -173 2198 78 0 45 chr9 132212627 132212790 -10058654 - AluSx SINE Alu -17 295 151 2057 122 10 7 chr9 132212790 132213084 -10058360 - AluSx SINE Alu -17 295 1 2198 78 0 45 chr9 132213084 132213229 -10058215 - AluSx SINE Alu -161 151 1 27 0 0 0 chr9 132213234 132213261 -10058183 + AT_rich Low_complexity Low_complexity 1 27 0 1965 113 0 11 chr9 132214098 132214414 -10057030 + AluSq SINE Alu 2 314 0 1176 122 0 0 chr9 132214414 132214578 -10056866 + AluSg/x SINE Alu 131 294 -18 2109 113 0 7 chr9 132214600 132214910 -10056534 + AluY SINE Alu 3 310 -1 408 20 0 0 chr9 132214924 132214973 -10056471 + (CA)n Simple_repeat Simple_repeat 2 50 0 2306 90 3 0 chr9 132215061 132215362 -10056082 + AluSx SINE Alu 11 312 0 346 304 10 10 chr9 132215413 132215515 -10055929 - MIR SINE MIR -113 149 48 215 300 38 25 chr9 132216216 132216296 -10055148 - MIR SINE MIR -64 144 64 201 303 56 34 chr9 132218150 132218193 -10053251 + MIR SINE MIR 102 143 -119 2066 114 0 25 chr9 132218193 132218510 -10052934 + AluSg SINE Alu 1 309 -1 201 303 56 34 chr9 132218510 132218555 -10052889 + MIR SINE MIR 143 192 -70 2152 116 0 0 chr9 132218624 132218927 -10052517 + AluSx SINE Alu 1 303 -9 2134 117 0 3 chr9 132218929 132219228 -10052216 + AluSc SINE Alu 3 300 -9 1952 123 39 0 chr9 132219543 132219828 -10051616 + AluSq SINE Alu 1 296 -17 241 276 152 9 chr9 132221024 132221129 -10050315 + MIR SINE MIR 56 175 -87 241 283 101 10 chr9 132222692 132222791 -10048653 + L2 LINE L2 3180 3287 -26 262 325 18 35 chr9 132223287 132223348 -10048096 - MIR SINE MIR -61 147 89 365 315 146 9 chr9 132223348 132223561 -10047883 + MIR SINE MIR 2 243 -19 201 311 22 11 chr9 132223595 132223685 -10047759 + L2 LINE L2 3142 3232 -40 2340 89 3 0 chr9 132223797 132224099 -10047345 + AluSx SINE Alu 1 303 -9 2343 95 0 0 chr9 132224437 132224742 -10046702 + AluSx SINE Alu 1 305 -7 198 103 0 0 chr9 132224810 132224839 -10046605 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 223 329 14 0 chr9 132224896 132224969 -10046475 + L2 LINE L2 3238 3311 -2 1363 181 12 89 chr9 132225812 132226150 -10045294 - AluJb SINE Alu 0 312 1 2109 85 68 0 chr9 132226153 132226434 -10045010 - AluSx SINE Alu -12 300 1 2018 133 0 29 chr9 132226437 132226746 -10044698 - AluSx SINE Alu -12 300 1 243 297 125 39 chr9 132227110 132227238 -10044206 - MIR SINE MIR 0 262 124 201 322 168 0 chr9 132227910 132228053 -10043391 - MIR SINE MIR -81 181 15 4022 83 14 25 chr9 132228291 132228845 -10042599 + LTR14 LTR ERVK 1 548 0 192 325 78 0 chr9 132229787 132229864 -10041580 + MIR3 SINE MIR 101 183 -25 366 268 31 10 chr9 132231004 132231101 -10040343 + MIR SINE MIR 84 182 -80 2363 77 0 0 chr9 132231616 132231914 -10039530 - AluY SINE Alu -13 298 1 2429 43 0 17 chr9 132231914 132232214 -10039230 - AluY SINE Alu -13 298 2 1914 141 7 3 chr9 132232342 132232632 -10038812 - AluSx SINE Alu -21 291 1 239 197 14 56 chr9 132233281 132233352 -10038092 + MIR SINE MIR 81 148 -60 1818 127 0 0 chr9 132234049 132234301 -10037143 - AluSx SINE Alu -17 295 44 857 200 15 5 chr9 132234301 132234496 -10036948 - L1M2 LINE L1 -714 5577 5381 379 293 28 9 chr9 132234840 132234946 -10036498 + MIR SINE MIR 84 191 -71 2289 73 0 10 chr9 132235454 132235754 -10035690 - AluY SINE Alu -14 297 1 2394 43 0 20 chr9 132235754 132236055 -10035389 - AluY SINE Alu -13 298 2 1844 148 7 7 chr9 132236183 132236474 -10034970 - AluSx SINE Alu -21 291 1 250 289 11 44 chr9 132237136 132237226 -10034218 + MIR3 SINE MIR 81 167 -41 2167 112 0 3 chr9 132237917 132238211 -10033233 - AluSg SINE Alu -17 293 1 255 247 75 21 chr9 132238216 132238309 -10033135 - L1ME3A LINE L1 0 6170 6073 295 287 93 19 chr9 132238488 132238596 -10032848 + L2 LINE L2 3137 3252 -20 228 297 0 20 chr9 132240328 132240429 -10031015 + G-rich Low_complexity Low_complexity 5 103 0 1085 106 41 18 chr9 132243267 132243437 -10028007 + AluSp SINE Alu 124 297 -16 1969 118 3 19 chr9 132243456 132243769 -10027675 + AluSx SINE Alu 1 308 -4 281 163 0 88 chr9 132243775 132243855 -10027589 + MER49 LTR ERV1 314 386 -537 207 0 0 0 chr9 132243862 132243885 -10027559 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1818 142 122 32 chr9 132243886 132244040 -10027404 + MER49 LTR ERV1 352 491 -432 1231 165 133 32 chr9 132244040 132244319 -10027125 + AluJb SINE Alu 1 307 -5 1818 142 122 32 chr9 132244319 132244565 -10026879 + MER49 LTR ERV1 491 788 -135 2027 209 145 58 chr9 132244573 132245013 -10026431 - LTR28 LTR ERV1 -1 1019 619 2111 96 0 10 chr9 132245013 132245339 -10026105 - AluY SINE Alu 0 324 2 2027 209 145 58 chr9 132245339 132245665 -10025779 - LTR28 LTR ERV1 -401 619 109 373 229 221 26 chr9 132245666 132245827 -10025617 - LTR28 LTR ERV1 -286 178 1 * 461 171 24 57 chr9 132245827 132245931 -10025513 + MER49 LTR ERV1 815 914 -9 2042 123 0 7 chr9 132245954 132246256 -10025188 - AluSg SINE Alu -10 300 1 2000 100 0 4 chr9 132246256 132246535 -10024909 - AluSq SINE Alu -34 279 1 1940 104 32 19 chr9 132246545 132246854 -10024590 - AluSp SINE Alu 0 313 1 196 189 38 19 chr9 132247075 132247128 -10024316 - MER5B DNA MER1_type -108 70 17 202 282 26 39 chr9 132247130 132247208 -10024236 - MER5A DNA MER1_type -79 110 34 2100 114 0 10 chr9 132247336 132247643 -10023801 + AluSg SINE Alu 1 304 -6 227 298 0 43 chr9 132248029 132248123 -10023321 + G-rich Low_complexity Low_complexity 5 94 0 1628 131 4 22 chr9 132248257 132248524 -10022920 + AluSx SINE Alu 36 297 -15 290 319 60 12 chr9 132248645 132248811 -10022633 - L2 LINE L2 -293 2979 2806 237 290 21 32 chr9 132248825 132248918 -10022526 + MIR3 SINE MIR 85 176 -32 268 333 37 9 chr9 132248931 132249039 -10022405 - L3 LINE CR1 -44 1533 1423 330 277 185 43 chr9 132251002 132251305 -10020139 - L3 LINE CR1 -37 1540 1195 1626 152 33 18 chr9 132251317 132251593 -10019851 + AluJo SINE Alu 12 291 -21 468 387 114 3 chr9 132251605 132251725 -10019719 + L1MEd LINE L1 700 805 -5314 1647 96 135 19 chr9 132251725 132251985 -10019459 - AluSg SINE Alu -20 290 1 468 387 114 3 chr9 132251985 132252011 -10019433 + L1MEd LINE L1 805 827 -5292 1926 122 57 0 chr9 132252011 132252290 -10019154 + AluSx SINE Alu 3 297 -15 468 387 114 3 chr9 132252290 132252439 -10019005 + L1MEd LINE L1 827 1029 -5090 2446 44 0 19 chr9 132252634 132252950 -10018494 + AluY SINE Alu 1 310 -1 252 358 98 0 chr9 132253009 132253132 -10018312 + MIR3 SINE MIR 37 171 -37 673 284 128 0 chr9 132253191 132253402 -10018042 + MIR SINE MIR 13 250 -12 519 311 7 26 chr9 132255813 132255964 -10015480 - MIR SINE MIR -83 179 32 416 324 99 6 chr9 132256406 132256588 -10014856 + MIR SINE MIR 30 228 -34 249 310 1 0 chr9 132256825 132256909 -10014535 + MIR SINE MIR 37 122 -86 342 344 150 24 chr9 132257142 132257523 -10013921 + L2 LINE L2 2843 3271 -1 219 310 23 11 chr9 132257823 132257910 -10013534 + L2 LINE L2 3168 3255 -17 216 67 0 0 chr9 132257910 132257940 -10013504 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 474 336 102 13 chr9 132258202 132258428 -10013016 - MIR SINE MIR -13 249 4 234 299 11 46 chr9 132258588 132258675 -10012769 - L3 LINE CR1 -95 1482 1399 868 313 199 5 chr9 132259452 132259874 -10011570 - L1ME4a LINE L1 -1 6120 5617 2289 96 0 0 chr9 132259875 132260177 -10011267 - AluSg SINE Alu -8 302 1 260 232 143 18 chr9 132260182 132260294 -10011150 - L1ME3A LINE L1 0 6170 6045 316 293 94 0 chr9 132260454 132260560 -10010884 + L2 LINE L2 3137 3252 -20 228 297 0 20 chr9 132262708 132262809 -10008635 + G-rich Low_complexity Low_complexity 5 103 0 21 0 0 0 chr9 132263411 132263432 -10008012 + GC_rich Low_complexity Low_complexity 1 21 0 2220 71 3 17 chr9 132265505 132265802 -10005642 + AluSp SINE Alu 1 293 -20 1192 77 46 52 chr9 132265804 132265938 -10005506 + MER30 DNA MER1_type 3 137 -93 2168 98 7 0 chr9 132265938 132266235 -10005209 - AluSg SINE Alu -11 299 1 1192 77 46 52 chr9 132266235 132266294 -10005150 + MER30 DNA MER1_type 137 195 -35 2087 85 0 49 chr9 132266334 132266641 -10004803 + AluSx SINE Alu 3 294 -18 1898 125 27 3 chr9 132266870 132267167 -10004277 - AluSq SINE Alu -8 305 2 186 250 0 0 chr9 132267381 132267425 -10004019 + L2 LINE L2 3218 3261 -11 650 112 0 0 chr9 132267843 132267932 -10003512 - AluSg/x SINE Alu -10 302 214 2237 98 3 0 chr9 132268488 132268784 -10002660 - AluSq SINE Alu -16 297 1 541 300 64 56 chr9 132268892 132269328 -10002116 - L2 LINE L2 -250 3063 2627 408 53 0 63 chr9 132269328 132269423 -10002021 + (TA)n Simple_repeat Simple_repeat 2 90 0 1866 131 27 3 chr9 132269819 132270116 -10001328 - AluSq SINE Alu -8 305 2 269 323 93 85 chr9 132270126 132270374 -10001070 + MIR SINE MIR 7 256 -6 650 112 0 0 chr9 132270794 132270883 -10000561 - AluSg/x SINE Alu -10 302 214 2177 86 0 20 chr9 132271449 132271752 -9999692 - AluSq SINE Alu -16 297 1 761 95 0 60 chr9 132271754 132271838 -9999606 - AluSc SINE Alu -95 214 137 1457 124 12 99 chr9 132271838 132272160 -9999284 - AluSx SINE Alu -18 294 1 761 95 0 60 chr9 132272160 132272191 -9999253 - AluSc SINE Alu -172 137 106 2329 65 3 7 chr9 132272191 132272498 -9998946 - AluY SINE Alu -5 306 1 1296 207 115 4 chr9 132272510 132272780 -9998664 - AluJo SINE Alu -2 300 1 304 308 83 38 chr9 132272789 132272878 -9998566 - L1ME LINE L1 -341 5821 5723 1538 138 52 24 chr9 132272878 132273167 -9998277 - AluJb SINE Alu -15 297 1 304 308 83 38 chr9 132273167 132273210 -9998234 - L1ME LINE L1 -439 5723 5683 2171 107 0 13 chr9 132273217 132273525 -9997919 - AluSx SINE Alu -8 304 1 1677 139 10 17 chr9 132273525 132273813 -9997631 - AluSx SINE Alu -16 296 11 2054 128 0 10 chr9 132273875 132274181 -9997263 - AluSg SINE Alu -7 303 1 1909 133 7 7 chr9 132274210 132274504 -9996940 - AluSq SINE Alu -19 294 1 909 119 0 30 chr9 132274509 132274643 -9996801 - FLAM_C SINE Alu -2 131 2 1699 178 13 7 chr9 132274832 132275130 -9996314 - AluSx SINE Alu -12 300 1 2131 94 7 10 chr9 132275241 132275539 -9995905 - AluY SINE Alu -14 297 1 2212 90 3 7 chr9 132275817 132276117 -9995327 + AluSx SINE Alu 1 299 -13 1248 97 0 0 chr9 132276117 132276282 -9995162 + AluSq SINE Alu 134 298 -15 422 301 36 68 chr9 132277179 132277398 -9994046 - L3 LINE CR1 -229 1348 1137 958 246 24 5 chr9 132277402 132277613 -9993831 - MER20 DNA MER1_type 0 219 5 1841 149 0 0 chr9 132277962 132278244 -9993200 - AluJb SINE Alu -19 293 12 351 331 48 21 chr9 132278489 132278634 -9992810 + MIR SINE MIR 31 179 -83 2279 76 3 0 chr9 132279047 132279337 -9992107 + AluY SINE Alu 3 293 -18 56 67 0 0 chr9 132279839 132279944 -9991500 + AT_rich Low_complexity Low_complexity 1 105 0 850 296 101 50 chr9 132280091 132280574 -9990870 + MLT1J LTR MaLR 1 508 -3 289 231 46 0 chr9 132281315 132281380 -9990064 - MER66B LTR ERV1 -142 344 277 2929 254 53 12 chr9 132281870 132282837 -9988607 - L1M4 LINE L1 -1061 1944 733 2682 16 0 0 chr9 132282871 132283174 -9988270 - AluYa5 SINE Alu -8 303 1 1213 155 7 92 chr9 132283177 132283208 -9988236 - MLT1D LTR MaLR -230 275 243 1970 118 21 0 chr9 132283208 132283497 -9987947 - AluSg SINE Alu -15 295 1 1213 155 7 92 chr9 132283497 132283736 -9987708 - MLT1D LTR MaLR -262 243 28 851 299 168 19 chr9 132283766 132284190 -9987254 - L2 LINE L2 -445 2869 2383 227 270 0 68 chr9 132284529 132284603 -9986841 - MIR SINE MIR -88 174 106 604 208 6 6 chr9 132284706 132284884 -9986560 + (CA)n Simple_repeat Simple_repeat 1 178 0 271 191 12 12 chr9 132284895 132284979 -9986465 + (CA)n Simple_repeat Simple_repeat 1 84 0 580 165 0 30 chr9 132285015 132285179 -9986265 + (CA)n Simple_repeat Simple_repeat 1 159 0 363 312 32 45 chr9 132285428 132285582 -9985862 - MIR SINE MIR -13 249 98 1980 138 0 0 chr9 132285924 132286214 -9985230 - AluSx SINE Alu -5 307 18 636 146 0 10 chr9 132286376 132286479 -9984965 + FLAM_A SINE Alu 29 130 -12 368 181 129 26 chr9 132286540 132286656 -9984788 - MLT1J2 LTR MaLR -275 175 48 242 362 116 29 chr9 132286856 132286994 -9984450 + L2 LINE L2 3122 3271 -1 1860 130 3 30 chr9 132287098 132287398 -9984046 - AluJb SINE Alu -20 292 1 2086 121 3 0 chr9 132287480 132287777 -9983667 - AluSx SINE Alu -14 298 1 205 244 0 0 chr9 132287830 132287871 -9983573 - L2 LINE L2 0 3313 3273 232 299 0 11 chr9 132288020 132288107 -9983337 + HsTC2 DNA Tc2 1 86 -1812 587 14 14 0 chr9 132288154 132288226 -9983218 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2160 92 0 0 chr9 132288226 132288507 -9982937 - AluSq SINE Alu -32 281 1 185 339 0 0 chr9 132288815 132288874 -9982570 - MIR SINE MIR -190 72 14 292 357 18 0 chr9 132288920 132289032 -9982412 - MIR SINE MIR -62 146 33 748 192 0 0 chr9 132289404 132289534 -9981910 + FLAM_C SINE Alu 2 131 -12 2245 107 0 0 chr9 132289543 132289853 -9981591 + AluSg SINE Alu 1 310 0 285 210 0 70 chr9 132290090 132290147 -9981297 - MIR SINE MIR -54 154 118 2054 108 3 17 chr9 132290147 132290443 -9981001 + AluSx SINE Alu 1 292 -20 285 210 0 70 chr9 132290443 132290456 -9980988 - MIR SINE MIR -90 118 106 304 270 9 52 chr9 132290652 132290767 -9980677 - MIR SINE MIR -81 127 18 2156 119 7 0 chr9 132290860 132291170 -9980274 - AluSx SINE Alu 0 312 1 2229 91 0 3 chr9 132291360 132291656 -9979788 - AluY SINE Alu -16 295 1 290 305 0 0 chr9 132291755 132291850 -9979594 - L1M4 LINE L1 -3126 3020 2926 1447 183 12 0 chr9 132291963 132292220 -9979224 + AluJo SINE Alu 37 296 -16 253 200 17 17 chr9 132293125 132293185 -9978259 - MER5A DNA MER1_type 0 189 130 323 307 40 0 chr9 132294081 132294182 -9977262 + MIR SINE MIR 59 163 -99 1505 136 87 0 chr9 132294189 132294454 -9976990 + AluJo SINE Alu 25 312 0 309 201 144 0 chr9 132294718 132294827 -9976617 - MIR3 SINE MIR -41 167 40 273 217 60 12 chr9 132295150 132295233 -9976211 - MLT1J LTR MaLR -178 333 247 365 253 40 33 chr9 132295346 132295496 -9975948 - MLT1J LTR MaLR -331 180 30 266 241 0 0 chr9 132295671 132295725 -9975719 + L2 LINE L2 3249 3302 -11 2107 127 7 0 chr9 132295816 132296124 -9975320 - AluSx SINE Alu -2 310 1 241 217 0 0 chr9 132296129 132296175 -9975269 + CT-rich Low_complexity Low_complexity 1 46 0 2132 125 0 10 chr9 132296175 132296486 -9974958 - AluSg SINE Alu -2 308 1 1472 146 26 53 chr9 132296487 132296677 -9974767 - AluJb SINE Alu -7 305 124 2233 107 0 3 chr9 132296677 132296985 -9974459 + AluSq SINE Alu 1 307 -6 1472 146 26 53 chr9 132296985 132297096 -9974348 - AluJb SINE Alu -188 124 12 383 269 106 25 chr9 132297417 132297577 -9973867 - MIR SINE MIR -69 193 21 307 238 238 0 chr9 132298464 132298586 -9972858 - L2 LINE L2 0 3272 3122 2155 105 7 3 chr9 132298811 132299116 -9972328 + AluSq SINE Alu 1 306 -7 533 292 158 36 chr9 132299125 132299536 -9971908 - L2 LINE L2 -4 3309 2849 453 277 40 103 chr9 132299578 132300007 -9971437 - MLT1J LTR MaLR 0 511 110 2231 106 0 3 chr9 132300014 132300326 -9971118 - AluSq SINE Alu -2 311 1 298 194 31 92 chr9 132301343 132301401 -9970043 + MIR SINE MIR 62 113 -95 2156 124 0 0 chr9 132301401 132301708 -9969736 - AluSx SINE Alu -5 307 1 298 194 31 92 chr9 132301708 132301747 -9969697 + MIR SINE MIR 113 153 -55 348 266 80 9 chr9 132301928 132302041 -9969403 + L2 LINE L2 3136 3256 -16 24 0 0 0 chr9 132302271 132302295 -9969149 + GC_rich Low_complexity Low_complexity 1 24 0 197 278 181 16 chr9 132302741 132302989 -9968455 - L2 LINE L2 -169 3103 2815 200 288 78 94 chr9 132304296 132304423 -9967021 + MER5A DNA MER1_type 2 127 -62 1934 133 13 7 chr9 132304423 132304723 -9966721 - AluSx SINE Alu -10 302 1 200 288 78 94 chr9 132304723 132304786 -9966658 + MER5A DNA MER1_type 127 189 0 223 316 113 0 chr9 132304821 132304954 -9966490 + MIR SINE MIR 25 172 -90 2104 132 0 0 chr9 132305048 132305358 -9966086 - AluSx SINE Alu -2 310 1 751 237 193 44 chr9 132305975 132306200 -9965244 + MLT1K LTR MaLR 220 509 -79 3025 109 24 5 chr9 132306200 132306620 -9964824 - MSTA LTR MaLR 0 428 1 751 237 193 44 chr9 132306620 132306715 -9964729 + MLT1K LTR MaLR 509 588 0 201 281 0 0 chr9 132306756 132306813 -9964631 - L2 LINE L2 -8 3264 3208 220 316 7 58 chr9 132306939 132307078 -9964366 - L2 LINE L2 -213 3059 2928 338 287 122 39 chr9 132307178 132307359 -9964085 - MIR SINE MIR -3 259 64 1509 166 31 21 chr9 132307410 132307699 -9963745 - AluJo SINE Alu -20 292 1 321 218 38 83 chr9 132308895 132309028 -9962416 + L2 LINE L2 3146 3272 0 1153 158 25 54 chr9 132309052 132309188 -9962256 + L1MB3 LINE L1 5676 5804 -379 2182 95 0 7 chr9 132309188 132309482 -9961962 - AluSx SINE Alu -20 292 1 1153 158 25 54 chr9 132309482 132309585 -9961859 + L1MB3 LINE L1 5804 5908 -275 576 151 47 19 chr9 132309585 132309691 -9961753 + FLAM_C SINE Alu 1 109 -34 1038 147 50 11 chr9 132309691 132309928 -9961516 + L1MB3 LINE L1 5919 6169 -2 2099 111 0 22 chr9 132309954 132310134 -9961310 - AluSx SINE Alu -3 309 137 2009 62 55 48 chr9 132310134 132310426 -9961018 - AluSc SINE Alu -15 294 1 2099 111 0 22 chr9 132310426 132310561 -9960883 - AluSx SINE Alu -175 137 1 675 221 93 25 chr9 132310592 132310872 -9960572 - L1MC5 LINE L1 -44 7917 7619 34 72 0 0 chr9 132310946 132311015 -9960429 + AT_rich Low_complexity Low_complexity 1 69 0 830 272 97 43 chr9 132311082 132311527 -9959917 - L1MC5 LINE L1 -389 7572 7104 1497 113 128 27 chr9 132311531 132311823 -9959621 - AluSx SINE Alu 0 318 1 2402 84 3 0 chr9 132312223 132312534 -9958910 + AluSq SINE Alu 1 312 -1 205 221 15 73 chr9 132312833 132312901 -9958543 - L2 LINE L2 -12 3301 3238 203 259 3 54 chr9 132312895 132312974 -9958470 + MIR SINE MIR 24 101 -107 * 362 190 0 50 chr9 132313066 132313166 -9958278 + MLT1H LTR MaLR 50 144 -405 271 197 16 0 chr9 132313477 132313538 -9957906 + MIR SINE MIR 146 207 -55 1534 154 16 69 chr9 132313619 132313924 -9957520 + AluSx SINE Alu 1 289 -23 340 344 89 0 chr9 132314086 132314266 -9957178 - L3 LINE CR1 -3 1574 1379 2077 136 0 3 chr9 132314268 132314578 -9956866 - AluSq SINE Alu -4 309 1 307 238 99 93 chr9 132314652 132314789 -9956655 + MIR SINE MIR 20 160 -102 1807 123 26 39 chr9 132314789 132315099 -9956345 + AluJb SINE Alu 1 306 -6 307 238 99 93 chr9 132315099 132315133 -9956311 + MIR SINE MIR 160 192 -70 2438 86 0 0 chr9 132315271 132315574 -9955870 - AluSq SINE Alu -10 303 1 235 331 177 17 chr9 132315699 132315880 -9955564 - L2 LINE L2 -29 3284 3075 307 352 36 26 chr9 132315899 132316092 -9955352 + L3 LINE CR1 981 1175 -402 2349 95 0 16 chr9 132316155 132316472 -9954972 - AluSx SINE Alu 0 312 1 448 287 101 11 chr9 132316472 132316660 -9954784 - MIR SINE MIR -56 206 2 431 275 25 0 chr9 132316684 132316804 -9954640 + MER63 DNA MER1_type 2 750 -86 333 361 14 7 chr9 132317165 132317309 -9954135 + MIR3 SINE MIR 48 192 -16 432 0 0 0 chr9 132317579 132317627 -9953817 + (CA)n Simple_repeat Simple_repeat 2 49 0 1795 139 39 0 chr9 132318058 132318339 -9953105 - AluJo SINE Alu -20 292 1 259 326 63 0 chr9 132318355 132318450 -9952994 - MIR SINE MIR -68 194 94 304 361 84 0 chr9 132318477 132318632 -9952812 + MIR SINE MIR 40 207 -55 192 176 0 0 chr9 132319250 132319284 -9952160 - L2 LINE L2 -1 3271 3238 257 284 224 16 chr9 132319437 132319579 -9951865 - L2 LINE L2 -72 3241 3051 2212 101 3 7 chr9 132319579 132319887 -9951557 + AluSx SINE Alu 1 307 -5 257 284 224 16 chr9 132319887 132319927 -9951517 - L2 LINE L2 -262 3051 3021 2079 119 0 13 chr9 132319986 132320311 -9951133 + AluSq SINE Alu 1 313 0 335 269 135 21 chr9 132320747 132320888 -9950556 - MIR SINE MIR -69 193 37 1912 131 41 0 chr9 132320900 132321190 -9950254 - AluSx SINE Alu -10 302 1 313 321 31 23 chr9 132321357 132321491 -9949953 + MER5A DNA MER1_type 1 145 -44 2297 90 7 0 chr9 132322459 132322760 -9948684 - AluSp SINE Alu -10 303 1 21 0 0 0 chr9 132323262 132323283 -9948161 + AT_rich Low_complexity Low_complexity 1 21 0 830 161 0 0 chr9 132323285 132323409 -9948035 - FLAM_C SINE Alu -9 124 1 309 365 93 18 chr9 132323609 132323943 -9947501 - L2 LINE L2 0 3272 2914 328 220 64 46 chr9 132324663 132324772 -9946672 - L2 LINE L2 -1 3271 3161 1267 180 150 26 chr9 132324872 132325139 -9946305 - AluJo SINE Alu -1 301 2 226 158 0 35 chr9 132325603 132325660 -9945784 + GA-rich Low_complexity Low_complexity 3 57 0 2232 78 3 7 chr9 132325817 132326112 -9945332 - AluSg SINE Alu -16 294 1 2235 104 0 0 chr9 132326127 132326435 -9945009 - AluSx SINE Alu 0 312 5 377 337 26 24 chr9 132327006 132327214 -9944230 - MIR SINE MIR -35 227 19 740 190 0 0 chr9 132327285 132327422 -9944022 - MIR SINE MIR -102 160 24 942 153 13 0 chr9 132327554 132327711 -9943733 - AluJb SINE Alu -20 292 134 2139 116 0 0 chr9 132327711 132328004 -9943440 - AluSg SINE Alu -17 293 1 223 327 99 0 chr9 132328316 132328417 -9943027 - L2 LINE L2 -9 3263 3153 1552 121 3 118 chr9 132328463 132328793 -9942651 - AluSp SINE Alu -11 292 1 208 184 0 41 chr9 132328858 132328907 -9942537 - L2 LINE L2 -92 3180 3134 206 318 15 0 chr9 132329509 132329575 -9941869 + L2 LINE L2 3205 3271 -1 734 146 23 23 chr9 132329906 132330077 -9941367 - MER53 DNA DNA -1 188 18 1220 179 80 5 chr9 132330105 132330329 -9941115 - AluSp SINE Alu -72 241 1 294 316 0 0 chr9 132331171 132331250 -9940194 - MIR SINE MIR -77 185 107 521 303 49 0 chr9 132331515 132331657 -9939787 - MER5B DNA MER1_type 0 178 30 1068 183 3 6 chr9 132331919 132332281 -9939163 + (TCCA)n Simple_repeat Simple_repeat 1 360 0 228 255 0 0 chr9 132332283 132332330 -9939114 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 893 162 0 6 chr9 132332330 132332509 -9938935 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 1017 140 0 0 chr9 132332529 132332707 -9938737 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 383 333 62 0 chr9 132332733 132332877 -9938567 - L2 LINE L2 -5 3267 3115 213 382 15 0 chr9 132332985 132333053 -9938391 + L2 LINE L2 2974 3042 -271 199 379 21 0 chr9 132333331 132333426 -9938018 - MIR SINE MIR -50 212 116 545 282 64 67 chr9 132333658 132333956 -9937488 + MLT1I LTR MaLR 113 409 0 302 316 85 14 chr9 132334949 132335161 -9936283 - LTR16C LTR ERVL 0 491 265 233 228 51 89 chr9 132335398 132335477 -9935967 - MIR3 SINE MIR -47 161 86 451 345 31 16 chr9 132335940 132336131 -9935313 - MIR SINE MIR -37 225 32 225 94 0 0 chr9 132336768 132336800 -9934644 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 316 291 0 0 chr9 132337384 132337463 -9933981 - L2 LINE L2 -1 3271 3193 782 316 46 74 chr9 132337719 132337766 -9933678 - L1MEd LINE L1 -5122 997 950 2026 119 0 29 chr9 132337766 132338076 -9933368 - AluSx SINE Alu -11 301 1 782 316 46 74 chr9 132338076 132338490 -9932954 - L1MEd LINE L1 -5169 950 561 705 368 61 44 chr9 132338503 132339486 -9931958 + L1MCa LINE L1 1936 5383 -1043 333 188 12 59 chr9 132339416 132339501 -9931943 - L1MCa LINE L1 -4363 2063 1983 * 1818 133 54 4 chr9 132339515 132339794 -9931650 - AluJb SINE Alu -19 293 1 433 329 51 63 chr9 132340086 132340512 -9930932 + L2 LINE L2 2680 3098 -174 200 343 0 67 chr9 132340971 132341076 -9930368 + MIR SINE MIR 80 177 -85 313 194 16 0 chr9 132341703 132341765 -9929679 - MIR SINE MIR -64 144 82 345 353 113 20 chr9 132341919 132342372 -9929072 - L2 LINE L2 -523 2791 2297 377 243 117 0 chr9 132342953 132343064 -9928380 + L2 LINE L2 3181 3304 -9 2005 128 16 3 chr9 132343072 132343377 -9928067 - AluSx SINE Alu -3 309 1 294 342 9 26 chr9 132343470 132343584 -9927860 + MIR SINE MIR 132 243 -19 2244 106 0 0 chr9 132343819 132344120 -9927324 - AluSx SINE Alu -11 301 1 864 145 0 36 chr9 132344343 132344481 -9926963 - FLAM_C SINE Alu 0 133 1 242 306 134 13 chr9 132344485 132344642 -9926802 - L1ME LINE L1 -345 5776 5601 2067 81 60 0 chr9 132345397 132345680 -9925764 - AluSq SINE Alu -13 300 1 229 318 147 45 chr9 132345735 132345933 -9925511 + MIR SINE MIR 45 262 0 2091 111 0 7 chr9 132346004 132346302 -9925142 + AluSg SINE Alu 1 296 -14 1889 113 68 0 chr9 132346324 132346617 -9924827 - AluSp SINE Alu 0 313 1 244 295 86 60 chr9 132347910 132348144 -9923300 + L1ME LINE L1 5659 5898 -223 448 205 34 51 chr9 132348204 132348321 -9923123 - MIR SINE MIR -102 160 46 359 267 137 20 chr9 132348346 132348391 -9923053 + HAL1b LINE L1 1186 1224 -124 2337 93 0 0 chr9 132348391 132348691 -9922753 + AluSp SINE Alu 1 300 -13 359 267 137 20 chr9 132348691 132348791 -9922653 + HAL1b LINE L1 1224 1348 0 386 273 55 0 chr9 132349463 132349591 -9921853 + L1MC/D LINE L1 5687 5821 -1987 2459 74 0 0 chr9 132349595 132349906 -9921538 - AluY SINE Alu 0 311 1 1301 194 49 0 chr9 132349927 132350174 -9921270 + AluJo SINE Alu 1 259 -53 252 299 17 51 chr9 132350284 132350401 -9921043 - MER5A DNA MER1_type -50 139 27 1806 137 53 0 chr9 132350546 132350830 -9920614 - AluSx SINE Alu -13 299 1 932 221 119 55 chr9 132350831 132351283 -9920161 - L1ME3 LINE L1 -16 6146 5666 208 327 0 0 chr9 132351333 132351388 -9920056 + MIR SINE MIR 148 202 -60 729 177 9 0 chr9 132352323 132352436 -9919008 + FLAM_C SINE Alu 4 117 -26 1679 161 3 41 chr9 132352457 132352641 -9918803 - AluJb SINE Alu -2 310 141 1808 105 61 51 chr9 132352641 132352935 -9918509 - AluSx SINE Alu -15 297 1 1679 161 3 41 chr9 132352935 132353066 -9918378 - AluJb SINE Alu -171 141 7 944 264 67 78 chr9 132353784 132354366 -9917078 + L2 LINE L2 2688 3271 -1 2074 139 10 0 chr9 132354432 132354741 -9916703 - AluJb SINE Alu 0 312 1 2348 78 0 0 chr9 132355250 132355544 -9915900 + AluSg SINE Alu 1 294 -16 600 237 47 6 chr9 132355561 132355730 -9915714 - MIR SINE MIR -8 254 79 192 324 78 42 chr9 132355783 132355925 -9915519 + MER5B DNA MER1_type 15 161 -17 231 311 109 0 chr9 132355798 132355917 -9915527 - MER5A DNA MER1_type -21 168 37 302 354 81 6 chr9 132355934 132356095 -9915349 - MIR3 SINE MIR -13 195 23 2256 68 0 0 chr9 132356095 132356402 -9915042 - AluY SINE Alu 0 309 3 437 337 57 11 chr9 132357410 132357585 -9913859 - MIR SINE MIR -32 230 48 433 316 48 18 chr9 132358437 132358605 -9912839 + MER5A DNA MER1_type 17 189 0 212 326 35 43 chr9 132359908 132360049 -9911395 + MIR3 SINE MIR 1 140 -68 243 179 0 18 chr9 132360918 132360974 -9910470 + G-rich Low_complexity Low_complexity 3 57 0 240 167 0 0 chr9 132362460 132362508 -9908936 + (TG)n Simple_repeat Simple_repeat 1 48 0 2453 47 7 3 chr9 132364594 132364895 -9906549 + AluY SINE Alu 1 302 -9 2007 117 0 0 chr9 132364908 132365181 -9906263 + AluSx SINE Alu 21 293 -19 2157 120 7 0 chr9 132365186 132365486 -9905958 + AluSx SINE Alu 1 302 -10 191 61 30 0 chr9 132368117 132368150 -9903294 + (GGGTG)n Simple_repeat Simple_repeat 5 38 0 390 283 157 18 chr9 132369210 132369376 -9902068 + MIR SINE MIR 47 235 -27 297 157 100 0 chr9 132369772 132369842 -9901602 + MIR SINE MIR 109 185 -77 266 301 191 4 chr9 132370160 132370406 -9901038 - L2 LINE L2 -654 2660 2369 459 209 43 35 chr9 132371974 132372089 -9899355 + L2 LINE L2 3172 3287 -26 190 324 122 43 chr9 132372548 132372826 -9898618 + L2 LINE L2 2812 3111 -161 203 283 196 11 chr9 132373018 132373110 -9898334 + L2 LINE L2 3202 3310 -3 302 260 58 0 chr9 132373519 132373623 -9897821 - L2 LINE L2 -1 3271 3162 2253 82 10 3 chr9 132374002 132374305 -9897139 + AluSg SINE Alu 1 305 -5 353 236 79 24 chr9 132375554 132375681 -9895763 + MIR SINE MIR 45 178 -84 2195 119 3 3 chr9 132375845 132376157 -9895287 - AluSx SINE Alu 0 312 1 249 333 81 0 chr9 132376200 132376299 -9895145 - L2 LINE L2 -4 3268 3162 228 111 0 0 chr9 132376880 132376916 -9894528 + (TCC)n Simple_repeat Simple_repeat 3 38 0 2030 126 3 0 chr9 132377386 132377679 -9893765 - AluSx SINE Alu -18 294 1 1422 162 35 70 chr9 132377685 132378000 -9893444 - AluJb SINE Alu -6 306 3 623 318 109 47 chr9 132378004 132378387 -9893057 + L2 LINE L2 2454 2812 -501 2465 56 0 3 chr9 132378387 132378689 -9892755 - AluY SINE Alu -10 301 1 623 318 109 47 chr9 132378689 132378842 -9892602 + L2 LINE L2 2812 2954 -359 2485 72 0 0 chr9 132378842 132379148 -9892296 - AluY SINE Alu -5 306 1 623 318 109 47 chr9 132379148 132379400 -9892044 + L2 LINE L2 2954 3304 -9 240 35 0 0 chr9 132379402 132379431 -9892013 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 187 304 0 0 chr9 132379433 132379479 -9891965 + L3 LINE CR1 1430 1475 -102 2055 137 0 3 chr9 132379778 132380091 -9891353 + AluSx SINE Alu 1 312 0 2187 118 0 10 chr9 132380275 132380579 -9890865 - AluSx SINE Alu -11 301 1 702 303 146 6 chr9 132380584 132381030 -9890414 - L2 LINE L2 -25 3288 2765 293 243 15 22 chr9 132381046 132381182 -9890262 + CT-rich Low_complexity Low_complexity 2 136 0 2105 142 3 0 chr9 132381183 132381494 -9889950 - AluJb SINE Alu 0 312 1 648 230 132 0 chr9 132381521 132381695 -9889749 - MER63A DNA MER1_type 0 210 14 644 307 143 47 chr9 132381696 132381912 -9889532 - L2 LINE L2 -564 2750 2556 2097 102 16 7 chr9 132381912 132382215 -9889229 - AluSx SINE Alu -6 306 1 644 307 143 47 chr9 132382215 132382613 -9888831 - L2 LINE L2 -758 2556 2077 607 262 57 18 chr9 132382774 132383003 -9888441 + MLT1K LTR MaLR 109 346 -242 * 1246 167 49 89 chr9 132383002 132383253 -9888191 - MER45B DNA AcHobo -541 1040 804 1869 126 25 7 chr9 132383253 132383560 -9887884 - AluSx SINE Alu 0 312 1 1246 167 49 89 chr9 132383560 132383654 -9887790 - MER45B DNA AcHobo -777 804 708 1394 254 184 26 chr9 132383842 132384412 -9887032 - MER45C DNA AcHobo -265 688 29 479 234 18 58 chr9 132384443 132384614 -9886830 + MLT1K LTR MaLR 392 555 -33 390 106 12 24 chr9 132384920 132385005 -9886439 + (TG)n Simple_repeat Simple_repeat 2 85 0 2264 110 0 0 chr9 132385079 132385379 -9886065 + AluSx SINE Alu 1 300 -12 318 98 0 0 chr9 132385520 132385571 -9885873 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 1979 137 0 13 chr9 132385791 132385953 -9885491 - AluJb SINE Alu -17 295 137 1825 115 0 4 chr9 132385953 132386214 -9885230 - AluSg SINE Alu -16 294 35 1979 137 0 13 chr9 132386214 132386350 -9885094 - AluJb SINE Alu -175 137 1 330 295 218 19 chr9 132386458 132386614 -9884830 - MIR SINE MIR -12 250 64 2050 74 64 24 chr9 132386615 132386911 -9884533 + AluSp SINE Alu 1 308 -5 288 263 154 35 chr9 132387436 132387595 -9883849 - MIR3 SINE MIR -22 186 10 2011 119 13 6 chr9 132387733 132388044 -9883400 - AluSq SINE Alu 0 313 1 438 301 39 20 chr9 132388116 132388319 -9883125 + MLT1J2 LTR MaLR 1 207 -243 236 263 38 12 chr9 132388479 132388559 -9882885 + MLT1I LTR MaLR 324 405 -4 853 201 92 86 chr9 132388568 132388653 -9882791 + L2 LINE L2 3008 3091 -222 1806 125 24 27 chr9 132388653 132388949 -9882495 - AluSx SINE Alu -6 306 12 853 201 92 86 chr9 132388949 132389167 -9882277 + L2 LINE L2 3091 3313 0 1960 122 21 0 chr9 132389176 132389462 -9881982 - AluJb SINE Alu -20 292 1 2099 89 34 3 chr9 132389623 132389916 -9881528 + AluSq SINE Alu 6 307 -6 216 0 0 0 chr9 132389916 132389940 -9881504 + (TA)n Simple_repeat Simple_repeat 2 25 0 2331 95 0 3 chr9 132389984 132390290 -9881154 - AluSg SINE Alu -5 305 1 428 296 81 16 chr9 132390368 132390554 -9880890 - MIR3 SINE MIR -8 200 3 426 253 47 0 chr9 132390982 132391132 -9880312 - L1ME4a LINE L1 0 6121 5965 2191 115 3 0 chr9 132391793 132392098 -9879346 - AluSx SINE Alu -2 310 5 322 296 136 50 chr9 132392117 132392418 -9879026 + MLT1K LTR MaLR 252 578 -10 386 241 222 0 chr9 132392697 132392805 -9878639 + MIR SINE MIR 69 200 -62 217 311 33 11 chr9 132392831 132392921 -9878523 + L2 LINE L2 3221 3312 -1 180 0 0 0 chr9 132392990 132393010 -9878434 + (CA)n Simple_repeat Simple_repeat 1 20 0 277 227 0 15 chr9 132395086 132395152 -9876292 + GA-rich Low_complexity Low_complexity 1 65 0 201 182 0 0 chr9 132395205 132395238 -9876206 + A-rich Low_complexity Low_complexity 1 33 0 207 196 0 36 chr9 132396265 132396321 -9875123 + G-rich Low_complexity Low_complexity 1 54 0 29 70 0 0 chr9 132396592 132396649 -9874795 + GC_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr9 132396810 132396838 -9874606 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr9 132397204 132397243 -9874201 + GC_rich Low_complexity Low_complexity 1 39 0 244 174 0 65 chr9 132397494 132397586 -9873858 + G-rich Low_complexity Low_complexity 1 86 0 189 107 0 0 chr9 132397619 132397647 -9873797 + (CGG)n Simple_repeat Simple_repeat 2 29 0 37 62 0 0 chr9 132397737 132397802 -9873642 + GC_rich Low_complexity Low_complexity 1 65 0 223 239 0 0 chr9 132397802 132397873 -9873571 + (CTG)n Simple_repeat Simple_repeat 1 71 0 204 40 0 0 chr9 132397995 132398020 -9873424 + (CTG)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr9 132398266 132398290 -9873154 + GC_rich Low_complexity Low_complexity 1 24 0 226 310 23 11 chr9 132399328 132399415 -9872029 - MIR SINE MIR -68 140 53 283 188 47 16 chr9 132400047 132400111 -9871333 - MIR SINE MIR -62 146 81 2387 73 0 3 chr9 132400387 132400690 -9870754 + AluY SINE Alu 1 302 -9 291 333 11 11 chr9 132400909 132400996 -9870448 - MIR SINE MIR -146 116 30 357 337 39 22 chr9 132402638 132402816 -9868628 - MIR3 SINE MIR -25 183 3 472 282 128 0 chr9 132403200 132403356 -9868088 - MIR SINE MIR -14 248 73 297 75 0 0 chr9 132403538 132403578 -9867866 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 227 150 0 0 chr9 132403726 132403766 -9867678 + MER117 DNA MER1_type 114 153 -44 311 272 73 59 chr9 132403842 132403978 -9867466 + MIR3 SINE MIR 7 144 -64 552 188 0 0 chr9 132404129 132404262 -9867182 + (TG)n Simple_repeat Simple_repeat 1 133 0 253 350 84 21 chr9 132404486 132404629 -9866815 - MIR SINE MIR -28 234 83 12291 40 4 1 chr9 132405249 132407665 -9863779 - L1PA4 LINE L1 -20 6135 3711 1879 137 0 34 chr9 132407766 132408087 -9863357 - AluJb SINE Alu -2 310 1 330 257 68 68 chr9 132409032 132409180 -9862264 - MIR SINE MIR -91 171 24 285 51 0 0 chr9 132409695 132409734 -9861710 + (CA)n Simple_repeat Simple_repeat 1 39 0 287 267 102 67 chr9 132409903 132410074 -9861370 - L1MC5 LINE L1 -384 7577 7395 2053 125 7 23 chr9 132410074 132410379 -9861065 - AluSx SINE Alu -12 300 1 287 267 102 67 chr9 132410379 132410432 -9861012 - L1MC5 LINE L1 -566 7395 7345 1401 148 41 29 chr9 132410489 132410651 -9860793 - AluJb SINE Alu -17 295 128 216 0 0 0 chr9 132410651 132410675 -9860769 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1401 148 41 29 chr9 132410675 132410756 -9860688 - AluJb SINE Alu -184 128 49 5233 172 44 42 chr9 132410757 132411213 -9860231 - L1MB7 LINE L1 -45 6139 5685 2060 117 33 0 chr9 132411213 132411513 -9859931 + AluSq SINE Alu 1 310 -3 5233 172 44 42 chr9 132411513 132412158 -9859286 - L1MB7 LINE L1 -499 5685 5043 2095 113 0 0 chr9 132412158 132412440 -9859004 - AluSx SINE Alu -30 282 1 5233 172 44 42 chr9 132412440 132413012 -9858432 - L1MB7 LINE L1 -1141 5043 4473 1939 155 7 0 chr9 132413012 132413316 -9858128 - AluJo SINE Alu -4 308 3 5233 172 44 42 chr9 132413316 132413536 -9857908 - L1MB7 LINE L1 -1711 4473 4255 222 37 0 0 chr9 132413536 132413563 -9857881 + (TG)n Simple_repeat Simple_repeat 2 28 0 5233 172 44 42 chr9 132413563 132413810 -9857634 - L1MB7 LINE L1 -1929 4255 4004 2598 76 8 91 chr9 132413836 132414233 -9857211 - THE1B LTR MaLR 0 364 1 523 360 33 12 chr9 132414660 132414902 -9856542 + MIR SINE MIR 16 262 0 673 314 27 0 chr9 132415099 132415287 -9856157 - MIR SINE MIR -35 227 35 727 153 0 0 chr9 132415513 132415631 -9855813 + FLAM_C SINE Alu 1 118 -15 36 0 0 0 chr9 132415631 132415667 -9855777 + AT_rich Low_complexity Low_complexity 1 36 0 235 376 113 9 chr9 132415759 132415980 -9855464 - L3 LINE CR1 -632 945 702 1853 122 75 20 chr9 132416430 132416724 -9854720 + AluSg SINE Alu 1 310 0 551 327 113 30 chr9 132416734 132417193 -9854251 - L2 LINE L2 -12 3301 2805 369 161 129 11 chr9 132417545 132417638 -9853806 + MIR SINE MIR 41 144 -64 1395 113 10 20 chr9 132417695 132417943 -9853501 - AluSp SINE Alu 0 313 87 2245 107 0 0 chr9 132417960 132418250 -9853194 + AluSx SINE Alu 2 291 -21 774 143 24 8 chr9 132418250 132418376 -9853068 - AluJo/FLAM SINE Alu -173 129 2 361 253 11 0 chr9 132419601 132419779 -9851665 + (CCCCAA)n Simple_repeat Simple_repeat 1 180 0 252 143 0 0 chr9 132419803 132419845 -9851599 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 1910 156 7 19 chr9 132419845 132420153 -9851291 - AluJo SINE Alu -8 304 1 659 293 78 32 chr9 132420475 132420823 -9850621 + L2 LINE L2 2920 3283 -30 267 31 0 0 chr9 132420837 132420869 -9850575 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 217 200 154 0 chr9 132421544 132421609 -9849835 - MIR SINE MIR -117 145 71 1947 165 64 50 chr9 132422645 132423142 -9848302 - MLT1D LTR MaLR 0 505 2 303 326 59 36 chr9 132423582 132423803 -9847641 + L2 LINE L2 3027 3252 -20 398 219 26 35 chr9 132423991 132424105 -9847339 - MIR SINE MIR -33 229 117 2439 88 0 10 chr9 132424254 132424561 -9846883 - AluSc SINE Alu -5 304 1 817 184 6 6 chr9 132424702 132424881 -9846563 + L1MB3 LINE L1 6005 6183 0 234 265 72 12 chr9 132425176 132425259 -9846185 + MIR SINE MIR 80 167 -95 328 337 39 0 chr9 132425368 132425546 -9845898 + MIR3 SINE MIR 15 199 -9 2477 95 0 0 chr9 132425894 132426200 -9845244 - AluSq SINE Alu -7 306 1 336 324 68 11 chr9 132426644 132426752 -9844692 - MIR SINE MIR -20 242 142 1811 144 113 66 chr9 132426752 132427161 -9844283 - MSTA LTR MaLR 0 428 1 336 324 68 11 chr9 132427161 132427211 -9844233 - MIR SINE MIR -120 142 71 2653 169 2 36 chr9 132427211 132427443 -9844001 - MER66B LTR ERV1 0 486 248 2108 121 0 3 chr9 132427443 132427754 -9843690 - AluSx SINE Alu 0 310 1 2653 169 2 36 chr9 132427754 132428023 -9843421 - MER66B LTR ERV1 -238 248 1 336 324 68 11 chr9 132428023 132428039 -9843405 - MIR SINE MIR -191 71 57 2091 124 0 0 chr9 132428367 132428670 -9842774 - AluSx SINE Alu 0 303 1 574 281 51 47 chr9 132428747 132429003 -9842441 - L2 LINE L2 -2 3311 3055 1433 137 0 19 chr9 132429066 132429277 -9842167 - AluSx SINE Alu -105 207 1 875 185 19 0 chr9 132429352 132429514 -9841930 - FAM SINE Alu -10 165 1 1769 176 12 6 chr9 132429520 132429860 -9841584 - L1MB3 LINE L1 -45 6138 5797 628 294 81 17 chr9 132429906 132430250 -9841194 - L2 LINE L2 -1166 2148 1783 987 184 6 0 chr9 132430259 132430422 -9841022 - FRAM SINE Alu -20 156 1 536 317 126 2 chr9 132430422 132430873 -9840571 - L2 LINE L2 -1531 1783 1277 294 281 33 25 chr9 132430902 132431023 -9840421 - MIR SINE MIR -19 243 122 1695 174 30 9 chr9 132431039 132431350 -9840094 + MLT1A1 LTR MaLR 1 321 -44 1623 142 75 32 chr9 132431350 132431632 -9839812 - AluJb SINE Alu -18 294 1 1695 174 30 9 chr9 132431632 132431653 -9839791 + MLT1A1 LTR MaLR 321 340 -25 243 170 19 19 chr9 132431728 132431781 -9839663 + MLT1A1 LTR MaLR 308 360 -5 1438 157 0 18 chr9 132431967 132432059 -9839385 - AluSq SINE Alu -88 225 133 2364 97 3 3 chr9 132432059 132432367 -9839077 - AluSp SINE Alu -5 308 1 1438 157 0 18 chr9 132432367 132432503 -9838941 - AluSq SINE Alu -180 133 1 326 285 118 0 chr9 132432503 132432647 -9838797 - L1ME4a LINE L1 -272 5849 5689 2234 127 0 0 chr9 132432780 132433079 -9838365 + AluSx SINE Alu 1 299 -13 1357 206 186 8 chr9 132433552 132433940 -9837504 - MLT1C LTR MaLR -8 459 3 2320 106 3 0 chr9 132434507 132434808 -9836636 - AluSx SINE Alu -10 302 1 308 340 167 18 chr9 132434842 132435183 -9836261 + L2 LINE L2 2830 3221 -51 2555 180 10 26 chr9 132435189 132435683 -9835761 + MER66B LTR ERV1 1 486 0 276 242 16 0 chr9 132436162 132436224 -9835220 + L2 LINE L2 3209 3271 -1 297 244 58 0 chr9 132436227 132436313 -9835131 + MIR SINE MIR 40 130 -132 3548 165 44 1 chr9 132436527 132437187 -9834257 + L1MB3 LINE L1 5462 6149 -34 1732 121 0 15 chr9 132437289 132437553 -9833891 + AluY SINE Alu 40 299 -12 1426 105 0 43 chr9 132437553 132437763 -9833681 + AluSg/x SINE Alu 106 306 -4 396 281 74 0 chr9 132437875 132438010 -9833434 + L2 LINE L2 2671 2815 -499 2589 74 0 0 chr9 132439010 132439321 -9832123 + AluSx SINE Alu 1 311 -1 902 188 0 0 chr9 132439626 132439770 -9831674 + FRAM SINE Alu 2 145 -31 186 43 0 0 chr9 132439773 132439796 -9831648 + (TAA)n Simple_repeat Simple_repeat 2 24 0 391 333 71 11 chr9 132439824 132440007 -9831437 - MIR SINE MIR -30 232 39 718 213 9 37 chr9 132441686 132441902 -9829542 - MER113 DNA MER1_type? -248 273 64 230 308 33 0 chr9 132443089 132443180 -9828264 - MER5A DNA MER1_type -91 98 5 550 221 39 7 chr9 132443357 132443511 -9827933 - MER5A DNA MER1_type -28 161 3 403 277 6 14 chr9 132443707 132443864 -9827580 - MIR SINE MIR -60 148 26 2378 88 0 13 chr9 132445432 132445739 -9825705 - AluSq SINE Alu -6 307 5 304 197 15 0 chr9 132445745 132445811 -9825633 - MIR SINE MIR -115 147 81 195 138 0 0 chr9 132446295 132446324 -9825120 - L2 LINE L2 -18 3295 3267 217 151 57 19 chr9 132446712 132446765 -9824679 + L2 LINE L2 3009 3063 -250 1662 154 15 4 chr9 132446892 132447164 -9824280 + AluSx SINE Alu 1 275 -37 234 331 20 7 chr9 132447240 132447391 -9824053 + MER53 DNA DNA 33 185 -4 366 261 39 59 chr9 132448193 132448346 -9823098 + MIR SINE MIR 3 152 -56 450 0 0 0 chr9 132448598 132448648 -9822796 + (TG)n Simple_repeat Simple_repeat 1 50 0 1899 162 0 19 chr9 132449934 132450242 -9821202 + AluJb SINE Alu 1 302 -10 387 156 52 0 chr9 132450246 132450342 -9821102 + GA-rich Low_complexity Low_complexity 4 104 0 417 264 8 16 chr9 132450821 132450950 -9820494 + L2 LINE L2 3185 3312 -1 250 196 0 0 chr9 132451349 132451400 -9820044 - L1 LINE L1 -3851 2295 2245 1708 124 60 0 chr9 132451403 132451652 -9819792 + AluSx SINE Alu 11 274 -38 345 185 15 9 chr9 132451755 132451838 -9819606 - AluS SINE Alu -237 65 1 844 171 0 29 chr9 132451900 132452040 -9819404 - AluJo SINE Alu -176 136 1 1169 137 0 0 chr9 132452063 132452224 -9819220 + AluSg/x SINE Alu 132 292 -18 556 190 49 7 chr9 132452224 132452366 -9819078 - L1MD2 LINE L1 -17 6342 6195 661 319 70 0 chr9 132452367 132452608 -9818836 - L1MD2 LINE L1 -217 6142 5885 1226 137 0 6 chr9 132452608 132452791 -9818653 - AluJo SINE Alu -11 301 120 804 161 0 0 chr9 132452822 132452952 -9818492 - AluJo SINE Alu -171 131 2 618 218 222 13 chr9 132452957 132453017 -9818427 - L1ME1 LINE L1 -281 6279 6233 1887 107 0 23 chr9 132453017 132453279 -9818165 - AluSc SINE Alu -15 294 39 618 218 222 13 chr9 132453279 132453452 -9817992 - L1ME1 LINE L1 -327 6233 5997 2156 127 7 0 chr9 132453452 132453743 -9817701 - AluSq SINE Alu -20 293 1 4041 243 60 41 chr9 132453755 132454171 -9817273 - L1ME1 LINE L1 -1953 4587 4181 1839 175 3 3 chr9 132454171 132454463 -9816981 - AluJb SINE Alu -16 296 5 4041 243 60 41 chr9 132454463 132455367 -9816077 - L1ME1 LINE L1 -2359 4181 3296 11361 77 1 1 chr9 132455367 132457710 -9813734 - L1PA7 LINE L1 -1 6153 3809 4041 243 60 41 chr9 132457710 132458546 -9812898 - L1ME1 LINE L1 -3244 3296 2478 1612 195 20 10 chr9 132458546 132458843 -9812601 - AluJo SINE Alu -12 300 1 4041 243 60 41 chr9 132458843 132459605 -9811839 - L1ME1 LINE L1 -4062 2478 1517 686 134 0 8 chr9 132459610 132459729 -9811715 + (TTCC)n Simple_repeat Simple_repeat 2 119 0 1967 122 30 34 chr9 132459739 132460035 -9811409 - AluSg SINE Alu -15 295 1 3476 244 102 21 chr9 132460035 132460844 -9810600 - L1ME1 LINE L1 -5459 1081 178 2238 58 0 0 chr9 132460844 132461137 -9810307 + L1PA4 LINE L1 5859 6151 -4 3476 244 102 21 chr9 132461137 132461311 -9810133 - L1ME1 LINE L1 -6362 178 19 518 247 181 30 chr9 132461307 132461611 -9809833 - L1MDa LINE L1 -4660 1880 1531 * 3798 239 82 50 chr9 132461608 132462067 -9809377 + L1ME2 LINE L1 3474 3917 -2247 252 0 0 0 chr9 132462067 132462095 -9809349 + (CA)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr9 132462094 132462115 -9809329 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 3798 239 82 50 chr9 132462095 132462164 -9809280 + L1ME2 LINE L1 3917 3982 -2182 2146 131 0 3 chr9 132462164 132462489 -9808955 + AluSx SINE Alu 1 312 0 3798 239 82 50 chr9 132462489 132463077 -9808367 + L1ME2 LINE L1 3982 4550 -1614 2552 75 3 0 chr9 132463077 132463383 -9808061 + AluSp SINE Alu 1 307 -6 3798 239 82 50 chr9 132463383 132463855 -9807589 + L1ME2 LINE L1 4550 5005 -1159 2160 119 0 14 chr9 132463855 132464150 -9807294 + AluSg SINE Alu 1 291 -19 3798 239 82 50 chr9 132464150 132464450 -9806994 + L1ME2 LINE L1 5005 5294 -870 1904 151 8 51 chr9 132464450 132464802 -9806642 - MER1B DNA MER1_type 0 337 1 3798 239 82 50 chr9 132464802 132465533 -9805911 + L1ME2 LINE L1 5294 6154 -10 1745 162 18 0 chr9 132465951 132466231 -9805213 + AluJo SINE Alu 21 303 -9 2835 184 35 0 chr9 132466381 132466864 -9804580 + MLT1D LTR MaLR 2 501 -4 1762 150 0 17 chr9 132467163 132467450 -9803994 + AluJo SINE Alu 1 282 -30 213 252 14 133 chr9 132467478 132467621 -9803823 - MIR3 SINE MIR -41 167 42 2155 122 3 10 chr9 132467646 132467958 -9803486 + AluSx SINE Alu 1 310 -2 730 298 77 0 chr9 132468384 132468619 -9802825 - MLT1J LTR MaLR -150 361 109 1982 97 0 57 chr9 132468619 132468940 -9802504 - AluSg SINE Alu 0 304 1 859 127 8 22 chr9 132468964 132469098 -9802346 - FLAM_C SINE Alu 0 133 2 573 286 111 57 chr9 132469192 132469600 -9801844 + L2 LINE L2 2726 3172 -100 2028 112 14 10 chr9 132469600 132469895 -9801549 + AluSq SINE Alu 1 296 -17 573 286 111 57 chr9 132469895 132470001 -9801443 + L2 LINE L2 3172 3271 -1 995 169 56 15 chr9 132470182 132470377 -9801067 - MLT1F1 LTR MaLR -8 559 357 183 80 0 0 chr9 132470562 132470587 -9800857 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2153 115 3 0 chr9 132470587 132470891 -9800553 + AluSp SINE Alu 1 305 -8 363 250 23 23 chr9 132471624 132471712 -9799732 + MIR SINE MIR 87 174 -88 300 53 0 0 chr9 132471979 132472017 -9799427 + (GA)n Simple_repeat Simple_repeat 1 38 0 652 251 9 62 chr9 132472173 132472384 -9799060 + MIR SINE MIR 62 261 -1 1116 158 50 45 chr9 132472396 132472618 -9798826 + AluJo SINE Alu 77 299 -13 1130 229 42 106 chr9 132473564 132473825 -9797619 - MLT2C1 LTR ERVL 0 397 121 2322 90 0 3 chr9 132473825 132474136 -9797308 - AluY SINE Alu -1 310 1 1130 229 42 106 chr9 132474136 132474175 -9797269 - MLT2C1 LTR ERVL -276 121 81 2061 114 17 0 chr9 132474175 132474464 -9796980 - AluSx SINE Alu -18 294 1 1130 229 42 106 chr9 132474464 132474586 -9796858 - MLT2C1 LTR ERVL -316 81 1 2429 141 38 31 chr9 132475286 132475711 -9795733 - MSTC LTR MaLR 0 428 1 333 290 0 16 chr9 132475862 132475986 -9795458 + LTR67 LTR ERVL 433 554 -3 356 211 56 11 chr9 132475987 132476077 -9795367 + MIR SINE MIR 45 138 -70 1305 160 0 35 chr9 132476443 132476674 -9794770 - AluJb SINE Alu -5 307 85 1099 235 55 47 chr9 132476861 132477244 -9794200 + MLT1J2 LTR MaLR 1 386 -64 316 301 142 0 chr9 132478169 132478282 -9793162 - MIR SINE MIR -25 237 109 242 233 318 0 chr9 132478818 132478907 -9792537 + MIR SINE MIR 54 170 -57 310 356 76 0 chr9 132479004 132479136 -9792308 - MIR SINE MIR -118 144 3 231 190 35 0 chr9 132479785 132479843 -9791601 + (TCTCTG)n Simple_repeat Simple_repeat 3 62 0 200 162 27 0 chr9 132480918 132480955 -9790489 + MIR SINE MIR 30 67 -141 422 286 216 7 chr9 132481091 132481364 -9790080 + L2 LINE L2 2890 3219 -53 618 303 28 5 chr9 132481865 132482076 -9789368 - MIR SINE MIR -25 237 22 329 379 23 0 chr9 132482523 132482655 -9788789 + L2 LINE L2 3175 3309 -4 256 240 156 21 chr9 132482652 132482748 -9788696 - MIR SINE MIR -65 143 35 * 366 254 88 44 chr9 132483164 132483278 -9788166 + MIR SINE MIR 38 156 -52 2176 109 13 0 chr9 132483844 132484146 -9787298 + AluSp SINE Alu 2 307 -6 249 306 62 50 chr9 132484285 132484445 -9786999 - MIR SINE MIR -68 194 33 196 383 56 0 chr9 132484533 132484640 -9786804 - L2 LINE L2 -41 3231 3119 2124 98 3 3 chr9 132484743 132485030 -9786414 + AluSq SINE Alu 1 287 -26 1887 159 3 0 chr9 132485248 132485543 -9785901 + AluJb SINE Alu 14 309 -3 2335 97 0 7 chr9 132486213 132486521 -9784923 + AluSg SINE Alu 1 306 -4 2160 121 0 0 chr9 132486521 132486825 -9784619 + AluSq SINE Alu 1 305 -8 219 248 80 24 chr9 132487331 132487438 -9784006 + MIR SINE MIR 16 129 -79 2089 66 0 63 chr9 132488489 132488822 -9782622 + AluSg SINE Alu 1 314 0 1969 136 0 0 chr9 132488952 132489260 -9782184 - AluSx SINE Alu 0 308 1 1157 165 40 139 chr9 132489286 132489632 -9781812 - AluJo SINE Alu 0 312 1 2158 200 123 14 chr9 132489982 132490468 -9780976 - MLT1F LTR MaLR 0 542 4 437 296 107 0 chr9 132491150 132491319 -9780125 + MIR SINE MIR 39 225 -37 246 194 48 48 chr9 132491926 132491988 -9779456 + MIR3 SINE MIR 138 199 -9 2251 97 7 0 chr9 132492279 132492588 -9778856 - AluSp SINE Alu 0 313 3 2455 75 0 0 chr9 132492590 132492898 -9778546 - AluSg SINE Alu -2 308 1 320 291 198 8 chr9 132492933 132493234 -9778210 + L2 LINE L2 2700 3053 -219 181 292 56 14 chr9 132493970 132494042 -9777402 - MIR SINE MIR -89 119 45 2269 105 0 3 chr9 132494437 132494743 -9776701 + AluSq SINE Alu 6 310 -3 229 315 93 7 chr9 132494908 132495045 -9776399 + MIR SINE MIR 30 174 -65 191 238 250 0 chr9 132495230 132495310 -9776134 - MIR3 SINE MIR -14 194 95 784 263 80 5 chr9 132495389 132495613 -9775831 - MIR SINE MIR -7 255 15 313 284 23 64 chr9 132496604 132496792 -9774652 - MIR SINE MIR -63 145 12 334 315 0 11 chr9 132497125 132497264 -9774180 + (TG)n Simple_repeat Simple_repeat 2 140 -40 3361 115 65 41 chr9 132497264 132497389 -9774055 - MER41C LTR ERV1 0 554 433 2022 90 26 58 chr9 132497389 132497701 -9773743 + AluSx SINE Alu 5 306 -6 3361 115 65 41 chr9 132497701 132498116 -9773328 - MER41C LTR ERV1 -121 433 1 334 315 0 11 chr9 132498116 132498157 -9773287 + (TG)n Simple_repeat Simple_repeat 140 180 0 457 277 6 0 chr9 132498733 132498910 -9772534 + (TG)n Simple_repeat Simple_repeat 2 179 0 256 240 21 0 chr9 132498928 132499127 -9772317 + (TG)n Simple_repeat Simple_repeat 1 203 0 286 215 14 25 chr9 132499146 132499428 -9772016 + (TG)n Simple_repeat Simple_repeat 1 279 0 242 215 17 17 chr9 132499466 132499643 -9771801 + (TG)n Simple_repeat Simple_repeat 2 178 0 436 278 23 0 chr9 132499700 132499876 -9771568 + (TG)n Simple_repeat Simple_repeat 1 180 0 188 210 12 0 chr9 132499903 132499984 -9771460 + (TG)n Simple_repeat Simple_repeat 1 82 0 318 158 39 8 chr9 132500017 132500144 -9771300 + (TG)n Simple_repeat Simple_repeat 1 131 0 231 258 151 11 chr9 132501170 132501263 -9770181 + L2 LINE L2 3206 3311 -2 1962 104 3 52 chr9 132501270 132501578 -9769866 + AluSx SINE Alu 1 293 -19 316 211 0 0 chr9 132501583 132501635 -9769809 - L1MC4 LINE L1 -1339 6703 6652 368 206 130 48 chr9 132502554 132502793 -9768651 - L2 LINE L2 -336 2977 2715 404 297 36 22 chr9 132502877 132503015 -9768429 - MIR SINE MIR -119 143 4 2214 116 3 0 chr9 132503443 132503754 -9767690 + AluSx SINE Alu 1 312 0 3789 154 43 7 chr9 132503780 132504521 -9766923 + L1MB3 LINE L1 5401 6168 -15 1620 143 75 10 chr9 132504564 132504857 -9766587 - AluJo SINE Alu 0 312 1 386 362 46 0 chr9 132504935 132505087 -9766357 + MIR SINE MIR 85 243 -19 191 250 94 0 chr9 132505179 132505243 -9766201 - MIR SINE MIR -58 150 81 272 297 10 94 chr9 132505322 132505438 -9766006 - MLT1J2 LTR MaLR 0 450 357 2291 99 0 0 chr9 132505438 132505741 -9765703 - AluSx SINE Alu -9 303 1 272 297 10 94 chr9 132505741 132505826 -9765618 - MLT1J2 LTR MaLR -93 357 266 1908 100 3 90 chr9 132506081 132506244 -9765200 - AluSx SINE Alu -19 293 170 294 29 0 0 chr9 132506244 132506279 -9765165 + (TG)n Simple_repeat Simple_repeat 2 36 0 1908 100 3 90 chr9 132506279 132506436 -9765008 - AluSx SINE Alu -142 170 1 373 309 42 18 chr9 132506486 132506654 -9764790 - L1MC/D LINE L1 -2037 5771 5600 2264 89 0 0 chr9 132507241 132507532 -9763912 + AluSg1 SINE Alu 1 291 -18 421 296 31 37 chr9 132508700 132508862 -9762582 + MIR SINE MIR 14 174 -88 792 103 0 17 chr9 132509620 132509736 -9761708 - AluJb SINE Alu -7 305 192 191 107 0 0 chr9 132509808 132509836 -9761608 - MIR SINE MIR -118 144 117 180 111 0 0 chr9 132509961 132509988 -9761456 + (TA)n Simple_repeat Simple_repeat 1 27 0 265 202 11 53 chr9 132510498 132510686 -9760758 + GA-rich Low_complexity Low_complexity 1 180 0 312 270 0 30 chr9 132510694 132510794 -9760650 + G-rich Low_complexity Low_complexity 4 100 0 22 0 0 0 chr9 132510893 132510915 -9760529 + AT_rich Low_complexity Low_complexity 1 22 0 202 265 8 61 chr9 132510984 132511116 -9760328 + CT-rich Low_complexity Low_complexity 4 128 0 213 244 0 0 chr9 132511527 132511572 -9759872 + (CAAT)n Simple_repeat Simple_repeat 2 46 0 232 319 43 35 chr9 132511580 132511721 -9759723 + MIR3 SINE MIR 5 146 -62 432 0 0 0 chr9 132512657 132512705 -9758739 + (CA)n Simple_repeat Simple_repeat 1 48 0 935 112 0 8 chr9 132512736 132512870 -9758574 - FLAM_C SINE Alu 0 133 1 431 293 29 14 chr9 132513244 132513384 -9758060 - MIR SINE MIR -108 154 13 361 183 240 10 chr9 132513750 132513854 -9757590 + MIR3 SINE MIR 35 162 -46 1975 91 51 0 chr9 132513854 132514128 -9757316 + AluSp SINE Alu 12 299 -14 201 295 86 50 chr9 132514196 132514335 -9757109 - L2 LINE L2 -1 3271 3128 411 300 13 27 chr9 132514373 132514523 -9756921 - MIR SINE MIR -17 245 98 834 183 0 0 chr9 132514535 132514672 -9756772 - FRAM SINE Alu -39 137 1 452 245 87 22 chr9 132514837 132515021 -9756423 - MLT1F LTR MaLR -6 536 341 507 259 38 8 chr9 132515124 132515255 -9756189 - MLT1G LTR MaLR -455 135 1 363 254 92 7 chr9 132515286 132515428 -9756016 + MER103 DNA DNA 1 154 -12 2169 115 3 10 chr9 132515604 132515918 -9755526 + AluSx SINE Alu 1 312 0 366 199 11 10 chr9 132516383 132516480 -9754964 + MIR SINE MIR 101 197 -63 249 245 137 0 chr9 132516960 132517062 -9754382 + MIR SINE MIR 70 185 -77 2197 113 0 0 chr9 132517270 132517571 -9753873 - AluSx SINE Alu -11 301 1 400 279 206 8 chr9 132518057 132518319 -9753125 + L2 LINE L2 2917 3230 -42 369 316 103 0 chr9 132518491 132518627 -9752817 + MIR SINE MIR 113 262 0 2296 100 0 3 chr9 132518795 132519106 -9752338 - AluSg SINE Alu 0 310 1 188 245 19 19 chr9 132519306 132519359 -9752085 + MIR SINE MIR 91 143 -65 262 254 49 0 chr9 132519677 132519799 -9751645 - L1ME4a LINE L1 -2 6119 5992 2318 91 0 0 chr9 132519817 132520126 -9751318 - AluSx SINE Alu -3 309 1 768 220 0 0 chr9 132520332 132520555 -9750889 + (TG)n Simple_repeat Simple_repeat 1 223 0 229 261 0 0 chr9 132520556 132520602 -9750842 + (CGTG)n Simple_repeat Simple_repeat 4 49 0 2090 110 13 0 chr9 132520961 132521262 -9750182 + AluSq SINE Alu 1 305 -8 188 309 48 48 chr9 132521271 132521355 -9750089 - MIR SINE MIR -97 165 82 315 247 36 75 chr9 132522073 132522225 -9749219 - L1MC4 LINE L1 -1338 6984 1918 313 247 37 25 chr9 132522167 132522248 -9749196 + L1MCa LINE L1 1995 2076 -4350 * 1776 171 3 13 chr9 132522251 132522369 -9749075 + AluJo SINE Alu 6 124 -188 272 25 50 0 chr9 132522369 132522409 -9749035 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1776 171 3 13 chr9 132522409 132522599 -9748845 + AluJo SINE Alu 124 311 -1 2002 138 0 10 chr9 132522802 132523113 -9748331 + AluSx SINE Alu 1 308 -4 230 211 44 67 chr9 132523299 132523389 -9748055 - L2 LINE L2 -42 3230 3143 2341 77 0 0 chr9 132523417 132523715 -9747729 + AluY SINE Alu 1 298 -13 995 152 36 0 chr9 132523855 132524020 -9747424 + AluJb SINE Alu 138 308 -4 983 101 0 0 chr9 132524597 132524726 -9746718 - AluSq/x SINE Alu -184 129 1 241 94 0 0 chr9 132524775 132524807 -9746637 + Alu SINE Alu 1 32 -268 1498 91 5 0 chr9 132524812 132525010 -9746434 + AluSg/x SINE Alu 105 303 -9 227 368 35 35 chr9 132525013 132525331 -9746113 + L1MCa LINE L1 2534 2854 -3572 1978 126 3 10 chr9 132525331 132525625 -9745819 - AluSx SINE Alu -20 292 1 227 368 35 35 chr9 132525625 132525939 -9745505 + L1MCa LINE L1 2853 3166 -3260 1028 318 75 49 chr9 132525968 132526482 -9744962 + L1MCa LINE L1 3222 3721 -2705 1822 146 0 55 chr9 132526482 132526812 -9744632 + AluJb SINE Alu 1 312 0 1028 318 75 49 chr9 132526812 132526959 -9744485 + L1MCa LINE L1 3721 3863 -2563 1790 128 30 14 chr9 132526959 132527256 -9744188 + AluSx SINE Alu 1 302 -10 1028 318 75 49 chr9 132527256 132527354 -9744090 + L1MCa LINE L1 3863 4038 -2388 876 272 135 11 chr9 132527648 132528012 -9743432 + MLT1I LTR MaLR 1 409 0 1922 82 44 7 chr9 132528077 132528369 -9743075 + AluSc SINE Alu 1 302 0 328 346 46 7 chr9 132528369 132528652 -9742792 + L1MCa LINE L1 4306 4599 -1827 2018 125 0 3 chr9 132528822 132529118 -9742326 + AluSp SINE Alu 1 295 -18 1684 192 22 0 chr9 132529244 132529557 -9741887 - 7SLRNA srpRNA srpRNA 0 320 1 292 318 89 3 chr9 132529620 132529847 -9741597 - L1MEc LINE L1 -771 1805 1575 245 274 21 32 chr9 132529928 132530023 -9741421 + MIR SINE MIR 13 106 -156 523 249 88 121 chr9 132530026 132530125 -9741319 - MLT1H LTR MaLR -76 473 372 962 318 27 143 chr9 132530125 132530191 -9741253 - MLT1B LTR MaLR 0 390 318 1788 146 0 17 chr9 132530191 132530513 -9740931 + AluJb SINE Alu 2 318 0 962 318 27 143 chr9 132530513 132530649 -9740795 - MLT1B LTR MaLR -72 318 168 2250 84 0 13 chr9 132530649 132530957 -9740487 - AluY SINE Alu -7 304 1 962 318 27 143 chr9 132530957 132531081 -9740363 - MLT1B LTR MaLR -222 168 122 2065 92 0 3 chr9 132531081 132531364 -9740080 + AluY SINE Alu 22 303 -8 962 318 27 143 chr9 132531364 132531474 -9739970 - MLT1B LTR MaLR -268 122 1 523 249 88 121 chr9 132531474 132531572 -9739872 - MLT1H LTR MaLR -177 372 272 1760 175 0 16 chr9 132531572 132531881 -9739563 - AluJo SINE Alu -8 304 1 523 249 88 121 chr9 132531881 132532103 -9739341 - MLT1H LTR MaLR -277 272 67 2231 114 0 0 chr9 132532114 132532421 -9739023 - AluSg SINE Alu -3 307 1 1840 170 3 3 chr9 132532423 132532723 -9738721 - AluJb SINE Alu -12 300 1 311 280 0 34 chr9 132532776 132532843 -9738601 + MIR SINE MIR 97 160 -102 1883 147 10 10 chr9 132532843 132533150 -9738294 + AluJb SINE Alu 1 307 -5 311 280 0 34 chr9 132533150 132533200 -9738244 + MIR SINE MIR 160 210 -52 945 170 0 0 chr9 132533360 132533513 -9737931 - AluJo SINE Alu -159 153 1 838 268 29 73 chr9 132533516 132533695 -9737749 - L1MEc LINE L1 -4881 1324 1139 1781 158 0 37 chr9 132533695 132534018 -9737426 - AluJo SINE Alu -1 311 1 838 268 29 73 chr9 132534018 132534206 -9737238 - L1MEc LINE L1 -5066 1139 990 1881 158 0 10 chr9 132534206 132534510 -9736934 - AluSx SINE Alu 0 312 12 838 268 29 73 chr9 132534510 132534728 -9736716 - L1MEc LINE L1 -5215 990 764 225 337 37 32 chr9 132534940 132535127 -9736317 + L1ME4a LINE L1 4861 5048 -1098 447 286 52 32 chr9 132535220 132535538 -9735906 + L1ME4a LINE L1 5177 5504 -743 592 143 0 0 chr9 132535569 132535653 -9735791 - AluJ/FLAM SINE Alu -225 87 4 2059 112 0 3 chr9 132535703 132536010 -9735434 - AluSq SINE Alu 0 306 1 1852 159 0 7 chr9 132536014 132536316 -9735128 - AluJo SINE Alu -12 300 1 737 273 74 9 chr9 132536382 132536613 -9734831 + MLT1C LTR MaLR 222 467 0 424 242 156 26 chr9 132536629 132536860 -9734584 + L1ME4a LINE L1 5563 5823 -298 387 238 106 33 chr9 132536907 132537058 -9734386 - MIR SINE MIR -51 211 50 238 214 56 34 chr9 132537228 132537317 -9734127 + L1ME4a LINE L1 5957 6047 -74 222 239 67 104 chr9 132538503 132538637 -9732807 + L2 LINE L2 3144 3272 0 206 355 6 44 chr9 132538692 132538875 -9732569 + (CGTG)n Simple_repeat Simple_repeat 2 177 0 1041 143 6 23 chr9 132539005 132539180 -9732264 - AluJb SINE Alu -24 288 117 23 0 0 0 chr9 132539219 132539242 -9732202 + GC_rich Low_complexity Low_complexity 1 23 0 2101 118 0 0 chr9 132539598 132539920 -9731524 + AluSx SINE Alu 1 322 0 868 125 7 7 chr9 132539937 132540073 -9731371 - AluJb SINE Alu -176 136 1 406 260 98 8 chr9 132540259 132540382 -9731062 + MIR SINE MIR 119 252 -10 246 333 20 10 chr9 132541035 132541134 -9730310 + MIR SINE MIR 49 148 -60 2124 132 3 0 chr9 132541171 132541482 -9729962 - AluSx SINE Alu 0 312 1 204 267 0 0 chr9 132542933 132542978 -9728466 + (CG)n Simple_repeat Simple_repeat 2 46 0 316 269 60 19 chr9 132543487 132543615 -9727829 + MIR SINE MIR 41 171 -37 340 262 56 40 chr9 132543852 132543978 -9727466 + MIR SINE MIR 19 146 -62 374 259 102 71 chr9 132544737 132544934 -9726510 - MLT1K LTR MaLR 0 588 386 219 278 42 28 chr9 132545052 132545124 -9726320 - L2 LINE L2 -186 3086 3014 2164 108 7 0 chr9 132545494 132545791 -9725653 + AluSq SINE Alu 1 299 -14 443 248 166 13 chr9 132546299 132546456 -9724988 + MER91A DNA MER1_type 1 181 -15 2301 88 3 0 chr9 132546518 132546815 -9724629 - AluSx SINE Alu -14 298 1 3283 232 54 11 chr9 132546867 132547879 -9723565 - L1MD2 LINE L1 -227 6132 5059 1500 150 6 118 chr9 132547879 132548218 -9723226 - AluJb SINE Alu -11 301 1 3283 232 54 11 chr9 132548218 132548383 -9723061 - L1MD2 LINE L1 -1300 5059 4903 288 0 0 0 chr9 132548522 132548554 -9722890 + (TG)n Simple_repeat Simple_repeat 1 32 0 1899 147 0 0 chr9 132548554 132548833 -9722611 - AluSx SINE Alu -33 279 1 1520 144 140 8 chr9 132548836 132549100 -9722344 - AluJb SINE Alu -2 300 2 244 271 43 0 chr9 132549277 132549347 -9722097 - MER91 DNA MER1_type 0 140 68 1617 183 0 11 chr9 132549424 132549703 -9721741 + AluJo SINE Alu 11 286 -26 180 0 0 0 chr9 132549706 132549726 -9721718 + (TAA)n Simple_repeat Simple_repeat 2 21 0 396 258 53 53 chr9 132549994 132550145 -9721299 - MIR SINE MIR -70 192 42 207 216 149 14 chr9 132551873 132551947 -9719497 - MER5A DNA MER1_type -102 87 4 352 279 27 0 chr9 132552010 132552121 -9719323 + Zaphod DNA AcHobo 3918 4031 0 405 307 83 28 chr9 132552196 132552414 -9719030 + L2 LINE L2 2811 3040 -232 287 361 34 29 chr9 132552520 132552725 -9718719 + MIR SINE MIR 29 234 -28 2174 122 0 0 chr9 132552739 132553078 -9718366 - AluSx SINE Alu 0 339 1 330 301 127 51 chr9 132554226 132554462 -9716982 + L1MEd LINE L1 958 1211 -4908 432 228 34 1 chr9 132554466 132555365 -9716079 + (TGGA)n Simple_repeat Simple_repeat 1 928 0 363 174 52 7 chr9 132555413 132555568 -9715876 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 477 218 24 3 chr9 132555623 132555917 -9715527 + (TGGA)n Simple_repeat Simple_repeat 1 300 0 507 227 23 2 chr9 132555993 132556431 -9715013 + (TGGA)n Simple_repeat Simple_repeat 1 447 0 279 210 48 6 chr9 132556457 132556624 -9714820 + (TGGA)n Simple_repeat Simple_repeat 2 175 0 402 197 26 21 chr9 132556637 132556873 -9714571 + (TGGA)n Simple_repeat Simple_repeat 1 237 0 526 289 90 25 chr9 132556917 132557118 -9714326 + MIR SINE MIR 39 252 -10 278 194 14 0 chr9 132558601 132558673 -9712771 + (CA)n Simple_repeat Simple_repeat 2 74 0 223 191 0 0 chr9 132559379 132559421 -9712023 - MIR SINE MIR -61 147 106 476 191 14 14 chr9 132560789 132560930 -9710514 + CT-rich Low_complexity Low_complexity 3 143 0 58 68 0 0 chr9 132561014 132561087 -9710357 + AT_rich Low_complexity Low_complexity 1 73 0 349 148 25 12 chr9 132561292 132561373 -9710071 + CT-rich Low_complexity Low_complexity 3 84 0 242 153 7 73 chr9 132561620 132561770 -9709674 + CT-rich Low_complexity Low_complexity 1 140 0 204 135 0 0 chr9 132562035 132562072 -9709372 + (TCC)n Simple_repeat Simple_repeat 2 38 0 208 266 16 31 chr9 132562233 132562297 -9709147 + CT-rich Low_complexity Low_complexity 5 67 0 181 155 52 69 chr9 132562952 132563010 -9708434 - MIR SINE MIR -86 122 66 207 276 53 13 chr9 132564154 132564230 -9707214 + MIR SINE MIR 35 113 -149 242 273 15 0 chr9 132564640 132564706 -9706738 + MIR SINE MIR 92 158 -104 381 279 68 21 chr9 132565267 132565457 -9705987 + L2 LINE L2 3094 3292 -21 189 74 0 0 chr9 132565467 132565494 -9705950 + (TGAG)n Simple_repeat Simple_repeat 4 30 0 198 297 11 11 chr9 132565952 132566043 -9705401 + L2 LINE L2 2920 3010 -303 668 211 93 6 chr9 132566353 132566514 -9704930 + MIR SINE MIR 20 194 -68 812 252 83 47 chr9 132566916 132567234 -9704210 + L2 LINE L2 2382 2687 -627 1707 152 3 3 chr9 132567234 132567517 -9703927 + AluJo SINE Alu 1 283 -29 297 68 0 0 chr9 132567517 132567561 -9703883 + (CA)n Simple_repeat Simple_repeat 2 45 0 812 252 83 47 chr9 132567561 132567602 -9703842 + L2 LINE L2 2686 2755 -559 610 302 145 30 chr9 132567576 132567977 -9703467 + L2 LINE L2 2867 3313 0 * 252 289 0 12 chr9 132568987 132569070 -9702374 + (CACCAT)n Simple_repeat Simple_repeat 2 83 0 753 271 88 35 chr9 132569071 132569110 -9702334 + MLT1C LTR MaLR 1 36 -431 2269 103 0 3 chr9 132569110 132569420 -9702024 + AluSq SINE Alu 1 309 -4 753 271 88 35 chr9 132569420 132569757 -9701687 + MLT1C LTR MaLR 36 397 -70 907 125 0 27 chr9 132569791 132569975 -9701469 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 209 224 17 0 chr9 132569976 132570034 -9701410 + (CAT)n Simple_repeat Simple_repeat 1 59 0 637 246 37 59 chr9 132570038 132570442 -9701002 - MLT1D LTR MaLR 0 505 1 234 0 0 0 chr9 132570566 132570592 -9700852 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1950 129 0 0 chr9 132570592 132570872 -9700572 - AluSx SINE Alu -32 280 1 264 299 94 26 chr9 132570881 132570998 -9700446 - MIR SINE MIR -110 152 28 409 337 35 45 chr9 132571060 132571262 -9700182 + MIR3 SINE MIR 2 201 -7 309 19 0 57 chr9 132571468 132571521 -9699923 + (GGGTG)n Simple_repeat Simple_repeat 3 52 0 1992 108 14 0 chr9 132571784 132572062 -9699382 - AluSx SINE Alu -11 301 20 22 56 0 0 chr9 132572629 132572665 -9698779 + GC_rich Low_complexity Low_complexity 1 36 0 221 159 0 23 chr9 132572709 132572753 -9698691 + C-rich Low_complexity Low_complexity 6 48 0 24 0 0 0 chr9 132573156 132573180 -9698264 + GC_rich Low_complexity Low_complexity 1 24 0 198 371 34 8 chr9 132574749 132574927 -9696517 + MIR SINE MIR 17 241 -21 426 265 43 21 chr9 132575043 132575184 -9696260 + MIR SINE MIR 21 163 -62 * 644 301 15 5 chr9 132575171 132575370 -9696074 - MIR SINE MIR 0 262 62 415 279 16 16 chr9 132575906 132576028 -9695416 + MIR SINE MIR 43 164 -98 510 236 136 26 chr9 132576126 132576317 -9695127 - MIR SINE MIR -43 219 8 277 61 20 20 chr9 132576654 132576703 -9694741 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 203 167 0 0 chr9 132576734 132576770 -9694674 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 206 125 0 25 chr9 132576770 132576810 -9694634 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 215 323 54 31 chr9 132576947 132577077 -9694367 + MIR SINE MIR 16 148 -60 1295 198 57 33 chr9 132577077 132577375 -9694069 - MLT1A1 LTR MaLR 0 365 57 2202 118 0 0 chr9 132577375 132577681 -9693763 - AluSx SINE Alu -4 308 3 1295 198 57 33 chr9 132577681 132577715 -9693729 - MLT1A1 LTR MaLR -308 57 25 203 214 82 51 chr9 132577925 132578023 -9693421 + MIR3 SINE MIR 1 101 -107 2179 87 7 17 chr9 132578221 132578521 -9692923 + AluSp SINE Alu 2 298 -15 2286 105 0 0 chr9 132578533 132578837 -9692607 + AluSq SINE Alu 1 304 -9 181 300 60 0 chr9 132578855 132578905 -9692539 - L2 LINE L2 -33 3239 3187 564 191 116 20 chr9 132578919 132579066 -9692378 + MER117 DNA MER1_type 1 161 -36 415 264 36 22 chr9 132580161 132580344 -9691100 + MIR3 SINE MIR 2 245 -17 290 329 106 11 chr9 132580392 132580819 -9690625 + L2 LINE L2 2791 3271 -1 434 318 0 0 chr9 132581443 132581553 -9689891 - MIR3 SINE MIR -15 193 84 236 150 0 0 chr9 132581686 132581726 -9689718 + MIR SINE MIR 83 122 -140 267 312 56 35 chr9 132581961 132582105 -9689339 + MIR SINE MIR 33 179 -61 210 325 167 0 chr9 132582149 132582263 -9689181 - MIR3 SINE MIR -35 173 41 188 83 0 56 chr9 132582969 132583005 -9688439 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 2107 135 0 6 chr9 132583007 132583319 -9688125 - AluSx SINE Alu -1 311 2 392 282 23 115 chr9 132583364 132583669 -9687775 - L2 LINE L2 0 3272 2996 292 213 16 0 chr9 132583674 132583735 -9687709 + MIR SINE MIR 82 143 -65 870 142 0 0 chr9 132583806 132583940 -9687504 + AluSg/x SINE Alu 167 300 -10 587 188 138 0 chr9 132584476 132584614 -9686830 - MIR SINE MIR -14 248 92 217 250 0 14 chr9 132584673 132584745 -9686699 + L2 LINE L2 2892 2962 -310 389 342 117 31 chr9 132584792 132585014 -9686430 + MIR SINE MIR 7 247 -15 766 196 0 0 chr9 132585041 132585174 -9686270 + FLAM_A SINE Alu 1 133 0 273 159 0 0 chr9 132585434 132585478 -9685966 - L2 LINE L2 -5 3308 3265 1841 143 0 54 chr9 132585878 132586009 -9685435 + AluJb SINE Alu 1 138 -174 1622 151 0 8 chr9 132586009 132586260 -9685184 - AluSx SINE Alu -23 289 41 1841 143 0 54 chr9 132586260 132586442 -9685002 + AluJb SINE Alu 138 297 -15 441 15 45 0 chr9 132587706 132587772 -9683672 + (TG)n Simple_repeat Simple_repeat 1 69 0 317 24 24 0 chr9 132587771 132587813 -9683631 + (GA)n Simple_repeat Simple_repeat 1 43 0 * 212 370 28 0 chr9 132588225 132588333 -9683111 - L2 LINE L2 -1 3271 3161 246 217 0 33 chr9 132588423 132588483 -9682961 - MIR SINE MIR -141 121 64 354 107 0 0 chr9 132588727 132588783 -9682661 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 499 192 42 33 chr9 132588820 132588940 -9682504 - MER45A DNA AcHobo 0 178 58 1223 239 40 15 chr9 132589044 132589370 -9682074 + MER46C DNA MER2_type 3 336 -2 2248 84 0 7 chr9 132589647 132589945 -9681499 - AluY SINE Alu -15 296 1 439 346 164 24 chr9 132590015 132590356 -9681088 - L1ME4a LINE L1 -54 6067 5679 373 348 50 28 chr9 132591139 132591320 -9680124 - MIR SINE MIR -77 185 1 195 167 0 0 chr9 132591333 132591375 -9680069 + (CTGGGG)n Simple_repeat Simple_repeat 3 44 0 1701 96 0 0 chr9 132592643 132592863 -9678581 + AluSx SINE Alu 53 272 -40 1482 161 16 0 chr9 132592863 132593105 -9678339 + AluJb SINE Alu 55 301 -11 657 266 75 49 chr9 132593440 132593846 -9677598 - MLT1J LTR MaLR 0 511 54 766 195 25 80 chr9 132594259 132594418 -9677026 - MER53 DNA DNA 0 189 41 2035 113 0 3 chr9 132594418 132594742 -9676702 - AluSc SINE Alu 0 323 1 766 195 25 80 chr9 132594742 132594781 -9676663 - MER53 DNA DNA -148 41 1 406 282 9 18 chr9 132594976 132595110 -9676334 + MIR SINE MIR 20 156 -63 210 231 31 15 chr9 132596287 132596417 -9675027 + (CGTG)n Simple_repeat Simple_repeat 4 135 0 289 297 94 39 chr9 132597173 132597301 -9674143 - MIR3 SINE MIR -50 158 24 183 330 88 0 chr9 132597375 132597466 -9673978 + MIR SINE MIR 25 123 -139 180 351 158 9 chr9 132597739 132597853 -9673591 + MIR SINE MIR 113 243 -19 789 22 0 0 chr9 132597874 132597989 -9673455 - AluY SINE Alu 0 306 192 216 0 0 0 chr9 132598212 132598236 -9673208 + (TTG)n Simple_repeat Simple_repeat 2 25 0 733 119 0 0 chr9 132598307 132598416 -9673028 - L1MA5 LINE L1 -2 6298 6190 1508 157 99 0 chr9 132598456 132598718 -9672726 - AluJo SINE Alu -18 294 7 347 249 3 0 chr9 132598751 132598901 -9672543 - L1PA16 LINE L1 -341 5825 5694 2038 141 3 3 chr9 132599201 132599679 -9671765 - AluSx SINE Alu 0 478 1 346 244 106 32 chr9 132600304 132600427 -9671017 + MIR SINE MIR 48 179 -83 2131 98 31 0 chr9 132600780 132601066 -9670378 - AluSp SINE Alu -18 295 1 337 262 99 41 chr9 132601166 132601366 -9670078 + MIR SINE MIR 24 250 -12 443 206 28 9 chr9 132601444 132601551 -9669893 + MLT1I LTR MaLR 69 177 -232 1134 109 0 0 chr9 132601551 132601698 -9669746 + FRAM SINE Alu 19 165 -11 2355 81 0 37 chr9 132601698 132602020 -9669424 + AluSq SINE Alu 1 310 -3 750 181 40 114 chr9 132602028 132602255 -9669189 + MLT1C LTR MaLR 180 466 -1 216 171 0 24 chr9 132602708 132602749 -9668695 - L2 LINE L2 -74 3239 3200 1263 137 10 29 chr9 132602944 132603149 -9668295 - AluJb SINE Alu 0 312 112 2330 77 7 0 chr9 132603379 132603677 -9667767 - AluSp SINE Alu -13 300 1 2320 96 0 6 chr9 132604120 132604434 -9667010 - AluSx SINE Alu 0 312 1 1914 148 3 3 chr9 132604435 132604725 -9666719 - AluJo SINE Alu -17 295 6 593 27 13 0 chr9 132604733 132604758 -9666686 + (TTCC)n Simple_repeat Simple_repeat 1 101 0 593 27 13 0 chr9 132604758 132604833 -9666611 + (TTCC)n Simple_repeat Simple_repeat 4 79 0 1964 148 26 0 chr9 132604839 132605143 -9666301 - AluSx SINE Alu 0 312 1 1308 180 39 42 chr9 132605207 132605518 -9665926 - MLT1B LTR MaLR 0 390 81 927 120 0 0 chr9 132605518 132605651 -9665793 + AluSq/x SINE Alu 1 133 -180 1394 114 8 72 chr9 132605687 132605949 -9665495 + AluSx SINE Alu 59 303 -9 431 161 11 11 chr9 132605952 132606039 -9665405 - MLT1B LTR MaLR -303 87 1 677 264 52 41 chr9 132606141 132606486 -9664958 - MLT1H1 LTR MaLR -233 357 2 229 300 11 11 chr9 132606655 132606745 -9664699 + MLT1I LTR MaLR 88 177 -232 563 193 50 8 chr9 132607173 132607292 -9664152 - MIR SINE MIR -131 131 8 1803 141 3 26 chr9 132607331 132607508 -9663936 - AluJb SINE Alu -3 309 140 2243 105 3 6 chr9 132607508 132607821 -9663623 - AluSx SINE Alu 0 312 1 1803 141 3 26 chr9 132607821 132607947 -9663497 - AluJb SINE Alu -172 140 13 449 320 6 19 chr9 132608201 132608357 -9663087 - MIR SINE MIR -7 255 102 246 207 98 12 chr9 132608359 132608441 -9663003 - MER5C DNA MER1_type -2 322 234 537 224 52 0 chr9 132608464 132608580 -9662864 - MER5C DNA MER1_type -200 124 3 298 253 0 35 chr9 132608580 132608663 -9662781 - MIR SINE MIR -170 92 13 2216 118 0 0 chr9 132609070 132609376 -9662068 - AluSg SINE Alu -4 306 1 1893 163 0 10 chr9 132609377 132609683 -9661761 - AluJb SINE Alu -9 303 1 940 128 0 0 chr9 132609936 132610069 -9661375 + AluSq/x SINE Alu 1 133 -180 327 229 60 12 chr9 132610072 132610155 -9661289 + L1ME4a LINE L1 6029 6115 -6 211 327 203 24 chr9 132611331 132611661 -9659783 - L2 LINE L2 -474 2840 2452 827 160 0 14 chr9 132611728 132611872 -9659572 - FLAM_C SINE Alu -1 142 1 272 347 53 7 chr9 132612302 132612452 -9658992 + L2 LINE L2 2931 3087 -185 357 158 58 18 chr9 132612509 132612680 -9658764 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 406 294 0 33 chr9 132612681 132612861 -9658583 + G-rich Low_complexity Low_complexity 6 179 0 * 447 184 58 20 chr9 132612838 132613259 -9658185 + (TGGA)n Simple_repeat Simple_repeat 1 437 0 400 79 0 50 chr9 132613363 132613464 -9657980 + (TGG)n Simple_repeat Simple_repeat 2 97 0 563 150 0 48 chr9 132613565 132614029 -9657415 + (TGG)n Simple_repeat Simple_repeat 1 441 0 603 291 17 51 chr9 132615044 132615281 -9656163 + MIR SINE MIR 27 255 -7 218 176 20 0 chr9 132615286 132615337 -9656107 + C-rich Low_complexity Low_complexity 1 52 0 741 192 32 0 chr9 132615940 132616197 -9655247 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 545 206 11 11 chr9 132616230 132616410 -9655034 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 921 172 0 0 chr9 132616440 132616620 -9654824 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 869 162 6 0 chr9 132616650 132616823 -9654621 + (TGGA)n Simple_repeat Simple_repeat 1 174 0 245 296 8 0 chr9 132616857 132616989 -9654455 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 357 360 20 7 chr9 132617160 132617313 -9654131 + MIR SINE MIR 49 203 -59 1074 206 137 8 chr9 132617314 132617442 -9654002 + AluY SINE Alu 1 111 -189 216 0 0 0 chr9 132617442 132617466 -9653978 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1074 206 137 8 chr9 132617466 132617605 -9653839 + AluY SINE Alu 111 300 0 279 282 27 0 chr9 132617883 132617967 -9653477 + MIR SINE MIR 61 147 -61 354 235 0 26 chr9 132619772 132619925 -9651519 + CT-rich Low_complexity Low_complexity 2 150 0 550 250 27 153 chr9 132620720 132620870 -9650574 + L1ME1 LINE L1 5521 5688 -478 1945 130 0 70 chr9 132620870 132621000 -9650444 + AluJb SINE Alu 6 143 -169 2276 66 14 0 chr9 132621000 132621288 -9650156 + AluY SINE Alu 1 292 -19 1945 130 0 70 chr9 132621288 132621307 -9650137 + AluJb SINE Alu 143 162 -150 2270 108 0 0 chr9 132621307 132621613 -9649831 + AluSq SINE Alu 2 307 -6 1945 130 0 70 chr9 132621613 132621792 -9649652 + AluJb SINE Alu 162 312 0 550 250 27 153 chr9 132621792 132622220 -9649224 + L1ME1 LINE L1 5688 5967 -199 1615 168 72 7 chr9 132622220 132622391 -9649053 - AluJo SINE Alu -1 311 112 234 81 0 0 chr9 132622391 132622428 -9649016 + (TATG)n Simple_repeat Simple_repeat 2 38 0 1615 168 72 7 chr9 132622428 132622548 -9648896 - AluJo SINE Alu -200 112 1 550 250 27 153 chr9 132622548 132622720 -9648724 + L1ME1 LINE L1 5967 6159 -7 214 390 165 0 chr9 132622731 132622895 -9648549 + MIR SINE MIR 55 245 -17 208 252 154 32 chr9 132622992 132623115 -9648329 - L2 LINE L2 -26 3246 3109 204 287 129 10 chr9 132623112 132623213 -9648231 - L2 LINE L2 -339 2975 2863 * 257 335 82 13 chr9 132623485 132623643 -9647801 + L2 LINE L2 3103 3271 -1 184 283 22 0 chr9 132623661 132623707 -9647737 - L2 LINE L2 -88 3225 3179 2090 122 3 13 chr9 132623918 132624230 -9647214 + AluSx SINE Alu 1 309 -3 198 330 23 34 chr9 132624975 132625063 -9646381 - MIR SINE MIR -106 156 70 * 327 251 116 26 chr9 132625061 132625199 -9646245 + MIR SINE MIR 8 158 -61 200 250 181 0 chr9 132625527 132625599 -9645845 - L2 LINE L2 -10 3262 3178 301 292 85 15 chr9 132625678 132625808 -9645636 - L2 LINE L2 -214 3058 2920 549 330 64 13 chr9 132625877 132626087 -9645357 - L2 LINE L2 -556 2758 2533 2092 127 0 16 chr9 132626087 132626403 -9645041 + AluJo SINE Alu 1 311 -1 549 330 64 13 chr9 132626403 132626428 -9645016 - L2 LINE L2 -781 2533 2511 300 301 166 19 chr9 132627410 132627729 -9643715 + L2 LINE L2 2838 3203 -69 192 200 0 0 chr9 132627856 132627901 -9643543 + (TG)n Simple_repeat Simple_repeat 1 45 0 336 282 0 58 chr9 132627929 132628117 -9643327 + (TG)n Simple_repeat Simple_repeat 1 177 0 248 182 0 159 chr9 132628164 132628378 -9643066 + (TG)n Simple_repeat Simple_repeat 1 180 0 333 224 0 104 chr9 132628410 132628611 -9642833 + (TG)n Simple_repeat Simple_repeat 1 180 0 313 310 148 7 chr9 132629035 132629177 -9642267 + MIR SINE MIR 84 245 -17 233 286 8 67 chr9 132629537 132629656 -9641788 - MIR SINE MIR -71 137 25 1741 110 4 8 chr9 132629775 132630046 -9641398 + AluSx SINE Alu 39 308 0 1752 171 26 3 chr9 132630173 132630477 -9640967 - AluJb SINE Alu -1 311 1 276 271 0 29 chr9 132630489 132630559 -9640885 + MIR SINE MIR 92 159 -103 898 261 13 25 chr9 132631133 132631371 -9640073 + MIR SINE MIR 20 254 -8 353 308 43 0 chr9 132631892 132632009 -9639435 + L2 LINE L2 3151 3272 0 185 338 0 14 chr9 132632376 132632450 -9638994 + L2 LINE L2 3200 3272 0 596 127 136 9 chr9 132632470 132632580 -9638864 + FLAM_C SINE Alu 10 133 -10 2089 128 7 0 chr9 132632593 132632897 -9638547 + AluSx SINE Alu 1 306 -6 486 321 64 28 chr9 132633065 132633283 -9638161 - MIR SINE MIR -4 258 33 667 281 88 52 chr9 132634552 132635028 -9636416 + MLT1J LTR MaLR 12 504 -7 1263 131 45 119 chr9 132635342 132635443 -9636001 + AluJo SINE Alu 1 108 -204 2249 72 17 0 chr9 132635443 132635733 -9635711 - AluSq SINE Alu -18 295 1 1263 131 45 119 chr9 132635733 132635774 -9635670 + AluJo SINE Alu 108 150 -162 216 0 0 0 chr9 132635774 132635798 -9635646 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2001 123 35 0 chr9 132635800 132636084 -9635360 - AluSx SINE Alu -18 294 1 1263 131 45 119 chr9 132636084 132636274 -9635170 + AluJo SINE Alu 151 312 0 202 283 0 0 chr9 132636380 132636426 -9635018 - MIR SINE MIR -99 163 118 234 311 109 8 chr9 132636604 132636723 -9634721 + MIR3 SINE MIR 77 207 -1 393 306 7 48 chr9 132637039 132637186 -9634258 + MIR SINE MIR 84 224 -38 2017 139 0 0 chr9 132637212 132637538 -9633906 - AluSx SINE Alu 0 312 3 618 164 77 0 chr9 132637709 132637813 -9633631 + FLAM_C SINE Alu 2 113 -30 1979 153 0 16 chr9 132637831 132638145 -9633299 + AluJb SINE Alu 1 309 -3 346 210 10 10 chr9 132638146 132638246 -9633198 + GA-rich Low_complexity Low_complexity 4 103 0 448 299 171 24 chr9 132638409 132638737 -9632707 - L3 LINE CR1 -11 1566 1191 474 313 24 27 chr9 132639174 132639420 -9632024 + MIR SINE MIR 8 250 -12 2073 119 20 0 chr9 132639426 132639719 -9631725 - AluSx SINE Alu -13 299 1 418 267 30 15 chr9 132639858 132639993 -9631451 - MER5A DNA MER1_type -2 187 51 215 375 31 0 chr9 132640026 132640122 -9631322 - L2 LINE L2 -17 3255 3157 325 245 130 70 chr9 132640426 132640559 -9630885 + MIR SINE MIR 15 165 -97 752 222 80 0 chr9 132640559 132640721 -9630723 + MER69A DNA AcHobo 1 175 -2 325 245 130 70 chr9 132640721 132640787 -9630657 + MIR SINE MIR 165 226 -36 312 268 31 63 chr9 132641349 132641476 -9629968 - MIR SINE MIR -127 135 13 222 255 0 0 chr9 132642124 132642171 -9629273 + G-rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr9 132642171 132642200 -9629244 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 132642287 132642308 -9629136 + GC_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 132642435 132642460 -9628984 + GC_rich Low_complexity Low_complexity 1 25 0 206 260 60 0 chr9 132643088 132643138 -9628306 + MIR SINE MIR 210 262 0 241 351 11 11 chr9 132643635 132643729 -9627715 + MIR SINE MIR 166 259 -3 270 279 44 0 chr9 132643928 132643996 -9627448 + MIR SINE MIR 80 150 -112 181 273 0 0 chr9 132644057 132644101 -9627343 + MIR SINE MIR 59 102 -106 619 278 62 19 chr9 132644150 132644359 -9627085 - MIR SINE MIR -27 235 18 2028 118 10 16 chr9 132644369 132644734 -9626710 + AluJb SINE Alu 1 363 0 21 36 0 0 chr9 132644741 132644769 -9626675 + AT_rich Low_complexity Low_complexity 1 28 0 248 309 154 20 chr9 132645064 132645310 -9626134 - L2 LINE L2 -347 2967 2689 318 26 0 0 chr9 132645423 132645462 -9625982 + (TG)n Simple_repeat Simple_repeat 2 40 0 264 127 254 0 chr9 132646781 132646836 -9624608 + L2 LINE L2 3245 3313 0 204 329 26 13 chr9 132647181 132647257 -9624187 + MIR SINE MIR 116 192 -70 332 311 74 7 chr9 132647306 132647441 -9624003 + MIR3 SINE MIR 3 146 -62 300 283 0 9 chr9 132647527 132647640 -9623804 + (CA)n Simple_repeat Simple_repeat 2 113 0 234 219 9 57 chr9 132647991 132648096 -9623348 + (CCCCG)n Simple_repeat Simple_repeat 4 103 0 245 253 33 0 chr9 132648324 132648410 -9623034 + MIR SINE MIR 53 136 -72 255 226 16 16 chr9 132648447 132648509 -9622935 - MIR SINE MIR -66 142 81 187 268 61 37 chr9 132648630 132648712 -9622732 + MIR SINE MIR 84 167 -95 2411 47 7 0 chr9 132648807 132649103 -9622341 - AluY SINE Alu -11 300 3 254 261 189 20 chr9 132649632 132649785 -9621659 + L2 LINE L2 2837 3015 -257 226 240 23 39 chr9 132649824 132649953 -9621491 + (CA)n Simple_repeat Simple_repeat 1 127 0 228 190 0 127 chr9 132650417 132650496 -9620948 + MIR SINE MIR 92 160 -102 2274 94 0 0 chr9 132651376 132651673 -9619771 - AluSx SINE Alu -15 297 1 293 272 124 47 chr9 132651733 132651902 -9619542 + MIR SINE MIR 33 214 -48 362 234 7 104 chr9 132652239 132652321 -9619123 - MIR3 SINE MIR -15 193 131 2301 86 3 3 chr9 132652321 132652624 -9618820 + AluSp SINE Alu 1 303 -10 362 234 7 104 chr9 132652624 132652695 -9618749 - MIR3 SINE MIR -77 131 55 898 252 36 9 chr9 132652716 132652938 -9618506 + MIR SINE MIR 34 261 -1 288 317 40 0 chr9 132652998 132653099 -9618345 - L2 LINE L2 -46 3226 3122 210 71 0 0 chr9 132653266 132653294 -9618150 + (GGAGA)n Simple_repeat Simple_repeat 4 31 0 1796 224 58 60 chr9 132653767 132654218 -9617226 + MER115 DNA AcHobo 117 568 -125 2383 68 3 0 chr9 132654218 132654514 -9616930 - AluSp SINE Alu -15 298 2 1796 224 58 60 chr9 132654514 132654615 -9616829 + MER115 DNA AcHobo 568 668 -25 424 303 111 24 chr9 132654983 132655191 -9616253 + MIR SINE MIR 15 240 -22 306 271 65 58 chr9 132655214 132655369 -9616075 - MIR SINE MIR -99 163 8 317 237 113 10 chr9 132655779 132655876 -9615568 + MIR3 SINE MIR 99 205 -3 25 51 0 0 chr9 132656198 132656237 -9615207 + GC_rich Low_complexity Low_complexity 1 39 0 261 139 0 0 chr9 132656509 132656552 -9614892 + (GGAGA)n Simple_repeat Simple_repeat 2 44 0 188 189 33 22 chr9 132656583 132656673 -9614771 + GA-rich Low_complexity Low_complexity 1 91 0 204 59 0 59 chr9 132656837 132656871 -9614573 + (CGGGGG)n Simple_repeat Simple_repeat 4 35 0 247 314 41 72 chr9 132657135 132657329 -9614115 - L2 LINE L2 -57 3215 3028 606 207 0 0 chr9 132658231 132658410 -9613034 + (TG)n Simple_repeat Simple_repeat 1 179 0 1157 163 0 5 chr9 132659071 132659255 -9612189 - AluSx SINE Alu -129 183 1 336 295 20 67 chr9 132659256 132659405 -9612039 - MIR SINE MIR -102 160 19 214 229 0 0 chr9 132660208 132660256 -9611188 + L3b LINE CR1 1338 1385 -198 825 254 38 42 chr9 132660437 132660673 -9610771 - MIR SINE MIR 0 262 28 333 389 77 5 chr9 132661122 132661343 -9610101 - L2 LINE L2 -181 3091 2855 218 190 138 0 chr9 132661557 132661615 -9609829 - L2 LINE L2 -275 2997 2932 1596 130 27 104 chr9 132661615 132661818 -9609626 - AluYb8 SINE Alu -6 312 144 2356 66 0 22 chr9 132661818 132662135 -9609309 - AluY SINE Alu -1 310 1 1596 130 27 104 chr9 132662135 132662269 -9609175 - AluYb8 SINE Alu -174 144 1 1088 194 0 0 chr9 132662549 132662724 -9608720 - FAM SINE Alu 0 175 1 181 323 16 16 chr9 132662821 132662883 -9608561 - L3 LINE CR1 -907 670 609 365 227 42 50 chr9 132663306 132663383 -9608061 - MER46C DNA MER2_type -1 337 260 2194 100 0 22 chr9 132663383 132663702 -9607742 + AluSx SINE Alu 1 312 0 365 227 42 50 chr9 132663702 132663743 -9607701 - MER46C DNA MER2_type -78 260 220 326 279 13 0 chr9 132663795 132663874 -9607570 + MIR SINE MIR 111 190 -72 920 244 194 18 chr9 132663901 132664241 -9607203 + L2 LINE L2 2912 3311 -2 294 296 51 51 chr9 132664620 132664850 -9606594 - MIR SINE MIR -19 243 13 193 129 0 0 chr9 132665057 132665088 -9606356 + MIR SINE MIR 121 151 -111 230 105 26 0 chr9 132665138 132665176 -9606268 + L1MD2 LINE L1 5870 5908 -451 1752 144 0 0 chr9 132665180 132665443 -9606001 - AluJb SINE Alu -6 306 44 657 184 109 105 chr9 132665443 132665617 -9605827 + L1MD2 LINE L1 6112 6284 -75 546 159 177 9 chr9 132665617 132665730 -9605714 - FLAM_C SINE Alu -1 132 1 2278 64 27 0 chr9 132665736 132666032 -9605412 - AluY SINE Alu -7 304 1 657 184 109 105 chr9 132666032 132666089 -9605355 + L1MD2 LINE L1 6288 6351 -8 261 216 0 0 chr9 132666092 132666143 -9605301 + MER66A LTR ERV1 287 337 -141 21 36 0 0 chr9 132666144 132666172 -9605272 + AT_rich Low_complexity Low_complexity 1 28 0 1705 136 0 0 chr9 132666617 132666859 -9604585 + AluSx SINE Alu 10 251 -61 252 356 30 10 chr9 132666986 132667087 -9604357 + MIR3 SINE MIR 79 181 -27 333 322 111 0 chr9 132667277 132667354 -9604090 - L2 LINE L2 -6 3307 3240 2030 151 3 0 chr9 132667354 132667665 -9603779 + AluSx SINE Alu 1 312 0 333 322 111 0 chr9 132667665 132667758 -9603686 - L2 LINE L2 -73 3240 3118 2413 65 3 3 chr9 132667758 132668065 -9603379 + AluY SINE Alu 1 307 -4 211 435 24 0 chr9 132668256 132668380 -9603064 - L2 LINE L2 -490 2824 2698 1516 245 74 41 chr9 132668717 132668901 -9602543 + L1ME3A LINE L1 5231 5408 -762 1970 168 16 58 chr9 132668901 132669224 -9602220 - MLT1A1 LTR MaLR 0 365 59 2076 133 3 0 chr9 132669224 132669524 -9601920 - AluSg SINE Alu -8 302 2 1970 168 16 58 chr9 132669524 132669581 -9601863 - MLT1A1 LTR MaLR -306 59 1 1516 245 74 41 chr9 132669581 132669851 -9601593 + L1ME3A LINE L1 5408 5668 -502 1805 181 27 0 chr9 132669851 132670151 -9601293 + AluJb SINE Alu 2 307 -5 1516 245 74 41 chr9 132670151 132670437 -9601007 + L1ME3A LINE L1 5668 6002 -168 2151 121 0 0 chr9 132671026 132671337 -9600107 - AluSx SINE Alu 0 312 2 224 222 16 32 chr9 132671625 132671688 -9599756 - MIR SINE MIR -24 238 177 1160 266 71 67 chr9 132671718 132672055 -9599389 - L1MEc LINE L1 -4080 2181 1847 2256 126 3 0 chr9 132672055 132672364 -9599080 + AluSp SINE Alu 1 310 -3 1160 266 71 67 chr9 132672364 132673044 -9598400 - L1MEc LINE L1 -4414 1847 1171 7498 183 133 20 chr9 132673044 132674620 -9596824 + MER52A LTR ERV1 1 1755 0 1160 266 71 67 chr9 132674620 132674692 -9596752 - L1MEc LINE L1 -5090 1171 1101 1736 194 21 0 chr9 132674692 132674975 -9596469 - AluJo SINE Alu -21 291 3 1160 266 71 67 chr9 132674975 132675063 -9596381 - L1MEc LINE L1 -5160 1101 876 1685 154 48 4 chr9 132675101 132675373 -9596071 - AluSx SINE Alu -22 290 7 833 167 12 30 chr9 132675380 132675548 -9595896 + MLT1C LTR MaLR 1 165 -302 2032 152 7 0 chr9 132675550 132675847 -9595597 - AluJb SINE Alu -13 299 1 1950 165 0 7 chr9 132675877 132676180 -9595264 + AluSx SINE Alu 1 301 -11 938 115 15 0 chr9 132676186 132676316 -9595128 + AluJb SINE Alu 1 132 -180 24 53 0 0 chr9 132676343 132676381 -9595063 + AT_rich Low_complexity Low_complexity 1 38 0 1164 241 11 4 chr9 132676398 132676664 -9594780 + MLT1C LTR MaLR 200 467 0 449 170 0 11 chr9 132676749 132676843 -9594601 + CT-rich Low_complexity Low_complexity 3 95 0 1558 156 0 39 chr9 132676847 132676960 -9594484 - AluJo SINE Alu -66 246 130 2410 103 0 13 chr9 132676960 132677271 -9594173 - AluSg SINE Alu -3 307 1 1558 156 0 39 chr9 132677271 132677413 -9594031 - AluJo SINE Alu -182 130 1 399 251 91 10 chr9 132677429 132677628 -9593816 - L1MEc LINE L1 -5301 769 555 331 195 178 49 chr9 132677871 132678056 -9593388 - L1MEc LINE L1 -5608 462 254 2278 92 10 13 chr9 132678063 132678377 -9593067 - AluSp SINE Alu 0 313 1 239 244 89 0 chr9 132678382 132678472 -9592972 - L1MEc LINE L1 -5972 98 1 355 289 26 9 chr9 132678595 132678709 -9592735 + MIR SINE MIR 32 147 -115 2203 117 10 0 chr9 132678782 132679082 -9592362 + AluSq SINE Alu 1 303 -10 366 233 41 62 chr9 132679523 132679637 -9591807 + MIR3 SINE MIR 40 152 -56 2057 132 47 0 chr9 132679637 132679933 -9591511 - AluSx SINE Alu 0 312 3 366 233 41 62 chr9 132679933 132679964 -9591480 + MIR3 SINE MIR 152 182 -26 231 386 35 0 chr9 132679967 132680081 -9591363 + MIR SINE MIR 30 147 -61 363 281 138 20 chr9 132680451 132680654 -9590790 + L2 LINE L2 3018 3244 -28 2385 103 0 0 chr9 132680729 132681031 -9590413 - AluSx SINE Alu -10 302 1 185 274 20 0 chr9 132681282 132681333 -9590111 + L2 LINE L2 3221 3272 0 2021 102 0 0 chr9 132681491 132681746 -9589698 - AluSx SINE Alu -13 299 45 183 80 0 0 chr9 132682353 132682378 -9589066 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 213 280 200 0 chr9 132682388 132682463 -9588981 - L2 LINE L2 -46 3226 3137 197 281 39 86 chr9 132682561 132682689 -9588755 - MIR SINE MIR -112 150 29 264 206 0 15 chr9 132682747 132682815 -9588629 - MER33 DNA MER1_type -22 302 236 1724 133 0 4 chr9 132682815 132683055 -9588389 + AluSx SINE Alu 1 239 -73 450 56 268 0 chr9 132683108 132683179 -9588265 + AluSc SINE Alu 211 300 -9 846 185 32 5 chr9 132683181 132683370 -9588074 - MER33 DNA MER1_type -87 237 44 234 247 0 62 chr9 132683391 132683472 -9587972 + MIR SINE MIR 56 131 -77 779 156 94 0 chr9 132683782 132683942 -9587502 - L1MC1 LINE L1 -13 6320 6146 210 268 80 80 chr9 132684262 132684400 -9587044 - L2 LINE L2 -7 3306 3169 1335 131 0 0 chr9 132684791 132684974 -9586470 - AluSg/x SINE Alu -4 306 124 1642 260 60 78 chr9 132685021 132685872 -9585572 + L1MEd LINE L1 2 837 -5282 2123 138 0 13 chr9 132685883 132686188 -9585256 + AluJb SINE Alu 1 301 -11 2081 124 0 0 chr9 132686192 132686475 -9584969 + AluSx SINE Alu 30 312 0 2231 266 143 32 chr9 132686528 132687440 -9584004 + HAL1 LINE L1 4 1076 -1431 2135 120 0 42 chr9 132687440 132687748 -9583696 + AluSx SINE Alu 1 295 -17 2231 266 143 32 chr9 132687748 132688008 -9583436 + HAL1 LINE L1 1076 1306 -1201 233 160 0 0 chr9 132688036 132688086 -9583358 - Alu SINE Alu 0 301 252 1080 103 0 39 chr9 132688106 132688261 -9583183 - AluSq/x SINE Alu -164 149 1 1760 149 7 7 chr9 132688283 132688584 -9582860 + AluJo SINE Alu 1 301 0 316 305 37 0 chr9 132688585 132688667 -9582777 + HAL1 LINE L1 1319 1403 -1104 1229 120 0 6 chr9 132688671 132688838 -9582606 - AluSg/x SINE Alu -14 296 131 2315 265 83 47 chr9 132688851 132689445 -9581999 + HAL1 LINE L1 1390 1961 -546 2573 52 0 13 chr9 132689445 132689753 -9581691 + AluY SINE Alu 1 304 -7 2315 265 83 47 chr9 132689753 132689998 -9581446 + HAL1 LINE L1 1961 2196 -311 2384 81 0 0 chr9 132689998 132690324 -9581120 - AluSp SINE Alu 0 327 2 2315 265 83 47 chr9 132690324 132690372 -9581072 + HAL1 LINE L1 2196 2241 -266 222 37 0 0 chr9 132690372 132690399 -9581045 + (CA)n Simple_repeat Simple_repeat 2 28 0 2315 265 83 47 chr9 132690399 132690569 -9580875 + HAL1 LINE L1 2241 2488 -19 1834 193 89 104 chr9 132691065 132691331 -9580113 + L1M4 LINE L1 4030 4299 -1847 2142 146 0 0 chr9 132691331 132691632 -9579812 + AluSx SINE Alu 1 301 -11 1834 193 89 104 chr9 132691632 132692200 -9579244 + L1M4 LINE L1 4299 4851 -1295 1914 137 23 17 chr9 132692204 132692503 -9578941 - AluSx SINE Alu -11 301 1 848 156 7 0 chr9 132692505 132692640 -9578804 - AluSq/x SINE Alu -176 136 1 1541 220 28 32 chr9 132692641 132693001 -9578443 + L1M4 LINE L1 4847 5206 -940 2390 113 0 0 chr9 132693001 132693311 -9578133 + AluSx SINE Alu 1 310 -2 1541 220 28 32 chr9 132693311 132693414 -9578030 + L1M4 LINE L1 5206 5308 -838 1897 169 10 10 chr9 132693414 132693721 -9577723 + AluJb SINE Alu 1 307 -5 2048 144 10 0 chr9 132693725 132694016 -9577428 - AluSq SINE Alu -19 294 1 208 274 0 0 chr9 132695464 132695515 -9575929 + (CG)n Simple_repeat Simple_repeat 1 51 0 337 269 60 19 chr9 132696013 132696141 -9575303 + MIR SINE MIR 41 171 -37 362 262 56 40 chr9 132696378 132696504 -9574940 + MIR SINE MIR 19 146 -62 328 255 109 65 chr9 132697263 132697447 -9573997 - MLT1K LTR MaLR 0 588 397 228 278 42 28 chr9 132697578 132697650 -9573794 - L2 LINE L2 -186 3086 3014 2291 108 7 0 chr9 132698020 132698317 -9573127 + AluSq SINE Alu 1 299 -14 472 242 166 13 chr9 132698825 132698982 -9572462 + MER91A DNA MER1_type 1 181 -15 2438 88 3 0 chr9 132699044 132699341 -9572103 - AluSx SINE Alu -14 298 1 3205 223 56 13 chr9 132699393 132700405 -9571039 - L1MD2 LINE L1 -227 6132 5059 1615 150 6 118 chr9 132700405 132700744 -9570700 - AluJb SINE Alu -11 301 1 3205 223 56 13 chr9 132700744 132700909 -9570535 - L1MD2 LINE L1 -1300 5059 4903 288 0 0 0 chr9 132701048 132701080 -9570364 + (TG)n Simple_repeat Simple_repeat 1 32 0 2018 147 0 0 chr9 132701080 132701359 -9570085 - AluSx SINE Alu -33 279 1 1520 144 140 8 chr9 132701362 132701626 -9569818 - AluJb SINE Alu -2 300 2 257 271 43 0 chr9 132701803 132701873 -9569571 + MER91 DNA MER1_type 1 73 -67 1720 183 0 11 chr9 132701950 132702229 -9569215 + AluJo SINE Alu 11 286 -26 180 0 0 0 chr9 132702232 132702252 -9569192 + (TAA)n Simple_repeat Simple_repeat 2 21 0 431 232 53 53 chr9 132702520 132702671 -9568773 - MIR SINE MIR -70 192 42 218 216 149 14 chr9 132704399 132704473 -9566971 - MER5A DNA MER1_type -102 87 4 325 219 37 0 chr9 132704565 132704647 -9566797 + Zaphod DNA AcHobo 3947 4031 0 414 283 92 50 chr9 132704722 132704962 -9566482 + L2 LINE L2 2811 3060 -212 289 361 34 29 chr9 132705046 132705251 -9566193 + MIR SINE MIR 29 234 -28 2295 122 0 0 chr9 132705265 132705604 -9565840 - AluSx SINE Alu 0 339 1 329 288 131 55 chr9 132706752 132706988 -9564456 + L1MEd LINE L1 958 1211 -4908 432 209 35 0 chr9 132706992 132707164 -9564280 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 383 230 34 0 chr9 132707175 132707501 -9563943 + (TGGA)n Simple_repeat Simple_repeat 1 337 0 425 235 29 0 chr9 132707548 132707891 -9563553 + (TGGA)n Simple_repeat Simple_repeat 1 353 0 363 174 52 7 chr9 132707939 132708094 -9563350 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 477 193 28 6 chr9 132708149 132708325 -9563119 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 348 249 22 2 chr9 132708387 132708806 -9562638 + (TGGA)n Simple_repeat Simple_repeat 1 427 0 252 212 0 0 chr9 132708866 132708932 -9562512 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 462 262 21 3 chr9 132709007 132709342 -9562102 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 838 135 27 14 chr9 132709922 132710070 -9561374 + AluSg/x SINE Alu 156 305 -7 * 854 121 8 8 chr9 132710069 132710193 -9561251 - AluJo/FLAM SINE Alu -186 126 3 2511 77 3 0 chr9 132710434 132710744 -9560700 - AluSp SINE Alu -2 311 1 1077 224 50 97 chr9 132710749 132711089 -9560355 - L1ME3A LINE L1 -5 6165 5810 1616 200 35 3 chr9 132711089 132711379 -9560065 - AluJb SINE Alu -13 299 1 376 98 0 0 chr9 132711383 132711444 -9560000 - L1MA1 LINE L1 0 6302 6242 1077 224 50 97 chr9 132711444 132711459 -9559985 - L1ME3A LINE L1 -363 5807 5793 2309 106 0 16 chr9 132711459 132711632 -9559812 - AluSx SINE Alu -6 306 139 2295 99 0 3 chr9 132711632 132711936 -9559508 - AluSg SINE Alu -7 303 1 2309 106 0 16 chr9 132711936 132712073 -9559371 - AluSx SINE Alu -173 139 1 1077 224 50 97 chr9 132712073 132712176 -9559268 - L1ME3A LINE L1 -377 5793 5723 3011 159 33 24 chr9 132712177 132712726 -9558718 + MER39B LTR ERV1 1 544 -109 1888 117 85 0 chr9 132712726 132713009 -9558435 - AluSx SINE Alu -5 307 1 2356 87 7 0 chr9 132713009 132713307 -9558137 - AluSc SINE Alu -8 301 1 3011 159 33 24 chr9 132713307 132713336 -9558108 + MER39B LTR ERV1 543 585 -68 1783 130 0 0 chr9 132713340 132713606 -9557838 - AluSx SINE Alu 0 309 44 811 120 0 0 chr9 132713608 132713716 -9557728 - AluJb SINE Alu -204 108 1 273 146 12 134 chr9 132713716 132713798 -9557646 - L1M4 LINE L1 -2290 3856 3785 736 214 16 22 chr9 132713806 132713988 -9557456 - L1ME3A LINE L1 -669 5497 5317 859 132 0 0 chr9 132714003 132714124 -9557320 + AluSq/x SINE Alu 1 121 -192 688 305 9 4 chr9 132714345 132714571 -9556873 - AluJo SINE Alu -84 228 2 301 159 87 0 chr9 132714576 132714645 -9556799 - L1MA2 LINE L1 0 6304 6230 1394 162 5 0 chr9 132714678 132714894 -9556550 - AluSx SINE Alu -95 217 1 889 123 0 0 chr9 132714947 132715083 -9556361 + AluJb SINE Alu 169 304 0 508 290 44 48 chr9 132715108 132715654 -9555790 + L1MEd LINE L1 975 1607 -883 1494 216 4 0 chr9 132715654 132715922 -9555522 + AluJo SINE Alu 1 269 -43 508 290 44 48 chr9 132715922 132715933 -9555511 + L1MEd LINE L1 1607 1617 -873 2477 97 0 0 chr9 132715958 132716267 -9555177 - AluSg SINE Alu -1 309 1 871 251 146 69 chr9 132716487 132716639 -9554805 - MLT1J LTR MaLR -9 502 363 2326 107 10 0 chr9 132716639 132716947 -9554497 - AluSq SINE Alu -2 311 1 2222 110 3 0 chr9 132716953 132717243 -9554201 - AluSq SINE Alu -22 291 1 871 251 146 69 chr9 132717243 132717549 -9553895 - MLT1J LTR MaLR -152 359 1 2291 72 7 4 chr9 132717837 132718115 -9553329 + AluSq SINE Alu 1 279 -34 495 198 45 0 chr9 132718271 132718382 -9553062 + L1M4 LINE L1 4730 4845 -1301 1935 166 0 10 chr9 132718421 132718723 -9552721 - AluJb SINE Alu -13 299 1 907 127 0 8 chr9 132719156 132719290 -9552154 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr9 132719306 132719327 -9552117 + AT_rich Low_complexity Low_complexity 1 21 0 527 241 75 47 chr9 132719408 132719851 -9551593 + L1MEd LINE L1 2877 3331 -2798 2438 63 0 13 chr9 132719911 132720198 -9551246 + AluY SINE Alu 2 286 -25 261 0 0 0 chr9 132720198 132720227 -9551217 + (CA)n Simple_repeat Simple_repeat 2 30 0 2438 63 0 13 chr9 132720227 132720240 -9551204 + AluY SINE Alu 286 298 -13 2481 91 0 0 chr9 132720300 132720609 -9550835 + AluSg SINE Alu 1 309 -1 1260 91 23 17 chr9 132720611 132720787 -9550657 + AluSg/x SINE Alu 134 310 0 2331 100 0 0 chr9 132721687 132721988 -9549456 + AluSx SINE Alu 1 301 -11 210 236 34 67 chr9 132722671 132722760 -9548684 + L2 LINE L2 3203 3288 -25 1904 110 27 50 chr9 132723284 132723583 -9547861 - AluSq SINE Alu -21 292 1 278 300 56 0 chr9 132723738 132723828 -9547616 + MIR3 SINE MIR 109 203 -5 214 333 62 0 chr9 132723841 132723922 -9547522 + MIR SINE MIR 70 155 -107 376 329 77 13 chr9 132724021 132724176 -9547268 + MIR SINE MIR 17 181 -81 526 226 48 72 chr9 132725129 132725337 -9546107 - MIR SINE MIR -44 218 16 209 209 23 0 chr9 132725545 132725588 -9545856 + GA-rich Low_complexity Low_complexity 3 46 0 1949 129 3 3 chr9 132726886 132727180 -9544264 + AluSx SINE Alu 1 294 -18 2014 122 10 0 chr9 132727197 132727485 -9543959 + AluSx SINE Alu 12 302 -10 274 330 32 0 chr9 132727519 132727613 -9543831 - L2 LINE L2 0 3313 3217 275 95 0 0 chr9 132727901 132727943 -9543501 + AluY SINE Alu 217 258 -43 272 324 0 0 chr9 132728027 132728101 -9543343 - MIR SINE MIR 0 262 189 * 554 264 74 70 chr9 132728093 132728351 -9543093 - L2 LINE L2 -1 3312 3054 1311 172 24 111 chr9 132728358 132728588 -9542856 - MLT1A1 LTR MaLR -20 345 159 2158 108 23 0 chr9 132728588 132728894 -9542550 - AluSq SINE Alu 0 313 1 1311 172 24 111 chr9 132728894 132729041 -9542403 - MLT1A1 LTR MaLR -206 159 1 247 303 40 0 chr9 132729048 132729147 -9542297 - L2 LINE L2 -240 3032 2930 320 356 0 12 chr9 132729152 132729329 -9542115 - MIR SINE MIR -67 141 12 416 282 38 0 chr9 132729376 132729507 -9541937 + MIR3 SINE MIR 2 137 -71 1149 143 17 0 chr9 132729781 132729956 -9541488 - AluJo SINE Alu -36 276 99 2302 93 3 3 chr9 132730249 132730559 -9540885 + AluSx SINE Alu 1 310 -2 352 306 9 0 chr9 132730650 132730761 -9540683 - MLT1L LTR MaLR -4 611 500 1620 166 4 0 chr9 132731060 132731313 -9540131 + AluJb SINE Alu 40 293 -19 2243 104 33 17 chr9 132731641 132732118 -9539326 + MER41A LTR ERV1 1 505 -130 1658 84 50 4 chr9 132732121 132732359 -9539085 - AluSx SINE Alu -20 292 44 348 43 0 0 chr9 132732360 132732406 -9539038 + MER41A LTR ERV1 496 541 -13 507 290 39 35 chr9 132732430 132732661 -9538783 - L2 LINE L2 -191 3122 2891 275 335 96 0 chr9 132732766 132732954 -9538490 + L1ME2 LINE L1 5788 5993 -171 333 100 0 0 chr9 132734749 132734799 -9536645 + (GGGA)n Simple_repeat Simple_repeat 1 50 0 208 291 63 25 chr9 132735230 132735309 -9536135 + MIR3 SINE MIR 99 180 -28 189 0 0 0 chr9 132735531 132735552 -9535892 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 386 56 0 83 chr9 132735968 132735989 -9535455 + MADE1 DNA Mariner 15 36 -44 1981 127 6 41 chr9 132735989 132736304 -9535140 - AluSx SINE Alu -8 304 1 386 56 0 83 chr9 132736304 132736354 -9535090 + MADE1 DNA Mariner 36 80 0 188 321 130 31 chr9 132736354 132736516 -9534928 - L2 LINE L2 -605 2709 2532 1767 77 17 0 chr9 132736536 132736770 -9534674 - AluSp SINE Alu -3 310 73 228 140 0 80 chr9 132738850 132738900 -9532544 + LTR29 LTR ERV1 137 182 -440 1322 211 124 54 chr9 132738916 132739182 -9532262 + LTR48B LTR ERV1 93 339 -305 2181 109 7 0 chr9 132739182 132739486 -9531958 - AluY SINE Alu -5 306 1 1322 211 124 54 chr9 132739486 132739659 -9531785 + LTR48B LTR ERV1 339 576 -68 2177 86 0 43 chr9 132739659 132739963 -9531481 - AluSg SINE Alu -19 291 1 1322 211 124 54 chr9 132739963 132740038 -9531406 + LTR48B LTR ERV1 576 644 0 360 176 14 14 chr9 132740182 132740256 -9531188 + LTR48B LTR ERV1 571 644 0 1517 131 72 62 chr9 132740350 132740641 -9530803 + AluJb SINE Alu 1 294 -18 209 272 39 58 chr9 132741162 132741265 -9530179 + MIR SINE MIR 29 129 -133 2014 123 17 3 chr9 132741296 132741597 -9529847 - AluSx SINE Alu -4 308 4 2170 114 0 3 chr9 132741615 132741921 -9529523 - AluSx SINE Alu -7 305 1 2319 86 0 0 chr9 132742217 132742509 -9528935 - AluSx SINE Alu -20 292 1 378 217 70 9 chr9 132742518 132742633 -9528811 - L1ME3A LINE L1 -6 6164 6043 197 139 0 0 chr9 132743065 132743101 -9528343 - MIR SINE MIR -69 139 104 483 352 113 15 chr9 132743294 132743683 -9527761 + L2 LINE L2 2836 3262 -10 2024 118 13 13 chr9 132743684 132743988 -9527456 + AluSx SINE Alu 1 304 -8 308 345 122 0 chr9 132744036 132744175 -9527269 - MIR3 SINE MIR -24 184 29 221 203 34 17 chr9 132744245 132744304 -9527140 + CT-rich Low_complexity Low_complexity 2 61 0 347 288 121 0 chr9 132744514 132744646 -9526798 + MIR SINE MIR 37 184 -78 260 270 110 10 chr9 132744750 132744850 -9526594 - MIR SINE MIR -118 144 35 25 51 0 0 chr9 132744953 132744992 -9526452 + GC_rich Low_complexity Low_complexity 1 39 0 220 115 0 39 chr9 132745034 132745086 -9526358 + (GGA)n Simple_repeat Simple_repeat 1 50 0 30 27 0 0 chr9 132745086 132745123 -9526321 + GC_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr9 132745258 132745294 -9526150 + GC_rich Low_complexity Low_complexity 1 36 0 198 224 0 0 chr9 132745395 132745480 -9525964 + G-rich Low_complexity Low_complexity 6 90 0 193 180 80 0 chr9 132745778 132745828 -9525616 + MIR SINE MIR 100 153 -55 466 306 55 30 chr9 132745920 132746119 -9525325 - L2 LINE L2 -16 3297 3094 270 173 19 0 chr9 132747163 132747215 -9524229 - L2 LINE L2 0 3313 3261 210 247 258 0 chr9 132747306 132747395 -9524049 + MIR3 SINE MIR 14 125 -83 404 296 78 14 chr9 132747906 132748048 -9523396 + MIR SINE MIR 6 156 -106 1954 127 0 54 chr9 132749337 132749517 -9521927 - AluSx SINE Alu -13 299 142 1685 100 0 0 chr9 132749517 132749746 -9521698 - AluSg/x SINE Alu 0 312 84 1954 127 0 54 chr9 132749746 132749881 -9521563 - AluSx SINE Alu -170 142 1 557 122 11 0 chr9 132750030 132750119 -9521325 + MLT1B LTR MaLR 1 90 -300 597 168 99 8 chr9 132750119 132750245 -9521199 + MLT1A1 LTR MaLR 1 138 -227 1991 143 70 0 chr9 132750245 132750603 -9520841 - MSTA LTR MaLR 0 428 46 2024 101 0 4 chr9 132750603 132750879 -9520565 - AluSq SINE Alu -15 298 24 1888 118 0 0 chr9 132750979 132751242 -9520202 + AluSc SINE Alu 36 298 -11 1039 176 33 19 chr9 132751242 132751452 -9519992 + MLT1A1 LTR MaLR 150 362 -3 1455 195 45 0 chr9 132751452 132751744 -9519700 + MLT1B LTR MaLR 86 390 0 533 294 14 0 chr9 132751745 132751888 -9519556 - MIR SINE MIR -98 164 20 356 200 25 0 chr9 132752162 132752322 -9519122 + (CA)n Simple_repeat Simple_repeat 2 165 0 407 178 53 9 chr9 132752348 132752695 -9518749 + (CA)n Simple_repeat Simple_repeat 1 362 0 576 318 25 16 chr9 132753364 132753655 -9517789 - L2 LINE L2 -213 3059 2767 308 269 43 0 chr9 132753865 132753958 -9517486 - MIR3 SINE MIR -18 190 94 2319 96 3 0 chr9 132753991 132754303 -9517141 - AluSp SINE Alu 0 313 1 913 184 6 6 chr9 132754304 132754462 -9516982 - AluSg/x SINE Alu -18 292 135 358 236 45 11 chr9 132754465 132754554 -9516890 - L2 LINE L2 -12 3260 3169 224 236 18 0 chr9 132754588 132754643 -9516801 + GA-rich Low_complexity Low_complexity 2 57 0 342 350 68 28 chr9 132754654 132754831 -9516613 - MIR SINE MIR -1 261 78 228 67 0 0 chr9 132755388 132755418 -9516026 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 187 345 36 0 chr9 132755418 132755473 -9515971 - L2 LINE L2 -13 3300 3244 403 326 77 27 chr9 132755574 132755958 -9515486 - L2 LINE L2 -183 3089 2682 488 301 79 32 chr9 132756096 132756312 -9515132 - MIR SINE MIR -29 233 8 793 216 113 18 chr9 132756654 132756964 -9514480 - MLT1D LTR MaLR 0 467 147 1414 176 35 35 chr9 132757119 132757426 -9514018 + AluJb SINE Alu 1 307 0 310 336 21 35 chr9 132757969 132758112 -9513332 + MLT1I LTR MaLR 252 392 -17 1322 256 67 44 chr9 132758436 132758758 -9512686 + Charlie4a DNA MER1_type 1 339 -1622 2165 116 0 0 chr9 132758758 132759061 -9512383 - AluSx SINE Alu -9 303 1 1322 256 67 44 chr9 132759061 132759234 -9512210 + Charlie4a DNA MER1_type 339 507 -1 471 270 169 18 chr9 132760022 132760205 -9511239 + MIR SINE MIR 9 218 -44 234 91 0 0 chr9 132760212 132760245 -9511199 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1526 260 38 2 chr9 132760285 132760708 -9510736 + MLT1J LTR MaLR 36 473 -38 286 258 57 32 chr9 132760742 132760866 -9510578 - L2 LINE L2 -64 3249 3123 231 260 21 54 chr9 132761033 132761179 -9510265 + MIR SINE MIR 23 247 -15 1752 164 38 0 chr9 132761198 132761491 -9509953 + AluJb SINE Alu 5 308 -4 257 73 0 24 chr9 132761508 132761549 -9509895 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 193 365 19 19 chr9 132761625 132761732 -9509712 - L2 LINE L2 -209 3063 2957 2068 117 0 44 chr9 132761905 132762222 -9509222 - AluSx SINE Alu 0 312 10 351 326 134 47 chr9 132762352 132762717 -9508727 + L2 LINE L2 2855 3251 -21 1870 118 83 0 chr9 132763382 132763671 -9507773 + AluSq SINE Alu 1 313 0 2260 84 10 0 chr9 132763960 132764259 -9507185 + AluSp SINE Alu 1 302 -11 4507 309 18 31 chr9 132764300 132765496 -9505948 - LTR19A-int LTR ERV1 0 7719 6509 2081 121 0 3 chr9 132765496 132765801 -9505643 - AluSx SINE Alu -8 304 1 4507 309 18 31 chr9 132765801 132766376 -9505068 - LTR19A-int LTR ERV1 -1210 6509 5928 2288 92 3 0 chr9 132766376 132766679 -9504765 - AluSg SINE Alu -4 306 3 4507 309 18 31 chr9 132766679 132767353 -9504091 - LTR19A-int LTR ERV1 -1791 5928 5206 1110 119 9 10 chr9 132767357 132767598 -9503846 + AluSq SINE Alu 1 276 -37 294 29 0 0 chr9 132767614 132767649 -9503795 + (TG)n Simple_repeat Simple_repeat 2 36 0 237 65 0 0 chr9 132767659 132767690 -9503754 + (CA)n Simple_repeat Simple_repeat 2 32 0 1365 87 0 39 chr9 132767754 132767961 -9503483 + AluSg/x SINE Alu 101 299 -11 6555 300 10 19 chr9 132767961 132768769 -9502675 - LTR19A-int LTR ERV1 -3085 4634 3820 2436 66 3 0 chr9 132768769 132769073 -9502371 - AluSp SINE Alu -8 305 1 6555 300 10 19 chr9 132769073 132769844 -9501600 - LTR19A-int LTR ERV1 -3899 3820 3078 2418 70 0 0 chr9 132769844 132770143 -9501301 - AluY SINE Alu -12 299 1 6555 300 10 19 chr9 132770143 132770800 -9500644 - LTR19A-int LTR ERV1 -4641 3078 2417 1494 273 53 27 chr9 132770799 132771698 -9499746 - LTR19A-int LTR ERV1 -4623 963 2 * 333 217 54 62 chr9 132771708 132771859 -9499585 - LTR19A LTR ERV1 -10 570 342 2363 79 0 7 chr9 132771863 132772167 -9499277 - AluSq SINE Alu -11 302 1 208 176 20 39 chr9 132772466 132772517 -9498927 + MIR SINE MIR 103 152 -110 240 205 0 41 chr9 132773185 132773281 -9498163 - L2 LINE L2 -264 3008 2920 237 171 13 26 chr9 132773448 132773524 -9497920 + C-rich Low_complexity Low_complexity 2 76 0 182 253 137 21 chr9 132774102 132774197 -9497247 + MIR3 SINE MIR 61 166 -42 275 300 123 4 chr9 132774339 132774504 -9496940 - MIR SINE MIR -57 151 14 220 311 172 8 chr9 132774602 132774724 -9496720 - MIR SINE MIR -108 154 13 328 313 106 24 chr9 132774745 132774817 -9496627 - MIR SINE MIR -20 242 177 4068 71 22 18 chr9 132774817 132774936 -9496508 - MER41A LTR ERV1 0 554 437 2263 105 0 3 chr9 132774936 132775242 -9496202 + AluSc SINE Alu 1 305 -4 4068 71 22 18 chr9 132775242 132775253 -9496191 - MER41A LTR ERV1 -117 437 428 2209 100 0 0 chr9 132775253 132775542 -9495902 + AluSx SINE Alu 1 289 -23 4068 71 22 18 chr9 132775542 132775962 -9495482 - MER41A LTR ERV1 -126 428 1 328 313 106 24 chr9 132775962 132776016 -9495428 - MIR SINE MIR -85 177 129 2085 104 3 13 chr9 132776016 132776152 -9495292 + AluSx SINE Alu 1 137 -175 2184 113 0 0 chr9 132776152 132776454 -9494990 + AluSx SINE Alu 1 302 -10 2085 104 3 13 chr9 132776454 132776616 -9494828 + AluSx SINE Alu 137 296 -16 328 313 106 24 chr9 132776616 132776696 -9494748 - MIR SINE MIR -133 129 18 340 278 123 14 chr9 132777300 132777512 -9493932 - L2 LINE L2 -262 3051 2817 1144 102 25 0 chr9 132777835 132777992 -9493452 - AluSg/x SINE Alu -15 295 135 2033 112 0 17 chr9 132778295 132778589 -9492855 - AluSx SINE Alu -17 295 7 401 230 14 37 chr9 132778622 132778925 -9492519 + GA-rich Low_complexity Low_complexity 1 295 0 306 177 62 9 chr9 132778966 132779079 -9492365 + GA-rich Low_complexity Low_complexity 1 119 0 571 205 270 25 chr9 132779379 132779579 -9491865 + MIR SINE MIR 14 262 0 629 165 8 50 chr9 132779859 132779980 -9491464 - FLAM_C SINE Alu -16 127 12 288 221 232 11 chr9 132780619 132780714 -9490730 + MIR SINE MIR 49 164 -98 303 366 73 24 chr9 132780926 132781131 -9490313 + L1MC4a LINE L1 5851 6065 -1743 2362 70 0 3 chr9 132781208 132781509 -9489935 - AluY SINE Alu -10 301 2 212 217 75 85 chr9 132781658 132781764 -9489680 - L2 LINE L2 -1 3271 3167 1997 94 45 11 chr9 132782105 132782392 -9489052 - AluSc SINE Alu -10 299 3 373 343 50 20 chr9 132782447 132782645 -9488799 - MIR SINE MIR -1 261 58 2115 105 0 7 chr9 132782676 132782980 -9488464 + AluSx SINE Alu 4 305 -7 363 339 63 29 chr9 132782990 132783164 -9488280 - MIR SINE MIR -15 247 68 502 324 132 0 chr9 132783198 132783411 -9488033 + MIR SINE MIR 21 261 -1 2251 85 7 0 chr9 132784265 132784571 -9486873 - AluSx SINE Alu -4 308 1 186 43 0 0 chr9 132786326 132786349 -9485095 + (TCCCC)n Simple_repeat Simple_repeat 4 26 0 601 121 0 0 chr9 132786349 132786432 -9485012 - AluSg/x SINE Alu -17 295 213 1155 127 0 0 chr9 132786438 132786596 -9484848 - AluSq SINE Alu -155 158 1 233 254 0 17 chr9 132786597 132786656 -9484788 + MIR SINE MIR 116 173 -89 1794 162 13 3 chr9 132787143 132787451 -9483993 + AluJo SINE Alu 2 312 0 21 36 0 0 chr9 132788428 132788456 -9482988 + GC_rich Low_complexity Low_complexity 1 28 0 290 164 0 16 chr9 132788923 132788984 -9482460 + C-rich Low_complexity Low_complexity 5 64 0 1848 119 0 70 chr9 132789232 132789544 -9481900 - AluY SINE Alu -21 290 1 206 239 11 0 chr9 132789622 132789714 -9481730 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 234 299 7 29 chr9 132789748 132789885 -9481559 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 27 0 0 0 chr9 132790570 132790597 -9480847 + GC_rich Low_complexity Low_complexity 1 27 0 446 264 16 16 chr9 132791163 132791284 -9480160 + MIR SINE MIR 110 230 -32 490 281 0 39 chr9 132791349 132791477 -9479967 + MIR SINE MIR 43 165 -97 297 239 35 61 chr9 132791637 132791762 -9479682 - MER5A DNA MER1_type -7 171 61 1782 140 7 38 chr9 132791793 132792085 -9479359 - AluJo SINE Alu -29 283 1 2182 110 0 0 chr9 132792627 132792928 -9478516 + AluSx SINE Alu 2 302 -10 345 172 0 0 chr9 132792929 132792993 -9478451 - L1MC4a LINE L1 -1110 6698 6635 901 135 0 0 chr9 132793129 132793262 -9478182 + FRAM SINE Alu 21 153 -23 2363 81 0 0 chr9 132793275 132793585 -9477859 + AluSg SINE Alu 1 310 0 210 322 67 11 chr9 132794861 132794951 -9476493 - L2 LINE L2 -47 3266 3172 228 287 11 43 chr9 132796508 132796602 -9474842 - MIR SINE MIR -80 182 92 1869 118 59 3 chr9 132799571 132799880 -9471564 - AluSx SINE Alu 0 312 1 741 284 55 26 chr9 132800748 132801019 -9470425 - MLT1C LTR MaLR -12 455 177 475 90 0 21 chr9 132801028 132801261 -9470183 - AluSc SINE Alu 0 309 1 490 251 35 18 chr9 132801267 132801438 -9470006 - MLT1C LTR MaLR -288 179 6 321 200 263 0 chr9 132801447 132801542 -9469902 + MIR3 SINE MIR 86 205 -3 374 319 102 0 chr9 132801631 132801788 -9469656 - MIR SINE MIR -13 249 77 302 242 45 0 chr9 132802295 132802427 -9469017 + L1M LINE L1 5265 5402 -778 243 88 0 0 chr9 132802538 132802572 -9468872 + (TG)n Simple_repeat Simple_repeat 1 34 0 401 255 57 0 chr9 132802603 132802709 -9468735 + HAL1b LINE L1 1233 1344 -4 689 123 54 0 chr9 132803230 132803562 -9467882 + (CA)n Simple_repeat Simple_repeat 1 350 0 247 166 46 34 chr9 132803580 132803755 -9467689 + (CA)n Simple_repeat Simple_repeat 1 177 0 217 339 0 23 chr9 132804098 132804198 -9467246 + C-rich Low_complexity Low_complexity 1 168 0 189 344 44 0 chr9 132804892 132804982 -9466462 + MIR3 SINE MIR 109 202 -6 346 268 141 50 chr9 132806070 132806268 -9465176 - MIR SINE MIR -8 254 39 225 310 14 0 chr9 132806313 132806384 -9465060 - L2 LINE L2 -6 3307 3236 936 119 0 0 chr9 132807207 132807333 -9464111 - FLAM_C SINE Alu -17 126 1 2223 94 0 0 chr9 132807455 132807743 -9463701 + AluSx SINE Alu 1 288 -24 1380 54 0 0 chr9 132807752 132807920 -9463524 + AluY SINE Alu 136 303 -8 302 248 26 120 chr9 132807927 132808044 -9463400 - L1MC4 LINE L1 -1339 6703 6598 2096 135 0 22 chr9 132808230 132808548 -9462896 + AluJo SINE Alu 1 311 -1 2183 134 0 0 chr9 132808567 132808873 -9462571 + AluSx SINE Alu 1 306 -6 211 234 13 7 chr9 132809137 132809215 -9462229 - MIR SINE MIR -126 82 3 221 254 36 0 chr9 132810562 132810617 -9460827 + MIR SINE MIR 95 151 -57 203 333 31 10 chr9 132811228 132811324 -9460120 - L2 LINE L2 -49 3223 3126 * 351 272 40 40 chr9 132811314 132811439 -9460005 - MIR SINE MIR -65 143 19 442 351 33 38 chr9 132811474 132811685 -9459759 - MIR SINE MIR -4 258 49 207 69 0 0 chr9 132811866 132811895 -9459549 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 189 256 67 33 chr9 132812041 132812131 -9459313 + MIR SINE MIR 158 250 -12 2433 74 0 0 chr9 132812751 132813062 -9458382 + AluY SINE Alu 1 311 0 322 354 51 57 chr9 132813067 132813122 -9458322 + L1ME LINE L1 5277 5331 -847 1590 143 154 0 chr9 132813122 132813381 -9458063 + AluSx SINE Alu 1 299 -3 322 354 51 57 chr9 132813381 132813500 -9457944 + L1ME LINE L1 5331 5450 -728 372 209 22 0 chr9 132813549 132813640 -9457804 + L1ME LINE L1 5534 5626 -495 1018 109 7 0 chr9 132813648 132813795 -9457649 - AluSc SINE Alu -7 302 155 2210 77 0 33 chr9 132813898 132814197 -9457247 + AluSq SINE Alu 1 289 -24 36 23 0 0 chr9 132814197 132814240 -9457204 + AT_rich Low_complexity Low_complexity 1 43 0 2235 90 10 0 chr9 132814702 132814992 -9456452 + AluSq SINE Alu 1 293 -20 250 260 14 14 chr9 132815150 132815223 -9456221 - MIR3 SINE MIR -31 177 105 292 289 12 12 chr9 132815233 132815316 -9456128 - MIR3 SINE MIR -24 184 102 219 299 165 0 chr9 132815432 132815529 -9455915 + MIR SINE MIR 32 144 -118 1634 160 29 4 chr9 132815531 132815806 -9455638 + AluJb SINE Alu 1 282 -30 709 27 0 73 chr9 132815808 132815940 -9455504 - SVA Other Other 0 1386 1285 273 119 0 0 chr9 132815953 132815995 -9455449 + (A)n Simple_repeat Simple_repeat 1 42 0 231 314 93 0 chr9 132815996 132816082 -9455362 + MIR SINE MIR 169 262 0 2298 73 0 3 chr9 132816097 132816420 -9455024 + AluSq SINE Alu 1 322 0 488 303 29 25 chr9 132816440 132816629 -9454815 + MIR SINE MIR 4 190 -18 331 212 118 0 chr9 132817358 132817443 -9454001 - L1ME4a LINE L1 -4 6117 6023 2267 106 0 3 chr9 132817484 132817785 -9453659 - AluSp SINE Alu -13 300 1 2154 113 0 22 chr9 132817836 132818198 -9453246 - AluSx SINE Alu 0 355 1 999 48 64 0 chr9 132818473 132818598 -9452846 + AluSq/x SINE Alu 1 133 -180 2148 97 27 3 chr9 132818601 132818900 -9452544 + AluSx SINE Alu 1 306 -6 1984 232 107 3 chr9 132818903 132819472 -9451972 + MLT1E1 LTR MaLR 27 654 0 2104 107 0 31 chr9 132819505 132819822 -9451622 + AluSx SINE Alu 6 312 0 229 339 31 54 chr9 132819962 132820092 -9451352 + L2 LINE L2 2653 2779 -535 2218 108 3 0 chr9 132820156 132820453 -9450991 - AluSq SINE Alu -15 298 1 1753 126 68 3 chr9 132820600 132820893 -9450551 - AluJb SINE Alu 0 312 1 257 266 35 18 chr9 132821203 132821316 -9450128 + L1ME4a LINE L1 5933 6047 -74 268 283 101 10 chr9 132821383 132821482 -9449962 + L1ME LINE L1 5548 5655 -466 2080 146 0 3 chr9 132821484 132821793 -9449651 + AluJo SINE Alu 5 312 0 327 184 56 16 chr9 132821795 132821920 -9449524 + GA-rich Low_complexity Low_complexity 3 132 0 2544 140 45 45 chr9 132821942 132822427 -9449017 + MER66B LTR ERV1 1 485 -1 355 272 136 47 chr9 132823000 132823235 -9448209 - L2 LINE L2 -453 2861 2606 2058 97 0 7 chr9 132823433 132823722 -9447722 - AluSg SINE Alu -23 287 1 847 149 0 35 chr9 132823722 132823863 -9447581 - AluSq/x SINE Alu -176 136 1 849 190 7 0 chr9 132824913 132825055 -9446389 + FRAM SINE Alu 1 140 -36 2232 78 20 3 chr9 132825091 132825386 -9446058 + AluSx SINE Alu 1 300 -12 351 212 5 69 chr9 132825933 132826122 -9445322 + (CACCC)n Simple_repeat Simple_repeat 4 180 0 190 206 16 43 chr9 132826139 132826323 -9445121 + C-rich Low_complexity Low_complexity 2 180 0 2155 91 0 14 chr9 132826952 132827262 -9444182 + AluSx SINE Alu 1 306 0 273 336 92 8 chr9 132827430 132827487 -9443957 + MIR SINE MIR 118 169 -93 1700 148 18 14 chr9 132827487 132827771 -9443673 - AluJb SINE Alu -12 300 16 273 336 92 8 chr9 132827771 132827832 -9443612 + MIR SINE MIR 169 246 -16 432 0 0 0 chr9 132828559 132828607 -9442837 + (CA)n Simple_repeat Simple_repeat 2 49 0 236 337 63 69 chr9 132828937 132829001 -9442443 + MER5B DNA MER1_type 1 64 -114 2072 120 10 0 chr9 132829001 132829293 -9442151 + AluSx SINE Alu 1 295 -17 236 337 63 69 chr9 132829293 132829403 -9442041 + MER5B DNA MER1_type 64 174 -4 234 128 0 0 chr9 132829566 132829605 -9441839 + (CA)n Simple_repeat Simple_repeat 2 40 0 276 312 138 0 chr9 132830353 132830462 -9440982 - MIR SINE MIR -127 135 12 402 294 91 20 chr9 132831288 132831485 -9439959 - L2 LINE L2 -276 3037 2827 2152 104 3 0 chr9 132831785 132832083 -9439361 + AluSq SINE Alu 14 312 -1 2044 121 3 37 chr9 132832184 132832506 -9438938 + AluSx SINE Alu 1 311 -1 2022 77 0 4 chr9 132832776 132833035 -9438409 + AluSc SINE Alu 37 294 -15 636 185 0 0 chr9 132833828 132833947 -9437497 - L1MB5 LINE L1 -272 5902 5784 2247 105 6 6 chr9 132833954 132834267 -9437177 - AluSq SINE Alu 0 313 1 1379 149 111 42 chr9 132834269 132834557 -9436887 - AluJo SINE Alu -4 308 1 759 305 74 14 chr9 132835580 132835717 -9435727 - L2 LINE L2 -1 3312 3185 2013 97 3 45 chr9 132835717 132835863 -9435581 + AluSx SINE Alu 1 129 -183 2204 113 0 0 chr9 132835863 132836341 -9435103 + AluSx SINE Alu 1 312 0 2013 97 3 45 chr9 132836341 132836503 -9434941 + AluSx SINE Alu 129 296 -16 759 305 74 14 chr9 132836503 132836884 -9434560 - L2 LINE L2 -128 3185 2768 2120 112 27 0 chr9 132837784 132838078 -9433366 - AluSx SINE Alu -10 302 1 2299 65 3 26 chr9 132838082 132838390 -9433054 - AluY SINE Alu -10 301 1 203 298 199 14 chr9 132839365 132839506 -9431938 - MIR SINE MIR -19 243 77 1645 121 0 55 chr9 132840683 132840956 -9430488 - AluJo SINE Alu -54 258 1 1522 165 20 0 chr9 132842076 132842325 -9429119 - AluJo SINE Alu -58 254 1 1196 205 0 0 chr9 132844096 132844301 -9427143 - AluJo SINE Alu -107 205 1 848 156 0 0 chr9 132844545 132844673 -9426771 - FLAM_A SINE Alu -5 128 1 853 157 0 0 chr9 132844968 132845102 -9426342 + AluJb SINE Alu 168 301 -11 713 157 0 0 chr9 132845356 132845464 -9425980 + FLAM_C SINE Alu 22 129 -14 246 303 193 0 chr9 132845793 132845902 -9425542 + L2 LINE L2 3181 3310 -3 547 277 80 21 chr9 132846837 132847025 -9424419 + MIR SINE MIR 34 232 -30 186 213 16 82 chr9 132846998 132847059 -9424385 + L2 LINE L2 3210 3266 -6 * 287 306 104 0 chr9 132847781 132847915 -9423529 - MIR SINE MIR -20 242 95 2219 99 0 3 chr9 132848458 132848760 -9422684 - AluSx SINE Alu -11 301 1 795 144 0 0 chr9 132848787 132848905 -9422539 - FLAM_C SINE Alu -14 119 2 217 342 50 68 chr9 132849343 132849504 -9421940 + MIR SINE MIR 104 261 -1 1961 137 7 0 chr9 132849562 132849862 -9421582 + AluSq SINE Alu 1 302 -11 209 229 46 15 chr9 132850372 132850503 -9420941 + (CA)n Simple_repeat Simple_repeat 1 135 0 278 293 24 13 chr9 132851382 132851476 -9419968 - MIR SINE MIR -76 132 39 1492 213 24 40 chr9 132851851 132852003 -9419441 + MLT1A1 LTR MaLR 1 154 -211 2252 107 3 0 chr9 132852003 132852313 -9419131 + AluSx SINE Alu 1 311 -1 1492 213 24 40 chr9 132852313 132852531 -9418913 + MLT1A1 LTR MaLR 154 365 0 411 0 51 0 chr9 132852918 132852977 -9418467 + (CA)n Simple_repeat Simple_repeat 2 63 0 216 309 29 0 chr9 132853786 132853854 -9417590 - L2 LINE L2 -60 3212 3143 357 290 85 40 chr9 132853863 132854039 -9417405 - MIR SINE MIR 0 262 79 647 244 24 0 chr9 132854255 132854419 -9417025 + MER45A DNA AcHobo 3 170 -8 2127 116 3 25 chr9 132854710 132855028 -9416416 - AluSx SINE Alu -1 311 1 206 207 0 52 chr9 132855736 132855794 -9415650 + G-rich Low_complexity Low_complexity 6 60 0 30 59 0 0 chr9 132856203 132856254 -9415190 + GC_rich Low_complexity Low_complexity 1 51 0 248 121 33 44 chr9 132857718 132857809 -9413635 + GA-rich Low_complexity Low_complexity 5 94 0 2200 115 3 6 chr9 132858679 132858992 -9412452 + AluSx SINE Alu 1 312 0 1367 129 0 0 chr9 132859050 132859243 -9412201 + AluSg SINE Alu 1 193 -117 186 43 0 0 chr9 132859244 132859267 -9412177 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr9 132859342 132859364 -9412080 + AT_rich Low_complexity Low_complexity 1 22 0 2387 208 59 25 chr9 132860006 132860557 -9410887 - L1MB3 LINE L1 -2 6181 5607 2118 120 10 0 chr9 132860557 132860858 -9410586 - AluSx SINE Alu -8 304 1 2387 208 59 25 chr9 132860858 132860903 -9410541 - L1MB3 LINE L1 -576 5607 5565 241 356 44 6 chr9 132861118 132861278 -9410166 + MIR3 SINE MIR 35 200 -8 238 340 57 0 chr9 132861936 132862042 -9409402 - MIR3 SINE MIR -86 122 11 387 0 0 0 chr9 132863065 132863108 -9408336 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 1977 145 0 25 chr9 132863349 132863666 -9407778 + AluJo SINE Alu 1 309 -3 279 54 0 0 chr9 132863835 132863872 -9407572 + (CA)n Simple_repeat Simple_repeat 1 37 0 310 372 62 0 chr9 132864888 132865017 -9406427 + MIR3 SINE MIR 19 155 -53 292 320 88 14 chr9 132865037 132865184 -9406260 + MER5A DNA MER1_type 14 171 -18 201 351 11 32 chr9 132865453 132865547 -9405897 - L2 LINE L2 -10 3262 3171 271 344 128 17 chr9 132866424 132866604 -9404840 + MIR SINE MIR 15 214 -48 341 168 0 7 chr9 132866650 132866728 -9404716 - MIR SINE MIR -69 139 63 415 324 35 12 chr9 132867382 132867552 -9403892 - MIR SINE MIR -25 237 64 2322 109 0 0 chr9 132868133 132868445 -9402999 - AluSx SINE Alu 0 312 1 566 308 196 3 chr9 132868518 132868839 -9402605 - L2 LINE L2 -1 3271 2889 521 278 162 0 chr9 132869588 132869761 -9401683 - MIR SINE MIR -12 250 50 439 270 53 12 chr9 132870096 132870292 -9401152 + MIR SINE MIR 52 248 -14 2325 97 3 0 chr9 132870304 132870612 -9400832 + AluSx SINE Alu 4 312 0 203 222 202 20 chr9 132870695 132870794 -9400650 - MIR3 SINE MIR -47 161 45 2317 98 0 0 chr9 132871419 132871716 -9399728 + AluSx SINE Alu 1 297 -15 351 291 75 15 chr9 132872349 132872483 -9398961 + MIR SINE MIR 89 230 -32 2080 108 7 10 chr9 132873004 132873299 -9398145 + AluSx SINE Alu 1 294 -18 2520 49 0 0 chr9 132873635 132873941 -9397503 + AluY SINE Alu 1 306 -5 338 257 73 15 chr9 132874431 132874567 -9396877 - MLT1K LTR MaLR -48 540 397 604 101 29 7 chr9 132874576 132874715 -9396729 + (CA)n Simple_repeat Simple_repeat 2 143 0 307 190 48 25 chr9 132874749 132874845 -9396599 - MLT1K LTR MaLR -357 231 147 445 284 90 3 chr9 132874960 132875115 -9396329 - MIR SINE MIR -37 225 50 1539 148 102 18 chr9 132875540 132875824 -9395620 - AluJo SINE Alu -4 308 1 475 326 115 26 chr9 132875961 132876451 -9394993 - L2 LINE L2 0 3272 2718 1584 150 51 0 chr9 132876531 132876804 -9394640 - AluJo SINE Alu -15 297 11 656 176 0 8 chr9 132877310 132877429 -9394015 + FLAM_C SINE Alu 24 141 -2 247 220 0 0 chr9 132877761 132877811 -9393633 + L2 LINE L2 3223 3272 0 239 354 52 12 chr9 132877909 132878079 -9393365 + MIR SINE MIR 15 192 -68 952 134 0 0 chr9 132878108 132878242 -9393202 - AluJb SINE Alu -45 267 134 1787 149 3 13 chr9 132878243 132878544 -9392900 - AluJo SINE Alu -14 298 1 207 354 13 13 chr9 132879032 132879111 -9392333 + MIR SINE MIR 71 149 -59 318 301 146 8 chr9 132879401 132879524 -9391920 + MIR SINE MIR 35 174 -88 478 211 10 141 chr9 132879799 132879922 -9391522 + MER5B DNA MER1_type 2 91 -87 2236 101 0 3 chr9 132879922 132880230 -9391214 - AluSc SINE Alu -2 307 1 478 211 10 141 chr9 132880230 132880305 -9391139 + MER5B DNA MER1_type 91 174 -4 2377 79 0 3 chr9 132880682 132880985 -9390459 - AluSg SINE Alu -8 302 1 1710 211 29 7 chr9 132881118 132881224 -9390220 - MER63B DNA MER1_type -627 435 333 1783 127 17 40 chr9 132881224 132881523 -9389921 + AluSx SINE Alu 3 294 -18 1710 211 29 7 chr9 132881523 132881828 -9389616 - MER63B DNA MER1_type -729 333 15 1251 139 17 67 chr9 132881838 132882076 -9389368 - AluJb SINE Alu 0 312 87 204 40 0 0 chr9 132882109 132882134 -9389310 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1915 140 0 20 chr9 132882136 132882429 -9389015 - AluSx SINE Alu -25 287 1 5662 143 28 2 chr9 132882429 132883427 -9388017 - L1MC1 LINE L1 -8 6325 5302 2367 81 0 13 chr9 132883491 132883798 -9387646 + AluSq SINE Alu 1 303 -10 265 250 42 0 chr9 132884220 132884316 -9387128 - MER117 DNA MER1_type -97 100 1 1696 136 7 71 chr9 132884356 132884664 -9386780 - AluSx SINE Alu -24 288 1 370 293 128 32 chr9 132884787 132884975 -9386469 + MIR SINE MIR 28 233 -29 1946 133 0 3 chr9 132886472 132886766 -9384678 + AluJb SINE Alu 1 293 -19 26 30 0 0 chr9 132886769 132886802 -9384642 + AT_rich Low_complexity Low_complexity 1 33 0 473 254 12 61 chr9 132887077 132887242 -9384202 + MIR SINE MIR 23 179 -83 25 51 0 0 chr9 132887562 132887601 -9383843 + GC_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr9 132887741 132887777 -9383667 + GC_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr9 132888432 132888459 -9382985 + GC_rich Low_complexity Low_complexity 1 27 0 314 287 56 0 chr9 132888915 132889023 -9382421 - MIR SINE MIR -118 144 31 2019 127 0 3 chr9 132889320 132889611 -9381833 + AluSx SINE Alu 1 290 -22 297 0 0 0 chr9 132889619 132889652 -9381792 + (TG)n Simple_repeat Simple_repeat 2 34 0 203 191 24 0 chr9 132889794 132889836 -9381608 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 266 330 0 21 chr9 132890141 132890238 -9381206 - MIR SINE MIR -136 126 32 1013 222 60 20 chr9 132890247 132890495 -9380949 - MIR SINE MIR -2 260 3 1943 93 48 10 chr9 132890504 132890793 -9380651 - AluSx SINE Alu -1 311 12 1824 166 0 3 chr9 132890802 132891098 -9380346 - AluJb SINE Alu -17 295 1 333 349 92 15 chr9 132891209 132891404 -9380040 + L1ME4a LINE L1 5656 5865 -256 199 317 17 0 chr9 132891519 132891579 -9379865 - MIR SINE MIR -4 258 198 557 238 41 0 chr9 132891679 132891801 -9379643 + MER91C DNA MER1_type 14 140 0 2043 94 7 7 chr9 132891997 132892283 -9379161 + AluSx SINE Alu 1 286 -26 2487 44 0 3 chr9 132892295 132892592 -9378852 + AluY SINE Alu 2 297 -14 889 219 0 25 chr9 132892597 132892798 -9378646 + MER3 DNA MER1_type 14 209 0 227 349 86 26 chr9 132893085 132893237 -9378207 + L3 LINE CR1 1238 1398 -179 313 323 62 0 chr9 132893656 132893786 -9377658 + MIR SINE MIR 30 167 -95 213 271 47 75 chr9 132894487 132894594 -9376850 - MIR SINE MIR -78 184 81 494 237 26 0 chr9 132894799 132894913 -9376531 + MIR3 SINE MIR 71 187 -21 1764 80 0 0 chr9 132895579 132895804 -9375640 - AluSx SINE Alu -59 253 29 658 83 0 0 chr9 132895985 132896069 -9375375 + AluS SINE Alu 1 84 -229 3859 154 26 76 chr9 132896285 132896355 -9375089 - L1MB8 LINE L1 -1 6177 6105 1637 159 32 38 chr9 132896355 132896492 -9374952 + AluJo SINE Alu 1 137 -175 1970 101 65 0 chr9 132896492 132896770 -9374674 + AluSx SINE Alu 3 298 -14 1637 159 32 38 chr9 132896770 132896946 -9374498 + AluJo SINE Alu 137 312 0 3859 154 26 76 chr9 132896946 132897165 -9374279 - L1MB8 LINE L1 -73 6105 5876 2161 102 0 10 chr9 132897165 132897482 -9373962 + AluSq SINE Alu 1 313 0 3859 154 26 76 chr9 132897482 132897695 -9373749 - L1MB8 LINE L1 -302 5876 5654 2230 86 0 17 chr9 132897695 132897997 -9373447 + AluSx SINE Alu 1 297 -15 3859 154 26 76 chr9 132897997 132898251 -9373193 - L1MB8 LINE L1 -524 5654 5389 1965 108 4 7 chr9 132898251 132898529 -9372915 - AluSx SINE Alu -35 277 1 3859 154 26 76 chr9 132898529 132898915 -9372529 - L1MB8 LINE L1 -789 5389 5092 570 296 56 96 chr9 132899013 132899388 -9372056 - L2 LINE L2 -2 3270 2911 327 303 184 21 chr9 132900106 132900340 -9371104 - L2 LINE L2 -7 3265 2994 2304 86 0 3 chr9 132900644 132900945 -9370499 + AluSc SINE Alu 1 300 -9 595 277 54 0 chr9 132901373 132901557 -9369887 + MIR SINE MIR 2 195 -67 294 267 112 81 chr9 132901549 132901587 -9369857 - MIR SINE MIR -95 167 132 * 2283 105 0 10 chr9 132901587 132901901 -9369543 - AluSx SINE Alu -1 311 1 294 267 112 81 chr9 132901901 132902023 -9369421 - MIR SINE MIR -130 132 2 214 171 0 0 chr9 132903484 132903525 -9367919 - MIR SINE MIR -10 252 212 2287 106 3 0 chr9 132903809 132904121 -9367323 - AluSq SINE Alu 0 313 1 1571 123 0 4 chr9 132904274 132904517 -9366927 + AluSg/x SINE Alu 69 310 0 206 207 0 52 chr9 132905355 132905413 -9366031 + G-rich Low_complexity Low_complexity 6 60 0 26 30 0 0 chr9 132905641 132905674 -9365770 + GC_rich Low_complexity Low_complexity 1 33 0 25 75 0 0 chr9 132905709 132905762 -9365682 + GC_rich Low_complexity Low_complexity 1 53 0 24 32 0 0 chr9 132905820 132905851 -9365593 + GC_rich Low_complexity Low_complexity 1 31 0 312 227 35 47 chr9 132905851 132906023 -9365421 + G-rich Low_complexity Low_complexity 3 172 0 212 305 66 46 chr9 132907161 132907312 -9364132 + MIR SINE MIR 28 181 -81 22 0 0 0 chr9 132907363 132907385 -9364059 + AT_rich Low_complexity Low_complexity 1 22 0 452 209 52 9 chr9 132907552 132907667 -9363777 + L2 LINE L2 3153 3272 0 670 207 29 106 chr9 132908115 132908304 -9363140 + MIR SINE MIR 22 190 -72 2105 121 0 0 chr9 132908304 132908616 -9362828 + AluSx SINE Alu 1 312 0 670 207 29 106 chr9 132908616 132908671 -9362773 + MIR SINE MIR 190 248 -14 320 293 71 56 chr9 132908986 132909192 -9362252 - MIR SINE MIR -53 209 2 2255 104 0 3 chr9 132910173 132910480 -9360964 - AluSx SINE Alu -6 306 1 323 0 48 0 chr9 132912279 132912321 -9359123 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 2153 105 0 7 chr9 132912330 132912626 -9358818 - AluSx SINE Alu -18 294 1 316 329 100 0 chr9 132913191 132913361 -9358083 - L2 LINE L2 -174 3098 2912 225 0 0 0 chr9 132913682 132913707 -9357737 + (A)n Simple_repeat Simple_repeat 1 25 0 2172 87 21 0 chr9 132913767 132914054 -9357390 + AluSx SINE Alu 1 293 -19 180 176 0 0 chr9 132914932 132914966 -9356478 + GA-rich Low_complexity Low_complexity 1 34 0 456 222 50 0 chr9 132915024 132915123 -9356321 + MIR SINE MIR 74 177 -85 1957 136 10 3 chr9 132915772 132916074 -9355370 - AluSx SINE Alu -8 304 1 2130 126 0 0 chr9 132916229 132916531 -9354913 + AluSg SINE Alu 1 302 -8 478 211 10 141 chr9 132916908 132916983 -9354461 - MER5B DNA MER1_type -4 174 91 2236 101 0 3 chr9 132916983 132917291 -9354153 + AluSc SINE Alu 1 307 -2 478 211 10 141 chr9 132917291 132917414 -9354030 - MER5B DNA MER1_type -87 91 2 905 144 0 33 chr9 132917727 132917902 -9353542 + AluSg/x SINE Alu 154 312 0 1255 280 75 21 chr9 132918029 132918166 -9353278 - L1MC4a LINE L1 -1755 6053 5925 2257 107 0 3 chr9 132918166 132918474 -9352970 + AluSx SINE Alu 1 307 -5 1255 280 75 21 chr9 132918474 132918868 -9352576 - L1MC4a LINE L1 -1883 5925 5493 219 328 0 0 chr9 132918960 132919021 -9352423 - L2 LINE L2 -3 3269 3209 387 0 0 0 chr9 132919127 132919170 -9352274 + (TG)n Simple_repeat Simple_repeat 1 43 0 953 164 111 58 chr9 132919200 132919315 -9352129 + MER20 DNA MER1_type 1 108 -111 1881 154 17 0 chr9 132919315 132919607 -9351837 - AluJo SINE Alu -15 297 1 953 164 111 58 chr9 132919607 132919699 -9351745 + MER20 DNA MER1_type 108 219 0 1695 125 110 0 chr9 132920576 132920848 -9350596 - AluJb SINE Alu -10 302 1 2911 143 40 31 chr9 132920849 132920984 -9350460 - ERVL LTR ERVL -493 5271 5139 2410 62 3 0 chr9 132920984 132921288 -9350156 + AluY SINE Alu 1 305 -6 2911 143 40 31 chr9 132921288 132921703 -9349741 - ERVL LTR ERVL -625 5139 4716 1661 157 68 3 chr9 132921707 132922000 -9349444 + AluSx SINE Alu 1 312 0 2145 123 3 3 chr9 132922003 132922304 -9349140 + AluSx SINE Alu 1 301 -11 2589 162 21 0 chr9 132922304 132922774 -9348670 - ERVL LTR ERVL -1930 3834 3355 1442 175 68 14 chr9 132922769 132923061 -9348383 - ERVL LTR ERVL -2644 3120 2813 * 1236 111 0 0 chr9 132923062 132923233 -9348211 - AluSg/x SINE Alu -11 299 129 2165 83 43 7 chr9 132923240 132923541 -9347903 - AluSx SINE Alu 0 312 1 258 75 0 0 chr9 132923562 132923602 -9347842 - ERVL LTR ERVL -2957 2807 2768 3771 156 66 1 chr9 132923609 132924307 -9347137 - ERVL LTR ERVL -3256 2508 1766 2400 65 0 0 chr9 132924307 132924599 -9346845 - AluSp SINE Alu -21 292 1 1974 138 3 3 chr9 132924599 132924894 -9346550 - AluSq SINE Alu -18 295 1 648 214 17 69 chr9 132924894 132925067 -9346377 - MER33 DNA MER1_type -160 164 1 1445 138 81 50 chr9 132925127 132925425 -9346019 + AluJo SINE Alu 1 307 -5 198 71 0 0 chr9 132925568 132925596 -9345848 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2110 117 3 3 chr9 132925694 132926002 -9345442 - AluSx SINE Alu -4 308 1 2217 97 0 0 chr9 132926012 132926302 -9345142 - AluSc SINE Alu -19 290 1 208 291 13 25 chr9 132926319 132926398 -9345046 - MIR SINE MIR -118 144 67 282 210 210 0 chr9 132926410 132926534 -9344910 + MIR SINE MIR 31 180 -82 1565 173 63 27 chr9 132927054 132927354 -9344090 + AluJb SINE Alu 1 311 -1 1148 84 6 0 chr9 132927364 132927543 -9343901 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 383 158 0 13 chr9 132927547 132927623 -9343821 + GA-rich Low_complexity Low_complexity 2 76 0 511 236 13 83 chr9 132928901 132928990 -9342454 - MIR SINE MIR -30 232 155 2051 106 0 14 chr9 132928990 132929307 -9342137 - AluSx SINE Alu 0 313 1 511 236 13 83 chr9 132929307 132929372 -9342072 - MIR SINE MIR -107 155 87 549 0 0 0 chr9 132929389 132929450 -9341994 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 324 164 0 0 chr9 132929457 132929524 -9341920 + (CCTA)n Simple_repeat Simple_repeat 1 67 0 248 246 0 18 chr9 132930627 132930684 -9340760 + CT-rich Low_complexity Low_complexity 3 58 0 180 0 0 0 chr9 132930795 132930815 -9340629 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 2311 86 0 3 chr9 132931036 132931349 -9340095 + AluSx SINE Alu 1 312 0 260 258 65 84 chr9 132931401 132931556 -9339888 + L3 LINE CR1 1310 1461 -116 1239 154 178 87 chr9 132931640 132931676 -9339768 - MLT1A1 LTR MaLR -3 362 331 1636 182 4 0 chr9 132931676 132931981 -9339463 + AluJo SINE Alu 2 307 0 1239 154 178 87 chr9 132931981 132932273 -9339171 - MLT1A1 LTR MaLR -34 331 1 504 59 0 0 chr9 132932362 132932430 -9339014 + (TATG)n Simple_repeat Simple_repeat 2 69 0 1026 99 7 0 chr9 132932430 132932572 -9338872 - AluSq SINE Alu -29 284 142 676 175 17 17 chr9 132932586 132932763 -9338681 + GA-rich Low_complexity Low_complexity 2 178 0 680 149 34 17 chr9 132932793 132932968 -9338476 + GA-rich Low_complexity Low_complexity 3 180 0 246 93 23 23 chr9 132932968 132933011 -9338433 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 1702 122 31 0 chr9 132933042 132933296 -9338148 + AluSx SINE Alu 4 265 -47 2176 122 0 0 chr9 132933525 132933828 -9337616 + AluSx SINE Alu 1 303 -9 299 211 53 61 chr9 132933842 132933956 -9337488 + L1MC4 LINE L1 7789 7901 -141 1642 180 3 7 chr9 132933967 132934261 -9337183 + AluJo SINE Alu 1 293 -19 337 215 20 121 chr9 132934266 132934415 -9337029 + L1MB7 LINE L1 6038 6171 -13 1849 151 17 0 chr9 132934452 132934744 -9336700 - AluSx SINE Alu -15 297 1 1808 145 0 60 chr9 132934765 132935097 -9336347 - AluJb SINE Alu 0 312 1 812 128 8 0 chr9 132935321 132935438 -9336006 - FRAM SINE Alu -39 137 20 454 291 8 0 chr9 132935439 132935556 -9335888 - MIR SINE MIR -98 164 47 2120 96 0 3 chr9 132935682 132935988 -9335456 + AluSx SINE Alu 3 307 0 620 14 0 0 chr9 132936097 132936170 -9335274 + AluY SINE Alu 2 74 -237 1787 142 26 7 chr9 132936335 132936637 -9334807 - AluJo SINE Alu -4 308 1 2139 132 0 0 chr9 132937089 132937393 -9334051 - AluJb SINE Alu -8 304 1 2209 104 0 3 chr9 132937614 132937922 -9333522 - AluSg SINE Alu -2 308 2 1732 154 0 0 chr9 132937947 132938213 -9333231 + AluSx SINE Alu 1 266 -46 222 37 0 0 chr9 132938213 132938240 -9333204 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 1870 169 121 5 chr9 132938340 132938462 -9332982 + ERVL-B1 LTR ERVL 5315 5421 -343 243 0 0 0 chr9 132938462 132938489 -9332955 + (TA)n Simple_repeat Simple_repeat 2 28 0 1870 169 121 5 chr9 132938489 132938763 -9332681 + ERVL-B1 LTR ERVL 5421 5757 -7 1397 215 134 15 chr9 132938763 132938942 -9332502 + MLT2B1 LTR ERVL 1 157 -363 2004 124 0 47 chr9 132938942 132939078 -9332366 + AluSx SINE Alu 1 142 -170 1808 146 3 3 chr9 132939078 132939405 -9332039 + AluSx SINE Alu 1 327 0 2004 124 0 47 chr9 132939405 132939588 -9331856 + AluSx SINE Alu 142 307 -5 1397 215 134 15 chr9 132939588 132939803 -9331641 + MLT2B1 LTR ERVL 157 442 -78 597 40 0 0 chr9 132939818 132939894 -9331550 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1593 176 3 24 chr9 132939897 132940192 -9331252 - AluJo SINE Alu -23 289 1 691 179 8 0 chr9 132940222 132940339 -9331105 + Tigger3(Golem) DNA MER2_type 3 120 -2909 801 192 84 0 chr9 132940360 132940527 -9330917 + AluJo SINE Alu 120 300 -12 1618 71 9 4 chr9 132940527 132940752 -9330692 + Tigger3b DNA MER2_type 346 571 -660 2065 110 7 0 chr9 132940753 132941054 -9330390 + AluSg SINE Alu 1 303 -7 2075 119 7 0 chr9 132941060 132941355 -9330089 + AluSx SINE Alu 3 299 -13 710 203 20 14 chr9 132941587 132941661 -9329783 + MER45A DNA AcHobo 30 102 -1479 2398 40 0 23 chr9 132941661 132941961 -9329483 - AluY SINE Alu -5 306 14 710 203 20 14 chr9 132941961 132942034 -9329410 + MER45A DNA AcHobo 102 178 0 433 296 173 4 chr9 132942141 132942319 -9329125 + L3 LINE CR1 1098 1244 -333 192 77 0 0 chr9 132942319 132942345 -9329099 + (TG)n Simple_repeat Simple_repeat 2 27 0 433 296 173 4 chr9 132942345 132942443 -9329001 + L3 LINE CR1 1244 1421 -156 284 338 162 9 chr9 132942471 132942681 -9328763 + MIR SINE MIR 9 250 -12 1085 124 12 0 chr9 132942697 132942858 -9328586 - AluSp SINE Alu -11 302 140 2163 108 0 0 chr9 132943022 132943318 -9328126 - AluSx SINE Alu -16 296 1 1067 195 3 104 chr9 132943347 132943511 -9327933 - MLT1A1 LTR MaLR -58 307 128 1733 136 36 4 chr9 132943511 132943791 -9327653 - AluSx SINE Alu -23 289 1 2274 85 0 0 chr9 132943800 132944095 -9327349 - AluY SINE Alu -12 299 5 1067 195 3 104 chr9 132944095 132944207 -9327237 - MLT1A1 LTR MaLR -245 120 50 509 297 78 0 chr9 132944453 132944663 -9326781 - MIR SINE MIR -16 246 15 332 284 102 45 chr9 132944938 132945114 -9326330 + Charlie2 DNA MER1_type 7 192 -2670 315 165 50 66 chr9 132945151 132945272 -9326172 + Charlie2 DNA MER1_type 2185 2303 -559 1779 127 3 67 chr9 132945273 132945420 -9326024 + AluSx SINE Alu 1 119 -193 2175 79 34 0 chr9 132945420 132945712 -9325732 + AluSg SINE Alu 1 302 -8 1779 127 3 67 chr9 132945712 132945879 -9325565 + AluSx SINE Alu 119 295 -17 311 262 0 3 chr9 132946112 132946191 -9325253 - L1MC/D LINE L1 -531 5639 5576 901 102 22 0 chr9 132946336 132946473 -9324971 + LTR40b LTR ERVL 323 462 0 1028 178 10 20 chr9 132946539 132946736 -9324708 + AluJb SINE Alu 105 299 -13 1147 195 72 95 chr9 132946796 132947257 -9324187 + LTR7 LTR ERV1 1 450 0 195 266 73 37 chr9 132947423 132947532 -9323912 - MIR SINE MIR -69 139 27 2102 96 0 4 chr9 132948069 132948380 -9323064 - AluSg SINE Alu 0 310 1 468 289 78 22 chr9 132948474 132948654 -9322790 - MIR SINE MIR -38 224 35 2062 73 4 4 chr9 132948744 132949016 -9322428 - AluSg SINE Alu 0 310 39 495 256 45 40 chr9 132949019 132949195 -9322249 + MIR SINE MIR 71 247 -15 493 311 13 51 chr9 132949195 132949430 -9322014 + L1ME1 LINE L1 5889 6114 -52 1310 118 0 0 chr9 132949430 132949616 -9321828 - AluSq SINE Alu -19 294 109 403 162 0 0 chr9 132949621 132949689 -9321755 + L1MA10 LINE L1 6264 6331 -3 1565 161 68 11 chr9 132949731 132950010 -9321434 + AluJb SINE Alu 1 295 -17 1032 184 12 0 chr9 132950024 132950192 -9321252 + FAM SINE Alu 1 170 -5 287 215 15 15 chr9 132950368 132950433 -9321011 - AluJ/FLAM SINE Alu -235 67 3 2304 93 0 13 chr9 132950908 132951221 -9320223 + AluSc SINE Alu 1 309 0 1996 123 28 0 chr9 132951413 132951698 -9319746 + AluSx SINE Alu 1 293 -19 2121 121 0 3 chr9 132951967 132952280 -9319164 - AluSx SINE Alu 0 312 1 1771 151 11 0 chr9 132953058 132953358 -9318086 + AluJb SINE Alu 2 304 0 290 203 81 0 chr9 132953382 132953456 -9317988 + Charlie2 DNA MER1_type 2340 2419 -443 1649 155 46 3 chr9 132953465 132953768 -9317676 - L1MB3 LINE L1 -3 6180 5865 2282 70 7 0 chr9 132953809 132954107 -9317337 + AluSp SINE Alu 1 300 -13 2146 108 14 0 chr9 132954117 132954413 -9317031 + AluSq SINE Alu 1 300 -13 350 260 40 10 chr9 132954787 132954887 -9316557 - MIR SINE MIR -129 133 31 214 318 113 46 chr9 132954932 132955171 -9316273 - L2 LINE L2 -9 3263 3009 444 240 39 31 chr9 132955492 132955621 -9315823 - L2 LINE L2 -12 3301 3172 1674 112 26 0 chr9 132956118 132956350 -9315094 - AluJo SINE Alu -18 294 57 2102 113 0 7 chr9 132956820 132957122 -9314322 - AluSx SINE Alu -12 300 1 2448 40 3 3 chr9 132957182 132957479 -9313965 + AluY SINE Alu 1 297 -14 944 219 0 25 chr9 132957484 132957685 -9313759 + MER3 DNA MER1_type 14 209 0 195 349 86 26 chr9 132957972 132958124 -9313320 + L3 LINE CR1 1238 1398 -179 291 323 62 0 chr9 132958543 132958673 -9312771 + MIR SINE MIR 30 167 -95 195 271 47 75 chr9 132959374 132959481 -9311963 - MIR SINE MIR -78 184 81 432 0 0 0 chr9 132960316 132960364 -9311080 + (CA)n Simple_repeat Simple_repeat 2 49 0 204 337 63 69 chr9 132960694 132960758 -9310686 + MER5B DNA MER1_type 1 64 -114 2038 120 10 0 chr9 132960758 132961050 -9310394 + AluSx SINE Alu 1 295 -17 204 337 63 69 chr9 132961050 132961160 -9310284 + MER5B DNA MER1_type 64 174 -4 234 128 0 0 chr9 132961323 132961362 -9310082 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 305 143 0 chr9 132962109 132962214 -9309230 - MIR SINE MIR -127 135 16 382 294 91 20 chr9 132963044 132963241 -9308203 - L2 LINE L2 -276 3037 2827 2133 104 3 0 chr9 132963541 132963839 -9307605 + AluSq SINE Alu 14 312 -1 2016 121 3 37 chr9 132963940 132964262 -9307182 + AluSx SINE Alu 1 311 -1 2001 77 0 4 chr9 132964532 132964791 -9306653 + AluSc SINE Alu 37 294 -15 230 282 48 10 chr9 132964791 132964894 -9306550 - MER113 DNA MER1_type? -412 109 3 182 289 0 0 chr9 132965703 132965755 -9305689 + MIR SINE MIR 186 237 -25 2069 123 0 0 chr9 132965759 132966051 -9305393 - AluSx SINE Alu -20 292 1 1598 152 72 17 chr9 132966208 132966498 -9304946 + AluJb SINE Alu 1 306 -6 2156 104 0 3 chr9 132966498 132966794 -9304650 + AluSq SINE Alu 1 297 -16 239 380 51 0 chr9 132966851 132966988 -9304456 + MIR3 SINE MIR 60 203 -5 2203 92 3 16 chr9 132967650 132967954 -9303490 + AluSq SINE Alu 1 300 -13 235 297 0 0 chr9 132968285 132968349 -9303095 + L2 LINE L2 3229 3292 -21 350 333 35 30 chr9 132968726 132968806 -9302638 + L1ME4a LINE L1 5733 5811 -310 1679 135 69 17 chr9 132968806 132969094 -9302350 - AluSx SINE Alu -9 303 1 350 333 35 30 chr9 132969094 132969214 -9302230 + L1ME4a LINE L1 5811 5934 -187 405 217 8 17 chr9 132969381 132969501 -9301943 + L1MC/D LINE L1 5372 5490 -2318 2395 90 0 0 chr9 132969628 132969939 -9301505 + AluSx SINE Alu 1 311 -1 216 0 0 0 chr9 132970116 132970140 -9301304 + (A)n Simple_repeat Simple_repeat 1 24 0 297 338 45 81 chr9 132970785 132971007 -9300437 - L2 LINE L2 -49 3223 3010 1100 181 57 9 chr9 132971009 132971219 -9300225 + AluJo SINE Alu 1 220 -92 231 136 0 0 chr9 132971219 132971263 -9300181 + Alu SINE Alu 85 128 -5 2002 128 7 13 chr9 132971265 132971570 -9299874 + AluJb SINE Alu 1 303 -9 430 288 137 4 chr9 132971571 132971829 -9299615 - L2 LINE L2 -254 3018 2733 185 209 23 0 chr9 132971945 132971988 -9299456 + L2 LINE L2 3210 3253 -19 1794 142 16 29 chr9 132972944 132973260 -9298184 + AluJb SINE Alu 1 312 0 1944 118 49 0 chr9 132973296 132973583 -9297861 + AluSx SINE Alu 1 301 -11 297 293 143 27 chr9 132973599 132973746 -9297698 + MIR SINE MIR 21 184 -78 535 193 63 112 chr9 132975388 132975412 -9296032 + MER110A LTR ERV1 44 68 -400 2128 178 30 74 chr9 132975412 132975939 -9295505 + MLT1D LTR MaLR 1 504 -1 535 193 63 112 chr9 132975939 132976070 -9295374 + MER110A LTR ERV1 68 187 -281 1843 162 0 7 chr9 132976070 132976360 -9295084 + AluJo SINE Alu 1 288 -24 535 193 63 112 chr9 132976360 132976426 -9295018 + MER110A LTR ERV1 187 255 -213 2180 104 4 0 chr9 132976430 132976709 -9294735 + AluSx SINE Alu 11 290 -22 2307 98 3 3 chr9 132976775 132977072 -9294372 - AluSc SINE Alu -12 297 1 319 294 85 34 chr9 132977303 132977480 -9293964 + MIR SINE MIR 33 218 -44 245 224 75 0 chr9 132977505 132977572 -9293872 + MIR SINE MIR 111 182 -80 181 233 70 0 chr9 132978377 132978420 -9293024 + MIR SINE MIR 100 145 -63 353 222 0 0 chr9 132978568 132978640 -9292804 + L1ME3 LINE L1 6037 6108 -54 2088 129 3 13 chr9 132978640 132978943 -9292501 + AluSx SINE Alu 1 300 -12 1839 105 62 69 chr9 132979087 132979393 -9292051 + AluSx SINE Alu 2 305 -7 266 247 37 12 chr9 132980129 132980210 -9291234 - L2 LINE L2 -6 3266 3184 1157 198 8 16 chr9 132980225 132980483 -9290961 - L1MB5 LINE L1 -20 6154 5899 1037 104 52 13 chr9 132980484 132980638 -9290806 + AluSg/x SINE Alu 150 309 -1 592 217 0 0 chr9 132980638 132980758 -9290686 - L1MB5 LINE L1 -281 5903 5784 2209 107 7 7 chr9 132980791 132981081 -9290363 - AluSq SINE Alu -23 290 1 1449 149 111 42 chr9 132981083 132981371 -9290073 - AluJo SINE Alu -4 308 1 356 340 78 32 chr9 132982402 132982531 -9288913 - L2 LINE L2 -8 3305 3183 2087 97 3 42 chr9 132982531 132982677 -9288767 + AluSx SINE Alu 1 130 -182 2314 113 0 0 chr9 132982677 132983155 -9288289 + AluSx SINE Alu 1 312 0 2087 97 3 42 chr9 132983155 132983316 -9288128 + AluSx SINE Alu 130 296 -16 356 340 78 32 chr9 132983316 132983530 -9287914 - L2 LINE L2 -130 3183 2946 180 0 0 0 chr9 132983661 132983681 -9287763 + (A)n Simple_repeat Simple_repeat 1 20 0 1507 153 120 14 chr9 132983692 132983967 -9287477 + AluSg SINE Alu 1 304 -6 769 61 35 0 chr9 132984081 132984195 -9287249 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 1403 73 17 0 chr9 132984195 132984374 -9287070 + AluSq SINE Alu 125 306 -7 943 206 156 18 chr9 132984801 132985077 -9286367 + MLT1D LTR MaLR 134 447 -58 189 0 0 0 chr9 132985077 132985098 -9286346 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2124 107 0 0 chr9 132985115 132985385 -9286059 - AluSx SINE Alu -42 270 1 461 226 47 0 chr9 132987052 132987158 -9284286 + MER45 DNA AcHobo 9 119 -59 870 188 10 56 chr9 132987158 132987242 -9284202 - L1MC3 LINE L1 -347 7438 7352 2038 133 3 3 chr9 132987242 132987535 -9283909 - AluSx SINE Alu -15 297 5 870 188 10 56 chr9 132987535 132987647 -9283797 - L1MC3 LINE L1 -433 7352 7251 221 244 0 0 chr9 132987974 132988019 -9283425 + (CA)n Simple_repeat Simple_repeat 2 46 0 1949 104 108 0 chr9 132988144 132988422 -9283022 - AluSg SINE Alu -2 308 1 464 289 58 6 chr9 132989222 132989395 -9282049 - MIR SINE MIR 0 262 81 894 209 6 0 chr9 132990056 132990233 -9281211 - MER45A DNA AcHobo 0 178 1 394 224 0 24 chr9 132990313 132990398 -9281046 + AluS SINE Alu 7 89 -213 2597 58 0 0 chr9 132990545 132990853 -9280591 - AluY SINE Alu -3 308 1 2464 61 7 3 chr9 132990857 132991154 -9280290 - AluSq SINE Alu -15 298 1 510 133 117 8 chr9 132991167 132991287 -9280157 - FLAM_C SINE Alu 0 133 1 29 0 0 0 chr9 132991744 132991773 -9279671 + GC_rich Low_complexity Low_complexity 1 29 0 2004 93 90 7 chr9 132992877 132993156 -9278288 + AluSx SINE Alu 1 302 -10 2519 57 0 0 chr9 132993156 132993455 -9277989 + AluY SINE Alu 1 299 -12 1704 107 122 11 chr9 132993470 132993741 -9277703 + AluSg1 SINE Alu 1 301 -8 195 263 105 74 chr9 132993744 132993839 -9277605 - MIR SINE MIR -79 129 32 1453 159 0 0 chr9 132994228 132994436 -9277008 + AluJo SINE Alu 93 300 -12 1957 137 3 29 chr9 132994902 132995208 -9276236 + AluSx SINE Alu 11 308 -4 2510 57 20 0 chr9 132995867 132996165 -9275279 + AluY SINE Alu 1 304 -7 899 211 6 0 chr9 132996184 132996355 -9275089 + FRAM SINE Alu 1 169 -7 2098 108 28 3 chr9 132996512 132996798 -9274646 + AluSx SINE Alu 1 293 -19 2375 108 0 7 chr9 132996840 132997147 -9274297 - AluSp SINE Alu -7 306 2 990 149 13 7 chr9 132998009 132998163 -9273281 - AluSg/x SINE Alu -22 290 136 2370 90 3 0 chr9 133000040 133000330 -9271114 + AluSp SINE Alu 1 291 -22 242 299 39 0 chr9 133000707 133000784 -9270660 + L3 LINE CR1 1349 1428 -149 201 221 27 121 chr9 133002666 133002815 -9268629 + (CCCA)n Simple_repeat Simple_repeat 3 137 0 205 213 64 0 chr9 133002829 133002876 -9268568 - L2 LINE L2 -100 3172 3123 211 268 56 14 chr9 133003484 133003555 -9267889 + MIR SINE MIR 183 256 -6 219 198 176 11 chr9 133003664 133003755 -9267689 - L2 LINE L2 -30 3283 3178 553 254 143 105 chr9 133004030 133004917 -9266527 + L2 LINE L2 2379 3310 -3 227 346 58 10 chr9 133005374 133005478 -9265966 + MIR SINE MIR 20 128 -80 2570 57 3 0 chr9 133005715 133006011 -9265433 + AluY SINE Alu 1 297 -14 1710 160 3 52 chr9 133006016 133006322 -9265122 + AluJo SINE Alu 1 291 -21 2102 120 20 0 chr9 133006322 133006613 -9264831 + AluSx SINE Alu 1 298 -14 290 224 248 32 chr9 133006613 133006738 -9264706 - MER5A DNA MER1_type 0 189 38 645 220 100 30 chr9 133007313 133007513 -9263931 - MIR SINE MIR -28 234 21 2012 108 3 44 chr9 133007634 133007770 -9263674 + AluSx SINE Alu 1 141 -205 2017 123 20 17 chr9 133007770 133008070 -9263374 + AluSx SINE Alu 1 301 -11 2012 108 3 44 chr9 133008070 133008291 -9263153 + AluSx SINE Alu 141 346 0 537 227 32 77 chr9 133008361 133008429 -9263015 - MIR SINE MIR 0 262 192 2181 118 14 0 chr9 133008429 133008716 -9262728 - AluSg SINE Alu -19 291 1 537 227 32 77 chr9 133008716 133008867 -9262577 - MIR SINE MIR -70 192 53 1806 154 14 14 chr9 133008900 133009192 -9262252 - AluJb SINE Alu -17 295 4 2032 133 0 41 chr9 133009316 133009632 -9261812 + AluSq SINE Alu 1 303 -10 229 376 75 8 chr9 133009748 133009881 -9261563 - MIR SINE MIR -106 156 15 2200 130 0 0 chr9 133009908 133010207 -9261237 + AluSx SINE Alu 1 299 -13 2251 118 3 0 chr9 133010280 133010586 -9260858 + AluSq SINE Alu 1 307 -6 357 90 13 51 chr9 133011787 133011865 -9259579 + (CCCCAG)n Simple_repeat Simple_repeat 1 75 0 426 127 16 40 chr9 133011957 133012083 -9259361 + (CCCCAG)n Simple_repeat Simple_repeat 1 123 0 314 23 0 23 chr9 133012157 133012201 -9259243 + (CCCCAG)n Simple_repeat Simple_repeat 2 44 0 2099 108 4 0 chr9 133012614 133012892 -9258552 + AluSx SINE Alu 2 280 -32 261 0 0 0 chr9 133012903 133012932 -9258512 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3938 137 164 118 chr9 133012935 133013235 -9258209 - L1MC3 LINE L1 -13 7772 7487 2090 80 12 0 chr9 133013235 133013485 -9257959 - AluSc SINE Alu -56 253 1 3938 137 164 118 chr9 133013485 133013755 -9257689 - L1MC3 LINE L1 -298 7487 7231 269 310 0 10 chr9 133013755 133013855 -9257589 - MLT1F1 LTR MaLR -445 122 24 3938 137 164 118 chr9 133013855 133014188 -9257256 - L1MC3 LINE L1 -554 7231 6915 2299 121 3 6 chr9 133014188 133014501 -9256943 + AluSx SINE Alu 1 312 0 3938 137 164 118 chr9 133014501 133014785 -9256659 - L1MC3 LINE L1 -870 6915 6425 180 224 122 0 chr9 133014864 133014913 -9256531 - L2 LINE L2 -5 3267 3213 273 299 63 16 chr9 133015063 133015190 -9256254 - L2 LINE L2 -6 3307 3175 342 248 120 8 chr9 133015190 133015315 -9256129 - MIR SINE MIR -115 147 9 2488 92 0 6 chr9 133016074 133016389 -9255055 - AluSp SINE Alu 0 313 1 290 288 63 9 chr9 133016593 133016704 -9254740 + L2 LINE L2 3185 3301 -12 2349 113 3 0 chr9 133016708 133017019 -9254425 - AluSx SINE Alu 0 312 1 917 195 0 35 chr9 133017025 133017194 -9254250 - AluJo SINE Alu -16 296 134 308 285 197 0 chr9 133017278 133017415 -9254029 - MIR SINE MIR -77 185 22 708 179 0 0 chr9 133018441 133018553 -9252891 - FLAM_C SINE Alu -30 113 2 622 121 40 0 chr9 133018554 133018653 -9252791 - AluJo SINE Alu -14 298 196 558 161 59 17 chr9 133018655 133018773 -9252671 - AluJo SINE Alu -169 143 21 2254 101 10 0 chr9 133018809 133019106 -9252338 - AluSg SINE Alu -10 300 1 2324 99 3 0 chr9 133019718 133020020 -9251424 - AluSp SINE Alu -10 303 1 1036 190 20 0 chr9 133020490 133020685 -9250759 + MER2 DNA MER2_type 1 199 -146 21 36 0 0 chr9 133020701 133020729 -9250715 + AT_rich Low_complexity Low_complexity 1 28 0 2206 115 0 0 chr9 133020747 133021035 -9250409 - AluSx SINE Alu -24 288 1 1050 184 0 0 chr9 133021089 133021252 -9250192 - AluJ SINE Alu -15 297 135 213 175 0 0 chr9 133021272 133021312 -9250132 + (TG)n Simple_repeat Simple_repeat 1 40 0 330 326 0 0 chr9 133021312 133021398 -9250046 + L1MC4 LINE L1 6615 6700 -1342 848 115 57 8 chr9 133021399 133021521 -9249923 - AluJ SINE Alu -179 133 6 684 291 60 58 chr9 133022262 133022743 -9248701 + L1ME4a LINE L1 5618 6099 -22 486 276 128 5 chr9 133024566 133024762 -9246682 - MIR SINE MIR -2 260 41 331 295 175 16 chr9 133025804 133025987 -9245457 - L2 LINE L2 0 3313 3102 393 354 134 33 chr9 133026280 133026339 -9245105 + L3 LINE CR1 1195 1247 -330 2459 87 0 0 chr9 133026339 133026638 -9244806 - AluSx SINE Alu -13 299 1 393 354 134 33 chr9 133026638 133026914 -9244530 + L3 LINE CR1 1247 1564 -13 574 250 29 58 chr9 133027394 133027602 -9243842 + MIR SINE MIR 4 205 -57 739 282 83 42 chr9 133028800 133029063 -9242381 - L1MC4 LINE L1 -3 8039 7788 2292 99 0 0 chr9 133029063 133029367 -9242077 - AluSq SINE Alu -9 304 1 739 282 83 42 chr9 133029367 133029393 -9242051 - L1MC4 LINE L1 -254 7788 7765 2349 164 18 3 chr9 133029393 133029777 -9241667 - MLT1B LTR MaLR 0 390 1 739 282 83 42 chr9 133029777 133029919 -9241525 - L1MC4 LINE L1 -277 7765 7589 186 311 0 16 chr9 133030225 133030286 -9241158 + MIR SINE MIR 82 141 -67 449 292 167 0 chr9 133030396 133030540 -9240904 - MIR SINE MIR -48 214 47 195 326 153 0 chr9 133030697 133030795 -9240649 + L2 LINE L2 3152 3264 -8 2250 94 0 3 chr9 133030892 133031189 -9240255 - AluSg SINE Alu -14 296 1 782 316 84 74 chr9 133031309 133031444 -9240000 + L1ME4a LINE L1 5520 5652 -469 1944 155 0 0 chr9 133031444 133031748 -9239696 + AluSx SINE Alu 1 304 -8 2049 108 3 11 chr9 133031752 133032062 -9239382 + AluSq SINE Alu 3 310 0 782 316 84 74 chr9 133032062 133032088 -9239356 + L1ME4a LINE L1 5654 5678 -443 1649 182 3 14 chr9 133032088 133032379 -9239065 + AluJb SINE Alu 11 298 -14 782 316 84 74 chr9 133032379 133032640 -9238804 + L1ME4a LINE L1 5678 5959 -162 1962 151 7 0 chr9 133032640 133032945 -9238499 + AluJb SINE Alu 1 307 -5 782 316 84 74 chr9 133032945 133033109 -9238335 + L1ME4a LINE L1 5959 6120 -1 971 142 0 0 chr9 133033197 133033338 -9238106 + AluJb SINE Alu 1 141 -171 409 132 0 55 chr9 133033721 133033812 -9237632 - LTR9 LTR ERV1 -86 526 441 786 166 55 37 chr9 133033824 133033987 -9237457 - FRAM SINE Alu 0 166 1 328 203 215 0 chr9 133034054 133034133 -9237311 - L1ME4a LINE L1 -16 6105 6010 2273 78 0 25 chr9 133034206 133034525 -9236919 - AluY SINE Alu 0 311 1 180 0 0 0 chr9 133034525 133034545 -9236899 + (TA)n Simple_repeat Simple_repeat 2 21 0 1997 141 0 7 chr9 133034545 133034844 -9236600 - AluJo SINE Alu -5 307 11 1510 212 77 4 chr9 133034860 133034919 -9236525 - L1MB3 LINE L1 -224 5940 5887 2080 128 0 10 chr9 133034919 133035223 -9236221 - AluSq SINE Alu -12 301 1 1510 212 77 4 chr9 133035223 133035587 -9235857 - L1MB3 LINE L1 -277 5887 5497 2257 103 0 0 chr9 133035595 133035896 -9235548 - AluSg SINE Alu -9 301 1 843 261 23 33 chr9 133036025 133036324 -9235120 - L1ME2 LINE L1 -9 6155 5860 2302 89 7 0 chr9 133036407 133036710 -9234734 + AluSp SINE Alu 1 305 -8 228 300 0 44 chr9 133036710 133036800 -9234644 + MIR SINE MIR 73 158 -104 1125 126 12 0 chr9 133036892 133037059 -9234385 + AluSg/x SINE Alu 129 297 -13 1755 171 0 16 chr9 133037870 133038174 -9233270 + AluJo SINE Alu 3 301 -11 401 230 109 57 chr9 133038372 133038602 -9232842 + L1MC5 LINE L1 7653 7894 -67 335 356 94 17 chr9 133038723 133038903 -9232541 + MIR SINE MIR 54 247 -15 2027 132 6 0 chr9 133039034 133039345 -9232099 - AluSp SINE Alu 0 313 1 527 172 20 0 chr9 133039538 133039637 -9231807 - L1MD2 LINE L1 -10 6349 6249 1114 138 12 0 chr9 133039650 133039817 -9231627 - FRAM SINE Alu -11 165 1 690 208 99 16 chr9 133039820 133040012 -9231432 - L1MD2 LINE L1 -110 6249 6042 416 304 165 0 chr9 133040673 133040867 -9230577 - MIR SINE MIR -24 238 13 837 297 90 18 chr9 133041537 133041938 -9229506 - L1MC4a LINE L1 -1760 6048 5619 389 316 95 32 chr9 133042348 133042842 -9228602 + L1MC4a LINE L1 5283 5859 -1949 241 296 86 56 chr9 133043377 133043539 -9227905 + MIR SINE MIR 48 214 -48 2413 76 0 0 chr9 133043541 133043842 -9227602 + AluY SINE Alu 1 301 -10 523 251 69 51 chr9 133043880 133044190 -9227254 - MLT1J LTR MaLR -157 341 6 188 298 60 24 chr9 133044254 133044338 -9227106 - L2 LINE L2 -50 3222 3136 244 346 23 67 chr9 133045042 133045293 -9226151 + MIR SINE MIR 34 260 -2 429 235 174 8 chr9 133045293 133045425 -9226019 + L1ME4a LINE L1 5968 6121 0 273 306 0 14 chr9 133046500 133046572 -9224872 + MIR SINE MIR 1 71 -191 269 273 82 9 chr9 133047143 133047253 -9224191 - L2 LINE L2 -10 3262 3145 2028 130 0 0 chr9 133047647 133047965 -9223479 - AluSx SINE Alu 0 318 1 395 289 152 53 chr9 133048022 133048144 -9223300 + L1ME4a LINE L1 5833 5942 -179 1921 139 14 0 chr9 133048144 133048431 -9223013 + AluJo SINE Alu 1 291 -21 395 289 152 53 chr9 133048431 133048442 -9223002 + L1ME4a LINE L1 5942 5951 -170 2412 71 0 0 chr9 133048442 133048738 -9222706 + AluY SINE Alu 3 298 -13 395 289 152 53 chr9 133048738 133048866 -9222578 + L1ME4a LINE L1 5951 6121 0 1256 176 180 0 chr9 133048879 133049123 -9222321 + AluJo SINE Alu 3 290 -12 385 324 88 0 chr9 133050116 133050264 -9221180 + L1ME4a LINE L1 5591 5751 -370 2237 91 0 7 chr9 133050663 133050961 -9220483 + AluSc SINE Alu 1 296 -13 1961 126 7 7 chr9 133051015 133051327 -9220117 + AluSx SINE Alu 1 312 0 428 296 90 22 chr9 133051814 133051961 -9219483 - MIR SINE MIR -40 168 37 2387 85 0 0 chr9 133052217 133052524 -9218920 + AluSc SINE Alu 1 307 -2 1970 137 10 13 chr9 133052578 133052885 -9218559 + AluJo SINE Alu 1 306 -6 2209 106 0 0 chr9 133052891 133053184 -9218260 + AluSg SINE Alu 7 299 -11 368 333 85 25 chr9 133053194 133053395 -9218049 + L1ME4a LINE L1 5905 6117 -4 438 283 101 13 chr9 133053890 133054049 -9217395 - MIR SINE MIR -31 231 59 811 182 0 65 chr9 133054050 133054220 -9217224 - AluJb SINE Alu -17 295 137 21 71 0 0 chr9 133054321 133054363 -9217081 + AT_rich Low_complexity Low_complexity 1 42 0 442 280 101 15 chr9 133054748 133054943 -9216501 - MIR SINE MIR -48 214 5 297 349 36 18 chr9 133056097 133056263 -9215181 + MIR SINE MIR 16 184 -78 186 313 47 0 chr9 133057536 133057600 -9213844 - MIR SINE MIR -117 145 79 375 379 71 5 chr9 133059134 133059332 -9212112 - L1MC/D LINE L1 -2296 5512 5302 3070 213 105 42 chr9 133059377 133060095 -9211349 - L1MB3 LINE L1 -2 6181 5510 221 0 35 0 chr9 133060095 133060124 -9211320 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2181 81 3 3 chr9 133060124 133060407 -9211037 - AluSx SINE Alu -29 283 1 3070 213 105 42 chr9 133060407 133060548 -9210896 - L1MB3 LINE L1 -673 5510 5379 2049 125 7 3 chr9 133060548 133060843 -9210601 - AluSx SINE Alu -16 296 1 3070 213 105 42 chr9 133060843 133061092 -9210352 - L1MB3 LINE L1 -804 5379 4977 631 209 61 0 chr9 133061130 133061245 -9210199 + FLAM_A SINE Alu 1 122 -11 2212 102 16 22 chr9 133061461 133061775 -9209669 - AluSx SINE Alu 0 312 1 236 288 185 15 chr9 133062450 133062655 -9208789 - L2 LINE L2 -219 3094 2855 2325 112 0 0 chr9 133064748 133065060 -9206384 + AluSx SINE Alu 1 312 0 783 146 146 36 chr9 133065191 133065383 -9206061 - MER20 DNA MER1_type -6 213 1 1953 151 0 13 chr9 133065630 133065935 -9205509 + AluJb SINE Alu 3 303 -9 977 149 6 31 chr9 133065943 133066104 -9205340 + FRAM SINE Alu 1 157 -9 2166 91 7 3 chr9 133066182 133066468 -9204976 + AluSx SINE Alu 1 287 -25 289 313 86 8 chr9 133067495 133067623 -9203821 + MIR SINE MIR 2 139 -123 2645 202 58 15 chr9 133070723 133071180 -9200264 - MER41D LTR ERV1 0 557 72 2190 115 0 0 chr9 133071180 133071475 -9199969 - AluSx SINE Alu -17 295 1 2645 202 58 15 chr9 133071475 133071547 -9199897 - MER41D LTR ERV1 -485 72 5 1957 116 0 48 chr9 133071755 133072066 -9199378 - AluSc SINE Alu -13 296 1 962 110 0 0 chr9 133072211 133072338 -9199106 - FLAM_C SINE Alu -6 127 1 2294 96 0 3 chr9 133077679 133077991 -9193453 + AluSx SINE Alu 1 311 -1 214 264 0 0 chr9 133078250 133078303 -9193141 + (TG)n Simple_repeat Simple_repeat 2 54 0 187 53 26 26 chr9 133079038 133079076 -9192368 + (GGGGA)n Simple_repeat Simple_repeat 2 39 0 2219 97 0 0 chr9 133079266 133079565 -9191879 + AluSg SINE Alu 1 299 -11 1598 170 6 22 chr9 133079569 133079881 -9191563 + AluJo SINE Alu 1 307 -5 459 0 0 0 chr9 133080758 133080809 -9190635 + (CA)n Simple_repeat Simple_repeat 2 52 0 1977 127 3 32 chr9 133081713 133082028 -9189416 + AluSx SINE Alu 1 306 -6 2171 101 7 3 chr9 133082028 133082325 -9189119 + AluSc SINE Alu 1 298 -11 237 93 56 0 chr9 133082866 133082920 -9188524 + A-rich Low_complexity Low_complexity 2 58 0 2021 94 43 7 chr9 133083169 133083468 -9187976 + AluSx SINE Alu 1 310 -2 1602 133 8 0 chr9 133084794 133085035 -9186409 - AluSq SINE Alu -32 281 39 1883 80 84 17 chr9 133085035 133085322 -9186122 - AluSx SINE Alu -6 306 1 543 144 10 10 chr9 133085824 133085921 -9185523 - MER103 DNA DNA -59 107 11 22 35 0 0 chr9 133085935 133085964 -9185480 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr9 133085980 133086003 -9185441 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 672 177 154 0 chr9 133086003 133086133 -9185311 - FRAM SINE Alu -16 150 1 2175 105 3 0 chr9 133086216 133086521 -9184923 - AluSq SINE Alu -7 306 1 2078 111 3 0 chr9 133086890 133087179 -9184265 - AluSc SINE Alu -19 290 1 2192 101 0 0 chr9 133087472 133087769 -9183675 - AluSx SINE Alu -15 297 1 1754 137 0 59 chr9 133087820 133088127 -9183317 + AluJo SINE Alu 1 289 -23 466 89 64 45 chr9 133088127 133088284 -9183160 + GA-rich Low_complexity Low_complexity 1 160 0 948 104 8 0 chr9 133089516 133089650 -9181794 + AluSq/x SINE Alu 1 135 -178 2041 125 13 0 chr9 133089650 133089953 -9181491 + AluSx SINE Alu 1 307 -5 2073 133 0 0 chr9 133090021 133090322 -9181122 + AluSx SINE Alu 1 301 -11 1282 172 67 46 chr9 133090714 133090999 -9180445 + AluJo SINE Alu 8 298 -14 1896 105 7 62 chr9 133091434 133091738 -9179706 - AluSq SINE Alu -21 292 6 37 16 0 48 chr9 133092001 133092064 -9179380 + AT_rich Low_complexity Low_complexity 1 60 0 966 121 0 0 chr9 133092081 133092222 -9179222 - AluJo SINE Alu -171 141 1 1533 102 0 0 chr9 133092239 133092455 -9178989 + AluSg/x SINE Alu 94 309 -3 221 266 94 0 chr9 133092963 133093027 -9178417 + L2 LINE L2 1397 1466 -1848 485 264 68 64 chr9 133093075 133093310 -9178134 + L2 LINE L2 3078 3313 0 41 87 0 0 chr9 133093310 133093414 -9178030 + AT_rich Low_complexity Low_complexity 1 104 0 364 224 122 28 chr9 133093485 133093592 -9177852 + L2 LINE L2 1713 1829 -1485 597 241 146 61 chr9 133093592 133093666 -9177778 - L1M4 LINE L1 -2889 3257 3191 189 0 0 0 chr9 133093666 133093687 -9177757 + (TG)n Simple_repeat Simple_repeat 2 22 0 597 241 146 61 chr9 133093687 133093716 -9177728 - L1M4 LINE L1 -2955 3191 3166 1968 123 11 0 chr9 133093716 133094000 -9177444 - AluSx SINE Alu -25 287 1 597 241 146 61 chr9 133094000 133094267 -9177177 - L1M4 LINE L1 -2980 3166 2923 2333 85 3 0 chr9 133094267 133094574 -9176870 - AluSp SINE Alu -5 308 1 597 241 146 61 chr9 133094574 133094732 -9176712 - L1M4 LINE L1 -3223 2923 2780 2451 114 25 11 chr9 133094732 133095091 -9176353 + THE1B LTR MaLR 1 364 0 597 241 146 61 chr9 133095091 133095164 -9176280 - L1M4 LINE L1 -3366 2780 2602 2192 90 0 0 chr9 133095179 133095469 -9175975 - AluSc SINE Alu -19 290 1 380 266 29 72 chr9 133095524 133095731 -9175713 - L1M4 LINE L1 -3816 2330 2133 205 306 0 16 chr9 133095731 133095793 -9175651 - MIR SINE MIR -14 248 188 340 147 0 0 chr9 133095866 133095929 -9175515 - AluJb SINE Alu -10 292 241 414 0 0 0 chr9 133095972 133096018 -9175426 + (TG)n Simple_repeat Simple_repeat 2 47 0 2316 74 3 0 chr9 133096121 133096418 -9175026 - AluY SINE Alu -13 298 1 874 132 20 13 chr9 133096438 133096590 -9174854 - AluJb SINE Alu -79 233 81 1837 140 17 20 chr9 133096596 133096896 -9174548 - AluJo SINE Alu -13 299 1 33 0 0 0 chr9 133096915 133096948 -9174496 + AT_rich Low_complexity Low_complexity 1 33 0 2022 128 0 3 chr9 133096948 133097245 -9174199 - AluSx SINE Alu -16 296 1 1714 101 151 0 chr9 133098018 133098276 -9173168 - AluSx SINE Alu -5 297 1 2242 95 0 3 chr9 133098593 133098897 -9172547 + AluSg SINE Alu 2 304 -6 231 36 0 0 chr9 133099239 133099267 -9172177 + (TG)n Simple_repeat Simple_repeat 1 28 0 742 119 0 0 chr9 133099443 133099552 -9171892 - AluSp SINE Alu -203 110 2 3818 151 97 75 chr9 133099552 133100042 -9171402 + MER21A LTR ERV1 62 579 -352 2025 123 3 13 chr9 133100042 133100352 -9171092 + AluSg SINE Alu 1 307 -3 3818 151 97 75 chr9 133100352 133100696 -9170748 + MER21A LTR ERV1 579 914 -17 2272 86 3 7 chr9 133100799 133101102 -9170342 + AluSp SINE Alu 1 302 -11 927 169 40 55 chr9 133101171 133101330 -9170114 + MER3 DNA MER1_type 8 165 -44 1952 113 41 0 chr9 133101330 133101623 -9169821 + AluSx SINE Alu 1 305 -7 927 169 40 55 chr9 133101623 133101664 -9169780 + MER3 DNA MER1_type 165 205 -4 2256 84 0 0 chr9 133101881 133102179 -9169265 + AluSx SINE Alu 1 298 -14 1511 146 94 14 chr9 133102260 133102548 -9168896 - AluJb SINE Alu -1 311 1 1009 178 0 0 chr9 133102555 133102729 -9168715 - FRAM SINE Alu -2 174 1 21 0 0 0 chr9 133103052 133103073 -9168371 + AT_rich Low_complexity Low_complexity 1 21 0 414 85 0 0 chr9 133103128 133103187 -9168257 + (TA)n Simple_repeat Simple_repeat 1 59 0 1871 126 3 3 chr9 133103770 133104056 -9167388 - AluSx SINE Alu -26 286 1 183 80 0 0 chr9 133104407 133104432 -9167012 + (GA)n Simple_repeat Simple_repeat 2 26 0 2334 84 7 0 chr9 133104728 133105037 -9166407 + AluSp SINE Alu 1 311 -2 2044 94 21 3 chr9 133105412 133105698 -9165746 - AluSg SINE Alu -19 291 1 1552 155 63 7 chr9 133105743 133106027 -9165417 - AluJb SINE Alu -12 300 1 180 125 0 0 chr9 133107257 133107289 -9164155 + (A)n Simple_repeat Simple_repeat 1 32 0 2242 93 0 0 chr9 133108703 133108992 -9162452 - AluSg SINE Alu -21 289 1 534 165 184 0 chr9 133109662 133109771 -9161673 - FLAM_A SINE Alu -4 129 1 2191 78 0 59 chr9 133109785 133110105 -9161339 - AluSx SINE Alu -11 301 1 234 139 0 0 chr9 133110496 133110532 -9160912 - Alu SINE Alu -265 36 1 561 259 193 25 chr9 133110812 133111009 -9160435 + MIR SINE MIR 27 256 -6 26 0 0 0 chr9 133111271 133111297 -9160147 + AT_rich Low_complexity Low_complexity 1 26 0 1069 211 0 31 chr9 133111328 133111555 -9159889 - AluJo SINE Alu -92 220 1 2206 105 0 0 chr9 133111691 133111997 -9159447 + AluSc SINE Alu 1 306 -3 201 174 0 22 chr9 133112354 133112400 -9159044 + G-rich Low_complexity Low_complexity 6 50 0 2347 62 0 0 chr9 133113617 133113908 -9157536 + AluY SINE Alu 1 291 -20 1071 134 6 12 chr9 133114006 133114177 -9157267 - AluSx SINE Alu -142 170 1 1107 50 0 0 chr9 133114358 133114498 -9156946 - L1P LINE L1 -3528 2618 2479 2247 99 7 0 chr9 133114605 133114909 -9156535 - AluSx SINE Alu -6 306 1 2095 127 0 0 chr9 133114988 133115287 -9156157 - AluSx SINE Alu -13 299 1 967 140 115 20 chr9 133115416 133115616 -9155828 + MER20 DNA MER1_type 1 219 0 2370 84 3 0 chr9 133115620 133115931 -9155513 + AluSx SINE Alu 1 312 0 2036 95 6 46 chr9 133116613 133116938 -9154506 - AluSq SINE Alu -1 312 1 2268 88 0 7 chr9 133117397 133117704 -9153740 + AluSx SINE Alu 6 310 -2 1669 159 10 27 chr9 133117840 133118141 -9153303 + AluJo SINE Alu 17 312 0 2219 114 0 0 chr9 133118143 133118451 -9152993 + AluSx SINE Alu 1 308 -4 1986 138 0 7 chr9 133119074 133119378 -9152066 - AluJb SINE Alu -10 302 1 1658 168 27 3 chr9 133120037 133120335 -9151109 + AluJb SINE Alu 1 305 -7 2319 62 0 10 chr9 133120337 133120627 -9150817 + AluY SINE Alu 1 287 -24 213 65 0 0 chr9 133120634 133120665 -9150779 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 963 173 11 22 chr9 133120665 133120844 -9150600 + AluJb SINE Alu 135 311 -1 424 163 35 14 chr9 133120867 133120946 -9150498 + GA-rich Low_complexity Low_complexity 1 86 -58 2217 87 0 10 chr9 133120946 133121258 -9150186 + AluSc SINE Alu 1 309 0 424 163 35 14 chr9 133121258 133121319 -9150125 + GA-rich Low_complexity Low_complexity 86 144 0 201 74 0 0 chr9 133122238 133122265 -9149179 + (CA)n Simple_repeat Simple_repeat 2 28 0 2212 82 0 33 chr9 133123593 133123897 -9147547 - AluSx SINE Alu -18 294 1 970 129 0 0 chr9 133124137 133124284 -9147160 - FRAM SINE Alu -10 166 20 216 0 0 0 chr9 133124491 133124515 -9146929 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2176 92 0 0 chr9 133124519 133124802 -9146642 - AluY SINE Alu -28 283 1 513 125 0 12 chr9 133124981 133125061 -9146383 - MADE1 DNA Mariner -1 79 1 2126 125 0 0 chr9 133125903 133126206 -9145238 + AluSx SINE Alu 1 303 -9 255 246 232 0 chr9 133126231 133126369 -9145075 + L1ME LINE L1 5616 5785 -336 2160 88 10 7 chr9 133126466 133126760 -9144684 + AluSg SINE Alu 1 295 -15 24 0 0 29 chr9 133126883 133126896 -9144548 + AT_rich Low_complexity Low_complexity 1 13 -21 1972 125 3 3 chr9 133126896 133127193 -9144251 + AluSx SINE Alu 1 297 -15 24 0 0 29 chr9 133127193 133127214 -9144230 + AT_rich Low_complexity Low_complexity 13 34 0 860 129 0 0 chr9 133128006 133128122 -9143322 - AluSp/q SINE Alu -26 287 172 2259 108 0 0 chr9 133128122 133128419 -9143025 + AluSq SINE Alu 1 297 -16 585 256 97 96 chr9 133128656 133128934 -9142510 + L1MEd LINE L1 614 890 -5315 1774 178 0 20 chr9 133128934 133129238 -9142206 + AluJo SINE Alu 1 298 -14 585 256 97 96 chr9 133129238 133129627 -9141817 + L1MEd LINE L1 890 1282 -4923 228 67 0 0 chr9 133129627 133129657 -9141787 + (TA)n Simple_repeat Simple_repeat 2 31 0 2328 72 0 4 chr9 133129657 133129934 -9141510 - AluSc SINE Alu -27 282 7 2150 110 0 0 chr9 133130122 133130424 -9141020 + AluSx SINE Alu 1 302 0 1793 173 3 10 chr9 133130485 133130780 -9140664 - AluJb SINE Alu -19 293 1 2238 120 7 0 chr9 133130804 133131113 -9140331 + AluSx SINE Alu 1 311 -1 375 229 70 28 chr9 133131117 133131302 -9140142 + L1MEd LINE L1 1566 1738 -838 291 269 54 62 chr9 133131310 133131440 -9140004 + Charlie8 DNA MER1_type 151 279 -2138 859 119 0 0 chr9 133131899 133132008 -9139436 - FLAM_C SINE Alu -34 109 1 2349 106 0 0 chr9 133132400 133132702 -9138742 - AluSq SINE Alu -11 302 1 2391 82 0 3 chr9 133132726 133133031 -9138413 + AluY SINE Alu 1 304 -7 2373 81 0 0 chr9 133133282 133133578 -9137866 + AluSc SINE Alu 1 296 -13 259 267 123 20 chr9 133133698 133133844 -9137600 - MIR SINE MIR -53 209 49 212 167 106 30 chr9 133133925 133133991 -9137453 + MIR SINE MIR 183 253 -9 2009 147 0 3 chr9 133134907 133135206 -9136238 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr9 133135215 133135237 -9136207 + AT_rich Low_complexity Low_complexity 1 22 0 2510 87 3 0 chr9 133136180 133136492 -9134952 + AluSq SINE Alu 1 313 0 2272 102 3 0 chr9 133136649 133136943 -9134501 - AluSp SINE Alu -18 295 1 24 0 0 0 chr9 133136998 133137022 -9134422 + AT_rich Low_complexity Low_complexity 1 24 0 1658 164 59 11 chr9 133137028 133137315 -9134129 + AluJo SINE Alu 1 301 -11 1167 139 0 0 chr9 133137378 133137551 -9133893 - AluSg/x SINE Alu -4 308 136 2264 117 7 0 chr9 133137553 133137862 -9133582 - AluSq SINE Alu -2 311 1 657 188 23 0 chr9 133138601 133138729 -9132715 + BC200 scRNA scRNA 1 131 -69 191 59 0 29 chr9 133138729 133138763 -9132681 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1894 144 3 20 chr9 133139819 133139982 -9131462 - AluJb SINE Alu -16 296 139 2063 112 51 7 chr9 133139982 133140278 -9131166 - AluSx SINE Alu -3 309 1 1894 144 3 20 chr9 133140278 133140413 -9131031 - AluJb SINE Alu -173 139 3 1656 193 0 11 chr9 133140440 133140766 -9130678 - AluJb SINE Alu 0 323 1 2220 128 0 0 chr9 133140931 133141237 -9130207 + AluSx SINE Alu 1 306 -6 2106 120 27 0 chr9 133141239 133141540 -9129904 + AluSx SINE Alu 1 309 -3 272 318 88 11 chr9 133141541 133141815 -9129629 + L1M4 LINE L1 2209 2503 -3643 294 348 72 0 chr9 133141843 133141981 -9129463 - MIR SINE MIR -10 252 105 579 301 51 59 chr9 133142082 133142226 -9129218 + L1M4 LINE L1 2676 2820 -3326 2035 117 3 17 chr9 133142226 133142545 -9128899 + AluSx SINE Alu 2 316 0 579 301 51 59 chr9 133142545 133142945 -9128499 + L1M4 LINE L1 2820 3216 -2930 355 226 265 10 chr9 133142945 133143047 -9128397 + FLAM_A SINE Alu 1 128 -5 579 301 51 59 chr9 133143047 133143281 -9128163 + L1M4 LINE L1 3216 3450 -2696 594 297 147 29 chr9 133143327 133143741 -9127703 + L1M4 LINE L1 3554 4065 -2081 2255 90 14 3 chr9 133143741 133144029 -9127415 + AluSq SINE Alu 6 296 -17 594 297 147 29 chr9 133144029 133144227 -9127217 + L1M4 LINE L1 4065 4238 -1908 1628 181 4 11 chr9 133144263 133144544 -9126900 - AluJb SINE Alu -20 292 14 27 0 0 0 chr9 133144557 133144584 -9126860 + AT_rich Low_complexity Low_complexity 1 27 0 1112 148 17 0 chr9 133144595 133144771 -9126673 + AluSg/x SINE Alu 131 309 -1 25 31 0 0 chr9 133144771 133144803 -9126641 + AT_rich Low_complexity Low_complexity 1 32 0 252 0 0 0 chr9 133144857 133144885 -9126559 + (CA)n Simple_repeat Simple_repeat 1 28 0 606 193 55 0 chr9 133145078 133145187 -9126257 - FLAM_A SINE Alu -18 115 1 25 0 0 0 chr9 133145196 133145221 -9126223 + AT_rich Low_complexity Low_complexity 1 25 0 2242 108 7 0 chr9 133146053 133146359 -9125085 - AluSq SINE Alu -5 308 1 1889 161 0 3 chr9 133146569 133146874 -9124570 - AluJb SINE Alu -8 304 1 2300 113 0 0 chr9 133147171 133147472 -9123972 + AluSx SINE Alu 1 301 -11 1803 162 3 19 chr9 133147720 133148035 -9123409 + AluJo SINE Alu 1 310 -2 994 158 13 13 chr9 133148172 133148330 -9123114 + AluJb SINE Alu 137 294 -18 2314 99 7 3 chr9 133148332 133148635 -9122809 + AluSg SINE Alu 1 304 -6 1653 181 112 45 chr9 133148699 133149146 -9122298 - L1MB8 LINE L1 0 6178 5702 2017 101 0 24 chr9 133149148 133149435 -9122009 + AluSg SINE Alu 31 310 0 233 219 219 0 chr9 133149560 133149683 -9121761 - L2 LINE L2 -372 2942 2793 758 284 88 60 chr9 133149751 133150052 -9121392 - L2 LINE L2 -684 2630 2310 2211 103 3 19 chr9 133150052 133150363 -9121081 + AluSx SINE Alu 1 306 -6 758 284 88 60 chr9 133150363 133150515 -9120929 - L2 LINE L2 -1004 2310 2164 2149 87 0 58 chr9 133150596 133150907 -9120537 - AluSx SINE Alu -19 293 1 843 266 103 33 chr9 133150981 133151406 -9120038 + LTR33 LTR ERVL 47 501 -20 2202 111 13 7 chr9 133152638 133152936 -9118508 - AluSx SINE Alu -12 300 1 183 42 0 0 chr9 133153457 133153481 -9117963 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 691 116 0 0 chr9 133154604 133154699 -9116745 + AluJb SINE Alu 23 117 -195 243 146 0 0 chr9 133154705 133154746 -9116698 + (CA)n Simple_repeat Simple_repeat 2 42 0 614 121 8 24 chr9 133154756 133154880 -9116564 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 355 279 129 43 chr9 133155132 133155468 -9115976 - L2 LINE L2 -188 3125 2730 2181 102 0 14 chr9 133155468 133155786 -9115658 + AluSx SINE Alu 1 314 0 355 279 129 43 chr9 133155786 133155842 -9115602 - L2 LINE L2 -583 2730 2680 605 272 22 59 chr9 133155931 133156255 -9115189 - L2 LINE L2 -656 2658 2347 2090 106 7 0 chr9 133156255 133156548 -9114896 + AluSx SINE Alu 1 295 -17 185 286 0 20 chr9 133156651 133156700 -9114744 - L2 LINE L2 -983 2331 2284 488 162 0 76 chr9 133156896 133157001 -9114443 - FLAM_A SINE Alu -18 124 28 2491 88 0 0 chr9 133157134 133157439 -9114005 + AluSq SINE Alu 1 305 -8 236 238 20 139 chr9 133158315 133158466 -9112978 + L1ME LINE L1 5586 5718 -403 845 127 8 15 chr9 133158649 133158783 -9112661 + FLAM_C SINE Alu 1 133 0 2269 86 0 54 chr9 133158911 133159226 -9112218 - AluY SINE Alu -13 298 1 2151 123 3 0 chr9 133159226 133159527 -9111917 - AluSx SINE Alu -10 302 1 2036 105 3 25 chr9 133159902 133160212 -9111232 - AluSg SINE Alu 0 304 1 2331 113 0 0 chr9 133160408 133160708 -9110736 - AluSx SINE Alu -8 304 5 2182 120 0 13 chr9 133161150 133161459 -9109985 - AluSx SINE Alu -7 305 1 2119 125 0 0 chr9 133161546 133161834 -9109610 - AluSx SINE Alu -5 307 20 184 307 107 13 chr9 133162253 133162328 -9109116 + MIR SINE MIR 6 87 -175 2417 60 3 13 chr9 133162494 133162824 -9108620 - AluY SINE Alu 0 311 1 2174 107 6 41 chr9 133162826 133163143 -9108301 - AluSx SINE Alu -6 306 1 354 78 0 0 chr9 133163434 133163485 -9107959 - Alu SINE Alu -249 51 1 1858 192 13 0 chr9 133163599 133163907 -9107537 + AluJo SINE Alu 1 312 0 2158 117 0 0 chr9 133163958 133164248 -9107196 + AluSx SINE Alu 1 290 -22 2284 113 0 3 chr9 133164645 133164946 -9106498 + AluSx SINE Alu 5 304 -8 1113 182 9 36 chr9 133165198 133165423 -9106021 - MER20 DNA MER1_type 0 219 1 1944 104 38 10 chr9 133165905 133166194 -9105250 + AluSq SINE Alu 1 297 -16 2213 130 0 0 chr9 133166506 133166813 -9104631 - AluSq SINE Alu -6 307 1 2347 102 0 0 chr9 133167035 133167340 -9104104 - AluSg SINE Alu -5 305 1 2232 114 0 10 chr9 133168666 133168964 -9102480 - AluSx SINE Alu -17 295 1 2371 77 7 3 chr9 133169100 133169399 -9102045 + AluSp SINE Alu 1 300 -13 2660 56 0 0 chr9 133169791 133170095 -9101349 + AluY SINE Alu 1 304 -7 1963 100 4 4 chr9 133170108 133170377 -9101067 - AluSq SINE Alu -11 302 34 182 278 19 0 chr9 133170772 133170826 -9100618 + L3b LINE CR1 1522 1576 -7 2464 97 0 0 chr9 133171212 133171522 -9099922 + AluSg SINE Alu 1 310 0 1945 159 0 13 chr9 133171674 133171983 -9099461 - AluJo SINE Alu -5 307 3 2190 102 27 0 chr9 133172563 133172857 -9098587 + AluSg SINE Alu 4 305 -5 237 231 55 47 chr9 133173030 133173155 -9098289 + MER5A DNA MER1_type 3 139 -48 23 0 0 0 chr9 133173287 133173310 -9098134 + AT_rich Low_complexity Low_complexity 1 23 0 2894 53 3 8 chr9 133173652 133174008 -9097436 + THE1A LTR MaLR 2 355 0 473 308 85 14 chr9 133174308 133174382 -9097062 - MIR SINE MIR -35 227 160 180 0 0 0 chr9 133174382 133174402 -9097042 + (ATG)n Simple_repeat Simple_repeat 2 21 0 473 308 85 14 chr9 133174402 133174538 -9096906 - MIR SINE MIR -102 160 2 1970 114 20 47 chr9 133174561 133174701 -9096743 + AluSx SINE Alu 1 143 -169 2268 108 7 3 chr9 133174701 133175008 -9096436 + AluSq SINE Alu 1 308 -5 1970 114 20 47 chr9 133175008 133175166 -9096278 + AluSx SINE Alu 143 291 -21 813 246 157 34 chr9 133175498 133175531 -9095913 + HAL1b LINE L1 89 117 -1231 2454 73 0 16 chr9 133175531 133175845 -9095599 + AluSc SINE Alu 1 309 0 813 246 157 34 chr9 133175845 133176251 -9095193 + HAL1b LINE L1 117 582 -766 226 244 56 22 chr9 133176306 133176396 -9095048 + HAL1b LINE L1 670 762 -586 334 270 128 28 chr9 133176439 133176575 -9094869 + HAL1b LINE L1 857 1023 -325 1450 105 190 16 chr9 133176575 133176822 -9094622 - AluSg1 SINE Alu -19 290 1 334 270 128 28 chr9 133176822 133176896 -9094548 + HAL1b LINE L1 1023 1088 -260 401 256 79 15 chr9 133176983 133177200 -9094244 + L1MC/D LINE L1 5311 5541 -858 353 102 102 0 chr9 133177234 133177293 -9094151 + Alu SINE Alu 231 295 -6 864 187 56 35 chr9 133177368 133177418 -9094026 - MER58A DNA MER1_type -2196 224 176 2321 112 0 0 chr9 133177418 133177714 -9093730 + AluSg SINE Alu 1 296 -14 864 187 56 35 chr9 133177714 133177861 -9093583 - MER58A DNA MER1_type -2244 176 23 188 203 203 0 chr9 133178029 133178088 -9093356 + L2 LINE L2 2871 2941 -331 502 168 35 84 chr9 133178486 133178629 -9092815 - L2 LINE L2 0 3313 3178 1453 120 42 46 chr9 133178660 133178779 -9092665 + L1MA8 LINE L1 5995 6113 -178 1718 150 47 0 chr9 133178779 133179053 -9092391 + AluJb SINE Alu 2 288 -24 213 39 0 0 chr9 133179053 133179079 -9092365 + (GGGGA)n Simple_repeat Simple_repeat 4 29 0 1453 120 42 46 chr9 133179079 133179256 -9092188 + L1MA8 LINE L1 6111 6288 -3 1860 236 65 105 chr9 133179381 133179954 -9091490 - L2 LINE L2 -290 3023 2428 1868 108 4 8 chr9 133179954 133180205 -9091239 - AluSx SINE Alu -11 301 52 1860 236 65 105 chr9 133180205 133180297 -9091147 - L2 LINE L2 -885 2428 2334 1845 158 20 7 chr9 133180297 133180589 -9090855 - AluJo SINE Alu -16 296 1 1860 236 65 105 chr9 133180589 133180676 -9090768 - L2 LINE L2 -979 2334 2245 2489 86 0 0 chr9 133180676 133180980 -9090464 - AluY SINE Alu -7 304 1 1860 236 65 105 chr9 133180980 133181219 -9090225 - L2 LINE L2 -1068 2245 2074 251 114 0 0 chr9 133181493 133181528 -9089916 + Alu SINE Alu 1 35 -273 2487 86 0 0 chr9 133181571 133181873 -9089571 - AluSg SINE Alu -8 302 1 384 267 11 0 chr9 133182279 133182369 -9089075 - MIR3 SINE MIR -32 176 86 189 353 15 0 chr9 133182957 133183025 -9088419 - L2 LINE L2 -10 3303 3235 180 0 0 0 chr9 133183594 133183614 -9087830 + (T)n Simple_repeat Simple_repeat 1 20 0 417 244 134 80 chr9 133183649 133184088 -9087356 - L1ME LINE L1 -375 5746 5284 2467 106 0 0 chr9 133184126 133184438 -9087006 - AluSx SINE Alu 0 312 1 918 154 6 6 chr9 133184859 133185015 -9086429 + FRAM SINE Alu 1 156 -10 541 130 19 0 chr9 133185031 133185139 -9086305 + L1MC3 LINE L1 7575 7684 -101 1075 181 45 0 chr9 133185139 133185316 -9086128 - AluJo SINE Alu -127 185 1 5330 187 50 50 chr9 133185316 133186645 -9084799 - L1MC3 LINE L1 -198 7587 6259 2191 142 0 0 chr9 133186675 133186978 -9084466 - AluSx SINE Alu -9 303 1 1768 152 3 48 chr9 133186980 133187295 -9084149 - AluJo SINE Alu -11 301 1 1138 292 78 99 chr9 133187315 133187936 -9083508 - L1ME LINE L1 -1441 4705 4073 2302 110 0 0 chr9 133187936 133188235 -9083209 - AluSx SINE Alu -13 299 1 1138 292 78 99 chr9 133188235 133188491 -9082953 - L1ME LINE L1 -2073 4073 3846 2328 103 0 10 chr9 133188491 133188793 -9082651 - AluSx SINE Alu -13 299 1 1138 292 78 99 chr9 133188793 133188845 -9082599 - L1ME LINE L1 -2300 3846 3794 1056 211 48 0 chr9 133188954 133189181 -9082263 + MLT1F1 LTR MaLR 318 555 -12 2236 134 0 3 chr9 133189872 133190185 -9081259 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 133190260 133190283 -9081161 + AT_rich Low_complexity Low_complexity 1 23 0 1714 194 18 23 chr9 133190283 133190675 -9080769 - L1MB3 LINE L1 0 6183 5794 1412 140 0 5 chr9 133191160 133191367 -9080077 + AluSx SINE Alu 1 206 -106 232 298 236 24 chr9 133191864 133192237 -9079207 + L2 LINE L2 2855 3306 -7 191 36 36 0 chr9 133192237 133192265 -9079179 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 281 188 31 16 chr9 133192587 133192651 -9078793 - MIR SINE MIR -86 122 58 197 250 36 0 chr9 133192854 133192910 -9078534 - MIR SINE MIR -98 164 107 306 292 97 0 chr9 133193595 133193739 -9077705 - MER117 DNA MER1_type -39 158 1 378 297 95 7 chr9 133193971 133194119 -9077325 + L3b LINE CR1 1312 1472 -111 277 227 27 0 chr9 133196510 133196585 -9074859 + MIR SINE MIR 107 183 -79 2316 85 0 20 chr9 133196897 133197191 -9074253 + AluSg SINE Alu 3 290 -20 249 315 135 0 chr9 133198692 133198803 -9072641 + MIR SINE MIR 119 244 -18 399 314 25 8 chr9 133198835 133198953 -9072491 + L2 LINE L2 3153 3272 0 249 246 0 0 chr9 133198956 133199021 -9072423 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 708 227 0 0 chr9 133199041 133199217 -9072227 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 282 247 0 0 chr9 133199223 133199300 -9072144 + (TGGG)n Simple_repeat Simple_repeat 4 80 0 183 260 115 0 chr9 133200265 133200361 -9071083 + MIR SINE MIR 36 142 -66 1205 265 43 147 chr9 133201908 133203788 -9067656 + L1MC4a LINE L1 6210 7920 -41 1929 120 11 0 chr9 133203831 133204097 -9067347 + AluSx SINE Alu 5 273 -39 411 21 0 0 chr9 133204097 133204145 -9067299 + (TC)n Simple_repeat Simple_repeat 2 49 0 * 443 38 38 13 chr9 133204144 133204223 -9067221 + (TA)n Simple_repeat Simple_repeat 1 81 0 2329 124 0 0 chr9 133204235 133204542 -9066902 + AluSx SINE Alu 1 307 -5 1832 85 70 0 chr9 133204712 133204970 -9066474 - AluY SINE Alu -35 276 1 666 235 11 21 chr9 133205915 133206102 -9065342 + MER5A DNA MER1_type 5 189 0 2386 103 3 0 chr9 133206293 133206605 -9064839 - AluSq SINE Alu 0 313 1 211 345 3 40 chr9 133207182 133207332 -9064112 - MIR SINE MIR -61 147 47 21 0 0 0 chr9 133207541 133207562 -9063882 + AT_rich Low_complexity Low_complexity 1 21 0 337 320 8 8 chr9 133209527 133209652 -9061792 - MIR3 SINE MIR -6 202 78 21 71 0 0 chr9 133210455 133210497 -9060947 + AT_rich Low_complexity Low_complexity 1 42 0 1473 208 70 74 chr9 133211225 133211294 -9060150 + L1ME4a LINE L1 5353 5421 -700 2323 92 0 22 chr9 133211294 133211610 -9059834 - AluSg SINE Alu -1 309 1 1473 208 70 74 chr9 133211610 133211864 -9059580 + L1ME4a LINE L1 5421 5611 -510 2009 157 0 6 chr9 133211864 133212177 -9059267 + AluSx SINE Alu 1 311 -1 1473 208 70 74 chr9 133212177 133212427 -9059017 + L1ME4a LINE L1 5611 5861 -260 2280 131 0 0 chr9 133212427 133212740 -9058704 + AluSq SINE Alu 1 313 0 509 286 9 31 chr9 133212892 133213119 -9058325 + L1M4 LINE L1 5058 5279 -867 1763 162 4 0 chr9 133213121 133213392 -9058052 + AluJb SINE Alu 40 311 -1 1097 165 109 30 chr9 133213394 133213660 -9057784 + L1MB2 LINE L1 5853 6139 -32 2465 70 3 3 chr9 133213660 133213959 -9057485 + AluY SINE Alu 1 299 -12 1452 70 31 31 chr9 133213970 133214199 -9057245 + L1MA2 LINE L1 6076 6304 0 543 271 12 24 chr9 133214201 133214367 -9057077 - L1M4 LINE L1 -1286 4860 4697 609 235 51 82 chr9 133214387 133214642 -9056802 - MLT1L LTR MaLR -366 249 3 246 191 0 0 chr9 133215676 133215723 -9055721 + MIR SINE MIR 103 149 -59 2434 93 0 0 chr9 133215912 133216214 -9055230 - AluSx SINE Alu -10 302 1 2158 102 3 7 chr9 133216699 133216994 -9054450 + AluSq SINE Alu 13 306 -7 304 208 42 14 chr9 133217427 133217499 -9053945 - MLT1K LTR MaLR -3 585 512 767 139 0 0 chr9 133217501 133217616 -9053828 + FLAM_C SINE Alu 1 115 -18 1186 212 81 89 chr9 133217654 133217864 -9053580 - L1M4 LINE L1 -2509 3637 3427 1659 199 3 10 chr9 133217864 133218161 -9053283 - AluJb SINE Alu -17 295 1 1186 212 81 89 chr9 133218161 133218926 -9052518 - L1M4 LINE L1 -2719 3427 2554 2375 101 16 0 chr9 133219173 133219480 -9051964 - AluSx SINE Alu 0 312 1 1877 191 0 3 chr9 133219690 133219989 -9051455 - AluJo SINE Alu -14 298 1 1096 47 8 0 chr9 133220544 133220671 -9050773 + AluSq/x SINE Alu 1 128 -185 238 254 70 18 chr9 133221168 133221282 -9050162 + L2 LINE L2 2933 3052 -220 2124 126 3 10 chr9 133221391 133221701 -9049743 - AluJb SINE Alu -4 308 1 2371 114 0 0 chr9 133221956 133222264 -9049180 - AluSx SINE Alu -4 308 1 356 301 84 14 chr9 133223128 133223271 -9048173 - MLT1J LTR MaLR -3 508 356 613 178 0 9 chr9 133223342 133223449 -9047995 - MLT1J LTR MaLR -336 175 70 2152 124 3 26 chr9 133224799 133225106 -9046338 - AluSx SINE Alu -12 300 1 605 162 0 10 chr9 133225129 133225228 -9046216 - FLAM_C SINE Alu -22 121 24 333 204 45 23 chr9 133226469 133226557 -9044887 - AluJ/FLAM SINE Alu -212 90 1 1824 144 6 58 chr9 133226558 133226871 -9044573 - AluSq SINE Alu -16 297 1 2026 124 14 3 chr9 133226873 133227164 -9044280 - AluSq SINE Alu -17 296 3 2571 78 0 0 chr9 133227189 133227497 -9043947 - AluSg SINE Alu -2 308 1 2534 80 6 0 chr9 133227643 133227954 -9043490 - AluSp SINE Alu 0 313 1 2399 81 3 10 chr9 133227964 133228262 -9043182 - AluSg SINE Alu -4 306 11 192 174 0 22 chr9 133228355 133228401 -9043043 + MIR SINE MIR 106 150 -58 2195 130 0 0 chr9 133228425 133228725 -9042719 - AluSx SINE Alu -12 300 1 1934 175 36 16 chr9 133228812 133229213 -9042231 + MLT1D LTR MaLR 2 393 -74 1426 43 4 12 chr9 133229223 133229455 -9041989 - AluY SINE Alu -1 310 2 718 177 23 0 chr9 133229457 133229587 -9041857 - AluJo/FLAM SINE Alu -169 133 1 622 227 33 0 chr9 133229730 133229880 -9041564 - MER103 DNA DNA 0 166 12 1281 174 18 126 chr9 133229956 133230290 -9041154 + AluJo SINE Alu 2 299 -3 2168 118 75 26 chr9 133230457 133230804 -9040640 + THE1B LTR MaLR 1 364 0 636 238 113 68 chr9 133231348 133231608 -9039836 + MIR SINE MIR 1 256 -6 437 163 0 0 chr9 133231954 133232034 -9039410 - AluSc SINE Alu -1 308 229 1336 109 0 0 chr9 133232348 133232523 -9038921 - AluSx SINE Alu -137 175 1 2194 110 0 0 chr9 133233200 133233501 -9037943 + AluSx SINE Alu 1 301 -11 197 360 13 0 chr9 133234167 133234242 -9037202 - MIR SINE MIR -90 172 97 315 218 13 0 chr9 133234725 133234803 -9036641 + MER53 DNA DNA 5 83 -106 409 356 85 16 chr9 133234821 133235068 -9036376 + L2 LINE L2 3009 3272 0 234 86 0 0 chr9 133236177 133236212 -9035232 + AluSg SINE Alu 1 35 -265 508 51 0 101 chr9 133236215 133236294 -9035150 - Alu SINE Alu -17 295 225 1957 97 10 24 chr9 133236296 133236584 -9034860 + AluSg SINE Alu 27 310 0 289 301 186 6 chr9 133236728 133236884 -9034560 - MIR SINE MIR -33 229 46 237 174 69 39 chr9 133236965 133237061 -9034383 - MIR SINE MIR -86 122 16 2262 76 0 7 chr9 133237091 133237425 -9034019 + AluSx SINE Alu 2 333 0 296 168 115 18 chr9 133237427 133237540 -9033904 + L1MB7 LINE L1 6045 6168 -16 1985 117 3 3 chr9 133237728 133238033 -9033411 - AluSx SINE Alu 0 305 1 2311 103 0 0 chr9 133238442 133238752 -9032692 - AluSq SINE Alu -3 310 1 504 214 311 0 chr9 133239039 133239277 -9032167 + L2 LINE L2 1985 2296 -1018 21 36 0 0 chr9 133239403 133239431 -9032013 + AT_rich Low_complexity Low_complexity 1 28 0 2154 137 0 9 chr9 133239714 133240029 -9031415 + AluSx SINE Alu 1 312 0 384 288 16 0 chr9 133240035 133240160 -9031284 + L1ME LINE L1 3726 3852 -2294 1453 176 51 61 chr9 133240160 133240286 -9031158 + AluJb SINE Alu 1 127 -185 180 27 81 0 chr9 133240286 133240323 -9031121 + A-rich Low_complexity Low_complexity 3 42 0 1453 176 51 61 chr9 133240323 133240509 -9030935 + AluJb SINE Alu 127 310 -2 518 212 186 61 chr9 133240510 133240741 -9030703 + MLT1F LTR MaLR 123 382 -160 398 235 0 0 chr9 133240748 133240833 -9030611 + MER81 DNA DNA 10 94 -20 396 223 223 0 chr9 133240826 133240965 -9030479 + MLT1F LTR MaLR 394 563 -4 * 1168 269 14 6 chr9 133240969 133241326 -9030118 + L1ME LINE L1 5343 5702 -468 249 263 18 0 chr9 133241389 133241446 -9029998 + GA-rich Low_complexity Low_complexity 3 60 0 2371 85 7 0 chr9 133241631 133241937 -9029507 - AluSg SINE Alu 0 310 3 182 280 67 0 chr9 133242455 133242530 -9028914 + MIR SINE MIR 71 150 -112 462 358 59 5 chr9 133242954 133243175 -9028269 - MIR SINE MIR -20 242 10 274 394 6 6 chr9 133243459 133243619 -9027825 + (TG)n Simple_repeat Simple_repeat 1 160 0 * 277 296 39 39 chr9 133243591 133243770 -9027674 + (CATG)n Simple_repeat Simple_repeat 2 180 0 * 372 371 6 0 chr9 133243645 133243820 -9027624 + (TG)n Simple_repeat Simple_repeat 2 177 0 312 161 173 12 chr9 133244219 133244300 -9027144 + MIR SINE MIR 58 151 -57 405 272 30 52 chr9 133244709 133244874 -9026570 + MIR SINE MIR 54 218 -44 2391 74 0 0 chr9 133245166 133245464 -9025980 - AluSx SINE Alu -14 298 1 244 210 49 5 chr9 133245471 133245559 -9025885 - MIR SINE MIR -63 145 53 268 242 16 0 chr9 133246364 133246426 -9025018 - MIR3 SINE MIR -53 155 93 1201 210 104 29 chr9 133247302 133247716 -9023728 + MER31B LTR ERV1 22 466 0 265 306 113 68 chr9 133247724 133247989 -9023455 + L2 LINE L2 2996 3272 0 2029 116 24 0 chr9 133248140 133248434 -9023010 + AluSx SINE Alu 1 301 -11 2397 66 3 3 chr9 133248440 133248744 -9022700 + AluY SINE Alu 1 304 -7 445 257 16 45 chr9 133249352 133249513 -9021931 + MIR SINE MIR 25 177 -62 581 216 8 8 chr9 133249798 133249923 -9021521 - AluSq/x SINE Alu -175 138 14 435 281 62 12 chr9 133249962 133250122 -9021322 + L1M4 LINE L1 4881 5048 -1098 412 278 16 8 chr9 133250259 133250385 -9021059 + MLT1L LTR MaLR 489 615 0 314 385 32 6 chr9 133250583 133250739 -9020705 + L2 LINE L2 3113 3272 0 1190 163 40 61 chr9 133250984 133251185 -9020259 - AluJo SINE Alu -7 305 110 2596 100 3 42 chr9 133251185 133251398 -9020046 - THE1B LTR MaLR 0 364 170 2057 111 0 17 chr9 133251398 133251718 -9019726 + AluSx SINE Alu 1 315 0 2596 100 3 42 chr9 133251718 133251882 -9019562 - THE1B LTR MaLR -194 170 1 1190 163 40 61 chr9 133251882 133251957 -9019487 - AluJo SINE Alu -202 110 35 315 313 67 67 chr9 133252087 133252192 -9019252 + L1ME4a LINE L1 5923 6030 -91 2171 103 7 0 chr9 133252192 133252484 -9018960 + AluY SINE Alu 1 294 -17 315 313 67 67 chr9 133252484 133252528 -9018916 + L1ME4a LINE L1 6029 6072 -49 630 276 32 60 chr9 133252575 133252712 -9018732 + MIR SINE MIR 20 159 -103 1729 147 0 8 chr9 133252712 133252977 -9018467 + AluSx SINE Alu 31 293 -19 2187 87 13 13 chr9 133252982 133253281 -9018163 + AluSx SINE Alu 6 304 -8 630 276 32 60 chr9 133253281 133253387 -9018057 + MIR SINE MIR 163 262 0 335 305 21 107 chr9 133253591 133253824 -9017620 - MIR SINE MIR -12 250 38 2183 121 0 0 chr9 133254158 133254464 -9016980 + AluSx SINE Alu 1 306 -6 245 320 0 24 chr9 133254662 133254787 -9016657 - L1MC5 LINE L1 -50 7911 7790 2423 207 81 0 chr9 133254835 133255468 -9015976 - L1ME2 LINE L1 -11 6153 5470 210 71 0 0 chr9 133256315 133256343 -9015101 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 221 304 147 0 chr9 133257315 133257417 -9014027 - MIR SINE MIR -16 246 130 357 247 272 0 chr9 133258370 133258528 -9012916 + MER63A DNA MER1_type 10 210 0 286 323 143 0 chr9 133258596 133258813 -9012631 + L2 LINE L2 2811 3058 -214 920 76 0 0 chr9 133258832 133258950 -9012494 + AluSp/q SINE Alu 195 312 -1 316 330 71 56 chr9 133258950 133259147 -9012297 + L2 LINE L2 3068 3267 -5 483 314 12 12 chr9 133260818 133260987 -9010457 + MIR SINE MIR 14 182 -80 264 279 12 23 chr9 133261381 133261467 -9009977 + L2 LINE L2 3171 3255 -17 1818 156 0 43 chr9 133262034 133262360 -9009084 + AluJo SINE Alu 1 312 0 305 303 40 0 chr9 133262419 133262518 -9008926 + MIR SINE MIR 45 147 -61 2271 112 0 0 chr9 133262763 133263068 -9008376 - AluSg SINE Alu -5 305 1 249 281 16 0 chr9 133263637 133263701 -9007743 + L2 LINE L2 3249 3313 0 184 368 44 26 chr9 133263700 133263814 -9007630 + MIR3 SINE MIR 14 129 -79 * 376 154 15 0 chr9 133264312 133264377 -9007067 + MIR SINE MIR 81 146 -62 2082 77 31 3 chr9 133264612 133264898 -9006546 + AluSq SINE Alu 1 294 -19 469 328 177 15 chr9 133265536 133266155 -9005289 - L2 LINE L2 -91 3181 2471 2281 112 0 3 chr9 133266477 133266790 -9004654 + AluSx SINE Alu 1 312 0 270 152 0 0 chr9 133267063 133267109 -9004335 + MER117 DNA MER1_type 119 164 -33 1738 167 20 7 chr9 133267329 133267629 -9003815 - AluJo SINE Alu -6 306 3 858 142 71 0 chr9 133267631 133267772 -9003672 - FRAM SINE Alu -8 168 18 516 331 53 8 chr9 133267879 133268277 -9003167 + L2 LINE L2 2854 3271 -1 263 309 63 8 chr9 133268276 133268402 -9003042 + MIR SINE MIR 97 229 -33 * 732 286 6 0 chr9 133268420 133268598 -9002846 - MIR SINE MIR -36 226 48 1451 197 17 17 chr9 133268601 133268891 -9002553 + AluJo SINE Alu 4 293 -19 33 0 0 23 chr9 133268891 133268913 -9002531 + AT_rich Low_complexity Low_complexity 1 22 -21 2023 99 0 14 chr9 133268913 133269197 -9002247 + AluSx SINE Alu 24 303 -9 33 0 0 23 chr9 133269197 133269218 -9002226 + AT_rich Low_complexity Low_complexity 22 43 0 202 342 61 35 chr9 133269330 133269444 -9002000 + MIR SINE MIR 117 233 -29 1498 127 138 19 chr9 133269782 133270050 -9001394 + AluSx SINE Alu 1 300 -12 306 236 0 0 chr9 133270050 133270105 -9001339 - L1MC4 LINE L1 -1340 6702 6648 315 0 0 0 chr9 133270105 133270140 -9001304 + (CA)n Simple_repeat Simple_repeat 2 36 0 340 339 131 6 chr9 133270156 133270307 -9001137 + MIR SINE MIR 20 199 -63 2182 107 0 7 chr9 133270307 133270607 -9000837 + AluSx SINE Alu 1 298 -14 340 339 131 6 chr9 133270607 133270638 -9000806 + MIR SINE MIR 199 225 -37 301 344 95 39 chr9 133270849 133271186 -9000258 - L2 LINE L2 -337 2977 2622 258 301 68 15 chr9 133271167 133271300 -9000144 - L2 LINE L2 -212 3060 2921 * 421 247 27 20 chr9 133271662 133271808 -8999636 - MER117 DNA MER1_type -50 147 1 242 284 27 0 chr9 133271808 133271882 -8999562 - MIR3 SINE MIR -48 160 85 308 341 7 22 chr9 133272991 133273126 -8998318 + MIR SINE MIR 73 205 -57 279 0 0 0 chr9 133273258 133273289 -8998155 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 207 297 14 81 chr9 133273573 133273721 -8997723 - MIR SINE MIR -117 145 8 2242 113 0 0 chr9 133273794 133274104 -8997340 + AluY SINE Alu 1 310 -1 497 222 42 42 chr9 133274352 133274496 -8996948 + MIR SINE MIR 1 144 -118 237 312 72 80 chr9 133274532 133274657 -8996787 - MIR SINE MIR -80 182 59 2117 115 3 10 chr9 133275202 133275506 -8995938 - AluSx SINE Alu -10 302 1 866 270 36 7 chr9 133276024 133276302 -8995142 + L1MC4 LINE L1 7392 7677 -365 2078 102 13 20 chr9 133276425 133276730 -8994714 - AluSx SINE Alu -9 303 1 2059 103 28 0 chr9 133277465 133277755 -8993689 + AluSx SINE Alu 3 300 -12 301 246 0 0 chr9 133277985 133278046 -8993398 + MIR SINE MIR 85 145 -63 351 308 32 58 chr9 133278459 133278615 -8992829 + MIR SINE MIR 34 185 -77 289 270 133 3 chr9 133280168 133280287 -8991157 + MIR3 SINE MIR 44 172 -47 279 287 28 28 chr9 133282351 133282459 -8988985 - MIR SINE MIR -133 129 22 455 244 89 8 chr9 133282647 133282770 -8988674 + MIR SINE MIR 37 169 -93 258 311 111 44 chr9 133282877 133283012 -8988432 + L2 LINE L2 3167 3310 -3 297 0 0 0 chr9 133283121 133283154 -8988290 + (TC)n Simple_repeat Simple_repeat 2 34 0 270 0 0 0 chr9 133283277 133283307 -8988137 + (TA)n Simple_repeat Simple_repeat 2 31 0 2208 88 0 53 chr9 133283307 133283627 -8987817 - AluSx SINE Alu -9 303 1 196 293 35 0 chr9 133283735 133283793 -8987651 - L2 LINE L2 -7 3265 3206 403 229 9 55 chr9 133283859 133283968 -8987476 + MIR SINE MIR 85 188 -74 474 309 95 77 chr9 133283983 133284170 -8987274 - L2 LINE L2 -1 3271 3089 2063 131 3 3 chr9 133284170 133284476 -8986968 + AluSq SINE Alu 1 306 -7 2124 68 51 10 chr9 133284476 133284768 -8986676 + AluSp SINE Alu 1 304 -9 474 309 95 77 chr9 133284768 133284957 -8986487 - L2 LINE L2 -182 3090 2887 197 360 13 0 chr9 133286154 133286229 -8985215 - MIR SINE MIR -90 172 97 315 218 13 0 chr9 133286712 133286790 -8984654 + MER53 DNA DNA 5 83 -106 409 356 85 16 chr9 133286808 133287055 -8984389 + L2 LINE L2 3009 3272 0 234 86 0 0 chr9 133288164 133288199 -8983245 + AluSg SINE Alu 1 35 -265 508 51 0 101 chr9 133288202 133288281 -8983163 - Alu SINE Alu -17 293 223 1957 97 10 24 chr9 133288283 133288571 -8982873 + AluSg SINE Alu 27 310 0 289 301 186 6 chr9 133288715 133288871 -8982573 - MIR SINE MIR -33 229 46 237 174 69 39 chr9 133288952 133289048 -8982396 - MIR SINE MIR -86 122 16 2396 78 0 3 chr9 133289078 133289387 -8982057 + AluY SINE Alu 2 309 -2 623 159 35 7 chr9 133289404 133289549 -8981895 + GA-rich Low_complexity Low_complexity 2 150 0 248 260 180 0 chr9 133289942 133290042 -8981402 - MIR SINE MIR -71 137 20 207 279 106 68 chr9 133290695 133290856 -8980588 - L3 LINE CR1 -10 1567 1401 398 311 31 25 chr9 133290894 133291055 -8980389 + MIR SINE MIR 20 181 -81 456 332 81 14 chr9 133291537 133291760 -8979684 + MIR SINE MIR 9 246 -16 278 272 48 48 chr9 133291874 133291977 -8979467 - MIR SINE MIR -71 191 89 285 331 81 0 chr9 133292085 133292209 -8979235 - MIR SINE MIR -120 142 9 199 231 0 0 chr9 133292451 133292490 -8978954 - L2 LINE L2 -16 3256 3218 217 371 21 10 chr9 133292494 133292591 -8978853 - MIR SINE MIR -115 147 50 1876 148 3 3 chr9 133292853 133293135 -8978309 + AluSx SINE Alu 1 285 -27 504 0 0 0 chr9 133293135 133293191 -8978253 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 540 279 0 7 chr9 133293273 133293409 -8978035 + MIR3 SINE MIR 63 197 -11 860 267 61 61 chr9 133293409 133293884 -8977560 + L1ME4a LINE L1 5391 5865 -256 2122 115 7 0 chr9 133293956 133294244 -8977200 + AluSx SINE Alu 3 292 -20 752 74 9 0 chr9 133294244 133294352 -8977092 + (GGGGA)n Simple_repeat Simple_repeat 5 113 0 292 307 197 8 chr9 133294356 133294600 -8976844 + L2 LINE L2 2507 2796 -518 866 144 0 15 chr9 133295022 133295154 -8976290 + FLAM_C SINE Alu 1 130 -3 203 278 139 15 chr9 133295182 133295378 -8976066 - MIR SINE MIR -36 226 3 247 206 0 32 chr9 133295449 133295512 -8975932 - MIR SINE MIR -74 134 74 269 253 177 0 chr9 133296381 133296460 -8974984 + L2 LINE L2 3203 3295 -18 1593 186 0 11 chr9 133296691 133297048 -8974396 + AluJo SINE Alu 1 354 0 474 347 40 6 chr9 133297069 133297245 -8974199 - MIR SINE MIR -1 261 80 429 297 45 7 chr9 133297653 133297808 -8973636 + MER5A DNA MER1_type 3 163 -26 1672 75 184 4 chr9 133298379 133298634 -8972810 - AluSp SINE Alu -12 301 1 622 287 10 20 chr9 133298668 133298863 -8972581 + MIR SINE MIR 25 217 -45 26 30 0 0 chr9 133300273 133300306 -8971138 + GC_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr9 133300389 133300409 -8971035 + (CGGGGG)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr9 133300526 133300549 -8970895 + GC_rich Low_complexity Low_complexity 1 23 0 228 174 58 14 chr9 133300549 133300618 -8970826 + (CCGGG)n Simple_repeat Simple_repeat 1 72 0 246 154 35 63 chr9 133300625 133300768 -8970676 + (CGCGG)n Simple_repeat Simple_repeat 1 139 0 232 280 11 51 chr9 133300800 133300975 -8970469 + C-rich Low_complexity Low_complexity 5 172 0 23 33 0 0 chr9 133301067 133301097 -8970347 + GC_rich Low_complexity Low_complexity 1 30 0 188 359 88 6 chr9 133301667 133301837 -8969607 + L2 LINE L2 3037 3220 -93 1616 193 20 3 chr9 133302463 133302737 -8968707 + AluJb SINE Alu 1 269 -43 207 0 0 0 chr9 133302737 133302760 -8968684 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 255 31 0 0 chr9 133302759 133302791 -8968653 + (CA)n Simple_repeat Simple_repeat 1 32 0 1616 193 20 3 chr9 133302760 133302822 -8968622 + AluJb SINE Alu 269 311 -1 258 105 0 0 chr9 133302822 133302860 -8968584 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1794 146 17 14 chr9 133302867 133303149 -8968295 + AluJb SINE Alu 1 284 -23 297 118 0 0 chr9 133303149 133303200 -8968244 + (CA)n Simple_repeat Simple_repeat 2 52 0 189 371 0 0 chr9 133303212 133303274 -8968170 - L2 LINE L2 -4 3309 3248 255 273 172 53 chr9 133303417 133303577 -8967867 - L2 LINE L2 0 3313 3121 2284 114 0 0 chr9 133303577 133303883 -8967561 + AluSg SINE Alu 5 310 0 255 273 172 53 chr9 133303883 133303931 -8967513 - L2 LINE L2 -192 3121 3080 276 332 86 31 chr9 133304142 133304434 -8967010 - L2 LINE L2 -502 2812 2505 1010 256 195 5 chr9 133304722 133305152 -8966292 - L2 LINE L2 -818 2496 1985 2311 103 0 0 chr9 133305439 133305749 -8965695 + AluSq SINE Alu 1 310 -3 187 307 239 25 chr9 133305777 133306132 -8965312 - L2 LINE L2 -586 2728 2298 2071 109 0 3 chr9 133306158 133306464 -8964980 + AluSx SINE Alu 1 305 0 296 168 115 18 chr9 133306652 133306765 -8964679 - L1MB7 LINE L1 -16 6168 6045 344 22 22 0 chr9 133306767 133306812 -8964632 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 2253 76 0 7 chr9 133306812 133307100 -8964344 - AluSx SINE Alu -24 288 3 1917 161 3 3 chr9 133307155 133307466 -8963978 - AluJb SINE Alu -1 311 1 200 365 48 48 chr9 133307527 133307672 -8963772 + MER5A DNA MER1_type 9 153 -36 528 120 0 0 chr9 133307734 133307834 -8963610 + (TTAGGG)n Simple_repeat Simple_repeat 1 100 0 218 363 15 52 chr9 133307952 133308087 -8963357 + L2 LINE L2 2231 2360 -954 2447 57 3 0 chr9 133308263 133308564 -8962880 + AluSp SINE Alu 1 302 -11 786 92 0 0 chr9 133308594 133308703 -8962741 - AluY SINE Alu 0 311 203 1022 214 31 21 chr9 133309018 133309307 -8962137 + MER33 DNA MER1_type 1 292 -32 1950 94 0 8 chr9 133309307 133309573 -8961871 + AluSx SINE Alu 34 297 -15 2372 97 0 0 chr9 133309574 133309884 -8961560 + AluSg SINE Alu 1 310 0 2002 117 14 0 chr9 133309907 133310198 -8961246 + AluSq SINE Alu 3 297 -16 1777 143 3 57 chr9 133310199 133310513 -8960931 + AluSq SINE Alu 1 297 -16 2050 103 7 0 chr9 133310514 133310827 -8960617 + AluJb SINE Alu 1 315 0 714 172 0 69 chr9 133310849 133310862 -8960582 - FLAM_A SINE Alu -170 141 129 1886 164 10 3 chr9 133310862 133311167 -8960277 - AluJb SINE Alu -5 307 1 714 172 0 69 chr9 133311167 133311298 -8960146 - FLAM_A SINE Alu -182 129 7 1228 79 9 3 chr9 133311312 133311541 -8959903 - AluY SINE Alu -2 309 1 774 177 23 0 chr9 133311541 133311671 -8959773 - AluJo/FLAM SINE Alu -169 133 1 586 227 33 0 chr9 133311814 133311964 -8959480 - MER103 DNA DNA 0 166 12 1281 174 18 126 chr9 133312040 133312374 -8959070 + AluJo SINE Alu 2 299 -3 2168 118 75 26 chr9 133312541 133312888 -8958556 + THE1B LTR MaLR 1 364 0 636 238 113 68 chr9 133313432 133313692 -8957752 + MIR SINE MIR 1 256 -6 437 163 0 0 chr9 133314038 133314118 -8957326 - AluSc SINE Alu -1 308 229 1336 109 0 0 chr9 133314432 133314607 -8956837 - AluSx SINE Alu -137 175 1 2194 110 0 0 chr9 133315284 133315585 -8955859 + AluSx SINE Alu 1 301 -11 289 259 0 35 chr9 133316076 133316161 -8955283 - MIR3 SINE MIR -2 206 125 209 204 37 0 chr9 133316506 133316560 -8954884 + L2 LINE L2 3203 3258 -55 359 253 178 27 chr9 133316692 133316838 -8954606 + MIR3 SINE MIR 41 208 0 1662 90 0 0 chr9 133316844 133317067 -8954377 + AluSg/x SINE Alu 83 305 -5 274 332 173 31 chr9 133317215 133317441 -8954003 - MIR SINE MIR 0 262 5 2165 104 0 7 chr9 133317457 133317755 -8953689 + AluSq SINE Alu 2 297 -16 1693 155 18 7 chr9 133318268 133318552 -8952892 + AluJo SINE Alu 16 302 -10 2199 90 20 0 chr9 133318553 133318691 -8952753 + AluSx SINE Alu 1 135 -177 2207 89 3 3 chr9 133318691 133318983 -8952461 + AluSc SINE Alu 10 301 -8 2199 90 20 0 chr9 133318983 133319143 -8952301 + AluSx SINE Alu 135 305 -7 2257 103 0 10 chr9 133319639 133319951 -8951493 - AluSg SINE Alu -1 309 1 862 110 0 29 chr9 133319953 133320089 -8951355 - FLAM_C SINE Alu -1 142 11 1598 169 60 24 chr9 133320095 133320229 -8951215 + MLT1A1 LTR MaLR 22 150 -215 2154 125 0 0 chr9 133320229 133320526 -8950918 + AluSx SINE Alu 1 297 -15 1598 169 60 24 chr9 133320526 133320723 -8950721 + MLT1A1 LTR MaLR 150 365 0 2281 100 3 0 chr9 133321479 133321780 -8949664 + AluSx SINE Alu 2 303 -9 203 152 0 0 chr9 133321871 133321904 -8949540 + (CCTG)n Simple_repeat Simple_repeat 4 36 0 4174 80 13 11 chr9 133322126 133322514 -8948930 + MER41A LTR ERV1 1 393 -161 2223 88 0 0 chr9 133322514 133322840 -8948604 + AluSx SINE Alu 1 326 0 4174 80 13 11 chr9 133322840 133323003 -8948441 + MER41A LTR ERV1 393 554 0 901 251 83 71 chr9 133323021 133323488 -8947956 - MLT1K LTR MaLR -3 473 1 2000 133 3 29 chr9 133323530 133323839 -8947605 + AluSx SINE Alu 1 301 -11 299 347 37 16 chr9 133323884 133324074 -8947370 + L2 LINE L2 2918 3111 -161 2721 162 37 146 chr9 133324096 133324146 -8947298 - L1MB8 LINE L1 0 6178 6124 225 0 0 0 chr9 133324146 133324171 -8947273 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1770 77 96 8 chr9 133324171 133324431 -8947013 - AluY SINE Alu -28 283 1 2721 162 37 146 chr9 133324431 133324462 -8946982 - L1MB8 LINE L1 -53 6125 6092 1800 186 0 0 chr9 133324462 133324758 -8946686 + AluJb SINE Alu 1 296 -16 2721 162 37 146 chr9 133324758 133325256 -8946188 - L1MB8 LINE L1 -86 6092 5735 2188 115 3 6 chr9 133325256 133325569 -8945875 - AluSx SINE Alu 0 312 1 2721 162 37 146 chr9 133325569 133325923 -8945521 - L1MB8 LINE L1 -443 5735 5344 1433 213 25 18 chr9 133325919 133326313 -8945131 + L1MB2 LINE L1 4883 5279 -867 * 1694 165 4 0 chr9 133326313 133326586 -8944858 + AluJb SINE Alu 38 311 -1 1013 165 109 30 chr9 133326588 133326854 -8944590 + L1MB2 LINE L1 5853 6139 -32 2232 85 3 3 chr9 133326854 133327149 -8944295 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr9 133327193 133327214 -8944230 + (A)n Simple_repeat Simple_repeat 1 21 0 804 156 47 0 chr9 133327221 133327349 -8944095 + FAM SINE Alu 6 139 -46 1739 184 65 28 chr9 133327359 133327457 -8943987 - L1MB8 LINE L1 -1327 4819 4726 1688 121 101 0 chr9 133327457 133327738 -8943706 + AluSx SINE Alu 1 307 0 1739 184 65 28 chr9 133327738 133328143 -8943301 - L1MB8 LINE L1 -1420 4726 4296 381 297 84 26 chr9 133328190 133328345 -8943099 - L2 LINE L2 -610 2704 2541 216 0 0 0 chr9 133328405 133328429 -8943015 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2237 75 31 3 chr9 133328506 133328800 -8942644 + AluSx SINE Alu 6 307 -5 189 328 33 0 chr9 133329039 133329100 -8942344 - L2 LINE L2 -1310 2004 1942 301 243 54 0 chr9 133331284 133331358 -8940086 + MER5A DNA MER1_type 6 83 -106 2150 116 0 7 chr9 133331680 133331982 -8939462 - AluSx SINE Alu -12 300 1 301 167 0 0 chr9 133332100 133332154 -8939290 + MIR SINE MIR 36 89 -119 895 279 13 22 chr9 133332235 133332551 -8938893 + L1ME2 LINE L1 5849 6161 -3 470 152 7 46 chr9 133334631 133334782 -8936662 + G-rich Low_complexity Low_complexity 4 148 0 377 278 9 28 chr9 133338261 133338369 -8933075 + MIR SINE MIR 29 134 -128 246 116 0 0 chr9 133340337 133340380 -8931064 + (TA)n Simple_repeat Simple_repeat 2 44 0 2244 119 3 0 chr9 133340380 133340682 -8930762 - AluSx SINE Alu -9 303 1 207 324 78 28 chr9 133340822 133340964 -8930480 - MER5B DNA MER1_type -2 176 28 1764 153 0 14 chr9 133341012 133341287 -8930157 + AluJb SINE Alu 11 281 -31 2458 86 7 0 chr9 133342293 133342597 -8928847 - AluSq SINE Alu -7 306 1 2194 125 0 28 chr9 133345184 133345503 -8925941 + AluSx SINE Alu 1 310 -2 209 171 0 0 chr9 133346379 133346414 -8925030 + GA-rich Low_complexity Low_complexity 1 35 0 2501 59 3 16 chr9 133346537 133346844 -8924600 + AluSp SINE Alu 1 303 -10 2318 75 0 33 chr9 133347114 133347419 -8924025 - AluSc SINE Alu -14 295 1 620 60 12 0 chr9 133347509 133347593 -8923851 + Alu SINE Alu 223 307 -4 690 152 7 58 chr9 133347648 133347786 -8923658 + FLAM_A SINE Alu 1 131 -2 2068 114 62 0 chr9 133347806 133348096 -8923348 + AluSx SINE Alu 1 308 -4 515 179 54 18 chr9 133348526 133348638 -8922806 - MER63 DNA MER1_type -311 751 10 794 130 7 65 chr9 133349389 133349527 -8921917 + AluJ SINE Alu 1 130 -172 734 147 0 0 chr9 133349552 133349661 -8921783 + FLAM_A SINE Alu 34 142 0 802 225 16 11 chr9 133349671 133349685 -8921759 + AluJb SINE Alu 120 132 -180 2213 120 0 0 chr9 133349685 133349976 -8921468 + AluSg1 SINE Alu 1 291 -18 802 225 16 11 chr9 133349976 133350152 -8921292 + AluJb SINE Alu 132 311 -1 1756 122 111 0 chr9 133350175 133350446 -8920998 - AluJb SINE Alu -11 301 1 317 304 95 32 chr9 133350456 133350614 -8920830 - L2 LINE L2 -1 3271 3104 2540 74 0 3 chr9 133350996 133351308 -8920136 + AluY SINE Alu 1 311 0 1346 58 117 19 chr9 133351745 133351950 -8919494 - MER30 DNA MER1_type 0 230 6 1293 186 103 8 chr9 133351964 133352257 -8919187 - AluJo SINE Alu 0 322 6 512 125 87 29 chr9 133352277 133352381 -8919063 - HY1 scRNA scRNA -2 110 1 1173 168 151 13 chr9 133353091 133353329 -8918115 + AluJb SINE Alu 13 283 -29 282 29 0 0 chr9 133353332 133353367 -8918077 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 682 279 29 20 chr9 133353542 133353746 -8917698 + MIR SINE MIR 3 208 -54 232 296 56 0 chr9 133354376 133354447 -8916997 + MER5B DNA MER1_type 1 75 -103 361 299 8 8 chr9 133355030 133355147 -8916297 - MIR SINE MIR -138 124 8 2364 104 0 0 chr9 133355940 133356238 -8915206 + AluSq SINE Alu 1 298 -15 329 250 0 13 chr9 133356276 133356352 -8915092 + L1ME3 LINE L1 6088 6162 0 546 100 0 0 chr9 133357285 133357355 -8914089 + AluJ/FLAM SINE Alu 2 71 -241 309 221 0 15 chr9 133357355 133357401 -8914043 - AluSg/x SINE Alu -123 179 133 2323 86 10 7 chr9 133357401 133357704 -8913740 - AluY SINE Alu -7 304 1 309 221 0 15 chr9 133357704 133357725 -8913719 - AluSg/x SINE Alu -169 133 113 3709 214 105 34 chr9 133358384 133358505 -8912939 - Charlie1 DNA MER1_type 0 2761 2650 1635 194 11 11 chr9 133358505 133358788 -8912656 + AluJo SINE Alu 5 287 -25 3709 214 105 34 chr9 133358788 133358811 -8912633 - Charlie1 DNA MER1_type -111 2650 2630 2234 121 0 0 chr9 133358811 133359100 -8912344 - AluSx SINE Alu -23 289 1 3709 214 105 34 chr9 133359100 133359656 -8911788 - Charlie1 DNA MER1_type -131 2630 2115 1782 144 53 0 chr9 133359656 133359941 -8911503 + AluJb SINE Alu 1 300 -12 3709 214 105 34 chr9 133359941 133360137 -8911307 - Charlie1 DNA MER1_type -646 2115 1934 2019 176 0 0 chr9 133360137 133360449 -8910995 + AluJb SINE Alu 1 312 0 3709 214 105 34 chr9 133360449 133360796 -8910648 - Charlie1 DNA MER1_type -827 1934 1426 273 103 0 0 chr9 133360814 133360853 -8910591 - Charlie1 DNA MER1_type -2668 93 55 1382 166 0 5 chr9 133361634 133361857 -8909587 - AluJb SINE Alu -9 303 82 829 145 0 36 chr9 133361865 133362003 -8909441 - FLAM_C SINE Alu -10 133 1 810 153 0 53 chr9 133362030 133362180 -8909264 + FLAM_C SINE Alu 1 142 -1 2329 101 0 3 chr9 133363318 133363625 -8907819 + AluSg SINE Alu 1 306 -4 2134 139 0 0 chr9 133363716 133364010 -8907434 + AluSx SINE Alu 1 294 -18 1448 89 0 0 chr9 133364017 133364197 -8907247 + AluSq SINE Alu 131 310 -3 256 192 0 0 chr9 133364793 133364845 -8906599 + L1ME4a LINE L1 6065 6116 -5 2365 82 0 0 chr9 133366564 133366870 -8904574 - AluSc SINE Alu 0 306 1 1255 141 54 0 chr9 133367229 133367414 -8904030 + AluJb SINE Alu 3 197 -115 2188 107 0 26 chr9 133367630 133367938 -8903506 + AluSq SINE Alu 1 300 -13 217 266 142 35 chr9 133368441 133368554 -8902890 - MER5A DNA MER1_type -27 162 38 924 257 142 42 chr9 133368914 133369392 -8902052 + MLT1H1 LTR MaLR 30 555 0 1801 175 6 22 chr9 133370096 133370411 -8901033 + AluJo SINE Alu 1 310 -2 2646 55 0 3 chr9 133372992 133373304 -8898140 + AluY SINE Alu 1 311 0 1469 171 43 53 chr9 133373858 133374157 -8897287 - AluJo SINE Alu -16 296 1 1919 151 0 20 chr9 133374162 133374461 -8896983 - AluSx SINE Alu -19 293 1 1914 156 3 26 chr9 133375005 133375312 -8896132 + AluJb SINE Alu 1 300 -12 1085 154 12 0 chr9 133375315 133375477 -8895967 + AluJo/FRAM SINE Alu 136 299 -13 420 258 114 45 chr9 133375487 133375727 -8895717 + L1ME LINE L1 5338 5581 -585 2273 128 0 0 chr9 133375732 133376044 -8895400 + AluSx SINE Alu 1 312 0 2203 83 38 0 chr9 133376429 133376718 -8894726 + AluSx SINE Alu 1 300 -12 270 206 346 0 chr9 133377168 133377275 -8894169 + MIR3 SINE MIR 42 185 -23 2185 124 0 0 chr9 133377496 133377795 -8893649 + AluSc SINE Alu 3 301 -8 208 313 130 23 chr9 133378007 133378138 -8893306 - MIR SINE MIR -98 164 20 180 97 0 0 chr9 133378168 133378199 -8893245 + (A)n Simple_repeat Simple_repeat 1 31 0 2230 102 0 0 chr9 133378206 133378535 -8892909 + AluSx SINE Alu 1 329 0 985 212 0 0 chr9 133378597 133378776 -8892668 - AluJo SINE Alu -13 299 121 2118 73 0 0 chr9 133378776 133379024 -8892420 - AluY SINE Alu -63 248 1 1874 152 7 23 chr9 133379072 133379375 -8892069 + AluSx SINE Alu 1 298 -14 767 151 0 0 chr9 133379377 133379483 -8891961 - AluJo SINE Alu -201 111 6 2217 100 0 13 chr9 133380268 133380567 -8890877 + AluY SINE Alu 1 295 -16 2235 101 0 44 chr9 133381047 133381193 -8890251 + AluSq SINE Alu 1 127 -186 2333 107 0 0 chr9 133381193 133381491 -8889953 + AluSg SINE Alu 1 298 -12 2235 101 0 44 chr9 133381491 133381660 -8889784 + AluSq SINE Alu 127 302 -11 1807 172 31 3 chr9 133381690 133381981 -8889463 - AluJb SINE Alu -13 299 1 364 216 156 48 chr9 133383145 133383312 -8888132 + L1ME3A LINE L1 5986 6170 0 22 35 0 0 chr9 133383527 133383556 -8887888 + AT_rich Low_complexity Low_complexity 1 29 0 1804 88 54 61 chr9 133384007 133384301 -8887143 - AluSg SINE Alu -18 292 1 702 219 127 19 chr9 133384393 133384598 -8886846 + MIR SINE MIR 2 228 -34 704 263 220 16 chr9 133384652 133385092 -8886352 - L2 LINE L2 -67 3246 2725 446 195 190 46 chr9 133385183 133385357 -8886087 + L1ME2 LINE L1 5936 6134 -30 1682 169 0 16 chr9 133385364 133385671 -8885773 - AluJb SINE Alu -10 302 1 928 90 23 8 chr9 133385671 133385804 -8885640 - AluJb SINE Alu -177 135 1 215 185 25 111 chr9 133385809 133385852 -8885592 - MIR SINE MIR -64 144 110 1911 166 0 0 chr9 133385852 133386154 -8885290 + AluJo SINE Alu 1 302 -10 215 185 25 111 chr9 133386154 133386191 -8885253 - MIR SINE MIR -98 110 71 228 267 173 47 chr9 133386442 133386592 -8884852 + MIR SINE MIR 37 205 -57 679 178 199 24 chr9 133387120 133387140 -8884304 + L1ME2 LINE L1 5750 5765 -399 2076 100 32 23 chr9 133387140 133387449 -8883995 + AluSx SINE Alu 1 312 0 679 178 199 24 chr9 133387449 133387697 -8883747 + L1ME2 LINE L1 5765 6060 -104 422 176 221 0 chr9 133387646 133387782 -8883662 + L1MA10 LINE L1 6169 6334 0 * 1879 157 7 0 chr9 133388404 133388709 -8882735 - AluJb SINE Alu -5 307 1 2094 112 10 10 chr9 133388784 133389087 -8882357 - AluSx SINE Alu -9 303 1 319 232 13 0 chr9 133389107 133389181 -8882263 + L1MC4 LINE L1 2008 7002 -1320 24 85 0 0 chr9 133389218 133389277 -8882167 + AT_rich Low_complexity Low_complexity 1 59 0 1335 164 0 0 chr9 133389278 133389485 -8881959 - MER2 DNA MER2_type -138 207 1 220 205 0 0 chr9 133389485 133389524 -8881920 + (TATG)n Simple_repeat Simple_repeat 4 42 0 194 150 25 0 chr9 133389528 133389568 -8881876 + (CA)n Simple_repeat Simple_repeat 2 42 0 2149 113 0 0 chr9 133389991 133390284 -8881160 + AluSx SINE Alu 1 293 -19 2357 63 7 7 chr9 133390433 133390736 -8880708 + AluY SINE Alu 1 303 -8 2179 129 36 25 chr9 133390950 133391315 -8880129 + MSTB LTR MaLR 2 370 -56 1925 124 0 40 chr9 133391351 133391512 -8879932 - AluSx SINE Alu -26 286 141 2291 91 0 3 chr9 133391512 133391819 -8879625 - AluSc SINE Alu -3 306 1 1925 124 0 40 chr9 133391819 133391955 -8879489 - AluSx SINE Alu -171 141 1 1463 182 35 18 chr9 133391997 133392283 -8879161 - AluJb SINE Alu -21 291 1 613 283 79 72 chr9 133392319 133392420 -8879024 + L1ME3A LINE L1 5334 5433 -688 2444 32 0 0 chr9 133392420 133392739 -8878705 + AluY SINE Alu 1 319 0 613 283 79 72 chr9 133392739 133393081 -8878363 + L1ME3A LINE L1 5433 5783 -338 592 298 66 0 chr9 133393663 133393844 -8877600 - MIR SINE MIR -68 194 2 2070 113 0 13 chr9 133393948 133394248 -8877196 + AluSx SINE Alu 1 296 -16 424 317 92 12 chr9 133394475 133394724 -8876720 + MLT1L LTR MaLR 347 615 0 2434 57 0 0 chr9 133395030 133395327 -8876117 - AluY SINE Alu -14 297 1 257 241 250 18 chr9 133395358 133395470 -8875974 - MIR SINE MIR -77 185 48 * 460 308 184 23 chr9 133395466 133395765 -8875679 + L2 LINE L2 2910 3256 -16 2169 93 7 0 chr9 133396029 133396329 -8875115 + AluSq SINE Alu 5 306 -7 1418 160 20 8 chr9 133396399 133396649 -8874795 + AluJb SINE Alu 1 253 -59 2309 78 0 0 chr9 133397131 133397426 -8874018 + AluSg1 SINE Alu 1 295 -14 2232 98 0 13 chr9 133397665 133397981 -8873463 + AluSx SINE Alu 1 312 0 282 274 78 29 chr9 133398201 133398303 -8873141 + L2 LINE L2 3150 3256 -16 451 279 77 100 chr9 133398834 133399154 -8872290 - L1MEd LINE L1 -5561 558 253 2196 96 3 6 chr9 133399154 133399467 -8871977 + AluSx SINE Alu 1 312 0 451 279 77 100 chr9 133399467 133399666 -8871778 - L1MEd LINE L1 -5866 253 51 233 289 36 24 chr9 133399637 133399720 -8871724 + L1ME LINE L1 3 86 -5984 * 732 188 76 46 chr9 133399786 133399983 -8871461 - MER105 DNA DNA -1 203 1 339 273 39 78 chr9 133400080 133400311 -8871133 + L1ME3A LINE L1 5939 6160 -10 1576 117 26 94 chr9 133400604 133400692 -8870752 + AluSx SINE Alu 1 93 -219 2297 67 6 10 chr9 133400692 133401004 -8870440 + AluY SINE Alu 1 311 0 1576 117 26 94 chr9 133401004 133401223 -8870221 + AluSx SINE Alu 93 287 -25 2004 113 0 3 chr9 133401238 133401562 -8869882 + AluSq SINE Alu 13 335 0 186 334 85 19 chr9 133401566 133401769 -8869675 - MIR SINE MIR -1 261 45 1567 168 43 16 chr9 133401884 133402188 -8869256 + AluJb SINE Alu 1 312 0 1575 182 10 7 chr9 133402193 133402501 -8868943 + AluJo SINE Alu 1 309 -3 1945 143 0 0 chr9 133402608 133402909 -8868535 + AluSx SINE Alu 1 301 -11 1461 167 24 27 chr9 133402930 133403223 -8868221 + AluJb SINE Alu 21 312 0 2062 127 10 0 chr9 133403230 133403538 -8867906 + AluSx SINE Alu 1 311 -1 580 302 86 9 chr9 133403921 133404143 -8867301 - MIR SINE MIR -21 241 3 1820 129 24 17 chr9 133404173 133404468 -8866976 + AluSx SINE Alu 1 297 -15 235 200 230 40 chr9 133404759 133404859 -8866585 + Charlie8 DNA MER1_type 37 155 -2262 1893 136 24 0 chr9 133405173 133405460 -8865984 + AluSx SINE Alu 1 294 -18 297 353 78 13 chr9 133405783 133405936 -8865508 + MIR SINE MIR 100 262 0 2480 34 0 3 chr9 133406213 133406509 -8864935 - AluY SINE Alu -16 295 1 297 75 0 0 chr9 133406787 133406827 -8864617 + (CAT)n Simple_repeat Simple_repeat 2 41 0 2093 107 27 0 chr9 133406889 133407188 -8864256 - AluSq SINE Alu -6 307 1 1963 138 0 3 chr9 133407423 133407728 -8863716 - AluSx SINE Alu -8 304 1 2058 85 51 3 chr9 133407748 133408043 -8863401 - AluSq SINE Alu -4 309 1 1570 232 74 11 chr9 133408154 133408589 -8862855 - MLT1C LTR MaLR 0 467 6 2797 6 0 9 chr9 133408712 133409031 -8862413 + AluYb8 SINE Alu 1 316 -2 1879 133 13 26 chr9 133409099 133409408 -8862036 + AluSx SINE Alu 1 305 -7 30 45 0 0 chr9 133409669 133409713 -8861731 + AT_rich Low_complexity Low_complexity 1 44 0 2326 78 0 0 chr9 133409722 133410015 -8861429 + AluY SINE Alu 1 293 -18 1293 167 0 45 chr9 133410226 133410490 -8860954 + AluJo SINE Alu 45 296 -16 567 94 0 0 chr9 133410512 133410608 -8860836 + (CAGG)n Simple_repeat Simple_repeat 2 97 0 280 130 87 0 chr9 133410671 133410717 -8860727 + L2 LINE L2 3263 3312 -1 2022 99 11 7 chr9 133410748 133411081 -8860363 - AluSx SINE Alu 0 334 1 338 210 86 0 chr9 133411094 133411175 -8860269 - MIR SINE MIR -56 206 119 1987 116 7 10 chr9 133411259 133411552 -8859892 - AluSx SINE Alu -20 292 1 264 172 78 31 chr9 133411555 133411619 -8859825 + L2 LINE L2 2985 3051 -221 763 287 139 36 chr9 133411699 133412117 -8859327 + L2 LINE L2 2851 3311 -2 984 202 12 0 chr9 133412630 133412803 -8858641 + FAM SINE Alu 1 175 0 2002 111 0 0 chr9 133412850 133413129 -8858315 + AluSx SINE Alu 1 279 -33 2149 115 3 3 chr9 133413174 133413479 -8857965 + AluSq SINE Alu 2 306 -7 429 259 108 48 chr9 133413479 133413703 -8857741 + L1MC5 LINE L1 7522 7764 -197 1914 127 13 3 chr9 133413703 133414003 -8857441 - AluSx SINE Alu -9 303 1 429 259 108 48 chr9 133414003 133414029 -8857415 + L1MC5 LINE L1 7764 7787 -174 * 2870 228 25 25 chr9 133414012 133414448 -8856996 + L1MB7 LINE L1 5469 5907 -277 2085 119 0 0 chr9 133414448 133414750 -8856694 + AluSx SINE Alu 1 302 -10 2870 228 25 25 chr9 133414750 133415028 -8856416 + L1MB7 LINE L1 5906 6183 -1 21 36 0 0 chr9 133415056 133415084 -8856360 + AT_rich Low_complexity Low_complexity 1 28 0 2144 113 7 0 chr9 133415084 133415393 -8856051 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr9 133415517 133415542 -8855902 + AT_rich Low_complexity Low_complexity 1 25 0 463 228 40 0 chr9 133415565 133415666 -8855778 + L1MC5 LINE L1 7809 7913 -48 1261 183 35 67 chr9 133415691 133416003 -8855441 - AluJo SINE Alu 0 302 1 1319 86 99 59 chr9 133416191 133416257 -8855187 - MER30 DNA MER1_type 0 230 168 2293 78 0 0 chr9 133416257 133416550 -8854894 - AluY SINE Alu -18 293 1 1319 86 99 59 chr9 133416550 133416704 -8854740 - MER30 DNA MER1_type -62 168 1 2147 110 7 0 chr9 133416714 133417024 -8854420 - AluSx SINE Alu 0 312 1 1947 109 3 11 chr9 133417219 133417531 -8853913 - AluSx SINE Alu 0 310 1 1118 43 0 0 chr9 133417646 133417784 -8853660 - AluYa5 SINE Alu -10 301 164 1673 67 13 9 chr9 133417784 133418008 -8853436 - AluY SINE Alu -86 225 1 1478 157 33 43 chr9 133418095 133418395 -8853049 - AluJb SINE Alu -13 299 3 438 236 159 42 chr9 133419763 133419981 -8851463 - MIR SINE MIR -3 259 8 2187 81 0 7 chr9 133420067 133420362 -8851082 - AluSx SINE Alu -19 293 1 1865 120 3 17 chr9 133420458 133420757 -8850687 + AluSx SINE Alu 1 295 -17 1647 170 27 0 chr9 133421359 133421659 -8849785 - AluSx SINE Alu -2 310 3 22 0 0 0 chr9 133421728 133421750 -8849694 + AT_rich Low_complexity Low_complexity 1 22 0 930 96 7 0 chr9 133421859 133421994 -8849450 + AluJb SINE Alu 1 136 -176 2124 122 0 0 chr9 133421994 133422290 -8849154 + AluSx SINE Alu 1 296 -16 842 145 44 101 chr9 133422318 133422546 -8848898 + AluJo SINE Alu 85 299 -13 765 141 118 0 chr9 133423186 133423321 -8848123 + FRAM SINE Alu 20 170 -6 378 287 100 52 chr9 133423409 133423467 -8847977 - MIR SINE MIR -6 256 202 1567 161 49 3 chr9 133423467 133423753 -8847691 - AluJb SINE Alu -3 309 11 378 287 100 52 chr9 133423753 133423792 -8847652 - MIR SINE MIR -60 202 166 1541 189 34 0 chr9 133423792 133424088 -8847356 - AluJb SINE Alu -6 306 1 378 287 100 52 chr9 133424088 133424116 -8847328 - MIR SINE MIR -96 166 141 2297 57 3 3 chr9 133424116 133424414 -8847030 + AluY SINE Alu 1 298 -13 2338 48 31 0 chr9 133424417 133424708 -8846736 + AluY SINE Alu 1 300 -11 378 287 100 52 chr9 133424708 133424806 -8846638 - MIR SINE MIR -122 140 16 428 302 34 20 chr9 133424815 133424852 -8846592 - MIR SINE MIR -71 191 156 2059 112 16 0 chr9 133424852 133425157 -8846287 - AluSx SINE Alu -2 310 1 428 302 34 20 chr9 133425157 133425268 -8846176 - MIR SINE MIR -106 156 41 586 265 34 14 chr9 133425538 133425558 -8845886 - MER21B LTR ERV1 -3 860 842 2193 112 0 0 chr9 133425558 133425862 -8845582 - AluSg SINE Alu -6 304 1 586 265 34 14 chr9 133425862 133425988 -8845456 - MER21B LTR ERV1 -21 842 711 420 178 19 37 chr9 133425989 133426096 -8845348 - AluJb SINE Alu -7 305 201 2824 211 82 61 chr9 133426098 133426399 -8845045 - MER21B LTR ERV1 -163 700 407 1914 99 0 122 chr9 133426399 133426743 -8844701 - AluSx SINE Alu 0 302 1 2824 211 82 61 chr9 133426743 133427127 -8844317 - MER21B LTR ERV1 -456 407 1 2129 94 7 3 chr9 133428244 133428541 -8842903 - AluSx SINE Alu -14 298 1 1754 148 0 17 chr9 133428561 133428851 -8842593 - AluJo SINE Alu -25 287 3 33 56 0 0 chr9 133429864 133429918 -8841526 + GC_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr9 133429981 133430010 -8841434 + GC_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr9 133430706 133430742 -8840702 + GC_rich Low_complexity Low_complexity 1 36 0 722 164 8 15 chr9 133432058 133432192 -8839252 + FLAM_C SINE Alu 1 133 0 426 220 118 21 chr9 133432229 133432415 -8839029 + L1MC5 LINE L1 7725 7928 -33 2062 99 0 20 chr9 133432550 133432852 -8838592 - AluSx SINE Alu -10 302 7 2098 119 0 3 chr9 133433497 133433800 -8837644 - AluSq SINE Alu -9 304 3 2254 77 7 13 chr9 133434496 133434795 -8836649 + AluSg1 SINE Alu 1 297 -12 2518 40 0 17 chr9 133434820 133435122 -8836322 - AluY SINE Alu -14 297 1 251 218 0 0 chr9 133435266 133435321 -8836123 + L2 LINE L2 3259 3313 0 584 115 58 29 chr9 133435436 133435540 -8835904 - L1MC1 LINE L1 0 6333 6227 2081 117 20 10 chr9 133435821 133436120 -8835324 - AluSx SINE Alu -10 302 1 2518 63 0 0 chr9 133436131 133436431 -8835013 - AluY SINE Alu -11 300 1 2470 80 3 0 chr9 133437228 133437530 -8833914 - AluSq SINE Alu -10 303 1 326 293 10 0 chr9 133437573 133437672 -8833772 - MIR SINE MIR -12 250 151 276 356 88 12 chr9 133437760 133437920 -8833524 - LTR16B LTR ERVL -189 275 104 1739 144 0 8 chr9 133438063 133438319 -8833125 - AluJb SINE Alu -47 265 12 948 197 25 121 chr9 133438715 133438865 -8832579 - AluYb8 SINE Alu -33 285 122 2248 90 28 0 chr9 133438865 133439154 -8832290 - AluY SINE Alu -14 297 1 2202 75 0 78 chr9 133439162 133439484 -8831960 - AluY SINE Alu -14 297 1 948 197 25 121 chr9 133439484 133439639 -8831805 - AluYb8 SINE Alu -203 115 1 1915 162 0 13 chr9 133440724 133441027 -8830417 + AluJo SINE Alu 1 299 -13 2170 106 0 7 chr9 133441233 133441543 -8829901 + AluSg SINE Alu 1 308 0 2378 97 0 0 chr9 133442742 133443041 -8828403 - AluSx SINE Alu -13 299 1 1776 160 0 0 chr9 133443224 133443492 -8827952 - AluJo SINE Alu -44 268 1 1418 162 162 0 chr9 133443780 133444039 -8827405 + AluJb SINE Alu 1 301 -1 419 271 162 46 chr9 133444058 133444359 -8827085 - L2 LINE L2 -32 3281 2234 916 188 0 48 chr9 133444938 133445124 -8826320 + MLT1G1 LTR MaLR 1 177 -418 351 233 27 0 chr9 133445185 133445258 -8826186 + FLAM SINE Alu 43 117 -16 1368 244 81 38 chr9 133445266 133445663 -8825781 + MLT1G1 LTR MaLR 182 595 0 1907 137 3 45 chr9 133446210 133446523 -8824921 - AluJb SINE Alu -12 300 1 2159 126 3 0 chr9 133446680 133446981 -8824463 - AluSx SINE Alu -10 302 1 645 232 113 0 chr9 133447017 133447185 -8824259 + MIR SINE MIR 2 188 -74 2439 84 0 0 chr9 133447254 133447552 -8823892 - AluSx SINE Alu -14 298 1 240 274 42 42 chr9 133447579 133447674 -8823770 + L3 LINE CR1 1463 1557 -20 2391 81 0 0 chr9 133448003 133448286 -8823158 - AluSx SINE Alu -19 293 11 1343 115 48 147 chr9 133448759 133449071 -8822373 - AluJo SINE Alu -31 281 1 693 145 26 0 chr9 133450190 133450307 -8821137 - FLAM_C SINE Alu 0 143 24 1057 151 0 64 chr9 133450307 133450525 -8820919 + AluJb SINE Alu 90 293 -19 2333 91 3 7 chr9 133450688 133450985 -8820459 + AluSx SINE Alu 1 296 -16 253 100 0 0 chr9 133450985 133451025 -8820419 + L1MB5 LINE L1 6134 6173 -1 1997 139 10 0 chr9 133451036 133451324 -8820120 + AluJb SINE Alu 1 291 -21 2189 109 0 7 chr9 133452685 133452989 -8818455 + AluSx SINE Alu 1 302 -10 396 0 0 0 chr9 133453337 133453384 -8818060 + AluY SINE Alu 1 47 -255 354 158 0 0 chr9 133453382 133453439 -8818005 + Alu SINE Alu 246 302 0 * 716 75 0 0 chr9 133453876 133453970 -8817474 - AluSc SINE Alu -11 298 205 1644 167 7 25 chr9 133453970 133454252 -8817192 - AluSx SINE Alu -35 277 1 653 164 0 0 chr9 133454453 133454557 -8816887 + AluSq/x SINE Alu 2 105 -207 329 93 37 37 chr9 133454557 133454645 -8816799 + Alu SINE Alu 228 315 0 274 224 147 35 chr9 133454738 133454854 -8816590 + MIR SINE MIR 29 157 -105 359 149 0 0 chr9 133454855 133454922 -8816522 + L1MB3 LINE L1 6098 6164 -19 2472 76 0 3 chr9 133454985 133455286 -8816158 + AluY SINE Alu 1 300 -11 189 0 0 0 chr9 133455306 133455327 -8816117 + (A)n Simple_repeat Simple_repeat 1 21 0 2158 122 7 0 chr9 133455357 133455651 -8815793 - AluSx SINE Alu -16 296 1 713 172 0 23 chr9 133456107 133456235 -8815209 - FLAM_C SINE Alu -8 125 1 287 211 70 0 chr9 133456251 133456322 -8815122 + L2 LINE L2 3201 3276 -37 2350 95 3 0 chr9 133456433 133456737 -8814707 - AluSp SINE Alu -8 305 1 879 162 3 25 chr9 133456886 133457048 -8814396 - MLT1A1 LTR MaLR -220 145 1 21 0 0 0 chr9 133457048 133457069 -8814375 + AT_rich Low_complexity Low_complexity 1 21 0 327 297 52 19 chr9 133457110 133457257 -8814187 + L1M LINE L1 5265 5419 -702 1739 144 0 19 chr9 133457257 133457544 -8813900 + AluJb SINE Alu 34 312 0 471 264 16 8 chr9 133457921 133458046 -8813398 + L2 LINE L2 3188 3313 0 2398 109 0 0 chr9 133458647 133458959 -8812485 + AluSx SINE Alu 1 312 0 1319 185 152 1 chr9 133459178 133459506 -8811938 - MSTD LTR MaLR 0 396 1 811 223 166 57 chr9 133459506 133459909 -8811535 - L1ME LINE L1 -421 5741 5295 935 136 0 0 chr9 133459919 133460051 -8811393 + FLAM_C SINE Alu 1 132 -11 902 266 26 50 chr9 133460057 133460260 -8811184 - L1ME LINE L1 -858 5288 5082 2236 92 0 3 chr9 133460260 133460543 -8810901 + AluSg SINE Alu 1 282 -28 252 0 0 0 chr9 133460547 133460575 -8810869 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 902 266 26 50 chr9 133460575 133460783 -8810661 - L1ME LINE L1 -1067 5079 4882 210 118 0 0 chr9 133460785 133460819 -8810625 + (ATG)n Simple_repeat Simple_repeat 2 35 0 625 277 74 0 chr9 133460822 133461053 -8810391 - MIR SINE MIR -7 255 8 817 258 68 35 chr9 133461096 133461442 -8810002 - L1ME LINE L1 -1300 4846 4480 1707 183 30 35 chr9 133461442 133461809 -8809635 - MLT1A1 LTR MaLR 0 365 1 817 258 68 35 chr9 133461809 133461919 -8809525 - L1ME LINE L1 -1666 4480 4375 251 28 28 0 chr9 133461919 133461955 -8809489 + (TA)n Simple_repeat Simple_repeat 1 37 0 1414 85 0 0 chr9 133461955 133462132 -8809312 - AluY SINE Alu -2 309 133 202 278 28 0 chr9 133462324 133462396 -8809048 + L2 LINE L2 3232 3305 -8 615 230 11 51 chr9 133462423 133462601 -8808843 - MLT1L LTR MaLR -27 588 418 1050 120 0 0 chr9 133462641 133462783 -8808661 + AluSq/x SINE Alu 1 142 -170 227 316 26 0 chr9 133462791 133462867 -8808577 - MLT1L LTR MaLR -338 277 200 1991 116 9 57 chr9 133463199 133463375 -8808069 - AluSx SINE Alu -9 303 147 2235 116 0 3 chr9 133463375 133463678 -8807766 - AluSc SINE Alu -7 302 1 1991 116 9 57 chr9 133463678 133463819 -8807625 - AluSx SINE Alu -165 147 1 1763 135 10 33 chr9 133464831 133465135 -8806309 - AluJb SINE Alu -14 298 2 2140 89 68 0 chr9 133465184 133465464 -8805980 - AluSx SINE Alu -13 299 1 2084 129 6 25 chr9 133465929 133466247 -8805197 - AluJb SINE Alu 0 312 1 2206 114 0 13 chr9 133466507 133466678 -8804766 - AluSx SINE Alu -8 304 137 1678 112 0 0 chr9 133466678 133466902 -8804542 - AluSc SINE Alu -3 306 83 2206 114 0 13 chr9 133466902 133467038 -8804406 - AluSx SINE Alu -175 137 1 2402 87 0 0 chr9 133467558 133467857 -8803587 + AluY SINE Alu 1 299 -12 1162 123 0 0 chr9 133467954 133468109 -8803335 - AluSg/x SINE Alu -21 289 135 2394 88 10 0 chr9 133468110 133468415 -8803029 - AluSx SINE Alu -4 308 1 1171 131 0 0 chr9 133468922 133469082 -8802362 - AluSg SINE Alu -16 294 135 2376 72 0 3 chr9 133469264 133469557 -8801887 - AluY SINE Alu -19 292 1 1793 161 0 46 chr9 133469565 133469889 -8801555 - AluSx SINE Alu -3 309 1 1072 90 0 8 chr9 133469889 133470023 -8801421 - AluSg SINE Alu -177 133 1 1942 206 34 12 chr9 133470468 133470886 -8800558 - MSTB1 LTR MaLR -5 427 1 2208 95 16 23 chr9 133470990 133471151 -8800293 - AluSx SINE Alu -10 302 142 2244 98 3 20 chr9 133471151 133471457 -8799987 - AluSx SINE Alu -11 301 1 2208 95 16 23 chr9 133471457 133471599 -8799845 - AluSx SINE Alu -170 142 1 1510 221 50 36 chr9 133471633 133471858 -8799586 + Charlie1a DNA MER1_type 2 236 -2525 1828 103 80 4 chr9 133471858 133472147 -8799297 - AluSg SINE Alu 0 309 1 1510 221 50 36 chr9 133472147 133472282 -8799162 + Charlie1a DNA MER1_type 236 368 -1087 4577 170 40 43 chr9 133472312 133472670 -8798774 + Charlie1a DNA MER1_type 441 799 -1962 2123 128 0 25 chr9 133472670 133472990 -8798454 - AluSx SINE Alu 0 312 1 4577 170 40 43 chr9 133472990 133473586 -8797858 + Charlie1a DNA MER1_type 799 1394 -1367 2085 124 0 10 chr9 133473586 133473885 -8797559 - AluSx SINE Alu -16 296 1 4577 170 40 43 chr9 133473885 133473925 -8797519 + Charlie1a DNA MER1_type 1394 1433 -22 2144 102 3 35 chr9 133474664 133474977 -8796467 - AluSq SINE Alu -10 303 1 2067 136 0 29 chr9 133474978 133475294 -8796150 - AluSx SINE Alu -5 307 1 1055 151 0 12 chr9 133475331 133475503 -8795941 - FRAM SINE Alu -11 165 1 21 0 0 0 chr9 133475795 133475816 -8795628 + AT_rich Low_complexity Low_complexity 1 21 0 2076 120 3 14 chr9 133475865 133476156 -8795288 - AluSx SINE Alu -24 288 1 1778 168 20 3 chr9 133476204 133476508 -8794936 + AluJb SINE Alu 1 309 -3 264 200 17 50 chr9 133477514 133477574 -8793870 - AluSp/q SINE Alu -10 293 236 * 277 175 88 88 chr9 133477557 133477637 -8793807 - AluJo SINE Alu -136 166 87 191 267 100 0 chr9 133477683 133477773 -8793671 + L2 LINE L2 3173 3271 -1 2220 245 43 18 chr9 133478617 133479242 -8792202 - L1ME3A LINE L1 -5 6165 5525 2384 93 0 0 chr9 133479274 133479574 -8791870 + AluSx SINE Alu 1 300 -12 725 126 0 17 chr9 133479583 133479702 -8791742 + FLAM_C SINE Alu 1 117 -16 2357 96 6 6 chr9 133479942 133480254 -8791190 - AluSx SINE Alu 0 312 1 554 300 121 24 chr9 133480258 133480555 -8790889 + L2 LINE L2 2305 2630 -684 233 219 219 0 chr9 133480623 133480746 -8790698 + L2 LINE L2 2793 2942 -372 2017 101 0 24 chr9 133480871 133481158 -8790286 - AluSg SINE Alu 0 310 31 1653 181 112 45 chr9 133481160 133481607 -8789837 + L1MB8 LINE L1 5702 6178 0 2328 96 7 3 chr9 133481671 133481974 -8789470 - AluSg SINE Alu -6 304 1 970 165 13 13 chr9 133481976 133482134 -8789310 - AluJb SINE Alu -18 294 137 1780 165 3 19 chr9 133482271 133482586 -8788858 - AluJo SINE Alu -2 310 1 2300 113 0 0 chr9 133482834 133483135 -8788309 - AluSx SINE Alu -11 301 1 1889 161 0 3 chr9 133483432 133483737 -8787707 + AluJb SINE Alu 1 304 -8 2242 108 7 0 chr9 133483947 133484253 -8787191 + AluSq SINE Alu 1 308 -5 305 273 126 35 chr9 133684685 133684828 -8586616 + MIR SINE MIR 107 262 0 402 207 15 7 chr9 133685395 133685530 -8585914 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 603 224 0 0 chr9 133685542 133685716 -8585728 + (TCCA)n Simple_repeat Simple_repeat 2 175 0 1200 125 3 0 chr9 133685737 133686080 -8585364 + (TCCA)n Simple_repeat Simple_repeat 1 344 0 733 153 268 13 chr9 133686914 133687071 -8584373 - AluJb SINE Alu -29 283 87 572 342 11 0 chr9 133687791 133687981 -8583463 - MER117 DNA MER1_type -3 194 3 381 209 38 19 chr9 133688227 133688332 -8583112 + MER103 DNA DNA 55 161 -5 191 280 67 0 chr9 133688921 133688996 -8582448 + MIR SINE MIR 162 241 -21 334 314 109 38 chr9 133689188 133689427 -8582017 + L2 LINE L2 2804 3059 -213 1998 108 56 63 chr9 133690702 133691080 -8580364 + THE1C LTR MaLR 1 375 0 574 312 25 63 chr9 133691396 133691686 -8579758 + L2 LINE L2 2920 3195 -77 2196 95 3 3 chr9 133691686 133691990 -8579454 - AluSx SINE Alu -8 304 1 574 312 25 63 chr9 133691990 133692064 -8579380 + L2 LINE L2 3195 3270 -2 856 276 143 15 chr9 133692317 133692897 -8578547 + L2 LINE L2 2230 3306 -7 2119 74 81 0 chr9 133692897 133693182 -8578262 + AluSx SINE Alu 1 308 -4 467 284 144 13 chr9 133693194 133693423 -8578021 - L2 LINE L2 -8 3264 3006 425 218 8 65 chr9 133695239 133695363 -8576081 + L1MD2 LINE L1 6240 6356 -3 522 336 9 14 chr9 133695430 133695644 -8575800 + MIR SINE MIR 2 214 -48 2214 121 0 3 chr9 133695744 133696227 -8575217 - AluSx SINE Alu 0 482 1 440 316 115 11 chr9 133696329 133696503 -8574941 - MIR SINE MIR -70 192 1 1323 218 4 0 chr9 133697133 133697413 -8574031 + MER33 DNA MER1_type 22 302 -22 260 261 114 0 chr9 133697952 133698040 -8573404 - MIR SINE MIR -67 141 44 1101 194 7 14 chr9 133698655 133699091 -8572353 + (TGGA)n Simple_repeat Simple_repeat 1 433 0 335 270 73 0 chr9 133699343 133699480 -8571964 + GA-rich Low_complexity Low_complexity 1 147 0 2298 49 0 3 chr9 133700803 133701087 -8570357 + AluY SINE Alu 12 294 -17 498 260 20 36 chr9 133701969 133702091 -8569353 - L1M4 LINE L1 -1701 4445 4326 1419 190 38 7 chr9 133702091 133702380 -8569064 - AluJb SINE Alu -14 298 1 498 260 20 36 chr9 133702380 133702453 -8568991 - L1M4 LINE L1 -1820 4326 4253 2081 103 20 0 chr9 133702468 133702760 -8568684 - AluSq SINE Alu -15 298 1 1566 183 17 10 chr9 133702760 133703055 -8568389 - AluJb SINE Alu -15 297 1 2009 141 0 0 chr9 133703128 133703426 -8568018 - AluSx SINE Alu -13 299 2 2491 43 0 0 chr9 133703434 133703733 -8567711 - AluY SINE Alu -12 299 1 808 130 0 9 chr9 133703755 133703870 -8567574 - AluJb SINE Alu -187 125 12 1793 129 18 7 chr9 133703935 133704233 -8567211 - AluSx SINE Alu 0 301 1 929 149 0 0 chr9 133704799 133704981 -8566463 + AluJb SINE Alu 135 316 0 1999 105 0 41 chr9 133705547 133705873 -8565571 + AluSx SINE Alu 1 314 0 2479 145 43 19 chr9 133705873 133706342 -8565102 + L1MB4 LINE L1 5678 6157 -23 591 188 89 0 chr9 133706353 133706465 -8564979 - FLAM_A SINE Alu -10 123 2 2120 110 0 0 chr9 133706469 133706760 -8564684 - AluSg SINE Alu -13 297 7 2111 120 3 3 chr9 133706767 133707066 -8564378 - AluSq SINE Alu -14 299 1 1436 163 54 32 chr9 133707128 133707432 -8564012 + AluJo SINE Alu 1 310 0 2182 122 0 0 chr9 133707599 133707911 -8563533 - AluSx SINE Alu 0 312 1 205 329 40 0 chr9 133708386 133708462 -8562982 - MIR SINE MIR -97 165 87 489 204 21 0 chr9 133708472 133708565 -8562879 - AluSc SINE Alu -11 298 204 1519 192 27 14 chr9 133708571 133708868 -8562576 - AluSx SINE Alu -11 301 1 900 149 11 81 chr9 133708870 133709044 -8562400 - FRAM SINE Alu -4 162 1 312 27 0 0 chr9 133709050 133709087 -8562357 + (GA)n Simple_repeat Simple_repeat 2 38 0 968 232 46 0 chr9 133709181 133709418 -8562026 - MLT1E1 LTR MaLR -2 652 405 760 205 24 30 chr9 133709478 133709688 -8561756 - MLT1E1 LTR MaLR -420 204 1 699 133 9 0 chr9 133709712 133709817 -8561627 + AluSp/q SINE Alu 193 298 -15 355 270 100 10 chr9 133709865 133709965 -8561479 + MER81 DNA DNA 1 109 -5 2105 112 3 25 chr9 133709991 133710305 -8561139 + AluSq SINE Alu 1 307 -6 1520 168 8 19 chr9 133710327 133710595 -8560849 + AluJb SINE Alu 1 265 -47 2522 106 6 0 chr9 133710595 133710952 -8560492 + THE1B LTR MaLR 6 364 0 243 67 44 0 chr9 133710952 133710997 -8560447 + AluJb SINE Alu 256 302 0 2059 119 0 17 chr9 133711207 133711339 -8560105 + AluSq SINE Alu 1 134 -179 2331 94 0 0 chr9 133711339 133711646 -8559798 + AluSx SINE Alu 6 312 0 2059 119 0 17 chr9 133711646 133711815 -8559629 + AluSq SINE Alu 134 297 -16 1912 89 0 0 chr9 133711816 133712062 -8559382 + AluSg SINE Alu 52 297 -13 2022 126 7 0 chr9 133712320 133712622 -8558822 - AluSx SINE Alu -8 304 1 210 143 0 0 chr9 133712725 133712760 -8558684 + (A)n Simple_repeat Simple_repeat 1 35 0 2115 126 0 3 chr9 133713284 133713593 -8557851 - AluSx SINE Alu -4 308 1 1070 149 19 53 chr9 133713661 133713869 -8557575 + Tigger2a DNA MER2_type 2 202 -232 1893 90 19 15 chr9 133713869 133714137 -8557307 - AluJb SINE Alu -10 302 34 369 162 0 0 chr9 133714167 133714235 -8557209 + CT-rich Low_complexity Low_complexity 4 71 0 1558 116 54 4 chr9 133714250 133714492 -8556952 - AluSx SINE Alu -58 254 1 2156 100 0 0 chr9 133714496 133714785 -8556659 - AluSq SINE Alu -20 293 5 253 164 0 15 chr9 133714796 133714863 -8556581 + Tigger2a DNA MER2_type 212 277 -167 597 163 0 0 chr9 133714872 133714964 -8556480 + AluJ/FLAM SINE Alu 3 94 -218 1548 173 35 7 chr9 133715148 133715437 -8556007 - AluJb SINE Alu -15 297 1 2009 104 42 0 chr9 133715598 133715885 -8555559 + AluSx SINE Alu 1 299 -13 787 161 0 0 chr9 133716023 133716141 -8555303 - FLAM_C SINE Alu -15 118 1 2182 112 0 0 chr9 133716363 133716666 -8554778 - AluSx SINE Alu -9 303 1 744 258 131 79 chr9 133716667 133717226 -8554218 - MLT1G LTR MaLR -7 583 1 2016 115 3 26 chr9 133717428 133717740 -8553704 + AluSx SINE Alu 1 305 -7 510 284 87 22 chr9 133717747 133717930 -8553514 - MIR SINE MIR -29 233 39 1834 252 68 25 chr9 133717994 133718505 -8552939 + MLT1G LTR MaLR 1 533 -57 1909 101 0 73 chr9 133718943 133719136 -8552308 - AluJb SINE Alu -5 307 144 2270 77 0 3 chr9 133719136 133719433 -8552011 - AluSg SINE Alu -14 296 1 1909 101 0 73 chr9 133719433 133719556 -8551888 - AluJb SINE Alu -168 144 14 2296 91 3 10 chr9 133719927 133720234 -8551210 + AluSp SINE Alu 1 305 -8 2209 97 0 3 chr9 133720586 133720885 -8550559 - AluSx SINE Alu -14 298 1 241 143 0 0 chr9 133720886 133720928 -8550516 + MER57B LTR ERV1 393 434 0 197 245 41 0 chr9 133721552 133721601 -8549843 + MIR SINE MIR 79 129 -133 2282 93 3 3 chr9 133722257 133722569 -8548875 + AluSx SINE Alu 1 312 0 342 254 42 33 chr9 133722583 133722738 -8548706 + MIR SINE MIR 2 163 -67 1743 130 43 14 chr9 133722837 133723114 -8548330 + AluJb SINE Alu 1 285 -27 219 83 0 0 chr9 133723143 133723160 -8548284 + (T)n Simple_repeat Simple_repeat 1 17 -19 2129 104 0 13 chr9 133723160 133723459 -8547985 + AluSx SINE Alu 1 295 -17 219 83 0 0 chr9 133723459 133723477 -8547967 + (T)n Simple_repeat Simple_repeat 16 36 0 1089 177 84 8 chr9 133723518 133723755 -8547689 + L1MB3 LINE L1 5686 5940 -243 371 147 0 4 chr9 133723757 133723825 -8547619 + Alu SINE Alu 1 51 -248 * 1320 156 4 0 chr9 133723816 133724041 -8547403 - MER57A LTR ERV1 -177 226 1 342 229 21 21 chr9 133724051 133724147 -8547297 - MLT1J1 LTR MaLR -63 383 288 891 199 27 5 chr9 133724151 133724337 -8547107 - MLT1J2 LTR MaLR -249 201 12 1728 160 0 14 chr9 133724365 133724678 -8546766 - AluSp SINE Alu 0 309 1 254 130 0 0 chr9 133724688 133724734 -8546710 - MADE1 DNA Mariner -34 46 1 429 286 105 0 chr9 133724734 133724867 -8546577 - MIR SINE MIR -114 148 2 728 259 73 5 chr9 133724947 133725152 -8546292 + MIR SINE MIR 18 236 -26 403 138 0 15 chr9 133725342 133725407 -8546037 + LTR2B LTR ERV1 427 490 0 2089 101 22 35 chr9 133725609 133725925 -8545519 + AluSx SINE Alu 1 312 0 2184 91 7 16 chr9 133726340 133726649 -8544795 + AluSg SINE Alu 1 306 -4 1573 160 7 33 chr9 133726803 133727103 -8544341 - MLT1C LTR MaLR 0 467 176 1254 120 0 11 chr9 133727111 133727295 -8544149 - AluSg/x SINE Alu -21 291 110 702 188 30 0 chr9 133727344 133727477 -8543967 - MSTD LTR MaLR 0 396 260 520 204 83 72 chr9 133727477 133727658 -8543786 - FRAM SINE Alu -1 175 1 937 177 0 6 chr9 133727662 133727826 -8543618 - AluJb SINE Alu -14 298 136 544 202 65 89 chr9 133727826 133728037 -8543407 - MLT1A1 LTR MaLR -123 334 1 2272 98 0 0 chr9 133728039 133728345 -8543099 + AluSq SINE Alu 1 306 -7 290 277 54 68 chr9 133728449 133728597 -8542847 + L2 LINE L2 3124 3269 -3 897 113 0 0 chr9 133728641 133728765 -8542679 + FLAM_C SINE Alu 1 124 -19 189 74 0 0 chr9 133729531 133729558 -8541886 + (TC)n Simple_repeat Simple_repeat 2 28 0 423 0 0 0 chr9 133729652 133729699 -8541745 + (CA)n Simple_repeat Simple_repeat 1 47 0 234 0 0 0 chr9 133729829 133729855 -8541589 + (CAG)n Simple_repeat Simple_repeat 3 28 0 303 49 0 0 chr9 133730540 133730581 -8540863 + (TC)n Simple_repeat Simple_repeat 1 41 0 837 152 0 0 chr9 133730800 133730932 -8540512 - FRAM SINE Alu -23 153 22 185 184 26 0 chr9 133731086 133731124 -8540320 + L2 LINE L2 3272 3310 -3 316 336 14 21 chr9 133731273 133731416 -8540028 + MIR SINE MIR 7 148 -114 254 297 135 18 chr9 133731578 133731689 -8539755 - L2 LINE L2 -3 3310 3187 * 583 326 23 19 chr9 133731667 133731882 -8539562 - MIR SINE MIR -34 228 13 877 147 0 22 chr9 133731891 133732027 -8539417 - FLAM_C SINE Alu 0 133 1 2384 81 3 0 chr9 133732067 133732376 -8539068 - AluSg SINE Alu 0 310 1 524 306 101 17 chr9 133732376 133732861 -8538583 + L2 LINE L2 2687 3214 -58 497 183 10 0 chr9 133733002 133733106 -8538338 + CT-rich Low_complexity Low_complexity 2 106 0 1462 153 8 0 chr9 133733110 133733351 -8538093 - AluSg/x SINE Alu -1 309 67 2336 98 0 0 chr9 133733895 133734202 -8537242 + AluSx SINE Alu 1 307 -5 327 411 57 5 chr9 133734326 133734535 -8536909 + MIR SINE MIR 12 231 -31 192 178 151 41 chr9 133734594 133734667 -8536777 - L2 LINE L2 -50 3222 3142 217 139 0 23 chr9 133734755 133734798 -8536646 + L2 LINE L2 3267 3308 -5 1446 147 20 36 chr9 133734805 133735057 -8536387 + AluJb SINE Alu 2 249 -63 216 189 0 0 chr9 133735058 133735095 -8536349 + A-rich Low_complexity Low_complexity 2 38 0 366 282 184 29 chr9 133736270 133736661 -8534783 + L2 LINE L2 2645 3105 -167 298 180 198 33 chr9 133736714 133736834 -8534610 - MIR SINE MIR -63 145 28 318 253 44 0 chr9 133736853 133736944 -8534500 - MIR3 SINE MIR -24 184 90 2158 129 3 0 chr9 133738177 133738488 -8532956 - AluSx SINE Alu 0 312 1 344 116 19 0 chr9 133738527 133738590 -8532854 - MER57A LTR ERV1 -58 345 295 290 298 0 12 chr9 133738818 133738902 -8532542 - L2 LINE L2 -2 3270 3188 1815 127 3 40 chr9 133739203 133739306 -8532138 + AluSx SINE Alu 9 114 -198 2338 74 0 16 chr9 133739306 133739617 -8531827 - AluSc SINE Alu -3 306 1 1815 127 3 40 chr9 133739617 133739813 -8531631 + AluSx SINE Alu 114 297 -15 215 210 48 0 chr9 133740441 133740503 -8530941 + L2 LINE L2 2439 2503 -811 338 284 47 47 chr9 133740553 133740764 -8530680 + L2 LINE L2 2637 2847 -467 1936 159 10 0 chr9 133740901 133741210 -8530234 + AluSx SINE Alu 1 312 0 2217 116 3 3 chr9 133741213 133741524 -8529920 + AluSp SINE Alu 3 313 0 544 320 48 0 chr9 133741579 133741785 -8529659 - L1MEc LINE L1 -6047 349 134 27 29 0 0 chr9 133741875 133741909 -8529535 + AT_rich Low_complexity Low_complexity 1 34 0 783 187 7 0 chr9 133741913 133742052 -8529392 - FLAM_C SINE Alu -1 142 3 1149 190 26 0 chr9 133742058 133742284 -8529160 - L1MD3 LINE L1 -25 7970 7739 451 244 45 0 chr9 133742277 133742390 -8529054 + L1MB3 LINE L1 5692 5821 -362 * 2320 97 3 0 chr9 133742390 133742700 -8528744 + AluSx SINE Alu 1 311 -1 451 244 45 0 chr9 133742700 133742718 -8528726 + L1MB3 LINE L1 5821 5837 -346 794 253 187 32 chr9 133742799 133742832 -8528612 + MLT1E3 LTR MaLR 1 28 -596 835 150 0 8 chr9 133742832 133742959 -8528485 - FLAM_A SINE Alu -7 126 1 794 253 187 32 chr9 133742959 133743158 -8528286 + MLT1E3 LTR MaLR 28 195 -429 2063 132 3 0 chr9 133743158 133743462 -8527982 + AluSx SINE Alu 3 307 -5 794 253 187 32 chr9 133743462 133743676 -8527768 + MLT1E3 LTR MaLR 195 482 -142 566 165 19 0 chr9 133743784 133743887 -8527557 + MLT1E3 LTR MaLR 442 546 -47 1369 147 5 0 chr9 133743990 133744194 -8527250 - AluJb SINE Alu -102 210 6 387 249 11 136 chr9 133744322 133744363 -8527081 + L2 LINE L2 3156 3200 -113 1079 179 162 45 chr9 133744363 133744536 -8526908 - MER33 DNA MER1_type -2261 324 173 1708 127 54 11 chr9 133744536 133744812 -8526632 - AluJo SINE Alu -24 288 1 1079 179 162 45 chr9 133744812 133744928 -8526516 - MER33 DNA MER1_type -2412 173 1 387 249 11 136 chr9 133744928 133745063 -8526381 + L2 LINE L2 3200 3310 -3 265 246 0 0 chr9 133745115 133745176 -8526268 + CT-rich Low_complexity Low_complexity 4 64 0 245 146 18 55 chr9 133745319 133745374 -8526070 - MER5A DNA MER1_type -90 99 47 249 236 214 0 chr9 133746970 133747059 -8524385 + MIR SINE MIR 30 137 -71 198 171 0 0 chr9 133747487 133747522 -8523922 + MIR SINE MIR 110 144 -64 2200 93 13 3 chr9 133747609 133747910 -8523534 - AluSq SINE Alu -9 304 1 435 154 55 0 chr9 133748055 133748146 -8523298 - L1MB2 LINE L1 -3 6168 6073 972 147 11 28 chr9 133748146 133748298 -8523146 - AluJb SINE Alu -25 287 137 1753 161 20 3 chr9 133748298 133748473 -8522971 - AluSx SINE Alu -8 304 120 243 0 0 0 chr9 133748473 133748500 -8522944 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1753 161 20 3 chr9 133748500 133748623 -8522821 - AluSx SINE Alu -192 120 1 972 147 11 28 chr9 133748623 133748647 -8522797 - AluJb SINE Alu -175 137 114 476 302 68 10 chr9 133748770 133748962 -8522482 + MIR SINE MIR 16 218 -44 297 237 31 0 chr9 133749983 133750080 -8521364 + L2 LINE L2 2913 3012 -260 289 301 21 21 chr9 133750129 133750222 -8521222 + L2 LINE L2 3217 3309 -4 1438 142 0 9 chr9 133750555 133750788 -8520656 + AluJb SINE Alu 1 231 -81 1576 145 142 33 chr9 133751068 133751405 -8520039 + THE1C LTR MaLR 2 375 0 552 238 56 0 chr9 133751456 133751599 -8519845 - MIR SINE MIR -12 250 100 208 286 0 77 chr9 133751886 133751897 -8519547 + MER5A DNA MER1_type 8 11 -178 314 291 10 39 chr9 133751897 133752000 -8519444 - MER5A DNA MER1_type -2 187 88 2528 55 0 0 chr9 133752148 133752456 -8518988 - AluY SINE Alu -3 308 1 260 301 12 12 chr9 133752627 133752710 -8518734 - MIR3 SINE MIR -37 171 89 987 174 6 0 chr9 133752892 133753059 -8518385 + FRAM SINE Alu 1 166 -10 220 205 0 0 chr9 133753094 133753133 -8518311 + L2 LINE L2 3225 3263 -9 1509 158 90 0 chr9 133754574 133754744 -8516700 - AluJb SINE Alu -8 304 98 288 0 0 0 chr9 133754744 133754776 -8516668 + (TG)n Simple_repeat Simple_repeat 2 33 0 1509 158 90 0 chr9 133754776 133754884 -8516560 - AluJb SINE Alu -214 98 1 2289 219 49 22 chr9 133755373 133755926 -8515518 - MER74B LTR ERVL 0 622 55 441 281 82 14 chr9 133756143 133756289 -8515155 - MIR SINE MIR -60 202 47 376 61 0 30 chr9 133756429 133756495 -8514949 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 2192 82 0 0 chr9 133756497 133756776 -8514668 - AluSg SINE Alu -30 280 2 360 59 0 0 chr9 133756776 133756827 -8514617 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 1907 99 3 51 chr9 133756829 133757121 -8514323 - AluSq SINE Alu -35 278 1 1861 139 4 0 chr9 133757126 133757406 -8514038 - AluJb SINE Alu -18 294 14 2066 113 0 0 chr9 133757422 133757726 -8513718 - AluSx SINE Alu 0 304 1 384 259 56 56 chr9 133757838 133758000 -8513444 - MIR SINE MIR -80 182 21 28 38 0 19 chr9 133758226 133758257 -8513187 + AT_rich Low_complexity Low_complexity 1 32 -20 1748 158 0 17 chr9 133758257 133758549 -8512895 + AluJb SINE Alu 1 287 -25 28 38 0 19 chr9 133758549 133758570 -8512874 + AT_rich Low_complexity Low_complexity 32 52 0 1090 232 39 11 chr9 133758578 133758732 -8512712 - AluJb SINE Alu -15 297 130 2198 118 0 3 chr9 133758732 133759045 -8512399 - AluSx SINE Alu 0 312 1 1090 232 39 11 chr9 133759045 133759174 -8512270 - AluJb SINE Alu -182 130 6 315 177 0 51 chr9 133759178 133759257 -8512187 - L1MB8 LINE L1 -2 6176 6102 2290 88 0 13 chr9 133759320 133759628 -8511816 + AluSg SINE Alu 1 304 -6 1978 148 3 0 chr9 133759779 133760083 -8511361 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr9 133760156 133760178 -8511266 + AT_rich Low_complexity Low_complexity 1 22 0 229 125 54 0 chr9 133760178 133760234 -8511210 - L1PB2 LINE L1 -2 6149 6091 583 246 4 129 chr9 133760974 133761214 -8510230 - L2 LINE L2 0 3313 3104 1678 109 8 12 chr9 133761475 133761723 -8509721 + AluSg SINE Alu 53 299 -11 986 250 52 40 chr9 133761724 133761809 -8509635 + L1M4 LINE L1 4650 4732 -1414 576 40 0 0 chr9 133761809 133761884 -8509560 + (TCTCCC)n Simple_repeat Simple_repeat 1 75 0 10521 28 1 87 chr9 133761884 133763366 -8508078 + SVA Other Other 50 1386 0 986 250 52 40 chr9 133763366 133763477 -8507967 + L1M4 LINE L1 4732 4840 -1306 2043 128 0 0 chr9 133763477 133763781 -8507663 - AluSx SINE Alu -8 304 1 986 250 52 40 chr9 133763781 133763982 -8507462 + L1M4 LINE L1 4840 5054 -1092 338 245 75 27 chr9 133763955 133763985 -8507459 + L1MEc LINE L1 1641 1668 -4728 * 1952 136 7 3 chr9 133763985 133764293 -8507151 + AluSx SINE Alu 1 309 -3 338 245 75 27 chr9 133764293 133764450 -8506994 + L1MEc LINE L1 1668 1837 -4559 444 205 0 0 chr9 133764452 133764535 -8506909 - AluS SINE Alu -2 309 227 1615 198 0 0 chr9 133764536 133764824 -8506620 - AluJo SINE Alu -14 298 11 705 232 84 46 chr9 133764840 133765125 -8506319 + L1MEc LINE L1 1814 2109 -4287 865 119 0 0 chr9 133765158 133765276 -8506168 + FLAM_C SINE Alu 1 118 -25 372 256 87 112 chr9 133765318 133765433 -8506011 + L1ME4a LINE L1 5718 5834 -287 180 0 0 0 chr9 133765433 133765453 -8505991 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 817 138 0 0 chr9 133765455 133765571 -8505873 - FLAM_C SINE Alu -15 118 3 372 256 87 112 chr9 133765571 133765682 -8505762 + L1ME4a LINE L1 5835 5943 -178 2344 83 0 0 chr9 133765682 133765982 -8505462 - AluY SINE Alu -11 300 1 372 256 87 112 chr9 133765982 133765993 -8505451 + L1ME4a LINE L1 5943 5953 -168 352 152 12 15 chr9 133766154 133766235 -8505209 + AluS SINE Alu 1 66 -235 541 159 0 0 chr9 133766238 133766326 -8505118 - AluSg1 SINE Alu -221 88 1 2138 119 0 3 chr9 133766378 133766681 -8504763 + AluSx SINE Alu 1 302 -10 544 318 74 0 chr9 133766695 133766912 -8504532 + MIR SINE MIR 28 260 -2 202 200 0 0 chr9 133767230 133767265 -8504179 + CT-rich Low_complexity Low_complexity 3 37 0 249 242 15 15 chr9 133767359 133767425 -8504019 - MLT1K LTR MaLR -336 252 187 417 20 0 0 chr9 133767912 133767962 -8503482 + (CA)n Simple_repeat Simple_repeat 2 51 0 282 202 13 0 chr9 133768842 133768913 -8502531 + MIR SINE MIR 55 129 -79 243 0 0 0 chr9 133769534 133769561 -8501883 + (CAGGG)n Simple_repeat Simple_repeat 2 28 0 225 332 128 5 chr9 133770452 133770639 -8500805 + MIR SINE MIR 37 246 -16 255 305 49 12 chr9 133770658 133770740 -8500704 - L2 LINE L2 0 3272 3188 1128 143 0 16 chr9 133772614 133772796 -8498648 - FRAM SINE Alu -1 175 1 1762 175 0 0 chr9 133772806 133773098 -8498346 - AluJo SINE Alu -20 292 1 344 362 174 10 chr9 133773102 133773624 -8497820 + L2 LINE L2 2149 2756 -558 417 198 0 0 chr9 133773727 133773813 -8497631 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 786 180 0 0 chr9 133773813 133773935 -8497509 - FLAM_A SINE Alu -11 122 1 213 389 60 7 chr9 133773989 133774138 -8497306 + L2 LINE L2 3088 3244 -28 242 206 32 0 chr9 133774857 133774920 -8496524 + MIR SINE MIR 103 167 -95 465 304 18 12 chr9 133775069 133775237 -8496207 - MIR SINE MIR -40 222 54 243 0 0 0 chr9 133775461 133775488 -8495956 + (CAGG)n Simple_repeat Simple_repeat 3 29 0 360 231 94 43 chr9 133775806 133775923 -8495521 + MIR SINE MIR 90 212 -50 278 303 57 8 chr9 133775958 133776080 -8495364 - MIR SINE MIR -61 147 20 258 379 9 9 chr9 133776932 133777048 -8494396 - MIR3 SINE MIR -29 179 64 538 258 53 0 chr9 133777125 133777257 -8494187 - MIR SINE MIR -34 228 90 203 342 87 13 chr9 133777668 133777817 -8493627 + MIR SINE MIR 13 172 -90 923 253 76 27 chr9 133778401 133778623 -8492821 - MER58B DNA MER1_type -2104 316 74 2125 110 0 0 chr9 133778623 133778948 -8492496 + AluSq SINE Alu 1 313 0 923 253 76 27 chr9 133778948 133779026 -8492418 - MER58B DNA MER1_type -2346 74 1 270 244 191 24 chr9 133779305 133779473 -8491971 + MIR SINE MIR 33 228 -34 24 0 0 0 chr9 133779980 133780004 -8491440 + AT_rich Low_complexity Low_complexity 1 24 0 265 294 150 38 chr9 133780405 133780565 -8490879 - MIR3 SINE MIR -28 180 3 2222 186 50 14 chr9 133781036 133781179 -8490265 + L1MB3 LINE L1 5683 5820 -363 2006 123 0 23 chr9 133781179 133781488 -8489956 + AluSx SINE Alu 1 302 -10 2222 186 50 14 chr9 133781488 133781828 -8489616 + L1MB3 LINE L1 5820 6183 0 351 297 62 0 chr9 133782137 133782265 -8489179 - MIR3 SINE MIR -36 172 37 800 118 22 29 chr9 133782844 133782980 -8488464 + AluJo SINE Alu 1 135 -177 1246 181 114 4 chr9 133782980 133783251 -8488193 + AluJo SINE Alu 1 301 -11 203 286 205 9 chr9 133783817 133783929 -8487515 + MIR3 SINE MIR 61 194 -14 285 29 0 0 chr9 133784406 133784440 -8487004 + (TG)n Simple_repeat Simple_repeat 2 35 0 254 319 0 17 chr9 133785392 133785511 -8485933 + GA-rich Low_complexity Low_complexity 3 119 0 227 288 55 0 chr9 133786259 133786332 -8485112 - MIR SINE MIR -56 152 76 235 241 0 0 chr9 133786729 133786787 -8484657 + MER117 DNA MER1_type 2 59 -138 327 305 28 35 chr9 133787112 133787253 -8484191 + MIR3 SINE MIR 46 185 -23 291 305 48 0 chr9 133787600 133787705 -8483739 - MIR SINE MIR -69 139 30 282 252 36 36 chr9 133788977 133789088 -8482356 - MIR3 SINE MIR -7 201 91 252 100 0 0 chr9 133789933 133789973 -8481471 + (CA)n Simple_repeat Simple_repeat 1 40 0 185 219 31 47 chr9 133791208 133791272 -8480172 - MIR SINE MIR -68 140 78 311 304 65 20 chr9 133791863 133792065 -8479379 - MIR SINE MIR -3 259 47 2045 107 3 50 chr9 133793196 133793513 -8477931 + AluSx SINE Alu 1 302 -10 183 286 0 0 chr9 133793650 133793692 -8477752 + L2 LINE L2 3154 3195 -77 368 181 42 0 chr9 133793789 133793861 -8477583 + MIR SINE MIR 80 154 -108 524 214 107 0 chr9 133794105 133794208 -8477236 - MER81 DNA DNA 0 114 1 226 316 0 25 chr9 133795179 133795258 -8476186 + G-rich Low_complexity Low_complexity 2 78 0 450 291 35 14 chr9 133795944 133796085 -8475359 - MIR SINE MIR -91 171 28 211 152 0 0 chr9 133796708 133796741 -8474703 + MIR SINE MIR 114 146 -62 251 352 71 64 chr9 133798007 133798274 -8473170 + L2 LINE L2 2951 3219 -53 1699 152 4 7 chr9 133799564 133799834 -8471610 + AluSx SINE Alu 44 312 0 318 227 57 0 chr9 133799834 133799922 -8471522 - Charlie1 DNA MER1_type -47 2714 2622 305 121 0 52 chr9 133800440 133800498 -8470946 + AluJo SINE Alu 85 139 -163 1586 176 50 4 chr9 133800500 133800617 -8470827 + AluJb SINE Alu 1 111 -201 188 86 29 0 chr9 133800617 133800652 -8470792 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1586 176 50 4 chr9 133800652 133800812 -8470632 + AluJb SINE Alu 111 291 -21 247 296 14 0 chr9 133802766 133802837 -8468607 + MIR3 SINE MIR 111 182 -26 796 204 64 45 chr9 133803648 133803913 -8467531 + MER33 DNA MER1_type 1 270 -54 1565 112 150 4 chr9 133803914 133804174 -8467270 + AluSg SINE Alu 1 298 -12 305 247 25 49 chr9 133804176 133804257 -8467187 - L1MC4 LINE L1 -1350 6692 6614 295 165 0 153 chr9 133805569 133805654 -8465790 + MIR3 SINE MIR 106 177 -31 333 277 50 0 chr9 133805664 133805765 -8465679 - MIR SINE MIR -60 148 43 379 255 43 43 chr9 133806272 133806413 -8465031 - MIR SINE MIR -109 153 13 * 410 226 43 0 chr9 133806386 133806479 -8464965 - MIR SINE MIR -48 214 118 204 277 123 0 chr9 133808118 133808183 -8463261 - L3 LINE CR1 -100 1477 1405 248 128 0 0 chr9 133808203 133808250 -8463194 - Alu SINE Alu -6 302 256 192 222 0 0 chr9 133808620 133808674 -8462770 + L2 LINE L2 2921 2974 -340 200 132 0 26 chr9 133809115 133809153 -8462291 + L3 LINE CR1 1425 1461 -116 1040 222 70 119 chr9 133809400 133809500 -8461944 + MLT1C LTR MaLR 5 108 -359 2029 109 0 11 chr9 133809500 133809785 -8461659 + AluSx SINE Alu 1 282 -30 1040 222 70 119 chr9 133809785 133810171 -8461273 + MLT1C LTR MaLR 108 467 0 380 288 9 18 chr9 133810180 133810291 -8461153 - MIR SINE MIR -62 146 37 255 196 18 18 chr9 133810996 133811052 -8460392 - MER117 DNA MER1_type -18 179 124 2184 122 0 0 chr9 133811055 133811358 -8460086 - AluSx SINE Alu -9 303 1 655 167 5 113 chr9 133811455 133811641 -8459803 + MER20 DNA MER1_type 1 166 -53 1440 138 0 0 chr9 133811747 133811957 -8459487 - AluJo SINE Alu -13 299 90 180 77 0 0 chr9 133812025 133812051 -8459393 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 787 179 131 40 chr9 133812052 133812300 -8459144 + Charlie1 DNA MER1_type 2424 2701 -60 1535 150 105 0 chr9 133812300 133812567 -8458877 - AluSx SINE Alu -17 295 1 787 179 131 40 chr9 133812567 133812592 -8458852 + Charlie1 DNA MER1_type 2701 2722 -39 2177 97 10 0 chr9 133812763 133813051 -8458393 - AluSq SINE Alu -22 291 1 237 186 0 0 chr9 133813102 133813145 -8458299 + Charlie1 DNA MER1_type 2718 2760 -1 572 144 28 33 chr9 133813748 133813928 -8457516 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 998 82 38 6 chr9 133813960 133814301 -8457143 + (TGGA)n Simple_repeat Simple_repeat 2 353 0 596 183 35 0 chr9 133814405 133814547 -8456897 + L1M4 LINE L1 5186 5332 -814 2184 94 0 0 chr9 133814549 133814835 -8456609 + AluSx SINE Alu 3 288 -24 1958 154 26 54 chr9 133814850 133815192 -8456252 - L1MB2 LINE L1 -6 6165 5834 2152 117 10 0 chr9 133815192 133815499 -8455945 - AluSx SINE Alu -2 310 1 1958 154 26 54 chr9 133815499 133815545 -8455899 - L1MB2 LINE L1 -337 5834 5788 264 113 0 19 chr9 133815545 133815598 -8455846 + L1MB7 LINE L1 6128 6179 -5 545 256 56 15 chr9 133815613 133815808 -8455636 + L1ME3A LINE L1 5963 6165 -5 359 225 22 0 chr9 133816727 133816816 -8454628 + MER103 DNA DNA 57 147 -19 536 340 67 32 chr9 133816974 133817227 -8454217 + MIR SINE MIR 1 262 0 202 280 0 0 chr9 133817227 133817277 -8454167 + (CTA)n Simple_repeat Simple_repeat 3 52 0 230 292 146 56 chr9 133817423 133817567 -8453877 + MIR SINE MIR 20 176 -86 215 350 83 6 chr9 133817566 133817746 -8453698 - MIR SINE MIR -2 260 67 * 426 236 97 0 chr9 133818225 133818369 -8453075 + MER117 DNA MER1_type 1 158 -39 609 295 42 0 chr9 133818847 133819013 -8452431 - MER5B DNA MER1_type -4 174 2 2276 90 10 0 chr9 133819550 133819850 -8451594 - AluSq SINE Alu -10 303 1 330 273 139 29 chr9 133819928 133820100 -8451344 - MIR SINE MIR -12 250 60 226 298 60 0 chr9 133820333 133820417 -8451027 - MIR SINE MIR -102 106 18 303 122 0 0 chr9 133820957 133821006 -8450438 - MIR SINE MIR -89 119 71 213 333 32 0 chr9 133821093 133821156 -8450288 - MIR SINE MIR -3 259 195 240 163 0 0 chr9 133822172 133822215 -8449229 + (CA)n Simple_repeat Simple_repeat 2 44 0 425 252 29 0 chr9 133824227 133824330 -8447114 + MIR3 SINE MIR 93 198 -10 1955 156 0 10 chr9 133824720 133825027 -8446417 - AluJo SINE Alu -8 304 1 1940 138 3 0 chr9 133825683 133825972 -8445472 + AluSx SINE Alu 1 290 -22 202 298 105 16 chr9 133826181 133826305 -8445139 - MIR3 SINE MIR -71 137 3 2130 141 0 3 chr9 133826733 133827039 -8444405 - 7SLRNA srpRNA srpRNA -14 306 2 492 273 103 39 chr9 133827116 133827449 -8443995 - L2 LINE L2 -213 3059 2686 2023 146 7 0 chr9 133828032 133828333 -8443111 - AluJb SINE Alu -7 305 3 1869 116 0 22 chr9 133829127 133829403 -8442041 - AluJo SINE Alu -5 307 38 238 269 81 60 chr9 133829407 133829556 -8441888 + Charlie7 DNA MER1_type 2461 2612 0 2464 113 22 19 chr9 133829888 133830251 -8441193 + THE1B LTR MaLR 1 364 0 331 222 153 35 chr9 133830504 133830648 -8440796 + MLT1K LTR MaLR 188 348 -240 187 152 43 0 chr9 133831184 133831230 -8440214 + (GGGTG)n Simple_repeat Simple_repeat 4 51 0 221 211 0 0 chr9 133831764 133831802 -8439642 + MIR SINE MIR 116 153 -109 409 298 25 25 chr9 133833610 133833768 -8437676 + L2 LINE L2 3000 3157 -115 277 156 16 16 chr9 133834105 133834169 -8437275 + GA-rich Low_complexity Low_complexity 1 64 0 2434 51 3 22 chr9 133834278 133834590 -8436854 - AluY SINE Alu -5 306 1 358 295 160 17 chr9 133834744 133834981 -8436463 + L2 LINE L2 1746 2016 -1298 382 290 96 57 chr9 133836863 133837198 -8434246 - L2 LINE L2 -10 3262 2915 2266 166 11 84 chr9 133837220 133837431 -8434013 + L1MB8 LINE L1 5648 5873 -305 2330 87 0 0 chr9 133837431 133837730 -8433714 + AluSx SINE Alu 1 299 -13 2266 166 11 84 chr9 133837730 133838086 -8433358 + L1MB8 LINE L1 5873 6173 -5 322 239 142 22 chr9 133839139 133839273 -8432171 - MER117 DNA MER1_type -43 154 5 779 145 8 15 chr9 133839377 133839508 -8431936 - AluJb SINE Alu -178 134 5 605 299 142 31 chr9 133839604 133840062 -8431382 + MLT1J LTR MaLR 1 509 -2 240 321 5 87 chr9 133840266 133840450 -8430994 - MIR SINE MIR -29 233 65 905 121 0 0 chr9 133840496 133840620 -8430824 + FLAM_C SINE Alu 1 124 -19 187 275 138 0 chr9 133841905 133841985 -8429459 + MIR SINE MIR 62 152 -56 354 273 38 53 chr9 133843086 133843218 -8428226 - MIR SINE MIR -67 141 11 267 301 173 8 chr9 133843354 133843487 -8427957 + MIR SINE MIR 107 261 -1 227 181 12 84 chr9 133844620 133844703 -8426741 + G-rich Low_complexity Low_complexity 5 81 0 346 296 13 50 chr9 133844710 133844869 -8426575 - MIR3 SINE MIR -19 189 37 224 365 131 0 chr9 133845309 133845416 -8426028 - MIR SINE MIR -23 239 119 1947 135 7 26 chr9 133845629 133845932 -8425512 + AluSx SINE Alu 1 297 -15 2064 137 7 0 chr9 133846494 133846801 -8424643 - AluJb SINE Alu -3 309 1 2226 110 0 13 chr9 133847126 133847443 -8424001 + AluSp SINE Alu 1 313 0 271 269 30 0 chr9 133847715 133847782 -8423662 - MIR SINE MIR -114 148 80 221 265 0 0 chr9 133848204 133848253 -8423191 - L2 LINE L2 -2 3311 3263 341 301 13 72 chr9 133848381 133848534 -8422910 - MIR3 SINE MIR 0 208 65 207 208 19 0 chr9 133848669 133848722 -8422722 + (CCTG)n Simple_repeat Simple_repeat 3 56 0 210 98 0 122 chr9 133848910 133849033 -8422411 + (CCCCCT)n Simple_repeat Simple_repeat 4 111 0 2015 110 4 4 chr9 133850051 133850364 -8421080 + AluSg SINE Alu 1 313 0 2196 109 0 6 chr9 133850364 133850675 -8420769 + AluSx SINE Alu 1 309 -3 222 289 234 8 chr9 133851992 133852120 -8419324 - MIR SINE MIR -103 159 3 932 141 6 0 chr9 133852398 133852575 -8418869 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 729 217 0 0 chr9 133852546 133852721 -8418723 + (CCCA)n Simple_repeat Simple_repeat 2 176 0 * 954 183 0 0 chr9 133852710 133853053 -8418391 + (TCCA)n Simple_repeat Simple_repeat 1 343 0 493 338 64 26 chr9 133853056 133853479 -8417965 - L2 LINE L2 0 3272 2834 234 364 159 0 chr9 133854291 133854486 -8416958 + L2 LINE L2 2990 3215 -57 386 245 109 49 chr9 133856193 133856377 -8415067 + MIR SINE MIR 16 210 -52 276 270 200 17 chr9 133856480 133856595 -8414849 + MIR3 SINE MIR 43 178 -30 557 247 13 32 chr9 133857210 133857364 -8414080 + MIR3 SINE MIR 12 162 -46 902 246 71 58 chr9 133857368 133857832 -8413612 - MER113 DNA MER1_type? -6 515 46 2111 120 0 0 chr9 133857836 133858128 -8413316 + AluSx SINE Alu 1 292 -20 180 176 0 0 chr9 133858201 133858235 -8413209 + (CCCCAA)n Simple_repeat Simple_repeat 1 34 0 1888 207 18 27 chr9 133858624 133859032 -8412412 + L1MB5 LINE L1 5710 6115 -59 1901 100 10 64 chr9 133859032 133859343 -8412101 - AluY SINE Alu -17 294 1 1888 207 18 27 chr9 133859343 133859383 -8412061 + L1MB5 LINE L1 6115 6154 -20 1841 107 16 78 chr9 133859384 133859693 -8411751 - AluSx SINE Alu -22 290 1 1822 153 0 37 chr9 133859738 133860059 -8411385 + AluJo SINE Alu 1 309 -3 213 345 0 36 chr9 133860613 133860723 -8410721 + L2 LINE L2 3115 3220 -52 180 289 19 0 chr9 133861717 133861769 -8409675 + MER5A DNA MER1_type 92 144 -45 808 139 29 36 chr9 133862077 133862214 -8409230 - AluJo SINE Alu -176 136 1 224 197 49 0 chr9 133862389 133862450 -8408994 + (CATG)n Simple_repeat Simple_repeat 4 67 0 261 278 17 78 chr9 133863602 133863717 -8407727 + MIR3 SINE MIR 48 155 -53 607 155 14 74 chr9 133864073 133864221 -8407223 + MLT1K LTR MaLR 450 588 0 184 306 20 0 chr9 133864359 133864408 -8407036 + MIR3 SINE MIR 152 201 -7 262 340 58 51 chr9 133865328 133865484 -8405960 - MIR SINE MIR -25 237 81 211 309 123 0 chr9 133865667 133865748 -8405696 - MIR3 SINE MIR -17 191 101 333 373 16 0 chr9 133866041 133866167 -8405277 - MIR SINE MIR -110 152 25 192 135 0 0 chr9 133866742 133866779 -8404665 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 467 201 0 117 chr9 133867119 133867175 -8404269 - L1MA10 LINE L1 -2 6332 6271 564 163 20 0 chr9 133867175 133867273 -8404171 - U13 snRNA snRNA 0 104 5 467 201 0 117 chr9 133867273 133867370 -8404074 - L1MA10 LINE L1 -63 6271 6197 354 336 27 34 chr9 133867395 133867544 -8403900 - MIR SINE MIR -113 149 2 1912 152 0 38 chr9 133867767 133868082 -8403362 - AluJb SINE Alu -9 303 1 2122 137 0 0 chr9 133868267 133868566 -8402878 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr9 133868685 133868708 -8402736 + (TG)n Simple_repeat Simple_repeat 1 23 0 257 289 0 13 chr9 133868759 133868835 -8402609 + (TG)n Simple_repeat Simple_repeat 2 76 0 259 307 51 29 chr9 133869209 133869346 -8402098 + MIR3 SINE MIR 2 141 -67 240 263 219 22 chr9 133869770 133869907 -8401537 - MIR SINE MIR -90 172 9 723 147 0 70 chr9 133870974 133871117 -8400327 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr9 133872030 133872051 -8399393 + GC_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 133872261 133872287 -8399157 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 133872411 133872432 -8399012 + GC_rich Low_complexity Low_complexity 1 21 0 466 283 17 46 chr9 133873676 133873849 -8397595 - MIR SINE MIR -74 188 21 1618 121 36 0 chr9 133874443 133874692 -8396752 - AluSx SINE Alu -6 306 49 556 108 0 0 chr9 133874792 133874875 -8396569 - L1MA4 LINE L1 -15 6285 6203 1924 238 62 18 chr9 133874916 133875572 -8395872 - L1M4 LINE L1 -1658 4488 3804 392 215 9 117 chr9 133875590 133875654 -8395790 + L1MC5 LINE L1 7469 7538 -423 1552 158 9 77 chr9 133875654 133875977 -8395467 + AluSx SINE Alu 1 301 -11 392 215 9 117 chr9 133875977 133876044 -8395400 + L1MC5 LINE L1 7538 7611 -350 2380 81 0 3 chr9 133876044 133876354 -8395090 - AluY SINE Alu -1 310 2 392 215 9 117 chr9 133876354 133876463 -8394981 + L1MC5 LINE L1 7611 7671 -290 1908 133 10 0 chr9 133876463 133876757 -8394687 - AluJb SINE Alu -15 297 1 392 215 9 117 chr9 133876757 133876830 -8394614 + L1MC5 LINE L1 7671 7750 -211 208 404 77 0 chr9 133877132 133877285 -8394159 + L2 LINE L2 2564 2735 -579 2217 93 10 0 chr9 133877285 133877576 -8393868 - AluSx SINE Alu -18 294 1 208 404 77 0 chr9 133877576 133877605 -8393839 + L2 LINE L2 2735 2760 -554 310 292 46 39 chr9 133878219 133878349 -8393095 + MIR SINE MIR 17 147 -61 400 308 55 11 chr9 133878478 133878660 -8392784 + MIR SINE MIR 2 191 -71 2299 68 0 19 chr9 133878669 133878978 -8392466 + AluY SINE Alu 2 304 -7 1245 204 33 16 chr9 133879385 133879689 -8391755 + MER58B DNA MER1_type 28 336 -5 247 311 29 78 chr9 133879760 133879863 -8391581 + MIR SINE MIR 56 153 -109 918 161 13 0 chr9 133880263 133880412 -8391032 - FRAM SINE Alu -11 155 5 398 244 179 0 chr9 133880438 133880606 -8390838 + L2 LINE L2 2760 2957 -357 1084 96 0 0 chr9 133880642 133880778 -8390666 + AluSq/x SINE Alu 1 136 -176 2210 103 3 0 chr9 133880778 133881079 -8390365 + AluSx SINE Alu 1 302 -10 1742 169 0 20 chr9 133881379 133881516 -8389928 + AluJb SINE Alu 1 139 -173 2461 57 3 0 chr9 133881516 133881816 -8389628 + AluSp SINE Alu 1 301 -12 1742 169 0 20 chr9 133881816 133881979 -8389465 + AluJb SINE Alu 139 295 -17 235 191 95 23 chr9 133881983 133882069 -8389375 + L1MA7 LINE L1 6109 6199 -92 374 177 76 0 chr9 133882092 133882171 -8389273 + L1MA9 LINE L1 6184 6268 -44 856 172 16 54 chr9 133882171 133882357 -8389087 + AluJb SINE Alu 117 295 -17 204 275 150 56 chr9 133882395 133882555 -8388889 - MIR SINE MIR -59 203 29 182 274 20 0 chr9 133883572 133883623 -8387821 - MIR SINE MIR -63 145 94 271 285 146 15 chr9 133884908 133885045 -8386399 - MIR SINE MIR -81 181 27 436 253 103 6 chr9 133887418 133887592 -8383852 + MIR SINE MIR 31 221 -41 180 245 20 0 chr9 133887769 133887818 -8383626 - MIR3 SINE MIR -3 205 156 283 256 196 24 chr9 133887820 133887988 -8383456 + MER117 DNA MER1_type 1 197 0 1620 100 4 0 chr9 133889874 133890103 -8381341 + MER30 DNA MER1_type 1 230 0 374 294 31 19 chr9 133890192 133890352 -8381092 - MIR SINE MIR -90 172 11 279 160 27 53 chr9 133891071 133891146 -8380298 + GA-rich Low_complexity Low_complexity 3 75 0 252 234 0 75 chr9 133891213 133891320 -8380124 + (GGATG)n Simple_repeat Simple_repeat 4 102 0 1229 127 4 134 chr9 133892215 133892268 -8379176 + AluJb SINE Alu 90 148 -164 2544 67 0 25 chr9 133892268 133892584 -8378860 + AluY SINE Alu 1 308 -3 1229 127 4 134 chr9 133892584 133892783 -8378661 + AluJb SINE Alu 148 309 -3 286 284 60 26 chr9 133894244 133894360 -8377084 - MIR SINE MIR -111 151 32 239 236 127 75 chr9 133894374 133894506 -8376938 + MIR3 SINE MIR 17 157 -51 308 336 114 25 chr9 133895535 133895815 -8375629 + L1ME4a LINE L1 5794 6098 -23 1620 180 126 21 chr9 133895860 133896252 -8375192 + MLT1C LTR MaLR 2 442 -25 279 0 0 0 chr9 133896252 133896283 -8375161 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1620 180 126 21 chr9 133896283 133896312 -8375132 + MLT1C LTR MaLR 442 467 0 2528 68 0 10 chr9 133896380 133896691 -8374753 + AluY SINE Alu 1 308 -3 250 267 176 15 chr9 133896908 133897039 -8374405 + MER117 DNA MER1_type 25 176 -21 241 203 34 17 chr9 133897053 133897112 -8374332 + MER117 DNA MER1_type 117 176 -21 272 291 39 0 chr9 133898018 133898121 -8373323 - L1ME4a LINE L1 -2 6119 6013 2041 127 49 0 chr9 133898191 133898475 -8372969 - AluSx SINE Alu -14 298 1 229 358 80 20 chr9 133898477 133898628 -8372816 - L1ME4a LINE L1 -233 5888 5729 260 272 109 0 chr9 133898677 133898769 -8372675 + MIR SINE MIR 49 150 -112 264 306 11 2 chr9 133898783 133898905 -8372539 + L1M1 LINE L1 5443 5565 -735 921 229 79 74 chr9 133898980 133899206 -8372238 - MLT1D LTR MaLR -83 422 199 2283 120 0 3 chr9 133899206 133899515 -8371929 - AluSx SINE Alu -4 308 1 921 229 79 74 chr9 133899515 133899542 -8371902 - MLT1D LTR MaLR -306 199 174 1930 156 3 3 chr9 133899542 133899848 -8371596 + AluSx SINE Alu 1 306 0 921 229 79 74 chr9 133899848 133900012 -8371432 - MLT1D LTR MaLR -331 174 1 850 308 66 12 chr9 133900014 133900348 -8371096 + L1ME3A LINE L1 5584 5935 -235 2388 97 0 0 chr9 133900348 133900648 -8370796 + AluSx SINE Alu 1 300 -12 1457 242 128 9 chr9 133901123 133901196 -8370248 - L1MDa LINE L1 -5280 1260 1197 1456 139 9 9 chr9 133901196 133901411 -8370033 + AluJo SINE Alu 85 299 -13 1457 242 128 9 chr9 133901411 133901784 -8369660 - L1MDa LINE L1 -5343 1197 761 1912 143 30 40 chr9 133901837 133902138 -8369306 + AluJo SINE Alu 1 298 -14 684 256 158 59 chr9 133902194 133902693 -8368751 - L1MDb LINE L1 -5431 1109 381 1149 150 0 67 chr9 133902693 133902886 -8368558 - AluJb SINE Alu -130 182 3 1365 236 6 66 chr9 133902888 133902985 -8368459 - L1MDb LINE L1 -6171 369 268 186 43 0 0 chr9 133902985 133903008 -8368436 + (TG)n Simple_repeat Simple_repeat 1 23 0 1365 236 6 66 chr9 133903008 133903289 -8368155 - L1MDb LINE L1 -6272 268 34 1098 262 102 8 chr9 133903288 133903749 -8367695 + L1M4 LINE L1 3939 4500 -1646 * 1089 191 28 58 chr9 133903738 133903881 -8367563 + L1M4 LINE L1 4904 5050 -1096 * 2102 139 7 13 chr9 133903881 133904191 -8367253 + AluSx SINE Alu 5 312 0 1089 191 28 58 chr9 133904191 133904372 -8367072 + L1M4 LINE L1 5050 5218 -928 4222 181 25 38 chr9 133904481 133904740 -8366704 + L1MC/D LINE L1 4346 4607 -1539 225 0 0 0 chr9 133904740 133904765 -8366679 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2169 86 0 14 chr9 133904774 133905053 -8366391 - AluSx SINE Alu -37 275 1 4222 181 25 38 chr9 133905053 133905408 -8366036 + L1MC/D LINE L1 4615 4973 -1173 1914 152 0 17 chr9 133905408 133905717 -8365727 + AluJb SINE Alu 1 304 0 4222 181 25 38 chr9 133905717 133906137 -8365307 + L1MC/D LINE L1 4973 5378 -768 570 171 4 163 chr9 133906169 133906244 -8365200 + L1MC/D LINE L1 5354 5439 -803 2013 120 0 34 chr9 133906244 133906536 -8364908 + AluSq SINE Alu 1 282 -31 209 33 33 0 chr9 133906541 133906571 -8364873 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 570 171 4 163 chr9 133906571 133906622 -8364822 + L1MC/D LINE L1 5443 5500 -742 2552 76 0 0 chr9 133906622 133906923 -8364521 + AluSg SINE Alu 1 301 -9 570 171 4 163 chr9 133906923 133907047 -8364397 + L1MC/D LINE L1 5500 5570 -672 893 114 0 0 chr9 133907050 133907173 -8364271 - FLAM_C SINE Alu 0 143 21 1573 132 0 4 chr9 133907273 133907500 -8363944 + AluSg/x SINE Alu 82 307 -5 294 143 0 0 chr9 133907500 133907549 -8363895 + (TA)n Simple_repeat Simple_repeat 2 50 0 324 273 11 0 chr9 133907551 133907639 -8363805 + HAL1 LINE L1 1523 1611 -896 877 148 0 8 chr9 133907646 133907774 -8363670 + FLAM_C SINE Alu 1 127 -16 1499 153 84 49 chr9 133907949 133908008 -8363436 + MER7A DNA MER2_type 21 76 -2962 2123 130 0 3 chr9 133908008 133908307 -8363137 + AluSx SINE Alu 1 298 -14 1499 153 84 49 chr9 133908307 133908555 -8362889 + MER7A DNA MER2_type 76 337 -9 527 173 55 54 chr9 133909082 133909229 -8362215 + MLT1I LTR MaLR 64 188 -221 814 272 75 11 chr9 133909264 133909543 -8361901 + MLT1I LTR MaLR 113 409 0 1899 92 0 30 chr9 133909643 133909905 -8361539 - AluSx SINE Alu -6 306 53 2365 96 3 0 chr9 133909923 133910224 -8361220 - AluSq SINE Alu -11 302 1 475 273 45 25 chr9 133910284 133910482 -8360962 - L2 LINE L2 0 3313 3112 299 205 197 17 chr9 133911075 133911192 -8360252 - L2 LINE L2 -15 3298 3161 1924 156 10 0 chr9 133911307 133911596 -8359848 - AluJo SINE Alu -20 292 1 321 82 0 0 chr9 133912656 133912705 -8358739 + (CGG)n Simple_repeat Simple_repeat 3 51 0 1978 158 3 3 chr9 133915201 133915505 -8355939 + AluJo SINE Alu 8 311 -1 21 36 0 0 chr9 133916912 133916940 -8354504 + AT_rich Low_complexity Low_complexity 1 28 0 705 124 26 9 chr9 133916943 133917056 -8354388 - FLAM_C SINE Alu -24 119 5 2232 131 0 0 chr9 133917477 133917775 -8353669 + AluSq SINE Alu 1 298 -15 2319 104 0 0 chr9 133917818 133918107 -8353337 + AluSx SINE Alu 1 289 -23 2108 137 10 0 chr9 133918112 133918405 -8353039 + AluSx SINE Alu 1 296 -16 413 289 59 15 chr9 133918405 133918540 -8352904 + Charlie8 DNA MER1_type 125 265 -2152 573 163 0 0 chr9 133918778 133918876 -8352568 + MER103 DNA DNA 6 103 -63 851 182 51 28 chr9 133919221 133919397 -8352047 - AluJb SINE Alu -6 306 127 180 352 0 28 chr9 133919476 133919547 -8351897 - L2 LINE L2 -18 3254 3186 745 178 0 20 chr9 133919623 133919775 -8351669 - AluJb SINE Alu -5 307 159 2416 91 3 0 chr9 133919981 133920279 -8351165 - AluY SINE Alu -11 300 2 2324 117 0 0 chr9 133920287 133920594 -8350850 - AluSc SINE Alu -2 307 1 231 317 0 0 chr9 133920785 133920845 -8350599 - L2 LINE L2 -8 3305 3246 500 287 25 32 chr9 133921391 133921548 -8349896 + MIR SINE MIR 2 157 -105 711 205 78 29 chr9 133921563 133921768 -8349676 + L1ME3A LINE L1 5955 6169 -1 198 297 40 0 chr9 133921768 133921842 -8349602 - MIR SINE MIR -5 257 181 227 262 49 0 chr9 133921891 133921952 -8349492 + MIR SINE MIR 151 214 -48 2172 106 3 3 chr9 133922566 133922875 -8348569 - AluSx SINE Alu 0 309 1 324 120 0 0 chr9 133922888 133922938 -8348506 + (TA)n Simple_repeat Simple_repeat 2 51 0 1725 169 12 35 chr9 133922938 133923246 -8348198 - AluJo SINE Alu -9 303 1 282 29 0 0 chr9 133923248 133923283 -8348161 + (T)n Simple_repeat Simple_repeat 1 35 0 234 143 0 24 chr9 133923283 133923325 -8348119 - MER4E LTR ERV1 -72 707 667 240 228 127 0 chr9 133923328 133923407 -8348037 + MER113 DNA MER1_type? 124 212 -309 307 259 86 43 chr9 133923478 133923617 -8347827 - MIR3 SINE MIR -49 159 15 224 250 0 17 chr9 133924172 133924232 -8347212 + MIR SINE MIR 28 86 -176 465 261 62 6 chr9 133924309 133924394 -8347050 + MIR SINE MIR 66 145 -117 1949 82 0 0 chr9 133924394 133924627 -8346817 + AluSg SINE Alu 1 233 -77 465 261 62 6 chr9 133924627 133924702 -8346742 + MIR SINE MIR 145 235 -27 2310 110 0 0 chr9 133925181 133925473 -8345971 + AluSx SINE Alu 1 292 -20 281 250 184 0 chr9 133925591 133925667 -8345777 - MER58A DNA MER1_type -17 90 1 588 326 97 44 chr9 133925667 133925766 -8345678 + L2 LINE L2 2605 2697 -616 1656 172 13 13 chr9 133925766 133926069 -8345375 - AluJo SINE Alu -3 309 7 588 326 97 44 chr9 133926069 133926635 -8344809 + L2 LINE L2 2697 3309 -4 191 196 143 0 chr9 133927201 133927257 -8344187 - L3 LINE CR1 -19 1558 1495 1574 172 0 19 chr9 133927421 133927532 -8343912 + AluJo SINE Alu 26 138 -174 2479 81 0 13 chr9 133927532 133927840 -8343604 + AluSq SINE Alu 1 304 -9 1574 172 0 19 chr9 133927840 133927984 -8343460 + AluJo SINE Alu 138 276 -36 2473 83 3 0 chr9 133928176 133928477 -8342967 + AluSp SINE Alu 1 302 -11 636 163 143 41 chr9 133929741 133929888 -8341556 - FRAM SINE Alu 0 166 5 3205 73 57 13 chr9 133930007 133930485 -8340959 - L1MA1 LINE L1 0 6302 5804 182 203 72 58 chr9 133931333 133931402 -8340042 + MIR SINE MIR 81 150 -112 640 225 0 0 chr9 133932113 133932242 -8339202 + FLAM_A SINE Alu 1 129 -4 2297 98 0 0 chr9 133932242 133932529 -8338915 + AluY SINE Alu 1 287 -24 318 256 0 0 chr9 133932542 133932632 -8338812 + L1MC4 LINE L1 6614 6703 -1339 297 128 0 0 chr9 133933323 133933370 -8338074 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 862 171 14 0 chr9 133933729 133933869 -8337575 - AluJb SINE Alu -12 300 159 1825 159 30 14 chr9 133933922 133934217 -8337227 + AluJo SINE Alu 1 300 -12 276 240 100 10 chr9 133934236 133934336 -8337108 - MER58 DNA MER1_type -2151 269 161 669 171 14 48 chr9 133934929 133935033 -8336411 + Tigger7 DNA MER2_type 1 100 -633 2505 81 0 0 chr9 133935033 133935331 -8336113 - AluSg SINE Alu -12 298 1 669 171 14 48 chr9 133935331 133935372 -8336072 + Tigger7 DNA MER2_type 100 141 -592 649 196 0 0 chr9 133935405 133935512 -8335932 + Tigger7 DNA MER2_type 2381 2487 0 266 244 24 106 chr9 133936235 133936296 -8335148 + Charlie2b DNA MER1_type 568 616 -2166 2415 107 0 0 chr9 133936296 133936604 -8334840 + AluSx SINE Alu 1 308 -4 266 244 24 106 chr9 133936604 133936665 -8334779 + Charlie2b DNA MER1_type 616 680 -2102 470 223 78 30 chr9 133936772 133936938 -8334506 + Charlie2a DNA MER1_type 1477 1650 -1212 1946 189 88 2 chr9 133937045 133937464 -8333980 + L1MD2 LINE L1 5554 6008 -351 297 300 80 47 chr9 133937473 133937623 -8333821 - MIR3 SINE MIR -17 191 37 774 249 16 11 chr9 133937633 133937822 -8333622 + MIR SINE MIR 6 195 -67 2224 109 13 7 chr9 133937851 133938155 -8333289 + AluSc SINE Alu 1 306 -3 487 211 103 54 chr9 133938156 133938341 -8333103 + MER112 DNA MER1_type 23 216 -44 422 250 81 0 chr9 133938478 133938602 -8332842 + L2 LINE L2 3137 3270 -2 309 271 9 56 chr9 133938756 133938863 -8332581 + MIR SINE MIR 125 226 -36 2345 105 0 0 chr9 133938933 133939237 -8332207 + AluSx SINE Alu 1 304 -8 21 57 0 0 chr9 133939275 133939310 -8332134 + AT_rich Low_complexity Low_complexity 1 35 0 2514 68 3 0 chr9 133939770 133940066 -8331378 + AluSp SINE Alu 1 297 -16 1699 154 31 53 chr9 133940184 133940503 -8330941 - AluSx SINE Alu 0 312 1 26 30 0 0 chr9 133940511 133940544 -8330900 + AT_rich Low_complexity Low_complexity 1 33 0 200 303 141 47 chr9 133945043 133945277 -8326167 + L3 LINE CR1 966 1221 -356 243 276 60 60 chr9 133949173 133949307 -8322137 - L2 LINE L2 -3 3310 3177 525 212 166 6 chr9 133950282 133950518 -8320926 - MER46C DNA MER2_type -5 333 6 243 297 0 0 chr9 133951266 133951288 -8320156 + MER3 DNA MER1_type 27 48 -161 545 278 86 0 chr9 133951288 133951450 -8319994 - MER3 DNA MER1_type -1 208 33 24 67 0 0 chr9 133952507 133952552 -8318892 + AT_rich Low_complexity Low_complexity 1 45 0 237 250 130 11 chr9 133952626 133952718 -8318726 - L1MC4 LINE L1 -124 7918 7816 180 0 0 0 chr9 133953058 133953078 -8318366 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1582 162 71 3 chr9 133954058 133954397 -8317047 + L1MB4 LINE L1 5819 6180 0 1056 216 22 56 chr9 133954441 133954709 -8316735 + AluJo SINE Alu 7 265 -47 2439 86 0 0 chr9 133954858 133955161 -8316283 + AluSg SINE Alu 1 303 -7 2190 113 17 7 chr9 133955274 133955576 -8315868 + AluSx SINE Alu 1 305 -7 2094 131 3 3 chr9 133955583 133955880 -8315564 + AluSx SINE Alu 1 297 -15 30 45 0 0 chr9 133956348 133956392 -8315052 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr9 133956443 133956466 -8314978 + AT_rich Low_complexity Low_complexity 1 23 0 243 291 55 47 chr9 133957456 133957583 -8313861 + MIR3 SINE MIR 41 168 -40 258 308 75 17 chr9 133957595 133957736 -8313708 + MER5A DNA MER1_type 29 173 -5 1153 115 155 5 chr9 133957747 133957844 -8313600 - MER30 DNA MER1_type 0 230 149 387 0 0 0 chr9 133957844 133957887 -8313557 + (TG)n Simple_repeat Simple_repeat 2 44 0 1153 115 155 5 chr9 133957887 133957989 -8313455 - MER30 DNA MER1_type -81 149 1 1048 85 15 0 chr9 133958040 133958170 -8313274 + AluSq/x SINE Alu 1 132 -181 2040 115 39 0 chr9 133958172 133958451 -8312993 + AluSq SINE Alu 1 290 -23 334 119 15 15 chr9 133961296 133961363 -8310081 + (CA)n Simple_repeat Simple_repeat 1 67 0 2532 74 3 0 chr9 133961995 133962304 -8309140 - AluSp SINE Alu -3 310 1 343 289 44 0 chr9 133966348 133966462 -8304982 + MIR3 SINE MIR 81 199 -9 1697 133 168 47 chr9 133972526 133972688 -8298756 + MSTA LTR MaLR 1 142 -286 2390 67 0 0 chr9 133972688 133972997 -8298447 + AluSp SINE Alu 1 309 0 1697 133 168 47 chr9 133972997 133973215 -8298229 + MSTA LTR MaLR 142 428 0 332 262 24 12 chr9 133973234 133973318 -8298126 + L1M4 LINE L1 3693 3777 -2369 387 60 45 0 chr9 133973338 133973405 -8298039 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1553 78 5 5 chr9 133973505 133973696 -8297748 + AluSc SINE Alu 84 274 -35 267 104 0 0 chr9 133973698 133973746 -8297698 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 1101 154 30 55 chr9 133973811 133974012 -8297432 + AluJb SINE Alu 5 200 -112 2171 108 3 16 chr9 133974186 133974491 -8296953 - AluSq SINE Alu -9 304 4 2297 89 23 0 chr9 133974775 133975079 -8296365 - AluY SINE Alu 0 311 1 1942 154 3 10 chr9 133975079 133975383 -8296061 - AluSx SINE Alu -9 303 1 1998 143 3 26 chr9 133975383 133975690 -8295754 - AluJo SINE Alu -11 301 1 2012 124 13 20 chr9 133976223 133976529 -8294915 - AluSg SINE Alu -6 304 1 315 0 0 0 chr9 133976549 133976584 -8294860 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2189 62 0 0 chr9 133976587 133976843 -8294601 - AluY SINE Alu -17 294 39 834 172 113 68 chr9 133976847 133977068 -8294376 - L1M4 LINE L1 -1377 4769 4539 506 303 6 0 chr9 133977065 133977243 -8294201 - L1M4 LINE L1 -1891 4255 4077 * 184 314 70 0 chr9 133979139 133979225 -8292219 - MIR SINE MIR -90 172 81 1699 225 58 41 chr9 133979414 133979881 -8291563 - MER82 DNA MER2_type 0 653 179 2246 92 0 74 chr9 133979888 133980077 -8291367 - AluSx SINE Alu 0 312 157 2255 114 3 0 chr9 133980077 133980376 -8291068 - AluSq SINE Alu -13 300 1 2246 92 0 74 chr9 133980376 133980523 -8290921 - AluSx SINE Alu -155 157 1 206 62 31 0 chr9 133980752 133980784 -8290660 + (TG)n Simple_repeat Simple_repeat 2 34 0 347 189 0 0 chr9 133980795 133980885 -8290559 - L1MCa LINE L1 -5003 1423 1334 353 138 0 0 chr9 133980885 133980943 -8290501 - Alu SINE Alu 0 301 244 1196 135 0 12 chr9 133980944 133981114 -8290330 + AluJb SINE Alu 91 258 -54 216 0 0 0 chr9 133981115 133981139 -8290305 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 56 0 0 chr9 133981161 133981197 -8290247 + AT_rich Low_complexity Low_complexity 1 36 0 2553 59 0 10 chr9 133981198 133981503 -8289941 + AluY SINE Alu 1 302 -9 996 251 93 23 chr9 133981561 133981844 -8289600 + L1MCb LINE L1 77 402 -5643 2452 61 34 0 chr9 133981844 133982137 -8289307 + AluSc SINE Alu 1 303 -6 996 251 93 23 chr9 133982137 133982283 -8289161 + L1MCb LINE L1 402 536 -5509 352 263 17 0 chr9 133982553 133982671 -8288773 + L1MCb LINE L1 765 884 -5161 2028 132 3 22 chr9 133982671 133982989 -8288455 + AluJb SINE Alu 1 312 0 189 0 0 0 chr9 133983689 133983710 -8287734 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 550 200 0 0 chr9 133983728 133983833 -8287611 + L1MCb LINE L1 881 985 -5060 2433 92 3 0 chr9 133983838 133984144 -8287300 + AluSq SINE Alu 1 307 -6 444 208 0 0 chr9 133984325 133984421 -8287023 + FRAM SINE Alu 71 166 -10 1709 205 0 10 chr9 133984431 133984733 -8286711 + AluJb SINE Alu 2 300 -12 1110 153 40 91 chr9 133984729 133985004 -8286440 + L1MA10 LINE L1 6073 6333 -1 2358 71 0 0 chr9 133985014 133985295 -8286149 + AluY SINE Alu 1 316 0 217 86 0 0 chr9 133985295 133985330 -8286114 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2440 109 0 0 chr9 133985335 133985647 -8285797 + AluSx SINE Alu 1 312 0 29 0 0 0 chr9 133985648 133985677 -8285767 + AT_rich Low_complexity Low_complexity 1 29 0 2378 100 3 0 chr9 133985696 133986007 -8285437 + AluSq SINE Alu 1 312 -1 2308 102 7 0 chr9 133986553 133986856 -8284588 + AluSx SINE Alu 1 305 -7 222 308 0 0 chr9 133987032 133987097 -8284347 + MIR SINE MIR 117 181 -81 202 176 110 44 chr9 133987662 133987753 -8283691 - L2 LINE L2 -24 3248 3152 207 319 80 18 chr9 133987928 133988041 -8283403 + MIR SINE MIR 14 133 -129 328 342 106 0 chr9 133988239 133988400 -8283044 + MIR SINE MIR 85 262 0 1861 162 6 19 chr9 133988568 133988882 -8282562 - AluSx SINE Alu -2 310 1 2066 107 7 0 chr9 133988897 133989216 -8282228 - AluSx SINE Alu 0 321 1 399 319 37 6 chr9 133989279 133989442 -8282002 - MIR SINE MIR -46 216 49 445 257 19 0 chr9 133989767 133989872 -8281572 + L2 LINE L2 3163 3269 -3 252 258 8 42 chr9 133991142 133991262 -8280182 + GA-rich Low_complexity Low_complexity 3 118 0 21 0 0 0 chr9 133992470 133992491 -8278953 + GC_rich Low_complexity Low_complexity 1 21 0 189 253 42 21 chr9 133993320 133993415 -8278029 - MIR3 SINE MIR -31 177 81 220 246 14 43 chr9 133994394 133994463 -8276981 + GA-rich Low_complexity Low_complexity 3 69 0 296 346 3 24 chr9 133995591 133995834 -8275610 + C-rich Low_complexity Low_complexity 1 237 0 21 71 0 0 chr9 133995837 133995879 -8275565 + GC_rich Low_complexity Low_complexity 1 42 0 232 282 13 13 chr9 133996532 133996610 -8274834 + GA-rich Low_complexity Low_complexity 1 78 0 265 286 0 0 chr9 133998267 133998337 -8273107 - MIR SINE MIR -106 156 87 280 312 74 14 chr9 133999165 133999338 -8272106 + MIR SINE MIR 44 232 -30 264 368 18 0 chr9 134000022 134000136 -8271308 - MIR SINE MIR -24 238 123 2397 68 0 53 chr9 134000256 134000599 -8270845 + AluY SINE Alu 3 311 0 1214 113 0 0 chr9 134000599 134000759 -8270685 + AluSg/x SINE Alu 134 293 -19 2577 62 0 3 chr9 134000759 134001063 -8270381 + AluY SINE Alu 1 303 -8 2133 129 10 3 chr9 134002288 134002590 -8268854 + AluSx SINE Alu 1 304 -8 396 0 0 0 chr9 134002600 134002644 -8268800 + (CA)n Simple_repeat Simple_repeat 2 45 0 241 122 24 0 chr9 134003359 134003400 -8268044 + MIR SINE MIR 212 253 -9 2125 117 45 0 chr9 134003424 134003714 -8267730 - AluSx SINE Alu -9 303 1 197 305 188 16 chr9 134003762 134003890 -8267554 - MIR SINE MIR -107 155 6 1215 145 65 142 chr9 134004730 134004889 -8266555 - AluYb8 SINE Alu -14 304 134 2459 84 3 0 chr9 134004889 134005197 -8266247 - AluSp SINE Alu -4 309 1 1215 145 65 142 chr9 134005197 134005229 -8266215 - AluYb8 SINE Alu -184 134 101 2394 109 0 3 chr9 134005229 134005540 -8265904 - AluSg SINE Alu 0 310 1 1215 145 65 142 chr9 134005540 134005672 -8265772 - AluYb8 SINE Alu -217 101 5 369 0 0 0 chr9 134005720 134005761 -8265683 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 56 0 0 chr9 134006003 134006039 -8265405 + AT_rich Low_complexity Low_complexity 1 36 0 2314 109 3 0 chr9 134006104 134006407 -8265037 - AluSq SINE Alu -9 304 1 186 323 52 10 chr9 134006911 134007007 -8264437 - MIR SINE MIR -131 131 32 733 314 21 30 chr9 134007542 134007876 -8263568 - L1MEc LINE L1 -6029 367 37 2214 102 7 30 chr9 134007889 134008194 -8263250 - AluSx SINE Alu -14 298 1 2215 115 7 0 chr9 134008198 134008493 -8262951 - AluSp SINE Alu -16 297 1 540 261 109 82 chr9 134008497 134008714 -8262730 - L1ME LINE L1 -677 5487 5277 1988 171 0 0 chr9 134008714 134009023 -8262421 - AluJb SINE Alu -3 309 1 540 261 109 82 chr9 134009023 134009150 -8262294 - L1ME LINE L1 -887 5277 5155 2447 101 0 0 chr9 134009150 134009458 -8261986 - AluSx SINE Alu -4 308 1 540 261 109 82 chr9 134009458 134009998 -8261446 - L1ME LINE L1 -1009 5155 4566 228 279 70 23 chr9 134010324 134010410 -8261034 - L2 LINE L2 -1 3271 3182 625 192 40 0 chr9 134011590 134011715 -8259729 - FLAM_A SINE Alu -3 130 1 2499 57 3 38 chr9 134011725 134012039 -8259405 - AluY SINE Alu -8 303 1 2492 67 0 7 chr9 134012365 134012665 -8258779 - AluY SINE Alu -13 298 1 2222 136 0 0 chr9 134012671 134012972 -8258472 - AluSx SINE Alu -11 301 1 44 0 0 0 chr9 134013078 134013122 -8258322 + AT_rich Low_complexity Low_complexity 1 44 0 2221 133 0 0 chr9 134013178 134013480 -8257964 - AluSx SINE Alu -10 302 1 770 246 88 19 chr9 134013630 134013992 -8257452 - L1MC4a LINE L1 -1804 6004 5587 287 189 0 27 chr9 134014029 134014103 -8257341 + (TATATG)n Simple_repeat Simple_repeat 2 73 0 1876 174 20 0 chr9 134014104 134014398 -8257046 - AluJb SINE Alu -12 300 1 790 273 14 53 chr9 134014425 134014632 -8256812 - L1MC4a LINE L1 -2212 5596 5400 2357 81 3 3 chr9 134014632 134014939 -8256505 - AluSp SINE Alu 0 307 1 790 273 14 53 chr9 134014939 134015012 -8256432 - L1MC4a LINE L1 -2408 5400 5326 322 205 72 0 chr9 134015165 134015248 -8256196 - MER5B DNA MER1_type -40 138 50 515 147 10 29 chr9 134015264 134015366 -8256078 - MER92B LTR ERV1 -24 612 513 2244 127 0 3 chr9 134015409 134015717 -8255727 - AluSx SINE Alu -5 307 1 2176 121 0 3 chr9 134015980 134016269 -8255175 - AluSg SINE Alu -14 296 9 634 217 8 8 chr9 134016676 134016805 -8254639 + MER6A DNA MER2_type 1 129 -476 * 655 95 7 139 chr9 134016803 134016940 -8254504 + MER6A DNA MER2_type 487 605 0 2105 112 0 36 chr9 134017038 134017341 -8254103 - AluSx SINE Alu -20 292 1 29 60 0 0 chr9 134017580 134017630 -8253814 + AT_rich Low_complexity Low_complexity 1 50 0 685 132 14 97 chr9 134017917 134018061 -8253383 + AluJo SINE Alu 3 134 -178 29 70 0 0 chr9 134018176 134018233 -8253211 + AT_rich Low_complexity Low_complexity 1 57 0 1435 189 54 30 chr9 134018801 134019097 -8252347 - AluJo SINE Alu -9 303 1 185 209 70 0 chr9 134020813 134020856 -8250588 + L2 LINE L2 2732 2777 -537 303 235 48 92 chr9 134020921 134021226 -8250218 - Charlie7 DNA MER1_type -69 2543 2251 2285 112 0 0 chr9 134021226 134021522 -8249922 - AluSq SINE Alu -17 296 1 276 221 0 29 chr9 134021545 134021613 -8249831 + MLT1F LTR MaLR 1 66 -476 1130 195 38 70 chr9 134021621 134022110 -8249334 + MER54A LTR ERVL 29 789 -112 2383 92 0 3 chr9 134022285 134022590 -8248854 - AluSc SINE Alu -5 304 1 2481 75 0 16 chr9 134022720 134023028 -8248416 + AluY SINE Alu 1 303 -8 2337 99 3 13 chr9 134023230 134023533 -8247911 - AluSp SINE Alu -13 300 1 182 269 39 19 chr9 134024210 134024262 -8247182 + MIR SINE MIR 45 97 -165 32 26 0 0 chr9 134024418 134024457 -8246987 + AT_rich Low_complexity Low_complexity 1 39 0 1669 232 59 21 chr9 134024461 134024936 -8246508 - L1ME1 LINE L1 -27 6139 5647 1510 223 33 81 chr9 134024945 134025252 -8246192 - MLT1D LTR MaLR -9 496 176 1926 149 7 10 chr9 134025252 134025540 -8245904 + AluJb SINE Alu 13 299 -13 1510 223 33 81 chr9 134025540 134025563 -8245881 - MLT1D LTR MaLR -329 176 153 2231 121 3 0 chr9 134025563 134025860 -8245584 - AluSx SINE Alu -14 298 1 1510 223 33 81 chr9 134025860 134026049 -8245395 - MLT1D LTR MaLR -352 153 1 976 181 97 35 chr9 134026049 134026308 -8245136 - L1ME1 LINE L1 -515 5651 5377 1074 167 0 0 chr9 134026559 134026727 -8244717 - AluJb SINE Alu -11 301 134 2344 94 0 3 chr9 134026727 134027024 -8244420 - AluSx SINE Alu -16 296 1 204 255 81 115 chr9 134027720 134027937 -8243507 + MIR SINE MIR 54 262 0 1953 141 13 24 chr9 134028040 134028338 -8243106 + AluJb SINE Alu 1 295 -17 249 33 0 0 chr9 134028338 134028368 -8243076 + (TA)n Simple_repeat Simple_repeat 2 31 0 447 125 0 0 chr9 134028501 134028573 -8242871 + (TCCC)n Simple_repeat Simple_repeat 1 72 0 890 156 15 0 chr9 134028573 134028708 -8242736 - AluSg/x SINE Alu -20 290 154 2501 87 7 0 chr9 134028747 134029057 -8242387 - AluSx SINE Alu 0 312 1 2495 88 0 3 chr9 134029242 134029549 -8241895 - AluSx SINE Alu -6 306 1 461 299 0 8 chr9 134030295 134030429 -8241015 + MIR SINE MIR 13 145 -117 208 272 54 54 chr9 134030570 134030662 -8240782 + MIR SINE MIR 158 249 -13 2230 108 3 3 chr9 134030785 134031082 -8240362 + AluSx SINE Alu 1 297 -15 2500 51 3 3 chr9 134031083 134031376 -8240068 + AluY SINE Alu 1 293 -18 2442 109 0 0 chr9 134031521 134031833 -8239611 - AluSx SINE Alu 0 312 1 295 293 0 0 chr9 134031868 134031943 -8239501 + L2 LINE L2 3239 3313 0 * 769 278 20 52 chr9 134031937 134032032 -8239412 + L3 LINE CR1 1177 1274 -303 2339 81 7 7 chr9 134032032 134032330 -8239114 + AluSq SINE Alu 2 299 -14 2793 33 0 0 chr9 134032334 134032637 -8238807 + AluY SINE Alu 1 303 -8 769 278 20 52 chr9 134032637 134032842 -8238602 + L3 LINE CR1 1277 1472 -105 381 194 0 0 chr9 134033186 134033253 -8238191 + L2 LINE L2 3243 3309 -4 209 250 62 21 chr9 134033385 134033481 -8237963 - L2 LINE L2 -816 2498 2399 1616 180 0 4 chr9 134035385 134035640 -8235804 + AluJb SINE Alu 1 254 -58 2228 86 0 10 chr9 134035643 134035947 -8235497 - AluY SINE Alu -10 301 1 320 274 0 62 chr9 134036081 134036194 -8235250 + MIR SINE MIR 108 213 -49 2161 82 7 3 chr9 134036264 134036555 -8234889 - AluSx SINE Alu -10 302 11 2134 103 0 0 chr9 134036556 134036838 -8234606 - AluSx SINE Alu -30 282 1 6829 102 26 5 chr9 134036838 134037787 -8233657 - HSMAR1 DNA Mariner -316 971 3 1481 197 3 41 chr9 134037900 134038215 -8233229 - AluJo SINE Alu -9 303 1 1879 62 0 16 chr9 134038777 134039020 -8232424 - AluSc SINE Alu -17 292 54 2352 46 0 62 chr9 134039052 134039375 -8232069 - AluY SINE Alu -8 303 1 249 159 61 159 chr9 134039925 134039971 -8231473 - L1ME4a LINE L1 -11 6110 6061 2158 86 3 7 chr9 134039971 134040274 -8231170 + AluSp SINE Alu 3 304 -9 249 159 61 159 chr9 134040274 134040359 -8231085 - L1ME4a LINE L1 -60 6061 5992 540 275 184 61 chr9 134040641 134040744 -8230700 + L2 LINE L2 2593 2682 -631 2375 78 3 0 chr9 134040744 134041053 -8230391 + AluY SINE Alu 1 310 -1 540 275 184 61 chr9 134041053 134041328 -8230116 + L2 LINE L2 2682 3026 -287 251 315 65 56 chr9 134041464 134041572 -8229872 - L2 LINE L2 0 3272 3164 1936 190 62 18 chr9 134041572 134042009 -8229435 - MLT1F LTR MaLR -82 460 5 2229 96 7 0 chr9 134042794 134043087 -8228357 + AluSg SINE Alu 1 295 -15 489 188 68 8 chr9 134043596 134043713 -8227731 - L1ME LINE L1 -439 5682 5559 330 311 88 9 chr9 134045134 134045362 -8226082 + L2 LINE L2 2923 3168 -145 2128 109 0 0 chr9 134045459 134045753 -8225691 - AluSx SINE Alu -18 294 1 265 239 60 26 chr9 134045983 134046100 -8225344 + L1MC5 LINE L1 7383 7503 -458 425 224 123 70 chr9 134046100 134046328 -8225116 + MER102a DNA MER1_type 91 330 0 210 200 25 0 chr9 134046840 134046880 -8224564 + MIR SINE MIR 149 189 -73 2071 110 9 22 chr9 134047460 134047777 -8223667 - AluSq SINE Alu 0 313 1 1860 212 14 14 chr9 134047820 134048239 -8223205 - L1ME1 LINE L1 -5 6161 5743 1766 174 0 0 chr9 134048351 134048639 -8222805 + AluJo SINE Alu 1 288 -24 220 125 42 62 chr9 134048756 134048804 -8222640 - MIR SINE MIR -21 241 195 212 295 16 0 chr9 134048808 134048869 -8222575 + L2 LINE L2 3251 3312 -1 425 35 35 0 chr9 134049341 134049399 -8222045 + (TATG)n Simple_repeat Simple_repeat 3 62 0 580 146 0 0 chr9 134049399 134049481 -8221963 - FLAM_A SINE Alu -27 115 34 25 0 0 0 chr9 134049752 134049777 -8221667 + AT_rich Low_complexity Low_complexity 1 25 0 2243 112 0 0 chr9 134049863 134050195 -8221249 - AluSx SINE Alu 0 332 1 483 260 70 50 chr9 134051024 134051180 -8220264 + L1MEd LINE L1 3 167 -5952 2208 92 6 19 chr9 134051180 134051496 -8219948 + AluSp SINE Alu 1 312 -1 483 260 70 50 chr9 134051496 134051581 -8219863 + L1MEd LINE L1 167 249 -5870 1653 149 3 70 chr9 134051594 134051922 -8219522 - AluJb SINE Alu -6 306 1 1513 205 82 96 chr9 134051931 134052493 -8218951 - L1ME1 LINE L1 -4 6162 5609 440 232 62 73 chr9 134052506 134052683 -8218761 + L1MEd LINE L1 247 421 -5698 1483 164 13 69 chr9 134052684 134053001 -8218443 + AluJb SINE Alu 2 300 -12 180 200 0 0 chr9 134053017 134053057 -8218387 + GA-rich Low_complexity Low_complexity 1 40 0 1359 274 85 45 chr9 134053063 134054239 -8217205 + L1MEd LINE L1 401 1669 -4641 1926 102 69 0 chr9 134054455 134054730 -8216714 + AluSx SINE Alu 1 294 -18 728 168 0 29 chr9 134054894 134055031 -8216413 - FLAM_C SINE Alu 0 133 1 628 283 58 44 chr9 134055058 134055471 -8215973 - HAL1 LINE L1 -1334 1173 755 2039 92 0 10 chr9 134058067 134058360 -8213084 + AluSg SINE Alu 1 290 -20 230 266 101 25 chr9 134059932 134060011 -8211433 + MER112 DNA MER1_type 1 85 -175 287 282 99 40 chr9 134060018 134060115 -8211329 + MER112 DNA MER1_type 43 133 -127 2207 107 7 7 chr9 134060115 134060425 -8211019 - AluSx SINE Alu -2 310 1 287 282 99 40 chr9 134060425 134060529 -8210915 + MER112 DNA MER1_type 133 256 -4 302 329 48 57 chr9 134060538 134060748 -8210696 + MIR SINE MIR 18 225 -37 288 284 55 8 chr9 134061071 134061198 -8210246 - L1MC4 LINE L1 -217 7825 7693 238 26 51 0 chr9 134061698 134061737 -8209707 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2172 75 0 0 chr9 134061740 134062020 -8209424 - AluSx SINE Alu -32 280 1 617 192 72 36 chr9 134062141 134062308 -8209136 + MER104 DNA Tc2 6 178 -2 625 202 52 67 chr9 134063086 134063279 -8208165 + LTR41 LTR ERVL 1 190 -583 2256 102 0 6 chr9 134063706 134064020 -8207424 + AluSx SINE Alu 1 312 0 1233 221 53 12 chr9 134064097 134064419 -8207025 - MER74B LTR ERVL -77 545 211 321 86 0 86 chr9 134064458 134064516 -8206928 - MER74B LTR ERVL -569 53 1 413 111 57 11 chr9 134064525 134064613 -8206831 + LTR50 LTR ERVL 672 780 -14 254 224 134 0 chr9 134064789 134064856 -8206588 - L1P4 LINE L1 -397 5766 5691 533 259 112 9 chr9 134064997 134065229 -8206215 - L1MCc LINE L1 -3637 3304 3049 2187 252 164 33 chr9 134065230 134065411 -8206033 - L1MCc LINE L1 -5447 976 820 206 32 32 0 chr9 134065411 134065442 -8206002 + (TG)n Simple_repeat Simple_repeat 1 32 0 2187 252 164 33 chr9 134065442 134066109 -8205335 - L1MCc LINE L1 -5603 820 17 2477 232 13 57 chr9 134066264 134067031 -8204413 - L1MC4 LINE L1 0 8042 7310 288 278 0 0 chr9 134067095 134067167 -8204277 - L1MC4a LINE L1 -574 7234 7163 1206 278 105 72 chr9 134067167 134067588 -8203856 + L1MEd LINE L1 272 678 -5441 213 39 0 0 chr9 134067588 134067614 -8203830 + (CA)n Simple_repeat Simple_repeat 2 27 0 1206 278 105 72 chr9 134067614 134068100 -8203344 + L1MEd LINE L1 678 1209 -4910 1905 290 49 25 chr9 134068103 134068516 -8202928 - MER115 DNA AcHobo 0 693 235 1262 197 59 24 chr9 134068516 134068844 -8202600 - AluJo SINE Alu 0 312 1 1905 290 49 25 chr9 134068844 134069085 -8202359 - MER115 DNA AcHobo -458 235 1 473 266 83 46 chr9 134069085 134069456 -8201988 + L1MEd LINE L1 1245 1581 -4548 1938 202 67 69 chr9 134069456 134070010 -8201434 + MLT2B3 LTR ERVL 1 553 -1 473 266 83 46 chr9 134070010 134070060 -8201384 + L1MEd LINE L1 1581 1628 -4501 203 338 28 14 chr9 134070088 134070159 -8201285 - MIR SINE MIR -88 120 49 325 257 88 59 chr9 134070809 134070945 -8200499 - MIR SINE MIR -111 151 12 2078 116 0 0 chr9 134071001 134071295 -8200149 - AluSq SINE Alu -19 294 1 3534 124 15 21 chr9 134071753 134072283 -8199161 + MER1A DNA MER1_type 1 527 0 2502 44 0 19 chr9 134072465 134072782 -8198662 + AluY SINE Alu 1 311 0 1854 125 9 59 chr9 134073161 134073482 -8197962 - AluJb SINE Alu -7 305 1 508 224 141 53 chr9 134075159 134075329 -8196115 + MIR3 SINE MIR 5 189 -19 231 273 0 0 chr9 134075359 134075414 -8196030 + L2 LINE L2 3213 3267 -5 2132 139 0 0 chr9 134075580 134075890 -8195554 - AluSx SINE Alu -2 310 1 1824 133 3 13 chr9 134075911 134076211 -8195233 - AluJb SINE Alu -8 304 8 1466 95 53 8 chr9 134076389 134076652 -8194792 + AluY SINE Alu 34 308 -3 1911 127 0 41 chr9 134076661 134076976 -8194468 + AluSq SINE Alu 1 302 -11 747 265 22 9 chr9 134076978 134077201 -8194243 + L1MC5 LINE L1 7003 7228 -733 2188 68 7 0 chr9 134077256 134077535 -8193909 + AluSq SINE Alu 1 281 -32 223 91 23 23 chr9 134077538 134077582 -8193862 + (GGAGA)n Simple_repeat Simple_repeat 5 48 0 748 240 99 24 chr9 134077608 134077900 -8193544 + L1MC5 LINE L1 7249 7562 -399 2223 109 0 3 chr9 134077939 134078252 -8193192 + AluSx SINE Alu 1 312 0 593 214 63 31 chr9 134078735 134078894 -8192550 + MIR SINE MIR 77 240 -22 1929 123 40 7 chr9 134083288 134083589 -8187855 + AluSx SINE Alu 1 311 -1 414 282 169 0 chr9 134083871 134084013 -8187431 + MIR SINE MIR 2 167 -95 2359 74 0 0 chr9 134084218 134084515 -8186929 - AluY SINE Alu -14 297 1 1729 125 18 0 chr9 134084617 134084889 -8186555 + AluSq SINE Alu 37 313 0 2484 77 3 6 chr9 134085144 134085455 -8185989 + AluY SINE Alu 2 311 0 424 308 122 18 chr9 134085780 134086059 -8185385 + L1MC/D LINE L1 5485 5792 -2016 701 155 16 47 chr9 134086426 134086555 -8184889 + FLAM_A SINE Alu 1 125 -8 673 273 70 9 chr9 134087131 134087256 -8184188 + MIR SINE MIR 20 136 -126 1268 200 4 0 chr9 134087256 134087491 -8183953 - MER46A DNA MER2_type 0 236 1 673 273 70 9 chr9 134087491 134087592 -8183852 + MIR SINE MIR 136 260 -2 2135 132 7 3 chr9 134087631 134087934 -8183510 - AluJb SINE Alu -7 305 2 2219 104 17 13 chr9 134088855 134089154 -8182290 + AluSx SINE Alu 1 300 -12 591 322 108 31 chr9 134090848 134091208 -8180236 + L2 LINE L2 2925 3312 -1 2304 97 27 0 chr9 134093421 134093721 -8177723 + AluSg SINE Alu 2 309 -1 299 230 111 56 chr9 134095746 134095909 -8175535 + L1 LINE L1 4675 4846 -1300 281 338 19 38 chr9 134095995 134096152 -8175292 + L1MC4a LINE L1 5431 5584 -537 779 231 63 29 chr9 134096227 134096465 -8174979 - MER112 DNA MER1_type -12 248 3 394 294 38 0 chr9 134096466 134096652 -8174792 + L1MC4a LINE L1 5699 5756 -428 1828 175 0 3 chr9 134096880 134097014 -8174430 + AluSx SINE Alu 1 134 -175 2275 111 3 3 chr9 134097014 134097320 -8174124 + AluSq SINE Alu 1 306 -7 1828 175 0 3 chr9 134097320 134097495 -8173949 + AluSx SINE Alu 134 309 0 231 283 97 35 chr9 134097550 134097663 -8173781 + MIR SINE MIR 41 160 -102 22 0 0 0 chr9 134097977 134097999 -8173445 + AT_rich Low_complexity Low_complexity 1 22 0 2178 111 14 0 chr9 134099687 134099976 -8171468 + AluSq SINE Alu 1 293 -20 2019 106 0 0 chr9 134099981 134100236 -8171208 + AluSg SINE Alu 54 308 -2 1861 146 0 58 chr9 134100893 134101223 -8170221 + AluSx SINE Alu 1 311 -1 2166 113 3 41 chr9 134101323 134101641 -8169803 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr9 134101811 134101840 -8169604 + AT_rich Low_complexity Low_complexity 1 29 0 1851 42 0 5 chr9 134102241 134102454 -8168990 + AluY SINE Alu 64 275 -36 304 21 62 0 chr9 134102457 134102505 -8168939 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 2211 137 0 0 chr9 134102595 134102901 -8168543 + AluSx SINE Alu 1 306 -6 403 254 176 64 chr9 134103495 134103585 -8167859 + L1ME4a LINE L1 5289 5368 -753 2164 114 10 0 chr9 134103585 134103882 -8167562 + AluSx SINE Alu 1 300 -12 403 254 176 64 chr9 134103882 134104121 -8167323 + L1ME4a LINE L1 5368 5655 -466 376 273 7 13 chr9 134104363 134104437 -8167007 + L1ME4a LINE L1 5968 6041 -80 2317 110 0 7 chr9 134104437 134104747 -8166697 - AluSq SINE Alu -5 308 1 376 273 7 13 chr9 134104747 134104826 -8166618 + L1ME4a LINE L1 6041 6120 -1 2104 119 0 53 chr9 134104865 134105183 -8166261 - AluSx SINE Alu -11 301 1 360 77 0 0 chr9 134106845 134106897 -8164547 + (CA)n Simple_repeat Simple_repeat 2 53 0 340 138 0 0 chr9 134107099 134107157 -8164287 - AluSp/q SINE Alu -8 295 238 316 170 99 143 chr9 134107160 134107342 -8164102 - Charlie4a DNA MER1_type -101 407 234 343 102 0 0 chr9 134107377 134107426 -8164018 + Alu SINE Alu 1 49 -259 1371 139 0 0 chr9 134107434 134107628 -8163816 + AluSg/x SINE Alu 103 296 -14 604 206 50 0 chr9 134107982 134108142 -8163302 + Charlie4 DNA MER1_type 17 184 -1777 1914 111 0 23 chr9 134108149 134108411 -8163033 - AluSq SINE Alu -15 298 43 186 347 0 42 chr9 134108761 134108833 -8162611 + L2 LINE L2 2687 2755 -559 313 278 150 35 chr9 134109434 134109607 -8161837 + MIR SINE MIR 20 212 -50 265 300 193 0 chr9 134110617 134110757 -8160687 - MIR SINE MIR 0 262 96 1135 163 58 54 chr9 134110905 134111145 -8160299 + AluJo SINE Alu 54 294 -18 2221 216 75 41 chr9 134111150 134111704 -8159740 + L1M4 LINE L1 2173 2706 -3440 2259 93 13 3 chr9 134111704 134112005 -8159439 + AluSq SINE Alu 1 304 -9 2221 216 75 41 chr9 134112005 134112052 -8159392 + L1M4 LINE L1 2706 2750 -3396 2459 77 0 7 chr9 134112052 134112362 -8159082 + AluSc SINE Alu 1 308 -1 2221 216 75 41 chr9 134112362 134112568 -8158876 + L1M4 LINE L1 2750 3009 -3137 276 157 71 14 chr9 134112596 134112666 -8158778 + Tigger5 DNA MER2_type 2250 2323 0 661 266 111 26 chr9 134112667 134112777 -8158667 + L1M4 LINE L1 3025 3124 -3022 2305 104 0 7 chr9 134112777 134113086 -8158358 + AluSc SINE Alu 1 307 -2 661 266 111 26 chr9 134113086 134113363 -8158081 + L1M4 LINE L1 3124 3445 -2701 2543 68 0 0 chr9 134113369 134113676 -8157768 + AluY SINE Alu 2 308 -3 252 185 92 0 chr9 134113716 134113781 -8157663 + L1M4 LINE L1 4617 4687 -1459 856 267 134 23 chr9 134113802 134113824 -8157620 + L2 LINE L2 2330 2348 -966 2401 89 13 0 chr9 134113824 134114127 -8157317 + AluSx SINE Alu 1 307 -5 856 267 134 23 chr9 134114127 134114493 -8156951 + L2 LINE L2 2348 2761 -553 2294 90 30 0 chr9 134114951 134115252 -8156192 + AluSq SINE Alu 1 310 -3 762 237 65 15 chr9 134115255 134115535 -8155909 + L2 LINE L2 2776 3067 -246 21 0 0 0 chr9 134115535 134115556 -8155888 + AT_rich Low_complexity Low_complexity 1 21 0 883 129 24 0 chr9 134115556 134115680 -8155764 - FLAM_C SINE Alu -6 127 1 882 147 13 0 chr9 134115775 134115925 -8155519 - MLT-int LTR MaLR -185 1550 1399 2180 75 0 14 chr9 134115925 134116204 -8155240 - AluSx SINE Alu -29 283 9 1882 214 64 15 chr9 134116210 134116358 -8155086 - L1ME1 LINE L1 -141 6025 5886 5126 30 2 0 chr9 134116358 134116948 -8154496 + LTR10C LTR ERV1 1 591 0 1882 214 64 15 chr9 134116948 134117271 -8154173 - L1ME1 LINE L1 -280 5886 5531 1156 238 27 42 chr9 134117315 134117394 -8154050 - L1ME1 LINE L1 -933 5213 5134 2090 153 0 0 chr9 134117394 134117695 -8153749 + AluSx SINE Alu 1 301 -11 1156 238 27 42 chr9 134117695 134118023 -8153421 - L1ME1 LINE L1 -1012 5134 4812 2212 97 3 7 chr9 134118279 134118569 -8152875 + AluSg SINE Alu 2 290 -20 2191 105 0 17 chr9 134119037 134119352 -8152092 - AluSg SINE Alu 0 310 1 693 165 0 39 chr9 134120507 134120634 -8150810 + FLAM_A SINE Alu 1 122 -11 308 236 58 63 chr9 134120654 134120828 -8150616 - L1MC4a LINE L1 -1822 5986 5814 2279 93 0 3 chr9 134120843 134121134 -8150310 + AluSg SINE Alu 1 290 -20 567 110 29 81 chr9 134121191 134121230 -8150214 - Charlie2 DNA MER1_type 0 2862 2823 1961 141 32 0 chr9 134121230 134121514 -8149930 - AluSx SINE Alu -19 293 1 567 110 29 81 chr9 134121514 134121610 -8149834 - Charlie2 DNA MER1_type -39 2823 2734 343 60 40 0 chr9 134122053 134122103 -8149341 + (TATG)n Simple_repeat Simple_repeat 3 54 0 606 145 0 0 chr9 134122106 134122189 -8149255 - FLAM_A SINE Alu -26 116 34 25 0 0 0 chr9 134122460 134122485 -8148959 + AT_rich Low_complexity Low_complexity 1 25 0 517 261 78 55 chr9 134122563 134122580 -8148864 + Charlie2b DNA MER1_type 519 534 -2248 2369 108 0 13 chr9 134122580 134122894 -8148550 - AluSg SINE Alu 0 310 1 517 261 78 55 chr9 134122894 134123133 -8148311 + Charlie2b DNA MER1_type 534 781 -2001 * 925 253 33 18 chr9 134123108 134123381 -8148063 + Charlie2b DNA MER1_type 1105 1381 -1401 1956 149 23 3 chr9 134123912 134124213 -8147231 + AluSx SINE Alu 1 307 -5 1329 112 6 0 chr9 134124333 134124511 -8146933 - AluSg1 SINE Alu -130 179 1 1259 67 0 0 chr9 134124525 134124674 -8146770 - AluSp/q SINE Alu -9 304 156 1422 188 48 16 chr9 134124976 134125226 -8146218 - AluJb SINE Alu -54 258 1 2026 111 66 0 chr9 134125269 134125557 -8145887 - AluSx SINE Alu -5 307 1 213 359 0 0 chr9 134128806 134128870 -8142574 + (CACG)n Simple_repeat Simple_repeat 4 67 0 332 312 27 25 chr9 134130890 134131054 -8140390 + MIR SINE MIR 3 153 -55 344 301 80 18 chr9 134131101 134131264 -8140180 + MIR SINE MIR 56 228 -34 382 263 0 21 chr9 134135325 134135420 -8136024 + MIR SINE MIR 75 167 -95 2413 83 3 0 chr9 134135439 134135740 -8135704 + AluY SINE Alu 1 302 -9 2240 89 0 7 chr9 134135746 134136048 -8135396 + AluSc SINE Alu 1 300 -9 1743 124 58 0 chr9 134136048 134136322 -8135122 - AluJo SINE Alu -22 290 1 1744 134 20 20 chr9 134139086 134139378 -8132066 + AluJo SINE Alu 1 292 -20 182 261 0 0 chr9 134139764 134139810 -8131634 + L2 LINE L2 2425 2470 -844 183 200 50 0 chr9 134144023 134144063 -8127381 + MIR SINE MIR 112 153 -109 400 335 137 10 chr9 134145087 134145394 -8126050 + L2 LINE L2 2924 3269 -3 615 262 24 0 chr9 134146203 134146367 -8125077 - MIR SINE MIR -80 182 15 380 317 79 58 chr9 134146989 134147035 -8124409 + L1MDa LINE L1 2343 2387 -4153 2406 81 0 3 chr9 134147035 134147344 -8124100 + AluSg SINE Alu 3 310 0 380 317 79 58 chr9 134147344 134147649 -8123795 + L1MDa LINE L1 2387 5720 -820 286 348 95 13 chr9 134147974 134148132 -8123312 + MIR SINE MIR 44 214 -48 634 215 38 13 chr9 134148852 134149010 -8122434 + L1MB7 LINE L1 6006 6167 -17 5290 142 31 32 chr9 134149354 134150485 -8120959 + pTR5 LTR ERV1 743 2030 -408 268 170 0 0 chr9 134150488 134150541 -8120903 + LTR30 LTR ERV1 552 604 -118 1355 134 5 5 chr9 134150551 134150775 -8120669 + pTR5 LTR ERV1 171 394 -2044 1520 130 168 0 chr9 134151570 134151832 -8119612 + AluJo SINE Alu 1 306 -6 2193 92 7 0 chr9 134151840 134152132 -8119312 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr9 134152708 134152729 -8118715 + GC_rich Low_complexity Low_complexity 1 21 0 318 317 172 11 chr9 134153369 134153549 -8117895 + MIR SINE MIR 48 256 -6 192 318 129 37 chr9 134153669 134153886 -8117558 - L2 LINE L2 -6 3266 3030 2304 86 3 0 chr9 134154836 134155137 -8116307 + AluSq SINE Alu 1 302 -11 2099 102 10 7 chr9 134155350 134155644 -8115800 - AluSg1 SINE Alu -14 295 1 303 268 31 55 chr9 134155646 134155773 -8115671 + MER112 DNA MER1_type 132 255 -5 2269 104 0 0 chr9 134156233 134156532 -8114912 + AluSx SINE Alu 3 301 -11 220 319 69 0 chr9 134157163 134157235 -8114209 - MIR SINE MIR -79 183 107 344 287 85 16 chr9 134157509 134157638 -8113806 + MIR SINE MIR 88 225 -37 307 279 58 10 chr9 134158181 134158285 -8113159 + MIR SINE MIR 32 140 -122 245 269 148 9 chr9 134158372 134158480 -8112964 + MARNA DNA Mariner 180 302 -284 509 160 160 9 chr9 134161138 134161271 -8110173 + AluSg/x SINE Alu 162 310 0 2248 92 10 0 chr9 134161571 134161866 -8109578 - AluSq SINE Alu -15 298 1 541 110 0 0 chr9 134162114 134162187 -8109257 - Alu SINE Alu -236 73 1 2223 95 0 3 chr9 134162248 134162543 -8108901 + AluSc SINE Alu 1 294 -15 2429 114 34 0 chr9 134163401 134163751 -8107693 + THE1B LTR MaLR 3 364 0 248 189 0 38 chr9 134163823 134163876 -8107568 + MIR SINE MIR 212 262 0 311 292 104 40 chr9 134165406 134165794 -8105650 + L1MC5 LINE L1 5473 5813 -357 2383 73 3 0 chr9 134165905 134166207 -8105237 + AluSp SINE Alu 1 303 -10 2101 120 0 23 chr9 134166831 134166969 -8104475 + AluSx SINE Alu 1 141 -171 2395 56 0 23 chr9 134166969 134167273 -8104171 + AluY SINE Alu 1 297 -14 2101 120 0 23 chr9 134167273 134167442 -8104002 + AluSx SINE Alu 141 301 -11 208 312 242 38 chr9 134167565 134167722 -8103722 + MIR3 SINE MIR 17 205 -3 775 201 52 106 chr9 134167746 134168075 -8103369 + L1MC5 LINE L1 6696 7006 -955 1839 112 7 7 chr9 134168078 134168354 -8103090 + AluY SINE Alu 34 309 -2 434 272 8 24 chr9 134168501 134168626 -8102818 - MIR SINE MIR -60 148 26 281 261 14 0 chr9 134168711 134168780 -8102664 + MIR SINE MIR 186 255 -7 362 226 116 65 chr9 134168852 134169007 -8102437 + MER104 DNA Tc2 1 163 -17 376 201 15 116 chr9 134169314 134169513 -8101931 + L2 LINE L2 2918 3096 -176 256 259 25 37 chr9 134170251 134170332 -8101112 + MIR3 SINE MIR 14 93 -115 217 297 126 27 chr9 134171821 134171932 -8099512 + L2 LINE L2 3132 3253 -19 * 239 111 167 0 chr9 134171924 134171978 -8099466 + L3b LINE CR1 1324 1386 -197 273 244 0 35 chr9 134172593 134172679 -8098765 + MIR SINE MIR 111 193 -69 432 243 7 73 chr9 134172925 134173061 -8098383 - MIR SINE MIR -71 191 65 219 36 0 0 chr9 134173793 134173821 -8097623 + (TG)n Simple_repeat Simple_repeat 2 29 0 268 275 89 7 chr9 134174094 134174216 -8097228 + MIR SINE MIR 18 146 -81 266 256 154 34 chr9 134174713 134174830 -8096614 + MIR SINE MIR 31 161 -101 235 286 33 33 chr9 134174971 134175062 -8096382 - MIR SINE MIR -63 145 72 21 36 0 0 chr9 134175442 134175470 -8095974 + GC_rich Low_complexity Low_complexity 1 28 0 32 91 0 0 chr9 134175494 134175582 -8095862 + GC_rich Low_complexity Low_complexity 1 88 0 30 27 0 0 chr9 134176046 134176083 -8095361 + GC_rich Low_complexity Low_complexity 1 37 0 219 300 0 14 chr9 134177309 134177379 -8094065 + MIR SINE MIR 25 93 -115 291 270 50 20 chr9 134177460 134177560 -8093884 + MIR3 SINE MIR 78 180 -28 222 163 41 41 chr9 134177606 134177655 -8093789 + MIR SINE MIR 85 133 -75 306 278 90 23 chr9 134179189 134179322 -8092122 - MIR SINE MIR -48 214 73 2082 100 14 3 chr9 134179340 134179631 -8091813 + AluSx SINE Alu 1 294 -18 458 283 52 29 chr9 134179640 134179813 -8091631 - MIR SINE MIR -6 256 80 3209 186 27 72 chr9 134180306 134180408 -8091036 - L1ME1 LINE L1 -5 6161 6056 2297 86 0 10 chr9 134180408 134180712 -8090732 - AluSc SINE Alu -8 301 1 3209 186 27 72 chr9 134180712 134181145 -8090299 - L1ME1 LINE L1 -110 6056 5605 2215 109 0 7 chr9 134181145 134181311 -8090133 - AluSq SINE Alu -13 300 135 2301 84 7 0 chr9 134181311 134181619 -8089825 - AluY SINE Alu 0 311 2 2215 109 0 7 chr9 134181619 134181754 -8089690 - AluSq SINE Alu -178 135 1 3209 186 27 72 chr9 134181754 134181930 -8089514 - L1ME1 LINE L1 -561 5605 5423 684 168 109 0 chr9 134181930 134182049 -8089395 - FLAM_A SINE Alu 0 133 2 3209 186 27 72 chr9 134182049 134182284 -8089160 - L1ME1 LINE L1 -743 5423 5261 2206 99 0 3 chr9 134182284 134182578 -8088866 - AluSg1 SINE Alu -16 293 1 3209 186 27 72 chr9 134182578 134182605 -8088839 - L1ME1 LINE L1 -905 5261 5234 697 277 77 41 chr9 134183009 134183348 -8088096 - MLT1J LTR MaLR -141 370 20 2218 177 67 65 chr9 134183519 134184038 -8087406 - MLT2B1 LTR ERVL 0 520 1 457 215 29 0 chr9 134185495 134185614 -8085830 + MIR SINE MIR 35 156 -52 1876 123 108 0 chr9 134185635 134185904 -8085540 - AluSx SINE Alu -14 298 1 1093 256 63 125 chr9 134185978 134186280 -8085164 + HAL1 LINE L1 161 480 -2027 2611 53 0 0 chr9 134186280 134186582 -8084862 + AluY SINE Alu 1 302 -9 1093 256 63 125 chr9 134186582 134187100 -8084344 + HAL1 LINE L1 480 1029 -1478 2041 138 3 0 chr9 134187100 134187421 -8084023 + AluSx SINE Alu 5 326 0 1093 256 63 125 chr9 134187421 134187554 -8083890 + HAL1 LINE L1 1029 1169 -1338 1734 121 95 18 chr9 134187554 134187849 -8083595 - AluJb SINE Alu 0 312 2 1093 256 63 125 chr9 134187849 134187932 -8083512 + HAL1 LINE L1 1169 1131 -1376 429 132 53 0 chr9 134187932 134188008 -8083436 + MADE1 DNA Mariner 1 80 0 1093 256 63 125 chr9 134188008 134188075 -8083369 + HAL1 LINE L1 1130 1200 -1307 915 112 0 30 chr9 134188079 134188213 -8083231 + AluSp/q SINE Alu 173 302 -11 1135 230 96 86 chr9 134188213 134188757 -8082687 + HAL1 LINE L1 1196 1744 -763 2152 103 3 19 chr9 134188763 134189075 -8082369 + AluY SINE Alu 3 309 -2 714 196 205 22 chr9 134189075 134189304 -8082140 - L1MC/D LINE L1 -758 5586 5316 348 298 127 61 chr9 134189723 134189968 -8081476 - MIR SINE MIR 0 262 2 319 288 38 15 chr9 134191335 134191467 -8079977 - MIR SINE MIR -69 193 59 1532 94 0 10 chr9 134191632 134191833 -8079611 + AluSg/x SINE Alu 95 293 -16 671 114 88 0 chr9 134192024 134192138 -8079306 - AluSp SINE Alu -180 133 10 1635 99 4 17 chr9 134192144 134192376 -8079068 - AluY SINE Alu -82 229 1 921 178 20 0 chr9 134192377 134192523 -8078921 - FRAM SINE Alu -14 162 14 1589 249 93 42 chr9 134193013 134193113 -8078331 + L1ME LINE L1 234 327 -5743 2130 103 0 4 chr9 134193113 134193420 -8078024 + AluSg SINE Alu 1 306 0 1589 249 93 42 chr9 134193420 134194058 -8077386 + L1ME LINE L1 327 1011 -5059 1770 186 7 10 chr9 134194062 134194369 -8077075 + AluJb SINE Alu 6 311 -1 285 279 63 0 chr9 134194633 134194712 -8076732 + L1MC5 LINE L1 7813 7896 -65 898 103 8 0 chr9 134194723 134194840 -8076604 + FLAM_C SINE Alu 1 118 -25 470 316 104 9 chr9 134195442 134195654 -8075790 - MIR SINE MIR 0 262 31 219 301 110 34 chr9 134195750 134195896 -8075548 - MIR SINE MIR -1 261 105 235 312 32 11 chr9 134195972 134196065 -8075379 + MIR SINE MIR 161 255 -7 1538 176 15 67 chr9 134196314 134196643 -8074801 + AluJo SINE Alu 1 312 0 1086 79 7 0 chr9 134196904 134197043 -8074401 - AluSc SINE Alu -169 140 1 374 252 22 22 chr9 134197441 134197576 -8073868 - MIR SINE MIR -97 165 31 355 339 0 6 chr9 134197800 134197974 -8073470 + C-rich Low_complexity Low_complexity 4 176 0 275 282 18 18 chr9 134197941 134198104 -8073340 + (TCTCTG)n Simple_repeat Simple_repeat 6 168 0 * 309 304 103 3 chr9 134198768 134198939 -8072505 - MIR SINE MIR -44 218 32 234 288 82 0 chr9 134199036 134199109 -8072335 - MIR SINE MIR -58 150 72 204 364 64 0 chr9 134199379 134199489 -8071955 - MIR3 SINE MIR -32 176 60 2253 87 31 0 chr9 134200312 134200598 -8070846 + AluSx SINE Alu 1 295 -17 247 324 19 0 chr9 134200715 134200823 -8070621 + MIR SINE MIR 34 143 -65 1548 178 18 28 chr9 134201006 134201292 -8070152 - AluJo SINE Alu -5 307 25 192 203 73 130 chr9 134201380 134201414 -8070030 - MIR SINE MIR -87 175 141 2322 78 3 28 chr9 134201414 134201734 -8069710 - AluSx SINE Alu 0 312 1 192 203 73 130 chr9 134201734 134201822 -8069622 - MIR SINE MIR -121 141 60 278 326 52 22 chr9 134202730 134202865 -8068579 - MIR SINE MIR -110 152 14 268 265 51 20 chr9 134204177 134204275 -8067169 - MIR SINE MIR -119 143 43 191 244 148 52 chr9 134205170 134205285 -8066159 - L2 LINE L2 -1 3271 3146 333 191 0 0 chr9 134205781 134205849 -8065595 + MIR SINE MIR 80 147 -115 211 273 0 45 chr9 134207755 134207843 -8063601 + MIR SINE MIR 68 151 -111 23 33 0 0 chr9 134209024 134209054 -8062390 + AT_rich Low_complexity Low_complexity 1 30 0 755 246 74 20 chr9 134209193 134209437 -8062007 + MIR SINE MIR 2 258 -4 2544 69 0 3 chr9 134210619 134210924 -8060520 - AluSx SINE Alu -8 304 1 290 172 61 51 chr9 134211178 134211278 -8060166 - MLT1I LTR MaLR 0 579 317 1103 308 86 48 chr9 134211822 134212326 -8059118 + L2 LINE L2 2222 2762 -552 2080 119 0 0 chr9 134212326 134212603 -8058841 - AluSx SINE Alu -12 300 24 1103 308 86 48 chr9 134212603 134212809 -8058635 + L2 LINE L2 2762 2959 -355 232 56 28 0 chr9 134212945 134212981 -8058463 + L2 LINE L2 3272 3308 -5 232 333 0 0 chr9 134213468 134213528 -8057916 + L1ME LINE L1 5536 5595 -569 251 127 0 18 chr9 134213888 134213943 -8057501 + (TGAA)n Simple_repeat Simple_repeat 2 55 0 1802 241 86 32 chr9 134214017 134214531 -8056913 + L1ME2 LINE L1 5513 5998 -166 2167 101 10 20 chr9 134214531 134214829 -8056615 - AluSg SINE Alu -15 295 1 1771 154 34 20 chr9 134214830 134215128 -8056316 - AluJo SINE Alu -10 302 1 1802 241 86 32 chr9 134215128 134215230 -8056214 + L1ME2 LINE L1 5997 6164 0 1038 291 119 18 chr9 134215452 134215957 -8055487 + L1MEd LINE L1 274 829 -5290 372 247 140 11 chr9 134216839 134217025 -8054419 - L1M4 LINE L1 -3637 2509 2300 234 0 0 0 chr9 134217132 134217158 -8054286 + (TA)n Simple_repeat Simple_repeat 1 26 0 2332 102 0 3 chr9 134217159 134217462 -8053982 - AluSx SINE Alu -10 302 1 24 0 0 0 chr9 134217466 134217490 -8053954 + AT_rich Low_complexity Low_complexity 1 24 0 302 222 0 25 chr9 134217560 134217641 -8053803 - Charlie2a DNA MER1_type -1310 1552 1474 2518 100 0 0 chr9 134217696 134218007 -8053437 - AluSx SINE Alu -1 311 1 255 170 0 0 chr9 134218024 134218071 -8053373 + (TAGG)n Simple_repeat Simple_repeat 2 48 0 307 303 220 0 chr9 134218129 134218238 -8053206 + L2 LINE L2 2172 2304 -1010 1699 273 41 19 chr9 134218295 134218827 -8052617 + L1MEc LINE L1 62 605 -5791 333 0 0 0 chr9 134218845 134218882 -8052562 + (GA)n Simple_repeat Simple_repeat 1 37 0 252 86 0 0 chr9 134218881 134218916 -8052528 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 891 242 100 64 chr9 134218916 134219317 -8052127 - MLT2B1 LTR ERVL -52 412 1 926 261 151 6 chr9 134219317 134219674 -8051770 + L1MEc LINE L1 600 1008 -5388 2275 135 0 0 chr9 134219677 134219989 -8051455 + AluSx SINE Alu 1 312 0 489 234 31 70 chr9 134220004 134220261 -8051183 + L1MEc LINE L1 1088 1334 -5062 259 196 0 18 chr9 134220441 134220497 -8050947 + L2 LINE L2 3218 3272 0 252 256 0 44 chr9 134220662 134220739 -8050705 - MIR SINE MIR -52 156 82 189 0 0 0 chr9 134220934 134220955 -8050489 + (CCCCG)n Simple_repeat Simple_repeat 1 21 0 324 0 0 0 chr9 134221319 134221355 -8050089 + (CCG)n Simple_repeat Simple_repeat 3 38 0 36 100 0 0 chr9 134221383 134221503 -8049941 + GC_rich Low_complexity Low_complexity 1 120 0 507 175 58 0 chr9 134222105 134222208 -8049236 + MIR3 SINE MIR 82 190 -18 21 57 0 0 chr9 134222957 134222992 -8048452 + AT_rich Low_complexity Low_complexity 1 35 0 2104 93 43 4 chr9 134224217 134224497 -8046947 - AluSq SINE Alu -9 304 14 364 274 60 17 chr9 134224622 134224739 -8046705 - MIR SINE MIR -136 126 5 725 267 5 0 chr9 134224816 134225011 -8046433 - L1M4 LINE L1 -1830 4316 4121 866 241 32 32 chr9 134225026 134225242 -8046202 + MIR SINE MIR 34 249 -13 1967 103 76 31 chr9 134225384 134225675 -8045769 - AluSg SINE Alu -6 304 1 837 255 24 85 chr9 134225823 134225919 -8045525 - MLT1G LTR MaLR -314 276 176 2637 71 0 0 chr9 134225919 134226228 -8045216 + AluY SINE Alu 1 309 -2 837 255 24 85 chr9 134226228 134226362 -8045082 - MLT1G LTR MaLR -414 176 65 2379 97 3 0 chr9 134226362 134226670 -8044774 - AluSq SINE Alu -4 309 1 837 255 24 85 chr9 134226670 134226732 -8044712 - MLT1G LTR MaLR -525 65 1 1989 136 52 0 chr9 134226836 134227123 -8044321 + AluSq SINE Alu 1 302 -11 184 206 0 0 chr9 134227462 134227496 -8043948 + L2 LINE L2 3230 3263 -9 180 0 0 0 chr9 134227536 134227556 -8043888 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2085 131 10 0 chr9 134227558 134227848 -8043596 - AluSx SINE Alu -18 294 2 2232 198 7 11 chr9 134227906 134228356 -8043088 - MER74A LTR ERVL -95 463 16 2294 99 0 29 chr9 134228360 134228674 -8042770 + AluSg SINE Alu 3 307 -3 240 310 103 26 chr9 134228696 134228812 -8042632 - L2 LINE L2 -27 3286 3162 918 267 76 45 chr9 134228836 134229005 -8042439 - L2 LINE L2 -5 3308 3146 2211 135 0 0 chr9 134229005 134229316 -8042128 + AluSq SINE Alu 3 313 0 918 267 76 45 chr9 134229316 134229562 -8041882 - L2 LINE L2 -167 3146 2909 3971 111 39 3 chr9 134229562 134230174 -8041270 + MER51A LTR ERV1 1 634 0 918 267 76 45 chr9 134230174 134230416 -8041028 - L2 LINE L2 -404 2909 2561 640 87 0 48 chr9 134230519 134230622 -8040822 + MER4A LTR ERV1 1 98 -566 1721 171 104 24 chr9 134230622 134230725 -8040719 + MER4A LTR ERV1 261 354 -310 2553 58 0 46 chr9 134230725 134231051 -8040393 - AluY SINE Alu 0 311 1 1721 171 104 24 chr9 134231051 134231321 -8040123 + MER4A LTR ERV1 354 664 0 1963 155 13 10 chr9 134231422 134231725 -8039719 + AluJb SINE Alu 1 304 -8 221 154 0 0 chr9 134232723 134232762 -8038682 + MIR SINE MIR 206 244 -18 454 242 169 28 chr9 134234099 134234277 -8037167 + MIR SINE MIR 3 205 -57 21 0 0 0 chr9 134234332 134234353 -8037091 + AT_rich Low_complexity Low_complexity 1 21 0 2010 89 51 34 chr9 134234432 134234725 -8036719 - AluSx SINE Alu -14 298 1 563 308 49 40 chr9 134234805 134235130 -8036314 - L2 LINE L2 -90 3223 2896 532 293 6 37 chr9 134235485 134235561 -8035883 + MIR SINE MIR 96 173 -89 2311 102 0 9 chr9 134235561 134235876 -8035568 - AluSx SINE Alu 0 312 1 532 293 6 37 chr9 134235876 134235963 -8035481 + MIR SINE MIR 173 254 -8 1082 181 100 202 chr9 134235966 134236357 -8035087 - L2 LINE L2 -416 2898 2469 417 231 0 0 chr9 134236357 134236448 -8034996 - L1 LINE L1 -1899 4247 4157 1082 181 100 202 chr9 134236448 134236943 -8034501 - L2 LINE L2 -845 2469 2021 2500 81 0 0 chr9 134237511 134237806 -8033638 - AluSx SINE Alu -17 295 1 1976 136 0 17 chr9 134239431 134239718 -8031726 + AluJo SINE Alu 1 282 -30 2211 104 23 13 chr9 134239721 134240030 -8031414 - AluSx SINE Alu 0 312 1 2353 75 3 0 chr9 134240041 134240370 -8031074 - AluSp SINE Alu 0 330 1 2271 111 0 3 chr9 134242278 134242608 -8028836 - AluSg SINE Alu 0 310 1 2259 110 3 3 chr9 134243963 134244263 -8027181 + AluSx SINE Alu 1 300 -12 1888 131 18 7 chr9 134244675 134244957 -8026487 + AluSx SINE Alu 21 305 -7 2231 90 17 27 chr9 134244960 134245261 -8026183 + AluY SINE Alu 1 298 -13 2115 114 17 0 chr9 134245303 134245593 -8025851 - AluSc SINE Alu -14 295 1 2373 97 0 0 chr9 134245618 134245917 -8025527 - AluSc SINE Alu -10 299 1 1267 170 107 26 chr9 134246169 134246329 -8025115 - AluJb SINE Alu -19 293 147 1603 144 38 85 chr9 134246329 134246648 -8024796 - AluJo SINE Alu -8 304 1 1267 170 107 26 chr9 134246648 134246758 -8024686 - AluJb SINE Alu -165 147 1 618 183 100 0 chr9 134246943 134247063 -8024381 - FRAM SINE Alu -16 160 29 2083 136 0 26 chr9 134247439 134247608 -8023836 - AluSx SINE Alu -10 302 130 210 37 0 0 chr9 134247608 134247635 -8023809 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2141 107 7 0 chr9 134247638 134247918 -8023526 - AluY SINE Alu -29 282 1 2083 136 0 26 chr9 134247918 134248054 -8023390 - AluSx SINE Alu -184 128 1 231 154 0 0 chr9 134248132 134248171 -8023273 + MER4D LTR ERV1 791 829 -74 2256 94 24 0 chr9 134248230 134248528 -8022916 + AluSx SINE Alu 1 305 -7 1028 186 9 29 chr9 134248721 134248931 -8022513 + AluJb SINE Alu 106 311 -1 441 259 77 28 chr9 134249152 134249288 -8022156 + L2 LINE L2 3164 3309 -4 2102 112 17 3 chr9 134249288 134249582 -8021862 - AluSx SINE Alu -14 298 1 2426 68 0 7 chr9 134249666 134249960 -8021484 + AluY SINE Alu 7 298 -13 1942 135 37 0 chr9 134250059 134250356 -8021088 + AluSx SINE Alu 1 308 -4 663 268 72 30 chr9 134250721 134250956 -8020488 + MIR SINE MIR 6 250 -12 2281 131 0 0 chr9 134250982 134251399 -8020045 + AluSq SINE Alu 1 417 0 2554 59 3 0 chr9 134251781 134252084 -8019360 - AluSp SINE Alu -9 304 1 299 224 208 24 chr9 134254385 134254510 -8016934 + MIR3 SINE MIR 54 201 -7 287 284 42 0 chr9 134255399 134255494 -8015950 + L1MC/D LINE L1 5543 5641 -2167 1982 166 105 103 chr9 134255518 134255793 -8015651 + Charlie1a DNA MER1_type 30 303 -2458 2261 89 0 32 chr9 134255793 134256108 -8015336 - AluSx SINE Alu -7 305 1 1982 166 105 103 chr9 134256108 134256460 -8014984 + Charlie1a DNA MER1_type 303 658 -797 1235 123 0 0 chr9 134256460 134256630 -8014814 - AluSq SINE Alu -11 302 133 767 145 35 58 chr9 134256659 134256751 -8014693 + Charlie1a DNA MER1_type 715 803 -1958 2190 145 0 0 chr9 134256751 134257054 -8014390 - AluSx SINE Alu -9 303 1 767 145 35 58 chr9 134257054 134257133 -8014311 + Charlie1a DNA MER1_type 803 882 -573 805 197 7 0 chr9 134257133 134257275 -8014169 + AluSq/x SINE Alu 1 143 -170 482 167 9 74 chr9 134257278 134257386 -8014058 + AluJo/FRAM SINE Alu 197 297 -15 343 189 47 134 chr9 134257389 134257443 -8014001 + Charlie1a DNA MER1_type 914 971 -1790 2345 84 7 3 chr9 134257443 134257742 -8013702 + AluSp SINE Alu 1 300 -13 2276 124 0 0 chr9 134257747 134258053 -8013391 + AluSx SINE Alu 1 306 -6 343 189 47 134 chr9 134258053 134258119 -8013325 + Charlie1a DNA MER1_type 975 1029 -426 577 199 40 7 chr9 134258159 134258310 -8013134 + Charlie1a DNA MER1_type 1291 1446 -9 1672 175 10 14 chr9 134258310 134258601 -8012843 + AluJo SINE Alu 1 290 -22 2102 144 0 10 chr9 134258958 134259271 -8012173 + AluSx SINE Alu 1 310 -2 1286 237 106 38 chr9 134259790 134260638 -8010806 - L2 LINE L2 -5 3308 2403 693 56 0 33 chr9 134260638 134260728 -8010716 + AluJb SINE Alu 209 295 -17 2181 121 3 0 chr9 134260807 134261104 -8010340 + AluSx SINE Alu 1 298 -14 1961 148 0 7 chr9 134261137 134261441 -8010003 + AluJb SINE Alu 1 302 0 1414 177 38 39 chr9 134261638 134262185 -8009259 + L1M2 LINE L1 2588 3127 -3721 2361 101 3 0 chr9 134262187 134262493 -8008951 + AluSq SINE Alu 6 312 -1 2291 102 7 0 chr9 134263039 134263342 -8008102 + AluSx SINE Alu 1 305 -7 234 221 10 29 chr9 134263508 134263583 -8007861 + MIR SINE MIR 110 181 -81 232 176 110 44 chr9 134264147 134264238 -8007206 - L2 LINE L2 -24 3248 3152 242 343 20 20 chr9 134264413 134264512 -8006932 + MIR SINE MIR 14 112 -150 340 342 106 0 chr9 134264724 134264885 -8006559 + MIR SINE MIR 85 262 0 1883 163 6 16 chr9 134265052 134265365 -8006079 - AluSx SINE Alu -2 310 1 2132 107 4 0 chr9 134265380 134265700 -8005744 - AluSx SINE Alu 0 321 1 497 299 0 8 chr9 134266444 134266578 -8004866 + MIR SINE MIR 13 145 -117 205 326 33 33 chr9 134266719 134266811 -8004633 + MIR SINE MIR 158 249 -13 186 333 78 33 chr9 134266902 134266934 -8004510 + L2 LINE L2 2943 2972 -300 2222 108 3 3 chr9 134266934 134267231 -8004213 + AluSx SINE Alu 1 297 -15 2482 51 3 3 chr9 134267232 134267525 -8003919 + AluY SINE Alu 1 293 -18 186 333 78 33 chr9 134267525 134267580 -8003864 + L2 LINE L2 2971 3036 -236 276 100 0 0 chr9 134267662 134267702 -8003742 + (T)n Simple_repeat Simple_repeat 1 40 0 462 289 13 0 chr9 134267820 134267979 -8003465 + L1M4 LINE L1 4095 4255 -1891 * 755 195 113 68 chr9 134267976 134268197 -8003247 + L1M4 LINE L1 4539 4769 -1377 2009 70 0 0 chr9 134268201 134268479 -8002965 + AluY SINE Alu 39 316 0 2341 125 0 0 chr9 134268484 134268901 -8002543 + AluSq SINE Alu 1 417 0 2554 59 3 0 chr9 134269283 134269586 -8001858 - AluSp SINE Alu -9 304 1 2244 113 3 3 chr9 134321238 134321538 -7949906 + AluSx SINE Alu 1 300 -12 738 117 19 0 chr9 134321950 134322053 -7949391 + AluSq/x SINE Alu 21 125 -187 472 177 9 9 chr9 134322176 134322289 -7949155 + C-rich Low_complexity Low_complexity 2 114 0 23 33 0 0 chr9 134322335 134322365 -7949079 + AT_rich Low_complexity Low_complexity 1 30 0 288 226 0 0 chr9 134322367 134322460 -7948984 + C-rich Low_complexity Low_complexity 1 93 0 204 67 0 0 chr9 134322512 134322542 -7948902 + (A)n Simple_repeat Simple_repeat 1 30 0 372 107 0 0 chr9 134322555 134322645 -7948799 + Alu SINE Alu 237 326 0 510 262 24 0 chr9 134322661 134322787 -7948657 - MER82 DNA MER2_type -524 129 1 211 263 18 0 chr9 134322798 134322849 -7948595 - MIR SINE MIR -92 170 118 2391 98 0 0 chr9 134322849 134323156 -7948288 - AluSx SINE Alu -5 307 1 700 55 0 33 chr9 134323235 134323326 -7948118 - AluJb SINE Alu -16 296 209 1296 240 107 38 chr9 134323326 134324174 -7947270 + L2 LINE L2 2403 3308 -5 1405 139 0 14 chr9 134324692 134324908 -7946536 - AluSg/x SINE Alu -2 310 98 331 280 23 91 chr9 134325462 134325637 -7945807 - L1 LINE L1 -2906 3240 3078 28 0 0 0 chr9 134325652 134325680 -7945764 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr9 134325699 134325731 -7945713 + AT_rich Low_complexity Low_complexity 1 32 0 476 257 19 0 chr9 134326544 134326649 -7944795 - L2 LINE L2 -3 3269 3163 417 280 50 41 chr9 134326959 134327136 -7944308 + MIR SINE MIR 44 216 -40 2050 107 7 0 chr9 134327199 134327518 -7943926 + AluSx SINE Alu 1 321 0 382 263 0 21 chr9 134427612 134427707 -7843737 + MIR SINE MIR 75 167 -95 2313 82 3 0 chr9 134427726 134428029 -7843415 + AluY SINE Alu 1 304 -7 2263 86 0 7 chr9 134428035 134428338 -7843106 + AluSc SINE Alu 1 301 -8 1725 128 58 0 chr9 134428338 134428612 -7842832 - AluJo SINE Alu -22 290 1 509 160 160 9 chr9 134433757 134433890 -7837554 + AluSg/x SINE Alu 162 310 0 2248 92 10 0 chr9 134434190 134434485 -7836959 - AluSq SINE Alu -15 298 1 541 110 0 0 chr9 134434733 134434806 -7836638 - Alu SINE Alu -236 73 1 2238 92 0 3 chr9 134434867 134435162 -7836282 + AluSc SINE Alu 1 294 -15 2366 114 34 0 chr9 134436022 134436372 -7835072 + THE1B LTR MaLR 3 364 0 255 189 0 38 chr9 134436444 134436497 -7834947 + MIR SINE MIR 212 262 0 396 291 144 50 chr9 134438054 134438415 -7833029 + L1MC5 LINE L1 5508 5902 -1906 2351 73 3 0 chr9 134438526 134438828 -7832616 + AluSp SINE Alu 1 303 -10 186 250 0 42 chr9 134438845 134438893 -7832551 + MER5A DNA MER1_type 93 138 -51 1038 102 0 0 chr9 134439452 134439589 -7831855 + AluSq/x SINE Alu 1 137 -176 2452 48 6 22 chr9 134439590 134439904 -7831540 + AluY SINE Alu 1 309 -2 1911 127 0 41 chr9 134439917 134440232 -7831212 + AluSq SINE Alu 1 302 -11 747 265 22 9 chr9 134440234 134440457 -7830987 + L1MC5 LINE L1 7003 7228 -733 2188 68 7 0 chr9 134440512 134440791 -7830653 + AluSq SINE Alu 1 281 -32 223 91 23 23 chr9 134440794 134440838 -7830606 + (GGAGA)n Simple_repeat Simple_repeat 5 48 0 748 240 99 24 chr9 134440864 134441156 -7830288 + L1MC5 LINE L1 7249 7562 -399 2223 109 0 3 chr9 134441195 134441508 -7829936 + AluSx SINE Alu 1 312 0 593 214 63 31 chr9 134441991 134442150 -7829294 + MIR SINE MIR 77 240 -22 1929 123 40 7 chr9 134446525 134446826 -7824618 + AluSx SINE Alu 1 311 -1 414 282 169 0 chr9 134447108 134447250 -7824194 + MIR SINE MIR 2 167 -95 2359 74 0 0 chr9 134447455 134447752 -7823692 - AluY SINE Alu -14 297 1 1729 125 18 0 chr9 134447854 134448126 -7823318 + AluSq SINE Alu 37 313 0 2332 77 3 6 chr9 134448381 134448692 -7822752 + AluY SINE Alu 2 311 0 463 308 122 18 chr9 134449017 134449296 -7822148 + L1MC/D LINE L1 5485 5792 -2016 679 155 16 47 chr9 134449663 134449792 -7821652 + FLAM_A SINE Alu 1 125 -8 663 273 70 9 chr9 134450369 134450494 -7820950 + MIR SINE MIR 20 136 -126 1252 200 4 0 chr9 134450494 134450729 -7820715 - MER46A DNA MER2_type 0 236 1 663 273 70 9 chr9 134450729 134450830 -7820614 + MIR SINE MIR 136 260 -2 1985 132 7 3 chr9 134450869 134451172 -7820272 - AluJb SINE Alu -7 305 2 2074 104 17 13 chr9 134452093 134452392 -7819052 + AluSx SINE Alu 1 300 -12 576 322 108 31 chr9 134454087 134454447 -7816997 + L2 LINE L2 2925 3312 -1 2169 93 27 0 chr9 134456660 134456960 -7814484 + AluSg SINE Alu 2 309 -1 315 230 111 56 chr9 134458985 134459148 -7812296 + L1 LINE L1 4675 4846 -1300 305 312 32 51 chr9 134459234 134459391 -7812053 + L1MC4a LINE L1 5431 5584 -537 825 231 63 29 chr9 134459466 134459704 -7811740 - MER112 DNA MER1_type -12 248 3 411 294 38 0 chr9 134459705 134459891 -7811553 + L1MC4a LINE L1 5699 5756 -428 1693 175 0 3 chr9 134460116 134460250 -7811194 + AluSx SINE Alu 1 134 -175 2122 111 3 3 chr9 134460250 134460556 -7810888 + AluSq SINE Alu 1 306 -7 1693 175 0 3 chr9 134460556 134460731 -7810713 + AluSx SINE Alu 134 309 0 232 283 97 35 chr9 134460786 134460899 -7810545 + MIR SINE MIR 41 160 -102 22 0 0 0 chr9 134461213 134461235 -7810209 + AT_rich Low_complexity Low_complexity 1 22 0 2039 111 14 0 chr9 134462923 134463212 -7808232 + AluSq SINE Alu 1 293 -20 1895 106 0 0 chr9 134463217 134463473 -7807971 + AluSg SINE Alu 54 309 -1 1707 146 0 58 chr9 134464130 134464460 -7806984 + AluSx SINE Alu 1 311 -1 2015 113 3 41 chr9 134464560 134464878 -7806566 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr9 134465048 134465077 -7806367 + AT_rich Low_complexity Low_complexity 1 29 0 1753 42 0 5 chr9 134465478 134465691 -7805753 + AluY SINE Alu 64 275 -36 304 21 62 0 chr9 134465694 134465742 -7805702 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 2061 133 0 0 chr9 134465832 134466133 -7805311 + AluSx SINE Alu 1 301 -11 458 254 176 64 chr9 134466732 134466822 -7804622 + L1ME4a LINE L1 5289 5368 -753 2018 114 10 0 chr9 134466822 134467119 -7804325 + AluSx SINE Alu 1 300 -12 458 254 176 64 chr9 134467119 134467358 -7804086 + L1ME4a LINE L1 5368 5655 -466 423 252 0 38 chr9 134467600 134467679 -7803765 + L1ME4a LINE L1 5968 6040 -81 2170 105 0 7 chr9 134467679 134467984 -7803460 - AluSq SINE Alu -10 303 1 423 252 0 38 chr9 134467984 134468063 -7803381 + L1ME4a LINE L1 6040 6120 -1 1838 135 0 53 chr9 134468102 134468420 -7803024 - AluSx SINE Alu -11 301 1 1074 45 8 0 chr9 134468423 134468555 -7802889 - AluSq/x SINE Alu -180 133 1 1383 92 57 52 chr9 134468574 134468678 -7802766 - MER30 DNA MER1_type 0 230 128 1709 78 156 4 chr9 134468678 134468935 -7802509 + AluY SINE Alu 1 296 -5 1383 92 57 52 chr9 134468935 134469059 -7802385 - MER30 DNA MER1_type -102 128 1 343 253 63 0 chr9 134469176 134469255 -7802189 + L1MC5 LINE L1 7813 7896 -65 864 94 8 0 chr9 134469266 134469383 -7802061 + FLAM_C SINE Alu 1 118 -25 492 316 104 9 chr9 134469985 134470197 -7801247 - MIR SINE MIR 0 262 31 238 301 110 34 chr9 134470293 134470439 -7801005 - MIR SINE MIR -1 261 105 245 312 32 11 chr9 134470515 134470608 -7800836 + MIR SINE MIR 161 255 -7 1374 176 15 67 chr9 134470858 134471187 -7800257 + AluJo SINE Alu 1 312 0 23 33 0 0 chr9 134471643 134471673 -7799771 + AT_rich Low_complexity Low_complexity 1 30 0 799 250 70 16 chr9 134471812 134472056 -7799388 + MIR SINE MIR 2 258 -4 2385 69 0 3 chr9 134473238 134473543 -7797901 - AluSx SINE Alu -8 304 1 339 168 14 7 chr9 134474303 134474450 -7796994 + GA-rich Low_complexity Low_complexity 1 148 0 203 139 47 23 chr9 134474675 134474718 -7796726 + (CCCGG)n Simple_repeat Simple_repeat 2 45 0 190 127 0 36 chr9 134474731 134474786 -7796658 + (CCCCCG)n Simple_repeat Simple_repeat 4 56 0 213 189 14 68 chr9 134474847 134474921 -7796523 + C-rich Low_complexity Low_complexity 4 73 0 408 290 127 61 chr9 134475847 134476092 -7795352 - MIR SINE MIR 0 262 2 344 288 38 15 chr9 134477457 134477589 -7793855 - MIR SINE MIR -69 193 59 1429 94 0 10 chr9 134477756 134477957 -7793487 + AluSg/x SINE Alu 95 293 -16 243 311 165 12 chr9 134478007 134478171 -7793273 + MER5A DNA MER1_type 1 189 0 2172 115 3 0 chr9 134478177 134478482 -7792962 + AluSx SINE Alu 1 306 -6 651 246 96 18 chr9 134479173 134479394 -7792050 + MIR SINE MIR 27 262 0 308 286 125 76 chr9 134479967 134480191 -7791253 - HAL1 LINE L1 0 2507 2273 694 198 68 27 chr9 134480208 134480430 -7791014 - HAL1 LINE L1 -299 2208 1978 2301 49 0 16 chr9 134480499 134480803 -7790641 - AluY SINE Alu -10 301 3 1220 211 99 90 chr9 134480809 134481353 -7790091 - HAL1 LINE L1 -763 1744 1196 850 112 0 30 chr9 134481353 134481487 -7789957 - AluSp/q SINE Alu -11 302 173 1125 250 63 129 chr9 134481491 134481558 -7789886 - HAL1 LINE L1 -1307 1200 1130 456 132 53 0 chr9 134481558 134481634 -7789810 - MADE1 DNA Mariner 0 80 1 1125 250 63 129 chr9 134481634 134481717 -7789727 - HAL1 LINE L1 -1377 1130 1043 1582 123 97 11 chr9 134481717 134482007 -7789437 + AluJb SINE Alu 2 312 0 1125 250 63 129 chr9 134482007 134482145 -7789299 - HAL1 LINE L1 -1464 1043 897 1950 131 3 0 chr9 134482145 134482466 -7788978 - AluSx SINE Alu 0 326 5 1125 250 63 129 chr9 134482466 134482984 -7788460 - HAL1 LINE L1 -1610 897 482 2454 53 0 0 chr9 134482984 134483286 -7788158 - AluY SINE Alu -9 302 1 1125 250 63 129 chr9 134483286 134483588 -7787856 - HAL1 LINE L1 -2025 482 161 1723 123 108 0 chr9 134483662 134483930 -7787514 + AluSx SINE Alu 1 297 -15 471 217 87 0 chr9 134483954 134484069 -7787375 - MIR SINE MIR -110 152 28 1960 177 67 65 chr9 134485527 134486046 -7785398 + MLT2B1 LTR ERVL 1 520 0 752 277 77 41 chr9 134486217 134486556 -7784888 + MLT1J LTR MaLR 20 370 -141 3454 185 30 74 chr9 134486959 134486986 -7784458 + L1MB8 LINE L1 5234 5261 -917 2315 99 0 3 chr9 134486986 134487280 -7784164 + AluSg1 SINE Alu 1 293 -16 3454 185 30 74 chr9 134487280 134487515 -7783929 + L1MB8 LINE L1 5261 5505 -673 637 168 109 0 chr9 134487515 134487634 -7783810 + FLAM_A SINE Alu 2 133 0 3454 185 30 74 chr9 134487634 134487810 -7783634 + L1MB8 LINE L1 5505 5687 -491 2328 107 0 7 chr9 134487810 134487945 -7783499 + AluSq SINE Alu 1 135 -178 2397 85 7 0 chr9 134487945 134488252 -7783192 + AluY SINE Alu 2 310 -1 2328 107 0 7 chr9 134488252 134488416 -7783028 + AluSq SINE Alu 135 298 -15 3454 185 30 74 chr9 134488416 134488851 -7782593 + L1MB8 LINE L1 5687 6057 -121 2412 86 0 10 chr9 134488851 134489155 -7782289 + AluSc SINE Alu 1 301 -8 3454 185 30 74 chr9 134489155 134489272 -7782172 + L1MB8 LINE L1 6057 6178 0 2325 101 0 13 chr9 134490240 134490548 -7780896 + AluSg SINE Alu 1 304 -6 2443 93 0 7 chr9 134490698 134491008 -7780436 - AluSg SINE Alu -1 309 2 1169 238 27 42 chr9 134491264 134491592 -7779852 + L1ME1 LINE L1 4812 5134 -1012 2090 153 0 0 chr9 134491592 134491893 -7779551 - AluSx SINE Alu -11 301 1 1169 238 27 42 chr9 134491893 134491972 -7779472 + L1ME1 LINE L1 5134 5213 -933 1914 214 64 15 chr9 134492016 134492339 -7779105 + L1ME1 LINE L1 5531 5886 -280 4859 32 2 0 chr9 134492339 134492929 -7778515 - LTR10C LTR ERV1 0 591 1 1914 214 64 15 chr9 134492929 134493077 -7778367 + L1ME1 LINE L1 5886 6025 -141 2170 79 0 14 chr9 134493083 134493362 -7778082 + AluSx SINE Alu 9 283 -29 889 147 13 0 chr9 134493362 134493512 -7777932 + MLT-int LTR MaLR 1399 1550 -185 827 129 24 0 chr9 134493606 134493730 -7777714 + FLAM_C SINE Alu 1 127 -6 21 0 0 0 chr9 134493730 134493751 -7777693 + AT_rich Low_complexity Low_complexity 1 21 0 1349 259 82 24 chr9 134493751 134494034 -7777410 - L2 LINE L2 -246 3067 2802 2419 92 13 0 chr9 134494034 134494340 -7777104 - AluSq SINE Alu -3 310 1 1349 259 82 24 chr9 134494340 134494725 -7776719 - L2 LINE L2 -511 2802 2349 2410 89 13 0 chr9 134494725 134495028 -7776416 - AluSx SINE Alu -5 307 1 1349 259 82 24 chr9 134495028 134495050 -7776394 - L2 LINE L2 -964 2349 2330 251 169 92 0 chr9 134495071 134495136 -7776308 - L1M4 LINE L1 -1459 4756 4686 2556 68 0 0 chr9 134495176 134495483 -7775961 - AluY SINE Alu -3 308 2 2433 220 89 80 chr9 134495489 134495766 -7775678 - L1MEc LINE L1 -2701 3514 3241 2318 104 0 7 chr9 134495766 134496075 -7775369 - AluSc SINE Alu -2 307 1 2433 220 89 80 chr9 134496075 134496186 -7775258 - L1MEc LINE L1 -2974 3241 3132 278 157 71 14 chr9 134496186 134496256 -7775188 - Tigger5 DNA MER2_type 0 2323 2250 2433 220 89 80 chr9 134496256 134496490 -7774954 - L1MEc LINE L1 -3083 3132 2902 2469 77 0 7 chr9 134496490 134496800 -7774644 - AluSc SINE Alu -1 308 1 2433 220 89 80 chr9 134496800 134496847 -7774597 - L1MEc LINE L1 -3313 2902 2857 2298 90 13 3 chr9 134496847 134497148 -7774296 - AluSq SINE Alu -9 304 1 2433 220 89 80 chr9 134497148 134497706 -7773738 - L1MEc LINE L1 -3358 2857 2305 1550 158 52 41 chr9 134497706 134497997 -7773447 - AluJo SINE Alu -18 294 1 2433 220 89 80 chr9 134497997 134498142 -7773302 - L1MEc LINE L1 -3910 2305 2163 2226 94 0 11 chr9 134498142 134498428 -7773016 - AluSg SINE Alu -4 306 24 2433 220 89 80 chr9 134498428 134498764 -7772680 - L1MEc LINE L1 -4052 2163 1759 627 134 0 18 chr9 134498765 134498877 -7772567 - FRAM SINE Alu -4 172 63 1329 266 58 45 chr9 134498878 134499539 -7771905 - L1MEc LINE L1 -4640 1756 1088 2248 138 0 0 chr9 134499554 134499866 -7771578 - AluSx SINE Alu 0 312 1 926 261 151 6 chr9 134499869 134500226 -7771218 - L1MEc LINE L1 -5388 1008 600 891 242 100 64 chr9 134500226 134500627 -7770817 + MLT2B1 LTR ERVL 1 461 -52 234 91 0 0 chr9 134500627 134500660 -7770784 + (CA)n Simple_repeat Simple_repeat 1 33 0 * 315 0 0 0 chr9 134500659 134500694 -7770750 + (TC)n Simple_repeat Simple_repeat 1 35 0 1699 273 41 19 chr9 134500712 134501244 -7770200 - L1MEc LINE L1 -5791 605 62 307 303 220 0 chr9 134501301 134501410 -7770034 - L2 LINE L2 -1010 2304 2172 255 170 0 0 chr9 134501468 134501515 -7769929 + (CCTA)n Simple_repeat Simple_repeat 2 48 0 2507 103 0 0 chr9 134501532 134501844 -7769600 + AluSx SINE Alu 1 312 0 302 222 0 25 chr9 134501899 134501980 -7769464 + Charlie2a DNA MER1_type 1474 1552 -1310 24 0 0 0 chr9 134502050 134502074 -7769370 + AT_rich Low_complexity Low_complexity 1 24 0 2332 102 0 3 chr9 134502078 134502381 -7769063 + AluSx SINE Alu 1 302 -10 216 0 0 0 chr9 134502382 134502406 -7769038 + (TA)n Simple_repeat Simple_repeat 1 24 0 571 144 25 69 chr9 134502415 134502535 -7768909 + Charlie2a DNA MER1_type 2710 2823 -39 1971 141 32 0 chr9 134502535 134502819 -7768625 + AluSx SINE Alu 1 293 -19 571 144 25 69 chr9 134502819 134502858 -7768586 + Charlie2a DNA MER1_type 2823 2862 0 2311 89 0 3 chr9 134502915 134503206 -7768238 - AluSg SINE Alu -20 290 1 312 236 58 63 chr9 134503221 134503395 -7768049 + L1MC4a LINE L1 5814 5986 -1822 641 165 0 39 chr9 134503415 134503542 -7767902 - FLAM_A SINE Alu -11 122 1 2203 105 0 17 chr9 134504697 134505012 -7766432 + AluSg SINE Alu 1 310 0 2342 67 11 0 chr9 134505478 134505761 -7765683 - AluSp SINE Alu -18 295 10 1683 99 0 17 chr9 134505767 134506000 -7765444 - AluY SINE Alu -82 229 1 921 178 20 0 chr9 134506001 134506147 -7765297 - FRAM SINE Alu -14 162 14 1633 257 85 96 chr9 134506637 134506737 -7764707 + L1ME LINE L1 234 334 -5746 2130 103 0 4 chr9 134506737 134507044 -7764400 + AluSg SINE Alu 1 306 0 1633 257 85 96 chr9 134507044 134507686 -7763758 + L1ME LINE L1 334 952 -5128 1862 164 7 19 chr9 134507686 134507996 -7763448 + AluJb SINE Alu 6 311 -1 1633 257 85 96 chr9 134507996 134508547 -7762897 + L1ME LINE L1 952 1507 -4573 2225 112 7 3 chr9 134508550 134508846 -7762598 + AluSc SINE Alu 1 297 -12 2207 110 13 0 chr9 134508847 134509155 -7762289 + AluSx SINE Alu 1 312 0 1319 209 44 93 chr9 134509189 134509602 -7761842 + L1ME1 LINE L1 5658 6041 -125 729 92 0 0 chr9 134509602 134509711 -7761733 - L1PB1 LINE L1 0 6151 6043 1319 209 44 93 chr9 134509711 134509824 -7761620 + L1ME1 LINE L1 6041 6158 -8 2279 107 0 3 chr9 134509903 134510201 -7761243 + AluSg SINE Alu 1 297 -13 470 302 64 15 chr9 134510393 134510595 -7760849 - MIR SINE MIR 0 262 51 1633 269 97 44 chr9 134510596 134511087 -7760357 + Charlie2b DNA MER1_type 12 556 -2226 2346 90 13 13 chr9 134511087 134511388 -7760056 - AluSg SINE Alu -9 301 1 1633 269 97 44 chr9 134511388 134511627 -7759817 + Charlie2b DNA MER1_type 556 781 -2001 941 253 33 18 chr9 134511602 134511875 -7759569 + Charlie2b DNA MER1_type 1105 1381 -1401 * 331 125 116 0 chr9 134512397 134512462 -7758982 + AluS SINE Alu 2 62 -238 23 0 0 29 chr9 134512625 134512644 -7758800 + AT_rich Low_complexity Low_complexity 1 20 -13 2176 115 3 0 chr9 134512644 134512931 -7758513 - AluSx SINE Alu -24 288 1 23 0 0 29 chr9 134512931 134512945 -7758499 + AT_rich Low_complexity Low_complexity 20 33 0 411 19 0 19 chr9 134512945 134512998 -7758446 - MER4E LTR ERV1 -62 704 653 501 252 69 25 chr9 134513127 134513286 -7758158 - MIR SINE MIR -77 185 20 886 158 18 12 chr9 134513642 134513807 -7757637 + MER2 DNA MER2_type 1 166 -179 233 236 0 0 chr9 134514194 134514249 -7757195 + MLT1I LTR MaLR 72 126 -283 2368 94 0 0 chr9 134514296 134514595 -7756849 + AluY SINE Alu 1 299 -12 240 330 25 17 chr9 134514754 134514872 -7756572 - MIR SINE MIR -65 143 25 244 111 167 0 chr9 134515337 134515391 -7756053 - L3b LINE CR1 -197 1386 1324 196 280 131 28 chr9 134515383 134515490 -7755954 - L2 LINE L2 -19 3253 3136 * 212 242 0 15 chr9 134516997 134517063 -7754381 - MIR3 SINE MIR -130 78 14 275 282 18 18 chr9 134517888 134518051 -7753393 + (CAGAGA)n Simple_repeat Simple_repeat 6 168 0 * 355 339 0 6 chr9 134518018 134518192 -7753252 + G-rich Low_complexity Low_complexity 4 176 0 342 259 22 22 chr9 134518416 134518551 -7752893 + MIR SINE MIR 31 165 -97 2189 114 3 3 chr9 134518949 134519256 -7752188 + AluSc SINE Alu 1 307 -2 396 272 8 24 chr9 134519403 134519528 -7751916 - MIR SINE MIR -60 148 26 270 261 14 0 chr9 134519613 134519682 -7751762 + MIR SINE MIR 186 255 -7 385 219 116 65 chr9 134519754 134519909 -7751535 + MER104 DNA Tc2 1 163 -17 343 201 15 116 chr9 134520216 134520415 -7751029 + L2 LINE L2 2918 3096 -176 485 134 5 80 chr9 134521703 134522312 -7749132 + (TG)n Simple_repeat Simple_repeat 1 563 0 299 126 0 106 chr9 134523107 134523305 -7748139 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 628 76 0 91 chr9 134523321 134523519 -7747925 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 197 348 11 0 chr9 134523929 134524018 -7747426 + L3 LINE CR1 1266 1355 -222 258 302 23 41 chr9 134524402 134524574 -7746870 + L2 LINE L2 2846 3014 -258 201 176 0 0 chr9 134525223 134525257 -7746187 + A-rich Low_complexity Low_complexity 1 34 0 1197 131 0 3 chr9 134525285 134525581 -7745863 + (TGG)n Simple_repeat Simple_repeat 1 296 0 512 303 30 51 chr9 134525589 134525823 -7745621 - MIR SINE MIR 0 262 34 232 289 33 25 chr9 134526061 134526182 -7745262 - MIR3 SINE MIR -73 135 14 316 311 11 0 chr9 134527380 134527470 -7743974 + MIR3 SINE MIR 116 206 -2 280 266 88 26 chr9 134529085 134529198 -7742246 - MIR SINE MIR -70 192 73 2157 99 14 7 chr9 134529216 134529508 -7741936 + AluSx SINE Alu 1 294 -18 516 263 54 71 chr9 134529517 134529706 -7741738 - MIR SINE MIR -6 256 70 2305 95 3 10 chr9 134529706 134530002 -7741442 - AluSc SINE Alu -15 294 1 516 263 54 71 chr9 134530002 134530052 -7741392 - MIR SINE MIR -192 70 21 201 129 0 0 chr9 134530598 134530629 -7740815 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 237 33 0 0 chr9 134530695 134530725 -7740719 + (TG)n Simple_repeat Simple_repeat 1 30 0 188 321 74 0 chr9 134530876 134530957 -7740487 + L2 LINE L2 3208 3294 -19 388 237 8 76 chr9 134531320 134531451 -7739993 - MIR SINE MIR -71 191 70 219 36 0 0 chr9 134532187 134532215 -7739229 + (TG)n Simple_repeat Simple_repeat 2 29 0 238 267 111 0 chr9 134532520 134532610 -7738834 + MIR SINE MIR 47 146 -116 237 256 154 34 chr9 134533107 134533224 -7738220 + MIR SINE MIR 31 161 -101 214 264 44 44 chr9 134533365 134533456 -7737988 - MIR SINE MIR -63 145 72 21 36 0 0 chr9 134533828 134533856 -7737588 + GC_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr9 134534426 134534461 -7736983 + GC_rich Low_complexity Low_complexity 1 35 0 201 314 24 16 chr9 134535094 134535218 -7736226 + C-rich Low_complexity Low_complexity 4 128 0 224 213 0 21 chr9 134535596 134535643 -7735801 + MIR SINE MIR 25 70 -138 291 270 50 20 chr9 134535746 134535846 -7735598 + MIR3 SINE MIR 78 180 -28 222 163 41 41 chr9 134535892 134535941 -7735503 + MIR SINE MIR 85 133 -75 182 261 0 0 chr9 134540514 134540560 -7730884 - L2 LINE L2 -844 2470 2425 1744 134 20 20 chr9 134540946 134541238 -7730206 - AluJo SINE Alu -20 292 1 451 275 16 31 chr9 134541876 134542169 -7729275 + G-rich Low_complexity Low_complexity 1 288 0 408 213 22 60 chr9 134543283 134543466 -7727978 + G-rich Low_complexity Low_complexity 5 180 0 2782 178 6 8 chr9 134543624 134544159 -7727285 - L1PA15 LINE L1 -110 6055 5522 2182 91 3 60 chr9 134544507 134544838 -7726606 - AluSx SINE Alu 0 312 1 1365 172 55 0 chr9 134544840 134545096 -7726348 + Tigger3(Golem) DNA MER2_type 2759 3028 -1 388 205 36 12 chr9 134545099 134545182 -7726262 + L1MC4 LINE L1 6610 6694 -1348 2014 129 6 6 chr9 134545225 134545536 -7725908 + AluSx SINE Alu 1 311 -1 1513 208 43 17 chr9 134545536 134545893 -7725551 - MLT2D LTR ERVL -45 475 1 758 365 81 9 chr9 134545929 134546665 -7724779 + ERVL LTR ERVL 2993 3740 -1914 2053 91 3 18 chr9 134547223 134547532 -7723912 + AluSp SINE Alu 1 305 0 224 343 0 0 chr9 134547932 134547999 -7723445 + MIR SINE MIR 195 261 -1 2080 158 0 0 chr9 134548078 134548389 -7723055 + AluJb SINE Alu 1 311 -1 300 354 62 7 chr9 134548409 134548553 -7722891 + HAL1 LINE L1 1141 1292 -1215 288 296 177 60 chr9 134548687 134549021 -7722423 - L2 LINE L2 -96 3176 2804 373 304 103 3 chr9 134550145 134550316 -7721128 - MIR SINE MIR -44 218 32 253 288 82 0 chr9 134550413 134550486 -7720958 - MIR SINE MIR -58 150 72 240 364 64 0 chr9 134550756 134550866 -7720578 - MIR3 SINE MIR -32 176 60 186 206 0 164 chr9 134551641 134551688 -7719756 - MER5A DNA MER1_type -18 171 138 2147 87 31 0 chr9 134551688 134551974 -7719470 + AluSx SINE Alu 1 295 -17 186 206 0 164 chr9 134551974 134551999 -7719445 - MER5A DNA MER1_type -51 138 111 295 324 19 0 chr9 134552091 134552199 -7719245 + MIR SINE MIR 34 143 -65 1484 178 18 28 chr9 134552382 134552668 -7718776 - AluJo SINE Alu -5 307 25 2209 89 3 16 chr9 134552795 134553110 -7718334 - AluSx SINE Alu -1 311 1 212 290 32 43 chr9 134553110 134553203 -7718241 - MIR SINE MIR -110 152 61 317 326 52 22 chr9 134554106 134554241 -7717203 - MIR SINE MIR -110 152 14 207 297 25 68 chr9 134554373 134554491 -7716953 + MIR SINE MIR 104 216 -46 213 359 0 0 chr9 134556020 134556084 -7715360 + (CACG)n Simple_repeat Simple_repeat 4 67 0 350 330 16 23 chr9 134558101 134558266 -7713178 + MIR SINE MIR 3 153 -55 371 344 61 0 chr9 134558313 134558476 -7712968 + MIR SINE MIR 56 228 -34 318 317 172 11 chr9 134562908 134563088 -7708356 + MIR SINE MIR 48 256 -6 2235 90 7 0 chr9 134564369 134564669 -7706775 + AluSq SINE Alu 1 302 -11 2015 106 17 7 chr9 134564882 134565174 -7706270 - AluSg1 SINE Alu -14 295 1 303 268 31 55 chr9 134565176 134565303 -7706141 + MER112 DNA MER1_type 132 255 -5 2225 104 3 0 chr9 134565763 134566061 -7705383 + AluSx SINE Alu 3 301 -11 220 319 69 0 chr9 134566692 134566764 -7704680 - MIR SINE MIR -79 183 107 344 287 85 16 chr9 134567038 134567167 -7704277 + MIR SINE MIR 88 225 -37 307 279 58 10 chr9 134567707 134567811 -7703633 + MIR SINE MIR 32 140 -122 245 269 148 9 chr9 134567898 134568006 -7703438 + MARNA DNA Mariner 180 302 -284 227 273 0 45 chr9 134569367 134569455 -7701989 - MIR SINE MIR -111 151 68 356 208 0 6 chr9 134571354 134571446 -7699998 - MIR SINE MIR -62 146 59 218 244 148 52 chr9 134571917 134572032 -7699412 + L2 LINE L2 3146 3271 -1 290 265 51 20 chr9 134572924 134573022 -7698422 + MIR SINE MIR 43 143 -119 376 281 167 23 chr9 134573752 134573973 -7697471 - L1MEd LINE L1 -5593 526 274 1704 241 86 32 chr9 134574195 134574297 -7697147 - L1ME2 LINE L1 0 6164 6069 1697 154 34 20 chr9 134574297 134574595 -7696849 + AluJo SINE Alu 1 302 -10 2062 101 10 20 chr9 134574596 134574894 -7696550 + AluSg SINE Alu 1 295 -15 1704 241 86 32 chr9 134574894 134575408 -7696036 - L1ME2 LINE L1 -94 6070 5513 251 127 0 18 chr9 134575482 134575537 -7695907 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 226 56 28 0 chr9 134576444 134576480 -7694964 - L2 LINE L2 -5 3308 3272 1338 298 85 45 chr9 134576574 134576822 -7694622 - L2 LINE L2 -274 2998 2761 1984 119 0 0 chr9 134576822 134577099 -7694345 + AluSx SINE Alu 24 300 -12 1338 298 85 45 chr9 134577099 134577604 -7693840 - L2 LINE L2 -511 2761 2222 253 160 20 140 chr9 134578148 134578248 -7693196 + MLT1H LTR MaLR 462 549 0 345 215 0 0 chr9 134578478 134578557 -7692887 - L1ME4a LINE L1 -79 6042 5964 1746 114 56 36 chr9 134578570 134578876 -7692568 - AluJo SINE Alu 0 312 1 647 240 79 35 chr9 134579165 134579419 -7692025 + LTR16C LTR ERVL 189 453 -38 1649 147 4 8 chr9 134579679 134579931 -7691513 + AluJo SINE Alu 1 251 -61 195 42 0 0 chr9 134579931 134579955 -7691489 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1581 147 100 18 chr9 134579967 134580246 -7691198 + AluJo SINE Alu 1 302 -10 320 336 146 0 chr9 134580310 134580447 -7690997 - MIR SINE MIR -1 261 105 411 335 43 0 chr9 134580525 134580686 -7690758 - L1ME LINE L1 -359 5762 5595 180 97 0 0 chr9 134580932 134580963 -7690481 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1014 201 201 3 chr9 134581271 134581559 -7689885 - MLT1F1 LTR MaLR 0 567 223 193 195 49 0 chr9 134582736 134582777 -7688667 + MIR SINE MIR 111 153 -109 400 335 137 10 chr9 134583801 134584108 -7687336 + L2 LINE L2 2924 3269 -3 615 262 24 0 chr9 134584917 134585081 -7686363 - MIR SINE MIR -80 182 15 216 288 0 25 chr9 134585618 134585634 -7685810 + A-rich Low_complexity Low_complexity 2 17 -62 2406 81 0 3 chr9 134585634 134585943 -7685501 + AluSg SINE Alu 3 310 0 216 288 0 25 chr9 134585943 134586006 -7685438 + A-rich Low_complexity Low_complexity 17 79 0 * 309 313 108 23 chr9 134585944 134586120 -7685324 + L1MDa LINE L1 2393 2583 -3957 286 348 95 13 chr9 134586571 134586729 -7684715 + MIR SINE MIR 44 214 -48 634 215 38 13 chr9 134587445 134587603 -7683841 + L1MB7 LINE L1 6006 6167 -17 5193 143 33 31 chr9 134587947 134589074 -7682370 + pTR5 LTR ERV1 743 2030 -408 268 170 0 0 chr9 134589077 134589130 -7682314 + LTR30 LTR ERV1 552 604 -118 1355 134 5 5 chr9 134589140 134589364 -7682080 + pTR5 LTR ERV1 171 394 -2044 1520 130 168 0 chr9 134590156 134590418 -7681026 + AluJo SINE Alu 1 306 -6 2193 92 7 0 chr9 134590426 134590718 -7680726 + AluSx SINE Alu 1 294 -18 620 167 35 11 chr9 134592328 134592502 -7678942 + CT-rich Low_complexity Low_complexity 3 180 0 202 173 77 0 chr9 134592525 134592577 -7678867 + (TCTCTG)n Simple_repeat Simple_repeat 1 56 0 192 97 0 0 chr9 134592633 134592664 -7678780 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 1671 157 39 42 chr9 134592740 134593052 -7678392 + AluJb SINE Alu 1 311 -1 2136 105 0 14 chr9 134593423 134593718 -7677726 - AluSq SINE Alu -22 291 1 1937 126 7 7 chr9 134593720 134594014 -7677430 - AluSx SINE Alu -18 294 1 1750 181 74 28 chr9 134594018 134594244 -7677200 - L1MB5 LINE L1 -36 6138 5924 1696 87 0 55 chr9 134594244 134594497 -7676947 - AluSq SINE Alu -8 305 67 * 2236 81 17 0 chr9 134594495 134594792 -7676652 - AluY SINE Alu -9 302 1 1750 181 74 28 chr9 134594792 134594997 -7676447 - L1MB5 LINE L1 -545 5629 5688 12374 114 25 59 chr9 134594997 134595115 -7676329 - Tigger1 DNA MER2_type 0 2418 2297 2231 98 7 0 chr9 134595115 134595411 -7676033 + AluSg SINE Alu 1 298 -12 12374 114 25 59 chr9 134595411 134596039 -7675405 - Tigger1 DNA MER2_type -121 2297 1649 2249 99 3 0 chr9 134596039 134596341 -7675103 - AluSp SINE Alu -8 305 3 12374 114 25 59 chr9 134596341 134596387 -7675057 - Tigger1 DNA MER2_type -769 1649 1603 1960 139 7 7 chr9 134596387 134596697 -7674747 - AluSx SINE Alu -2 310 1 12374 114 25 59 chr9 134596697 134597184 -7674260 - Tigger1 DNA MER2_type -815 1603 1101 2243 73 3 22 chr9 134597184 134597501 -7673943 - AluY SINE Alu 0 311 1 12374 114 25 59 chr9 134597501 134598241 -7673203 - Tigger1 DNA MER2_type -1317 1101 484 2343 81 3 0 chr9 134598241 134598539 -7672905 - AluSp SINE Alu -14 299 1 12374 114 25 59 chr9 134598539 134598838 -7672606 - Tigger1 DNA MER2_type -1934 484 176 1061 244 0 41 chr9 134598849 134599115 -7672329 + AluJo SINE Alu 19 273 -39 215 30 0 30 chr9 134599123 134599156 -7672288 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 844 121 0 14 chr9 134599161 134599302 -7672142 - Tigger1 DNA MER2_type -2232 186 48 386 208 10 10 chr9 134599304 134599400 -7672044 - L1MB5 LINE L1 -482 5702 5607 2091 104 0 4 chr9 134599409 134599689 -7671755 - AluSx SINE Alu -33 279 1 1696 138 102 56 chr9 134599689 134600102 -7671342 + MER31A LTR ERV1 54 485 0 269 164 0 0 chr9 134600104 134600159 -7671285 + MER58 DNA MER1_type 64 118 -97 314 354 194 19 chr9 134601562 134602036 -7669408 + L2 LINE L2 2233 2789 -525 188 328 0 0 chr9 134602693 134602754 -7668690 - MIR3 SINE MIR -49 159 99 204 125 0 0 chr9 134604429 134604461 -7666983 + (ATGGTG)n Simple_repeat Simple_repeat 2 33 0 852 178 0 0 chr9 134604471 134604651 -7666793 + (TGG)n Simple_repeat Simple_repeat 1 180 0 2258 94 0 0 chr9 134605260 134605559 -7665885 - AluY SINE Alu -12 299 1 228 236 0 0 chr9 134605606 134605661 -7665783 - MLT1I LTR MaLR -283 126 72 2390 65 3 3 chr9 134605920 134606228 -7665216 + AluY SINE Alu 1 308 -3 2032 144 0 3 chr9 134606272 134606585 -7664859 - AluSx SINE Alu 0 312 1 243 224 80 15 chr9 134606974 134607072 -7664372 + MIR SINE MIR 1 103 -105 618 280 44 8 chr9 134607174 134607424 -7664020 + LTR16A1 LTR ERVL 188 446 -11 264 260 39 0 chr9 134607433 134607510 -7663934 + MIR SINE MIR 95 174 -88 201 138 0 0 chr9 134608202 134608231 -7663213 + (GAAAA)n Simple_repeat Simple_repeat 4 32 0 508 311 77 25 chr9 134609230 134609417 -7662027 + MIR SINE MIR 3 206 -56 2269 99 0 3 chr9 134609417 134609721 -7661723 + AluSq SINE Alu 1 303 -10 508 311 77 25 chr9 134609721 134609768 -7661676 + MIR SINE MIR 206 249 -13 2244 100 0 0 chr9 134610733 134611032 -7660412 + AluSx SINE Alu 1 299 -13 224 352 259 13 chr9 134611912 134612144 -7659300 - MIR SINE MIR 0 262 7 * 366 292 53 0 chr9 134612130 134612243 -7659201 - MIR SINE MIR -79 183 65 1870 165 0 10 chr9 134612301 134612598 -7658846 - AluJb SINE Alu -18 294 1 351 0 0 0 chr9 134612963 134613002 -7658442 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 276 116 0 0 chr9 134613002 134613045 -7658399 - AluJo SINE Alu -19 283 241 970 142 79 32 chr9 134613046 134613236 -7658208 - AluJo SINE Alu -113 199 1 579 191 26 0 chr9 134614544 134614659 -7656785 + L1MB5 LINE L1 6057 6174 0 458 283 108 33 chr9 134614707 134614919 -7656525 - L2 LINE L2 -2 3311 3084 2362 258 38 7 chr9 134615138 134615851 -7655593 + L1ME3 LINE L1 5415 6149 -13 208 362 92 7 chr9 134616806 134616947 -7654497 + MIR SINE MIR 32 184 -78 341 191 24 8 chr9 134617577 134617703 -7653741 + (CA)n Simple_repeat Simple_repeat 1 128 0 397 328 37 12 chr9 134618077 134618269 -7653175 + MIR SINE MIR 35 230 -32 451 343 86 44 chr9 134618866 134619251 -7652193 - L2 LINE L2 -1 3271 2871 501 233 142 49 chr9 134619613 134619979 -7651465 - L2 LINE L2 -108 3205 2783 254 232 40 40 chr9 134620066 134620165 -7651279 + (TTCA)n Simple_repeat Simple_repeat 2 100 0 474 274 30 0 chr9 134620610 134620745 -7650699 - MIR3 SINE MIR -35 173 35 661 273 129 29 chr9 134621176 134621557 -7649887 + L2 LINE L2 2853 3271 -1 267 331 134 33 chr9 134621887 134622162 -7649282 + L2 LINE L2 2991 3293 -20 255 61 0 0 chr9 134622168 134622201 -7649243 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 480 281 23 29 chr9 134622204 134622375 -7649069 + MIR SINE MIR 8 177 -85 245 350 7 36 chr9 134622682 134622819 -7648625 - MIR3 SINE MIR -13 195 63 427 139 3 80 chr9 134623503 134623885 -7647559 + (CA)n Simple_repeat Simple_repeat 1 352 0 223 326 9 26 chr9 134624930 134625047 -7646397 + MIR3 SINE MIR 63 178 -30 203 239 80 11 chr9 134625235 134625323 -7646121 + MIR SINE MIR 43 136 -72 288 296 177 60 chr9 134626007 134626341 -7645103 + L2 LINE L2 2804 3176 -96 300 354 62 7 chr9 134626475 134626619 -7644825 - HAL1 LINE L1 -1215 1292 1141 2080 158 0 0 chr9 134626639 134626950 -7644494 - AluJb SINE Alu -1 311 1 224 343 0 0 chr9 134627029 134627096 -7644348 - MIR SINE MIR -1 261 195 2052 91 3 18 chr9 134627496 134627805 -7643639 - AluSp SINE Alu 0 305 1 467 382 39 10 chr9 134628363 134628847 -7642597 - HERV16 LTR ERVL -1914 3740 3243 537 353 14 0 chr9 134628892 134629099 -7642345 - HERV16 LTR ERVL -2562 3202 2993 1557 204 43 17 chr9 134629135 134629492 -7641952 + MLT2D LTR ERVL 1 475 -45 2176 118 0 6 chr9 134629492 134629805 -7641639 - AluSx SINE Alu -1 311 1 388 205 36 12 chr9 134629848 134629931 -7641513 - L1MC4 LINE L1 -1348 6694 6610 3492 144 57 26 chr9 134629934 134630192 -7641252 - MER7C DNA MER2_type -2427 601 352 1891 136 14 34 chr9 134630192 134630308 -7641136 + AluSx SINE Alu 1 118 -194 2397 53 0 20 chr9 134630308 134630607 -7640837 + AluY SINE Alu 1 293 -18 1891 136 14 34 chr9 134630607 134630785 -7640659 + AluSx SINE Alu 118 289 -23 3492 144 57 26 chr9 134630785 134631108 -7640336 - MER7C DNA MER2_type -2676 352 2 789 341 40 27 chr9 134631375 134631607 -7639837 - HERV16 LTR ERVL -4349 647 419 1765 146 7 4 chr9 134631607 134631915 -7639529 - AluSx SINE Alu 0 313 5 789 341 40 27 chr9 134631915 134632229 -7639215 - HERV16 LTR ERVL -4577 419 93 4849 54 3 3 chr9 134632245 134632836 -7638608 + LTR10C LTR ERV1 1 591 0 413 163 0 0 chr9 134632850 134632930 -7638514 + ORSL DNA AcHobo 11 90 -185 613 134 20 60 chr9 134632930 134633005 -7638439 + L1MB3 LINE L1 5986 6054 -129 2131 108 14 0 chr9 134633005 134633300 -7638144 + AluSx SINE Alu 1 299 -13 613 134 20 60 chr9 134633300 134633373 -7638071 + L1MB3 LINE L1 6054 6128 -55 1673 190 0 7 chr9 134633615 134633915 -7637529 - AluSx SINE Alu -13 299 2 639 226 74 11 chr9 134633925 134634115 -7637329 + ORSL DNA AcHobo 74 275 0 592 363 129 32 chr9 134634224 134634443 -7637001 - L1M4 LINE L1 -1564 4582 4386 217 0 29 29 chr9 134634443 134634477 -7636967 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1960 129 7 0 chr9 134634482 134634761 -7636683 - AluSx SINE Alu -31 281 1 592 363 129 32 chr9 134634761 134634976 -7636468 - L1M4 LINE L1 -1763 4383 4099 2252 113 6 0 chr9 134635135 134635446 -7635998 - AluSq SINE Alu 0 313 1 2057 123 3 3 chr9 134635494 134635796 -7635648 - AluJb SINE Alu -10 302 1 200 154 77 0 chr9 134635893 134635932 -7635512 - L2 LINE L2 -260 3053 3012 267 314 25 34 chr9 134636150 134636268 -7635176 - MIR SINE MIR -38 224 108 21 0 0 0 chr9 134636376 134636397 -7635047 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 134636554 134636575 -7634869 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 134636706 134636727 -7634717 + GC_rich Low_complexity Low_complexity 1 21 0 1842 147 3 28 chr9 134637032 134637169 -7634275 + AluJo SINE Alu 1 140 -172 2379 68 7 0 chr9 134637169 134637476 -7633968 + AluSq SINE Alu 1 309 -4 1842 147 3 28 chr9 134637476 134637658 -7633786 + AluJo SINE Alu 140 312 0 870 256 93 7 chr9 134638286 134638587 -7632857 + MER46C DNA MER2_type 12 338 0 335 178 55 9 chr9 134638590 134638677 -7632767 - MIR SINE MIR -63 145 59 252 342 111 0 chr9 134639200 134639317 -7632127 - MIR SINE MIR -14 248 119 375 23 0 0 chr9 134639346 134639390 -7632054 + (CA)n Simple_repeat Simple_repeat 2 45 0 272 270 194 0 chr9 134639543 134639701 -7631743 + MIR3 SINE MIR 3 192 -70 270 284 14 14 chr9 134640430 134640504 -7630940 - MIR SINE MIR -122 140 67 188 333 208 14 chr9 134640822 134641029 -7630415 - L2 LINE L2 -65 3207 2961 193 389 22 14 chr9 134641503 134641642 -7629802 + L2 LINE L2 2867 3006 -266 274 274 80 95 chr9 134641703 134641966 -7629478 + L2 LINE L2 3014 3272 0 1723 129 28 39 chr9 134642001 134642287 -7629157 + AluJo SINE Alu 14 296 -16 370 288 103 70 chr9 134642292 134642535 -7628909 - MIR SINE MIR -18 244 10 180 158 0 0 chr9 134642627 134642665 -7628779 + (CCCTG)n Simple_repeat Simple_repeat 3 40 0 2135 110 0 7 chr9 134642945 134643253 -7628191 - AluSx SINE Alu -6 306 1 2464 149 77 18 chr9 134643253 134643709 -7627735 + L1MB3 LINE L1 5700 6182 -1 354 338 131 9 chr9 134643740 134644068 -7627376 + L1ME4a LINE L1 5567 5934 -187 2073 90 23 3 chr9 134644739 134645039 -7626405 + AluSx SINE Alu 1 306 -6 2258 112 0 0 chr9 134645039 134645351 -7626093 + AluSx SINE Alu 1 312 0 2118 100 10 3 chr9 134645429 134645729 -7625715 - AluSx SINE Alu -10 302 1 185 309 31 41 chr9 134645908 134646005 -7625439 + L2 LINE L2 2913 3008 -264 2036 118 4 0 chr9 134646277 134646580 -7624864 + AluSx SINE Alu 3 306 0 280 333 0 0 chr9 134646634 134646706 -7624738 + L2 LINE L2 3201 3272 0 282 270 32 2 chr9 134646844 134646992 -7624452 - MIR SINE MIR -1 261 84 459 104 0 13 chr9 134648172 134648249 -7623195 - L1M3 LINE L1 -517 5666 5591 954 143 25 5 chr9 134648571 134648758 -7622686 - L1ME LINE L1 -533 5631 5447 2774 147 96 7 chr9 134648786 134649510 -7621934 - MER21A LTR ERV1 -6 925 27 261 0 0 0 chr9 134649510 134649539 -7621905 + (CA)n Simple_repeat Simple_repeat 2 30 0 889 120 0 30 chr9 134649545 134649678 -7621766 - FLAM_C SINE Alu -14 129 1 3680 186 24 26 chr9 134649726 134649847 -7621597 - L1MB8 LINE L1 -5 6173 6053 225 0 0 0 chr9 134649847 134649872 -7621572 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1733 113 17 73 chr9 134649872 134650172 -7621272 - AluJo SINE Alu -29 283 1 3680 186 24 26 chr9 134650172 134650900 -7620544 - L1MB8 LINE L1 -123 6055 5325 1427 163 21 4 chr9 134650901 134651140 -7620304 - AluJo SINE Alu -11 301 59 1214 157 48 26 chr9 134651146 134651445 -7619999 - L1MB8 LINE L1 -813 5333 5025 2261 88 7 0 chr9 134651445 134651740 -7619704 - AluSx SINE Alu -15 297 1 1214 157 48 26 chr9 134651740 134651753 -7619691 - L1MB8 LINE L1 -1121 5025 5014 330 298 63 84 chr9 134651993 134652325 -7619119 - L2 LINE L2 0 3272 2948 298 289 92 28 chr9 134652522 134652664 -7618780 - HAL1 LINE L1 -182 2325 2175 191 317 183 21 chr9 134652964 134653150 -7618294 - L2 LINE L2 -1416 1898 1683 375 342 125 0 chr9 134653211 134653363 -7618081 + L3 LINE CR1 1365 1535 -42 1994 120 10 16 chr9 134653997 134654306 -7617138 - AluSx SINE Alu -5 307 1 331 389 29 0 chr9 134654478 134654617 -7616827 - MIR3 SINE MIR -46 162 20 468 169 80 164 chr9 134654777 134654990 -7616454 + MER3 DNA MER1_type 10 204 -5 1571 152 52 37 chr9 134655289 134655617 -7615827 + MER1B DNA MER1_type 5 337 0 927 231 22 34 chr9 134655831 134656099 -7615345 - MER77 LTR ERV1 -1 604 340 814 153 0 21 chr9 134656113 134656257 -7615187 - FLAM_C SINE Alu -2 141 1 945 215 93 20 chr9 134656257 134656504 -7614940 - MER77 LTR ERV1 -287 318 54 2136 112 10 0 chr9 134657238 134657534 -7613910 - AluSx SINE Alu -13 299 1 686 253 54 0 chr9 134657777 134657943 -7613501 + MIR SINE MIR 8 182 -80 365 195 49 0 chr9 134658117 134658199 -7613245 + MER5A DNA MER1_type 24 109 -80 364 275 49 28 chr9 134658639 134658781 -7612663 - L2 LINE L2 -2 3270 3126 218 370 12 0 chr9 134659041 134659122 -7612322 - MIR SINE MIR -79 183 102 260 208 0 13 chr9 134659724 134659801 -7611643 + CT-rich Low_complexity Low_complexity 3 78 0 903 134 0 0 chr9 134659803 134659982 -7611462 + (TC)n Simple_repeat Simple_repeat 2 180 0 2116 87 4 0 chr9 134659982 134660258 -7611186 - AluSp SINE Alu -32 281 5 191 328 164 10 chr9 134660853 134661048 -7610396 - L2 LINE L2 -534 2780 2556 195 256 299 8 chr9 134661849 134661966 -7609478 + MIR SINE MIR 36 186 -22 2563 99 57 52 chr9 134662193 134662234 -7609210 - MSTA LTR MaLR -1 427 388 2164 99 3 0 chr9 134662234 134662544 -7608900 - AluSp SINE Alu 0 311 1 2563 99 57 52 chr9 134662544 134662925 -7608519 - MSTA LTR MaLR -40 388 2 257 221 130 26 chr9 134663168 134663245 -7608199 + MIR SINE MIR 71 155 -107 185 186 47 0 chr9 134664238 134664281 -7607163 - MER5A DNA MER1_type -133 56 12 1318 171 53 11 chr9 134664807 134665070 -7606374 - AluJo SINE Alu -21 291 18 296 298 21 78 chr9 134665368 134665610 -7605834 + L2 LINE L2 2948 3175 -97 365 226 28 0 chr9 134665879 134665985 -7605459 - MER94 DNA DNA -11 123 15 1071 138 0 0 chr9 134667307 134667466 -7603978 - AluSg/x SINE Alu -13 296 138 1904 154 7 3 chr9 134667476 134667768 -7603676 - AluSx SINE Alu -19 293 1 257 295 44 105 chr9 134667934 134668229 -7603215 + L2 LINE L2 2910 3186 -86 308 234 19 19 chr9 134668234 134668375 -7603069 + (TGGA)n Simple_repeat Simple_repeat 1 140 -370 2020 150 0 0 chr9 134668375 134668668 -7602776 + AluSx SINE Alu 1 293 -19 308 234 19 19 chr9 134668668 134668744 -7602700 + (TGGA)n Simple_repeat Simple_repeat 140 510 0 423 289 79 0 chr9 134670289 134670441 -7601003 - MER117 DNA MER1_type -33 164 1 200 328 0 0 chr9 134670449 134670507 -7600937 - MIR SINE MIR -64 144 87 2349 248 124 121 chr9 134670639 134671144 -7600300 + L1MD3 LINE L1 6778 7280 -715 463 219 9 0 chr9 134671144 134671249 -7600195 + MLT1F1 LTR MaLR 1 106 -461 2066 72 15 0 chr9 134671251 134671513 -7599931 - AluSq SINE Alu -14 299 34 2349 248 124 121 chr9 134671513 134671931 -7599513 + L1MD3 LINE L1 7280 7814 -181 2295 97 3 0 chr9 134671931 134672241 -7599203 + AluSx SINE Alu 2 312 0 2349 248 124 121 chr9 134672241 134672406 -7599038 + L1MD3 LINE L1 7814 7977 -18 354 275 305 0 chr9 134672997 134673128 -7598316 - MIR SINE MIR -12 250 80 1777 142 0 50 chr9 134673169 134673492 -7597952 - AluJb SINE Alu 0 312 6 813 134 47 8 chr9 134673519 134673646 -7597798 - FLAM_C SINE Alu 0 133 2 470 95 0 84 chr9 134674117 134674148 -7597296 - Charlie1 DNA MER1_type 0 2761 2729 2137 117 0 7 chr9 134674148 134674455 -7596989 - AluSx SINE Alu -7 305 1 470 95 0 84 chr9 134674455 134674518 -7596926 - Charlie1 DNA MER1_type -32 2729 2675 1992 139 0 0 chr9 134674660 134674948 -7596496 - AluSx SINE Alu -24 288 1 1536 228 85 22 chr9 134675763 134676223 -7595221 - MLT1D LTR MaLR -9 496 8 2101 132 0 13 chr9 134677073 134677384 -7594060 + AluSx SINE Alu 1 307 -5 2140 242 146 40 chr9 134677716 134677954 -7593490 - MER45B DNA AcHobo -541 1040 829 2193 100 0 3 chr9 134677954 134678254 -7593190 - AluSg1 SINE Alu -10 299 1 2140 242 146 40 chr9 134678254 134678900 -7592544 - MER45B DNA AcHobo -752 829 62 2242 110 0 0 chr9 134680146 134680455 -7590989 + AluSg SINE Alu 1 309 -1 783 169 54 0 chr9 134680456 134680586 -7590858 + AluJb SINE Alu 136 272 -40 564 343 29 32 chr9 134680692 134681039 -7590405 - L1MC4a LINE L1 -1906 5902 5557 422 230 126 15 chr9 134681051 134681186 -7590258 - L1ME LINE L1 -5915 155 6 2480 64 0 3 chr9 134681222 134681534 -7589910 - AluY SINE Alu 0 311 1 1776 164 10 16 chr9 134681725 134682035 -7589409 + AluJo SINE Alu 1 308 -4 290 299 51 0 chr9 134682151 134682288 -7589156 - L1P4 LINE L1 -701 5467 5324 1683 162 18 0 chr9 134682328 134682612 -7588832 + AluJb SINE Alu 7 295 -17 348 248 38 19 chr9 134683413 134683518 -7587926 + MIR SINE MIR 56 162 -100 199 353 150 6 chr9 134683706 134683873 -7587571 - MIR SINE MIR -44 218 28 1439 191 20 23 chr9 134683909 134684212 -7587232 - AluSx SINE Alu 0 312 11 2271 101 16 0 chr9 134684609 134684915 -7586529 + AluSq SINE Alu 1 311 -2 2049 117 7 0 chr9 134684926 134685208 -7586236 + AluSx SINE Alu 14 297 -15 2415 71 3 0 chr9 134685208 134685517 -7585927 + AluY SINE Alu 1 310 -1 2100 113 3 0 chr9 134686359 134686670 -7584774 + AluSx SINE Alu 1 312 0 694 342 40 0 chr9 134686685 134686907 -7584537 - MIR SINE MIR -30 232 2 222 300 14 29 chr9 134687489 134687559 -7583885 - MER5B DNA MER1_type -105 73 5 318 169 14 0 chr9 134687694 134687765 -7583679 - L1MB7 LINE L1 0 6184 6113 1864 151 0 3 chr9 134687765 134688057 -7583387 + AluJb SINE Alu 1 291 -21 2239 84 3 3 chr9 134688078 134688374 -7583070 + AluY SINE Alu 1 296 -15 1369 208 12 39 chr9 134688411 134688584 -7582860 - L1MB4 LINE L1 -1 6179 6018 2241 111 0 0 chr9 134688584 134688890 -7582554 + AluSx SINE Alu 1 306 -6 1369 208 12 39 chr9 134688890 134689053 -7582391 - L1MB4 LINE L1 -162 6018 5852 2109 129 3 0 chr9 134689910 134690204 -7581240 - AluSx SINE Alu -17 295 1 21 0 0 0 chr9 134690286 134690307 -7581137 + AT_rich Low_complexity Low_complexity 1 21 0 182 65 65 0 chr9 134690340 134690371 -7581073 + A-rich Low_complexity Low_complexity 2 34 0 2442 50 0 3 chr9 134690378 134690681 -7580763 + AluY SINE Alu 1 302 -9 2088 127 0 16 chr9 134690750 134691066 -7580378 + AluSx SINE Alu 1 311 -1 360 283 17 0 chr9 134691512 134691632 -7579812 + (ATG)n Simple_repeat Simple_repeat 3 124 0 2195 104 0 25 chr9 134691910 134692227 -7579217 + AluSx SINE Alu 1 309 -3 361 281 14 29 chr9 134692419 134692558 -7578886 + MER103 DNA DNA 23 159 -7 395 294 162 20 chr9 134692781 134692985 -7578459 + L3 LINE CR1 1343 1575 -2 204 252 183 35 chr9 134693420 134693535 -7577909 + MIR3 SINE MIR 49 180 -28 2061 113 0 7 chr9 134694290 134694599 -7576845 + AluSx SINE Alu 1 307 0 203 216 34 0 chr9 134694603 134694691 -7576753 + (ATGGTG)n Simple_repeat Simple_repeat 1 91 0 742 299 35 0 chr9 134694707 134694938 -7576506 - MIR SINE MIR -1 261 23 209 354 133 0 chr9 134695406 134695519 -7575925 + MIR3 SINE MIR 81 208 0 394 185 25 0 chr9 134696671 134696752 -7574692 + MER103 DNA DNA 48 130 -36 358 247 31 3 chr9 134697402 134697508 -7573936 + MIR SINE MIR 46 151 -76 180 385 66 6 chr9 134697508 134697674 -7573770 - MER5B DNA MER1_type -2 176 1 646 226 90 84 chr9 134698452 134698538 -7572906 - MER46C DNA MER2_type 0 338 254 2200 88 0 10 chr9 134698538 134698833 -7572611 + AluSg SINE Alu 1 292 -18 646 226 90 84 chr9 134698833 134699069 -7572375 - MER46C DNA MER2_type -84 254 14 187 274 177 0 chr9 134700032 134700094 -7571350 + L2 LINE L2 3222 3294 -19 778 182 8 0 chr9 134700118 134700239 -7571205 + FLAM_C SINE Alu 1 122 -21 243 182 64 91 chr9 134700602 134700712 -7570732 + MIR SINE MIR 41 147 -61 270 277 93 3 chr9 134701108 134701232 -7570212 + MIR SINE MIR 52 184 -62 312 93 0 0 chr9 134701853 134701896 -7569548 + Alu SINE Alu 241 283 -19 1088 184 43 12 chr9 134701897 134702152 -7569292 - L1MB7 LINE L1 -62 6122 5860 2309 69 3 7 chr9 134702161 134702465 -7568979 - AluY SINE Alu 0 311 9 448 232 49 6 chr9 134702626 134702754 -7568690 - MIR SINE MIR -63 145 21 302 209 0 146 chr9 134702758 134702822 -7568622 + MER94 DNA DNA 1 73 -61 1752 168 3 16 chr9 134702822 134703126 -7568318 + AluJo SINE Alu 1 300 -12 2087 101 38 0 chr9 134703132 134703420 -7568024 + AluSx SINE Alu 1 299 -13 302 209 0 146 chr9 134703420 134703458 -7567986 + MER94 DNA DNA 78 94 -40 196 333 26 35 chr9 134704609 134704723 -7566721 - MIR3 SINE MIR -95 113 1 2353 99 0 0 chr9 134705235 134705547 -7565897 + AluSx SINE Alu 1 312 0 326 233 35 12 chr9 134705756 134705842 -7565602 + MIR SINE MIR 40 127 -81 2160 73 25 4 chr9 134706050 134706354 -7565090 + AluY SINE Alu 1 310 0 358 317 77 24 chr9 134706366 134706612 -7564832 + MER46C DNA MER2_type 80 338 0 320 317 23 7 chr9 134706619 134706764 -7564680 - MIR SINE MIR -63 145 3 2254 99 0 7 chr9 134707253 134707555 -7563889 + AluSc SINE Alu 1 300 -9 1879 167 7 10 chr9 134707812 134708117 -7563327 - AluSx SINE Alu -8 304 1 2198 99 23 0 chr9 134708120 134708424 -7563020 - AluSx SINE Alu -1 311 1 1322 255 50 0 chr9 134708758 134709142 -7562302 - L1MB5 LINE L1 -14 6160 5758 1103 79 0 0 chr9 134709343 134709482 -7561962 - AluSq/x SINE Alu -173 139 1 1682 197 0 7 chr9 134709599 134709761 -7561683 - AluJb SINE Alu -15 297 136 1751 101 108 4 chr9 134709761 134710029 -7561415 - AluSq SINE Alu -17 296 1 1682 197 0 7 chr9 134710029 134710165 -7561279 - AluJb SINE Alu -176 136 1 1291 221 64 18 chr9 134710165 134710554 -7560890 - L1MB5 LINE L1 -1010 5136 4730 34 0 0 0 chr9 134710586 134710620 -7560824 + AT_rich Low_complexity Low_complexity 1 34 0 2027 147 0 0 chr9 134710620 134710927 -7560517 - AluSx SINE Alu -5 307 1 971 204 48 48 chr9 134710928 134711242 -7560202 - L1MB5 LINE L1 -1394 4752 4439 2296 66 3 7 chr9 134711244 134711545 -7559899 - AluY SINE Alu -11 300 1 439 226 28 0 chr9 134711545 134711665 -7559779 + L1MB2 LINE L1 5937 6066 -105 2174 97 3 0 chr9 134711741 134712031 -7559413 - AluSq SINE Alu -22 291 1 1839 123 4 7 chr9 134712407 134712684 -7558760 - AluJo SINE Alu -36 276 1 258 328 126 0 chr9 134712722 134712841 -7558603 - MIR SINE MIR -16 246 113 337 374 35 6 chr9 134712852 134713023 -7558421 - MIR SINE MIR -3 259 84 708 239 30 5 chr9 134713474 134713675 -7557769 + MLT1A1 LTR MaLR 157 362 -3 352 119 8 203 chr9 134713676 134713722 -7557722 + L1MB8 LINE L1 6075 6128 -50 1415 136 88 54 chr9 134713722 134713871 -7557573 - AluJb SINE Alu -8 304 162 2156 122 0 0 chr9 134713871 134714175 -7557269 - AluSg1 SINE Alu -5 304 1 1415 136 88 54 chr9 134714175 134714319 -7557125 - AluJb SINE Alu -150 162 1 352 119 8 203 chr9 134714319 134714331 -7557113 + L1MB8 LINE L1 6128 6141 -37 1987 117 31 10 chr9 134714331 134714622 -7556822 - AluSx SINE Alu -15 297 1 352 119 8 203 chr9 134714622 134714680 -7556764 + L1MB8 LINE L1 6141 6169 -9 219 258 44 13 chr9 134714973 134715066 -7556378 - MIR SINE MIR -74 134 38 2241 81 14 0 chr9 134715320 134715616 -7555828 + AluSq SINE Alu 1 300 -13 259 379 24 8 chr9 134715758 134715882 -7555562 + MIR SINE MIR 21 146 -116 2170 107 0 7 chr9 134716162 134716461 -7554983 - AluSg SINE Alu -13 297 1 396 0 0 0 chr9 134717036 134717080 -7554364 + (CA)n Simple_repeat Simple_repeat 2 45 0 566 311 12 6 chr9 134717625 134717786 -7553658 + MIR SINE MIR 46 207 -55 2294 107 3 0 chr9 134717851 134718159 -7553285 - AluSx SINE Alu -3 309 1 221 314 186 10 chr9 134718161 134718263 -7553181 - MIR SINE MIR -115 147 28 1993 124 7 13 chr9 134722704 134722839 -7548605 + AluSx SINE Alu 1 135 -177 1642 92 80 16 chr9 134722839 134723088 -7548356 + AluSg SINE Alu 35 299 -11 1993 124 7 13 chr9 134723088 134723251 -7548193 + AluSx SINE Alu 135 297 -15 400 109 0 0 chr9 134723261 134723316 -7548128 + Alu SINE Alu 3 57 -254 1959 161 14 3 chr9 134723350 134723717 -7547727 + L1MB2 LINE L1 5690 6060 -111 2100 106 3 0 chr9 134723717 134724001 -7547443 + AluSq SINE Alu 1 285 -28 323 322 0 11 chr9 134724320 134724410 -7547034 - MIR SINE MIR -91 171 83 2141 115 3 10 chr9 134724499 134724811 -7546633 - AluSx SINE Alu -2 310 1 1866 139 16 50 chr9 134724830 134725039 -7546405 - AluJo SINE Alu 0 312 116 2107 124 3 7 chr9 134725039 134725345 -7546099 + AluSx SINE Alu 1 305 -7 1866 139 16 50 chr9 134725345 134725458 -7545986 - AluJo SINE Alu -196 116 1 243 271 47 0 chr9 134725640 134725725 -7545719 + MIR SINE MIR 90 178 -84 * 272 203 43 14 chr9 134725721 134725790 -7545654 + L2 LINE L2 3202 3272 0 479 273 33 8 chr9 134726653 134726774 -7544670 + MIR SINE MIR 32 155 -107 1383 127 55 8 chr9 134726995 134727232 -7544212 - L1MB3 LINE L1 0 6183 5936 2064 119 7 10 chr9 134727233 134727526 -7543918 + AluSx SINE Alu 1 292 -20 1759 62 31 0 chr9 134727537 134727763 -7543681 + L1PA5 LINE L1 5921 6153 -1 528 119 1 147 chr9 134727763 134727821 -7543623 - L1MB3 LINE L1 -231 5947 5922 1849 137 3 37 chr9 134727821 134728121 -7543323 - AluJo SINE Alu -22 290 1 528 119 1 147 chr9 134728121 134728211 -7543233 - L1MB3 LINE L1 -256 5922 5820 336 320 16 16 chr9 134728258 134728380 -7543064 - MIR SINE MIR -36 226 105 785 197 0 0 chr9 134728386 134728528 -7542916 - FLAM_C SINE Alu -1 142 1 277 269 39 39 chr9 134728531 134728635 -7542809 - MIR SINE MIR -147 115 12 181 315 79 0 chr9 134728703 134728792 -7542652 - L2 LINE L2 -18 3254 3159 1061 96 0 0 chr9 134729040 134729176 -7542268 + AluSq/x SINE Alu 1 136 -177 2069 100 28 3 chr9 134729176 134729465 -7541979 + AluSx SINE Alu 1 296 -16 236 150 0 0 chr9 134729488 134729528 -7541916 + AluSq/x SINE Alu 125 164 -138 226 351 128 0 chr9 134729600 134729694 -7541750 - MIR3 SINE MIR -15 193 88 2080 144 0 0 chr9 134732232 134732544 -7538900 - AluSx SINE Alu 0 312 1 297 273 0 0 chr9 134733563 134733629 -7537815 - MIR SINE MIR -62 146 81 2209 104 3 3 chr9 134733818 134734125 -7537319 + AluSx SINE Alu 1 307 -5 294 276 48 0 chr9 134734185 134734290 -7537154 - MER94 DNA DNA -23 111 2 230 263 212 0 chr9 134734386 134734504 -7536940 + MIR SINE MIR 118 260 -2 188 303 11 79 chr9 134734608 134734697 -7536747 - MIR SINE MIR -72 190 108 285 143 26 13 chr9 134734819 134734896 -7536548 + G-rich Low_complexity Low_complexity 2 79 0 798 189 0 14 chr9 134735683 134735826 -7535618 - AluSg/x SINE Alu -45 265 125 183 236 18 0 chr9 134737216 134737271 -7534173 - MIR SINE MIR -89 119 64 214 231 333 0 chr9 134737474 134737582 -7533862 + MIR SINE MIR 84 227 -35 2413 81 14 0 chr9 134738160 134738457 -7532987 - AluSx SINE Alu -11 301 1 888 172 7 0 chr9 134738491 134738636 -7532808 - AluJb SINE Alu -30 282 137 337 320 105 0 chr9 134738776 134738929 -7532515 - MIR SINE MIR -14 248 80 2424 96 0 0 chr9 134739324 134739626 -7531818 - AluSg SINE Alu -8 302 1 546 200 32 58 chr9 134739744 134739786 -7531658 - MIR SINE MIR -77 185 143 1928 166 7 0 chr9 134739786 134740075 -7531369 - AluJb SINE Alu -21 291 1 546 200 32 58 chr9 134740075 134740187 -7531257 - MIR SINE MIR -119 143 35 2354 107 13 0 chr9 134740335 134740643 -7530801 - AluSx SINE Alu 0 312 1 194 224 171 40 chr9 134741884 134741960 -7529484 - MIR SINE MIR 0 262 177 620 180 0 16 chr9 134741973 134742101 -7529343 + AluJb SINE Alu 182 307 -5 397 209 5 171 chr9 134742102 134742289 -7529155 - MIR SINE MIR -79 183 28 256 317 30 20 chr9 134742333 134742434 -7529010 + MIR3 SINE MIR 85 186 -22 333 219 0 0 chr9 134742950 134743014 -7528430 + MIR SINE MIR 85 148 -114 1014 167 0 0 chr9 134743182 134743344 -7528100 + FRAM SINE Alu 1 162 -4 203 103 0 0 chr9 134743362 134743391 -7528053 - MIR SINE MIR -201 61 33 1841 114 83 8 chr9 134743783 134744075 -7527369 - AluSx SINE Alu 0 312 1 1623 148 55 0 chr9 134744252 134744508 -7526936 - AluJo SINE Alu -1 311 42 241 195 0 0 chr9 134744508 134744549 -7526895 - L2 LINE L2 -10 3303 3263 195 333 58 0 chr9 134744660 134744729 -7526715 + MIR SINE MIR 59 131 -131 * 217 279 59 0 chr9 134744725 134744793 -7526651 - L2 LINE L2 -1 3312 3241 1701 139 0 8 chr9 134744931 134745176 -7526268 + AluJo SINE Alu 1 243 -69 2144 124 13 0 chr9 134745244 134745551 -7525893 + AluSx SINE Alu 1 311 -1 289 244 111 0 chr9 134745551 134745641 -7525803 - L2 LINE L2 -276 3037 2938 197 314 23 47 chr9 134746211 134746297 -7525147 - MIR3 SINE MIR -40 168 85 2188 108 21 0 chr9 134746631 134746919 -7524525 - AluSx SINE Alu -7 305 12 246 242 222 10 chr9 134746937 134747036 -7524408 + MIR SINE MIR 81 200 -62 198 300 89 33 chr9 134747386 134747476 -7523968 + L3 LINE CR1 1410 1504 -73 303 28 0 0 chr9 134747619 134747655 -7523789 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2382 105 0 3 chr9 134747707 134748020 -7523424 + AluSx SINE Alu 1 312 0 325 102 0 0 chr9 134748308 134748357 -7523087 + MIR SINE MIR 114 162 -100 2096 133 0 7 chr9 134748358 134748658 -7522786 + AluJb SINE Alu 1 298 -14 230 172 75 86 chr9 134748774 134748867 -7522577 - MIR SINE MIR -69 193 102 2332 113 3 0 chr9 134748924 134749233 -7522211 - AluSx SINE Alu -2 310 1 2369 61 10 45 chr9 134749310 134749622 -7521822 + AluSq SINE Alu 1 301 -12 390 326 8 8 chr9 134751013 134751145 -7520299 - MIR SINE MIR -125 137 6 204 342 69 73 chr9 134751383 134751643 -7519801 - L2 LINE L2 0 3313 3055 2358 112 0 0 chr9 134751646 134751951 -7519493 + AluSx SINE Alu 1 305 -7 357 253 0 12 chr9 134751951 134752034 -7519410 + MIR SINE MIR 9 90 -172 331 157 0 121 chr9 134752037 134752120 -7519324 + AluS SINE Alu 228 300 0 200 225 50 92 chr9 134752556 134752676 -7518768 + MER5B DNA MER1_type 1 115 -63 280 175 0 3 chr9 134753540 134753598 -7517846 - MIR SINE MIR -50 158 102 2568 78 0 0 chr9 134753598 134753906 -7517538 + AluSx SINE Alu 1 308 -4 2411 96 0 0 chr9 134754123 134754424 -7517020 + AluSq SINE Alu 1 301 -12 697 290 110 45 chr9 134754430 134754696 -7516748 - L1ME4a LINE L1 -12 6109 5862 2317 102 0 0 chr9 134754696 134754990 -7516454 - AluSx SINE Alu -13 299 6 697 290 110 45 chr9 134754990 134755251 -7516193 - L1ME4a LINE L1 -259 5862 5548 393 289 14 24 chr9 134755855 134756022 -7515422 - MIR SINE MIR -41 167 4 253 265 41 61 chr9 134756452 134756517 -7514927 + MIR SINE MIR 76 140 -122 2321 127 0 0 chr9 134756517 134756824 -7514620 - AluSx SINE Alu -5 307 1 253 265 41 61 chr9 134756824 134756856 -7514588 + MIR SINE MIR 140 171 -91 228 135 0 0 chr9 134756910 134756947 -7514497 + (ATG)n Simple_repeat Simple_repeat 2 38 0 2271 112 16 3 chr9 134756975 134757278 -7514166 - AluSx SINE Alu -4 308 2 482 355 41 0 chr9 134757364 134757561 -7513883 + MIR SINE MIR 50 254 -8 2325 117 0 0 chr9 134757651 134757960 -7513484 + AluSq SINE Alu 2 310 -3 199 328 0 0 chr9 134758034 134758098 -7513346 - MIR SINE MIR -118 144 81 408 287 69 9 chr9 134758110 134758262 -7513182 - MIR SINE MIR -43 165 3 445 264 43 16 chr9 134758347 134758515 -7512929 + MIR3 SINE MIR 3 178 -63 416 300 0 8 chr9 134759881 134760001 -7511443 - MIR3 SINE MIR -3 205 87 217 318 243 0 chr9 134760370 134760518 -7510926 - L2 LINE L2 -2 3270 3087 215 271 110 34 chr9 134761692 134761810 -7509634 - MIR SINE MIR -68 194 68 2610 47 0 0 chr9 134761863 134762159 -7509285 + AluY SINE Alu 1 296 -15 285 305 0 0 chr9 134762236 134762331 -7509113 + MIR SINE MIR 39 133 -129 335 259 19 10 chr9 134762334 134762439 -7509005 + L1MC4 LINE L1 1998 6983 -1339 2329 111 0 0 chr9 134762440 134762747 -7508697 - AluSx SINE Alu -5 307 1 2593 45 0 6 chr9 134762749 134763062 -7508382 - AluY SINE Alu 0 311 1 1896 135 3 37 chr9 134763062 134763359 -7508085 - AluJo SINE Alu -15 297 11 274 256 364 0 chr9 134764435 134764564 -7506880 - MIR SINE MIR -3 259 84 2120 106 0 7 chr9 134764982 134765275 -7506169 - AluSx SINE Alu -15 297 7 518 175 31 0 chr9 134765422 134765519 -7505925 + U6 snRNA snRNA 4 103 -4 2195 127 3 0 chr9 134765533 134765833 -7505611 + AluSx SINE Alu 1 301 -11 208 288 126 18 chr9 134767053 134767164 -7504280 - MIR3 SINE MIR -1 207 85 626 260 69 20 chr9 134767233 134767437 -7504007 - MIR SINE MIR 0 262 49 1965 136 14 0 chr9 134768047 134768334 -7503110 - AluSx SINE Alu -21 291 1 2494 89 0 3 chr9 134768564 134768877 -7502567 - AluSx SINE Alu 0 312 1 2025 158 0 16 chr9 134770104 134770421 -7501023 - AluJb SINE Alu 0 312 1 2306 114 19 0 chr9 134770539 134770846 -7500598 - AluSq SINE Alu 0 313 1 2109 143 3 10 chr9 134771722 134772036 -7499408 - AluJb SINE Alu 0 312 1 215 299 78 0 chr9 134772258 134772335 -7499109 - L2 LINE L2 -1 3271 3189 1762 192 7 0 chr9 134772380 134772677 -7498767 - AluJo SINE Alu -13 299 1 427 336 55 34 chr9 134772936 134773174 -7498270 - MIR SINE MIR 0 262 20 1184 151 163 85 chr9 134773544 134773802 -7497642 - AluJo SINE Alu -34 278 1 1521 134 13 13 chr9 134774470 134774702 -7496742 - AluSg/x SINE Alu -10 302 71 277 295 102 25 chr9 134775623 134775867 -7495577 - HAL1 LINE L1 0 2507 2245 2147 101 27 3 chr9 134775985 134776283 -7495161 - AluSx SINE Alu -7 305 1 186 103 0 0 chr9 134776536 134776565 -7494879 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 426 196 0 0 chr9 134776595 134776687 -7494757 + C-rich Low_complexity Low_complexity 1 92 0 1878 143 4 0 chr9 134776691 134776950 -7494494 - AluSx SINE Alu -52 260 1 306 125 0 0 chr9 134777663 134777711 -7493733 + (T)n Simple_repeat Simple_repeat 1 48 0 309 242 137 0 chr9 134779454 134779549 -7491895 + L1ME4a LINE L1 5746 5853 -268 418 283 35 41 chr9 134779622 134779767 -7491677 + L1ME4a LINE L1 5956 6099 -22 1764 197 17 0 chr9 134779911 134780206 -7491238 - AluJb SINE Alu -6 306 7 21 36 0 0 chr9 134781384 134781412 -7490032 + AT_rich Low_complexity Low_complexity 1 28 0 1845 162 0 10 chr9 134781452 134781742 -7489702 - AluJb SINE Alu -25 287 1 407 346 142 17 chr9 134781790 134782079 -7489365 - L1ME LINE L1 -439 5682 5358 211 378 31 0 chr9 134783541 134783639 -7487805 + L2 LINE L2 2637 2737 -577 193 293 0 37 chr9 134783731 134783813 -7487631 + L2 LINE L2 3156 3234 -79 370 215 11 11 chr9 134783976 134784069 -7487375 - L1MC/D LINE L1 -2000 5808 5716 2316 98 3 0 chr9 134785081 134785376 -7486068 + AluSx SINE Alu 1 296 -16 1595 160 87 4 chr9 134785446 134785721 -7485723 - AluJo SINE Alu -14 298 1 22 0 0 0 chr9 134785723 134785745 -7485699 + AT_rich Low_complexity Low_complexity 1 22 0 1430 244 146 20 chr9 134786202 134786338 -7485106 - L1ME3A LINE L1 -1 6169 6052 1647 105 0 0 chr9 134786338 134786557 -7484887 + AluSx SINE Alu 1 219 -93 1430 244 146 20 chr9 134786557 134787217 -7484227 - L1ME3A LINE L1 -118 6052 5177 183 80 0 0 chr9 134787217 134787242 -7484202 + (CA)n Simple_repeat Simple_repeat 2 26 0 1430 244 146 20 chr9 134787242 134787492 -7483952 - L1ME3A LINE L1 -993 5177 4960 702 301 144 45 chr9 134787750 134788650 -7482794 + L2 LINE L2 2318 3312 -1 386 283 9 19 chr9 134789337 134789443 -7482001 + MIR SINE MIR 39 143 -119 25 31 0 0 chr9 134789481 134789513 -7481931 + AT_rich Low_complexity Low_complexity 1 32 0 816 267 78 0 chr9 134789627 134789859 -7481585 - MIR SINE MIR -5 257 8 1612 137 10 63 chr9 134790538 134790838 -7480606 - AluJo SINE Alu -12 300 17 183 24 24 71 chr9 134790907 134790949 -7480495 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 336 330 32 65 chr9 134790978 134791163 -7480281 - MIR SINE MIR -33 229 51 1671 169 21 4 chr9 134791220 134791499 -7479945 - AluJb SINE Alu -17 295 12 280 283 160 9 chr9 134792134 134792240 -7479204 - MIR SINE MIR -126 136 15 27 0 0 0 chr9 134792643 134792670 -7478774 + AT_rich Low_complexity Low_complexity 1 27 0 1368 93 6 6 chr9 134792670 134792852 -7478592 - L1PB1 LINE L1 -7 6144 5963 205 184 20 41 chr9 134792852 134792901 -7478543 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 505 77 31 0 chr9 134792904 134792969 -7478475 - AluSg/x SINE Alu -30 279 213 836 96 0 0 chr9 134792969 134793073 -7478371 - AluSq/x SINE Alu -205 107 4 5318 153 13 38 chr9 134793074 134794552 -7476892 - L1PB1 LINE L1 -176 5975 4557 2603 65 0 0 chr9 134794552 134794861 -7476583 - AluY SINE Alu -2 309 1 5318 153 13 38 chr9 134794861 134795263 -7476181 - L1PB1 LINE L1 -1594 4557 4147 970 219 24 0 chr9 134795397 134795566 -7475878 - FAM SINE Alu -2 173 1 183 42 0 0 chr9 134795572 134795596 -7475848 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1633 163 14 24 chr9 134795600 134795888 -7475556 - AluJo SINE Alu -26 286 2 2255 106 0 22 chr9 134795889 134796063 -7475381 - AluSx SINE Alu -7 305 140 2220 131 0 0 chr9 134796063 134796375 -7475069 - AluSx SINE Alu 0 312 1 2255 106 0 22 chr9 134796375 134796512 -7474932 - AluSx SINE Alu -172 140 1 2028 140 0 0 chr9 134796515 134796808 -7474636 - AluSx SINE Alu -19 293 1 1463 116 65 0 chr9 134797247 134797462 -7473982 - AluSq SINE Alu -84 229 1 799 181 0 22 chr9 134797504 134797642 -7473802 - FLAM_C SINE Alu -7 136 2 508 271 43 64 chr9 134797927 134798005 -7473439 + L1ME4a LINE L1 5522 5600 -521 2376 87 3 3 chr9 134798005 134798315 -7473129 + AluSp SINE Alu 1 310 -3 508 271 43 64 chr9 134798315 134798565 -7472879 + L1ME4a LINE L1 5600 5843 -278 2361 77 0 3 chr9 134799689 134799986 -7471458 - AluSg SINE Alu -14 296 1 1284 173 124 73 chr9 134800155 134800334 -7471110 - MER7A DNA MER2_type -2693 345 177 1554 99 80 0 chr9 134800334 134800547 -7470897 - MER30 DNA MER1_type 0 230 1 1284 173 124 73 chr9 134800547 134800697 -7470747 - MER7A DNA MER2_type -2861 177 1 230 257 14 0 chr9 134801036 134801106 -7470338 - L1ME3 LINE L1 0 6162 6092 373 269 75 22 chr9 134801682 134801816 -7469628 + MIR SINE MIR 49 189 -73 200 247 0 12 chr9 134802624 134802705 -7468739 + (TG)n Simple_repeat Simple_repeat 2 81 0 27 29 0 0 chr9 134802974 134803008 -7468436 + AT_rich Low_complexity Low_complexity 1 34 0 804 145 0 0 chr9 134803008 134803125 -7468319 - AluJb SINE Alu -195 117 1 862 162 108 36 chr9 134803559 134803726 -7467718 + AluJo SINE Alu 124 302 -10 3759 171 40 4 chr9 134803891 134804570 -7466874 + L1MB3 LINE L1 5480 6182 -1 249 221 15 15 chr9 134804623 134804691 -7466753 - L1ME LINE L1 -279 5842 5775 250 194 42 28 chr9 134804725 134804797 -7466647 - L1ME LINE L1 -421 5700 5628 302 210 226 48 chr9 134804811 134804935 -7466509 - L2 LINE L2 0 3313 3168 228 273 61 0 chr9 134805055 134805121 -7466323 - L1ME3 LINE L1 -80 6082 6013 28 71 0 0 chr9 134805189 134805245 -7466199 + AT_rich Low_complexity Low_complexity 1 56 0 884 236 86 11 chr9 134805317 134805584 -7465860 - L1MC4 LINE L1 -143 7899 7613 1497 253 96 24 chr9 134805629 134806314 -7465130 - L1ME3 LINE L1 -208 5962 5162 1805 167 0 16 chr9 134806314 134806619 -7464825 - AluJo SINE Alu -12 300 1 1497 253 96 24 chr9 134806619 134806790 -7464654 - L1ME3 LINE L1 -1008 5162 5005 1142 246 97 13 chr9 134806793 134807175 -7464269 - L1ME1 LINE L1 -5 6161 5748 403 321 31 0 chr9 134807168 134807327 -7464117 - L1ME3 LINE L1 -1156 4990 4827 * 2309 100 0 10 chr9 134807454 134807763 -7463681 - AluSc SINE Alu -3 306 1 650 185 0 34 chr9 134807791 134807910 -7463534 + FLAM_A SINE Alu 1 115 -18 757 188 19 0 chr9 134807917 134808071 -7463373 - MER3 DNA MER1_type -86 123 14 739 252 76 14 chr9 134808082 134808292 -7463152 - MER58A DNA MER1_type -1 223 1 1434 161 20 0 chr9 134808371 134808619 -7462825 + L1MB3 LINE L1 5930 6182 -1 878 89 0 0 chr9 134808639 134808751 -7462693 + AluSp/q SINE Alu 184 295 -18 875 254 123 32 chr9 134808782 134809216 -7462228 - L1ME3 LINE L1 -1522 4624 4010 300 53 0 0 chr9 134809216 134809254 -7462190 + (TTA)n Simple_repeat Simple_repeat 2 39 0 875 254 123 32 chr9 134809254 134809403 -7462041 - L1ME3 LINE L1 -2136 4010 3876 522 153 5 7 chr9 134809887 134809976 -7461468 - MLT1E2 LTR MaLR 0 626 469 8139 29 0 0 chr9 134809982 134810968 -7460476 - L1PA3 LINE L1 0 6155 5170 1062 166 11 0 chr9 134810979 134811160 -7460284 + MER3 DNA MER1_type 18 200 -9 308 281 66 54 chr9 134811013 134811180 -7460264 - MER3 DNA MER1_type -4 205 37 * 2176 112 0 13 chr9 134811472 134811785 -7459659 - AluSg SINE Alu -1 309 1 275 111 0 0 chr9 134811789 134811834 -7459610 - Alu SINE Alu 0 302 258 877 158 0 0 chr9 134811834 134811961 -7459483 - AluJo/FLAM SINE Alu -185 127 1 2382 98 0 16 chr9 134812859 134813176 -7458268 - AluSx SINE Alu 0 312 1 968 138 0 0 chr9 134814458 134814588 -7456856 + FLAM_C SINE Alu 1 130 -3 242 301 155 3 chr9 134814610 134814725 -7456719 - MIR SINE MIR -65 143 15 1853 167 0 16 chr9 134814746 134815051 -7456393 - AluJb SINE Alu -12 300 1 667 150 16 47 chr9 134815322 134815449 -7455995 + MER20 DNA MER1_type 93 215 -4 323 346 79 0 chr9 134816241 134816342 -7455102 + L2 LINE L2 3134 3242 -30 1529 178 10 30 chr9 134817392 134817718 -7453726 - AluJb SINE Alu 0 325 6 181 259 17 86 chr9 134818660 134818718 -7452726 + L2 LINE L2 3254 3307 -6 21 0 0 0 chr9 134818841 134818862 -7452582 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr9 134819245 134819271 -7452173 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 931 286 78 52 chr9 134819271 134819733 -7451711 - L2 LINE L2 -13 3300 2827 2399 149 83 11 chr9 134819737 134820470 -7450974 - L1M3 LINE L1 -485 5695 4912 * 2821 201 46 77 chr9 134820468 134820534 -7450910 - L1MEc LINE L1 -3985 2411 2345 546 116 18 89 chr9 134820534 134820646 -7450798 + L1MB3 LINE L1 6080 6183 0 2821 201 46 77 chr9 134820646 134820682 -7450762 - L1MEc LINE L1 -4051 2345 2309 2332 104 11 70 chr9 134820682 134821037 -7450407 + MER1B DNA MER1_type 2 335 -2 2821 201 46 77 chr9 134821037 134821522 -7449922 - L1MEc LINE L1 -4087 2309 1857 2229 89 0 0 chr9 134821522 134821803 -7449641 - AluSx SINE Alu -31 281 1 2821 201 46 77 chr9 134821803 134822102 -7449342 - L1MEc LINE L1 -4539 1857 1550 2306 110 3 0 chr9 134822439 134822748 -7448696 - AluSx SINE Alu -2 310 1 2413 83 0 7 chr9 134822754 134823054 -7448390 - AluSx SINE Alu -14 298 1 2283 119 0 0 chr9 134825795 134826105 -7445339 - AluSx SINE Alu -2 310 1 279 321 76 54 chr9 134826356 134826578 -7444866 - MIR SINE MIR -30 232 13 397 279 54 0 chr9 134827144 134827255 -7444189 - L2 LINE L2 0 3313 3197 263 154 0 0 chr9 134827657 134827696 -7443748 - 5S rRNA rRNA -82 39 1 304 287 50 72 chr9 134829228 134829409 -7442035 - L1MC4a LINE L1 -1898 5910 5734 2186 105 0 14 chr9 134829600 134829906 -7441538 + AluSx SINE Alu 1 302 0 240 35 0 0 chr9 134830585 134830614 -7440830 + (T)n Simple_repeat Simple_repeat 1 29 0 1995 156 0 3 chr9 134831086 134831387 -7440057 + AluJo SINE Alu 11 310 -2 22 0 0 0 chr9 134831498 134831520 -7439924 + AT_rich Low_complexity Low_complexity 1 22 0 2088 138 3 22 chr9 134832051 134832369 -7439075 - AluSx SINE Alu 0 312 1 22 0 0 0 chr9 134832464 134832486 -7438958 + AT_rich Low_complexity Low_complexity 1 22 0 815 172 0 0 chr9 134832638 134832766 -7438678 - AluJb SINE Alu -63 249 122 821 142 55 16 chr9 134832821 134832948 -7438496 - AluJb SINE Alu -179 133 2 2240 83 7 0 chr9 134834162 134834440 -7437004 + AluSp SINE Alu 1 280 -33 2148 117 0 16 chr9 134834572 134834879 -7436565 - AluSg SINE Alu -8 302 1 669 277 116 9 chr9 134834892 134835116 -7436328 - MIR SINE MIR -13 249 2 186 280 0 20 chr9 134837755 134837805 -7433639 - L3 LINE CR1 -13 1564 1516 189 291 190 0 chr9 134838284 134838363 -7433081 - L2 LINE L2 -1 3271 3178 191 273 0 36 chr9 134838657 134838712 -7432732 - MIR SINE MIR -101 107 55 929 126 0 0 chr9 134838712 134838847 -7432597 + AluSq/x SINE Alu 1 135 -178 2207 93 3 0 chr9 134838847 134839147 -7432297 + AluSx SINE Alu 2 302 -10 1086 104 6 12 chr9 134839605 134839768 -7431676 + AluSc SINE Alu 1 162 -147 1241 143 33 0 chr9 134839792 134840002 -7431442 + AluSc SINE Alu 83 299 -10 1322 173 8 4 chr9 134840389 134840632 -7430812 - AluJo SINE Alu -19 293 50 229 323 0 0 chr9 134840768 134840830 -7430614 + (TA)n Simple_repeat Simple_repeat 1 62 0 1668 154 0 55 chr9 134840830 134841160 -7430284 - AluSx SINE Alu 0 312 1 591 169 0 85 chr9 134841297 134841333 -7430111 - MIR SINE MIR -21 241 204 2140 85 0 0 chr9 134841333 134841663 -7429781 - AluY SINE Alu 0 330 1 591 169 0 85 chr9 134841663 134841786 -7429658 - MIR SINE MIR -58 204 99 228 313 0 36 chr9 134842056 134842168 -7429276 + L1ME LINE L1 52 159 -5960 236 274 80 35 chr9 134842714 134842827 -7428617 + L1ME LINE L1 895 1012 -5107 993 218 5 11 chr9 134842835 134843023 -7428421 - MER58A DNA MER1_type -33 191 5 449 265 195 26 chr9 134843024 134843490 -7427954 + L1ME LINE L1 1005 1596 -4714 349 111 0 0 chr9 134843495 134843554 -7427890 + Alu SINE Alu 246 295 -5 1368 220 48 18 chr9 134843626 134844077 -7427367 + L1ME LINE L1 5182 5800 -345 1935 131 40 0 chr9 134844103 134844401 -7427043 - AluSx SINE Alu -2 310 1 482 257 102 75 chr9 134844415 134844552 -7426892 + L1ME3A LINE L1 5653 5785 -385 1861 147 6 10 chr9 134844552 134844864 -7426580 - AluJb SINE Alu -1 311 1 1573 166 17 17 chr9 134844867 134845163 -7426281 - AluJb SINE Alu -16 296 1 482 257 102 75 chr9 134845163 134845247 -7426197 + L1ME3A LINE L1 5786 5884 -286 398 235 122 10 chr9 134845364 134845462 -7425982 + L2 LINE L2 3204 3312 -1 1508 255 141 36 chr9 134845614 134846147 -7425297 - MLT1G1 LTR MaLR -6 589 1 2545 141 14 96 chr9 134846353 134846834 -7424610 + L1MB4 LINE L1 5364 5883 -297 2492 56 0 0 chr9 134846834 134847140 -7424304 + AluY SINE Alu 1 306 -5 2545 141 14 96 chr9 134847140 134847154 -7424290 + L1MB4 LINE L1 5883 5897 -283 2092 91 10 3 chr9 134847154 134847451 -7423993 + AluSc SINE Alu 1 299 -10 2545 141 14 96 chr9 134847451 134847507 -7423937 + L1MB4 LINE L1 5897 5956 -224 1529 174 0 37 chr9 134847507 134847801 -7423643 + AluJb SINE Alu 1 283 -29 1949 133 0 10 chr9 134847811 134848112 -7423332 - AluSx SINE Alu -14 298 1 2545 141 14 96 chr9 134848112 134848128 -7423316 + L1MB4 LINE L1 5880 5896 -284 695 230 108 63 chr9 134848619 134848766 -7422678 + L1ME LINE L1 693 832 -5238 2238 81 3 0 chr9 134848766 134849062 -7422382 + AluSg SINE Alu 1 297 -13 695 230 108 63 chr9 134849062 134849292 -7422152 + L1ME LINE L1 832 1087 -4983 550 200 47 16 chr9 134849309 134849480 -7421964 + L1M4 LINE L1 4415 4589 -1557 370 280 166 16 chr9 134849519 134849712 -7421732 - L2 LINE L2 -62 3251 3030 922 195 43 59 chr9 134849732 134849949 -7421495 - L1MC5 LINE L1 -370 7591 7379 6162 135 29 26 chr9 134849949 134851017 -7420427 + MER11C LTR ERVK 1 1071 0 922 195 43 59 chr9 134851017 134851102 -7420342 - L1MC5 LINE L1 -582 7379 7294 670 230 83 23 chr9 134851148 134851413 -7420031 + L1MC5 LINE L1 7640 7920 -41 2075 108 10 0 chr9 134851597 134851893 -7419551 - AluSp SINE Alu -14 299 1 333 0 0 0 chr9 134852170 134852207 -7419237 + (TTG)n Simple_repeat Simple_repeat 2 38 0 468 258 264 45 chr9 134852229 134852543 -7418901 - L2 LINE L2 -357 2957 2575 183 267 78 33 chr9 134852595 134852685 -7418759 + MIR SINE MIR 168 261 -1 348 304 7 15 chr9 134852698 134852833 -7418611 - MIR SINE MIR -3 259 126 2108 103 45 0 chr9 134854316 134854608 -7416836 - AluSq SINE Alu -8 305 1 2301 84 3 10 chr9 134854632 134854942 -7416502 - AluY SINE Alu -1 310 3 2259 86 20 0 chr9 134854944 134855245 -7416199 - AluSx SINE Alu -5 307 1 232 189 0 0 chr9 134855567 134855620 -7415824 + Alu SINE Alu 250 302 0 182 243 230 0 chr9 134855962 134856036 -7415408 - MIR SINE MIR -60 148 58 514 228 123 22 chr9 134856266 134856441 -7415003 - MER63A DNA MER1_type 0 210 17 267 319 13 57 chr9 134857132 134857289 -7414155 + L2 LINE L2 2716 2865 -449 428 278 80 20 chr9 134857513 134857711 -7413733 - MIR SINE MIR -6 256 40 363 332 159 9 chr9 134859016 134859236 -7412208 - MIR SINE MIR -9 253 1 2183 103 0 0 chr9 134861581 134861883 -7409561 - AluSc SINE Alu -7 302 1 24 0 0 0 chr9 134862118 134862142 -7409302 + AT_rich Low_complexity Low_complexity 1 24 0 2636 35 0 0 chr9 134862142 134862452 -7408992 - AluY SINE Alu -1 310 1 283 237 175 0 chr9 134862462 134862576 -7408868 - L1ME3A LINE L1 -3 6167 6034 809 122 0 0 chr9 134863418 134863533 -7407911 + FLAM_C SINE Alu 20 134 -9 1742 168 0 20 chr9 134863551 134863854 -7407590 + AluJb SINE Alu 3 299 -13 424 271 167 11 chr9 134864436 134864648 -7406796 + MIR SINE MIR 7 249 -13 1837 125 50 4 chr9 134869298 134869579 -7401865 + AluJo SINE Alu 1 294 -18 2047 72 4 0 chr9 134869624 134869887 -7401557 - AluY SINE Alu -25 286 23 195 362 128 21 chr9 134870139 134870280 -7401164 - MIR SINE MIR -72 190 35 198 0 0 0 chr9 134870331 134870353 -7401091 + (A)n Simple_repeat Simple_repeat 1 22 0 1686 151 14 3 chr9 134871147 134871438 -7400006 + AluJb SINE Alu 1 294 -18 1856 107 12 86 chr9 134871448 134871774 -7399670 + AluSx SINE Alu 1 302 -10 275 301 53 53 chr9 134874689 134874822 -7396622 + MIR SINE MIR 60 192 -70 191 333 49 0 chr9 134875056 134875137 -7396307 - MER5A DNA MER1_type -89 100 16 2094 114 7 0 chr9 134875484 134875791 -7395653 - AluSx SINE Alu -3 309 1 419 242 70 25 chr9 134876154 134876311 -7395133 + MER103 DNA DNA 2 165 -1 365 255 125 29 chr9 134876445 134876653 -7394791 - MIR SINE MIR 0 262 35 321 86 35 52 chr9 134878412 134878470 -7392974 + Alu SINE Alu 250 306 -2 1534 242 45 15 chr9 134878470 134879049 -7392395 + L1MEc LINE L1 133 771 -5625 1913 139 0 3 chr9 134879351 134879652 -7391792 + AluSx SINE Alu 2 301 -11 717 144 0 79 chr9 134879659 134879798 -7391646 + AluSg SINE Alu 2 129 -181 2189 104 0 7 chr9 134880077 134880384 -7391060 + AluSx SINE Alu 1 305 -7 1796 150 0 38 chr9 134880406 134880719 -7390725 + AluJb SINE Alu 1 301 -11 1115 95 0 7 chr9 134880776 134880923 -7390521 + AluSq/x SINE Alu 1 146 -166 1105 258 43 45 chr9 134880923 134881014 -7390430 + L1MEc LINE L1 827 917 -5479 2501 40 0 0 chr9 134881014 134881311 -7390133 + AluY SINE Alu 1 297 -14 1105 258 43 45 chr9 134881311 134881703 -7389741 + L1MEc LINE L1 917 1309 -5087 409 191 77 107 chr9 134881673 134881767 -7389677 + L1MEc LINE L1 1770 1859 -4537 * 2268 41 3 28 chr9 134881767 134882082 -7389362 + AluY SINE Alu 1 308 0 409 191 77 107 chr9 134882082 134882154 -7389290 + L1MEc LINE L1 1859 1932 -4464 2395 78 0 7 chr9 134882154 134882462 -7388982 + AluY SINE Alu 1 306 -5 3481 210 62 131 chr9 134882466 134882525 -7388919 + L1MEc LINE L1 2575 2637 -3578 1817 165 0 0 chr9 134882525 134882828 -7388616 - AluJo SINE Alu -5 307 5 3481 210 62 131 chr9 134882828 134883014 -7388430 + L1MEc LINE L1 2637 2834 -3381 8439 51 4 4 chr9 134883014 134884021 -7387423 + LTR13 LTR ERVK 1 1007 0 3481 210 62 131 chr9 134884021 134884296 -7387148 + L1MEc LINE L1 2834 3126 -3089 1923 142 3 0 chr9 134884296 134884606 -7386838 + AluSq SINE Alu 2 312 0 1145 145 0 0 chr9 134884606 134884785 -7386659 + AluSg/x SINE Alu 133 311 -1 3481 210 62 131 chr9 134884785 134886022 -7385422 + L1MEc LINE L1 3125 4446 -1769 1751 153 7 20 chr9 134886022 134886316 -7385128 - AluSx SINE Alu -22 290 1 3481 210 62 131 chr9 134886316 134886504 -7384940 + L1MEc LINE L1 4446 4485 -1730 2223 80 3 7 chr9 134886504 134886805 -7384639 + AluY SINE Alu 1 300 -11 3481 210 62 131 chr9 134886805 134887121 -7384323 + L1MEc LINE L1 4485 4821 -1394 2027 147 0 0 chr9 134887122 134887429 -7384015 + AluSx SINE Alu 1 307 -5 34 0 0 0 chr9 134887429 134887463 -7383981 + AT_rich Low_complexity Low_complexity 1 34 0 1291 221 64 18 chr9 134887495 134887884 -7383560 + L1MEc LINE L1 4799 5205 -1010 1682 197 0 7 chr9 134887884 134888020 -7383424 + AluJb SINE Alu 1 136 -176 1759 100 108 4 chr9 134888020 134888289 -7383155 + AluSq SINE Alu 1 297 -16 1682 197 0 7 chr9 134888289 134888451 -7382993 + AluJb SINE Alu 136 297 -15 2180 92 3 32 chr9 134888568 134888882 -7382562 + AluSx SINE Alu 1 305 -7 2569 30 0 3 chr9 134888890 134889191 -7382253 - AluY SINE Alu -11 300 1 439 226 28 0 chr9 134889191 134889311 -7382133 + L1MB2 LINE L1 5937 6066 -105 2174 97 3 0 chr9 134889387 134889677 -7381767 - AluSq SINE Alu -22 291 1 1839 123 4 7 chr9 134890053 134890330 -7381114 - AluJo SINE Alu -36 276 1 258 328 126 0 chr9 134890368 134890487 -7380957 - MIR SINE MIR -16 246 113 337 374 35 6 chr9 134890498 134890669 -7380775 - MIR SINE MIR -3 259 84 708 239 30 5 chr9 134891120 134891321 -7380123 + MLT1A1 LTR MaLR 157 362 -3 352 119 8 203 chr9 134891322 134891368 -7380076 + L1MB8 LINE L1 6075 6128 -50 1427 133 88 54 chr9 134891368 134891517 -7379927 - AluJb SINE Alu -8 304 162 2156 122 0 0 chr9 134891517 134891821 -7379623 - AluSg1 SINE Alu -5 304 1 1427 133 88 54 chr9 134891821 134891965 -7379479 - AluJb SINE Alu -150 162 1 352 119 8 203 chr9 134891965 134891977 -7379467 + L1MB8 LINE L1 6128 6141 -37 1987 117 31 10 chr9 134891977 134892268 -7379176 - AluSx SINE Alu -15 297 1 352 119 8 203 chr9 134892268 134892326 -7379118 + L1MB8 LINE L1 6141 6169 -9 219 258 44 13 chr9 134892619 134892712 -7378732 - MIR SINE MIR -74 134 38 2200 82 14 0 chr9 134892966 134893257 -7378187 + AluSq SINE Alu 1 295 -18 259 379 24 8 chr9 134893399 134893523 -7377921 + MIR SINE MIR 21 146 -116 2170 107 0 7 chr9 134893803 134894102 -7377342 - AluSg SINE Alu -13 297 1 576 0 0 0 chr9 134894677 134894741 -7376703 + (CA)n Simple_repeat Simple_repeat 2 65 0 566 311 12 6 chr9 134895286 134895447 -7375997 + MIR SINE MIR 46 207 -55 2294 107 3 0 chr9 134895512 134895820 -7375624 - AluSx SINE Alu -3 309 1 221 314 186 10 chr9 134895822 134895924 -7375520 - MIR SINE MIR -115 147 28 1993 124 7 13 chr9 134900364 134900499 -7370945 + AluSx SINE Alu 1 135 -177 1642 92 80 16 chr9 134900499 134900748 -7370696 + AluSg SINE Alu 35 299 -11 1993 124 7 13 chr9 134900748 134900911 -7370533 + AluSx SINE Alu 135 297 -15 400 109 0 0 chr9 134900921 134900976 -7370468 + AluSx SINE Alu 3 57 -256 2355 167 11 17 chr9 134901008 134901377 -7370067 + L1MB3 LINE L1 5688 6055 -128 2266 107 3 0 chr9 134901377 134901687 -7369757 + AluSq SINE Alu 1 311 -2 2355 167 11 17 chr9 134901687 134901784 -7369660 + L1MB3 LINE L1 6055 6151 -32 1895 105 0 0 chr9 134901794 134902052 -7369392 + AluSx SINE Alu 55 312 0 2182 98 3 3 chr9 134903146 134903443 -7368001 - AluSx SINE Alu -15 297 1 391 290 77 63 chr9 134903455 134903676 -7367768 - L1MEc LINE L1 -4172 2224 2001 1972 138 24 0 chr9 134903677 134903968 -7367476 - AluSq SINE Alu -15 298 1 1082 51 7 15 chr9 134903968 134904105 -7367339 - AluSq/x SINE Alu -177 136 1 297 259 12 0 chr9 134904115 134904196 -7367248 - MER45 DNA AcHobo -932 108 27 223 252 76 67 chr9 134904584 134904703 -7366741 + L2 LINE L2 2637 2756 -558 208 80 0 60 chr9 134904887 134904937 -7366507 + (TCC)n Simple_repeat Simple_repeat 2 48 0 202 331 28 101 chr9 134904937 134905254 -7366190 + L2 LINE L2 2966 3259 -13 227 256 128 13 chr9 134905491 134905569 -7365875 - MIR SINE MIR -120 142 56 256 226 146 0 chr9 134905595 134905670 -7365774 - AluJ/FLAM SINE Alu -230 72 1 1378 167 0 51 chr9 134905692 134905967 -7365477 + AluJo SINE Alu 36 296 -16 2504 45 0 23 chr9 134906183 134906492 -7364952 + AluY SINE Alu 1 302 -9 2148 62 31 7 chr9 134907038 134907328 -7364116 + AluY SINE Alu 1 297 -14 717 111 14 14 chr9 134907337 134907544 -7363900 + AluSq SINE Alu 1 306 -7 317 324 125 44 chr9 134907629 134907903 -7363541 - L1MC4a LINE L1 -1826 5982 5681 2210 102 7 0 chr9 134907903 134908196 -7363248 - AluSx SINE Alu -17 295 1 317 324 125 44 chr9 134908196 134908217 -7363227 - L1MC4a LINE L1 -2127 5681 5663 1991 113 0 36 chr9 134908332 134908634 -7362810 + AluSq SINE Alu 1 291 -22 1413 142 0 18 chr9 134909419 134909644 -7361800 - AluJb SINE Alu -6 306 86 353 297 186 0 chr9 134909817 134909962 -7361482 - MIR SINE MIR -2 260 89 681 215 11 42 chr9 134910720 134910911 -7360533 + MER20 DNA MER1_type 1 185 -34 2119 110 0 7 chr9 134911081 134911381 -7360063 + AluSx SINE Alu 14 311 -1 500 306 14 0 chr9 134912229 134912376 -7359068 - MIR SINE MIR -66 196 48 23 0 0 0 chr9 134915425 134915448 -7355996 + GC_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 134915516 134915542 -7355902 + GC_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 134916095 134916123 -7355321 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 134916146 134916167 -7355277 + GC_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr9 134916251 134916291 -7355153 + GC_rich Low_complexity Low_complexity 1 40 0 40 87 0 0 chr9 134916346 134916449 -7354995 + GC_rich Low_complexity Low_complexity 1 103 0 180 0 0 0 chr9 134916462 134916482 -7354962 + (CGG)n Simple_repeat Simple_repeat 2 21 0 217 301 75 23 chr9 134916927 134917060 -7354384 - MIR SINE MIR -36 226 87 208 305 37 49 chr9 134917662 134917744 -7353700 + L2 LINE L2 3009 3089 -224 234 237 10 74 chr9 134919266 134919362 -7352082 - MIR SINE MIR -18 190 108 202 275 43 0 chr9 134919887 134919956 -7351488 - MIR3 SINE MIR -29 179 108 326 304 30 6 chr9 134920619 134920787 -7350657 + (TG)n Simple_repeat Simple_repeat 1 172 0 429 284 17 0 chr9 134920822 134920998 -7350446 + (TG)n Simple_repeat Simple_repeat 1 179 0 21 36 0 0 chr9 134921436 134921464 -7349980 + GC_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr9 134921471 134921504 -7349940 + GC_rich Low_complexity Low_complexity 1 33 0 319 273 53 72 chr9 134921907 134922088 -7349356 - L2 LINE L2 -32 3281 3103 2135 123 0 3 chr9 134922088 134922390 -7349054 + AluSx SINE Alu 1 301 -11 319 273 53 72 chr9 134922390 134922417 -7349027 - L2 LINE L2 -210 3103 3077 1989 152 0 0 chr9 134923018 134923314 -7348130 + AluJb SINE Alu 1 296 -16 191 122 0 49 chr9 134923321 134923362 -7348082 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 428 274 13 46 chr9 134923406 134923559 -7347885 + MIR3 SINE MIR 9 156 -52 2111 95 36 13 chr9 134923699 134924005 -7347439 - AluSq SINE Alu 0 313 1 2226 95 3 0 chr9 134924005 134924299 -7347145 - AluSq SINE Alu -18 295 1 456 261 99 36 chr9 134924328 134924581 -7346863 + L1ME4a LINE L1 5673 5941 -180 1972 146 3 7 chr9 134924586 134924887 -7346557 + AluSx SINE Alu 1 300 -12 291 54 0 0 chr9 134925266 134925303 -7346141 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 958 111 0 15 chr9 134925365 134925500 -7345944 + FLAM_C SINE Alu 1 133 0 301 287 127 26 chr9 134925708 134925866 -7345578 - MIR SINE MIR -22 186 13 274 287 81 22 chr9 134926177 134926313 -7345131 + MIR SINE MIR 103 246 -16 599 341 51 0 chr9 134926718 134926935 -7344509 - MIR SINE MIR -25 237 10 180 288 30 30 chr9 134926927 134926993 -7344451 - L3 LINE CR1 -125 1452 1387 * 2240 78 6 75 chr9 134929966 134930301 -7341143 - AluSx SINE Alu 0 312 1 386 296 11 34 chr9 134930320 134930514 -7340930 - MIR SINE MIR -48 214 25 560 271 89 35 chr9 134930787 134930990 -7340454 - MIR SINE MIR -12 250 37 549 247 49 32 chr9 134931402 134931646 -7339798 - MIR SINE MIR -2 260 14 398 267 23 38 chr9 134932057 134932188 -7339256 + MIR SINE MIR 22 152 -56 464 246 103 8 chr9 134932588 134932714 -7338730 + MIR SINE MIR 7 144 -118 180 176 0 0 chr9 134932793 134932827 -7338617 + (CAT)n Simple_repeat Simple_repeat 2 35 0 841 226 128 23 chr9 134933071 134933363 -7338081 - AluSx SINE Alu 0 319 1 536 118 0 0 chr9 134933373 134933449 -7337995 - AluSc SINE Alu -13 296 221 282 194 0 0 chr9 134933505 134933567 -7337877 + LTR5 LTR ERVK 908 969 0 358 299 158 5 chr9 134934334 134934518 -7336926 - MIR SINE MIR -19 243 32 1954 115 7 24 chr9 134934638 134934933 -7336511 - AluSx SINE Alu 0 312 23 27 0 0 0 chr9 134935136 134935163 -7336281 + AT_rich Low_complexity Low_complexity 1 27 0 2195 115 0 0 chr9 134935193 134935497 -7335947 + AluSg SINE Alu 6 309 -1 2208 93 0 0 chr9 134935544 134935835 -7335609 + AluSx SINE Alu 1 291 -21 435 293 67 18 chr9 134935867 134935997 -7335447 - MIR SINE MIR -14 248 107 1852 186 145 16 chr9 134935997 134936444 -7335000 + MLT1D LTR MaLR 1 505 0 435 293 67 18 chr9 134936444 134936477 -7334967 - MIR SINE MIR -155 107 77 2195 113 0 0 chr9 134936500 134936802 -7334642 + AluSg SINE Alu 1 302 -8 2457 66 0 0 chr9 134936806 134937109 -7334335 + AluY SINE Alu 5 307 -4 221 310 0 0 chr9 134937270 134937341 -7334103 - L2 LINE L2 -18 3254 3184 1975 96 29 0 chr9 134937373 134937653 -7333791 + AluSg SINE Alu 1 288 -22 2109 106 0 0 chr9 134937690 134937982 -7333462 - AluSg SINE Alu -18 292 1 4089 184 15 11 chr9 134938005 134938757 -7332687 - L1MB3 LINE L1 -2 6181 5427 1874 131 38 0 chr9 134938793 134939084 -7332360 - AluSx SINE Alu -10 302 1 2112 117 3 0 chr9 134939915 134940215 -7331229 - AluSx SINE Alu -11 301 1 996 314 44 35 chr9 134940244 134940817 -7330627 - L1ME4a LINE L1 -18 6103 5526 233 224 0 17 chr9 134940799 134940857 -7330587 - HAL1 LINE L1 -1864 643 587 * 1037 217 121 14 chr9 134942553 134942834 -7328610 - MSTD LTR MaLR -1 395 85 1892 151 10 6 chr9 134942936 134943247 -7328197 + AluJo SINE Alu 1 312 0 1986 116 0 0 chr9 134943485 134943797 -7327647 - AluSx SINE Alu 0 318 7 2448 62 0 7 chr9 134944342 134944650 -7326794 - AluSx SINE Alu -6 306 1 2439 75 0 0 chr9 134945581 134945887 -7325557 + AluSp SINE Alu 1 306 -7 350 222 121 0 chr9 134946183 134946282 -7325162 - MER81 DNA DNA -2 112 2 284 373 118 0 chr9 134946321 134946474 -7324970 - MIR SINE MIR -91 171 1 2068 134 0 6 chr9 134946882 134947196 -7324248 + AluSx SINE Alu 1 312 0 921 197 43 21 chr9 134947565 134947799 -7323645 + L1MB5 LINE L1 5540 5778 -402 1415 200 7 18 chr9 134947799 134948084 -7323360 + AluJo SINE Alu 1 282 -30 675 146 0 10 chr9 134948137 134948240 -7323204 - AluJb SINE Alu -125 187 86 1317 183 5 0 chr9 134948240 134948459 -7322985 - AluJo SINE Alu -92 220 1 2379 73 0 0 chr9 134948488 134948790 -7322654 + AluY SINE Alu 3 304 -7 2188 122 0 0 chr9 134948790 134949102 -7322342 + AluSx SINE Alu 1 312 0 2013 167 47 10 chr9 134949104 134949487 -7321957 + L1MB5 LINE L1 5778 6174 0 1957 140 0 10 chr9 134949496 134949804 -7321640 + AluSx SINE Alu 1 305 -7 2199 105 3 10 chr9 134949805 134950119 -7321325 + AluSq SINE Alu 1 312 -1 299 288 299 7 chr9 134950119 134950390 -7321054 - L2 LINE L2 -151 3162 2813 575 284 12 0 chr9 134951338 134951500 -7319944 - MER103 DNA DNA -1 165 2 193 289 78 28 chr9 134952222 134952402 -7319042 - L2 LINE L2 -171 3101 2913 225 227 0 0 chr9 134952425 134952469 -7318975 - Charlie1 DNA MER1_type -2709 52 9 315 259 128 8 chr9 134952488 134952608 -7318836 - MIR SINE MIR -63 145 49 879 243 7 90 chr9 134952609 134952781 -7318663 - MLT1C LTR MaLR -202 265 125 2322 88 0 7 chr9 134952781 134953089 -7318355 - AluSq SINE Alu -7 306 1 879 243 7 90 chr9 134953089 134953204 -7318240 - MLT1C LTR MaLR -342 125 2 1995 109 3 11 chr9 134954066 134954351 -7317093 + AluSx SINE Alu 1 283 -29 445 119 0 0 chr9 134954452 134954519 -7316925 + Alu SINE Alu 241 307 -3 1438 148 57 15 chr9 134954524 134954662 -7316782 - AluJo SINE Alu -36 276 145 2004 113 16 23 chr9 134954662 134954971 -7316473 - AluSx SINE Alu -5 307 1 1438 148 57 15 chr9 134954971 134955095 -7316349 - AluJo SINE Alu -167 145 3 348 345 41 6 chr9 134955121 134955292 -7316152 - L1M4 LINE L1 -2281 3865 3689 470 246 0 8 chr9 134955548 134955666 -7315778 - MIR SINE MIR -113 149 33 1450 145 123 7 chr9 134956409 134956584 -7314860 - AluY SINE Alu -3 308 155 1507 84 0 5 chr9 134956584 134956787 -7314657 - AluY SINE Alu -16 295 94 2674 10 0 0 chr9 134956787 134957083 -7314361 - AluYa5 SINE Alu -13 298 1 1450 145 123 7 chr9 134957083 134957182 -7314262 - AluY SINE Alu -155 156 1 926 117 0 0 chr9 134957186 134957314 -7314130 - AluSq/x SINE Alu -180 133 6 2042 126 7 0 chr9 134957324 134957626 -7313818 - AluSx SINE Alu -8 304 1 278 271 243 9 chr9 134957899 134958006 -7313438 + MIR SINE MIR 20 151 -111 190 35 103 0 chr9 134958816 134958845 -7312599 + MIR SINE MIR 112 143 -65 1261 194 24 38 chr9 134958887 134959025 -7312419 + MLT1A1 LTR MaLR 16 154 -211 1907 139 0 7 chr9 134959025 134959319 -7312125 + AluSx SINE Alu 2 293 -19 1261 194 24 38 chr9 134959319 134959468 -7311976 + MLT1A1 LTR MaLR 154 299 -66 2277 109 0 0 chr9 134959468 134959780 -7311664 - AluSx SINE Alu 0 312 1 814 176 0 0 chr9 134959792 134959917 -7311527 - FLAM_C SINE Alu -17 126 2 1669 94 91 97 chr9 134959927 134960236 -7311208 - AluSx SINE Alu -5 307 1 695 164 112 0 chr9 134960577 134960693 -7310751 + FLAM_C SINE Alu 3 131 -12 206 246 101 0 chr9 134961279 134961348 -7310096 + MIR3 SINE MIR 117 192 -16 2211 86 0 3 chr9 134961699 134961991 -7309453 - AluSx SINE Alu -21 291 1 302 198 83 21 chr9 134962092 134962188 -7309256 - MER53 DNA DNA -65 124 23 * 310 207 98 0 chr9 134962117 134962199 -7309245 + MER53 DNA DNA 99 188 -1 2209 97 3 0 chr9 134962462 134962762 -7308682 + AluSq SINE Alu 1 301 -12 2305 44 17 10 chr9 134963325 134963622 -7307822 + AluY SINE Alu 1 299 -12 318 327 64 19 chr9 134963651 134963807 -7307637 - L1ME4a LINE L1 -123 5998 5836 2073 118 0 7 chr9 134963813 134964118 -7307326 + AluSx SINE Alu 1 303 -9 1744 164 14 14 chr9 134964127 134964420 -7307024 + AluSx SINE Alu 1 293 -19 2160 97 0 7 chr9 134964554 134964853 -7306591 + AluSq SINE Alu 1 297 -16 566 105 0 0 chr9 134964858 134964934 -7306510 + MADE1 DNA Mariner 1 76 -4 2072 110 20 0 chr9 134964950 134965251 -7306193 - AluSx SINE Alu -5 307 1 2943 174 80 10 chr9 134965252 134965862 -7305582 - L1MB5 LINE L1 -34 6140 5488 2342 86 0 0 chr9 134965865 134966167 -7305277 - AluSq SINE Alu -11 302 1 1550 164 3 62 chr9 134966168 134966492 -7304952 + MLT1B LTR MaLR 82 386 -4 479 252 16 16 chr9 134966719 134966842 -7304602 - MER5B DNA MER1_type -51 127 5 2400 63 0 3 chr9 134966850 134967153 -7304291 + AluY SINE Alu 1 302 -9 600 229 0 0 chr9 134967163 134967272 -7304172 + AluJo SINE Alu 2 110 -202 1303 156 5 0 chr9 134967320 134967531 -7303913 + AluJo SINE Alu 85 296 -16 360 271 33 16 chr9 134968145 134968267 -7303177 + MIR3 SINE MIR 36 159 -49 242 256 77 0 chr9 134968293 134968371 -7303073 + MLT1K LTR MaLR 485 568 -20 2276 40 43 0 chr9 134968790 134969066 -7302378 + AluY SINE Alu 13 300 -11 829 169 0 27 chr9 134969066 134969207 -7302237 - AluJo/FRAM SINE Alu -6 306 168 344 291 168 19 chr9 134969209 134969289 -7302155 - L1M4 LINE L1 -1559 4587 4520 1648 82 0 9 chr9 134969289 134969508 -7301936 + AluSg1 SINE Alu 1 217 -92 344 291 168 19 chr9 134969508 134969695 -7301749 - L1M4 LINE L1 -1626 4520 4280 283 253 55 55 chr9 134969806 134969897 -7301547 - L1P LINE L1 -2014 4132 4042 * 296 343 7 7 chr9 134969895 134970032 -7301412 - L1M4 LINE L1 -2166 3980 3844 1698 159 3 26 chr9 134970033 134970342 -7301102 - AluJo SINE Alu -10 302 1 396 0 0 0 chr9 134970433 134970477 -7300967 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 741 183 8 0 chr9 134970477 134970597 -7300847 + AluJb SINE Alu 2 122 -190 638 194 147 0 chr9 134970732 134970861 -7300583 - AluJb SINE Alu -31 281 134 1876 154 6 10 chr9 134970861 134971173 -7300271 - AluJb SINE Alu -1 311 1 1800 168 7 0 chr9 134971175 134971473 -7299971 - AluJb SINE Alu -12 300 1 1073 143 0 0 chr9 134971475 134971636 -7299808 - AluJb SINE Alu -12 300 140 608 317 25 5 chr9 134972486 134972688 -7298756 + MIR SINE MIR 20 225 -37 1690 166 34 3 chr9 134972691 134972986 -7298458 - AluJb SINE Alu -8 304 1 273 151 0 0 chr9 134973009 134973062 -7298382 + (TG)n Simple_repeat Simple_repeat 1 53 0 180 295 0 33 chr9 134973161 134973222 -7298222 - MIR SINE MIR -69 139 81 2275 59 3 11 chr9 134973332 134973618 -7297826 + AluSc SINE Alu 12 295 -14 2255 89 3 0 chr9 134974303 134974594 -7296850 + AluSx SINE Alu 1 292 -20 312 48 0 0 chr9 134974743 134974785 -7296659 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1798 139 14 11 chr9 134974787 134975067 -7296377 - AluJb SINE Alu -31 281 1 456 314 93 42 chr9 134975131 134975267 -7296177 + MIR SINE MIR 3 157 -105 2167 79 34 0 chr9 134975267 134975558 -7295886 + AluSq SINE Alu 1 301 -12 456 314 93 42 chr9 134975558 134975657 -7295787 + MIR SINE MIR 157 250 -12 1893 161 0 0 chr9 134975657 134975956 -7295488 - AluSx SINE Alu -12 300 2 1930 99 6 102 chr9 134975988 134976331 -7295113 - AluY SINE Alu -1 310 1 642 159 0 0 chr9 134976362 134976475 -7294969 + FLAM_C SINE Alu 29 141 -2 2010 109 44 0 chr9 134977029 134977323 -7294121 + AluSx SINE Alu 1 307 -5 261 0 0 0 chr9 134978031 134978060 -7293384 + (TTTTC)n Simple_repeat Simple_repeat 5 33 0 1700 159 3 14 chr9 134978078 134978373 -7293071 - AluJo SINE Alu -9 303 12 2429 54 0 19 chr9 134978417 134978731 -7292713 - AluY SINE Alu -3 308 1 1191 109 127 27 chr9 134978731 134978941 -7292503 - AluSg/x SINE Alu -7 305 71 347 263 83 15 chr9 134979767 134979900 -7291544 + MIR3 SINE MIR 17 158 -50 245 250 0 0 chr9 134980127 134980183 -7291261 - L1MC4a LINE L1 -1110 6698 6643 819 179 74 15 chr9 134980183 134980355 -7291089 + MLT1C LTR MaLR 1 161 -229 1596 158 40 13 chr9 134980355 134980653 -7290791 + AluJo SINE Alu 1 306 -6 2177 132 0 0 chr9 134980659 134980970 -7290474 + AluSx SINE Alu 1 311 -1 819 179 74 15 chr9 134980970 134981038 -7290406 + MLT1C LTR MaLR 165 253 -137 2095 102 24 0 chr9 134981039 134981332 -7290112 + AluSx SINE Alu 1 300 -12 504 302 18 6 chr9 134981467 134981636 -7289808 + MLT1C LTR MaLR 292 462 -5 203 171 0 0 chr9 134981701 134981742 -7289702 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 25766 65 7 6 chr9 134981745 134984630 -7286814 - L1PA6 LINE L1 0 6154 3274 2502 50 0 28 chr9 134984630 134984950 -7286494 - AluY SINE Alu 0 311 1 25766 65 7 6 chr9 134984950 134988207 -7283237 - L1PA6 LINE L1 -2880 3274 11 2347 101 0 0 chr9 134988215 134988512 -7282932 - AluSc SINE Alu -12 297 1 1873 134 11 7 chr9 134988640 134988917 -7282527 - AluJo SINE Alu -22 290 13 2096 112 4 0 chr9 134989017 134989295 -7282149 + AluSp SINE Alu 31 309 -4 609 306 168 3 chr9 134989326 134989623 -7281821 + L2 LINE L2 2968 3313 0 2215 127 0 0 chr9 134989627 134989919 -7281525 + AluSx SINE Alu 3 294 -18 2408 76 0 16 chr9 134990728 134991031 -7280413 + AluY SINE Alu 1 298 -13 1354 109 0 0 chr9 134991032 134991206 -7280238 + AluSg/x SINE Alu 132 305 -5 1834 158 0 32 chr9 134991832 134992143 -7279301 + AluJo SINE Alu 1 301 -11 362 299 42 78 chr9 134992661 134992996 -7278448 - L2 LINE L2 -60 3212 2890 277 24 48 0 chr9 134993291 134993333 -7278111 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 2309 38 0 48 chr9 134993333 134993626 -7277818 - AluY SINE Alu -32 279 1 936 149 6 42 chr9 134993903 134994071 -7277373 + FRAM SINE Alu 1 162 -14 560 146 95 80 chr9 134994081 134994218 -7277226 + FLAM_C SINE Alu 2 140 -3 1120 214 143 91 chr9 134994219 134994425 -7277019 - Tigger3b DNA MER2_type -2262 766 572 2364 114 0 0 chr9 134994425 134994733 -7276711 - AluSc SINE Alu -1 308 1 1120 214 143 91 chr9 134994733 134995044 -7276400 - Tigger3b DNA MER2_type -2456 572 279 1899 141 14 7 chr9 134995044 134995335 -7276109 + AluJb SINE Alu 5 297 -15 2259 119 0 7 chr9 134995335 134995638 -7275806 + AluSx SINE Alu 1 301 -11 1120 214 143 91 chr9 134995638 134995836 -7275608 - Tigger3b DNA MER2_type -2748 280 11 1535 196 52 35 chr9 134995839 134996186 -7275258 - L1M3 LINE L1 -396 5784 5432 802 138 0 0 chr9 134996186 134996302 -7275142 - AluJb SINE Alu -17 295 180 2311 101 0 0 chr9 134996330 134996616 -7274828 + AluSx SINE Alu 20 305 -7 2281 96 3 3 chr9 134996616 134996908 -7274536 + AluSc SINE Alu 1 292 -17 2217 192 26 78 chr9 134996908 134997111 -7274333 - L1M3 LINE L1 -855 5291 5079 2491 65 7 10 chr9 134997111 134997418 -7274026 + AluY SINE Alu 1 306 -5 2217 192 26 78 chr9 134997418 134997480 -7273964 - L1M3 LINE L1 -1067 5079 5015 2234 112 3 0 chr9 134997480 134997775 -7273669 - AluSx SINE Alu -14 298 3 2217 192 26 78 chr9 134997775 134998190 -7273254 - L1M3 LINE L1 -1131 5015 4645 415 188 0 0 chr9 134998218 134998287 -7273157 - AluS SINE Alu -239 70 2 1641 129 86 0 chr9 134998352 134998584 -7272860 + AluSx SINE Alu 1 252 -60 2178 97 36 0 chr9 134998610 134998889 -7272555 + AluSg SINE Alu 1 289 -21 2314 126 3 0 chr9 134998889 134999199 -7272245 + AluSq SINE Alu 1 311 -2 730 204 27 0 chr9 134999200 134999347 -7272097 - L1M3 LINE L1 -1921 4225 4075 8371 52 11 0 chr9 134999411 135000369 -7271075 + LTR5 LTR ERVK 1 969 0 755 204 0 94 chr9 135000592 135000793 -7270651 + MER87 LTR ERV1 58 239 -302 1680 234 79 54 chr9 135000852 135000943 -7270501 - LTR9 LTR ERV1 0 612 525 2387 85 13 3 chr9 135000943 135001249 -7270195 + AluSx SINE Alu 1 309 -3 1680 234 79 54 chr9 135001249 135001754 -7269690 - LTR9 LTR ERV1 -87 525 1 1609 146 0 16 chr9 135001754 135001838 -7269606 + AluJo SINE Alu 52 136 -176 2400 86 3 3 chr9 135001838 135002142 -7269302 + AluY SINE Alu 2 305 -6 1609 146 0 16 chr9 135002142 135002303 -7269141 + AluJo SINE Alu 136 293 -19 2193 112 3 16 chr9 135002305 135002442 -7269002 + AluSq SINE Alu 1 138 -175 2456 85 3 0 chr9 135002442 135002749 -7268695 + AluSp SINE Alu 1 308 -5 2193 112 3 16 chr9 135002749 135002914 -7268530 + AluSq SINE Alu 138 299 -14 2394 110 0 0 chr9 135003010 135003318 -7268126 + AluSg SINE Alu 1 308 -2 2458 97 3 0 chr9 135003329 135003638 -7267806 + AluSp SINE Alu 1 310 -3 2278 105 3 0 chr9 135003654 135003948 -7267496 + AluSq SINE Alu 1 295 -18 3158 118 24 60 chr9 135003948 135004543 -7266901 - MER50 LTR ERV1 -161 573 1 1049 126 0 0 chr9 135004590 135004725 -7266719 + AluJo SINE Alu 1 135 -177 2165 93 11 0 chr9 135004726 135005027 -7266417 + AluSx SINE Alu 1 304 0 378 212 80 118 chr9 135005093 135005220 -7266224 - Charlie7 DNA MER1_type -1565 1047 930 2629 53 0 0 chr9 135005220 135005519 -7265925 - AluY SINE Alu -12 299 1 378 212 80 118 chr9 135005519 135005603 -7265841 - Charlie7 DNA MER1_type -1682 930 844 1296 133 0 16 chr9 135005604 135005792 -7265652 + AluJb SINE Alu 1 185 -127 885 229 53 23 chr9 135005819 135006081 -7265363 - Charlie7 DNA MER1_type -1759 853 584 1581 179 31 17 chr9 135006116 135006406 -7265038 - AluJb SINE Alu -18 294 1 616 238 39 100 chr9 135006466 135006616 -7264828 - L1ME1 LINE L1 -5 6161 6034 2403 91 0 7 chr9 135006616 135006923 -7264521 - AluSx SINE Alu -7 305 1 616 238 39 100 chr9 135006923 135007053 -7264391 - L1ME1 LINE L1 -132 6034 5898 2570 53 10 3 chr9 135007053 135007356 -7264088 - AluY SINE Alu -6 305 1 1128 180 97 75 chr9 135007379 135007530 -7263914 - AluJo SINE Alu -19 293 132 2432 84 10 0 chr9 135007530 135007839 -7263605 - AluSp SINE Alu -1 312 1 1128 180 97 75 chr9 135007839 135007954 -7263490 - AluJo SINE Alu -180 132 21 21 57 0 0 chr9 135007978 135008013 -7263431 + AT_rich Low_complexity Low_complexity 1 35 0 816 189 0 0 chr9 135008013 135008145 -7263299 - FLAM_C SINE Alu -11 132 1 1235 144 0 11 chr9 135008154 135008342 -7263102 - AluSg/x SINE Alu -5 307 122 771 197 87 6 chr9 135008382 135008565 -7262879 - LTR8A LTR ERV1 -107 620 423 319 91 0 0 chr9 135008573 135008641 -7262803 - AluSp SINE Alu 0 309 242 2148 93 0 4 chr9 135008641 135008909 -7262535 - AluSp SINE Alu -46 267 1 841 162 50 71 chr9 135008925 135009084 -7262360 - LTR8 LTR ERV1 -497 194 38 2350 105 26 0 chr9 135009084 135009388 -7262056 - AluSx SINE Alu 0 312 1 841 162 50 71 chr9 135009388 135009426 -7262018 - LTR8 LTR ERV1 -653 38 1 2941 142 120 26 chr9 135009435 135010000 -7261444 + LTR35 LTR ERV1 1 618 0 1852 163 10 7 chr9 135010000 135010294 -7261150 + AluJo SINE Alu 5 299 -13 268 97 0 194 chr9 135010731 135010763 -7260681 + MLT1A1 LTR MaLR 27 39 -335 2409 87 16 10 chr9 135010763 135011073 -7260371 + AluSq SINE Alu 2 313 0 268 97 0 194 chr9 135011073 135011112 -7260332 + MLT1A1 LTR MaLR 39 84 -290 880 158 0 0 chr9 135011114 135011247 -7260197 + FLAM_C SINE Alu 1 133 -10 2146 111 4 0 chr9 135011256 135011558 -7259886 + AluSc SINE Alu 2 304 0 1103 169 0 11 chr9 135011606 135011795 -7259649 + MLT1A1 LTR MaLR 179 365 0 2366 78 7 0 chr9 135011840 135012133 -7259311 + AluY SINE Alu 1 295 -16 2403 96 0 0 chr9 135012177 135012478 -7258966 - AluSq SINE Alu -12 301 1 245 176 221 0 chr9 135012633 135012701 -7258743 + MIR SINE MIR 50 132 -130 1766 119 0 12 chr9 135012701 135012973 -7258471 - AluY SINE Alu 0 312 44 896 92 0 0 chr9 135012973 135013082 -7258362 - AluY SINE Alu -202 109 1 2296 119 10 0 chr9 135013112 135013422 -7258022 + AluSq SINE Alu 1 313 0 429 222 24 24 chr9 135013422 135013548 -7257896 + MIR SINE MIR 136 261 -1 1668 149 7 64 chr9 135013750 135013863 -7257581 + AluJb SINE Alu 17 135 -177 2563 62 0 0 chr9 135013863 135014167 -7257277 - AluY SINE Alu -7 304 1 1668 149 7 64 chr9 135014167 135014349 -7257095 + AluJb SINE Alu 135 295 -17 2472 82 0 7 chr9 135014364 135014667 -7256777 - AluSg SINE Alu -9 301 1 2263 75 4 0 chr9 135015503 135015781 -7255663 - AluSg SINE Alu -31 279 1 2740 27 0 0 chr9 135016543 135016843 -7254601 + AluY SINE Alu 1 300 -11 578 159 22 22 chr9 135016853 135016991 -7254453 + L1MA4 LINE L1 6163 6300 0 207 0 0 0 chr9 135017077 135017100 -7254344 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 373 238 38 69 chr9 135017242 135017287 -7254157 - Charlie7 DNA MER1_type -2452 160 115 2306 115 0 3 chr9 135017287 135017592 -7253852 - AluSx SINE Alu -8 304 1 373 238 38 69 chr9 135017592 135017706 -7253738 - Charlie7 DNA MER1_type -2497 115 6 784 242 49 36 chr9 135017743 135017886 -7253558 + MIR SINE MIR 3 149 -113 2456 88 7 0 chr9 135017886 135018192 -7253252 + AluSg SINE Alu 1 308 -2 784 242 49 36 chr9 135018192 135018299 -7253145 + MIR SINE MIR 149 253 -9 352 301 96 24 chr9 135018373 135018512 -7252932 + MIR SINE MIR 25 153 -109 2181 91 6 63 chr9 135018512 135018830 -7252614 + AluSx SINE Alu 1 300 -12 2417 79 0 16 chr9 135018830 135019134 -7252310 + AluSx SINE Alu 1 299 -13 352 301 96 24 chr9 135019134 135019202 -7252242 + MIR SINE MIR 152 248 -14 680 194 44 12 chr9 135019209 135019369 -7252075 + MLT1J2 LTR MaLR 1 165 -285 1610 177 3 11 chr9 135019510 135019793 -7251651 + AluJo SINE Alu 21 301 -11 2289 100 0 0 chr9 135019886 135020177 -7251267 - AluSc SINE Alu -18 291 1 180 0 0 0 chr9 135020272 135020292 -7251152 + (TG)n Simple_repeat Simple_repeat 1 20 0 1667 196 0 0 chr9 135020512 135020793 -7250651 - AluJo SINE Alu -4 308 28 2385 106 0 3 chr9 135020793 135021095 -7250349 + AluSg SINE Alu 1 301 -9 2080 141 6 10 chr9 135021470 135021783 -7249661 - AluSx SINE Alu 0 312 1 2636 176 22 24 chr9 135021830 135022389 -7249055 - L1MA8 LINE L1 -366 5925 5330 2440 94 0 0 chr9 135022389 135022688 -7248756 - AluSg SINE Alu -11 299 1 2636 176 22 24 chr9 135022688 135022753 -7248691 - L1MA8 LINE L1 -961 5330 5266 1298 120 0 0 chr9 135022762 135022929 -7248515 - AluSg/x SINE Alu -16 294 128 649 135 10 0 chr9 135022931 135023035 -7248409 + AluJo/FRAM SINE Alu 193 297 -15 2296 97 0 7 chr9 135023059 135023358 -7248086 + AluSx SINE Alu 4 300 -12 2099 116 3 30 chr9 135023358 135023660 -7247784 + AluSg SINE Alu 1 294 -16 425 221 0 0 chr9 135023660 135023755 -7247689 - L1M4 LINE L1 -866 5280 5186 233 276 133 0 chr9 135023919 135024017 -7247427 + MER117 DNA MER1_type 49 159 -38 2522 69 0 3 chr9 135024175 135024479 -7246965 - AluY SINE Alu -8 303 1 1841 140 7 0 chr9 135024494 135024765 -7246679 - AluSx SINE Alu -4 308 36 2216 119 0 0 chr9 135024772 135025067 -7246377 - AluSx SINE Alu -7 305 11 2316 93 0 23 chr9 135025403 135025705 -7245739 - AluSx SINE Alu -17 295 1 345 314 29 14 chr9 135025803 135025943 -7245501 + L2 LINE L2 2920 3061 -211 2256 98 0 61 chr9 135026355 135026681 -7244763 - AluY SINE Alu -5 306 1 1636 171 10 13 chr9 135026683 135026844 -7244600 - AluSx SINE Alu -4 298 138 2352 84 0 26 chr9 135026844 135027024 -7244420 - AluSg SINE Alu -7 303 120 261 0 0 0 chr9 135027024 135027053 -7244391 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2290 105 0 3 chr9 135027053 135027343 -7244101 - AluSx SINE Alu -23 289 1 2352 84 0 26 chr9 135027343 135027477 -7243967 - AluSg SINE Alu -188 122 1 1636 171 10 13 chr9 135027477 135027614 -7243830 - AluSx SINE Alu -164 138 1 1124 112 0 0 chr9 135027778 135027921 -7243523 - AluSp SINE Alu -24 289 147 1263 134 0 0 chr9 135027948 135028127 -7243317 + AluSp SINE Alu 131 309 -4 609 306 168 3 chr9 135028158 135028455 -7242989 + L2 LINE L2 2968 3313 0 2247 120 0 0 chr9 135028459 135028751 -7242693 + AluSx SINE Alu 3 294 -18 2408 76 0 16 chr9 135029560 135029863 -7241581 + AluY SINE Alu 1 298 -13 1354 109 0 0 chr9 135029864 135030038 -7241406 + AluSg/x SINE Alu 132 305 -5 1847 154 0 32 chr9 135030664 135030975 -7240469 + AluJo SINE Alu 1 301 -11 362 299 42 78 chr9 135031493 135031828 -7239616 - L2 LINE L2 -60 3212 2890 277 24 48 0 chr9 135032123 135032165 -7239279 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 2309 38 0 48 chr9 135032165 135032458 -7238986 - AluY SINE Alu -32 279 1 936 149 6 42 chr9 135032735 135032903 -7238541 + FRAM SINE Alu 1 162 -14 560 146 95 80 chr9 135032913 135033050 -7238394 + FLAM_C SINE Alu 2 140 -3 1120 214 143 91 chr9 135033051 135033257 -7238187 - Tigger3b DNA MER2_type -2262 766 572 2364 114 0 0 chr9 135033257 135033565 -7237879 - AluSc SINE Alu -1 308 1 1120 214 143 91 chr9 135033565 135033876 -7237568 - Tigger3b DNA MER2_type -2456 572 279 1899 141 14 7 chr9 135033876 135034167 -7237277 + AluJb SINE Alu 5 297 -15 2259 119 0 7 chr9 135034167 135034470 -7236974 + AluSx SINE Alu 1 301 -11 1120 214 143 91 chr9 135034470 135034668 -7236776 - Tigger3b DNA MER2_type -2748 280 11 1535 196 52 35 chr9 135034671 135035018 -7236426 - L1M3 LINE L1 -396 5784 5432 802 138 0 0 chr9 135035018 135035134 -7236310 - AluJb SINE Alu -17 295 180 361 119 0 34 chr9 135035254 135035313 -7236131 + AluSq/x SINE Alu 76 132 -170 1168 67 0 0 chr9 135035316 135035450 -7235994 + AluSg1 SINE Alu 1 134 -175 2280 108 0 3 chr9 135035450 135035747 -7235697 + AluSq SINE Alu 1 296 -17 339 285 179 28 chr9 135035909 135036088 -7235356 + MIR SINE MIR 53 258 -4 2519 62 0 0 chr9 135036093 135036385 -7235059 - AluY SINE Alu -19 292 1 1754 158 10 23 chr9 135036505 135036809 -7234635 - AluJo SINE Alu -12 300 1 418 219 0 102 chr9 135037077 135037161 -7234283 - L2 LINE L2 0 3313 3245 2108 85 110 90 chr9 135037161 135037385 -7234059 - MLT2A1 LTR ERVL 0 444 226 2345 61 11 0 chr9 135037385 135037693 -7233751 - AluSp SINE Alu 0 311 1 2108 85 110 90 chr9 135037693 135037902 -7233542 - MLT2A1 LTR ERVL -218 226 1 418 219 0 102 chr9 135037902 135037945 -7233499 - L2 LINE L2 -68 3245 3199 626 190 5 70 chr9 135038125 135038301 -7233143 + MER33 DNA MER1_type 51 214 -2371 1798 126 48 38 chr9 135038301 135038594 -7232850 + AluSx SINE Alu 1 296 -16 626 190 5 70 chr9 135038594 135038617 -7232827 + MER33 DNA MER1_type 214 237 -87 2245 116 6 3 chr9 135038620 135038931 -7232513 - AluSq SINE Alu 0 313 2 2243 94 0 0 chr9 135038933 135039210 -7232234 - AluSc SINE Alu -8 301 25 2187 117 3 7 chr9 135039226 135039534 -7231910 - AluSx SINE Alu -5 307 1 2234 114 0 13 chr9 135039542 135039849 -7231595 - AluSp SINE Alu -10 303 1 2212 103 27 0 chr9 135040305 135040605 -7230839 - AluSc SINE Alu -1 308 1 208 310 0 0 chr9 135040637 135040708 -7230736 + L2 LINE L2 3184 3254 -18 2601 66 0 0 chr9 135040869 135041172 -7230272 - AluY SINE Alu -4 307 5 2332 109 7 0 chr9 135041176 135041478 -7229966 - AluSx SINE Alu -8 304 1 422 293 67 18 chr9 135041501 135041534 -7229910 + MIR SINE MIR 77 107 -155 1645 183 148 18 chr9 135041534 135041981 -7229463 - MLT1D LTR MaLR 0 505 1 422 293 67 18 chr9 135041981 135042111 -7229333 + MIR SINE MIR 107 248 -14 2318 93 0 0 chr9 135042143 135042434 -7229010 - AluSx SINE Alu -21 291 1 2301 115 0 0 chr9 135042481 135042785 -7228659 - AluSg SINE Alu -1 309 6 205 29 29 29 chr9 135042815 135042850 -7228594 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2055 115 7 24 chr9 135043046 135043341 -7228103 + AluSx SINE Alu 23 312 0 312 299 158 5 chr9 135043461 135043645 -7227799 + MIR SINE MIR 32 243 -19 200 321 11 43 chr9 135044070 135044254 -7227190 + C-rich Low_complexity Low_complexity 3 180 0 23 33 0 0 chr9 135044661 135044691 -7226753 + GC_rich Low_complexity Low_complexity 1 30 0 219 231 0 77 chr9 135045945 135046023 -7225421 + MIR SINE MIR 110 181 -81 293 139 35 35 chr9 135046108 135046194 -7225250 + CT-rich Low_complexity Low_complexity 3 88 0 2388 107 7 0 chr9 135046198 135046508 -7224936 - AluSx SINE Alu 0 312 1 1294 207 14 4 chr9 135047727 135048002 -7223442 - L1M4 LINE L1 -404 5770 5493 742 194 0 99 chr9 135048002 135048193 -7223251 - MER87 LTR ERV1 -312 229 58 1287 114 0 0 chr9 135048295 135048461 -7222983 + AluSg/x SINE Alu 132 297 -13 2235 142 0 0 chr9 135048492 135048802 -7222642 + AluSx SINE Alu 2 311 -1 430 271 49 0 chr9 135049204 135049326 -7222118 - MER20B DNA MER1_type -613 170 43 202 240 20 0 chr9 135049586 135049636 -7221808 + L2 LINE L2 3262 3312 -1 2398 70 7 0 chr9 135049780 135050066 -7221378 - AluY SINE Alu -23 288 1 1070 141 0 0 chr9 135050348 135050504 -7220940 - AluSg/x SINE Alu -2 308 153 333 224 0 0 chr9 135050611 135050687 -7220757 - MADE1 DNA Mariner -4 76 1 2300 94 0 7 chr9 135050692 135050990 -7220454 - AluSq SINE Alu -17 296 1 1863 167 7 14 chr9 135051124 135051417 -7220027 - AluSg SINE Alu -19 291 1 2215 118 0 7 chr9 135051426 135051732 -7219712 - AluSx SINE Alu -8 304 1 245 176 221 0 chr9 135051887 135051955 -7219489 + MIR SINE MIR 50 132 -130 2266 95 0 11 chr9 135051955 135052263 -7219181 - AluSg SINE Alu 0 305 1 1909 120 55 0 chr9 135052266 135052541 -7218903 - AluSx SINE Alu -5 307 18 1075 149 36 22 chr9 135052575 135052797 -7218647 - L1MB3 LINE L1 -199 5984 5760 2108 137 3 13 chr9 135053643 135053957 -7217487 - AluSx SINE Alu -1 311 1 24 32 0 0 chr9 135053962 135053993 -7217451 + AT_rich Low_complexity Low_complexity 1 31 0 718 171 0 50 chr9 135054243 135054383 -7217061 - FLAM_C SINE Alu 0 133 1 2169 121 20 7 chr9 135054519 135054824 -7216620 - AluSq SINE Alu -4 309 1 262 227 91 27 chr9 135055052 135055162 -7216282 - L1MB3 LINE L1 -1989 5819 5703 491 306 73 23 chr9 135056152 135056371 -7215073 + MIR SINE MIR 31 260 -2 259 331 33 52 chr9 135056785 135056966 -7214478 + MIR SINE MIR 9 185 -72 277 216 59 39 chr9 135058111 135058213 -7213231 + MIR SINE MIR 81 184 -78 266 352 73 17 chr9 135058605 135058784 -7212660 + L1MC/D LINE L1 5649 5837 -1971 2312 104 3 3 chr9 135059022 135059319 -7212125 - AluSp SINE Alu -16 297 1 2412 91 3 0 chr9 135059321 135059617 -7211827 - AluSp SINE Alu -11 302 6 1284 77 0 30 chr9 135059617 135059785 -7211659 - AluSq SINE Alu -150 163 1 268 286 48 71 chr9 135060833 135060959 -7210485 + MIR SINE MIR 32 154 -108 340 286 125 18 chr9 135061120 135061288 -7210156 - L1M4 LINE L1 -2998 3148 2963 2019 92 0 4 chr9 135061294 135061555 -7209889 + AluSx SINE Alu 21 280 -32 2156 120 33 0 chr9 135062018 135062372 -7209072 - AluSx SINE Alu 0 364 1 209 251 67 97 chr9 135062466 135062565 -7208879 + L2 LINE L2 3070 3162 -110 667 205 124 62 chr9 135062565 135062775 -7208669 + MER58A DNA MER1_type 1 223 -1 209 251 67 97 chr9 135062775 135062870 -7208574 + L2 LINE L2 3162 3258 -14 213 265 15 0 chr9 135063560 135063628 -7207816 + MIR SINE MIR 46 114 -148 2383 97 0 6 chr9 135063631 135063942 -7207502 - AluSc SINE Alu 0 309 1 223 296 130 9 chr9 135063970 135064085 -7207359 + MIR SINE MIR 113 241 -21 304 233 82 0 chr9 135065226 135065299 -7206145 - MER58C DNA MER1_type -10 205 127 1889 148 0 24 chr9 135065530 135065828 -7205616 - AluSx SINE Alu -19 293 3 223 229 114 0 chr9 135065888 135065958 -7205486 - MIR3 SINE MIR -39 169 92 2172 110 4 0 chr9 135065993 135066298 -7205146 + AluSx SINE Alu 1 306 0 218 234 0 0 chr9 135066414 135066461 -7204983 + L2 LINE L2 3226 3272 0 2190 96 0 60 chr9 135066560 135066874 -7204570 - AluSx SINE Alu -17 295 1 2209 84 7 7 chr9 135067068 135067376 -7204068 - AluY SINE Alu 0 308 1 2384 75 0 0 chr9 135067438 135067731 -7203713 - AluY SINE Alu -18 293 1 24 53 0 0 chr9 135067985 135068023 -7203421 + GC_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 135068239 135068260 -7203184 + GC_rich Low_complexity Low_complexity 1 21 0 30 0 0 75 chr9 135068968 135069021 -7202423 + AT_rich Low_complexity Low_complexity 1 49 0 60 45 0 0 chr9 135069065 135069153 -7202291 + AT_rich Low_complexity Low_complexity 1 88 0 25 0 0 0 chr9 135069204 135069229 -7202215 + AT_rich Low_complexity Low_complexity 1 25 0 206 235 44 22 chr9 135069266 135069402 -7202042 + (TAA)n Simple_repeat Simple_repeat 3 141 0 * 260 141 50 40 chr9 135069307 135069406 -7202038 + (TATAA)n Simple_repeat Simple_repeat 4 103 0 814 254 5 33 chr9 135069551 135069764 -7201680 + AluSg/x SINE Alu 105 311 -1 430 271 49 0 chr9 135070166 135070288 -7201156 - MER20B DNA MER1_type -613 170 43 202 240 20 0 chr9 135070548 135070598 -7200846 + L2 LINE L2 3262 3312 -1 2464 59 7 0 chr9 135070741 135071027 -7200417 - AluY SINE Alu -23 288 1 315 0 0 0 chr9 135071042 135071077 -7200367 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 210 143 0 0 chr9 135071823 135071858 -7199586 + (T)n Simple_repeat Simple_repeat 1 35 0 238 193 0 0 chr9 135072274 135072331 -7199113 + (TA)n Simple_repeat Simple_repeat 1 57 0 399 89 0 0 chr9 135072332 135072388 -7199056 + (TG)n Simple_repeat Simple_repeat 2 57 0 2207 119 0 0 chr9 135072388 135072674 -7198770 - AluSx SINE Alu -26 286 1 2400 89 0 13 chr9 135072734 135072900 -7198544 - AluSp SINE Alu -15 298 136 2444 97 0 0 chr9 135072900 135073211 -7198233 - AluY SINE Alu 0 311 1 2400 89 0 13 chr9 135073211 135073346 -7198098 - AluSp SINE Alu -177 136 1 2546 53 0 13 chr9 135073367 135073667 -7197777 - AluY SINE Alu -15 296 1 33 25 0 0 chr9 135073677 135073717 -7197727 + AT_rich Low_complexity Low_complexity 1 40 0 1033 129 0 0 chr9 135073734 135073873 -7197571 - AluJo SINE Alu -171 141 3 354 350 60 39 chr9 135075743 135075977 -7195467 + MIR SINE MIR 23 261 -1 258 270 128 88 chr9 135076636 135076796 -7194648 + L1ME4a LINE L1 5541 5693 -428 2390 105 0 0 chr9 135076796 135077101 -7194343 + AluSx SINE Alu 1 305 -7 258 270 128 88 chr9 135077101 135077113 -7194331 + L1ME4a LINE L1 5693 5703 -418 2209 124 3 10 chr9 135077113 135077427 -7194017 + AluSx SINE Alu 1 312 0 258 270 128 88 chr9 135077427 135077808 -7193636 + L1ME4a LINE L1 5703 6117 -4 913 196 0 12 chr9 135077998 135078166 -7193278 + AluJb SINE Alu 137 302 -10 498 270 8 0 chr9 135078916 135079042 -7192402 + MER103 DNA DNA 38 164 -2 190 273 164 36 chr9 135080446 135080556 -7190888 + MIR SINE MIR 21 107 -101 852 191 0 0 chr9 135081557 135081693 -7189751 - AluJb SINE Alu -57 255 120 555 121 33 0 chr9 135081872 135081963 -7189481 - AluSg/x SINE Alu -4 306 213 29 47 0 0 chr9 135081973 135082016 -7189428 + AT_rich Low_complexity Low_complexity 1 43 0 855 265 137 12 chr9 135082046 135082389 -7189055 + L1MC4a LINE L1 5545 5930 -1878 1820 165 0 7 chr9 135082405 135082690 -7188754 + AluJb SINE Alu 19 301 -11 246 250 139 0 chr9 135082819 135082927 -7188517 + L1MC4a LINE L1 6044 6166 -1642 671 217 0 21 chr9 135082980 135083123 -7188321 + FLAM_A SINE Alu 2 141 -1 1464 170 0 0 chr9 135083688 135083917 -7187527 - AluJb SINE Alu 0 312 84 2375 63 0 11 chr9 135084666 135085003 -7186441 - AluY SINE Alu 0 334 1 2026 127 17 7 chr9 135085005 135085297 -7186147 - AluJb SINE Alu -16 296 2 2299 82 7 0 chr9 135086721 135087027 -7184417 - AluSp SINE Alu -5 308 1 363 315 30 36 chr9 135087089 135087254 -7184190 - MIR3 SINE MIR -3 205 42 373 115 0 0 chr9 135089762 135089814 -7181630 + MER66B LTR ERV1 295 346 -140 2210 96 17 3 chr9 135089837 135090139 -7181305 + AluSc SINE Alu 1 306 -3 603 221 96 0 chr9 135090142 135090278 -7181166 - FAM SINE Alu -26 159 11 619 226 75 26 chr9 135090359 135090915 -7180529 - L1ME2 LINE L1 0 6098 5439 532 162 0 30 chr9 135090918 135091017 -7180427 - FRAM SINE Alu -5 171 76 608 208 0 0 chr9 135091018 135091167 -7180277 - L1ME2 LINE L1 -674 5422 5274 3167 228 123 54 chr9 135091202 135091836 -7179608 - L1ME2 LINE L1 -884 5196 4607 2211 99 3 0 chr9 135091836 135092129 -7179315 - AluSg SINE Alu -12 298 5 3167 228 123 54 chr9 135092129 135092162 -7179282 - L1ME2 LINE L1 -1473 4607 4578 1997 143 0 0 chr9 135092162 135092456 -7178988 - AluSx SINE Alu -18 294 1 3167 228 123 54 chr9 135092456 135092687 -7178757 - L1ME2 LINE L1 -1502 4578 4364 2219 88 3 0 chr9 135092687 135092982 -7178462 + AluY SINE Alu 1 296 -15 3167 228 123 54 chr9 135092982 135093662 -7177782 - L1ME2 LINE L1 -1716 4364 3507 870 175 11 23 chr9 135093712 135093889 -7177555 - FRAM SINE Alu -8 168 1 770 250 58 16 chr9 135093891 135094271 -7177173 - L1ME2 LINE L1 -2600 3480 3085 516 249 23 59 chr9 135094324 135094629 -7176815 - L1ME2 LINE L1 -3326 2754 2461 1196 179 28 4 chr9 135094792 135095043 -7176401 - L1MB7 LINE L1 -185 5999 5743 365 353 19 0 chr9 135095113 135095269 -7176175 - L1ME2 LINE L1 -5900 170 12 2332 81 0 0 chr9 135095389 135095684 -7175760 - AluSg SINE Alu -5 305 11 701 124 0 0 chr9 135095684 135095781 -7175663 - AluSg SINE Alu -212 98 2 1410 177 11 8 chr9 135096268 135096534 -7174910 - AluJb SINE Alu -3 309 43 312 203 8 102 chr9 135096540 135096591 -7174853 + MER103 DNA DNA 55 90 -76 2160 125 0 0 chr9 135096591 135096894 -7174550 + AluSx SINE Alu 1 303 -9 312 203 8 102 chr9 135096894 135096960 -7174484 + MER103 DNA DNA 90 161 -5 981 87 0 0 chr9 135097157 135097306 -7174138 - LTR10C LTR ERV1 -440 151 3 924 161 13 0 chr9 135097306 135097461 -7173983 + FRAM SINE Alu 19 175 -1 425 224 0 118 chr9 135097461 135097622 -7173822 - L1M4 LINE L1 -1460 4686 4545 195 42 0 0 chr9 135097754 135097778 -7173666 + (CACG)n Simple_repeat Simple_repeat 4 27 0 458 300 182 0 chr9 135097790 135097960 -7173484 + L1ME3A LINE L1 5702 5902 -268 1455 192 48 24 chr9 135098139 135098431 -7173013 + AluJo SINE Alu 1 299 -13 2072 81 14 24 chr9 135098603 135098900 -7172544 + AluY SINE Alu 1 294 -17 1002 156 19 0 chr9 135098908 135099062 -7172382 + AluJb SINE Alu 132 288 -24 1133 89 106 135 chr9 135100614 135100754 -7170690 + MER30 DNA MER1_type 1 133 -97 1852 134 7 13 chr9 135100754 135101052 -7170392 - AluSq SINE Alu -15 298 3 1133 89 106 135 chr9 135101052 135101148 -7170296 + MER30 DNA MER1_type 133 230 0 312 288 19 5 chr9 135104347 135104559 -7166885 + CT-rich Low_complexity Low_complexity 1 215 0 1160 148 8 41 chr9 135104765 135105009 -7166435 - AluSq SINE Alu -75 238 3 471 87 163 76 chr9 135105013 135105105 -7166339 + MER30 DNA MER1_type 131 230 0 672 133 141 31 chr9 135105666 135105794 -7165650 - FLAM_C SINE Alu -1 142 1 1172 160 10 5 chr9 135105844 135106038 -7165406 - AluJo SINE Alu -108 204 10 652 176 109 0 chr9 135106076 135106195 -7165249 + FLAM_C SINE Alu 2 133 0 1517 251 127 20 chr9 135106265 135106863 -7164581 - L1MC4 LINE L1 -143 7899 7238 855 226 118 21 chr9 135106910 135107189 -7164255 - L1MC4 LINE L1 -1065 6977 6672 259 382 8 15 chr9 135107313 135107444 -7164000 + L1ME LINE L1 5569 5698 -423 237 297 50 20 chr9 135107723 135107824 -7163620 - L1ME2 LINE L1 -9 6155 6052 1220 156 51 79 chr9 135108012 135108327 -7163117 - AluJo SINE Alu -1 311 6 2304 90 0 0 chr9 135108341 135108641 -7162803 - AluSx SINE Alu -12 300 1 335 281 123 39 chr9 135108845 135109048 -7162396 - MIR SINE MIR -20 242 23 200 173 58 19 chr9 135109601 135109653 -7161791 + MIR SINE MIR 8 61 -201 744 92 176 35 chr9 135109662 135109804 -7161640 - L1PA16 LINE L1 0 6166 6005 206 355 6 27 chr9 135110188 135110371 -7161073 + CT-rich Low_complexity Low_complexity 2 180 0 209 292 0 0 chr9 135110473 135110538 -7160906 + T-rich Low_complexity Low_complexity 1 65 0 1985 113 0 0 chr9 135110700 135110975 -7160469 - AluSx SINE Alu -35 277 3 385 319 57 0 chr9 135111257 135111414 -7160030 - MIR SINE MIR -17 245 80 1912 104 16 62 chr9 135111577 135111748 -7159696 - AluSx SINE Alu -17 295 143 2419 66 0 0 chr9 135111748 135112050 -7159394 - AluY SINE Alu -6 305 4 1912 104 16 62 chr9 135112050 135112187 -7159257 - AluSx SINE Alu -169 143 1 451 304 70 0 chr9 135112215 135112386 -7159058 + MIR SINE MIR 44 226 -36 244 318 28 37 chr9 135113215 135113322 -7158122 + MIR SINE MIR 59 164 -98 34 24 0 0 chr9 135113390 135113431 -7158013 + AT_rich Low_complexity Low_complexity 1 41 0 2253 77 0 7 chr9 135114011 135114309 -7157135 + AluSx SINE Alu 2 297 -15 588 252 125 29 chr9 135114309 135114622 -7156822 - L1M4 LINE L1 -1817 4329 3987 519 114 0 0 chr9 135114735 135114805 -7156639 + AluSg/x SINE Alu 70 139 -171 33 25 0 0 chr9 135114822 135114862 -7156582 + AT_rich Low_complexity Low_complexity 1 40 0 2402 53 0 13 chr9 135114872 135115172 -7156272 + AluY SINE Alu 1 296 -15 1065 76 0 0 chr9 135115193 135115325 -7156119 + AluSp SINE Alu 1 132 -181 2392 75 0 0 chr9 135115328 135115635 -7155809 + AluY SINE Alu 1 307 -4 1295 233 22 13 chr9 135115636 135115949 -7155495 + MER74B LTR ERVL 213 528 -94 1470 115 0 14 chr9 135116540 135116758 -7154686 - AluSg/x SINE Alu -13 299 85 309 231 0 13 chr9 135116758 135116836 -7154608 - L1MC1 LINE L1 -58 6275 6199 1031 186 0 0 chr9 135116980 135117168 -7154276 - AluJb SINE Alu -4 308 121 299 143 0 0 chr9 135117190 135117232 -7154212 - AluSc SINE Alu -51 248 207 368 311 98 38 chr9 135117334 135117569 -7153875 - L1MEd LINE L1 -5626 493 245 206 167 21 0 chr9 135118589 135118637 -7152807 + T-rich Low_complexity Low_complexity 2 50 0 192 40 0 0 chr9 135118657 135118682 -7152762 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 200 161 36 36 chr9 135127039 135127095 -7144349 + T-rich Low_complexity Low_complexity 2 57 0 337 305 110 0 chr9 135127804 135127958 -7143486 + MIR SINE MIR 59 229 -33 1587 166 24 24 chr9 135128169 135128336 -7143108 - AluJo SINE Alu -17 295 129 194 0 39 0 chr9 135128336 135128362 -7143082 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1587 166 24 24 chr9 135128362 135128376 -7143068 - AluJo SINE Alu -183 129 116 2174 108 0 0 chr9 135128376 135128672 -7142772 + AluSx SINE Alu 1 296 -16 1587 166 24 24 chr9 135128672 135128784 -7142660 - AluJo SINE Alu -195 117 1 464 257 22 15 chr9 135129234 135129370 -7142074 + MIR SINE MIR 69 205 -57 2214 94 3 3 chr9 135129372 135129679 -7141765 + AluSx SINE Alu 1 307 -5 745 126 0 0 chr9 135130077 135130188 -7141256 - L1MC1 LINE L1 -24 6309 6199 1230 210 16 64 chr9 135130340 135130654 -7140790 - AluJb SINE Alu -2 300 2 249 33 0 0 chr9 135130654 135130684 -7140760 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2003 72 8 4 chr9 135130684 135130946 -7140498 - AluSq SINE Alu -50 263 1 315 274 0 0 chr9 135130948 135131021 -7140423 + MLT1B LTR MaLR 315 387 -3 484 208 32 0 chr9 135131128 135131253 -7140191 - L1MC4 LINE L1 -125 7917 7789 1427 129 0 18 chr9 135131355 135131580 -7139864 + AluSg/x SINE Alu 77 297 -13 1413 237 22 25 chr9 135132171 135132485 -7138959 - MER74B LTR ERVL -94 528 214 2505 59 0 0 chr9 135132485 135132792 -7138652 - AluY SINE Alu -4 307 1 1413 237 22 25 chr9 135132792 135132844 -7138600 - MER74B LTR ERVL -408 214 163 2246 89 0 0 chr9 135132844 135133147 -7138297 - AluY SINE Alu -8 303 1 24 53 0 0 chr9 135133401 135133439 -7138005 + GC_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 135133655 135133676 -7137768 + GC_rich Low_complexity Low_complexity 1 21 0 1861 153 28 0 chr9 135136808 135137095 -7134349 - AluSx SINE Alu -17 295 1 1903 157 0 10 chr9 135137095 135137400 -7134044 - AluJo SINE Alu -10 302 1 1660 169 0 32 chr9 135137645 135137959 -7133485 - AluJb SINE Alu -8 304 1 1773 156 21 0 chr9 135139222 135139504 -7131940 + AluJb SINE Alu 1 288 -24 393 301 72 21 chr9 135140315 135140508 -7130936 + MER112 DNA MER1_type 17 219 -41 860 164 0 8 chr9 135143007 135143141 -7128303 - FLAM_C SINE Alu 0 133 1 755 157 0 0 chr9 135143380 135143501 -7127943 + FLAM_C SINE Alu 15 135 -8 2003 117 3 3 chr9 135143853 135144135 -7127309 + AluSx SINE Alu 1 282 -30 205 244 0 0 chr9 135144387 135144428 -7127016 - L2 LINE L2 -7 3306 3266 392 286 34 0 chr9 135145087 135145206 -7126238 + MIR3 SINE MIR 85 207 -1 1129 147 29 170 chr9 135147422 135147763 -7123681 + AluJo SINE Alu 6 298 -14 2188 104 0 3 chr9 135150025 135150322 -7121122 - AluSx SINE Alu -16 296 1 189 269 87 29 chr9 135150343 135150447 -7120997 - L2 LINE L2 0 3313 3204 225 347 102 6 chr9 135150526 135150702 -7120742 - L2 LINE L2 -264 3049 2857 239 353 8 15 chr9 135150811 135150944 -7120500 - L2 LINE L2 -728 2586 2455 197 304 14 0 chr9 135151169 135151238 -7120206 - L2 LINE L2 -1317 1997 1928 2244 119 0 0 chr9 135152084 135152396 -7119048 + AluSx SINE Alu 1 312 0 198 264 161 0 chr9 135152713 135152800 -7118644 - L2 LINE L2 -1087 2227 2127 858 140 0 22 chr9 135152985 135153121 -7118323 + FLAM_C SINE Alu 1 133 0 390 336 86 16 chr9 135153831 135154075 -7117369 - MIR SINE MIR 0 262 2 1585 108 0 9 chr9 135154192 135154415 -7117029 + AluSq SINE Alu 2 222 -91 871 100 8 0 chr9 135155490 135155610 -7115834 + AluSg/x SINE Alu 163 283 -26 384 22 0 0 chr9 135155610 135155655 -7115789 + (CA)n Simple_repeat Simple_repeat 2 46 0 2540 67 0 0 chr9 135157777 135158090 -7113354 - AluSq SINE Alu 0 313 1 2217 113 6 3 chr9 135158096 135158407 -7113037 - AluSx SINE Alu 0 312 1 189 0 0 0 chr9 135159146 135159167 -7112277 + (T)n Simple_repeat Simple_repeat 1 21 0 261 288 0 0 chr9 135160203 135160269 -7111175 - L2 LINE L2 -6 3307 3242 1672 159 24 21 chr9 135160283 135160573 -7110871 + AluJb SINE Alu 5 295 -17 2247 102 0 3 chr9 135160576 135160880 -7110564 + AluSx SINE Alu 1 303 -9 2350 87 0 0 chr9 135160882 135161191 -7110253 + AluY SINE Alu 3 311 0 444 275 106 23 chr9 135161355 135161573 -7109871 - L1ME4a LINE L1 -273 5848 5613 1752 153 0 61 chr9 135161659 135161889 -7109555 - AluJb SINE Alu -5 307 101 2194 117 3 0 chr9 135161889 135162198 -7109246 - AluSx SINE Alu 0 312 3 1752 153 0 61 chr9 135162198 135162293 -7109151 - AluJb SINE Alu -211 101 2 1008 88 0 0 chr9 135162534 135162670 -7108774 - AluSp/q SINE Alu -3 310 175 1233 113 82 0 chr9 135162758 135162953 -7108491 - L1MB3 LINE L1 -7 6176 5966 1685 127 124 4 chr9 135162958 135163233 -7108211 - AluSx SINE Alu -4 308 1 2431 62 10 0 chr9 135163236 135163540 -7107904 - AluY SINE Alu -4 307 1 1497 192 48 24 chr9 135163712 135164004 -7107440 - AluJo SINE Alu -13 299 1 343 217 20 0 chr9 135164183 135164261 -7107183 - L1ME3A LINE L1 -262 5902 5821 195 42 0 0 chr9 135164503 135164527 -7106917 + (CGTG)n Simple_repeat Simple_repeat 4 27 0 303 248 99 10 chr9 135164532 135164633 -7106811 - L1ME3A LINE L1 -506 5656 5547 419 217 0 118 chr9 135164659 135164820 -7106624 + L1M4 LINE L1 4545 4686 -1460 1635 165 43 16 chr9 135164820 135164973 -7106471 - AluJo SINE Alu -1 311 164 4644 61 22 0 chr9 135164973 135165551 -7105893 + LTR10C LTR ERV1 1 591 0 1635 165 43 16 chr9 135165551 135165700 -7105744 - AluJo SINE Alu -148 164 1 2168 92 7 3 chr9 135165710 135166005 -7105439 - AluSq SINE Alu -17 296 1 840 281 111 11 chr9 135166006 135166482 -7104962 + L1M4 LINE L1 4676 5199 -947 323 310 63 82 chr9 135166533 135166609 -7104835 - HAL1 LINE L1 -604 1903 1827 2138 112 3 3 chr9 135166609 135166905 -7104539 - AluSx SINE Alu -16 296 1 323 310 63 82 chr9 135166905 135166986 -7104458 - HAL1 LINE L1 -680 1827 1749 1920 119 0 7 chr9 135167026 135167304 -7104140 - AluSx SINE Alu -10 302 27 683 273 74 48 chr9 135167600 135168058 -7103386 - HAL1 LINE L1 -846 1661 1192 2249 101 3 3 chr9 135168136 135168442 -7103002 - AluSg SINE Alu -4 306 1 1662 164 104 5 chr9 135168467 135168851 -7102593 - L1MC3 LINE L1 -16 7769 7348 403 284 82 53 chr9 135168851 135169059 -7102385 - HAL1 LINE L1 -1421 1086 873 564 305 135 51 chr9 135169217 135169985 -7101459 - HAL1 LINE L1 -1511 996 103 216 386 7 35 chr9 135171900 135172045 -7099399 - MIR SINE MIR -2 260 120 527 128 163 0 chr9 135172377 135172463 -7098981 - AluSc SINE Alu -16 293 194 1130 96 0 0 chr9 135172464 135172610 -7098834 - AluSq/x SINE Alu -166 146 1 799 198 28 0 chr9 135172616 135172793 -7098651 - L1MB8 LINE L1 -311 5867 5686 2103 117 0 7 chr9 135172930 135173229 -7098215 - AluSx SINE Alu -15 297 1 395 263 119 29 chr9 135173246 135173492 -7097952 - L1MDa LINE L1 -5145 938 678 2417 63 7 0 chr9 135173590 135173893 -7097551 - AluY SINE Alu -6 305 1 1973 118 3 20 chr9 135174305 135174601 -7096843 - AluSq SINE Alu -12 301 11 635 317 33 59 chr9 135174688 135174803 -7096641 - L1M4 LINE L1 -1494 4652 4535 1787 148 0 30 chr9 135174803 135175100 -7096344 + AluJo SINE Alu 1 288 -24 635 317 33 59 chr9 135175100 135175287 -7096157 - L1M4 LINE L1 -1611 4535 4358 943 200 6 0 chr9 135175292 135175457 -7095987 + FRAM SINE Alu 1 166 0 264 294 53 93 chr9 135175609 135175809 -7095635 - L1M4 LINE L1 -1981 4165 3958 1555 146 41 4 chr9 135175809 135176077 -7095367 + AluJb SINE Alu 1 278 -34 264 294 53 93 chr9 135176077 135176105 -7095339 - L1M4 LINE L1 -2188 3958 3930 1674 355 0 0 chr9 135176105 135176423 -7095021 + AluYb8 SINE Alu 1 318 0 264 294 53 93 chr9 135176423 135176516 -7094928 - L1M4 LINE L1 -2216 3930 3856 230 182 15 30 chr9 135176767 135176833 -7094611 - MLT1J1 LTR MaLR -363 83 19 265 327 70 14 chr9 135176860 135177074 -7094370 - L1M4 LINE L1 -2293 3853 3628 1094 122 0 0 chr9 135177077 135177233 -7094211 - AluSg/x SINE Alu -11 301 146 2160 76 28 0 chr9 135177249 135177538 -7093906 - AluSx SINE Alu -15 297 1 412 350 25 0 chr9 135177618 135177775 -7093669 - MIR SINE MIR -60 202 42 206 280 40 13 chr9 135178457 135178532 -7092912 - MIR SINE MIR -130 132 56 1736 144 26 52 chr9 135183566 135183653 -7087791 + AluJo SINE Alu 1 89 -223 2103 89 9 74 chr9 135183653 135183978 -7087466 + AluSq SINE Alu 1 304 -9 1736 144 26 52 chr9 135183978 135184195 -7087249 + AluJo SINE Alu 89 297 -15 1894 123 0 44 chr9 135184197 135184490 -7086954 + AluSx SINE Alu 1 280 -32 186 71 0 0 chr9 135184490 135184518 -7086926 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 312 250 21 21 chr9 135184777 135184873 -7086571 - MER103 DNA DNA -48 118 23 201 191 24 0 chr9 135184977 135185019 -7086425 - MER5B DNA MER1_type -135 43 1 23 0 0 0 chr9 135185197 135185220 -7086224 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr9 135185498 135185527 -7085917 + (CAGGA)n Simple_repeat Simple_repeat 1 29 0 203 222 19 0 chr9 135186738 135186792 -7084652 + L2 LINE L2 3191 3245 -27 209 268 61 24 chr9 135186957 135187039 -7084405 - MIR3 SINE MIR -117 91 7 1475 175 49 7 chr9 135187984 135188269 -7083175 - AluJo SINE Alu -12 300 4 252 0 0 0 chr9 135188719 135188747 -7082697 + (CA)n Simple_repeat Simple_repeat 2 29 0 183 23 10 0 chr9 135188771 135188839 -7082605 + (CA)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr9 135188905 135188925 -7082519 + (CA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr9 135188987 135189007 -7082437 + (CA)n Simple_repeat Simple_repeat 2 21 0 201 183 0 0 chr9 135189071 135189131 -7082313 + (CA)n Simple_repeat Simple_repeat 2 61 0 198 0 0 0 chr9 135189257 135189279 -7082165 + (CA)n Simple_repeat Simple_repeat 2 23 0 216 0 0 0 chr9 135189303 135189327 -7082117 + (CA)n Simple_repeat Simple_repeat 2 25 0 252 0 0 0 chr9 135189351 135189379 -7082065 + (CA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr9 135189479 135189499 -7081945 + (CA)n Simple_repeat Simple_repeat 2 21 0 198 0 0 0 chr9 135189561 135189583 -7081861 + (CA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr9 135189645 135189667 -7081777 + (CA)n Simple_repeat Simple_repeat 2 23 0 216 293 71 0 chr9 135191534 135191633 -7079811 - L2 LINE L2 -7 3265 3160 280 250 88 0 chr9 135193200 135193280 -7078164 + MIR SINE MIR 65 151 -57 184 320 58 10 chr9 135194228 135194331 -7077113 - MIR SINE MIR -148 114 7 369 287 40 40 chr9 135194748 135194898 -7076546 + MER117 DNA MER1_type 1 150 -47 1858 136 29 26 chr9 135195072 135195382 -7076062 - AluSx SINE Alu -1 311 1 245 395 68 6 chr9 135196570 135196732 -7074712 - MIR SINE MIR -45 217 46 195 272 19 48 chr9 135197587 135197690 -7073754 - L2 LINE L2 -1820 1494 1395 619 173 36 0 chr9 135200056 135200166 -7071278 - FLAM_C SINE Alu -7 136 23 254 318 39 0 chr9 135200786 135200912 -7070532 + MIR3 SINE MIR 49 183 -25 216 263 48 146 chr9 135201059 135201154 -7070290 - L2 LINE L2 -40 3232 3129 2246 110 0 0 chr9 135201154 135201462 -7069982 - AluSg SINE Alu -2 308 1 1681 182 14 0 chr9 135201464 135201760 -7069684 - AluJb SINE Alu -12 300 1 216 263 48 146 chr9 135201760 135201977 -7069467 - L2 LINE L2 -144 3128 2948 2216 88 7 3 chr9 135202175 135202471 -7068973 + AluSx SINE Alu 1 297 -15 440 215 0 74 chr9 135202589 135202724 -7068720 + AluSc SINE Alu 171 295 -14 2208 81 0 59 chr9 135203466 135203788 -7067656 + AluSc SINE Alu 1 303 -6 295 226 57 19 chr9 135204103 135204209 -7067235 + L1ME4a LINE L1 6011 6120 -1 1867 173 0 3 chr9 135204216 135204529 -7066915 + AluJo SINE Alu 1 312 0 354 294 46 0 chr9 135205100 135205209 -7066235 - MIR SINE MIR -102 160 47 316 238 0 125 chr9 135205330 135205498 -7065946 + L1MC4 LINE L1 7895 8041 -1 324 286 0 42 chr9 135205504 135205623 -7065821 + L1MC4 LINE L1 7928 8041 -1 1495 141 43 86 chr9 135205631 135205770 -7065674 + AluJb SINE Alu 3 146 -166 1666 120 87 14 chr9 135205770 135206046 -7065398 + AluSx SINE Alu 1 296 -16 1495 141 43 86 chr9 135206046 135206210 -7065234 + AluJb SINE Alu 146 293 -19 540 284 91 4 chr9 135206226 135206469 -7064975 - L2 LINE L2 -1485 1829 1566 1116 252 46 30 chr9 135206986 135207386 -7064058 - L1ME3A LINE L1 -1 6169 5742 230 315 148 0 chr9 135207389 135207497 -7063947 - L1ME3A LINE L1 -459 5711 5588 465 253 71 11 chr9 135207507 135207689 -7063755 - L1ME3A LINE L1 -624 5540 5348 309 223 75 21 chr9 135208166 135208260 -7063184 + HAL1b LINE L1 1247 1345 -3 2436 54 0 0 chr9 135208480 135208776 -7062668 + AluY SINE Alu 1 296 -15 414 318 109 25 chr9 135208874 135209075 -7062369 - MIR SINE MIR 0 262 45 1049 106 0 0 chr9 135209079 135209220 -7062224 + AluJb SINE Alu 1 141 -171 23 33 0 0 chr9 135209240 135209270 -7062174 + AT_rich Low_complexity Low_complexity 1 30 0 902 291 100 24 chr9 135210302 135210752 -7060692 + L1ME3 LINE L1 5483 5966 -196 406 290 172 0 chr9 135210871 135211040 -7060404 - MER3 DNA MER1_type 0 209 12 282 56 0 0 chr9 135211332 135211368 -7060076 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 223 228 38 152 chr9 135212487 135212645 -7058799 - MIR SINE MIR -16 246 107 1261 57 0 6 chr9 135212711 135212869 -7058575 + AluY SINE Alu 1 157 -154 851 123 25 0 chr9 135212869 135212991 -7058453 - AluY SINE Alu -54 257 133 360 305 11 0 chr9 135213779 135213874 -7057570 - L2 LINE L2 -1 3271 3176 1711 118 81 4 chr9 135213897 135214169 -7057275 - AluJo SINE Alu -19 293 1 3787 171 61 25 chr9 135214291 135215192 -7056252 - L1MB8 LINE L1 -6 6172 5240 1167 207 141 16 chr9 135215192 135215497 -7055947 - MER2 DNA MER2_type -1 343 1 3787 171 61 25 chr9 135215497 135215514 -7055930 - L1MB8 LINE L1 -938 5240 5225 3202 130 97 68 chr9 135215515 135216184 -7055260 + Tigger3b DNA MER2_type 2 697 -2331 945 212 6 0 chr9 135216184 135216349 -7055095 + FRAM SINE Alu 1 166 0 3202 130 97 68 chr9 135216349 135216418 -7055026 + Tigger3b DNA MER2_type 697 762 -469 261 0 0 0 chr9 135216786 135216815 -7054629 + (TG)n Simple_repeat Simple_repeat 1 29 0 231 114 0 0 chr9 135217644 135217679 -7053765 + (T)n Simple_repeat Simple_repeat 1 35 0 1736 183 0 0 chr9 135217692 135217987 -7053457 + AluJb SINE Alu 1 295 -17 1559 156 91 4 chr9 135218549 135218825 -7052619 - AluJo SINE Alu -12 300 1 339 217 9 75 chr9 135219967 135220073 -7051371 + MIR SINE MIR 82 180 -82 236 295 173 6 chr9 135221124 135221299 -7050145 - MIR SINE MIR -34 228 21 1737 188 3 0 chr9 135221792 135222095 -7049349 - AluJb SINE Alu -7 305 2 450 174 0 22 chr9 135224072 135224164 -7047280 - LTR22 LTR ERVK -490 90 1 207 248 105 45 chr9 135225332 135225465 -7045979 - L2 LINE L2 -624 2690 2550 266 276 0 46 chr9 135226260 135226347 -7045097 + C-rich Low_complexity Low_complexity 5 87 0 2188 88 0 7 chr9 135226978 135227274 -7044170 - AluY SINE Alu -17 294 1 205 287 70 78 chr9 135227597 135227726 -7043718 + L2 LINE L2 2907 3034 -238 2276 78 3 3 chr9 135227885 135228191 -7043253 + AluSx SINE Alu 1 306 -6 245 325 130 0 chr9 135229417 135229540 -7041904 - MIR3 SINE MIR -28 180 42 1185 269 33 38 chr9 135229894 135230259 -7041185 + MLT1H LTR MaLR 5 367 -182 367 139 14 37 chr9 135230421 135230505 -7040939 + MLT1H LTR MaLR 480 549 0 712 227 0 0 chr9 135230607 135230739 -7040705 - FLAM_A SINE Alu -1 132 1 212 240 20 0 chr9 135231238 135231288 -7040156 + GA-rich Low_complexity Low_complexity 2 52 0 813 270 23 9 chr9 135231584 135231799 -7039645 + MIR SINE MIR 18 235 -27 180 275 99 11 chr9 135231940 135232031 -7039413 + MIR SINE MIR 49 147 -115 804 117 25 0 chr9 135232301 135232421 -7039023 - FLAM_A SINE Alu -12 130 8 222 298 173 10 chr9 135232573 135232677 -7038767 - MIR SINE MIR -72 136 16 501 223 108 14 chr9 135234134 135234273 -7037171 + L1MC1 LINE L1 5994 6145 -188 2104 127 0 0 chr9 135234794 135235094 -7036350 - AluSq SINE Alu -13 300 1 1190 165 30 42 chr9 135235208 135235445 -7035999 + AluJo SINE Alu 1 234 -78 390 270 103 40 chr9 135236169 135236343 -7035101 + MIR SINE MIR 46 230 -32 421 255 83 45 chr9 135238664 135238821 -7032623 - L1ME4a LINE L1 0 6121 5959 1052 118 0 0 chr9 135238853 135238997 -7032447 + AluSq/x SINE Alu 8 151 -162 2123 85 26 7 chr9 135238998 135239269 -7032175 + AluSx SINE Alu 35 310 -2 251 232 0 0 chr9 135239327 135239383 -7032061 - L1ME4a LINE L1 -299 5822 5767 236 288 0 12 chr9 135239397 135239477 -7031967 - L1ME4a LINE L1 -437 5684 5606 521 245 49 43 chr9 135239712 135239896 -7031548 - MIR SINE MIR -47 215 31 221 310 160 6 chr9 135241395 135241533 -7029911 + MIR SINE MIR 20 188 -20 2176 126 14 0 chr9 135241533 135241827 -7029617 + AluSx SINE Alu 1 298 -14 221 310 160 6 chr9 135241827 135241851 -7029593 + MIR SINE MIR 188 207 -1 241 154 0 0 chr9 135243002 135243041 -7028403 - L1ME2 LINE L1 -56 6108 6070 2073 158 68 0 chr9 135243147 135243528 -7027916 + Tigger3(Golem) DNA MER2_type 2622 3028 -1 805 227 64 0 chr9 135243528 135243748 -7027696 - L1ME4a LINE L1 -920 5226 4993 429 204 0 11 chr9 135243741 135243829 -7027615 - L1ME4a LINE L1 -2019 4127 4041 * 238 333 177 7 chr9 135243838 135243985 -7027459 + MIR3 SINE MIR 36 207 -1 620 292 96 5 chr9 135245602 135245811 -7025633 - MIR SINE MIR -8 254 27 2171 105 0 68 chr9 135245911 135246235 -7025209 + AluSx SINE Alu 1 302 -10 2200 106 0 13 chr9 135246832 135247158 -7024286 - AluSx SINE Alu 0 312 1 1125 132 5 26 chr9 135247248 135247438 -7024006 + MER20 DNA MER1_type 31 216 -3 248 280 54 32 chr9 135247864 135247957 -7023487 - MIR SINE MIR -36 226 132 190 333 19 0 chr9 135248224 135248278 -7023166 + L3 LINE CR1 1418 1472 -105 679 246 56 56 chr9 135248951 135249146 -7022298 + MIR SINE MIR 27 221 -41 190 304 18 71 chr9 135249286 135249398 -7022046 - MIR SINE MIR -44 218 113 809 170 7 0 chr9 135250448 135250583 -7020861 - AluJb SINE Alu -176 136 1 1162 214 63 20 chr9 135252599 135253000 -7018444 + MER54B LTR ERVL 485 793 0 282 29 0 0 chr9 135255796 135255831 -7015613 + (CA)n Simple_repeat Simple_repeat 1 35 0 740 316 27 19 chr9 135257328 135257584 -7013860 + MIR SINE MIR 5 262 0 2414 90 3 0 chr9 135258021 135258320 -7013124 - AluSx SINE Alu -12 300 1 518 312 163 7 chr9 135258963 135259258 -7012186 - L2 LINE L2 -1 3312 2972 238 268 228 47 chr9 135259339 135259466 -7011978 - MIR SINE MIR 0 262 113 253 271 221 16 chr9 135259939 135260061 -7011383 + MIR SINE MIR 68 214 -48 2550 89 0 0 chr9 135260520 135260833 -7010611 - AluSq SINE Alu 0 313 1 1739 163 42 10 chr9 135260995 135261284 -7010160 - AluJb SINE Alu -14 298 1 632 123 0 0 chr9 135262257 135262338 -7009106 + AluJ/FLAM SINE Alu 2 82 -230 344 203 14 0 chr9 135262378 135262447 -7008997 - L1ME4a LINE L1 -6 6115 6046 351 310 84 38 chr9 135262542 135262755 -7008689 - L1ME4a LINE L1 -237 5884 5662 2351 38 41 38 chr9 135262837 135263130 -7008314 + AluY SINE Alu 1 294 -17 563 203 78 16 chr9 135263145 135263273 -7008171 - AluJo SINE Alu -39 273 138 275 327 0 10 chr9 135263288 135263389 -7008055 - L1ME4a LINE L1 -509 5612 5513 2412 69 0 31 chr9 135263941 135264258 -7007186 - AluY SINE Alu -4 307 1 728 137 46 46 chr9 135264258 135264389 -7007055 - AluJo SINE Alu -171 131 1 858 169 0 0 chr9 135264528 135264658 -7006786 + FLAM_A SINE Alu 1 130 -3 226 230 69 46 chr9 135265085 135265172 -7006272 + MIR3 SINE MIR 90 178 -30 7777 127 43 64 chr9 135265857 135266841 -7004603 - HERVH LTR ERV1 -5408 2305 1276 194 278 111 0 chr9 135266841 135266931 -7004513 + L3b LINE CR1 1135 1234 -349 7777 127 43 64 chr9 135266931 135267503 -7003941 - HERVH LTR ERV1 -6437 1276 694 2848 126 0 21 chr9 135267558 135268027 -7003417 - HERVH LTR ERV1 -7254 459 1 2692 83 106 5 chr9 135268029 135268436 -7003008 - LTR7 LTR ERV1 -2 448 1 1070 90 62 0 chr9 135268440 135268584 -7002860 + AluSg/x SINE Alu 154 306 -6 206 194 0 0 chr9 135268658 135268694 -7002750 - MIR SINE MIR -110 152 117 291 140 0 53 chr9 135270475 135270532 -7000912 - Charlie8 DNA MER1_type -2262 155 102 2064 101 3 57 chr9 135270532 135270849 -7000595 - AluSg SINE Alu -8 302 3 438 298 86 26 chr9 135270884 135271186 -7000258 + L1MEd LINE L1 299 618 -5798 459 300 73 42 chr9 135271195 135271465 -6999979 + L1MEd LINE L1 675 956 -5460 2012 175 0 9 chr9 135271465 135271780 -6999664 + AluSx SINE Alu 1 312 0 484 294 54 0 chr9 135271780 135271984 -6999460 + HAL1 LINE L1 1303 1517 -990 1595 183 7 31 chr9 135272024 135272314 -6999130 + AluJb SINE Alu 27 309 -3 307 250 21 71 chr9 135272314 135272454 -6998990 + L1MEd LINE L1 1522 1654 -4772 2320 66 7 3 chr9 135272479 135272768 -6998676 + AluY SINE Alu 1 290 -21 309 87 0 19 chr9 135272768 135272820 -6998624 + AluSq/x SINE Alu 86 132 -170 2110 105 3 10 chr9 135272820 135273124 -6998320 + AluSg SINE Alu 1 302 -8 2260 106 7 0 chr9 135274788 135275080 -6996364 + AluSx SINE Alu 1 294 -18 319 214 114 0 chr9 135275299 135275369 -6996075 - MER5A DNA MER1_type -79 110 33 535 312 172 8 chr9 135275395 135275714 -6995730 + L1 LINE L1 4039 4411 -1735 1753 171 13 32 chr9 135275817 135276126 -6995318 - AluJo SINE Alu -9 303 1 368 280 97 0 chr9 135276127 135276302 -6995142 - L1M4 LINE L1 -751 5395 5204 979 99 0 0 chr9 135276305 135276436 -6995008 - AluSp/q SINE Alu -7 306 176 2157 108 3 10 chr9 135276480 135276775 -6994669 - AluSc SINE Alu -16 293 1 2313 105 0 10 chr9 135276927 135277233 -6994211 - AluSx SINE Alu 0 312 10 2409 77 0 7 chr9 135277312 135277611 -6993833 - AluSc SINE Alu -12 297 1 2193 170 47 36 chr9 135277637 135277902 -6993542 - L1MC1 LINE L1 -6 6327 6053 2097 130 3 3 chr9 135277902 135278194 -6993250 - AluSx SINE Alu -16 296 5 2193 170 47 36 chr9 135278194 135278421 -6993023 - L1MC1 LINE L1 -280 6053 5830 1054 98 0 0 chr9 135278574 135278707 -6992737 - AluSq/x SINE Alu -179 133 1 1294 257 124 19 chr9 135278707 135279338 -6992106 - L1MDa LINE L1 -1860 4680 3984 2221 129 0 3 chr9 135279363 135279672 -6991772 - AluSg SINE Alu -2 308 1 775 282 19 34 chr9 135279702 135280025 -6991419 - L1MDa LINE L1 -3583 2957 2640 1789 126 14 32 chr9 135280027 135280332 -6991112 - AluJb SINE Alu 0 302 3 428 395 47 78 chr9 135280371 135280545 -6990899 - L1MDa LINE L1 -4444 2096 1918 2447 82 0 0 chr9 135280545 135280848 -6990596 - AluY SINE Alu -8 303 1 428 395 47 78 chr9 135280848 135281161 -6990283 - L1MDa LINE L1 -4622 1918 1624 475 198 147 32 chr9 135281658 135281815 -6989629 - LTR41 LTR ERVL -595 178 4 791 285 28 11 chr9 135281834 135281974 -6989470 - L1MB7 LINE L1 -19 6165 6029 1916 121 0 68 chr9 135281974 135282144 -6989300 - AluSx SINE Alu -26 286 145 1979 137 3 0 chr9 135282144 135282428 -6989016 - AluSx SINE Alu -20 292 8 1916 121 0 68 chr9 135282428 135282564 -6988880 - AluSx SINE Alu -167 145 1 791 285 28 11 chr9 135282564 135282707 -6988737 - L1MB7 LINE L1 -155 6029 5877 2590 66 0 0 chr9 135282719 135283021 -6988423 - AluY SINE Alu -9 302 1 2779 136 53 34 chr9 135283048 135283479 -6987965 - MER41B LTR ERV1 0 635 191 2218 124 7 0 chr9 135283479 135283786 -6987658 - AluSx SINE Alu -3 309 1 2779 136 53 34 chr9 135283786 135283860 -6987584 - MER41B LTR ERV1 -444 191 120 2799 247 111 66 chr9 135283961 135285352 -6986092 - L1MC4 LINE L1 -315 7493 6115 370 323 78 6 chr9 135285417 135285584 -6985860 - L2 LINE L2 -982 2332 2154 1356 264 99 9 chr9 135285639 135286064 -6985380 + L2 LINE L2 2307 2769 -545 670 147 163 14 chr9 135286792 135286845 -6984599 - MER33 DNA MER1_type -2261 363 319 1928 128 7 14 chr9 135286845 135287142 -6984302 - AluSx SINE Alu -17 295 1 670 147 163 14 chr9 135287142 135287305 -6984139 - MER33 DNA MER1_type -2305 319 45 2038 109 3 3 chr9 135287454 135287748 -6983696 - AluSx SINE Alu -18 294 1 209 200 67 0 chr9 135287749 135287794 -6983650 - MIR SINE MIR -102 160 113 397 295 54 30 chr9 135288232 135288398 -6983046 + MIR SINE MIR 82 251 -11 27 49 0 0 chr9 135288786 135288827 -6982617 + AT_rich Low_complexity Low_complexity 1 41 0 318 311 29 0 chr9 135288903 135289006 -6982438 - MIR SINE MIR -79 183 78 206 191 281 22 chr9 135290308 135290397 -6981047 - L2 LINE L2 -1 3312 3201 228 293 90 60 chr9 135292848 135293015 -6978429 + MER5A DNA MER1_type 18 189 0 287 236 93 25 chr9 135296212 135296349 -6975095 - MIR SINE MIR -13 249 52 814 169 52 0 chr9 135296372 135296508 -6974936 - FRAM SINE Alu -14 162 20 219 273 61 50 chr9 135297162 135297261 -6974183 + MIR SINE MIR 35 134 -74 978 156 32 16 chr9 135297279 135297465 -6973979 + MER5A DNA MER1_type 1 189 0 250 261 46 31 chr9 135297539 135297604 -6973840 - L2 LINE L2 -1 3271 3206 222 273 0 0 chr9 135299459 135299514 -6971930 + L3b LINE CR1 1180 1234 -349 1033 202 121 44 chr9 135300010 135300338 -6971106 - MLT1E LTR MaLR -7 586 260 548 208 9 0 chr9 135300374 135300480 -6970964 - MLT1E LTR MaLR -486 107 1 3792 100 2 4 chr9 135300834 135301346 -6970098 + MER9 LTR ERVK 1 511 0 22402 62 11 3 chr9 135301346 135304111 -6967333 + HERVK9 LTR ERVK 1 2786 -3130 12148 58 5 0 chr9 135304111 135305580 -6965864 + HERVK9 LTR ERVK 3711 5186 -730 1497 55 22 0 chr9 135305579 135305762 -6965682 + HERVK9 LTR ERVK 5730 5916 0 * 3730 102 4 4 chr9 135305762 135306273 -6965171 + MER9 LTR ERVK 1 511 0 884 228 87 0 chr9 135306586 135306792 -6964652 - MER58A DNA MER1_type 0 224 1 205 229 43 29 chr9 135307206 135307276 -6964168 + L2 LINE L2 3197 3267 -5 1932 144 0 13 chr9 135307643 135307956 -6963488 - AluSx SINE Alu -3 309 1 223 271 100 0 chr9 135308848 135308918 -6962526 + L2 LINE L2 2394 2470 -844 671 182 168 24 chr9 135308985 135309111 -6962333 + MER34C LTR ERV1 160 267 -318 1698 112 120 4 chr9 135309111 135309387 -6962057 + AluSg SINE Alu 1 308 -2 671 182 168 24 chr9 135309387 135309469 -6961975 + MER34C LTR ERV1 267 398 -187 384 278 7 0 chr9 135309477 135309615 -6961829 + MER57-int LTR ERV1 1096 1190 -3681 438 272 0 7 chr9 135309765 135309874 -6961570 - MER34 LTR ERV1 -446 96 1 543 210 64 89 chr9 135309883 135310001 -6961443 + MER57-int LTR ERV1 1552 1671 -3396 2027 117 3 0 chr9 135310001 135310299 -6961145 - AluSx SINE Alu -13 299 1 543 210 64 89 chr9 135310299 135310976 -6960468 + MER57-int LTR ERV1 1671 2487 -2580 1349 192 40 20 chr9 135310977 135311279 -6960165 + AluJb SINE Alu 1 308 -4 1420 230 41 21 chr9 135311420 135311855 -6959589 + MER57-int LTR ERV1 2469 2912 -2024 2463 221 40 41 chr9 135311862 135312545 -6958899 + MER57-int LTR ERV1 3077 3758 -1178 * 2583 226 67 29 chr9 135312542 135313224 -6958220 + MER57-int LTR ERV1 3385 4092 -779 258 293 85 0 chr9 135313278 135313360 -6958084 + MER70-int LTR ERVL 4578 4666 -357 1951 205 22 25 chr9 135313362 135313762 -6957682 + MER57-int LTR ERV1 6745 7143 -394 1534 128 55 22 chr9 135313764 135314191 -6957253 + LTR54 LTR ERV1 1 510 0 190 247 208 80 chr9 135314195 135314407 -6957037 + L2 LINE L2 2475 2659 -655 180 0 0 0 chr9 135314407 135314427 -6957017 + (TC)n Simple_repeat Simple_repeat 1 20 0 190 247 208 80 chr9 135314427 135314550 -6956894 + L2 LINE L2 2659 2853 -461 745 206 45 40 chr9 135314705 135314904 -6956540 + MER105 DNA DNA 3 202 -2 198 226 94 19 chr9 135314906 135314959 -6956485 + L2 LINE L2 3211 3267 -5 390 261 204 11 chr9 135314998 135315174 -6956270 + L2 LINE L2 2857 3066 -247 203 322 58 16 chr9 135365207 135365328 -6906116 + MIR SINE MIR 130 255 -7 258 81 0 0 chr9 135366208 135366245 -6905199 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 896 247 82 77 chr9 135366493 135366589 -6904855 - MLT1C LTR MaLR 0 467 373 1852 121 23 0 chr9 135366589 135366845 -6904599 + AluSx SINE Alu 44 305 -7 896 247 82 77 chr9 135366845 135367213 -6904231 - MLT1C LTR MaLR -94 373 1 1750 240 42 2 chr9 135367782 135368190 -6903254 + L1ME3 LINE L1 5456 5879 -285 1463 189 34 40 chr9 135368220 135368517 -6902927 + AluJo SINE Alu 1 295 -17 209 176 0 20 chr9 135368517 135368568 -6902876 + GA-rich Low_complexity Low_complexity 1 50 0 283 218 30 30 chr9 135368668 135368801 -6902643 + GA-rich Low_complexity Low_complexity 3 135 0 312 262 66 16 chr9 135368801 135368923 -6902521 + L1M4 LINE L1 3073 3200 -2946 435 231 135 6 chr9 135368926 135369115 -6902329 + L1ME3 LINE L1 5927 6156 -6 450 326 79 5 chr9 135369782 135369972 -6901472 + MIR SINE MIR 21 224 -38 303 252 48 10 chr9 135370523 135370626 -6900818 + MIR SINE MIR 59 165 -97 239 226 95 12 chr9 135370970 135371054 -6900390 - L1ME4a LINE L1 -38 6083 5993 1705 135 70 0 chr9 135371143 135371402 -6900042 + AluJb SINE Alu 14 290 -22 265 300 22 0 chr9 135371404 135371494 -6899950 - L1ME4a LINE L1 -272 5849 5758 460 294 39 29 chr9 135371546 135371750 -6899694 - L3 LINE CR1 -91 1486 1281 2107 123 0 41 chr9 135371798 135372115 -6899329 - AluJb SINE Alu -8 304 1 618 213 43 7 chr9 135372228 135372369 -6899075 + MIR SINE MIR 22 167 -95 1565 179 17 10 chr9 135373245 135373547 -6897897 + L1MC1 LINE L1 6025 6328 -5 1725 176 0 17 chr9 135373563 135373883 -6897561 + AluJo SINE Alu 1 315 0 3089 193 3 3 chr9 135373888 135374510 -6896934 + L1P LINE L1 4250 4871 -1275 1540 261 105 22 chr9 135374624 135375188 -6896256 - L1ME4a LINE L1 -595 5575 5059 1858 174 7 0 chr9 135375188 135375481 -6895963 - AluJo SINE Alu -11 301 7 1540 261 105 22 chr9 135375481 135375984 -6895460 - L1ME4a LINE L1 -1111 5059 4415 2593 199 23 14 chr9 135376142 135376699 -6894745 + MER68 LTR ERV1 1 562 0 1745 123 123 0 chr9 135377087 135377421 -6894023 + L1MB3 LINE L1 5806 6180 -3 251 219 31 106 chr9 135377468 135377539 -6893905 + L1ME4a LINE L1 5974 6028 -93 748 169 0 22 chr9 135377539 135377675 -6893769 - FLAM_C SINE Alu 0 133 1 251 219 31 106 chr9 135377675 135377763 -6893681 + L1ME4a LINE L1 6028 6121 0 2430 84 0 3 chr9 135377764 135378060 -6893384 - AluSx SINE Alu -17 295 1 217 263 102 25 chr9 135378334 135378452 -6892992 + MER5A DNA MER1_type 61 187 -2 253 317 0 20 chr9 135378743 135378844 -6892600 - MIR SINE MIR -110 152 54 425 238 126 47 chr9 135380029 135380243 -6891201 - MLT1C LTR MaLR -231 236 6 192 250 18 18 chr9 135380478 135380534 -6890910 - MIR SINE MIR -68 140 85 210 318 28 47 chr9 135380748 135380855 -6890589 - MER5B DNA MER1_type -52 126 22 804 250 181 25 chr9 135381082 135381177 -6890267 - MLT1L LTR MaLR 0 615 536 2043 127 19 13 chr9 135381177 135381485 -6889959 + AluSx SINE Alu 1 310 -2 804 250 181 25 chr9 135381485 135381753 -6889691 - MLT1L LTR MaLR -79 536 195 311 305 29 9 chr9 135381873 135381978 -6889466 + L2 LINE L2 3137 3243 -29 249 200 25 62 chr9 135382223 135382303 -6889141 - LTR67 LTR ERVL -3 554 478 3552 189 21 3 chr9 135382316 135383060 -6888384 + L1MB3 LINE L1 5424 6181 -2 1198 291 80 0 chr9 135384687 135385138 -6886306 + L1M4 LINE L1 3364 3850 -2296 2305 100 13 7 chr9 135385141 135385441 -6886003 + AluSx SINE Alu 1 302 -10 1861 149 14 20 chr9 135385459 135385754 -6885690 + AluJo SINE Alu 14 306 -6 814 182 0 21 chr9 135385773 135385916 -6885528 + FLAM_C SINE Alu 1 140 -3 2348 84 0 0 chr9 135385984 135386268 -6885176 + AluSx SINE Alu 1 284 -28 284 253 176 42 chr9 135386275 135386536 -6884908 + L1ME4a LINE L1 5815 6110 -11 492 250 75 27 chr9 135386637 135386825 -6884619 - LTR67 LTR ERVL -9 548 352 1178 229 87 3 chr9 135387157 135387467 -6883977 + MER58B DNA MER1_type 6 341 0 1968 214 23 57 chr9 135387556 135387661 -6883783 + MER34 LTR ERV1 12 119 -423 1956 126 4 0 chr9 135387661 135388007 -6883437 + AluSx SINE Alu 4 350 0 1968 214 23 57 chr9 135388007 135388470 -6882974 + MER34 LTR ERV1 119 538 -4 517 233 25 0 chr9 135389097 135389217 -6882227 + MLT1J2 LTR MaLR 30 152 -298 232 269 0 0 chr9 135389283 135389335 -6882109 + MLT1J1 LTR MaLR 272 323 -123 238 135 39 39 chr9 135389409 135389461 -6881983 + MLT1J1 LTR MaLR 272 323 -123 230 269 0 0 chr9 135389451 135389503 -6881941 + MLT1J1 LTR MaLR 272 323 -123 * 702 217 130 14 chr9 135389701 135389908 -6881536 + MLT1G LTR MaLR 15 245 -345 284 325 16 40 chr9 135391208 135391334 -6880110 + L2 LINE L2 2969 3091 -181 1048 131 12 0 chr9 135391456 135391616 -6879828 - AluJb SINE Alu -14 298 137 440 242 31 16 chr9 135391619 135391747 -6879697 + MIR SINE MIR 62 191 -71 1460 114 5 9 chr9 135392189 135392400 -6879044 + AluJb SINE Alu 88 297 -15 196 320 122 40 chr9 135392422 135392644 -6878800 - L2 LINE L2 -56 3216 2977 249 340 82 14 chr9 135393385 135393532 -6877912 + MIR SINE MIR 71 227 -35 198 0 0 0 chr9 135395271 135395293 -6876151 + (CAG)n Simple_repeat Simple_repeat 1 22 0 272 247 41 0 chr9 135395340 135395413 -6876031 - L3 LINE CR1 -87 1490 1415 207 182 0 0 chr9 135395761 135395794 -6875650 + polypurine Low_complexity Low_complexity 1 33 0 972 157 6 0 chr9 135396399 135396558 -6874886 + FRAM SINE Alu 1 157 -19 374 235 176 8 chr9 135396589 135396708 -6874736 + MIR SINE MIR 2 140 -122 303 228 130 0 chr9 135396758 135396881 -6874563 + LTR16A LTR ERVL 19 157 -293 2160 94 0 0 chr9 135398342 135398630 -6872814 - AluSx SINE Alu -24 288 1 228 35 0 0 chr9 135398858 135398887 -6872557 + (TC)n Simple_repeat Simple_repeat 1 29 0 417 304 77 22 chr9 135399133 135399314 -6872130 - L2 LINE L2 0 3272 3082 254 268 41 24 chr9 135399637 135399760 -6871684 + MLT1F1-int LTR MaLR 1246 1370 -1 999 252 99 45 chr9 135399769 135400265 -6871179 + MLT1F1 LTR MaLR 10 571 -22 279 0 0 0 chr9 135400265 135400296 -6871148 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 999 252 99 45 chr9 135400296 135400319 -6871125 + MLT1F1 LTR MaLR 571 591 -2 2349 96 0 3 chr9 135400393 135400705 -6870739 + AluSq SINE Alu 1 311 -2 2294 91 0 0 chr9 135401397 135401694 -6869750 - AluSx SINE Alu -15 297 1 1458 244 117 34 chr9 135401775 135402246 -6869198 - MLT1J LTR MaLR 0 511 2 281 324 38 0 chr9 135402775 135402880 -6868564 - MLT1J LTR MaLR 0 511 403 810 145 13 23 chr9 135403116 135403595 -6867849 + (TG)n Simple_repeat Simple_repeat 1 474 0 897 236 70 72 chr9 135403811 135404268 -6867176 + MLT1D LTR MaLR 42 497 -8 2229 91 0 23 chr9 135404522 135404829 -6866615 - AluSx SINE Alu -12 300 1 686 88 0 49 chr9 135404829 135404931 -6866513 - AluSg/x SINE Alu -8 304 208 602 253 89 21 chr9 135405247 135405437 -6866007 + MIR SINE MIR 28 230 -32 318 323 16 0 chr9 135406283 135406407 -6865037 - MER117 DNA MER1_type -3 194 69 280 372 31 8 chr9 135406451 135406580 -6864864 + MIR3 SINE MIR 15 146 -62 273 371 84 6 chr9 135406662 135406840 -6864604 + MIR SINE MIR 61 252 -10 2317 103 3 0 chr9 135406857 135407168 -6864276 - AluSx SINE Alu 0 312 1 2127 118 0 0 chr9 135408705 135408993 -6862451 + AluSx SINE Alu 1 288 -24 474 260 99 39 chr9 135409013 135409194 -6862250 - MIR SINE MIR -19 243 52 213 212 283 62 chr9 135409509 135409622 -6861822 - MIR SINE MIR -6 256 119 277 362 88 38 chr9 135410381 135410779 -6860665 - L2 LINE L2 -20 3293 2876 2210 100 3 10 chr9 135410868 135411179 -6860265 + AluSx SINE Alu 1 309 -3 240 35 0 0 chr9 135411311 135411340 -6860104 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 322 207 0 0 chr9 135411362 135411428 -6860016 - AluS SINE Alu -245 57 1 241 264 83 0 chr9 135413047 135413119 -6858325 - L2 LINE L2 0 3272 3195 405 288 107 17 chr9 135413279 135413456 -6857988 - MIR SINE MIR -48 214 22 1956 135 3 10 chr9 135414046 135414350 -6857094 + AluJb SINE Alu 1 302 -10 249 269 26 13 chr9 135414790 135414868 -6856576 + G-rich Low_complexity Low_complexity 4 82 0 186 43 0 0 chr9 135414878 135414901 -6856543 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 383 320 75 31 chr9 135415510 135415717 -6855727 - MIR SINE MIR -13 249 35 393 242 75 33 chr9 135416038 135416158 -6855286 - MIR SINE MIR -57 151 27 2018 109 28 0 chr9 135416804 135417089 -6854355 + AluSx SINE Alu 1 293 -19 396 207 0 0 chr9 135417097 135417184 -6854260 - MER3 DNA MER1_type -45 164 78 367 270 37 52 chr9 135417674 135417810 -6853634 - MIR SINE MIR -65 143 40 1393 233 25 42 chr9 135418164 135418347 -6853097 - MLT1J2 LTR MaLR -9 441 256 1143 229 28 0 chr9 135418347 135418565 -6852879 - MER58A DNA MER1_type 0 224 1 1393 233 25 42 chr9 135418565 135418781 -6852663 - MLT1J2 LTR MaLR -194 256 49 187 283 0 0 chr9 135419108 135419154 -6852290 - L2 LINE L2 -61 3252 3207 438 258 179 44 chr9 135419279 135419749 -6851695 + MLT1H LTR MaLR 3 540 -2 453 275 58 0 chr9 135419749 135419887 -6851557 - MIR SINE MIR -105 157 12 185 360 0 0 chr9 135419858 135419908 -6851536 + L2 LINE L2 3165 3214 -99 * 781 189 20 16 chr9 135419911 135420201 -6851243 + MSTD LTR MaLR 17 396 0 226 274 59 49 chr9 135420201 135420303 -6851141 + L2 LINE L2 3210 3312 -1 198 103 0 0 chr9 135420906 135420935 -6850509 + (CA)n Simple_repeat Simple_repeat 2 30 0 333 118 0 0 chr9 135421105 135421156 -6850288 + (CA)n Simple_repeat Simple_repeat 2 52 0 216 289 0 82 chr9 135421464 135421561 -6849883 + L2 LINE L2 3181 3269 -3 494 319 100 9 chr9 135421776 135421986 -6849458 + MIR SINE MIR 15 243 -19 1633 179 31 0 chr9 135422436 135422727 -6848717 + AluJo SINE Alu 1 300 -12 249 361 102 6 chr9 135423585 135423751 -6847693 - MIR SINE MIR -61 201 20 250 242 0 16 chr9 135423801 135423863 -6847581 - MER116 DNA Mariner -18 62 2 241 309 27 27 chr9 135424429 135424539 -6846905 - L2 LINE L2 0 3272 3163 727 242 108 21 chr9 135424629 135424869 -6846575 - MIR SINE MIR -1 261 1 2065 136 0 13 chr9 135425308 135425609 -6845835 - AluSx SINE Alu -15 297 1 200 360 27 0 chr9 135425611 135425686 -6845758 + MIR3 SINE MIR 112 188 -20 502 133 86 0 chr9 135425902 135426007 -6845437 + MSTA LTR MaLR 58 171 -257 864 149 75 11 chr9 135426029 135426217 -6845227 - MSTB LTR MaLR -56 370 171 * 1188 114 102 45 chr9 135426210 135426237 -6845207 + MSTA LTR MaLR 170 194 -234 2004 94 72 0 chr9 135426237 135426513 -6844931 + AluSx SINE Alu 1 296 -16 1188 114 102 45 chr9 135426513 135426730 -6844714 + MSTA LTR MaLR 194 428 0 1214 245 65 26 chr9 135426730 135427114 -6844330 + MLT1C LTR MaLR 69 467 0 464 325 82 4 chr9 135427120 135427363 -6844081 - L2 LINE L2 -194 3078 2817 1811 153 16 16 chr9 135428649 135428780 -6842664 + AluJb SINE Alu 2 132 -180 1596 163 53 27 chr9 135428780 135429081 -6842363 + AluSx SINE Alu 1 309 -3 1811 153 16 16 chr9 135429081 135429256 -6842188 + AluJb SINE Alu 131 308 -4 264 243 29 0 chr9 135429520 135429590 -6841854 - L2 LINE L2 -8 3264 3193 1297 106 0 0 chr9 135429934 135430113 -6841331 + AluSg/x SINE Alu 122 300 -12 455 363 34 11 chr9 135430126 135430305 -6841139 - MIR SINE MIR -19 243 61 1868 189 0 0 chr9 135430383 135430689 -6840755 + AluJo SINE Alu 1 306 -6 2514 149 108 38 chr9 135430722 135431192 -6840252 - MLT1D LTR MaLR -2 503 1 1976 160 0 0 chr9 135431421 135431721 -6839723 - AluSx SINE Alu -12 300 1 292 341 97 58 chr9 135431964 135432189 -6839255 - L2 LINE L2 0 3313 3071 1671 163 50 3 chr9 135432189 135432471 -6838973 - AluJb SINE Alu -13 299 5 292 341 97 58 chr9 135432471 135432556 -6838888 - L2 LINE L2 -242 3071 2991 2227 122 0 0 chr9 135432727 135433039 -6838405 - AluSx SINE Alu 0 312 1 391 372 19 6 chr9 135433297 135433453 -6837991 + MIR3 SINE MIR 44 201 -7 366 314 112 45 chr9 135433888 135434102 -6837342 + MIR SINE MIR 34 260 -2 219 227 27 80 chr9 135434155 135434230 -6837214 + MIR3 SINE MIR 127 197 -11 243 0 0 0 chr9 135434644 135434671 -6836773 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 232 200 73 18 chr9 135435238 135435293 -6836151 + MIR SINE MIR 88 145 -117 2532 174 48 57 chr9 135436119 135436201 -6835243 - MER74A LTR ERVL -1 557 476 2298 53 0 33 chr9 135436201 135436504 -6834940 + AluY SINE Alu 1 293 -18 2532 174 48 57 chr9 135436504 135436983 -6834461 - MER74A LTR ERVL -82 476 1 224 340 64 0 chr9 135437291 135437385 -6834059 + MIR SINE MIR 24 123 -139 * 269 331 53 35 chr9 135437377 135437546 -6833898 - MIR3 SINE MIR -35 173 2 332 215 38 0 chr9 135438214 135438293 -6833151 + MIR SINE MIR 89 170 -92 2080 112 10 7 chr9 135438370 135438674 -6832770 - AluSx SINE Alu -6 306 2 552 338 94 29 chr9 135438691 135439073 -6832371 + L2 LINE L2 2823 3229 -43 236 195 0 0 chr9 135439453 135439494 -6831950 + L2 LINE L2 3206 3246 -26 316 270 150 10 chr9 135440010 135440110 -6831334 + L2 LINE L2 3200 3313 0 1870 124 0 49 chr9 135440472 135440779 -6830665 + AluSx SINE Alu 21 312 0 452 234 99 0 chr9 135441067 135441178 -6830266 - L1MA10 LINE L1 -8 6326 6205 824 192 11 11 chr9 135441182 135441359 -6830085 + MLT1C LTR MaLR 1 177 -213 1797 91 0 8 chr9 135441360 135441603 -6829841 + AluSq SINE Alu 1 241 -72 1058 119 0 0 chr9 135441603 135441788 -6829656 + AluSq SINE Alu 144 313 0 892 136 113 117 chr9 135441793 135442006 -6829438 + MLT1C LTR MaLR 179 467 0 243 261 45 75 chr9 135442011 135442145 -6829299 - L1ME1 LINE L1 -119 6047 5918 2034 108 0 27 chr9 135442157 135442454 -6828990 + AluSc SINE Alu 1 289 -20 501 200 10 0 chr9 135442484 135442584 -6828860 - AluSg/x SINE Alu -77 233 133 961 45 0 0 chr9 135442584 135442696 -6828748 + HERVK9 LTR ERVK 2675 2786 -3130 12054 61 5 0 chr9 135442696 135444165 -6827279 + HERVK9 LTR ERVK 3711 5186 -730 1497 55 22 0 chr9 135444164 135444347 -6827097 + HERVK9 LTR ERVK 5730 5916 0 * 3730 102 4 4 chr9 135444347 135444858 -6826586 + MER9 LTR ERVK 1 511 0 884 228 87 0 chr9 135445171 135445377 -6826067 - MER58A DNA MER1_type 0 224 1 205 229 43 29 chr9 135445791 135445861 -6825583 + L2 LINE L2 3197 3267 -5 1932 144 0 13 chr9 135446228 135446541 -6824903 - AluSx SINE Alu -3 309 1 223 271 100 0 chr9 135447433 135447503 -6823941 + L2 LINE L2 2394 2470 -844 671 182 168 24 chr9 135447570 135447696 -6823748 + MER34C LTR ERV1 160 267 -318 1698 112 120 4 chr9 135447696 135447972 -6823472 + AluSg SINE Alu 1 308 -2 671 182 168 24 chr9 135447972 135448054 -6823390 + MER34C LTR ERV1 267 398 -187 384 278 7 0 chr9 135448062 135448200 -6823244 + MER57-int LTR ERV1 1096 1190 -3681 438 272 0 7 chr9 135448350 135448459 -6822985 - MER34 LTR ERV1 -446 96 1 563 211 64 88 chr9 135448468 135448586 -6822858 + MER57-int LTR ERV1 1552 1671 -3396 2027 117 3 0 chr9 135448586 135448884 -6822560 - AluSx SINE Alu -13 299 1 563 211 64 88 chr9 135448884 135449561 -6821883 + MER57-int LTR ERV1 1671 2487 -2580 1349 192 40 20 chr9 135449562 135449864 -6821580 + AluJb SINE Alu 1 308 -4 1413 232 41 21 chr9 135450005 135450440 -6821004 + MER57-int LTR ERV1 2469 2912 -2024 2463 221 40 41 chr9 135450447 135451130 -6820314 + MER57-int LTR ERV1 3077 3758 -1178 * 2581 232 62 24 chr9 135451127 135451809 -6819635 + MER57-int LTR ERV1 3385 4092 -779 258 293 85 0 chr9 135451863 135451945 -6819499 + MER70-int LTR ERVL 4578 4666 -357 1951 205 22 25 chr9 135451947 135452347 -6819097 + MER57-int LTR ERV1 6745 7143 -394 1534 128 55 22 chr9 135452349 135452776 -6818668 + LTR54 LTR ERV1 1 510 0 190 247 208 80 chr9 135452780 135452992 -6818452 + L2 LINE L2 2475 2659 -655 180 0 0 0 chr9 135452992 135453012 -6818432 + (TC)n Simple_repeat Simple_repeat 1 20 0 190 247 208 80 chr9 135453012 135453135 -6818309 + L2 LINE L2 2659 2853 -461 745 206 45 40 chr9 135453290 135453489 -6817955 + MER105 DNA DNA 3 202 -2 198 226 94 19 chr9 135453491 135453544 -6817900 + L2 LINE L2 3211 3267 -5 608 267 155 84 chr9 135453583 135453844 -6817600 + L2 LINE L2 2857 3161 -152 1812 27 5 0 chr9 135453844 135454064 -6817380 - L1PA4 LINE L1 0 6155 5935 608 267 155 84 chr9 135454064 135454229 -6817215 + L2 LINE L2 3161 3313 0 395 310 55 0 chr9 135454706 135454840 -6816604 + MER57-int LTR ERV1 6927 7043 -494 612 201 185 23 chr9 135455011 135455346 -6816098 - MLT1F LTR MaLR -111 456 1 643 195 73 24 chr9 135455365 135455529 -6815915 + MER58C DNA MER1_type 44 215 0 532 283 106 11 chr9 135455925 135456105 -6815339 - MIR SINE MIR -2 260 64 638 271 47 1 chr9 135457335 135457518 -6813926 + MIR SINE MIR 1 188 -66 581 236 110 66 chr9 135457544 135457990 -6813454 + MLT1H LTR MaLR 1 534 -15 2432 240 88 28 chr9 135458041 135458286 -6813158 + L2 LINE L2 1598 1827 -1487 2248 99 3 0 chr9 135458286 135458590 -6812854 - AluSp SINE Alu -8 305 1 2432 240 88 28 chr9 135458590 135459228 -6812216 + L2 LINE L2 1827 2534 -780 526 297 193 15 chr9 135459290 135459627 -6811817 + L2 LINE L2 2916 3312 -1 261 185 74 0 chr9 135459881 135459935 -6811509 + MER58 DNA MER1_type 42 99 -2321 444 216 39 10 chr9 135459945 135460047 -6811397 + MER58 DNA MER1_type 2316 2420 0 210 255 16 60 chr9 135460596 135460780 -6810664 + (TTATA)n Simple_repeat Simple_repeat 4 179 0 393 291 47 16 chr9 135460809 135460936 -6810508 + MIR3 SINE MIR 72 202 -6 311 333 85 45 chr9 135461674 135461920 -6809524 + L1ME LINE L1 5563 5818 -303 973 185 131 31 chr9 135462084 135462344 -6809100 - AluJb SINE Alu -16 286 1 836 237 93 0 chr9 135462487 135462702 -6808742 - MIR SINE MIR 0 262 28 569 298 45 25 chr9 135463030 135463228 -6808216 - MIR SINE MIR 0 262 61 225 115 98 0 chr9 135463776 135463837 -6807607 + GA-rich Low_complexity Low_complexity 2 68 0 296 232 42 78 chr9 135464314 135464456 -6806988 - L2 LINE L2 -37 3276 3140 1895 134 0 26 chr9 135465306 135465613 -6805831 - AluSx SINE Alu -11 301 3 307 239 60 60 chr9 135466336 135466453 -6804991 - L1MC5 LINE L1 -53 7908 7792 1989 122 0 0 chr9 135466477 135466764 -6804680 - AluSx SINE Alu -3 309 23 382 60 34 0 chr9 135466772 135466835 -6804609 - LTR49 LTR ERV1 -71 573 468 349 237 103 67 chr9 135466840 135467064 -6804380 - L1MC4 LINE L1 -157 7885 7654 1728 125 11 11 chr9 135467767 135468046 -6803398 - AluSx SINE Alu -2 310 32 2139 109 0 0 chr9 135468431 135468724 -6802720 + AluSg1 SINE Alu 1 293 -16 401 346 20 10 chr9 135469950 135469971 -6801473 + MIR SINE MIR 49 68 -194 1848 111 0 0 chr9 135469971 135470233 -6801211 + AluSx SINE Alu 1 262 -50 401 346 20 10 chr9 135470233 135470413 -6801031 + MIR SINE MIR 68 252 -10 1878 137 0 3 chr9 135470535 135470828 -6800616 - AluJb SINE Alu -14 298 7 2076 112 3 3 chr9 135470844 135471140 -6800304 - AluSx SINE Alu -16 296 1 325 214 0 0 chr9 135471749 135471805 -6799639 + L2 LINE L2 3258 3313 0 324 325 44 19 chr9 135472980 135473140 -6798304 + MIR SINE MIR 29 192 -70 761 183 0 0 chr9 135473164 135473295 -6798149 + AluJb SINE Alu 176 306 -6 21 0 0 0 chr9 135473487 135473508 -6797936 + AT_rich Low_complexity Low_complexity 1 21 0 600 115 39 10 chr9 135473536 135473640 -6797804 - FLAM_A SINE Alu -15 127 21 1764 148 10 13 chr9 135474184 135474489 -6796955 - AluJo SINE Alu -8 304 1 196 152 22 65 chr9 135474613 135474659 -6796785 - MIR3 SINE MIR -3 205 162 2137 92 0 23 chr9 135475056 135475362 -6796082 + AluSc SINE Alu 1 299 -10 193 224 288 24 chr9 135475379 135475504 -6795940 - MIR3 SINE MIR -48 160 3 1656 168 0 23 chr9 135475962 135476272 -6795172 + AluJb SINE Alu 1 303 -9 268 324 9 18 chr9 135476272 135476383 -6795061 + L2 LINE L2 2740 2849 -465 349 296 247 10 chr9 135476846 135476971 -6794473 - L2 LINE L2 -4 3309 3215 1815 125 42 3 chr9 135476971 135477258 -6794186 + AluSx SINE Alu 1 298 -14 349 296 247 10 chr9 135477258 135477423 -6794021 - L2 LINE L2 -98 3215 2950 206 297 10 89 chr9 135477492 135477593 -6793851 - MIR SINE MIR -119 143 51 773 295 112 60 chr9 135477637 135478237 -6793207 - L2 LINE L2 -337 2977 2347 753 165 0 0 chr9 135478495 135478610 -6792834 - FLAM_A SINE Alu -18 115 1 1019 246 130 26 chr9 135478616 135478962 -6792482 - Charlie7 DNA MER1_type -1864 748 367 269 67 44 0 chr9 135479036 135479081 -6792363 - Alu SINE Alu 0 301 255 446 241 48 98 chr9 135479087 135479325 -6792119 - MIR SINE MIR 0 262 38 2348 90 0 3 chr9 135479351 135479663 -6791781 - AluSx SINE Alu -1 311 1 306 181 69 14 chr9 135479664 135479736 -6791708 + MIR SINE MIR 114 189 -73 356 204 237 7 chr9 135479876 135480028 -6791416 + MER5A DNA MER1_type 3 189 0 345 250 0 12 chr9 135480708 135480792 -6790652 + MER94 DNA DNA 17 99 -35 187 241 121 17 chr9 135480978 135481036 -6790408 + L2 LINE L2 3154 3217 -55 1916 143 47 9 chr9 135481128 135481450 -6789994 - MER2 DNA MER2_type 0 345 12 972 161 0 28 chr9 135482197 135482377 -6789067 + FRAM SINE Alu 1 175 -1 1990 128 0 0 chr9 135482389 135482694 -6788750 + AluSx SINE Alu 1 305 0 23 68 0 0 chr9 135482694 135482738 -6788706 + AT_rich Low_complexity Low_complexity 1 44 0 3255 163 56 34 chr9 135482747 135483427 -6788017 - L1MB3 LINE L1 -7 6176 5482 562 270 33 33 chr9 135483472 135483683 -6787761 + Tigger8 DNA MER2_type 226 436 -230 2407 51 0 0 chr9 135483791 135484084 -6787360 + AluY SINE Alu 1 293 -18 593 223 209 0 chr9 135484387 135484526 -6786918 - MER21B LTR ERV1 -368 495 328 353 150 0 0 chr9 135484526 135484586 -6786858 - L1MB3 LINE L1 -681 5490 5431 248 136 34 0 chr9 135484588 135484647 -6786797 + (TATG)n Simple_repeat Simple_repeat 1 61 0 1522 166 30 37 chr9 135484652 135484947 -6786497 - 7SLRNA srpRNA srpRNA -27 293 1 849 178 26 0 chr9 135484950 135485102 -6786342 - FRAM SINE Alu -20 156 1 864 128 1 45 chr9 135485107 135485240 -6786204 - L1MB3 LINE L1 -733 5437 5310 2387 60 0 7 chr9 135485240 135485539 -6785905 - AluY SINE Alu -14 297 1 864 128 1 45 chr9 135485539 135485584 -6785860 - L1MB3 LINE L1 -860 5310 5265 241 140 60 0 chr9 135485629 135485679 -6785765 + L1MD2 LINE L1 5763 5815 -351 835 134 0 0 chr9 135485779 135485903 -6785541 + AluSg/x SINE Alu 181 300 -12 470 213 92 53 chr9 135485899 135486054 -6785390 + L1MD2 LINE L1 5956 6138 -50 * 998 198 28 32 chr9 135486057 135486274 -6785170 + AluJb SINE Alu 84 299 -13 200 374 0 0 chr9 135486682 135486781 -6784663 - MIR3 SINE MIR -49 159 61 589 276 23 38 chr9 135488060 135488325 -6783119 - MIR SINE MIR 0 262 2 282 278 61 94 chr9 135488932 135489112 -6782332 + MIR SINE MIR 88 261 -1 2633 68 0 0 chr9 135489168 135489479 -6781965 + AluY SINE Alu 1 311 0 2308 66 3 66 chr9 135489663 135489983 -6781461 + AluSg SINE Alu 11 310 0 262 267 21 0 chr9 135489984 135490090 -6781354 - MIR SINE MIR -22 186 77 261 211 54 130 chr9 135490306 135490468 -6780976 + MIR SINE MIR 38 187 -63 241 263 63 32 chr9 135491696 135491791 -6779653 + L2 LINE L2 3169 3266 -6 492 279 26 74 chr9 135491965 135492194 -6779250 - Charlie8 DNA MER1_type -2192 225 8 2508 53 0 13 chr9 135493528 135493830 -6777614 + AluY SINE Alu 1 298 -13 777 139 0 39 chr9 135493830 135493959 -6777485 - AluJo/FLAM SINE Alu -177 125 2 266 208 0 26 chr9 135494035 135494112 -6777332 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 247 304 140 34 chr9 135494363 135494570 -6776874 + MIR SINE MIR 20 248 -14 34 84 0 0 chr9 135495356 135495439 -6776005 + GC_rich Low_complexity Low_complexity 1 83 0 27 96 0 0 chr9 135495527 135495610 -6775834 + GC_rich Low_complexity Low_complexity 1 83 0 35 41 0 0 chr9 135495675 135495724 -6775720 + GC_rich Low_complexity Low_complexity 1 49 0 255 251 17 46 chr9 135495724 135495899 -6775545 + (CCCCG)n Simple_repeat Simple_repeat 2 171 0 * 280 253 29 12 chr9 135495831 135496001 -6775443 + (CCG)n Simple_repeat Simple_repeat 3 175 0 2372 106 0 0 chr9 135496443 135496746 -6774698 - AluSc SINE Alu -6 303 1 2443 77 0 10 chr9 135497147 135497444 -6774000 + AluSc SINE Alu 1 294 -15 2015 158 3 0 chr9 135497449 135497760 -6773684 + AluJb SINE Alu 1 312 0 2450 81 0 0 chr9 135498193 135498490 -6772954 + AluSx SINE Alu 1 297 -15 256 357 14 14 chr9 135499031 135499171 -6772273 + L2 LINE L2 2923 3062 -251 801 289 12 36 chr9 135499339 135499588 -6771856 - MLT1K LTR MaLR -188 400 158 823 196 7 0 chr9 135499635 135499778 -6771666 + FAM SINE Alu 29 172 -13 2169 172 27 19 chr9 135500740 135501152 -6770292 + LTR3 LTR ERVK 1 415 -17 268 119 0 0 chr9 135501175 135501217 -6770227 + HERVK3 LTR ERVK 1 42 -7201 244 271 59 12 chr9 135501348 135501433 -6770011 - MIR SINE MIR -169 93 5 2217 98 7 0 chr9 135501796 135502109 -6769335 - AluSx SINE Alu 0 317 3 985 204 15 5 chr9 135502506 135502712 -6768732 + L1MB3 LINE L1 5935 6142 -41 2777 51 0 0 chr9 135502712 135503023 -6768421 + AluY SINE Alu 1 311 0 287 219 78 0 chr9 135503033 135503097 -6768347 + AluSp SINE Alu 121 189 -114 24 0 0 0 chr9 135503227 135503251 -6768193 + AT_rich Low_complexity Low_complexity 1 24 0 2353 95 0 16 chr9 135503276 135503581 -6767863 + AluY SINE Alu 1 300 -11 1721 174 7 3 chr9 135503699 135504022 -6767422 - AluJb SINE Alu 0 324 1 338 280 184 0 chr9 135504137 135504262 -6767182 - L2 LINE L2 -4 3309 3162 2154 126 3 0 chr9 135504266 135504567 -6766877 + AluSx SINE Alu 1 302 -10 733 286 29 35 chr9 135504573 135504866 -6766578 + L1ME1 LINE L1 5874 6162 -4 2097 105 0 4 chr9 135505202 135505469 -6765975 - AluSg SINE Alu -44 266 1 583 154 0 64 chr9 135505757 135505867 -6765577 - AluSc SINE Alu -98 211 109 1109 99 0 0 chr9 135505970 135506138 -6765306 - AluSq SINE Alu 0 311 144 1923 91 0 8 chr9 135506138 135506381 -6765063 - AluSq SINE Alu -72 241 1 516 162 18 9 chr9 135506382 135506493 -6764951 - MLT1B LTR MaLR -213 177 66 1098 117 33 56 chr9 135506493 135506673 -6764771 - AluSq SINE Alu -133 180 5 316 174 47 58 chr9 135506689 135506775 -6764669 - L1ME3 LINE L1 -263 5899 5815 279 0 0 0 chr9 135506775 135506806 -6764638 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 452 235 103 7 chr9 135506911 135507047 -6764397 + L2 LINE L2 3161 3309 -4 230 223 282 10 chr9 135507370 135507473 -6763971 - L2 LINE L2 -2 3270 3140 2299 103 13 0 chr9 135507501 135507801 -6763643 + AluSx SINE Alu 1 304 -8 203 0 37 0 chr9 135508286 135508313 -6763131 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 415 165 0 21 chr9 135509097 135509194 -6762250 + GA-rich Low_complexity Low_complexity 2 96 0 210 244 0 22 chr9 135509266 135509311 -6762133 - L3b LINE CR1 -8 1575 1532 1006 163 0 43 chr9 135509352 135509536 -6761908 + AluJb SINE Alu 136 311 -1 965 113 0 0 chr9 135509581 135509705 -6761739 + AluSq/x SINE Alu 9 132 -181 2274 116 0 0 chr9 135509709 135510002 -6761442 - AluSq SINE Alu -18 295 3 310 279 12 0 chr9 135510441 135510527 -6760917 + MIR SINE MIR 162 248 -14 263 93 23 0 chr9 135510533 135510576 -6760868 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1748 163 3 3 chr9 135510578 135510860 -6760584 - AluJb SINE Alu -30 282 1 206 121 0 0 chr9 135510867 135510900 -6760544 + (TTTTTA)n Simple_repeat Simple_repeat 1 33 0 434 212 0 62 chr9 135510981 135511094 -6760350 - MIR SINE MIR -97 165 60 204 97 0 0 chr9 135511564 135511595 -6759849 + (TG)n Simple_repeat Simple_repeat 1 31 0 626 246 105 5 chr9 135511805 135511915 -6759529 + L1ME3 LINE L1 5544 5642 -528 303 28 0 0 chr9 135511915 135511951 -6759493 + (CA)n Simple_repeat Simple_repeat 2 37 0 626 246 105 5 chr9 135511951 135512031 -6759413 + L1ME3 LINE L1 5642 5753 -417 966 214 0 0 chr9 135512031 135512209 -6759235 + AluJb SINE Alu 124 301 -11 386 250 108 51 chr9 135512210 135512294 -6759150 + L1ME3 LINE L1 5757 5835 -327 1828 146 13 39 chr9 135512294 135512602 -6758842 + AluJo SINE Alu 1 300 -12 386 250 108 51 chr9 135512602 135512693 -6758751 + L1ME3 LINE L1 5835 5942 -220 2270 117 7 7 chr9 135512699 135513008 -6758436 + AluY SINE Alu 1 309 -2 1219 135 16 0 chr9 135513010 135513195 -6758249 + AluSg/x SINE Alu 119 306 -4 444 223 61 96 chr9 135513205 135513402 -6758042 + L1ME3 LINE L1 5951 6140 -22 1880 156 0 41 chr9 135513419 135513733 -6757711 + AluJo SINE Alu 1 301 -11 2279 127 0 0 chr9 135513736 135514043 -6757401 + AluSg SINE Alu 1 307 -3 326 276 41 20 chr9 135514325 135514423 -6757021 + L1ME4a LINE L1 6021 6120 -1 278 328 125 0 chr9 135514681 135514809 -6756635 - MIR SINE MIR -48 214 71 325 312 45 19 chr9 135514979 135515136 -6756308 - MIR SINE MIR -92 170 10 459 311 148 31 chr9 135515618 135515875 -6755569 + L1MC4a LINE L1 5543 5829 -1979 2016 155 40 19 chr9 135515946 135516372 -6755072 - L1MD1 LINE L1 0 6242 5808 1887 128 6 66 chr9 135516373 135516693 -6754751 - AluJb SINE Alu 0 312 12 276 237 0 13 chr9 135516696 135516772 -6754672 - L1M4 LINE L1 -1261 4885 4811 2287 96 0 23 chr9 135516914 135517217 -6754227 - AluSx SINE Alu -16 296 1 320 211 2 2 chr9 135517534 135517611 -6753833 + HAL1b LINE L1 1232 1304 -44 1200 160 221 0 chr9 135517662 135517906 -6753538 + AluJo SINE Alu 3 300 -2 2273 107 7 3 chr9 135518362 135518661 -6752783 - AluJb SINE Alu -12 300 1 2318 70 3 7 chr9 135519172 135519501 -6751943 + AluSg SINE Alu 1 328 0 3333 138 36 78 chr9 135519525 135519568 -6751876 + L1MB3 LINE L1 5448 5491 -692 2347 128 0 0 chr9 135519568 135519880 -6751564 + AluSx SINE Alu 1 312 0 3333 138 36 78 chr9 135519880 135520010 -6751434 + L1MB3 LINE L1 5491 5625 -558 1600 170 0 75 chr9 135520010 135520316 -6751128 + AluJb SINE Alu 2 284 -28 3333 138 36 78 chr9 135520316 135520332 -6751112 + L1MB3 LINE L1 5625 5640 -543 2159 111 17 0 chr9 135520332 135520620 -6750824 + AluSp SINE Alu 1 293 -20 3333 138 36 78 chr9 135520620 135521151 -6750293 + L1MB3 LINE L1 5640 6140 -43 882 143 82 20 chr9 135521151 135521298 -6750146 + FRAM SINE Alu 1 154 -22 306 77 0 19 chr9 135521299 135521351 -6750093 + L1MB2 LINE L1 6117 6167 -4 21 0 0 0 chr9 135521351 135521372 -6750072 + AT_rich Low_complexity Low_complexity 1 21 0 326 120 20 0 chr9 135521477 135521527 -6749917 - Alu SINE Alu -249 51 1 596 174 0 35 chr9 135522651 135522766 -6748678 - AluSg/x SINE Alu -15 295 185 2040 139 0 22 chr9 135522898 135523215 -6748229 - AluJo SINE Alu -2 310 1 233 313 61 0 chr9 135523492 135523591 -6747853 - MIR SINE MIR -68 140 36 * 439 278 207 12 chr9 135523588 135523912 -6747532 - L2 LINE L2 -1 3312 2926 4102 222 27 51 chr9 135524458 135524672 -6746772 + L1MD2 LINE L1 5099 5317 -1042 2250 116 0 3 chr9 135524672 135524966 -6746478 + AluSx SINE Alu 1 293 -19 4102 222 27 51 chr9 135524966 135525785 -6745659 + L1MD2 LINE L1 5317 6104 -255 1469 126 14 0 chr9 135525785 135525992 -6745452 + AluJb SINE Alu 84 293 -19 4102 222 27 51 chr9 135525992 135526229 -6745215 + L1MD2 LINE L1 6104 6345 -14 444 310 21 5 chr9 135526483 135526670 -6744774 + MLT1J LTR MaLR 84 273 -238 228 122 0 49 chr9 135526693 135526734 -6744710 + MLT1J1 LTR MaLR 291 329 -117 263 48 0 24 chr9 135526877 135526919 -6744525 + (CAA)n Simple_repeat Simple_repeat 1 41 0 271 257 64 36 chr9 135526934 135527074 -6744370 + L1ME4a LINE L1 5974 6117 -4 862 154 0 0 chr9 135528757 135528880 -6742564 - FLAM_C SINE Alu -20 123 1 1965 117 7 15 chr9 135529348 135529622 -6741822 - AluSx SINE Alu -40 272 1 1060 279 50 12 chr9 135529891 135530292 -6741152 + MER113 DNA MER1_type? 20 435 -86 1373 235 56 11 chr9 135530357 135530896 -6740548 + HsTC2c DNA Tc2 93 726 -3 214 143 61 0 chr9 135531036 135531085 -6740359 - MER5A DNA MER1_type -30 159 108 1903 109 60 14 chr9 135531094 135531377 -6740067 - AluJb SINE Alu -16 296 1 882 118 0 62 chr9 135533822 135533966 -6737478 - FRAM SINE Alu -16 160 26 467 260 124 0 chr9 135534501 135534678 -6736766 + MER63A DNA MER1_type 12 210 0 314 259 0 12 chr9 135534763 135534848 -6736596 + L2 LINE L2 3230 3313 0 407 221 26 18 chr9 135735664 135735777 -6535667 + HAL1 LINE L1 1243 1356 -1151 2336 227 166 30 chr9 135735793 135735849 -6535595 + HAL1 LINE L1 1441 1488 -1019 2014 100 0 0 chr9 135735849 135736098 -6535346 - AluSx SINE Alu -12 300 52 2336 227 166 30 chr9 135736098 135736199 -6535245 + HAL1 LINE L1 1488 1574 -933 1569 188 10 52 chr9 135736199 135736508 -6534936 - AluJo SINE Alu -16 296 1 2336 227 166 30 chr9 135736508 135737277 -6534167 + HAL1 LINE L1 1574 2494 -13 228 281 0 11 chr9 135737292 135737381 -6534063 - L1MC4 LINE L1 -1340 6702 6615 345 176 0 0 chr9 135737389 135737440 -6534004 + L1MC4 LINE L1 6658 6708 -1334 366 206 39 49 chr9 135737771 135737873 -6533571 + FAM SINE Alu 32 132 -43 2446 82 3 0 chr9 135738398 135738702 -6532742 + AluSx SINE Alu 1 305 -7 1814 157 23 7 chr9 135739426 135739731 -6531713 - AluSx SINE Alu -2 310 1 285 257 0 145 chr9 135739957 135739992 -6531452 + MER91A DNA MER1_type 67 105 -91 991 182 70 125 chr9 135739992 135740377 -6531067 - MLT1A1 LTR MaLR -1 364 1 285 257 0 145 chr9 135740377 135740493 -6530951 + MER91A DNA MER1_type 105 196 0 1991 169 3 0 chr9 135740707 135741009 -6530435 + AluJo SINE Alu 1 303 -9 2359 96 0 19 chr9 135741210 135741522 -6529922 - AluSq SINE Alu -7 306 1 215 252 387 8 chr9 135741710 135741829 -6529615 - MER5A DNA MER1_type 0 189 26 381 319 47 26 chr9 135741842 135742033 -6529411 + MIR SINE MIR 3 197 -65 243 256 58 0 chr9 135742242 135742328 -6529116 + L2 LINE L2 3180 3270 -2 1788 186 6 6 chr9 135743528 135743840 -6527604 + AluJo SINE Alu 1 312 0 777 85 43 0 chr9 135743840 135743981 -6527463 + GA-rich Low_complexity Low_complexity 4 150 0 2220 123 3 0 chr9 135743987 135744289 -6527155 + AluSg SINE Alu 5 396 0 218 281 34 0 chr9 135744289 135744378 -6527066 + GA-rich Low_complexity Low_complexity 1 180 0 948 134 0 108 chr9 135744730 135744916 -6526528 + AluJo SINE Alu 1 166 -146 405 171 0 13 chr9 135744916 135744992 -6526452 + THE1B LTR MaLR 290 364 0 289 310 55 35 chr9 135745022 135745167 -6526277 - MIR3 SINE MIR -1 207 60 211 279 96 29 chr9 135745269 135745373 -6526071 + MIR3 SINE MIR 96 206 -2 770 160 0 0 chr9 135746185 135746304 -6525140 - FLAM_C SINE Alu -13 120 2 2116 136 0 3 chr9 135746336 135746649 -6524795 + AluSx SINE Alu 1 312 0 2220 95 7 3 chr9 135746968 135747253 -6524191 - AluSg SINE Alu -24 286 1 191 339 83 33 chr9 135747857 135748037 -6523407 - L2 LINE L2 -255 3017 2829 2338 86 0 0 chr9 135748116 135748407 -6523037 - AluSc SINE Alu -18 291 1 309 189 99 72 chr9 135748641 135748752 -6522692 - L1MC4a LINE L1 -1856 5952 5839 453 275 12 50 chr9 135748920 135749080 -6522364 + MER103 DNA DNA 12 165 -1 2622 109 0 3 chr9 135749760 135750136 -6521308 + THE1C LTR MaLR 1 375 0 392 218 177 14 chr9 135750330 135750477 -6520967 - MIR3 SINE MIR -3 205 35 286 336 36 29 chr9 135750498 135750635 -6520809 + MIR SINE MIR 124 261 -1 238 250 0 0 chr9 135751755 135751811 -6519633 + MIR SINE MIR 85 140 -68 366 344 48 8 chr9 135752228 135752353 -6519091 + MIR3 SINE MIR 14 143 -65 451 349 8 5 chr9 135752487 135752621 -6518823 + MIR SINE MIR 16 149 -100 2072 140 85 18 chr9 135752621 135753022 -6518422 + MSTA LTR MaLR 1 428 0 451 349 8 5 chr9 135753022 135753058 -6518386 + MIR SINE MIR 149 183 -66 422 271 25 16 chr9 135753596 135753718 -6517726 - MIR3 SINE MIR -1 207 85 674 249 30 27 chr9 135753824 135754067 -6517377 - MIR SINE MIR -14 248 6 320 208 226 19 chr9 135754214 135754320 -6517124 + L2 LINE L2 3139 3266 -6 917 274 4 9 chr9 135754550 135754780 -6516664 - MIR SINE MIR -3 259 31 215 355 104 38 chr9 135755847 135756318 -6515126 - L3 LINE CR1 -750 827 326 759 249 64 91 chr9 135756626 135757143 -6514301 - L1MC5 LINE L1 -31 7930 7428 283 138 15 31 chr9 135757546 135757611 -6513833 + GA-rich Low_complexity Low_complexity 4 67 0 934 184 0 12 chr9 135757613 135757758 -6513686 + FRAM SINE Alu 1 145 -157 432 37 0 0 chr9 135757758 135757812 -6513632 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 934 184 0 12 chr9 135757812 135757834 -6513610 + FRAM SINE Alu 145 166 0 1545 177 37 7 chr9 135757945 135758216 -6513228 + AluJb SINE Alu 12 290 -22 1417 233 41 49 chr9 135760510 135760956 -6510488 - MER113 DNA MER1_type? -3 518 75 2231 107 0 10 chr9 135760956 135761254 -6510190 + AluSx SINE Alu 5 299 -13 1417 233 41 49 chr9 135761254 135761297 -6510147 - MER113 DNA MER1_type? -446 75 33 1678 162 46 8 chr9 135762156 135762263 -6509181 - L1MB3 LINE L1 0 6183 6081 2323 109 0 0 chr9 135762263 135762565 -6508879 - AluSx SINE Alu -10 302 1 1678 162 46 8 chr9 135762565 135762828 -6508616 - L1MB3 LINE L1 -102 6081 5799 1733 176 27 20 chr9 135763488 135763638 -6507806 + MLT1B LTR MaLR 29 176 -220 2178 111 10 0 chr9 135763638 135763927 -6507517 + AluSx SINE Alu 1 292 -20 1733 176 27 20 chr9 135763927 135764129 -6507315 + MLT1B LTR MaLR 176 388 -8 280 276 207 21 chr9 135764411 135764556 -6506888 + MIR SINE MIR 79 250 -12 414 267 111 18 chr9 135764574 135764791 -6506653 - L2 LINE L2 -2 3311 3075 181 250 50 0 chr9 135764895 135764955 -6506489 - L2 LINE L2 -3186 128 66 204 302 0 0 chr9 135765098 135765151 -6506293 + (TAG)n Simple_repeat Simple_repeat 1 53 0 722 164 0 164 chr9 135766166 135766250 -6505194 - MLT1D LTR MaLR 0 505 472 2164 95 25 0 chr9 135766250 135766544 -6504900 + AluSx SINE Alu 1 301 0 722 164 0 164 chr9 135766544 135766665 -6504779 - MLT1D LTR MaLR -33 472 333 243 272 53 35 chr9 135767264 135767378 -6504066 + MLT1H LTR MaLR 423 538 -11 497 200 0 52 chr9 135767958 135768037 -6503407 - MER63 DNA MER1_type 0 1060 987 3368 138 14 32 chr9 135768037 135768601 -6502843 + MLT2B3 LTR ERVL 1 554 0 497 200 0 52 chr9 135768601 135768636 -6502808 - MER63 DNA MER1_type -73 987 952 1751 196 27 7 chr9 135768637 135768938 -6502506 + AluJb SINE Alu 1 307 -5 416 113 0 50 chr9 135769094 135769174 -6502270 - AluS SINE Alu -11 301 226 2192 112 10 0 chr9 135769224 135769520 -6501924 - AluSq SINE Alu -14 299 1 236 309 53 0 chr9 135769637 135769731 -6501713 + MIR3 SINE MIR 78 176 -32 2093 98 3 21 chr9 135771378 135771689 -6499755 - AluSx SINE Alu 0 306 1 518 285 15 30 chr9 135771816 135772022 -6499422 + MIR SINE MIR 42 242 -20 183 298 24 24 chr9 135772149 135772233 -6499211 + L2 LINE L2 3162 3245 -27 * 211 203 85 17 chr9 135772224 135772283 -6499161 - MIR SINE MIR -36 226 164 1692 182 10 10 chr9 135772416 135772707 -6498737 + AluJb SINE Alu 1 291 -21 195 129 0 0 chr9 135772707 135772738 -6498706 + (GGGAA)n Simple_repeat Simple_repeat 1 31 0 725 148 0 8 chr9 135772840 135772962 -6498482 + AluSp/q SINE Alu 186 306 -7 414 328 73 50 chr9 135773086 135773123 -6498321 + L2 LINE L2 2855 2890 -382 2325 175 34 6 chr9 135773123 135773591 -6497853 - L1MB5 LINE L1 -9 6165 5685 414 328 73 50 chr9 135773591 135773952 -6497492 + L2 LINE L2 2890 3262 -10 2338 115 0 3 chr9 135774158 135774472 -6496972 + AluSq SINE Alu 1 313 0 236 278 256 0 chr9 135775363 135775453 -6495991 + L2 LINE L2 3195 3307 -6 828 40 44 45 chr9 135775765 135776023 -6495421 + (CA)n Simple_repeat Simple_repeat 1 257 0 350 164 15 0 chr9 135776117 135776184 -6495260 - MIR SINE MIR -74 134 67 2433 105 0 0 chr9 135777194 135777500 -6493944 - AluSq SINE Alu -7 306 1 825 286 56 38 chr9 135777504 135777948 -6493496 - L1MC4 LINE L1 0 8042 7591 310 250 11 43 chr9 135777951 135778043 -6493401 + L1MC4 LINE L1 6614 6702 -1340 * 331 159 43 29 chr9 135778024 135778093 -6493351 - L1MCa LINE L1 -4362 2064 1995 * 370 295 0 32 chr9 135778043 135778138 -6493306 + L1MC4 LINE L1 6612 6703 -1339 1069 173 32 5 chr9 135778139 135778359 -6493085 - L1MD3 LINE L1 -13 7982 7757 447 263 153 0 chr9 135778435 135778572 -6492872 - MIR SINE MIR -74 188 31 189 94 0 0 chr9 135778600 135778632 -6492812 + (TC)n Simple_repeat Simple_repeat 1 32 0 2312 102 7 0 chr9 135778819 135779124 -6492320 + AluSx SINE Alu 1 307 -5 470 322 29 10 chr9 135779153 135779361 -6492083 - MIR SINE MIR -48 214 3 304 184 114 113 chr9 135780130 135780215 -6491229 + MIR SINE MIR 39 122 -140 2152 128 3 3 chr9 135780215 135780519 -6490925 - AluSq SINE Alu -9 304 1 304 184 114 113 chr9 135780519 135780627 -6490817 + MIR SINE MIR 122 247 -15 215 61 30 0 chr9 135780687 135780720 -6490724 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 2050 126 43 7 chr9 135781025 135781326 -6490118 - AluJb SINE Alu 0 312 1 547 257 57 23 chr9 135781334 135781509 -6489935 - MIR SINE MIR -70 192 12 287 25 25 0 chr9 135782494 135782534 -6488910 + (GA)n Simple_repeat Simple_repeat 1 41 0 1819 150 0 34 chr9 135782573 135782890 -6488554 - AluJo SINE Alu 0 307 1 298 277 134 0 chr9 135783026 135783138 -6488306 - L2 LINE L2 -2 3311 3185 326 247 0 0 chr9 135783956 135784029 -6487415 + L2 LINE L2 3241 3313 0 1670 161 39 29 chr9 135784141 135784462 -6486982 + AluJb SINE Alu 1 324 0 235 211 171 0 chr9 135784655 135784731 -6486713 - MER117 DNA MER1_type -54 143 55 330 329 27 34 chr9 135785929 135786075 -6485369 - MIR3 SINE MIR -10 198 54 313 265 154 6 chr9 135786100 135786255 -6485189 + MIR SINE MIR 16 206 -2 496 258 131 20 chr9 135786611 135786809 -6484635 - MIR SINE MIR -41 221 2 483 210 83 7 chr9 135788887 135789035 -6482409 - MIR SINE MIR 0 262 102 209 189 0 0 chr9 135789255 135789292 -6482152 + L2 LINE L2 3264 3300 -13 190 283 91 40 chr9 135789331 135789430 -6482014 + L2 LINE L2 3146 3249 -23 2141 82 39 26 chr9 135789997 135790302 -6481142 - AluSx SINE Alu -3 309 1 202 355 109 22 chr9 135790421 135790604 -6480840 + MIR SINE MIR 37 235 -27 311 326 14 50 chr9 135790612 135790753 -6480691 - MIR SINE MIR -28 234 99 276 312 81 36 chr9 135790813 135790952 -6480492 - MIR3 SINE MIR -18 190 57 866 278 42 4 chr9 135790972 135791213 -6480231 - MIR SINE MIR -11 251 2 200 248 107 44 chr9 135791612 135791746 -6479698 + MIR SINE MIR 3 121 -87 180 0 0 0 chr9 135791975 135791995 -6479449 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 459 286 29 7 chr9 135792753 135792893 -6478551 - MIR3 SINE MIR -50 158 16 194 299 10 48 chr9 135793539 135793668 -6477776 - MIR SINE MIR -66 142 30 * 457 283 115 24 chr9 135793624 135793841 -6477603 + MIR SINE MIR 20 262 0 21 0 0 0 chr9 135795139 135795160 -6476284 + GC_rich Low_complexity Low_complexity 1 21 0 40 79 0 0 chr9 135795294 135795383 -6476061 + GC_rich Low_complexity Low_complexity 1 89 0 213 132 0 0 chr9 135795406 135795444 -6476000 + (CGG)n Simple_repeat Simple_repeat 1 38 0 516 106 0 0 chr9 135795865 135795959 -6475485 + (TG)n Simple_repeat Simple_repeat 2 95 0 21 0 0 0 chr9 135796211 135796232 -6475212 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 135796602 135796624 -6474820 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 135797141 135797162 -6474282 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr9 135798221 135798264 -6473180 + AT_rich Low_complexity Low_complexity 1 43 0 526 296 13 25 chr9 135800845 135801004 -6470440 + MIR SINE MIR 105 261 -1 344 287 35 56 chr9 135801000 135801143 -6470301 - MIR SINE MIR -110 152 13 * 195 100 0 0 chr9 135801175 135801205 -6470239 + (CAGGG)n Simple_repeat Simple_repeat 4 33 0 213 121 0 0 chr9 135801470 135801503 -6469941 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 226 305 110 0 chr9 135803711 135803793 -6467651 + MER5A DNA MER1_type 22 112 -77 452 309 40 64 chr9 135804096 135804345 -6467099 + MIR SINE MIR 20 262 0 198 298 48 12 chr9 135804522 135804606 -6466838 + MIR SINE MIR 104 190 -72 260 235 11 169 chr9 135805046 135805229 -6466215 + L2 LINE L2 2932 3085 -187 268 239 312 7 chr9 135805302 135805440 -6466004 + MIR SINE MIR 80 259 -3 414 260 130 0 chr9 135805462 135805585 -6465859 + L2 LINE L2 3134 3272 0 2448 72 0 0 chr9 135805648 135805954 -6465490 - AluY SINE Alu -5 306 1 428 243 5 74 chr9 135806563 135806804 -6464640 + (CGGA)n Simple_repeat Simple_repeat 1 224 0 195 129 0 0 chr9 135806825 135806856 -6464588 + (CGGA)n Simple_repeat Simple_repeat 3 33 0 256 283 0 33 chr9 135806875 135806967 -6464477 + (CGGA)n Simple_repeat Simple_repeat 1 89 0 180 176 0 0 chr9 135806985 135807019 -6464425 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 180 111 0 0 chr9 135807128 135807155 -6464289 + (CGGA)n Simple_repeat Simple_repeat 3 29 0 201 74 0 0 chr9 135807236 135807263 -6464181 + (CGGA)n Simple_repeat Simple_repeat 3 29 0 180 111 0 0 chr9 135807286 135807313 -6464131 + (CGGA)n Simple_repeat Simple_repeat 3 29 0 305 377 26 21 chr9 135807386 135807563 -6463881 + MIR SINE MIR 71 251 -11 2224 88 0 7 chr9 135807563 135807858 -6463586 + AluSx SINE Alu 1 293 -19 305 377 26 21 chr9 135807858 135807871 -6463573 + MIR SINE MIR 251 262 0 259 122 0 0 chr9 135808935 135808984 -6462460 - L1MB5 LINE L1 0 6174 6126 932 120 0 0 chr9 135808996 135809121 -6462323 + FLAM_C SINE Alu 5 129 -4 3265 208 27 21 chr9 135809134 135809881 -6461563 - L1MB5 LINE L1 -26 6148 5398 2007 134 10 16 chr9 135809899 135810212 -6461232 - AluSx SINE Alu -1 311 1 1564 201 3 6 chr9 135810214 135810567 -6460877 - L1MB5 LINE L1 -985 5161 4810 219 36 0 0 chr9 135810571 135810599 -6460845 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2151 85 4 0 chr9 135810601 135810882 -6460562 - AluSx SINE Alu -30 282 1 243 299 10 77 chr9 135810906 135811063 -6460381 - MIR SINE MIR -50 212 70 211 215 190 13 chr9 135811263 135811342 -6460102 + L2 LINE L2 3164 3256 -16 1970 117 0 68 chr9 135811583 135811908 -6459536 + AluSx SINE Alu 1 303 -9 284 277 12 21 chr9 135811924 135812032 -6459412 - MIR3 SINE MIR -54 154 46 264 291 100 27 chr9 135812650 135812760 -6458684 - MIR SINE MIR -70 138 21 297 297 69 0 chr9 135813480 135813581 -6457863 + MIR3 SINE MIR 68 175 -33 183 186 0 0 chr9 135813604 135813647 -6457797 + GA-rich Low_complexity Low_complexity 2 44 0 1584 135 4 0 chr9 135814013 135814243 -6457201 - AluJb SINE Alu -16 296 66 2206 105 20 0 chr9 135814244 135814540 -6456904 - AluSx SINE Alu -10 302 1 630 315 58 12 chr9 135814584 135814825 -6456619 - MIR SINE MIR -3 259 8 485 280 42 0 chr9 135815757 135815925 -6455519 + MER5B DNA MER1_type 4 178 0 185 348 76 0 chr9 135816588 135816680 -6454764 + MIR SINE MIR 74 172 -90 207 204 0 0 chr9 135816753 135816807 -6454637 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 2172 92 7 0 chr9 135817567 135817859 -6453585 + AluSp SINE Alu 1 294 -19 208 275 0 59 chr9 135818543 135818647 -6452797 + CT-rich Low_complexity Low_complexity 1 97 0 540 106 0 0 chr9 135818748 135818833 -6452611 + (GGA)n Simple_repeat Simple_repeat 1 85 0 229 255 0 0 chr9 135819078 135819129 -6452315 + L3 LINE CR1 1416 1466 -111 194 346 56 37 chr9 135819755 135819862 -6451582 - L2 LINE L2 -18 3254 3146 378 175 0 0 chr9 135820477 135820557 -6450887 + GA-rich Low_complexity Low_complexity 2 81 0 321 280 85 8 chr9 135820804 135820922 -6450522 - MIR3 SINE MIR -14 194 68 251 293 12 0 chr9 135821384 135821466 -6449978 + MIR SINE MIR 47 129 -133 266 314 110 8 chr9 135821730 135821848 -6449596 - L2 LINE L2 -1 3271 3142 233 204 0 0 chr9 135821920 135821974 -6449470 - MER34 LTR ERV1 -72 470 417 1250 135 16 0 chr9 135821990 135822182 -6449262 - AluJb SINE Alu 0 312 118 647 223 51 65 chr9 135822233 135822569 -6448875 - MER39 LTR ERV1 -126 581 55 2015 110 3 30 chr9 135822573 135822872 -6448572 - AluSx SINE Alu -20 292 2 2365 52 0 0 chr9 135823103 135823393 -6448051 + AluY SINE Alu 21 310 -1 292 356 23 8 chr9 135824182 135824314 -6447130 + MIR SINE MIR 119 252 -10 279 275 27 34 chr9 135824536 135824660 -6446784 - MIR SINE MIR -58 150 28 2276 81 3 7 chr9 135824692 135825002 -6446442 - AluYb8 SINE Alu -9 309 1 2215 108 0 0 chr9 135825442 135825759 -6445685 + AluSx SINE Alu 3 312 0 239 234 0 0 chr9 135825887 135825934 -6445510 + GA-rich Low_complexity Low_complexity 2 48 0 22 0 0 0 chr9 135826054 135826076 -6445368 + GC_rich Low_complexity Low_complexity 1 22 0 1818 186 17 59 chr9 135826867 135827271 -6444173 - MLT1B LTR MaLR 0 390 4 203 247 24 5 chr9 135827568 135827635 -6443809 - MIR SINE MIR -104 104 59 233 53 53 0 chr9 135828219 135828257 -6443187 + CT-rich Low_complexity Low_complexity 1 40 0 727 128 13 54 chr9 135828257 135828406 -6443038 - L1MC2 LINE L1 -10 6334 6192 2358 51 0 63 chr9 135828426 135828758 -6442686 - AluY SINE Alu 0 311 1 1595 178 7 11 chr9 135828772 135829058 -6442386 - AluJo SINE Alu -22 290 6 829 179 8 0 chr9 135829058 135829192 -6442252 - AluJb SINE Alu -167 145 11 869 157 0 131 chr9 135829192 135829309 -6442135 - L1MC2 LINE L1 -146 6198 6126 2333 80 3 6 chr9 135829309 135829623 -6441821 - AluSp SINE Alu 0 313 1 869 157 0 131 chr9 135829623 135829741 -6441703 - L1MC2 LINE L1 -218 6126 5994 1349 237 96 5 chr9 135829796 135830193 -6441251 - MER21B LTR ERV1 -58 805 373 2161 98 3 13 chr9 135830239 135830554 -6440890 + AluSx SINE Alu 1 312 0 2800 221 66 19 chr9 135832401 135832975 -6438469 - MER77 LTR ERV1 -4 601 1 456 263 8 23 chr9 135833167 135833300 -6438144 + MIR SINE MIR 130 260 -2 184 297 54 14 chr9 135833931 135834005 -6437439 + L3 LINE CR1 1137 1213 -364 210 247 0 129 chr9 135834813 135834906 -6436538 - MIR SINE MIR 0 262 182 237 376 37 9 chr9 135835652 135835761 -6435683 - MIR SINE MIR -97 165 54 301 345 48 14 chr9 135835840 135835985 -6435459 - MER5A DNA MER1_type -1 188 39 421 274 27 27 chr9 135835995 135836141 -6435303 + MIR SINE MIR 79 224 -38 1067 161 0 0 chr9 135836322 135836490 -6434954 + AluJb SINE Alu 136 303 -9 432 318 24 6 chr9 135836614 135836784 -6434660 - Charlie8 DNA MER1_type -2231 186 14 245 337 45 0 chr9 135837041 135837130 -6434314 + L3 LINE CR1 1424 1516 -61 468 261 127 0 chr9 135837768 135837910 -6433534 - MIR SINE MIR 0 262 103 868 146 0 8 chr9 135837923 135838053 -6433391 + FLAM_C SINE Alu 1 129 -4 3864 171 39 15 chr9 135838064 135838728 -6432716 + L1MB3 LINE L1 5454 6138 -45 2172 112 0 0 chr9 135838728 135839022 -6432422 + AluSx SINE Alu 1 294 -18 3864 171 39 15 chr9 135839022 135839069 -6432375 + L1MB3 LINE L1 6138 6182 -1 380 242 141 0 chr9 135839100 135839199 -6432245 + MIR SINE MIR 38 150 -112 2380 90 0 0 chr9 135839514 135839824 -6431620 + AluSx SINE Alu 1 310 -2 1328 229 121 62 chr9 135840368 135840805 -6430639 - MLT1C LTR MaLR -4 463 1 1981 140 0 0 chr9 135840951 135841237 -6430207 + AluJb SINE Alu 1 286 -26 1093 304 137 9 chr9 135841867 135842409 -6429035 - L1ME1 LINE L1 -2 6164 5554 425 306 76 47 chr9 135842618 135843066 -6428378 - L2 LINE L2 -1257 2057 1597 295 175 62 20 chr9 135843296 135843390 -6428054 + MIR SINE MIR 40 145 -63 433 285 71 106 chr9 135844715 135845043 -6426401 + L2 LINE L2 2944 3261 -11 294 87 0 0 chr9 135845043 135845089 -6426355 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 433 285 71 106 chr9 135845089 135845100 -6426344 + L2 LINE L2 3261 3271 -1 1798 123 28 68 chr9 135846166 135846491 -6424953 + AluSx SINE Alu 1 312 0 893 121 15 121 chr9 135847854 135848004 -6423440 - MER53 DNA DNA -4 185 61 1712 137 0 75 chr9 135848004 135848325 -6423119 - AluJb SINE Alu -15 297 1 893 121 15 121 chr9 135848325 135848380 -6423064 - MER53 DNA DNA -128 61 2 2128 130 3 0 chr9 135848428 135848736 -6422708 + AluSx SINE Alu 1 309 -3 224 354 12 0 chr9 135849026 135849108 -6422336 - MIR SINE MIR 0 262 180 259 204 74 0 chr9 135849365 135849419 -6422025 - L2 LINE L2 -5 3267 3210 311 262 83 0 chr9 135849424 135849508 -6421936 - MIR SINE MIR -81 127 37 306 0 0 0 chr9 135849511 135849545 -6421899 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 474 18 0 0 chr9 135849544 135849599 -6421845 + (TG)n Simple_repeat Simple_repeat 2 56 0 292 294 209 5 chr9 135850161 135850362 -6421082 + MIR SINE MIR 8 249 -13 579 262 34 0 chr9 135850596 135850745 -6420699 + MIR SINE MIR 74 227 -35 562 240 35 53 chr9 135850782 135850953 -6420491 - MIR SINE MIR -31 231 64 249 286 55 11 chr9 135851170 135851261 -6420183 - MIR SINE MIR -108 154 60 769 327 5 0 chr9 135851340 135851554 -6419890 + MIR SINE MIR 29 243 -19 2339 92 0 6 chr9 135851611 135851926 -6419518 - AluSq SINE Alu 0 313 1 775 211 7 0 chr9 135852053 135852200 -6419244 - L1MB7 LINE L1 -11 6173 6026 1217 111 6 0 chr9 135852200 135852372 -6419072 + AluSg/x SINE Alu 137 309 -3 2882 179 42 29 chr9 135852375 135852420 -6419024 - L1MB7 LINE L1 -230 5948 5905 2115 147 0 0 chr9 135852420 135852732 -6418712 + AluSx SINE Alu 1 312 0 2882 179 42 29 chr9 135852732 135853580 -6417864 - L1MB7 LINE L1 -273 5905 5036 1916 121 50 7 chr9 135853580 135853877 -6417567 - AluSx SINE Alu -2 310 1 2882 179 42 29 chr9 135853877 135853988 -6417456 - L1MB7 LINE L1 -1142 5036 4928 25 83 0 0 chr9 135853989 135854049 -6417395 + AT_rich Low_complexity Low_complexity 1 60 0 330 326 32 57 chr9 135854237 135854519 -6416925 - L2 LINE L2 -179 3093 2819 411 192 0 0 chr9 135855227 135855305 -6416139 + MER103 DNA DNA 35 112 -54 1821 151 0 26 chr9 135855953 135856257 -6415187 + AluJb SINE Alu 1 296 -16 611 146 0 0 chr9 135856724 135856813 -6414631 + AluSg/x SINE Alu 208 296 -16 287 314 125 23 chr9 135856848 135857199 -6414245 + L2 LINE L2 2570 3044 -228 1460 158 112 6 chr9 135857290 135857637 -6413807 - L1MC2 LINE L1 -9 6335 5952 273 330 19 19 chr9 135857637 135857743 -6413701 + L2 LINE L2 3188 3293 -20 247 302 0 43 chr9 135857743 135857882 -6413562 - L1MC4a LINE L1 -1866 5942 5810 1610 232 139 70 chr9 135857882 135858054 -6413390 - L1MC5 LINE L1 -36 7925 7766 2018 116 20 0 chr9 135858054 135858346 -6413098 - AluSx SINE Alu -14 298 1 414 42 14 28 chr9 135858347 135858418 -6413026 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 1763 174 4 0 chr9 135858418 135858699 -6412745 - AluJo SINE Alu -30 282 1 1610 232 139 70 chr9 135858699 135859388 -6412056 - L1MC5 LINE L1 -194 7767 7002 201 345 0 0 chr9 135859626 135859684 -6411760 + L3 LINE CR1 968 1025 -552 409 373 0 0 chr9 135860227 135860396 -6411048 + (CA)n Simple_repeat Simple_repeat 1 169 0 302 315 73 18 chr9 135861068 135861233 -6410211 - MIR SINE MIR -32 230 57 1959 157 0 3 chr9 135861688 135861987 -6409457 - AluJb SINE Alu -14 298 1 350 296 43 0 chr9 135863123 135863238 -6408206 + MIR SINE MIR 123 242 -20 385 279 54 8 chr9 135863394 135863523 -6407921 + MIR SINE MIR 66 200 -62 202 234 16 31 chr9 135863863 135863927 -6407517 + (CACCC)n Simple_repeat Simple_repeat 1 63 0 342 194 0 0 chr9 135866407 135866479 -6404965 + (CA)n Simple_repeat Simple_repeat 1 72 0 235 146 0 0 chr9 135866977 135867018 -6404426 + L1MB7 LINE L1 6134 6174 -10 192 294 0 0 chr9 135867039 135867090 -6404354 - MIR SINE MIR -165 97 47 2233 99 3 3 chr9 135867154 135867457 -6403987 - AluSq SINE Alu -10 303 1 301 231 13 0 chr9 135871567 135871645 -6399799 - MER96 DNA MER1_type? -2 173 95 214 316 132 0 chr9 135872487 135872563 -6398881 + MER5B DNA MER1_type 25 110 -68 349 253 91 0 chr9 135872863 135872962 -6398482 + MIR3 SINE MIR 78 185 -23 420 221 0 82 chr9 135874215 135874410 -6397034 + (CGGGG)n Simple_repeat Simple_repeat 1 179 0 272 263 212 2 chr9 135874666 135874827 -6396617 - L2 LINE L2 -269 3003 2811 31 0 0 0 chr9 135875156 135875187 -6396257 + GC_rich Low_complexity Low_complexity 1 31 0 23 78 0 0 chr9 135875273 135875324 -6396120 + GC_rich Low_complexity Low_complexity 1 51 0 25 31 0 0 chr9 135875367 135875399 -6396045 + GC_rich Low_complexity Low_complexity 1 32 0 180 200 0 0 chr9 135875496 135875536 -6395908 + T-rich Low_complexity Low_complexity 1 40 0 350 286 60 22 chr9 135877065 135877247 -6394197 + MLT1J LTR MaLR 26 214 -297 865 154 0 0 chr9 135877468 135877604 -6393840 - FLAM_C SINE Alu -2 141 6 500 314 24 33 chr9 135878697 135878747 -6392697 - MIR SINE MIR -48 214 165 719 242 76 38 chr9 135878747 135878958 -6392486 - MER20 DNA MER1_type 0 219 1 500 314 24 33 chr9 135878958 135879117 -6392327 - MIR SINE MIR -97 165 7 355 216 21 62 chr9 135879583 135879680 -6391764 - L1ME4a LINE L1 -34 6087 5995 1834 167 0 3 chr9 135879681 135879980 -6391464 - AluJb SINE Alu -13 299 2 2284 89 3 0 chr9 135880326 135880629 -6390815 + AluSq SINE Alu 8 311 -2 1014 130 12 19 chr9 135880630 135880791 -6390653 + AluSq SINE Alu 135 294 -19 2303 104 3 0 chr9 135880792 135881100 -6390344 + AluSp SINE Alu 1 309 -4 261 303 0 11 chr9 135881330 135881419 -6390025 - MIR SINE MIR -126 136 49 24 20 0 60 chr9 135881450 135881500 -6389944 + AT_rich Low_complexity Low_complexity 1 47 0 2168 125 0 3 chr9 135881600 135881913 -6389531 + AluSq SINE Alu 1 312 -1 2244 94 7 0 chr9 135881922 135882221 -6389223 + AluSx SINE Alu 1 301 -11 799 313 26 15 chr9 135882587 135882849 -6388595 + MIR SINE MIR 3 261 -1 252 106 106 0 chr9 135882968 135883015 -6388429 - L2 LINE L2 -75 3197 3146 528 246 111 15 chr9 135883719 135883918 -6387526 - MER115 DNA AcHobo -6 687 470 1734 160 83 0 chr9 135884414 135884702 -6386742 - MER1B DNA MER1_type -27 312 1 310 280 40 0 chr9 135884707 135884807 -6386637 - Charlie8 DNA MER1_type -2268 149 46 1147 160 19 122 chr9 135884807 135885126 -6386318 + L1MB5 LINE L1 5587 5872 -302 662 82 0 0 chr9 135885128 135885213 -6386231 + AluSx SINE Alu 2 86 -227 7316 87 19 20 chr9 135885213 135886221 -6385223 - LTR13 LTR ERVK 0 1007 1 1581 101 0 5 chr9 135886222 135886430 -6385014 + AluSx SINE Alu 80 286 -24 817 184 13 0 chr9 135886443 135886601 -6384843 + L1MB5 LINE L1 5864 6023 -151 1304 130 0 5 chr9 135886601 135886785 -6384659 + AluSp SINE Alu 125 307 -6 675 307 84 6 chr9 135886816 135887161 -6384283 + L1MC4 LINE L1 7197 7568 -474 411 267 37 143 chr9 135887220 135887378 -6384066 + L1MC4 LINE L1 7560 7733 -309 2441 97 0 0 chr9 135887378 135887688 -6383756 + AluSg SINE Alu 1 310 0 411 267 37 143 chr9 135887688 135887818 -6383626 + L1MC4 LINE L1 7733 7801 -241 2533 46 0 10 chr9 135887818 135888125 -6383319 + AluY SINE Alu 1 304 -7 411 267 37 143 chr9 135888125 135888213 -6383231 + L1MC4 LINE L1 7801 7897 -145 370 102 17 0 chr9 135888229 135888288 -6383156 + FLAM SINE Alu 73 132 -1 336 212 60 0 chr9 135888300 135888401 -6383043 + L1MC4 LINE L1 7879 8042 0 2042 148 0 0 chr9 135888413 135888716 -6382728 + AluSx SINE Alu 1 303 -9 1262 119 0 0 chr9 135888716 135888892 -6382552 + AluSg/x SINE Alu 132 307 -3 252 269 21 0 chr9 135888960 135889053 -6382391 + L1M4 LINE L1 4951 5045 -1101 1254 122 11 0 chr9 135889073 135889253 -6382191 + AluSg/x SINE Alu 120 301 -9 2313 112 0 0 chr9 135889363 135889666 -6381778 - AluSg SINE Alu -7 303 1 790 219 63 10 chr9 135889794 135889999 -6381445 - MER20 DNA MER1_type -1 218 3 2077 105 0 33 chr9 135890007 135890311 -6381133 + AluSx SINE Alu 5 298 -14 238 258 65 37 chr9 135890321 135890429 -6381015 + L1ME3A LINE L1 5832 5940 -229 384 127 0 0 chr9 135890670 135890763 -6380681 + AluS SINE Alu 223 315 0 24 32 0 0 chr9 135891592 135891623 -6379821 + AT_rich Low_complexity Low_complexity 1 31 0 2436 88 0 0 chr9 135891630 135891936 -6379508 + AluSg SINE Alu 1 306 -4 2426 84 0 0 chr9 135892762 135893071 -6378373 + AluSx SINE Alu 1 309 -3 291 173 24 126 chr9 135893081 135893149 -6378295 + MER5B DNA MER1_type 60 111 -67 2296 82 12 35 chr9 135893149 135893468 -6377976 - AluSx SINE Alu 0 312 1 291 173 24 126 chr9 135893468 135893526 -6377918 + MER5B DNA MER1_type 111 173 -5 2535 62 7 0 chr9 135898349 135898653 -6372791 - AluY SINE Alu -5 306 1 773 214 56 17 chr9 135898703 135898881 -6372563 - MER3 DNA MER1_type -18 191 7 473 115 26 0 chr9 135899320 135899398 -6372046 + MIR SINE MIR 72 151 -111 290 209 0 15 chr9 135899401 135899468 -6371976 + HsTC2 DNA Tc2 4 69 -1829 1210 224 186 36 chr9 135899494 135899619 -6371825 + HsTC2 DNA Tc2 1149 1254 -644 2128 129 0 16 chr9 135899619 135899922 -6371522 + AluSx SINE Alu 1 298 -14 1210 224 186 36 chr9 135899922 135900297 -6371147 + HsTC2 DNA Tc2 1254 1900 2 474 184 39 101 chr9 135901094 135901273 -6370171 + Charlie2 DNA MER1_type 2241 2408 -454 410 247 13 4 chr9 135901278 135901390 -6370054 - L1MD2 LINE L1 0 7785 6247 1194 162 64 0 chr9 135901404 135901608 -6369836 + AluJb SINE Alu 44 260 -52 495 148 87 67 chr9 135901790 135901939 -6369505 + Charlie2 DNA MER1_type 2657 2808 -54 322 266 18 37 chr9 135902403 135902512 -6368932 - MIR SINE MIR 0 262 156 1718 131 0 4 chr9 135904411 135904655 -6366789 + AluJb SINE Alu 1 243 -69 2399 52 42 0 chr9 135905010 135905299 -6366145 - AluY SINE Alu -10 301 1 1263 203 80 11 chr9 135905302 135905578 -6365866 - AluJo SINE Alu -17 295 1 521 176 93 19 chr9 135905627 135905735 -6365709 - FLAM_A SINE Alu -17 116 1 937 207 63 0 chr9 135905777 135905999 -6365445 - L1MB8 LINE L1 -175 6003 5768 282 200 0 0 chr9 135906001 135906051 -6365393 + L1M4 LINE L1 4542 4591 -1555 598 202 109 0 chr9 135906094 135906213 -6365231 + FLAM_C SINE Alu 2 133 -10 3631 221 76 28 chr9 135906237 135906294 -6365150 - L1MB8 LINE L1 -1599 4547 4494 2267 111 0 3 chr9 135906294 135906592 -6364852 - AluSx SINE Alu -15 297 1 3631 221 76 28 chr9 135906592 135907563 -6363881 - L1MB8 LINE L1 -1652 4494 3461 2344 87 0 22 chr9 135907563 135907875 -6363569 - AluSx SINE Alu -7 305 1 3631 221 76 28 chr9 135907875 135907931 -6363513 - L1MB8 LINE L1 -2685 3461 3409 185 333 12 0 chr9 135908915 135908999 -6362445 - MIR SINE MIR -4 258 174 314 322 83 60 chr9 135909345 135909777 -6361667 + L2 LINE L2 176 617 -2697 207 200 50 0 chr9 135909946 135909986 -6361458 + L2 LINE L2 3129 3170 -102 1973 130 0 35 chr9 135910626 135910942 -6360502 + AluJb SINE Alu 1 305 -7 385 200 10 40 chr9 135910948 135911048 -6360396 + L1ME4a LINE L1 5974 6070 -51 1250 122 0 6 chr9 135911572 135911752 -6359692 - AluSg/x SINE Alu 0 312 134 205 306 231 0 chr9 135911986 135912094 -6359350 - L2 LINE L2 -1 3312 3180 532 189 95 88 chr9 135912100 135912248 -6359196 - MER46A DNA MER2_type -87 149 1 285 210 0 16 chr9 135912250 135912312 -6359132 + MER112 DNA MER1_type 199 259 -1 1244 39 7 0 chr9 135912402 135912555 -6358889 + L1PA5 LINE L1 6000 6153 -1 203 200 0 22 chr9 135913052 135913097 -6358347 + (CATATA)n Simple_repeat Simple_repeat 6 49 0 518 217 17 0 chr9 135913125 135913240 -6358204 + L2 LINE L2 3188 3304 -9 1887 117 71 0 chr9 135914886 135915168 -6356276 + AluSx SINE Alu 1 302 -10 1733 157 29 32 chr9 135915407 135915720 -6355724 - AluJb SINE Alu 0 312 1 2534 59 3 0 chr9 135918001 135918305 -6353139 - AluY SINE Alu -6 305 1 1591 131 120 25 chr9 135918593 135918728 -6352716 + AluSx SINE Alu 1 122 -190 2429 84 0 0 chr9 135918728 135919027 -6352417 + AluSc SINE Alu 1 299 -10 2340 96 0 7 chr9 135919029 135919331 -6352113 + AluSc SINE Alu 1 300 -9 1591 131 120 25 chr9 135919331 135919466 -6351978 + AluSx SINE Alu 122 300 -12 22 35 0 0 chr9 135919493 135919522 -6351922 + AT_rich Low_complexity Low_complexity 1 29 0 471 274 169 69 chr9 135919866 135920227 -6351217 + MLT1K LTR MaLR 92 488 -100 1030 164 5 75 chr9 135920308 135920331 -6351113 + MER58A DNA MER1_type 16 39 -2381 1621 184 3 26 chr9 135920331 135920635 -6350809 + AluJo SINE Alu 1 297 -15 1030 164 5 75 chr9 135920635 135920824 -6350620 + MER58A DNA MER1_type 39 213 -11 189 222 0 0 chr9 135920856 135920919 -6350525 + A-rich Low_complexity Low_complexity 1 63 0 1928 151 0 7 chr9 135921020 135921312 -6350132 + AluSx SINE Alu 1 290 -22 22 35 0 0 chr9 135921481 135921510 -6349934 + AT_rich Low_complexity Low_complexity 1 29 0 2743 151 62 57 chr9 135922155 135922700 -6348744 + LTR14 LTR ERVK 1 548 0 2040 152 0 3 chr9 135923055 135923357 -6348087 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr9 135923391 135923412 -6348032 + AT_rich Low_complexity Low_complexity 1 21 0 2432 101 0 0 chr9 135923423 135923730 -6347714 + AluSg SINE Alu 1 307 -3 1197 192 0 5 chr9 135923741 135923955 -6347489 + AluJb SINE Alu 1 213 -99 243 0 0 0 chr9 135923968 135923995 -6347449 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 220 246 213 41 chr9 135924073 135924195 -6347249 + L2 LINE L2 3168 3310 -3 2545 65 0 0 chr9 135924288 135924594 -6346850 - AluY SINE Alu -5 306 1 743 248 25 5 chr9 135924611 135924809 -6346635 + L1MEd LINE L1 4 205 -5914 262 141 83 62 chr9 135924863 135924977 -6346467 - L1ME3 LINE L1 0 6162 6037 201 211 28 28 chr9 135925119 135925190 -6346254 + (TTTAA)n Simple_repeat Simple_repeat 3 73 0 1374 177 103 7 chr9 135925289 135925571 -6345873 + AluJo SINE Alu 1 309 -3 651 295 117 9 chr9 135925714 135925754 -6345690 + L1M4 LINE L1 3587 3621 -2525 2434 61 0 29 chr9 135925754 135926065 -6345379 - AluY SINE Alu -9 302 1 651 295 117 9 chr9 135926065 135926461 -6344983 + L1M4 LINE L1 3621 4070 -2076 2046 132 7 0 chr9 135926553 135926848 -6344596 - AluSq SINE Alu -16 297 1 2455 49 0 7 chr9 135926869 135927179 -6344265 + AluY SINE Alu 1 308 0 243 135 0 0 chr9 135927184 135927221 -6344223 + MER96 DNA MER1_type? 137 173 -2 229 261 29 0 chr9 135927224 135927293 -6344151 + L1P2 LINE L1 5365 5435 -719 268 271 199 21 chr9 135927326 135927562 -6343882 + L1ME LINE L1 5546 5646 -524 598 249 119 101 chr9 135927712 135928090 -6343354 + MLT1J LTR MaLR 92 476 -35 300 281 0 34 chr9 135928348 135928437 -6343007 + MIR SINE MIR 101 186 -76 318 250 0 13 chr9 135928797 135928873 -6342571 + L2 LINE L2 3234 3308 -5 2171 97 10 36 chr9 135929399 135929708 -6341736 + AluSx SINE Alu 1 301 -11 1910 316 89 14 chr9 135931603 135932523 -6338921 - L2 LINE L2 -97 3216 2234 206 332 64 53 chr9 135932781 135932968 -6338476 + MIR SINE MIR 2 190 -72 2148 95 48 3 chr9 135932989 135933284 -6338160 + AluSq SINE Alu 1 308 -5 2414 57 20 3 chr9 135934217 135934515 -6336929 - AluY SINE Alu -8 303 1 1684 142 148 32 chr9 135934596 135934907 -6336537 + MER7A DNA MER2_type 2 346 0 1906 224 100 62 chr9 135935031 135935205 -6336239 + L1MC/D LINE L1 4443 4609 -1618 2461 76 0 0 chr9 135935205 135935506 -6335938 + AluY SINE Alu 2 302 -9 2597 70 0 6 chr9 135935506 135935821 -6335623 + AluSq SINE Alu 1 313 0 1906 224 100 62 chr9 135935821 135936145 -6335299 + L1MC/D LINE L1 4609 4919 -1308 1676 196 0 16 chr9 135936145 135936451 -6334993 - AluJo SINE Alu -11 301 1 1906 224 100 62 chr9 135936451 135936966 -6334478 + L1MC/D LINE L1 4919 5482 -745 2037 74 63 4 chr9 135936972 135937241 -6334203 + AluSx SINE Alu 5 289 -23 734 139 0 0 chr9 135937681 135937789 -6333655 + AluJb SINE Alu 203 310 -2 1959 147 10 0 chr9 135937844 135938144 -6333300 + AluSx SINE Alu 1 303 -9 2438 62 0 16 chr9 135938196 135938500 -6332944 + AluY SINE Alu 1 299 -12 33 0 0 0 chr9 135938527 135938560 -6332884 + AT_rich Low_complexity Low_complexity 1 33 0 2544 204 32 17 chr9 135938573 135939160 -6332284 + L1MC4a LINE L1 7213 7808 0 329 287 56 21 chr9 135939164 135939307 -6332137 - L1MC4 LINE L1 -1451 6591 6444 1981 117 4 0 chr9 135939374 135939640 -6331804 - AluSx SINE Alu -45 267 1 372 213 182 58 chr9 135939816 135939832 -6331612 - L1M4 LINE L1 -3638 2508 2495 180 0 0 0 chr9 135939832 135939852 -6331592 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 899 199 19 13 chr9 135939852 135940008 -6331436 - FAM SINE Alu -18 157 1 372 213 182 58 chr9 135940008 135940101 -6331343 - L1M4 LINE L1 -3651 2495 2415 2195 105 3 0 chr9 135940101 135940417 -6331027 + AluSx SINE Alu 1 317 0 372 213 182 58 chr9 135940417 135940562 -6330882 - L1M4 LINE L1 -3731 2415 2219 462 258 31 16 chr9 135940566 135940694 -6330750 + L1MC5 LINE L1 6693 6822 -1139 2376 71 7 0 chr9 135940807 135941103 -6330341 - AluSx SINE Alu -12 300 3 1883 189 161 48 chr9 135941103 135941769 -6329675 + L1MC5 LINE L1 6992 7733 -228 645 232 215 62 chr9 135941786 135941999 -6329445 + L1ME LINE L1 4436 4615 -1531 1976 127 34 0 chr9 135941999 135942291 -6329153 + AluSx SINE Alu 6 307 -5 645 232 215 62 chr9 135942291 135942542 -6328902 + L1ME LINE L1 4615 4971 -1175 327 251 185 87 chr9 135942580 135942685 -6328759 - MER58C DNA MER1_type -2206 214 121 786 157 0 57 chr9 135942685 135942825 -6328619 + FLAM_C SINE Alu 2 133 0 327 251 185 87 chr9 135942825 135942914 -6328530 - MER58C DNA MER1_type -2299 121 1 870 272 101 23 chr9 135943167 135943601 -6327843 + L1ME LINE L1 5254 5721 -441 1035 195 58 0 chr9 135943604 135943794 -6327650 + MER68 LTR ERV1 1 201 -361 1368 153 77 15 chr9 135943820 135944081 -6327363 + Tigger2a DNA MER2_type 1 277 -157 182 61 0 30 chr9 135944087 135944120 -6327324 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2049 75 4 8 chr9 135944129 135944395 -6327049 - AluSc SINE Alu -44 265 1 754 178 124 16 chr9 135945145 135945330 -6326114 - MER3 DNA MER1_type 0 209 5 2032 221 45 6 chr9 135945898 135946385 -6325059 + L1MB7 LINE L1 5663 6175 -9 1946 131 6 16 chr9 135947051 135947227 -6324217 - AluSq SINE Alu -4 309 136 2336 76 14 0 chr9 135947227 135947517 -6323927 - AluSp SINE Alu -19 294 1 1946 131 6 16 chr9 135947517 135947652 -6323792 - AluSq SINE Alu -177 136 1 194 0 39 0 chr9 135948006 135948032 -6323412 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2351 93 0 13 chr9 135948035 135948345 -6323099 - AluSx SINE Alu -6 306 1 292 280 162 49 chr9 135948521 135948867 -6322577 + L2 LINE L2 1533 1917 -1397 495 284 37 52 chr9 135949941 135950212 -6321232 - L1M4 LINE L1 -1379 4767 4501 355 276 60 36 chr9 135950555 135950756 -6320688 - L1MEd LINE L1 -3643 2486 2276 872 163 0 15 chr9 135950756 135950891 -6320553 - FLAM_C SINE Alu 0 133 1 355 276 60 36 chr9 135950891 135950939 -6320505 - L1MEd LINE L1 -3853 2276 2231 467 335 124 33 chr9 135951109 135951503 -6319941 - L1MEd LINE L1 -4965 1154 725 748 309 75 62 chr9 135952193 135952740 -6318704 + L2 LINE L2 2408 2961 -353 2287 77 0 59 chr9 135953422 135953745 -6317699 + AluY SINE Alu 1 304 -7 742 221 58 5 chr9 135953854 135954044 -6317400 + HAL1 LINE L1 19 218 -2289 491 231 178 92 chr9 135954082 135954363 -6317081 + HAL1 LINE L1 410 714 -1793 2247 101 0 49 chr9 135954364 135954501 -6316943 + AluSx SINE Alu 1 143 -169 2416 76 6 16 chr9 135954501 135954815 -6316629 + AluY SINE Alu 1 311 0 2247 101 0 49 chr9 135954815 135955004 -6316440 + AluSx SINE Alu 143 311 -1 2309 163 49 36 chr9 135955322 135955795 -6315649 - L1MB7 LINE L1 0 6184 5706 808 257 96 42 chr9 135955795 135956200 -6315244 + HAL1 LINE L1 798 1224 -1283 * 903 254 249 30 chr9 135956170 135956751 -6314693 + HAL1 LINE L1 1625 2390 -117 1824 177 0 7 chr9 135956751 135957061 -6314383 + AluJb SINE Alu 1 308 -4 903 254 249 30 chr9 135957061 135957187 -6314257 + HAL1 LINE L1 2390 2487 -20 468 312 219 13 chr9 135957586 135957897 -6313547 + L2 LINE L2 2897 3271 -1 2478 77 3 0 chr9 135958206 135958516 -6312928 + AluY SINE Alu 1 311 0 214 254 113 0 chr9 135958750 135958776 -6312668 + L2 LINE L2 3197 3219 -94 2147 104 3 23 chr9 135958776 135959084 -6312360 + AluSq SINE Alu 1 302 -11 214 254 113 0 chr9 135959084 135959128 -6312316 + L2 LINE L2 3219 3275 -38 1326 92 0 0 chr9 135959197 135959370 -6312074 - AluSg/x SINE Alu -10 299 127 187 364 10 0 chr9 135965409 135965508 -6305936 + L2 LINE L2 2958 3057 -215 1583 192 20 3 chr9 135965770 135966067 -6305377 + AluJb SINE Alu 1 302 -10 2230 122 3 0 chr9 135966230 135966541 -6304903 + AluSx SINE Alu 1 312 0 369 0 0 0 chr9 135966554 135966595 -6304849 + (CA)n Simple_repeat Simple_repeat 2 42 0 864 186 64 59 chr9 135966896 135967100 -6304344 + MER3 DNA MER1_type 1 205 -4 2025 114 0 7 chr9 135967316 135967612 -6303832 + AluSq SINE Alu 16 309 0 436 143 67 48 chr9 135968104 135968209 -6303235 - HsTC2 DNA Tc2 -2 1896 1790 2644 45 0 3 chr9 135968246 135968554 -6302890 + AluY SINE Alu 1 307 -4 1100 148 0 0 chr9 135968618 135968780 -6302664 - FRAM SINE Alu -15 161 1 2193 94 7 3 chr9 135969097 135969384 -6302060 + AluSx SINE Alu 1 288 -24 882 198 128 77 chr9 135969745 135969919 -6301525 + L1MC5 LINE L1 7505 7669 -292 2026 134 0 10 chr9 135969919 135970210 -6301234 + AluSx SINE Alu 1 288 -24 882 198 128 77 chr9 135970210 135970424 -6301020 + L1MC5 LINE L1 7669 7913 -48 233 227 172 16 chr9 135970543 135970671 -6300773 - MER112 DNA MER1_type -48 212 65 1456 203 137 71 chr9 135970760 135971229 -6300215 + L1MC4 LINE L1 7014 7531 -511 2291 100 0 3 chr9 135971229 135971530 -6299914 - AluSg SINE Alu -10 300 1 1456 203 137 71 chr9 135971530 135971651 -6299793 + L1MC4 LINE L1 7531 7643 -399 434 218 61 34 chr9 135971733 135971880 -6299564 - L1M2 LINE L1 -845 5452 5302 1515 197 16 30 chr9 135971897 135972202 -6299242 - AluJo SINE Alu -11 301 1 1334 172 120 4 chr9 135972341 135972608 -6298836 + AluJb SINE Alu 1 298 -14 2135 118 0 7 chr9 135972758 135973054 -6298390 - AluSq SINE Alu -19 294 1 460 301 65 65 chr9 135973087 135973339 -6298105 - L1MEd LINE L1 -4971 1148 894 429 82 0 0 chr9 135973339 135973400 -6298044 - L1PA6 LINE L1 0 6154 6094 460 301 65 65 chr9 135973400 135973483 -6297961 - L1MEd LINE L1 -5224 895 813 854 133 0 0 chr9 135974200 135974320 -6297124 + AluSq/x SINE Alu 1 120 -193 308 114 0 0 chr9 135974320 135974364 -6297080 + Alu SINE Alu 256 299 -9 31 0 0 0 chr9 135974364 135974395 -6297049 + AT_rich Low_complexity Low_complexity 1 31 0 2381 82 0 3 chr9 135976174 135976477 -6294967 + AluY SINE Alu 2 303 -8 509 247 27 53 chr9 135976774 135976924 -6294520 + L1ME3A LINE L1 5972 6117 -53 918 221 56 10 chr9 135977140 135977335 -6294109 + MER8 DNA MER2_type 11 214 -25 982 211 11 0 chr9 135977360 135977540 -6293904 - AluJb SINE Alu -23 289 108 245 276 47 16 chr9 135977586 135977713 -6293731 + L1MC5 LINE L1 7504 7634 -327 2136 108 20 3 chr9 135977728 135978024 -6293420 + AluSx SINE Alu 1 301 -11 1061 160 47 42 chr9 135978168 135978380 -6293064 + MER20 DNA MER1_type 7 219 0 2237 108 0 0 chr9 135978421 135978708 -6292736 - AluSx SINE Alu -24 288 2 254 237 85 17 chr9 135978745 135978863 -6292581 + L1MC4 LINE L1 7916 8041 -1 1762 170 7 13 chr9 135978870 135979170 -6292274 + AluJb SINE Alu 1 298 -14 1627 195 10 23 chr9 135979805 135980107 -6291337 + AluJo SINE Alu 1 298 -14 2173 117 10 0 chr9 135980109 135980418 -6291026 + AluSp SINE Alu 1 312 -1 2132 113 10 0 chr9 135980454 135980746 -6290698 - AluSg SINE Alu -15 295 1 2222 86 3 16 chr9 135981213 135981527 -6289917 + AluSx SINE Alu 1 310 -2 262 240 0 0 chr9 135981710 135981760 -6289684 - L2 LINE L2 -13 3259 3210 1695 148 7 17 chr9 135981784 135982074 -6289370 + AluJb SINE Alu 1 287 -25 299 210 48 0 chr9 135982125 135982187 -6289257 + L1MC/D LINE L1 5621 5685 -2123 395 181 0 0 chr9 135982187 135982259 -6289185 + AluJ/FRAM SINE Alu 231 302 0 389 267 67 28 chr9 135982982 135983203 -6288241 + MER106B DNA MER1_type 4 1055 -4 1915 127 20 10 chr9 135983210 135983510 -6287934 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr9 135983788 135983813 -6287631 + AT_rich Low_complexity Low_complexity 1 25 0 1366 92 0 5 chr9 135985609 135985794 -6285650 + AluSc SINE Alu 1 184 -125 604 323 141 18 chr9 135985830 135986384 -6285060 + L2 LINE L2 2249 2870 -444 184 311 135 0 chr9 135986997 135987071 -6284373 - MIR SINE MIR -129 133 50 1234 172 23 16 chr9 135987410 135987666 -6283778 + AluJo SINE Alu 55 312 0 22 35 0 0 chr9 135988193 135988222 -6283222 + GC_rich Low_complexity Low_complexity 1 29 0 1254 143 31 42 chr9 135988702 135988844 -6282600 + AluJo SINE Alu 6 145 -167 2411 65 3 0 chr9 135988844 135989153 -6282291 + AluSq SINE Alu 1 310 -3 1254 143 31 42 chr9 135989153 135989296 -6282148 + AluJo SINE Alu 145 288 -24 2099 92 7 3 chr9 135989349 135989642 -6281802 - AluSx SINE Alu -18 294 1 469 154 27 107 chr9 135990023 135990087 -6281357 - ORSL DNA AcHobo -129 146 78 2409 41 3 0 chr9 135990087 135990382 -6281062 - AluY SINE Alu -15 296 1 469 154 27 107 chr9 135990382 135990466 -6280978 - ORSL DNA AcHobo -197 78 10 361 269 58 29 chr9 135990641 135990812 -6280632 - MER69 DNA AcHobo -4 2522 2347 1566 112 0 0 chr9 135990812 135991027 -6280417 + AluSx SINE Alu 1 215 -97 459 0 0 0 chr9 135991055 135991106 -6280338 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 529 210 17 62 chr9 135991113 135991289 -6280155 - L1M4 LINE L1 -1419 4963 4796 2449 146 28 66 chr9 135991290 135991403 -6280041 + MER6A DNA MER2_type -26 90 -705 2124 81 0 27 chr9 135991403 135991699 -6279745 - AluSg SINE Alu -22 288 1 2449 146 28 66 chr9 135991699 135992087 -6279357 + MER6A DNA MER2_type 90 457 -78 1922 241 15 15 chr9 135992612 135992757 -6278687 - L1M4c LINE L1 -3076 3306 3162 1730 176 0 13 chr9 135992757 135993070 -6278374 - AluJo SINE Alu -3 309 1 1922 241 15 15 chr9 135993070 135993447 -6277997 - L1M4c LINE L1 -3219 3163 2784 2166 85 7 0 chr9 135993448 135993741 -6277703 + AluSg SINE Alu 1 295 -15 1162 125 17 0 chr9 135993741 135993917 -6277527 + AluSq SINE Alu 134 312 -1 963 208 55 143 chr9 135993929 135994315 -6277129 - L1M4c LINE L1 -3585 2797 2379 2181 107 0 0 chr9 135994315 135994615 -6276829 - AluSp SINE Alu -13 300 1 963 208 55 143 chr9 135994615 135994959 -6276485 - L1M4c LINE L1 -4003 2379 2133 2317 54 0 57 chr9 135994959 135995275 -6276169 - AluY SINE Alu -13 298 1 963 208 55 143 chr9 135995275 135995309 -6276135 - L1M4c LINE L1 -4249 2133 2098 2168 117 0 0 chr9 135995420 135995729 -6275715 + AluSx SINE Alu 1 309 -3 2149 117 3 0 chr9 135995729 135996036 -6275408 + AluSx SINE Alu 1 308 -4 2167 106 0 3 chr9 135996871 135997174 -6274270 - AluSg SINE Alu -8 302 1 818 157 0 0 chr9 135997207 135997328 -6274116 + AluJb SINE Alu 6 126 -186 2158 93 0 13 chr9 135997517 135997653 -6273791 + AluSp SINE Alu 1 137 -176 2422 46 7 0 chr9 135997653 135997957 -6273487 + AluY SINE Alu 1 306 -5 2158 93 0 13 chr9 135997957 135998122 -6273322 + AluSp SINE Alu 137 298 -15 2127 109 0 6 chr9 135998206 135998519 -6272925 - AluSx SINE Alu -1 311 1 1923 228 131 26 chr9 135998566 135999131 -6272313 + MLT1E2 LTR MaLR 1 624 -2 460 296 91 0 chr9 135999163 135999362 -6272082 - L1M4 LINE L1 -1842 4304 4088 578 103 0 62 chr9 135999363 135999460 -6271984 - FLAM_A SINE Alu -6 136 46 433 260 225 5 chr9 135999468 135999668 -6271776 - L1M4 LINE L1 -2063 4083 3840 1917 178 74 0 chr9 135999733 136000110 -6271334 - L1MB5 LINE L1 -9 6165 5761 227 267 59 52 chr9 136000223 136000358 -6271086 - L1MEd LINE L1 -5982 137 2 2043 110 0 0 chr9 136000426 136000727 -6270717 + AluSx SINE Alu 1 301 0 1024 242 43 118 chr9 136001129 136001844 -6269600 - PABL_B LTR ERV1 0 667 6 233 235 15 15 chr9 136002284 136002352 -6269092 + CT-rich Low_complexity Low_complexity 2 69 0 344 303 153 37 chr9 136002359 136002600 -6268844 - L2 LINE L2 -42 3271 3003 205 371 86 45 chr9 136002688 136002909 -6268535 - L2 LINE L2 -348 2966 2737 258 136 0 0 chr9 136002909 136002953 -6268491 + (TC)n Simple_repeat Simple_repeat 2 45 0 2064 119 7 0 chr9 136002956 136003251 -6268193 - AluSx SINE Alu -15 297 1 322 300 121 32 chr9 136003280 136003593 -6267851 - L2 LINE L2 -616 2698 2358 267 208 83 14 chr9 136004001 136004073 -6267371 + MER51D LTR ERV1 500 576 -81 476 79 0 0 chr9 136004101 136004164 -6267280 - AluY SINE Alu -15 296 234 1440 51 0 6 chr9 136004164 136004341 -6267103 - AluY SINE Alu -122 189 14 454 269 138 80 chr9 136004458 136004538 -6266906 - L2 LINE L2 -896 2418 2344 2101 93 4 0 chr9 136004538 136004844 -6266600 + AluSp SINE Alu 2 308 0 454 269 138 80 chr9 136004844 136005087 -6266357 - L2 LINE L2 -970 2344 2073 201 138 0 0 chr9 136005094 136005123 -6266321 + (CATATA)n Simple_repeat Simple_repeat 1 29 0 185 280 107 0 chr9 136005131 136005206 -6266238 - L2 LINE L2 -1618 1696 1614 1447 137 31 45 chr9 136005252 136005544 -6265900 + AluJb SINE Alu 16 303 -9 332 376 132 7 chr9 136005585 136006016 -6265428 - L2 LINE L2 -1831 1483 999 275 221 33 107 chr9 136006094 136006146 -6265298 + L2 LINE L2 3150 3204 -68 2242 77 13 0 chr9 136006146 136006445 -6264999 - AluSg SINE Alu -7 303 1 275 221 33 107 chr9 136006445 136006514 -6264930 + L2 LINE L2 3204 3262 -10 1061 108 24 12 chr9 136006753 136006919 -6264525 + AluSg/x SINE Alu 135 302 -8 1832 117 39 4 chr9 136007057 136007338 -6264106 - AluSx SINE Alu -21 291 1 1959 119 13 42 chr9 136007346 136007657 -6263787 - AluSx SINE Alu -10 302 1 261 164 18 18 chr9 136007711 136007766 -6263678 + LTR33A LTR ERVL 453 507 -16 910 161 18 0 chr9 136007833 136008001 -6263443 - FRAM SINE Alu -4 172 2 209 136 0 23 chr9 136008038 136008082 -6263362 + (TCCC)n Simple_repeat Simple_repeat 1 43 0 820 116 25 0 chr9 136008082 136008203 -6263241 - FLAM_C SINE Alu -19 124 1 1676 127 0 0 chr9 136008867 136009103 -6262341 - AluSx SINE Alu -64 248 13 616 315 72 0 chr9 136009405 136009586 -6261858 - MIR SINE MIR -26 236 43 255 243 32 159 chr9 136009681 136009795 -6261649 - MER5A DNA MER1_type -22 167 85 1223 141 80 119 chr9 136009795 136010107 -6261337 - AluJo SINE Alu -12 300 1 255 243 32 159 chr9 136010107 136010181 -6261263 - MER5A DNA MER1_type -104 85 3 292 233 47 0 chr9 136010245 136010417 -6261027 + (TG)n Simple_repeat Simple_repeat 1 180 0 439 195 46 3 chr9 136010437 136011102 -6260342 + (TG)n Simple_repeat Simple_repeat 1 693 0 448 197 50 0 chr9 136011162 136011512 -6259932 + (TG)n Simple_repeat Simple_repeat 1 367 0 293 198 52 6 chr9 136011538 136011710 -6259734 + (TG)n Simple_repeat Simple_repeat 1 180 0 262 224 36 12 chr9 136011754 136011919 -6259525 + (TG)n Simple_repeat Simple_repeat 1 169 0 303 316 21 78 chr9 136011944 136012137 -6259307 - MIR SINE MIR -13 249 68 751 286 59 9 chr9 136012587 136012807 -6258637 - MIR SINE MIR -24 238 8 1903 131 3 30 chr9 136013196 136013501 -6257943 - AluSx SINE Alu -15 297 1 185 293 86 26 chr9 136013537 136013653 -6257791 - MIR SINE MIR -119 143 21 993 163 0 11 chr9 136014021 136014199 -6257245 - AluJb SINE Alu -1 311 136 2142 92 14 0 chr9 136014320 136014612 -6256832 - AluSx SINE Alu -16 296 1 265 222 25 34 chr9 136015275 136015399 -6256045 + L1P5 LINE L1 5318 5442 -714 1506 261 126 24 chr9 136015406 136015772 -6255672 + L1MC4 LINE L1 7241 7568 -474 1375 138 44 119 chr9 136015772 136015904 -6255540 + AluSg SINE Alu 1 141 -169 2071 123 3 0 chr9 136015904 136016197 -6255247 + AluSq SINE Alu 1 294 -19 1375 138 44 119 chr9 136016197 136016384 -6255060 + AluSg SINE Alu 141 296 -14 1506 261 126 24 chr9 136016384 136016715 -6254729 + L1MC4 LINE L1 7568 8009 -33 342 286 92 66 chr9 136017099 136017326 -6254118 + L1MC5 LINE L1 7685 7917 -44 452 248 157 16 chr9 136017360 136017666 -6253778 + L1M4 LINE L1 2982 3330 -2816 2223 105 3 0 chr9 136017766 136018072 -6253372 - AluSx SINE Alu -5 307 1 351 269 12 117 chr9 136018279 136018450 -6252994 + MER5B DNA MER1_type 23 175 -3 203 321 75 9 chr9 136018607 136018713 -6252731 + L2 LINE L2 2861 2973 -341 192 258 265 30 chr9 136018759 136018891 -6252553 + L2 LINE L2 3044 3206 -107 455 179 104 9 chr9 136019021 136019127 -6252317 + L2 LINE L2 3193 3308 -5 21 0 0 0 chr9 136019758 136019779 -6251665 + AT_rich Low_complexity Low_complexity 1 21 0 257 304 189 58 chr9 136020070 136020097 -6251347 - MIR SINE MIR -27 235 213 1527 167 36 4 chr9 136020097 136020378 -6251066 - AluJo SINE Alu -22 290 1 257 304 189 58 chr9 136020378 136020541 -6250903 - MIR SINE MIR -49 213 20 468 256 45 60 chr9 136021001 136021200 -6250244 - MIR SINE MIR -54 208 13 2207 96 0 13 chr9 136021454 136021755 -6249689 - AluSx SINE Alu -13 299 3 2152 94 3 3 chr9 136022299 136022597 -6248847 - AluSg SINE Alu -12 298 1 2012 136 0 13 chr9 136023080 136023396 -6248048 - AluSx SINE Alu 0 312 1 317 229 14 0 chr9 136025810 136025880 -6245564 - MER33 DNA MER1_type 0 324 254 983 243 0 12 chr9 136025965 136026220 -6245224 - MER33 DNA MER1_type -250 74 1 3524 103 41 4 chr9 136026374 136026867 -6244577 + MER9 LTR ERVK 1 511 0 22 0 0 0 chr9 136026933 136026955 -6244489 + AT_rich Low_complexity Low_complexity 1 22 0 1848 113 75 0 chr9 136027037 136027319 -6244125 - AluJb SINE Alu -9 303 1 2046 119 0 3 chr9 136027405 136027699 -6243745 - AluSx SINE Alu -19 293 1 1858 147 0 3 chr9 136027822 136028115 -6243329 + AluSx SINE Alu 7 298 -14 2193 108 0 0 chr9 136028117 136028423 -6243021 + AluSx SINE Alu 2 307 -5 29 0 0 0 chr9 136028431 136028460 -6242984 + AT_rich Low_complexity Low_complexity 1 29 0 1470 142 9 4 chr9 136029865 136030090 -6241354 - AluSx SINE Alu -1 309 84 814 50 0 0 chr9 136030142 136030241 -6241203 - AluSx SINE Alu -214 99 1 2462 77 0 0 chr9 136030911 136031209 -6240235 + AluY SINE Alu 1 298 -13 1921 144 18 0 chr9 136031812 136032096 -6239348 - AluJo SINE Alu -23 289 1 2307 112 0 10 chr9 136032122 136032434 -6239010 + AluSg SINE Alu 1 309 -1 22 56 0 0 chr9 136032753 136032789 -6238655 + AT_rich Low_complexity Low_complexity 1 36 0 2308 103 7 0 chr9 136033528 136033829 -6237615 - AluSx SINE Alu -9 303 1 212 284 54 14 chr9 136034083 136034157 -6237287 - MIR3 SINE MIR -11 197 121 2149 122 13 0 chr9 136034259 136034563 -6236881 + AluSp SINE Alu 6 313 0 2409 82 0 13 chr9 136036060 136036365 -6235079 - AluY SINE Alu -10 301 1 236 312 151 23 chr9 136036575 136036793 -6234651 + L2 LINE L2 2818 3063 -209 225 209 0 0 chr9 136036876 136036919 -6234525 + A-rich Low_complexity Low_complexity 1 43 0 426 180 18 27 chr9 136037344 136037455 -6233989 - L1MC4a LINE L1 -1859 5949 5840 654 293 90 59 chr9 136037552 136038061 -6233383 + L2 LINE L2 1440 1964 -1350 2542 47 0 7 chr9 136038084 136038383 -6233061 - AluY SINE Alu -4 307 11 2508 79 0 9 chr9 136038399 136038714 -6232730 - AluSx SINE Alu 0 312 1 346 333 40 45 chr9 136038828 136039164 -6232280 + L2 LINE L2 2721 3062 -251 2616 60 0 0 chr9 136039526 136039828 -6231616 + AluSq SINE Alu 1 302 -11 584 236 161 22 chr9 136040310 136040577 -6230867 - L2 LINE L2 -146 3167 2864 235 305 53 53 chr9 136040724 136040819 -6230625 - MIR3 SINE MIR -5 203 109 314 224 272 8 chr9 136040909 136041034 -6230410 - MIR SINE MIR -59 203 46 193 163 82 102 chr9 136041445 136041494 -6229950 + MER5B DNA MER1_type 2 49 -129 247 333 89 11 chr9 136041545 136041725 -6229719 + L1MC4 LINE L1 7748 7941 -101 1598 122 53 4 chr9 136041747 136042140 -6229304 + LTR46 LTR ERV1 1 459 -1 273 241 38 88 chr9 136042325 136042403 -6229041 - MER5B DNA MER1_type -48 130 72 1572 196 17 3 chr9 136042403 136042694 -6228750 - AluJb SINE Alu -17 295 1 273 241 38 88 chr9 136042694 136042747 -6228697 - MER5B DNA MER1_type -106 72 18 21 0 0 0 chr9 136043563 136043584 -6227860 + GC_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 136043724 136043773 -6227671 + GC_rich Low_complexity Low_complexity 1 49 0 359 327 32 13 chr9 136043828 136043984 -6227460 + MIR SINE MIR 95 253 -9 294 29 0 0 chr9 136045067 136045102 -6226342 + (CA)n Simple_repeat Simple_repeat 2 36 0 196 224 30 0 chr9 136045152 136045219 -6226225 + (TA)n Simple_repeat Simple_repeat 1 69 0 242 113 0 19 chr9 136045799 136045852 -6225592 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 561 281 60 22 chr9 136047116 136047301 -6224143 - MIR3 SINE MIR 0 208 17 187 333 0 0 chr9 136047652 136047706 -6223738 + MIR SINE MIR 209 262 0 375 23 0 0 chr9 136047706 136047750 -6223694 + (CA)n Simple_repeat Simple_repeat 1 44 0 2447 86 3 10 chr9 136049536 136049849 -6221595 - AluSp SINE Alu -2 311 1 2305 102 7 0 chr9 136049849 136050143 -6221301 - AluSx SINE Alu -15 297 1 2432 103 0 0 chr9 136050309 136050619 -6220825 - AluSg SINE Alu 0 310 1 401 266 108 51 chr9 136050739 136050953 -6220491 + MIR SINE MIR 34 259 -3 327 213 16 90 chr9 136051220 136051342 -6220102 + MIR SINE MIR 90 202 -60 1121 178 9 44 chr9 136051374 136051599 -6219845 + MER20 DNA MER1_type 1 217 -2 232 175 0 0 chr9 136052942 136052982 -6218462 - L2 LINE L2 -12 3301 3262 1980 155 3 0 chr9 136053085 136053381 -6218063 + AluJo SINE Alu 1 297 -15 2116 91 10 55 chr9 136053594 136053901 -6217543 + AluSx SINE Alu 18 310 -2 461 315 0 42 chr9 136053920 136054063 -6217381 - L2 LINE L2 0 3272 3136 2274 87 55 0 chr9 136054209 136054498 -6216946 - AluSx SINE Alu -7 305 1 785 174 42 30 chr9 136054559 136054726 -6216718 - MER69A DNA AcHobo 0 177 9 486 63 0 0 chr9 136054834 136054897 -6216547 + U5 snRNA snRNA 1 63 -53 259 284 123 0 chr9 136055132 136055213 -6216231 - L2 LINE L2 -7 3306 3216 2212 119 0 0 chr9 136055220 136055515 -6215929 - AluSq SINE Alu -18 295 1 670 273 115 5 chr9 136056639 136056848 -6214596 - MIR SINE MIR -22 240 9 260 348 68 17 chr9 136056922 136057040 -6214404 - MIR SINE MIR -111 151 28 2082 103 17 0 chr9 136057332 136057623 -6213821 + AluY SINE Alu 1 296 -15 1132 88 0 0 chr9 136060697 136060844 -6210600 + AluSg/x SINE Alu 157 303 -7 854 233 96 38 chr9 136060844 136061158 -6210286 - MLT1B LTR MaLR -58 332 1 1619 152 3 42 chr9 136061200 136061489 -6209955 - AluJo SINE Alu -7 305 28 212 232 0 0 chr9 136061870 136061926 -6209518 + C-rich Low_complexity Low_complexity 1 56 0 2162 100 18 4 chr9 136062053 136062357 -6209087 + AluSg SINE Alu 1 308 0 328 280 13 0 chr9 136062734 136062809 -6208635 - HAL1 LINE L1 -1606 901 826 2336 105 3 0 chr9 136062973 136063277 -6208167 + AluSg SINE Alu 1 305 -5 2263 70 17 40 chr9 136063277 136063578 -6207866 + AluY SINE Alu 1 294 -17 359 275 19 81 chr9 136063893 136064053 -6207391 - HAL1 LINE L1 -2350 157 8 2221 257 81 46 chr9 136064441 136065463 -6205981 + L1ME LINE L1 6 1063 -5007 299 37 463 0 chr9 136065516 136065570 -6205874 - MADE1 DNA Mariner 0 80 2 477 205 0 0 chr9 136065600 136065683 -6205761 - FRAM/FAM SINE Alu -95 81 1 378 257 19 2 chr9 136065706 136065862 -6205582 + L1ME LINE L1 1206 1373 -4712 555 286 21 75 chr9 136066141 136066248 -6205196 + MIR SINE MIR 23 134 -128 2181 117 3 13 chr9 136066248 136066413 -6205031 - AluSx SINE Alu -13 299 137 2366 68 3 7 chr9 136066413 136066728 -6204716 - AluY SINE Alu 0 311 1 2181 117 3 13 chr9 136066728 136066862 -6204582 - AluSx SINE Alu -175 137 3 555 286 21 75 chr9 136066862 136066995 -6204449 + MIR SINE MIR 134 250 -12 2392 84 0 0 chr9 136067265 136067552 -6203892 - AluSx SINE Alu -15 297 11 1598 152 62 8 chr9 136067599 136067890 -6203554 + AluJo SINE Alu 15 319 0 449 294 76 72 chr9 136067891 136068153 -6203291 + L2 LINE L2 3010 3272 0 900 250 177 15 chr9 136069778 136070174 -6201270 - MLT1D LTR MaLR 0 505 46 2574 59 0 7 chr9 136071218 136071525 -6199919 - AluY SINE Alu -6 305 1 813 215 51 31 chr9 136071569 136071642 -6199802 + MER63 DNA MER1_type 801 871 -190 2027 116 34 0 chr9 136071642 136071936 -6199508 + AluSx SINE Alu 1 304 -8 813 215 51 31 chr9 136071936 136072118 -6199326 + MER63 DNA MER1_type 871 1061 0 207 0 0 0 chr9 136072234 136072257 -6199187 + (TA)n Simple_repeat Simple_repeat 1 23 0 1945 151 17 0 chr9 136072257 136072549 -6198895 - AluJb SINE Alu -15 297 1 2511 100 0 0 chr9 136072578 136072889 -6198555 - AluSx SINE Alu 0 312 2 2615 42 0 10 chr9 136073279 136073585 -6197859 + AluY SINE Alu 1 303 -8 232 108 0 62 chr9 136073697 136073762 -6197682 + (CAT)n Simple_repeat Simple_repeat 2 62 0 1650 146 0 24 chr9 136073799 136074085 -6197359 + AluJb SINE Alu 37 316 0 750 278 31 24 chr9 136074085 136074340 -6197104 - MIR SINE MIR -4 258 2 229 285 112 10 chr9 136074415 136074551 -6196893 - MIR SINE MIR -64 144 46 452 281 140 6 chr9 136075519 136075683 -6195761 + MER5A DNA MER1_type 4 189 0 368 216 39 69 chr9 136075752 136075854 -6195590 - L2 LINE L2 -18 3254 3156 1817 174 0 7 chr9 136075983 136076277 -6195167 + AluJb SINE Alu 1 292 -20 1026 102 0 0 chr9 136076429 136076556 -6194888 - FLAM_C SINE Alu -16 127 1 1736 197 59 0 chr9 136076557 136076928 -6194516 - L1MB5 LINE L1 -38 6136 5744 2477 80 3 0 chr9 136076955 136077267 -6194177 - AluSp SINE Alu 0 313 1 2364 145 28 52 chr9 136078455 136078676 -6192768 - L1MB3 LINE L1 -7 6176 5951 2433 109 0 0 chr9 136078676 136078988 -6192456 - AluSx SINE Alu 0 312 1 2364 145 28 52 chr9 136078988 136079269 -6192175 - L1MB3 LINE L1 -232 5951 5686 2335 115 0 3 chr9 136079301 136079613 -6191831 + AluSx SINE Alu 2 312 0 2556 70 0 13 chr9 136080173 136080486 -6190958 + AluY SINE Alu 1 309 -2 253 287 56 37 chr9 136080500 136080608 -6190836 - MIR SINE MIR -17 245 136 28 0 0 0 chr9 136080615 136080643 -6190801 + AT_rich Low_complexity Low_complexity 1 28 0 814 108 0 0 chr9 136080658 136080769 -6190675 - FLAM_C SINE Alu -32 111 1 427 243 57 43 chr9 136080775 136080915 -6190529 - MIR SINE MIR -118 144 3 342 115 0 0 chr9 136081875 136081927 -6189517 + (CA)n Simple_repeat Simple_repeat 2 53 0 361 262 184 21 chr9 136082133 136082274 -6189170 + MIR SINE MIR 87 250 -12 2418 107 0 0 chr9 136082288 136082598 -6188846 - AluSq SINE Alu 0 313 4 416 346 17 6 chr9 136082830 136083009 -6188435 - L1ME1 LINE L1 -5 6161 5981 2136 241 23 23 chr9 136083020 136083579 -6187865 - L1ME1 LINE L1 -140 6026 5468 2255 60 0 60 chr9 136083608 136083944 -6187500 - AluY SINE Alu 0 318 1 595 251 36 51 chr9 136084193 136084388 -6187056 - MIR SINE MIR -69 193 2 329 341 163 5 chr9 136084399 136084768 -6186676 - L2 LINE L2 -532 2782 2356 2471 85 0 3 chr9 136084771 136085076 -6186368 + AluSq SINE Alu 3 306 -7 2288 103 7 10 chr9 136085507 136085817 -6185627 - AluSc SINE Alu 0 309 1 434 321 108 25 chr9 136086373 136086613 -6184831 + L3 LINE CR1 1316 1575 -2 274 261 33 33 chr9 136086843 136086935 -6184509 + MIR3 SINE MIR 101 192 -16 2310 106 0 3 chr9 136086957 136087260 -6184184 + AluSx SINE Alu 1 302 -10 2251 104 10 3 chr9 136088939 136089238 -6182206 + AluSx SINE Alu 1 301 -11 1469 164 9 4 chr9 136089239 136089471 -6181973 + AluSg/x SINE Alu 76 308 -2 497 286 55 33 chr9 136089569 136089751 -6181693 + MIR SINE MIR 12 197 -65 359 269 113 43 chr9 136089769 136089910 -6181534 - L2 LINE L2 0 3313 3163 1862 126 33 11 chr9 136090469 136090739 -6180705 - AluJb SINE Alu -16 296 21 305 218 90 9 chr9 136092311 136092461 -6178983 + MER3 DNA MER1_type 1 209 0 2675 44 0 0 chr9 136092787 136093085 -6178359 - AluY SINE Alu -13 298 1 699 186 0 0 chr9 136093135 136093296 -6178148 + (TG)n Simple_repeat Simple_repeat 1 161 0 313 214 43 0 chr9 136093296 136093366 -6178078 + L1MCa LINE L1 1996 2068 -4358 700 191 3 3 chr9 136093377 136093688 -6177756 + (TG)n Simple_repeat Simple_repeat 1 311 0 575 296 13 56 chr9 136093940 136094078 -6177366 + MIR SINE MIR 38 164 -98 2075 175 9 40 chr9 136094078 136094475 -6176969 + L1MB5 LINE L1 5744 6127 -47 2165 87 11 0 chr9 136094475 136094740 -6176704 - AluSx SINE Alu -44 268 1 2075 175 9 40 chr9 136094740 136094787 -6176657 + L1MB5 LINE L1 6127 6174 0 575 296 13 56 chr9 136094787 136094881 -6176563 + MIR SINE MIR 164 260 -2 228 286 43 0 chr9 136095752 136095822 -6175622 - MIR SINE MIR -59 149 77 2170 87 0 7 chr9 136096282 136096558 -6174886 + AluSq SINE Alu 37 310 -3 241 276 191 0 chr9 136096579 136096684 -6174760 + L2 LINE L2 3163 3287 -26 227 315 0 0 chr9 136098016 136098070 -6173374 - MIR SINE MIR -61 147 94 1192 229 18 3 chr9 136098183 136098467 -6172977 - MER33 DNA MER1_type -24 300 13 2214 89 72 10 chr9 136098524 136098816 -6172628 + AluSx SINE Alu 1 310 -2 708 174 83 0 chr9 136099810 136099942 -6171502 - AluJb SINE Alu -21 291 149 222 239 0 60 chr9 136099947 136100014 -6171430 + MER5B DNA MER1_type 115 177 -1 2297 115 0 0 chr9 136100610 136100906 -6170538 + AluSx SINE Alu 1 296 -16 3799 157 8 30 chr9 136100909 136101636 -6169808 - L1MB2 LINE L1 -15 6156 5446 2133 108 3 10 chr9 136101775 136102072 -6169372 + AluSx SINE Alu 1 295 -17 457 286 116 54 chr9 136102234 136102493 -6168951 + L2 LINE L2 2996 3270 -2 324 70 0 0 chr9 136102494 136102537 -6168907 + (CA)n Simple_repeat Simple_repeat 1 43 0 303 252 80 52 chr9 136103374 136103549 -6167895 - L1MD2 LINE L1 -6 7802 6165 2483 83 3 0 chr9 136103553 136103853 -6167591 - AluSp SINE Alu -12 301 1 552 281 45 36 chr9 136103919 136104143 -6167301 - MIR SINE MIR -9 253 28 1809 97 121 8 chr9 136104441 136104698 -6166746 + AluSg SINE Alu 1 286 -24 470 180 18 36 chr9 136104730 136104841 -6166603 + ORSL DNA AcHobo 164 272 -3 1721 149 14 51 chr9 136105402 136105726 -6165718 - AluJb SINE Alu 0 313 1 235 347 82 0 chr9 136105868 136105966 -6165478 + L2 LINE L2 3200 3305 -8 1742 146 6 56 chr9 136106189 136106510 -6164934 + AluJo SINE Alu 1 305 -7 1908 167 79 17 chr9 136106605 136107012 -6164432 - MSTB1 LTR MaLR 0 432 1 540 272 41 31 chr9 136107024 136107219 -6164225 - MIR SINE MIR -39 223 27 2386 95 3 0 chr9 136107401 136107695 -6163749 - AluSq SINE Alu -16 297 3 213 200 0 0 chr9 136108044 136108079 -6163365 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 1636 194 29 49 chr9 136110261 136110669 -6160775 + MLT1C LTR MaLR 68 467 0 211 248 121 78 chr9 136110849 136110990 -6160454 + MIR SINE MIR 24 170 -92 540 261 43 29 chr9 136111010 136111217 -6160227 - L2 LINE L2 -1 3312 3103 743 91 0 9 chr9 136111774 136111884 -6159560 + MSTA LTR MaLR 1 109 -319 * 907 170 0 0 chr9 136111876 136112029 -6159415 + MER77 LTR ERV1 449 601 -4 198 235 136 12 chr9 136113603 136113684 -6157760 - MIR SINE MIR -163 99 9 334 219 10 52 chr9 136113754 136113850 -6157594 - MIR3 SINE MIR -13 195 104 1369 194 115 56 chr9 136114639 136115154 -6156290 + LTR55 LTR ERV 1 545 -3 252 86 0 0 chr9 136115882 136115917 -6155527 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 520 306 38 16 chr9 136116207 136116393 -6155051 - MIR SINE MIR -23 239 50 1721 32 0 9 chr9 136116466 136116682 -6154762 + L1PA3 LINE L1 5942 6155 0 2165 92 4 0 chr9 136116714 136117029 -6154415 + AluSp SINE Alu 11 326 0 2200 131 0 3 chr9 136117646 136117952 -6153492 - AluSx SINE Alu -7 305 1 2219 164 65 107 chr9 136117963 136118559 -6152885 - L1MB5 LINE L1 -15 6159 5598 1637 127 0 0 chr9 136118559 136118788 -6152656 - AluSg/x SINE Alu -8 304 76 533 309 98 25 chr9 136118939 136119175 -6152269 - MIR SINE MIR -4 258 6 246 243 92 91 chr9 136119491 136119700 -6151744 - MIR SINE MIR -1 261 44 765 85 0 0 chr9 136119700 136119806 -6151638 + (TA)n Simple_repeat Simple_repeat 2 107 0 2528 60 0 0 chr9 136119806 136120106 -6151338 - AluY SINE Alu -11 300 1 325 156 89 11 chr9 136120925 136121015 -6150429 - MIR SINE MIR -67 141 45 236 303 40 0 chr9 136123111 136123187 -6148257 + MIR SINE MIR 41 119 -89 219 158 26 0 chr9 136123233 136123271 -6148173 + L2 LINE L2 3255 3293 -20 1127 196 20 117 chr9 136123622 136124025 -6147419 - MLT1A1 LTR MaLR -1 364 1 4591 154 23 24 chr9 136124505 136124900 -6146544 + MER6 DNA MER2_type 1 395 -470 2289 98 3 0 chr9 136124900 136125186 -6146258 + AluSp SINE Alu 1 287 -26 4591 154 23 24 chr9 136125186 136125656 -6145788 + MER6 DNA MER2_type 395 865 0 1908 170 0 25 chr9 136125721 136126038 -6145406 + AluJb SINE Alu 2 310 -2 337 310 57 32 chr9 136126249 136126407 -6145037 + MIR SINE MIR 23 184 -78 385 286 92 9 chr9 136127321 136127538 -6143906 - L1ME3A LINE L1 -123 6047 5813 449 95 40 0 chr9 136127542 136127616 -6143828 + T-rich Low_complexity Low_complexity 4 80 0 578 202 25 0 chr9 136127618 136127737 -6143707 - AluJb SINE Alu -1 311 190 1918 180 10 0 chr9 136127626 136127926 -6143518 - AluJb SINE Alu -9 303 1 913 225 9 28 chr9 136127934 136128152 -6143292 - MER20 DNA MER1_type -4 215 2 1210 262 85 12 chr9 136128153 136128654 -6142790 - L1ME3A LINE L1 -353 5809 5239 329 336 37 15 chr9 136128740 136128874 -6142570 + L2 LINE L2 3172 3308 -5 1525 207 36 22 chr9 136129387 136129744 -6141700 + MLT1A1 LTR MaLR 4 365 0 463 145 0 12 chr9 136129834 136129917 -6141527 + L1MC1 LINE L1 6247 6328 -5 1371 153 44 34 chr9 136130044 136130364 -6141080 - L1MB8 LINE L1 -12 6166 5844 550 320 35 9 chr9 136131293 136131524 -6139920 + MIR SINE MIR 14 250 -12 2060 142 3 7 chr9 136133583 136133885 -6137559 + AluJb SINE Alu 1 301 -11 508 313 21 0 chr9 136134026 136134170 -6137274 + MIR SINE MIR 116 262 0 563 264 0 7 chr9 136134228 136134383 -6137061 - L1ME3 LINE L1 -1 6161 6008 185 365 44 0 chr9 136134623 136134760 -6136684 + L2 LINE L2 2575 2717 -597 654 274 70 111 chr9 136134847 136135114 -6136330 - MLT1K LTR MaLR -77 511 274 2240 96 3 13 chr9 136135114 136135415 -6136029 - AluSx SINE Alu -12 300 3 654 274 70 111 chr9 136135415 136135661 -6135783 - MLT1K LTR MaLR -314 274 19 27 0 0 0 chr9 136135965 136135992 -6135452 + AT_rich Low_complexity Low_complexity 1 27 0 2809 181 76 16 chr9 136136038 136136645 -6134799 - L1MB3 LINE L1 -2 6181 5539 266 270 153 15 chr9 136137101 136137238 -6134206 + MIR3 SINE MIR 3 158 -50 264 283 167 36 chr9 136137302 136137440 -6134004 - MIR SINE MIR -47 215 60 1998 121 37 0 chr9 136137481 136137773 -6133671 + AluSx SINE Alu 1 302 0 423 307 8 28 chr9 136137782 136137958 -6133486 - MIR3 SINE MIR -31 177 3 727 259 49 21 chr9 136139322 136139565 -6131879 + MER102b DNA MER1_type 92 341 0 223 349 151 23 chr9 136139676 136139848 -6131596 - MIR SINE MIR -50 212 19 261 264 14 0 chr9 136140500 136140572 -6130872 - MIR SINE MIR -94 168 96 434 257 9 9 chr9 136141690 136141799 -6129645 + L2 LINE L2 3183 3291 -22 625 361 26 42 chr9 136141945 136142374 -6129070 + L3 LINE CR1 939 1360 -217 560 234 105 12 chr9 136142474 136142645 -6128799 - MIR SINE MIR -62 200 14 301 366 38 5 chr9 136142829 136143015 -6128429 - MIR SINE MIR -54 208 17 2214 123 0 0 chr9 136143207 136143500 -6127944 + AluSx SINE Alu 7 299 -13 415 317 68 42 chr9 136144548 136144751 -6126693 - MIR SINE MIR -35 227 25 241 221 26 78 chr9 136144756 136144833 -6126611 - L2 LINE L2 -20 3293 3221 263 263 119 25 chr9 136145145 136145263 -6126181 + L2 LINE L2 3182 3310 -3 1044 238 104 63 chr9 136145421 136145490 -6125954 - MLT1D LTR MaLR -2 503 438 2221 113 13 0 chr9 136145490 136145791 -6125653 + AluSq SINE Alu 1 305 -8 1044 238 104 63 chr9 136145791 136146183 -6125261 - MLT1D LTR MaLR -67 438 5 2281 119 0 0 chr9 136146379 136146673 -6124771 + AluSq SINE Alu 1 294 -19 27 0 0 0 chr9 136146715 136146742 -6124702 + AT_rich Low_complexity Low_complexity 1 27 0 1109 108 108 0 chr9 136146742 136146928 -6124516 - L1MA2 LINE L1 0 6304 6099 190 268 216 0 chr9 136148053 136148150 -6123294 - MIR SINE MIR -64 144 27 249 260 7 143 chr9 136148791 136148945 -6122499 - MER5A DNA MER1_type -20 169 37 * 400 250 15 52 chr9 136148830 136148966 -6122478 + MER5A DNA MER1_type 55 185 -4 643 220 190 9 chr9 136149081 136149313 -6122131 + ORSL DNA AcHobo 1 274 -1 792 239 81 81 chr9 136149685 136150019 -6121425 - MER102b DNA MER1_type -3 338 5 315 297 0 45 chr9 136150045 136150156 -6121288 + MIR SINE MIR 86 191 -71 1188 193 161 3 chr9 136150184 136150294 -6121150 + L1MD2 LINE L1 6007 6098 -261 300 70 0 0 chr9 136150294 136150337 -6121107 + (CA)n Simple_repeat Simple_repeat 1 43 0 1188 193 161 3 chr9 136150337 136150531 -6120913 + L1MD2 LINE L1 6098 6359 0 273 343 41 64 chr9 136152092 136152311 -6119133 + MIR SINE MIR 6 219 -43 343 254 45 27 chr9 136152635 136152745 -6118699 + MIR SINE MIR 76 187 -75 957 172 0 0 chr9 136152871 136153051 -6118393 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1008 151 0 0 chr9 136153066 136153119 -6118325 + (TGGA)n Simple_repeat Simple_repeat 1 232 0 1008 151 0 0 chr9 136153119 136153298 -6118146 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1367 92 0 4 chr9 136153460 136153989 -6117455 + (TGGA)n Simple_repeat Simple_repeat 1 527 0 314 200 142 8 chr9 136154268 136154285 -6117159 - L1MA10 LINE L1 0 6334 6318 438 156 62 192 chr9 136154285 136154388 -6117056 - L1ME2 LINE L1 -7 6155 6092 1524 180 8 4 chr9 136154388 136154643 -6116801 + AluJo SINE Alu 1 256 -56 438 156 62 192 chr9 136154643 136154742 -6116702 - L1ME2 LINE L1 -70 6092 5982 228 326 51 0 chr9 136155453 136155551 -6115893 - L2 LINE L2 -54 3218 3116 2205 124 17 0 chr9 136155787 136156086 -6115358 - AluSx SINE Alu -8 304 1 312 221 12 25 chr9 136156323 136156420 -6115024 + MIR SINE MIR 29 129 -79 2364 113 3 3 chr9 136157102 136157413 -6114031 - AluSq SINE Alu -2 311 1 242 297 55 0 chr9 136157483 136157574 -6113870 - L1ME2 LINE L1 -1921 5887 5792 865 150 0 0 chr9 136158028 136158161 -6113283 - FLAM_C SINE Alu 0 133 1 2014 117 7 43 chr9 136158343 136158642 -6112802 + AluSx SINE Alu 1 288 -24 238 163 0 41 chr9 136158742 136158791 -6112653 + Alu SINE Alu 243 289 -10 2421 60 0 0 chr9 136158810 136159115 -6112329 - AluY SINE Alu 0 305 1 426 157 39 111 chr9 136159115 136159190 -6112254 - MER69 DNA AcHobo -227 2299 2239 2204 128 0 0 chr9 136159190 136159487 -6111957 - AluSx SINE Alu -15 297 1 426 157 39 111 chr9 136159487 136159564 -6111880 - MER69 DNA AcHobo -287 2239 2158 1996 184 87 132 chr9 136159568 136159786 -6111658 - L1MD2 LINE L1 -4 6355 6129 195 42 0 0 chr9 136159786 136159810 -6111634 + (TG)n Simple_repeat Simple_repeat 1 24 0 1996 184 87 132 chr9 136159810 136160385 -6111059 - L1MD2 LINE L1 -230 6129 5604 2637 57 0 10 chr9 136160385 136160699 -6110745 - AluY SINE Alu 0 311 1 1996 184 87 132 chr9 136160699 136160725 -6110719 - L1MD2 LINE L1 -755 5604 5578 * 17965 22 1 0 chr9 136160713 136163687 -6107757 + L1HS LINE L1 3179 6154 -1 2456 84 3 0 chr9 136163712 136164020 -6107424 + AluY SINE Alu 1 309 -2 1286 184 64 11 chr9 136164024 136164306 -6107138 - L1MD2 LINE L1 -650 5592 5296 473 184 167 0 chr9 136164318 136164432 -6107012 - AluJb SINE Alu -179 133 1 2270 102 3 10 chr9 136164439 136164742 -6106702 - AluSq SINE Alu -12 301 1 1573 214 19 54 chr9 136164771 136165234 -6106210 - L1MD2 LINE L1 -824 5322 4876 206 294 15 0 chr9 136165337 136165405 -6106039 + CT-rich Low_complexity Low_complexity 1 69 0 373 286 80 25 chr9 136166586 136166785 -6104659 - Charlie8 DNA MER1_type -2193 224 15 214 176 39 0 chr9 136166798 136166849 -6104595 + MIR SINE MIR 81 133 -75 1230 149 0 21 chr9 136166936 136167124 -6104320 + AluJo SINE Alu 3 186 -126 543 270 135 0 chr9 136167494 136167694 -6103750 - MLT1D LTR MaLR 0 505 279 263 85 0 21 chr9 136167716 136167763 -6103681 - MADE1 DNA Mariner 0 80 35 2225 132 3 0 chr9 136167767 136168077 -6103367 + AluSx SINE Alu 1 311 -1 327 263 107 72 chr9 136168341 136168498 -6102946 - L1MC4 LINE L1 -730 7231 7081 2578 72 3 0 chr9 136168498 136168802 -6102642 + AluY SINE Alu 1 305 -6 327 263 107 72 chr9 136168802 136169597 -6101847 - L1MC4 LINE L1 -880 7081 6240 1993 138 3 3 chr9 136169597 136169917 -6101527 + AluSx SINE Alu 1 320 0 327 263 107 72 chr9 136169917 136170221 -6101223 - L1MC4 LINE L1 -1721 6240 5948 1420 205 21 21 chr9 136170278 136170556 -6100888 - MER89 LTR ERV1 -222 337 57 2360 115 0 0 chr9 136170556 136170861 -6100583 - AluSx SINE Alu -7 305 1 1420 205 21 21 chr9 136170861 136170919 -6100525 - MER89 LTR ERV1 -501 58 1 216 205 0 0 chr9 136171034 136171073 -6100371 + MIR SINE MIR 126 164 -98 1260 181 140 51 chr9 136171137 136171561 -6099883 - MER31B LTR ERV1 0 543 6 2214 78 39 4 chr9 136172671 136172952 -6098492 + AluSx SINE Alu 1 291 -21 2315 85 0 0 chr9 136172973 136173290 -6098154 + AluY SINE Alu 1 317 0 262 269 92 40 chr9 136173528 136173684 -6097760 - MIR3 SINE MIR -45 163 40 2285 110 7 0 chr9 136174087 136174397 -6097047 - AluSq SINE Alu -1 312 1 864 240 103 23 chr9 136174642 136174992 -6096452 - MER39 LTR ERV1 0 707 330 200 222 0 0 chr9 136175089 136175125 -6096319 + L2 LINE L2 3226 3261 -11 1921 140 68 0 chr9 136175609 136175902 -6095542 + AluSq SINE Alu 1 313 0 295 236 14 0 chr9 136176143 136176215 -6095229 - MER69 DNA AcHobo -3 2523 2451 1904 157 3 3 chr9 136178658 136178963 -6092481 - AluJb SINE Alu -7 305 1 184 246 246 0 chr9 136179223 136179292 -6092152 + L2 LINE L2 3183 3268 -4 237 330 0 32 chr9 136179374 136179468 -6091976 - MIR SINE MIR 0 262 172 233 188 0 42 chr9 136179934 136179989 -6091455 - MIR SINE MIR -61 147 102 507 297 110 0 chr9 136180095 136180277 -6091167 + L2 LINE L2 3112 3313 0 326 233 58 0 chr9 136181001 136181087 -6090357 + MIR3 SINE MIR 110 200 -8 421 307 94 24 chr9 136181381 136181593 -6089851 + MIR SINE MIR 24 250 -12 196 307 33 73 chr9 136181644 136181794 -6089650 - L2 LINE L2 -6 3266 3123 240 300 0 39 chr9 136182414 136182544 -6088900 + L1ME4a LINE L1 5992 6116 -5 309 418 12 6 chr9 136182551 136182721 -6088723 - L3b LINE CR1 -120 1463 1293 2127 125 0 3 chr9 136183723 136184028 -6087416 + AluSx SINE Alu 1 304 -8 1304 129 57 14 chr9 136184687 136184897 -6086547 - AluJb SINE Alu -7 305 87 2258 99 10 13 chr9 136185450 136185763 -6085681 - AluSx SINE Alu 0 312 1 434 332 30 40 chr9 136185768 136185967 -6085477 - MIR SINE MIR -48 214 18 183 276 276 0 chr9 136186360 136186447 -6084997 + MIR SINE MIR 117 227 -35 274 315 48 62 chr9 136186515 136186579 -6084865 - MER5A DNA MER1_type -1 188 125 2123 116 0 7 chr9 136186579 136186880 -6084564 + AluSx SINE Alu 1 299 -13 274 315 48 62 chr9 136186880 136186961 -6084483 - MER5A DNA MER1_type -64 125 45 1456 170 36 75 chr9 136187140 136187487 -6083957 - MLT1A2 LTR MaLR 0 374 41 786 162 0 0 chr9 136187487 136187631 -6083813 + FLAM_C SINE Alu 1 144 0 1456 170 36 75 chr9 136187631 136187671 -6083773 - MLT1A2 LTR MaLR -333 41 1 381 313 28 0 chr9 136187671 136187815 -6083629 - L3 LINE CR1 -197 1380 1233 21 0 0 0 chr9 136187989 136188010 -6083434 + AT_rich Low_complexity Low_complexity 1 21 0 368 310 249 19 chr9 136188138 136188351 -6083093 - MIR SINE MIR 0 262 1 1898 146 36 3 chr9 136188503 136188804 -6082640 - AluJb SINE Alu -1 311 1 927 123 0 0 chr9 136189003 136189157 -6082287 + (TCCA)n Simple_repeat Simple_repeat 2 155 0 420 293 32 13 chr9 136192143 136192300 -6079144 - MER117 DNA MER1_type -37 160 1 3964 158 64 15 chr9 136192416 136192592 -6078852 + L1MB7 LINE L1 5127 5293 -891 2297 105 0 0 chr9 136192592 136192898 -6078546 + AluSq SINE Alu 3 308 -5 2195 128 0 3 chr9 136192898 136193211 -6078233 + AluSx SINE Alu 1 312 0 3964 158 64 15 chr9 136193211 136193232 -6078212 + L1MB7 LINE L1 5293 5312 -872 2298 87 7 3 chr9 136193232 136193541 -6077903 + AluY SINE Alu 1 310 -1 3964 158 64 15 chr9 136193541 136194356 -6077088 + L1MB7 LINE L1 5312 6184 0 360 248 29 9 chr9 136194814 136194919 -6076525 + MIR SINE MIR 34 140 -122 522 0 0 0 chr9 136195772 136195830 -6075614 + (CA)n Simple_repeat Simple_repeat 2 59 0 333 283 28 28 chr9 136196625 136196731 -6074713 - L1ME3A LINE L1 -222 5948 5843 429 194 65 0 chr9 136196749 136196842 -6074602 + MER3 DNA MER1_type 1 99 -110 2365 94 0 0 chr9 136196857 136197165 -6074279 - AluSg SINE Alu -2 308 1 1652 189 20 0 chr9 136197175 136197481 -6073963 - AluJo SINE Alu 0 312 1 529 228 0 0 chr9 136197481 136197595 -6073849 + MER3 DNA MER1_type 87 200 -9 526 355 86 6 chr9 136197625 136198104 -6073340 - L1ME3A LINE L1 -338 5832 5316 180 351 11 43 chr9 136198276 136198370 -6073074 + L2 LINE L2 3218 3308 -5 262 267 69 55 chr9 136198512 136198932 -6072512 + L1M4 LINE L1 2738 3163 -2983 498 315 20 0 chr9 136199057 136199226 -6072218 + MIR3 SINE MIR 35 208 0 2211 103 0 3 chr9 136199515 136199815 -6071629 + AluSq SINE Alu 1 299 -14 411 296 53 12 chr9 136200431 136200612 -6070832 + MIR SINE MIR 24 214 -48 254 330 8 68 chr9 136201104 136201222 -6070222 - L2 LINE L2 0 3313 3203 266 233 33 0 chr9 136201463 136201523 -6069921 + L2 LINE L2 3252 3313 0 1417 223 93 32 chr9 136201773 136202213 -6069231 - MLT1C LTR MaLR 0 467 1 1189 149 50 137 chr9 136202289 136202440 -6069004 + L1MA10 LINE L1 5947 6110 -224 2396 69 0 3 chr9 136202440 136202744 -6068700 + AluSq SINE Alu 1 303 -10 1189 149 50 137 chr9 136202744 136202879 -6068565 + L1MA10 LINE L1 6110 6187 -147 1839 156 14 0 chr9 136202879 136203167 -6068277 - AluJb SINE Alu -20 292 1 1189 149 50 137 chr9 136203167 136203301 -6068143 + L1MA10 LINE L1 6187 6331 -3 1412 135 20 29 chr9 136203324 136203569 -6067875 + AluJo SINE Alu 36 278 -34 2228 109 10 0 chr9 136203896 136204200 -6067244 - AluSx SINE Alu -5 307 1 200 149 21 0 chr9 136204610 136204657 -6066787 + (CTGGGG)n Simple_repeat Simple_repeat 3 50 0 202 270 68 54 chr9 136205038 136205112 -6066332 + MIR SINE MIR 70 144 -64 359 300 66 53 chr9 136205531 136205758 -6065686 + L2 LINE L2 3083 3312 -1 200 35 35 0 chr9 136206898 136206927 -6064517 + (TCC)n Simple_repeat Simple_repeat 3 32 0 2270 78 0 0 chr9 136207659 136207967 -6063477 - AluSc SINE Alu 0 308 1 2269 97 0 13 chr9 136207972 136208281 -6063163 - AluY SINE Alu -6 305 1 1045 96 0 0 chr9 136208281 136208416 -6063028 - AluSq/x SINE Alu -177 135 1 524 302 19 33 chr9 136208417 136208632 -6062812 + L2 LINE L2 2273 2484 -830 259 386 33 19 chr9 136208691 136208901 -6062543 + MIR SINE MIR 50 262 0 208 265 78 29 chr9 136209630 136209732 -6061712 - L3 LINE CR1 0 1577 1471 515 211 14 8 chr9 136211381 136211739 -6059705 + GA-rich Low_complexity Low_complexity 1 360 0 664 167 58 6 chr9 136212256 136212412 -6059032 + MER96B DNA MER1_type? 6 169 -248 24 0 0 0 chr9 136213376 136213400 -6058044 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 136214653 136214675 -6056769 + GC_rich Low_complexity Low_complexity 1 22 0 410 0 20 0 chr9 136215706 136215756 -6055688 + (CA)n Simple_repeat Simple_repeat 1 51 0 464 92 0 26 chr9 136218278 136218354 -6053090 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 328 266 65 16 chr9 136221828 136221952 -6049492 - MIR SINE MIR -59 149 20 221 322 21 0 chr9 136222340 136222483 -6048961 + (CA)n Simple_repeat Simple_repeat 2 147 0 305 316 228 0 chr9 136223087 136223280 -6048164 + MIR SINE MIR 14 250 -12 22 0 0 0 chr9 136224833 136224855 -6046589 + GC_rich Low_complexity Low_complexity 1 22 0 513 269 69 12 chr9 136230714 136230874 -6040570 - MIR SINE MIR -50 212 44 279 248 200 21 chr9 136231017 136231194 -6040250 + MIR SINE MIR 7 207 -55 183 315 139 9 chr9 136231231 136231339 -6040105 - MIR SINE MIR -69 139 18 338 322 84 40 chr9 136232857 136233059 -6038385 - L1M4 LINE L1 -952 5194 4984 701 236 31 46 chr9 136233331 136233526 -6037918 - MIR SINE MIR -66 196 5 182 296 0 0 chr9 136234820 136234864 -6036580 - L3 LINE CR1 -10 1567 1524 291 248 39 47 chr9 136234916 136235045 -6036399 + MIR3 SINE MIR 2 129 -79 529 320 142 34 chr9 136235147 136235563 -6035881 + L3 LINE CR1 463 923 -654 292 213 277 11 chr9 136235542 136235636 -6035808 + MIR SINE MIR 33 151 -111 * 188 353 35 0 chr9 136236133 136236218 -6035226 + L3 LINE CR1 1209 1296 -281 235 320 64 0 chr9 136236663 136236741 -6034703 - MIR SINE MIR -178 84 2 204 310 56 0 chr9 136236845 136236916 -6034528 + MIR SINE MIR 67 141 -67 385 257 46 40 chr9 136239390 136239459 -6031985 - L2 LINE L2 0 3313 3246 744 226 73 64 chr9 136239459 136239693 -6031751 + MER46A DNA MER2_type 1 236 0 385 257 46 40 chr9 136239693 136239775 -6031669 - L2 LINE L2 -67 3246 3161 238 263 76 17 chr9 136240177 136240295 -6031149 - L2 LINE L2 -1285 2029 1905 351 297 99 12 chr9 136240730 136240926 -6030518 - MIR SINE MIR -23 239 30 194 229 49 33 chr9 136240928 136240989 -6030455 - L2 LINE L2 -2183 1131 1070 655 215 121 20 chr9 136241846 136241995 -6029449 - AluJo SINE Alu -2 300 137 2354 100 0 0 chr9 136243786 136244087 -6027357 - AluSg SINE Alu -9 301 1 824 108 0 0 chr9 136244803 136244914 -6026530 - AluJo SINE Alu -180 132 22 183 231 19 58 chr9 136245494 136245546 -6025898 + L2 LINE L2 2776 2825 -489 312 220 17 0 chr9 136246707 136246766 -6024678 + L2 LINE L2 3213 3272 0 1387 149 138 35 chr9 136247089 136247350 -6024094 - AluJo SINE Alu -24 288 1 2237 100 0 0 chr9 136247579 136247870 -6023574 + AluSq SINE Alu 1 291 -22 750 255 106 53 chr9 136251118 136251681 -6019763 + L2 LINE L2 2607 3310 -3 21 0 0 0 chr9 136254046 136254067 -6017377 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 136254587 136254616 -6016828 + AT_rich Low_complexity Low_complexity 1 29 0 351 328 167 20 chr9 136256273 136256471 -6014973 - MIR SINE MIR -29 233 7 215 203 95 81 chr9 136256893 136256967 -6014477 + MIR SINE MIR 16 90 -118 2183 119 3 0 chr9 136257013 136257307 -6014137 + AluSx SINE Alu 1 295 -17 257 291 63 0 chr9 136257358 136257437 -6014007 - MIR SINE MIR -77 185 102 2459 92 10 0 chr9 136257440 136257744 -6013700 + AluSc SINE Alu 1 307 -2 356 189 208 0 chr9 136257844 136257950 -6013494 - MIR SINE MIR -133 129 2 2451 96 0 6 chr9 136258049 136258361 -6013083 + AluSg SINE Alu 1 310 0 483 296 103 20 chr9 136258685 136258888 -6012556 + MIR SINE MIR 7 226 -36 378 0 0 0 chr9 136267856 136267898 -6003546 + (CA)n Simple_repeat Simple_repeat 2 43 0 619 277 122 5 chr9 136268599 136268787 -6002657 - MIR SINE MIR -6 256 47 941 262 151 23 chr9 136268853 136269337 -6002107 + L1MC4a LINE L1 5522 6067 -1741 592 217 58 71 chr9 136269400 136269640 -6001804 + L1MC5 LINE L1 7235 7471 -490 247 217 17 0 chr9 136269724 136269784 -6001660 + HAL1b LINE L1 1238 1298 -50 664 250 20 76 chr9 136269820 136270176 -6001268 - L1MC4 LINE L1 0 8042 7707 1425 193 86 7 chr9 136270183 136270463 -6000981 - AluJb SINE Alu -5 307 6 252 316 48 57 chr9 136270528 136270756 -6000688 - L1MC4 LINE L1 -407 7635 7410 977 253 124 88 chr9 136270981 136271345 -6000099 - L1MC4 LINE L1 0 8042 7693 1559 169 86 7 chr9 136271345 136271624 -5999820 - AluJb SINE Alu -6 306 6 977 253 124 88 chr9 136271624 136272160 -5999284 - L1MC4 LINE L1 -349 7693 7085 791 106 14 78 chr9 136272219 136272361 -5999083 - FLAM_C SINE Alu 0 133 1 2210 125 7 0 chr9 136272426 136272731 -5998713 + AluSq SINE Alu 5 311 -2 288 299 86 46 chr9 136273540 136273739 -5997705 + MIR SINE MIR 1 192 -65 382 330 108 47 chr9 136276801 136277241 -5994203 - L2 LINE L2 -23 3249 2778 1980 138 0 36 chr9 136277262 136277567 -5993877 - AluJo SINE Alu -18 294 1 705 313 58 24 chr9 136279340 136279594 -5991850 - L1ME4a LINE L1 -124 5997 5724 1810 156 28 0 chr9 136279594 136279883 -5991561 - AluJb SINE Alu -15 297 1 705 313 58 24 chr9 136279883 136280008 -5991436 - L1ME4a LINE L1 -397 5724 5605 786 211 70 22 chr9 136280286 136280513 -5990931 - MIR SINE MIR -3 259 22 751 244 83 0 chr9 136281081 136281286 -5990158 - MIR SINE MIR -10 252 31 211 281 62 16 chr9 136281666 136281730 -5989714 + MIR SINE MIR 83 149 -59 444 253 49 43 chr9 136284098 136284260 -5987184 + MER103 DNA DNA 2 164 -2 474 350 71 18 chr9 136285525 136285805 -5985639 - L3 LINE CR1 -2 1575 1281 846 281 118 52 chr9 136285807 136285867 -5985577 + MLT1J LTR MaLR 22 77 -434 904 127 0 8 chr9 136285867 136286001 -5985443 - FLAM_C SINE Alu 0 133 1 846 281 118 52 chr9 136286001 136286399 -5985045 + MLT1J LTR MaLR 77 510 -1 352 284 113 53 chr9 136289460 136289503 -5981941 + L1M4 LINE L1 4054 4093 -2053 2353 95 34 39 chr9 136289503 136289860 -5981584 + THE1A LTR MaLR 1 355 0 352 284 113 53 chr9 136289860 136290085 -5981359 + L1M4 LINE L1 4093 4303 -1843 2573 80 0 0 chr9 136290085 136290398 -5981046 + AluSq SINE Alu 1 313 0 352 284 113 53 chr9 136290398 136290822 -5980622 + L1M4 LINE L1 4303 4794 -1352 21 0 0 0 chr9 136291145 136291166 -5980278 + AT_rich Low_complexity Low_complexity 1 21 0 2200 109 0 3 chr9 136291201 136291485 -5979959 + AluSx SINE Alu 1 283 -29 296 264 38 19 chr9 136294453 136294559 -5976885 - MER103 DNA DNA -56 110 3 1956 96 50 7 chr9 136294910 136295191 -5976253 + AluSq SINE Alu 1 293 -20 479 228 88 0 chr9 136295613 136295749 -5975695 - MER106B DNA MER1_type -1 1058 911 472 231 154 12 chr9 136296998 136297167 -5974277 - L2 LINE L2 0 3313 3121 223 274 147 0 chr9 136298051 136298153 -5973291 + MIR SINE MIR 128 244 -18 562 129 20 0 chr9 136298174 136298275 -5973169 + AluY SINE Alu 2 104 -207 1995 138 10 7 chr9 136298866 136299164 -5972280 + AluSx SINE Alu 1 299 -13 2459 79 0 3 chr9 136299288 136299591 -5971853 + AluY SINE Alu 1 302 -9 193 297 20 40 chr9 136300006 136300107 -5971337 + L3 LINE CR1 425 523 -1054 647 261 166 0 chr9 136300193 136300404 -5971040 + MIR SINE MIR 3 248 -14 961 236 8 12 chr9 136300469 136300727 -5970717 - AluJo SINE Alu -44 268 12 545 305 188 13 chr9 136301041 136301425 -5970019 - L3 LINE CR1 -56 1521 1071 1898 139 3 29 chr9 136301469 136301779 -5969665 + AluJb SINE Alu 2 303 -9 563 286 58 93 chr9 136301800 136302262 -5969182 + L2 LINE L2 2827 3272 0 308 264 11 0 chr9 136302683 136302774 -5968670 + MIR3 SINE MIR 113 204 -4 393 282 173 5 chr9 136302780 136303000 -5968444 - MIR SINE MIR -1 261 5 455 319 22 33 chr9 136303075 136303348 -5968096 - L1M4 LINE L1 -1114 5032 4763 226 214 239 17 chr9 136303444 136303561 -5967883 + L1ME4a LINE L1 5974 6116 -5 1018 125 45 17 chr9 136303561 136303737 -5967707 - AluSg/x SINE Alu -5 307 127 2294 91 13 7 chr9 136303738 136304047 -5967397 - AluSx SINE Alu -1 311 1 200 149 21 0 chr9 136304457 136304504 -5966940 + (CTGGGG)n Simple_repeat Simple_repeat 3 50 0 311 296 23 0 chr9 136305482 136305570 -5965874 + L2 LINE L2 3134 3223 -49 200 35 35 0 chr9 136306745 136306774 -5964670 + (TCC)n Simple_repeat Simple_repeat 3 32 0 1139 201 19 0 chr9 136307374 136307588 -5963856 - AluJb SINE Alu -94 218 1 5742 52 15 42 chr9 136307731 136307774 -5963670 - MER4E LTR ERV1 0 766 723 1992 108 41 0 chr9 136307774 136308070 -5963374 - AluSc SINE Alu 0 307 1 5742 52 15 42 chr9 136308070 136308812 -5962632 - MER4E LTR ERV1 -43 723 1 287 279 47 23 chr9 136308937 136309066 -5962378 - MIR SINE MIR -70 192 61 1665 173 33 10 chr9 136309421 136309721 -5961723 - AluJb SINE Alu -5 307 1 250 153 169 34 chr9 136309833 136309892 -5961552 + MLT1J LTR MaLR 101 167 -344 189 0 0 0 chr9 136310427 136310448 -5960996 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 346 264 8 47 chr9 136310665 136310794 -5960650 + AluSg SINE Alu 1 124 -176 335 297 117 43 chr9 136312037 136312080 -5959364 + L1MC4a LINE L1 4054 4092 -2054 2353 95 34 39 chr9 136312080 136312437 -5959007 + THE1A LTR MaLR 1 355 0 335 297 117 43 chr9 136312437 136312661 -5958783 + L1MC4a LINE L1 4092 4298 -1848 2590 77 0 0 chr9 136312661 136312974 -5958470 + AluSq SINE Alu 1 313 0 335 297 117 43 chr9 136312974 136313389 -5958055 + L1MC4a LINE L1 4298 4794 -1352 21 0 0 0 chr9 136313712 136313733 -5957711 + AT_rich Low_complexity Low_complexity 1 21 0 2241 88 3 11 chr9 136313768 136314080 -5957364 + AluSx SINE Alu 1 310 0 2268 125 0 0 chr9 136314103 136314414 -5957030 + AluSx SINE Alu 1 311 -1 534 271 99 63 chr9 136314440 136314823 -5956621 + L1MC4a LINE L1 5501 5897 -1911 239 320 55 31 chr9 136315937 136316065 -5955379 - MIR SINE MIR -47 215 85 196 265 59 0 chr9 136316299 136316367 -5955077 - MIR SINE MIR -2 260 189 417 241 105 35 chr9 136316417 136316645 -5954799 - L1ME4a LINE L1 -94 6027 5784 336 190 13 13 chr9 136316710 136316789 -5954655 - L1MC4 LINE L1 -13 8029 7951 965 186 93 8 chr9 136316790 136317038 -5954406 - L1MC4a LINE L1 -637 7171 6903 439 291 67 40 chr9 136317651 136317874 -5953570 + MIR SINE MIR 10 238 -24 2327 104 7 3 chr9 136319488 136319797 -5951647 + AluSq SINE Alu 1 310 -3 1052 174 4 61 chr9 136320814 136321044 -5950400 + MER20 DNA MER1_type 3 219 0 545 305 188 13 chr9 136323434 136323818 -5947626 - L3 LINE CR1 -56 1521 1071 1922 136 3 29 chr9 136323862 136324172 -5947272 + AluJb SINE Alu 2 303 -9 563 286 58 93 chr9 136324193 136324655 -5946789 + L2 LINE L2 2827 3272 0 308 264 11 0 chr9 136325076 136325167 -5946277 + MIR3 SINE MIR 113 204 -4 393 282 173 5 chr9 136325173 136325393 -5946051 - MIR SINE MIR -1 261 5 484 330 20 30 chr9 136325468 136325771 -5945673 - L1M4 LINE L1 -1114 5032 4733 226 214 239 17 chr9 136325836 136325953 -5945491 + L1ME4a LINE L1 5974 6116 -5 1992 105 22 44 chr9 136325953 136326131 -5945313 - AluSx SINE Alu -4 308 138 2479 69 0 22 chr9 136326131 136326449 -5944995 - AluY SINE Alu 0 311 1 1992 105 22 44 chr9 136326449 136326585 -5944859 - AluSx SINE Alu -174 138 1 223 344 31 10 chr9 136326659 136326755 -5944689 - L3 LINE CR1 -840 737 640 2145 85 14 11 chr9 136326759 136327076 -5944368 + AluY SINE Alu 1 318 0 736 285 29 20 chr9 136327291 136327537 -5943907 - MIR SINE MIR -12 250 3 4620 122 46 31 chr9 136327889 136328016 -5943428 - MER4E LTR ERV1 -4 775 651 2677 30 0 3 chr9 136328016 136328314 -5943130 - AluY SINE Alu -14 297 1 4620 122 46 31 chr9 136328314 136328950 -5942494 - MER4E LTR ERV1 -128 651 1 217 222 0 0 chr9 136330107 136330152 -5941292 + G-rich Low_complexity Low_complexity 3 47 0 472 231 154 12 chr9 136331181 136331350 -5940094 - L2 LINE L2 0 3313 3121 223 274 147 0 chr9 136332235 136332337 -5939107 + MIR SINE MIR 128 244 -18 2604 44 3 0 chr9 136332357 136332655 -5938789 + AluY SINE Alu 1 299 -12 428 73 0 0 chr9 136333626 136333681 -5937763 - MADE1 DNA Mariner -25 55 1 1675 163 18 7 chr9 136334203 136334486 -5936958 + AluJo SINE Alu 1 286 -26 620 274 161 0 chr9 136334526 136334749 -5936695 - MIR SINE MIR -1 261 3 204 287 20 40 chr9 136334835 136334936 -5936508 - L3 LINE CR1 -1054 523 425 2521 72 0 3 chr9 136335351 136335657 -5935787 - AluY SINE Alu -6 305 1 2010 134 10 7 chr9 136335781 136336079 -5935365 - AluSx SINE Alu -13 299 1 2230 109 0 0 chr9 136336578 136336861 -5934583 + AluSx SINE Alu 1 283 -29 352 286 29 0 chr9 136339831 136339936 -5931508 - MER103 DNA DNA -56 110 3 1956 96 50 7 chr9 136340287 136340568 -5930876 + AluSq SINE Alu 1 293 -20 574 228 102 3 chr9 136340990 136341205 -5930239 - MER106B DNA MER1_type -1 1058 1 1356 133 140 61 chr9 136341300 136341579 -5929865 + AluJb SINE Alu 1 301 -11 2000 122 6 19 chr9 136342053 136342364 -5929080 - AluSx SINE Alu -5 307 1 818 257 200 3 chr9 136343456 136343791 -5927653 + L2 LINE L2 1938 2338 -976 931 259 142 43 chr9 136343792 136344467 -5926977 + L2 LINE L2 2542 3292 -21 2173 123 0 25 chr9 136344467 136344783 -5926661 - AluSx SINE Alu -4 308 1 717 184 0 44 chr9 136344978 136345114 -5926330 - FLAM_A SINE Alu -3 130 1 181 159 45 23 chr9 136345208 136345252 -5926192 - L2 LINE L2 -15 3257 3213 419 341 41 6 chr9 136345534 136345704 -5925740 - MIR SINE MIR -78 184 9 752 175 0 29 chr9 136346220 136346357 -5925087 + FLAM_A SINE Alu 1 133 0 566 215 49 49 chr9 136347567 136347730 -5923714 - L1MC5 LINE L1 -36 7925 7763 417 281 39 16 chr9 136348152 136348280 -5923164 - MIR3 SINE MIR -49 159 29 872 134 47 0 chr9 136349500 136349627 -5921817 + AluSg SINE Alu 1 133 -177 1977 125 17 7 chr9 136349627 136349922 -5921522 + AluSx SINE Alu 1 298 -14 22 56 0 0 chr9 136351375 136351411 -5920033 + AT_rich Low_complexity Low_complexity 1 36 0 356 269 78 14 chr9 136353651 136353792 -5917652 + L2 LINE L2 3164 3313 0 219 139 0 0 chr9 136354842 136354878 -5916566 - MER5A DNA MER1_type -21 168 133 2362 75 41 0 chr9 136354889 136355181 -5916263 + AluY SINE Alu 1 304 -7 473 312 7 21 chr9 136355200 136355341 -5916103 - MER5A DNA MER1_type -50 139 1 372 195 12 12 chr9 136356487 136356569 -5914875 + MER58C DNA MER1_type 120 201 -14 843 297 81 18 chr9 136356574 136357139 -5914305 + L1MEc LINE L1 1139 1739 -4657 2411 141 29 50 chr9 136357220 136357675 -5913769 + MER65A LTR ERV1 1 445 0 7631 190 89 73 chr9 136357742 136358262 -5913182 + MER65A-int LTR ERV1 71 581 -4290 2419 92 0 0 chr9 136358262 136358555 -5912889 + AluSc SINE Alu 1 293 -16 7631 190 89 73 chr9 136358555 136358963 -5912481 + MER65A-int LTR ERV1 581 981 -3890 2386 93 0 3 chr9 136358963 136359264 -5912180 - AluSq SINE Alu -13 300 1 7631 190 89 73 chr9 136359264 136360220 -5911224 + MER65A-int LTR ERV1 981 1920 -2951 2336 110 3 0 chr9 136360220 136360521 -5910923 - AluSx SINE Alu -10 302 1 7631 190 89 73 chr9 136360521 136360808 -5910636 + MER65A-int LTR ERV1 1920 2201 -2670 2380 106 0 0 chr9 136360808 136361110 -5910334 + AluSg SINE Alu 1 302 -8 7631 190 89 73 chr9 136361110 136361331 -5910113 + MER65A-int LTR ERV1 2201 2506 -2365 1702 152 79 94 chr9 136361395 136362108 -5909336 + MER4B-int LTR ERV1 1517 2239 -4359 1923 163 10 0 chr9 136362108 136362397 -5909047 - AluJb SINE Alu -20 292 1 1702 152 79 94 chr9 136362397 136362451 -5908993 + MER4B-int LTR ERV1 2239 3471 -3127 293 231 58 19 chr9 136362534 136362638 -5908806 + MER4B-int LTR ERV1 2369 2476 -4282 554 217 54 43 chr9 136362733 136362917 -5908527 + MER4B-int LTR ERV1 3545 3730 -2868 818 98 11 87 chr9 136362997 136363180 -5908264 + MER4B-int LTR ERV1 3730 3898 -2700 1771 178 0 14 chr9 136363208 136363500 -5907944 - AluJb SINE Alu -20 292 5 195 129 0 0 chr9 136363547 136363578 -5907866 + (TC)n Simple_repeat Simple_repeat 1 31 0 2093 146 0 3 chr9 136363578 136363879 -5907565 - AluSx SINE Alu -12 300 1 970 190 82 64 chr9 136363901 136364290 -5907154 + MER4B-int LTR ERV1 4027 4422 -1909 917 306 51 36 chr9 136364413 136364478 -5906966 + HERV16 LTR ERVL 2199 2262 -2734 2140 130 0 7 chr9 136364478 136364786 -5906658 + AluSx SINE Alu 1 306 -6 917 306 51 36 chr9 136364786 136365168 -5906276 + HERV16 LTR ERVL 2262 2653 -2343 2013 137 17 10 chr9 136365311 136365604 -5905840 + AluSx SINE Alu 1 295 -17 1042 314 104 15 chr9 136365859 136366340 -5905104 + HERV16 LTR ERVL 2643 3166 -2488 325 215 101 0 chr9 136366348 136366427 -5905017 + L1M4 LINE L1 4106 4192 -1954 915 175 0 34 chr9 136366428 136366605 -5904839 + FRAM SINE Alu 1 171 -5 1189 132 9 88 chr9 136366635 136366863 -5904581 + AluJo SINE Alu 87 296 -16 571 273 3 0 chr9 136366945 136367119 -5904325 + L1ME1 LINE L1 5662 5838 -326 252 262 103 16 chr9 136367120 136367246 -5904198 + LTR41 LTR ERVL 1 137 -636 2451 77 3 13 chr9 136367248 136367561 -5903883 + AluSg SINE Alu 1 310 0 408 243 9 18 chr9 136367771 136367882 -5903562 - MER81 DNA DNA -1 113 4 449 265 105 11 chr9 136368533 136368766 -5902678 - L1ME LINE L1 -585 5579 5316 1430 165 113 0 chr9 136368766 136369032 -5902412 + AluJo SINE Alu 1 296 -6 449 265 105 11 chr9 136369032 136369077 -5902367 - L1ME LINE L1 -848 5316 5277 2352 245 140 8 chr9 136369125 136369964 -5901480 - L1ME3 LINE L1 -3 6159 5211 210 143 71 0 chr9 136370290 136370332 -5901112 + CT-rich Low_complexity Low_complexity 4 48 0 1967 142 4 0 chr9 136370335 136370609 -5900835 - AluSx SINE Alu -37 275 1 358 293 49 16 chr9 136370659 136370782 -5900662 + MER5A DNA MER1_type 5 131 -58 471 0 14 55 chr9 136370782 136370855 -5900589 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 2008 97 8 19 chr9 136370864 136371131 -5900313 - AluSq SINE Alu -49 264 1 2215 106 0 3 chr9 136371139 136371448 -5899996 - AluSg SINE Alu 0 308 1 2208 188 32 11 chr9 136371565 136371907 -5899537 + L1M4 LINE L1 4928 5261 -917 2138 109 3 45 chr9 136371907 136372219 -5899225 + AluSc SINE Alu 1 299 -10 2208 188 32 11 chr9 136372219 136372600 -5898844 + L1M4 LINE L1 5261 5677 -501 2340 101 0 0 chr9 136372602 136372898 -5898546 + AluSg SINE Alu 1 296 -14 1231 107 0 25 chr9 136372912 136373109 -5898335 - MSTA LTR MaLR -236 192 1 2162 108 17 0 chr9 136373345 136373633 -5897811 - AluSx SINE Alu -19 293 1 25 83 0 0 chr9 136373636 136373696 -5897748 + AT_rich Low_complexity Low_complexity 1 60 0 5719 150 126 43 chr9 136373739 136374943 -5896501 - MER52A LTR ERV1 0 1755 452 388 228 12 18 chr9 136375025 136375137 -5896307 - MER52A LTR ERV1 -1184 102 1 941 77 0 46 chr9 136375516 136375677 -5895767 - AluYa5 SINE Alu 0 311 157 215 323 79 3 chr9 136376433 136376607 -5894837 + MIR SINE MIR 11 196 -66 691 222 51 11 chr9 136376836 136377012 -5894432 - MER3 DNA MER1_type -26 183 1 2484 90 0 6 chr9 136377027 136377339 -5894105 - AluSg SINE Alu 0 310 1 329 302 77 21 chr9 136377363 136377598 -5893846 - MIR SINE MIR -14 248 1 466 171 0 27 chr9 136378292 136378403 -5893041 + CT-rich Low_complexity Low_complexity 3 110 0 1602 118 179 11 chr9 136378403 136378665 -5892779 - AluSg1 SINE Alu -3 306 1 240 377 0 47 chr9 136378703 136378809 -5892635 - L2 LINE L2 -38 3234 3134 2215 194 78 4 chr9 136379649 136380112 -5891332 + MER74B LTR ERVL 57 553 -69 255 226 157 29 chr9 136380036 136380138 -5891306 - MER54A LTR ERVL -464 437 323 * 448 305 63 6 chr9 136380466 136380640 -5890804 + MIR SINE MIR 31 214 -48 1454 179 90 18 chr9 136381000 136381279 -5890165 - AluJb SINE Alu -13 299 1 398 209 22 13 chr9 136381297 136381477 -5889967 + MER20 DNA MER1_type 2 219 0 206 167 24 0 chr9 136381856 136381898 -5889546 + (CAA)n Simple_repeat Simple_repeat 3 45 0 907 141 141 0 chr9 136382051 136382221 -5889223 + Ricksha DNA DNA 143 336 -1710 185 339 40 40 chr9 136382617 136382741 -5888703 + MER5A DNA MER1_type 5 128 -61 3040 206 42 28 chr9 136383135 136383894 -5887550 + Ricksha_b DNA DNA 69 838 -416 634 96 0 0 chr9 136383894 136383988 -5887456 + FLAM_A SINE Alu 45 138 -4 1951 172 19 19 chr9 136383990 136384478 -5886966 + Ricksha_b DNA DNA 831 1643 -13 420 286 103 42 chr9 136384546 136384857 -5886587 + MLT1K LTR MaLR 137 466 -122 320 281 196 20 chr9 136386066 136386219 -5885225 + MER5A DNA MER1_type 9 188 -1 196 344 28 67 chr9 136386226 136386406 -5885038 + MER5B DNA MER1_type 3 175 -3 561 231 31 0 chr9 136386422 136386552 -5884892 - MER5B DNA MER1_type -7 171 38 1765 167 11 7 chr9 136386552 136386833 -5884611 + AluJo SINE Alu 3 284 -28 2158 124 0 3 chr9 136386843 136387133 -5884311 + AluSx SINE Alu 1 289 -23 281 167 0 0 chr9 136387144 136387192 -5884252 + MER5B DNA MER1_type 131 178 0 1781 180 29 53 chr9 136387596 136387952 -5883492 + L1MB4 LINE L1 5427 5790 -390 1725 135 145 0 chr9 136387952 136388256 -5883188 - MER7A DNA MER2_type 0 346 1 1781 180 29 53 chr9 136388256 136388282 -5883162 + L1MB4 LINE L1 5790 5801 -379 2342 100 0 7 chr9 136388282 136388582 -5882862 - AluSx SINE Alu -12 300 3 1781 180 29 53 chr9 136388582 136388609 -5882835 + L1MB4 LINE L1 5801 5827 -353 389 266 65 0 chr9 136389176 136389300 -5882144 + FLAM_A SINE Alu 2 133 0 2218 110 7 7 chr9 136389777 136390085 -5881359 - AluSx SINE Alu -4 308 1 876 257 200 3 chr9 136391177 136391512 -5879932 + L2 LINE L2 1938 2338 -976 437 299 176 27 chr9 136391513 136391774 -5879670 + L2 LINE L2 2542 2841 -473 2248 97 3 0 chr9 136392382 136392670 -5878774 - AluSx SINE Alu -23 289 1 256 133 50 0 chr9 136392670 136392730 -5878714 + L1MB7 LINE L1 6112 6174 -10 201 74 0 0 chr9 136392749 136392776 -5878668 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 2343 55 0 31 chr9 136393165 136393280 -5878164 + AluY SINE Alu 21 138 -173 477 0 0 0 chr9 136393280 136393333 -5878111 + (TA)n Simple_repeat Simple_repeat 2 54 0 2343 55 0 31 chr9 136393333 136393510 -5877934 + AluY SINE Alu 138 304 -7 23 0 0 0 chr9 136393663 136393686 -5877758 + AT_rich Low_complexity Low_complexity 1 23 0 2174 94 29 0 chr9 136393686 136394013 -5877431 + AluSx SINE Alu 1 335 0 234 278 72 10 chr9 136394151 136394248 -5877196 + L2 LINE L2 3210 3312 -1 233 29 29 0 chr9 136394357 136394391 -5877053 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2063 130 3 7 chr9 136394393 136394692 -5876752 - AluSx SINE Alu -14 298 1 189 0 0 0 chr9 136394909 136394930 -5876514 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 233 153 169 34 chr9 136395285 136395344 -5876100 - MLT1J LTR MaLR -344 167 101 1761 166 33 10 chr9 136395456 136395757 -5875687 + AluJb SINE Alu 1 308 -4 233 366 30 0 chr9 136395903 136396004 -5875440 - L1MC/D LINE L1 -2198 5610 5507 337 298 32 8 chr9 136396116 136396240 -5875204 + MIR SINE MIR 66 192 -70 5409 53 15 42 chr9 136396365 136397107 -5874337 + MER4E LTR ERV1 1 723 -43 2045 100 41 0 chr9 136397107 136397403 -5874041 + AluSc SINE Alu 1 307 0 5409 53 15 42 chr9 136397403 136397446 -5873998 + MER4E LTR ERV1 723 766 0 1958 138 13 13 chr9 136397589 136397887 -5873557 + AluJb SINE Alu 1 298 -14 236 245 0 0 chr9 136398127 136398176 -5873268 - MER5B DNA MER1_type 0 178 130 563 154 8 34 chr9 136398186 136398303 -5873141 - AluSg/x SINE Alu -23 286 173 533 265 65 8 chr9 136398309 136398554 -5872890 - AluY SINE Alu -51 260 2 2054 116 11 42 chr9 136398557 136398583 -5872861 + L1MB3 LINE L1 5806 5831 -352 2272 77 42 0 chr9 136398583 136398870 -5872574 + AluY SINE Alu 1 299 -12 2054 116 11 42 chr9 136398870 136399223 -5872221 + L1MB3 LINE L1 5831 6173 -10 1994 236 60 12 chr9 136399399 136399984 -5871460 + L1M4 LINE L1 3572 4184 -1962 2434 82 0 0 chr9 136400125 136400419 -5871025 - AluY SINE Alu -17 294 1 23 33 0 0 chr9 136400484 136400514 -5870930 + AT_rich Low_complexity Low_complexity 1 30 0 1851 152 16 20 chr9 136400820 136401123 -5870321 - AluJb SINE Alu -10 302 1 2260 112 33 3 chr9 136401236 136401540 -5869904 + AluSq SINE Alu 1 313 0 705 193 0 15 chr9 136401679 136401814 -5869630 + FLAM_A SINE Alu 1 133 0 439 291 184 11 chr9 136402023 136402202 -5869242 + MER63A DNA MER1_type 1 210 0 596 248 35 58 chr9 136402275 136402501 -5868943 - MIR SINE MIR -28 234 14 186 43 0 0 chr9 136403699 136403722 -5867722 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1031 168 23 9 chr9 136403738 136403952 -5867492 - L1MB8 LINE L1 -38 6140 5924 239 276 0 0 chr9 136403996 136404054 -5867390 + MIR SINE MIR 161 218 -44 707 205 20 0 chr9 136404083 136404234 -5867210 - L1MB8 LINE L1 -290 5894 5741 1886 145 24 27 chr9 136404236 136404532 -5866912 - AluJb SINE Alu -11 301 7 425 325 94 0 chr9 136404858 136405061 -5866383 - MIR SINE MIR -40 222 1 393 306 19 32 chr9 136405767 136405924 -5865520 - MIR SINE MIR -14 248 94 216 171 0 0 chr9 136408278 136408313 -5863131 + (CA)n Simple_repeat Simple_repeat 1 35 0 183 355 168 0 chr9 136409038 136409145 -5862299 - MIR SINE MIR -42 220 96 2224 91 0 47 chr9 136409221 136409519 -5861925 - AluSc SINE Alu -24 285 2 1968 101 65 4 chr9 136409520 136409798 -5861646 - AluSx SINE Alu -17 295 1 32 0 0 0 chr9 136409815 136409847 -5861597 + AT_rich Low_complexity Low_complexity 1 32 0 2103 94 64 0 chr9 136409901 136410196 -5861248 + AluSq SINE Alu 1 312 0 435 241 9 35 chr9 136410601 136410717 -5860727 - L2 LINE L2 0 3272 3160 2309 71 7 0 chr9 136410938 136411239 -5860205 - AluSq SINE Alu 0 305 3 373 339 35 17 chr9 136411265 136411439 -5860005 - MIR SINE MIR -48 214 38 237 338 0 0 chr9 136411559 136411630 -5859814 - MIR SINE MIR -70 192 122 2210 82 0 0 chr9 136412217 136412486 -5858958 - AluSx SINE Alu -43 269 1 2428 82 16 0 chr9 136413170 136413473 -5857971 + AluSx SINE Alu 2 309 -3 460 125 62 0 chr9 136413544 136413624 -5857820 + AluSg/x SINE Alu 213 297 -13 2225 122 6 10 chr9 136413898 136414209 -5857235 - AluSx SINE Alu -2 310 1 249 257 125 44 chr9 136414236 136414323 -5857121 + L1ME4a LINE L1 5968 6071 -50 2504 61 7 0 chr9 136414323 136414620 -5856824 - AluY SINE Alu -12 299 1 249 257 125 44 chr9 136414620 136414668 -5856776 + L1ME4a LINE L1 6071 6114 -7 509 300 138 49 chr9 136414692 136415119 -5856325 + L2 LINE L2 2849 3313 0 196 232 54 0 chr9 136415255 136415311 -5856133 - MIR SINE MIR -131 131 73 299 317 117 11 chr9 136415927 136416107 -5855337 - MIR SINE MIR -63 199 1 2407 101 3 0 chr9 136416858 136417166 -5854278 - AluSq SINE Alu 0 313 5 224 239 60 138 chr9 136417514 136417681 -5853763 + L2 LINE L2 3119 3272 0 2365 89 3 0 chr9 136417840 136418132 -5853312 - AluSq SINE Alu -15 298 6 255 313 30 30 chr9 136419616 136419715 -5851729 - MIR SINE MIR -56 206 108 318 292 31 68 chr9 136420404 136420508 -5850936 - L1ME LINE L1 -648 5514 5419 2011 134 0 29 chr9 136420508 136420821 -5850623 - AluSx SINE Alu 0 312 9 318 292 31 68 chr9 136420821 136420908 -5850536 - L1ME LINE L1 -743 5419 5330 385 129 0 29 chr9 136420915 136420985 -5850459 - L1MB7 LINE L1 -4 6180 6113 1809 156 10 3 chr9 136420986 136421293 -5850151 + AluJb SINE Alu 1 309 -3 2456 293 72 44 chr9 136421336 136422259 -5849185 - L1ME LINE L1 -803 5343 4447 946 171 13 0 chr9 136422259 136422417 -5849027 - FRAM SINE Alu -6 160 1 2456 293 72 44 chr9 136422417 136423324 -5848120 - L1ME LINE L1 -1699 4447 3458 1970 137 16 0 chr9 136423324 136423631 -5847813 - AluSx SINE Alu 0 312 1 2456 293 72 44 chr9 136423631 136423848 -5847596 - L1ME LINE L1 -2688 3458 3249 365 223 11 0 chr9 136423849 136423943 -5847501 + CT-rich Low_complexity Low_complexity 1 95 0 1986 145 0 0 chr9 136423943 136424239 -5847205 - AluSx SINE Alu -16 296 1 333 237 25 85 chr9 136424240 136424358 -5847086 - L1ME LINE L1 -2877 3269 3159 2523 167 47 33 chr9 136424521 136424717 -5846727 + L1MA4 LINE L1 3 195 -6973 1689 106 106 0 chr9 136424717 136424973 -5846471 + AluSx SINE Alu 27 309 -3 2523 167 47 33 chr9 136424973 136425286 -5846158 + L1MA4 LINE L1 195 519 -6649 * 12868 145 33 34 chr9 136425283 136425498 -5845946 + L1MA4 LINE L1 3767 3981 -3340 2420 170 2 12 chr9 136425498 136425903 -5845541 + MER57A LTR ERV1 3 403 0 12868 145 33 34 chr9 136425903 136426087 -5845357 + L1MA4 LINE L1 3981 4164 -3157 1667 169 0 40 chr9 136426087 136426412 -5845032 + AluJb SINE Alu 1 312 0 12868 145 33 34 chr9 136426412 136426818 -5844626 + L1MA4 LINE L1 4164 4569 -2752 296 109 0 0 chr9 136426818 136426864 -5844580 - MADE1 DNA Mariner -34 46 1 12868 145 33 34 chr9 136426864 136427080 -5844364 + L1MA4 LINE L1 4569 4784 -2537 2201 107 3 3 chr9 136427080 136427390 -5844054 + AluSx SINE Alu 1 310 -2 12868 145 33 34 chr9 136427390 136427574 -5843870 + L1MA4 LINE L1 4784 4967 -2354 820 138 0 36 chr9 136427574 136427712 -5843732 + FLAM_A SINE Alu 1 133 0 12868 145 33 34 chr9 136427712 136428195 -5843249 + L1MA4 LINE L1 4967 5449 -1872 1667 187 0 7 chr9 136428195 136428489 -5842955 - AluJo SINE Alu -20 292 1 12868 145 33 34 chr9 136428489 136430324 -5841120 + L1MA4 LINE L1 5449 7316 -5 2247 86 7 0 chr9 136430338 136430640 -5840804 - AluSp SINE Alu -9 304 1 551 269 53 59 chr9 136430657 136430980 -5840464 + L1MC4a LINE L1 5609 5929 -1879 371 256 111 28 chr9 136431239 136431419 -5840025 + MIR3 SINE MIR 2 196 -12 296 271 58 47 chr9 136433135 136433344 -5838100 + MIR3 SINE MIR 13 227 -35 2527 70 48 28 chr9 136433867 136434224 -5837220 - THE1B LTR MaLR 0 364 1 1702 234 112 54 chr9 136434303 136434352 -5837092 + L2 LINE L2 2252 2297 -1016 1621 170 103 20 chr9 136434352 136434710 -5836734 + MLT1B LTR MaLR 1 388 -2 1702 234 112 54 chr9 136434710 136435683 -5835761 + L2 LINE L2 2297 3313 0 471 307 29 0 chr9 136435687 136435827 -5835617 - MIR SINE MIR -113 149 6 338 294 189 0 chr9 136435892 136436093 -5835351 - L2 LINE L2 -219 3053 2815 23 0 0 0 chr9 136436462 136436485 -5834959 + AT_rich Low_complexity Low_complexity 1 23 0 2106 114 6 19 chr9 136437367 136437683 -5833761 - AluSx SINE Alu 0 312 1 648 229 158 0 chr9 136438858 136439041 -5832403 + MER74C LTR ERVL 14 225 -235 308 307 93 0 chr9 136439343 136439483 -5831961 - MIR SINE MIR -20 242 90 195 323 21 32 chr9 136439711 136439804 -5831640 - MIR SINE MIR -111 151 60 23 0 0 0 chr9 136441173 136441196 -5830248 + AT_rich Low_complexity Low_complexity 1 23 0 189 74 0 0 chr9 136441382 136441409 -5830035 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1024 122 0 0 chr9 136441414 136441561 -5829883 - FRAM SINE Alu -30 146 1 204 203 13 114 chr9 136441735 136441814 -5829630 - MIR SINE MIR -72 190 120 252 59 0 0 chr9 136443223 136443257 -5828187 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 33 43 0 0 chr9 136443617 136443664 -5827780 + AT_rich Low_complexity Low_complexity 1 47 0 2279 87 3 0 chr9 136444482 136444781 -5826663 + AluSq SINE Alu 1 300 -13 1838 181 88 44 chr9 136445047 136445523 -5825921 + MLT1D LTR MaLR 7 503 -2 476 306 103 57 chr9 136445784 136446235 -5825209 + HAL1b LINE L1 70 420 -997 2013 116 24 0 chr9 136446312 136446606 -5824838 + AluSx SINE Alu 1 301 -11 236 146 0 21 chr9 136446606 136446654 -5824790 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 447 252 82 51 chr9 136446728 136447022 -5824422 + HAL1b LINE L1 546 848 -569 2212 91 3 0 chr9 136447180 136447477 -5823967 - AluSg SINE Alu -12 298 1 320 215 15 0 chr9 136447809 136447874 -5823570 + HAL1 LINE L1 818 883 -1693 5536 221 66 76 chr9 136447959 136449856 -5821588 + HAL1 LINE L1 1 1878 -629 835 279 62 32 chr9 136449893 136450294 -5821150 + HAL1 LINE L1 1746 2158 -418 543 312 23 23 chr9 136450325 136450540 -5820904 - MLT1J LTR MaLR -295 216 2 246 250 112 0 chr9 136450912 136451028 -5820416 + L1 LINE L1 3648 3776 -2370 2358 59 3 0 chr9 136451090 136451379 -5820065 + AluY SINE Alu 1 290 -21 2113 117 7 0 chr9 136451392 136451700 -5819744 + AluSx SINE Alu 1 310 -2 964 172 112 82 chr9 136451724 136452085 -5819359 - MLT1E2 LTR MaLR -58 447 56 2329 67 3 3 chr9 136452330 136452627 -5818817 - AluY SINE Alu -14 297 1 293 286 54 44 chr9 136452770 136453064 -5818380 + L1ME4a LINE L1 4150 4446 -1700 2176 97 51 38 chr9 136453131 136453501 -5817943 - THE1C LTR MaLR 0 375 1 356 321 77 45 chr9 136453501 136453722 -5817722 + L1ME4a LINE L1 4566 4793 -1353 1889 193 13 17 chr9 136453760 136454222 -5817222 + MER89 LTR ERV1 1 559 0 343 258 30 30 chr9 136454299 136454431 -5817013 + L1ME4a LINE L1 4920 5051 -1095 191 189 81 0 chr9 136454516 136454553 -5816891 - MIR SINE MIR -139 69 30 1524 175 42 2 chr9 136455148 136455459 -5815985 - MLT1A1 LTR MaLR -1 373 1 322 320 84 56 chr9 136456446 136456768 -5814676 + L2 LINE L2 2923 3253 -19 259 278 48 32 chr9 136456850 136456976 -5814468 + MIR SINE MIR 17 144 -64 326 316 151 33 chr9 136457681 136457953 -5813491 - L2 LINE L2 -4 3309 3006 428 259 30 52 chr9 136458115 136458250 -5813194 - MIR3 SINE MIR -34 174 43 753 242 82 68 chr9 136458445 136458800 -5812644 + L1ME4a LINE L1 5562 5921 -200 335 77 0 19 chr9 136458830 136458882 -5812562 + (CA)n Simple_repeat Simple_repeat 2 52 0 223 331 48 40 chr9 136459248 136459372 -5812072 + L2 LINE L2 3188 3312 -1 240 189 21 11 chr9 136461599 136461694 -5809750 + (CA)n Simple_repeat Simple_repeat 2 97 0 2160 97 0 19 chr9 136462984 136463292 -5808152 - AluSx SINE Alu -10 302 1 761 248 29 66 chr9 136463773 136464015 -5807429 - MIR SINE MIR -7 255 23 410 243 57 127 chr9 136464331 136464718 -5806726 + MLT1G LTR MaLR 1 360 -195 618 246 119 19 chr9 136464782 136464994 -5806450 + MLT1G LTR MaLR 313 586 -4 2678 60 11 26 chr9 136464996 136465345 -5806099 - THE1C LTR MaLR -31 344 1 21 0 0 0 chr9 136465432 136465453 -5805991 + AT_rich Low_complexity Low_complexity 1 21 0 250 310 28 36 chr9 136465662 136465789 -5805655 - MIR SINE MIR -63 145 20 2310 70 13 0 chr9 136465894 136466192 -5805252 + AluSc SINE Alu 1 302 -7 252 0 0 0 chr9 136468166 136468194 -5803250 + (TG)n Simple_repeat Simple_repeat 2 29 0 236 320 28 75 chr9 136473057 136473229 -5798215 + L1MC/D LINE L1 5320 5478 -2330 2158 181 94 38 chr9 136473229 136473705 -5797739 + MLT1D LTR MaLR 3 505 0 236 320 28 75 chr9 136473705 136473785 -5797659 + L1MC/D LINE L1 5478 5560 -2248 308 215 15 0 chr9 136473941 136474022 -5797422 - L1MC4 LINE L1 0 8042 7726 2080 118 10 26 chr9 136474295 136474601 -5796843 - AluSx SINE Alu -7 305 5 229 267 105 19 chr9 136475841 136475946 -5795498 + MIR3 SINE MIR 64 177 -31 2225 137 0 3 chr9 136476178 136476491 -5794953 + AluJb SINE Alu 1 312 0 2125 116 18 0 chr9 136477481 136477766 -5793678 + AluSx SINE Alu 23 312 0 185 247 140 43 chr9 136477829 136477922 -5793522 + L2 LINE L2 3170 3271 -1 2296 119 0 3 chr9 136478255 136478566 -5792878 + AluSx SINE Alu 1 310 -2 186 184 26 26 chr9 136478586 136478624 -5792820 - L2 LINE L2 -23 3249 3212 * 603 256 178 6 chr9 136478598 136478778 -5792666 - MIR SINE MIR -29 233 23 4008 264 71 54 chr9 136478781 136480890 -5790554 + L1MEc LINE L1 38 2110 -4105 910 187 32 0 chr9 136480890 136481045 -5790399 + FRAM SINE Alu 1 160 -6 4008 264 71 54 chr9 136481045 136481287 -5790157 + L1MEc LINE L1 2110 2346 -3869 2140 148 30 0 chr9 136481287 136481619 -5789825 - MER2 DNA MER2_type 0 344 3 4008 264 71 54 chr9 136481619 136482102 -5789342 + L1MEc LINE L1 2346 2977 -3238 1587 136 64 4 chr9 136482102 136482353 -5789091 + AluJo SINE Alu 43 308 -4 231 36 0 0 chr9 136482354 136482382 -5789062 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 453 333 101 28 chr9 136482393 136482711 -5788733 - L1ME4a LINE L1 -62 6059 5719 265 317 49 14 chr9 136482722 136482864 -5788580 - L1ME4a LINE L1 -439 5682 5536 21 36 0 0 chr9 136483617 136483645 -5787799 + AT_rich Low_complexity Low_complexity 1 28 0 335 238 71 0 chr9 136483860 136483944 -5787500 - L1MC4 LINE L1 -1339 6703 6614 328 299 23 0 chr9 136483894 136483981 -5787463 + L1MC4 LINE L1 6614 6702 -1340 * 359 315 0 0 chr9 136483982 136484071 -5787373 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 136484072 136484161 -5787283 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 136484162 136484251 -5787193 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 136484252 136484341 -5787103 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 136484342 136484431 -5787013 + L1MC4 LINE L1 6614 6702 -1340 359 315 0 0 chr9 136484432 136484521 -5786923 + L1MC4 LINE L1 6614 6702 -1340 316 280 19 56 chr9 136484522 136484629 -5786815 + L1MC4 LINE L1 6614 6716 -1326 1077 159 27 45 chr9 136486689 136486909 -5784535 - MER20 DNA MER1_type -3 216 1 274 356 7 41 chr9 136487062 136487208 -5784236 - MIR SINE MIR -31 231 91 26 0 0 0 chr9 136487524 136487550 -5783894 + AT_rich Low_complexity Low_complexity 1 26 0 482 312 22 43 chr9 136488273 136488504 -5782940 - MIR SINE MIR -1 261 36 429 235 123 49 chr9 136489510 136489714 -5781730 - MIR SINE MIR -19 243 25 2365 104 0 3 chr9 136491173 136491472 -5779972 - AluSq SINE Alu -15 298 1 338 352 28 0 chr9 136491549 136491728 -5779716 - L1ME LINE L1 -301 5820 5637 870 143 7 14 chr9 136491929 136492069 -5779375 - AluJo SINE Alu -173 139 1 613 320 109 38 chr9 136492086 136492869 -5778575 - L1ME4a LINE L1 -7 6114 5260 288 301 108 17 chr9 136493429 136493605 -5777839 - L1ME4a LINE L1 -1488 4658 4467 1950 155 0 22 chr9 136493989 136494306 -5777138 + AluJo SINE Alu 3 312 0 189 0 0 0 chr9 136494363 136494384 -5777060 + (A)n Simple_repeat Simple_repeat 1 21 0 2211 103 0 13 chr9 136497086 136497386 -5774058 - AluY SINE Alu -15 296 1 389 242 179 54 chr9 136497752 136497922 -5773522 + MIR SINE MIR 12 218 -44 1936 164 3 19 chr9 136497922 136498058 -5773386 + AluJo SINE Alu 1 138 -174 2422 88 3 0 chr9 136498058 136498355 -5773089 + AluSp SINE Alu 1 298 -15 1936 164 3 19 chr9 136498355 136498528 -5772916 + AluJo SINE Alu 138 305 -7 389 242 179 54 chr9 136498528 136498580 -5772864 + MIR SINE MIR 218 262 0 772 150 16 8 chr9 136498769 136498896 -5772548 - FLAM_C SINE Alu -4 129 2 430 252 59 37 chr9 136499041 136499176 -5772268 + MIR SINE MIR 114 251 -11 2441 94 0 3 chr9 136499255 136499563 -5771881 + AluSc SINE Alu 1 307 -2 186 279 12 58 chr9 136500959 136501045 -5770399 + L2 LINE L2 3182 3263 -9 190 370 43 0 chr9 136501046 136501138 -5770306 + MIR SINE MIR 161 256 -6 2184 118 3 3 chr9 136501154 136501460 -5769984 - AluSx SINE Alu -6 306 1 371 132 20 2 chr9 136501961 136502036 -5769408 - MSTC LTR MaLR 0 428 320 2221 93 0 0 chr9 136502056 136502336 -5769108 - AluSx SINE Alu -32 280 1 612 108 0 49 chr9 136502336 136502438 -5769006 - MSTC LTR MaLR -331 97 1 354 23 0 0 chr9 136502620 136502663 -5768781 + (CA)n Simple_repeat Simple_repeat 2 44 0 1890 111 0 0 chr9 136502825 136503068 -5768376 + AluSx SINE Alu 1 243 -69 221 312 54 21 chr9 136503841 136503934 -5767510 + MIR3 SINE MIR 72 167 -41 182 136 23 0 chr9 136504515 136504559 -5766885 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 201 265 0 0 chr9 136504559 136504608 -5766836 - L2 LINE L2 0 3313 3265 231 248 48 38 chr9 136504705 136504810 -5766634 - L2 LINE L2 -205 3067 2962 1827 207 122 20 chr9 136504811 136505323 -5766121 - MLT1E LTR MaLR 0 558 18 2580 123 67 12 chr9 136505323 136505729 -5765715 + MSTA LTR MaLR 1 428 0 1827 207 122 20 chr9 136505729 136505740 -5765704 - MLT1E LTR MaLR -540 18 10 252 86 0 0 chr9 136506512 136506547 -5764897 + (A)n Simple_repeat Simple_repeat 1 35 0 369 273 61 10 chr9 136506977 136507076 -5764368 - MIR3 SINE MIR -21 187 84 414 326 30 7 chr9 136507135 136507270 -5764174 + MIR SINE MIR 48 185 -77 2222 79 45 3 chr9 136507721 136508011 -5763433 + AluSq SINE Alu 1 302 -11 335 273 23 53 chr9 136508567 136508699 -5762745 + L2 LINE L2 3139 3266 -47 300 53 0 0 chr9 136508714 136508752 -5762692 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 1005 126 0 0 chr9 136509898 136510033 -5761411 + AluJb SINE Alu 1 135 -177 1837 164 13 13 chr9 136510033 136510345 -5761099 + AluJo SINE Alu 1 312 0 2466 82 0 7 chr9 136511109 136511415 -5760029 - AluSc SINE Alu -5 304 1 914 254 23 5 chr9 136511493 136511713 -5759731 + MER58A DNA MER1_type 1 224 0 2024 108 7 4 chr9 136511968 136512246 -5759198 - AluSx SINE Alu -25 287 9 1295 102 0 0 chr9 136512262 136512428 -5759016 - AluSg/x SINE Alu -13 297 132 1608 142 22 73 chr9 136512428 136512607 -5758837 - AluJb SINE Alu -12 300 142 2309 107 0 3 chr9 136512607 136512907 -5758537 - AluSx SINE Alu -13 299 1 1608 142 22 73 chr9 136512907 136513043 -5758401 - AluJb SINE Alu -170 142 1 23 0 0 0 chr9 136513103 136513126 -5758318 + AT_rich Low_complexity Low_complexity 1 23 0 1448 211 145 70 chr9 136513905 136514402 -5757042 + L1MDb LINE L1 922 1381 -5159 2148 151 0 0 chr9 136514402 136514538 -5756906 + AluSx SINE Alu 1 136 -176 2373 88 0 3 chr9 136514538 136514834 -5756610 + AluY SINE Alu 1 295 -16 2148 151 0 0 chr9 136514834 136515009 -5756435 + AluSx SINE Alu 135 312 0 1448 211 145 70 chr9 136515009 136515284 -5756160 + L1MDb LINE L1 1381 1717 -4823 2350 107 0 3 chr9 136515284 136515593 -5755851 + AluSx SINE Alu 1 308 -4 1448 211 145 70 chr9 136515593 136515723 -5755721 + L1MDb LINE L1 1717 1836 -4704 1889 147 40 0 chr9 136515724 136516023 -5755421 + AluJo SINE Alu 1 311 -1 436 92 0 15 chr9 136516032 136516097 -5755347 + U6 snRNA snRNA 1 64 -43 261 186 67 3 chr9 136516115 136516192 -5755252 + L1MDb LINE L1 1831 1902 -4638 1564 137 5 5 chr9 136516198 136516417 -5755027 + AluJb SINE Alu 67 285 -27 186 133 0 0 chr9 136516419 136516449 -5754995 + (CATATA)n Simple_repeat Simple_repeat 5 34 0 385 197 183 7 chr9 136516575 136516717 -5754727 + LTR33 LTR ERVL 25 191 -330 411 240 53 13 chr9 136516728 136516878 -5754566 + LTR33 LTR ERVL 366 521 0 184 280 118 94 chr9 136517283 136517612 -5753832 + L2 LINE L2 2849 3185 -87 706 240 39 25 chr9 136517633 136517837 -5753607 - MER63A DNA MER1_type 0 210 4 266 291 128 0 chr9 136517916 136518002 -5753442 - MIR SINE MIR -1 261 165 343 343 37 8 chr9 136518055 136518189 -5753255 + MLT1K LTR MaLR 77 214 -374 243 228 35 0 chr9 136518195 136518252 -5753192 - MIR SINE MIR -61 147 89 213 290 11 32 chr9 136518537 136518630 -5752814 + MIR SINE MIR 55 145 -63 667 350 49 22 chr9 136518665 136519031 -5752413 + MLT1K LTR MaLR 33 408 -180 911 200 27 5 chr9 136519379 136519564 -5751880 - MER5A DNA MER1_type 0 189 1 279 258 0 22 chr9 136519706 136519795 -5751649 + C-rich Low_complexity Low_complexity 3 89 0 1302 146 177 8 chr9 136521472 136521726 -5749718 - AluJb SINE Alu -5 297 1 211 197 0 42 chr9 136521802 136521873 -5749571 + C-rich Low_complexity Low_complexity 1 68 0 606 301 16 32 chr9 136522516 136522577 -5748867 + L1MC5 LINE L1 7659 7719 -242 2227 232 41 9 chr9 136522577 136523116 -5748328 - MER89 LTR ERV1 0 559 4 606 301 16 32 chr9 136523116 136523303 -5748141 + L1MC5 LINE L1 7719 7903 -58 204 181 14 125 chr9 136523524 136523596 -5747848 + L2 LINE L2 3205 3268 -4 1899 168 0 3 chr9 136524534 136524843 -5746601 - AluSx SINE Alu -4 308 1 358 140 0 0 chr9 136525131 136525188 -5746256 - FRAM/FAM SINE Alu -111 55 1 379 290 7 35 chr9 136527190 136527335 -5744109 - MER5A DNA MER1_type -26 163 23 2299 80 23 0 chr9 136527754 136528056 -5743388 + AluSc SINE Alu 1 309 0 2068 122 0 0 chr9 136528130 136528425 -5743019 + AluSx SINE Alu 1 295 -17 317 206 48 56 chr9 136528600 136528726 -5742718 + L1MC4 LINE L1 7918 8042 0 250 322 23 0 chr9 136528756 136528843 -5742601 + L1ME LINE L1 5593 5681 -440 2094 88 0 4 chr9 136531125 136531398 -5740046 + AluSx SINE Alu 15 286 -26 221 87 0 43 chr9 136531398 136531444 -5740000 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 2338 96 0 0 chr9 136533178 136533490 -5737954 + AluSx SINE Alu 1 312 0 1783 160 16 16 chr9 136534267 136534579 -5736865 + AluJb SINE Alu 1 312 0 841 206 50 0 chr9 136534681 136534841 -5736603 - FAM SINE Alu -7 168 1 1446 122 0 14 chr9 136534852 136535013 -5736431 - AluSg/x SINE Alu -18 294 135 2258 90 0 6 chr9 136535013 136535325 -5736119 - AluY SINE Alu -1 310 1 1446 122 0 14 chr9 136535325 136535376 -5736068 - AluSg/x SINE Alu -177 135 85 279 148 0 89 chr9 136535719 136535820 -5735624 + (CTTTA)n Simple_repeat Simple_repeat 3 94 0 257 215 0 13 chr9 136537229 136537308 -5734136 + GA-rich Low_complexity Low_complexity 2 79 0 362 276 77 6 chr9 136537679 136537835 -5733609 + L2 LINE L2 2851 3017 -255 197 186 0 129 chr9 136537987 136538057 -5733387 + L2 LINE L2 3201 3261 -11 225 260 229 0 chr9 136538330 136538426 -5733018 + MIR SINE MIR 20 137 -71 827 242 29 51 chr9 136538676 136538949 -5732495 + L1MD2 LINE L1 6083 6349 -10 1548 155 0 26 chr9 136539027 136539291 -5732153 + AluJo SINE Alu 39 295 -17 188 368 0 0 chr9 136539742 136539829 -5731615 - MIR SINE MIR -70 138 52 292 338 54 7 chr9 136540009 136540157 -5731287 - MIR3 SINE MIR -19 189 35 187 198 12 0 chr9 136540840 136540890 -5730554 + MIR SINE MIR 109 161 -47 357 283 218 8 chr9 136541568 136541773 -5729671 + MIR SINE MIR 19 262 0 342 268 126 8 chr9 136541729 136541856 -5729588 - MIR SINE MIR -3 259 118 * 259 182 36 0 chr9 136541879 136541934 -5729510 + MIR SINE MIR 81 137 -71 436 290 42 26 chr9 136541939 136542132 -5729312 - MIR3 SINE MIR -10 198 3 936 213 37 52 chr9 136542796 136543033 -5728411 + MER96B DNA MER1_type? 3 237 -180 2419 56 0 7 chr9 136543033 136543336 -5728108 - AluY SINE Alu -10 301 1 936 213 37 52 chr9 136543336 136543366 -5728078 + MER96B DNA MER1_type? 237 266 -151 925 94 0 0 chr9 136543370 136543498 -5727946 + FLAM_C SINE Alu 15 142 -1 925 200 0 0 chr9 136543518 136543688 -5727756 + AluJb SINE Alu 120 289 -23 1108 186 0 0 chr9 136543697 136543880 -5727564 + AluSx SINE Alu 1 183 -129 1061 157 0 0 chr9 136543879 136544045 -5727399 - AluJb SINE Alu -17 295 130 * 447 169 36 0 chr9 136544046 136544129 -5727315 + MER96B DNA MER1_type? 332 417 0 670 165 16 8 chr9 136544673 136544794 -5726650 - AluJb SINE Alu -11 301 180 352 331 95 0 chr9 136545041 136545210 -5726234 + MIR3 SINE MIR 6 190 -18 372 234 0 0 chr9 136545713 136545807 -5725637 + (TG)n Simple_repeat Simple_repeat 2 95 0 186 195 52 78 chr9 136546336 136546413 -5725031 - MIR3 SINE MIR -47 161 87 445 318 15 8 chr9 136546485 136546617 -5724827 + MIR SINE MIR 6 138 -124 2387 84 3 0 chr9 136547045 136547354 -5724090 + AluSg SINE Alu 1 310 0 2066 125 3 0 chr9 136547443 136547747 -5723697 + AluSx SINE Alu 1 305 -7 285 216 21 140 chr9 136548797 136548971 -5722473 + MIR SINE MIR 73 230 -32 201 147 0 0 chr9 136548982 136549016 -5722428 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 2088 112 0 7 chr9 136549029 136549325 -5722119 - AluSx SINE Alu -18 294 1 435 38 0 0 chr9 136549347 136549400 -5722044 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 221 257 146 72 chr9 136550281 136550446 -5720998 + MER5B DNA MER1_type 1 188 -1 2279 67 0 10 chr9 136550988 136551285 -5720159 - AluY SINE Alu -17 294 1 2107 97 3 29 chr9 136551622 136551930 -5719514 - AluSx SINE Alu -12 300 1 2180 103 0 10 chr9 136552581 136552892 -5718552 + AluSx SINE Alu 5 312 0 198 0 0 0 chr9 136556909 136556931 -5714513 + (A)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr9 136558815 136558835 -5712609 + (CTG)n Simple_repeat Simple_repeat 3 22 0 180 0 0 0 chr9 136559828 136559848 -5711596 + (A)n Simple_repeat Simple_repeat 1 20 0 515 275 167 4 chr9 136559917 136560157 -5711287 + L1ME LINE L1 5510 5788 -333 788 295 70 30 chr9 136561054 136561136 -5710308 + MLT1L LTR MaLR 183 260 -355 2152 108 0 7 chr9 136561136 136561442 -5710002 - AluSc SINE Alu -5 304 1 788 295 70 30 chr9 136561442 136561728 -5709716 + MLT1L LTR MaLR 260 566 -49 491 228 122 8 chr9 136561734 136561857 -5709587 - FLAM_A SINE Alu -5 137 1 836 162 67 39 chr9 136563523 136563702 -5707742 - MER20 DNA MER1_type -31 188 5 1977 215 147 19 chr9 136564132 136564649 -5706795 + MER119 DNA MER1_type 1 583 0 531 284 79 28 chr9 136565314 136565529 -5705915 - MIR SINE MIR -3 259 34 2156 125 0 10 chr9 136568480 136568784 -5702660 + AluJb SINE Alu 1 301 -11 2239 84 0 0 chr9 136569704 136569978 -5701466 - AluSp SINE Alu -11 302 29 1876 156 0 0 chr9 136570021 136570304 -5701140 + AluJb SINE Alu 1 283 -29 5096 194 52 75 chr9 136570364 136570676 -5700768 - Charlie1a DNA MER1_type -1404 1357 1039 1600 171 28 3 chr9 136570676 136570962 -5700482 - AluJo SINE Alu -19 293 1 5096 194 52 75 chr9 136570962 136571118 -5700326 - Charlie1a DNA MER1_type -1722 1039 881 1985 123 17 20 chr9 136571118 136571418 -5700026 - AluSx SINE Alu -13 299 1 5096 194 52 75 chr9 136571418 136572233 -5699211 - Charlie1a DNA MER1_type -1880 881 105 2042 147 0 7 chr9 136572233 136572540 -5698904 + AluJb SINE Alu 1 305 -7 5096 194 52 75 chr9 136572540 136572642 -5698802 - Charlie1a DNA MER1_type -2656 105 2 270 0 0 0 chr9 136573842 136573872 -5697572 + (A)n Simple_repeat Simple_repeat 1 30 0 1837 152 26 13 chr9 136575149 136575451 -5695993 - AluJo SINE Alu -6 306 1 438 192 298 7 chr9 136575485 136575636 -5695808 - L1ME1 LINE L1 -13 6153 5959 1971 101 40 11 chr9 136575780 136576058 -5695386 + AluSc SINE Alu 21 306 -3 382 171 0 150 chr9 136576060 136576200 -5695244 - L1MEc LINE L1 -4421 1975 1857 189 0 0 0 chr9 136576352 136576373 -5695071 + (A)n Simple_repeat Simple_repeat 1 21 0 2185 103 0 3 chr9 136576403 136576725 -5694719 - AluSx SINE Alu 0 321 1 249 255 196 11 chr9 136576728 136576883 -5694561 + L1ME1 LINE L1 5582 5760 -361 355 190 423 0 chr9 136576933 136577070 -5694374 + L1ME1 LINE L1 5959 6153 -13 1622 166 19 39 chr9 136577102 136577409 -5694035 + AluSx SINE Alu 1 301 -11 1591 153 59 17 chr9 136577419 136577540 -5693904 + AluJb SINE Alu 1 116 -196 198 0 0 0 chr9 136577540 136577562 -5693882 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1591 153 59 17 chr9 136577562 136577728 -5693716 + AluJb SINE Alu 116 300 -12 650 176 0 0 chr9 136577738 136577846 -5693598 + FLAM_A SINE Alu 15 122 -20 1864 235 136 46 chr9 136578575 136578609 -5692835 - HAL1 LINE L1 0 2507 2477 539 249 53 0 chr9 136578609 136578778 -5692666 + MER104 DNA MER2_type 3 180 0 1864 235 136 46 chr9 136578778 136579853 -5691591 - HAL1 LINE L1 -30 2477 1195 2182 115 0 3 chr9 136579853 136580157 -5691287 - AluSx SINE Alu -9 303 1 1864 235 136 46 chr9 136580157 136580525 -5690919 - HAL1 LINE L1 -1312 1195 862 1501 290 67 41 chr9 136580586 136581275 -5690169 + HAL1 LINE L1 3 709 -1798 1594 183 136 0 chr9 136581496 136581797 -5689647 - MER7A DNA MER2_type 0 346 7 583 224 97 48 chr9 136581895 136582123 -5689321 + HAL1 LINE L1 1365 1603 -904 677 206 136 5 chr9 136582127 136582311 -5689133 + HAL1 LINE L1 1675 1882 -625 295 324 85 45 chr9 136582875 136583051 -5688393 + L1ME3A LINE L1 5961 6143 -27 643 247 112 77 chr9 136583071 136583500 -5687944 - HAL1 LINE L1 -1699 808 365 1372 164 1 7 chr9 136584003 136584251 -5687193 + L1MB8 LINE L1 5777 6020 -148 191 324 149 0 chr9 136584904 136584978 -5686466 + L2 LINE L2 3185 3269 -3 23 0 0 0 chr9 136586578 136586601 -5684843 + AT_rich Low_complexity Low_complexity 1 23 0 788 226 0 18 chr9 136588709 136588877 -5682567 + FRAM SINE Alu 1 165 -1 2078 95 39 7 chr9 136589213 136589498 -5681946 - AluSq SINE Alu -19 294 1 2308 99 0 13 chr9 136590048 136590352 -5681092 - AluSc SINE Alu -9 300 1 336 291 73 42 chr9 136590361 136590789 -5680655 - L1MC4a LINE L1 -4 6117 5677 308 214 133 0 chr9 136590897 136590995 -5680449 - L1MC4a LINE L1 -2339 5469 5359 262 239 53 128 chr9 136592241 136592484 -5678960 - MIR SINE MIR -37 225 1 204 40 0 0 chr9 136592507 136592532 -5678912 + (ATGTG)n Simple_repeat Simple_repeat 5 29 0 321 259 160 23 chr9 136592614 136592745 -5678699 - MER5A DNA MER1_type -1 188 40 * 397 203 133 56 chr9 136592636 136592779 -5678665 + MER5A DNA MER1_type 35 188 -1 2321 114 3 0 chr9 136592834 136593141 -5678303 + AluSx SINE Alu 1 308 -4 321 26 0 0 chr9 136594025 136594063 -5677381 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 546 246 201 65 chr9 136594761 136595384 -5676060 + L2 LINE L2 2361 3074 -239 2223 117 0 7 chr9 136595594 136595894 -5675550 - AluSx SINE Alu -14 298 1 323 235 189 59 chr9 136596999 136597152 -5674292 + MER5B DNA MER1_type 1 173 -5 261 286 137 31 chr9 136597248 136597409 -5674035 + MIR SINE MIR 70 247 -15 299 243 175 58 chr9 136597654 136597843 -5673601 - L3 LINE CR1 -10 1567 1357 510 293 9 42 chr9 136597895 136598110 -5673334 + MIR SINE MIR 23 230 -32 226 316 81 37 chr9 136598331 136598603 -5672841 + L2 LINE L2 2991 3274 -39 1763 173 19 7 chr9 136598638 136598945 -5672499 - AluJo SINE Alu -1 311 1 2265 103 3 0 chr9 136599690 136599980 -5671464 + AluSp SINE Alu 1 291 -22 1806 162 0 26 chr9 136600235 136600544 -5670900 - AluJb SINE Alu -11 301 1 638 208 189 0 chr9 136602328 136602487 -5668957 + MER5A DNA MER1_type 1 189 0 22 35 0 0 chr9 136602766 136602795 -5668649 + AT_rich Low_complexity Low_complexity 1 29 0 310 269 206 40 chr9 136603066 136603289 -5668155 + MIR SINE MIR 2 261 -1 216 249 51 0 chr9 136604417 136604488 -5666956 - MIR3 SINE MIR -54 154 78 192 143 0 0 chr9 136604790 136604825 -5666619 + MER5B DNA MER1_type 1 35 -143 579 285 16 32 chr9 136606026 136606275 -5665169 + MIR SINE MIR 18 262 0 328 293 113 0 chr9 136607922 136608055 -5663389 + MIR SINE MIR 96 243 -19 384 121 197 0 chr9 136608234 136608300 -5663144 + MADE1 DNA Mariner 2 80 0 201 349 0 0 chr9 136608323 136608409 -5663035 - L2 LINE L2 -337 2977 2892 254 235 7 56 chr9 136608533 136608669 -5662775 - MER91 DNA MER1_type -1 195 11 262 238 36 24 chr9 136608815 136608899 -5662545 + MIR SINE MIR 114 198 -64 497 296 88 41 chr9 136609828 136609890 -5661554 + MLT1K LTR MaLR 134 192 -396 2432 120 33 67 chr9 136609890 136610053 -5661391 - MER57B LTR ERV1 0 434 267 2269 115 3 0 chr9 136610053 136610357 -5661087 + AluSq SINE Alu 1 305 -8 2432 120 33 67 chr9 136610357 136610642 -5660802 - MER57B LTR ERV1 -167 267 1 497 296 88 41 chr9 136610642 136610998 -5660446 + MLT1K LTR MaLR 192 572 -16 281 319 43 29 chr9 136611551 136611689 -5659755 + LTR33 LTR ERVL 313 452 -69 535 93 10 10 chr9 136611789 136611886 -5659558 + (CA)n Simple_repeat Simple_repeat 1 97 0 1789 159 7 0 chr9 136612375 136612652 -5658792 + AluJo SINE Alu 17 295 -17 240 333 32 16 chr9 136612747 136612873 -5658571 + L2 LINE L2 2962 3089 -183 227 91 0 0 chr9 136613042 136613075 -5658369 + Alu SINE Alu 1 33 -270 954 61 0 0 chr9 136613082 136613196 -5658248 - AluSg/x SINE Alu -11 298 185 213 59 78 39 chr9 136613197 136613248 -5658196 + (CACTA)n Simple_repeat Simple_repeat 1 53 0 1671 166 53 7 chr9 136613343 136613529 -5657915 - AluJb SINE Alu 0 312 111 180 0 0 0 chr9 136613529 136613549 -5657895 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 1671 166 53 7 chr9 136613549 136613666 -5657778 - AluJb SINE Alu -201 111 1 903 258 67 15 chr9 136613744 136614012 -5657432 + LTR16B LTR ERVL 7 288 -176 240 171 43 57 chr9 136614166 136614236 -5657208 + LTR16B LTR ERVL 299 367 -97 1806 168 7 3 chr9 136614295 136614593 -5656851 - AluJo SINE Alu -13 299 1 830 289 53 14 chr9 136614608 136614828 -5656616 - L1M4 LINE L1 -1721 4425 4215 1645 212 33 0 chr9 136614828 136615130 -5656314 - AluJo SINE Alu 0 312 1 830 289 53 14 chr9 136615130 136615546 -5655898 - L1M4 LINE L1 -1931 4215 3722 2239 195 16 74 chr9 136615563 136615895 -5655549 - L1MCa LINE L1 -4106 2501 2151 2103 130 0 3 chr9 136615895 136616188 -5655256 + AluSx SINE Alu 1 292 -20 2169 103 36 10 chr9 136616190 136616491 -5654953 + AluSc SINE Alu 1 309 0 2239 195 16 74 chr9 136616491 136616647 -5654797 - L1MCa LINE L1 -4457 2150 1986 1659 142 0 73 chr9 136616647 136616817 -5654627 - AluJb SINE Alu -45 267 125 2132 157 0 0 chr9 136616817 136617129 -5654315 + AluSx SINE Alu 1 312 0 1659 142 0 73 chr9 136617129 136617246 -5654198 - AluJb SINE Alu -187 125 1 2312 99 0 3 chr9 136617248 136617541 -5653903 - AluSc SINE Alu -17 292 1 2239 195 16 74 chr9 136617541 136617800 -5653644 - L1MCa LINE L1 -4622 1985 1607 1756 184 3 25 chr9 136617800 136618116 -5653328 - AluJo SINE Alu -3 309 1 2239 195 16 74 chr9 136618116 136618208 -5653236 - L1MCa LINE L1 -5000 1607 1511 1465 190 146 6 chr9 136618274 136618315 -5653129 - MLT2D LTR ERVL 0 414 380 471 35 0 0 chr9 136618315 136618372 -5653072 + (TG)n Simple_repeat Simple_repeat 2 58 0 1465 190 146 6 chr9 136618372 136618693 -5652751 - MLT2D LTR ERVL -34 380 1 1359 217 132 59 chr9 136619198 136619732 -5651712 - MLT1F1 LTR MaLR 0 567 19 228 217 43 29 chr9 136619878 136619947 -5651497 - MIR SINE MIR 0 262 193 305 365 93 17 chr9 136619988 136620344 -5651100 - L2 LINE L2 0 3272 2890 285 263 263 0 chr9 136620400 136620556 -5650888 - MIR SINE MIR -3 259 63 223 279 75 41 chr9 136620648 136620795 -5650649 - L2 LINE L2 -609 2705 2554 2634 141 19 0 chr9 136620801 136621219 -5650225 - MSTA LTR MaLR 0 428 3 420 273 81 77 chr9 136621511 136621638 -5649806 + MIR SINE MIR 53 183 -79 2474 111 8 0 chr9 136621638 136622009 -5649435 + THE1C LTR MaLR 1 374 -1 420 273 81 77 chr9 136622009 136622090 -5649354 + MIR SINE MIR 183 262 0 1696 223 49 20 chr9 136622099 136622547 -5648897 - MLT1C LTR MaLR 0 467 7 1666 192 7 16 chr9 136623024 136623332 -5648112 - AluJo SINE Alu -7 305 1 524 310 122 17 chr9 136623572 136623768 -5647676 + L1ME LINE L1 4934 5171 -975 186 103 0 0 chr9 136623768 136623797 -5647647 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 524 310 122 17 chr9 136623797 136623887 -5647557 + L1ME LINE L1 5171 5250 -896 818 237 40 97 chr9 136623892 136624122 -5647322 + L1ME LINE L1 5260 5465 -2343 2522 74 0 0 chr9 136624122 136624421 -5647023 - AluY SINE Alu -12 299 1 818 237 40 97 chr9 136624421 136624540 -5646904 + L1ME LINE L1 5465 5589 -2219 243 0 0 0 chr9 136624598 136624625 -5646819 + (CA)n Simple_repeat Simple_repeat 2 28 0 2115 144 3 3 chr9 136624659 136624971 -5646473 - AluSx SINE Alu 0 312 1 2117 115 0 39 chr9 136625326 136625638 -5645806 + AluSx SINE Alu 6 305 -7 2088 129 0 3 chr9 136625733 136626020 -5645424 + AluSg SINE Alu 1 286 -24 222 37 0 0 chr9 136626020 136626047 -5645397 + (TTA)n Simple_repeat Simple_repeat 2 28 0 622 192 138 0 chr9 136626052 136626182 -5645262 - FRAM SINE Alu -28 148 1 273 293 0 22 chr9 136626182 136626263 -5645181 + L1ME LINE L1 5686 5768 -353 399 98 16 0 chr9 136626263 136626324 -5645120 + U7 snRNA snRNA 2 63 0 2309 110 3 3 chr9 136626488 136626798 -5644646 + AluSq SINE Alu 1 310 -3 665 168 8 0 chr9 136626808 136626939 -5644505 + L1PB4 LINE L1 6022 6153 -3 705 290 98 10 chr9 136626939 136626981 -5644463 + L1MC4 LINE L1 6541 6578 -1464 2504 128 31 31 chr9 136626981 136627264 -5644180 + MER65A LTR ERV1 1 286 -159 1474 108 61 0 chr9 136627264 136627477 -5643967 - AluSq SINE Alu -5 308 83 2504 128 31 31 chr9 136627477 136627638 -5643806 + MER65A LTR ERV1 285 445 0 705 290 98 10 chr9 136627638 136627930 -5643514 + L1MC4 LINE L1 6578 6984 -1058 1704 220 21 25 chr9 136627940 136628371 -5643073 + MLT1C LTR MaLR 6 434 -33 455 83 0 83 chr9 136628453 136628537 -5642907 + L1PA10 LINE L1 6091 6167 -1 1945 171 7 3 chr9 136628597 136628906 -5642538 + AluJo SINE Alu 1 310 -2 641 279 122 19 chr9 136629030 136629400 -5642044 + L1MC4a LINE L1 7020 7415 -393 270 156 109 0 chr9 136629404 136629468 -5641976 - MER65A LTR ERV1 -18 427 357 1388 218 111 17 chr9 136629478 136629840 -5641604 + MSTD LTR MaLR 1 396 0 532 298 37 57 chr9 136629840 136630246 -5641198 + L1MC5 LINE L1 7362 7759 -202 195 42 0 0 chr9 136630271 136630295 -5641149 + (TG)n Simple_repeat Simple_repeat 2 25 0 2299 104 3 3 chr9 136630304 136630601 -5640843 - AluSx SINE Alu -15 297 1 387 0 0 0 chr9 136630606 136630649 -5640795 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1709 163 10 28 chr9 136630651 136630939 -5640505 - AluJo SINE Alu -27 285 3 21 71 0 0 chr9 136630944 136630986 -5640458 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr9 136631106 136631141 -5640303 + AT_rich Low_complexity Low_complexity 1 35 0 199 184 0 41 chr9 136631226 136631275 -5640169 + MIR SINE MIR 101 147 -61 2605 178 12 40 chr9 136631310 136631547 -5639897 - L1MB3 LINE L1 -5 6178 5936 2391 82 0 7 chr9 136631547 136631850 -5639594 - AluSx SINE Alu -11 301 1 2605 178 12 40 chr9 136631850 136632185 -5639259 - L1MB3 LINE L1 -247 5936 5622 243 88 0 0 chr9 136632945 136632979 -5638465 + (CACG)n Simple_repeat Simple_repeat 1 34 0 671 135 10 0 chr9 136633578 136633682 -5637762 - FLAM_C SINE Alu -37 106 2 299 304 0 11 chr9 136634100 136634192 -5637252 + GA-rich Low_complexity Low_complexity 2 92 0 2279 120 0 0 chr9 136634211 136634510 -5636934 + AluSx SINE Alu 1 299 -13 1881 147 0 49 chr9 136634513 136634660 -5636784 + AluJo SINE Alu 1 127 -185 2343 106 0 0 chr9 136634660 136634961 -5636483 + AluSx SINE Alu 1 301 -11 1881 147 0 49 chr9 136634961 136635120 -5636324 + AluJo SINE Alu 127 292 -20 187 306 231 7 chr9 136636120 136636267 -5635177 - L2 LINE L2 -212 3060 2881 796 210 109 28 chr9 136636403 136636651 -5634793 + MLT1K LTR MaLR 159 426 -162 192 77 0 0 chr9 136636652 136636678 -5634766 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 496 304 13 79 chr9 136636692 136636836 -5634608 - L2 LINE L2 -33 3280 3128 2438 78 0 13 chr9 136636836 136637143 -5634301 + AluSx SINE Alu 1 303 -9 496 304 13 79 chr9 136637143 136637376 -5634068 - L2 LINE L2 -185 3128 2928 343 292 75 0 chr9 136637383 136637503 -5633941 + MLT1K LTR MaLR 428 556 -32 664 154 45 0 chr9 136637504 136637614 -5633830 + FLAM_A SINE Alu 2 116 -17 623 122 0 0 chr9 136639001 136639091 -5632353 + AluJo SINE Alu 2 91 -221 439 218 23 0 chr9 136639091 136639178 -5632266 - L1M3 LINE L1 -451 5720 5632 1367 146 10 0 chr9 136639262 136639488 -5631956 + AluJo SINE Alu 82 309 0 2188 117 3 7 chr9 136639488 136639778 -5631666 - AluSp SINE Alu -24 289 1 603 216 20 4 chr9 136640618 136640874 -5630570 + GA-rich Low_complexity Low_complexity 1 260 0 26 0 0 0 chr9 136640934 136640960 -5630484 + AT_rich Low_complexity Low_complexity 1 26 0 2156 102 61 0 chr9 136641766 136642060 -5629384 - AluSx SINE Alu 0 312 1 2810 150 22 24 chr9 136643020 136643417 -5628027 - L1MB3 LINE L1 -1 6182 5786 216 0 0 0 chr9 136643417 136643441 -5628003 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1942 123 18 4 chr9 136643441 136643718 -5627726 - AluSx SINE Alu -31 281 1 2810 150 22 24 chr9 136643718 136643872 -5627572 - L1MB3 LINE L1 -395 5788 5631 1440 166 0 0 chr9 136643958 136644175 -5627269 + AluJb SINE Alu 82 298 -14 2381 75 7 0 chr9 136644282 136644574 -5626870 - AluSx SINE Alu -18 294 1 287 344 0 0 chr9 136644732 136644822 -5626622 - MIR3 SINE MIR -12 196 107 2372 95 0 10 chr9 136645712 136646016 -5625428 - AluSg SINE Alu -9 301 1 199 237 17 34 chr9 136646152 136646211 -5625233 + MIR SINE MIR 89 146 -116 181 322 68 0 chr9 136646946 136647005 -5624439 - L3b LINE CR1 -11 1572 1510 281 296 104 9 chr9 136648251 136648366 -5623078 - MIR SINE MIR -115 147 22 861 239 25 10 chr9 136648598 136648799 -5622645 - MLT1C LTR MaLR -17 450 247 1057 179 72 36 chr9 136648805 136649084 -5622360 - MLT1C LTR MaLR -173 294 6 2058 120 0 4 chr9 136650359 136650656 -5620788 - AluSx SINE Alu 0 307 12 453 246 38 3 chr9 136651127 136651322 -5620122 - MIR SINE MIR -7 255 6 256 273 71 0 chr9 136651375 136651474 -5619970 - MIR SINE MIR -66 142 37 888 212 0 0 chr9 136652680 136653085 -5618359 + (TTCA)n Simple_repeat Simple_repeat 1 405 0 302 324 48 0 chr9 136653096 136653201 -5618243 - L2 LINE L2 -19 3253 3144 285 315 0 0 chr9 136653704 136653793 -5617651 + MIR3 SINE MIR 72 160 -48 201 328 0 0 chr9 136654217 136654278 -5617166 - L2 LINE L2 -7 3306 3246 1650 203 74 5 chr9 136654450 136654830 -5616614 - MLT1D LTR MaLR -1 504 99 503 165 46 28 chr9 136654831 136654940 -5616504 + MLT1D LTR MaLR 2 112 -393 399 200 0 30 chr9 136654945 136655044 -5616400 + MIR SINE MIR 69 163 -65 356 207 86 43 chr9 136655398 136655514 -5615930 - MIR SINE MIR -37 225 105 2141 101 22 4 chr9 136655539 136655839 -5615605 + AluSx SINE Alu 1 305 0 263 259 93 29 chr9 136656346 136656485 -5614959 + MER103 DNA DNA 8 155 -11 269 267 116 0 chr9 136656504 136656590 -5614854 - MIR SINE MIR -94 114 19 282 296 106 0 chr9 136656932 136657074 -5614370 - MIR3 SINE MIR -15 193 37 364 208 50 0 chr9 136657907 136658008 -5613436 - MIR SINE MIR -72 136 31 221 248 9 106 chr9 136659364 136659477 -5611967 + L2 LINE L2 2886 2987 -285 244 221 29 0 chr9 136659502 136659570 -5611874 + L1ME LINE L1 5592 5661 -460 809 167 23 0 chr9 136659576 136659708 -5611736 + AluJo SINE Alu 1 135 -177 2189 82 0 75 chr9 136659708 136660026 -5611418 + AluSg SINE Alu 1 294 -16 294 29 0 0 chr9 136660098 136660133 -5611311 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2073 112 29 0 chr9 136660438 136660574 -5610870 + AluSx SINE Alu 1 132 -180 2566 57 0 0 chr9 136660574 136660870 -5610574 + AluY SINE Alu 1 296 -15 2073 112 29 0 chr9 136660870 136661010 -5610434 + AluSx SINE Alu 132 285 -27 231 36 0 0 chr9 136661177 136661205 -5610239 + (CA)n Simple_repeat Simple_repeat 2 29 0 427 134 10 10 chr9 136661994 136662091 -5609353 + GA-rich Low_complexity Low_complexity 2 98 0 2306 120 0 3 chr9 136662872 136663181 -5608263 - AluSx SINE Alu 0 312 5 274 216 192 64 chr9 136663512 136663637 -5607807 - L2 LINE L2 -2 3311 3171 2121 117 3 16 chr9 136663661 136663796 -5607648 + AluSx SINE Alu 1 136 -176 2591 69 3 0 chr9 136663796 136664100 -5607344 + AluSp SINE Alu 1 305 -8 2121 117 3 16 chr9 136664100 136664272 -5607172 + AluSx SINE Alu 136 304 -8 198 235 167 10 chr9 136664368 136664470 -5606974 + MIR3 SINE MIR 11 128 -80 1893 153 29 16 chr9 136664470 136664504 -5606940 - AluJb SINE Alu 0 312 280 198 0 0 0 chr9 136664504 136664526 -5606918 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1893 153 29 16 chr9 136664526 136664799 -5606645 - AluJb SINE Alu -32 280 1 247 191 0 0 chr9 136664805 136664852 -5606592 - Alu SINE Alu -1 132 86 853 195 59 0 chr9 136664853 136665022 -5606422 - AluJo SINE Alu -92 220 42 180 300 46 39 chr9 136665032 136665162 -5606282 + L2 LINE L2 2920 3050 -222 202 345 109 18 chr9 136666219 136666384 -5605060 - L2 LINE L2 -181 3091 2912 189 320 104 24 chr9 136667607 136667732 -5603712 + MIR SINE MIR 49 183 -79 211 286 26 26 chr9 136668150 136668227 -5603217 + MIR3 SINE MIR 117 193 -15 2354 148 58 0 chr9 136668303 136668748 -5602696 + L1MB3 LINE L1 5698 6168 -15 216 274 164 40 chr9 136669024 136669250 -5602194 + L2 LINE L2 2873 3126 -146 1262 85 15 2 chr9 136669369 136669783 -5601661 + (TGGA)n Simple_repeat Simple_repeat 1 419 0 207 180 240 0 chr9 136670162 136670212 -5601232 - MIR SINE MIR -113 149 88 484 178 0 51 chr9 136670442 136670599 -5600845 + CT-rich Low_complexity Low_complexity 1 149 0 919 280 96 18 chr9 136671370 136671713 -5599731 + L1MC4a LINE L1 5535 5904 -1904 207 0 0 0 chr9 136671887 136671910 -5599534 + (TA)n Simple_repeat Simple_repeat 2 24 0 296 271 159 13 chr9 136671941 136672092 -5599352 + L1MC4a LINE L1 5988 6160 -1648 607 226 54 19 chr9 136672676 136672860 -5598584 + L1ME2 LINE L1 5981 6177 -1 1863 135 31 53 chr9 136672871 136673189 -5598255 + AluJb SINE Alu 2 312 0 1009 244 113 31 chr9 136673193 136673623 -5597821 + L1ME3 LINE L1 1903 2386 -3829 2207 124 20 0 chr9 136673623 136673929 -5597515 + AluSx SINE Alu 1 312 0 1009 244 113 31 chr9 136673929 136674245 -5597199 + L1ME3 LINE L1 2386 2675 -3540 767 232 20 5 chr9 136674282 136674480 -5596964 + L1ME3 LINE L1 2759 2959 -3256 2380 93 0 0 chr9 136674480 136674769 -5596675 + AluSg SINE Alu 5 293 -17 1050 178 0 0 chr9 136674772 136674935 -5596509 + AluJb SINE Alu 140 302 -10 200 83 0 28 chr9 136674939 136674961 -5596483 + (TAA)n Simple_repeat Simple_repeat 3 25 -12 2058 141 0 22 chr9 136674961 136675274 -5596170 + AluSx SINE Alu 1 306 -6 200 83 0 28 chr9 136675274 136675287 -5596157 + (TAA)n Simple_repeat Simple_repeat 25 37 0 1558 217 32 88 chr9 136675407 136675757 -5595687 + L1ME3 LINE L1 5088 5456 -777 2313 111 0 0 chr9 136675757 136676055 -5595389 + AluSx SINE Alu 1 298 -14 1581 184 0 11 chr9 136676056 136676323 -5595121 + AluJb SINE Alu 35 298 -14 1558 217 32 88 chr9 136676323 136676714 -5594730 + L1ME3 LINE L1 5455 5806 -427 1611 266 80 33 chr9 136676734 136677286 -5594158 - MLT1G1 LTR MaLR -17 578 1 773 169 20 14 chr9 136677316 136677464 -5593980 + MLT1A2 LTR MaLR 1 149 -216 442 167 11 11 chr9 136677465 136677581 -5593863 + AluY SINE Alu 203 311 0 914 214 39 29 chr9 136677587 136677793 -5593651 + MLT1A2 LTR MaLR 167 374 0 927 225 88 72 chr9 136677793 136678120 -5593324 + L1ME3 LINE L1 5832 6167 -64 2338 116 0 0 chr9 136678120 136678421 -5593023 + AluSx SINE Alu 1 301 -11 927 225 88 72 chr9 136678421 136678480 -5592964 + L1ME3 LINE L1 6167 6224 -7 436 299 35 77 chr9 136678489 136678890 -5592554 + L1MEc LINE L1 3399 3782 -2433 7782 122 23 45 chr9 136678919 136678967 -5592477 + Tigger1 DNA MER2_type 1 49 -2369 1900 106 110 7 chr9 136678967 136679240 -5592204 - AluSg SINE Alu -9 301 1 7782 122 23 45 chr9 136679240 136680072 -5591372 + Tigger1 DNA MER2_type 49 898 -1520 2377 91 3 0 chr9 136680072 136680370 -5591074 + AluSp SINE Alu 1 299 -14 7782 122 23 45 chr9 136680370 136680679 -5590765 + Tigger1 DNA MER2_type 898 1159 -1259 1708 150 44 10 chr9 136680679 136680973 -5590471 + AluJb SINE Alu 1 304 -8 7782 122 23 45 chr9 136680973 136681143 -5590301 + Tigger1 DNA MER2_type 1159 1331 -1087 230 118 0 0 chr9 136681144 136681178 -5590266 - L1MB3 LINE L1 -78 6105 6072 2401 83 3 0 chr9 136681184 136681474 -5589970 - AluSx SINE Alu -14 298 8 808 118 25 0 chr9 136681499 136681618 -5589826 - FLAM_C SINE Alu -11 122 1 2148 115 24 0 chr9 136681645 136681940 -5589504 + AluSx SINE Alu 2 303 -9 401 0 0 20 chr9 136683695 136683745 -5587699 + (TAA)n Simple_repeat Simple_repeat 2 50 0 315 62 42 0 chr9 136683745 136683793 -5587651 - L1M4 LINE L1 -578 5596 5547 1204 259 36 83 chr9 136683793 136684147 -5587297 - MER69 DNA AcHobo -1927 599 207 2331 108 0 6 chr9 136684147 136684461 -5586983 + AluSx SINE Alu 1 312 0 1204 259 36 83 chr9 136684461 136684659 -5586785 - MER69 DNA AcHobo -2319 207 1 22 0 0 0 chr9 136684667 136684689 -5586755 + AT_rich Low_complexity Low_complexity 1 22 0 2089 99 0 49 chr9 136685266 136685570 -5585874 - AluSx SINE Alu -21 291 3 307 324 53 24 chr9 136686138 136686308 -5585136 + L2 LINE L2 3091 3265 -7 1477 190 42 12 chr9 136686326 136686657 -5584787 - MLT1A1 LTR MaLR -1 364 24 2252 117 3 3 chr9 136686894 136687202 -5584242 + AluSg SINE Alu 1 308 -2 417 271 8 25 chr9 136687260 136687382 -5584062 - MLT1C LTR MaLR 0 467 348 7333 75 21 1 chr9 136687733 136688720 -5582724 + LTR13 LTR ERVK 1 1007 0 1289 214 121 17 chr9 136688938 136689293 -5582151 - MSTD LTR MaLR -4 392 1 2445 104 0 0 chr9 136689395 136689704 -5581740 - AluSx SINE Alu -3 309 1 598 326 13 66 chr9 136690000 136690304 -5581140 - L2 LINE L2 0 3272 2985 363 170 128 0 chr9 136690510 136690604 -5580840 + MER53 DNA DNA 1 106 -83 2365 109 0 0 chr9 136691235 136691539 -5579905 + AluSc SINE Alu 1 304 -5 1443 105 5 34 chr9 136691545 136691754 -5579690 + AluJo SINE Alu 91 293 -19 1662 132 4 16 chr9 136691811 136692069 -5579375 - AluJo SINE Alu -57 255 1 454 278 69 0 chr9 136692104 136692248 -5579196 + L2 LINE L2 2593 2746 -568 2297 82 7 0 chr9 136692251 136692542 -5578902 + AluSx SINE Alu 1 293 -19 727 102 41 75 chr9 136693740 136693887 -5577557 - LTR10B LTR ERV1 0 547 406 1611 81 4 25 chr9 136693888 136694123 -5577321 - AluSq SINE Alu 0 313 84 2443 145 135 8 chr9 136694134 136694617 -5576827 - LTR10A LTR ERV1 -62 547 4 676 89 0 0 chr9 136694691 136694781 -5576663 - AluSq SINE Alu -222 91 2 844 220 0 56 chr9 136694783 136695088 -5576356 - LTR10B LTR ERV1 -137 368 7 25860 213 12 19 chr9 136695097 136700393 -5571051 - HERVI LTR ERV1 -1 7784 2524 267 136 0 0 chr9 136700394 136700438 -5571006 + LTR10B LTR ERV1 436 479 -68 827 189 97 67 chr9 136700443 136700782 -5570662 - LTR10B LTR ERV1 -71 434 11 2482 62 0 20 chr9 136701005 136701311 -5570133 - AluSx SINE Alu -12 300 1 187 261 0 92 chr9 136701414 136701479 -5569965 - MIR SINE MIR -114 148 90 278 330 68 0 chr9 136701518 136701636 -5569808 - MIR SINE MIR -15 247 122 212 276 59 126 chr9 136701709 136701948 -5569496 + L2 LINE L2 3023 3245 -68 1798 168 3 3 chr9 136701949 136702240 -5569204 - AluJo SINE Alu -3 309 19 341 248 195 7 chr9 136702346 136702495 -5568949 - MIR SINE MIR -73 189 13 181 333 14 0 chr9 136702812 136702884 -5568560 - L2 LINE L2 -1 3312 3240 207 273 148 23 chr9 136703002 136703090 -5568354 - MIR SINE MIR -16 246 148 7723 61 11 1 chr9 136703332 136704329 -5567115 + LTR13 LTR ERVK 1 1007 0 430 268 58 54 chr9 136704897 136705121 -5566323 - MER102a DNA MER1_type 0 330 106 212 340 69 14 chr9 136705410 136705554 -5565890 + MIR SINE MIR 89 240 -22 330 125 0 18 chr9 136705859 136705915 -5565529 + MER5A DNA MER1_type 15 69 -120 250 136 0 0 chr9 136705968 136706012 -5565432 - MADE1 DNA Mariner -1 79 36 1360 97 0 11 chr9 136706554 136706730 -5564714 + AluSg/x SINE Alu 136 309 -1 194 336 65 19 chr9 136706731 136706838 -5564606 + MIR SINE MIR 143 254 -8 316 370 0 0 chr9 136708014 136708122 -5563322 + L2 LINE L2 3189 3296 -17 2167 128 0 10 chr9 136708188 136708492 -5562952 - AluSx SINE Alu -11 301 1 1913 174 3 16 chr9 136708599 136708915 -5562529 + AluJo SINE Alu 1 312 0 217 247 182 29 chr9 136709310 136709480 -5561964 - L2 LINE L2 -254 3059 2864 2481 84 0 0 chr9 136710080 136710377 -5561067 - AluSq SINE Alu -16 297 1 1798 182 0 14 chr9 136710398 136710695 -5560749 + AluJb SINE Alu 1 293 -19 1361 81 0 49 chr9 136710750 136710771 -5560673 + AluSp SINE Alu 121 141 -172 2332 82 10 10 chr9 136710771 136711075 -5560369 + AluY SINE Alu 1 304 -7 1361 81 0 49 chr9 136711075 136711238 -5560206 + AluSp SINE Alu 141 296 -17 311 278 11 0 chr9 136712113 136712203 -5559241 + L1MC5 LINE L1 7809 7899 -62 1029 184 73 8 chr9 136712329 136712563 -5558881 - L1MC1 LINE L1 -1 6332 6084 292 325 121 6 chr9 136712703 136712860 -5558584 + MIR SINE MIR 31 205 -57 234 361 45 30 chr9 136714317 136714450 -5556994 + L2 LINE L2 3138 3272 0 203 328 23 30 chr9 136714844 136714975 -5556469 + C-rich Low_complexity Low_complexity 2 131 0 2018 111 0 24 chr9 136715373 136715695 -5555749 - AluSx SINE Alu 0 315 1 543 305 48 27 chr9 136715776 136715858 -5555586 - MIR SINE MIR -17 245 166 1888 163 3 0 chr9 136715858 136716153 -5555291 + AluJb SINE Alu 1 296 -16 543 305 48 27 chr9 136716153 136716314 -5555130 - MIR SINE MIR -96 166 5 297 89 0 0 chr9 136720430 136720475 -5550969 + (GGA)n Simple_repeat Simple_repeat 1 45 0 204 111 0 0 chr9 136721137 136721173 -5550271 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 317 226 146 7 chr9 136721467 136721604 -5549840 - L1MC5 LINE L1 -495 7466 7311 1693 149 56 23 chr9 136721734 136722036 -5549408 - AluJb SINE Alu 0 312 1 882 267 58 63 chr9 136722052 136722671 -5548773 - L1MC5 LINE L1 -735 7226 6611 2083 130 13 0 chr9 136722705 136723005 -5548439 + AluJo SINE Alu 1 304 -8 982 145 52 12 chr9 136723008 136723180 -5548264 + L1MC1 LINE L1 6137 6315 -18 248 318 24 0 chr9 136723202 136723287 -5548157 + C-rich Low_complexity Low_complexity 1 87 0 938 184 11 37 chr9 136724762 136724867 -5546577 - MER53 DNA DNA -4 185 86 2295 104 0 0 chr9 136724867 136725176 -5546268 + AluSx SINE Alu 1 309 -3 938 184 11 37 chr9 136725176 136725260 -5546184 - MER53 DNA DNA -103 86 1 1536 185 0 33 chr9 136727985 136728128 -5543316 + AluJo SINE Alu 1 130 -182 2271 99 3 0 chr9 136728128 136728432 -5543012 + AluSp SINE Alu 1 305 -8 1536 185 0 33 chr9 136728432 136728590 -5542854 + AluJo SINE Alu 130 292 -20 1887 139 10 10 chr9 136729937 136730232 -5541212 - AluSc SINE Alu -14 295 1 195 42 0 0 chr9 136730395 136730419 -5541025 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 670 203 25 6 chr9 136730961 136731124 -5540320 + MER20 DNA MER1_type 33 198 -21 1893 153 0 0 chr9 136732248 136732568 -5538876 + AluSx SINE Alu 1 320 0 274 349 29 1 chr9 136733275 136733389 -5538055 + MIR SINE MIR 55 170 -38 21 89 0 0 chr9 136734022 136734078 -5537366 + GC_rich Low_complexity Low_complexity 1 56 0 629 306 55 59 chr9 136734451 136734791 -5536653 - L1MC4a LINE L1 -891 6917 6578 1853 130 42 3 chr9 136734791 136735076 -5536368 + AluSx SINE Alu 1 296 -16 629 306 55 59 chr9 136735076 136735241 -5536203 - L1MC4a LINE L1 -1230 6578 6414 2294 60 3 13 chr9 136735251 136735552 -5535892 + AluY SINE Alu 1 298 -13 36 40 0 0 chr9 136735598 136735648 -5535796 + AT_rich Low_complexity Low_complexity 1 50 0 1880 148 0 10 chr9 136735836 136736134 -5535310 - AluSq SINE Alu -13 300 6 199 325 48 0 chr9 136736284 136736367 -5535077 - MIR SINE MIR -125 137 51 2100 163 69 48 chr9 136736400 136736648 -5534796 + L1MC2 LINE L1 5136 5377 -956 619 219 0 8 chr9 136736648 136736767 -5534677 + FLAM_C SINE Alu 1 118 -15 2100 163 69 48 chr9 136736767 136737065 -5534379 + L1MC2 LINE L1 5377 5701 -632 4047 153 102 60 chr9 136737065 136737568 -5533876 + MER4D LTR ERV1 1 557 -346 2240 109 3 3 chr9 136737568 136737881 -5533563 + AluSp SINE Alu 1 313 0 4047 153 102 60 chr9 136737881 136738244 -5533200 + MER4D LTR ERV1 557 903 0 2100 163 69 48 chr9 136738244 136738362 -5533082 + L1MC2 LINE L1 5701 5815 -518 3104 65 69 2 chr9 136738362 136738827 -5532617 - LTR61 LTR ERV1 0 595 100 15963 198 26 14 chr9 136738843 136742086 -5529358 - HERV3 LTR ERV1 0 8426 5148 739 169 0 0 chr9 136742076 136742200 -5529244 - HERV3 LTR ERV1 -4602 3824 3701 * 1826 209 5 40 chr9 136742192 136742614 -5528830 - HERV3 LTR ERV1 -5950 2476 2070 863 166 73 29 chr9 136742658 136742863 -5528581 + LTR9 LTR ERV1 399 612 0 312 209 1 0 chr9 136742863 136742940 -5528504 + L1MC2 LINE L1 5980 6061 -276 940 154 41 55 chr9 136742940 136743160 -5528284 - LTR29 LTR ERV1 0 622 406 2007 129 10 0 chr9 136743162 136743457 -5527987 + AluJo SINE Alu 1 298 -14 739 161 68 21 chr9 136743460 136743652 -5527792 + L1MC1 LINE L1 6133 6333 0 199 219 12 12 chr9 136743659 136743741 -5527703 + CT-rich Low_complexity Low_complexity 2 83 0 929 189 11 37 chr9 136745298 136745403 -5526041 - MER53 DNA DNA -4 185 86 2257 110 0 0 chr9 136745403 136745712 -5525732 + AluSx SINE Alu 1 309 -3 929 189 11 37 chr9 136745712 136745796 -5525648 - MER53 DNA DNA -103 86 1 554 236 24 12 chr9 136746714 136746879 -5524565 + MER20 DNA MER1_type 32 198 -21 1860 142 3 3 chr9 136748013 136748339 -5523105 + AluSx SINE Alu 1 326 0 286 339 32 2 chr9 136749047 136749169 -5522275 + MIR SINE MIR 55 180 -28 379 272 94 78 chr9 136750598 136750778 -5520666 - MIR SINE MIR -66 196 14 1667 135 51 26 chr9 136751506 136751818 -5519626 + MSTC LTR MaLR 1 320 -108 903 170 27 131 chr9 136752049 136752271 -5519173 + MER51C LTR ERV1 341 518 -122 1857 101 84 7 chr9 136752271 136752558 -5518886 - AluSq SINE Alu -4 309 1 903 170 27 131 chr9 136752558 136752670 -5518774 + MER51C LTR ERV1 518 640 0 602 103 41 0 chr9 136752670 136752767 -5518677 + MSTC LTR MaLR 317 417 -11 1092 178 37 8 chr9 136754160 136754472 -5516972 - L1MB4 LINE L1 0 6180 5817 2198 112 3 7 chr9 136754472 136754776 -5516668 - AluSq SINE Alu -10 303 1 1092 178 37 8 chr9 136754776 136754807 -5516637 - L1MB4 LINE L1 -363 5817 5788 3370 244 91 41 chr9 136754842 136755309 -5516135 - L1M4c LINE L1 -2797 3847 3405 1990 121 0 11 chr9 136755309 136755589 -5515855 + AluSg SINE Alu 3 279 -31 3370 244 91 41 chr9 136755589 136755616 -5515828 - L1M4c LINE L1 -3239 3405 3381 617 148 30 10 chr9 136755616 136755717 -5515727 + U13 snRNA snRNA 1 103 -1 3370 244 91 41 chr9 136755717 136755849 -5515595 - L1M4c LINE L1 -3263 3381 3257 2193 106 3 0 chr9 136755849 136756141 -5515303 + AluSq SINE Alu 2 294 -19 3370 244 91 41 chr9 136756141 136756621 -5514823 - L1M4c LINE L1 -3387 3257 2802 2031 136 0 20 chr9 136756621 136756923 -5514521 + AluSx SINE Alu 1 296 -16 3370 244 91 41 chr9 136756923 136756935 -5514509 - L1M4c LINE L1 -3842 2802 2792 1659 137 89 0 chr9 136756935 136757205 -5514239 + AluSq SINE Alu 1 294 -19 3370 244 91 41 chr9 136757205 136757256 -5514188 - L1M4c LINE L1 -3852 2792 2745 1849 159 6 22 chr9 136757256 136757571 -5513873 - AluJb SINE Alu -2 310 1 3370 244 91 41 chr9 136757571 136758240 -5513204 - L1M4c LINE L1 -3899 2745 2111 2120 115 3 0 chr9 136758240 136758527 -5512917 - AluSx SINE Alu -24 288 1 3370 244 91 41 chr9 136758527 136759512 -5511932 - L1M4c LINE L1 -4533 2111 797 308 288 29 50 chr9 136759507 136759646 -5511798 - L1M4c LINE L1 -6217 429 294 * 2101 123 0 0 chr9 136759662 136759962 -5511482 - AluY SINE Alu -11 300 1 238 277 75 11 chr9 136761841 136761935 -5509509 + MIR SINE MIR 48 147 -115 321 265 96 12 chr9 136762115 136762198 -5509246 - L1MC4 LINE L1 -1339 6703 6614 250 296 61 43 chr9 136762200 136762315 -5509129 - MIR SINE MIR -59 203 87 208 316 61 0 chr9 136763564 136763662 -5507782 + L2 LINE L2 2490 2593 -721 225 315 56 0 chr9 136763735 136763824 -5507620 + L2 LINE L2 2753 2846 -468 499 276 38 23 chr9 136764757 136764958 -5506486 - MIR3 SINE MIR -36 172 22 2098 113 3 3 chr9 136767077 136767370 -5504074 + AluSx SINE Alu 6 298 -14 326 273 0 0 chr9 136767477 136767554 -5503890 - MIR SINE MIR -58 150 74 510 67 0 0 chr9 136768361 136768436 -5503008 + (CCCCAG)n Simple_repeat Simple_repeat 6 80 0 931 154 45 0 chr9 136768755 136768911 -5502533 - AluSq SINE Alu -14 299 137 251 337 112 11 chr9 136770249 136770427 -5501017 - MIR SINE MIR -35 227 32 387 310 6 17 chr9 136770754 136770928 -5500516 + (CTGGGG)n Simple_repeat Simple_repeat 4 175 0 192 100 33 0 chr9 136771605 136771635 -5499809 + L2 LINE L2 3183 3213 -100 180 111 0 0 chr9 136772056 136772083 -5499361 + (CCCCAG)n Simple_repeat Simple_repeat 3 29 0 420 243 14 56 chr9 136772259 136772403 -5499041 + L2 LINE L2 3176 3313 0 291 361 36 24 chr9 136772608 136772774 -5498670 - MIR SINE MIR -35 227 60 820 139 0 56 chr9 136773162 136773306 -5498138 + AluJb SINE Alu 1 136 -176 1728 166 49 0 chr9 136773318 136773602 -5497842 + AluJo SINE Alu 1 298 -14 230 221 3 81 chr9 136773689 136773797 -5497647 - MIR SINE MIR -28 180 80 1950 127 42 0 chr9 136773815 136774099 -5497345 - AluSx SINE Alu -16 296 1 309 280 24 64 chr9 136774982 136775107 -5496337 - MIR SINE MIR -109 153 34 201 247 89 96 chr9 136779234 136779380 -5492064 - MIR3 SINE MIR -47 161 17 229 291 58 0 chr9 136779402 136779488 -5491956 - MIR3 SINE MIR -52 156 66 377 294 108 31 chr9 136779697 136779891 -5491553 - MIR SINE MIR -32 230 22 428 319 14 0 chr9 136780932 136781070 -5490374 + MIR SINE MIR 47 186 -76 266 338 76 41 chr9 136781312 136781457 -5489987 + MIR SINE MIR 43 192 -70 57 0 0 0 chr9 136783679 136783736 -5487708 + GC_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr9 136783862 136783884 -5487560 + GC_rich Low_complexity Low_complexity 1 22 0 604 284 33 24 chr9 136784123 136784334 -5487110 + MIR SINE MIR 31 243 -19 285 156 0 0 chr9 136784921 136784966 -5486478 + MIR3 SINE MIR 115 159 -49 1859 128 21 0 chr9 136785235 136785516 -5485928 - AluSx SINE Alu -25 287 1 516 200 0 0 chr9 136786191 136786366 -5485078 + (CA)n Simple_repeat Simple_repeat 2 176 0 387 216 0 0 chr9 136786382 136786544 -5484900 + (CA)n Simple_repeat Simple_repeat 1 162 0 273 187 0 75 chr9 136786547 136786654 -5484790 + (CAGAGA)n Simple_repeat Simple_repeat 2 100 0 781 143 45 0 chr9 136786654 136786787 -5484657 + BC200 scRNA scRNA 1 139 -61 186 227 0 0 chr9 136786798 136786873 -5484571 + (CA)n Simple_repeat Simple_repeat 2 76 0 1150 249 133 25 chr9 136787127 136787690 -5483754 + L1MC5 LINE L1 7303 7926 -35 2303 93 0 7 chr9 136787705 136788005 -5483439 + AluSx SINE Alu 1 298 -14 753 262 79 0 chr9 136788596 136788825 -5482619 + Charlie8 DNA MER1_type 4 250 -2167 312 224 178 9 chr9 136790911 136791018 -5480426 + MIR SINE MIR 32 156 -106 2138 103 6 40 chr9 136792057 136792233 -5479211 - AluSx SINE Alu -2 310 148 2164 104 3 0 chr9 136792233 136792521 -5478923 - AluSg SINE Alu -21 289 1 2138 103 6 40 chr9 136792521 136792665 -5478779 - AluSx SINE Alu -164 148 1 290 274 9 57 chr9 136792952 136793058 -5478386 - MIR3 SINE MIR -26 182 82 285 250 15 0 chr9 136794048 136794116 -5477328 + MIR SINE MIR 81 149 -113 209 300 0 0 chr9 136794233 136794283 -5477161 + L2 LINE L2 3213 3262 -10 182 212 0 0 chr9 136794734 136794767 -5476677 + MIR SINE MIR 111 143 -65 2364 75 3 0 chr9 136794883 136795188 -5476256 - AluSg SINE Alu -4 306 1 427 302 87 13 chr9 136796695 136796844 -5474600 - MIR SINE MIR -95 167 8 294 310 129 26 chr9 136797095 136797211 -5474233 - MIR SINE MIR -122 140 13 381 359 56 39 chr9 136797853 136798087 -5473357 + MIR SINE MIR 13 250 -12 198 270 122 0 chr9 136798106 136798180 -5473264 - MER5C DNA MER1_type -17 307 225 232 283 101 0 chr9 136798189 136798288 -5473156 - MER5C DNA MER1_type -200 124 16 263 292 199 31 chr9 136798334 136798560 -5472884 - L2 LINE L2 -19 3294 3031 2057 111 0 36 chr9 136798606 136798747 -5472697 + AluSx SINE Alu 1 146 -166 2289 69 10 0 chr9 136798747 136799038 -5472406 + AluSg SINE Alu 4 297 -13 2057 111 0 36 chr9 136799038 136799203 -5472241 + AluSx SINE Alu 146 296 -16 2221 92 7 0 chr9 136799203 136799495 -5471949 + AluSx SINE Alu 1 294 -18 347 269 115 10 chr9 136799545 136799649 -5471795 + L2 LINE L2 3156 3270 -2 202 292 31 0 chr9 136800793 136800858 -5470586 - MIR SINE MIR -83 179 113 2065 107 38 0 chr9 136800896 136801186 -5470258 - AluSx SINE Alu -11 301 1 202 326 20 31 chr9 136801861 136801959 -5469485 + MIR3 SINE MIR 83 179 -29 207 0 0 0 chr9 136802368 136802391 -5469053 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 374 279 91 1 chr9 136803271 136803403 -5468041 - MIR SINE MIR -58 150 34 226 315 45 0 chr9 136803766 136803855 -5467589 - MIR SINE MIR -141 121 29 297 269 92 8 chr9 136804043 136804162 -5467282 - MIR3 SINE MIR -71 137 9 347 283 113 0 chr9 136805195 136805301 -5466143 + MIR SINE MIR 67 184 -78 223 329 14 0 chr9 136805433 136805506 -5465938 - MIR3 SINE MIR -132 76 3 1486 128 72 11 chr9 136805726 136806079 -5465365 + AluJb SINE Alu 2 370 0 1615 214 97 23 chr9 136807032 136807463 -5463981 + MLT1C LTR MaLR 1 463 -4 356 368 7 21 chr9 136807951 136808095 -5463349 + MIR SINE MIR 67 208 -54 306 292 0 22 chr9 136808135 136808224 -5463220 + MLT1B LTR MaLR 245 331 -59 266 257 54 0 chr9 136808270 136808344 -5463100 + MIR3 SINE MIR 77 154 -54 1972 119 0 14 chr9 136808426 136808744 -5462700 - AluSx SINE Alu 0 314 1 1051 290 95 34 chr9 136808793 136809331 -5462113 + MLT1E LTR MaLR 6 576 -17 267 282 85 79 chr9 136809349 136809679 -5461765 + L2 LINE L2 2845 3176 -96 207 318 15 0 chr9 136810420 136810486 -5460958 - MIR3 SINE MIR -24 184 118 218 288 15 0 chr9 136810793 136810859 -5460585 + (TG)n Simple_repeat Simple_repeat 1 67 0 194 301 44 35 chr9 136810975 136811088 -5460356 + MIR3 SINE MIR 42 155 -53 33 109 0 0 chr9 136811428 136811566 -5459878 + GC_rich Low_complexity Low_complexity 1 138 0 2217 86 3 0 chr9 136812240 136812531 -5458913 - AluSq SINE Alu -16 297 6 1959 111 0 21 chr9 136812531 136812819 -5458625 - AluSq SINE Alu -31 282 1 2247 116 0 0 chr9 136812824 136813134 -5458310 - AluSg SINE Alu 0 310 1 812 120 0 70 chr9 136813134 136813276 -5458168 - AluJo/FLAM SINE Alu -180 132 1 295 234 135 27 chr9 136813709 136813820 -5457624 + MIR SINE MIR 23 145 -63 2265 94 10 0 chr9 136814882 136815190 -5456254 + AluSq SINE Alu 1 311 -2 233 303 53 15 chr9 136816577 136816709 -5454735 + MIR SINE MIR 48 184 -78 189 275 283 17 chr9 136816746 136816866 -5454578 - MIR SINE MIR -10 252 101 503 240 82 48 chr9 136817610 136817818 -5453626 + MIR SINE MIR 46 260 -2 263 273 154 7 chr9 136817853 136817996 -5453448 - MIR SINE MIR -19 243 80 341 219 62 39 chr9 136818461 136818589 -5452855 - MIR SINE MIR -117 145 15 2322 83 0 0 chr9 136818632 136818932 -5452512 + AluSg SINE Alu 1 300 -10 707 182 0 8 chr9 136819009 136819130 -5452314 - AluJo SINE Alu -111 201 82 692 237 129 42 chr9 136819130 136819264 -5452180 + MLT2C1 LTR ERVL 81 202 -195 1912 141 0 13 chr9 136819264 136819563 -5451881 + AluJo SINE Alu 11 305 -7 692 237 129 42 chr9 136819563 136819715 -5451729 + MLT2C1 LTR ERVL 202 392 -5 247 330 87 9 chr9 136819720 136819835 -5451609 + MIR SINE MIR 124 247 -15 467 289 28 0 chr9 136819936 136820078 -5451366 + MIR SINE MIR 28 173 -89 2237 85 0 0 chr9 136820117 136820410 -5451034 + AluSc SINE Alu 1 293 -16 1700 178 3 19 chr9 136820521 136820836 -5450608 - AluJb SINE Alu -2 310 1 1637 178 17 0 chr9 136820911 136821203 -5450241 - L1MB3 LINE L1 -1 6182 5886 1985 139 0 13 chr9 136821210 136821513 -5449931 - AluSx SINE Alu -13 299 1 1512 157 29 21 chr9 136821769 136822049 -5449395 + AluJo SINE Alu 1 282 -30 26 0 0 0 chr9 136822234 136822260 -5449184 + AT_rich Low_complexity Low_complexity 1 26 0 1527 147 55 15 chr9 136822260 136822568 -5448876 + AluSx SINE Alu 1 319 0 2050 119 0 0 chr9 136822991 136823284 -5448160 + AluSx SINE Alu 9 301 -11 202 250 31 0 chr9 136824140 136824204 -5447240 - L2 LINE L2 -323 2990 2925 259 286 0 127 chr9 136824386 136824575 -5446869 + G-rich Low_complexity Low_complexity 4 168 0 1894 132 24 0 chr9 136824802 136825090 -5446354 - AluSp SINE Alu -18 295 1 221 122 49 0 chr9 136827727 136827768 -5443676 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 714 152 0 0 chr9 136827807 136827912 -5443532 + FLAM_C SINE Alu 2 106 -37 347 154 31 0 chr9 136827982 136828047 -5443397 - Alu SINE Alu 0 301 235 1911 77 49 45 chr9 136828047 136828334 -5443110 - AluSx SINE Alu -24 288 1 227 281 141 25 chr9 136828419 136828540 -5442904 + L2 LINE L2 3138 3272 0 324 247 101 0 chr9 136828549 136828638 -5442806 + MIR SINE MIR 107 204 -58 306 308 96 0 chr9 136828633 136828737 -5442707 - L2 LINE L2 0 3272 3159 * 209 150 25 0 chr9 136828997 136829037 -5442407 + MIR SINE MIR 105 145 -63 195 42 0 0 chr9 136830608 136830632 -5440812 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 369 0 0 0 chr9 136830631 136830672 -5440772 + (TC)n Simple_repeat Simple_repeat 1 41 0 454 152 68 54 chr9 136830677 136830863 -5440581 - MER21A LTR ERV1 -27 904 677 640 130 22 0 chr9 136830864 136830985 -5440459 + AluSg/x SINE Alu 189 311 0 2000 167 48 35 chr9 136830985 136831357 -5440087 - MER21A LTR ERV1 -244 687 311 1289 124 48 172 chr9 136831517 136831872 -5439572 - MER21A LTR ERV1 -620 311 1 2208 84 3 32 chr9 136832190 136832500 -5438944 + AluSg SINE Alu 1 301 -9 1903 132 24 0 chr9 136832514 136832801 -5438643 + AluJb SINE Alu 4 297 -15 2199 92 3 13 chr9 136832870 136833175 -5438269 - AluSq SINE Alu -11 302 1 196 341 0 62 chr9 136833857 136833986 -5437458 + MIR SINE MIR 27 147 -115 266 321 130 6 chr9 136834160 136834322 -5437122 + LTR16C LTR ERVL 304 485 -6 285 312 78 7 chr9 136834333 136834474 -5436970 + MIR SINE MIR 70 220 -42 1928 124 3 0 chr9 136834870 136835153 -5436291 - AluSx SINE Alu -28 284 1 1765 159 16 26 chr9 136835175 136835483 -5435961 + AluJb SINE Alu 1 305 -7 226 231 183 10 chr9 136835651 136835755 -5435689 + L2 LINE L2 3151 3272 0 2607 122 16 26 chr9 136835792 136836220 -5435224 - MER57B LTR ERV1 -10 424 1 538 171 20 49 chr9 136836220 136836376 -5435068 - MER89-int LTR ERV1 0 7537 6996 * 648 345 29 4 chr9 136836372 136836618 -5434826 - MER89-int LTR ERV1 -483 7054 6803 2212 98 3 0 chr9 136837139 136837434 -5434010 - AluSx SINE Alu -16 296 1 2251 87 0 17 chr9 136838108 136838407 -5433037 - AluSq SINE Alu -19 294 1 841 234 5 5 chr9 136838730 136838914 -5432530 - MER89-int LTR ERV1 -1333 6204 6021 2310 64 0 7 chr9 136838915 136839211 -5432233 - AluY SINE Alu -17 294 1 1996 229 12 35 chr9 136839249 136839756 -5431688 - MER89-int LTR ERV1 -1775 5762 5268 902 356 45 44 chr9 136839763 136841160 -5430284 - MER89-int LTR ERV1 -2858 3943 2549 1947 113 3 17 chr9 136841160 136841452 -5429992 - AluSq SINE Alu -15 298 11 902 356 45 44 chr9 136841452 136841760 -5429684 - MER89-int LTR ERV1 -4252 2549 125 2119 114 0 0 chr9 136842542 136842841 -5428603 + AluSx SINE Alu 1 299 -13 344 369 39 47 chr9 136843155 136843515 -5427929 - MER89-int LTR ERV1 -5208 1593 1237 2293 96 3 0 chr9 136843635 136843937 -5427507 - AluSx SINE Alu -9 303 1 1558 174 45 0 chr9 136844930 136845195 -5426249 + AluJb SINE Alu 4 280 -32 222 37 0 0 chr9 136845198 136845225 -5426219 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1552 240 34 16 chr9 136845235 136845740 -5425704 + L1M3 LINE L1 3101 3614 -2532 1541 237 38 36 chr9 136845724 136846081 -5425363 + L1M3 LINE L1 3840 4201 -1945 * 2266 75 0 0 chr9 136846081 136846387 -5425057 - AluSg SINE Alu 0 306 1 1541 237 38 36 chr9 136846387 136846504 -5424940 + L1M3 LINE L1 4201 4316 -1830 * 2116 216 23 33 chr9 136846490 136846746 -5424698 + L1M3 LINE L1 4781 5038 -1142 1581 132 4 44 chr9 136846746 136847018 -5424426 + AluSx SINE Alu 1 261 -51 2116 216 23 33 chr9 136847018 136847432 -5424012 + L1M3 LINE L1 5038 5443 -737 1280 109 0 0 chr9 136847770 136847945 -5423499 + AluSg/x SINE Alu 136 310 0 203 336 65 19 chr9 136847946 136848053 -5423391 + MIR SINE MIR 143 254 -8 331 370 0 0 chr9 136849229 136849337 -5422107 + L2 LINE L2 3189 3296 -17 2039 128 0 10 chr9 136849403 136849707 -5421737 - AluSx SINE Alu -11 301 1 1806 171 3 16 chr9 136849814 136850130 -5421314 + AluJo SINE Alu 1 312 0 244 247 182 29 chr9 136850525 136850695 -5420749 - L2 LINE L2 -254 3059 2864 2338 90 0 0 chr9 136851291 136851592 -5419852 - AluSq SINE Alu -12 301 1 1682 182 0 14 chr9 136851613 136851910 -5419534 + AluJb SINE Alu 1 293 -19 2181 86 10 10 chr9 136851986 136852290 -5419154 + AluY SINE Alu 1 304 -7 1380 131 3 122 chr9 136852292 136852635 -5418809 + AluSc SINE Alu 1 302 -7 216 226 167 10 chr9 136852731 136852833 -5418611 + MIR3 SINE MIR 11 128 -80 1772 153 29 16 chr9 136852833 136852867 -5418577 - AluJb SINE Alu 0 312 280 198 0 0 0 chr9 136852867 136852889 -5418555 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1772 153 29 16 chr9 136852889 136853162 -5418282 - AluJb SINE Alu -32 280 1 247 191 0 0 chr9 136853168 136853215 -5418229 - Alu SINE Alu -1 132 86 870 195 59 0 chr9 136853216 136853385 -5418059 - AluJo SINE Alu -92 220 42 193 321 29 15 chr9 136853388 136853525 -5417919 + L2 LINE L2 2913 3051 -262 743 61 0 0 chr9 136853936 136854035 -5417409 - LTR13 LTR ERVK -908 99 1 435 264 16 25 chr9 136854386 136854507 -5416937 + MLT1C LTR MaLR 348 467 0 2117 127 0 0 chr9 136854565 136854872 -5416572 - AluSg SINE Alu -3 307 1 1516 190 42 12 chr9 136855109 136855440 -5416004 + MLT1A1 LTR MaLR 24 364 -1 327 328 52 23 chr9 136855454 136855628 -5415816 - L2 LINE L2 -3 3269 3091 1967 103 0 43 chr9 136856199 136856499 -5414945 + AluSx SINE Alu 5 291 -21 22 0 0 0 chr9 136857076 136857098 -5414346 + AT_rich Low_complexity Low_complexity 1 22 0 1290 262 37 64 chr9 136857106 136857293 -5414151 + MER69 DNA AcHobo 1 192 -1034 2163 115 0 6 chr9 136857293 136857607 -5413837 - AluSx SINE Alu 0 312 1 1290 262 37 64 chr9 136857607 136857961 -5413483 + MER69 DNA AcHobo 192 599 -627 350 76 18 47 chr9 136857961 136858012 -5413432 + L1M4 LINE L1 5547 5590 -593 2018 115 24 0 chr9 136858012 136858307 -5413137 - AluSx SINE Alu -9 303 2 350 76 18 47 chr9 136858307 136858333 -5413111 + L1M4 LINE L1 5590 5615 -568 822 118 25 0 chr9 136858334 136858453 -5412991 + FLAM_C SINE Alu 1 122 -21 2253 86 3 0 chr9 136858478 136858769 -5412675 + AluSx SINE Alu 8 299 -13 231 118 0 0 chr9 136858775 136858809 -5412635 + L1MB3 LINE L1 6072 6105 -78 3837 90 6 53 chr9 136858810 136858980 -5412464 - Tigger1 DNA MER2_type -1087 1331 1155 1622 146 44 10 chr9 136858980 136859274 -5412170 - AluJb SINE Alu -8 304 1 3837 90 6 53 chr9 136859274 136859583 -5411861 - Tigger1 DNA MER2_type -1263 1155 885 2240 91 3 0 chr9 136859583 136859881 -5411563 - AluSp SINE Alu -14 299 1 3837 90 6 53 chr9 136859881 136860024 -5411420 - Tigger1 DNA MER2_type -1533 885 737 959 173 0 6 chr9 137060039 137060195 -5211249 - AluSx SINE Alu -157 155 1 239 222 0 0 chr9 137062032 137062077 -5209367 + (CA)n Simple_repeat Simple_repeat 2 46 0 572 301 155 37 chr9 137062389 137062947 -5208497 + L1MEd LINE L1 1167 1790 -1215 381 198 0 0 chr9 137062949 137063030 -5208414 + (CA)n Simple_repeat Simple_repeat 1 81 0 361 326 91 38 chr9 137063075 137063104 -5208340 + L1M4 LINE L1 4807 4833 -1313 896 26 0 26 chr9 137063104 137063217 -5208227 - L1PA3 LINE L1 0 6155 6046 361 326 91 38 chr9 137063217 137063451 -5207993 + L1M4 LINE L1 4833 5084 -1062 258 362 119 5 chr9 137064061 137064279 -5207165 + MER69 DNA AcHobo 378 620 -606 274 250 26 13 chr9 137064288 137064364 -5207080 + MER69 DNA AcHobo 575 651 -1875 623 287 88 16 chr9 137064695 137064985 -5206459 + MER69 DNA AcHobo 2134 2450 -76 2273 57 3 27 chr9 137064985 137065283 -5206161 - AluY SINE Alu -20 291 1 623 287 88 16 chr9 137065283 137065309 -5206135 + MER69 DNA AcHobo 2450 2473 -53 2081 94 0 4 chr9 137067141 137067417 -5204027 - AluSx SINE Alu -29 283 9 500 348 20 52 chr9 137067709 137067959 -5203485 - HAL1 LINE L1 -1106 1401 1160 500 154 88 0 chr9 137067962 137068053 -5203391 - HY3 scRNA scRNA -2 99 1 329 283 129 9 chr9 137068630 137068755 -5202689 + MIR SINE MIR 15 153 -62 1200 141 0 11 chr9 137069135 137069319 -5202125 - AluSq SINE Alu -11 302 121 306 268 14 0 chr9 137069332 137069403 -5202041 - L1MEc LINE L1 -5519 877 806 950 119 0 0 chr9 137069413 137069547 -5201897 - AluJb SINE Alu -178 134 1 1447 230 67 115 chr9 137069550 137069665 -5201779 - L1MEc LINE L1 -5574 822 703 5104 62 9 6 chr9 137069665 137070310 -5201134 - SVA Other Other 0 1386 740 1447 230 67 115 chr9 137070310 137071012 -5200432 - L1MEc LINE L1 -5693 703 44 793 188 0 0 chr9 137071204 137071332 -5200112 - AluSq SINE Alu -182 131 4 1907 151 3 0 chr9 137071345 137071662 -5199782 - AluSx SINE Alu 0 312 1 257 133 117 0 chr9 137071664 137071724 -5199720 - L1M LINE L1 -844 5330 5264 2186 211 38 88 chr9 137071729 137071888 -5199556 - L1M4 LINE L1 -3084 3298 3133 2044 147 0 0 chr9 137071888 137072200 -5199244 - AluSx SINE Alu 0 312 1 2186 211 38 88 chr9 137072200 137072468 -5198976 - L1M4 LINE L1 -3249 3133 2853 1692 184 3 3 chr9 137072468 137072762 -5198682 - AluJo SINE Alu -18 294 1 2186 211 38 88 chr9 137072762 137073253 -5198191 - L1M4 LINE L1 -3529 2853 2339 2054 102 41 0 chr9 137073253 137073546 -5197898 + AluSx SINE Alu 1 305 -7 1704 55 0 14 chr9 137073546 137073766 -5197678 + AluY SINE Alu 77 293 -18 2072 119 3 0 chr9 137073766 137074072 -5197372 + AluSq SINE Alu 1 307 0 2186 211 38 88 chr9 137074072 137074129 -5197315 - L1M4 LINE L1 -4041 2341 2283 2413 68 0 3 chr9 137074129 137074439 -5197005 - AluY SINE Alu -2 309 1 2186 211 38 88 chr9 137074439 137074533 -5196911 - L1M4 LINE L1 -4099 2283 2186 1080 113 44 0 chr9 137074533 137074693 -5196751 - L1PA8 LINE L1 -6 6166 6000 2186 211 38 88 chr9 137074693 137074970 -5196474 - L1M4 LINE L1 -4196 2186 2003 2078 151 0 0 chr9 137074971 137075282 -5196162 - AluSx SINE Alu -1 311 1 1917 141 0 13 chr9 137075345 137075644 -5195800 + AluJb SINE Alu 13 307 -5 471 343 114 41 chr9 137075644 137075833 -5195611 - L1M4 LINE L1 -1112 5034 4860 1734 116 12 0 chr9 137075833 137076084 -5195360 - AluSx SINE Alu -4 308 55 471 343 114 41 chr9 137076084 137076261 -5195183 - L1M4 LINE L1 -1286 4860 4641 586 229 71 12 chr9 137076834 137077004 -5194440 + MER5A DNA MER1_type 5 184 -5 462 287 44 33 chr9 137077290 137077471 -5193973 - MIR SINE MIR -11 251 69 1538 181 29 4 chr9 137078281 137078562 -5192882 - AluJo SINE Alu -24 288 1 246 348 43 55 chr9 137079173 137079337 -5192107 + MIR SINE MIR 66 227 -35 209 204 0 20 chr9 137079437 137079486 -5191958 - L2 LINE L2 -208 3064 3017 183 349 71 24 chr9 137080051 137080177 -5191267 - MIR SINE MIR -77 185 54 2009 109 0 20 chr9 137080181 137080483 -5190961 - AluSq SINE Alu -17 296 1 326 299 119 0 chr9 137081207 137081341 -5190103 + MER46C DNA MER2_type 1 150 -188 500 230 0 7 chr9 137082705 137082857 -5188587 + GA-rich Low_complexity Low_complexity 2 152 0 370 213 50 0 chr9 137084877 137085037 -5186407 + (CA)n Simple_repeat Simple_repeat 1 168 0 267 231 39 8 chr9 137085099 137085229 -5186215 + (CA)n Simple_repeat Simple_repeat 1 134 0 292 224 59 0 chr9 137085240 137085325 -5186119 + (CA)n Simple_repeat Simple_repeat 1 90 0 467 215 41 0 chr9 137085478 137085650 -5185794 + (CA)n Simple_repeat Simple_repeat 1 179 0 252 164 27 14 chr9 137085662 137085735 -5185709 + (CA)n Simple_repeat Simple_repeat 2 75 0 1052 68 0 0 chr9 137086881 137087013 -5184431 + AluY SINE Alu 1 132 -179 442 250 17 94 chr9 137087043 137087223 -5184221 + MER53 DNA DNA 24 189 0 196 333 28 0 chr9 137088159 137088231 -5183213 + MIR SINE MIR 78 151 -111 393 230 221 29 chr9 137088315 137088500 -5182944 + MIR SINE MIR 3 224 -38 2125 94 17 10 chr9 137088578 137088875 -5182569 - AluSg SINE Alu -11 299 1 192 319 53 26 chr9 137089661 137089774 -5181670 - L2 LINE L2 -21 3251 3136 242 351 72 9 chr9 137090512 137090623 -5180821 + L2 LINE L2 3155 3272 0 483 149 0 0 chr9 137092225 137092299 -5179145 + AluJo SINE Alu 63 136 -176 26 44 0 44 chr9 137092299 137092319 -5179125 + AT_rich Low_complexity Low_complexity 1 20 -23 2072 100 3 7 chr9 137092319 137092608 -5178836 + AluSq SINE Alu 1 288 -25 26 44 0 44 chr9 137092608 137092632 -5178812 + AT_rich Low_complexity Low_complexity 20 43 0 244 276 76 9 chr9 137092924 137093029 -5178415 - L1MEd LINE L1 -3500 2629 2518 2072 143 0 9 chr9 137093031 137093346 -5178098 + AluJo SINE Alu 1 312 0 847 246 160 7 chr9 137093366 137093659 -5177785 + L1M4 LINE L1 4890 5227 -919 442 289 152 64 chr9 137093829 137094006 -5177438 - L1MEd LINE L1 -4490 1639 1479 1803 161 0 17 chr9 137094006 137094304 -5177140 + AluJo SINE Alu 1 293 -19 442 289 152 64 chr9 137094304 137094478 -5176966 - L1MEd LINE L1 -4650 1479 1308 1142 317 71 35 chr9 137094492 137095676 -5175768 - L1MEd LINE L1 -4751 1380 268 398 308 67 29 chr9 137096090 137096298 -5175146 - L1MEd LINE L1 -5901 218 3 381 346 68 0 chr9 137096304 137096437 -5175007 - MIR SINE MIR -117 145 4 297 0 0 0 chr9 137096463 137096496 -5174948 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 219 216 136 23 chr9 137096497 137096585 -5174859 - MIR SINE MIR -12 250 153 1790 96 0 0 chr9 137096590 137096820 -5174624 + AluSc SINE Alu 1 230 -79 180 0 0 0 chr9 137096838 137096858 -5174586 + (A)n Simple_repeat Simple_repeat 1 20 0 1337 174 72 21 chr9 137096858 137097191 -5174253 - THE1C LTR MaLR -25 350 1 187 364 0 15 chr9 137097196 137097262 -5174182 - L2 LINE L2 -69 3244 3180 194 329 141 0 chr9 137097466 137097551 -5173893 - MIR SINE MIR -130 132 36 491 347 0 3 chr9 137098628 137099031 -5172413 + (CA)n Simple_repeat Simple_repeat 1 401 0 276 30 0 0 chr9 137099042 137099075 -5172369 + (CA)n Simple_repeat Simple_repeat 1 33 0 260 303 89 52 chr9 137099075 137099341 -5172103 + L2 LINE L2 2946 3221 -51 25 31 0 0 chr9 137099397 137099429 -5172015 + AT_rich Low_complexity Low_complexity 1 32 0 666 343 5 14 chr9 137099619 137099832 -5171612 - MIR SINE MIR -43 219 9 465 201 5 21 chr9 137101062 137101509 -5169935 + (CA)n Simple_repeat Simple_repeat 1 439 0 557 181 12 16 chr9 137101526 137101779 -5169665 + (CA)n Simple_repeat Simple_repeat 1 251 0 389 226 6 17 chr9 137101850 137102031 -5169413 + (CA)n Simple_repeat Simple_repeat 1 179 0 207 273 45 53 chr9 137103178 137103310 -5168134 + L2 LINE L2 2985 3115 -157 231 282 0 60 chr9 137103324 137103473 -5167971 + (CCCTG)n Simple_repeat Simple_repeat 4 143 0 181 268 56 42 chr9 137104509 137104580 -5166864 + MIR3 SINE MIR 84 155 -53 219 262 214 0 chr9 137105631 137105715 -5165729 - MIR SINE MIR -59 149 48 618 182 6 11 chr9 137106322 137106503 -5164941 + CT-rich Low_complexity Low_complexity 1 180 0 677 173 6 17 chr9 137106533 137106712 -5164732 + CT-rich Low_complexity Low_complexity 1 177 0 200 140 0 53 chr9 137106721 137106778 -5164666 + (TCC)n Simple_repeat Simple_repeat 3 56 0 215 274 63 63 chr9 137107425 137107520 -5163924 - MIR SINE MIR -151 111 17 332 237 8 0 chr9 137107675 137107806 -5163638 + (CA)n Simple_repeat Simple_repeat 2 133 0 2055 116 0 19 chr9 137108742 137109060 -5162384 - AluSx SINE Alu 0 312 1 2305 79 7 3 chr9 137110248 137110552 -5160892 - AluSp SINE Alu -8 305 1 260 354 21 9 chr9 137111082 137111226 -5160218 - MIR SINE MIR -62 146 37 187 273 146 0 chr9 137111989 137112044 -5159400 + MIR SINE MIR 86 148 -60 191 269 39 0 chr9 137112278 137112330 -5159114 - MIR SINE MIR -96 166 113 23 0 0 0 chr9 137113183 137113206 -5158238 + AT_rich Low_complexity Low_complexity 1 23 0 1085 83 0 0 chr9 137113206 137113339 -5158105 - AluSp SINE Alu -180 133 1 2211 236 75 8 chr9 137113375 137114006 -5157438 + MER39 LTR ERV1 1 673 -34 1285 127 31 26 chr9 137114007 137114235 -5157209 + LTR26 LTR ERV1 1 229 -374 1442 126 5 5 chr9 137114242 137114456 -5156988 - AluSq SINE Alu -12 301 88 1889 148 8 34 chr9 137114465 137114523 -5156921 + LTR26 LTR ERV1 235 293 -310 2219 116 0 0 chr9 137114523 137114824 -5156620 + AluSg SINE Alu 1 301 -9 1889 148 8 34 chr9 137114824 137115144 -5156300 + LTR26 LTR ERV1 293 603 0 2333 60 3 7 chr9 137115274 137115575 -5155869 + AluY SINE Alu 1 300 -11 765 234 69 71 chr9 137115632 137115832 -5155612 + L1ME1 LINE L1 5770 5969 -197 2206 60 0 23 chr9 137115832 137116131 -5155313 + AluY SINE Alu 1 292 -19 765 234 69 71 chr9 137116131 137116206 -5155238 + L1ME1 LINE L1 5969 6043 -123 2243 107 0 3 chr9 137116206 137116516 -5154928 + AluSx SINE Alu 1 309 -3 765 234 69 71 chr9 137116516 137116632 -5154812 + L1ME1 LINE L1 6043 6161 -5 1635 185 13 3 chr9 137116637 137116939 -5154505 - AluJo SINE Alu -7 305 1 2303 84 0 3 chr9 137116985 137117283 -5154161 + AluSg SINE Alu 1 297 -13 225 211 0 0 chr9 137117283 137117340 -5154104 + (TA)n Simple_repeat Simple_repeat 1 57 0 232 311 26 53 chr9 137118780 137118931 -5152513 - MIR3 SINE MIR -29 179 33 527 306 68 24 chr9 137119792 137119998 -5151446 - MIR SINE MIR 0 262 48 266 308 66 11 chr9 137121057 137121148 -5150296 - MIR SINE MIR -118 144 49 180 343 19 28 chr9 137121458 137121566 -5149878 + MIR SINE MIR 18 124 -84 317 263 51 59 chr9 137121852 137121970 -5149474 - L2 LINE L2 -200 3072 2956 655 173 47 40 chr9 137122919 137123069 -5148375 + FRAM SINE Alu 1 40 0 313 306 104 47 chr9 137123100 137123293 -5148151 + MIR SINE MIR 19 222 -40 1987 110 16 36 chr9 137126173 137126482 -5144962 + AluSq SINE Alu 1 303 -10 277 276 60 52 chr9 137126707 137126823 -5144621 + MIR3 SINE MIR 2 118 -90 372 77 0 0 chr9 137127471 137127523 -5143921 + (CA)n Simple_repeat Simple_repeat 1 52 0 235 326 77 0 chr9 137129319 137129500 -5141944 + MER117 DNA MER1_type 3 197 0 289 340 10 16 chr9 137131051 137131245 -5140199 + L1ME4a LINE L1 5559 5751 -370 318 256 32 72 chr9 137131250 137131375 -5140069 + L1ME4a LINE L1 5812 5931 -190 228 272 78 48 chr9 137134463 137134566 -5136878 - MIR SINE MIR -71 137 32 195 303 38 68 chr9 137134812 137134944 -5136500 + MIR SINE MIR 23 150 -58 375 45 45 0 chr9 137137350 137137416 -5134028 + (CCCCCG)n Simple_repeat Simple_repeat 4 72 0 207 100 0 0 chr9 137137611 137137641 -5133803 + (CGGGG)n Simple_repeat Simple_repeat 1 30 0 380 307 153 0 chr9 137138943 137139119 -5132325 - MIR SINE MIR 0 262 60 2186 100 0 0 chr9 137139306 137139597 -5131847 - AluSx SINE Alu -10 302 12 485 384 31 8 chr9 137140063 137140318 -5131126 + MIR SINE MIR 2 262 0 475 204 14 88 chr9 137141391 137141538 -5129906 + MIR SINE MIR 15 150 -112 327 312 116 6 chr9 137142672 137142871 -5128573 - MIR SINE MIR -33 229 10 181 292 46 15 chr9 137143965 137144030 -5127414 - MIR SINE MIR -193 69 3 185 315 56 34 chr9 137144064 137144153 -5127291 - L2 LINE L2 -28 3285 3195 1251 131 0 25 chr9 137144230 137144429 -5127015 - AluJ SINE Alu -1 311 118 573 111 12 0 chr9 137144429 137144510 -5126934 - AluSg/x SINE Alu -12 297 216 2027 80 0 8 chr9 137144510 137144773 -5126671 - AluY SINE Alu -50 261 1 885 39 0 0 chr9 137144773 137144875 -5126569 - AluJ SINE Alu -177 135 34 371 283 64 64 chr9 137144876 137145127 -5126317 - L2 LINE L2 -212 3101 2851 811 124 9 0 chr9 137145132 137145245 -5126199 + FLAM_A SINE Alu 11 124 -18 470 353 83 36 chr9 137145395 137145572 -5125872 + L1M4 LINE L1 4641 4808 -1338 1734 116 12 0 chr9 137145572 137145823 -5125621 + AluSx SINE Alu 55 308 -4 470 353 83 36 chr9 137145823 137146005 -5125439 + L1M4 LINE L1 4808 5017 -1129 1922 145 0 13 chr9 137146011 137146314 -5125130 - AluJb SINE Alu -4 308 10 1998 139 27 0 chr9 137146375 137146676 -5124768 + AluSq SINE Alu 1 309 -4 2063 104 0 49 chr9 137147156 137147344 -5124100 - AluSx SINE Alu -2 310 143 2183 106 13 0 chr9 137147344 137147647 -5123797 - AluSp SINE Alu -6 307 1 2063 104 0 49 chr9 137147647 137147784 -5123660 - AluSx SINE Alu -169 143 1 782 206 0 0 chr9 137147787 137147918 -5123526 - FLAM_A SINE Alu -2 131 1 405 312 33 23 chr9 137148480 137148695 -5122749 + L2 LINE L2 3077 3293 -20 635 251 133 10 chr9 137149431 137149626 -5121818 + MIR SINE MIR 44 262 0 2138 78 37 7 chr9 137149660 137149955 -5121489 + AluSg SINE Alu 1 304 -6 2021 118 0 25 chr9 137150051 137150366 -5121078 + AluSx SINE Alu 6 312 0 1322 187 90 24 chr9 137150379 137150668 -5120776 + AluJo SINE Alu 5 312 0 3809 179 22 22 chr9 137150752 137150796 -5120648 + L1MB3 LINE L1 5449 5492 -691 2076 134 7 0 chr9 137150796 137151102 -5120342 + AluSx SINE Alu 1 308 -4 3809 179 22 22 chr9 137151102 137151791 -5119653 + L1MB3 LINE L1 5491 6182 -1 1150 159 245 16 chr9 137153390 137153635 -5117809 + AluJo SINE Alu 2 302 0 621 190 95 17 chr9 137153752 137153931 -5117513 + MER117 DNA MER1_type 1 193 -4 349 241 46 19 chr9 137153935 137154043 -5117401 - MIR3 SINE MIR -48 160 50 182 329 27 0 chr9 137154182 137154255 -5117189 - MIR SINE MIR -115 147 73 218 325 6 30 chr9 137155037 137155176 -5116268 + MIR SINE MIR 100 233 -29 687 126 13 133 chr9 137155743 137155894 -5115550 + FLAM_C SINE Alu 1 133 0 210 384 12 0 chr9 137156499 137156585 -5114859 - MER5A DNA MER1_type -43 146 60 192 311 44 11 chr9 137156510 137156600 -5114844 + MER5A DNA MER1_type 66 158 -31 * 285 267 0 0 chr9 137157334 137157394 -5114050 + L2 LINE L2 3213 3272 0 518 324 109 7 chr9 137158179 137158472 -5112972 + MER77 LTR ERV1 277 599 -6 265 280 182 15 chr9 137158746 137158878 -5112566 + L3 LINE CR1 1402 1555 -22 1900 115 10 20 chr9 137159092 137159396 -5112048 - AluSx SINE Alu -11 301 1 207 213 66 0 chr9 137159815 137159876 -5111568 + L3 LINE CR1 1509 1573 -4 216 187 180 10 chr9 137159901 137160017 -5111427 - MIR SINE MIR -58 150 7 1971 130 3 7 chr9 137160478 137160770 -5110674 + AluSx SINE Alu 1 291 -21 362 285 35 0 chr9 137160771 137160900 -5110544 - MIR SINE MIR -27 235 103 241 211 19 0 chr9 137161330 137161382 -5110062 + MIR SINE MIR 113 165 -97 920 114 8 0 chr9 137161922 137162054 -5109390 + AluSq/x SINE Alu 1 133 -180 2371 236 26 68 chr9 137162079 137162208 -5109236 + L1MB5 LINE L1 5478 5611 -563 2313 83 0 13 chr9 137162208 137162522 -5108922 + AluY SINE Alu 2 311 0 2371 236 26 68 chr9 137162522 137162551 -5108893 + L1MB5 LINE L1 5611 5640 -534 2187 97 3 7 chr9 137162551 137162859 -5108585 + AluSx SINE Alu 1 307 -5 2371 236 26 68 chr9 137162859 137163425 -5108019 + L1MB5 LINE L1 5640 6173 -1 2145 92 13 10 chr9 137163439 137163742 -5107702 + AluY SINE Alu 1 304 -7 2260 109 0 3 chr9 137163915 137164228 -5107216 - AluSx SINE Alu 0 312 1 238 71 0 241 chr9 137165753 137165764 -5105680 - ORSL DNA AcHobo -71 204 192 2104 89 6 25 chr9 137165764 137166079 -5105365 - AluSp SINE Alu -4 309 1 238 71 0 241 chr9 137166079 137166107 -5105337 - ORSL DNA AcHobo -83 192 159 2025 100 0 35 chr9 137166107 137166426 -5105018 + AluY SINE Alu 1 308 -3 238 71 0 241 chr9 137166426 137166447 -5104997 - ORSL DNA AcHobo -116 159 178 2172 105 7 7 chr9 137166447 137166753 -5104691 + AluSx SINE Alu 1 306 -6 238 71 0 241 chr9 137166753 137166802 -5104642 - ORSL DNA AcHobo -96 179 120 1738 162 3 14 chr9 137166818 137167114 -5104330 + AluJo SINE Alu 9 301 -11 1875 106 103 0 chr9 137167117 137167399 -5104045 + AluY SINE Alu 1 311 0 452 157 22 11 chr9 137167447 137167536 -5103908 - ORSL DNA AcHobo -185 90 1 242 245 102 31 chr9 137167574 137167672 -5103772 + L2 LINE L2 2970 3074 -198 398 184 37 18 chr9 137167744 137167853 -5103591 - MER45A DNA AcHobo 0 178 68 204 301 21 54 chr9 137168472 137168658 -5102786 + (GGGTG)n Simple_repeat Simple_repeat 1 180 0 * 234 333 22 28 chr9 137168558 137168738 -5102706 + G-rich Low_complexity Low_complexity 2 180 0 242 299 6 51 chr9 137168778 137168955 -5102489 + G-rich Low_complexity Low_complexity 2 170 0 * 290 288 61 25 chr9 137168867 137169030 -5102414 + (CGGGG)n Simple_repeat Simple_repeat 3 171 0 21 0 0 0 chr9 137169384 137169405 -5102039 + GC_rich Low_complexity Low_complexity 1 21 0 206 62 31 0 chr9 137169514 137169546 -5101898 + (CGGGGG)n Simple_repeat Simple_repeat 4 36 0 2426 174 12 58 chr9 137170044 137170545 -5100899 + MER66A LTR ERV1 1 478 0 2296 96 3 0 chr9 137171022 137171323 -5100121 + AluSp SINE Alu 12 313 0 265 277 53 58 chr9 137171399 137171587 -5099857 + L1ME4a LINE L1 5934 6120 -1 276 304 168 21 chr9 137172223 137172414 -5099030 - MIR SINE MIR -36 226 8 1202 83 0 18 chr9 137172915 137173083 -5098361 - AluSq SINE Alu -148 165 1 321 344 12 6 chr9 137175044 137175064 -5096380 + GA-rich Low_complexity Low_complexity 2 20 -145 896 150 0 0 chr9 137175064 137175197 -5096247 + FLAM_C SINE Alu 1 133 0 321 344 12 6 chr9 137175197 137175339 -5096105 + GA-rich Low_complexity Low_complexity 20 165 0 197 200 0 113 chr9 137176438 137176518 -5094926 + L2 LINE L2 1606 1676 -1638 * 759 297 24 47 chr9 137176497 137176793 -5094651 - L2 LINE L2 0 3313 3025 215 297 99 64 chr9 137176817 137176851 -5094593 + L2 LINE L2 1648 1679 -1635 2200 114 0 0 chr9 137176851 137177158 -5094286 - AluSx SINE Alu -3 309 3 215 297 99 64 chr9 137177158 137177325 -5094119 + L2 LINE L2 1679 1856 -1458 1636 196 42 33 chr9 137177344 137177772 -5093672 + MER101 LTR ERV1 11 442 -32 2092 98 0 62 chr9 137177791 137177942 -5093502 + AluSx SINE Alu 1 123 -189 2233 87 3 3 chr9 137177942 137178240 -5093204 + AluSp SINE Alu 1 298 -15 2092 98 0 62 chr9 137178240 137178413 -5093031 + AluSx SINE Alu 123 305 -7 1007 295 106 41 chr9 137178444 137179000 -5092444 + L2 LINE L2 1913 2504 -810 1570 110 5 0 chr9 137179007 137179226 -5092218 + AluSx SINE Alu 1 220 -92 1925 157 75 34 chr9 137179244 137179685 -5091759 + LTR2B LTR ERV1 32 490 0 2050 91 0 23 chr9 137180833 137181142 -5090302 + AluSx SINE Alu 1 302 -10 436 298 181 23 chr9 137181252 137181467 -5089977 - MIR SINE MIR -10 252 4 307 73 164 0 chr9 137181597 137181652 -5089792 - AluJo/FRAM SINE Alu -65 237 174 803 149 0 0 chr9 137181652 137181773 -5089671 + AluJ SINE Alu 12 132 -180 1805 185 55 3 chr9 137181790 137182153 -5089291 + MSTB LTR MaLR 41 422 -4 524 174 0 0 chr9 137182153 137182239 -5089205 - FLAM_C SINE Alu -25 118 33 264 351 2 11 chr9 137183726 137183834 -5087610 + MIR SINE MIR 14 121 -87 814 191 30 12 chr9 137183920 137184088 -5087356 + AluJ SINE Alu 136 306 -6 255 278 157 61 chr9 137184256 137184486 -5086958 - L2 LINE L2 -50 3263 3012 433 279 82 11 chr9 137184559 137184749 -5086695 + L1ME4a LINE L1 1158 6121 0 2004 126 0 13 chr9 137184756 137185058 -5086386 + AluSx SINE Alu 1 298 -14 918 111 0 37 chr9 137186095 137186219 -5085225 + FLAM_A SINE Alu 1 121 -181 2225 101 3 0 chr9 137186219 137186516 -5084928 - AluSp SINE Alu -15 298 1 300 324 102 0 chr9 137186736 137186844 -5084600 - MER5C DNA MER1_type -169 155 37 2699 164 51 10 chr9 137187361 137188013 -5083431 + MER54B LTR ERVL 1 713 -80 1711 180 7 7 chr9 137188301 137188606 -5082838 + AluJo SINE Alu 1 305 -7 2047 88 0 4 chr9 137188905 137189177 -5082267 + AluSx SINE Alu 8 278 -34 450 0 0 0 chr9 137189184 137189234 -5082210 + (CA)n Simple_repeat Simple_repeat 1 50 0 1621 201 3 16 chr9 137189687 137189996 -5081448 - AluJb SINE Alu -7 305 1 2125 85 14 7 chr9 137196772 137197066 -5074378 + AluSg SINE Alu 1 296 -14 377 344 58 0 chr9 137197254 137197408 -5074036 - MIR3 SINE MIR -36 172 10 185 309 228 24 chr9 137198001 137198124 -5073320 - MIR SINE MIR -87 175 28 2149 102 0 13 chr9 137198319 137198622 -5072822 - AluSx SINE Alu -13 299 1 297 128 0 0 chr9 137198934 137198981 -5072463 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 2146 111 0 3 chr9 137199067 137199387 -5072057 + AluSx SINE Alu 1 312 0 1665 173 33 10 chr9 137199427 137199728 -5071716 - AluJo SINE Alu -4 308 1 326 305 76 0 chr9 137199789 137199907 -5071537 + L1ME LINE L1 5634 5760 -361 276 371 0 0 chr9 137200325 137200430 -5071014 - MIR SINE MIR -41 221 117 422 159 68 0 chr9 137201317 137201405 -5070039 + ORSL DNA AcHobo 24 117 -158 2052 119 0 25 chr9 137201437 137201756 -5069688 - AluSq SINE Alu -2 311 1 1912 122 3 25 chr9 137201760 137202079 -5069365 - AluJb SINE Alu 0 312 1 247 224 79 0 chr9 137202159 137202235 -5069209 + ORSL DNA AcHobo 168 249 -26 678 219 0 0 chr9 137204566 137204793 -5066651 + (CCCA)n Simple_repeat Simple_repeat 1 227 0 382 238 7 33 chr9 137204825 137204976 -5066468 + CT-rich Low_complexity Low_complexity 4 150 0 1140 124 0 0 chr9 137204995 137205030 -5066414 + (TCCA)n Simple_repeat Simple_repeat 1 213 0 1140 124 0 0 chr9 137205030 137205208 -5066236 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 2248 58 41 10 chr9 137205321 137205613 -5065831 + AluY SINE Alu 1 301 -10 5857 31 30 14 chr9 137205828 137206538 -5064906 - SVA Other Other -1 1385 665 450 0 0 0 chr9 137207437 137207487 -5063957 + (TG)n Simple_repeat Simple_repeat 2 51 0 818 148 8 0 chr9 137207496 137207624 -5063820 - FRAM SINE Alu -48 128 1 465 306 52 0 chr9 137208938 137209131 -5062313 + L1ME3 LINE L1 4996 5198 -948 2031 108 7 0 chr9 137209133 137209433 -5062011 + AluSx SINE Alu 1 302 0 980 274 214 20 chr9 137209433 137209980 -5061464 + L1ME3 LINE L1 5481 6133 -29 279 283 79 57 chr9 137210392 137210657 -5060787 + L2 LINE L2 2823 3093 -179 230 342 88 0 chr9 137211005 137211119 -5060325 + MIR SINE MIR 28 151 -111 413 329 44 36 chr9 137211321 137211461 -5059983 + MIR SINE MIR 15 159 -103 2202 95 3 3 chr9 137211461 137211757 -5059687 + AluSx SINE Alu 1 296 -16 413 329 44 36 chr9 137211757 137211841 -5059603 + MIR SINE MIR 159 241 -21 254 333 147 7 chr9 137212202 137212352 -5059092 + MIR SINE MIR 24 194 -68 738 148 23 16 chr9 137212971 137213099 -5058345 + FLAM_C SINE Alu 5 133 0 23 54 0 0 chr9 137213150 137213187 -5058257 + AT_rich Low_complexity Low_complexity 1 37 0 2045 128 0 10 chr9 137213225 137213523 -5057921 - AluSx SINE Alu -17 295 1 742 209 4 8 chr9 137213866 137214108 -5057336 + (CCA)n Simple_repeat Simple_repeat 1 240 0 262 136 0 23 chr9 137214108 137214152 -5057292 + (CAT)n Simple_repeat Simple_repeat 3 45 0 749 150 42 0 chr9 137214394 137214561 -5056883 + (CACCAT)n Simple_repeat Simple_repeat 1 174 0 241 270 59 95 chr9 137215211 137215253 -5056191 + L1ME LINE L1 5574 5616 -505 2328 80 3 0 chr9 137215253 137215552 -5055892 + AluSp SINE Alu 1 300 -13 2209 79 9 41 chr9 137215554 137215871 -5055573 + AluSp SINE Alu 1 307 -6 241 270 59 95 chr9 137215871 137215934 -5055510 + L1ME LINE L1 5617 5681 -440 274 0 73 0 chr9 137215934 137215975 -5055469 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 241 270 59 95 chr9 137215975 137216087 -5055357 + L1ME LINE L1 5681 5787 -334 2007 125 3 14 chr9 137216314 137216328 -5055116 - AluSx SINE Alu -19 293 280 198 0 0 0 chr9 137216328 137216350 -5055094 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2007 125 3 14 chr9 137216350 137216631 -5054813 - AluSx SINE Alu -32 280 1 2084 92 7 33 chr9 137216658 137216963 -5054481 + AluSx SINE Alu 1 297 -15 219 196 68 23 chr9 137217356 137217450 -5053994 + MIR SINE MIR 50 141 -67 276 318 219 10 chr9 137217463 137217655 -5053789 + MIR SINE MIR 23 254 -8 435 347 24 18 chr9 137218406 137218573 -5052871 - MIR SINE MIR -80 182 15 3557 108 52 2 chr9 137218819 137219320 -5052124 + MER1A DNA MER1_type 1 526 -1 2263 74 10 3 chr9 137219321 137219619 -5051825 - AluSp SINE Alu -13 300 1 30 0 0 0 chr9 137220843 137220873 -5050571 + GC_rich Low_complexity Low_complexity 1 30 0 183 42 0 0 chr9 137220984 137221008 -5050436 + (CGAG)n Simple_repeat Simple_repeat 2 25 0 2050 107 3 30 chr9 137222400 137222731 -5048713 - AluSp SINE Alu 0 323 1 2226 76 36 7 chr9 137223063 137223366 -5048078 - AluSq SINE Alu -1 312 1 1941 117 13 26 chr9 137223377 137223685 -5047759 - AluSx SINE Alu -8 304 1 205 353 27 76 chr9 137227512 137227696 -5043748 - MIR3 SINE MIR -23 185 11 220 305 67 9 chr9 137228843 137228948 -5042496 + MIR3 SINE MIR 49 159 -49 291 304 64 0 chr9 137228985 137229110 -5042334 + MER20 DNA MER1_type 83 215 -4 221 176 59 0 chr9 137229110 137229161 -5042283 + MIR3 SINE MIR 149 202 -6 1221 146 117 9 chr9 137231057 137231270 -5040174 + MER46A DNA MER2_type 1 236 0 1158 132 142 15 chr9 137231323 137231527 -5039917 - MER30 DNA MER1_type 0 230 1 274 386 39 0 chr9 137231584 137231711 -5039733 - MIR3 SINE MIR -28 180 49 2388 53 3 7 chr9 137232293 137232592 -5038852 - AluY SINE Alu -12 299 2 198 279 16 0 chr9 137237712 137237773 -5033671 + L2 LINE L2 761 822 -2492 260 304 118 0 chr9 137238265 137238367 -5033077 + L2 LINE L2 1839 1952 -1362 268 293 27 0 chr9 137239377 137239452 -5031992 - MER5B DNA MER1_type -97 81 5 316 134 36 45 chr9 137240160 137240272 -5031172 + C-rich Low_complexity Low_complexity 4 114 0 249 174 8 74 chr9 137240533 137240654 -5030790 + G-rich Low_complexity Low_complexity 6 118 0 199 274 170 15 chr9 137240922 137241057 -5030387 - MIR SINE MIR -60 202 47 26 0 0 0 chr9 137241170 137241196 -5030248 + AT_rich Low_complexity Low_complexity 1 26 0 2102 85 20 3 chr9 137241416 137241710 -5029734 - AluSp SINE Alu -14 299 1 191 278 56 42 chr9 137241854 137241926 -5029518 - L2 LINE L2 0 3272 3200 298 264 229 0 chr9 137242788 137242932 -5028512 + Charlie8 DNA MER1_type 28 204 -2213 234 275 83 58 chr9 137243735 137243855 -5027589 - MER5A DNA MER1_type -36 153 31 905 153 179 0 chr9 137245340 137245530 -5025914 + AluSg/x SINE Alu 66 289 -23 272 178 14 0 chr9 137249080 137249153 -5022291 + G-rich Low_complexity Low_complexity 3 76 0 2311 61 7 0 chr9 137249477 137249771 -5021673 - AluSx SINE Alu -14 298 3 217 308 246 8 chr9 137250634 137250764 -5020680 + MIR SINE MIR 73 233 -29 727 290 37 5 chr9 137250950 137251164 -5020280 - MIR SINE MIR -6 256 36 187 342 25 0 chr9 137251274 137251353 -5020091 + MIR SINE MIR 170 250 -12 326 248 80 32 chr9 137252505 137252630 -5018814 - MIR SINE MIR -70 192 62 220 316 40 0 chr9 137253481 137253557 -5017887 - L2 LINE L2 -35 3237 3159 200 291 70 0 chr9 137253567 137253653 -5017791 - MIR3 SINE MIR -6 202 111 180 0 0 0 chr9 137254438 137254458 -5016986 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 254 331 49 55 chr9 137256307 137256470 -5014974 - MIR SINE MIR -72 190 29 230 330 76 0 chr9 137256728 137256846 -5014598 + MIR3 SINE MIR 12 138 -70 525 312 161 11 chr9 137257024 137257303 -5014141 + L2 LINE L2 1621 1941 -1373 839 142 8 15 chr9 137258132 137258266 -5013178 + AluSq/x SINE Alu 2 134 -178 1709 127 45 21 chr9 137258267 137258403 -5013041 + AluSp SINE Alu 1 132 -181 2436 71 0 0 chr9 137258403 137258714 -5012730 + AluSp SINE Alu 1 311 -2 1709 127 45 21 chr9 137258714 137258868 -5012576 + AluSp SINE Alu 132 298 -15 604 231 100 73 chr9 137258870 137259130 -5012314 - L2 LINE L2 -728 2586 2320 529 143 0 22 chr9 137259184 137259275 -5012169 + HY4 scRNA scRNA 1 89 -4 1620 141 28 18 chr9 137259305 137259588 -5011856 - AluJb SINE Alu -26 286 1 2273 61 0 0 chr9 137259903 137260183 -5011261 + AluSx SINE Alu 1 280 -32 21 0 0 0 chr9 137260700 137260721 -5010723 + GC_rich Low_complexity Low_complexity 1 21 0 1474 69 0 51 chr9 137261103 137261319 -5010125 - AluY SINE Alu 0 311 107 1928 119 0 4 chr9 137261766 137262044 -5009400 + AluSc SINE Alu 16 292 -17 240 308 215 0 chr9 137262084 137262256 -5009188 - L1ME LINE L1 -297 5824 5616 230 256 102 51 chr9 137266148 137266285 -5005159 + L1M4 LINE L1 2676 2819 -3327 362 126 6 0 chr9 137266293 137266359 -5005085 - Alu SINE Alu -5 296 239 345 231 34 0 chr9 137266359 137266476 -5004968 + L1M4 LINE L1 2855 2975 -3171 1797 130 35 3 chr9 137266479 137266764 -5004680 + AluSx SINE Alu 1 294 -18 534 304 206 10 chr9 137266941 137267176 -5004268 + L1M4 LINE L1 3418 3606 -2540 8115 67 6 6 chr9 137267176 137268183 -5003261 + LTR13 LTR ERVK 1 1007 0 534 304 206 10 chr9 137268183 137268438 -5003006 + L1M4 LINE L1 3606 4004 -2142 181 350 94 8 chr9 137268799 137268916 -5002528 - L2 LINE L2 0 3272 3146 353 207 124 25 chr9 137268981 137269102 -5002342 + MER65A LTR ERV1 1 133 -312 1458 193 52 64 chr9 137269309 137269561 -5001883 - L1M4 LINE L1 -3126 3020 2766 1679 147 10 30 chr9 137269561 137269861 -5001583 + AluJo SINE Alu 5 298 -14 1458 193 52 64 chr9 137269861 137270037 -5001407 - L1M4 LINE L1 -3380 2766 2596 2296 91 10 0 chr9 137270037 137270345 -5001099 - AluSp SINE Alu 0 313 3 1458 193 52 64 chr9 137270345 137270381 -5001063 - L1M4 LINE L1 -3550 2596 2561 239 153 245 20 chr9 137270377 137270475 -5000969 + L1M4 LINE L1 5139 5258 -888 * 2079 104 3 0 chr9 137270475 137270762 -5000682 + AluSx SINE Alu 1 288 -24 180 0 0 0 chr9 137270765 137270785 -5000659 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1031 215 89 8 chr9 137270810 137271056 -5000388 - L1M4 LINE L1 -1200 4946 4681 2264 86 7 0 chr9 137271295 137271596 -4999848 - AluSx SINE Alu -9 303 1 1369 205 37 52 chr9 137271824 137272205 -4999239 - MLT1B LTR MaLR 0 390 16 1591 112 4 21 chr9 137272353 137272595 -4998849 - MER1B DNA MER1_type -9 330 133 205 250 24 24 chr9 137272686 137272770 -4998674 + (CTG)n Simple_repeat Simple_repeat 1 84 0 844 174 7 0 chr9 137273054 137273198 -4998246 - AluJb SINE Alu -11 301 157 980 204 0 0 chr9 137273727 137273894 -4997550 - FAM SINE Alu -8 167 1 1184 175 52 4 chr9 137273921 137274173 -4997271 - MER74A LTR ERVL -27 531 268 197 248 114 38 chr9 137274403 137274508 -4996936 - L2 LINE L2 -212 3060 2948 2240 97 6 3 chr9 137274510 137274821 -4996623 + AluSx SINE Alu 1 312 0 967 132 7 0 chr9 137274821 137274965 -4996479 + AluSg/x SINE Alu 131 275 -35 220 169 39 26 chr9 137274995 137275072 -4996372 + (TA)n Simple_repeat Simple_repeat 1 78 0 675 135 87 0 chr9 137275075 137275179 -4996265 - FLAM_C SINE Alu -28 115 3 2218 92 10 0 chr9 137275512 137275805 -4995639 - AluSx SINE Alu -16 296 1 333 281 26 53 chr9 137276634 137276721 -4994723 + L2 LINE L2 3162 3247 -25 2208 110 0 7 chr9 137276721 137277031 -4994413 - AluSq SINE Alu -5 308 1 333 281 26 53 chr9 137277031 137277057 -4994387 + L2 LINE L2 3247 3272 0 2204 118 0 0 chr9 137277167 137277473 -4993971 - AluSx SINE Alu -6 306 1 233 217 174 87 chr9 137277475 137277659 -4993785 - L1MEc LINE L1 -4221 2175 1976 1518 102 0 5 chr9 137277659 137277864 -4993580 + AluSg SINE Alu 1 204 -106 1048 155 0 0 chr9 137277880 137278035 -4993409 - AluSx SINE Alu -157 155 1 239 222 0 0 chr9 137279874 137279919 -4991525 + (CA)n Simple_repeat Simple_repeat 2 46 0 520 271 198 21 chr9 137280367 137280695 -4990749 + L1MEc LINE L1 704 1089 -5030 517 170 18 0 chr9 137280760 137280872 -4990572 + (CA)n Simple_repeat Simple_repeat 2 115 0 41286 32 23 2 chr9 137280946 137286970 -4984474 - L1PA3 LINE L1 0 6155 1 434 303 106 40 chr9 137286985 137287398 -4984046 + L1MEc LINE L1 1215 1634 -860 1996 123 3 0 chr9 137287694 137287994 -4983450 + AluSx SINE Alu 11 311 -1 321 329 94 12 chr9 137288028 137288198 -4983246 + L1MEc LINE L1 2357 2540 -3589 2312 97 6 0 chr9 137288223 137288534 -4982910 - AluSp SINE Alu 0 313 1 2053 94 11 0 chr9 137288889 137289164 -4982280 + AluSq SINE Alu 3 280 -33 267 79 0 0 chr9 137289164 137289202 -4982242 + (CA)n Simple_repeat Simple_repeat 1 38 0 279 292 42 17 chr9 137289214 137289450 -4981994 + L1MEc LINE L1 3060 3301 -2828 432 323 129 23 chr9 137289525 137289828 -4981616 + L1M4 LINE L1 4750 5084 -1062 304 362 119 5 chr9 137290438 137290656 -4980788 + MER69 DNA AcHobo 378 620 -606 300 241 48 12 chr9 137290665 137290748 -4980696 + MER69 DNA AcHobo 575 660 -1866 674 287 88 16 chr9 137291072 137291362 -4980082 + MER69 DNA AcHobo 2134 2450 -76 2251 57 3 27 chr9 137291362 137291660 -4979784 - AluY SINE Alu -20 291 1 674 287 88 16 chr9 137291660 137291686 -4979758 + MER69 DNA AcHobo 2450 2473 -53 2040 98 0 4 chr9 137293519 137293795 -4977649 - AluSx SINE Alu -29 283 9 441 328 24 56 chr9 137294087 137294337 -4977107 - HAL1 LINE L1 -1106 1401 1160 496 154 88 0 chr9 137294340 137294431 -4977013 - HY3 scRNA scRNA -2 99 1 310 283 129 9 chr9 137295008 137295133 -4976311 + MIR SINE MIR 15 153 -62 1251 128 0 17 chr9 137295517 137295697 -4975747 - AluSg/x SINE Alu -15 297 121 995 119 0 0 chr9 137295791 137295925 -4975519 - AluJb SINE Alu -178 134 1 1495 236 67 116 chr9 137295928 137296047 -4975397 - L1MEc LINE L1 -5574 822 699 5664 76 16 7 chr9 137296047 137296780 -4974664 - SVA Other Other 0 1386 647 1495 236 67 116 chr9 137296780 137297479 -4973965 - L1MEc LINE L1 -5697 699 44 787 195 0 0 chr9 137297671 137297799 -4973645 - AluSx SINE Alu -182 131 4 1925 161 3 0 chr9 137297812 137298129 -4973315 - AluSx SINE Alu 0 312 1 282 133 117 0 chr9 137298131 137298191 -4973253 - L1M LINE L1 -844 5330 5264 2422 215 42 81 chr9 137298196 137298355 -4973089 - L1M4 LINE L1 -3084 3298 3134 2150 144 0 0 chr9 137298355 137298667 -4972777 - AluSx SINE Alu 0 312 1 2422 215 42 81 chr9 137298667 137298935 -4972509 - L1M4 LINE L1 -3248 3134 2857 1754 184 3 3 chr9 137298935 137299229 -4972215 - AluJo SINE Alu -18 294 1 2422 215 42 81 chr9 137299229 137299720 -4971724 - L1M4 LINE L1 -3525 2857 2348 2150 100 41 0 chr9 137299720 137300011 -4971433 + AluSx SINE Alu 1 303 -9 1783 63 0 9 chr9 137300010 137300231 -4971213 + AluY SINE Alu 74 292 -19 * 2422 215 42 81 chr9 137300011 137300231 -4971213 - L1M4 LINE L1 -4034 2348 2121 2140 123 3 0 chr9 137300231 137300537 -4970907 + AluSq SINE Alu 1 307 0 2422 215 42 81 chr9 137300537 137300594 -4970850 - L1M4 LINE L1 -4261 2121 2063 2532 65 0 3 chr9 137300594 137300904 -4970540 - AluY SINE Alu -2 309 1 2422 215 42 81 chr9 137300904 137300998 -4970446 - L1M4 LINE L1 -4319 2063 1967 1091 99 56 0 chr9 137300998 137301159 -4970285 - L1PA8 LINE L1 -6 6166 5997 2422 215 42 81 chr9 137301159 137301436 -4970008 - L1M4 LINE L1 -4415 1967 1681 2208 136 0 0 chr9 137301436 137301744 -4969700 - AluSx SINE Alu -2 310 3 2422 215 42 81 chr9 137301744 137301787 -4969657 - L1M4 LINE L1 -4701 1681 1638 2302 102 0 0 chr9 137301787 137302080 -4969364 + AluSc SINE Alu 7 299 -10 2422 215 42 81 chr9 137302080 137302543 -4968901 - L1M4 LINE L1 -4744 1638 1395 4693 133 3 13 chr9 137302543 137303241 -4968203 + LTR8 LTR ERV1 1 691 0 29035 98 44 34 chr9 137303241 137306610 -4964834 + HUERS-P1 LTR ERV1 1 3335 -2928 2286 117 3 0 chr9 137306610 137306909 -4964535 + AluSc SINE Alu 2 301 -8 29035 98 44 34 chr9 137306909 137308281 -4963163 + HUERS-P1 LTR ERV1 3335 4692 -1571 2167 137 0 0 chr9 137308281 137308581 -4962863 - AluSq SINE Alu -13 300 1 29035 98 44 34 chr9 137308581 137308916 -4962528 + HUERS-P1 LTR ERV1 4692 5022 -1241 2279 98 0 33 chr9 137308916 137309223 -4962221 + AluSq SINE Alu 1 297 -16 29035 98 44 34 chr9 137309223 137309800 -4961644 + HUERS-P1 LTR ERV1 5022 5973 -290 866 171 40 28 chr9 137309800 137309976 -4961468 + MSTB1 LTR MaLR 255 432 0 1817 185 0 3 chr9 137310239 137310541 -4960903 + AluJb SINE Alu 12 312 0 2337 98 0 3 chr9 137310633 137310928 -4960516 + AluSx SINE Alu 1 294 -18 303 245 155 25 chr9 137311317 137311441 -4960003 - MIR SINE MIR -62 146 15 2446 77 3 0 chr9 137311575 137311885 -4959559 - AluY SINE Alu 0 311 1 516 161 0 59 chr9 137312087 137312205 -4959239 + MER65C LTR ERV1 156 266 -195 247 135 0 0 chr9 137312349 137312386 -4959058 + MER65C LTR ERV1 209 245 -216 232 162 0 0 chr9 137312381 137312418 -4959026 + MER65C LTR ERV1 209 245 -216 * 227 135 0 0 chr9 137312510 137312547 -4958897 + MER65C LTR ERV1 209 245 -216 5622 150 14 37 chr9 137312553 137313545 -4957899 - LTR5 LTR ERVK 0 969 1 252 108 0 0 chr9 137313571 137313608 -4957836 + MER65C LTR ERV1 209 245 -216 710 164 0 0 chr9 137313663 137313785 -4957659 + MER65C LTR ERV1 209 330 -131 1598 147 4 19 chr9 137313811 137314076 -4957368 + AluJo SINE Alu 49 309 -3 484 165 47 106 chr9 137314277 137314447 -4956997 + MER51C LTR ERV1 454 613 -27 6300 269 29 27 chr9 137314448 137314853 -4956591 + BaEV-int LTR ERV1 4119 4521 -3264 2309 84 3 0 chr9 137314853 137315140 -4956304 + AluSx SINE Alu 1 288 -24 6300 269 29 27 chr9 137315140 137316615 -4954829 + BaEV-int LTR ERV1 4521 6004 -1781 4269 254 6 14 chr9 137316813 137317885 -4953559 + BaEV-int LTR ERV1 5587 6649 0 1222 202 34 4 chr9 137317998 137318236 -4953208 + LTR10B LTR ERV1 303 547 0 249 357 83 0 chr9 137318726 137318894 -4952550 - MER34B LTR ERV1 -83 482 301 422 192 15 85 chr9 137319000 137319130 -4952314 - MER34B LTR ERV1 -440 125 5 356 209 11 0 chr9 137319495 137319586 -4951858 + CT-rich Low_complexity Low_complexity 3 94 0 1936 221 41 30 chr9 137319586 137319839 -4951605 - L1MB3 LINE L1 -8 6175 5926 2185 114 7 0 chr9 137319839 137320136 -4951308 + AluSx SINE Alu 1 299 -13 1936 221 41 30 chr9 137320136 137320442 -4951002 - L1MB3 LINE L1 -257 5926 5610 2322 104 0 3 chr9 137320446 137320753 -4950691 - AluSx SINE Alu -6 306 1 194 278 19 0 chr9 137320795 137320849 -4950595 - L2 LINE L2 -807 2507 2453 34 72 0 0 chr9 137321654 137321723 -4949721 + GC_rich Low_complexity Low_complexity 1 69 0 422 113 48 0 chr9 137322371 137322433 -4949011 + AluS SINE Alu 3 67 -246 245 222 63 0 chr9 137322433 137322496 -4948948 + LTR9 LTR ERV1 546 612 0 4936 59 56 0 chr9 137323907 137324532 -4946912 - PABL_A LTR ERV1 0 660 1 3309 193 90 28 chr9 137324655 137325290 -4946154 - L1MB7 LINE L1 -2 6251 5656 2109 150 0 0 chr9 137325290 137325596 -4945848 - AluJb SINE Alu -6 306 1 3309 193 90 28 chr9 137325596 137325836 -4945608 - L1MB7 LINE L1 -597 5656 5432 369 0 0 0 chr9 137325836 137325877 -4945567 + (TA)n Simple_repeat Simple_repeat 2 42 0 3309 193 90 28 chr9 137325877 137326089 -4945355 - L1MB7 LINE L1 -821 5432 5093 2556 237 77 34 chr9 137326057 137326929 -4944515 - L1MB7 LINE L1 -2694 3521 2605 * 1915 162 33 3 chr9 137326929 137327232 -4944212 - AluJb SINE Alu 0 312 1 2556 237 77 34 chr9 137327232 137327295 -4944149 - L1MB7 LINE L1 -3610 2605 2546 3250 108 17 2 chr9 137327300 137327780 -4943664 - LTR15 LTR ERV1 -6 487 1 1209 277 50 48 chr9 137327780 137327902 -4943542 - L1MB7 LINE L1 -3665 2550 2430 2247 114 0 7 chr9 137327902 137328201 -4943243 + AluSx SINE Alu 1 297 -15 1209 277 50 48 chr9 137328201 137328939 -4942505 - L1MB7 LINE L1 -3785 2430 1731 1461 168 182 133 chr9 137329030 137329078 -4942366 + L1ME3 LINE L1 4274 4318 -1828 1862 159 10 22 chr9 137329078 137329392 -4942052 + AluSx SINE Alu 1 310 -2 1461 168 182 133 chr9 137329392 137329552 -4941892 + L1ME3 LINE L1 4318 4469 -1677 1679 161 73 3 chr9 137329552 137329838 -4941606 + AluJb SINE Alu 3 308 -4 1461 168 182 133 chr9 137329838 137330526 -4940918 + L1ME3 LINE L1 4469 5122 -1024 2438 119 17 31 chr9 137330526 137330680 -4940764 - L1MA2 LINE L1 -7 6297 6142 1931 117 20 96 chr9 137330680 137330885 -4940559 - AluYb8 SINE Alu -1 317 147 2410 100 0 3 chr9 137330885 137331195 -4940249 - AluSg SINE Alu -1 309 1 1931 117 20 96 chr9 137331195 137331332 -4940112 - AluYb8 SINE Alu -171 147 1 2438 119 17 31 chr9 137331332 137331596 -4939848 - L1MA2 LINE L1 -162 6142 5885 1461 168 182 133 chr9 137331596 137331682 -4939762 + L1ME3 LINE L1 5122 5306 -840 1295 169 0 0 chr9 137331682 137331883 -4939561 + AluJo SINE Alu 95 295 -17 1746 177 10 7 chr9 137331888 137332209 -4939235 + AluJb SINE Alu 1 322 0 1996 218 92 11 chr9 137332210 137332775 -4938669 + L1ME3 LINE L1 5319 5929 -235 362 208 30 30 chr9 137332822 137332923 -4938521 + L1ME3 LINE L1 6059 6159 -3 376 285 57 0 chr9 137332944 137333102 -4938342 + HAL1 LINE L1 1536 1702 -805 1853 133 5 109 chr9 137333270 137333471 -4937973 - MER44D DNA MER2_type -1885 606 386 1588 86 68 5 chr9 137333471 137333731 -4937713 + AluSq SINE Alu 47 320 0 1853 133 5 109 chr9 137333731 137333801 -4937643 - MER44D DNA MER2_type -2105 386 310 1565 187 25 35 chr9 137333801 137334116 -4937328 - AluJo SINE Alu 0 312 1 1853 133 5 109 chr9 137334116 137334217 -4937227 - MER44D DNA MER2_type -2181 310 1 344 282 93 36 chr9 137335887 137336331 -4935113 + L2 LINE L2 2456 3004 -268 514 258 158 24 chr9 137336333 137336777 -4934667 - MLT1G3 LTR MaLR -5 590 2 2170 106 0 0 chr9 137337360 137337643 -4933801 - AluSx SINE Alu -29 283 1 258 234 112 65 chr9 137337662 137337769 -4933675 + MER81 DNA DNA 2 113 -1 1663 185 57 3 chr9 137337779 137338130 -4933314 - L1MB3 LINE L1 0 6183 5814 5018 209 60 58 chr9 137540874 137541183 -4730261 + L1ME1 LINE L1 3550 3857 -2309 1595 152 52 7 chr9 137541183 137541488 -4729956 + AluJb SINE Alu 1 317 0 1530 171 30 27 chr9 137541490 137541788 -4729656 + AluJb SINE Alu 1 299 -13 5018 209 60 58 chr9 137541788 137542207 -4729237 + L1ME1 LINE L1 3857 4274 -1892 727 227 0 0 chr9 137542207 137542339 -4729105 + FLAM_A SINE Alu 1 132 -1 5018 209 60 58 chr9 137542339 137542426 -4729018 + L1ME1 LINE L1 4274 4359 -1807 806 189 95 0 chr9 137542426 137542574 -4728870 + FRAM SINE Alu 1 162 -4 5018 209 60 58 chr9 137542574 137543280 -4728164 + L1ME1 LINE L1 4359 5062 -1104 1946 128 50 0 chr9 137543280 137543577 -4727867 + AluSx SINE Alu 1 312 0 5018 209 60 58 chr9 137543577 137544373 -4727071 + L1ME1 LINE L1 5062 5885 -281 893 110 0 0 chr9 137544373 137544491 -4726953 + FLAM_C SINE Alu 1 118 -25 978 225 21 28 chr9 137544519 137544808 -4726636 + L1ME1 LINE L1 5876 6162 -4 349 171 12 12 chr9 137544824 137544906 -4726538 - L1M4 LINE L1 -1575 4571 4490 347 299 60 52 chr9 137544908 137545159 -4726285 - L1M4 LINE L1 -2456 3690 3438 286 291 0 13 chr9 137548098 137548177 -4723267 + L3 LINE CR1 1400 1477 -100 304 241 0 82 chr9 137548845 137549040 -4722404 + CT-rich Low_complexity Low_complexity 1 179 0 * 332 281 0 43 chr9 137548921 137549106 -4722338 + C-rich Low_complexity Low_complexity 1 177 0 376 276 0 35 chr9 137549159 137549333 -4722111 + C-rich Low_complexity Low_complexity 3 170 0 2324 106 0 0 chr9 137549630 137549942 -4721502 - AluSx SINE Alu 0 312 1 314 319 99 40 chr9 137550239 137550543 -4720901 + L2 LINE L2 2874 3195 -118 247 254 48 0 chr9 137550559 137550622 -4720822 + L2 LINE L2 1871 1936 -1378 285 29 0 0 chr9 137551892 137551926 -4719518 + (CCCTAA)n Simple_repeat Simple_repeat 2 35 0 259 296 125 0 chr9 137553163 137553251 -4718193 - MIR SINE MIR -54 208 110 194 353 163 11 chr9 137555052 137555236 -4716208 - L3 LINE CR1 -8 1569 1358 212 153 0 71 chr9 137555582 137555667 -4715777 + GA-rich Low_complexity Low_complexity 3 81 0 248 329 41 0 chr9 137556097 137556170 -4715274 - L3 LINE CR1 -88 1489 1414 262 347 0 0 chr9 137557342 137557417 -4714027 - L3 LINE CR1 -87 1490 1416 403 327 107 30 chr9 137557494 137557867 -4713577 - L2 LINE L2 -16 3256 2855 219 323 175 4 chr9 137558034 137558263 -4713181 + L2 LINE L2 2828 3095 -177 285 204 45 0 chr9 137558310 137558442 -4713002 + (CA)n Simple_repeat Simple_repeat 2 139 0 375 192 54 0 chr9 137558492 137558719 -4712725 + (CA)n Simple_repeat Simple_repeat 1 239 0 335 177 54 0 chr9 137558732 137558862 -4712582 + (CA)n Simple_repeat Simple_repeat 1 137 0 229 281 0 0 chr9 137560339 137560403 -4711041 + MIR3 SINE MIR 91 154 -54 287 282 92 46 chr9 137561832 137561963 -4709481 - L2 LINE L2 0 3272 3136 704 225 2 2 chr9 137562377 137562937 -4708507 + (TGGA)n Simple_repeat Simple_repeat 1 560 0 287 290 145 8 chr9 137564956 137565080 -4706364 + MIR SINE MIR 13 153 -109 279 301 44 0 chr9 137565168 137565281 -4706163 - LTR16C LTR ERVL -155 336 219 547 227 144 22 chr9 137565331 137565884 -4705560 - MLT1E3 LTR MaLR -1 623 152 514 260 47 95 chr9 137566141 137566324 -4705120 - L2 LINE L2 -73 3199 3009 2380 67 0 3 chr9 137566324 137566621 -4704823 - AluSx SINE Alu -16 296 1 514 260 47 95 chr9 137566621 137566875 -4704569 - L2 LINE L2 -263 3009 2784 1782 166 0 14 chr9 137566923 137567218 -4704226 + AluJb SINE Alu 1 291 -21 644 287 129 7 chr9 137567355 137567833 -4703611 + MLT1E1 LTR MaLR 58 654 0 296 316 26 18 chr9 137568505 137568619 -4702825 - MIR SINE MIR -68 140 26 282 328 107 62 chr9 137569666 137570069 -4701375 + L2 LINE L2 2852 3272 0 321 209 104 0 chr9 137570502 137570569 -4700875 + MIR SINE MIR 74 147 -61 351 273 20 10 chr9 137570626 137570725 -4700719 + MIR SINE MIR 27 126 -136 305 364 77 10 chr9 137571844 137572095 -4699349 - L1MEd LINE L1 -1218 1272 979 2034 133 0 3 chr9 137572325 137572619 -4698825 - AluSx SINE Alu -19 293 1 2433 87 0 0 chr9 137574733 137575044 -4696400 - AluSx SINE Alu -1 311 1 232 297 195 8 chr9 137575338 137575456 -4695988 - MIR SINE MIR -100 162 23 1423 198 58 71 chr9 137575568 137575793 -4695651 - MLT1B LTR MaLR -1 389 170 2026 95 57 10 chr9 137575793 137576089 -4695355 - AluSg SINE Alu 0 310 1 1423 198 58 71 chr9 137576089 137576257 -4695187 - MLT1B LTR MaLR -220 170 1 250 326 151 4 chr9 137576639 137576878 -4694566 - L1ME3A LINE L1 -189 6050 5777 603 272 106 16 chr9 137576896 137577150 -4694294 - L1ME3A LINE L1 -527 5704 5428 1198 100 0 0 chr9 137577158 137577318 -4694126 - AluSp SINE Alu -17 296 137 311 253 80 13 chr9 137577336 137577486 -4693958 - L1ME3A LINE L1 -798 5417 5258 243 331 103 7 chr9 137577664 137577800 -4693644 - LTR16A LTR ERVL -286 164 16 1154 264 78 39 chr9 137577819 137578456 -4692988 - L1ME3A LINE L1 -3084 3131 2463 2201 98 3 0 chr9 137578456 137578743 -4692701 + AluSx SINE Alu 1 288 -24 1154 264 78 39 chr9 137578743 137578802 -4692642 - L1ME3A LINE L1 -3752 2463 2408 2385 93 0 0 chr9 137579013 137579365 -4692079 - AluSx SINE Alu 0 352 1 811 176 0 0 chr9 137579365 137579501 -4691943 - AluJo SINE Alu -176 136 1 562 307 4 13 chr9 137579501 137579726 -4691718 - L1ME3A LINE L1 -4548 1848 1626 452 277 31 0 chr9 137579788 137579918 -4691526 - MIR SINE MIR -48 214 81 604 266 48 75 chr9 137579918 137580335 -4691109 - MLT2D LTR ERVL 0 515 15 2197 115 3 0 chr9 137580336 137580632 -4690812 - AluSx SINE Alu -15 297 1 217 238 13 39 chr9 137580660 137580750 -4690694 - MIR SINE MIR -122 86 1 621 305 65 42 chr9 137580913 137581516 -4689928 - L1ME3A LINE L1 -4759 1637 1021 264 59 0 0 chr9 137582336 137582370 -4689074 + (CA)n Simple_repeat Simple_repeat 2 35 0 2197 108 0 13 chr9 137582492 137582806 -4688638 - AluSx SINE Alu -2 310 1 226 301 78 19 chr9 137583543 137583646 -4687798 + MIR SINE MIR 36 144 -64 1186 270 99 40 chr9 137584142 137584427 -4687017 - L1MC3 LINE L1 -9 7776 7509 2354 68 0 3 chr9 137584427 137584723 -4686721 - AluY SINE Alu -16 295 1 1483 141 22 52 chr9 137584723 137584993 -4686451 - AluSx SINE Alu -12 300 39 1186 270 99 40 chr9 137584993 137585281 -4686163 - L1MC3 LINE L1 -275 7510 7168 1435 180 4 4 chr9 137586892 137587147 -4684297 - AluJo SINE Alu -4 308 54 2159 122 0 0 chr9 137587173 137587469 -4683975 + AluSx SINE Alu 1 296 -16 184 292 73 21 chr9 137587644 137587740 -4683704 + L2 LINE L2 3194 3294 -19 227 213 0 0 chr9 137589320 137589367 -4682077 + MIR SINE MIR 110 156 -106 187 351 112 29 chr9 137591147 137591495 -4679949 - L2 LINE L2 -342 2972 2596 191 188 0 0 chr9 137592924 137592956 -4678488 - MIR SINE MIR -11 251 220 268 327 35 9 chr9 137592961 137593074 -4678370 + MIR SINE MIR 19 134 -74 407 240 10 0 chr9 137596183 137596283 -4675161 + L1ME1 LINE L1 5717 5817 -349 374 284 40 20 chr9 137596375 137596523 -4674921 + L1ME1 LINE L1 6012 6162 -4 228 304 0 0 chr9 137597500 137597556 -4673888 - MIR SINE MIR -110 152 97 304 225 50 0 chr9 137597629 137597709 -4673735 + MER5B DNA MER1_type 63 146 -32 783 291 110 19 chr9 137597765 137598246 -4673198 - MER20B DNA MER1_type -59 724 200 234 179 0 36 chr9 137598292 137598348 -4673096 - MER20B DNA MER1_type -702 81 28 455 217 33 53 chr9 137598564 137598716 -4672728 + MER96B DNA MER1_type? 87 235 -182 503 285 22 39 chr9 137599011 137599045 -4672399 + MER5B DNA MER1_type 3 36 -142 2373 61 3 0 chr9 137599045 137599341 -4672103 - AluY SINE Alu -14 297 1 503 285 22 39 chr9 137599341 137599485 -4671959 + MER5B DNA MER1_type 36 178 0 233 313 30 58 chr9 137599722 137599927 -4671517 - MIR3 SINE MIR -51 211 13 285 270 14 0 chr9 137600800 137600874 -4670570 - MIR SINE MIR -149 113 39 374 119 45 15 chr9 137601369 137601436 -4670008 + L1MC1 LINE L1 6252 6320 -13 2102 110 17 0 chr9 137601944 137602245 -4669199 - AluSx SINE Alu -6 306 1 1025 163 49 10 chr9 137602968 137603171 -4668273 - L1MB5 LINE L1 0 6174 5964 210 268 0 0 chr9 137603234 137603290 -4668154 + T-rich Low_complexity Low_complexity 1 56 0 362 307 55 74 chr9 137603364 137603612 -4667832 + L1MCa LINE L1 2278 6218 -183 1436 260 11 28 chr9 137603849 137603891 -4667553 - L1MB5 LINE L1 -207 5967 5926 1754 160 14 7 chr9 137603891 137604179 -4667265 - AluJb SINE Alu -11 301 12 1436 260 11 28 chr9 137604179 137604601 -4666843 - L1MB5 LINE L1 -248 5926 5565 338 330 10 0 chr9 137604652 137604752 -4666692 - MIR SINE MIR -67 195 95 300 386 41 0 chr9 137606617 137606762 -4664682 + MIR SINE MIR 84 234 -28 181 369 98 0 chr9 137607950 137608072 -4663372 + MIR3 SINE MIR 39 172 -36 183 338 12 0 chr9 137609186 137609266 -4662178 - MIR SINE MIR -76 186 106 240 226 65 16 chr9 137610161 137610223 -4661221 + MIR SINE MIR 47 111 -151 218 328 0 0 chr9 137611259 137611317 -4660127 - L2 LINE L2 0 3272 3215 248 297 55 11 chr9 137616183 137616274 -4655170 - MIR SINE MIR -133 129 35 321 205 0 18 chr9 137616664 137616835 -4654609 + (CA)n Simple_repeat Simple_repeat 1 168 0 225 236 0 17 chr9 137616881 137617059 -4654385 + (CA)n Simple_repeat Simple_repeat 1 175 0 252 188 0 73 chr9 137617060 137617156 -4654288 + (CTCA)n Simple_repeat Simple_repeat 4 92 0 283 242 8 4 chr9 137617158 137617410 -4654034 + (CA)n Simple_repeat Simple_repeat 1 253 0 241 267 162 16 chr9 137617411 137617602 -4653842 + L2 LINE L2 2836 3054 -218 300 302 142 33 chr9 137618371 137618646 -4652798 + L1ME3A LINE L1 5864 6168 -2 214 296 0 0 chr9 137618835 137618879 -4652565 + G-rich Low_complexity Low_complexity 6 49 0 224 398 0 17 chr9 137619100 137619218 -4652226 + (CGTG)n Simple_repeat Simple_repeat 4 119 0 225 278 0 0 chr9 137619163 137619217 -4652227 + (TG)n Simple_repeat Simple_repeat 1 54 0 255 278 187 16 chr9 137619635 137619774 -4651670 + MIR3 SINE MIR 3 150 -67 337 336 26 0 chr9 137620496 137620612 -4650832 - MIR SINE MIR -116 146 28 226 307 13 0 chr9 137620885 137620960 -4650484 - L1ME LINE L1 -405 5759 5684 329 279 227 12 chr9 137621168 137621340 -4650104 - MIR SINE MIR -32 230 22 183 222 0 0 chr9 137621737 137621782 -4649662 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 251 283 131 0 chr9 137622624 137622723 -4648721 - MER5A DNA MER1_type -75 114 3 403 115 39 10 chr9 137623080 137623184 -4648260 + (TG)n Simple_repeat Simple_repeat 2 108 0 246 32 0 0 chr9 137623287 137623318 -4648126 + (TG)n Simple_repeat Simple_repeat 1 31 0 2252 97 0 7 chr9 137623389 137623689 -4647755 + AluSq SINE Alu 1 298 -15 1595 166 3 17 chr9 137623755 137624044 -4647400 - AluJo SINE Alu 0 312 28 307 374 7 20 chr9 137625019 137625166 -4646278 + MIR SINE MIR 82 226 -36 24 0 0 0 chr9 137625242 137625266 -4646178 + GC_rich Low_complexity Low_complexity 1 24 0 561 306 35 10 chr9 137626740 137626961 -4644483 - MIR SINE MIR -35 227 3 1621 234 141 19 chr9 137628096 137628557 -4642887 - MLT2B1 LTR ERVL -3 517 1 210 234 0 0 chr9 137629566 137629613 -4641831 + MIR SINE MIR 87 133 -129 273 248 179 0 chr9 137630571 137630688 -4640756 + L2 LINE L2 3175 3312 -1 421 239 52 39 chr9 137632761 137632916 -4638528 - MLT2D LTR ERVL -257 157 1 193 264 306 0 chr9 137633758 137633879 -4637565 + L2 LINE L2 2932 3089 -183 609 229 29 18 chr9 137633906 137634076 -4637368 - MLT1C LTR MaLR -295 172 1 290 250 106 39 chr9 137635238 137635342 -4636102 - MIR SINE MIR -65 197 87 1272 268 80 21 chr9 137635790 137636072 -4635372 + L1MB7 LINE L1 5704 6023 -161 2415 86 0 6 chr9 137636072 137636387 -4635057 - AluSq SINE Alu 0 313 1 1272 268 80 21 chr9 137636387 137636540 -4634904 + L1MB7 LINE L1 6023 6165 -19 2841 181 27 14 chr9 137636564 137637077 -4634367 + MLT2B1 LTR ERVL 1 520 0 325 250 102 0 chr9 137637207 137637295 -4634149 - MIR3 SINE MIR -3 205 109 2484 199 63 25 chr9 137637463 137637985 -4633459 - MLT1F LTR MaLR 0 542 1 1462 210 69 0 chr9 137638365 137638656 -4632788 + AluJo SINE Alu 1 311 -1 287 188 45 30 chr9 137638656 137638789 -4632655 + GA-rich Low_complexity Low_complexity 1 135 0 554 216 23 6 chr9 137638800 137638971 -4632473 + GA-rich Low_complexity Low_complexity 3 176 0 207 98 73 0 chr9 137639081 137639122 -4632322 + GA-rich Low_complexity Low_complexity 2 45 0 25 31 0 0 chr9 137640069 137640101 -4631343 + AT_rich Low_complexity Low_complexity 1 32 0 278 256 82 20 chr9 137640101 137640296 -4631148 + L1ME4a LINE L1 5866 6072 -49 388 254 17 73 chr9 137640747 137640852 -4630592 + MER69A DNA AcHobo 8 117 -2409 2327 62 0 3 chr9 137640852 137641143 -4630301 - AluY SINE Alu -21 290 1 2090 114 7 3 chr9 137641143 137641440 -4630004 - AluSq SINE Alu -15 298 1 388 254 17 73 chr9 137641440 137641510 -4629934 + MER69A DNA AcHobo 115 174 -3 419 346 101 37 chr9 137641573 137641980 -4629464 + L2 LINE L2 2835 3267 -5 244 243 54 0 chr9 137643007 137643081 -4628363 + MIR SINE MIR 108 185 -77 184 329 114 0 chr9 137643208 137643278 -4628166 + MIR SINE MIR 92 169 -93 812 180 0 25 chr9 137643323 137643690 -4627754 + (ATGGTG)n Simple_repeat Simple_repeat 1 357 0 715 186 6 6 chr9 137643702 137643879 -4627565 + (ATGGTG)n Simple_repeat Simple_repeat 1 177 0 815 168 0 6 chr9 137644006 137644179 -4627265 + (ATG)n Simple_repeat Simple_repeat 1 172 0 1619 272 47 4 chr9 137644274 137644767 -4626677 + MLT1H1 LTR MaLR 42 555 0 228 325 103 28 chr9 137645289 137645447 -4625997 - MIR SINE MIR -68 140 21 246 317 133 36 chr9 137647034 137647171 -4624273 - MIR SINE MIR -59 149 18 2132 225 59 65 chr9 137647218 137647652 -4623792 - L1ME LINE L1 -457 5707 5272 1987 137 0 3 chr9 137647652 137647960 -4623484 + AluSx SINE Alu 1 307 0 2132 225 59 65 chr9 137647960 137648561 -4622883 - L1ME LINE L1 -892 5272 4672 2200 94 13 0 chr9 137648561 137648859 -4622585 - AluSp SINE Alu -11 302 1 2132 225 59 65 chr9 137648859 137649098 -4622346 - L1ME LINE L1 -1492 4672 4433 248 186 17 0 chr9 137649134 137649193 -4622251 + (TA)n Simple_repeat Simple_repeat 1 60 0 2074 245 46 33 chr9 137649193 137650080 -4621364 - L1 LINE L1 -1488 4658 3730 1776 242 37 22 chr9 137650128 137650581 -4620863 - L1 LINE L1 -2586 3560 3094 1748 181 7 10 chr9 137650581 137650890 -4620554 - AluJo SINE Alu -4 308 1 1776 242 37 22 chr9 137650890 137651031 -4620413 - L1 LINE L1 -3052 3094 2957 233 284 40 0 chr9 137651684 137651758 -4619686 - MIR SINE MIR -100 162 86 363 254 111 0 chr9 137652210 137652336 -4619108 - MIR SINE MIR -74 188 49 196 293 0 17 chr9 137653439 137653497 -4617947 + MIR SINE MIR 93 149 -59 191 357 93 22 chr9 137654659 137654928 -4616516 + L3 LINE CR1 1097 1384 -193 229 177 0 16 chr9 137654940 137655002 -4616442 - L1ME4a LINE L1 -1 6120 6060 249 159 0 0 chr9 137658442 137658486 -4612958 + (TG)n Simple_repeat Simple_repeat 2 45 0 258 289 105 18 chr9 137659614 137659728 -4611716 - MIR3 SINE MIR -44 164 41 186 281 47 16 chr9 137659970 137660034 -4611410 + MIR SINE MIR 91 156 -106 288 145 26 13 chr9 137660555 137660631 -4610813 + CT-rich Low_complexity Low_complexity 2 78 0 487 306 41 0 chr9 137662225 137662372 -4609072 - MIR SINE MIR -64 198 46 30 27 0 0 chr9 137663232 137663269 -4608175 + GC_rich Low_complexity Low_complexity 1 37 0 23 40 0 0 chr9 137663946 137663971 -4607473 + GC_rich Low_complexity Low_complexity 1 25 0 248 250 191 0 chr9 137665027 137665111 -4606333 - MIR SINE MIR -113 149 50 200 194 0 0 chr9 137665217 137665253 -4606191 + (CA)n Simple_repeat Simple_repeat 1 36 0 258 246 0 0 chr9 137671658 137671723 -4599721 + MIR SINE MIR 65 129 -79 308 250 26 0 chr9 137672305 137672381 -4599063 + MIR SINE MIR 66 143 -65 298 222 86 17 chr9 137672376 137672493 -4598951 - L2 LINE L2 -203 3069 2945 * 279 333 23 0 chr9 137673489 137673576 -4597868 + MIR SINE MIR 65 153 -109 213 175 0 0 chr9 137674369 137674409 -4597035 + (TCCG)n Simple_repeat Simple_repeat 2 41 0 397 281 18 18 chr9 137674482 137674596 -4596848 + MIR SINE MIR 28 141 -121 188 293 142 19 chr9 137674659 137674765 -4596679 - L2 LINE L2 -175 3097 2979 184 211 39 0 chr9 137675081 137675133 -4596311 - L2 LINE L2 -83 3189 3136 326 230 0 7 chr9 137676482 137676621 -4594823 + (TG)n Simple_repeat Simple_repeat 1 138 0 609 179 0 0 chr9 137676653 137676815 -4594629 + (TG)n Simple_repeat Simple_repeat 1 162 0 318 253 0 0 chr9 137676849 137677007 -4594437 + (TG)n Simple_repeat Simple_repeat 1 158 0 268 361 0 6 chr9 137677047 137677227 -4594217 + (TG)n Simple_repeat Simple_repeat 2 180 0 369 285 0 23 chr9 137678286 137678391 -4593053 - MIR SINE MIR -70 138 37 220 213 114 23 chr9 137679372 137679492 -4591952 - MIR SINE MIR -61 147 62 341 283 39 78 chr9 137680183 137680363 -4591081 + MIR SINE MIR 31 203 -59 257 226 32 0 chr9 137682974 137683036 -4588408 + L2 LINE L2 3018 3081 -191 206 257 149 0 chr9 137687373 137687447 -4583997 + MIR SINE MIR 55 139 -69 553 237 83 35 chr9 137691546 137691715 -4579729 + MER5B DNA MER1_type 2 178 0 479 138 0 43 chr9 137892880 137893018 -4378426 + (GGA)n Simple_repeat Simple_repeat 3 134 0 239 241 0 36 chr9 137893022 137893105 -4378339 + G-rich Low_complexity Low_complexity 5 84 0 219 214 0 0 chr9 137893109 137893179 -4378265 + GA-rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr9 137893321 137893343 -4378101 + AT_rich Low_complexity Low_complexity 1 22 0 934 166 12 0 chr9 137893572 137893735 -4377709 + FRAM SINE Alu 1 164 -12 301 280 15 53 chr9 137893768 137893799 -4377645 + L1M4 LINE L1 2654 2685 -3461 1893 93 0 0 chr9 137893799 137894045 -4377399 - AluSg SINE Alu -17 293 48 301 280 15 53 chr9 137894045 137894145 -4377299 + L1M4 LINE L1 2685 2780 -3366 963 123 7 7 chr9 137894259 137894405 -4377039 + AluSq/x SINE Alu 1 146 -167 392 168 0 19 chr9 137894460 137894567 -4376877 + CT-rich Low_complexity Low_complexity 1 105 0 1209 169 154 23 chr9 137896679 137896945 -4374499 - AluJb SINE Alu -11 301 1 2265 95 7 0 chr9 137897630 137897924 -4373520 - AluSx SINE Alu -16 296 1 225 91 0 0 chr9 137898084 137898117 -4373327 - L1ME LINE L1 -478 5643 5611 798 206 71 0 chr9 137899177 137899332 -4372112 - FRAM SINE Alu -10 166 1 22 56 0 0 chr9 137900770 137900806 -4370638 + AT_rich Low_complexity Low_complexity 1 36 0 219 133 0 0 chr9 137901673 137901718 -4369726 + (A)n Simple_repeat Simple_repeat 1 45 0 209 73 0 73 chr9 137902075 137902116 -4369328 + (T)n Simple_repeat Simple_repeat 1 38 0 180 211 0 0 chr9 137905789 137905827 -4365617 + L2 LINE L2 2323 2360 -954 920 237 24 45 chr9 137905829 137905961 -4365483 + L1MEc LINE L1 2139 2272 -4124 2287 86 0 10 chr9 137905961 137906275 -4365169 + AluY SINE Alu 1 311 0 920 237 24 45 chr9 137906275 137906518 -4364926 + L1MEc LINE L1 2272 2506 -3890 2257 86 3 10 chr9 137906524 137906837 -4364607 + AluSx SINE Alu 1 311 -1 1499 108 0 5 chr9 137907390 137907604 -4363840 - AluSg/x SINE Alu -8 304 92 253 146 0 0 chr9 137907604 137907645 -4363799 - Alu SINE Alu -261 41 1 583 173 31 47 chr9 137907702 137907829 -4363615 - AluJb SINE Alu -187 125 1 249 162 19 10 chr9 137907830 137907885 -4363559 + L1MEc LINE L1 3696 3751 -2464 1043 153 31 126 chr9 137907885 137908146 -4363298 + MER46A DNA MER2_type 1 236 0 218 244 0 0 chr9 137908181 137908222 -4363222 + polypurine Low_complexity Low_complexity 4 44 0 280 354 27 14 chr9 137908371 137908518 -4362926 + L2 LINE L2 2591 2739 -575 414 121 0 0 chr9 137909386 137909452 -4361992 + (TTC)n Simple_repeat Simple_repeat 2 67 0 212 264 132 11 chr9 137909632 137909723 -4361721 + MIR SINE MIR 37 138 -70 969 36 0 0 chr9 137909813 137909924 -4361520 - L1PA7 LINE L1 -12 6142 6032 1059 181 0 0 chr9 137911713 137911879 -4359565 + AluJb SINE Alu 120 285 -27 303 93 0 0 chr9 137911886 137911929 -4359515 + (CA)n Simple_repeat Simple_repeat 2 44 0 210 118 0 0 chr9 137913929 137913963 -4357481 + (CA)n Simple_repeat Simple_repeat 1 34 0 305 312 55 0 chr9 137917824 137917933 -4353511 - MIR SINE MIR -126 136 22 579 223 32 38 chr9 137918915 137919072 -4352372 + MIR SINE MIR 88 243 -19 217 220 170 50 chr9 137919355 137919455 -4351989 + MIR SINE MIR 25 136 -126 294 29 0 0 chr9 137921089 137921124 -4350320 + (TG)n Simple_repeat Simple_repeat 2 36 0 2322 86 0 7 chr9 137921126 137921430 -4350014 - AluSx SINE Alu -10 302 1 309 238 25 0 chr9 137923974 137924054 -4347390 - MER63 DNA MER1_type -301 760 679 485 289 96 30 chr9 137924373 137924643 -4346801 + L2 LINE L2 2580 2867 -447 183 312 91 0 chr9 138025175 138025252 -4246192 + L2 LINE L2 3143 3226 -46 2023 134 7 3 chr9 138026548 138026854 -4244590 - AluSx SINE Alu -5 307 1 329 327 101 10 chr9 138027920 138028119 -4243325 + L2 LINE L2 2830 3046 -267 616 304 47 5 chr9 138028419 138028633 -4242811 - MIR SINE MIR -18 244 22 2392 86 0 6 chr9 138028979 138029294 -4242150 - AluSq SINE Alu 0 313 1 2000 121 15 27 chr9 138029806 138030144 -4241300 - THE1C LTR MaLR -41 334 1 268 405 55 0 chr9 138030427 138030590 -4240854 - L2 LINE L2 -1 3271 3100 427 299 32 75 chr9 138030598 138030657 -4240787 - MER33 DNA MER1_type -2319 266 206 625 199 86 33 chr9 138030657 138030808 -4240636 + FRAM SINE Alu 1 159 -7 427 299 32 75 chr9 138030808 138031026 -4240418 - MER33 DNA MER1_type -2379 206 1 195 297 84 58 chr9 138031357 138031512 -4239932 - L2 LINE L2 -96 3176 3018 320 353 17 0 chr9 138034223 138034339 -4237105 + MIR3 SINE MIR 90 207 -1 277 309 40 10 chr9 138035570 138035691 -4235753 - MIR SINE MIR -57 151 26 183 206 191 15 chr9 138035859 138035927 -4235517 - L2 LINE L2 -211 3061 2982 211 318 55 45 chr9 138036869 138036979 -4234465 + L2 LINE L2 3201 3311 -2 263 309 0 31 chr9 138037028 138037125 -4234319 + L2 LINE L2 2976 3069 -203 436 271 43 29 chr9 138037440 138037580 -4233864 - MIR SINE MIR -71 191 50 232 298 128 14 chr9 138037760 138037901 -4233543 + MIR SINE MIR 28 184 -78 192 125 0 0 chr9 138037948 138037980 -4233464 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 2456 55 6 6 chr9 138039825 138040136 -4231308 + AluY SINE Alu 1 311 0 191 346 102 16 chr9 138040323 138040450 -4230994 + L2 LINE L2 3126 3263 -9 2158 105 0 7 chr9 138040986 138041282 -4230162 - AluSc SINE Alu -15 294 1 250 189 57 0 chr9 138041393 138041446 -4229998 + L3 LINE CR1 1415 1470 -107 627 241 91 21 chr9 138042419 138042734 -4228710 - MLT1C LTR MaLR -18 372 38 254 229 101 37 chr9 138042931 138043040 -4228404 + L2 LINE L2 3123 3238 -34 208 294 64 18 chr9 138044705 138044814 -4226630 - MIR SINE MIR -55 153 40 190 240 93 53 chr9 138044957 138045032 -4226412 + L2 LINE L2 616 693 -2621 195 297 11 44 chr9 138045153 138045244 -4226200 + L2 LINE L2 2698 2785 -529 242 298 33 74 chr9 138045298 138045419 -4226025 - MIR SINE MIR -70 192 77 567 150 21 54 chr9 138046024 138046264 -4225180 + CT-rich Low_complexity Low_complexity 1 232 0 220 222 19 0 chr9 138046438 138046492 -4224952 - MIR SINE MIR -100 162 108 376 270 117 6 chr9 138047523 138047686 -4223758 - MER5A DNA MER1_type -8 181 1 216 297 131 55 chr9 138047880 138048170 -4223274 + L2 LINE L2 2957 3268 -4 487 215 130 24 chr9 138048661 138048820 -4222624 + MER5A DNA MER1_type 1 187 -2 450 301 24 0 chr9 138048823 138048989 -4222455 + MER5B DNA MER1_type 9 178 0 211 282 141 0 chr9 138049124 138049202 -4222242 - MIR SINE MIR -108 154 66 190 234 43 0 chr9 138049658 138049705 -4221739 - L2 LINE L2 -18 3254 3206 201 319 113 40 chr9 138050269 138050517 -4220927 + L2 LINE L2 2824 3089 -183 306 312 161 29 chr9 138050622 138050933 -4220511 - L2 LINE L2 -93 3179 2828 2128 120 0 10 chr9 138051108 138051417 -4220027 - AluSx SINE Alu -6 306 1 282 212 45 0 chr9 138051419 138051485 -4219959 - MER5A DNA MER1_type -115 74 6 238 255 191 14 chr9 138051499 138051640 -4219804 + L2 LINE L2 2013 2178 -1136 331 280 159 46 chr9 138051679 138051918 -4219526 + L2 LINE L2 3048 3313 0 260 267 69 59 chr9 138052264 138052365 -4219079 + MIR SINE MIR 67 168 -94 2480 256 42 21 chr9 138052476 138053893 -4217551 + L1MEc LINE L1 144 1648 -4748 282 56 0 0 chr9 138054565 138054601 -4216843 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 406 328 105 8 chr9 138055055 138055302 -4216142 + L2 LINE L2 2822 3092 -180 219 203 0 0 chr9 138055385 138055454 -4215990 + (TG)n Simple_repeat Simple_repeat 2 70 0 460 246 11 0 chr9 138055467 138055642 -4215802 + (TG)n Simple_repeat Simple_repeat 1 177 0 475 240 6 6 chr9 138055653 138055832 -4215612 + (TG)n Simple_repeat Simple_repeat 1 179 0 627 186 6 22 chr9 138055881 138056064 -4215380 + (TG)n Simple_repeat Simple_repeat 1 180 0 681 161 6 11 chr9 138056085 138056265 -4215179 + (TG)n Simple_repeat Simple_repeat 2 180 0 321 236 132 28 chr9 138058239 138058345 -4213099 - MIR SINE MIR -118 144 28 319 229 52 21 chr9 138059641 138059737 -4211707 + L2 LINE L2 2990 3088 -184 2125 109 0 29 chr9 138059798 138060110 -4211334 - AluSx SINE Alu -9 303 1 186 43 0 0 chr9 138060453 138060476 -4210968 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 243 188 83 0 chr9 138060678 138060726 -4210718 - MER5A DNA MER1_type -91 98 47 180 0 0 0 chr9 138060728 138060748 -4210696 + (CTG)n Simple_repeat Simple_repeat 1 20 0 367 308 130 7 chr9 138061194 138061340 -4210104 - MIR SINE MIR -97 165 2 220 320 144 21 chr9 138061792 138062076 -4209368 + L2 LINE L2 2535 2853 -461 208 277 0 0 chr9 138062134 138062181 -4209263 - MIR SINE MIR -166 96 50 392 243 119 51 chr9 138063125 138063302 -4208142 - MIR3 SINE MIR -14 194 6 467 307 77 5 chr9 138064438 138064672 -4206772 + MIR SINE MIR 4 250 -12 21 100 0 0 chr9 138065347 138065417 -4206027 + GC_rich Low_complexity Low_complexity 1 70 0 378 266 152 41 chr9 138065597 138065795 -4205649 + MIR SINE MIR 44 262 0 548 351 49 0 chr9 138065877 138066102 -4205342 + L3 LINE CR1 1234 1469 -108 212 321 49 0 chr9 138066139 138066220 -4205224 + MIR SINE MIR 167 251 -11 2163 110 10 10 chr9 138066224 138066533 -4204911 - AluSx SINE Alu -3 309 1 225 217 138 6 chr9 138066629 138066737 -4204707 - MIR3 SINE MIR -52 156 71 471 329 7 13 chr9 138067052 138067201 -4204243 - MIR SINE MIR -1 261 114 183 129 0 0 chr9 138067340 138067371 -4204073 + (GA)n Simple_repeat Simple_repeat 1 31 0 321 273 141 0 chr9 138067796 138067895 -4203549 - MIR SINE MIR -76 186 74 235 290 16 0 chr9 138068860 138068922 -4202522 + L3 LINE CR1 1419 1481 -96 253 258 34 56 chr9 138070221 138070310 -4201134 - MIR SINE MIR -87 175 89 345 256 202 8 chr9 138071173 138071302 -4200142 + L2 LINE L2 3159 3312 -1 380 324 97 5 chr9 138071839 138072024 -4199420 + L2 LINE L2 2844 3045 -227 383 297 27 0 chr9 138072147 138072258 -4199186 - L2 LINE L2 -14 3258 3145 231 376 19 1 chr9 138072378 138072503 -4198941 + MIR SINE MIR 20 145 -71 253 265 141 16 chr9 138074073 138074258 -4197186 + LTR33 LTR ERVL 304 511 -10 2057 110 0 20 chr9 138074480 138074779 -4196665 - AluSq SINE Alu -20 293 1 839 240 60 20 chr9 138075160 138075360 -4196084 + MIR SINE MIR 3 210 -52 488 258 32 7 chr9 138075362 138075517 -4195927 - MER104 DNA Tc2 -9 171 13 293 239 14 0 chr9 138075644 138075715 -4195729 + Charlie1 DNA MER1_type 2688 2759 -2 256 218 0 0 chr9 138076388 138076443 -4195001 - Tigger7 DNA MER2_type -40 2447 2393 2237 201 46 20 chr9 138076449 138076471 -4194973 - Tigger7 DNA MER2_type -216 517 497 2342 91 7 3 chr9 138076471 138076780 -4194664 - AluSx SINE Alu -2 310 1 2237 201 46 20 chr9 138076780 138077260 -4194184 - Tigger7 DNA MER2_type -236 497 2 234 291 88 109 chr9 138077319 138077365 -4194079 - HAL1 LINE L1 -737 1770 1725 2337 79 0 28 chr9 138077365 138077683 -4193761 - AluY SINE Alu -2 309 1 234 291 88 109 chr9 138077683 138078480 -4192964 - HAL1 LINE L1 -782 1725 945 182 303 30 15 chr9 138078624 138078690 -4192754 + L2 LINE L2 1138 1204 -2110 2290 134 18 32 chr9 138079374 138079754 -4191690 + THE1C LTR MaLR 1 375 0 1634 183 3 24 chr9 138079932 138080222 -4191222 + AluJo SINE Alu 1 284 -28 2330 112 128 18 chr9 138080416 138080800 -4190644 - MSTA LTR MaLR 0 428 3 6597 178 32 66 chr9 138080802 138082594 -4188850 - MSTA-int LTR MaLR 0 1735 2 1284 156 110 11 chr9 138082596 138082859 -4188585 - MSTA LTR MaLR 0 428 140 2550 98 34 14 chr9 138082859 138083216 -4188228 - THE1B LTR MaLR 0 364 1 335 348 102 43 chr9 138083895 138084151 -4187293 + L1ME3 LINE L1 5653 5923 -239 2506 200 35 3 chr9 138084153 138084723 -4186721 + L1MB3 LINE L1 5573 6160 -23 191 204 130 0 chr9 138084972 138085026 -4186418 - MIR SINE MIR -107 155 95 264 261 0 87 chr9 138086330 138086445 -4184999 + LTR16C LTR ERVL 387 491 0 1329 204 166 2 chr9 138086540 138086967 -4184477 - MLT1D LTR MaLR -8 497 1 188 275 50 38 chr9 138087355 138087435 -4184009 - MIR SINE MIR -119 143 63 216 0 0 0 chr9 138087716 138087740 -4183704 + (TG)n Simple_repeat Simple_repeat 2 25 0 1766 152 0 29 chr9 138088333 138088642 -4182802 - AluJo SINE Alu -12 300 1 345 109 0 0 chr9 138089243 138089298 -4182146 + (CCCCCA)n Simple_repeat Simple_repeat 5 59 0 207 196 43 0 chr9 138091213 138091259 -4180185 + GA-rich Low_complexity Low_complexity 4 51 0 905 177 56 0 chr9 138094422 138094637 -4176807 - MER74B LTR ERVL -192 430 204 971 120 0 0 chr9 138095079 138095212 -4176232 + FLAM_C SINE Alu 1 133 0 523 304 25 6 chr9 138096310 138096471 -4174973 + MIR3 SINE MIR 33 196 -12 1157 214 73 9 chr9 138096692 138097033 -4174411 - MER74B LTR ERVL -56 566 204 232 116 0 0 chr9 138097124 138097167 -4174277 - MER74B LTR ERVL -579 43 1 252 296 31 10 chr9 138097180 138097278 -4174166 - MIR SINE MIR -67 141 42 246 211 99 0 chr9 138098892 138098963 -4172481 - MIR SINE MIR -117 145 68 212 236 45 90 chr9 138098981 138099070 -4172374 - MIR SINE MIR -147 115 31 257 333 12 0 chr9 138099241 138099325 -4172119 - MIR3 SINE MIR -15 193 109 311 212 12 0 chr9 138100904 138100989 -4170455 + (CA)n Simple_repeat Simple_repeat 2 87 0 332 321 9 28 chr9 138101739 138101848 -4169596 + MIR SINE MIR 47 153 -109 2244 92 3 3 chr9 138102494 138102788 -4168656 - AluSx SINE Alu -18 294 1 245 230 68 0 chr9 138104563 138104637 -4166807 - MER96 DNA MER1_type? 0 175 97 314 300 96 18 chr9 138104845 138105289 -4166155 - L1MC/D LINE L1 -748 5398 5195 285 336 164 15 chr9 138105295 138105429 -4166015 - MIR SINE MIR -92 170 17 319 282 34 34 chr9 138106383 138106500 -4164944 - L1MC/D LINE L1 -2956 3190 3074 2159 132 6 0 chr9 138106500 138106811 -4164633 - AluSq SINE Alu 0 313 1 202 200 0 0 chr9 138108322 138108362 -4163082 + GA-rich Low_complexity Low_complexity 4 43 0 722 256 44 0 chr9 138109083 138109263 -4162181 + MER5A DNA MER1_type 1 188 -1 1538 117 133 0 chr9 138110061 138110345 -4161099 - AluSx SINE Alu 0 317 1 414 262 19 0 chr9 138110356 138110463 -4160981 - MIR SINE MIR -67 141 33 182 288 85 0 chr9 138110700 138110759 -4160685 - MIR SINE MIR -141 121 58 265 317 39 10 chr9 138112114 138112218 -4159226 + MIR SINE MIR 48 154 -108 295 368 15 23 chr9 138112219 138112352 -4159092 + L2 LINE L2 3094 3225 -88 749 40 56 0 chr9 138113362 138113488 -4157956 + GA-rich Low_complexity Low_complexity 2 134 0 274 322 83 15 chr9 138114006 138114211 -4157233 - L2 LINE L2 -809 2505 2287 349 262 107 0 chr9 138115114 138115236 -4156208 + MIR3 SINE MIR 12 146 -62 403 275 81 6 chr9 138116201 138116361 -4155083 - MIR SINE MIR -88 174 3 268 305 105 9 chr9 138116518 138116623 -4154821 + MIR SINE MIR 34 148 -60 233 192 0 82 chr9 138116804 138116877 -4154567 - MER3 DNA MER1_type -4 205 139 1065 95 0 0 chr9 138116877 138117014 -4154430 + AluJb SINE Alu 1 137 -175 2262 113 3 3 chr9 138117014 138117325 -4154119 + AluSx SINE Alu 1 311 -1 2232 106 3 0 chr9 138117434 138117737 -4153707 - AluSp SINE Alu -9 304 1 352 250 62 28 chr9 138119365 138119509 -4151935 - MER117 DNA MER1_type -40 157 9 290 229 84 0 chr9 138120989 138121072 -4150372 + MER63A DNA MER1_type 8 97 0 404 223 74 29 chr9 138121438 138121587 -4149857 - MIR SINE MIR -62 146 30 419 142 14 54 chr9 138122424 138122572 -4148872 + CT-rich Low_complexity Low_complexity 2 143 0 1932 78 118 0 chr9 138123151 138123422 -4148022 - AluSq SINE Alu -10 303 1 377 271 40 60 chr9 138123472 138123623 -4147821 - L1ME4a LINE L1 -15 6106 5959 188 302 127 48 chr9 138123739 138123865 -4147579 - MIR3 SINE MIR -10 198 63 671 109 11 65 chr9 138124232 138124416 -4147028 + (TCTCCC)n Simple_repeat Simple_repeat 5 178 0 2369 65 0 7 chr9 138125143 138125436 -4146008 + AluSg SINE Alu 16 306 -4 1052 265 92 52 chr9 138127048 138127493 -4143951 - MLT1C LTR MaLR -4 463 1 3725 214 28 33 chr9 138129658 138130139 -4141305 + L1MB2 LINE L1 4826 5308 -863 2076 129 0 23 chr9 138130139 138130442 -4141002 + AluSx SINE Alu 1 296 -16 3725 214 28 33 chr9 138130442 138130887 -4140557 + L1MB2 LINE L1 5308 5759 -412 1809 158 10 10 chr9 138130887 138131198 -4140246 + AluJo SINE Alu 1 311 -1 3725 214 28 33 chr9 138131198 138131556 -4139888 + L1MB2 LINE L1 5759 6117 -54 343 269 6 62 chr9 138131738 138131898 -4139546 + L1MEd LINE L1 1107 1257 -4862 2025 124 0 0 chr9 138131937 138132220 -4139224 + AluSx SINE Alu 3 285 -27 3106 210 52 5 chr9 138133340 138134012 -4137432 + MER39 LTR ERV1 4 707 0 282 250 125 11 chr9 138135223 138135311 -4136133 - MIR3 SINE MIR -5 203 106 775 235 75 0 chr9 138139086 138139286 -4132158 + MER20 DNA MER1_type 5 219 0 259 356 0 11 chr9 138139304 138139394 -4132050 + MIR SINE MIR 173 261 -1 228 290 24 17 chr9 138139962 138140065 -4131379 - MIR3 SINE MIR -50 158 80 366 282 157 24 chr9 138141262 138141556 -4129888 + L2 LINE L2 2921 3253 -19 1683 176 6 31 chr9 138142209 138142528 -4128916 - AluJo SINE Alu -1 311 1 511 204 178 6 chr9 138142529 138142686 -4128758 - MER3 DNA MER1_type -21 188 5 419 297 234 9 chr9 138143387 138143760 -4127684 + L2 LINE L2 2581 3033 -280 257 189 38 0 chr9 138144121 138144174 -4127270 + C-rich Low_complexity Low_complexity 1 55 0 559 215 25 8 chr9 138144483 138144604 -4126840 + MIR SINE MIR 62 184 -78 181 304 37 89 chr9 138144652 138144787 -4126657 + L2 LINE L2 2625 2752 -562 287 289 0 13 chr9 138145833 138145909 -4125535 + MIR SINE MIR 107 181 -81 432 0 0 0 chr9 138146118 138146166 -4125278 + (CA)n Simple_repeat Simple_repeat 2 49 0 225 291 13 25 chr9 138146983 138147062 -4124382 - MIR SINE MIR -79 183 106 190 341 149 15 chr9 138147092 138147253 -4124191 - MIR SINE MIR -62 146 16 505 289 86 52 chr9 138147810 138148222 -4123222 + L2 LINE L2 7 3292 -21 400 298 219 0 chr9 138148570 138148798 -4122646 + L3 LINE CR1 1277 1554 -23 203 352 44 0 chr9 138149640 138149731 -4121713 + L2 LINE L2 3174 3268 -4 205 298 20 0 chr9 138149738 138149892 -4121552 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 * 224 299 31 0 chr9 138149834 138149931 -4121513 + (TGGG)n Simple_repeat Simple_repeat 4 103 0 1207 213 40 70 chr9 138149958 138150118 -4121326 + MLT1B LTR MaLR 1 164 -226 2121 99 0 0 chr9 138150118 138150419 -4121025 + AluSx SINE Alu 8 312 0 1207 213 40 70 chr9 138150419 138150657 -4120787 + MLT1B LTR MaLR 164 387 -3 198 0 0 0 chr9 138150680 138150702 -4120742 + (TGGG)n Simple_repeat Simple_repeat 3 24 0 428 170 9 62 chr9 138150725 138150837 -4120607 + MER53 DNA DNA 84 189 0 229 224 0 45 chr9 138150927 138150994 -4120450 + GA-rich Low_complexity Low_complexity 4 67 0 8524 212 55 25 chr9 138151474 138154022 -4117422 + L1MB8 LINE L1 2681 5303 -843 1110 61 0 0 chr9 138154022 138154154 -4117290 + AluSp SINE Alu 1 132 -181 1939 87 3 84 chr9 138154156 138154488 -4116956 + AluSp SINE Alu 1 307 0 3444 197 40 41 chr9 138154489 138155002 -4116442 + L1MB8 LINE L1 5302 5815 -363 2155 118 3 3 chr9 138155002 138155308 -4116136 + AluSx SINE Alu 1 306 -6 3444 197 40 41 chr9 138155308 138155666 -4115778 + L1MB8 LINE L1 5815 6172 -6 300 53 0 0 chr9 138155673 138155711 -4115733 + (CA)n Simple_repeat Simple_repeat 1 38 0 636 251 6 39 chr9 138156083 138156262 -4115182 - MER63A DNA MER1_type -35 175 3 328 194 167 28 chr9 138156802 138156910 -4114534 - MER45A DNA AcHobo 0 178 56 416 194 60 67 chr9 138158394 138158528 -4112916 - MIR SINE MIR -117 145 13 1018 246 116 9 chr9 138160581 138160926 -4110518 + MLT1B LTR MaLR 1 382 -8 2114 229 27 0 chr9 138160933 138161445 -4109999 + L1MB5 LINE L1 5613 6138 -36 282 366 24 8 chr9 138162892 138163015 -4108429 + L2 LINE L2 3183 3307 -6 238 391 31 0 chr9 138164597 138164725 -4106719 - MIR SINE MIR -70 192 61 320 309 93 0 chr9 138165018 138165171 -4106273 - MIR SINE MIR -34 228 55 220 195 0 0 chr9 138166065 138166106 -4105338 - MIR SINE MIR -117 145 105 236 339 146 8 chr9 138166184 138166314 -4105130 + MIR3 SINE MIR 44 191 -17 274 290 164 34 chr9 138168265 138168472 -4102972 + L2 LINE L2 3038 3271 -1 464 248 57 28 chr9 138168573 138168714 -4102730 + MIR SINE MIR 31 175 -87 226 304 87 9 chr9 138168724 138168839 -4102605 - L2 LINE L2 -30 3283 3160 1638 154 14 3 chr9 138169349 138169634 -4101810 + AluJo SINE Alu 1 288 -24 203 152 0 0 chr9 138170172 138170205 -4101239 + GA-rich Low_complexity Low_complexity 2 34 0 660 291 93 45 chr9 138172651 138172918 -4098526 + L2 LINE L2 2874 3127 -186 210 71 0 0 chr9 138172918 138172946 -4098498 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 2130 94 0 0 chr9 138172949 138173224 -4098220 - AluSx SINE Alu -37 275 1 660 291 93 45 chr9 138173224 138173372 -4098072 + L2 LINE L2 3128 3313 0 261 271 0 0 chr9 138174124 138174183 -4097261 + GA-rich Low_complexity Low_complexity 4 62 0 2215 90 3 0 chr9 138174682 138174992 -4096452 + AluY SINE Alu 1 311 0 2165 108 0 3 chr9 138174997 138175293 -4096151 + AluSq SINE Alu 1 295 -18 2513 97 28 17 chr9 138175334 138175694 -4095750 - THE1B LTR MaLR 0 364 1 673 268 48 43 chr9 138175707 138176102 -4095342 + HAL1 LINE L1 1026 1422 -1085 738 270 17 12 chr9 138176128 138176369 -4095075 + HAL1 LINE L1 1511 1752 -755 5731 200 36 49 chr9 138176601 138176686 -4094758 + L1MB8 LINE L1 3713 3798 -2380 1946 132 3 3 chr9 138176686 138177002 -4094442 + AluSx SINE Alu 1 316 0 5731 200 36 49 chr9 138177002 138177520 -4093924 + L1MB8 LINE L1 3798 4321 -1857 1853 156 54 0 chr9 138177520 138177815 -4093629 - AluSx SINE Alu -1 311 1 5731 200 36 49 chr9 138177815 138178338 -4093106 + L1MB8 LINE L1 4321 4849 -1329 2225 98 0 3 chr9 138178338 138178644 -4092800 + AluY SINE Alu 2 306 -5 5731 200 36 49 chr9 138178644 138179522 -4091922 + L1MB8 LINE L1 4849 5678 -500 1340 145 40 9 chr9 138179522 138179750 -4091694 - MER46A DNA MER2_type -1 235 1 5731 200 36 49 chr9 138179750 138180125 -4091319 + L1MB8 LINE L1 5678 6056 -122 409 367 24 12 chr9 138180138 138180247 -4091197 + HAL1 LINE L1 2000 2113 -394 1990 133 6 13 chr9 138180247 138180562 -4090882 + AluSq SINE Alu 1 313 0 409 367 24 12 chr9 138180562 138180621 -4090823 + HAL1 LINE L1 2113 2170 -337 1969 108 22 0 chr9 138180952 138181287 -4090157 + AluJo SINE Alu 1 341 0 299 333 154 10 chr9 138181721 138181916 -4089528 - MIR SINE MIR -4 258 36 190 254 56 0 chr9 138182029 138182100 -4089344 - MIR SINE MIR -89 119 45 234 309 127 8 chr9 138183023 138183149 -4088295 - MIR3 SINE MIR -63 145 5 233 361 88 44 chr9 138183386 138183635 -4087809 + L2 LINE L2 3002 3261 -11 357 281 10 7 chr9 138183656 138184067 -4087377 + (TGGA)n Simple_repeat Simple_repeat 1 412 0 394 280 72 19 chr9 138184443 138184604 -4086840 - MIR SINE MIR -56 152 34 484 311 178 27 chr9 138185358 138185568 -4085876 + L1ME4a LINE L1 5832 6079 -42 2272 87 0 0 chr9 138185568 138185868 -4085576 + AluY SINE Alu 1 300 -11 484 311 178 27 chr9 138185868 138185882 -4085562 + L1ME4a LINE L1 6079 6090 -31 197 187 69 0 chr9 138186011 138186080 -4085364 - MIR SINE MIR -87 121 73 238 200 319 92 chr9 138186516 138186701 -4084743 + MIR SINE MIR 8 234 -28 247 288 0 0 chr9 138186935 138187001 -4084443 - MIR SINE MIR -98 110 45 229 267 273 19 chr9 138187709 138187870 -4083574 - MIR SINE MIR -12 250 49 618 244 6 13 chr9 138188033 138188189 -4083255 - MER63A DNA MER1_type 0 210 56 210 357 31 0 chr9 138188446 138188544 -4082900 - L3 LINE CR1 -227 1350 1250 1152 60 0 0 chr9 138189202 138189351 -4082093 + (TTCA)n Simple_repeat Simple_repeat 2 150 0 3441 123 22 67 chr9 138190366 138190630 -4080814 + LTR43 LTR ERV1 2 276 -326 2313 86 3 0 chr9 138190630 138190931 -4080513 + AluSp SINE Alu 1 302 -11 3441 123 22 67 chr9 138190931 138191240 -4080204 + LTR43 LTR ERV1 276 547 -55 2227 106 0 7 chr9 138191240 138191568 -4079876 - AluSx SINE Alu 0 312 1 3441 123 22 67 chr9 138191568 138191620 -4079824 + LTR43 LTR ERV1 547 600 -2 264 343 0 19 chr9 138191838 138191946 -4079498 - MIR SINE MIR -101 161 56 194 296 93 46 chr9 138193589 138193697 -4077747 - L3 LINE CR1 -47 1530 1418 320 289 60 80 chr9 138194257 138194458 -4076986 - L2 LINE L2 -17 3255 3059 222 244 26 90 chr9 138195070 138195148 -4076296 + MIR3 SINE MIR 82 154 -54 907 124 26 57 chr9 138195262 138195330 -4076114 - L1 LINE L1 -2331 3815 3746 2158 94 0 7 chr9 138195330 138195627 -4075817 - AluSx SINE Alu -17 295 1 907 124 26 57 chr9 138195627 138195751 -4075693 - L1 LINE L1 -2400 3746 3629 231 308 211 0 chr9 138196226 138196330 -4075114 - MIR SINE MIR -19 243 118 2185 94 7 13 chr9 138196902 138197209 -4074235 + AluY SINE Alu 1 305 -6 5670 214 79 44 chr9 138198193 138198577 -4072867 - L1MEd LINE L1 -2331 3798 3429 2073 108 23 7 chr9 138198577 138198884 -4072560 - AluSx SINE Alu 0 312 1 5670 214 79 44 chr9 138198884 138199447 -4071997 - L1MEd LINE L1 -2700 3429 2887 7676 49 4 8 chr9 138199447 138200401 -4071043 + SVA Other Other 437 1386 0 5670 214 79 44 chr9 138200401 138200797 -4070647 - L1MEd LINE L1 -3242 2887 2506 180 0 0 0 chr9 138200797 138200817 -4070627 + (TA)n Simple_repeat Simple_repeat 1 20 0 5670 214 79 44 chr9 138200817 138200855 -4070589 - L1MEd LINE L1 -3623 2506 2471 2183 89 0 7 chr9 138200855 138201137 -4070307 - AluSg SINE Alu -30 280 1 5670 214 79 44 chr9 138201137 138201867 -4069577 - L1MEd LINE L1 -3658 2471 1548 1128 256 113 27 chr9 138201867 138202203 -4069241 + MLT1A1 LTR MaLR 1 365 0 5670 214 79 44 chr9 138202203 138202583 -4068861 - L1MEd LINE L1 -4581 1548 1183 1358 77 26 0 chr9 138202604 138202798 -4068646 - L1MA1 LINE L1 0 6302 6104 2411 168 17 60 chr9 138202798 138203037 -4068407 - L1 LINE L1 -1956 5609 5361 2462 80 0 0 chr9 138203037 138203348 -4068096 - AluY SINE Alu 0 311 1 2411 168 17 60 chr9 138203348 138203711 -4067733 - L1 LINE L1 -2204 5361 5033 * 17803 123 50 14 chr9 138203703 138206943 -4064501 - L1 LINE L1 -3712 3853 492 472 234 164 97 chr9 138206955 138207181 -4064263 - L1MEd LINE L1 -4935 1184 944 500 352 99 30 chr9 138207721 138208025 -4063419 - L1MEd LINE L1 -5284 835 511 2084 179 39 20 chr9 138208068 138208515 -4062929 - MLT1C LTR MaLR -13 613 1 1535 217 46 49 chr9 138208624 138209034 -4062410 + LTR2 LTR ERV1 41 449 0 1433 194 75 68 chr9 138209454 138209950 -4061494 + MLT1D LTR MaLR 7 505 0 688 231 58 9 chr9 138210248 138210537 -4060907 + MER54A LTR ERVL 10 502 -344 899 185 4 0 chr9 138210545 138210797 -4060647 + GA-rich Low_complexity Low_complexity 1 253 0 1678 185 54 51 chr9 138210810 138211134 -4060310 + MER54A LTR ERVL 473 800 -101 2260 103 3 0 chr9 138211134 138211445 -4059999 + AluSx SINE Alu 1 312 0 1678 185 54 51 chr9 138211445 138211548 -4059896 + MER54A LTR ERVL 800 901 0 24 0 0 0 chr9 138211881 138211905 -4059539 + AT_rich Low_complexity Low_complexity 1 24 0 2286 88 0 0 chr9 138212072 138212369 -4059075 + AluSg SINE Alu 1 297 -13 2289 92 3 0 chr9 138212628 138212934 -4058510 - AluSx SINE Alu -5 307 1 405 249 50 100 chr9 138212936 138213197 -4058247 - HAL1b LINE L1 -771 577 330 371 347 133 21 chr9 138213344 138213675 -4057769 - L1MEd LINE L1 -5742 377 10 1852 174 0 16 chr9 138213817 138214128 -4057316 + AluJo SINE Alu 1 306 -6 223 244 0 0 chr9 138214187 138214232 -4057212 + GA-rich Low_complexity Low_complexity 3 47 0 299 232 103 8 chr9 138214430 138214648 -4056796 + MLT1B LTR MaLR 66 356 -34 234 151 57 38 chr9 138214685 138214791 -4056653 + (CGGGG)n Simple_repeat Simple_repeat 1 108 0 359 174 0 46 chr9 138214801 138214910 -4056534 + GA-rich Low_complexity Low_complexity 1 104 0 231 103 0 0 chr9 138215213 138215252 -4056192 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1391 160 14 69 chr9 138215257 138215545 -4055899 - AluJo SINE Alu -34 278 7 205 172 0 47 chr9 138216127 138216191 -4055253 + A-rich Low_complexity Low_complexity 1 61 0 201 39 0 0 chr9 138218093 138218119 -4053325 + (TG)n Simple_repeat Simple_repeat 2 27 0 523 307 63 22 chr9 138218475 138218996 -4052448 + L1MEc LINE L1 1029 1518 -4908 297 207 37 24 chr9 138218968 138219050 -4052394 + L1MC4 LINE L1 7067 7149 -1173 * 2529 233 107 18 chr9 138219034 138219914 -4051530 + L1MC4 LINE L1 7080 8037 -5 280 289 42 21 chr9 138219943 138220133 -4051311 + L1MEc LINE L1 1835 2028 -4579 930 103 0 32 chr9 138220162 138220294 -4051150 - L1P2 LINE L1 -532 5622 5494 3394 49 40 13 chr9 138220294 138220714 -4050730 + L1PA5 LINE L1 5691 6134 -20 285 51 0 0 chr9 138220714 138220753 -4050691 + (TA)n Simple_repeat Simple_repeat 2 40 0 3394 49 40 13 chr9 138220753 138220775 -4050669 + L1PA5 LINE L1 6134 6154 0 617 287 124 29 chr9 138220775 138221356 -4050088 + L1MEc LINE L1 2096 2731 -3876 930 103 0 32 chr9 138220775 138220797 -4050647 - L1P2 LINE L1 -660 5494 5473 180 394 21 11 chr9 138221433 138221527 -4049917 - MER5A DNA MER1_type -94 95 1 293 270 141 27 chr9 138222118 138222312 -4049132 + MIR SINE MIR 15 226 -36 196 74 0 0 chr9 138223738 138223765 -4047679 + L2 LINE L2 3225 3251 -21 360 397 49 0 chr9 138224641 138224825 -4046619 + L1ME4a LINE L1 5623 5815 -306 2248 117 0 0 chr9 138225023 138225330 -4046114 - AluSx SINE Alu -5 307 1 335 322 101 10 chr9 138226365 138226564 -4044880 + L2 LINE L2 2830 3046 -267 392 206 54 0 chr9 138226599 138226691 -4044753 + L1MEc LINE L1 3946 4042 -2384 511 273 13 45 chr9 138226702 138226856 -4044588 - Tigger3b DNA MER2_type 0 1231 1083 3407 150 281 11 chr9 138227131 138228023 -4043421 - Tigger3b DNA MER2_type -98 1133 1 406 239 22 0 chr9 138228043 138228135 -4043309 + L1MEc LINE L1 4048 4141 -2285 377 314 0 42 chr9 138230511 138230629 -4040815 - MIR3 SINE MIR -26 182 70 183 200 0 0 chr9 138234154 138234194 -4037250 + L2 LINE L2 3028 3067 -205 * 186 317 40 30 chr9 138234177 138234278 -4037166 - L2 LINE L2 -25 3288 3187 241 323 133 6 chr9 138234941 138235099 -4036345 + MER117 DNA MER1_type 3 180 -17 21 0 0 0 chr9 138236062 138236083 -4035361 + GC_rich Low_complexity Low_complexity 1 21 0 301 248 85 39 chr9 138236097 138236250 -4035194 + L1ME4a LINE L1 5959 6118 -3 203 156 0 0 chr9 138237006 138237038 -4034406 + (TG)n Simple_repeat Simple_repeat 1 32 0 1714 168 27 0 chr9 138237845 138238137 -4033307 - AluJb SINE Alu -11 301 2 261 346 15 8 chr9 138238606 138238736 -4032708 + L1ME2 LINE L1 6012 6142 -22 210 307 23 23 chr9 138240113 138240201 -4031243 + (CGTG)n Simple_repeat Simple_repeat 3 90 0 392 298 13 38 chr9 138240788 138240946 -4030498 + GA-rich Low_complexity Low_complexity 1 154 0 302 177 43 71 chr9 138241697 138241838 -4029606 + (CCCCAG)n Simple_repeat Simple_repeat 4 140 0 230 304 48 90 chr9 138242523 138242835 -4028609 + L2 LINE L2 2928 3226 -46 2055 125 10 0 chr9 138244131 138244435 -4027009 - AluSx SINE Alu -5 307 1 972 239 5 18 chr9 138244859 138245077 -4026367 + MER20 DNA MER1_type 3 217 -2 194 105 26 0 chr9 138245473 138245511 -4025933 + C-rich Low_complexity Low_complexity 2 40 0 435 175 27 49 chr9 138245987 138246170 -4025274 + (TG)n Simple_repeat Simple_repeat 1 179 0 231 159 18 35 chr9 138246265 138246378 -4025066 + (TG)n Simple_repeat Simple_repeat 1 111 0 421 213 16 33 chr9 138246415 138246598 -4024846 + (TG)n Simple_repeat Simple_repeat 1 180 0 242 344 109 0 chr9 138246746 138246874 -4024570 - MIR3 SINE MIR -58 150 9 181 289 66 53 chr9 138247555 138247631 -4023813 + L2 LINE L2 3196 3272 0 369 353 33 7 chr9 138247768 138247921 -4023523 + L3 LINE CR1 1415 1571 -6 209 261 62 0 chr9 138248707 138248772 -4022672 - L2 LINE L2 -31 3282 3214 213 204 0 0 chr9 138249112 138249156 -4022288 - L2 LINE L2 -559 2755 2712 189 0 0 0 chr9 138249479 138249500 -4021944 + (CCCTG)n Simple_repeat Simple_repeat 3 23 0 201 274 0 0 chr9 138253991 138254042 -4017402 - MIR SINE MIR -103 159 109 209 374 40 0 chr9 138255306 138255405 -4016039 - MIR SINE MIR -84 124 22 543 200 172 69 chr9 138255600 138255960 -4015484 + MLT1C LTR MaLR 51 447 -20 420 216 0 0 chr9 138256213 138256315 -4015129 + (CA)n Simple_repeat Simple_repeat 2 103 0 206 286 48 0 chr9 138256848 138256911 -4014533 + MIR3 SINE MIR 112 177 -31 283 292 34 11 chr9 138257582 138257671 -4013773 + L3 LINE CR1 986 1076 -501 183 281 47 16 chr9 138258038 138258102 -4013342 + L2 LINE L2 3228 3293 -20 356 270 108 27 chr9 138259160 138259308 -4012136 + MER5B DNA MER1_type 18 177 -1 201 108 0 54 chr9 138260476 138260513 -4010931 + (CCCCCA)n Simple_repeat Simple_repeat 3 37 0 318 259 36 18 chr9 138263273 138263385 -4008059 - MIR SINE MIR -59 149 36 1848 251 61 63 chr9 138269330 138270543 -4000901 - L1ME2 LINE L1 -68 6030 4825 1078 144 0 12 chr9 138270545 138270718 -4000726 + FRAM SINE Alu 1 170 -6 1349 243 51 2 chr9 138270723 138271134 -4000310 - L1ME2 LINE L1 -1259 4821 4391 322 285 28 56 chr9 138271150 138271329 -4000115 - L1ME2 LINE L1 -4941 1139 966 899 106 0 2 chr9 138271330 138271594 -3999850 + AluSq SINE Alu 1 309 -4 690 0 117 0 chr9 138271595 138271833 -3999611 - L1ME2 LINE L1 -5091 1011 746 2579 209 27 45 chr9 138271833 138272042 -3999402 + MLT2B3 LTR ERVL 1 212 -342 2310 80 0 7 chr9 138272042 138272344 -3999100 + AluY SINE Alu 1 300 -11 2579 209 27 45 chr9 138272344 138272695 -3998749 + MLT2B3 LTR ERVL 212 551 -3 690 0 117 0 chr9 138272695 138272813 -3998631 - L1ME2 LINE L1 -5356 746 649 1303 134 0 0 chr9 138272818 138273004 -3998440 - AluSq SINE Alu -127 186 1 2325 42 0 18 chr9 138273137 138273423 -3998021 + AluY SINE Alu 16 296 -15 191 346 102 16 chr9 138273959 138274086 -3997358 - L2 LINE L2 -9 3263 3126 2456 55 6 6 chr9 138274273 138274584 -3996860 - AluY SINE Alu 0 311 1 192 125 0 0 chr9 138276429 138276461 -3994983 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 232 298 128 14 chr9 138276508 138276649 -3994795 - MIR SINE MIR -78 184 28 436 271 43 29 chr9 138276829 138276969 -3994475 + MIR SINE MIR 50 191 -71 263 309 0 31 chr9 138277284 138277381 -3994063 - L2 LINE L2 -203 3069 2976 211 318 55 45 chr9 138277430 138277540 -3993904 - L2 LINE L2 -2 3311 3201 183 206 191 15 chr9 138278481 138278549 -3992895 + L2 LINE L2 2982 3061 -211 277 309 40 10 chr9 138278717 138278838 -3992606 + MIR SINE MIR 26 151 -57 320 353 17 0 chr9 138280068 138280184 -3991260 - MIR3 SINE MIR -1 207 90 195 297 84 58 chr9 138282991 138283146 -3988298 + L2 LINE L2 3018 3176 -96 447 295 32 75 chr9 138283477 138283695 -3987749 + MER33 DNA MER1_type 1 206 -2379 625 199 86 33 chr9 138283695 138283846 -3987598 - FRAM SINE Alu -7 159 1 447 295 32 75 chr9 138283846 138283905 -3987539 + MER33 DNA MER1_type 206 266 -58 268 405 55 0 chr9 138283913 138284076 -3987368 + L2 LINE L2 3100 3271 -1 2000 121 15 27 chr9 138284359 138284697 -3986747 + THE1C LTR MaLR 1 334 -41 2392 86 0 6 chr9 138285209 138285524 -3985920 + AluSq SINE Alu 1 313 0 616 304 47 5 chr9 138285870 138286084 -3985360 + MIR SINE MIR 22 244 -18 183 281 88 0 chr9 138286510 138286567 -3984877 + MIR3 SINE MIR 109 170 -38 2146 89 0 24 chr9 138286610 138286903 -3984541 - AluSq SINE Alu -13 300 15 329 237 83 5 chr9 138289133 138289301 -3982143 + MER34 LTR ERV1 433 540 -2 212 155 52 17 chr9 138289440 138289498 -3981946 + G-rich Low_complexity Low_complexity 3 62 0 271 257 101 9 chr9 138290885 138290994 -3980450 - MER117 DNA MER1_type -18 179 61 485 318 38 13 chr9 138291054 138291227 -3980217 + MIR SINE MIR 5 183 -65 2361 79 0 9 chr9 138291469 138291784 -3979660 + AluSx SINE Alu 1 312 0 197 333 169 0 chr9 138292172 138292355 -3979089 + L2 LINE L2 2855 3068 -204 419 226 11 17 chr9 138292393 138292570 -3978874 + (TGGA)n Simple_repeat Simple_repeat 4 179 0 501 313 0 11 chr9 138292583 138292765 -3978679 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 2248 88 3 3 chr9 138292842 138293139 -3978305 - AluSg SINE Alu -13 297 1 240 242 189 13 chr9 138295080 138295198 -3976246 + MIR SINE MIR 17 173 -35 294 230 27 14 chr9 138295868 138295942 -3975502 + MER81 DNA DNA 8 82 -32 811 152 15 8 chr9 138296763 138296895 -3974549 - FLAM_C SINE Alu -10 133 1 299 243 39 68 chr9 138299045 138299148 -3972296 - MER117 DNA MER1_type 0 197 98 317 261 37 0 chr9 138299478 138299625 -3971819 - MIR SINE MIR -77 131 26 388 363 38 0 chr9 138301042 138301202 -3970242 + MIR SINE MIR 57 222 -40 2541 45 0 10 chr9 138301386 138301694 -3969750 + AluY SINE Alu 1 305 -6 1315 210 93 66 chr9 138302926 138303378 -3968066 - MLT1C LTR MaLR 0 467 4 306 328 66 0 chr9 138303533 138303655 -3967789 - MIR SINE MIR -117 145 16 276 231 65 0 chr9 138303939 138304011 -3967433 + MIR SINE MIR 84 150 -58 262 253 76 0 chr9 138304612 138304691 -3966753 - MIR SINE MIR -70 192 108 337 289 156 7 chr9 138304731 138304866 -3966578 - MIR SINE MIR -28 234 80 1164 165 2 8 chr9 138305051 138305528 -3965916 + (TGGA)n Simple_repeat Simple_repeat 1 474 0 529 320 6 0 chr9 138305548 138305726 -3965718 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 229 322 0 23 chr9 138305752 138305839 -3965605 + GA-rich Low_complexity Low_complexity 2 86 0 184 387 84 0 chr9 138306312 138306431 -3965013 - MIR SINE MIR -5 257 129 485 316 17 0 chr9 138307392 138307566 -3963878 + (CA)n Simple_repeat Simple_repeat 1 177 0 348 287 0 0 chr9 138307599 138307756 -3963688 + (CA)n Simple_repeat Simple_repeat 1 157 0 366 331 129 0 chr9 138308717 138308895 -3962549 + L3 LINE CR1 1271 1471 -106 1723 215 67 0 chr9 138309251 138309697 -3961747 + L1MB5 LINE L1 5699 6174 0 828 189 171 36 chr9 138309969 138310244 -3961200 - MLT1D LTR MaLR -18 487 176 2035 212 96 43 chr9 138311409 138311984 -3959460 + MER77 LTR ERV1 1 605 0 290 312 124 4 chr9 138312007 138312208 -3959236 - MIR SINE MIR -14 248 24 231 61 0 0 chr9 138313011 138313044 -3958400 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2311 81 0 0 chr9 138313411 138313706 -3957738 + AluY SINE Alu 1 295 -16 365 180 26 8 chr9 138315233 138315330 -3956114 - MIR SINE MIR -65 143 47 210 336 8 15 chr9 138315864 138315995 -3955449 + (TG)n Simple_repeat Simple_repeat 1 130 0 201 304 109 43 chr9 138317957 138318095 -3953349 - MER5A DNA MER1_type -24 165 19 180 369 0 0 chr9 138318274 138318339 -3953105 + L2 LINE L2 3152 3216 -56 422 292 38 19 chr9 138318748 138318957 -3952487 - L1MEd LINE L1 -5012 1107 895 223 257 0 14 chr9 138318968 138319038 -3952406 + T-rich Low_complexity Low_complexity 4 72 0 2253 102 0 7 chr9 138319912 138320215 -3951229 + AluSx SINE Alu 1 301 -11 260 346 99 12 chr9 138320287 138320449 -3950995 + MIR SINE MIR 2 177 -85 283 272 241 6 chr9 138321761 138321919 -3949525 + MIR SINE MIR 39 233 -29 499 134 196 10 chr9 138322284 138322381 -3949063 + AluJb SINE Alu 1 115 -197 1949 128 34 3 chr9 138322382 138322678 -3948766 - AluSq SINE Alu -8 305 1 1789 186 0 13 chr9 138322714 138323026 -3948418 + AluJo SINE Alu 1 308 -4 551 258 0 6 chr9 138324072 138324250 -3947194 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 218 135 54 0 chr9 138324252 138324289 -3947155 + (TGGG)n Simple_repeat Simple_repeat 3 41 0 795 216 0 0 chr9 138324291 138324655 -3946789 + (TGGA)n Simple_repeat Simple_repeat 1 364 0 1133 133 8 0 chr9 138324667 138324926 -3946518 + (TGGA)n Simple_repeat Simple_repeat 1 261 0 334 309 58 7 chr9 138325084 138325223 -3946221 - MIR SINE MIR -82 180 35 1928 114 0 0 chr9 138326235 138326497 -3944947 + AluSx SINE Alu 11 272 -40 307 250 155 26 chr9 138326635 138326751 -3944693 + MIR SINE MIR 16 146 -62 336 328 23 35 chr9 138327145 138327319 -3944125 - MIR3 SINE MIR -28 180 9 290 295 41 25 chr9 138328291 138328413 -3943031 - MIR3 SINE MIR -20 188 65 1656 256 40 4 chr9 138329158 138329655 -3941789 + MLT2B1 LTR ERVL 6 520 0 284 219 73 0 chr9 138330876 138330958 -3940486 - MIR SINE MIR -70 192 105 203 279 0 0 chr9 138332633 138332676 -3938768 - L2 LINE L2 -16 3297 3255 698 256 108 8 chr9 138333949 138334207 -3937237 + L1MC3 LINE L1 7483 7766 -19 254 229 101 37 chr9 138335489 138335598 -3935846 - L2 LINE L2 -34 3238 3123 627 241 91 21 chr9 138335795 138336110 -3935334 + MLT1C LTR MaLR 38 372 -18 250 189 57 0 chr9 138337084 138337137 -3934307 - L3 LINE CR1 -107 1470 1415 1958 109 6 58 chr9 138337248 138337559 -3933885 + AluSc SINE Alu 1 295 -14 241 309 31 0 chr9 138337958 138338055 -3933389 + L1ME3A LINE L1 6066 6165 -5 196 244 139 12 chr9 138339030 138339116 -3932328 - MER5A DNA MER1_type -61 128 32 280 213 163 12 chr9 138339778 138339858 -3931586 - MIR SINE MIR -150 112 21 316 247 35 0 chr9 138340894 138340979 -3930465 - L1MB3 LINE L1 -29 6154 6067 202 150 0 50 chr9 138341160 138341200 -3930244 + (CCCCCG)n Simple_repeat Simple_repeat 2 39 0 1112 209 34 74 chr9 138341434 138341784 -3929660 + L1MB3 LINE L1 5848 6183 0 614 239 75 18 chr9 138343986 138344212 -3927232 + MLT1J LTR MaLR 99 337 -174 291 189 11 49 chr9 138344648 138344833 -3926611 + GA-rich Low_complexity Low_complexity 2 179 0 281 139 17 72 chr9 138344898 138345078 -3926366 + GA-rich Low_complexity Low_complexity 3 172 0 334 126 46 46 chr9 138345133 138345308 -3926136 + GA-rich Low_complexity Low_complexity 1 175 0 366 273 0 50 chr9 138345406 138345545 -3925899 + G-rich Low_complexity Low_complexity 6 137 0 205 274 19 70 chr9 138345503 138345660 -3925784 + (GGGTG)n Simple_repeat Simple_repeat 3 151 0 * 212 163 0 61 chr9 138345612 138345661 -3925783 + G-rich Low_complexity Low_complexity 5 50 0 221 139 23 0 chr9 138346732 138346775 -3924669 + GA-rich Low_complexity Low_complexity 4 47 0 324 289 106 34 chr9 138347299 138347507 -3923937 - MIR SINE MIR -18 244 22 333 364 73 49 chr9 138348589 138348836 -3922608 + HAL1 LINE L1 2255 2507 0 1429 228 89 19 chr9 138348839 138349268 -3922176 + L1MB7 LINE L1 5726 6184 0 1913 14 0 0 chr9 138349370 138349584 -3921860 - SVA Other Other 0 1386 1173 2164 119 3 0 chr9 138349612 138349923 -3921521 + AluSx SINE Alu 1 312 0 2464 42 0 0 chr9 138350255 138350542 -3920902 + AluY SINE Alu 4 290 -21 2115 125 0 16 chr9 138351739 138352052 -3919392 + AluSx SINE Alu 1 308 -4 292 326 33 55 chr9 138352131 138352249 -3919195 - MLT1H1 LTR MaLR -378 177 63 2368 57 7 0 chr9 138352249 138352546 -3918898 - AluY SINE Alu -12 299 1 292 326 33 55 chr9 138352546 138352608 -3918836 - MLT1H1 LTR MaLR -492 63 1 1720 133 3 104 chr9 138352700 138352834 -3918610 + AluJo SINE Alu 1 147 -165 1880 133 20 23 chr9 138352834 138353135 -3918309 - AluSx SINE Alu -12 300 1 1720 133 3 104 chr9 138353135 138353166 -3918278 + AluJo SINE Alu 147 180 -132 2510 68 0 0 chr9 138353166 138353476 -3917968 + AluY SINE Alu 2 311 0 1720 133 3 104 chr9 138353476 138353656 -3917788 + AluJo SINE Alu 180 312 0 1830 131 39 36 chr9 138353754 138354192 -3917252 + MER39B LTR ERV1 84 599 -54 2087 105 0 3 chr9 138354192 138354521 -3916923 - AluSx SINE Alu 0 328 1 1830 131 39 36 chr9 138354521 138354577 -3916867 + MER39B LTR ERV1 599 653 0 362 260 57 0 chr9 138354786 138354945 -3916499 + MLT1H1 LTR MaLR 1 210 -339 251 356 93 8 chr9 138355586 138355704 -3915740 + MIR SINE MIR 104 231 -31 1094 188 12 98 chr9 138356037 138356212 -3915232 + MLT1B LTR MaLR 1 135 -255 2099 123 3 13 chr9 138356212 138356520 -3914924 + AluSq SINE Alu 2 306 -7 1094 188 12 98 chr9 138356520 138356679 -3914765 + MLT1B LTR MaLR 135 306 -84 2322 66 6 28 chr9 138358568 138358886 -3912558 + AluY SINE Alu 1 311 0 2093 111 3 13 chr9 138359179 138359486 -3911958 + AluJb SINE Alu 1 304 -8 352 279 99 0 chr9 138362742 138362853 -3908591 + MIR SINE MIR 22 143 -119 180 300 100 0 chr9 138362924 138362984 -3908460 + MIR SINE MIR 187 252 -10 568 330 86 6 chr9 138363435 138363786 -3907658 + MLT1J LTR MaLR 128 506 -5 275 217 76 76 chr9 138363876 138363953 -3907491 - MIR SINE MIR -63 145 66 2500 43 0 37 chr9 138363953 138364276 -3907168 + AluY SINE Alu 1 311 0 275 217 76 76 chr9 138364276 138364290 -3907154 - MIR SINE MIR -141 67 54 335 319 43 0 chr9 138364692 138364833 -3906611 + MER3 DNA MER1_type 3 149 -60 358 322 7 13 chr9 138364856 138365008 -3906436 - L1MA10 LINE L1 -9 6325 6175 1132 116 0 23 chr9 138365343 138365516 -3905928 - L1PA11 LINE L1 0 6174 6006 978 265 49 3 chr9 138367648 138367935 -3903509 + L1MB5 LINE L1 5601 5900 -274 766 147 34 18 chr9 138368039 138368314 -3903130 + G-rich Low_complexity Low_complexity 1 279 0 339 200 22 49 chr9 138369067 138369252 -3902192 + (CA)n Simple_repeat Simple_repeat 1 180 0 307 250 21 24 chr9 138369289 138369578 -3901866 + (CA)n Simple_repeat Simple_repeat 1 288 0 321 296 41 10 chr9 138370344 138370442 -3901002 + MIR3 SINE MIR 59 159 -49 258 292 45 11 chr9 138371136 138371225 -3900219 - MIR SINE MIR -55 153 62 552 339 48 9 chr9 138371987 138372214 -3899230 - MIR SINE MIR -19 243 8 2193 79 4 0 chr9 138372241 138372558 -3898886 - AluSg SINE Alu 0 318 1 210 118 0 0 chr9 138374778 138374812 -3896632 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 643 186 41 55 chr9 138374842 138374987 -3896457 + FLAM_C SINE Alu 1 143 0 241 204 0 0 chr9 138375113 138375162 -3896282 + L1 LINE L1 5232 5280 -866 2151 199 31 14 chr9 138376047 138376869 -3894575 + L1MB5 LINE L1 4853 5683 -500 6435 52 4 5 chr9 138376869 138377640 -3893804 + L1PA6 LINE L1 5366 6151 -3 1919 125 10 26 chr9 138377663 138377976 -3893468 - AluSx SINE Alu -4 308 1 1586 245 53 0 chr9 138378272 138378689 -3892755 + L1MB5 LINE L1 5711 6149 -25 1930 141 0 3 chr9 138378721 138379004 -3892440 - AluSx SINE Alu -30 282 1 234 0 0 0 chr9 138379487 138379513 -3891931 + (A)n Simple_repeat Simple_repeat 1 26 0 288 255 60 67 chr9 138379605 138379754 -3891690 - MIR3 SINE MIR -36 172 25 325 258 129 38 chr9 138379984 138380193 -3891251 + L2 LINE L2 2828 3055 -217 324 281 201 0 chr9 138380687 138380826 -3890618 - MER117 DNA MER1_type 0 197 31 313 143 0 0 chr9 138380948 138380997 -3890447 + L1 LINE L1 4893 4941 -1205 372 138 0 0 chr9 138381654 138381719 -3889725 + (TG)n Simple_repeat Simple_repeat 1 65 0 222 277 12 48 chr9 138382525 138382608 -3888836 - MIR SINE MIR -87 175 96 237 234 22 60 chr9 138383704 138383888 -3887556 + CT-rich Low_complexity Low_complexity 2 178 0 206 208 19 0 chr9 138384953 138385006 -3886438 + CT-rich Low_complexity Low_complexity 2 55 0 182 341 24 56 chr9 138386793 138386919 -3884525 + L2 LINE L2 3150 3271 -1 1018 97 29 0 chr9 138386927 138387102 -3884342 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1086 94 11 17 chr9 138387122 138387302 -3884142 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1190 92 17 11 chr9 138387317 138387674 -3883770 + (TGGA)n Simple_repeat Simple_repeat 1 360 0 2471 197 58 28 chr9 138387878 138388415 -3883029 + MLT2B3 LTR ERVL 1 553 -1 365 307 104 0 chr9 138389578 138389741 -3881703 - MIR SINE MIR -75 187 8 199 286 83 53 chr9 138389682 138389768 -3881676 + MIR SINE MIR 21 114 -148 * 2014 152 0 0 chr9 138389768 138390071 -3881373 - AluSx SINE Alu -9 303 1 199 286 83 53 chr9 138390071 138390117 -3881327 + MIR SINE MIR 114 157 -105 442 262 18 6 chr9 138390695 138390859 -3880585 + (TG)n Simple_repeat Simple_repeat 1 166 0 185 65 32 0 chr9 138390879 138390910 -3880534 + (TG)n Simple_repeat Simple_repeat 2 33 0 652 162 6 6 chr9 138390929 138391102 -3880342 + (TG)n Simple_repeat Simple_repeat 2 174 0 199 331 79 8 chr9 138392221 138392348 -3879096 - MIR SINE MIR -70 192 57 201 295 58 65 chr9 138392874 138393013 -3878431 - MIR SINE MIR -113 149 12 264 59 0 0 chr9 138394207 138394241 -3877203 + (TG)n Simple_repeat Simple_repeat 2 35 0 1003 207 16 58 chr9 138394241 138394550 -3876894 - L1MC4 LINE L1 -147 7895 7600 591 219 94 47 chr9 138394550 138394658 -3876786 + MER3 DNA MER1_type 6 128 -81 2372 89 0 0 chr9 138394658 138394960 -3876484 + AluSx SINE Alu 1 302 -10 591 219 94 47 chr9 138394960 138395043 -3876401 + MER3 DNA MER1_type 128 206 -3 846 195 70 77 chr9 138395100 138395134 -3876310 + L1MB3 LINE L1 5887 5920 -263 2244 74 0 24 chr9 138395134 138395432 -3876012 - AluSp SINE Alu -22 291 1 846 195 70 77 chr9 138395432 138395695 -3875749 + L1MB3 LINE L1 5920 6182 -1 413 290 37 23 chr9 138395778 138395992 -3875452 + MLT1C LTR MaLR 239 455 -12 248 296 92 0 chr9 138396527 138396625 -3874819 - MIR SINE MIR -107 155 49 247 328 17 52 chr9 138397882 138397998 -3873446 - MIR SINE MIR -70 138 27 469 349 7 0 chr9 138398584 138398730 -3872714 - MIR SINE MIR -115 147 1 257 213 0 0 chr9 138399435 138399482 -3871962 + MIR SINE MIR 98 144 -118 288 333 19 0 chr9 138400417 138400522 -3870922 + L2 LINE L2 3165 3271 -1 213 94 0 0 chr9 138400524 138400556 -3870888 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 259 116 0 23 chr9 138400876 138400919 -3870525 - MIR SINE MIR -113 149 108 2258 88 3 0 chr9 138400950 138401245 -3870199 + AluSq SINE Alu 5 300 -13 1921 135 0 3 chr9 138401335 138401617 -3869827 - AluSx SINE Alu -29 283 3 268 267 0 0 chr9 138405138 138405198 -3866246 + MIR SINE MIR 103 162 -100 214 294 0 0 chr9 138405307 138405358 -3866086 - MIR SINE MIR -62 146 96 1077 263 61 28 chr9 138405363 138405724 -3865720 - MLT1A2 LTR MaLR -1 373 1 543 261 147 49 chr9 138405729 138405850 -3865594 + MLT1D LTR MaLR 1 109 -396 2209 104 0 3 chr9 138405850 138406149 -3865295 + AluSg SINE Alu 1 298 -12 543 261 147 49 chr9 138406149 138406375 -3865069 + MLT1D LTR MaLR 109 382 -123 310 179 2 3 chr9 138406642 138406710 -3864734 + MLT1D LTR MaLR 330 391 -76 316 350 6 17 chr9 138408153 138408330 -3863114 + (TG)n Simple_repeat Simple_repeat 1 175 0 386 317 9 22 chr9 138408873 138409331 -3862113 + C-rich Low_complexity Low_complexity 1 451 0 208 255 0 0 chr9 138409573 138409620 -3861824 + MIR SINE MIR 85 131 -131 222 91 0 0 chr9 138409952 138409985 -3861459 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 217 222 0 0 chr9 138410491 138410536 -3860908 + (CCCA)n Simple_repeat Simple_repeat 3 47 0 180 238 0 24 chr9 138410625 138410667 -3860777 - MIR SINE MIR -109 153 113 8208 44 8 1 chr9 138411278 138412240 -3859204 + LTR5 LTR ERVK 1 969 0 206 62 31 0 chr9 138412286 138412318 -3859126 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 741 266 104 42 chr9 138413111 138413495 -3857949 + MLT1C LTR MaLR 44 451 -16 414 285 32 81 chr9 138417154 138417340 -3854104 - MER104 DNA MER2_type 0 180 4 381 43 0 0 chr9 138417515 138417562 -3853882 + (TA)n Simple_repeat Simple_repeat 2 48 0 1503 158 8 0 chr9 138417570 138417804 -3853640 + AluJb SINE Alu 1 236 -76 336 344 28 14 chr9 138417810 138417953 -3853491 - L1MC4 LINE L1 -1337 6705 6588 7881 164 23 26 chr9 138418006 138418698 -3852746 + L1MA4 LINE L1 3681 4373 -1927 1727 156 13 35 chr9 138418698 138419012 -3852432 + AluSx SINE Alu 1 307 -5 7881 164 23 26 chr9 138419012 138419922 -3851522 + L1MA4 LINE L1 4373 5284 -1016 1887 121 19 23 chr9 138419922 138420229 -3851215 + AluJo SINE Alu 7 312 0 7881 164 23 26 chr9 138420229 138420245 -3851199 + L1MA4 LINE L1 5284 5299 -1001 2120 121 3 3 chr9 138420245 138420550 -3850894 + AluSx SINE Alu 1 305 -7 7881 164 23 26 chr9 138420550 138421143 -3850301 + L1MA4 LINE L1 5299 5906 -394 2176 123 0 0 chr9 138421143 138421451 -3849993 + AluSx SINE Alu 1 308 -4 7881 164 23 26 chr9 138421451 138421813 -3849631 + L1MA4 LINE L1 5906 6267 -33 304 156 13 39 chr9 138421813 138421890 -3849554 + L1MA5 LINE L1 6225 6299 -1 23 0 0 0 chr9 138424500 138424523 -3846921 + AT_rich Low_complexity Low_complexity 1 23 0 182 179 51 0 chr9 138425488 138425527 -3845917 - MIR SINE MIR -142 120 80 235 283 27 12 chr9 138426244 138426346 -3845098 - MIR SINE MIR -62 146 83 250 208 143 0 chr9 138427516 138427593 -3843851 + L2 LINE L2 2958 3045 -227 347 299 27 48 chr9 138428054 138428201 -3843243 - MIR3 SINE MIR -58 150 7 331 272 56 64 chr9 138429039 138429164 -3842280 - MIR SINE MIR -56 152 29 420 244 73 0 chr9 138429244 138429367 -3842077 - ORSL DNA AcHobo -113 162 31 2166 92 0 3 chr9 138429423 138429715 -3841729 + AluSg1 SINE Alu 1 291 -18 368 301 88 13 chr9 138430052 138430291 -3841153 - L1MB5 LINE L1 -71 6103 5847 366 311 81 14 chr9 138430302 138430450 -3840994 - MIR SINE MIR -58 204 47 197 336 56 40 chr9 138434345 138434470 -3836974 + L2 LINE L2 2923 3049 -223 207 393 66 8 chr9 138435054 138435176 -3836268 - MIR SINE MIR -15 247 119 1180 236 7 23 chr9 138436204 138436514 -3834930 + MER58B DNA MER1_type 37 341 0 225 0 0 0 chr9 138437284 138437309 -3834135 + (CACCC)n Simple_repeat Simple_repeat 4 28 0 437 209 33 34 chr9 138437354 138437469 -3833975 - MER106A DNA MER1_type -1 235 175 2173 116 0 7 chr9 138437469 138437771 -3833673 - AluSx SINE Alu -12 300 1 437 209 33 34 chr9 138437771 138437820 -3833624 - MER106A DNA MER1_type -61 175 127 1796 163 3 0 chr9 138437837 138438119 -3833325 + AluJo SINE Alu 9 291 -21 232 290 29 0 chr9 138438130 138438199 -3833245 - MER106B DNA MER1_type -987 72 2 1190 202 0 0 chr9 138438204 138438417 -3833027 + AluSg/x SINE Alu 84 296 -16 501 211 16 0 chr9 138438420 138438543 -3832901 + Charlie5 DNA MER1_type 2461 2585 -27 1680 274 120 60 chr9 138438559 138438722 -3832722 + L1MC4 LINE L1 6613 6765 -1277 351 0 0 0 chr9 138438722 138438761 -3832683 + (TG)n Simple_repeat Simple_repeat 2 40 0 2308 105 0 0 chr9 138438761 138439067 -3832377 - AluSx SINE Alu -6 306 1 1680 274 120 60 chr9 138439067 138440116 -3831328 + L1MC4 LINE L1 6764 7899 -143 216 321 62 36 chr9 138440384 138440481 -3830963 + L2 LINE L2 3153 3255 -17 276 54 36 18 chr9 138440481 138440537 -3830907 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 216 321 62 36 chr9 138440537 138440551 -3830893 + L2 LINE L2 3255 3267 -5 185 296 0 0 chr9 138441415 138441469 -3829975 + L2 LINE L2 3208 3261 -11 1234 149 123 43 chr9 138442127 138442403 -3829041 + AluSg SINE Alu 1 298 -12 2134 101 10 0 chr9 138442415 138442542 -3828902 + AluSg SINE Alu 1 125 -185 2326 93 3 3 chr9 138442542 138442855 -3828589 + AluSp SINE Alu 1 313 0 2134 101 10 0 chr9 138442855 138443023 -3828421 + AluSg SINE Alu 125 299 -11 1221 98 0 0 chr9 138443023 138443186 -3828258 + AluSg/x SINE Alu 137 299 -13 339 327 103 24 chr9 138443461 138443626 -3827818 - MIR SINE MIR -31 231 54 30 89 0 0 chr9 138445059 138445138 -3826306 + GC_rich Low_complexity Low_complexity 1 79 0 22 0 0 0 chr9 138445322 138445344 -3826100 + GC_rich Low_complexity Low_complexity 1 22 0 25 83 0 0 chr9 138445419 138445479 -3825965 + GC_rich Low_complexity Low_complexity 1 60 0 22 56 0 0 chr9 138445519 138445555 -3825889 + GC_rich Low_complexity Low_complexity 1 36 0 27 73 0 0 chr9 138445812 138445867 -3825577 + GC_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr9 138446113 138446138 -3825306 + GC_rich Low_complexity Low_complexity 1 25 0 32 67 0 0 chr9 138446294 138446354 -3825090 + GC_rich Low_complexity Low_complexity 1 60 0 805 183 0 0 chr9 138448307 138448438 -3823006 + FLAM_C SINE Alu 1 131 -2 2039 136 3 0 chr9 138449375 138449676 -3821768 + AluJb SINE Alu 1 302 -10 356 273 125 0 chr9 138450561 138450688 -3820756 - MIR SINE MIR -70 138 34 496 168 22 22 chr9 138451217 138451396 -3820048 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 812 176 7 7 chr9 138451409 138451845 -3819599 + (TCCA)n Simple_repeat Simple_repeat 1 436 0 606 207 0 0 chr9 138451892 138452071 -3819373 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 702 200 11 4 chr9 138452137 138452415 -3819029 + (TCCA)n Simple_repeat Simple_repeat 1 280 0 1005 231 23 15 chr9 138453455 138453715 -3817729 - L1MB7 LINE L1 -117 6067 5806 1263 235 9 6 chr9 138453716 138454035 -3817409 - Charlie5 DNA MER1_type -60 2552 2233 472 160 20 20 chr9 138454037 138454058 -3817386 - Charlie5 DNA MER1_type -2509 115 95 1762 177 0 3 chr9 138454058 138454358 -3817086 + AluJo SINE Alu 1 299 -13 472 160 20 20 chr9 138454358 138454436 -3817008 - Charlie5 DNA MER1_type -2528 96 16 2075 163 74 36 chr9 138454920 138455020 -3816424 + L1MB7 LINE L1 5668 5763 -421 1973 115 22 56 chr9 138455020 138455341 -3816103 + AluSq SINE Alu 1 310 -3 2075 163 74 36 chr9 138455341 138455737 -3815707 + L1MB7 LINE L1 5763 6183 -1 1209 120 0 0 chr9 138456305 138456656 -3814788 + (TCCA)n Simple_repeat Simple_repeat 1 351 0 889 151 9 0 chr9 138456673 138457033 -3814411 + (TCCA)n Simple_repeat Simple_repeat 1 363 0 786 345 60 15 chr9 138458725 138459246 -3812198 + HERV16 LTR ERVL 86 629 -4367 1900 121 59 3 chr9 138459246 138459536 -3811908 + AluSx SINE Alu 1 306 -6 2419 84 0 0 chr9 138459664 138459973 -3811471 - AluSg SINE Alu -1 309 1 1675 169 3 46 chr9 138459973 138460298 -3811146 - AluJb SINE Alu -1 311 1 1007 267 81 21 chr9 138460557 138460992 -3810452 + MLT1C LTR MaLR 6 466 -1 994 195 0 0 chr9 138461263 138461437 -3810007 + AluJb SINE Alu 137 310 -2 396 0 0 0 chr9 138461485 138461529 -3809915 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1867 83 4 0 chr9 138461529 138461770 -3809674 - AluSx SINE Alu -32 280 39 810 216 0 44 chr9 138461788 138461969 -3809475 - AluJb SINE Alu -7 305 133 627 310 9 13 chr9 138462643 138462872 -3808572 - L1M4 LINE L1 -6310 232 5 2047 112 20 7 chr9 138462914 138463209 -3808235 + AluSq SINE Alu 1 299 -14 1345 208 10 14 chr9 138463213 138463502 -3807942 - L1MB7 LINE L1 -7 6177 5890 2380 58 0 3 chr9 138464696 138464988 -3806456 - AluSx SINE Alu -21 291 1 796 206 80 46 chr9 138464989 138465251 -3806193 + L1MB3 LINE L1 5912 6182 -1 413 290 37 23 chr9 138465334 138465548 -3805896 + MLT1C LTR MaLR 239 455 -12 248 296 92 0 chr9 138466083 138466181 -3805263 - MIR SINE MIR -107 155 49 2171 90 14 3 chr9 138466529 138466817 -3804627 - AluSx SINE Alu -21 291 1 346 109 98 0 chr9 138466818 138466910 -3804534 + CT-rich Low_complexity Low_complexity 4 104 0 1706 201 0 10 chr9 138466926 138467240 -3804204 - AluJo SINE Alu -1 311 1 412 301 15 58 chr9 138467419 138467678 -3803766 - L2 LINE L2 -213 3059 2812 326 300 106 0 chr9 138467727 138467857 -3803587 + MIR3 SINE MIR 13 154 -54 320 264 43 36 chr9 138467879 138468019 -3803425 + MER5A DNA MER1_type 13 153 -36 307 288 59 46 chr9 138467895 138468048 -3803396 - MER5B DNA MER1_type -16 162 8 * 946 296 104 13 chr9 138468079 138468454 -3802990 + L2 LINE L2 2899 3307 -6 186 43 0 0 chr9 138468487 138468510 -3802934 + (T)n Simple_repeat Simple_repeat 1 23 0 1024 194 0 39 chr9 138468523 138468729 -3802715 + AluJo SINE Alu 23 220 -92 514 161 58 0 chr9 138468747 138468834 -3802610 + AluSg/x SINE Alu 159 250 -62 1196 163 39 0 chr9 138468834 138469037 -3802407 + AluJo SINE Alu 85 295 -17 1075 71 5 33 chr9 138469041 138469225 -3802219 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1939 136 3 44 chr9 138519634 138519950 -3751494 + AluSq SINE Alu 1 303 -10 937 145 0 0 chr9 138519968 138520099 -3751345 + AluSq/x SINE Alu 1 131 -181 2318 114 0 3 chr9 138520532 138520840 -3750604 + AluSg SINE Alu 1 307 -3 30 59 0 0 chr9 138522738 138522789 -3748655 + GC_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr9 138522835 138522878 -3748566 + GC_rich Low_complexity Low_complexity 1 43 0 30 45 0 0 chr9 138522965 138523009 -3748435 + GC_rich Low_complexity Low_complexity 1 44 0 201 74 0 0 chr9 138523099 138523126 -3748318 + (CCG)n Simple_repeat Simple_repeat 3 29 0 189 0 0 0 chr9 138523173 138523194 -3748250 + (CGG)n Simple_repeat Simple_repeat 2 22 0 57 39 0 0 chr9 138523231 138523309 -3748135 + GC_rich Low_complexity Low_complexity 1 78 0 21 57 0 0 chr9 138523346 138523381 -3748063 + GC_rich Low_complexity Low_complexity 1 35 0 37 39 0 0 chr9 138523476 138523527 -3747917 + GC_rich Low_complexity Low_complexity 1 51 0 181 115 19 19 chr9 138523536 138523588 -3747856 + (CCCCG)n Simple_repeat Simple_repeat 1 52 0 37 39 0 0 chr9 138523601 138523652 -3747792 + GC_rich Low_complexity Low_complexity 1 51 0 23 33 0 0 chr9 138523842 138523872 -3747572 + GC_rich Low_complexity Low_complexity 1 30 0 34 65 0 0 chr9 138523928 138523990 -3747454 + GC_rich Low_complexity Low_complexity 1 62 0 180 241 127 0 chr9 138524142 138524221 -3747223 + MIR3 SINE MIR 104 192 -16 2281 79 0 49 chr9 138524354 138524682 -3746762 - AluSq SINE Alu -1 312 1 283 285 38 12 chr9 138524942 138525085 -3746359 - MIR SINE MIR -71 137 41 220 270 16 0 chr9 138526040 138526103 -3745341 + MIR SINE MIR 97 160 -102 428 171 95 29 chr9 138526250 138526355 -3745089 + L2 LINE L2 3202 3313 0 2028 146 3 9 chr9 138526539 138526875 -3744569 - MER1B DNA MER1_type 0 337 4 510 288 37 6 chr9 138527068 138527231 -3744213 - MIR SINE MIR -5 257 90 2459 87 3 0 chr9 138527376 138527676 -3743768 + AluSp SINE Alu 1 301 -12 1597 154 10 17 chr9 138527925 138528217 -3743227 + AluJo SINE Alu 1 290 -22 318 168 10 139 chr9 138528233 138528290 -3743154 + MIR SINE MIR 108 171 -91 2276 129 0 0 chr9 138528290 138528599 -3742845 + AluSg SINE Alu 2 310 0 2330 100 3 0 chr9 138528602 138528901 -3742543 + AluSp SINE Alu 1 300 -13 318 168 10 139 chr9 138528901 138528940 -3742504 + MIR SINE MIR 173 195 -67 347 259 48 60 chr9 138529021 138529187 -3742257 - L2 LINE L2 -66 3247 3084 323 303 26 32 chr9 138529556 138529711 -3741733 + L1MEd LINE L1 811 964 -5155 1218 120 0 0 chr9 138529712 138529870 -3741574 + AluSg/x SINE Alu 132 289 -21 256 289 21 10 chr9 138529872 138529969 -3741475 + L1MEd LINE L1 977 1074 -5045 1920 167 28 16 chr9 138530005 138530436 -3741008 + L1MB5 LINE L1 922 1357 -5185 250 274 0 0 chr9 138530438 138530500 -3740944 + 5S rRNA rRNA 2 63 -58 10680 63 10 52 chr9 138530517 138531964 -3739480 + SVA Other Other 1 1385 -1 2827 227 50 37 chr9 138531964 138532340 -3739104 + L1MB5 LINE L1 1349 1719 -4927 2306 121 0 9 chr9 138532340 138532655 -3738789 + AluSx SINE Alu 1 312 0 2827 227 50 37 chr9 138532655 138532994 -3738450 + L1MB5 LINE L1 1719 2052 -4594 2360 120 0 0 chr9 138532994 138533303 -3738141 + AluSg SINE Alu 1 309 -1 2827 227 50 37 chr9 138533303 138533665 -3737779 + L1MB5 LINE L1 2052 2550 -4096 2313 103 0 10 chr9 138533665 138533976 -3737468 + AluSx SINE Alu 1 308 -4 2827 227 50 37 chr9 138533976 138534008 -3737436 + L1MB5 LINE L1 2550 2580 -4066 1359 216 17 43 chr9 138535126 138535626 -3735818 + L1MB5 LINE L1 2563 3056 -3588 1594 167 65 20 chr9 138535640 138535933 -3735511 - AluJo SINE Alu 0 312 7 1968 160 16 0 chr9 138535973 138536279 -3735165 - AluSx SINE Alu -1 311 1 1527 119 45 4 chr9 138536281 138536525 -3734919 + MLT1B LTR MaLR 22 275 -115 1312 226 19 7 chr9 138536526 138536796 -3734648 + AluJo SINE Alu 1 273 -39 1319 106 11 0 chr9 138536821 138537009 -3734435 + THE1B LTR MaLR 175 364 0 1018 177 11 0 chr9 138537009 138537195 -3734249 + L1MB5 LINE L1 5266 5453 -1191 2142 142 0 3 chr9 138537197 138537492 -3733952 + AluSx SINE Alu 1 294 -18 721 180 0 16 chr9 138537501 138537629 -3733815 + FLAM_C SINE Alu 2 127 -16 3197 174 21 41 chr9 138537638 138537725 -3733719 + L1MB5 LINE L1 5440 5527 -1145 2548 58 0 26 chr9 138537725 138538038 -3733406 + AluY SINE Alu 1 305 -6 3197 174 21 41 chr9 138538038 138538050 -3733394 + L1MB5 LINE L1 5527 5538 -1134 2399 109 0 0 chr9 138538050 138538353 -3733091 + AluSg SINE Alu 1 303 -7 3197 174 21 41 chr9 138538353 138539228 -3732216 + L1MB5 LINE L1 5538 6471 -201 1168 189 10 0 chr9 138539228 138539424 -3732020 + AluJb SINE Alu 11 208 -104 817 183 15 45 chr9 138539424 138539626 -3731818 + L1MB5 LINE L1 6469 6664 -8 1955 163 7 0 chr9 138539642 138539937 -3731507 - AluJb SINE Alu -15 297 1 2548 76 0 0 chr9 138540171 138540475 -3730969 + AluY SINE Alu 1 304 -7 280 284 0 0 chr9 138540521 138540602 -3730842 + L1MEc LINE L1 1575 1655 -4741 563 213 29 7 chr9 138540771 138540907 -3730537 + MLT1J LTR MaLR 4 142 -369 1598 195 70 11 chr9 138540998 138541368 -3730076 + MSTD LTR MaLR 1 392 -4 967 172 32 0 chr9 138541488 138541645 -3729799 - AluJb SINE Alu -10 302 141 2606 67 0 10 chr9 138541679 138541993 -3729451 - AluY SINE Alu 0 311 1 279 87 0 0 chr9 138542107 138542153 -3729291 - MER2 DNA MER2_type -172 173 128 1837 155 0 7 chr9 138542169 138542453 -3728991 + AluJo SINE Alu 5 286 -26 2374 88 3 0 chr9 138542470 138542764 -3728680 + AluSp SINE Alu 1 295 -18 542 282 15 0 chr9 138542765 138542896 -3728548 - MER2 DNA MER2_type -212 133 1 556 271 26 7 chr9 138542907 138543058 -3728386 + MIR SINE MIR 17 170 -92 181 333 20 0 chr9 138543281 138543383 -3728061 + L2 LINE L2 2453 2556 -758 255 280 97 38 chr9 138543527 138543713 -3727731 + L2 LINE L2 2858 3054 -218 2559 70 0 0 chr9 138544082 138544380 -3727064 + AluY SINE Alu 1 298 -13 2368 110 0 0 chr9 138544394 138544704 -3726740 + AluY SINE Alu 1 310 -1 2177 101 7 17 chr9 138544716 138545041 -3726403 + AluSg SINE Alu 1 310 0 360 0 0 0 chr9 138545162 138545202 -3726242 + (TG)n Simple_repeat Simple_repeat 1 40 0 309 68 0 0 chr9 138545202 138545246 -3726198 + (GA)n Simple_repeat Simple_repeat 2 45 0 608 191 12 71 chr9 138545949 138545977 -3725467 - L1MD3 LINE L1 0 7995 7967 2472 78 0 0 chr9 138545977 138546271 -3725173 - AluY SINE Alu -17 294 1 608 191 12 71 chr9 138546271 138546410 -3725034 - L1MD3 LINE L1 -28 7967 7838 3577 166 19 36 chr9 138546412 138546671 -3724773 - L1 LINE L1 -1417 4729 4467 2355 105 0 3 chr9 138546671 138546975 -3724469 - AluSq SINE Alu -10 303 1 3577 166 19 36 chr9 138546975 138547132 -3724312 - L1 LINE L1 -1679 4467 4309 777 134 0 52 chr9 138547132 138547266 -3724178 - FLAM_C SINE Alu -6 127 1 3577 166 19 36 chr9 138547266 138547659 -3723785 - L1 LINE L1 -1837 4309 3933 1802 158 7 21 chr9 138547659 138547823 -3723621 + AluJb SINE Alu 1 161 -151 8835 40 1 0 chr9 138547823 138548791 -3722653 - LTR5 LTR ERVK 0 969 1 1802 158 7 21 chr9 138548791 138548917 -3722527 + AluJb SINE Alu 161 287 -25 184 130 26 39 chr9 138548917 138548994 -3722450 + (TA)n Simple_repeat Simple_repeat 1 76 0 * 294 174 83 16 chr9 138548955 138549076 -3722368 + (CTATA)n Simple_repeat Simple_repeat 2 130 0 2873 181 22 22 chr9 138549087 138549215 -3722229 + L1MA9 LINE L1 4747 4874 -1272 2156 130 102 15 chr9 138549215 138549607 -3721837 - MSTA LTR MaLR 0 428 3 2873 181 22 22 chr9 138549607 138550114 -3721330 + L1MA9 LINE L1 4873 5382 -764 2195 54 65 7 chr9 138550331 138550609 -3720835 - AluY SINE Alu -17 294 1 490 194 155 10 chr9 138550626 138550729 -3720715 + FLAM_C SINE Alu 7 124 -19 1936 157 0 20 chr9 138550739 138551044 -3720400 + AluJo SINE Alu 1 299 -13 2803 162 19 46 chr9 138551087 138551163 -3720281 + L1MA9 LINE L1 5360 5436 -864 1834 190 28 25 chr9 138551163 138551246 -3720198 + MLT1A1 LTR MaLR 2 83 -282 2067 133 3 0 chr9 138551246 138551539 -3719905 + AluSg SINE Alu 1 294 -16 1834 190 28 25 chr9 138551539 138551818 -3719626 + MLT1A1 LTR MaLR 83 365 0 2803 162 19 46 chr9 138551818 138552219 -3719225 + L1MA9 LINE L1 5436 5846 -454 2382 96 0 3 chr9 138552219 138552522 -3718922 + AluSq SINE Alu 1 302 -11 2803 162 19 46 chr9 138552522 138552657 -3718787 + L1MA9 LINE L1 5846 5983 -317 1936 112 3 35 chr9 138552657 138552943 -3718501 - AluSx SINE Alu -35 277 1 2803 162 19 46 chr9 138552943 138552970 -3718474 + L1MA9 LINE L1 5983 6009 -291 2243 83 3 17 chr9 138552970 138553270 -3718174 + AluY SINE Alu 1 296 -15 2803 162 19 46 chr9 138553270 138553559 -3717885 + L1MA9 LINE L1 6009 6236 -64 822 241 0 0 chr9 138553582 138553727 -3717717 - FRAM SINE Alu -31 145 1 2181 113 3 7 chr9 138553764 138554055 -3717389 + AluSx SINE Alu 1 290 -22 1007 147 6 6 chr9 138554146 138554303 -3717141 - FRAM SINE Alu -20 156 1 1660 247 128 34 chr9 138554303 138555047 -3716397 - L1MC3 LINE L1 -158 7627 6814 1843 163 0 26 chr9 138555068 138555374 -3716070 + AluSx SINE Alu 1 298 -14 196 275 29 14 chr9 138555419 138555488 -3715956 + L2 LINE L2 3224 3293 -20 252 391 14 7 chr9 138555498 138555636 -3715808 - L2 LINE L2 0 3272 3134 2872 167 37 35 chr9 138556067 138556335 -3715109 - LTR10E LTR ERV1 0 609 343 2531 60 7 0 chr9 138556335 138556634 -3714810 + AluY SINE Alu 1 301 -10 2872 167 37 35 chr9 138556634 138556928 -3714516 - LTR10E LTR ERV1 -266 343 11 348 318 15 30 chr9 138557906 138558038 -3713406 + L2 LINE L2 3143 3272 0 2055 45 0 12 chr9 138558242 138558486 -3712958 - AluY SINE Alu -12 299 59 23 33 0 0 chr9 138658504 138658534 -3612910 + AT_rich Low_complexity Low_complexity 1 30 0 2137 118 3 3 chr9 138658550 138658854 -3612590 + AluSx SINE Alu 1 304 -8 4352 170 46 22 chr9 138658855 138659447 -3611997 + L1MA4 LINE L1 5290 5915 -385 2172 121 0 0 chr9 138659447 138659753 -3611691 + AluSx SINE Alu 1 306 -6 4352 170 46 22 chr9 138659753 138660115 -3611329 + L1MA4 LINE L1 5915 6267 -33 304 156 13 39 chr9 138660115 138660192 -3611252 + L1MA5 LINE L1 6225 6299 -1 23 0 0 0 chr9 138662802 138662825 -3608619 + AT_rich Low_complexity Low_complexity 1 23 0 182 179 51 0 chr9 138663790 138663829 -3607615 - MIR SINE MIR -142 120 80 235 283 27 12 chr9 138664546 138664648 -3606796 - MIR SINE MIR -62 146 83 250 208 143 0 chr9 138665818 138665895 -3605549 + L2 LINE L2 2958 3045 -227 347 299 27 48 chr9 138666356 138666503 -3604941 - MIR3 SINE MIR -58 150 7 331 272 56 64 chr9 138667341 138667466 -3603978 - MIR SINE MIR -56 152 29 420 244 73 0 chr9 138667546 138667669 -3603775 - ORSL DNA AcHobo -113 162 31 2166 83 0 36 chr9 138667725 138668027 -3603417 + AluSg1 SINE Alu 1 291 -18 368 301 88 13 chr9 138668364 138668603 -3602841 - L1MB5 LINE L1 -71 6103 5847 366 311 81 14 chr9 138668614 138668762 -3602682 - MIR SINE MIR -58 204 47 197 336 56 40 chr9 138672657 138672782 -3598662 + L2 LINE L2 2923 3049 -223 207 393 66 8 chr9 138673366 138673488 -3597956 - MIR SINE MIR -15 247 119 1193 232 7 23 chr9 138674516 138674826 -3596618 + MER58B DNA MER1_type 37 341 0 225 0 0 0 chr9 138675596 138675621 -3595823 + (CACCC)n Simple_repeat Simple_repeat 4 28 0 437 209 33 34 chr9 138675666 138675781 -3595663 - MER106A DNA MER1_type -1 235 175 2145 119 0 7 chr9 138675781 138676083 -3595361 - AluSx SINE Alu -12 300 1 437 209 33 34 chr9 138676083 138676132 -3595312 - MER106A DNA MER1_type -61 175 127 1796 163 3 0 chr9 138676149 138676431 -3595013 + AluJo SINE Alu 9 291 -21 268 296 0 0 chr9 138676442 138676513 -3594931 - MER106B DNA MER1_type -987 72 2 1197 201 0 0 chr9 138676518 138676732 -3594712 + AluSg/x SINE Alu 82 295 -15 501 211 16 0 chr9 138676735 138676858 -3594586 + Charlie5 DNA MER1_type 2500 2624 0 1633 277 120 60 chr9 138676874 138677037 -3594407 + L1MC4 LINE L1 6613 6765 -1277 423 0 0 0 chr9 138677037 138677084 -3594360 + (TG)n Simple_repeat Simple_repeat 2 48 0 2308 105 0 0 chr9 138677084 138677390 -3594054 - AluSx SINE Alu -6 306 1 1633 277 120 60 chr9 138677390 138678439 -3593005 + L1MC4 LINE L1 6764 7899 -143 216 321 62 36 chr9 138678707 138678804 -3592640 + L2 LINE L2 3153 3255 -17 276 54 36 18 chr9 138678804 138678860 -3592584 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 216 321 62 36 chr9 138678860 138678874 -3592570 + L2 LINE L2 3255 3267 -5 185 296 0 0 chr9 138679738 138679792 -3591652 + L2 LINE L2 3208 3261 -11 1234 149 123 43 chr9 138680450 138680726 -3590718 + AluSg SINE Alu 1 298 -12 2134 101 10 0 chr9 138680738 138680865 -3590579 + AluSg SINE Alu 1 125 -185 2326 93 3 3 chr9 138680865 138681178 -3590266 + AluSp SINE Alu 1 313 0 2134 101 10 0 chr9 138681178 138681346 -3590098 + AluSg SINE Alu 125 299 -11 1221 98 0 0 chr9 138681346 138681509 -3589935 + AluSg/x SINE Alu 137 299 -13 339 327 103 24 chr9 138681784 138681949 -3589495 - MIR SINE MIR -31 231 54 30 89 0 0 chr9 138683382 138683461 -3587983 + GC_rich Low_complexity Low_complexity 1 79 0 22 0 0 0 chr9 138683645 138683667 -3587777 + GC_rich Low_complexity Low_complexity 1 22 0 25 83 0 0 chr9 138683742 138683802 -3587642 + GC_rich Low_complexity Low_complexity 1 60 0 22 56 0 0 chr9 138683842 138683878 -3587566 + GC_rich Low_complexity Low_complexity 1 36 0 27 73 0 0 chr9 138684135 138684190 -3587254 + GC_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr9 138684436 138684461 -3586983 + GC_rich Low_complexity Low_complexity 1 25 0 32 67 0 0 chr9 138684617 138684677 -3586767 + GC_rich Low_complexity Low_complexity 1 60 0 805 183 0 0 chr9 138686630 138686761 -3584683 + FLAM_C SINE Alu 1 131 -2 2039 136 3 0 chr9 138687698 138687999 -3583445 + AluJb SINE Alu 1 302 -10 356 273 125 0 chr9 138688884 138689011 -3582433 - MIR SINE MIR -70 138 34 496 168 22 22 chr9 138689540 138689719 -3581725 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 812 176 7 7 chr9 138689732 138690168 -3581276 + (TCCA)n Simple_repeat Simple_repeat 1 436 0 606 207 0 0 chr9 138690215 138690394 -3581050 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 702 200 11 4 chr9 138690460 138690738 -3580706 + (TCCA)n Simple_repeat Simple_repeat 1 280 0 987 235 23 15 chr9 138691778 138692038 -3579406 - L1MB7 LINE L1 -117 6067 5806 1267 232 9 6 chr9 138692039 138692358 -3579086 - Charlie5 DNA MER1_type -60 2552 2233 472 160 20 20 chr9 138692360 138692381 -3579063 - Charlie5 DNA MER1_type -2509 115 95 1797 177 0 0 chr9 138692381 138692680 -3578764 + AluJo SINE Alu 1 299 -13 472 160 20 20 chr9 138692680 138692758 -3578686 - Charlie5 DNA MER1_type -2528 96 16 2079 163 74 36 chr9 138693242 138693342 -3578102 + L1MB7 LINE L1 5668 5763 -421 1997 112 22 56 chr9 138693342 138693663 -3577781 + AluSq SINE Alu 1 310 -3 2079 163 74 36 chr9 138693663 138694059 -3577385 + L1MB7 LINE L1 5763 6183 -1 1209 121 0 0 chr9 138694627 138694982 -3576462 + (TCCA)n Simple_repeat Simple_repeat 1 355 0 889 144 11 0 chr9 138694995 138695169 -3576275 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 890 153 6 0 chr9 138695185 138695362 -3576082 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 807 344 60 15 chr9 138697051 138697572 -3573872 + HERV16 LTR ERVL 86 629 -4367 1888 124 59 3 chr9 138697572 138697862 -3573582 + AluSx SINE Alu 1 306 -6 225 94 0 0 chr9 138697985 138698017 -3573427 + (T)n Simple_repeat Simple_repeat 1 32 0 1587 326 71 46 chr9 138698326 138698599 -3572845 - ERVL LTR ERVL -475 5289 5024 1942 135 3 29 chr9 138698599 138698911 -3572533 - AluJb SINE Alu -8 304 1 1587 326 71 46 chr9 138698911 138700014 -3571430 - ERVL LTR ERVL -740 5024 3832 1345 208 10 14 chr9 138700093 138700382 -3571062 + L1MB7 LINE L1 5890 6177 -7 2047 112 20 7 chr9 138700386 138700681 -3570763 - AluSq SINE Alu -14 299 1 627 310 9 13 chr9 138700723 138700952 -3570492 + L1M4 LINE L1 5 232 -6310 856 218 5 50 chr9 138701606 138701808 -3569636 + AluJb SINE Alu 113 305 -7 1867 83 4 0 chr9 138701826 138702067 -3569377 + AluSx SINE Alu 39 280 -32 396 0 0 0 chr9 138702067 138702111 -3569333 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 994 195 0 0 chr9 138702159 138702333 -3569111 - AluJb SINE Alu -2 310 137 1007 267 81 21 chr9 138702604 138703039 -3568405 - MLT1C LTR MaLR -1 466 6 1258 211 3 55 chr9 138703299 138703611 -3567833 + AluJb SINE Alu 1 296 -16 3039 138 63 76 chr9 138703613 138703825 -3567619 + MER49 LTR ERV1 238 451 -472 1569 166 0 109 chr9 138703825 138704156 -3567288 - AluJb SINE Alu -17 295 1 3039 138 63 76 chr9 138704156 138704326 -3567118 + MER49 LTR ERV1 451 622 -301 1586 122 137 11 chr9 138704326 138704588 -3566856 - AluSx SINE Alu -17 295 1 3039 138 63 76 chr9 138704588 138704860 -3566584 + MER49 LTR ERV1 622 886 -37 1571 171 35 0 chr9 138704860 138705117 -3566327 + AluJb SINE Alu 3 268 -44 3039 138 63 76 chr9 138705117 138705155 -3566289 + MER49 LTR ERV1 886 923 0 2264 81 0 3 chr9 138705204 138705500 -3565944 + AluSg SINE Alu 1 295 -15 1649 85 46 4 chr9 138705504 138705785 -3565659 + LTR23 LTR ERV1 142 434 -3 * 4229 149 17 80 chr9 138705783 138705805 -3565639 + MER4D LTR ERV1 1 23 -880 1797 163 3 7 chr9 138705805 138706094 -3565350 + AluJb SINE Alu 1 288 -24 2353 92 7 0 chr9 138706102 138706405 -3565039 + AluSq SINE Alu 1 305 -8 183 42 0 0 chr9 138706409 138706433 -3565011 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4229 149 17 80 chr9 138706433 138706625 -3564819 + MER4D LTR ERV1 33 236 -667 2297 69 14 0 chr9 138706625 138706915 -3564529 - AluSc SINE Alu -15 294 1 4229 149 17 80 chr9 138706915 138707028 -3564416 + MER4D LTR ERV1 236 355 -548 2216 101 3 0 chr9 138707028 138707324 -3564120 - AluSx SINE Alu -15 297 1 4229 149 17 80 chr9 138707324 138707490 -3563954 + MER4D LTR ERV1 355 530 -373 2436 57 13 0 chr9 138707490 138707789 -3563655 - AluY SINE Alu -8 303 1 1505 131 31 0 chr9 138707789 138708011 -3563433 + MER30 DNA MER1_type 2 230 0 4229 149 17 80 chr9 138708011 138708136 -3563308 + MER4D LTR ERV1 529 660 -243 2221 106 3 0 chr9 138708136 138708439 -3563005 - AluSx SINE Alu -8 304 1 4229 149 17 80 chr9 138708439 138708784 -3562660 + MER4D LTR ERV1 660 903 0 344 276 53 86 chr9 138708793 138708889 -3562555 + L1M4 LINE L1 4287 4385 -1761 2085 118 3 3 chr9 138708889 138709186 -3562258 + AluSp SINE Alu 1 297 -16 344 276 53 86 chr9 138709186 138709203 -3562241 + L1M4 LINE L1 4385 4401 -1745 743 139 29 51 chr9 138709203 138709340 -3562104 + L1MA1 LINE L1 6169 6302 0 344 276 53 86 chr9 138709340 138709377 -3562067 + L1M4 LINE L1 4401 4433 -1713 2358 90 3 0 chr9 138709380 138709692 -3561752 - AluSp SINE Alu 0 313 1 731 175 55 20 chr9 138709754 138709954 -3561490 + L1MC3 LINE L1 7571 7777 -8 308 288 12 0 chr9 138709954 138710034 -3561410 + L1M4 LINE L1 5175 5255 -891 851 189 107 0 chr9 138710034 138710276 -3561168 - LTR50 LTR ERVL 0 795 528 756 204 99 35 chr9 138710276 138710477 -3560967 + MER41C LTR ERV1 1 214 -340 1678 162 27 7 chr9 138710490 138710786 -3560658 + AluJb SINE Alu 1 302 -10 534 150 20 10 chr9 138711147 138711247 -3560197 - AluJo SINE Alu -91 221 121 22 0 0 0 chr9 138711460 138711482 -3559962 + AT_rich Low_complexity Low_complexity 1 22 0 198 229 0 0 chr9 138711624 138711694 -3559750 + CT-rich Low_complexity Low_complexity 1 70 0 241 262 0 47 chr9 138711707 138711814 -3559630 + C-rich Low_complexity Low_complexity 1 102 0 302 143 0 76 chr9 138711821 138711940 -3559504 + (TCC)n Simple_repeat Simple_repeat 1 110 0 253 500 0 0 chr9 138711962 138712132 -3559312 + polypyrimidine Low_complexity Low_complexity 1 170 0 570 202 0 0 chr9 138712137 138712310 -3559134 + CT-rich Low_complexity Low_complexity 1 173 0 1209 169 154 23 chr9 138714422 138714688 -3556756 - AluJb SINE Alu -11 301 1 2241 99 7 0 chr9 138715373 138715667 -3555777 - AluSx SINE Alu -16 296 1 225 91 0 0 chr9 138715827 138715860 -3555584 - L1ME LINE L1 -478 5643 5611 798 206 71 0 chr9 138716920 138717075 -3554369 - FRAM SINE Alu -10 166 1 198 71 0 0 chr9 138717283 138717311 -3554133 + (T)n Simple_repeat Simple_repeat 1 28 0 22 56 0 0 chr9 138718515 138718551 -3552893 + AT_rich Low_complexity Low_complexity 1 36 0 243 114 0 0 chr9 138719418 138719462 -3551982 + (A)n Simple_repeat Simple_repeat 1 44 0 209 73 0 73 chr9 138719819 138719860 -3551584 + (T)n Simple_repeat Simple_repeat 1 38 0 180 211 0 0 chr9 138723533 138723571 -3547873 + L2 LINE L2 2323 2360 -954 920 237 24 45 chr9 138723573 138723705 -3547739 + L1MEc LINE L1 2139 2272 -4124 2287 86 0 10 chr9 138723705 138724019 -3547425 + AluY SINE Alu 1 311 0 920 237 24 45 chr9 138724019 138724262 -3547182 + L1MEc LINE L1 2272 2506 -3890 2245 89 3 10 chr9 138724268 138724581 -3546863 + AluSx SINE Alu 1 311 -1 1223 285 79 2 chr9 138724581 138725128 -3546316 + L1MEc LINE L1 3110 3698 -2517 1513 108 0 5 chr9 138725129 138725343 -3546101 - AluSg/x SINE Alu -8 302 90 253 146 0 0 chr9 138725343 138725384 -3546060 - Alu SINE Alu -260 41 1 568 181 31 47 chr9 138725441 138725568 -3545876 - AluJb SINE Alu -187 125 1 249 162 19 10 chr9 138725569 138725624 -3545820 + L1MEc LINE L1 3696 3751 -2464 1043 153 31 126 chr9 138725624 138725885 -3545559 + MER46A DNA MER2_type 1 236 0 218 244 0 0 chr9 138725920 138725961 -3545483 + polypurine Low_complexity Low_complexity 4 44 0 280 354 27 14 chr9 138726110 138726257 -3545187 + L2 LINE L2 2591 2739 -575 414 188 0 0 chr9 138727094 138727190 -3544254 + CT-rich Low_complexity Low_complexity 3 98 0 192 264 132 11 chr9 138727371 138727462 -3543982 + MIR SINE MIR 37 138 -70 958 45 0 0 chr9 138727552 138727663 -3543781 - L1PA7 LINE L1 -12 6142 6032 1072 175 0 0 chr9 138729453 138729619 -3541825 + AluJb SINE Alu 120 285 -27 180 0 0 0 chr9 138729626 138729646 -3541798 + (CA)n Simple_repeat Simple_repeat 2 21 0 385 261 10 0 chr9 138729646 138729751 -3541693 - L1MC4 LINE L1 -1339 6983 1996 255 152 0 0 chr9 138729751 138729797 -3541647 + (CA)n Simple_repeat Simple_repeat 1 46 0 2031 145 0 3 chr9 138729805 138730116 -3541328 - AluSg SINE Alu 0 310 1 875 144 0 0 chr9 138730121 138730246 -3541198 - FLAM_C SINE Alu -16 127 3 1215 171 104 4 chr9 138730694 138730934 -3540510 - AluJb SINE Alu -34 278 15 210 118 0 0 chr9 138731665 138731699 -3539745 + (CA)n Simple_repeat Simple_repeat 1 34 0 305 312 55 0 chr9 138735560 138735669 -3535775 - MIR SINE MIR -126 136 22 579 223 32 38 chr9 138736651 138736808 -3534636 + MIR SINE MIR 88 243 -19 217 220 170 50 chr9 138737091 138737191 -3534253 + MIR SINE MIR 25 136 -126 294 29 0 0 chr9 138738825 138738860 -3532584 + (TG)n Simple_repeat Simple_repeat 2 36 0 2322 86 0 7 chr9 138738862 138739166 -3532278 - AluSx SINE Alu -10 302 1 309 238 25 0 chr9 138741710 138741790 -3529654 - MER63 DNA MER1_type -301 759 678 485 289 96 30 chr9 138742109 138742379 -3529065 + L2 LINE L2 2580 2867 -447 225 0 0 0 chr9 138744398 138744423 -3527021 + (AGGTG)n Simple_repeat Simple_repeat 1 25 0 336 279 120 16 chr9 138745977 138746160 -3525284 + L1MC5 LINE L1 7615 7816 -145 1547 176 22 4 chr9 138747288 138747561 -3523883 + AluJo SINE Alu 1 278 -34 315 0 0 0 chr9 138747561 138747596 -3523848 + (CA)n Simple_repeat Simple_repeat 2 36 0 792 200 26 1 chr9 138950823 138951024 -3320420 - MER33 DNA MER1_type -250 74 1 188 364 61 8 chr9 138951080 138951212 -3320232 - L2 LINE L2 -167 3105 2967 202 306 54 34 chr9 138952186 138952333 -3319111 + MIR3 SINE MIR 10 159 -49 245 248 34 86 chr9 138952734 138952851 -3318593 + MIR SINE MIR 35 145 -117 1835 247 67 19 chr9 138952985 138953555 -3317889 + MER77 LTR ERV1 1 597 -8 192 330 76 8 chr9 138954263 138954381 -3317063 - MIR SINE MIR -134 128 3 348 317 25 0 chr9 138958416 138958536 -3312908 - MIR3 SINE MIR -71 137 15 325 307 107 14 chr9 138958819 138958959 -3312485 - L1ME LINE L1 -409 5761 5609 1385 217 117 20 chr9 138959774 138960175 -3311269 - MLT1F LTR MaLR -4 538 99 189 343 100 0 chr9 138965507 138965577 -3305867 + MIR SINE MIR 87 163 -99 220 321 9 28 chr9 138966395 138966501 -3304943 - MIR SINE MIR -61 147 44 309 353 50 0 chr9 138966617 138966736 -3304708 + MIR SINE MIR 56 180 -82 220 296 51 10 chr9 138966887 138966985 -3304459 + MIR3 SINE MIR 77 178 -30 423 254 15 37 chr9 138967523 138967657 -3303787 - MER45A DNA AcHobo -2 176 46 450 188 34 34 chr9 138974524 138974641 -3296803 + MSTD LTR MaLR 280 396 0 249 258 39 77 chr9 138974982 138975137 -3296307 - MIR3 SINE MIR -53 155 7 3166 68 0 11 chr9 138975812 138976279 -3295165 - L1P LINE L1 -2157 3989 3528 1535 286 52 74 chr9 138976288 138977496 -3293948 - L1ME LINE L1 -1304 4842 3661 1617 172 0 10 chr9 138977538 138977834 -3293610 - AluSg SINE Alu -16 294 2 485 259 18 0 chr9 138978115 138978227 -3293217 - MER81 DNA DNA 0 114 1 1390 107 0 5 chr9 138980723 138980920 -3290524 - AluSg/x SINE Alu -13 299 104 1871 98 39 53 chr9 138980920 138981062 -3290382 - Tigger2a DNA MER2_type -2355 353 211 2233 98 0 9 chr9 138981062 138981377 -3290067 + AluSp SINE Alu 2 313 0 1871 98 39 53 chr9 138981377 138981592 -3289852 - Tigger2a DNA MER2_type -2497 211 1 2194 93 3 0 chr9 138981623 138981914 -3289530 + AluSq SINE Alu 1 292 -21 2393 53 0 10 chr9 138981921 138982221 -3289223 + AluY SINE Alu 1 297 -14 189 0 0 0 chr9 138982222 138982243 -3289201 + (CATA)n Simple_repeat Simple_repeat 4 24 0 226 284 21 42 chr9 138982504 138982599 -3288845 + MER114 LTR ERV 41 133 -515 902 249 179 3 chr9 138982644 138982990 -3288454 + MER114 LTR ERV 135 541 -107 640 80 23 0 chr9 138983107 138983195 -3288249 - AluSx SINE Alu -3 306 217 889 160 0 26 chr9 138983195 138983351 -3288093 - AluSx SINE Alu -160 152 1 457 293 17 0 chr9 138984560 138984741 -3286703 + HERVL LTR ERVL 3761 3944 -1710 1178 239 121 17 chr9 138985368 138985783 -3285661 + L1MB5 LINE L1 5717 6174 0 2107 118 13 0 chr9 138985791 138986097 -3285347 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr9 138986141 138986162 -3285282 + AT_rich Low_complexity Low_complexity 1 21 0 205 104 52 52 chr9 138987077 138987211 -3284233 + (CCA)n Simple_repeat Simple_repeat 2 135 0 437 293 0 0 chr9 138987229 138987504 -3283940 + (CCCCAA)n Simple_repeat Simple_repeat 1 275 0 493 309 50 80 chr9 138988497 138988934 -3282510 + L2 LINE L2 2848 3271 -1 2191 109 7 0 chr9 138990365 138990669 -3280775 - AluSx SINE Alu -6 306 1 241 269 206 51 chr9 138990684 138990859 -3280585 - MIR SINE MIR -15 247 46 196 283 19 0 chr9 138991369 138991422 -3280022 - MIR SINE MIR -189 73 20 272 266 104 71 chr9 138991703 138991771 -3279673 + MER117 DNA MER1_type 2 66 -131 2549 209 40 24 chr9 138991771 138992320 -3279124 + MER89 LTR ERV1 1 558 -1 272 266 104 71 chr9 138992320 138992405 -3279039 + MER117 DNA MER1_type 66 160 -37 1982 148 7 0 chr9 138993245 138993542 -3277902 + AluSx SINE Alu 14 312 0 421 36 18 0 chr9 138993542 138993598 -3277846 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 289 351 30 8 chr9 138995414 138995548 -3275896 + MIR3 SINE MIR 15 151 -57 569 264 190 4 chr9 138995654 138995896 -3275548 + LTR16C LTR ERVL 205 491 0 233 232 171 0 chr9 138996018 138996100 -3275344 - MER58 DNA MER1_type -119 96 1 987 167 0 0 chr9 138996144 138996294 -3275150 + AluJb SINE Alu 1 150 -162 253 306 151 40 chr9 138996403 138996889 -3274555 - L1MEc LINE L1 -2789 3426 2995 2458 60 0 7 chr9 138996889 138997191 -3274253 + AluY SINE Alu 1 300 -11 253 306 151 40 chr9 138997191 138997987 -3273457 - L1MEc LINE L1 -3220 2995 2034 1135 248 90 23 chr9 138997988 138998375 -3273069 - MLT1C LTR MaLR -2 465 53 376 269 173 29 chr9 138998632 138998974 -3272470 - L1MEc LINE L1 -4641 1755 1365 2328 75 0 0 chr9 138999674 138999966 -3271478 + AluY SINE Alu 20 311 0 522 226 8 0 chr9 139000176 139000300 -3271144 - L1MB7 LINE L1 -305 5879 5755 232 253 193 24 chr9 139000317 139000400 -3271044 - MIR SINE MIR -116 146 50 362 319 68 25 chr9 139000456 139000619 -3270825 + L1MEd LINE L1 59 228 -5891 3650 213 48 7 chr9 139000754 139001751 -3269693 - L1MB7 LINE L1 -11 6173 5135 627 258 0 0 chr9 139001784 139001908 -3269536 - FLAM_C SINE Alu -8 125 2 803 329 76 5 chr9 139001950 139002539 -3268905 + L1MEd LINE L1 461 1091 -5028 1193 247 66 60 chr9 139002548 139003018 -3268426 - MLT1F LTR MaLR 0 542 70 426 286 82 55 chr9 139003024 139003540 -3267904 + L1M3d LINE L1 1255 1763 -4517 28 0 0 0 chr9 139003858 139003886 -3267558 + AT_rich Low_complexity Low_complexity 1 28 0 298 316 15 15 chr9 139005543 139005676 -3265768 - MIR3 SINE MIR -65 143 11 254 367 152 5 chr9 139006068 139006278 -3265166 + MIR SINE MIR 2 242 -20 213 208 0 0 chr9 139006985 139007033 -3264411 + (CTGGGG)n Simple_repeat Simple_repeat 5 52 0 188 356 23 15 chr9 139010947 139011079 -3260365 + L2 LINE L2 2866 2998 -274 444 305 25 54 chr9 139011139 139011206 -3260238 - MIR SINE MIR -37 225 158 1900 146 13 7 chr9 139011206 139011515 -3259929 + AluJo SINE Alu 1 311 -1 444 305 25 54 chr9 139011515 139011650 -3259794 - MIR SINE MIR -104 158 29 197 231 39 0 chr9 139011827 139011879 -3259565 + MIR SINE MIR 83 136 -72 182 217 163 22 chr9 139014722 139014814 -3256630 + MIR SINE MIR 37 141 -121 251 243 78 10 chr9 139018154 139018257 -3253187 + MIR SINE MIR 35 144 -118 381 149 54 7 chr9 139018345 139018493 -3252951 + (TG)n Simple_repeat Simple_repeat 1 155 0 191 246 123 0 chr9 139018568 139018633 -3252811 + MIR SINE MIR 74 146 -62 363 232 19 35 chr9 139019538 139019653 -3251791 - MIR SINE MIR -64 144 62 1542 243 51 64 chr9 139020882 139021425 -3250019 - MLT1G LTR MaLR -59 531 2 247 145 53 46 chr9 139021488 139021640 -3249804 + (TCTA)n Simple_repeat Simple_repeat 3 155 0 279 0 0 0 chr9 139022865 139022896 -3248548 + (TG)n Simple_repeat Simple_repeat 2 32 0 1493 240 50 30 chr9 139025483 139025942 -3245502 - MLT1D LTR MaLR -7 498 31 193 333 27 0 chr9 139029209 139029284 -3242160 + MIR SINE MIR 74 150 -112 862 277 38 3 chr9 139029784 139030073 -3241371 - L1MB4 LINE L1 -317 5863 5565 344 305 28 7 chr9 139030095 139030236 -3241208 + LTR33 LTR ERVL 15 158 -363 353 281 56 64 chr9 139031201 139031450 -3239994 + L1ME3A LINE L1 5692 5938 -232 1266 199 218 22 chr9 139031457 139031870 -3239574 - MLT1D LTR MaLR -11 494 1 639 245 11 0 chr9 139032225 139032400 -3239044 - L1MB5 LINE L1 -20 6154 5960 1003 275 63 11 chr9 139032514 139032881 -3238563 - L1MB5 LINE L1 -163 6011 5626 670 249 111 5 chr9 139033050 139033239 -3238205 - MER3 DNA MER1_type 0 209 1 209 256 0 0 chr9 139034563 139034606 -3236838 + L2 LINE L2 3266 3308 -5 224 343 62 20 chr9 139037141 139037287 -3234157 - MIR3 SINE MIR -24 184 33 231 166 10 126 chr9 139037769 139038034 -3233410 + C-rich Low_complexity Low_complexity 1 234 0 450 309 91 6 chr9 139038644 139038819 -3232625 + MIR SINE MIR 14 203 -59 183 184 0 0 chr9 139038826 139038864 -3232580 + (CA)n Simple_repeat Simple_repeat 1 38 0 302 213 79 110 chr9 139038904 139039068 -3232376 + MER63 DNA MER1_type 1 785 -277 1171 201 10 119 chr9 139039209 139039612 -3231832 + MLT1A1 LTR MaLR 1 359 -6 258 385 37 0 chr9 139039691 139039935 -3231509 + ERVL LTR ERVL 4770 5022 -742 656 309 28 17 chr9 139040489 139040805 -3230639 + LTR16A LTR ERVL 129 457 0 2190 121 0 3 chr9 139043870 139044183 -3227261 + AluSx SINE Alu 1 312 0 480 141 54 0 chr9 139044609 139044701 -3226743 + AluS SINE Alu 1 97 -215 189 0 0 0 chr9 139044830 139044851 -3226593 + (A)n Simple_repeat Simple_repeat 1 21 0 23 33 0 0 chr9 139044963 139044993 -3226451 + AT_rich Low_complexity Low_complexity 1 30 0 333 346 94 54 chr9 139045079 139045559 -3225885 + L1 LINE L1 4799 5297 -849 2150 132 82 12 chr9 139045730 139046070 -3225374 + THE1B LTR MaLR 1 364 0 577 234 44 0 chr9 139046391 139046528 -3224916 - MIR SINE MIR -40 222 80 417 342 16 47 chr9 139048791 139048981 -3222463 + MIR SINE MIR 77 260 -2 401 214 11 0 chr9 139050556 139050645 -3220799 - MLT1D LTR MaLR -315 190 101 343 280 50 0 chr9 139051516 139051616 -3219828 + MIR SINE MIR 32 136 -126 957 194 5 11 chr9 139052688 139052879 -3218565 + AluJb SINE Alu 122 311 -1 314 305 198 0 chr9 139052886 139053053 -3218391 + HAL1 LINE L1 1067 1266 -1241 508 292 43 38 chr9 139053053 139053262 -3218182 - MLT1J1 LTR MaLR -71 375 166 2107 97 0 52 chr9 139053419 139053728 -3217716 - AluSx SINE Alu -19 293 1 298 326 133 0 chr9 139054976 139055111 -3216333 + MIR3 SINE MIR 38 190 -18 556 256 6 36 chr9 139055614 139055782 -3215662 - LTR33 LTR ERVL -347 174 12 1840 268 58 26 chr9 139055813 139056384 -3215060 + MLT1E LTR MaLR 3 591 -2 520 255 50 6 chr9 139056389 139056550 -3214894 + MLT1E-int LTR MaLR 4 171 -1200 1445 118 24 0 chr9 139056556 139056767 -3214677 + AluSp SINE Alu 1 216 -97 688 201 17 115 chr9 139056767 139057001 -3214443 + AluJb SINE Alu 3 213 -99 1136 219 12 83 chr9 139057003 139057327 -3214117 + AluSx SINE Alu 2 302 0 826 298 9 41 chr9 139057334 139057673 -3213771 + MLT1E-int LTR MaLR 279 606 -765 1132 251 57 9 chr9 139058367 139058701 -3212743 + MLT1E LTR MaLR 288 584 -9 206 227 0 52 chr9 139059975 139060072 -3211372 + (GGATG)n Simple_repeat Simple_repeat 5 96 0 220 216 0 52 chr9 139060845 139060942 -3210502 + (GGATG)n Simple_repeat Simple_repeat 5 96 0 249 109 0 0 chr9 139061186 139061232 -3210212 + (GGATG)n Simple_repeat Simple_repeat 1 46 0 302 368 0 18 chr9 139061253 139061367 -3210077 + L1MC4 LINE L1 7790 7901 -141 291 253 0 27 chr9 139061367 139061442 -3210002 + GA-rich Low_complexity Low_complexity 1 73 0 907 193 23 6 chr9 139061834 139062010 -3209434 + AluJo SINE Alu 118 296 -16 206 314 183 11 chr9 139063416 139063591 -3207853 + L2 LINE L2 2855 3059 -213 211 307 119 0 chr9 139065290 139065391 -3206053 - MIR SINE MIR -39 223 111 291 216 144 32 chr9 139066458 139066583 -3204861 + MIR3 SINE MIR 11 149 -59 320 357 63 0 chr9 139067230 139067373 -3204071 + MIR SINE MIR 100 251 -11 252 290 43 0 chr9 139068307 139068400 -3203044 + MER103 DNA DNA 9 105 -61 2469 38 0 3 chr9 139069361 139069654 -3201790 - AluY SINE Alu -19 292 1 234 200 0 0 chr9 139070059 139070104 -3201340 + MER103 DNA DNA 57 101 -65 208 148 33 66 chr9 139071915 139071976 -3199468 + (CTGGGG)n Simple_repeat Simple_repeat 2 60 0 2139 95 3 3 chr9 139074293 139074588 -3196856 - AluSq SINE Alu -18 295 1 368 309 63 0 chr9 139074590 139074716 -3196728 - MIR SINE MIR -64 198 65 372 299 134 0 chr9 139074886 139075013 -3196431 + L1MB8 LINE L1 4711 4854 -1292 2903 270 99 54 chr9 139075014 139075952 -3195492 - L1MC2 LINE L1 -3 7763 6641 2134 108 7 0 chr9 139075952 139076239 -3195205 - AluSx SINE Alu -23 289 1 2903 270 99 54 chr9 139076239 139076755 -3194689 - L1MC2 LINE L1 -1125 6641 6149 220 355 47 12 chr9 139077487 139077656 -3193788 + MIR SINE MIR 8 182 -80 2068 123 0 0 chr9 139077658 139077950 -3193494 - AluSx SINE Alu -20 292 1 272 225 16 85 chr9 139078801 139078930 -3192514 + L1MB8 LINE L1 5643 5762 -359 206 250 0 0 chr9 139079950 139079990 -3191454 + MIR SINE MIR 158 197 -65 1911 119 128 15 chr9 139080285 139080622 -3190822 - THE1C LTR MaLR 0 375 1 265 353 49 8 chr9 139081283 139081405 -3190039 + L2 LINE L2 3137 3263 -9 1024 255 65 28 chr9 139081898 139082220 -3189224 + L1MB8 LINE L1 5845 6178 0 317 323 58 90 chr9 139082445 139082634 -3188810 - MIR SINE MIR -11 251 69 978 273 71 18 chr9 139082724 139083119 -3188325 - LTR37B LTR ERV1 0 468 53 2071 140 0 9 chr9 139083137 139083452 -3187992 - AluSx SINE Alu 0 312 1 413 331 152 8 chr9 139083770 139084350 -3187094 - L2 LINE L2 -189 3124 2466 364 339 58 55 chr9 139084888 139085300 -3186144 + L1MEd LINE L1 596 1005 -5114 2126 135 3 0 chr9 139085300 139085612 -3185832 + AluSq SINE Alu 1 313 0 364 339 58 55 chr9 139085612 139085834 -3185610 + L1MEd LINE L1 1005 1235 -4884 2021 73 0 4 chr9 139085834 139086093 -3185351 + AluY SINE Alu 45 302 -9 364 339 58 55 chr9 139086093 139086117 -3185327 + L1MEd LINE L1 1235 1257 -4862 319 262 41 11 chr9 139086234 139086354 -3185090 - MIR SINE MIR -81 127 2 188 302 0 0 chr9 139086960 139087003 -3184441 + L2 LINE L2 3268 3310 -3 1516 142 94 22 chr9 139088290 139088565 -3182879 - AluJo SINE Alu -17 295 1 475 325 0 0 chr9 139092372 139092532 -3178912 + (CA)n Simple_repeat Simple_repeat 1 160 0 254 222 67 89 chr9 139094678 139094768 -3176676 + MIR SINE MIR 93 180 -82 563 159 30 32 chr9 139095178 139095460 -3175984 + CT-rich Low_complexity Low_complexity 1 281 0 1005 151 0 0 chr9 139095460 139095648 -3175796 + AluSg/x SINE Alu 143 310 0 1714 125 201 6 chr9 139095681 139096034 -3175410 + MSTA LTR MaLR 7 428 0 598 142 28 0 chr9 139096036 139096142 -3175302 + L1MC3 LINE L1 7423 7531 -254 619 216 36 18 chr9 139096152 139096319 -3175125 + L1MC3 LINE L1 7615 7784 -1 1568 139 7 78 chr9 139096361 139096655 -3174789 + AluJb SINE Alu 22 294 -18 2016 128 0 26 chr9 139096858 139097162 -3174282 - AluSx SINE Alu -16 296 1 210 293 0 0 chr9 139098864 139098922 -3172522 + MIR SINE MIR 117 174 -88 253 288 12 0 chr9 139099531 139099611 -3171833 + MER117 DNA MER1_type 26 106 -91 1272 218 71 7 chr9 139101309 139101617 -3169827 - MLT1A1 LTR MaLR -37 328 1 315 338 15 0 chr9 139101635 139101771 -3169673 - L2 LINE L2 -299 2973 2836 215 100 0 25 chr9 139101932 139101972 -3169472 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 362 178 35 6 chr9 139302349 139302523 -2968921 + (TG)n Simple_repeat Simple_repeat 2 180 0 205 174 29 0 chr9 139302558 139302627 -2968817 + (TG)n Simple_repeat Simple_repeat 2 72 0 212 296 93 64 chr9 139303216 139303388 -2968056 + MIR3 SINE MIR 13 189 -19 2123 97 40 0 chr9 139306902 139307202 -2964242 - AluSq SINE Alu -1 312 1 319 241 0 46 chr9 139307443 139307530 -2963914 - L1ME4a LINE L1 -1 6120 6038 212 318 118 0 chr9 139307692 139307802 -2963642 + MIR SINE MIR 19 141 -67 249 174 43 0 chr9 139309181 139309250 -2962194 + (CTCA)n Simple_repeat Simple_repeat 1 72 0 405 187 198 0 chr9 139312123 139312214 -2959230 + MER81 DNA DNA 5 113 -1 192 179 0 0 chr9 139312525 139312564 -2958880 + (TG)n Simple_repeat Simple_repeat 1 39 0 218 193 53 18 chr9 139313943 139314000 -2957444 + GA-rich Low_complexity Low_complexity 1 59 0 928 242 41 58 chr9 139314173 139314218 -2957226 - L1MB7 LINE L1 -5 6175 6131 212 0 36 0 chr9 139314218 139314246 -2957198 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1879 139 0 0 chr9 139314250 139314530 -2956914 - AluSx SINE Alu -31 281 2 928 242 41 58 chr9 139314530 139314832 -2956612 - L1MB7 LINE L1 -52 6128 5817 643 239 136 0 chr9 139315012 139315225 -2956219 - L1MB7 LINE L1 -392 5782 5541 216 0 0 0 chr9 139316006 139316030 -2955414 + (TG)n Simple_repeat Simple_repeat 1 24 0 301 382 64 26 chr9 139316504 139316737 -2954707 + L1M4 LINE L1 4653 4894 -1252 1385 186 52 0 chr9 139316925 139317177 -2954267 - AluJo SINE Alu -21 291 27 233 139 0 0 chr9 139317319 139317355 -2954089 - Alu SINE Alu -134 169 134 2498 48 0 7 chr9 139317664 139317974 -2953470 + AluY SINE Alu 1 308 -3 208 289 0 0 chr9 139318434 139318486 -2952958 + GA-rich Low_complexity Low_complexity 2 53 0 521 216 0 0 chr9 139319193 139319295 -2952149 + MER110A LTR ERV1 73 174 -294 1995 170 37 26 chr9 139319295 139319837 -2951607 - MLT2A2 LTR ERVL 0 554 1 7476 88 3 35 chr9 139319837 139320270 -2951174 - HERVL-A2 LTR ERVL 0 5654 5209 2057 127 7 3 chr9 139320270 139320578 -2950866 - AluSp SINE Alu -4 309 1 7476 88 3 35 chr9 139320578 139321240 -2950204 - HERVL-A2 LTR ERVL -445 5209 4594 1025 170 0 0 chr9 139321241 139321412 -2950032 - AluSp SINE Alu -3 310 140 1993 130 3 7 chr9 139322029 139322328 -2949116 + AluSx SINE Alu 1 298 -14 36 23 0 0 chr9 139322344 139322387 -2949057 + AT_rich Low_complexity Low_complexity 1 43 0 1274 324 52 57 chr9 139322648 139323598 -2947846 - L1ME3A LINE L1 0 6170 5223 1425 241 51 72 chr9 139323598 139324108 -2947336 + MLT1D LTR MaLR 3 501 -4 1274 324 52 57 chr9 139324108 139324370 -2947074 - L1ME3A LINE L1 -947 5223 4961 208 337 0 35 chr9 139324629 139324715 -2946729 + MIR SINE MIR 65 147 -115 191 219 24 0 chr9 139325731 139325772 -2945672 + MIR SINE MIR 106 147 -61 2088 97 7 29 chr9 139326584 139326893 -2944551 - AluSq SINE Alu -11 302 1 240 158 0 0 chr9 139329867 139329924 -2941520 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 284 229 25 76 chr9 139330894 139331012 -2940432 - L3 LINE CR1 -75 1502 1391 229 300 56 0 chr9 139331139 139331229 -2940215 + MIR SINE MIR 42 136 -72 364 305 109 24 chr9 139331835 139332045 -2939399 + MIR SINE MIR 21 248 -14 206 262 26 17 chr9 139332580 139332659 -2938785 + MER5A DNA MER1_type 80 162 -16 1023 281 112 11 chr9 139335193 139335765 -2935679 + L1ME3A LINE L1 4028 4657 -1489 2089 125 0 0 chr9 139335766 139336054 -2935390 + AluSx SINE Alu 1 288 -24 1060 122 0 0 chr9 139336070 139336217 -2935227 + AluSg/x SINE Alu 134 280 -32 303 28 0 0 chr9 139336217 139336253 -2935191 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 743 308 116 31 chr9 139336253 139337431 -2934013 + L1ME3A LINE L1 4647 5951 -211 2090 122 0 3 chr9 139338368 139338672 -2932772 - AluSx SINE Alu -7 305 3 561 270 108 43 chr9 139338976 139339254 -2932190 - MER110A LTR ERV1 -1 467 172 17351 81 10 0 chr9 139339265 139341555 -2929889 + HERVL LTR ERVL 2291 4602 -1052 1451 100 0 0 chr9 139341555 139341745 -2929699 + AluSx SINE Alu 1 190 -122 453 231 0 0 chr9 139341855 139342028 -2929416 + (CA)n Simple_repeat Simple_repeat 2 174 0 323 261 6 0 chr9 139342065 139342226 -2929218 + (CA)n Simple_repeat Simple_repeat 2 163 0 353 206 159 0 chr9 139343450 139343557 -2927887 + L2 LINE L2 3188 3311 -2 4589 203 37 32 chr9 139344084 139345021 -2926423 + L1MB8 LINE L1 4018 4948 -1230 2181 128 0 0 chr9 139345021 139345333 -2926111 + AluSx SINE Alu 1 312 0 4589 203 37 32 chr9 139345333 139345618 -2925826 + L1MB8 LINE L1 4948 5230 -948 1973 111 0 31 chr9 139345618 139345953 -2925491 + AluSc SINE Alu 1 326 0 4589 203 37 32 chr9 139345953 139346869 -2924575 + L1MB8 LINE L1 5230 6176 -2 509 212 68 30 chr9 139347083 139347215 -2924229 - L1ME2 LINE L1 -10 6154 6018 2006 191 96 7 chr9 139348376 139348815 -2922629 + MER66B LTR ERV1 9 486 0 387 113 38 62 chr9 139349427 139349507 -2921937 - MER21A LTR ERV1 -6 925 848 1236 175 96 12 chr9 139349517 139350061 -2921383 - MER21A LTR ERV1 -208 723 1 255 227 0 0 chr9 139351283 139351380 -2920064 + (TG)n Simple_repeat Simple_repeat 2 98 0 548 194 0 6 chr9 139351424 139351599 -2919845 + (TG)n Simple_repeat Simple_repeat 1 174 0 370 200 0 14 chr9 139351621 139351761 -2919683 + (TG)n Simple_repeat Simple_repeat 1 138 0 1181 296 138 14 chr9 139352026 139352608 -2918836 - MLT2F LTR ERVL -8 655 2 455 272 57 13 chr9 139352609 139352767 -2918677 - ERVL-F LTR ERVL -8 5756 5592 1151 261 76 82 chr9 139352848 139353386 -2918058 - MLT1F1 LTR MaLR 0 567 8 735 301 102 0 chr9 139353415 139353681 -2917763 - ERVL-F LTR ERVL -257 5507 5215 234 313 100 20 chr9 139355658 139355808 -2915636 - MIR3 SINE MIR -2 206 45 1609 112 17 147 chr9 139357016 139357364 -2914080 - AluSx SINE Alu -9 303 1 403 250 40 0 chr9 139357556 139357656 -2913788 - MIR SINE MIR -126 136 33 1591 175 77 25 chr9 139358337 139358663 -2912781 - MLT1B LTR MaLR -47 343 1 347 229 57 41 chr9 139359366 139359488 -2911956 - MLT1J2 LTR MaLR -229 221 98 26 0 0 0 chr9 139359819 139359845 -2911599 + AT_rich Low_complexity Low_complexity 1 26 0 1636 245 172 0 chr9 139359894 139360371 -2911073 + MLT1F1 LTR MaLR 9 567 0 195 129 0 0 chr9 139362447 139362478 -2908966 + (GAA)n Simple_repeat Simple_repeat 2 32 0 219 220 34 0 chr9 139363122 139363181 -2908263 - MIR SINE MIR -88 120 60 231 300 39 39 chr9 139364592 139364722 -2906722 + L2 LINE L2 3143 3272 0 881 151 3 3 chr9 139364726 139365069 -2906375 + (TGAA)n Simple_repeat Simple_repeat 1 343 0 346 326 11 39 chr9 139365842 139366020 -2905424 + MIR3 SINE MIR 21 193 -15 206 250 159 11 chr9 139367031 139367119 -2904325 + L2 LINE L2 3210 3310 -3 220 115 0 58 chr9 139367224 139367276 -2904168 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 3170 271 80 39 chr9 139367279 139368760 -2902684 + L1MC4 LINE L1 100 1641 -4755 2486 265 35 63 chr9 139368747 139370300 -2901144 + L1ME1 LINE L1 2763 4442 -1773 * 1709 129 4 0 chr9 139370300 139370555 -2900889 + AluSx SINE Alu 35 290 -22 2486 265 35 63 chr9 139370555 139370720 -2900724 + L1ME1 LINE L1 4442 4610 -1605 316 85 0 34 chr9 139370820 139370879 -2900565 + (CCCCCT)n Simple_repeat Simple_repeat 2 58 0 1260 210 108 47 chr9 139370880 139371323 -2900121 + L1ME1 LINE L1 4970 5439 -776 374 289 9 0 chr9 139371338 139371445 -2899999 + L1MC4 LINE L1 1784 6772 -1339 1068 141 0 0 chr9 139371449 139371626 -2899818 + (TA)n Simple_repeat Simple_repeat 1 177 0 1303 124 0 0 chr9 139371676 139371862 -2899582 + AluJb SINE Alu 3 188 -124 367 103 8 24 chr9 139371883 139371908 -2899536 + L1MC/D LINE L1 5370 5394 -761 777 176 78 0 chr9 139371908 139372050 -2899394 + FRAM SINE Alu 5 157 -9 367 103 8 24 chr9 139372050 139372104 -2899340 + L1MC/D LINE L1 5394 5445 -710 616 281 12 0 chr9 139372123 139372283 -2899161 + L1MA10 LINE L1 6171 6332 -2 814 303 124 6 chr9 139372308 139372655 -2898789 + L1ME1 LINE L1 5513 5900 -335 855 126 0 0 chr9 139372734 139372853 -2898591 + FRAM SINE Alu 18 136 -40 239 172 0 17 chr9 139372853 139372911 -2898533 + GA-rich Low_complexity Low_complexity 1 57 0 852 178 9 15 chr9 139372923 139373255 -2898189 + GA-rich Low_complexity Low_complexity 1 330 0 355 350 158 22 chr9 139373302 139373662 -2897782 - HAL1 LINE L1 -1204 1303 895 267 309 30 18 chr9 139373663 139373831 -2897613 + CT-rich Low_complexity Low_complexity 2 171 0 259 178 14 14 chr9 139373938 139374011 -2897433 + GA-rich Low_complexity Low_complexity 2 74 0 1034 98 0 6 chr9 139374016 139374179 -2897265 + (GGAA)n Simple_repeat Simple_repeat 4 165 0 610 299 4 13 chr9 139374182 139374426 -2897018 + L1MA10 LINE L1 5938 6334 0 508 290 69 92 chr9 139374657 139375137 -2896307 - Charlie4a DNA MER1_type 0 508 40 512 271 210 34 chr9 139375777 139376105 -2895339 - MER31B LTR ERV1 -80 386 1 27 81 0 0 chr9 139377115 139377177 -2894267 + AT_rich Low_complexity Low_complexity 1 62 0 534 229 23 8 chr9 139377567 139377698 -2893746 - MLT1C LTR MaLR -328 139 7 229 331 33 33 chr9 139377703 139377824 -2893620 - L2 LINE L2 -29 3284 3164 1162 180 39 0 chr9 139378191 139378424 -2893020 + MLT1D LTR MaLR 4 245 -260 283 337 57 57 chr9 139378544 139378808 -2892636 - MER65A LTR ERV1 -102 343 80 379 192 64 72 chr9 139378816 139378941 -2892503 - MER65B LTR ERV1 -406 125 2 1091 188 107 0 chr9 139378943 139379177 -2892267 + MLT1D LTR MaLR 247 505 0 270 309 80 6 chr9 139379673 139379835 -2891609 - LTR16A LTR ERVL -276 174 1 330 305 128 12 chr9 139380491 139380655 -2890789 + MIR3 SINE MIR 23 205 -3 576 282 130 48 chr9 139380837 139381073 -2890371 + MLT1H LTR MaLR 1 216 -333 6184 53 0 7 chr9 139381073 139381827 -2889617 + L1PA5 LINE L1 5406 6154 0 576 282 130 48 chr9 139381827 139382051 -2889393 + MLT1H LTR MaLR 216 499 -50 1706 199 62 21 chr9 139383466 139383852 -2887592 - MSTA LTR MaLR -4 424 23 2220 104 3 0 chr9 139384995 139385312 -2886132 - pTR5 LTR ERV1 -2046 392 75 335 249 10 12 chr9 139385312 139385419 -2886025 - LTR30 LTR ERV1 -94 624 375 4506 128 84 75 chr9 139385419 139386398 -2885046 - pTR5 LTR ERV1 -413 2025 742 24 0 0 0 chr9 139387327 139387351 -2884093 + GC_rich Low_complexity Low_complexity 1 24 0 310 369 108 0 chr9 139387482 139387658 -2883786 - MIR SINE MIR -5 257 63 234 264 114 19 chr9 139388388 139388502 -2882942 + MIR SINE MIR 34 156 -66 210 190 17 35 chr9 139389645 139389703 -2881741 + CT-rich Low_complexity Low_complexity 3 59 0 223 274 126 42 chr9 139389703 139389798 -2881646 - L2 LINE L2 -11 3261 3159 1064 256 101 39 chr9 139392569 139393003 -2878441 + MLT1D LTR MaLR 3 463 -42 1625 190 127 0 chr9 139393188 139393519 -2877925 + MER83C LTR ERV1 1 373 0 6633 169 38 31 chr9 139393572 139396024 -2875420 + MER83C-int LTR ERV1 57 4650 -230 629 234 116 70 chr9 139396068 139396440 -2875004 + MLT1D LTR MaLR 1 389 -116 318 255 43 11 chr9 139396666 139396760 -2874684 + MLT1D LTR MaLR 368 464 -3 2605 110 50 0 chr9 139396813 139397213 -2874231 - MSTA LTR MaLR 0 428 9 1785 206 40 0 chr9 139398063 139398389 -2873055 + MER44D DNA MER2_type 1 609 0 2228 92 0 25 chr9 139398474 139398790 -2872654 - AluSq SINE Alu -5 308 1 695 171 256 28 chr9 139398918 139399094 -2872350 + MER20 DNA MER1_type 1 216 -3 301 278 51 125 chr9 139399171 139399524 -2871920 + L2 LINE L2 2934 3260 -12 935 156 6 0 chr9 139399557 139399736 -2871708 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 614 208 7 0 chr9 139399762 139399911 -2871533 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 2139 129 3 0 chr9 139400206 139400517 -2870927 + AluSx SINE Alu 1 312 0 735 146 82 18 chr9 139400712 139400883 -2870561 - MER53 DNA DNA -1 188 7 1900 199 18 3 chr9 139400948 139401285 -2870159 - MER2 DNA MER2_type -1 343 2 231 337 53 21 chr9 139402184 139402279 -2869165 - L2 LINE L2 -204 3068 2971 311 229 164 25 chr9 139402588 139402710 -2868734 + MER5B DNA MER1_type 28 166 -12 777 214 43 67 chr9 139403686 139404061 -2867383 + MLT1C LTR MaLR 43 390 0 1433 133 18 9 chr9 139404380 139404606 -2866838 - MER30 DNA MER1_type 0 230 3 2164 185 48 39 chr9 139404946 139405428 -2866016 - MER66B LTR ERV1 0 486 1 268 273 182 0 chr9 139405898 139406041 -2865403 + MER5A DNA MER1_type 3 171 -18 333 246 131 16 chr9 139406548 139406670 -2864774 + MIR SINE MIR 12 147 -115 1335 275 92 18 chr9 139407274 139407552 -2863892 - L1MC3 LINE L1 -68 7717 7461 1575 116 4 17 chr9 139407552 139407816 -2863628 - AluSx SINE Alu 0 314 54 1335 275 92 18 chr9 139407816 139408024 -2863420 - L1MC3 LINE L1 -324 7461 7194 1903 179 13 18 chr9 139408920 139409301 -2862143 + MLT1B LTR MaLR 1 379 -11 635 258 86 34 chr9 139409465 139409732 -2861712 + MER31B LTR ERV1 146 426 -40 225 178 0 22 chr9 139410194 139410239 -2861205 - MER53 DNA DNA -3 186 143 440 284 10 1 chr9 139410243 139410382 -2861062 + L1MB8 LINE L1 5619 5759 -411 975 249 133 30 chr9 139410396 139410801 -2860643 - MER31B LTR ERV1 -19 447 1 1476 259 29 5 chr9 139410808 139411221 -2860223 + L1MB8 LINE L1 5756 6178 0 232 247 12 25 chr9 139411319 139411400 -2860044 - MER53 DNA DNA -28 161 82 1902 127 0 3 chr9 139412232 139412516 -2858928 - AluSg SINE Alu -6 304 22 1167 247 175 5 chr9 139414938 139415355 -2856089 + MLT1D LTR MaLR 1 488 -17 259 308 47 0 chr9 139417890 139417995 -2853449 + MIR SINE MIR 36 146 -62 357 265 60 17 chr9 139418114 139418231 -2853213 + L1ME4a LINE L1 6000 6121 0 5501 259 45 4 chr9 139419391 139420223 -2851221 + L1ME1 LINE L1 2322 3118 -3028 1991 96 0 0 chr9 139420223 139420493 -2850951 - AluY SINE Alu -11 300 31 5501 259 45 4 chr9 139420493 139421356 -2850088 + L1ME1 LINE L1 3118 4087 -2059 1341 254 68 11 chr9 139421362 139421803 -2849641 + L1ME1 LINE L1 5254 5719 -2276 723 249 68 34 chr9 139422176 139422441 -2849003 + L1ME1 LINE L1 5869 6142 -24 360 0 0 0 chr9 139422530 139422570 -2848874 + (CA)n Simple_repeat Simple_repeat 2 41 0 2047 181 48 23 chr9 139422570 139423006 -2848438 + L1MC3 LINE L1 6649 7095 -690 241 200 15 31 chr9 139423006 139423071 -2848373 + MLT1A2 LTR MaLR 45 108 -459 2086 115 0 3 chr9 139423583 139423878 -2847566 + AluSx SINE Alu 1 294 -18 288 338 7 35 chr9 139425847 139425992 -2845452 + L1ME LINE L1 5621 5761 -360 210 319 22 22 chr9 139426457 139426595 -2844849 + (TGGA)n Simple_repeat Simple_repeat 2 139 0 276 266 83 9 chr9 139428344 139428453 -2842991 - MIR SINE MIR -65 197 81 309 276 23 48 chr9 139428580 139428937 -2842507 + C-rich Low_complexity Low_complexity 1 347 0 2330 242 30 33 chr9 139429088 139429708 -2841736 - L1MB3 LINE L1 0 6183 5607 2194 105 3 0 chr9 139429708 139430004 -2841440 + AluSq SINE Alu 1 297 -16 2330 242 30 33 chr9 139430004 139430154 -2841290 - L1MB3 LINE L1 -576 5607 5458 186 250 109 0 chr9 139430233 139430297 -2841147 - MIR SINE MIR -111 151 81 336 348 0 9 chr9 139431396 139431511 -2839933 + (CA)n Simple_repeat Simple_repeat 1 114 0 427 214 56 16 chr9 139432038 139432164 -2839280 + MLT1A2 LTR MaLR 244 374 0 507 235 70 152 chr9 139432178 139432867 -2838577 - L1MC5 LINE L1 -478 7483 6852 2102 185 35 10 chr9 139433508 139433913 -2837531 + MSTB1 LTR MaLR 15 429 -3 315 71 0 0 chr9 139435790 139435832 -2835612 + (CGTG)n Simple_repeat Simple_repeat 1 42 0 858 269 23 13 chr9 139435920 139436275 -2835169 - L1MC5 LINE L1 -986 6822 6495 308 328 88 49 chr9 139436527 139436914 -2834530 - L1MC4a LINE L1 -1736 6072 5671 1209 224 128 29 chr9 139436968 139437351 -2834093 - MLT1C LTR MaLR 0 467 47 2853 206 9 18 chr9 139437358 139437573 -2833871 - MER41D LTR ERV1 -8 549 334 2118 109 7 0 chr9 139437573 139437867 -2833577 + AluSx SINE Alu 1 296 -16 2853 206 9 18 chr9 139437867 139438205 -2833239 - MER41D LTR ERV1 -223 334 1 374 225 165 11 chr9 139438237 139438352 -2833092 - L1M3 LINE L1 -610 5570 5432 1959 125 16 7 chr9 139438352 139438656 -2832788 - AluSq SINE Alu -6 307 1 1019 85 0 0 chr9 139438656 139438786 -2832658 - AluSq/x SINE Alu -177 135 6 270 215 63 0 chr9 139438794 139438873 -2832571 - L1M3 LINE L1 -2380 5428 5345 414 342 13 7 chr9 139438880 139439035 -2832409 - L2 LINE L2 -16 3297 3142 974 251 14 0 chr9 139439036 139439259 -2832185 - MLT1D LTR MaLR -1 504 279 338 276 96 63 chr9 139439260 139439399 -2832045 - L2 LINE L2 -468 2846 2694 2054 99 27 7 chr9 139439399 139439693 -2831751 + AluSq SINE Alu 1 300 -13 338 276 96 63 chr9 139439693 139439792 -2831652 - L2 LINE L2 -620 2694 2600 243 328 114 0 chr9 139439957 139440088 -2831356 - L2 LINE L2 -785 2529 2384 188 294 33 66 chr9 139440351 139440562 -2830882 - L2 LINE L2 -1463 1851 1648 404 374 76 28 chr9 139441960 139442383 -2829061 + L1ME3A LINE L1 4959 5401 -745 314 375 85 21 chr9 139442397 139442524 -2828920 + L1ME3A LINE L1 5496 5613 -2195 1938 138 0 10 chr9 139442524 139442821 -2828623 - AluJb SINE Alu -14 298 5 314 375 85 21 chr9 139442821 139442928 -2828516 + L1ME3A LINE L1 5613 5745 -2063 1622 288 54 16 chr9 139445727 139446280 -2825164 + MLT1G1 LTR MaLR 3 576 -19 275 324 20 10 chr9 139446816 139446918 -2824526 + L1ME LINE L1 47 149 -5921 1412 292 133 38 chr9 139446967 139447012 -2824432 + L1ME LINE L1 128 167 -5913 2645 133 23 41 chr9 139447012 139447395 -2824049 + MSTA LTR MaLR 1 377 -51 2358 77 0 3 chr9 139447395 139447707 -2823737 + AluY SINE Alu 1 311 0 2645 133 23 41 chr9 139447707 139447759 -2823685 + MSTA LTR MaLR 377 428 0 1412 292 133 38 chr9 139447759 139448062 -2823382 + L1ME LINE L1 167 440 -5640 857 279 118 43 chr9 139448062 139448546 -2822898 + MLT2B1 LTR ERVL 1 520 0 1412 292 133 38 chr9 139448546 139449686 -2821758 + L1ME LINE L1 440 1720 -4360 1630 134 66 80 chr9 139449805 139450279 -2821165 - THE1B LTR MaLR 0 364 1 234 336 8 0 chr9 139450279 139450404 -2821040 + L1ME LINE L1 1910 2035 -4226 2389 61 0 3 chr9 139450405 139450701 -2820743 + AluY SINE Alu 1 295 -16 189 147 0 0 chr9 139450724 139450758 -2820686 + (A)n Simple_repeat Simple_repeat 1 34 0 5944 247 50 57 chr9 139450797 139453316 -2818128 + L1ME LINE L1 2134 4634 -1446 1463 180 39 30 chr9 139453317 139453622 -2817822 + L1MA5 LINE L1 5991 6298 -2 607 239 94 0 chr9 139453865 139454066 -2817378 + L1ME3A LINE L1 5893 6112 -58 1941 243 57 20 chr9 139454322 139455009 -2816435 + L1ME LINE L1 4625 5336 -744 205 356 78 0 chr9 139455565 139455655 -2815789 + MIR SINE MIR 154 250 -12 411 344 55 18 chr9 139456737 139456955 -2814489 + MIR SINE MIR 31 256 -6 2428 110 48 20 chr9 139457385 139457739 -2813705 - THE1B LTR MaLR 0 364 1 11996 96 6 7 chr9 139457739 139459321 -2812123 - THE1B-int LTR MaLR 0 1580 1 2329 119 48 20 chr9 139459321 139459675 -2811769 - THE1B LTR MaLR 0 364 1 353 271 63 59 chr9 139460364 139460585 -2810859 + L2 LINE L2 2638 2859 -455 244 324 77 39 chr9 139460775 139460957 -2810487 + MLT1D LTR MaLR 1 189 -316 639 253 131 4 chr9 139462109 139462354 -2809090 + MLT1D LTR MaLR 207 482 -23 495 305 128 78 chr9 139462778 139463219 -2808225 - L2 LINE L2 -742 2572 2154 1625 92 5 0 chr9 139463219 139463437 -2808007 + AluSc SINE Alu 87 305 -4 495 305 128 78 chr9 139463437 139464498 -2806946 - L2 LINE L2 -1160 2154 996 698 330 62 21 chr9 139465468 139465938 -2805506 + HAL1b LINE L1 621 1109 -239 403 355 32 18 chr9 139466009 139466229 -2805215 - MIR SINE MIR -21 241 19 357 294 75 27 chr9 139466256 139466402 -2805042 + HAL1b LINE L1 1196 1348 0 2513 44 0 0 chr9 139466431 139466727 -2804717 + AluY SINE Alu 9 304 -7 362 109 16 0 chr9 139466738 139466802 -2804642 - L1MB8 LINE L1 -21 6157 6093 2321 223 19 24 chr9 139466813 139467256 -2804188 - L1MB3 LINE L1 0 6183 5742 2109 120 0 0 chr9 139467256 139467564 -2803880 - AluSx SINE Alu 0 312 5 2321 223 19 24 chr9 139467564 139467694 -2803750 - L1MB3 LINE L1 -441 5742 5613 221 319 21 85 chr9 139467933 139468074 -2803370 - MIR SINE MIR -22 240 109 182 329 92 0 chr9 139468615 139468691 -2802753 + MIR3 SINE MIR 82 164 -44 4577 80 7 7 chr9 139469516 139470220 -2801224 - L1P LINE L1 -1151 4995 4292 680 92 9 0 chr9 139470187 139470296 -2801148 + L1P LINE L1 4205 4314 -1832 * 528 190 133 0 chr9 139470296 139470491 -2800953 - L1MB3 LINE L1 -1780 4366 4146 793 107 0 82 chr9 139470536 139470695 -2800749 - L1MA3 LINE L1 0 6305 6160 226 324 182 7 chr9 139470911 139471059 -2800385 + MIR3 SINE MIR 30 203 -5 195 69 0 0 chr9 139471496 139471525 -2799919 + (CAGCC)n Simple_repeat Simple_repeat 3 31 0 27 29 0 0 chr9 139471917 139471951 -2799493 + GC_rich Low_complexity Low_complexity 1 34 0 210 71 0 0 chr9 139473177 139473205 -2798239 + (CA)n Simple_repeat Simple_repeat 1 28 0 376 312 25 32 chr9 139474848 139475005 -2796439 + MIR3 SINE MIR 28 183 -25 1820 140 61 3 chr9 139475366 139475659 -2795785 + AluSx SINE Alu 1 310 -2 39 74 0 0 chr9 139476955 139477036 -2794408 + AT_rich Low_complexity Low_complexity 1 81 0 263 342 26 8 chr9 139477158 139477275 -2794169 - MIR SINE MIR -113 149 31 639 115 0 0 chr9 139477720 139477807 -2793637 + AluS SINE Alu 1 87 -226 344 366 57 23 chr9 139480279 139480726 -2790718 - L1M4c LINE L1 -1232 1511 927 302 294 0 0 chr9 139481448 139481516 -2789928 + MIR SINE MIR 79 146 -62 32 57 0 0 chr9 139483631 139483684 -2787760 + GC_rich Low_complexity Low_complexity 1 53 0 225 188 50 38 chr9 139483714 139483794 -2787650 + (CGGGG)n Simple_repeat Simple_repeat 2 82 0 191 74 19 56 chr9 139483835 139483889 -2787555 + (CGG)n Simple_repeat Simple_repeat 3 54 0 249 33 0 0 chr9 139484177 139484207 -2787237 + (TCC)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr9 139484215 139484243 -2787201 + GC_rich Low_complexity Low_complexity 1 28 0 326 262 32 25 chr9 139484452 139484583 -2786861 - MIR SINE MIR -60 148 33 330 80 0 0 chr9 139486366 139486416 -2785028 + (TG)n Simple_repeat Simple_repeat 2 51 0 414 134 0 0 chr9 139486522 139486589 -2784855 + (TGGA)n Simple_repeat Simple_repeat 2 68 0 447 349 23 29 chr9 139486977 139487186 -2784258 - MIR SINE MIR -56 206 1 657 171 0 20 chr9 139487418 139487914 -2783530 + (CA)n Simple_repeat Simple_repeat 1 486 0 188 286 48 0 chr9 139488204 139488267 -2783177 + MIR3 SINE MIR 123 188 -20 213 156 22 22 chr9 139488929 139488974 -2782470 + CT-rich Low_complexity Low_complexity 3 47 0 406 313 22 56 chr9 139489066 139489245 -2782199 - MER5B DNA MER1_type 0 178 6 683 264 72 38 chr9 139489317 139489552 -2781892 + MIR SINE MIR 18 260 -2 361 191 73 0 chr9 139490366 139490434 -2781010 - L2 LINE L2 -202 3070 2998 189 0 0 0 chr9 139491531 139491552 -2779892 + (GA)n Simple_repeat Simple_repeat 2 22 0 415 162 9 38 chr9 139492035 139492140 -2779304 + CT-rich Low_complexity Low_complexity 1 102 0 340 157 0 24 chr9 139492258 139492341 -2779103 + CT-rich Low_complexity Low_complexity 1 81 0 962 148 0 11 chr9 139492350 139492532 -2778912 + (TCC)n Simple_repeat Simple_repeat 1 180 0 441 180 0 0 chr9 139492532 139492621 -2778823 + CT-rich Low_complexity Low_complexity 2 90 0 26 30 0 0 chr9 139493480 139493513 -2777931 + AT_rich Low_complexity Low_complexity 1 33 0 200 91 0 30 chr9 139495036 139495069 -2776375 + (TG)n Simple_repeat Simple_repeat 1 32 0 185 328 0 0 chr9 139496066 139496124 -2775320 + L3 LINE CR1 1513 1570 -7 231 304 25 0 chr9 139496796 139496875 -2774569 + MER5A DNA MER1_type 88 168 -21 263 276 53 29 chr9 139496924 139497063 -2774381 + MIR3 SINE MIR 68 172 -36 269 26 26 0 chr9 139497100 139497175 -2774269 + (ATTG)n Simple_repeat Simple_repeat 1 115 0 269 26 26 0 chr9 139497175 139497213 -2774231 + (ATTG)n Simple_repeat Simple_repeat 4 42 0 212 308 22 33 chr9 139498091 139498182 -2773262 + MIR3 SINE MIR 112 201 -7 365 324 21 21 chr9 139500018 139500160 -2771284 - MIR SINE MIR -8 254 113 180 77 0 0 chr9 139500247 139500273 -2771171 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr9 139502952 139502974 -2768470 + GC_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr9 139503388 139503431 -2768013 + (GGCTG)n Simple_repeat Simple_repeat 5 47 0 2304 90 3 0 chr9 139504610 139504911 -2766533 + AluSx SINE Alu 3 304 -8 225 222 16 63 chr9 139504915 139504978 -2766466 - MIR SINE MIR -20 242 183 209 227 23 0 chr9 139506229 139506273 -2765171 - MIR SINE MIR -12 250 206 2004 121 0 24 chr9 139507973 139508271 -2763173 - AluSc SINE Alu -18 291 1 189 278 19 0 chr9 139509355 139509409 -2762035 + MIR SINE MIR 68 122 -86 267 282 68 0 chr9 139509716 139509819 -2761625 - MIR SINE MIR -86 176 67 844 257 129 25 chr9 139510075 139510377 -2761067 - MLT1C LTR MaLR -16 451 95 1950 95 82 27 chr9 139510377 139510671 -2760773 - AluSg SINE Alu 0 310 1 844 257 129 25 chr9 139510671 139510772 -2760672 - MLT1C LTR MaLR -372 95 6 529 238 50 22 chr9 139511771 139511952 -2759492 - MER20 DNA MER1_type -2 217 32 239 302 47 28 chr9 139511965 139512071 -2759373 + MIR SINE MIR 38 145 -117 253 246 14 0 chr9 139512500 139512569 -2758875 - MER63 DNA MER1_type -301 759 690 233 352 93 49 chr9 139512908 139513070 -2758374 + L3 LINE CR1 1402 1570 -7 23 0 0 0 chr9 139513211 139513234 -2758210 + AT_rich Low_complexity Low_complexity 1 23 0 207 297 110 0 chr9 139513889 139513980 -2757464 - L2 LINE L2 -2 3311 3211 1966 121 26 10 chr9 139520432 139520696 -2750748 + AluSg SINE Alu 1 259 -143 192 77 0 0 chr9 139520696 139520722 -2750722 + (CAAG)n Simple_repeat Simple_repeat 3 28 0 1096 106 11 6 chr9 139520731 139520910 -2750534 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1966 121 26 10 chr9 139520910 139521032 -2750412 + AluSg SINE Alu 266 402 0 285 228 0 22 chr9 139521449 139521541 -2749903 - L1M LINE L1 -2453 5355 5266 185 83 28 0 chr9 139521621 139521657 -2749787 + (TG)n Simple_repeat Simple_repeat 2 38 0 1868 128 9 64 chr9 139522057 139522235 -2749209 - AluSx SINE Alu -1 311 158 207 0 0 0 chr9 139522235 139522258 -2749186 + (TG)n Simple_repeat Simple_repeat 2 24 0 1868 128 9 64 chr9 139522258 139522408 -2749036 - AluSx SINE Alu -154 158 1 240 220 0 20 chr9 139523119 139523169 -2748275 + (CA)n Simple_repeat Simple_repeat 1 49 0 310 357 8 23 chr9 139523785 139523914 -2747530 - MIR SINE MIR -62 146 20 208 286 204 0 chr9 139525260 139525358 -2746086 + MIR SINE MIR 64 181 -81 277 204 36 78 chr9 139525497 139525664 -2745780 + (GGGTG)n Simple_repeat Simple_repeat 3 162 0 2731 141 86 21 chr9 139526247 139526857 -2744587 - MER51A LTR ERV1 0 640 23 185 289 36 12 chr9 139526925 139527008 -2744436 + L2 LINE L2 3187 3271 -1 184 336 48 19 chr9 139528835 139528939 -2742505 - L2 LINE L2 -1 3271 3165 198 321 209 16 chr9 139528996 139529307 -2742137 - L2 LINE L2 -1650 1664 1294 200 330 11 21 chr9 139530442 139530536 -2740908 + L3 LINE CR1 1317 1409 -168 323 240 13 0 chr9 139531613 139531688 -2739756 - MLT1J2 LTR MaLR -311 139 64 222 234 0 0 chr9 139531824 139531871 -2739573 + MIR SINE MIR 80 126 -136 812 220 41 29 chr9 139533159 139533404 -2738040 + MLT1D LTR MaLR 27 274 -231 190 255 97 83 chr9 139534085 139534230 -2737214 - MIR3 SINE MIR -19 189 43 226 324 84 67 chr9 139534303 139534528 -2736916 - L2 LINE L2 -2 3270 3042 192 292 62 0 chr9 139535471 139535536 -2735908 + L2 LINE L2 2928 2996 -276 1121 244 43 35 chr9 139535589 139535958 -2735486 - MLT1J LTR MaLR -104 407 36 315 298 84 0 chr9 139537234 139537365 -2734079 + L2 LINE L2 3160 3301 -12 874 125 38 0 chr9 139537369 139537746 -2733698 + (TGGA)n Simple_repeat Simple_repeat 1 391 0 839 117 41 0 chr9 139537763 139537934 -2733510 + (TGGA)n Simple_repeat Simple_repeat 2 179 0 1015 91 29 0 chr9 139537961 139538136 -2733308 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 328 279 121 67 chr9 139538230 139538395 -2733049 + L2 LINE L2 3107 3280 -33 1365 154 68 152 chr9 139538403 139538891 -2732553 + MER66A LTR ERV1 27 473 -5 602 311 138 7 chr9 139538964 139539269 -2732175 + L2 LINE L2 2963 3307 -6 660 228 14 0 chr9 139539375 139539520 -2731924 - MLT1C LTR MaLR -1 466 320 1122 198 41 73 chr9 139539693 139539857 -2731587 - MLT1C LTR MaLR -135 332 183 2278 90 3 0 chr9 139539857 139540167 -2731277 - AluY SINE Alu 0 311 1 1122 198 41 73 chr9 139540167 139540345 -2731099 - MLT1C LTR MaLR -284 183 1 292 339 63 49 chr9 139541553 139541901 -2729543 + L2 LINE L2 2336 2688 -626 268 355 129 14 chr9 139541973 139542260 -2729184 + L2 LINE L2 2911 3230 -83 541 240 144 12 chr9 139542642 139542989 -2728455 - MLT1D LTR MaLR 0 505 82 4145 189 43 49 chr9 139545825 139546785 -2724659 - LTR13 LTR ERVK 0 954 1 1191 241 70 37 chr9 139546849 139547331 -2724113 - MLT1D LTR MaLR -7 498 1 208 231 39 0 chr9 139547641 139547693 -2723751 + L2 LINE L2 2228 2281 -1033 320 325 59 0 chr9 139549853 139550022 -2721422 + MIR SINE MIR 63 241 -21 276 258 0 0 chr9 139550477 139550574 -2720870 + (CA)n Simple_repeat Simple_repeat 2 98 0 323 349 23 8 chr9 139550986 139551115 -2720329 - MER5A DNA MER1_type -41 148 18 289 296 97 83 chr9 139551413 139551764 -2719680 - MLT1J LTR MaLR -19 492 137 2150 125 0 3 chr9 139551989 139552302 -2719142 + AluSx SINE Alu 1 312 0 560 125 10 0 chr9 139553418 139553514 -2717930 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 564 287 115 19 chr9 139553594 139553803 -2717641 - MIR SINE MIR -32 230 2 1984 128 0 3 chr9 139553813 139554102 -2717342 - AluSc SINE Alu -21 288 1 237 65 0 0 chr9 139554141 139554172 -2717272 + (GAA)n Simple_repeat Simple_repeat 2 32 0 409 321 0 0 chr9 139555586 139555698 -2715746 - MIR SINE MIR -48 214 103 226 309 117 0 chr9 139555814 139555908 -2715536 - MIR3 SINE MIR -22 186 82 251 324 14 0 chr9 139556212 139556286 -2715158 - L2 LINE L2 -80 3192 3118 349 300 19 62 chr9 139556337 139556466 -2714978 - MIR SINE MIR -66 142 43 553 320 39 3 chr9 139556588 139556872 -2714572 + L1ME LINE L1 267 560 -5836 872 318 71 34 chr9 139556910 139557667 -2713777 + L1ME LINE L1 630 1430 -4966 2057 121 0 55 chr9 139557667 139557997 -2713447 + AluSx SINE Alu 1 312 0 872 318 71 34 chr9 139557997 139558245 -2713199 + L1ME LINE L1 1430 1667 -4729 1853 282 50 20 chr9 139558555 139558710 -2712734 + L1ME LINE L1 4385 4534 -1681 922 27 53 0 chr9 139558710 139558860 -2712584 + (TAGA)n Simple_repeat Simple_repeat 1 158 0 1853 282 50 20 chr9 139558860 139559658 -2711786 + L1ME LINE L1 4534 5401 -814 381 356 56 70 chr9 139559698 139559760 -2711684 + L1ME LINE L1 5472 5533 -657 1849 148 7 0 chr9 139559760 139560050 -2711394 - AluJo SINE Alu -20 292 1 381 356 56 70 chr9 139560050 139560271 -2711173 + L1ME LINE L1 5533 5751 -439 516 203 0 1 chr9 139560274 139560393 -2711051 - MLT1D LTR MaLR 0 505 350 305 253 35 13 chr9 139560393 139560498 -2710946 - MLT1E2 LTR MaLR -322 183 69 587 221 25 104 chr9 139560690 139560885 -2710559 + MER31B LTR ERV1 245 419 -47 1972 107 0 7 chr9 139560885 139561157 -2710287 - AluSx SINE Alu -4 308 39 587 221 25 104 chr9 139561157 139561201 -2710243 + MER31B LTR ERV1 419 465 -1 360 325 77 5 chr9 139562133 139562342 -2709102 + L2 LINE L2 2828 3051 -221 812 220 41 29 chr9 139564682 139564927 -2706517 + MLT1D LTR MaLR 27 274 -231 190 255 97 83 chr9 139565603 139565748 -2705696 - MIR3 SINE MIR -19 189 43 226 324 84 67 chr9 139565821 139566046 -2705398 - L2 LINE L2 -2 3270 3042 192 292 62 0 chr9 139566989 139567054 -2704390 + L2 LINE L2 2928 2996 -276 1121 244 43 35 chr9 139567107 139567476 -2703968 - MLT1J LTR MaLR -104 407 36 315 298 84 0 chr9 139568752 139568883 -2702561 + L2 LINE L2 3160 3301 -12 874 128 40 0 chr9 139568887 139569378 -2702066 + (TGGA)n Simple_repeat Simple_repeat 1 510 0 265 327 0 28 chr9 139569392 139569499 -2701945 + C-rich Low_complexity Low_complexity 2 105 0 199 278 150 69 chr9 139571087 139571260 -2700184 + L2 LINE L2 3082 3268 -4 276 244 12 0 chr9 139572357 139572443 -2699001 - MER117 DNA MER1_type -44 153 67 2631 107 6 8 chr9 139572968 139573333 -2698111 - THE1B LTR MaLR 0 364 1 340 344 74 11 chr9 139574079 139574268 -2697176 - L1ME3A LINE L1 -224 5946 5746 390 74 0 0 chr9 139574355 139574409 -2697035 + (TG)n Simple_repeat Simple_repeat 2 55 0 407 289 94 50 chr9 139576454 139576613 -2694831 - MIR3 SINE MIR -3 205 40 319 314 58 58 chr9 139576676 139576747 -2694697 + L3 LINE CR1 1426 1499 -78 577 309 107 37 chr9 139576747 139576990 -2694454 - MIR SINE MIR -1 261 2 319 314 58 58 chr9 139576990 139577055 -2694389 + L3 LINE CR1 1498 1562 -15 1471 263 92 26 chr9 139577111 139577686 -2693758 - MLT1E2 LTR MaLR -1 625 13 372 289 105 25 chr9 139577988 139578227 -2693217 + ERVL LTR ERVL 4019 4276 -1488 1210 250 74 31 chr9 139578240 139578493 -2692951 + MLT1C LTR MaLR 1 283 -184 8429 54 5 4 chr9 139578493 139579499 -2691945 - LTR13 LTR ERVK 0 1007 1 1210 250 74 31 chr9 139579499 139579693 -2691751 + MLT1C LTR MaLR 283 467 0 209 81 0 27 chr9 139579882 139579919 -2691525 + (CACAC)n Simple_repeat Simple_repeat 1 36 0 333 212 21 98 chr9 139579942 139580135 -2691309 + (CACAC)n Simple_repeat Simple_repeat 1 178 0 890 197 63 36 chr9 139581483 139581795 -2689649 - MLT1F1 LTR MaLR -16 551 179 501 71 0 0 chr9 139581797 139581867 -2689577 + (GA)n Simple_repeat Simple_repeat 2 71 0 196 278 104 26 chr9 139581999 139582114 -2689330 - MIR SINE MIR -116 146 23 * 204 362 28 43 chr9 139582099 139582240 -2689204 + MIR SINE MIR 15 153 -109 317 262 65 9 chr9 139582982 139583089 -2688355 - MLT1J2 LTR MaLR -302 148 36 528 268 208 15 chr9 139583558 139584094 -2687350 + L2 LINE L2 2673 3308 -5 245 312 21 0 chr9 139586429 139586522 -2684922 - MLT1I LTR MaLR -31 378 284 192 204 0 53 chr9 139586644 139586757 -2684687 + CT-rich Low_complexity Low_complexity 4 110 0 210 312 26 13 chr9 139589079 139589156 -2682288 + MIR3 SINE MIR 126 203 -5 213 239 0 0 chr9 139589183 139589229 -2682215 - L3 LINE CR1 -118 1459 1414 278 344 106 25 chr9 139590458 139590618 -2680826 + MIR SINE MIR 19 191 -71 828 228 144 48 chr9 139591525 139591920 -2679524 - MLT1C LTR MaLR -16 451 19 378 275 78 0 chr9 139592022 139592164 -2679280 - MIR3 SINE MIR -42 166 14 241 214 17 26 chr9 139592829 139592946 -2678498 + GA-rich Low_complexity Low_complexity 2 117 0 380 339 59 17 chr9 139594278 139594635 -2676809 - L1MEc LINE L1 -5753 643 272 558 253 30 20 chr9 139594637 139594839 -2676605 - L1MEc LINE L1 -6155 241 38 262 323 138 0 chr9 139597556 139597773 -2673671 + L2 LINE L2 2842 3088 -225 3018 233 53 19 chr9 139598396 139600585 -2670859 + L1MD1 LINE L1 1697 4372 -1843 1820 197 19 3 chr9 139600585 139600960 -2670484 - MLT1B LTR MaLR -6 384 4 346 276 23 0 chr9 139600960 139601047 -2670397 + L1MD1 LINE L1 4371 4459 -1756 234 328 87 34 chr9 139601200 139601465 -2669979 + L2 LINE L2 2239 2517 -797 183 430 26 0 chr9 139601806 139601920 -2669524 + L2 LINE L2 3191 3307 -6 204 213 0 0 chr9 139602025 139602086 -2669358 + CT-rich Low_complexity Low_complexity 1 61 0 301 299 55 55 chr9 139602735 139602899 -2668545 + MER5B DNA MER1_type 14 177 -1 2180 84 14 0 chr9 139603094 139603379 -2668065 - AluSx SINE Alu -23 289 1 2224 104 3 3 chr9 139604863 139605172 -2666272 - AluSc SINE Alu 0 309 1 185 225 0 0 chr9 139605262 139605302 -2666142 - MIR SINE MIR -114 148 109 835 236 21 12 chr9 139605321 139605563 -2665881 + L1MD1 LINE L1 5519 5762 -549 316 268 12 0 chr9 139605573 139605655 -2665789 + L1MD1 LINE L1 5866 5948 -363 596 265 16 16 chr9 139605981 139606170 -2665274 - MLT2B1 LTR ERVL 0 520 332 320 232 21 53 chr9 139606147 139606242 -2665202 - MLT2B3 LTR ERVL -280 274 183 * 975 203 97 0 chr9 139606240 139606477 -2664967 + LTR42 LTR ERVL 10 269 -226 987 210 23 42 chr9 139606808 139607070 -2664374 + LTR42 LTR ERVL 239 495 0 232 364 0 0 chr9 139607724 139607812 -2663632 + (CA)n Simple_repeat Simple_repeat 1 88 0 449 243 110 6 chr9 139610697 139610870 -2660574 + MER20 DNA MER1_type 29 219 0 21 57 0 0 chr9 139611369 139611404 -2660040 + AT_rich Low_complexity Low_complexity 1 35 0 292 285 15 31 chr9 139611411 139611541 -2659903 + (CA)n Simple_repeat Simple_repeat 1 128 0 328 335 40 69 chr9 139611879 139612052 -2659392 + L1MEc LINE L1 1925 2092 -4304 1777 142 36 7 chr9 139612196 139612539 -2658905 - AluJo SINE Alu 0 351 1 197 324 27 0 chr9 139614104 139614178 -2657266 - L2 LINE L2 -2140 1174 1099 363 368 49 5 chr9 139614703 139614926 -2656518 - MIR SINE MIR -16 246 14 184 326 0 54 chr9 139615785 139615877 -2655567 - MER5A DNA MER1_type -48 141 55 818 252 103 3 chr9 139617931 139618252 -2653192 + MLT1A1 LTR MaLR 13 365 0 214 254 225 49 chr9 139618296 139618508 -2652936 - L2 LINE L2 -287 3026 2781 519 306 0 0 chr9 139618814 139619239 -2652205 + (TG)n Simple_repeat Simple_repeat 1 425 0 851 234 54 50 chr9 139620269 139620305 -2651139 - MER58A DNA MER1_type -2197 223 189 1941 138 7 0 chr9 139620305 139620596 -2650848 + AluSq SINE Alu 1 293 -20 851 234 54 50 chr9 139620596 139620781 -2650663 - MER58A DNA MER1_type -2231 189 1 250 339 63 24 chr9 139620789 139620916 -2650528 - MIR SINE MIR -72 190 59 447 273 70 12 chr9 139621013 139621185 -2650259 - MLT2B1 LTR ERVL 0 520 339 1951 162 211 20 chr9 139621189 139621596 -2649848 + MER66B LTR ERV1 1 485 -1 398 266 28 0 chr9 139621627 139621736 -2649708 + MER58B DNA MER1_type 201 312 -29 848 143 0 0 chr9 139621736 139621862 -2649582 - AluSg/x SINE Alu -15 297 172 564 290 63 5 chr9 139621864 139622071 -2649373 - MLT2B2 LTR ERVL -296 219 1 191 318 30 0 chr9 139622106 139622172 -2649272 - MIR SINE MIR -106 156 89 484 167 10 10 chr9 139622748 139622844 -2648600 - MLT1B LTR MaLR -21 369 274 207 300 25 12 chr9 139623502 139623582 -2647862 - L2 LINE L2 -16 3256 3176 215 292 115 18 chr9 139624123 139624236 -2647208 - L2 LINE L2 -221 3051 2928 182 319 33 44 chr9 139626036 139626127 -2645317 + L2 LINE L2 2875 2964 -350 335 315 40 47 chr9 139627240 139627389 -2644055 + L1MEc LINE L1 262 409 -5987 326 335 68 11 chr9 139627548 139627724 -2643720 + L1MEc LINE L1 1670 1855 -4541 329 317 19 6 chr9 139627732 139627893 -2643551 + L1MC4 LINE L1 7413 7575 -467 257 288 12 0 chr9 139628037 139628117 -2643327 + L1MC4 LINE L1 7593 7673 -369 262 256 150 0 chr9 139628451 139628568 -2642876 + MIR SINE MIR 50 192 -67 2191 221 50 61 chr9 139630443 139631003 -2640441 + MLT2B3 LTR ERVL 1 554 0 347 333 51 13 chr9 139631916 139632072 -2639372 + L1MC4 LINE L1 5594 5755 -2053 23 0 0 0 chr9 139637026 139637049 -2634395 + AT_rich Low_complexity Low_complexity 1 23 0 369 254 8 49 chr9 139637582 139637704 -2633740 - MLT1C LTR MaLR -1 466 350 228 245 88 61 chr9 139637771 139637918 -2633526 - MLT1C LTR MaLR -257 248 98 242 353 8 8 chr9 139638512 139638634 -2632810 + (TG)n Simple_repeat Simple_repeat 2 123 0 341 210 25 0 chr9 139640080 139640161 -2631283 + MER31B LTR ERV1 7 89 -377 2230 45 8 0 chr9 139640166 139640495 -2630949 - AluY SINE Alu 0 347 17 1736 223 30 58 chr9 139640567 139641069 -2630375 + MLT2B3 LTR ERVL 1 488 -66 955 94 23 10 chr9 139641080 139641483 -2629961 + (TAGA)n Simple_repeat Simple_repeat 1 408 0 305 247 10 62 chr9 139641483 139641580 -2629864 + L1MC4 LINE L1 6612 6703 -1339 234 0 0 0 chr9 139641580 139641606 -2629838 + (CATA)n Simple_repeat Simple_repeat 4 29 0 317 148 0 0 chr9 139641606 139641660 -2629784 + MLT2A2 LTR ERVL 400 453 0 1487 212 72 12 chr9 139642186 139642587 -2628857 - MER67A LTR ERV1 -10 533 109 316 210 92 42 chr9 139642954 139643073 -2628371 + MER65A LTR ERV1 1 125 -320 266 338 52 52 chr9 139643081 139643445 -2627999 + MER65A LTR ERV1 80 443 -2 378 275 247 0 chr9 139644194 139644376 -2627068 + LTR67 LTR ERVL 117 343 -214 * 4346 155 130 31 chr9 139644359 139645413 -2626031 + MER52C LTR ERV1 22 1278 0 323 291 18 0 chr9 139646094 139646204 -2625240 + LTR33 LTR ERVL 110 221 -300 241 170 0 0 chr9 139646828 139646875 -2624569 - MER117 DNA MER1_type -107 90 44 2134 104 43 0 chr9 139646907 139647206 -2624238 + AluSx SINE Alu 1 312 0 273 313 25 0 chr9 139648044 139648124 -2623320 - MIR SINE MIR -89 173 92 2378 63 0 3 chr9 139648126 139648429 -2623015 + AluY SINE Alu 1 302 -9 285 232 174 39 chr9 139648487 139648642 -2622802 + MLT1D LTR MaLR 35 210 -295 600 236 83 0 chr9 139648670 139648827 -2622617 + MLT1D LTR MaLR 288 457 -48 204 272 25 62 chr9 139649209 139649290 -2622154 + MIR3 SINE MIR 117 194 -14 708 185 98 29 chr9 139649740 139649913 -2621531 + MER53 DNA DNA 1 185 -4 258 288 0 0 chr9 139650702 139650768 -2620676 + CT-rich Low_complexity Low_complexity 4 69 0 272 338 44 44 chr9 139652187 139652323 -2619121 + L2 LINE L2 3136 3271 -1 2429 74 0 3 chr9 139652376 139652688 -2618756 + AluY SINE Alu 1 311 0 193 287 77 63 chr9 139652966 139653109 -2618335 - MIR3 SINE MIR -63 145 1 249 33 0 0 chr9 139653311 139653341 -2618103 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 224 274 84 0 chr9 139653937 139654032 -2617412 + MIR SINE MIR 46 148 -60 416 301 153 6 chr9 139654724 139654887 -2616557 + MIR SINE MIR 30 216 -46 184 339 15 0 chr9 139656476 139656541 -2614903 - L2 LINE L2 -1 3312 3247 255 170 0 21 chr9 139657428 139657475 -2613969 + (CCA)n Simple_repeat Simple_repeat 2 47 0 313 293 17 17 chr9 139660174 139660290 -2611154 + (CA)n Simple_repeat Simple_repeat 1 116 0 447 291 11 33 chr9 139660369 139660551 -2610893 + (CA)n Simple_repeat Simple_repeat 1 178 0 371 263 21 18 chr9 139660597 139660932 -2610512 + (CA)n Simple_repeat Simple_repeat 1 336 0 457 335 55 55 chr9 139662768 139663025 -2608419 - MIR SINE MIR -4 258 2 312 246 159 0 chr9 139664104 139664230 -2607214 - MIR3 SINE MIR -11 197 52 243 0 0 0 chr9 139664320 139664347 -2607097 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 205 354 115 0 chr9 139664347 139664443 -2607001 - L2 LINE L2 -29 3243 3137 1465 235 140 17 chr9 139665207 139665670 -2605774 + MLT2B1 LTR ERVL 1 520 0 361 358 53 5 chr9 139665780 139665987 -2605457 + MIR SINE MIR 32 248 -14 581 337 121 30 chr9 139666560 139667132 -2604312 + L2 LINE L2 2034 2657 -657 680 234 83 48 chr9 139667297 139667587 -2603857 - MLT1D LTR MaLR -10 495 196 2350 91 3 0 chr9 139669521 139669829 -2601615 + AluY SINE Alu 2 310 -1 305 323 10 0 chr9 139669900 139669996 -2601448 - MIR SINE MIR -59 203 107 449 246 0 60 chr9 139671084 139671218 -2600226 + MIR SINE MIR 35 160 -102 347 270 40 32 chr9 139671310 139671436 -2600008 - MIR SINE MIR -102 160 34 759 234 29 0 chr9 139671499 139671674 -2599770 + MER3 DNA MER1_type 1 180 -29 355 286 82 86 chr9 139673008 139673277 -2598167 - L2 LINE L2 -3 3269 3002 233 188 0 0 chr9 139674210 139674258 -2597186 + L2 LINE L2 3265 3312 -1 591 266 173 7 chr9 139674657 139674928 -2596516 - MER5C DNA MER1_type -3 321 6 347 322 0 38 chr9 139675753 139675936 -2595508 + (CACG)n Simple_repeat Simple_repeat 3 178 0 304 345 0 39 chr9 139676003 139676373 -2595071 + (CACG)n Simple_repeat Simple_repeat 1 355 0 378 318 0 28 chr9 139676379 139676558 -2594886 + (CA)n Simple_repeat Simple_repeat 1 174 0 228 247 52 26 chr9 139676725 139676802 -2594642 - MIR SINE MIR -91 171 93 219 318 82 9 chr9 139677091 139677201 -2594243 + MIR3 SINE MIR 88 205 -3 217 129 29 29 chr9 139677386 139677456 -2593988 + (TCTCTG)n Simple_repeat Simple_repeat 6 75 0 747 152 0 0 chr9 139677458 139677636 -2593808 + CT-rich Low_complexity Low_complexity 2 179 0 579 346 77 6 chr9 139677984 139678510 -2592934 + L1ME LINE L1 5205 5781 -383 291 165 51 51 chr9 139679009 139679088 -2592356 + MIR3 SINE MIR 108 186 -22 700 330 14 8 chr9 139680805 139681172 -2590272 + Harlequin LTR ERV1 1686 2054 -5731 203 237 0 51 chr9 139681174 139681233 -2590211 + GA-rich Low_complexity Low_complexity 5 60 0 999 150 41 23 chr9 139681243 139681463 -2589981 + LTR18B LTR ERVL 261 484 -130 275 130 0 0 chr9 139681462 139681508 -2589936 + LTR18B LTR ERVL 221 266 -348 * 341 299 6 37 chr9 139681515 139681679 -2589765 + GA-rich Low_complexity Low_complexity 1 159 0 2391 347 44 25 chr9 139681723 139683347 -2588097 + Harlequin LTR ERV1 2851 5541 -2244 1861 116 6 47 chr9 139683347 139683667 -2587777 + AluY SINE Alu 1 307 -4 2391 347 44 25 chr9 139683667 139683890 -2587554 + Harlequin LTR ERV1 5541 5758 -2027 586 327 33 60 chr9 139684625 139684726 -2586718 + Harlequin LTR ERV1 3368 3470 -3426 2062 98 30 24 chr9 139684726 139685023 -2586421 - AluSx SINE Alu -13 299 1 586 327 33 60 chr9 139685023 139685627 -2585817 + Harlequin LTR ERV1 3470 4054 -2842 544 281 63 56 chr9 139686336 139686851 -2584593 - MER34 LTR ERV1 0 542 5 189 0 0 0 chr9 139688022 139688043 -2583401 + (TGAG)n Simple_repeat Simple_repeat 1 21 0 1241 263 71 60 chr9 139688063 139688241 -2583203 - MER34 LTR ERV1 -3 539 365 2298 93 3 6 chr9 139688241 139688552 -2582892 - AluSx SINE Alu -2 310 1 1241 263 71 60 chr9 139688552 139688906 -2582538 - MER34 LTR ERV1 -177 365 1 278 189 19 0 chr9 139689323 139689376 -2582068 + MER34 LTR ERV1 1 54 -488 340 252 81 16 chr9 139689520 139689643 -2581801 + LTR48 LTR ERV1 483 613 -174 208 147 0 0 chr9 139690354 139690388 -2581056 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 200 191 0 0 chr9 139691338 139691380 -2580064 + C-rich Low_complexity Low_complexity 1 42 0 216 135 0 0 chr9 139693805 139693842 -2577602 + (CA)n Simple_repeat Simple_repeat 1 37 0 889 136 30 8 chr9 139693914 139694292 -2577152 + (TGGA)n Simple_repeat Simple_repeat 1 386 0 251 355 0 11 chr9 139694804 139694897 -2576547 + MIR SINE MIR 13 104 -158 2788 93 3 3 chr9 139694909 139695273 -2576171 + THE1B LTR MaLR 1 364 0 235 326 62 23 chr9 139696168 139696297 -2575147 + MIR SINE MIR 89 222 -40 1795 168 0 0 chr9 139696609 139696889 -2574555 + AluJb SINE Alu 1 280 -32 808 80 24 0 chr9 139696891 139697016 -2574428 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 1470 280 31 4 chr9 139697357 139697868 -2573576 + MER90 LTR ERV1 90 614 0 220 335 66 7 chr9 139697921 139698073 -2573371 + L2 LINE L2 2954 3114 -158 727 236 46 54 chr9 139699022 139699255 -2572189 + L1MC2 LINE L1 4926 5159 -987 784 234 19 0 chr9 139699255 139699409 -2572035 + FRAM SINE Alu 1 157 -9 2119 125 0 3 chr9 139699415 139699720 -2571724 + AluSx SINE Alu 1 304 -8 727 236 46 54 chr9 139699720 139699759 -2571685 + L1MC2 LINE L1 5164 5203 -943 2142 84 0 39 chr9 139699760 139700070 -2571374 + AluY SINE Alu 1 298 -13 1046 198 30 117 chr9 139700083 139700311 -2571133 + L1MC2 LINE L1 5771 5864 -480 2364 186 58 0 chr9 139700311 139700746 -2570698 + LOR1b LTR ERV1 2 461 0 1046 198 30 117 chr9 139700746 139700911 -2570533 + L1MC2 LINE L1 5864 6042 -302 1970 117 3 69 chr9 139700956 139701290 -2570154 - AluSx SINE Alu 0 312 1 233 160 0 80 chr9 139702189 139702239 -2569205 - L2 LINE L2 -3 3310 3265 206 250 26 13 chr9 139706078 139706154 -2565290 + C-rich Low_complexity Low_complexity 1 77 0 532 122 0 20 chr9 139706932 139707030 -2564414 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 1181 282 94 31 chr9 139707063 139707154 -2564290 - L1MC4 LINE L1 -6 8036 7952 414 39 0 0 chr9 139707154 139707206 -2564238 + (TC)n Simple_repeat Simple_repeat 1 52 0 1181 282 94 31 chr9 139707206 139707721 -2563723 - L1MC4 LINE L1 -90 7952 7392 211 189 0 0 chr9 139707838 139707875 -2563569 + CT-rich Low_complexity Low_complexity 2 38 0 240 342 148 15 chr9 139707876 139708282 -2563162 - L1MC4 LINE L1 -1815 5993 5534 2321 98 0 13 chr9 139708505 139708820 -2562624 - AluSx SINE Alu -1 311 1 2057 138 0 10 chr9 139708909 139709221 -2562223 - AluSx SINE Alu -3 309 1 698 269 136 10 chr9 139710883 139711191 -2560253 - MER67B LTR ERV1 -2 659 313 1249 294 58 60 chr9 139711306 139712199 -2559245 + L1M4 LINE L1 2366 3256 -2890 2149 129 0 0 chr9 139712199 139712493 -2558951 + AluSx SINE Alu 2 295 -17 1249 294 58 60 chr9 139712493 139713179 -2558265 + L1M4 LINE L1 3256 3942 -2204 2065 131 0 7 chr9 139713599 139713897 -2557547 + AluSq SINE Alu 3 298 -15 430 280 168 10 chr9 139714130 139714745 -2556699 + L1MEd LINE L1 781 1514 -4656 309 151 0 0 chr9 139714845 139714898 -2556546 + (ATG)n Simple_repeat Simple_repeat 1 53 0 469 330 35 6 chr9 139714898 139715071 -2556373 - MIR SINE MIR -3 259 82 417 257 36 36 chr9 139715174 139715314 -2556130 - MIR SINE MIR -27 235 96 673 145 14 29 chr9 139715331 139715615 -2555829 + (TGGA)n Simple_repeat Simple_repeat 1 279 0 548 188 8 0 chr9 139715628 139715761 -2555683 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 449 262 6 15 chr9 139718085 139718421 -2553023 + (TG)n Simple_repeat Simple_repeat 1 333 0 422 315 0 7 chr9 139718711 139718854 -2552590 + (TG)n Simple_repeat Simple_repeat 2 143 0 2268 103 0 0 chr9 139719358 139719659 -2551785 + AluSc SINE Alu 1 301 -8 342 320 50 0 chr9 139719952 139720052 -2551392 - MER91C DNA MER1_type -35 105 1 352 283 90 7 chr9 139720396 139720541 -2550903 + L1ME4a LINE L1 5916 6072 -49 187 310 70 0 chr9 139723156 139723227 -2548217 + MIR SINE MIR 117 192 -70 249 236 83 0 chr9 139724734 139724806 -2546638 - MIR SINE MIR -80 182 105 236 292 62 9 chr9 139724979 139725092 -2546352 + (CATG)n Simple_repeat Simple_repeat 3 121 0 210 362 29 17 chr9 139726647 139726821 -2544623 + (CGTG)n Simple_repeat Simple_repeat 4 179 0 * 403 335 0 27 chr9 139726719 139726904 -2544540 + (TG)n Simple_repeat Simple_repeat 1 180 0 414 212 13 7 chr9 139727915 139728066 -2543378 + (TCCA)n Simple_repeat Simple_repeat 4 155 0 612 161 21 0 chr9 139728122 139728265 -2543179 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 919 126 6 22 chr9 139728301 139728484 -2542960 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 215 263 32 74 chr9 139728557 139728652 -2542792 - L2 LINE L2 -53 3219 3129 450 0 0 0 chr9 139729495 139729545 -2541899 + (TG)n Simple_repeat Simple_repeat 2 51 0 484 218 54 0 chr9 139729701 139729848 -2541596 - MER20 DNA MER1_type -17 202 48 259 303 45 0 chr9 139731836 139731925 -2539519 - MER45A DNA AcHobo -3 175 83 253 301 158 0 chr9 139732189 139732324 -2539120 + MIR3 SINE MIR 11 164 -58 1379 122 73 167 chr9 139733495 139733765 -2537679 - MER4B LTR ERV1 -186 424 215 2170 103 3 7 chr9 139733765 139734066 -2537378 - AluSq SINE Alu -13 300 1 1379 122 73 167 chr9 139734066 139734263 -2537181 - MER4B LTR ERV1 -395 215 1 556 255 36 5 chr9 139735198 139735390 -2536054 + MLT1C LTR MaLR 270 467 0 428 314 120 6 chr9 139735574 139735749 -2535695 - MIR SINE MIR -55 207 13 356 311 157 24 chr9 139736186 139736556 -2534888 - LTR16A LTR ERVL -6 444 26 255 385 37 0 chr9 139738141 139738437 -2533007 - HERVL LTR ERVL -642 5012 4706 286 259 28 46 chr9 139738815 139738923 -2532521 + MER76 LTR ERV 144 249 -439 544 312 52 17 chr9 139738961 139739192 -2532252 + MER76 LTR ERV 348 586 -102 1484 205 54 19 chr9 139739193 139739563 -2531881 + MLT1B LTR MaLR 1 383 -7 562 298 47 16 chr9 139739671 139739926 -2531518 - HERVL LTR ERVL -1351 4303 4041 923 221 33 0 chr9 139740024 139740237 -2531207 - MLT2B1 LTR ERVL -8 512 293 1325 218 36 79 chr9 139740406 139740500 -2530944 + L1M4 LINE L1 4681 4778 -1368 2011 133 0 0 chr9 139740500 139740824 -2530620 - AluSx SINE Alu 0 312 1 1325 218 36 79 chr9 139740824 139741234 -2530210 + L1M4 LINE L1 4778 5163 -983 181 309 99 25 chr9 139741251 139741332 -2530112 + L2 LINE L2 3227 3313 0 772 301 16 58 chr9 139741408 139741910 -2529534 + L1M4 LINE L1 3924 4404 -1742 1646 141 7 49 chr9 139742034 139742340 -2529104 + MER4A LTR ERV1 372 664 0 627 296 50 92 chr9 139742341 139742658 -2528786 + L1M4 LINE L1 4405 4708 -1438 2184 108 0 10 chr9 139742681 139742978 -2528466 + AluSx SINE Alu 1 294 -18 2778 268 85 12 chr9 139742986 139744708 -2526736 + L1ME3 LINE L1 4085 5943 -219 781 259 15 15 chr9 139744711 139744985 -2526459 + L1MD1 LINE L1 3374 3647 -2499 1685 166 39 19 chr9 139744986 139745209 -2526235 + MLT2B1 LTR ERVL 1 218 -297 432 0 0 0 chr9 139745209 139745257 -2526187 + (TC)n Simple_repeat Simple_repeat 2 49 0 1685 166 39 19 chr9 139745257 139745453 -2525991 + MLT2B1 LTR ERVL 218 475 -40 318 235 59 0 chr9 139745453 139745538 -2525906 + L1MD1 LINE L1 3643 3732 -2414 * 381 233 139 79 chr9 139745534 139745749 -2525695 + L1ME3 LINE L1 5934 6161 -1 222 146 21 21 chr9 139746423 139746471 -2524973 + (CACCC)n Simple_repeat Simple_repeat 3 50 0 211 314 93 43 chr9 139747252 139747392 -2524052 - MIR SINE MIR -21 241 95 1770 226 45 57 chr9 139748207 139748890 -2522554 + L1MD1 LINE L1 4482 5156 -990 2957 212 30 25 chr9 139748998 139749808 -2521636 + L1MD1 LINE L1 5429 6242 0 188 312 91 0 chr9 139749934 139750011 -2521433 + L2 LINE L2 3210 3293 -20 328 350 34 0 chr9 139750125 139750242 -2521202 + L1MC/D LINE L1 5700 5820 -1988 671 51 0 0 chr9 139750310 139750414 -2521030 - AluSg/x SINE Alu 0 312 209 295 344 53 33 chr9 139750682 139750833 -2520611 - L3 LINE CR1 -193 1384 1231 391 247 22 0 chr9 139750883 139750972 -2520472 - L1MB1 LINE L1 -19 6149 6059 540 250 36 58 chr9 139751452 139751676 -2519768 - MER96B DNA MER1_type? 0 417 199 182 292 62 0 chr9 139752353 139752418 -2519026 + MIR SINE MIR 29 97 -165 2448 216 54 6 chr9 139752549 139753178 -2518266 + L1MB8 LINE L1 5520 6178 0 456 238 0 0 chr9 139755686 139755860 -2515584 + (CA)n Simple_repeat Simple_repeat 1 174 0 181 262 0 0 chr9 139756395 139756437 -2515007 + L2 LINE L2 3271 3312 -1 343 346 25 0 chr9 139758607 139758769 -2512675 + L1MD3 LINE L1 7058 7223 -772 1311 303 57 47 chr9 139758784 139759483 -2511961 + L1MC4a LINE L1 7102 7807 -1 984 356 55 3 chr9 139763076 139763187 -2508257 - HERV16 LTR ERVL -1906 3090 2986 2833 82 6 6 chr9 139763187 139763551 -2507893 + THE1B LTR MaLR 1 364 0 984 356 55 3 chr9 139763551 139764028 -2507416 - HERV16 LTR ERVL -2010 2986 2612 361 284 85 51 chr9 139764178 139764414 -2507030 - MLT1H1 LTR MaLR -311 244 1 2144 98 3 7 chr9 139765302 139765597 -2505847 - AluSx SINE Alu -16 296 3 457 303 7 0 chr9 139766233 139766378 -2505066 - MLT1A2 LTR MaLR 0 374 229 226 254 32 0 chr9 139766369 139766432 -2505012 - MLT1A2 LTR MaLR -317 79 15 * 589 212 36 30 chr9 139766672 139766837 -2504607 + L1MB3 LINE L1 5979 6144 -39 309 287 0 0 chr9 139766839 139767136 -2504308 + (GAATG)n Satellite Satellite 1 297 0 234 322 0 0 chr9 139766874 139767051 -2504393 + (CTAGG)n Simple_repeat Simple_repeat 4 180 0 * 1011 161 0 0 chr9 139767173 139767334 -2504110 + AluJb SINE Alu 135 295 -17 1079 148 0 16 chr9 139768349 139768888 -2502556 + (CACCAT)n Simple_repeat Simple_repeat 1 358 0 259 341 0 0 chr9 139769072 139769157 -2502287 - MIR SINE MIR -24 238 154 353 332 56 3 chr9 139769493 139769677 -2501767 - MIR3 SINE MIR -35 173 27 387 0 0 0 chr9 139770159 139770202 -2501242 + (CA)n Simple_repeat Simple_repeat 2 44 0 680 271 64 99 chr9 139770823 139771247 -2500197 + L1MB7 LINE L1 5776 6184 0 1997 120 41 0 chr9 139771258 139771549 -2499895 + AluSx SINE Alu 1 303 -9 239 321 0 27 chr9 139771560 139771672 -2499772 + L1ME LINE L1 5583 5691 -430 255 393 107 6 chr9 139772861 139773029 -2498415 - MIR SINE MIR -71 191 7 386 214 29 98 chr9 139773336 139773553 -2497891 - LTR16A LTR ERVL -65 392 179 1922 151 26 0 chr9 139774132 139774436 -2497008 - AluSx SINE Alu 0 312 1 1939 191 46 0 chr9 139775556 139775906 -2495538 - MER47A DNA MER2_type 0 366 1 1035 248 151 25 chr9 139776046 139776489 -2494955 + MLT1D LTR MaLR 1 499 -6 437 244 62 11 chr9 139776538 139776690 -2494754 + MIR3 SINE MIR 37 191 -43 387 339 8 0 chr9 139777672 139777802 -2493642 - MIR SINE MIR -46 216 86 192 298 0 0 chr9 139777958 139778005 -2493439 + L2 LINE L2 3267 3313 0 474 224 11 7 chr9 139778005 139778282 -2493162 + (TGGA)n Simple_repeat Simple_repeat 1 278 0 357 255 160 0 chr9 139779087 139779193 -2492251 - MIR SINE MIR -27 235 113 211 214 18 18 chr9 139779709 139779765 -2491679 - L2 LINE L2 -4 3268 3213 2347 83 3 3 chr9 139781867 139782179 -2489265 - AluSx SINE Alu 0 312 1 751 308 44 4 chr9 139782506 139782733 -2488711 - MIR SINE MIR -23 239 4 2089 112 0 7 chr9 139782815 139783111 -2488333 + AluSq SINE Alu 1 294 -19 243 276 40 0 chr9 139783208 139783284 -2488160 + L2 LINE L2 2921 2999 -314 266 253 67 0 chr9 139783417 139783492 -2487952 + L2 LINE L2 3151 3230 -42 330 257 76 49 chr9 139785468 139785612 -2485832 - MLT2C1 LTR ERVL 0 397 250 2286 84 6 3 chr9 139786322 139786633 -2484811 + AluSx SINE Alu 1 312 0 1770 160 0 31 chr9 139787541 139787860 -2483584 + AluJo SINE Alu 1 309 -3 379 320 22 18 chr9 139788593 139788934 -2482510 - L1M LINE L1 -745 5417 5075 298 284 109 45 chr9 139789328 139789529 -2481915 - MLT1L LTR MaLR -212 403 190 480 264 21 28 chr9 139789808 139789962 -2481482 - MIR SINE MIR -65 143 10 1453 203 20 17 chr9 139791209 139791558 -2479886 + MLT1B LTR MaLR 35 384 -6 181 336 48 29 chr9 139791759 139791863 -2479581 + MIR SINE MIR 157 262 0 435 202 136 56 chr9 139792399 139792612 -2478832 - MER33 DNA MER1_type -58 266 37 1617 151 61 7 chr9 139792659 139792819 -2478625 - AluJb SINE Alu -19 293 110 392 0 0 20 chr9 139792819 139792868 -2478576 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1617 151 61 7 chr9 139792868 139792985 -2478459 - AluJb SINE Alu -202 110 1 2276 93 0 0 chr9 139792994 139793294 -2478150 - AluSx SINE Alu -12 300 1 2048 57 0 19 chr9 139793316 139793580 -2477864 + L1PA4 LINE L1 5894 6152 -3 775 256 80 55 chr9 139794029 139794392 -2477052 - MLT1A2 LTR MaLR -2 372 1 1388 263 98 5 chr9 139795094 139795543 -2475901 + L1MB5 LINE L1 5649 6139 -35 258 276 13 0 chr9 139795537 139795613 -2475831 + L1MA10 LINE L1 6258 6334 0 * 233 146 0 0 chr9 139795609 139795650 -2475794 + L1MB5 LINE L1 6128 6168 -6 * 2190 103 0 3 chr9 139795828 139796130 -2475314 + AluSx SINE Alu 1 301 -11 236 108 0 0 chr9 139796132 139796169 -2475275 + Alu SINE Alu 85 121 -12 510 283 94 36 chr9 139796525 139796997 -2474447 + MLT1G LTR MaLR 37 543 -6 210 258 0 0 chr9 139797298 139797360 -2474084 + (CA)n Simple_repeat Simple_repeat 2 63 0 261 79 0 0 chr9 139797456 139797484 -2473960 + (TC)n Simple_repeat Simple_repeat 1 31 -7 1344 215 63 68 chr9 139797484 139797851 -2473593 + MLT1A1 LTR MaLR 1 365 0 261 79 0 0 chr9 139797851 139797860 -2473584 + (TC)n Simple_repeat Simple_repeat 30 38 0 275 111 19 0 chr9 139798630 139798684 -2472760 + MER31A LTR ERV1 431 485 0 2187 114 0 13 chr9 139799715 139800031 -2471413 + AluSx SINE Alu 1 312 0 256 308 22 0 chr9 139800520 139800611 -2470833 + (CA)n Simple_repeat Simple_repeat 1 93 0 2347 74 0 7 chr9 139800782 139801091 -2470353 - AluSc SINE Alu -2 307 1 273 152 0 0 chr9 139801461 139801507 -2469937 - L2 LINE L2 -4 3309 3264 507 229 86 43 chr9 139801749 139801827 -2469617 - MER20 DNA MER1_type 0 219 146 4143 120 8 26 chr9 139801827 139801925 -2469519 + MER41B LTR ERV1 2 100 -535 2179 72 41 0 chr9 139801925 139802090 -2469354 - AluY SINE Alu -9 302 118 333 0 0 0 chr9 139802090 139802127 -2469317 + (TG)n Simple_repeat Simple_repeat 2 38 0 2179 72 41 0 chr9 139802127 139802251 -2469193 - AluY SINE Alu -193 118 1 4143 120 8 26 chr9 139802251 139802673 -2468771 + MER41B LTR ERV1 100 510 -125 2142 98 26 10 chr9 139802673 139802980 -2468464 - AluSx SINE Alu 0 312 1 4143 120 8 26 chr9 139802980 139803101 -2468343 + MER41B LTR ERV1 510 632 -3 507 229 86 43 chr9 139803101 139803232 -2468212 - MER20 DNA MER1_type -73 146 1 2053 119 0 13 chr9 139804031 139804334 -2467110 + AluSx SINE Alu 1 299 -13 2716 154 50 69 chr9 139804364 139805019 -2466425 + LTR8A LTR ERV1 85 727 0 977 173 40 121 chr9 139805095 139805143 -2466301 - L1MA9 LINE L1 -4 6308 6258 2217 113 0 0 chr9 139805143 139805444 -2466000 + AluSx SINE Alu 1 301 -11 977 173 40 121 chr9 139805444 139805624 -2465820 - L1MA9 LINE L1 -54 6258 6115 2863 116 125 82 chr9 139805624 139806007 -2465437 + MER4B LTR ERV1 1 419 -191 2331 60 13 0 chr9 139806007 139806305 -2465139 - AluSx SINE Alu -10 302 1 2863 116 125 82 chr9 139806305 139806506 -2464938 + MER4B LTR ERV1 419 610 0 977 173 40 121 chr9 139806506 139806622 -2464822 - L1MA9 LINE L1 -197 6115 5991 183 42 0 0 chr9 139806724 139806748 -2464696 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2175 113 0 0 chr9 139806752 139807043 -2464401 + AluSp SINE Alu 1 291 -22 189 0 0 0 chr9 139807070 139807091 -2464353 + (A)n Simple_repeat Simple_repeat 1 21 0 2857 108 2 0 chr9 139807236 139807671 -2463773 + MER41B LTR ERV1 1 436 -199 1478 75 0 66 chr9 139807683 139807895 -2463549 - AluY SINE Alu -113 198 1 1014 167 0 32 chr9 139807910 139808096 -2463348 + AluSg/x SINE Alu 122 301 -11 757 294 151 89 chr9 139808104 139808552 -2462892 + HAL1b LINE L1 285 704 -904 1843 102 0 0 chr9 139808552 139808797 -2462647 - AluSx SINE Alu -67 245 1 757 294 151 89 chr9 139808797 139809289 -2462155 + HAL1b LINE L1 704 1201 -407 356 326 120 43 chr9 139809282 139809346 -2462098 + HAL1b LINE L1 1025 1083 -525 * 2359 87 3 0 chr9 139809346 139809656 -2461788 + AluY SINE Alu 1 311 0 356 326 120 43 chr9 139809656 139809775 -2461669 + HAL1b LINE L1 1083 1222 -386 836 209 75 26 chr9 139809946 139810329 -2461115 + L1MA9 LINE L1 5814 6311 -1 476 295 47 34 chr9 139810682 139811162 -2460282 + L1ME1 LINE L1 1104 1595 -4801 2038 141 3 0 chr9 139811162 139811461 -2459983 + AluSq SINE Alu 1 300 -13 543 242 56 0 chr9 139811506 139811704 -2459740 + L1ME1 LINE L1 2286 2494 -3721 2075 136 3 0 chr9 139811704 139812006 -2459438 + AluSx SINE Alu 1 303 -9 315 167 0 69 chr9 139812007 139812079 -2459365 + L1MB7 LINE L1 6108 6174 -10 2353 103 0 3 chr9 139812250 139812561 -2458883 + AluSg SINE Alu 1 310 0 328 327 84 0 chr9 139812645 139812752 -2458692 + L1ME1 LINE L1 3833 3948 -2267 258 263 149 47 chr9 139812780 139813081 -2458363 + L1ME1 LINE L1 3905 4236 -1979 2162 224 47 34 chr9 139813093 139813122 -2458322 + L1ME1 LINE L1 5111 5138 -1097 2093 99 34 81 chr9 139813122 139813180 -2458264 - THE1B LTR MaLR 0 364 305 2296 90 21 0 chr9 139813180 139813470 -2457974 - AluSp SINE Alu -17 296 1 2093 99 34 81 chr9 139813470 139813793 -2457651 - THE1B LTR MaLR -59 305 1 2162 224 47 34 chr9 139813793 139814092 -2457352 + L1ME1 LINE L1 5138 5431 -804 2384 74 0 32 chr9 139814092 139814404 -2457040 + AluY SINE Alu 1 302 -9 2162 224 47 34 chr9 139814404 139814928 -2456516 + L1ME1 LINE L1 5431 5972 -263 514 333 58 23 chr9 139815010 139815134 -2456310 + L1MEc LINE L1 4876 4994 -1221 2283 94 10 3 chr9 139815134 139815432 -2456012 - AluSq SINE Alu -13 300 1 514 333 58 23 chr9 139815432 139815655 -2455789 + L1MEc LINE L1 4994 5235 -980 2433 87 3 0 chr9 139815691 139815991 -2455453 + AluY SINE Alu 1 301 -10 1563 178 8 72 chr9 139815998 139816398 -2455046 + L1MB3 LINE L1 3850 4223 -1923 1288 137 5 0 chr9 139816406 139816596 -2454848 + AluSg/x SINE Alu 119 309 -1 4479 199 26 20 chr9 139816622 139817643 -2453801 + L1MB3 LINE L1 4273 5313 -867 2201 104 3 10 chr9 139817643 139817940 -2453504 + AluSx SINE Alu 12 306 -6 4479 199 26 20 chr9 139817940 139818077 -2453367 + L1MB3 LINE L1 5313 5448 -732 858 229 0 21 chr9 139818077 139818265 -2453179 - LTR2 LTR ERV1 0 449 266 263 273 30 83 chr9 139818325 139818457 -2452987 - LTR2 LTR ERV1 -324 125 1 372 203 0 0 chr9 139818457 139818531 -2452913 - Harlequin LTR ERV1 -1 6895 6822 361 197 0 0 chr9 139818527 139818588 -2452856 - Harlequin LTR ERV1 -1369 5527 5467 * 574 189 19 0 chr9 139818575 139818681 -2452763 - HERVE LTR ERV1 -1791 6022 5915 13820 76 5 17 chr9 139818709 139820580 -2450864 - HERVE LTR ERV1 -1991 5822 3973 3856 73 7 13 chr9 139820580 139821128 -2450316 + LTR6B LTR ERV1 1 545 -13 347 107 54 0 chr9 139821113 139821169 -2450275 + LTR6A LTR ERV1 506 564 0 * 29600 78 7 3 chr9 139821169 139825133 -2446311 - HERVE LTR ERV1 -3837 3976 1 786 189 49 32 chr9 139825133 139825318 -2446126 - LTR2B LTR ERV1 0 490 303 287 258 23 76 chr9 139825353 139825485 -2445959 - LTR2 LTR ERV1 -324 125 1 3296 187 31 37 chr9 139825485 139825565 -2445879 + L1MB3 LINE L1 5445 5524 -659 1778 144 60 7 chr9 139825565 139825850 -2445594 + AluJo SINE Alu 1 300 -12 3296 187 31 37 chr9 139825850 139826154 -2445290 + L1MB3 LINE L1 5524 5828 -355 2574 53 7 0 chr9 139826154 139826454 -2444990 + AluY SINE Alu 1 302 -9 3296 187 31 37 chr9 139826454 139826802 -2444642 + L1MB3 LINE L1 5828 6174 -9 2253 120 0 0 chr9 139826802 139827102 -2444342 - AluSx SINE Alu -12 300 1 272 304 0 61 chr9 139827135 139827349 -2444095 + L1ME LINE L1 5157 5357 -789 249 356 0 16 chr9 139827370 139827537 -2443907 + G-rich Low_complexity Low_complexity 1 164 0 440 342 6 8 chr9 139827567 139827793 -2443651 + G-rich Low_complexity Low_complexity 1 225 0 1368 144 22 22 chr9 139828508 139828638 -2442806 + AluJo SINE Alu 3 135 -177 2400 100 3 0 chr9 139828638 139828938 -2442506 + AluSp SINE Alu 1 301 -12 1368 144 22 22 chr9 139828938 139829036 -2442408 + AluJo SINE Alu 134 231 -81 198 0 0 0 chr9 139829726 139829748 -2441696 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 608 142 0 0 chr9 139829760 139829866 -2441578 - AluSg/x SINE Alu 0 309 204 1817 128 44 54 chr9 139829907 139830204 -2441240 - AluSx SINE Alu -18 294 1 2193 99 3 7 chr9 139830370 139830664 -2440780 + AluSg SINE Alu 1 293 -17 2178 129 30 0 chr9 139831477 139831780 -2439664 - AluSx SINE Alu 0 312 1 2551 70 0 3 chr9 139832028 139832330 -2439114 + AluY SINE Alu 1 301 -10 1192 203 0 18 chr9 139832781 139833008 -2438436 + AluSx SINE Alu 62 284 -28 1400 113 5 0 chr9 139833091 139833277 -2438167 + AluY SINE Alu 116 302 -9 2408 81 0 0 chr9 139833685 139833968 -2437476 - AluSg SINE Alu -27 283 1 228 35 0 0 chr9 139834090 139834119 -2437325 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1045 252 28 88 chr9 139834132 139834529 -2436915 + L1ME LINE L1 5354 5726 -436 1288 134 223 9 chr9 139834720 139834944 -2436500 + AluSg1 SINE Alu 23 294 -15 353 254 24 16 chr9 139834972 139835098 -2436346 - LTR16C LTR ERVL -1 490 364 2417 82 0 3 chr9 139835112 139835405 -2436039 - AluY SINE Alu -19 292 1 290 256 22 11 chr9 139836238 139836328 -2435116 - MLT1H-int LTR MaLR -1276 95 5 784 211 130 29 chr9 139836332 139836578 -2434866 - MLT1H LTR MaLR 0 549 279 305 207 23 23 chr9 139837314 139837401 -2434043 + LTR33 LTR ERVL 90 176 -345 408 333 8 8 chr9 139837842 139837971 -2433473 + G-rich Low_complexity Low_complexity 4 132 0 2403 89 0 13 chr9 139839530 139839844 -2431600 - AluY SINE Alu -1 310 1 4987 95 3 26 chr9 139839850 139840536 -2430908 - L1PA13 LINE L1 -3 6160 5492 2152 110 38 0 chr9 139840536 139840826 -2430618 - AluSx SINE Alu -11 301 1 4987 95 3 26 chr9 139840826 139840904 -2430540 - L1PA13 LINE L1 -671 5492 5414 354 138 0 0 chr9 139840904 139840962 -2430482 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 2330 113 3 0 chr9 139840963 139841274 -2430170 - AluSp SINE Alu -1 312 1 460 127 0 0 chr9 139841274 139841345 -2430099 - L1PA13 LINE L1 -734 5427 5357 180 0 0 0 chr9 139841350 139841370 -2430074 + (TATG)n Simple_repeat Simple_repeat 4 23 0 353 155 0 0 chr9 139841401 139841459 -2429985 - L1PA13 LINE L1 -1258 4888 4831 2115 268 39 25 chr9 139842098 139842823 -2428621 - L1ME1 LINE L1 -6 6160 5426 987 177 46 39 chr9 139842878 139842999 -2428445 + L1MC4 LINE L1 6974 7093 -949 2415 83 3 0 chr9 139842999 139843289 -2428155 + AluSp SINE Alu 1 291 -22 987 177 46 39 chr9 139843289 139843427 -2428017 + L1MC4 LINE L1 7093 7235 -807 433 237 34 13 chr9 139843427 139843580 -2427864 + L1MC4 LINE L1 7885 7994 -1 239 262 48 19 chr9 139844073 139844176 -2427268 - MIR3 SINE MIR -26 182 77 1013 161 40 36 chr9 139844251 139844500 -2426944 - L1MB8 LINE L1 -5 6173 5924 23 0 0 0 chr9 139844562 139844585 -2426859 + AT_rich Low_complexity Low_complexity 1 23 0 312 233 97 97 chr9 139845481 139845541 -2425903 + HAL1 LINE L1 1592 1651 -856 2205 172 110 21 chr9 139845541 139846052 -2425392 + LTR38 LTR ERV1 1 556 0 312 233 97 97 chr9 139846052 139846113 -2425331 + HAL1 LINE L1 1651 1716 -791 1879 118 0 0 chr9 139846113 139846358 -2425086 + AluSx SINE Alu 1 245 -67 312 233 97 97 chr9 139846358 139846411 -2425033 + HAL1 LINE L1 1715 1767 -740 2543 79 0 0 chr9 139847764 139848069 -2423375 - AluSc SINE Alu -4 305 1 2109 141 3 0 chr9 139848069 139848367 -2423077 - AluJo SINE Alu -13 299 1 227 320 50 30 chr9 139848612 139848812 -2422632 - L1MC5 LINE L1 -431 7530 7327 2443 63 0 13 chr9 139848852 139849155 -2422289 - AluY SINE Alu -12 299 1 550 197 165 94 chr9 139849223 139849283 -2422161 - L1MC5 LINE L1 -751 7210 7156 1647 116 116 0 chr9 139849283 139849524 -2421920 - AluSg SINE Alu -3 307 39 550 197 165 94 chr9 139849524 139849772 -2421672 - L1MC5 LINE L1 -805 7156 6880 4229 107 21 51 chr9 139850122 139850834 -2420610 + LTR8 LTR ERV1 1 691 0 1216 172 15 135 chr9 139851080 139851278 -2420166 + MER4A LTR ERV1 2 60 -604 2276 72 11 0 chr9 139851278 139851555 -2419889 - AluSq SINE Alu -13 300 21 1216 172 15 135 chr9 139851555 139851881 -2419563 + MER4A LTR ERV1 60 423 -241 261 284 21 11 chr9 139851894 139851989 -2419455 + MER4C LTR ERV1 276 371 -94 367 193 24 24 chr9 139852057 139852140 -2419304 + MER4C LTR ERV1 383 465 0 2217 86 28 0 chr9 139852515 139852806 -2418638 + AluSx SINE Alu 1 299 -13 2225 103 3 0 chr9 139852852 139853144 -2418300 + AluSg SINE Alu 1 293 -17 1672 175 3 21 chr9 139854748 139855034 -2416410 - AluJo SINE Alu -31 281 1 349 278 56 33 chr9 139855715 139855895 -2415549 + LTR16A LTR ERVL 161 344 -106 2004 92 0 79 chr9 139856761 139857091 -2414353 - AluSq SINE Alu 0 322 16 1430 106 4 71 chr9 139857728 139857954 -2413490 - AluSx SINE Alu -101 211 1 24 0 0 0 chr9 139858514 139858538 -2412906 + AT_rich Low_complexity Low_complexity 1 24 0 2038 123 10 16 chr9 139858851 139859160 -2412284 + AluJb SINE Alu 1 307 -5 2255 103 0 3 chr9 139859286 139859578 -2411866 - AluSx SINE Alu -21 291 1 495 271 110 43 chr9 139859644 139860060 -2411384 + L1ME LINE L1 5271 5715 -406 51 65 0 0 chr9 139861069 139861162 -2410282 + GC_rich Low_complexity Low_complexity 1 93 0 24 32 0 0 chr9 139861271 139861302 -2410142 + GC_rich Low_complexity Low_complexity 1 31 0 201 200 0 40 chr9 139861321 139861396 -2410048 + (CGGGG)n Simple_repeat Simple_repeat 4 75 0 30 93 0 0 chr9 139861401 139861487 -2409957 + GC_rich Low_complexity Low_complexity 1 86 0 309 225 22 51 chr9 139861491 139861669 -2409775 + G-rich Low_complexity Low_complexity 3 175 0 21 0 0 0 chr9 139861823 139861844 -2409600 + GC_rich Low_complexity Low_complexity 1 21 0 2206 129 3 0 chr9 139862751 139863062 -2408382 - AluSx SINE Alu 0 312 1 2435 90 0 0 chr9 139863141 139863440 -2408004 - AluSx SINE Alu -13 299 1 2285 109 3 6 chr9 139864499 139864812 -2406632 - AluSx SINE Alu 0 312 1 333 299 57 22 chr9 139865720 139865872 -2405572 - MIR SINE MIR -64 144 37 2309 96 0 0 chr9 139870482 139870785 -2400659 + AluSq SINE Alu 1 303 -10 2068 116 7 3 chr9 139871539 139871842 -2399602 - AluSx SINE Alu -8 304 1 2167 123 10 0 chr9 139873790 139874098 -2397346 - AluSx SINE Alu -1 311 1 189 0 0 0 chr9 139874192 139874213 -2397231 + (T)n Simple_repeat Simple_repeat 1 21 0 2213 98 0 22 chr9 139875203 139875521 -2395923 - AluSx SINE Alu -1 311 1 276 213 53 0 chr9 139875960 139876035 -2395409 + L1ME4a LINE L1 6043 6121 0 21 57 0 0 chr9 139876171 139876206 -2395238 + AT_rich Low_complexity Low_complexity 1 35 0 386 338 38 0 chr9 139877391 139877524 -2393920 + MIR SINE MIR 14 151 -111 2128 85 0 7 chr9 139877554 139877836 -2393608 + AluSq SINE Alu 1 280 -33 709 200 61 11 chr9 139878065 139878245 -2393199 - L1MC2 LINE L1 -19 6325 6137 294 214 14 0 chr9 139878236 139878306 -2393138 - L1MC1 LINE L1 -225 6108 6038 * 2294 83 3 3 chr9 139878316 139878618 -2392826 - AluSq SINE Alu -11 302 1 1801 160 6 16 chr9 139878912 139879246 -2392198 - AluJb SINE Alu 0 312 1 302 324 49 0 chr9 139880686 139880788 -2390656 + MIR SINE MIR 87 193 -69 213 376 170 0 chr9 139883830 139884229 -2387215 - L2 LINE L2 -584 2730 2264 214 319 128 46 chr9 139884233 139884515 -2386929 - L2 LINE L2 -1224 2090 1786 266 385 50 0 chr9 139889173 139889334 -2382110 + MIR SINE MIR 59 227 -35 226 233 46 73 chr9 139889775 139889877 -2381567 - MIR SINE MIR -66 142 44 613 280 24 95 chr9 139890321 139890657 -2380787 + L1MB7 LINE L1 564 875 -5667 773 210 85 41 chr9 139890701 139891067 -2380377 + L1MB7 LINE L1 1202 1583 -4959 * 1056 222 18 72 chr9 139891057 139891379 -2380065 + L1MB7 LINE L1 2519 2815 -3829 2150 119 0 13 chr9 139891379 139891689 -2379755 - AluSx SINE Alu -6 306 1 1056 222 18 72 chr9 139891689 139891851 -2379593 + L1MB7 LINE L1 2815 2984 -3660 224 214 14 29 chr9 139891876 139891946 -2379498 + A-rich Low_complexity Low_complexity 2 70 0 2981 220 69 50 chr9 139891947 139893609 -2377835 + L1MB7 LINE L1 4655 6373 -309 2165 104 3 13 chr9 139893609 139893916 -2377528 + AluSx SINE Alu 1 304 -8 2981 220 69 50 chr9 139893916 139894220 -2377224 + L1MB7 LINE L1 6373 6670 -12 216 0 0 0 chr9 139894445 139894469 -2376975 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 180 387 21 0 chr9 139896142 139896235 -2375209 + MIR SINE MIR 81 175 -87 705 265 110 14 chr9 139898623 139898978 -2372466 - MER69 DNA AcHobo 0 2526 2138 230 345 86 5 chr9 139898985 139899182 -2372262 - MER69 DNA AcHobo -1697 829 617 504 368 77 61 chr9 139899415 139900136 -2371308 - L1MEd LINE L1 -3228 3416 2694 1962 134 43 0 chr9 139900436 139900735 -2370709 - AluSx SINE Alu 0 312 1 295 340 72 31 chr9 139900749 139901196 -2370248 - HAL1 LINE L1 -860 1647 1183 623 226 0 6 chr9 139901215 139901396 -2370048 + (TG)n Simple_repeat Simple_repeat 1 180 0 709 309 74 68 chr9 139901404 139901961 -2369483 - L1MEd LINE L1 -5015 1600 967 1136 214 91 18 chr9 139908672 139909069 -2362375 - MER74C LTR ERVL -3 457 32 1456 127 5 0 chr9 139909081 139909301 -2362143 + AluJo SINE Alu 1 221 -91 783 336 80 35 chr9 139909928 139910143 -2361301 - L1MEc LINE L1 -4451 1810 1606 559 92 0 0 chr9 139910143 139910219 -2361225 - MADE1 DNA Mariner 0 80 5 783 336 80 35 chr9 139910219 139910344 -2361100 - L1MEc LINE L1 -4655 1606 1488 1975 116 25 0 chr9 139910344 139910684 -2360760 + AluSx SINE Alu 1 347 0 783 336 80 35 chr9 139910684 139911053 -2360391 - L1MEc LINE L1 -4773 1488 1067 610 193 0 28 chr9 139911054 139911163 -2360281 - FRAM SINE Alu -9 167 62 557 326 64 5 chr9 139911166 139911353 -2360091 - L1MEc LINE L1 -5054 1016 819 1540 249 67 49 chr9 139911376 139911510 -2359934 - L1MEc LINE L1 -5386 684 554 2092 129 0 0 chr9 139911510 139911819 -2359625 - AluSq SINE Alu -4 309 1 1540 249 67 49 chr9 139911819 139912354 -2359090 - L1MEc LINE L1 -5516 554 3 364 310 27 27 chr9 139914695 139914882 -2356562 - ERVL LTR ERVL -705 5059 4873 320 197 86 92 chr9 139914907 139915059 -2356385 + L1M4 LINE L1 3005 3155 -2991 536 276 55 12 chr9 139915124 139915287 -2356157 + LTR41 LTR ERVL 1 170 -603 319 295 36 30 chr9 139915494 139915660 -2355784 + LTR41 LTR ERVL 584 750 -23 1513 241 13 58 chr9 139915671 139916123 -2355321 + MER74A LTR ERVL 1 432 -126 2366 194 90 28 chr9 139916402 139916722 -2354722 - MER67B LTR ERV1 -9 652 353 2122 122 0 25 chr9 139916722 139917042 -2354402 - AluSx SINE Alu 0 312 1 2366 194 90 28 chr9 139917042 139917335 -2354109 - MER67B LTR ERV1 -308 353 1 1765 162 45 38 chr9 139918414 139918810 -2352634 - MLT1D LTR MaLR -106 399 1 400 167 15 0 chr9 139918813 139918879 -2352565 - MLT1D LTR MaLR -438 67 1 326 222 16 0 chr9 139918882 139918945 -2352499 - MLT1D LTR MaLR -438 67 4 4307 185 37 16 chr9 139919103 139920190 -2351254 - L1MB7 LINE L1 0 6184 5069 2078 123 3 0 chr9 139920190 139920490 -2350954 + AluSx SINE Alu 1 301 -11 4307 185 37 16 chr9 139920490 139920673 -2350771 - L1MB7 LINE L1 -1115 5069 4891 457 331 51 24 chr9 139920730 139921105 -2350339 - L1MEc LINE L1 -5895 501 117 726 311 86 12 chr9 139921190 139921712 -2349732 + L2 LINE L2 2606 3158 -155 422 277 15 8 chr9 139922277 139922407 -2349037 - LTR41 LTR ERVL -641 132 2 298 297 36 43 chr9 139922411 139922549 -2348895 + L2 LINE L2 3158 3294 -19 399 240 20 0 chr9 139922747 139922847 -2348597 - L1MD2 LINE L1 -2 6357 6256 * 2627 245 59 80 chr9 139922838 139923209 -2348235 - L1MD1 LINE L1 -252 6059 5682 264 59 0 0 chr9 139923209 139923243 -2348201 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2627 245 59 80 chr9 139923243 139924036 -2347408 - L1MD1 LINE L1 -629 5682 4874 1081 130 6 0 chr9 139924036 139924205 -2347239 + AluSg/x SINE Alu 135 304 -8 2627 245 59 80 chr9 139924205 139924878 -2346566 - L1MD1 LINE L1 -1437 4874 4130 3931 86 29 9 chr9 139924878 139925423 -2346021 + LTR38 LTR ERV1 1 556 0 2627 245 59 80 chr9 139925423 139925568 -2345876 - L1MD1 LINE L1 -2181 4130 3984 2751 10 0 6 chr9 139925968 139926281 -2345163 + AluYa5 SINE Alu 1 311 0 214 246 0 55 chr9 139930513 139930696 -2340748 + (CTGGGG)n Simple_repeat Simple_repeat 5 177 0 409 230 11 56 chr9 139934413 139934591 -2336853 + C-rich Low_complexity Low_complexity 2 171 0 305 309 83 33 chr9 139935032 139935213 -2336231 - MIR SINE MIR -29 233 44 347 317 138 20 chr9 139935390 139935636 -2335808 - L1MD1 LINE L1 -4988 1230 956 2060 220 113 26 chr9 139935644 139935994 -2335450 - L1MB5 LINE L1 -8 6166 5745 2152 112 0 10 chr9 139935994 139936297 -2335147 - AluSx SINE Alu -12 300 1 2060 220 113 26 chr9 139936297 139936519 -2334925 - L1MB5 LINE L1 -429 5745 5544 694 246 27 39 chr9 139936519 139936779 -2334665 - L1MD1 LINE L1 -5375 1021 765 630 243 217 7 chr9 139936806 139937201 -2334243 + MLT1F1 LTR MaLR 56 535 -7 375 290 90 15 chr9 139937209 139937409 -2334035 - L1MD1 LINE L1 -5635 761 547 439 275 93 5 chr9 139937625 139937818 -2333626 - L1MD1 LINE L1 -6179 217 8 2001 241 129 28 chr9 139937820 139937990 -2333454 - L1MD2 LINE L1 -17 6342 6191 306 0 0 0 chr9 139937990 139938024 -2333420 + (TG)n Simple_repeat Simple_repeat 1 34 0 2001 241 129 28 chr9 139938024 139938179 -2333265 - L1MD2 LINE L1 -168 6191 6053 2427 58 0 6 chr9 139938179 139938492 -2332952 - AluY SINE Alu 0 311 1 2001 241 129 28 chr9 139938492 139938840 -2332604 - L1MD2 LINE L1 -306 6053 5600 1512 114 0 5 chr9 139938840 139939060 -2332384 - AluSg/x SINE Alu -2 308 90 750 111 0 0 chr9 139939165 139939264 -2332180 + FLAM_C SINE Alu 20 118 -25 22 0 0 0 chr9 139939274 139939296 -2332148 + AT_rich Low_complexity Low_complexity 1 22 0 397 246 54 78 chr9 139939299 139939466 -2331978 - L1MD2 LINE L1 -650 5592 5430 1519 224 34 41 chr9 139939508 139939807 -2331637 - L1MB5 LINE L1 -743 5403 5201 2176 112 3 3 chr9 139939807 139940119 -2331325 - AluSx SINE Alu 0 312 1 1519 224 34 41 chr9 139940119 139940428 -2331016 - L1MB5 LINE L1 -945 5201 4891 1117 101 0 35 chr9 139940770 139940939 -2330505 - AluSg/x SINE Alu 0 310 148 748 253 35 0 chr9 139941216 139941386 -2330058 + MER41D LTR ERV1 382 557 0 1144 288 70 88 chr9 139941386 139941661 -2329783 - L1MB5 LINE L1 -1253 4893 4615 1931 140 0 0 chr9 139941661 139941946 -2329498 + AluSx SINE Alu 5 289 -23 1144 288 70 88 chr9 139941946 139942499 -2328945 - L1MB5 LINE L1 -1531 4615 4080 510 274 0 0 chr9 139944643 139944822 -2326622 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 492 289 0 0 chr9 139944806 139944986 -2326458 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 * 22 0 0 0 chr9 139945156 139945178 -2326266 + AT_rich Low_complexity Low_complexity 1 22 0 2157 101 3 22 chr9 139945925 139946243 -2325201 - AluSx SINE Alu 0 312 1 2057 107 0 0 chr9 139947605 139947885 -2323559 - AluSc SINE Alu -7 302 23 351 295 84 48 chr9 139948452 139948618 -2322826 + L1M4 LINE L1 2995 3166 -2980 2065 105 0 16 chr9 139949178 139949505 -2321939 + AluSx SINE Alu 3 324 0 354 337 75 16 chr9 139949859 139950046 -2321398 + L1MC4a LINE L1 5826 6023 -1785 234 261 59 26 chr9 139950069 139950222 -2321222 + L1MC4a LINE L1 6074 6231 -1577 1769 252 43 49 chr9 139950964 139951705 -2319739 - L1MB5 LINE L1 -2482 3664 2928 789 185 8 0 chr9 139951705 139951835 -2319609 - FLAM_C SINE Alu -11 132 2 351 225 90 22 chr9 139951836 139951925 -2319519 - L1MB5 LINE L1 -3187 2959 2865 933 172 185 53 chr9 139951925 139952227 -2319217 + MER4A LTR ERV1 1 342 -322 496 158 242 8 chr9 139952293 139952413 -2319031 + MER4C LTR ERV1 300 447 -18 865 289 138 0 chr9 139952432 139952837 -2318607 - L1MB5 LINE L1 -3278 2868 2408 349 280 64 0 chr9 139952880 139953005 -2318439 - L1M LINE L1 -2422 5386 5254 1612 163 71 39 chr9 139953041 139953379 -2318065 - LTR10A LTR ERV1 -63 546 198 438 128 39 0 chr9 139953492 139953594 -2317850 + (TGGA)n Simple_repeat Simple_repeat 3 108 0 209 146 21 0 chr9 139953707 139953755 -2317689 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 794 153 23 6 chr9 139953803 139953980 -2317464 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 4106 115 42 9 chr9 139953983 139954619 -2316825 - MER51D LTR ERV1 0 657 1 992 140 0 6 chr9 139954631 139954809 -2316635 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 457 195 0 16 chr9 139954825 139954953 -2316491 + (TCCA)n Simple_repeat Simple_repeat 1 126 0 2287 93 0 0 chr9 139955032 139955374 -2316070 - AluY SINE Alu 0 342 1 1816 91 107 0 chr9 139957033 139957296 -2314148 + AluSq SINE Alu 1 291 -22 273 128 0 0 chr9 139958299 139958346 -2313098 + (TC)n Simple_repeat Simple_repeat 2 48 0 1605 174 0 24 chr9 139958347 139958645 -2312799 - AluJo SINE Alu -21 291 1 503 179 9 0 chr9 139959449 139959555 -2311889 + (TCCA)n Simple_repeat Simple_repeat 1 107 0 725 193 0 6 chr9 139959583 139959764 -2311680 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 422 211 10 0 chr9 139959791 139959895 -2311549 + (TCCA)n Simple_repeat Simple_repeat 3 107 0 692 199 0 6 chr9 139959929 139960110 -2311334 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 410 211 10 0 chr9 139960137 139960241 -2311203 + (TCCA)n Simple_repeat Simple_repeat 3 107 0 692 217 31 8 chr9 139960275 139960939 -2310505 + (TCCA)n Simple_repeat Simple_repeat 1 679 0 207 167 0 0 chr9 139961006 139961048 -2310396 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 388 234 30 0 chr9 139961073 139961240 -2310204 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 195 173 82 0 chr9 139961283 139961393 -2310051 + (TCCA)n Simple_repeat Simple_repeat 4 122 0 301 267 25 58 chr9 139961398 139961518 -2309926 - L2 LINE L2 0 3313 3198 189 330 36 0 chr9 139961851 139961945 -2309499 - MIR SINE MIR -73 135 81 223 289 36 0 chr9 139962618 139962701 -2308743 - L2 LINE L2 -194 3078 2993 2183 139 0 0 chr9 139962967 139963304 -2308140 + MER1A DNA MER1_type 182 518 -11 262 302 0 0 chr9 139963370 139963456 -2307988 + (GAGTG)n Simple_repeat Simple_repeat 3 88 0 3126 156 41 2 chr9 139963813 139964320 -2307124 - MER1A DNA MER1_type 0 527 1 209 168 10 50 chr9 139965831 139965932 -2305512 + (CACCC)n Simple_repeat Simple_repeat 3 99 0 2337 87 0 0 chr9 139966973 139967273 -2304171 + AluY SINE Alu 1 300 -11 436 226 49 43 chr9 139967920 139968084 -2303360 + MLT1D LTR MaLR 269 433 -72 599 195 153 26 chr9 139968121 139968311 -2303133 - MLT1D LTR MaLR -17 488 275 351 0 0 0 chr9 139970907 139970946 -2300498 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 305 191 34 22 chr9 139971076 139971165 -2300279 + (CACCC)n Simple_repeat Simple_repeat 5 94 0 2337 87 0 0 chr9 139972206 139972506 -2298938 + AluY SINE Alu 1 300 -11 456 213 49 43 chr9 139973153 139973317 -2298127 + MLT1D LTR MaLR 269 433 -72 599 195 153 26 chr9 139973354 139973544 -2297900 - MLT1D LTR MaLR -17 488 275 351 0 0 0 chr9 139977239 139977278 -2294166 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 329 52 24 180 chr9 139979830 139980041 -2291403 + (CTGGGG)n Simple_repeat Simple_repeat 1 178 0 309 348 56 19 chr9 139980203 139980364 -2291080 + L1M4 LINE L1 3664 3830 -2316 333 316 32 74 chr9 139980536 139980726 -2290718 + L1M4 LINE L1 3324 3505 -2641 581 322 86 53 chr9 139980817 139981000 -2290444 + L1M4 LINE L1 3649 3847 -2299 2055 130 0 0 chr9 139981000 139981285 -2290159 + AluSx SINE Alu 1 285 -27 581 322 86 53 chr9 139981285 139981402 -2290042 + L1M4 LINE L1 3847 3959 -2187 372 318 18 68 chr9 139981413 139981633 -2289811 - MLT1I LTR MaLR -1 408 200 516 286 22 31 chr9 139981745 139981969 -2289475 + L1M4 LINE L1 3967 4188 -1958 2512 265 4 26 chr9 139981979 139982817 -2288627 + L1ME1 LINE L1 3248 4066 -2080 838 220 35 18 chr9 139982817 139983044 -2288400 - MLT1A2 LTR MaLR 0 374 144 1823 143 9 38 chr9 139983044 139983387 -2288057 + MER72 LTR ERV1 1 333 -389 1489 147 39 0 chr9 139983394 139983653 -2287791 + MER72 LTR ERV1 454 722 0 540 175 14 21 chr9 139984191 139984334 -2287110 + LTR49-int LTR ERV1 1054 1195 -5136 399 222 0 0 chr9 139984343 139984415 -2287029 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 355 165 0 0 chr9 139984418 139984497 -2286947 + LTR49-int LTR ERV1 1839 1917 -2963 1358 172 19 117 chr9 139984618 139984639 -2286805 + LTR49-int LTR ERV1 1744 1765 -4181 2426 90 19 53 chr9 139984639 139985016 -2286428 + THE1B LTR MaLR 1 364 0 1358 172 19 117 chr9 139985016 139985314 -2286130 + LTR49-int LTR ERV1 1765 2005 -3941 2232 106 3 3 chr9 139985314 139985616 -2285828 + AluSc SINE Alu 1 302 -7 1358 172 19 117 chr9 139985616 139985767 -2285677 + LTR49-int LTR ERV1 2005 2169 -3777 1311 266 18 36 chr9 139985767 139986271 -2285173 + L1ME1 LINE L1 4165 4659 -1487 501 205 0 96 chr9 139986406 139986572 -2284872 - L1M4 LINE L1 -1794 4352 4203 962 239 12 88 chr9 139986577 139987067 -2284377 + L1ME1 LINE L1 4777 5229 -917 717 179 152 0 chr9 139987068 139987219 -2284225 - MLT1A2 LTR MaLR -252 174 1 734 243 155 29 chr9 139987219 139987528 -2283916 + L1ME1 LINE L1 5555 5902 -264 607 198 17 15 chr9 139987554 139987723 -2283721 + L1ME1 LINE L1 5992 6162 -2 1149 274 125 45 chr9 139987731 139988012 -2283432 + L1M4 LINE L1 4432 4689 -1457 2150 121 3 10 chr9 139988012 139988325 -2283119 + AluSx SINE Alu 1 311 -1 1149 274 125 45 chr9 139988325 139988536 -2282908 + L1M4 LINE L1 4689 4882 -1264 2099 133 0 13 chr9 139988536 139988845 -2282599 - AluSx SINE Alu -7 305 1 1149 274 125 45 chr9 139988845 139989125 -2282319 + L1M4 LINE L1 4882 5267 -879 846 124 8 8 chr9 139989204 139989333 -2282111 + FLAM_C SINE Alu 1 129 -14 2118 112 23 0 chr9 139989359 139989488 -2281956 + AluSq SINE Alu 1 126 -187 204 67 0 0 chr9 139989488 139989518 -2281926 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 2118 112 23 0 chr9 139989518 139989692 -2281752 + AluSq SINE Alu 126 311 -2 273 29 0 0 chr9 139990427 139990461 -2280983 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1683 120 28 4 chr9 139990464 139990714 -2280730 - AluSx SINE Alu -15 297 42 251 140 20 0 chr9 139991837 139991887 -2279557 + GA-rich Low_complexity Low_complexity 2 52 0 612 220 0 0 chr9 139992661 139992779 -2278665 + AluJo SINE Alu 1 118 -184 2141 81 3 52 chr9 139992784 139993094 -2278350 - AluSx SINE Alu -17 295 1 357 345 103 47 chr9 139996852 139997400 -2274044 + L1M4c LINE L1 815 1502 -4882 482 318 6 0 chr9 139998751 139998927 -2272517 + (CA)n Simple_repeat Simple_repeat 1 177 0 338 247 0 6 chr9 139998962 139999136 -2272308 + (CA)n Simple_repeat Simple_repeat 1 173 0 194 275 0 110 chr9 140004137 140004228 -2267216 - L2 LINE L2 -23 3290 3210 245 301 108 30 chr9 140005099 140005264 -2266180 - MIR3 SINE MIR -53 155 4 287 213 139 19 chr9 140005278 140005386 -2266058 - L2 LINE L2 -2 3270 3150 366 312 0 0 chr9 140006738 140006831 -2264613 + C-rich Low_complexity Low_complexity 1 93 0 223 296 0 0 chr9 140006938 140006992 -2264452 + C-rich Low_complexity Low_complexity 3 56 0 360 307 0 0 chr9 140007013 140007278 -2264166 + C-rich Low_complexity Low_complexity 1 265 0 379 347 86 32 chr9 140007512 140007967 -2263477 + L1 LINE L1 4537 5028 -1118 591 188 120 8 chr9 140008176 140008293 -2263151 + AluJo SINE Alu 1 130 -172 921 191 0 54 chr9 140008350 140008554 -2262890 + AluJo SINE Alu 120 312 0 1551 182 40 14 chr9 140009398 140009750 -2261694 - MLT1B LTR MaLR 0 390 30 21 36 0 0 chr9 140010036 140010064 -2261380 + AT_rich Low_complexity Low_complexity 1 28 0 2235 90 0 17 chr9 140010072 140010372 -2261072 - AluSq SINE Alu -18 295 1 2229 92 0 46 chr9 140011630 140011957 -2259487 - AluSx SINE Alu 0 312 1 434 333 93 15 chr9 140013184 140013423 -2258021 - MIR SINE MIR 0 262 8 1575 244 75 18 chr9 140013763 140014325 -2257119 + L1ME LINE L1 3829 4422 -1724 3699 194 49 57 chr9 140014329 140016061 -2255383 - L1MB7 LINE L1 -159 6025 4282 365 127 0 16 chr9 140016061 140016124 -2255320 + AluJo SINE Alu 76 137 -165 3699 194 49 57 chr9 140016124 140016997 -2254447 - L1MB7 LINE L1 -1902 4282 2140 2435 80 3 3 chr9 140017036 140017337 -2254107 + AluY SINE Alu 1 301 -10 426 327 134 59 chr9 140017338 140017390 -2254054 + L1ME LINE L1 5345 5392 -770 2033 97 4 0 chr9 140017390 140017649 -2253795 + AluSq SINE Alu 41 300 -13 426 327 134 59 chr9 140017649 140017969 -2253475 + L1ME LINE L1 5392 5745 -417 24 0 0 0 chr9 140018803 140018827 -2252617 + AT_rich Low_complexity Low_complexity 1 24 0 548 167 0 0 chr9 140018844 140018940 -2252504 - FRAM SINE Alu -71 105 10 1402 163 23 0 chr9 140019050 140019271 -2252173 - AluJo SINE Alu -17 295 70 2256 120 0 0 chr9 140019579 140019880 -2251564 - AluSx SINE Alu -11 301 1 243 299 0 13 chr9 140019924 140020001 -2251443 + (CA)n Simple_repeat Simple_repeat 1 76 0 1835 127 48 64 chr9 140020153 140020467 -2250977 - AluSx SINE Alu -3 309 1 562 222 114 0 chr9 140020492 140020659 -2250785 - MER53 DNA DNA -3 186 1 187 216 0 59 chr9 140020777 140020828 -2250616 - L2 LINE L2 0 3313 3266 2123 131 3 0 chr9 140021043 140021340 -2250104 - AluSx SINE Alu -14 298 1 222 118 0 0 chr9 140021343 140021377 -2250067 + (T)n Simple_repeat Simple_repeat 1 34 0 6211 221 37 136 chr9 140021417 140023067 -2248377 - L1MC3 LINE L1 -8 7777 5965 2048 125 4 0 chr9 140023067 140023372 -2248072 + AluSx SINE Alu 1 306 0 6211 221 37 136 chr9 140023372 140023840 -2247604 - L1MC3 LINE L1 -1820 5965 5992 2331 101 3 10 chr9 140023840 140024146 -2247298 - AluSp SINE Alu -9 304 1 6211 221 37 136 chr9 140024146 140024849 -2246595 - L1MC3 LINE L1 -1792 5993 5222 2736 57 6 0 chr9 140024994 140025347 -2246097 - THE1A LTR MaLR 0 355 1 522 209 78 58 chr9 140025518 140025709 -2245735 + L2 LINE L2 3112 3306 -7 1264 138 46 10 chr9 140025835 140026031 -2245413 + AluJb SINE Alu 85 287 -25 29 0 0 0 chr9 140026031 140026060 -2245384 + AT_rich Low_complexity Low_complexity 1 29 0 1666 105 130 0 chr9 140026830 140027068 -2244376 - AluSx SINE Alu -4 308 40 888 198 17 114 chr9 140027116 140027433 -2244011 + MER33 DNA MER1_type 1 281 -2304 2355 103 0 3 chr9 140027433 140027744 -2243700 + AluSg SINE Alu 1 310 0 888 198 17 114 chr9 140027744 140027784 -2243660 + MER33 DNA MER1_type 281 323 -1 2339 102 3 7 chr9 140028352 140028657 -2242787 + AluSx SINE Alu 1 304 -8 2359 99 0 3 chr9 140029085 140029387 -2242057 + AluSc SINE Alu 1 301 -8 1140 207 40 82 chr9 140029401 140029593 -2241851 - MLT1B LTR MaLR -2 388 220 315 0 0 0 chr9 140029593 140029628 -2241816 + (TC)n Simple_repeat Simple_repeat 2 36 0 1140 207 40 82 chr9 140029628 140029840 -2241604 - MLT1B LTR MaLR -170 220 1 207 0 0 0 chr9 140029846 140029869 -2241575 + (A)n Simple_repeat Simple_repeat 1 23 0 1697 186 21 0 chr9 140029885 140030175 -2241269 + AluJb SINE Alu 2 297 -15 805 314 66 28 chr9 140030337 140030634 -2240810 - L1MC4a LINE L1 -1875 5933 5612 5349 77 16 4 chr9 140030634 140031391 -2240053 - MER4E LTR ERV1 0 766 1 805 314 66 28 chr9 140031391 140031530 -2239914 - L1MC4a LINE L1 -2196 5612 5480 804 136 99 0 chr9 140031561 140031723 -2239721 + LTR10B LTR ERV1 1 178 -369 316 331 58 22 chr9 140031825 140031964 -2239480 + L1M4c LINE L1 2332 2475 -3909 295 226 39 20 chr9 140032049 140032151 -2239293 - L1MC4a LINE L1 -1676 4470 4367 2686 108 54 11 chr9 140032161 140032607 -2238837 + MER4C LTR ERV1 1 465 0 257 137 98 20 chr9 140032611 140032662 -2238782 + MER4C-int LTR ERV1 3 57 -6541 853 99 0 0 chr9 140032678 140032789 -2238655 - AluSg/x SINE Alu -13 299 189 4508 123 24 23 chr9 140032797 140033548 -2237896 + MER4E LTR ERV1 22 773 -6 1290 151 214 27 chr9 140033554 140033941 -2237503 + MER4C-int LTR ERV1 53 563 -6035 1408 152 29 108 chr9 140034095 140034410 -2237034 + LTR10B LTR ERV1 258 547 0 374 210 6 44 chr9 140034416 140034566 -2236878 + MER4C-int LTR ERV1 622 831 -5767 1271 228 40 95 chr9 140034595 140034708 -2236736 + MER4C-int LTR ERV1 1839 1957 -5222 2285 211 22 64 chr9 140034708 140035347 -2236097 - LTR9 LTR ERV1 0 612 1 1271 228 40 95 chr9 140035347 140035678 -2235766 + MER4C-int LTR ERV1 1957 3096 -4083 418 161 0 0 chr9 140035662 140035724 -2235720 + PABL_A-int LTR ERV1 2661 2722 -3224 * 440 230 163 7 chr9 140035774 140035909 -2235535 + MER34C LTR ERV1 162 317 -268 2225 163 54 48 chr9 140035909 140036500 -2234944 + PABL_A-int LTR ERV1 1197 3024 -3524 540 226 58 51 chr9 140036501 140036638 -2234806 + PABL_A-int LTR ERV1 1029 1166 -5592 564 209 17 0 chr9 140036663 140036835 -2234609 + (TG)n Simple_repeat Simple_repeat 2 176 0 316 191 21 0 chr9 140036846 140036940 -2234504 + (TG)n Simple_repeat Simple_repeat 1 96 0 1142 180 11 37 chr9 140036940 140037212 -2234232 + PABL_A-int LTR ERV1 846 1110 -7010 888 101 7 7 chr9 140037209 140037358 -2234086 + PABL_A-int LTR ERV1 1606 1754 -5004 * 529 82 0 0 chr9 140037358 140037431 -2234013 - MER4C LTR ERV1 0 465 393 1822 149 6 24 chr9 140037432 140037788 -2233656 - MER4A LTR ERV1 0 664 257 594 115 21 10 chr9 140037785 140037881 -2233563 - MER4A LTR ERV1 -567 97 1 * 2840 153 46 13 chr9 140037881 140038401 -2233043 - MER4B LTR ERV1 -72 538 2 3925 146 73 42 chr9 140038402 140038681 -2232763 + PABL_A-int LTR ERV1 2750 3019 -3579 3003 88 26 31 chr9 140038681 140038943 -2232501 - MLT2A2 LTR ERVL 0 453 192 2503 70 0 3 chr9 140038943 140039244 -2232200 - AluY SINE Alu -11 300 1 3003 88 26 31 chr9 140039244 140039436 -2232008 - MLT2A2 LTR ERVL -261 192 1 3925 146 73 42 chr9 140039436 140040023 -2231421 + PABL_A-int LTR ERV1 3019 3654 -2944 1977 147 10 7 chr9 140040023 140040323 -2231121 + AluSx SINE Alu 1 301 -11 3925 146 73 42 chr9 140040323 140040454 -2230990 + PABL_A-int LTR ERV1 3654 3779 -2819 1672 152 147 14 chr9 140040450 140040818 -2230626 + PABL_A-int LTR ERV1 3942 4358 -2240 * 299 143 351 13 chr9 140040806 140040883 -2230561 + PABL_A-int LTR ERV1 5627 5729 -869 * 546 128 0 12 chr9 140040883 140040969 -2230475 - MER4C LTR ERV1 -89 376 292 3900 93 99 11 chr9 140042606 140042699 -2228745 + PABL_B LTR ERV1 1 84 -583 2429 70 0 38 chr9 140042699 140043014 -2228430 + AluSx SINE Alu 1 303 -9 3900 93 99 11 chr9 140043014 140043533 -2227911 + PABL_B LTR ERV1 84 667 0 16780 180 22 9 chr9 140043542 140044534 -2226910 + PABL_A-int LTR ERV1 3205 4183 -2939 2326 95 0 13 chr9 140044534 140044838 -2226606 + AluSx SINE Alu 1 300 -12 16780 180 22 9 chr9 140044838 140046756 -2224688 + PABL_A-int LTR ERV1 4183 6152 -970 272 146 42 0 chr9 140046762 140046810 -2224634 + PABL_A-int LTR ERV1 6105 6154 -968 323 160 0 0 chr9 140046811 140046861 -2224583 + PABL_A-int LTR ERV1 6105 6154 -968 5320 191 20 36 chr9 140046862 140046943 -2224501 + PABL_A-int LTR ERV1 6105 6186 -936 2241 91 13 7 chr9 140046943 140047241 -2224203 - AluSx SINE Alu -12 300 1 5320 191 20 36 chr9 140047241 140047772 -2223672 + PABL_A-int LTR ERV1 6186 6697 -425 2413 59 14 0 chr9 140047772 140048061 -2223383 + AluY SINE Alu 3 295 -16 5320 191 20 36 chr9 140048061 140048481 -2222963 + PABL_A-int LTR ERV1 6697 7122 0 3714 103 80 32 chr9 140048481 140049110 -2222334 + PABL_A LTR ERV1 1 659 -1 489 261 173 23 chr9 140052325 140052732 -2218712 - MLT1D LTR MaLR 0 467 1 348 181 0 0 chr9 140052962 140053045 -2218399 + C-rich Low_complexity Low_complexity 2 84 0 288 333 24 15 chr9 140053216 140053410 -2218034 + L1MD2 LINE L1 5908 6124 -67 2227 109 0 0 chr9 140054284 140054568 -2216876 + AluSq SINE Alu 1 284 -29 230 0 0 32 chr9 140054568 140054599 -2216845 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 327 234 102 12 chr9 140054599 140054766 -2216678 + L2 LINE L2 2533 2714 -600 285 180 0 0 chr9 140054902 140054952 -2216492 - MLT1C LTR MaLR -361 106 57 2223 100 47 33 chr9 140055200 140055559 -2215885 + THE1B LTR MaLR 1 364 0 1175 247 108 10 chr9 140058116 140058525 -2212919 - MLT1D LTR MaLR -56 449 1 311 250 81 89 chr9 140058525 140058626 -2212818 + L1MB3 LINE L1 2291 2391 -3755 1894 129 11 14 chr9 140058626 140058732 -2212712 + AluJo SINE Alu 28 133 -179 2135 115 0 7 chr9 140058732 140059060 -2212384 + AluSx SINE Alu 6 331 0 1894 129 11 14 chr9 140059060 140059238 -2212206 + AluJo SINE Alu 133 312 0 311 250 81 89 chr9 140059238 140059372 -2212072 + L1MB3 LINE L1 2391 2524 -3622 753 271 42 11 chr9 140059411 140059695 -2211749 - MLT1D LTR MaLR -2 503 211 279 205 13 13 chr9 140059730 140059808 -2211636 + L1MC1 LINE L1 5946 6023 -310 921 129 0 0 chr9 140059808 140059940 -2211504 + AluJb SINE Alu 171 302 -10 945 240 217 16 chr9 140060070 140060577 -2210867 + L1ME2 LINE L1 5218 5827 -337 493 189 54 81 chr9 140060557 140060689 -2210755 + L1MB3 LINE L1 4119 4244 -1902 * 1817 134 6 48 chr9 140060689 140061003 -2210441 + AluJb SINE Alu 1 301 -11 493 189 54 81 chr9 140061003 140061092 -2210352 + L1MB3 LINE L1 4244 4334 -1812 1102 228 118 35 chr9 140061407 140061727 -2209717 + L1MB3 LINE L1 5540 5832 -342 2273 86 10 10 chr9 140061727 140062030 -2209414 + AluSq SINE Alu 1 303 -10 2295 111 0 16 chr9 140062032 140062347 -2209097 + AluSx SINE Alu 1 310 -2 1102 228 118 35 chr9 140062347 140062448 -2208996 + L1MB3 LINE L1 5832 5999 -175 1344 183 81 18 chr9 140062470 140062755 -2208689 - AluJo SINE Alu -9 303 1 706 150 18 0 chr9 140062758 140062871 -2208573 - AluJo/FLAM SINE Alu -185 127 13 591 238 14 0 chr9 140062890 140063037 -2208407 + L1MB3 LINE L1 6027 6175 -8 396 135 0 0 chr9 140064431 140064505 -2206939 + (CTGGGG)n Simple_repeat Simple_repeat 6 79 0 339 266 7 22 chr9 140064566 140064705 -2206739 + (CTGGGG)n Simple_repeat Simple_repeat 4 140 0 1665 217 31 64 chr9 140066279 140066731 -2204713 - LTR2 LTR ERV1 0 449 13 1085 128 17 17 chr9 140066877 140067056 -2204388 - MER72 LTR ERV1 0 722 544 2148 89 7 20 chr9 140068464 140068767 -2202677 - AluSq SINE Alu -14 299 1 182 91 30 0 chr9 140068945 140068978 -2202466 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 190 198 167 42 chr9 140069310 140069406 -2202038 + MIR3 SINE MIR 81 188 -20 228 290 0 54 chr9 140071464 140071650 -2199794 + (AGGTG)n Simple_repeat Simple_repeat 4 179 0 * 443 240 0 45 chr9 140071557 140071736 -2199708 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 2411 109 35 16 chr9 140075876 140076244 -2195200 + THE1C LTR MaLR 1 375 0 188 240 0 33 chr9 140077152 140077273 -2194171 + (CA)n Simple_repeat Simple_repeat 1 117 0 403 254 17 44 chr9 140077335 140077516 -2193928 + (CA)n Simple_repeat Simple_repeat 1 176 0 330 287 5 53 chr9 140077572 140077760 -2193684 + (CA)n Simple_repeat Simple_repeat 1 179 0 2058 165 58 0 chr9 140077765 140078158 -2193286 + MSTB LTR MaLR 4 419 -7 186 133 0 0 chr9 140080672 140080702 -2190742 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 28 48 0 0 chr9 140088088 140088130 -2183314 + GC_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr9 140088292 140088341 -2183103 + GC_rich Low_complexity Low_complexity 1 49 0 278 200 17 0 chr9 140089372 140089432 -2182012 + MIR3 SINE MIR 111 171 -37 528 240 25 0 chr9 140092092 140092213 -2179231 + MIR SINE MIR 58 181 -81 231 301 14 0 chr9 140092339 140092412 -2179032 - L1ME LINE L1 -454 5667 5594 823 170 0 7 chr9 140093023 140093164 -2178280 + FLAM_C SINE Alu 1 140 -3 380 350 0 17 chr9 140094226 140094403 -2177041 + (CATATA)n Simple_repeat Simple_repeat 4 177 0 1745 164 24 3 chr9 140094567 140094859 -2176585 - AluJb SINE Alu -8 304 7 2294 92 0 0 chr9 140095708 140096001 -2175443 - AluSx SINE Alu -19 293 1 469 359 22 16 chr9 140096073 140096313 -2175131 - L1ME LINE L1 -913 5233 4992 389 376 54 0 chr9 140096616 140096837 -2174607 - L1ME LINE L1 -1320 4826 4594 261 267 78 11 chr9 140097980 140098070 -2173374 - MIR SINE MIR -63 145 50 224 152 22 0 chr9 140100464 140100539 -2170905 + (CCCCAG)n Simple_repeat Simple_repeat 1 76 0 191 32 65 0 chr9 140100553 140100584 -2170860 + (CCCG)n Simple_repeat Simple_repeat 1 33 0 28 91 0 0 chr9 140100596 140100673 -2170771 + GC_rich Low_complexity Low_complexity 1 77 0 23 54 0 0 chr9 140100921 140100958 -2170486 + GC_rich Low_complexity Low_complexity 1 37 0 508 199 53 13 chr9 140102614 140102765 -2168679 - L1MB5 LINE L1 -59 6115 5959 1369 244 62 6 chr9 140108682 140109035 -2162409 - MLT1A2 LTR MaLR -1 373 1 580 249 28 28 chr9 140110694 140110871 -2160573 + MER53 DNA DNA 7 183 -6 184 307 40 13 chr9 140111231 140111306 -2160138 - MIR3 SINE MIR -51 157 81 405 256 116 26 chr9 140111374 140111606 -2159838 + MLT1C LTR MaLR 19 270 -197 304 245 113 0 chr9 140111654 140111760 -2159684 + MLT1C LTR MaLR 350 467 0 684 164 0 0 chr9 140112770 140112904 -2158540 + CT-rich Low_complexity Low_complexity 1 134 0 900 169 0 0 chr9 140112916 140113094 -2158350 + CT-rich Low_complexity Low_complexity 1 178 0 795 192 0 0 chr9 140113110 140113287 -2158157 + CT-rich Low_complexity Low_complexity 2 178 0 239 215 15 0 chr9 140113304 140113369 -2158075 + CT-rich Low_complexity Low_complexity 2 67 0 287 236 0 47 chr9 140113406 140113533 -2157911 + G-rich Low_complexity Low_complexity 1 121 0 896 183 6 0 chr9 140113633 140113994 -2157450 + CT-rich Low_complexity Low_complexity 1 363 0 471 265 135 8 chr9 140114572 140114832 -2156612 + MLT1D LTR MaLR 206 498 -7 804 228 15 20 chr9 140115437 140115634 -2155810 + MLT1B LTR MaLR 1 196 -194 1067 293 74 7 chr9 140115684 140116128 -2155316 + MLT1E2 LTR MaLR 137 610 -16 303 316 8 0 chr9 140116152 140116269 -2155175 - L1MC5 LINE L1 -519 7442 7325 1479 219 110 60 chr9 140116800 140117220 -2154224 + MLT1D LTR MaLR 1 449 -56 2179 129 0 0 chr9 140117220 140117530 -2153914 + AluJb SINE Alu 1 310 -2 1479 219 110 60 chr9 140117530 140117589 -2153855 + MLT1D LTR MaLR 449 504 -1 431 236 97 0 chr9 140117634 140117778 -2153666 - L1MC4 LINE L1 -1064 6978 6821 731 311 36 57 chr9 140117873 140118433 -2153011 - HAL1b LINE L1 -542 806 259 288 0 0 0 chr9 140118477 140118509 -2152935 + (TA)n Simple_repeat Simple_repeat 1 32 0 259 65 43 0 chr9 140118509 140118555 -2152889 + GA-rich Low_complexity Low_complexity 1 48 0 2051 99 7 7 chr9 140118555 140118837 -2152607 - AluSx SINE Alu -30 282 1 302 45 23 0 chr9 140119269 140119313 -2152131 + (TC)n Simple_repeat Simple_repeat 2 46 0 243 146 0 0 chr9 140119315 140119356 -2152088 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 542 292 6 11 chr9 140119698 140119876 -2151568 + C-rich Low_complexity Low_complexity 2 178 0 594 253 0 3 chr9 140119949 140120248 -2151196 + C-rich Low_complexity Low_complexity 1 297 0 41 21 0 0 chr9 140123197 140123245 -2148199 + GC_rich Low_complexity Low_complexity 1 48 0 27 49 0 0 chr9 140123300 140123341 -2148103 + GC_rich Low_complexity Low_complexity 1 41 0 190 359 0 39 chr9 140124047 140124125 -2147319 - L2 LINE L2 -11 3261 3187 207 378 45 9 chr9 140124434 140124545 -2146899 - MIR SINE MIR -79 183 69 206 351 26 18 chr9 140124832 140124946 -2146498 - MIR SINE MIR -29 233 119 1671 171 16 0 chr9 140126562 140126878 -2144566 - MLT1B LTR MaLR -63 327 7 180 0 0 0 chr9 140127522 140127542 -2143902 + (TCCCC)n Simple_repeat Simple_repeat 2 21 0 221 350 169 6 chr9 140128349 140128526 -2142918 + MIR SINE MIR 45 250 -12 257 218 26 26 chr9 140129285 140129363 -2142081 + (TCTG)n Simple_repeat Simple_repeat 2 79 0 1697 168 30 3 chr9 140134557 140134860 -2136584 - AluJo SINE Alu -1 311 1 185 32 0 65 chr9 140135927 140135958 -2135486 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 327 300 259 40 chr9 140138570 140138867 -2132577 - HAL1 LINE L1 -1540 967 606 363 223 131 0 chr9 140138890 140139020 -2132424 - HAL1 LINE L1 -1946 561 415 191 259 121 0 chr9 140139140 140139198 -2132246 + L2 LINE L2 3214 3278 -35 940 151 15 5 chr9 140139211 140139817 -2131627 + (TGGA)n Simple_repeat Simple_repeat 1 612 0 759 91 0 74 chr9 140147730 140147851 -2123593 - FLAM_A SINE Alu -12 130 19 281 175 10 82 chr9 140148191 140148288 -2123156 - MLT1C LTR MaLR -327 140 51 1869 149 7 13 chr9 140148865 140149167 -2122277 + AluJo SINE Alu 1 300 -12 1745 168 0 7 chr9 140149168 140149454 -2121990 + AluSx SINE Alu 1 284 -28 477 243 51 25 chr9 140150154 140150494 -2120950 - MLT1C LTR MaLR -36 431 42 249 249 31 23 chr9 140150519 140150615 -2120829 - MIR SINE MIR -65 143 101 1877 141 3 13 chr9 140150877 140151175 -2120269 + AluJb SINE Alu 1 295 -17 188 256 0 0 chr9 140159322 140159361 -2112083 - MIR SINE MIR -112 150 112 217 108 62 15 chr9 140160820 140160885 -2110559 + (TG)n Simple_repeat Simple_repeat 2 69 0 607 79 70 16 chr9 140160902 140161225 -2110219 + (TG)n Simple_repeat Simple_repeat 1 340 0 214 114 71 0 chr9 140161377 140161447 -2109997 + (TG)n Simple_repeat Simple_repeat 2 76 0 205 344 11 0 chr9 140161458 140161548 -2109896 + (TG)n Simple_repeat Simple_repeat 1 91 0 1262 300 139 46 chr9 140162276 140163021 -2108423 - L1MC4 LINE L1 0 8042 7145 2022 135 0 28 chr9 140163021 140163339 -2108105 - AluJb SINE Alu 0 312 4 1262 300 139 46 chr9 140163339 140163779 -2107665 - L1MC4 LINE L1 -897 7145 6747 211 270 32 0 chr9 140164461 140164524 -2106920 + C-rich Low_complexity Low_complexity 2 66 0 221 277 25 61 chr9 140164555 140164829 -2106615 + C-rich Low_complexity Low_complexity 1 263 0 279 336 71 0 chr9 140164975 140165088 -2106356 + MIR3 SINE MIR 81 201 -7 297 308 17 33 chr9 140166693 140166813 -2104631 - MIR3 SINE MIR -35 173 56 340 255 10 59 chr9 140168361 140168463 -2102981 - L1ME4a LINE L1 -11 6110 6014 832 152 0 0 chr9 140168577 140168702 -2102742 + FLAM_C SINE Alu 2 126 -17 2115 97 34 0 chr9 140168707 140169005 -2102439 + AluSx SINE Alu 1 308 -4 548 252 145 13 chr9 140169378 140169740 -2101704 - MER45B DNA AcHobo -51 989 556 965 266 126 0 chr9 140169881 140170317 -2101127 + MLT1D LTR MaLR 9 499 -6 203 309 11 32 chr9 140170627 140170721 -2100723 + (CA)n Simple_repeat Simple_repeat 1 92 0 414 0 0 0 chr9 140171258 140171304 -2100140 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 189 0 0 0 chr9 140172185 140172206 -2099238 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 231 36 0 0 chr9 140172942 140172970 -2098474 + (CCCTG)n Simple_repeat Simple_repeat 3 30 0 209 261 0 87 chr9 140173571 140173663 -2097781 + MIR3 SINE MIR 84 167 -41 290 221 44 0 chr9 140176292 140176360 -2095084 - MIR SINE MIR -79 183 113 1108 187 131 89 chr9 140181887 140181927 -2089517 + L1MCa LINE L1 1930 1967 -4459 1674 162 3 34 chr9 140181927 140182248 -2089196 + AluJb SINE Alu 1 311 -1 1108 187 131 89 chr9 140182248 140182725 -2088719 + L1MCa LINE L1 1967 2469 -3957 2183 96 3 19 chr9 140182725 140183038 -2088406 + AluSx SINE Alu 1 308 -4 220 212 62 62 chr9 140184467 140184580 -2086864 + L2 LINE L2 2293 2405 -909 219 186 0 0 chr9 140185548 140185591 -2085853 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 1773 160 0 4 chr9 140186528 140186809 -2084635 - AluJb SINE Alu -11 301 22 21 0 0 0 chr9 140186812 140186833 -2084611 + AT_rich Low_complexity Low_complexity 1 21 0 973 159 11 0 chr9 140187080 140187256 -2084188 + MLT1B LTR MaLR 1 178 -212 2321 68 0 3 chr9 140187256 140187552 -2083892 + AluY SINE Alu 1 295 -16 384 276 238 5 chr9 140187560 140187709 -2083735 + L1ME LINE L1 4443 4556 -1590 378 0 0 0 chr9 140187709 140187751 -2083693 + (GGGGA)n Simple_repeat Simple_repeat 1 42 0 384 276 238 5 chr9 140187751 140187811 -2083633 + L1ME LINE L1 4556 4701 -1445 1050 232 98 39 chr9 140187894 140188351 -2083093 - MLT1D LTR MaLR 0 505 22 360 383 6 23 chr9 140188417 140188592 -2082852 + L1ME LINE L1 4863 5034 -1112 2286 91 0 19 chr9 140188617 140188935 -2082509 - AluSx SINE Alu 0 312 1 256 267 38 0 chr9 140189108 140189213 -2082231 + L1M LINE L1 5318 5426 -736 2277 76 7 0 chr9 140189214 140189503 -2081941 + AluSg SINE Alu 1 291 -19 362 327 20 60 chr9 140189625 140189824 -2081620 + L1ME LINE L1 5272 5462 -700 509 220 83 0 chr9 140190186 140190318 -2081126 + MER104 DNA Tc2 35 177 -3 2259 97 0 3 chr9 140190977 140191277 -2080167 + AluSx SINE Alu 1 299 -13 2238 91 7 7 chr9 140193391 140193689 -2077755 - AluSx SINE Alu -14 298 1 269 267 147 0 chr9 140194213 140194329 -2077115 - MIR3 SINE MIR -9 199 67 2236 227 51 79 chr9 140198605 140199460 -2071984 + L1MB7 LINE L1 5352 6174 -10 2038 114 48 3 chr9 140199462 140199751 -2071693 + AluSx SINE Alu 1 302 -10 230 165 193 0 chr9 140200085 140200194 -2071250 + Charlie1 DNA MER1_type 2501 2630 -131 522 274 147 38 chr9 140200376 140200872 -2070572 + MER68 LTR ERV1 13 562 0 273 253 30 30 chr9 140201656 140201755 -2069689 + L2 LINE L2 2887 2985 -328 237 245 158 22 chr9 140202894 140203033 -2068411 + L1ME LINE L1 10 167 -5903 397 327 36 91 chr9 140203100 140203409 -2068035 + L1ME LINE L1 265 556 -5514 908 309 81 45 chr9 140203727 140204151 -2067293 + L1MC4 LINE L1 7414 7868 -174 1800 156 0 37 chr9 140204151 140204472 -2066972 - AluJb SINE Alu -1 311 3 908 309 81 45 chr9 140204472 140204653 -2066791 + L1MC4 LINE L1 7868 8041 -1 986 126 0 0 chr9 140206192 140206327 -2065117 + AluSq/x SINE Alu 1 135 -178 2013 118 3 41 chr9 140206327 140206641 -2064803 + AluSx SINE Alu 1 302 -10 884 256 131 0 chr9 140206779 140207053 -2064391 - MER7A DNA MER2_type 0 346 39 491 295 88 64 chr9 140207198 140207527 -2063917 + MER58B DNA MER1_type 1 337 -4 730 264 94 18 chr9 140210207 140210674 -2060770 - Charlie1b DNA MER1_type -2 521 1 2149 128 0 0 chr9 140211160 140211465 -2059979 + AluSc SINE Alu 1 305 -4 344 270 112 13 chr9 140212137 140212289 -2059155 + L1ME LINE L1 5515 5681 -440 189 0 0 0 chr9 140212970 140212991 -2058453 + (CA)n Simple_repeat Simple_repeat 1 21 0 481 335 70 0 chr9 140215222 140215452 -2055992 + HERV16 LTR ERVL 480 725 -4271 7813 213 65 43 chr9 140215455 140215930 -2055514 + L1M2 LINE L1 2674 3137 -4428 1842 142 0 60 chr9 140215930 140216261 -2055183 + AluJo SINE Alu 1 311 -1 7813 213 65 43 chr9 140216261 140216282 -2055162 + L1M2 LINE L1 3137 3156 -4409 1975 126 3 0 chr9 140216282 140216607 -2054837 + AluSx SINE Alu 1 312 0 7813 213 65 43 chr9 140216607 140217599 -2053845 + L1M2 LINE L1 3156 4125 -3440 2166 89 33 3 chr9 140217599 140217901 -2053543 + AluSx SINE Alu 1 311 -1 7813 213 65 43 chr9 140217901 140218062 -2053382 + L1M2 LINE L1 4125 4281 -3284 768 171 0 55 chr9 140218062 140218208 -2053236 + FLAM_C SINE Alu 1 138 -5 7813 213 65 43 chr9 140218208 140219787 -2051657 + L1M2 LINE L1 4281 6148 -1417 2716 13 0 0 chr9 140219787 140220091 -2051353 - AluYa5 SINE Alu -7 304 1 7813 213 65 43 chr9 140220091 140220753 -2050691 + L1M2 LINE L1 6148 6794 -771 16197 77 35 15 chr9 140220857 140223505 -2047939 + L1PA7 LINE L1 2955 5681 -473 2262 83 0 25 chr9 140223505 140223819 -2047625 + AluY SINE Alu 1 306 -5 16197 77 35 15 chr9 140223819 140224249 -2047195 + L1PA7 LINE L1 5681 6101 -53 342 138 0 0 chr9 140224884 140224942 -2046502 + (CA)n Simple_repeat Simple_repeat 2 59 0 481 301 61 55 chr9 140225013 140225427 -2046017 - L1ME3A LINE L1 -311 5859 5449 2034 169 31 3 chr9 140225427 140225783 -2045661 - MER47A DNA MER2_type 0 366 1 481 301 61 55 chr9 140225783 140226199 -2045245 - L1ME3A LINE L1 -721 5449 5024 254 289 63 63 chr9 140228589 140228921 -2042523 - L1M4 LINE L1 -818 5328 4997 634 129 9 5 chr9 140229220 140229349 -2042095 + L1MC4 LINE L1 6891 7088 -793 437 272 231 6 chr9 140229405 140229729 -2041715 + L1MC4 LINE L1 7227 7623 -419 425 227 42 25 chr9 140230774 140230893 -2040551 - L1M4 LINE L1 -2889 3257 3137 1638 165 50 0 chr9 140230906 140231185 -2040259 - AluJb SINE Alu -18 294 2 2502 78 3 40 chr9 140231196 140231431 -2040013 - L1PA14 LINE L1 -1 6160 5943 2150 106 0 0 chr9 140231431 140231724 -2039720 - AluSx SINE Alu -19 293 1 2502 78 3 40 chr9 140231724 140231859 -2039585 - L1PA14 LINE L1 -218 5943 5804 1908 120 0 27 chr9 140231902 140232203 -2039241 + AluSx SINE Alu 14 306 -6 2403 60 0 13 chr9 140232203 140232518 -2038926 + AluY SINE Alu 1 311 0 2044 143 36 33 chr9 140232565 140232928 -2038516 - THE1B LTR MaLR 0 364 1 342 308 49 7 chr9 140233099 140233242 -2038202 - HAL1 LINE L1 -338 2169 2021 448 294 70 9 chr9 140233391 140233848 -2037596 - HAL1 LINE L1 -943 1564 1052 380 198 55 0 chr9 140234035 140234126 -2037318 - HAL1 LINE L1 -1600 907 812 382 280 37 0 chr9 140234795 140234902 -2036542 - L2 LINE L2 -12 3301 3191 2036 198 92 31 chr9 140234996 140235516 -2035928 - MLT2B3 LTR ERVL 0 554 3 180 0 0 0 chr9 140235826 140235846 -2035598 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2185 73 0 0 chr9 140235850 140236124 -2035320 - AluY SINE Alu -37 274 1 1680 155 0 77 chr9 140236355 140236691 -2034753 + AluJb SINE Alu 1 310 -2 2309 98 0 0 chr9 140236748 140237054 -2034390 + AluSx SINE Alu 1 306 -6 1829 156 30 0 chr9 140237735 140238036 -2033408 - AluSx SINE Alu -2 310 1 520 163 0 0 chr9 140238609 140238689 -2032755 - FRAM/FAM SINE Alu -102 74 1 21 0 0 0 chr9 140238806 140238827 -2032617 + AT_rich Low_complexity Low_complexity 1 21 0 194 246 58 14 chr9 140239650 140239719 -2031725 - L3 LINE CR1 -1362 215 144 3173 166 99 6 chr9 140240846 140241483 -2029961 + L1MA9 LINE L1 5593 6288 -24 2094 125 0 3 chr9 140242289 140242600 -2028844 + AluSx SINE Alu 1 310 -2 385 368 40 7 chr9 140246167 140246471 -2024973 + MERVL LTR ERVL 4215 4528 -957 14364 130 21 118 chr9 140246740 140249220 -2022224 + L1P LINE L1 3 2722 -3424 2221 93 3 0 chr9 140249220 140249520 -2021924 + AluSp SINE Alu 1 301 -12 14364 130 21 118 chr9 140249520 140249764 -2021680 + L1P LINE L1 2722 2361 -3785 2066 74 3 11 chr9 140249764 140250047 -2021397 + AluY SINE Alu 1 281 -30 14364 130 21 118 chr9 140250047 140250587 -2020857 + L1P LINE L1 2360 2951 -3195 422 287 0 0 chr9 140253350 140253458 -2017986 + FLAM_C SINE Alu 4 111 -32 21 0 0 0 chr9 140253462 140253483 -2017961 + AT_rich Low_complexity Low_complexity 1 21 0 417 201 93 62 chr9 140253991 140254212 -2017232 + L1M2 LINE L1 1573 1932 -907 1582 232 92 43 chr9 140254214 140254594 -2016850 + Charlie1 DNA MER1_type 1611 2034 -727 2274 92 3 0 chr9 140254594 140254900 -2016544 - AluY SINE Alu -4 307 1 1582 232 92 43 chr9 140254900 140255127 -2016317 + Charlie1 DNA MER1_type 2034 2248 -513 292 164 137 0 chr9 140255132 140255205 -2016239 + L1MB7 LINE L1 5283 5365 -809 1979 139 0 0 chr9 140255205 140255506 -2015938 + AluSx SINE Alu 1 301 -11 3080 193 30 40 chr9 140255507 140256096 -2015348 + L1MB7 LINE L1 5480 6073 -111 2049 148 38 14 chr9 140256096 140256462 -2014982 + THE1C LTR MaLR 1 375 0 3080 193 30 40 chr9 140256462 140256496 -2014948 + L1MB7 LINE L1 6073 6106 -78 1612 180 0 10 chr9 140256496 140256802 -2014642 + AluSx SINE Alu 1 303 -9 3080 193 30 40 chr9 140256802 140256870 -2014574 + L1MB7 LINE L1 6106 6165 -19 1706 216 44 59 chr9 140256877 140257175 -2014269 + Charlie1 DNA MER1_type 2217 2518 -243 1671 175 7 3 chr9 140257175 140257461 -2013983 - AluJb SINE Alu -14 298 12 1706 216 44 59 chr9 140257461 140257632 -2013812 + Charlie1 DNA MER1_type 2518 2690 -71 735 183 0 0 chr9 140257632 140257763 -2013681 + FLAM_C SINE Alu 2 132 -1 1706 216 44 59 chr9 140257763 140257805 -2013639 + Charlie1 DNA MER1_type 2690 2723 -38 2083 93 10 3 chr9 140257805 140258096 -2013348 + AluSp SINE Alu 1 293 -20 1706 216 44 59 chr9 140258096 140258128 -2013316 + Charlie1 DNA MER1_type 2723 2754 -7 251 281 21 0 chr9 140258133 140258229 -2013215 + L1ME1 LINE L1 1761 1858 -4538 267 289 195 8 chr9 140258257 140258385 -2013059 + L1ME1 LINE L1 1918 2069 -4327 3883 252 107 18 chr9 140258421 140260204 -2011240 + L1ME1 LINE L1 2153 4056 -2159 1309 146 32 32 chr9 140260216 140260463 -2010981 + AluJo SINE Alu 42 288 -24 3698 232 82 49 chr9 140260496 140261197 -2010247 + L1ME1 LINE L1 4064 4741 -1494 2156 113 0 3 chr9 140261197 140261497 -2009947 - AluSq SINE Alu -14 299 1 3698 232 82 49 chr9 140261497 140261953 -2009491 + L1ME1 LINE L1 4741 5181 -1054 1976 105 21 3 chr9 140261953 140262239 -2009205 - AluSx SINE Alu -21 291 1 3698 232 82 49 chr9 140262239 140262714 -2008730 + L1ME1 LINE L1 5181 5639 -596 2061 133 0 0 chr9 140262714 140263015 -2008429 + AluSx SINE Alu 2 302 -10 3698 232 82 49 chr9 140263015 140263431 -2008013 + L1ME1 LINE L1 5639 6172 -63 204 40 0 0 chr9 140263483 140263508 -2007936 + (A)n Simple_repeat Simple_repeat 1 25 0 1550 178 16 32 chr9 140263510 140263819 -2007625 + AluJb SINE Alu 1 304 -8 326 279 132 10 chr9 140263845 140264042 -2007402 + HAL1 LINE L1 1364 1584 -923 324 220 33 66 chr9 140264900 140264991 -2006453 + HAL1 LINE L1 2002 2089 -418 283 289 142 5 chr9 140265918 140266108 -2005336 + L1ME4a LINE L1 5906 6121 0 1860 131 0 48 chr9 140267047 140267360 -2004084 + AluJb SINE Alu 1 298 -14 536 145 0 0 chr9 140269117 140269200 -2002244 + FRAM SINE Alu 72 154 -22 380 294 122 11 chr9 140269680 140269860 -2001584 - MIR SINE MIR -32 230 31 536 293 224 14 chr9 140270985 140271337 -2000107 + L2 LINE L2 1917 2342 -972 205 266 133 75 chr9 140272143 140272316 -1999128 - L2 LINE L2 -3 3310 3128 338 265 96 92 chr9 140275191 140275463 -1995981 + L1MCa LINE L1 829 1101 -5308 407 270 90 18 chr9 140276850 140277150 -1994294 + L1ME LINE L1 64 628 -5902 1229 257 115 39 chr9 140277326 140278235 -1993209 + L1ME LINE L1 775 1723 -4817 689 128 48 48 chr9 140278409 140278534 -1992910 + FLAM_C SINE Alu 2 126 -17 2282 94 7 0 chr9 140278557 140278865 -1992579 + AluSg SINE Alu 1 310 0 1619 217 0 3 chr9 140278894 140279207 -1992237 + AluJo SINE Alu 1 312 0 381 325 78 37 chr9 140279209 140279587 -1991857 + L1MCa LINE L1 1095 2367 -1307 248 271 53 33 chr9 140279600 140279751 -1991693 + L1M4 LINE L1 1526 1679 -4863 4360 222 110 32 chr9 140279817 140282738 -1988706 + L1ME2 LINE L1 4 3127 -3279 1444 207 80 3 chr9 140282758 140283058 -1988386 + MLT1A1 LTR MaLR 1 323 -42 325 183 0 0 chr9 140283064 140283124 -1988320 - MER44D DNA MER2_type 0 705 646 1694 174 7 3 chr9 140283173 140283461 -1987983 - AluJo SINE Alu -23 289 1 2188 176 47 12 chr9 140283461 140283887 -1987557 - MER44D DNA MER2_type -233 472 32 881 204 25 21 chr9 140283927 140284167 -1987277 + L1ME2 LINE L1 3149 3389 -3017 * 918 206 18 18 chr9 140284145 140284368 -1987076 + L1MD1 LINE L1 6259 6481 -21 820 167 23 0 chr9 140284370 140284502 -1986942 + AluJo SINE Alu 1 135 -177 1744 221 101 8 chr9 140284511 140285083 -1986361 + L1ME2 LINE L1 5523 6150 -274 472 308 118 0 chr9 140285091 140285286 -1986158 + L1ME2 LINE L1 6198 6415 -9 822 95 71 16 chr9 140285314 140285440 -1986004 + FLAM_C SINE Alu 1 133 0 1642 174 11 0 chr9 140286045 140286326 -1985118 - AluJo SINE Alu -24 288 5 2322 77 0 7 chr9 140286419 140286718 -1984726 + AluY SINE Alu 1 297 -14 2075 113 7 0 chr9 140286935 140287227 -1984217 - AluSx SINE Alu -18 294 1 1574 137 13 57 chr9 140287508 140287807 -1983637 + AluJb SINE Alu 16 301 -11 215 205 333 0 chr9 140288158 140288236 -1983208 - L2 LINE L2 -7 3306 3203 180 284 63 32 chr9 140288975 140289070 -1982374 + MIR3 SINE MIR 84 181 -27 1401 141 6 114 chr9 140290265 140290606 -1980838 + AluYa8 SINE Alu 7 310 0 462 179 0 0 chr9 140290607 140290691 -1980753 + FLAM_A SINE Alu 35 118 -24 279 288 27 14 chr9 140290693 140290766 -1980678 - AluJ/FLAM SINE Alu -227 75 2 2113 95 7 0 chr9 140290860 140291154 -1980290 + AluSg SINE Alu 1 296 -14 226 152 0 61 chr9 140293105 140293171 -1978273 + C-rich Low_complexity Low_complexity 4 65 0 27 49 0 0 chr9 140293374 140293415 -1978029 + GC_rich Low_complexity Low_complexity 1 41 0 206 218 0 18 chr9 140293462 140293517 -1977927 + (CCG)n Simple_repeat Simple_repeat 3 56 0 186 143 0 0 chr9 140294030 140294065 -1977379 + (CGG)n Simple_repeat Simple_repeat 3 37 0 253 215 31 0 chr9 140294114 140294182 -1977262 + C-rich Low_complexity Low_complexity 1 70 0 356 189 15 98 chr9 140295095 140295227 -1976217 - L1 LINE L1 -2598 3548 3428 533 323 86 9 chr9 140295256 140295661 -1975783 - L2 LINE L2 -252 3061 2629 1274 216 11 85 chr9 140295716 140296068 -1975376 - L1M4 LINE L1 -1826 4320 3995 685 124 0 0 chr9 140296069 140296166 -1975278 + AluS SINE Alu 2 98 -215 237 182 0 0 chr9 140296269 140296313 -1975131 + Alu SINE Alu 129 172 -131 2053 122 3 0 chr9 140296374 140296669 -1974775 - AluSx SINE Alu -16 296 1 1138 218 162 39 chr9 140296669 140297049 -1974395 - L1M4 LINE L1 -2156 3990 3522 661 231 0 8 chr9 140297049 140297183 -1974261 - FLAM_A SINE Alu 0 133 1 1138 218 162 39 chr9 140297183 140297344 -1974100 - L1M4 LINE L1 -2624 3522 3382 235 303 0 0 chr9 140297349 140297415 -1974029 - L2 LINE L2 -864 2450 2385 363 336 84 14 chr9 140297494 140297708 -1973736 - L2 LINE L2 -961 2353 2125 2079 98 56 27 chr9 140297817 140298155 -1973289 - THE1B LTR MaLR 0 364 17 1638 105 9 0 chr9 140298878 140299106 -1972338 + AluSg/x SINE Alu 78 307 -3 1736 183 0 7 chr9 140299114 140299420 -1972024 + AluJb SINE Alu 1 304 -8 2456 62 3 0 chr9 140299460 140299767 -1971677 - AluY SINE Alu -3 308 1 375 130 0 0 chr9 140300136 140300190 -1971254 + MLT1D LTR MaLR 26 79 -426 1073 186 93 96 chr9 140300190 140300508 -1970936 - MLT1A1 LTR MaLR 0 365 47 2225 143 86 36 chr9 140300508 140300774 -1970670 - MER65A LTR ERV1 -1 444 148 2139 130 0 0 chr9 140300774 140301074 -1970370 + AluSx SINE Alu 1 300 -12 2225 143 86 36 chr9 140301074 140301228 -1970216 - MER65A LTR ERV1 -297 148 3 1073 186 93 96 chr9 140301228 140301275 -1970169 - MLT1A1 LTR MaLR -318 47 1 * 2076 179 44 16 chr9 140301275 140301694 -1969750 + MLT1D LTR MaLR 75 505 0 1151 265 40 12 chr9 140302055 140302383 -1969061 + Charlie4a DNA MER1_type 48 384 -124 6799 191 81 45 chr9 140302419 140302988 -1968456 + L1MB3 LINE L1 3508 4055 -2128 2034 125 3 0 chr9 140302988 140303284 -1968160 + AluSp SINE Alu 1 297 -16 6799 191 81 45 chr9 140303284 140304159 -1967285 + L1MB3 LINE L1 4055 4897 -1286 374 180 0 0 chr9 140304159 140304220 -1967224 + AluJo SINE Alu 2 62 -240 2055 101 7 14 chr9 140304230 140304517 -1966927 + AluSc SINE Alu 1 285 -24 1485 153 12 8 chr9 140304519 140304767 -1966677 + AluJo SINE Alu 55 303 -9 6799 191 81 45 chr9 140304767 140304908 -1966536 + L1MB3 LINE L1 4905 5039 -1144 2001 136 7 3 chr9 140304908 140305218 -1966226 + AluJb SINE Alu 1 311 -1 6799 191 81 45 chr9 140305218 140305983 -1965461 + L1MB3 LINE L1 5039 6032 -151 246 233 116 35 chr9 140306396 140306482 -1964962 + FRAM/FAM SINE Alu 3 79 -87 1201 145 36 0 chr9 140306722 140306915 -1964529 + AluJo SINE Alu 9 208 -104 311 167 0 0 chr9 140307747 140307801 -1963643 - MER106B DNA MER1_type -917 142 89 29 21 0 21 chr9 140309017 140309042 -1962402 + AT_rich Low_complexity Low_complexity 1 26 -20 818 104 26 0 chr9 140309042 140309157 -1962287 - FLAM_C SINE Alu -15 118 1 29 21 0 21 chr9 140309157 140309178 -1962266 + AT_rich Low_complexity Low_complexity 26 46 0 1939 106 23 30 chr9 140309233 140309536 -1961908 - AluSx SINE Alu -1 311 11 1052 110 0 0 chr9 140309546 140309692 -1961752 - AluSq SINE Alu -20 293 148 575 92 0 0 chr9 140309692 140309768 -1961676 - Alu SINE Alu -232 77 2 2213 79 0 20 chr9 140309769 140310072 -1961372 - AluSc SINE Alu -12 297 1 2316 62 0 3 chr9 140310608 140310899 -1960545 + AluY SINE Alu 6 295 -16 1078 153 0 11 chr9 140310899 140311076 -1960368 + AluSg/x SINE Alu 134 308 -4 1507 247 50 5 chr9 140311394 140311835 -1959609 - L1MB5 LINE L1 -1 6173 5713 697 111 0 0 chr9 140312100 140312190 -1959254 - AluSp/q SINE Alu -30 283 194 1538 183 16 10 chr9 140312540 140312846 -1958598 + AluJo SINE Alu 1 308 -4 1954 117 17 0 chr9 140312847 140313137 -1958307 + AluSg SINE Alu 1 295 -15 351 301 118 16 chr9 140313630 140313876 -1957568 - MLT1G LTR MaLR -300 290 20 202 258 0 21 chr9 140314401 140314498 -1956946 + (CA)n Simple_repeat Simple_repeat 2 96 0 234 281 0 20 chr9 140314548 140314694 -1956750 + (CA)n Simple_repeat Simple_repeat 1 143 0 194 169 42 14 chr9 140314712 140314783 -1956661 + (CA)n Simple_repeat Simple_repeat 1 73 0 2489 54 0 0 chr9 140318796 140319093 -1952351 - AluY SINE Alu -14 297 1 2301 90 0 1 chr9 140321085 140321397 -1950047 + AluY SINE Alu 1 299 -12 1725 154 3 62 chr9 140321578 140321903 -1949541 - AluJo SINE Alu -6 306 1 1459 198 49 0 chr9 140322071 140322359 -1949085 + AluJo SINE Alu 2 303 -9 226 230 103 11 chr9 140322364 140322451 -1948993 + L1M LINE L1 5332 5426 -877 2478 66 0 0 chr9 140322451 140322755 -1948689 + AluY SINE Alu 1 304 -7 304 250 10 42 chr9 140322814 140322910 -1948534 + Alu SINE Alu 207 299 -1 237 275 67 25 chr9 140323070 140323190 -1948254 + L1M4 LINE L1 4957 5081 -1065 2204 108 3 3 chr9 140323194 140323499 -1947945 - AluSg1 SINE Alu -4 305 1 356 333 63 53 chr9 140323586 140323793 -1947651 + L1M4 LINE L1 5195 5403 -743 907 83 15 8 chr9 140323885 140324017 -1947427 + AluSg SINE Alu 18 150 -160 1886 130 27 0 chr9 140325523 140325822 -1945622 + AluJo SINE Alu 1 307 -5 257 182 40 51 chr9 140326080 140326256 -1945188 + (CACCT)n Simple_repeat Simple_repeat 4 177 0 2510 43 0 3 chr9 140326894 140327194 -1944250 + AluY SINE Alu 1 299 -12 2286 85 0 0 chr9 140327720 140328015 -1943429 + AluSx SINE Alu 1 295 -17 340 238 197 51 chr9 140328887 140328964 -1942480 + L1MEd LINE L1 23 87 -6032 1683 141 29 33 chr9 140328964 140329270 -1942174 + AluJo SINE Alu 1 305 -7 340 238 197 51 chr9 140329270 140329507 -1941937 + L1MEd LINE L1 87 383 -5736 5628 91 31 12 chr9 140329518 140329731 -1941713 + L1PA10 LINE L1 5138 5346 -822 1484 85 0 10 chr9 140329731 140329930 -1941514 + AluSx SINE Alu 1 197 -115 5628 91 31 12 chr9 140329930 140330729 -1940715 + L1PA10 LINE L1 5346 6163 -5 1944 96 0 4 chr9 140333839 140334099 -1937345 - AluSq SINE Alu -8 305 47 301 169 84 12 chr9 140334200 140334283 -1937161 - L1MD3 LINE L1 -14 7981 7893 1780 138 41 7 chr9 140335389 140335679 -1935765 + AluSx SINE Alu 11 310 -2 513 322 75 45 chr9 140335747 140336101 -1935343 + HAL1 LINE L1 1011 1445 -1062 1151 224 102 66 chr9 140336438 140336880 -1934564 + MLT1E3 LTR MaLR 161 618 -6 457 294 98 18 chr9 140336928 140337403 -1934041 + HAL1 LINE L1 1836 2387 -120 1532 160 8 19 chr9 140337403 140337665 -1933779 + AluJb SINE Alu 1 259 -53 1096 132 0 6 chr9 140337677 140337836 -1933608 - AluJb SINE Alu -154 158 1 1234 148 0 0 chr9 140337921 140338110 -1933334 + AluJo SINE Alu 123 311 -1 2231 91 0 3 chr9 140338118 140338437 -1933007 + AluSq SINE Alu 1 318 0 979 180 146 0 chr9 140339285 140339491 -1931953 - MER46A DNA MER2_type 0 236 1 2026 107 3 35 chr9 140339890 140340208 -1931236 - AluSc SINE Alu -1 308 1 2286 104 0 3 chr9 140340446 140340755 -1930689 + AluSx SINE Alu 1 308 -4 1708 146 47 0 chr9 140340765 140341040 -1930404 + AluJb SINE Alu 1 288 -24 300 83 0 0 chr9 140343173 140343221 -1928223 + (CACAG)n Simple_repeat Simple_repeat 2 49 0 1404 140 0 5 chr9 140344360 140344582 -1926862 - AluSg/x SINE Alu -7 305 85 2337 86 0 3 chr9 140344635 140344937 -1926507 - AluY SINE Alu -10 301 1 2300 84 3 10 chr9 140345952 140346263 -1925181 - AluSc SINE Alu 0 309 1 21 71 0 0 chr9 140347753 140347795 -1923649 + GC_rich Low_complexity Low_complexity 1 42 0 774 231 64 0 chr9 140347968 140348202 -1923242 + Charlie5 DNA MER1_type 2376 2624 0 188 293 69 0 chr9 140348226 140348284 -1923160 + MER5A DNA MER1_type 128 189 0 1992 151 100 2 chr9 140348377 140348787 -1922657 + MER31A LTR ERV1 1 450 -35 445 358 89 0 chr9 140349409 140349736 -1921708 - L2 LINE L2 -728 2586 2231 1270 143 18 22 chr9 140349736 140349959 -1921485 + AluJo SINE Alu 85 306 -6 538 287 72 0 chr9 140350891 140351100 -1920344 + REP3 LTR ERV 34 257 -305 811 228 166 47 chr9 140351101 140351504 -1919940 - MLT1D LTR MaLR -21 484 34 189 0 0 0 chr9 140351736 140351757 -1919687 + (GCCTG)n Simple_repeat Simple_repeat 3 23 0 2065 135 3 0 chr9 140352257 140352568 -1918876 - AluSx SINE Alu 0 312 1 185 128 0 26 chr9 140352672 140352711 -1918733 + (CCCCAG)n Simple_repeat Simple_repeat 1 38 0 243 224 224 17 chr9 140352858 140352974 -1918470 + LTR16A LTR ERVL 301 440 -10 288 352 19 0 chr9 140352989 140353097 -1918347 - L2 LINE L2 -1 3312 3203 376 239 18 9 chr9 140353144 140353257 -1918187 - LTR67 LTR ERVL -15 542 429 385 230 48 24 chr9 140353318 140353483 -1917961 + (CCCCAG)n Simple_repeat Simple_repeat 2 170 0 483 220 7 13 chr9 140354149 140354299 -1917145 + (TG)n Simple_repeat Simple_repeat 1 149 0 270 253 11 23 chr9 140354348 140354522 -1916922 + (TG)n Simple_repeat Simple_repeat 1 172 0 183 355 32 11 chr9 140354652 140354745 -1916699 - L2 LINE L2 -210 3062 2968 662 224 107 79 chr9 140355044 140355424 -1916020 - MLT1C LTR MaLR -12 378 23 550 209 23 31 chr9 140356288 140356417 -1915027 + MIR SINE MIR 16 143 -119 370 93 0 53 chr9 140358681 140358756 -1912688 - L1MB3 LINE L1 0 6183 6113 811 143 0 0 chr9 140358760 140358886 -1912558 - AluSg/x SINE Alu -2 307 182 203 237 0 0 chr9 140359021 140359059 -1912385 + C-rich Low_complexity Low_complexity 5 42 0 1579 158 7 37 chr9 140359710 140360008 -1911436 + AluJo SINE Alu 11 299 -13 1921 98 7 18 chr9 140362198 140362541 -1908903 - AluSx SINE Alu 0 353 14 1120 66 0 0 chr9 140362545 140362682 -1908762 - AluSq/x SINE Alu -175 137 1 1502 259 57 19 chr9 140362683 140363246 -1908198 - L1MC3 LINE L1 -331 7454 6871 255 122 0 0 chr9 140363288 140363329 -1908115 - L1MB2 LINE L1 -2 6169 6129 2102 113 0 0 chr9 140363329 140363620 -1907824 - AluSx SINE Alu -21 291 1 1052 89 0 0 chr9 140363620 140363755 -1907689 - AluSq/x SINE Alu -177 135 1 1339 173 53 61 chr9 140363755 140364097 -1907347 - L1MB3 LINE L1 -41 6142 5804 2610 228 76 15 chr9 140364121 140364868 -1906576 + MER21B LTR ERV1 2 794 -69 1995 101 20 10 chr9 140366391 140366689 -1904755 - AluSx SINE Alu -11 301 1 195 267 33 0 chr9 140366976 140367036 -1904408 - MIR3 SINE MIR -51 157 96 192 315 54 22 chr9 140368395 140368487 -1902957 - MIR SINE MIR -117 145 51 22 0 0 0 chr9 140369618 140369640 -1901804 + AT_rich Low_complexity Low_complexity 1 22 0 709 240 61 74 chr9 140370686 140371065 -1900379 - MLT1C LTR MaLR -16 374 1 2030 105 3 7 chr9 140371177 140371514 -1899930 + AluSx SINE Alu 1 336 0 2145 128 0 0 chr9 140373452 140373788 -1897656 + AluSx SINE Alu 1 336 0 200 200 0 0 chr9 140374693 140374728 -1896716 + (TG)n Simple_repeat Simple_repeat 1 35 0 232 291 76 13 chr9 140375570 140375649 -1895795 + MIR SINE MIR 60 143 -65 186 338 52 13 chr9 140376990 140377067 -1894377 + MIR SINE MIR 6 85 -177 874 208 26 56 chr9 140377088 140377357 -1894087 - L1MB5 LINE L1 0 6174 5914 192 152 0 0 chr9 140377391 140377424 -1894020 + T-rich Low_complexity Low_complexity 1 33 0 689 102 0 0 chr9 140377424 140377522 -1893922 - L1PA5 LINE L1 -1 6153 6056 2049 58 94 0 chr9 140377628 140377903 -1893541 - AluY SINE Alu -6 305 5 224 295 171 9 chr9 140378496 140378601 -1892843 - MIR SINE MIR -109 153 32 326 272 116 46 chr9 140378607 140378780 -1892664 + MER91A DNA MER1_type 4 188 -8 279 346 69 0 chr9 140379341 140379471 -1891973 - MIR SINE MIR -37 225 87 510 152 20 20 chr9 140381372 140381471 -1889973 - AluSc SINE Alu -7 302 204 995 62 69 0 chr9 140381478 140381608 -1889836 - AluSq/x SINE Alu -165 148 10 2332 56 0 3 chr9 140381915 140382244 -1889200 + AluY SINE Alu 1 328 0 25 0 0 0 chr9 140382918 140382943 -1888501 + GC_rich Low_complexity Low_complexity 1 25 0 2470 74 0 0 chr9 140383877 140384188 -1887256 - AluSx SINE Alu -1 311 1 664 272 86 14 chr9 140384203 140384493 -1886951 - L1MB3 LINE L1 -33 6150 5840 238 348 76 33 chr9 140387963 140388173 -1883271 - L2 LINE L2 -251 3062 2844 198 143 0 0 chr9 140388290 140388325 -1883119 + (AGGGGG)n Simple_repeat Simple_repeat 4 38 0 180 179 0 0 chr9 140389543 140389582 -1881862 + (CA)n Simple_repeat Simple_repeat 1 39 0 702 202 0 0 chr9 140389603 140389776 -1881668 + (CA)n Simple_repeat Simple_repeat 1 173 0 23 0 0 0 chr9 140390898 140390921 -1880523 + GC_rich Low_complexity Low_complexity 1 23 0 198 143 0 0 chr9 140393127 140393162 -1878282 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 82 0 0 chr9 140393745 140393794 -1877650 + GC_rich Low_complexity Low_complexity 1 49 0 249 33 0 0 chr9 140394849 140394879 -1876565 + (T)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr9 140394979 140395002 -1876442 + GC_rich Low_complexity Low_complexity 1 23 0 191 77 0 51 chr9 140396235 140396274 -1875170 + (AGGGGG)n Simple_repeat Simple_repeat 2 38 0 1596 160 57 4 chr9 140396505 140396786 -1874658 - AluJo SINE Alu -16 296 1 207 0 0 0 chr9 140398396 140398419 -1873025 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 718 304 54 3 chr9 140402041 140402357 -1869087 + L1MB3 LINE L1 5849 6180 -3 1518 256 91 71 chr9 140402861 140404120 -1867324 + L1MD2 LINE L1 4722 5990 -369 239 300 62 0 chr9 140404966 140405046 -1866398 - HsTC2 DNA Tc2 -19 1879 1795 818 75 46 23 chr9 140405212 140405385 -1866059 + GA-rich Low_complexity Low_complexity 2 178 0 215 114 23 0 chr9 140406508 140406552 -1864892 + (TG)n Simple_repeat Simple_repeat 1 45 0 270 0 0 0 chr9 140406635 140406665 -1864779 + (TG)n Simple_repeat Simple_repeat 1 30 0 764 312 75 74 chr9 140407487 140407567 -1863877 + L1ME1 LINE L1 1085 1163 -5367 242 0 61 0 chr9 140407567 140407600 -1863844 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 764 312 75 74 chr9 140407600 140407763 -1863681 + L1ME1 LINE L1 1163 1324 -5206 1861 147 10 10 chr9 140407763 140408063 -1863381 + AluSx SINE Alu 1 300 -12 764 312 75 74 chr9 140408063 140408190 -1863254 + L1ME1 LINE L1 1324 1449 -5081 2240 108 0 9 chr9 140408190 140408506 -1862938 + AluSq SINE Alu 1 313 0 764 312 75 74 chr9 140408506 140408702 -1862742 + L1ME1 LINE L1 1449 1666 -4864 568 329 112 42 chr9 140408729 140409079 -1862365 + L1ME1 LINE L1 2189 2627 -4013 2043 115 14 0 chr9 140409079 140409374 -1862070 + AluSx SINE Alu 1 299 -13 568 329 112 42 chr9 140409374 140409469 -1861975 + L1ME1 LINE L1 2627 2714 -3926 750 251 133 20 chr9 140409568 140410110 -1861334 + L1ME1 LINE L1 3080 3682 -2858 293 100 0 14 chr9 140410110 140410362 -1861082 + AluSq SINE Alu 1 301 -1 331 238 24 0 chr9 140410410 140410494 -1860950 - MER58C DNA MER1_type -3 212 127 921 156 7 0 chr9 140410500 140410654 -1860790 - AluSx SINE Alu -3 309 155 974 176 0 70 chr9 140410654 140410881 -1860563 + MER52A LTR ERV1 3 213 -1542 6279 166 98 9 chr9 140410892 140412156 -1859288 + MER52A LTR ERV1 379 1755 0 972 161 0 0 chr9 140412158 140412307 -1859137 - AluSx SINE Alu -163 149 1 322 243 0 0 chr9 140412327 140412397 -1859047 - MER58C DNA MER1_type -116 99 30 2385 67 0 3 chr9 140412460 140412760 -1858684 + AluY SINE Alu 1 299 -12 1820 149 7 7 chr9 140412804 140413093 -1858351 - AluSx SINE Alu -23 289 1 575 308 21 7 chr9 140413107 140413386 -1858058 + L1ME1 LINE L1 3779 4061 -2479 270 0 0 0 chr9 140413457 140413487 -1857957 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 2117 113 0 0 chr9 140413487 140413770 -1857674 - AluSx SINE Alu -29 283 1 697 306 20 23 chr9 140414308 140414661 -1856783 + L1ME1 LINE L1 4138 4489 -2051 417 292 126 67 chr9 140414662 140414747 -1856697 + L1ME1 LINE L1 4520 4599 -1941 1935 133 3 11 chr9 140414747 140414884 -1856560 + AluSx SINE Alu 1 137 -176 1869 108 54 7 chr9 140414884 140415161 -1856283 + AluSg SINE Alu 3 292 -18 1935 133 3 11 chr9 140415161 140415338 -1856106 + AluSx SINE Alu 137 313 0 417 292 126 67 chr9 140415338 140415493 -1855951 + L1ME1 LINE L1 4599 4743 -1797 2223 84 3 22 chr9 140415493 140415804 -1855640 + AluSx SINE Alu 1 305 -7 417 292 126 67 chr9 140415804 140416027 -1855417 + L1ME1 LINE L1 4743 4951 -1589 423 0 0 0 chr9 140416027 140416074 -1855370 + (TG)n Simple_repeat Simple_repeat 1 47 0 417 292 126 67 chr9 140416074 140416447 -1854997 + L1ME1 LINE L1 4951 5409 -1131 2332 244 187 24 chr9 140416503 140416944 -1854500 + L1MC4 LINE L1 6499 6867 -1175 2134 117 0 0 chr9 140416944 140417242 -1854202 + AluSx SINE Alu 1 298 -14 2332 244 187 24 chr9 140417242 140418047 -1853397 + L1MC4 LINE L1 6867 8039 -3 467 283 91 27 chr9 140418069 140418422 -1853022 + L1ME1 LINE L1 5440 5836 -722 621 309 46 90 chr9 140418448 140418905 -1852539 + L1MEc LINE L1 939 1375 -5188 433 281 98 39 chr9 140418932 140419288 -1852156 + L1MEc LINE L1 1286 1662 -4722 1219 101 30 0 chr9 140419362 140419530 -1851914 - AluSg/x SINE Alu -16 294 122 343 214 201 38 chr9 140419530 140419639 -1851805 - L1ME LINE L1 -372 5794 5704 2209 113 0 3 chr9 140419639 140419941 -1851503 - AluSx SINE Alu -11 301 1 343 214 201 38 chr9 140419941 140419990 -1851454 - L1ME LINE L1 -462 5704 5610 1059 228 157 52 chr9 140419993 140420386 -1851058 + L1ME1 LINE L1 6043 6494 -66 1828 169 0 13 chr9 140420386 140420693 -1850751 + AluJb SINE Alu 1 303 -9 1059 228 157 52 chr9 140420693 140420765 -1850679 + L1ME1 LINE L1 6494 6557 -3 794 289 106 14 chr9 140420823 140421332 -1850112 + L1MEc LINE L1 2086 2641 -3922 1041 272 78 53 chr9 140421464 140422196 -1849248 + L1MEc LINE L1 3719 4557 -1825 2335 78 0 0 chr9 140422196 140422489 -1848955 + AluY SINE Alu 1 293 -18 1041 272 78 53 chr9 140422489 140422613 -1848831 + L1MEc LINE L1 4557 4676 -1706 803 190 24 24 chr9 140422608 140422810 -1848634 + L1MB8 LINE L1 5616 5820 -358 * 1754 165 13 25 chr9 140422810 140423126 -1848318 + AluJb SINE Alu 1 312 0 713 70 23 58 chr9 140423095 140423266 -1848178 + (GGAA)n Simple_repeat Simple_repeat 1 165 0 1984 133 19 3 chr9 140423273 140423581 -1847863 + AluSq SINE Alu 1 313 0 1137 229 75 15 chr9 140423581 140423913 -1847531 + L1MB8 LINE L1 5822 6173 -5 1133 285 68 8 chr9 140423963 140424133 -1847311 + L1M4 LINE L1 4498 4656 -1490 2058 111 24 0 chr9 140424133 140424421 -1847023 - AluSx SINE Alu -17 295 1 1133 285 68 8 chr9 140424421 140424761 -1846683 + L1M4 LINE L1 4656 5047 -1099 753 142 0 0 chr9 140424763 140424932 -1846512 + (CA)n Simple_repeat Simple_repeat 2 170 0 570 179 0 0 chr9 140424962 140425130 -1846314 + (CA)n Simple_repeat Simple_repeat 1 168 0 512 283 17 11 chr9 140425191 140425368 -1846076 + L1M4 LINE L1 5069 5246 -900 319 285 91 48 chr9 140430503 140430668 -1840776 - L1MEc LINE L1 -4146 2250 2079 1047 259 97 15 chr9 140430899 140431354 -1840090 - L1MB3 LINE L1 -28 6155 5664 362 319 108 36 chr9 140431354 140431520 -1839924 - L1MC4 LINE L1 -412 7630 7453 336 218 179 26 chr9 140432380 140432536 -1838908 - MLT1C LTR MaLR -276 191 12 1304 228 66 53 chr9 140436030 140436191 -1835253 - L1MB3 LINE L1 -975 5171 5014 2055 104 14 4 chr9 140436191 140436493 -1834951 - AluSp SINE Alu 0 305 1 186 43 0 0 chr9 140436493 140436516 -1834928 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1694 176 3 3 chr9 140436516 140436800 -1834644 - AluSx SINE Alu -28 284 1 2276 103 0 0 chr9 140436806 140437108 -1834336 - AluSq SINE Alu -11 302 1 1304 228 66 53 chr9 140437108 140437484 -1833960 - L1MB3 LINE L1 -1136 5010 4617 * 2774 238 85 19 chr9 140437466 140437497 -1833947 - L1MB3 LINE L1 -2754 3392 3365 2232 118 0 0 chr9 140437497 140437801 -1833643 - AluSg SINE Alu -6 304 1 1974 121 3 35 chr9 140437801 140438115 -1833329 - AluSx SINE Alu -7 305 2 2774 238 85 19 chr9 140438115 140438526 -1832918 - L1MB3 LINE L1 -2781 3365 2983 2291 77 3 13 chr9 140438526 140438838 -1832606 - AluSg1 SINE Alu 0 309 1 2774 238 85 19 chr9 140438838 140439472 -1831972 - L1MB3 LINE L1 -3163 2983 2242 320 0 25 0 chr9 140439475 140439515 -1831929 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1913 102 7 14 chr9 140439517 140439800 -1831644 - AluSq SINE Alu -32 281 1 226 214 0 0 chr9 140439803 140439859 -1831585 + L1MDa LINE L1 2589 2644 -3896 985 181 10 16 chr9 140442290 140442483 -1828961 - AluJo SINE Alu -114 198 7 1981 139 7 0 chr9 140442599 140442902 -1828542 + AluSx SINE Alu 1 305 -7 367 388 106 4 chr9 140442912 140443185 -1828259 - L1ME1 LINE L1 -40 6126 5826 486 282 13 43 chr9 140443206 140443440 -1828004 - L1ME1 LINE L1 -615 5549 5323 490 276 32 0 chr9 140444216 140444372 -1827072 + LTR37B LTR ERV1 197 357 -111 1270 224 45 14 chr9 140444390 140444748 -1826696 + L1MB3 LINE L1 5814 6182 -1 2153 51 15 7 chr9 140444760 140445056 -1826388 + AluY SINE Alu 9 306 0 1454 137 47 93 chr9 140445058 140445379 -1826065 + AluJo SINE Alu 1 306 -6 409 304 52 70 chr9 140445408 140445676 -1825768 + L1M4 LINE L1 5105 5360 -786 1085 44 0 30 chr9 140445962 140446097 -1825347 - AluSg SINE Alu -179 131 1 318 305 76 0 chr9 140446466 140446571 -1824873 - MIR SINE MIR -58 204 92 1238 95 24 0 chr9 140448420 140448589 -1822855 + AluSp SINE Alu 111 283 -30 189 0 0 0 chr9 140453016 140453037 -1818407 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 1099 210 32 0 chr9 140455898 140456117 -1815327 + L1PA16 LINE L1 5941 6166 0 2063 105 30 20 chr9 140459196 140459473 -1811971 + AluSx SINE Alu 1 283 -29 570 15 0 0 chr9 140459473 140459540 -1811904 + (CAGGA)n Simple_repeat Simple_repeat 4 70 0 2063 105 30 20 chr9 140459540 140459566 -1811878 + AluSx SINE Alu 283 307 -5 364 279 105 28 chr9 140459742 140459989 -1811455 + LTR37B LTR ERV1 196 461 -7 1744 178 3 7 chr9 140459990 140460294 -1811150 + AluJb SINE Alu 1 303 -9 2236 100 3 3 chr9 140460958 140461269 -1810175 + AluSx SINE Alu 1 311 -1 1893 172 0 0 chr9 140461363 140461665 -1809779 + AluJo SINE Alu 1 302 -10 4017 201 39 41 chr9 140461676 140462560 -1808884 + L1MB8 LINE L1 4256 5140 -1038 1766 139 15 59 chr9 140462560 140462694 -1808750 + AluJb SINE Alu 1 139 -173 2079 147 0 0 chr9 140462694 140463006 -1808438 + AluSx SINE Alu 1 312 0 1766 139 15 59 chr9 140463006 140463195 -1808249 + AluJb SINE Alu 139 310 -2 4017 201 39 41 chr9 140463195 140463268 -1808176 + L1MB8 LINE L1 5140 5212 -966 2153 125 6 0 chr9 140463268 140463579 -1807865 + AluSq SINE Alu 1 313 0 4017 201 39 41 chr9 140463579 140464325 -1807119 + L1MB8 LINE L1 5212 5959 -219 2044 88 3 53 chr9 140464325 140464643 -1806801 + AluSp SINE Alu 1 302 -11 4017 201 39 41 chr9 140464643 140464783 -1806661 + L1MB8 LINE L1 5959 6098 -80 2215 175 45 92 chr9 140464784 140464913 -1806531 - MER7C DNA MER2_type -2431 597 463 2187 78 10 0 chr9 140464913 140465207 -1806237 + AluSc SINE Alu 1 297 -12 2215 175 45 92 chr9 140465207 140465572 -1805872 - MER7C DNA MER2_type -2565 463 135 1654 160 3 16 chr9 140465572 140465879 -1805565 + AluSq SINE Alu 1 303 -10 2215 175 45 92 chr9 140465879 140466000 -1805444 - MER7C DNA MER2_type -2893 135 10 415 152 43 22 chr9 140466001 140466093 -1805351 + L1MB7 LINE L1 6091 6184 0 598 152 141 0 chr9 140466094 140466278 -1805166 + L1MDa LINE L1 2384 2593 -3947 1449 128 64 4 chr9 140466280 140466514 -1804930 - AluSq SINE Alu -15 298 51 28 48 0 0 chr9 140466642 140466684 -1804760 + GC_rich Low_complexity Low_complexity 1 42 0 935 285 53 25 chr9 140467339 140467735 -1803709 + MLT1C LTR MaLR 60 466 -1 195 303 38 52 chr9 140468037 140468178 -1803266 - MIR SINE MIR -69 139 12 24 32 0 0 chr9 140470161 140470192 -1801252 + AT_rich Low_complexity Low_complexity 1 31 0 55 92 0 0 chr9 140475295 140475448 -1795996 + GC_rich Low_complexity Low_complexity 1 153 0 22 0 0 0 chr9 140475541 140475563 -1795881 + GC_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr9 140475578 140475630 -1795814 + GC_rich Low_complexity Low_complexity 1 52 0 36 53 0 0 chr9 140475691 140475748 -1795696 + GC_rich Low_complexity Low_complexity 1 57 0 25 0 0 0 chr9 140475759 140475784 -1795660 + GC_rich Low_complexity Low_complexity 1 25 0 27 62 0 0 chr9 140476086 140476134 -1795310 + GC_rich Low_complexity Low_complexity 1 48 0 234 0 0 0 chr9 140476881 140476907 -1794537 + (CA)n Simple_repeat Simple_repeat 2 27 0 267 271 85 34 chr9 140477503 140477587 -1793857 - MIR SINE MIR -25 237 144 2331 97 0 0 chr9 140477587 140477896 -1793548 - AluSx SINE Alu -3 309 1 267 271 85 34 chr9 140477896 140477929 -1793515 - MIR SINE MIR -118 144 114 479 294 50 56 chr9 140478423 140478932 -1792512 + L2 LINE L2 2571 3073 -240 204 232 54 18 chr9 140479012 140479068 -1792376 + L2 LINE L2 3189 3246 -26 229 227 18 49 chr9 140479999 140480162 -1791282 + G-rich Low_complexity Low_complexity 4 161 0 204 125 0 0 chr9 140480407 140480439 -1791005 + (T)n Simple_repeat Simple_repeat 1 32 0 419 240 10 0 chr9 140480445 140480545 -1790899 - L1MB5 LINE L1 0 6174 6074 228 264 90 58 chr9 140482355 140482510 -1788934 + L2 LINE L2 2930 3089 -183 2165 67 13 24 chr9 140483341 140483639 -1787805 - AluY SINE Alu -16 295 1 1156 30 0 0 chr9 140483641 140483773 -1787671 - AluY SINE Alu -179 132 1 2330 83 0 0 chr9 140486715 140487017 -1784427 - AluSx SINE Alu -10 302 1 24 0 0 0 chr9 140487577 140487601 -1783843 + GC_rich Low_complexity Low_complexity 1 24 0 285 268 16 16 chr9 140489507 140489630 -1781814 + C-rich Low_complexity Low_complexity 2 124 0 619 110 39 71 chr9 140492717 140492844 -1778600 + AluJb SINE Alu 190 312 0 227 318 35 0 chr9 140492942 140493027 -1778417 - MER3 DNA MER1_type -113 96 9 1545 170 16 39 chr9 140493595 140493901 -1777543 - AluJo SINE Alu -13 299 1 720 102 10 0 chr9 140494096 140494194 -1777250 - AluJ SINE Alu -13 299 201 * 814 180 0 0 chr9 140494187 140494315 -1777129 - AluJ SINE Alu -153 159 32 2110 124 0 0 chr9 140494480 140494779 -1776665 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr9 140497375 140497396 -1774048 + GC_rich Low_complexity Low_complexity 1 21 0 309 347 69 0 chr9 140498064 140498208 -1773236 + MIR SINE MIR 28 181 -81 24 32 0 0 chr9 140498829 140498860 -1772584 + GC_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr9 140498970 140499013 -1772431 + GC_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr9 140499341 140499364 -1772080 + (CGTG)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr9 140499922 140499945 -1771499 + GC_rich Low_complexity Low_complexity 1 23 0 782 153 8 8 chr9 140500450 140500574 -1770870 + FLAM_C SINE Alu 9 132 -11 337 205 162 34 chr9 140500676 140500793 -1770651 + AluJb SINE Alu 1 132 -170 412 183 49 0 chr9 140501575 140501657 -1769787 - MER69 DNA AcHobo 0 2526 2441 2177 82 6 32 chr9 140501753 140502069 -1769375 + AluY SINE Alu 1 308 -3 364 200 83 83 chr9 140502147 140502267 -1769177 + L1ME4a LINE L1 5974 6093 -28 227 328 49 25 chr9 140504358 140504480 -1766964 + MLT1H1 LTR MaLR 67 191 -364 216 97 0 0 chr9 140504563 140504594 -1766850 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 1361 152 23 15 chr9 140504600 140504863 -1766581 + MLT1B LTR MaLR 109 373 -17 1185 110 0 6 chr9 140505517 140505762 -1765682 + (TTGG)n Simple_repeat Simple_repeat 1 422 0 1185 83 0 0 chr9 140505762 140505942 -1765502 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 486 197 0 0 chr9 140508222 140508349 -1763095 + GA-rich Low_complexity Low_complexity 1 127 0 682 311 19 26 chr9 140508610 140508877 -1762567 - L1ME4a LINE L1 -187 5934 5670 693 223 95 0 chr9 140509322 140509533 -1761911 + L1MB3 LINE L1 5953 6183 0 2258 102 0 0 chr9 140510062 140510378 -1761066 - AluSq SINE Alu 0 316 1 888 178 71 0 chr9 140510495 140510720 -1760724 - L1MB3 LINE L1 0 6183 5943 245 324 104 46 chr9 140511203 140511444 -1760000 + L2 LINE L2 2923 3177 -95 21 82 0 0 chr9 140513121 140513170 -1758274 + GC_rich Low_complexity Low_complexity 1 49 0 312 351 67 0 chr9 140514391 140514525 -1756919 + MIR SINE MIR 28 170 -92 23 33 0 0 chr9 140515148 140515178 -1756266 + GC_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr9 140515646 140515668 -1755776 + (CGTG)n Simple_repeat Simple_repeat 4 25 0 223 200 13 13 chr9 140516092 140516167 -1755277 + C-rich Low_complexity Low_complexity 4 78 0 204 117 0 108 chr9 140516178 140516289 -1755155 + (CCCCG)n Simple_repeat Simple_repeat 3 101 0 558 161 0 0 chr9 140516614 140516726 -1754718 + GA-rich Low_complexity Low_complexity 1 112 0 1676 164 9 41 chr9 140517456 140517773 -1753671 + AluJb SINE Alu 1 307 -5 2284 85 0 0 chr9 140517785 140518079 -1753365 - AluSx SINE Alu -18 294 1 542 244 26 0 chr9 140518079 140518313 -1753131 - L1MC1 LINE L1 -8 6325 5961 504 133 0 0 chr9 140521230 140521313 -1750131 + (TCCCC)n Simple_repeat Simple_repeat 1 83 0 2348 86 3 6 chr9 140522005 140522319 -1749125 - AluSp SINE Alu 0 313 1 1768 170 10 19 chr9 140522348 140522659 -1748785 + AluJo SINE Alu 1 308 -4 2125 98 0 0 chr9 140522690 140522965 -1748479 + AluSx SINE Alu 1 275 -37 516 32 0 0 chr9 140522976 140523038 -1748406 + (AATAG)n Simple_repeat Simple_repeat 2 63 0 770 224 30 5 chr9 140523047 140523293 -1748151 + L1MB8 LINE L1 5566 5822 -362 1547 141 16 4 chr9 140523294 140523407 -1748037 - AluJo SINE Alu -60 252 142 2030 131 3 3 chr9 140523407 140523713 -1747731 - AluSx SINE Alu -6 306 1 1547 141 16 4 chr9 140523713 140523848 -1747596 - AluJo SINE Alu -170 142 1 328 167 0 0 chr9 140523849 140523915 -1747529 - MLT2B1 LTR ERVL -453 67 2 717 260 146 0 chr9 140523916 140524197 -1747247 - L1MB3 LINE L1 -40 6143 5822 812 189 0 7 chr9 140524197 140524345 -1747099 + L1MB8 LINE L1 6027 6173 -5 2101 120 20 0 chr9 140524362 140524663 -1746781 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr9 140524666 140524687 -1746757 + AT_rich Low_complexity Low_complexity 1 21 0 206 356 85 0 chr9 140526353 140526471 -1744973 + MIR3 SINE MIR 58 185 -23 196 308 0 0 chr9 140527109 140527161 -1744283 + MIR SINE MIR 93 144 -118 264 256 179 17 chr9 140528950 140529067 -1742377 + MIR SINE MIR 79 214 -48 217 182 15 15 chr9 140529468 140529534 -1741910 + (TG)n Simple_repeat Simple_repeat 1 66 0 381 288 37 28 chr9 140530905 140531066 -1740378 - MIR3 SINE MIR -36 172 29 1284 95 2 2 chr9 140533334 140533981 -1737463 + (TGAG)n Simple_repeat Simple_repeat 1 647 0 233 382 6 6 chr9 140535245 140535415 -1736029 + (CTGGGG)n Simple_repeat Simple_repeat 6 175 0 225 351 0 0 chr9 140536282 140536359 -1735085 - MIR SINE MIR -117 145 69 245 357 140 6 chr9 140536625 140536782 -1734662 + MIR SINE MIR 63 240 -22 300 256 58 44 chr9 140536917 140537054 -1734390 - L1MC4a LINE L1 -1691 6117 5979 213 263 0 95 chr9 140537058 140537248 -1734196 + CT-rich Low_complexity Low_complexity 1 172 0 293 249 0 83 chr9 140537280 140537553 -1733891 + CT-rich Low_complexity Low_complexity 1 250 0 256 303 18 42 chr9 140537565 140537730 -1733714 + C-rich Low_complexity Low_complexity 1 161 0 228 338 96 7 chr9 140538074 140538210 -1733234 + L1ME LINE L1 5766 5913 -208 1366 262 41 45 chr9 140538562 140538925 -1732519 + L1MB7 LINE L1 5649 6011 -173 2127 113 3 0 chr9 140538925 140539218 -1732226 - AluSx SINE Alu -17 295 2 1366 262 41 45 chr9 140539218 140539392 -1732052 + L1MB7 LINE L1 6011 6184 0 210 71 0 0 chr9 140542033 140542061 -1729383 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 483 205 30 6 chr9 140544322 140544488 -1726956 + (TG)n Simple_repeat Simple_repeat 1 170 0 207 156 0 0 chr9 140544700 140544732 -1726712 + C-rich Low_complexity Low_complexity 2 33 0 1675 184 7 0 chr9 140544732 140545026 -1726418 - AluJb SINE Alu -11 301 6 369 288 68 30 chr9 140545217 140545349 -1726095 + L2 LINE L2 3173 3309 -4 1944 106 64 11 chr9 140545352 140545469 -1725975 + AluSx SINE Alu 1 110 -202 2446 54 0 3 chr9 140545469 140545765 -1725679 + AluY SINE Alu 1 295 -16 1944 106 64 11 chr9 140545765 140545930 -1725514 + AluSx SINE Alu 110 298 -14 468 138 11 0 chr9 140545947 140546034 -1725410 - L1MB7 LINE L1 -2 6182 6095 1842 179 35 8 chr9 140546041 140546416 -1725028 - L1MB3 LINE L1 -2 6181 5797 352 194 146 35 chr9 140546417 140546561 -1724883 - L1MEc LINE L1 -4103 2293 2134 1252 198 0 4 chr9 140546567 140546794 -1724650 - AluJb SINE Alu 0 312 87 2101 132 3 3 chr9 140546809 140547150 -1724294 - AluSx SINE Alu 0 312 1 2508 284 88 72 chr9 140547150 140547293 -1724151 - L1MEc LINE L1 -4266 2130 1991 2274 92 7 0 chr9 140547293 140547588 -1723856 + AluSx SINE Alu 1 297 -15 2412 71 3 0 chr9 140547590 140547898 -1723546 + AluY SINE Alu 1 309 -2 2508 284 88 72 chr9 140547898 140548103 -1723341 - L1MEc LINE L1 -4405 1991 1791 1715 199 6 6 chr9 140548103 140548415 -1723029 - AluJb SINE Alu 0 312 1 2508 284 88 72 chr9 140548415 140548623 -1722821 - L1MEc LINE L1 -4605 1791 1588 1879 98 0 0 chr9 140548623 140548867 -1722577 + AluSx SINE Alu 38 281 -31 2508 284 88 72 chr9 140548867 140549128 -1722316 - L1MEc LINE L1 -4808 1588 1333 2110 98 0 21 chr9 140549128 140549445 -1721999 - AluSc SINE Alu 0 311 1 2508 284 88 72 chr9 140549445 140549473 -1721971 - L1MEc LINE L1 -5063 1333 1307 1715 156 34 17 chr9 140549473 140549768 -1721676 - AluJo SINE Alu -12 300 1 2508 284 88 72 chr9 140549768 140550000 -1721444 - L1MEc LINE L1 -5089 1307 1080 2339 87 0 3 chr9 140550000 140550310 -1721134 + AluSc SINE Alu 1 309 0 2508 284 88 72 chr9 140550310 140550540 -1720904 - L1MEc LINE L1 -5316 1080 855 2401 79 0 0 chr9 140550540 140550844 -1720600 - AluY SINE Alu -6 305 2 2508 284 88 72 chr9 140550844 140550894 -1720550 - L1MEc LINE L1 -5541 855 807 2530 37 0 7 chr9 140550894 140551192 -1720252 - AluY SINE Alu -15 296 1 2508 284 88 72 chr9 140551192 140551880 -1719564 - L1MEc LINE L1 -5589 807 36 219 250 54 11 chr9 140553604 140553696 -1717748 + MIR SINE MIR 50 145 -117 329 343 80 29 chr9 140554026 140554437 -1717007 + L2 LINE L2 2819 3250 -63 252 288 55 62 chr9 140555090 140555236 -1716208 + MIR3 SINE MIR 2 146 -62 918 208 131 81 chr9 140556239 140556720 -1714724 + MLT1D LTR MaLR 1 505 0 261 0 0 0 chr9 140559385 140559414 -1712030 + (T)n Simple_repeat Simple_repeat 1 29 0 1902 88 0 0 chr9 140559416 140559655 -1711789 - AluSq SINE Alu -74 239 1 188 260 96 0 chr9 140562066 140562139 -1709305 - MIR SINE MIR -57 151 72 29 0 0 0 chr9 140562453 140562482 -1708962 + AT_rich Low_complexity Low_complexity 1 29 0 2451 80 0 0 chr9 140564338 140564649 -1706795 + AluY SINE Alu 1 311 0 664 93 9 9 chr9 140564684 140564791 -1706653 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 435 135 11 11 chr9 140564900 140564989 -1706455 + GA-rich Low_complexity Low_complexity 2 90 0 1092 220 64 102 chr9 140566270 140566752 -1704692 - MLT1C LTR MaLR -3 464 1 2280 91 10 7 chr9 140566857 140567166 -1704278 + AluSq SINE Alu 1 310 -3 180 0 0 0 chr9 140567203 140567223 -1704221 + (TTTTTG)n Simple_repeat Simple_repeat 1 20 0 2372 71 0 0 chr9 140567426 140567720 -1703724 + AluSc SINE Alu 1 294 -15 232 389 11 0 chr9 140569864 140569954 -1701490 - MIR SINE MIR -63 199 109 186 260 0 96 chr9 140570408 140570512 -1700932 + MER5B DNA MER1_type 73 166 -12 1246 178 64 32 chr9 140571162 140571443 -1700001 + AluJb SINE Alu 1 290 -22 1392 191 3 50 chr9 140571480 140571800 -1699644 + AluJo SINE Alu 1 305 -7 2015 88 0 53 chr9 140571805 140572123 -1699321 + AluSg SINE Alu 1 301 -9 238 151 57 0 chr9 140572249 140572302 -1699142 + L1ME4a LINE L1 6062 6117 -4 189 0 0 0 chr9 140573247 140573268 -1698176 + (CCCCCT)n Simple_repeat Simple_repeat 1 21 0 308 151 38 0 chr9 140574139 140574192 -1697252 - L1MB5 LINE L1 -1 6173 6119 286 242 17 108 chr9 140574445 140574565 -1696879 - MIR3 SINE MIR -87 121 13 21 71 0 0 chr9 140577002 140577044 -1694400 + GC_rich Low_complexity Low_complexity 1 42 0 390 176 40 8 chr9 140577897 140578022 -1693422 + C-rich Low_complexity Low_complexity 5 133 0 2134 98 18 0 chr9 140578146 140578432 -1693012 + AluSq SINE Alu 1 291 -22 266 262 48 0 chr9 140578919 140579003 -1692441 - MIR SINE MIR -129 133 46 276 303 20 30 chr9 140581164 140581263 -1690181 - MIR SINE MIR -80 182 85 23 0 0 0 chr9 140582431 140582454 -1688990 + GC_rich Low_complexity Low_complexity 1 23 0 221 158 35 18 chr9 140586355 140586412 -1685032 + (CGGGG)n Simple_repeat Simple_repeat 1 58 0 279 224 0 24 chr9 140588314 140588399 -1683045 + C-rich Low_complexity Low_complexity 3 85 0 354 80 0 0 chr9 140590516 140590566 -1680878 + (CA)n Simple_repeat Simple_repeat 1 50 0 4431 155 84 14 chr9 140592830 140593674 -1677770 - MER4D LTR ERV1 0 903 1 235 286 10 31 chr9 140593800 140593898 -1677546 + MER5A DNA MER1_type 45 140 -49 238 289 21 41 chr9 140597013 140597110 -1674334 - L2 LINE L2 -60 3253 3159 1350 154 199 0 chr9 140597120 140597366 -1674078 + AluJb SINE Alu 1 295 -7 638 226 8 0 chr9 140597559 140597683 -1673761 - FLAM_A SINE Alu -8 125 1 182 305 136 8 chr9 140597758 140597876 -1673568 - L2 LINE L2 -515 2799 2667 619 296 43 32 chr9 140598335 140598588 -1672856 + LTR37B LTR ERV1 1 256 -212 475 299 52 13 chr9 140601330 140601484 -1669960 - MIR SINE MIR -66 196 37 213 346 37 0 chr9 140601550 140601631 -1669813 - L2 LINE L2 -218 3054 2971 3554 198 94 24 chr9 140602154 140603601 -1667843 - Tigger2 DNA MER2_type 0 2718 1134 1701 161 55 0 chr9 140603607 140603899 -1667545 - AluJb SINE Alu 0 312 5 1569 163 33 15 chr9 140603908 140604239 -1667205 - Tigger2 DNA MER2_type -2373 345 9 898 243 10 15 chr9 140604307 140604513 -1666931 + MER6B DNA MER2_type 5 209 -1 195 227 0 0 chr9 140604617 140604683 -1666761 + GA-rich Low_complexity Low_complexity 1 66 0 2254 77 0 0 chr9 140606271 140606556 -1664888 - AluSc SINE Alu -24 285 1 346 297 144 18 chr9 140608236 140608465 -1662979 + L1MC5 LINE L1 7101 7358 -603 1512 124 0 17 chr9 140608626 140608860 -1662584 - AluJb SINE Alu -80 232 3 265 316 22 22 chr9 140608943 140609079 -1662365 + L1MC5 LINE L1 7790 7925 -36 204 158 0 0 chr9 140610156 140610194 -1661250 + (CA)n Simple_repeat Simple_repeat 1 38 0 242 263 81 0 chr9 140611925 140612024 -1659420 - L1ME3A LINE L1 -5 6165 6059 193 133 67 0 chr9 140614949 140614994 -1656450 + L2 LINE L2 3225 3272 -41 1463 189 11 4 chr9 140615588 140615852 -1655592 + AluJb SINE Alu 43 308 -4 184 289 92 13 chr9 140616065 140616141 -1655303 - L2 LINE L2 -41 3231 3150 1536 209 10 0 chr9 140616239 140616535 -1654909 + AluJb SINE Alu 14 312 0 281 252 29 19 chr9 140621071 140621174 -1650270 - L1ME2 LINE L1 -9 6155 6052 802 299 167 31 chr9 140621743 140622265 -1649179 - MLT1E LTR MaLR 0 593 1 510 236 20 27 chr9 140622522 140622670 -1648774 - MLT1H LTR MaLR -5 544 398 274 231 209 0 chr9 140622800 140622891 -1648553 - MLT1H1 LTR MaLR -411 144 35 590 85 43 0 chr9 140623224 140623318 -1648126 + AluSg/x SINE Alu 215 312 0 21 0 0 0 chr9 140625709 140625730 -1645714 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 140826878 140826906 -1444538 + GC_rich Low_complexity Low_complexity 1 28 0 207 291 151 0 chr9 140827826 140827912 -1443532 - L2 LINE L2 -38 3234 3136 206 272 13 146 chr9 140829752 140829910 -1441534 - MER5B DNA MER1_type -34 144 8 211 283 43 33 chr9 140829990 140830082 -1441362 - MIR SINE MIR -93 169 77 449 325 6 19 chr9 140832457 140832614 -1438830 + CT-rich Low_complexity Low_complexity 4 158 0 2081 121 7 0 chr9 140833825 140834122 -1437322 - AluSx SINE Alu -13 299 1 952 266 108 14 chr9 140835332 140835757 -1435687 + MLT1C LTR MaLR 2 466 -1 2343 99 0 0 chr9 140836688 140837000 -1434444 - AluSq SINE Alu -1 312 1 819 124 0 8 chr9 140838463 140838584 -1432860 - FLAM_A SINE Alu -7 135 16 2305 97 0 0 chr9 140838627 140838937 -1432507 + AluSx SINE Alu 2 311 -1 2358 103 0 0 chr9 140839042 140839353 -1432091 - AluY SINE Alu 0 311 1 880 165 120 29 chr9 140839395 140839700 -1431744 + MSTA LTR MaLR 1 428 0 10194 125 14 45 chr9 140839701 140841018 -1430426 + MSTA-int LTR MaLR 3 1261 -319 1869 103 0 0 chr9 140841018 140841261 -1430183 + AluSq SINE Alu 57 299 -14 10194 125 14 45 chr9 140841261 140841572 -1429872 + MSTA-int LTR MaLR 1261 1580 0 951 122 85 49 chr9 140841572 140841851 -1429593 + MSTA LTR MaLR 1 390 -38 2118 116 0 0 chr9 140841851 140842143 -1429301 - AluSg SINE Alu -18 292 1 951 122 85 49 chr9 140842143 140842184 -1429260 + MSTA LTR MaLR 390 428 0 213 387 71 9 chr9 140843375 140843600 -1427844 + MIR SINE MIR 3 241 -21 256 305 23 8 chr9 140843751 140843882 -1427562 + MLT1K LTR MaLR 345 477 -111 181 222 100 44 chr9 140843974 140844064 -1427380 - MIR SINE MIR -79 129 35 395 395 55 0 chr9 140846332 140846588 -1424856 + L1ME4a LINE L1 5602 5871 -250 1079 75 0 0 chr9 140848416 140848549 -1422895 - AluSq/x SINE Alu -180 133 1 2121 102 0 3 chr9 140848550 140848853 -1422591 - AluSx SINE Alu 0 302 1 33 0 0 0 chr9 140848853 140848886 -1422558 + AT_rich Low_complexity Low_complexity 1 33 0 2124 92 10 3 chr9 140848886 140849179 -1422265 - AluSx SINE Alu -15 297 3 724 215 16 21 chr9 140849180 140849299 -1422145 - L1M3 LINE L1 -563 5608 5489 2367 72 7 0 chr9 140849299 140849591 -1421853 - AluSq SINE Alu -19 294 1 724 215 16 21 chr9 140849591 140849657 -1421787 - L1M3 LINE L1 -682 5489 5424 * 1920 294 56 31 chr9 140849646 140849751 -1421693 - L1MEc LINE L1 -5417 979 878 851 134 8 15 chr9 140849751 140849885 -1421559 - FLAM_C SINE Alu 0 133 1 1920 294 56 31 chr9 140849885 140850702 -1420742 - L1MEc LINE L1 -5518 878 34 1830 140 37 3 chr9 140851305 140851605 -1419839 - AluJo SINE Alu -2 310 1 2238 95 0 3 chr9 140851707 140852011 -1419433 - AluY SINE Alu -8 303 1 593 263 103 35 chr9 140852011 140852350 -1419094 - HAL1 LINE L1 -124 2383 2022 282 275 77 8 chr9 140852350 140852568 -1418876 - MLT1J LTR MaLR -4 507 217 2178 123 7 0 chr9 140852568 140852877 -1418567 + AluSq SINE Alu 1 311 -2 464 250 27 20 chr9 140853231 140853379 -1418065 - MLT1J LTR MaLR -291 220 72 377 290 19 98 chr9 140853452 140853666 -1417778 - HAL1 LINE L1 -518 1989 1793 263 282 43 69 chr9 140855786 140855940 -1415504 + MIR SINE MIR 18 166 -60 2197 110 0 0 chr9 140857831 140858132 -1413312 + AluSx SINE Alu 1 301 -11 383 113 0 0 chr9 140858133 140858195 -1413249 - L1MB8 LINE L1 -9 6169 6108 2208 85 0 0 chr9 140858195 140858499 -1412945 + AluSg SINE Alu 3 306 0 199 0 0 0 chr9 140858477 140858512 -1412932 + (TAAAA)n Simple_repeat Simple_repeat 3 37 -330 2203 120 3 0 chr9 140858512 140858821 -1412623 + AluSp SINE Alu 4 313 0 199 0 0 0 chr9 140858821 140858842 -1412602 + (TAAAA)n Simple_repeat Simple_repeat 36 367 0 2053 115 10 0 chr9 140859446 140859734 -1411710 - AluSx SINE Alu -21 291 1 2236 115 0 0 chr9 140859837 140860149 -1411295 - AluSx SINE Alu 0 312 1 1573 218 77 119 chr9 140860151 140860632 -1410812 - L1MA8 LINE L1 0 6291 5851 2091 97 3 17 chr9 140860632 140860930 -1410514 + AluSx SINE Alu 1 294 -18 1573 218 77 119 chr9 140860930 140861197 -1410247 - L1MA8 LINE L1 -440 5851 5574 647 317 33 0 chr9 140861198 140861438 -1410006 - L1MB4 LINE L1 -36 6144 5897 2453 75 0 0 chr9 140861469 140861775 -1409669 - AluSx SINE Alu -6 306 1 2251 95 0 0 chr9 140861784 140862078 -1409366 - AluSx SINE Alu -18 294 1 779 141 0 83 chr9 140862088 140862244 -1409200 - FLAM_C SINE Alu 0 143 1 489 283 90 14 chr9 140862248 140862471 -1408973 - L1MB4 LINE L1 -347 5827 5588 21 0 0 0 chr9 140862495 140862516 -1408928 + AT_rich Low_complexity Low_complexity 1 21 0 1079 138 0 0 chr9 140862570 140862730 -1408714 + AluSg/x SINE Alu 134 293 -16 2275 75 0 0 chr9 140862732 140863013 -1408431 + AluY SINE Alu 1 281 -30 234 0 0 0 chr9 140863015 140863041 -1408403 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2047 118 31 0 chr9 140863125 140863413 -1408031 + AluSx SINE Alu 1 297 -15 255 263 42 32 chr9 140863530 140863625 -1407819 + L1ME1 LINE L1 6033 6128 -38 705 267 101 4 chr9 140863637 140863914 -1407530 + L1MC1 LINE L1 6026 6329 -4 22 0 0 0 chr9 140863914 140863936 -1407508 + AT_rich Low_complexity Low_complexity 1 22 0 2501 53 0 0 chr9 140864689 140864993 -1406451 + AluY SINE Alu 1 304 -7 198 143 0 0 chr9 140865061 140865096 -1406348 + (CAT)n Simple_repeat Simple_repeat 1 35 0 332 274 24 0 chr9 140866035 140866119 -1405325 + MIR3 SINE MIR 90 175 -33 288 261 90 8 chr9 140866885 140867021 -1404423 + MIR3 SINE MIR 31 171 -51 434 229 8 25 chr9 140868297 140868419 -1403025 + L1ME LINE L1 5428 5547 -623 288 224 50 18 chr9 140871046 140871181 -1400263 + MIR3 SINE MIR 20 158 -50 245 281 0 0 chr9 140875241 140875298 -1396146 - MIR SINE MIR -62 146 90 271 36 0 91 chr9 140875944 140875999 -1395445 + (CGGGG)n Simple_repeat Simple_repeat 5 54 0 22 88 0 0 chr9 140876000 140876057 -1395387 + GC_rich Low_complexity Low_complexity 1 57 0 239 191 202 24 chr9 140877260 140877344 -1394100 - MIR3 SINE MIR -19 189 91 249 270 48 0 chr9 140884627 140884690 -1386754 + MIR SINE MIR 106 171 -91 270 241 64 0 chr9 140885454 140885595 -1385849 + (CAGG)n Simple_repeat Simple_repeat 3 152 0 183 139 0 0 chr9 140887273 140887309 -1384135 + (GA)n Simple_repeat Simple_repeat 1 36 0 1287 165 33 4 chr9 140888944 140889186 -1382258 - AluJb SINE Alu -63 249 1 539 265 58 0 chr9 140889196 140889385 -1382059 - L1MB3 LINE L1 -7 6176 5977 2399 82 0 0 chr9 140890353 140890659 -1380785 - AluSx SINE Alu -6 306 1 580 219 15 0 chr9 140890660 140890797 -1380647 + L1MD3 LINE L1 7843 7981 -14 2089 102 17 0 chr9 140890803 140891097 -1380347 - AluSg SINE Alu -11 299 1 330 319 17 0 chr9 140891105 140891224 -1380220 - L1MB3 LINE L1 -3 6180 6060 292 326 163 0 chr9 140891900 140892207 -1379237 + L1MB5 LINE L1 5818 6174 0 585 243 0 0 chr9 140893212 140893441 -1378003 + (TG)n Simple_repeat Simple_repeat 1 229 0 1625 105 0 0 chr9 140893544 140893772 -1377672 + AluSg/x SINE Alu 83 310 0 321 270 90 0 chr9 140893781 140893892 -1377552 - MLT1D LTR MaLR -384 121 1 261 182 0 0 chr9 140893959 140894014 -1377430 + (TG)n Simple_repeat Simple_repeat 2 56 0 2291 99 0 3 chr9 140894064 140894366 -1377078 - AluSq SINE Alu -12 301 1 437 260 109 16 chr9 140894398 140894590 -1376854 + MLT1A2 LTR MaLR 7 216 -158 857 181 6 0 chr9 140895243 140895403 -1376041 + LTR43 LTR ERV1 1 161 -441 1157 121 0 0 chr9 140895403 140895569 -1375875 - AluSg/x SINE Alu -13 299 134 1911 130 7 7 chr9 140895569 140895868 -1375576 - AluSx SINE Alu -13 299 1 1198 187 71 54 chr9 140895868 140896165 -1375279 + L1MB5 LINE L1 5816 6121 -53 2195 118 0 0 chr9 140896165 140896461 -1374983 - AluSx SINE Alu -16 296 1 1198 187 71 54 chr9 140896461 140896516 -1374928 + L1MB5 LINE L1 6121 6174 0 2068 101 4 0 chr9 140896527 140896805 -1374639 + AluSx SINE Alu 1 279 -33 2019 88 0 21 chr9 140897058 140897341 -1374103 - AluSp SINE Alu -20 293 17 1433 6 0 0 chr9 140897504 140897661 -1373783 - SVA Other Other 0 1386 1230 2258 95 3 0 chr9 140897959 140898255 -1373189 + AluSx SINE Alu 2 298 -14 362 328 35 5 chr9 140898255 140898453 -1372991 - L1ME LINE L1 -311 5810 5607 183 372 78 22 chr9 140898660 140898891 -1372553 + L2 LINE L2 2849 3092 -180 270 160 0 0 chr9 140899090 140899140 -1372304 + (CA)n Simple_repeat Simple_repeat 2 51 0 1131 141 6 1 chr9 140899497 140900361 -1371083 + (CTCA)n Simple_repeat Simple_repeat 1 868 0 238 270 14 27 chr9 140900392 140900466 -1370978 - L2 LINE L2 0 3272 3200 232 234 192 60 chr9 140901806 140901973 -1369471 + MLT1C LTR MaLR 6 194 -273 419 254 35 8 chr9 140902047 140902176 -1369268 + MLT1C LTR MaLR 331 495 -10 314 305 57 21 chr9 140902761 140902902 -1368542 - MIR3 SINE MIR -62 146 1 198 171 0 0 chr9 140904462 140904503 -1366941 + (TG)n Simple_repeat Simple_repeat 1 41 0 330 339 6 27 chr9 140904538 140904780 -1366664 + (TG)n Simple_repeat Simple_repeat 1 236 0 263 267 40 0 chr9 140905532 140905607 -1365837 + MIR SINE MIR 117 194 -68 186 43 0 0 chr9 140905915 140905938 -1365506 + (CGGGGG)n Simple_repeat Simple_repeat 2 24 0 746 342 61 26 chr9 140908619 140909347 -1362097 + HERVL LTR ERVL 1724 2518 -2621 791 184 7 0 chr9 140909850 140909986 -1361458 + AluJb SINE Alu 156 292 -20 354 303 65 13 chr9 140910009 140910202 -1361242 + HERVL LTR ERVL 2946 3155 -1905 1070 247 76 21 chr9 140910289 140910670 -1360774 + MLT1C LTR MaLR 51 452 -15 210 272 99 25 chr9 140911577 140911658 -1359786 + L2 LINE L2 3183 3269 -3 1574 216 66 11 chr9 140911747 140912287 -1359157 + L1MB3 LINE L1 5109 5688 -492 1230 243 27 0 chr9 140912481 140912818 -1358626 + L1MB3 LINE L1 5657 6002 -181 585 220 42 0 chr9 140912919 140913087 -1358357 + L1MB3 LINE L1 6008 6182 -1 560 137 8 24 chr9 140913092 140913216 -1358228 + GA-rich Low_complexity Low_complexity 3 124 0 210 235 39 0 chr9 140913715 140913766 -1357678 + MIR SINE MIR 118 170 -92 189 0 0 0 chr9 140914309 140914330 -1357114 + (T)n Simple_repeat Simple_repeat 1 21 0 253 162 117 32 chr9 140916702 140916856 -1354588 + (CAGGG)n Simple_repeat Simple_repeat 3 169 0 348 207 73 0 chr9 140920556 140920638 -1350806 + U3 snRNA snRNA 2 89 -128 281 328 33 98 chr9 140921160 140921404 -1350040 - MIR SINE MIR -20 242 15 1575 137 4 16 chr9 140923674 140923922 -1347522 - AluJb SINE Alu -67 245 1 184 235 20 20 chr9 140923922 140923966 -1347478 - L2 LINE L2 -5 3308 3262 320 253 127 32 chr9 140924487 140924645 -1346799 + L2 LINE L2 2878 3050 -222 946 254 63 5 chr9 140926111 140926426 -1345018 + L1MB5 LINE L1 5815 6150 -30 1365 152 0 0 chr9 140926426 140926636 -1344808 + AluJo SINE Alu 86 295 -17 1849 153 45 0 chr9 140926638 140926925 -1344519 + AluSx SINE Alu 1 300 -12 200 188 116 14 chr9 140927234 140927303 -1344141 - MIR SINE MIR -70 138 63 1934 103 0 4 chr9 140928208 140928471 -1342973 - AluSx SINE Alu -4 308 47 211 252 138 16 chr9 140928622 140928745 -1342699 + MIR3 SINE MIR 3 140 -68 192 237 113 41 chr9 140928831 140928928 -1342516 + MIR SINE MIR 34 137 -71 332 315 28 42 chr9 140929014 140929157 -1342287 + L2 LINE L2 3127 3267 -5 252 241 135 64 chr9 140929404 140929545 -1341899 - MIR SINE MIR -70 192 42 212 346 38 23 chr9 140930214 140930347 -1341097 - MIR SINE MIR -106 156 22 207 69 0 0 chr9 140931365 140931394 -1340050 + (A)n Simple_repeat Simple_repeat 1 29 0 24 91 0 0 chr9 140933997 140934063 -1337381 + GC_rich Low_complexity Low_complexity 1 66 0 942 134 7 7 chr9 140934248 140934397 -1337047 - AluY SINE Alu -162 149 1 2313 87 0 26 chr9 140934399 140934708 -1336736 - AluSg SINE Alu -9 301 1 589 292 81 26 chr9 140934710 140934747 -1336697 + L1M4 LINE L1 3827 3861 -2285 1756 193 80 35 chr9 140934747 140935120 -1336324 - MER65A LTR ERV1 0 445 90 180 0 0 0 chr9 140935120 140935140 -1336304 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2159 104 0 0 chr9 140935140 140935437 -1336007 - AluSq SINE Alu -16 297 1 1756 193 80 35 chr9 140935437 140935488 -1335956 - MER65A LTR ERV1 -354 91 1 589 292 81 26 chr9 140935488 140935796 -1335648 + L1M4 LINE L1 3861 4191 -1955 562 109 254 27 chr9 140935807 140935917 -1335527 + AluJo SINE Alu 1 135 -177 1689 184 26 19 chr9 140935917 140936227 -1335217 + AluJb SINE Alu 1 312 0 649 255 55 29 chr9 140936227 140936537 -1334907 + L1M4 LINE L1 4946 5263 -883 2009 134 7 0 chr9 140936538 140936836 -1334608 + AluSq SINE Alu 1 300 -13 267 152 10 152 chr9 140936839 140936872 -1334572 + L1P5 LINE L1 5361 5397 -754 2230 115 0 6 chr9 140936872 140937186 -1334258 + AluSx SINE Alu 1 312 0 267 152 10 152 chr9 140937186 140937251 -1334193 + L1P5 LINE L1 5397 5445 -706 1514 89 114 0 chr9 140937263 140937499 -1333945 + AluSc SINE Alu 40 302 -7 303 277 0 12 chr9 140937519 140937602 -1333842 + L1MC2 LINE L1 6171 6252 -92 2020 120 3 0 chr9 140938240 140938532 -1332912 + AluSx SINE Alu 5 297 -15 553 283 16 38 chr9 140938646 140938830 -1332614 - MIR SINE MIR -22 240 61 209 300 88 0 chr9 140939586 140939666 -1331778 + MIR SINE MIR 27 113 -149 929 143 0 0 chr9 140939817 140939950 -1331494 + FLAM_C SINE Alu 1 133 0 235 226 69 49 chr9 140940886 140940988 -1330456 + MLT1J LTR MaLR 393 496 -15 379 281 16 31 chr9 140941402 140941530 -1329914 + MIR SINE MIR 20 145 -117 21 36 0 0 chr9 140943858 140943886 -1327558 + GC_rich Low_complexity Low_complexity 1 28 0 192 97 0 0 chr9 140944012 140944043 -1327401 + (CAG)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr9 140944072 140944101 -1327343 + GC_rich Low_complexity Low_complexity 1 29 0 195 69 0 0 chr9 140944163 140944192 -1327252 + (CGGGG)n Simple_repeat Simple_repeat 4 32 0 283 250 20 34 chr9 140944230 140944378 -1327066 + (CCCCG)n Simple_repeat Simple_repeat 4 149 0 329 299 90 40 chr9 140945757 140945958 -1325486 + L2 LINE L2 3047 3257 -15 206 204 97 0 chr9 140945975 140946044 -1325400 - MIR SINE MIR -62 146 65 2334 101 0 0 chr9 140946407 140946713 -1324731 - AluSx SINE Alu -6 306 1 219 301 73 49 chr9 140947125 140947248 -1324196 + MIR SINE MIR 25 150 -58 204 212 58 5 chr9 140948371 140948442 -1323002 + MIR SINE MIR 81 129 -79 1317 210 84 11 chr9 140949801 140950148 -1321296 + MER51B LTR ERV1 1 372 -5 274 238 16 0 chr9 140950398 140950461 -1320983 + MER91 DNA MER1_type 3 66 -74 906 180 16 41 chr9 140950812 140951006 -1320438 + MER53 DNA DNA 1 189 0 201 74 0 0 chr9 140951106 140951133 -1320311 + (GGGTG)n Simple_repeat Simple_repeat 5 31 0 225 0 0 0 chr9 140951590 140951615 -1319829 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 472 202 11 0 chr9 140951736 140951830 -1319614 + ORSL DNA AcHobo 24 118 -157 2147 114 3 0 chr9 140951856 140952154 -1319290 + AluSg SINE Alu 1 299 -11 274 271 29 36 chr9 140953656 140953781 -1317663 - L1M4 LINE L1 -2322 3824 3699 2134 127 7 0 chr9 140953781 140954089 -1317355 - AluSx SINE Alu -2 310 1 274 271 29 36 chr9 140954089 140954103 -1317341 - L1M4 LINE L1 -2447 3699 3686 901 292 85 3 chr9 140954124 140954477 -1316967 - L1M4 LINE L1 -2414 3732 3351 677 355 36 12 chr9 140955678 140955929 -1315515 - L1M4 LINE L1 -2806 3340 3084 629 199 6 0 chr9 140956289 140956450 -1314994 + (TG)n Simple_repeat Simple_repeat 1 162 0 233 307 0 27 chr9 140956452 140956527 -1314917 + (CGTG)n Simple_repeat Simple_repeat 4 76 0 309 291 0 0 chr9 140956529 140956694 -1314750 + (TG)n Simple_repeat Simple_repeat 1 165 0 447 304 0 6 chr9 140956706 140957063 -1314381 + (TG)n Simple_repeat Simple_repeat 1 354 0 287 209 15 45 chr9 140959056 140959123 -1312321 - MIR3 SINE MIR -32 176 112 924 217 93 35 chr9 140959517 140959775 -1311669 - ORSL DNA AcHobo -2 273 1 297 141 42 0 chr9 140961098 140961169 -1310275 + C-rich Low_complexity Low_complexity 6 79 0 190 287 167 19 chr9 140964803 140964911 -1306533 - MIR SINE MIR -111 151 28 192 77 0 0 chr9 140968481 140968507 -1302937 + (TCC)n Simple_repeat Simple_repeat 3 28 0 199 288 150 0 chr9 140968599 140968679 -1302765 + L2 LINE L2 3208 3299 -14 266 346 98 26 chr9 140971947 140972100 -1299344 - MIR SINE MIR -12 250 87 919 229 146 6 chr9 140972244 140972567 -1298877 + MLT1B LTR MaLR 23 390 0 237 216 0 0 chr9 140973708 140973759 -1297685 + (CAGCC)n Simple_repeat Simple_repeat 3 53 0 1983 78 12 0 chr9 140974280 140974537 -1296907 - AluSx SINE Alu -26 286 27 2259 70 0 0 chr9 140974541 140974846 -1296598 - AluY SINE Alu 0 305 1 1688 195 13 27 chr9 140974846 140975220 -1296224 - Tigger2a DNA MER2_type -60 374 6 559 320 153 25 chr9 140975225 140975323 -1296121 - L1MB8 LINE L1 -24 6154 6070 2254 82 0 20 chr9 140975323 140975628 -1295816 - AluSx SINE Alu -13 299 1 559 320 153 25 chr9 140975628 140976086 -1295358 - L1MB8 LINE L1 -108 6070 5527 183 203 85 0 chr9 140976230 140976289 -1295155 - MIR SINE MIR -91 171 108 276 213 11 11 chr9 140976749 140976843 -1294601 + (TG)n Simple_repeat Simple_repeat 2 95 0 201 108 0 0 chr9 140978061 140978098 -1293346 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 189 269 32 75 chr9 140978756 140978849 -1292595 - MIR SINE MIR -119 143 55 * 319 213 0 0 chr9 140978826 140978887 -1292557 - MER91 DNA MER1_type -78 62 2 467 307 76 62 chr9 140979957 140980158 -1291286 - L1MC/D LINE L1 -750 5396 5199 2073 122 3 0 chr9 140980158 140980461 -1290983 + AluSx SINE Alu 1 304 -8 467 307 76 62 chr9 140980461 140980731 -1290713 - L1MC/D LINE L1 -947 5199 5131 1732 161 7 30 chr9 140980731 140981035 -1290409 - AluJb SINE Alu -15 297 1 467 307 76 62 chr9 140981035 140981422 -1290022 - L1MC/D LINE L1 -1015 5131 4751 2265 79 3 19 chr9 140981425 140981740 -1289704 - AluSq SINE Alu -3 310 1 2175 96 0 0 chr9 140981822 140982140 -1289304 - AluSx SINE Alu 0 318 1 313 327 19 0 chr9 140982220 140982324 -1289120 - MIR3 SINE MIR -32 176 71 528 237 0 87 chr9 140983603 140983671 -1287773 + MLT1D LTR MaLR 12 84 -421 2076 97 0 10 chr9 140983671 140983989 -1287455 - AluSx SINE Alu 0 315 1 528 237 0 87 chr9 140983989 140984138 -1287306 + MLT1D LTR MaLR 84 211 -294 203 261 43 72 chr9 140984214 140984283 -1287161 + L2 LINE L2 3196 3262 -51 2605 42 0 3 chr9 140984452 140984761 -1286683 + AluY SINE Alu 1 308 -3 870 125 0 0 chr9 140986436 140986580 -1284864 + (CTCA)n Simple_repeat Simple_repeat 4 147 0 1532 182 148 29 chr9 140986685 140987163 -1284281 - MER54B LTR ERVL -258 535 1 238 135 36 130 chr9 140988092 140988284 -1283160 + (CCCCAG)n Simple_repeat Simple_repeat 5 178 0 198 0 0 0 chr9 140988435 140988457 -1282987 + (CTGGGG)n Simple_repeat Simple_repeat 5 26 0 2342 87 0 0 chr9 140990956 140991254 -1280190 - AluSx SINE Alu -14 298 1 902 105 15 0 chr9 140991501 140991634 -1279810 + AluJo SINE Alu 1 135 -177 2092 125 7 0 chr9 140991634 140991938 -1279506 + AluJb SINE Alu 1 306 -6 838 293 87 12 chr9 140991956 140992383 -1279061 + L1MB2 LINE L1 5711 6169 -2 2212 88 7 0 chr9 140992387 140992683 -1278761 + AluSp SINE Alu 1 298 -15 769 214 69 0 chr9 140993851 140994010 -1277434 - AluJo SINE Alu -7 305 136 22 80 0 0 chr9 140995219 140995269 -1276175 + GC_rich Low_complexity Low_complexity 1 50 0 230 267 17 0 chr9 140995574 140995634 -1275810 - L1MC/D LINE L1 -2347 5695 5635 348 297 135 13 chr9 140995712 140995941 -1275503 - L1MC/D LINE L1 -645 5521 5265 1197 159 0 56 chr9 140995997 140996230 -1275214 - AluJo SINE Alu -92 220 1 437 170 9 9 chr9 140996232 140996338 -1275106 - L1MC/D LINE L1 -865 5281 5176 2131 89 36 0 chr9 140996340 140996642 -1274802 - AluSq SINE Alu 0 313 1 849 161 0 27 chr9 140996642 140996791 -1274653 - AluJo SINE Alu -167 145 1 776 207 12 117 chr9 140996808 140997064 -1274380 - L1MC/D LINE L1 -1042 5104 4876 462 305 6 23 chr9 140998357 140998526 -1272918 - HERVL40 LTR ERVL -883 4647 4480 2358 66 0 0 chr9 140998526 140998815 -1272629 - AluY SINE Alu -22 289 1 987 137 6 6 chr9 140998840 140999008 -1272436 - MER9 LTR ERVK 0 511 344 3741 316 40 37 chr9 140999028 140999614 -1271830 - HERVL40 LTR ERVL -2507 3023 2440 2140 129 0 0 chr9 140999614 140999924 -1271520 - AluSx SINE Alu -2 310 1 3741 316 40 37 chr9 140999924 141000601 -1270843 - HERVL40 LTR ERVL -3090 2440 1766 2065 125 0 16 chr9 141000601 141000912 -1270532 - AluSq SINE Alu -7 306 1 2005 110 0 49 chr9 141000912 141001220 -1270224 - AluSx SINE Alu -19 293 1 3741 316 40 37 chr9 141001220 141001699 -1269745 - HERVL40 LTR ERVL -3763 1767 1274 428 329 38 8 chr9 141002040 141002207 -1269237 - MER57A LTR ERV1 -13 390 212 2372 89 0 3 chr9 141002207 141002520 -1268924 + AluSx SINE Alu 1 312 0 428 329 38 8 chr9 141002520 141002592 -1268852 - MER57A LTR ERV1 -191 212 144 1987 114 0 0 chr9 141002726 141002999 -1268445 + AluSq SINE Alu 1 273 -40 227 266 11 64 chr9 141053546 141053734 -1217710 + G-rich Low_complexity Low_complexity 3 180 0 * 260 257 11 63 chr9 141053604 141053779 -1217665 + (CGGGG)n Simple_repeat Simple_repeat 2 167 0 362 324 6 35 chr9 141053854 141054024 -1217420 + G-rich Low_complexity Low_complexity 3 167 0 2275 82 0 3 chr9 141054771 141055063 -1216381 + AluSg SINE Alu 1 291 -19 648 132 0 38 chr9 141055312 141055418 -1216026 + FLAM_A SINE Alu 30 131 -11 801 160 0 0 chr9 141055535 141055660 -1215784 - FLAM_C SINE Alu -13 130 6 2197 105 0 3 chr9 141059148 141059452 -1211992 - AluSq SINE Alu -10 303 1 22 0 0 0 chr9 141060918 141060940 -1210504 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr9 141061551 141061573 -1209871 + (AGGGGG)n Simple_repeat Simple_repeat 2 23 0 26 0 0 0 chr9 141064662 141064688 -1206756 + GC_rich Low_complexity Low_complexity 1 26 0 299 271 24 0 chr9 141066623 141066708 -1204736 - MER81 DNA DNA -1 113 27 231 357 84 0 chr9 141067918 141068061 -1203383 + MIR SINE MIR 49 203 -59 191 101 38 51 chr9 141069982 141070061 -1201383 + (CCCCG)n Simple_repeat Simple_repeat 5 82 0 24 0 0 0 chr9 141071006 141071030 -1200414 + GC_rich Low_complexity Low_complexity 1 24 0 222 235 0 49 chr9 141072238 141072340 -1199104 + (CCGGG)n Simple_repeat Simple_repeat 3 99 0 30 27 0 0 chr9 141072683 141072720 -1198724 + GC_rich Low_complexity Low_complexity 1 37 0 35 88 0 0 chr9 141073338 141073429 -1198015 + GC_rich Low_complexity Low_complexity 1 91 0 30 93 0 0 chr9 141074707 141074793 -1196651 + GC_rich Low_complexity Low_complexity 1 86 0 28 61 0 0 chr9 141074920 141074969 -1196475 + GC_rich Low_complexity Low_complexity 1 49 0 192 77 0 0 chr9 141077110 141077136 -1194308 + (CCTTG)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr9 141079370 141079396 -1192048 + GC_rich Low_complexity Low_complexity 1 26 0 215 270 0 27 chr9 141079467 141079541 -1191903 + CT-rich Low_complexity Low_complexity 2 73 0 192 77 0 0 chr9 141079658 141079684 -1191760 + (TTC)n Simple_repeat Simple_repeat 2 27 0 2244 84 0 7 chr9 141082686 141082982 -1188462 + AluY SINE Alu 1 294 -17 945 205 37 9 chr9 141084657 141084872 -1186572 - AluJo SINE Alu -91 221 1 230 333 19 0 chr9 141085232 141085340 -1186104 + L1MC5 LINE L1 7677 7786 -175 842 190 13 0 chr9 141086696 141086854 -1184590 + FRAM SINE Alu 9 168 -8 395 293 57 0 chr9 141089298 141089438 -1182006 + MER68 LTR ERV1 338 485 -77 2228 84 7 3 chr9 141094659 141094956 -1176488 + AluSg1 SINE Alu 5 302 -7 216 122 0 0 chr9 141094959 141095000 -1176444 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 2378 61 0 0 chr9 141096177 141096470 -1174974 - AluY SINE Alu -11 300 8 297 326 29 7 chr9 141098093 141098231 -1173213 - HAL1b LINE L1 0 1348 1208 550 255 60 0 chr9 141098274 141098423 -1173021 - L1MC1 LINE L1 -440 5893 5736 397 279 205 0 chr9 141098426 141098587 -1172857 - HAL1 LINE L1 -1218 1289 1096 770 161 12 62 chr9 141098588 141098613 -1172831 - AluJo/FRAM SINE Alu -1 311 286 2178 81 14 0 chr9 141098613 141098908 -1172536 + AluSq SINE Alu 1 299 -14 770 161 12 62 chr9 141098908 141099044 -1172400 - AluJo/FRAM SINE Alu -26 286 158 2621 39 0 0 chr9 141099393 141099701 -1171743 - AluY SINE Alu -3 308 1 2077 139 7 10 chr9 141099970 141100280 -1171164 - AluSg SINE Alu -1 309 1 2457 68 0 0 chr9 141100345 141100653 -1170791 - AluY SINE Alu 0 311 4 2070 127 7 0 chr9 141100656 141100956 -1170488 - AluSx SINE Alu -10 302 1 2134 109 31 0 chr9 141101502 141101795 -1169649 + AluSg SINE Alu 1 302 -8 2292 79 0 3 chr9 141102072 141102362 -1169082 + AluY SINE Alu 6 294 -17 2314 102 3 0 chr9 141103399 141103704 -1167740 - AluSx SINE Alu -6 306 1 334 181 36 12 chr9 141103968 141104051 -1167393 + MER4B LTR ERV1 1 85 -525 664 198 8 0 chr9 141104151 141104272 -1167172 + AluJb SINE Alu 32 153 -159 2170 120 0 0 chr9 141104274 141104575 -1166869 - AluSx SINE Alu -10 302 2 1432 115 28 12 chr9 141104585 141104837 -1166607 + MER4E LTR ERV1 520 775 -4 2176 79 0 24 chr9 141105071 141105384 -1166060 + AluY SINE Alu 1 306 0 1084 61 0 0 chr9 141106286 141106417 -1165027 - AluSg SINE Alu -179 131 1 31 0 0 0 chr9 141107219 141107250 -1164194 + GC_rich Low_complexity Low_complexity 1 31 0 31 76 0 0 chr9 141107615 141107681 -1163763 + GC_rich Low_complexity Low_complexity 1 66 0 32 26 0 0 chr9 141107823 141107862 -1163582 + GC_rich Low_complexity Low_complexity 1 39 0 445 292 106 16 chr9 141108231 141108543 -1162901 + MER74B LTR ERVL 273 612 -10 704 171 0 0 chr9 141109780 141109885 -1161559 - AluJb SINE Alu -71 241 137 188 384 20 7 chr9 141111270 141111416 -1160028 + L2 LINE L2 1894 2041 -1273 288 275 25 0 chr9 141112154 141112234 -1159210 + L2 LINE L2 3203 3284 -29 489 271 112 37 chr9 141113378 141113592 -1157852 + MIR SINE MIR 3 232 -30 2142 97 7 13 chr9 141113645 141113953 -1157491 + AluSg SINE Alu 1 306 -4 2110 134 0 0 chr9 141114008 141114307 -1157137 - AluSx SINE Alu -11 301 3 2152 96 17 0 chr9 141117139 141117430 -1154014 + AluSx SINE Alu 1 296 -16 2309 90 0 3 chr9 141117430 141117740 -1153704 + AluSx SINE Alu 1 310 -2 1077 152 0 0 chr9 141117740 141117905 -1153539 + AluSg/x SINE Alu 126 290 -22 471 113 38 12 chr9 141117918 141117998 -1153446 - LTR5 LTR ERVK 0 969 888 2248 78 0 0 chr9 141117998 141118280 -1153164 + AluY SINE Alu 1 282 -29 3597 186 40 59 chr9 141118281 141119203 -1152241 - LTR5 LTR ERVK -64 905 1 1189 149 194 40 chr9 141120104 141120139 -1151305 - MLT1B LTR MaLR -4 386 358 2261 110 10 0 chr9 141120139 141120448 -1150996 + AluSx SINE Alu 1 312 0 1189 149 194 40 chr9 141120448 141120741 -1150703 - MLT1B LTR MaLR -32 358 7 387 273 118 43 chr9 141121113 141121300 -1150144 + MLT1J LTR MaLR 237 437 -74 2093 90 3 24 chr9 141121304 141121615 -1149829 + AluSq SINE Alu 1 305 0 1074 146 0 32 chr9 141121615 141121800 -1149644 + AluSg/x SINE Alu 132 310 0 231 224 0 0 chr9 141121800 141121849 -1149595 + MLT1J LTR MaLR 434 482 -29 2255 92 0 0 chr9 141125555 141125849 -1145595 + AluSg SINE Alu 1 294 -16 991 125 26 0 chr9 141125959 141126111 -1145333 + LTR5 LTR ERVK 1 156 -813 1650 156 17 36 chr9 141126313 141126614 -1144830 - AluJb SINE Alu -17 295 1 837 85 0 0 chr9 141126619 141126725 -1144719 - AluSg SINE Alu -182 128 23 1449 119 14 18 chr9 141127295 141127395 -1144049 - AluJb SINE Alu -78 234 135 2301 88 14 0 chr9 141127395 141127690 -1143754 - AluSp SINE Alu -14 299 1 1449 119 14 18 chr9 141127690 141127808 -1143636 - AluJb SINE Alu -177 135 17 2065 114 4 0 chr9 141129232 141129512 -1141932 - AluSx SINE Alu -31 281 1 2187 122 0 0 chr9 141129864 141130159 -1141285 - AluSx SINE Alu -17 295 1 2101 91 30 10 chr9 141130159 141130456 -1140988 - AluSc SINE Alu -6 303 1 304 102 0 0 chr9 141130807 141130856 -1140588 + Alu SINE Alu 249 297 -5 1627 175 0 18 chr9 141130856 141131136 -1140308 - AluJb SINE Alu -30 282 8 1939 66 0 0 chr9 141131827 141132068 -1139376 + AluSx SINE Alu 61 301 -11 311 269 39 0 chr9 141132068 141132172 -1139272 - L1MB5 LINE L1 -50 6124 6017 24 67 0 0 chr9 141132293 141132338 -1139106 + GC_rich Low_complexity Low_complexity 1 45 0 203 103 26 0 chr9 141132741 141132780 -1138664 + (CGG)n Simple_repeat Simple_repeat 3 42 0 285 179 0 0 chr9 141132827 141132911 -1138533 + G-rich Low_complexity Low_complexity 5 88 0 206 143 20 0 chr9 141132930 141132979 -1138465 + G-rich Low_complexity Low_complexity 4 53 0 202 293 49 0 chr9 141133546 141133628 -1137816 - L2 LINE L2 -833 2481 2396 210 284 138 0 chr9 141133790 141133906 -1137538 - L2 LINE L2 -1275 2039 1908 2276 83 7 3 chr9 141134151 141134452 -1136992 - AluSq SINE Alu -11 302 1 1074 37 15 0 chr9 141134582 141134718 -1136726 + AluY SINE Alu 152 289 -22 2039 68 19 0 chr9 141135169 141135432 -1136012 - AluY SINE Alu -35 276 9 270 47 0 0 chr9 141135499 141135542 -1135902 - AluY SINE Alu -4 296 254 2196 103 0 3 chr9 141135563 141135864 -1135580 - AluSp SINE Alu -13 300 1 749 186 0 0 chr9 141135904 141136033 -1135411 - FLAM_A SINE Alu 0 133 5 486 148 0 12 chr9 141137218 141137299 -1134145 - AluJb SINE Alu -80 232 153 1169 148 0 92 chr9 141137300 141137380 -1134064 - AluJb SINE Alu -115 197 111 2072 121 7 3 chr9 141137380 141137687 -1133757 - AluSg SINE Alu -2 308 1 1169 148 0 92 chr9 141137687 141137823 -1133621 - AluJb SINE Alu -201 111 1 2082 108 14 0 chr9 141138002 141138297 -1133147 - AluSp SINE Alu -14 299 1 2271 84 16 10 chr9 141138702 141139012 -1132432 - AluSx SINE Alu 0 312 1 639 83 46 9 chr9 141139012 141139120 -1132324 + MER41B LTR ERV1 512 623 -12 290 275 50 19 chr9 141139142 141139302 -1132142 - MER89 LTR ERV1 -219 340 176 1014 61 0 15 chr9 141139390 141139521 -1131923 + AluSp SINE Alu 5 133 -180 1862 96 82 24 chr9 141139525 141139817 -1131627 + AluSg SINE Alu 1 309 -1 966 223 66 82 chr9 141140197 141140385 -1131059 - MER87 LTR ERV1 -30 511 321 2087 95 3 20 chr9 141140385 141140679 -1130765 + AluSx SINE Alu 1 289 -23 966 223 66 82 chr9 141140679 141140691 -1130753 - MER87 LTR ERV1 -220 321 310 1980 128 27 0 chr9 141140691 141140988 -1130456 + AluJb SINE Alu 3 307 -5 966 223 66 82 chr9 141140988 141141213 -1130231 - MER87 LTR ERV1 -231 310 92 281 307 79 33 chr9 141141275 141141490 -1129954 + MLT1G LTR MaLR 102 326 -264 540 262 78 12 chr9 141141768 141142150 -1129294 + MLT1J LTR MaLR 78 509 -2 191 311 27 0 chr9 141142150 141142224 -1129220 - L2 LINE L2 -448 2866 2791 300 132 38 0 chr9 141142422 141142475 -1128969 + MSTB LTR MaLR 372 426 0 261 227 52 52 chr9 141142492 141142589 -1128855 + MLT1J2 LTR MaLR 354 450 0 208 281 62 31 chr9 141142730 141142826 -1128618 - L2 LINE L2 -24 3248 3150 334 318 58 6 chr9 141143415 141143588 -1127856 + L2 LINE L2 2702 2883 -431 392 277 126 78 chr9 141143665 141143704 -1127740 + L1ME LINE L1 5262 5298 -886 2148 131 0 0 chr9 141143704 141144009 -1127435 + AluSx SINE Alu 1 305 -7 2362 59 0 50 chr9 141144012 141144334 -1127110 + AluY SINE Alu 2 307 -4 392 277 126 78 chr9 141144334 141144388 -1127056 + L1ME LINE L1 5299 5349 -835 2169 109 0 3 chr9 141144388 141144681 -1126763 + AluSg SINE Alu 1 292 -18 392 277 126 78 chr9 141144681 141144878 -1126566 + L1ME LINE L1 5349 5558 -626 234 366 68 0 chr9 141144976 141145137 -1126307 + L1ME LINE L1 5650 5821 -349 236 234 32 43 chr9 141146308 141146402 -1125042 + MLT2B1 LTR ERVL 298 390 -130 2509 48 30 2 chr9 141147330 141147734 -1123710 - MER11A LTR ERVK -755 511 3 1108 115 0 6 chr9 141147734 141147891 -1123553 + AluSg/x SINE Alu 141 296 -13 4481 195 20 35 chr9 141148253 141149236 -1122208 - LTR5 LTR ERVK 0 969 1 1696 89 39 43 chr9 141149236 141149422 -1122022 - HERVK LTR ERVK 0 7243 7057 2249 92 0 10 chr9 141149422 141149727 -1121717 + AluY SINE Alu 1 302 -9 1696 89 39 43 chr9 141149727 141149820 -1121624 - HERVK LTR ERVK -186 7057 6965 11422 85 3 1 chr9 141149863 141151536 -1119908 - HERVK LTR ERVK -1710 5533 3857 339 250 40 0 chr9 141151641 141151741 -1119703 - MIR SINE MIR -137 125 22 198 279 116 12 chr9 141155619 141155705 -1115739 - MIR SINE MIR -91 171 77 1251 223 41 30 chr9 141156840 141157203 -1114241 - MLT1A2 LTR MaLR -7 367 1 431 262 98 90 chr9 141157268 141157910 -1113534 + L1M4 LINE L1 1060 1706 -4836 850 156 0 30 chr9 141157968 141158103 -1113341 + FLAM_C SINE Alu 3 133 0 824 121 151 18 chr9 141158112 141158278 -1113166 + MSTA LTR MaLR 1 188 -240 2344 103 0 0 chr9 141158378 141158688 -1112756 - AluSg SINE Alu 0 310 1 2337 87 0 0 chr9 141158692 141158990 -1112454 - AluSx SINE Alu -14 298 1 277 272 0 83 chr9 141159362 141159531 -1111913 + C-rich Low_complexity Low_complexity 2 156 0 1039 224 45 131 chr9 141160830 141161270 -1110174 + MLT1C LTR MaLR 2 395 -72 2267 100 0 0 chr9 141161270 141161570 -1109874 - AluSp SINE Alu -13 300 1 1039 224 45 131 chr9 141161570 141161634 -1109810 + MLT1C LTR MaLR 395 463 -4 256 266 89 0 chr9 141161634 141161758 -1109686 - L2 LINE L2 -223 3049 2915 213 326 30 61 chr9 141162379 141162511 -1108933 + MER91A DNA MER1_type 66 193 -3 2167 66 0 69 chr9 141162634 141162953 -1108491 + AluY SINE Alu 6 302 -9 247 230 52 44 chr9 141163224 141163359 -1108085 + (CGGGG)n Simple_repeat Simple_repeat 2 137 0 306 340 86 19 chr9 141164171 141164333 -1107111 + MIR SINE MIR 88 260 -2 253 149 194 0 chr9 141165416 141165483 -1105961 + MER51A LTR ERV1 1 80 -554 1764 91 6 76 chr9 141165527 141165571 -1105873 + MER51B LTR ERV1 71 117 -260 1960 108 7 7 chr9 141165571 141165857 -1105587 - AluSp SINE Alu -11 302 17 1764 91 6 76 chr9 141165857 141166141 -1105303 + MER51B LTR ERV1 117 376 -1 8110 70 10 1 chr9 141166308 141167306 -1104138 + LTR13 LTR ERVK 1 1007 0 453 274 46 51 chr9 141167306 141167418 -1104026 + L1MC/D LINE L1 5220 5331 -869 2067 115 3 34 chr9 141167418 141167741 -1103703 + AluSq SINE Alu 1 313 0 453 274 46 51 chr9 141167741 141167865 -1103579 + L1MC/D LINE L1 5331 5457 -743 10297 91 2 3 chr9 141168096 141169755 -1101689 + HERVK LTR ERVK 901 2563 -4680 1924 169 65 20 chr9 141169755 141170158 -1101286 + LTR13 LTR ERVK 1 421 -586 * 3001 179 35 36 chr9 141170156 141170905 -1100539 + LTR13 LTR ERVK 313 1007 0 6922 126 4 17 chr9 141170905 141172072 -1099372 + HERVK LTR ERVK 2558 3709 -3534 718 82 10 0 chr9 141172072 141172169 -1099275 + AluY SINE Alu 1 98 -213 320 276 215 65 chr9 141172569 141172862 -1098582 + HAL1 LINE L1 720 1056 -1451 863 227 6 0 chr9 141172866 141173042 -1098402 + AluSg/x SINE Alu 134 310 0 478 245 61 34 chr9 141173052 141173199 -1098245 + HAL1 LINE L1 1032 1182 -1325 2439 62 0 3 chr9 141173201 141173507 -1097937 + AluY SINE Alu 1 305 -6 229 253 69 0 chr9 141173596 141173617 -1097827 - MER112 DNA MER1_type -12 248 230 2084 125 14 0 chr9 141173617 141173914 -1097530 + AluSx SINE Alu 1 301 -11 229 253 69 0 chr9 141173914 141173979 -1097465 - MER112 DNA MER1_type -30 230 156 2218 109 0 0 chr9 141174763 141175067 -1096377 - AluSg SINE Alu -6 304 1 2172 111 0 3 chr9 141175067 141175364 -1096080 - AluSc SINE Alu -13 296 1 833 209 17 17 chr9 141175851 141176023 -1095421 + FAM SINE Alu 1 172 -3 1672 152 33 13 chr9 141176592 141176894 -1094550 + AluSx SINE Alu 1 308 -4 563 69 14 0 chr9 141177669 141177741 -1093703 - AluY SINE Alu -20 292 220 1439 58 0 0 chr9 141177741 141177912 -1093532 - AluY SINE Alu -125 186 16 289 295 53 0 chr9 141179514 141179609 -1091835 + MIR3 SINE MIR 109 208 0 498 236 128 0 chr9 141180050 141180253 -1091191 + Charlie5 DNA MER1_type 2374 2602 -10 987 125 0 0 chr9 141180762 141180898 -1090546 + AluJo SINE Alu 1 136 -176 1957 144 0 10 chr9 141180903 141181209 -1090235 + AluSx SINE Alu 1 303 -9 377 217 47 19 chr9 141181754 141181860 -1089584 + MIR SINE MIR 80 188 -74 920 191 37 19 chr9 141182341 141182556 -1088888 + L1MB3 LINE L1 5703 5921 -262 209 345 0 17 chr9 141183946 141184062 -1087382 + C-rich Low_complexity Low_complexity 2 115 0 240 211 40 13 chr9 141186098 141186174 -1085270 + (CCCCAG)n Simple_repeat Simple_repeat 3 80 0 249 319 0 0 chr9 141186630 141186702 -1084742 + (TG)n Simple_repeat Simple_repeat 1 72 0 356 59 0 172 chr9 141190842 141191046 -1080398 + (CCCCAG)n Simple_repeat Simple_repeat 3 171 0 290 64 0 196 chr9 141191151 141191371 -1080073 + (CCCCAG)n Simple_repeat Simple_repeat 1 177 0 1908 148 10 3 chr9 141192887 141193184 -1078260 + AluJo SINE Alu 8 306 -6 2252 72 0 23 chr9 141193305 141193645 -1077799 + AluSx SINE Alu 1 312 0 1118 241 168 42 chr9 141193647 141194170 -1077274 + L1MC4a LINE L1 5998 6586 -1222 635 164 6 38 chr9 141194188 141194371 -1077073 + GA-rich Low_complexity Low_complexity 2 178 0 752 287 124 15 chr9 141194375 141194713 -1076731 + L1MC4a LINE L1 6620 6994 -814 335 335 52 28 chr9 141194778 141195029 -1076415 - L1M4c LINE L1 -4593 1791 1535 1395 140 98 11 chr9 141195059 141195324 -1076120 - MSTA LTR MaLR 0 428 141 272 250 12 0 chr9 141196484 141196568 -1074876 + (ATG)n Simple_repeat Simple_repeat 3 87 0 1445 131 0 5 chr9 141196675 141196889 -1074555 - AluSg/x SINE Alu -16 294 82 249 189 0 0 chr9 141196988 141197041 -1074403 + G-rich Low_complexity Low_complexity 4 56 0 218 184 35 63 chr9 141197252 141197426 -1074018 + (GTGTG)n Simple_repeat Simple_repeat 2 170 0 2340 86 0 0 chr9 141201495 141201799 -1069645 - AluSx SINE Alu -8 304 1 262 294 47 0 chr9 141201861 141201946 -1069498 - MER20 DNA MER1_type -17 202 114 1642 101 31 27 chr9 141203447 141203705 -1067739 + AluSq SINE Alu 38 296 -17 2111 96 27 0 chr9 141206824 141207117 -1064327 + AluSx SINE Alu 1 301 -11 603 86 0 166 chr9 141207117 141207206 -1064238 + L1MB3 LINE L1 6056 6158 -25 2046 93 14 3 chr9 141207206 141207496 -1063948 + AluSp SINE Alu 1 293 -20 603 86 0 166 chr9 141207496 141207507 -1063937 + L1MB3 LINE L1 6158 6169 -14 1488 174 73 0 chr9 141207507 141207782 -1063662 + AluJo SINE Alu 1 295 -17 603 86 0 166 chr9 141207782 141207831 -1063613 + L1MB3 LINE L1 6169 6181 -2 1031 213 216 10 chr9 141207853 141208154 -1063290 - MLT1A1 LTR MaLR 0 365 3 1960 131 3 23 chr9 141208185 141208490 -1062954 + AluSx SINE Alu 3 301 -11 2307 88 0 19 chr9 141208502 141208820 -1062624 + AluSx SINE Alu 1 312 0 1815 154 10 7 chr9 141209572 141209878 -1061566 + AluJo SINE Alu 3 309 -3 319 283 110 5 chr9 141209938 141210129 -1061315 + MLT1C LTR MaLR 220 430 -37 8210 61 8 4 chr9 141210265 141211268 -1060176 - LTR13 LTR ERVK 0 1007 1 2218 98 0 13 chr9 141211718 141212023 -1059421 - AluSx SINE Alu -11 301 1 678 246 36 20 chr9 141262814 141263062 -1008382 - L1M4 LINE L1 -3260 2886 2635 5866 37 0 1 chr9 141263365 141264076 -1007368 - L1P LINE L1 -2333 3813 3104 25 65 0 0 chr9 141264618 141264664 -1006780 + AT_rich Low_complexity Low_complexity 1 46 0 5000 24 0 0 chr9 141264692 141265235 -1006209 - L1PA2 LINE L1 -2 6153 5611 294 54 0 0 chr9 141265341 141265378 -1006066 - AluSq/x SINE Alu -186 116 80 8379 54 14 7 chr9 141265378 141266378 -1005066 - LTR13 LTR ERVK 0 1007 1 872 199 0 0 chr9 141266378 141266527 -1004917 - AluJb SINE Alu -92 220 72 197 302 52 62 chr9 141266878 141266974 -1004470 + MIR SINE MIR 33 127 -81 1177 111 96 5 chr9 141267830 141268029 -1003415 + AluSg/x SINE Alu 95 311 -1 2198 125 3 0 chr9 141268029 141268340 -1003104 + AluSx SINE Alu 1 312 0 342 313 146 0 chr9 141268464 141268608 -1002836 - L1MC4 LINE L1 -522 7520 7356 1768 148 45 10 chr9 141268843 141269134 -1002310 - AluJo SINE Alu -11 301 1 239 109 22 0 chr9 141269326 141269372 -1002072 - L1MC4 LINE L1 -1178 6864 6818 1318 302 127 9 chr9 141269539 141270304 -1001140 - L1MC3 LINE L1 -46 7739 6885 2345 70 3 3 chr9 141270315 141270617 -1000827 - AluSp SINE Alu -11 302 1 499 280 42 0 chr9 141270896 141271064 -1000380 - L1ME1 LINE L1 -306 5860 5686 243 211 28 0 chr9 141271291 141271362 -1000082 + CT-rich Low_complexity Low_complexity 2 74 0 1723 160 4 7 chr9 141271732 141272007 -999437 + AluJo SINE Alu 28 301 -11 1877 106 0 0 chr9 141272030 141272275 -999169 + AluSq SINE Alu 1 245 -68 259 123 15 62 chr9 141272278 141272343 -999101 - AluS SINE Alu -227 76 15 252 0 0 0 chr9 141272367 141272395 -999049 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 310 143 0 33 chr9 141274486 141274557 -996887 - Alu SINE Alu -4 298 241 21 36 0 0 chr9 141275694 141275722 -995722 + GC_rich Low_complexity Low_complexity 1 28 0 1117 148 0 48 chr9 141276178 141276367 -995077 - AluSx SINE Alu -132 180 1 767 221 37 84 chr9 141276367 141276618 -994826 + MLT1B LTR MaLR 82 343 -47 2318 81 3 3 chr9 141276618 141276927 -994517 - AluY SINE Alu -1 310 2 1896 94 8 0 chr9 141276931 141277186 -994258 - AluSx SINE Alu -20 292 36 767 221 37 84 chr9 141277186 141277251 -994193 + MLT1B LTR MaLR 346 388 -2 959 90 0 0 chr9 141277708 141277841 -993603 - FRAM SINE Alu -1 175 43 233 284 0 0 chr9 141277949 141278016 -993428 + L1MC4 LINE L1 6694 6760 -1282 288 238 36 0 chr9 141278110 141278194 -993250 + L1MC4 LINE L1 6736 6822 -1220 292 137 42 168 chr9 141278194 141278250 -993194 + MLT1A2 LTR MaLR 1 42 -332 2211 98 10 0 chr9 141278250 141278557 -992887 + AluSp SINE Alu 1 310 -3 292 137 42 168 chr9 141278557 141278595 -992849 + MLT1A2 LTR MaLR 42 83 -291 1807 55 0 0 chr9 141278597 141278815 -992629 + AluY SINE Alu 1 218 -93 1935 108 42 14 chr9 141280864 141281150 -990294 + AluSx SINE Alu 6 299 -13 2524 70 46 8 chr9 141281928 141282316 -989128 + MLT2A1 LTR ERVL 1 403 -41 1810 111 25 7 chr9 141282316 141282596 -988848 - AluSx SINE Alu -13 299 15 387 0 0 0 chr9 141282729 141282772 -988672 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 300 284 0 43 chr9 141284319 141284435 -987009 + G-rich Low_complexity Low_complexity 2 112 0 1542 151 41 0 chr9 141286076 141286321 -985123 + AluJb SINE Alu 44 298 -14 212 201 43 36 chr9 141287512 141287651 -983793 + (CGCGG)n Simple_repeat Simple_repeat 3 142 0 23 0 0 0 chr9 141287657 141287680 -983764 + GC_rich Low_complexity Low_complexity 1 23 0 219 198 11 55 chr9 141287755 141287846 -983598 + (CGCGG)n Simple_repeat Simple_repeat 5 91 0 2072 71 0 0 chr9 141291040 141291295 -980149 + AluY SINE Alu 46 300 -11 226 48 0 48 chr9 141292538 141292580 -978864 + (GGCTG)n Simple_repeat Simple_repeat 4 43 0 221 262 0 71 chr9 141292901 141293027 -978417 + CT-rich Low_complexity Low_complexity 1 117 0 1873 139 20 0 chr9 141295673 141295967 -975477 + AluJb SINE Alu 3 302 -10 252 262 14 35 chr9 141296681 141296822 -974622 + (CCCCG)n Simple_repeat Simple_repeat 2 139 0 271 267 27 41 chr9 141296937 141297083 -974361 + C-rich Low_complexity Low_complexity 2 145 0 225 0 0 0 chr9 141297481 141297506 -973938 + (CTGGGG)n Simple_repeat Simple_repeat 4 28 0 181 93 0 47 chr9 141302172 141302215 -969229 + (CGGGG)n Simple_repeat Simple_repeat 1 41 0 275 169 56 0 chr9 141303457 141303546 -967898 + G-rich Low_complexity Low_complexity 2 95 0 296 284 17 34 chr9 141304853 141305029 -966415 + G-rich Low_complexity Low_complexity 3 175 0 222 292 120 26 chr9 141307301 141307493 -963951 - L2 LINE L2 -220 3052 2843 2236 110 0 0 chr9 141308140 141308440 -963004 + AluSx SINE Alu 2 301 -11 283 137 55 41 chr9 141308697 141308770 -962674 - AluS SINE Alu -1 301 228 250 204 0 0 chr9 141308949 141309005 -962439 + FLAM SINE Alu 81 127 -6 2020 79 79 7 chr9 141315107 141315387 -956057 + AluSx SINE Alu 1 300 -12 264 279 117 18 chr9 141315447 141315558 -955886 - L2 LINE L2 -18 3295 3174 337 295 108 29 chr9 141315790 141316031 -955413 + L2 LINE L2 2883 3142 -171 243 299 23 0 chr9 141316082 141316169 -955275 + MLT1D LTR MaLR 40 128 -465 359 279 115 27 chr9 141316249 141316432 -955012 + MLT1F1 LTR MaLR 369 567 0 490 228 60 54 chr9 141316433 141316582 -954862 + L2 LINE L2 3164 3313 0 236 289 119 19 chr9 141316719 141316878 -954566 - L2 LINE L2 -813 2501 2327 292 111 0 153 chr9 141316954 141317026 -954418 + Alu SINE Alu 242 302 0 644 232 118 67 chr9 141317047 141317226 -954218 + MLT1D LTR MaLR 116 284 -221 2308 190 104 34 chr9 141317226 141317753 -953691 - LTR6A LTR ERV1 0 564 1 1665 191 23 0 chr9 141317761 141318064 -953380 + AluJo SINE Alu 1 310 -2 644 232 118 67 chr9 141318064 141318190 -953254 + MLT1D LTR MaLR 290 446 -59 344 305 28 57 chr9 141318287 141318428 -953016 - L1MC3 LINE L1 -771 7014 6878 2313 81 3 25 chr9 141318429 141318749 -952695 - AluSp SINE Alu 0 313 1 405 275 0 0 chr9 141321156 141321323 -950121 + (TG)n Simple_repeat Simple_repeat 2 168 0 604 142 18 0 chr9 141321633 141321746 -949698 - MSTC LTR MaLR -1 427 313 465 204 50 94 chr9 141321757 141321898 -949546 - MSTC LTR MaLR -182 192 61 1911 133 10 0 chr9 141321898 141322191 -949253 + AluJb SINE Alu 1 296 -16 465 204 50 94 chr9 141322191 141322250 -949194 - MSTC LTR MaLR -313 61 1 430 228 32 24 chr9 141324050 141324173 -947271 - L1ME2 LINE L1 -169 5995 5872 1874 94 61 0 chr9 141326553 141326830 -944614 + AluSg SINE Alu 6 299 -11 2169 125 0 0 chr9 141326952 141327256 -944188 + AluSx SINE Alu 1 304 -8 2009 108 0 69 chr9 141327256 141327589 -943855 + AluSp SINE Alu 3 312 -1 3954 103 20 0 chr9 141327599 141328142 -943302 - MER41A LTR ERV1 0 554 1 301 267 23 30 chr9 141328338 141328469 -942975 + L2 LINE L2 2922 3051 -262 332 295 19 90 chr9 141328497 141328555 -942889 + L2 LINE L2 3168 3229 -84 2071 98 40 3 chr9 141328555 141328851 -942593 - AluSg SINE Alu -3 307 1 332 295 19 90 chr9 141328851 141328948 -942496 + L2 LINE L2 3229 3312 -1 204 313 47 0 chr9 141328959 141329023 -942421 + L2 LINE L2 3206 3272 0 2355 55 0 32 chr9 141329859 141330167 -941277 - AluY SINE Alu -13 298 1 2434 60 3 0 chr9 141330167 141330468 -940976 - AluSp SINE Alu -11 302 1 1586 150 20 4 chr9 141331185 141331461 -939983 - AluJb SINE Alu 0 306 27 30 45 0 0 chr9 141333080 141333124 -938320 + GC_rich Low_complexity Low_complexity 1 44 0 313 214 16 5 chr9 141333408 141333499 -937945 - AluJ/monomer SINE Alu -247 53 1 502 213 15 15 chr9 141333501 141333637 -937807 - L1MDb LINE L1 -5235 1174 1039 2439 55 0 10 chr9 141333831 141334139 -937305 + AluY SINE Alu 1 305 -6 872 94 47 0 chr9 141334771 141334899 -936545 + AluJo SINE Alu 1 134 -178 536 178 40 0 chr9 141334987 141335088 -936356 - AluJb SINE Alu -3 309 205 273 277 20 0 chr9 141335126 141335227 -936217 - L1MDb LINE L1 -5413 996 894 1664 108 67 30 chr9 141336077 141336346 -935098 - AluSx SINE Alu -33 279 1 2433 69 10 0 chr9 141336569 141336873 -934571 - AluY SINE Alu -4 307 1 2386 47 0 14 chr9 141341898 141342195 -929249 - AluY SINE Alu -18 293 1 2222 86 17 0 chr9 141342195 141342496 -928948 - AluSx SINE Alu -6 306 1 286 362 43 0 chr9 141344605 141344699 -926745 + MIR SINE MIR 96 193 -69 29 78 0 0 chr9 141345430 141345494 -925950 + GC_rich Low_complexity Low_complexity 1 64 0 200 283 10 20 chr9 141345525 141345624 -925820 + (CGG)n Simple_repeat Simple_repeat 1 98 0 203 172 0 17 chr9 141345719 141345777 -925667 + GA-rich Low_complexity Low_complexity 1 57 0 1984 116 13 10 chr9 141346449 141346751 -924693 - AluSx SINE Alu -9 303 1 379 213 0 86 chr9 141348105 141348279 -923165 + G-rich Low_complexity Low_complexity 3 161 0 180 0 0 0 chr9 141348555 141348575 -922869 + (CCCCG)n Simple_repeat Simple_repeat 5 24 0 223 250 0 36 chr9 141352378 141352510 -918934 + G-rich Low_complexity Low_complexity 1 127 0 1940 114 3 49 chr9 141354637 141354772 -916672 + AluSx SINE Alu 12 152 -160 2316 59 28 0 chr9 141354772 141355061 -916383 + AluY SINE Alu 1 297 -14 1940 114 3 49 chr9 141355061 141355231 -916213 + AluSx SINE Alu 152 303 -9 190 260 41 55 chr9 141355309 141355382 -916062 - L2 LINE L2 0 3272 3201 362 345 86 15 chr9 141355577 141355774 -915670 - L1ME3A LINE L1 -265 5905 5695 2078 124 7 0 chr9 141355780 141356087 -915357 - AluSx SINE Alu -3 309 1 275 153 17 0 chr9 141356089 141356148 -915296 - AluS SINE Alu -240 60 1 1700 136 39 11 chr9 141356285 141356595 -914849 - AluSg SINE Alu 0 318 1 1039 110 0 0 chr9 141356595 141356731 -914713 - AluSq/x SINE Alu -177 136 1 488 172 138 35 chr9 141356736 141356852 -914592 - FLAM_A SINE Alu -5 128 1 3284 148 8 0 chr9 141356870 141357363 -914081 + LOR1a LTR ERV1 1 497 0 929 221 14 24 chr9 141357423 141357636 -913808 - AluJo SINE Alu -17 295 85 242 182 0 0 chr9 141357636 141357680 -913764 - Alu SINE Alu -52 248 205 377 214 19 110 chr9 141357884 141358038 -913406 + MER20 DNA MER1_type 5 144 -75 218 241 0 46 chr9 141360330 141360417 -911027 + (CAGGG)n Simple_repeat Simple_repeat 1 83 0 209 341 57 0 chr9 141362006 141362094 -909350 + L2 LINE L2 3142 3234 -38 827 115 0 0 chr9 141362267 141362380 -909064 + FLAM_C SINE Alu 1 113 -30 2114 93 13 22 chr9 141362798 141363111 -908333 + AluSx SINE Alu 1 310 -2 1811 137 20 17 chr9 141363120 141363413 -908031 + AluJb SINE Alu 1 294 -18 1926 92 71 4 chr9 141364001 141364282 -907162 + AluY SINE Alu 1 300 -11 2135 77 3 40 chr9 141366964 141367287 -904157 + AluY SINE Alu 1 311 0 257 87 0 0 chr9 141370395 141370441 -901003 + Alu SINE Alu 256 301 0 239 308 0 0 chr9 141371915 141371993 -899451 + G-rich Low_complexity Low_complexity 3 80 0 485 208 6 0 chr9 141372711 141372884 -898560 + (CA)n Simple_repeat Simple_repeat 2 175 0 312 228 0 0 chr9 141372906 141373020 -898424 + (CA)n Simple_repeat Simple_repeat 2 115 0 342 0 0 0 chr9 141376041 141376079 -895365 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 228 263 0 74 chr9 141378051 141378241 -893203 + C-rich Low_complexity Low_complexity 3 178 0 22 56 0 0 chr9 141378398 141378434 -893010 + GC_rich Low_complexity Low_complexity 1 36 0 1668 151 21 14 chr9 141385424 141385709 -885735 - AluJb SINE Alu -8 304 18 201 121 0 0 chr9 141386935 141386968 -884476 + (TGGGGG)n Simple_repeat Simple_repeat 2 34 0 2263 98 7 0 chr9 141388746 141389052 -882392 + AluY SINE Alu 1 308 -3 24 0 0 0 chr9 141390804 141390828 -880616 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 141391282 141391304 -880140 + GC_rich Low_complexity Low_complexity 1 22 0 263 233 0 23 chr9 141391613 141391699 -879745 + C-rich Low_complexity Low_complexity 4 87 0 193 292 21 0 chr9 141394580 141394628 -876816 - L2 LINE L2 -3 3269 3221 232 312 9 18 chr9 141395359 141395468 -875976 + Zaphod DNA AcHobo 689 796 -3235 2175 113 10 0 chr9 141395482 141395783 -875661 + AluSx SINE Alu 1 304 -8 2208 100 0 31 chr9 141395794 141396115 -875329 + AluSx SINE Alu 1 311 -1 822 127 0 52 chr9 141396126 141396260 -875184 + FLAM_C SINE Alu 1 127 -6 293 124 15 0 chr9 141396923 141396999 -874445 - AluJ/FLAM SINE Alu -243 59 1 254 294 76 8 chr9 141397683 141397802 -873642 - MER110A LTR ERV1 -282 186 60 1810 170 7 3 chr9 141398271 141398571 -872873 - AluJo SINE Alu -11 301 1 268 122 20 0 chr9 141400213 141400255 -871189 + Alu SINE Alu 2 44 -256 296 181 64 46 chr9 141400255 141400427 -871017 + AluS SINE Alu 1 60 -242 301 70 0 0 chr9 141400427 141400470 -870974 + Alu SINE Alu 1 43 -257 793 160 0 0 chr9 141400470 141400589 -870855 + FLAM_C SINE Alu 1 119 -24 232 380 6 6 chr9 141401743 141401906 -869538 + (CA)n Simple_repeat Simple_repeat 1 163 0 325 324 70 7 chr9 141403373 141403515 -867929 + L2 LINE L2 3122 3272 0 717 166 12 12 chr9 141403519 141403772 -867672 + (TGGA)n Simple_repeat Simple_repeat 1 253 0 631 349 62 37 chr9 141405609 141406013 -865431 - L1M4 LINE L1 -504 5670 5257 1760 186 123 21 chr9 141406873 141407346 -864098 - L1MB7 LINE L1 -90 6094 5574 2177 101 0 0 chr9 141407376 141407664 -863780 - AluSx SINE Alu -6 306 19 1087 261 93 42 chr9 141407850 141408332 -863112 - L1MD2 LINE L1 -369 5990 5484 1538 202 10 10 chr9 141408335 141408637 -862807 - AluJo SINE Alu -10 302 1 192 302 0 0 chr9 141408641 141408727 -862717 + T-rich Low_complexity Low_complexity 1 86 0 1564 166 6 63 chr9 141408748 141408963 -862481 - AluJo SINE Alu 0 312 121 2062 123 7 7 chr9 141408963 141409272 -862172 - AluSc SINE Alu 0 309 1 1564 166 6 63 chr9 141409272 141409387 -862057 - AluJo SINE Alu -191 121 1 1977 247 34 58 chr9 141409389 141409612 -861832 - L1MD2 LINE L1 -1440 4706 4479 1551 167 24 8 chr9 141409612 141409864 -861580 - AluJb SINE Alu -56 256 1 1977 247 34 58 chr9 141409864 141410466 -860978 - L1MD2 LINE L1 -1667 4479 3912 2018 118 20 3 chr9 141410466 141410763 -860681 + AluSq SINE Alu 1 302 -11 1977 247 34 58 chr9 141410763 141411033 -860411 - L1MD2 LINE L1 -2234 3912 3637 3122 235 159 32 chr9 141411033 141412140 -859304 + MLT-int LTR MaLR 2 1248 -487 547 162 0 57 chr9 141612141 141612246 -659198 - AluJb SINE Alu -104 208 110 1167 135 116 14 chr9 141613307 141613522 -657922 + AluJo SINE Alu 49 285 -27 363 324 74 17 chr9 141613526 141613746 -657698 - L1M4 LINE L1 -734 5450 5219 336 308 11 43 chr9 141617426 141617611 -653833 + C-rich Low_complexity Low_complexity 1 179 0 333 308 11 38 chr9 141617777 141617962 -653482 + C-rich Low_complexity Low_complexity 1 180 0 290 250 24 12 chr9 141618142 141618226 -653218 + HAL1 LINE L1 1744 1828 -679 1114 89 0 54 chr9 141618247 141618415 -653029 - AluY SINE Alu -152 159 1 392 234 23 23 chr9 141618415 141618543 -652901 - HAL1 LINE L1 -1260 1247 1120 1298 241 70 4 chr9 141618800 141618887 -652557 - L1MC/D LINE L1 -601 5563 5483 2202 116 0 0 chr9 141618887 141619189 -652255 - AluSx SINE Alu -10 302 1 1298 241 70 4 chr9 141619189 141619881 -651563 - L1MC/D LINE L1 -681 5483 4920 1954 104 28 0 chr9 141619885 141620174 -651270 + THE1B LTR MaLR 1 297 -67 2260 105 0 0 chr9 141620175 141620471 -650973 - AluSg SINE Alu -14 296 1 2249 84 0 0 chr9 141620475 141620760 -650684 - AluSx SINE Alu -10 302 18 277 317 6 33 chr9 141623842 141624022 -647422 + C-rich Low_complexity Low_complexity 2 176 0 303 191 0 79 chr9 141625798 141625950 -645494 + (CGGGG)n Simple_repeat Simple_repeat 5 144 0 24 32 0 0 chr9 141631106 141631137 -640307 + GC_rich Low_complexity Low_complexity 1 31 0 343 247 41 12 chr9 141638018 141638188 -633256 + MER74B LTR ERVL 250 424 -198 318 228 44 35 chr9 141638707 141638821 -632623 - L1MC/D LINE L1 -2555 3591 3477 530 129 0 21 chr9 141638854 141638947 -632497 + AluJ/FRAM SINE Alu 222 312 0 2841 256 84 32 chr9 141638951 141639699 -631745 + L1M4 LINE L1 3579 4415 -1731 2395 74 0 0 chr9 141639699 141639996 -631448 + AluSg1 SINE Alu 1 297 -12 2841 256 84 32 chr9 141639996 141640456 -630988 + L1M4 LINE L1 4415 4850 -1296 328 212 0 35 chr9 141640612 141640697 -630747 - MSTA LTR MaLR 0 428 347 2060 100 0 0 chr9 141640999 141641305 -630139 + AluSx SINE Alu 14 319 0 645 140 0 0 chr9 141641924 141642031 -629413 + MSTA LTR MaLR 1 107 -321 335 197 28 0 chr9 141642049 141642120 -629324 + AluJ/FRAM SINE Alu 217 289 -13 279 116 70 0 chr9 141642190 141642276 -629168 + L1MB4 LINE L1 6089 6180 0 750 119 0 0 chr9 141642331 141642440 -629004 + AluSp/q SINE Alu 200 308 -5 394 295 79 53 chr9 141642452 141642832 -628612 + L1MEd LINE L1 860 1249 -4870 602 345 66 27 chr9 141643004 141643387 -628057 + L1MEd LINE L1 3063 3472 -2657 1079 157 79 35 chr9 141643393 141643622 -627822 - AluJo SINE Alu -9 303 65 647 110 11 0 chr9 141643743 141643834 -627610 - AluSg1 SINE Alu -217 92 1 1794 284 107 30 chr9 141643857 141644855 -626589 + HAL1 LINE L1 1427 2501 -6 241 330 153 0 chr9 141644935 141645053 -626391 + MIR3 SINE MIR 42 177 -31 2150 80 21 0 chr9 141645615 141645902 -625542 - AluSc SINE Alu -16 293 1 1974 71 97 0 chr9 141649841 141650110 -621334 + AluY SINE Alu 1 295 -16 235 271 43 0 chr9 141650128 141650198 -621246 + HsTC2 DNA Tc2 1801 1873 -25 1960 236 25 0 chr9 141650247 141650725 -620719 + L1MC1 LINE L1 5492 5981 -352 269 231 42 0 chr9 141650946 141651025 -620419 + L1MD3 LINE L1 7907 8040 -2 2110 113 3 0 chr9 141651030 141651332 -620112 - AluSx SINE Alu -9 303 1 2189 103 0 7 chr9 141651615 141651917 -619527 - AluSx SINE Alu -12 300 1 310 271 35 111 chr9 141651924 141652093 -619351 - L1ME4a LINE L1 -174 5947 5794 1978 105 56 7 chr9 141652093 141652378 -619066 - AluSg SINE Alu -11 299 1 310 271 35 111 chr9 141652378 141652407 -619037 - L1ME4a LINE L1 -327 5794 5764 362 252 99 0 chr9 141652504 141652615 -618829 - MER99 DNA DNA -705 123 2 199 337 82 0 chr9 141654911 141655009 -616435 + L2 LINE L2 2678 2783 -531 2850 267 75 39 chr9 141657461 141658254 -613190 + L1MDb LINE L1 817 1580 -4826 1671 189 7 10 chr9 141658254 141658555 -612889 - AluJo SINE Alu -12 300 1 2850 267 75 39 chr9 141658555 141659273 -612171 + L1MDb LINE L1 1580 2340 -4066 1034 177 0 6 chr9 141659273 141659448 -611996 + FAM SINE Alu 1 174 -1 2850 267 75 39 chr9 141659448 141659656 -611788 + L1MDb LINE L1 2340 2539 -3867 382 152 152 9 chr9 141659742 141659847 -611597 + MLT1C LTR MaLR 17 136 -331 202 321 232 10 chr9 141659912 141660214 -611230 - L2 LINE L2 -60 3253 2885 393 134 29 119 chr9 141660733 141661120 -610324 + (GGCTG)n Simple_repeat Simple_repeat 1 352 0 245 293 51 25 chr9 141662684 141662841 -608603 + C-rich Low_complexity Low_complexity 5 165 0 2364 63 3 3 chr9 141663604 141663903 -607541 - AluY SINE Alu -12 299 1 1831 98 113 4 chr9 141664292 141664567 -606877 - AluSx SINE Alu -7 305 1 521 200 0 0 chr9 141664592 141664677 -606767 + AluS SINE Alu 3 87 -226 1645 80 9 5 chr9 141664777 141665030 -606414 + AluSp SINE Alu 61 314 0 25 0 0 0 chr9 141665736 141665761 -605683 + AT_rich Low_complexity Low_complexity 1 25 0 2211 105 0 3 chr9 141665809 141666114 -605330 - AluSg SINE Alu -6 304 1 268 262 122 0 chr9 141667143 141667250 -604194 - L2 LINE L2 -851 2463 2344 360 228 0 4 chr9 141667395 141667659 -603785 + (CA)n Simple_repeat Simple_repeat 1 262 0 364 390 57 0 chr9 141670183 141670360 -601084 + L1M4 LINE L1 4743 4929 -1217 232 243 0 14 chr9 141670970 141671040 -600404 + G-rich Low_complexity Low_complexity 6 74 0 503 279 157 50 chr9 141671083 141671363 -600081 + L1MC5 LINE L1 7616 7925 -36 1664 195 3 0 chr9 141671386 141671684 -599760 + AluJb SINE Alu 1 299 -13 285 152 13 38 chr9 141671688 141671767 -599677 + GA-rich Low_complexity Low_complexity 4 80 0 238 299 82 30 chr9 141671934 141672068 -599376 + L1MC5 LINE L1 7773 7913 -48 2312 92 3 0 chr9 141672071 141672374 -599070 + AluSx SINE Alu 1 304 -8 26 30 0 0 chr9 141672422 141672455 -598989 + AT_rich Low_complexity Low_complexity 1 33 0 1333 217 40 73 chr9 141673412 141673864 -597580 + LTR42 LTR ERVL 59 495 0 2035 121 3 0 chr9 141674567 141674856 -596588 + AluSp SINE Alu 16 305 -8 24 0 0 0 chr9 141674908 141674932 -596512 + AT_rich Low_complexity Low_complexity 1 24 0 666 202 32 16 chr9 141674937 141675061 -596383 + FLAM_A SINE Alu 1 126 -7 1571 165 6 105 chr9 141675075 141675409 -596035 + AluJo SINE Alu 1 301 -1 433 248 187 45 chr9 141675409 141675450 -595994 + L1M4 LINE L1 4912 4946 -1200 2246 90 3 6 chr9 141675450 141675761 -595683 + AluY SINE Alu 1 310 -1 433 248 187 45 chr9 141675761 141676085 -595359 + L1M4 LINE L1 4946 5333 -813 245 270 55 0 chr9 141676291 141676454 -594990 + (AGCTG)n Simple_repeat Simple_repeat 1 172 0 8279 61 5 4 chr9 141676929 141677935 -593509 + LTR13 LTR ERVK 1 1007 0 1832 191 62 15 chr9 141677973 141678375 -593069 + LTR13 LTR ERVK 1 421 -586 516 216 9 0 chr9 141678373 141678534 -592910 + LTR13 LTR ERVK 313 421 -586 * 3117 177 27 35 chr9 141678532 141679340 -592104 + LTR13 LTR ERVK 313 1007 0 338 308 75 66 chr9 141679474 141679809 -591635 + L1ME3A LINE L1 5833 6170 0 1625 147 9 78 chr9 141679823 141680143 -591301 + AluJb SINE Alu 1 298 -14 2023 100 53 7 chr9 141680375 141680674 -590770 + AluSp SINE Alu 1 313 0 1578 93 0 32 chr9 141683008 141683088 -588356 - AluSc SINE Alu -100 209 128 279 0 0 0 chr9 141683088 141683119 -588325 + (TA)n Simple_repeat Simple_repeat 1 31 0 2576 55 0 0 chr9 141683119 141683430 -588014 - AluY SINE Alu 0 311 1 1578 93 0 32 chr9 141683430 141683564 -587880 - AluSc SINE Alu -179 130 1 2208 110 3 0 chr9 141683571 141683872 -587572 - AluSx SINE Alu -10 302 1 2158 104 3 19 chr9 141684093 141684402 -587042 - AluSq SINE Alu -9 304 1 1676 237 83 26 chr9 141684402 141684930 -586514 + MER74B LTR ERVL 65 622 0 731 317 200 4 chr9 141684931 141685401 -586043 - L2 LINE L2 -2588 726 165 2364 66 3 35 chr9 141685484 141685802 -585642 - AluY SINE Alu -1 310 3 285 274 0 63 chr9 141686665 141686855 -584589 + G-rich Low_complexity Low_complexity 2 179 0 1402 96 5 0 chr9 141687163 141687351 -584093 - AluSp SINE Alu -124 189 1 813 149 0 57 chr9 141687355 141687496 -583948 - FLAM_C SINE Alu 0 133 1 1674 64 15 66 chr9 141687500 141687807 -583637 - L1PA14 LINE L1 -5 6156 5835 2393 88 0 0 chr9 141687807 141688114 -583330 - AluSx SINE Alu -5 307 1 1674 64 15 66 chr9 141688114 141688159 -583285 - L1PA14 LINE L1 -326 5835 5789 1959 119 10 10 chr9 141688159 141688452 -582992 - AluSx SINE Alu -13 299 7 1674 64 15 66 chr9 141688452 141688504 -582940 - L1PA14 LINE L1 -372 5789 5703 236 114 0 0 chr9 141688557 141688592 -582852 + MLT1A1 LTR MaLR 1 35 -330 1707 153 7 4 chr9 141688592 141688866 -582578 - AluJo SINE Alu -34 278 4 249 228 10 119 chr9 141688877 141688913 -582531 + L2 LINE L2 2203 2241 -1073 2303 98 0 0 chr9 141688913 141689210 -582234 - AluSg SINE Alu -13 297 1 249 228 10 119 chr9 141689210 141689274 -582170 + L2 LINE L2 2241 2292 -1022 344 174 120 11 chr9 141689301 141689393 -582051 + MLT1I LTR MaLR 308 409 0 1093 164 135 5 chr9 141689435 141689643 -581801 - MER46A DNA MER2_type -1 235 1 729 111 0 0 chr9 141689713 141689812 -581632 - AluY SINE Alu -21 290 192 1880 121 0 0 chr9 141689813 141690070 -581374 - AluSx SINE Alu -21 291 35 527 334 121 12 chr9 141690087 141690410 -581034 + L2 LINE L2 2887 3244 -69 200 194 149 30 chr9 141690400 141690467 -580977 - L2 LINE L2 -1411 1903 1829 * 1837 203 135 18 chr9 141690472 141690730 -580714 + MLT1E2 LTR MaLR 2 229 -397 1927 150 7 0 chr9 141690730 141691023 -580421 + AluSx SINE Alu 1 295 -17 1837 203 135 18 chr9 141691023 141691321 -580123 + MLT1E2 LTR MaLR 229 623 -3 368 267 17 9 chr9 141691326 141691442 -580002 - L2 LINE L2 -1493 1821 1705 365 211 23 105 chr9 141691854 141691927 -579517 + LTR16C LTR ERVL 370 429 -62 2089 117 10 0 chr9 141691927 141692218 -579226 - AluSx SINE Alu -16 296 3 365 211 23 105 chr9 141692218 141692277 -579167 + LTR16C LTR ERVL 429 491 0 2379 70 0 7 chr9 141692399 141692699 -578745 - AluSx SINE Alu -14 298 1 2444 72 0 0 chr9 141692773 141693078 -578366 - AluY SINE Alu -6 305 1 2184 124 0 0 chr9 141693078 141693385 -578059 - AluSg SINE Alu -3 307 1 1544 107 0 30 chr9 141693387 141693478 -577966 - AluSp SINE Alu -86 227 135 1932 110 0 21 chr9 141693478 141693784 -577660 - AluSc SINE Alu 0 304 5 1544 107 0 30 chr9 141693784 141693925 -577519 - AluSp SINE Alu -178 135 1 803 230 0 18 chr9 141694180 141694345 -577099 + AluJb SINE Alu 134 295 -17 666 302 94 12 chr9 141694442 141694770 -576674 + L2 LINE L2 1612 1966 -1348 2055 73 44 0 chr9 141695006 141695308 -576136 + AluY SINE Alu 1 314 0 2356 4 0 0 chr9 141695445 141695704 -575740 + AluYa5 SINE Alu 1 259 -52 820 102 0 0 chr9 141695707 141695825 -575619 + AluSg/x SINE Alu 188 305 -5 550 51 25 0 chr9 141695827 141695906 -575538 + L1PA14 LINE L1 5777 5857 -304 368 170 53 38 chr9 141696006 141696350 -575094 + (CACTC)n Simple_repeat Simple_repeat 1 349 0 314 157 51 39 chr9 141696374 141696552 -574892 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 * 331 159 6 55 chr9 141696534 141696716 -574728 + (CTCA)n Simple_repeat Simple_repeat 2 174 0 457 126 6 55 chr9 141696737 141696919 -574525 + (CTCA)n Simple_repeat Simple_repeat 2 174 0 327 101 67 62 chr9 141696914 141697093 -574351 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 * 196 311 0 16 chr9 141698573 141698634 -572810 - L2 LINE L2 -26 3287 3228 439 295 33 0 chr9 141699839 141699961 -571483 + L1MD3 LINE L1 7869 7994 -1 2260 65 0 0 chr9 141700049 141700339 -571105 - AluY SINE Alu -21 290 1 924 35 0 0 chr9 141700340 141700455 -570989 - AluY SINE Alu -196 115 1 2306 67 0 13 chr9 141701595 141701895 -569549 - AluY SINE Alu -15 296 1 381 306 77 12 chr9 141702010 141702180 -569264 - L1ME1 LINE L1 -93 6073 5893 837 259 29 54 chr9 141702418 141702696 -568748 - L1ME1 LINE L1 -402 5764 5497 402 261 43 100 chr9 141702876 141703156 -568288 + MER21B LTR ERV1 1 264 -599 6523 108 22 21 chr9 141703206 141704159 -567285 - LTR13 LTR ERVK 0 954 1 2223 73 42 0 chr9 141704254 141704542 -566902 - AluY SINE Alu -11 300 1 1232 156 110 53 chr9 141704545 141704827 -566617 - AluY SINE Alu -13 298 1 1250 153 0 0 chr9 141704831 141705027 -566417 - AluSg/x SINE Alu -19 293 98 1885 149 28 72 chr9 141705027 141705483 -565961 + MER61C LTR ERV1 14 433 -1 595 214 0 0 chr9 141705488 141705586 -565858 - AluJ/FLAM SINE Alu -213 99 2 1804 137 3 7 chr9 141705598 141705883 -565561 - AluSx SINE Alu -18 294 11 1297 82 113 0 chr9 141705903 141706098 -565346 - AluY SINE Alu -9 302 86 2203 47 0 40 chr9 141706235 141706552 -564892 + AluY SINE Alu 1 305 0 387 239 89 38 chr9 141706693 141706944 -564500 - L1M4 LINE L1 -1980 4166 3879 727 212 7 7 chr9 141707011 141707157 -564287 - Tigger7 DNA MER2_type -7 2480 2335 1058 244 19 26 chr9 141707230 141707392 -564052 - Tigger7 DNA MER2_type -465 268 107 2153 83 10 7 chr9 141707392 141707708 -563736 - AluSg SINE Alu 0 310 1 1058 244 19 26 chr9 141707708 141707815 -563629 - Tigger7 DNA MER2_type -626 107 1 281 278 283 5 chr9 141707816 141708007 -563437 - L1M4 LINE L1 -2297 3849 3606 279 253 172 3 chr9 141708013 141708142 -563302 - L1ME1 LINE L1 -753 5417 5269 2003 131 3 0 chr9 141708651 141708942 -562502 + AluSx SINE Alu 1 292 -20 1649 213 57 33 chr9 141709265 141709687 -561757 - MER70A LTR ERVL -39 433 2 2106 64 14 3 chr9 141710395 141710707 -560737 - AluY SINE Alu 0 311 1 636 220 156 0 chr9 141711921 141712062 -559382 - AluJb SINE Alu -30 282 120 409 221 166 64 chr9 141712062 141712297 -559147 + L1ME4a LINE L1 5856 6114 -7 2035 128 10 3 chr9 141712486 141712791 -558653 - AluJb SINE Alu -5 307 1 400 218 49 84 chr9 141712855 141712936 -558508 - L1MC4 LINE L1 -143 7899 7824 1730 176 6 10 chr9 141712936 141713248 -558196 - AluJb SINE Alu 0 312 2 400 218 49 84 chr9 141713248 141713308 -558136 - L1MC4 LINE L1 -218 7824 7763 1397 191 0 31 chr9 141714101 141714394 -557050 + AluJb SINE Alu 1 284 -28 39 0 0 0 chr9 141714397 141714436 -557008 + AT_rich Low_complexity Low_complexity 1 39 0 311 125 71 38 chr9 141714529 141714776 -556668 + (CACTC)n Simple_repeat Simple_repeat 1 255 0 207 178 0 55 chr9 141714783 141714856 -556588 + (CTCA)n Simple_repeat Simple_repeat 3 71 0 309 122 70 32 chr9 141714856 141715012 -556432 + (CACTC)n Simple_repeat Simple_repeat 1 162 0 349 140 50 45 chr9 141715058 141715237 -556207 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 311 109 77 39 chr9 141715261 141715417 -556027 + (CACTC)n Simple_repeat Simple_repeat 1 162 0 231 127 71 40 chr9 141715430 141715556 -555888 + (CACTC)n Simple_repeat Simple_repeat 1 130 0 745 123 35 9 chr9 141717176 141717290 -554154 - FLAM_C SINE Alu -16 117 1 2042 111 21 0 chr9 141717365 141717654 -553790 + AluSg SINE Alu 1 295 -15 965 101 55 96 chr9 141717962 141717993 -553451 - Tigger4(Zombi) DNA MER2_type 0 2731 2700 1856 92 48 48 chr9 141717993 141718288 -553156 + AluSx SINE Alu 1 295 -17 1725 133 39 4 chr9 141718294 141718573 -552871 + AluSp SINE Alu 15 303 -10 965 101 55 96 chr9 141718573 141718733 -552711 - Tigger4(Zombi) DNA MER2_type -36 2695 2541 304 109 156 0 chr9 141718744 141718808 -552636 - HY3 scRNA scRNA -2 99 26 23 0 0 0 chr9 141718814 141718837 -552607 + AT_rich Low_complexity Low_complexity 1 23 0 1356 116 9 23 chr9 141718864 141719079 -552365 - AluJo SINE Alu -80 232 21 234 171 500 0 chr9 141719113 141719195 -552249 - Tigger4(Zombi) DNA MER2_type -2607 124 2 1000 171 225 4 chr9 141721319 141721559 -549885 - AluJo SINE Alu -7 295 3 2136 96 3 3 chr9 141721583 141721874 -549570 + AluSc SINE Alu 1 291 -18 2034 130 0 0 chr9 141721894 141722195 -549249 + AluSx SINE Alu 1 301 -11 2189 117 0 3 chr9 141722210 141722517 -548927 + AluSx SINE Alu 1 306 -6 710 238 6 30 chr9 141722606 141722774 -548670 + FRAM SINE Alu 1 164 -12 917 202 137 0 chr9 141722775 141723023 -548421 + L1MB4 LINE L1 5714 5995 -185 282 234 0 0 chr9 141723024 141723088 -548356 + L1MB4 LINE L1 6035 6098 -82 1107 84 13 0 chr9 141723088 141723242 -548202 - AluSc SINE Alu -5 304 149 572 43 0 0 chr9 141723242 141723312 -548132 - AluS SINE Alu -242 71 2 306 171 11 80 chr9 141723314 141723338 -548106 + L1MB4 LINE L1 6093 6117 -63 8305 55 6 5 chr9 141723338 141724344 -547100 + LTR13 LTR ERVK 1 1007 0 306 171 11 80 chr9 141724344 141724407 -547037 + L1MB4 LINE L1 6117 6174 -6 2259 96 0 10 chr9 141724796 141724930 -546514 + AluY SINE Alu 1 135 -176 2441 50 0 7 chr9 141724930 141725230 -546214 + AluY SINE Alu 1 298 -13 2259 96 0 10 chr9 141725230 141725409 -546035 + AluY SINE Alu 135 311 0 957 258 92 3 chr9 141725415 141725710 -545734 + L1MC4 LINE L1 7162 7482 -560 1576 83 0 14 chr9 141725710 141725927 -545517 + AluSg/x SINE Alu 87 300 -10 743 246 35 0 chr9 141726004 141726207 -545237 + L1M4 LINE L1 2324 2533 -3613 1552 221 112 26 chr9 141726327 141726418 -545026 + L1M4 LINE L1 2468 2550 -3596 2287 77 0 3 chr9 141726418 141726716 -544728 - AluY SINE Alu -14 297 1 1552 221 112 26 chr9 141726716 141727162 -544282 + L1M4 LINE L1 2550 3051 -3095 959 196 229 12 chr9 141727184 141727246 -544198 + AluJo SINE Alu 1 48 -254 2050 102 32 0 chr9 141727246 141727531 -543913 + AluSx SINE Alu 1 294 -18 959 196 229 12 chr9 141727531 141727713 -543731 + AluJo SINE Alu 48 298 -4 705 316 144 60 chr9 141727717 141727803 -543641 - L2 LINE L2 -1625 1689 1612 2205 107 0 3 chr9 141727803 141728112 -543332 + AluSg SINE Alu 1 308 -2 705 316 144 60 chr9 141728112 141728915 -542529 - L2 LINE L2 -1702 1612 725 425 167 47 0 chr9 141731904 141732054 -539390 + (TCCA)n Simple_repeat Simple_repeat 1 157 0 225 119 48 0 chr9 141732056 141732098 -539346 + (CCCA)n Simple_repeat Simple_repeat 3 46 0 1022 303 72 17 chr9 141732282 141732741 -538703 + L2 LINE L2 2458 2941 -373 249 225 35 160 chr9 141732744 141732944 -538500 + L2 LINE L2 3049 3223 -90 920 166 0 0 chr9 141732950 141733095 -538349 + AluJb SINE Alu 130 274 -38 26 0 0 27 chr9 141733123 141733139 -538305 + AT_rich Low_complexity Low_complexity 1 16 -20 2168 89 3 3 chr9 141733139 141733430 -538014 - AluSc SINE Alu -18 291 1 26 0 0 27 chr9 141733430 141733450 -537994 + AT_rich Low_complexity Low_complexity 16 36 0 1976 151 6 0 chr9 141733453 141733764 -537680 + AluSq SINE Alu 1 313 0 297 267 167 0 chr9 141733773 141733863 -537581 + L2 LINE L2 3209 3313 0 400 333 74 34 chr9 141734227 141734524 -536920 - L2 LINE L2 -443 2871 2563 2535 52 0 0 chr9 141735025 141735332 -536112 + AluY SINE Alu 1 307 -4 2400 70 3 19 chr9 141735342 141735658 -535786 + AluY SINE Alu 1 311 0 2078 118 0 0 chr9 141735731 141736020 -535424 + AluSc SINE Alu 1 289 -20 1000 408 0 1517 chr9 141738221 141738401 -533043 - Tigger3(Golem) DNA MER2_type -90 2939 2440 1648 157 3 63 chr9 141738401 141738554 -532890 + AluJo SINE Alu 1 125 -187 2154 84 3 3 chr9 141738554 141738851 -532593 + AluY SINE Alu 1 297 -14 1648 157 3 63 chr9 141738851 141739028 -532416 + AluJo SINE Alu 125 311 -1 1000 408 0 1517 chr9 141739028 141739126 -532318 - Tigger3(Golem) DNA MER2_type -589 2440 1 360 210 0 0 chr9 141739785 141739847 -531597 - MER94 DNA DNA 0 134 73 693 161 175 0 chr9 141739975 141740112 -531332 + FRAM SINE Alu 1 154 -22 2343 44 3 10 chr9 141740116 141740411 -531033 - AluY SINE Alu -18 293 1 23 33 0 0 chr9 141740788 141740818 -530626 + GC_rich Low_complexity Low_complexity 1 30 0 304 229 94 10 chr9 141741176 141741272 -530172 + LTR8A LTR ERV1 106 209 -518 791 223 173 28 chr9 141741354 141741600 -529844 + LTR8A LTR ERV1 358 663 -64 2454 60 0 0 chr9 141741600 141741901 -529543 - AluY SINE Alu -10 301 1 791 223 173 28 chr9 141741901 141741977 -529467 + LTR8A LTR ERV1 663 727 0 353 297 108 28 chr9 141741971 141742318 -529126 + MLT1C LTR MaLR 2 463 -4 * 587 217 21 48 chr9 141743673 141743785 -527659 + LTR8A LTR ERV1 544 651 -76 2488 57 0 0 chr9 141743785 141744085 -527359 - AluY SINE Alu -11 300 1 587 217 21 48 chr9 141744085 141744161 -527283 + LTR8A LTR ERV1 651 727 0 319 297 108 28 chr9 141744155 141744502 -526942 + MLT1C LTR MaLR 2 463 -4 * 884 78 0 16 chr9 141745751 141745879 -525565 + AluY SINE Alu 135 260 -51 262 234 24 73 chr9 141749016 141749140 -522304 + MLT1K LTR MaLR 471 588 0 641 154 8 92 chr9 141749240 141749293 -522151 + FLAM_A SINE Alu 2 58 -244 2053 115 27 0 chr9 141749293 141749589 -521855 + AluSx SINE Alu 1 304 -8 641 154 8 92 chr9 141749589 141749665 -521779 + FLAM_A SINE Alu 58 120 -182 308 235 0 105 chr9 141750425 141750625 -520819 + GA-rich Low_complexity Low_complexity 2 180 0 186 156 0 0 chr9 141754268 141754313 -517131 + C-rich Low_complexity Low_complexity 6 50 0 269 205 0 68 chr9 141754456 141754573 -516871 + (CGGGG)n Simple_repeat Simple_repeat 5 113 0 255 61 0 0 chr9 141754615 141754648 -516796 + (CCG)n Simple_repeat Simple_repeat 3 35 0 22 56 0 0 chr9 141754730 141754766 -516678 + GC_rich Low_complexity Low_complexity 1 36 0 202 143 48 0 chr9 141754805 141754847 -516597 + G-rich Low_complexity Low_complexity 2 45 0 2269 103 0 7 chr9 141755508 141755818 -515626 - AluSx SINE Alu 0 312 5 252 128 0 0 chr9 141755986 141756025 -515419 + Alu SINE Alu 1 39 -264 239 232 32 32 chr9 141756128 141756223 -515221 + G-rich Low_complexity Low_complexity 4 98 0 245 86 0 0 chr9 141757560 141757595 -513849 + Alu SINE Alu 15 49 -254 239 333 113 6 chr9 141758124 141758283 -513161 - MIR SINE MIR -20 242 67 2355 64 3 6 chr9 141758505 141758817 -512627 - AluY SINE Alu 0 311 1 317 298 88 103 chr9 141759619 141759769 -511675 - L1MC/D LINE L1 -2164 5644 5493 225 0 0 0 chr9 141759769 141759794 -511650 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1965 98 4 11 chr9 141759796 141760070 -511374 - AluSp SINE Alu -41 272 1 317 298 88 103 chr9 141760070 141760082 -511362 - L1MC/D LINE L1 -2316 5492 5481 1555 189 39 4 chr9 141760082 141760362 -511082 - AluSx SINE Alu -22 290 1 317 298 88 103 chr9 141760362 141760422 -511022 - L1MC/D LINE L1 -2327 5481 5420 1843 40 4 4 chr9 141760422 141760649 -510795 - AluY SINE Alu -84 227 1 317 298 88 103 chr9 141760649 141760683 -510761 - L1MC/D LINE L1 -2388 5420 5387 530 249 24 78 chr9 141760683 141760888 -510556 - MLT1H1 LTR MaLR 0 555 362 2199 114 0 7 chr9 141760928 141761099 -510345 - AluSx SINE Alu -8 304 134 2287 90 3 0 chr9 141761099 141761399 -510045 - AluSp SINE Alu -12 301 1 2199 114 0 7 chr9 141761399 141761533 -509911 - AluSx SINE Alu -178 134 1 1683 168 0 36 chr9 141761803 141762136 -509308 + AluJb SINE Alu 1 312 0 1812 151 6 35 chr9 141766623 141766941 -504503 + AluSx SINE Alu 1 309 -3 357 304 64 0 chr9 141767381 141767506 -503938 + MIR SINE MIR 109 241 -21 2326 77 3 0 chr9 141767649 141767948 -503496 - AluY SINE Alu -11 300 1 417 309 121 18 chr9 141767978 141768260 -503184 - L2 LINE L2 -85 3228 2918 370 218 49 84 chr9 141769886 141769946 -501498 + L1MC4 LINE L1 7763 7824 -218 1773 176 6 10 chr9 141769946 141770258 -501186 + AluJb SINE Alu 2 312 0 370 218 49 84 chr9 141770258 141770339 -501105 + L1MC4 LINE L1 7824 7899 -143 2076 128 10 3 chr9 141770403 141770708 -500736 + AluJb SINE Alu 1 307 -5 446 268 149 47 chr9 141770897 141771132 -500312 - L1ME4a LINE L1 -7 6114 5856 640 220 156 0 chr9 141771132 141771273 -500171 + AluJb SINE Alu 120 282 -30 2130 64 14 3 chr9 141772487 141772799 -498645 + AluY SINE Alu 1 311 0 1489 213 57 33 chr9 141773507 141773929 -497515 + MER70A LTR ERVL 2 433 -39 2043 131 3 0 chr9 141774252 141774543 -496901 - AluSx SINE Alu -20 292 1 345 348 130 47 chr9 141774789 141775088 -496356 + L1M4 LINE L1 4999 5322 -824 260 247 176 0 chr9 141775096 141775181 -496263 + L1M LINE L1 5318 5417 -880 245 278 283 5 chr9 141775187 141775378 -496066 + L1M4 LINE L1 3606 3849 -2297 970 244 19 26 chr9 141775379 141775486 -495958 + Tigger7 DNA MER2_type 1 107 -2380 2183 83 10 7 chr9 141775486 141775802 -495642 + AluSg SINE Alu 1 310 0 970 244 19 26 chr9 141775802 141775964 -495480 + Tigger7 DNA MER2_type 107 268 -2219 679 212 7 7 chr9 141776037 141776183 -495261 + Tigger7 DNA MER2_type 2435 2580 -7 347 259 85 53 chr9 141776312 141776501 -494943 + L1M4 LINE L1 3972 4166 -1980 2226 47 0 40 chr9 141776642 141776959 -494485 - AluY SINE Alu 0 305 1 1309 82 113 0 chr9 141777096 141777291 -494153 + AluY SINE Alu 86 302 -9 1831 137 3 7 chr9 141777311 141777596 -493848 + AluSx SINE Alu 11 294 -18 603 212 0 0 chr9 141777607 141777706 -493738 + AluJ/FLAM SINE Alu 1 99 -213 1713 155 28 72 chr9 141777711 141778167 -493277 - MER61C LTR ERV1 -1 433 14 1278 153 0 0 chr9 141778167 141778363 -493081 + AluSg/x SINE Alu 98 293 -19 1269 156 110 53 chr9 141778367 141778649 -492795 + AluY SINE Alu 1 298 -13 2604 29 0 3 chr9 141778652 141778958 -492486 + AluYa5 SINE Alu 1 305 -6 735 276 112 55 chr9 141778982 141779474 -491970 + HAL1 LINE L1 1623 2142 -365 2167 81 3 20 chr9 141780100 141780395 -491049 - AluSc SINE Alu -19 290 1 2069 138 0 0 chr9 141781549 141781847 -489597 + AluSx SINE Alu 1 298 -14 1938 121 33 0 chr9 141781851 141782158 -489286 + AluSg SINE Alu 1 316 0 1411 181 64 25 chr9 141782169 141782451 -488993 + AluSx SINE Alu 1 293 -19 2103 99 7 0 chr9 141782556 141782863 -488581 - AluSq SINE Alu 0 309 1 257 335 71 7 chr9 141782864 141783019 -488425 + L1ME3A LINE L1 5579 5743 -2065 1581 143 8 8 chr9 141784566 141784818 -486626 - AluJb SINE Alu -17 295 44 1593 192 0 22 chr9 141784967 141785284 -486160 + AluJo SINE Alu 2 311 -1 2406 88 6 19 chr9 141787410 141787727 -483717 - AluSq SINE Alu 0 313 1 8027 45 2 2 chr9 141788307 141789286 -482158 + LTR13 LTR ERVK 29 1007 0 2569 51 3 0 chr9 141791247 141791540 -479904 + AluY SINE Alu 1 294 -17 615 107 0 0 chr9 141791981 141792065 -479379 + AluSg SINE Alu 2 85 -225 2546 62 0 10 chr9 141792065 141792369 -479075 + AluY SINE Alu 1 301 -10 1610 99 45 0 chr9 141792368 141792589 -478855 + AluSg SINE Alu 74 304 -6 * 218 282 27 9 chr9 141793373 141793483 -477961 + G-rich Low_complexity Low_complexity 2 113 0 3962 252 57 24 chr9 141793600 141793847 -477597 - L1MEc LINE L1 -1778 4437 4199 2178 115 0 40 chr9 141793847 141794170 -477274 + AluSg SINE Alu 1 310 0 3962 252 57 24 chr9 141794170 141795231 -476213 - L1MEc LINE L1 -2016 4199 3087 1341 94 236 9 chr9 141795231 141795443 -476001 - AluSg1 SINE Alu -49 260 1 801 219 32 50 chr9 141795447 141795568 -475876 - L1MEc LINE L1 -3890 2506 2384 2571 48 0 0 chr9 141795568 141795861 -475583 - AluY SINE Alu -18 293 1 1494 209 10 14 chr9 141795861 141796157 -475287 - AluJo SINE Alu -17 295 1 801 219 32 50 chr9 141796157 141796317 -475127 - L1MEc LINE L1 -4010 2386 2229 391 286 51 40 chr9 141796334 141796509 -474935 - L1MEc LINE L1 -5508 697 521 2441 92 0 3 chr9 141796514 141796819 -474625 - AluSx SINE Alu -8 304 1 2168 112 0 10 chr9 141796830 141797125 -474319 - AluSc SINE Alu -17 292 1 242 218 18 0 chr9 141797452 141797507 -473937 - L1MEc LINE L1 -5964 241 186 326 296 56 84 chr9 141798479 141798692 -472752 + L1ME3A LINE L1 5817 6023 -147 445 271 42 0 chr9 141798803 141798921 -472523 - FLAM_A SINE Alu -10 123 1 23 0 0 0 chr9 141798963 141798986 -472458 + AT_rich Low_complexity Low_complexity 1 23 0 2057 141 7 0 chr9 141799015 141799306 -472138 + AluSx SINE Alu 1 293 -19 307 200 36 73 chr9 141801602 141801712 -469732 - L1ME3 LINE L1 -83 6079 5974 438 239 11 0 chr9 141801803 141801895 -469549 + MER58B DNA MER1_type 245 337 -4 304 318 9 0 chr9 141801930 141802040 -469404 - L1ME3 LINE L1 -236 5934 5824 329 208 149 56 chr9 141802080 141802258 -469186 + HAL1 LINE L1 863 1076 -1431 2466 94 0 0 chr9 141802258 141802566 -468878 + AluSg SINE Alu 1 308 -2 329 208 149 56 chr9 141802566 141802656 -468788 + HAL1 LINE L1 1076 1156 -1351 2653 46 0 3 chr9 141802656 141802960 -468484 + AluY SINE Alu 1 303 -8 1700 149 3 41 chr9 141802962 141803277 -468167 + AluY SINE Alu 1 303 -8 286 333 125 22 chr9 141803301 141803622 -467822 + L2 LINE L2 2467 2820 -494 508 188 200 29 chr9 141803627 141803797 -467647 + MER58C DNA MER1_type 16 214 -1 226 203 0 101 chr9 141806041 141806110 -465334 + L2 LINE L2 3184 3245 -68 285 269 170 6 chr9 141806140 141806322 -465122 - Charlie1b DNA MER1_type 0 523 312 467 264 187 0 chr9 141806444 141806679 -464765 - Charlie1b DNA MER1_type -151 372 94 1845 179 0 10 chr9 141806913 141807226 -464218 + AluJb SINE Alu 3 312 0 291 210 152 22 chr9 141807380 141807518 -463926 - L1ME4a LINE L1 -2 6119 5964 349 319 54 27 chr9 141808391 141808576 -462868 - L2 LINE L2 -1420 1894 1705 2059 108 0 30 chr9 141808581 141808878 -462566 + AluSx SINE Alu 3 290 -22 620 236 0 21 chr9 141808888 141809032 -462412 + FLAM_C SINE Alu 3 143 0 182 234 39 78 chr9 141809053 141809181 -462263 - L2 LINE L2 -1637 1677 1555 859 77 0 0 chr9 141809679 141809783 -461661 + AluSp/q SINE Alu 199 302 -11 1294 210 15 67 chr9 141809785 141809933 -461511 + AluJb SINE Alu 1 155 -157 216 0 0 0 chr9 141809933 141809957 -461487 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1294 210 15 67 chr9 141809957 141810137 -461307 + AluJb SINE Alu 155 312 0 1959 137 126 23 chr9 141810179 141810567 -460877 + MSTA LTR MaLR 1 428 0 873 180 13 0 chr9 141811553 141811703 -459741 - FRAM SINE Alu -14 152 1 2297 114 7 13 chr9 141811710 141812016 -459428 - AluSx SINE Alu -8 304 1 40 0 0 0 chr9 141812606 141812646 -458798 + AT_rich Low_complexity Low_complexity 1 40 0 1972 159 7 0 chr9 141814224 141814519 -456925 - AluSx SINE Alu -15 297 1 404 228 223 33 chr9 141815592 141816059 -455385 + MLT1G LTR MaLR 9 561 -29 496 209 82 30 chr9 141817768 141817902 -453542 + MIR SINE MIR 9 149 -113 31 26 0 0 chr9 141817992 141818030 -453414 + AT_rich Low_complexity Low_complexity 1 38 0 2242 124 0 3 chr9 141818750 141819056 -452388 + AluSx SINE Alu 1 305 -7 1630 183 96 18 chr9 141819505 141819838 -451606 + L1MB3 LINE L1 5446 5804 -367 953 114 30 0 chr9 141819839 141819970 -451474 + AluJb SINE Alu 1 135 -177 197 83 28 0 chr9 141819983 141820019 -451425 + (TA)n Simple_repeat Simple_repeat 1 37 0 1984 166 16 0 chr9 141820020 141820394 -451050 + L1MB3 LINE L1 5803 6182 -1 1321 96 0 11 chr9 141820583 141820761 -450683 + AluSg/x SINE Alu 135 310 0 951 190 18 0 chr9 141820792 141820955 -450489 - FRAM SINE Alu -10 166 1 249 243 29 0 chr9 141820994 141821064 -450380 + L1MC/D LINE L1 5828 5899 -1909 561 285 237 25 chr9 141821065 141821496 -449948 + L2 LINE L2 2456 2977 -337 2356 102 0 0 chr9 141821601 141821896 -449548 - AluSg SINE Alu -15 295 1 492 293 116 0 chr9 141822885 141822996 -448448 + L1MB4 LINE L1 4273 4370 -1776 2273 115 0 13 chr9 141822996 141823301 -448143 + AluSx SINE Alu 2 302 -10 492 293 116 0 chr9 141823301 141823448 -447996 + L1MB4 LINE L1 4370 4561 -1585 1247 222 92 12 chr9 141823460 141823798 -447646 - MLT1A1 LTR MaLR 0 365 1 2369 208 30 64 chr9 141823918 141824296 -447148 + L1MB4 LINE L1 4580 4969 -1177 2517 70 3 0 chr9 141824296 141824596 -446848 + AluY SINE Alu 7 307 -4 2369 208 30 64 chr9 141824596 141824639 -446805 + L1MB4 LINE L1 4969 5012 -1134 1770 172 30 0 chr9 141824639 141824935 -446509 + AluJb SINE Alu 1 305 -7 2369 208 30 64 chr9 141824935 141825244 -446200 + L1MB4 LINE L1 5012 5286 -860 549 216 9 0 chr9 141825244 141825355 -446089 + FLAM_A SINE Alu 1 112 -30 3668 182 71 23 chr9 141825372 141826246 -445198 + L1MB4 LINE L1 5265 6180 0 269 132 0 0 chr9 141826366 141826404 -445040 - Alu SINE Alu -263 40 3 1032 214 12 0 chr9 141826405 141826662 -444782 - L1M4 LINE L1 -901 5245 4986 2656 141 56 41 chr9 141826663 141826743 -444701 + Tigger3b DNA MER2_type 2 79 -2949 2056 120 7 36 chr9 141826743 141827051 -444393 + AluSx SINE Alu 1 299 -13 2656 141 56 41 chr9 141827051 141827503 -443941 + Tigger3b DNA MER2_type 79 542 -689 691 129 121 0 chr9 141827505 141827621 -443823 - FLAM_C SINE Alu -3 130 1 2239 109 3 0 chr9 141827633 141827927 -443517 - AluSx SINE Alu -17 295 1 2412 93 0 7 chr9 141827969 141828269 -443175 - AluSq SINE Alu -15 298 1 2671 133 34 14 chr9 141828274 141828711 -442733 + Tigger3b DNA MER2_type 786 1231 0 186 229 0 0 chr9 141828713 141828748 -442696 + MIR SINE MIR 203 237 -25 2161 118 16 0 chr9 141828761 141829065 -442379 - AluSp SINE Alu -4 309 1 227 225 0 0 chr9 141829151 141829191 -442253 + Tigger3b DNA MER2_type 1185 1224 -7 603 207 36 21 chr9 141829201 141829341 -442103 - L1M4 LINE L1 -1162 4984 4843 1653 118 71 0 chr9 141829341 141829595 -441849 + AluSx SINE Alu 1 272 -40 189 0 0 0 chr9 141829747 141829768 -441676 + (CAAG)n Simple_repeat Simple_repeat 4 24 0 258 81 0 0 chr9 141829781 141829818 -441626 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 1894 190 103 35 chr9 141829818 141830312 -441132 + L1MB7 LINE L1 4655 5191 -955 1916 91 45 3 chr9 141830312 141830598 -440846 + AluSx SINE Alu 1 298 -14 1894 190 103 35 chr9 141830598 141830646 -440798 + L1MB7 LINE L1 5191 5234 -912 546 184 48 131 chr9 141830644 141830850 -440594 + L1MB7 LINE L1 5959 6147 -37 * 1318 153 180 38 chr9 141830851 141831223 -440221 + Cheshire DNA MER1_type 1996 2420 0 198 281 8 109 chr9 141831398 141831526 -439918 + L2 LINE L2 2631 2745 -569 254 62 0 0 chr9 141831673 141831705 -439739 + Alu SINE Alu 1 32 -267 1503 139 114 7 chr9 141831719 141831992 -439452 + AluSx SINE Alu 1 302 -10 874 206 201 0 chr9 141832251 141832460 -438984 - Tigger3b DNA MER2_type -11 1220 970 243 329 0 0 chr9 141832455 141832531 -438913 - Tigger3b DNA MER2_type -1089 142 67 * 842 179 11 22 chr9 141832531 141832715 -438729 - AluJb SINE Alu -14 298 117 34 45 0 56 chr9 141832817 141832906 -438538 + GC_rich Low_complexity Low_complexity 1 84 0 21 71 0 0 chr9 141832933 141832975 -438469 + GC_rich Low_complexity Low_complexity 1 42 0 1322 169 101 18 chr9 141834009 141834287 -437157 - AluJb SINE Alu -11 301 1 215 328 16 0 chr9 141834347 141834408 -437036 + L2 LINE L2 3208 3269 -3 502 276 119 41 chr9 141834467 141834710 -436734 - MIR SINE MIR 0 262 1 232 138 0 8 chr9 141835009 141835227 -436217 + AluSx SINE Alu 1 302 0 302 221 79 142 chr9 141835439 141835559 -435885 - HAL1 LINE L1 0 2507 2381 1377 19 0 0 chr9 141835559 141835717 -435727 - L1PA4 LINE L1 0 6155 5998 2026 118 0 3 chr9 141835717 141836014 -435430 - AluSx SINE Alu -16 296 1 302 221 79 142 chr9 141836014 141836145 -435299 - HAL1 LINE L1 -124 2383 2271 1641 147 0 11 chr9 141836255 141836520 -434924 + AluJo SINE Alu 40 301 -11 2167 78 3 10 chr9 141836523 141836818 -434626 + AluY SINE Alu 1 293 -18 230 282 10 19 chr9 141836943 141837046 -434398 + GA-rich Low_complexity Low_complexity 5 106 0 23 0 0 0 chr9 141837291 141837314 -434130 + AT_rich Low_complexity Low_complexity 1 23 0 1786 133 0 20 chr9 141837511 141837805 -433639 - AluSx SINE Alu -24 288 1 428 164 233 9 chr9 141837807 141837923 -433521 - HAL1 LINE L1 -868 1639 1498 1377 158 76 62 chr9 141837927 141838071 -433373 - AluJb SINE Alu -6 296 155 1967 129 0 25 chr9 141838071 141838389 -433055 - AluSg SINE Alu 0 310 1 1657 123 19 58 chr9 141838391 141838701 -432743 - AluSx SINE Alu -12 300 3 1377 158 76 62 chr9 141838701 141838844 -432600 - AluJb SINE Alu -147 155 2 523 151 245 0 chr9 141838849 141838955 -432489 - FLAM_C SINE Alu -1 132 1 1960 123 3 0 chr9 141838963 141839255 -432189 - AluSq SINE Alu -10 303 11 189 0 0 0 chr9 141839448 141839469 -431975 + (TTG)n Simple_repeat Simple_repeat 1 21 0 271 105 53 0 chr9 141839472 141839510 -431934 - FLAM SINE Alu -16 117 78 1320 156 5 0 chr9 141839510 141839721 -431723 - AluSx SINE Alu -100 212 1 680 260 84 77 chr9 141839721 141839926 -431518 - HAL1 LINE L1 -1225 1282 1072 2026 85 3 41 chr9 141839926 141840250 -431194 - AluSp SINE Alu 0 313 1 680 260 84 77 chr9 141840250 141840366 -431078 - HAL1 LINE L1 -1435 1072 958 1066 113 0 12 chr9 141840471 141840631 -430813 + AluJb SINE Alu 148 305 -7 473 298 69 37 chr9 141840636 141840854 -430590 - HAL1 LINE L1 -1562 945 721 1046 145 18 0 chr9 141840867 141841033 -430411 - AluSq SINE Alu -11 302 134 2028 123 3 3 chr9 141841033 141841341 -430103 - AluSx SINE Alu -4 308 1 2141 109 0 7 chr9 141841342 141841645 -429799 - AluSx SINE Alu -8 304 4 439 113 0 0 chr9 141841645 141841707 -429737 - AluS SINE Alu -248 63 2 1946 121 0 33 chr9 141841786 141842093 -429351 - AluSx SINE Alu -15 297 1 29 78 0 0 chr9 141842477 141842541 -428903 + AT_rich Low_complexity Low_complexity 1 64 0 684 193 25 0 chr9 141842543 141842662 -428782 - FLAM_C SINE Alu -20 123 2 1202 110 0 0 chr9 141843170 141843343 -428101 - AluSq SINE Alu -7 306 134 802 184 14 27 chr9 141843443 141843590 -427854 - FRAM SINE Alu -18 158 14 1077 178 58 29 chr9 141843612 141843854 -427590 + AluJo SINE Alu 54 302 -10 1535 141 39 75 chr9 141843865 141844139 -427305 + L1M4 LINE L1 5238 5496 -678 1659 160 7 7 chr9 141844139 141844426 -427018 + AluJb SINE Alu 18 304 -8 1535 141 39 75 chr9 141844426 141844523 -426921 + L1M4 LINE L1 5496 5595 -579 375 176 29 0 chr9 141844536 141844604 -426840 - L1MD1 LINE L1 -23 6219 6150 1074 232 113 52 chr9 141844605 141845028 -426416 - MLT1C LTR MaLR -1 466 18 1940 104 0 58 chr9 141845046 141845355 -426089 - AluSg SINE Alu -19 291 1 404 315 44 67 chr9 141845507 141845805 -425639 - L2 LINE L2 -616 2698 2408 1291 176 27 30 chr9 141845887 141846149 -425295 - AluJo SINE Alu -51 261 1 324 222 120 37 chr9 141846150 141846258 -425186 - L1 LINE L1 -1818 4328 4212 489 231 46 41 chr9 141846331 141846526 -424918 + L1MC4 LINE L1 6953 7148 -894 2215 92 0 7 chr9 141846624 141846927 -424517 + AluSx SINE Alu 1 301 -11 743 274 94 24 chr9 141847285 141847625 -423819 - L2 LINE L2 -1117 2197 1834 790 261 76 16 chr9 141848184 141848262 -423182 - MER33 DNA MER1_type -2264 321 249 2037 123 0 3 chr9 141848262 141848562 -422882 + AluSx SINE Alu 1 299 -13 790 261 76 16 chr9 141848562 141848786 -422658 - MER33 DNA MER1_type -2336 249 1 203 321 37 59 chr9 141849277 141849349 -422095 - L2 LINE L2 -13 3300 3228 2054 110 0 0 chr9 141849349 141849639 -421805 + AluSx SINE Alu 1 290 -22 180 0 0 0 chr9 141849643 141849663 -421781 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 203 321 37 59 chr9 141849663 141849772 -421672 - L2 LINE L2 -88 3225 3118 950 271 155 46 chr9 141849787 141849896 -421548 + Cheshire DNA MER1_type 1 97 -2323 2261 81 0 10 chr9 141849896 141850193 -421251 + AluSg SINE Alu 1 294 -16 950 271 155 46 chr9 141850193 141850670 -420774 + Cheshire DNA MER1_type 97 651 -1769 777 235 183 9 chr9 141850671 141850874 -420570 + L1M4c LINE L1 1384 1550 -4834 2323 65 0 26 chr9 141850874 141851183 -420261 + AluY SINE Alu 1 301 -10 777 235 183 9 chr9 141851183 141851324 -420120 + L1M4c LINE L1 1550 1788 -4596 563 200 23 31 chr9 141851337 141851467 -419977 + AluJo SINE Alu 1 129 -173 1058 132 11 17 chr9 141851579 141851753 -419691 + AluJo SINE Alu 108 280 -32 534 279 61 41 chr9 141851831 141852186 -419258 + L1M4c LINE L1 1926 2295 -4089 960 194 12 6 chr9 141852186 141852356 -419088 + FAM SINE Alu 1 171 -4 534 279 61 41 chr9 141852356 141852509 -418935 + L1M4c LINE L1 2295 2444 -3940 2021 103 0 48 chr9 141852514 141852825 -418619 + AluSx SINE Alu 1 296 -16 1554 198 13 0 chr9 141854077 141854385 -417059 + AluJo SINE Alu 1 312 0 2038 113 0 0 chr9 141854419 141854710 -416734 + AluSp SINE Alu 1 291 -22 2048 228 83 7 chr9 141854936 141855635 -415809 + L1M4c LINE L1 2466 3217 -3165 1680 213 38 46 chr9 141855658 141856075 -415369 - MLT1C LTR MaLR -53 414 1 949 133 0 0 chr9 141856109 141856244 -415200 + AluSq/x SINE Alu 1 135 -178 1910 125 7 3 chr9 141856244 141856539 -414905 + AluSx SINE Alu 1 296 -16 984 292 42 11 chr9 141856539 141857015 -414429 + L1M4c LINE L1 3436 3926 -2456 834 152 7 13 chr9 141857020 141857171 -414273 + FRAM SINE Alu 13 162 -14 1963 115 4 0 chr9 141857179 141857457 -413987 + AluSq SINE Alu 1 279 -34 2316 83 0 0 chr9 141857457 141857757 -413687 + AluY SINE Alu 1 300 -11 24 0 0 0 chr9 141857772 141857796 -413648 + AT_rich Low_complexity Low_complexity 1 24 0 2286 201 83 16 chr9 141857796 141858408 -413036 + L1M4c LINE L1 3920 4572 -1810 1933 108 3 26 chr9 141858514 141858820 -412624 - AluSq SINE Alu -14 299 1 383 268 160 10 chr9 141858917 141859111 -412333 + L2 LINE L2 2640 2862 -452 1144 45 0 0 chr9 141860093 141860226 -411218 + AluSq/x SINE Alu 1 133 -180 2101 111 0 0 chr9 141860230 141860527 -410917 + AluY SINE Alu 1 297 -14 2085 125 3 0 chr9 141860532 141860837 -410607 + AluSq SINE Alu 2 307 -6 637 116 20 34 chr9 141860845 141860992 -410452 + GA-rich Low_complexity Low_complexity 2 146 0 2341 136 42 116 chr9 141861397 141861941 -409503 - L1MA3 LINE L1 -29 6276 5773 1737 143 0 0 chr9 141862018 141862291 -409153 - AluSx SINE Alu -38 274 2 1632 168 0 40 chr9 141862457 141862761 -408683 - AluJb SINE Alu -15 297 6 251 33 0 0 chr9 141862960 141862990 -408454 - L1MA3 LINE L1 -213 6092 6063 234 213 189 0 chr9 141863048 141863170 -408274 - L1P LINE L1 -758 5407 5263 225 0 0 0 chr9 141863239 141863264 -408180 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 743 192 0 0 chr9 141863264 141863384 -408060 - FLAM_A SINE Alu -12 121 2 1567 141 16 78 chr9 141863398 141863717 -407727 - AluJb SINE Alu -13 299 1 1625 156 18 14 chr9 141863901 141864184 -407260 + AluJb SINE Alu 6 289 -23 360 159 0 0 chr9 141864307 141864370 -407074 - Alu SINE Alu -1 301 239 572 295 52 36 chr9 141864370 141864790 -406654 - L1M4 LINE L1 -1462 4684 4258 291 309 111 0 chr9 141864799 141864925 -406519 - L1M4 LINE L1 -1939 4207 4068 759 150 13 20 chr9 141864949 141865102 -406342 - L1MC4 LINE L1 0 8042 7891 1892 96 41 10 chr9 141865328 141865619 -405825 - AluSx SINE Alu -12 300 1 2141 107 3 0 chr9 141865646 141865945 -405499 - AluSq SINE Alu -13 300 1 1627 184 0 10 chr9 141866050 141866344 -405100 - AluJb SINE Alu -21 291 1 1673 113 102 4 chr9 141866349 141866615 -404829 - AluSg SINE Alu -18 292 1 234 0 0 0 chr9 141866624 141866650 -404794 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1962 104 7 0 chr9 141866652 141866930 -404514 - AluSx SINE Alu -32 280 1 253 209 164 129 chr9 141867885 141867911 -403533 - L1ME LINE L1 -489 5632 5608 715 194 0 8 chr9 141867911 141868040 -403404 - FLAM_A SINE Alu -4 129 2 253 209 164 129 chr9 141868040 141868127 -403317 - L1ME LINE L1 -513 5608 5526 1799 97 123 0 chr9 141868127 141868396 -403048 - AluSx SINE Alu 0 302 1 253 209 164 129 chr9 141868396 141868506 -402938 - L1ME LINE L1 -595 5526 5400 21 36 0 0 chr9 141870729 141870757 -400687 + AT_rich Low_complexity Low_complexity 1 28 0 354 61 0 0 chr9 142071871 142071920 -199524 + (GAATG)n Satellite Satellite 2 50 0 906 138 0 0 chr9 142071932 142072106 -199338 + (GAATG)n Satellite Satellite 1 174 0 858 127 0 0 chr9 142072132 142072342 -199102 + (GAATG)n Satellite Satellite 1 210 0 870 131 0 0 chr9 142072357 142072525 -198919 + (GAATG)n Satellite Satellite 2 169 0 859 152 6 3 chr9 142072540 142072869 -198575 + (GAATG)n Satellite Satellite 1 330 0 678 110 0 0 chr9 142072884 142073049 -198395 + (GAATG)n Satellite Satellite 1 165 0 212 248 0 8 chr9 142073063 142073180 -198264 + (GAATG)n Satellite Satellite 2 117 0 198 0 0 0 chr9 142073425 142073447 -197997 + (A)n Simple_repeat Simple_repeat 1 22 0 1367 171 8 24 chr9 142073553 142073799 -197645 + AluJo SINE Alu 42 283 -29 565 256 140 18 chr9 142073824 142074261 -197183 + L1ME LINE L1 5158 5649 -521 413 94 0 0 chr9 142074900 142074953 -196491 + Alu SINE Alu 243 295 -17 1221 226 6 42 chr9 142074991 142075010 -196434 + L1 LINE L1 3437 3455 -2691 1470 181 103 3 chr9 142075010 142075292 -196152 + AluJo SINE Alu 1 310 -2 1221 226 6 42 chr9 142075292 142075608 -195836 + L1 LINE L1 3455 3760 -2386 2526 58 0 3 chr9 142075608 142075902 -195542 - AluY SINE Alu -16 295 3 2359 252 69 6 chr9 142075904 142076440 -195004 - L1M2a LINE L1 -5158 2010 1441 714 129 26 9 chr9 142076670 142076786 -194658 - THE1C LTR MaLR -257 118 1 3113 253 58 38 chr9 142076787 142077653 -193791 - L1MDa LINE L1 -5576 964 82 410 194 0 0 chr9 142077653 142077725 -193719 + Tigger7 DNA MER2_type 3 74 -265 798 151 19 2 chr9 142077732 142077948 -193496 - Tigger7 DNA MER2_type -204 346 79 529 169 0 0 chr9 142077949 142078032 -193412 + Tigger7 DNA MER2_type 2242 2324 -263 2179 104 16 23 chr9 142078041 142078350 -193094 + AluSq SINE Alu 1 307 -6 747 257 69 25 chr9 142078620 142078933 -192511 + L1 LINE L1 4057 4384 -1757 1497 238 0 0 chr9 142078933 142079235 -192209 + AluJb SINE Alu 1 302 -10 1707 187 3 3 chr9 142079256 142079555 -191889 + AluJo SINE Alu 1 299 -13 1444 240 13 40 chr9 142079557 142079969 -191475 - L1M4 LINE L1 -1293 4853 4454 2087 133 0 3 chr9 142079969 142080278 -191166 - AluY SINE Alu -3 308 1 1444 240 13 40 chr9 142080278 142080336 -191108 - L1M4 LINE L1 -1692 4454 4396 804 246 20 5 chr9 142080336 142080535 -190909 - AluJo SINE Alu -21 291 90 263 83 0 0 chr9 142080558 142080594 -190850 - MER31-int LTR ERV1 -3839 1097 1062 596 179 0 0 chr9 142080594 142080700 -190744 + MLT2B3 LTR ERVL 1 106 -448 1679 138 20 4 chr9 142081109 142081363 -190081 - AluJo SINE Alu -54 258 1 370 265 118 63 chr9 142081599 142081656 -189788 + L1M3 LINE L1 3342 3394 -2752 2625 37 3 0 chr9 142081656 142081951 -189493 - AluY SINE Alu -15 296 1 370 265 118 63 chr9 142081951 142082253 -189191 + L1M3 LINE L1 3394 3705 -2441 232 243 95 0 chr9 142082253 142082327 -189117 + L2 LINE L2 3194 3274 -39 464 263 97 52 chr9 142082585 142082874 -188570 + L1M3 LINE L1 3726 4027 -2119 639 164 30 22 chr9 142082878 142083012 -188432 + L1MB8 LINE L1 6007 6141 -37 1399 268 132 19 chr9 142083027 142083952 -187492 + L1M3 LINE L1 4006 5034 -1112 998 209 28 19 chr9 142083980 142084191 -187253 + AluJb SINE Alu 1 213 -99 344 125 0 0 chr9 142084298 142084346 -187098 + MSTA LTR MaLR 379 426 -2 8326 198 58 19 chr9 142084346 142087675 -183769 + L1MDa LINE L1 958 4433 -2107 198 91 0 0 chr9 142087675 142087708 -183736 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 8326 198 58 19 chr9 142087708 142087955 -183489 + L1MDa LINE L1 4433 4669 -1871 1359 135 67 14 chr9 142087998 142088280 -183164 + AluSx SINE Alu 1 297 -15 5840 139 65 32 chr9 142088477 142090541 -180903 + L1MA5 LINE L1 4132 6295 -5 5552 153 27 37 chr9 142090644 142091722 -179722 - MER11C LTR ERVK -4 1067 1 1121 191 55 113 chr9 142091722 142091979 -179465 + L1M3 LINE L1 5161 5431 -752 2025 133 54 0 chr9 142091979 142092273 -179171 + AluSx SINE Alu 1 310 -2 1121 191 55 113 chr9 142092273 142092300 -179144 + L1M3 LINE L1 5431 5458 -725 2013 144 3 0 chr9 142092300 142092591 -178853 + AluSx SINE Alu 1 292 -20 1121 191 55 113 chr9 142092591 142092903 -178541 + L1M3 LINE L1 5458 5774 -409 308 209 96 9 chr9 142093190 142093305 -178139 - AluSq/x SINE Alu -178 125 1 1271 236 21 82 chr9 142093823 142094360 -177084 + L1MC5 LINE L1 6740 7243 -741 2344 101 0 0 chr9 142094525 142094831 -176613 - AluSx SINE Alu -6 306 1 543 193 166 7 chr9 142094848 142094993 -176451 + MER20 DNA MER1_type 52 219 0 908 249 86 25 chr9 142094994 142095391 -176053 + L1MC5 LINE L1 7331 7751 -210 319 263 97 33 chr9 142095523 142095769 -175675 + L1MEc LINE L1 1739 1966 -4574 2539 57 0 0 chr9 142095769 142096067 -175377 + AluY SINE Alu 1 298 -13 319 263 97 33 chr9 142096067 142096095 -175349 + L1MEc LINE L1 1966 1991 -4549 422 259 101 25 chr9 142096205 142096521 -174923 + L1MEc LINE L1 3236 3575 -2965 351 62 0 0 chr9 142096716 142096764 -174680 + Alu SINE Alu 252 299 -2 5910 192 17 25 chr9 142096764 142098173 -173271 + L1M2 LINE L1 1682 3073 -3775 1110 175 0 0 chr9 142098173 142098344 -173100 + FAM SINE Alu 1 171 -4 5910 192 17 25 chr9 142098344 142098883 -172561 + L1M2 LINE L1 3073 3615 -3233 2379 109 3 0 chr9 142098898 142099209 -172235 + AluSx SINE Alu 1 312 0 2589 66 0 0 chr9 142099231 142099534 -171910 + AluSc SINE Alu 3 305 -4 3182 186 39 31 chr9 142099623 142099881 -171563 + L1M2 LINE L1 3649 3903 -2945 2278 112 0 0 chr9 142099881 142100176 -171268 + AluSx SINE Alu 1 295 -17 3182 186 39 31 chr9 142100176 142100467 -170977 + L1M2 LINE L1 3903 4208 -2640 2187 107 3 28 chr9 142100467 142100784 -170660 + AluSc SINE Alu 1 309 0 3182 186 39 31 chr9 142100784 142100975 -170469 + L1M2 LINE L1 4208 4396 -2452 268 331 35 0 chr9 142101860 142102002 -169442 - L1MC4 LINE L1 -524 7518 7372 208 315 27 9 chr9 142102009 142102120 -169324 + L2 LINE L2 2687 2799 -515 1216 165 148 8 chr9 142102554 142102797 -168647 + AluJb SINE Alu 1 277 -35 311 250 120 37 chr9 142102808 142102916 -168528 + LTR35 LTR ERV1 453 569 -49 424 182 26 0 chr9 142102938 142103015 -168429 + LTR35 LTR ERV1 540 618 0 21 0 0 0 chr9 142103061 142103082 -168362 + AT_rich Low_complexity Low_complexity 1 21 0 1425 67 0 0 chr9 142103183 142103361 -168083 - L1PA3 LINE L1 0 6155 5978 1960 133 9 19 chr9 142103469 142103784 -167660 + AluSx SINE Alu 1 312 0 2069 143 0 10 chr9 142103942 142104256 -167188 + AluSx SINE Alu 1 311 -1 2003 86 50 7 chr9 142104264 142104544 -166900 + AluSq SINE Alu 1 292 -21 1622 160 64 11 chr9 142104558 142104839 -166605 + AluJb SINE Alu 1 296 -16 1978 142 3 37 chr9 142104859 142105183 -166261 + AluSq SINE Alu 1 313 0 2132 108 3 14 chr9 142105189 142105486 -165958 + AluSx SINE Alu 1 294 -18 1981 144 3 7 chr9 142105488 142105794 -165650 + AluSg1 SINE Alu 1 305 -4 420 139 0 13 chr9 142106111 142106190 -165254 - AluJ/FRAM SINE Alu -3 309 232 2326 78 3 10 chr9 142106266 142106573 -164871 + AluSp SINE Alu 1 305 -8 2282 81 0 7 chr9 142107325 142107622 -163822 + AluSc SINE Alu 15 309 0 185 105 105 0 chr9 142107633 142107690 -163754 + GA-rich Low_complexity Low_complexity 3 65 0 610 218 18 0 chr9 142107707 142107817 -163627 + FLAM_C SINE Alu 2 113 -30 427 41 0 0 chr9 142107831 142107909 -163535 - AluSp/q SINE Alu 0 311 234 396 291 0 0 chr9 142107911 142108052 -163392 + T-rich Low_complexity Low_complexity 1 141 0 657 253 0 0 chr9 142108064 142108242 -163202 + T-rich Low_complexity Low_complexity 1 178 0 186 224 26 13 chr9 142108273 142108349 -163095 + CT-rich Low_complexity Low_complexity 2 78 0 3798 222 48 54 chr9 142108495 142109801 -161643 + L1PA7 LINE L1 561 1825 -4626 10254 122 58 16 chr9 142109803 142111867 -159577 + L1PA7 LINE L1 4099 6216 -253 2230 131 0 3 chr9 142111867 142112181 -159263 + AluSp SINE Alu 1 313 0 10254 122 58 16 chr9 142112181 142112441 -159003 + L1PA7 LINE L1 6216 6464 -5 3053 238 58 43 chr9 142113736 142114990 -156454 + L1 LINE L1 2889 4161 -1985 * 9194 26 4 1 chr9 142114980 142116057 -155387 + L1P LINE L1 3606 4685 -1461 1053 104 0 0 chr9 142118212 142118516 -152928 + (TG)n Simple_repeat Simple_repeat 1 304 0 618 159 44 9 chr9 142120328 142120441 -151003 - MLT1C LTR MaLR 0 467 351 460 272 63 42 chr9 142120443 142120768 -150676 - LTR35 LTR ERV1 -2 677 350 317 248 80 35 chr9 142120895 142121008 -150436 - LTR35 LTR ERV1 -500 118 1 283 242 110 11 chr9 142121008 142121093 -150351 - MLT1C LTR MaLR -134 371 278 2015 141 3 0 chr9 142121105 142121396 -150048 - AluSx SINE Alu -18 294 3 1649 244 75 27 chr9 142121400 142122217 -149227 - L1M4 LINE L1 -774 5372 4326 1273 229 23 20 chr9 142122217 142122340 -149104 + AluJb SINE Alu 1 122 -190 192 48 71 0 chr9 142122340 142122382 -149062 + A-rich Low_complexity Low_complexity 2 46 0 1273 229 23 20 chr9 142122382 142122560 -148884 + AluJb SINE Alu 122 303 -9 1649 244 75 27 chr9 142122560 142122584 -148860 - L1M4 LINE L1 -1820 4326 4305 1705 191 0 13 chr9 142122590 142122905 -148539 - AluSx SINE Alu -1 311 1 440 150 6 42 chr9 142123173 142123340 -148104 + (TTAGGG)n Simple_repeat Simple_repeat 2 162 0 628 160 11 17 chr9 142123466 142123641 -147803 + (TTAGGG)n Simple_repeat Simple_repeat 1 174 0 2426 147 23 0 chr9 142123641 142124425 -147019 + L1MB3 LINE L1 1591 2444 -5121 * 8375 17 0 0 chr9 142124405 142126274 -145170 + L1HS LINE L1 4287 6155 0 3250 226 83 19 chr9 142126278 142128187 -143257 + L1MB3 LINE L1 5570 7601 -1 548 281 42 47 chr9 142128191 142128445 -142999 - L1M LINE L1 -797 5349 5128 678 217 31 0 chr9 142128458 142128619 -142825 + L1MB4 LINE L1 6013 6178 -2 255 371 118 12 chr9 142130183 142130353 -141091 - MIR SINE MIR -24 238 51 192 232 71 0 chr9 142132596 142132652 -138792 - MIR SINE MIR -60 148 89 375 234 87 57 chr9 142132915 142133107 -138337 - MER20 DNA MER1_type -3 216 5 574 258 45 0 chr9 142134104 142134282 -137162 + MER5A DNA MER1_type 1 186 -3 2396 77 0 10 chr9 142135774 142136086 -135358 - AluY SINE Alu -2 309 1 5301 139 35 3 chr9 142136095 142137133 -134311 - L1MA4A LINE L1 -3 6300 5222 235 287 22 52 chr9 142137199 142137278 -134166 - L1MC/D LINE L1 -1883 5925 5850 1753 164 3 13 chr9 142137278 142137583 -133861 - AluJb SINE Alu -10 302 1 235 287 22 52 chr9 142137583 142137639 -133805 - L1MC/D LINE L1 -1958 5850 5794 273 339 31 8 chr9 142137787 142137914 -133530 - L1MC/D LINE L1 -595 5571 5442 974 128 0 0 chr9 142137926 142138059 -133385 + FLAM_C SINE Alu 1 133 0 323 315 66 37 chr9 142138154 142138393 -133051 - L1MC/D LINE L1 -849 5297 5054 585 181 0 2 chr9 142138408 142138552 -132892 + AluJo SINE Alu 1 177 -135 1089 226 12 22 chr9 142139495 142140567 -130877 - TAR1 Satellite telomeric -1351 1060 1 374 225 18 63 chr9 142140661 142140772 -130672 - MIR SINE MIR -85 123 18 2023 128 27 54 chr9 142140931 142141339 -130105 - TAR1 Satellite telomeric -1711 400 4 1003 165 96 120 chr9 142141193 142141600 -129844 - LTR60 LTR ERV1 -39 547 151 * 236 182 36 18 chr9 142141644 142141699 -129745 + (CCCTAA)n Simple_repeat Simple_repeat 2 57 0 2193 89 0 0 chr9 142141798 142142079 -129365 + AluSq SINE Alu 1 281 -32 293 0 27 0 chr9 142142083 142142120 -129324 + (CAA)n Simple_repeat Simple_repeat 2 39 0 319 303 53 30 chr9 142142431 142142563 -128881 + L1MCa LINE L1 1925 2059 -4367 314 23 0 23 chr9 142143230 142143274 -128170 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 370 10 30 chr9 142149210 142149310 -122134 + MIR SINE MIR 128 225 -37 352 259 0 25 chr9 142151492 142151573 -119871 + MIR3 SINE MIR 82 160 -48 271 299 63 58 chr9 142151577 142151751 -119693 + MER117 DNA MER1_type 5 179 -18 242 222 0 0 chr9 142154954 142155008 -116436 - L2 LINE L2 -558 2756 2703 2348 251 95 15 chr9 142155021 142155911 -115533 - L1ME1 LINE L1 -5 6161 5344 1731 176 3 40 chr9 142155911 142156235 -115209 - AluJo SINE Alu 0 312 1 2348 251 95 15 chr9 142156235 142156262 -115182 - L1ME1 LINE L1 -822 5344 5321 2008 119 7 0 chr9 142156262 142156540 -114904 + AluSx SINE Alu 5 284 -28 254 28 0 28 chr9 142156540 142156576 -114868 + (TA)n Simple_repeat Simple_repeat 2 36 0 2348 251 95 15 chr9 142156576 142156607 -114837 - L1ME1 LINE L1 -844 5322 5132 1716 137 61 4 chr9 142156607 142156885 -114559 - AluSx SINE Alu -18 294 1 324 214 11 0 chr9 142156886 142156975 -114469 - L1ME1 LINE L1 -1094 5052 4963 478 259 70 80 chr9 142156977 142157263 -114181 + MLT1B LTR MaLR 1 283 -107 1088 145 91 0 chr9 142157374 142157560 -113884 - AluSx SINE Alu -109 203 1 517 270 107 30 chr9 142157571 142157804 -113640 - L2 LINE L2 -609 2705 2455 1086 174 21 0 chr9 142157805 142157995 -113449 + AluJb SINE Alu 86 279 -33 441 0 0 0 chr9 142157995 142158044 -113400 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 318 356 181 19 chr9 142158047 142158484 -112960 - L2 LINE L2 -1096 2218 1661 2086 93 24 10 chr9 142158484 142158774 -112670 - AluSc SINE Alu -14 295 2 318 356 181 19 chr9 142158774 142158920 -112524 - L2 LINE L2 -1653 1661 1540 350 291 40 26 chr9 142159129 142159280 -112164 + MIR SINE MIR 21 173 -89 204 218 0 18 chr9 142162597 142162652 -108792 + G-rich Low_complexity Low_complexity 1 54 0 219 348 238 4 chr9 142165197 142165441 -106003 + L2 LINE L2 2972 3272 0 219 240 28 22 chr9 142165645 142165824 -105620 + (CA)n Simple_repeat Simple_repeat 1 180 0 502 337 11 24 chr9 142165837 142166210 -105234 + (CA)n Simple_repeat Simple_repeat 1 368 0 203 184 26 0 chr9 142167853 142167891 -103553 + (TGAG)n Simple_repeat Simple_repeat 1 39 0 4078 198 24 26 chr9 142169130 142170592 -100852 - L1MB5 LINE L1 -1 6173 4719 703 220 21 5 chr9 142170586 142170772 -100672 - L1MB5 LINE L1 -2372 3774 3586 * 2303 131 27 3 chr9 142170804 142171178 -100266 - L1MB3 LINE L1 0 6183 5801 252 259 0 0 chr9 142171794 142171902 -99542 + (CA)n Simple_repeat Simple_repeat 1 108 0 367 330 17 6 chr9 142172848 142173024 -98420 + (CA)n Simple_repeat Simple_repeat 2 179 0 485 308 6 16 chr9 142173071 142173253 -98191 + (CA)n Simple_repeat Simple_repeat 1 180 0 300 262 49 66 chr9 142175300 142175422 -96022 - MIR SINE MIR -62 200 81 2199 95 7 7 chr9 142175435 142175751 -95693 - AluSx SINE Alu 0 316 1 239 180 60 0 chr9 142176888 142176948 -94496 - MIR SINE MIR -70 138 87 1047 157 13 0 chr9 142177592 142177751 -93693 + AluJb SINE Alu 133 293 -19 1075 177 38 101 chr9 142177754 142177944 -93500 + Cheshire DNA MER1_type 1065 1229 -1191 2106 137 0 23 chr9 142177944 142178071 -93373 - AluSx SINE Alu -16 296 168 4651 175 31 40 chr9 142178071 142179049 -92395 - LTR5 LTR ERVK 0 969 1 2106 137 0 23 chr9 142179049 142179221 -92223 - AluSx SINE Alu -144 168 4 1075 177 38 101 chr9 142179221 142179346 -92098 + Cheshire DNA MER1_type 1229 1360 -1060 781 140 129 22 chr9 142179342 142179520 -91924 + Cheshire DNA MER1_type 2108 2304 -116 * 23 54 0 0 chr9 142179521 142179558 -91886 + AT_rich Low_complexity Low_complexity 1 37 0 1303 154 14 19 chr9 142179583 142179797 -91647 + AluJb SINE Alu 85 297 -15 378 218 202 0 chr9 142179846 142179970 -91474 - MIR SINE MIR -89 173 25 2264 123 3 0 chr9 142180209 142180517 -90927 + AluSp SINE Alu 1 309 -4 2293 108 0 0 chr9 142180639 142180934 -90510 + AluSx SINE Alu 3 297 -15 481 151 12 12 chr9 142180956 142181042 -90402 + FLAM_A SINE Alu 31 116 -26 2330 103 0 7 chr9 142181201 142181503 -89941 + AluSx SINE Alu 2 301 -11 2295 88 10 7 chr9 142181860 142182154 -89290 + AluY SINE Alu 1 295 -16 687 140 0 0 chr9 142182680 142182787 -88657 - AluSg/x SINE Alu -17 293 187 686 107 7 20 chr9 142182787 142182936 -88508 + (CCCTAA)n Simple_repeat Simple_repeat 5 151 0 2200 114 10 0 chr9 142182977 142183285 -88159 + AluSx SINE Alu 1 311 -1 201 154 0 0 chr9 142185272 142185311 -86133 + CT-rich Low_complexity Low_complexity 3 41 0 180 77 0 0 chr9 142187231 142187257 -84187 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 6099 293 36 11 chr9 142187620 142189211 -82233 - PRIMA41-int LTR ERV1 -1593 6163 4516 2427 113 5 27 chr9 142189211 142189374 -82070 + THE1B LTR MaLR 1 166 -198 1959 129 4 0 chr9 142189374 142189654 -81790 - AluSx SINE Alu -9 303 23 2427 113 5 27 chr9 142189654 142189862 -81582 + THE1B LTR MaLR 166 364 0 6099 293 36 11 chr9 142189862 142190145 -81299 - PRIMA41-int LTR ERV1 -3240 4516 4242 731 299 0 0 chr9 142190592 142190766 -80678 - MER41D LTR ERV1 0 557 384 1988 159 7 0 chr9 142191365 142191674 -79770 - AluSx SINE Alu -1 311 1 632 177 108 0 chr9 142191997 142192127 -79317 + MER4B LTR ERV1 1 144 -466 3344 119 22 3 chr9 142192151 142192732 -78712 - L1MA2 LINE L1 -2 7721 7130 6795 255 64 15 chr9 142192732 142192956 -78488 - L1MA2 LINE L1 -743 6822 6610 1818 160 37 35 chr9 142192956 142193001 -78443 - THE1C LTR MaLR 0 375 332 2117 145 0 0 chr9 142193001 142193304 -78140 - AluSg1 SINE Alu -5 304 2 1818 160 37 35 chr9 142193304 142193632 -77812 - THE1C LTR MaLR -43 332 1 6795 255 64 15 chr9 142193632 142194623 -76821 - L1MA2 LINE L1 -955 6610 5669 1720 214 62 7 chr9 142194623 142195029 -76415 - MSTA LTR MaLR 0 428 1 7216 211 30 18 chr9 142195029 142196661 -74783 - MSTA-int LTR MaLR 0 1651 1 1851 201 46 12 chr9 142196661 142197075 -74369 - MSTA LTR MaLR 0 428 1 6795 255 64 15 chr9 142197075 142197435 -74009 - L1MA2 LINE L1 -1896 5669 5328 2254 126 0 0 chr9 142197435 142197736 -73708 - AluSx SINE Alu -11 301 1 6795 255 64 15 chr9 142197736 142198495 -72949 - L1MA2 LINE L1 -2237 5328 4608 7517 18 1 0 chr9 142198495 142199486 -71958 + L1PA3 LINE L1 5164 6155 0 6795 255 64 15 chr9 142199486 142201311 -70133 - L1MA2 LINE L1 -2957 4608 2560 1887 60 17 13 chr9 142201314 142201547 -69897 - AluY SINE Alu -15 296 63 7843 158 39 18 chr9 142201647 142203073 -68371 - L1MA2 LINE L1 -5712 1854 399 1411 221 62 14 chr9 142203070 142203132 -68312 - L1M4 LINE L1 -820 5326 5268 * 2359 148 18 5 chr9 142203132 142203530 -67914 + MER57A LTR ERV1 1 403 0 1411 221 62 14 chr9 142203530 142203902 -67542 - L1M4 LINE L1 -878 5268 4871 426 248 21 28 chr9 142203884 142204029 -67415 - L1M4 LINE L1 -2612 3534 3391 * 301 281 96 22 chr9 142204043 142204178 -67266 + MIR SINE MIR 86 230 -32 291 298 57 16 chr9 142204921 142205045 -66399 + L2 LINE L2 233 361 -2953 767 276 117 79 chr9 142205121 142205752 -65692 + L2 LINE L2 606 1260 -2054 231 408 0 8 chr9 142205783 142205903 -65541 + L2 LINE L2 1813 1931 -1383 904 128 0 0 chr9 142205905 142206030 -65414 - AluSg/x SINE Alu -12 298 174 2380 108 0 0 chr9 142206032 142206337 -65107 - AluSx SINE Alu -7 305 1 517 276 35 0 chr9 142206546 142206691 -64753 - MER5A DNA MER1_type 0 189 40 814 301 175 0 chr9 142207961 142208453 -62991 + L2 LINE L2 2351 2928 -386 244 364 93 6 chr9 142211176 142211259 -60185 + MIR SINE MIR 86 160 -102 2418 108 0 0 chr9 142211259 142211566 -59878 + AluSx SINE Alu 1 307 -5 244 364 93 6 chr9 142211566 142211644 -59800 + MIR SINE MIR 160 261 -1 210 238 95 0 chr9 142211946 142212009 -59435 + MIR SINE MIR 116 184 -78 217 119 24 0 chr9 142215040 142215082 -56362 - L2 LINE L2 -262 3051 3009 332 321 89 25 chr9 142217856 142218093 -53351 - L1ME LINE L1 -405 5765 5514 1972 145 14 0 chr9 142218099 142218381 -53063 - AluSx SINE Alu -26 286 1 1350 280 58 28 chr9 142218400 142219175 -52269 - L1ME LINE L1 -2480 3666 2869 219 260 0 0 chr9 142219288 142219338 -52106 + CT-rich Low_complexity Low_complexity 1 50 0 847 186 31 0 chr9 142219338 142219499 -51945 - FRAM SINE Alu 0 166 1 237 245 212 20 chr9 142219572 142219723 -51721 + LTR16C LTR ERVL 237 416 -75 2045 307 116 71 chr9 142220191 142222285 -49159 + HERV16 LTR ERVL 501 2499 -3121 1762 169 3 3 chr9 142222285 142222586 -48858 - AluJo SINE Alu -11 301 1 283 192 19 0 chr9 142222595 142222647 -48797 - Alu SINE Alu -247 56 4 2045 307 116 71 chr9 142222647 142223153 -48291 + HERV16 LTR ERVL 2506 3269 -2351 307 320 120 15 chr9 142223299 142223499 -47945 + HERV16 LTR ERVL 3493 3713 -2051 651 287 43 22 chr9 142223888 142224118 -47326 + HERV16 LTR ERVL 4190 4424 -1230 345 327 66 14 chr9 142224318 142224529 -46915 + HERV16 LTR ERVL 4690 4911 -743 592 284 78 30 chr9 142225148 142225482 -45962 + LTR16C LTR ERVL 141 490 -1 328 302 40 13 chr9 142225497 142225646 -45798 - L1ME LINE L1 -3316 2830 2678 1949 191 65 30 chr9 142228126 142228559 -42885 + L1M4 LINE L1 4863 5320 -858 2598 25 0 16 chr9 142228559 142228875 -42569 + AluY SINE Alu 1 311 0 1949 191 65 30 chr9 142228875 142229236 -42208 + L1M4 LINE L1 5320 5667 -511 266 299 24 55 chr9 142232552 142232679 -38765 + MIR SINE MIR 108 230 -32 380 129 0 14 chr9 142233007 142233077 -38367 + (CA)n Simple_repeat Simple_repeat 2 70 0 276 100 0 0 chr9 142233805 142233845 -37599 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 786 196 0 0 chr9 142236269 142236402 -35042 + FLAM_C SINE Alu 1 133 0 1891 158 0 3 chr9 142236406 142236710 -34734 + AluSx SINE Alu 1 303 -9 483 255 34 19 chr9 142237109 142237279 -34165 + MIR SINE MIR 16 189 -62 366 295 48 0 chr9 142238764 142238869 -32575 + MER58A DNA MER1_type 1 110 0 310 217 96 12 chr9 142239161 142239244 -32200 - L2 LINE L2 0 3272 3183 339 218 74 95 chr9 142239846 142240089 -31355 + L2 LINE L2 2404 2641 -673 440 338 140 16 chr9 142240268 142240582 -30862 + L2 LINE L2 2920 3272 0 575 306 59 30 chr9 142240793 142241064 -30380 + L2 LINE L2 2997 3275 -38 188 286 50 42 chr9 142241333 142241452 -29992 + MIR SINE MIR 108 227 -35 1881 107 28 24 chr9 142242949 142243239 -28205 - AluSq SINE Alu -5 308 18 1453 154 19 64 chr9 142243353 142243665 -27779 + AluJo SINE Alu 1 298 -14 278 346 48 0 chr9 142244242 142244346 -27098 + L1MEd LINE L1 561 669 -5450 314 286 51 51 chr9 142244359 142244534 -26910 + MER105 DNA DNA 26 200 -4 2925 60 29 106 chr9 142244539 142245020 -26424 + MLT2A1 LTR ERVL 1 444 0 290 242 57 32 chr9 142245023 142245180 -26264 + L1MEd LINE L1 667 827 -5292 1242 142 10 5 chr9 142245186 142245391 -26053 + AluJb SINE Alu 1 206 -106 591 148 0 10 chr9 142245391 142245492 -25952 + L1PB4 LINE L1 6057 6156 0 727 282 37 123 chr9 142245492 142246145 -25299 + L1MEd LINE L1 2545 3141 -2988 1434 104 4 43 chr9 142246199 142246429 -25015 - AluSg/x SINE Alu -1 311 91 980 126 6 66 chr9 142246630 142246812 -24632 - AluSq SINE Alu -142 171 1 508 302 81 34 chr9 142246821 142247230 -24214 - L1M4 LINE L1 -3383 2763 2328 1871 90 108 4 chr9 142247230 142247508 -23936 - AluSx SINE Alu -5 307 1 508 302 81 34 chr9 142247508 142247568 -23876 - L1M4 LINE L1 -3818 2328 2272 639 313 122 24 chr9 142247879 142248336 -23108 - L1M2 LINE L1 -371 5793 5293 271 253 24 12 chr9 142248320 142248403 -23041 - L1M2 LINE L1 -1132 5014 4931 * 254 281 79 9 chr9 142248423 142248537 -22907 - L1M4 LINE L1 -1905 4241 4120 184 267 9 105 chr9 142248625 142248730 -22714 + L2 LINE L2 2789 2883 -431 356 294 68 66 chr9 142248746 142249171 -22273 - L1M4 LINE L1 -2248 3898 3473 12955 172 31 64 chr9 142249177 142250589 -20855 - L1PB1 LINE L1 -1 6866 5408 1992 127 0 40 chr9 142250589 142250913 -20531 - AluSx SINE Alu -1 311 1 12955 172 31 64 chr9 142250913 142253021 -18423 - L1PB1 LINE L1 -1459 5408 3459 744 12 0 0 chr9 142253021 142253107 -18337 - AluYa5/8 SINE Alu -12 299 214 12955 172 31 64 chr9 142253107 142254718 -16726 - L1PB1 LINE L1 -3408 3459 1796 959 110 18 31 chr9 142254819 142254982 -16462 + AluSg/x SINE Alu 152 312 0 545 353 70 17 chr9 142254985 142255342 -16102 + L1 LINE L1 3274 3649 -2497 2613 117 82 2 chr9 142255584 142256010 -15434 + MER101 LTR ERV1 15 474 0 2126 104 37 0 chr9 142256258 142256557 -14887 + AluSx SINE Alu 1 310 -2 288 296 171 26 chr9 142256683 142256979 -14465 + L1 LINE L1 3687 3939 -2207 195 69 0 0 chr9 142256979 142257008 -14436 + (CA)n Simple_repeat Simple_repeat 2 30 0 288 296 171 26 chr9 142257008 142257279 -14165 + L1 LINE L1 3939 4336 -1810 4190 138 18 13 chr9 142257331 142258157 -13287 + L1MC2 LINE L1 5177 6003 -341 244 326 12 12 chr9 142259109 142259195 -12249 + L2 LINE L2 3185 3270 -2 1787 125 17 20 chr9 142259654 142259950 -11494 + AluJb SINE Alu 6 300 -12 21 0 0 0 chr9 142260709 142260730 -10714 + GC_rich Low_complexity Low_complexity 1 21 0 30 93 0 0 chr9 142260890 142260976 -10468 + GC_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 142261741 142261762 -9682 + GC_rich Low_complexity Low_complexity 1 21 0 517 306 38 0 chr9 142262741 142262898 -8546 - MIR SINE MIR -34 228 66 2205 86 7 0 chr9 142264446 142264749 -6695 - AluSx SINE Alu -7 305 1 285 231 0 0 chr9 142267573 142267651 -3793 + (TG)n Simple_repeat Simple_repeat 1 78 0 444 220 0 0 chr9 142267713 142267872 -3572 + (TG)n Simple_repeat Simple_repeat 2 160 0 267 295 6 38 chr9 142269499 142269682 -1762 + (CA)n Simple_repeat Simple_repeat 1 177 0 1109 140 12 5 chr9 142271042 142271305 -139 - AluJb SINE Alu -1 311 16